BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate
reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
         (954 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 2001 bits (5185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 954/954 (100%), Positives = 954/954 (100%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK
Sbjct: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL
Sbjct: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI
Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP
Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI
Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN
Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK
Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN
Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI
Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC
Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL
Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV
Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ
Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD
Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT
Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ
Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954


>gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 934

 Score = 1511 bits (3912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/937 (75%), Positives = 812/937 (86%), Gaps = 3/937 (0%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
           + YPFPEK+KG++VI+RNG  T FDPSKIS AIMKAF+AVEGK AS S RV++I+  LTE
Sbjct: 1   MTYPFPEKVKGIKVIRRNGKTTPFDPSKISWAIMKAFIAVEGKSASSSSRVRNIVNVLTE 60

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +TV +LL    S LI+HIE IQDQVE SLM++ HHK+ REYVLYREERS +R A++HSKS
Sbjct: 61  ETVLKLLHEYSSNLIIHIEAIQDQVEASLMRNDHHKVAREYVLYREERSGIRTAKAHSKS 120

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           D P    LKI MDD T +  +SKRL+MI+EE+C+GLQDVS +++LSET KNMYDG+SE +
Sbjct: 121 DTP---HLKIRMDDDTFVPLDSKRLKMIIEESCAGLQDVSLELILSETIKNMYDGMSEVE 177

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE AL+F+SR LIE+EPNYAKVT R LL+KLRREVLT +YK P+KATH EM  LY  YF 
Sbjct: 178 LELALVFASRALIEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFL 237

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +YIEEG+KA LL ESM +FDL YLAN LK +RD  FEYLGLQ LYDRYFLH++GSR EMP
Sbjct: 238 QYIEEGIKAHLLAESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMP 297

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMG+ALKE EKEKRAVEFYNL+SSFHFMCSTPTLFN+GTRHPQLSSCFLTTVP
Sbjct: 298 QAFFMRVAMGIALKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVP 357

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL  IF A+++NA+LAKYSGGLGNDWT VRGLG+HI GTNGKSQGVIPFLKVANDTAVA
Sbjct: 358 DDLGDIFEAIKDNALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVA 417

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +N 
Sbjct: 418 VNQGGKRKGAVCAYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNE 477

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSPDEV DLH LYG +FE AY NYE++A+RGEIK+FRKI+AV+LWRKMLTM+FETG
Sbjct: 478 QWTLFSPDEVGDLHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETG 537

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           HPWITFKDPCNIRSPQQHVG V  SNLCTEITLN S +E AVCNLGSINL AH   N  D
Sbjct: 538 HPWITFKDPCNIRSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLD 597

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           YDKLA+TI TAVR+LDNVID+N + I+KA+ SN  HR IGLGLMGFQSALH L IPY S 
Sbjct: 598 YDKLANTIHTAVRMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESV 657

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EAV+ AD+SMEFISFHAISAS  LA+ERG YS+FKGSLW +G+ PIDS+ LL EVRD+  
Sbjct: 658 EAVDFADQSMEFISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDKCE 717

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++++SRL WD L++RVK++GMRNSNCMAIAPTATI+NICGVSQSI+PSYQNL+VKSNMSG
Sbjct: 718 IDKSSRLGWDVLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSG 777

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DFT+VNS LVN+LK R LWDE MISDLK++DGSIGNIERIP+DLKK+HATAFEIDP+WLI
Sbjct: 778 DFTIVNSCLVNDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLI 837

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           ++ASRRQKWIDQAQSLNLYL +PSGKKLDFIYRQ+WLMGLKTTYYLRSRSAT VEKSTLK
Sbjct: 838 KAASRRQKWIDQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLK 897

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            VDGKLN+VP+ D NSS       SSC S  ECEVCQ
Sbjct: 898 EVDGKLNSVPIMDHNSSELLSTPQSSCDSGVECEVCQ 934


>gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans
           sp. BNC1]
          Length = 954

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/925 (65%), Positives = 737/925 (79%), Gaps = 2/925 (0%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG VT FDPSKI+ A+ KAF+AVEG  A+ S RV +++++LTEQ V  L + N++
Sbjct: 32  RVIRRNGSVTPFDPSKIAIALTKAFLAVEGSVAAGSRRVHEVVEDLTEQVVGALTRRNEA 91

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIE+IQDQVE +LM+ GHHK+ R YVLYREER+  RAA   +++ A   P L++M+
Sbjct: 92  GRTFHIEEIQDQVELALMRDGHHKVARAYVLYREERARERAATKTAENAA--QPILQVML 149

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           +DG+    +  RL  +VEEAC GL+ VS++ +LSE  +N+YDG++  +L  A I ++RTL
Sbjct: 150 EDGSKTPLDIARLTAVVEEACQGLEAVSAEAILSEAQRNLYDGITLDELSLAPILAARTL 209

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +E EPNY++V+AR LL+KLRRE LT V  +P +AT  EM   YP YF  +I  G++A ++
Sbjct: 210 VETEPNYSQVSARLLLDKLRREALTFVEGRPTQATQAEMVERYPAYFEGFIAAGIQAEMI 269

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  FDL  L   LK ERD  F+YLG Q LYDRYFLH +G R E+PQAFFMRVAMGLA
Sbjct: 270 DPELGRFDLKRLGAALKPERDLRFQYLGFQTLYDRYFLHEDGVRYELPQAFFMRVAMGLA 329

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E ++E RA+EFY+L+S+F FMCSTPTLFN+GT  PQLSSCFLTTV DDL GIF A+++
Sbjct: 330 LREIDREARAIEFYDLISTFDFMCSTPTLFNAGTLRPQLSSCFLTTVSDDLDGIFKAVKD 389

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+LAKYSGGLGNDWTPVRGLGA I GTNGKSQG++PFLKVANDTA+AVNQGGKRKGAVC
Sbjct: 390 NALLAKYSGGLGNDWTPVRGLGARIKGTNGKSQGIVPFLKVANDTAIAVNQGGKRKGAVC 449

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV  +  WTLFSPDE  D
Sbjct: 450 AYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMERVEADGEWTLFSPDETPD 509

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDLYG  F+ AYE YE +A RGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+
Sbjct: 510 LHDLYGPAFKAAYEEYEARAARGEIRVFRQVRAVDLWRRMLTMLFETGHPWITFKDPCNL 569

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQ+H GVVHSSNLCTEITLN+S +E AVCNLGSINL AH +    D +KLA T+ TA+
Sbjct: 570 RSPQRHAGVVHSSNLCTEITLNTSKDEVAVCNLGSINLAAHVSEKGLDMEKLARTVATAM 629

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ AL  L +PYAS  AVE AD SME 
Sbjct: 630 RMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFQDALQTLRLPYASEGAVEFADRSMEA 689

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++HAISASVELA+ERGAY+SF+GSLW +GV PIDS+  +AE R    M+R + L W+ L
Sbjct: 690 IAYHAISASVELAKERGAYASFEGSLWSKGVLPIDSLSFVAESRGVDGMDRGTTLDWESL 749

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + RV   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSGDFTVVN+ LV++
Sbjct: 750 RARVVEHGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLFVKSNMSGDFTVVNAALVHD 809

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK R LWDE M+SDLKY+DG +G I+R+PDDLK ++ATAFEIDP WLIE+ASRRQKWIDQ
Sbjct: 810 LKARGLWDEVMVSDLKYYDGLLGQIDRVPDDLKALYATAFEIDPAWLIEAASRRQKWIDQ 869

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           AQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSAT VEKSTLK  DGKLNAV V 
Sbjct: 870 AQSLNLYIANPSGKKLDELYRLAWRKGLKTTYYLRSRSATHVEKSTLKRADGKLNAVAVM 929

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
              ++    G+ +    D +CE CQ
Sbjct: 930 PQPAAFELEGVKACAIDDPDCEACQ 954


>gi|209885873|ref|YP_002289729.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
          Length = 969

 Score = 1269 bits (3283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/951 (64%), Positives = 738/951 (77%), Gaps = 13/951 (1%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P    P P +   +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV +I++ L
Sbjct: 20  PESLAPSPRE-PAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEIVEGL 78

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           T++ VT L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA   +
Sbjct: 79  TQEVVTNLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAAGKSA 138

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           ++     P L++ + +GT    + KRLE+I+ EA  GL  V    VL+E  +N+YDG+S+
Sbjct: 139 EAAVSNEPALQMTLANGTRAPLDIKRLELIIREAGEGLDGVDPAPVLAEARRNLYDGISQ 198

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +L  A I ++RTL+E EPNYA V+AR LL+KLR EVLT +YK P  A+  +M   Y EY
Sbjct: 199 DELALAPIMAARTLVEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYAEY 258

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  Y++ G++A LL   +  FDL  LA+ LK ERD  F++LGLQ LYDRYFLH+ GSR+E
Sbjct: 259 FPVYVKAGIEAELLDPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSRLE 318

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSCFLTT
Sbjct: 319 LPQAFFMRVAMGLAVREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTT 378

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL GIF A+++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA
Sbjct: 379 VADDLDGIFKAVKDNALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVANDTA 438

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV +
Sbjct: 439 IAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEE 498

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSPDE  DLHDLYG  F+ AYE YE +A RGEI VF+++ A  LWR+MLTMLFE
Sbjct: 499 DGTWTLFSPDETPDLHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTMLFE 558

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINLL H     
Sbjct: 559 TGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREG 618

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            ++DKL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  IP  
Sbjct: 619 LNHDKLKRTIATAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIPIT 678

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  AV  ADESME IS+HAISASV+LA ERG Y SF+GSLW QG+ PIDS+ +LA+ R+ 
Sbjct: 679 SDAAVAFADESMEIISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKARNG 738

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++ ++ L W  L++RVKT GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSNM
Sbjct: 739 APLDTSATLDWSGLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKSNM 798

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDFTVVN FLV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++AT FEID  W
Sbjct: 799 SGDFTVVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDTSW 858

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKST
Sbjct: 859 LIQAAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKST 918

Query: 916 LKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           LKG DGKLNAV           P+  PN +   L    +C+ D  +CE CQ
Sbjct: 919 LKGTDGKLNAVSASIPSAQQHAPIVVPNDTAPDLTGVKACSIDNPDCEACQ 969


>gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 960

 Score = 1260 bits (3260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/956 (62%), Positives = 736/956 (76%), Gaps = 21/956 (2%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D  PS+         G ++I+RNG VT FDP+KI+ A+ KAF+AVEG  A+ S R+ D++
Sbjct: 12  DRPPSVVEHVTAANPGYRLIRRNGTVTRFDPTKITLALTKAFLAVEGSSAASSRRIHDVV 71

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LT+Q V+ L +         IED+QDQVE +LM+  +HK+ R YVLYRE+R+  R   
Sbjct: 72  GGLTQQIVSSLTRRADLGHTFLIEDVQDQVELALMRGEYHKVARAYVLYREDRAKQRIES 131

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           + +    P +P L++   DG ++  ++ RL  +VEEAC+GL DV +  VLSET +N+YDG
Sbjct: 132 AQNAQLEPASP-LRVTATDGIVVPLDAVRLAAVVEEACAGLDDVRASQVLSETRRNLYDG 190

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++RTLIE EPNYAKV+AR LL+KLRRE L+ V  +P++ATH EM   Y
Sbjct: 191 ISLDELALAPILAARTLIETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRY 250

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  YI  G+ + LL   +  FDLV L+  LK ERD  F+YLGLQ LYDRYFLH++G+
Sbjct: 251 GDYFKAYIATGIASELLDRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGT 310

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA GLAL+E ++E +A+EFY LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 311 RFELPQAFFMRVACGLALREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCF 370

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN
Sbjct: 371 LTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 430

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFM R
Sbjct: 431 DTAIAVNQGGKRKGAVCAYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTR 490

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V Q+ GWTLFSPDE  DLHDL G+ F   YE YE +A+RGE++VF+++ A  LWRKMLTM
Sbjct: 491 VEQDGGWTLFSPDETPDLHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTM 550

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S+ E AVCNLGSINL+ H  
Sbjct: 551 LFETGHPWITFKDPCNLRSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLV 610

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N   D+ +LA ++ T +R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +
Sbjct: 611 NGAIDHARLARSVGTGMRMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRL 670

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS +AV  ADESME +S+ AISASV+LA ERG Y SF+GSLW +GV P+DSI  +   
Sbjct: 671 PYASEQAVAFADESMESVSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAA 730

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R+ RL WD L+ RVK +GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 731 RALPVEVDRSFRLDWDGLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYV 790

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN++LVN+LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 791 KSNMSGDFTVVNTYLVNDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEI 850

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLIE+A+RRQKWIDQ+QSLNLYL  P+GKKLD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 851 DSAWLIEAAARRQKWIDQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHV 910

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIP------------SSCT-SDTECEVCQ 954
           EKSTLKG DGKLNAV      S+  ++  P             +C   D  CEVCQ
Sbjct: 911 EKSTLKGTDGKLNAV------SAGLAMDTPRAVAVACGAVAGQACAIDDPTCEVCQ 960


>gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 969

 Score = 1258 bits (3256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/954 (63%), Positives = 738/954 (77%), Gaps = 15/954 (1%)

Query: 16  PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           PSL  A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVEG  A+ S RV DI+ 
Sbjct: 16  PSLSAAATAPSSEPACQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVT 75

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R YVLYREER+  RA   
Sbjct: 76  GLTDQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKAQ 135

Query: 134 HSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            SKS    A      L++   DG+LI+ ++ RL  +VEEAC+GL DVS+  +L+ET++N+
Sbjct: 136 ESKSKKGGAAAAKAALRMKSADGSLIALDTPRLTAVVEEACAGLGDVSASAILTETHRNL 195

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+S  +L  A I ++RTL+E +P+YAKV+AR LL+K+RRE L+ V  + ++AT  EM 
Sbjct: 196 YDGISVDELAQAPILAARTLVETDPDYAKVSARLLLDKMRREALSFVAGRLEQATQAEMA 255

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+YLGLQ LYDRYFLH+
Sbjct: 256 ERYADYFLSYVRAGIDHELLDPEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHV 315

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT  PQLS
Sbjct: 316 RSVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLS 375

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK
Sbjct: 376 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 435

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF
Sbjct: 436 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 495

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE++V +++ AV LWR+M
Sbjct: 496 MQRVEEDGMWTLFSPDETPDLHDLTGKAFAGRYAYYEEKAARGELRVTKQVRAVDLWRRM 555

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL+ 
Sbjct: 556 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVN 615

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           H  + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++
Sbjct: 616 HIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGIMGFQDALNI 675

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +PYAS EAV  ADESME I++HAIS SVELA ERG Y S++GSLW +GV P+DS+ L+
Sbjct: 676 LRLPYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGSLWSKGVLPLDSLELV 735

Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            E R  E+ ++R+SRL WD L++RV TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQN
Sbjct: 736 DEARGAEVDIDRSSRLDWDSLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 795

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATA
Sbjct: 796 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATA 855

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSA
Sbjct: 856 FEIDSAWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSA 915

Query: 909 TSVEKSTLKGVDGKLNAVPVT--------DPNSSTHSLGIPSSCTSDTECEVCQ 954
           T VEKSTLKG DGKLNAV  +            ++ S G  S    D  CE CQ
Sbjct: 916 THVEKSTLKGTDGKLNAVAASVSVAPLNGHAAVASASEGWKSCRVDDPTCEACQ 969


>gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
 gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
          Length = 967

 Score = 1253 bits (3241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/948 (64%), Positives = 739/948 (77%), Gaps = 12/948 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           SLA P P +   +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV + ++ LT
Sbjct: 22  SLA-PSPSE-PAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEAVEQLT 79

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           ++ V  L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA   S 
Sbjct: 80  QEVVGTLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAADRAST 139

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           + +   P L++ + +G  +  + KR E+I+ EAC GL  V    VL+E  +N+YDG+S+ 
Sbjct: 140 TVSSNEPTLQMTLANGARVPLDLKRFELIIREACEGLDAVDPAPVLAEARRNLYDGISQD 199

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L  A I ++RTL+E+EPNYA V+AR LL+KLR EVL+ V+  P  A+  +M   Y EYF
Sbjct: 200 ELALASIMAARTLVEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATRYAEYF 259

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             YI+ G++A LL   +   DL  LA+ LK ERD  F++LGLQ LYDRYFLH++G+RIE+
Sbjct: 260 PAYIKTGIEAELLDPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHGARIEL 319

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSCFLTTV
Sbjct: 320 PQAFFMRVAMGLAMREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTV 379

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLKVANDTA+
Sbjct: 380 ADDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAI 439

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV Q+
Sbjct: 440 AVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQD 499

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSPDE  +LHDLYG  F+ AYE YE +A RGE++VF+++ A  LWR+MLTMLFET
Sbjct: 500 GEWTLFSPDETPELHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLTMLFET 559

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGSINLL H      
Sbjct: 560 GHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGL 619

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  IP AS
Sbjct: 620 DQNKLKRTITTAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQRIPIAS 679

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             AV  AD SME IS+HAISAS +LA ERG Y SF GSLW QG+ PIDS+ +L++ RD  
Sbjct: 680 EAAVAFADASMEIISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSKSRDGT 739

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           A+N +  L W  L++RV+  GMRNSN MAIAPTATI+NICGV+QSI+PSYQNL+VKSNMS
Sbjct: 740 ALNASMTLDWTGLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFVKSNMS 799

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDFTVVN  LV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE+D  WL
Sbjct: 800 GDFTVVNEHLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEVDTSWL 859

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           IESA+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKSTL
Sbjct: 860 IESAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTL 919

Query: 917 KGVDGKLNAV---------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           KG DGKLNAV         P+  PN++   L    +C+ D  +CE CQ
Sbjct: 920 KGTDGKLNAVSASGMLAHAPIIVPNATAPDLDGVKACSIDNPDCEACQ 967


>gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 956

 Score = 1249 bits (3233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/954 (62%), Positives = 738/954 (77%), Gaps = 15/954 (1%)

Query: 16  PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           PSL  A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVEG  A+ S RV DI+ 
Sbjct: 3   PSLSAAAAMPPSEPAYQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVA 62

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-- 131
            LT Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R YVLYREER+  RA   
Sbjct: 63  ELTGQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKSQ 122

Query: 132 QSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           +S +K     A K  L++   DG+LI+ ++KRL  +V EAC+GL DVS+  +L+ET++N+
Sbjct: 123 ESKAKKGNTTAAKTVLRMKSADGSLIALDTKRLATVVVEACAGLGDVSASAILAETHRNL 182

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ V  + ++AT  EM 
Sbjct: 183 YDGISVDELALAPILAARTLVETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMA 242

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+YLGLQ LYDRYFLH+
Sbjct: 243 ERYADYFRAYVRTGIDNELLDLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHV 302

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            G R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT  PQLS
Sbjct: 303 RGVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLS 362

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK
Sbjct: 363 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 422

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF
Sbjct: 423 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 482

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE++V +++ AV LWR+M
Sbjct: 483 MRRVEEDGMWTLFSPDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRM 542

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL++
Sbjct: 543 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVS 602

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           H  + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++
Sbjct: 603 HIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNI 662

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +PYAS  AV  ADESME I+++AIS SVELA ERG Y S++GSLW +G+ P+DS+ L+
Sbjct: 663 LRLPYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLV 722

Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            E R   + ++R+SRL WD L++ V TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQN
Sbjct: 723 DEARGAAVDIDRSSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 782

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATA
Sbjct: 783 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATA 842

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSA
Sbjct: 843 FEIDSSWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSA 902

Query: 909 TSVEKSTLKGVDGKLN-------AVPVTD-PNSSTHSLGIPSSCTSDTECEVCQ 954
           T VEKSTLKG DGKLN       A P+     +++ S G  S    D  CE CQ
Sbjct: 903 THVEKSTLKGTDGKLNAVAASVSAAPLNGHATAASASEGWKSCRIEDPTCEACQ 956


>gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase, subunit alpha [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 956

 Score = 1246 bits (3223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/929 (63%), Positives = 720/929 (77%), Gaps = 6/929 (0%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RNG VT FD SKIS A+ KAF+AVEG  A+ S RV + +  LT Q V  L +    
Sbjct: 30  QVIRRNGSVTPFDASKISVALTKAFLAVEGGRAAASRRVHETVDGLTSQIVVALTRRGVQ 89

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIE+IQDQVE +LM+  HHK+ R YVLYREER   RAA++ +    P  P + +  
Sbjct: 90  ERTFHIEEIQDQVELALMRGEHHKVARAYVLYREERKRERAAETAAP--IPTMPSISVKS 147

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG+L   ++ RL  ++EE+C+GL DVS++ +LSET +N+YDG++  +L  A + ++RTL
Sbjct: 148 KDGSLAPLDAARLRKLIEESCAGLADVSAEAILSETQRNLYDGITRDELADAPVLAARTL 207

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE EPNY  VTAR L++KLRRE L+ V  +  +A   EM   YPEYF  +I +G+ A LL
Sbjct: 208 IETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPEYFRAFIAKGIVADLL 267

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  FDL  L   LK ERD  F+YLGLQ LYDRYFL  +G R E+PQAFFMRVAMGLA
Sbjct: 268 DPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRFELPQAFFMRVAMGLA 327

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E ++E +A+EFY+L+S+F FMCSTPTLFN+GT  PQLSSCFLTTVPDDL GIF ++++
Sbjct: 328 LREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLTTVPDDLDGIFKSIKD 387

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVC
Sbjct: 388 NALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVC 447

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWHID+EEFLDLRKN GDDRRRTHDMNTA+WIPDLFM+RV ++  WTLFSPDE  D
Sbjct: 448 AYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVAEDGQWTLFSPDETPD 507

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDLYG  F   YE YE +A+R E+KV R++ AV LWR+MLTMLFETGHPWITFKDPCN+
Sbjct: 508 LHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLFETGHPWITFKDPCNL 567

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQH G+VHSSNLC EITLN+S++E AVCNLGSINL+AH  N+  D+DKL  T++TA+
Sbjct: 568 RSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTNDGVDFDKLERTVKTAM 627

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +TI +A++SN  HR +G+GLMGFQ AL  L I Y S EAV  AD SME 
Sbjct: 628 RMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINYGSEEAVAFADTSMEA 687

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748
           ISFHAISASV+LA ERG Y SF GSLW QG+ PIDSI LL   R  +L ++ +S L WD 
Sbjct: 688 ISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARGTDLRLDTSSTLDWDG 747

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+ RV+T GMRNSN MAIAPTATI+NICGV+QSI+P+++NLYVKSNMSGDFTVVN FLV 
Sbjct: 748 LRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKSNMSGDFTVVNPFLVR 807

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LK R LWDE MISDLKY DGS+G I+RIP+DLK ++ATAFEID  WL+++A+RRQKWID
Sbjct: 808 DLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDAHWLVDAAARRQKWID 867

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           Q QSLNLY+  P+G+KLD +YR AW  GLKTTYYLRS+SAT VEKSTLKG DGKLNAV  
Sbjct: 868 QGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEKSTLKGTDGKLNAVSS 927

Query: 929 TDPNSS---THSLGIPSSCTSDTECEVCQ 954
           +  +S+     ++   +    D  CE CQ
Sbjct: 928 SVHHSAPENIEAMAGKACLIDDPTCEACQ 956


>gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 966

 Score = 1244 bits (3220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/954 (62%), Positives = 734/954 (76%), Gaps = 15/954 (1%)

Query: 16  PSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           PSL  A   P      QVI+RNG V+ FD SKI+ A+ KAF+AVEG  A+ S RV DI+ 
Sbjct: 13  PSLPAAAAMPSSEPAYQVIRRNGSVSPFDSSKIAVALTKAFLAVEGNSAAASRRVHDIVT 72

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+Q V  L + + +    HIEDIQDQ E +LM+S HHK+ R YVLYREER+  RA   
Sbjct: 73  ELTDQIVASLTRRSDAGRTFHIEDIQDQAELALMRSAHHKVARAYVLYREERARERAKAQ 132

Query: 134 HSKSDAPI----APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            S +         P L++   DG++   +++RL  +VEEAC+GL+ VS++ +L+ET++N+
Sbjct: 133 ESNAKKSNAAAATPALRMKSVDGSMAPLDTRRLAAVVEEACAGLEGVSAEAILTETHRNL 192

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ +  +P++AT  EM 
Sbjct: 193 YDGISADELALAPILAARTLVETDPDYAKASARLLLDKLRREALSLIAGRPEQATQAEMT 252

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y EYF  Y++ G++  LL   +  FDL  LA  LK ERD  F+YLG Q LYDRYFLH+
Sbjct: 253 GRYAEYFLGYVQTGIENELLDPEIGRFDLDRLAAALKPERDLQFDYLGFQTLYDRYFLHV 312

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            G+R E+PQAFFMRVA GLAL+E ++E +A+ FYNLLSSF FM STPTLFN+GT+  QLS
Sbjct: 313 RGTRFELPQAFFMRVACGLALREIDREDKAIAFYNLLSSFDFMASTPTLFNAGTQRAQLS 372

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLK
Sbjct: 373 SCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLK 432

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           VANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLF
Sbjct: 433 VANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLF 492

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV ++  WTLFSP+E  DLHDL GK F   Y +YE +A RGE++V +++ AV LWR+M
Sbjct: 493 MQRVEEDGVWTLFSPNETPDLHDLTGKAFAERYAHYEGKAARGEMRVTKQVRAVDLWRRM 552

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           LTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL+ 
Sbjct: 553 LTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVN 612

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           H  + + D+  LA T++TA+R+LDNV+++N +TI +A+ SN  HR +GLGLMGFQ AL++
Sbjct: 613 HLHDGKLDHAHLARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPVGLGLMGFQDALNI 672

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +PYA  EAV  ADESME IS+ AIS SV+LA ERG Y S++GSLW +G+ P+DS+ L+
Sbjct: 673 LRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLWSKGILPLDSLALV 732

Query: 730 AEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            E R   + ++R+SRL W+ L++RV T+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQN
Sbjct: 733 DEARGAPIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNICGVSQSIEPAYQN 792

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DG +  I+R+PDDLK ++ATA
Sbjct: 793 LYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRIDRVPDDLKALYATA 852

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WLI++A+RRQKWIDQAQSLNLY+ +PSGKKLD +YR AW  GLKTTYYLRSRSA
Sbjct: 853 FEIDSAWLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKRGLKTTYYLRSRSA 912

Query: 909 TSVEKSTLKGVDGKLNAVPV---TDP-----NSSTHSLGIPSSCTSDTECEVCQ 954
           T VEKSTLK  DGKLNAV     T P      S   S G  +    D  CE CQ
Sbjct: 913 THVEKSTLKVTDGKLNAVSASVSTAPLNGHAASVAESDGWKACRIDDPTCEACQ 966


>gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 974

 Score = 1240 bits (3208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/941 (62%), Positives = 721/941 (76%), Gaps = 17/941 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+R+G V+ FD SKI+ A+ KAF+AVEG  A+ S RV D +  LT+Q V  L +    
Sbjct: 35  QVIRRSGEVSPFDASKIAVALTKAFLAVEGSNAAASRRVHDTVAELTDQIVANLTRRVGP 94

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQ E +LM+S HHK+ R YV+YREER+  RA  + ++   P+AP L+   
Sbjct: 95  GRTFHIEDIQDQAELALMRSEHHKVARAYVIYREERTRERAKAAAAQVK-PVAPALRTKS 153

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DGTL   + +RL  I+ EAC+GL  VS   VL+ET +N+YDG+S+ +L  A I ++R  
Sbjct: 154 ADGTLHLIDMQRLAAIIAEACAGLDGVSVDAVLAETQRNLYDGISDDELALAPILAARIF 213

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +E EP+YAKV+AR LL+KLRRE L+ V  +P +AT  +M   Y +YF  Y++ G+   L+
Sbjct: 214 VETEPDYAKVSARLLLDKLRREALSFVEGRPHQATQAQMAERYADYFSAYVKAGIAHELI 273

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  FD+  LA  +K ERD  F+YLGLQ LYDRYFLH++G+R E+PQAFFMRVA G+A
Sbjct: 274 DPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLYDRYFLHVHGTRFELPQAFFMRVACGIA 333

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E ++E +A+EFY+LLSSF FM STPTLFN+GT  PQLSSCFLTTVPDDL GIF ++++
Sbjct: 334 LREVDREAKAIEFYDLLSSFDFMASTPTLFNAGTLRPQLSSCFLTTVPDDLDGIFKSIKD 393

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQG++PFLKVANDTA+AVNQGGKRKGAVC
Sbjct: 394 NALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQGIVPFLKVANDTAIAVNQGGKRKGAVC 453

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV QN  WTLFSPDE  D
Sbjct: 454 AYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQNGPWTLFSPDETPD 513

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDL G+ F   Y  YE +A RGE++V ++I AV LWR+MLTMLFETGHPWITFKDPCN+
Sbjct: 514 LHDLTGRAFAERYAFYEARAARGELRVTKQIRAVDLWRRMLTMLFETGHPWITFKDPCNL 573

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQH GVVHSSNLCTEITLN+S  E AVCNLGS+NL+ H  + + D  +L  T+ TA+
Sbjct: 574 RSPQQHCGVVHSSNLCTEITLNTSEREVAVCNLGSVNLVNHVVDGRLDCARLERTVTTAM 633

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +TI +A+ SN  HR +GLGLMGFQ AL++L +PYAS EAV  ADESME 
Sbjct: 634 RMLDNVIDVNFYTIPEARASNLRHRPVGLGLMGFQDALNILRLPYASDEAVAFADESMEA 693

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748
           I++ +ISASV+LA ERG Y+S+ GSLW QG+ P+DSI LL E R   + ++R SRL W+ 
Sbjct: 694 IAYWSISASVDLAAERGRYASYDGSLWSQGILPLDSIDLLDEARGAAIEVDRGSRLDWEA 753

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+KRV   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV 
Sbjct: 754 LRKRVTATGMRNSNVMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNTHLVR 813

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEID  WLIE+A+RRQKWID
Sbjct: 814 DLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDLKALYATAFEIDATWLIEAAARRQKWID 873

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QAQSLNLYL  PSGK LD +YR AW  GLKTTYYLRSRSAT VEKSTL+G DGKLNAV  
Sbjct: 874 QAQSLNLYLANPSGKTLDALYRLAWRRGLKTTYYLRSRSATHVEKSTLRGTDGKLNAVSA 933

Query: 929 -------TDP-------NSSTHSLGIPSSCT-SDTECEVCQ 954
                   +P       N    + G   +C   D  CE CQ
Sbjct: 934 IILPTASAEPSRSNGAGNGHAATEGWGKACAIDDPGCEACQ 974


>gi|220935778|ref|YP_002514677.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 971

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/931 (62%), Positives = 719/931 (77%), Gaps = 9/931 (0%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NKS 89
           VI+RNG VT+FD SKI  AI KAF+AVEG  A+ S R+ DI+  L EQ    L +    S
Sbjct: 43  VIRRNGKVTAFDASKIKVAITKAFLAVEGGNAAASRRIHDIVAELAEQVCENLFRRAGGS 102

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK--LKI 147
           A+ VHIEDIQDQVE +LM+ GHHKI R YVLYRE+++  RAA++ ++  A  A    + +
Sbjct: 103 AVTVHIEDIQDQVELALMRGGHHKIARAYVLYREQQAQKRAAEAATRKPARQAEAAVIHV 162

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
              DGT    ++ RL  +VEEAC+GL+ V  +++L+E  +N++DG++E D+ TAL+ S+R
Sbjct: 163 TRPDGTRAPLDTARLVKVVEEACAGLEAVDGQLILNEAQRNLFDGVAEKDVGTALVMSAR 222

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            LIEKEPNY++VTAR L++ LRRE L+ +   PQ AT  EM   YPEYF  Y++   +  
Sbjct: 223 VLIEKEPNYSQVTARLLMDTLRREALSFIAGLPQAATQAEMTQRYPEYFKAYVKRAAELE 282

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  +DL  L   LK ERD  F YLGLQ LYDRYF+H  G R E+PQAFFMRVAMG
Sbjct: 283 LLDSELTRYDLDRLGAALKPERDLQFTYLGLQTLYDRYFIHSGGVRFELPQAFFMRVAMG 342

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSC+LTTVPDDL GIFGA+
Sbjct: 343 LAIHEIDREGRAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFGAI 402

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 403 KDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 462

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+DVEEF++LRKNTGDDRRRTHDMN+ANWIPDLFMKRV +   WTLFSP+E 
Sbjct: 463 VCAYLETWHVDVEEFIELRKNTGDDRRRTHDMNSANWIPDLFMKRVAEEGEWTLFSPNET 522

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G+ FE  Y  YE +A RGEIKVF+K+ AV LWRKML MLFETGHPW+TFKDPC
Sbjct: 523 PDLHDLVGEAFEQRYAEYEAKAARGEIKVFKKLKAVDLWRKMLAMLFETGHPWMTFKDPC 582

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL AH   N  + +KL  T+ T
Sbjct: 583 NLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVDENGLNLEKLERTVST 642

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVID N +++ +A++SN  HR +GLG+MGFQ AL+   IPYAS +AVE AD SM
Sbjct: 643 AMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDALYQQRIPYASEDAVEFADRSM 702

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-RLPW 746
           E +S++AI AS +LA+ERG Y SF GSLW QGV PIDSI LLA+ R +     TS    W
Sbjct: 703 EAVSYYAIKASTDLAEERGRYQSFDGSLWSQGVLPIDSIELLAKSRGQYLQQDTSMTFDW 762

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ RVKT+GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N  L
Sbjct: 763 DSLRDRVKTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPNL 822

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           VN+LK R LWDE M++DLKY+DGS+  I+R+P DLK+++ATAFE+D  WL+E+ASRRQKW
Sbjct: 823 VNDLKARKLWDEVMVNDLKYYDGSVQPIDRVPADLKQLYATAFELDARWLVEAASRRQKW 882

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--GKLN 924
           +DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT VEKST+       KLN
Sbjct: 883 LDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTVADASRANKLN 942

Query: 925 AVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           A  V   +++  +   P  C+  D ECE CQ
Sbjct: 943 A--VKGADAAAPATEAPKMCSILDPECEACQ 971


>gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thioalkalivibrio sp. K90mix]
 gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 964

 Score = 1211 bits (3133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/952 (60%), Positives = 722/952 (75%), Gaps = 15/952 (1%)

Query: 15  FPSLAYPFPEKIKGV----QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +P  A P  E +       QVI+RNG VT FD SKI  A+ KAF+AVEG  A+ S R+ +
Sbjct: 16  YPPQAEPSAEVLATSPGQHQVIRRNGKVTGFDASKIEVAVTKAFLAVEGGNAAASRRIHE 75

Query: 71  IIKNLTEQTVTRLLQH-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + K +  Q V  L +      + VHIEDIQDQVE +LM+ GHHK+ R YV+YRE+++  R
Sbjct: 76  VSKEVAGQVVDSLFRRAGTQGMTVHIEDIQDQVELALMRGGHHKVARAYVIYREQQAQKR 135

Query: 130 AAQSHSKS--DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
           AA++  +S  +   A  L +   DGT    +  RL+ +V EAC G++ V  + +L+E  +
Sbjct: 136 AAEAAEQSPEEQEAAAALNVTRADGTQAPLDEARLQAVVAEACDGIEHVDGEKILTEARR 195

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N++DG++E D+ TAL+ ++R +IEKEPNY++VTAR L++ LRRE L+ V+ +P++AT  +
Sbjct: 196 NLFDGVAEKDVATALVMAARVMIEKEPNYSEVTARLLMDALRREALSFVHGRPEEATQAQ 255

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           +   Y EYF  YI       L+   +  +DL  L   +K ERD  F YLGLQ LYDRYF+
Sbjct: 256 LAERYAEYFGAYIRRAADLELVDSELTRYDLDKLGAAIKPERDLQFTYLGLQTLYDRYFI 315

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H +G+R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQ
Sbjct: 316 HSDGTRFELPQAFFMRVAMGLAINEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQ 375

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LT+VPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PF
Sbjct: 376 LSSCYLTSVPDDLDGIYSAIRDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPF 435

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF++LRKNTGDDRRRTHDMN+ANWIPD
Sbjct: 436 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFIELRKNTGDDRRRTHDMNSANWIPD 495

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV ++  WTLFSP+E  DLHDL G +FE  Y  YE +A RGE++V + + AV LWR
Sbjct: 496 LFMKRVAEDGDWTLFSPNETPDLHDLVGTDFEKRYCEYEEKAARGELRVHKTMKAVDLWR 555

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL
Sbjct: 556 KMLGMLFETGHPWMTFKDPCNLRSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSINL 615

Query: 608 LAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            AH     + D DKL  T+ TA+R+LDNVID N +++ +A++SN  HR +GLG+MGFQ A
Sbjct: 616 AAHINEAGELDQDKLEQTVNTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDA 675

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L +PYAS  AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QG+ PIDS+
Sbjct: 676 LYKLRMPYASEAAVEFADTSMEAVSYYAIKASTDLAEERGRYESFPGSLWSQGILPIDSV 735

Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             LAE R D L M+ T RL WD+L+KRVK +GMRNSN MAIAPTATI+NICGVSQSI+P+
Sbjct: 736 EKLAETRGDYLQMDTTQRLEWDKLRKRVKKVGMRNSNTMAIAPTATISNICGVSQSIEPT 795

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           YQNL+VKSN+SG+FTV+N +LV +LK R+LWDE M++DLKY+DGS+  ++R+PDDLK ++
Sbjct: 796 YQNLFVKSNLSGEFTVINPYLVRDLKDRELWDEVMVNDLKYYDGSVQPLDRVPDDLKALY 855

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+D  WL+E+ASRRQKWIDQAQSLNLY+ EPSG KLD +Y+ AW+ GLKTTYYLRS
Sbjct: 856 ATAFELDTRWLVEAASRRQKWIDQAQSLNLYMAEPSGPKLDALYKLAWVRGLKTTYYLRS 915

Query: 906 RSATSVEKSTLKGVD--GKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
             AT VEKST+       KLNAV      S   +   P +C+  D +CE CQ
Sbjct: 916 MGATHVEKSTVADSSRANKLNAVSGGQQASEPEA---PKACSILDPDCEACQ 964


>gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 972

 Score = 1193 bits (3087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/901 (62%), Positives = 695/901 (77%), Gaps = 6/901 (0%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++  LT+Q  T LL+H 
Sbjct: 17  AIRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAELTQQVETTLLRHA 76

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                +HIE IQD VE +LM+  HHK+ R YVLYR+ER+  R A   + ++A     L +
Sbjct: 77  GPETALHIEQIQDIVELALMRGEHHKVARAYVLYRDERAKAREAVKPATTEA----TLNV 132

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
              DG L   +  R+  +V EA +GL+DV+++ VL+E  +N+YDG+S  +L  A I ++R
Sbjct: 133 KGTDGVLRPLDWARVSHVVGEAVAGLEDVTAEPVLAEAKRNLYDGISADELALAQIMAAR 192

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            L+E+EPNY+ V+AR LL+KLR E L+ +   P+ A+  EM   YP YF  Y+   ++  
Sbjct: 193 VLVEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEYPAYFRAYLRRAIELE 252

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H +G+R E+PQAFFMRVAMG
Sbjct: 253 LVDAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGTRFELPQAFFMRVAMG 312

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++E ++E RA+EFY LLSSFHFM STPTLFNSGT  PQLSSCFLTTV DDL  IF A 
Sbjct: 313 LAIREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIFQAY 372

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTAVAVNQGGKRKGA
Sbjct: 373 KNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQGGKRKGA 432

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
            CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV  +A WTLFSP+E 
Sbjct: 433 ACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPNET 492

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYG EF   Y  YE  ADRGEIKVFR+  AV LWR+MLTMLFETGHPWITFKDPC
Sbjct: 493 PDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTMLFETGHPWITFKDPC 552

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++SEE AVCNLGS+NLL H      D  +L  T+RT
Sbjct: 553 NLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVTPEGLDTKRLEKTVRT 612

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  + +P+AS EAV+ AD SM
Sbjct: 613 AVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVKFADVSM 672

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745
           E +S++AISAS +LA+ERG Y SF+GSLW +G+ PIDS+ LL + R  D L ++ +S L 
Sbjct: 673 EHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVDTSSTLD 732

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNL+VKSNMSGDFTVVN  
Sbjct: 733 WAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKSNMSGDFTVVNPH 792

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+  W++++ S RQK
Sbjct: 793 LVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDAGSVRQK 852

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT VEKSTL+G DGKLNA
Sbjct: 853 WIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATHVEKSTLRGTDGKLNA 912

Query: 926 V 926
           V
Sbjct: 913 V 913


>gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
          Length = 955

 Score = 1190 bits (3079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/943 (59%), Positives = 714/943 (75%), Gaps = 14/943 (1%)

Query: 14  AFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           + P+ ++  PE + + + VI+R+G V+ FDP KI+ A+ KA++AVEG  AS S R+++ +
Sbjct: 25  SLPAESFEHPESRARDLHVIRRDGQVSGFDPGKITVAMTKAYLAVEGANASGSQRIRETV 84

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + L  Q V  L +   +   VHIEDIQDQVE +LM++G H++ R YVLYREER+  RA Q
Sbjct: 85  ERLVGQVVEALTRRQPAGGRVHIEDIQDQVELALMRAGEHRVARAYVLYREERA--RARQ 142

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             ++  A  A +L++   DG  +  +  RL  IVEE+C  +  V  + +++ET++N+YDG
Sbjct: 143 DQAEPVAAQAERLRVTRADGGQVPLDEARLRRIVEESCQRIAGVEPEAIVAETHRNLYDG 202

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           + E++L TAL+  +RTLIE+EP Y+ V A  LL+ LRRE L+ +      AT  EM   Y
Sbjct: 203 IPEAELGTALVMCARTLIEREPGYSYVAAGLLLDTLRREALSFLGGVEAGATFEEMAKRY 262

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           P+YF  Y+  GV+  LL   +++FDL  LA  L+  RD  F YLGLQ LYDRYFLH +G+
Sbjct: 263 PDYFIAYVRRGVELELLDPRLLEFDLERLARVLEPARDRQFGYLGLQTLYDRYFLHYDGT 322

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E+PQAFFMRVAMGLAL E ++E+RA EFY LL+SF FM STPTLFN+GTR PQLSSC+
Sbjct: 323 HFELPQAFFMRVAMGLALNEIDREERAAEFYRLLASFDFMSSTPTLFNAGTRRPQLSSCY 382

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L+T+PDDL GI+ A+++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKVAN
Sbjct: 383 LSTIPDDLDGIYSAIRDNALLSKFAGGLGNDWTPVRALGAHIKGTNGRSQGVVPFLKVAN 442

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGG+R+GAVCAYLE WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDLFM+R
Sbjct: 443 DTAVAVNQGGRRRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMRR 502

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V   A WTLFSPDE  DLHDLYG  FE  Y  YE QA+RGE++ ++++SAVALWR+ML+M
Sbjct: 503 VIDEADWTLFSPDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVSAVALWRRMLSM 562

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKD CN RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGS+NL AH  
Sbjct: 563 LFETGHPWITFKDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVG 622

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L  T+RTA+R+LDNVIDIN +++ +A+++N  HR +GLG+MGFQ AL+ L +
Sbjct: 623 AEGIDAARLERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVMGFQDALYRLGL 682

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS EAV+ AD SME IS++AI AS ELAQERGAY+SF GSLW +G+ PIDSI LLAE 
Sbjct: 683 PYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGILPIDSIRLLAEQ 742

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R E L M+ ++ L WD L++R++  GMRNSNC+AIAPTATIANI GVS SI+P+Y+NLYV
Sbjct: 743 RGEPLTMDTSTTLDWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSPSIEPTYRNLYV 802

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTVVN  LV  LK R LWD  +++DLKY DGS+  IER+P+ +K ++ TAFEI
Sbjct: 803 KSNLSGEFTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEPIKALYTTAFEI 862

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           DP WL+E+ASRRQKW+DQ+QSLNLY+ E SG KLD +YR AW  GLKTTYYLRS  AT V
Sbjct: 863 DPNWLVEAASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKTTYYLRSLGATHV 922

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           EKST+   DG LN V          +   P+    D ECE CQ
Sbjct: 923 EKSTV--ADGALNRV--------AAAPAAPACAVDDPECEACQ 955


>gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio
           japonicus Ueda107]
 gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus
           Ueda107]
          Length = 978

 Score = 1184 bits (3064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/951 (59%), Positives = 717/951 (75%), Gaps = 28/951 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  FD SKI+ A+ KAF+AVEG  A+ S RV++ + NLT+Q      +   
Sbjct: 31  LRVIKRNGTVVPFDASKIAIAMTKAFLAVEGGTAAASTRVRETVDNLTKQITATFKRRMP 90

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SKSDA-PIAPKLK 146
           S   +HIE+IQDQVE  LM++G  K+ R+YVLYREE + +R AQ   +K++A P  P + 
Sbjct: 91  SGGTIHIEEIQDQVELILMRAGEQKVARDYVLYREEHARLRRAQKEVNKTEADPDYPAMS 150

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   DGT    +  R+  IV EAC+GL  V  K +L E  +N+YDG++E D+ T+L+ ++
Sbjct: 151 VTQADGTRAPLDIARMRTIVSEACAGLAGVEEKAILDEAMRNLYDGVAEKDVNTSLVITA 210

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTL+EKEPNY   TAR LL+KLR E L  +   P  AT  +M+  Y      YI++GV+ 
Sbjct: 211 RTLVEKEPNYTYATARLLLDKLRAEALGFLGVAPS-ATQSDMELYYARALPVYIQKGVEL 269

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            L+   +++FDL  L   L  +RD  F YLGLQ LYDRYF+H + +RIE+PQ FFMRVAM
Sbjct: 270 ELISPELLNFDLDKLGKALIADRDLQFTYLGLQTLYDRYFIHSDSTRIELPQIFFMRVAM 329

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL+E ++E+RA+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPDDL+GI+GA
Sbjct: 330 GLALQEDKREERAIEFYRLLSSFDYMSSTPTLFNSGTLRPQLSSCYLTTVPDDLHGIYGA 389

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG
Sbjct: 390 IQDNAMLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 449

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV ++  WTLFSP++
Sbjct: 450 AVCAYLETWHMDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEDQEWTLFSPND 509

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHDLYGK FE  YE+YE+ A +G++++F+ + A+ LWRKML MLFETGHPWITFKDP
Sbjct: 510 VPDLHDLYGKAFEERYEHYEQLAAQGKVRLFKTVRALDLWRKMLGMLFETGHPWITFKDP 569

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
           CN+RSPQQH GVVHSSNLCTEITLN+ + +E AVCNLGS+NL  H  N + D  KL  T+
Sbjct: 570 CNLRSPQQHAGVVHSSNLCTEITLNTKAGDEIAVCNLGSVNLAQHIVNGKLDLAKLEKTV 629

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            TA+R+LDNVIDIN + ++ +K+SN  HR IGLG+MGFQ AL+   I Y+S  AV+ AD 
Sbjct: 630 STAIRMLDNVIDINYYAVDTSKQSNLRHRPIGLGIMGFQDALYEQRIAYSSQAAVDFADT 689

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743
           SME +S++AI AS +LAQERG YS+F+GSLW +GV PIDSI +LA+ R E  + ++R+  
Sbjct: 690 SMEAVSYYAIKASCQLAQERGKYSTFEGSLWSKGVLPIDSIDILAQNRGENYIKVDRSKT 749

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD L+  VKT GMRNSN MAIAPTATI+NI GV+QSI+P+YQNLYVKSN+SG+FTVVN
Sbjct: 750 FDWDSLRTEVKTKGMRNSNVMAIAPTATISNITGVTQSIEPTYQNLYVKSNLSGEFTVVN 809

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV++LK R LWD  M++DLKY++GS+  I+RIP+D+K I+ATAFE++P W++ESASRR
Sbjct: 810 PYLVHDLKDRGLWDSVMVNDLKYYEGSVQKIDRIPEDMKAIYATAFEVEPKWIVESASRR 869

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLNLY+   +GKKLD  YR AW  GLKTTYYLR+ +AT+ EKST+    G L
Sbjct: 870 QKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALAATTTEKSTIN--TGAL 927

Query: 924 NAVPVT-------------------DPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           NAV  T                   +  S   +  +P +C+ D  +CE CQ
Sbjct: 928 NAVSATGNSGLSAAPAAAKPVVADIEEASFAEAAPVPKACSIDNPDCEACQ 978


>gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 957

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/929 (60%), Positives = 717/929 (77%), Gaps = 4/929 (0%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RN  ++ FDPSKI+ A+ KAF+AVEG  A+ S RV+DI++      V  L +H  +
Sbjct: 29  QVIRRNRTLSPFDPSKIAVAMTKAFVAVEGSSAATSARVRDIVERRCVSVVEALTRHADA 88

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK-LKIM 148
              +HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ +R      ++   +A   ++  
Sbjct: 89  QRALHIEEIQDQVELALMRGGHHKVARAYVLYREERARLRRESGAEETTPGVATSTVRFR 148

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L + +   L +++++AC GL  VS+  VL ET +N+YDG++  +L  A I ++RT
Sbjct: 149 TATGELRTIDQGHLGLVIDDACDGLDGVSAVSVLDETLRNIYDGITADELSLAPILAART 208

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNYA V+AR LLE+LR EVL+ ++ +  +A   +M   Y +YF  ++  G+   L
Sbjct: 209 LVETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  LA+ L+ ERD AF YLGLQ LYDRY LH +G R+E+PQ FFMRVAMGL
Sbjct: 269 LDPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT   QLSSCFLTTVPDDL GIF +++
Sbjct: 329 ALREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSVK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+LAKYSGGLGNDW+ VRGLG++I GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 389 DNALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV ++  WTLFSPDEV 
Sbjct: 449 CAYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEVP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG+ F   Y  +E +A+RGE+ V +++ AV LWR+MLTMLFETGHPWITFKDPCN
Sbjct: 509 DLHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S  E AVCNLGS+NL  H +    D  +LA+T+RTA
Sbjct: 569 LRSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRTA 628

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ ALH+L +PYAS  A+  ADESME
Sbjct: 629 VRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESME 688

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747
           F+S+ AI+AS +LA ERG+Y SF GSLW +G+ PIDS+ LL   R+  L  +R+SRL W 
Sbjct: 689 FLSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGRLECDRSSRLDWS 748

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++RV+T G+RNSN +AIAPTATI+NICGVSQSI+PSY+NL+VKSNMSG+FT VN +LV
Sbjct: 749 SLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYLV 808

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK R LWDE M+ DLKY DGS+G I+R+P+DLK+++ TAFE+D  WLIE+A+RRQKWI
Sbjct: 809 QDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKWI 868

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY+  P+G++LD +YR AW  GLKTTYYLRS++AT VEKSTL   DGKLNAV 
Sbjct: 869 DQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAVA 928

Query: 928 VTDPN--SSTHSLGIPSSCTSDTECEVCQ 954
           V      S+  ++  P+    + +CE CQ
Sbjct: 929 VAAAQTVSAIEAVTAPACSIDNPDCEACQ 957


>gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
 gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
          Length = 961

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/941 (59%), Positives = 711/941 (75%), Gaps = 10/941 (1%)

Query: 19  AYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
           A P      G ++VIKRNG V +F+ SK+S AI KAF+AVEG  A+ S R+ + +  LTE
Sbjct: 26  ASPLAATAPGQLRVIKRNGTVVAFEDSKVSVAITKAFLAVEGGTAAASSRIHETVAKLTE 85

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SK 136
           Q V    +   S   +HIEDIQDQVE +LM++G HKI R+YV+YRE R+  RAA++  S 
Sbjct: 86  QVVATFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYREARAQERAAKAALSP 145

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                A ++ ++  DG+    + +R+  IV EAC GL DVS   ++ E  +N+YDG++  
Sbjct: 146 ESQQAAERINVVQADGSRSPLDIERVRTIVAEACEGLADVSEAAIIDEALRNLYDGVAAE 205

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++ TAL+ ++RTLIE+EPNY+   AR LL+ LR E L+ +    + AT  +M   YP   
Sbjct: 206 EVSTALVITARTLIEQEPNYSYAAARLLLDNLRAEGLSFM-GVAELATQQDMTIHYPAAL 264

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             +I+ G++  LL   + DFDL  L + L  ERD  F YLGLQ LYDRYF+H + +R E+
Sbjct: 265 KAFIKRGIELELLAPDLQDFDLEELGSALLPERDLQFSYLGLQTLYDRYFIHSDNTRFEL 324

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLA +E  K  RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTV
Sbjct: 325 PQIFFMRVAMGLAAREEAKNARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTV 384

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG++PFLKV NDTAV
Sbjct: 385 PDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAV 444

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +
Sbjct: 445 AVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDD 504

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP++V DLHDLYGK FE  Y+ YE  A  GE+K+ + + A +LWRKML M+FET
Sbjct: 505 GDWTLFSPNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLKAQSLWRKMLGMIFET 564

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL  H  N   
Sbjct: 565 GHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIENGVL 624

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + DKL STIRTA+R+LDNVIDIN +++ +A++SN  HR IG+G+MGFQ AL+ L + Y S
Sbjct: 625 NLDKLRSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVMGFQDALYKLDVAYGS 684

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
            +AV  AD+SME IS++AI AS ELA+ERG+YSS++GSLW QG+FP DS+ LL + R E 
Sbjct: 685 DQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIFPHDSLDLLIQHRGED 744

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + +NR   + W  LK +V   GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN
Sbjct: 745 YIQVNRDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSN 804

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTVVN +LV +LK R LWD+ M++DLKY+DGS+  I+RIPDDLK  +ATAFE++P 
Sbjct: 805 LSGEFTVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPDDLKAKYATAFEVEPR 864

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           WL++SASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTTYYLRS +AT  EKS
Sbjct: 865 WLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKTTYYLRSLAATGTEKS 924

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           T++   GKLNA  V+  +++     +P +C+  D +CE CQ
Sbjct: 925 TVES--GKLNA--VSSGSATPQPAPVPQACSLDDPDCEACQ 961


>gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
           borkumensis SK2]
 gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2]
          Length = 962

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/962 (59%), Positives = 722/962 (75%), Gaps = 24/962 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+    S+A   P +++   VIKRNG V  +D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQ----SIASTAPGQLR---VIKRNGKVVGYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178
           E+R+  RAA+  S +D P AP     + + M+DG+    +  RLE ++  ACSGL+DV++
Sbjct: 128 EQRASKRAAEQKS-TDLP-APTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNA 185

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L  + +
Sbjct: 186 DKIITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEALQFL-R 244

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++A+H EM  LY +    YI +G++  LL   + ++DL  L   L   RD  F YLGL
Sbjct: 245 VAERASHDEMNALYSDALKAYISKGIELELLSPQLAEYDLDALGAALDGNRDLQFSYLGL 304

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYF+H N +RIE+PQ FFMRVAMGLA +E  +E RA+EFYNLLSSF +M STPTL
Sbjct: 305 QTLYDRYFIHHNDTRIELPQCFFMRVAMGLAAEEDNREARAIEFYNLLSSFDYMSSTPTL 364

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FN+GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTN
Sbjct: 365 FNAGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTN 424

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G+SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 425 GRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHD 484

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MN+ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+
Sbjct: 485 MNSANWIPDLFMKRVINEEDWTLFSPNDTPDLHDLYGEAFEKAYTEYEAKTRSGELKLFK 544

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE A
Sbjct: 545 RLPAINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIA 604

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGS+NL  H   N  + +KL STI TAVR+LDNVIDIN +++ +AK+SN  HR +GL
Sbjct: 605 VCNLGSVNLAQHVDENGLNIEKLQSTINTAVRMLDNVIDINYYSVPQAKRSNMKHRPVGL 664

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MGFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW Q
Sbjct: 665 GIMGFQDALYKQGISYASSDAVTFADTSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQ 724

Query: 719 GVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           G+ PIDSI +L + R E    ++R+  L WD ++   K  GMRNSN MAIAPTATIANI 
Sbjct: 725 GILPIDSIDILVKQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANIT 783

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVSQSI+P+YQNLYVKSN+SG+FTVVN +LV  LK+R LWD  M++DLKY+DGS   IER
Sbjct: 784 GVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVKALKERGLWDNVMVNDLKYYDGSAQPIER 843

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+G
Sbjct: 844 IPADLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLG 903

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSLGIPSSCTSD-TECEV 952
           LKTTYYLR+  AT  EKST+   DGKLN V   P T P     +  +P +C+ D  +CE 
Sbjct: 904 LKTTYYLRAIGATQTEKSTIS--DGKLNQVSSGPET-PAEFNQAADVPKACSIDEPDCEA 960

Query: 953 CQ 954
           CQ
Sbjct: 961 CQ 962


>gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus
           capsulatus str. Bath]
 gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus
           capsulatus str. Bath]
          Length = 969

 Score = 1183 bits (3060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/942 (60%), Positives = 708/942 (75%), Gaps = 18/942 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+VI+RNG VT FD +KIS AI KAF+AVEG  A+ S R+ + ++ LT+  V  LL+   
Sbjct: 30  VRVIRRNGKVTGFDAAKISVAITKAFLAVEGGNAAASRRIHESVEELTDLVVRALLRRLP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147
               +HIEDIQDQVE +LM++GH K+ R YVLYREER+ +RA  Q+  K+       +++
Sbjct: 90  GGGTIHIEDIQDQVELALMRAGHQKVARAYVLYREERARLRAEKQNEGKAQGGAEDVVQV 149

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            ++DGT    ++ RL  +VEEAC GL DV    ++ ET +N++DG+ E ++   L+ ++R
Sbjct: 150 TLEDGTRKPLDTARLRHVVEEACRGLSDVEPAWIIEETRRNLFDGVPEKEVAPTLVMTAR 209

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE+E NY+ V AR LL+ LRRE L+ +      AT  EM   Y EYF  Y++ GV+  
Sbjct: 210 TRIEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGVELE 269

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  L   LK ERD  F YLGLQ LYDRYF+H    R E+PQAFFMRVAMG
Sbjct: 270 LLSPELARFDLQRLGEALKPERDLQFNYLGLQTLYDRYFIHSGDIRFELPQAFFMRVAMG 329

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++E ++E+RA+EFY+LLSSF FM STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+
Sbjct: 330 LAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDDLDGIYSAI 389

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 390 KDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 449

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +   WTLFSP++ 
Sbjct: 450 VCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFSPNDT 509

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G+ FE  Y+ YE +ADRGEIK+++++ AV LWRKML+MLFETGHPW+ FKDPC
Sbjct: 510 PDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGHPWLAFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIR 626
           N+R   QH GVVHSSNLCTEITL+++  E AVCNLGS+NL AH   +   D +KL  TI 
Sbjct: 570 NLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGALDTEKLQRTIA 629

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           T +R+LDNVIDIN +++ +A++SN  HR +GLG+MGFQ AL+ L +PYAS EAV  AD S
Sbjct: 630 TGMRMLDNVIDINYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRLPYASQEAVAFADLS 689

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME +S++AI AS +LA ERG YSSF GSLW +G+ PIDSI LL E R   L M+R+  L 
Sbjct: 690 MEAVSYYAIQASCDLAAERGRYSSFDGSLWSRGILPIDSIALLEEGRGGYLQMDRSQTLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++RV+T+GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTVVN +
Sbjct: 750 WNALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNPY 809

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK   LWD  MI+DLKY+DGS+  IERIP+ LK+++ATAFEID  WLIE+ SRRQK
Sbjct: 810 LVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAGSRRQK 869

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           W+DQAQSLNLYL EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT VEKST    DGKLNA
Sbjct: 870 WLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKTTYYLRSLGATHVEKST--AFDGKLNA 927

Query: 926 V---PVTDPNSSTHSLGI---------PSSC-TSDTECEVCQ 954
           V   P+ D       L           P +C   D  CE CQ
Sbjct: 928 VKTDPIDDAIPGLRPLETVYADTRPAEPKACLIDDPTCEACQ 969


>gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
 gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
          Length = 962

 Score = 1182 bits (3058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/959 (59%), Positives = 720/959 (75%), Gaps = 18/959 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+    SLA   P +++   VIKRNG V S+D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQ----SLASTAPGQLR---VIKRNGKVVSYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPI-APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E+++  RAA+  S   AP     + + M+DG+    +  RLE ++  ACSGL+DV++  +
Sbjct: 128 EQQASKRAAEHSSDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADKI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L  +    +
Sbjct: 188 ITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEALQFL-NVAE 246

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +A+H EM  LY E    YI +G++  LL   + ++DL  L   L   RD  F YLGLQ L
Sbjct: 247 RASHDEMNALYGEALKAYIGKGIELELLSPQLAEYDLDKLGAALDGNRDLQFSYLGLQTL 306

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H N +RIE+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+
Sbjct: 307 YDRYFIHHNDTRIELPQCFFMRVAMGLAVEEDNREARAIEFYNLLSSFDYMSSTPTLFNA 366

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+S
Sbjct: 367 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGRS 426

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+
Sbjct: 427 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNS 486

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+++ 
Sbjct: 487 ANWIPDLFMKRVINEEDWTLFSPNDAPDLHDLYGEAFEKAYLEYEAKTRSGELKLFKRLP 546

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVCN
Sbjct: 547 AINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVCN 606

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL  H   N  D +KL  TI TAVR+LDNVIDIN +++ +A++SN  HR +GLG+M
Sbjct: 607 LGSVNLAQHVDENGLDIEKLQGTINTAVRMLDNVIDINYYSVPQAERSNMKHRPVGLGIM 666

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW QGV 
Sbjct: 667 GFQDALYKQGISYASSDAVTFADNSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGVL 726

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI +L   R E    ++R+  L WD ++   K  GMRNSN MAIAPTATIANI GVS
Sbjct: 727 PIDSIEILVNQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV+ LK+R LWD  M++DLKY+DGS   IERIP 
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVSALKERGLWDNVMVNDLKYYDGSAQPIERIPA 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+GLKT
Sbjct: 846 DLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVP--VTDPNSS-THSLGIPSSCT-SDTECEVCQ 954
           TYYLR+  AT  EKST+   DGKLN V   V +P +    +  +P +C+  D +CE CQ
Sbjct: 906 TYYLRAIGATQTEKSTIN--DGKLNRVSSKVEEPAAEFGQAADVPQACSLDDPDCEACQ 962


>gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella
           koreensis DSM 16069]
 gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella
           koreensis DSM 16069]
          Length = 957

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/933 (60%), Positives = 718/933 (76%), Gaps = 15/933 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VI+RNG VT +D SKI  A+ KAF+AVEG  A+ S RV + ++ LT+Q      +   
Sbjct: 33  IRVIRRNGKVTPYDDSKIEVAMTKAFLAVEGGAAAASSRVHETVRQLTKQITDAFKRRMP 92

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP-KLKI 147
              I+HIED+QDQVE +LM++G  K+ R YVLYREERS  RAA+  +K DA +   ++ +
Sbjct: 93  GGGIIHIEDVQDQVELALMRNGEQKVARSYVLYREERSRERAARDTAKLDALVGDNQVMV 152

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            ++DG+    + +RL  +V EAC  L DV    +L +T +N+YDG++  D   AL+ ++R
Sbjct: 153 TVEDGSKRPLDVERLHTVVVEACKDLSDVEPDQILKDTMRNLYDGVAIKDAYQALVMTAR 212

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEKEPNY  VTAR LL+ +R E L  +    ++AT  EM  +YPE F  Y+  GV+  
Sbjct: 213 TMIEKEPNYTYVTARLLLDSIRSEALREL-GVAKRATQSEMNAIYPEAFKAYLSVGVENE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   ++ FDL  +AN +K ERD  F YLG+Q L+DRYF+H +  RIE+PQ F+MRVAMG
Sbjct: 272 LLSPELLSFDLDKIANAIKPERDMLFTYLGIQTLFDRYFIHKDEVRIELPQVFWMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E ++E RA+EFY++LS+FH+M STPTLFNSGT  PQLSSC+LT VPDDL GI+GA+
Sbjct: 332 LAVNEDDREARAIEFYDVLSTFHYMSSTPTLFNSGTLRPQLSSCYLTNVPDDLDGIYGAI 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWHID+EEFL+LRKNTGDDRRRTHDMN+ANW+PDLF+KRV+ +  WTLFSP+EV
Sbjct: 452 VCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFLKRVSSDGDWTLFSPNEV 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYGKEFE  YE YE  A  G+IK  + I A  LWRKML+MLFETGHPWITFKDPC
Sbjct: 512 PDLHDLYGKEFEERYEYYEEMAKYGKIKTAKTIPANVLWRKMLSMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N+RSPQQHVGVVHSSNLCTEITLN+ + EE AVCNLGS+NL  H  + + D ++L  T+ 
Sbjct: 572 NLRSPQQHVGVVHSSNLCTEITLNTKAGEEIAVCNLGSVNLPKHMKDGKLDTEQLEKTVS 631

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR+LDNVIDIN + ++ A+KSN  HR +GLGLMGFQ AL+L +IPY S  AV+ AD +
Sbjct: 632 TAVRMLDNVIDINFYPVDTARKSNMRHRPVGLGLMGFQDALYLQNIPYTSEAAVDFADNA 691

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME IS++AI AS +LA+ERG+Y SF GSLW QG+ PIDSI  L E R    + ++ +S +
Sbjct: 692 MEAISYYAIQASTDLAEERGSYESFAGSLWSQGILPIDSIEKLIEERGAEFIEVDTSSTM 751

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L++RVKTIGMRNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKSN+SG+FTVVN 
Sbjct: 752 DWDTLRERVKTIGMRNSNVMAIAPTATISNISGVSQSIEPTYQNLYVKSNLSGEFTVVNP 811

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           ++V ELK R LWD  M++DLKY++GS+ +I+RIP ++K++ ATAFE++P WL+E+ASRRQ
Sbjct: 812 YMVKELKARKLWDSVMVNDLKYYEGSLQHIDRIPSEIKELFATAFEVEPKWLVEAASRRQ 871

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLNLY+ EPSGKKLD +YR AW  GLKTTYYLRS  ATS EKST+   DGKLN
Sbjct: 872 KWIDQAQSLNLYMSEPSGKKLDMVYRMAWFRGLKTTYYLRSLGATSTEKSTIS--DGKLN 929

Query: 925 AVPVTDPNSSTHSLG--IPSSCTSD-TECEVCQ 954
           AV     +S   ++G   P +C  D  +CE CQ
Sbjct: 930 AV-----SSGPAAVGSAAPKACAIDEPDCEACQ 957


>gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
 gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
          Length = 967

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/911 (62%), Positives = 692/911 (75%), Gaps = 9/911 (0%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS A   P     V+VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++  L
Sbjct: 31  PSAAEGAP---SAVRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAEL 87

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TEQ    LL+H      +HIE IQDQVE +LM+ GHHK+ R YVLYR    D RA    +
Sbjct: 88  TEQVEAALLRHTGPETALHIEQIQDQVELALMRGGHHKVARAYVLYR----DERAKAREA 143

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            + A     L +   DGTL   +  R+  +V EA +GL+DVS++ VL+E  +N+YDG++ 
Sbjct: 144 AAPAHAEVALSVKGADGTLRPLDWARVSHVVGEAVAGLEDVSAEPVLAEAKRNLYDGITA 203

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +L  A I ++R L+E+EPNY+ V+AR LL+KLR E L+ +   P++A+  EM   Y  Y
Sbjct: 204 DELALAQIMAARVLVEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEYAPY 263

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  Y+   V+  L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H NG R E
Sbjct: 264 FRAYLRRAVELELVDAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGVRFE 323

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVAMGLA++E  +E RA+EFY LLS+FHFM STPTLFNSGT   QLSSCFLTT
Sbjct: 324 LPQAFFMRVAMGLAIREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCFLTT 383

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL  IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTA
Sbjct: 384 VDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTA 443

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV  
Sbjct: 444 VAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEA 503

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           NA WTLFSP+E  DLHDLYG  F   Y  YE  A RGEIKVFRK+ AV LWR+MLTMLFE
Sbjct: 504 NAEWTLFSPNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFE 563

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NLL H     
Sbjct: 564 TGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEG 623

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D ++L  T+RTAVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  L +P+A
Sbjct: 624 LDTERLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFA 683

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733
           S EAV+ AD SME +S++AISAS +LA+ERG Y +F+GSLW +G+ PIDS+ LL + R  
Sbjct: 684 SEEAVKFADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQG 743

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D L ++ ++ L W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNLYVKS
Sbjct: 744 DGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKS 803

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTVVN  LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+ 
Sbjct: 804 NMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 863

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            W++++ S RQKWIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT VEK
Sbjct: 864 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATHVEK 923

Query: 914 STLKGVDGKLN 924
           STL+G DGKLN
Sbjct: 924 STLRGTDGKLN 934


>gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Halothiobacillus neapolitanus c2]
 gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halothiobacillus neapolitanus c2]
          Length = 957

 Score = 1179 bits (3051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/928 (59%), Positives = 700/928 (75%), Gaps = 9/928 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VI+RNG VT+FD SKI  A+ KAF+AVEG GA+ S+RV D++  L++Q  + L +   
Sbjct: 37  LRVIRRNGKVTAFDDSKIKVAMTKAFLAVEGSGAAVSMRVHDLVNALSDQISSALKRRAP 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               VHIEDIQDQVE +LM+ GHHK+ R YVLYRE ++  RAA++  ++   I   L + 
Sbjct: 97  GGGTVHIEDIQDQVELALMREGHHKVARAYVLYREHQAQKRAAEAPDQATPEIV--LNVT 154

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT    +  RL  ++ EACS L DV    VL ET +N++DG+ E ++ TAL+ S+RT
Sbjct: 155 HADGTRSPLDHVRLNALIGEACSNLTDVDPNAVLQETLRNLFDGVPEKEVNTALVMSART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+PNY+ V AR LL+ +R E L    +     T  E+  L+ +YF  YI  G++  L
Sbjct: 215 LIEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCTQSELSGLFADYFQSYINTGIEHEL 274

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L  ++  +D+  L + +   RD  F YLGLQ LYDRYFLH  G R E+PQAFFMRVAMGL
Sbjct: 275 LDPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDRYFLHEGGVRFELPQAFFMRVAMGL 334

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A+ E ++E  A+EFY LLSSF FM STPTLFNSGT  PQLSSC+LTTVPDDL GIF A++
Sbjct: 335 AINEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIFAAIK 394

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDW+ VR L +HI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 395 DNALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 454

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +   WTLFSP +  
Sbjct: 455 CAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVMEEGEWTLFSPADCP 514

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G  FE AY  YE + DRGE+K FR+I A  LWRKML+MLFETGHPWITFKDPCN
Sbjct: 515 DLHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATNLWRKMLSMLFETGHPWITFKDPCN 574

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +R   QH GVVHSSNLCTEITL+++ +E AVCNLGS+NL  H   N  D +KLA TI+TA
Sbjct: 575 LRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGSVNLAQHVTENGLDQEKLARTIKTA 634

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ ALH+  IPY+S +A+E AD SME
Sbjct: 635 MRMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQDALHIQKIPYSSEQAIEFADRSME 694

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            +S++AISAS +LA ERG Y SF+GSLW +G+ PIDSI LLAE R + L MNR + L W+
Sbjct: 695 TVSYYAISASSDLAAERGRYQSFEGSLWSRGILPIDSIDLLAEARGKYLVMNRDTTLDWE 754

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            ++ ++K  GMRNSN MAIAPTATI+NICGV+QSI+P+++NL+VKSN+SG+FTV+N +LV
Sbjct: 755 AVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIEPTFENLFVKSNLSGEFTVINPYLV 814

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  DLWDE M++DLKY DGS+  I+RIPD LK ++ATAFE++P WLIE+ SRRQKWI
Sbjct: 815 RDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKALYATAFEVEPRWLIEAGSRRQKWI 874

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLYL +PSG KLD +Y+ AWL+GLKTTYYLR+ S T VEK+T+  +DGKL  V 
Sbjct: 875 DQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYLRASSKTRVEKTTMTKLDGKLRGVS 934

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
             DP +      +P +C   D  CE CQ
Sbjct: 935 A-DPIAE----ALPKACAIDDPGCEACQ 957


>gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 964

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/930 (60%), Positives = 711/930 (76%), Gaps = 7/930 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG VTSF+ SKIS AI KAF+AVEG  A+ S R+ + +  LTEQ +T   +   
Sbjct: 38  LRVIKRNGTVTSFEDSKISVAITKAFLAVEGGTAAASSRIHETVAKLTEQVITTFKRRMP 97

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH-SKSDAPIAPKLKI 147
           S   +HIEDIQDQVE +LM++G HKI R+YV+YREER+  RAA++  S      A  + +
Sbjct: 98  SGGTIHIEDIQDQVELALMRAGEHKIARDYVIYREERARDRAAKAALSPESQAAASGINV 157

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +M DG+    N +R+  IV EAC+ L DVS   ++ E  +N+YDG++  ++ T+L+ ++R
Sbjct: 158 VMPDGSREPLNIERVRTIVSEACADLVDVSESAIIDEALRNLYDGVTADEVSTSLVITAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IE++PNY+ V AR LL+ LR E L  +    + AT  +M  LY E    +I +GV   
Sbjct: 218 TMIEQDPNYSYVAARLLLDNLRAESLNYL-GVAKSATQSDMAQLYSEALSAFIHQGVTLE 276

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FD+  L   L  ERD  F YLGLQ LYDRYF+H +  RIE+PQ FFMRVAMG
Sbjct: 277 LLSPELLEFDIAALGQALLPERDLQFSYLGLQTLYDRYFIHADEVRIELPQVFFMRVAMG 336

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+++E +   RA+EFY LLSSF +M STPTLFNSGT   QLSSC+LTTVPDDL+GI+GA+
Sbjct: 337 LSIREDDPNTRAIEFYQLLSSFDYMSSTPTLFNSGTLRSQLSSCYLTTVPDDLFGIYGAI 396

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQG++PFLKV NDTAVAVNQGGKRKGA
Sbjct: 397 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGA 456

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP++V
Sbjct: 457 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGDWTLFSPNDV 516

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYG+ FE  Y  YE  A  GEI+V + + A A+WRKML M+FETGHPW+TFKDPC
Sbjct: 517 PDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKAQAVWRKMLGMIFETGHPWVTFKDPC 576

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGS+NL  H  + + +  KL +T+RT
Sbjct: 577 NLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIEDGKLNLKKLRATVRT 636

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A++SN  HR IGLG+MGFQ AL+ + + YAS  AV  AD+SM
Sbjct: 637 AIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMGFQDALYKIDVSYASKGAVSFADQSM 696

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745
           E +S+ AI AS ELA ERGAYSS++GSLW QGVFP+DS+ +L E R  + + +NR     
Sbjct: 697 EAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFPLDSLDILVEQRGANYIEVNRDMTFD 756

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK RV   GMRNSNCMAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +
Sbjct: 757 WPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 816

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD+ M++DLKY DGS+ +I+RIPDDLK  ++TAFEI+P WL++SASRRQK
Sbjct: 817 LVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDDLKAKYSTAFEIEPRWLVDSASRRQK 876

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY++  SGKKLD  YR AW  GLKTTYYLRS +AT  EKST++   GKLNA
Sbjct: 877 WIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKTTYYLRSLAATGTEKSTVES--GKLNA 934

Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           V      S+     +P +C+  D +CE CQ
Sbjct: 935 VASGAAESTPQPAPVPQACSLDDPDCEACQ 964


>gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxidans DMS010]
 gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxydans DMS010]
          Length = 976

 Score = 1178 bits (3047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/890 (61%), Positives = 687/890 (77%), Gaps = 2/890 (0%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G  VI+RNG VT FD  KI+ AI KAF+AVEG  A  S R+ D +K LT Q    LL+  
Sbjct: 18  GYSVIRRNGKVTDFDSGKIAVAITKAFLAVEGDSAQNSRRIHDTVKKLTGQITDNLLRRL 77

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                VHIEDIQDQVE +LM+ G +K+ R YV+YRE++S+ RA +            L +
Sbjct: 78  DDGGTVHIEDIQDQVELALMREGEYKVARSYVVYREKQSEKRAEEEKKHPQPANETTLHV 137

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + DGT    +  RL  ++ EAC GL +V  + +L +T +N++DG+ ESD+E AL+  +R
Sbjct: 138 TLADGTRQPLDIDRLHNLITEACEGLAEVDREAILRDTQRNLFDGVKESDVEKALVMGAR 197

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IEK+P Y+ + AR L++ +RRE L+ V+K P++A  +EM  +YP+YF  YI   ++  
Sbjct: 198 TFIEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDIYPDYFKSYIHTAIEKE 257

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           L+   +  FDL  L   LK E DF F YLGLQ LYDRYF+H +G+R E+PQAF+MRVAMG
Sbjct: 258 LVDSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDGTRFELPQAFYMRVAMG 317

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E  +E+RA+EFYNLLSSF FM STPTLFNSGT  PQLSSC+LTTVPDDL GI+ A+
Sbjct: 318 LAINELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLSGIYNAM 377

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWT VRGLGAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 378 RDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 437

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWHID+EEFLD+RKNTGDDRRRTHDMNTANWIPD+FMKRV +   WTLFSP+EV
Sbjct: 438 VCAYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMKRVAEEGQWTLFSPEEV 497

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G  FE AY  YE +A RGEI+ F+++ A  LWRKML MLFETGHPW+TFKDPC
Sbjct: 498 DDLHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLGMLFETGHPWVTFKDPC 557

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIR 626
           N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+N++ H   N + D  KL  T+R
Sbjct: 558 NLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHIDENGKLDTQKLQKTVR 617

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ AL+ L +PY+S E V+ ADES
Sbjct: 618 TAMRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKLRLPYSSEETVKFADES 677

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME +S++AI AS +LA ERG Y S++GSLW +G+ PIDSI LL E R E L  + +  + 
Sbjct: 678 MEAVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQEARGEYLQQDDSQTMD 737

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ ++K  GMRNSN MAIAPTATI+NICGVSQSI+P+YQN++VKSN+SG+FTV+N +
Sbjct: 738 WDALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNIFVKSNLSGEFTVINPY 797

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +V +LK RDLWDE MI+DLKY DGS+ +I+RIPD+LK ++ TAFE+D  WLIE+ASRRQK
Sbjct: 798 MVEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAFEMDARWLIEAASRRQK 857

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           WIDQAQSLNLY+ EPSGKK+D +Y+ AW+ GLKTTYYLRS  AT  EK++
Sbjct: 858 WIDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAEKTS 907


>gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
 gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
          Length = 967

 Score = 1177 bits (3046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/930 (60%), Positives = 700/930 (75%), Gaps = 10/930 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+ S R+ + +  LTE       +   
Sbjct: 44  LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETVAKLTEMVTATFKRRMP 103

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-QSHSKSDAPIAPKLKI 147
           S   +HIED+QDQVE SLM++G HKI R+YV+YRE+++  RAA QS S      A ++ +
Sbjct: 104 SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQAVKRAARQSLSAETQQAADRINV 163

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +  DG+    + +RL +IV EAC+GL+DVS   +L E  +N+YDG+S  +L T+L+ ++R
Sbjct: 164 VQLDGSKAPLDLERLHIIVSEACAGLEDVSESRILDEALRNLYDGVSMQELSTSLVITAR 223

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIE+EPNY   +AR L + LR E LT +    + AT  +M   YP+    YI+ GV+  
Sbjct: 224 TLIEQEPNYTYASARLLCDNLRTEALTFL-GVAESATQGDMDRYYPQALSAYIKRGVELE 282

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL  ++ D+DL  L   +  ERD  F YLGLQ LYDRYF+H +  RIE+PQ FFMRVAMG
Sbjct: 283 LLDPTLADYDLEQLGAAILPERDLQFTYLGLQTLYDRYFIHSDEVRIELPQIFFMRVAMG 342

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++E  +E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+
Sbjct: 343 LAVEEEHREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 402

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 403 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 462

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP++V
Sbjct: 463 VCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDV 522

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYGK FE  Y  YE  A  GEIK  + + A  LWRKML MLFETGHPW+TFKDPC
Sbjct: 523 PDLHDLYGKAFEERYNTYEAMAANGEIKNHKTVKAQNLWRKMLGMLFETGHPWMTFKDPC 582

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H   N  + +KL  T+RT
Sbjct: 583 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHIDENGLNLEKLEQTVRT 642

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN ++++ A+ SN  HR +GLGLMGFQ AL+  HI Y S  AVE AD SM
Sbjct: 643 AVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSDAAVEFADRSM 702

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745
           E IS++AI AS  LA ERGAYSS++GSLW QG+ PIDS+  L + R  D + ++ T+ L 
Sbjct: 703 EAISYYAIDASSSLAAERGAYSSYEGSLWSQGILPIDSLSKLVDERGSDYIKVDSTTTLD 762

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+  VK  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +
Sbjct: 763 WESLRTSVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 822

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LVN+LK R LWD  M++DLKY+DGS+ +IERIP DL+ I++ AFE++P W++E ASRRQK
Sbjct: 823 LVNDLKARGLWDSVMVNDLKYYDGSVQSIERIPADLRAIYSNAFEVEPKWIVECASRRQK 882

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY++  SGKKLD  YR AW  GLKTTYYLRS +AT  EKST+    G+LNA
Sbjct: 883 WIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTI--ATGQLNA 940

Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           V     ++      +P +C+  D +CE CQ
Sbjct: 941 V---SSSAEPQPAPVPQACSLDDPDCEACQ 967


>gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
 gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
          Length = 922

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/928 (60%), Positives = 700/928 (75%), Gaps = 10/928 (1%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG V  FD SKIS AI KAF+AVEG  A+ S R+ + +  LT Q +    +   S 
Sbjct: 1   MIKRNGQVVPFDNSKISVAITKAFLAVEGGTAAASSRIHETVAKLTTQVMGTFERRMPSG 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             +HIEDIQDQVE +LM++G HKI R+YV+YREE++  RA +    ++A   A  + ++ 
Sbjct: 61  GTIHIEDIQDQVELALMRAGEHKIARDYVIYREEQARKRAQKRALSAEAERAAGAISVLQ 120

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG+    + +RL+ +V EAC+ L DVS+  +L E  +N+YDG++  ++ T+L+ ++RTL
Sbjct: 121 PDGSRAPLDIERLQTVVSEACADLADVSASKILEEALRNLYDGVTLDEVTTSLVITARTL 180

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE+EPNY    AR L + LR E L  +    Q+AT  EM   YP+    YI +G++  LL
Sbjct: 181 IEQEPNYTYAAARLLCDDLRSEALEFL-GVTQRATQQEMALYYPQALQAYIAKGIQLELL 239

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              + DFD+  L   ++ ERD  F YLGLQ LYDRYF+H N +R E+PQ FFMR+AMGLA
Sbjct: 240 SPELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLA 299

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           ++E +K  RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+GA+++
Sbjct: 300 VREDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRD 359

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC
Sbjct: 360 NALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 419

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ANWIPDLFMKRV +   WTLFSP++  D
Sbjct: 420 AYLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPD 479

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHD YG +FE  YE YE Q   GE+K+F+++ A  LWRKML MLFETGHPWITFKDPCN+
Sbjct: 480 LHDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNL 539

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H   N  + +KL  T+ TAV
Sbjct: 540 RSPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAV 599

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +++ +A++SN  HR +GLGLMGFQ AL+  HI Y+SPEAVE AD SME 
Sbjct: 600 RMLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEA 659

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWD 747
           IS++AI AS  LA+ERG YSSF+GSLW QG+ PIDS+  LAE R +  L ++RT  L WD
Sbjct: 660 ISYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWD 719

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 720 TLRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK R+LWD+ M++DLKY+DGS   I+RIP DLK I++TAFE++P W++E+ASRRQKWI
Sbjct: 780 NDLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWI 839

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY++  SGKKLD  YR AWL GLKTTYYLRS +AT  EKST+    G LNAV 
Sbjct: 840 DQAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVD--KGTLNAVA 897

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
                          +C+  D +CE CQ
Sbjct: 898 AAAAPQPAPVP---KACSLDDPDCEACQ 922


>gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1]
          Length = 959

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/948 (58%), Positives = 709/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+ P LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNPDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 955

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/943 (58%), Positives = 716/943 (75%), Gaps = 18/943 (1%)

Query: 21  PFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
           P P    G ++VIKRNG V S+D  KI+ AI KAF+AVEG  A+ S R+ + +  L    
Sbjct: 22  PKPAIAPGQMRVIKRNGSVVSYDAEKIAIAITKAFLAVEGGAAAASTRIHNEVNQLANSV 81

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
            T   +   S   +HIE+IQDQVE  LM+SG  K+ R YVLYREER  +R  +   K   
Sbjct: 82  TTTFTRRMPSGGTLHIEEIQDQVELELMRSGEQKVARTYVLYREERKQLRQKEEPQKE-- 139

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
                +++ +++G   + + K LE++V EAC GL+  +++ ++ E  KN+YDG++E D  
Sbjct: 140 -EKEGIRVTLENGDEDTQDIKHLEIMVTEACEGLEGTNAQQIIDEANKNLYDGVTEEDAR 198

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           T+L+ +SRTL+E+EPNY  VTAR LL+ +R E LT +  + Q AT  EM+ LYP+    +
Sbjct: 199 TSLVMTSRTLVEQEPNYTYVTARILLDNIRTEALTYLELQKQ-ATQQEMKVLYPQALRSF 257

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           + +GV+  +L+  +++ D+  L   +   RD  F YLGLQ LYDRYF+H    R E+PQ 
Sbjct: 258 LAKGVENEILNPELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYDRYFIHDTEIRYELPQV 317

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FFMRV+MGLAL+E ++E++A+EFYNLLSSF +M STPTLFNSGT+H QLSSC+LTTVPDD
Sbjct: 318 FFMRVSMGLALREEKREEKAIEFYNLLSSFDYMSSTPTLFNSGTKHSQLSSCYLTTVPDD 377

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L+GI+GA+Q+NAML+K++GGLGNDWTPVRGLG+ I GTNGKSQGV+PFLKV NDTAVAVN
Sbjct: 378 LHGIYGAIQDNAMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQGVVPFLKVVNDTAVAVN 437

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLF+KRV+++  W
Sbjct: 438 QGGKRKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKW 497

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF+P +  DLHDLYG EFE  YE YE Q   GEI+ F+++ A  LW+KML+M+FETGHP
Sbjct: 498 TLFTPSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAKDLWKKMLSMVFETGHP 557

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGS+NL  H  + + D +
Sbjct: 558 WITFKDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLTHHIKDGKMDEE 617

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TA+R+LDNVIDIN + ++ A+ SN  HR IGLG+MGF  AL++L  PYAS EA
Sbjct: 618 KLEKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGFHDALYMLETPYASQEA 677

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LA 737
           V+ AD+SME +S++AI AS +LA+ERGAY S++GSLW QG+ PIDSI LL E R E  L 
Sbjct: 678 VDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPIDSIKLLKESRGEDYLE 737

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           M+ +S + WD L++ V+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG
Sbjct: 738 MDESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG 797

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTV N  +V  LK+  LWD  MI+DLKY+DGS+  I RIP+++K+++ATAF+I+P WLI
Sbjct: 798 EFTVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLI 857

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           ++ASRRQKWIDQ+QSLNLY+DEP+GKKLD +YR AWL GLKTTYYLRSRSAT+ EKST+ 
Sbjct: 858 DAASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTYYLRSRSATTAEKSTIS 917

Query: 918 GVDGKLNAV-----PVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
              G+LNAV     P   P ++T +   PS+C+  D +C+ CQ
Sbjct: 918 --TGELNAVSATAQPEVQPQNNTTA---PSACSILDPDCDACQ 955


>gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida KT2440]
 gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
          Length = 959

 Score = 1169 bits (3024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/948 (58%), Positives = 708/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida F1]
 gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida F1]
          Length = 959

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/948 (58%), Positives = 708/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
 gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
          Length = 959

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/948 (58%), Positives = 707/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSQQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           ++S +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANSDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAESATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+E+GV+  LL  ++  +DL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIN 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 PYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + +N    L W  +++RVK  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVNLEESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
 gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
          Length = 963

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE R+  R   
Sbjct: 76  RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 GAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLA++E ++E R +EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARTIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  LWRKML+M
Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS   L E 
Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPV-------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
            EKST+    GKLNAV           P +      +P +C+ D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas
           entomophila L48]
          Length = 958

 Score = 1166 bits (3016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/932 (59%), Positives = 703/932 (75%), Gaps = 10/932 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 31  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 90

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA ++++ +     P ++I 
Sbjct: 91  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATRANTDAVVEPHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+L   +  RL  I+ EAC GL +V  +++  ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSLAPLDMARLNTIISEACEGLAEVDGELIQRETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+E+GV+  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLYAKALPAYVEKGVEFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L  ++  +DL  +   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LDPALKGYDLERMGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQVFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 ALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 510 DLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCN 569

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D  KL  T+ TA
Sbjct: 570 LRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTA 629

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AVE AD+SME
Sbjct: 630 VRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSME 689

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R +  + ++ T  L W
Sbjct: 690 AVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLTESLDW 749

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             +++RVK  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +L
Sbjct: 750 APVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYL 808

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE++  W++++ASRRQKW
Sbjct: 809 VRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKW 868

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV
Sbjct: 869 IDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNAV 926

Query: 927 PVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
                ++   + G   +P +C  D  +CE CQ
Sbjct: 927 SSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 958


>gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
 gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
          Length = 963

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/932 (59%), Positives = 705/932 (75%), Gaps = 9/932 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ A+ KAF+AVEG  A+ S RV + +K  T+Q      +   
Sbjct: 35  LRVIKRNGTVMPYAEDKIAIAVTKAFLAVEGGTAAASSRVHETVKLFTQQISDTFNRRMP 94

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PKLK 146
           S   VHIEDIQDQVE +LM++G HK+ R+YVLYR ER+ VRA+ + + S   ++  PKL 
Sbjct: 95  SGGTVHIEDIQDQVELTLMRNGEHKVARDYVLYRAERARVRASATPAVSAEALSKYPKLN 154

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + +++G     +  R+  IV EAC GL DVS   +L E  +N+YDG++ SD+ T+L+ ++
Sbjct: 155 VTLENGDTAPLDMARIHTIVTEACEGLSDVSVDAILDEAMRNLYDGVALSDINTSLVITA 214

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTL+EKEPNY+  TAR L +KLR E L  +    ++ATHHEM   Y +    YIE+G++ 
Sbjct: 215 RTLVEKEPNYSYATARLLQDKLRAEALGFL-GIAEQATHHEMAHYYAQALPAYIEKGIEL 273

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL  S+ +FD+  L   L + RD  F YLGLQ LYDRYF+H N  RIE+PQ FFMRVAM
Sbjct: 274 ELLAPSLRNFDIPALGKALDHTRDSQFTYLGLQTLYDRYFIHSNDVRIELPQIFFMRVAM 333

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLA++E +  +RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA
Sbjct: 334 GLAVEEDKPTERAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGA 393

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG
Sbjct: 394 MQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 453

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV     WTLF+P E
Sbjct: 454 AMCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDKKEWTLFTPSE 513

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDL G  FE  YE YER ADRGEIK F++I A +LWRKML MLFETGHPWITFKD 
Sbjct: 514 APDLHDLCGTAFETRYEEYERMADRGEIKHFKRIPAESLWRKMLGMLFETGHPWITFKDS 573

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTI 625
           CN+RSPQQHVGV+HSSNLCTEITLN+S+ +E AVCNLGS+NL  H  N + +  KL +T+
Sbjct: 574 CNLRSPQQHVGVIHSSNLCTEITLNTSAGDEIAVCNLGSVNLAQHIENGELNTTKLEATV 633

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            TAVR+LDNVIDIN + +E A+ SN  HR IGLGLMGFQ AL+     Y+S +AVE AD 
Sbjct: 634 NTAVRMLDNVIDINYYAVEAARTSNMRHRPIGLGLMGFQDALYKQGFAYSSDQAVEFADR 693

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743
           SME IS+ AI+AS  LA ERG Y +F+GSLW +G  PIDSI  L + R E  + M+R+  
Sbjct: 694 SMEAISYFAINASSNLAAERGQYPTFEGSLWSKGELPIDSIETLVKQRGEKYIEMDRSQT 753

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W  L+ +V+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN
Sbjct: 754 LDWSSLRSKVQKQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVN 813

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L+++LK+RDLWD  M++DLKY++GS+  +ERIP DLK ++ATAFE++P W++ +ASRR
Sbjct: 814 PYLIHDLKKRDLWDAVMVNDLKYYEGSVQKVERIPADLKALYATAFEVEPRWIVSAASRR 873

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKW+DQAQSLNLY+   +GKKLD  YR AW  GLKTTYYLR+ SAT+ EKST+ G  G L
Sbjct: 874 QKWLDQAQSLNLYIAGANGKKLDVTYRMAWYSGLKTTYYLRALSATTTEKSTVSG--GTL 931

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           NAV     +++  +  +P +C+ D  +CE CQ
Sbjct: 932 NAVSSNAESAAPVAAAVPKACSIDEPDCEACQ 963


>gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. MP688]
 gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. MP688]
          Length = 937

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/938 (60%), Positives = 706/938 (75%), Gaps = 24/938 (2%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  ++ LT+  V  L++
Sbjct: 15  LPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISTHMRTEVQALTDTVVAALVR 74

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   +HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ          P L
Sbjct: 75  RKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREKRAAERAAQQAPA------PTL 128

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++ D G  +  + + L  +V EAC  L D V   +++ +  +++YDG+   ++  ALI 
Sbjct: 129 HVLQD-GKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAMRDLYDGMPFDEVRRALIL 187

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   Y EYF +YI+ G+
Sbjct: 188 SARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKAGI 241

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI   RIE+PQ FFMRV
Sbjct: 242 AAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRV 301

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+
Sbjct: 302 AMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIY 361

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGGKR
Sbjct: 362 QAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKR 421

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTLFSP
Sbjct: 422 KGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSP 481

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWITFK
Sbjct: 482 SDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFK 541

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDK 620
           DPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH          D  K
Sbjct: 542 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQTK 601

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS  AV
Sbjct: 602 LAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASAAAV 661

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739
           E AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R  ++ ++
Sbjct: 662 EFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVEVD 721

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           R+  L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+F
Sbjct: 722 RSRTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEF 781

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++ATAFE+DP+WL+E+
Sbjct: 782 TVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEA 841

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS  ATS EKST +G 
Sbjct: 842 AARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQG- 900

Query: 920 DGKLNAVPVTDP--NSSTHSLGIPSSC-TSDTECEVCQ 954
            G+LNAV    P   ++T++   P  C   D +CE CQ
Sbjct: 901 -GELNAVSSALPAVAAATNAEPEPKQCLIDDPDCEACQ 937


>gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b]
          Length = 942

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K     +  L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K + AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           + D          P +C+ +D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
 gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
          Length = 958

 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/930 (59%), Positives = 697/930 (74%), Gaps = 11/930 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+ S R+ + +  LT+Q      +   
Sbjct: 36  LRVIKRNGTVVPFEESKISVAITKAFLAVEGGTAAASSRIHETVAKLTDQVAATFQRRMP 95

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ-SHSKSDAPIAPKLKI 147
           S   +HIED+QDQVE SLM++G HKI R+YV+YREE+S  RAA+ S S+     A  + +
Sbjct: 96  SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREEQSRKRAAKASLSQETQDAANGINV 155

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +  DG+ ++ +  RL  +V EAC  L+DV    +L E  KN+YDG++  +L T+L+ ++R
Sbjct: 156 IQPDGSRVALDLDRLHTVVSEACFELEDVVESAILDEALKNLYDGVTAEELATSLVITAR 215

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IE++PNY+ V AR L + LR E L+ +      AT  +M  LY +    YI  G++  
Sbjct: 216 TMIEQDPNYSYVAARLLCDNLRAEALSFL-GVATNATQADMGQLYAKALPAYIARGIELE 274

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL  ++  +DL  L   L  ERD  F YLGLQ LYDRYF+H + +R E+PQ FFMRVAMG
Sbjct: 275 LLSPNLAGYDLQRLGEALLPERDLQFTYLGLQTLYDRYFIHSDETRFELPQVFFMRVAMG 334

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA +E  +  RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+
Sbjct: 335 LAAEEANRNDRAIEFYELLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 394

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG++PFLKV NDTAVAVNQGGKRKGA
Sbjct: 395 QDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGIVPFLKVVNDTAVAVNQGGKRKGA 454

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+DVEEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP +V
Sbjct: 455 VCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFNGEDWTLFSPSDV 514

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYG  FE  Y +YE  A  GEIK+F+ + A  LWRKML MLFETGHPW+TFKDPC
Sbjct: 515 PDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAENLWRKMLGMLFETGHPWMTFKDPC 574

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL  H   N  + +KL +T+RT
Sbjct: 575 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPQHIDENGLNLEKLRNTVRT 634

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLGLMGFQ AL+  H+ Y S +AV  AD SM
Sbjct: 635 AVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQDALYKQHLAYGSEQAVSFADHSM 694

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745
           E IS++AI AS ELA ERGAYSS++GSLW QGVFPIDS+  L + R  D + +++T  + 
Sbjct: 695 EAISYYAIEASSELAAERGAYSSYEGSLWSQGVFPIDSLQRLIDERGADYIQVDQTESMD 754

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+ +V+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +
Sbjct: 755 WQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 814

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK+R LWD  M++DLKY+DGS+  I+RIP D+K I++TAFE++P WL+++ASRRQK
Sbjct: 815 LVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIKGIYSTAFEVEPRWLVDAASRRQK 874

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY++  +GKKLD  YR AW  GLKTTYYLRS +AT  EKST+    G LNA
Sbjct: 875 WIDQAQSLNLYINNANGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTID--TGTLNA 932

Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           V     N +     +P +C+  D +CE CQ
Sbjct: 933 V----SNEAAGPAPVPQACSLDDPDCEACQ 958


>gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
 gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
          Length = 969

 Score = 1162 bits (3006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/930 (60%), Positives = 699/930 (75%), Gaps = 10/930 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+ S R+ + +  LTE       +   
Sbjct: 46  LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETVAKLTEMVTATFKRRMP 105

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-QSHSKSDAPIAPKLKI 147
           S   +HIED+QDQVE SLM++G HKI R+YV+YRE+++  RAA QS S      A ++ +
Sbjct: 106 SGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQASKRAARQSLSAETQEAADRINV 165

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +  DG+    + +RL +IV EAC+GL DVS   +L E  +N+YDG+S  +L T+L+ ++R
Sbjct: 166 VQLDGSKAPLDLERLHIIVSEACAGLDDVSETRILDEALRNLYDGVSMQELSTSLVITAR 225

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIE+EPNY   +AR L + LR E L+ +      AT  +M  LY +    YI  GV+  
Sbjct: 226 TLIEQEPNYTYASARLLCDNLRTEALSFL-GVADSATQGDMDRLYAKALPAYIARGVELE 284

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL  ++ ++DL  +   +  ERD  F YLGLQ LYDRYF+H +  R E+PQ FFMRVAMG
Sbjct: 285 LLDPTLAEYDLERMGKAILPERDLQFTYLGLQTLYDRYFIHSDEVRFELPQIFFMRVAMG 344

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++ET++E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+
Sbjct: 345 LAVEETDREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAI 404

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 405 QDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 464

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP++V
Sbjct: 465 VCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFSPNDV 524

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYGK FE  Y  YE  A  GE+K  + + A  LWRKML MLFETGHPW+TFKDPC
Sbjct: 525 PDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLGMLFETGHPWMTFKDPC 584

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H   N  + +KLA T+RT
Sbjct: 585 NLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHVDENGLNLEKLAETVRT 644

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN ++++ A+ SN  HR +GLGLMGFQ AL+  HI Y S +AV  AD SM
Sbjct: 645 AVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSEDAVTFADRSM 704

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLP 745
           E IS++AI AS +LA+ERGAY S++GSLW QG+ PIDS+G L E R  D + ++ +  + 
Sbjct: 705 EAISYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVEERGSDYIKVDDSMTMD 764

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L++ VK  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +
Sbjct: 765 WTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPY 824

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LVN+LK R LWD  M++DLKY+DGS+  IERIP DL+ I++ AFE++P W++E ASRRQK
Sbjct: 825 LVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAFEVEPRWIVECASRRQK 884

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY++  SGKKLD  YR AW  GLKTTYYLRS +AT  EKST+    G+LNA
Sbjct: 885 WIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAATGTEKSTID--TGQLNA 942

Query: 926 VPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           V      S+     +P +C+  D +CE CQ
Sbjct: 943 V---SSESAPAPAPVPMACSLDDPDCEACQ 969


>gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
 gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
          Length = 949

 Score = 1162 bits (3005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/934 (59%), Positives = 698/934 (74%), Gaps = 21/934 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + I+RNG V  F+P KIS A+ KAF+A+ G   + S  ++D +  LTE  V+ L++    
Sbjct: 28  KTIRRNGAVVPFEPVKISIAMTKAFLAIMGHQGATSASIRDKVAQLTEMVVSALMRRKPE 87

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              +HIEDIQDQVE SLM++G H + R YVLYREERS  RAA+  + +   I     ++ 
Sbjct: 88  GGAIHIEDIQDQVELSLMRAGEHDVARAYVLYREERSRERAARGEALTQITI----NVVR 143

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            +G  +  +  +L   +E AC GL +     +L+ET KN+YDG+SE ++  + I ++R +
Sbjct: 144 KNGAKLPLDIAKLRATIESACVGLAETDVDAILTETLKNIYDGVSEEEVNKSAILAARAM 203

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE++P Y  VTAR LL  +R E+L       +  +  EM   Y  YF + I++G+ A LL
Sbjct: 204 IEQDPAYDYVTARLLLNNIRLEILG------EAVSQEEMGECYVSYFPQAIKKGIAAELL 257

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E + ++DL  L   L   RD  F YLGLQ LYDRYFLH+NG+RIEMPQAF+MRVAMGLA
Sbjct: 258 DERLGEYDLKKLGAALDASRDLQFGYLGLQTLYDRYFLHVNGTRIEMPQAFYMRVAMGLA 317

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L E E+E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTT+ DDL GI+  ++E
Sbjct: 318 LNEVEREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKE 377

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC
Sbjct: 378 NALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 437

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV   A WTL SP E  D
Sbjct: 438 AYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLSPSECPD 497

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDL G  FE  Y+ YE  A RGEIKV ++I A++LWRKMLTMLFETGHPWITFKDPCNI
Sbjct: 498 LHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITFKDPCNI 557

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTA 628
           RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL  H  A+   D  KL  TIR A
Sbjct: 558 RSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQADGTLDGAKLQRTIRIA 617

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+  IPYAS EAVE ADESME
Sbjct: 618 MRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVEFADESME 677

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            +++HA  AS ELAQERG Y S+KGSLWD+GV P DSI LLA  R   L ++RT RL W+
Sbjct: 678 LVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGGYLDVDRTERLDWN 737

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+YQNL+VKSN+SG+FTV N  LV
Sbjct: 738 KLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEHLV 797

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK+  LWDE M+SDLKY DGS+G I+RIP +LK I+ATAFE+DP WL+++ASRRQKWI
Sbjct: 798 RDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAASRRQKWI 857

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G  G+LNAV 
Sbjct: 858 DQAQSLNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVS 915

Query: 928 VTDP--NSSTHSLGIPSS----CTSDT-ECEVCQ 954
            T P  +++      P++    C+ D  +CE CQ
Sbjct: 916 ATTPAVSAAPEVDNTPATDAKFCSIDNPDCEACQ 949


>gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida GB-1]
 gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida GB-1]
          Length = 959

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/948 (58%), Positives = 706/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 AYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Corby]
 gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila str. Corby]
          Length = 917

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 2   LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K     +  L I 
Sbjct: 62  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 120

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 121 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 180

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K + AT  EM  +YP YF  YIE+G+   +
Sbjct: 181 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 239

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 240 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 299

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 300 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 359

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 360 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 419

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 420 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 479

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 480 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 539

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 540 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 599

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 600 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 659

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L  +R+ +L W+
Sbjct: 660 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 719

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 720 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 780 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 839

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 840 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 897

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           + D          P +C+ +D +CE CQ
Sbjct: 898 LIDTE--------PKACSITDPDCEACQ 917


>gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus
           degradans 2-40]
 gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Saccharophagus degradans 2-40]
          Length = 969

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/938 (59%), Positives = 713/938 (76%), Gaps = 15/938 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KIS A+ KAF+AVEG  A+ S R+ + ++ LT Q      +   
Sbjct: 35  LRVIKRNGTVVPYTDDKISVAMTKAFLAVEGGTAAASRRIHETVEGLTAQISATFKRRMP 94

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147
           S   +HIE+IQDQVE +LM++G HK+ R+YV+YR +R++ R  A +    +    P++ +
Sbjct: 95  SGGTIHIEEIQDQVELTLMRAGEHKVARDYVIYRAKRAEQRTPAVNVEDVNFSDFPEINV 154

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +  +G     +  R++ +V EAC+GL+DV +  +L E  +++YDG+S +DL TAL+ S+R
Sbjct: 155 VDHNGDRHPLDIDRIKTVVAEACAGLKDVDADAILKEAMRSLYDGVSLTDLNTALVISAR 214

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+EKEPNY   T+R L++KLR E L+ +    ++AT  EM+ LY +    YIE+G++  
Sbjct: 215 TLVEKEPNYTYATSRLLMDKLRAEALSFL-GIAEEATQAEMETLYAKTLPAYIEKGIELD 273

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           L+   +  +DL  L N L  ERD  F YLGLQ LYDRYFLH N  RIE+PQ FFMRVAMG
Sbjct: 274 LISPDLASYDLNMLGNALIAERDLQFTYLGLQTLYDRYFLHSNDVRIELPQIFFMRVAMG 333

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA  E  K +RAVEFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+
Sbjct: 334 LAANEENKNERAVEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAM 393

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 394 QDNAMLSKWAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 453

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +   WTLFSP++V
Sbjct: 454 VCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFEEKEWTLFSPNDV 513

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL+G+ FE  YE YERQA  G+I+V +K+ A+ LWRKML MLFETGHPWITFKD C
Sbjct: 514 PDLHDLFGRAFEDRYEEYERQAAAGKIRVHKKVRALDLWRKMLGMLFETGHPWITFKDAC 573

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N+RSPQQH GVVHSSNLCTEITLN+ ++EE AVCNLGSINL  H  + + D +KLA T++
Sbjct: 574 NLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCNLGSINLAQHIVDGKLDEEKLAQTVK 633

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR+LDNVIDIN + +E A+ SN  HR +GLGLMGFQ AL+ ++I Y+S +AV  AD S
Sbjct: 634 TAVRMLDNVIDINYYAVESARTSNMRHRPVGLGLMGFQDALYKMNISYSSDDAVTFADRS 693

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME IS+HAI AS ELA+ERG+YS+F GSLW +G+ P+DS+ LL E R E  + ++++S  
Sbjct: 694 MEAISYHAIKASSELAKERGSYSTFDGSLWSKGILPLDSLDLLIENRGEKFIKVDKSSTH 753

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L++ VKT GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN 
Sbjct: 754 DWDTLRETVKTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 813

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV++LK+R LWD  M++DLKY++GS+  I+RIP+DLK +++TAFE++P W++E+ASRRQ
Sbjct: 814 YLVHDLKERGLWDSVMVNDLKYYEGSLQKIDRIPEDLKALYSTAFEVEPRWIVEAASRRQ 873

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLNLY+   +GKKLD  YR AW  GLKTTYYLR+ SAT+ EKST+    G LN
Sbjct: 874 KWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLKTTYYLRALSATTTEKSTV--TSGTLN 931

Query: 925 AV-------PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           AV             +      +P +C+  D +CE CQ
Sbjct: 932 AVSSGGGASQSAAAAAEPAPAAVPLACSLDDPDCEACQ 969


>gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium
           violaceum ATCC 12472]
 gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 972

 Score = 1161 bits (3003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/935 (59%), Positives = 698/935 (74%), Gaps = 24/935 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + I+RNG V  F+P KIS A+ KAF+AV G   + S  ++D +  LTEQ V  L++    
Sbjct: 52  KTIRRNGAVVPFEPVKISIAMTKAFLAVMGNQGATSASIRDKVAQLTEQVVNALMRRKPE 111

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              +HIEDIQDQVE SLM+ G H + R YVLYRE+RS  RAA    + +A  + ++ ++ 
Sbjct: 112 GGAIHIEDIQDQVELSLMRFGEHDVARAYVLYREQRSQERAA----RGEALTSVQINVLR 167

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG  +  +  RL   +E A   L  +    +L+ET KN+YDG+ E ++  + I ++R++
Sbjct: 168 KDGRKLPLDVPRLRASIEAASKNLAGIDVDAILAETLKNIYDGVPEEEVGKSAILAARSM 227

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE++P Y  VTAR L+  +R E+L       +  +  EM   Y  YF  YI++G+ A LL
Sbjct: 228 IEQDPAYDYVTARLLMGNIRLEILG------EAVSQDEMGKQYAPYFADYIKKGIAAELL 281

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E + ++DL  L   L  ERD  F YLGLQ LYDRYFLH++G+RIEMPQAF+MRVAMGLA
Sbjct: 282 DEKLAEYDLKKLGAALDAERDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFYMRVAMGLA 341

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L E  +E RA+EFY +LSSF FM STPTLFNSGTR  QLSSC+LTT+ DDL GI+  ++E
Sbjct: 342 LNEVNREDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTIADDLDGIYEGIKE 401

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC
Sbjct: 402 NALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 461

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   W+LFSP E  D
Sbjct: 462 AYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWSLFSPSETPD 521

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDLYG+ FE AY  YE +  RGE+KV+++I A++LWRKMLTMLFETGHPW+TFKDPCNI
Sbjct: 522 LHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRKMLTMLFETGHPWVTFKDPCNI 581

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTA 628
           RSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH   +   D DKL  TIRTA
Sbjct: 582 RSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLSAHLKEDGSLDADKLQRTIRTA 641

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+  +PY S  AVE ADESME
Sbjct: 642 LRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHIKRVPYGSNAAVEFADESME 701

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            +++ A  AS ELA+ERG Y S+ GSLWD+GV P DSI LLA  R   L ++RT R+ W+
Sbjct: 702 MVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSINLLAAERGGYLEVDRTERMDWN 761

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+YQNL+VKSN+SG+FTV N +LV
Sbjct: 762 KLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFTVTNEYLV 821

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK   LWDE M++DLKY DGS+G I+R+P +LK I+ATAFE+DP WL+E+ASRRQKWI
Sbjct: 822 RDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYATAFEVDPKWLVEAASRRQKWI 881

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY+   SGKKLD +Y+ AWL GLKTTYYLR+ +ATS EKST +G  G+LNAV 
Sbjct: 882 DQAQSLNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTLAATSAEKSTGRG--GELNAVS 939

Query: 928 V---TDPNSSTHSLGIPSS----CTSDT-ECEVCQ 954
               T P ++  +   P++    C+ D  +CE CQ
Sbjct: 940 SQAQTAPAAAVDN--TPATDAKFCSIDNPDCESCQ 972


>gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 945

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/945 (60%), Positives = 700/945 (74%), Gaps = 42/945 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V  FD SKI  A+ KAF+AV+G   + S RV+D++  LT Q V  L +    
Sbjct: 23  RVIRRNGSVVPFDASKIQVAMTKAFLAVDGGTGAASARVRDLVGRLTAQVVETLERRQPG 82

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              +HIEDIQDQVE +LM++G H++ R YVLYREER+  RA Q    S A  AP L++  
Sbjct: 83  GGTLHIEDIQDQVELALMRAGEHEVARAYVLYREERARERA-QKREASPAS-APILRVRH 140

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            DG+    + +RL  ++ EACSGL + VS   +L  T +N+YDG+SE +L  A I + R 
Sbjct: 141 ADGSEQPLDLERLRQVIGEACSGLGEAVSVDAILQATQRNLYDGISEEELFQAPILACRV 200

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE++P YA  TAR LL+++RREVL       + ATH EM   YPEYF  Y+  G++  L
Sbjct: 201 LIEQDPAYAHATARLLLDRVRREVLG------EPATHAEMAQRYPEYFKDYLRTGIQHEL 254

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  +A  L+ ERD  F+YLGLQILYDRYFLH+   RIE+PQAF+MRVAMGL
Sbjct: 255 LDPRLAQFDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRERRIELPQAFWMRVAMGL 314

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E ++E++A+ FY +LS F F+ STPTLFN+GT  PQLSSCFLTTV DDL GI+ A++
Sbjct: 315 ALEEIDREEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCFLTTVADDLDGIYEAIK 374

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KYSGGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 375 DNALLSKYSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 434

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV  N  WTLFSP+EV+
Sbjct: 435 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVEANGQWTLFSPNEVA 494

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G+ F+  YE+YER AD GEI +F+++ A+ LWRKMLTMLFETGHPWITFKDPCN
Sbjct: 495 DLHDLTGQAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTMLFETGHPWITFKDPCN 554

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------------- 614
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+AH                  
Sbjct: 555 LRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLRAGLPGQGLRTEASADE 614

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D DKLA T+R A+R+LDNVID+N + + KA+ SN  HR +GLGLMGF  AL  L 
Sbjct: 615 LLALVDTDKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFSDALLALR 674

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPYAS  AVE AD S E IS+HAI AS +LA+ERG+Y SF GSLW QG+ P+DSI LLA 
Sbjct: 675 IPYASQAAVEFADISQELISYHAIDASADLARERGSYRSFPGSLWSQGILPLDSIELLAR 734

Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++R+ RL W+ L+ +VK  GMRNSNC+AIAPTATI+NI GVSQ I+P YQNLY
Sbjct: 735 SRVAGVDVDRSQRLDWESLRTKVKG-GMRNSNCLAIAPTATISNIVGVSQGIEPIYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN++LV +LK  DLWDE M++DLKY DGS+  I+RIP+ LK ++A AFE
Sbjct: 794 VKSNLSGEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPIDRIPEALKPLYANAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDP WL+E+A+RRQKW+DQ+QSLNLY  +PSGKK+D  YR AW  GLKTTYYLRS  AT+
Sbjct: 854 IDPQWLVEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWRRGLKTTYYLRSLGATA 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
            EKST+    G LNAVP           G   +C   D  CE CQ
Sbjct: 914 AEKSTVS--KGVLNAVP-----------GQVKACAIEDPGCEACQ 945


>gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
 gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
          Length = 1003

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/904 (61%), Positives = 686/904 (75%), Gaps = 18/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGTVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRSLLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  RA   H+  DA   P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRNQARAHDDHA--DAASTPGLNVT- 155

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E AC+ L D VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 156 DNGITRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 215

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 216 MIEKDPAYSQVTARILLHTIRREILE------EEVTQAEMGERYAEYFPQFIKRGVQAEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +  RIEMPQAFFMRVAMGL
Sbjct: 270 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDNVRIEMPQAFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 330 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 450 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 509

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 510 DLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 569

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 570 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTVALDHDKLKR 629

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LH+L  PYASPEAVE A
Sbjct: 630 TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHVLRTPYASPEAVEFA 689

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 690 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGGYVEVDSSE 749

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 750 SMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 809

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP+WL+ESASR
Sbjct: 810 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASR 869

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 870 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 927

Query: 923 LNAV 926
           LNAV
Sbjct: 928 LNAV 931


>gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Paris]
 gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris]
          Length = 942

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/928 (60%), Positives = 698/928 (75%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K     +  L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K + AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGS+NL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIP++LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           + D          P +C+ +D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. SIP3-4]
 gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. SIP3-4]
          Length = 937

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/940 (60%), Positives = 705/940 (75%), Gaps = 28/940 (2%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  ++ LT+  V  L++
Sbjct: 15  LPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISSHMRTEVQALTDTVVAALVR 74

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   +HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ          P L
Sbjct: 75  RKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREKRAAERAAQQAPA------PTL 128

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++ D G  +  + + L  +V EAC  L D V   +++ +  +++YDG+   ++  ALI 
Sbjct: 129 HVLQD-GKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAIRDLYDGMPFDEVRRALIL 187

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   Y EYF +YI+ G+
Sbjct: 188 SARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKTGI 241

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI   RIE+PQ FFMRV
Sbjct: 242 AAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFMRV 301

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+
Sbjct: 302 AMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDGIY 361

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGGKR
Sbjct: 362 QAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKR 421

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTLFSP
Sbjct: 422 KGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLFSP 481

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWITFK
Sbjct: 482 SDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWITFK 541

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDK 620
           DPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH          D  K
Sbjct: 542 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQAK 601

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS  AV
Sbjct: 602 LAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASSAAV 661

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739
           E AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R  ++ ++
Sbjct: 662 EFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVEVD 721

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           R+S L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+F
Sbjct: 722 RSSTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEF 781

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++ATAFE+DP+WL+E+
Sbjct: 782 TVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLVEA 841

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS  ATS EKST +G 
Sbjct: 842 AARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKSTGQG- 900

Query: 920 DGKLNAV----PVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
            G+LNAV    PV+  + S      P  C   D  CE CQ
Sbjct: 901 -GELNAVSSGLPVSAASPSAEPE--PKQCLIDDPGCEACQ 937


>gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
 gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
          Length = 950

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/958 (59%), Positives = 713/958 (74%), Gaps = 26/958 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P+   P       V+V++R+G V++FD +K+S A+ KAF+AVEG GA  S R+  +++ 
Sbjct: 1   MPTTTTPAAVAKAPVRVVRRDGAVSAFDATKVSVAMTKAFLAVEGDGAVASSRLHPLVEE 60

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT Q    LL+H +  + +H+E IQDQVE  LM+ GHH + R YVLYREER+ VRAA + 
Sbjct: 61  LTGQVEAALLKHVRPDVALHVEQIQDQVELVLMRGGHHAVARAYVLYREERAKVRAATAS 120

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +       +++   DG +   +  R+  +V EAC+GL DVS+  VL+ET +N+YDG++
Sbjct: 121 APAP-----TIRVTHPDGQVTPLDWDRVAAVVAEACAGLTDVSADTVLAETRRNLYDGIT 175

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +L TA I ++RTL+E EP+Y+  +AR LL+KLRRE L+ V  +P +AT  +M   Y +
Sbjct: 176 VDELATAQIMAARTLVETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMS--YVD 233

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  Y+E GV    L   +  FDL  LA  ++ ERD AF++LG+Q LYDRYFLH +G R 
Sbjct: 234 YFPAYVELGVSVDRLDPELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRY 293

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT  PQLSSCFLT
Sbjct: 294 ELPQAFFMRVAMGLALREDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLT 353

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL  IF   + NA+LAKYSGGLGNDWTPVRG+GAHI GTNG+SQGV+PFLK+ANDT
Sbjct: 354 TVDDDLDAIFRGYRNNALLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDT 413

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGA CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV 
Sbjct: 414 AVAVNQGGKRKGAACAYLETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVE 473

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +A WTLFSPDE  DLH+LYG  F   Y  YE  ADRGEI+V R++ AV LWR+MLT+LF
Sbjct: 474 ADAEWTLFSPDETPDLHELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLF 533

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H    
Sbjct: 534 ETGHPWITFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPT 593

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D D+LA T RTAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGF  +L +  IPY
Sbjct: 594 GLDRDRLARTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPY 653

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733
           AS EAVE AD SME ISFHA+ AS +LA ERG+Y SF+GSLW +GV PIDSI LLA+ R 
Sbjct: 654 ASSEAVEFADLSMELISFHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARG 713

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             L M+ +S L W  ++ + +  GMRNSN MAIAPTATI+NICGV QSI+P Y+NL+VK+
Sbjct: 714 GALDMDTSSTLDWSSVRDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKA 772

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTV+N  LV +LK R LWD AM+SDLKY DG++  ++R+P +LK ++ATAFE+  
Sbjct: 773 NMSGDFTVLNRHLVADLKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSS 832

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+ASRRQKWIDQAQSLNLYL  PSG+ LD +YR AW  GLKTTYYLRS SAT VEK
Sbjct: 833 DWLVEAASRRQKWIDQAQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEK 892

Query: 914 STLKGVDGKLNAVPV-------------TDPNSSTHSLGIP---SSCT-SDTECEVCQ 954
           STL+G DGKL  V +             +   +    L +P   ++C+ +D +CE CQ
Sbjct: 893 STLRGTDGKLTGVTLPPAAAPAARPAASSPSPAPVPELVLPAEGAACSITDPDCEACQ 950


>gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PA7]
 gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Pseudomonas aeruginosa PA7]
          Length = 963

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE R+  R   
Sbjct: 76  RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 GATSDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  LWRKML+M
Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS   L E 
Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT-ECEVCQ 954
            EKST+    GKLNAV     +              +P +C+ D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter
           turnerae T7901]
 gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I
           [Teredinibacter turnerae T7901]
          Length = 961

 Score = 1158 bits (2995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/958 (59%), Positives = 720/958 (75%), Gaps = 12/958 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+  V + +  +  S+A   P +++   VIKRNG +  +   KI+ A+ KAF+AVEG  A
Sbjct: 10  PTSPVPQANPHSNSSIANAAPGQLR---VIKRNGTLVPYTDDKIAVAMTKAFLAVEGGTA 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + + NLT+Q      +   S   +HIE+IQDQVE +LM++G HK+ R+YVLYR
Sbjct: 67  AASSRIHETVANLTQQISATFKRRMPSGGTIHIEEIQDQVELTLMRTGEHKVARDYVLYR 126

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            ER+ +RA +          P++ ++  DG+L   +  RL  +V EAC+GL+DV  + +L
Sbjct: 127 AERAKLRAEKEKLSQANVDFPEINVLQPDGSLQPLDVMRLHTVVSEACAGLKDVDGEAIL 186

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+Y+G+S  DL T+L+ S+RTL+EKEPNY   TAR L++KLR E L  +    Q 
Sbjct: 187 KEAMRNLYEGVSAEDLNTSLVISARTLVEKEPNYTYATARLLMDKLRAEALAFLDVATQ- 245

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  EM+  YP     YI  G++  LL  ++ DFDL  L   L  ERD  F YLGLQ LY
Sbjct: 246 ATSAEMEMFYPNALPAYISRGIELELLDPALADFDLQLLGAALIPERDQQFTYLGLQTLY 305

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH +G+R E+PQ FFMRVAMGLA++E +K  RA+EFY LLSSF +M STPTLFN+G
Sbjct: 306 DRYFLHSDGTRFELPQIFFMRVAMGLAMREDDKNGRAIEFYRLLSSFDYMSSTPTLFNAG 365

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LT+VPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 366 TLRPQLSSCYLTSVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQ 425

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKVANDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 426 GVVPFLKVANDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTA 485

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NW+PDLFMKRV ++  WTLF+P  V DLHDL+G  FE  YE+YER+A  G IK F+K+ A
Sbjct: 486 NWVPDLFMKRVFEDKEWTLFTPSTVPDLHDLFGLAFEERYEHYEREAAAGNIKPFKKVRA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCN 601
           V LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ ++EE AVCN
Sbjct: 546 VDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCN 605

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D +KL  ++ TAVR+LDNVIDIN ++++ A+ SN  HR +GLG+M
Sbjct: 606 LGSINLAQHVVDGKLDQEKLQRSVDTAVRMLDNVIDINYYSVDTARNSNLRHRPVGLGIM 665

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ + IPY+S  AVE AD SME +S++AISAS  LA ERG+YS+F+GSLW QGV 
Sbjct: 666 GFQDALYKMRIPYSSAAAVEFADRSMEAVSYYAISASSALASERGSYSTFEGSLWSQGVL 725

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI LLA+ R E  +  ++T+ L WD L+  VKT GMRNSN MAIAPTATIANI GVS
Sbjct: 726 PIDSIQLLAKNRGEQFIEQDQTTTLDWDTLRNTVKTQGMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD  M++DLKY++GS+  I+RIPD
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPD 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++P W++++ASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GLKT
Sbjct: 846 DLKLLYATAFEVEPRWIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYRMAWYRGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCT-SDTECEVCQ 954
           TYYLR+ +AT+ EKST+    G LNAV    P  N S     +P +C+  D +CE CQ
Sbjct: 906 TYYLRALAATTTEKSTID--TGSLNAVSSGAPAANISAGPADVPKACSLDDPDCEACQ 961


>gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO1]
 gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2]
 gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa LESB58]
 gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAb1]
 gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
 gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa PAO1]
 gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa LESB58]
 gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
          Length = 963

 Score = 1158 bits (2995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/952 (58%), Positives = 703/952 (73%), Gaps = 17/952 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE R+  R   
Sbjct: 76  RRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNA 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 GAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMAELY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDRYFIHKDGI 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  LWRKML+M
Sbjct: 495 VFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PIDS   L E 
Sbjct: 675 PYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEE 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT-ECEVCQ 954
            EKST+    GKLNAV     +              +P +C+ D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida W619]
 gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida W619]
          Length = 959

 Score = 1157 bits (2994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/948 (58%), Positives = 705/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 ANTDAAVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 196 VAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    YI +GV+  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYIAKGVEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+M
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 554

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 555 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 614

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 615 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 674

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 675 PYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 734

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 735 RGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 793

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 794 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 853

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 854 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 913

Query: 911 VEKSTLKGVDGKLNAVPV---TDPNSSTHSLGIPSSCTSD-TECEVCQ 954
            EKST+    GKLNAV     + P  +     +P +C  D  +CE CQ
Sbjct: 914 TEKSTIN--TGKLNAVSSGGDSAPAQAAGPAPVPKACAIDEPDCEACQ 959


>gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina ymp]
 gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           mendocina ymp]
          Length = 968

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/917 (60%), Positives = 701/917 (76%), Gaps = 11/917 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSSQDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE +++ R A 
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQANKRKAS 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           + S+   P  P ++I   DG+L   +  RL+ I+ EAC GL +V   ++  ET KN+YDG
Sbjct: 136 AGSEIAQP-HPSIRITAADGSLQPLDMGRLQTIIREACEGLAEVDGALIERETLKNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E LT +    Q ATHHEM  LY
Sbjct: 195 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALTFL-GITQSATHHEMVDLY 253

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+++GV+  LL   + ++DL  L   L +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 254 AKALPAYVDKGVEFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDRYFIHKDGI 313

Query: 313 RIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           R E+PQ FFMRVAMGLA++E + +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC
Sbjct: 314 RFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSC 373

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV 
Sbjct: 374 YLTTVPDDLSGIYSAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVV 433

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK
Sbjct: 434 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 493

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++  WTLFSP EV DLHDL GK FE  YE YE   + G+IK+++ I A  LWRKML+
Sbjct: 494 RVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLS 553

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL+ H 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI 613

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            + + D +KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+L H
Sbjct: 614 VDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQH 673

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S  A+E AD SME IS++AI AS +LA+ERGAYS+F+GSLW +G+ P+DS  +L E
Sbjct: 674 IAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPLDSQQILIE 733

Query: 732 VRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            R +  + ++ +  L W  L++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNL
Sbjct: 734 ARGQKYIDVDLSESLDWAPLRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNL 792

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAF
Sbjct: 793 YVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAF 852

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +AT
Sbjct: 853 EVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAAT 912

Query: 910 SVEKSTLKGVDGKLNAV 926
           S EKST+    GKLNAV
Sbjct: 913 STEKSTIN--TGKLNAV 927


>gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Lens]
 gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens]
          Length = 942

 Score = 1156 bits (2991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/928 (60%), Positives = 696/928 (75%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K     +  L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKD-SKHLLIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K + AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIKSE-ATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + I AV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 IRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIP++LK  +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           + D          P +C+ +D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1003]
 gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1003]
          Length = 1000

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/904 (61%), Positives = 686/904 (75%), Gaps = 19/904 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  RA   H +  A   P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARA---HDEQAAGSTPGLSVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E AC+ L D VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV+ A
Sbjct: 629 TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL++R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWSELRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 974

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 713/944 (75%), Gaps = 32/944 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F P+KI+ A+ KAF+AV+G  A+ S R++++++ +T Q    LL+ N +
Sbjct: 44  KIIRRNGAVVGFAPNKIAVAVTKAFIAVQGGQAAASARIRELVEAITSQVTAALLRRNPA 103

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIED+QDQVE +LM+SG H++ R YVLYRE+R+  RAAQ      A   P++++ +
Sbjct: 104 GGTFHIEDVQDQVELALMRSGEHEVARAYVLYREKRAQERAAQK-----AAGVPEVQLHV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++DG     ++ RL  ++ +ACS L + V ++ ++    +++YDG+  +++E AL+ ++R
Sbjct: 159 IEDGVRKPLDTARLAGLLADACSDLGESVKAEPIMHTVLRDLYDGVPMAEVEKALVLAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           ++IE++P Y+ VTAR LL  +R EVL       +  T  +M   Y EYF  +I++G+ A 
Sbjct: 219 SMIEQDPAYSLVTARLLLNSIRHEVLG------EAVTQAQMSERYAEYFPAFIKKGIAAE 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL E +  FDL  LA  L   RD+ F YLGLQ LYDRYFLHI  +RIE+PQAFFMRVAMG
Sbjct: 273 LLDEKLGQFDLARLARVLDAGRDYQFGYLGLQTLYDRYFLHIEENRIELPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E ++E RA+EFY +LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL GI+ A+
Sbjct: 333 LAINEIDRESRAIEFYQVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVTDDLDGIYQAI 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENAML KY+GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENAMLQKYAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP++V
Sbjct: 453 VCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVMEGGDWTLFSPNDV 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYG++F  AY  YER+ADRGE+K++++I A+ LWRKML+MLFETGHPWITFKDPC
Sbjct: 513 PDLHDLYGRKFAEAYTEYERKADRGELKLYKRIPALQLWRKMLSMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+ H  + + D DKL +TI T
Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDHEVAVCNLGSVNLVNHLKDGKLDLDKLKNTIHT 632

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNV+D+N + + KA+ SN  HR +GLG+MGFQ AL  L + YAS +AVE AD SM
Sbjct: 633 AMRMLDNVVDVNYYAVGKARNSNLKHRPVGLGIMGFQDALQELRVAYASNDAVEFADRSM 692

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E ++++A  AS ELAQERG YSS++GSLW +G+ P DS  LL E R   L ++ ++ L W
Sbjct: 693 EAVAYYAYWASTELAQERGRYSSYEGSLWSKGILPHDSNRLLLEERGGYLEVDSSATLDW 752

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L++R+   GMRNSNC+AIAPTATIANI GVS SI+P+YQNLYVKSN+SG+FTV N +L
Sbjct: 753 DSLRQRIAQYGMRNSNCLAIAPTATIANIVGVSASIEPTYQNLYVKSNLSGEFTVANKYL 812

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK+  +WDE M++D+KY DGS+  I+RIP +L+ ++ATAFE++P WL+E ASRRQKW
Sbjct: 813 VADLKKLGMWDEVMVADIKYFDGSLARIDRIPAELRALYATAFEMEPSWLVECASRRQKW 872

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYYLR+  ATS EKST KG  G+LNAV
Sbjct: 873 IDQAQSLNIYMAGASGKKLDDIYKLAWLRGLKTTYYLRTLGATSAEKSTGKG--GELNAV 930

Query: 927 P------VTDPNSSTHSLGIP----SSCTSDT------ECEVCQ 954
                  ++  +++  +L +P      CT         ECE CQ
Sbjct: 931 SAHVGGGMSAMDAAAANLPVPEIEGKVCTMRPGDPGFEECEACQ 974


>gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           mobilis JLW8]
 gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           mobilis JLW8]
          Length = 938

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/933 (60%), Positives = 699/933 (74%), Gaps = 22/933 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVI+RNG   +F+  KIS AI KAF+AVEG  ++ S RV+D + +L++     L++   
Sbjct: 21  LQVIRRNGAAVTFNLDKISIAITKAFLAVEGNHSAASQRVRDQVTSLSQIVNHALIRRLP 80

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  RAA+  + S+   A  + I 
Sbjct: 81  TGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKATTSEPSHALNVNI- 139

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             DG L+  N K+L  +V EAC  L  +V   +V+ +  +++YDG+  +++  ALI S+R
Sbjct: 140 --DGKLVPLNIKQLNEMVAEACLNLGNEVDVNLVVEQAVRDLYDGIPFTEVYKALILSAR 197

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +LIE EP Y  VTAR  L+ +R EVL       ++ +H EM   Y EYF RYI+ G+ A 
Sbjct: 198 SLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAEMDAHYAEYFPRYIKIGIDAD 251

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  LAN L  ERDF F YLG+Q LYDRYFLHI   RIE+PQ FFMRVAMG
Sbjct: 252 LLDPRLAQFDLDKLANALVKERDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMG 311

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E ++E RA+EFYN+LS+F FM STPTLFN+GT H QLSSC+LTTV DDL GI+  +
Sbjct: 312 LAINEIDREARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGI 371

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGKRKGA
Sbjct: 372 KENALLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGA 431

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+   WTLFSP +V
Sbjct: 432 VCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEQGEWTLFSPSDV 491

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD YGK FE AY  YER+AD GEIK+F+++ A+ +WRKML+MLFETGHPWITFKDPC
Sbjct: 492 PDLHDKYGKAFEKAYVEYERRADTGEIKLFKRVPAIQMWRKMLSMLFETGHPWITFKDPC 551

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
           NIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL H      N + D DKL +
Sbjct: 552 NIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLLQHLKEVNGNLELDNDKLQA 611

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI+  +R+LDNV+DIN + + KA+ SN  HR +G+G+MGFQ+ LH + IPYAS +AVE A
Sbjct: 612 TIKVGMRMLDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQNCLHAMRIPYASMDAVEFA 671

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTS 742
           D +ME + ++A  AS  LA+ERG YSSFKGSLWDQG+ P+D++ LL AE    + ++R+ 
Sbjct: 672 DRAMEMVCYNAYWASTVLAEERGPYSSFKGSLWDQGILPLDTLNLLEAERGGNVEVDRSK 731

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+FT+V
Sbjct: 732 TLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIV 791

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LVN+LK R LWD  M+SDLKY DGS+  IER+P DLK+++ATAF++DP WLIE+A+R
Sbjct: 792 NEQLVNDLKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQLYATAFDVDPSWLIEAAAR 851

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYLRS  AT+ EKST  G  G+
Sbjct: 852 RQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSLGATAAEKST--GSGGE 909

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           LNAV       +T     P  C+ D  +CE CQ
Sbjct: 910 LNAVSA----HTTAPEPAPKMCSIDNPDCESCQ 938


>gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 962

 Score = 1155 bits (2988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/931 (59%), Positives = 701/931 (75%), Gaps = 9/931 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+VIKRNG V S+D SKI+ AI KAF+AVEG  A+ S R+ + ++ L+ Q      +   
Sbjct: 36  VRVIKRNGTVVSYDDSKIAVAITKAFLAVEGGSAAASSRIHETVEKLSLQVSAIFKRRMP 95

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIEDIQDQVE +LM+SG HK+ R+YVLYREER   R  +  S+      P +++ 
Sbjct: 96  SGGTIHIEDIQDQVELALMRSGEHKVARDYVLYREERRLQREEKKASEP-TKAHPTIRVT 154

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+ +  +  R+E++V EAC GL DV +++++ E  KN+YDG+  +D+ T+L+ +SRT
Sbjct: 155 LSDGSQVPLDLGRMEVVVSEACDGLADVKAQVIIDEALKNLYDGVPIADVNTSLVITSRT 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY+ VTAR LL+ LR E L  +      AT  EM  LY +    YI +G++  L
Sbjct: 215 LVEKEPNYSYVTARLLLDNLRAEALPFL-GIANSATQSEMASLYAKALPAYINKGIELEL 273

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L  +++D+DL  L   L   RD  F YLGLQ LYDRYF+H N  RIE+PQ FFMRVAMGL
Sbjct: 274 LAPNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIELPQIFFMRVAMGL 333

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A +E  +E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+Q
Sbjct: 334 AYREENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAIQ 393

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 394 DNAMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 453

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLFMKRV  +  WTLFSP++V 
Sbjct: 454 CAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFSPNDVP 513

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG+ FE  Y  YE Q   G++K+F+ + A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 514 DLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFETGHPWITFKDPCN 573

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           IRSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H + N  D  KL  TI TA
Sbjct: 574 IRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGLDLSKLEKTITTA 633

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+  H+ Y S +AVE AD SME
Sbjct: 634 VRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGSDQAVEFADRSME 693

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746
            IS+ AI AS  LA+ERG+YS+F+GSLW QG+ PIDS+  L   R  D + ++++  L W
Sbjct: 694 AISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGNDYIDVDQSQTLDW 753

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+ RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN  L
Sbjct: 754 SSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPHL 813

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWD  M++DLKY++GS+ NI+R+P ++K+++ATAFE++P W++++ASRRQKW
Sbjct: 814 VKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPRWIVDAASRRQKW 873

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +AT  EKST+    G LNAV
Sbjct: 874 IDQAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKSTID--TGSLNAV 931

Query: 927 P--VTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
                 P ++     +P +C+  D +CE CQ
Sbjct: 932 SSKTEAPVAAAGPAPVPEACSLDDPDCEACQ 962


>gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 963

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/954 (58%), Positives = 710/954 (74%), Gaps = 21/954 (2%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+ P L+   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNPDLSATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA  
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERA-- 133

Query: 133 SHSKSDAPIA--PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
           + S +DAP+   P ++I   DG+L   +  RL  IV EAC GL++V   ++  ET KN+Y
Sbjct: 134 TRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRETLKNLY 193

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L+ + +  + ATHHEM  
Sbjct: 194 DGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFL-EVAESATHHEMVD 252

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           LY +    Y+ +G++  LL+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +
Sbjct: 253 LYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKD 312

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT  PQLSS
Sbjct: 313 GVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSS 372

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV
Sbjct: 373 CYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKV 432

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFM
Sbjct: 433 VNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFM 492

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IK+F+ + A  LWRKML
Sbjct: 493 KRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKML 552

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           +MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H
Sbjct: 553 SMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNH 612

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             + + D  KL  T+ TAVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L 
Sbjct: 613 IVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQ 672

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS  +L 
Sbjct: 673 HIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILI 732

Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQN
Sbjct: 733 AQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQN 791

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++ATA
Sbjct: 792 LYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATA 851

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +A
Sbjct: 852 FEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAA 911

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954
           TS EKST+    GKLNAV     +     L        +P +C  D  +CE CQ
Sbjct: 912 TSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1001]
 gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1001]
          Length = 1006

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/904 (61%), Positives = 684/904 (75%), Gaps = 19/904 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  R    H +  A   P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDEQAAASTPGLSVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E AC+ L D VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV+ A
Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWTELRSRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           longbeachae NSW150]
 gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Legionella longbeachae NSW150]
          Length = 941

 Score = 1154 bits (2985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/928 (60%), Positives = 697/928 (75%), Gaps = 15/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V ++D +KI  AI KAF+A EG  AS S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVNYDDTKIKIAITKAFIADEGGTASTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   VHIEDIQDQVE +LM+SGH+K+ R YVLYREE    R  ++  K  A     L I 
Sbjct: 87  SGGAVHIEDIQDQVELALMRSGHYKVARAYVLYREEHRKAR--ENELKKQASDQKLLLIT 144

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M DG L   +++R++ IV EAC  L+ V ++ V+ +  +N+Y+    +D+  ALI ++RT
Sbjct: 145 MPDGELKPLDTERMDTIVHEACRNLEHVDAEPVIKDALRNLYNEAKFADVHKALIMAART 204

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E L  +  +   AT  EM  LYP YF  Y+  G+K  +
Sbjct: 205 LVEKEPNYTYVSARLLLDCLRIEALHKLGIEAD-ATFDEMSQLYPAYFKIYVAHGIKQGM 263

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E M DFDL  L   L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 264 LDEKMADFDLEKLGKALLPERDMKFTYLSLQTLYDRYFIHDQGIRYELPQAFFMRVAMGL 323

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E +K ++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 324 AIREKDKNEKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTVPDHLDGIYSAIK 383

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +G+HI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 384 DNALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 443

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA WIPDLFM RV ++A WTLFSPDEV 
Sbjct: 444 CAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVREDADWTLFSPDEVP 503

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +LHD +GK FE  Y  YE +A +G +K  + +SAV LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 504 ELHDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFETGHPWMTFKDPCN 563

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGSINL AH  N + D +KL  TI+TA
Sbjct: 564 LRSPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDIEKLKQTIKTA 623

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+ L I YAS EAVE AD SME
Sbjct: 624 VRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYASEEAVEFADSSME 683

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YSS++GSLW +G+ PIDSI LL + R++ L  +R+ RL W+
Sbjct: 684 LISYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQARNKYLEQDRSQRLDWE 743

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV
Sbjct: 744 SLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLV 803

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIP DLKK +AT+FEIDP+WL+++ASRRQKWI
Sbjct: 804 ADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIWLVDAASRRQKWI 863

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ EPSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   D  LNAV 
Sbjct: 864 DQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKTTYYLRSMGASNAEKSTV--TDSALNAVK 921

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           +            P +C+  D +CE CQ
Sbjct: 922 IMTE--------APKACSILDPDCEACQ 941


>gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 979

 Score = 1151 bits (2978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/905 (60%), Positives = 686/905 (75%), Gaps = 16/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++   S
Sbjct: 39  KIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQGAASARVREIVEQLTDNVVRALVRSRPS 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
              +HIED+QDQVE SLM+SG H++ R YVLYRE+R   RA+ S           + I +
Sbjct: 99  GGAIHIEDVQDQVELSLMRSGEHEVARAYVLYREKRKAERASASAQAVARVQEAGISINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D G     +   L  +++ ACSGL D VS++ +L ET KN+Y+G+  + +  + I ++R
Sbjct: 159 TDAGVTKPLDIVALHALIDNACSGLGDAVSAEPILKETLKNLYEGVPMTQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIEK+P+Y++VTAR LL  +R+E+L T      + T  EM   Y EYF ++I  G+ A 
Sbjct: 219 TLIEKDPDYSQVTARILLHTIRKEILGT------EVTQAEMATRYAEYFPKFIARGIAAE 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMG
Sbjct: 273 LLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFY LLSSF FM STPTLFNSGT+  QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LALNEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVSDDLEGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +NA WTLFSP   
Sbjct: 453 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENAEWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKVGKAFEKAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           NIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH A         D+ KL 
Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLAKQADGSYALDHAKLQ 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PY+S  AV+ 
Sbjct: 633 KTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVKF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R   L ++ +
Sbjct: 693 ADTSMEAVCYYAYQASTELAEERGRYETYTGSLWDRGILPQDSLKLLAEERGGYLDVDMS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S + W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 SSMDWTSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E+AS
Sbjct: 813 VNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVS--RG 930

Query: 922 KLNAV 926
            LNAV
Sbjct: 931 SLNAV 935


>gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. H160]
 gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. H160]
          Length = 1003

 Score = 1151 bits (2977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/904 (60%), Positives = 683/904 (75%), Gaps = 18/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  RA   H+  +A   P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRNQARAHDEHA--EAASTPGLNVT- 155

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E AC+ L D VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 156 DNGITRPLDMAALRSIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 215

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ G+ A L
Sbjct: 216 MIEKDPAYSQVTARILLHTIRREILE------EEVTQAEMGERYAEYFPQFIKRGIGAGL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 270 LDDKLQQFDLKRLGAALDANRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 330 SLNEIDREARAIEFYNILSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVDDDLDGIYEALK 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 450 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 509

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+K+ A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 510 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKLPAAQLWRKMLGMLFETGHPWITFKDPCN 569

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 570 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLALDHDKLKR 629

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LH+L  PYAS EAVE A
Sbjct: 630 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHMLRTPYASQEAVEFA 689

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 690 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSVALLAEARGGYVEVDSSE 749

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 750 SMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 809

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP+WL+ESASR
Sbjct: 810 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPVWLVESASR 869

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 870 RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 927

Query: 923 LNAV 926
           LNAV
Sbjct: 928 LNAV 931


>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae
           SmR1]
 gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/901 (60%), Positives = 684/901 (75%), Gaps = 11/901 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V+ L++   +
Sbjct: 41  RIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPT 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  +     +AP+L +  
Sbjct: 101 GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQGAATKTEVVAPQLHVT- 159

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DG     +   +  ++  AC GL++ V  + +L+ET KN+YDG+   +L  + I ++R 
Sbjct: 160 EDGQSRPLDINEVRSLIAAACVGLEEHVDGEAILAETVKNLYDGVPVEELYKSAILAARA 219

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EK+P Y++VT+R L+  +R+EV        ++    +    Y EYF +Y+++G++A L
Sbjct: 220 LMEKDPAYSQVTSRLLMHTIRKEVFG------KEVAQADAPAEYLEYFPQYVKKGIEAEL 273

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  LA  LK ERD  F Y+GLQ LYDRYFLHI G+RIEMPQAF+MRVAMGL
Sbjct: 274 LDTKLAQFDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGL 333

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY+LLSSF FM STPTLFNSGT+  QLSSC+LTTV DDL GI+ A++
Sbjct: 334 ALNEIDRETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIK 393

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+LAK++GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 394 ENALLAKFAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 453

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +  
Sbjct: 454 CAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDTP 513

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G+ FE AY  YE +A RGE+K+F+K+ A  LWRKML+MLFETGHPWITFKDPCN
Sbjct: 514 DLHDKFGRAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFKDPCN 573

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH  N + D+ KL  TIRTA
Sbjct: 574 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHLVNGELDHAKLQKTIRTA 633

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+  +PYAS +AVE AD SME
Sbjct: 634 MRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFADRSME 693

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            + ++A  AS ELA+ERG Y+S++GSLWD+G+ P DS+ LLA+ R   L  + T  L W 
Sbjct: 694 AVCYYAYMASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGGYLETDSTETLDWA 753

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FT +N +LV
Sbjct: 754 ALRARIAEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLV 813

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWI
Sbjct: 814 RDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRRQKWI 873

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+   SGK+LD  Y+ AWL GLKTTYYLR+  AT  EKST +   G LNAV 
Sbjct: 874 DQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRA--GALNAVA 931

Query: 928 V 928
           V
Sbjct: 932 V 932


>gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix
           cholodnii SP-6]
 gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix
           cholodnii SP-6]
          Length = 958

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/939 (58%), Positives = 693/939 (73%), Gaps = 24/939 (2%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G Q+I+RNG V +F+P KI+ A+MKAF+AV G   + S  V++ +  LTE  V  L++  
Sbjct: 32  GYQIIRRNGAVVAFEPHKITVALMKAFLAVHGTHGAASASVRETVDGLTEAVVRALMRSR 91

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S    HIEDIQDQVE  LM+ GHH + R YVLYRE R+  RA+Q      AP+A +  +
Sbjct: 92  PSGGSFHIEDIQDQVELGLMRGGHHDVARAYVLYRERRTQERASQGR----APVAAEPAV 147

Query: 148 MMDD-GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ D G  +  +  RL  ++E AC+ L  +     VL+ET +N+YDG+S  ++  A I +
Sbjct: 148 MVTDRGQRVPLDMARLAGLIEAACADLGPEAIGAPVLAETRRNLYDGVSIDEVYKASILA 207

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +RTLIEK+P+Y++VTAR L+  +RR+VL       ++ T  EM   Y +YF  +I++GV 
Sbjct: 208 ARTLIEKDPSYSRVTARLLMHTIRRDVLG------EEVTQAEMAARYADYFPAFIKKGVD 261

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           A LL E M  FDL  L   LK ERD  F+YLGLQ LYDRYFLHI   RIEMPQAFFMRVA
Sbjct: 262 AELLDERMAQFDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMPQAFFMRVA 321

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGLAL E ++E RA+EFY +LS+F FM STPTLFN+GTR  QLSSC+LTTVPDDL GI+ 
Sbjct: 322 MGLALNEIDREARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVPDDLEGIYD 381

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK
Sbjct: 382 AIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 441

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP 
Sbjct: 442 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPA 501

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
              DLHDL+G  FE AY  YE +ADRGEI  F+++ AV LWRK+L+MLFETGHPWITFKD
Sbjct: 502 NCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETGHPWITFKD 561

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            CN+RSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL  H  + + D  KL  T+
Sbjct: 562 ACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVDQAKLCRTV 621

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ AL+ L +PYAS EAVE AD 
Sbjct: 622 TTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASNEAVEFADR 681

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRL 744
           SME + +HA  AS ELA ERG Y++++GSLWD+G+ PIDSI LLAE R   L ++  + L
Sbjct: 682 SMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYLDVDTRTTL 741

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTVVN 
Sbjct: 742 DWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNE 801

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK   LWD+ M+ DLK+ DGS+  I+R+P++LK+++ATAFE++  WL+E+A+RRQ
Sbjct: 802 YLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWLVEAAARRQ 861

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST+K   G +N
Sbjct: 862 KWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTVKA--GSMN 919

Query: 925 AVPVTDPNSSTHSLGIPSS---------CTSDTECEVCQ 954
           AV      S++    + S+            D  CE CQ
Sbjct: 920 AVSNGAHGSASEPAAVSSNEPATDVKFCAIDDPSCEACQ 958


>gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf-5]
 gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha chain [Pseudomonas
           fluorescens Pf-5]
          Length = 963

 Score = 1150 bits (2975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/936 (58%), Positives = 698/936 (74%), Gaps = 14/936 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA +S S+      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERATRSTSEEPVQAHPSIRIT 151

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL++V   ++  ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 152 RTDGSFAPLDMGRLNTIVSEACEGLEEVDGDLIQRETLKNLYDGVALKDVNTALVMTART 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  + +  + ATHHEM  LY +    Y+ +G++  L
Sbjct: 212 LVEREPNYSFVTARLLMDTLRAEGLGFL-EVAESATHHEMAELYAKALPAYVAKGIEFEL 270

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 271 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 330

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E ++E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+GA+ 
Sbjct: 331 AIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIH 390

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 391 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 450

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 451 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFSPSEVP 510

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL GK FE  YE YE   +  +IK+F+ + A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 511 DLHDLTGKAFEERYEYYEALTEYNKIKLFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCN 570

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D  KL  T+ TA
Sbjct: 571 LRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTAKLQRTVNTA 630

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HI Y S  AVE AD+SME
Sbjct: 631 VRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSME 690

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R +  + ++    L W
Sbjct: 691 AVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNESLDW 750

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +L
Sbjct: 751 APVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYL 809

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE++  W++++ASRRQKW
Sbjct: 810 VRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKW 869

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV
Sbjct: 870 IDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNAV 927

Query: 927 PVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954
                +     L        +P +C  D  +CE CQ
Sbjct: 928 SSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
 gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
          Length = 1001

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/903 (60%), Positives = 684/903 (75%), Gaps = 19/903 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  R    H +  A   P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDEQVAGSTPGLTVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E AC+ L D VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVSRPLDMAALRGIIESACANLGDAVSAEPIVAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQAEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+K+ A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKVPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV+ A
Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELAQERG YSS++GSLWD+G+ P DS+ LLA+ R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL++R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWTELRQRIATYGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LNA 925
           LNA
Sbjct: 927 LNA 929


>gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           thailandensis E264]
          Length = 995

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/908 (60%), Positives = 689/908 (75%), Gaps = 17/908 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R  A   +  ++P    + + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G + + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+++KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVPVT 929
            LNAVP +
Sbjct: 930 ALNAVPTS 937


>gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
 gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
          Length = 968

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/901 (60%), Positives = 692/901 (76%), Gaps = 8/901 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE ++  R A + S+   P  P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQASKRKASAGSEIAQP-HPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G +   +  RL+ I+ EAC GL +V   ++  ET KN+YDG++E D+ TAL+ ++RT
Sbjct: 151 NAAGEVQPLDMGRLQTIIREACEGLAEVDGSLIERETLKNLYDGVAEKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ +R E L+ +      ATHHEM  LY +    Y+E+GV+  L
Sbjct: 211 LVEREPNYSYVTARLLMDNIRAEALSFL-SIAASATHHEMADLYAKALPAYVEKGVEFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LDAKLKTFDLEKLGAAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGL 329

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A++E + +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+GA+
Sbjct: 330 AIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAI 389

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 390 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP EV
Sbjct: 450 VCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFSPSEV 509

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL GK FE  YE YE   + G+IK+++ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 PDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS+NL+ H  + + D +KL  T++T
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIVDGKLDIEKLGRTVKT 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++++A+ SN  HR +GLGLMGFQ AL+L HI Y S  A+E AD+SM
Sbjct: 630 AVRMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIEFADKSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AI AS +LA ERG+YS+F+GSLW +G+ P+DS  LL E R +  + ++ +  L 
Sbjct: 690 EAISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQLLIEARGQKYIDVDLSESLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  +++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPIRERVKK-GIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE++  W++++ASRRQK
Sbjct: 809 LVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 926

Query: 926 V 926
           V
Sbjct: 927 V 927


>gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis Bt4]
          Length = 953

 Score = 1149 bits (2972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/906 (60%), Positives = 688/906 (75%), Gaps = 17/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R  A   +  ++P    + + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G + + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+++KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 930 ALNAVP 935


>gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf0-1]
 gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 964

 Score = 1149 bits (2971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/953 (58%), Positives = 705/953 (73%), Gaps = 18/953 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+   LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 19  DSNSDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ RS  RA +
Sbjct: 76  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDARSKERATR 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           + +++     P ++I   DG+L   +  RL  IV EAC GL +V   ++  ET KN+YDG
Sbjct: 136 TTAEAPVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VALNDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVAESATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+ +G++  LL+  +  FDL  L   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 255 AKALPAYVAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 435 DTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 494

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLT 551
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  G+IK+F+ I A  LWRKML+
Sbjct: 495 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 554

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H 
Sbjct: 555 MLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI 614

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            + + D  KL  TI  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L H
Sbjct: 615 VDGKLDTAKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQH 674

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPY S  AVE AD+SME +S++AI AS +LA ERG+Y +F+GSLW +GV P+DS  +L E
Sbjct: 675 IPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIE 734

Query: 732 VRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            R +  + ++ T  L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNL
Sbjct: 735 ARGQKYIDVDLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNL 793

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++ATAF
Sbjct: 794 YVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAF 853

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +AT
Sbjct: 854 EVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAAT 913

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSD-TECEVCQ 954
           S EKST+    GKLNAV     +     L        +P +C  D  +CE CQ
Sbjct: 914 STEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964


>gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 7894]
          Length = 995

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/909 (60%), Positives = 690/909 (75%), Gaps = 19/909 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER--SDVRAAQSHSKSDAPIAPKLKI 147
               HIEDIQDQVE +LM+ G H + R YVLYRE+R    V A ++ +   +P A  + +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGETEAAEASP-AGGINV 157

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++
Sbjct: 158 T-DNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAA 216

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RT+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A
Sbjct: 217 RTMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEA 270

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAM
Sbjct: 271 ELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAM 330

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ A
Sbjct: 331 GLALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEA 390

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 391 LKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 450

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP  
Sbjct: 451 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPST 510

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDP
Sbjct: 511 CPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 570

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621
           CN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL
Sbjct: 571 CNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKL 630

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE
Sbjct: 631 KRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVE 690

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ 
Sbjct: 691 FADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDT 750

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++ L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FT
Sbjct: 751 SATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 810

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+A
Sbjct: 811 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAA 870

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    
Sbjct: 871 SRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 928

Query: 921 GKLNAVPVT 929
           G LNAVP +
Sbjct: 929 GALNAVPTS 937


>gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis TXDOH]
          Length = 950

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/906 (60%), Positives = 688/906 (75%), Gaps = 17/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIM 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R  A   +  ++P    + + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESPTGGSINVT 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G + + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 159 -DNGVMRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSAILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+++KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLYKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  P+AS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 930 ALNAVP 935


>gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
            rhizoxinica HKI 454]
 gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1)
            [Burkholderia rhizoxinica HKI 454]
          Length = 1046

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/926 (59%), Positives = 694/926 (74%), Gaps = 21/926 (2%)

Query: 30   QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT+  V  L++   +
Sbjct: 95   KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRESVETLTQAVVRALVRSRPN 154

Query: 90   ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                HIEDIQDQVE +LM++G H + R YVLYRE+R+  RA   H  +  P    L +  
Sbjct: 155  GGTFHIEDIQDQVELALMRAGEHNVARAYVLYREKRAAERA---HEVAQQPAQGGLNVN- 210

Query: 150  DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D+G +   +   L  ++  AC GL + VS++ +++ET KN+YDG+  S +  + I ++RT
Sbjct: 211  DNGIVRPLDLAALRNVITAACDGLGEAVSAEPIVAETVKNLYDGVPLSQVYDSAILAART 270

Query: 209  LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            +IEKEP Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV+A L
Sbjct: 271  MIEKEPAYSQVTARLLLHTIRREILG------EEVLQSEMGARYAEYFPQFLKRGVEAEL 324

Query: 269  LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
            L E ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G RIEMPQAFFMRVAMGL
Sbjct: 325  LDEKLLQFDLKKLGDALDASRDLKFGYLGLQTLYDRYFLHVDGQRIEMPQAFFMRVAMGL 384

Query: 329  ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            AL E ++E RA+EFYN+LS+F FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 385  ALNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALK 444

Query: 389  ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 445  ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 504

Query: 449  CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 505  CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFSPSSCP 564

Query: 509  DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            DLHD +G EFE AY  YE +A RGE+K+F+KI A  LWRKML MLFETGHPWITFKDPC 
Sbjct: 565  DLHDKFGAEFEQAYVAYEEKAARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCX 624

Query: 569  IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
            +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 625  VRSPQQHVGVVHSSNLCTEITLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDHDKLKR 684

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS +AVE A
Sbjct: 685  TISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQAVEFA 744

Query: 684  DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
            D SME I ++A  AS ELA ERG YSS++GSLWD+G+ P D++ LLA+ R   + ++ + 
Sbjct: 745  DRSMEAICYYAYWASTELASERGRYSSYRGSLWDRGILPQDTLKLLADSRGGYVEVDSSE 804

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
             + W  L++R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 805  TMDWAALRERIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 864

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL++ +ATAFE+DP WL+E+A+R
Sbjct: 865  NEYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPADLRETYATAFEVDPKWLVEAAAR 924

Query: 863  RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            RQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 925  RQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKTTYYLRTIAATHVEKSTV--AHGA 982

Query: 923  LNAVPVTDPN-SSTHSL-GIPSSCTS 946
            LNAVP +D    + H   G+  S T+
Sbjct: 983  LNAVPSSDGGVGAMHGAGGVSGSATA 1008


>gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phymatum STM815]
 gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phymatum STM815]
          Length = 997

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/936 (58%), Positives = 695/936 (74%), Gaps = 26/936 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P + + +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 18  RPVEGLAQGADALAPQTGY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 71

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM++G H + R YVLY
Sbjct: 72  GAASARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRTGEHNVARAYVLY 131

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R+  R  +     DAP+A  L +  D+G     +   L  ++E AC+ L D V+++ 
Sbjct: 132 REKRTQERGHEV----DAPVASGLNVT-DNGVTRPLDMAALRGLIESACANLGDAVNAEP 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VT+R LL  +RRE+L       
Sbjct: 187 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILE------ 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF  +I+ GV A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 241 EEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI+G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 301 LYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 361 SGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 481 TANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 541 PAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 600

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 601 NLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRP 660

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LH+L  PYAS EAVE AD SME + ++A  AS ELA+ERG YS+++GSL
Sbjct: 661 VGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAVCYYAYWASTELAEERGRYSTYRGSL 720

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLA+ R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 721 WDRGILPQDTLKLLADARGGYVEVDSSESMDWASLRSRIATHGMRNSNCVAIAPTATISN 780

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I
Sbjct: 781 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLSRI 840

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+D  WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 841 DRVPADLRAIYATAFEVDATWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 900

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
            GLKTTYYLR+ +AT VEKST+    G LNAVP  D
Sbjct: 901 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGD 934


>gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phytofirmans PsJN]
 gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phytofirmans PsJN]
          Length = 1001

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/904 (60%), Positives = 682/904 (75%), Gaps = 19/904 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  R    H        P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E ACS L D VS+  +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREILK------EEVTQTEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G +FE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDLFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV+ A
Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELAQERG YSS++GSLWD+G+ P DS+ LLA+ R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLADARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis C6786]
          Length = 944

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/912 (59%), Positives = 684/912 (75%), Gaps = 15/912 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R     +      A     + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAADVETSAAGGINVT 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  ++  AC GL D VS + ++SET KN+YDG+  + +  + I ++RT
Sbjct: 159 DNGVTRPLDMSALHALIVSACEGLGDAVSPEPIVSETVKNLYDGVPMTQVYDSAILAART 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A L
Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSMRYAEYFPQFLKRGVEAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP    
Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL  
Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKR 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS  AVE A
Sbjct: 633 TVGVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ ++
Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 753 TLDWPVLRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+R+P DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930

Query: 923 LNAVPVTDPNSS 934
           LNAVP +  +S 
Sbjct: 931 LNAVPTSGGSSG 942


>gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha H16]
 gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia
           eutropha H16]
          Length = 977

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/906 (60%), Positives = 696/906 (76%), Gaps = 18/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++   +
Sbjct: 37  KIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQGAASARVREIVEQLTDNVVRALVRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK-LKIM 148
              +HIED+QD VE +LM+SG H++ R YVLYRE+R D RA Q+++++ A +    + + 
Sbjct: 97  GGAIHIEDVQDHVELALMRSGEHEVARAYVLYREKRKDERA-QANAQAVARVQEGGISVN 155

Query: 149 MDDGTLIS-FNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + DG +    +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I ++
Sbjct: 156 VTDGGVTHVLDIAALHDLIDNACSGLGNAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 215

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P+Y++VTAR LL  +R+E+L T      + T  EM   Y EYF ++I  G++A
Sbjct: 216 RTLIEKDPDYSQVTARILLHTIRKEILGT------EVTQAEMSTRYAEYFPKFIARGIEA 269

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAM
Sbjct: 270 ELLDEQLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAM 329

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ A
Sbjct: 330 GLALNEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEA 389

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 390 LKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 449

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP  
Sbjct: 450 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPAT 509

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD  GKEFE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDP
Sbjct: 510 CPDLHDKVGKEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITFKDP 569

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621
           CNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH A         D+ KL
Sbjct: 570 CNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMAKQADGTYALDHAKL 629

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             T+RTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+L  PY+S  AV+
Sbjct: 630 QKTVRTAMRMLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDAAVK 689

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P DS+ LLAE R   L ++ 
Sbjct: 690 FADTSMEAVCYYAYHASTELAEERGRYSSYEGSLWDRGILPQDSLKLLAEERGGYLDVDM 749

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++ + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FT
Sbjct: 750 SATMDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 809

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E+A
Sbjct: 810 VVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAA 869

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+ +AT VEKST+    
Sbjct: 870 SRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTMAATHVEKSTVS--R 927

Query: 921 GKLNAV 926
           G LNAV
Sbjct: 928 GSLNAV 933


>gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 969

 Score = 1147 bits (2966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/943 (58%), Positives = 694/943 (73%), Gaps = 30/943 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++++RNG V +F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V  L++   +
Sbjct: 39  RILRRNGAVVAFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTATVVAALVRRQPA 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  ++   P A  +++ +
Sbjct: 99  GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERALQQAAR---PAAASVQLHV 155

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            +DG     + +++  +++ AC GL+  V +  + +ET KN+YDG+   +L  + I ++R
Sbjct: 156 TEDGQRRLLDMQQVHKLIDAACIGLEKHVDANAIFAETVKNLYDGVPVEELHKSAILAAR 215

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            L+EK+P Y  VTAR L+  +R+EV        ++    + Q  Y EYF ++I  G+ A 
Sbjct: 216 ALMEKDPAYTTVTARILMHVIRKEVFG------KEVAQADAQAHYLEYFPQFIHNGIAAE 269

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  LA  L  +RD  F Y+GLQ LYDRYFLHI   RIEMPQAF+MRVAMG
Sbjct: 270 LLDAKLAGFDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYMRVAMG 329

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E+RA+EFYNLLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ A+
Sbjct: 330 LALNEAKREERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEGIYDAI 389

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+LAKY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 390 KDNALLAKYAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV +   W LFSP EV
Sbjct: 450 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLFSPSEV 509

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD  G+ FE AY  YE  A RGE+++F+K+ A+ LWRKML+MLFETGHPWITFKDPC
Sbjct: 510 PDLHDKVGRAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWITFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH  + Q D+ KL  TIR 
Sbjct: 570 NIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQKTIRI 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ  LH++ +PYAS EAV  AD+SM
Sbjct: 630 AMRMLDNVIDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSFADKSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E + ++A +AS ELA+ERGAYSS+KGSLWD+G+ P DS+ LL E R   L  + +  + W
Sbjct: 690 EAVCYYAYTASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGGYLETDLSEAMDW 749

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+ R+K  GMRNSNC+AIAPTATI+NI GV+  I+P+YQNLYVKSN+SG+FT +N +L
Sbjct: 750 TPLRARIKQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTEINEYL 809

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK RDLWDE MISDLKY DGS+  I+R+P +L+ I+ATAFEI+P WL+E+ASRRQKW
Sbjct: 810 VRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAASRRQKW 869

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST K   G LNAV
Sbjct: 870 IDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSK--TGSLNAV 927

Query: 927 PVTDPNSSTHSLGIPSSCTSDT---------------ECEVCQ 954
              D  SS  +L   ++  +D                ECE CQ
Sbjct: 928 S-ADGVSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969


>gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis EO147]
          Length = 953

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/905 (60%), Positives = 681/905 (75%), Gaps = 15/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R     +      A     + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAADVETSAAGGINVT 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  ++  AC GL D VS + ++SET KN+YDG+  + +  + I ++RT
Sbjct: 159 DNGVTRPLDMSALHALIVSACEGLGDAVSPEPIVSETVKNLYDGVPMTQVYDSAILAART 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A L
Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSMRYAEYFPQFLKRGVEAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP    
Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL  
Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDQEKLKR 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS  AVE A
Sbjct: 633 TVGVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASEAAVEFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ ++
Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 753 TLDWPVLRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+R+P DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPKWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930

Query: 923 LNAVP 927
           LNAVP
Sbjct: 931 LNAVP 935


>gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 994

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/904 (61%), Positives = 678/904 (75%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++++   T+  V  LL+   +
Sbjct: 41  KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE R+  RA Q+      P    L +  
Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC GL + V  + +L ET KN+Y+G+  + +  + I +SRT
Sbjct: 159 DGGISRPLDMAALRNVIVSACEGLGEAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y +YF ++IE G+ A L
Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIERGINAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L   L   RDF F YLGLQ LYDRYFLHIN +RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D++KL  
Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQPDGSVVLDHEKLKK 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ ALH+L +PYAS  AV+ A
Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R   L  + +S
Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930

Query: 923 LNAV 926
           LNAV
Sbjct: 931 LNAV 934


>gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei BCC215]
          Length = 952

 Score = 1145 bits (2963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + +HA  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYHAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 930 ALNAVP 935


>gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
 gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
          Length = 963

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/936 (58%), Positives = 695/936 (74%), Gaps = 14/936 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVTATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA  + +       P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVHAPAAEAVQAHPSIRIT 151

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  I+ EAC GL++V   ++  ET KN+YDG++ +D+ TAL+ ++RT
Sbjct: 152 LADGSFAPLDLGRLNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTART 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    YI +G++  L
Sbjct: 212 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYIAKGIEFEL 270

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  +  FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 271 LNPVLATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGL 330

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 331 AIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 390

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 391 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 450

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 451 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFSPSEVP 510

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK FE  YE YE  A   G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 511 DLHDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 570

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D  KL  T+ T
Sbjct: 571 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVNT 630

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AVE AD+SM
Sbjct: 631 AVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSM 690

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R +  + ++    L 
Sbjct: 691 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLD 750

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 751 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 809

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 810 LVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 869

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 870 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 927

Query: 926 VPVTDPNSST------HSLGIPSSCTSD-TECEVCQ 954
           V   +    +          +P +C  D  +CE CQ
Sbjct: 928 VSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens SBW25]
 gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens SBW25]
          Length = 964

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/937 (59%), Positives = 699/937 (74%), Gaps = 15/937 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKI 147
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++ ++  A  A P ++I
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRTPAEEAAVQAHPSIRI 151

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + DGT    +  RL  I+ EAC GL++V   ++  ET KN+YDG++ +D+ TAL+ ++R
Sbjct: 152 TLADGTFAPLDLGRLNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTAR 211

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    YI +G++  
Sbjct: 212 TLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYIAKGIEFE 270

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL+  +  FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMG
Sbjct: 271 LLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMG 330

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++E  KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+
Sbjct: 331 LAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAI 390

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 391 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 450

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV
Sbjct: 451 VCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEV 510

Query: 508 SDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            DLHDL GK FE  YE YE  +   G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDP
Sbjct: 511 PDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDP 570

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D  KL  T+ 
Sbjct: 571 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTAKLERTVN 630

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AVE AD+S
Sbjct: 631 TAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKS 690

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R +  + ++    L
Sbjct: 691 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNESL 750

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N 
Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQ
Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLN
Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLN 927

Query: 925 AVPVTDPNSST------HSLGIPSSCTSD-TECEVCQ 954
           AV   +    +          +P +C  D  +CE CQ
Sbjct: 928 AVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 964


>gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12D]
 gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 994

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/904 (61%), Positives = 678/904 (75%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++++   T+  V  LL+   +
Sbjct: 41  KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE R+  RA Q+      P    L +  
Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC GL D V  + +L ET KN+Y+G+  + +  + I +SRT
Sbjct: 159 DGGISRPLDMVALRNVIVSACEGLGDAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIKRGINAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L   L   RDF F YLGLQ LYDRYFLHIN +RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHINETRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D++KL  
Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKK 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ ALH+L +PYAS  AV+ A
Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASEAAVQFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R   L  + +S
Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930

Query: 923 LNAV 926
           LNAV
Sbjct: 931 LNAV 934


>gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 970

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 697/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++ ++      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-TEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVAESATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + DFDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLADFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           metallidurans CH34]
 gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           metallidurans CH34]
          Length = 979

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/906 (60%), Positives = 692/906 (76%), Gaps = 18/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++   +
Sbjct: 39  KLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--APKLKI 147
               HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA Q+++++ A +  A     
Sbjct: 99  GGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERA-QANAQAVARVQEAGVSFN 157

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I ++
Sbjct: 158 VTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 217

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G++A
Sbjct: 218 RTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGIEA 271

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL E +  +DL  L   L   RDF F YLGLQ LYDRYFLH++  RIEMPQAFFMRVAM
Sbjct: 272 ELLDEKLATYDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMRVAM 331

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL+E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ A
Sbjct: 332 GLALEEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEA 391

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 392 LKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 451

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP  
Sbjct: 452 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPAS 511

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDP
Sbjct: 512 CPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDP 571

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKL 621
           CNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+ KL
Sbjct: 572 CNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDHAKL 631

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  AV+
Sbjct: 632 QKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVK 691

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            AD SME + ++A  AS ELA+ERG YS+++GSLWD+G+ P DS+ LLAE R   L ++ 
Sbjct: 692 FADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLDVDL 751

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FT
Sbjct: 752 SSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 811

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E+A
Sbjct: 812 VVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAA 871

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST++   
Sbjct: 872 SRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQ--R 929

Query: 921 GKLNAV 926
           G LNAV
Sbjct: 930 GSLNAV 935


>gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 970

 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  TI  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS  +L E R +  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|296160507|ref|ZP_06843323.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
 gi|295889256|gb|EFG69058.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
          Length = 1001

 Score = 1144 bits (2959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/902 (60%), Positives = 679/902 (75%), Gaps = 19/902 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  R    H        P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E ACS L D VS+  +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQTEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LS+F FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKFGAEFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV+ A
Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVKFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LN 924
           LN
Sbjct: 927 LN 928


>gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei NCTC 13177]
          Length = 956

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/908 (60%), Positives = 687/908 (75%), Gaps = 17/908 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRTLDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVPVT 929
            LNAVP +
Sbjct: 930 ALNAVPTS 937


>gi|28868877|ref|NP_791496.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 970

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  TI  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS  +L E R +  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei K96243]
 gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei ATCC 23344]
 gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1710b]
 gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei SAVP1]
 gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10229]
 gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 668]
 gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10247]
 gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1106a]
 gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 9]
 gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813880|ref|YP_002898331.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei
           K96243]
 gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 23344]
 gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710b]
 gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei SAVP1]
 gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 668]
 gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106a]
 gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
          Length = 995

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/908 (60%), Positives = 687/908 (75%), Gaps = 17/908 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVPVT 929
            LNAVP +
Sbjct: 930 ALNAVPTS 937


>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha
           [Janthinobacterium sp. Marseille]
 gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium
           sp. Marseille]
          Length = 963

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/900 (60%), Positives = 681/900 (75%), Gaps = 14/900 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V  L++   +
Sbjct: 39  RIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTSNVVNALVRRQPA 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  +K   P+A   ++ +
Sbjct: 99  GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQQAAK---PVAETHQLHV 155

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            +DG     +  ++  ++  AC GL+  V ++ +L ET KN+YDG+   +L  + I ++R
Sbjct: 156 TEDGQRRPLDMNQVRDLINAACIGLEKHVDAEAILHETVKNLYDGVPVEELHKSAILAAR 215

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            L+EK+P Y+ VTAR L+  +R+EV         +    +    Y EYF ++I++G++A 
Sbjct: 216 ALMEKDPAYSTVTARLLMHTIRKEVFGL------EVAQADAPAQYLEYFPKFIKKGIEAE 269

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  L + L  ERD  F YLGLQ LYDRYFLHI  +RIEMPQAF+MRVAMG
Sbjct: 270 LLDAKLGQFDLKKLGDALVPERDLQFGYLGLQTLYDRYFLHIRDTRIEMPQAFYMRVAMG 329

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E  +E+RA+EFYNLLSSF FM STPTLFNSGT+  QLSSC+LTTV DDL GI+ A+
Sbjct: 330 LALNEINREERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAI 389

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 390 KENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGA 449

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP + 
Sbjct: 450 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDA 509

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD  GK FE AY  YE +A RGE+K+F+KI A+ LWRKML+MLFETGHPWITFKDPC
Sbjct: 510 PDLHDKVGKAFEAAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+N+ AH  + Q D+ KL  T+RT
Sbjct: 570 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNMPAHMKDGQLDHVKLQKTVRT 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ  LH++ IPYAS EAV+ AD SM
Sbjct: 630 AMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDCLHMMRIPYASDEAVQFADRSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E + ++A  AS ELA+ERG YSS++GSLWD+G+ P DS+ LL E R   L  + T  L W
Sbjct: 690 EAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDSLKLLQEERGGYLEADLTETLDW 749

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L++R+K  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FT +N +L
Sbjct: 750 TPLRERIKQFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYL 809

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWDE MISDLKY DGS+  I+RIP DL+ I++TAFE++P WL+E+ASRRQKW
Sbjct: 810 VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYSTAFEVEPKWLVEAASRRQKW 869

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST K   G LNAV
Sbjct: 870 IDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSK--TGALNAV 927


>gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 993

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/952 (58%), Positives = 703/952 (73%), Gaps = 36/952 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  LL+   +
Sbjct: 51  KIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALLRSRPN 110

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK----- 144
               HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ     ++  A +     
Sbjct: 111 GGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVAQESQSAGQATESG 170

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           +K+  D+G     +   L  ++E AC GL + + +  +++ET KN+YDG+  + +  + I
Sbjct: 171 IKVT-DNGVEKWLDMAALRTVIEAACEGLGNHIDATPIITETIKNLYDGVPMAQVYDSAI 229

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +SRTLIEK+P +++VTAR L+  +R+E+L       ++    +MQ  Y  YF +YI EG
Sbjct: 230 LASRTLIEKDPAFSQVTARILMHVIRKEILG------KEVLQGDMQSEYGTYFAKYINEG 283

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A LL   M +FDL  LA  L   RD  F YLGLQ LYDRYFLHI   RIEMPQAFFMR
Sbjct: 284 ISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMR 343

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T  PQLSSC+LTTV DDL GI
Sbjct: 344 VAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGI 403

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK
Sbjct: 404 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 463

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +N  WTLFS
Sbjct: 464 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMENGDWTLFS 523

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P    DLHD YGK FE AY  YE++ADRGE+K FR+I A  LWRKML MLFETGHPWITF
Sbjct: 524 PSNTPDLHDKYGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITF 583

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQ--FDY 618
           KDPCNIRSPQQH+GVVHSSNLCTEITLN++  E AVCNLGS+NL AH    AN +   D+
Sbjct: 584 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDANGKLVLDH 643

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL  T+RTA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH+  IPYAS E
Sbjct: 644 EKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASEE 703

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737
           AV+ AD SME + ++A  AS ELA+ERG YS++ GSLWD+G+ P DS+ LLA+ R   L 
Sbjct: 704 AVKFADSSMEAVCYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQERGGYLE 763

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +S + W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+VKSN+SG
Sbjct: 764 VDNSSTMDWSGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSG 823

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN +LV +LK R LWDE MI+DLKY DG++  I+RIP DL+ ++ATAFE++P WL+
Sbjct: 824 EFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVEPSWLV 883

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+ 
Sbjct: 884 EAASRRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTV- 942

Query: 918 GVDGKLNAVPV------TDPNSSTHSLGIPSS---CTSDT------ECEVCQ 954
              G+LN+V        TD  +++ + G+ +    CT         ECE CQ
Sbjct: 943 -ASGQLNSVSSGGGVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993


>gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 112]
          Length = 953

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 930 ALNAVP 935


>gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 14]
 gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 91]
 gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei B7210]
          Length = 954

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/906 (60%), Positives = 686/906 (75%), Gaps = 17/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL D VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGDAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 930 ALNAVP 935


>gi|298487944|ref|ZP_07005983.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 970

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei DM98]
          Length = 942

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/913 (59%), Positives = 688/913 (75%), Gaps = 17/913 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R   +     A  +P   I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERV-HAGEAEAAEASPAGGINV 157

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G   + +   L  ++  AC GL + VS + +++ET KN+YDG+  + +  + I ++R
Sbjct: 158 TDNGVTRALDLNALRALIVSACEGLGNAVSPEPIVAETVKNLYDGVPMTQVYDSSILAAR 217

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A 
Sbjct: 218 TMIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMTTRYAEYFPQFLKRGVEAE 271

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 272 LLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 331

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 332 LALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEAL 391

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 392 KDNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 451

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 452 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 511

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 512 PDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 571

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL 
Sbjct: 572 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLAKQADGSYALDEEKLK 631

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE 
Sbjct: 632 RTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASDEAVEF 691

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 692 ADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 751

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           + L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 752 ATLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 811

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 812 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAAS 871

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 872 RRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 929

Query: 922 KLNAVPVTDPNSS 934
            LNAVP +   S 
Sbjct: 930 ALNAVPTSGGTSG 942


>gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato K40]
 gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
          Length = 970

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAGRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGRAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  TI  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW QG+ P+DS  +L E R +  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 970

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 970

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 696/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE+YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEHYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           xenovorans LB400]
 gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 1001

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/902 (60%), Positives = 677/902 (75%), Gaps = 19/902 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R+  R    H        P L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQARG---HDDQIVANTPGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  I+E ACS L D VS+  +++ET KN+YDG+  S +  + I ++RT
Sbjct: 155 DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAETVKNLYDGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++I+ GV+A L
Sbjct: 215 MIEKDPAYSQVTARILLHTIRREIL------EEEVTQTEMGERYAEYFPQFIKRGVQAEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH +G RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDRYFLHHDGVRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LS+F FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTRRSQLSSCYLTTVDDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLKEQADGTLVLDHDKLKR 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAV  A
Sbjct: 629 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEEAVRFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELAQERG YSS++GSLWD+G+ P DS+ LLAE R   + ++ + 
Sbjct: 689 DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGILPQDSVKLLAEARGGYVEVDSSE 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + W EL+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 749 SMDWTELRSRIAQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DG++  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 926

Query: 923 LN 924
           LN
Sbjct: 927 LN 928


>gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae Cit 7]
          Length = 970

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 953

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/901 (60%), Positives = 684/901 (75%), Gaps = 8/901 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVAAGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 V 926
           V
Sbjct: 927 V 927


>gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira
           multiformis ATCC 25196]
 gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 956

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/960 (57%), Positives = 705/960 (73%), Gaps = 25/960 (2%)

Query: 11  DEDAFPSLA-YPFPEKIKG-------VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           D+   P++A Y F     G        ++I+RNG V  F+P+KIS A+ KAF+AVEG   
Sbjct: 6   DQTPRPAMAGYEFSSNPSGHDPRYSQYKIIRRNGSVAGFEPNKISIAMTKAFLAVEGSQG 65

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV++++  LTE  V  L++   S    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 66  AASARVREVVARLTEDVVNALMRRQPSGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 125

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181
           E+R+  RA Q  + +       L ++ +DG  +  ++ RL  ++   C GL + V   ++
Sbjct: 126 EDRARKRAQQKEAGAAEAAGSVLNVL-EDGRRVPLDTARLLALIGSCCEGLGEGVDPALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L  T K++YDG+   ++  ++I S+R L+EKEP Y+ VTAR LL  LR EVL       +
Sbjct: 185 LKATLKDLYDGVPMEEVRKSVILSARALLEKEPAYSYVTARLLLHSLRFEVLG------E 238

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    EM   Y EYF  +I+ G++A LL E +  FDL  LA  L  ERD  F YLGLQ L
Sbjct: 239 EIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQFDLPRLAQALHAERDLKFGYLGLQTL 298

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI   RIE+PQAFFMRVAMGLAL E ++E RA+EFY++LS+F FM STPTLFNS
Sbjct: 299 YDRYFLHIQERRIELPQAFFMRVAMGLALNEIDREARAIEFYHVLSNFDFMSSTPTLFNS 358

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR  QLSSC+LTTVPDDL GI+  ++ENA+LAKY+GGLGNDWT VR +G+HI GTNGKS
Sbjct: 359 GTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAKYAGGLGNDWTRVRAMGSHIKGTNGKS 418

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV +DTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 419 QGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNT 478

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFMKRV +   WTLFSP +V DLH+ YGK FE AY  YE +  RGE+ +++ I 
Sbjct: 479 ATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYGKAFEQAYLAYEDKVARGELDLYKTIP 538

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV LWRKML+MLFETGHPWITFKD CNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCN
Sbjct: 539 AVQLWRKMLSMLFETGHPWITFKDACNIRSPQNHIGVVHSSNLCTEITLNTNDQEIAVCN 598

Query: 602 LGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           LGSINL AH  +  + D DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+
Sbjct: 599 LGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDNVIDINFYAVAKARNSNLRHRPVGLGI 658

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ  LH + IPYAS EAVE AD +ME +++HA  AS ELA+ERG Y+S++GSLWD+G+
Sbjct: 659 MGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHAYWASTELAEERGRYASYRGSLWDRGI 718

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P D++ LL E R   +  +R+S L W+ L++R++  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 719 LPQDTLDLLQEERGGYIEADRSSTLDWEALRERIRNHGMRNSNCLAIAPTATISNIVGVS 778

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+P+++NLYVKSN+SG+FT+ N +LV++LK+  LWDE MISD+KY DG++G I+R+P 
Sbjct: 779 ASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKKLGLWDEVMISDIKYFDGALGKIDRVPT 838

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +L+K++ATAFE++P WLIE+A+RRQKWIDQ+QSLN+Y+   SGKKLD  Y+ AW+ GLKT
Sbjct: 839 ELRKLYATAFEVEPQWLIEAAARRQKWIDQSQSLNIYIASVSGKKLDETYKLAWVRGLKT 898

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-----DTECEVCQ 954
           TYYLRS  ATS EKST++   G LNAVP      +  +  +P++  S     D ECE CQ
Sbjct: 899 TYYLRSLGATSAEKSTVQA--GSLNAVPAEGSLPAMGAAAVPATDVSFCSVDDPECESCQ 956


>gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha JMP134]
 gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 979

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/905 (60%), Positives = 684/905 (75%), Gaps = 16/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++   S
Sbjct: 39  KIIRRNGAVVAFEPSKINVAMTKAFLAVNGGQGAASARVREIVEQLTQNVVRALVRSRPS 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
              +HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA+ S           ++  +
Sbjct: 99  GGAIHIEDVQDHVELALMRSGEHEVARSYVLYREKRAQERASASAQAVARVQESGIQFNV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D G     +   L  +++ AC+GL + VS++ +L ET KN+Y+G+  + +  + I ++R
Sbjct: 159 TDAGVTKPLDIVALHDLLDTACAGLGKAVSAEPILKETLKNLYEGVPMTQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIEK+P+Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G+ A 
Sbjct: 219 TLIEKDPDYSQVTARILLHTIRKEILGA------EVTQAEMTTRYAEYFPKFIARGIAAE 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMG
Sbjct: 273 LLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LALNEADREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP   
Sbjct: 453 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLA 622
           NIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+ KL 
Sbjct: 573 NIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHAKLQ 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  AV+ 
Sbjct: 633 KTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAAVKF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R   L ++ +
Sbjct: 693 ADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLEVDHS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 SSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E+AS
Sbjct: 813 VNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVS--RG 930

Query: 922 KLNAV 926
            LNAV
Sbjct: 931 SLNAV 935


>gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae 642]
          Length = 970

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMAELYAKALPAYVTAGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12J]
 gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12J]
          Length = 994

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/904 (60%), Positives = 679/904 (75%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++++   T+  V  LL+   +
Sbjct: 41  KIIRRNGAVVSFEPSKIAVAMTKAFLAVNGGQGAASARVRELVDQQTQNVVRALLRSRPN 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE R+  RA Q+      P    L +  
Sbjct: 101 GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQQPAFIGLNVT- 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC GL + V  + +L ET KN+Y+G+  + +  + I +SRT
Sbjct: 159 DGGITRPLDMAALRNVIVSACEGLGEAVDPEPILKETVKNLYEGVPMTQVYDSAILASRT 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 219 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMSTRYVDYFPQFIKRGINAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLAQFDLARLGAALDASRDFQFNYLGLQTLYDRYFLHISETRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 453 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKVGKAFEQAYLAYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D++KL  
Sbjct: 573 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSVVLDHEKLKK 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ ALH+L +PYAS  AV+ A
Sbjct: 633 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDALHVLRVPYASDAAVQFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLAE R   L  + +S
Sbjct: 693 DTSMEAVCYYAYWASTELAEERGRYSSYKGSLWDRGILPQDSLKLLAEERGGYLEADMSS 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 753 TMDWDSLRGRIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P+WL+E+ASR
Sbjct: 813 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPLWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 930

Query: 923 LNAV 926
           LNAV
Sbjct: 931 LNAV 934


>gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 970

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 695/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRT-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 970

 Score = 1141 bits (2952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTIN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 970

 Score = 1141 bits (2952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri A1501]
 gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501]
          Length = 961

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/953 (58%), Positives = 705/953 (73%), Gaps = 21/953 (2%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  L
Sbjct: 16  PDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARL 72

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE ++  R + S S
Sbjct: 73  TEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASGS 132

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
              A   P +++   DG+    +  RL+ I+ EAC GL +V   ++  ET KN+YDG++E
Sbjct: 133 SDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVAE 192

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L  +    + ATHHEM  LY + 
Sbjct: 193 KDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAKA 251

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
              YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ LYDRYF+H +  R E
Sbjct: 252 LPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFE 311

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTT
Sbjct: 312 LPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTT 371

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTA
Sbjct: 372 VPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTA 431

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV  
Sbjct: 432 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFD 491

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ + A  LWRKML+MLFE
Sbjct: 492 DGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFE 551

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  + +
Sbjct: 552 TGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGK 611

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+MGFQ AL+L HI Y 
Sbjct: 612 LDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYG 671

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A++ AD+SME IS+ AI AS +LA ERGAYSSF+GSLW +G+ P+DS  +L E R +
Sbjct: 672 SDAAIDFADKSMEAISYFAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQ 731

Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKS
Sbjct: 732 KYIDVDLSESLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKS 790

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE++ 
Sbjct: 791 NLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVET 850

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EK
Sbjct: 851 KWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEK 910

Query: 914 STLKGVDGKLNAVP-----------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           ST+    GKLNAV                 +      +P +C+ D  +CE CQ
Sbjct: 911 STIN--TGKLNAVSSGGSEAANSASAAPAAAEPKPAPVPLACSIDNPDCEACQ 961


>gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis MSMB43]
          Length = 956

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/907 (59%), Positives = 684/907 (75%), Gaps = 15/907 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQTVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R     + +    A     + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERVHAGEAAAVESSAAGGINVT 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G   + +   L  ++  AC GL D V+ + +++ET KN+YDG+  + +  + I ++RT
Sbjct: 159 DNGVTRALDLNALRALIVSACEGLGDAVNPEPIVAETVKNLYDGVPMTQVYDSSILAART 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y EYF ++++ GV+A L
Sbjct: 219 MIEKDPAYSQVTARVLLHTIRREILG------EEVTQAEMATRYAEYFPQFLKRGVEAEL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 DNALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKFGAEFEAAYVGYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D +KL  
Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGSVNLVAHLAKQADGTYALDEEKLKR 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  PYAS EAVE A
Sbjct: 633 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPYASGEAVEFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ ++
Sbjct: 693 DRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSA 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L+ R+ + GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 753 TLDWPALRARIDSFGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930

Query: 923 LNAVPVT 929
           LNAVP +
Sbjct: 931 LNAVPTS 937


>gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuG_Q212]
 gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuG_Q212]
          Length = 941

 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/929 (60%), Positives = 698/929 (75%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +VHIE IQD+VE +LM +G HK  R YVLYREER   R  Q  S+++  I     I 
Sbjct: 90  SGGVVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA 
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920

Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
            VT  N+       P++C   D +CE CQ
Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941


>gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium
           petroleiphilum PM1]
 gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 971

 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/960 (57%), Positives = 701/960 (73%), Gaps = 34/960 (3%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A P      G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++++  LT
Sbjct: 24  SRAAPGSSAYAGYQIIRRNGAVVAFEPNKIAVALMKAFLAVHGTQGAASASVREMVDGLT 83

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  V  LL+        HIED+QD VE  LM+ GHH+I R YVLYRE R+  RA Q    
Sbjct: 84  ESVVRALLRSRPGGGTFHIEDVQDAVELGLMRGGHHEIARAYVLYRERRAQERAKQGA-- 141

Query: 137 SDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLS 194
             AP+ P + + ++D G  +  ++ RL+ +VE AC+ L  +V +  +L+ET +N+YDG+ 
Sbjct: 142 --APVTPAVALHVIDRGQRVPLDTGRLQALVESACANLGSEVQAAPILAETQRNLYDGVP 199

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             ++  A I ++RTLIEK+P Y + TAR LL  +RRE+L        +  H EMQ  Y +
Sbjct: 200 IDEVYKAAILAARTLIEKDPAYTRATARLLLHTIRREILGG------EVLHEEMQQRYAD 253

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  +I++GV+A LL E +M +DL  L   LK +RD  F+YLGLQ LYDRYFLH+  +RI
Sbjct: 254 YFPGFIKQGVEAELLDERLMQYDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARI 313

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGTR  QLSSC+LT
Sbjct: 314 ELPQAFFMRVAMGLALNEVDREARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLT 373

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL GI+ A++ENA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDT
Sbjct: 374 TVADDLDGIYEAIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDT 433

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV 
Sbjct: 434 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVI 493

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +   WTLFSP    DLHD +G  FE AY  YE++ADRGE+K+++++ A  LWRKML+MLF
Sbjct: 494 EGGDWTLFSPSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLF 553

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H  + 
Sbjct: 554 ETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHG 613

Query: 615 ----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+ KL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ +L+ L
Sbjct: 614 AEGLEIDHAKLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQL 673

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I YAS +AVE AD SME + +HA  AS ELA+ERG YSS+KGSLWD+G+ PIDS+ LLA
Sbjct: 674 RIAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLA 733

Query: 731 EVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           E R   + ++R++ L WD L+ R++  GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL
Sbjct: 734 EQRGGYVDVDRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNL 793

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P++LK ++ATAF
Sbjct: 794 SVKSNLSGEFTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAF 853

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  AT
Sbjct: 854 EVEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGAT 913

Query: 910 SVEKSTLKGVDGKLNAVPVTDPN---------------SSTHSLGIPSSCTSDTECEVCQ 954
             EKST+K   G LNAV                     SS  +  +      D  CE CQ
Sbjct: 914 HAEKSTVKA--GHLNAVSSGSGGVDAVAAAAQAQFDAASSVPATDMKFCAIDDPTCEACQ 971


>gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 970

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/944 (58%), Positives = 694/944 (73%), Gaps = 23/944 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC  L +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACESLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLD 749

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +
Sbjct: 750 WAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPY 808

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQK
Sbjct: 809 LVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQK 868

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNA
Sbjct: 869 WIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNA 926

Query: 926 VPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           V          ++  P               +C  D  +CE CQ
Sbjct: 927 VSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 970


>gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 493]
 gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 331]
 gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           RSA 493]
 gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 331]
          Length = 941

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/929 (60%), Positives = 697/929 (75%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   VHIE IQD+VE +LM +G HK  R YVLYREER   R  Q  S+++  I     I 
Sbjct: 90  SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA 
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920

Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
            VT  N+       P++C   D +CE CQ
Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941


>gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri DSM 4166]
          Length = 960

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/913 (59%), Positives = 694/913 (76%), Gaps = 9/913 (0%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P LA   P +++   VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  L
Sbjct: 16  PDLAATAPGQLR---VIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARL 72

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE ++  R + S S
Sbjct: 73  TEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASGS 132

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
              A   P +++   DG+    +  RL+ I+ EAC GL +V   ++  ET KN+YDG++E
Sbjct: 133 SDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVAE 192

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L  +    + ATHHEM  LY + 
Sbjct: 193 KDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAKA 251

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
              YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ LYDRYF+H +  R E
Sbjct: 252 LPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRFE 311

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTT
Sbjct: 312 LPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTT 371

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTA
Sbjct: 372 VPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTA 431

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV  
Sbjct: 432 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFD 491

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ + A  LWRKML+MLFE
Sbjct: 492 DGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLFE 551

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  + +
Sbjct: 552 TGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDGK 611

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+MGFQ AL+L HI Y 
Sbjct: 612 LDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAYG 671

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A++ AD+SME IS++AI AS +LA ERGAYSSF+GSLW +G+ P+DS  +L E R +
Sbjct: 672 SDAAIDFADKSMEAISYYAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARGQ 731

Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKS
Sbjct: 732 KYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKS 790

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE++ 
Sbjct: 791 NLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVET 850

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EK
Sbjct: 851 KWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEK 910

Query: 914 STLKGVDGKLNAV 926
           ST+    GKLNAV
Sbjct: 911 STIN--TGKLNAV 921


>gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii Dugway 5J108-111]
 gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuK_Q154]
 gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuK_Q154]
          Length = 941

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/929 (60%), Positives = 697/929 (75%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   VHIE IQD+VE +LM +G HK  R YVLYREER   R  Q  S+++  I     I 
Sbjct: 90  SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAENTI----HIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIRS-KTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA 
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA- 920

Query: 927 PVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
            VT  N+       P++C   D +CE CQ
Sbjct: 921 -VTGQNN-------PNACAIDDPDCEACQ 941


>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas
           arsenicoxydans]
 gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Herminiimonas arsenicoxydans]
          Length = 966

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/941 (58%), Positives = 685/941 (72%), Gaps = 29/941 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++++RNG V  F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V  L++   +
Sbjct: 39  RILRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTTNVVNALMRRQPA 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  +K       +L +  
Sbjct: 99  GGTFHIEDIQDQVELALMRSGEHDVARAYVLYRFKRMEERAQQQAAKPVVETEHQLHVT- 157

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++G     +  ++  ++  AC GL+  V +  +L ET KN+YDG+   +L  + I ++R 
Sbjct: 158 ENGQRRPLDMNQVRDLITAACIGLEKHVDADAILRETVKNLYDGVPVEELHKSAILAARA 217

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EK+P Y+ VTAR L+  +R+EV        ++         Y  YF  +I++G+ A L
Sbjct: 218 LMEKDPAYSTVTARLLMHTIRKEVFG------REVAQANAPAEYLVYFAEFIKKGIAAEL 271

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   + +FDL  LA+ LK ERD  F YLGLQ LYDRYFLHI   RIEMPQAF+MRVAMGL
Sbjct: 272 LDAKLGEFDLKKLADALKPERDLQFGYLGLQTLYDRYFLHIADQRIEMPQAFYMRVAMGL 331

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  +E+RA+EFYNLLSSF FM STPTLFNSGT+  QLSSC+LTTV DDL GI+ A++
Sbjct: 332 ALNEANREERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLGGIYDAIK 391

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 392 ENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +  
Sbjct: 452 CAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAP 511

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +A RGE+K+F+KI A+ LWRKML+MLFETGHPWITFKDPCN
Sbjct: 512 DLHDKVGKAFEEAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPCN 571

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+N+ AH  + + D+ KL  TIRTA
Sbjct: 572 IRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNMPAHMKDGKLDHVKLQKTIRTA 631

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH++ IPYAS +AV+ AD SME
Sbjct: 632 MRMLDNVIDINYYAVNKARDSNLRHRPVGMGIMGFQDCLHMMRIPYASNDAVQFADNSME 691

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            + ++A  AS ELA+ERG YSS+KGSLWD+G+ P DS+ LLA+ R    L  + +    W
Sbjct: 692 AVCYYAYYASTELAEERGRYSSYKGSLWDRGILPQDSLKLLADERGAKYLEADYSETFDW 751

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FT +N +L
Sbjct: 752 TPLRARIKEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYL 811

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWDE MISDLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E+ASRRQKW
Sbjct: 812 VRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKW 871

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST K   G LNAV
Sbjct: 872 IDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSK--TGALNAV 929

Query: 927 PVTDPNSSTHSLGIPSSCTSD-------------TECEVCQ 954
                +    S    S+  +D              ECE CQ
Sbjct: 930 ----DSGGGSSTAAQSAAETDGPACILRPGDAGFEECEACQ 966


>gi|171463020|ref|YP_001797133.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 990

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/949 (58%), Positives = 696/949 (73%), Gaps = 33/949 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  LL+   +
Sbjct: 51  KIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALLRSRPN 110

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK----- 144
               HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ     +   A +     
Sbjct: 111 GGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVSQEVQTANQAGESG 170

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +K+  D+G     +   L  ++E AC GL   + +  +++ET KN+YDG+  + +  + I
Sbjct: 171 IKVT-DNGVEKWLDMAALRTVMEAACEGLGTHIDASPIVTETIKNLYDGVPMAQVYDSAI 229

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +SRTLIEK+P Y++VTAR L+  + +E+L       ++    +MQ  Y  YF +YI EG
Sbjct: 230 LASRTLIEKDPAYSQVTARILMHVIHKEILG------KEVLQGDMQAEYSTYFAKYINEG 283

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A LL   M +FDL  LA  L   RD  F YLGLQ LYDRYFLHI   RIEMPQAFFMR
Sbjct: 284 ISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEMPQAFFMR 343

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T  PQLSSC+LTTV DDL GI
Sbjct: 344 VAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTVEDDLDGI 403

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK
Sbjct: 404 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 463

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+T+NWIPDLFMKRV +N  WTLFS
Sbjct: 464 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMSTSNWIPDLFMKRVMENGEWTLFS 523

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P    DLH  +GK FE AY  YE++ADRGE+K FR+I A  LWRKML MLFETGHPWITF
Sbjct: 524 PSNTPDLHGKFGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFETGHPWITF 583

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQ--FDY 618
           KDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH    AN +   D+
Sbjct: 584 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNEDEIAVCNLGSVNLTAHMTTDANGKMILDH 643

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL  T+RTA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH+  IPYAS E
Sbjct: 644 EKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQRIPYASDE 703

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737
           AV+ AD SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA  R   L 
Sbjct: 704 AVKFADSSMEAVCYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALLAAERGGYLE 763

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +S + W+ L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+VKSN+SG
Sbjct: 764 VDSSSTMDWNGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLFVKSNLSG 823

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN +LV +LK R LWDE MI+DLKY DG++  I+RIP DL+ ++ATAFE+DP WL+
Sbjct: 824 EFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFEVDPTWLV 883

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+ 
Sbjct: 884 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTV- 942

Query: 918 GVDGKLNAVPV------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              G+LNAV        TD  ++         CT         ECE CQ
Sbjct: 943 -ASGQLNAVSSGGGVNGTDAAAAGGVEADGPVCTMRPGDAGFEECEACQ 990


>gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
 gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
          Length = 954

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/931 (58%), Positives = 697/931 (74%), Gaps = 15/931 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V +F+P KIS A+ KAF+AV+G   + S+RV++++ NLT+  V  LL+    
Sbjct: 33  RVIRRNGAVVTFEPGKISVALTKAFIAVDGGQGAASVRVREVVVNLTQDVVNALLRRQPD 92

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           +   HIEDIQDQVE +LM+SG H + R YVLYREER+  RA     KS A  A ++  +M
Sbjct: 93  SGTFHIEDIQDQVELALMRSGEHDVARAYVLYREERTRERARLKQ-KSTAETAAEVLYVM 151

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  +L  ++E +C+GL + V   ++L  T K++YDG+   ++  +LI S+R 
Sbjct: 152 DNGQRVPLDVAKLSALIETSCAGLGNAVDPALILKATLKDLYDGVPIDEVRKSLILSARV 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y+ VTAR LL+ +R EVL        + +   M+  Y EYF  +I+ G++A L
Sbjct: 212 LIEKDPAYSYVTARLLLDNVRYEVLGA------EVSQQAMKSHYQEYFPAFIKRGIEADL 265

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L+  L  +RD  F+YLGLQ LYDRYFLHI   RIE+PQAFFMRVAMGL
Sbjct: 266 LDQRLAQFDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQRIELPQAFFMRVAMGL 325

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 326 ALNEIDREARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVPDDLDGIYESIK 385

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+LAKY+GGLGNDWT VR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKGAV
Sbjct: 386 ENALLAKYAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAV 445

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH+D+EEFL+LRKNTGDDRRRTHDMNTA WIPDLFMKRV +   WTLFSP +V 
Sbjct: 446 CAYLECWHLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRVMEGGDWTLFSPSDVP 505

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLH+ +G++FE AY  YE + +RGE+++++KI AV LWRKML+MLFETGHPWITFKDPCN
Sbjct: 506 DLHEKFGQQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSMLFETGHPWITFKDPCN 565

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL+AH  +   D DKL  TI   
Sbjct: 566 VRSPQNHIGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKDGALDLDKLKRTIHVV 625

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L IPY SP AVE AD SME
Sbjct: 626 MRMLDNVIDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIPYGSPAAVEFADRSME 685

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            +++ A  AS ELAQERG YS++KGSLWD+G+ P D++ +L + R   +  + ++ L WD
Sbjct: 686 AVAYQAYWASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQERGGYVEADLSATLDWD 745

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++R+K  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FT+ N  LV
Sbjct: 746 ALRQRIKLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVKSNLSGEFTITNRSLV 805

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK+ +LWDE MISDLKY DG+I  I+RIPD+++ ++ATAFE+DP+WLIE+ +RRQKWI
Sbjct: 806 NDLKKLNLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMDPLWLIEAGARRQKWI 865

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLRS  AT+ EKST++   G LNAVP
Sbjct: 866 DQSQSLNIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAEKSTVRA--GSLNAVP 923

Query: 928 ----VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               +        ++ I      D  CE CQ
Sbjct: 924 ADGGIVKAAVEVSTVEIKYCAIDDESCESCQ 954


>gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
 gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
          Length = 993

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/905 (60%), Positives = 678/905 (74%), Gaps = 16/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V +F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 39  KVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   RA  S +  + P       + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERA-HSDAPVETPDGSSGLTVT 157

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     + K L  +V  AC GL   V+   +++ET KN+YDG+  S +  + I ++RT
Sbjct: 158 DKGVSRPLDMKALHGLVAAACEGLGSAVNPDPIVAETVKNLYDGVPLSQVYDSAILAART 217

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++    EMQ  Y EYF ++++ GV+A L
Sbjct: 218 MIEKDPAYSQVTARILLHTIRREILG------EEVAQGEMQARYAEYFPQFLKRGVEAEL 271

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDLV L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAF+MRVAMGL
Sbjct: 272 LDDKLLQFDLVRLGEALDASRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGL 331

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFYN+LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 332 ALNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 391

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 452 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTCP 511

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGE+K+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 512 DLHDKFGAEFEAAYLGYEEKVARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCN 571

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH A         D+DKL  
Sbjct: 572 IRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLAKQADGSYALDHDKLKR 631

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  P++S  AVE A
Sbjct: 632 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDTAVEFA 691

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS+ GSLWD+G+ P D++ LL E R   + ++ + 
Sbjct: 692 DRSMEAVCYYAYWASTELAEERGRYSSYTGSLWDRGILPQDTLKLLEEARGGYVEVDMSE 751

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+VKSN+SG+FTVV
Sbjct: 752 SLDWTSLRGRISVHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVV 811

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 812 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEAASR 871

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+++   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 872 RQKWIDQAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 929

Query: 923 LNAVP 927
           LNAVP
Sbjct: 930 LNAVP 934


>gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ubonensis Bu]
          Length = 990

 Score = 1137 bits (2940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/909 (59%), Positives = 678/909 (74%), Gaps = 20/909 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R    H+  +AP       + 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLER---QHAGEEAPAVESAGGIN 155

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +D+G     +   L  ++  AC GL   V+   +++ET KN+YDG+  S +  + I ++
Sbjct: 156 VVDNGVTRPLDLNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAA 215

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RT+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A
Sbjct: 216 RTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDA 269

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH++GSRIEMPQAFFMRVAM
Sbjct: 270 GLLDDKLLQFDLKRLGDALDANRDLQFGYLGLQTLYDRYFLHVDGSRIEMPQAFFMRVAM 329

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ A
Sbjct: 330 GLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEA 389

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 390 LKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 449

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP  
Sbjct: 450 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPST 509

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDP
Sbjct: 510 CPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 569

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621
           CN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL
Sbjct: 570 CNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKL 629

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE
Sbjct: 630 KRTVSVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQAAVE 689

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ 
Sbjct: 690 FADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDT 749

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +  L W EL+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FT
Sbjct: 750 SESLDWSELRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 809

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M++DLKY DG +  I+R+P DL+ I+ATAFE+DP WL+E+A
Sbjct: 810 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRVPADLRAIYATAFEVDPTWLVEAA 869

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    
Sbjct: 870 SRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 927

Query: 921 GKLNAVPVT 929
           G LNAVP +
Sbjct: 928 GALNAVPTS 936


>gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 971

 Score = 1137 bits (2940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/945 (58%), Positives = 695/945 (73%), Gaps = 24/945 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EEGVKAR 267
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+   G+K  
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTPAGIKFE 269

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMG
Sbjct: 270 LLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMG 329

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+
Sbjct: 330 LAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAI 389

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 390 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 449

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV
Sbjct: 450 VCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEV 509

Query: 508 SDLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDP
Sbjct: 510 PDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDP 569

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+ 
Sbjct: 570 CNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVD 629

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD S
Sbjct: 630 VAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTS 689

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L
Sbjct: 690 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETL 749

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQ
Sbjct: 809 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLN
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLN 926

Query: 925 AVPVTDPNSSTHSLGIP--------------SSCTSD-TECEVCQ 954
           AV          ++  P               +C  D  +CE CQ
Sbjct: 927 AVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 971


>gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
 gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
          Length = 987

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/903 (60%), Positives = 676/903 (74%), Gaps = 17/903 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE R+  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERA-QAGETQQPPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+GL + V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGEAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++VTAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQVTARILLHTIRREILG------EEVTQAEMAARYADYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  L   L   RD  F YLGLQ L+DRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDEKLAQFDLAKLGAALDASRDLQFNYLGLQTLFDRYFLHISEKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDRESRAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGKAFETAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVTQADGSVALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYAS  AV+ A
Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYASDAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R   L  + +S
Sbjct: 689 DNSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 SMDWDSLRARIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNA 925
           LNA
Sbjct: 927 LNA 929


>gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           sp. 301]
 gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           sp. 301]
          Length = 938

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/933 (60%), Positives = 692/933 (74%), Gaps = 18/933 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVI+RNG    F   KIS AI KAF+AVEG  +  S RV+D +  L++     L++   
Sbjct: 17  LQVIRRNGAAVQFTLDKISIAITKAFLAVEGNQSGASQRVRDQVATLSQLVNNALMRRLP 76

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  RAA+  S     ++  L + 
Sbjct: 77  AGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKASHPTTELSHTLNVN 136

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D G LI  + K+L  +V EAC  L DV +  IV+ +  +++YDG+  +++  ALI S+R
Sbjct: 137 ID-GKLIPLDIKQLNEMVGEACLNLGDVVNPSIVVEQAVRDLYDGIPFTEVYKALILSAR 195

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +LIE EP Y  VTAR  L+ +R EVL       ++ +H +M   Y EYF RYI+ G+ A 
Sbjct: 196 SLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAQMDEHYAEYFPRYIKMGINAE 249

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  LA  L  +RDF F YLG+Q LYDRYFLHI   RIE+PQ FFMRVAMG
Sbjct: 250 LLDSRLAQFDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMRVAMG 309

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E ++E RA+EFYN+LSSF FM STPTLFN+GT H QLSSC+LTTV DDL GI+  +
Sbjct: 310 LAINEIDRESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGIYQGI 369

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENAML KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGKRKGA
Sbjct: 370 KENAMLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGKRKGA 429

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+   WTLFSP +V
Sbjct: 430 VCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEAGDWTLFSPSDV 489

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD YGK FE AY  YER+A+ GEIK+F+KI A+ +WRKML+MLFETGHPWITFKDPC
Sbjct: 490 PDLHDKYGKAFETAYVEYERRAENGEIKLFKKIPALQMWRKMLSMLFETGHPWITFKDPC 549

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLAS 623
           NIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL H A        D DKL +
Sbjct: 550 NIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQHLAEVNGKLVLDNDKLQA 609

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI+  +R+LDNV+DIN + + KA+ +N  HR +G+G+MGFQ+ LH + IPYAS EAVE A
Sbjct: 610 TIKIGMRMLDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNCLHAMRIPYASMEAVEFA 669

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742
           D +ME + ++A  AS  LA+ER AYSSFKGSLWDQG+ P+D++ LL   R   + ++R+ 
Sbjct: 670 DRAMEMVCYNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTLDLLLNERGGNVEVDRSK 729

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+FT+V
Sbjct: 730 TLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGEFTIV 789

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +LK R LWD  M+SDLKY DGS+  I+R+P DLK+++ATAF++DP WLIE+A+R
Sbjct: 790 NEQLVIDLKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLYATAFDVDPTWLIEAAAR 849

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYLRS  AT+ EKST  G  G+
Sbjct: 850 RQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSMGATAAEKST--GSGGE 907

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           LNAV      +    L  P  C+ D  ECE CQ
Sbjct: 908 LNAVSAGLEEAPKEYL--PKVCSIDNPECESCQ 938


>gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha
           [Chromohalobacter salexigens DSM 3043]
 gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 976

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/906 (60%), Positives = 676/906 (74%), Gaps = 10/906 (1%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P++++   VIKR G V +FD SKIS AI KAF+A EG  A+ S R+++ +   T+  V  
Sbjct: 17  PQRLR---VIKRGGEVAAFDGSKISVAITKAFIATEGDNAAASSRIREFVSEATQSIVDT 73

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
            L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  RA Q      A   
Sbjct: 74  FLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHA--RARQPQGADIAKPH 131

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P L +   DGT+   +  R+E +V +AC GL +V  + ++  + KN+YDG+    + TAL
Sbjct: 132 PSLNVTQADGTVRPLDLGRVETLVADACEGLANVEPQKIVDASLKNLYDGVPIDGVATAL 191

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + ++RTL+EKEPNY   TAR L + LRRE L+ +     +AT+ EM  LY   F  YI++
Sbjct: 192 MMTARTLVEKEPNYTYATARLLQDNLRREALSFL-GIADEATYQEMATLYAPAFKAYIDK 250

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G++   L E + +FDL  L   L + RD  F YLGLQ LYDRYFLH +  R E+PQ  FM
Sbjct: 251 GIEFEQLDERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHDDVRYELPQVMFM 310

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLAL E + E RA+EFY LLSSF +M STPTLFN+GT+  QLSSC+LTTVPD L G
Sbjct: 311 RVAMGLALNEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSSCYLTTVPDQLDG 370

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGG
Sbjct: 371 IYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG 430

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV  +  WTLF
Sbjct: 431 KRKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDEEWTLF 490

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP    DLHDLYG  FE  Y  YE     G++K+F+++ A  LWRKML+MLFETGHPWIT
Sbjct: 491 SPSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKMLSMLFETGHPWIT 550

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCN+RSPQ H GVVHSSNLCTEITLN+S++E AVCNLGS+NL  H  + Q D DKL 
Sbjct: 551 FKDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQHIVDGQLDGDKLK 610

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T++TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L I YAS +AV  
Sbjct: 611 KTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQLGIAYASDDAVTF 670

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNR 740
           AD SME IS+HAI AS +LA ERG Y SF+GSLW +GV PIDSI  LAE R  D + ++ 
Sbjct: 671 ADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLAEERGADYIEVDT 730

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++   W  L+ +V   GMRNSN MAIAPTATI+NICGV+QSI+P+YQNL+VKSN+SG+FT
Sbjct: 731 STTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLFVKSNLSGEFT 790

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN+++VN+LK R LWDE MI+DLKY+DGS+  I+RIPDDLK  +A+AFE++P WL+E+A
Sbjct: 791 VVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFEVEPKWLVEAA 850

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           +RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  ATSVEKST+    
Sbjct: 851 ARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEKSTVD--R 908

Query: 921 GKLNAV 926
           GKLNAV
Sbjct: 909 GKLNAV 914


>gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia
           sp. P1]
          Length = 927

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/911 (60%), Positives = 678/911 (74%), Gaps = 21/911 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VI+R+G  TSFD SKIS A+ KAF+AVEG   + S R+  +++ LT Q V  L +H  
Sbjct: 19  LRVIRRDGSETSFDASKISVAMTKAFLAVEGGAGASSSRLHPLVQELTGQVVAALHRHPT 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKI 147
              +V +E IQDQVE +LM+  HHK+ R YVLYRE+++  RA    S  DA  A   + +
Sbjct: 79  P--VVQVEQIQDQVELALMRGEHHKVARSYVLYREQQAQARA----SGPDAGGASATIHV 132

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
              DGT    +  R+E ++ EA  G+ DV +  VL+E  + +YDG++  +L  AL+ ++R
Sbjct: 133 TGPDGTRAPLDRDRVETVLAEALDGIDDVEAAPVLAELDRTVYDGITADELSQALVMAAR 192

Query: 208 TLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           TL+E+EP+Y+ V +R L+++LR E    L+   + P +AT   M   Y  Y   Y+   +
Sbjct: 193 TLVEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQAT---MARDYASYTKDYLRHAI 249

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L+   +  FDL  +   L  ERD    +LGLQ LYDRYFLH +G+R E+PQAFF+RV
Sbjct: 250 AIGLVDAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYFLHEHGTRFELPQAFFLRV 309

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLA++E ++E RA+EFY LLSSF FM STPTLFNSGT  PQLSSCFLTTV DDL  IF
Sbjct: 310 AMGLAVREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRPQLSSCFLTTVDDDLDSIF 369

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
           G  + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG SQGV+PFLK+A DTAVAVNQGGKR
Sbjct: 370 GGYRNNALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVPFLKIAGDTAVAVNQGGKR 429

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV  +  WTLFSP
Sbjct: 430 KGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADTTWTLFSP 489

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV DLHDLYG EF   Y  YE  A+RGE++V R + AV LWR+MLTMLFETGHPW+TFK
Sbjct: 490 DEVPDLHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLWRRMLTMLFETGHPWVTFK 549

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLGSINLLAHFANNQFDY 618
           DPCN+RSPQQH GVVHSSNLCTEITLN+ +       E AVCNLGS+NL AH   +  D 
Sbjct: 550 DPCNLRSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVCNLGSVNLAAHVTRDGLDA 609

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           DKL  T+ TAVR+LDNV+DIN +TI +A++SN  HR +GLG+MGF  AL L  I   S  
Sbjct: 610 DKLRRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGMMGFSDALFLQRIAPGSEA 669

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DEL 736
           AV  AD S E +S+HAI+AS +LA ERG Y+SF+GSLW +GV PIDS+ LLA+ R   EL
Sbjct: 670 AVGFADVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGVLPIDSLDLLADARGEGEL 729

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++R+S L W  L++ V+T GMRNSN +AIAPTATI+NICGV QSI+P + NLYVKSNMS
Sbjct: 730 EIDRSSTLDWASLRETVRTQGMRNSNVLAIAPTATISNICGVGQSIEPIHLNLYVKSNMS 789

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDFTVVN  LV +LK+R LWDE M+SDLKY DGS+  I+R+P DLK+++ATAFEI+P WL
Sbjct: 790 GDFTVVNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVPGDLKELYATAFEIEPRWL 849

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+ASRRQKW+DQAQSLNLYL  PSG+KLD +YR AW  GLKTTYYLR+R+ATSVEKSTL
Sbjct: 850 VEAASRRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLKTTYYLRTRAATSVEKSTL 909

Query: 917 KGVDGKLNAVP 927
           KG DG+L  VP
Sbjct: 910 KGTDGRLTGVP 920


>gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
 gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
          Length = 944

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/934 (58%), Positives = 689/934 (73%), Gaps = 26/934 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V++RNG V  F+P+KIS A+ KAF+AV G  A+ S RV++++  LT+  V  L++    
Sbjct: 28  KVVRRNGSVVVFEPAKISVALTKAFIAVSGGPAAASARVRELVDQLTQGVVIALMRRQPH 87

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              +HIEDIQDQVE  LM+SG H + R YVLYREE S  RA Q+  +  A +   + +  
Sbjct: 88  GGTLHIEDIQDQVELGLMRSGEHDVARAYVLYREEHSRSRA-QTQVQQPAHV---INVTG 143

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            DG +   +  RL ++V+ AC GL +V  +++VL    K+MYDG+   ++   LI S+R+
Sbjct: 144 KDGVVQPLDLARLSVLVQSACEGLGEVVDAELVLQVALKDMYDGVPLHEVHKCLILSARS 203

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEKEP Y  VTAR LL  +  EVL       +     +M   Y +YF ++I+ G+ A L
Sbjct: 204 MIEKEPAYNFVTARLLLNNICSEVLG------EDVAPADMATRYADYFPKFIKRGIAAEL 257

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  LA +L   RD  F YLGLQ LYDRYFLHI G+RIE PQ FFMRVAMGL
Sbjct: 258 LDEKLAGFDLPRLAAELDASRDLQFGYLGLQTLYDRYFLHIGGTRIEAPQVFFMRVAMGL 317

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY LLS F FMCSTPTLFNSG+R  QLSSC+L+TV D+L GI+ A++
Sbjct: 318 ALNEIDREARAIEFYRLLSGFDFMCSTPTLFNSGSRRSQLSSCYLSTVEDNLEGIYDAIK 377

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+LAK++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 378 DNALLAKFAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 437

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT+NWIPDLFMKRV +   WTLFSP +V 
Sbjct: 438 CAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGNWTLFSPSDVK 497

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G +FEIAY  YE +A  G+IK+++ + A +LWRKMLTMLFETGHPWITFKDPCN
Sbjct: 498 DLHDLFGIDFEIAYTAYEEKAAAGQIKLYKTVQAASLWRKMLTMLFETGHPWITFKDPCN 557

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLA 622
           IRSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL AH          Q D+ KL 
Sbjct: 558 IRSPQQHVGVVHSSNLCTEITLNTNADEIAVCNLGSVNLPAHLYPEGHDLAGQIDHAKLR 617

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH L +PY+S EAVE 
Sbjct: 618 RTINTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHQLRLPYSSMEAVEF 677

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG Y+S+KGSLWD G+ P D++ LL E R   + ++ +
Sbjct: 678 ADRSMEAVCYYAYWASTELAEERGRYASYKGSLWDCGILPQDTLDLLREERGGYVEVDTS 737

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             + WD L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P+YQNL+VKSN+SG+FTV
Sbjct: 738 VSMDWDALRARIGQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLFVKSNLSGEFTV 797

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N  LV ELK+  LWDE MISDLKY DGS+  I+RIP +L+ ++ATAFE++P WLIE+AS
Sbjct: 798 INDHLVAELKRLGLWDEVMISDLKYFDGSLAKIDRIPAELRSLYATAFEVEPSWLIEAAS 857

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SG+KLD  Y+ AW+ GLKTTYYLR+  ATS EKST  G  G
Sbjct: 858 RRQKWIDQAQSLNIYMAGVSGRKLDDTYKLAWVRGLKTTYYLRTLGATSAEKST--GRAG 915

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
            LNAV V D  + T        C+ D  ECE CQ
Sbjct: 916 ALNAVSVGDAPAETTQF-----CSIDNPECEACQ 944


>gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium
           vinosum DSM 180]
 gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium
           vinosum DSM 180]
          Length = 985

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/945 (59%), Positives = 703/945 (74%), Gaps = 20/945 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VQVI+RNG +T FDPSKI  A+ KAF+AVEG  A  S R+ D +  LTEQ V  L +   
Sbjct: 42  VQVIRRNGQITHFDPSKIMVAMTKAFLAVEGDSAGASSRIHDRVAELTEQVVGALTRRLS 101

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP-KLKI 147
               VHIEDIQDQVE +LM++G H+I R+YVLYRE R+  RAA+S +++ A   P  + +
Sbjct: 102 GGGTVHIEDIQDQVELALMRAGEHRIARDYVLYREARARERAARSAAETAAIREPHPINV 161

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + DG+    +   +  ++EE+C  L  V    +LS+T +N++DG+ E+D+  AL+ S+R
Sbjct: 162 TLADGSTRPLDVAHMARLLEESCRDLDAVDPNAILSDTLRNLFDGVREADVRQALVMSAR 221

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIE+EP Y++  AR LL+ LRRE L  +       T  +M   Y +YF  YI+      
Sbjct: 222 TLIEREPQYSQAAARLLLDILRREALGFLDLAVGVETQADMAERYGDYFAAYIKRAADLE 281

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            L   +  +DL  L   LK ERD  F YLGLQ LYDRYF+H  +G R E+PQAFFMRVAM
Sbjct: 282 HLDGQLARYDLKRLGAALKPERDLQFTYLGLQTLYDRYFIHTADGIRFELPQAFFMRVAM 341

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLA+ E E+E+RA+EFY LLSSF FMCSTPTLFNSG+  PQLSSCFLTTVPDDL GI+ A
Sbjct: 342 GLAINEIEREERAIEFYELLSSFDFMCSTPTLFNSGSPRPQLSSCFLTTVPDDLDGIYSA 401

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGVIPFLKVANDTA+AVNQGG+R+G
Sbjct: 402 IKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVIPFLKVANDTAIAVNQGGRRRG 461

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV ++  WTLFSPDE
Sbjct: 462 AVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGHWTLFSPDE 521

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDL G+ FE AY  YE +A RGE+K+ +++ AV LWRKML MLFETGHPWI FKDP
Sbjct: 522 TPDLHDLTGQAFEQAYVAYEERAARGELKISKRLKAVDLWRKMLAMLFETGHPWIAFKDP 581

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CN+R   QHVGVVHSSNLCTEITL+++  E AVCNLGSINL AH  +   D  +L  T+R
Sbjct: 582 CNLRYTNQHVGVVHSSNLCTEITLHTNDLEAAVCNLGSINLAAHITDKGLDTQRLRRTVR 641

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVID N + + +A+ SN  HR +GLGLMGFQ AL+ L IPYAS EAV  AD+S
Sbjct: 642 TAMRMLDNVIDYNFYNVPQARASNLRHRPVGLGLMGFQDALYRLRIPYASQEAVAFADQS 701

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
            E++S++AI AS +LA ERG Y SF+GSLW QGV PIDSIGL+ + R   L M+ +  L 
Sbjct: 702 TEYLSYYAIEASADLAAERGRYPSFEGSLWSQGVLPIDSIGLMEQGRGGYLQMDTSHTLD 761

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L++R++T+GMRNSNC+AIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN +
Sbjct: 762 WDRLRERIQTVGMRNSNCLAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVVNPY 821

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK+R LWD  M++DLKY+DGS+  I+RIPD+LK+++ATAFEIDP WL+E+ASRRQK
Sbjct: 822 LVADLKERGLWDAVMVNDLKYYDGSLLPIDRIPDELKELYATAFEIDPRWLVEAASRRQK 881

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           W+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT VEKST+    G+ N 
Sbjct: 882 WLDQAQSLNLYMQEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATHVEKSTMADT-GRANR 940

Query: 926 VPVTDPNSSTHSLGIPS---------------SCTS-DTECEVCQ 954
           +     N        PS               +C+  D +CE CQ
Sbjct: 941 LSAVGGNYLGRQTAKPSDTTDDTPAAATATPSACSILDPDCEACQ 985


>gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 967

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/957 (56%), Positives = 698/957 (72%), Gaps = 32/957 (3%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           A P    +   Q+I+RNG V +F+PSKI+ A+MKAF+AV G   + S  V++ +  LT+ 
Sbjct: 22  ATPASGALANYQIIRRNGSVVAFEPSKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQA 81

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V  L++   S    HIED+QDQVE  LM+ GHH+I R YVLYRE+ +  RA Q  +++ 
Sbjct: 82  VVRALMRSRPSGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKHNQERARQLQAQT- 140

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESD 197
            P  P+L +M D G  ++ + + L+ ++E +C+ L  DV    ++SET +N+YDG+   +
Sbjct: 141 -PALPQLHVM-DGGKRVALDLRNLQALIEASCANLGTDVKPDPIVSETMRNLYDGVPIEE 198

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  A I ++RTLIEK+P+Y   TAR LL  +R+EVL       ++ +H  M   Y  YF 
Sbjct: 199 VYKASILAARTLIEKDPDYTYATARLLLHTIRKEVLD------EEISHEAMAVRYVTYFP 252

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            +I +G+K  LL E +  FDL  L   LK ERD  F+YLGLQ L+DRYFLHI   RIE+P
Sbjct: 253 EFIAKGIKNELLDEKLQQFDLARLGAALKPERDLQFDYLGLQTLFDRYFLHIRKQRIELP 312

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMGL+L ET++E RA+EFY +LSSF FM STPTLFN+GT   QLSSC+LTTV 
Sbjct: 313 QAFFMRVAMGLSLNETDREARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVA 372

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+ A++ENA+L+K++GGLGNDWTPVR +GAHI GTNG+SQGV+PFLKV NDTAVA
Sbjct: 373 DDLGGIYDAIKENALLSKFAGGLGNDWTPVRAMGAHIKGTNGESQGVVPFLKVVNDTAVA 432

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFM+RV +  
Sbjct: 433 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMRRVMEKG 492

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP +  DLHD +G++FE AY  YE +A+RGE+K  RK+ A  +WRKML+MLFETG
Sbjct: 493 SWTLFSPSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATDMWRKMLSMLFETG 552

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           HPWITFKD CNIRSPQQH GVVHSSNLCTEITLN+S+ ETAVCNLGSINL+ H  +   D
Sbjct: 553 HPWITFKDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGSINLVQHLKDGALD 612

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +DKL  TI TA+R+LDNVIDIN + +EKA+ SN  HR +GLGLMGFQ  L+ L +PYAS 
Sbjct: 613 HDKLKKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQDCLYELRVPYASQ 672

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-L 736
            AVE AD SME I +HA  AS ELA+ERG Y S+KGSLWDQG+ P+D++ +LA+ R   +
Sbjct: 673 AAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLDTLDMLAKERGGYV 732

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++R++ L WD L++++ T GMRNSNC+AIAPTATI+NI GV   I+P + NL VKSN+S
Sbjct: 733 EVDRSATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLS 792

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P+D+K ++ATAFEI+  WL
Sbjct: 793 GEFTVINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALYATAFEIETSWL 852

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+ SRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT  EKST+
Sbjct: 853 VEAGSRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHAEKSTV 912

Query: 917 KGVDGKLNAVPVTDPN-------------------SSTHSLGIPSSCTSDTECEVCQ 954
           +   GK+N+V                         S+T +  I      D  CE CQ
Sbjct: 913 QA--GKMNSVSSAPAAAMLGMSAIDKAAAAAQAQMSATPATDIKFCAIDDPGCEACQ 967


>gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
 gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
          Length = 969

 Score = 1132 bits (2929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/935 (57%), Positives = 696/935 (74%), Gaps = 23/935 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S R++++++ +T   V  L++   S
Sbjct: 31  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARIRELVEQMTGSVVNALVRRQPS 90

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIEDIQDQVE +LM+SG  ++ R YVLYRE R+  RAA+   +++         +M
Sbjct: 91  GGIFHIEDIQDQVELALMRSGEAEVARAYVLYRERRAQERAAKQVEQAEQHALN----VM 146

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           D       + + L+ ++E A  GL ++    +  ET KN+YDG+   ++  + I +SR +
Sbjct: 147 DGDIKRPLDVEALKALIESAAVGLNEIDVAHLQKETLKNLYDGVKIDEVFKSAILASRAM 206

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE EP+Y  VT+R LL  +RRE++       ++    EM  +YPEYF ++I++G+ A LL
Sbjct: 207 IENEPSYTLVTSRLLLHTIRREIIG------REIAQDEMAQVYPEYFPQFIKKGIAAGLL 260

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  FD+  L   LKYERD  F+YLGLQ LYDRYFLH+ G+RIEMPQAF+MRVAMGLA
Sbjct: 261 DNRLAQFDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEGTRIEMPQAFYMRVAMGLA 320

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L E ++E RA+EFY +LS+F FM STPTLFNSGT   QLSSC+LTT+ DDL  I+  ++E
Sbjct: 321 LNEVDREARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSCYLTTIGDDLDDIYEGIKE 380

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVC
Sbjct: 381 NALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC 440

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +  D
Sbjct: 441 AYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGNWTLFSPSDCPD 500

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHDLYGK FE AY  YE +A RG++K+F+ + A  LWRK+L+MLFETGHPWITFKDPCNI
Sbjct: 501 LHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILSMLFETGHPWITFKDPCNI 560

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ---FDYDKLAST 624
           RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H   A+N     D++KL  T
Sbjct: 561 RSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHLKPADNGELVLDHEKLQKT 620

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ ALH++  PYAS +AVE AD
Sbjct: 621 VGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDALHMMRKPYASRDAVEFAD 680

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
           ESME I ++A  AS ELA ERGAYS+FKGSLWD+G+ P+DS+ LL E R   + ++ +SR
Sbjct: 681 ESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSLKLLEEERGGYVEVDTSSR 740

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           + WD L+ R+K  GMRNSNC+AIAPTATI+NI GV+ SI+P++QNLYVKSN+SG+FT+VN
Sbjct: 741 MDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPTFQNLYVKSNLSGEFTIVN 800

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             LV +LK+  +WDE MISDLKY DGS+  I+RIP+DLK+++ATAFE+DP WL+E+A+RR
Sbjct: 801 EHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLYATAFEMDPRWLVEAAARR 860

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQ QSLN+Y+   SGK+LD  Y+ AW+ GLKTTYYLR+  AT  EKSTL G  G+L
Sbjct: 861 QKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRTIGATHAEKSTLAG--GEL 918

Query: 924 NAVPVTDPNSSTHSLG-----IPSSCTSDTECEVC 953
           N+V      S+  +       +P+    + E +VC
Sbjct: 919 NSVNAEGGASAAFTSAPATGLVPNLPEQEIEGKVC 953


>gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia
           solanacearum CFBP2957]
 gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 987

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/903 (60%), Positives = 676/903 (74%), Gaps = 17/903 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE RS  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+GL D V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGDTVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L +++  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  G+ FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYA+  AV+ A
Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R   L  + +S
Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLETDLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNA 925
           LNA
Sbjct: 927 LNA 929


>gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
 gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
          Length = 995

 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%)

Query: 10  GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           G E   P+LA   P+      +VI+RNG V +F+PSKI+ A+ KAF+AV G   + S RV
Sbjct: 21  GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 77

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           ++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R   
Sbjct: 78  RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 137

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187
           R       +          ++D+G     +   L  ++  AC GL   V+   +++ET K
Sbjct: 138 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACEGLGAAVNPDPIVAETVK 197

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++    +
Sbjct: 198 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 251

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFL
Sbjct: 252 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 311

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   Q
Sbjct: 312 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 371

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF
Sbjct: 372 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 431

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 432 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 491

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWR
Sbjct: 492 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 551

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL
Sbjct: 552 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 611

Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MG
Sbjct: 612 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 671

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P
Sbjct: 672 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 731

Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  
Sbjct: 732 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 791

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL
Sbjct: 792 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 851

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTY
Sbjct: 852 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 911

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           YLR+ +AT VEKST+    G LNAVP +
Sbjct: 912 YLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           solanacearum GMI1000]
 gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 987

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/904 (60%), Positives = 677/904 (74%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE RS  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+GL + V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMAALRNLIVSACAGLGESVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAGRYADYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L +++  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GK FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGKAFEAAYLGYEDKVARGEIKLFKKMPALQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYA+  AV+ A
Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALHVLRIPYATDAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+GV P DS+ LLA+ R   L  + +S
Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGGYLEADLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L++R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 TMDWDGLRERIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           glumae BGR1]
 gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           glumae BGR1]
          Length = 999

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/905 (59%), Positives = 680/905 (75%), Gaps = 16/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V +F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  L++   +
Sbjct: 39  KVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTQSVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   RA           A  + +  
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERAHSDAPADAPAGAAGINVT- 157

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC GL   V+   +++ET KN+YDG+  S +  + I ++RT
Sbjct: 158 DAGVTRPLDMGALRGLIASACEGLGSAVNPDPIVAETVKNLYDGVPMSQVYDSAILAART 217

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++ +  EMQ  Y EYF ++++ GV+A L
Sbjct: 218 MIEKDPAYSQVTARILLHTIRREILG------EEVSQGEMQARYAEYFPQFLKRGVEAEL 271

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDLV L   L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMGL
Sbjct: 272 LDDKLLQFDLVRLGEALDAGRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMGL 331

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY++LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 332 ALNEIDREARAIEFYHVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 391

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 451

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP    
Sbjct: 452 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTCP 511

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGE+K+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 512 DLHDKFGAEFEAAYLGYEEKVARGELKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 571

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 572 VRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKR 631

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LHLL  P++S  AVE A
Sbjct: 632 TVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHLLRTPFSSDAAVEFA 691

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS EL++ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +S
Sbjct: 692 DRSMEAVCYYAYWASTELSEERGRYSSYRGSLWDRGILPQDTLKLLEEARGGYVEVDMSS 751

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L++R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+VKSN+SG+FTVV
Sbjct: 752 SLDWTSLRERISLHGMRNSNCIAIAPTATISNIIGVSPCIEPTFQNLFVKSNLSGEFTVV 811

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 812 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPSDLRAIYATAFEVDPKWLVEAASR 871

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+++   SGKKLD IY+ AW+ GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 872 RQKWIDQAQSLNIFMAGASGKKLDEIYKLAWVRGLKTTYYLRTMAATHVEKSTV--AHGA 929

Query: 923 LNAVP 927
           LNAVP
Sbjct: 930 LNAVP 934


>gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
 gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
          Length = 995

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%)

Query: 10  GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           G E   P+LA   P+      +VI+RNG V +F+PSKI+ A+ KAF+AV G   + S RV
Sbjct: 21  GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 77

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           ++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R   
Sbjct: 78  RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 137

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187
           R       +          ++D+G     +   L  ++  AC GL   V+   +++ET K
Sbjct: 138 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDPIVAETVK 197

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++    +
Sbjct: 198 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 251

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFL
Sbjct: 252 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 311

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   Q
Sbjct: 312 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 371

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF
Sbjct: 372 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 431

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 432 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 491

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWR
Sbjct: 492 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 551

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL
Sbjct: 552 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 611

Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MG
Sbjct: 612 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 671

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P
Sbjct: 672 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 731

Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  
Sbjct: 732 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 791

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL
Sbjct: 792 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 851

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTY
Sbjct: 852 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 911

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           YLR+ +AT VEKST+    G LNAVP +
Sbjct: 912 YLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
 gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
          Length = 950

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/935 (59%), Positives = 694/935 (74%), Gaps = 17/935 (1%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++ +  LTE  V  L++
Sbjct: 27  VSGYQIIRRNGSVVAFEPNKIAVALMKAFLAVHGAQGAASASVRETVDQLTEGVVRALVR 86

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   HIED+QD VE  LM+ GHH++ R YVLYRE R+  R+ Q+ +   A  AP+L
Sbjct: 87  SRPGGGTFHIEDVQDHVELGLMRGGHHEVARAYVLYRERRAQERSRQAAAPQPA--APEL 144

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++ D G  +  +   L  +VE+AC+GL +DV ++ +L+ET +N+YDG+   ++  A I 
Sbjct: 145 HVV-DGGQRLPLDLDALRSLVEQACAGLGEDVRAEPILAETRRNLYDGVPLDEVYKAAIL 203

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +SRTLIEK+P Y + TAR LL  +RRE+L    + P+      M   Y EYF  Y+ +GV
Sbjct: 204 ASRTLIEKDPAYTRATARLLLHTIRREILGADVR-PEA-----MAARYAEYFPAYVRQGV 257

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYFLH++G RIE+PQAFFMRV
Sbjct: 258 QAELLDEELQRFDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRV 317

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY++LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 318 AMGLALNEIDREARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 377

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 378 EALKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 437

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP
Sbjct: 438 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSP 497

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD +G  FE AY  YER+ADRGEI+ F+++ A  LWRKMLTMLFETGHPWITFK
Sbjct: 498 SSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFK 557

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D CN+RSPQQHVGVVHSSNLCTEITLN+S+ E AVCNLGSINL  H A    D  KL  T
Sbjct: 558 DACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRT 617

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN + ++KA+ +N  HR +GLGLMGFQ  L+ L +PYAS  AVE AD
Sbjct: 618 VSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFAD 677

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSR 743
            SME + +HA  AS ELA+ERG YSS++GSLWD+GV P D++ LLA  R   + ++R+  
Sbjct: 678 RSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDRSET 737

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W  L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTVVN
Sbjct: 738 LDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVN 797

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+ DGS+  ++R+PD+LK+++ATAFE+D  WL+E+A+RR
Sbjct: 798 EYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARR 857

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLR+ SAT  EKST+    G +
Sbjct: 858 QKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTV--APGAM 915

Query: 924 NAVPVTDPNSSTHSLGIPSS---CTSDT-ECEVCQ 954
           NAVP      +  +    S    C+ D  +CE CQ
Sbjct: 916 NAVPRHGGLEAAAAAEPASDVRFCSIDNPDCEACQ 950


>gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           cenocepacia AU 1054]
 gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           cenocepacia HI2424]
 gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           cenocepacia MC0-3]
 gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           cenocepacia HI2424]
 gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 1001

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/906 (59%), Positives = 674/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGESATGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC GL   V+   +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDQNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS EAVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQEAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWTALRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 997

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/928 (58%), Positives = 682/928 (73%), Gaps = 19/928 (2%)

Query: 10  GDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           G E   P+LA   P+      +VI+RNG V +F+PSKI+ A+ KAF+AV G   + S RV
Sbjct: 23  GAEQGAPALA---PQATFADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARV 79

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           ++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R   
Sbjct: 80  RELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLE 139

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187
           R       +          ++D+G     +   L  ++  AC GL   V+   +++ET K
Sbjct: 140 RQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDPIVAETVK 199

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++    +
Sbjct: 200 NLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAD 253

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFL
Sbjct: 254 MSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQTLYDRYFL 313

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   Q
Sbjct: 314 HVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQ 373

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PF
Sbjct: 374 LSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPF 433

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 434 LKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 493

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWR
Sbjct: 494 LFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKIPAQQLWR 553

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL
Sbjct: 554 KMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNL 613

Query: 608 LAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+MG
Sbjct: 614 VAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGLGIMG 673

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P
Sbjct: 674 FQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILP 733

Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  
Sbjct: 734 QDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISNIIGVSAC 793

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL
Sbjct: 794 IEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADL 853

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           + I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTY
Sbjct: 854 RAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTY 913

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           YLR+ +AT VEKST+    G LNAVP +
Sbjct: 914 YLRTMAATHVEKSTV--AHGALNAVPTS 939


>gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella
           chejuensis KCTC 2396]
 gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 953

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/929 (58%), Positives = 687/929 (73%), Gaps = 8/929 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G    FD  KI+ A+ KAF+AVEG+ AS S RV+D ++ L +  V RL + + 
Sbjct: 30  LQVIKRTGQAAPFDDRKIAMAVTKAFLAVEGQSASGSPRVRDSVEKLVKDIVARLRRRSP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               VHIE+IQD VE  LM+ G HK+ R YVLYREE +  RA  + S+      P + + 
Sbjct: 90  EGGSVHIEEIQDLVELGLMRGGFHKVARAYVLYREEHARQRAP-APSEQSGETHPDINVK 148

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    N  RL  ++ +AC+ L  VS + VL    KN+Y+G+   D+  AL+ ++R 
Sbjct: 149 FADGSEAPLNMGRLRTVISDACADLDGVSEEKVLQGALKNLYNGVKHKDVNAALVMAARP 208

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE+EPNY+ V AR LL+ LR E L+ +      AT  EM  LYP  F   +E  V+  L
Sbjct: 209 LIEEEPNYSYVCARLLLDGLREESLSYL-NIAASATEGEMAELYPTAFRAIVERCVEHEL 267

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  L   LK ERD    YLGLQ LYDRYF+H   +R+E+PQAFFMRVAMGL
Sbjct: 268 LSPELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRVAMGL 327

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +++E +   RA+EFY+LLSSF +MCSTPTLFN+GT  PQLSSC+LTTVPDDL GI+GA++
Sbjct: 328 SVQEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIYGAIK 387

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 388 DNALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 447

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMN+ANWIPDLFMKRV ++  WTLFSP +  
Sbjct: 448 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSPSDAP 507

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG  FE  Y +YE   + G I +F+K+ A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 508 DLHDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFKDPCN 567

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+ H  N + D+D+L +T+ TA
Sbjct: 568 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNTVYTA 627

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +A+ +N  HR +G+GLMGFQ AL+ L +PY+S EAV  AD+SME
Sbjct: 628 VRMLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFADQSME 687

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746
            IS+ AI+AS  LA+ERG Y +++GSLWDQGV PIDS+  L + R  +   ++R   L W
Sbjct: 688 LISYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGHSLDW 747

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             +++ VK  GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 748 APVRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVINPWL 807

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK RDLWD  M++DLKY DGS+  I+RIP+D+K++  TAFEIDP WL+E+ASRRQKW
Sbjct: 808 VQELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASRRQKW 867

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ QSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT +EK +  G     NA 
Sbjct: 868 IDQGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEKIS-SGASQSDNAK 926

Query: 927 PVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           P  D + + +    P  C+  D +CE CQ
Sbjct: 927 P--DVDDTENQEPQPKFCSILDPDCEACQ 953


>gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. 383]
 gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 998

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/906 (60%), Positives = 676/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASTGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  +V  AC GL   V+   +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDLNALRALVVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VT+R LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTSRILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQF--DYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH    A+  F  D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLVAHLVKQADGSFALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AV  
Sbjct: 633 RTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVAF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWTSLRSRIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 997

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/908 (60%), Positives = 676/908 (74%), Gaps = 20/908 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  LL+   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTRNVVRALLRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASSGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC GL   V+ + +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDLNALRALIVSACDGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF +++  GV+A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQSEMSTRYAEYFPQFLRRGVEAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGAEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQPDGSYALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD---ELAMN 739
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R    E+ M+
Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDMS 752

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T  L W  L+ R+ T GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+F
Sbjct: 753 ET--LDWAALRARIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 810

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+
Sbjct: 811 TVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPKWLVEA 870

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL G KTTYYLR+ +AT VEKST+   
Sbjct: 871 ASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGKKTTYYLRTMAATHVEKSTV--A 928

Query: 920 DGKLNAVP 927
            G LNAVP
Sbjct: 929 HGALNAVP 936


>gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. TJI49]
          Length = 963

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/907 (59%), Positives = 673/907 (74%), Gaps = 17/907 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++++  LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVDQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       ++ 
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAVAGGEAAGGVIN 158

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +D+G     +   L  +V  AC GL   V+   +++ET KN+YDG+  S +  + I ++
Sbjct: 159 VVDNGVTRPLDLNALRALVVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAA 218

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RT+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A
Sbjct: 219 RTMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDA 272

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL + ++ FDL  L + L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAM
Sbjct: 273 GLLDDKLLQFDLKRLGDALDASRDLQFGYLGLQTLYDRYFLHVGGTRIEMPQAFFMRVAM 332

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ A
Sbjct: 333 GLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEA 392

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 393 LKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 452

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP  
Sbjct: 453 AVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPST 512

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDP
Sbjct: 513 CPDLHDKFGAEFEAAYTAYEEKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDP 572

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621
           CNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL
Sbjct: 573 CNIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKL 632

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE
Sbjct: 633 KRTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVE 692

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R   + ++ 
Sbjct: 693 FADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDS 752

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +  L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FT
Sbjct: 753 SESLDWTALRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFT 812

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+A
Sbjct: 813 VVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAA 872

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    
Sbjct: 873 SRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AH 930

Query: 921 GKLNAVP 927
           G LNAVP
Sbjct: 931 GALNAVP 937


>gi|207721466|ref|YP_002251906.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
 gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
          Length = 987

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/904 (60%), Positives = 675/904 (74%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE RS  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQPPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+GL D V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMVALRNLIVSACAGLGDAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L +++  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  G+ FE AY  YE +  RGEI +F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+R A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYA+  AV+ A
Sbjct: 629 TVRIAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R   L  + +S
Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
 gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
          Length = 987

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/904 (60%), Positives = 676/904 (74%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE RS  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQPPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+GL D V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMVALRNLIVSACAGLGDAVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L +++  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY+LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAIEFYHLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  G+ FE AY  YE +  RGEI +F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGRAFEQAYLGYEEKVARGEITLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+R A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYA+  AV+ A
Sbjct: 629 TVRIAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANEAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R   L  + +S
Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLEADLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 TMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           vietnamiensis G4]
 gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           vietnamiensis G4]
          Length = 996

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/906 (59%), Positives = 676/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV+++++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVRELVEQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGAESNTGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC GL   V++  +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDMNALRALIVSACDGLGTAVNADPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    +M   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQADMSARYAEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + + WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGSDWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWSTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria MEX-5]
 gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/906 (59%), Positives = 675/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC+GL   V+ + +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMSTRYTEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LLAE R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYHASTELAEERGRYSSYRGSLWDRGILPQDTLKLLAEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWTALRARIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CMR15]
          Length = 987

 Score = 1125 bits (2911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/904 (60%), Positives = 674/904 (74%), Gaps = 17/904 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+   +
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRSRPN 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE +LM+SG H + R YVLYRE RS  RA Q+      P    L +  
Sbjct: 97  GGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERA-QAGETQQQPAFIGLNVT- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++  AC+ L + V  + +L ET KN+Y+G+  S +  + I ++RT
Sbjct: 155 DGGITRPLDMAALRNLIVSACADLGESVDPEPILKETVKNLYEGVPMSQVYDSAILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ A L
Sbjct: 215 LIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAGRYADYFPQFIKRGINAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVAMGL
Sbjct: 269 LDDKLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISEKRIEMPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RAVEFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 329 SLNEIDREARAVEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYEALK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSTCP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  G+ FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKDPCN
Sbjct: 509 DLHDKVGRAFEAAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           IRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 569 IRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHVVKQADGSYALDHDKLKK 628

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ +LH+L IPYA+  AV+ A
Sbjct: 629 TVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDSLHVLRIPYATDAAVQFA 688

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YS++KGSLWD+GV P DS+ LLA+ R   L  + +S
Sbjct: 689 DTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGVLPQDSLKLLAQERGGYLEADLSS 748

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FTVV
Sbjct: 749 TMDWDGLRARIQQHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTVV 808

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+ASR
Sbjct: 809 NDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEAASR 868

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+    G 
Sbjct: 869 RQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVS--RGT 926

Query: 923 LNAV 926
           LNAV
Sbjct: 927 LNAV 930


>gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
 gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
          Length = 999

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/905 (59%), Positives = 672/905 (74%), Gaps = 15/905 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       +    A     ++
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAGGEASAGINVV 158

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G     +   L  ++  AC+GL   V+ + +++ET KN+YDG+  S +  + I ++RT
Sbjct: 159 DNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAART 218

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A L
Sbjct: 219 MIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMSTRYTEYFPQFLKRGVDAGL 272

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMGL
Sbjct: 273 LDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMGL 332

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL+
Sbjct: 333 SLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEALK 392

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 393 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 452

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    
Sbjct: 453 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGTDWTLFSPSTCP 512

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPCN
Sbjct: 513 DLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPCN 572

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
           +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL  
Sbjct: 573 VRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLKR 632

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE A
Sbjct: 633 TISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEFA 692

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTS 742
           D SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ + 
Sbjct: 693 DRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTSE 752

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVV
Sbjct: 753 SLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVV 812

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+ASR
Sbjct: 813 NEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAASR 872

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G 
Sbjct: 873 RQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHGA 930

Query: 923 LNAVP 927
           LNAVP
Sbjct: 931 LNAVP 935


>gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           cenocepacia J2315]
 gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315]
          Length = 1003

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/906 (59%), Positives = 673/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 41  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 101 GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGESTTGINV 160

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC GL   V+   +++ET KN+YDG+  S +  + I ++R
Sbjct: 161 VDNGVTRPLDLNALRALIVSACDGLGAAVNPDPIVAETVKNLYDGVPMSQVYDSAILAAR 220

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 221 TMIEKDPAYSQVTARILLHTIRREILG------EEVVQAEMSTRYAEYFPQFLKRGVDAG 274

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH++G+RIEMPQAFFMRVAMG
Sbjct: 275 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVDGTRIEMPQAFFMRVAMG 334

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 335 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 394

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 395 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 454

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 455 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 514

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G +FE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 515 PDLHDKFGADFEKAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 574

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 575 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 634

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 635 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 694

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 695 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 754

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 755 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 814

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 815 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 874

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 875 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 932

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 933 ALNAVP 938


>gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria AMMD]
 gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria AMMD]
          Length = 999

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/906 (59%), Positives = 674/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  +C+GL   V+ + +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDMNALRELIVSSCAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMTTRYTEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D+DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDHDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris
           marina MBIC11017]
 gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris
           marina MBIC11017]
          Length = 960

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/931 (58%), Positives = 686/931 (73%), Gaps = 24/931 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V  F+  KI+ A+ KAF+AV+G  +  S RV++++  LT   VT L +   +
Sbjct: 31  KVIRRNGSVVGFEADKIAIAMTKAFLAVKGVQSGVSARVRELVATLTTNVVTALKRRQPT 90

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+SG H + R YVLYRE+RS  R  Q H    API      +M
Sbjct: 91  GGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRSQKRT-QQHGIEAAPI-----YLM 144

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G  +  + +R   +V+ AC  L D VS K +  E  KN+YDG S  +L  + I ++R+
Sbjct: 145 DGGDRVLLDLERFNDLVDSACINLGDTVSGKAIADEALKNIYDGASVVELHKSAILAARS 204

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IEK+P+Y+KVTAR LL ++R+EVL        + T  EMQ  Y EYF  +I++G+   L
Sbjct: 205 HIEKDPDYSKVTARLLLHRIRQEVLGA------EVTQAEMQARYAEYFPHFIQQGIATGL 258

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  F+L  L + L  ERD  F YLGLQ LYDRYFLH    RIE+PQAFFMRVAMGL
Sbjct: 259 LDEKLAQFNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDRRIELPQAFFMRVAMGL 318

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E+RA EFY++LS F FM STPTLFNSGT   QLSSC+LTTVPD L GI+ A++
Sbjct: 319 ALNEIDREERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCYLTTVPDALDGIYSAIK 378

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 379 DNALLSKYAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHD+NTANWIPDLFMKRV ++  WTLFSPD V 
Sbjct: 439 CAYLETWHLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKRVMEDGDWTLFSPDIVP 498

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD  GKEFE AY  YE+QA +GE+K F+ + A  LWRKML+MLFETGHPWITFKDPCN
Sbjct: 499 DLHDKVGKEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSMLFETGHPWITFKDPCN 558

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624
           +RSPQQH+G+VHSSNLCTE+TLN++  E AVCNLGS+NL+ H        Q D  KL  T
Sbjct: 559 VRSPQQHIGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMVEKNGQMQLDQAKLQHT 618

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I  A+R+LDNVID+N + +  A+ SN  HR +GLG+MGFQ  LH L +PYAS +AV+ AD
Sbjct: 619 ITIAMRMLDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLHQLRLPYASQDAVDFAD 678

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSR 743
            +ME + ++A  AS ELAQERG YS++KGSLWD+G+ P D++ LL EVR     ++ +S 
Sbjct: 679 RAMEAVCYYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLALLKEVRGGFVEVDESST 738

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           + WD L+ R+   GMRNSNC+AIAPTATIANI GVS  I+P+YQNLYVKSN+SG+FTVVN
Sbjct: 739 MDWDLLRDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQNLYVKSNLSGEFTVVN 798

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK R+LWDE MI+DLKY DGS+  I+RIP +L++++ATAFE++P W++E+A+RR
Sbjct: 799 EYLVRDLKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYATAFEVEPNWIVEAAARR 858

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            KWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLRS  AT VEKST       L
Sbjct: 859 SKWIDQAQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLGATHVEKSTAPA--SSL 916

Query: 924 NAVPVTDPNSSTHSLG-IPSSCTSDTECEVC 953
           NAV     N S++ +G I ++  S+   +VC
Sbjct: 917 NAV---SNNGSSNGIGNILTTSKSENLGQVC 944


>gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria MC40-6]
 gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria MC40-6]
          Length = 999

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/906 (59%), Positives = 673/906 (74%), Gaps = 16/906 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  L++   +
Sbjct: 39  KVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-M 148
               HIEDIQDQVE +LM+ G H + R YVLYRE+R   R       + A       I +
Sbjct: 99  GGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKRHLERQHAGEEAAAAGGEASAGINV 158

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +D+G     +   L  ++  AC+GL   V+ + +++ET KN+YDG+  S +  + I ++R
Sbjct: 159 VDNGVTRPLDMNALRELIVSACAGLGAAVNPEPIVAETVKNLYDGVPMSQVYDSAILAAR 218

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+IEK+P Y++VTAR LL  +RRE+L       ++    EM   Y EYF ++++ GV A 
Sbjct: 219 TMIEKDPAYSQVTARILLHTIRREILG------EEVLQAEMATRYTEYFPQFLKRGVDAG 272

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL + ++ FDL  L   L   RD  F YLGLQ LYDRYFLH+ G+RIEMPQAFFMRVAMG
Sbjct: 273 LLDDKLLQFDLKRLGEALDANRDLQFGYLGLQTLYDRYFLHVEGTRIEMPQAFFMRVAMG 332

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E ++E RA+EFYN+LSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ AL
Sbjct: 333 LSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFNSGTHRSQLSSCYLTTVADDLDGIYEAL 392

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 393 KENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 452

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A WTLFSP   
Sbjct: 453 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGADWTLFSPSTC 512

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G EFE AY  YE +  RGEIK+F+KI A  LWRKML MLFETGHPWITFKDPC
Sbjct: 513 PDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAQQLWRKMLGMLFETGHPWITFKDPC 572

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH           D DKL 
Sbjct: 573 NVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHLVKQADGSYALDQDKLK 632

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LHLL  PYAS  AVE 
Sbjct: 633 RTISVAMRMLDNVIDINYYAVPKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASEAAVEF 692

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 693 ADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGILPQDTLKLLTEARGGYVEVDTS 752

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 753 ESLDWTTLRSRIAAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 812

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+R LWDE M++DLKY DG +  I+RIP DL+ I+ATAFE+DP WL+E+AS
Sbjct: 813 VNEYLVRDLKERGLWDEVMVADLKYFDGMLSRIDRIPADLRAIYATAFEVDPTWLVEAAS 872

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +AT VEKST+    G
Sbjct: 873 RRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKSTV--AHG 930

Query: 922 KLNAVP 927
            LNAVP
Sbjct: 931 ALNAVP 936


>gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp.
           JS666]
 gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 969

 Score = 1124 bits (2907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/899 (58%), Positives = 682/899 (75%), Gaps = 13/899 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  LT+  +  L++    
Sbjct: 35  QIIRRNGSVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGLTQAVIRALMRSRPG 94

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+ GHH+I R YVLYRE+RS  RA Q   ++ AP AP L +  
Sbjct: 95  GGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKRSQERARQP--QTPAPEAPMLHVT- 151

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G  ++ + + L+ ++E +C+ L  DV    +++ET +N+YDG+   ++  A I ++RT
Sbjct: 152 DGGQRVALDVRNLQALIEASCANLGADVKPDPIVAETMRNLYDGVPIDEVYKASILAART 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR L+  +RREVL       ++ +  EM   Y EYF ++I +GV+  L
Sbjct: 212 LIEKDPDYTYATARLLMHTIRREVLG------EEVSQEEMHSRYAEYFPKFIAKGVQNEL 265

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  L   LK ERD  F+YLGLQ L+DRYFLH+   RIE+PQAFFMRVAMGL
Sbjct: 266 LDEKLQQFDLARLGAALKPERDLKFDYLGLQTLFDRYFLHVRKQRIELPQAFFMRVAMGL 325

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY +LSSF FM STPTLFN+GT   QLSSC+LTTV DDL GI+ A++
Sbjct: 326 SLGEIDREARAIEFYEILSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVADDLGGIYDAIK 385

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 386 ENALLSKFAGGLGNDWTPVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 445

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP +  
Sbjct: 446 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSDTP 505

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +GKEFE  Y  YE +A+RGEIK  RK+ A  +WRKML+MLFETGHPWITFKD CN
Sbjct: 506 DLHDKFGKEFEKIYTAYEARAERGEIKPARKLQATDMWRKMLSMLFETGHPWITFKDACN 565

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  +   D+DKL  TI TA
Sbjct: 566 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLKDGAIDHDKLKKTITTA 625

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ  L+ L +PYAS EAVE AD+SME
Sbjct: 626 MRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVEFADKSME 685

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            + +HA  AS ELA+ERG Y+S+KGSLWD+G+ P+D++ +LAE R   + ++R++ L WD
Sbjct: 686 AVCYHAYWASTELAKERGKYASYKGSLWDKGILPLDTLDMLAEERGGYVEVDRSATLDWD 745

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++++   GMRNSNC+AIAPTATI+NI GV   I+P + NL VKSN+SG+FTV+N +LV
Sbjct: 746 ALRQKIAQDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINHYLV 805

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK+  LWD+ M+ DLK+ DGS+  ++R+P ++K ++ATAFE++  W++E+A+RRQKWI
Sbjct: 806 RDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEIKALYATAFEVETSWIVEAAARRQKWI 865

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           DQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST+K   GK+N+V
Sbjct: 866 DQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHAEKSTVKA--GKMNSV 922


>gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           europaea ATCC 19718]
 gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC
           19718]
          Length = 955

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/931 (57%), Positives = 697/931 (74%), Gaps = 17/931 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V +F+P KIS A+ KAF+AV G  ++ S  +++I+  LT + V  L +    
Sbjct: 36  KIIRRNGAVVAFEPGKISIALTKAFIAVRGGQSAASSSMREIVAQLTGEVVHALTRRRPE 95

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIEDIQDQVE +LM+SG H I R YVLYREER+  RA Q   +S  P + ++ ++ 
Sbjct: 96  GGTFHIEDIQDQVELALMRSGDHDIARAYVLYREERARERARQ---QSAQPASGQVAVLH 152

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +++G  I  +  +L   +E AC  L + V + +++    K++YDG+   ++  + I S+
Sbjct: 153 VVENGQKIPLDPAQLMARIESACQNLGNTVDAALIVKSMLKDLYDGVPAEEVRKSAILSA 212

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R LIEKEP Y+ VTAR LL+ +R EVL       ++  H  MQ  Y EYF  ++ +G++A
Sbjct: 213 RALIEKEPAYSFVTARLLLDNIRYEVLG------EEVAHEAMQSRYAEYFPEFVRKGIEA 266

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL E +  FDL  L+  L  +RD  F YLGLQ LYDRYFLH++  RIE+PQ FFMRVAM
Sbjct: 267 GLLDERLGQFDLARLSEALAADRDLQFGYLGLQTLYDRYFLHVSERRIELPQIFFMRVAM 326

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++E RA+EFY+LLS F FM STPTLFNSGTR  QLSSC+L+TVPD L GI+ A
Sbjct: 327 GLALNEIDREARAIEFYHLLSKFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEA 386

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           ++ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKG
Sbjct: 387 IKENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKG 446

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKR+ ++  WTLFSP +
Sbjct: 447 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMQEDQEWTLFSPSD 506

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD +G+ FE AY  YE QA +G + +F++I A  LWRKMLTMLFETGHPWITFKDP
Sbjct: 507 TPDLHDKFGRAFEEAYIAYEEQAAQGRLTLFKRIPARQLWRKMLTMLFETGHPWITFKDP 566

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQ HVGVVHSSNLCTEITLN+S +E AVCNLGS+NLLAH  + + D  +L  T+ 
Sbjct: 567 CNIRSPQNHVGVVHSSNLCTEITLNTSEKEIAVCNLGSVNLLAHIVDGKLDQARLKQTVT 626

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L I YASPEAVE AD S
Sbjct: 627 TAMRMLDNVIDINFYAVAKARNANFRHRPVGLGIMGFQDCLHKLGISYASPEAVEFADRS 686

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLP 745
           ME +++H   AS ELA+ERG Y++++GSLWD+G+ P D++ LL E R   + ++ +S   
Sbjct: 687 MEAVAYHTYWASTELAEERGTYATYRGSLWDRGILPQDTLELLREERGGHVEIDTSSTQD 746

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ R++  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FTVVN +
Sbjct: 747 WDALRDRIRQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQW 806

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LVN+LK++DLWDE MI+DLK++DG++  I+R+P++L+ ++ATAFE+DP WL+E+ASRRQK
Sbjct: 807 LVNDLKKQDLWDEVMIADLKHYDGAVSKIDRVPENLRNLYATAFEVDPRWLVEAASRRQK 866

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   SGKK+D +YR AWL GLKTTYYLR+  AT+ EKST+    G LNA
Sbjct: 867 WIDQAQSLNLYMAGASGKKMDELYRLAWLRGLKTTYYLRALGATTAEKSTVH--TGTLNA 924

Query: 926 VPVT-DPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           VP   + ++   +   P  C  D  ECE CQ
Sbjct: 925 VPAQHEAHAGNLAHSAPQQCAIDNPECEACQ 955


>gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 928

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/927 (58%), Positives = 692/927 (74%), Gaps = 18/927 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RNG +T+FDP KI  A+ KAF+AVEG+ ++ + R+Q +   LT Q V + L    +
Sbjct: 18  QVIRRNGALTAFDPDKIQLAMKKAFLAVEGERSADAARIQQVTAELTAQVV-QALTRRPT 76

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           A  +HIEDIQDQVE +LM++G HK+ R YVLYREE +  R  ++   +D P  P+L +  
Sbjct: 77  ATPIHIEDIQDQVELALMRAGEHKVARAYVLYREEHARKRRQEA---TDEP--PRLHMTR 131

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG  +  +   L  ++  AC  L D   + V  E ++N+YDG++E ++  ALI S+R+L
Sbjct: 132 TDGEQVPLDESLLRRVLHHACHELADTDPERVAREAWRNLYDGVTEQEVHKALILSARSL 191

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE+EP Y  V AR L  +L  E L  +      A   +    Y +YF RYI  GV+  LL
Sbjct: 192 IEQEPAYGHVAARLLQHQLNGEALRFLDFPYDGAPGADPG--YTDYFARYIRRGVELELL 249

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E ++ FDL  LA  L  ERD  F YLGLQ LYDRY  H +G+R E+PQAFFMRVAMGL 
Sbjct: 250 DEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMGLT 309

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E E+E+RA+EFY LLSSF FM STPTLFNSGTR PQLSSC+LT+VPDDL GI+GA+++
Sbjct: 310 LQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAIRD 369

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWT VR +GAHI GTNG+SQGV+PFLKVA+DTAVAVNQGGKRKGAVC
Sbjct: 370 NALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGAVC 429

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTA+W+PDLFM+R   +A WTLFSPD+ + 
Sbjct: 430 AYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDAAH 489

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LH+LYG+ F+ AYE+ E +A RGEI+ ++ +SA  LWR+ML MLFETGHPWITFKDPCN+
Sbjct: 490 LHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPCNL 549

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGS+NL AH   +  D+++L +T+RTA+
Sbjct: 550 RSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRTAM 609

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +++ +A+++N  HR +GLG+MGFQ AL+   +PYAS EAV  AD S E 
Sbjct: 610 RMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQEA 669

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748
           IS++AI AS +LA+ERGAY SF+GSLW +G  P+DSI  + E RD +  M+ +S L W  
Sbjct: 670 ISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGDCTMDTSSSLDWAA 729

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++V+T GMRNSNC+AIAPTATIANI GVSQ I+P+++NLYVKSN+SG+FTVVN  LV 
Sbjct: 730 LREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPALVR 788

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            LK   LWD  M++DLKY+DGS+  I R+P++LK+  ATAFE+D  WL+++ SRRQKW+D
Sbjct: 789 ALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQKWLD 848

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVP 927
           Q+QSLNLY+ EPSG KLD +YRQAW +GLKTTYYLRS  AT VEKST+      +LNAV 
Sbjct: 849 QSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKSTMDPARANRLNAV- 907

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 S    G  S    D ECE CQ
Sbjct: 908 ------SAAPGGGQSCSVDDPECEACQ 928


>gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax
           paradoxus S110]
 gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus S110]
          Length = 971

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/954 (56%), Positives = 702/954 (73%), Gaps = 31/954 (3%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  LT+  +
Sbjct: 29  PAGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQGAASASVRETVDALTQGVI 88

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             +++        HIED+QDQVE  LM+ GHH+I R YVLYRE R+  R+ Q   + +AP
Sbjct: 89  RAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERSKQV--EQEAP 146

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE 199
             P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +++ET +N+YDG+   ++ 
Sbjct: 147 ATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPIVAETMRNLYDGVPLDEVY 205

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A I ++RTLIEK+P+Y   TAR LL  + +E++       ++AT       Y +YF ++
Sbjct: 206 KASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPAERAT------AYADYFPQF 259

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ LYDRYFLH+  SRIE+PQA
Sbjct: 260 IKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKSRIELPQA 319

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+GT   QLSSC+LTTVPDD
Sbjct: 320 FFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDD 379

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVN
Sbjct: 380 LDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVN 439

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   W
Sbjct: 440 QGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTW 499

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I A  LWRKMLTMLFETGHP
Sbjct: 500 TLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHP 559

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  + + D +
Sbjct: 560 WITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQE 619

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLMGFQ AL+ L IPYAS EA
Sbjct: 620 KLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEA 679

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738
           V+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ PID++ LL + R   + +
Sbjct: 680 VQFADESMEAICYHAYWASTELARERGKYSSYKGSLWDKGILPIDTLDLLEKARGGYVEV 739

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +R++ L W+ L++++K  GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+
Sbjct: 740 DRSATLDWEALRQKIKADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 799

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D+K ++ATAFE++  WL+E
Sbjct: 800 FTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVE 859

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR++SAT  EKST++ 
Sbjct: 860 AAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQS 919

Query: 919 VDGKLNAVPVTDPNSSTHS-------------LGIPSS----C-TSDTECEVCQ 954
             G+LNAV      SS  S               +P++    C   D  CE CQ
Sbjct: 920 --GRLNAVSSGSDASSGMSALEAAAAAAKAQMSAMPATDIAFCGVDDPTCEACQ 971


>gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, alpha subunit) (Ribonucleotide
           reductase large subunit) [Thiomonas sp. 3As]
          Length = 974

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/947 (57%), Positives = 684/947 (72%), Gaps = 31/947 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V  LL+   S
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRSRPS 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE SLM++G H++ R YVLYRE R+  RA Q  +      AP L ++ 
Sbjct: 97  GGTFHIEDIQDQVELSLMRTGQHEVARAYVLYRERRTQERAKQKAAAEQQESAPVLHVL- 155

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  A I +SRT
Sbjct: 156 DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKAAILASRT 215

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I+EGV+  L
Sbjct: 216 LIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVELEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMPQAF 320
           L E +  FDL  L   LK ERD  F+YLGLQ LYDRYFL        + +G RIE+PQAF
Sbjct: 270 LDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAF 329

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+LTTV DDL
Sbjct: 330 FMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDL 389

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQ
Sbjct: 390 DGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQ 449

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +   WT
Sbjct: 450 GGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGDWT 509

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+MLFETGHPW
Sbjct: 510 LFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPW 569

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           ITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  +       
Sbjct: 570 ITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKV 629

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L+ L IPY 
Sbjct: 630 IDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYG 689

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQGV P+DS+ LLAE R  
Sbjct: 690 SQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLKLLAEQRGG 749

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++QNLYVKSN
Sbjct: 750 YVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSN 809

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK +++TAFE D  
Sbjct: 810 LSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYSTAFETDTQ 869

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT  EKS
Sbjct: 870 WIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKS 929

Query: 915 TLKGVDGKLNAVPVTDPN------SSTHSLGIPSSCTSDT-ECEVCQ 954
           T+K   G+LNAVP +          +    G    C  D  ECE CQ
Sbjct: 930 TVKA--GQLNAVPQSPSESASASAQAVVQSGDIRYCAIDNPECEACQ 974


>gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
 gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
          Length = 978

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/951 (57%), Positives = 685/951 (72%), Gaps = 35/951 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V  LL+   S
Sbjct: 37  KIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRSRPS 96

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE SLM++G H++TR YVLYRE R+  RA Q  +      AP L ++ 
Sbjct: 97  GGTFHIEDIQDQVELSLMRTGQHEVTRAYVLYRERRTQERAKQKAAAEQQESAPVLHVL- 155

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  A I +SRT
Sbjct: 156 DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKASILASRT 215

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I+EGV+  L
Sbjct: 216 LIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVELEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMPQAF 320
           L E +  FDL  L   LK ERD  F+YLGLQ LYDRYFL        + +G RIE+PQAF
Sbjct: 270 LDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELPQAF 329

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+LTTV DDL
Sbjct: 330 FMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVADDL 389

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQ
Sbjct: 390 DGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQ 449

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +   WT
Sbjct: 450 GGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGGEWT 509

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+MLFETGHPW
Sbjct: 510 LFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETGHPW 569

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           ITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  +       
Sbjct: 570 ITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADGAKV 629

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L+ L IPY 
Sbjct: 630 IDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRIPYG 689

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQG+ P+DS+ LLAE R  
Sbjct: 690 SQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLKLLAEQRGG 749

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++QNLYVKSN
Sbjct: 750 YVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYVKSN 809

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK ++ATAFE D  
Sbjct: 810 LSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYATAFETDTQ 869

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT  EKS
Sbjct: 870 WIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHAEKS 929

Query: 915 TLKGVDGKLNAVPVTDPNSS-----------THSLGIPSSCTSDTECEVCQ 954
           T+K   G+LNAVP +   S              S  I      + ECE CQ
Sbjct: 930 TVKA--GQLNAVPQSPSESVSALASASAQAVVQSGDIRYCAIDNPECEACQ 978


>gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 968

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/913 (58%), Positives = 680/913 (74%), Gaps = 10/913 (1%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS++   P+ ++   VIKR G V  FD  KI+ A+ KAF+AVEG  A+ S RV+D ++  
Sbjct: 10  PSVSVTAPQTLR---VIKRTGDVVPFDSGKIAVALSKAFIAVEGDNAATSSRVRDFVQRA 66

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +E      L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  RA +S +
Sbjct: 67  SENIEQAFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARARA-ESGA 125

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
               P  P L +   DG+    +  R+E +V +AC  L +V    ++ ++ KN+YDG++ 
Sbjct: 126 DITKP-HPTLNVTAPDGSTRPLDLGRVETLVFDACENLANVEPGKIVEDSLKNLYDGVTV 184

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             +  AL+ ++RTL+EK+PNY  VTAR L + LRRE L+ +    ++AT+ EM   Y   
Sbjct: 185 DGVSQALMMTARTLVEKDPNYTYVTARLLQDNLRREALSFL-GIAEEATYQEMADYYKPA 243

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  YI +G++   L   + +FDL  L + L + RD  F YLGLQ LYDRYF+H +  R E
Sbjct: 244 FQAYIAKGIEFEQLDPRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYE 303

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FMRVAMGLAL E ++E RA+EFY LLSSF +M STPTLFNSGT   QLSSC+LTT
Sbjct: 304 LPQVMFMRVAMGLALNEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTT 363

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL  I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTA
Sbjct: 364 VPDDLDNIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTA 423

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV  
Sbjct: 424 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFD 483

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSP    DLHDLYG  FE  Y+ YE     G++K+F+++ A  LWR+ML+MLFE
Sbjct: 484 DGEWTLFSPATCPDLHDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFE 543

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + Q
Sbjct: 544 TGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQ 603

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD DKL  T++TAVR+LDNVIDIN + + +A++SN  HR +GLG+MGFQ AL+   I YA
Sbjct: 604 FDGDKLKKTVKTAVRMLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYA 663

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV  AD SME +S+HAI AS +LA ERG Y S++GSLW QG+ PIDSI  L + R E
Sbjct: 664 SDEAVAFADTSMELVSYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGE 723

Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++ ++   WD +++++   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKS
Sbjct: 724 KYIEVDTSTTQDWDRIREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKS 783

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTVVN+++VN+LK+R LWDE MI+DLKY+DGS+  I+R+P+DLK  +ATAFE +P
Sbjct: 784 NLSGEFTVVNAYMVNDLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEP 843

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+A+RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  ATSVEK
Sbjct: 844 KWLVEAAARRQKWIDQAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEK 903

Query: 914 STLKGVDGKLNAV 926
           ST+    G LNAV
Sbjct: 904 STVD--RGNLNAV 914


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/899 (59%), Positives = 677/899 (75%), Gaps = 13/899 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  LT+Q +  L++    
Sbjct: 51  QIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGLTQQVIRALVRSRPG 110

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+ GHH+I R YVLYRE R+  RA Q    ++AP AP + ++ 
Sbjct: 111 GGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERAKQV--ATEAPAAPVIHVI- 167

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  +L+  +E ACSGL  DV +  +L+ET +N+YDG+   ++  A I ++RT
Sbjct: 168 DNGQRVPLDLAQLQFRIETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAART 227

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR L   + REVL       +     +MQ  Y +YF  +I+ G+ A L
Sbjct: 228 LIEKDPDYTYATARLLFHTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAEL 281

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  L + LK  RD  F+YLGLQ LYDRYFLH   +RIE+PQAFFMRVAMGL
Sbjct: 282 LDEKLQQFDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGL 341

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 342 SLNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 401

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 402 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 461

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V 
Sbjct: 462 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVP 521

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G EFE AY  YE +A RGEIK  R + A  LWRKMLTMLFETGHPWITFKD CN
Sbjct: 522 DLHDLFGAEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACN 581

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  +   D++KL  TI TA
Sbjct: 582 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTA 641

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD+SME
Sbjct: 642 MRMLDNVIDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSME 701

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++A  AS +LA+ERG Y S+KGSLWD+GV P D++ +LA  R   + ++R+S L W+
Sbjct: 702 AISYYAYWASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWN 761

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTV+NS+LV
Sbjct: 762 ALRNKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLV 821

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K+++ATAFE++  WL+E+A+RRQKWI
Sbjct: 822 RDLKRLGLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWI 881

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           DQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ SAT  EKST+    G+LNAV
Sbjct: 882 DQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHAEKSTVTA--GRLNAV 938


>gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
 gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
          Length = 971

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/908 (58%), Positives = 687/908 (75%), Gaps = 13/908 (1%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  LT+  +
Sbjct: 29  PTGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQGAASASVRETVDVLTQGVI 88

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             +++        HIED+QDQVE  LM+ GHH+I R YVLYRE R+  R+ Q   + +AP
Sbjct: 89  RAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERSKQV--EQEAP 146

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE 199
             P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +++ET +N+YDG+   ++ 
Sbjct: 147 ATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPIVAETMRNLYDGVPLDEVY 205

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A I ++RTLIEK+P+Y   TAR LL  + +E++        +AT       Y +YF ++
Sbjct: 206 KASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPVDRATA------YADYFPQF 259

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQA
Sbjct: 260 IKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTLYDRYFLHVRKTRIELPQA 319

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+GT   QLSSC+LTTVPDD
Sbjct: 320 FFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNAGTLRSQLSSCYLTTVPDD 379

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVN
Sbjct: 380 LDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVN 439

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   W
Sbjct: 440 QGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTW 499

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I A  LWRKMLTMLFETGHP
Sbjct: 500 TLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQASDLWRKMLTMLFETGHP 559

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  + + D +
Sbjct: 560 WITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDGKVDQE 619

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLMGFQ AL+ L IPYAS EA
Sbjct: 620 KLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLMGFQDALYELRIPYASQEA 679

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738
           V+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ PID++ LL + R   + +
Sbjct: 680 VQFADESMEAICYHAYWASTELAKERGKYSSYKGSLWDKGILPIDTLDLLEQARGGYVEV 739

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +R++ L WD L+ ++K  GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+
Sbjct: 740 DRSATLDWDALRAKIKADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 799

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D+K ++ATAFE++  WL+E
Sbjct: 800 FTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKALYATAFEVETTWLVE 859

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR++SAT  EKST++ 
Sbjct: 860 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTQSATHAEKSTVQS 919

Query: 919 VDGKLNAV 926
             G+LNAV
Sbjct: 920 --GRLNAV 925


>gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans
           lithotrophicus ES-1]
 gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 946

 Score = 1118 bits (2893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/937 (58%), Positives = 687/937 (73%), Gaps = 24/937 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V SF+PSKIS A+ KAF+AV G   + S RV+++++ LT   V+ L++    
Sbjct: 22  KVIRRNGSVVSFEPSKISIAVTKAFIAVNGGQGAASARVRELVEQLTANVVSALIRRQPH 81

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              +HIEDIQDQVE SLM+SG H + R YVLYRE+R+  R   S  K +   AP L I  
Sbjct: 82  GGTLHIEDIQDQVELSLMRSGEHDVARSYVLYREQRTRER---SKGKKEIDAAPALNIKD 138

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D T    +  +L   ++ AC GL   V +  +L  T K++YDG++  ++    I S+RT
Sbjct: 139 GDVTR-PLDVVQLSAQIQSACVGLGGAVDADKILKLTLKDLYDGVAVEEVRKCAILSART 197

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE++P Y+ VTAR LL  +  E+L        + +  +M   Y EYF ++I+ G++A L
Sbjct: 198 LIEQDPAYSFVTARLLLNNICCEILGG------QVSQADMAERYAEYFPKFIKRGIEAEL 251

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+E +  FDL  LA  L   RD  F YLGLQ LYDRYFLH++G RIE+PQAFFMRVAMGL
Sbjct: 252 LNEELGHFDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVDGQRIELPQAFFMRVAMGL 311

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E  +E+RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+
Sbjct: 312 SLNEINREERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALK 371

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 372 ENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 431

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +   WTLFSP    
Sbjct: 432 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSPSTCP 491

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G EFE AY  YE +   GE+K+F+K+ A +LWRKMLTMLFETGHPWITFKDPCN
Sbjct: 492 DLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITFKDPCN 551

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLA 622
           IRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL AH          Q D+DKL 
Sbjct: 552 IRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQIDHDKLK 611

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+ TA+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LH L IPY+S  A+E 
Sbjct: 612 RTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSDAAIEF 671

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD SME + ++A  AS +LA ERG Y+S++GSLWD+G+ P DS+ LL E R   + ++ +
Sbjct: 672 ADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGGYVEVDMS 731

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQN++VKSN+SG+FTV
Sbjct: 732 SNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSGEFTV 791

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N  LVN+LK   LWDE MI+DLKY DGS+  I+RIP +L++++ATAFE++P WLIE+AS
Sbjct: 792 INDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLIEAAS 851

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SG+KLD  Y+ AWL GLKTTYYLR+  ATS EKST +   G
Sbjct: 852 RRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYLRALGATSAEKSTSRA--G 909

Query: 922 KLNAVPV---TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
            LNAV         S++  +     C+ D  ECE CQ
Sbjct: 910 SLNAVSSGGGAGEMSASPVVEEAKFCSIDNPECEACQ 946


>gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
 gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
          Length = 946

 Score = 1118 bits (2891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/929 (58%), Positives = 685/929 (73%), Gaps = 22/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  +DPSKI  AI KAF+AVEG  A+ S R+ + +  LT+Q  T L Q + 
Sbjct: 37  LQVIKRNGKLVDYDPSKIRVAITKAFLAVEGGQAALSTRIHERVSQLTQQITTILQQRHP 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKI 147
               + IE IQDQVE +LM+   H++ R YVLYREER  +RA  + HS+       +L+I
Sbjct: 97  QGGTLSIETIQDQVELALMRVEAHQVARAYVLYREERRKMRAETKPHSEI------QLQI 150

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + DG+    +  +L +++ E C+ L+DV  + +L ET +N+YDG+  +D++ ALI S+R
Sbjct: 151 TLTDGSQRPLDLIQLSLLITETCNDLKDVKHERILQETLRNLYDGMPAADIDKALIISAR 210

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +L+E +P Y   TARFLL  L  E L  + + P     H    +Y  YF  YI+ G++  
Sbjct: 211 SLVEHDPQYTYATARFLLRTLYAEALHFL-ELPLHT--HRHSGIYSHYFQHYIKRGIQLE 267

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  L+  L  ERD  F YLGLQ LYDRYFLH +  R E+PQAFFMRVAMG
Sbjct: 268 LLDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMG 327

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA  E+ K  RA+EFY+LLSSF +M STPTLFNSGT  PQLSSCFLTTV DDL  I+ A+
Sbjct: 328 LAQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAI 387

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+K++GGLGNDWTPVR +GA I GTNGKS GV+PFL VAN +AVAVNQGGKRKGA
Sbjct: 388 KDNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGA 447

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR+ +   WTLFSPDE 
Sbjct: 448 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDET 507

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G  FE  Y+ YE +A RGEIK F+ I A  LWRKML++LFETGHPWITFKDPC
Sbjct: 508 PDLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPC 567

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIR 626
           N+RSPQQHVG +HSSNLCTEITLN+S +E AVCNLGSINL  H   + + +  KL  TIR
Sbjct: 568 NLRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIR 627

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN +T+ +A++SN  HR IGLGLMGFQ AL+ L +PYAS  A+  AD++
Sbjct: 628 TAIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQT 687

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME IS++AI AS +LA ERGAY SF GSLW QGV P+DSI  L + R E L  +RT+RL 
Sbjct: 688 MELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDRTARLD 747

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+K+V   GMR+SNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSG+FT++N +
Sbjct: 748 WDTLRKKVMH-GMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPY 806

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+N+LK   LWD  M++DLKY+DGS+  IERIPD LK+++ATAFEI   WL+E+ SRRQK
Sbjct: 807 LINDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQK 866

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQ+QSLNLY+   SGKKLD +Y+Q WL GLKT+YYLR+  AT  EK+TL      LN+
Sbjct: 867 WIDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATL--AKSHLNS 924

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V +       +++  P+    D +CE CQ
Sbjct: 925 VHM-------NTVATPACSIVDPDCESCQ 946


>gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
 gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
          Length = 973

 Score = 1118 bits (2891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/906 (59%), Positives = 683/906 (75%), Gaps = 21/906 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +I+RNG V  F+P KI+ A+ KAF+AV G   + S RV+++++ LT Q V  L+++  S
Sbjct: 35  HIIRRNGVVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVETLTAQVVNALVRNRPS 94

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIE+IQDQVE +LM+SG H + R YVLYRE+RS  RA      + AP A    I+ 
Sbjct: 95  GGTFHIEEIQDQVELTLMRSGEHDVARAYVLYREKRSQERA----QSTPAPAATDQTIIH 150

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             D+G     +  RL   + EA   L  ++ ++ +L ET KN+YDG+   ++  + I S+
Sbjct: 151 VTDNGVQCPLDLARLRATITEAGLNLPHNIDAEAILKETVKNIYDGIPVDEVFKSAILSA 210

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R ++E +P+Y++VTAR LL  +R+EVL       ++ +  +M   Y EYF ++++ G++ 
Sbjct: 211 RAMVENDPSYSQVTARLLLHTIRKEVLG------EEVSQSDMATRYAEYFPQFLKAGIEG 264

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL E +  FDL  LA  LK ERD  F YLGLQ LYDRYFLH+ G RIE+PQ FFMRVAM
Sbjct: 265 GLLDEKLAQFDLPKLAAALKAERDLQFNYLGLQTLYDRYFLHLRGRRIELPQVFFMRVAM 324

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E  +E+RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ A
Sbjct: 325 GLALNEINREERAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLAGIYDA 384

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           ++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 385 IKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 444

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N  WTLFSP +
Sbjct: 445 AVCAYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSD 504

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHD YGK+FE AY  YE +  RGE+ +F+K+ A  LWRKML+MLFETGHPWITFKDP
Sbjct: 505 APDLHDKYGKDFEEAYLGYEDKVARGELPLFKKVPANMLWRKMLSMLFETGHPWITFKDP 564

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQF--DYDKL 621
           CNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH    AN Q+  D++KL
Sbjct: 565 CNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLAAHLKQDANGQYVLDHEKL 624

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH++ +P+AS +AVE
Sbjct: 625 ERTIGIAMRMLDNVIDINYYAVPKARNSNVRHRPVGMGVMGFQDCLHMMRVPFASDDAVE 684

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNR 740
            +D SME   ++A  AS +LA ERG Y+SFKGSLWD+G+ P D++ LL E R   + ++ 
Sbjct: 685 FSDRSMEAACYYAYWASSKLAAERGHYASFKGSLWDRGILPQDTLALLREERGGYVEVDD 744

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +S L WD L+  +K  GMRNSNC+AIAPTATI+NI GVS  I+P+Y+NLYVKSN+SG+FT
Sbjct: 745 SSTLDWDSLRAHIKQHGMRNSNCVAIAPTATISNIIGVSPCIEPNYRNLYVKSNLSGEFT 804

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +LV +LK+R LWDE M+SDLKY DGS+  I+RIP DL+K++ATAFE+DP W++E A
Sbjct: 805 VVNDYLVRDLKERKLWDEVMVSDLKYFDGSLARIDRIPADLRKLYATAFEVDPTWVVECA 864

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           +RR KWIDQAQSLN+++   SGKKLD IY+ AW+ GLKTTYYLRS  AT+ EKST +G  
Sbjct: 865 ARRSKWIDQAQSLNIFMAGVSGKKLDDIYKLAWVRGLKTTYYLRSIGATNAEKSTGRG-- 922

Query: 921 GKLNAV 926
           G+LNAV
Sbjct: 923 GELNAV 928


>gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           eutropha C91]
 gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           eutropha C91]
          Length = 957

 Score = 1116 bits (2887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/932 (58%), Positives = 690/932 (74%), Gaps = 17/932 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V +F+P KIS A+ KAF+AV G  ++ S  +++I+  LT + V  L +    
Sbjct: 36  KVIRRNGAVVAFEPGKISIAMTKAFIAVRGGQSAASSSMREIVAQLTGEVVHALTRRRPG 95

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIEDIQDQVE +LM+SG H + R YVLYREER+  RA Q      +  A  L I+ 
Sbjct: 96  GGTFHIEDIQDQVELALMRSGDHDVARAYVLYREERARERARQQKEPPTSTQAAVLHIV- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++G  I  +  RL   +E AC  L +V ++ +++    +++YDG+   ++  + I S+R 
Sbjct: 155 ENGQRIPLDPSRLTARIESACQHLGNVVNAGLIVKAMLRDLYDGVPAEEVRKSAILSARA 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEKEP Y+ VTAR LL+ +R EVL       +  +H  MQ  Y +YF  +I +G++A L
Sbjct: 215 LIEKEPAYSFVTARLLLDNIRHEVLG------EDVSHEAMQSRYADYFPGFIRQGMEAGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  L+  L  +RD  F YLGLQ LYDRYFLHI+  RIE+PQAFFMRVAMGL
Sbjct: 269 LDERLGQFDLARLSETLIADRDLQFGYLGLQTLYDRYFLHISERRIELPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY+LLS+F FM STPTLFNSGTR  QLSSC+L+TVPD L GI+ A++
Sbjct: 329 ALNEIDREARAIEFYHLLSTFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDGIYEAIK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKR+ ++  WTLFSP +  
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMLEDQEWTLFSPSDTP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLH+ YGK FE AY  YE QA +G + + ++I A  LWRKMLTMLFETGHPWITFKDPCN
Sbjct: 509 DLHEKYGKAFEEAYIAYEEQATQGRLALHKRIPARQLWRKMLTMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           IRSPQ HVGVVHSSNLCTEITLN++ +E AVCNLGSINL AH  + + D  KL  T+ TA
Sbjct: 569 IRSPQNHVGVVHSSNLCTEITLNTNEKEIAVCNLGSINLPAHIVDGKLDLTKLKQTVATA 628

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L I YAS EAVE AD SME
Sbjct: 629 MRMLDNVIDINFYAVAKARNANLRHRPVGLGIMGFQDCLHKLGISYASREAVEFADSSME 688

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
            +++H   AS ELA+ERG Y+++ GSLW++G+ P DS+ LL E R   + ++ +S L W 
Sbjct: 689 AVAYHTYWASTELAEERGTYATYHGSLWERGILPQDSLALLQEERGGHVEVDTSSTLDWT 748

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++R+K  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FTVVN  LV
Sbjct: 749 PLRERIKQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTVVNQSLV 808

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK++DLWDE MI+DLK++DG+   I+RIP++L+ ++ATAFEIDP WL+E+A+RRQKWI
Sbjct: 809 NDLKKQDLWDEVMIADLKHYDGAASKIDRIPENLRALYATAFEIDPRWLVEAAARRQKWI 868

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY+   SGKK+D +YR AWL GLKTTYYLR+  AT+ EKST+    G LNAVP
Sbjct: 869 DQAQSLNLYMSGASGKKMDDLYRLAWLRGLKTTYYLRAMGATTAEKSTVH--TGTLNAVP 926

Query: 928 V-----TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 TD +   HS         D ECE CQ
Sbjct: 927 AQQNGHTDSSGQIHS-ATKQCAIDDPECEACQ 957


>gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
 gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
          Length = 975

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/919 (58%), Positives = 690/919 (75%), Gaps = 13/919 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++  LT      L++    
Sbjct: 33  QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVREVVDTLTHNVTRALMRSRPG 92

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+SGHH+I R YVLYRE R+  +    H++   P AP+L ++ 
Sbjct: 93  GGTFHIEDVQDQVELGLMRSGHHEIARAYVLYRERRT--QERTRHNEEQLPQAPQLHVL- 149

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G  +  +  RL+ ++E AC+GL  DVS++ +++ET +N+YDG+   ++  A I ++RT
Sbjct: 150 DGGERVVLDQGRLQSLIESACTGLGADVSAQPIVAETMRNLYDGVPMEEVYKASILAART 209

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR LL  + REVL       ++    +M   Y +YF ++I++GV+  L
Sbjct: 210 LIEKDPDYTYATARLLLHTIVREVLG------REVAPADMAQSYVDYFPQFIKKGVENDL 263

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E ++ +DL  L   LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL
Sbjct: 264 LDERLLQYDLQRLGAALKAERDLQFDYLGLQTLYDRYFLHVKKNRIELPQAFFMRVAMGL 323

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 324 SLNEIDREARAIEFYEILSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 383

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 384 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 443

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V 
Sbjct: 444 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVP 503

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G +FE AY  YE +A RGEIK  R + A  LWRK+LTMLFETGHPWITFKD CN
Sbjct: 504 DLHDLFGTDFEKAYVAYEEKAARGEIKPARTVQATDLWRKILTMLFETGHPWITFKDACN 563

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  N Q D+DKL  TI  A
Sbjct: 564 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNGQIDHDKLKKTITVA 623

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +GLG+M FQ +L+ L IPYAS EAVE AD+SME
Sbjct: 624 MRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMAFQDSLYELRIPYASQEAVEFADQSME 683

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            I ++A  AS ELA+ERG YSS+KGSLWD+G+ P+D++ +LA+ R   + ++R++ L WD
Sbjct: 684 AICYYAYWASTELARERGRYSSYKGSLWDRGILPLDTLDMLAQARGGYVEVDRSATLDWD 743

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+K++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N  LV
Sbjct: 744 ALRKKIAQDGMRNSNCVAIAPTATISNIIGVDASIEPSFGNLSVKSNLSGEFTVINGGLV 803

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK+  LWD+ MI DLK+  GS+  I+R+P D+K +++TAFE++P WL+E+ASRRQKWI
Sbjct: 804 RDLKRLGLWDDVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVEPRWLVEAASRRQKWI 863

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT VE ST+     +LNAV 
Sbjct: 864 DQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQLNAVS 921

Query: 928 VTDPNSSTHSLGIPSSCTS 946
               N  +H+    S+  S
Sbjct: 922 SGHDNGGSHASAAQSAPPS 940


>gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
 gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 821

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/771 (67%), Positives = 629/771 (81%), Gaps = 2/771 (0%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
           +R+  +V EAC GL   S++ V++E  +  Y G++ ++LE ALI ++RT +E +P+Y+ V
Sbjct: 2   ERIRKVVAEACQGLPGASAETVIAEATRGFYPGITPAELELALIMAARTFVETDPDYSYV 61

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +AR LL+KLRRE LT +   P +ATH +M   YPEY   +I  G++   L   + DFDL 
Sbjct: 62  SARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHLTPELADFDLD 121

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L   L+ ERD  F YLGLQ LYDRYFLH  G+R E+PQAF MRVAMG+AL E ++  RA
Sbjct: 122 RLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVALHEDDRNARA 181

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +EFY LLSSF FMCSTPTLFN+GTR PQLSSCFLTTV DDL  IF A+  NA+L+KYSGG
Sbjct: 182 IEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISNNALLSKYSGG 241

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           LGNDWTPVRGLGAHI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID+
Sbjct: 242 LGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDI 301

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEFLDLRKNTGD+RRRTHDMNTANW+PDLF++RV  +A WTLFSPDEV DLHD YG++F 
Sbjct: 302 EEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPDLHDRYGEDFA 361

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            AY  YER ADRGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVV
Sbjct: 362 RAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVV 421

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           HSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D ++L  T+RTAVR+LDNVID+N
Sbjct: 422 HSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAVRMLDNVIDVN 481

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +TI +A+++N  HR IGLGLMG+Q AL  L +P ASPEAVE ADESME +S++AI AS 
Sbjct: 482 LYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEASA 541

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELKKRVKTIGM 758
           +LA ERG+YSSF+GSLW +G+ PIDS+ LLAE  R +L ++RT RL WD L+++V+T GM
Sbjct: 542 DLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDRTQRLDWDTLREKVRTTGM 601

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNSN MAIAPTATIANI GV+ SI+P Y+NLYVK+NMSGDFTVVN  LV +LK+R LWDE
Sbjct: 602 RNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSLVRDLKERGLWDE 661

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M++ LK HDGS+G I+R+P+DLK ++ATAFEIDP+WL+++ASRRQKWIDQAQSLNLY+ 
Sbjct: 662 EMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKWIDQAQSLNLYMA 721

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PV 928
           EPSG+KLD +YR+AW  GLKTTYYLRS+ AT VEKSTL+G DG+LNAV PV
Sbjct: 722 EPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTLRGTDGRLNAVTPV 772


>gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           parapertussis 12822]
 gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica RB50]
 gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           parapertussis]
 gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica RB50]
          Length = 975

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/959 (56%), Positives = 695/959 (72%), Gaps = 53/959 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT Q V+ L+++  + 
Sbjct: 35  IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAG 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYRE-------------ERSDVRAAQSHSKS 137
              HIED+QDQVE +LM+SG H + R YVLYRE             E+S   AAQ     
Sbjct: 95  GTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQE---- 150

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196
                P L ++ D+G     +   L   +E A  GL Q   ++ +L ET KN+YDG+   
Sbjct: 151 -----PTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVD 204

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL       ++ +  +M   Y EYF
Sbjct: 205 EVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQADMATRYAEYF 258

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             +I+ G++  LL   + ++DL  +A  L   RD  F YLGLQ LYDRYFLH+ G+RIE+
Sbjct: 259 PAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIEL 318

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV
Sbjct: 319 PQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTV 378

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAV
Sbjct: 379 SDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAV 438

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N
Sbjct: 439 AVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEN 498

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP +  DLHD YGK FE AY  YE +   GE+K+F+K+ AV+LWRKML+MLFET
Sbjct: 499 GEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFET 558

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---AN 613
           GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL+AH    AN
Sbjct: 559 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSAN 618

Query: 614 N--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+DKL  TI  A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH++ 
Sbjct: 619 GGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMR 678

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PYAS +A++ AD SME + +HA  AS ELAQERG Y S++GSLW +G+ P D++ +L E
Sbjct: 679 VPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLRE 738

Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLY
Sbjct: 739 ERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLY 798

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L+K++ATAFE
Sbjct: 799 VKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFE 858

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS
Sbjct: 859 VEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATS 918

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954
            EKST +G  G+LNAV   D  + +     P         + CT         ECE CQ
Sbjct: 919 AEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975


>gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha
           [Verminephrobacter eiseniae EF01-2]
 gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 968

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/920 (58%), Positives = 685/920 (74%), Gaps = 20/920 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR-LLQHNK 88
           Q+++RNG V  F P KI+ A+MKAF+AV G   + S  V++++  LT QTVTR L++   
Sbjct: 34  QIMRRNGAVVPFQPQKIALAMMKAFLAVHGTQGAASASVREVVDGLT-QTVTRALMRSRP 92

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                HIED+QDQVE  LM+ GHH+I R YVLYRE R+  R+ Q   +   P A  L ++
Sbjct: 93  GGGTFHIEDVQDQVELGLMRGGHHEIARSYVLYRERRTQERSRQGSPQQ--PAAALLHVL 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D G  ++ +  RL+ ++E AC GL  DV +  +++ET +N+YDG+   ++  A I ++R
Sbjct: 151 -DAGVRVALDPARLQALIESACVGLGPDVKADPIVAETMRNLYDGVPMDEVCKAAILAAR 209

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TLIEK+P+Y+  TAR LL  + REVL +    PQ     +M   Y +YF R+I++GV   
Sbjct: 210 TLIEKDPDYSYATARLLLHTIVREVLGS--DVPQA----QMALAYGDYFPRFIKKGVDNG 263

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL E ++ +DL  L   ++ ERD  F+YLGLQ LYDRYFLH+  +RIE+PQ FFMRVAMG
Sbjct: 264 LLDERLLQYDLQRLGAAIRAERDLKFDYLGLQTLYDRYFLHVRKTRIELPQVFFMRVAMG 323

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E E+E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ ++
Sbjct: 324 LALNEVEREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESI 383

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+L+K++GGLGNDWT VR LG++I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 384 KENALLSKFAGGLGNDWTRVRALGSYIAGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGA 443

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM RV +   WTLFSP  V
Sbjct: 444 VCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMHRVMEKGHWTLFSPSSV 503

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLH+L+G +FE AY  YE QA RG I   R + A  LWRKMLTMLFETGHPWITFKD C
Sbjct: 504 PDLHELFGADFEKAYVAYEEQAARGAIGPARTVQATDLWRKMLTMLFETGHPWITFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  + Q D+DKL  TI  
Sbjct: 564 NLRSPQQHAGVVHSSNLCTEITLNTSDSETAVCNLGSVNLLQHLKDGQIDHDKLRQTITV 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN + + KA+ SN  HR +GLG+M FQ  L+ L IPYAS  AVE AD+SM
Sbjct: 624 AMRMLDNVIDINYYAVRKARDSNLRHRPVGLGVMAFQDCLYELRIPYASQAAVEFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPW 746
           E I ++A  AS ELA+ERG Y S++GSLW++G  P+D++ LLA+ R D L ++R+SRL W
Sbjct: 684 EAICYYAYWASTELAKERGKYLSYEGSLWERGQLPLDTLDLLAQARGDYLQVDRSSRLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L++++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N+ L
Sbjct: 744 DALRQKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINAGL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK+  LWDE MI DLK+  GS+  I+R+P D+K +++TAFE+DP WL+E+ASRRQKW
Sbjct: 804 VRDLKRLGLWDEVMIMDLKHFKGSLHPIDRVPQDIKALYSTAFEVDPQWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLN+Y+   SG+KLD  Y+ AW+ GLKTTYYLR++SAT VE ST+    G+LNAV
Sbjct: 864 IDQAQSLNIYMAGASGRKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TGQLNAV 921

Query: 927 PVTDPNSSTHSLGIPSSCTS 946
                +S  H     ++ TS
Sbjct: 922 -----SSGPHGDAFGAAATS 936


>gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           ebreus TPSY]
 gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           ebreus TPSY]
          Length = 974

 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/933 (57%), Positives = 687/933 (73%), Gaps = 18/933 (1%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A P+ A+P    +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++ 
Sbjct: 22  ATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+  RA + 
Sbjct: 78  QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
                 P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET +N+YDG
Sbjct: 138 EQL--LPQMPALYVQ-DQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   ++  A I ++RTLIEK+P Y   TAR LL  + REVL       +      M   Y
Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPANMALAY 248

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYFLH+  +
Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQ+FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+
Sbjct: 309 RIELPQSFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N
Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LWRKML+M
Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  
Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ L I
Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+ LL + 
Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL V
Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++ATAFE+
Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT V
Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           E ST+     +LNAV     ++   ++  PSS 
Sbjct: 909 EMSTVN--TRQLNAVASGASDTGEGTMA-PSSA 938


>gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis Tohama I]
 gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           pertussis Tohama I]
 gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis CS]
          Length = 975

 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/959 (56%), Positives = 693/959 (72%), Gaps = 53/959 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT Q V+ L+++  + 
Sbjct: 35  IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAG 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYRE-------------ERSDVRAAQSHSKS 137
              HIED+QDQVE +LM+SG H + R YVLYRE             E+S   AAQ     
Sbjct: 95  GTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQE---- 150

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196
                P L ++ D+G     +   L   +E A  GL Q   ++ +L ET KN+YDG+   
Sbjct: 151 -----PTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVD 204

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL       ++ +  +M   Y EYF
Sbjct: 205 EVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQADMATRYAEYF 258

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             +I+ G++  LL   + ++DL  +A  L   RD  F YLGLQ LYDRYFLH+ G+RIE+
Sbjct: 259 PAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIEL 318

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV
Sbjct: 319 PQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTV 378

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAV
Sbjct: 379 SDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAV 438

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N
Sbjct: 439 AVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEN 498

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP +  DLHD YGK FE AY  YE +   GE+K+F+K+ AV+LWRKML+MLFET
Sbjct: 499 GEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFET 558

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-- 614
           GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL+AH   N  
Sbjct: 559 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNAN 618

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + ++DKL  TI  A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH++ 
Sbjct: 619 GGYELNHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMR 678

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PYAS +A++ AD SME + +HA  AS ELAQERG Y S++GSLW +G+ P D++ +L E
Sbjct: 679 VPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLRE 738

Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI G S  I+P++QNLY
Sbjct: 739 ERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLY 798

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L+K++ATAFE
Sbjct: 799 VKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFE 858

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS
Sbjct: 859 VEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATS 918

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954
            EKST +G  G+LNAV   D  + +     P         + CT         ECE CQ
Sbjct: 919 AEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ 975


>gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
           JS42]
 gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
           JS42]
          Length = 972

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/915 (58%), Positives = 680/915 (74%), Gaps = 17/915 (1%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A P+ A+P    +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++ 
Sbjct: 22  ATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+  RA + 
Sbjct: 78  QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
                 P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET +N+YDG
Sbjct: 138 EQL--LPQMPALYVQ-DQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   ++  A I ++RTLIEK+P Y   TAR LL  + REVL       +     +M   Y
Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPADMALAY 248

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYFLH+  +
Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQ FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+
Sbjct: 309 RIELPQTFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N
Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LWRKML+M
Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  
Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ L I
Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+ LL + 
Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL V
Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++ATAFE+
Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT V
Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908

Query: 912 EKSTLKGVDGKLNAV 926
           E ST+     +LNAV
Sbjct: 909 EMSTVN--TRQLNAV 921


>gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           avium 197N]
 gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium
           197N]
          Length = 970

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/944 (57%), Positives = 697/944 (73%), Gaps = 29/944 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+P KI+ A+ KAF+AV G   + S RV++++  LTEQ V  L+++  S 
Sbjct: 36  LIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVGQLTEQVVNALVRNRPSG 95

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS--HSKSDAPIAPKLKIM 148
              HIED+QDQVE SLM+SG H + R YVLYRE R+  RAA +    K+  P  P L + 
Sbjct: 96  GTFHIEDVQDQVELSLMRSGQHDVARAYVLYRERRAQERAAAAEVQDKAAVPAEPTLNVN 155

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            D+G     +  +L   +E A  GL + + ++ +L ET KN+YDG+   ++  + I ++R
Sbjct: 156 -DNGVRRPLDMAQLRATIEAAGVGLTEFIDTETILKETVKNLYDGVPVDEVFKSAILAAR 214

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            L+EK+P Y++VTAR LL  +R+EVL       ++ +   M   Y  YF  +I+ G++A 
Sbjct: 215 ALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQASMAERYATYFPTFIQRGIEAG 268

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   + +FDL  +A  L   RD  F YLGLQ LYDRYFLH+ G+RIE+PQ FFMRVAMG
Sbjct: 269 LLDAKLAEFDLERIARALNANRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMG 328

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL+E+++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ A+
Sbjct: 329 LALRESDREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAI 388

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 389 KENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGA 448

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N  WTLFSP + 
Sbjct: 449 VCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFSPSDC 508

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD YG+ FE AY  YE +A  GE+K+F+K+ A++LWRKML+MLFETGHPWITFKDPC
Sbjct: 509 PDLHDKYGRAFEQAYLGYEAKAASGELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPC 568

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANN--QFDYDKLA 622
           NIRSPQQH+GVVHSSNLCTEITLN++  E AVCNLGS+NL+AH    AN   + D+DK+ 
Sbjct: 569 NIRSPQQHIGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPSANGGYELDHDKIK 628

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+  A+R+LDNVIDIN + +EKA+ SN  HR +GLG+MGFQ  LH++ +PYAS  A+E 
Sbjct: 629 HTVGIAMRMLDNVIDINYYAVEKARNSNLRHRPVGLGIMGFQDCLHMMRVPYASQAAIEF 688

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741
           AD SME + + A  AS  LA+ERG Y S++GSLW +G+ P DSI +L + R   + ++ +
Sbjct: 689 ADRSMEAVCYQAYWASSTLAEERGRYPSYEGSLWSRGILPQDSIAMLRDERGGNVDVDES 748

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTV
Sbjct: 749 SSLDWDTLRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTV 808

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L++++ATAFE++P WL+E A+
Sbjct: 809 VNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLVECAA 868

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS EKST +G  G
Sbjct: 869 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTMGATSAEKSTGRG--G 926

Query: 922 KLNAVPVTDPNSSTHSL-----GIPSSCTSDT------ECEVCQ 954
           +LNAV   + ++S   +      + ++CT         ECE CQ
Sbjct: 927 ELNAVSAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEECEACQ 970


>gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 976

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/950 (56%), Positives = 687/950 (72%), Gaps = 34/950 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++NLT Q V  L+++  + 
Sbjct: 35  IIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVENLTSQAVNALVRNRPNG 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----QSHSKSDAPIAPKLK 146
              HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAA    +   KS A  A  + 
Sbjct: 95  GTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRTQERAAAAAAEGQEKSAAAPAEHVL 154

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205
            + D G     +   L   +  A  GL + + S+ +L ET KN+YDG+   ++  + I S
Sbjct: 155 NVTDAGVRRPLDLAELRATIVAAGEGLAEFIDSEAILKETVKNLYDGIPVDEVFKSAILS 214

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R L+EK+P Y++VTAR LL  +R+EVL       ++ +   M   Y EYF  +I  G++
Sbjct: 215 ARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMVARYAEYFPTFIARGIE 268

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             LL   + ++DL  L   L  +RD  F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVA
Sbjct: 269 GGLLSPELANYDLTRLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVA 328

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ 
Sbjct: 329 MGLALREADRETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYD 388

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK
Sbjct: 389 AIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 448

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +   WTLFSP 
Sbjct: 449 GAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPS 508

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +  DLHD YG+ FE AY  YE++   GE+K+++K+ A+ LWRKML+MLFETGHPWITFKD
Sbjct: 509 DCPDLHDKYGRAFEEAYIGYEKRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITFKD 568

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDK 620
           PCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH         + D DK
Sbjct: 569 PCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDLDK 628

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +  T+  A+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  L ++ +PYAS  AV
Sbjct: 629 IKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAV 688

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739
           E AD SME + +HA  AS  LA+ERG Y S++GSLW +G+ P D++ +L + R   + ++
Sbjct: 689 EFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVD 748

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+F
Sbjct: 749 ESSTLDWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 808

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L++++ATAFE++P WL+E 
Sbjct: 809 TVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVEC 868

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS EKST +G 
Sbjct: 869 ASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRG- 927

Query: 920 DGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954
            G+LNAV     +++      P         + CT         ECE CQ
Sbjct: 928 -GELNAVTAGGQSTAAAVGAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976


>gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 921

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/947 (57%), Positives = 695/947 (73%), Gaps = 39/947 (4%)

Query: 17  SLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           +LA P P      + +QVIKRNG +  FDPSKIS A+ KAF+AVEG  A+ S R+ D + 
Sbjct: 5   ALAEPRPTSHTDTESLQVIKRNGTLVGFDPSKISIAVTKAFLAVEGDTAAGSARINDAVH 64

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +T+Q +  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA   
Sbjct: 65  RVTDQVIQAIGRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA--R 122

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           H+  +A   P L +    G +   +   +++ VE+A +GL+ +    ++ +   N+YDG+
Sbjct: 123 HAPVEA--HPHLTVKKTSGEIAPLDLGLMKLQVEQAATGLEGIDGDSLVDDALTNLYDGI 180

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQC 250
           +E D+ +ALI ++R+ IE+EP+Y+ VTAR LLE+LR E    L      P       +  
Sbjct: 181 AEEDVLSALIMTARSRIEREPDYSAVTARLLLEQLRLENAAALGLPISLP-------LAE 233

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           +YP+    ++E G++  LL E++  FDL  L   L+ ERD  F +LGLQ LYDRYFLH N
Sbjct: 234 IYPQALSAFVEAGIRYELLDEALAAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWN 293

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            +R+E+PQ FFMRVAMGLAL+E +   RA+EFYNLLSSF +M STPTLFNSGTRH QLSS
Sbjct: 294 KARLELPQVFFMRVAMGLALREDDPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSS 353

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL  I+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV
Sbjct: 354 CYLTTVGDDLEDIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKV 413

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL +
Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +R+ ++  WTLFSP +  DLHDLYG  F   YE+YE  A++G+IK+F+KI A  LWRKML
Sbjct: 474 ERMREDRDWTLFSPSDAPDLHDLYGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKML 533

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH
Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAH 593

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            AN + D  +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLG+MGFQ AL+ L
Sbjct: 594 IANGELDVQRLEQTVNTAVRMLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQL 653

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY+SPEAVE AD +ME +S+ AI AS  LA ERGAY S++GSLW QG+ PIDSI LL 
Sbjct: 654 GLPYSSPEAVEFADVAMEQLSYFAIRASATLAGERGAYESYEGSLWQQGILPIDSINLLK 713

Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E R E  L++N  +RL W  +++ + T GMRNSN MAIAPTATI+NI GVSQSI+P+YQN
Sbjct: 714 ENRREGDLSVNTNARLDWSPVRELIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP++LK  +ATA
Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATA 833

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  A
Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGA 893

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           T  EK+            PV  P         P  C+  D +CE CQ
Sbjct: 894 TGAEKT-----------APVAAPQ--------PQVCSIDDPDCEACQ 921


>gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
 gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
          Length = 943

 Score = 1107 bits (2864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/951 (56%), Positives = 690/951 (72%), Gaps = 43/951 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V SFD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVASFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFSRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR--AAQSHSKSDAPIAPKLK 146
           S   +HIE+IQDQVE +LM++G  K+ R YV+YR++R+D R  A ++H        P L+
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYRDQRADARKQAGENHH-------PTLQ 123

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +G L   + ++LE  V +A  GL+ ++ + ++ ET KN+Y+G+  SD+ T ++ ++
Sbjct: 124 ITDANGQLQPLDMRKLEATVTKAAEGLEGINVQAIIDETIKNLYNGVKASDIATTMMMAT 183

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RT IE+EPNY  VTAR L ++L    LT +      A    ++         ++++G++ 
Sbjct: 184 RTRIEQEPNYTYVTARLLRDELVATGLTFLGLSEDTAEGDALET--------FLKKGIEL 235

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+PQ FFMRV+M
Sbjct: 236 DLLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSM 295

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GL+L E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA
Sbjct: 296 GLSLNEANREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGA 355

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKG
Sbjct: 356 MRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKG 415

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E
Sbjct: 416 AVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSE 475

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDL G EF   Y +YE  A    + + +KI A  LWRKML+MLFETGHPWITFKD 
Sbjct: 476 TPDLHDLMGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDV 534

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D +KLA T++
Sbjct: 535 CNLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVLDREKLARTVK 594

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S  AV+ ADES
Sbjct: 595 TAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGSDAAVDFADES 654

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL
Sbjct: 655 MEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRL 714

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N 
Sbjct: 715 DWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINP 774

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQ
Sbjct: 775 YLVRALKDRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPRWIVDAASRRQ 834

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LN
Sbjct: 835 KWIDQAQSLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALN 892

Query: 925 AVP--------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
           AV                     V +      +  +P +C+ D  +CE CQ
Sbjct: 893 AVKPATVTAAPVAAVAQEVKPEVVAEDEGFGQAAPVPMACSIDNPDCEACQ 943


>gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           aquaeolei VT8]
 gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter
           aquaeolei VT8]
          Length = 949

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/933 (57%), Positives = 693/933 (74%), Gaps = 34/933 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + +QVIKRNG + SF+P+KIS A+ KAF+AVEG  A+ S R+ D +  +TEQ V  + + 
Sbjct: 46  QSLQVIKRNGTLVSFNPAKISVAVTKAFLAVEGDQAAGSARINDAVHRVTEQVVQAISRR 105

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PK 144
            K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA       D P+   P 
Sbjct: 106 LKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARQRAV------DEPVEAHPH 159

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG++   +   ++  VE+A +GL  ++   ++ +  +N+YDG+ E+++ +ALI 
Sbjct: 160 LTVKKADGSIAPLDLGLMKQQVEQASTGLDGINGDSLVEDALRNLYDGIEETEVLSALIM 219

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++R  IE+EP+Y+ VTAR LLE+LR E    +   P+     E   +YP+    +I  G+
Sbjct: 220 TARGRIEREPDYSAVTARLLLEQLRLETAEAL-DLPRSLPLAE---IYPQALSAFIHAGI 275

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  LL E++  FDL  L N LK ERD  F +LGLQ LYDRYFLH N +R+E+PQ FFMRV
Sbjct: 276 RYELLDEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLELPQVFFMRV 335

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL+E +   RA+EFY LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL GI+
Sbjct: 336 AMGLALREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGDDLEGIY 395

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
           GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 396 GAIRDNALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKR 455

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ ++  WTLFSP
Sbjct: 456 KGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDREWTLFSP 515

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V DLHDLYG  F   Y++YE  A++G+IK+F+KI A  LWRKMLT+LFETGHPWITFK
Sbjct: 516 SDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITFK 575

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH  + + D  +L  T
Sbjct: 576 DPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGELDVTRLERT 635

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L +PY+SPEAVE AD
Sbjct: 636 VNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVEFAD 695

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTS 742
            +ME +S+ A+ AS  LA ERGAY +++GSLW QG+ P+DS+GLL + R   +L++N  S
Sbjct: 696 VAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLNTNS 755

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           RL W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVV
Sbjct: 756 RLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVV 815

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +LK   LWD  M++DLKY DGS+  I+RIP +LK  +ATAFEIDP WL+E+A+R
Sbjct: 816 NPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAAR 875

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT  EK+        
Sbjct: 876 RQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT-------- 927

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
               PV+ P         P  C+ D  +CE CQ
Sbjct: 928 ---APVSAPQ--------PQVCSIDNPDCEACQ 949


>gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 916

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/946 (58%), Positives = 694/946 (73%), Gaps = 40/946 (4%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P +A+     +  +QVI+RNG + SF   KI+ A+ KAF+AV+G+ +  S  ++D++ +L
Sbjct: 4   PEVAF----SLAAMQVIRRNGDIVSFKSEKIAAALTKAFIAVKGEQSPLSSSLRDVVTHL 59

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TE  ++ L         +HIEDIQDQVE +LMQSG H + R YVLYRE+R+ +R   + S
Sbjct: 60  TETVISALTHRFPDGGSIHIEDIQDQVERALMQSGEHDVARAYVLYREKRAAMR---NTS 116

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           +  A +      ++D G     +   L  I   AC  L  VSS  + + T K++YDG+S 
Sbjct: 117 EKKAVLH-----LVDKGEKKVLDHTWLMNICHVACKNLTSVSSISIFNNTLKSLYDGMSL 171

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +D+ ++LI S+RT+IE EP Y KVTAR L   L  EVL    +  +    H+++     Y
Sbjct: 172 ADVYSSLILSARTMIEYEPEYNKVTARLLRLSLAYEVLD---QSTELMDLHQLKIATISY 228

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F ++IE G+ A LL   +  F+  YLA  L  ERD  F Y+G+Q LYDRYFLHI   RIE
Sbjct: 229 FPKFIELGINAGLLDPRLSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIE 288

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ FFMRVAMGLAL E +KE +A+EFYNLLS+F FM STPTLFNSGT  PQLSSCFLTT
Sbjct: 289 LPQLFFMRVAMGLALNEKKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTT 348

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DDL  IF +++ENA+L KY+GG+GNDWTPVR LG+ I GTNG+SQGVIPF+KVANDTA
Sbjct: 349 INDDLENIFQSIKENALLQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTA 408

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGGKRKGAVCAYLETWH+D+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +
Sbjct: 409 LAVNQGGKRKGAVCAYLETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLE 468

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N+ WTLFSP++V +LH+ +G EFE  Y +YE +   GEI +F+K+SAV LWRKMLTMLFE
Sbjct: 469 NSDWTLFSPNDVPELHEKFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFE 528

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKD CN+RSPQQH+GV+HSSNLCTEITLN+S EE AVCNLGSINL +H  N +
Sbjct: 529 TGHPWITFKDACNLRSPQQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGE 588

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +KL+ TI TA+R+LDNVIDIN +   KA  +N  HR IG+G+MGF   L+ L IPYA
Sbjct: 589 VDQNKLSQTIATALRMLDNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYA 648

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +AVE AD SME + ++   AS ELA+ERGAYS+F GSLWD+ + P+DS+ LL + R  
Sbjct: 649 SHQAVEFADRSMEIVCYYTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGG 708

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            L ++R+SRL WD LK R+   GMRNSNC+++APTATI+NI GVSQ I+P+YQNLYVKSN
Sbjct: 709 FLEVDRSSRLDWDALKDRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSN 768

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSG+FT+VN +LVN+LK+ +LWDEAM++DLKY DGS+  I+R+PD LKK++ATAFEIDP+
Sbjct: 769 MSGEFTIVNEYLVNDLKKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPV 828

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK- 913
           WLIE+ASRRQKWIDQAQSLNLYLD PSGKK+D IY+ AWL GLKTTYYLRS  A+ VEK 
Sbjct: 829 WLIEAASRRQKWIDQAQSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEKV 888

Query: 914 -----STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                S LK  D  L A  + DP                 ECE CQ
Sbjct: 889 GTNSQSVLKK-DTVLRACSIDDP-----------------ECEACQ 916


>gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. ADP1]
 gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ADP1]
          Length = 941

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/947 (57%), Positives = 691/947 (72%), Gaps = 37/947 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRNGEVATFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HKI R YV+YRE+RS+ R      +S A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKIARSYVIYREQRSNAR-----QQSGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L+  VE+A  GL+ +  + ++ ET KN+Y+G+  SD+ T ++ ++RT
Sbjct: 126 DAQGQLQPLDLDALKATVEKAAEGLEGIEIQAIVEETVKNLYNGVKVSDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE EPNY  VTAR L  +L  + L  +      A +  ++         ++++GV+  L
Sbjct: 186 RIEHEPNYTYVTARLLRNELVAKGLEFLGLSEDTAENDALET--------FLKKGVELEL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ LYDRYF+H +G R E+PQ FFMRV+MGL
Sbjct: 238 LDPELLNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A+ E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 AINEDNREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAIR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P EV 
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEVP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G+EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGEEFAQRYAYYESIAKEQNL-LHKKVRAQDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D DKLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ +++ Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERG YS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRNKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                              VT  +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPTTVAAPVAAVAQETKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941


>gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans A8]
 gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter
           xylosoxidans A8]
          Length = 976

 Score = 1105 bits (2857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/951 (56%), Positives = 687/951 (72%), Gaps = 36/951 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+P+KI+ A+ KAF+AV G   + S RV+++++NLT Q V  L+++  + 
Sbjct: 35  IIRRNGSVVGFEPNKIAIAMTKAFLAVNGGQGAASARVRELVENLTGQAVNALVRNRPNG 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPKL 145
              HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAA      +  K+ AP    L
Sbjct: 95  GTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRTQERAAAAAAADTQEKAAAPQEHVL 154

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            +  D G     +   L   +E A  GL + + ++ +L ET KN+YDG+   ++  + I 
Sbjct: 155 NVT-DAGVRRPLDLAELRATIEAAGEGLAEFIDTEAILKETVKNLYDGIPVDEVFKSAIL 213

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+R L+EK+P Y++VTAR LL  +R+EVL       ++ +   M   Y EYF  +I  G+
Sbjct: 214 SARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMAARYAEYFPTFIARGI 267

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  LL   +  +DL  L + L  +RD  F YLGLQ LYDRYFLHI G+RIE+PQ FFMRV
Sbjct: 268 EGGLLSPDLASYDLTKLGHALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRV 327

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL+E ++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+
Sbjct: 328 AMGLALREADRETRAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIY 387

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 388 DAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 447

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +   WTLFSP
Sbjct: 448 KGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSP 507

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +  DLHD YG+ FE AY  YE +   GE+K+F+K+ A+ LWRKML+MLFETGHPWITFK
Sbjct: 508 SDCPDLHDKYGRAFEEAYVGYEARVASGELKLFKKMPALNLWRKMLSMLFETGHPWITFK 567

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYD 619
           DPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH         + D+D
Sbjct: 568 DPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHD 627

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  T+  A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L ++ +PYAS  A
Sbjct: 628 KIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQSA 687

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738
           VE AD SME + +HA  AS  LA+ERG Y S++GSLW +G+ P D++ +L + R   + +
Sbjct: 688 VEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEV 747

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+
Sbjct: 748 DESSTLDWDTLRARIKKHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 807

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L+ ++ATAFE++P WL+E
Sbjct: 808 FTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRDLYATAFEVEPSWLVE 867

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS EKST +G
Sbjct: 868 CASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG 927

Query: 919 VDGKLNAVPVTDPNSSTHSLGIP---------SSCTSDT------ECEVCQ 954
             G+LNAV     ++S      P         + CT         ECE CQ
Sbjct: 928 --GELNAVSAGGQSTSAAVAAAPVLPEPEVLGAVCTMRPGDPGFEECEACQ 976


>gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 948

 Score = 1105 bits (2857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/952 (57%), Positives = 696/952 (73%), Gaps = 40/952 (4%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P +    +VI+RN  + +FD SKI  A+ KAF+AVEG   + S RV+D++  LTEQ +  
Sbjct: 17  PSEASHYKVIRRNNAMVNFDASKIHIAVTKAFLAVEGGSGAASARVRDLVSRLTEQVIEA 76

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L +        HIEDIQDQVE +LM++G H++ R YVLYREER+  R  Q+ +++ A + 
Sbjct: 77  LKRRQPGGGTFHIEDIQDQVELALMRAGEHEVARAYVLYREERARERRQQAAAETPADV- 135

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETA 201
           P +++   +G+  + +  RL  +++EACSGL   VS   +L  T KN+YDG+SE +L  A
Sbjct: 136 PVIRVSYPNGSQRALDMVRLRAVIDEACSGLGTAVSIDAILGNTVKNLYDGISEDELFQA 195

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I +SR LIE++P YA  +AR LL+++R EVL       + AT  EM   YP+YF  Y++
Sbjct: 196 PILASRVLIERDPAYAYASARLLLDRVRWEVLG------EAATQAEMTARYPQYFRDYLQ 249

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G++  L+   +  +DL  +   L+ ERD  F+YLG+QILYDRYFLH+   RIE+PQAF+
Sbjct: 250 TGIQNELIDPRLGQYDLERITAALRPERDLDFQYLGMQILYDRYFLHVRERRIELPQAFW 309

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMGLA+ E ++E  A+ FY +LSSF F+ STPTLFN+GT  PQLSSCFLTTV DDL 
Sbjct: 310 MRVAMGLAMNEVDRETHAIAFYEVLSSFDFVSSTPTLFNAGTLRPQLSSCFLTTVGDDLD 369

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+ A++ENAML+K+SGGLGNDWTPVR LG+ I GTNGKSQGV+PFLKV NDTAVAVNQG
Sbjct: 370 DIYEAIKENAMLSKFSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQG 429

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTL
Sbjct: 430 GKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVENNAMWTL 489

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP+E  DLHDL G  F   YE+YER AD G I++F++I A+ LWRKMLTMLFETGHPWI
Sbjct: 490 FSPNETPDLHDLTGSAFRERYEHYERMADAGGIELFKRIPAIHLWRKMLTMLFETGHPWI 549

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613
           TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL++H           
Sbjct: 550 TFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNAKEIAVCNLGSVNLVSHLRAVADAGALR 609

Query: 614 ---------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                       D +KL  TIR A+R+LDNVID+N + + KA+ SN  HR +GLGLMGF 
Sbjct: 610 EDSTPEELLAMMDGEKLHHTIRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFS 669

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL  + IPYAS  A+  AD S E IS+HAI AS +LA+ERG+Y SF GSLW QG+ PID
Sbjct: 670 DALLQMRIPYASAAALAFADISQEVISYHAIDASADLARERGSYQSFPGSLWSQGILPID 729

Query: 725 SIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           SI LLA  R+  + ++R+  L W  L+ +V+  GMRNSNC+AIAPTATI+NI GVSQ I+
Sbjct: 730 SIDLLAAGREHGVDVDRSQHLDWATLRSKVRG-GMRNSNCLAIAPTATISNIVGVSQGIE 788

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P YQNLYVKSN+SG+FTVVNS+LV++LK+ +LWDE M++DLKY DGS+  ++RIP  +K 
Sbjct: 789 PIYQNLYVKSNLSGEFTVVNSYLVHDLKRLELWDEVMVNDLKYFDGSVMPVDRIPASIKP 848

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++A AFE DP WL+E+A+RRQKW+DQAQSLNLY  +PSGKK+D IYR AW  GLKTTYYL
Sbjct: 849 LYANAFETDPEWLVEAAARRQKWLDQAQSLNLYFGQPSGKKIDEIYRLAWKRGLKTTYYL 908

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           RS  AT+ EKST++   G LNAV            G P +C   D  CE CQ
Sbjct: 909 RSLGATAAEKSTVQ--TGTLNAV----------VSGQPKACAIDDPTCEACQ 948


>gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           petrii DSM 12804]
 gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           petrii]
          Length = 974

 Score = 1104 bits (2856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/971 (55%), Positives = 698/971 (71%), Gaps = 39/971 (4%)

Query: 14  AFPSLAYPFPEKIKGVQ-----VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           A P      P    G Q     VI+RNG V  F+PSKI+ A+ KAF+AV G   + S RV
Sbjct: 13  AVPPSQTDVPADANGGQWASYNVIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARV 72

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +++++ L  Q V  L+++  +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+  
Sbjct: 73  RELVETLASQAVNALVRNRPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRAQE 132

Query: 129 RAAQSH--SKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           RAA +    K+   +A +  + ++D+G     +   L   +E A  GL + + ++ +L E
Sbjct: 133 RAAAAEVLEKTAPAVAQESHLNVVDNGVRRPLDLAALRATIEAAGEGLSEFIDTEAILKE 192

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EVL       ++ +
Sbjct: 193 TVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVS 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              M   Y EYF  +I+ G++  LL   + ++DL  +   L   RD  F YLGLQ LYDR
Sbjct: 247 QAGMATRYAEYFPTFIQRGIEGGLLDAKLAEYDLARVGAALDARRDLQFGYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLHI G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM STPTLFNSGT 
Sbjct: 307 YFLHIRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFNSGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV
Sbjct: 367 HSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+F+K+ A++
Sbjct: 487 IPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYLGYEAKVASGELKLFKKMPAIS 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGS 606

Query: 605 INLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH         + D+DKL  T+  A+R+LDNVIDIN + ++KAK SN  HR +G+G
Sbjct: 607 VNLVAHMKPAAAGGFELDHDKLKRTVGIAMRMLDNVIDINYYAVKKAKDSNERHRPVGMG 666

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS ELAQERG Y S++GSLW +G
Sbjct: 667 IMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGRYPSYEGSLWSRG 726

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P D++ +L + R   + ++ +S L W+ L+ R+K  GMRNSNC+AIAPTATI+NI GV
Sbjct: 727 ILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMRNSNCIAIAPTATISNIIGV 786

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P
Sbjct: 787 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVP 846

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLK
Sbjct: 847 SELRELYATAFEVEPRWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLK 906

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD---------PNSSTHSLGIPSSCTSDT- 948
           TTYYLR+  ATS EKST +G  G+LNAV             PN     + + + CT    
Sbjct: 907 TTYYLRTLGATSAEKSTGRG--GELNAVSAGQAATAVTAAAPNLPEPEV-LGAVCTMRPG 963

Query: 949 -----ECEVCQ 954
                ECE CQ
Sbjct: 964 DPGFEECEACQ 974


>gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii SDF]
 gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii]
          Length = 943

 Score = 1104 bits (2855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/949 (56%), Positives = 689/949 (72%), Gaps = 39/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       +++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L    L  +      A ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVKFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N  L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPCL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 --------PVTDP------------NSSTHSLGIPSSCTSDT-ECEVCQ 954
                   P   P            +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAPAVAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
 gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
          Length = 969

 Score = 1103 bits (2854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/892 (58%), Positives = 674/892 (75%), Gaps = 10/892 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D +  LT+  V  L++    
Sbjct: 27  QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTDGVVRALVRSRPD 86

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIED+QDQVE  LM++GH  + R YVLYRE R+  RA Q      A  A    ++ 
Sbjct: 87  GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKVAEVAAAAATKPVLH 146

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             D+G  +  N +RLE ++  +C  L  D+ S  +++ET +N+YDG+  +++  A I ++
Sbjct: 147 VTDNGQRVPLNQERLEALIVASCGNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P+Y  VTAR LL  + REV+    +  Q A   EMQ  Y +YF  ++++GV  
Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQAAYADYFPGFVQKGVDN 260

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQ+FFMRVAM
Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +
Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +
Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPAD 500

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP
Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  + + D+DKL  T+ 
Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL+ +   YAS  AVE ADE+
Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R   + ++R+++L 
Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N +
Sbjct: 741 WDALRAKIAKDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++ATAFE+ P WL+E+ASRRQK
Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           WIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ SAT++EKST++
Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912


>gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9]
 gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9]
          Length = 917

 Score = 1103 bits (2854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/926 (58%), Positives = 680/926 (73%), Gaps = 23/926 (2%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           I+R G V  F+  KI+ A+ KAF+AV+G+ A +S R++D +  LT+  V  L        
Sbjct: 12  IRRTGDVVPFNADKIALAMRKAFIAVQGESAGQSSRLRDEVARLTQDVVNALTGRRPEGS 71

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            + IEDIQDQVE +LM+SG H++ R YVLYRE R+  R A+  +     + P L +   D
Sbjct: 72  AIAIEDIQDQVELALMRSGEHEVARAYVLYREARAAERRARHAALGIDQL-PALHVTRPD 130

Query: 152 GTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           G+    + +RL   +E AC GL+ D     +L++T KN+YDG++E+++E ALI S+R  I
Sbjct: 131 GSRAPLDIERLGRQLEAACHGLEADTRPAALLADTLKNLYDGVTEAEVERALILSARQWI 190

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E++P Y KVTAR LL+ +RREV   V               Y E F + I+ G++A LL 
Sbjct: 191 ERDPAYDKVTARLLLDTIRREVAGGV------------AATYAEVFQQGIQRGMQADLLD 238

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             + DFDL  LA  L  ERD  F YLGLQ LYDRYFLH++G RIEMPQ FFMRVAMGLAL
Sbjct: 239 PRLADFDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLAL 298

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E +   +A+EFY+LLS F FM STPTLFN+GTRH QLSSC+LTT+ D L GIF A++EN
Sbjct: 299 NEADPTTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKEN 358

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAVCA
Sbjct: 359 AQLSKFAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 418

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +NA WTLFSP +V DL
Sbjct: 419 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDL 478

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HDL G+ F   Y  YE  A    ++  + + AV LWRKMLTMLFETGHPW+T+KD CN+R
Sbjct: 479 HDLTGRAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLR 538

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQQHVG VHSSNLCTEITLN+S +E AVCNLGS+NL  H      D +KLA T+R A+R
Sbjct: 539 SPQQHVGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMR 598

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + +EKA+ +N  HR +GLG+MGFQ  LHLL +PY S  AV  ADESME I
Sbjct: 599 MLDNVIDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELI 658

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDEL 749
           ++HA  AS ELA+ RG Y SF+GSLW QG+ P DS+ LL AE +  L ++R+SRL W  +
Sbjct: 659 AYHAYLASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAERQGYLEVDRSSRLDWTPV 718

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++R+   GMRNSNC+AIAPTATIANI GVS SI+P+Y+NL+VKSN+SG+FTVVN FLV +
Sbjct: 719 RERIARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQD 778

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+  LWD  M++DLKY DG +  IERIP D+K ++ATAF++DP WL+E+ASRRQKWIDQ
Sbjct: 779 LKRLGLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQ 838

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           AQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G  G+LNAVP+ 
Sbjct: 839 AQSLNLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVPI- 895

Query: 930 DPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                   +  P  C+ D  +CE CQ
Sbjct: 896 ----EGGMVAEPKFCSIDNPDCEACQ 917


>gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
 gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
          Length = 969

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/892 (58%), Positives = 675/892 (75%), Gaps = 10/892 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D +  LTE  V  L++    
Sbjct: 27  QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTEGVVRALVRSRPD 86

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIED+QDQVE  LM++GH  + R YVLYRE R+  RA Q  +   A  A    ++ 
Sbjct: 87  GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKAAEVAAAAAAKPVLH 146

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             D+G  +  + +RLE ++  +C  L  D+ S  +++ET +N+YDG+  +++  A I ++
Sbjct: 147 VTDNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P+Y  VTAR LL  + REV+    +  Q A   EMQ  Y +YF  ++++GV  
Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQAAYADYFPGFVQKGVDN 260

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQ+FFMRVAM
Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +
Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +
Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGQWTLFSPAD 500

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP
Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  + + D+DKL  T+ 
Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL+ +   YAS  AVE ADE+
Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R   + ++R+++L 
Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N +
Sbjct: 741 WDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++ATAFE+ P WL+E+ASRRQK
Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           WIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ SAT++EKST++
Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912


>gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
 gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
          Length = 969

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/892 (58%), Positives = 675/892 (75%), Gaps = 10/892 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D +  LTE  V  L++    
Sbjct: 27  QIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDTVNELTEGVVRALVRSRPD 86

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
               HIED+QDQVE  LM++GH  + R YVLYRE R+  RA Q  +   A  A    ++ 
Sbjct: 87  GGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAEQKKAAEVAAAAAAKPVLH 146

Query: 149 -MDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             D+G  +  + +RLE ++  +C  L  D+ S  +++ET +N+YDG+  +++  A I ++
Sbjct: 147 VTDNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLRNLYDGVPLAEVYKASILAA 206

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P+Y  VTAR LL  + REV+    +  Q A   EMQ  Y +YF  ++++GV  
Sbjct: 207 RTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---EMQTAYADYFPGFVQKGVDN 260

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQ+FFMRVAM
Sbjct: 261 ELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFMRVAM 320

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +
Sbjct: 321 GLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYES 380

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           ++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 381 IKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKG 440

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP +
Sbjct: 441 AVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGQWTLFSPAD 500

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWRKML+MLFETGHPWITFKDP
Sbjct: 501 APDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWRKMLSMLFETGHPWITFKDP 560

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  + + D+DKL  T+ 
Sbjct: 561 CNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHIKDGKIDHDKLRKTVN 620

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL+ +   YAS  AVE ADE+
Sbjct: 621 TAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDALYEMRTAYASQGAVEFADEA 680

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLP 745
           ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ LL + R   + ++R+++L 
Sbjct: 681 MEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLKLLEKARGGYVEVDRSAKLD 740

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N +
Sbjct: 741 WDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQY 800

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++ATAFE+ P WL+E+ASRRQK
Sbjct: 801 LVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYATAFEVSPEWLVEAASRRQK 860

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           WIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ SAT++EKST++
Sbjct: 861 WIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTTSATNIEKSTVQ 912


>gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AYE]
 gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|213156531|ref|YP_002318192.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
 gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB056]
 gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB058]
 gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB059]
 gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
 gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AYE]
 gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii
           ACICU]
 gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2]
 gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
          Length = 944

 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/950 (56%), Positives = 688/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       +++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L    L  +      A ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                                   + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944


>gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           citrulli AAC00-1]
 gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           citrulli AAC00-1]
          Length = 983

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/903 (58%), Positives = 668/903 (73%), Gaps = 15/903 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++ +  LT+  V  L++    
Sbjct: 36  QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQSVVRALMRSRPG 95

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QD VE SLM+ GHH++ R YVLYRE R+  RA Q H +   P  P L ++ 
Sbjct: 96  GGTFHIEDVQDNVELSLMRGGHHEVARAYVLYRERRTQERAHQQHDRQPVPSTPVLHVI- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  RL  +++ AC+ L  DV +  +++ET +N+YDG+   ++  A I ++RT
Sbjct: 155 DNGQRVPLDEARLRGLIDSACANLGADVHAAPIVAETLRNLYDGVPMDEVYKASILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR LL  + REVL       Q     +M   Y  YF ++I++GV   L
Sbjct: 215 LIEKDPDYTYATARLLLHTIVREVLG------QDVVPADMGPAYAAYFPQFIQKGVDNEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ +DLV L   L   RD  F+YLGLQ LYDRYFLH+  +RIE+PQ FFMRVAMGL
Sbjct: 269 LDPRLLQYDLVRLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 329 ALNEPDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V 
Sbjct: 449 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G +FE AY  YE +A RGEIK  R + A  LWRK+LTMLFETGHPWITFKD CN
Sbjct: 509 DLHDLFGADFEKAYVAYEEKAARGEIKPSRTVQATDLWRKILTMLFETGHPWITFKDACN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  +     + D+ KL  T
Sbjct: 569 VRSPQQHAGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKT 628

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I TA+R+LDNVIDIN + +EKA+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD
Sbjct: 629 ISTAMRMLDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFAD 688

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
            SME I ++A  AS ELAQERG YSS+ GSLWD+G+ PID++ LL + R   + ++R + 
Sbjct: 689 RSMEAICYYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGGYVEVDRAAT 748

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD L++++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N
Sbjct: 749 LDWDALRQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 808

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+  GS+  I+R+P D+K +++TAFE+ P WL+E+ASRR
Sbjct: 809 GYLVRDLKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRR 868

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT VE ST+     +L
Sbjct: 869 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 926

Query: 924 NAV 926
           NAV
Sbjct: 927 NAV 929


>gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 983

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/903 (58%), Positives = 668/903 (73%), Gaps = 15/903 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++ +  LT+  V  L++    
Sbjct: 36  QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVRETVDTLTQSVVRALMRSRPG 95

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QD VE SLM+ GHH++ R YVLYRE R+  RA Q H +   P  P L ++ 
Sbjct: 96  GGTFHIEDVQDNVELSLMRGGHHEVARAYVLYRERRTQERAHQQHDRQPVPSTPVLHVI- 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  RL  +++ AC+ L QDV +  +++ET +N+YDG+   ++  A I ++RT
Sbjct: 155 DNGQRVPLDEARLRGLIDSACANLGQDVHAAPIVAETLRNLYDGVPMDEVYKASILAART 214

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR LL  + REVL       Q     +M   Y  YF ++I++GV   L
Sbjct: 215 LIEKDPDYTYATARLLLHTIVREVLG------QDVVPADMGPAYAAYFPQFIQKGVDNEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ +DL  L   L   RD  F+YLGLQ LYDRYFLH+  +RIE+PQ FFMRVAMGL
Sbjct: 269 LDPRLLQYDLARLGAALDAGRDQQFDYLGLQTLYDRYFLHVRKTRIELPQCFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 329 ALNEPDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 389 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V 
Sbjct: 449 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSSVP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G +FE AY  YE +A RGEIK  R + A  LWRK+LTMLFETGHPWITFKD CN
Sbjct: 509 DLHDLFGADFEKAYVAYEEKAARGEIKPSRTLQATDLWRKILTMLFETGHPWITFKDACN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL+ H  +     + D+ KL  T
Sbjct: 569 VRSPQQHAGVVHSSNLCTEITLNTSDAETAVCNLGSVNLVRHLKDGPNGKELDHAKLRKT 628

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I TA+R+LDNVIDIN + +EKA+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD
Sbjct: 629 ISTAMRMLDNVIDINYYAVEKARNSNMRHRPVGLGLMAFQDSLYELRIPYASQAAVEFAD 688

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
            SME I ++A  AS ELAQERG YSS+ GSLWD+G+ PID++ LL + R   + ++R + 
Sbjct: 689 RSMEAICYYAYWASTELAQERGKYSSYPGSLWDRGILPIDTLDLLEKARGGYVEVDRATS 748

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD L++++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N
Sbjct: 749 LDWDALRQKIARDGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 808

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+  GS+  I+R+P D+K +++TAFE+ P WL+E+ASRR
Sbjct: 809 GYLVRDLKRLGLWDDVMVMDLKHFKGSLHPIDRVPQDVKALYSTAFEVAPTWLVEAASRR 868

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT VE ST+     +L
Sbjct: 869 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 926

Query: 924 NAV 926
           NAV
Sbjct: 927 NAV 929


>gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
 gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
          Length = 944

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/950 (56%), Positives = 687/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALKATVNRAAEGLEGIEVEAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L    L  +      A ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                                   + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944


>gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax
           ferrireducens T118]
 gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 981

 Score = 1101 bits (2847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/908 (58%), Positives = 674/908 (74%), Gaps = 22/908 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  LT+  +  L++   +
Sbjct: 36  QIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRESVDGLTQGVIHALMRSRPA 95

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+ GHH++ R YVLYRE+R+  RA Q  +   A  AP L ++ 
Sbjct: 96  GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYREKRTQERAQQLIAT--AATAPLLHVV- 152

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G  I  +  RL+ I+E AC+GL  D+  + +L+ET +N+YDG+   ++  A I ++RT
Sbjct: 153 DKGGRIVLDLARLKGIIESACAGLGADIKPEPILAETMRNLYDGVPMEEVYKASILAART 212

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR L   +  EVL       +     +M   Y +YF ++I++G+   L
Sbjct: 213 LIEKDPDYTYATARLLFHTIANEVLG------RDVVQADMAQAYVDYFPQFIKKGIDHEL 266

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E +  FDL  L   LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL
Sbjct: 267 LDERLQQFDLQRLGAALKAERDLKFDYLGLQTLYDRYFLHVGKARIELPQAFFMRVAMGL 326

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 327 SLGEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 386

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LGAHI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 387 ENALLSKFAGGLGNDWTRVRALGAHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 446

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV +   WTLFSP+ V 
Sbjct: 447 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMRRVMEKGQWTLFSPNNVP 506

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G +FE AY  YE +A RGEI+  R + A  LWRKMLTMLFETGHPWITFKD CN
Sbjct: 507 DLHDKFGADFEKAYVAYEEKAARGEIRPARTVQAADLWRKMLTMLFETGHPWITFKDACN 566

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------NQFDYD 619
           IRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  N            D+ 
Sbjct: 567 IRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKNAPAGSADGAKVLDHA 626

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TA+R+LDNVIDIN + ++KA+ +N  HR +GLG+M FQ +L+ L IPYAS  A
Sbjct: 627 KLQKTITTAMRMLDNVIDINFYAVKKARDANMRHRPVGLGVMAFQDSLYELRIPYASDAA 686

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738
           V  AD SME I ++A  AS ELA+ERG Y+S+KGSLWDQG+ PID++ +LA  R   + +
Sbjct: 687 VAFADTSMEAICYYAYWASTELARERGQYTSYKGSLWDQGILPIDTLDMLARERGGYVEV 746

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +R+S L W+ L+K++   GMRNSNC AIAPTATI+NI GV  SI+P + NL VKSN+SG+
Sbjct: 747 DRSSTLDWEALRKKIAKDGMRNSNCTAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 806

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FT++NS+LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D+K ++ATAFEI+  WL+E
Sbjct: 807 FTIINSYLVQDLKRLGLWDDVMVMDLKHFDGSLNPIDRVPADVKALYATAFEIETRWLVE 866

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+ SAT  EKST+  
Sbjct: 867 AAARRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWIRGLKTTYYLRTMSATHAEKSTVTA 926

Query: 919 VDGKLNAV 926
             G++NAV
Sbjct: 927 --GRMNAV 932


>gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
           denitrificans K601]
 gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 970

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/947 (57%), Positives = 680/947 (71%), Gaps = 33/947 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++  LT+  V  L++   S
Sbjct: 35  QIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGAASASVREVVDELTQAVVRALMRSRPS 94

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+  HH++ R YVLYRE R+  RA +       P  P L ++ 
Sbjct: 95  GGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKKEQL--LPQMPALYVL- 151

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D G  I  +  RL+ ++E AC+ L  DV +  + +ET +N+YDG+   ++  A I ++RT
Sbjct: 152 DKGQRIELDILRLQALIESACANLGSDVQAAPIAAETLRNLYDGVPMDEVYKASILAART 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y   TAR LL  + REVL       Q      M   Y   F ++I +GV   L
Sbjct: 212 LIEKDPGYTYATARLLLHTIVREVLG------QDVAPAGMAAAYAANFPQFIRKGVDNEL 265

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  L   LK  RD  F+YLGLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL
Sbjct: 266 LDPRLLDFDLQRLGQALKAGRDLQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGL 325

Query: 329 ALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AL+E    T    RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTVPD+L GI+
Sbjct: 326 ALREGDPKTTGSARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDELGGIY 385

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 386 ESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 445

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLE+WH+DVEEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP
Sbjct: 446 KGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSP 505

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V DLHDLYG+ FE AY  YE + D GE+++F+++ AV LWRKML+MLFETGHPWITFK
Sbjct: 506 SDVPDLHDLYGQAFERAYTAYEAKVDSGELQLFKRVPAVDLWRKMLSMLFETGHPWITFK 565

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  +   D+DKL  T
Sbjct: 566 DPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHLKDGAIDHDKLRKT 625

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLMGFQ AL+ L IPY+S  AV  AD
Sbjct: 626 VSTAMRMLDNVIDINYYAVDKARDSNLRHRPVGLGLMGFQDALYELRIPYSSDAAVTFAD 685

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
           ESME I ++A  AS ELA+ERG YSS++GSLW +G+ P+DS+ LLA+ R   + ++RT+R
Sbjct: 686 ESMEAICYYAYWASTELARERGTYSSYEGSLWSKGILPLDSLELLAKERGGYVEVDRTTR 745

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV+N
Sbjct: 746 LDWDALRSKITQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTVIN 805

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+  GS+  I+R+P ++K ++ATAFE+ P WL+E+A+RR
Sbjct: 806 QYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRVPQNVKALYATAFEVAPAWLVEAAARR 865

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT VE ST+     +L
Sbjct: 866 QKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMSTVN--TRQL 923

Query: 924 NAVPV-TDPNSSTH---------------SLGIPSSCTSDTECEVCQ 954
           NAV   TD  S                  +  +      D  CE CQ
Sbjct: 924 NAVSAGTDSQSGALNAAAAAAQTQAGALPATDVKFCAIDDPSCEACQ 970


>gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia
           acidovorans SPH-1]
 gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia
           acidovorans SPH-1]
          Length = 973

 Score = 1099 bits (2842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/896 (58%), Positives = 674/896 (75%), Gaps = 12/896 (1%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G Q+I+R+G V  F P KI+ A+ KAF+AV G   + S  V++ +  LT+  V  LL+  
Sbjct: 30  GYQIIRRSGDVVPFTPQKIAVALTKAFLAVRGAQGAASASVRETVDELTQAVVRALLRSR 89

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                 HIED+QDQVE  LM+ GHH + R YVLYR+ R+  RA Q  +   A  A     
Sbjct: 90  PGGGTFHIEDVQDQVELGLMRGGHHDVARAYVLYRDRRNQERAEQKKAAEAAAAAAAAPA 149

Query: 148 MM----DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202
            +    D+G  +  +  RL  ++E +C  L  D+ +  +++ET +N+YDG+   ++  A 
Sbjct: 150 PVLHVTDNGQRVPLDQARLLALIEASCRNLNADIQAAPIVAETLRNLYDGVPIEEVFKAS 209

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++RTLIEK+P+Y  VTAR LL  + REV+    +  Q A   ++Q  Y EYF  +I +
Sbjct: 210 ILAARTLIEKDPDYTYVTARLLLHTIVREVMG---RDVQPA---DIQAAYAEYFPGFIRK 263

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           GV   LL+  ++++DL  LA  +K ERD  F+YLGLQ LYDRYFLH+  +RIE+PQ+FFM
Sbjct: 264 GVDNELLNPELLNYDLPRLAAAIKAERDEQFDYLGLQTLYDRYFLHVRKTRIELPQSFFM 323

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTVPDDL G
Sbjct: 324 RVAMGLALQEEDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDG 383

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG
Sbjct: 384 IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 443

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLF
Sbjct: 444 KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 503

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDL+G  FE AY  YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T
Sbjct: 504 SPSDVGDLHDLFGAAFEHAYTAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 563

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  +   D+ KL 
Sbjct: 564 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 623

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ + I YAS  AVE 
Sbjct: 624 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 683

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD+SME I ++A  AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R   + ++R+
Sbjct: 684 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 743

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SRL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL VKSN+SG+FTV
Sbjct: 744 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFTV 803

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D+K ++ATAFE++P WL+E+A+
Sbjct: 804 INQYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKSLYATAFEVEPTWLVEAAA 863

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ SAT++EKST++
Sbjct: 864 RRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTTSATNIEKSTVQ 919


>gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
 gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
          Length = 944

 Score = 1098 bits (2839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/950 (56%), Positives = 687/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRISQLTEMVMNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L   +E A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DHNGQLQPLDLDALTATIETASEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L   V T +          E   L P     ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNEL---VGTGLEFLGLSTDTSENDALEP-----FLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYTHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 -------PV--------------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                  PV               + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPASVEAPVVAAQAVEEKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans C54]
          Length = 976

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/907 (57%), Positives = 671/907 (73%), Gaps = 19/907 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +I+RNG V  F+P KI+ A+ KAF+AV G   + S RV+++++ LT Q V  L+++    
Sbjct: 35  IIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVEQLTTQAVNALVRNRPGG 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----QSHSKSDAPIAPKLK 146
              HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAA    +   K DA     + 
Sbjct: 95  GTFHIEDIQDQVELALMRSGQHDVARAYVLYREKRTQERAAAAAAEGQQKVDAVPQENVL 154

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205
            + D G     +   L   +  A  GL + + S+ +L ET KN+YDG+   ++  + I S
Sbjct: 155 HVTDAGVRRPLDIAELRATIVAAGEGLAEFIDSEAILKETVKNLYDGIPVDEVFKSAILS 214

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R L+EK+P Y++VTAR LL  +R+EVL       ++ +   M   Y EYF  +I  G++
Sbjct: 215 ARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQDGMAARYAEYFPTFIARGIE 268

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             LL   +  +DL  L   L  +RD  F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVA
Sbjct: 269 GGLLSPDLASYDLTKLGKALNAKRDLQFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVA 328

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGLAL+ET++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI+ 
Sbjct: 329 MGLALRETDREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYD 388

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRK
Sbjct: 389 AIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRK 448

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +   WTLFSP 
Sbjct: 449 GAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPS 508

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +  DLHD YGK FE AY  YE +   G++K+F+K+ A+ LWRKML+MLFETGHPWITFKD
Sbjct: 509 DCPDLHDKYGKAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITFKD 568

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDK 620
           PCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH         + D++K
Sbjct: 569 PCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDHEK 628

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +  T+  A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L ++ +PYAS  AV
Sbjct: 629 IKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAV 688

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739
           E AD SME + +HA  AS  LA+ERG Y S++GSLW +G+ P D++ +L + R   + ++
Sbjct: 689 EFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVD 748

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+F
Sbjct: 749 ESSTLDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEF 808

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L++++ATAFE++P WL+E 
Sbjct: 809 TVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVEC 868

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS EKST +G 
Sbjct: 869 ASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG- 927

Query: 920 DGKLNAV 926
            G+LNAV
Sbjct: 928 -GELNAV 933


>gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
 gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
          Length = 988

 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/899 (57%), Positives = 673/899 (74%), Gaps = 13/899 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+I+RNG V  F+PSKI+ A+MKAF+AV G   + S  V++ +  LT+  V  L +    
Sbjct: 41  QIIRRNGAVVPFEPSKIAVALMKAFLAVHGAQGAASASVRETVDGLTQAVVRALTRSRPG 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+ GHH++ R YVLYR +R++ RA  +   +     P L +  
Sbjct: 101 GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRAKRAEERAQHAAQAAPQ--TPVLHVT- 157

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  ++ +  RL+ ++E AC+ L  DV +  +++ET +N+YDG+   ++  A I ++RT
Sbjct: 158 DNGQRVALDLNRLQRLIESACANLSADVKADPIVAETLRNLYDGVPLEEVYKAAILAART 217

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR L   + +EVL       +     EM+  Y +YF  +I++GV A L
Sbjct: 218 LIEKDPDYTYATARLLFHTIAKEVLG------RDVQPSEMKQAYADYFPGFIKKGVDAEL 271

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  ++ +DL  L   LK ERD  F+YLGLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL
Sbjct: 272 LNPELLQYDLKRLGAALKSERDQQFDYLGLQTLYDRYFLHVKKTRIELPQAFFMRVAMGL 331

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 332 ALNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIK 391

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 392 ENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAV 451

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           C YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP +  
Sbjct: 452 CTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGEWTLFSPSDAP 511

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL+G  FE AY  YE +A RGE+K  + + A+ LWRKML+MLFETGHPWITFKD CN
Sbjct: 512 DLHDLFGSAFEKAYVAYEAKAKRGELKPSKTVPAIDLWRKMLSMLFETGHPWITFKDACN 571

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  + + D++KL  TI TA
Sbjct: 572 VRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLKQHITDGKLDHEKLKKTISTA 631

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + ++KA+ SN  HR +GLG+M FQ AL+ + IPYAS  AV+ ADESME
Sbjct: 632 MRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMAFQDALYEMRIPYASDAAVQFADESME 691

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            I ++A  AS ELA+ERG YSS++GSLW +G+ P D++ LLA  R   + ++R++ L W+
Sbjct: 692 AICYYAYWASTELARERGVYSSYQGSLWSKGILPPDTLELLARERGGYVEVDRSATLDWE 751

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+K++   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FT++N +LV
Sbjct: 752 LLRKKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIINGYLV 811

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK+  LWDE M+ DLK+ DGS+  I+R+P D+K ++ATAFE++P WL+E+A+RRQKWI
Sbjct: 812 KDLKRLGLWDEVMVMDLKHFDGSLLPIDRVPQDIKALYATAFEVEPSWLVEAAARRQKWI 871

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           DQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+ SAT  EKST+    G+LNAV
Sbjct: 872 DQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTYYLRTTSATQAEKSTVAA--GRLNAV 928


>gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
 gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
          Length = 944

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/950 (56%), Positives = 685/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +              L  +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLEFL--------GLPTDTLEGDALETFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 -------PV--------------TDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                  PV               + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPASVEAPVVAAQAVEDKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 944

 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/950 (56%), Positives = 684/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATAR-----QQTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +              L  +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLEFL--------GLPTDTLEGDALETFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+F+GSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 -------PVT--------DPNSSTHSLG------IPSSCTSDT-ECEVCQ 954
                  PV          P +     G      +P +C+ D  +CE CQ
Sbjct: 895 KPASVEAPVVAAQAVEDKKPEAQVEEEGFTTAAPVPMACSIDNPDCEACQ 944


>gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella
           flavida DSM 17836]
 gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella
           flavida DSM 17836]
          Length = 806

 Score = 1093 bits (2826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/800 (62%), Positives = 633/800 (79%), Gaps = 9/800 (1%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
           + N +RL ++V EA +GL  V  +++L+ET  + YDG+ + ++E AL+ ++RT +E+EP 
Sbjct: 15  ALNVERLRLMVAEASAGLDAVDPELILTETLGSCYDGIPQHEVELALVMAARTYVEQEPQ 74

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y++  AR LL+++RREVL  V+ +P++A+  +M+  Y  YF RY+  G++A LL   +  
Sbjct: 75  YSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLLDHELAS 134

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           FDL  LA  ++ ERD  F +LGLQ LYDRY LHI+ +R E+PQAFF+RVAMG+ALKE ++
Sbjct: 135 FDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMALKEHDR 194

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E RA+EFY LLSSF FM STPTLFN+GT  PQLSSCFLTTV DDL GIF  ++ NA+LAK
Sbjct: 195 EARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRNNALLAK 254

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           YSGGLGNDWTP+RG+GA I GTNG+SQGV+PFLK+ANDTA+AV+QGGKRKGAVCAYLETW
Sbjct: 255 YSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVCAYLETW 314

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H+DVE+FL+LRKNTGD+RRRTHDMNTANW+PDLF++RV  +AGWTLFSPDEV  LHDLYG
Sbjct: 315 HVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPGLHDLYG 374

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
             F  AYE YER ADRGEI+VFR++ AV LWR+MLT+LFETGHPWITFKD CN+RSPQQH
Sbjct: 375 AAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNLRSPQQH 434

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            GVVHSSNLCTEITLN++ +ETAVCNLGS+NL+AH      D   L  T+RTAVR+LDNV
Sbjct: 435 DGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAVRMLDNV 494

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID+N +T  +++++N  HR +GLGLMGF  AL  L +PYAS  AV  AD SME +S+HAI
Sbjct: 495 IDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQLSYHAI 554

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVK 754
            AS +LA ERG Y ++ GSLW QG+ PIDS+ LL E R  +L ++ ++ L WD L+ +V+
Sbjct: 555 EASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDTSTTLDWDALRAKVR 614

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNSN +AIAPTATI+NICGVSQSI+P+Y NL+VKSNMSG+FTV N +LV +LK R 
Sbjct: 615 RDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLVADLKARG 674

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LWD+ M+ DLKYHDG +  IERIP DL+ ++ATAFEIDP WL+ +ASRRQKWIDQ+QSLN
Sbjct: 675 LWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWIDQSQSLN 734

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           LY+ EPSGK LD +YR AW  GLKTTYYLRS+SAT VEKSTL+G DG+LNAVPV +P ++
Sbjct: 735 LYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKSTLRGTDGRLNAVPV-EPVAA 793

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             ++        D +CE CQ
Sbjct: 794 VCAI-------DDQDCEACQ 806


>gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
 gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
          Length = 945

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/954 (56%), Positives = 684/954 (71%), Gaps = 47/954 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I+ LTE  +    +   
Sbjct: 11  LQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRIEQLTEMVLNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR---AAQSHSKSDAPIAPKL 145
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+RS+ R    A  H        P L
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARSYVIYREQRSEARKQLGAHHH--------PTL 122

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +I   +G L   +   L   V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ +
Sbjct: 123 QITDAEGKLKPLDLSALTAHVTKAAEGLEGIDVQAIVDETVKNLYNGVKESDISTTMMMA 182

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +RT IE+EPNY  VTAR L + L    L        K     +  +  +    Y+++G++
Sbjct: 183 TRTRIEQEPNYTYVTARLLRDDLVATGL--------KFLGLPVDTVEGDALETYLKKGIE 234

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+PQ FFMRV+
Sbjct: 235 LELLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVS 294

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGL+L E  +E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+G
Sbjct: 295 MGLSLNEENREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYG 354

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRK
Sbjct: 355 AMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRK 414

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P 
Sbjct: 415 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPS 474

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E  DLHDL G EF   Y +YE  A    + + +KI A  LWRKML+MLFETGHPWITFKD
Sbjct: 475 ETPDLHDLTGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKD 533

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            CN+RSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGSINL+ H      D +KLA T+
Sbjct: 534 VCNLRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTV 593

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +TAVR+LDNVIDIN + + +A+ SN  HR +G+G+MGFQ AL+ +++ Y S  AVE ADE
Sbjct: 594 KTAVRMLDNVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADE 653

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743
           SME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E    ++RT R
Sbjct: 654 SMEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQR 713

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N
Sbjct: 714 LDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVIN 773

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRR
Sbjct: 774 PYLVRALKERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRR 833

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G L
Sbjct: 834 QKWIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGAL 891

Query: 924 NAVPVT----------------DPNSSTHSLG------IPSSCTSDT-ECEVCQ 954
           NAV                    P +     G      +P +C+ D  +CE CQ
Sbjct: 892 NAVKPATVAAPVVAAAPVVEAQKPEAPAEEEGFAQAAPVPMACSIDNPDCEACQ 945


>gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 944

 Score = 1087 bits (2810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/950 (56%), Positives = 686/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    LT +        ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                                   +    T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 944

 Score = 1087 bits (2810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/950 (56%), Positives = 686/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASAR-----QQTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    LT +        ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                                   +    T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEVKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
 gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
          Length = 942

 Score = 1087 bits (2810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/948 (55%), Positives = 686/948 (72%), Gaps = 38/948 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S RV D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEVAAFDAEKISVAIGKAFLAVEGQQSADSSRVHDRITQLTEMVMNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+     Q+  ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRN-----QARQQTGAHHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +  +L+  +E+A  GL+ +  + ++ ET KN+Y+G+  SD+ T ++ ++RT
Sbjct: 126 DSKGQLQPLDMSKLQTTLEKASEGLEGIDVQAIIDETVKNLYNGVKASDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L    L  +           ++         ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELVATGLAFLGLSEDTPESEALEA--------FLKKGIELEL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LDAELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E ++E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 AVQEDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G  F   Y  YE  A    + + +KI A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H    + D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ L + Y S  AVE ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R +    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 NTLRTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIPD+LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 -------------------PVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                               V + +    +  +P +C+ D  +CE CQ
Sbjct: 895 KATAAAPVAAAPVVETKPETVAEEDGFAQAAPVPMACSIDNPDCEACQ 942


>gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
 gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
          Length = 943

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/949 (56%), Positives = 686/949 (72%), Gaps = 39/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R  Q++S       P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQ-QTNSNHH----PTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  + +A  GL+ +  + ++ ET KN+Y+G+ E+D+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATIAKAAEGLEGIDVQAIVDETVKNLYNGVKETDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +        +  ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENTALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            L E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 TLNEQNKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S  A++ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 --------PVTDP------------NSSTHSLGIPSSCTSDT-ECEVCQ 954
                   PV  P            +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAPVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
 gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
          Length = 943

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/949 (56%), Positives = 686/949 (72%), Gaps = 39/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTAR-----QQTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVAKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +        ++ ++         ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENNALEA--------FLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S  A++ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERG+YS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P--------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                                  + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 921

 Score = 1079 bits (2791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/931 (57%), Positives = 676/931 (72%), Gaps = 34/931 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  FD SKIS A+ KAF+AVEG  A+ S R+ D ++ +T Q +  + +  K
Sbjct: 20  LQVIKRNGALVGFDASKISVAVTKAFLAVEGDEAAGSARIHDSVERVTHQVMQAISRRLK 79

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PKLK 146
           +   VHIEDIQDQVE +LM++   K+ R YVLYRE  +  RA      S AP+   P L 
Sbjct: 80  AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREAHAQERA------SLAPVEAHPTLT 133

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   +G     +   +++ VE A   L+ +  + ++    +N+YDG++E ++ +ALI ++
Sbjct: 134 VKKANGEAAPLDLGLMKVQVERASQELEGIDGESLVEGALRNLYDGIAEEEVLSALIMTA 193

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R  IE+EP+Y+ VTAR LLE+LR E  T + K P      E   +YP+    +IE+G+  
Sbjct: 194 RGRIEQEPDYSAVTARLLLEQLRLETATAL-KLPLSLPLAE---IYPQALSTFIEQGIHY 249

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            LL E+M  FDL  L   LK ERD+ F +LGLQ LYDRYFL+  G R+E+PQ FFMRV+M
Sbjct: 250 ELLDEAMAAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWKGDRLELPQVFFMRVSM 309

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL+E +   RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL GI+GA
Sbjct: 310 GLALQEDDPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVQDDLEGIYGA 369

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NAML+K++GGLGNDWTPVR LG+HI GTNG SQGV+PFLKV NDTAVAVNQGGKRKG
Sbjct: 370 IRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKVVNDTAVAVNQGGKRKG 429

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+  +  WTLFSP++
Sbjct: 430 AVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRSDQDWTLFSPND 489

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             DLHDLYG  F   Y+ YE  A RGEI +F+ +SA  LWRKMLT+LFETGHPWITFKDP
Sbjct: 490 TPDLHDLYGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKMLTVLFETGHPWITFKDP 549

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL AH  N + D  +L  T+ 
Sbjct: 550 CNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAHVHNGELDVQRLERTVN 609

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR+LDNV+DIN + + +A+ SN  HR +GLGLMGFQ AL+ L++PY S EAVE AD +
Sbjct: 610 TAVRMLDNVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRLNLPYTSAEAVEFADVA 669

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
           ME IS+ AI AS  LA ERGAY +++GSLW +G+ PIDSI LL   R E  L++N  + L
Sbjct: 670 MEQISYFAIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLKANRREGDLSLNTDTLL 729

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN 
Sbjct: 730 DWTPVRELIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 789

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            LV +LK   LWD  M++DLKY DGS+  I+RIP  LK  +ATAFEID  WL+E+A+RRQ
Sbjct: 790 SLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATAFEIDARWLVEAAARRQ 849

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KW+DQAQSLNLY+ EPSGKKLD +Y+ +W  GLKTTYYLRS  AT  EK+          
Sbjct: 850 KWLDQAQSLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGATGAEKT---------- 899

Query: 925 AVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
             PV  P         P  C+ D  +CE CQ
Sbjct: 900 -APVAAPQ--------PQVCSIDEPDCEACQ 921


>gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 782

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/782 (65%), Positives = 611/782 (78%), Gaps = 3/782 (0%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           +S+  VL E  +N +DG+S  +L  A I ++R ++E EPNY++VTAR LL++LRRE LT 
Sbjct: 1   MSADAVLDEVRRNSFDGISADELAIAQIMAARIMVEAEPNYSQVTARLLLDRLRREALTY 60

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
           +   P  A   +M+  Y  YF  Y+  GV+   L   +  FDL  L   L  ERD +F +
Sbjct: 61  LAGLPDDADQEQMRERYAPYFRDYVARGVELGQLDPELASFDLDRLGAALLPERDMSFGF 120

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGLQ LYDRYFLH +G+R E+PQAFFMRVAMGLAL+E ++E RAVEFY LLSSF FMCST
Sbjct: 121 LGLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLALREDDREARAVEFYRLLSSFDFMCST 180

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTLFNSGT  PQLSSCFLTTV DDL+GIF ++  NAML+KY+GGLGNDWTPVRG+GAHI 
Sbjct: 181 PTLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISNNAMLSKYAGGLGNDWTPVRGIGAHIR 240

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GTNG+SQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR
Sbjct: 241 GTNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 300

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           THDMNTANW+PD FM+RV  +  WTLFSPDE  DLHDLYG  F   Y  YER A+RGEIK
Sbjct: 301 THDMNTANWVPDEFMRRVEADGTWTLFSPDETPDLHDLYGTAFAERYRAYERAAERGEIK 360

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V+R++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +
Sbjct: 361 VYRQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSRD 420

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E AVCNLGS+NL  H   +  D+++L  T RTAVR+LDNVIDIN +TI +A++SN  HR 
Sbjct: 421 EVAVCNLGSVNLARHVTADGIDHERLERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRP 480

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLGLMGF  AL    IP +S  AVE AD SME IS+HAISAS +LA ERG Y SF+GSL
Sbjct: 481 IGLGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSL 540

Query: 716 WDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W QGV PIDS+ LL + RD  + ++RT    W  L++RV+ +GMRNSN MAIAPTATIAN
Sbjct: 541 WSQGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMRNSNVMAIAPTATIAN 600

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           ICGV QSI+P Y+NLYVKSNMSGDFTVVN  LV +LK   LWDE M++DLK+HDGS+  I
Sbjct: 601 ICGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPI 660

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
            RIP +LK+++ATAFE++P WL+E+A+RRQKWIDQAQSLNLY+  PSG+KLD +YR AW 
Sbjct: 661 SRIPGELKELYATAFEVEPRWLVEAAARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWR 720

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD--PNSSTHSLGIPSSCTSDTECEV 952
            GLKTTYYLRS SAT VEKSTL+G DGKLNAVP T   P   T ++   +    D +CE 
Sbjct: 721 QGLKTTYYLRSTSATHVEKSTLRGTDGKLNAVPTTPVAPVVPTAAVDGAACSVDDPDCEA 780

Query: 953 CQ 954
           CQ
Sbjct: 781 CQ 782


>gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase, subunit alpha [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 882

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/765 (66%), Positives = 606/765 (79%), Gaps = 1/765 (0%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           R+E +V EAC+ L  VS++ VL+E  +  Y G+S++++E AL+ ++R+ +E +P+Y+ V 
Sbjct: 55  RIEHVVAEACARLTGVSAEKVLTEARRGFYPGISDAEVELALVMAARSFVEVDPDYSYVA 114

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           AR LL+KLRRE LT +   P  A   EM   Y  Y   Y+  G+    L  ++  FDL  
Sbjct: 115 ARLLLDKLRREALTFISGAPDAAGQSEMGERYAAYLAAYVGRGIDLGQLDPALAKFDLAR 174

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L   L+ ERD  F +LG+Q LYDRYFLH +  R E+PQAFFMRVAMGLAL E ++E RA+
Sbjct: 175 LGAALRPERDEQFTFLGIQTLYDRYFLHSDEVRYELPQAFFMRVAMGLALNEDDREARAI 234

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EFY LLSSF FM STPTLFNSGT   QLSSCFLTTV DDL  IF  +  NAML+KYSGGL
Sbjct: 235 EFYELLSSFDFMASTPTLFNSGTVRAQLSSCFLTTVGDDLQAIFHGISNNAMLSKYSGGL 294

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           GNDWTPVRGLG+HI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID+E
Sbjct: 295 GNDWTPVRGLGSHIRGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDIE 354

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLDLRKNTGD+RRRTHDMNTANW+PDLFM+RV Q   WTLFSPDEV DLHD YG EF  
Sbjct: 355 EFLDLRKNTGDERRRTHDMNTANWVPDLFMQRVEQGGSWTLFSPDEVPDLHDKYGAEFAE 414

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           AY +YE +A  G IKV + + AV LWR+MLTMLFETGHPWITFKDP N+RSPQQHVGVVH
Sbjct: 415 AYAHYEAEAAAGRIKVSKTLPAVDLWRRMLTMLFETGHPWITFKDPSNLRSPQQHVGVVH 474

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SSNLCTEITLN+S++E AVCNLGS+NL  H   +  D ++L  T+RTAVR+LDNVID+N 
Sbjct: 475 SSNLCTEITLNTSADEVAVCNLGSVNLAQHVGPDGLDAERLRRTVRTAVRMLDNVIDVNF 534

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +TI +A+++N  HR +GLGLMGFQ AL  L  P+AS  AV  ADESME IS++AI AS+E
Sbjct: 535 YTIPEARRANMRHRPVGLGLMGFQDALFKLRTPFASDGAVSFADESMELISYYAIEASME 594

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMR 759
           LA ERG+Y SF+GSLW +GV PIDS+ LLAE RD +L M+R   L WD L++RVKT GMR
Sbjct: 595 LAAERGSYESFEGSLWSRGVLPIDSLRLLAESRDGDLDMDRGETLDWDSLRERVKTTGMR 654

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NSN MAIAPTATIANI GVSQSI+P Y+NLYVKSNMSGDFTVVN +LV +LK R LWD+ 
Sbjct: 655 NSNVMAIAPTATIANITGVSQSIEPVYRNLYVKSNMSGDFTVVNPYLVRDLKARGLWDDD 714

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           M+S LK HDGS+G I+R+P DLK ++ATAFE+DP WL+++ SRRQKWIDQAQSLNLY+  
Sbjct: 715 MVSALKMHDGSLGAIDRVPADLKALYATAFEVDPEWLVDAGSRRQKWIDQAQSLNLYMAA 774

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           PSG+KLD +YR+AW  GLKTTYYLRS+SAT VEKSTLKG DG+LN
Sbjct: 775 PSGRKLDSLYRRAWRSGLKTTYYLRSQSATHVEKSTLKGTDGRLN 819


>gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
 gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
          Length = 929

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/929 (56%), Positives = 673/929 (72%), Gaps = 29/929 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG + +F PSKI  A+ KAF+AVEG  A+ S R+ D +  +T+Q V  + +  K
Sbjct: 27  LQVIKRNGNLVNFTPSKIGVAVTKAFLAVEGDQAAGSARINDAVHRVTDQVVQAISRRLK 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA   H   +A   P L + 
Sbjct: 87  AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERAL--HEPVEA--HPTLTVK 142

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G  +  +   ++  V+ A  GL  + ++ ++ E+ +N+Y+G+ E+++ +ALI ++R 
Sbjct: 143 QAGGRTVPLDLGLMKQQVDNAAFGLDGIDAESLVEESIRNLYNGIDEAEVLSALIMTARG 202

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EP+Y+ VTAR LLE+LR E +T +    +  T   +  +YP+    +I  G++  L
Sbjct: 203 RIEREPDYSAVTARLLLEQLRLESVTAL----KLDTSLSLADVYPQALSTFINAGIRYEL 258

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E+M  FD+  L   LK ERD  F +LGLQ LYDRYFLH    R+E+PQ FFMRVAMGL
Sbjct: 259 LDEAMAAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGL 318

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L+E +   RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL  I+G+++
Sbjct: 319 SLREDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIR 378

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR +GA I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 379 DNAMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ Q+  WTLFSP++  
Sbjct: 439 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFSPNDAP 498

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG  F   Y++YE  A  G+I++F+ I A  LWRKMLT+LFETGHPWITFKDPCN
Sbjct: 499 DLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCN 558

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH  N + D  +L  T+ TA
Sbjct: 559 LRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGELDVKRLERTVDTA 618

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L + Y SP+AVE AD +ME
Sbjct: 619 VRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAME 678

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--AEVRDELAMNRTSRLPW 746
            +S+ AI AS  LA ERGAY S++GSLW Q + PIDSI  L  A +  +L++N  SRL W
Sbjct: 679 QLSYFAIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVNTDSRLDW 738

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             ++  +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN  L
Sbjct: 739 APVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSL 798

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK   LWD  M++DLKY+DGS+  IERIP +LK  +ATAFEID  WL+E+ASRRQKW
Sbjct: 799 VRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQKW 858

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           +DQ QSLNLY+ +PSGKKLD +Y+ AW  GLKTTYYLRS  AT   +           A 
Sbjct: 859 LDQGQSLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGANE----------QAA 908

Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
            V  P         P  C+ D  +CE CQ
Sbjct: 909 TVAAPQ--------PQVCSIDEPDCEACQ 929


>gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
 gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
          Length = 839

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/746 (66%), Positives = 608/746 (81%), Gaps = 3/746 (0%)

Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           GL+DV +  +L++T +N++DG+++ ++ TALI S+RT+IEK+PNY++V+AR LL+ +R E
Sbjct: 2   GLEDVDADKILNDTLRNVFDGVAKKEVATALIMSARTMIEKDPNYSQVSARLLLDSMREE 61

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
            LT +      AT  EMQ  YPEYF  YI   V+  LL   M +FDL  L   L  ERD 
Sbjct: 62  ALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELLDGEMHNFDLERLGQALLPERDQ 121

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            F YLGLQ LYDRYF+H + G R E+PQAFFMRVAMGLA+ E ++E+RA+EFY LLSSF 
Sbjct: 122 GFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGLAINEVDREERAIEFYTLLSSFD 181

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           FM STPTLFNS T  PQLSSC+LTTVPDDL GIF A++++AML+K++GGLGNDWT VR L
Sbjct: 182 FMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVKDDAMLSKFAGGLGNDWTRVRAL 241

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLE+WH+D+EEFL+LRKNTG
Sbjct: 242 GAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLESWHLDIEEFLELRKNTG 301

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           DDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP++V DLHDL GK+FE AY  YE +AD
Sbjct: 302 DDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVDDLHDLVGKKFEKAYTAYEAKAD 361

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
            GEIK+F+++ AV LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITL
Sbjct: 362 SGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITL 421

Query: 591 NSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           N+S  E AVCNLGS+N+  H     + D  KL  TI+TA+R+LDNVID N +++ +A++S
Sbjct: 422 NTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKTAMRMLDNVIDYNYYSVPQARRS 481

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR +GLG+MGFQ AL+   + Y S EAVE AD +ME +S++AIS+SV+LA+ERGAYS
Sbjct: 482 NIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAMEAVSYYAISSSVDLAEERGAYS 541

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           SF GSLW +G+ PIDSI +LAE R D L ++R+  + WD L++RV+  GMRNSNCMAIAP
Sbjct: 542 SFPGSLWSRGILPIDSIDILAEHRGDFLQVDRSQTMDWDSLRQRVRESGMRNSNCMAIAP 601

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV ELK R+LWD+ M++DLKY+D
Sbjct: 602 TATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVKELKARNLWDDVMVNDLKYYD 661

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GS+  IERIPDDL++I++TAFEID  WL+E+ SRRQKWIDQ QSLNLY+ EPSGKKLD +
Sbjct: 662 GSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQKWIDQGQSLNLYMSEPSGKKLDNL 721

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914
           Y+ AW  GLKTTYYLRS  AT VEK+
Sbjct: 722 YKLAWARGLKTTYYLRSMGATHVEKT 747


>gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora viridis DSM 43017]
 gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 815

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/800 (64%), Positives = 621/800 (77%), Gaps = 5/800 (0%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
           +R+  +V EA +GL D S++ VL+E  +N+YDG+   +L  A I ++RTL+E+EPNY+ V
Sbjct: 16  ERVHRVVREAVAGLPDTSAEAVLAELKRNVYDGIRADELALAQIMAARTLVEREPNYSFV 75

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR LL+ LR E  + +  +P++  + EM   Y +YF  Y+  G+  +LL E +  FDL 
Sbjct: 76  AARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLLDEELAAFDLD 135

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEK 337
            LA  L+ ERD     LGLQ LYDRY L     G R E+PQAFFMRVAMGLA++E E++ 
Sbjct: 136 ILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMGLAIREPERDT 195

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           RAVEFY LLS+  FM STPTLFN+GTR PQLSSCFLTTV DDL  IF   + NA+LAKYS
Sbjct: 196 RAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGYRNNALLAKYS 255

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GGLGNDWTPVRGLGAHI GT GKSQGV+PFLK+ANDT VAVNQGGKRKGA CAYLETWHI
Sbjct: 256 GGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGAACAYLETWHI 315

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV  +A WTLFSPDEV DLHDLYG  
Sbjct: 316 DIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEVPDLHDLYGTA 375

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           F   Y  YE+ AD G+I+VFR++SA  LWR+MLTMLFETGHPWITFKDPCN+RSPQQH G
Sbjct: 376 FAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAG 435

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           VVHSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D + L  T+RTAVR+LDNVID
Sbjct: 436 VVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRTAVRMLDNVID 495

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN +T+ +A++SN  HR +GLGLMGF  AL  L IP AS EAVE AD SME +S+HAISA
Sbjct: 496 INFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYHAISA 555

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKT 755
           SVELA ERGAY SF GSLW +G+ P+DS+ LLAE R  DEL ++ +S L WD L++RV+T
Sbjct: 556 SVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLDWDALRERVRT 615

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +GMRNSN +AIAPTATI+NICGV QSI+P + NL+VKSNMSG+FTVVN +LV +LK+R L
Sbjct: 616 VGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPYLVRDLKRRGL 675

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WDE M+ +LK HDG +G IER+P++LKK++ATAFE D  WL+++A+RRQKWIDQAQSLNL
Sbjct: 676 WDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQKWIDQAQSLNL 735

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           YL EPSG+ LD +YR AW  GLKTTYYLRSR+AT VEKSTL+G DG+LNAV    P    
Sbjct: 736 YLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNAVAPAVPAVPA 795

Query: 936 HSLGIPSSC-TSDTECEVCQ 954
            + G  ++C   D +CE CQ
Sbjct: 796 DASGAAAACRIDDPDCEACQ 815


>gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ATCC 17978]
          Length = 885

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/900 (56%), Positives = 655/900 (72%), Gaps = 43/900 (4%)

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           T TR L    S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       ++
Sbjct: 5   TFTRRL---PSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASAR-----KDTN 56

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +   P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+
Sbjct: 57  SNHHPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDI 116

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            T ++ ++RT IE+EPNY  VTAR L ++L    L  +      A ++ ++         
Sbjct: 117 ATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAENNALEA-------- 168

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ
Sbjct: 169 FLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQ 228

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ D
Sbjct: 229 LFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGD 288

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAV
Sbjct: 289 DLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAV 348

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  
Sbjct: 349 NQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGE 408

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGH
Sbjct: 409 WTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGH 467

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D 
Sbjct: 468 PWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDR 527

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S E
Sbjct: 528 EKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDE 587

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
           AV  ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E   
Sbjct: 588 AVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMF 647

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+S
Sbjct: 648 EVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLS 707

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W+
Sbjct: 708 GEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWI 767

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+
Sbjct: 768 VDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTI 827

Query: 917 KGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
               G LNAV                        + +  T +  +P +C+ D  +CE CQ
Sbjct: 828 N--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 885


>gi|221124254|ref|XP_002159508.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit [Hydra magnipapillata]
          Length = 846

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/840 (59%), Positives = 630/840 (75%), Gaps = 14/840 (1%)

Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
           M+ GHH+I R YVLYRE R+  RA Q    ++AP AP + ++ D+G  +  +  +L+  +
Sbjct: 1   MRGGHHEIARAYVLYRERRTQERAKQV--ATEAPAAPVIHVI-DNGQRVPLDLAQLQFRI 57

Query: 167 EEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           E ACSGL  DV +  +L+ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L 
Sbjct: 58  ETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAARTLIEKDPDYTYATARLLF 117

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             + REVL       +     +MQ  Y +YF  +I+ G+ A LL E +  FDL  L + L
Sbjct: 118 HTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQFDLKRLGSAL 171

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           K  RD  F+YLGLQ LYDRYFLH   +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +
Sbjct: 172 KAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDREARAIEFYEV 231

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT
Sbjct: 232 LSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWT 291

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+L
Sbjct: 292 RVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLEL 351

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G EFE AY  Y
Sbjct: 352 RKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAY 411

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E +A RGEIK  R + A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLC
Sbjct: 412 EEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLC 471

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           TEITLN+S  ETAVCNLGS+NLL H  +   D++KL  TI TA+R+LDNVIDIN + ++K
Sbjct: 472 TEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNVIDINYYAVKK 531

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD+SME IS++A  AS +LA+ER
Sbjct: 532 ARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAYWASTDLARER 591

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G Y S+KGSLWD+GV P D++ +LA  R   + ++R+S L W+ L+ ++   GMRNSNC+
Sbjct: 592 GKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWNALRNKIAADGMRNSNCV 651

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTV+NS+LV +LK+  LWD+ M+ DL
Sbjct: 652 AIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDL 711

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           K+ DGS+  I+R+P ++K+++ATAFE++  WL+E+A+RRQKWIDQAQSLN+Y+   SGKK
Sbjct: 712 KHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSLNIYMAGASGKK 771

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           LD  Y+ AWL GLKTTYYLR+ SAT  EKST   V   L+A+        +   G PSS 
Sbjct: 772 LDETYKLAWLRGLKTTYYLRTMSATHAEKST---VTAGLDALQFRHRPDQSVEAGKPSSV 828


>gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
 gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 949

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/948 (55%), Positives = 670/948 (70%), Gaps = 40/948 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-------ASRSIRVQDIIKNLTEQ 78
           +    VI+RNG    FD SKI+ A+ KAF+  +  G        S S   ++ ++ LT+ 
Sbjct: 6   VGAYMVIRRNGETVPFDASKIASALAKAFL-YDAHGNLYRPGVVSLSAAQRERVEQLTQA 64

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               L +  +S+   HIE +QDQVE +LM++G H++ R YVLYRE  S  RA        
Sbjct: 65  VCDALGRRGESSAF-HIEALQDQVELALMRAGEHEVARGYVLYREMASQKRAP------- 116

Query: 139 APIAPKL----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           AP+A +        M +G +  F+      IVE   +GL+ VS+  +  E  +N+Y+   
Sbjct: 117 APVAGRYDHIKSYRMRNGGVAPFDPSFWIAIVESVVAGLESVSAADLFEEAVRNLYNNAK 176

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLE-KLRREVLTTVYKKPQKATHHEMQCLYP 253
           E ++E ALI ++RT IE EP Y K  AR +L  +L  +V        +  T  E+   Y 
Sbjct: 177 EEEIENALILAARTKIEMEPAYTKAAARLVLALQLGHDVFG------KAITFDELASSYG 230

Query: 254 EYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           E F R I+E V A LL + M   FDL  LAN ++ ERD  ++YLG+Q LYDRY LHI+G 
Sbjct: 231 EAFARGIKEAVSAELLADDMTRGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGK 290

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAF MRVAMGLA  E E+E RA+EFY +LS+F +M STPTLFN+G+   QLSSC+
Sbjct: 291 RIELPQAFLMRVAMGLARNEVEREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCY 350

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTT+ DDL GI+  L+ENA+L+K++GGLGNDWT VR LG++I GTNGKSQG++PFLKV N
Sbjct: 351 LTTISDDLEGIYDGLKENALLSKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVN 410

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 411 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 470

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V + A WTLFSP++V DLHDLYG +FE  Y++YE  AD G +K F++  AV LWRKML +
Sbjct: 471 VHEGADWTLFSPNDVPDLHDLYGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGL 530

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  
Sbjct: 531 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLV 590

Query: 613 NN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D+ KL  TIR A+R+LDNVID+N + + KA+ SN  HR +GLG+MG+Q AL
Sbjct: 591 KQADGSVALDHVKLRRTIRIAMRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDAL 650

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           ++L IP+ S  AVE +D SME I ++A  AS +LA ERG Y S+ GSLW +G+ P DSI 
Sbjct: 651 YVLGIPFGSEAAVEFSDRSMEAICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSID 710

Query: 728 LLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           LL + R E  L ++R+S + WD L++++   GMRNSNC+AIAPTATI+NI GVS S +P 
Sbjct: 711 LLVQERGEGYLDVDRSSSMDWDALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQ 770

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +QNLYVKSN+SG+FT+VN +LV +LK+  +WDE M+SDLK++DGS+  I+R+P D+K  +
Sbjct: 771 FQNLYVKSNLSGEFTLVNEYLVADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARY 830

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFEI+P W +E+ +RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+
Sbjct: 831 ATAFEIEPSWSVEAGARRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRT 890

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +ATSVEKST+    G LNAV    P+S   +     S   D E  VC
Sbjct: 891 IAATSVEKSTVP--LGTLNAVA---PSSQMATQQTTQSSEPDVEGRVC 933


>gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
 gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
          Length = 942

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/947 (54%), Positives = 663/947 (70%), Gaps = 29/947 (3%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQT 79
           F   +  + ++KR+G V  FDP +I  A+ KAF A  GK    ++  +D   I+ +T   
Sbjct: 11  FDAHLSALSIVKRDGRVVPFDPHRIRAAVEKAFRADRGKNVGEALSSEDRAAIEEITSAV 70

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           V++          + +E IQD VE +LM+ G+H + + Y+LYR +R   R  ++      
Sbjct: 71  VSKSAALAGRGERLEVERIQDLVELTLMELGYHTVAKRYILYRADRGRARTIKNRE---- 126

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDL 198
                + ++   G  +  +   +   + EAC GL++  S + +  ET + +YD + E D+
Sbjct: 127 --GVSIHMIDKQGRKVPLDLAWIHRTLMEACRGLEESCSWRELAEETVRGLYDEIKEEDV 184

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             A+I ++R+ +EKEP Y  V AR +L K+  E L+ V    + A +H+       YF  
Sbjct: 185 VQAMILTARSWVEKEPAYTYVAARLMLGKIYEEALSLVPSIHETAEYHKA------YFPS 238

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           YI+ GVK   L   +++F+L  LA  L+ ERD  F YLGLQILYDRY LH    RIE PQ
Sbjct: 239 YIDFGVKIGRLSPRLLEFNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETPQ 298

Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+MRVAMGLAL E E +E  A+ FY+ LS F FM STPTLFNS T HPQLSSC+L TV 
Sbjct: 299 YFWMRVAMGLALNEKEDRELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTVE 358

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GIF  + +NA L+K++GGLGNDWT VR  G+ I GTNGKSQGVIPFLKVANDTAVA
Sbjct: 359 DDLDGIFKVISDNARLSKWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAVA 418

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGA+CAYLETWH+D+E+FL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV QN 
Sbjct: 419 VNQGGKRKGALCAYLETWHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQNG 478

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP +V DLH LYGK+FE  Y  YE+ ADRGEIK+F+++SAV LWRKMLT+LFETG
Sbjct: 479 SWTLFSPSDVPDLHHLYGKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFETG 538

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
           HPWITFKDP NIRSPQ HVGV++SSNLCTEI LN+S EE AVCNLGSINL AH   + + 
Sbjct: 539 HPWITFKDPSNIRSPQDHVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGEI 598

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  KL  TIR AVR+LDNVIDIN + I +A+ +N  HR +GLG+MGFQ  L++  IPY S
Sbjct: 599 DEKKLQETIRIAVRMLDNVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYGS 658

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +AVE+AD  ME +S+HAI +S ELA+ERG+YS+FKGS WD+G+ PID+I LL E R+  
Sbjct: 659 EKAVEVADRLMEMVSYHAILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQREGF 718

Query: 737 A-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++R+    WD ++K++K  G+RNS  +AIAPTATI+NI GV QSI+PSY+NLYVKSN+
Sbjct: 719 VEVDRSQTKDWDYVRKKIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSNL 778

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  +N +LV +LK+ +LWD+ MI DLKY+DGS+  IERIP +LK+++ATAFEIDP +
Sbjct: 779 SGDFISINPYLVADLKKLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPYF 838

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +IE ASRRQKWID  QSLNLY+DEPSG K+  +Y   W  GLKTTYYLRSR+AT+VEKST
Sbjct: 839 IIECASRRQKWIDMGQSLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKST 898

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGI--------PSSCTSDTECEVCQ 954
           L   D     +      S + S  I         ++C+ D ECE CQ
Sbjct: 899 L---DVNARGIQPRWMKSKSPSANIRVERNEKEKNACSLDPECESCQ 942


>gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 921

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/927 (55%), Positives = 661/927 (71%), Gaps = 19/927 (2%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97
           SFD  +I  AI KAF A    GA +++   +Q +   +T   ++ +L   +    V IE 
Sbjct: 2   SFDGERIRLAITKAFRAELLLGADQALPEEIQKVTNGITSAVISSILSLTRDE-PVPIEK 60

Query: 98  IQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLIS 156
           IQD VE  LMQ G+H++ R Y+LYREER   RA  ++   ++  +   L +   DGT   
Sbjct: 61  IQDLVEKELMQEGYHQVARGYILYREERKRARAFKETAIPANEQVKSTLYVTYPDGTKSP 120

Query: 157 FNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
            N+++++  +E AC+  +++ + + ++ E  K++YDG+   +L  + IFS+R+ IEKEP 
Sbjct: 121 LNTQKMQSKMEHACADFKELCNPQELIEEMLKHLYDGVLFKELNESAIFSARSKIEKEPA 180

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  V AR LL+ +  EV        Q+    E+  L+  +F +YI +GV A+ L   +  
Sbjct: 181 YNYVAARLLLQDIYNEVFE------QECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 234

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE- 334
           +DL  LA +L   RD  F Y+G+Q LYDRY +H+   RIE PQ F+MRVAMGLAL E E 
Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           +E+RA+EFYN+LS FHF+ STPTLFNSG+ HPQLSSC+L+TV DDL  IF  + +NA L+
Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGG+GNDWT +R  GA IHGTNG +QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLET
Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D+E+F++LRKNTGD+RRRTHDMNTANWIPDLFMKRV + + WTLF+P +  DLHDLY
Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YER A  G+IK+F+ I A+ LWRKM+TMLFETGHPW+TFKDP NIRSPQ 
Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           H GVVHSSNLCTEI LN+S  ETAVCNLGSINL AH   +  D   LA TIRTA+R+LDN
Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDIN +  ++A++SN  HR +GLGLMGFQ AL+   I Y S EAVE AD SME IS+HA
Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKRV 753
           I AS ELA+ERG YSS++GS W QG+ PIDSI LL  E +  L M+RTS+  W  ++K +
Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKGYLHMDRTSKKDWSVVRKEI 714

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           +  GMRN N MAIAPTATIA+I G+SQSI+P++  LYVKSN+SG+F V+N +LV +LK+R
Sbjct: 715 QKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKER 774

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           DLW++ M+ +LKY+DGS+  IE+ P+DLK ++ TAFEI+P WLIE ASRRQKWID  QSL
Sbjct: 775 DLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQSL 834

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL----KGVDGK-LNAVPV 928
           NLY++ P G+KL  +Y  AW  GLKTTYYLRS++AT VEKSTL    KG+  + + +   
Sbjct: 835 NLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRSA 894

Query: 929 TDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           +          IP SC+ S  ECE CQ
Sbjct: 895 SGSIRVERDSSIPKSCSLSGDECESCQ 921


>gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
 gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
          Length = 926

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/935 (56%), Positives = 669/935 (71%), Gaps = 34/935 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+KR+G   SFD  +I RA+ KAF A       A  S  + + I+ LT   V    +  +
Sbjct: 15  VVKRDGRRVSFDAERIRRALEKAFRATLELPADAPLSAELSEEIEALTGAVV----RWCR 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD+VE +LM++G + + R Y+LYRE R++ R  Q           +L   
Sbjct: 71  DRAEVSVEEIQDEVERTLMRAGRYAVARRYILYREARAEARRRQ-----------QLTYR 119

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT   F  + L   +E AC GL DV  ++V  E  + +Y G+ E +L+ ALI ++RT
Sbjct: 120 RADGTEAPFPHEALRARIEAACDGLDDVDPELVREELLRTVYPGIPEDELDRALILAART 179

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EP+Y  V AR LL+ L REV    + +P   +     C     F  Y+E GV+   
Sbjct: 180 HIEREPDYTYVAARLLLDALYREV----FGRPIPPSEQAEACR--AGFRAYLEHGVRLGR 233

Query: 269 LHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
           L E ++  FD+  LA  L  ERD  F +LGLQ LYDRY LH   G R E+PQ  +MRVAM
Sbjct: 234 LDERLLRTFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAM 293

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E +   RA++FY LLSSF FM STPTLFN+GT HPQLSSC+LTTV DDL  IF A
Sbjct: 294 GLALAEDDPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKA 353

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGVIPFLK+ NDTAVAVNQGGKRKG
Sbjct: 354 IRDNALLSKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKG 413

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE WH+D+EEFL+LR+NTGD+RRRTHDMNTA WIPDLFM+RV +   WTLFSPDE
Sbjct: 414 AVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDE 473

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHDLYG+ F   YE+YER+A+ G I+ +R+I AVALWRKML+MLFETGHPW+TFKDP
Sbjct: 474 VPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDP 533

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTI 625
           CNIRSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGSINL+AH     + D +KL  TI
Sbjct: 534 CNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTI 593

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTAVR+LDNVID+N + I +A+ SN  HR IGLGLMGFQ  L+   + YAS  AVE+ADE
Sbjct: 594 RTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADE 653

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRL 744
            MEFI++ A  AS +LA ERGAY +FKGS WD+G+ P+D++ LL AE  + + + RT+RL
Sbjct: 654 FMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPRTARL 713

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+++++  GMRNSN +AIAPTATIANICGVS SI+P+Y+NLYVKSN+SG+FT +N 
Sbjct: 714 DWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNP 773

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK R LWD+ M+ DLKY+DGS+  I+RIP +LK  + TAFEI+P WLIE A+RRQ
Sbjct: 774 YLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQ 833

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL----KGVD 920
           KWIDQ+QSLNLYL EPSG+KL  +Y+ AW +GLKTTYYLR+ +AT +EKSTL    +G+ 
Sbjct: 834 KWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQ 893

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE-CEVCQ 954
            +   +    P+S         +C+ D E CE CQ
Sbjct: 894 PRW--MKSRSPSSDIVVRRDGPACSPDDESCEACQ 926


>gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
 gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
          Length = 973

 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/948 (53%), Positives = 661/948 (69%), Gaps = 29/948 (3%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQ 85
            ++V KR+G + SFD  +I  AI KAF A  G    + +   ++D +K+++E  + ++  
Sbjct: 34  ALEVRKRDGRIISFDVGRIHYAIGKAFRAEIGVADGQELENSLEDQVKSISEAVIDQIES 93

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              S   V +E IQD VE  LM+ GH  + R Y+LYREE + +RA ++       I P++
Sbjct: 94  RPFSRDGVDVESIQDAVEIQLMRHGHFSVARRYILYREEHAKLRALRAADSDGNLIPPRI 153

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            +  +DG    F++ RL   V  A  GL Q+ S++ ++ ETY+++YDG++  ++  A+I 
Sbjct: 154 NVKQEDGAKEPFDATRLRRRVYSAVRGLEQNCSAEELVEETYRSLYDGITPQEIYRAMIL 213

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA--THHEMQCLYPEYFCRYIEE 262
           +SR+ IE++P+Y KV AR +L  +  E +  ++ K   A  T  E        F  YI  
Sbjct: 214 ASRSRIERDPDYDKVAARLMLMVIYNEAIGRLHPKEDIAEVTRRE--------FSTYIST 265

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G++A  L E + DFDL  ++  L+ ERD AF YLGLQ +YDRY LHI+G RIE PQ F+M
Sbjct: 266 GIEAGRLAERLRDFDLEKISAALRPERDAAFPYLGLQTIYDRYLLHIDGRRIETPQYFWM 325

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLA  E  KE+RA+EFYN+LS+F F  +TPTLFNSGT HPQLSSC+L+TV DDL  
Sbjct: 326 RVAMGLAWNEENKEERAIEFYNILSTFRFTSATPTLFNSGTLHPQLSSCYLSTVDDDLEH 385

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  + +NAML+K++GGLGNDWT +R   AHI GTNG+SQGVIPFLKV NDTA+AVNQGG
Sbjct: 386 IFKVVSDNAMLSKWAGGLGNDWTNIRATNAHIKGTNGQSQGVIPFLKVVNDTAIAVNQGG 445

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC+YLE+WH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV +NA WTLF
Sbjct: 446 KRKGAVCSYLESWHLDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRENADWTLF 505

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SPDE  DLHDL G +F+  YE YE+ AD G++++FR++ A  LWRKMLT LFETGHPWIT
Sbjct: 506 SPDETPDLHDLCGSKFQARYEEYEKLADEGKMRLFRRLPANELWRKMLTRLFETGHPWIT 565

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KDP N+RSPQ HVGVVHSSNLCTEI LN+S +E AVCNLGSINL+AH  N + D +KL 
Sbjct: 566 WKDPSNVRSPQDHVGVVHSSNLCTEILLNTSKDEIAVCNLGSINLVAHIRNGELDLEKLQ 625

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+ TA R+LDNVIDIN +   +AK SN  HR +G+GLMGFQ AL  L + YAS EAVE 
Sbjct: 626 ETVTTAARMLDNVIDINYYPTGEAKTSNARHRPVGMGLMGFQDALSSLGVSYASQEAVEF 685

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
           AD SME IS+ AI AS +LA ERG Y ++ GS WD+G+ PIDS+ +L + R   + ++R+
Sbjct: 686 ADRSMEAISYFAILASSQLAAERGTYETYAGSKWDRGILPIDSLDILEQERGLPIEVDRS 745

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L W  ++  V+  GMRNSN MAIAPTATI+ I GVSQSI+P+Y+NL+VKSN+SG+F  
Sbjct: 746 STLDWQVVRDSVREHGMRNSNVMAIAPTATISTIVGVSQSIEPTYKNLFVKSNLSGEFPQ 805

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N  +V +LK   LWD  M+  +KY+DG +  I+R+PD LK  + TAFE+D  WLIE  +
Sbjct: 806 LNIRMVQDLKAEGLWDSDMVEAIKYYDGELTEIDRVPDHLKLRYLTAFEVDSKWLIECGA 865

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK---- 917
           RRQKWID  QSLNLY+ +PSG+KL  +Y  AW +GLKTTYYLR+ SAT VEKST+     
Sbjct: 866 RRQKWIDMGQSLNLYMAQPSGRKLHDMYMLAWNVGLKTTYYLRTLSATQVEKSTIDVNRF 925

Query: 918 GV------DGKLNAVPVTDPNSSTHSLG-----IPSSCTSDTECEVCQ 954
           G+      +   +A    D   +   L       P +C  D +CE CQ
Sbjct: 926 GIQPRWMKNASASADIRVDRGDAAEILDELPPEQPKACNLDGDCESCQ 973


>gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase, subunit alpha [Planctomyces
           brasiliensis DSM 5305]
 gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 953

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/893 (55%), Positives = 648/893 (72%), Gaps = 13/893 (1%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQHNK 88
           V KR+G + SFD ++I RA+  AF A      S+ +   V  +I+ ++++   ++     
Sbjct: 10  VRKRDGRIASFDMNRIGRAMENAFRAELNLADSQPLDEDVISVIRQISDEVGNQIAPSAS 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS--KSDAPIAPKLK 146
           S   V +E++QD VE  LM+ GH+++ R Y++YR E + +RA +       + P   +  
Sbjct: 70  SRQGVDVEELQDAVEMLLMKHGHYRVARRYIVYRAEHAKLRALRGEEGFADEGPERVQTN 129

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +DDGTL+ F+  R+   ++ AC GL+D+ S++ +  E  K++YDG++  ++  A+I +
Sbjct: 130 VTLDDGTLVPFDPNRIMTKLQLACRGLEDICSAEDLHEEVLKSIYDGITTKEIYRAMILA 189

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           SR+ IE++P Y KV  R +L+ +  + L +    P+K     +  +Y   F  YI +G+ 
Sbjct: 190 SRSRIERDPAYDKVAGRLMLDVIYHDALGSA-PSPKK-----LASVYRHQFEHYIIDGIA 243

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           A  L   + DF+L  +A+ L+  RD  F+YLGLQ +YDRY +HI+G RIE PQ F+MRVA
Sbjct: 244 AERLSPGLRDFNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVA 303

Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLA+ E E KE+RA++FYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV DDL  IF
Sbjct: 304 MGLAVNEGEQKEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIF 363

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA L+K++GGLGNDWT +R   AHIHGTNG+SQGVIPFLKV NDTAVAVNQGGKR
Sbjct: 364 KVISDNAKLSKWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKR 423

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+TANWIPDLFMKRV  N  WTLFSP
Sbjct: 424 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSP 483

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV DLHDL GKEFE  Y  YE+ A+ GE+ + RK++AV LWRKMLT LFETGHPWIT+K
Sbjct: 484 DEVPDLHDLTGKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWK 543

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP N+RSPQ H GVVHSSNLCTEI LN+S  ETAVCNLGSINL  H  +   +   L  T
Sbjct: 544 DPSNVRSPQDHCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEET 603

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN +  E+A  +N  HR +G+GLMGFQ AL  + + Y  PEAVE AD
Sbjct: 604 VFTAMRMLDNVIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFAD 663

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
            SME IS+ AI AS +LA ERG YSS++GS WD+G+ PID++ LL E R + + ++R+S 
Sbjct: 664 RSMEAISYFAILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARGQAIEVDRSSS 723

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD ++K V   GMRNSNCMAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+FT VN
Sbjct: 724 LDWDVVRKSVAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVN 783

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           S LV ELK R LWD  M+  LKY+DG++ +I+R+P D+K+ + TAFE+DP WL+E A+RR
Sbjct: 784 SVLVTELKSRGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARR 843

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           QKW+D  QSLNLY+  P+GK+L  +Y  AW  GLKTTYYLR+ +AT VEKST+
Sbjct: 844 QKWLDMGQSLNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTV 896


>gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
 gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
          Length = 949

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/949 (53%), Positives = 656/949 (69%), Gaps = 34/949 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMA----VEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           V KR G    FD S I RAI  AF A     + +     IR++  I  + E     +   
Sbjct: 10  VTKRGGRTAPFDASLIGRAISNAFRAELNLADNQPLDDEIRME--IPEMVESVANEIASA 67

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS------HSKSDAP 140
             +   V +E IQD VE  LM+ GH++I R Y++YR ER+ +RA +        S+S   
Sbjct: 68  ASTDAGVEVEKIQDVVEMMLMRRGHYRIARRYIVYRAERAKLRALRGSSDLVEESESIKS 127

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLE 199
             P+  +++ DGT + F+  R+   + +AC GL+ D S++ +L E  ++++DG+S  +L 
Sbjct: 128 TTPRFHVVLTDGTKVPFDEARILARLSDACRGLEGDCSAEALLEEVMRSIFDGISVEELY 187

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A+I ++RT IE++P Y  V +R +L+ +  + L      P     +E+  LY + F ++
Sbjct: 188 RAMILAARTRIERDPAYDTVASRLMLKIIYNDALGNA---PSDV--NELNQLYVDRFPKF 242

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E+G+ A+ L   +  FDL  +A  L+ +RD  F+YLGLQ ++DRY LHI G RIE PQ 
Sbjct: 243 LEDGIAAKRLTPDLHKFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQY 302

Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           F+MRV+MGLA++E  +   RA+EFYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV D
Sbjct: 303 FWMRVSMGLAIQEEGDATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVND 362

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  IF  + +NA L+K++GGLGNDWT +R   +HI GTNG+SQGVIPFLKV NDTAVAV
Sbjct: 363 DLDHIFKCVADNAKLSKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAV 422

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVC+YLETWH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFM+RV ++A 
Sbjct: 423 NQGGKRKGAVCSYLETWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAE 482

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSP++V DLHDLYG +FE  Y  YER  + GEIK+FR+ISAV LWRKMLT LFETGH
Sbjct: 483 WTLFSPNDVPDLHDLYGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGH 542

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWIT+KD  N+RSPQ HVGVVHSSNLCTEI LN+S +ETAVCNLGS+NL  H  + Q D 
Sbjct: 543 PWITWKDASNLRSPQDHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDL 602

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             L  T+RTA+R+LDNVIDIN +   +A+ SN  HR +GLG+MGFQ AL    I YAS +
Sbjct: 603 GMLEETVRTAMRMLDNVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQ 662

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELA 737
           AVE AD SME IS+ AI AS ELA ERG Y S+ GS WD+G+ PID++ L  + R   + 
Sbjct: 663 AVEFADASMEAISYFAILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIPVE 722

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++R +RL W  ++  +   GMRNSN MAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG
Sbjct: 723 VDRQARLDWQVVRNSIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSG 782

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT VN  LV++LK  DLWD  M+  LKY+DGS+  IERIPD+LK  + TAFE++P W I
Sbjct: 783 EFTQVNRQLVDDLKAVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTI 842

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E A+ RQKWID  QSLNLYL EPSGKKL  +Y  AW  GLKTTYYLR+ +AT VEKST+ 
Sbjct: 843 ECAAHRQKWIDMGQSLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVD 902

Query: 918 ----GVDGKL--NAVPVTD------PNSSTHSLGIPSSCTSDTECEVCQ 954
               G+  +   NA    D      P ++  + G   SC  D +CE CQ
Sbjct: 903 VNKFGIQPRWMKNASASGDIQVDREPAATMVTPG--ESCNLDGDCEACQ 949


>gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Weiss]
 gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum MopnTet14]
 gi|14195148|sp|Q9PL93|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
            muridarum Nigg]
          Length = 1047

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/941 (52%), Positives = 641/941 (68%), Gaps = 22/941 (2%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + VI+R G    F+P KIS A+ KAF A +         V++ +  LT++ V  + + 
Sbjct: 116  QSLSVIRRCGTTVHFNPMKISAALEKAFRATDRIEGMTPDFVREEVNALTQKIVAEIEER 175

Query: 87   -NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAP 143
             ++    + IE IQD VE  LM  GH+   + Y+LYRE R+ VR  +   +   +AP   
Sbjct: 176  CSQQDSRIDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNRVEDQIVEEAPSEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETAL 202
              +++  DG+       +L   +  ACS   + +   +L++  + N Y G+ ES++  A 
Sbjct: 236  TFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++ +Y ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALD------RSRGDEDLEQVYRDHFKRYIME 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LAN +   RD  F Y+G+Q LYDRYF H +G R+E PQ F+M
Sbjct: 350  GDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLALKE +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 410  RVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNGKSQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGDDRRR HD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++++K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  ++  D +KL+
Sbjct: 650  FKDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R  D L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            + R  W+ ++  ++  GMRN   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IER+PD +K I  TAFEI+P W++E A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS    VD
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF---VD 1006

Query: 921  GKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
                 +      + + S GI          C+ +  CEVCQ
Sbjct: 1007 INKRGIQPRWMKNKSASAGIVVERASKTPVCSLEEGCEVCQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   +++ I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLENSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+YV+YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYINGLQDVARDYVVYRDDRKAHREKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT + FN  ++   +E+A
Sbjct: 118 LSVIRRCGTTVHFNPMKISAALEKA 142


>gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 434/Bu]
 gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
 gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2tet1]
 gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis 434/Bu]
 gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
          Length = 1047

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/942 (52%), Positives = 640/942 (67%), Gaps = 24/942 (2%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   -NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPIAPK 144
             ++    + IE IQD VE  LM  GH+ I + Y+LYRE R+ VR  +    S +  IA +
Sbjct: 176  CSQQDRRIDIEKIQDIVEQQLMVVGHYAIAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 145  -LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETAL 202
              +++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++  A 
Sbjct: 236  AFEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F RYI 
Sbjct: 296  IMAARANIEKEPDYALVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKRYIA 348

Query: 262  EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+
Sbjct: 349  EGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFW 408

Query: 322  MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL 
Sbjct: 409  MRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLV 468

Query: 382  GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQG
Sbjct: 469  NIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQG 528

Query: 442  GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            GKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+NTA+WIPDLF KR+ Q   WTL
Sbjct: 529  GKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTL 588

Query: 502  FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            FSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+M+FETGHPW+
Sbjct: 589  FSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWM 648

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL
Sbjct: 649  TFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKL 708

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE
Sbjct: 709  SETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVE 768

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMN 739
             AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+
Sbjct: 769  FADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMD 828

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+F
Sbjct: 829  TSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 888

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            T+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE 
Sbjct: 889  TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIEC 948

Query: 860  ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS    V
Sbjct: 949  ASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF---V 1005

Query: 920  DGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
            D     +      + + S GI          C+ +  CE CQ
Sbjct: 1006 DINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 748

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/752 (62%), Positives = 571/752 (75%), Gaps = 22/752 (2%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           AR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  LL+  + +FDL  
Sbjct: 1   ARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEK 59

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+
Sbjct: 60  LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAI 119

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGL
Sbjct: 120 EFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGL 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           GNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+E
Sbjct: 180 GNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIE 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+ 
Sbjct: 240 EFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQE 299

Query: 521 AYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            YE YE   +  G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVV
Sbjct: 300 RYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVV 359

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           HSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  AVR+LDNVIDIN
Sbjct: 360 HSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDIN 419

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS 
Sbjct: 420 YYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASC 479

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIG 757
           +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L W  ++ RV+  G
Sbjct: 480 DLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-G 538

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD
Sbjct: 539 IRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWD 598

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+
Sbjct: 599 SVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYI 658

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
              SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          +
Sbjct: 659 AGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSA 716

Query: 938 LGIP--------------SSCTSD-TECEVCQ 954
           +  P               +C  D  +CE CQ
Sbjct: 717 ITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 748


>gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-EC]
 gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-LC]
          Length = 1053

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 122  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 181

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 182  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 238

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 239  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 298

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F R
Sbjct: 299  LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 351

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ
Sbjct: 352  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 411

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 412  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 471

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 472  NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 531

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 532  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 591

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 592  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 651

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 652  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 711

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 712  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 771

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 772  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 831

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 832  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 891

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 892  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 951

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 952  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1010

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1011 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1053



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 13  KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 72

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 73  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 123

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 124 LSVVRRCGTVVHFNPMKISAALEKA 148


>gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9768]
 gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11074]
 gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9301]
          Length = 1047

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D/UW-3/CX]
 gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/Jali20/OT]
 gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276]
 gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276s]
 gi|7388066|sp|O84834|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis
            D/UW-3/CX]
 gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/Jali20/OT]
 gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11222]
          Length = 1047

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/TZ1A828/OT]
 gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/TZ1A828/OT]
          Length = 1047

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAIEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  L++ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis A/HAR-13]
 gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis A/HAR-13]
          Length = 1047

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/945 (52%), Positives = 640/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  L++ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLIDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            felis Fe/C-56]
 gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis
            Fe/C-56]
          Length = 1045

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/944 (52%), Positives = 641/944 (67%), Gaps = 34/944 (3%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI--------IKNLTEQTV 80
            V V++R+G +  F+P KIS A+ KAF A        ++++ D+        I NLT + V
Sbjct: 118  VSVMRRDGNLVRFNPMKISAALEKAFRA--------TLKITDVLLQEILSEINNLTNKIV 169

Query: 81   TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               L        + IE IQD VE  LM +GH+ + + Y+LYRE RS +R  +        
Sbjct: 170  EETLAKCSREQTIDIEAIQDIVETQLMIAGHYDVAKNYILYREARSRIREHKQEIAVQEE 229

Query: 141  IAPKL-KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDL 198
            I  ++  ++  DGT    N  +L      AC      ++   L++  + N Y G+ ES++
Sbjct: 230  IVEEVYDVVKSDGTTYQINKAQLTEKFVWACRRFPKTTNPHTLADMAFANFYSGIKESEI 289

Query: 199  ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
              A I ++R  IEKEP+YA V A  LL+ + +E +            H+      +YF +
Sbjct: 290  VLACIMAARANIEKEPDYAYVAAELLLDVVCQEAIGKSIMDADLVEAHK------QYFKQ 343

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI +G + RL +  + ++DL  LA  L   RD  F Y+G+Q LYDRY     G R+E  Q
Sbjct: 344  YILDGDQYRL-NPRLKEYDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQ 402

Query: 319  AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             F+MRV+MGLAL E E K   A+ FYNLLSSF +  +TPTLFNSG RH QLSSC+L+TV 
Sbjct: 403  IFWMRVSMGLALNEGEDKTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQ 462

Query: 378  DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
            DDL  I+  + +NAML+K++GG+GNDWT VR  G+ I GTNGKS GVIPF+KVANDTAVA
Sbjct: 463  DDLAHIYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVA 522

Query: 438  VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            VNQGGKRKGA C YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q  
Sbjct: 523  VNQGGKRKGATCVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKG 582

Query: 498  GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             WTLFSPD+V  LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETG
Sbjct: 583  TWTLFSPDDVPGLHEAYGFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETG 642

Query: 558  HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            HPWITFKDP NIRS Q H GVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N   D
Sbjct: 643  HPWITFKDPSNIRSAQDHAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDID 702

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
             + L  TI  A+R+LDNVIDIN +  ++A  +N THRA+GLG+MGFQ AL+ L+I YASP
Sbjct: 703  EEMLGETISIAIRILDNVIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASP 762

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DE 735
            EAVE AD+S E I+++A+ +S  LA+ERG YSS+KGS WD+G  PID+I LL E R  D+
Sbjct: 763  EAVEFADKSSELIAYYALLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDK 822

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            L M+ + R  W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+
Sbjct: 823  LLMDTSCRKDWAPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNL 882

Query: 796  SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            SG+FT+ N +L+ +LKQ  LWD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P W
Sbjct: 883  SGEFTIPNVYLIEKLKQLGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEW 942

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            LIE ASRRQKW+D  QS+NLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS 
Sbjct: 943  LIECASRRQKWLDMGQSVNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSF 1002

Query: 916  LKGVDGKLNAVPVTDPNSSTHSLGIPSS-----CTSDTECEVCQ 954
            +      +    + + ++ST S+ +  +     C+ +  CE CQ
Sbjct: 1003 IDINKRGIQPRWMKNKSAST-SIVVERTRETPVCSLEEGCESCQ 1045



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    F+  +I +A+  AF        +  +   ++  I ++T Q V  ++Q  +
Sbjct: 11  IVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDTSPLPKDLEKSISSITRQVVNEVVQKIR 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  SG   + R Y++YR++  + R    HS S         +M
Sbjct: 71  EGQVVTVERIQDMVENQLYVSGMQDVARNYIIYRDQHKERRKGSWHSVS---------VM 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSG---LQDVSSKIVLSETYKNMYDGLSESDL 198
             DG L+ FN  ++   +E+A      + DV  + +LSE   N+ + + E  L
Sbjct: 122 RRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEI-NNLTNKIVEETL 173


>gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 918

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/935 (51%), Positives = 638/935 (68%), Gaps = 31/935 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           + + V KR+  +T F+P +I  AI  AF  V    +  ++    Q II  + E  + ++ 
Sbjct: 8   QKISVRKRDKQITPFNPERIKNAISSAFRDVWNLQSYHTLDKAQQVIIGQVFEAVIEKIR 67

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   + +E IQD VE  LM+  H+K+ + Y+LYRE R+  R  +         AP 
Sbjct: 68  CEKPFDTPIDVERIQDYVELILMRQEHYKVAKSYILYRENRAKARQQKEEE------APA 121

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           +++ + +G  ++++ ++L++ ++ +C   + + SS+ ++      ++D +S   +  A I
Sbjct: 122 IRVKLINGDSVAYSQEKLKLSLKRSCQDFEPLCSSEELMKAIEPQLFDRISSEQIRQAAI 181

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++++LIEKEP Y KV A  LL+K+ RE+ +  +                  F  YI++G
Sbjct: 182 LAAKSLIEKEPAYDKVAANILLQKIYREIESLPFSN----------------FSSYIQKG 225

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V+A+ LH  ++ FD   L   +++ERD  F Y GLQ LYDRY + I+    E+PQ F+MR
Sbjct: 226 VEAKRLHSDLLGFDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMR 285

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           V+MGLAL ET+K  +AVEFY++LSSF ++ STPTLFNSGT HPQLSSC+L+TV DDL  I
Sbjct: 286 VSMGLALNETDKNSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDI 345

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  + ++A L+K++GG+GNDWT VR   AHI+GTNGKSQGVIPFLKV NDTAVAVNQGGK
Sbjct: 346 FRVISDDAKLSKWAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGK 405

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGA+C YLETWH+D+ EFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV ++  WTLFS
Sbjct: 406 RKGAICCYLETWHLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFS 465

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           PDEV DLHDLYG+ F+  YE+YER+A  G+IK +R   A+ LWRKML+ LFETGHPWIT+
Sbjct: 466 PDEVPDLHDLYGRAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITW 525

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           KDP NIR  Q+H GV+HSSNLCTEI L +S EETAVCNLGS+NL  H    + D   L  
Sbjct: 526 KDPSNIRGNQKHAGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEK 585

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI TA+R+LDNVIDIN +   +A++SN  HR IGLG+MGFQ AL+L+ IPY S EA+  A
Sbjct: 586 TIATAIRMLDNVIDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFA 645

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTS 742
           D SME IS+ AI AS  LA+ERG+Y SFKGS WD G+FP  ++ LL E R  ++ +++ S
Sbjct: 646 DSSMETISYFAIKASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIKIPIDQCS 705

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L + ++  GMRNS+ +AIAPTATI+ I GVSQSI+P Y NL+ KSN+SG+FT V
Sbjct: 706 SRDWKTLLEIIRQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSV 765

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV  LK  +LWD+ M+ +LKYHDGS+  I RIP ++++   TAFE+   WLI  A+ 
Sbjct: 766 NHYLVETLKSLNLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAA 825

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWID  QSLNLYL EPSG+KLD +YR AW +GLKTTYYLR+R+AT VEKSTL     K
Sbjct: 826 RQKWIDMGQSLNLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLDI--NK 883

Query: 923 LNAVPVTDPNSSTHSLGIP--SSCT-SDTECEVCQ 954
            +  P    N S  S   P    C+  D  CE CQ
Sbjct: 884 FDIQPKWMKNKSASSSIAPRQGQCSIDDPTCEACQ 918


>gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D(s)2923]
 gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis Sweden2]
 gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/150]
 gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/11023]
          Length = 1047

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/945 (52%), Positives = 639/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            AVE AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70]
 gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70s]
          Length = 1047

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/945 (52%), Positives = 639/945 (67%), Gaps = 30/945 (3%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL--- 83
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  +   
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 84   -LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS-DAPI 141
              Q ++    + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S +  I
Sbjct: 176  CPQQDRR---IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTI 232

Query: 142  APK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLE 199
            A + ++++  DG+  +    +L   +  ACS   + +   +L++  + N Y G+ ES++ 
Sbjct: 233  AEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVV 292

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCR 258
             A I ++R  IEKEP+YA V A  LL+ + +E L  + Y +  +  H +       +F R
Sbjct: 293  LACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRD-------HFKR 345

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            YI EG   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ
Sbjct: 346  YIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQ 405

Query: 319  AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+MRVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D
Sbjct: 406  IFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQD 465

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +L  I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAV
Sbjct: 466  NLVNIYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAV 525

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   
Sbjct: 526  NQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGT 585

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            WTLFSPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGH
Sbjct: 586  WTLFSPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGH 645

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
            PW+TFKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D 
Sbjct: 646  PWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDE 705

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL+ TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS E
Sbjct: 706  EKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQE 765

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
            A+E AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L
Sbjct: 766  AIEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANL 825

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             M+ +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+S
Sbjct: 826  QMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLS 885

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+FT+ N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+
Sbjct: 886  GEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWI 945

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IE ASRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS  
Sbjct: 946  IECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSF- 1004

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGI-------PSSCTSDTECEVCQ 954
              VD     +      + + S GI          C+ +  CE CQ
Sbjct: 1005 --VDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  ++
Sbjct: 7   KQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVV 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R     S         
Sbjct: 67  QKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQS--------- 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           L ++   GT++ FN  ++   +E+A
Sbjct: 118 LSVVRRCGTVVHFNPMKISAALEKA 142


>gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
 gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
          Length = 945

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/937 (52%), Positives = 637/937 (67%), Gaps = 27/937 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHN 87
           QV KR+G +  FD ++I  AI KA  A  G  A+  +   V   I + TE+ V R     
Sbjct: 24  QVRKRDGRLARFDLARIGTAITKAVTAELGAAAAHELPAHVAQSITDYTER-VARWCDLQ 82

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +    + +E IQD+VE  LM +G H++ R YVLYRE       +Q+H +     A   ++
Sbjct: 83  EQ---LAVESIQDEVERVLMTAGEHRVARRYVLYRE-------SQAHKRK----ASATQV 128

Query: 148 MMDDGTLISFNSKRLEMIVEEACS-GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +  G L +     LE  + +AC    Q   +  + ++  +++   ++ + L  A I + 
Sbjct: 129 RLASGELTALPINALEHWIAQACELHGQAPQAAAITADIVRSLPTEVTPTQLFDATILAL 188

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP--QKATHHEMQCLYPEYFCRYIEEGV 264
           R+ +E EP +  V A+ LL++   ++L   +        +  E +  Y  YF  Y+   V
Sbjct: 189 RSRVELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSERRAGYQRYFPEYVRAAV 248

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
               LHESM+D++L  +A  +  ERD    YLG+Q LYDRYFL   G R+E+PQ F+MR+
Sbjct: 249 ARGQLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLAHEGLRVELPQIFWMRI 308

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E  K +R  EFY+LLS  HF  +TPTLFN+GT HPQLSSC+L+TV DDL GIF
Sbjct: 309 AMGLALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQLSSCYLSTVEDDLVGIF 368

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+Q+NA+L+K++GGLGNDWT +R LGA I GT GKSQG++PFLKV +D AVAVNQGGKR
Sbjct: 369 KAIQDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFLKVVSDAAVAVNQGGKR 428

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LR+ TGD+RRRTHD++TANWIPDLFMKRV     WTLFSP
Sbjct: 429 KGAVCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDLFMKRVLARDTWTLFSP 488

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +EV DLH  YG+ FE  Y +YE+ AD G IK+FR++SAV LWRKMLT+LFETGHPW+T+K
Sbjct: 489 NEVPDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRKMLTLLFETGHPWVTWK 548

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP NIRSPQ HVGVVH+SNLCTEI LN+S+EETAVCNLGS+NL AH  +   D   L  T
Sbjct: 549 DPSNIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLGAHITDGVLDLAMLERT 608

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           IRTAVR+LDNVID+N +   +A  +N  HR IGLGLMGFQ AL+ + I YAS  AV+ AD
Sbjct: 609 IRTAVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALYAMQISYASDRAVQFAD 668

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743
           ESME IS+ A+ AS ELA+ERG Y+SF GS WD+G  PID+I L+ + R  ++ + RT++
Sbjct: 669 ESMEAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDLVEQERGIKIDVPRTAQ 728

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W+ +++ ++  G+RNSN +AIAPTATI+NI GVSQSI+P+Y+NLYVKSN+SG+FT VN
Sbjct: 729 LNWEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYRNLYVKSNLSGEFTQVN 788

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV ELK   LW E M+  LKY+DG +  I  IP ++K+ + TAFEI+P WLIE A+RR
Sbjct: 789 EWLVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRTAFEIEPRWLIECAARR 848

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919
           QKWID  QSLNLYL  PSG+KLD +Y  AW +GLKTTYYLR+ +AT VEKST+     G+
Sbjct: 849 QKWIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLAATQVEKSTIDVNRFGI 908

Query: 920 DGKL--NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             +   N     D          P  C    +CE CQ
Sbjct: 909 QPRWMKNKSASGDIQIDRTLASAPEVCNLGGDCEACQ 945


>gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            pecorum E58]
 gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pecorum E58]
          Length = 1047

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/940 (52%), Positives = 647/940 (68%), Gaps = 20/940 (2%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLL- 84
            +GV +I+R+G    F+P KIS A+ KAF A ++  G + S  V +I   LT + V  ++ 
Sbjct: 116  RGVLIIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLEI-NELTLKIVEEIMA 174

Query: 85   QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ-SHSKSDAPIAP 143
            QH   A  +HIE IQD VE  LM +G + + + Y+LYRE R   R  + S   S+  +  
Sbjct: 175  QHVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYILYREARMRARENKVSEVNSECFVED 234

Query: 144  KL-KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETA 201
            ++ +++ +D T    N   LE     AC+   +  SSK +    + N++ G+ ES++ +A
Sbjct: 235  EVYRVVREDQTEYLLNKAELEKRFTWACARFPETTSSKTLADMAFANLFSGVKESEVVSA 294

Query: 202  LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
             I ++R  IEKEP+YA V A  L E + +E +         A   ++   +  YF +YI 
Sbjct: 295  CIMAARANIEKEPDYAFVAADLLHEVVYQETVGL------SAVSSKLTDAHRRYFKQYIL 348

Query: 262  EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            EG   RL +  + ++DL  LA  L   RD  F Y+G+Q L+DRYF    G R+E  Q F+
Sbjct: 349  EGENYRL-NPQLKEYDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFW 407

Query: 322  MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            MRV+MGLAL E  EK   A+ FY+LLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL
Sbjct: 408  MRVSMGLALNEGKEKTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDL 467

Query: 381  YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
              I+  + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTAVAVNQ
Sbjct: 468  QHIYKVISDNALLSKWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQ 527

Query: 441  GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GGKRKGA C YLE+WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WT
Sbjct: 528  GGKRKGAACVYLESWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWT 587

Query: 501  LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            LFSPD+V  LH+ YG EFE  YE YE++ + GEI+++RK+ A  LWRKML+ML+ETGHPW
Sbjct: 588  LFSPDDVPGLHEAYGLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPW 647

Query: 561  ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            +TFKDP NIR+ Q HVGVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N + +  K
Sbjct: 648  LTFKDPSNIRAAQDHVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAK 707

Query: 621  LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            LA TIR AVR+LDNVID+N + I +A ++N THRA+GLG MGFQ AL+  +I YAS EAV
Sbjct: 708  LAETIRIAVRILDNVIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAV 767

Query: 681  EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAM 738
            E ADE  E I++HAI +S ELA+ERG Y+S+KGS WD+G+ PID+I LL + R E  + M
Sbjct: 768  EFADEVAEIIAYHAILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLM 827

Query: 739  NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            + + R  W+ +++ V+  GMRNS+ M IAPTATI+NI G++QSI+P+Y+NL+VKSN+SG+
Sbjct: 828  DTSCRKDWEPVREAVRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGE 887

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            FT+ N +L+ +LK   LWDE M+ DLKY DGS+  IERIP++LKK+  TAFEI+P WLIE
Sbjct: 888  FTIPNVYLIRKLKSLGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIE 947

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS---- 914
             ASRRQKWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS    
Sbjct: 948  CASRRQKWIDMGQSLNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKSFTDI 1007

Query: 915  TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +G+  +         +         + C+ +  CE CQ
Sbjct: 1008 NKRGIQPRWMKNMSASTSIIVERTAKNAVCSMEEGCESCQ 1047



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF       + A     ++  I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEEDAPLPKDLEKSISDITSKVVGE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +++      +V +E IQD VE  L  +G   + R+Y++YR++  + R        ++P  
Sbjct: 65  VIEKISQGQVVTVERIQDIVESQLYVNGLQDVARDYIVYRDQHKEQR--------ESPWR 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L I+  DGT + FN  ++   +E+A
Sbjct: 117 GVL-IIRRDGTSVKFNPMKISAALEKA 142


>gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila
            psittaci RD1]
 gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci 6BC]
          Length = 1045

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/939 (51%), Positives = 641/939 (68%), Gaps = 24/939 (2%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---IKNLTEQTVTRLLQ 85
            V VI+R+G    F+P KIS A+ KAF A +       + +Q+I   I  LT + V  +L 
Sbjct: 118  VSVIRRDGSTVKFNPMKISAALEKAFRATQ---KITDVSIQEILSEINGLTNKIVEEILG 174

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPK 144
                   + IE IQD VE  LM  GH+ + + Y+LYRE RS +R   Q       P+   
Sbjct: 175  VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDPVEEV 234

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETALI 203
              ++  DGT  S N  +L      AC    + +   VL++  + N Y G+ ES++  A I
Sbjct: 235  YDVVKSDGTTYSINKSQLIDKFIWACQRFPETTDPHVLADMAFANFYSGIKESEIALACI 294

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++R  IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G
Sbjct: 295  MAARANIEKEPDYAYVAAELLMDVVYQETMG------KTATDSDLAEAQKQCFKNYILNG 348

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
               RL +  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR
Sbjct: 349  ETYRL-NPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMR 407

Query: 324  VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+MGLAL E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 408  VSMGLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAH 467

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGG
Sbjct: 468  IYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGA   YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 528  KRKGATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLF 587

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+T
Sbjct: 588  SPDDVPGLHEAYGIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMT 647

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL 
Sbjct: 648  FKDPSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLG 707

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  A+R+LDNVID+N +  ++A  +N +HRA+GLG+MGFQ AL+ L+I YASPEAVE 
Sbjct: 708  ETISIAIRILDNVIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEF 767

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD+S E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ 
Sbjct: 768  ADKSSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDT 827

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            + R  W+ +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 828  SCRKDWNPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 887

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+N+LK+  +WD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE A
Sbjct: 888  IPNVYLINKLKELGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECA 947

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKW+D  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS +    
Sbjct: 948  SRRQKWVDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINK 1007

Query: 921  GKLNAVPVTDPNSSTHSLGIPSS-----CTSDTECEVCQ 954
              +    + + ++ST S+ +  +     C+ +  CE CQ
Sbjct: 1008 RGIQPRWMKNKSAST-SIVVDRAKKTPVCSFEEGCESCQ 1045



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF           +   +++ I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
            +Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R    H  S     
Sbjct: 65  AVQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDQHKEQREGSWHCVS----- 119

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLE 199
               ++  DG+ + FN  ++   +E+A    Q   DVS + +LSE      +GL+   +E
Sbjct: 120 ----VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-----NGLTNKIVE 170

Query: 200 TAL 202
             L
Sbjct: 171 EIL 173


>gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            caviae GPIC]
 gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            caviae GPIC]
          Length = 1044

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/934 (51%), Positives = 626/934 (67%), Gaps = 15/934 (1%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            V V +R+G    F+P KIS A+ KAF A +    +        I +LT + V  +L    
Sbjct: 118  VLVRRRDGNAVKFNPMKISAALEKAFRATQKNTDTPFQETLAEINDLTNKIVEEILVVCS 177

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                V IE IQD VE  LM  GH+ + + Y+LYRE RS +R ++ +  +   I     ++
Sbjct: 178  QEKTVDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRESKENVATQESIEEVYDVV 237

Query: 149  MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL-SETYKNMYDGLSESDLETALIFSSR 207
             +DG+    N  +L      AC    + ++   L S  + N Y G+ E+++  A I ++R
Sbjct: 238  REDGSTYQINKAQLTDKFIWACQRFPETTNPQTLASMAFANFYSGIKEAEIVKACIMAAR 297

Query: 208  TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              IEKEP+YA V A  L + + +E +       + AT  ++     + F  YI  G + R
Sbjct: 298  ANIEKEPDYAYVAAELLTDVVYQETMG------KSATDSDLAEAQKQCFKNYILNGEEYR 351

Query: 268  LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
            L +  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR++MG
Sbjct: 352  L-NPRLKEYDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMG 410

Query: 328  LALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E E K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  
Sbjct: 411  LALNEGEDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKV 470

Query: 387  LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            + +NAML+K++GG+GNDWT VR +G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG
Sbjct: 471  ISDNAMLSKWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 530

Query: 447  AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD+
Sbjct: 531  AMCVYLEIWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDD 590

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            V  LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKDP
Sbjct: 591  VPGLHEAYGFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDP 650

Query: 567  CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             NIR  Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KLA TI 
Sbjct: 651  SNIRGAQDHAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETIS 710

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             A+R+LDN+ID+N +   +A  +N +HRA+GLG MGFQ AL+ L+I YAS EAVE AD+S
Sbjct: 711  IAIRILDNIIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKS 770

Query: 687  MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
             E I+++AI +S  LA+ERG YSS+KGS WD+G  P+D++ LL E R E  + M+ + R 
Sbjct: 771  AELIAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRK 830

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
             W  +++ +K  GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N 
Sbjct: 831  DWTPVREAIKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 890

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +L+ +LK+  +WD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRRQ
Sbjct: 891  YLIEQLKKLGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQ 950

Query: 865  KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS----TLKGVD 920
            KWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS      +G+ 
Sbjct: 951  KWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFTDVNKRGIQ 1010

Query: 921  GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             +         +           C+ +  CE CQ
Sbjct: 1011 PRWMKNKSASTSIVVERTKSTPVCSLEEGCESCQ 1044



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +IS+A+  AF        +  +   +++ I ++T + V  
Sbjct: 5   KEKNYTIVKRNGMFVPFNQDRISQALEAAFRDTRSLENNSPLPEDLENSISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R    H        
Sbjct: 65  VMQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIVYRDQHKEQREGSWHC------- 117

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
             + +   DG  + FN  ++   +E+A    Q
Sbjct: 118 --VLVRRRDGNAVKFNPMKISAALEKAFRATQ 147


>gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
 gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
          Length = 846

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/819 (56%), Positives = 590/819 (72%), Gaps = 24/819 (2%)

Query: 158 NSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216
           +S+ +  I+EE C G   +V+   +        Y G+S+++L  ALI ++RT IE EP Y
Sbjct: 30  DSQAVLRILEEVCQGFGPEVNVDQLFQSVNATTYAGISDAELWQALIMATRTNIEFEPAY 89

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             V AR LL  L  E L+T   +  +   ++   +Y  Y   Y+E GV    L     ++
Sbjct: 90  TFVAARLLLISLYNEALSTT--QATRVGLNDAASIYKNYLSDYVEFGVSKGYLDPRFQEY 147

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           DL+ LA+ +  ERD  F Y GLQILYDRYFL  N  R E+PQ  +MRVAMGLA  E  KE
Sbjct: 148 DLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAFNEEHKE 207

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            RA+EFY LLS F+F  +TPTLFN+GT HPQLSSC+LTTV DDL+ IF  +Q+NA+L+K+
Sbjct: 208 ARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDNALLSKW 267

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GGLGNDWT VR LGAHI GTNG SQG+IPFLKV NDTAVAVNQGGKRKGAVCAY+E WH
Sbjct: 268 AGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCAYIENWH 327

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+EEFLDLRKNTGDDRRRTHDM+TA WI DLFMKRV +N  WTLFSPD VSDLHDLYGK
Sbjct: 328 LDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDLHDLYGK 387

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            FE  YE YER  + G+I  +R++SA+ LWRKMLT LFETGHPWITFKDP N+RSPQ H 
Sbjct: 388 AFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVRSPQDHA 447

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           GVVHSSNLCTEI LN+S++ETAVCNLGSINL AH  + + ++++L  T+RTAVR+LDNVI
Sbjct: 448 GVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVRMLDNVI 507

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN +  ++A+ +N  HR +GLGLM FQ AL+ L + YAS  A+E AD SME IS++AI 
Sbjct: 508 DINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAISYYAIL 567

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKT 755
           AS ELA E G Y S++GS WD+G+ PIDSI +L E R + + M+R+  L WD+++  VK 
Sbjct: 568 ASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQKIDMDRSMTLDWDKVRTAVKQ 627

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNSN MAIAPTATI++I GVSQSI+PSY+NLYVKSN+SG+FT++NSFLV++LK+ ++
Sbjct: 628 NGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDDLKRLEI 687

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD   +  LKY+DGS+  +  +P+++++ + TAF+I+P WLI  ASRRQKWID  QS++L
Sbjct: 688 WDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDMGQSIDL 747

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGKL--NAVPVT 929
           YL  PSGKKL  +Y+ AW  GLKTTYYLR+ +AT VEKST+     G+  +   N+ P +
Sbjct: 748 YLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMKNSSPSS 807

Query: 930 D-----------PNSSTHSL---GIPSSCTSDTECEVCQ 954
           +           P  +   L   G  + C    +CE CQ
Sbjct: 808 NIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846


>gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            abortus S26/3]
 gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila
            abortus S26/3]
          Length = 1045

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/938 (51%), Positives = 636/938 (67%), Gaps = 22/938 (2%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---IKNLTEQTVTRLLQ 85
            V VI+R+G    F+P KIS A+ KAF A +       + +Q+I   I  LT + V  +L 
Sbjct: 118  VSVIRRDGSTVKFNPMKISAALEKAFRATQ---KITDVSIQEILSEINGLTNKIVEEILG 174

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   + IE IQD VE  LM  GH+ + + Y+LYRE RS +R  +    +   +  ++
Sbjct: 175  VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDLVEEV 234

Query: 146  -KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE-TYKNMYDGLSESDLETALI 203
              ++  DGT  S N  +L      AC    + +   VL++  + N Y G+ ES++  A I
Sbjct: 235  YDVVKSDGTTYSINKSQLIDKFIWACQRFPETTDPQVLADMAFANFYSGIKESEIALACI 294

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++R  IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G
Sbjct: 295  MAARANIEKEPDYAYVAAELLMDVVYQEAMG------KTATDSDLAEAQKQCFKNYILNG 348

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
               RL +  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR
Sbjct: 349  ETYRL-NPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMR 407

Query: 324  VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+MGLAL E  +K   A+ FYNLLS+F +  +TPTLFNSGTRH QLSSC+L+T+ DDL  
Sbjct: 408  VSMGLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAH 467

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGG
Sbjct: 468  IYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGA   YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 528  KRKGATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLF 587

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+T
Sbjct: 588  SPDDVPGLHEAYGTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMT 647

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL 
Sbjct: 648  FKDPSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLE 707

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  A+R+LDNVID+N +  ++A  +N +HRAIGLG+MGFQ AL+ L+I YASPEAVE 
Sbjct: 708  ETISIAIRILDNVIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEF 767

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD+S E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ 
Sbjct: 768  ADKSSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDT 827

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            + R  W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 828  SCRKDWTPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 887

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+++LK+  LWD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE A
Sbjct: 888  IPNVYLISKLKELGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECA 947

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS----TL 916
            SRRQKWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS      
Sbjct: 948  SRRQKWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINK 1007

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +G+  +         +           C+ +  CE CQ
Sbjct: 1008 RGIQPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           K K   V+KRNG    F+  +I +A+  AF           +   +++ I ++T + V  
Sbjct: 5   KEKHYTVVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR+   + R    H  S     
Sbjct: 65  VIQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDHHKEQREGSWHCVS----- 119

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLE 199
               ++  DG+ + FN  ++   +E+A    Q   DVS + +LSE      +GL+   +E
Sbjct: 120 ----VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-----NGLTNKIVE 170

Query: 200 TAL 202
             L
Sbjct: 171 EIL 173


>gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 819

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/816 (55%), Positives = 587/816 (71%), Gaps = 13/816 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G L+  +  R+   ++ AC GL +     + +E  +++YD ++   + +A+I
Sbjct: 12  RVRVVSPEGGLVPLDPDRVRRHLQHACRGLPECDPDELANEVVRSLYDRVTPEQIRSAMI 71

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++R  IE++P Y KV +R +LE++ +E    V   P +A   E+   Y E F RY+   
Sbjct: 72  LAARARIERDPAYDKVASRLMLEQIYQESWGWV---PSEA---ELAATYREMFPRYVHAC 125

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A  L E +  FDL  LA+ L+ ERD    Y+GLQ LYDRY L + G R+E PQ F+MR
Sbjct: 126 ISAGRLSEELARFDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMR 185

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLAL+E +   RA +FY+LLSS  F+ +TPTLFNSGT HPQLSSC+L+TV DDL  I
Sbjct: 186 VAMGLALREDDPNARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHI 245

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  + +NA L+K++GGLGNDWT VR  GA I GT+GKSQGVIPFLK+ NDTAVAVNQGGK
Sbjct: 246 FKVIGDNAKLSKWAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGK 305

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVC YLE WH+D EEFL+LRKNTGD+RRRTHDM+TA+W+PDLFM+RV +   WTLFS
Sbjct: 306 RKGAVCCYLEPWHLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFS 365

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+EV DLH+LYG+ FE  Y  YER A+ G+++  +++ A  LWRKML+ML+ETGHPWI F
Sbjct: 366 PNEVPDLHELYGRAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAF 425

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           KDP NIRS Q HVGV+HSSNLCTEI L +S EETAVCNLGSINL+ H + +  D  KLA 
Sbjct: 426 KDPSNIRSAQDHVGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAE 485

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTAVR+LDNVIDIN +   +A++SN  HR IGLG+MGF  AL  L IPYASP+AVE +
Sbjct: 486 TVRTAVRMLDNVIDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFS 545

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742
           D++ME IS+HAI AS ELA ERG Y S++GS W +G+ PID+I LL   R  +L M+RT+
Sbjct: 546 DQTMELISWHAIMASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGDLEMDRTA 605

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           RL W  +++ V   G+RNS  MAIAPTATI+NI GVSQSI+P Y+NL+VKSN+SGDFT+V
Sbjct: 606 RLDWGPVREAVARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIV 665

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+  LW + M+  +KY+DGSI  IE IPD++K ++ TA EIDP+WLIE ASR
Sbjct: 666 NPYLVEDLKRLGLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASR 725

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----G 918
           RQKW+D  QSLN+Y+ EPSGKKL  IY  AW  GLKTTYYLR+  AT+VEK+++     G
Sbjct: 726 RQKWVDMGQSLNIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFG 785

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V  +                G  S+C    +CE CQ
Sbjct: 786 VQPRWMRSRSASSRVRIVREG--STCQLGEDCEACQ 819


>gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae CWL029]
 gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae J138]
 gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae AR39]
 gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae TW-183]
 gi|7388068|sp|Q9Z6S5|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae
            CWL029]
 gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pneumoniae AR39]
 gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138]
 gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1044

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/937 (50%), Positives = 638/937 (68%), Gaps = 21/937 (2%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLLQ-H 86
            + +I+R+GG   F+P KIS A+ KAF A ++  G +    + +I  +LT + V  +L  H
Sbjct: 118  IAIIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEI-NDLTLRIVEDVLSLH 176

Query: 87   NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPK 144
             + A  +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P    
Sbjct: 177  GEEA--INLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEET 234

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
              +  +DGT        LE     AC    +   S+++    + N+Y G+ E ++ TA I
Sbjct: 235  YVVQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACI 294

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++R  IE+EP+YA + A  L   L  E L    + P  +  H+      ++F  YI  G
Sbjct: 295  MAARANIEREPDYAFIAAELLTSSLYEETLGCSSQDPNLSEIHK------KHFKEYILNG 348

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
             + RL +  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR
Sbjct: 349  EEYRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMR 407

Query: 324  VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+MGLAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 408  VSMGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSH 467

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGG
Sbjct: 468  IYKVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLF
Sbjct: 528  KRKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLF 587

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWIT
Sbjct: 588  SPDDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWIT 647

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N++ D +KL 
Sbjct: 648  FKDPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLK 707

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE 
Sbjct: 708  ETISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEF 767

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            +DE  E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ 
Sbjct: 768  SDECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDT 827

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +S+  W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT
Sbjct: 828  SSKKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFT 887

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N++L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  
Sbjct: 888  IPNTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECT 947

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +    
Sbjct: 948  SRRQKWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINK 1007

Query: 921  GKLNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
              +    + + ++ST  +        C+ +  CE CQ
Sbjct: 1008 RGIQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    F+  +I +A+  AF        S  +   +++ I  +T + V  +L
Sbjct: 7   KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                  +V +E IQD VE  L  SG   + R+Y++YR++R   +A + +S S       
Sbjct: 67  AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQR---KAERGNSSS------I 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           + I+  DG    FN  ++   +E+A
Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKA 142


>gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila
            pneumoniae LPCoLN]
          Length = 1044

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/937 (50%), Positives = 637/937 (67%), Gaps = 21/937 (2%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMA-VEGKGASRSIRVQDIIKNLTEQTVTRLLQ-H 86
            + +I+R+GG   F+P KIS A+ KAF A ++  G +    + +I  +LT + V  +L  H
Sbjct: 118  IAIIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEI-NDLTLRIVEDVLSLH 176

Query: 87   NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPK 144
             + A  +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P    
Sbjct: 177  GEGA--INLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEET 234

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
              +  +DGT        LE     AC    +   S+++    + N+Y G+ E ++ TA I
Sbjct: 235  YVVQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACI 294

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++R  IE+EP+YA + A  L   L  E L    + P  +  H+      ++F  YI  G
Sbjct: 295  MAARANIEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHK------KHFKEYILNG 348

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
             + RL +  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR
Sbjct: 349  EEYRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMR 407

Query: 324  VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+MGLAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 408  VSMGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSH 467

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGG
Sbjct: 468  IYKVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGG 527

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLF
Sbjct: 528  KRKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLF 587

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWIT
Sbjct: 588  SPDDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWIT 647

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL 
Sbjct: 648  FKDPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLK 707

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE 
Sbjct: 708  ETISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEF 767

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            +DE  E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ 
Sbjct: 768  SDECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDT 827

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +S+  W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT
Sbjct: 828  SSKKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFT 887

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N++L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  
Sbjct: 888  IPNTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECT 947

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +    
Sbjct: 948  SRRQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINK 1007

Query: 921  GKLNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
              +    + + ++ST  +        C+ +  CE CQ
Sbjct: 1008 RGIQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    F+  +I +A+  AF        S  +   +++ I  +T + V  +L
Sbjct: 7   KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                  +V +E IQD VE  L  SG   + R+Y++YR++R   +A + +S S       
Sbjct: 67  AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQR---KAERGNSSS------I 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA 169
           + I+  DG    FN  ++   +E+A
Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKA 142


>gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 806

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/793 (55%), Positives = 558/793 (70%), Gaps = 7/793 (0%)

Query: 163 EMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           ++IVE   +  Q   +  +        Y  ++ ++   A   ++R+ IE+EP+Y+ V A 
Sbjct: 20  QLIVEACAAYPQTTDANTLWQAASLGFYPNMAVAEQLQACCLTARSWIEQEPDYSFVAAA 79

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            L  +L  EVL      P           Y   F  YI+ G+   LL   +  FDL  LA
Sbjct: 80  LLASQLHFEVLGEYLATPAVVPR------YASAFVDYIQAGIAQGLLDPKLASFDLARLA 133

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             +  ERD    Y GLQ LYDRYF+   G R E+PQ F+MRVAMGLAL E ++E + + F
Sbjct: 134 AAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADREAQTLRF 193

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y +LS FHF  +TPTLFN+ T HPQLSSC+L+TV DDL  IFGA+ +NAML+K++GGLGN
Sbjct: 194 YEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSKWAGGLGN 253

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           DWTPVR LGA IHGTNG SQGVIPFLK+ NDTA+AVNQGGKRKGAVCAYLE WH D+E+F
Sbjct: 254 DWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAWHADLEDF 313

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDLRK TGD+RRRTHDM+TA W+PDL M+RV  N  W+LFSPDEV DLHDLYG++F + Y
Sbjct: 314 LDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYGQDFAVRY 373

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE  A +G ++  R++ AVALWRK+LT LFETGHPWIT+KD  N+RSPQ HVGV+HSS
Sbjct: 374 AEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDHVGVIHSS 433

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI LN+S++E AVCNLGSINL AH  +   D +KL +T+ TAVR+LDNVIDIN + 
Sbjct: 434 NLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNVIDINFYP 493

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +A ++N  HR IGLGLMGFQ AL+ L I YAS  AVE +D SME I++ A++AS+ELA
Sbjct: 494 RPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAVAASIELA 553

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +ERGAY SF+GS WD+G+ PIDS+ +LAE RD +  ++ +S   W  L++ +   G+RNS
Sbjct: 554 RERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSKPELDHSSHYDWQPLREALAQYGIRNS 613

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           N +AIAPTATIANI G SQSI+P+Y++LYVKSN+SGDFT VN  LV+ LK R LWD  ++
Sbjct: 614 NLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKARGLWDVDLL 673

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           ++LKY+DG+I  IERIP +LK    TAFEI P WLI  A+RRQKWID  QSLNLY+ E S
Sbjct: 674 AELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSLNLYVAETS 733

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           GK+L+ IY  AW MGLKTTYYLR+ +AT +EKSTL      +    + + + S   L   
Sbjct: 734 GKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLDINRFGVQPRWMRNRSESASVLSDN 793

Query: 942 SSCTSDTECEVCQ 954
                D  CE C+
Sbjct: 794 VCPIDDPSCEACE 806


>gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 762

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/734 (58%), Positives = 543/734 (73%), Gaps = 6/734 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  + + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L 
Sbjct: 690 EAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLD 749

Query: 746 WDELKKRVKTIGMR 759
           W  ++ RV+  G+R
Sbjct: 750 WAPVRARVQK-GIR 762


>gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 815

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/815 (53%), Positives = 569/815 (69%), Gaps = 14/815 (1%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +  +DGT        LE     AC    +   S+++    + N+Y G+ E ++ TA I +
Sbjct: 8   VQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMA 67

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R  IE+EP+YA + A  L   L  E L    + P  +  H+      ++F  YI  G +
Sbjct: 68  ARANIEREPDYAFIAAELLTSSLYEETLGCNSQDPNLSEIHK------KHFKEYILNGEE 121

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            RL +  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+
Sbjct: 122 YRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVS 180

Query: 326 MGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+
Sbjct: 181 MGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIY 240

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKR
Sbjct: 241 KVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKR 300

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSP
Sbjct: 301 KGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSP 360

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           D+V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFK
Sbjct: 361 DDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFK 420

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL  T
Sbjct: 421 DPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKET 480

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I  A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +D
Sbjct: 481 ISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSD 540

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTS 742
           E  E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ +S
Sbjct: 541 ECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSS 600

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ 
Sbjct: 601 KKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIP 660

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N++L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SR
Sbjct: 661 NTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSR 720

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      
Sbjct: 721 RQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRG 780

Query: 923 LNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
           +    + + ++ST  +        C+ +  CE CQ
Sbjct: 781 IQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 815


>gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 706

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/675 (59%), Positives = 506/675 (74%), Gaps = 3/675 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEDQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 449

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV 
Sbjct: 450 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVP 509

Query: 509 DLHDLYGKEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           DLHDL GK F+  YE YE   +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 510 DLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPC 569

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  
Sbjct: 570 NLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDV 629

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SM
Sbjct: 630 AVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSM 689

Query: 688 EFISFHAISASVELA 702
           E +S++AI AS +LA
Sbjct: 690 EAVSYYAIQASCDLA 704


>gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
 gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
          Length = 1080

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/944 (46%), Positives = 609/944 (64%), Gaps = 35/944 (3%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +++I+RNG V  +  SKI  A+ K+F+++            D+ + +T++       +N 
Sbjct: 154  IRLIRRNGQVVPWSESKIEIAVRKSFLSLHLDSGP----AMDVARAVTDRL------NNS 203

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                ++IED+QD V+  LM+ GH K+   Y+LYR  R+ +R     ++ D      + ++
Sbjct: 204  GQAFINIEDVQDTVQEELMRQGHFKVAESYILYRAHRTRLRDESGETEVDETQQESMIVV 263

Query: 149  MDDGTLISF-NSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             ++    +F +   L+  +E A  GL+  +S+  + +E  +++Y  +   DL+  +I ++
Sbjct: 264  TEENGENTFWDGVDLKRRIEFATIGLELTLSNDEIETELRRSLYPEMKREDLQKTIILNA 323

Query: 207  RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            + LIE++ ++A+   R LL  +  EVL     +       +++  +      Y++  V+ 
Sbjct: 324  KALIERDADFARFAGRVLLSYIYEEVLDWDIVRDGV---EQLKEAHRRGLKTYLKRAVEI 380

Query: 267  RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS----RIEMPQAFFM 322
              +H  ++++DL  L+  L    D  F+YLG+Q LYDRY +    +    R+E+PQ F++
Sbjct: 381  ERVHPKLLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFWI 440

Query: 323  RVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            RVAMGL   E E +E   +  YNL  S  F  STPTLFNSGT H QLSSC+L  V D + 
Sbjct: 441  RVAMGLFHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSIE 500

Query: 382  GIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    + +NA L+K++GGLG  WT VRG G  I GTNG+SQGVIPFLK+ ND  VAVNQ
Sbjct: 501  SIMHRGIADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVNQ 560

Query: 441  GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRRTHDMNTANWIPDLFMKR+     WT
Sbjct: 561  GGKRRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDWT 620

Query: 501  LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            LF  +E  DLHDLYGK FE  Y  YE  A+RGE+   +K+ A+ LW+ ML M+FETGHPW
Sbjct: 621  LFRSNETPDLHDLYGKAFEDRYCEYEAMAERGEL-FGKKVPAIELWKSMLRMIFETGHPW 679

Query: 561  ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
            ITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S EETAVCNLGS+ L +H   +   D++
Sbjct: 680  ITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDHE 739

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            KL  T+  AVR LDNVIDIN +  E AK +N  HR IGLG+MG Q+AL +  I +AS  A
Sbjct: 740  KLRETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQAA 799

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738
            VE  DE ME I+++A  AS +LA E G YS++KGS WD+G+ P D++ +L   R +E+ +
Sbjct: 800  VEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVVV 859

Query: 739  NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             R  ++ W+ L+ ++   GMRNSN +AIAPTATI+NI G S  I+P+Y+NL+VKSN+SGD
Sbjct: 860  PRAGKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSGD 919

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            F V+N  LV +LK R LWD+ M+  LKY DG +  I+ IP DL++ + TAF I+  + I+
Sbjct: 920  FIVLNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFID 979

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL-- 916
            +A+RRQKWIDQ+QS+NL+L EP  K L  +YR AW  GLKTTYYLR+  A+++EK+T+  
Sbjct: 980  AAARRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGASNIEKATVSV 1039

Query: 917  -KGVDGKL-NAVPV----TDPNSSTHSLGIPSSCTSDTECEVCQ 954
             K V G+  +A P     TD      SL    +  +  ECE CQ
Sbjct: 1040 KKEVRGRAGDATPAKKEYTDAEVKACSL---EAMMNGGECEACQ 1080


>gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1062

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/917 (47%), Positives = 598/917 (65%), Gaps = 29/917 (3%)

Query: 26   IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            +K V++I+R+  V  +   KI  A+ +AF+++E + +  ++ V  I        VT  +Q
Sbjct: 151  LKNVRLIRRDRKVVPWKQEKIEIAVRRAFLSLE-QNSDPAVEVAAI--------VTERIQ 201

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDAPIAPK 144
                A  V IE++QD V+  LM+ GH K+   YVLYRE+R   R  ++    +D      
Sbjct: 202  ATGQAF-VEIEEVQDIVQEELMKQGHFKVAAHYVLYREQRRAHREQEALQLATDTEQDSM 260

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +   DG+   ++   L+  +E A  GL   ++   +  E  ++++D +SE+DLE  + 
Sbjct: 261  VVVKKTDGSTYFWDGIDLKKRIEFASIGLDLCLNHDEIEIELRRSIFDEISEADLEKTIT 320

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++RTLIE++ ++AK  AR  L  + +E L     +        ++  + + F  Y+  G
Sbjct: 321  LNARTLIEQDADFAKFAARIKLSYMYQETLGWDIVRDGIGA---IKTFHQKKFKEYVRHG 377

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRIEMPQA 319
            +    L+  + ++D+  LA  L    D  F+YLG+Q LYDRY +         RIE PQ 
Sbjct: 378  IMIGRLNPKLKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQF 437

Query: 320  FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            F+MRVAMGL   E E+E +A   Y L  S  F  STPTLFN+GT H QLSSC+L  V D 
Sbjct: 438  FWMRVAMGLFHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDS 497

Query: 380  LYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI    + +NA L+K++GGLG  WT VRG G++I GTNG+SQG++PFLK+ ND  +AV
Sbjct: 498  IEGIMQRGIADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAV 557

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRR HDMNTANW+PDLFMKR+     
Sbjct: 558  NQGGKRRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQM 617

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            W+ F   EV DLHD YG +FE  Y  YE +A +GEI   +++ A+ +W++ML+M+FETGH
Sbjct: 618  WSFFRTSEVPDLHDSYGADFEKKYTEYEAKAAKGEI-WSKEVPAIEVWKRMLSMIFETGH 676

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
            PWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S EETAVCNLGSI L  H   +   D
Sbjct: 677  PWITFKDPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNID 736

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +DKL  T++TA+R LDNVIDIN +  E AK +N  HR IGLG+MG Q+ L+L   P+AS 
Sbjct: 737  HDKLRETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQ 796

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736
            EAVE  DE ME ++++AI AS +LA ERG Y S+KGS WD+G+ P D++ LL + R  E+
Sbjct: 797  EAVEFNDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEV 856

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             + R  +L W  ++++V   GMRNSN MAIAPTATI+NI G S  I+P Y+NL+VKSN+S
Sbjct: 857  DVPRGGKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLS 916

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+F ++N  LV +LK R LW+  M  +LKY DG +  I+ IP DLK  + TAF +D  WL
Sbjct: 917  GEFIILNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWL 976

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST- 915
            + +A+RRQKWIDQ+QS+NL+L  P  K L  +YR AW  GLKTTYYLR+  A+++EK+T 
Sbjct: 977  VLAAARRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV 1036

Query: 916  -----LKGVDGKLNAVP 927
                 L+G+ G   A P
Sbjct: 1037 GAKKELRGIVGGKAAPP 1053


>gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase, subunit alpha [Conexibacter
            woesei DSM 14684]
 gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter
            woesei DSM 14684]
          Length = 1091

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/951 (44%), Positives = 592/951 (62%), Gaps = 47/951 (4%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +++I+R+G VT+++P+KI  AI KAF++++      S     +   ++E+       H  
Sbjct: 163  LRLIRRSGHVTAWEPAKIEVAIRKAFLSLQAD----SEPAVALAARVSERA------HAL 212

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA------ 142
                V IE +QD V+  L+ +GH +    Y++YR ERS +RA       DAP+       
Sbjct: 213  GMAYVPIETVQDIVQEELVLAGHMRAAERYIVYRAERSLLRA------QDAPVPGAPGSG 266

Query: 143  --PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLE 199
              P + ++  DGT   +  + L   +  A  GL   ++ + +  E  + +  G+  +DL 
Sbjct: 267  AQPPVPVIELDGTESLWGGEDLRARIAFAAIGLDLPLAPEELERELRRAIRPGIKRADLR 326

Query: 200  TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
               + +++ L+E++ ++++   R LL  +  E L     +        ++  +       
Sbjct: 327  RLTVLNAKALVERDSDFSRFAGRILLSHVYEEALAWDIVRDGVGA---LKAAHERGLRAL 383

Query: 260  IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRIE 315
            +E GV    +  ++ D+D+  LA  L    D  F++LGLQ LYDRY +         RIE
Sbjct: 384  LEHGVAIGRIDPALHDYDVARLAAALDPTADLDFDFLGLQTLYDRYLIVDKKAAEPRRIE 443

Query: 316  MPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             PQ F+MRVAMG+ L   +     +E+RA++ Y +     F  STPTLFN+GT H QLSS
Sbjct: 444  TPQLFWMRVAMGVCLTARDGDPAAREERAIDLYTMYKQRRFCSSTPTLFNAGTPHSQLSS 503

Query: 371  CFLTTVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            C+L  + D L  I G  + ENAM +K++GGLG  WT VRG G+HI  TNG+SQGV+PFLK
Sbjct: 504  CYLYKIEDTLSSIVGRGIAENAMCSKWAGGLGGSWTAVRGTGSHIESTNGESQGVVPFLK 563

Query: 430  VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            + ND  VAVNQGGKR G+ CAYLE WH D+ EFL+LR+NTGD+RRRTHDMNTANWIPDLF
Sbjct: 564  MHNDQLVAVNQGGKRAGSGCAYLEVWHNDIREFLELRRNTGDERRRTHDMNTANWIPDLF 623

Query: 490  MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            MKRV     WTLF  ++V DLH+ YG++FE  YE YE + D GE+   R I A+ LW++M
Sbjct: 624  MKRVEAREQWTLFRSNDVPDLHETYGRDFEARYEAYEARVDAGELHGER-IPAIELWKQM 682

Query: 550  LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
            L +LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+  +ETAVCNLGS+ +  
Sbjct: 683  LKLLFETGHPWITFKDPCNVRSPQDHAGVVHSSNLCTEITLNTGPDETAVCNLGSVVIDQ 742

Query: 610  HF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            H  A  + D+ KL +TIR AVR LD+VID+N +  E A+ +N  HR +GLG+MG Q AL+
Sbjct: 743  HLDAAGEIDHAKLRATIRVAVRALDDVIDVNFYPTEPARTANGRHRPVGLGVMGLQYALY 802

Query: 669  LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
               + + SPEA+   DE ME I+F+A  AS +LA ERG Y S+ GS WD+G+ P D++ L
Sbjct: 803  RKGLAFGSPEALAFGDEMMEAIAFYAYEASSDLAAERGTYQSYAGSKWDRGLLPQDTLDL 862

Query: 729  LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E R + + + R  R+ W  L+ ++   GMRNSN +AIAPTATIANI G S  I+P Y+
Sbjct: 863  LEEERGQPIEVERGGRMDWTPLRAKIAAQGMRNSNVLAIAPTATIANIMGTSPCIEPMYK 922

Query: 788  NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            NL+ KSN+SGDFT++N FLV +LK   +W  A+   LK  +G +  +  +P  L+ ++ T
Sbjct: 923  NLFAKSNLSGDFTILNPFLVRDLKAAGVWSGALAERLKVVEGDLEQVPEVPAALRALYRT 982

Query: 848  AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            AF+I+P  LI++A+RRQKWIDQ+QSLNL+L  P  K +  +YR+AW  GLKTTYYLR+  
Sbjct: 983  AFQIEPERLIDAAARRQKWIDQSQSLNLFLAAPDLKAMSHMYRRAWHAGLKTTYYLRTLG 1042

Query: 908  ATSVEK----STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            A+++EK    +           +P T P++   +  I  +  +  ECE CQ
Sbjct: 1043 ASAIEKATVAAPAAATVPAAAGMP-TAPDAEALACSI-EAMRNGEECEACQ 1091


>gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1109

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/904 (45%), Positives = 585/904 (64%), Gaps = 31/904 (3%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             ++I+RNG V S++P+KI  A+ KAF++VE      +   + + + LT Q +    Q   
Sbjct: 170  TKIIRRNGQVVSWNPNKIELAVSKAFVSVEMG----TTHAKAVAEALTHQMIEEAKQ--- 222

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAP--- 143
                +HIE +QD VE  LM+ GH K  + Y+LYR  R+D R   + S +D  AP  P   
Sbjct: 223  ---FIHIEQVQDLVEEQLMRQGHFKAAKAYMLYRALRADSRERDAKSAADISAPELPVDD 279

Query: 144  ----KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDL 198
                 + + + D   I ++   L+  ++ A  GL   +S   + S   +++   +S   L
Sbjct: 280  GQQEMIMVRISDKETILWDGLDLQRRIDFAMMGLDLCISRAEIESSLRRSLATDISLDHL 339

Query: 199  ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            +  +I +++ L+ ++ ++A+  AR LL  +  EVL     +    +   +Q  +   F R
Sbjct: 340  KQTIILNAKALMARDADFARFAARILLSYIYEEVLGWDIVRDGIGS---LQTFHRRAFRR 396

Query: 259  YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRI 314
             ++ GV+   ++  ++DFDL  LA+ L    D  F+YLG+  LYDRY +         R+
Sbjct: 397  NLQRGVEIDRINAKLLDFDLDKLADALDPAADMDFDYLGIHTLYDRYLIIDKKTKPAKRL 456

Query: 315  EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            E PQ F+MRVAMGL ++E +  ++ +  Y +  S  F  STPTLFNSGT H QLSSC+L 
Sbjct: 457  ETPQLFWMRVAMGLFVREEDPTEKVIALYRMYKSRRFCSSTPTLFNSGTLHSQLSSCYLY 516

Query: 375  TVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D++  I    + ENA L+K++GGLG  WT VRG G++I GTNG+SQGVIPFLK+ ND
Sbjct: 517  KVDDNIESIMIRGIAENAFLSKWAGGLGGSWTAVRGTGSYIKGTNGESQGVIPFLKLHND 576

Query: 434  TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              VAVNQGGKR+G+ CAYLETWH D+ +FLDLRKN GD+RRRTHDMNTANW+PDLFMKR+
Sbjct: 577  QLVAVNQGGKRRGSGCAYLETWHNDIVDFLDLRKNVGDERRRTHDMNTANWVPDLFMKRM 636

Query: 494  TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
               + WTLF  +E  DLH+LYG+ FE  Y  YE  A  G++ + ++I A+ LW+ ML  +
Sbjct: 637  EARSHWTLFRANETPDLHELYGQAFEKRYLEYEAMAAEGKV-LGKQIPAIDLWKSMLKAI 695

Query: 554  FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            FETGHPWITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S +ETAVCNLGS+ L  H   
Sbjct: 696  FETGHPWITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSKDETAVCNLGSVILENHLDE 755

Query: 614  -NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                D+ KL  T+R AVR LDNVIDIN +  + AK +N  HR IGLG+MG Q +L+   +
Sbjct: 756  AGNIDHTKLRETVRMAVRALDNVIDINFYPTDAAKTANTRHRPIGLGVMGLQYSLYRKGL 815

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            P+AS EAV+  DE ME ++++A  AS +LA E G YS++ GS W +G+ P D++ LL + 
Sbjct: 816  PFASKEAVDFNDEVMEAVAYYAYEASSDLAAELGKYSTYPGSKWSRGLLPQDTVDLLEKE 875

Query: 733  RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            R E + + R  ++ W  +++++   GMRNSN +AIAPTATI+NI G S  I+P + N + 
Sbjct: 876  RGEPVDVVRGGKMDWSPVREKIAKQGMRNSNVLAIAPTATISNIMGSSPCIEPLFTNNFT 935

Query: 792  KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            KSN+ G++ V+N +LV +LK+RDLW   +   LKY DG +  ++ IP DLK+ +ATAF +
Sbjct: 936  KSNLGGNYVVLNPYLVKDLKKRDLWTNEVAERLKYFDGELAAMDEIPADLKRKYATAFSV 995

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            D  +++++A+RRQKWIDQ+QS+NL+  +   + L  +YR AW  GLKTTYYLR++ A+S+
Sbjct: 996  DWAYVLDAAARRQKWIDQSQSVNLWCPDTDMRTLSHMYRAAWRKGLKTTYYLRTKGASSI 1055

Query: 912  EKST 915
            E ST
Sbjct: 1056 EGST 1059


>gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase, subunit alpha [Natrialba
           magadii ATCC 43099]
 gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba
           magadii ATCC 43099]
          Length = 836

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/763 (51%), Positives = 530/763 (69%), Gaps = 14/763 (1%)

Query: 162 LEMIVEEACSGLQDVSSKI----VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
           +E +++ A +G ++V S      + +E  +N+YDG S  +   A++ +    IE+EP Y 
Sbjct: 15  IESVLDRAQTGTEEVLSPAERDQLATEIERNLYDGASPDECYQAILQALTARIEREPTYK 74

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-F 276
           ++ A    ++  R VL       +  T   ++  Y + F   +E  V+  LL E +++ F
Sbjct: 75  QLAAAVFRQRYYRTVLG------EDLTGAALETAYRDTFVTNLERAVELDLLDERLLERF 128

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE 334
           DL  LA  L+ ERD  FEY+ ++ L  RYFL    NG  +E+PQAF+MRVAMGLAL+E +
Sbjct: 129 DLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEEDD 188

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            ++RA+EFY++LS+  F  STPTLF+SG+ HPQLSSC+LTTV D L  IF + + +A L+
Sbjct: 189 PQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGGLGNDWT +R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CAYL  
Sbjct: 249 KWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYLAC 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D   F DL++NTGD+RRRT DMNTA WIPDLFMKRV  +  WTLFSPDEV +LHDL 
Sbjct: 309 WHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHDLS 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+ FE  Y  YERQAD GE++ + ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ 
Sbjct: 369 GEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSPQD 428

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           HVG VHSSNLCTEITLN+S++E AVCNLGS+NL  H ++ + D + LA TI TA+R+LDN
Sbjct: 429 HVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRMLDN 488

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+D+  +  E+AK+SN  HR +GLG MGF  AL  L IP  S +AVE A+   EF+S+HA
Sbjct: 489 VVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSYHA 548

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753
           I  S +LA ERGAY S++GS WD+G+ P D++ LL + RD E+  +R   L W  +++ V
Sbjct: 549 ILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDERDREIPTDREETLEWATVREHV 608

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFTV+N  LV +LK R
Sbjct: 609 AEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADLKAR 668

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           D WD+ M+  LK+HDGS+  I+ +PDDL++++  AFEIDP   +   + RQ WIDQ+ S 
Sbjct: 669 DRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQSVSH 728

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           N++     G  LD +YR AW +GLKTTYYLR+  A+ +EKSTL
Sbjct: 729 NVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTL 771


>gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 815

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/764 (51%), Positives = 511/764 (66%), Gaps = 12/764 (1%)

Query: 159 SKRLEMIVEEACSGLQDV--SSKIVLSETY-KNMYDGLSESDLETALIFSSRTLIEKEPN 215
           + R+  I++ A  G   V  S +  L     +N Y G   +++  A++ +    IE +P 
Sbjct: 9   TDRIASILDRATDGEPTVTESDRTALRRAIDENCYAGADRAEVYEAILGTLSARIEAKPA 68

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y +V AR   ++   EV+       +  T  E+   Y   F   IE GV   LL   ++D
Sbjct: 69  YKRVAARVFRQRYYHEVIG------EDLTGTELDRAYRTIFRENIERGVATDLLDTRLVD 122

Query: 276 -FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET 333
            FDL  LA  L  ERD  FEYL ++ LY RYFL  N G  +E+PQAF+MRVAMGLA++E 
Sbjct: 123 RFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAVEED 182

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           +   RA EFY++LS   F  STPTLF+SGT HPQLSSC+LTTVPDDL GIF A + +A L
Sbjct: 183 DPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHHAQL 242

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+SGGLGNDWTP+R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CAYL 
Sbjct: 243 SKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYLA 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH+D   F+DL++ TGD+RRRT DMNTA WIPDLFM+RV     WTLFSPDEV DLH+ 
Sbjct: 303 IWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDLHEA 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G+ F   Y  YE+ A+ G+I+ F  + A  LWR +LT LFETGHPW+TFKDPCNI SPQ
Sbjct: 363 TGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIGSPQ 422

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            H G + SSNLCTEITLN+S++E AVCNLGS+N   H  + + D D L  T+ TA+R+LD
Sbjct: 423 DHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMRMLD 482

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV+D+  +  E+A+ SN  HR +GLG MGF  AL  + +P  S EAVE A+   EF+++H
Sbjct: 483 NVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFVAYH 542

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKR 752
           AI  S ELA ERGAY SF+GS WD+ + P D++ LL E R  E+   RT  L WD ++K 
Sbjct: 543 AIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERGREIPTERTETLEWDAVRKS 602

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFT+VN  LV +L++
Sbjct: 603 IAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVADLRE 662

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           RDLWD+ M   +KYHDGSI  IE IP+DL++++  AFEIDP   +   + RQ WIDQ+ S
Sbjct: 663 RDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQSVS 722

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            N++     G  LD IY  AW +GLKTTYYLR+  A+ VEKSTL
Sbjct: 723 HNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTL 766


>gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 845

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/801 (48%), Positives = 534/801 (66%), Gaps = 16/801 (1%)

Query: 162 LEMIVEEACSGLQDVSSKIVL----SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
           +  I+ +A +G +DV +  V+    +ET +N+YDG S  ++  AL   +   IE++P Y 
Sbjct: 12  VRTILNQARTGYEDVLTDEVMDRLVTETERNLYDGASIDEVYEALEGVTTARIERDPAYK 71

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-- 275
            V A     +  R V     ++  +    +    Y E F   +E GV   LL E ++D  
Sbjct: 72  YVAADIHRRRYFRRV---TGEQLSETADDDTATTYRETFAANLERGVDEDLLDERLLDGR 128

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKET 333
           FD+  LA+ L  ERD  F+Y+ +  L  RYF+   ++G  +E+PQAF+MRVAMGLA++E 
Sbjct: 129 FDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRVAMGLAIEED 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           + + RA+EFY++LS   F  STPTLF+SGT HPQLSSC+LTTV DDL  IF + + +A L
Sbjct: 189 DPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIFDSYKHHAQL 248

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+SGGLGNDWT +R  GA I  T  +S G +PFLK++ND   A+N+ GKR+GA C YLE
Sbjct: 249 SKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAACGYLE 308

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH+D   FLDLR+NTGD+RRRTHDMNTA W+PDLFM+RV  +  WTLFSPDEV +LH+ 
Sbjct: 309 AWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSPDEVPELHET 368

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG+EF   Y  YE +A+ GE++ +  + A  LWR MLT LFETGHPWITFKDPCN+RSPQ
Sbjct: 369 YGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFKDPCNVRSPQ 428

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            HVG VHSSNLCTEITLN+S+EE AVCNLGS+NL  H A+++ D + LA TI TA R+LD
Sbjct: 429 DHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADTIETATRMLD 488

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV+D+  +  ++A+ SN  HR +GLG+MGF  AL  +    AS EAVE A+   EF+S+H
Sbjct: 489 NVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAANRWQEFVSYH 548

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKR 752
            I  S  LA+ERGAY +F+GS WD+G+ P D++  L AE   E+  +R+  + WD ++  
Sbjct: 549 TILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERGREIPTDRSETMDWDRVRDH 608

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNSN MAIAPTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N  LV++LK 
Sbjct: 609 IAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVINEQLVDDLKA 668

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LWD+ M+  +K+ DGSI  +  IP+++++++ +AFEIDP   +   + R +WIDQ+ S
Sbjct: 669 EGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHRGQWIDQSIS 728

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGKLNAVPV 928
            N++     G  LD +Y+ AW +G+KTTYYLR+  A+ +EKSTL     G   + N    
Sbjct: 729 HNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMAEYGRTQRRNESEA 788

Query: 929 TDPNSSTHSLGIPSSCTSDTE 949
           T    S  + G  ++   DT+
Sbjct: 789 TADRDSNDNGGNVTAADGDTD 809


>gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
 gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
          Length = 797

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/799 (50%), Positives = 530/799 (66%), Gaps = 18/799 (2%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           +E I+E+A     + S   +     ++ Y+G S  ++  A+I +    I++ P Y  V A
Sbjct: 11  IEAILEQAWDDRAEGSPDDIARAARRDCYEGASREEVYEAIIGALTARIDRVPEYRTVAA 70

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R      RR     V   P      + +  Y + F   IE GV+A LL E M ++DL  L
Sbjct: 71  RVFR---RRYFEERVGVAPD-----DHEAAYRDSFVASIERGVEADLLDERMGEYDLSRL 122

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRA 339
           A  L+  RD   +Y+ ++ L  RYFL      IE+PQ F+MRVAMG+AL+E   E+EK A
Sbjct: 123 AEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPEEREKYA 182

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            EFY+LLS+  F+ STPTLF++GT HPQLSSC+LTTVPDDL GIF A +E+A L+K+SGG
Sbjct: 183 KEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKLSKWSGG 242

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           LGNDWTP+R  GA I  T  +S G +PFLK+AND   A+N+ GKR+GA CAYLE WH+D 
Sbjct: 243 LGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLEAWHMDF 302

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLDLR+NTGD+RRRTHDMNTA W+PDLFMKRV  +  W LFSP+EV DLH  YG+EFE
Sbjct: 303 PAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGTYGREFE 362

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             YE YER+A+ GE+  + +  A  LWR+ LT LFETGHPWITFKDPCN+RSPQ H GV+
Sbjct: 363 ERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQDHAGVI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           +SSNLCTEITLN+S EETAVCNLGS+NL  H   +  D + LA T+ TA+R+LDNV+D+N
Sbjct: 423 NSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLDNVVDLN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +  EKA++SN  HR +GLG MGF  AL    IP  S +AVE AD + E +S+HAI  S 
Sbjct: 483 FYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYHAILGSS 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGM 758
           ELA ERGAY S++GS WD+ +FP D++ +L E R  E+ ++   RL W  +++ V   GM
Sbjct: 543 ELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERGREIPIDVEERLDWGRVREHVSEHGM 602

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N  LV++L++R LW +
Sbjct: 603 RNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLRERGLWTD 662

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   + YHDGSI  I+ IP+D+ ++H  AFEIDP   +  ++ R  WIDQ QS N++  
Sbjct: 663 EIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQSHNVFFP 722

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---KGVDGKLNAVPVTDPNSST 935
              G  L  +Y  AW +GLKTTYYLR+  A+ VEK+TL   +  D +       D     
Sbjct: 723 STDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLDMREYDDTQFRDSDDDDDEDEG 782

Query: 936 HSLGIPSSCTSDTECEVCQ 954
           +  G+PS    D  CE CQ
Sbjct: 783 N--GLPS--VEDPTCEACQ 797


>gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium
           sp. NRC-1]
 gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 804

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/781 (49%), Positives = 524/781 (67%), Gaps = 18/781 (2%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+E  +N YD  +  +   AL+ +    I++ P Y  V  R L E+L R ++       
Sbjct: 35  ILTEATRNAYDDATTDERYDALLGALTGRIDRHPAYKTVAGRVLRERLERRLVDDYDPAT 94

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           + A   +        F   I+ G+ A LL E M D+DL  LA+ +   RD   +Y+ +  
Sbjct: 95  RDAATRQA-------FRDGIQRGLDADLLDERMGDYDLNRLADAITPARDDRLDYMAMDT 147

Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPT 357
           L  RYFL   +    E+PQ F+MRVAMG+AL+E   ++E+ A+EFY+ LS+  F+ STPT
Sbjct: 148 LRQRYFLREPDADPFELPQPFWMRVAMGVALREDPADREEYAIEFYDALSTLRFVHSTPT 207

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LF++GT H QLSSC+LTTVPDDL GIF A +E+A L+K+SGGLGNDWTP+R  G+ I  T
Sbjct: 208 LFHAGTTHAQLSSCYLTTVPDDLDGIFDAYKEHAKLSKWSGGLGNDWTPLRAAGSLIEST 267

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             +S G +PFLK++ND   A+N+ GKR+GA  AYL  WH+D   F DLR+NTGD+RRRTH
Sbjct: 268 GVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYLACWHLDFPAFCDLRRNTGDERRRTH 327

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTA WIPDLFM+RV  +  WTLFSP E  DL++LYG +F   Y  YE  AD G+I+ F
Sbjct: 328 DMNTAAWIPDLFMERVRADKQWTLFSPKETGDLYELYGSDFAERYREYEAMADDGDIQRF 387

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ H G V SSNLCTEITLN+S EET
Sbjct: 388 ERVDATDLWRTMLTRLFETGHPWLTFKDPCNVRSPQDHAGTVRSSNLCTEITLNTSEEET 447

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           AVCNLGS+NL  H  +   D ++L+ T+ TA+R+LDNV+D+N +  E A++SN  HR +G
Sbjct: 448 AVCNLGSVNLARHLDDGDIDREQLSETVETAMRMLDNVVDLNFYPTENAERSNMRHRPVG 507

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MGF  AL  + +P AS +A++ AD   E++++HAI AS +LA ERG Y S++GS WD
Sbjct: 508 LGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGASADLAAERGTYESYEGSKWD 567

Query: 718 QGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + VFP D++  L   R  E+ + R  RL W ++++RV T GMRNSN MA+APTATI+ I 
Sbjct: 568 RDVFPQDTVDRLESERGREIPVPREERLDWSDVRQRVATHGMRNSNTMAVAPTATISTIA 627

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G + SI+P Y NLYVKSNMSGDFTVVN  LV +L++RDLW E +   L YHDGS+  ++ 
Sbjct: 628 GTTPSIEPVYSNLYVKSNMSGDFTVVNDRLVADLEERDLWTEELRDKLTYHDGSVQELDA 687

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           +P+D+++++ TAFEIDP   +  A+RR  WIDQ+QS+N++  E  G KL  +Y+ AW +G
Sbjct: 688 VPEDVQELYRTAFEIDPRHQLRLAARRGVWIDQSQSVNVFFPETDGSKLSEVYQTAWELG 747

Query: 897 LKTTYYLRSRSATSVEKSTL---KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LKTTYYLR+  A+ +EK+TL   +  D +       +       L  PS    D  CEVC
Sbjct: 748 LKTTYYLRTLGASQIEKTTLDMDEYDDTQFRGDDDGEDADGDGDL--PS--VEDPTCEVC 803

Query: 954 Q 954
           Q
Sbjct: 804 Q 804


>gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 815

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/742 (50%), Positives = 506/742 (68%), Gaps = 10/742 (1%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + + SE  + +YDG S  ++  A+  +    +E+EP + ++ A    +    EV+     
Sbjct: 33  ETLASEIERTLYDGASTDEVYQAVTQAFSARVEREPAFKRIAAAAFRQGYYHEVIG---- 88

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLG 297
             +    +E+   Y   F   +E  V+   L E + + FDL  LA+ L+ +RD  FEY+ 
Sbjct: 89  --ENLRGYELDREYRATFIENLERAVEIGRLDERLPERFDLDDLASYLEPDRDERFEYMA 146

Query: 298 LQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           ++ L  RYFL    NG R+E+PQAF+MRVAMGLA++E + ++RA EFY++LS   F  ST
Sbjct: 147 METLAQRYFLKTEENGERLELPQAFWMRVAMGLAVEEDDPQRRAKEFYDVLSKLEFTPST 206

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTLF+SG+ HPQLSSC+LTTV DDL  IF +   +A L+K+SGGLGNDWT +R  GA I 
Sbjct: 207 PTLFHSGSTHPQLSSCYLTTVSDDLEHIFDSYNHHAHLSKWSGGLGNDWTNLRASGALIE 266

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T  +S GV+PFL+++ND   A+N+ GKR+GA CAYL  WH+D   F+DL++NTGD+RRR
Sbjct: 267 STGVESTGVVPFLRISNDVTAAINRSGKRRGAACAYLACWHLDFPAFIDLKRNTGDERRR 326

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           T DMNTA WIPDLFMKRV     WTLFSPDEV DLHDL G+ F   Y  YE+QA+ GE +
Sbjct: 327 TPDMNTAAWIPDLFMKRVEAGEEWTLFSPDEVPDLHDLSGEAFAEKYREYEKQAEAGEFR 386

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            + ++ A  LWRK LT LFETGHPW+TFKDPCN+RSPQ H G VHSSNLCTEITLN+S +
Sbjct: 387 QYERVDAEELWRKTLTRLFETGHPWLTFKDPCNVRSPQDHAGTVHSSNLCTEITLNTSED 446

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E AVCNLGS+N   H +  + ++D LA TI TA+R+LDNV+D+  +  ++A+ SN  HR 
Sbjct: 447 EHAVCNLGSVNFATHVSGGELNHDHLAETIETAMRMLDNVVDLCFYPTDEAEHSNMQHRP 506

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG MGF  AL  L IP  S +A+E A+   EF+S+HAI  S +LA ERG Y S++GS 
Sbjct: 507 VGLGTMGFHDALMELGIPMDSEDAIEKANRWQEFVSYHAIHNSSKLAAERGTYPSYEGSK 566

Query: 716 WDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++  L AE   E+   R   L W  +++ V+  GMRNSN MAIAPTAT++ 
Sbjct: 567 WDRGMLPQDTVDTLEAERGREIPTEREETLDWYVVREHVEEHGMRNSNTMAIAPTATVST 626

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + SI+P Y NLYVKSNMSG+FTVVN  LV++LK  +LWDE M+  +KYHDG+I  I
Sbjct: 627 INGTTPSIEPMYSNLYVKSNMSGEFTVVNDHLVDDLKALELWDEEMVDRIKYHDGTIQEI 686

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           + +PDDLK+++  AFEIDP   +   + RQ WIDQ+ S N++     G  LD +Y+ AW 
Sbjct: 687 DAVPDDLKELYRGAFEIDPRHQLRLTAHRQTWIDQSVSHNVFFPSTDGTLLDDVYKTAWR 746

Query: 895 MGLKTTYYLRSRSATSVEKSTL 916
           +GLKTTYYLR+  A+ +EKSTL
Sbjct: 747 LGLKTTYYLRTLGASGIEKSTL 768


>gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus
            watsonii C-113]
 gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus
            watsonii C-113]
          Length = 1336

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/541 (65%), Positives = 422/541 (78%), Gaps = 15/541 (2%)

Query: 425  IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +PF   LKV  D     T   V+ GGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRT
Sbjct: 800  LPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 859

Query: 477  HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            HDMNTANW+PDLFMKRV +N GWTLFSPDE  DLHDL G+ FE AY  YE +A RGEIK 
Sbjct: 860  HDMNTANWVPDLFMKRVAENGGWTLFSPDETPDLHDLVGQAFEAAYLGYEGKASRGEIKN 919

Query: 537  FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            F+K  AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E
Sbjct: 920  FKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDE 979

Query: 597  TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             AVCNLGSINL  H   +  +  KL  TI TA+R+LDNVID N +++  A++SN  HR +
Sbjct: 980  IAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPV 1039

Query: 657  GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            GLGLMGFQ AL+   IPYAS  AVE AD SME IS++AI AS +LA ERG+Y +FK SLW
Sbjct: 1040 GLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSDLAAERGSYPTFKDSLW 1099

Query: 717  DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             QG+ PIDSI LL E R      +R+  L WD L+++VKT+GMRNSNCMAIAPTATI+NI
Sbjct: 1100 SQGILPIDSISLLEENRGGYFQQDRSRTLDWDSLREQVKTVGMRNSNCMAIAPTATISNI 1159

Query: 776  CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            CGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS   I+
Sbjct: 1160 CGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKAQNLWDEVMVNDLKYFDGSAQPID 1219

Query: 836  RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            RIPD+LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ 
Sbjct: 1220 RIPDELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVR 1279

Query: 896  GLKTTYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVC 953
            GLKTTYYLRS  AT VEKST+  G   KLNAV     +S   +   P +C+  D +CE C
Sbjct: 1280 GLKTTYYLRSLGATHVEKSTMTSGQANKLNAV----QSSYIQTSEAPQACSILDPDCEAC 1335

Query: 954  Q 954
            Q
Sbjct: 1336 Q 1336



 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/411 (56%), Positives = 298/411 (72%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG VT FDPSKI+ A+ KAF+A+EG GA+ S R+   +++L EQ V    +  ++
Sbjct: 34  RVIRRNGKVTGFDPSKIAVAMTKAFLALEGNGAAMSKRIHQTVEDLAEQVVEACTRRLET 93

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              VHIE IQDQVE +LM+ GHHKI R YVLYREER+  RA  +         P +++ +
Sbjct: 94  GGTVHIEGIQDQVELALMRGGHHKIARAYVLYREERARERAQGAAKNKKKATEPPIQVTL 153

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG     +  RL  I+EEAC  L +   + +L+ET +N++DG++E D+E ALI S+RT 
Sbjct: 154 ADGHTAPLDKARLTHIIEEACQNLPETQPQAILNETLRNLFDGVAEQDVERALIMSARTF 213

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IEKEPNY+  TAR LL+ LRRE L+ ++     AT  EM   YPEYF  YI +G + +L+
Sbjct: 214 IEKEPNYSYATARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 273

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  +DL  L   L+ ERDF F YLGLQ LYDRYF+H  G+R E+PQAFFMRVAMGLA
Sbjct: 274 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 333

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           + E E+E+RA+EFY LLSSF FM STPTLFNSG+  PQLSSC+LTTVPDDL GI+ A+++
Sbjct: 334 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 393

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKV NDTAVAVNQ
Sbjct: 394 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 444


>gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
 gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
          Length = 1336

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/541 (65%), Positives = 419/541 (77%), Gaps = 15/541 (2%)

Query: 425  IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +PF   LKV  D     T   V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRT
Sbjct: 800  LPFVYDLKVEGDPSYMTTTALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRT 859

Query: 477  HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            HDMNTANW+PDLFMKRV ++ GWTLFSPDE  DLHDL G+ FE AY  YE +A RGEIK 
Sbjct: 860  HDMNTANWVPDLFMKRVAEDGGWTLFSPDETPDLHDLVGQAFEAAYLGYEDKASRGEIKN 919

Query: 537  FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            F+K  AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E
Sbjct: 920  FKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDE 979

Query: 597  TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             AVCNLGSINL  H   +  +  KL  TI TA+R+LDNVID N +++  A++SN  HR +
Sbjct: 980  IAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPV 1039

Query: 657  GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            GLGLMGFQ AL+   IPYAS  AVE AD SME IS++AI AS  LA ERG+Y +F+GSLW
Sbjct: 1040 GLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKASSNLAAERGSYHTFEGSLW 1099

Query: 717  DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             QG+ PIDSI LL E R      +R+  L WD L+++VKT+GMRNSNCMAIAPTATI+NI
Sbjct: 1100 SQGLLPIDSISLLEESRGSYFQQDRSHTLDWDSLREQVKTVGMRNSNCMAIAPTATISNI 1159

Query: 776  CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            CGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS   I+
Sbjct: 1160 CGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKAQNLWDEVMVNDLKYFDGSAQPID 1219

Query: 836  RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            RIP++LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EP+GKKLD +Y+ AW+ 
Sbjct: 1220 RIPEELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPNGKKLDNLYKLAWVR 1279

Query: 896  GLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVC 953
            GLKTTYYLRS  AT VEKST+      KLNAV       S      P +C+  D +CE C
Sbjct: 1280 GLKTTYYLRSLGATHVEKSTMTSDQANKLNAVQSGYIQKSE----APQACSVQDPDCEAC 1335

Query: 954  Q 954
            Q
Sbjct: 1336 Q 1336



 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/411 (57%), Positives = 299/411 (72%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG VT FDPSKI+ A+ KAF+A+EG GA+ S R+   ++ LTEQ V    +  ++
Sbjct: 35  RVIRRNGKVTGFDPSKIAVAMTKAFLALEGNGAAMSKRIHQTVEVLTEQVVEACTRRLET 94

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              VHIE IQDQVE +LM+ GHHKI R YVLYREER+  RA  +       I P +++ +
Sbjct: 95  GGTVHIEGIQDQVELALMRGGHHKIARAYVLYREERARERAQTAAKNKKKTIEPPIQVTL 154

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG     +  RL  IVEEAC  L +   + +++ET +N++DG++E D+E ALI S+RT 
Sbjct: 155 ADGRTAPLDKARLTRIVEEACQNLPETQPQAIINETLRNLFDGVAEQDVERALIMSARTF 214

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IEKEPNY+  TAR LL+ LRRE L+ ++     AT  EM   YPEYF  YI +G + +L+
Sbjct: 215 IEKEPNYSYTTARLLLDSLRREALSFIHGMETHATQQEMIERYPEYFAAYIRQGAEIQLI 274

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  +DL  L   L+ ERDF F YLGLQ LYDRYF+H  G+R E+PQAFFMRVAMGLA
Sbjct: 275 DSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLA 334

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           + E E+E+RA+EFY LLSSF FM STPTLFNSG+  PQLSSC+LTTVPDDL GI+ A+++
Sbjct: 335 INEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKD 394

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKV NDTAVAVNQ
Sbjct: 395 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVTNDTAVAVNQ 445


>gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter
            vinelandii DJ]
 gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor
            [Azotobacter vinelandii DJ]
          Length = 1338

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/547 (63%), Positives = 426/547 (77%), Gaps = 18/547 (3%)

Query: 423  GVIPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             V PF   LKV  D     T+   + GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRR
Sbjct: 795  AVKPFVFDLKVEGDESYMTTSGLAHNGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRR 854

Query: 475  RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
            RTHDMNTANWIPDLFMKRV ++  WTLFSP +V DLHDL G+ FE  YE YE     G+I
Sbjct: 855  RTHDMNTANWIPDLFMKRVFEDGQWTLFSPSDVRDLHDLTGRAFEERYEYYEALTQYGKI 914

Query: 535  KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            K+F+ I+A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S 
Sbjct: 915  KLFKTIAAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSD 974

Query: 595  EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
             E AVCNLGSINL+ H  + + D +KL+ T++TAVR+LDNVIDIN ++++ A+ +N  HR
Sbjct: 975  SEIAVCNLGSINLVNHINDGRLDTEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHR 1034

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +GLG+MGFQ AL+L HI Y S  A+  AD SME IS++AI AS +LA+ERGAYSSF+GS
Sbjct: 1035 PVGLGIMGFQDALYLQHIAYGSEAAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGS 1094

Query: 715  LWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            LW +G+ P+DS+ +LAE R    + ++R+S L W  L++RVK  GMRNSN MAIAPTATI
Sbjct: 1095 LWSRGILPLDSLDILAEQRGTKYIEVDRSSTLDWAPLRERVKK-GMRNSNIMAIAPTATI 1153

Query: 773  ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +NI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R+LWD  M++DLKY+DGS+ 
Sbjct: 1154 SNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARELWDGVMVNDLKYYDGSVQ 1213

Query: 833  NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
             IERIP DLK ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR A
Sbjct: 1214 QIERIPTDLKALYATAFEVETKWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 1273

Query: 893  WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSST---HSLGIPSSCTSDT 948
            W  GLKTTYYLR+ +ATS EKST+    GKLNAV  V D + S        +P +C+ D 
Sbjct: 1274 WFRGLKTTYYLRALAATSAEKSTIN--TGKLNAVSSVIDESLSAAEPKPAPVPQACSIDN 1331

Query: 949  -ECEVCQ 954
             +CE CQ
Sbjct: 1332 PDCEACQ 1338



 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/428 (53%), Positives = 306/428 (71%), Gaps = 4/428 (0%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+ P LA   P +++   VIKRNG V ++   KI+ AI KAF+AVEG  A+ S R+ + +
Sbjct: 19  DSTPDLAATAPGQLR---VIKRNGTVVAYTDDKITVAITKAFLAVEGGTAAASSRIHETV 75

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ  T   +   S   +HIE+IQDQVE +LM++G HK+ R+YV+YRE R+  R   
Sbjct: 76  ARLTEQVTTTFRRRMPSGGTIHIEEIQDQVELALMRAGEHKVARDYVIYREARAQERKRA 135

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +  +  A   P +++   DG L+  +  RL+ I+ EAC GL +V + ++  ET KN+YDG
Sbjct: 136 AAVQEVAQPHPSIRVARADGVLVPLDMGRLDTIIGEACEGLAEVDAALIQKETLKNLYDG 195

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + ATHHEM  LY
Sbjct: 196 VAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESATHHEMADLY 254

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                 Y+E+G++  LL   + +FDLV L   L +ERD  F YLGLQ LYDRYFLH +G 
Sbjct: 255 ARALPVYVEKGIEFELLDPKLREFDLVRLGAALDHERDQQFTYLGLQTLYDRYFLHKDGI 314

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLA++E +KE+RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 315 RFELPQVFFMRVAMGLAIEEPQKEERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 374

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 375 LTTVPDDLSGIYNAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 434

Query: 433 DTAVAVNQ 440
           DTAVAVNQ
Sbjct: 435 DTAVAVNQ 442


>gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like
           [Xenopus (Silurana) tropicalis]
          Length = 1234

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/587 (59%), Positives = 429/587 (73%), Gaps = 14/587 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+++RNG V +F+P KI+ A+MKAF+AV G   + S  V++++  LT   V  L +    
Sbjct: 34  QILRRNGSVAAFEPQKIAVALMKAFLAVHGTQGAASASVREVVDELTHTVVRALARSRPG 93

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               HIED+QDQVE  LM+ GHH++ R YVLYRE R+  RA Q         A  +   +
Sbjct: 94  GGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRERRAQERAQQQAQLLPQAPAIHV---V 150

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  RL  +V  ACSGL  +V  + +++ET +N+YDG+   ++  A I ++RT
Sbjct: 151 DNGQRVLLDPLRLRALVASACSGLSSEVQPEPIVAETLRNLYDGIPMDEVYKASILAART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P+Y   TAR LL  + REVL       Q      M   Y   F + I++GV   L
Sbjct: 211 LIEKDPDYTYATARLLLHTIVREVLG------QDVAPAAMGEAYANSFPQCIQKGVDNEL 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  L+ +RD  F+YLGLQ LYDRYFLH+  +RIE+PQ+FFMRVAMGL
Sbjct: 265 LDPQLLQFDLPRLAKALQAQRDLQFDYLGLQTLYDRYFLHVRKARIELPQSFFMRVAMGL 324

Query: 329 ALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AL+E    T   +RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPD+L GI+
Sbjct: 325 ALREGDLQTTGTERAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDNLEGIY 384

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 385 EAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKR 444

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP
Sbjct: 445 KGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFSP 504

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E  DLHDLYG+ FE AY  YE  ADRGE+ +F++++AV LWRKML+MLFETGHPWITFK
Sbjct: 505 SETPDLHDLYGQAFERAYCAYEAMADRGELTLFKRVAAVDLWRKMLSMLFETGHPWITFK 564

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           DPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H 
Sbjct: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNTSETETAVCNLGSVNLLRHI 611



 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 160/304 (52%), Positives = 218/304 (71%), Gaps = 17/304 (5%)

Query: 666  ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            +L+ L IPYAS  AV  ADESME I ++A  AS ELA+ERG Y+S++GSLW++G+ P+D+
Sbjct: 933  SLYELRIPYASDAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDT 992

Query: 726  IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            + LL + RD  + ++R++RL WD L+K++   GMRN+NC+AIAPTATI+NI GV  SI+P
Sbjct: 993  LNLLQQARDGHVQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEP 1052

Query: 785  SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            S+ NL VKSN+SG+FTVVN++LV +LK+  LWD+ M+ DLK+  GS+  I+R P DLK +
Sbjct: 1053 SFGNLSVKSNLSGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKAL 1112

Query: 845  HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR
Sbjct: 1113 YATAFEVEPRWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLR 1172

Query: 905  SRSATSVEKSTLKGVDGKLNAVPVTDPN--------------SSTHSLGIPSSCTSDTEC 950
            ++SAT VE ST+     +LNAV    P+              ++T +  +      D  C
Sbjct: 1173 TQSATHVEMSTVN--KRQLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDPGC 1230

Query: 951  EVCQ 954
            E CQ
Sbjct: 1231 EACQ 1234


>gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 610

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/627 (55%), Positives = 434/627 (69%), Gaps = 23/627 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KRNG   +F+ + I+ A+ KAF A  G+ AS+S  ++++I ++ E  VT  +    S 
Sbjct: 4   VVKRNGQPVAFNGALIAAALSKAFNATLGESASQSSHLREVIASIVE-GVTNAVAGKPS- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM        R Y+LYREER+ VR          P AP      D
Sbjct: 62  --VDVETIQDLVERGLMAKDEAATARAYILYREERNKVRRP--------PEAPAQLYYTD 111

Query: 151 DGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           +       + + L   + +AC  L +VS+  + ++T KN + G+   D+  A++ ++R +
Sbjct: 112 EADQTHPLSVELLTDYLAQACQDLPNVSASKLAADTLKNAFPGIKWGDVLKAMLITTRAM 171

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE+EP+Y+ V AR L  +L+ E    V      AT       Y +     +E GVK   L
Sbjct: 172 IEQEPDYSFVNARLLWLELKNES-RAVLGLGSDAT-------YADDLKAALEFGVKNDHL 223

Query: 270 HESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           +  ++D  FD+  L   L+ + D  F YLG Q LYDRYFLH NG + E PQ FFMRVAMG
Sbjct: 224 NPVLIDGTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMG 283

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L+E +  +RA+EFYNL SSF +M STPTLFN+GT   QLSSC+LTTVPDDL GI+ A+
Sbjct: 284 LSLEEKKPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAI 343

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGA
Sbjct: 344 HDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGA 403

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP + 
Sbjct: 404 VCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDA 463

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL GK FE  Y  YE  AD GEIKV+++I+A  LWRKML+MLFETGHPW+TFKDPC
Sbjct: 464 PDLHDLVGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPC 523

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + + D  KL  TI T
Sbjct: 524 NLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINT 583

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHR 654
           AVR+LDNVIDIN +++ +A+ SN  HR
Sbjct: 584 AVRILDNVIDINYYSVPQAENSNLKHR 610


>gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
 gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
          Length = 791

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/798 (44%), Positives = 494/798 (61%), Gaps = 64/798 (8%)

Query: 15  FPSLAYP-FPEKIKGVQVIKRN-GGVTSFDPS-------KISRAIMKAFMAVEGKGASRS 65
            P+++ P FP      QVI+R+  G TS  P        KI++A+  A   VEG+     
Sbjct: 14  LPAVSTPEFP------QVIRRDLPGDTSGKPRVVPWLGHKIAKAVSAACF-VEGQDDQIG 66

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           ++VQ  I+        RL +   S   VHIE +QD VE +L+  GH K+   Y  YR  R
Sbjct: 67  VQVQAEIE-------YRLRRERPS--FVHIEQLQDMVEETLIDLGHAKVALVYGKYRARR 117

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR----LEMIVEEACSGLQ-DVSSKI 180
           +   A + H      I P   ++ DDG  +   ++     +   +  A  GL+  ++   
Sbjct: 118 A---AEREHG-----IGP---VIEDDGQQLELATREQLGDIRARISFAKIGLKVTLNDDD 166

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT-TVYKK 239
           +L+   ++    L+  +    ++ ++++L++ + +     AR LL  +  E L   V   
Sbjct: 167 LLARLLRSTSISLTPVERRDTIVLNAKSLLDVDADARFFAARILLSYIYEETLPWKVADG 226

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
           PQ      ++  + + F  YI  G+    L   + +FDL  LA  L    D  F++LG+Q
Sbjct: 227 PQA-----LKEAHRKAFLEYIPRGIALGRLEPRLAEFDLKKLATALDPFADLQFDFLGIQ 281

Query: 300 ILYDRYFLHINGS------RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            LYDRY +H + S      R+E PQ F+MRVAMGL+++E E+E+RA +FY +  S     
Sbjct: 282 TLYDRYLIHTHDSVTGRKQRMEAPQVFWMRVAMGLSVQEPEREERAGQFYGIYKSRRACS 341

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           STPTLFN+GT HPQLSSC+L    D +  I    +  + L+K++GGLG  WT +RG GAH
Sbjct: 342 STPTLFNAGTMHPQLSSCYLLYCGDSIEEITETWRRFSHLSKWAGGLGCSWTAIRGAGAH 401

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           IHGTNG+S GVIPFLKV+ND A+AVNQGGKR GA+C+YLE WH D+E+FLDLRK TGDDR
Sbjct: 402 IHGTNGESSGVIPFLKVSNDIAIAVNQGGKRPGALCSYLELWHADIEDFLDLRKETGDDR 461

Query: 474 RRTHDMNTANWIPDLFMKR--------VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RRTH+MNTA+WIPDLFMKR        +T+ A W+LF   E  DL +L G+ FE  Y  Y
Sbjct: 462 RRTHNMNTAHWIPDLFMKRLKAISDGTLTKEATWSLFRTSETPDLPELSGRAFEERYLQY 521

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  A  G++   RK+  +ALW++ML MLFETGHPW+TFKDPCN+RSPQ H GV+H+SNLC
Sbjct: 522 EALAAEGKLWS-RKVRVLALWKRMLEMLFETGHPWMTFKDPCNLRSPQDHTGVIHNSNLC 580

Query: 586 TEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           TEITLN+SS+E AVCNL SINL AH   +   D+D+L +TI   +R+LDNVIDIN + ++
Sbjct: 581 TEITLNTSSDEVAVCNLASINLAAHLREDGALDHDRLRATITVLMRMLDNVIDINFYPVD 640

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A  +N  HR +GLGLMG Q AL+   I + +PEAV   DE++E I+++A  AS +LA E
Sbjct: 641 AAANANLRHRPVGLGLMGLQDALYDKGIAFDTPEAVAFNDEALEAIAYYAYEASSDLAAE 700

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           RG Y ++ GS WD+G+ P+D++  L + R   L ++RTSRL W  L++++   GMRNSNC
Sbjct: 701 RGRYQTYAGSKWDRGLMPLDTLAHLEQQRGVPLMVDRTSRLDWTALRQKIAQQGMRNSNC 760

Query: 764 MAIAPTATIANICGVSQS 781
           +AIAPTATI+NI G  ++
Sbjct: 761 LAIAPTATISNILGARRA 778


>gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 502

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/505 (60%), Positives = 376/505 (74%), Gaps = 21/505 (4%)

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE 
Sbjct: 1   NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60

Query: 528 QADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             +  G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCT
Sbjct: 61  LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EITLN++ +E AVCNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +A
Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERG
Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           AY +F+GSLW +G+ P+DS  +L E R E  ++++    L W  ++ RV+  G+RNSN M
Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 477

Query: 942 -----------SSCTSD-TECEVCQ 954
                       +C  D  +CE CQ
Sbjct: 478 EAAPAGPAPVPKACAIDEPDCEACQ 502


>gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
          Length = 790

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/838 (42%), Positives = 498/838 (59%), Gaps = 76/838 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G    F+  ++E  V  A  G   V S+ V+ +    +YDG+  SD++ ALI 
Sbjct: 1   MNVTKRNGATEPFSPSKIEKAVNWAVDG-TSVESQEVIDKAILLIYDGIKTSDIQQALIK 59

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  L+   + + + V+AR LL  L +    TV     K +    Q  YP +   Y+E+G
Sbjct: 60  GAAKLVSATKADASLVSARLLLLDLYK----TVCGVNGKVSGGGFQ--YP-HIKDYLEKG 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN------------- 310
           V  +LL   ++++DL  +   +K ERD +F YLGL  L DRYF+  N             
Sbjct: 113 VSLKLLDPELLNYDLERINAAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMS 172

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           G+ IE+PQ F+MRVAMG+ALKE  + + +V   +Y L S   ++ STPTLFN+GT HPQL
Sbjct: 173 GNIIELPQHFWMRVAMGVALKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQL 232

Query: 369 SSCFLTTVPDDLYG---------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           SSC+L  V D +           IFGA++E A+L+K++GG+G DWTPVRG    I GTNG
Sbjct: 233 SSCYLNQVSDTIAADEGDNRFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNG 292

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GV+P++KV N+TAVAVNQGGKRKG+V  YLE WH D   F +L++ +GDDRRR HD+
Sbjct: 293 ISSGVVPYIKVQNNTAVAVNQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDV 352

Query: 480 NTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
             A W+PDL ++R    NA W+ FSP    +LH+LYG++F   YE  E     GE     
Sbjct: 353 FPAAWVPDLLIERKEDPNAMWSFFSPKRFPELHELYGEDFVKRYEELEAA---GEYDF-- 407

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A+ +WR +LT LFETGHPWIT+KD CN R+PQQH GV+H SNLCTEITLN+S +ETA
Sbjct: 408 QLPAIQVWRHLLTNLFETGHPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETA 467

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGSIN L+   +     ++L   IR A+R LD+VID+N +  ++A  SN  HR IGL
Sbjct: 468 VCNLGSIN-LSQVMSAPNPLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGL 526

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG+   L    + + S E ++ AD   E IS+ AI AS +LAQERG+Y SF+GS W +
Sbjct: 527 GVMGYYEWLVKQGVDFESEEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSK 586

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+ PID+  L+ + +      R  R  W+ L+++VK  GMRNSN MAIAPTATI+NI G 
Sbjct: 587 GILPIDNAKLMEDGKPFFDQPR--RFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGT 643

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +Q  +P +   Y KSN+ G + VV+  +            A + D KYH           
Sbjct: 644 TQCTEPPFLLEYFKSNLGGTYQVVDPAI------------AHVGD-KYH----------- 679

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
                +   ++ +D +++I++A+ RQKWIDQ+QS NL+  +  +G+ LD  Y  A  +GL
Sbjct: 680 -----LLKESYYVDQLYIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGL 734

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           KTTYYLR++S      S    V  +L    +   +  T S   P  C+  D +CE CQ
Sbjct: 735 KTTYYLRNQSDAEKSASMRTKVIAELANAALGKLSEPTES--APKMCSILDPDCESCQ 790


>gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 792

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 348/821 (42%), Positives = 490/821 (59%), Gaps = 59/821 (7%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + +   +G L   +  ++   V+   +GL  V +  V S+T   +YDG +  +L+   
Sbjct: 22  PVMHVRKRNGELEPVDVNKIVRAVQRCSAGLSQVDAIRVASKTIGGLYDGATTRELDAIS 81

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++ +LI +EP Y+K+ AR LL  + +EV                Q L+   F + IE 
Sbjct: 82  IDTAASLIAEEPQYSKLAARLLLGTILKEVAG--------------QNLHS--FSQSIEY 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA----FEYLGLQILYDRYFLHINGSR--IEM 316
             +  +++ +  +F   + A  L Y  D      FE+ GL+ +YDRY L    SR  IE 
Sbjct: 126 AHQEGVVNAATAEFVRTH-ARKLNYAIDEQLSDRFEFFGLRTVYDRYLLRDPLSRKVIET 184

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FF+RVA GLA    E    A+EFY L++S  +M S+PTLFNSGT+HPQ+SSC+L   
Sbjct: 185 PQYFFLRVACGLAGTPHE----AIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSCYLHDS 240

Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           P D L  I+   ++ A+L+K+SGG+G  +  VR  G+ I  TNG S G++P+L+  + + 
Sbjct: 241 PSDSLESIYDTYKDVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSV 300

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AVNQGGKRKGA C YLE WH DVE+FL+LR+NTGD  RRT+++N ANWIPDLFM+RV +
Sbjct: 301 AAVNQGGKRKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVEE 360

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+LF P  V  L DLYG EF+ AYE  E      E    R+I A  L+ +M+  L E
Sbjct: 361 DGMWSLFDPKVVPQLPDLYGVEFDAAYEKAE-----AEQLYARQIKARDLYARMMRSLAE 415

Query: 556 TGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           TG+ W+TFKD CN++  Q  +   VVH SNLCTEIT  +S +ETAVCNLGSINL  H AN
Sbjct: 416 TGNGWMTFKDACNLKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLARHVAN 475

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD++KLA T+R AV +LD VIDIN + + +A  +N   R +GLGLMG Q     L +P
Sbjct: 476 GAFDFEKLAETVRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFFQLRMP 535

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA +++    E I +HA++AS ELA+++GA+ +F  +    G    D  G+  +  
Sbjct: 536 FDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGV--KPA 593

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           DE          W+ L+ R++  G+RNS  +AIAPTATIA+I G  +  +P   NL+ + 
Sbjct: 594 DEAR--------WNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLFKRE 645

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F  VN +LV +LK+R LW+E +   LK  +GS+  I+ IPDDLK+I+ T +E+  
Sbjct: 646 TLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWELPM 705

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             +I+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  AW  GLKTTYYLRSR AT + K
Sbjct: 706 RAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPATRIAK 765

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +T+        AV          SL  P S      CE CQ
Sbjct: 766 TTVASAKNATAAVAC--------SLENPGS------CEACQ 792


>gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium
           roseum DSM 5159]
 gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 770

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 323/760 (42%), Positives = 444/760 (58%), Gaps = 23/760 (3%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I S    +   P   +  A  LLEK+ RE                    YPE+F R++E 
Sbjct: 26  ILSCLQQLPDRPEAEREAAALLLEKIARE------------ADDGTPLPYPEHFRRFVER 73

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320
           G+    L   +  F L  LA  L   RD    Y  L  L DRY +    +R  +E PQA 
Sbjct: 74  GIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVRDPETRQLLERPQAL 133

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           FMRVAMGLAL E  + +   A+ +Y+L+SS  ++ STPTLFN+GT H QL+SC+L  V D
Sbjct: 134 FMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTPHHQLASCYLAEVED 193

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I G+  E  MLAKY+GG+G   T +R  GA + G NG S G+IPFL + +    ++
Sbjct: 194 SLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGLIPFLHLYDALIASI 253

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG+R+G +C YLE WH++VE FLDLR+N GD  RRTH +NTA WIPD F++RV  +  
Sbjct: 254 SQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALWIPDEFLRRVETDDL 313

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFET 556
           W LF P    +L DL G  F   Y    RQA+ G +  + +R++ A  LW  +L  L ET
Sbjct: 314 WYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPARELWLAILASLMET 373

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQ 615
           GHPW+TFKD  N+RS  + +GV+HSSNLCTEI L +S +E AVCNLGS+NL  H     +
Sbjct: 374 GHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNLGSVNLARHCTPTGE 433

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+++LA+T+R A+R LDNVID N +  E+A ++N  +R +GLGLMGF   L    + YA
Sbjct: 434 LDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLMGFAELLARRAVSYA 493

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734
            P A ++AD+  EF+S+HAISAS  LA+ERGA+ +F  S W  GV PID++  LA  R  
Sbjct: 494 EPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVLPIDTLDELAADRGL 553

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++RT RL W+ L++RV+  GMRN   MA+APTATIA + G + S+DP Y N++ +  
Sbjct: 554 PVEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTTPSLDPYYANVFSRQT 612

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG F  VN  LV EL++R LW++ ++  L    G +  +   P DL     TA+++   
Sbjct: 613 LSGKFLEVNPILVEELRRRGLWEQ-LLPGLVAARGDLRAVPGCPPDLVARFPTAYQVPAE 671

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             IE A+R QKW+D   S NLY       ++  +Y  AW  GLK+TYY   R    +E+S
Sbjct: 672 SYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKSTYYCFVRPRMEIEQS 731

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T+     +     V        +    +SC  D  CE CQ
Sbjct: 732 TVAVNKARRRPQWVQLAEREVLA-SDAASCRLDGSCESCQ 770


>gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 801

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 334/829 (40%), Positives = 494/829 (59%), Gaps = 55/829 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DGTL   +  ++   V + C GL  V    V ++    +YDG S  +L+   I 
Sbjct: 9   MRVKKRDGTLEPVDVTKIVERVTKNCQGLTQVDPLRVATKAISGLYDGASTKELDNLCIQ 68

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI ++P Y+++ AR L   +  EV      + QK           + F   +  G 
Sbjct: 69  TASLLIGEDPEYSRLAARLLSTYIDEEV------RSQKI----------QSFADSVSFGY 112

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           +A LL E    F   +   L   ++  R   FEY GL+ +YDRY L    +R   E PQ 
Sbjct: 113 QAGLLAEHTYKFVETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQVFETPQY 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FFMRVA GLA    +  + A+EFY L+SS  +M STPTLFNSGT  PQ+SSC+L   P D
Sbjct: 173 FFMRVACGLA----QSVEEAIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYLLDSPSD 228

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I+    + A+L+K++GG+G  ++ VR  G+ I GTNG S G+IP+LK  + +  AV
Sbjct: 229 DLSAIYQKYTDIALLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMDSSVAAV 288

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+EEFL+LR NTGD+ +R H++N ANW+PDLFMKRV  +A 
Sbjct: 289 NQGGKRKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAM 348

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETG 557
           W+LF P  V    D YG+EFE AY   E      E K++ +++ A  L+ +M+  L +TG
Sbjct: 349 WSLFDPKVVPHFVDTYGEEFEKAYVEAE------EKKLYIKQLKARDLYSRMMKTLAQTG 402

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD  N+++ Q  +   V+H SNLCTEI   +S +ETAVCNLGS+NL  H  N Q
Sbjct: 403 NGWMTFKDHANLKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARHVENGQ 462

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F+++KLA ++RTAV+ LD V+DIN + I  A+ SNH  R +GLG+MG Q AL L+ +P+ 
Sbjct: 463 FNFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLMKLPFD 522

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A +++ +  E I ++A+  S EL+++ G + +F+ +   +G+   D  G+     + 
Sbjct: 523 SAAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTPSQPER 582

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     +++LK+++K  G+RNS  +AIAPTATIA+I G  ++I+P   NL+ +  +
Sbjct: 583 ----------FEKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETL 632

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  +N +LV++LK   +W E + +++K  DGSI ++  IP  +K+++ T +EI    
Sbjct: 633 SGEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKS 692

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L++ A+ R  +IDQAQSLNL+ + P+  KL  +Y  AW  G+KTTYYLRSR AT + K+T
Sbjct: 693 LVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATKIAKTT 752

Query: 916 LKGVDGKLN---------AVPVTDPNSS-THSLGIPSSCTSDTECEVCQ 954
           +K      N         A P  +   S + +  I  S  +   CE CQ
Sbjct: 753 VKASSNSANPTASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801


>gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           saanensis SP1PR4]
 gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           saanensis SP1PR4]
          Length = 815

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 334/782 (42%), Positives = 479/782 (61%), Gaps = 42/782 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + +   +G L   +  ++   V+    GL  V +  + S+T   +YDG +  +L++  
Sbjct: 29  PTMGVRKRNGALEPVDVNKIVRAVQRNAHGLGQVDAIRIASKTIGGLYDGATTRELDSIS 88

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++ +LI +EP Y+K+ AR LL  + +EV+        +  H   Q +   Y     +E
Sbjct: 89  IDTAASLIAEEPQYSKLAARLLLGTIMKEVVG-------QNLHSFSQSISYGY-----QE 136

Query: 263 GVKARLLHESMMDF--DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           GV ++   E +      L +  ND   +R   FEY GL+ +YDRY L    SR  IE PQ
Sbjct: 137 GVVSKATAEFVQTHMRKLNHAINDELSDR---FEYFGLRTVYDRYLLRDPISRKVIETPQ 193

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            FF+RVA GLA    E    A+EFYNL++S  +M S+PTLFNSGT+H Q+SSC+L   P 
Sbjct: 194 HFFLRVACGLAGTPHE----AIEFYNLIASHDYMPSSPTLFNSGTKHAQMSSCYLHDSPL 249

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I+   +  A+L+K+SGG+G  +  VR  G+ I  TNG S G++P+L+  + +  A
Sbjct: 250 DSLDSIYDTYKNVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSSVAA 309

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGA C YLE WH D+E FL+LR+NTGD  RRT+++N ANWIPDLFM+RV ++ 
Sbjct: 310 VNQGGKRKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRVDEDG 369

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P EV    DLYGKEFE AY   + + D+   K  R+I A  L+ +M+  L ETG
Sbjct: 370 IWSLFDPKEVPTFPDLYGKEFEEAY--IQAETDK---KYHRQIKARDLYMRMMRSLAETG 424

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NN 614
           + W+TFKD CNI++ Q  +   VVH SNLCTEIT  +S +ETAVCNLGS+NL  H     
Sbjct: 425 NGWMTFKDACNIKNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHVTPEG 484

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           +FD++KLA+T+R AV +LD VIDIN + + +A  +N   R +GLG+MG Q     + IP+
Sbjct: 485 KFDFEKLANTVRIAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQMRIPF 544

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPEA+ I+ +  E I ++A+ ASVELA+  G + SF  +   +G F  D   +     +
Sbjct: 545 DSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWNVKPADPE 604

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WD L++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  
Sbjct: 605 R----------WDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRET 654

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F  VN +L+ ELKQR +W E M   +K  +GS+  +E +P+DL+ ++ T +E+   
Sbjct: 655 LSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWEVPMR 714

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            LI+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  AW  GLKTTYYLRSR AT + K+
Sbjct: 715 SLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKTTYYLRSRPATKISKT 774

Query: 915 TL 916
           T+
Sbjct: 775 TV 776


>gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 803

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 339/826 (41%), Positives = 475/826 (57%), Gaps = 54/826 (6%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P A  + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  +L+
Sbjct: 21  PTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELD 80

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
              I ++  LI +EP Y ++ AR L   + +EV                Q +Y   F + 
Sbjct: 81  ELSIRTAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQS 124

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314
           +  G +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L    +R  I
Sbjct: 125 VGRGHEVGLINDRLLNFVQTNARKLNDAIDMSLDLNFDYFGLRTLYDRYLLRHPHTRKVI 184

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ FF+R+A  L    +E    A+  Y  + +  ++ S+PTLFNSGT H QLSSCFL 
Sbjct: 185 ETPQQFFLRIASAL----SEDVPEALALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLL 240

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             P D L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK  + 
Sbjct: 241 DSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDS 300

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANWIPDLFMKRV
Sbjct: 301 SVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFMKRV 360

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W+LF P  V +  DL+G+ FE AY   E Q      K  R ISA  L+ +M+  L
Sbjct: 361 EADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYSRMMRTL 415

Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S+EETAVCNLGSINL  HF
Sbjct: 416 AETGNGWMTFKDKCNRASNQTLRAGNVIHLSNLCTEILEVTSAEETAVCNLGSINLGNHF 475

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N +FD+DKLA T+R AVR LD VID+N + IE A++ N   R +GLG MG Q      
Sbjct: 476 DGNGEFDFDKLADTVRLAVRQLDRVIDLNFYPIESARRGNLRWRPVGLGCMGLQDVFFRK 535

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+   EA  ++ +  E I FHA+  SVELAQERG + SF  +    G    D+  ++ 
Sbjct: 536 RLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFADTRAASGELQFDAWNVVP 595

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E  +           WD L++R+K  G+RNS  +AIAPTATIA+I G  + ++P   NL+
Sbjct: 596 EDAER----------WDSLRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SGDF  VN +LVNELK+   W   M   +K  +GSI  I +IP+ L+ ++ TA+E
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQGITQIPETLRHVYRTAWE 705

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR AT 
Sbjct: 706 LPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATK 765

Query: 911 VEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + K+T+    G   A P  V  P  +     I  S  +   CE CQ
Sbjct: 766 IAKTTVSHAAG---AAPEKVFSPEEA-----IACSLENPEACEACQ 803


>gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 800

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 336/826 (40%), Positives = 480/826 (58%), Gaps = 57/826 (6%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P A  + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  +L+
Sbjct: 21  PTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELD 80

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
              I ++  LI +EP Y ++ AR L   + +EV                Q +Y   F + 
Sbjct: 81  ELSIRTAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQS 124

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314
           +  G +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L    +R  I
Sbjct: 125 VSRGHEVGLINDRLLNFVQTNARKLNDAIDGALDLNFDYFGLRTLYDRYLLRHPHTRKVI 184

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ FF+R+A  L    +E     +  Y  + +  ++ S+PTLFNSGT H QLSSCFL 
Sbjct: 185 ETPQQFFLRIASAL----SEDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLL 240

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             P D L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK  + 
Sbjct: 241 DSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDS 300

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANW+PDLFMKRV
Sbjct: 301 SVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRV 360

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W+LF P  V +  DL+G+ FE AY   E Q      K  R ISA  L+ +M+  L
Sbjct: 361 EADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYARMMRTL 415

Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S++ETAVCNLGSINL  HF
Sbjct: 416 AETGNGWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHF 475

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             +N+FD++KLA T+R AVR LD VID+N + IE A+++N   R +GLG MG Q      
Sbjct: 476 DEHNEFDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRK 535

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S EA  ++ +  E I FHA+  S ELAQERG + SF  +    G    D+  ++ 
Sbjct: 536 RLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVP 595

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E         T+R  WD L++R+K  G+RNS  +AIAPTATIA+I G  + ++P   NL+
Sbjct: 596 E--------DTAR--WDALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SGDF  VN +LVNELK+  LW   M   +K  +GSI  + +IP+ L++++ TA+E
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR AT 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATK 765

Query: 911 VEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + K+T+        A P  V  P+ +     I  S  +   CE CQ
Sbjct: 766 IAKTTVS------TAAPAKVFSPDEA-----IACSLENPEACEACQ 800


>gi|313903042|ref|ZP_07836437.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466766|gb|EFR62285.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
          Length = 930

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/728 (42%), Positives = 449/728 (61%), Gaps = 22/728 (3%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + ++P + +V  R  L +L R+VL      P++         Y   F 
Sbjct: 83  LEELLVQAATQNLHRDPEFERVAVRARLRQLYRQVLGEPVPGPER---------YRAAFP 133

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI  GV    L E ++ FDL  LA  L+ ERD +  ++GL  L DRY +    SR  +E
Sbjct: 134 AYIRRGVACGALDERLLAFDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLE 193

Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            PQ  FMRVAMGLAL E E  +R   A+ FY  +S+F ++ STPTLFN+GT H QLSSC+
Sbjct: 194 TPQYLFMRVAMGLALAE-EPARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCY 252

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D +  I  A  +   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   +
Sbjct: 253 LADVHDSMDHILEAAGDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYD 312

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++R
Sbjct: 313 ALIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRR 372

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKML 550
           V     W LF P  V +L + +G  F  AY    RQA+ GE+  + ++++ A  L+R++L
Sbjct: 373 VEAGEPWYLFDPAYVPELPERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREIL 432

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
             L ET HPW+ FKD  N+RS     GV+HSSNLCTEI L ++++E AVCNL S+NL  H
Sbjct: 433 ATLQETSHPWLVFKDAGNVRS--LLPGVIHSSNLCTEIFLPTTADEVAVCNLASVNLARH 490

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 D++ LA+T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L
Sbjct: 491 LGPAGIDWEALAATVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRL 550

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + YA PEA ++AD  +EFIS+HAI AS  LA ERG++ SF  S W +G  P+D++  L 
Sbjct: 551 GLGYADPEAADLADRVLEFISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLE 610

Query: 731 EVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           E R   + ++R++RL W+ ++ RV+  GMRN   +A+APTATI+ I G + S+DP Y N+
Sbjct: 611 EERGRPVTVDRSARLDWEGVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNV 669

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + +  +SG F  VN  LV EL+QR LW E +   +    G +  I  +P D++  + TA+
Sbjct: 670 FSRQTLSGKFLEVNRVLVEELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAY 728

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++ P   +E A+R QKW+D   S NL+L +     ++ +YR+AW  GLK+TYYL      
Sbjct: 729 QVPPEAYLEIAARAQKWVDMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRM 788

Query: 910 SVEKSTLK 917
             E ST++
Sbjct: 789 YAEPSTVR 796


>gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa]
          Length = 403

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 273/403 (67%), Positives = 332/403 (82%), Gaps = 1/403 (0%)

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG
Sbjct: 1   IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLF
Sbjct: 61  KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDL+G  FE AY+ YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T
Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  +   D+ KL 
Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ + I YAS  AVE 
Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD+SME I ++A  AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R   + ++R+
Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 360

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           SRL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P
Sbjct: 361 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403


>gi|190572322|ref|YP_001970167.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
 gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 775

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 333/821 (40%), Positives = 477/821 (58%), Gaps = 57/821 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  +L+   I 
Sbjct: 1   MSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELDELSIR 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y ++ AR L   + +EV                Q +Y   F + +  G 
Sbjct: 61  TAALLIGEEPEYGRLAARLLANYIAKEV--------------SGQEIYA--FSQSVSRGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L    +R  IE PQ 
Sbjct: 105 EVGLINDRLLNFVQTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQ 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FF+R+A  L    +E     +  Y  + +  ++ S+PTLFNSGT H QLSSCFL   P D
Sbjct: 165 FFLRIASAL----SEDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQD 220

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 221 SLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAV 280

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RR H++N ANW+PDLFMKRV  +  
Sbjct: 281 NQGGKRKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQE 340

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V +  DL+G+ FE AY   E Q      K  R ISA  L+ +M+  L ETG+
Sbjct: 341 WSLFDPRVVPEFTDLFGEAFEAAYLQAEAQG-----KANRTISARKLYARMMRTLAETGN 395

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQ 615
            W+TFKD CN  S Q  +   V+H SNLCTEI   +S++ETAVCNLGSINL  HF  +N+
Sbjct: 396 GWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE 455

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD++KLA T+R AVR LD VID+N + IE A+++N   R +GLG MG Q       +P+ 
Sbjct: 456 FDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFD 515

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  ++ +  E I FHA+  S ELAQERG + SF  +    G    D+  ++ E    
Sbjct: 516 SAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE---- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+R  WD L+ R+K  G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  +
Sbjct: 572 ----DTAR--WDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETL 625

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  VN +LVNELK+  LW   M   +K  +GSI  + +IP+ L++++ TA+E+    
Sbjct: 626 SGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRS 685

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR AT + K+T
Sbjct: 686 LIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 745

Query: 916 LKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +        A P  V  P+ +     I  S  +   CE CQ
Sbjct: 746 VSA------AAPAKVFSPDEA-----IACSLENPEACEACQ 775


>gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 797

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 331/827 (40%), Positives = 468/827 (56%), Gaps = 62/827 (7%)

Query: 140 PIAPKL-KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           P +P L ++    G L   N  ++   V+    GL  V    V  +T   +YDG + ++L
Sbjct: 21  PDSPSLMQVRKRSGALEDVNVNKIVRAVQRCSGGLPGVDPMRVAVKTIGGLYDGATTAEL 80

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +   I ++  LI +EP Y+++ AR L   + +EV         +  H          F +
Sbjct: 81  DRLSIQTAAGLISEEPEYSRLAARLLATYVDKEVA-------NQDVHS---------FSQ 124

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA------FEYLGLQILYDRYFLHINGS 312
            I  G +  L+    M F     AN  K     A      FEY GL+ +YDRY L    +
Sbjct: 125 SIAAGYRHGLVAGGTMAF---VAANARKLNAAAAEPAPDLFEYFGLRTVYDRYLLRHPDT 181

Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           R  IE P  FF+RVA GLA    E    A+E Y L+S+  ++ STPTLFNSGT  PQ+SS
Sbjct: 182 RHVIETPAFFFLRVACGLA----ESAADAIELYRLMSAHRYLPSTPTLFNSGTARPQMSS 237

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           C+L   P D L  I+    + A L+K++GG+G  +  +R  G+ I GTNG S G++P+LK
Sbjct: 238 CYLLDSPADALEAIYDRYADVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLK 297

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             + +  AVNQGGKRKGA C YLETWH DVEEFL+LR NTGD  RRT+++N ANW+PDLF
Sbjct: 298 TLDSSVAAVNQGGKRKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLF 357

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV     W+LF P  V  L DL+G  F+ AY + E +         + + A  L+ +M
Sbjct: 358 MRRVEAGEPWSLFDPKAVPHLTDLFGAAFDAAYTDAEAKG-----LAVKSVPARDLYARM 412

Query: 550 LTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +  L ETG+ W+TFKD CN    Q  +   VVHSSNLCTEI   +S+ ETAVCNLGS+NL
Sbjct: 413 MKTLAETGNGWMTFKDACNRACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNL 472

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
             H   + FD+  LA T+RTAVR LD V+D+N +   +A  SN   R +GLG+MG Q   
Sbjct: 473 ARHVTRDGFDFAALAETVRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVF 532

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L +P+ +P A E++    E I +HA++ S ELA  RG + SF  +    GV   D  G
Sbjct: 533 FKLKLPFDAPAARELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWG 592

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +            T    W  L++RV+T G+RNS  +AIAPTATIA+I G  + ++P   
Sbjct: 593 V----------EPTDPARWAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVS 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NL+ +  +SG+F  VN +LV++LK   LW +A+ + +K  DGS+ ++  +P  L+ ++ T
Sbjct: 643 NLFKRETLSGEFLQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRT 702

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+E+    LI+ A+ R  +IDQ+QSLNL+L+ P+  K+  +Y  AW  GLKTTYYLRSR 
Sbjct: 703 AWEVPQRGLIDMAAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRP 762

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           AT++ K+T+          P   P  ++    +  S  +   CE CQ
Sbjct: 763 ATAIAKTTV---------TPTAAPADTS---AVSCSLENPGACEACQ 797


>gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thermaerobacter marianensis DSM 12885]
 gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter marianensis DSM 12885]
          Length = 855

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/727 (42%), Positives = 443/727 (60%), Gaps = 20/727 (2%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + +EP   +V  R  L +L R VL      P           Y   F 
Sbjct: 74  LEELLVQAATQHLHREPRMERVAVRARLRQLYRCVLNDEAPSP---------AAYRAAFP 124

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI +GV    L E ++ FDL  LA  L+ ERD    ++GL  L DRY +    SR  +E
Sbjct: 125 AYIRKGVACGALDERLLAFDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLE 184

Query: 316 MPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  FMRVAMGLAL E    + A    FY+ +S+F ++ STPTLFN+GT H QLSSC+L
Sbjct: 185 TPQFLFMRVAMGLALAEEPGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYL 244

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  A ++   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   + 
Sbjct: 245 ADVHDSMDHILDAARDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDA 304

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++RV
Sbjct: 305 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 364

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551
                W LF P  V +L +  G++F  AY    RQA+ G +  + ++++ A  L+R++L 
Sbjct: 365 EAGEPWYLFDPAYVPELPEKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILA 424

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L ET HPW+ FKD  N+RS     GV+HSSNLCTE+ L ++++E AVCNL S+NL  H 
Sbjct: 425 TLQETSHPWLVFKDAGNLRS--LLPGVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHL 482

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D+D LA T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L 
Sbjct: 483 GPQGIDWDALAETVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 542

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-LLA 730
             YA PEA ++ D  +EFIS+HAI AS  LA+ERG++ +F  S W QG  PID++  L A
Sbjct: 543 WGYADPEAADLVDRVLEFISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEA 602

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E  + + ++RT+RL W+ ++ +V+  GMRN   MAIAPTATI+ I G + S+DP Y N++
Sbjct: 603 ERGEPVTVDRTARLDWESVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVF 661

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG F  +N  LV EL++R LW EA+   +    G +  I  +P D++  + TA++
Sbjct: 662 SRQTLSGKFLEINRVLVEELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQ 720

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + P   +E A+R QKW+D   S NL+L +     ++ +Y +AW  GLK+TYYL       
Sbjct: 721 VPPEAYLEVAARAQKWVDMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMY 780

Query: 911 VEKSTLK 917
            E ST++
Sbjct: 781 AEPSTVR 787


>gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 789

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/713 (43%), Positives = 427/713 (59%), Gaps = 16/713 (2%)

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  EP  +++  R LL    RE L T    P           Y + F RY++  ++   L
Sbjct: 51  IHLEPAASQIAVRVLLRHNYREALGTPTPSP---------AAYRQGFIRYVQNAIREGYL 101

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327
              + D DL  LA  L+ ERD    Y GL  L DRY +   ++G  +E PQ  FMRVAMG
Sbjct: 102 DPRLGDLDLEALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMG 161

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E E       FY  +S    + STPTLFN+GT HPQLSSC+L  + D L  I   L
Sbjct: 162 LALAEAEPLAWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGL 221

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q    LAKY+GG+G   T +R  GA + G +G S GVIPFL V +    AVNQGG+R+G 
Sbjct: 222 QTFGKLAKYAGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGT 281

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           + AYLE WH++VE FLDLRKNTGD   R   +NTA ++PD FM+RV +   W LF P   
Sbjct: 282 MAAYLEPWHLEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVA 341

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            DL + +G+ F+ AY  Y + A+ G++  + ++K+ A  L+R++L +L ET HPW+ FKD
Sbjct: 342 PDLAETWGRAFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKD 401

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N RS    VG+VHSSNLCTEI L +S EE AVCNL S+NL A+    +  +  LA + 
Sbjct: 402 AGNARSALAAVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSA 461

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVID N +   +A++SN  +R +GLG+MGF      L + Y  PEA  + D 
Sbjct: 462 HLAMRMLDNVIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDR 521

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744
             E++S+HAI AS  LA+ERGA+  F  + W QG  P+D++  L  +R   + ++R +RL
Sbjct: 522 ITEYVSYHAIQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAPVEVSREARL 581

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+  V+  GMRNS  MAIAPTA+I+ I G + S+DP Y N++ ++N+SG F  VN 
Sbjct: 582 DWDALRPLVQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNP 640

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            LV  LK+  LW+E     ++   G +  IE IP+ L++   TA++I P   IE A+R Q
Sbjct: 641 VLVEALKRAGLWEEVRERIVE-ERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQ 699

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           KW+D   S NLYL E S + ++ +Y +AW  GLK+TYYL        E+ST++
Sbjct: 700 KWVDMGVSRNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQSTVR 752


>gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
 gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
          Length = 781

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 327/823 (39%), Positives = 476/823 (57%), Gaps = 55/823 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     +  ++   VE     L DV    V ++T   +YDG + ++L+   I 
Sbjct: 1   MRVRKRNGDTEPVDVNKIVRAVERWADDLTDVDPLRVATKTISGLYDGATTAELDRLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+K+ AR L   + +EV            H++    + +       EG+
Sbjct: 61  TAAELIAEEPQYSKLAARLLAAYIEKEV------------HNQGIASFSQSIALGHAEGL 108

Query: 265 ----KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
                AR + ++   FD       +  + D  FEY GL+ +YDRY L    SR  IE PQ
Sbjct: 109 IGDETARFVKDNARKFDFA-----IDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQ 163

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            F +RVA GLA    E    A+EFY L+S   ++ S+ TLFNSGTRHPQ+SSC+L   P 
Sbjct: 164 YFLLRVACGLARTPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPR 219

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I+    + A L+K++GG+G  ++ VR  GA I GTNG S G++PFLK  + +  A
Sbjct: 220 DELDSIYARYHQVARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAA 279

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRT+++N ANWIPD FM+RV  + 
Sbjct: 280 VNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADE 339

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PD+  +L DL+G +F+ AY   E      E +  R++ A  L+ KM+  L ETG
Sbjct: 340 LWSLIDPDQAPELVDLWGADFDAAYRRAE-----AEGRYVRQVRARDLYAKMMRTLAETG 394

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD CN +  Q  +   VVH SNLCTEI   +  +E AVCNLGSINL  H  +  
Sbjct: 395 NGWMTFKDACNAKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGA 454

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+L  T++ AV +LD V+DIN +   +A +SN   R IGLG+MG Q     L +P+ 
Sbjct: 455 VDWDRLRRTVQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFD 514

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA+E++    E I   A+  S ELA E G + +F  +    G    D  G+    ++ 
Sbjct: 515 SGEALELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTPTQQER 574

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A           +K+R+  +G+RNS  +AIAPTATIA+I G  +SI+P   NL+ +  +
Sbjct: 575 YAA----------IKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETL 624

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  VN+ LVNELK R LW + +   +K  DGS+  +  +P++++++  TA+E+    
Sbjct: 625 SGEFLQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKA 684

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+QSLNL++  P+  KL  +YR AW  GLKTTYYLRSR AT ++++T
Sbjct: 685 LIDLAAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQAT 744

Query: 916 LKGVDG----KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +          + A P T   +++ SL  P +      CEVCQ
Sbjct: 745 VTVTSSDDVRDVMANPSTSKPATSCSLENPET------CEVCQ 781


>gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 834

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 311/778 (39%), Positives = 468/778 (60%), Gaps = 13/778 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           + ++  DGT   +++ R+ + +E+A  GL +    +  + SE    ++DG++   L+ A+
Sbjct: 3   ITVVKRDGTREPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEAV 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  +   ++ +P +  V AR LL+ + + VL   Y  P+     E++ L+ E+F R I+ 
Sbjct: 63  IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGD-YSSPE-----ELKRLHAEHFARNIQR 116

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ F
Sbjct: 117 GVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD+
Sbjct: 177 WMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDI 236

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV++
Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 296

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W 
Sbjct: 297 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDWF 356

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I A   ++ +L  L  T HPW
Sbjct: 357 LFDPLEVSDLNELYGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHPW 416

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           +T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ K
Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAK 476

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+ 
Sbjct: 477 IEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEESY 536

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
           ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +N
Sbjct: 537 DLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKVN 596

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           RT+RL WD L+ +VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG F
Sbjct: 597 RTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKF 655

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E 
Sbjct: 656 LEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEV 714

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K
Sbjct: 715 AARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK 772


>gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 834

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 310/778 (39%), Positives = 469/778 (60%), Gaps = 13/778 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           + ++  DG+   +++ R+ + +E+A  GL +    +  + SE    ++DG++   L+ A+
Sbjct: 3   ITVVKRDGSKEPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEAV 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  +   ++ +P +  V AR LL+ + + VL   Y  P+     E++ L+ E+F R I+ 
Sbjct: 63  IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGD-YSSPE-----ELKRLHAEHFARNIQR 116

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ F
Sbjct: 117 GVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD+
Sbjct: 177 WMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDI 236

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV++
Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 296

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W 
Sbjct: 297 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWY 356

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I+A   ++ +L  L  T HPW
Sbjct: 357 LFDPLEVSDLNELYGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHPW 416

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           +T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ K
Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFAK 476

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+ 
Sbjct: 477 IEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEESY 536

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
           ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +N
Sbjct: 537 DLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKVN 596

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           RT+RL WD L+ +VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG F
Sbjct: 597 RTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKF 655

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E 
Sbjct: 656 LEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLEV 714

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K
Sbjct: 715 AARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK 772


>gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 838

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 324/799 (40%), Positives = 472/799 (59%), Gaps = 48/799 (6%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           S    + P    +++   +G+    +  ++   V  +C+ L DV +  V ++T   +YDG
Sbjct: 31  SAGAEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDALRVATKTISGLYDG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
            +  +L+   I ++ +LI  EP YAK+ AR L   + +EV            + E+    
Sbjct: 91  ATTRELDQLSIQTAASLIADEPQYAKLAARLLATYIDKEV-----------RNQEIHA-- 137

Query: 253 PEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
              F + +  G +  L+++ +  F   +   L + ++  RD   EY GL+ LYDRY L  
Sbjct: 138 ---FSQSVAVGRRLGLINDRLHGFVAQNARKLNDAIEPARDHELEYFGLRTLYDRYLLKH 194

Query: 310 NGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
             +R  IE PQ FF+R+A  L    +E   +AVE Y L SS  ++ S+PT+FNSGT H Q
Sbjct: 195 PETRLVIETPQQFFLRIACAL----SETAAQAVELYRLFSSLDYLPSSPTMFNSGTSHEQ 250

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL   PDD L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P
Sbjct: 251 LSSCFLLDSPDDHLETIYQRYTDVAMLSKFSGGIGLAYHRVRSRGSLIRATNGHSSGIVP 310

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +LK  + +  AVNQGGKRKGA C YLE WH DVEEFL LR NTGD+  RTH++N A+W+P
Sbjct: 311 WLKTLDASVAAVNQGGKRKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVP 370

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  +  W+LF P +  DL DLYG+EFE  Y   ER    G  K  + + A  L+
Sbjct: 371 DLFMKRVEADGDWSLFDPKDARDLPDLYGEEFERRYVEAERA---GLAK--KTMKARELY 425

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGS 604
            +M+  L +TG+ W+TFKD  N    Q  +   +VH SNLCTEI   +S+EE+AVCNLGS
Sbjct: 426 ARMMRTLAQTGNGWMTFKDKSNRACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNLGS 485

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           INL  H A        FD++KLA T+RTAVR LD VID+N + I   ++SN   R +GLG
Sbjct: 486 INLARHTATLADGAVAFDFEKLARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLG 545

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           LMG Q     + +P+ +P A E++    E + +HA+S S +LA E+G + +F  +   +G
Sbjct: 546 LMGLQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAARG 605

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               D+ G + E              W+ L+ RV+  G+RNS  +AIAPTATIA+I G  
Sbjct: 606 ELQFDAWGAVPE----------DAARWEALRARVQAEGLRNSLLVAIAPTATIASIAGCY 655

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           + I+P   NL+ +  +SGDF  +N +LV ELK+   W++A+ + LK  +GS+  ++ +P+
Sbjct: 656 ECIEPQVSNLFKRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPE 715

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
            ++ +  TA+EI    LI+ A+ R  +IDQ+QSLNL+++ P+  +L  +Y  AW  GLKT
Sbjct: 716 QIRAVFRTAWEIPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKT 775

Query: 900 TYYLRSRSATSVEKSTLKG 918
           TYYLRSR AT + K+T++ 
Sbjct: 776 TYYLRSRPATRIAKATVEA 794


>gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 896

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/784 (40%), Positives = 462/784 (58%), Gaps = 14/784 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           + ++  +G    +++ ++ + +E A +GL +  + +  + SE    ++DG++   L+ A+
Sbjct: 62  ITVVKRNGEREPYDANKINLAIEHAAAGLDENITWVTQIASELELTLFDGITTQQLDEAV 121

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  +   ++ +P +  V AR LL+ + + VL   Y       + E+  L+  +F  YIE 
Sbjct: 122 IQVALQNVKDDPAFDIVAARLLLKIIYKRVLGD-YASGTDGDNAELVELHARHFRGYIER 180

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
           GV   LL       FDL  LA  L   RD   +Y+G+  L +RY +   NG  +E+PQ F
Sbjct: 181 GVSETLLDSRFTGLFDLDRLAGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYF 240

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MR+AMGL+L ET+    A+ FY+ +S   ++ +  TL N+GT +PQLS+CF+  + DD+
Sbjct: 241 WMRIAMGLSLNETDPTSHAIAFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDI 300

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++++   L K +GG+G   T +R  G+ I   N  S G IPF+   +    AV++
Sbjct: 301 EHIAKSVRDVMWLTKGTGGIGLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSR 360

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA W  D FMKRV  +  W 
Sbjct: 361 GGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWY 420

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV+DL++LYGK F   Y  Y   A+ GE+++F+KISA A ++ +L  L  T HPW
Sbjct: 421 LFDPLEVADLNELYGKAFSERYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPW 480

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614
           +T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  H  +       
Sbjct: 481 LTWKDTINNRALNNNTGAIHLSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGL 540

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           + D+ +L  + R AVR LDN+IDI   ++ +A  SN  +RAIGLG+MGF   +  L   Y
Sbjct: 541 EMDWARLEESARQAVRQLDNLIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSY 600

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  + DE ME +S+ AI  S +LAQERGAY +F+GS W QG+ P DSI L    R 
Sbjct: 601 ESEEAYALIDEIMEHVSYAAIDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRG 660

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++RT RL WD L+++VK  GMRN+  MAIAPTA+I  + G +   DP +  ++ +S
Sbjct: 661 IPITVDRTIRLDWDRLREKVKG-GMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRS 719

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             SG F  VN  LV  L++R LW+E   S L+   G I  I  IPD++K    T+F++ P
Sbjct: 720 TSSGKFLEVNRNLVEALQERGLWEETRESILRSQ-GDIQGIAAIPDEIKAAFKTSFQLSP 778

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
              IE A+R QKWIDQA S N+YL+      +  IY  AW  G+KTTYYL  +     E+
Sbjct: 779 HAFIEVAARAQKWIDQAISRNMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQ 838

Query: 914 STLK 917
           ST+K
Sbjct: 839 STVK 842


>gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei str. Twist]
 gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei TW08/27]
 gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma
           whipplei TW08/27]
 gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str.
           Twist]
          Length = 792

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/776 (39%), Positives = 470/776 (60%), Gaps = 11/776 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  DG    ++S+++   +EEA SG  D  ++ + SE    ++DG++ S L+ +LI 
Sbjct: 3   LTVVKRDGRKQQYDSRKVCAAIEEALSGSSDAITEQLSSELELTLFDGITTSQLDESLIQ 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +   ++ +P Y +V  R LL+ + R VL   YK        +++ L+ ++F  +IE+GV
Sbjct: 63  VALQNVKDDPVYDRVATRLLLKSIYRSVLGE-YKNC-----CQLRDLHVKHFRGFIEKGV 116

Query: 265 KARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
           +  +L   +   FD   L+  L  +RD  F+Y+GL  L +RY +   +G  +E+PQ  +M
Sbjct: 117 EEGILDRRLDGRFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLWM 176

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           R++MGL++ E +    A++FY  +S   ++ +  TL N+GT  PQLS+CF+  + DD+  
Sbjct: 177 RISMGLSVLEKDPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIEH 236

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I    ++  +L K +GG+G   T +R  G+ I   N +S G IPF+   +    AV++GG
Sbjct: 237 IAKTTRDVMLLTKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRGG 296

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           K+ GA+C Y+E WH+D  EF+DLR+N+GD  RRT   NTA WI D FMKRV  +  W LF
Sbjct: 297 KKFGALCFYMENWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYLF 356

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL++LYG EF   YE Y  QA+ G + +F+K+ A   +R +L  L  T HPWIT
Sbjct: 357 DPLETPDLNELYGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWIT 416

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKD  N+R+   + G +H SNLCTEI L    E  +VCNL SINL  H  + + D+  L 
Sbjct: 417 FKDTINLRALNNNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLLE 476

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            + R AVR LDN+IDI C +++++  SN+ +RAIGLG+MGF + +  L   Y S +A ++
Sbjct: 477 ESTRLAVRQLDNLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFDL 536

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
            D  ME ISF AI  S  LA+ERG Y +F GS W +G+ PIDSI ++++ R   +++N +
Sbjct: 537 IDRLMEQISFVAIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVPVSVNTS 596

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            RL WD L+KRV+  G+RN+  +AIAPTA+I  + G +  +DP +  ++ +S   G F  
Sbjct: 597 YRLDWDSLRKRVRN-GIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFLE 655

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  LV +LK+R LW E +  D+    G+I  I+ IP ++K  + T+F++ P   ++ A+
Sbjct: 656 VNENLVLDLKRRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVAA 714

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           R QKW+DQA S N+YL+      +  +Y  AW MGLKTTYYL  +     E+ST+K
Sbjct: 715 RAQKWVDQAISRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVK 770


>gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL060PA1]
          Length = 856

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  ++I   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRIRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA2]
 gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA1]
 gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA2]
 gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA2]
 gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA2]
 gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA1]
 gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA3]
 gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA2]
 gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha
           [Propionibacterium acnes 266]
          Length = 856

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL074PA1]
 gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA1]
 gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL056PA1]
 gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL045PA1]
 gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA1]
 gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL038PA1]
 gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA2]
 gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA1]
 gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL099PA1]
          Length = 856

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium acnes KPA171202]
 gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA2]
 gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA3]
 gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA4]
 gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA1]
 gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL103PA1]
          Length = 856

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 841

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 319/786 (40%), Positives = 475/786 (60%), Gaps = 43/786 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G+    +  ++   V   C+GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 43  MRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSIQ 102

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP YA+++AR L   +++EV           ++ E+       F + +  G 
Sbjct: 103 TAAALIVEEPEYARLSARLLDTFIQKEV-----------SNQEIHS-----FSQSVAAGH 146

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L    +R  IE PQ 
Sbjct: 147 KHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQD 206

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L    T+  K A+E Y L SS  ++ S+PTLFN+GTRH QLSSCFL   P D
Sbjct: 207 FFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSD 262

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 263 ELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAV 322

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV  +  
Sbjct: 323 NQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQE 382

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V  L DLYG+ FE AY   E Q         RK+ A  L+ +M+  L +TG+
Sbjct: 383 WSLFDPKTVPHLTDLYGEAFERAYAAAEAQG-----LAARKVKARDLYARMMKTLAQTGN 437

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNLGS+NL    ++ +F
Sbjct: 438 GWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKF 497

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG Q     L +P+ +
Sbjct: 498 DFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDA 557

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  ++ +  E I F A++ S +LA++ G + +F  +    G    D+ G++ E     
Sbjct: 558 PEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE----- 612

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T+R  W  L++R++  G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 613 ---DTAR--WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLS 667

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK I+ TA+E+    L
Sbjct: 668 GDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSL 727

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY+RSR AT + K+T+
Sbjct: 728 IDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTV 787

Query: 917 KGVDGK 922
               G+
Sbjct: 788 DTSHGQ 793


>gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL001PA1]
          Length = 856

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +      +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNARDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA1]
 gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA1]
 gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA4]
 gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA3]
 gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA3]
 gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL092PA1]
 gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA2]
          Length = 856

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL ++ G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL020PA1]
          Length = 856

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S++L AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 800

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 319/786 (40%), Positives = 475/786 (60%), Gaps = 43/786 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G+    +  ++   V   C+GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 2   MRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSIQ 61

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP YA+++AR L   +++EV           ++ E+       F + +  G 
Sbjct: 62  TAAALIVEEPEYARLSARLLDTFIQKEV-----------SNQEIHS-----FSQSVAAGH 105

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L    +R  IE PQ 
Sbjct: 106 KHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQD 165

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L    T+  K A+E Y L SS  ++ S+PTLFN+GTRH QLSSCFL   P D
Sbjct: 166 FFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSD 221

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 222 ELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAV 281

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV  +  
Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQE 341

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V  L DLYG+ FE AY   E Q         RK+ A  L+ +M+  L +TG+
Sbjct: 342 WSLFDPKTVPHLTDLYGEAFERAYAAAEAQG-----LAARKVKARDLYARMMKTLAQTGN 396

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNLGS+NL    ++ +F
Sbjct: 397 GWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKF 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG Q     L +P+ +
Sbjct: 457 DFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDA 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  ++ +  E I F A++ S +LA++ G + +F  +    G    D+ G++ E     
Sbjct: 517 PEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE----- 571

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T+R  W  L++R++  G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 572 ---DTAR--WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLS 626

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK I+ TA+E+    L
Sbjct: 627 GDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSL 686

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY+RSR AT + K+T+
Sbjct: 687 IDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTV 746

Query: 917 KGVDGK 922
               G+
Sbjct: 747 DTSHGQ 752


>gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA3]
          Length = 856

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RR    +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA1]
          Length = 856

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/786 (39%), Positives = 463/786 (58%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL  H A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL097PA1]
          Length = 856

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/786 (39%), Positives = 464/786 (59%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYFP 123

Query: 258 RYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
           R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +E
Sbjct: 124 RTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A   
Sbjct: 424 TSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGPR 483

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++PM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LNPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
 gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
          Length = 813

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/779 (39%), Positives = 468/779 (60%), Gaps = 14/779 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           + ++  +GT   +++ ++ + +E+A +GL D  + +  + SE    ++DG++   L+ A+
Sbjct: 3   ITVVKRNGTREPYDANKINLAIEDAATGLDDNITWVTQIASELELTLFDGITTQQLDEAV 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  +   ++ +P +  V AR LL+ + + VL             +++ L+ E+F   +  
Sbjct: 63  IQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYTDAA------DLKKLHKEHFGPNVIR 116

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           GV+  LL   + + FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ F
Sbjct: 117 GVEEGLLDPRLTEMFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQYF 176

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MR+AMGL+L E    + A++FY  +SS  ++ +  TL N+GT +PQL++CF+  + DD+
Sbjct: 177 WMRIAMGLSLNEANPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDDM 236

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    ++   L K +GG+G   T +R  G+ I   N  S G IPF+   +    AV++
Sbjct: 237 EHIAKTTRDVMWLTKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVSR 296

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGK+ GA+C Y+E WH+D  EFL+LR N+GD  RRT   NTA WI D FMKRV  +  W 
Sbjct: 297 GGKKFGALCFYMENWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSWY 356

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV+DL++LYGK F   Y  Y   AD GE+ +F+KI A   ++ +L  L  + HPW
Sbjct: 357 LFDPLEVTDLNELYGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHPW 416

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           +T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  H       D+ 
Sbjct: 417 LTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDFA 476

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S EA
Sbjct: 477 KIEESARLAVRQLDNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEEA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            ++ DE ME +S+ AI AS ELA+ERGAY++F+GS W +G+ P+DSI L  E R  E+ +
Sbjct: 537 YDLIDEIMEHVSYAAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGMEIKV 596

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           NR +RL WD ++++VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  +G 
Sbjct: 597 NRKTRLDWDAMREKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNGK 655

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN  LV  L+Q  LW++   + L+   G I N+E IPDD+K +  T+F++ P   +E
Sbjct: 656 FLEVNRNLVETLQQHGLWEKNREAILRSQ-GDIQNVEGIPDDIKAVFKTSFQLSPYAFLE 714

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            A+R QKWIDQA S N+YL+      +  IY  AW  G+KTTYYL  +     E+ST+K
Sbjct: 715 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVK 773


>gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
           xanthus DK 1622]
 gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
           xanthus DK 1622]
          Length = 785

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 321/819 (39%), Positives = 479/819 (58%), Gaps = 43/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G   + +  ++   V  +C GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 1   MRVRKRNGGTETVDLNKIVRAVGRSCVGLPRVDAMRVATKTISGLYDGATTRELDSLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y +++AR L   +++EV           ++ ++       F + +  G 
Sbjct: 61  TAAALIVEEPEYGRLSARLLATFIQKEV-----------SNQDIHS-----FSQSVAAGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L    +R  +E PQ 
Sbjct: 105 KHGLIADRLLQFVQANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQE 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L+    +    A+E Y L SS  ++ S+PTLFNSGTRH QLSSCFL   P D
Sbjct: 165 FFLRVASALS---GDNVNEAIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPAD 221

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 222 ELDAIYKKYSDIAMLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAV 281

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR+NTGDD RRTH++N ANW+PDLFMKRV  +  
Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGD 341

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V    DLYG  FE AY   E      +    RK+ A  L+ +M+  L +TG+
Sbjct: 342 WSLFDPKSVPHFTDLYGDAFEQAYAKAE-----ADGLAMRKVKARDLYARMMKSLAQTGN 396

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +S  ETAVCNLGS+NL     + +F
Sbjct: 397 GWMTFKDISNRKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKF 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +  + A+R LD VID+N + I  A  SN   R +GLGLMG Q     L + + S
Sbjct: 457 DFERLRANAQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDS 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  ++ +  E I F A++ S ELA++ GA+ SF  +   +G    D  G++ E     
Sbjct: 517 AEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPE----- 571

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T+R  WD L++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 572 ---DTAR--WDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLS 626

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV +L+   LW+E + + +K  +GS+ +I  +P++L+ ++ TA+E+    L
Sbjct: 627 GDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSL 686

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++  + R  +IDQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + K+T+
Sbjct: 687 LDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATV 746

Query: 917 -KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G    +          +T +  +  S  +   CE CQ
Sbjct: 747 GAGGGASVAQAAPAPVAKATEAEAVACSLENPEACEACQ 785


>gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora
           maris AB-18-032]
 gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora
           maris AB-18-032]
          Length = 791

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 322/815 (39%), Positives = 465/815 (57%), Gaps = 45/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     +  ++   VE   + L ++    V ++T   +YDG + ++L+   I 
Sbjct: 17  MQVRKRNGDTEPVDVNKIVKAVERWVTDLDEIDPLRVATKTISGLYDGATTAELDKLSIQ 76

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+++ AR L   + +EV      + Q+         Y  +    I +  
Sbjct: 77  TAAELIGEEPQYSRLAARLLAAFVDKEV------RGQQVASFSQSIRY-AHGLGLIGDAT 129

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322
            A +   +    D V  A DL+      FEY GL+ + DRY L    +R  +E PQ + +
Sbjct: 130 AAFVARNARKLDDAVDPAGDLR------FEYFGLRTVADRYLLRHPQTRQVVETPQYWLL 183

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA GL+    E    A+ FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+L 
Sbjct: 184 RVACGLSQTPGE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELD 239

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+    + A L+K+SGG+G  WT VRG GA I GTNG+S G++PFLK  +    AVNQG
Sbjct: 240 SIYERYHQVAKLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQG 299

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWIPD FM+RV  +  W+L
Sbjct: 300 GRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSL 359

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P +  +L DLYG+ F+ AY   E+       K  R + A  L+ +M+  L +TG+ W+
Sbjct: 360 IDPSDAPELPDLYGEAFDEAYRAAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWM 412

Query: 562 TFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           TFKD  N  S Q       +H SNLCTEI   ++  ETAVCNLGSINL AH   +  D++
Sbjct: 413 TFKDAANRLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINLAAHLTADGIDWE 472

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL +T+RTAV  LD VIDIN +  ++A  SN   R +GLGLMG Q A   L +P+ S  A
Sbjct: 473 KLRATVRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRMPFDSTPA 532

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E++    E I   A+  S +LAQ+ G + ++  +   +G    D  G           +
Sbjct: 533 RELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLWG----------AD 582

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  L++ +   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  MSG+F
Sbjct: 583 LTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEF 642

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             +N++LV ELK R LW  ++   +K  +GS+  I  +P+D++++  TA+E+    LI+ 
Sbjct: 643 LQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRTAWELPQRALIDL 702

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ R  +IDQ+QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+   
Sbjct: 703 AAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVT 762

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 V V D  +   SL  P S      CE CQ
Sbjct: 763 PAAPAIVAVGDDEALACSLENPES------CEACQ 791


>gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           aurantiaca ATCC 27029]
          Length = 798

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 329/819 (40%), Positives = 466/819 (56%), Gaps = 47/819 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L+   
Sbjct: 20  PAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLS 79

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++  LI +EP Y+K+ AR L   + +EV      + Q          Y        +E
Sbjct: 80  IQTAAELIGEEPQYSKLAARLLAAYVDKEV------RGQGVASFSQSIAYAHGLGLIGDE 133

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320
                  H   +D D V    DL+      FEY GL+ + DRY L    SR  +E PQ +
Sbjct: 134 TAGFVARHARKLD-DAVDPDGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYW 186

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            +RVA GL+    E    AV FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+
Sbjct: 187 LLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDE 242

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +    AVN
Sbjct: 243 LDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVN 302

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV  +  W
Sbjct: 303 QGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGEW 362

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  L +TG+ 
Sbjct: 363 SLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNG 415

Query: 560 WITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           W+TFKD  N  S Q  +   V+H SNLCTEI   +   ETAVCNLGS+NL AH   +  D
Sbjct: 416 WMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVD 475

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P+ S 
Sbjct: 476 WERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSA 535

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G      +   
Sbjct: 536 QAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGA-----EPAQ 590

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             R     W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  MSG
Sbjct: 591 AGR-----WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSG 645

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E+    LI
Sbjct: 646 EFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALI 705

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+ 
Sbjct: 706 DLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVA 765

Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            V   ++ V   V+D  +   SL  P S      CE CQ
Sbjct: 766 PVLAPVSGVVSAVSDDEALACSLENPES------CEACQ 798


>gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
 gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
          Length = 798

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 327/819 (39%), Positives = 466/819 (56%), Gaps = 47/819 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L+   
Sbjct: 20  PAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLS 79

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++  LI +EP Y+K+ AR L   + +EV      + Q          Y        +E
Sbjct: 80  IQTAAELIGEEPQYSKLAARLLAAYVDKEV------RGQGVASFSQSIAYAHGLGLIGDE 133

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320
                  H   +D D V    DL+      FEY GL+ + DRY L    SR  +E PQ +
Sbjct: 134 TAAFVARHARKLD-DAVDPDGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYW 186

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            +RVA GL+    E    AV FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+
Sbjct: 187 LLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDE 242

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +    AVN
Sbjct: 243 LDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVN 302

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANW+PD FM+RV  +  W
Sbjct: 303 QGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGEW 362

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  L +TG+ 
Sbjct: 363 SLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGNG 415

Query: 560 WITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           W+TFKD  N  S Q  +   V+H SNLCTEI   +   ETAVCNLGS+NL AH   +  D
Sbjct: 416 WMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGVD 475

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P+ S 
Sbjct: 476 WERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSA 535

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G      +   
Sbjct: 536 QAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGA-----EPAQ 590

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             R     W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  MSG
Sbjct: 591 AGR-----WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSG 645

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E+    LI
Sbjct: 646 EFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALI 705

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + A+ R  ++DQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+ 
Sbjct: 706 DLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVA 765

Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            V   ++ V   V+D  +   SL  P S      CE CQ
Sbjct: 766 PVLAPVSGVVSAVSDDEALACSLENPES------CEACQ 798


>gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus
           sedentarius DSM 20547]
 gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus
           sedentarius DSM 20547]
          Length = 875

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 332/848 (39%), Positives = 473/848 (55%), Gaps = 71/848 (8%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P    ++++   G     +  ++   VE  C GL +V    V ++T   +YDG + ++L+
Sbjct: 31  PARTTMRVVKRSGEHEQVDVTKIVAAVERCCDGLPEVDPLRVATKTISGLYDGATTAELD 90

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA--THHEMQCLYPEYFC 257
              I ++  +   EP Y+++  R L   + +EV          A  T HE Q L  +   
Sbjct: 91  KLAIATAAEMTATEPQYSRLAGRLLAGVIDKEVRGQGIGSFSAAVRTGHE-QGLIGDETA 149

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            ++ E       H S +D D VY A       D+ F+Y GL+ +YDRY L    +R  +E
Sbjct: 150 AFVAE-------HASRLD-DAVYRAQ--AAHADWRFDYFGLRTVYDRYLLRHPLTRAVVE 199

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ + MRV+ GL+    E    AVEF+ LLSS  ++ S+PTLFNSGTRH Q+SSC+L  
Sbjct: 200 SPQYWLMRVSAGLSHTGEE----AVEFFELLSSLAYLPSSPTLFNSGTRHTQMSSCYLID 255

Query: 376 VP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            P DDL  I+    + A L+K++GG+G  ++ +R  GA I GTNG S G++P+L+  + +
Sbjct: 256 SPQDDLDSIYERYHQVAKLSKFAGGIGLAFSRIRSRGALIRGTNGHSNGIVPWLRTLDAS 315

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AVNQGG+RKGA C YLE WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV 
Sbjct: 316 VAAVNQGGRRKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVE 375

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+L  PD V +L DL+G  F+ AY   E + D     V R +SA  L+ +M+  L 
Sbjct: 376 ADGQWSLIDPDAVPELPDLWGPAFDAAYRAAEERGD-----VVRTVSARYLYGRMMRTLA 430

Query: 555 ETGHPWITFKDPCNIRSPQ---------------QHVGVVHSSNLCTEITLNSSSEETAV 599
           +TG  W+TFKD  N    Q               Q   VVH SNLCTEI   +S++ETAV
Sbjct: 431 QTGQGWMTFKDASNRACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEIIEVTSNDETAV 490

Query: 600 CNLGSINLLAHFA----------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           CNLGS+NL AH                      D D+L ST+R AV  LD VIDIN +  
Sbjct: 491 CNLGSVNLAAHLQWSDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYLDRVIDINYYPS 550

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A  SN   R IGLG MG Q     L +P+ +PEA E++    E I   A+  S ELA+
Sbjct: 551 EQAAASNPRWRPIGLGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQLSALERSAELAE 610

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + GA+ +F  +   +G    D  G        +   +T R  W  +++R+   G+RNS  
Sbjct: 611 QFGAHPAFAETRAARGQLQHDLQG--------VEPTQTER--WAAVRQRIADHGLRNSLM 660

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VN+ LV ELK   LW EA+   
Sbjct: 661 IAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFMQVNTALVGELKSLGLWTEAVREK 720

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           LK  +GS+  I  +P++ +++  TA+E+    LIE A+ RQ ++DQ+QSLNL+++ P+  
Sbjct: 721 LKADNGSVAGIADLPEETRRLFRTAWELPQKALIEMAAARQAYVDQSQSLNLFMESPNIG 780

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----GKLNAVPVTDPNSSTHSL 938
           KL  +Y  AW  GLKTTYYLRSR AT ++++T+ GV      G     P     ++  S 
Sbjct: 781 KLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAGVRAGASWGAATGAPGASQPTAPGSP 840

Query: 939 GIPSSCTS 946
           G+    T+
Sbjct: 841 GVVGGLTA 848


>gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 828

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/816 (37%), Positives = 474/816 (58%), Gaps = 23/816 (2%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           + ++  DGT   ++   +   +EEA +GL D  +++  + SE    ++DG++   L+ A+
Sbjct: 3   ITVIKRDGTRAPYDGYEIARSIEEAATGLPDQVARVTQLQSELEITLFDGITSEQLDEAV 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           +  +   ++ +P +  + +R L++ L ++V        +  T  E+   +   F   +  
Sbjct: 63  VGVALQNVKDDPAFDTIASRLLVKTLYKKVFG------EGVTRDEVDAFHGPAFVASVVR 116

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAF 320
           GV+  LL   + + +DL  L   L   RD    Y+G+Q +  RY L   +G+ +E+PQ F
Sbjct: 117 GVELGLLDHRLAERYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQFF 176

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MRV+MGLAL E +    A+ FY+ +S   ++ +  TL N+GT + QLS+CF+  + DD+
Sbjct: 177 WMRVSMGLALDEADPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDDI 236

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++++   L K +GG+G   + +R  G+ I   +  S G IPF+   + T  A+++
Sbjct: 237 EHIAKSVRDVMWLTKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAISR 296

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGK+ GA+C Y+E WH+D  +FLDLR N+GD  RRT   NTA WI D FMKRV  +  W 
Sbjct: 297 GGKKFGALCFYMENWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDWY 356

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P +V DL +L+G  F   Y  Y  +AD G ++  +K+ A   +R +L  L  + HPW
Sbjct: 357 LFDPLDVPDLTELFGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHPW 415

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQF 616
           +T+KD  N R+   + G +H SNLCTEITL    +  AVCNL SINL  H     ++   
Sbjct: 416 LTWKDTINTRALNHNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAHI 475

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+LA + R AVR LDN+IDI   ++ ++++SN  +RA+GLG+MGF   +      Y S
Sbjct: 476 DWDRLAGSTRLAVRQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYES 535

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-E 735
            +A ++ DE MEF+S+HAI AS +LA+ERGAY +F+GS W QG+ PIDS+ LLA  R   
Sbjct: 536 EQAYDLIDEVMEFVSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGVP 595

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           + ++RT+RL WD L+ +V   G+RNS  MA+APTA+I  + G +  +DP +  ++ ++  
Sbjct: 596 VEVDRTTRLDWDALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRATS 654

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG F  VN  LV +L+   LW E +  DL  H G +  ++ +P +L++I+ T+F++ P  
Sbjct: 655 SGKFLEVNRNLVEDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPYA 713

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +  A+R QKWIDQA S N+YL      ++  +Y  AW MG+KTTYYL      + E+ST
Sbjct: 714 FLHVAARAQKWIDQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQST 773

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           +     K+N    + P       G  +  T+  E +
Sbjct: 774 V-----KVNKAASSTPAGGAARRGFGAVATAPVEVQ 804


>gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
 gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
          Length = 792

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 327/794 (41%), Positives = 457/794 (57%), Gaps = 49/794 (6%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           VE   + L +V    V ++T   +YDG + ++L+   I ++  LI +EP Y+K+ AR L 
Sbjct: 43  VERWVADLDEVDPLRVATKTISGLYDGATTAELDKLSIQTAAELISEEPQYSKLAARLLA 102

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             + +EV      + Q+         Y  +    I +   A +   +    D V  A DL
Sbjct: 103 AYVDKEV------RGQQVASFSQSVRY-AHGLGLIGDDTAAFVARNARKLDDAVDPAGDL 155

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +      FEY GL+ + DRY L    SR  +E PQ + +RVA GL    +E    A+ FY
Sbjct: 156 R------FEYFGLRTVADRYLLRQPESRLVVETPQYWLLRVACGL----SETPAEAIGFY 205

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGN 402
            L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+L  I+    + A L+K+SGG+G 
Sbjct: 206 RLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGI 265

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            W+ VRG GA I GTNG+S G++PFLK  +    AVNQGG+RKGA C YLE WH D+EEF
Sbjct: 266 AWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEF 325

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L+LR NTG++ RRTH++N ANWIPD FM+RV  +  W+L  P +  +L DLYG+EF+ AY
Sbjct: 326 LELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLIDPSDAPELPDLYGEEFDAAY 385

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVH 580
              E++A        R + A  L+ +M+  L +TG+ W+TFKDP N  S Q  V    +H
Sbjct: 386 RIAEKKA-------IRTVKARDLYGRMMRTLAQTGNGWMTFKDPSNRLSNQTGVPGNTIH 438

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEI   +S  ETAVCNLGSINL AH   +  D+ KL ST+RTAV  LD VIDIN 
Sbjct: 439 LSNLCTEILEVNSDTETAVCNLGSINLGAHVTVDGVDWVKLRSTVRTAVVFLDRVIDINY 498

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +   +A  SN   R +GLGLMG Q A   L +P+ S  A E++    E I   A+  S  
Sbjct: 499 YPATQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAG 558

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           L++  G + ++  +   +G    D  G        +   +T R  W  L+  +   G+RN
Sbjct: 559 LSERFGPHPAYAETRAARGELHPDLWG--------VEPTQTER--WAALRATIAAHGLRN 608

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +AIAPTATIA+I G  + I+P   NL+ +  MSG+F  +N++LV ELK   LW   +
Sbjct: 609 SLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLVRELKAHGLWTPQI 668

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              +K  +GS+  I+ +P D++++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P
Sbjct: 669 RDQIKRAEGSVQGIDDLPADVRELFRTAWELPQRTLIDLAAARAPYIDQSQSLNLFLSAP 728

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +  KL  +Y  AW  GLKTTYYLRSR AT ++++T+         V V+D  +   SL  
Sbjct: 729 TIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATV----AVKPVVAVSDTEALACSLEN 784

Query: 941 PSSCTSDTECEVCQ 954
           P S      CE CQ
Sbjct: 785 PES------CEACQ 792


>gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
 gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
          Length = 909

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 326/806 (40%), Positives = 458/806 (56%), Gaps = 51/806 (6%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           VE   + L +V    V ++T   +YDG + ++L+   I ++  LI +EP Y+K+ AR L 
Sbjct: 138 VERWVADLDEVDPLRVATKTISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLA 197

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             + +EV      + Q+         Y        +E       +   +D D V  A DL
Sbjct: 198 AYVDKEV------RGQQVASFSQSIRYAHGLGLISDETAAFVSRNARKLD-DAVDPAGDL 250

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +      FEY GL+ + DRY L    SR  +E PQ + +RVA GL+    E    A+ FY
Sbjct: 251 R------FEYFGLRTVADRYLLRHPQSRLVVETPQYWLLRVACGLSGTPAE----AIGFY 300

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGN 402
            L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+L  I+    + A L+K+SGG+G 
Sbjct: 301 RLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGI 360

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            W+ VRG GA I GTNG+S G++PFLK  +    AVNQGG+RKGA C YLE WH D+EEF
Sbjct: 361 AWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEF 420

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L+LR NTG+D RRTH++N ANW+PD FM+RV  +  W+L  P E  +L DLYG+EF+ AY
Sbjct: 421 LELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLIDPSEAPELPDLYGEEFDAAY 480

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVH 580
              E+       K  R + A  L+ +M+  L +TG+ W+TFKD  N  S Q  +    +H
Sbjct: 481 RVAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGEPGNTIH 533

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEI   ++  ETAVCNLGS+NL AH   +  D++KL  T+RTAV  LD VIDIN 
Sbjct: 534 LSNLCTEILEVNNDAETAVCNLGSVNLGAHVTADGVDWEKLRDTVRTAVVFLDRVIDINY 593

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +  E+A  SN   R +GLGLMG Q A   L +P+ S EA E++    E I   A+  S  
Sbjct: 594 YPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAG 653

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+  G + ++  +   +G    +  G +                W  LK RV   G+RN
Sbjct: 654 LAERFGPHPAYAQTRAARGDLHPELWGAVPSQPQR----------WAGLKARVGEHGLRN 703

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +AIAPTATIA+I G  + I+P   NL+ +  MSG+F  VN++LV ELK R LW  ++
Sbjct: 704 SLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTASI 763

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              +K  +GS+  +  +P +++++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P
Sbjct: 764 RDQIKRAEGSVQGLAELPAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAP 823

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK-------GVDGKLNAVPVTDPNS 933
           +  KL  +Y  AW  GLKTTYYLRSR AT ++++T+        GV    +A P    +S
Sbjct: 824 TIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVTSTAQPGVAVASSAQPGGAASS 883

Query: 934 -----STHSLGIPSSCTSDTECEVCQ 954
                 T +  +  S  +   CE CQ
Sbjct: 884 ISGFAGTDAEALACSLENPESCEACQ 909


>gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
 gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
          Length = 821

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 327/834 (39%), Positives = 468/834 (56%), Gaps = 58/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     +  ++   VE   + L +V    V ++T   +YDG + ++L+   I 
Sbjct: 22  MEVRKRNGDTEPVDVNKIVKAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRLSIQ 81

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+K+ AR L   + +EV      + Q+         Y  +    I +  
Sbjct: 82  TAAELIGEEPQYSKLAARLLAAYVDKEV------RGQQVASFSQSIRY-AHGLGLISDDT 134

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322
            A +   +    D V  A DL+      FEY GL+ + DRY L    SR  +E PQ + +
Sbjct: 135 AAFVSRNARKLDDAVDPAGDLR------FEYFGLRTVADRYLLRHPQSRLVVETPQYWLL 188

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA G++    E    A+ FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D+L 
Sbjct: 189 RVACGMSRTPAE----AIGFYQLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRDELD 244

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +    AVNQG
Sbjct: 245 SIYQRYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAVNQG 304

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++N ANW+PD FM+RV  +  W+L
Sbjct: 305 GRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSL 364

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P +  +L DLYG EF+ AY   E+       K  R + A  L+ +M+  L +TG+ W+
Sbjct: 365 IDPSDAPELPDLYGDEFDAAYRVAEK-------KAVRTVKARDLYGRMMRTLAQTGNGWM 417

Query: 562 TFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           TFKD  N  S Q  Q    +H SNLCTEI   ++  ETAVCNLGS+NL AH   +  D++
Sbjct: 418 TFKDRSNTLSNQTGQPANTIHLSNLCTEILEVNNDTETAVCNLGSVNLGAHVTVDGVDWE 477

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P+ S EA
Sbjct: 478 KLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEA 537

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E++    E I   A+  S  LA+  G + ++  +   +G    D  G            
Sbjct: 538 SELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAARGDLHPDLWGATP--------T 589

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +T R  W  LK R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  MSG+F
Sbjct: 590 QTRR--WAGLKARIAEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEF 647

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN++LV ELK R LW   +   ++  +GS+  +  +P +++++  TA+E+    LI+ 
Sbjct: 648 LQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGELPAEVRELFRTAWELPQRALIDL 707

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL--- 916
           A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+   
Sbjct: 708 AAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTYYLRSRPATRIQQATVAVT 767

Query: 917 ----KGVDGKLNAVPVTDP------------NSSTHSLGIPSSCTSDTECEVCQ 954
                GV    +A P   P             + T +  +  S  +   CE CQ
Sbjct: 768 PTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAEALACSLENPESCEACQ 821


>gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL044PA1]
          Length = 854

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/786 (38%), Positives = 457/786 (58%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFP 123

Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IE 315
           R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L     + +E
Sbjct: 124 RTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH     
Sbjct: 424 TSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPR 483

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LWD     +L    G    I+ IP  L+ ++ T+F 
Sbjct: 663 SRTTSAGKFLEVNRNLVADLKDLGLWDSTR-EELLRRQGDPSEIDAIPASLRHLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA2]
 gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium sp. P08]
          Length = 854

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/786 (38%), Positives = 457/786 (58%), Gaps = 12/786 (1%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESD 197
           PI+  +++   DG+L  ++   +   + ++  GL D  ++  L  +E    ++DG++   
Sbjct: 5   PIS-TIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTDA 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  YF 
Sbjct: 64  LDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYFP 123

Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IE 315
           R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L     + +E
Sbjct: 124 RTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKALE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF+  
Sbjct: 184 VPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVMR 243

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T 
Sbjct: 244 TEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDSTL 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV +
Sbjct: 304 RAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVAK 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  L  
Sbjct: 364 DEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQT 423

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611
           T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH     
Sbjct: 424 TSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGPR 483

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  + 
Sbjct: 484 GKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQIR 543

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +L  
Sbjct: 544 VPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLER 603

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP +  ++
Sbjct: 604 DRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQMF 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +G F  VN  LV +LK   LWD     +L    G    I+ IP  L+ ++ T+F 
Sbjct: 663 SRATSAGKFLEVNRNLVADLKDLGLWDSTR-EELLRRQGDPSEIDAIPASLRHLYRTSFT 721

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      +
Sbjct: 722 LDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRHT 781

Query: 911 VEKSTL 916
            E+ST+
Sbjct: 782 AEQSTV 787


>gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 804

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 311/791 (39%), Positives = 452/791 (57%), Gaps = 48/791 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V +   +  + G  E++L +    ++  LI +EP Y+K+ AR L                
Sbjct: 45  VAAAALRGRHPGSDEAELRSLATEAAAGLIGEEPEYSKLAARLL---------------- 88

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------F 293
            +A   E      + F   +  G +  L+ +S  +F   + A  D   +R  A      F
Sbjct: 89  TRAIADEAAGQGADSFSASVAVGHREGLIADSTAEFVTAHTARLDALVDRALADGADDRF 148

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFH 350
            Y GL+ L+ RY L   I    IE PQ F +RVA GLA   +E+    V E Y + S+  
Sbjct: 149 GYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDDVAELYRMTSTLS 208

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R 
Sbjct: 209 YLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRA 268

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH D+EEFL+LR NT
Sbjct: 269 RGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADIEEFLELRDNT 328

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G++ RRTH++N A+WIPD FM+RV  +  W+LFSP +  +L DL+G+EF+ AY   E   
Sbjct: 329 GEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVDAPELVDLWGEEFDAAYRKAE--- 385

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTE 587
              E +  +++ A  L+ +M+  L +TG+ W+TFKD  N  + Q      VVHSSNLCTE
Sbjct: 386 --AEGRALKQVPARQLYSRMMRTLAQTGNGWMTFKDAANRTANQTAEAGRVVHSSNLCTE 443

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +   ETAVCNLGS+NL AH   + + D+++L  T+RTAV  LD V+DIN +  E+A
Sbjct: 444 ILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDRTVRTAVTFLDRVVDINFYPTEEA 503

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN   R +GLGLMG Q     L +P+ SPEA  ++    E I   A  AS +LA+  G
Sbjct: 504 GASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALSTRISERIMLAAYEASCDLAERHG 563

Query: 707 AYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            + ++  +   +GV  P    G  A   +           W+ L+ R+ T GMRNS  +A
Sbjct: 564 PHPAWAETRTARGVLHPDHYTGAQAAWPER----------WEALRTRMATTGMRNSLLLA 613

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LVN+LK+  +WD      L+
Sbjct: 614 IAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLVNDLKKLGVWDTQTRDALR 673

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
             +GS+ ++  +P D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL++  P+  KL
Sbjct: 674 EANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSLNLFMAAPTIGKL 733

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             +Y  AW  G+KTTYYLRSR AT + +S   G       VP   P   T       +C+
Sbjct: 734 SSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAATATTPVPAPVPAQQTPDEADAVACS 793

Query: 946 SDT--ECEVCQ 954
            +    CE CQ
Sbjct: 794 LENPESCEACQ 804


>gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase, subunit alpha [Catenulispora
           acidiphila DSM 44928]
 gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 841

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 324/798 (40%), Positives = 451/798 (56%), Gaps = 62/798 (7%)

Query: 169 ACSG-LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           ACS  L D+    V+ +T+  +  G     +    + S+  LI +EP Y+K+ AR L   
Sbjct: 94  ACSADLPDIDVNRVVRKTFAGLPPGAGADQVADLAVQSAAELIGEEPQYSKLAARLLSGV 153

Query: 228 LRREVL---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD-LVYLAN 283
           + RE      T +       H E            +   V   L+  +   FD  +  A 
Sbjct: 154 IAREAAGQGATSFSASVAVGHREG-----------LIGDVTEALITGAAARFDAAIDPAG 202

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE 341
           DL+      FEY GL+ +YDRY L    +R  IE PQ F +RVA GL    ++  + AV 
Sbjct: 203 DLR------FEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGL----SQDPQEAVG 252

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
           FY L+SS  ++ S+PTLFNSGTRH Q+SSC+L   P D+L  I+    + A L+K++GG+
Sbjct: 253 FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVARLSKFAGGI 312

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ VR  GA I  TNG+S G++PFL+  + +  AVNQGG+RKGA C YLE WH D+E
Sbjct: 313 GIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLEPWHPDIE 372

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL LR NTG+D RRTH++N ANWIPD FM+RV  +  W+L  PD+V +L DL+G EF+ 
Sbjct: 373 EFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPDLWGAEFDA 432

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GV 578
           AY   E      E +  R++SA  L+ KM+  L +TG+ W+TFKD  N    Q  V    
Sbjct: 433 AYRKAE-----AEGRYSRQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCNQTGVPGNT 487

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           VH SNLCTEI   SS  ETAVCNLGSINL AH   A +  D+D+L +T+RTAV  LD VI
Sbjct: 488 VHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTAVVFLDRVI 547

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN +  E+   SN   R +GLGLMG Q     L +P+    A E++    E I   A+ 
Sbjct: 548 DINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISEEIYLTALE 607

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S  LA+E GA+ +F  +   +G    D   +      ELA        W+ ++ RV   
Sbjct: 608 TSAGLAEEFGAHPAFADTRAAKGDLQPDLWNV--ATSPELATR------WNAVRGRVAAT 659

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  +NS LV ELK   LW
Sbjct: 660 GLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELKALGLW 719

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+   +K  +GS+  +E +P +++ ++ TA+E+    LI+ A+ R  +IDQ+QSLNL+
Sbjct: 720 TPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQSLNLF 779

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           L  P+  KL  +Y  AW  GLK+TYYLRSR AT ++++T+     +  A  + +P S   
Sbjct: 780 LAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPATRIQQATVAVAAEEAVACSLENPES--- 836

Query: 937 SLGIPSSCTSDTECEVCQ 954
                        CE CQ
Sbjct: 837 -------------CEACQ 841


>gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Kitasatospora setae KM-6054]
          Length = 804

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 317/808 (39%), Positives = 456/808 (56%), Gaps = 49/808 (6%)

Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           ++ +  + L  V    V +   +  + G   ++L    + ++ ++I ++P Y+K+ AR L
Sbjct: 28  LLTDRSTDLPQVDPGHVAAAALRGRHAGSDFAELRGLAVEAAASMIAEDPQYSKLAARLL 87

Query: 225 LEKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
             ++R E  T   T +       H E            I +   A +   + +   LV  
Sbjct: 88  ALEIRDEAATQQVTSFSSSVAVGHAEG----------LIGDATAAFVAAHADLFDSLVDE 137

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           A D +      FEY GL+ +  RY L   I    +E PQ F +RVA GLA+  +E+  R 
Sbjct: 138 AGDDR------FEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAVGTSEESVRE 191

Query: 340 V-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
           V E Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 192 VAELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNRYAQIARLSKHA 251

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG+S G++PFL+  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 252 GGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLETWHA 311

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  NA W+LFSP +V +L DL+G +
Sbjct: 312 DIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPADVPELVDLWGAD 371

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           F+ AY   E        K  R I A  L+ +M+  L +TG+ W+TFKD  N  + Q  + 
Sbjct: 372 FDEAYVKAELAG-----KAVRTIPAQTLYARMMRTLAQTGNGWMTFKDASNRAANQTALP 426

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLASTIRT 627
              VHSSNLCTEI   +   ETAVCNLGS+NL AH A         N  D+D+L +T+RT
Sbjct: 427 GRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDWDRLDATVRT 486

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  LD VIDIN +   +A  SN   R +GLG+MG Q     L I + S EAV ++    
Sbjct: 487 AVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAEAVALSTLIA 546

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A   S +LA+  G + ++  +   +G   +D  G         A N      WD
Sbjct: 547 ERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFG---------AANPQWTERWD 597

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ R+  +G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV
Sbjct: 598 ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNPYLV 657

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            ELK+  +WD+     L+  +GSI     +P +++ ++ TA+E+    LI+ A+ RQ +I
Sbjct: 658 RELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQPYI 717

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLNL++  P+  KL  +Y  AW +GLKTTYYLRSR AT + ++           VP
Sbjct: 718 DQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPATRIAQAAPG-AARTAAPVP 776

Query: 928 VTDPN-SSTHSLGIPSSCTSDTECEVCQ 954
           V  P  S      I  S  +   CE CQ
Sbjct: 777 VQTPTLSQAEQDAIACSLENPESCEACQ 804


>gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 771

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 319/801 (39%), Positives = 459/801 (57%), Gaps = 59/801 (7%)

Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +V    SGL DV ++ V        + G +E++L    +  + +L+  EP Y+++ AR L
Sbjct: 19  VVRRLASGLADVEAETVSGPVVAGNWPGATEAELRLRAVEVAASLVATEPGYSRLAARLL 78

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF------DL 278
            E +  EV  +           ++ C     F   +  G +A L+ + + +F       L
Sbjct: 79  SEHIGDEVRLS-----------DVGC-----FSEAMSAGYRAGLISDGLWEFVSSNAPKL 122

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKE 336
             L +D   +R   FEY G++ +YDRY L    +R+  E PQ FFMRVA GL    +E  
Sbjct: 123 DALVDDGADDR---FEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGL----SETV 175

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395
               E Y LLS+  ++ S+PTLFN+GTR  QLSSCFL   P D+L  I+    + A L+K
Sbjct: 176 SDVTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQAARLSK 235

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           Y+GG+G  W+ +R  G+ I GTNG S G++P+L+  + +  AVNQGG+RKGA C YL TW
Sbjct: 236 YAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYLATW 295

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EEFL+LR NTG + RRTH++N ANWIPD FM+RV  +  W+LF P +V +L DL+G
Sbjct: 296 HADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPELVDLWG 355

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE AY + E        K  R +SA  L+ +M+  L +TG+ W+TF D  N    Q  
Sbjct: 356 EEFEKAYRDAEAAG-----KAARVVSARDLYGRMMRTLAQTGNGWMTFADISNRTCNQTA 410

Query: 576 V--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           V   VVH SNLCTEI   +S  ETAVCNLGS+NL AH  +  FD+++LA ++RTAV  LD
Sbjct: 411 VPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRTAVTFLD 470

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID+  +   +A+K+N   R IGLGLMG       L +P+ S EA E+++   E I+  
Sbjct: 471 RSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRISETIALA 530

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A   S +LA   GA+ S+  +   +GV  +D     A V D  A        W  +++ V
Sbjct: 531 AYETSADLAARLGAHPSYDDTRAARGVLHVDHFA-DAAVTDPDA--------WQRVRELV 581

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +AIAPTATIA I G S+  +P   N++ +  +SG+F  VN +L+ +LKQR
Sbjct: 582 AANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADLKQR 641

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW+E +   +   +GSI +I  IP +L++++ TA+E+    LI+ A+ R  +IDQ+QSL
Sbjct: 642 GLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQSQSL 701

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NL++  P+  KL  +Y  AW  GLKTTYYLRSR AT + ++T+            + P  
Sbjct: 702 NLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPATRINQTTV-----------ASAPEV 750

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
              +  I  S  +   CE CQ
Sbjct: 751 DAEAEAIACSLENPETCEACQ 771


>gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 793

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 319/798 (39%), Positives = 458/798 (57%), Gaps = 52/798 (6%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR L   
Sbjct: 37  ELTADLPDTDPGRVAAAALRGRSARADEAELRDLATEAAAGLISEDPAYSRLAARLLTIG 96

Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +R E  +   T + +     H E   L  +    ++        LH + +D  +   A+D
Sbjct: 97  IRAEAASQGVTSFTESVVVGHRE--GLIADRTAEFVR-------LHAARLDALIDPAADD 147

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE- 341
                   F Y GL+ L+ RY L    +R  +E PQ F +RVA GLA   T +    V  
Sbjct: 148 R-------FGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAEDHTARSVDEVAA 200

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
            Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+
Sbjct: 201 LYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHAGGI 260

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH DVE
Sbjct: 261 GLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDVE 320

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V +L DL+G+EF+ 
Sbjct: 321 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVPELVDLWGEEFDT 380

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
           AY   E    +G  K  R + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   V
Sbjct: 381 AYRAAEA---KGLAK--RTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 435

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           VHSSNLCTEI   +S  ETAVCNLGS+NL A    +    D+D+L +T+RTAV  LD V+
Sbjct: 436 VHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDATVRTAVTFLDRVV 495

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I   A  
Sbjct: 496 DINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYE 555

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+  G   +++ +   +GV   D          ++ +    R  W  L++R+   
Sbjct: 556 ASADLAERSGPLPAWEKTRTARGVLHPDHY--------DVELTWPER--WAALRERIAAT 605

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELK+  +W
Sbjct: 606 GMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKRLGVW 665

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D      L+   GS+ +   IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL+
Sbjct: 666 DARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLF 725

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++    V  +  A P  DP +   
Sbjct: 726 LETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQATVPAQ--ATP--DPEAVAC 781

Query: 937 SLGIPSSCTSDTECEVCQ 954
           SL  P S      CE CQ
Sbjct: 782 SLENPES------CEACQ 793


>gi|239944173|ref|ZP_04696110.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 807

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 314/770 (40%), Positives = 443/770 (57%), Gaps = 40/770 (5%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251
           E++L +    ++  LI ++P Y+++ AR L   +  E      T +       H E   L
Sbjct: 68  EAELRSLATEAAAGLISEDPAYSRLAARLLTLSIADEAAGQGATSFSASVAVGHRE--GL 125

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309
             +    ++E       LH   +D +LV     L    D  F Y GL+ L+ RY L   I
Sbjct: 126 IADRTAAFVE-------LHAKALD-ELV--ERTLAEGADDRFGYFGLRTLHSRYLLRHPI 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
               IE PQ F +RVA GLA  E+ +        Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 176 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 235

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 236 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD
Sbjct: 296 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 355

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
            FM+RV  +  W+LFSP +V +L DL+G  F+ AY   E +       + RK + A  L+
Sbjct: 356 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 409

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
            +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   ++  ETAVCNLGS
Sbjct: 410 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGS 469

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL A  AN   D+D+L ST+RTAV  LD V+DIN +  E+A  SN   R +GLG MG Q
Sbjct: 470 VNLGAFVANGSIDWDRLDSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 529

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++ +  E I   A  AS +LA+  G   ++  +   +GV   D
Sbjct: 530 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPD 589

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                     +  +N   R  WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P
Sbjct: 590 HY--------DTELNWPER--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 639

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VN++LV+ELK+  +WD      L+   GS+     IP+D++ +
Sbjct: 640 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 699

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 700 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 759

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++           +PV    S+  +  I  S  +   CE CQ
Sbjct: 760 SRPATRIARAASG-QASAAAPIPVQQ-ASAPDADAIACSLENPESCEACQ 807


>gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
 gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
          Length = 797

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 320/829 (38%), Positives = 467/829 (56%), Gaps = 48/829 (5%)

Query: 139 APIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           AP AP+ +    D G         L   + E  + L D     V +   +       E++
Sbjct: 4   APSAPRAESDPSDTGIETGGPGAALLRTLTELTADLPDTDPGRVAAAALRGRSAAADEAE 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCLYPE 254
           L +    ++  LI ++P Y+++ AR L   +R E      T +       H E   L  +
Sbjct: 64  LRSLATEAAAGLISEDPAYSRLAARLLTLAVRDEAAGQGATSFSASVAVGHRE--GLIAD 121

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
               ++E    ARL  ++++++ L   A+D        F + GL+ L+ RY L   I   
Sbjct: 122 RTAAFVEAHA-ARL--DALVEYTLAEGADD-------RFGFFGLRTLHSRYLLRHPITRQ 171

Query: 313 RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            +E PQ F +RVA GLA  E+ +  +     Y L+S   ++ S+PTLFNSGTRHPQ+SSC
Sbjct: 172 VVETPQHFMLRVACGLAADESVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSC 231

Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           +L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK 
Sbjct: 232 YLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKT 291

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+W+PD FM
Sbjct: 292 LDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFM 351

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +RV  +A W+LFSP +V +L DL+G +F+ AY   E  AD     + RK + A  L+ +M
Sbjct: 352 RRVNADADWSLFSPADVPELVDLWGDDFDAAYRKAE--AD----GLARKTMPARDLYGRM 405

Query: 550 LTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   ++  ETAVCNLGS+NL
Sbjct: 406 MRTLAQTGQGWMTFKDASNRTANQTAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNL 465

Query: 608 LAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
            A       + D+++L  T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q 
Sbjct: 466 GAFVLTETGEIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQD 525

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               L +P+ SPEA  ++ +  E I   A  AS +LA+  G   +++ +   +GV   D 
Sbjct: 526 VFFKLKLPFDSPEAKALSTKLSERIMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDH 585

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    +  +N   R  WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P 
Sbjct: 586 Y--------DTELNWPER--WDALRARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQ 635

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             NL+ +  +SG+F  VN +LV ELK+  +WD      L+   GS+     IP ++++++
Sbjct: 636 VSNLFKRETLSGEFLQVNGYLVEELKKLGVWDAQSREALREASGSVQGFGWIPAEVRELY 695

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRS
Sbjct: 696 RTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 755

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           R AT + ++          A PV  P +   +  +  S  +   CE CQ
Sbjct: 756 RPATKIARAAQA-------ATPVALPQAVVDAEALACSLENPESCEACQ 797


>gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces jumonjinensis]
          Length = 811

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 308/793 (38%), Positives = 445/793 (56%), Gaps = 48/793 (6%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           L D     V +   +  + G   ++L      ++  LI ++P Y+++ AR L   +  E 
Sbjct: 56  LPDTDPGRVAAAALRGRHAGSDAAELRGLATDAAAGLISEDPAYSRLAARLLTRTIADEA 115

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---LKYER 289
                 + Q A            F   +  G    L+ +    F  ++ A     +    
Sbjct: 116 ------EGQGAVS----------FSASVAVGFAEGLIADRTAAFVTLHAARLDALIDPAA 159

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346
           D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++ +        Y L+
Sbjct: 160 DDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSTRALDEVAALYRLM 219

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 220 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYS 279

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH DVEEFL+L
Sbjct: 280 RVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLEL 339

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G +F+ AY   
Sbjct: 340 RDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVPELVDLWGDDFDTAY--- 396

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583
            R+A+   +   + + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +    VHSSN
Sbjct: 397 -RRAEAAGL-ARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGRTVHSSN 454

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           LCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  LD V+DIN +  
Sbjct: 455 LCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVRTAVTFLDRVVDINFYPT 514

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A +SN+  R +GLG MG Q     L +P+ SP A  ++    E I   A  AS +LA+
Sbjct: 515 EQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIMLAAYEASADLAE 574

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNS 761
             G   ++  +    GV   D              N T   P  W+ L++R+   G+RNS
Sbjct: 575 RHGPLPAWNETRTAHGVLHPDH------------YNTTPHWPDRWNALRERIAATGLRNS 622

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV ELK   +WD    
Sbjct: 623 LLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKNLGVWDATTR 682

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             L+  +GSI N  ++P D+++++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+
Sbjct: 683 EALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQSLNLFLETPT 742

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             KL  +Y  AW  G+KTTYYLRSR AT + ++      G    VPV  P  +T    + 
Sbjct: 743 IGKLSSMYAYAWKQGIKTTYYLRSRPATRIARAASNTNAGA--TVPV--PAQTTPEDAVA 798

Query: 942 SSCTSDTECEVCQ 954
            S  +   CE CQ
Sbjct: 799 CSLENPESCEACQ 811


>gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
 gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
          Length = 802

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 317/798 (39%), Positives = 456/798 (57%), Gaps = 56/798 (7%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
           A + L+  SS+   +E    + +  +E+         +  LI ++P Y+K+ AR L   +
Sbjct: 49  AAAALRGRSSRAATAEMVAELRELATEA---------AAGLISEDPAYSKLAARLLAIGI 99

Query: 229 RREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           R E  +   T + +     H E   L  +    ++        +H + +D  LV  A D 
Sbjct: 100 RAEAASQGVTTFTESIAVGHRE--GLVADRTAEFVR-------VHGARLDA-LVDPAGDD 149

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE-F 342
           +      F Y GL+ L+ RY L    +R  +E PQ F +RVA GLA  +T +    V   
Sbjct: 150 R------FGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAEDDTPRAVDEVSAL 203

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLG 401
           Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G
Sbjct: 204 YGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIG 263

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EE
Sbjct: 264 LSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEE 323

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G+EFE A
Sbjct: 324 FLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVPELVDLWGEEFEAA 383

Query: 522 YENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
           Y   E         + RK I+A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   V
Sbjct: 384 YRKAEANG------LARKTIAARDLYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 437

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           VHSSNLCTEI   +   ETAVCNLGS+NL A    A    D+++L  T+RTAV  LD V+
Sbjct: 438 VHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDETVRTAVTFLDRVV 497

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I   A  
Sbjct: 498 DINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYE 557

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+  G   +++ +   +GV   D  G+      E A +      W  L++RV   
Sbjct: 558 ASADLAERNGPLPAWEKTRTARGVLHPDHYGV------EPAWSER----WAALRERVAAT 607

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRN+  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV +LK+  +W
Sbjct: 608 GMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVRDLKELGVW 667

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D      L+  +GS+ +   IP D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL+
Sbjct: 668 DARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQSQSLNLF 727

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV     +T 
Sbjct: 728 LETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQGQARQPETTVPV---QQATS 784

Query: 937 SLGIPSSCTSDTECEVCQ 954
              +  S  +   CE CQ
Sbjct: 785 EEALACSLENPESCEACQ 802


>gi|182436092|ref|YP_001823811.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 804

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 311/770 (40%), Positives = 439/770 (57%), Gaps = 40/770 (5%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251
           E++L +    ++  LI ++P Y+++ AR L   +  E      T +       H E   L
Sbjct: 65  EAELRSLATEAAAGLISEDPAYSRLAARLLTRTIADEAAGQGATSFSASVAVGHRE--GL 122

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309
             +    ++        LH + +D     +   L    D  F Y GL+ L+ RY L   I
Sbjct: 123 IADRTAAFVA-------LHATALD---QLVGQALTDGADDRFGYFGLRTLHSRYLLRHPI 172

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
               IE PQ F +RVA GLA  E+ +        Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 232

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD
Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
            FM+RV  +  W+LFSP +V +L DL+G  F+ AY   E +       + RK + A  L+
Sbjct: 353 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
            +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   +   ETAVCNLGS
Sbjct: 407 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGS 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL A  AN   D+D+L ST+RTAV  LD V+DIN +  E+A  SN   R +GLG MG Q
Sbjct: 467 VNLGAFVANGSIDWDRLDSTVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 526

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++ +  E I   A  AS +LA+  G   ++  +   +GV   D
Sbjct: 527 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSKTRAARGVLHPD 586

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                        +N   R  WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P
Sbjct: 587 HYA--------TELNWPDR--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 636

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VN++LV+ELK+  +WD      L+   GS+     IP+D++ +
Sbjct: 637 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 696

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 697 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 756

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++           +PV    S+  +  I  S  +   CE CQ
Sbjct: 757 SRPATRIARAASG-QASAAAPLPVQQ-ASAPDADAIACSLENPESCEACQ 804


>gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           avermitilis MA-4680]
 gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptomyces avermitilis MA-4680]
          Length = 793

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 313/772 (40%), Positives = 445/772 (57%), Gaps = 50/772 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E++L      ++  LI ++P Y+++ AR L   +  E  +      Q  T          
Sbjct: 60  EAELRELATEAAAGLISEDPAYSRLAARLLTISIAEEAAS------QGVTS--------- 104

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLAND---LKYERDFAFEYLGLQILYDRYFLH--I 309
            F   I  G +  L+ +   DF  ++ A     +    D  F Y GL+ L+ RY L   I
Sbjct: 105 -FSASITVGHREGLVADRTADFVRLHTARLDALIDTGADDRFGYFGLRTLHSRYLLRHPI 163

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQL 368
               IE PQ F +RVA GLA  +T      V   Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 164 TRRVIETPQHFMLRVASGLAEDDTSHAVDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQM 223

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 224 SSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPF 283

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD
Sbjct: 284 LKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPD 343

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+RV +N  W+LFSP +V +L DL+G EF+ AY   E   + G  K  + I A  L+ 
Sbjct: 344 EFMRRVNENGVWSLFSPADVPELVDLWGDEFDAAYRKAE---EAGLAK--KTIPARDLYG 398

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +M+  L +TG+ W+TFKD  N  + Q  +   VVHSSNLCTEI   +   ETAVCNLGS+
Sbjct: 399 RMMRTLAQTGNGWMTFKDAANRTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSV 458

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A       D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q 
Sbjct: 459 NLGAFVVGRDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQD 518

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               L +P+ SPEA  ++    E I   A  AS +LA+  G   +++ +   +GV   D 
Sbjct: 519 VFFKLRLPFDSPEAQALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDH 578

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    ++ +    R  W  L++R+  +GMRNS  +AIAPTATIA+I GV + I+P 
Sbjct: 579 F--------DVELTWPER--WAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQ 628

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             NL+ +  +SG+F  VNS+LV+ELKQ  +WD      L+   GS+     +P D++ ++
Sbjct: 629 VSNLFKRETLSGEFLQVNSYLVDELKQLGVWDAQTREALRESGGSVQGFTWVPQDVRDLY 688

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRS
Sbjct: 689 RTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRS 748

Query: 906 RSATSVEKSTLKGVDGKLNAVP---VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           R AT + ++       +   +P   V++P++   SL  P S      CE CQ
Sbjct: 749 RPATRIARAAQAQAQPE-KTIPVQQVSEPDAVACSLENPES------CEACQ 793


>gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 810

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 310/792 (39%), Positives = 444/792 (56%), Gaps = 46/792 (5%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           L D     V +   +  + G   ++L      ++  LI ++P Y+++ AR L   +  E 
Sbjct: 55  LPDTDPGRVAAAALRGRHPGSDAAELRGLATDAAAGLIAEDPAYSRLAARLLTLTIGDEA 114

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                 + Q A            F   +  G    L+ +    F  ++ A         A
Sbjct: 115 ------RSQGAVS----------FSASVAVGHTEGLIADRTAAFVALHSARLDALIDLDA 158

Query: 293 ---FEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346
              F Y GL+ LY RY L   I    +E PQ F +RVA GLA  +TE+        Y L+
Sbjct: 159 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAEDDTERALDEVAALYRLM 218

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+G   + A L+K++GG+G  ++
Sbjct: 219 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVARLSKHAGGIGLSYS 278

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 279 RIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 338

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G EF+ AY   
Sbjct: 339 RDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVPELVDLWGDEFDAAY--- 395

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583
            R+A+   +   R + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +    VHSSN
Sbjct: 396 -RKAEAAGL-ARRTLPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSN 453

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           LCTEI   +   ETAVCNLGS+NL A  +    D+++L +T+RTAV  LD V+DIN +  
Sbjct: 454 LCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVRTAVTFLDRVVDINFYPT 513

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA+
Sbjct: 514 EQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRIAERIMLAAYEASADLAE 573

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G   +++ +   +GV   D  G+     +           W  L++RV T GMRNS  
Sbjct: 574 RHGPLPAWEKTRTARGVLHPDHYGVEQHWPER----------WAALRERVATTGMRNSLL 623

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV ELK+  +WD      
Sbjct: 624 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKRLGVWDAQTREA 683

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           L+   GSI     +PD++++++ TA+EI    LI+ A+ R  +IDQ+QSLNL+++ P+  
Sbjct: 684 LRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQSLNLFMETPTIG 743

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD-PNSSTHSLGIPS 942
           KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV   P  +     +  
Sbjct: 744 KLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGTAAAAPATVPVQQVPQDA-----VAC 798

Query: 943 SCTSDTECEVCQ 954
           S  +   CE CQ
Sbjct: 799 SLENPESCEACQ 810


>gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 731

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 296/671 (44%), Positives = 408/671 (60%), Gaps = 42/671 (6%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           D  FEY GL+ +YDRY L    +R  +E PQ FF+RVA GL    +E  + A E Y L+S
Sbjct: 97  DDRFEYFGLRTVYDRYLLRHPRTRQVLERPQHFFLRVACGL----SETVEEAAELYALMS 152

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  ++ S+PTLFNSG+R PQLSSCFL   P D+L  I+    + A L+KY+GG+G  WT 
Sbjct: 153 TLSYLPSSPTLFNSGSRRPQLSSCFLLDSPRDELEAIYERYGQVARLSKYAGGIGIAWTR 212

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  G+ I GTNG S G++P+L+  + +  AVNQGG+RKGA C YLE+WH DVEEFL+LR
Sbjct: 213 VRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYLESWHADVEEFLELR 272

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            NTG++ RRTH++N ANWIPD FM+RV  +  W+LF P EV  L DLYG  FE AY   E
Sbjct: 273 DNTGEEARRTHNLNLANWIPDEFMRRVEADGVWSLFDPKEVPHLTDLYGAAFEEAYRAAE 332

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNL 584
            +      +  ++I A +L+ +M+  L +TG+ W+TFKD  N  S Q  +   V+H SNL
Sbjct: 333 AEG-----RYVKQIPARSLYGRMMRTLAQTGNGWMTFKDAANRTSNQTARPENVIHLSNL 387

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           CTEI   ++  ETAVCNLGSINL AH      D+ +L  T+RTAVR LD  ID+  +   
Sbjct: 388 CTEILEVTNDAETAVCNLGSINLAAHLDGRDVDWTRLRRTVRTAVRFLDRTIDLGFYPTP 447

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N   R IGLG+MG    L  L +P+ SP+A+E++    E I+  A + S +LA E
Sbjct: 448 EAGTANRKWRPIGLGVMGLADVLFALRLPFDSPQALELSTRISEEIALAAYATSSDLAVE 507

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNC 763
           RG + S+  +    GV   D  G              +R P W  L+ R+   G+RNS  
Sbjct: 508 RGRHPSYDDTRAAAGVLHPDHYG-------------AARSPEWAALRDRIAETGLRNSLM 554

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I G  + I+P   N++ +  +SG+F  VN +LV +L+ R LW   +   
Sbjct: 555 IAIAPTATIASIAGCYECIEPQVSNIFKRETLSGEFLQVNRYLVRDLQARGLWTPQIRDA 614

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +K  DGS+ ++  +P+DLK ++ TA+E+    LI+ A+ R  +IDQ+QSLNL++  P+  
Sbjct: 615 IKRADGSVQDVPGMPEDLKSLYRTAWELPQKALIDLAAARTPYIDQSQSLNLFMATPTIG 674

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           KL  +Y  AW  GLKTTYYLRSR AT + ++T+        AVP  DP +   SL  P  
Sbjct: 675 KLSSMYAYAWKSGLKTTYYLRSRPATRIAQTTVA------QAVP--DPEAVACSLENPEY 726

Query: 944 CTSDTECEVCQ 954
                 C+ CQ
Sbjct: 727 ------CDACQ 731


>gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 799

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 309/784 (39%), Positives = 450/784 (57%), Gaps = 39/784 (4%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVY 237
           V +   +  + G   ++L T    ++  LI +EP Y+K+ AR L   +  E        +
Sbjct: 45  VAAAALRGRHPGSDAAELRTLATEAAAGLIAEEPEYSKLAARLLTLAIAEEAAGQGAVSF 104

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                  H E   L  +    ++     ARL  ++++D  L   A+D        F Y G
Sbjct: 105 SSSVAVGHRE--GLIADGTAEFVTSHA-ARL--DALVDKALADGADD-------RFGYFG 152

Query: 298 LQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCS 354
           L+ L+ RY L   I    IE PQ F +RVA GLA   +++    V E Y L S+  ++ S
Sbjct: 153 LRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDHSQRALDDVAELYRLTSTLSYLPS 212

Query: 355 TPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ 
Sbjct: 213 SPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRARGSL 272

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH D+EEFL+LR NTG++ 
Sbjct: 273 IRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADIEEFLELRDNTGEEA 332

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           RRTH++N A+WIPD FM+RV  +A W+LFSP +   L DL+G+EF+ AY   E      E
Sbjct: 333 RRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGEEFDAAYTKAE-----AE 387

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLN 591
               + + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   VVHSSNLCTEI   
Sbjct: 388 GLAVKTVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEPGRVVHSSNLCTEILEV 447

Query: 592 SSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           +   ETAVCNLGS+NL AH   + Q D+ +L +T+RTAV  LD V+DIN +  ++A  SN
Sbjct: 448 TDDGETAVCNLGSVNLAAHLGEDGQMDWARLDATVRTAVTFLDRVVDINFYPTQEAGASN 507

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +GLGLMG Q     L +P+ SPEA +++ +  E I   A  AS  LA+  G + +
Sbjct: 508 SRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLSTQISERIMLAAYEASCALAERHGPHPA 567

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +  +   +GV   D         D +A   T    W  L++R+   GMRNS  +AIAPTA
Sbjct: 568 WSATRTARGVLHPD------HYTDAVA---TWPERWAALRERMAKSGMRNSLLLAIAPTA 618

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TIA+I GV + I+P   NL+ +  +SG+F  VNS+LVN+LK+  +WD      L+  +GS
Sbjct: 619 TIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKKLGVWDAQSREALRESNGS 678

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           + +   +P ++++++ TA+E+    LI+ A+ R  ++DQ+QSLNL++  P+  KL  +Y 
Sbjct: 679 VQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYLDQSQSLNLFMASPTIGKLSSMYA 738

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G+KTTYYLRSR AT + +S           VP+    +      I  S  +   C
Sbjct: 739 YAWKRGIKTTYYLRSRPATRIAQSARA---AAPATVPIPTQQAPVDPEVIACSLENPESC 795

Query: 951 EVCQ 954
           E CQ
Sbjct: 796 EACQ 799


>gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 800

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 311/791 (39%), Positives = 454/791 (57%), Gaps = 49/791 (6%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           L D     V +   +    G   ++L +    ++  LI ++P Y+++ AR L   +  E 
Sbjct: 50  LPDTDPGKVAAAALRGRNAGSDAAELHSLATEAAAGLISEDPAYSRLAARLLTRTIAEEA 109

Query: 233 L---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
                + +       H E   L  +    ++        LH + +D  L+ L  D +   
Sbjct: 110 AGQGASSFTASVATGHRE--GLIADRTAAFVA-------LHAARLDA-LIDLGADDR--- 156

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346
              F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++ +  +     Y L+
Sbjct: 157 ---FGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSPRALEEVAALYRLM 213

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+G   + A L+K++GG+G  ++
Sbjct: 214 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYGRYHQVARLSKHAGGIGLSYS 273

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 274 RIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 333

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+G++F+ AY   
Sbjct: 334 RDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPVDVPELVDLWGEDFDAAY--- 390

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSN 583
            R+A+   +   R +SA  L+ +M+  L +TG+ W+TFKD  N  + Q  +   VVHSSN
Sbjct: 391 -RRAEAAGL-ARRTVSARDLYGRMMRTLAQTGNGWMTFKDASNRTANQTAEPGRVVHSSN 448

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           LCTEI   +   ETAVCNLGS+NL A  + +  D+++L +T+RTAV  LD V+DIN +  
Sbjct: 449 LCTEILEVTDDGETAVCNLGSVNLGAFVSGDGIDWERLDATVRTAVTFLDRVVDINFYPT 508

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA+
Sbjct: 509 EQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALSTRIAERIMLAAYEASCDLAE 568

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G   ++  +   +GV   D          +  +N   R  W+ L+ RV  +GMRNS  
Sbjct: 569 RNGPLPAWAETRTARGVLHPDHY--------DTTLNWPER--WEALRARVAAVGMRNSLL 618

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      
Sbjct: 619 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDAQTREA 678

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           L+   GS+     +P++++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  
Sbjct: 679 LREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIG 738

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           KL  +Y  AW  GLKTTYYLRSR AT + ++    V        VT  ++   SL  P S
Sbjct: 739 KLSSMYAYAWKQGLKTTYYLRSRPATRIARAASAAVPVPAQ---VTPEDAVACSLENPES 795

Query: 944 CTSDTECEVCQ 954
                 CE CQ
Sbjct: 796 ------CEACQ 800


>gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
          Length = 804

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 310/770 (40%), Positives = 439/770 (57%), Gaps = 40/770 (5%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251
           E++L +    ++  LI ++P Y+++ AR L   +  E      T +       H E   L
Sbjct: 65  EAELRSLATEAAAGLISEDPAYSRLAARLLTRTIADEAAGQGATSFSASVAVGHRE--GL 122

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--I 309
             +    ++        LH + +D     +   L    D  F Y GL+ L+ RY L   I
Sbjct: 123 IADRTAAFVA-------LHATALD---QLVGQALTDGADDRFGYFGLRTLHSRYLLRHPI 172

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
               IE PQ F +RVA GLA  E+ +        Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRALDEVAALYGLMSKLDYLPSSPTLFNSGTRHPQM 232

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD
Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
            FM+RV  +  W+LFSP +V +L DL+G  F+ AY   E +       + RK + A  L+
Sbjct: 353 EFMRRVDADTEWSLFSPADVPELVDLWGDAFDAAYRAAEAKG------LARKTMPARELY 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
            +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   +   ETAVCNLGS
Sbjct: 407 GRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGS 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL A  AN   D+D+L +T+RTAV  LD V+DIN +  E+A  SN   R +GLG MG Q
Sbjct: 467 VNLGAFVANGSIDWDRLDATVRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQ 526

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++ +  E I   A  AS +LA+  G   ++  +   +GV   D
Sbjct: 527 DVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSRTRAARGVLHPD 586

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                        +N   R  WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P
Sbjct: 587 HYA--------TELNWPDR--WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEP 636

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VN++LV+ELK+  +WD      L+   GS+     IP+D++ +
Sbjct: 637 QVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRAL 696

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 697 YRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 756

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++           +PV    S+  +  I  S  +   CE CQ
Sbjct: 757 SRPATRIARAASG-QASAAAPLPVQQ-ASAPDADAIACSLENPESCEACQ 804


>gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
 gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
          Length = 798

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 312/798 (39%), Positives = 451/798 (56%), Gaps = 48/798 (6%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  + L D     V +   +       E++L      +S  LI ++P Y+++ AR L   
Sbjct: 38  ELTADLPDADPGRVAAAALRGRSARADEAELRELATEASAGLISEDPAYSRLAARLLTLT 97

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LAND 284
           +R E  +      Q  T           F   +  G +  L+ +   +F  ++   L   
Sbjct: 98  IRAEAAS------QGVTR----------FTESVAVGHREGLIADRTAEFVRLHAERLDAA 141

Query: 285 LKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-E 341
           +    D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA   T+     V  
Sbjct: 142 VDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFMLRVASGLAQDATDHAVDEVTA 201

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
            Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+
Sbjct: 202 LYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGI 261

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+E
Sbjct: 262 GIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIE 321

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+LR NTG+D RRTH++N A+W+PD FM+RV  +  W+LFSP +V +L DL+G EF+ 
Sbjct: 322 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPSDVPELVDLWGAEFDA 381

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
           AY   E   +RG  +  + + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   V
Sbjct: 382 AYRAAE---ERGLAR--KTMPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHV 436

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +HSSNLCTEI   +   ETAVCNLGS+NL A   +   D+++L  T+RTAV  LD V+DI
Sbjct: 437 IHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGDIDWERLDETVRTAVTFLDRVVDI 496

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N +  E+A +SN   R +GLG MG Q     L +P+ S  A  ++    E I   A  AS
Sbjct: 497 NFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAGARALSTRIAERIMLAAYEAS 556

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+  G   +++ +   +GV   D          ++++    R  W  L++R+  +GM
Sbjct: 557 ADLAERHGPLPAWEKTRAARGVLHPDHY--------DVSLTWPER--WTALRERIAAVGM 606

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LVN+LK   +WD 
Sbjct: 607 RNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKALGVWDA 666

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                L+  +GS+ +   IP D++ ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+
Sbjct: 667 RTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLE 726

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST--LKGVDGKLNAVPVTDPNSSTH 936
            P+  KL  +Y  AW  GLKTTYYLRSR AT + ++       +  L A    DP++   
Sbjct: 727 TPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAQGRTPAEAALPAQQTADPDAVAC 786

Query: 937 SLGIPSSCTSDTECEVCQ 954
           SL  P S      CE CQ
Sbjct: 787 SLENPES------CEACQ 798


>gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces coelicolor A3(2)]
          Length = 791

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252
           E++L      ++  LI ++P Y+++ AR L   +R E  +   V      AT H  + L 
Sbjct: 60  EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            +    ++        LH   +D  +   A+D        F Y GL+ LY RY L   I 
Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTRH Q+S
Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G++PFL
Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD 
Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+LFSP +V +L DL+G+EF+ AY    R+A+   +   R + A  L+ +
Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           M+  L +TG+ W+TFKD  N  + Q      VVHSSNLCTEI   +   ETAVCNLGS+N
Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q
Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +GV   D
Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD 579

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV + I+P
Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSMLLAIAPTATIASIAGVYECIEP 629

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+D++ +
Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++  +     + A P  DP +   SL  P S      CE CQ
Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791


>gi|307328556|ref|ZP_07607730.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306885824|gb|EFN16836.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 804

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 307/745 (41%), Positives = 437/745 (58%), Gaps = 44/745 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V +   +  + G  E++L    I ++  LI +EP Y+++ AR L   +  E         
Sbjct: 45  VAAAALRGRHPGSDEAELRGLAIEAAAGLIAEEPEYSRLAARLLALTITEEA------AG 98

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------F 293
           Q A            F   ++ G +  LL +S  +F   + A  D   ER  A      F
Sbjct: 99  QGAVS----------FSTSVQVGHREGLLADSTAEFAAAHAARLDALVERALADGADKRF 148

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFH 350
            Y GL+ LY RY L   I    IE PQ F +RVA GLA   +E+    V E Y L S+  
Sbjct: 149 GYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDDVAELYRLTSTLS 208

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R 
Sbjct: 209 YLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHAGGIGLSYSRIRA 268

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH D+EEFL+LR NT
Sbjct: 269 RGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHADLEEFLELRDNT 328

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G++ RRTH++N A+WIPD FM+RV  +A W+LFSP +   L DL+G EF+ AY   E   
Sbjct: 329 GEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGDEFDAAYRKAE--- 385

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
              E +  +++ A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   VVHSSNLCTE
Sbjct: 386 --AEGRAVKQVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEPGRVVHSSNLCTE 443

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   ++  ETAVCNLGS+NL AH   + Q D+++L +T+ TAV  LD V+DIN +  ++A
Sbjct: 444 ILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWERLDATVHTAVTFLDRVVDINFYPTDEA 503

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN   R +GLGLMG Q     L +P+ SPEA  ++    E I   A  AS ELA+  G
Sbjct: 504 GASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLAAYEASCELAERHG 563

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            + ++  +   +GV   D         D +A   T    W+ L+ R+   GMRNS  +AI
Sbjct: 564 PHPAWSETRTARGVLHPD------HYTDAVA---TWPERWEALRTRMAKSGMRNSLLLAI 614

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+ 
Sbjct: 615 APTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKKLGVWDAHTREALRE 674

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GS+     +P D++ ++ TA+EI    LIE A+ R  ++DQ+QSLNL++  P+  KL 
Sbjct: 675 SNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQSLNLFMASPTIGKLS 734

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSV 911
            +Y  AW  G+KTTYYLRSR AT +
Sbjct: 735 SMYAYAWKRGIKTTYYLRSRPATRI 759


>gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
 gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
          Length = 791

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252
           E++L      ++  LI ++P Y+++ AR L   +R E  +   V      AT H  + L 
Sbjct: 60  EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            +    ++        LH   +D  +   A+D        F Y GL+ LY RY L   I 
Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTRH Q+S
Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G++PFL
Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD 
Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+LFSP +V +L DL+G+EF+ AY    R+A+   +   R + A  L+ +
Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           M+  L +TG+ W+TFKD  N  + Q      VVHSSNLCTEI   +   ETAVCNLGS+N
Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q
Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +GV   D
Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPD 579

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV + I+P
Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 629

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+D++ +
Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++  +     + A P  DP +   SL  P S      CE CQ
Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791


>gi|256785294|ref|ZP_05523725.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           lividans TK24]
          Length = 791

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252
           E++L      ++  LI ++P Y+++ AR L   +R E  +   V      AT H  + L 
Sbjct: 60  EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 118

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            +    ++        LH   +D  +   A+D        F Y GL+ LY RY L   I 
Sbjct: 119 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 164

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTRH Q+S
Sbjct: 165 RKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 224

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G++PFL
Sbjct: 225 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD 
Sbjct: 285 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+LFSP +V +L DL+G+EF+ AY    R+A+   +   R + A  L+ +
Sbjct: 345 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           M+  L +TG+ W+TFKD  N  + Q      VVHSSNLCTEI   +   ETAVCNLGS+N
Sbjct: 400 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 459

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q
Sbjct: 460 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 519

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +GV   D
Sbjct: 520 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPD 579

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV + I+P
Sbjct: 580 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 629

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+D++ +
Sbjct: 630 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 689

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 690 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 749

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++  +     + A P  DP +   SL  P S      CE CQ
Sbjct: 750 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 791


>gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
 gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
          Length = 794

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 313/770 (40%), Positives = 447/770 (58%), Gaps = 48/770 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT--TVYKKPQKATHHEMQCLY 252
           E++L      ++  LI ++P Y+++ AR L   +R E  +   V      AT H  + L 
Sbjct: 63  EAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVVTFTDSVATGHR-EGLI 121

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            +    ++        LH   +D  +   A+D        F Y GL+ LY RY L   I 
Sbjct: 122 ADRTAAFVR-------LHADRLDALIDQDADD-------RFGYFGLRTLYSRYLLRHPIT 167

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTRH Q+S
Sbjct: 168 RKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMS 227

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G++PFL
Sbjct: 228 SCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFL 287

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+WIPD 
Sbjct: 288 KTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDE 347

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+LFSP +V +L DL+G+EF+ AY    R+A+   +   R + A  L+ +
Sbjct: 348 FMRRVDADGTWSLFSPADVPELTDLWGEEFDAAY----RRAEEAGL-ARRTLPARELYGR 402

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           M+  L +TG+ W+TFKD  N  + Q      VVHSSNLCTEI   +   ETAVCNLGS+N
Sbjct: 403 MMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVN 462

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q
Sbjct: 463 LGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQ 522

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +GV   D
Sbjct: 523 DVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPD 582

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV + I+P
Sbjct: 583 HYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEP 632

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+D++ +
Sbjct: 633 QVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRAL 692

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 693 YRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLR 752

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           SR AT + ++  +     + A P  DP +   SL  P S      CE CQ
Sbjct: 753 SRPATRIARAAARATTVPVQAAP--DPEAVACSLENPES------CEACQ 794


>gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 796

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 309/763 (40%), Positives = 436/763 (57%), Gaps = 58/763 (7%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LI ++P Y+++ AR L   +  E  +      Q  T           F   +  G +  L
Sbjct: 75  LISEDPAYSRLAARLLTVSIAAEAAS------QGVTS----------FTGSVAVGHREGL 118

Query: 269 LHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
           + +   +F  V+   L   +  E D  F Y GL+ LY RY L   I    IE PQ F +R
Sbjct: 119 IADRTAEFVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLR 178

Query: 324 VAMGLA---LKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           VA GLA   + ++E    A++     Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   
Sbjct: 179 VASGLADDTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDS 238

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + + 
Sbjct: 239 PKDELDSIYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASV 298

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  
Sbjct: 299 AAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNA 358

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +A W+LFSP +V +L DL+G+EF+ AY   E      E    R I A  L+ +M+  L +
Sbjct: 359 DAEWSLFSPADVPELVDLWGEEFDAAYRKAE-----AEGLARRTIPARDLYGRMMRTLAQ 413

Query: 556 TGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
           TG+ W+TFKD  N  + Q  +    VHSSNLCTEI   +   ETAVCNLGS+NL A    
Sbjct: 414 TGNGWMTFKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDT 473

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q     L 
Sbjct: 474 TSGDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLR 533

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ SPEA  ++    E I   A  AS +LA+  G   +++ +   QGV   D       
Sbjct: 534 LPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHYAT--- 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +LA        W  L++R+   G+RNS  +AIAPTATIA+I GV + I+P   NL+ 
Sbjct: 591 ---DLAWPER----WAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFK 643

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F  VNS+LV ELK+  +WD      L+  +GS+     IP+D++ ++ TA+EI
Sbjct: 644 RETLSGEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTAWEI 703

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +
Sbjct: 704 PQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI 763

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            ++           VPV  P        +  S  +   CE CQ
Sbjct: 764 ARAAQA-------TVPVQQPAPED---AVACSLENPESCEACQ 796


>gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           flavogriseus ATCC 33331]
          Length = 797

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 304/773 (39%), Positives = 441/773 (57%), Gaps = 47/773 (6%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E++L +    ++  LI ++P+Y+++ AR L                 +A   E       
Sbjct: 59  EAELRSLATEAAAGLISEDPSYSRLAARLL----------------TRAVADEAAGQGAV 102

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFA------FEYLGLQILYDRYFL 307
            F   +  G +  L+ +   +F  ++ A  D   +R  A      F Y GL+ L+ RY L
Sbjct: 103 SFSASVAVGHREGLIADRTAEFVTLHAAALDALVDRALADGADDRFGYFGLRTLHSRYLL 162

Query: 308 HINGSR--IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
               +R   E PQ F +RVA GLA   +E+  +     Y L++   ++ S+PTLFNSGTR
Sbjct: 163 RHPLTRQVTETPQHFMLRVAAGLAEDTSERALEEVAALYGLMNRLDYLPSSPTLFNSGTR 222

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           HPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G
Sbjct: 223 HPQMSSCYLLDSPMDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNG 282

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+
Sbjct: 283 IVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAH 342

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPD FM+RV  +  W+LFSP +  +L DL+G EF+ AY   E +         R + A 
Sbjct: 343 WIPDEFMRRVDADTQWSLFSPADAPELVDLWGDEFDAAYRAAEAKG-----LARRTLPAR 397

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCN 601
            L+ +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   +   ETAVCN
Sbjct: 398 ELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCN 457

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL A  A    D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG M
Sbjct: 458 LGSVNLGAFVAEGTIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAM 517

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G Q     L +P+ SPEA  ++ +  E I   A  AS +LA+  G   ++  +   +GV 
Sbjct: 518 GLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVL 577

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D          +  ++   R  WD L+ RV   GMRNS  +AIAPTATIA+I GV + 
Sbjct: 578 HPDHY--------DTELHWPER--WDALRARVARTGMRNSLLLAIAPTATIASIAGVYEC 627

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   NL+ +  +SG+F  VN++LV+ELK+  +WD      L+   GS+     IP+D+
Sbjct: 628 IEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDV 687

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           + ++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTY
Sbjct: 688 RALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTY 747

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YLRSR AT + ++           VPV    S+  +  +  S  +   CE CQ
Sbjct: 748 YLRSRPATRIARAASGQAPAAAT-VPVQ--ASAPDADALACSLENPESCEACQ 797


>gi|239929011|ref|ZP_04685964.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
          Length = 793

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 310/801 (38%), Positives = 453/801 (56%), Gaps = 48/801 (5%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           + E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR L 
Sbjct: 29  LTELTADLPDADPGRVAAAALRGRSARADETELRELATEAAAGLISEDPAYSRLAARLLA 88

Query: 226 EKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
             +R E  +   T +       H E   L  +    ++        LH   +D  +   A
Sbjct: 89  IGIRAEAASQGVTSFTGSVATGHRE--GLIADRTAAFVR-------LHADRLDALIDTGA 139

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +D        F Y GL+ L+ RY L   I    +E PQ F +RVA GLA  ++ +    V
Sbjct: 140 DD-------RFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAEDDSVRSVDEV 192

Query: 341 E-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398
              Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++G
Sbjct: 193 AALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHAG 252

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D
Sbjct: 253 GIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSD 312

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +  W+LFSP +V +L DL+G+EF
Sbjct: 313 IEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVPELVDLWGEEF 372

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +  Y   E      E  + RK + A  L+ +M+  L +TG+ W+TFKD  N  + Q    
Sbjct: 373 DAVYRAAE------EKGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQTATP 426

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLD 633
             V+HSSNLCTEI   +   ETAVCNLGS+NL A    A    D+++L  T+RTAV  LD
Sbjct: 427 GHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRTVRTAVTFLD 486

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I   
Sbjct: 487 RVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLSTRIAERIMLA 546

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS +LA+++G   +++ +   +GV   D          ++ +    R  W  L+ R+
Sbjct: 547 AYEASADLAEDKGPLPAWEKTRTARGVLHPDHY--------DVDLTWPER--WVALRGRI 596

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            + G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+ 
Sbjct: 597 ASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDLKRL 656

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +WDE     L+   GS+     IPDD+++++ TA+EI    LI++A+ R  ++DQAQSL
Sbjct: 657 GVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQAQSL 716

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV  P  
Sbjct: 717 NLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAQA-QPQAQTTVPVQQP-- 773

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
            T    +  S  +   CE CQ
Sbjct: 774 -TPDEAVACSLENPESCEACQ 793


>gi|282861025|ref|ZP_06270090.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
 gi|282563683|gb|EFB69220.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
          Length = 803

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 307/772 (39%), Positives = 437/772 (56%), Gaps = 45/772 (5%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCL 251
           E++L +    ++  LI ++P Y+++ AR L   +  E      T +       H E   L
Sbjct: 65  EAELRSLATEAAAGLISEDPAYSRLAARLLTLTIADEAAGQGATSFSASVAVGHRE--GL 122

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
             +    ++E+       H  ++D     +   L    D  F Y GL+ L+ RY L    
Sbjct: 123 IADRTAAFVEQ-------HAQVLD---ALVERTLADGADDRFGYFGLRTLHSRYLLRHPH 172

Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +R  IE PQ F +RVA GLA  E+ + +  V   Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 173 TRQVIETPQHFMLRVAAGLAEDESVRARDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQM 232

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 233 SSCYLLDSPKDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 292

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD
Sbjct: 293 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 352

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+RV  +  W+LFSP +V +L DL+G  F+ AY   E    RG  +  + + A  L+ 
Sbjct: 353 EFMRRVDADTEWSLFSPADVPELTDLWGDAFDAAYRAAE---ARGLAR--KTMPARELYG 407

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   +   ETAVCNLGS+
Sbjct: 408 RMMRTLAQTGQGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSV 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +    D+++L +T+RTAV  LD V+DIN +  E+A  SN   R +GLG MG Q 
Sbjct: 468 NLGAFVSGGSIDWERLDATVRTAVTFLDRVVDINFYPTEQAGTSNARWRPVGLGAMGLQD 527

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               L +P+ SPEA  ++    E I   A  AS +LA+  G   ++  +   +GV   D 
Sbjct: 528 VFFQLRLPFDSPEARALSTRISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDH 587

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                       +N   R  WD L+ R+   GMRNS  +AIAPTATIA+I GV + I+P 
Sbjct: 588 YA--------TELNWPER--WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQ 637

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             NL+ +  +SG+F  VN +LV ELK+  +WD      L+   GS+     IP+D++ ++
Sbjct: 638 VSNLFKRETLSGEFLQVNGYLVEELKKLGVWDARTREALREASGSVQGFGWIPEDVRALY 697

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRS
Sbjct: 698 RTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 757

Query: 906 RSATSVEKST---LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           R AT + ++                  D ++   SL  P S      CE CQ
Sbjct: 758 RPATRIARAASGRTASAALPAQQAQAPDADAIACSLENPES------CEACQ 803


>gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
 gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
          Length = 798

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 318/829 (38%), Positives = 456/829 (55%), Gaps = 47/829 (5%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           AP AP+ + +  D T        L   + E  + L D     V +   +       E++L
Sbjct: 4   APSAPRAESVSGDTT--EGPGAALLRTLTELTADLPDTDPGRVAAAALRGRSASADEAEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                 ++  LI ++P Y+++ AR L   +  E         Q AT           F  
Sbjct: 62  RGLATEAAAGLISEDPAYSRLAARLLTLAVADEA------AGQGATS----------FAE 105

Query: 259 YIEEGVKARLLHESMMDFDLVYLA-------NDLKYERDFAFEYLGLQILYDRYFLH--I 309
            +  G +  L+ +   +F   + A       + L    D  F + GL+ L+ RY L   I
Sbjct: 106 SVAVGHREGLIADRTAEFVAAHAARLDALVEHALAEGADDRFGFFGLRTLHSRYLLRHPI 165

Query: 310 NGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
               IE PQ F +RVA GLA  ++ +  +     Y L+S   ++ S+PTLFNSGTRHPQ+
Sbjct: 166 TRQVIETPQYFMLRVACGLAEDDSVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQM 225

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PF
Sbjct: 226 SSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPF 285

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD
Sbjct: 286 LKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPD 345

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+RV  +A W+LFSP +V +L DLYG EF+ AY   E     G  K  + + A  L+ 
Sbjct: 346 EFMRRVNADADWSLFSPADVPELVDLYGDEFDAAYVKAEAA---GLAK--KTMPARDLYG 400

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   ++  ETAVCNLGS+
Sbjct: 401 RMMRTLAQTGQGWMTFKDASNRTANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSV 460

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  A+ + D+ +L  T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q 
Sbjct: 461 NLGAFVADGEMDWARLDETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQD 520

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               L +P+ S EA  ++ +  E I   A  AS +LA+  G   ++  +   QGV   D 
Sbjct: 521 VFFKLRLPFDSAEAKALSTKISERIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDH 580

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    E   +   R  WD L+ R+   GMRNS  +AIAPTATIA+I GV + I+P 
Sbjct: 581 Y--------ETERHWPER--WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQ 630

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             NL+ +  +SG+F  VN +LV +LKQ  +WD      L+   GS+     IP ++++++
Sbjct: 631 VSNLFKRETLSGEFLQVNGYLVEDLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELY 690

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRS
Sbjct: 691 RTAWEIPQRGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRS 750

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           R AT + ++          A P   P  +  +  +  S  +   CE CQ
Sbjct: 751 RPATKIARAASGAAAVPAAATPAQLPQ-ALDAEALACSLENPESCEACQ 798


>gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 796

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 314/801 (39%), Positives = 448/801 (55%), Gaps = 57/801 (7%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR L   
Sbjct: 39  ELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAARLLTIG 98

Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +R E  +   T +       H E   L  +    ++        LH   +D  +   A+D
Sbjct: 99  IRAEAASQGVTSFTGSVATGHRE--GLIADRTAAFVR-------LHAERLDALVDTRADD 149

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVE- 341
                   F Y GL+ L+ RY L    +R  +E PQ F +RVA GLA  +  +    V  
Sbjct: 150 -------RFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLAEDDGARSVDEVAA 202

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
            Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+
Sbjct: 203 LYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGI 262

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+E
Sbjct: 263 GLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIE 322

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V  L DL+G+EF+ 
Sbjct: 323 EFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADVPGLVDLWGEEFDA 382

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
           AY   E Q         R + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +   V
Sbjct: 383 AYRAAEAQG-----LARRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQTAEPGHV 437

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           VHSSNLCTEI   +   ETAVCNLGS+NL A    A    D+++L  T+RTAV  LD V+
Sbjct: 438 VHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDETVRTAVTFLDRVV 497

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN +  E+A +SN   R +GLG MG Q  L  L +P+ SPEA  ++    E I   A  
Sbjct: 498 DINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALSTRIAERIMLAAYE 557

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA+  G   +++ +   +GV   D          +  +    R  W  L+ R+  +
Sbjct: 558 TSADLAERSGPLPAWEKTRTARGVLHPDHY--------DTELTWPER--WAALRARIAAV 607

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VNS+LV +LK+  +W
Sbjct: 608 GMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLGVW 667

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D      L+   GS+ +   IP+D+++++ TA+EI    LI+ A+ R  ++DQAQSLNL+
Sbjct: 668 DARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLF 727

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV---TDPNS 933
           L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV    DP +
Sbjct: 728 LETPTIGKLSSMYVHAWKQGLKTTYYLRSRPATRIARAA------ARTTVPVQAGPDPEA 781

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
              SL  P S      CE CQ
Sbjct: 782 VACSLENPES------CEACQ 796


>gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
 gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
          Length = 810

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 452/762 (59%), Gaps = 41/762 (5%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +++ C GL D+   + V     + +YDG++ S+L+     ++ ++    P+YA++ AR  
Sbjct: 22  IKKLCYGLNDMVDAVKVAMRVIEGLYDGVTTSELDNLAAETAASMTVSHPDYAQLAARIA 81

Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           +  L +       E +  +Y      T+ E   +  E +     E +KA          +
Sbjct: 82  ISNLHKNTNKSFSETMNEMYHYVNPRTNQEAPLISDEVY-----EVIKA----------N 126

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
             +L + + Y RDF ++Y G + L   Y L ING  +E PQ   MRV++G+ + + E   
Sbjct: 127 AEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMRVSVGIHMNDLEA-- 184

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
             +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + GI+  L++ A +++ 
Sbjct: 185 -VIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLETW
Sbjct: 244 AGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYLETW 303

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFLDL+KNTG +  R  D+  A W  DLFMKRV ++A WTL  P+E  DL ++YG
Sbjct: 304 HADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTLMCPNECPDLDNVYG 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            EFE  Y +YE +      K  + I A  LW K+L    ETG P++ +KD  N +S Q++
Sbjct: 364 DEFEALYTSYEAKG-----KGRKTIRARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + SSNLCTEI   +S +E AVCNL SI+L     N +F+++ L +  +   R L+ V
Sbjct: 419 LGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELLFTVTKRVTRNLNKV 478

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + +++A+ SN  HR +GLG+ G   A  ++ +P+ S EA ++  E  E + F A+
Sbjct: 479 IDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKKVNQEIFETLYFAAV 538

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS+E+A+E G YS+F+GS   +G F  +    L  ++DE     + R  W  L+K V  
Sbjct: 539 TASMEMAKEEGPYSTFEGSPISKGEFQHN----LWNIKDE---ELSGRWDWASLRKEVMA 591

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+++L  R L
Sbjct: 592 NGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVDRGL 651

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E +  ++  H+GS+ +I+RIP DLK+++ T +E+    +I+ + +R  +IDQ+QSLNL
Sbjct: 652 WNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNL 711

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL
Sbjct: 712 FMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTL 753


>gi|239982207|ref|ZP_04704731.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces albus J1074]
 gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
 gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
          Length = 791

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 304/791 (38%), Positives = 441/791 (55%), Gaps = 44/791 (5%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           L D     V +   +       E++L +    ++  LI ++P Y+++ AR L   +  E 
Sbjct: 36  LPDTDPGRVAAAALRGRNAASDEAELRSLATEAAAGLISEDPAYSRLAARLLTRTIAEEA 95

Query: 233 L---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
                T + +     H E   L  +    ++         H   +D  LV  A D +   
Sbjct: 96  AGQGVTTFTESVATGHRE--GLIADRTAAFVTA-------HAERLDA-LVDPAADDR--- 142

Query: 290 DFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLL 346
              F Y GL+ ++ RY L    +R  IE PQ F +RVA GLA  ++ +        Y L+
Sbjct: 143 ---FGYFGLRTVHSRYLLRHPHTRQVIETPQHFMLRVACGLAEDDSARALDEVASLYRLM 199

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 200 SALSYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELESIYDRYHQVARLSKHAGGIGLAYS 259

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFL   + +  AVNQGG+RKGA   YLETWH DVEEFL+L
Sbjct: 260 RIRARGSLIRGTNGHSNGIVPFLNTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLEL 319

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG++ RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+G  F+ AY   
Sbjct: 320 RDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFSPSDVPELTDLWGDAFDAAYRAA 379

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSN 583
           E    RG  +  R I A  L+ +M+  L +TG+ W+TFKD  N  + Q  +    VHSSN
Sbjct: 380 EA---RGLAR--RTIPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSN 434

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           LCTEI   +   ETAVCNLGS+NL A       D+++L   +RTAV  LD V+DIN +  
Sbjct: 435 LCTEILEVTDDGETAVCNLGSVNLGAFVDGGAIDWERLDEAVRTAVVFLDRVVDINFYPT 494

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A++SN   R +GLG MG Q     L +P+ SPEA  ++    E I   A   S +LA+
Sbjct: 495 EQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAE 554

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + G   ++  +   QGV   D          +LA        W+ L+ RV   GMRN+  
Sbjct: 555 KNGPLPNWDRTRTAQGVLHPD------HYDTDLAWPER----WEALRARVAESGMRNALL 604

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV +LK+  +WD      
Sbjct: 605 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLGVWDARTREA 664

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           L+   GS+     IP++L+ ++ TA+E+    LI+ A+ R  ++DQ+QSLNL+++ P+  
Sbjct: 665 LREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTPFLDQSQSLNLFMETPTIG 724

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           KL  +Y  AW  GLKTTYYLRSR AT + ++      G   A       ++  +  I  S
Sbjct: 725 KLSSMYAYAWKKGLKTTYYLRSRPATRIARA----AGGSAPATATVPAQAAPDAEAIACS 780

Query: 944 CTSDTECEVCQ 954
             +   CE CQ
Sbjct: 781 LENPESCEACQ 791


>gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
 gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
          Length = 790

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 305/798 (38%), Positives = 442/798 (55%), Gaps = 47/798 (5%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR L   
Sbjct: 29  ELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISEDPAYSRLAARLLAIG 88

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND--- 284
           +  E         Q A+           F   +  G +  L+ +   +F   + A     
Sbjct: 89  IVAEAAG------QGASG----------FAASVAVGHREGLIGDRTAEFVATHAARLDAL 132

Query: 285 LKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVE 341
           +  E D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++         
Sbjct: 133 IDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGLAADDSLPAVDEVAS 192

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
            Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+
Sbjct: 193 LYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGI 252

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+E
Sbjct: 253 GIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIE 312

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +  W+LFSP +V +L DL+G+EFE 
Sbjct: 313 EFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPADVPELTDLWGEEFEA 372

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG 577
           AY   E +       + RK + A  L+ +M+  L +TG  W+TFKD  N  + Q  +   
Sbjct: 373 AYRAAEAKG------LARKTMPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGS 426

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           VVHSSNLCTEI   +   ETAVCNLGSINL A   N + D+++L  T+RTAV  LD V+D
Sbjct: 427 VVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDETVRTAVTFLDRVVD 486

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN +   +A  SN   R +GLG MG Q     L +P+ S  A  ++    E I   A  A
Sbjct: 487 INFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVSTRIAERIMLAAYEA 546

Query: 698 SVELAQERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           S +LA++ G   +++ +   +GV  P           D   + RT    W+ L+ R+   
Sbjct: 547 SADLAEKHGPVPAWEKTRTARGVLHP-----------DHFDVERTWPERWEALRARIAKT 595

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  +W
Sbjct: 596 GMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVW 655

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D      L+  +GS+     IP+D++ ++ TA+E+    LI+ A+ R  ++DQ+QSLNL+
Sbjct: 656 DARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLF 715

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           ++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++          + P+    +   
Sbjct: 716 METPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---SAAASAPIPVQQAVPD 772

Query: 937 SLGIPSSCTSDTECEVCQ 954
           +  I  S  +   CE CQ
Sbjct: 773 ADAIACSLENPESCEACQ 790


>gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
 gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
          Length = 790

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/673 (42%), Positives = 401/673 (59%), Gaps = 28/673 (4%)

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346
           D  F Y GL+ LY RY L   I    +E PQ F +RVA GLA  ++          Y L+
Sbjct: 138 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 197

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 198 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 257

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 258 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 317

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+EFE AY   
Sbjct: 318 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 377

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582
           E +       + RK I A  L+ +M+  L +TG  W+TFKD  N  + Q  +   VVHSS
Sbjct: 378 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 431

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI   +   ETAVCNLGSINL A   N   D+++L  T+RTAV  LD V+DIN + 
Sbjct: 432 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 491

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++A  SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA
Sbjct: 492 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLA 551

Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           ++ G   +++ +   +GV  P           D   + RT    W+ L+ R+   GMRNS
Sbjct: 552 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 600

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  +WD    
Sbjct: 601 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 660

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R  ++DQ+QSLNL+++ P+
Sbjct: 661 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 720

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             KL  +Y  AW  GLKTTYYLRSR AT + ++          A P+    S   +  I 
Sbjct: 721 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---PAAEAAPIPVQQSVPDAEAIA 777

Query: 942 SSCTSDTECEVCQ 954
            S  +   CE CQ
Sbjct: 778 CSLENPESCEACQ 790


>gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actG]
 gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actF]
          Length = 767

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/673 (42%), Positives = 401/673 (59%), Gaps = 28/673 (4%)

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346
           D  F Y GL+ LY RY L   I    +E PQ F +RVA GLA  ++          Y L+
Sbjct: 115 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 174

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 175 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 234

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 235 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 294

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+EFE AY   
Sbjct: 295 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 354

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582
           E +       + RK I A  L+ +M+  L +TG  W+TFKD  N  + Q  +   VVHSS
Sbjct: 355 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 408

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI   +   ETAVCNLGSINL A   N   D+++L  T+RTAV  LD V+DIN + 
Sbjct: 409 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 468

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++A  SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA
Sbjct: 469 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLA 528

Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           ++ G   +++ +   +GV  P           D   + RT    W+ L+ R+   GMRNS
Sbjct: 529 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 577

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  +WD    
Sbjct: 578 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 637

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R  ++DQ+QSLNL+++ P+
Sbjct: 638 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 697

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             KL  +Y  AW  GLKTTYYLRSR AT + ++          A P+    S   +  I 
Sbjct: 698 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGS---PAAEAAPIPVQQSVPDAEAIA 754

Query: 942 SSCTSDTECEVCQ 954
            S  +   CE CQ
Sbjct: 755 CSLENPESCEACQ 767


>gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 792

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 295/743 (39%), Positives = 432/743 (58%), Gaps = 40/743 (5%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           L D     V +   +       E++L      ++  LI ++P Y+++ AR L        
Sbjct: 36  LPDTDPGKVAAAALRGRSAAADEAELRELATEAAAGLIAEDPAYSRLAARLL-------- 87

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYER 289
             TV    + A            F   +  G +  L+ +   +F  ++   L   +    
Sbjct: 88  --TVTIADEAAGQGAFS------FSASVAVGHREGLIADRTAEFVALHADRLDATIDPAG 139

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLL 346
           D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++ +    V   Y L+
Sbjct: 140 DDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAEDDSVRALDEVSALYGLM 199

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 200 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGIGLSYS 259

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 260 RIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLEL 319

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+EF+ AY   
Sbjct: 320 RDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLWGEEFDAAY--- 376

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSN 583
            R+A+   +   + + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +    VHSSN
Sbjct: 377 -RKAEAAGL-ARKTMPARDLYGRMMRTLAQTGNGWMTFKDASNRTANQTAEPGHTVHSSN 434

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           LCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  LD V+DIN +  
Sbjct: 435 LCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVRTAVTFLDRVVDINFYPT 494

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA+
Sbjct: 495 EQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRIAERIMLAAYEASADLAE 554

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G   +++ +   +GV   D          ++ +N   R  W  L++R+  +GMRNS  
Sbjct: 555 RNGPLPAWEKTRTARGVLHPDHY--------DVELNWPER--WAALRERIAAVGMRNSLL 604

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELK+  +WD      
Sbjct: 605 LAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKKLGVWDAQTREA 664

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           L+  +GS+     +P ++++++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  
Sbjct: 665 LRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIG 724

Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906
           KL  +Y  AW  GLKTTYYLRSR
Sbjct: 725 KLSSMYAYAWKQGLKTTYYLRSR 747


>gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
 gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
          Length = 808

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 305/798 (38%), Positives = 459/798 (57%), Gaps = 55/798 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V  +    +YDG++  +L+     ++ T+  K P+YA + AR          ++ ++K  
Sbjct: 39  VAKKVITGIYDGVTTIELDNLAAETAATMAIKHPDYAILAARI--------AISNLHKTT 90

Query: 241 QKATHHEMQCLYPEYFCRYIE--EGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEY 295
            K     M+ LY      YI+   G KA L+ +   + +  +   L + + Y+RD+ ++Y
Sbjct: 91  SKVFSKTMKELY-----EYIDPKTGEKAGLISDETHAAIQKNAAVLDSSIIYDRDYNYDY 145

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L ++G  +E PQ   MRVA+G+  ++ +K    +E Y LLS   F  +T
Sbjct: 146 FGFKTLERSYLLKMDGQVVERPQHMLMRVAVGIHGEDVDK---VLETYELLSGKWFTHAT 202

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT  PQLSSCFL T+ DD + GI+  L++ A +++ +GG+G     VR  G++I
Sbjct: 203 PTLFNAGTPKPQLSSCFLLTMQDDSIEGIYDTLKQCAKISQSAGGIGLSIHNVRATGSYI 262

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S GVIP LKV NDTA  V+QGG KRKGA   YLE WH D+ EFLDL+KN G + 
Sbjct: 263 KGTNGTSNGVIPMLKVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLKKNHGKEE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+ DLFMKRV  +  W+LF P+E   LH++YG+EFE  YE YE +     
Sbjct: 323 LRARDLFYAMWLSDLFMKRVENDDTWSLFCPNEAPGLHEVYGEEFEKLYEQYELEG---- 378

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +  + I A  LW K+L    ETG P++ +KD  N +S Q+++G + SSNLCTEI   +S
Sbjct: 379 -RARKVIKAQDLWFKILESQIETGTPYMLYKDAANEKSNQKNLGTIKSSNLCTEIMEYTS 437

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +E AVCNL SI L     + +FD+ KL    +   R L+ +IDIN + +++A+ SN  H
Sbjct: 438 KDEVAVCNLASIALPKFVIDGKFDHQKLYEVTQVVTRNLNRIIDINYYPVKEAENSNLRH 497

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G      +L +P+ S EA  +  +  E I F +++AS+ELAQ+ GAY S+KG
Sbjct: 498 RPIGIGVQGLADTFMMLRMPFDSEEAKGLNKDIFETIYFASMTASMELAQKEGAYESYKG 557

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   +G+F  D  G+  E         + R  W  L+K VK  G RNS  +A  PTA+ +
Sbjct: 558 SPVSEGIFQFDMWGVKPE---------SGRWDWQALRKDVKKHGARNSLLLAPMPTASTS 608

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++  +P   N+Y +  +SG+F VVN  L+N+L + +LW   M + +K  +GS+ N
Sbjct: 609 QILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLVELNLWGGDMENRIKAANGSVQN 668

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I  IP +LK I+ T +EI    +++ A+ R  +I Q+QSLN++++ P+  KL  ++  AW
Sbjct: 669 IPEIPQNLKDIYKTVWEIKQKDVVDMAADRGAFICQSQSLNIHMENPTFGKLTSMHFYAW 728

Query: 894 LMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNA---VPVTDPNSSTHSLGIPS-- 942
             GLKT TYYLR+++A      +VEK   +   GK+N    +  T  ++S H  G  S  
Sbjct: 729 KKGLKTGTYYLRTKAAAKAIQFTVEKKYQEESKGKINGQADLVATTASASAHQNGSVSEE 788

Query: 943 ------SCT-SDTECEVC 953
                 +C+  D +C+ C
Sbjct: 789 YNVEGQNCSIDDPDCDSC 806


>gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
 gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
          Length = 819

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 295/776 (38%), Positives = 450/776 (57%), Gaps = 41/776 (5%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V++ C GL ++   + V     + +YD ++ S+L+      + T+    P+YAK+ AR  
Sbjct: 22  VKKLCYGLNELVDPVKVAMRVIEGLYDNVTTSELDNLAAEIAATMTTSHPDYAKLAARIS 81

Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           +  L +       EV+T +Y+     T  +   L  E +   IE   K            
Sbjct: 82  VSNLHKNTKKTFSEVMTDLYEYVNPRTGEKAPLLSDEVYKVIIENKEK------------ 129

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
              L + + Y RDF+++Y G + L   Y L +NG   E PQ   MRV++G+ + + +   
Sbjct: 130 ---LDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHIDDLDA-- 184

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
            A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + GI+  L++ A +++ 
Sbjct: 185 -AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+E W
Sbjct: 244 AGGIGLSIHNVRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYVEPW 303

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ +FLDL+KN G +  R  D+  A W+PDLFMKRV QN  WTL  P E   L D YG
Sbjct: 304 HADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTLMCPQECPGLFDTYG 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  YE YE      E K  + I A  LW K+     ETG P++ +KD  N +S Q++
Sbjct: 364 EEFEKLYEKYE-----AENKGRKTIKARELWEKITESQIETGTPYMLYKDAANRKSNQKN 418

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + SSNLCTEI   +S +E AVCNL SI L      N+FD+ +L    +   + L+ V
Sbjct: 419 LGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNEFDHKELFKITKRVTKNLNKV 478

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + +++A+ SN  HR +GLG+ G       L +P+ S +A ++  E  E + F A+
Sbjct: 479 IDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDKAKKLNQEIFETLYFAAV 538

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS+ELA+E G YS+FKGS   +G F  +  G    ++DE   + + R  W +L+K+V  
Sbjct: 539 TASMELAKEEGPYSTFKGSPISEGEFQYNLWG----IKDE---DLSGRWDWGKLRKQVMK 591

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L  R+L
Sbjct: 592 EGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSRNL 651

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD+ + + +  ++GS+ +I+ IPDDLK+++ T +E+    +I+ +  R  +IDQ+QSLNL
Sbjct: 652 WDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIIDMSRHRGYFIDQSQSLNL 711

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           +++  +  KL  ++  AW  GLKT  YYLR++SA    K TL+    K   V V++
Sbjct: 712 FMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLEKEKKKEPIVAVSE 767


>gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 792

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 307/826 (37%), Positives = 468/826 (56%), Gaps = 53/826 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESD 197
           + ++  DG   S    ++   +E+ C GL        DV+ K++     + +YDG++ S+
Sbjct: 1   MYVIKRDGRSESVKFDKITARIEKLCYGLNPDLVDPIDVARKVI-----EGLYDGVTTSE 55

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     ++ +L  K P+YA + +R  +  L +  +        K+    M  LY     
Sbjct: 56  LDNLAAETAASLTTKHPDYALLASRIAVSNLHKNTV--------KSFSETMSLLY----- 102

Query: 258 RYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            YI+   G  A L+ + + +    + + L + + Y+RDF+F+Y G + L   Y L +NG 
Sbjct: 103 HYIDPKTGKPAPLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFKTLEKSYLLKLNGK 162

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ  FMRVA+G+   + E     ++ Y+LLS   F  +TPTLFN+GT  PQ+SSCF
Sbjct: 163 IAERPQHLFMRVAVGIHKHDIES---VIKTYDLLSERWFTHATPTLFNAGTPKPQMSSCF 219

Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+ DD + GI+  L++ A +++ +GG+G     VR  GA+I GTNG S G+IP L+V 
Sbjct: 220 LLTMKDDSIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGAYISGTNGTSNGIIPMLRVF 279

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKGA   YLE WH DV +F+DLRKN G +  R  D+  A W+PDLFM
Sbjct: 280 NDTARYVDQGGGKRKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFM 339

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  W+LFSPDE   L + +G+ FE  YE YER+    +I     + A  LW  +L
Sbjct: 340 KRVEENGEWSLFSPDEAPGLAECHGEAFEKLYEQYEREGRARKI-----VKAQDLWFAIL 394

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +
Sbjct: 395 DAQIETGTPYLLYKDAANGKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRY 454

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N +FD+ KL          L+ +ID N + +++A+ SN  HR +GLG+ G      L+
Sbjct: 455 VDNGEFDHQKLFDITYQVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILM 514

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S  A ++  +  E I F A++AS +LA + G Y SFKGS   QG F  D    L 
Sbjct: 515 RMPFESEAAKQLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFD----LW 570

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            V+ +     + R  W+ L+K +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y
Sbjct: 571 NVKPD-----SGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 625

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F +VN  L+ +L +  LW+  M + +   +GSI +I  IP D+K+++ T +E
Sbjct: 626 TRRVLSGEFVIVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVWE 685

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I+ A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++AT
Sbjct: 686 IKMRNIIDMAADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAAT 745

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS--CTSDTECEVC 953
              K T++   GK N  PV      +    IP+   C+ +  C  C
Sbjct: 746 QAVKFTVENQAGK-NMEPVIPAKIESVPDDIPTGAVCSMEEGCITC 790


>gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 794

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 296/781 (37%), Positives = 449/781 (57%), Gaps = 40/781 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   S    ++   +E  C GL    V    V       +YDG++  +L+     
Sbjct: 3   VLKRDGRRESVKFDKITSRIERLCYGLDMNYVDPTSVAKRVIDGLYDGVTTEELDHLAAE 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--E 262
           ++ ++  K P+YA + AR          ++ ++KK  K+  + M+ LY      Y++   
Sbjct: 63  TAASMTTKHPDYATLAARI--------AVSNLHKKTSKSFANTMKRLYT-----YVDPKT 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++   + +F   +   L + + Y+RD+ ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GENASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV+ G+   + +    A+E YNL+S   F  +TPTLFNSGT  PQLSSCFL T  DD
Sbjct: 170 MLMRVSCGIHSGDIDA---AIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDD 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIDGIYETLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A WI DLFMKRV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D YGK+FE  YE YE++      +  + I A  LW  +L    ETG
Sbjct: 347 DWSLFCPHEAPGLADCYGKDFEALYEKYEKEG-----RARKTIKAQELWFAILEAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S Q+++G + SSNLCTEI   +S EE AVCNL S+ L     N +FD
Sbjct: 402 TPYMLYKDAANRKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL      A + L+ +ID+N + + +A++SN  HR IGLG+ G   A  LL +P+ S 
Sbjct: 462 HQKLYDVTYVATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESD 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A++AS +LA++ G Y +FKGS   +G+F  D  G+         
Sbjct: 522 EAKQLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPA------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W+ LK+ VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L + +LWD+ M + L   +GS+ NI  IP ++K ++ TA+EI    LI
Sbjct: 633 EFVVVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLI 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + ++ R  +I Q+QSLN+++ E +  KL  ++  AW  GLKT  YYLR++SA +  + T+
Sbjct: 693 DMSADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTV 752

Query: 917 K 917
           +
Sbjct: 753 E 753


>gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 790

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/676 (42%), Positives = 401/676 (59%), Gaps = 34/676 (5%)

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLL 346
           D  F Y GL+ LY RY L   I    +E PQ F +RVA GLA  ++          Y L+
Sbjct: 138 DDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVDEVASLYRLM 197

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++
Sbjct: 198 SRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKHAGGIGIAYS 257

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+L
Sbjct: 258 RIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWHSDIEEFLEL 317

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           R NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+EFE AY   
Sbjct: 318 RDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGEEFEAAYRAA 377

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582
           E +       + RK I A  L+ +M+  L +TG  W+TFKD  N  + Q  +   VVHSS
Sbjct: 378 EAKG------LARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAEPGSVVHSS 431

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI   +   ETAVCNLGSINL A   N   D+++L  T+RTAV  LD V+DIN + 
Sbjct: 432 NLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDRVVDINFYP 491

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++A  SN   R +GLG MG Q     L +P+ S EA  ++    E I   A  ASV+LA
Sbjct: 492 TDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASVDLA 551

Query: 703 QERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           ++ G   +++ +   +GV  P           D   + RT    W+ L+ R+   GMRNS
Sbjct: 552 EKHGPVPAWEKTRTARGVLHP-----------DHYDVERTWPERWEALRARIARSGMRNS 600

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  +WD    
Sbjct: 601 LLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLGVWDARTR 660

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R  ++DQ+QSLNL+++ P+
Sbjct: 661 EALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLNLFMETPT 720

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSL 938
             KL  +Y  AW  GLKTTYYLRSR AT + ++                V D  +   SL
Sbjct: 721 IGKLSSMYAHAWNKGLKTTYYLRSRPATRIARAAGAPAAEAAPIPVQQSVPDAEAIACSL 780

Query: 939 GIPSSCTSDTECEVCQ 954
             P S      CE CQ
Sbjct: 781 ENPES------CEACQ 790


>gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
 gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
          Length = 792

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 312/801 (38%), Positives = 444/801 (55%), Gaps = 61/801 (7%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
           +GL  V  + + ++T +          L+  L  ++   I +EP+Y+K+ AR L   + R
Sbjct: 36  AGLDGVELERLFAQTRERAPADADRETLDELLARTAVGWIVEEPDYSKLAARILAGAIAR 95

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN---DLKY 287
           E  +      Q  T           F   +E   +  L +   ++F   + A     L  
Sbjct: 96  EAAS------QGVTS----------FLNSVETLHRLGLGNARALNFARAHAATLEAALDR 139

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           E D  FEY GL+ ++DRY +    +R  +E PQ FFMRVA  LA+   E    AV  Y L
Sbjct: 140 EGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAVDPDE----AVALYGL 195

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDW 404
            S   ++ S+PTLFN+GT   QLSSCFL   P D L  I+    + A L+K+SGG+G  +
Sbjct: 196 FSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKLSKFSGGIGLAY 255

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR  G+ I  TNG S G++P+LK  + +  AVNQGG+RKGA C YLETWH D+ EFL+
Sbjct: 256 HRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLETWHADLPEFLE 315

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           LR NTG++  R H++N ANWIPD FM+RV  + GW+LF P  V    DLYG+ F  AY  
Sbjct: 316 LRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDLYGEAFTRAYV- 374

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582
              +A+R  + V   + A  L+ +M+  L +TG+ W+ FKD CN    Q  +    VH S
Sbjct: 375 ---EAERAGLAVA-TLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQTARPGRTVHLS 430

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLD 633
           NLCTEI   +S EETAVCNLGSINL  H          A+ + D+ KL  ++  AVR LD
Sbjct: 431 NLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLGRSVTLAVRALD 490

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            VID+N + +E A KSN   R +GLG MG    L  L + + SP A E+A    E + FH
Sbjct: 491 RVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAARELARRVAEHVYFH 550

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+  S +LA++ G + +F  +    G    D  G          +     LPWD L++ V
Sbjct: 551 ALRTSCDLARQHGPHPAFPETRAADGQLQFDLWG----------VEPGEDLPWDTLRRDV 600

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            + G+RNS  +A+APTATIA+I G  + I+P+  NL  +  +SG+F  VN +L++EL++ 
Sbjct: 601 ASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYLIDELRRL 660

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LWDEAM + LK  +GS+  I R+P+ L++   TA+E+    LI+ A+ R  +IDQ+QSL
Sbjct: 661 GLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPFIDQSQSL 720

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NL+++ P   +L  +Y  AW  GLKTTYYLRSR A+ + K+T+   + K        P  
Sbjct: 721 NLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPASGIAKATVDPANAK--------PKQ 772

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
            +    +  S  +   CE CQ
Sbjct: 773 RSAE-ALACSLENPEACEACQ 792


>gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 806

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 295/771 (38%), Positives = 452/771 (58%), Gaps = 37/771 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +++ C GL D+   + V     + +YDG++ S+L+     ++ ++    P+YA++ AR  
Sbjct: 22  IKKLCYGLNDLVDAVKVAMRVIEGLYDGVATSELDNLAAETAASMTIAHPDYAQLAARI- 80

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYL 281
                   ++ ++    K+    M  +Y     R    G +A LL E   +++  +  +L
Sbjct: 81  -------AISNLHSNTNKSFSETMNEMYHYVNPR---NGQEAPLLSEEVHTVIQENAAFL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RDF ++Y G + L   Y L ING  +E PQ   MRV++G+ L +    K  +E
Sbjct: 131 NSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLNDL---KSVIE 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  + DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+ETWH D+
Sbjct: 248 GLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIETWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLDL+KNTG +  R  D+  A W  DLFMKRV +N  WTL  P+E   L+D+YG+EFE
Sbjct: 308 FEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTLMCPNECPGLYDVYGEEFE 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y NYE+ A +G     + I A  LW K+L    ETG P++ +KD  N +S Q+++G +
Sbjct: 368 KMYTNYEK-AGKGR----KTIKAHELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLCTEI   +S +E AVCNL S++L     N  F++D L +  +   R L+ VID N
Sbjct: 423 RSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNHDLLFTVTKRVTRNLNKVIDRN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++ + SN  HR IGLG+ G   A  +L +P+ S +A ++  E  E + F A++AS+
Sbjct: 483 YYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKKLNQEIFETLYFAAVTASM 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A E G YS+F GS   QG F  +  GL    +DE     + R  W  L+K V   G+R
Sbjct: 543 EMAIEEGPYSTFAGSPISQGEFQYNLWGL----KDE---ELSGRWDWANLRKEVMKNGVR 595

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+N+L +R LW E 
Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVERGLWTED 655

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           +   L   +GS+  +  IP DLK+++ T +E+    +I+ + +R  ++DQ+QSLNL++ +
Sbjct: 656 LKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQSQSLNLFMQD 714

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            +  KL  ++  AW  GLKT  YYLR+++A    K TL   D K  A P+T
Sbjct: 715 ANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNN-DKK--AEPIT 762


>gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
 gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
          Length = 797

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 293/801 (36%), Positives = 463/801 (57%), Gaps = 40/801 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +++ C GL ++   + V     + +YDG+S S+L+     ++ ++    P+YA++ AR  
Sbjct: 22  IKKLCYGLNELVDPVKVAMRVIEGLYDGVSTSELDNLAAETAASMTIAHPDYAQLAARV- 80

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281
                   ++ ++   +K+    M+ +Y     R    G  A L+ + +      +  +L
Sbjct: 81  -------AISNLHSNTKKSFSETMKDMYNYVNPR---NGQDAPLIADDVYKVIQENAAFL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RDF ++Y G + L   Y L ING  +E PQ   MRV++G+ L +    K  +E
Sbjct: 131 DSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMRVSVGIHLDDL---KSVIE 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  + DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+ETWH D+
Sbjct: 248 GLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYIETWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KNTG +  R  D+  A W  DLFMKRV +++ WTL  P+E   L+D+YG EFE
Sbjct: 308 FDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTLMCPNECPGLYDVYGDEFE 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y +YE    RG+ +  + I A  LW K+L    ETG P++ +KD  N +S  +++G +
Sbjct: 368 ALYTDYEF---RGKGR--KTIRARELWEKILESQIETGTPYMLYKDAANRKSNHKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLCTEI   +S +E AVCNL SI+L     N +FD+  L +  +   R L+ VID N
Sbjct: 423 RSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDHQALYNVTKRVTRNLNKVIDRN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA ++  E  E + F A++AS+
Sbjct: 483 YYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAVTASM 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A+E G YS+F+GS   QG F  +  G+    +DE     + R  W  L+K V   G+R
Sbjct: 543 EMAKEEGPYSTFEGSPMSQGEFQYNMWGM----KDE---ELSGRWDWASLRKEVVEHGVR 595

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L +  LW+E 
Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVKLGLWNED 655

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           +  ++  H+GS+ NI++IP DLK ++ T +E+    +I+ + +R  +IDQ+QSLNL++ +
Sbjct: 656 LKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQD 715

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            +  KL  ++  AW  GLKT  YYLR+++A    K TL   D K    P     +   S+
Sbjct: 716 ANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNN-DKKEETAPSLVQETEAISV 774

Query: 939 G------IPSSCTSDTECEVC 953
                  + +      +CE+C
Sbjct: 775 EDYKAMLLKAQAADPEDCEMC 795


>gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           acinonychis str. Sheeba]
 gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 788

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 322/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG+EFE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------------SE 595
           FKD  N  +P  H G++ SSNLCTEI  N++                           S 
Sbjct: 404 FKDNANRCNPNAHTGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463

Query: 596 ETAVCN-LGSINLLAHFANNQFDYDKLASTIRTAV------------------------- 629
            T   N L S ++L       +   K+A   +TAV                         
Sbjct: 464 ITKCANKLTSTDILK--GKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  SV LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI +A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIRAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRVENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain
           [Streptomyces microflavus]
          Length = 793

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/753 (39%), Positives = 430/753 (57%), Gaps = 44/753 (5%)

Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           I+ E  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ AR L
Sbjct: 31  ILTELTADLPDTDPGRVAAAALRGRHPGSDTAELRELATEAAAGLIAEDPAYSRLAARLL 90

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---L 281
              +  E         Q A            F   +  G +  L+ E   +F  ++   L
Sbjct: 91  TLTIAEEA------AGQGAVS----------FSESVATGHREGLIAERTAEFAALHADRL 134

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338
            + +    D  F Y GL+ LY RY L   I    IE PQ F + VA GLA  ++ +    
Sbjct: 135 DSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAEDDSVRALDE 194

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 195 VTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 254

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 255 GGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 314

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DLYG E
Sbjct: 315 DIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLYGAE 374

Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--Q 574
           F+ AY   E +       + RK + A  L+ +M+  L +TG+ W+TFKD  N  + Q  +
Sbjct: 375 FDAAYVAAEAKG------LARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQTAE 428

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVL 632
              VVHSSNLCTEI   +   ETAVCNLGS+ L A    A+ + D+++L +T+RTAV  L
Sbjct: 429 PGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDATVRTAVTFL 488

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 489 DRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRISERIML 548

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   ++  +   +GV   D          ++ +    R  W  L+ R
Sbjct: 549 AAYEASADLAERNGPLPAWDKTRTARGVLHHDHY--------DVELTWPER--WAALRAR 598

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+
Sbjct: 599 IAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKR 658

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GS+ +   +P + + ++ TA+EI    LI+ A+ R  ++DQAQS
Sbjct: 659 LGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQAQS 718

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           LNL+++ P+  KL  +Y  AW  GLKTTYYLRS
Sbjct: 719 LNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRS 751


>gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
 gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
          Length = 798

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 319/775 (41%), Positives = 436/775 (56%), Gaps = 120/775 (15%)

Query: 194 SESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           S  DL T+LI  +   I+ + PN++ V AR  LE L ++V       P +          
Sbjct: 64  STQDLFTSLIKMAVDRIDVDAPNWSFVAARLFLEDLYQKVSGFSGYLPLRV--------- 114

Query: 253 PEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
                 Y+E G  K R++      FDL  L + LK ERD+ F YLG++ LYDRY L    
Sbjct: 115 ------YLERGESKGRIVRGFKEKFDLELLDSALKPERDWQFNYLGIKTLYDRYLLKDES 168

Query: 312 SR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           +  IE+PQ  FM +AM LA  E++   RA+EFY +LS F  MC+TPTL N+ T + QLSS
Sbjct: 169 NHPIELPQHMFMAIAMFLAQNESDPNARALEFYGVLSRFELMCATPTLANARTPNHQLSS 228

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C++ + PD++ GIF + ++ A+L+KY GG+G D++ VR LG+ I G    S GVIPFLK+
Sbjct: 229 CYIGSTPDNIEGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSFIDGHKSASAGVIPFLKI 288

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           AND AVAV+Q G RKGA+  YLE WH+D+ EF+DLRKN+GD+RRR HD+  A WI DLFM
Sbjct: 289 ANDVAVAVDQLGTRKGAIAVYLEIWHMDILEFIDLRKNSGDERRRAHDLFPALWICDLFM 348

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  WTLF P    DL   +G EFE  Y  YE+ +      V  +I A  LW+K+L
Sbjct: 349 QRVEADQEWTLFDPYRCQDLTQCFGAEFEAKYLAYEQDSHM----VKHRIKARDLWKKIL 404

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
           T  FETG P++ FKD  N  +P  HVG++ SSNLCTEI  N+SS                
Sbjct: 405 TNYFETGLPFLGFKDNANRANPNGHVGMIRSSNLCTEIYQNTSSSHYKMQIDFTDGSREF 464

Query: 595 --EETAVC--------------------------------------NLGSINLLAHFANN 614
             E   VC                                      NL S+NL     N+
Sbjct: 465 FEELEEVCTDTGITKRANKLSSNDSLGGKKIFMASKVAEEGMVAVCNLASLNLSK--INS 522

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           Q D +++   +  AVR+LDNVID+N + I KAK++N   RAIGLG+MG    L    I +
Sbjct: 523 QQDLERV---VPIAVRMLDNVIDLNFYPISKAKETNLKSRAIGLGVMGEAQMLAEARIKW 579

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S E     D  +E +S+ AI AS +LA ERG+Y+ F+GS W QG+FPID I    EV+ 
Sbjct: 580 GSAEHALKMDFLLEKMSYEAIKASSQLAIERGSYAYFEGSAWSQGIFPIDYIK--QEVK- 636

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           E++ ++  R  W  LKK+VK  G+RN   MAIAPT++I+ + G +Q+I+P YQ  +++ N
Sbjct: 637 EISPHK-PRCDWKSLKKKVKEQGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWLEEN 695

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG   VV   L                          ++E  P      + +A++ID  
Sbjct: 696 LSGLIPVVVPSL--------------------------SLETWP-----FYTSAYDIDAK 724

Query: 855 WLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +I+ A+ RQKWIDQ QSLNL+L   + SGK L  IY  AW +GLK+TYYLR++S
Sbjct: 725 DMIKLAAVRQKWIDQGQSLNLFLRPKKASGKLLHEIYYLAWKLGLKSTYYLRTQS 779


>gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
           NBC37-1]
 gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp.
           NBC37-1]
          Length = 789

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/823 (37%), Positives = 455/823 (55%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +G + + +  +++     A  GL DVS   +  +      D ++  +++T LI 
Sbjct: 2   VRVVKRNGRVETLDVSKIQKYTSAAVEGLDDVSQSELEVDAKLQFRDMITSEEIQTTLIK 61

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+   PN+  V AR  L           Y    KAT         EYF R  +EG
Sbjct: 62  TAVDKIDIDRPNWTFVAARLFL-----------YDIYHKATGFTGYNHLREYFERGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R++      +DL  L + +K ERD  F YLGL+ LYDRY L   NG  IE+PQ  FM
Sbjct: 111 ---RIVLGLKDKYDLDDLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 GVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEPWHVDVRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561
            P EV++L +LYG+EFE  Y   E      +  + R+ ISA  LW+++L   FETG+P++
Sbjct: 348 DPFEVTELTELYGEEFEKRYVELEHS----DADITREVISAKGLWKEILRSYFETGNPFL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------------- 592
           TFKD  N  +P +HVG++ SSNLCTEI  N+                             
Sbjct: 404 TFKDAANRANPNKHVGIIRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDN 463

Query: 593 -----SSEETAVCNLGS-----------------INLLAHFANNQFDYDKLASTIRTAVR 630
                + + TA+ +LG                   NL +   +     + +A  + TAVR
Sbjct: 464 GTTKPAKKVTALDSLGGKQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVR 523

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + + K K++N   R+IGLG+MG    L    I + S +     DE ME +
Sbjct: 524 MLDNVIDLNFYPLAKVKRTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESV 583

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDEL 749
           S++AI AS  LA E+G Y +F GS W +G+FPID     A ++ D   +   S   W  L
Sbjct: 584 SYYAIEASSNLALEKGKYPTFDGSDWSKGIFPIDKANENACKLVDRGGLFGYSH-DWTAL 642

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VKT GMRN   MA+APT++I+ + G +Q+I+P Y+  + + N+SG   V        
Sbjct: 643 REKVKTDGMRNGYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVTAP----- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                     ++  D  + +  A+++D   LI++ + RQKWIDQ
Sbjct: 698 --------------------------KLSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQ 731

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SGK L+ IY  AW  GLK+TYYLRS+S  S
Sbjct: 732 GQSLNIFITLDKASGKYLNEIYMNAWKFGLKSTYYLRSQSPES 774


>gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma
           mansoni]
 gi|238657529|emb|CAZ28603.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Schistosoma mansoni]
          Length = 837

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/792 (36%), Positives = 457/792 (57%), Gaps = 45/792 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           K+ ++  DG   + + +++   +   C GL +  +  + V       +Y G++  +L+  
Sbjct: 16  KIYVVKRDGRNEAIHCEKITKRIRAMCYGLNESYIDVEAVTKRVVSGLYPGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +  ++I K   YA + AR  +  L +E            T      +  + +C YI 
Sbjct: 76  AAETCASMITKHHEYAILAARLAVSNLHKE------------TKSRFSDVVEDLYC-YIN 122

Query: 262 EGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              K  + L+ +S+ DF   +   L + + Y+RD+ + Y G + L   Y L ING   E 
Sbjct: 123 PRTKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFKTLERSYLLKINGKVHER 182

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+   + +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+
Sbjct: 183 PQHMLMRVSIGIHTSDIDS---AIETYNLMSEKWFTHASPTLFNAGTPKPQLSSCFLITM 239

Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            DD + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+V N TA
Sbjct: 240 KDDSIEGIYDTLKECAVISKNAGGIGLNVHNIRSLGTYIAGTNGESNGIVPMLRVFNSTA 299

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDLFM+RV 
Sbjct: 300 RYVDQGGNKRPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVE 359

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTL  P E   L +++G++F+  YE YER+  RG     + + A  LW  ++    
Sbjct: 360 SNDKWTLMDPHECPGLPEVWGEDFDTLYEKYEREG-RGR----QTVKAQELWYAIIECQI 414

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG+P++ +KD CN +S  QH+G +  SNLCTEI   SS +ETAVCNL SI+L   F N 
Sbjct: 415 ETGNPFMLYKDSCNRKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISL-GKFVNR 473

Query: 615 Q---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+ KL    +   R L+ VID+  + +E+A++SN  HR IG+G+ G   A  LL 
Sbjct: 474 DNLTFDFAKLQEVTKVVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADAFCLLR 533

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            P+ SPEA ++     E + F ++ AS +LA ++G Y S++GS   +G+   D  G+   
Sbjct: 534 YPFDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMWGV--- 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D   +++ S L W  L+ R+   G+RNS  +A  PTA+ + I G ++S +P   N++ 
Sbjct: 591 --DTEELSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFTSNVFS 648

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN +L+++L + +LW E + + +  + GSI +I+ IP +LK ++ T +EI
Sbjct: 649 RRVLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYKTVWEI 708

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT- 909
               +I+ A+ R  +IDQ+QSLNL+L +P+  K+  ++  AW  GLKT  YYLR+R A  
Sbjct: 709 SQKKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRTRPAAD 768

Query: 910 ----SVEKSTLK 917
               SV+K+ L+
Sbjct: 769 PIKFSVDKTILR 780


>gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus]
 gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus]
          Length = 790

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/762 (38%), Positives = 445/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M  LY      YI    G  + ++ +  +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMDDLY-----NYINPHNGKHSPMISKETLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L IN    E PQ   MRVA+G+   + +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHKNDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  P+LSSCFL  + DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V R + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL SI L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+++G Y +++GS   +G+   D   +            +    W  LK+++  
Sbjct: 541 EASCELAEQQGPYETYEGSPVSKGILQYDMWNVTP----------SDLWDWKALKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +R L
Sbjct: 591 YGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +  H+GSI NI  IP DLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 752


>gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 35A]
          Length = 788

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 321/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL DLYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTDLYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607
           FKD  N  +P  H G++ SSNLCTEI  N++     +      GSI            N 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTDNH 463

Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631
           +   AN     D           K+A   +TAV                         R+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
               W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus]
 gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus]
 gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus]
 gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus]
 gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus]
 gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus]
          Length = 792

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++  S +D  +   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase, subunit alpha [Weeksella
           virosa DSM 16922]
 gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella
           virosa DSM 16922]
          Length = 779

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 298/782 (38%), Positives = 447/782 (57%), Gaps = 52/782 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +  + +YD ++ ++L+     ++ T     P++A + AR  +  L +  L +  K  
Sbjct: 39  IAKKVIQGIYDNVTTTELDNLAAETAATYTTVHPDFAVLAARISVSNLHKNTLKSFSKTA 98

Query: 241 QKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEY 295
           +         LY      YI+     +A LL E   D    +   + + + Y+RD+ F+Y
Sbjct: 99  K--------LLYD-----YIDPVTNTRAPLLSEETYDIIRNNADEIDSSIIYDRDYNFDY 145

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y +  NG   E PQ  FMRVA+G+  ++    K A+E YNL+S   F+ +T
Sbjct: 146 FGFKTLERSYLIRTNGKVTERPQHLFMRVALGIHKQDI---KAAIETYNLMSEKWFIHAT 202

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFNSGT  PQ+SSCFL ++ +D + GIF  L+  A++++ +GG+G     VR  G++I
Sbjct: 203 PTLFNSGTPKPQMSSCFLLSMTEDSIVGIFDTLKRCALISQSAGGIGLSIHNVRATGSYI 262

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GT G S G+IP L+V NDTA  V+QGG KRKGA+  YLE WH D+ +FL+LRKN G + 
Sbjct: 263 KGTGGISNGIIPMLRVYNDTARYVDQGGGKRKGAIAVYLEPWHADIFDFLNLRKNHGKEE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A WIPDLFM+RV +NA W+LF P+E   L+D+YG  FE  Y++YE       
Sbjct: 323 MRARDLFPALWIPDLFMQRVEENADWSLFDPNEAPGLYDVYGSSFEELYQHYENDG---- 378

Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +FRK + A  LW  +L    ETG P++ +KD  N +S Q+++GV+ SSNLCTEI   +
Sbjct: 379 --IFRKKVKARELWNAILEAQIETGTPYMCYKDAANEKSNQKNIGVIRSSNLCTEIMEYT 436

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           S++E AVCNL S+ L  + + N FD+ KL    +   R L+ VID N + + + + SN  
Sbjct: 437 SADEVAVCNLASLALPRYVSENGFDFQKLYEVTKIVTRNLNKVIDGNYYPVPETENSNFK 496

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR IGLG+ G      LL +P+ S +A ++  +  E I + A+ +S+ELA+E GAY SFK
Sbjct: 497 HRPIGLGVQGLADVFLLLRMPFESEKARQLNKDIFETIYYAAMESSMELAKEEGAYESFK 556

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS   +G F  D    L  V+       + R  W  L+K V   G+RNS  +A  PTA+ 
Sbjct: 557 GSPLSEGKFQFD----LWNVQP------SDRWDWKGLRKNVMEFGVRNSLLVAPMPTAST 606

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G ++  +P   N+Y +  +SG+F VVN  L+ +L + +LWD  M + L   +GS+ 
Sbjct: 607 SQILGNNECFEPYTSNIYNRRVLSGEFVVVNKHLIKDLIELNLWDARMKNKLIAENGSVQ 666

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           NIE IP +LK+++ T +EI    +I+ A+ R  +I Q+QSLNL++ EP+  KL  ++  A
Sbjct: 667 NIEEIPANLKELYKTVWEIKQKTIIDMAADRGAFICQSQSLNLFMAEPNMAKLTSMHFYA 726

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           W  GLKT  YYLR+++A    K T++ V            +S    + I  S  +  EC 
Sbjct: 727 WKSGLKTGMYYLRTKAAADAIKFTVEKVQ-----------SSEDKQVDISCSLDNPDECI 775

Query: 952 VC 953
           VC
Sbjct: 776 VC 777


>gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 820

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 297/785 (37%), Positives = 449/785 (57%), Gaps = 46/785 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   S    ++   +E  C GL    V    V  +    +YDG++ S+L+T    
Sbjct: 3   VVKRDGRRESVKFDKITARIERLCYGLDPYFVQPVEVAMKVVAGIYDGVTTSELDTLAAE 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-- 262
           ++ ++  K P+YA + AR  +  L +  L        K+    M+ LY     +Y++   
Sbjct: 63  TAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSGTMKLLY-----QYVDPKT 109

Query: 263 GVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ +    ++  +   L + + Y+RDF +++ G + L   Y + +NG  +E PQ 
Sbjct: 110 GENAALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRVA+G+  +  EK   A+E YNLLS   F  +TPTLFN+GT  PQLSSCFL T+ DD
Sbjct: 170 MLMRVAVGIHGENIEK---AIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDD 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+ EFL+L+KN G +  R  D+  A W PDLFMKRV  NA
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D YG++FE  Y  YE      E K  + I A  LW ++L    ETG
Sbjct: 347 DWSLFCPHECPGLADTYGEDFERLYTKYE-----AEGKARKTIPAQELWFQILESQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI  L  F N +  
Sbjct: 402 TPYMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASI-ALPKFVNTEGP 460

Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+ KL    +   R L+ +IDIN + + +A+ SN  HR IGLG+ G   A  L+  
Sbjct: 461 APSFDFQKLYEVTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRF 520

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA ++  +  E + F A+  S+ELA+E G YSSF+GS   +G+F  D   +  + 
Sbjct: 521 PFDSEEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD- 579

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   +    W++L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 580 --------SGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSR 631

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L +  LW++ M + L   +GS+  I  IP+DLK ++ TA+EI 
Sbjct: 632 RVLSGEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIK 691

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ ++ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YYLR+++A   
Sbjct: 692 QKSIIDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADA 751

Query: 912 EKSTL 916
            K T+
Sbjct: 752 VKFTV 756


>gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus]
          Length = 762

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++  S +D  +   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus]
          Length = 792

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++  S +D  +   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
 gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
          Length = 825

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 299/771 (38%), Positives = 445/771 (57%), Gaps = 35/771 (4%)

Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL ++   I +S    + +YDG++ S+L+      S T+    P++AK+ AR  
Sbjct: 22  VRKLCYGLNELVDPIKVSMRVIEGLYDGVTTSELDNLAAEISATMTTTHPDFAKLAARIS 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281
           +  L        +K  +K+    M+ LY EY       G K+ LL + +      +  +L
Sbjct: 82  VSNL--------HKNTKKSFADTMKDLY-EYVNP--RNGKKSPLLSDEVFKVISENAAFL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RDF ++Y G + L   Y L ING   E PQ   MRV++G+ L + E     VE
Sbjct: 131 DSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSVGIHLDDLEA---VVE 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y L+S   F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAQISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+E WH D+
Sbjct: 248 GLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGSFAIYVEPWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLDL+KN G +  R  D+  A WIPDLFM+RV  N  WTL  P+E  DL   + + FE
Sbjct: 308 YEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTLMCPNECPDLFKHHSEVFE 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y  YE      E K  + + A  LW K+L    ETG P++ +KD  N +S Q+++G +
Sbjct: 368 TMYLKYE-----AENKGRKTVKARDLWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L    +   R L+ VID N
Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTRNLNKVIDRN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++A+ SN  HR IGLG+ G   A  +L +P+ S  A  +  E  E + F A++AS+
Sbjct: 483 YYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKALNQEIFETLYFAAVTASM 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A+E G YSS++GS   +G F  +  G    ++DE     + R  WD+L+K VK  G+R
Sbjct: 543 EMAKEEGPYSSYEGSPISEGEFQYNLWG----IKDE---ELSGRWDWDKLRKEVKKNGVR 595

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    LW+E+
Sbjct: 596 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVHLGLWNES 655

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           +  +L   +GSI +I+ IP D+K+++ T +E+    +I+ + +R  +IDQ+QSLNL+++ 
Sbjct: 656 LKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLFMEG 715

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            +  KL  ++  AW  GLKT  YYLR++SA    K TL     K   VPV+
Sbjct: 716 ANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTKKK--EVPVS 764


>gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895]
 gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895]
          Length = 890

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/804 (36%), Positives = 451/804 (56%), Gaps = 51/804 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL  + V +  +       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPKHVDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++            T    Q +   Y     + G+ + ++ + + +  + +   
Sbjct: 82  AISNLHKQT-----------TKQFSQVVSDLYHYTNPKNGLHSPMISDEVYEIVMAHKDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L I+G   E PQ   MRVA+G+  K+    K+A+
Sbjct: 131 LNSAIVYDRDFQYNYFGFKTLERSYLLRIDGKVAERPQHMVMRVAVGIHGKDI---KKAI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + GI+  L+E AM++K +GG
Sbjct: 188 ETYNLMSMRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVYNNTARYVDQGGNKRPGAFAIYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +F+D+RKN G +  R  D+  A W+PDLFM+RV +N  WTLFSP E   L D++G+EF
Sbjct: 308 VFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWTLFSPSEAPGLSDVWGEEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE Y R+  RG     + I A  LW  +L    ETG P+I +KD CN +S Q+++G 
Sbjct: 368 EELYERYVREG-RGR----KTIKAQKLWYAILEAQTETGTPFILYKDACNRKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVL 632
           + SSNLC EI   SS EETAVCNL SI L A  A         +D+DKL    +   R L
Sbjct: 423 IKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADGKTQWYDFDKLHEIAKVVTRNL 482

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID N + +E AK+SN  HR I LG+ G   A  +L IP+ SP+A E+  +  E +  
Sbjct: 483 NRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILRIPFDSPQAKELNSQIFETLYH 542

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKK 751
            A  AS+ELA E G Y SFKGS   QG+   D           +  ++ S +  WD LK 
Sbjct: 543 AACEASMELAIEEGPYESFKGSPASQGILQFD-----------MWNHKPSGMWDWDALKA 591

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L 
Sbjct: 592 KIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLV 651

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
              +WD++M S +   +GSI  +  IP +LK ++ T +E+    +I+ A+ R  ++DQ+Q
Sbjct: 652 DLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQKTIIDMAADRGAFVDQSQ 711

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           SLN+++  P+  +L  ++   W  GLKT  YYLR+++A++  + T+     +  A  V D
Sbjct: 712 SLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTVDKAVAEQAANNVAD 771

Query: 931 ------PNSSTHSLGIPSSCTSDT 948
                 P    H++G+ ++  SD+
Sbjct: 772 LSRLHRPRYVPHAVGVSAAPVSDS 795


>gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818]
          Length = 779

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 295/735 (40%), Positives = 430/735 (58%), Gaps = 37/735 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     ++ +   K P+YA + AR  +  L + +    +     A HH +
Sbjct: 47  VYTGVTTVELDQLAAETAASFTTKHPDYAILAARIAVSNLHK-MTHKQFSDVIDALHHYV 105

Query: 249 QCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
                       E G  A L+    +E +M    VY ++ + +ERDF F + G + L   
Sbjct: 106 NP----------ETGRPAPLISKETYEQVMANKEVYNSH-IIFERDFNFNFFGFKTLERS 154

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L +NG   E PQ  FMRVA+G+  ++ +    A+E YN +S   F  ++PTLFNSGT 
Sbjct: 155 YLLKMNGKVAERPQHMFMRVAIGMHGEDVDA---AIETYNYMSEGFFTHASPTLFNSGTP 211

Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL T+ DD + GI+  L+  AM++K +GG+G     +R  G++I GTNG S G
Sbjct: 212 IPQLSSCFLLTMKDDSIEGIYDTLKTCAMISKTAGGIGLSVHNIRASGSYIAGTNGHSNG 271

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QGG KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A
Sbjct: 272 LVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFA 331

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+PDLFMKRV  N  WTL  P E   L D YG EFE  YE YE      E K  +K+SA
Sbjct: 332 LWVPDLFMKRVEANEEWTLMCPHECPGLSDTYGDEFERLYEKYE-----AEGKGRKKVSA 386

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S Q+++G +HSSNLCTEI   SS +E AVCNL
Sbjct: 387 SKLWFAILDAQTETGTPYMLYKDACNKKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNL 446

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSI L     +  FDY KL    +   R L+ +IDIN + + +A+KSN  HR IG+G+ G
Sbjct: 447 GSIALNKFVGDKTFDYKKLHEVTKVLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQG 506

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              A  L+ +P+ S EA E+  +  E I   A+ AS E+A   G Y +F+GS   +G+  
Sbjct: 507 LADAFILMRLPFDSDEAREVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTSEGILQ 566

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D    + +V+       T    W+ L++RVK  G+RNS  +A  PTA+ A I G ++SI
Sbjct: 567 FD----MWDVKP------TDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESI 616

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  +SG+F VVN  L+ +L +  LW + +   +  ++GSI  IE IPDD+K
Sbjct: 617 EPYTSNIYSRRVLSGEFQVVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIK 676

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            ++ T +E+    LI+ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT  Y
Sbjct: 677 ALYKTVWELSQRTLIDMAADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMY 736

Query: 902 YLRSRSATSVEKSTL 916
           YLRSR+AT+  + T+
Sbjct: 737 YLRSRAATNAIQFTV 751


>gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SouthAfrica7]
          Length = 788

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 320/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ L+DRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG+EFE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------------SE 595
           FKD  N  +P  H G++ SSNLCTEI  N++                           S 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463

Query: 596 ETAVCN-LGSINLLAHFANNQFDYDKLASTIRTAV------------------------- 629
            T   N L S ++L       +   K+A   +TAV                         
Sbjct: 464 ITKCANKLTSTDILK--GKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus]
          Length = 792

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 292/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++  S +D  +   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK++  T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|132609|sp|P07742|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
          Length = 792

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++  S +D  +   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLDIVMANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKPLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W++ M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|208434597|ref|YP_002266263.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
 gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
          Length = 788

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 318/827 (38%), Positives = 450/827 (54%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINL------------ 607
           FKD  N  +P  H G++ SSNLCTEI  N++     +      G+I              
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631
           +  +AN     D           K+A   +TAV                         R+
Sbjct: 464 ITKYANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 643 KVKVNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           SLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
          Length = 811

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 313/819 (38%), Positives = 452/819 (55%), Gaps = 70/819 (8%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  + L D     V +   +       E +L      ++  LI ++P ++++ AR L   
Sbjct: 31  ELSADLPDADPGRVAAAALRGRSRHAGEEELRELATEAAAGLISEDPAHSRLAARLLTLT 90

Query: 228 LRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +R E  +   T +       H E   L  +    ++     ARL  ++++D D       
Sbjct: 91  IRAEAASQGVTSFTSSVATGHRE--GLVADRTAAFVRRHA-ARL--DALVDPDA------ 139

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE----KR 338
                D  F Y GL+ L+ RY L    +R  IE PQ F +RVA GLA +E ++      R
Sbjct: 140 -----DDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLA-EEADRAGAGADR 193

Query: 339 AVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
           AVE     + L+S   ++ S+PTLFNSGTRHPQ+SSCFL   P+D L  I+    + A L
Sbjct: 194 AVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELDSIYSRYHQVARL 253

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K++GG+G  ++ +R  GA I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLE
Sbjct: 254 SKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQGGRRKGAAAVYLE 313

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V  L DL
Sbjct: 314 TWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPSDVPGLTDL 373

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G EF+ AY     +A   E    R + A  L+ +M+  L  TG  W+TFKD  N  + Q
Sbjct: 374 WGAEFDAAY-----RAAEAEGLAVRTLPARELYGRMMRTLASTGTGWMTFKDTANRTANQ 428

Query: 574 --QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---------------F 616
             +   V+HSSNLCTEI   +   ETAVCNLGSINL A                      
Sbjct: 429 TAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAGAADGGI 488

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +T+RTAV  LD VID+N +  E+A +SN   R +GLG+MG Q  L  L +P+ S
Sbjct: 489 DWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRLRLPFDS 548

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  ++    E +   A   S ELA   G   +++ +   +GV   D          ++
Sbjct: 549 PEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHY--------DV 600

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++   R  W  L++R+   GMRN+  +AIAPTATIA+I GV + ++P   NL+ +  +S
Sbjct: 601 ELSWPER--WAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRETLS 658

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F  VN +LV +LK+   WD      L+  +GS+  +  +P+++++++ TA+E+    L
Sbjct: 659 GEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQRAL 718

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++  
Sbjct: 719 IDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAR 778

Query: 917 KGVDGKLNAVP-VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     P V DP +   SL  P        CE CQ
Sbjct: 779 AQRPAAEAPAPTVPDPEAVACSLENPEY------CEACQ 811


>gi|73988079|ref|XP_534027.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           1 [Canis familiaris]
          Length = 792

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TELWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
 gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
          Length = 788

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 320/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607
           FKD  N  +P  H G++ SSNLCTEI  N++     +      G+I            N 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTDNH 463

Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631
           +   AN     D           K+A   +TAV                         R+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
               W+                           + +A++ID   LI+ A+ RQKWIDQ Q
Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKVAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           anisopliae ARSEF 23]
          Length = 905

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/777 (37%), Positives = 440/777 (56%), Gaps = 52/777 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y             +  + +        +  + H+  +D 
Sbjct: 82  AVSNLHKQTKKQWSSVVSDLYHYVNPKNERASPMISKDTY--------ECVMRHKDELDS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+     E  
Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE-- 184

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L+  AM++K
Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D Y
Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  YE YER+      K  R I A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GEEFEALYEKYEREG-----KGRRTIRAQKLWYSILEAQTETGNPFMLYKDACNKKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L A   +   ++D+ KL    +  VR L
Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDFKKLHEVTQVVVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPEA E+  +  E I  
Sbjct: 479 NKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++AS+ELA+E+G YS+FKGS   +G+   D   +            +    WD LK++
Sbjct: 539 AALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP----------SDLWEWDTLKQQ 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L  
Sbjct: 589 IKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923
           LN+++ +PS  K+  ++   W +GLKT  YYLR+++A      +V++  LK  D  +
Sbjct: 709 LNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADANV 765


>gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
           lytica DSM 7489]
 gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           lytica DSM 7489]
          Length = 825

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 307/816 (37%), Positives = 466/816 (57%), Gaps = 50/816 (6%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
           LI F+  ++   V + C GL  +   + V     + +YDG++ S+L+      + T+   
Sbjct: 12  LIMFD--KITARVRKLCYGLNALVDPLKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTT 69

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P+YAK+ AR  +  L        +K  +K+    M+ LY EY       G KA LL + 
Sbjct: 70  HPDYAKLAARISVSNL--------HKNTKKSFSEVMKDLY-EYVNP--RTGKKAPLLSDE 118

Query: 273 MMDFDLVY-----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           +  F ++      L + + Y RDF ++Y G + L   Y L +NG   E PQ   MRV++G
Sbjct: 119 V--FKVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIG 176

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGA 386
           + L + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  
Sbjct: 177 IHLNDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDT 233

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRK 445
           L++ A +++ +GG+G     VR  G++I GTNG S GV+P L+V NDTA  V+QGG KRK
Sbjct: 234 LKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVDQGGGKRK 293

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+   Y+E WH D+ EFLDL+KN G +  R  D+  A WIPDLFM+RV  NA WTL  P+
Sbjct: 294 GSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTLMCPN 353

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E  DL+  + KEFE AY  +E      E K  + I A  LW K+L    ETG P++ +KD
Sbjct: 354 ECPDLYKKHDKEFEEAYLAFE-----AEGKGRKTIKARDLWEKILESQIETGTPYMLYKD 408

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L     N +FD+ +L    
Sbjct: 409 AANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDHKELFRVT 468

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +   R L+ VID N + + +A+ SN  HR IGLG+ G   A  ++ +P+ S EA ++  E
Sbjct: 469 KRVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKKLNQE 528

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E + + A++AS+E+A+E G YSS++GS   +G F  +  G+     DEL    + R  
Sbjct: 529 IFETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGI---KDDEL----SGRWD 581

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W++L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  
Sbjct: 582 WEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 641

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ +L Q  LW+E++  +L   +GSI +I+ IP+D+K+++ T +E+    +I+ +  R  
Sbjct: 642 LLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSRHRGY 701

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EK 913
           +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A              EK
Sbjct: 702 FIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVDNSKKKEK 761

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             ++  + KL AV      ++T     P+   SD E
Sbjct: 762 PVVEAPEPKLAAVSAAPKATATELKVNPTPADSDVE 797


>gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F16]
          Length = 788

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 319/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------------- 629
           N +   AN     D           K+A   +TAV                         
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella
           succinogenes DSM 1740]
 gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella
           succinogenes]
          Length = 788

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 315/840 (37%), Positives = 454/840 (54%), Gaps = 122/840 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++   G +   +  +++     A  GL++VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVIKRSGRVEPLDVTKIQKFTHSAVLGLENVSQSELEVDAKIQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + P +  V AR  L  L        Y K  + T +       +YF R   EG
Sbjct: 62  TAVDKIDVDAPEWTYVAARLFLYDL--------YHKVNRFTGYGK---LKDYFERGESEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
              R++      FDL +L   +  ERD  F YLG++ LYDRY +    ++ IE+PQ  FM
Sbjct: 111 ---RIIKGLRGKFDLDFLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  + AV+FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEREPNEWAVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+ ND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKYGGGIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH D+ +F+DL+KN+G++RRR HD+  A WIPDLFMKRV ++  WTL 
Sbjct: 288 TRKGAISVYLEPWHTDIFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTLL 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +L+G+ FE  Y  YE     G IK    I A  LW+K+LT  FE G P++ 
Sbjct: 348 DPHECQDLTNLHGEAFEKRYLEYE--CMEGIIK--ETIRAKELWKKVLTSYFEIGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAV------ 599
           FKD  N  +P  H G++ SSNLCTEI  N+                   EE A+      
Sbjct: 404 FKDNANRLNPNAHKGIIRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDTG 463

Query: 600 ---------------------------------CNLGSINLLAHFANNQFDYDKLASTIR 626
                                            CNL SINL     + Q D +++   + 
Sbjct: 464 VEKRANKITSMDSLQGKKVFIAERIAQEGKTAVCNLASINLSK--IHTQEDIERV---VP 518

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR+LDNVID+N +  +K K++N   RAIGLG+MG    L    I + S E +E  DE 
Sbjct: 519 IAVRMLDNVIDLNFYPNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEI 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-- 744
           ME +S+HAI AS  LA+E+G Y  F+GS W +G+FPID    LA    +  ++R      
Sbjct: 579 MEQVSYHAIKASSTLAKEKGIYPDFEGSNWSKGIFPID----LANSEAKKLVDRGGLFGT 634

Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV
Sbjct: 635 DCDWDSLREQVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVV 694

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L  E      W+                           + +A+++D   LI++AS 
Sbjct: 695 APNLSLE-----TWN--------------------------FYQSAYDLDQNLLIKAASI 723

Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           RQKWIDQ QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S  + E +  + ++
Sbjct: 724 RQKWIDQGQSTNIFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQSPQAEENTMDRSIE 783


>gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F30]
          Length = 788

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 319/827 (38%), Positives = 451/827 (54%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------NL 607
           FKD  N  +P  H G++ SSNLCTEI  N++     +      G+I            N 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 608 LAHFANNQFDYD-----------KLASTIRTAV-------------------------RV 631
           +   AN     D           K+A   +TAV                         R+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
               W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 ---TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Sat464]
          Length = 788

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 317/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTA-------------------------V 629
           N +  +AN     D           K+A   +TA                         V
Sbjct: 462 NNITKYANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/753 (37%), Positives = 439/753 (58%), Gaps = 40/753 (5%)

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLE 226
           E    GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++ 
Sbjct: 23  EALADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVS 81

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L++E  T+ Y    +    E+  L   Y    ++   K +   E M+D           
Sbjct: 82  SLQKE--TSGYATATRELS-EIGILSDTY----VDFAAKNQFALEEMID----------- 123

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           Y+RD+ F+Y G + L   Y L + G  +E PQ  FMRVA+ +A  + E+ +   E Y+LL
Sbjct: 124 YKRDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLL 180

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
           S  ++  +TPTLFN+G +  QLSSCFL  + +D + GI+  L++ A+++K +GG+G    
Sbjct: 181 SHGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIH 240

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464
            +R  GA I GTNG S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLD
Sbjct: 241 NIRATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLD 300

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           LRKN G +  R  D+  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ 
Sbjct: 301 LRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFSPHNTKGLSDLYGAEFTQKYQE 360

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           YER          + I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNL
Sbjct: 361 YERMG-----LGVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNL 415

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI   S+ +ETA CNL S+ L     ++ FD+DKL    + A++ LD VID+N H  +
Sbjct: 416 CAEIMEVSTPDETAACNLASMALPKFVTDSGFDFDKLHQVTKVAIKNLDRVIDVNYHPTD 475

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K +KSNH HR +GLG+ G       +H+P+ S EA+++  +  E +   ++ AS E+A +
Sbjct: 476 KIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQ 535

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +GAYSS+ GS    G F  D       + DE     +SR  W +LK+++   G+RNS  +
Sbjct: 536 KGAYSSYDGSPISHGQFQFD-------LWDE---QPSSRWDWSQLKRQIAEHGVRNSLLI 585

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ A I G +++ +    N+Y +  +SG+F ++N  LV++L+QR LW   +   +
Sbjct: 586 AQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAI 645

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ R  ++ Q+QSLNL+L  P+  +
Sbjct: 646 ILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQ 705

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ ++  AW  GLKT  YYLRS+ +T+  K T+
Sbjct: 706 INAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738


>gi|224437766|ref|ZP_03658713.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
          Length = 792

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 314/825 (38%), Positives = 452/825 (54%), Gaps = 118/825 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++     A  GL+ V+   +  +      D ++  +++  LI 
Sbjct: 5   ITVVKRNGRIEPLDVSKIQKHTSAAVEGLEGVTQSELEVDAKILFKDKITTEEIQQTLIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++   I+ + PN++ V AR  L  L  +V   T YKK +            +YF +   E
Sbjct: 65  TAVDKIDVDAPNWSFVAARLFLYDLYHKVTGWTGYKKLE------------DYFIQGENE 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
           G   RLL      +DL +L + +K ERD  F YLG++ LYDRY L   N   IE+PQ  F
Sbjct: 113 G---RLLRGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHMF 169

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    AV+FY+++S F  +C+TPTL N+ T   QLSSCF+ + PD++ 
Sbjct: 170 MAIAMFLAQNENDCNAWAVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+AND A+AV+Q 
Sbjct: 230 GIFDAYKEMALLSKYGGGIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQL 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH DV EF+DLRKN+G++RRR HD+  A WI DLFMKRV  N  WTL
Sbjct: 290 GTRKGAIATYLEVWHNDVFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  +L +LYG+EFE  Y  YE+     E  +  ++ A  LW+K+LT  FE+G P++
Sbjct: 350 FDPYQCPELTELYGEEFEAKYLEYEQN----EHILKHRVVAKDLWKKILTNYFESGLPFL 405

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------------- 595
            FKD  N  +P  H G++ SSNLCTEI  N++                            
Sbjct: 406 CFKDNANRANPNGHAGIIRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELDN 465

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV------------------RVL--- 632
               A   + S++ L       F   ++A    TAV                  RVL   
Sbjct: 466 GVRKAANKITSVDSL--LGKKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIA 523

Query: 633 ----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
               DNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +   DE ME
Sbjct: 524 IRMLDNVIDLNFYPNRKVKVTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVME 583

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ISF+AIS+S +LAQE+G Y  F GS W +G+ PID    LA       ++R    + + 
Sbjct: 584 LISFYAISSSSDLAQEKGKYPQFDGSNWSKGIMPID----LASKEALKLVDRGGLFSQQC 639

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+K+VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  +++ N+SG   VV  
Sbjct: 640 DWESLRKKVKTQGIRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVVVP 699

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L       D W+                           + +A++ID   LI++A+ RQ
Sbjct: 700 HL-----SADTWN--------------------------YYISAYDIDQTLLIKAAAVRQ 728

Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           KWIDQ QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 729 KWIDQGQSTNVFVRLDKASGKMLNDIYMLAWRLGLKSTYYLRSQS 773


>gi|296479831|gb|DAA21946.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
          Length = 791

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ L+      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++      +V + I A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYERYEKEG-----RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W+ LK+++  
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|149719333|ref|XP_001499936.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase subunit
           M1) (Ribonucleotide reductase large subunit) [Equus
           caballus]
          Length = 792

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/762 (38%), Positives = 447/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +  +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKPTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+    +E    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HSEDIDA 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L +   + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTYDFQKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +L++E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLSREDGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I+ IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           acridum CQMa 102]
          Length = 905

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/759 (37%), Positives = 433/759 (57%), Gaps = 47/759 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y             +  + +        +  + H+  +D 
Sbjct: 82  AVSNLHKQTKKQWSSVVSDLYHYVNPKNERASPMISKDTY--------ECVMRHKDELDS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+     E  
Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE-- 184

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L+  AM++K
Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D Y
Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  YE YER+      K  R + A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GEEFEALYEKYEREG-----KGRRTVRAQKLWYSILEAQTETGNPFMLYKDACNKKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L A    N+  +D+ KL    +  VR L
Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDFKKLHEVTQVVVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPEA E+  +  E I  
Sbjct: 479 NKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++AS+ELA+E+G YS+FKGS   +G+   D   +            +    WD LK++
Sbjct: 539 AALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP----------SDLWEWDTLKQQ 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L  
Sbjct: 589 IKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           LN+++ +PS  K+  ++   W +GLKT  YYLR+++A +
Sbjct: 709 LNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAA 747


>gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus]
 gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus]
 gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus
           norvegicus]
          Length = 792

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 448/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ LY      YI    G  + ++  S ++  + + 
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVASSTLEIVMAHK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IP+DLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
 gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
          Length = 802

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/791 (37%), Positives = 450/791 (56%), Gaps = 51/791 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   +    ++   VE+ C GL        DV+ K++     + +YDG++ S+L+
Sbjct: 3   VIKRDGHKEAVKFDKITARVEKLCYGLNAEYVDAIDVAKKVI-----QGLYDGVTTSELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ +L  K P+YA + +R  +  L +  + +  K         M+ LY      Y
Sbjct: 58  NLAAETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSKT--------MENLY-----NY 104

Query: 260 IEE--GVKARLLHESMMDFDLVYLA---NDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           I+   G  A LL + + +  + + A   + + Y+RDFAF+Y G + L   Y L ++G   
Sbjct: 105 IDPKVGKPAPLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVA 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRV++G+  ++ +     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL 
Sbjct: 165 ERPQHMFMRVSVGIHKEDIDA---VIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLL 221

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V ND
Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFND 281

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+R
Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRR 341

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +N  W+LF P E   LH+ +G+EFE  Y  YE+     E +  + + A  LW  +L  
Sbjct: 342 VEENGDWSLFCPHEAPGLHECWGEEFEKLYTKYEK-----ENRARKTVKAQDLWFAVLDA 396

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD  N +S QQ++G + SSNLCTEI   + + E AVCNL S+ L     
Sbjct: 397 QIETGTPYLLYKDSANRKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVI 456

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + QFD++KL      A   L+ +ID N + +++A+ SN  HR IGLG+ G   A  L+  
Sbjct: 457 DGQFDHEKLYEVTYQAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRY 516

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA ++  E  E I F A++AS +LA + GAY ++ GS   +G+   D  G+    
Sbjct: 517 PFESEEAKKLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTP-- 574

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 575 --------SPRWDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTR 626

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L +  LWD  M + +   +GSI +I  IP  +K+++ T +EI 
Sbjct: 627 RVLSGEFVVVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIK 686

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QSLNL++D PS  KL  ++  AW  GLKT  YYLR+++A   
Sbjct: 687 QRTIIDMAADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQA 746

Query: 912 EKSTLKGVDGK 922
            + T++   G+
Sbjct: 747 VQFTVEKQGGQ 757


>gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Oryctolagus cuniculus]
          Length = 792

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----SYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTE+   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++G    +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa]
 gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 288/763 (37%), Positives = 434/763 (56%), Gaps = 54/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYL 296
            QK+    ++ +Y  +  +    G+KA L+ + + +  +     L +++ Y+RDF ++Y 
Sbjct: 90  TQKSFSETIKIMYNHFNDK---SGLKAALIADDIYEIIMKNSARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRVA+G+   + +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSAHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH DV EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +GKEFE  Y  YER       
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGKEFEELYTRYERNG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLL-----------AH---------FANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L            +H         F +  FD++KLA         L+ 
Sbjct: 439 TETAVCNLASIALPRFVREMGVPVESHPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E A++SN  HR IG+G+ G      LL + + SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETARRSNFRHRPIGIGVQGLADTFILLGMSFDSPEAQKLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS E+A   G Y +++GS   +G+   D  G+                 WD L++ + 
Sbjct: 559 LKASSEIAAREGPYETYEGSPVSKGILQPDMWGVTPS---------NLLWDWDALREMIS 609

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 610 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 669

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW  A+ + + Y DGS+ NI  IP+DLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 670 LWSPALKNKIIYEDGSVQNIPEIPNDLKFIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 729

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+
Sbjct: 730 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTV 772


>gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           hepaticus ATCC 51449]
 gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 791

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 319/815 (39%), Positives = 452/815 (55%), Gaps = 120/815 (14%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEK 227
           A  GL+ VS   +  +      D ++  +++  LI ++   I+   PN++ V AR  L  
Sbjct: 29  AVEGLEGVSQSELEVDAKILFKDKITTEEIQQTLIKTAVDKIDVNTPNWSFVAARLFLYD 88

Query: 228 LRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L  +V   T YKK +            EYF +   EG   +L+      +DL +L + +K
Sbjct: 89  LYHKVTGWTGYKKLE------------EYFEQGEREG---KLISGIKEKYDLAFLDSHIK 133

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            ERD  F YLG++ LYDRY L  + +R IE+PQ  FM +AM LA  E +    AV+FYN+
Sbjct: 134 PERDLQFNYLGIKTLYDRYLLKDSNNRPIELPQHMFMAIAMFLAQNEKDCNAWAVKFYNM 193

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S F  +C+TPTL N+ T   QLSSCF+ + PD++ GIF A +E A+L+KY GG+G D++
Sbjct: 194 ISLFEVICATPTLANARTTRHQLSSCFVGSTPDNIEGIFDAYKEMALLSKYGGGIGWDFS 253

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRGLG+ I G    + GV+PFLK+AND A+AV+Q G RKGA+  YLE WH D+ +F+DL
Sbjct: 254 RVRGLGSFIDGHKNAAGGVVPFLKIANDVAIAVDQLGTRKGAIATYLEIWHNDIHDFIDL 313

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RKN+G++RRRTHD+  A WI DLFMKRV  N  WTLF P E  +L +LYG+ FE  Y  Y
Sbjct: 314 RKNSGEERRRTHDLFPAIWICDLFMKRVESNEFWTLFDPYECPELTELYGEAFEAKYIEY 373

Query: 526 ERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           E Q+D    KV + +I A  LW+K+LT  FE+G P++ FKD  N  +P  H G++ SSNL
Sbjct: 374 E-QSD----KVLKSRILAKDLWKKILTNYFESGLPFLCFKDNANRVNPNAHAGIIRSSNL 428

Query: 585 CTEITLNSS--------------------SEETAVCN-----------LGSINLLAHFAN 613
           CTEI  N++                     EE  + N           + SIN       
Sbjct: 429 CTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEVKLDNGMCKRANKITSVDSIN-----GR 483

Query: 614 NQFDYDKLASTIRTAV------------------RVL-------DNVIDINCHTIEKAKK 648
             F   ++A    TAV                  RVL       DNVID+N +   K K 
Sbjct: 484 KVFITSRIAQGGATAVCNLASVNLSKINTKEDIERVLPIAIRMLDNVIDLNFYPNRKVKV 543

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG+MG    L   HI + S E +   DE ME +SF+AI +S  LAQE+G Y
Sbjct: 544 TNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEIMELVSFYAIESSANLAQEKGKY 603

Query: 709 SSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             F+GS W +G+FPID     A ++ D   +  + +  W+ L+ +VKT GMRN   MAIA
Sbjct: 604 PQFEGSNWSKGIFPIDMANKEALKIVDRGGL-FSQQCDWESLRAKVKTQGMRNGYLMAIA 662

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++I+ + G +Q+I+P Y+  + + N+SG   VV   L       D W+          
Sbjct: 663 PTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL-----NLDTWN---------- 707

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKL 885
                            + +A++I+   +I++A+ RQKWIDQ QS N++  LD+ SGK L
Sbjct: 708 ----------------YYVSAYDIEQTHIIKAAAVRQKWIDQGQSTNIFVRLDKASGKML 751

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           + IY  AW +GLK+TYYLRS+S  + E+   + V+
Sbjct: 752 NDIYTLAWKLGLKSTYYLRSQSPEAEEQVMDRSVE 786


>gi|311263373|ref|XP_003129661.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Sus scrofa]
          Length = 791

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ L+      YI    G  + ++  S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVARSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L I+G   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YERQ       V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYERQG-----HVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
 gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus]
          Length = 791

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ L+      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++      +V + I A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYERYEKEG-----RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W+ LK+++  
Sbjct: 541 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+   I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|149634836|ref|XP_001505371.1| PREDICTED: similar to M1 subunit of ribonucleotide reductase
           [Ornithorhynchus anatinus]
          Length = 792

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKYPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      Y+    G  + ++ ++ +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYVNPHNGKHSPMVAKTTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHEEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDTCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L       + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNQQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA++ G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 DASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTP----------TDLWDWKALKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IP+DLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|109107703|ref|XP_001113010.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Macaca mulatta]
          Length = 792

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 290/762 (38%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W+ LK+ +  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|225438479|ref|XP_002278202.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 294/800 (36%), Positives = 443/800 (55%), Gaps = 57/800 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R    G+KA L+   + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKEMYNHFNER---SGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I G  +E PQ   MRV++G+   + +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G+EF   Y  YER+      
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGHWSLFCPNEAPGLADCWGQEFVDLYTQYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S+
Sbjct: 379 KAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSA 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
           +ETAVCNL SI L  +                      N  FD+DKLA         L+ 
Sbjct: 439 DETAVCNLASIALPRYVREKGVPMESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK+SN  HR IGLG+ G      LL + + SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA   G Y ++ G    +G+   D  G+            +SR  WD L+K + 
Sbjct: 559 LKASCELAMREGPYETYDGCPVSKGILQPDMWGVTP----------SSRWDWDALRKMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 ENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + Y +GS+  +  IP+DLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 LWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+      L     T  + 
Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSILQERTKTADDD 786

Query: 934 STHSLGIPSSCTSDTECEVC 953
            T    +  S T+  EC  C
Sbjct: 787 DTKMAQMVCSLTNREECMAC 806


>gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/801 (36%), Positives = 444/801 (55%), Gaps = 58/801 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R     +KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKVMYYHFNER---SAMKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRVA+G+   + +    AV  Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---AVRTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+ DLFM+RV  N  W+LF P+E   L D +G+EFE  Y  YER+      
Sbjct: 324 RARDLFYALWVSDLFMERVQSNGQWSLFCPNEAPGLADCWGEEFEKLYTQYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L  +                      N  FD+DKL          L+ 
Sbjct: 439 TETAVCNLASIALPRYVREKGVPMESHPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + ++ A++SN  HR IG+G+ G      LL + + SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVDTARRSNMRHRPIGIGVQGLADTFILLGVAFDSPEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S ELA + G Y ++ GS   +G+   D  G++           +SR  WD L++ + 
Sbjct: 559 LKTSSELAAKEGPYETYSGSPISKGILQPDMWGVMP----------SSRWDWDALREMIA 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + +++ Y DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 LWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT-DPN 932
           +++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+      L+  P+  + +
Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSMLHEKPMAEEED 786

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
            +T    +  S T+  EC  C
Sbjct: 787 DNTKMAQMVCSLTNREECLAC 807


>gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 83]
          Length = 788

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 319/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632
           N +   AN     D           K+A   +TAV                  RV+    
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
              DNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas denitrificans DSM 1251]
          Length = 788

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 311/840 (37%), Positives = 466/840 (55%), Gaps = 121/840 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI 
Sbjct: 2   VTIIKRNGRTEKLDISKIQKYTSAAVEGLSNVSQSELEVDAQIHFRDGITSKEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  L  L  EV                 C    YF R  +EG
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFLFNLYHEV-----------NGFTGYCSLENYFERGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              RLL+     ++L  L   +K ERD  F YLG++ LYDRY +   N + IE+PQ  FM
Sbjct: 111 ---RLLYGLKGMYNLEELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA +E +KE+ A++FYN++S+F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AIAMFLAQREEKKEEWAIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF +  E AML+K+ GG+G DWT VR +G++I G    + G +PFLK+ ND AVAV+Q G
Sbjct: 228 IFDSYAEMAMLSKFGGGIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WTLF
Sbjct: 288 TRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  +L  L+G+EF   Y   E+     E  +  K+ A  LW+K+LT  FETG P++ 
Sbjct: 348 DPYDCRELTTLHGEEFNKKYVELEKN----EAIIKEKLKAKNLWKKILTSYFETGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE--------- 596
           FKD  N  +P  H G++ SSNLCTEI  N+                 S EE         
Sbjct: 404 FKDNANRANPNSHSGIIRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDSG 463

Query: 597 --------TAVCNLG----------------------SINLLAHFANNQFDYDKLASTIR 626
                   TA+ ++G                      S+NL     N + D D++   + 
Sbjct: 464 LKKPAKKVTALDSIGGREIYVVEKEKINGDTAVCNLASVNL--SRINTKEDIDRV---VP 518

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            A+R LDNVID+N + IEK K++N   RAIGLG+MG    L    I + + E  +  DE 
Sbjct: 519 IAIRALDNVIDLNFYPIEKVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEI 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRL 744
           ME +SF+AISAS ++A E+G+YS ++GS W +G+ P+D     AEV++ +       S  
Sbjct: 579 MESVSFNAISASSDIALEKGSYSEYEGSKWSRGIMPMDHA--TAEVKNLVDRGGLFASAY 636

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL+ +VK  G+RN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV  
Sbjct: 637 EWEELRTKVKNQGIRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSGLIPVV-- 694

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
             V EL   + W                            +  A++++   LI++A+ RQ
Sbjct: 695 --VPELSP-ETW--------------------------AYYTPAYDLNQTLLIKAAAIRQ 725

Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKGV 919
           KW+DQ QSLN++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S   A+ VE  +++ V
Sbjct: 726 KWLDQGQSLNIFITLDKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMASDVEDRSMECV 785


>gi|73988085|ref|XP_862223.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           5 [Canis familiaris]
          Length = 793

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/763 (38%), Positives = 447/763 (58%), Gaps = 43/763 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TELWDWKLLKEKIAN 590

Query: 756 -IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R 
Sbjct: 591 KYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 IHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 753


>gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           hominis ATCC BAA-381]
 gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 793

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 314/830 (37%), Positives = 452/830 (54%), Gaps = 121/830 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  ++     E+  GL +VS   +  +      D +S  +++  LI 
Sbjct: 1   MKVVKRNGRTEELDISKIRKYTRESIEGLDNVSLSELELDAKIQFRDMISTEEIQQTLI- 59

Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             +T +EK    +PN+  V AR  L  L  +V T          ++ ++    EYF R  
Sbjct: 60  --KTAVEKIDVDQPNWTFVAARLFLYDLYHKVTTF-------NGYNSLR----EYFERGE 106

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
           +EG   ++L      +DL  L + +K +RD  F YLG++ LYDRY L  N +R IE+PQ 
Sbjct: 107 KEG---KILLGLKEKYDLDDLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQ 163

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FM +AM LA  E + +  A +FY+LLS F  MC+TPTL N+ T   QLSSC++ + PD+
Sbjct: 164 MFMAIAMFLAQNELDCQTWAKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDN 223

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+
Sbjct: 224 IEGIFDSFKEMALLSKFGGGIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVD 283

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G RKGA+  Y+ETWH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKR+ +NA W
Sbjct: 284 QLGTRKGAIATYIETWHMDIGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANW 343

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558
           TLF P EVSDL D YG+EFE  Y  YE  +     K+ +  I A  LW+K+LT  FE+G 
Sbjct: 344 TLFDPAEVSDLCDCYGEEFEKKYIEYENNS-----KISKSLIPAKELWKKILTSCFESGM 398

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINLLAHFANNQ 615
           P++ FKD  N  +P  H G++ SSNLCTEI  N+      +    N GSI L     +  
Sbjct: 399 PFLCFKDNANKANPNAHEGIIRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDIT 458

Query: 616 FD---------------------------YDK-------LAS--------------TIRT 627
            D                           YD+       LAS               +  
Sbjct: 459 LDNGLIKKGKKITSLDALDGKDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPI 518

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVI++N +   K K +N   RAIGLG+MG    L    IP+ S E  E  D+ M
Sbjct: 519 AIRMLDNVINLNFYPHIKVKHTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIM 578

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744
           E IS++AI AS  LA E+G Y  F+GS W +G+ PID    LA    +  + R       
Sbjct: 579 ENISYNAILASSNLAIEKGKYPDFEGSNWSKGIMPID----LANEEAKALVKRGGLFDED 634

Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV
Sbjct: 635 GCDWKYLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV 694

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  +  D  +++  A+E+D   LI++A+ 
Sbjct: 695 -------------------------------VPNLSPDTWQLYTPAYELDQRLLIKAAAV 723

Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           RQKWIDQ QSLN++  L++ S + L+ IY  AW +GLK+TYYLRS+S  S
Sbjct: 724 RQKWIDQGQSLNIFISLEKSSARILNDIYTLAWKLGLKSTYYLRSQSPDS 773


>gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 294/800 (36%), Positives = 441/800 (55%), Gaps = 57/800 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYACLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R    G+KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKIMYYHFNER---SGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRVA+G+   + +    AV+ Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGQVLERPQHMLMRVAVGIHKDDIDS---AVKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P E   L D +G++FE  Y  YER+      
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLTDCWGEKFEELYLQYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A +LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   SS 
Sbjct: 379 KAMKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L  +                      N  FD+DKLA         L+ 
Sbjct: 439 TETAVCNLASIALPRYVREKGVPMESHPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID+N + +E AK+SN  HR IG+G+ G      LL + + SPEA ++  E  E I +HA
Sbjct: 499 VIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKEIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S  LA + G Y ++ GS   +G+   D  G+            ++R  WD L++ + 
Sbjct: 559 LKTSCGLAAKEGPYETYSGSPISKGILQPDMWGVAP----------SNRWDWDALREMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + Y DGS+  I  IP DLK I+ T +EI    L++ A+ R  +IDQ+QSLN
Sbjct: 669 LWSPTLKNKIIYEDGSVQKIPEIPADLKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +++D+P+  KL  +   AW  GLKT  YYLRSR+A    K T+      L      + + 
Sbjct: 729 IHMDQPNFGKLTSLQFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSALREKSNVEDDD 786

Query: 934 STHSLGIPSSCTSDTECEVC 953
           +T    +  S T+  EC  C
Sbjct: 787 NTKMAQMVCSLTNRDECLAC 806


>gi|86132509|ref|ZP_01051103.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
 gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
          Length = 874

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 299/793 (37%), Positives = 449/793 (56%), Gaps = 48/793 (6%)

Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V++ C  L D    + +S    + +YDG++ S+L+     ++ ++    P+YAK+ AR  
Sbjct: 22  VKKLCYELSDFVDPVKISMRVIEGLYDGVTTSELDNLAAETAASMTTSHPDYAKLAARIS 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---- 280
           +  L        +K  +K+    M  LY         + V  R   ++ M  D VY    
Sbjct: 82  VSNL--------HKNTKKSFSEVMTDLY---------QYVNPRTGKKAPMVADEVYKVIM 124

Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + Y RDF ++Y G + L   Y L ING   E PQ   MRV++G+ L + E 
Sbjct: 125 DNKDELDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSIGIHLNDLEA 184

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
            K   E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + GI+  L++ A ++
Sbjct: 185 AK---ETYMLMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEGIYDTLKQTAKIS 241

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           + +GG+G     +R  GA+I GTNG S G++P LKV NDTA  V+QGG KRKG+   Y+E
Sbjct: 242 QSAGGIGLSIHNIRAKGAYIGGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGSFAIYME 301

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FLDL+KN G +  R  D+  A WI DLFMKRV ++  WTL  P+E  DL ++
Sbjct: 302 PWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTLMCPNECPDLFNV 361

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  Y  YE Q +RG     R I A  LW K++    ETG P++ +KD  N +S Q
Sbjct: 362 HGEEFEALYTKYE-QEERGR----RTIKARELWEKIMESQIETGTPYMLYKDAANRKSNQ 416

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +++G + SSNLCTEI   +S +E AVCNL SI L     N  FD+ +L +    A + L+
Sbjct: 417 KNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVKNGAFDHQELYNITVRATKNLN 476

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            VID N + + +A+ SN  HR IGLG+ G       L +P+ S EA ++  E  E + F 
Sbjct: 477 KVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDEAKKLNQEIFETLYFA 536

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A++AS ++A+  G Y SF+GS   QG F  +    L  ++DE     + R  W  L+K V
Sbjct: 537 AVTASKDMAKVEGPYQSFEGSPISQGEFQYN----LWNIKDE---ELSGRWDWASLRKEV 589

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L   
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVAL 649

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           +LW++ + + +   +GSI  I+ IP DLK+++ T +E+    +I+ + +R  +IDQ+QSL
Sbjct: 650 NLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+++  +  KL  ++  AW  GLKT  YYLR++SA   +K TL     K    PVT P 
Sbjct: 710 NLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTL---SAKKKEAPVTAPT 766

Query: 933 SSTHSLGIPSSCT 945
           +    +   ++ T
Sbjct: 767 APKQQVAARAAQT 779


>gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens]
          Length = 792

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 445/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa
           Japonica Group]
          Length = 814

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295
            +K+    ++ +Y  +  R    G+ A L+    +E +M  +   L +++ Y+RDF ++Y
Sbjct: 90  TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L + G  +E PQ   MRV++G+   + E    A++ Y+L+S   F  ++
Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I
Sbjct: 203 PTLFNAGTTRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G + 
Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+    +
Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I     + A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S
Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437

Query: 594 SEETAVCNLGSINL--------------------LAHFANNQFDYDKLASTIRTAVRVLD 633
             ETAVCNL SI L                     +   N  FD+DKLA    T    L+
Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + +E AK+SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I FH
Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           ++ AS ELA + G Y +++GS   +G+   D   ++           + R  W  L+  +
Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L + 
Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +W  A+ + + Y DGS+  +  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSL
Sbjct: 668 GVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++++P+  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
           [Bacteriovorax marinus SJ]
          Length = 785

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 285/761 (37%), Positives = 435/761 (57%), Gaps = 44/761 (5%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--- 232
           +   ++ S+  + ++DG+S  +L+     ++  L  + P+Y+K+  R  +  L +E    
Sbjct: 34  IDPSLITSKVIEGIFDGISTPELDKLAGETAAYLSTQHPDYSKLAGRIAVSNLHKETRGC 93

Query: 233 ----LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
               +  +Y     AT      +  E +   +E    A +L  ++ D            +
Sbjct: 94  FSENIKEMYNYVNPATGEMAPLISKELYEVVME---NAEMLDTAVDD------------K 138

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF ++Y G + L   Y L ++G   E P    MRV++G+ + +    K A+E YNL+S 
Sbjct: 139 RDFNYDYFGFKTLERSYLLKMDGKITERPGQMLMRVSVGIHMNDM---KAAIETYNLMSE 195

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F  ++PTLFNSGT  PQLSSCFL T+ DD + GI+  L+++A++++ +GG+G     +
Sbjct: 196 KYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIEGIYDTLKQSALISQSAGGIGLSIHNI 255

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  G+ I GTNG S G++P LKV NDTA  V+QGG KRKGA   YLE WH D+ +FL+++
Sbjct: 256 RAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDFLEMK 315

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KNTG D  R  D+  A WI DLFMKRV  +  W+LF P E   + + YG EFE  Y  YE
Sbjct: 316 KNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFCPHECPGMAETYGAEFEALYTKYE 375

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +      K  + + A  LW  +L    ETG P++ +KD  N +S Q+++G + SSNLCT
Sbjct: 376 SEG-----KAKKVVRAQDLWFAVLESQIETGSPYMLYKDSINEKSNQKNLGTIKSSNLCT 430

Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   ++ +E AVCNL SI  N+    A   +D+ KL   +  A   L+ +IDIN + + 
Sbjct: 431 EIMEYTAPDEVAVCNLASIALNMFVDEATKTYDHKKLYDVVYRATLNLNRIIDINYYPVP 490

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +AK SN  HR IGLG+ G       +   + SPEA+E+ ++  E I F A+SAS +LA +
Sbjct: 491 EAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPEALELNNQIFETIYFAALSASKDLAMK 550

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            GAY +++GS   QG F  D  G+    ++           W  L+K V   G+RNS  +
Sbjct: 551 DGAYETYEGSPMSQGQFQFDMWGVTPSAKN---------WDWSALRKEVAEHGVRNSLLV 601

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN FLVN+L +  LWD+ M +++
Sbjct: 602 APMPTASTSQILGNNECFEPITSNIYVRRVLSGEFAVVNKFLVNDLIRAGLWDDKMRNEI 661

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             ++GSI  IERIP++LK ++ T +EI    +I  ++ R  +IDQ QSLN+++ EP+  K
Sbjct: 662 IANNGSIQAIERIPEELKGLYKTVWEISQKTVINMSAGRAPYIDQGQSLNIHMQEPNFGK 721

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN 924
           L  ++  AW  GLKT  YYLR+R+A +  + T+K    K+N
Sbjct: 722 LSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTVKNDTPKVN 762


>gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 729

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/739 (38%), Positives = 433/739 (58%), Gaps = 39/739 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L++E  T+ Y   
Sbjct: 13  VAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSLQKE--TSGYATA 70

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +    E+  L   Y    ++   K +   E M+D           Y+RD+ F+Y G + 
Sbjct: 71  TRELS-EIGILSSAY----VDFVAKNQFALEDMID-----------YKRDYQFDYFGYKT 114

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L + G  +E PQ  FMRVA+ +A  + E+ +   E Y+LLS  ++  +TPTLFN
Sbjct: 115 LERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSLCYYTHATPTLFN 171

Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G +  QLSSCFL  + +D + GI+  L++ A+++K +GG+G     +R  GA I GTNG
Sbjct: 172 AGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNG 231

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLRKN G +  R  D
Sbjct: 232 VSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARD 291

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YER      + V +
Sbjct: 292 LFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYERMG----LGV-K 346

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC EI   S+ +ETA
Sbjct: 347 TIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETA 406

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K +KSNH HR +GL
Sbjct: 407 ACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGL 466

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G YSS+ GS    
Sbjct: 467 GIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISH 526

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G F  D   L  E         +SR  W +LK ++   G+RNS  +A  PTA+ A I G 
Sbjct: 527 GQFQFD---LWCE-------QPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGN 576

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  ++GS+  I+ IP
Sbjct: 577 NEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIP 636

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDL+ ++ T +EI    +I+ ++ R  ++ Q+QSLNL+L  P+  +++ ++  AW  GLK
Sbjct: 637 DDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLK 696

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLRS+ +T+  K T+
Sbjct: 697 TGMYYLRSKPSTNAVKVTV 715


>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group]
          Length = 814

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295
            +K+    ++ +Y  +  R    G+ A L+    +E +M  +   L +++ Y+RDF ++Y
Sbjct: 90  TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L + G  +E PQ   MRV++G+   + E    A++ Y+L+S   F  ++
Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I
Sbjct: 203 PTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G + 
Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+    +
Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I     + A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S
Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437

Query: 594 SEETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLD 633
             ETAVCNL SI L                     +   N  FD+DKLA    T    L+
Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + +E AK+SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I FH
Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           ++ AS ELA + G Y +++GS   +G+   D   ++           + R  W  L+  +
Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L + 
Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +W  A+ + + Y DGS+  +  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSL
Sbjct: 668 GVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++++P+  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
 gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
          Length = 788

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 310/842 (36%), Positives = 460/842 (54%), Gaps = 125/842 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     +  +++     A   L +VS   +  +   +  DG++ ++++  LI 
Sbjct: 2   ITIIKRNGRTEPLDITKIQKYTSAAVKDLSNVSQSELEVDAQIHFRDGITSAEIQKTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++   I+ + PN+  V +R  +  L  +V   T Y   +K                Y E+
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFMFNLYHQVNGFTGYGSLKK----------------YFEK 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320
           G K   L + + D +DL  L   +K ERD  F YLG++ LYDRY +    +  IE+PQ  
Sbjct: 106 GEKEGRLLQGLADMYDLDRLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA +E EK + A++FY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMAIAMFLAQREEEKHEWAIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  E AML+K+ GG+G DWT +R +G++I G    + G +PFLK+ ND A+AV+Q
Sbjct: 226 EGIFDSYAEMAMLSKFGGGIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WT
Sbjct: 286 LGTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P +  +L  LYG+EF   Y+  E      E  V  K+ A  LW+K+LT  FETG P+
Sbjct: 346 LFDPYDTKELATLYGEEFNKRYKELEED----ESIVKEKVKAKNLWKKILTSYFETGSPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE------- 596
           + FKD  N  +P  HVGV+ SSNLCTEI  N+                 S EE       
Sbjct: 402 LCFKDNANRANPNNHVGVIRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVD 461

Query: 597 ----------TAVCNLG----------------------SINLLAHFANNQFDYDKLAST 624
                     TA+ +LG                      S+NL     N + D D++   
Sbjct: 462 SGMEKPAKKVTALDSLGGLPIYVVEKEKINGDTAVCNLASVNL--SRVNTKEDIDRI--- 516

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  AVR LDNVID+N + IEK K++N   R+IGLG+MG    L    I + S E  +  D
Sbjct: 517 VPIAVRCLDNVIDLNFYPIEKVKRTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKID 576

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TS 742
           E ME +SF+ ISAS +LA E+G Y  F+GS W +GV P+D     AEVR+ +       S
Sbjct: 577 EIMEAVSFNTISASSDLALEKGIYPDFEGSQWSKGVMPMDHAN--AEVRNLVDRGGLFAS 634

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD+L+ +VK  GMRN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV
Sbjct: 635 TYEWDDLRAKVKKQGMRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVV 694

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  +  +    +  A+E++   LI++A+ 
Sbjct: 695 -------------------------------VPNLSPETWAYYTPAYELNQTLLIKAAAI 723

Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLK 917
           RQKW+DQ QSLN++  LD+ SG+ L+ IY  AW +GLK+TYYLRS+S   A  VE  +++
Sbjct: 724 RQKWLDQGQSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEVANDVEDRSME 783

Query: 918 GV 919
            V
Sbjct: 784 CV 785


>gi|297268640|ref|XP_002799729.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 762

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/739 (38%), Positives = 438/739 (59%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 15  QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 67  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +V + 
Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRKV 353

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413

Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +
Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W+ LK+ +   G+RNS  +A  PTA+ A I G 
Sbjct: 534 GILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGN 583

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 704 TGMYYLRTRPAANPIQFTL 722


>gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis
           thaliana]
          Length = 816

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/763 (37%), Positives = 426/763 (55%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L +       KK
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNLHKNT-----KK 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
               T  +M      ++      G+K+ L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 93  SFSETIKDM------FYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G+ +E PQ   MRVA+G+   + +     ++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---VIQTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+G L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYGTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH DV EFL+LRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+      
Sbjct: 324 RARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++LT   ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L                         N  FD++KLA    T    L+ 
Sbjct: 439 TETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK SN  HR IG+G+ G   A  LL +P+ SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA   G Y ++ GS   +G+   D   ++           + R  W  L+  + 
Sbjct: 559 LKASTELAARLGPYETYAGSPVSKGILQPDMWNVIP----------SDRWDWAVLRDMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L    
Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + L   +GSI N+  IPDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 669 LWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+
Sbjct: 729 IHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTV 771


>gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens]
 gi|132608|sp|P23921|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens]
 gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens]
 gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens]
 gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens]
 gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
 gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
          Length = 792

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Callithrix jacchus]
          Length = 792

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/762 (38%), Positives = 445/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQR-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 4 [Pan troglodytes]
          Length = 792

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group]
          Length = 814

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/764 (37%), Positives = 432/764 (56%), Gaps = 57/764 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLL----HESMMDFDLVYLANDLKYERDFAFEY 295
            +K+    ++ +Y  +  R    G+ A L+    +E +M  +   L +++ Y+RDF ++Y
Sbjct: 90  TKKSFSETIKDMYGHFNER---SGLNAPLVAHDVYEVIMK-NASRLDSEIIYDRDFDYDY 145

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L + G  +E PQ   MRV++G+   + E    A++ Y+L+S   F  ++
Sbjct: 146 FGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHAS 202

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I
Sbjct: 203 PTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYI 262

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G + 
Sbjct: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+    +
Sbjct: 323 HRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKK 382

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I     + A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S
Sbjct: 383 I-----VPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437

Query: 594 SEETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLD 633
             ETAVCNL SI L                     +   N  FD+DKLA    T    L+
Sbjct: 438 PTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLN 497

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + +E AK+SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I FH
Sbjct: 498 KIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFH 557

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           ++ AS ELA + G Y +++GS   +G+   D   ++           + R  W  L+  +
Sbjct: 558 SLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVP----------SDRWNWPSLRSTI 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L + 
Sbjct: 608 SKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +W  A+ + + + DGS+  +  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSL
Sbjct: 668 GVWTPALKNKIIFEDGSVQKMTEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSL 727

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++++P+  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 728 NVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group]
 gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa
           Japonica Group]
          Length = 810

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/763 (37%), Positives = 430/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L      ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLGELAAETAAAMTASHPDYASLAARIAISNL--------HKT 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
             K+    ++ +Y  Y  R    G+ A L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TMKSFSETIKVMYMHYDER---SGLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRV++G+   + E    A++ Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVVGKVVERPQHMLMRVSIGIHKDDIES---AIKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L E A ++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMNDDSIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM+RV  N  W+LF P+E   L D +G EF+  Y+ YER+      
Sbjct: 324 RARDLFYALWIPDLFMERVQNNENWSLFCPNEAPGLADCWGDEFQNLYKKYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + +SA ALW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVSAQALWFDILKAQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSP 438

Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L            +H A         N  FD+DKLA       R L+ 
Sbjct: 439 TETAVCNLASIGLPRFVREKGVPMESHPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + +E AK+SN  HR IG+G+ G      LL +P+ S EA ++  +  E I +HA
Sbjct: 499 IIDTNYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS E+A + G Y ++ GS   +G+   D   ++           + R  W +L++ + 
Sbjct: 559 LKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP----------SDRWNWSDLREMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + + + Y DGS+  I  IPDDLK I+ T +EI    +++ A  R  +IDQ+QSLN
Sbjct: 669 IWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMAIDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 729 IHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|114635717|ref|XP_001159515.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 1
           [Pan troglodytes]
          Length = 779

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 9   IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 68

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 69  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 115

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 116 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 172

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 173 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 232

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 233 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 292

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 293 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 352

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 353 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 407

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 408 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 467

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 468 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 527

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 528 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 577

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 578 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 637

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 638 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 697

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 698 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 739


>gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Nomascus leucogenys]
          Length = 792

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 445/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Cuz20]
          Length = 788

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632
           N +   AN     D           K+A   +TAV                  RV+    
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
              DNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma
           linguale DSM 74]
 gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma
           linguale DSM 74]
          Length = 826

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/783 (37%), Positives = 444/783 (56%), Gaps = 41/783 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   S    ++   +E+ C GL    V    V  +    +YDG+  ++L+     
Sbjct: 3   VVKRDGRRESVKFDKITARIEKLCYGLDPAYVQPVEVAVKVVSGLYDGVKTTELDNLAAE 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++  K P+YA + AR  +  L +E   +     +K   +E             + G 
Sbjct: 63  TAASMTTKHPDYAILAARIAISNLHKETNKSFSGTIKKLYQYEDP-----------KTGE 111

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            A L+ + + D        L + + Y+RD+ ++Y G + L   Y L ++G   E PQ   
Sbjct: 112 NASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYFGYKTLEKSYLLKLDGRIAERPQHML 171

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ E    A+E YNLLS   F  +TPTLFN+GT  PQ+SSCFL T+ DD +
Sbjct: 172 MRVAVGIHQEDIES---AIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSI 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A +++ +GG+G     VR  G +I GTNG S G++P L+V NDTA  V+Q
Sbjct: 229 DGIYDTLKQTAKISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYVDQ 288

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKG+   YLE WH D+ +FLDL+KN+G +  R  D+  A W PDLFMKRV  +  W
Sbjct: 289 GGGKRKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVW 348

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P E   L D YG EFE  Y  YER+      +  R I A  LW K+L    ETG P
Sbjct: 349 SLFCPHECPGLADCYGDEFEELYTRYEREG-----RARRTIKAQELWFKILESQTETGTP 403

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----- 614
           ++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L            
Sbjct: 404 YMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDGIM 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           +FD+ KL    +TA R L+ +IDIN + +E+A++SN  HR IGLG+ G   A  +L +P+
Sbjct: 464 RFDHQKLYEVTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  + ++  E I F A+++S+E A+E G Y ++KGS   QG+F  D  G+      
Sbjct: 524 ESEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                +++R  W+ L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 -----KSNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+ +L +  LW++AM ++L   +GSI  I  IP ++K ++ T +EI   
Sbjct: 635 LSGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIKQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +I Q+QSLN+++ + +  KL  ++  AW  GLKT  YYLR+++A    K
Sbjct: 695 HIIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVK 754

Query: 914 STL 916
            T+
Sbjct: 755 FTV 757


>gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori 51]
          Length = 788

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/829 (38%), Positives = 452/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVL---- 632
           N +   AN     D           K+A   +TAV                  RV+    
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521

Query: 633 ---DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
              DNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|311263375|ref|XP_003129662.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Sus scrofa]
          Length = 793

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/762 (37%), Positives = 446/762 (58%), Gaps = 40/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ L+      YI    G  + ++  S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLF-----NYINPHNGKHSPMVARSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L I+G   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE+   +G ++  + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYERYEKNR-KGHVR--KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 422

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 423 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKI 482

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 483 IDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGAL 542

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 543 EASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 592

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 593 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 652

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 653 WNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 712

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 713 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 754


>gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/802 (36%), Positives = 442/802 (55%), Gaps = 61/802 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  L    P+YA + AR  +  L        +K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAALTANHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFE 294
            +K+    ++ +Y      +I E  G+KA L+ + + +    +   L +++ Y+RDF ++
Sbjct: 90  TKKSFSETVKDMY-----NHISERSGLKAPLISDEVYEIIMKNAARLDSEIIYDRDFDYD 144

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           Y G + L   Y L ING+ +E PQ   MRV++G+   + E    A++ Y+L+S   F  +
Sbjct: 145 YFGFKTLERSYLLKINGNVVERPQHMLMRVSVGIHKDDIES---AIKTYHLMSQRWFTHA 201

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +PTLFN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +RG G++
Sbjct: 202 SPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRGTGSY 261

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           I GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLD+RKN G +
Sbjct: 262 IRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDMRKNHGKE 321

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  D+  A W+PDLFM+RV  N  W+LF P E   L D +G++FE  Y  YER+    
Sbjct: 322 EHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGEDFEKLYTKYEREG--- 378

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             K  + + A  LW ++L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +
Sbjct: 379 --KAKKVVQAQNLWFEILKSQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEYT 436

Query: 593 SSEETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVL 632
           S  ETAVCNL SI L  +                      N  FD+ KLA         L
Sbjct: 437 SPTETAVCNLASIALPRYVREKEVPDESQPSKLVGSRGSKNRYFDFAKLAEVTALVTTNL 496

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + +E AK+SN  HR IGLG+ G      LL + + SPEA ++  +  E I +
Sbjct: 497 NKIIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFILLGMSFDSPEAQQLNKDIFETIYY 556

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           HA+ AS ELA + G Y ++ GS   +G+   D  G+            + R  W  L+  
Sbjct: 557 HALKASSELAAKEGPYETYAGSPVSKGILQPDMWGVTP----------SDRWDWGVLRGM 606

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +
Sbjct: 607 IAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTE 666

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW   + + + Y DGS+  I  IP DLK I+ T +EI    L++ A  R  +IDQ+QS
Sbjct: 667 MGLWSPTLKNRIIYDDGSVQKIPEIPQDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQS 726

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+      L   P T  
Sbjct: 727 LNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRSRAAADAIKFTVD--TSMLKEKPQTAV 784

Query: 932 NSSTHSLGIPSSCTSDTECEVC 953
           +  T    +  S ++  EC  C
Sbjct: 785 DDDTKMAQMVCSLSNRDECMAC 806


>gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis
           T2Bo]
 gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis]
          Length = 838

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/757 (39%), Positives = 426/757 (56%), Gaps = 53/757 (7%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR----- 230
           V +  V       MY G+  S L+     +   +    P+Y+K+ AR +++ L +     
Sbjct: 60  VDAPRVTQSVINGMYSGIRTSQLDELAAQTCAYMAATHPDYSKLAARIVVDNLHKNTLDN 119

Query: 231 --EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDL 285
             +V+T ++K                   +YI +   A L+ E + DF   ++  +  ++
Sbjct: 120 YADVITALFKY------------------KYIYDS-NASLISEEVYDFIMANIDRINAEI 160

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            Y RDF ++Y GL+ L   Y L IN   +E PQ   MRV+ G+   + E   R ++ Y+L
Sbjct: 161 DYSRDFQYDYFGLKTLERSYLLRINDKIVERPQHMLMRVSAGIHTGDIE---RTIQTYHL 217

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404
           +S  +F  +TPTLF SGT  PQ+SSCFL  + DD L GIF  L + A ++K +GG+G   
Sbjct: 218 MSQKYFTHATPTLFFSGTPRPQMSSCFLLDMKDDSLAGIFETLTQCAFISKCAGGIGLAC 277

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
             +R  GA+I GTNGKS G++P L++ N TA  V+QGG KRKG+   YLE WH D+ +FL
Sbjct: 278 HKIRASGAYIRGTNGKSNGLVPMLRIFNSTARYVDQGGGKRKGSFAIYLEPWHADIMDFL 337

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DLRKN G +  R  D+  A WIPDLFMKRV  N  WTL  PDE   L+D++G EFE  Y 
Sbjct: 338 DLRKNHGAEEARARDLFYALWIPDLFMKRVESNGDWTLMCPDECRGLYDVWGDEFEALYT 397

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            YE +       + RK I A  LW  +L    ETG+P++ +KD CN +S QQ++G + SS
Sbjct: 398 KYEMEG------LGRKTIPAQTLWFAILQSQIETGNPFMLYKDACNAKSNQQNLGTIKSS 451

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           NLC EI   +S EE AVCNL SI L  +    N  +D+ KL    R     L+ VID N 
Sbjct: 452 NLCCEIVQYTSPEEVAVCNLASIALPMYVDKENKTYDFKKLYDVARVITYNLNKVIDRNY 511

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +AK SNH HR IG+G+ G      L+  P+ S EA E+     E I +  +  S+ 
Sbjct: 512 YPVPEAKVSNHRHRPIGVGVQGLADTFMLMRYPFESEEAKELNRRIFETIYYGCLDESIS 571

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA++ G Y S+ GS   QG    D  G  A V ++L         WD LK+R+   G+RN
Sbjct: 572 LAEKYGTYESYPGSPASQGKLQFDLWG--ATVDNKL-------WDWDGLKQRMAKHGLRN 622

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ + I G ++S +P   N+Y +  +SG+F VVN  L+ +L    LWD+AM
Sbjct: 623 SLFLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLRDLVDLGLWDDAM 682

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              L  ++GS+ +IE IP  +K ++ T +EI    +I+ A+ R  +IDQ+QSLN+YLD+P
Sbjct: 683 KEKLIAYNGSLRHIEGIPQHIKDLYKTVWEIKQKSIIDMAADRGIFIDQSQSLNIYLDQP 742

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +  KL  ++   W  GLKT TYYLR+++AT   K T+
Sbjct: 743 TFGKLTSMHFYGWKKGLKTGTYYLRTQAATDAIKFTV 779


>gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
 gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
          Length = 814

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 287/738 (38%), Positives = 433/738 (58%), Gaps = 36/738 (4%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +YDG++ S+L+      + T+    P+YAK+ AR  +  L        +K  +K+   
Sbjct: 44  EGLYDGVTTSELDNLAAEIAATMTTTHPDYAKLAARISVSNL--------HKNTKKSFSE 95

Query: 247 EMQCLYPEYFCRYI--EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQIL 301
            M  LY     +Y+    G KA LL + + D    +   L + + Y RDF +++ G + L
Sbjct: 96  TMTDLY-----KYVNPRTGKKAPLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFKTL 150

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L +NG  +E PQ   MRV++G+ L++ E    A+E Y L+S  +F  +TPTLFNS
Sbjct: 151 ERSYLLKLNGVIVERPQHMLMRVSIGIHLEDIEA---ALETYELMSKRYFTHATPTLFNS 207

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQ+SSCFL T+ DD + GI+  L++ A +++ +GG+G     VR  G++I GTNG 
Sbjct: 208 GTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGT 267

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V NDTA  V+QGG KRKG+   Y+E WH D+ +FL+L+KN G +  R  D+
Sbjct: 268 SNGIVPMLRVFNDTARYVDQGGGKRKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDL 327

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A W PDLFMKRV +NA WTL  P+E  DL++++G EF+  Y  YE +  RG     R 
Sbjct: 328 FYAMWTPDLFMKRVEENADWTLMCPNECPDLYNVHGDEFDAMYLKYESEG-RGR----RT 382

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW K+L    ETG P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AV
Sbjct: 383 IKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAV 442

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL SI L     +  FD+  L        + L+ VID N + + +A+ SN  HR +GLG
Sbjct: 443 CNLASIALPMFVKDGAFDHQALYDVTVRVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLG 502

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G   A  +L +P+ S EA ++  E  E + F A++AS E A+  G Y ++KGS    G
Sbjct: 503 VQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIANG 562

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F  +  G    ++DE     + R  W  L+K VK  G+RNS  +A  PTA+ + I G +
Sbjct: 563 EFQHNLWG----IKDE---ELSGRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNN 615

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +  +P   N+Y +  +SG+F VVN  L+ +L  R LW+E M  +L  ++GS+ +IE IP+
Sbjct: 616 ECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPE 675

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ T +E+    +I+ + +R  +IDQ+QSLNL+++  +  KL  ++   W  GLKT
Sbjct: 676 DLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKT 735

Query: 900 -TYYLRSRSATSVEKSTL 916
             YYLR++SA    K TL
Sbjct: 736 GMYYLRTKSAVDAIKFTL 753


>gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit [Ascaris suum]
          Length = 790

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/815 (36%), Positives = 446/815 (54%), Gaps = 67/815 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSE 195
           P   ++  DG     +  ++   +E+ C GL        +VS K++       ++ G+S 
Sbjct: 9   PSTYVVKRDGRREGVHFDKIAHRIEKLCYGLNPDYVDYIEVSQKVI-----AGLFKGVST 63

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR-------EVLTTVYKKPQKATHHEM 248
             L+     ++  +  K P+YA + AR  +  L +       EV T +Y       HH  
Sbjct: 64  VQLDNLAAETAADMTTKHPDYAILAARIAISNLHKQTKKMFSEVATVLYN-----AHHP- 117

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305
                       + GV   ++ + + D  +     L + + ++RDF+F Y G + L   Y
Sbjct: 118 ------------KTGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFKTLERSY 165

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L +NG  +E PQ  FMRVA+G+  ++ +    A+E YNL+S   F  +TPTLFNSGTR 
Sbjct: 166 LLKMNGEPVERPQHLFMRVAVGIHKEDIDA---AIETYNLMSERWFTHATPTLFNSGTRL 222

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL T+ +D + GIF  L++ A+++K +GG+G +   +R  G+ I GT+G S G+
Sbjct: 223 PQMSSCFLLTMQEDSIEGIFDTLKKCALISKSAGGIGLNVHCIRATGSSIAGTSGVSNGL 282

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V N+TA  V+QGG KR GA   YLE WH D+ E+LDLRKN GD+  R  D+    
Sbjct: 283 VPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGL 342

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFM+RV  N  W+L  P E   L D +G EFE  Y  YE      E +  ++I A 
Sbjct: 343 WVPDLFMQRVRDNGKWSLMCPAECRGLEDCWGDEFEKLYSKYE-----AEGRYRKQIEAR 397

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  ++T   ETG P++ +KD CN +S QQ+VG +  SNLCTEI   SS  E AVCNL 
Sbjct: 398 RLWEAIITAQIETGVPYMVYKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLA 457

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L       + FD+ KL    +   R L+ +ID N + + +AK SN  HR IG+G+ G
Sbjct: 458 SIALNRFVTTEKTFDFKKLHEVTKVVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQG 517

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              A  L+  P+ S  A E+     E I   A+ AS ELA++ G Y S++GS   +G+  
Sbjct: 518 LADAFMLMRYPFTSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPISKGILQ 577

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T +  WD L+  +   G+RNS  +A  PTA+ A I G ++SI
Sbjct: 578 QDMWGV----------EPTDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESI 627

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y ++ +SG+F + N  L+ +L    LWD+ M  ++  H GS+  IERIP +++
Sbjct: 628 EPYTSNVYTRNVLSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIR 687

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            ++ T +E+    +I+ A+ R  +IDQ+QSLN+++ +PS      ++   W  GLKT  Y
Sbjct: 688 NLYKTVWELSQKDIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMY 747

Query: 902 YLRSRSAT-----SVEKSTLKGVDGKLNAVPVTDP 931
           YLR+R A      +V+K+ LK V+ K+    ++DP
Sbjct: 748 YLRTRPAVDAVQFTVDKTRLKEVNAKMLECALSDP 782


>gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens]
          Length = 762

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 15  QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 67  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + 
Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +
Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G 
Sbjct: 534 GILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 704 TGMYYLRTRPAANPIQFTL 722


>gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 817

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/765 (37%), Positives = 430/765 (56%), Gaps = 58/765 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ ++     R    G+K+ L+ + + D    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKDMFNHVNDR---SGLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G+ +E PQ   MRVA+G+   + +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---AIQTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG--KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           GTNG S G++P L+V NDTA  V+QGG  +++GA   YLE WH DV EFL+LRKN G + 
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEE 323

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+     
Sbjct: 324 HRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG---- 379

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            K  + + A  LW ++LT   ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S
Sbjct: 380 -KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTS 438

Query: 594 SEETAVCNLGSINLLAHFA---------------------NNQFDYDKLASTIRTAVRVL 632
             ETAVCNL SI  L  F                      N  FD+DKLA    T    L
Sbjct: 439 PTETAVCNLASI-ALPRFVREKGVPLDSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + +E AK SN  HR IG+G+ G   A  LL +P+ SPEA ++  +  E I +
Sbjct: 498 NKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYY 557

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           HA+ AS ELA   G Y ++ GS   +G+   D   ++           ++R  W  L+  
Sbjct: 558 HALKASSELAARVGPYETYSGSPVSKGILQPDMWNVIP----------SNRWDWAVLRDM 607

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L  
Sbjct: 608 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTD 667

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW   + + L   +GSI N+  IPDDLK I+ T +EI    +++ A  R  +IDQ+QS
Sbjct: 668 MGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAVDRGCYIDQSQS 727

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+
Sbjct: 728 LNIHMDKPNFAKLTSLHFYAWTKGLKTGMYYLRSRAAADAIKFTV 772


>gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4]
 gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4]
          Length = 752

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 44/761 (5%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           ++R EM+ +    GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK
Sbjct: 19  TRRAEMLAD----GLK-VEPIAVAQRVVSGLYDGIKATEIDVFLAETAASLATEHPDYAK 73

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR ++  L++E         + +    +   Y  +  R        +L  E M+D   
Sbjct: 74  LAARVMVSSLQKETNGYAAATSELSEIGILSDAYVNFVAR-------NQLALEDMID--- 123

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
                   Y+RD+ F+Y G + L   Y L + G+ +E PQ  FMRVA+ +A  + E+ + 
Sbjct: 124 --------YKRDYQFDYFGYKTLERSYLLKVKGAVVERPQDMFMRVAVVVAGDDLEEIR- 174

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
             E Y+LLS  ++  +TPTLFN+G +  QLSSCFL  + +D + GI+  L++ A+++K +
Sbjct: 175 --ELYDLLSLGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSIDGIYDTLKDCALISKSA 232

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G     +R  GA I GTNG S G+IP LKV N+TA  V+QGG KRKG+   YLE WH
Sbjct: 233 GGIGLHIHNIRATGAPIIGTNGVSNGIIPMLKVFNETARYVDQGGGKRKGSFAVYLEPWH 292

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+E FLDLRKN G +  R  D+  A W+PDLFM+RV  +A WTLFSP    DL +LYG 
Sbjct: 293 ADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLFSPHNTKDLSELYGS 352

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF   Y+ YER          + I A  L  K++    ETG P++ +KD CN +S Q+++
Sbjct: 353 EFNRKYQEYERIG-----LGVKTIKARQLMTKIIESQTETGTPYMLYKDACNEKSNQKNL 407

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G + SSNLC EI   S+ +ETA CNL S+ L     +  FD++KL    + A++ LD VI
Sbjct: 408 GTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVTDTGFDFEKLHQVTKVAIKNLDRVI 467

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N H   K +KSNH HR +GLG+ G       +H+P+ S EA+ +  +  E +   ++ 
Sbjct: 468 DVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHLNRDIAETMYHASLE 527

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS E+A+++G YSS+ GS   QG+F  D  G             +SR  W +LK ++   
Sbjct: 528 ASCEIAKQKGTYSSYDGSPISQGLFQFDLWG----------KQPSSRWDWSQLKLKIAEH 577

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G +++ +    NLY +  +SG+F ++N  LV +L++  LW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIILNKHLVRDLEKNGLW 637

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              +   +  ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ R  ++ Q+QSLNL+
Sbjct: 638 TSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAERAPFVCQSQSLNLW 697

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           L  P+  +++ ++  AW  GLKT  YYLRS+ + +  K T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTV 738


>gi|114635719|ref|XP_001159937.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 3
           [Pan troglodytes]
          Length = 752

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 5   QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 56

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 57  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 111

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 112 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 168

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 169 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 228

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 229 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 288

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + 
Sbjct: 289 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 343

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 344 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 403

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 404 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 463

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +
Sbjct: 464 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 523

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G 
Sbjct: 524 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 573

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 574 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 633

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 634 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 693

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 694 TGMYYLRTRPAANPIQFTL 712


>gi|332835621|ref|XP_003312921.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Pan
           troglodytes]
          Length = 762

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 15  QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 67  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + 
Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +
Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G 
Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 644 DDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 704 TGMYYLRTRPAANPIQFTL 722


>gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii]
 gi|75041664|sp|Q5R919|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii]
          Length = 792

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/762 (37%), Positives = 446/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKEA--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  S+LCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 846

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/738 (38%), Positives = 427/738 (57%), Gaps = 41/738 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T     S TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLAAEISATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L +E         +K     M+ LY      Y+    +      S    D+V    
Sbjct: 82  AVSNLHKET--------KKVFSEVMEDLY-----NYVNPLNRCHSPMVSKETLDIVLQNR 128

Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
           D     + Y+RDF++ + G + L   Y L ING   E PQ   MRV++G+   + +    
Sbjct: 129 DRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHQNDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGHSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  PDE   L++ +G+
Sbjct: 306 FDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMCPDECPGLNECWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE++      +V R + A  +W  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYTSYEKEG-----RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNV 635
           G + SSNLCTEI   +SS+E AVCNL SI L  +      FD+ KLA+  +  VR L+ +
Sbjct: 421 GTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTPECTFDFHKLAAVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+
Sbjct: 481 IDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQIFETIYYAAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA E G Y S++GS   +GV   D  G             T    W +LK+R+  
Sbjct: 541 EASCQLAAELGPYESYEGSPVSKGVLQYDMWG----------KTPTELWDWQQLKERIAR 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+    N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 HGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + L  H+GS+ NI+ IP+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N+
Sbjct: 651 WNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTVIKMAADRGAFIDQSQSMNI 710

Query: 876 YLDEPSGKKLDFIYRQAW 893
           ++ EP+  KL  ++   W
Sbjct: 711 HIAEPNYGKLTSMHFYGW 728


>gi|296217188|ref|XP_002754896.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Callithrix jacchus]
          Length = 762

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/739 (38%), Positives = 436/739 (58%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 15  QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 67  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +V + 
Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-----RVRKV 353

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413

Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 414 CNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G Y +++GS   +
Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSR 533

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G 
Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 644 DDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 704 TGMYYLRTRPAANPIQFTL 722


>gi|332211479|ref|XP_003254846.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Nomascus leucogenys]
          Length = 762

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/739 (38%), Positives = 435/739 (58%), Gaps = 40/739 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 15  QGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 66

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQIL 301
            M+ LY      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G + L
Sbjct: 67  VMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTL 121

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
              Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+
Sbjct: 122 ERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNA 178

Query: 362 GTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG 
Sbjct: 179 GTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGN 238

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+
Sbjct: 239 SNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDL 298

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + 
Sbjct: 299 FFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKV 353

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AV
Sbjct: 354 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 413

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+
Sbjct: 414 CNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGI 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +
Sbjct: 474 GVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSK 533

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G 
Sbjct: 534 GILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGN 583

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IP
Sbjct: 584 NESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIP 643

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 644 DDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 703

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+R A +  + TL
Sbjct: 704 TGMYYLRTRPAANPIQFTL 722


>gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae]
 gi|187031585|emb|CAP29649.1| CBR-RNR-1 protein [Caenorhabditis briggsae AF16]
          Length = 790

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/735 (38%), Positives = 430/735 (58%), Gaps = 36/735 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     ++ ++  + P YA + AR  +  L        +KK  K     M
Sbjct: 53  LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
           + L+ E+   +   G  A ++ +   +    +   L + + Y+RD+++ Y G + L   Y
Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   +E PQ   MRVA+G+  K+      A+E YNL+S  +   ++PTLFNSGT  
Sbjct: 162 LLKINKEVVERPQQMLMRVAIGIHGKDISA---AIETYNLMSERYMTHASPTLFNSGTCR 218

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL T+ +D + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+
Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V N+TA  V+QGG KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A 
Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLAL 338

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV ++  W+L  P E   L D +G+EFE  Y  YE      E +V + + A 
Sbjct: 339 WVPDLFMKRVEKDQDWSLMCPCECPGLDDCWGEEFETLYAKYE-----AEGRVRKTVKAR 393

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +++   ETG P+IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL 
Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLA 453

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L     N++ FD+ KLA   +   + L+ +ID+N + IE+A+ SN  HR IGLG+ G
Sbjct: 454 SIALNRFVTNDKKFDFVKLAEVTKVITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQG 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                 L+  P+ SP+A ++     E I + A+ AS ELA+  G YS+++GS   +G   
Sbjct: 514 LADCFMLMRYPFTSPQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQ 573

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T++  WDEL+K++   G+RNS  MA  PTA+ A I G ++SI
Sbjct: 574 FDMWGVTP----------TNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESI 623

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  +SGDF +VN  ++ +L +R LW + M + L  ++GSI NI  IPDD+K
Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIK 683

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
           +++ T +EI    +IE A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  Y
Sbjct: 684 ELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMY 743

Query: 902 YLRSRSATSVEKSTL 916
           YLR++ A +  + T+
Sbjct: 744 YLRTKPAVNAVQFTV 758


>gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
 gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
          Length = 825

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 300/797 (37%), Positives = 450/797 (56%), Gaps = 35/797 (4%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
           LI F+  ++   V + C GL  +   + V     + +YDG++ S+L+      + T+   
Sbjct: 12  LIMFD--KITARVRKLCYGLNGLVDPLKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTT 69

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P+YAK+ AR  +  L        +K  +K+    M+ LY     R    G KA LL + 
Sbjct: 70  HPDYAKLAARISVSNL--------HKNTKKSFSETMEDLYTYVNPR---TGKKAPLLSDE 118

Query: 273 MMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
           +      + V L + + Y RDF ++Y G + L   Y L +NG   E PQ   MRV++G+ 
Sbjct: 119 VYKVIAENSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIH 178

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQ 388
           L + +  K   E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L+
Sbjct: 179 LDDLDAVK---ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLK 235

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGA 447
           + A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+
Sbjct: 236 QTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGGGKRKGS 295

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              Y+E WH D+ EFL+L+KN G +  R  D+  A WI DLFMKRV  N  WTL  P+E 
Sbjct: 296 FAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTLMCPNEC 355

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L   + +EFE  Y  YE      E K  + + A  LW K+L    ETG P++ +KD  
Sbjct: 356 PGLFTNHSEEFEKLYLKYE-----SENKGRKTVRARELWEKILESQIETGTPYMLYKDAA 410

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L    + 
Sbjct: 411 NRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKELFRVTKR 470

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
             + L+ VID N + +++A+ SN  HR IGLG+ G   A  LL +P+ S EA ++  E  
Sbjct: 471 VTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKKLNQEIF 530

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E + F A++AS+E A+E G YSS+ GS   QG F  +  G    ++DE     + R  W 
Sbjct: 531 ETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWG----IKDE---ELSGRWDWT 583

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+
Sbjct: 584 KLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 643

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L    +W+E M  +L   +GSI +IE IP D++ ++ T +E+    +I+ +  R  +I
Sbjct: 644 EDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRHRGYFI 703

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV 926
           DQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL     K   V
Sbjct: 704 DQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSKKKEEPV 763

Query: 927 PVTDPNSSTHSLGIPSS 943
               P ++T + G+ ++
Sbjct: 764 EAEVPLAATPAPGVANA 780


>gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis]
          Length = 810

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/762 (37%), Positives = 437/762 (57%), Gaps = 55/762 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++ +L    P+YA + AR  +  L +  L +  + 
Sbjct: 38  LVAQKVTTGVYKGVTTSELDELAAETAASLTATHPDYALLAARIAVSNLHKNTLKSFSET 97

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYL 296
            +    H    + P+        G KA L+ E + +  + +   L +++ Y+RDF ++Y 
Sbjct: 98  VKLMFSH----VNPK-------NGEKAPLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRVA+G+ L++ +    AVE Y+LLS   F  ++P
Sbjct: 147 GFKTLERSYMLRVNGRVVERPQHMLMRVAVGIHLEDVDA---AVETYHLLSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A ++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKNDSIEGIYDTLKECASISKSAGGIGLSMHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   Y E WH D+ ++LDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAMYCEPWHADIFDWLDLRKNHGKEEA 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM RV  N  W+LF P+E   L D +G+EFE  Y  YER+      
Sbjct: 324 RARDLFYALWIPDLFMHRVEANGEWSLFCPNESPGLADCWGEEFEALYSRYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  + I A  LW  +L    ETG+P++ +KD  N +S QQ++G + SSNLCTEI   SS 
Sbjct: 379 RARKVIKAQQLWFAILEAQVETGNPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEYSSP 438

Query: 595 EETAVCNLGSINLLAHFANNQ-------------------FDYDKLASTIRTAVRVLDNV 635
           EETAVCNL S+ L       +                   FD+DKLA     A R L+ +
Sbjct: 439 EETAVCNLASVALPRFVREKEPSGREGKKLVGSLDAEGRYFDFDKLAEVTAVATRNLNKI 498

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID+N + +E A++SN  HR IGLG+ G      LL +P+ SPEA E+  +  E I F A+
Sbjct: 499 IDVNYYPVETARRSNMRHRPIGLGVQGLADTFLLLGLPFDSPEAAELNRQIFETIYFAAL 558

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S++L++  G YS+++GS   +G+   D  G+            + R  WD L++ +  
Sbjct: 559 RTSMQLSKAEGPYSTYEGSPVSKGILQPDMWGV----------KPSDRWDWDGLRRDIAQ 608

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN  L+++L +  L
Sbjct: 609 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFVVVNQHLLHDLTRLGL 668

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD  + +++    GS+ +++ IP++LK+++ T +EI    L++ A+ R  +IDQ+QS N+
Sbjct: 669 WDTDVKNEIVAASGSVADLD-IPNNLKELYKTVWEIKQRVLVDMAADRGAFIDQSQSFNV 727

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ +P+  KL  ++  AW  GLKT  YYLRSR+A    K T+
Sbjct: 728 HMSDPNFGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTV 769


>gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb03]
          Length = 797

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/803 (36%), Positives = 446/803 (55%), Gaps = 44/803 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++      KK   +   ++      Y     + G  A ++ +S  +  + +   
Sbjct: 82  AVSNLHKQT-----KKQFSSVIDDL------YHYHNPKNGRPAPMISQSTYEIVMRHADE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
             + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   + E   R +
Sbjct: 131 FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDDVE---RVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D
Sbjct: 248 IGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHMD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG EF
Sbjct: 308 IFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE++  RG+    + I A  LW  +L    ETG+P++ +KD CN +S Q+++G 
Sbjct: 368 EALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  VR L+ +I
Sbjct: 423 IRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNRII 482

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E I    ++
Sbjct: 483 DRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLT 542

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+  G YSS++GS   QG+   D  G+            T    WD LK+ +   
Sbjct: 543 ASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDSLKQEIAKH 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L    LW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN++
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTD 930
           L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  +  V    
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARVNGAM 772

Query: 931 PNSSTHSLGIPSSCTSDTECEVC 953
              +  S    SS  +   C +C
Sbjct: 773 KKRAAVSASYTSSIENPESCLMC 795


>gi|312889902|ref|ZP_07749446.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
 gi|311297434|gb|EFQ74559.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
          Length = 792

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 300/824 (36%), Positives = 456/824 (55%), Gaps = 53/824 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   +    ++   +E+ C GL        DVS K+V     + +YDG++ S+L+
Sbjct: 3   VIKRDGKKETVKFDKITARIEKLCYGLNPSLVDPIDVSKKVV-----EGLYDGVTTSELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ +L  K P+YA + +R  +  L +  +        K+    M+ LY      Y
Sbjct: 58  NLAAETAASLTTKHPDYALLASRIAVSNLHKNTI--------KSFSETMRNLY-----LY 104

Query: 260 IEE--GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
            ++  G  A L+ + +   ++ +   L + + Y+RDF F+Y G + L   Y L I+G   
Sbjct: 105 TDKKTGKNASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFKTLEKSYLLKIDGKIA 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRV++G+     E     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL 
Sbjct: 165 ERPQHLFMRVSVGI---HKEDIDSVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLL 221

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP LKV ND
Sbjct: 222 TMQDDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIIPMLKVFND 281

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WI DLFM+R
Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQR 341

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W+LF P E   LH+ +GKEFE  Y  YE      E +  + I A  LW  +L  
Sbjct: 342 VEEDGQWSLFCPHEAPGLHECWGKEFEALYTKYE-----AEGRARKTIRAQELWFAILDA 396

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +  
Sbjct: 397 QVETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYIT 456

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+ KL          L+ +ID N + + +A  SN  HR IGLG+ G       L +
Sbjct: 457 AGVFDHQKLYEVTYQVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRL 516

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA ++  E  E I F A++AS +LA + G Y +FKGS   QG F  D   +  + 
Sbjct: 517 PFESDEAKKLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPD- 575

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W++L+  V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 576 --------SGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN +L+++L +  LW+  M + +   +GS+ +I  IP ++K+++ T +EI 
Sbjct: 628 RVLSGEFVVVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIK 687

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  ++ Q+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A+  
Sbjct: 688 MRTIIDMAADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS--CTSDTECEVC 953
            K T++   GK +  PV   N       IP    C+ +  C  C
Sbjct: 748 VKFTIESQGGK-SMEPVIPENGVAVVDEIPDGPVCSMEEGCVTC 790


>gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 791

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 312/832 (37%), Positives = 440/832 (52%), Gaps = 125/832 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTSEAVAGLDNVSLSELEVDAKIQFRDNITTEEIQQTLIK 60

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+   PN+  V AR  L           Y    K T         EYF    E+G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFL-----------YDLYHKTTGFSGYNSLKEYF----EKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +   N   IE+PQ  F
Sbjct: 106 EKNGRILLGLKEKYDLEDLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDSQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR++QN  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  DL DLYG EFE  Y  YE+     +  +  K     LW+K+LT  FETG P++
Sbjct: 346 FDPADTPDLCDLYGDEFEKRYIEYEKDPHIAKSSMLAK----ELWKKILTNYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEETAV-- 599
            FKD  N  +P  H G++ SSNLCTEI  N+                     SE+  V  
Sbjct: 402 CFKDNANRANPNAHKGIIRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDG 461

Query: 600 ----------------------------------CNLGSINLLAHFANNQFDYDKLASTI 625
                                             CNL SINL     N++ D   +A  +
Sbjct: 462 GYTKKAKKITALDRLDNKDIFIVEKGIKEGKTAVCNLASINLSK--INSKED---IARVV 516

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVID+N +   K K +N   R+IGLG+MG    L    I + S E +E  DE
Sbjct: 517 PIAIRMLDNVIDLNFYPHAKVKHTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDE 576

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----- 740
            ME IS++AI AS  LA E+GAY  F+GS W +G+FPID    +A    +  +NR     
Sbjct: 577 VMENISYNAIYASSNLAVEKGAYPDFEGSNWSKGIFPID----MANKNAKALINRGGLFD 632

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W++L+ +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   
Sbjct: 633 QNSCDWEKLRAKVKEGGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIP 692

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V   L  E  Q                                +  A+E+D   +I++ 
Sbjct: 693 SVVPNLNTETWQ-------------------------------FYTPAYELDQKLIIKAG 721

Query: 861 SRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + RQKWIDQ QSLN++  LD+ SG+ L  IY  AW +G+K+TYYLRS S  S
Sbjct: 722 AVRQKWIDQGQSLNIFMSLDKASGRYLSEIYTLAWELGVKSTYYLRSESPDS 773


>gi|15227096|ref|NP_179770.1| RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding /
           ribonucleoside-diphosphate reductase [Arabidopsis
           thaliana]
 gi|56749666|sp|Q9SJ20|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase R1
           subunit; Short=AtRNR1
 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
           thaliana]
          Length = 816

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/763 (37%), Positives = 425/763 (55%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L +       KK
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTCNHPDYASLAARIAVSNLHKNT-----KK 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
               T  +M      ++      G+K+ L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 93  SFSETIKDM------FYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G+ +E PQ   MRVA+G+   + +     ++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHKDDIDS---VIQTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH DV EFL+LRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YER+      
Sbjct: 324 RARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++LT   ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L                         N  FD++KLA    T    L+ 
Sbjct: 439 TETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK SN  HR IG+G+ G   A  LL +P+ SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA   G Y ++ GS   +G+   D   ++           + R  W  L+  + 
Sbjct: 559 LKASTELAARLGPYETYAGSPVSKGILQPDMWNVIP----------SDRWDWAVLRDMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L    
Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + L   +GSI N+  IPDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 669 LWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+
Sbjct: 729 IHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTV 771


>gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
 gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
          Length = 912

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 301/801 (37%), Positives = 444/801 (55%), Gaps = 55/801 (6%)

Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDVDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            +  L ++      KK   A     +H +            +E  +  + H+  +D  +V
Sbjct: 82  AVSNLHKQT-----KKQWSAVVSDLYHYVNPKNERASPMIAKETYECVMRHKEELDSAIV 136

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           Y       +RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+     E   R 
Sbjct: 137 Y-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNVE---RV 186

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSG 398
           +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+ +L+  AM++K +G
Sbjct: 187 IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDSLKTCAMISKMAG 246

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457
           G+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH 
Sbjct: 247 GIGLNIHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 306

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D YG E
Sbjct: 307 DVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGLADCYGDE 366

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  YE YE+ A RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++G
Sbjct: 367 FEALYEKYEK-AGRGR----KTIKAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLG 421

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNV 635
            + SSNLCTEI   S+ +E AVCNL S+ L      NQ  +D+ KL    +  VR L+ +
Sbjct: 422 TIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDFQKLHEVAQVVVRNLNKI 481

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID+N + +++A  SN  HR IG+G+ G   A   L +P+ SPEA E+  +  E I   A+
Sbjct: 482 IDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQIFETIYHAAL 541

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS +LA+E+G YS+++GS   QG+   D   +            T    WD LK ++K 
Sbjct: 542 TASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTP----------TGLWDWDALKAKIKE 591

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    L
Sbjct: 592 HGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGL 651

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 652 WSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNI 711

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL--------KGVDG 921
           ++ EPS  K+  ++   W +GLKT  YYLR+++A      +V++  L        KGV G
Sbjct: 712 HMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEALRVQDTNVSKGVSG 771

Query: 922 -KLNAVPVTDPNSSTHSLGIP 941
            K  A P     SS  ++  P
Sbjct: 772 LKKRAPPAGSYMSSPSAVPRP 792


>gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 773

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/759 (38%), Positives = 433/759 (57%), Gaps = 45/759 (5%)

Query: 170 CSGLQDVSSKIVL--SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           C GL  V    VL   +  + ++DG++ S+L+      + +L  K P+YA + +R  +  
Sbjct: 26  CYGLDSVHIDPVLIAMKVIEGLFDGVTTSELDNLAAEVAASLTVKHPDYALLASRIAISN 85

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-----Y 280
           L+        K   K+    +  LY      YI+   G KA L+ E +  + +V      
Sbjct: 86  LQ--------KNTNKSFARTIGELY-----HYIDPKTGKKASLIAEDV--YKIVQNHAEI 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L   + Y+RDF ++Y G + L   Y L ING  IE PQ   MRV++G+   +      A+
Sbjct: 131 LDATMIYDRDFGYDYFGFKTLERSYLLKINGKVIERPQHLLMRVSIGIHKNDISA---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E Y+ +S   F  +TPTLFN+GT +PQ+SSCFL  V +D + GIF  L+  A +++ +GG
Sbjct: 188 ETYHWMSERWFTHATPTLFNAGTPYPQMSSCFLMQVKEDSIEGIFDTLKACAKISQAAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  G++I GT G S G+IP L+V NDTA  ++QGG KRKG+   YLE WH D
Sbjct: 248 IGLSIHNIRATGSYIRGTGGISNGIIPMLRVYNDTARYIDQGGGKRKGSFAIYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLDLRKN G +  R  D+ TA WIPDLFMKRV ++  W+LF P+E  +LH+ +G+EF
Sbjct: 308 IYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWSLFCPNEAPNLHECWGEEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++    E+     I A  LW K+L    ETG+P++ FKD CN +S Q+H+G 
Sbjct: 368 EHLYCLYEQEGKAREV-----IKAQDLWFKILESQIETGNPYMLFKDACNYKSNQKHLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +  SNLCTEI   +S  E AVCNL SI L     N  FD+ KL    +   R LD +ID 
Sbjct: 423 IKLSNLCTEIIEYTSPHEAAVCNLASIALPRFIINGHFDHQKLFEVTQVITRNLDKIIDE 482

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + I +A+ SN  HR IG+G+ G   A  LL +P+ S EA  +     E I F A++AS
Sbjct: 483 NSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSKEARALNQAIFETIYFGALTAS 542

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+++G Y S++GS   +G+   +   +            +S   W+ LK  +   G+
Sbjct: 543 KDLAKKKGRYPSYEGSPISKGILQYEMWNV----------KPSSNWDWEALKTEIAVHGI 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A+ PTA+ + I G ++  +P   NLY +  +SG+F VVN  L+ +L +R+LW+E
Sbjct: 593 RNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSGEFIVVNKHLMRDLVKRELWNE 652

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M   +   +GSI  IE IP ++K+++ T +EI    LI+ A+ R  +I Q+QSLNL+++
Sbjct: 653 EMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALIDMAADRGPFICQSQSLNLFVE 712

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            P+  KL  ++  AW  GLKT  YYLR ++A    K T+
Sbjct: 713 SPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTV 751


>gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
          Length = 789

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 303/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        + C Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLCEYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V +
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460

Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629
            G                  + ++  + N+                +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
 gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
          Length = 815

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/763 (36%), Positives = 432/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R    G+ A L+ E + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKDMYMHFNER---SGLMAPLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRV++G+  ++ E    A+  Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKEDIES---AIRTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G+EF+  Y+ YE Q      
Sbjct: 324 RARDLFYALWVPDLFMQRVQNNGEWSLFCPNEAPGLADCWGEEFDNLYKKYESQG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEFTSP 438

Query: 595 EETAVCNLGSINLL--------------------AHFANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L                     +   N  FD++KLA    T    L+ 
Sbjct: 439 NETAVCNLASIALPRFVREKGVPLESHPSKLVGSSDSKNRYFDFEKLAEVTSTVTYNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + +E AK+SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I +H+
Sbjct: 499 IIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHS 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA + G Y +++GS   +G+   D   ++           ++R  W  L++ + 
Sbjct: 559 LKASAELAAKEGPYETYEGSPVSKGILQPDMWDVVP----------SNRWNWPSLRETIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + + + Y DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 IWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++++ +  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 729 VHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii str. 17XNL]
 gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii]
          Length = 847

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 297/788 (37%), Positives = 434/788 (55%), Gaps = 52/788 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L +     + K  +       
Sbjct: 87  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAKVAE------- 139

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305
             LY     R    G  A L+ + + DF + +   L  ++ Y RDF ++Y G + L   Y
Sbjct: 140 -ALYSYKDIR----GRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  
Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G+
Sbjct: 252 PQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A 
Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAI 371

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P+E   L + +G+EFE  Y  YE + + G+    + + A 
Sbjct: 372 WVPDLFMKRVKENRNWTLMCPNECPGLSESWGEEFEKLYTKYEEE-NLGK----KTVLAQ 426

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL 
Sbjct: 427 DLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486

Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L         +FD+ KL    +   R LD +I+ N + I++A+KSN  HR IG+G+ 
Sbjct: 487 SIALCKFVDREKKEFDFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQ 546

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL  PY S EA E+     E + + A+  SVELAQ  G Y S+KGS   QG+ 
Sbjct: 547 GLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPASQGIL 606

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +  +              WD LKK++   G+RNS  +A  PTA+ + I G ++S
Sbjct: 607 QFDMWNVKVD---------NKYWDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNES 657

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP DL
Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADL 717

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  
Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777

Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945
           YYLR+++AT   K T           LK  DG      V+    ST S    ++C     
Sbjct: 778 YYLRTQAATDAIKFTVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRN 837

Query: 946 SDTECEVC 953
           +D  C +C
Sbjct: 838 NDEPCLMC 845


>gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera
           kw1407]
          Length = 913

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/759 (37%), Positives = 433/759 (57%), Gaps = 51/759 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + +    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDTEHIDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAVLAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V+T +Y    P+  T   M            +E     + H+   
Sbjct: 82  AVSNLHKQTKKQWSAVITDLYNYVNPRNNTLSPMIS----------KETYDCVMRHKE-- 129

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           DFD     + + Y+RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+     E
Sbjct: 130 DFD-----SAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNVE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R VE YN +S+  F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  AM+
Sbjct: 185 ---RVVETYNYMSNKFFTHASPTLFNAGTPQAQMSSCFLVDMKDDSIEGIYDTLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA C YL
Sbjct: 242 SKTAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQGGNKRPGAFCIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   + D
Sbjct: 302 EPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGMAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EFE  YE YER+  RG     + + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 CYGEEFEALYEKYEREG-RGR----KTVKAQKLWYAILEAQTETGNPFMLYKDHCNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   S+ +E AVCNL S+ L     + N  +D+ KL    +  VR
Sbjct: 417 QKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDFKKLHEVAQLVVR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L++VID+N + + +AK SN  HR IGLG+ G   A   L +P+ SPEA E+  +  E I
Sbjct: 477 NLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++AS ELA+  G YS+++GS   QG+   D    + +V+       +    WD L+
Sbjct: 537 YHAALTASCELAKIEGTYSTYEGSPVSQGILQPD----MWDVKP------SDLWDWDSLR 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 LKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           QSLN+++ EP+  K+  ++   W +GLKT  YYLR+++A
Sbjct: 707 QSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 745


>gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter
           heparinus DSM 2366]
 gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter
           heparinus DSM 2366]
          Length = 792

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/797 (37%), Positives = 451/797 (56%), Gaps = 51/797 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   +    ++   +E+ C G         DV+ K++     + +YDG++ S+L+
Sbjct: 3   VIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVI-----EGLYDGVTTSELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ +L  K P+YA + +R  +  L        +K   K+    M+ LY      Y
Sbjct: 58  NLAAETAASLTTKHPDYALLASRIAVSNL--------HKNTTKSFSKTMEMLY-----NY 104

Query: 260 IEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           ++   +  A L+ + + +    +   L + + Y+RDF F+Y G + L   Y L ++G  +
Sbjct: 105 VDSKTEKPASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFKTLEKSYLLKVDGQIV 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRVA+G+   + +    A+E YNL+S   F  +TPTLFN+ T  PQ+SSCFL 
Sbjct: 165 ERPQHLFMRVAVGIHKGDIDS---AIETYNLMSERWFTHATPTLFNAATPKPQMSSCFLL 221

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV ND
Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFND 281

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFM+R
Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRR 341

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +N  W+LF P E   L D +G+EF+  YE YE++      +  + I A  LW  +L  
Sbjct: 342 VEENGDWSLFCPHEAPGLADCFGEEFDALYERYEQEG-----RARKTIKAQELWFAILDS 396

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     
Sbjct: 397 QIETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVI 456

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N +FD+ KL      A   L+ +ID N + +E+A+ SN  HR +GLG+ G   A  L+ +
Sbjct: 457 NGEFDHQKLYDVTYQATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRL 516

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A  +  E  E I F A++AS +LA + G Y +FKGS   QG F  D    L +V
Sbjct: 517 PFESEGARILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFD----LWKV 572

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           + +     + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 573 QPD-----SGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI 
Sbjct: 628 RVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIK 687

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+  
Sbjct: 688 MRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747

Query: 912 EKSTLKGVDGKLNAVPV 928
            K T++   GK N  PV
Sbjct: 748 VKFTVENQAGK-NMEPV 763


>gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe 972h-]
 gi|1350600|sp|P36602|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe]
          Length = 811

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/762 (37%), Positives = 438/762 (57%), Gaps = 37/762 (4%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            +  L ++   V +TV ++     + +     P    +  +  +K    H+  +D  ++Y
Sbjct: 82  AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
                  +RDF + + G + L   Y L I+G   E PQ   MRVA+G+  ++ E    A+
Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L+  AM++K +GG
Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +R  G++I GTNG S G++P ++V N+TA  V+QGG KR GA  AYLE WH D
Sbjct: 248 IGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +FL+LRK  G++  R  +M  A WIPDLFM+RV +N  WT F P+E   L D++G EF
Sbjct: 308 VMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              YE YE++ +RG     R + A  +W  +L    ETG+P++ +KD CN +S Q++VG 
Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +  SNLCTEI   SS +E AVCNL S+ L     + ++++ KL   ++   R L+ +ID+
Sbjct: 423 IRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +A++SN  HR +GLG+ G   A   L +P+ S  A ++  +  E I   A+ AS
Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            E+AQ  G Y S++GS   QG+   D   +          N T    W ELK+++   G+
Sbjct: 543 CEIAQVEGTYESYEGSPASQGILQYDMWNV----------NPTDLWDWAELKEKIAKHGI 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L +RDLW+E
Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M + L   DGSI  I  IP DLK ++ T +EI    +I+ A+ R  +IDQ+QSLN++L 
Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754


>gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo
           sapiens]
          Length = 792

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/762 (37%), Positives = 443/762 (58%), Gaps = 42/762 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L  NG   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQHMLMRVSVGIHKEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +    I + A+
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFGTIYYGAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 651 WHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa]
 gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa]
          Length = 812

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/763 (37%), Positives = 432/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
             K+    ++ +Y  +  +    G+KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  THKSFSETIKIMYNHFNEK---SGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRVA+G+   + +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---ALKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH DV EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P E   L D +GKEFE  Y  YER       
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLADCWGKEFEELYTRYERDG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINL------------------LAHFANNQ--FDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L                  +    +N+  FD++KLA         L+ 
Sbjct: 439 TETAVCNLASIALPRFVREMGVPIESHPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E A++SN  HR IG+G+ G   A  LL + + SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETARRSNFRHRPIGIGVQGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS E+A   G Y ++ GS   +G+   D  G+            +S   WD L++ + 
Sbjct: 559 LKASSEIAAREGPYETYVGSPVSKGILQPDMWGVTP----------SSLWNWDALREMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW  A+ + + Y DGS+  I  I DDLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 LWSPALKNKIIYEDGSVQKIPEISDDLKCIYKTVWEIKQKTLVDMAVDRGCFIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++  AW  GLKT  YYLRS++A    K T+
Sbjct: 729 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAIKFTV 771


>gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
 gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
          Length = 803

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/761 (37%), Positives = 434/761 (57%), Gaps = 54/761 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           IV  +    +Y G++ S L+     ++ ++    P+YA + AR         V++ ++KK
Sbjct: 38  IVAQKVCAGVYKGVTTSQLDELAAETAASMTTSHPDYAILAARI--------VVSNLHKK 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y     R    G+KA L+   + D    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETVKEMYSHVDER---SGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRV++G+  ++ E    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVNGRVVERPQHMLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +R   ++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKEDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH DV ++LDL+KN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADVFDWLDLKKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  N+ W+LF P+E   L D +G+EFE  Y  YER+      
Sbjct: 324 RARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEEFESLYTRYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  R +SA  LW  +L    ETG+P++ FKD CN +S QQ++G +  SNLCTEI   +S 
Sbjct: 379 RAKRSLSAQKLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSP 438

Query: 595 EETAVCNLGSINLLAHFANNQ------------------FDYDKLASTIRTAVRVLDNVI 636
            ETAVCNL SI  L  F   Q                  FD+ KLA         L+ +I
Sbjct: 439 SETAVCNLASI-ALPRFVREQGINSETKLVGSKGCKNRVFDFHKLAEVTTVVTENLNKII 497

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + ++ AK+SN  HR IG+G+ G   A  LL +P+ S EA ++  +  E I +HA+ 
Sbjct: 498 DINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMK 557

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S  LA+  G Y ++ GS   +GVF  D   ++           + R  W  LK+ V   
Sbjct: 558 TSSILAELYGVYETYPGSPVSKGVFQPDMWNVIP----------SGRWDWAALKEMVARH 607

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+N+L    +W
Sbjct: 608 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIW 667

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              + + +  ++GSI +IE IPDDLK+I+ T +EI    +++ A  R  +IDQ+QSLN++
Sbjct: 668 TPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIH 727

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++P+  KL  ++  AW  GLKT  YYLRS++A    K T+
Sbjct: 728 MEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 768


>gi|1710391|sp|P50648|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 806

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 52/788 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L        +K          
Sbjct: 46  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDVAEVA 97

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305
           + LY     R    G  A L+ + + DF L++   L  ++ Y RDF ++Y G + L   Y
Sbjct: 98  EALYTYKDVR----GRPASLISKEVYDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSY 153

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   IE PQ   MRV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  
Sbjct: 154 LLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPR 210

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G+
Sbjct: 211 PQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 270

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A 
Sbjct: 271 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 330

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P+E   L + +G+EFE  Y  YE + + G+    + + A 
Sbjct: 331 WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQ 385

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL 
Sbjct: 386 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 445

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L         +F++ KL    +   R LD +I+ N + +++AK SN  HR IG+G+ 
Sbjct: 446 SIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQ 505

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL  PY S  A E+     E + + A+  SVELA   G Y S++GS   QG+ 
Sbjct: 506 GLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGIL 565

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D     A+V ++          WDELK +++  G+RNS  +A  PTA+ + I G ++S
Sbjct: 566 QFDMWN--AKVDNKY-------WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNES 616

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDL
Sbjct: 617 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDL 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  
Sbjct: 677 KELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 736

Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945
           YYLR+++AT   K T           LK  DG      V+    ST S    + C     
Sbjct: 737 YYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRN 796

Query: 946 SDTECEVC 953
           +D +C +C
Sbjct: 797 NDEQCLMC 804


>gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
 gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
          Length = 828

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/779 (37%), Positives = 440/779 (56%), Gaps = 48/779 (6%)

Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL + V    V       +YDG++ S+L+     ++ T+    P+YA++ AR  
Sbjct: 22  VRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAAETAATMTTAHPDYARLAARIS 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---- 280
           +  L        +K  +K     +  LY         E V  R   ++ M  D VY    
Sbjct: 82  VSNL--------HKNTKKTFTDVVTDLY---------EYVNPRTEKKAPMISDEVYQVIQ 124

Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + Y RDF ++Y G + L   Y L ING   E PQ   MRV++G+ + + + 
Sbjct: 125 DNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMRVSVGIHMDDLDA 184

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + GI+  L++ A ++
Sbjct: 185 ---AIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQTAKIS 241

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           + +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QGG KRKG+   Y+E
Sbjct: 242 QSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGGGKRKGSFAIYME 301

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FLDL+KN G +  R  D+  A W+ DLFMKRV  N  WTL  P E  DL+++
Sbjct: 302 PWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTLMCPHECPDLYNV 361

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EFE  Y  YE++      K  + I A  LW K+L    ETG P++ +KD  N +S Q
Sbjct: 362 YGDEFEALYTKYEQEG-----KGRKTIQARELWDKILESQIETGTPYMLYKDAANNKSNQ 416

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +++G + SSNLCTEI   +S +E AVCNL SI L     +  FD+  L    +   R L+
Sbjct: 417 KNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKALYKVTKRVTRNLN 476

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            VID N + + +A+ SN  HR +GLG+ G   A  +L +P+ S EA ++  E  E + F 
Sbjct: 477 KVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKKLNSEIFETLYFA 536

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS+E+AQE GAYS+F+GS   QG F  +    +  + D    + + R  W +L+ +V
Sbjct: 537 ACEASMEMAQEEGAYSTFEGSPMSQGEFQFN----MWNINDS---DLSGRWNWSDLRTKV 589

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L   
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVDL 649

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LWD+++ + +  ++GSI  IE IP+D+K+++ T +E+    +I+ + +R  +IDQ+QSL
Sbjct: 650 GLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRQRGYFIDQSQSL 709

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           NL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T   V  +    PV  P
Sbjct: 710 NLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFT---VTKEAKKAPVAQP 765


>gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
          Length = 749

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/742 (37%), Positives = 422/742 (56%), Gaps = 44/742 (5%)

Query: 172 GLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
           GL D   S  V  + + +MYD ++  +++T        +I  +P+Y  +  R +   +++
Sbjct: 28  GLSDKCDSSKVAQQVFSSMYDNITTQEIDTLSAEICVGMITSDPDYETLATRIVASNIQK 87

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                               + P  F   + +  KA ++ + +++     +   +K +RD
Sbjct: 88  --------------------VCPNNFHLAMRKLQKAGIITDEVVEV-AQQVKEHIKSDRD 126

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
           F F Y GL+ L   Y   ++G  IE PQ  FMRVA+G+  K+      A++ YN +S   
Sbjct: 127 FDFGYFGLKTLEKSYLQRVDGKLIETPQYMFMRVAIGIHGKDVPS---ALDTYNKMSQGL 183

Query: 351 FMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F+ +TPTLFN+GT  PQ+SSCFL     D + GI+G L E A ++K++GG+G     +R 
Sbjct: 184 FIHATPTLFNAGTPRPQMSSCFLIANKADSIDGIYGTLTECAQISKWAGGIGMHIHDIRA 243

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + I GTNG+S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ +FL+LR N 
Sbjct: 244 NKSRIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHSDIMDFLELRLNQ 303

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD+  R  D+ +A WIPDLFMKRV +   W+LF PD+   L D+YG+EFE  Y  YE + 
Sbjct: 304 GDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLFCPDKAKGLSDVYGQEFEDLYTKYEEEG 363

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                     + A  +W+ +L    ETG P++ +KD CN +S Q+++GV+ SSNLCTEI 
Sbjct: 364 LANAT-----VPAADVWKAILKSQTETGTPYMLYKDACNSKSNQKNLGVIKSSNLCTEIL 418

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
             +  +ET+VCNL SI  L  + N +   FDYDKL    +T  + L+ VID N + +E A
Sbjct: 419 EYTDKDETSVCNLASI-ALPKYVNKETKTFDYDKLHEITKTVTKNLNRVIDRNFYPVETA 477

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++SN  HR IGLG+ G      L  +P+   E+  +     E +   A+ AS ELA+  G
Sbjct: 478 RRSNMKHRPIGLGVQGLADVFILCGLPFDCEESRLMNAHIFETMYHAALEASSELAEVEG 537

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +Y SFKGS   +GV   D          +     + R  WD +++RVKT G+RNS  MA 
Sbjct: 538 SYESFKGSPAAEGVLQPDMW--------DGETKFSGRYDWDAMRERVKTKGLRNSLLMAP 589

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++  +P   N+Y++  ++G+F VVN  LV++LK+  LW + M   +  
Sbjct: 590 MPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVDDLKKVGLWSKEMKDLMVK 649

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
             GSI NI  IPDD+K ++ T +EI    +I+ A+ R ++IDQ+QS+NL+++ P+  KL 
Sbjct: 650 AGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMAADRGRFIDQSQSMNLFMESPTLSKLS 709

Query: 887 FIYRQAWLMGLKT-TYYLRSRS 907
            ++  AW  GLKT  YYLRS++
Sbjct: 710 SMHMYAWKAGLKTGMYYLRSKA 731


>gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
 gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
          Length = 826

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 294/802 (36%), Positives = 455/802 (56%), Gaps = 75/802 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   +    ++   +E+ C GL        DV+ K++       +YDG++  +L+
Sbjct: 3   VVKRDGRRETVKFDKITARIEKLCYGLDLNYIQPIDVARKVI-----NGIYDGVTTQELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ ++  K P+Y+K++AR  +  L        +K   K+  + M+ LY      Y
Sbjct: 58  NLAAETAASMTVKHPDYSKLSARIAISNL--------HKTTSKSFSNTMKRLYT-----Y 104

Query: 260 IEE--GVKARLL----------HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           ++   G  A LL          H + +D  ++Y       +RDF +++ G + L   Y +
Sbjct: 105 VDAKTGQNAPLLSTETYGIIKKHAAQLDSAIIY-------DRDFGYDFFGFKTLERSYLM 157

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ++G  +E PQ   MRVA+G+  ++ E    A++ YNL+S   F  +TPTLFN+GT  PQ
Sbjct: 158 KVDGKIVERPQHMLMRVAIGIHGEDIES---AIKTYNLMSEKWFTHATPTLFNAGTPKPQ 214

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL T+ +D + GI+  L++ A +++ +GG+G     VR  G++I GT G S G++P
Sbjct: 215 LSSCFLLTIQEDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTGGVSNGIVP 274

Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+  + TA  V+QGG KRKG+   YLE WH D+ +FLDL+KN G +  R  D+  A W+
Sbjct: 275 MLRNFDMTARYVDQGGGKRKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWM 334

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            DLFMKRV  NA WTLF P+E S L + YG +FE  YE YER+      K  + + A  L
Sbjct: 335 SDLFMKRVEANAEWTLFDPNEASGLDEAYGDDFEKLYEKYEREG-----KGRKTVKAQEL 389

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W ++L    ETG P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI
Sbjct: 390 WFEILESQIETGTPYMLYKDAANKKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASI 449

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L      ++     FD+DKL     TA   L+ VID+N + +E+A+ SN  HR IGLG+
Sbjct: 450 ALPMFVQEDENGQKFFDHDKLYDITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGV 509

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL  P+ S E+ ++  E  E I F A++AS +LA + G Y ++KGS   +G+
Sbjct: 510 QGLADAFMLLRYPFDSEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGI 569

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  D   +            T R  W  LK+ VK  G+RNS  +A  PTA+ + I G ++
Sbjct: 570 FQFDMWNV----------EPTDRWDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNE 619

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+ +L +R +W++ M + L   +GS+ +I  IP D
Sbjct: 620 CFEPYTSNIYTRRTLSGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQD 679

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           +K+++ T +EI    +I+ A+ R  +I Q+QS+NL++ +P+  K+  ++  AW  GLKT 
Sbjct: 680 IKELYKTVWEISQKAIIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTG 739

Query: 900 TYYLRSRSATS-----VEKSTL 916
            YYLRS++ATS     V+KS L
Sbjct: 740 MYYLRSKAATSAIQFTVDKSQL 761


>gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
 gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
          Length = 810

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/800 (35%), Positives = 438/800 (54%), Gaps = 55/800 (6%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++  ++      ++  +    P+YA + AR  +  L +  +T+    
Sbjct: 38  LVAQKVCAGVYKGITTGEIGELAAETAAAMTTSHPDYASLAARIAVSNLHKNTMTSF--- 94

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
              AT   ++ LY  Y  R    G+ A L+ + +      +   L  ++ Y+RDF ++Y 
Sbjct: 95  --SAT---VKALYTHYDER---SGLMAPLIADDVFTIIMKNTARLECEINYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I G   E PQ   MRV++G+   + E    A++ Y+++S   F  ++P
Sbjct: 147 GFKTLQRSYLLKIGGKVAERPQHMLMRVSVGIHKDDIES---AIKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L E A ++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLSECAAISKSAGGIGVSIHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDL+KN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHPDIFEFLDLKKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P E   L D +G EF+  Y+ YER+      
Sbjct: 324 RARDLFYALWVPDLFMERVQHNEQWSLFCPSEAPGLADCWGDEFQNLYQKYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + ++A ALW  +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVAAQALWFDILKAQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L            +H A         N  FD+DKLA         L+ 
Sbjct: 439 SETAVCNLASIALPRFVREKGVPIESHPAKLVGSSGSKNRYFDFDKLAEITSIVTCNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDI+ + IE A++SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I +H+
Sbjct: 499 IIDISYYPIENARRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHS 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA + G Y ++ GS   +G+   D   ++           +SR  W  +++ + 
Sbjct: 559 LKASAELAAKEGPYETYAGSPVSKGILQPDMWNVVP----------SSRWNWSAIREMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 QVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLSEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + + + Y DGS+  I  +PDDLK I+ T +EI    +++ A  R  +IDQ+QSLN
Sbjct: 669 VWSPVLKNKIIYEDGSVQKITEVPDDLKAIYKTVWEIKQKTIVDMAIDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +++++P+  KL  ++   W  GLKT  YYLR+R+A    K T+     K       + ++
Sbjct: 729 IHMEQPNSGKLTSLHFHGWSKGLKTGMYYLRTRAAADAIKFTVDTTLLKDKQPTSEEEDA 788

Query: 934 STHSLGIPSSCTSDTECEVC 953
                 +  S  +  EC  C
Sbjct: 789 QVKMAQVACSLNNREECLAC 808


>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata]
          Length = 810

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/798 (36%), Positives = 442/798 (55%), Gaps = 51/798 (6%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
            +K+    ++ +Y  +  R  +E  + A  ++E +M  +   L +++ Y+RDF ++Y G 
Sbjct: 90  TKKSFSETIKLMYHHFNERSGQEAPLIADDVYEIIMK-NAARLDSEIIYDRDFDYDYFGF 148

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ++G  +E PQ   MRVA+G+     +  K  +  Y+L+S   F  ++PTL
Sbjct: 149 KTLERSYLLKVSGMVVERPQHMLMRVAVGI---HKDDIKSVIRTYHLMSQRWFTHASPTL 205

Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +R  G++I GT
Sbjct: 206 FNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGT 265

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           NG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFL+LRKN G +  R 
Sbjct: 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMYEFLELRKNHGKEEHRA 325

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            D+  A WIPDLFM+RV  N  W+LF P+E   L D +G EFE  Y  YE   D G+ K 
Sbjct: 326 RDLFYALWIPDLFMERVQSNGQWSLFCPNEAPGLADCWGDEFEKLYLKYE---DEGKAK- 381

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + ++A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S  E
Sbjct: 382 -KVVAAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTE 440

Query: 597 TAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDNVI 636
           TAVCNL SI L                         N  FD+DKL          L+ +I
Sbjct: 441 TAVCNLASIALPRFVREKGVPLESHPSRLVGSSGSKNRYFDFDKLGEVTAIITENLNKII 500

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + +E A++SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I +HA+ 
Sbjct: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALK 560

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           +S E+A   G Y +++GS   +G+   D   +            + R  W  L++ +   
Sbjct: 561 SSSEIAISSGPYETYQGSPVSKGILQPDMWNV----------TLSDRWDWAALREMISKN 610

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  LW
Sbjct: 611 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+ + + Y DGS+  I  IPD+LK I+ T +EI    L++ A  R  +IDQ+QSLN++
Sbjct: 671 SPALKNKIIYEDGSVLKIPEIPDNLKAIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIH 730

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+     +    PV D +   
Sbjct: 731 MDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSLLQKTTKPVEDDDVEA 790

Query: 936 HSLGIPSSCTSDTECEVC 953
               +  S  +  EC  C
Sbjct: 791 KMAQVVCSLENREECMAC 808


>gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
 gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
          Length = 892

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/787 (36%), Positives = 447/787 (56%), Gaps = 51/787 (6%)

Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           +++  +++ C GL  + V    +  +  + +Y G++  +L+     ++  L  + P+YA 
Sbjct: 20  KIQSRIKKLCYGLDMRHVDPLAITIKVVQGVYHGVTTVELDNLAAETAAYLTTQHPDYAV 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHES---- 272
           + AR  +  L +E          K+    ++ LY      Y+  + G +A ++ ++    
Sbjct: 80  LAARIAISNLHKET--------TKSFSQVVEKLY-----NYVNPKNGKRASMISDATYKV 126

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +MD +   L + + Y+RDFA+ Y G + L   Y L ING   E PQ   MRVA+G+    
Sbjct: 127 VMD-NAETLDSAIIYDRDFAYNYFGFKTLERSYLLRINGRVAERPQHMIMRVAVGIHGDN 185

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL ++ DD + GI+  L++ A
Sbjct: 186 IE---RVLETYNLMSDRYFTHASPTLFNAGTPHPQMSSCFLVSMKDDSIEGIYDTLKQCA 242

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           M++K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QGG KR GA   
Sbjct: 243 MISKTAGGIGLNIHNIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAI 302

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH DV EFLDLRKN G + +R  D+  A WIPDLFMKRV     W+LF P+E   L
Sbjct: 303 YLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSLFCPNEAPGL 362

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D +G EFE  Y  YE      E +  +KI A  LW  +L    ETG+P++ +KD  N +
Sbjct: 363 ADCWGDEFEALYAKYE-----AEGRERKKIPAQKLWYAILEAQIETGNPFMLYKDSANRK 417

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           S QQ++G + SSNLCTEI   S+ +ETAVCNL S+ L     +  +D+ KL    +   R
Sbjct: 418 SNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIRDGVYDFQKLHDVTKVVTR 477

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +ID+N + + +A++SN  HR IGLG+ G   A   L +P+ SPEA E+  +  E I
Sbjct: 478 NLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARELNKQIFETI 537

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+E G Y +++GS   QG    D  G+            +    W  LK
Sbjct: 538 YHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTP----------SDLWDWASLK 587

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   GMRN+  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +L+ EL
Sbjct: 588 AKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLREL 647

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
             + LWD+ M + +  ++GSI +I RIPDD+K I+ T +EI    +++ A+ R  +I Q+
Sbjct: 648 VDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAADRGPFICQS 707

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK---GVDG 921
           QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A+     +V+++ LK     +G
Sbjct: 708 QSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQAMLKESNKAEG 767

Query: 922 KLNAVPV 928
           ++   P 
Sbjct: 768 EVAGAPA 774


>gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
 gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
          Length = 789

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 308/826 (37%), Positives = 446/826 (53%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L + +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P +  DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTQDLCDLYGEAFEKRYEEYEKDESIAKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     EE  + +
Sbjct: 401 LCFKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIID 460

Query: 602 LG------SINLLAHFANNQ--------------------------FDYDKLASTIRTAV 629
            G       I+ L  F  N+                          +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEK 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           IS+ AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISYEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKALTLREGLF--NQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D+L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L
Sbjct: 639 DKLREKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL 698

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E  Q                                +  A+E+D   L+++A+ R KW
Sbjct: 699 SLETWQ-------------------------------YYTPAYELDQRILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNDIYQLAWELGVKSTYYLRSESPDS 773


>gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb18]
          Length = 881

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/776 (36%), Positives = 438/776 (56%), Gaps = 44/776 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++      KK   +   ++      Y     + G  A ++ +S  +  + +   
Sbjct: 82  AVSNLHKQT-----KKQFSSVIDDL------YHYHNPKNGRPAPMISQSTYEIVMRHADE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
             + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   + E   R +
Sbjct: 131 FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDDVE---RVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D
Sbjct: 248 IGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHMD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG EF
Sbjct: 308 IFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE++  RG+    + I A  LW  +L    ETG+P++ +KD CN +S Q+++G 
Sbjct: 368 EALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  VR L+ +I
Sbjct: 423 IRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNRII 482

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E I    ++
Sbjct: 483 DRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLT 542

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+  G YSS++GS   QG+   D  G+            T    WD LK+ +   
Sbjct: 543 ASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDSLKQEIAKH 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L    LW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN++
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV 926
           L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  +  V
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARV 768


>gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 811

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/763 (37%), Positives = 433/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L +       KK
Sbjct: 38  LVAQKVCMGVYKGVTTSQLDELAAETAAAMTANHPDYAILAARIAVSNLHKNT-----KK 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
               T  +M      Y+      G+K+ L+ + + D    +   L +++ Y+RDF ++Y 
Sbjct: 93  SFSETVKDM------YYHVNERSGLKSPLIADDVYDIIIKNAPRLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRV++G+  +  E     ++ Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHKENIEA---VLKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKNDSIEGIYDTLKECAVISKSAGGIGLSVHNIRTTGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ E+LDLRKN G +  
Sbjct: 264 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEWLDLRKNHGKEES 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  N  W+LF P+E   L D +G++FE  Y  YE +    ++
Sbjct: 324 RARDLFYGLWIPDLFMQRVQNNGTWSLFCPNEAPGLADCWGEQFETLYARYELEGRAKKV 383

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
                + A  LW  +L    ETG+P+I FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 384 -----VQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 438

Query: 595 EETAVCNLGS-----------INLLAH---------FANNQFDYDKLASTIRTAVRVLDN 634
           +ETAVCNL S           ++L +H           N  FD++KL        R L+ 
Sbjct: 439 DETAVCNLASLALPRFVREKGVSLESHPTKIIGSNGHENRFFDFNKLGEITSLVTRNLNR 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E A++SN  HR IGLG+ G   A  LL +P+ S EA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETARRSNMRHRPIGLGVQGLADAFILLGMPFDSEEAQQLNRDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S ELA E G Y ++ GS       PI    L  ++ +   +  ++R  WD L++ + 
Sbjct: 559 LKTSCELAAEEGVYETYAGS-------PISKGALQPDMWN---VKPSTRWDWDSLRQMIL 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+N+L    
Sbjct: 609 NNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTNMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + YH+GSI  I+ IPDDLKKI+ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 669 LWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVDMAAARGAFIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+
Sbjct: 729 IHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAAADAIKFTV 771


>gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
 gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
          Length = 847

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 52/788 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L        +K          
Sbjct: 87  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDVAEVA 138

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305
           + LY     R    G  A L+ + + DF L++   L  ++ Y RDF ++Y G + L   Y
Sbjct: 139 EALYTYKDVR----GRPASLISKEVYDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   IE PQ   MRV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  
Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPR 251

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G+
Sbjct: 252 PQMSSCFLLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A 
Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 371

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P+E   L + +G+EFE  Y  YE + + G+    + + A 
Sbjct: 372 WVPDLFMKRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQ 426

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL 
Sbjct: 427 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L         +F++ KL    +   R LD +I+ N + +++AK SN  HR IG+G+ 
Sbjct: 487 SIALCKFVDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQ 546

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL  PY S  A E+     E + + A+  SVELA   G Y S++GS   QG+ 
Sbjct: 547 GLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGIL 606

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D     A+V ++          WDELK +++  G+RNS  +A  PTA+ + I G ++S
Sbjct: 607 QFDMWN--AKVDNKY-------WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNES 657

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDL
Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDL 717

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  
Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777

Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945
           YYLR+++AT   K T           LK  DG      V+    ST S    + C     
Sbjct: 778 YYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRN 837

Query: 946 SDTECEVC 953
           +D +C +C
Sbjct: 838 NDEQCLMC 845


>gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 796

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/782 (37%), Positives = 436/782 (55%), Gaps = 52/782 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    V    V  +    +Y G++  +L+     ++  L  K P+YA + AR 
Sbjct: 22  INKLCYGLDMNYVDPAEVAQKVVTGVYQGVTTVELDNLAAETTAYLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L +E         +K     MQ LY      Y+           S   FD +    
Sbjct: 82  AISNLHKET--------KKQFSSVMQDLY-----EYVNPKNNKHSPMISKTTFDCILKNA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L IN    E PQ   MRVA+G+   + E    
Sbjct: 129 DRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLMRVAVGIHGDDVEA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
            +E YNL+S  +F  ++PTLFN+GT +PQ+SSCFL T+ DD + GI+  L+  AM++K +
Sbjct: 186 VIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIEGIYSTLKTCAMISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKNTG +  R  D+  A WIPD+FM+RV  N  W+LF P E   L D++G 
Sbjct: 306 ADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWSLFCPAEAPGLDDVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE YER+    +I     I A  LW  +L    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFDALYEKYEREGRARKI-----IKAQKLWYAILDSQSETGTPYMLYKDACNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRV 631
           G +  SNLCTEI   SS +E AVCNL S+ L      +      FD+DK+  T + A   
Sbjct: 421 GTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPVFDFDKMIDTTKIATYN 480

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +I++N + +E+AK+SN  HR IGLG+ G       + +P+ SPEA ++  +  E I 
Sbjct: 481 LNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFDSPEAKKLNIQIFEAIY 540

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A++AS ELA+  G Y ++ GS   +G+   D   +  +V D+          W  L+ 
Sbjct: 541 FAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWNV--KVSDQF--------DWPTLRA 590

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +   G+RNS  +A  PTA+ + I G +++ +P   N+Y++  +SG+F +VN  L+ +L 
Sbjct: 591 NIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVLSGEFQIVNQHLLKDLT 650

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +  LW+E+M + +   +GSI NI  IP  LK I+ T +EI    +I+ A+ R  +IDQ+Q
Sbjct: 651 ELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKVIIDMAADRGAFIDQSQ 710

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL-KGVDGKLN 924
           SLN++L E +  KL  ++   W  GLKT  YYLRSR A      +V+K +L +G + K N
Sbjct: 711 SLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKFTVDKQSLTQGAEDKNN 770

Query: 925 AV 926
            V
Sbjct: 771 VV 772


>gi|260061081|ref|YP_003194161.1| putative ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
 gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
          Length = 812

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/767 (37%), Positives = 444/767 (57%), Gaps = 37/767 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL D+   + V     + +YDG++ S+L+      + TL    P+YAK+ AR  
Sbjct: 9   VRKLCYGLSDLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTTHPDYAKLAARIS 68

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +  L        +K  +K+    M+ LY     R    G KA L+ + +  F+++    D
Sbjct: 69  VSNL--------HKNTKKSFSETMKDLYEYVNPR---TGKKAPLVADDV--FEVIQKHAD 115

Query: 285 -----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                + Y RDF ++Y G + L   Y L +NG  +E PQ   MRV++G+ L + +  +  
Sbjct: 116 TLDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDDLDAVR-- 173

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSG 398
            E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ +G
Sbjct: 174 -ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKISQSAG 232

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457
           G+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH 
Sbjct: 233 GIGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWHA 292

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FL+L+KN G +  R  D+  A WI DLFMKRV  +A WTL  P+E   L+  + +E
Sbjct: 293 DIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYTTHSEE 352

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  Y  YE++      K  + I A  LW K+L    ETG P++ +KD  N +S Q+++G
Sbjct: 353 FEELYLKYEKEG-----KGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLG 407

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + SSNLCTEI   ++ +E AVCNL SI L     N +FD+ +L    +   + L+ VID
Sbjct: 408 TIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNRVID 467

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + I++A+ SN  HR IGLG+ G      LL +P+ S EA ++  E  E + + A +A
Sbjct: 468 RNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAATA 527

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+E+A+E G YSS++GS   QG F  +  G    + D+     + R  W++L+K +K  G
Sbjct: 528 SMEMAKEEGPYSSYEGSPISQGQFQHNLWG----IEDK---ELSGRWDWEKLRKSIKKNG 580

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    LW+
Sbjct: 581 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSLGLWN 640

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M  +L   +GSI +I+ IPD++K+++ T +E+    +I+ + +R  +IDQ+QSLNL++
Sbjct: 641 ENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSLNLFM 700

Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           +  +  KL  ++  AW  GLKT  YYLR+++A    K TL     K+
Sbjct: 701 ENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTKKKV 747


>gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium
           berghei strain ANKA]
 gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium berghei]
          Length = 847

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/788 (37%), Positives = 438/788 (55%), Gaps = 52/788 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L             K+T+ ++
Sbjct: 87  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL------------HKSTNDDI 134

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305
             +    +      G  A L+ + + DF + +   L  ++ Y RDF ++Y G + L   Y
Sbjct: 135 GKVAEALYTYKDIRGRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  
Sbjct: 195 LLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G+
Sbjct: 252 PQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A 
Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAI 371

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P+E   L + +G EFE  Y  YE + + G+    + + A 
Sbjct: 372 WVPDLFMKRVKENKNWTLMCPNECPGLSESWGDEFEKLYTKYEEE-NLGK----KTVLAQ 426

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL 
Sbjct: 427 DLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486

Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L         +F++ KL    +   R LD +I+ N + I++A+KSN  HR IG+G+ 
Sbjct: 487 SIALCKFVDREKKEFNFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQ 546

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL  PY S EA E+     E + + A+  SVELAQ  G Y S+KGS   QG+ 
Sbjct: 547 GLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKGSPASQGIL 606

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D     A+V ++          WD LKK++   G+RNS  +A  PTA+ + I G ++S
Sbjct: 607 QFDMWN--AKVDNKY-------WDWDLLKKKISIHGLRNSLLLAPMPTASTSQILGNNES 657

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP+DL
Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDL 717

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  
Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777

Query: 901 YYLRSRSATSVEKST-----------LKGVDGKLNAVPVTDPNSSTHSLGIPSSC----T 945
           YYLR+++AT   K T           LK  +G      V+    ST S    ++C     
Sbjct: 778 YYLRTQAATDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQNACPLRRN 837

Query: 946 SDTECEVC 953
           +D  C +C
Sbjct: 838 NDEPCLMC 845


>gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha
           [Sulfurimonas autotrophica DSM 16294]
 gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas autotrophica DSM 16294]
          Length = 788

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/829 (36%), Positives = 452/829 (54%), Gaps = 118/829 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI 
Sbjct: 2   ITVIKRNGRTEPLDISKIQKYTSAAVKGLGNVSQSELEVDAQIHFRDGITSKEIQETLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  L  L  +V                 C   +YF +  +EG
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFLFNLYHQV-----------NGFTGYCKLEKYFEKGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +    S  IE+PQ  FM
Sbjct: 111 ---RILLGLKEMYDLDELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA +E  +++ A++FYN++S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AIAMFLAQREENRQEWAIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A +E AML+K+ GG+G DWT VR +G++I G    + G IPFLK+ ND A+AV+Q G
Sbjct: 228 IFDAYKEMAMLSKFGGGIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHID+ +FLDL+KN+G++RRR HD+  + W+ D+FMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYLEPWHIDINDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  +L ++YG+EF   Y   E + D   IK   K+ A  LW+K+LT  FETG P++ 
Sbjct: 348 DPYDTRELTNMYGEEFNKRY--LELEQDESIIK--EKVKAKDLWKKILTSYFETGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------SSEE--------- 596
           FKD  N  +P  H G++ SSNLCTEI  N+                 S EE         
Sbjct: 404 FKDNANRANPNDHYGIIRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDSG 463

Query: 597 --------TAVCNLG----------------------SINLLAHFANNQFDYDKLASTIR 626
                   TA+ +LG                      SINL     N + D D++   + 
Sbjct: 464 ITKPAKKVTALDSLGGLPIFVVEKEKVDGSTAVCNLASINL--SRVNTKKDIDRI---VP 518

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R LDNVID+N + +EK K++N   R+IGLG+MG    L      + S E  +  DE 
Sbjct: 519 TAIRCLDNVIDLNFYPVEKVKRTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEI 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRL 744
           ME + ++A+SAS +LA E+G+Y  F+GS W +G+ P D     AEV + +       S  
Sbjct: 579 MESVCYNAVSASSDLAAEKGSYPEFEGSKWSRGIMPQDHAN--AEVVNLVDRGGLFASTY 636

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WDEL+ +VK  GMRN   MA+APT++I+ + G +Q+I+P ++  + + N+SG   VV  
Sbjct: 637 EWDELRAKVKKQGMRNGYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVV-- 694

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                        +  +  D    +  A++++   LI++A+ RQ
Sbjct: 695 -----------------------------VPNLSPDTWSYYTPAYDLNQTVLIKAAAIRQ 725

Query: 865 KWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           KWIDQ QSLN++  LD+ SG+ L+ IY  AW +GLK+TYYLRS+S   V
Sbjct: 726 KWIDQGQSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEMV 774


>gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
 gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
          Length = 792

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 295/797 (37%), Positives = 444/797 (55%), Gaps = 51/797 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   +    ++   +E+ C G         DV+ K++     + +YDG++ S+L+
Sbjct: 3   VIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVI-----EGLYDGVTTSELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ +L  K P+YA + +R  +  L        +K   K+    M+ LY     +Y
Sbjct: 58  NLAAETAASLTTKHPDYALLASRIAVSNL--------HKNTTKSFSKTMEMLY-----KY 104

Query: 260 IEEGV--KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           ++      A L+ + + +    +   L + + Y+RDF F+Y G + L   Y L I G  +
Sbjct: 105 VDSKTDKSASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFKTLEKSYLLKIEGQIV 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRVA+G+   + +    A++ YNL+S   F  +TPTLFN+ T  PQ+SSCFL 
Sbjct: 165 ERPQHLFMRVAVGIHKSDIDS---AIKTYNLMSERWFTHATPTLFNAATPKPQMSSCFLL 221

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV ND
Sbjct: 222 TMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFND 281

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFMKR
Sbjct: 282 TARYVDQGGGKRKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKR 341

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+LF P E   L D +G EFE  YE YE++      +  + + A  LW  +L  
Sbjct: 342 VEANEDWSLFCPHEAPGLADCFGDEFEALYERYEKEG-----RARKTVKAQELWFAILDS 396

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     
Sbjct: 397 QIETGTPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVI 456

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N +FD+ KL      A   L+ +ID N + +E+AK SN  HR +GLG+ G   A  L+ +
Sbjct: 457 NGEFDHQKLYDVTYQATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRL 516

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A  +  E  E I F A++AS +LA   G Y +FKGS   QG F  D   +  + 
Sbjct: 517 PFESDGARLLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPD- 575

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 576 --------SGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 627

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI 
Sbjct: 628 RVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIK 687

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+  
Sbjct: 688 MRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQA 747

Query: 912 EKSTLKGVDGKLNAVPV 928
            K T++   GK N  PV
Sbjct: 748 VKFTVENQAGK-NMEPV 763


>gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F32]
          Length = 788

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/829 (38%), Positives = 450/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636
           N +   AN     D           K+A   +TAV                  RV+  ++
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521

Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                  D+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 812

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/763 (36%), Positives = 428/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYRGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
             K+    ++ +Y  +  R    G+ A L+ + + +    +   L +++ Y+RDF +++ 
Sbjct: 90  TMKSFSETVKVMYTHFNER---SGLMAPLIADDVYEIIMKNATRLDSEIIYDRDFDYDFF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRV++G+   + E    AV+ Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVGGKVVERPQHMLMRVSVGIHKDDIES---AVKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L E A ++K +GG+G     VR  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLSECASISKSAGGIGVSIHNVRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIYEFLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM+RV +N  W+LF P E   L D +G EF+  Y  YER+    +I
Sbjct: 324 RARDLFYALWIPDLFMERVQKNEQWSLFCPSEAPGLADCWGDEFQNLYNKYEREGKAKKI 383

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
                +SA +LW ++L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 384 -----VSAQSLWFEILKAQIETGTPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIVEFTSP 438

Query: 595 EETAVCNLGSINLL-----------AHFA---------NNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L            +H A         N  FD+DKLA         L+ 
Sbjct: 439 TETAVCNLASIALPRFVREKGVPIESHPAKLVGSIGSKNRYFDFDKLAEITSVVTWNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + IE A++SN  HR IG+G+ G      LL +P+ SPEA ++  +  E I +HA
Sbjct: 499 IIDINYYPIETARRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS E+A + G Y ++ G    +G+   D   ++           + R  W  ++  + 
Sbjct: 559 LKASAEIAAKEGPYETYDGCPVSKGILQPDMWNVVP----------SDRWDWPAIRGMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + +++ Y DGS+  I  IPDDLK I+ T +EI    +++ A  R  +IDQ+QSLN
Sbjct: 669 IWSPVLKNNIIYDDGSVQKITEIPDDLKAIYKTVWEIKQKTVVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+ +  KL  ++   W  GLKT  YYLR+R+A    K T+
Sbjct: 729 IHMDQANSGKLTSLHFHTWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|298207003|ref|YP_003715182.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
          Length = 840

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/759 (37%), Positives = 440/759 (57%), Gaps = 33/759 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V++ C GL ++   + V     + +YDG++ SDL+     ++ ++    P+YAK+ AR  
Sbjct: 22  VKKLCYGLNELVDPVKVAMRVIEGLYDGVTTSDLDNLAAETAASMTVSHPDYAKLAARIS 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281
           +  L ++          K T  E+     EY       G KA LL + +      +   L
Sbjct: 82  VSNLHKDT---------KKTFSEVMTDLYEYVNP--RTGKKAPLLSDEVYKVIQDNKDRL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RD+ ++Y G + L   Y L +NG   E PQ   MRV++G+ L + +    A+E
Sbjct: 131 DSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSVGIHLDDLDA---AIE 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTAKISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+E WH D+
Sbjct: 248 GLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVDQGGGKRKGSFAIYIEPWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KN G +  R  D+  A WIPDLFMKRV ++  WTL  P+E  +L +++ +EF+
Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTLMCPNECPNLFNVHSEEFD 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y  YE      E K  + I A  LW K+L    ETG P++ +KD  N +S Q+++G +
Sbjct: 368 ELYLKYE-----SENKGRKTIKARVLWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLCTEI   +S +E AVCNL SI L     N  FD+ +L    +   + L+ VID N
Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDHKELFRITKRVTKNLNKVIDRN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA  +  E  E + F A++AS+
Sbjct: 483 YYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKTLNQEIFETLYFAAVTASM 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA E G YSS++GS   +G F  +  G    ++DE     + R  W  L+++V   G+R
Sbjct: 543 ELAIEEGPYSSYEGSPISKGEFQYNLWG----IKDE---ELSGRWDWAGLRQKVLENGVR 595

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L    LW+  
Sbjct: 596 NSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNLGLWNND 655

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           + + +   +GSI NI+ IP DLK+++ T +E+    +I+ +  R  +IDQ+QSLNL+++ 
Sbjct: 656 LKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSRHRGYFIDQSQSLNLFMEN 715

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  KL  ++  AW  GLKT  YYLR+++A    K T++
Sbjct: 716 ANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVE 754


>gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
 gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
          Length = 827

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/774 (37%), Positives = 449/774 (58%), Gaps = 41/774 (5%)

Query: 166 VEEACSGLQDVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL +    + +S    + +YDG++ S+L+      + T+    P++AK+ AR  
Sbjct: 22  VRKLCYGLNERVDPVKVSLRVIEGLYDGVTTSELDNLAAEIAATMTTTHPDFAKLAARI- 80

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLL----HESMMDFDL 278
                   ++ ++K  +K+    M+ LY     +Y+    G  + LL    ++++MD + 
Sbjct: 81  -------SVSNLHKNTKKSFSETMEDLY-----KYVNPRNGKSSPLLSDEVYQAIMD-NA 127

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y RDF ++Y G + L   Y L +NG  +E PQ   MRV++G+   + +    
Sbjct: 128 ELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHPTDMDS--- 184

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ +
Sbjct: 185 AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAKISQSA 244

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G     VR  G++I GTNG S GV+P LKV NDTA  V+QGG KRKG+   Y+E WH
Sbjct: 245 GGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVDQGGGKRKGSFAMYVEPWH 304

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV  NA WTL  P+E  +L + + +
Sbjct: 305 ADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTLMCPNECPNLFNNHSE 364

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F+  Y  YE +      K  + I A  LW K+L    ETG P++ +KD  N +S Q+++
Sbjct: 365 AFDELYLKYESEG-----KGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNL 419

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G + SSNLCTEI   +S +E AVCNL SI L     +  FD+ +L    +   + L+ VI
Sbjct: 420 GTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDHKELFKVTKRVTKNLNKVI 479

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D N + +++A+ SN  HR IGLG+ G   A  +L +P+ S EA ++ +E  E + F A++
Sbjct: 480 DRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNEEIFETLYFAALT 539

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E A+  G Y S+KGS   QG F  +  G    ++DE     + R  W +L+K VK  
Sbjct: 540 ASMEEAKADGPYQSYKGSPISQGEFQHNLWG----IKDE---ELSGRWDWAKLRKDVKKN 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    LW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVALGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           DE +  +L   +GS+ +I+ IP D+K+++ T +E+    +I+ + +R  +IDQ+QSLNL+
Sbjct: 653 DEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNLF 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           ++  +  KL  ++  AW  GLKT  YYLR+++A    K TL     K   VPV+
Sbjct: 713 MENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTAKK--DVPVS 764


>gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 865

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/800 (36%), Positives = 440/800 (55%), Gaps = 66/800 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++ DG        ++   V   C GL  + V +  +  +    +Y G++  +L+     
Sbjct: 17  LLITDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAE 76

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVY-------KKPQKATHHEMQC 250
           ++  +    P+YA + AR  +  L ++       V++ +Y       KKP      E   
Sbjct: 77  TAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETY- 135

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
              E   ++ EE                  L + + Y+RDF + + G + L   Y L ++
Sbjct: 136 ---EIVMKHAEE------------------LNSAIVYDRDFNYNFFGFKTLERSYLLRLD 174

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G   E PQ   MRVA+G+   + E   RA+E YNL+S  +F  ++PTLFN+GT  PQL+S
Sbjct: 175 GKIAERPQHLLMRVAVGIHGNDIE---RAIETYNLMSQKYFTHASPTLFNAGTPQPQLAS 231

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  + +D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+
Sbjct: 232 CFLVDMKEDSIDGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLR 291

Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           V N+TA  V+QGG KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDL
Sbjct: 292 VFNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDL 351

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  N  WTLF P+E   L D+YG EF+  YE YE++  RG     R I A  LW  
Sbjct: 352 FMKRVEANGDWTLFCPNEAPGLADVYGDEFDALYEQYEKEG-RGR----RTIKAQKLWYA 406

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607
           +L    ETG+P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L 
Sbjct: 407 ILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALP 466

Query: 608 -LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                +  ++D+ KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A
Sbjct: 467 TFVDASRGEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADA 526

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
              L +P+ S EA ++  +  E I   A++AS  LA+E G Y S++GS   QG+   D  
Sbjct: 527 FLALRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDM- 585

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                         T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P  
Sbjct: 586 ---------WERTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYT 636

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+Y +  ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IPDD+K ++ 
Sbjct: 637 SNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYK 696

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI    ++E A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+
Sbjct: 697 TVWEISQRRILEMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRT 756

Query: 906 RSAT-----SVEKSTLKGVD 920
            +A+     +V++  LK  D
Sbjct: 757 MAASAPIQFTVDQEQLKVAD 776


>gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor
           sp. SB155-2]
 gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor
           sp. SB155-2]
          Length = 789

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 296/826 (35%), Positives = 450/826 (54%), Gaps = 119/826 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +G +   +  +++   + AC GL+ VS   +  +      DG++  +++  LI 
Sbjct: 2   IRVVKRNGRVEPLDITKIQKYTKAACEGLEGVSQSELEVDAKIQFRDGITTEEIQQTLI- 60

Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             RT ++K     PN++ V AR  L  L        Y K    T +        +   Y 
Sbjct: 61  --RTAVDKIDVDRPNWSFVAARLFLYDL--------YHKVSGFTGYR-------HLREYF 103

Query: 261 EEGVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318
           E+G K  R++      +DL  L + +K ERD  F YLG++ LYDRY L   N + IE+PQ
Sbjct: 104 EKGEKEGRIIPGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQ 163

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             FM VAM LA  E + +  A  FY+++S F  M +TPTL N+ T   QLSSC++ + PD
Sbjct: 164 QLFMAVAMFLAQNELDCQSWAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPD 223

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++ GIF + +E A+L+KY GG+G DW+ VR +G++I G    + G++PFLK+ ND A+AV
Sbjct: 224 NIEGIFDSYKEMALLSKYGGGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAV 283

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G RKGA+  Y+E WH+D+++F+DL+KN+G++RRR HD+  A WI DLFMKRV ++  
Sbjct: 284 DQLGTRKGAIAVYIEPWHMDIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGI 343

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF P E SDL +++G+EFE  Y  YE++ D     +  ++ A  LW+ +L   FETG 
Sbjct: 344 WTLFDPYETSDLTEVWGEEFEKRYLEYEQRDD----ILKEQVRAKELWKLILRSYFETGS 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------------- 593
           P++ FKD  N  +P  H G++ SSNLCTEI  N+                          
Sbjct: 400 PFLCFKDNANKCNPNDHAGIIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIR 459

Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLAS--------------------TIRT 627
                  +   + ++ SIN    F   +   D L +                     +  
Sbjct: 460 IDTGIVKKAKKISSIDSINGKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPI 519

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVID+N + +EK KK+N   R+IGLG+MG    L    I + S E  +  DE M
Sbjct: 520 AIRMLDNVIDLNFYPLEKVKKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIM 579

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744
           E IS++AI +S  LA E+G Y  F+ S W +G+ PID+    A+   +L  +R       
Sbjct: 580 EMISYNAIRSSSNLAVEKGVYPLFENSKWAKGILPIDTANKEAK---KLTPDRGGLFGYI 636

Query: 745 -PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W+EL+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV 
Sbjct: 637 YDWNELREKVKRDGMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVV- 695

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                         +  +  D  + +  A+++D   LI++A+ R
Sbjct: 696 ------------------------------VPNLSPDTWQYYTPAYDLDQRLLIKAAAVR 725

Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QKWIDQ QS+N++  LD+ SG+ L  IY  AW +GLK+TYYLRS+S
Sbjct: 726 QKWIDQGQSVNIFIRLDKASGRYLHEIYTLAWKLGLKSTYYLRSQS 771


>gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
 gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
          Length = 788

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/829 (38%), Positives = 450/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636
           N +   AN     D           K+A   +TAV                  RV+  +I
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521

Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                  D+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/763 (37%), Positives = 433/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCMGVYKGVTTSQLDELAAETAAAMTANHPDYAILAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y     R    G+K+ L+ + + D    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETVKDMYRHVNAR---SGLKSPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRV++G+     +     ++ Y+ +S   F  ++P
Sbjct: 147 GFKTLERSYLLRVNGKVVERPQHMLMRVSVGIHKDNIDA---VLKTYHTMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  T  D + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCTKGDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ ++LDLRKN G +  
Sbjct: 264 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV +N  W+LF P+E   L D +G+EFE  Y  YE +      
Sbjct: 324 RARDLFYGLWIPDLFMRRVQENGVWSLFCPNEAPGLADCWGEEFEKLYTRYEVEG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW  +L    ETG+P+I FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 438

Query: 595 EETAVCNLGSINLL-----------AH---------FANNQFDYDKLASTIRTAVRVLDN 634
           +ETAVCNL SI L            +H         + +  FD++KL        R L+ 
Sbjct: 439 DETAVCNLASIALPRFVRERGVPMDSHPTKVIGSNGYESRYFDFEKLGEITSLVTRNLNR 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E A++SN  HR IGLG+ G   A  LL +P+ S EA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVEAARRSNMRHRPIGLGVQGLADAFILLGMPFDSEEAQKLNRDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S ELA E G Y ++ G        PI S GLL    D   +  +SR  WD L++ + 
Sbjct: 559 LRTSCELAAEEGVYETYDGC-------PI-SKGLLQP--DMWDVKPSSRWDWDALRRMIA 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+N+L    
Sbjct: 609 KNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTDLG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + + + + YH+GSI  I+ IP  LKKI+ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 669 LWTQDLKNQIIYHNGSIQQIDAIPAGLKKIYRTVWEIKQRAIVDMAAARGAFIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++D+P+  KL  ++  +W  GLKT  YYLRSR+A    K T+
Sbjct: 729 IHMDQPNFGKLTSLHFYSWTKGLKTGMYYLRSRAAADAIKFTV 771


>gi|91215506|ref|ZP_01252477.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186458|gb|EAS72830.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
          Length = 815

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/763 (36%), Positives = 442/763 (57%), Gaps = 41/763 (5%)

Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           + + C GL   V    V     + +YDG++ S+L+      S T+    P+YA++ AR  
Sbjct: 22  IRKLCYGLNPLVEPAKVAMRVIEGLYDGVTTSELDNLAAEISATMTVSHPDYAQLAARIS 81

Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           +  L +       EV+  +Y+      + +   +  + + + IEE       H+  +D  
Sbjct: 82  VSNLHKNTKKSFSEVMADLYEYVNPRNNKKSPLIADDVY-KVIEE-------HKDELDSR 133

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
           ++Y        RDF ++Y G + L   Y L +NG   E PQ   MRV++G+  ++ E   
Sbjct: 134 IIY-------SRDFNYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSLGIHGEDLES-- 184

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
             +E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + GI+  L++ A +++ 
Sbjct: 185 -VLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDGIYDTLKQTARISQS 243

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+E W
Sbjct: 244 AGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYVEPW 303

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+  FLDL+KN G +  R  D+  A WIPDLFMKRV +N+ WTL  P+E  +L++++ 
Sbjct: 304 HADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTLMCPNECPNLYNVHS 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EF+  Y  YE Q ++G     + I A  LW K+L    ETG P++ +KD  N +S Q++
Sbjct: 364 EEFDELYLKYE-QENKGR----KTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + SSNLCTEI   +S +E AVCNL SI L     N +F + +L    +  ++ L+ V
Sbjct: 419 LGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQHKELYKITKQIIKNLNKV 478

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA ++  E  E + F A+
Sbjct: 479 IDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAV 538

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +S+ELA+  G YSSF+GS   +G F  +  GL          + + R  W +L+++V  
Sbjct: 539 ESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDN-------DTSGRWNWSKLREKVMK 591

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  MA  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L    L
Sbjct: 592 HGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVSLGL 651

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD+ +   +   +GS+  I+ IPDD+K+++ T +E+    +I+ + +R  +IDQ+QSLNL
Sbjct: 652 WDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSLNL 711

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           +++  +  KL  ++  AW  GLKT  YYLR++SA    K TLK
Sbjct: 712 FMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLK 754


>gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe]
          Length = 811

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/762 (37%), Positives = 436/762 (57%), Gaps = 37/762 (4%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            +  L ++   V +TV ++     + +     P    +  +  +K    H+  +D  ++Y
Sbjct: 82  AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
                  +RDF + + G + L   Y L I+G   E PQ   MRVA+G+  ++ E    A+
Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L+  AM++K +GG
Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  G++I GTNG S G++P ++V N+TA  V+QGG KR GA  AYLE WH D
Sbjct: 248 IGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +FL+LRK  G++  R   M  A WIPDLFM+RV +N  WT F P+E   L D++G EF
Sbjct: 308 VMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              YE YE++ +RG     R + A  +W  +L    ETG+P++ +KD CN +S Q++VG 
Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + SSNLCTEI   SS +E AVCNL S+ L     + ++++ KL   ++   R L+ +ID+
Sbjct: 423 IRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +A++SN  HR +GLG+ G   A   L +P+ S  A ++  +  E I   A+ AS
Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            E+AQ  G Y S++GS   QG+   D   +          N T    W E K+++   G+
Sbjct: 543 CEIAQVEGTYESYEGSPCIQGILQYDMWNV----------NPTDLWDWAEFKEKIAKHGI 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L +RDLW+E
Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M + L   DGSI  I  IP DLK ++ T +EI    +I+ A+ R  +IDQ+QSLN++L 
Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754


>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae]
 gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]
          Length = 812

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 299/800 (37%), Positives = 446/800 (55%), Gaps = 41/800 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLE 199
           + KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+
Sbjct: 9   SSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELD 68

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYF 256
                 S  L     +YA + AR  +  L +E   V + V++      + E     P   
Sbjct: 69  NLAAEISAGLTCNHADYAILAARIAVSNLHKETRKVFSDVFEALYTHVNKETNLRAP--- 125

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              + E       H +++  +   L + + Y+RDF + Y G + L   Y L ING   E 
Sbjct: 126 --LVSE------FHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERSYLLKINGKVAER 177

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+
Sbjct: 178 PQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTM 234

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A
Sbjct: 235 TADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVA 294

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A WIPDLFMKRV 
Sbjct: 295 RYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVE 354

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  W+L  P +   LHD++G EFE  Y  YE++      +  R + A +LW  ++    
Sbjct: 355 ANEDWSLMCPHKCPGLHDVWGDEFEKLYVKYEQEG-----RANRTVKAQSLWFAIIESQV 409

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L       
Sbjct: 410 ETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPE 469

Query: 615 Q-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           + +D+ KL    +T  R L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L+  P
Sbjct: 470 KTYDFKKLKEVTKTVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALILMRYP 529

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S EA  +  +  E I F A+ AS ELAQ+ G Y +++GS   +G+   D       + 
Sbjct: 530 YESEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYD-------MW 582

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D+     T    W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y + 
Sbjct: 583 DKTP---TGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRR 639

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI  
Sbjct: 640 VLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWEISV 699

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
              I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  
Sbjct: 700 KSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAI 759

Query: 913 KSTLKGVDGKLNAVPVTDPN 932
           + T   VD K++A+ +   N
Sbjct: 760 QFT---VDKKMSALKINGQN 776


>gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
 gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
          Length = 787

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/788 (36%), Positives = 450/788 (57%), Gaps = 47/788 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+T  
Sbjct: 1   MYVLKRDGRQEKVHFDKITSRIQKLCYGLNMDFVDPTKITMKVINGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +KA    M+ LY      ++  
Sbjct: 61  AETAATMTVKHPDYATLAARIAISNLHKET--------KKAFTDVMEDLY-----NWVNP 107

Query: 263 GVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                + ++ + +MD    +   L + + Y+RDF + Y G++ L   Y L I+G   E P
Sbjct: 108 KTNQHSPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MRVA+G+  ++ +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+ 
Sbjct: 168 QHMLMRVALGIHYEDLDA---AIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMK 224

Query: 378 DD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           DD + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+TA 
Sbjct: 225 DDSIDGIYETLKQCALISKSAGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTAR 284

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG KR GA   YLE WH D+ EFLD RKNTG + +R  D+  A WIPDLFMKRV +
Sbjct: 285 YVDQGGNKRPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEE 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTL  P E   L D +G+EFE  YE YE+ A +G     R + A  +W  ++    E
Sbjct: 345 NGEWTLMCPHECPGLEDCWGEEFEKLYEGYEK-AGKGR----RTVKAQQVWYAIIEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANN 614
           TG+P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI +  +   + 
Sbjct: 400 TGNPYMLYKDACNSKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDG 459

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D++KL        R L+ +ID+N + + +A+ SN  HR IG+G+ G      L+  P+
Sbjct: 460 TYDFEKLKEVTVVITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPF 519

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I + A+ AS E+A+E G Y +++G    +G+F  D   +      
Sbjct: 520 ESEEAQHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTP---- 575

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T    W  LK++VK  G+RNS  +A  PTA+ A I G ++SI+    N+Y +  
Sbjct: 576 ------TDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRV 629

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+ +L +  LW+E M + +  ++GS+ NIE IP+ ++ ++ T +EI   
Sbjct: 630 LSGEFQVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQK 689

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT---- 909
            +I+ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+R A+    
Sbjct: 690 TVIKMAADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQ 749

Query: 910 -SVEKSTL 916
            +V+KS L
Sbjct: 750 FTVDKSKL 757


>gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
 gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
          Length = 824

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/763 (37%), Positives = 434/763 (56%), Gaps = 53/763 (6%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++  L    P+YA + AR          ++ ++KK
Sbjct: 41  LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARI--------AVSNLHKK 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    M+ LY     R    G +A L+ + +      +   L ++++Y+RDF F+Y 
Sbjct: 93  TKKSFSETMEALYNYKNPR---TGQEASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYF 149

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRVA+G+   + E    A++ Y+ +S   F  ++P
Sbjct: 150 GFKTLERSYLLRMNGEVVERPQQMLMRVAVGIHKDDIES---AIQTYHAMSERWFTHASP 206

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFNSGT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 207 TLFNSGTPRPQLSSCFLLCMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRATGSYIR 266

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   Y+E WH DV EFLDLRKN G +  
Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYIEPWHADVFEFLDLRKNHGKEEA 326

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  +  W+LF P+E  DL + +G +FE  Y  YER+      
Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAQDLAECWGADFERLYTQYEREG----- 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  + + A  LW  +L    ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S 
Sbjct: 382 RARKVVRAQQLWFAILEAQVETGNPYMLYKDSCNKKSNQQNLGTIKCSNLCTEIIEYTSP 441

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
           +E AVCNL SI L                         N  FD++KLA   + A R L+ 
Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAPNRFFDFEKLAEMTQMATRNLNK 501

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N +   KA+KSN  HR IGLG+ G      +L +P+ SPEA E+  +  E I + A
Sbjct: 502 IIDVNYYPHPKAQKSNMRHRPIGLGVQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAA 561

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +SAS ELA+  G Y +++GS   QG+   D  G+             SR  W  L+ R+ 
Sbjct: 562 LSASCELAERDGTYETYEGSPVSQGILQPDMWGV-------KPTGVGSRCDWPALRDRIA 614

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  
Sbjct: 615 RHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + ++L   +GS+ +++ IP +LK ++ T +EI    L++ A+ R  +IDQ+QS N
Sbjct: 675 LWSPELKNELVAANGSVADLD-IPVELKALYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++ +P+  KL  ++  AW  GLKT  YYLR+++A    K T+
Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTV 776


>gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 789

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/826 (36%), Positives = 444/826 (53%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY L    G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V +
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460

Query: 602 LG------SINLLAHFANNQ--------------------------FDYDKLASTIRTAV 629
            G       I+ L     N+                          +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis]
 gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis]
          Length = 810

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/766 (37%), Positives = 440/766 (57%), Gaps = 47/766 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL++  V    +  +    +Y G+  ++L+T    ++ ++  K P+YA + AR 
Sbjct: 32  ISKLCYGLKNEFVKPINITMKVISGIYQGVKTTELDTLAAETAASMTTKHPDYAILAARI 91

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ LY      Y+  +    + L+ +  +D    + 
Sbjct: 92  EVSNLHKET--------KKVFSEVMEELY-----NYVNPKNNKHSPLISKETLDIIQKHA 138

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RD+ + Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 139 DRLNSAIIYDRDYQYNYFGFKTLMRSYLLKINGKVAERPQHMLMRVSVGIHGEDIDA--- 195

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S   F  ++PTLFN+GT  PQ+SSCFL T+ DD + GI+G L+  A+++K +
Sbjct: 196 AIETYNLMSEKWFTHASPTLFNAGTNRPQMSSCFLLTMSDDSIEGIYGTLRTCALISKNA 255

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V + TA  V+QGG KR GA   YLE WH
Sbjct: 256 GGIGVNVHCIRAAGSYIAGTNGHSNGLVPMLRVYDSTARYVDQGGNKRPGAFAIYLEPWH 315

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  +  W+L  P++   L D YG+
Sbjct: 316 ADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKRVEADGMWSLMCPNQCPGLQDCYGE 375

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +FE  YE YE Q      K  R+I A  LW  +L    ETG P++ +KD CN +S Q+++
Sbjct: 376 KFEKLYEKYESQG-----KYMRQIKAQKLWFAILESQTETGTPYMLYKDACNSKSNQKNL 430

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
           G +  SNLCTEI   S+ +E AVCNL SI  L  F N      +F++ KL    +   + 
Sbjct: 431 GTIKCSNLCTEIVEYSAPDEVAVCNLASI-ALNRFVNVDKSPPEFNFQKLFEVTQVVTKN 489

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +ID+N + + +A+KSN  HR IG+G+ G   A  L+  P+ S +A E+     E I 
Sbjct: 490 LNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFILMRYPFESQKAQELNKLIFETIY 549

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           + A++AS +LA   G Y +++GS   QG+   D   +            ++   W+ LKK
Sbjct: 550 YGAVTASCDLAATNGPYETYEGSPASQGLLQYDLWNVTP----------SNLWDWEALKK 599

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L 
Sbjct: 600 KVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQIVNHHLLKDLT 659

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +  LW++ M + L  ++GSI +I+ IP DLK ++ T +EI    LI+ A+ R  +IDQ+Q
Sbjct: 660 EMGLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTVWEIKQRVLIDMAADRGAFIDQSQ 719

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           S N+++ +P+  KL  ++   W  GLKT  YYLRSR A +  + T+
Sbjct: 720 SFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRPAVNAIQFTV 765


>gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 789

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/825 (36%), Positives = 446/825 (54%), Gaps = 111/825 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +       EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P++
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602
            FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V + 
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 603 G------SINLLAHFANNQ--------------------------FDYDKLASTIRTAVR 630
           G       I+ L     N+                          +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W 
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV     
Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                     +  +  D  + +  A+E+D   L+++A+ R KWI
Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
 gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
          Length = 841

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 291/766 (37%), Positives = 433/766 (56%), Gaps = 57/766 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++ ++  K P+YA++ AR  +  L +  L      
Sbjct: 40  LVAQKVAVGVYKGVTTSELDELAAETAASMTSKHPDYAQLAARIAVSNLHKNTL------ 93

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
             K+    M+ +Y     R    G  + LL + + +    +     +++ Y+RDF ++Y 
Sbjct: 94  --KSFSETMKVMYEHVNKR---NGKWSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYF 148

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L ++G  +E PQ   MRVA+G+  K+ EK   A++ Y++LS      ++P
Sbjct: 149 GYKTLERSYLLRVDGKIVERPQHLLMRVAIGIH-KDVEK---AIDTYHMLSERWMTHASP 204

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFNSGT  PQLSSCFL  + +D + GI+  L+E A ++K +GG+G     +R   ++I 
Sbjct: 205 TLFNSGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 264

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ ++LDLRKN G +  
Sbjct: 265 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEA 324

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    W  DLFMKRV  N  WTLF P+E   L D +G+EFE  YE YE      E 
Sbjct: 325 RARDLFYGLWTNDLFMKRVEANGEWTLFCPNEAPGLADCWGEEFEALYEKYE-----AEG 379

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW  +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 380 KGKKTVKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIRSSNLCTEIVEYTSP 439

Query: 595 EETAVCNLGSINLLAHF-----------------------ANNQFDYDKLASTIRTAVRV 631
           EETAVCNL SI L                           AN  FD+DKLA   R   R 
Sbjct: 440 EETAVCNLASIALPRFVIENNPQSPTGRTEAKKLRGSIGAANRYFDHDKLAEITRKVTRN 499

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +ID+N + +E A++SN  HR IGLG+ G      LL +P+ SPEA ++  E  E I 
Sbjct: 500 LNRIIDVNYYPVETARRSNMKHRPIGLGVQGLADVFILLGMPFDSPEAKKLNAEIFETIY 559

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A++ S ++A+  G Y S+ GS    GV   D  GL         M    R  W  L+ 
Sbjct: 560 FAALTESNDIAKRDGTYESYPGSPVSNGVLQPDMWGL-------TEMPGGDRHDWTGLRT 612

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L+++L 
Sbjct: 613 KISEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLT 672

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +  LWD ++ ++L  ++GS+ +++ IPD+LK+I+ T +EI    L++ A+ R  +IDQ+Q
Sbjct: 673 EMGLWDPSLKNELIANNGSVQSLD-IPDNLKEIYKTVWEIKQRILVDMAADRGAFIDQSQ 731

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           S N+++ + +  KL  ++  AW  GLKT  YYLRSR+A    K T+
Sbjct: 732 SFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAVKFTV 777


>gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori B38]
 gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori B38]
          Length = 788

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/829 (38%), Positives = 451/829 (54%), Gaps = 109/829 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENTEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------EETAVCNLGSI 605
           FKD  N  +P  H G++ SSNLCTEI  N++                  EE  +  + + 
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKEL--VTTD 461

Query: 606 NLLAHFANNQFDYD-----------KLASTIRTAV------------------RVLDNVI 636
           N +   AN     D           K+A   +TAV                  RV+  +I
Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521

Query: 637 -------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                  D+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSVE 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                 W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 701 -----TWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QSLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
 gi|30316299|sp|Q9UW15|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene)
           [imported] - Neurospora crassa
 gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24)
           [Neurospora crassa]
 gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
          Length = 929

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/779 (36%), Positives = 439/779 (56%), Gaps = 56/779 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V++ +Y    P+   H  M         + + E V   + H+   
Sbjct: 82  AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E
Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  + +D + GI+  L+  AM+
Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN  WTL  P E   L D
Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE YE++      K  + + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  +D+ KL    +  VR
Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  A ++  +  E I
Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++AS +LA+E+G Y++++GS   QG+   D   +            T+   W  LK
Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923
           QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A      +V++  L+  D ++
Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765


>gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 929

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/779 (36%), Positives = 439/779 (56%), Gaps = 56/779 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V++ +Y    P+   H  M         + + E V   + H+   
Sbjct: 82  AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E
Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  + +D + GI+  L+  AM+
Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN  WTL  P E   L D
Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE YE++      K  + + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  +D+ KL    +  VR
Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQVVVR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  A ++  +  E I
Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++AS +LA+E+G Y++++GS   QG+   D   +            T+   W  LK
Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923
           QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A      +V++  L+  D ++
Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765


>gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola
           taffensis DSM 16823]
 gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola
           taffensis DSM 16823]
          Length = 789

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/823 (36%), Positives = 455/823 (55%), Gaps = 50/823 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE--TA 201
           + ++  DG   +    ++   + + C GL   VS + V  +  + +YDG++ + L+   A
Sbjct: 1   MYVLKRDGRKEAVKFDKITARIIKMCYGLDPLVSPEAVAMKVIEGIYDGVTTTVLDNLAA 60

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            + +++T+    P+YA + +R  +  L +E         +K+    M+ LY     +Y++
Sbjct: 61  EVAAAKTI--DHPDYALLASRIAVSNLHKET--------KKSFSEVMEDLY-----KYVD 105

Query: 262 --EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G +A L+ + + +    +   L + + Y+RDF ++Y G + L   Y L   G   E 
Sbjct: 106 PKTGQRASLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAER 165

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+   +     +A++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+
Sbjct: 166 PQQMLMRVAVGIHKNDL---PQAIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTM 222

Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            DD + GI+  L+  A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA
Sbjct: 223 KDDSIEGIYETLKSCAQISQSAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTA 282

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKG+   Y+E WH DV +FLDL+KNTG +  R  D+  A WIPDLFMKRV 
Sbjct: 283 RYVDQGGGKRKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVE 342

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +N  WTL  P E   L D +G EFE  Y  YE +      K  + I A  LW K+L    
Sbjct: 343 ENGDWTLMCPHECPGLSDTFGAEFEALYTQYETEG-----KGRKTIKAQDLWFKVLESQI 397

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-N 613
           ETG P++ +KD  N +S QQ++GV+ SSNLCTEI   ++ +E AVCNL S+ L  +   +
Sbjct: 398 ETGTPYMLYKDAANAKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTED 457

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +FD+DKL      A   L+ +ID N + +E+A+KSN  HR IGLG+ G      +L  P
Sbjct: 458 GKFDHDKLFEVTYQATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYP 517

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA  +  E  E I + A++AS +LA   G Y ++ GS   +GVF  D  G+     
Sbjct: 518 FESEEARALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTP--- 574

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  TSR  WD LK+ V   G+RNS  +A  PTA+ A I G ++  +P   N+Y + 
Sbjct: 575 -------TSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRR 627

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F +VN  L+ +L +  LW + M   L   +GS+ NI  IP  +K ++ TA+EI  
Sbjct: 628 VLSGEFIIVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQ 687

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +IE A+ R  +I Q+QSLN++++  +  KL  ++   W  GLKT  YYLR+++AT   
Sbjct: 688 KAIIEQAADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAI 747

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT--ECEVC 953
           K T   VD  +   P     +         +C+ D    CE+C
Sbjct: 748 KFT---VDKAVTEEPAAISAAELEEQQAAIACSLDNPDNCEMC 787


>gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 789

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 303/825 (36%), Positives = 447/825 (54%), Gaps = 111/825 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +       EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P++
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602
            FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V + 
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 603 G-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAVR 630
           G                  + ++  + N+                +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W 
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV     
Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                     +  +  D  + +  A+E+D   L+++A+ R KWI
Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
 gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
          Length = 903

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/802 (36%), Positives = 446/802 (55%), Gaps = 59/802 (7%)

Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y       +     + PE +        +  + H+  +D 
Sbjct: 82  AVSNLHKQTKKQWSSVVSDLYHYVNPKNNRPSPMIAPETY--------EFVMKHKEELDS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRV++G+     E  
Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIMRVSVGIWGDNVE-- 184

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L+  AM++K
Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G+ P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGITPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D Y
Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  YE YE+ A +G     + I A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GDEFEALYEKYEK-AGKGR----KTIKAQKLWYAVLEAQTETGNPFMLYKDHCNRKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L A+  + N  +D+ KL    +  VR L
Sbjct: 419 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDFKKLHQVTQVVVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + + +A+ SN  HR IGLG+ G   A   L +P+ SPEA E+  +  E I  
Sbjct: 479 NRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEAKELNKQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++ S +LAQE G YS+++GS   QG+   D   +            T    W +LK +
Sbjct: 539 AALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWNV----------KPTDLWDWADLKSQ 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L  
Sbjct: 589 IKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW ++M + +   +GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 MGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD---GKL 923
           LN+++ +P+  K+  ++   W +GLKT  YYLR+++A      +V+K  LK  D   GK 
Sbjct: 709 LNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDKEALKVADTNVGKE 768

Query: 924 NAV----PVTDPNSSTHSLGIP 941
            ++    P+   NSS  ++  P
Sbjct: 769 RSLKKRSPMPSYNSSAAAVPRP 790


>gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 777

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/739 (36%), Positives = 432/739 (58%), Gaps = 29/739 (3%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +  + +YD ++ ++L+     ++       P+++ + AR  +  L +  L +  K  
Sbjct: 39  IAKKVIQGIYDNITTTELDNLAAETAAAQTTIHPDFSVLAARIAVSNLHKNTLKSFSKTA 98

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           Q    +E      +     I E +  +++ ++  + D     + + Y+RD+ F+Y G + 
Sbjct: 99  Q--LLYEYTDPITQTHAPLISEEI-YKIIRKNADELD-----SSVIYDRDYNFDYFGFKT 150

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y +  NG   E PQ  FMRVA+G+     E  + A+E YNL+S   F+ +TPTLFN
Sbjct: 151 LERSYLIRTNGKVTERPQHLFMRVALGIY---KEDIQAAIETYNLMSEKWFIHATPTLFN 207

Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +GT  PQ+SSCFL ++ +D + GIF  L+  A++++ +GG+G     +R  G++I GT G
Sbjct: 208 AGTPKPQMSSCFLLSMTEDSIAGIFDTLKRCALISQSAGGIGVSIHNIRSTGSYIKGTGG 267

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G+IP L+V NDTA  V+QGG KRKGA+  Y+E WH+D+ +F+D+RKN G +  R  D
Sbjct: 268 ISNGIIPMLRVFNDTARYVDQGGGKRKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARD 327

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A WIPDLFM+RV  +  W+LF P+E   L+++YG++F   Y  YE +      K  +
Sbjct: 328 LFPALWIPDLFMQRVEADQMWSLFDPNEAQGLYEVYGEKFNELYTTYENEG-----KFRK 382

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I A  LW  +L    ETG P++ +KD  N +S Q+++G + SSNLCTEI   ++++E A
Sbjct: 383 QIKARELWTAILEAQIETGTPYMCYKDAVNEKSNQKNIGTIRSSNLCTEIMEYTNADEVA 442

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL S+ L  + ++  FD+ KL    +   R L+ +ID N + I + K SN  HR IGL
Sbjct: 443 VCNLASLALPRYVSSGGFDFQKLYEVTKIVTRNLNKIIDGNYYPIPETKTSNDRHRPIGL 502

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G      LL +P+ SPEA  +  +  E I F ++ AS++LA+E+GAYSSF GS   +
Sbjct: 503 GVQGLADVFLLLRLPFESPEARRLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLSE 562

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G F  D   ++           + R  W++L++ V T G+RNS  +A  PTA+ + I G 
Sbjct: 563 GKFQFDLWQVVP----------SDRWDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGN 612

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++  +P   N+Y +  +SG+F VVN FL+ +L +  LW+  M + L   +GS+ NI  IP
Sbjct: 613 NECFEPYTSNIYNRRVLSGEFVVVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIP 672

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            +LK+++ T +EI    +I+ A+ R  +I Q+QSLNL++ EP+  KL  ++  AW  GLK
Sbjct: 673 TELKELYKTVWEIKQKTIIDMAAERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLK 732

Query: 899 T-TYYLRSRSATSVEKSTL 916
           T  YYLR+++A    K T+
Sbjct: 733 TGMYYLRTKAAVDAIKFTV 751


>gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 789

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 306/825 (37%), Positives = 448/825 (54%), Gaps = 111/825 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +       EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P++
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVC--- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+                    EE  V    
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDG 461

Query: 601 ----------NLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAVR 630
                      L SI+     ++  + N+                +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W 
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWV 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV     
Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                     +  +  D  + +  A+E+D   L+++A+ R KWI
Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 789

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/826 (36%), Positives = 446/826 (53%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V +
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460

Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629
            G                  + ++  + N+                +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 872

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/757 (37%), Positives = 432/757 (57%), Gaps = 43/757 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L        +K+ +K     ++ LY      Y+  +    A ++   M +  + + 
Sbjct: 82  AVSNL--------HKQTKKQFSAVIEDLY-----HYVNPKNNKAAPMISGEMYETVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  +  EK   
Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGENIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K +
Sbjct: 186 AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIEGIYDTLKTCAMISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N  WTLF P+E S L D+YG+
Sbjct: 306 SDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFCPNEASGLADVYGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE YER+  RG     R + A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFDALYEKYEREG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI    + +E AVCNL S+ L      A  ++D+ KL    +  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 481 IIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS+ELA+E G Y +++GS   QG+   D                T    WD LK ++ 
Sbjct: 541 LTASIELAKEHGTYETYEGSPVSQGILQYDM----------WERTPTDLWDWDSLKAQIS 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           +++ EP+  K+  ++   W MGLKT  YYLR+ +A++
Sbjct: 711 IHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 747


>gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 789

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/825 (36%), Positives = 448/825 (54%), Gaps = 111/825 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVTKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YK+      +       EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKRVNGMNRYNH---LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNSQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE ++L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMSLLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDIGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P++
Sbjct: 347 DPADTADLCDLYGEAFEKRYEKYEKDESITKEI-----VEAKDLWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------------------- 594
            FKD  N  +P  HVG++ SSNLCTEI  N+                             
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDG 461

Query: 595 --EETA--VCNLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAVR 630
             E+ A  +  L SIN     ++  + N+                +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSINGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747
           SF AI+AS  LA E+G+Y  FKGS W +G+FPID     A+   +R+ L     S   W 
Sbjct: 582 SFEAINASSNLALEKGSYEDFKGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDWA 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV     
Sbjct: 640 KLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV----- 694

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                     +  +  D  + +  A+E+D   L+++A+ R KWI
Sbjct: 695 --------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWI 728

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 789

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/826 (36%), Positives = 446/826 (53%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V +
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460

Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629
            G                  + ++  + N+                +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 789

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/826 (36%), Positives = 445/826 (53%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVCNL 602
           + FKD  N  +P  HVG++ SSNLCTEI  N+                    EE  V   
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAID 460

Query: 603 GS-------INLLAHFANNQ--------------------------FDYDKLASTIRTAV 629
           G        I+ L +   N+                          +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDNIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax
           SaI-1]
 gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative
           [Plasmodium vivax]
          Length = 848

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/790 (36%), Positives = 438/790 (55%), Gaps = 55/790 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L        +K          
Sbjct: 87  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNL--------HKNTSDDIGEVA 138

Query: 249 QCLYPEYFCRYIE-EGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDR 304
           + LY     +Y +  G  A L+ + + +F + +   L  ++ Y RDF ++Y G + L   
Sbjct: 139 EALY-----KYTDVRGRPASLISKEVYEFMIEHKDRLNKEIDYTRDFNYDYFGFKTLERS 193

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING  IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT 
Sbjct: 194 YLLRINGKIIERPQHLLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTP 250

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQ+SSCFL  +  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G
Sbjct: 251 RPQMSSCFLLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNG 310

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A
Sbjct: 311 LVPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYA 370

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+PDLFMKRV +N  WTL  P+E   L + +G+EFE  Y  YE + + G+    + + A
Sbjct: 371 VWVPDLFMKRVKENKNWTLMCPNECPGLSESWGEEFEKLYTKYEEE-NMGK----KTVLA 425

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL
Sbjct: 426 QDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNL 485

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            SI L         +F++ KL    +   R LD +I+ N + +E+AK+SN  HR IG+G+
Sbjct: 486 ASIALCKFVDVEKREFNFKKLYEITKIITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGV 545

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL  PY S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+
Sbjct: 546 QGLADTFMLLRYPYESDSAKELNKRIFETMYYGALEMSMELAQLYGPYETYQGSPASQGI 605

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   +  + +            WDELK ++K  G+RNS  +A  PTA+ + I G ++
Sbjct: 606 LQFDMWNVKVDKK---------YWDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNE 656

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP D
Sbjct: 657 SFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPAD 716

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT 
Sbjct: 717 LKELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTG 776

Query: 900 TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPV-----------TDPNSSTHSLGIPSS 943
            YYLR+++AT     +V+    K      NA PV           +  ++ T ++  P  
Sbjct: 777 AYYLRTQAATDAIKFTVDTQVAKNAAKMKNAEPVAITREVSRETISTDSTVTQNVVCPLR 836

Query: 944 CTSDTECEVC 953
             +D +C +C
Sbjct: 837 RNNDDQCLMC 846


>gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni RM1221]
 gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni RM1221]
 gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 789

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 305/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------SEETAVC-- 600
           + FKD  N  +P  HVG++ SSNLCTEI  N+                    EE  V   
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAID 460

Query: 601 -----------NLGSIN-----LLAHFANNQ---------------FDYDKLASTIRTAV 629
                       L SI+     ++  + N+                +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|331235025|ref|XP_003330173.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309309163|gb|EFP85754.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 805

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/750 (37%), Positives = 428/750 (57%), Gaps = 43/750 (5%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +  + P+YA + AR  +  L +E         +K     ++ LY   +   I     + +
Sbjct: 1   MTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLY--TYVNPINGRPSSMI 50

Query: 269 LHES--MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
             E+   +  +   L + + Y+RDF + Y G + L   Y L I G   E PQ   MRVA+
Sbjct: 51  SQETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIKGKVAERPQHMLMRVAV 110

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFG 385
           G+   + EK   A+  YNL+S  +F  ++PTLFN+GT HPQLSSCFL  +  D + GI+ 
Sbjct: 111 GIHGMDVEK---AIRTYNLMSEKYFTHASPTLFNAGTPHPQLSSCFLVASKSDSIDGIYD 167

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KR 444
            L+  AM++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KR
Sbjct: 168 TLKTCAMISKSAGGIGLHINNIRATGSYISGTNGYSNGIVPMLRVFNNTARYVDQGGNKR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   YLE WH DV ++LDLRKN G +  R  D+  A WIPDLFM RV +N  W LF P
Sbjct: 228 PGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFCP 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E   L D+YG+EFE  +  YE+     E +  + + A  LW  +L    ETG+P++ +K
Sbjct: 288 AEAPGLADVYGEEFEALFAKYEK-----ENRAKKTVKAQKLWYAILEAQTETGNPFMLYK 342

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D  N +S Q+++G + SSNLCTEI   S+ +E AVCNL SI L  +  + ++D++KL   
Sbjct: 343 DAANKKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIVDGKYDFNKLHEV 402

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +     L+ +ID+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA ++  
Sbjct: 403 TKEVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNT 462

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E +   ++ AS ELA + G Y +F GS   QG+   D   +           + S L
Sbjct: 463 QIFETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWNV-----------KPSDL 511

Query: 745 -PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD LK++VKT G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN
Sbjct: 512 WEWDSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVN 571

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L+ EL +  LWD+ M + +  H GSI NI  IP ++K ++ T +EI    +++ A+ R
Sbjct: 572 PWLLKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADR 631

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
             +IDQ+QSLN++L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T   VD K
Sbjct: 632 GAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFT---VDKK 688

Query: 923 LN-----AVPVTDPNSSTHSLGIPSSCTSD 947
           L      A       SS+ +L +PSS  S+
Sbjct: 689 LQDEAKAANKAATLVSSSATLLVPSSAPSN 718


>gi|39978231|ref|XP_370503.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
 gi|145013418|gb|EDJ98059.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
          Length = 909

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/756 (37%), Positives = 434/756 (57%), Gaps = 45/756 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDPVAITQKVISGVYGGVTTIQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L             K T  +   +  + F  Y+  + G  + ++ +   D  + + 
Sbjct: 82  AVSNL------------HKQTKKQFSSVVSDLF-HYVNPKNGKLSPMIAQDTYDCVMRHK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+     E   R
Sbjct: 129 EDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDNIE---R 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
            +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L+  AM++K +
Sbjct: 186 VIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIEGIYDTLKTCAMISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D YG+
Sbjct: 306 ADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCYGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE QA +G     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYEKYE-QAGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDHCNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   S+ +E AVCNL S+ L     +   ++D++KL    +  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDFEKLHEVTQVVVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +I++N + +++A+ SN  HR IGLG+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 481 IIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPEARDLNKKIFETIYHAA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRV 753
           ++AS +LA+E+G YS+++GS   QG+   D   +           + S L  WD LK  +
Sbjct: 541 LTASCKLAEEQGPYSTYEGSPVSQGILQYDMWNV-----------KPSDLWDWDALKANI 589

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L + 
Sbjct: 590 KQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVEL 649

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW + M + +    GSI NI  IP+D KK++ T +EI    +++ A+ R  +IDQ+QSL
Sbjct: 650 GLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQMAADRGAFIDQSQSL 709

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           N+++ +P+  K+  ++   W +GLKT  YYLR+++A
Sbjct: 710 NIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 745


>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia]
 gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]
          Length = 812

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 299/819 (36%), Positives = 453/819 (55%), Gaps = 51/819 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               +  L    P+YA + AR  +  L +E       V   +Y    K T+ ++  L  E
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +              H +++  +   L + + Y+RDF + Y G + L   Y L  NG   
Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL 
Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+
Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKR
Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   LH+++G EFE  YE YE++      +  R + A +LW  ++  
Sbjct: 353 VEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L     
Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVT 467

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             + +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+ 
Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S EA  +  +  E I + A+ AS ELAQ  GAY +++GS   +G+   D       
Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYD------- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++    T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI
Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEI 697

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
                I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +
Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             + T   V+ K  AV +   N +    G P     D E
Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791


>gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 789

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/826 (36%), Positives = 447/826 (54%), Gaps = 113/826 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +        +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYN-------HLREYFEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L + +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           F P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L   FETG P+
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILLNYFETGLPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------------------SSEETAVCN 601
           + FKD  N  +P  HVG++ SSNLCTEI  N+                     E+  V +
Sbjct: 401 LCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVID 460

Query: 602 LG-----------------SINLLAHFANNQ---------------FDYDKLASTIRTAV 629
            G                  + ++  + N+                +  + +   + TA+
Sbjct: 461 GGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAI 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 521 RMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQ 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPW 746
           ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L     S   W
Sbjct: 581 ISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF--DQSECDW 638

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 639 VKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV---- 694

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+E+D   L+++A+ R KW
Sbjct: 695 ---------------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKW 727

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 728 IDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei]
 gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei]
          Length = 786

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/755 (37%), Positives = 436/755 (57%), Gaps = 42/755 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     ++ ++  + P YA + AR  +  L        +KK  K     M
Sbjct: 53  LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
           + L+ E+   +   G  A ++ +   ++++ +   L + + Y+RD+++ Y G + L   Y
Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   +E PQ   MRV++G+     E    A+E YNL+S  +   ++PTLFNSGT  
Sbjct: 162 LLKINKEIVERPQQMLMRVSIGI---HGEDIAAAIETYNLMSERYMTHASPTLFNSGTCR 218

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL T+ +D + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+
Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V N+TA  V+QGG KR GA   YLE WH DV EF+ LRKNTG +  R  D+  A 
Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLAL 338

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV ++  W+L  P E   L D +G+EFE  Y  YE      E +V + + A 
Sbjct: 339 WIPDLFMKRVEKDQNWSLMCPCECPGLDDCWGEEFEALYAKYE-----AEGRVRKTVKAR 393

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +++   ETG P+IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL 
Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLA 453

Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L  +     +FD+ KLA   +   + L+ +ID+N + +E+A+ SN  HR IGLG+ G
Sbjct: 454 SIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQG 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                 L+  P+ S +A ++     E I + A+ AS ELA+  G YS+++GS   +G   
Sbjct: 514 LADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQ 573

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T +  W  L+K++ T G+RNS  MA  PTA+ A I G ++SI
Sbjct: 574 FDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESI 623

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  +SGDF +VN  ++ +L +R LW + M + L  ++GSI NI  IP D+K
Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIK 683

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
           +++ T +EI    +IE A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  Y
Sbjct: 684 ELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMY 743

Query: 902 YLRSRSAT-----SVEKSTLKG-VDGKLNAVPVTD 930
           YLR++ A      +V+K  LK  VD K+ A+   D
Sbjct: 744 YLRTKPAVNAVQFTVDKGALKAKVDPKVAALQQQD 778


>gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 873

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/759 (37%), Positives = 430/759 (56%), Gaps = 47/759 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAVLAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V+  +Y       +     + PE +        +  + H   ++ 
Sbjct: 82  AVSNLHKQTKKQFSAVIEDLYHYVNPKNNKAAPMISPEMY--------ETVMKHADELNS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  +  EK 
Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGENIEK- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K
Sbjct: 186 --AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 SAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N  WTLF P+E   L D+Y
Sbjct: 304 WHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFCPNEAPGLADVY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+  YE YE++  RG     R + A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GEEFDALYEKYEKEG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI    + +E AVCNL S+ L      A  ++D+ KL    +  VR L
Sbjct: 419 NLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQVLVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I  
Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++AS+ELA+E G Y +++GS   QG+   D       + D      T    WD LK +
Sbjct: 539 GALTASIELAKEYGTYETYEGSPVSQGILQYD-------MWDRTP---TDLWDWDALKAQ 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           ++  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L  
Sbjct: 589 IREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 LGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           LN+++ EP+  K+  ++   W MGLKT  YYLR+ +A++
Sbjct: 709 LNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 747


>gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/800 (36%), Positives = 440/800 (55%), Gaps = 57/800 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYACLAARIAVSNL--------HKT 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
           P+K+    ++ +Y     R    G+KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  PKKSFSETIKDMYYHVSER---SGLKAPLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I G  +E PQ   MRV++G+   + E     ++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIES---VIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YL+ WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLDPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G++FE  Y NYE++      
Sbjct: 324 RARDLFYALWVPDLFMQRVQSNGQWSLFCPNEAPGLADCWGEDFEKLYINYEKEG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L  +                      N  FD+DKLA         L+ 
Sbjct: 439 AETAVCNLASIALPRYVREKGVPSESQPSKLVGSRGSKNRYFDFDKLAEVTALVTTNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK+SN  HR IG+G+ G      LL + + S EA ++  +  E I +HA
Sbjct: 499 IIDVNYYPVETAKRSNLRHRPIGIGVQGLADTFMLLGMAFDSREAQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA + G Y ++ GS   +G+   D  G+            + +  W  L++ + 
Sbjct: 559 LKASSELAAKEGPYETYAGSPVSKGIIQPDMWGVTP----------SDKWDWVALREMIT 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L +  
Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLYDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW  A+ + + Y DGS+  I  IPD+LK+I+   +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 LWSPALKNRIIYEDGSVQKIPEIPDELKEIYKNVWEIKQRTLVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+      L   P T  + 
Sbjct: 729 IHMDQPNFGKLTSLHFHTWSRGLKTGMYYLRSRAAADAIKFTVD--TAMLKEKPKTAVDD 786

Query: 934 STHSLGIPSSCTSDTECEVC 953
            T    +  S T+  +C  C
Sbjct: 787 DTKMAQMVCSLTNREDCLSC 806


>gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
 gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
          Length = 780

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/766 (37%), Positives = 435/766 (56%), Gaps = 50/766 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V + C  L +  V    +  +    +Y+G++  +L+T     + ++    P+YA + AR 
Sbjct: 22  VSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDTLAAEIAASMTTNHPDYALLAARI 81

Query: 224 LLEKLRREVLTTV---------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L +E   T          Y  P+   H  M                 ++  HE ++
Sbjct: 82  AVSNLHKETKKTFSVVMDELYNYVNPKNGKHSPMI----------------SKETHE-II 124

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
                 L + + Y+RD+ + + G + L   Y L I+    E PQ   MRV++G+  ++ +
Sbjct: 125 TKHCERLNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQHMLMRVSVGIHGEDID 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
               A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L++ A++
Sbjct: 185 G---AIETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDDSIEGIYDTLKQCALI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKSAGGIGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ +FLDL+KNTG + +R  D+  A W+PDLFMKRV +N  W+L  P++   LHD
Sbjct: 302 EPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWSLMCPNDCPGLHD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EFE  Y  YE   D G  K  R++ A  LW  +L    ETG P++ +KD CN +S 
Sbjct: 362 TYGEEFEKLYTEYE---DAG--KFIRQVRAQKLWFAILEAQVETGTPYMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRV 631
           Q+++G + SSNLCTEI   +S +E AVCNL SI L      +  FD+ KLA   +   R 
Sbjct: 417 QKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTFDFHKLAEVTKVITRN 476

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +IDIN + + +A+KSN  HR IG+G+ G   A  L+  P+  PEA ++  +  E I 
Sbjct: 477 LNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEARDLNIKIFESIY 536

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           + A+ AS ELA+E G Y +++GS   QG    D    L E +       T    W+ LK+
Sbjct: 537 YGALQASCELAKEVGPYETYEGSPASQGQLQFD----LWEKQP------TDLWNWNSLKE 586

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +K  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L 
Sbjct: 587 DIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLT 646

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
              +W++ M ++L  ++GSI  I  IPDD+K ++ T +EI    LI+ A+ R  +IDQ+Q
Sbjct: 647 DMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDMAADRGAYIDQSQ 706

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           S N+++ EP+  KL  ++  AW  GLKT  YYLR++ A S  + T+
Sbjct: 707 SFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFTV 752


>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]
          Length = 798

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 295/785 (37%), Positives = 439/785 (55%), Gaps = 51/785 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  IQKLCYGLNSDFVDPTAITMKVINGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y    K T        P         G+  +  H   ++ 
Sbjct: 82  AVSNLHKETKKVFSEVIDDLYNMKNKITKK------PTPMISDFHHGIITK--HSDKLNS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            ++Y       +RDF F Y G + L   Y L I+G  +E PQ   MRV++G+  ++ +  
Sbjct: 134 AIIY-------DRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMMRVSVGIHGEDIDA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNLLS   F  ++PTLF + T  PQLSSCFL T+ DD + GI+  L++ A+++K
Sbjct: 186 --AIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSIDGIYETLKQCAIISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 SAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV  +  W+L  P E   L D +
Sbjct: 304 WHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMCPHECPGLADTW 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  Y  YE           RK+ A  LW  ++    ETG P+I +KD CN +S QQ
Sbjct: 364 GEEFEALYTKYEESG-----MYRRKVKAQQLWFAVIESQIETGTPYILYKDACNRKSNQQ 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLD 633
           ++G +  SNLCTEI   SS EE AVCNLGSI L      ++ FD  KL    +   R L+
Sbjct: 419 NLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIPKLKEVTKVLTRNLN 478

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +I+IN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA  +     E I + 
Sbjct: 479 KIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEAQLLNKHIFETIYYG 538

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS ELA++ G Y S+ G    +G+   D  G+            T    W  LKK++
Sbjct: 539 ALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTP----------TDLWDWAALKKKI 588

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ A I G ++SI+    N+YV+  +SG+F VVN  L+ +L + 
Sbjct: 589 NEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFQVVNHHLLRDLTEG 648

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW+E + + +  ++GSI NI+ IPDDLK ++ T +EI    +I+ A+ R  +IDQ+QSL
Sbjct: 649 GLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKMAADRGAFIDQSQSL 708

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGVDGKLNAVP 927
           N+++ EP+  KL  ++  +W +GLKT  YYLR++ A S     V+KS LK ++G  N+  
Sbjct: 709 NIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDKSKLKKMNGVDNSAG 768

Query: 928 VTDPN 932
            T+ N
Sbjct: 769 ATNGN 773


>gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
 gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
          Length = 788

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 315/832 (37%), Positives = 447/832 (53%), Gaps = 115/832 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTEI------------ 588
           FKD    CN       IRS            P  +   +  ++   E             
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 589 ----------------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
                                 T  +   +TAVCNL SINL     N + D  ++   + 
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             VR+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  
Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           ME IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W
Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNYA-CDW 637

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L
Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  + W+                           + +A++ID   LI++A+ RQKW
Sbjct: 698 -----NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726

Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           IDQ QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 727 IDQGQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
 gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
          Length = 812

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/769 (37%), Positives = 441/769 (57%), Gaps = 34/769 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL ++   + V     + +YDG++ S+L+      + T+    P+YA++ AR  
Sbjct: 22  VRKLCYGLNNLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATMTTTHPDYARLAARIS 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281
           +  L        +K  +K+    M  LY EY       G KA LL + + +    +   L
Sbjct: 82  VSNL--------HKNTKKSFSETMVDLY-EYVNP--RTGKKAPLLSDEVYNVIMENADRL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RDF ++Y G + L   Y L +NG   E PQ   MRV++G+ L + +    A+E
Sbjct: 131 DSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSVGIHLNDLDA---AIE 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYDTLKQTAKISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     VR  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   Y+E WH D+
Sbjct: 248 GLSIHNVRATGSYIAGTNGTSNGIVPMLRVYNDTARYVDQGGGKRKGSFAIYVEPWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E  +L +++ +EFE
Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTLMCPNECPNLFNVHSEEFE 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y  YE      E K  + I A  LW K+L    ETG P++ +KD  N +S Q+++G +
Sbjct: 368 ALYLKYE-----AEGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLCTEI   +S +E AVCNL SI L       +FD+ +L    +   + L+ VID N
Sbjct: 423 RSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGEFDHKELFRVTKRVTKNLNKVIDRN 482

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++A+ SN  HR IGLG+ G       L +P+ S EA ++  E  E + F A++AS+
Sbjct: 483 YYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKKLNQEIFETLYFAAVTASM 542

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A+  G Y +++GS   +G F  +  G    ++DE     + R  W +L+K+V   G+R
Sbjct: 543 EMAKIEGPYQTYEGSPMSKGEFQHNLWG----IKDE---ELSGRWDWGKLRKQVAKNGVR 595

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    LW E 
Sbjct: 596 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNLGLWTED 655

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           +  +L   +GSI +I+ IP D+K ++ T +E+    +I+ +  R  +IDQ+QSLNL+++ 
Sbjct: 656 LKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIIDMSRHRGYFIDQSQSLNLFMEG 715

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            +  KL  ++  AW  GLKT  YYLR++SA    K T+K     + AVP
Sbjct: 716 ATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVKKAKKSI-AVP 763


>gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 794

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 298/798 (37%), Positives = 430/798 (53%), Gaps = 107/798 (13%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNYAKVTARFL 224
           A  GL+ VS   +  +      DG+S SD++ ALI   +T IEK     PN+  V AR  
Sbjct: 27  ATEGLEGVSQSELELDAQIKFIDGMSSSDIQDALI---KTAIEKIDIDVPNWTFVAARLF 83

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA-RLLHESMMDFDLVYLAN 283
           +  L   V  T      +A  H            YI+    A R++      +DL  L N
Sbjct: 84  IFNLYHRVGRTTNSVKGEAYSH---------MSDYIKTAQDAGRMIPGLERGYDLEDLNN 134

Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            LK ERD  F YLG++ LYDRY +   N   IE+PQ  FM +AM LA  E +K+ RA EF
Sbjct: 135 YLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHMFMGIAMFLAQDEDDKQARAKEF 194

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y+++S F  M +TPTL N+ T   QLSSC++ + PD++ GIF   +E A+L+KY GG+G 
Sbjct: 195 YDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMALLSKYGGGIGW 254

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           DW  +R LG  I G    + G +PFLK+ ND A+AV+Q G RKGA+  YLE WH+D+ +F
Sbjct: 255 DWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDISDF 314

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN+G++RRR HD+  + WI DLFM+R+ +++ WTLF P++V DL +L+G  FE  Y
Sbjct: 315 LDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWTLFDPNDVKDLSELHGDAFEKRY 374

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE   D   +K   +I A  LW+K+LT  FE+G P++ FKD  N  +P  HVG + SS
Sbjct: 375 IEYEN--DNSIVK--DRIKAKDLWKKILTSYFESGSPFLCFKDNANRANPNAHVGHIRSS 430

Query: 583 NLCTEITLNSSSEETAV---CNLGSINL------------LAHFANNQFDYDKLAS---- 623
           NLCTEI  N++  +  +    + GSI L            +   AN     D +      
Sbjct: 431 NLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVDSGIIKKANKVTALDSVGGKKIF 490

Query: 624 --------------------------------TIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                                            + TA+R+LDNVID+N + + K K +N 
Sbjct: 491 IVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAIRMLDNVIDLNFYPLRKVKATNL 550

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R+IGLG+MG    L    + + S + ++  D+ ME IS++AI +S ELA E+G Y +F
Sbjct: 551 KSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEAISYNAIKSSAELAVEKGKYPTF 610

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W +G+ P D          E  +  T    WD L+ +VK  GMRN   MA+APT++
Sbjct: 611 DGSNWSKGIMPHDHAPQAVNALVEKDLFDTG-YDWDALRAQVKKDGMRNGYLMAVAPTSS 669

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ + G +Q+I+P Y+  + + N+SG   VV                             
Sbjct: 670 ISILVGTTQAIEPVYKRKWYEENLSGLIPVV----------------------------- 700

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIY 889
             + ++  +    +  A+E+D + +I++A+ RQKWIDQ QS N++  LD+ SGK +  IY
Sbjct: 701 --VPKLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQGQSTNIFLSLDKASGKYMHQIY 758

Query: 890 RQAWLMGLKTTYYLRSRS 907
             AW +GLK+TYYLRS+S
Sbjct: 759 TLAWQLGLKSTYYLRSQS 776


>gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus]
 gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus]
          Length = 771

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 438/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + E    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  P+E   L + +G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWSLMCPNECPGLDNAWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTQYEREKRYKNI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK ++++ 
Sbjct: 541 ASCELAEKEGPYDTYAGSYASNGILQYD---LWNVVPSDL-------WNWESLKDKIRSH 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +E + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR+++A+S  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTL 750


>gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus]
          Length = 771

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNMDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + E    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L D++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +E + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPAG1]
 gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori HPAG1]
          Length = 788

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 309/827 (37%), Positives = 447/827 (54%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------ETAVCNLGSINLLAHFAN 613
           FKD  N  +P  H G++ SSNLCTEI  N++           + A+       L+   +N
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTDSN 463

Query: 614 NQFDYDKLAST--------------------------------------IRTAVRVLDNV 635
                +KL ST                                      I+  V ++  +
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +D    +N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|73988083|ref|XP_862202.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           4 [Canis familiaris]
          Length = 822

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/787 (36%), Positives = 446/787 (56%), Gaps = 62/787 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQAD-------------------------RGEIKVFRKISAVALWRKMLT 551
           EFE  YE Y +                              + +V + + A  LW  ++ 
Sbjct: 366 EFEKLYERYGKNMKVIIFNHVFLLFGGSKFQNITLPFSYEKQGRVRKVVKAQQLWYAIIE 425

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  + 
Sbjct: 426 SQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 485

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+
Sbjct: 486 TSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILM 545

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             P+ SPEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +  
Sbjct: 546 RYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP 605

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y
Sbjct: 606 ----------TELWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 655

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +E
Sbjct: 656 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 715

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A 
Sbjct: 716 ISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 775

Query: 910 SVEKSTL 916
           +  + TL
Sbjct: 776 NPIQFTL 782


>gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 26695]
 gi|2500207|sp|P55982|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA)
           [Helicobacter pylori 26695]
          Length = 788

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 316/832 (37%), Positives = 451/832 (54%), Gaps = 115/832 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTE-------ITLNSS 593
           FKD    CN       IRS            P  +   +  ++   E       +T +S+
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 594 ---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
                                        +TAVCNL SINL     N + D  ++   + 
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             VR+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  
Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           ME IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W
Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDW 637

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L
Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  + W+                           + +A++ID   LI++A+ RQKW
Sbjct: 698 -----NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726

Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           IDQ QSLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 727 IDQGQSLNVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori J99]
 gi|7388069|sp|Q9ZLF9|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
           pylori J99]
          Length = 788

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 310/827 (37%), Positives = 446/827 (53%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------ETAVCNLGSINLLAHFAN 613
           FKD  N  +P  H G++ SSNLCTEI  N++           + A+       L+   +N
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSN 463

Query: 614 NQFDYDKLAST--------------------------------------IRTAVRVLDNV 635
                +KL ST                                      I+  V ++  +
Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +D    +N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|72084113|ref|XP_780425.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115956273|ref|XP_001177269.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           [Strongylocentrotus purpuratus]
          Length = 797

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/764 (37%), Positives = 426/764 (55%), Gaps = 47/764 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           ++  C  L    +   ++  +    +Y G++  +L+T    ++ T+  K P+YA + AR 
Sbjct: 25  IQRLCYNLNSDFIDPAVITMKVISGVYPGVTTVELDTLAAETAATMTTKHPDYAVLAARI 84

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L                H E + L+        E       LH  ++  + + + N
Sbjct: 85  AVSNL----------------HKETKKLFSAVMKDLFEYTNPRNGLHSPLISEETMMIIN 128

Query: 284 D--------LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           D        + Y+RDF + Y G + L   Y L ING   E PQ   MRV++G+  K+ + 
Sbjct: 129 DNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHGKDIDA 188

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A++ YNLLS   F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L+  A+++
Sbjct: 189 ---AIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSIDGIYETLKNCALIS 245

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 246 KTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIYLE 305

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FLD +KN G + +R  D+    WIPDLFMKRV  +  WTL  P E   LH++
Sbjct: 306 PWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTLMCPHESPGLHEV 365

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  YE YE+ A RG     + I A ALW  ++    ETG P++ +KD CN +S Q
Sbjct: 366 WGEEFETLYEGYEK-AGRGR----KTIKAQALWYAIIESQTETGTPYMVYKDHCNKKSNQ 420

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           Q++G +  SNLCTEI   SS++E AVCNL SI L     +  FD+ KL          L+
Sbjct: 421 QNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFKKLEEVTMVITENLN 480

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA ++  +  E I + 
Sbjct: 481 KIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKKLNIQIFETIYYA 540

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS ++A + G Y ++KGS   +G+   D  G+            T    W  LK  +
Sbjct: 541 ALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTP----------TDLHDWASLKADI 590

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ A I G +++I+P   N+Y +  +SG+F VVN  L+ +L   
Sbjct: 591 AKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQVVNHHLLRDLTDM 650

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW + M ++L  ++GSI NI  IPDD+K ++ T +EI    +I+ A  R  +IDQ+QSL
Sbjct: 651 GLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAVDRGAYIDQSQSL 710

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++ EP+  KL  ++  AW  GLKT  YYLR+R A    K TL
Sbjct: 711 NIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTL 754


>gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 810

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 294/801 (36%), Positives = 442/801 (55%), Gaps = 57/801 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +     Y G++ + L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCSGFYKGVTTTQLDELAAETAAAMTTNHPDYAILAARVAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y     R    G KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKLMYSHINKR---SGQKASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I+G  +E PQ   MRVA+G+   + E    AV+ Y+L++   F  +TP
Sbjct: 147 GFKTLERSYLLKIDGKIVERPQHMLMRVAIGIHKDDVES---AVKTYHLMAQRWFTHATP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GIF  L+E A+++K +GG+G     VR  G+ I 
Sbjct: 204 TLFNAGTPQPQLSSCFLGCMKDDSIEGIFDTLKECAVISKVAGGIGLSVHNVRATGSFIC 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG+S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G + R
Sbjct: 264 GTNGESNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEER 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM+RV  +  W+LF P+E   L D +G+EFE  Y  YE   DR + 
Sbjct: 324 RARDLFYALWIPDLFMERVRGDGSWSLFCPNEAPGLADCWGEEFEKLYTFYE-DGDRAK- 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              + I A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTE+   +S 
Sbjct: 382 ---KVIPARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSP 438

Query: 595 EETAVCNLGSINLLAHFANNQ---------------------FDYDKLASTIRTAVRVLD 633
            ETAVCNL SI  L  F   +                     FD+ KLA    T    L+
Sbjct: 439 TETAVCNLASI-ALPRFVRERGVPIGSHSSKLVGSRDSKTRYFDFAKLAEITVTITANLN 497

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + ++ A++SN  HR +G+G+ G      LL +P+ S EA ++  +  E I +H
Sbjct: 498 KIIDINYYPVDTARRSNLRHRPMGIGVQGLADTFILLGMPFDSLEAQQLNKDIFETIYYH 557

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ +S ELA   G Y ++KGS   +G+  +D  G++           + R  W+ L++ +
Sbjct: 558 ALKSSSELAAIDGPYETYKGSPVSKGILQMDMWGVIP----------SDRWDWNVLREMI 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L + 
Sbjct: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEI 667

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW  A+ + + Y +GS+  +  IP+ LK I+ T +EI    L++ A  R  +IDQ+QSL
Sbjct: 668 GLWSHALKNKIIYENGSVAKVPEIPEQLKAIYKTVWEIKQKTLVDMAVARGCYIDQSQSL 727

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N+++D+P   KL  ++  AW  GLKT  YYLR+R+A    K T+     K   V  T+  
Sbjct: 728 NIHMDQPDLGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTSVLKHENVNSTNDY 787

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
             T    +  S  +  EC  C
Sbjct: 788 VDTDMAQMVCSLRNREECMAC 808


>gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
 gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
          Length = 870

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/790 (36%), Positives = 442/790 (55%), Gaps = 48/790 (6%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263
           +  +    P+YA + AR  +  L        +K+ +K     ++ LY      Y+  + G
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIEDLY-----HYVNPKNG 107

Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A ++ E   +  + +   L + + Y+RDF ++Y G + L   Y L  NG   E PQ  
Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D 
Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+
Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  
Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF P+E   L D+YG+EFE  YE YE++  RG       I A  LW  +L    ETG+
Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616
           P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++
Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ S
Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +        
Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +
Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTI 689

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910
           ++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +
Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749

Query: 911 VEKSTLKGVD 920
           V++  LK VD
Sbjct: 750 VDQEQLKVVD 759


>gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 867

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/767 (37%), Positives = 433/767 (56%), Gaps = 43/767 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPKHVDAVAITQRVISGVYHGVTTVELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++      K+  + T    + + P+        G  + L+ E   +    +   
Sbjct: 82  AVSNLHKQTT----KQYSQVTKELYEYINPK-------NGKHSPLVSEDTYNIVQKHADE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L ING+  E PQ   MRVA+G+     +   R +
Sbjct: 131 LNSAIVYDRDFQYNYFGFKTLERSYLLRINGNVAERPQHLIMRVAIGI---HGDDIARVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YN +S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + GI+  L+E A+++K +GG
Sbjct: 188 ETYNFMSQKYFTHASPTLFNAGTPHPQMSSCFLVAMRDDSIEGIYDTLKECALISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRATGSYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP E   L D+YG EF
Sbjct: 308 IFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPSEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE++  RG     + I A  LW  +L    ETG P++ +KD CN ++ Q+++GV
Sbjct: 368 EELYERYEKEG-RGR----QTIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQKNLGV 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   SS EETAVCNL SI L A    +     ++++KL    +   R L+ 
Sbjct: 423 IKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWYNFEKLHEITKVVTRNLNR 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + + +A++SN  +R I +G+ G   A   L IP+ SPEA ++  +  E I   A
Sbjct: 483 IIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDSPEAKQLNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRV 753
           + AS ELA E GAY +F+GS   QG+   D           L   + S L  W+ LK ++
Sbjct: 543 LEASNELAVEEGAYETFQGSPASQGILQYD-----------LWDKKPSELWEWESLKAKI 591

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            + G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L   
Sbjct: 592 VSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDL 651

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LWD+ M + +   +GSI N+  IP+ LK ++ T +EI    +I+ A+ R  +IDQ+QSL
Sbjct: 652 GLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTIIDMAADRSAYIDQSQSL 711

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           N++L  P+  KL  ++   W  GLKT  YYLR+++A +  + T+  V
Sbjct: 712 NIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDKV 758


>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba]
 gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]
          Length = 812

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 298/819 (36%), Positives = 453/819 (55%), Gaps = 51/819 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               +  L    P+YA + AR  +  L +E       V   +Y+   K T+ ++  L  E
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKVFSDVFEDLYEHVNKETNQKVP-LVSE 129

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +              H +++  +   L + + Y+RDF + Y G + L   Y L  NG   
Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL 
Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+
Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKR
Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   L D++G EFE  YE YE++      +  R + A +LW  ++  
Sbjct: 353 VEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L     
Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             + +D+ KL    +   + L+ +IDIN + + +AKKSN  HR +G+G+ GF  AL L+ 
Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D       
Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYD------- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++    T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 581 MWDKVP---TNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI
Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWEI 697

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
                I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +
Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             + T   V+ K  AV +   N ++   G P     D E
Sbjct: 758 AIQFT---VNKKQGAVSINGQNGASE--GSPQKFEEDRE 791


>gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
 gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
          Length = 878

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREV---LTTV------YKKPQKATHHEM--QCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++     ++V      Y  P+      M  Q  Y E   R+ +E   A      
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNRRPAPMISQSTY-EIVMRHADEFNSA------ 134

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                       + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAIGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VE---RVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG EFE  YE YE++  RG+    + I A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVV 474

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA  +  +  E
Sbjct: 475 VRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKLLNIQIFE 534

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I    ++AS ELA+  G YSS++GS   QG+   D  G+            T    WD 
Sbjct: 535 TIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----------TDLWDWDS 584

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ 
Sbjct: 585 LKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +ID
Sbjct: 645 DLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922
           Q+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  
Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764

Query: 923 LNAV 926
           +  V
Sbjct: 765 VARV 768


>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans]
 gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]
          Length = 812

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 298/819 (36%), Positives = 452/819 (55%), Gaps = 51/819 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               +  L    P+YA + AR  +  L +E       V   +Y    K T+ ++  L  E
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +              H +++  +   L + + Y+RDF + Y G + L   Y L  NG   
Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL 
Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+
Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKR
Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   LH+++G EFE  YE YE++      +  R + A +LW  ++  
Sbjct: 353 VEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L     
Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVT 467

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             + +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+ 
Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D       
Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++    T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI
Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEI 697

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
                I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +
Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             + T   V+ K  AV +   N +    G P     D E
Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791


>gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 893

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 292/797 (36%), Positives = 447/797 (56%), Gaps = 46/797 (5%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + DG        ++   V   C GL    V    +  +    +Y G++   L+     ++
Sbjct: 10  LSDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETA 69

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEE 262
             +    P+YA + AR  +  L ++      KK   A     +H +            +E
Sbjct: 70  AYMTVTHPDYAILAARIAVSNLHKQT-----KKQWSAVVSDLYHYVNPKNDRASPMISQE 124

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +  + H+  +D  +VY       +RDF ++Y G + L   Y L I+G  +E PQ   M
Sbjct: 125 TYECVMRHKEELDSAIVY-------DRDFQYQYFGFKTLERSYLLKIDGKIVERPQHMIM 177

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E   R +E YNL+SS  F  ++PTLFN+GT  PQLSSCFL  + +D + 
Sbjct: 178 RVAVGIWGDNIE---RVLETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 234

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S GV P L+V N+TA  V+QG
Sbjct: 235 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVTPMLRVFNNTARYVDQG 294

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 295 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 354

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YE+ A +G     + + A  LW  +L    ETG+P+
Sbjct: 355 LMCPNECPGLADCYGEEFEALYEKYEK-AGKGR----KTMKAQKLWYAILEAQTETGNPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L +    ++  +D+
Sbjct: 410 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDEACYDF 469

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +T VR L+ +ID+N + + +A+ SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 470 QKLHEVTQTVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 529

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++ASV+LA+E G YS+FKGS   +G+   D   +          
Sbjct: 530 ARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWNV---------- 579

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    W+ L+++VK  G RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 580 KPSDLWDWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 639

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW ++M + +   +GSI NI  IP ++K ++ T +EI    +++
Sbjct: 640 FQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQRQVVQ 699

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + T  
Sbjct: 700 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFT-- 757

Query: 918 GVDGKLNAVPVTDPNSS 934
            VD +  A+ V D NS+
Sbjct: 758 -VDQQ--ALKVADANSA 771


>gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
 gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
          Length = 872

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/790 (36%), Positives = 442/790 (55%), Gaps = 48/790 (6%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263
           +  +    P+YA + AR  +  L        +K+ +K     ++ LY      Y+  + G
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIEDLY-----HYVNPKNG 107

Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A ++ E   +  + +   L + + Y+RDF ++Y G + L   Y L  NG   E PQ  
Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D 
Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+
Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  
Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF P+E   L D+YG+EFE  YE YE++  RG       I A  LW  +L    ETG+
Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616
           P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++
Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ S
Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +        
Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +
Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTI 689

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910
           ++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +
Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749

Query: 911 VEKSTLKGVD 920
           V++  LK VD
Sbjct: 750 VDQEQLKVVD 759


>gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large
          Length = 811

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/762 (37%), Positives = 435/762 (57%), Gaps = 37/762 (4%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  VSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            +  L ++   V +TV ++     + +     P    +  +  +K    H+  +D  ++Y
Sbjct: 82  AVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMK----HKDELDSAIIY 137

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
                  +RDF + + G + L   Y L I+G   E PQ   MRVA+G+  ++ E    A+
Sbjct: 138 -------DRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGEDIEA---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L+  AM++K +G 
Sbjct: 188 ETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAMISKTAGV 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           L  +   +R  G++I GTNG S G++P ++V N+TA  V+QGG KR GA  AYLE WH D
Sbjct: 248 LVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +FL+LRK  G++  R   M  A WIPDLFM+RV +N  WT F P+E   L D++G EF
Sbjct: 308 VMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLADVWGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              YE YE++ +RG     R + A  +W  +L    ETG+P++ +KD CN +S Q++VG 
Sbjct: 368 VALYEKYEKE-NRGR----RSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + SSNLCTEI   SS +E AVCNL S+ L     + ++++ KL   ++   R L+ +ID+
Sbjct: 423 IRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVVTRNLNKIIDV 482

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +A++SN  HR +GLG+ G   A   L +P+ S  A ++  +  E I   A+ AS
Sbjct: 483 NYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEAS 542

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            E+AQ  G Y S++GS   QG+   D   +          N T    W E K+++   G+
Sbjct: 543 CEIAQVEGTYESYEGSPCIQGILQYDMWNV----------NPTDLWDWAEFKEKIAKHGI 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L +RDLW+E
Sbjct: 593 RNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNE 652

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M + L   DGSI  I  IP DLK ++ T +EI    +I+ A+ R  +IDQ+QSLN++L 
Sbjct: 653 DMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLK 712

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 713 DPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754


>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|12644286|sp|P48591|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster]
 gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster]
 gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]
          Length = 812

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 297/819 (36%), Positives = 452/819 (55%), Gaps = 51/819 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               +  L    P+YA + AR  +  L +E       V   +Y    K T+ ++  L  E
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVP-LVSE 129

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +              H +++  +   L + + Y+RDF + Y G + L   Y L  NG   
Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIA 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL 
Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+
Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKR
Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   LHD++G EFE  YE YE++      +  R + A +LW  ++  
Sbjct: 353 VEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWFAIIEA 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L     
Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             + +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+ 
Sbjct: 468 PEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D       
Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++    T+   W +LK+ ++  G+RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 581 MWDKVP---TNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI
Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEI 697

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
                I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +
Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             + T   V+ K  AV +   N +    G P     D E
Sbjct: 758 AIQFT---VNKKQGAVSMNGQNGTAE--GSPQKYEEDRE 791


>gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus G186AR]
          Length = 881

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81

Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++       V+  +Y     K Q+      Q  Y E   R+ +E   A      
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                       + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV QN+ WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG EFE  YE YE++  RG+    + + A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQVV 474

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E
Sbjct: 475 VRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFE 534

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I    ++AS ELA+  G YS+++GS   QG+   D   +            T    WD 
Sbjct: 535 TIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ 
Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +ID
Sbjct: 645 DLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922
           Q+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  
Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764

Query: 923 LNAV 926
           +  V
Sbjct: 765 VARV 768


>gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori India7]
          Length = 788

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 315/832 (37%), Positives = 450/832 (54%), Gaps = 115/832 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDP---CN-------IRS------------PQQHVGVVHSSNLCTE-------ITLNSS 593
           FKD    CN       IRS            P  +   +  ++   E       +T +S+
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 594 ---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
                                        +TAVCNL SINL     N + D  ++   + 
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSK--INTEEDIKRVVPIM- 520

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             VR+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  
Sbjct: 521 --VRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDAL 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           ME IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W
Sbjct: 579 MEQISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDW 637

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L
Sbjct: 638 QGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL 697

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  + W+                           + +A++ID   LI++A+ RQKW
Sbjct: 698 -----NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKW 726

Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           IDQ QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 727 IDQGQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
          Length = 792

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/765 (36%), Positives = 435/765 (56%), Gaps = 48/765 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T     + TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            +  L +E   V + V +      +   +C  P       +E +   L ++  ++  +++
Sbjct: 82  AVSNLHKETKKVFSDVVEDLYNYVNPLNRCHSP----MVAKETLDIVLENKDRLNSAIIF 137

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
                  +RDF++ + G + L   Y L ING   E PQ   MRVA+G+   + +     +
Sbjct: 138 -------DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHQTDIDA---VI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG
Sbjct: 188 ETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEPWHFD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +FLDL+KNTG + +R  D+    WIPDLFMKRV  N  W+L  P +   L + +G+EF
Sbjct: 308 VFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMCPSDCPGLDECWGEEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++      +V R + A  +W  ++    ETG P++ +KD CN +S QQ++G 
Sbjct: 368 EKLYTRYEQEG-----RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637
           + SSNLCTEI   +S +E AVCNL SI L  +    + FD+ KLA   +  VR L+ +I+
Sbjct: 423 IKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFSKLAYVTKVIVRNLNKIIE 482

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA ++  +  E I + A+ +
Sbjct: 483 INYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQKLNTQIFETIYYAALES 542

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-----WDELKKR 752
           S ELA E GAY ++ GS   +G+               L  N   + P     W  LK+ 
Sbjct: 543 SCELAAELGAYETYPGSPVSKGI---------------LQYNMWDKTPTDLWDWTLLKEN 587

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +
Sbjct: 588 IAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTE 647

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LW+E M + L   +GSI  I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 648 RGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQS 707

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 708 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 752


>gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
 gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
          Length = 785

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 299/822 (36%), Positives = 442/822 (53%), Gaps = 120/822 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G++   +  +++     A  GL   S   +  +     YDG++   ++  LI ++
Sbjct: 6   VIKRNGSMEELDITKIQKHTSSAVEGLSGTSQSELEVDAKLQFYDGITTERIQDTLIKTA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I+   PN+  V AR  L  L        Y +  + T +        +   Y E G +
Sbjct: 66  VDKIDVASPNWTFVAARLFLYDL--------YHRVSRFTGYR-------HLREYFEVGER 110

Query: 266 -ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
             +LL      FDL  L + +  +RD  F YLG++ LYDRY L   NG  IE+PQ  FM 
Sbjct: 111 EGKLLKGLKEKFDLDLLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMA 170

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA  E +  + A++FY+ LS+F  MC+TPTL N+ T   QLSSC++ + PD++ GI
Sbjct: 171 IAMFLAQNEKDCNEWAIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGI 230

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F + +E A+L+KY GG+G D++ VR +G+ I G    + G+IPFLK+ ND A+AV+Q G 
Sbjct: 231 FDSYKEMALLSKYGGGIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGT 290

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGA+  Y+E WH DV EF++LRKN+G++RRRTHD+  A WI DLFM+RV Q++ W+ F 
Sbjct: 291 RKGAIATYIEIWHNDVTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFD 350

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P    +L +LYG EF+  YE  E+  +     V   + A  LW+K+L   FETG P++ F
Sbjct: 351 PYTCRELTNLYGDEFKKRYEELEKMPNM----VVSSMPAKDLWKKILNSYFETGLPFLCF 406

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEET------ 597
           KD  N  +P  H G++ SSNLCTEI  N+                     SEE       
Sbjct: 407 KDSANRANPNAHSGIIRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGV 466

Query: 598 ------------------------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627
                                         AVCNL SINL     +    ++ +   +  
Sbjct: 467 TKRANKLTSIDSLKGKKIFNTQRVQTGGQTAVCNLASINL-----SKIHTHEDIERIVPI 521

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVID+N +   K K +N  +RAIGLG+MG    L    + + S     + D  M
Sbjct: 522 AVRMLDNVIDLNFYPSRKVKVTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIM 581

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E IS++AI AS  LA+ERGAY +++GS W +G+FPID     A  + +  + R     W+
Sbjct: 582 EAISYNAIKASAMLAKERGAYPTYEGSNWSKGIFPIDK----ANEKAKAIVERIFHYDWE 637

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  VK+ G+RN   MAIAPT++I+ + G +Q+I+P Y+ ++ + N+SG   ++ S + 
Sbjct: 638 SLRDLVKSEGIRNGYLMAIAPTSSISILVGTTQTIEPIYKQIWHEENLSG---MIKSVVP 694

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N                         +E I       + +A+ I+   L+ +A+ RQKWI
Sbjct: 695 NL-----------------------TLETI-----NFYPSAYSINQHDLVRAAAVRQKWI 726

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           DQ QSLN++  LD  SGK+L  IY  AW +GLK+TYYLRS+S
Sbjct: 727 DQGQSLNIFIRLDSVSGKQLHEIYMLAWSLGLKSTYYLRSQS 768


>gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 865

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/765 (37%), Positives = 437/765 (57%), Gaps = 45/765 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +  +    +Y G++  +L+      + T+    P+YA + AR 
Sbjct: 22  VQRLCYGLDPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTVHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T  Y K         Q LY EY     + G+ + ++ +   D  + +   
Sbjct: 82  AVSNLHKQT-TKQYSKVS-------QALY-EYVNP--KTGLHSPMISKETYDIIMEHEDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + +   Y L ING   E PQ   MRVA+G+  K+     R +
Sbjct: 131 LNSAIVYDRDFNYNYFGFKTMERSYLLRINGKVAERPQHLIMRVAIGIHGKDI---PRVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F   +P LFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQRYFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+YG EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLSDVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++ +RG     + I A  LW  +L+   ETG P++ +KD CN ++ Q+++GV
Sbjct: 368 EELYTRYEKE-NRGR----QTIKAQKLWYAILSAQTETGTPFMLYKDACNTKTNQKNLGV 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   S+ +E AVCNL SI L +      +N  ++++KL    +   R L+ 
Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWYNFEKLHEVTKVVTRNLNR 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + + +A++SN  HR I LG+ G   A   L +P+ S EA E+  +  E I   A
Sbjct: 483 VIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDSQEARELNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752
           + +S+ELA E G Y S+ GS   QG+   D              NR  T    WD LK++
Sbjct: 543 VESSIELAAEEGVYESYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 591 MAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +W++AM S++  ++GSI  +  IPD++K ++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 651 LGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus]
 gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus]
          Length = 771

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + E    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIES--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L D++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTQYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK ++++ 
Sbjct: 541 ASCELAEKEGPYETYTGSYASNGILQYD---LWNVVPSDL-------WDWESLKDKIRSY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +E + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|332519181|ref|ZP_08395648.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
 gi|332045029|gb|EGI81222.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
          Length = 827

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/775 (36%), Positives = 441/775 (56%), Gaps = 44/775 (5%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V + C GL ++   I V       +YDG++ S+L+      + T+    P+YA++ AR  
Sbjct: 22  VRKLCYGLNELVDPIKVAMRVIDGLYDGVTTSELDNLAAEQAATMTTAHPDYARLAARIS 81

Query: 225 LEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           +  L +       +V+T +Y+     T  +   L  E +   +E   K            
Sbjct: 82  VSNLHKNTKKTFSDVMTDLYQYVNPRTGKKAPLLSDEVYNVIMENKEK------------ 129

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
              L + + Y RDF ++Y G + L   Y L ING   E PQ   MRV++G+ + + +   
Sbjct: 130 ---LDSAIIYNRDFGYDYFGFKTLERSYLLKINGEIAERPQHMLMRVSIGIHINDLDA-- 184

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
            A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + GI+  L++ A +++ 
Sbjct: 185 -ALETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDGIYDTLKQTAKISQS 243

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QGG KRKG+   Y+E W
Sbjct: 244 AGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGSFAMYIEPW 303

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+  FLDL+KN G +  R  D+  A W+PDLFMKRV ++A WTL  P+E   L D++ 
Sbjct: 304 HADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTLMCPNECPGLCDVHS 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  Y  YE      E K  + I A  LW K+L    ETG P++ +KD  N +S Q++
Sbjct: 364 EEFEALYTKYE-----AEGKGRKSIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L    +   + L+ V
Sbjct: 419 LGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGEFDHKELFRITKRVTKNLNKV 478

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + +++A+ SN  HR +GLG+ G   A   L +P+ S  A ++  +  E + + A+
Sbjct: 479 IDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDAAKQLNQDIFETLYYAAV 538

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS+E AQ  G Y +++GS   +G F  +    L  ++++     + R  W++L+K+V  
Sbjct: 539 TASMEEAQVDGPYQTYEGSPMSKGEFQHN----LWNIQED---TLSGRWDWEKLRKQVAK 591

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    L
Sbjct: 592 HGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDLGL 651

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E + +++   +GSI ++E IP D+K ++ T +E+    +I+ + +R  +IDQ+QSLNL
Sbjct: 652 WNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIIDMSRQRGYFIDQSQSLNL 711

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           +++  +  KL  ++  AW  GLKT  YYLR++SA   +K T   +     A PVT
Sbjct: 712 FMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVT---ISRATKAAPVT 763


>gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
 gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
          Length = 870

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 287/790 (36%), Positives = 441/790 (55%), Gaps = 48/790 (6%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263
           +  +    P+YA + AR  +  L        +K+ +K     +  LY      Y+  + G
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNG 107

Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A ++ E   +  + +   L + + Y+RDF ++Y G + L   Y L  NG   E PQ  
Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D 
Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+
Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  
Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF P+E   L D+YG+EFE  YE YE++  RG       I A  LW  +L    ETG+
Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGN 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616
           P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++
Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ S
Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +        
Sbjct: 520 PEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP------ 573

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 574 ----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +
Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTI 689

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910
           ++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +
Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749

Query: 911 VEKSTLKGVD 920
           V++  LK VD
Sbjct: 750 VDQEQLKVVD 759


>gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 883

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/767 (37%), Positives = 429/767 (55%), Gaps = 47/767 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL    +    V       +Y+G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTYELDNLAAETAAYMTTVHPDYAVLAARL 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T V+ K     HH +            E    A L+ + + D  +     
Sbjct: 82  AVSNLHKQT-TKVFSKVIDELHHYVNP----------ENNKPAPLISKDVYDTVMANKDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L + G   E PQ   MRVA+G+   +    K A+
Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRMKGKVAERPQHMVMRVAIGIHGNDI---KAAI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + DD + GI+  L+E AM++K +GG
Sbjct: 188 ESYNLMSQRYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA+  YLE WH D
Sbjct: 248 IGLHIHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAMALYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV +NA WTLFSP E   L ++YG+EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWTLFSPSEAPGLDEVYGEEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  Y  +  RG+    + I A  LW  +L    ETG P++ +KD CN++S Q+++G 
Sbjct: 368 EALYNRYVEEG-RGK----KTIKAQKLWYSILEAQTETGTPFMLYKDACNLKSNQRNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVL 632
           + SSNLC EI   S+ +ETAVCNL SI L A    ++      +++ KL    +   R L
Sbjct: 423 IKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDEKQSFYNFKKLHDIAKVVTRNL 482

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID N + +++AK SN  HR I LG+ G   A  LL IP+ S EA E+     E +  
Sbjct: 483 NRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLRIPFESKEAKELNIHIFETLYH 542

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELK 750
            A+ AS ELAQE GAY +FKGS   +G+   D              NR  T    WD LK
Sbjct: 543 GALEASCELAQEEGAYQTFKGSPASEGILQFD------------MWNRKPTDLWDWDTLK 590

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L
Sbjct: 591 SNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDL 650

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               +W+E+M   L   +GSI N+  +P +LK ++ T +EI    +I+ ++ R  +IDQ+
Sbjct: 651 VDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEISQKTIIDMSADRSAFIDQS 710

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            S+N+++  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 HSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757


>gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 859

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/774 (36%), Positives = 433/774 (55%), Gaps = 52/774 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y       ++    +  E +        +  + H   ++ 
Sbjct: 82  AVSNLHKQTKKQFSLVISDLYHYVNPKNNNPAPMISKETY--------EIVMKHADELNS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF + Y G + L   Y L I+G   E PQ   MRVA+G+   + EK 
Sbjct: 134 AIVY-------DRDFNYNYFGFKTLERSYLLRISGKVAERPQHLLMRVAVGIHGNDIEK- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K
Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+Y
Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+  YE YE++  RG       I A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GDEFDALYERYEKEG-RGR----STIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L      A  ++D+ KL   ++  VR L
Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ SPEA ++  +  E I  
Sbjct: 479 NKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSPEARQLNTQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++AS ELA++ G Y +++GS   QG+   D                T    WD LK +
Sbjct: 539 GALTASCELAKQLGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKAK 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 589 IAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 LGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           LN++L EP+  KL  ++   W MGLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 709 LNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           equinum CBS 127.97]
          Length = 875

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/772 (36%), Positives = 435/772 (56%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L        +K+ +K     +  LY      Y+  + G  A ++ E   +  + + 
Sbjct: 82  AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNGRPAPMISEKTREIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+  ++ EK   
Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGIHGEDVEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
            +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG+
Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG       I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   ++ +E AVCNL SI L         ++D+ KL    +  VR L+ 
Sbjct: 421 GTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVRNLNR 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  +  E +   A
Sbjct: 481 IIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ELA+  G YSS++GS   QG+   D   +            T    WD LK  + 
Sbjct: 541 LTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLWDWDGLKAEIS 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 KHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK VD
Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVVD 762


>gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
 gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus
           oryzae RIB40]
 gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 854

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 296/806 (36%), Positives = 450/806 (55%), Gaps = 55/806 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      YI    K      S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSLVISDLY-----HYINPKNKKPAPMISKETYEIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L I+G   E PQ   MRV++G+   + EK   
Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLMRVSVGIHGNDIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+YG 
Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   ++ +E AVCNL S+ L      A  ++D+ KL   ++  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + + +AK SN  HR I LG+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 481 IIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS +LA++ G Y S++GS   QG+   D       + D      T    WD LK ++ 
Sbjct: 541 LTASSDLAKDFGTYESYEGSPVSQGILQYD-------MWDRTP---TDLWDWDALKAKIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD---GKLNA 925
           ++L EP+  K+  ++   W MGLKT  YYLR+ +A+     +V++  LK  D    + NA
Sbjct: 711 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANA 770

Query: 926 V---PVTDPNSSTHSLGIPSSCTSDT 948
                     S+T+S  +P S TS+T
Sbjct: 771 SFRKRAVGAASNTYS-AVPRSPTSET 795


>gi|297268644|ref|XP_002799731.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 695

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/661 (40%), Positives = 404/661 (61%), Gaps = 25/661 (3%)

Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 13  GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD
Sbjct: 73  MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG
Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +
Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK+ +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 479 ----TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654

Query: 916 L 916
           L
Sbjct: 655 L 655


>gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae]
          Length = 794

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/803 (36%), Positives = 444/803 (55%), Gaps = 45/803 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      YI    K      S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSLVISDLY-----HYINPKNKKPAPMISKETYEIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L I+G   E PQ   MRV++G+   + EK   
Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLMRVSVGIHGNDIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+YG 
Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   ++ +E AVCNL S+ L      A  ++D+ KL   ++  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + + +AK SN  HR I LG+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 481 IIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS +LA++ G Y S++GS   QG+   D                T    WD LK ++ 
Sbjct: 541 LTASSDLAKDFGTYESYEGSPVSQGILQYDM----------WDRTPTDLWDWDALKAKIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+     K+    V   N+
Sbjct: 711 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANA 770

Query: 934 STHSLGIPSSCTSDTE--CEVCQ 954
           S         C+ + +  C +CQ
Sbjct: 771 SFRKRAKVLQCSIENKEACLMCQ 793


>gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative;
           ribonucleotide reductase large subunit 1, putative;
           ribonucleotide reductase r1 subunit 1, putative [Candida
           dubliniensis CD36]
 gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative
           [Candida dubliniensis CD36]
          Length = 854

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 286/765 (37%), Positives = 435/765 (56%), Gaps = 45/765 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +  +    +Y G++  +L+      + T+    P+YA + AR 
Sbjct: 22  VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T  Y K  K  +        EY     + G+ + ++ +   D  + +   
Sbjct: 82  AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+   +     R +
Sbjct: 131 LNSAIVYDRDFSYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+YG EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++ +RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++G+
Sbjct: 368 EELYTRYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   S+ +E AVCNL SI L +   ++Q    +++DKL    +   R L+ 
Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWYNFDKLHDVTKVVTRNLNR 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + + +A++SN  HR I LG+ G   A   L +P+ S EA E+  +  E I   A
Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752
           + ASVELA+E GAY ++ GS   QG+   D              NR  T    WD LK+ 
Sbjct: 543 VEASVELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQN 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta]
 gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]
          Length = 812

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 292/794 (36%), Positives = 444/794 (55%), Gaps = 49/794 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               +  L    P+YA + AR  +  L +E       V   +Y    K T+ ++  L  E
Sbjct: 71  AAEIAAGLTCYHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVS-LVSE 129

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +              H +++  +   L + + Y+RDF + Y G + L   Y L  NG   
Sbjct: 130 F--------------HYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIA 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL 
Sbjct: 176 ERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLL 232

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+
Sbjct: 233 TMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNN 292

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKR
Sbjct: 293 VARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   L D++G EFE  YE YE++      +  R + A +LW  ++  
Sbjct: 353 VEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQEG-----RANRTVKAQSLWYAIIEA 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L     
Sbjct: 408 QVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT 467

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             + +D+ KL    +   R L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+ 
Sbjct: 468 PEKTYDFKKLKEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D       
Sbjct: 528 FPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYD------- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++    T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 581 MWDKVP---TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYT 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI
Sbjct: 638 RRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEI 697

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
                I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +
Sbjct: 698 SVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAAN 757

Query: 911 VEKSTL---KGVDG 921
             + T+   KG +G
Sbjct: 758 AIQFTVNKKKGAEG 771


>gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 790

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 299/831 (35%), Positives = 459/831 (55%), Gaps = 69/831 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   S    ++   +E+ C+GL        D++ K++       +YD ++  +L+
Sbjct: 3   VVKRDGRYESVKFDKITARIEKLCTGLNTDYINPVDIAMKVI-----AGIYDKVTTVELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                 + ++  K P+Y  + AR          ++ ++K   ++  + M+ LY      Y
Sbjct: 58  NLAAEIAASMATKHPDYTVLAARI--------AVSNLHKVTSESFSNTMKWLYT-----Y 104

Query: 260 IEE--GVKARLL----------HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           I+   G  A L+          H +++D  +VY       +RD+ ++Y G + L   Y L
Sbjct: 105 IDPKTGENASLIASDVYKVIREHAALLDKTIVY-------KRDYDYDYFGFKTLERSYLL 157

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING  +E PQ   MRVA+G+  ++ E    A++ Y+LLS   F  +TPTLFN+GT  PQ
Sbjct: 158 KINGKIVERPQHMLMRVAVGIHKEDIEA---AIQTYHLLSERWFTHATPTLFNAGTPKPQ 214

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL T+ +D + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P
Sbjct: 215 LSSCFLLTMKEDSIEGIYDTLKQCAQISQSAGGIGLSIHNIRATGSYIKGTNGISNGIVP 274

Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+  + TA  V+QGG +RKG+   YLE WH D+ EFLDLRKN G +  R  D+  A WI
Sbjct: 275 MLRNFDMTARYVDQGGGRRKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWI 334

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFM+RV  N  W+LF P+E   L D YG+EFE  Y+ YER+      K  + + A  L
Sbjct: 335 PDLFMQRVENNEEWSLFCPNESPGLADCYGEEFERLYKKYEREG-----KARKSVKAQEL 389

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  +L    ETG P++ +KD  N +S QQ++G + SSNLCTEI   +S EE AVCNL SI
Sbjct: 390 WFAILEAQIETGMPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASI 449

Query: 606 NLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
             L  F N   +FD+ KL        + L+ +IDIN + + +A+ SN  HR IG+G+ G 
Sbjct: 450 -ALPKFINQAGKFDHQKLYEITYVITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGL 508

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
                 L +P+ SPEA  +  +  E I F A++AS +LA++ G Y +FKGS   +G+F  
Sbjct: 509 ADTFLRLRMPFDSPEARGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQF 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D  G+            + R  W+ L+K V+  G+RNS  +A  PTA+ + I G ++  +
Sbjct: 569 DMWGVEPS---------SGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFE 619

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y +  +SG+F VVN  L+ +L    LWDE M ++L   +GS+  I+RIP  +K+
Sbjct: 620 PYTSNIYTRRVLSGEFIVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKE 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           +H T +EI    +I+ A+ R  +I Q+QS+N++L + +  KL  ++  AW  GLKT  YY
Sbjct: 680 LHRTVWEIPQKAIIDMAADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYY 739

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LR+R A    K TL+  +  LN +PV         + +        +C VC
Sbjct: 740 LRTRPAADAIKFTLQK-EQALNDIPVPQ-KKVEQQVSMVCDAEDSEDCLVC 788


>gi|289621907|emb|CBI61238.1| putative heterokaryon incompatibility protein [Sordaria macrospora]
          Length = 937

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/779 (36%), Positives = 434/779 (55%), Gaps = 56/779 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V+  +Y    P+   H  M            ++  +  + H+   
Sbjct: 82  AVSNLHKQTKKQWSLVINELYNYVNPKTGKHSPM----------IAKDTYECVMRHKDEF 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E
Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E YNL+S   F  ++PTLFN+GT   QLSSCFL  + +D + GI+  L+  AM+
Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKR+ QN  WTL  P E   L D
Sbjct: 302 EPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWTLMCPHECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE YE++      K  + + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  +D+ KL    +  VR
Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENASYDFKKLHEVTQVVVR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +ID+N + + +A  SN  HR IG+G+ G   A   L +P+ SPEA ++  +  E I
Sbjct: 477 NLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSPEARKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++AS +LA+E+G YS+++GS   QG+   D   +            ++   W  LK
Sbjct: 537 YHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTP----------SNLWDWAALK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 ADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923
           QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A      +V++  LK  D ++
Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALKATDDQV 765


>gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 859

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 288/772 (37%), Positives = 432/772 (55%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      Y+    K      S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSLVISDLY-----HYVNPKNKQPAPMISKETYEIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L ING   E PQ   MRVA+G+     EK   
Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNNIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K +
Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+YG 
Sbjct: 306 ADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFDALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   S+ +E AVCNL S+ L      A  ++D+ KL   ++  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + + +AKKSN  HR I LG+ G   A   L +P+ S EA ++  +  E I   A
Sbjct: 481 IIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ELA+E G Y +++GS   QG+   D                T    WD LK ++ 
Sbjct: 541 LTASCELAKEFGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKTKIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  KL  ++   W MGLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 711 IHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis]
 gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis]
          Length = 818

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 301/813 (37%), Positives = 448/813 (55%), Gaps = 55/813 (6%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDG 192
           SKS  P   KL ++  DG     +  ++   V++ C  L  D    + ++ +    +Y G
Sbjct: 4   SKSLKP--EKLYVIKRDGRKEEIHFDKITSRVQKLCYNLNMDFVDPVSITLKVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATH 245
           ++  +L+      + +L     +YA + AR  +  L +E       V   +YK   + T+
Sbjct: 62  VTTQELDNLAAEIAASLTTHHADYALLAARIAVSNLHKETRKVFSDVFEDLYKHVNRETN 121

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            E   +  EY              H +++  +   L + + Y+RDF + Y G + L   Y
Sbjct: 122 -ETSPMVSEY--------------HYNIVANNSDRLNSAIIYDRDFGYNYFGFKTLERSY 166

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L ING   E PQ   MRVA+G+   + +    A+E YNLLS  +F  ++PTLF + T  
Sbjct: 167 LLKINGKIAERPQHMLMRVAIGIHGDDIDS---AIETYNLLSERYFTHASPTLFAAATNR 223

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQLSSCFL T+  D + GIF  +++ AM++K +GG+G +   +R  G  I GTNG S G+
Sbjct: 224 PQLSSCFLLTMASDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSISGTNGTSNGL 283

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A 
Sbjct: 284 VPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYAL 343

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV  N  W+L  P +   L D++G+EFE  Y  YE++  +  I     + A 
Sbjct: 344 WIPDLFMKRVEANEDWSLMCPHKCPGLQDVWGEEFEKLYVKYEKEGRQNRI-----VKAQ 398

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +LW  ++    ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL 
Sbjct: 399 SLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLA 458

Query: 604 SINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L +   A   +D+ KL    +   + L+ +IDIN + + +AKKSN  HR IG+G+ G
Sbjct: 459 SIALNMFVTAEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQG 518

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F  AL L+  PY S EA  +  +  E I + A+ AS EL+++ G Y ++ GS   +GV  
Sbjct: 519 FADALILMRFPYESEEASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQ 578

Query: 723 IDSIGLLAEVRDELAMNR--TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            D              NR  T    WD LK+ +K  G+RNS  +A  PTA+ A I G ++
Sbjct: 579 YD------------MWNRSPTDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNE 626

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP++
Sbjct: 627 SFEPYTSNIYTRRVLSGEFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEE 686

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           ++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT 
Sbjct: 687 IRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTG 746

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            YYLR++ A +  + T   VD  ++ V +   N
Sbjct: 747 MYYLRTKPAANAIQFT---VDKNVSVVEINAQN 776


>gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 438/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+++G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKKGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
 gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
          Length = 1117

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/767 (37%), Positives = 431/767 (56%), Gaps = 51/767 (6%)

Query: 166 VEEACSGL-QDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL Q+    I +  +  + +Y+G++  +L+     ++       P+YA + AR 
Sbjct: 254 ISKLCYGLDQNYVDPIEITRKVIEGIYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARI 313

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L +E       V+  +Y+   P+   H  M            +   K  + H+  +
Sbjct: 314 AISNLHKETSKNFSQVVQALYEYVNPKNGRHSPMIS----------DATYKVVMEHKDQL 363

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  ++Y       ERDF + + G + L   Y L ING   E PQ   MRVA+G+  ++ E
Sbjct: 364 DSAIIY-------ERDFHYNFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGQDIE 416

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
               A+E YNL+S  +F  ++PTLFN+GT HPQLSSCFL T+ DD + GI+  L+  AM+
Sbjct: 417 S---AIETYNLMSQKYFTHASPTLFNAGTPHPQLSSCFLVTMKDDSIDGIYDTLKTCAMI 473

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   Y+
Sbjct: 474 SKTAGGIGLNIHCIRGTGSYIAGTNGVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYI 533

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  ++  A W+PDLFMKRV QN  W+L  P+E   L D
Sbjct: 534 EPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMCPNECPGLAD 593

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG EFE  YE YE      E +  R + A  LW  +L    ETG+P+I +KD  N +S 
Sbjct: 594 CYGDEFERLYERYE-----AEGRSKRTVKAQKLWYAILESQTETGNPFILYKDAANRKSN 648

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVR 630
           Q+++G +  SNLCTEI   S+ +E AVCNL SI L          +D+ +L S  +   +
Sbjct: 649 QKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYDFKRLHSVAKAICK 708

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + +E+A+KSN  HR IG+G+ G   A  ++   + S EA  +  +  E I
Sbjct: 709 NLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFESAEARRLNVQIFETI 768

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+  S ELA++ G+Y ++ GS   QG    D  G+            +    W ELK
Sbjct: 769 YHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTP----------SDLWDWAELK 818

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ EL
Sbjct: 819 AKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLREL 878

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            ++ LW++ M + +  H GSI N+  IPD +KK++ T +EI    +I+ A+ R  +I Q+
Sbjct: 879 VEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAIIDMAADRGAFICQS 938

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           QSLN++L  P+  +L  ++   W  GLKT TYYLR++ A++  + TL
Sbjct: 939 QSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTL 985


>gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           knowlesi strain H]
 gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 848

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/736 (37%), Positives = 418/736 (56%), Gaps = 37/736 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+   +L+     +   +    P+++ + AR   + L +     +      A   E 
Sbjct: 87  MYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDI------AEVAEA 140

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRY 305
             +Y +        G  A L+ + + DF + +   L  ++ Y RDF ++Y G + L   Y
Sbjct: 141 LYMYKDV------RGRPASLISKEVYDFMIQHKDRLNKEIDYTRDFNYDYFGFKTLERSY 194

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L ING  IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  
Sbjct: 195 LLRINGKIIERPQHLLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTPR 251

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL  +  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G+
Sbjct: 252 PQMSSCFLLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGL 311

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A 
Sbjct: 312 VPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAV 371

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P+E   L + +G EFE  Y  YE +   G+    + + A 
Sbjct: 372 WVPDLFMKRVKENQNWTLMCPNECPGLSESWGAEFEKLYLKYEEEG-MGK----KTVLAQ 426

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL 
Sbjct: 427 DLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLA 486

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L         +F++ KL    +   R LD +I+ N + +++A++SN  HR IG+G+ 
Sbjct: 487 SIALCKFVDVDKREFNFKKLYEITKIITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQ 546

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL  PY S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+ 
Sbjct: 547 GLADTFMLLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPASQGIL 606

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +  +              WD+LK+++K  G+RNS  +A  PTA+ + I G ++S
Sbjct: 607 QFDMWNVKVD---------NKYWDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNES 657

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP+DL
Sbjct: 658 FEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDL 717

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  
Sbjct: 718 KELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGA 777

Query: 901 YYLRSRSATSVEKSTL 916
           YYLR+++AT   K T+
Sbjct: 778 YYLRTQAATDAIKFTV 793


>gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like,
           partial [Saccoglossus kowalevskii]
          Length = 759

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 292/739 (39%), Positives = 431/739 (58%), Gaps = 34/739 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+T    ++ ++  K P+YA + AR  +  L +E         +K     M
Sbjct: 11  VYPGVTTVELDTLAAETAASMTTKHPDYAVLAARIAVSNLHKET--------KKTFSAVM 62

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             L+     R  +           ++  +   L + + Y+RDF + + G + L   Y L 
Sbjct: 63  DDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGFKTLERSYLLK 122

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           ING   E PQ   MRV++G+   + E    A+E YNLLS   F  ++PTLFN+GT  PQL
Sbjct: 123 INGKVAERPQHMLMRVSVGIHHNDIEG---AIETYNLLSEKWFTHASPTLFNAGTCRPQL 179

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL T+ DD + GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P 
Sbjct: 180 SSCFLLTMKDDSIEGIYDTLKQCALISKSAGGIGVNVHCIRASGSYIAGTNGSSNGLLPM 239

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L+V N+TA  V+QGG KR GA   YLE WH D+ +FLD +KNTG + +R  D+  A WIP
Sbjct: 240 LRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRARDLFYALWIP 299

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  N  WTL  P+E   LHD++GKEFE  YE YER     E K  + I A  LW
Sbjct: 300 DLFMKRVETNQDWTLMCPNECPGLHDVWGKEFEDLYEKYER-----ENKGTKTIKAQLLW 354

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI- 605
             ++    ETG P++ +KD CN +S  Q++G +  SNLCTEI   SS +E AVCNL SI 
Sbjct: 355 YAIIEAQTETGTPYMLYKDACNRKSNHQNLGTIKCSNLCTEIVEFSSPDEVAVCNLASIA 414

Query: 606 -NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            N+     +  +D+ KL       VR L+ +ID+N + +E+A+ SN  HR IG+G+ G  
Sbjct: 415 VNMFVK-PDKTYDFKKLEQVTGVIVRNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 473

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA+ +  +  E I + A+ AS ELA+  GAY S+K   +  G  P+ 
Sbjct: 474 DAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYK---FGDGC-PV- 528

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           S G+L    D   +  T    WD LKK + T G+RNS  +A  PTA+ A I G ++S++P
Sbjct: 529 SKGILQ--YDMWDVTPTDLHDWDALKKDIATHGLRNSLLLAPMPTASTAQILGNNESVEP 586

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F VVN  L+ +L +  LW++ M + L  ++GSI +I+ IPD +KK+
Sbjct: 587 YTTNIYSRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQSIDGIPDHIKKL 646

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYL
Sbjct: 647 YRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFAWKQGLKTGMYYL 706

Query: 904 RSRSAT-----SVEKSTLK 917
           R+R A      +V K++LK
Sbjct: 707 RTRPAADPIKFTVNKTSLK 725


>gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1]
          Length = 784

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 288/743 (38%), Positives = 422/743 (56%), Gaps = 39/743 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G+  + L+     ++ +   + P+YA + AR  +  L        +K+  K+    M
Sbjct: 47  VYSGVHTTQLDQLAAETAASFTTRHPDYAILAARISVSNL--------HKQTNKSFSQTM 98

Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
           + L+ EY     + G  A L+ +   ++++ +   L + + Y+RDF F + G + L   Y
Sbjct: 99  KALH-EYVNP--KTGKLAPLVSDETWAVIEKNKELLDSHVIYDRDFNFNFFGFKTLERSY 155

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L ING  +E PQ  FMRV++G+     +     +E YN +S   F  ++PTLFNSGT  
Sbjct: 156 LLKINGQVVERPQHMFMRVSVGI---HGDNLDAVLETYNHMSQGLFTHASPTLFNSGTPL 212

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            QLSSCFL ++ DD + GI+  L   AM++K +GG+G     VR  G++I GTNG+S G+
Sbjct: 213 AQLSSCFLVSMKDDSIKGIYDTLTTCAMISKTAGGVGLSIHNVRASGSYIAGTNGESNGL 272

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V N+TA  V+QGG KR GA   YLE WH DV EFLDL+KN G D  R  D+  A 
Sbjct: 273 VPMLRVYNNTARYVDQGGNKRPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYAL 332

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFMKRV +N  WTL  P E   L D YG EFE  YE YER+  RG     + I A 
Sbjct: 333 WVPDLFMKRVERNEQWTLMCPHECPGLADCYGAEFEALYERYEREG-RGR----KTIDAQ 387

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   S+ +E AVCNL 
Sbjct: 388 KLWFAILESQTETGTPYMLYKDACNEKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLA 447

Query: 604 SINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           S+  L  F N     +D+++L   ++   R L+ +IDIN + + +AK SN  HR IG+G+
Sbjct: 448 SL-ALPKFVNEDTRTYDFERLHDVVKIVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGV 506

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  L+ +P+ SPEA ++     E I   A+ AS E+AQ  G Y +++GS   QG 
Sbjct: 507 QGLADAFILMRLPFDSPEARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVSQGT 566

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            T +  W  LK ++   G+RNS  +A  PTA+ A I G ++
Sbjct: 567 LQYDMWGITP----------TDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNE 616

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P   N+Y +  +SGDF VVN  L+ +L +  +W   +   +  ++GSI  I  IPDD
Sbjct: 617 SIEPYTSNIYSRRVLSGDFQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDD 676

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           +K ++ T +E+    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT 
Sbjct: 677 IKALYKTVWELSQRTLIDLAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTG 736

Query: 900 TYYLRSRSATSVEKSTLKGVDGK 922
            YYLR+R+A S  K T+     K
Sbjct: 737 MYYLRTRAAASAIKFTIDATKAK 759


>gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1]
          Length = 913

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/651 (41%), Positives = 396/651 (60%), Gaps = 30/651 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L I+G   E PQ   MRVA+G+   + E   R +
Sbjct: 149 LDSAIVYDRDFNYNYFGFRTLSRSYLLQIDGKIAERPQHMIMRVAVGIWGDDIE---RVL 205

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+SS  F  ++PTLFN+GT  PQLSSCFL  + +D + GI+  L+  AM++K +GG
Sbjct: 206 ETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIDGIYDTLKTCAMISKMAGG 265

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 266 IGLNAHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHAD 325

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D YG EF
Sbjct: 326 VFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMCPNECPGLADCYGDEF 385

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YER+      K  + I A  LW  +L    ETG+P++ +KD CN +S Q+++G 
Sbjct: 386 EALYEKYEREG-----KGRKSIKAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGT 440

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTEI    + +E AVCNL S++L    ++ +  +D+ KL    +  VR L+ +I
Sbjct: 441 IRSSNLCTEIIEYCAPDEVAVCNLASLSLPSFINYEDACYDFKKLHEVTQVVVRNLNKII 500

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + +++A+ SN  HR IGLG+ G   A   L +P+ SPEA E+  +  E I   A++
Sbjct: 501 DVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALT 560

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKT 755
            SV+LA+E G YS+FKGS   +G+   D   +           + S L  W+ L++ VKT
Sbjct: 561 TSVQLAKEEGPYSTFKGSPASEGILQFDMWNV-----------KPSDLWDWEPLREDVKT 609

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    L
Sbjct: 610 HGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGL 669

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W +AM + +   +GSI NI  IP ++K ++ T +EI    +++ A+ R  +IDQ+QSLN+
Sbjct: 670 WSDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNI 729

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++ +P+  K+  ++   W +GLKT  YYLR+++A      +V++  LK  D
Sbjct: 730 HMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQENLKIAD 780


>gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina
           98AG31]
          Length = 871

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/768 (36%), Positives = 436/768 (56%), Gaps = 44/768 (5%)

Query: 166 VEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL +V  + +    +    +++G++  +L+     ++  +  + P+YA + AR 
Sbjct: 23  INKLCYGLDNVHVEPIEITKKVINGVFNGVTTVELDNLAAETAAYMTTRHPDYAVLAARI 82

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESM---MDFDL 278
            +  L +E         +K     ++ LY     RY+  + G  + ++ +     +  + 
Sbjct: 83  AISNLHKET--------KKLFSQVIEDLY-----RYVNPKNGRPSPMISDETYEAVQANA 129

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + Y G + L   Y L I+    E PQ   MRVA+G+   + +   R
Sbjct: 130 EALNSAVIYDRDFNYNYFGFKTLERSYLLRIDNKVAERPQHMLMRVAVGIHGTDVD---R 186

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYS 397
           A+  YNL+S  +F  ++PTLFNSGT HPQLSSCFL ++  D + GI+  L+  AM++K +
Sbjct: 187 AIRTYNLMSEKYFTHASPTLFNSGTPHPQLSSCFLVSMKSDSIDGIYDTLKTCAMISKTA 246

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   Y+E WH
Sbjct: 247 GGIGLNIHDIRATGSYIAGTNGYSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWH 306

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV ++LDLRKN G +  R  D+  A WIPDLFM+RV  N  W LF P E   L D+YG+
Sbjct: 307 ADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLFCPAEAPGLSDVYGE 366

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            FE  ++ YE++      +  + + A  LW  +L    ETG+P++ +KD  N +S Q+++
Sbjct: 367 AFEKLFDQYEKEG-----RAKKTVKAQKLWYAILEAQTETGNPFMLYKDAANRKSNQKNL 421

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G + SSNLCTEI   S+ +E AVCNL SI L  +  +  +D+ KL    +     L+ +I
Sbjct: 422 GTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYITDGVYDFQKLHEVTKEVTWNLNRII 481

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA ++  +  E +   A+ 
Sbjct: 482 DVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEAKKLNAQIFETLYHAALE 541

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA   GAY +F GS    G    D  G+            +    WD+LK+R+K  
Sbjct: 542 ASNELAVAEGAYETFPGSPASLGELQYDMWGVTP----------SDLWKWDDLKERIKAT 591

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ EL +  LW
Sbjct: 592 GLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ M + +  H GSI NI  IP  +K ++ T +EI    +I+ A+ R  +IDQ+QSLN++
Sbjct: 652 NDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDLAADRGAFIDQSQSLNIH 711

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T   VD KL
Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFT---VDKKL 756


>gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
 gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
          Length = 747

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/739 (37%), Positives = 424/739 (57%), Gaps = 45/739 (6%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           ++  S  V  +   ++YDG++  +++T        LI  +P+Y              E+L
Sbjct: 31  ENCDSSKVAQQVASSLYDGITVQEIDTLSAEVCIGLITSDPDY--------------EIL 76

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
            T      + T   +Q + P  F   +++  KA ++ E +       + +D+  +RD+ F
Sbjct: 77  AT------RITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIDTKRDYDF 129

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            Y GL+ L   Y   ++G  +E PQ  FMRVA+G+  ++ +     +E Y+ +S   F+ 
Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVAIGIHGEDIDS---VLETYDKMSQGMFIH 186

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFN+GT  PQ+SSCFL    +D + GI+G L E A ++K++GG+G     VR   +
Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKEDSINGIYGTLTECAQISKWAGGIGMHIHDVRANKS 246

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNG+S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ EFL+LR N GD+
Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMEFLELRLNQGDE 306

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  D+ ++ WIPDLFMKRV +   W+LF PD+   L D  G+EFE  Y  YE +    
Sbjct: 307 EARCRDLFSSLWIPDLFMKRVEEGGQWSLFCPDKAPGLSDAVGEEFEALYTKYEAEGRAN 366

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            I     + A  +W+ +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   +
Sbjct: 367 AI-----VPAADVWKAILKSQTETGTPYMLYKDACNKKSNQKNLGTIKSSNLCTEILEYT 421

Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             +ETAVCNL SI  L  + N +   FDY+KL    +   + L+ VID N + +E A+KS
Sbjct: 422 DKDETAVCNLASI-ALPKYVNEETRTFDYEKLHEITKIVTKNLNRVIDRNFYPVETARKS 480

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IGLG+ G      L    + S EA E+     E +   ++ AS ELA+ +G+Y 
Sbjct: 481 NMRHRPIGLGVQGLADVFILCRYAFDSDEAKEMNARIFETMYHASLEASCELAEAQGSYE 540

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+GS   QGV   D    + E   +L  +      WD LK+R+K  G+RNS  MA  PT
Sbjct: 541 TFEGSPTSQGVLQFD----MWEGETKLNYD------WDVLKERIKEKGLRNSLLMAPMPT 590

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++  +P   N+Y++  ++G+F +VN  LVN+LK+  LW + M   +    G
Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVNDLKKIGLWSKDMKDLMVKAGG 650

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI NI  IPDD+K ++ T +EI    +I+ A++R ++IDQ+QS+NL+++ P+  KL  ++
Sbjct: 651 SIQNISDIPDDIKNLYRTVWEIKMKDVIDMAAQRGRFIDQSQSMNLFMESPTMSKLSSMH 710

Query: 890 RQAWLMGLKT-TYYLRSRS 907
             AW  GLKT  YYLRS++
Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729


>gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A A+W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARAVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +  + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H143]
 gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H88]
          Length = 881

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/784 (36%), Positives = 434/784 (55%), Gaps = 60/784 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81

Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++       V+  +Y     K Q+      Q  Y E   R+ +E   A      
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                       + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N+ WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG EFE  YE YE++  RG+    + + A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQVV 474

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E
Sbjct: 475 VRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQIFE 534

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I    ++AS ELA+  G YS+++GS   QG+   D   +            T    WD 
Sbjct: 535 TIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ 
Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +ID
Sbjct: 645 DLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGK 922
           Q+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  
Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTN 764

Query: 923 LNAV 926
           +  V
Sbjct: 765 VARV 768


>gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus
           Af293]
 gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           fumigatus Af293]
 gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           fumigatus A1163]
          Length = 859

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 287/772 (37%), Positives = 432/772 (55%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      Y+    K      S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSLVISDLY-----HYVNPKNKQPAPMISKETYEIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L ING   E PQ   MRVA+G+     EK   
Sbjct: 129 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNNIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K +
Sbjct: 186 AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+YG 
Sbjct: 306 ADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFDALYERYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   S+ +E AVCNL S+ L      A  ++D+ KL   ++  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + + +AKKSN  HR I LG+ G   A   L +P+ S EA ++  +  E I   A
Sbjct: 481 IIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ELA+E G Y +++GS   QG+   D                T    WD LK ++ 
Sbjct: 541 LTASCELAKEFGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDSLKAKIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 QHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  KL  ++   W MGLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 711 IHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
 gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
          Length = 794

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 303/809 (37%), Positives = 439/809 (54%), Gaps = 113/809 (13%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNY 216
           +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI   +T +EK     PN+
Sbjct: 19  KIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI---KTAVEKIDIDVPNW 75

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESM 273
             V AR  L  L        Y +   ATH     +  E +C    YI+ G++A  L  S+
Sbjct: 76  TFVAARLFLFDL--------YHRVGIATH----GVKGEAYCHLKDYIKFGIEAGRLIPSI 123

Query: 274 MD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALK 331
            D +DL  L + +   RD  F YLG++ LYDRY + +     IE+PQ  FM +AM LA  
Sbjct: 124 ADGYDLDELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQN 183

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
           E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++ GIF   +E A
Sbjct: 184 EKDKQSKAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMA 243

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q G RKGA+  Y
Sbjct: 244 LLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVY 303

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WTLF P EV DL 
Sbjct: 304 LEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLS 363

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P++ +KD  N  +
Sbjct: 364 ETFGDEFKAKYIAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTN 419

Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEET--------------AVC 600
           P  HVG + SSNLCTEI  N                 S+ EE+               V 
Sbjct: 420 PNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVS 479

Query: 601 NLGSINLLAHF--ANNQFDYD----KLAS--------------TIRTAVRVLDNVIDINC 640
            L S+N    F     + D D     LAS               + TA+R+LDNVID+N 
Sbjct: 480 ALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNF 539

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME IS++ I +S +
Sbjct: 540 YPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSD 599

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA E+G Y +F+GS W +G+ P D          +  +  TS   WD L+++VK  GMRN
Sbjct: 600 LASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVLREKVKKDGMRN 658

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV                  
Sbjct: 659 GYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------------------ 700

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LD 878
                        + R+  +    +  AFEID + +I++A+ RQKWIDQ QS N++  LD
Sbjct: 701 -------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLD 747

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 748 KASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg.
 gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg
          Length = 676

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/687 (39%), Positives = 414/687 (60%), Gaps = 32/687 (4%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV---YLAND 284
           R  ++ ++K+ +K     M+ LY      YI    G  + ++ +S +D  L     L + 
Sbjct: 7   RIAVSNLHKETKKVFSDVMEDLY-----NYINPHNGKHSPMVAKSTLDIVLANKDRLNSA 61

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YN
Sbjct: 62  IIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYN 118

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
           LLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G  
Sbjct: 119 LLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVA 178

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
            + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EF
Sbjct: 179 VSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEF 238

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y
Sbjct: 239 LDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLY 298

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  S
Sbjct: 299 ASYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCS 353

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           NLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN +
Sbjct: 354 NLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYY 413

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +L
Sbjct: 414 PVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDL 473

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y +++GS   +G+   D   +            T    W  LK+++   G+RNS
Sbjct: 474 AKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNS 523

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M 
Sbjct: 524 LLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMK 583

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+
Sbjct: 584 NQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPN 643

Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRS 907
             KL  ++   W  GLKT  YYLR+R+
Sbjct: 644 YGKLTSMHFYGWKQGLKTGMYYLRTRA 670


>gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
 gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
          Length = 870

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/790 (36%), Positives = 440/790 (55%), Gaps = 48/790 (6%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEG 263
           +  +    P+YA + AR  +  L        +K+ +K     +  LY      Y+  + G
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNG 107

Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A ++ E   +  + +   L + + Y+RDF ++Y G + L   Y L  NG   E PQ  
Sbjct: 108 RPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHM 167

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D 
Sbjct: 168 IMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDS 224

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+
Sbjct: 225 IEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVD 284

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  
Sbjct: 285 QGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGD 344

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF P+E   L D+YG+EFE  YE YE+   RG       I A  LW  +L    ETG+
Sbjct: 345 WTLFCPNEAPGLADVYGEEFEALYEKYEKDG-RGR----STIKAQKLWYAILEAQTETGN 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQF 616
           P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++
Sbjct: 400 PFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEY 459

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ S
Sbjct: 460 DFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDS 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +        
Sbjct: 520 PEAKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP------ 573

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 574 ----TDLWDWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLA 629

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW + M + +    GSI N+  IP D+K ++ T +EI    +
Sbjct: 630 GEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTI 689

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910
           ++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +
Sbjct: 690 VQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT 749

Query: 911 VEKSTLKGVD 920
           V++  LK VD
Sbjct: 750 VDQEQLKIVD 759


>gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
 gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans]
 gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
          Length = 854

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 285/765 (37%), Positives = 434/765 (56%), Gaps = 45/765 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +  +    +Y G++  +L+      + T+    P+YA + AR 
Sbjct: 22  VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T  Y K  K  +        EY     + G+ + ++ +   D  + +   
Sbjct: 82  AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+   +     R +
Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+YG EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++ +RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++G+
Sbjct: 368 EELYTKYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   S+ +E AVCNL SI L +   N++    +++DKL    +   R L+ 
Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTRNLNR 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + + +A++SN  HR I LG+ G   A   L +P+ S EA E+  +  E I   A
Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752
           + AS+ELA+E GAY ++ GS   QG+   D              NR  T    WD LK+ 
Sbjct: 543 VEASIELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQD 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus]
 gi|417658|sp|P32984|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus]
 gi|297239|emb|CAA48999.1| K4L [Variola virus]
 gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large
           subunit); putative [Variola major virus]
 gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa]
 gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus]
 gi|745175|prf||2015436BP K4L gene
          Length = 771

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Pan troglodytes]
          Length = 695

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/661 (40%), Positives = 403/661 (60%), Gaps = 25/661 (3%)

Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 13  GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD
Sbjct: 73  MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG
Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +
Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 479 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654

Query: 916 L 916
           L
Sbjct: 655 L 655


>gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 FDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
 gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
          Length = 874

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/772 (36%), Positives = 435/772 (56%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L        +K+ +K     +  LY      Y+  + G  A ++ E   +  + + 
Sbjct: 82  AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNGRPAPMISEKTREIVMKHA 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+  ++ EK   
Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGIHGEDVEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
            +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 VIESYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG+
Sbjct: 306 ADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGLADVYGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG       I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYEKYEKEG-RGRTT----IKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   ++ +E AVCNL SI L         ++D+ KL    +  V+ L+ 
Sbjct: 421 GTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQVVVKNLNR 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  +  E +   A
Sbjct: 481 IIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQIFETLYHAA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ELA+  G YSS++GS   QG+   D   +            T    WD LK  + 
Sbjct: 541 LTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP----------TDLWDWDALKTEIS 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 KHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK VD
Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVVD 762


>gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 807

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 279/763 (36%), Positives = 429/763 (56%), Gaps = 55/763 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYL 296
            +K+    ++ +Y     R    G+ + L+   + +  + +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETVRDMYSHVNER---SGLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRV++G+  ++ +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVSVGIHKEDIDS---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFNSGT   QLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNSGTPRAQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ +FL+LRKN G +  
Sbjct: 264 GTNGASNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFDFLELRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  +  W+LF P+E   L D +G EFE  Y  YE Q      
Sbjct: 324 RARDLFYGLWIPDLFMERVQTDGQWSLFCPNEAPGLADCWGAEFERLYTQYENQG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++LT   ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNSKSNQQNLGTIKSSNLCTEILEYTSP 438

Query: 595 EETAVCNLGSINLLAHFANNQ--------------------FDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L      N                     FD+DKLA    T    L+ 
Sbjct: 439 TETAVCNLASIALPRFVRENDIPLDSHPSKIVGSLDSKNRYFDFDKLAEVTATVTVNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK SN  HR IG+G+ G   A  LL +P+ SPE+ ++  +  E I +HA
Sbjct: 499 IIDVNHYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPESQQLNKDIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + +S E+A + G Y +++GS   +G+   D   ++           + R  W  L+  + 
Sbjct: 559 LKSSSEIATKEGTYETYQGSPVSKGILQPDMWNVIP----------SDRWDWAALRDMIS 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L    
Sbjct: 609 KNGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + + +GSI N++ IPDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 669 LWSPTLKNKIIHENGSIVNVKEIPDDLKAIYRTVWEIKQRTVVDMAADRGCFIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++++P+  KL  ++  AW  GLKT  YYLRSRSA    K T+
Sbjct: 729 IHMEKPNFAKLTSLHFYAWKKGLKTGMYYLRSRSAADAIKFTV 771


>gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+]
          Length = 901

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/759 (37%), Positives = 427/759 (56%), Gaps = 51/759 (6%)

Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 16  VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 75

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V++ +Y    P+      M            +E  +  + H+  +
Sbjct: 76  AVSNLHKQTKKQWSSVVSDLYHYVNPKNGRPSPM----------IAKETYECVMRHKDDL 125

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  +VY       +RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+   + E
Sbjct: 126 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGIWGDDIE 178

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E Y  +SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L+  AM+
Sbjct: 179 ---RVIETYTYMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTLKTCAMI 235

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 236 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 295

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D
Sbjct: 296 EPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNECPGLAD 355

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 356 CYGEEFEALYEKYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 410

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630
           QQ++GV+ SSNLCTEI   S+ +E AVCNL S+ L     +   +FD+ KL    +  VR
Sbjct: 411 QQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEVTQIVVR 470

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +ID+N + +++A  SN  HR IGLG+ G   A   L +P+ S EA E+  +  E I
Sbjct: 471 NLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNKQIFETI 530

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++ S +LA+E+G YS+++GS   +G+   D   +            +    WDELK
Sbjct: 531 YHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWNV----------KPSDLWDWDELK 580

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 581 AEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDL 640

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 641 VDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQS 700

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A
Sbjct: 701 QSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAA 739


>gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 438/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTL 750


>gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 854

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 285/765 (37%), Positives = 434/765 (56%), Gaps = 45/765 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +  +    +Y G++  +L+      + T+    P+YA + AR 
Sbjct: 22  VQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLAAEIAATMTTIHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T  Y K  K  +        EY     + G+ + ++ +   D  + +   
Sbjct: 82  AVSNLHKQT-TKQYSKVSKDLY--------EYINP--KTGLHSPMISKETYDIIMEHEDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+   +     R +
Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDI---PRVI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++K +GG
Sbjct: 188 ETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+YG EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YE++ +RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++G+
Sbjct: 368 EELYTKYEKE-NRGR----QTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGI 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   S+ +E AVCNL SI L +   N++    +++DKL    +   R L+ 
Sbjct: 423 IKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQVTKVVTRNLNR 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + + +A++SN  HR I LG+ G   A   L +P+ S EA E+  +  E I   A
Sbjct: 483 VIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWDELKKR 752
           + AS+ELA+E GAY ++ GS   QG+   D              NR  T    WD LK+ 
Sbjct: 543 VEASIELAKEEGAYETYPGSPASQGLLQFD------------LWNRKPTELWDWDTLKQD 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 591 LAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVD 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 651 LGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 LNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L D++G 
Sbjct: 306 SDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDDVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTQYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Nomascus leucogenys]
          Length = 695

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/661 (40%), Positives = 402/661 (60%), Gaps = 25/661 (3%)

Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 13  GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD
Sbjct: 73  MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 189

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG
Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +
Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 479 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 595 LRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654

Query: 916 L 916
           L
Sbjct: 655 L 655


>gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter
           butzleri RM4018]
 gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter
           butzleri RM4018]
          Length = 794

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 303/809 (37%), Positives = 438/809 (54%), Gaps = 113/809 (13%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK----EPNY 216
           +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI   +T +EK     PN+
Sbjct: 19  KIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI---KTAVEKIDIDVPNW 75

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESM 273
             V AR  L  L        Y +   ATH     +  E +C    YI+ G++A  L  S+
Sbjct: 76  TFVAARLFLFDL--------YHRVGIATH----GVKGEAYCHLKDYIKFGIEAGRLIPSI 123

Query: 274 MD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALK 331
            D +DL  L   +   RD  F YLG++ LYDRY + +     IE+PQ  FM +AM LA  
Sbjct: 124 ADGYDLDELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQMFMAIAMFLAQN 183

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
           E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++ GIF   +E A
Sbjct: 184 EKDKQSKAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNIEGIFDGYKEMA 243

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q G RKGA+  Y
Sbjct: 244 LLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQLGTRKGAIAVY 303

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WTLF P EV DL 
Sbjct: 304 LEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWTLFDPYEVRDLS 363

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P++ +KD  N  +
Sbjct: 364 ETFGDEFKAKYVAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPFLCWKDTANRTN 419

Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEET--------------AVC 600
           P  HVG + SSNLCTEI  N                 S+ EE+               V 
Sbjct: 420 PNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVDGGVTKKANKVS 479

Query: 601 NLGSINLLAHF--ANNQFDYD----KLAS--------------TIRTAVRVLDNVIDINC 640
            L S+N    F     + D D     LAS               + TA+R+LDNVID+N 
Sbjct: 480 ALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAIRMLDNVIDLNF 539

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME IS++ I +S +
Sbjct: 540 YPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEAISYNTIKSSSD 599

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA E+G Y +F+GS W +G+ P D          +  +  TS   WD L+++VK  GMRN
Sbjct: 600 LASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVLREKVKKDGMRN 658

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV                  
Sbjct: 659 GYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------------------ 700

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LD 878
                        + R+  +    +  AFEID + +I++A+ RQKWIDQ QS N++  LD
Sbjct: 701 -------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQGQSTNIFMSLD 747

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 748 KASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus]
 gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus]
          Length = 771

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLTAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMKDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL SI L     + QFD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii GT1]
 gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii VEG]
          Length = 877

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 292/773 (37%), Positives = 443/773 (57%), Gaps = 53/773 (6%)

Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +E+   GL  +     +++   N MY G+  S+L+     +S  +    P+++++ AR  
Sbjct: 81  IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSRLAARIA 140

Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276
           ++ L +      LT +                 +    Y+++ G +A+L+   + +F   
Sbjct: 141 IDNLHKNTTDNFLTVI-----------------DQLHGYVDKLGREAKLVSTEVYEFVRE 183

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MRVA G+   + EK 
Sbjct: 184 NEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGDVEK- 242

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+ +D + GIF  L++ A+++K
Sbjct: 243 --AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 300

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG KRKG++  YLE 
Sbjct: 301 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 360

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL  P+E   L +++
Sbjct: 361 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 420

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+  YE YER+  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 421 GDEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 475

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631
           ++G +  SNLCTE+   +S +E AVCNL S++L   F + +   FDY+ L   ++   R 
Sbjct: 476 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRESRTFDYEHLKRIVKVMTRN 534

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ SPEA  +     E I 
Sbjct: 535 LNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNIFECIY 594

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ AS ELA E G Y++++GS   QG+   D  G+            +    WD L++
Sbjct: 595 FAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPS---------SGLCDWDGLRE 645

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L 
Sbjct: 646 KIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 705

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +++ A  R  +IDQ+ 
Sbjct: 706 ERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSH 765

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T   VD +L
Sbjct: 766 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQL 815


>gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 428/747 (57%), Gaps = 41/747 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +  + +Y G++ ++L++    +   + +  P+++ + AR  +  L            
Sbjct: 41  ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLG 297
            K TH +      E +      G  A L+ E + +  +     L   + YERDF ++Y G
Sbjct: 89  HKNTHEKFSDTVTELYQITDGRGRHAPLVSEEVYNIVMANAEKLDKAIDYERDFDYDYFG 148

Query: 298 LQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            + L   Y L    + S IE PQ   MRVA+G+   + +    A+E Y+L+S+  F  +T
Sbjct: 149 FKTLERSYLLKRPSDKSCIERPQHMIMRVAVGIHGDDVDA---AIETYDLMSTRVFTHAT 205

Query: 356 PTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFNSGT HPQ+SSCFL ++  D + GI+  L++ AM++K +GG+G   T +R   ++I
Sbjct: 206 PTLFNSGTPHPQMSSCFLLSMKGDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYI 265

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH DV EFLDL+KN G + 
Sbjct: 266 RGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEE 325

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           +R  D+  A WIPDLFMKRV  N  WTLF P+E   L D YG EFE  YE YE+      
Sbjct: 326 QRARDLFYALWIPDLFMKRVMSNGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDG---- 381

Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             + RK + A +LW K+L    ETG P++ +KD  N +S Q+++G +  SNLC EI   +
Sbjct: 382 --IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYT 439

Query: 593 SSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           S +E AVCNL SI  N+        +D+D+L    +   R L+ VID N + + +A++SN
Sbjct: 440 SPDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVTKVVTRNLNKVIDRNYYPVPEARRSN 499

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  PY SPEA+++ +E  E I   A  AS+ELA++ G Y +
Sbjct: 500 MRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNEIFETIYHAACEASMELAKKDGPYET 559

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS   +G+   D   +  +         + R  W+ LK+ +K  GMRNS  +A  PTA
Sbjct: 560 FEGSPASEGILQFDMWDVTPD---------SGRWDWNSLKEEIKKNGMRNSLLIAPMPTA 610

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I G +++ +P  QN+YV+  ++G+F  VN  LV++L +  LW++ +   +    GS
Sbjct: 611 STAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGS 670

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  +E IP ++++++ T +EI    +++ A+ R  +IDQ+QSLN+++   +  KL  ++ 
Sbjct: 671 VQGVEEIPKEVQELYKTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHF 730

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTL 916
             W +GLKT  YYLR+++A    + TL
Sbjct: 731 YGWKLGLKTGQYYLRTKAAADAIQFTL 757


>gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma
           gondii RH]
          Length = 855

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 292/773 (37%), Positives = 443/773 (57%), Gaps = 53/773 (6%)

Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +E+   GL  +     +++   N MY G+  S+L+     +S  +    P+++++ AR  
Sbjct: 59  IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSRLAARIA 118

Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276
           ++ L +      LT +                 +    Y+++ G +A+L+   + +F   
Sbjct: 119 IDNLHKNTTDNFLTVI-----------------DQLHGYVDKLGREAKLVSTEVYEFVRE 161

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MRVA G+   + EK 
Sbjct: 162 NEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGDVEK- 220

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+ +D + GIF  L++ A+++K
Sbjct: 221 --AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 278

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG KRKG++  YLE 
Sbjct: 279 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 338

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL  P+E   L +++
Sbjct: 339 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 398

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+  YE YER+  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 399 GDEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 453

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631
           ++G +  SNLCTE+   +S +E AVCNL S++L   F + +   FDY+ L   ++   R 
Sbjct: 454 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRESRTFDYEHLKRIVKVMTRN 512

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ SPEA  +     E I 
Sbjct: 513 LNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNIFECIY 572

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ AS ELA E G Y++++GS   QG+   D  G+            +    WD L++
Sbjct: 573 FAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPS---------SGLCDWDGLRE 623

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L 
Sbjct: 624 KIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 683

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +++ A  R  +IDQ+ 
Sbjct: 684 ERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSH 743

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923
           SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T   VD +L
Sbjct: 744 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQL 793


>gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
 gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
          Length = 747

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/738 (37%), Positives = 420/738 (56%), Gaps = 43/738 (5%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           +   S  V  +   ++YDG++  +++T        +I  +P+Y  +  R           
Sbjct: 31  EKCDSSKVAQQVASSLYDGITAQEIDTLSAEICVGMITSDPDYETLATRI---------- 80

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
                     T   +Q + P  F   +++  KA ++ E +       + +D+  +RD+ F
Sbjct: 81  ----------TASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIDTKRDYDF 129

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            Y GL+ L   Y   ++G  +E PQ  FMRVA+G+  ++ +     +E Y+ +S   F+ 
Sbjct: 130 GYFGLKTLEKSYLQRLDGVLMETPQYMFMRVAIGIHGEDIDS---VLETYDKMSRGMFIH 186

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFN+GT  PQ+SSCFL    +D + GI+G L E A ++K++GG+G     VR   +
Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKEDSINGIYGTLTECAQISKWAGGIGMHIHDVRANKS 246

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNG+S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ EFL+LR N GD+
Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMEFLELRLNQGDE 306

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  D+ +A WIPDLFMKRV ++  W+LF PD+   L D  G+EFE  Y  YE ++   
Sbjct: 307 EARCRDLFSALWIPDLFMKRVEESGNWSLFCPDKAPGLSDAVGEEFEALYTKYEEES--- 363

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +    + A  +W+ +L    ETG P++ +KD CN +S Q+++GV+ SSNLCTEI   +
Sbjct: 364 --RATATVPAADVWKAILKSQTETGTPYMLYKDACNQKSNQKNLGVIKSSNLCTEILEFT 421

Query: 593 SSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
             +ETAVCNL SI L  +       FDY+KL    +T  + L+ VID N + +E A+KSN
Sbjct: 422 DKDETAVCNLASIALPKYVDPETKTFDYEKLHEVTKTVTKNLNRVIDRNFYPVETARKSN 481

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IGLG+ G      L    + S EA EI     E +   A+ AS ELA+  G Y +
Sbjct: 482 MRHRPIGLGVQGLADVFILCRHAFDSDEAKEINARIFETMYHAALEASSELAEVDGPYET 541

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS   QGV   D    + E   +L  +      WD LK+R+K  G+RNS  MA  PTA
Sbjct: 542 FEGSPASQGVLQFD----MWEGETKLHYD------WDALKERIKEKGLRNSLLMAPMPTA 591

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I G ++  +P   N+Y++  ++G+F +VN  LV++LK+  LW + M   +    GS
Sbjct: 592 STAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVDDLKEIGLWSKDMKDLMVKAGGS 651

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I NI  IPD++KK++ T +EI    +I+ A+ R ++IDQ+QS+NL+++ P+  KL  ++ 
Sbjct: 652 IQNIVDIPDEIKKLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTMSKLSSMHM 711

Query: 891 QAWLMGLKT-TYYLRSRS 907
            +W  GLKT  YYLRS++
Sbjct: 712 YSWKKGLKTGMYYLRSKA 729


>gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
 gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
          Length = 799

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 297/834 (35%), Positives = 459/834 (55%), Gaps = 66/834 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLE 199
           ++  DG   S    ++   +E  C  L        +V+ K++       +YDG++ S+L+
Sbjct: 3   VIKRDGRRESVRFDKITARIENLCYELDPKFIQPIEVAKKVI-----DGLYDGVTTSELD 57

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                   +L  K P+YA + AR          ++ ++K   ++  + M+ LY      Y
Sbjct: 58  NLAAEVCASLTVKHPDYAILAARI--------AISNLHKTTSQSFSNTMKRLYT-----Y 104

Query: 260 I--EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           I  + G  A L+   +      +   L   + Y+RDF ++Y G + L   Y + ++G  +
Sbjct: 105 INPKTGGNASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVV 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+  ++ +    AVE Y+LLS   F  +TPTLFN+GT  PQLSSCFL 
Sbjct: 165 ERPQHMLMRVAVGIHKEDIDA---AVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLL 221

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+  + 
Sbjct: 222 TMKDDSIDGIYDTLKQCAKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDM 281

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKG+   YLE WH DV++FLDL++N G +  R  D+  A WI DLFMKR
Sbjct: 282 TARYVDQGGGKRKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKR 341

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V QN  W+LF P+E   L D YG+EFE  YE YE++    E      + A  LW ++L  
Sbjct: 342 VEQNETWSLFCPNEAPGLSDCYGEEFERLYEKYEKEGRARET-----VKAQELWFEILES 396

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL S+ L     
Sbjct: 397 QIETGTPYMLYKDAANKKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVR 456

Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD+ KL    + A R L+ VID+N + +++A++SN  HR IGLG+ G   A 
Sbjct: 457 TGPDGKLFFDHQKLYEITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAF 516

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L +P+ S EA  + ++  E I + A+  S+ELA+  G Y +++GS   +G+   D  G
Sbjct: 517 IMLRMPFESAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWG 576

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +           ++ R  W ELK++VK +G+RNS  +A  PTA+ + I G ++  +P   
Sbjct: 577 VTP---------KSERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTT 627

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N+Y +  +SG+F VVN  L+ +L +  LWD+ M + L   +GS+ ++  +P ++K ++ T
Sbjct: 628 NIYTRRTLSGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKT 687

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +EI    +I+ A+ R  +I Q+QS+N++L +P+  KL  ++  AW  GLKT  YYLRS+
Sbjct: 688 VWEISQKVIIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQ 747

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDP-------NSSTHSLGIPSSCTSDTECEVC 953
           +A S  K TL     K N  P  D          S     I  S      CE+C
Sbjct: 748 AAASAIKFTLD----KSNLEPKVDKAMQEEIDAKSLKQDAISCSLDDPDGCEMC 797


>gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16]
 gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16]
          Length = 771

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G +I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPRLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIAQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 814

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 293/820 (35%), Positives = 452/820 (55%), Gaps = 58/820 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   S +  ++   V + C GL  + V   I+  +  + +Y G++ S+L+   
Sbjct: 3   MYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDELA 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKKPQKATHHEMQCLYP 253
             ++ +   + P+Y+ + AR  +  L +  +            YK P+     E   L  
Sbjct: 63  AQTAASFATQHPDYSILAARVSVSNLHKMTIARFSDLVEVFYNYKHPKTG---EPASLIS 119

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E   + +++       H+  +D  +V+        RDF ++Y G + L   Y L ++G  
Sbjct: 120 EEVYQIVQK-------HKDELDGAIVH-------ARDFEYDYFGFKTLEKSYLLKVDGKI 165

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ   MRV++G+     +   R +E YN LS  +F  +TPTLFN+GT  PQ+SSCFL
Sbjct: 166 AERPQLMLMRVSVGI---HGDDIPRVIETYNFLSERYFTHATPTLFNAGTNMPQMSSCFL 222

Query: 374 TTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
            T+ +D + GI+  L+  A+++KY+GG+G     VR   ++I GTNG S G++P L+V N
Sbjct: 223 MTMKEDSIDGIYDTLKNCAVISKYAGGIGLAIHNVRASQSYIRGTNGSSNGIVPMLRVFN 282

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QGG KRKG++  YLE WH DV  FLDLRKN G++  R  D+  A W+PDLFMK
Sbjct: 283 NTARYVDQGGGKRKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMK 342

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  N  W+L  P+E   L D +G EFE  YE YER+      KV + I A  LW  +L 
Sbjct: 343 RVKDNGTWSLLCPNECPGLADCFGDEFEALYERYEREG-----KVRQTIKAQQLWFAILD 397

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P++ FKD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L    
Sbjct: 398 SQVETGTPYMLFKDHCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLV 457

Query: 612 ANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
              Q      FD++KL        + L+ +ID N + IE+A++SN  HR IG+G+ G   
Sbjct: 458 VPGQYGQGGSFDFEKLREVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLAD 517

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
              +L IP+ SPEA ++  +  E I F A +AS +LA   G Y S+ GS   +G    D 
Sbjct: 518 CFQMLRIPFDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFD- 576

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              L  V+       ++R  W  LK ++   G+RNS  +A  PTA+ A I G ++S +P 
Sbjct: 577 ---LWNVQP------SNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPF 627

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+Y +  ++G+FTVVN  L+ EL  R +W E + + +   +GSI N+  IP ++++I 
Sbjct: 628 TSNMYNRRVLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIF 687

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904
            T +EI    +++ A+ R  +I Q+QSLN+++ +P+ KKL  ++  AW  GLKT  YYLR
Sbjct: 688 KTVWEIPQRAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLR 747

Query: 905 SRSATSVEKSTL---KGVDGKLNAVPVTDPNSSTHSLGIP 941
           +R      K T+   + V  K+  V + D  +S++ +  P
Sbjct: 748 TRPKADAIKFTVDQEQLVSNKMKEVKLVDKENSSNMVTPP 787


>gi|17555242|ref|NP_499039.1| RiboNucleotide Reductase family member (rnr-1) [Caenorhabditis
           elegans]
 gi|417657|sp|Q03604|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|3880121|emb|CAA79574.1| C. elegans protein T23G5.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 788

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 279/741 (37%), Positives = 430/741 (58%), Gaps = 41/741 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     ++ ++  + P YA + AR  +  L        +KK  K     M
Sbjct: 53  LYKGVTTVELDNLAAETAASMTTQHPEYALLAARIAVSNL--------HKKTNKVFSEVM 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
           + L+ E+   +   G  A ++ +   ++++ +   L + + Y+RD+++ Y G + L   Y
Sbjct: 105 KTLH-EF--HHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSY 161

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   +E PQ   MRV++G+     +    A+E YNL+S  +   ++PTLFNSGT  
Sbjct: 162 LLKINKEIVERPQQMLMRVSIGI---HGDDITSAIETYNLMSERYMTHASPTLFNSGTCR 218

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL T+ +D + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+
Sbjct: 219 PQMSSCFLLTMSEDSILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGL 278

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V N+TA  V+QGG KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A 
Sbjct: 279 IPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLAL 338

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV ++  W+L  P E   L D +G+EFE  Y  YE      E +V + + A 
Sbjct: 339 WIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYE-----AEGRVRKTVKAR 393

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +++   ETG P+IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL 
Sbjct: 394 KLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLA 453

Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L  +     +FD+ KLA   +   R L+ +ID+N + +E+A+ SN  HR IGLG+ G
Sbjct: 454 SIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQG 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                 L+  P+ S EA ++     E I + A+ AS ELA+  G YS+++GS   +G   
Sbjct: 514 LADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQ 573

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T +  W  L+K++   G+RNS  MA  PTA+ A I G ++SI
Sbjct: 574 FDMWGVTP----------TDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESI 623

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  +SGDF +VN  ++ +L +R LW + M + L  ++GSI NI+ IP D+K
Sbjct: 624 EPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIK 683

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
           +++ T +EI    +IE A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  Y
Sbjct: 684 ELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMY 743

Query: 902 YLRSRSAT-----SVEKSTLK 917
           YLR++ A      +V+K+ LK
Sbjct: 744 YLRTKPAVNAVQFTVDKNALK 764


>gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 698

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/715 (39%), Positives = 403/715 (56%), Gaps = 97/715 (13%)

Query: 255 YFCRYIEEGVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS 312
           + C Y E+G K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G 
Sbjct: 6   HLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGM 65

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE+PQ  FM +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC+
Sbjct: 66  PIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY 125

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + + PD++ GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ N
Sbjct: 126 IGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN 185

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D AVAV+Q G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKR
Sbjct: 186 DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKR 245

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLT 551
           V  N  WTLF P + +DL DLYG+ FE  YE YE+ ++   EI     + A  LW+K+L 
Sbjct: 246 VRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEI-----VEAKELWKKILL 300

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593
             FETG P++ FKD  N  +P  HVG++ SSNLCTEI  N+                   
Sbjct: 301 NYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHF 360

Query: 594 -SEETAVCNLG-----------------SINLLAHFANNQ---------------FDYDK 620
             E+  V + G                  + ++  + N+                +  + 
Sbjct: 361 DEEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKED 420

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +   + TA+R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +
Sbjct: 421 IERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHL 480

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELA 737
              DE ME ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+   +R+ L 
Sbjct: 481 NKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF 540

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               S   W +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG
Sbjct: 541 --DQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSG 598

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              VV                               +  +  D  + +  A+E+D   L+
Sbjct: 599 MIPVV-------------------------------VPNLSLDTWQYYTPAYELDQKILV 627

Query: 858 ESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++A+ R KWIDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 628 KAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 682


>gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva
           strain Muguga]
 gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative
           [Theileria parva]
          Length = 898

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/768 (37%), Positives = 431/768 (56%), Gaps = 42/768 (5%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V +  V       MY G+  S+L+     +   +    P+Y+++ A   ++ L +  L  
Sbjct: 92  VDAPRVTQSVINGMYTGIRTSELDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLND 151

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFA 292
            + +  +  H      Y   F         A L+ + + +F +     L  ++ Y RDF 
Sbjct: 152 -FSEVIRTLHS-----YKHVF------NTNASLISDDVFEFVMANKDRLNAEIDYSRDFQ 199

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++Y G + L   Y L  NG  +E PQ   MRV+ G+   + E   R ++ Y+L+S  +F 
Sbjct: 200 YDYFGFKTLERSYLLKTNGKIVERPQHMIMRVSAGIHCGDLE---RTIQTYHLMSQRYFT 256

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPTLFN+GTRHPQ+SSCFL  + DD L GIF  L + A ++K +GG+G     +R  G
Sbjct: 257 HATPTLFNAGTRHPQMSSCFLLDMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASG 316

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P LK+ N TA  V+QGG KRKG+   YLE WH D+ + LDLRKN G
Sbjct: 317 SYIRGTNGISNGIVPMLKIFNATAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHG 376

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  WTL  PDE   LH+++G EFE  Y  YE+Q  
Sbjct: 377 AEDQRARDLFYALWIPDLFMKRVEANKNWTLMCPDECRGLHEVWGDEFERLYTQYEQQG- 435

Query: 531 RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                + RK I A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLC EI 
Sbjct: 436 -----LGRKTIPAQKLWFAILQSQIETGTPYMLYKDACNAKSNQQNLGTIKSSNLCCEIV 490

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
             ++ +E AVCNL S+  L  F N Q   FD+ KL    R     L+ VID N + +++A
Sbjct: 491 QFTNKDEVAVCNLASV-ALPKFVNTQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQA 549

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR +G+G+ G      L+  P+ S EA E+     E + +  +S S++LA++ G
Sbjct: 550 RVSNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQLG 609

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D  G  A+V + L         WD+LK  ++  G+RNS  +A 
Sbjct: 610 TYETYEGSPASKGLLQFDLWG--AKVDNSL-------WDWDKLKADLREHGLRNSLFIAP 660

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ + I G ++S +P   N+Y +  +SG+F VVN  L+N+L +  LW+E M   L  
Sbjct: 661 MPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIELGLWNETMKQKLIA 720

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           ++GS+ +I+ IP  +K ++ T +EI    +I+ A+ R  +IDQ+QSLN+++++P+  KL 
Sbjct: 721 YNGSLKHIDEIPQHIKDLYKTVWEIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLT 780

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
            ++   W  GLKT  YYLR++ AT   K T+     +L A     PNS
Sbjct: 781 SMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDASISQL-AKNRAKPNS 827


>gi|103488896|gb|ABF71875.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 923

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/779 (36%), Positives = 437/779 (56%), Gaps = 56/779 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++ + L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V++ +Y    P+   H  M         + + E V   + H+   
Sbjct: 82  AVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPM-------IAKDVYECV---MRHKDEF 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E
Sbjct: 132 DSAIVY-------DRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWGDDVE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  + +D + GI+  L+  AM+
Sbjct: 185 ---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV E LDLRKN G +  R  D+  A WIPDLFMKRV QN  WTL  P E   L D
Sbjct: 302 EPWHADVFESLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE YE++      K  + + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYEKYEKEG-----KGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   S+ +E AVC L S+ L A   + N  +D+ KL    +  VR
Sbjct: 417 QKNLGTIRSSNLCTEIIEYSAPDEVAVCYLASLALSAFIDYENASYDFKKLHEVTQVVVR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  A ++  +  E I
Sbjct: 477 NLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A++AS +LA+E+G Y++++GS   QG+   D   +            T+   W  LK
Sbjct: 537 YHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----------TNLWDWTALK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 ADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL 923
           QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A      +V++  L+  D ++
Sbjct: 707 QSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALRATDDRV 765


>gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
 gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
          Length = 788

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 308/828 (37%), Positives = 448/828 (54%), Gaps = 107/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI 
Sbjct: 2   LTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V      K  K                Y+E G
Sbjct: 62  TAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKTLK---------------EYLEIG 106

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            K   + + M + F+L  L   +  +RD  F YLG++ LYDRY L    G+ IE+PQ  F
Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MGIAMFLAQNEDDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE  AD    K    I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYE--ADESIPK--ETIKAKDLWKRILTNYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------------C 600
            FKD  N  +P  H G++ SSNLCTEI  N+   +  +                     C
Sbjct: 403 CFKDNANRANPNYHSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDC 462

Query: 601 NL----------GSINLLAHFANNQFDYD------KLAS--------------TIRTAVR 630
            +           SIN    F + +   D       LAS               +  A+R
Sbjct: 463 GILKSSNKITSTDSINGKKVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE ME I
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI+AS +LAQE+G Y+ F GSLW QG+FPID     A+   +          WD L+
Sbjct: 583 SYNAINASCKLAQEKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYDWDSLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E 
Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE- 701

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                W+                           + +A+EID   +I++A+ RQKWIDQ 
Sbjct: 702 ----NWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S  + E ST+
Sbjct: 732 QSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQSVEA-ENSTM 778


>gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 886

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/778 (36%), Positives = 433/778 (55%), Gaps = 60/778 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++       V+  +Y     K Q+      Q  Y E   R+ +E          
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTY-ETVMRHADE---------- 130

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                     + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 131 --------FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG+EF+  YE YE++  RG+    + I A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGEEFDALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQVV 474

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E
Sbjct: 475 VRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQIFE 534

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   +++AS ELA+  G YS+++GS   QG+   D   +            T    WD 
Sbjct: 535 TIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ 
Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +ID
Sbjct: 645 DLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           Q+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens]
          Length = 695

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/661 (39%), Positives = 402/661 (60%), Gaps = 25/661 (3%)

Query: 263 GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 13  GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 72

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD
Sbjct: 73  MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 129

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG   G++P L+V N+TA  V
Sbjct: 130 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNPNGLVPMLRVYNNTARYV 189

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 190 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 249

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG
Sbjct: 250 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIESQTETG 304

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +
Sbjct: 305 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 364

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 365 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 424

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 425 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 478

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 479 ----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 534

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 535 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 594

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 595 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 654

Query: 916 L 916
           L
Sbjct: 655 L 655


>gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC
           30864]
          Length = 785

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 292/772 (37%), Positives = 441/772 (57%), Gaps = 42/772 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V + C GL    V +  +  +    +Y G++  +L+T    ++  L  K P+YA + AR 
Sbjct: 22  VNKLCYGLNSDYVDAVEITQKVINGVYPGVTTVELDTLAAETAAYLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280
            +  L +E         +K     M+ LY EY  +  + G  A LL + + +    +   
Sbjct: 82  AVSNLHKET--------KKQFSSVMRDLY-EY--QNPKTGKPAPLLADDVYEIIQRNADI 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF++ Y G + L   Y L ++G   E PQ   MRVA+G+     E     +
Sbjct: 131 LDSAVIYDRDFSYSYFGFKTLERSYLLKLHGKIAERPQHMLMRVAVGI---HKENIDLVL 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S   F  ++PTLFNSGT HPQLSSCFL T+ DD + GI+  L+  AM++K +GG
Sbjct: 188 ETYNLMSEKWFTHASPTLFNSGTPHPQLSSCFLLTMKDDSIEGIYETLKTCAMISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHID 458
           +G +   +R  G++I GTNG S G++P L+V N TA  V+QGG R+ GA   YLE WH D
Sbjct: 248 IGLNVHCIRASGSYIAGTNGHSNGLVPMLRVFNTTARYVDQGGNRRPGAFAMYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +FL+L+KNTG + +R  D+  A WIPDLFMKRV  +  W+L  P E   L + YG +F
Sbjct: 308 VFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWSLMCPHECPGLEETYGDKF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YER+      K  + I A  LW  +L    E+G P++ +KD CNI+S Q+++G 
Sbjct: 368 EELYTRYEREG-----KARKVIKAQKLWFAILESQTESGTPYMLYKDACNIKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637
           +  SNLCTEI   SS +E AVCNL S++L     +++ +D+ KL    +   + L+ +ID
Sbjct: 423 IKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVRSDRTYDFKKLHEITQVVTKNLNRIID 482

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + + +A+KSN  HR IGLG+ G   A   + +P+ S +A ++  E  E I   A++A
Sbjct: 483 INYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDSEDAKKLNREIFETIYHAALTA 542

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTI 756
           SVE+A++ G Y ++ GS   QG+   D  G+            TS L  WD L+ ++   
Sbjct: 543 SVEMAKKSGPYETYAGSPVSQGILQHDMWGV----------KETSGLWDWDALRAQIAQH 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+++L +  LW
Sbjct: 593 GIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNQHLLHDLMELGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ M + +    GSI  IE IP  ++ ++ T +E+    LI+ A+ R  +IDQ+QS N++
Sbjct: 653 NDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTLIDMAADRGAYIDQSQSFNVH 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           + EP+  KL  ++  AW  GLKT  YYLR+R A +  + T   VD K  A P
Sbjct: 713 IAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFT---VDQKALAAP 761


>gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
 gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
          Length = 878

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 291/804 (36%), Positives = 443/804 (55%), Gaps = 64/804 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++  L    P+YA + AR  +  L        +K 
Sbjct: 41  LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARIAVSNL--------HKN 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    M  LY     R    G +A L+ + + D    +   L ++++Y+RDF ++Y 
Sbjct: 93  TEKSFSKTMDKLYTY---RNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYF 149

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I+G  +E PQ   MRVA+G+  ++ E    A+  Y+ +S   F  ++P
Sbjct: 150 GFKTLERSYLLRIDGKVVERPQHMLMRVAVGIHKEDIES---AITTYHAMSERWFTHASP 206

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +RG G++I 
Sbjct: 207 TLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIR 266

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   Y+E WH DV +FLDLRKN G +  
Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEA 326

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  +  W+LF P+E   L D +G+EFE  Y  YE++      
Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEG----- 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  R + A  LW  +L    ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S 
Sbjct: 382 RSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSP 441

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
           +E AVCNL SI L                        AN  FD++KLA   +   R L+ 
Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNK 501

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N +   KA++SN  HR IGLG+ G      LL + + SPEA E+  +  E +   A
Sbjct: 502 IIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAA 561

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +S S ELA+  G Y ++ GS   QGV   D  G+     D        R  W+EL+ R+ 
Sbjct: 562 LSTSCELAERDGPYETYAGSPVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIA 614

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  
Sbjct: 615 QHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + ++L   +GS+  +E IP++LK ++ T +EI    L++ A+ R  +IDQ+QS N
Sbjct: 675 IWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EKSTLKGVDGK 922
           +++ +P+  KL  ++  AW  GLKT  YYLR+++A              +K T +G    
Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAA 793

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTS 946
             A P     S + +LG+  + T+
Sbjct: 794 TAATPQMKMPSMSGNLGLTPNITA 817


>gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus]
 gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96]
          Length = 771

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAIIAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 YDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii]
          Length = 878

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 291/804 (36%), Positives = 443/804 (55%), Gaps = 64/804 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++  L    P+YA + AR  +  L        +K 
Sbjct: 41  LVAQKVAGGVYKGVTTSELDELAAETAAALTSTHPDYAILAARIAVSNL--------HKN 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    M  LY     R    G +A L+ + + D    +   L ++++Y+RDF ++Y 
Sbjct: 93  TEKSFSKTMDKLYTY---RNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYF 149

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I+G  +E PQ   MRVA+G+  ++ E    A+  Y+ +S   F  ++P
Sbjct: 150 GFKTLERSYLLRIDGKVVERPQHMLMRVAVGIHKEDIEA---AITTYHAMSERWFTHASP 206

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +RG G++I 
Sbjct: 207 TLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIR 266

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   Y+E WH DV +FLDLRKN G +  
Sbjct: 267 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEA 326

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  +  W+LF P+E   L D +G+EFE  Y  YE++      
Sbjct: 327 RARDLFYGLWIPDLFMERVEADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEG----- 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  R + A  LW  +L    ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S 
Sbjct: 382 RSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSP 441

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
           +E AVCNL SI L                        AN  FD++KLA   +   R L+ 
Sbjct: 442 DEIAVCNLASIALPRFVRERGSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNK 501

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N +   KA++SN  HR IGLG+ G      LL + + SPEA E+  +  E +   A
Sbjct: 502 IIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAA 561

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +S S ELA+  G Y ++ GS   QGV   D  G+     D        R  W+EL+ R+ 
Sbjct: 562 LSTSCELAERDGPYETYAGSPVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIA 614

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  
Sbjct: 615 QHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMG 674

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W   + ++L   +GS+  +E IP++LK ++ T +EI    L++ A+ R  +IDQ+QS N
Sbjct: 675 IWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFN 733

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV-----------EKSTLKGVDGK 922
           +++ +P+  KL  ++  AW  GLKT  YYLR+++A              +K T +G    
Sbjct: 734 VFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAA 793

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTS 946
             A P     S + +LG+  + T+
Sbjct: 794 TAATPQMKMPSMSGNLGLTPNITA 817


>gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis ER-3]
          Length = 886

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/778 (36%), Positives = 433/778 (55%), Gaps = 60/778 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++       V+  +Y     K Q+      Q  Y E   R+ +E          
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTY-ETVMRHADE---------- 130

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                     + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 131 --------FNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG+EF+  YE YE++  RG+    + I A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGEEFDALYEKYEKEG-RGK----KTIKAQKLWYAILEAQTETGNPFMLYKDACNKK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL    +  
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQVV 474

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPEA ++  +  E
Sbjct: 475 VRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQIFE 534

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   +++AS ELA+  G YS+++GS   QG+   D   +            T    WD 
Sbjct: 535 TIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----------TDLWDWDS 584

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ 
Sbjct: 585 LKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLK 644

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +ID
Sbjct: 645 DLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFID 704

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           Q+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 705 QSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 813

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/779 (35%), Positives = 440/779 (56%), Gaps = 48/779 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    +++  + + C GL    V+  ++  +  + +Y G++ ++L+   
Sbjct: 1   MYVVKRDGKKQSCQFDKIQSRISKLCYGLDQKFVNEAVISQKVIQGVYPGVTTTELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   + P+YA + AR  +  L +E      K+  K         +P+        
Sbjct: 61  AQTAASFSTQHPDYAVLAARIEVSNLHKET----EKQFSKVVEAFYNYTHPK-------T 109

Query: 263 GVKARLLHESMMDFDLVYLANDLK-----YERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           G  A L+ + +  +D+V    D+      ++RDF F+Y G + L   Y L ++G   E P
Sbjct: 110 GEPAPLVSKEV--YDVVNANKDVLDGAVIHDRDFEFDYFGYKTLEKSYLLKLHGEIAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRV++G+ + + E   R +E YNLLS   F  +TPTLFN+GT +PQ+SSCFLT + 
Sbjct: 168 QHMLMRVSVGIHMGDIE---RVLETYNLLSQRFFTHATPTLFNAGTPNPQMSSCFLTCIK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A+++KY+GG+G   + VR   ++I GTNG S G++P L+V N+TA 
Sbjct: 225 ADSIDGIYDTLKNCAVISKYAGGIGMSISNVRASASYIRGTNGTSNGIVPMLRVFNNTAR 284

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG KRKG++ AY+E WH D+  FLDLRKN G++  R  D+  A WIPDLFM+RV Q
Sbjct: 285 YVDQGGGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQ 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTL  P+E   L   +G+EF+  YE YER+      K  + I A  LW  +L    E
Sbjct: 345 NGDWTLMCPNECPGLDTCWGEEFKTLYEKYEREG-----KGRKTIKAQQLWFAVLDSQVE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFAN 613
           TG P++ +KD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L      A+
Sbjct: 400 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPAD 459

Query: 614 N-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           N      FD + L    +   + L+ VID N + +E+A++SN  HR IG+G+ G   A  
Sbjct: 460 NFGGEGHFDLENLKHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFM 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ +P+ SPEA ++  +  E I F A  AS+ELA++ G Y +++GS   +G    D  G+
Sbjct: 520 MMKLPFESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWGV 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                       ++   W  LK ++   GMRNS  MA  PTA+ A I G ++S +P   N
Sbjct: 580 ----------EPSNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSN 629

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  ++G+FT+VN  L+ EL    LW E + + +    GS+  +  IP  ++ ++ T 
Sbjct: 630 MYNRRVLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTV 689

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           +EI    +++ A+ R  +I Q+QS+N+++ EPS  KL  ++  AW  GLKT  YYLR+R
Sbjct: 690 WEIPQRAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTR 748


>gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
 gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
          Length = 789

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 309/824 (37%), Positives = 439/824 (53%), Gaps = 109/824 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +       EYF R  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFERGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + +  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+  D   +K    I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEK--DDSIVKEI--IDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN-- 601
           FKD  N  +P  H G++ SSNLCTEI  N+                     EE  V +  
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGG 462

Query: 602 ----------LGSINLLAHFANNQFDYD--------------------KLASTIRTAVRV 631
                     L SIN    F   +F  D                     LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWDE 748
           + AI AS  LA E+G+Y  FKGS W +G+FPID     A+   +RD L     S   WD+
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRDGLFAQ--SSCDWDQ 640

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  
Sbjct: 641 LRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNLNL 700

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E  Q                                +  A+E+D   L+++A+ R KWID
Sbjct: 701 ETWQ-------------------------------YYTPAYELDQKILVKAAAVRGKWID 729

Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q QSLN++  LD+ SG  L+ IY  A  +G+K+TYYLRS S  S
Sbjct: 730 QGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773


>gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 816

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 295/806 (36%), Positives = 441/806 (54%), Gaps = 61/806 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S+L+     ++ ++  K P+YA++ AR  +  L +  L + + +
Sbjct: 38  LVAQKVASGVYKGVTTSELDELAAETAASMTSKHPDYAQLAARIAVSNLHKNTLKS-FSE 96

Query: 240 PQKATHHEMQ---CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
             K  H  +      +       + E +KA   + +  D ++VY       +RDF ++Y 
Sbjct: 97  TMKVMHEHVNKRNGKWSPLLADDVYEIIKA---NAATFDAEIVY-------DRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L ++G  +E PQ   MRVA+G+  K+ EK   A++ Y++LS      ++P
Sbjct: 147 GYKTLERSYLLRVDGKIVERPQHLLMRVAIGIH-KDVEK---AIDTYHMLSERWMTHASP 202

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFNSGT  PQLSSCFL  + +D + GI+  L+E A ++K +GG+G     +R   ++I 
Sbjct: 203 TLFNSGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 262

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ ++LDLRKN G +  
Sbjct: 263 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFDWLDLRKNHGKEEA 322

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    W  DLFM+RV  N  WTL  P+E   L D +G EFE  Y +YE Q      
Sbjct: 323 RARDLFYGLWTNDLFMRRVESNGDWTLMCPNECPGLADSWGAEFEKLYTSYEEQG----- 377

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + I A  LW  +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 378 KGKKTIKAQQLWFAILEAQVETGNPYMLFKDACNSKSNQQNLGTIRSSNLCTEIVEFTSP 437

Query: 595 EETAVCNLGSINLLAHF-----------------------ANNQFDYDKLASTIRTAVRV 631
           EETAVCNL SI L                           A+  FD+ KLA   R   R 
Sbjct: 438 EETAVCNLASIALPRFVVEENPASPTGRTEAKKLRGSLGAASRTFDHAKLAEITRKVTRN 497

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +ID+N + +E A++SN  HR IGLG+ G      LL + + SPEA ++  E  E I 
Sbjct: 498 LNRIIDVNYYPVETARRSNMRHRPIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIY 557

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A++ S  +A   G Y ++ GS   +G+   D  G+         M    R  W  L+ 
Sbjct: 558 FAALTESNAIAAVDGHYETYPGSPVSKGILQPDMWGV-------TEMPGGDRHDWAALRA 610

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++ T G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L+N+L 
Sbjct: 611 KIATSGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLNDLT 670

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +  LWD  + ++L  ++GS+  ++ IPD LK I+ T +EI    L++ A+ R  +IDQ+Q
Sbjct: 671 ELGLWDPKLKNELIANNGSVQGLD-IPDHLKAIYKTVWEIKQRVLVDMAADRGAFIDQSQ 729

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S N+++ + +  KL  ++  AW  GLKT  YYLRSR+A    K T+    GK NA    D
Sbjct: 730 SFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAVKFTVDQA-GKGNAQKSAD 788

Query: 931 PN---SSTHSLGIPSSCTSDTECEVC 953
           P+    +  +  +  S  +  EC +C
Sbjct: 789 PDMEEEARMAAKLACSLANKDECVMC 814


>gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria
           annulata strain Ankara]
 gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative
           [Theileria annulata]
          Length = 891

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 289/782 (36%), Positives = 437/782 (55%), Gaps = 42/782 (5%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V +  V       MY G+  S+L+     +   +    P+Y+++ A   ++ L +  L  
Sbjct: 92  VDAPRVTQSVINGMYTGIRTSELDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLND 151

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFA 292
             +  +    H  + +Y             A L+ + + +F +     L  ++ Y RDF 
Sbjct: 152 FSEVIR--VLHSYKHVY----------NTNASLISDDVFEFVMENKDRLNAEIDYSRDFQ 199

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++Y G + L   Y L  NG  +E PQ   MRV+ G+   + E   R ++ Y+L+S  +F 
Sbjct: 200 YDYFGFKTLERSYLLKTNGKIVERPQHMIMRVSAGIHCGDLE---RTIQTYHLMSQRYFT 256

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPTLFN+GT+HPQ+SSCFL  + DD L GIF  L + A ++K +GG+G     +R  G
Sbjct: 257 HATPTLFNAGTKHPQMSSCFLLDMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASG 316

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P LK+ N TA  V+QGG KRKG+   YLE WH D+ + LDLRKN G
Sbjct: 317 SYIRGTNGISNGIVPMLKIFNSTAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHG 376

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  WTL  PDE   L++++G EFE  Y  YE+Q  
Sbjct: 377 SEDQRARDLFYALWIPDLFMKRVEANKNWTLMCPDECRGLYEVWGDEFERLYTQYEQQG- 435

Query: 531 RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                + RK I A  LW  +L    ETG P++ +KD CN +S QQ++G + SSNLC EI 
Sbjct: 436 -----MGRKTIPAQKLWFAILQSQIETGTPYMLYKDACNSKSNQQNLGTIKSSNLCCEIV 490

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
             +S +E AVCNL S+  L  F N Q   FD+ KL    R     L+ VID N + +++A
Sbjct: 491 QFTSKDEVAVCNLASV-ALPKFVNTQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQA 549

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR +G+G+ G      L+  P+ S EA E+     E + +  +S S++LA++ G
Sbjct: 550 RASNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQYG 609

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y S++GS   +G+   D  G  A+V + L         WD+LK  ++  G+RNS  +A 
Sbjct: 610 TYESYEGSPASKGLLQFDLWG--AKVDNSL-------WDWDKLKADLREHGLRNSLFIAP 660

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ + I G ++S +P   N+Y +  +SG+F VVN  L+N+L    LW+E M   L  
Sbjct: 661 MPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIDLGLWNETMKQKLIA 720

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           ++GS+ +I+ IP  +K+++ T +EI    +I+ A+ R  +IDQ+QSLN+++++P+  KL 
Sbjct: 721 YNGSLKHIDEIPSHIKELYKTVWEIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLT 780

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            ++   W  GLKT  YYLR++ AT   K T+     +L A     P +S  S G  +S  
Sbjct: 781 SMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDASISQL-AKSRVKPANSIMSDGNMTSIM 839

Query: 946 SD 947
           SD
Sbjct: 840 SD 841


>gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
 gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
          Length = 814

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/785 (36%), Positives = 444/785 (56%), Gaps = 55/785 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESD 197
           + ++  DG   S    ++   +E+   GL        +V+ K+V       +YDG++ ++
Sbjct: 1   MYVIKRDGRRESVKFDKVTARIEKLSYGLDATYVQPVEVAKKVV-----SGIYDGVTTAE 55

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     ++ ++  K P+YA + AR  +  L +  L        K+    M+ LY     
Sbjct: 56  LDNLAAETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSATMKRLY----- 102

Query: 258 RYIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            YI+   G  A L+   + +    +   L + + Y+RD++++Y G + L   Y L + G 
Sbjct: 103 TYIDSKTGENASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYKTLEKSYLLKVEGK 162

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ   MRVA+G+     E  + A+E Y+LLS   F  +TPTLFN+GT  PQ+SSCF
Sbjct: 163 IVERPQHMLMRVAIGI---HQEDVQAAIETYHLLSEKWFTHATPTLFNAGTPKPQMSSCF 219

Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+ +D + GI+  L+  A++++ +GG+G     VR  G +I GTNG+S G++P L+V 
Sbjct: 220 LLTMKEDSINGIYDTLKNCALISQSAGGIGLSIHDVRATGTYIKGTNGQSNGIVPMLRVF 279

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ +FLDL+KN G + +R  D+  A WIPDLFM
Sbjct: 280 NDTARYVDQGGGKRKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFM 339

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+LF P E   L D + +EFE  YE YER+      +  + I A  LW  ++
Sbjct: 340 KRVEANDTWSLFCPHECPGLADTHSEEFEKLYEQYEREG-----RARKTIKAQDLWFAIM 394

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL SI L   
Sbjct: 395 ESQIETGTPYMLYKDHANSKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKF 454

Query: 611 FANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                     FD+ KL    +   R L+ +ID+N + + +A+KSN  HR IG+G+ G   
Sbjct: 455 VEQGADGFMHFDHQKLYEITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLAD 514

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
           A  ++ +P+ S EA  +  +  E I + ++ AS+ELA + G Y ++ GS   QGVF  D 
Sbjct: 515 AFCMMRMPFDSDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDM 574

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +  E         + R  W++L+K V   G+RNS  +A  PTA+ + I G ++  +P 
Sbjct: 575 WNVTPE---------SKRWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPF 625

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+YV+  +SG+F VVN +L+ +L +  LW E M ++L    GS+  I  IP ++K ++
Sbjct: 626 TSNIYVRRVLSGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLY 685

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904
            TA+EI    L++ ++ R  +I Q+QSLN++++E +  KL  ++  AW  GLKT  YYLR
Sbjct: 686 KTAWEIKQRSLLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLR 745

Query: 905 SRSAT 909
           +R+A+
Sbjct: 746 TRAAS 750


>gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 854

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/787 (36%), Positives = 438/787 (55%), Gaps = 61/787 (7%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231
           V    V  +  + +Y G++   L+     ++ T+  K P+YA + AR  +  L +E    
Sbjct: 65  VDPSAVAIQVIRGLYSGVTTVVLDNLAAETAATMATKHPDYAILAARIDVSNLHKETKKS 124

Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
              V+  ++      T+H    +   Y+               +++  +   L + + Y+
Sbjct: 125 FSEVMHDLHYAKNPVTNHYNPIISKHYY---------------NIIKNNAEKLDSAIIYD 169

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF + Y+G + L   Y L ING  +E PQ   MRVA+G+     +K    +E YN LS 
Sbjct: 170 RDFNYNYIGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHENNIDK---VIETYNYLSE 226

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F  ++PTLFN+ T + Q+SSCFL T+ DD +  IFG L+  A+++KY+GG+G +   +
Sbjct: 227 RYFTHASPTLFNACTNNQQMSSCFLLTLEDDSIKSIFGTLKNCALISKYAGGIGLNVHCI 286

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R        T  ++ G+I  LK+ ND A+ V+QGG KR GA   YLE WH D+ +FL+L+
Sbjct: 287 RAKNVEDTSTK-RTNGLISILKLYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELK 345

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +N GD   R  D+    WIPDLFM+RV  +  W+L  P E   L D++G EF+  Y  YE
Sbjct: 346 RNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPHESPGLSDVWGDEFKELYTRYE 405

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++   G  K  +++ A ++W  +L    ETG P++ +KD CN +S  QH+G V  SNLCT
Sbjct: 406 KE---GRYK--KQVEARSVWLAILRSQVETGTPYMLYKDHCNRKSNHQHIGTVKCSNLCT 460

Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   S   E AVCNL SI  N+  +     FD+DKL +  +   R LD VID+N + IE
Sbjct: 461 EIIEYSGPGEVAVCNLASIAVNMFVNIDTKIFDFDKLKTVAKIVTRNLDKVIDVNFYPIE 520

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + + SNH HR IG+G+ G   A  L+  P+ S EA E+  +  E + + A+ AS ELA E
Sbjct: 521 ETRTSNHRHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAE 580

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y +++GS   +G+   D   +            T+   WDELK ++   G+RNS  +
Sbjct: 581 KGTYETYQGSPVSKGILQYDMWNV----------KPTNLWDWDELKAKIAKHGVRNSLLI 630

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ A I G ++SI+P   N+YV+  +SG+F +VN  L+ +L  R LWDE M +++
Sbjct: 631 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEI 690

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             + GS+ NIERIPDDLK+++ T +EI    ++E A+ R  ++DQ+QSLN+++ +P+ +K
Sbjct: 691 LANFGSVQNIERIPDDLKELYKTVWEIPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEK 750

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD----------GKLNAVPV 928
           L  ++   W  GLKT  YYLR++ A      +V+KS L+  D            +N+ P+
Sbjct: 751 LTSMHFFGWKSGLKTGMYYLRTKPAANPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPI 810

Query: 929 TDPNSST 935
             PN  +
Sbjct: 811 QSPNQDS 817


>gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 796

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 296/800 (37%), Positives = 452/800 (56%), Gaps = 50/800 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +A  L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L
Sbjct: 2   LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +  ++   + K P+Y  +  R  +  L +    +V +       H++          
Sbjct: 62  DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH--------- 112

Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
             + G  A LL + + +    +   L   + Y+RD  FE+ G + L   Y L ++  R  
Sbjct: 113 --DTGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGE 170

Query: 314 ---IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
               E PQ  F+RVA+G+  ++ E+ K   E Y+ +S   F  +TPTLFN+GT  PQ+SS
Sbjct: 171 REIAERPQQMFLRVALGIHGEDMERVK---ETYDHMSLGDFTHATPTLFNAGTPFPQMSS 227

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  + +D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+
Sbjct: 228 CFLVAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLR 287

Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           V N+TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDL
Sbjct: 288 VWNNTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDL 347

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV     WTL  P     L D YG +F+  YE YER+ +RG     + + A +LW  
Sbjct: 348 FMERVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYERE-NRG----VKTVQAQSLWFA 402

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           +L    ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI  L
Sbjct: 403 ILESQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASI-AL 461

Query: 609 AHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
             F + +   +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G   
Sbjct: 462 PRFVDKERRIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMAD 521

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
              L+ +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D 
Sbjct: 522 TFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFD- 580

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              L E +      R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P 
Sbjct: 581 ---LWEQKP-----RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPF 632

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++
Sbjct: 633 TSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELY 692

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904
              +EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L  ++  AW  GLKT  YYLR
Sbjct: 693 RVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLR 752

Query: 905 SRSAT-----SVEKSTLKGV 919
           S+ A      +V+ +TLKG+
Sbjct: 753 SKPAADAIKFTVDPNTLKGL 772


>gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
 gi|150858403|gb|EDN33595.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
          Length = 909

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 278/755 (36%), Positives = 433/755 (57%), Gaps = 39/755 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    + +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHIDAAAITQKVISGVYQGVNTIELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K   H ++ LY     R    G  + ++ +   +  + +   
Sbjct: 82  AVSNL--------HKQTKKQFSHVIRDLYQYTNPR---NGTASPMISKQTYECVMRHEEE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E    A+
Sbjct: 131 LNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIMRVAVGIHGDDIES---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S+ +F  ++PTLF++GT   QLSSCFL  + +D + GI+  L+  AM++K +GG
Sbjct: 188 ETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSIDGIYDTLKICAMISKNAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +R  GA+I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D+YG EF
Sbjct: 308 VFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMCPNECPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE+YE+ A +G     + I A  LW  +L    ETG+P++ +KD CN +S Q+++G 
Sbjct: 368 EALYESYEK-AGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTEI   S+ +E A CNL SI L      N+  +D+ KL   ++  VR L+ +I
Sbjct: 423 IRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQVVVRNLNKII 482

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + + +A+KSN  HR I +G+ G   A   L +P+ SPEA  +  +  E I   A++
Sbjct: 483 DINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALT 542

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           +SVE+A+E G Y +++GS   +G    D  G+            T    WD LK+ +K  
Sbjct: 543 SSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP----------TDLWDWDSLKQSIKQH 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS+N++
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIH 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           + +P+  K+  ++   W +GLKT  YYLR+ +A++
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASA 747


>gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio]
 gi|3914656|sp|P79732|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit; AltName: Full=Ribonucleotide reductase protein
           R1 class I
 gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio]
          Length = 794

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/765 (36%), Positives = 434/765 (56%), Gaps = 48/765 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ T   K P+YA + AR 
Sbjct: 22  IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAETAATSTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L +E         +K     M+ LY      Y+   + +R  H  M+     D+V 
Sbjct: 82  AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 125

Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
              D     + Y+RDF++ + G + L   Y L ING   E PQ   MRV++G+     E 
Sbjct: 126 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 182

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++
Sbjct: 183 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G   + +R  G +I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P++   L + 
Sbjct: 303 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  Y  YE++      +  R + A  LW  ++    ETG P++ +KD CN +S +
Sbjct: 363 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNR 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
           Q++G +  SNLCTEI   +S++E AVCNL SI L  +  + + FD+ KLAS  +  V+ L
Sbjct: 418 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 477

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + +++A+ SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I +
Sbjct: 478 NKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYY 537

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ +S ELA E G Y ++ G    +G+   D                T    W  LK++
Sbjct: 538 AALESSCELAAEYGPYQTYAGCPVSKGILQYDM----------WEKTPTDLWDWAALKEK 587

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +
Sbjct: 588 IANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTE 647

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LW+E M + +   +GSI  I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 648 RGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQS 707

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ EP+  KL  ++   W  GLKT  YYLR++   +  + TL
Sbjct: 708 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTL 752


>gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/761 (37%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK ++KT 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIKTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|222823071|ref|YP_002574644.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
 gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
          Length = 791

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/824 (36%), Positives = 444/824 (53%), Gaps = 109/824 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A + L +VS   +  +      DG+S  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTTDAVANLDNVSQSELEVDAKIQFRDGISTEEIQQTLIK 60

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+   PN+  V AR  L  L        YKK    T ++       +   Y+E+G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDL--------YKKVSGFTGYK-------HLREYLEKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K  R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILIGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S+F  M +TPTL N+ T   QLSSC++ +  D++ 
Sbjct: 166 MAIAMFLAQNELDSQTWAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + + L DLYG+EFE  YE +E+     E  V   + A  LW+K+L   FE+G P++
Sbjct: 346 FDPADTASLCDLYGQEFEKRYEEFEKD----ESIVKEIVDAKELWKKILLSYFESGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------------SSEETA--- 598
            FKD  N  +P  H G++ SSNLCTEI  N+                      EE     
Sbjct: 402 CFKDSANKTNPNSHAGIIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDG 461

Query: 599 --------VCNLGSIN-----LLAHFANN---------QFDYDKLAS------TIRTAVR 630
                   V  L SIN     ++  + N            +  K+ +       + TA+R
Sbjct: 462 GYKKLAKKVSTLDSINGKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E  E  D  ME I
Sbjct: 522 MLDNVIDLNFYPHVKVKNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDEL 749
           S+ AI AS  LA E+G+Y  F+GS W +G+ PID     A ++     +   S   W++L
Sbjct: 582 SYEAILASSNLALEKGSYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSECDWEKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVN 808
           ++++K  G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   TVV +   N
Sbjct: 642 REKLKRDGIRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPTVVPNLSAN 701

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                  W                          + +  A+E+D   L+++A+ R KWID
Sbjct: 702 ------TW--------------------------QYYTPAYELDQKILVKAAAIRGKWID 729

Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 730 QGQSLNIFVSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 286/768 (37%), Positives = 436/768 (56%), Gaps = 51/768 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L        +K+  K      + LY      YI        LH  M+    +D++ 
Sbjct: 82  AVSNL--------HKQTTKQFSQVSKELY-----DYINPKTD---LHSPMISKETYDVIQ 125

Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + ++RDF + Y G + L   Y L ING   E PQ   MRVA+G+   + EK
Sbjct: 126 KHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGDDIEK 185

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
               +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  + +D + GI+  L+  A+++
Sbjct: 186 ---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSIDGIYDTLKTCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L ++
Sbjct: 303 PWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLPEV 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EFE  YE YER+  RG       I A  LW  +L    ETG P++ +KD CN ++ Q
Sbjct: 363 YGDEFEALYEKYEREG-RGR----STIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629
           +++G++ SSNLC EI   SS EE AVCNL SI L +   ++     +++DKL    +T  
Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEVTKTVT 477

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             L+ +ID N + + +A++SN  +R I LG+ G   A   L +P+ S EA E+  +  E 
Sbjct: 478 GNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFET 537

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ AS+ELAQ+ G Y S++GS   QG+   D   L      EL         WD L
Sbjct: 538 IYHGAVEASIELAQKEGPYESYEGSPASQGLLQFD---LWDRKPTEL-------WDWDTL 587

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +
Sbjct: 588 KQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI    +I+ A+ R  +IDQ
Sbjct: 648 LVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQ 707

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T+
Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755


>gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 286/768 (37%), Positives = 436/768 (56%), Gaps = 51/768 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L        +K+  K      + LY      YI        LH  M+    +D++ 
Sbjct: 82  AVSNL--------HKQTTKQFSQVSKELY-----DYINPKTD---LHSPMISKETYDVIQ 125

Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + ++RDF + Y G + L   Y L ING   E PQ   MRVA+G+   + EK
Sbjct: 126 KHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGDDIEK 185

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
               +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  + +D + GI+  L+  A+++
Sbjct: 186 ---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSIDGIYDTLKTCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L ++
Sbjct: 303 PWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLPEV 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EFE  YE YER+  RG       I A  LW  +L    ETG P++ +KD CN ++ Q
Sbjct: 363 YGDEFEALYEKYEREG-RGR----STIKAQKLWYAILEAQTETGTPFMLYKDACNKKTNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629
           +++G++ SSNLC EI   SS EE AVCNL SI L +   ++     +++DKL    +T  
Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEVTKTVT 477

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             L+ +ID N + + +A++SN  +R I LG+ G   A   L +P+ S EA E+  +  E 
Sbjct: 478 GNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFET 537

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ AS+ELAQ+ G Y S++GS   QG+   D   L      EL         WD L
Sbjct: 538 IYHGAVEASIELAQKEGPYESYEGSPASQGLLQFD---LWDRKPTEL-------WDWDTL 587

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +
Sbjct: 588 KQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI    +I+ A+ R  +IDQ
Sbjct: 648 LVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQ 707

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T+
Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755


>gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 863

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 298/778 (38%), Positives = 424/778 (54%), Gaps = 58/778 (7%)

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           +++ K+V     + ++ G++  +L+     ++  L  K P+YA + AR  +  L +E   
Sbjct: 40  EITQKVV-----QGIHAGITTVELDNLAAETAAYLTTKHPDYAILAARIAISNLHKET-- 92

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK-------- 286
              KK   A  H++         +           H  M+D D+  +  D K        
Sbjct: 93  ---KKVFSAVVHDLHAWVNPKTGK-----------HSPMIDDDVYKIVMDNKDILDSAII 138

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           Y+RDFA+ Y G + L   Y L ING  +E PQ   MRVA+G+     +K    +E YNL+
Sbjct: 139 YDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMIMRVAVGIHGSNIDK---VIETYNLM 195

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
           S  +F  ++PTLFN+GT  PQ+SSCFL  + DD + GI+  L+  A ++K +GG+G    
Sbjct: 196 SERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIDGIYDTLKTCAQISKTAGGIGLHIH 255

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464
            +R  G++I GTNG S G+IP L+  + TA  V+QGG KR GA   YLE WH DV +F+D
Sbjct: 256 NIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQGGNKRPGAFAIYLEPWHADVFDFID 315

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           LRKN G +  R  D+  A WIPDLFMKRV  +  WTL  P E   L D+YG+EFE  YE+
Sbjct: 316 LRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMCPAECPGLADVYGEEFEKLYES 375

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           YER+      K  + I A  LW  +L    ETG P+I +KD  N +S Q+ +G + SSNL
Sbjct: 376 YERKG-----KGRKTIKAQKLWFAILEAQTETGVPYICYKDAANSKSNQKQLGTIKSSNL 430

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           CTEI   SS +E AVCNL S+ L A        +D+ KL    +   + LD VI  N + 
Sbjct: 431 CTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITKVVTKNLDTVITRNYYP 490

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +A+ SN  HR +GLG+ G   A   L +P+ SPEA E+  +  E I   A+ AS ELA
Sbjct: 491 VPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSPEARELNIQIFETIYHAALEASCELA 550

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E G Y S++GS   +G+   D  G +           T    W ELK ++   G+RNS 
Sbjct: 551 EEFGTYESYEGSPISKGILQYDMWGRVP----------TDLWDWTELKAKIAQHGVRNSL 600

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ + I G ++  +P    LY +  +SGDF VV  +L+ +L   DLWD+ M  
Sbjct: 601 LVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLWDDNMKQ 660

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            +    GSI +I  IPDDLKKI+ T +EI    +I+ A+ R  +IDQ+QSLN++L  PS 
Sbjct: 661 LIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIHLSNPSF 720

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTDPNSS 934
            +L  ++   W  GLKT  YYLR+R +      +V+ STLK     LN+     P  S
Sbjct: 721 PQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTVDASTLKTAKS-LNSSAKPSPTPS 777


>gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 833

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/765 (36%), Positives = 435/765 (56%), Gaps = 47/765 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + +   ++  +    +Y G++  +L+      S T+  K P+YA + AR 
Sbjct: 41  IKKLCYGLNMEHIEPILISQKVIAGLYQGVTTVELDNLAAEISATMTTKHPDYATLAARI 100

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y+     T+     + P+              +H+ ++  
Sbjct: 101 AVSNLHKETKKVFSDVIDDLYQWINPNTNKHSPMISPK--------------VHQ-IIQA 145

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+   + +  
Sbjct: 146 NSQRLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIHEDDIDA- 204

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAK 395
             A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+E A+++K
Sbjct: 205 --AIETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLKECAIISK 262

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 263 SAGGIGLNVHCIRASGTYIAGTNGYSNGLLPMLRVFNNTARYVDQGGNKRPGAFAVYLEP 322

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +FLD +KNTG +  R  D+  A WIPDLFMKR+  +  W+L  P E   L DL+
Sbjct: 323 WHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMCPHECPGLADLW 382

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  YE YE Q      K  R+I A  LW  ++    ETG P++ +KD CN +S QQ
Sbjct: 383 GDEFEKLYEKYEAQG-----KHKRRIKAQQLWYAIIESQIETGTPFMVYKDACNRKSNQQ 437

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632
           ++G +  SNLCTEI   SS +ET+VCNL SI  N   + A  +FD+ KLA   +     L
Sbjct: 438 NLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLAEVTKVVTVNL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID N + +  A+KSN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I +
Sbjct: 498 NKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLLNKKIFETIYY 557

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ +S +LA++ G Y +++GS   +G+   D   +            T    W+ LK R
Sbjct: 558 AALESSCDLAKQFGPYETYQGSPASKGILQYDMWNV----------QPTDLWDWESLKCR 607

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           ++  G+RNS  +A  PTA+ A I G ++S++    N+Y +  +SG+F +VN  L+ +L +
Sbjct: 608 IEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIVNHHLMKDLVE 667

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LWDE++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 668 LGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGAFIDQSQS 727

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T+
Sbjct: 728 LNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTV 772


>gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit
           [Neospora caninum Liverpool]
          Length = 886

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 297/796 (37%), Positives = 450/796 (56%), Gaps = 54/796 (6%)

Query: 166 VEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +E+   GL  +     +++   N MY G+  S+L+     +S  +    P+++K+ AR  
Sbjct: 82  IEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAAQTSAYMAASHPDFSKLAARIA 141

Query: 225 LEKLRREV----LTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF--- 276
           ++ L +      LT +                 E    Y+++ G +A+L+   + +F   
Sbjct: 142 IDNLHKNTTDNFLTVI-----------------EQLHGYVDKLGREAKLVSTEVYEFVKA 184

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MRVA G+     E  
Sbjct: 185 NEKALNEALNYSRDFEYDYFGFKTLERSYLLKIHDRIVERPQHMLMRVACGIHCGNVE-- 242

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            RAVE Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+ +D + GIF  L++ A+++K
Sbjct: 243 -RAVETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDGIFSTLKQCALISK 301

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG KRKG++  YLE 
Sbjct: 302 TAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGGGKRKGSLAIYLEP 361

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL  P+E   L +++
Sbjct: 362 WHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMCPNECPGLTEVW 421

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+  YE YER+  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 422 GEEFKELYERYEREG-RGR----KTIPAQHLWFAILQAQIETGTPYMLYKDACNRKSNQK 476

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRV 631
           ++G +  SNLCTE+   +S +E AVCNL S++L   F + +   FDY+ L   ++   R 
Sbjct: 477 NLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSL-PKFVDRETRTFDYEHLKKIVKVMTRN 535

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + + +AK SN  HR +GLG+ G   A  LL  P+ SPEA  +     E I 
Sbjct: 536 LNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARLLNRNIFECIY 595

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           + A+ AS ELA E G Y++++GS   QG+   D  G+            +    W  L++
Sbjct: 596 YAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTPS---------SGLCDWSALRE 646

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L 
Sbjct: 647 KIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLL 706

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +RDLW E +   L  H+G + N++ IPDDLK ++ T +EI    +++ A  R  +IDQ+ 
Sbjct: 707 ERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRSPYIDQSH 766

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T   VD +L       
Sbjct: 767 SLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT---VDSQLAMSAKAK 823

Query: 931 PNSSTHSLGIPSSCTS 946
            + ST S G+ ++ TS
Sbjct: 824 LSGSTFS-GVLTTTTS 838


>gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           mustelae 12198]
 gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           mustelae 12198]
          Length = 789

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 305/831 (36%), Positives = 444/831 (53%), Gaps = 117/831 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G +   +  ++      A   L+DVS   +  ++     D ++  +++  LI 
Sbjct: 2   ITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++   I+ + PN+  V AR  L  L  +V   T Y+  +            EYF +  +E
Sbjct: 62  TAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTGYRSLR------------EYFEKGEQE 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFF 321
           G   + L E    FDL +L   +K ERD  F +LG++ LYDRY L    ++ IE+PQ  F
Sbjct: 110 GKIVKGLKEK---FDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A++FY+++S F  + +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E A+L+KY GG+G D++ VRGLG+ I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH DV+EF+DLRKN+G++RRRTHD+  A WI DLFMKRV +N  WTL
Sbjct: 287 GTRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +   L +LYG+EFE  Y  +E++ D     +   I A  LW+K+LT  FETG P++
Sbjct: 347 FDPYQCGILTELYGEEFEEKYLEFEKRQD----IIKEHIHAKELWKKILTNYFETGMPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCT-------------EITLNSSSEE------------ 596
            FKD  N  +P  H G++ SSNLCT             E+    SS++            
Sbjct: 403 CFKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDA 462

Query: 597 -------------------------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
                                          TAVCNL SINL     + + D D++   +
Sbjct: 463 GIEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSR--IHTKEDIDRI---V 517

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVI++N +   K K +N  +RAIGLG+MG    L    I + S E  E  D 
Sbjct: 518 PIAIRMLDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDM 577

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            ME IS++AI AS  LA E+G Y  F+GS W +G+FPID     A    +          
Sbjct: 578 IMEAISYNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYN 637

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   
Sbjct: 638 WNFLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPN 697

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                          N+E  P      +  A+++D   +I++A+ RQK
Sbjct: 698 L--------------------------NLETFP-----YYTRAYDLDQKQIIKAAAIRQK 726

Query: 866 WIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           W+DQ QS N ++      S K L  IY  AW +GLK+TYYLRS S  + E+
Sbjct: 727 WMDQGQSTNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSESPEAREE 777


>gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa]
 gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/764 (36%), Positives = 429/764 (56%), Gaps = 57/764 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ + L+     ++ ++    P+YA + AR  + +L        +K 
Sbjct: 38  LVAQKVCAGVYRGVTTTQLDELAAETAASMTANHPDYALLAARISVSRL--------HKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y          G KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIELMYNNL---NKGSGQKAPLIADDVYEIIMKNAERLDSEILYDRDFEYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L ++G  +E PQ   MRVA+G+   + E    A + Y+L+S   F  +TP
Sbjct: 147 GFKTLERSYLLKVDGKIVERPQHLLMRVAVGIHKDDIES---ATKTYHLMSQSWFTHATP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +   G++I 
Sbjct: 204 TLFNAGTAQPQLSSCFLLCMKDDSIEGIYDTLKECAVISKLAGGIGIAVHNIHATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V N+TA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM+RV  +  W+LF P E   L D +G+EFE  Y  YER+ DR + 
Sbjct: 324 RARDLFLALWIPDLFMERVRGDDKWSLFCPSEAPGLADCWGQEFEKLYTQYERE-DRAK- 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              + ISA  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTE+   +S 
Sbjct: 382 ---KIISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSP 438

Query: 595 EETAVCNLGSINLLAHFA---------------------NNQFDYDKLASTIRTAVRVLD 633
            ETAVCNL S+  L  F                      N  FD++KLA    T    L+
Sbjct: 439 TETAVCNLASV-ALPRFVMERGVPAESQSSKMVGSRESKNRYFDFEKLAEVTTTITANLN 497

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +ID+N + +E A++SN  HR IG+G+ G      LL +P+ S EA  +  +  E I +H
Sbjct: 498 KIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSSEAKRLNKDIFETIYYH 557

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ +S ELA + G Y ++ GS   +G+  +D  G+            + R  WD L++ +
Sbjct: 558 ALRSSSELAAKDGPYETYCGSPVSKGILQMDMWGVTP----------SDRWDWDALREMI 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V+N  L+N+L + 
Sbjct: 608 SKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEM 667

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW   + + +    GS+  I  IP+ LK I+ T +EI    L++ A+ R  +IDQ+QSL
Sbjct: 668 GLWSPVLKNKIINESGSVSKIPEIPEQLKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSL 727

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++++P   KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 728 NIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 771


>gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS]
          Length = 771

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAIIAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 YDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G      LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS]
          Length = 893

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 38  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 97

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      YI           S   +++V    
Sbjct: 98  AVSNL--------HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHS 144

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  ++ EK   
Sbjct: 145 AELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK--- 201

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +
Sbjct: 202 AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 261

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 262 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 321

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG 
Sbjct: 322 SDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 381

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 382 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 436

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   +S +E AVCNL S+ L  +      ++D+ KL    +  VR L+ 
Sbjct: 437 GTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNK 496

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 497 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAA 556

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ++A+  G Y +++GS   QG+   D   +            T    WD LK+ + 
Sbjct: 557 LTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTP----------TDLWDWDSLKRDIA 606

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 607 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 666

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 667 LWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLN 726

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 727 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 778


>gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|132611|sp|P12848|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus]
 gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR]
          Length = 771

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus]
          Length = 771

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   ++           ++   W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP----------SNLWNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 733

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 307/758 (40%), Positives = 417/758 (55%), Gaps = 106/758 (13%)

Query: 214 PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           PN++ V +R  L  L  +V   T Y+  +            EYF    E+G   R+L   
Sbjct: 17  PNWSFVASRLFLYDLYHKVSGFTGYRHLK------------EYFENAEEKG---RILKGF 61

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
              FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM +AM LA  
Sbjct: 62  KEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLAQN 121

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
           E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ GIF + +E A
Sbjct: 122 EQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEGIFDSYKEMA 181

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G RKGA+  Y
Sbjct: 182 LLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLGTRKGAIAVY 241

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF P E  DL 
Sbjct: 242 LEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYECKDLT 301

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ FKD  N  +
Sbjct: 302 ELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLAFKDNANRCN 357

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------NLLAHFANNQFDYDKLA 622
           P  H G++ SSNLCTEI  N++     +      GSI       L+   +N     +KL 
Sbjct: 358 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQLVTTDSNITKCANKLT 417

Query: 623 ST-------IRTAVRV-------LDNVIDINCHTI------------------------- 643
           ST       I  A +V       + N+  IN   I                         
Sbjct: 418 STDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNF 477

Query: 644 ---EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS+HAI  SV 
Sbjct: 478 YPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSVN 537

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L+++VK  GMRN
Sbjct: 538 LAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRN 596

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E      W+   
Sbjct: 597 GYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNAE-----TWN--- 648

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--D 878
                                   + +A++ID   LI++A+ RQKWIDQ QS+N++L  +
Sbjct: 649 -----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIE 685

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
             SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 686 NASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 723


>gi|132610|sp|P20503|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|56404829|sp|Q76RD8|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen]
 gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus]
 gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus]
 gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus]
 gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus]
 gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara]
 gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68]
          Length = 771

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           gattii WM276]
 gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus gattii WM276]
          Length = 863

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 295/762 (38%), Positives = 420/762 (55%), Gaps = 59/762 (7%)

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           +++ K+V     + ++ G++  +L+     ++  L  K P+YA + AR  +  L +E   
Sbjct: 40  EITQKVV-----QGIHAGITTVELDNLAAETAAYLTTKHPDYAILAARIAISNLHKET-- 92

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---------LANDL 285
              KK   A  H++               V  +    S M  D VY         L + +
Sbjct: 93  ---KKVFSAVVHDLHAW------------VNPKTGKHSPMIDDEVYKVVMDNKDILDSAI 137

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            Y+RDFA+ Y G + L   Y L ING  +E PQ   MRVA+G+     +K    +E YNL
Sbjct: 138 IYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMIMRVAVGIHGANIDK---VIETYNL 194

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404
           +S  +F  ++PTLFN+GT  PQ+SSCFL  + DD + GI+  L+  A ++K +GG+G   
Sbjct: 195 MSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIDGIYDTLKTCAQISKTAGGIGLHI 254

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
             +R  G++I GTNG S G+IP L+  + TA  V+QGG KR GA   YLE WH DV +F+
Sbjct: 255 HNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQGGNKRPGAFAIYLEPWHADVFDFI 314

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DLRKN G +  R  D+  A WIPDLFMKRV  +  WTL  P E   L D+YG+EFE  YE
Sbjct: 315 DLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMCPAECPGLADVYGEEFEKLYE 374

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +YERQ      K  + I A  LW  +L    ETG P+I +KD  N +S Q+H+G + SSN
Sbjct: 375 SYERQG-----KGRKTIKAQKLWFAILEAQTETGVPYICYKDAANSKSNQKHLGTIKSSN 429

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           LCTEI   SS +E AVCNL S+ L A        +D+ KL    +   + LD VI  N +
Sbjct: 430 LCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITKVVTKNLDTVITRNYY 489

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A+ SN  HR +GLG+ G   A   L +P+ S EA E+  +  E I   A+ AS EL
Sbjct: 490 PVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSLEARELNIQIFETIYHAALEASCEL 549

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y S++GS   +G+   D  G +           T    W ELK ++   G+RNS
Sbjct: 550 AEEQGTYESYEGSPLSKGILQYDMWGRVP----------TDLWDWTELKAKIAQHGVRNS 599

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A  PTA+ + I G ++  +P    LY +  +SGDF VV  +L+ +L   DLWD+ M 
Sbjct: 600 LLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLWDDNMK 659

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             +    GSI +I  IPDDLKKI+ T +EI    +I+ A+ R  +IDQ+QSLN++L  PS
Sbjct: 660 QLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIHLSNPS 719

Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
             +L  ++   W  GLKT  YYLR+R +      +++ STLK
Sbjct: 720 FPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTIDASTLK 761


>gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 881

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/770 (37%), Positives = 433/770 (56%), Gaps = 55/770 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +  +    +Y G++  +L+     ++ T+    P+YA + AR 
Sbjct: 22  VQRLCYGLDPTHVEPVAITQKVIAGVYQGVTTIELDNLAAETAATMTTIHPDYAVLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L ++  T  Y    K  +             YI    K   LH  M+    +D++ 
Sbjct: 82  AVSNLHKQT-TKQYSAVSKILYE------------YINPETK---LHSPMISKETYDIIQ 125

Query: 281 -----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + Y+RDF + Y G + L   Y L +NG   E PQ   MRVA+G+  ++   
Sbjct: 126 EHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIMRVAIGIHGRDI-- 183

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
             R +E YNL+S  +F   +P LFN+GT  PQ+SSCFL  + +D + GI+  L+  A+++
Sbjct: 184 -PRVIETYNLMSQRYFTHGSPCLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKTCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ EF+++RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D 
Sbjct: 303 PWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADC 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG+EFE  Y  Y  +  RG     + I A  LW  +L    ETG P++ +KD CN +S Q
Sbjct: 363 YGEEFEELYNKYVAEG-RGR----QTIKAQKLWYSILECQTETGTPFMLYKDACNAKSNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629
           +++G++ SSNLC EI   SS EE AVCNL SI L +    ++    ++++KL    +   
Sbjct: 418 KNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWYNFEKLHDVTKVVT 477

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R L+ VID N + + +A+KSN  HR I LG+ G   A  +L I + S EA E+  +  E 
Sbjct: 478 RNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDSQEARELNIQIFET 537

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSRLPWD 747
           I   A+ AS+ELAQE GAY +++GS   QG+   D              NR  T    WD
Sbjct: 538 IYHAAVEASIELAQEEGAYETYQGSPASQGLLQFD------------LWNRKPTELWDWD 585

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           ELK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+
Sbjct: 586 ELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLL 645

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +I+ AS R  +I
Sbjct: 646 RDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHIIDMASDRAAFI 705

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           DQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 706 DQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|62288418|gb|AAX78464.1| unknown [synthetic construct]
          Length = 797

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 48  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 107

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 108 AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 154

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 155 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 211

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 212 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 271

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 272 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 331

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 332 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 391

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 392 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 446

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 447 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 506

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 507 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 566

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 567 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 616

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 617 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 676

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 677 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 735

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 736 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 776


>gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 838

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/745 (38%), Positives = 422/745 (56%), Gaps = 43/745 (5%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +G+S S L+  L  ++   + K P+Y  +  R          +T ++K   ++     + 
Sbjct: 54  EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRL--------AVTALHKTTTESVLDSFRV 105

Query: 251 LYPEYFCRYIEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
           L+      ++ +  K  A L+ E + D        L   + YERDF FEY G + L   Y
Sbjct: 106 LH-----EHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSY 160

Query: 306 FLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            L ++  R     +E PQ  F+RVA+G+  ++ E+ K   E Y+ +S   F  +TPTLFN
Sbjct: 161 LLRVDKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFN 217

Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +GT  PQ+SSCFL  + +D + GI+  L++ A+++K +GG+G     +R  G++I GTNG
Sbjct: 218 AGTPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNG 277

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P L+V N+TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D
Sbjct: 278 TSNGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARD 337

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +    WIPDLFM+RV  +  WTL  P+    L D YG+EF   YE YER+  RG     R
Sbjct: 338 LFYGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VR 392

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   +S +E A
Sbjct: 393 TIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVA 452

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL SI L     +  FDY  L    +   R L+ VID N + + +A+ SN  HR +G+
Sbjct: 453 VCNLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGI 512

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  LL +P+A PEA ++  +  E I F A+ AS ELA++ G Y +FKGS   +
Sbjct: 513 GVQGLADAFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASE 572

Query: 719 GVFPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G    D   L  E R    MN  S         WD LK+RV  +GMRNS  +A  PTA+ 
Sbjct: 573 GKLQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTAST 629

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G ++ I+P   N+YV+  +SG+F VVN  LV EL +  LW++ M   +   +GS+ 
Sbjct: 630 SQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVS 689

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+ IP+ +++++   +EI    LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +
Sbjct: 690 GIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYS 749

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916
           W  GLKT  YYLRS+ A    K TL
Sbjct: 750 WKKGLKTGMYYLRSQPAADAIKFTL 774


>gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 795

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/805 (35%), Positives = 450/805 (55%), Gaps = 53/805 (6%)

Query: 166 VEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  D    I ++ +    +Y G++ ++L++     S ++  + P+YA + AR 
Sbjct: 25  IQKLCYGLNLDYVDPIAITVKVINGLYSGVTTAELDSLAAEVSASMTTQHPDYAILAARI 84

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+T +Y             L   ++   I+        H   ++ 
Sbjct: 85  AVSNLHKETKVSFSDVMTDLYNMKNSFNQQPTPMLSDYHYDIIIK--------HADELNA 136

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            ++Y       ERD+ + Y G + L   Y L ING  +E PQ   MRVA+GL     +  
Sbjct: 137 AIIY-------ERDYNYNYFGFKTLERSYLLKINGKVVERPQHMLMRVAVGL---HGDDI 186

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNLLS  +F  ++PTLF++ TR PQLSSCFL T+ +D + GI+  L++ A+++K
Sbjct: 187 SSAIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKEDSIDGIYETLKQCALISK 246

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 247 SAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 306

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV QN  W L  P     L D +
Sbjct: 307 WHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQEWCLMCPKTCPGLSDCW 366

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF   Y +YE +         +K+ A +LW  ++    ETG P++ +KD CN +S QQ
Sbjct: 367 GEEFNKLYLSYEEKG-----LYVKKVKAQSLWYAIIESQVETGTPYMLYKDACNRKSNQQ 421

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632
           ++G +  SNLCTEI   SS EE AVCNL SI  N+     +  ++++KL    +   + L
Sbjct: 422 NLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVK-PDKTYNFEKLKDVTKIITKNL 480

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VIDI  + + +AK SN  HR IG+G+ G   A  L+ +P+ SPEA ++  +  E I +
Sbjct: 481 NKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSPEAQKLNIQIFETIYY 540

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA   G Y +++GS   +G+   D  G+            T+   WD LK +
Sbjct: 541 GALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTP----------TNLWDWDALKNK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L +
Sbjct: 591 IKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSGEFQVVNQHLLKDLTE 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW++ M + +  + GSI NI+ IP +LK ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 651 IGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVILKMAADRGAFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++ +P+  KL  ++  AW +GLKT  YYLR++ A    + T+     K+N   V + 
Sbjct: 711 LNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFTVDKT--KVNNANVKEV 768

Query: 932 NSSTHSLGIPS-SCT--SDTECEVC 953
           ++      + S SC+  +  +C +C
Sbjct: 769 STEKDKFNMESISCSLQNKDDCLMC 793


>gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
 gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
          Length = 838

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 287/743 (38%), Positives = 415/743 (55%), Gaps = 39/743 (5%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +G+S S L+  L  ++   + K P+Y  +  R  +  L +    +V    +    H  Q 
Sbjct: 54  EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQA 113

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                          A L+ E + D        L   + YERDF FEY G + L   Y L
Sbjct: 114 TRRH-----------APLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLL 162

Query: 308 HINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
            ++  R     +E PQ  F+RVA+G+  ++ E+ K   E Y+ +S   F  +TPTLFN+G
Sbjct: 163 RVDKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFNAG 219

Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQ+SSCFL  + +D + GI+  L++ A+++K +GG+G     +R  G++I GTNG S
Sbjct: 220 TPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTS 279

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+ 
Sbjct: 280 NGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLF 339

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
              WIPDLFM+RV  +  WTL  P+    L D YG+EF   YE YER+  RG     R I
Sbjct: 340 YGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VRTI 394

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVC
Sbjct: 395 QAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVC 454

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL SI L     +  FDY  L    +   R L+ VID N + + +A+ SN  HR +G+G+
Sbjct: 455 NLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGV 514

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+A PEA ++  +  E I F A+ AS ELA++ G Y +FKGS   +G 
Sbjct: 515 QGLADTFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGK 574

Query: 721 FPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              D   L  E R    MN  S         WD LK+RV  +GMRNS  +A  PTA+ + 
Sbjct: 575 LQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLVAPMPTASTSQ 631

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++ I+P   N+YV+  +SG+F VVN  LV EL +  LW++ M   +   +GS+  I
Sbjct: 632 ILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLQLWNDDMRRKIIALNGSVSGI 691

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           + IP+ +++++   +EI    LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W 
Sbjct: 692 KEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWK 751

Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916
            GLKT  YYLRS+ A    K TL
Sbjct: 752 KGLKTGMYYLRSQPAADAIKFTL 774


>gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
 gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 282/769 (36%), Positives = 435/769 (56%), Gaps = 53/769 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           ++  C GL    V +  V       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  IQRLCYGLDSDHVDAVAVTQRVISGVYHGVTTIELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL-- 281
            +  L        +K+  K      + LY      YI        LH  M+  +   +  
Sbjct: 82  AVSNL--------HKQTTKQFSQVAKILY-----EYINPKTD---LHSPMISEETYKIIC 125

Query: 282 --ANDLK----YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
             A++L     Y+RDF + Y G + L   Y L +NG   E PQ   MRVA+G+   + E 
Sbjct: 126 ENADELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIMRVAVGIHGNDIE- 184

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
             R +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++
Sbjct: 185 --RVIETYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFAIYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+
Sbjct: 303 PWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLADV 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EFE  YE YER+  RG       + A  LW  +L    ETG P++ +KD CN ++ Q
Sbjct: 363 YGDEFEALYEKYEREG-RGR----STVKAQKLWYSILEAQTETGTPFMLYKDACNKKTNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAV 629
           +++G++ SSNLC EI   SS EE AVCNL SI L +      +++ +++DKL    +   
Sbjct: 418 KNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASSSWYNFDKLHEVTKVVT 477

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R L+ +ID N + +E+A++SN  +R I LG+ G   A   L +P+ S EA E+  +  E 
Sbjct: 478 RNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLPFDSQEAKELNIQIFET 537

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDE 748
           I   A+ AS+ELAQE G Y +++GS   +G+   D           L   + S L  WD 
Sbjct: 538 IYHAAVEASIELAQEEGPYETYEGSPASKGLLQYD-----------LWDRKPSELWDWDT 586

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN  ++ 
Sbjct: 587 LKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPHMLK 646

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    +W++ M +++  ++GSI ++  +PD++K+++ T +EI    +I+ A+ R  +ID
Sbjct: 647 DLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQKHIIDMAADRAAFID 706

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           Q+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+++A +  + T+
Sbjct: 707 QSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755


>gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
 gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
          Length = 790

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 309/829 (37%), Positives = 433/829 (52%), Gaps = 119/829 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL++VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVEGLENVSLSELEVDAKIQFRDMITTEEIQQTLI- 59

Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             +T +EK     PN+  V AR  L           Y    K T         +YF R  
Sbjct: 60  --KTAVEKIDVDRPNWTFVAARLFL-----------YDLYHKVTGFSGYNSLEDYFARGE 106

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
             G   R++      +DL  L + L+ +RD  F YLG++ LYDRY +   +G+ IE+PQ 
Sbjct: 107 AAG---RIMLGLKEKYDLEDLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQ 163

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FM +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD+
Sbjct: 164 MFMAIAMFLAQNELDCQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDN 223

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLK+ ND AVAV+
Sbjct: 224 IEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVD 283

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR+     W
Sbjct: 284 QLGTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKW 343

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF P EVSDL DLYG EFE  YE YE  AD    K    I A  LW+K+LT  FETG P
Sbjct: 344 TLFDPAEVSDLSDLYGAEFEARYEQYE--ADDKISK--STILAKELWKKILTSYFETGMP 399

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------------S 594
           ++ FKD  N  +P  H G++ SSNLCTEI  N++                         +
Sbjct: 400 FLCFKDNANRINPNAHQGLIRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRT 459

Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAV------------------RVL--- 632
           +   V     I  L      + F  +K  S   TAV                  RV+   
Sbjct: 460 DAGIVKKAKKITALDTLGGKEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIA 519

Query: 633 ----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
               DNVID+N +   K K +N   RAIGLG+MG    L    + + S E  E+ D  ME
Sbjct: 520 VRMLDNVIDLNFYPHAKVKHTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIME 579

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR-----TSR 743
            +SF+AI AS  LA E+G Y  F GS W +G+FPID    LA    +  + R      S 
Sbjct: 580 NVSFNAIKASSNLAVEKGRYPDFAGSKWSEGIFPID----LANENAKALVKRGGLFEQSS 635

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV 
Sbjct: 636 CDWDGLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV- 694

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                         +  +     + +  A+E+D   L+++ + R
Sbjct: 695 ------------------------------VPNLSPKTWQAYVPAYELDQRLLVKAGAIR 724

Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QKWIDQ QSLN++  LD+ SG  L  IY  AW +GLK+TYYLRS S  S
Sbjct: 725 QKWIDQGQSLNIFMSLDKASGGYLSEIYTLAWQLGLKSTYYLRSESPDS 773


>gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 889

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/779 (36%), Positives = 437/779 (56%), Gaps = 57/779 (7%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231
           V    V  +  + +Y G++   L+     ++ T+    P+YA + AR  +  L +E    
Sbjct: 65  VDPSAVAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKN 124

Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
              V+  +Y      T+     +   Y+               +++  +   L + + Y+
Sbjct: 125 FSKVMHDLYHARDSVTNQHTPIINERYY---------------NIIKNNAEKLDSAIIYD 169

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF++ Y+G + L   Y L ING  +E PQ   MRVA+G+   ET+ +K A+E YN LS 
Sbjct: 170 RDFSYNYIGFKTLERSYLLKINGKIVERPQHMLMRVAVGI--HETDIDK-AIETYNYLSE 226

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F  ++PTLFN+ T + Q+SSCFL T+ +D + GIFG L++ A+++KY+GG+G +   +
Sbjct: 227 RYFTHASPTLFNACTNNQQMSSCFLLTLDNDSIKGIFGTLKKCALISKYAGGIGLNVHCI 286

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R            + G++  LK+ ND A+ V+QGG KR GA   YLE WH D+ +FL+LR
Sbjct: 287 RA--KSTEDNTDTTNGLVSVLKLYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELR 344

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +N GD   R  D+    WIPDLFM+RV  N  W+L  P E   L D++G EF+  Y  YE
Sbjct: 345 RNIGDGNMRARDLFYGLWIPDLFMERVYNNENWSLMCPHESPGLADVWGDEFKELYIRYE 404

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++   G  K  +++ A A+W  +L    ETG P++ +KD CN +S  QH+G +  SNLCT
Sbjct: 405 KE---GRYK--KQVEARAVWVAILRSQVETGTPYMLYKDHCNRKSNHQHIGTIKCSNLCT 459

Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E+   S   E AVCNL SI  N+  +  N  FD+DKL +  +   R LD VID+N + I 
Sbjct: 460 EVIQYSGPGEVAVCNLASIAVNMFVNTNNKTFDFDKLKTIAKVVTRNLDKVIDVNFYPIV 519

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + K SN  HR IG+G+ G   A  L+  P+ S EA E+  +  E + + A+ AS +LA E
Sbjct: 520 ETKTSNQKHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCKLAAE 579

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y +++GS   +G+   D   +            T+   WD+LK+++   G+RNS  +
Sbjct: 580 KGTYETYEGSPVSKGILQYDMWNVKP----------TNLWDWDKLKEKIAKHGVRNSLLI 629

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ A I G ++SI+P   N+YV+  +SG+F +VN  L+ +L  R LWDE M +++
Sbjct: 630 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEI 689

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
               GS+ NI+RIPDDLK ++ T +EI    ++E A+ R  +IDQ+QSLN+++ +P+ +K
Sbjct: 690 LASFGSVQNIDRIPDDLKVLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEK 749

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD-----GKLNAVPVTDPN 932
           L  ++   W  GLKT  YYLR++ A      +V+KS L+  D       +N  P+  PN
Sbjct: 750 LTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLRNNDSISSASTVNNTPIQSPN 808


>gi|28422346|gb|AAH46846.1| RRM1 protein [Xenopus laevis]
          Length = 760

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/757 (36%), Positives = 436/757 (57%), Gaps = 32/757 (4%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLAAETAATLTTKHPDYAILAARV 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L +E    ++    +  ++ +  L  ++      E +   L ++  ++  ++Y   
Sbjct: 82  AVSNLHKET-KKIFSDVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIY--- 137

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
               +RDF++ + G + L   Y L ING   E PQ   MRV++G+   + +    A+E Y
Sbjct: 138 ----DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKTDIDA---AIETY 190

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           NLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG+G 
Sbjct: 191 NLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIGV 250

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461
             + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH DV +
Sbjct: 251 AVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVFD 310

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E   L +++G +FE  
Sbjct: 311 FLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFEEL 370

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           YE YER+      +  + + A  +W  ++    ETG P++ +KD CN +S QQ++G +  
Sbjct: 371 YEKYEREG-----RTRKVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKC 425

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SNLCTEI   +S +E AVCNL S+ L  +      FD+ KLA   +  VR L+ +I+IN 
Sbjct: 426 SNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKIIEINF 485

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A  +  +  E I + A+ +S E
Sbjct: 486 YPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCE 545

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G Y +++G    +G+   D   +            T    W  LK+++   G+RN
Sbjct: 546 LAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIRN 595

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L ++ LW+E M
Sbjct: 596 SLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEEM 655

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +  ++GSI N+  IP DLK+++ T +EI    +I  A+ R  +IDQ+QSLN+++ EP
Sbjct: 656 KNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIHVAEP 715

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 716 NYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens]
          Length = 787

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/774 (36%), Positives = 435/774 (56%), Gaps = 41/774 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL  + +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIKKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             ++  +  + P+++ + AR  +  L +   +  + V +K  K  H + +   P      
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTK--KPAALIS- 117

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +E       H+  ++  +VY       +RDF ++Y G + L   Y + ++G+  E PQ 
Sbjct: 118 -DETYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + +D
Sbjct: 170 MIMRVALGI---HGDDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKED 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYIRGSNGTSNGIVPMLRVYNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    ETG
Sbjct: 347 SWSLMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL AH   +   
Sbjct: 402 TPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDA 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ KL  T     + L+ VID+N + +E+AK SN  HR IG+G+ G   AL  L  P
Sbjct: 462 ATFDFAKLKRTAYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S +A  I  +  E I F A+ AS++LA+E G Y S++GS   QG+F  D    L  V+
Sbjct: 522 YESDDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFD----LWNVK 577

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y + 
Sbjct: 578 P------SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L  R LW   + + +    GS+  +  IPDDLK ++ T +EI  
Sbjct: 632 VLAGEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
             +++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R
Sbjct: 692 KCVLDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 745


>gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
 gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
          Length = 799

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/763 (37%), Positives = 440/763 (57%), Gaps = 38/763 (4%)

Query: 166 VEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           V++ C GL  +   + V     + +YDG++ S+L+     ++ T+    P+YAK+ AR  
Sbjct: 22  VKKMCYGLNKIVDPVKVAMRVIEGLYDGVTTSELDNLAAETAATMTTAHPDYAKLAARI- 80

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYL 281
                   ++ ++K  +K+    M  LY   F        KA LL + + +    +   L
Sbjct: 81  -------AVSNLHKNTKKSFSETMDDLY---FYVNPRTEKKAPLLADDVYEIIKANAEKL 130

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            + + Y RDF ++Y G + L   Y L +NG   E PQ   MRV++G+   + ++   A+ 
Sbjct: 131 DSTIIYNRDFNYDYFGFKTLERSYLLKLNGQIAERPQHMLMRVSIGIHKNDIDE---AIA 187

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ +GG+
Sbjct: 188 TYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLQMQDDSIEGIYDTLKQTAKISQSAGGI 247

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     +R  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH D+
Sbjct: 248 GLSLHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYLEPWHADI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KN G +  R  D+  A WI DLFMKRV ++  WTL  P E   L+D YG+EFE
Sbjct: 308 FDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTLMCPHECPHLYDTYGEEFE 367

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y +YE  A +G     + I A  LW K+L    ETG P++ +KD  N ++ Q+++G +
Sbjct: 368 RLYTSYE-AAGKGR----KTIKARELWEKILESQIETGTPYMLYKDAVNRKTNQKNLGTI 422

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
            SSNLCTEI   ++ +E AVCNL SI L    +  +     F++ KL    +   R LD 
Sbjct: 423 RSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGEKYFNHKKLFDVTKKVTRNLDT 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + +++A+ SN  HR +GLG+ G       L +P+ S EA ++  +  E + + A
Sbjct: 483 VIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLPFTSDEAKKLNQDIFETMYYAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +++S+E+A+ +  YS+FKGS   +G F  +  G+     +EL+ N      WD+L+K V 
Sbjct: 543 VTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGV---NDNELSGN----WDWDKLRKNVM 595

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F VVN  L+ +L +  
Sbjct: 596 KYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVELG 655

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LWD  M   +   +GSI +IE IP +L++++ T +E+    +I+ A  R  +IDQ+QSLN
Sbjct: 656 LWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSMKDIIDMARHRGYFIDQSQSLN 715

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           L+L +P   KL  ++  AW  GLKT  YYLR++SA +  + T+
Sbjct: 716 LFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIQFTV 758


>gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger
           CBS 513.88]
 gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger]
          Length = 865

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/799 (36%), Positives = 442/799 (55%), Gaps = 53/799 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y       +     +  E +        +  + H   ++ 
Sbjct: 82  AVSNLHKQTKKQFSLVISDLYHYVNPKNNQPAPMISKETY--------EIIMKHADELNS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF + + G + L   Y L ING   E PQ   MRVA+G+   + EK 
Sbjct: 134 AIVY-------DRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGSDIEK- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + +D + GI+  L+  AM++K
Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+Y
Sbjct: 304 WHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+  YE YE++  RG     R I A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GDEFDALYEKYEKEG-RGR----RTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L      A  ++D+ KL   ++  VR L
Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQVLVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ S EA ++  +  E I  
Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750
             ++AS +LA+E G Y +++GS   QG+   D              +RT    WD   LK
Sbjct: 539 AGLTASSDLAKEFGTYETYEGSPVSQGILQYD------------MWDRTPTDLWDWAALK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 AKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+     K+    V 
Sbjct: 707 QSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVEDTNVA 766

Query: 930 DPNSS--THSLGIPSSCTS 946
             N++    ++G  SS  S
Sbjct: 767 RTNAAYKKRAVGAASSTYS 785


>gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
 gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
          Length = 886

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/772 (36%), Positives = 429/772 (55%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 44  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAARI 103

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L             K T  +   +  + F  Y+           S   ++ V    
Sbjct: 104 AVSNL------------HKQTKKQFSLVISDLF-HYVNPRNNKPAPMISKETYETVMKHA 150

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF + + G + L   Y L ING   E PQ   MRVA+G+   + EK   
Sbjct: 151 DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRVAVGIHGNDIEK--- 207

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E Y+L+S  +F  ++PTLF++GT  PQL+SCFL  + +D + GI+  L+  AM++K +
Sbjct: 208 AIETYHLMSQKYFTHASPTLFSAGTPQPQLASCFLVDMKEDSIEGIYDTLKTCAMISKNA 267

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 268 GGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 327

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+YG 
Sbjct: 328 SDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGD 387

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE YE++  RG     R + A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 388 EFDALYEKYEKEG-RGR----RTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 442

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+ KL   ++  VR L+ 
Sbjct: 443 GTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGKLHEVVQVLVRNLNK 502

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + + +A+KSN  HR I LG+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 503 IIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGA 562

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS +LA+E G Y +++GS   QG+   D                T    WD LK ++ 
Sbjct: 563 LTASSDLAKELGPYETYEGSPVSQGILQYDM----------WDRTPTDLWDWDALKAKIA 612

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 613 QTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 672

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 673 LWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLN 732

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W MGLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 733 IHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 784


>gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 779

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 282/784 (35%), Positives = 444/784 (56%), Gaps = 52/784 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V   ++  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPCLITQKVINGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y    + T      +  E +          +++ E+   F
Sbjct: 82  AISNLHKETKKVFSEVVEDLYNMVSEKTRLRTPMISDETY----------KIVMENAEAF 131

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +     + + Y+RDF + + G + L   Y L ING  +E PQ   MRV++G+   + E  
Sbjct: 132 N-----SAIIYDRDFNYNFFGFKTLERSYLLKINGKVVERPQHMLMRVSVGIHGADVES- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
              +  YNL+S   F  ++PTLFNSGT  PQLSSCFL  + DD + GI+  L++ A+++K
Sbjct: 186 --VLNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKDDSIEGIYDTLKQCALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 SAGGIGVNIHCIRASGSYIAGTNGTSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV Q+  W+L  P E   LH++Y
Sbjct: 304 WHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWSLMCPHECPGLHEVY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G++FE  Y  YE     GE +  R++ A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 364 GEDFEKLYTKYE-----GEKRYRRQVQAQQLWYAILESQIETGTPYMLYKDACNSKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           ++G +  SNLCTE+   ++ +E AVCNL SI L        FD+ KL    +   + L+ 
Sbjct: 419 NLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVHEGSFDFQKLREVSQVITKNLNR 478

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + I +A+KSN +HR IG+G+ G      LL +P+   +A  +  +  E I + A
Sbjct: 479 IIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKARLLNKQIFETIYYGA 538

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS +LA+E G Y ++ G    QG+   D  G+            T    W  LK R+ 
Sbjct: 539 LEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTP----------TDMWDWAALKARIA 588

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L  R 
Sbjct: 589 QYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLTDRG 648

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW+E + + L  ++GS+  ++ IPDDLK+++ T +EI    +++ A+ R  ++DQ+QSLN
Sbjct: 649 LWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMAADRGAFVDQSQSLN 707

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGVDGKLNAVPV 928
           +++ +P+  KL  ++   W +GLKT  YYLR++ A S     V+K+ L+  + ++NAV  
Sbjct: 708 VHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKTALRKKE-QMNAVTC 766

Query: 929 TDPN 932
           +  N
Sbjct: 767 SLKN 770


>gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum]
          Length = 884

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/774 (35%), Positives = 431/774 (55%), Gaps = 54/774 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDSEHVDAATITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y             +  E +        +  + H S +D 
Sbjct: 82  AVSNLHKQTKKQFSQVISDLYHYVNPKNGRPASMISTETY--------ETVMRHASELDS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            ++Y       ++DF + Y G + L   Y L ING   E PQ   MRVA+G+  ++ +K 
Sbjct: 134 AIIY-------DKDFNYNYFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDVDK- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395
              +E YNL SS +F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+  AM++K
Sbjct: 186 --VIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGDSIDGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N TA  V+QGG KR GA   Y+E 
Sbjct: 244 TAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYVDQGGNKRPGAFAIYMEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +F+DLRKN G +  R  D+  A WIPDLFMKRV  NA W+LF P+E   L D++
Sbjct: 304 WHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWSLFCPNEAPGLADVW 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  Y  YE   D       + I A  LW  +L    ETG+P++ +KD CN +S QQ
Sbjct: 364 GEEFEALYNKYENTKDLAR----KTIKAQKLWYHILEAQTETGNPFMLYKDACNRKSNQQ 419

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L  +      ++D+ KL    +  ++ L
Sbjct: 420 NLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDFAKLHEVTKVVIKNL 479

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + + +A+KSN  HR +G+G+ G   A   L +P+ SP+A ++  +  E I  
Sbjct: 480 NKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQAKQLNIQIFETIYH 539

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA+ +G Y +++GS   +G    D   +            T    WDELK++
Sbjct: 540 AAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTP----------TELWDWDELKEK 589

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L  
Sbjct: 590 VKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVD 649

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW + M + +   +GSI NI  IPDD+K ++ T +EI    +IE       +IDQ+QS
Sbjct: 650 MGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIEVCG---AFIDQSQS 706

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           LN+++  P+  KL  ++   W +GLKT  YYLR+++A      +V++  LK  D
Sbjct: 707 LNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQFTVDQEALKVAD 760


>gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi]
 gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi]
          Length = 821

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 292/794 (36%), Positives = 440/794 (55%), Gaps = 41/794 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDG 192
           SKS  P   KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G
Sbjct: 4   SKSLKP--SKLYVIKRDGRQEEIHFDKITSRIQKLCYNLNMDFVDPVSITLKVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQ 249
           ++  +L+      + +L  +  +YA + AR  +  L +E   V + V++   K  + E  
Sbjct: 62  VTTQELDNLAAEIAASLTTQHADYALLAARIAVSNLHKETRKVFSDVFEDLYKHINKETN 121

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
                      E        H +++      L + + Y+RDF + Y G + L   Y L I
Sbjct: 122 -----------EPSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKI 170

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           N    E PQ   MRV++G+   + +    AVE YNLLS  +F  ++PTLF + T  PQ+S
Sbjct: 171 NHKIAERPQHMLMRVSIGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQMS 227

Query: 370 SCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL T V D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L
Sbjct: 228 SCFLLTMVSDSIEGIFKSVEQCAMISKAAGGIGLNVHCIRAKGTSICGTNGTSNGLVPML 287

Query: 429 KVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +V N+ A  V+QGG KR GA   YLE WH D+ EF+DL+KNTG +  R  ++  A WIPD
Sbjct: 288 RVFNNVARYVDQGGGKRPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPD 347

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  N  W+L  P +   L D++G +FE  Y  YE++      K  R I A  LW 
Sbjct: 348 LFMKRVEANEDWSLMCPHKCPGLQDVWGDDFEKLYVQYEKEG-----KANRVIKAQTLWF 402

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            ++    ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L
Sbjct: 403 AIIEAQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIAL 462

Query: 608 LAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                +++ +D+ KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ GF  A
Sbjct: 463 NMFVTSDKTYDFKKLKEVTKTVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADA 522

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L L+  PY S EA  +  +  E I F A+ AS ELAQ+ G Y ++ GS   +G+   D  
Sbjct: 523 LILMRHPYESEEAALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMW 582

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G             T    W+ LK  +K  G+RNS  +A  PTA+ A I G ++S +P  
Sbjct: 583 G----------KTPTDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYT 632

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP +++ ++ 
Sbjct: 633 SNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYK 692

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR+
Sbjct: 693 TVWEISVKTTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRT 752

Query: 906 R-SATSVEKSTLKG 918
           + +A +++ +  KG
Sbjct: 753 KPAANAIQFTVAKG 766


>gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus]
 gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus]
 gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus]
 gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 437/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG+D  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKCI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           curvus 525.92]
 gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           curvus 525.92]
          Length = 790

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 299/824 (36%), Positives = 443/824 (53%), Gaps = 109/824 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++     A +GL++V+   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-YIEE 262
           ++   I+   PN+  V AR  L  L                +H++         R Y+++
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFNGYNHLREYLQK 104

Query: 263 GVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           G KA R++      +DL  L   ++ ERD  F YLG++ LYDRY +   NG+ IE+PQ  
Sbjct: 105 GEKAGRIIAGLKEKYDLDDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQM 164

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 165 FMAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNI 224

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q
Sbjct: 225 EGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQ 284

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+
Sbjct: 285 LGTRKGAIAVYIEPWHMDVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWS 344

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P +VSDL DLYG+ FE  YE YE + +  +  V  K     LW+K+LT  FETG P+
Sbjct: 345 LFDPAQVSDLCDLYGENFERRYEQYENEENIQKNVVLAK----ELWKKILTSYFETGMPF 400

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + FKD  N  +P  H G++ SSNLCTEI  N++                    EE    +
Sbjct: 401 LCFKDNANKANPNDHEGIIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTID 460

Query: 602 LG------SINLLAHFANNQ-FDYDKLASTIRTA-------------------------V 629
            G       ++ L      Q F  +K +   +TA                         V
Sbjct: 461 SGITKKAKKLSALDSLGGRQIFIVEKESVEGKTAVCNLASVNLSKVNKKADIERVVPIAV 520

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +  +K K +N   R+IGLG+MG    L    + +   E   + D  ME 
Sbjct: 521 RMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMEN 580

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE-VRDELAMNRTSRLPWDE 748
           IS+ AI  S  LA E+G Y +F+GS W +GV PID+    A+ + +   +       W++
Sbjct: 581 ISYQAIYTSSNLAVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGGLFDEDTCDWEK 640

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+ +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG           
Sbjct: 641 LRAKVKTDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------- 689

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                      MI ++         +  +  D  + +  A+E+D   L+ +A+ RQKWID
Sbjct: 690 -----------MIPNV---------VPNLSPDTWQFYTPAYELDQRVLVRAAAVRQKWID 729

Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q QSLN++  LD+ SG  L  IY  AW +GLK+TYYLRS S  S
Sbjct: 730 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 773


>gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
 gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
          Length = 791

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 305/831 (36%), Positives = 447/831 (53%), Gaps = 122/831 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLI- 59

Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-Y 259
             +T +EK     PN+  V AR  L  L                +H++         R Y
Sbjct: 60  --KTAVEKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFSGYNHLRDY 101

Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317
           +++G KA R++      +DL  L + ++ ERD  F YLG++ LYDRY +   +G+ IE+P
Sbjct: 102 LQKGEKAGRIIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELP 161

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + P
Sbjct: 162 QQMFMAIAMFLAQNELDCQGWAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTP 221

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++ GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVA
Sbjct: 222 DNIEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVA 281

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA
Sbjct: 282 VDQLGTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENA 341

Query: 498 GWTLFSPDEVSDLHDLYGKEFE---IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            W+LF P EV+DL DLYG EFE   IAYEN E+            + A  LW+K+LT  F
Sbjct: 342 RWSLFDPAEVADLCDLYGDEFEARYIAYENDEKIQK-------NVVMAKELWKKILTSYF 394

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595
           E+G P++ FKD  N  +P  H G++ SSNLCTEI  N+                     E
Sbjct: 395 ESGMPFLCFKDNANKTNPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEE 454

Query: 596 ETAVCNLG------SINLLAHFANNQ-FDYDKLASTIRTAV------------------- 629
           E    + G       ++ L      Q F  +K +   +TAV                   
Sbjct: 455 EDVRVDSGIVKKAKKLSALDSIGGEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIER 514

Query: 630 ------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                 R+LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + 
Sbjct: 515 VVPIAVRMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALI 574

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRT 741
           D  ME ISF+AI AS  LA E+G Y  F+GS W +GV PID+    A+  + D   +   
Sbjct: 575 DSVMENISFNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE 634

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    
Sbjct: 635 NACDWSKLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG---- 690

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                             MI ++         +  +  +  + +  A+E+D   L+ + +
Sbjct: 691 ------------------MIPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGA 723

Query: 862 RRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            RQKWIDQ QSLN++  LD+ SG  L  IY  AW +GLK+TYYLRS S  S
Sbjct: 724 IRQKWIDQGQSLNIFMSLDKASGGYLSEIYMLAWELGLKSTYYLRSESPDS 774


>gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus]
 gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus]
          Length = 771

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G    ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHFPIISSITMDVVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYEREKRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan]
          Length = 771

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 436/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 877

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      YI           S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHS 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  ++ EK   
Sbjct: 129 AELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG 
Sbjct: 306 SDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   +S +E AVCNL S+ L  +      ++D+ KL    +  VR L+ 
Sbjct: 421 GTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A
Sbjct: 481 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAA 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS ++A+  G Y +++GS   QGV   D   +            T    WD LK+ + 
Sbjct: 541 LTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GSI +I  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans]
 gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans]
          Length = 879

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/767 (36%), Positives = 428/767 (55%), Gaps = 47/767 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V +  +       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPNHVDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L ++            T    Q +   +     + G+ + ++ + +  FD++    
Sbjct: 82  AISNLHKQT-----------TKQFSQVVSDLFHYVNPKNGIHSPMISQEV--FDIIQKHK 128

Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
           D     + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+     +   +
Sbjct: 129 DELNSAIVYDRDFQYNYFGFKTLERSYLLRINGEVAERPQHLIMRVAVGI---HGDNIPK 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
            +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + GI+  L+E AM++K +
Sbjct: 186 VIETYNLMSLKYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECAMISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +F+D+RKN G +  R  D+  A W+PDLFMKRV +N  WTLFSP E   L D+YG 
Sbjct: 306 SDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWTLFSPSEAPGLSDVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE Y  Q  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++
Sbjct: 366 EFEALYERY-VQEGRGR----KTIKAQKLWYAILEAQTETGTPFMLYKDACNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVR 630
           GV+ SSNLC EI   S+ +ETAVCNL S++L A    ++      +++DKL    +    
Sbjct: 421 GVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSEDGQTQWYNFDKLHEIAKVVTH 480

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VID N + +E A+ SN  HR + LG+ G   A  +L IP+ S EA E+  +  E I
Sbjct: 481 NLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMILRIPFDSQEAKELNIQIFETI 540

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+  S ELA E G Y +F+GS   QG+   D       + D+     T    W+ LK
Sbjct: 541 YHAALERSNELAVEHGPYETFEGSPASQGILQFD-------MWDK---KPTDLWDWETLK 590

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L
Sbjct: 591 AKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDL 650

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               +W++AM S +   +GSI N+  IP  LK ++ T +E+    +IE A+ R  +IDQ+
Sbjct: 651 VDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWELSQKTIIEMAADRACYIDQS 710

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 QSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757


>gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 776

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/739 (36%), Positives = 416/739 (56%), Gaps = 54/739 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R    G+KA L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKVMYNHFNER---SGLKAPLIADDVYNIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRVA+G+   + +     ++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS---VIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W++F P+E   L D +G+EFE  Y  YER+      
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGQWSVFCPNEAPGLADCWGEEFERLYTQYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD  N +S QQ++G + SSNLCTEI   +S 
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMVFKDTSNRKSNQQNLGTIKSSNLCTEIIEYTSP 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
            ETAVCNL SI L                         N  FD+DKLA         L+ 
Sbjct: 439 TETAVCNLASIALPRFVREKGVPMESHPSKVVGSRGSKNRYFDFDKLAEVTEVVTCNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + +E AK+SN  HR IG+G+ G   A  LL + + SPEA ++  E  E I +HA
Sbjct: 499 IIDVNYYPVENAKRSNFRHRPIGIGVQGLADAFILLGMAFDSPEAQQLNKEIFETIYYHA 558

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS E+A   G Y ++ GS   +G+   D  G+            +SR  W+ L++ + 
Sbjct: 559 LKASSEIAGRDGPYETYDGSPVSKGILQPDMWGVTP----------SSRWSWNALREMIF 608

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + Y DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 669 LWSPTLKNKIIYEDGSVQKIPEIPDDLKLIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLN 728

Query: 875 LYLDEPSGKKLDFIYRQAW 893
           +++D+P+  KL  ++  AW
Sbjct: 729 IHMDQPNFGKLTSLHFYAW 747


>gi|221125333|ref|XP_002156212.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 2 [Hydra magnipapillata]
          Length = 809

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 283/763 (37%), Positives = 431/763 (56%), Gaps = 40/763 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + +S   +  +  + MY G++  +L+T     + ++  K P+YA + AR 
Sbjct: 39  IKKLCFGLDMKYISPYAITWKVIRGMYPGITTVELDTLAAEVAASMTTKHPDYALLAARI 98

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYL 281
            +  L +E      KK           + PE    C  + E V  +++ ++    D   +
Sbjct: 99  AISNLHKET----KKKFSDTIADLYNYISPEINMNCPMVSEEV-YQIVQKNKERLDGAII 153

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           ++     RDF + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E
Sbjct: 154 SS-----RDFEYHYFGFKTLERSYLLKINGKTAERPQHMLMRVSVGI---HGEDLDAAIE 205

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGL 400
            YNL+S   F  ++PTLFNSGT  PQ+SSCFL  +  D + GIF  +++ A+++K++GG+
Sbjct: 206 TYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGI 265

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR G++  YLE WH D+
Sbjct: 266 GLHIHCIRSSGSYIAGTNGHSNGIIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADI 325

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KNTG + +R  D+    W+PDLFM+RV +   W+L  P E   L D YG+EFE
Sbjct: 326 IDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFE 385

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y+ YE +      +  ++I A  LW  +L    ETG P++ +KD CN +S Q+++G +
Sbjct: 386 ELYQKYESEG-----RYRKQIPAQKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTL 440

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
             SNLCTEI   +SS+E AVCNL SI++ +    N      +D+ KL    +   R L+ 
Sbjct: 441 KCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETTGVYDFKKLKYVTKVITRNLNK 500

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A
Sbjct: 501 VIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGA 560

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA++ G Y S++GS   +G+   D   +            T+   W ELK ++ 
Sbjct: 561 LEASCELAEKDGTYESYQGSPISKGILQYDMWNVTP----------TNLWNWAELKAKIA 610

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L   +
Sbjct: 611 LHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLN 670

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LWD+ M + L  H+GS+ NI+ IP D+K ++ TA+EI    LI  A+ R  +IDQ+QS N
Sbjct: 671 LWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFN 730

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++L EPS   L  I+   W  GLKT  YYLR++ A +  + T+
Sbjct: 731 VFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTV 773


>gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 748

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/746 (36%), Positives = 424/746 (56%), Gaps = 44/746 (5%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  S   DV+   +  + + ++YDG+   +++T        +I  +P+Y  +  R     
Sbjct: 27  EGLSETVDVTK--IAQQVFSSIYDGIKTPEIDTLSAEICIGMITSDPDYEILATRI---- 80

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
                 + + K+     H  M+ L+            KA ++   +++     + +D+K 
Sbjct: 81  ----TASNIQKRAANNFHIAMRKLH------------KAGIVTHEVLEVS-SKVKDDIKP 123

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           ERDF F Y GL+ L   Y   I+G  IE PQ  +MRVA+G+   + +     +E Y  LS
Sbjct: 124 ERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYLYMRVAIGIHGHDID---HVLETYEALS 180

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406
              F+ +TPTLFN+GT  PQ+SSCFL    +D + GI+  ++E A ++K++GG+G     
Sbjct: 181 KGLFIHATPTLFNAGTPRPQMSSCFLIANKEDSIDGIYDTVKECARISKWAGGIGLHVHD 240

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR   +HI GTNG S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ +FL++R
Sbjct: 241 VRANKSHIRGTNGTSDGIIPMLRVYNSTARYVNQAGRRKGSIAVYLEPWHADILDFLEIR 300

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            N GD+  R  D+ +A WIPDLFMKRV  +  W+LF PD+   L D+YGKEFE  YE YE
Sbjct: 301 LNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLFCPDQAKGLSDVYGKEFEDLYEKYE 360

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +    ++     + A  +W+ ++    ETG P++ +KD CN +S  +HVG + SSNLCT
Sbjct: 361 SEGIATKV-----VPASEIWKAIIKSQSETGTPYMLYKDACNEKSNHKHVGTIKSSNLCT 415

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   +  EETAVCNL SI L  +     N+F++++L    +   R L+ VID N +  E
Sbjct: 416 EILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEELHRVTKMVTRNLNKVIDKNFYPTE 475

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             K+SN  HR IG+G+ G      +L + + S E+ ++  +  E I   ++ +S ELA+ 
Sbjct: 476 NGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEM 535

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +FKGS + +G+   D        RD      + R  W+ ++K VK  G  NS  +
Sbjct: 536 YGPYETFKGSPFSKGILQFDMWD-----RDP---KFSGRYDWNAMRKLVKK-GTMNSLLL 586

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y++  ++G+F VVN  LVN+LK+R LW + M   +
Sbjct: 587 APMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLM 646

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              +GS+ NI  IPDDLK+++ T +E+    +I+ A+ R  +IDQ+QS+NL+++ P+  K
Sbjct: 647 VKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISK 706

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L  ++  AW  GLKT  YYLRS++ +
Sbjct: 707 LSSMHMYAWKTGLKTGMYYLRSKAKS 732


>gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
 gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
          Length = 884

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 280/772 (36%), Positives = 433/772 (56%), Gaps = 48/772 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+ +K     +  LY      Y+           S   +++V    
Sbjct: 82  AVSNL--------HKQTKKQFSSVIDDLY-----HYVNPKNNRPAPMISQKTYEIVMKHS 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   + EK   
Sbjct: 129 EELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDDIEK--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +
Sbjct: 186 AIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   Y+E WH
Sbjct: 246 GGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG 
Sbjct: 306 SDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++
Sbjct: 366 EFEALYEQYEKEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDN 634
           G + SSNLCTEI   ++ +E AVCNL S+ L  +      ++D+ KL    +  +R L+ 
Sbjct: 421 GTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLIRNLNK 480

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   +
Sbjct: 481 IIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNTQIFETIYHAS 540

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++AS +LA+  G Y +++GS   QG+   D   +            +    WD LKK + 
Sbjct: 541 LTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTP----------SDLWDWDSLKKEIA 590

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    
Sbjct: 591 KHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLG 650

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QSLN
Sbjct: 651 LWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLN 710

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           ++L EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 711 IHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y   + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG  R G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR+  A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750


>gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
 gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
          Length = 791

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 304/831 (36%), Positives = 447/831 (53%), Gaps = 122/831 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLI- 59

Query: 205 SSRTLIEK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-Y 259
             +T +EK     PN+  V AR  L  L                +H++         R Y
Sbjct: 60  --KTAVEKIDIDRPNWTFVAARLFLYDL----------------YHKVTGFSGYNHLRDY 101

Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317
           +++G KA R++      +DL  L + ++ ERD  F YLG++ LYDRY +   +G+ IE+P
Sbjct: 102 LQKGEKAGRVIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELP 161

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + P
Sbjct: 162 QHMFMAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTP 221

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++ GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVA
Sbjct: 222 DNIEGIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVA 281

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA
Sbjct: 282 VDQLGTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENA 341

Query: 498 GWTLFSPDEVSDLHDLYGKEFE---IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            W+LF P EV+DL DLYG EFE   IAYEN E+            + A  LW+K+LT  F
Sbjct: 342 RWSLFDPAEVADLCDLYGDEFEARYIAYENDEKIQK-------NVVMAKELWKKILTSYF 394

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595
           E+G P++ FKD  N  +P  H G++ SSNLCTEI  N+                     E
Sbjct: 395 ESGMPFLCFKDNANKANPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEE 454

Query: 596 ETAVCNLG------SINLLAHFANNQ-FDYDKLASTIRTAV------------------- 629
           E    + G       ++ L      Q F  +K +   +TAV                   
Sbjct: 455 EDVTVDSGITKKAKKLSALDSIDGKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIER 514

Query: 630 ------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                 R+LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + 
Sbjct: 515 VVPIAVRMLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALI 574

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRT 741
           D  ME IS++AI AS  LA E+G Y  F+GS W +GV PID+    A+  + D   +   
Sbjct: 575 DSVMENISYNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDE 634

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    
Sbjct: 635 NACDWSKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG---- 690

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                             MI ++         +  +  +  + +  A+E+D   L+ + +
Sbjct: 691 ------------------MIPNV---------VPNLSPETWQFYTPAYELDQRVLVRAGA 723

Query: 862 RRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            RQKWIDQ QSLN++  LD+ SG  L  IY  AW +GLK+TYYLRS S  S
Sbjct: 724 IRQKWIDQGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 774


>gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
          Length = 789

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 306/825 (37%), Positives = 438/825 (53%), Gaps = 111/825 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L        YKK      +       EYF R  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDL--------YKKVNGMNRYNH---LREYFERGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  +    IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G +I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+  D   +K    I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEK--DDSIVKEI--IDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLG 603
           FKD  N  +P  H G++ SSNLCTEI  N+                     EE  + + G
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGG 462

Query: 604 ------------SINLLAHFANNQFDYD--------------------KLASTIRTAVRV 631
                       SIN    F   +F  D                     LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN----RTSRLPWD 747
           + AI AS  LA E+G+Y  FKGS W +G+FPID   + +E    L +       S   WD
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPID---VASEKAKALTLRGGLFAQSSCDWD 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L 
Sbjct: 640 QLRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNLN 699

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E  Q                                +  A+E+D   L+++A+ R KWI
Sbjct: 700 LETWQ-------------------------------YYTPAYELDQKILVKAAAVRGKWI 728

Query: 868 DQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DQ QSLN++  LD+ SG  L+ IY  A  +G+K+TYYLRS S  S
Sbjct: 729 DQGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773


>gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 813

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 303/857 (35%), Positives = 452/857 (52%), Gaps = 130/857 (15%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + ++  DG     +  ++    + AC GL  V    +  +      DG++  +++  L
Sbjct: 3   PGITVIKRDGRREPLDISKIRKYTKAACEGLDGVDYSELELDAKLQFRDGITTEEIQDTL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+  +PN+  V AR  L  L   V           T +       EYF    E
Sbjct: 63  IKTAVDKIDIDKPNWNFVAARLFLYDLYHRV-----------TGYTGYNHLREYF----E 107

Query: 262 EGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
            G +A R+L      +DL  L + +K ERD  F YLG++ LYDRY +     + IE+PQ 
Sbjct: 108 RGERAGRILPGLKEKYDLDDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELPQQ 167

Query: 320 FFMRVAMGLALKET--------EKEK------------RAVEFYNLLSSFHFMCSTPTLF 359
            FM VAM LA  ET        +K+K             A +FY+++S F  M +TPTL 
Sbjct: 168 LFMGVAMFLAQNETNPNSIPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPTLS 227

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+ T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D++ +R LG+ I     
Sbjct: 228 NARTTRHQLSSCYVGSMNDNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNHKN 287

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GVIP+LK+ ND A+AV+Q G RKGA+  Y+E WH+D+ +FLDL+KN+G++RRR HD+
Sbjct: 288 AAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAHDL 347

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV ++  WTLF P E  DL +LYG+EFE  Y  YE + D  +    RK
Sbjct: 348 FPALWIPDLFMKRVEEDGLWTLFDPYETGDLTNLYGEEFEKKYIEYENREDITK----RK 403

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----------- 588
           + A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI           
Sbjct: 404 VKAKELWKKILLEYYETGNPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHYKV 463

Query: 589 --TLNSSSEE------TAVCNLGSINLLA--------HFANNQFDY-------------- 618
             T    SEE          +LG + ++         H+ N +  Y              
Sbjct: 464 KVTFEDGSEEYFNEDDDVKVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTAVC 523

Query: 619 -------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                        +K+A  +  A+R+LDNVID+N + + K K +N  +RAIGLG MG   
Sbjct: 524 NLASVNLSKVNTPEKIAEVVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQ 583

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    I + S E +++ DE  E IS+ AI  S ELA+E+GAY  F+GS W +G+ PID+
Sbjct: 584 LLAERQIFWGSDEHLKLIDEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPIDT 643

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
               A+   E  +    +  W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P 
Sbjct: 644 ANEEAKKLVERDLFSAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPV 702

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y+  + + N+SG   VV                               +  +  D    +
Sbjct: 703 YKRKWYEENLSGLIPVV-------------------------------VPNLSADTYMFY 731

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYL 903
             A+E+D   L+++A+ RQKWIDQ QSLN+++  D+ SG+ L+ IY   W +GLK+ YYL
Sbjct: 732 TPAYELDQRILVKAAAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFYYL 791

Query: 904 RSRSATSVEKSTLKGVD 920
           RS+S    E+   + V+
Sbjct: 792 RSQSPEVKEEVMDRSVE 808


>gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980]
 gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980 UF-70]
          Length = 910

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 273/747 (36%), Positives = 430/747 (57%), Gaps = 45/747 (6%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           + +  +  +    +Y G++  +L+     ++  +    P+YA + AR  +  L       
Sbjct: 34  IDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNL------- 86

Query: 236 VYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKARLLHESMMDFDLVYLANDLKYE 288
            +K+ +K   H ++ LY     +         +E  +  + HE  ++  +VY       +
Sbjct: 87  -HKQTKKQFSHVIRDLYQYTNPKNGKASPMISKETFECVMRHEEELNSAIVY-------D 138

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E    A+E YNL+S+
Sbjct: 139 RDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIMRVAVGIHGDDIES---AIETYNLMSN 195

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F  ++PTLF++GT   QLSSCFL  + +D + GI+  L+  AM++K +GG+G +   +
Sbjct: 196 KYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSIDGIYDTLKICAMISKNAGGIGLNIHRI 255

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA+I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH DV EFLDLR
Sbjct: 256 RATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADVFEFLDLR 315

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D+YG+EFE  YE+YE
Sbjct: 316 KNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMCPNECPGLADVYGEEFEALYESYE 375

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           + A +G     + I A  LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCT
Sbjct: 376 K-AGKGR----KTIKAQKLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSSNLCT 430

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   S+ +E A CNL SI L      N+  +D+ KL   ++  VR L+ +IDIN + ++
Sbjct: 431 EIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQVVVRNLNKIIDINYYPVQ 490

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A++SN  HR I +G+ G   A   L +P+ SPEA  +  +  E I   A+++SVE+A+E
Sbjct: 491 EARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALTSSVEIAKE 550

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +++GS   +G    D  G+            +    WD LK+ +K  G+RNS  +
Sbjct: 551 LGPYETYQGSPVSKGELQYDMWGVTP----------SDLWDWDSLKQSIKQHGIRNSLLV 600

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW + M + +
Sbjct: 601 APMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRI 660

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
               GSI NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+QS+N+++ +P+  K
Sbjct: 661 IADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIHMKDPTMGK 720

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATS 910
           +  ++   W +GLKT  YYLR+ +A++
Sbjct: 721 ITSMHFAGWKLGLKTGMYYLRTMAASA 747


>gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis]
 gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis]
          Length = 821

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 296/800 (37%), Positives = 445/800 (55%), Gaps = 41/800 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L  D    + ++ +    +Y G++  +L+  
Sbjct: 11  KLFVVKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVSITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCR 258
               S  L     +YA + AR  +  L +E   V + V++   K  + E     P     
Sbjct: 71  AAEISAGLTCNHADYAILAARIAVSNLHKETKKVFSDVFEDLFKNINRETNTASP----- 125

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            + E       H +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ
Sbjct: 126 MVSE------FHYNIVKNNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQ 179

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  
Sbjct: 180 HMLMRVALGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMNS 236

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF ++++ A+++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  
Sbjct: 237 DSIEGIFKSVEQCALISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARY 296

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KR GA   YLE WH DV EFLDL++NTG +  R  D+  A WIPDLFMKRV  N
Sbjct: 297 VDQGGGKRPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEAN 356

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P +   L D++G++FE  Y  YE++      +  R + A ALW  ++    ET
Sbjct: 357 ESWSLMCPHKCPGLQDVWGEKFEELYVKYEQEG-----RANRTVEAQALWFAIIESQVET 411

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
           G+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L       + 
Sbjct: 412 GNPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTPEKT 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L+  PY 
Sbjct: 472 YDFKKLKEVTKTVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYE 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I F A+ AS ELA+E G Y +++GS   +G+   D       + D+
Sbjct: 532 SEEAGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYD-------MWDK 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +
Sbjct: 585 TP---TNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVL 641

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L + DLWD+ M + +    GSI +IE IP  ++ ++ T +EI    
Sbjct: 642 SGEFQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKS 701

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
            I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + 
Sbjct: 702 TIKMAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQF 761

Query: 915 TLKGVDGKLNAVPVTDPNSS 934
           T   VD K  A  + D N S
Sbjct: 762 T---VDKKQAASALNDLNGS 778


>gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis]
 gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis]
          Length = 797

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/757 (36%), Positives = 435/757 (57%), Gaps = 32/757 (4%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLAAETAATLTTKHPDYAILAARV 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L +E    ++    +  ++ +  L  ++      E +   L ++  ++  ++Y   
Sbjct: 82  AVSNLHKET-KKIFSDVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIY--- 137

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
               +RDF++ + G + L   Y L ING   E PQ   MRV++G+   + +    A+E Y
Sbjct: 138 ----DRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKTDIDA---AIETY 190

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           NLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG+G 
Sbjct: 191 NLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIGV 250

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461
             + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH DV +
Sbjct: 251 AVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVFD 310

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLDL+KNTG + +R  D+  A WIPDLFMKR   N  W+L  P E   L +++G +FE  
Sbjct: 311 FLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWSLMCPHECPGLEEVWGDKFEEL 370

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           YE YER+      +  + + A  +W  ++    ETG P++ +KD CN +S QQ++G +  
Sbjct: 371 YEKYEREG-----RTRKVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKC 425

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SNLCTEI   +S +E AVCNL S+ L  +      FD+ KLA   +  VR L+ +I+IN 
Sbjct: 426 SNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKIIEINF 485

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A  +  +  E I + A+ +S E
Sbjct: 486 YPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCE 545

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G Y +++G    +G+   D   +            T    W  LK+++   G+RN
Sbjct: 546 LAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIRN 595

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L ++ LW+E M
Sbjct: 596 SLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEEM 655

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +  ++GSI N+  IP DLK+++ T +EI    +I  A+ R  +IDQ+QSLN+++ EP
Sbjct: 656 KNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIHVAEP 715

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 716 NYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis]
          Length = 875

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 296/796 (37%), Positives = 440/796 (55%), Gaps = 55/796 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + + +  +       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  VSRLCYGLDAKHIDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L        +K+  K     +  LY         + V  R    S M  D VY   
Sbjct: 82  AISNL--------HKQTTKQFSQVVDDLY---------QWVNPRTGIHSPMISDEVYKIV 124

Query: 281 ------LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
                 L + + Y+RDF F Y G + L   Y L I+G   E PQ   MRVA+G+   + E
Sbjct: 125 MDNKDTLNSAIVYDRDFQFNYFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHGNDIE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              R +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + +D + GI+  L+E AM+
Sbjct: 185 ---RVLETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKEDSIEGIYDTLKECAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   Y+
Sbjct: 242 SKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMIRVFNNTARYVDQGGNKRPGAFALYI 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP+E   L D
Sbjct: 302 EPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWTLFSPNEAPGLPD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EFE  YE YER+  RG     + + A  LW  +L    ETG P++ +KD CN++S 
Sbjct: 362 AYGEEFEEMYERYEREG-RGR----KTVKAQKLWYAILEAQTETGTPFMLYKDACNLKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIR 626
           Q+++G + SSNLC EI   S   ETAVCNL SI L A            ++++KL S  +
Sbjct: 417 QKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDGKTQTYNFEKLHSIAK 476

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R L+ +ID N + +E A++SN  HR I LG+ G   A  +L +P+ S EA ++  E 
Sbjct: 477 VLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLRLPFDSEEAKKLNIEI 536

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E I   A  AS+ELA+E G Y +F GS   QG    D  G             T+   W
Sbjct: 537 FETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWG----------KTPTALWDW 586

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + LK+++K  GMRNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L
Sbjct: 587 NTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYL 646

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +++L    +WDEAM S +   +GSI N+  IP +LK ++ T +E+    +I+ A+ R  +
Sbjct: 647 LHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWELSQKHIIDMAADRAAY 706

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQ+QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  + T+     +  A
Sbjct: 707 IDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKSVAEQAA 766

Query: 926 VPVTDPNSSTHSLGIP 941
             V D +     + IP
Sbjct: 767 NSVVDLSKLNRPVYIP 782


>gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 279/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AISNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y   + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG  R G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGXXRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLKLKDVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA ++  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCKLAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEHLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR+  A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750


>gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 874

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/764 (36%), Positives = 424/764 (55%), Gaps = 41/764 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL    +    V       +Y+G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTIELDNLAAETAAYMTTVHPDYATLAARL 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L ++  T ++ +     +H +     ++     EE     + H+  ++  +VY   
Sbjct: 82  AISNLHKQT-TKLFSQVVDDLYHYINPENSKHAPLVSEEVYNIVMEHKDELNSAIVY--- 137

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
               +RDF F Y G + L   Y L + G   E PQ   MRVA+G+  ++ E    A+E Y
Sbjct: 138 ----DRDFQFNYFGFKTLERSYLLRMKGEVAERPQHLIMRVAIGIHGEDIEA---AIETY 190

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           NL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD L GIF  L+E AM++K +GG+G 
Sbjct: 191 NLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSLEGIFDTLKECAMISKTAGGIGL 250

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461
               +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA+  YLE WH D+ +
Sbjct: 251 HIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAMALYLEPWHADIFD 310

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP E   L ++YG+EFE  
Sbjct: 311 FIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWTLFSPSEAPGLEEVYGEEFEAL 370

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y  Y  +  RG     + I A  LW  +L    ETG P++ +KD CN +S  +++G + S
Sbjct: 371 YNRYVAEG-RGR----KTIKAQKLWYSILEAQTETGTPFMLYKDACNTKSNHKNLGTIKS 425

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNV 635
           SNLC EI   S+ +ETAVCNL SI L A         +  +++ KL    +   R L+ V
Sbjct: 426 SNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQTYNFKKLHEISKVVTRNLNKV 485

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + +E+A+ SN  HR I LG+ G      LL IP+ S EA E+     E +   A+
Sbjct: 486 IDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPFESKEAKELNTHIFETMYHAAL 545

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRV 753
            AS ELA++ G Y S+  S   QGV   D              NR     WD   LK+++
Sbjct: 546 EASCELAEKEGYYESYPNSPVSQGVLQYD------------MWNRKPSDLWDWATLKEQI 593

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L   
Sbjct: 594 KKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDLVDL 653

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +WDE+M   L   +GSI N+  IP +LK ++ T +EI    +I+ A+ R  +IDQ+ S+
Sbjct: 654 GIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQKTIIDMATDRSAFIDQSHSM 713

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           N+++  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 714 NIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757


>gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica]
 gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica]
          Length = 892

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 295/814 (36%), Positives = 445/814 (54%), Gaps = 55/814 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG   S    ++   ++  C GL    V    +  +    +Y+G+S  +L+  
Sbjct: 3   KLFVIKRDGRKESVQVDKITARIKRLCYGLDPDHVDPIQITLKIASGIYEGVSTIELDNL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  +    P+YA + AR  +  L ++       K Q +     Q +Y  Y   Y+ 
Sbjct: 63  AAETAAYMTTLHPDYAILAARIAVSNLHKQT------KKQFS-----QVVYDLY--HYVN 109

Query: 262 EGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              K      S   +D V    D     + Y+RDF + Y G + L   Y L +NG+  E 
Sbjct: 110 PRNKKHSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFKTLERAYLLRVNGAVAER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+     +   RA+E YN +S  +F  ++PTL+N+GT  PQ+SSCFL  +
Sbjct: 170 PQQMIMRVSVGI---HGDNIARAIETYNYMSQKYFTHASPTLYNAGTPQPQMSSCFLVNM 226

Query: 377 PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            DD + GI+  L+  A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA
Sbjct: 227 KDDSIDGIYDTLKTCALISKSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVYNNTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KR GA   YLE WH D+ EF +LRKN G +  R  D+  A WIPDLFM+RV 
Sbjct: 287 RYVDQGGNKRPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVE 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           QNA WTL  P+E   L D+YG EF+  YE YE++  RG     R I A  LW  +L    
Sbjct: 347 QNAEWTLMCPNECPGLDDVYGDEFKQLYEQYEKEG-RGR----RTIPAQKLWYHILDCQT 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
           E+G+P++ +KD CN +S Q+++G + SSNLC EI   SS +E AVCNL SI L       
Sbjct: 402 ESGNPFMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRD 461

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N+ +D+ KL    +  VR L+ +ID N + + +AKKSN  HR I LG+ G       L
Sbjct: 462 DTNSFYDFKKLHDIAKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMAL 521

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S EA ++  +  E I   A+ AS E+A E GAY +F+GS   +G    D   L  
Sbjct: 522 RLPFESEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFD---LWN 578

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               EL         WD+LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y
Sbjct: 579 VTPSEL-------WEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 631

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  ++G+F +VN +L+ +L +  LW+E M + +   +GS+ NI  IP ++K ++ T +E
Sbjct: 632 SRRVLAGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWE 691

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +IE A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+ +A 
Sbjct: 692 ISQKRIIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAA 751

Query: 910 -----SVEKSTLKGVDGK-----LNAVPVTDPNS 933
                ++++  LK +D       LN  P  + NS
Sbjct: 752 APIQFTIDQEALKTIDSSTAKAMLNKKPYQEINS 785


>gi|313683663|ref|YP_004061401.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156523|gb|ADR35201.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
          Length = 788

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 302/826 (36%), Positives = 447/826 (54%), Gaps = 120/826 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L I+  +G     +  +++     A  GL +VS   +  +      DG+  ++++  LI 
Sbjct: 2   LTIVKRNGRREPLDITKIQKYTSAAVKGLSNVSQSELEVDAQIQFRDGIHSNEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++   I+ + PN+  V +R  L  L   V   T Y   Q             YF R   E
Sbjct: 62  TAVDKIDIDSPNWTFVASRLFLYDLYHRVNGFTGYGSLQS------------YFERGEGE 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
           G   R+L      ++L  L   +  ERD  F YLG++ LYDRY +    G  IE+PQ  F
Sbjct: 110 G---RILLGLKEKYNLADLDAYIVPERDLEFNYLGVKTLYDRYLIKDRKGDPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E++++  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAVAMFLAQNESDRQGWAKKFYDMMSKFEVMMATPTLSNARTTRHQLSSCYIGSSPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E A+L+K+ GG+G DWT VR +G+ I G    + G +PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDAYKEMALLSKFGGGIGWDWTQVRAMGSFIDGHKNAAGGTVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH+DV++FLD++KN+G++RRR HD+  A WI D+FMKRV ++  WT+
Sbjct: 287 GTRKGAIAVYLEPWHMDVKDFLDVKKNSGEERRRAHDLFPALWINDMFMKRVVEDGIWTM 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +V +L +LYG  FE  Y   E + D    K   K  A  LW+K+LT  FETG P++
Sbjct: 347 FDPFDVKELSELYGDAFEKRY--LELEQDPSIPKEHSK--AKDLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------------- 592
            FKD  N  +P  H G++ SSNLCTEI  N+                             
Sbjct: 403 CFKDSANRSNPNDHFGIIRSSNLCTEIFQNTQPNHYLIKIKFEDGSFVTYEEDEIVKVDS 462

Query: 593 -----SSEETAVCNLG----------------------SINLLAHFANNQFDYDKLASTI 625
                +++ TA+ +LG                      S+NL     + + D D++   +
Sbjct: 463 GIEKPANKITALDSLGGRPIYIVEKEKVDGATAVCNLASVNL--SRVHTKEDIDRI---V 517

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R LDNVID+N + +EK K++N   RAIGLG+MG    L    I + S E  +  DE
Sbjct: 518 PVAIRALDNVIDLNFYPLEKVKRTNMRSRAIGLGVMGEAQMLAENRIVWGSQEHFDKVDE 577

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--TSR 743
            ME +S++AI AS +LA E+G+Y+ ++GS W +G+ P+D     AEV++ +         
Sbjct: 578 VMEAVSYNAIKASSDLAVEKGSYAEYQGSKWSRGILPMDHA--TAEVQNLVDRGGLFAPN 635

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WDEL++ +K  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV 
Sbjct: 636 YEWDELRETIKRQGMRNGYLMAIAPTSSISILTGTTQTIEPIYKRKWFEENLSGLIPVVA 695

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L       D W                            +  A+++D   L+++A+ R
Sbjct: 696 PKL-----SPDTW--------------------------SYYTPAYDLDQTILVKAAAIR 724

Query: 864 QKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QKWIDQ QSLN++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 725 QKWIDQGQSLNIFITLDKASGKYLNDIYMLAWKLGLKSTYYLRSQS 770


>gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 894

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/780 (36%), Positives = 435/780 (55%), Gaps = 52/780 (6%)

Query: 166 VEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y       +     +  + +         A + H+  +D 
Sbjct: 82  AVSNLHKQTKKQWSSVVSDLYHYVNPKNNKPSPMIAKDTY--------DAVMRHKEELDS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF ++Y G + L   Y L ++G   E PQ   MRVA+G+   + E  
Sbjct: 134 AIVY-------DRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIMRVAVGIWGDDVE-- 184

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + +D + GI+  L+  AM++K
Sbjct: 185 -RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S GV+P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 MAGGIGLNVHRIRATGSYIAGTNGTSNGVVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV +FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D Y
Sbjct: 304 WHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNECPGLADCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  YE YE Q  +G     + I A  LW  +L    ETG+P++ +KD  N +S Q+
Sbjct: 364 GEEFEALYEKYE-QMGKGR----KTIKAQKLWYAILEAQTETGNPFMLYKDAANRKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI    + +E AVCNL S+ L      N+  +D+ KL    +  VR L
Sbjct: 419 NLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDFQKLHEVTQVVVRNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + +++A+ SN  HR IGLG+ G   A   L +P+ SPEA ++  +  E I  
Sbjct: 479 NRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARDLNKKIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A++ SV+LA+E G Y +++GS   QG+   D   +            +    WD LK++
Sbjct: 539 AALTMSVQLAREEGPYETYEGSPVSQGILQYDMWNV----------KPSDLWDWDALKEQ 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L  
Sbjct: 589 IKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVD 648

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW +AM + +   +GSI NI  IP ++K ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 649 MGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQMAADRGAFIDQSQS 708

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV 926
           LN+++ +P+  K+  ++   W +GLKT  YYLR+++A      +V++  LK  D  +  V
Sbjct: 709 LNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADSAVGKV 768


>gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           concisus 13826]
 gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           concisus 13826]
          Length = 791

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 301/824 (36%), Positives = 442/824 (53%), Gaps = 108/824 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTNEAVLGLNNVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+   PN+  V AR  L  L  +V            +H            Y+ +G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLFDLYHKVTGF------NGYNH---------LKDYLAKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            K  R++      +DL  L   +K ERD  F YLG++ LYDRY +   +G  IE+PQ  F
Sbjct: 106 EKVGRIIPGLKEKYDLEDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDSQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+L
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +VSDL DLYG+EFE  Y  YE      +      I A  LW+K+LT  FETG P++
Sbjct: 346 FDPAQVSDLCDLYGEEFEKRYLEYENDESIQK----NTILAKELWKKILTSYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNL 602
            FKD  N  +P  H G++ SSNLCTEI  N++                    EE    + 
Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDS 461

Query: 603 G------SINLLAHFANNQ-FDYDKLASTIRTAV-------------------------R 630
           G       ++ L      Q F  +K +   +TAV                         R
Sbjct: 462 GITKKAKKLSALDSLKGKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L   ++ + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDE 748
           S++AI  S  LA E+G Y  F+GS W +G+ PID+    A+  + D+  +   +   WD+
Sbjct: 582 SYNAIYTSSNLAVEKGIYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDENVCDWDK 641

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG           
Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSG----------- 690

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                      MI ++         +  +  D  + +  A+E+D   LI++ + RQKWID
Sbjct: 691 -----------MIPNV---------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWID 730

Query: 869 QAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q QSLN++  LD+ SG  L  IY  AW +GLK+TYYLRS S  S
Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSESPDS 774


>gi|3914639|sp|O15909|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei]
          Length = 838

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/745 (38%), Positives = 421/745 (56%), Gaps = 43/745 (5%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +G+S S L+  L  ++   + K P+Y  +  R          +T ++K   ++     + 
Sbjct: 54  EGMSTSMLDELLAETAAYCVTKHPDYGLLAGRL--------AVTALHKTTTESVLDSFRV 105

Query: 251 LYPEYFCRYIEEGVK--ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
           L+      ++ +  K  A L+ E + D        L   + YERDF FEY G + L   Y
Sbjct: 106 LH-----EHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSY 160

Query: 306 FLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            L ++  R     +E PQ  F+RVA+G+  ++ E+ K   E Y+ +S   F  +TPTLFN
Sbjct: 161 LLRVHKGRGVMEVVERPQQMFLRVALGIHGEDLERVK---ETYDYMSQGFFTHATPTLFN 217

Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +GT  PQ+SSCFL  + +D + GI+  L++ A+++K +GG+G     +R  G++I GTNG
Sbjct: 218 AGTPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNG 277

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P L+V N+TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D
Sbjct: 278 TSNGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARD 337

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +    WIPDLFM+RV  +  WTL  P+    L D YG+EF   YE YER+  RG     R
Sbjct: 338 LFYGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREG-RG----VR 392

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   +S +E A
Sbjct: 393 TIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVA 452

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL SI L     +  FDY  L    +   R L+ VID N + + +A+ SN  HR +G+
Sbjct: 453 VCNLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGI 512

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   A  LL +P+A PEA ++  +  E I   A+ AS ELA++ G Y +FKGS   +
Sbjct: 513 GVQGLADAFALLSLPFAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASE 572

Query: 719 GVFPIDSIGLLAEVRDELAMNRTS------RLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G    D   L  E R    MN  S         WD LK+RV  +GMRNS  +A  PTA+ 
Sbjct: 573 GKLQFD---LWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTAST 629

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G ++ I+P   N+YV+  +SG+F VVN  LV EL +  LW++ M   +   +GS+ 
Sbjct: 630 SQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVS 689

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+ IP+ +++++   +EI    LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +
Sbjct: 690 GIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYS 749

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916
           W  GLKT  YYLRS+ A    K TL
Sbjct: 750 WKKGLKTGMYYLRSQPAADAIKFTL 774


>gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118]
 gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796]
 gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3]
          Length = 888

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/769 (36%), Positives = 429/769 (55%), Gaps = 52/769 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL  + + +  V       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280
            +  L        +K+  K     ++ LY     RY+    G  A ++ + +  +++V  
Sbjct: 82  AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126

Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+  ++ E  
Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+E A+++K
Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D Y
Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YE++  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628
           ++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++      +++ KL    +  
Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+ S EA  +  +  E
Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   ++ AS ELAQ+ G Y +F+GS   QG+   D       + D+          WD 
Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ 
Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI    +I  A+ R  +ID
Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           Q+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756


>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
 gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti]
 gi|108873131|gb|EAT37356.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
          Length = 844

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 297/829 (35%), Positives = 453/829 (54%), Gaps = 51/829 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           K+ +   DG     +  ++   +++ C GL  D    + ++ +    +Y G++  +L+  
Sbjct: 7   KMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYSGVTTQELDNL 66

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ T+  +  +YA + AR  +  L +E      KK      H++  +  E+  +   
Sbjct: 67  AAETAATMTTEHADYAILAARLAVSNLHKET-----KKHFSDVMHDLYMMENEHLKK--R 119

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
             + +   ++ +MD     L + + Y+RDF + Y G + L   Y L I G  +E PQ   
Sbjct: 120 TPMISEFHYKVIMDH-ADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHML 178

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNLLS  +F  ++PT+F + T  PQLSSCFL T+ DD +
Sbjct: 179 MRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDSI 235

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 236 EGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVDQ 295

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  W
Sbjct: 296 GGNKRPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            L  P E   L D +G+EFE  Y +YE      E +  RK+ A  LW  ++    ETG P
Sbjct: 356 CLMCPHECPGLSDTWGEEFEKLYTSYE-----AEGRYIRKVKAQDLWFAIIESQVETGVP 410

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
           ++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      ++ +D+
Sbjct: 411 YMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYDF 470

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    + A + L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S E
Sbjct: 471 QKLKEVAKIATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEE 530

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I + A+ AS ELA++ G Y ++ G    +GV   D              
Sbjct: 531 AQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWN----------K 580

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 581 EPTDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGE 640

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  L+ +L + DLWD+ M + +  ++GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 641 FQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIK 700

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVE 912
            A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A      +V+
Sbjct: 701 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVD 760

Query: 913 KS------------TLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCTSD 947
           K+            T+ G   K+N    T    N +  S   P   +SD
Sbjct: 761 KTRLNQSNRINNSDTVNGSPSKMNGATSTPSKMNGTATSSASPVKASSD 809


>gi|6320914|ref|NP_010993.1| Rnr1p [Saccharomyces cerevisiae S288c]
 gi|730514|sp|P21524|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1;
           AltName: Full=Ribonucleotide reductase large subunit 1
 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
           With Ligands And Subunit Peptides
 gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
           With Designed Adp Analog Compound
 gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae]
 gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291]
 gi|285811701|tpg|DAA07729.1| TPA: Rnr1p [Saccharomyces cerevisiae S288c]
          Length = 888

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/769 (36%), Positives = 429/769 (55%), Gaps = 52/769 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL  + + +  V       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280
            +  L        +K+  K     ++ LY     RY+    G  A ++ + +  +++V  
Sbjct: 82  AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126

Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+  ++ E  
Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+E A+++K
Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D Y
Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YE++  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628
           ++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++      +++ KL    +  
Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+ S EA  +  +  E
Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   ++ AS ELAQ+ G Y +F+GS   QG+   D       + D+          WD 
Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ 
Sbjct: 588 LRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI    +I  A+ R  +ID
Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           Q+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756


>gi|224418360|ref|ZP_03656366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           canadensis MIT 98-5491]
 gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
 gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
          Length = 790

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 300/820 (36%), Positives = 436/820 (53%), Gaps = 106/820 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI 
Sbjct: 2   LTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L   V      K  K                Y+E G
Sbjct: 62  TAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKSLK---------------EYLEIG 106

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            K   + + M + F+L  L   +  +RD  F YLG++ LYDRY L    G  IE+PQ  F
Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQNEKDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRR HD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE   D  +      I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------------C 600
            FKD  N  +P  H G++ SSNLCTEI  N+   +  +                     C
Sbjct: 403 CFKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDC 462

Query: 601 NL----------GSINLLAHFANNQFDYD------KLAS--------------TIRTAVR 630
            +           SIN    F   +   D       LAS               +  A+R
Sbjct: 463 GIIKSSNKITSTDSINGKKVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE ME I
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AISAS +LAQE+G Y+ F  S W +G+FPID     A+   +          WD L+
Sbjct: 583 SYNAISASCKLAQEKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYDWDSLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E 
Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE- 701

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                W+                           + +A+EID   +I++A+ RQKWIDQ 
Sbjct: 702 ----NWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           QS N++  LD+ SG+ L+ IY  AW +GLK+TYYLRS+S 
Sbjct: 732 QSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQSV 771


>gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
 gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
          Length = 793

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/819 (34%), Positives = 450/819 (54%), Gaps = 38/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSE-TYKNMYDGLSESDLETAL 202
           + ++  DG        ++   + + C GL  D    I +S+     +Y G++ S+L+   
Sbjct: 1   MYVVKRDGRREDVKFDKITARITKLCYGLNPDYVDAIKISQKVVAGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+++K+ AR  +  L        +K   K     ++  +      + + 
Sbjct: 61  AETAAYQSTQHPDFSKLAARIAVSNL--------HKNTNKVFSDNIEVFHKN---AHEKT 109

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + +  + +   L + + ++RDF ++Y G + L   Y   +NG  +E PQ 
Sbjct: 110 GAAAPLIADDVYEIVMQHKDELNSAIIHDRDFEYDYFGFKTLERGYLFRVNGKVVERPQQ 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             +RVA+G+   +      A+E Y L+S   F  +TPTLFN+GT  PQLSSCFL  + DD
Sbjct: 170 MILRVALGIHKSDITS---ALETYELMSQKFFTHATPTLFNAGTPRPQLSSCFLLAMQDD 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G     +R   ++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQCACISKWAGGIGISMHNIRATNSYIRGTNGSSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH DV EFLDLRKN G++  R  D+  A W+PDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L++ +G EFE  YE YE +      +  + I+A  LW  +L    ETG
Sbjct: 347 KWSLFCPNEAPGLYECWGDEFETLYEKYETEG-----RARKTINAQQLWFAILDAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLC E+   +S +E AVCNL S+ L     +  FD
Sbjct: 402 VPFMLYKDAANRKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVEDAVFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y KL   ++   R L+ VID+N + + +A+KSN  HR IG+G+ G   A  L++ P+ SP
Sbjct: 462 YRKLYEVVKVITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A E+     E I F A+  S+E+A E G Y +F+GS   +G+F  D  G+  +      
Sbjct: 522 QAQELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQ------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W  LK  V   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  ++G
Sbjct: 576 ---SGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT+VN  L+ EL +  +W   + + +    GS+  I+ IP+D+K+ + T +EI    ++
Sbjct: 633 EFTIVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVL 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + ++ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YY+R R      + T+
Sbjct: 693 DLSADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTV 752

Query: 917 --KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +G+D +      T    +  +  +  +   + EC VC
Sbjct: 753 DKQGIDLQRAKEEATKTAPTPAAETVTRAGDDEDECLVC 791


>gi|154340341|ref|XP_001566127.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 799

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/678 (40%), Positives = 393/678 (57%), Gaps = 33/678 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335
           L + + Y RD  FE+ G + L   Y L I   R EM     PQ  FMRVA+G+  ++   
Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGRDLNN 195

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
            +   E YNL+S   F  +TPTLFN+GT  PQ+SSCFL    DD + GI+  L+E A+++
Sbjct: 196 VR---ETYNLMSMGFFTHATPTLFNAGTPKPQMSSCFLVASKDDSIDGIYDTLKECAVIS 252

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KRKGA   YLE
Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV  FL L++NTG D +R  D+  A WIPDLFMKRV     WTL  P+    L D 
Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEGRWTLMDPNTCPGLSDC 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+ FE  YE YE +  RG     + I A  +W  +L    ETG P+I +KD CN +S Q
Sbjct: 373 HGEAFERLYERYEAEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631
           +++G +  SNLCTEI   +S EETAVCNL SI L         +F++  L +  +   R 
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKREFNHQLLYAVTKQITRN 487

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + +E A++SN  +R IGLG+ G      L+ +P+ S EA  +  E  E I 
Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFVSAEAQRVNAEIFETIY 547

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ +S+ELA+E G Y +FKGS   +G+   D          + A   + R  W  LK+
Sbjct: 548 FAAVESSMELAKEEGPYETFKGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V  +G+RNS  ++  PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L 
Sbjct: 600 KVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R LW+E M +++  ++GSI NI+ IPDDLK+++ T +EI    LI+ A  R ++IDQ+Q
Sbjct: 660 ARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK----LNAV 926
           SLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K T   VD K    +   
Sbjct: 720 SLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKFT---VDAKRLKEIQER 776

Query: 927 PVTDPNSSTHSLGIPSSC 944
             +    S+H +  P  C
Sbjct: 777 ESSQQTMSSHRVSQPEEC 794


>gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB]
          Length = 888

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/769 (36%), Positives = 428/769 (55%), Gaps = 52/769 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL  + + +  V       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280
            +  L        +K+  K     ++ LY     RY+    G  A ++ + +  +++V  
Sbjct: 82  AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126

Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+   + E  
Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGXDIEA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+E A+++K
Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D Y
Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YE++  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628
           ++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++      +++ KL    +  
Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+ S EA  +  +  E
Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   ++ AS ELAQ+ G Y +F+GS   QG+   D       + D+          WD 
Sbjct: 538 TIYXASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ 
Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI    +I  A+ R  +ID
Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           Q+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 756


>gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
 gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
          Length = 881

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/771 (36%), Positives = 423/771 (54%), Gaps = 50/771 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL +  V       +    +Y G++  +L+     ++  L  K P+YA + AR 
Sbjct: 23  IQKLCYGLNENFVDPIEFTQKVVAGVYHGVTTVELDNLAAETAAYLTTKHPDYAVLAARI 82

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y+            +  E +   + E  +A          
Sbjct: 83  AVSNLHKETKKNFSQVIKDLYEYVNPKNRRPAGMISQEIY-EIVRENAEA---------- 131

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y RDF+F + G + L   Y L +NG   E PQ   MRVA+G+  ++ +  
Sbjct: 132 ----LDSAIIYNRDFSFNFFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHGRDID-- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
            R VE YNL+S  +F  ++PTLFN+GT HPQLSSCFL  + DD + GI+  L+  AM++K
Sbjct: 186 -RVVETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKNCAMISK 244

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G     +R  G++I GTNG S G++P L+  + TA  V+QGG KR GA   Y+E 
Sbjct: 245 TAGGIGLSIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAIYIEP 304

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  N  W+LF P+E + L +++
Sbjct: 305 WHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFCPNEAAGLGEVH 364

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             EFE  YE YE++      +  + I A  LW  +L    ETG P++ +KD  N +S Q+
Sbjct: 365 SAEFEALYEKYEKEG-----RARKSIPAQKLWYAILEAQIETGGPFMVYKDHANSKSNQK 419

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           ++G + SSNLCTEI   SS EETAVCNL S+ L    +N ++D+ KL    +     L+ 
Sbjct: 420 NLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFISNGKYDFQKLHDVTKVVAYNLNR 479

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N + I +A+ SN  HR IG+G+ G       L +P+ SP A E+  +  E I   A
Sbjct: 480 IIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKELNIQIFETIYHGA 539

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA+  G Y ++ GS    G    D  G+            T    W  LK+++ 
Sbjct: 540 LEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTP----------TGLWDWTSLKEKIA 589

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +L+ EL    
Sbjct: 590 RTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDLG 649

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LWD+ M + +  H+GS+ NI  IPDD+K I+ T +EI    +++ A+ R  +I Q+QSLN
Sbjct: 650 LWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLN 709

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS-----VEKSTLKGV 919
           ++L  P+  +L  ++   W  GLKT  YYLR+R A S     V++S LK V
Sbjct: 710 VHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLLKEV 760


>gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
 gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
          Length = 921

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/767 (36%), Positives = 429/767 (55%), Gaps = 47/767 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    + +  +       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISKLCYGLDPSHIDAVKITQRIISGVYEGVTTVELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L ++            T    Q +   Y       GV + ++ + +  F++V    
Sbjct: 82  AVSNLHKQT-----------TKQFSQVISDLYHYVNPANGVHSPMISDEI--FNIVMTNK 128

Query: 284 D-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
           D     + Y+RDF F Y G + L   Y L ING   E PQ   MRV++G+     E  K 
Sbjct: 129 DELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQHLIMRVSLGI---HGEDIKS 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNL+S  +F+ ++PTLFN+GT HPQ++SCFL  + DD + GI+ +L+E AM++K +
Sbjct: 186 AIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDDSIEGIYDSLKECAMISKTA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP E   L D+YG+
Sbjct: 306 SDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWTLFSPSEAPGLADVYGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YE++  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++
Sbjct: 366 EFEKLYERYEQEG-RGR----KTIRAQKLWYAILEAQTETGTPFMLYKDACNEKSNQKNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANNQFDYDKLASTIRTAVR 630
           GV+ SSNLC EI   S  +ETA CNL SI L       A      + + KL    +   R
Sbjct: 421 GVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQWYSFAKLHEVAKAITR 480

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VID N + + +AK+SN  HR I LG+ G      +L +P+ SPEA  +  +  E I
Sbjct: 481 NLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPFESPEAKILNQQIFETI 540

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+  S ELA+  G YS+++GS   QG+   D    L E       N +    W+ L+
Sbjct: 541 YHGALEQSCELAKIHGTYSTYEGSPISQGLLQFD----LWE------KNPSELWDWEPLR 590

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L
Sbjct: 591 QGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLKDL 650

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               +WDE+M   +   +GSI NI  IP ++K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 651 VDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQRHVLDMAADRAVFIDQS 710

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            SLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 711 HSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 757


>gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 817

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 294/805 (36%), Positives = 438/805 (54%), Gaps = 61/805 (7%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           IV  +    ++ G++  +L+     ++ ++  K P+YA++ AR          ++ ++K 
Sbjct: 41  IVAQKVCMGVFAGVTTKELDELAAETAASMTSKHPDYAQLAARI--------AVSNLHKT 92

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    M  +Y     R    G  + LL + + +    +   L  ++ Y+RDF ++Y 
Sbjct: 93  TKKSFSETMTQMYEHVNER---NGKWSPLLADDVYEIIKANAERLDAEIVYDRDFEYDYF 149

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I+G  +E PQ   MRV++G+  ++ EK   AV+ Y++LS      ++P
Sbjct: 150 GYKTLERSYLLRIDGKVVERPQHLLMRVSIGIHKEDIEK---AVDTYHMLSERWMTHASP 206

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A ++K +GG+G     +R   ++I 
Sbjct: 207 TLFNAGTPRPQLSSCFLIAMKEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIR 266

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G+IP L+V NDTA  V+QGG KRKGA   Y+E WH D+ ++LDLRKN G +  
Sbjct: 267 GTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAIYIEPWHADIFDWLDLRKNHGKEEA 326

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    W  DLFMKRV  N  WTL  P+E   L D +G+EFE  Y+ YE      E 
Sbjct: 327 RARDLFYGLWTNDLFMKRVEANGDWTLMCPNECPGLADCWGEEFETLYQKYE-----AEG 381

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + I A  LW  +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S 
Sbjct: 382 KGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSP 441

Query: 595 EETAVCNLGSINLLAHFANNQ-----------------------FDYDKLASTIRTAVRV 631
           EETAVCNL SI L      N                        FD+DKL    R   R 
Sbjct: 442 EETAVCNLASIALPRFVIENNPSSPTGRTEVKKLVGSLKAKERYFDHDKLFEITRKVTRN 501

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ +ID+N + +E AK+SN  HR IGLG+ G      LL + + SPEA ++  E  E I 
Sbjct: 502 LNRIIDVNYYPVETAKRSNMRHRPIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIY 561

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A++ S  LA   G Y++++GS   +G+   D  GL         M    R  W  L+ 
Sbjct: 562 FAALTESNALAVVEGPYTTYEGSPVSKGILQPDMWGL-------TQMPGGDRHDWAGLRA 614

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L+++L 
Sbjct: 615 AIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLT 674

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +  LWD  + + L  ++GS+ ++E IP++LK I+ T +EI    L++ A+ R  +IDQ+Q
Sbjct: 675 ELGLWDPELKNSLIANNGSVADLE-IPENLKAIYKTVWEIKQRILVDMAADRGAFIDQSQ 733

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S N+++ +P+  KL  ++  AW  GLKT  YYLRSR+A    K T   VD K   V    
Sbjct: 734 SFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFT---VDVKQKQVTKMS 790

Query: 931 PNSSTHSLGIPSSC--TSDTECEVC 953
                  L     C  T+  +C +C
Sbjct: 791 EEEKEAYLAAKLQCSLTNKDDCVMC 815


>gi|221125331|ref|XP_002156185.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Hydra magnipapillata]
          Length = 821

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/775 (36%), Positives = 431/775 (55%), Gaps = 52/775 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + +S   +  +  + MY G++  +L+T     + ++  K P+YA + AR 
Sbjct: 39  IKKLCFGLDMKYISPYAITWKVIRGMYPGITTVELDTLAAEVAASMTTKHPDYALLAARI 98

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYL 281
            +  L +E      KK           + PE    C  + E V  +++ ++    D   +
Sbjct: 99  AISNLHKET----KKKFSDTIADLYNYISPEINMNCPMVSEEV-YQIVQKNKERLDGAII 153

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           ++     RDF + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E
Sbjct: 154 SS-----RDFEYHYFGFKTLERSYLLKINGKTAERPQHMLMRVSVGI---HGEDLDAAIE 205

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGL 400
            YNL+S   F  ++PTLFNSGT  PQ+SSCFL  +  D + GIF  +++ A+++K++GG+
Sbjct: 206 TYNLMSEKWFTHASPTLFNSGTPRPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGI 265

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G     +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR G++  YLE WH D+
Sbjct: 266 GLHIHCIRSSGSYIAGTNGHSNGIIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADI 325

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KNTG + +R  D+    W+PDLFM+RV +   W+L  P E   L D YG+EFE
Sbjct: 326 IDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFE 385

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y+ YE +      +  ++I A  LW  +L    ETG P++ +KD CN +S Q+++G +
Sbjct: 386 ELYQKYESEG-----RYRKQIPAQKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTL 440

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----------------FDYDKLA 622
             SNLCTEI   +SS+E AVCNL SI++ +    N                  +D+ KL 
Sbjct: 441 KCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETVTLPSGETKLVKTGVYDFKKLK 500

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ VID N + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA  +
Sbjct: 501 YVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMRFPFESDEASLL 560

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA++ G Y S++GS   +G+   D   +            T+
Sbjct: 561 NKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYDMWNVTP----------TN 610

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W ELK ++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VV
Sbjct: 611 LWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQVV 670

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+ +L   +LWD+ M + L  H+GS+ NI+ IP D+K ++ TA+EI    LI  A+ 
Sbjct: 671 NKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAAD 730

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           R  +IDQ+QS N++L EPS   L  I+   W  GLKT  YYLR++ A +  + T+
Sbjct: 731 RGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTV 785


>gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 788

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 297/818 (36%), Positives = 431/818 (52%), Gaps = 104/818 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G +   +  +++     A  GL +VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVQKRNGRIEPLDISKIQKYTSSAIKGLDNVSQSELEVDAKIQFRDKITTEEIQKTLIK 61

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+   PN+  V AR  L  L        Y K    T +     + EYF R  +EG
Sbjct: 62  TAVDKIDIDRPNWTFVAARLFLYDL--------YHKVSGFTGYGS---FKEYFERCEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
             A  L E    +DL  L   ++ ERD  F YLG++ L+DRY + +  G  IE+PQ  FM
Sbjct: 111 RIALGLKEK---YDLADLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            ++M LA  E   +  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AISMFLAQNELNSQDWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E ++L+K+ GG+G DW  VR +G  I G    + GVIPFLK+ ND AVAV+Q G
Sbjct: 228 IFDSYKEMSLLSKFGGGIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH+D+ +FLDL+KN+G++RRR H++  A WI DLFMKRV  NA WTLF
Sbjct: 288 TRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL ++YG+EFE  Y  YE   D    K +  I A  LW+K+LT  FE+G P++ 
Sbjct: 348 DPAQTPDLCEVYGEEFERRYSAYEH--DESVTKEY--ILAKELWKKILTSYFESGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------------------------ 592
           FKD  N  +P  H G++ SSNLCTEI  N+                              
Sbjct: 404 FKDSANKVNPNDHAGIIRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVDSG 463

Query: 593 -SSEETAVCNLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
            + E   +  L SI                    NL +   +     + +   +  A+R+
Sbjct: 464 ITKEAKKITALDSIDGKDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAIRM 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RA+GLG+MG    L    I + S E     DE ME IS
Sbjct: 524 LDNVIDLNFYPHAKVKHTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEAIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS  LA E+G Y  F GS W +G+FPID+    A+   +          W+ L++
Sbjct: 584 YNAILASSNLAIEKGVYPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLFGYMYDWESLRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 644 KVKNNGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL----- 698

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W                            +  A+E+D   L+++ + RQKWIDQ Q
Sbjct: 699 NPNTW--------------------------TFYTPAYELDQRILVKAGAIRQKWIDQGQ 732

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           SLN++  LD+ SGK L+ IY  AW +G+K+TYYLRS+S
Sbjct: 733 SLNIFITLDKASGKYLNDIYMLAWKLGIKSTYYLRSQS 770


>gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica]
 gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica]
          Length = 832

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 296/805 (36%), Positives = 443/805 (55%), Gaps = 72/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK---NMYDGLSESDLETA 201
           LK+   DG L      ++   +++ C  L D++    LS T K    +YDG++  +L+  
Sbjct: 4   LKVKKRDGRLEEVFFDKITSRIKKLCYNL-DMNILSPLSVTRKVIDGIYDGVTTVELDNL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRY 259
              ++  +    P+YA + AR  +  L                H E + L+ E     R 
Sbjct: 63  AAETAAQMSVNHPDYAILAARISVSNL----------------HKETKKLFTEVIEDLRN 106

Query: 260 IE--EGVKARLLHESMMDFDLVYLANDLK------YERDFAFEYLGLQILYDRYFLHING 311
           +E   G K  L+ E       + +AN  K      ++RD+ + Y G + L   Y + I+G
Sbjct: 107 VEGYNGKKKPLISEKTYK---IVVANKDKLNSAVIHDRDYEYNYFGFKTLERSYLMKIDG 163

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             IE PQ   MRV++G+  ++ +    A+E YN +S  +F  ++PTLFNSGT  PQ+SSC
Sbjct: 164 KTIERPQHMLMRVSVGIHGEDIDA---ALETYNFMSLKYFTHASPTLFNSGTPRPQMSSC 220

Query: 372 FLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           FL  + DD + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V
Sbjct: 221 FLVAMQDDSIEGIYDTLKTCALISKNAGGIGVNVHNIRARGSYIGGTNGHSNGLIPMLRV 280

Query: 431 ANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            N+TA  V+QGG KR GA   YLE WH D+ EFLD +KNTG +  R  D+  A WIPDLF
Sbjct: 281 YNNTARYVDQGGNKRPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLF 340

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  N  WTLF PDE   LH+ +G+EFE  +E YE++  RG+      I A ALW K+
Sbjct: 341 MKRVESNGDWTLFCPDEAPGLHECWGEEFEALFEKYEKEG-RGK----ETIKAQALWYKI 395

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    E G P++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL S++L A
Sbjct: 396 IEAQIEVGVPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPA 455

Query: 610 HFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
               N      +D+  L    +   R L+ VIDIN + +E+A+ SN  HR IG+G+ G  
Sbjct: 456 FIRKNDQGFSVYDFQDLYDKTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLA 515

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----------- 713
               +L + + S EA  +  +  E I F A+ AS ELA++ G Y SF+            
Sbjct: 516 DTFCMLKLAFESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNP 575

Query: 714 -SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S   QG F  D  G+            T    WD L+++V   G+RNS  ++  PTA+ 
Sbjct: 576 DSPMAQGKFQFDLWGVTP----------TDLWDWDSLREKVTRHGVRNSLLVSPMPTAST 625

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G ++SI+P   N+Y +  +SG+F VVN  L+ EL + + WD+ +   +   +GSI 
Sbjct: 626 AQILGNNESIEPFTNNIYTRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQ 685

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           N++ IP D+K+ + T +EI    +++ A+ R  +IDQ+QSLN+++ +P    L  ++   
Sbjct: 686 NLD-IPADIKERYRTVWEIKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTG 744

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL 916
           W MGLKT  YYLR++ A +  K T+
Sbjct: 745 WKMGLKTGMYYLRTKPAAAAIKFTV 769


>gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 863

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/761 (36%), Positives = 426/761 (55%), Gaps = 51/761 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + + +  +  +    +Y G+   +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHIDAAAITQKVISGVYQGVGTIELDNLAAETAAYMTVTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L ++       V++ +Y       +     +  E++        +  + H   ++ 
Sbjct: 82  AVSNLHKQTKKQFSMVISDLYHYVNPKNNKPAPMISKEHY--------EIVMKHAEELNS 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +VY       +RDF + + G + L   Y L ING+  E PQ   MRVA+G+  ++ EK 
Sbjct: 134 AIVY-------DRDFNYNFFGFKTLERSYLLRINGTVAERPQHLLMRVAVGIHGEDIEK- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAK 395
             A+E Y+L+S  +F  ++PTLFN+ T  PQL+SCFL  +  D + GI+  L+  AM++K
Sbjct: 186 --AIETYHLMSQKYFTHASPTLFNAATPQPQLASCFLVDMSADSIEGIYDTLKTCAMISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E   L D+Y
Sbjct: 304 WHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+  Y  YE Q  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+
Sbjct: 364 GEEFDALYAKYE-QEGRGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQK 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632
           ++G + SSNLCTEI   S+ +E AVCNL S+ L      A  ++D+ KL   ++  V  L
Sbjct: 419 NLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGEYDFGKLHEVVQVLVHNL 478

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ SPEA ++  +  E I  
Sbjct: 479 NKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPEARQLNIQIFETIYH 538

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750
            A++AS ++A++ G Y ++ GS   QG+   D              +RT    WD   LK
Sbjct: 539 GALTASSDIAKKLGPYETYPGSPVSQGILQYD------------MWDRTPTDLWDWASLK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 AKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A+ R  +IDQ+
Sbjct: 647 VDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAYIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++
Sbjct: 707 QSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASA 747


>gi|157871642|ref|XP_001684370.1| ribonucleoside-diphosphate reductase large chain [Leishmania major
           strain Friedlin]
 gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania major strain Friedlin]
          Length = 799

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 296/800 (37%), Positives = 436/800 (54%), Gaps = 63/800 (7%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           ++M+ E    GL D           +  YD L E   +TA  +S    + K P+Y ++  
Sbjct: 41  VDMLTENVTRGLTD-----------QIRYDKLDELVAQTA-AYS----VTKHPDYGRMGG 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDL 278
           R           T+++K+  ++     + L+       ++    A L+ +    +M    
Sbjct: 85  RL--------CTTSLHKQTNESLLETFRLLHSHV---TVQTNRPAPLIADDVWEVMKQHH 133

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKET 333
             L   + Y RD  FE+ G + L   Y L I   R EM     PQ  FMRVA+G+   + 
Sbjct: 134 AELQGMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL 193

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAM 392
              K   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL    +D + GI+  L+E A+
Sbjct: 194 ---KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAV 250

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAY 451
           ++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KRKGA   Y
Sbjct: 251 ISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVY 310

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV     WTL  P+    L 
Sbjct: 311 LEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLS 370

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           D YG+EFE  YE YE +  RG     + I A  +W  +L    ETG P+I +KD CN +S
Sbjct: 371 DCYGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKS 425

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAV 629
            Q+++G +  SNLCTEI   +SS+ETAVCNL SI L         + ++  L +  +   
Sbjct: 426 NQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEVEKRELNHQLLYTVTKQIT 485

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ S EA  +  E  E 
Sbjct: 486 RNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFET 545

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I F A+ +S+ELA+E G Y +F GS   +G+   D          + A   + R  W  L
Sbjct: 546 IYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMW--------KNARPNSGRWDWASL 597

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +
Sbjct: 598 KEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMD 657

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    LI+ A  R ++IDQ
Sbjct: 658 LIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQ 717

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK----LN 924
           +QSLNL+L  P+  ++  +   +W  GLKT  YYLR+++A    K T   VD K    + 
Sbjct: 718 SQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQ 774

Query: 925 AVPVTDPNSSTHSLGIPSSC 944
               +    S+H    P  C
Sbjct: 775 ERETSQQTMSSHRASQPEEC 794


>gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
 gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
          Length = 747

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/739 (37%), Positives = 417/739 (56%), Gaps = 45/739 (6%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           ++  S  V  +   ++YDG++  +++T        +I  +P+Y              E+L
Sbjct: 31  KNCDSSKVAQQVASSLYDGIAAQEIDTLSAEVCVGMITSDPDY--------------EIL 76

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
            T      +     +Q + P  F   +++  KA ++ E +     V + +D+  +RD+ F
Sbjct: 77  AT------RIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AVRVRDDIVTKRDYDF 129

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            Y GL+ L   Y   ++G  +E PQ  FMRV++G+     E     +E Y+ +S   F+ 
Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVSIGI---HGEDIPAVLETYDKMSQGMFIH 186

Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFN+GT  PQ+SSCFL     D + GI+G+L E A ++K++GG+G     VR   +
Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKGDSIDGIYGSLTECAQISKWAGGIGMHIHDVRANKS 246

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNG+S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ +FL+LR N GD+
Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMDFLELRLNQGDE 306

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  D+ +A WIPDLFMKRV +   W+LF PD+   L +  G+EFE  Y  YE +    
Sbjct: 307 EARCRDLFSALWIPDLFMKRVEEGGQWSLFCPDKAPGLSEAVGEEFEALYTKYEEEG--- 363

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +    + A  +W+ +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   +
Sbjct: 364 --RANATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIKSSNLCTEIIEYT 421

Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             +ET+VCNL SI  L  + N +   FDY+KL    +   + L+ VID N + +E A+KS
Sbjct: 422 DKDETSVCNLASI-ALPKYVNEETRSFDYEKLHEITKVVTKNLNRVIDRNFYPVETARKS 480

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IGLG+ G      L  + + S EA  +     E +   A+ AS ELA+  G Y 
Sbjct: 481 NMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYE 540

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+GS   QG+   D        + E  +N      WD LK+R++  G+RNS  MA  PT
Sbjct: 541 TFEGSPASQGILQFDMW------QGETKLN----YDWDALKERIREKGLRNSLLMAPMPT 590

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++  +P   N+Y++  ++G+F VVN  LV +LK+  LW + M   +    G
Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGG 650

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI NI  IPDD+K ++ T +EI    +I+ A+ R ++IDQ+QS+NL+++ P+  KL  ++
Sbjct: 651 SIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMH 710

Query: 890 RQAWLMGLKT-TYYLRSRS 907
             AW  GLKT  YYLRS++
Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729


>gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 790

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 298/820 (36%), Positives = 435/820 (53%), Gaps = 108/820 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  +G +   +  +++   +++  GL+ VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVVKRNGRIEPLDVTKIQKHTKDSVLGLEGVSQSELEVDAKLQFRDKITTQEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++   I+ + PN+  V AR  L  L   V     YK                    Y E+
Sbjct: 62  TAVDKIDIDCPNWTYVAARLFLYDLYHRVNGFNGYKS----------------LAEYFEK 105

Query: 263 GVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           G +  R++      F+L  L   +  ERD  F YLG++ LYDRY L    G+ IE+PQ  
Sbjct: 106 GERENRIIGGLKEKFNLDRLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD +
Sbjct: 166 FMGIAMFLAQNEKDPNYWAEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W+
Sbjct: 286 LGTRKGAISVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWS 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF     +DL +LYG+ FE  Y  YE+     E  V   + A  LW+K+LT  FE G P+
Sbjct: 346 LFDSLACADLTNLYGEAFEARYIQYEQD----ESIVRETVKAKDLWKKILTSYFEIGSPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSINLLAHFANNQFD 617
           + FKD  N  +P  H G++ SSNLCTEI  N+    T +      G+I     +     D
Sbjct: 402 LCFKDNANRANPNAHAGIIRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITD 461

Query: 618 Y------DKLAST------------------------------------------IRTAV 629
           Y      +K+ ST                                          +  A+
Sbjct: 462 YGIEKLSNKITSTDSIGGKKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAI 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S   ++  D  ME 
Sbjct: 522 RMLDNVIDLNFYPNRKVKVTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMES 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +S++AI +S ELAQE+G YS F GS W +G+FPID     A+   +          W+ L
Sbjct: 582 VSYNAIKSSCELAQEKGVYSDFVGSEWSKGIFPIDKANNEAKALVDRGGLFAYDYDWNAL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REEVKTKGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W+                           + +A+EID   L+++A+ RQKWIDQ
Sbjct: 699 --SLDNWN--------------------------YYTSAYEIDQRLLVKAAAVRQKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N++  L+  SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 731 GQSTNIFMALNLASGKYLNEIYTLAWKLGLKSTYYLRSQS 770


>gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
 gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
          Length = 875

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/665 (41%), Positives = 396/665 (59%), Gaps = 25/665 (3%)

Query: 265 KARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAF 320
           K  ++ E  +   L Y   L + + +ERDF F Y G + L   Y +  N  +I E PQ  
Sbjct: 132 KKGVISEEFLQMALKYEKKLNDAIVHERDFNFTYFGWKTLCQSYLIKKNADQIHETPQFL 191

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
           FMRVA+ +     E     +E Y L+S  +F+ ++PTLFN+GT +  LSSCFL  + +D 
Sbjct: 192 FMRVALAIH-GPFEDIDSVIETYELMSRKYFIHASPTLFNAGTVNQYLSSCFLVGMKEDS 250

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L++ A+++K SGG+G   + +R  GAH+ G+NG S G++P L+V N+TA  V+
Sbjct: 251 IEGIFKTLEDTALISKASGGIGIHVSNIRASGAHVSGSNGTSNGIVPMLRVFNNTARYVD 310

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA C YLE WH DV +FL LRKN G D  R  D+  A WIPDLFMKRV  N  
Sbjct: 311 QGGNKRPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGE 370

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LFSPDE   L D+YGKEFE  YE YE  A        +++ A  LW ++L    ETG 
Sbjct: 371 WSLFSPDEAPGLSDVYGKEFEELYEQYEATA-----LPMKRVKAQKLWSEILQAQVETGG 425

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQ 615
           P++ +KD CN++S Q+++G + SSNLC EI   SS +ETAVCNL S+ L   +    N  
Sbjct: 426 PFMLYKDSCNLKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKG 485

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ KL + ++T  R LD VID+  + I +A+ SN  +R   +G+ G      +L IP
Sbjct: 486 SIFDFVKLHAVVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIP 545

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S EA  +  +  E I   A+  S+ELA+E GAY +F+GS   QG+   D  GL  +  
Sbjct: 546 YESQEARILNTQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNY 605

Query: 734 DELAMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           D L  +      W ELK R++   G+RNS  +   PTA+ + I G ++S +P   N+Y +
Sbjct: 606 DFLYRD------WGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYAR 659

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F  VN ++V+   Q  +W+E + + +   +GS+ NI+ +PD +KKI+ T +EI 
Sbjct: 660 RVLSGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIP 719

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              LI+ A  R  +IDQ+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A++ 
Sbjct: 720 QRPLIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAA 779

Query: 912 EKSTL 916
            + T+
Sbjct: 780 IQFTV 784


>gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum]
          Length = 808

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/774 (35%), Positives = 435/774 (56%), Gaps = 56/774 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + V    +  +    +Y G++  +L+T    ++  +    P+YA + AR 
Sbjct: 29  IQKLCYGLNMEFVDPVSITLKVISGLYPGVTTVELDTLAAETAAMMTTNHPDYAILAARI 88

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  ++K     T  + Q +  E               H +++  
Sbjct: 89  AVSNLHKETKKQFSDVIDDLHKAVSSKTGRKTQMISDE---------------HHAIVMK 133

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L + + Y+RDF++ Y G + L   Y L ING  +E PQ   MRVA+G+   + +  
Sbjct: 134 NADRLNSCIIYDRDFSYNYFGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHGSDIDS- 192

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YN +S  +F  ++PTLF++ T  PQLSSCFL T+P+D L GI   L + AM++K
Sbjct: 193 --AIETYNYMSEKYFTHASPTLFSAATPKPQLSSCFLVTLPEDNLEGISRCLTQCAMISK 250

Query: 396 YSGGLGNDWTPVRGLGAH----IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
            +GGLG     +R  G      + GT   S G++P L+V N++A  V+QGG KR GA   
Sbjct: 251 TAGGLGVSIHNLRAKGTTFRTTLAGTPKVSDGIVPVLRVFNNSARYVDQGGNKRPGACAI 310

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ +FL+L+KNTG ++ R  D+  A W PDLFM+RV  +  W+L  P +   L
Sbjct: 311 YLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDEKWSLMCPHQSPGL 370

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D +G+EFE  YE YE        +  R++ A  +WR +     ETG P++ +KD CN +
Sbjct: 371 ADCWGEEFEKLYEKYETDG-----RYVRQLPARDVWRAICVSQVETGTPYMLYKDACNRK 425

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTA 628
           S QQ++G + SSNLCTEI   +S +E AVCNL SI  N+      + +D++KL    +  
Sbjct: 426 SNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVKADRSGYDFNKLKEITKVV 485

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            + L+ VID+N + + +A+KSN  HR +G+G+ G   A  LL +P+ SPEA  +  +  E
Sbjct: 486 AKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILLRMPFDSPEAKALNRQIFE 545

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + + A+ AS ELA++ G Y +++GS   QGV   D  G+            T+   W +
Sbjct: 546 TLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTP----------TNLWDWSD 595

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LKK++   G+RNS  +A  PTA+ A I G ++S +P   N+YV+  +SG+F VVN  L+ 
Sbjct: 596 LKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIYVRRVLSGEFQVVNQHLLK 655

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L +R LWD+ M + +  + GSI NI  IPDDLK+++ T +EI    +I+ A+ R  +ID
Sbjct: 656 DLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWEISQKVIIDMAADRGAFID 715

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL 916
           Q+QS+N+++  P+   +  ++   W  GLKT  YYLR++ A      +V+KS L
Sbjct: 716 QSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAANPIQFTVDKSKL 769


>gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis]
 gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis]
          Length = 771

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/738 (38%), Positives = 412/738 (55%), Gaps = 42/738 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATH 245
           +Y G+S  +L+      + +L     +YA + AR  +  L +E   V + V++   K  +
Sbjct: 11  LYCGVSTQELDNLAAEIAASLTTLHADYALLAARIAVSNLHKETKKVFSDVFEDLFKHVN 70

Query: 246 HEMQCLYP---EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
            E     P   EY              H +++  +   L + + Y+RDF + Y G + L 
Sbjct: 71  KETNLPSPLVSEY--------------HYNIVKNNSDRLNSAIIYDRDFGYNYFGFKTLE 116

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L ING   E PQ   MRVA+G+     E    AVE YNLLS   F  ++PTLF + 
Sbjct: 117 RSYLLKINGKIAERPQHLLMRVAIGI---HGEDIDSAVETYNLLSERFFTHASPTLFAAA 173

Query: 363 TRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL T V D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S
Sbjct: 174 TNRPQLSSCFLLTIVSDSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTS 233

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+ 
Sbjct: 234 NGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLF 293

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A WIPDLFMKRV  N  W+L  P +   L D++G++FE  Y  YER+      +  R I
Sbjct: 294 FALWIPDLFMKRVEANEDWSLMCPHKCPGLPDVWGEDFENLYIKYEREG-----RANRVI 348

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A +LW  ++    ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVC
Sbjct: 349 KAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVC 408

Query: 601 NLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL SI L       + +D+ KL    +   + L+ +IDIN + + +AKKSN  HR IG+G
Sbjct: 409 NLASIALNMFVTQEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIG 468

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + GF  AL L+   Y S EA  +  +  E I + A+ AS ELAQ  G Y ++ GS   +G
Sbjct: 469 VQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGSPVSKG 528

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +   D              + T    W+ LKK +   G+RNS  +A  PTA+ A I G +
Sbjct: 529 ILQYDMWN----------KSPTDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQILGNN 578

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +S +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP 
Sbjct: 579 ESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNIESIPK 638

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT
Sbjct: 639 EIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKT 698

Query: 900 -TYYLRSRSATSVEKSTL 916
             YYLR++ A +  + T+
Sbjct: 699 GMYYLRTKPAANAIQFTV 716


>gi|292490775|ref|YP_003526214.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579370|gb|ADE13827.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 1695

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/411 (56%), Positives = 297/411 (72%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG VT FDPSKI+ A+ KAF+AVEG  A+ S R+   ++ LT Q V    +  ++
Sbjct: 27  RVIRRNGKVTGFDPSKIAVAMTKAFLAVEGGSAATSKRIHQTVEALTAQVVEACTRRLET 86

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              VHIEDIQDQVE +LM+ G+HKI R YVLYREER+  RA  +         P L++ +
Sbjct: 87  GGTVHIEDIQDQVELALMRGGYHKIARAYVLYREERTRERAQAAAKTKKKAAEPPLQMTL 146

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG ++  +  RL  I+EEAC  L +   + +L+ET +N++DG++E D+E ALI S+RT 
Sbjct: 147 ADGRVVPLDKARLTRIIEEACQALPETQPQTILNETLRNLFDGVAEQDVERALIMSARTF 206

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IEKEP+Y+ V AR LL+ LRRE L+ ++     AT  EM   YPEYF  YI++G   +L+
Sbjct: 207 IEKEPHYSYVAARLLLDSLRREALSFIHGAETHATQGEMAERYPEYFAAYIKQGADLQLI 266

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              +  +DL  L   L+ ERDF F YLGLQ LYDRYF+H  G R E+PQAFFMRVAMGLA
Sbjct: 267 DPRLTQYDLTRLGQALRPERDFEFTYLGLQTLYDRYFIHSGGIRFELPQAFFMRVAMGLA 326

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           + E E+E+R +EFY LLSSF FM STPTLFNSG+  PQLSSC+LTTV DDL GI+ A+++
Sbjct: 327 INEVEREERTIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSCYLTTVADDLDGIYSAIKD 386

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKVANDTAVAVNQ
Sbjct: 387 NALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVNQ 437



 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/372 (62%), Positives = 283/372 (76%), Gaps = 5/372 (1%)

Query: 586  TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            TEITLN+S +E AVCNLGSINL  H   N  +  KL  TI TA+R+LDNVID N +++  
Sbjct: 1326 TEITLNTSDDEIAVCNLGSINLPQHLDENGLNLPKLEKTITTAMRMLDNVIDYNYYSVPT 1385

Query: 646  AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            A++SN  HR +GLGLMGFQ AL+ L +PYAS  AVE AD SME IS++AI AS  LA ER
Sbjct: 1386 ARRSNLRHRPVGLGLMGFQDALYKLRLPYASEAAVEFADRSMEAISYYAIKASSNLAGER 1445

Query: 706  GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +F+GSLW +G+ PIDSIGLL + R   L  +RT  L WD L+++VKT+GMRNSNCM
Sbjct: 1446 GKYCTFEGSLWSKGILPIDSIGLLEQGRGGYLQQDRTQTLDWDGLREQVKTVGMRNSNCM 1505

Query: 765  AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            AIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK RDLWDE M++DL
Sbjct: 1506 AIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKARDLWDEVMVNDL 1565

Query: 825  KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
            KY DGS+  I+RIP+DLK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKK
Sbjct: 1566 KYFDGSVQPIDRIPEDLKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKK 1625

Query: 885  LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSS 943
            LD +Y+ AW+ GLKTTYYLRS  AT VEKST+       LNAV    P         P +
Sbjct: 1626 LDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSDQVNTLNAVQSGSPQEPESE--APQA 1683

Query: 944  CTS-DTECEVCQ 954
            C+  D +CE CQ
Sbjct: 1684 CSILDPDCEACQ 1695



 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 138/169 (81%), Gaps = 8/169 (4%)

Query: 425 IPF---LKVAND-----TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           +PF   LKV  D     TA  V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRT
Sbjct: 792 LPFVYDLKVEGDPSYMTTAALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRT 851

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PDLFMKRV ++  WTLFSPDE  DLHDL G+ FE AY  YE +A  GEIK 
Sbjct: 852 HDMNTANWVPDLFMKRVAEDGEWTLFSPDETPDLHDLVGQAFEEAYLRYEEKAACGEIKN 911

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           F+K  AV LWRKML+MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLC
Sbjct: 912 FKKQRAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLC 960


>gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 766

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/761 (36%), Positives = 434/761 (57%), Gaps = 37/761 (4%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    V   ++  +    +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 31  ISKLCYGLNTDFVDPCVITQKVIVGLYPGVTTVELDNLAAETAATMTTKHPDYAILAARL 90

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L +E    V+ +     +H +     +      EE  K  + +   ++  +VY   
Sbjct: 91  AISNLHKET-KKVFSEVMTDLYHMVNETNGKSTPMISEETYKIVMNNADFLNSSIVY--- 146

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
               +RDF + Y G + L   + L ING  +E PQ   MRV++G+     +    A+E Y
Sbjct: 147 ----DRDFNYNYFGFKTLERAHLLKINGKVVERPQHMLMRVSIGI---HGDDLSSAIETY 199

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           NL+S   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG+G 
Sbjct: 200 NLMSEKWFTQASPTLFNAGTPKPQLSSCFLLQMKDDSIEGIYDTLKQCALISKSAGGIGI 259

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461
           +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA+  YLE WH DV +
Sbjct: 260 NIHNIRASGSYIAGTNGTSNGIVPMLRVYNNTARYVDQGGNKRPGAIAIYLEPWHADVFD 319

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLDL+KNTG +  R  D+    WIPDLFMKRV ++  W+L  P E   L D+YG++FE  
Sbjct: 320 FLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEEDGIWSLMCPHESPHLQDVYGEDFEKL 379

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y  YE      E +  R++ A  LW  ++    ETG P++ +KD CN +S Q++VG +  
Sbjct: 380 YVRYET-----EKRYRRQVRAQQLWSAIIESQTETGTPYMLYKDACNRKSNQKNVGTIKC 434

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLCTEI   +S +E AVCNL SI L     +  FD++KL    R   R L+ +ID+N +
Sbjct: 435 SNLCTEIVEYTSVDEVAVCNLASIALNRFVYHGHFDFEKLRQVTRVVTRNLNKIIDVNYY 494

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            I +AK SN  HR IG+G+ G   A  LL +P+   EA EI  +  E I + A+  S EL
Sbjct: 495 PIPEAKLSNMRHRPIGIGVQGLADAFILLRLPFDCDEACEINKKIFETIYYGALEESCEL 554

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +++ G Y ++ GS   QG+   D   +            ++   W  LK+R+K+ G+RNS
Sbjct: 555 SKKFGPYETYPGSPVSQGILQYDMWNVTP----------SNLWDWSALKERIKSFGIRNS 604

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A  PTA+ A I G +++++P   N+Y +  +SG+F +VN  L+ +L +  LW++ + 
Sbjct: 605 LLVAPMPTASTAQILGNNEAMEPYTSNVYTRRVLSGEFQIVNHHLLKDLTRLGLWNDNLK 664

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           ++L  ++GS+  +  IP +LK ++ T +EI    ++E ++ R  ++DQ+QSLN+++ +P+
Sbjct: 665 NELIANNGSVQKLN-IPKELKMLYRTVWEISQKNILEMSADRGAFVDQSQSLNIHIAQPT 723

Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTL 916
             KL  ++   W +GLKT  YYLR++ A      +V+KS L
Sbjct: 724 YGKLTSMHFCGWKLGLKTGMYYLRTKPAVNAIQFTVDKSLL 764


>gi|290343605|ref|YP_003494972.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
 gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
          Length = 747

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/739 (36%), Positives = 418/739 (56%), Gaps = 45/739 (6%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           ++  S  V  +   ++YDG++  +++T        +I  +P+Y              E+L
Sbjct: 31  KNCDSSKVAQQVASSLYDGIAAQEIDTLSAEVCVGMITSDPDY--------------EIL 76

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
            T      +     +Q + P  F   +++  KA ++ E +       + +D+  +RD+ F
Sbjct: 77  AT------RIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARI-AGRVRDDIVTKRDYDF 129

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            Y GL+ L   Y   ++G  +E PQ  FMRV++G+     E     +E Y+ +S   F+ 
Sbjct: 130 GYFGLKTLEKSYLQRLDGILMETPQYMFMRVSIGI---HGEDIPSVLETYDKMSQGMFIH 186

Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFN+GT  PQ+SSCFL     D + GI+G+L E A ++K++GG+G     VR   +
Sbjct: 187 ATPTLFNAGTPRPQMSSCFLIANKGDSIDGIYGSLTECAQISKWAGGIGMHIHDVRANKS 246

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNG+S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ +FL+LR N GD+
Sbjct: 247 RIRGTNGQSDGIIPMLRVFNATARYVNQAGRRKGSIAVYLEPWHADIMDFLELRLNQGDE 306

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  D+ +A WIPDLFMKRV +   W+LF PD+   L +  G+EFE  Y  YE +    
Sbjct: 307 EARCRDLFSALWIPDLFMKRVEEGGQWSLFCPDKAPGLSEAVGEEFEALYTKYEEEG--- 363

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +    + A  +W+ +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   +
Sbjct: 364 --RANATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIKSSNLCTEIIEYT 421

Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             +ET+VCNL SI  L  + N +   FDY+KL    +   + L+ VID N + +E A+KS
Sbjct: 422 DKDETSVCNLASI-ALPKYVNEETRSFDYEKLHEITKVVTKNLNRVIDRNFYPVETARKS 480

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IGLG+ G      L  + + S EA  +     E +   A+ AS ELA+  G Y 
Sbjct: 481 NMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYE 540

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+GS   QG+   D    + E   +L  +      WD LK+R++ +G+RNS  MA  PT
Sbjct: 541 TFEGSPASQGILQFD----MWEGETKLNYD------WDALKERIRGVGLRNSLLMAPMPT 590

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++  +P   N+Y++  ++G+F VVN  LV +LK+  LW + M   +    G
Sbjct: 591 ASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGG 650

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI NI  IPDD+K ++ T +EI    +I+ A+ R ++IDQ+QS+NL+++ P+  KL  ++
Sbjct: 651 SIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMH 710

Query: 890 RQAWLMGLKT-TYYLRSRS 907
             AW  GLKT  YYLRS++
Sbjct: 711 MYAWKQGLKTGMYYLRSKA 729


>gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
 gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
          Length = 895

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 283/772 (36%), Positives = 428/772 (55%), Gaps = 52/772 (6%)

Query: 166 VEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           + + C GL        +V+ K+V+      +Y G++  +L+     ++  L  K P+YA 
Sbjct: 47  ISKLCYGLDLNFVDPIEVAQKVVVG-----VYQGVTTVELDNLAAETAAYLTTKHPDYAV 101

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276
           + AR  +  L +E         +K+    M+ LY EY     + G  A ++ +   +   
Sbjct: 102 LAARIAVSNLHKET--------KKSFSQVMKDLY-EYVNP--KNGKPAGMISKETWEVIR 150

Query: 277 -DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +   L + + Y RDF + Y G + L   Y L +NG   E PQ   MRVA+G+  ++ + 
Sbjct: 151 DNADTLDSAIIYNRDFNYNYFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHGRDID- 209

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
             R +E YNL+S  +F  ++PTLFN+GT HPQLSSCFL  + DD + GI+  L+  AM++
Sbjct: 210 --RVLETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKNCAMIS 267

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QGG KR GA   Y+E
Sbjct: 268 KTAGGIGLNIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAFAIYIE 327

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  +  W+LF P+E   LHD+
Sbjct: 328 PWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFCPNEAPGLHDV 387

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +  EFE  YE YE++      +  + I A  LW  +L    ETG P++ +KD  N +S Q
Sbjct: 388 HSAEFEELYERYEKEG-----RARKTIRAQKLWYAILEAQIETGGPFMVYKDHANAKSNQ 442

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +++G + SSNLCTEI   SS +ETAVCNL S+ L     +  +D+ KL    +     L+
Sbjct: 443 KNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIKDGVYDFKKLHEVTKVVTYNLN 502

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +ID+N + I +A++SN  HR IG+G+ G   A   L +P+ S  A E+  +  E I   
Sbjct: 503 RIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQIFETIYHA 562

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS E+A   G Y +++GS   QG    D  G+            +    W  LK ++
Sbjct: 563 ALEASSEIAARDGPYETWEGSPASQGQLQYDLWGV----------KPSDLWDWASLKAQI 612

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +L+ EL   
Sbjct: 613 AKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDL 672

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LWD+ M + +  H+GS+ NI  IP D+K I+ T +EI    +I+ A+ R  +I Q+QSL
Sbjct: 673 GLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGAFICQSQSL 732

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919
           N++L  P+  +L  ++   W  GLKT  YYLR+R A      +V++S LK  
Sbjct: 733 NVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSLLKAA 784


>gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Leptosphaeria maculans]
          Length = 903

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/755 (35%), Positives = 425/755 (56%), Gaps = 39/755 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++      KK   A  H++      Y     + G    ++ + +    + +   
Sbjct: 82  AVSNLHKQT-----KKQFSAVVHDL------YSYVNPKNGKSQPMISDKVYKIVMAHADE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF +++ G + L   Y L ING   E PQ   MRVA+G+  ++ EK   A+
Sbjct: 131 LNSAVVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+  A+++K +GG
Sbjct: 188 ETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALISKTAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHAD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D+YG EF
Sbjct: 308 VFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE+YE++    E      + A  LW  +L    ETG+P++ +KD CN +S Q+++G 
Sbjct: 368 EALYESYEKKGKGRET-----VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGT 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+ KL    +   R L+ +I
Sbjct: 423 IRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGEFDFKKLHEVTQVVTRNLNKII 482

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           ++N + +E+A++SN  HR IG+G+ G   A   L +P+ SPEA ++  +  E I   A++
Sbjct: 483 EVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESPEAKKLNIQIFETIYHAALT 542

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           +S ++A+E G Y ++ GS   QG+   D   +            T    W  LK+++   
Sbjct: 543 SSCDIAKELGPYETYAGSPVSQGILQYDMWNVTP----------TDLWDWAALKEKIAQY 592

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E M + +    GSI  I  IP++ K ++ T +EI    +I+ A+ R  +IDQ+QSLN++
Sbjct: 653 SENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           + EP+  K+  ++   W +GLKT  YYLR+ +A++
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASA 747


>gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 748

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/746 (36%), Positives = 423/746 (56%), Gaps = 44/746 (5%)

Query: 168 EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
           E  S   DV+   +  + + ++YDG+   +++T        +I  +P+Y  +  R     
Sbjct: 27  EGLSETVDVTK--IAQQVFSSIYDGIKTPEIDTLSAEICIGMITSDPDYEILATRI---- 80

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
                 + + K+     H  M+ L+            KA ++   +++     + +D+K 
Sbjct: 81  ----TASNIQKRAANNFHIAMRKLH------------KAGIVTHEVLEVS-SKVKDDIKP 123

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           ERDF F Y GL+ L   Y   I+G  IE PQ  +MRVA+G+   + +     +E Y  LS
Sbjct: 124 ERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYMYMRVAIGIHGHDID---HVLETYEALS 180

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406
              F+ +TPTLFN+GT  PQ+SSCFL +  +D + GI+  ++E A ++K++GG+G     
Sbjct: 181 KGLFIHATPTLFNAGTPRPQMSSCFLISNKEDSIDGIYDTVKECARISKWAGGIGLHIHD 240

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR   +HI GTNG S G+IP L+V N TA  VNQ G+RKG++  YLE WH D+ +FL++R
Sbjct: 241 VRANKSHIRGTNGTSDGIIPMLRVYNTTARYVNQAGRRKGSIAVYLEPWHADILDFLEIR 300

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            N GD+  R  D+ +A WIPDLFMKRV     W+LF PD    L D+YGKEFE  YE YE
Sbjct: 301 LNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLFCPDVARGLSDVYGKEFEELYEKYE 360

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    KV   + A  +W+ ++    ETG P++ +KD CN +S  +H+G + SSNLCT
Sbjct: 361 --ADGIATKV---VPASEVWKAIIKSQSETGTPYMLYKDACNEKSNHKHIGTIKSSNLCT 415

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   +  +ETAVCNL SI L  +      +F++++L    +   R L+ VID N +  E
Sbjct: 416 EIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEELHRVTKMVTRNLNKVIDKNFYPTE 475

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             K+SN  HR IG+G+ G      +L + + S E+ ++  +  E I   ++ +S ELA+ 
Sbjct: 476 NGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEM 535

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y SFKGS + +G+   D        RD      + R  W+ +++ VK  G  NS  +
Sbjct: 536 YGPYESFKGSPFSKGILQFDMWD-----RDP---KFSGRYDWNAMRELVKK-GTMNSLLL 586

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y++  ++G+F VVN  LVN+LK+R LW + M   +
Sbjct: 587 APMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLM 646

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              +GS+ NI  IPDDLK+++ T +E+    +I+ A+ R  +IDQ+QS+NL+++ P+  K
Sbjct: 647 VKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISK 706

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L  ++  AW  GLKT  YYLRS++ +
Sbjct: 707 LSSMHMYAWKTGLKTGMYYLRSKAKS 732


>gi|146091813|ref|XP_001470128.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           infantum]
 gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania infantum JPCM5]
          Length = 799

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/678 (40%), Positives = 391/678 (57%), Gaps = 33/678 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335
           L + + Y RD  FE+ G + L   Y L I   R EM     PQ  FMRVA+G+   +   
Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL-- 193

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
            K   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL    +D + GI+  L+E A+++
Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KRKGA   YLE
Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV     WTL  P+    L D 
Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG+EFE  YE YE +  RG     + I A  +W  +L    ETG P+I +KD CN +S Q
Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631
           +++G +  SNLCTEI   +S +ETAVCNL SI L         +F++  L +  +   R 
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ S EA  +  E  E I 
Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ +S+ELA+E G Y +F GS   +G+   D          + A   + R  W  LK+
Sbjct: 548 FAAVESSMELAKEDGPYETFTGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L 
Sbjct: 600 KVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    LI+ A  R ++IDQ+Q
Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           SLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K T   VD K        
Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQER 776

Query: 931 PNS----STHSLGIPSSC 944
            NS    S+H    P  C
Sbjct: 777 ENSQQTMSSHRASQPEEC 794


>gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 824

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/765 (36%), Positives = 431/765 (56%), Gaps = 49/765 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  V       +Y G++  +L+     ++ T+  K P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAVTQRVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARI 81

Query: 224 LLEKLRREV---LTTVYKK------PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++     ++V +K      P+   H  M            +E  +  + H+  +
Sbjct: 82  AVSNLHKQTDKAFSSVVQKLHDWVNPKTGKHAPMIS----------DEVYEIVMKHKDEL 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           D  ++Y       +RDF + Y G + L   Y L I+G   E PQ   MRVA+G+   + E
Sbjct: 132 DSAIIY-------DRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIMRVAVGIHHDDIE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
               A+E YN +S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + GI+  L+  AM+
Sbjct: 185 A---AIETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYETLKTCAMI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA  AYL
Sbjct: 242 SKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAAYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV +F++LRK  G +  R  ++  A WIPDLFM+RV +N  W+ F P+E   L D
Sbjct: 302 EPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWSFFCPNEAPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           ++G+EFE  YE YER+      +  R + A  +W +++    ETG+P++ +KD CN +S 
Sbjct: 362 VWGEEFEELYERYEREG-----RARRVLPAQKVWYEIIRAQSETGNPFMLYKDSCNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G +  SNLCTEI   SS +E AVCNL SI L     + ++D+ +L +  +   R L
Sbjct: 417 QKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQLHNVAKVVTRNL 476

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+N + + +A++SN  HR +GLG+ G   A   L  PY SPEA ++     E I  
Sbjct: 477 NRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEARKLNLLIFETIYH 536

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA E G Y +++GS   QG+   D   +            T    W  LK +
Sbjct: 537 AALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTP----------TDLWDWASLKAK 586

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F +VN +L+ +L  
Sbjct: 587 IAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLRDLVD 646

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LWDE M + L  +DGSI  I  IP DLK ++ T +EI    +I+ A+ R  +IDQ+QS
Sbjct: 647 LGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYAADRGAFIDQSQS 706

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+
Sbjct: 707 LNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTV 751


>gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata]
          Length = 894

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/761 (37%), Positives = 424/761 (55%), Gaps = 37/761 (4%)

Query: 166 VEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           +   C GL   + +  V       +Y+G++  +L+     +   +    P+YA + AR  
Sbjct: 22  ISRLCYGLDPRIDAVKVTQRIISGVYEGVTTVELDNLAAETCAYMTTIHPDYATLAARVA 81

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +  L ++  T  + +     +H +     ++     +E  +  + ++  +D  +VY    
Sbjct: 82  ISNLHKQT-TKQFSQVVSNLYHYINPATGKHAPMISDEVYQIVMDNKDELDSAIVY---- 136

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
              +RDF F Y G + L   Y L ING   E PQ   MRVA+G+  ++ E    A+E YN
Sbjct: 137 ---DRDFQFNYFGFKTLERSYLLRINGEVAERPQHLIMRVALGIHGRDLEA---ALETYN 190

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
           L+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + GI+  L+E A+++K +GG+G  
Sbjct: 191 LMSLRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEGIYDTLKECALISKTAGGIGLH 250

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
              +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D+ +F
Sbjct: 251 IHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDF 310

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +D+RKN G +  R  D+  A W+PDLFMKRV QN  WTLFSP     L D YGKEFE  Y
Sbjct: 311 IDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTLFSPSSAPGLSDCYGKEFEELY 370

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YER+  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+++GV+ SS
Sbjct: 371 ERYEREG-RG-----KTIKAQKLWYSILEAQTETGTPFMIYKDACNEKSNQRNLGVIKSS 424

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVI 636
           NLC EI   SS +ETAVCNL SI L A    ++      +++ KL    +   R L+ VI
Sbjct: 425 NLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTSTYNFQKLHDIAKVITRNLNKVI 484

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D N + + +AK SN  HR I LG+ G      LL +P+ S  A ++  +  E I   ++ 
Sbjct: 485 DRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFDSEGAAKLNIQIFETIYHASLE 544

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELAQ+ G Y S++GS   +GVF  D                     WD L+K +   
Sbjct: 545 ASCELAQKDGPYQSYQGSPISKGVFQFDMWN----------AKPFGMWDWDALRKDILKH 594

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ +L    +W
Sbjct: 595 GVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIW 654

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           DE M   +   +GSI N+  IP +LK ++ T +EI    +I  A+ R  +IDQ+ SLNL+
Sbjct: 655 DEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLF 714

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           L  P+  K+  ++   W  GLKT  YYLR+++A++  + T+
Sbjct: 715 LQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTI 755


>gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 799

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/652 (41%), Positives = 384/652 (58%), Gaps = 29/652 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335
           L   + Y RD +FE+ G + L   Y L I   R EM     PQ  FMRVA+G+   +   
Sbjct: 136 LQGMIDYSRDLSFEFFGYKTLERSYLLRIESGRGEMRIVERPQQMFMRVALGIHGTDL-- 193

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
            K   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL    +D + GI+  L+E A+++
Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KRKGA   YLE
Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+  FL L++NTG D +R  D+  A WIPDLFM+RV     WTL  P+    L D 
Sbjct: 313 PWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG+EFE  YE YE +  RG     + I A  +W  +L    ETG P+I +KD CN +S Q
Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFILYKDACNSKSNQ 427

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631
           +++G +  SNLCTEI   +S +ETAVCNL SI L         +F++  L +  +   R 
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + +E A+ SN  +R IGLG+ G   A  L+ +P+ S EA  +  E  E I 
Sbjct: 488 LNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ +S+ELA+E G Y +FKGS   +G+   D   +    R       + R  W  LK+
Sbjct: 548 FAAVESSMELAKEEGPYETFKGSPASEGILQFD---MWKNPRPN-----SGRWDWASLKE 599

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V  +G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L 
Sbjct: 600 KVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R LW+E+M +++  ++GSI  I  IPDDL++++ T +EI    LI+ A  R ++IDQ+Q
Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
           SLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K T   VD K
Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAADAIKFT---VDAK 768


>gi|322500426|emb|CBZ35503.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 799

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/678 (40%), Positives = 391/678 (57%), Gaps = 33/678 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-----PQAFFMRVAMGLALKETEK 335
           L + + Y RD  FE+ G + L   Y L I   R EM     PQ  FMRVA+G+   +   
Sbjct: 136 LQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQMFMRVALGIHGADL-- 193

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
            K   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL    +D + GI+  L+E A+++
Sbjct: 194 -KNVRETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKEDSIDGIYDTLKECAVIS 252

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QGG KRKGA   YLE
Sbjct: 253 KAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYVDQGGGKRKGAFAVYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV     WTL  P+    L D 
Sbjct: 313 PWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMDPNTCPGLSDC 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG+EFE  YE YE +  RG     + I A  +W  +L    ETG P++ +KD CN +S Q
Sbjct: 373 YGEEFERLYERYESEG-RG----VKTIQAQEVWFAILESQIETGGPFVLYKDACNSKSNQ 427

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRV 631
           +++G +  SNLCTEI   +S +ETAVCNL SI L         +F++  L +  +   R 
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTKQITRN 487

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ S EA  +  E  E I 
Sbjct: 488 LNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIY 547

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F A+ +S+ELA+E G Y +F GS   +G+   D          + A   + R  W  LK+
Sbjct: 548 FAAVESSMELAKEDGPYETFTGSPASEGILQFDMW--------KNARPNSGRWDWASLKE 599

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L 
Sbjct: 600 KVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLI 659

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    LI+ A  R ++IDQ+Q
Sbjct: 660 ARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQ 719

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           SLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K T   VD K        
Sbjct: 720 SLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFT---VDAKRMKEIQER 776

Query: 931 PNS----STHSLGIPSSC 944
            NS    S+H    P  C
Sbjct: 777 ENSQQTMSSHRASQPEEC 794


>gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis]
 gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis]
          Length = 797

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/762 (37%), Positives = 439/762 (57%), Gaps = 42/762 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + V    +  +  + +Y+G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      Y+    G  + ++ +  +D  L   
Sbjct: 82  AVSNLHKET--------KKIFSDVMEDLY-----NYVNPLNGKHSPMVSKETLDLVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ + G + L   Y L I+G   E PQ   MRV++G+   + +    
Sbjct: 129 DRLNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQHMLMRVSVGIHKTDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E   L +++G 
Sbjct: 306 YDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +FE  YE YER+      +  + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 KFEELYERYEREG-----RARKVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +      FD+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTPERSFDFKKLADVTKVIVRNLNKI 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+
Sbjct: 481 IEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFESEEAQLLNKQIFETIYYAAL 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +S ELA+E G Y +++GS   +G+   D   +            T    W  LK+++  
Sbjct: 541 ESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTP----------TGLWDWAALKEKIAK 590

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R L
Sbjct: 591 YGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTERGL 650

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M + +  ++GSI N+  IP DLK+++ T +EI    +I  A+ R  +IDQ+QSLN+
Sbjct: 651 WNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNI 710

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 711 HVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTL 752


>gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi]
 gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi]
          Length = 812

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/770 (35%), Positives = 445/770 (57%), Gaps = 31/770 (4%)

Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216
           F+S+++ + +++    L  ++   ++ +    +++ ++   L+  +      +    P+Y
Sbjct: 14  FSSEKIRIRLQDHTKDLYHINIDSIIEKLQLEIHNDITTEKLDNLIAECIAYMAYSHPDY 73

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            K+  R  +  L +   +    K  +  H     ++P          + + L+ E + + 
Sbjct: 74  LKLAGRVKVSTLHKHTKS----KFSEVVHDLRNFIHPR-------TNLPSPLISEEVFNV 122

Query: 277 ---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKE 332
              ++  L   +K ERDF F+Y G + L   Y L +  SRI E PQ  FMRV++G+   +
Sbjct: 123 VAANVDVLDQAIKSERDFQFDYFGYKTLERSYLLKLADSRIAERPQHMFMRVSLGIHGGD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   RA++ Y+LLSS  F+ ++PTLFN+GT  PQ+SSCFL ++ DD ++GI+  L+  A
Sbjct: 183 IE---RAIQTYDLLSSGMFIHASPTLFNAGTPIPQMSSCFLVSMKDDSIHGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QGG KRKGA   
Sbjct: 240 LISKSAGGIGLSVHNIRASGSYIRGTNGTSNGLIPMLRVFNDTARYVDQGGGKRKGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ +FLDLRKN G +  R  D+    W+ DLFM+RV  +A W+LF P+E   L
Sbjct: 300 YLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFCPNEAQGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D++G+EF   Y  YER+      K  R I A  LW  ++    ETG P++ +KD CN +
Sbjct: 360 ADVWGEEFNQLYTKYEREG-----KAKRTIKAQELWFAIIEAQIETGVPYMLYKDSCNRK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRT 627
           S QQ++G + SSNLCTEI   ++ +E AVCNL SI  L  + N +   +D+ KL   ++ 
Sbjct: 415 SNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASI-ALPKYVNEETQTYDHQKLYEVVKI 473

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A   L+ +ID N + +E+AKKSN  HR IGLG+ G   A   + +P+ S EA  +  E  
Sbjct: 474 ATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEEAKNLNREIF 533

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I F A++ S+ELA+  G Y +++GS   +G+F  +      E  +   +  + R  W+
Sbjct: 534 ETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTIT-SGRWDWE 592

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+++V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG++ V+N  LV
Sbjct: 593 GLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPVINRHLV 652

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L + D+W+  +++ +  + GSI NI+ IPDD+K+++ T +EI    L++ A  R  +I
Sbjct: 653 ADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAIERSPFI 712

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           DQ+QSLN+++  PS  K+  ++  AW  GLKT  YYLR++ A    + T+
Sbjct: 713 DQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTV 762


>gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni]
 gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni]
          Length = 768

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 283/754 (37%), Positives = 420/754 (55%), Gaps = 41/754 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATH 245
           +Y G++  +L+      +  L     +YA + AR  +  L +E   V + V+++     +
Sbjct: 41  LYCGVTTQELDNLAAEIAAGLTCNHADYAILAARIAVSNLHKETKKVFSEVFEELYHHVN 100

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            E     P                H +++  +   L + + Y+RDF + Y G + L   Y
Sbjct: 101 KETNNPSP-----------MVSSYHYNIVKNNADRLNSAMIYDRDFGYNYFGFKTLERSY 149

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L ING   E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  
Sbjct: 150 LLKINGKVAERPQHMLMRVAIGI---HGEDIDAAVETYNLLSERYFTHASPTLFAAATNR 206

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQLSSCFL T+  D + GIF  +++ AM++K +GG+G +   +R  G  I GTNG S G+
Sbjct: 207 PQLSSCFLLTMTSDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGL 266

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V N+ A  V+QGG KR GA   YLE WH D+ EFLDL++NTG +  R  D+  A 
Sbjct: 267 VPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDIFEFLDLKRNTGKEEHRARDLFYAL 326

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV  N  W+L  P +   L D++G +FE  Y  YE++     I     + A 
Sbjct: 327 WIPDLFMKRVEANEDWSLMCPHKCPGLEDVWGDKFEELYVKYEKEGLANRI-----VKAQ 381

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +LW  ++    ETG+P++ FKD CN +S QQ+VG +  SNLCTE+   S+ +E AVCNL 
Sbjct: 382 SLWFAIIESQVETGNPYMLFKDSCNKKSNQQNVGTIKCSNLCTEVVEYSAPDEIAVCNLA 441

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           SI L      ++ +D+ KL    +   + L+ +ID+N + + +AKKSN  HR IG+G+ G
Sbjct: 442 SIALNMFVTTDKTYDFKKLKEVTKIVAKNLNKIIDVNYYPLPEAKKSNLKHRPIGIGVQG 501

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              AL L+ +PY S +A  +  +  E I F A+ AS ELAQ  G Y +FKGS   +G+  
Sbjct: 502 LADALILMRLPYESKQACLLNQQIFETIYFGALEASCELAQMYGPYETFKGSPASRGILQ 561

Query: 723 IDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D           +   + S L  W++LK  +K  G+RNS  +A  PTA+ A I G ++S
Sbjct: 562 YD-----------MWNKKPSDLWDWNKLKAAIKEHGIRNSLLVAPMPTASTAQIMGNNES 610

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP ++
Sbjct: 611 FEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNKIVSSRGSIQNIEVIPQNV 670

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           + ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  
Sbjct: 671 RDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKSGLKTGM 730

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           YYLR++ A    + T   VD   +A  ++  N S
Sbjct: 731 YYLRTKPAAHAIQFT---VDKNASATIISSQNGS 761


>gi|297268642|ref|XP_002799730.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 711

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/623 (41%), Positives = 383/623 (61%), Gaps = 22/623 (3%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L+ L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PT
Sbjct: 67  LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123

Query: 358 LFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I G
Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +
Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----R 298

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358

Query: 596 ETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHR 418

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS
Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGS 478

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +            T    W+ LK+ +   G+RNS  +A  PTA+ A 
Sbjct: 479 PVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQ 528

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I
Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648

Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916
            GLKT  YYLR+R A +  + TL
Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTL 671


>gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767]
 gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii]
          Length = 867

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/768 (36%), Positives = 431/768 (56%), Gaps = 51/768 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V    +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VQRLCYGLDTTHVEPVAITQRVISGVYQGVNTIELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L        +K+  K      + LY      Y+        LH  M+    +D++ 
Sbjct: 82  AVSNL--------HKQTTKQFSQVSKELY-----EYVNPKTD---LHSPMISKDTYDIIQ 125

Query: 281 L-ANDLK----YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
             AN+L     ++RDF + Y G + L   Y L ING   E PQ   MRVA+G+   + E 
Sbjct: 126 ANANELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHGNDIE- 184

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
             R +E YN++S  +F   +PTLFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++
Sbjct: 185 --RVIESYNMMSLRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WTLFSP+E   L D+
Sbjct: 303 PWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAKGLSDV 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EFE  Y  YE++ +RG       + A  LW  +L    ETG P++ +KD CN ++ Q
Sbjct: 363 YGDEFEELYTKYEKE-NRGR----SVVKAQKLWYAILDAQTETGTPFMLYKDACNKKTNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629
           +++G++ SSNLC EI   S+ +E AVCNL SI L A    N     +D++KL    +   
Sbjct: 418 KNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTTSWYDFEKLHEVTKVVT 477

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R L+ +ID N + + +A+ SN  +R I LG+ G   A   L +P+ S EA E+  +  E 
Sbjct: 478 RNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNTQIFET 537

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ AS+ELA+  G Y +++GS   +G+   D    L E +       T    WD L
Sbjct: 538 IYHGAVEASIELAEIEGPYQTYEGSPASKGILQFD----LWERKP------TELWDWDTL 587

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +
Sbjct: 588 KQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRD 647

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L    +W++ M +++  ++GSI  +  IPD+LK ++ T +EI    +I+ A+ R  +IDQ
Sbjct: 648 LVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQKHIIDMAADRAAFIDQ 707

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T+
Sbjct: 708 SQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTV 755


>gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens]
          Length = 793

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/771 (35%), Positives = 427/771 (55%), Gaps = 35/771 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL  + +    +  +  + +YDG++  +L+   
Sbjct: 7   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 66

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K  H  M     +      +E
Sbjct: 67  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK-LHKHMHPKTKKPAALISDE 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H+  ++  +VY       ERDF ++Y G + L   Y + ++G+  E PQ   M
Sbjct: 126 TYATVQKHKDAINAAIVY-------ERDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 178

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + +D + 
Sbjct: 179 RVALGI---HGDDLAAALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V+QG
Sbjct: 236 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 295

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N  W+
Sbjct: 296 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 355

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    ETG P+
Sbjct: 356 LMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETGTPY 410

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H         F
Sbjct: 411 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 470

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L  PY S
Sbjct: 471 DFAKLKRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 530

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D    L  V+   
Sbjct: 531 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFD----LWNVKP-- 584

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y +  ++
Sbjct: 585 ----SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLA 640

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI    +
Sbjct: 641 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 700

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           ++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R
Sbjct: 701 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 751


>gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi]
          Length = 775

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/646 (41%), Positives = 384/646 (59%), Gaps = 27/646 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L I G  +E PQ   MRVA+G+     E    A+
Sbjct: 116 LNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGI---HGEDIDSAI 172

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNLLS  +F  ++PT+F + T+ PQLSSCFL T+ DD + GI+  L++ A+++K +GG
Sbjct: 173 ETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGG 232

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G +   +R  G +I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 233 IGLNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHGD 292

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDL+KNTG +  R  DM  A WIPDLFM+RV  N  W+L  P +   L + +G+EF
Sbjct: 293 VFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDCPGLSETWGEEF 352

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y  YER+      +  R++ A  LW  ++    ETG P++ +KD CN +S QQ++G 
Sbjct: 353 EKLYTGYEREG-----RFTRQVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNIGT 407

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637
           +  SNLCTEI   SS +E AVCNL SI L      ++ +D+ KL    +T  + L+ +ID
Sbjct: 408 IKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDRTYDFAKLKEVAKTVTKNLNKIID 467

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + + +AK+SN  HR IG+G+ G   A  L+  PY S EA  +  +  E I F A+ A
Sbjct: 468 INYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEA 527

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA + G Y S+ GS   +G+   D    + E +       T    W ELK+ + T G
Sbjct: 528 SCELAAQDGPYESYDGSPVSKGILQYD----MWEKKP------TELWDWAELKRNIVTHG 577

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L + +LWD
Sbjct: 578 VRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELWD 637

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           + M + +   +GSI  IE IP  ++ ++ T +EI     I+ A+ R  +IDQ+QS N+++
Sbjct: 638 DEMKNKILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIHV 697

Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
            EP+  KL  I+   W MGLKT  YYLR++ A      +V+KS L+
Sbjct: 698 AEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSKLQ 743


>gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi]
 gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia
           malayi]
          Length = 1061

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 295/832 (35%), Positives = 463/832 (55%), Gaps = 60/832 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSE-TYKNMYDGLSESDLETALIF 204
           ++  DG   + +  ++   + + C GL QD    I +S+     +Y G++  +L+     
Sbjct: 13  VVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAE 72

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +  +I K P+YA + +R  +  L        +KK +K+     + LY      + + G 
Sbjct: 73  IAADMITKHPDYATLASRITVSNL--------HKKTEKSFSKLSRRLYN---ATHPKSGR 121

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L+ + + D    +   L + + +ERD+ + Y GL+ L   Y L ING   E PQ   
Sbjct: 122 HMPLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLKTLERSYLLQINGELAERPQHML 181

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+  ++ E    A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 182 MRVALGIHGEDIEA---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFEDSI 238

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A  V+Q
Sbjct: 239 EGIFETLKKCALISKSAGGIGLNVHCIRASGSAIAGTNGVSNGLVPMLRVFNNAARYVDQ 298

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH D+ +FL+LRKN GD+  R  D+    W+PDLFM+RV  +  W
Sbjct: 299 GGNKRPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIW 358

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P E   L D +G+ FE  Y  YE +      +  +++ A  LW  ++    ETG P
Sbjct: 359 SLMCPAECPGLEDSWGEAFEKLYTQYEEEG-----RYRKQVPARKLWETIVFTQIETGMP 413

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           ++ +KD CN ++ QQ++G +  SNLCTE+ L SS EE AVCNL SI  L  F  ++  YD
Sbjct: 414 YMVYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASI-ALGRFVTSEMKYD 472

Query: 620 --KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              L    +  V+ L+ VID N + I +A++SN  HR IG+G+ G   A  L+  P+ S 
Sbjct: 473 FKMLHEVTKVVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSE 532

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++     E I + A+ AS +LA+E+G Y S++GS   +G+   D  G+         
Sbjct: 533 KARDLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTP------- 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T +  W  L++++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y ++ +SG
Sbjct: 586 ---TDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSG 642

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F + N  L+N+L   DLWD+ M  ++  + GSI NIERIP +++ ++ T +E+    +I
Sbjct: 643 SFQIFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDII 702

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-------LM--GLKT-TYYLRSRS 907
           + A+ R  +IDQ+QSLN+++  P+   +  ++   W       LM  GLKT  YYLR+R 
Sbjct: 703 DMAADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRP 762

Query: 908 AT-----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           A      +V+K+ LK  D  +N     D NS + S  IP++ TS+   +V +
Sbjct: 763 AVDAVQFTVDKTRLKEYDS-VNG----DKNSKSSSSSIPAT-TSELATKVME 808


>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST]
 gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/779 (35%), Positives = 441/779 (56%), Gaps = 32/779 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETA 201
           K+ +   DG     +  ++   +++ C GL  D    + ++      +Y G++  +L+  
Sbjct: 9   KMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLRVINGLYSGVTTQELDNL 68

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ TL     +YA + AR  +  L +E      KK      H++  +  E+     +
Sbjct: 69  AAETAATLTTDHADYAILAARLAVSNLHKET-----KKQFSEVMHDLYMMENEFL--KTK 121

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
             + +   ++ +MD +   L + + Y+RDF + Y G + L   Y L I G  +E PQ   
Sbjct: 122 SPMISDFHYKVIMD-NADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHML 180

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNLLS  +F  ++PT+F + T+ PQLSSCFL T+ +D +
Sbjct: 181 MRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSEDSI 237

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+Q
Sbjct: 238 EGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYVDQ 297

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH D+ EFLDL+KNTG +  R  DM  A WIPDLFM+RV  N  W
Sbjct: 298 GGNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMW 357

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D +G+EFE  Y  YE++      +  R++ A  LW  ++    ETG P
Sbjct: 358 SLMCPHDCPGLSDTWGEEFEKLYTGYEKEG-----RFIRQVKAQDLWFAIIESQVETGVP 412

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
           ++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      ++ +D+
Sbjct: 413 YMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTYDF 472

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +T  R L+ +ID+N + + +AK+SN  HR IG+G+ G   A  L+  PY S E
Sbjct: 473 AKLKEVAKTVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESEE 532

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I + A+ AS ELA   G Y +++GS   +G+       L  E+ ++   
Sbjct: 533 AQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVSKGI-------LQYEMWNK--- 582

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W ELK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 583 EPTDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGE 642

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LWD  M +++  ++GSI  I  IP +++ ++ T +EI     I+
Sbjct: 643 FQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCIK 702

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+
Sbjct: 703 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 761


>gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 849

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 276/755 (36%), Positives = 430/755 (56%), Gaps = 42/755 (5%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V    V  +  + +Y G++  +L+     ++ T+  + P+YA + AR  +  L +E    
Sbjct: 65  VDPSAVAIQVIRGLYSGVTTVELDNLAAETAATMATQHPDYAILAARIDVSNLHKET--- 121

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFA 292
             KK      H++      ++ R         ++ E   +++  +   L + + Y+RDF 
Sbjct: 122 --KKSFSEVMHDL------HYARDPITNEPNPVISEHYYNIIKRNAERLDSAIIYDRDFN 173

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y+G + L   Y L ING  +E PQ   MRVA+G+   +  K    +E Y+ LS  +F 
Sbjct: 174 YNYMGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHEDDINK---VIETYDYLSERYFT 230

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+ T++ Q+SSCFL T+ DD + GI+G L++ A+++KY+GG+G +   +R   
Sbjct: 231 HASPTLFNACTKNQQMSSCFLLTLNDDSIKGIYGTLKKCALISKYAGGIGINVHCIRAKD 290

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                    + G+I  LK+ ND A+ V+QGG KR GA   YLE WH D+ +FL+L++N G
Sbjct: 291 TDDTYDTDATNGLISVLKLYNDIAIYVDQGGNKRPGAFAVYLEPWHADIFDFLELKRNIG 350

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D   R  D+  A W+PDLFM+RV  +  W+L  P E   L D++G EF   Y  YE++  
Sbjct: 351 DGNLRARDLFYALWVPDLFMERVFDDEVWSLMCPYESPGLADVWGDEFNELYTRYEKE-- 408

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
            G  K  R++ A  +W  +L    ETG P++ +KD CN +S  QH+G +  SNLCTEI  
Sbjct: 409 -GRYK--RQVQARDVWVTILRSQVETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTEIVE 465

Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            SS EE AVCNL SI  N+  +     FD+DKL + ++   R LD VID+N + I + K+
Sbjct: 466 YSSPEEVAVCNLASIALNMFVNTNKKTFDFDKLKTVVKIVTRNLDKVIDVNFYPIPETKR 525

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR IG+G+ G   A  L+  P+ S EA E+  +  E + + A+ AS ELA E+G Y
Sbjct: 526 SNRRHRPIGIGVQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTY 585

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +++GS   +G+   D   +            T    WDELK ++   G+RNS  +A  P
Sbjct: 586 ETYEGSPVSKGILQYDMWNV----------KPTDLWDWDELKTKIAKHGVRNSLLIAPMP 635

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TA+ A I G ++SI+    N+YV+  +SG+F ++N  L+ +L  R LW + M +++  + 
Sbjct: 636 TASTAQILGNNESIEAYTSNIYVRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANF 695

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GS+ NIERIPDDLK+++ T +EI    ++E A+ R  +IDQ+QSLN+++ +PS +KL  +
Sbjct: 696 GSVQNIERIPDDLKELYKTVWEISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSM 755

Query: 889 YRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
           +   W  GLKT  YYLR++ A      +V+KS L+
Sbjct: 756 HFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLQ 790


>gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Callithrix jacchus]
          Length = 711

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/623 (41%), Positives = 382/623 (61%), Gaps = 22/623 (3%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L+ L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PT
Sbjct: 67  LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123

Query: 358 LFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I G
Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +
Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-----R 298

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHR 418

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G Y +++GS
Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGS 478

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A 
Sbjct: 479 PVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQ 528

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I
Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648

Query: 895 MGLKT-TYYLRSRSATSVEKSTL 916
            GLKT  YYLR+R A +  + TL
Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTL 671


>gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein
          Length = 771

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/761 (36%), Positives = 435/761 (57%), Gaps = 42/761 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL    +    +  +  + +Y+G++  +L+T     + T   + P+YA + AR 
Sbjct: 22  IRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLAAEIAATCTTQHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EEGVKARLLHESMMDFDLVY- 280
            +  L +E         +K     M+ L+      Y+  + G  + ++    MD    Y 
Sbjct: 82  AVSNLHKET--------KKLFSEVMEDLF-----NYVNPKNGKHSPIISSITMDIVNKYK 128

Query: 281 --LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + YERDF++ Y G + L   Y L IN   +E PQ   MRVA+G+   + +    
Sbjct: 129 DKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQWDIDS--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  + DD + GI+  L+  A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QGG KR G +  YLE WH
Sbjct: 246 GGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+L  PDE   L +++G 
Sbjct: 306 SDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLDNVWGD 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y  YER+     I     I A  +W+ ++    ETG P+I +KD CN +S QQ++
Sbjct: 366 EFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G +  SNLCTEI   + + E AVCNLGS+ L     + +FD+ KL   ++  VR L+ +I
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFVIDGRFDFLKLKVVVKVIVRNLNKII 480

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA +I  +  E I + A+ 
Sbjct: 481 DINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDINKKIFETIYYGALE 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA++ G Y ++ GS    G+   D   L   V  +L         W+ LK +++T 
Sbjct: 541 ASCELAEKEGPYDTYVGSYASNGILQYD---LWNVVPSDL-------WNWEPLKDKIRTY 590

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  P    A I G ++S++P   N+Y +  +SG+F VVN  L+  L +R LW
Sbjct: 591 GLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A+ R  +IDQ+QS+N++
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750


>gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia
           profundicola AmH]
 gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia
           profundicola AmH]
          Length = 812

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 300/842 (35%), Positives = 439/842 (52%), Gaps = 127/842 (15%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + ++  +G     +  ++    + AC GL+ V    +  +      DG++ ++++  L
Sbjct: 3   PGITVIKRNGRREPLDISKIRKYTKAACEGLEGVDYTELELDAKLQFRDGITTAEIQDTL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+   PN+  V AR  L  L   V            +H       EYF +  E
Sbjct: 63  IKTAVDKIDIDRPNWNYVAARLFLYDLYHRVTGFT------GYNH-----LKEYFQKGEE 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
            G   R+L      FDL  L   LK ERD  F YLG++ LYDRY +   NG  IE+PQ  
Sbjct: 112 AG---RILLGLKEKFDLDDLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELPQQL 168

Query: 321 FMRVAMGLALKETE-----KEKRA--------------VEFYNLLSSFHFMCSTPTLFNS 361
           FM VAM LA  ET      +E+RA               +FY+++S F  M +TPTL N+
Sbjct: 169 FMGVAMFLAQNETNYESIPEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTLSNA 228

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
            T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D + +R LG+ I      +
Sbjct: 229 RTTRHQLSSCYVGSMNDNIEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHKNAA 288

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GVIP+LK+ ND A+AV+Q G RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD+  
Sbjct: 289 GGVIPWLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHDLFP 348

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A WI DLFMKRV ++A WTLF P EV DL DLYG+EFE  Y  YE   +  +      I 
Sbjct: 349 ALWISDLFMKRVQEDALWTLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----ETIK 404

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------- 593
           A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI  N+         
Sbjct: 405 AKELWKKILLEYYETGNPFLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYKVKV 464

Query: 594 -----------SEETAVCNLGSINLL----------AHFANNQFDYDKLASTIRTAV--- 629
                       EE      G + L           A      +  +K+    +TAV   
Sbjct: 465 TFEDGSFNMYDEEEDVTVEHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAVCNL 524

Query: 630 ----------------------RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                                 R+LDNVID+N + + K K +N  +RAIGLG MG    L
Sbjct: 525 ASVNLSKVNTPEKIKEVVPVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQML 584

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               I + S E +++ DE  E IS++AI  S EL++E+G Y  F+GS W +G+ PIDS  
Sbjct: 585 AEKQIFWGSEEHLKLIDEVFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPIDSAN 644

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             A+   E  +    +  W+ L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+
Sbjct: 645 EEAKRLVERDLFSAMQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVYK 703

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             + + N+SG   VV                               +  +  +    +  
Sbjct: 704 RKWYEENLSGLIPVV-------------------------------VPNLSAETYMFYTP 732

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           A+E+D   L+++A+ RQKW+DQ QSLN+++  D+ SG+ L+ IY   W +GLK+ YYLRS
Sbjct: 733 AYELDQTVLVKAAAIRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYYLRS 792

Query: 906 RS 907
           +S
Sbjct: 793 QS 794


>gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila]
 gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila SB210]
          Length = 2928

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/749 (36%), Positives = 426/749 (56%), Gaps = 38/749 (5%)

Query: 176  VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
            V+  +++ +    MYDG+  ++L+     ++  +    P+Y+   AR  +  L +E  ++
Sbjct: 2119 VNMDLIIQKVVNGMYDGIHTTELDELAAETAAYMTIIHPHYSLFAARIAVSNLHKETSSS 2178

Query: 236  VYKKPQKATHHEMQCLYPEYFCRYIEE-GVKARLLHESMMDF---DLVYLANDLKYERDF 291
             ++         +  LY      Y+++ G +A L+ + + +    +   +   + Y+RD+
Sbjct: 2179 FFET--------ISALY-----NYVDKSGRQAGLIAKDVYEIVKENAEAIEKVINYDRDY 2225

Query: 292  AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
             +++ G + L   Y L I+G   E PQ   MRV++G+  ++ E    A   YNL+S   F
Sbjct: 2226 TYDFFGFKTLERSYLLKIHGKIAERPQHMLMRVSIGIHKRDLES---AFRTYNLMSEKWF 2282

Query: 352  MCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTLFNSGT  PQ+SSCFL  +  D + GI+  L+++A+++K +GG+G     +R  
Sbjct: 2283 THATPTLFNSGTPKPQMSSCFLLQMKGDSIEGIYDTLKQSALISKSAGGIGISVHNIRAR 2342

Query: 411  GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT 469
             ++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH D+ EFL L+KN 
Sbjct: 2343 DSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIFEFLQLKKNH 2402

Query: 470  GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            G + +R  D+  A WIPDLFMKRV  +  WTL  P+E   L D++G EFE  Y  YE   
Sbjct: 2403 GKEEQRARDLFYALWIPDLFMKRVISDGTWTLMCPNECPGLPDVWGDEFEALYTKYE--- 2459

Query: 530  DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
               E K  + I+A  LW+ ++    ETG P++ +KD CN +S QQ++G + SSNLCTEI 
Sbjct: 2460 --NEGKGRKTINARELWQDIVDSQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEII 2517

Query: 590  LNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
              +S +E AVCNL SI+L+     N ++DY KL    +     L+ VID N + + +AK 
Sbjct: 2518 EYTSPDEVAVCNLASISLVKFVKENGEYDYQKLYEISKVVTFNLNKVIDENYYPVIEAKN 2577

Query: 649  SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            SN  HR IG+G+ G   A   + I + S EA  + ++  E I F A  AS+E+A + G Y
Sbjct: 2578 SNMRHRPIGIGVQGLADAFIKMRISFESDEAQIVNEKIFETIYFGACEASMEIAIKEGPY 2637

Query: 709  SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +FKGS   +G    D    L   +  L         WD LK+++   GMRNS  ++  P
Sbjct: 2638 ETFKGSPASKGQLQFD----LWNYKPHLCG-----YDWDGLKQKIVEHGMRNSLLISPMP 2688

Query: 769  TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TA+ + I G  +S +P   NLY +  ++G+F  +N  LV +L +R+LW+ ++ + L   +
Sbjct: 2689 TASTSQILGNCESFEPYTSNLYTRRVLAGEFVCINPHLVQDLIERNLWNPSIKNQLLAFN 2748

Query: 829  GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
            GS+  +  IPDD+K+++ T +E+    +I  A  R  +IDQ+QSLN+++ +PS  K+  +
Sbjct: 2749 GSVSQVPDIPDDIKQLYKTVWEVSQKAIINLAVGRSPFIDQSQSLNIHISDPSYSKITSM 2808

Query: 889  YRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            +  AW  GLKT  YYLRSR A    K TL
Sbjct: 2809 HFYAWEKGLKTGMYYLRSRPAADPIKFTL 2837


>gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/616 (41%), Positives = 380/616 (61%), Gaps = 22/616 (3%)

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT 
Sbjct: 74  YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 130

Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G
Sbjct: 131 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNG 190

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A
Sbjct: 191 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 250

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A
Sbjct: 251 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKA 305

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL
Sbjct: 306 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 365

Query: 603 GSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ 
Sbjct: 366 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 425

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+ 
Sbjct: 426 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 485

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++S
Sbjct: 486 QYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNES 535

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDL
Sbjct: 536 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 595

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  
Sbjct: 596 KQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 655

Query: 901 YYLRSRSATSVEKSTL 916
           YYLR+R A +  + TL
Sbjct: 656 YYLRTRPAANPIQFTL 671


>gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
 gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
          Length = 788

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 309/829 (37%), Positives = 445/829 (53%), Gaps = 112/829 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G     N ++++  +  A  GL+ ++   +  E +    DG+   D++  LI
Sbjct: 6   EVRVIKRNGRTEPLNVEKIQKYIISATEGLEGINKDELELEAH-FFKDGIKTQDIQQTLI 64

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+   PN++ V AR  L  L  +V   +  K               +   Y E 
Sbjct: 65  KTAIDHIDVHAPNWSFVAARLFLFDLYHKVSGFMGYK---------------HLAEYFEV 109

Query: 263 GVK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320
           G +  R++      FDL  L + L+ +RD  F YLG++ L+DRY L     R IE+PQ  
Sbjct: 110 GEREGRIVRGFKEKFDLDRLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E++  ++A+ FY +LS F  MC+TPTL N+ T + QLSSC++ + PD++
Sbjct: 170 FMAIAMFLAQNESDPNEKALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNI 229

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + ++ A+L+KY GG+G D++ VR LG++I G    S G IPFLK+ ND A+AV+Q
Sbjct: 230 EGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQ 289

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH DV EF+DLRKN+GD+RRR HD+  A WI DLFM+RV ++  WT
Sbjct: 290 LGTRKGAIAVYLEIWHKDVLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P   SDL + YG  F   Y  YE      E  + ++I A  LW+K+LT  FE+G P+
Sbjct: 350 LFDPYVCSDLTECYGDVFTQKYLAYENN----ENIIKQRIEARTLWKKILTNYFESGLPF 405

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEI--TLNSSSEETAVCNL-GSINLL--------- 608
           + FKD  N      H G++ SSNLCTEI     SS  + AV  + GS+            
Sbjct: 406 LGFKDNANNAHLNGHTGLIRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTD 465

Query: 609 AHFANNQ--------------FDYDKLASTIRTAV------------------------- 629
           AH                   F   K+A   + AV                         
Sbjct: 466 AHITKKANKLTSNDSLKGKRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAV 525

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDN+ID+N + I+KAK++N   RAIG G+MG   AL    I + S E     D  ME 
Sbjct: 526 RMLDNIIDLNFYPIDKAKRTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEK 585

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+  I  S +LAQERG+Y+ F+ S W +G+FP+D     A    E++ ++ +   W  L
Sbjct: 586 ISYTTILESCKLAQERGSYAHFENSEWSRGIFPMDKAKSQAW---EISPHKPT-CDWGGL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K +VK  G+RN   MAIAPT++I+ + G +Q+I+P YQ  + + N+SG   VV    V E
Sbjct: 642 KAQVKQHGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV----VPE 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L   + W                            + +A++IDP  +I  A+ RQKWIDQ
Sbjct: 698 L-SLETW--------------------------HYYTSAYDIDPKAIIRLAAVRQKWIDQ 730

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            QSLNL+L  D+ SGK L  IY  AW +GLK+TYYLR+ S  S+E   L
Sbjct: 731 GQSLNLFLRPDQASGKLLHEIYHLAWKLGLKSTYYLRTASP-SLETGAL 778


>gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
 gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
          Length = 757

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/769 (35%), Positives = 437/769 (56%), Gaps = 56/769 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTL---IEKEPNYAKVT 220
           ++  C  L    + +  + +E  K +Y+ +   D++T   F+S  +   I +  +Y  + 
Sbjct: 22  IDNLCYDLDKNFIDANYLANEIIKGLYNNIRTKDIDT---FASELIAGFITRHYDYDTLA 78

Query: 221 ARFLLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           +R ++ KL +E       V+ T+Y    P    H  M     EY  + + +       H 
Sbjct: 79  SRIVVSKLHKETTESFSDVIHTLYNYINPNNGNHLPM---VSEYLYQQVNK-------HR 128

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331
            ++D       N + Y+RD+++ Y G++ L   Y L  N   IE PQ   MRV++G+   
Sbjct: 129 DIID-------NVIAYDRDYSYSYFGIKTLEKSYLLKQNNKIIERPQHMLMRVSLGIHGG 181

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQEN 390
           + +     +E YN LS   F+ ++PTLFN+GT  PQ+SSCF+  + DD + GIF  L++ 
Sbjct: 182 DIDD---VIETYNYLSEKWFIHASPTLFNAGTPLPQMSSCFILPIKDDSIEGIFDTLKQC 238

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVC 449
           A+++K++GG+G   + +R  G +I G NGKS G++P L++ N+T   +NQGG KR GA+ 
Sbjct: 239 ALISKHAGGIGLSISNIRAKGTYISGINGKSNGIVPMLRIYNNTVRYINQGGDKRPGAMS 298

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            Y+E WH D+ +FL LRKN G++  RT D+ TA W+PDLFM+RV ++  W+L  P E   
Sbjct: 299 IYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWSLMCPCECPG 358

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L D++G +F   Y  YE +     I   R     +LW+ ++    E G P+I +KD CN 
Sbjct: 359 LCDVWGNDFNKLYIEYETKKKIKAIVKAR-----SLWKSIIEAQIEQGTPYILYKDSCNK 413

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +S Q ++G + SSNLCTEI   S+ +E AVCNLGSI+L     NN F +DKL    +  V
Sbjct: 414 KSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVNNNVFMFDKLRIITKILV 473

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           + L+ +IDIN + + ++ +SN  HR IG+G+ G      LL   + S EA  +  +  E 
Sbjct: 474 KNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAKILNIQIFET 533

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I + A+ +S ELA+  G Y ++  S   +G+   D              N T    W+EL
Sbjct: 534 IYYAALESSCELAKIYGPYETYNDSPASKGILQYDM----------WLKNPTDLWDWNEL 583

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           KKR+ T G+RNS  +A  PTA+ + I   ++SI+P   N+Y +  +SGDF VVN  L+ E
Sbjct: 584 KKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQVVNPHLLRE 643

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L  R++W+  + + +  H+GSI +++ +PD++K+I+ T +EI    ++E A+ R  +IDQ
Sbjct: 644 LISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMAADRGAFIDQ 702

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           +QS+ +Y+D P+  KL  ++   W +GLKT  YY+R++SA++  K T++
Sbjct: 703 SQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751


>gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 785

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 272/772 (35%), Positives = 429/772 (55%), Gaps = 64/772 (8%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +E  C  L    V    ++ +    +Y G++ ++L+T    ++ +++   P+Y  + AR 
Sbjct: 29  IESLCYNLNADYVHPSTIVVKVVAGLYPGVTTAELDTLAAETAASMMTLHPDYGVLAARI 88

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---- 279
            +  + ++                      + F R ++E   A L+  SM  +D+V    
Sbjct: 89  AISNMHKQT--------------------DDSFARTMKELYAAGLI--SMFHYDVVCRHG 126

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L   + +  DF + Y G++ L   Y +HI    +E PQ   MR A+G+     E    
Sbjct: 127 RTLDEAIVHANDFNYSYFGIKTLERSYLMHIKDRLVERPQYLLMRCALGI---HGENIDA 183

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
            +E YN +S  +F  +TPTLF++ T  PQLSSC+L T+  D + GIF  + + A ++K +
Sbjct: 184 VIETYNYMSRHYFTHATPTLFSAATPKPQLSSCYLLTIKGDSIDGIFRTVADCAAISKTA 243

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G +   +R  G+ I GTNGKS G++P L+V N+ A  V+QGG KR G+   YLE WH
Sbjct: 244 GGIGLNVHDIRARGSPIDGTNGKSNGLVPMLRVFNNVARYVDQGGGKRMGSFAIYLEPWH 303

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLDLRKN G + +R  D+  A WIPDLFM+RV Q+  W+L  P +   L +++G+
Sbjct: 304 ADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQDGDWSLMCPHKCPCLSEVWGE 363

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            FE  YE+YER+      +  R + A ALW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 364 SFEHLYEHYERKG-----RAVRTVKARALWHAIIESQVETGTPYMMYKDACNRKSNQQNL 418

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVR 630
           G +  SNLCTEI   ++ +E AVCNL S+ L     +        FD+++L   +    R
Sbjct: 419 GTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVVSGTPDRPKHFDFEQLRRIVHVVTR 478

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + + +A++SN  HR IG+G+ G      L+ +PY S EA E+     E I
Sbjct: 479 NLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADTFVLMGMPYESDEARELNRRIFETI 538

Query: 691 SFHAISASVELAQERGAYSSFKGS-----LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            F A+  S +LA+E G Y SF GS        Q ++P+D       V D+   N      
Sbjct: 539 YFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMWPVD-------VDDKPMWN------ 585

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WDEL+  ++  G+RNS  +A  PTA+ A I G ++S +P   N+YV+  +SG+F V+N  
Sbjct: 586 WDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSNIYVRRVLSGEFQVINRH 645

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  L    LW E+M + +    GS+ +IE IP ++++++ T +EI    +I+ A+ R +
Sbjct: 646 LVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTVWEISGRRIIDMAADRGR 705

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+++A +  + T+
Sbjct: 706 YIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKAAANAIQFTV 757


>gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum
           PN500]
          Length = 868

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 282/791 (35%), Positives = 432/791 (54%), Gaps = 45/791 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-----VLSETYKNM 189
           SK  +    K+ ++  DGT  S    ++   ++  C     ++ ++     V  +    +
Sbjct: 11  SKEQSTPNSKMYVIKRDGTKASVQYDKITQRLQSLCDLEPKLNGEVIDPSEVTQKVASGV 70

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + G+  ++L+     ++  +  K P+Y  + AR  +  L ++  ++  +  +K       
Sbjct: 71  FPGVKTTELDNLAAETAAYMSTKHPDYGVLAARISVSNLHKQTSSSFLETVEK------- 123

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYF 306
               ++     + G  A L+ + + +   ++   L   + Y RDF +++ G + L   Y 
Sbjct: 124 ----QHSFTNPKTGQPAPLVSDELYNLVKIHHKRLEEAIDYRRDFEYDFFGFKTLERSYL 179

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             IN   IE PQ   MRV++G+   + +    A+E YNLLS   F  +TPTLFNSGT  P
Sbjct: 180 HRINDIIIERPQQMLMRVSIGIHGDDIDS---AIETYNLLSQRLFTHATPTLFNSGTPSP 236

Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           Q+SSCFL  + +D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++
Sbjct: 237 QMSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLV 296

Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W
Sbjct: 297 PMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALW 356

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + DLFM+RV  +  W LF P+E   L D +G EF   YE YE           R I A  
Sbjct: 357 VSDLFMERVENDDVWNLFCPNEAPGLADCWGDEFRALYEKYENTPGLSR----RTIKAQD 412

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  ++    ETG P+  +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL S
Sbjct: 413 LWFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLAS 472

Query: 605 INLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           I L  +   N      +FD+  L    +T  R L+ +ID N + + +A+ SN  HR IG+
Sbjct: 473 IALPKYVRENKETGKPEFDHQYLFEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGI 532

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G       L +P+ S  A  +  E  E I F A++AS ELA+  G Y SFKGS   +
Sbjct: 533 GIQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPASK 592

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G             +D   +  + R  W  LK+++ + G+RNS  +A  PTA+ + I G 
Sbjct: 593 GTLQ----------QDFWNVTPSPRWDWTSLKQKIISTGLRNSLLIAPMPTASTSQILGN 642

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +++ +P   N+Y +  ++G+FTVVN  L+ +L   DLW   M + +  H GSI NIE IP
Sbjct: 643 NEAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAHRGSIQNIEDIP 702

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           DDLK+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+ +KL  ++  AW  GLK
Sbjct: 703 DDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTSMHFYAWKKGLK 762

Query: 899 T-TYYLRSRSA 908
           T  YYLR+R+A
Sbjct: 763 TGMYYLRTRAA 773


>gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit
           [Cryptosporidium muris RN66]
 gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Cryptosporidium muris RN66]
          Length = 809

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/736 (37%), Positives = 428/736 (58%), Gaps = 37/736 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+  S+L+     +   +    P+++K+ AR  +  L             K TH ++
Sbjct: 50  MYSGIKTSELDELASQTCAYMAASHPDFSKLAARISISNL------------HKNTHSDI 97

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305
             +  +        G  A LL +++ +F +     L + + + RDF ++Y   + L   Y
Sbjct: 98  FEVANQLISFKDVHGNPAPLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFKTLERSY 157

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L ++   +E PQ   MRV+ G+     +    A+E Y LLS  +F  +TPTLFN+GT  
Sbjct: 158 LLRVDDKIVERPQHLLMRVSCGIHYGNIDA---AIETYELLSQKYFTHATPTLFNAGTLR 214

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCF+  + DD + GIF  L++ A ++K +GGLG   + +R  G++I GTNG+S G+
Sbjct: 215 PQMSSCFILKMSDDSIDGIFDTLKKCANISKTAGGLGVAISNIRAAGSYIRGTNGRSNGL 274

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V NDTA  V+QGG KRKGA+  YLE WH D+ EF+++RKN G +  R  D+  A 
Sbjct: 275 IPMLRVYNDTARYVDQGGGKRKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPAL 334

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFM+RV ++A WTL  PDE   + D++G +F+  YE+YE++  RG     + I A 
Sbjct: 335 WIPDLFMERVEKDANWTLMCPDECPGMQDVWGDQFKELYEHYEKEG-RGR----KTIKAQ 389

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +LW  +L    ETG P+I +KD  N +S QQ++G + SSNLCTEI   +SS+E AVCNL 
Sbjct: 390 SLWFALLQSQIETGTPFICYKDAANRKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLA 449

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L       N +FD+ KL   ++ A+R L+ VID   + I + ++SN  HR +GLG+ 
Sbjct: 450 SIGLPRFVDRENKKFDFKKLYEVVKVAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQ 509

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      +L  PY S +A ++  E  E I + A+ AS ELA++ G Y +F+GS   +G+ 
Sbjct: 510 GLADCFMILRYPYESKDARKLNIEIFETIYYAALDASCELAEKYGPYETFQGSPASRGLL 569

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D    L  V+    +       WD LK+++   G+RNS  +A  PTA+ + + G ++S
Sbjct: 570 QFD----LWNVQPSSGL-----WNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNES 620

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+N+L +  LWDE +  ++  ++GS+ NIE IP D+
Sbjct: 621 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDI 680

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           + ++ T +EI    +I+ A+ R  +I Q+QSLN+Y+   +  KL  ++   W  GLKT +
Sbjct: 681 RDLYKTVWEIRQKAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGS 740

Query: 901 YYLRSRSATSVEKSTL 916
           YYLR++SA +  + T+
Sbjct: 741 YYLRTQSAANPIQFTI 756


>gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens]
          Length = 787

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 273/771 (35%), Positives = 426/771 (55%), Gaps = 35/771 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL  + +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K  H  M     +      +E
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK-LHKHMHPKTKKPAALISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H+  ++  +VY       +RDF ++Y G + L   Y + ++G+  E PQ   M
Sbjct: 120 TYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + +D + 
Sbjct: 173 RVALGI---HGDDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N  W+
Sbjct: 290 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    ETG P+
Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H         F
Sbjct: 405 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L  PY S
Sbjct: 465 DFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D    L  V+   
Sbjct: 525 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFD----LWNVKP-- 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N++ +  ++
Sbjct: 579 ----SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI    +
Sbjct: 635 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           ++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R
Sbjct: 695 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTR 745


>gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
 gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
          Length = 903

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/783 (35%), Positives = 438/783 (55%), Gaps = 56/783 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDPAAITMKVISGVYHGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRRE-------VLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++       V++ +Y    P+     + Q +  +Y  + I++       H   +
Sbjct: 82  AVSNLHKQTKKQFSAVVSDLYTYVNPKNG---KSQPMISDYIYKIIQD-------HAEEL 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           +  +VY       +RDF +++ G + L   Y L ING   E PQ   MRVA+G+  ++ E
Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDIE 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
           K   A+E Y+ +S  +F  ++PTLFN+GT +PQ+SSCFL  + +D + GI+  L+  A++
Sbjct: 185 K---AIETYDYMSQKYFTHASPTLFNAGTPNPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D
Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  Y  YER     E K    + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEELYTRYER-----ENKGRETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+ KL        R
Sbjct: 417 QKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGEFDFHKLHEVTMVVTR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +I++N + +E+A++SN  HR IGLG+ G   A   L +P+ SPEA ++  +  E I
Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFESPEAKKLNTQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+++S ++A+E G Y++++GS   +G    D  G+            +    W  LK
Sbjct: 537 YHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTP----------SDLWDWASLK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 DKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW E M + +    GSI  I  IP++ K ++ T +EI    +I+ A+ R  +IDQ+
Sbjct: 647 VDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + T   VD +  A+ VT
Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFT---VDQE--ALQVT 761

Query: 930 DPN 932
           D N
Sbjct: 762 DTN 764


>gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera]
          Length = 791

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 283/800 (35%), Positives = 429/800 (53%), Gaps = 74/800 (9%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L+     ++  +    P+YA + AR         V++ ++K 
Sbjct: 38  LVSQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARI--------VVSNLHKN 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y  +  R    G+KA L+   + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETIKEMYNHFNER---SGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L I G  +E PQ   MRV++G+   + +    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKIQGKVVERPQHMLMRVSVGIHKDDIDS---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L+E A+++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEH 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A W+PDLFM+RV  N  W+LF P E   L D +G+EF   Y  YER+      
Sbjct: 324 RARDLFYALWVPDLFMERVQSNGHWSLFCPXEAPGLADCWGQEFVDLYTQYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A  LW ++L    ETG P++ FKD CN +S QQ++G + SSNLCTEI   +S+
Sbjct: 379 KAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSA 438

Query: 595 EETAVCNLGSINLLAHF--------------------ANNQFDYDKLASTIRTAVRVLDN 634
           +ETAVCNL SI L  +                      N  FD+DKLA         L+ 
Sbjct: 439 DETAVCNLASIALPRYVREKGVPMESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNK 498

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID+N +  +                 G      LL + + SPEA ++  +  E I +HA
Sbjct: 499 IIDVNYYPFQ-----------------GLADTFILLGMAFDSPEAQQLNKDIFETIYYHA 541

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA   G Y ++ G    +G+   D  G+            +SR  WD L+K + 
Sbjct: 542 LKASCELAMREGPYETYDGCPVSKGILQPDMWGVTP----------SSRWDWDALRKMIS 591

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  
Sbjct: 592 ENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 651

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW   + + + Y +GS+  +  IP+DLK I+ T +EI    L++ A  R  +IDQ+QSLN
Sbjct: 652 LWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLN 711

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K T+      L     T  + 
Sbjct: 712 IHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD--TSILQERTKTADDD 769

Query: 934 STHSLGIPSSCTSDTECEVC 953
            T    +  S T+  EC  C
Sbjct: 770 DTKMAQMVCSLTNREECMAC 789


>gi|18266787|sp|O61065|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum]
 gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium
           parvum]
          Length = 803

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/729 (36%), Positives = 422/729 (57%), Gaps = 37/729 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G+  S+L+     +   +     +++K+ AR     L             K T  ++
Sbjct: 46  LYSGIKTSELDELASQTCAYMAATHNDFSKLAARISTSNL------------HKNTSSDI 93

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
             +  + +     +G  A L+ + + DF   +   + + + + +DF ++Y   + L   Y
Sbjct: 94  GDVASQLYNFKDNQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSY 153

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L I+   +E PQ   MRV+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  
Sbjct: 154 LLKIDNKVVERPQHLLMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPR 210

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL  +P+D + GIF  L + A ++K +GGLG   + +RG G++I GTNG+S G+
Sbjct: 211 PQMSSCFLLRIPEDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGL 270

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V NDTA  ++QGG KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A 
Sbjct: 271 IPMLRVYNDTARYIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPAL 330

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFM+RV ++  WTL  PDE   L D++G +F+  YE YE+Q  RG     + + A 
Sbjct: 331 WVPDLFMERVEKDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQ 385

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P+I +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL 
Sbjct: 386 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLA 445

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L       N  FD+DKL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ 
Sbjct: 446 SIGLPKFVDKNNKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQ 505

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      +L +PY S  A ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+ 
Sbjct: 506 GLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGIL 565

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D  G+  +         +    WD LK R+   G+RNS  ++  PTA+ + I G ++S
Sbjct: 566 QFDMWGVTPD---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNES 616

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+
Sbjct: 617 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDI 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           ++++ T +EI    +I+ A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  
Sbjct: 677 RELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGI 736

Query: 901 YYLRSRSAT 909
           YYLR++SAT
Sbjct: 737 YYLRTQSAT 745


>gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
 gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
          Length = 804

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/729 (36%), Positives = 422/729 (57%), Gaps = 37/729 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G+  S+L+     +   +     +++K+ AR     L             K T  ++
Sbjct: 47  LYSGIKTSELDELASQTCAYMAATHNDFSKLAARISTSNL------------HKNTSSDI 94

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
             +  + +     +G  A L+ + + DF   +   + + + + +DF ++Y   + L   Y
Sbjct: 95  GDVASQLYNFKDNQGCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSY 154

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L I+   +E PQ   MRV+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  
Sbjct: 155 LLKIDNKVVERPQHLLMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPR 211

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL  +P+D + GIF  L + A ++K +GGLG   + +RG G++I GTNG+S G+
Sbjct: 212 PQMSSCFLLRIPEDSINGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGL 271

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           IP L+V NDTA  ++QGG KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A 
Sbjct: 272 IPMLRVYNDTARYIDQGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPAL 331

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLFM+RV ++  WTL  PDE   L D++G +F+  YE YE+Q  RG     + + A 
Sbjct: 332 WVPDLFMERVEKDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQ 386

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG P+I +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL 
Sbjct: 387 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLA 446

Query: 604 SINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L       N  FD+DKL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ 
Sbjct: 447 SIGLPKFVDKNNKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQ 506

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      +L +PY S  A ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+ 
Sbjct: 507 GLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGIL 566

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D  G+  +         +    WD LK R+   G+RNS  ++  PTA+ + I G ++S
Sbjct: 567 QFDMWGVTPD---------SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNES 617

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+
Sbjct: 618 FEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDI 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           ++++ T +EI    +I+ A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  
Sbjct: 678 RELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGI 737

Query: 901 YYLRSRSAT 909
           YYLR++SAT
Sbjct: 738 YYLRTQSAT 746


>gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Pichia angusta DL-1]
          Length = 816

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/750 (36%), Positives = 425/750 (56%), Gaps = 37/750 (4%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLE--TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           VS  ++L +    + + L+  +L   TA + +S T +  + +Y  + AR L+  L+++V 
Sbjct: 41  VSIDVILDKVVSGLPESLTVQELLDLTAEVSASLTTVHYDHSY--LAARVLVRHLQKQVC 98

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
            +  +   +     M+   P  +  +  + + A  +HE +++     L   + ++RD   
Sbjct: 99  GSFSENVNR-----MRQYRPSQYRSF--KSLIAADVHE-IVNKHADVLNKAIDFDRDLEL 150

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +Y G + +   Y L ++G   E PQ  FMRVA+G+     E   R +E Y L+S  +F+ 
Sbjct: 151 DYFGFRTMERSYLLKMDGRPCETPQYLFMRVAVGIHKGNIE---RVLETYRLMSQKYFIH 207

Query: 354 STPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTLFN+GT  P LSSCFL  +  D + GIF  + ++A+++K +GG+G   + +R  G+
Sbjct: 208 ASPTLFNAGTETPNLSSCFLLAMDGDSINGIFRTIHKSALISKAAGGIGIHVSNIRAAGS 267

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P ++V N TA  V+QGG KR GA C YLE WH DV EFLDLRKN G 
Sbjct: 268 YISGTNGTSNGLVPMVQVFNSTAKYVDQGGNKRPGAFCMYLEPWHADVFEFLDLRKNHGK 327

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A WIPDLFM++V ++  W LFS D+   L D YG EF   Y  YER+   
Sbjct: 328 EETRARDLFYALWIPDLFMEKVEKDQEWCLFSEDQSPGLSDSYGDEFVKLYNRYEREG-- 385

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +  RK+ A  LW  +L    ETG+P++ +KD CN +S QQ++G + SSNLC EI   
Sbjct: 386 ---RYIRKVRAQKLWHAILVAQTETGNPFLLYKDACNKKSNQQNLGTIKSSNLCCEIVEY 442

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           SS+EETAVCNLGS+ L +   +N+    FD+  L    +T  R LD VID+  + + +A+
Sbjct: 443 SSNEETAVCNLGSLALPSFVHDNKGERKFDFKFLHDVCKTLARNLDTVIDVGSYPLPEAE 502

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            SN  HR I +G+ G       L +P+ SPE+ ++     E I   A+  S ELA+  G 
Sbjct: 503 VSNKRHRPIAIGVQGLADVFFKLRMPFGSPESRKLNILIFETIYHAALETSAELAEIYGP 562

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y S+ GS   +GV   D                +    W+ LK ++   G+RNS  +A+ 
Sbjct: 563 YDSYAGSPISKGVLQYDFWN----------AKPSDMWDWEGLKAKIHRNGVRNSLLVALM 612

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+++L    LW   M +++   
Sbjct: 613 PTASTSQIFGFTECFEPITSNMYSRRVLSGEFQVVNRYLIDDLVDLGLWGPEMKNEILRM 672

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           +GS+  IE IP D K+I+ T +EI    LI+ A+ R  +IDQ+QS+NL++  P+  KL  
Sbjct: 673 EGSVQAIESIPADTKEIYKTVWEIQQRALIDMAADRAPFIDQSQSMNLFMRNPTMSKLTS 732

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++  AW  GLKT  YYLR+++A S  K T+
Sbjct: 733 MHFYAWKKGLKTGIYYLRTQAAASAIKFTV 762


>gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
 gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
          Length = 889

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 274/784 (34%), Positives = 433/784 (55%), Gaps = 57/784 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRREVLTT---------VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++              Y  P+     + Q +  ++  + I++       H   +
Sbjct: 82  AVSNLHKQTKKQFSAVVEDLYTYVNPKNG---KSQPMISDHVYKIIQD-------HAEEL 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           +  +VY       +RDF +++ G + L   Y L ING   E PQ   MRVA+G+     E
Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGI---HGE 181

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              +A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+  A++
Sbjct: 182 DIPKAIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D
Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE+YE+Q ++G       + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYESYEKQ-NKGR----ETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+ KL    +   R
Sbjct: 417 QKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQVVTR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ S EA ++  +  E I
Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+++S ++A+E G Y +++GS   QG+   D   +            T    W  LK
Sbjct: 537 YHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTP----------TDLWDWASLK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 AKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW E M + +    GSI  I  IP++ K ++ T +EI    +I+ A+ R  +IDQ+
Sbjct: 647 VDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKL- 923
           QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D  + 
Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNIA 766

Query: 924 NAVP 927
            A+P
Sbjct: 767 KALP 770


>gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 795

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 274/776 (35%), Positives = 431/776 (55%), Gaps = 56/776 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL    V    +  +    +Y G++   L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLAAETAAYMTTTHPDYAILAARI 81

Query: 224 LLEKLRREV---LTTV------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L ++     + V      Y  P+     + Q +  ++  + I++       H   +
Sbjct: 82  AVSNLHKQTKKQFSAVVEDLYSYVNPKNG---KSQPMISDHVYKVIQD-------HAEEL 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           +  +VY       +RDF +++ G + L   Y L ING   E PQ   MRVA+G+     E
Sbjct: 132 NSAIVY-------DRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGI---HGE 181

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
              +A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+  A++
Sbjct: 182 DIPKAIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSIDGIYDTLKTCALI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E   L D
Sbjct: 302 EPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMCPNECPGLAD 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +YG EFE  YE+YE+Q ++G       + A  LW  +L    ETG+P++ +KD CN +S 
Sbjct: 362 VYGDEFEALYESYEKQ-NKGR----ETVRAQKLWYAILEAQTETGNPFMLYKDACNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVR 630
           Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+ KL    +   R
Sbjct: 417 QKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQVVTR 476

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ S EA ++  +  E I
Sbjct: 477 NLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQIFETI 536

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+++S E+A+E G Y +++GS   QG+   D   +            T    W  LK
Sbjct: 537 YHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTP----------TDLWDWASLK 586

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L
Sbjct: 587 AKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDL 646

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW E M + +    GSI  I  IP++ K ++ T +EI    +I+ A+ R  +IDQ+
Sbjct: 647 VDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQS 706

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A+     +V++  LK  D
Sbjct: 707 QSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVAD 762


>gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Pichia angusta
           DL-1]
          Length = 862

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/781 (34%), Positives = 430/781 (55%), Gaps = 35/781 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V   C GL  + V    +       +Y G++  +L+   
Sbjct: 1   MYVLKRDGRKEPVRFDKITARVSRLCYGLDPEHVEPVAITQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++  T  + +     +H +     +      +E
Sbjct: 61  AETAAYMTTIHPDYATLAARIAISNLHKQT-TKQFSQVVDQLYHYINPKNGKPSPMISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +    H   ++  +VY       +RDF++ Y G + L   Y L I+G   E PQ   M
Sbjct: 120 TYRIVQEHADELNSAIVY-------DRDFSYNYFGFKTLERSYLLKIDGKVAERPQHMVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +     +E YNL+S   F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVAIGI---HGDDIPSVIETYNLMSQKFFTHASPTLFNAGTPHPQMSSCFLVAMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKAAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KR GA   Y+E WH D+ +F+D+RKN G +  R  D+  A WIPDLFM+RV QNA WT
Sbjct: 290 GNKRPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG EF+  Y  YE++  RG     + + A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLADVYGDEFKELYTRYEKEG-RGR----QTVKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616
           + +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L A   ++     +
Sbjct: 405 MLYKDACNSKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNTSWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   + L+ +ID N + + +A++SN  +R I +G+ G       L +P+ S
Sbjct: 465 NFEKLHQITKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA E+  +  E I   A+ AS ELA   G Y +F+GS   QG+   D  G         
Sbjct: 525 PEARELNIQIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWG--------- 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK R++  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 576 -KKPTDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LW+++M + +   +GS+ N+  +P +LK ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQKSI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS+N++L  P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 L 916
           +
Sbjct: 755 V 755


>gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
 gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
          Length = 850

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 416/746 (55%), Gaps = 55/746 (7%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKK 239
           +Y+G++  +L+     ++       P+YA + AR  +  L +E   +          Y  
Sbjct: 17  IYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARIAISNLHKETKKSFSQVIQDLHDYVN 76

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
           P+      M            EE     + H  ++D  ++Y       ERDF + + G +
Sbjct: 77  PKTGRPSSMIS----------EETFNTVMKHRELLDSAIIY-------ERDFHYNFFGFK 119

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            L   Y L ING   E PQ   MRVA+G+  ++ E    A+E YN +S   F  ++PTLF
Sbjct: 120 TLERSYLLRINGKVAERPQHMLMRVAVGIHGEDIES---AIETYNYMSEKAFTHASPTLF 176

Query: 360 NSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+GT +PQ+SSCFL ++ +D + GI+  L+  AM++K +GG+G +   +RG G++I GTN
Sbjct: 177 NAGTPNPQMSSCFLVSMKEDSIEGIYDTLKTCAMISKTAGGIGLNIHNIRGTGSYIAGTN 236

Query: 419 GKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           G S G++P L+V N+TA  V+QGG KR GA   YLE WH DV EF+DLRKN G D  R  
Sbjct: 237 GVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHPDVFEFVDLRKNHGKDEVRAR 296

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           D+  A W+PDLFMKRV +N  W+L  P E   L D YG+EFE  YE YER+      +  
Sbjct: 297 DLFLAMWVPDLFMKRVEKNEDWSLMCPAEAPGLADCYGEEFEELYERYEREG-----RAK 351

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LW  +L    ETG+P++ +KD  N +S Q+++G + SSNLCTEI   SS EET
Sbjct: 352 RSVKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIKSSNLCTEIMEYSSPEET 411

Query: 598 AVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNL SI L        A+  +++ +L    +   + L+ +IDIN + +  A++SN  H
Sbjct: 412 AVCNLASIALPTFIEGTGASKIYNFQRLHDVAKVVCKNLNRIIDINYYPVPSARRSNMRH 471

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G   A  ++  P+ S EA  +  +  E I   A+  S ELA++ G Y +++G
Sbjct: 472 RPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQYGTYETYQG 531

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTAT 771
           S   QG+   D              NRT    WD   LK ++   G+RNS  +A  PTA+
Sbjct: 532 SPASQGILQYD------------MWNRTPTDLWDWASLKAKIAQHGLRNSLLLAPMPTAS 579

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G ++  +P   N+Y++  ++G+F VVN +L+ EL +  LW+++M   +  H GSI
Sbjct: 580 TSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIAHGGSI 639

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NI  IPD +K ++ T +EI    +I+ A+ R  ++ Q+QSLN++L  PS  +L  ++  
Sbjct: 640 QNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLTSMHFY 699

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTL 916
            W  GLKT +YYLR+R A S  + T+
Sbjct: 700 GWKKGLKTGSYYLRTRPAASAIQFTV 725


>gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo
           laibachii Nc14]
          Length = 782

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/772 (35%), Positives = 427/772 (55%), Gaps = 45/772 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++ S+L+     ++     + P+++K+ AR          ++ ++K   K     +
Sbjct: 47  VYPGVTTSELDELAAETAAYCSTQHPDFSKLAARI--------AISNLHKNTNKVFSENI 98

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRY 305
           Q  Y     ++    V A L+ E +    +     L + +  +RDF ++Y G + L   Y
Sbjct: 99  QLFYEN---KHDTTKVPAPLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYFGFKTLEKSY 155

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L +NG   E PQ   MRVA+G+     E  +  +E Y  +S   F  +TPTLFN+GT  
Sbjct: 156 LLRVNGKVCERPQHMIMRVAVGI---HKENLEAVLETYECMSQKFFTHATPTLFNAGTPR 212

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQLSSCFL ++ DD + GI+  L++ A ++K++GG+G   + +R   ++I GTNG S G+
Sbjct: 213 PQLSSCFLLSMQDDSIDGIYDTLKQCACISKWAGGIGVSISNIRCTNSYIRGTNGSSNGI 272

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L+V NDTA  V+QGG KRKG+   YLE WH D+ EFL+LRKN G++  R  D+  A 
Sbjct: 273 VPMLRVFNDTARYVDQGGGKRKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYAL 332

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542
           WIPDLFMKRV  N  W+LF P+E   L++ +G EF+  Y  YE       + + RK + A
Sbjct: 333 WIPDLFMKRVEDNQEWSLFCPNEAPRLYETWGNEFDALYLKYE------SMNIARKTVKA 386

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S QQ++G + SSNLC EI   S S+E AVCNL
Sbjct: 387 QQLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNL 446

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S+ L       +F + KL    +   + L+ +IDIN + I +A+ SN  HR IG+G+ G
Sbjct: 447 ASVALSKFVYQKEFQFTKLYEITKIVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQG 506

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                 L+ +P+ S  A ++  E  E + F A+ AS+ELA+E G Y S+ GS   +G F 
Sbjct: 507 LADTFLLMGLPFESKAARDLNKEIFETMYFAAMEASMELARELGPYESYSGSPVSKGTFQ 566

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D   +  +         + R  W  LK++V   G+RNS  +A  PTA+ A I G  +SI
Sbjct: 567 FDMWQVTPD---------SGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESI 617

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N++ +  ++G+FT+VN +L+ EL + +LW   + + +    GS+ NI  IP ++K
Sbjct: 618 EPFTSNMFNRRVLAGEFTIVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVK 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
           + + T +EI    +++ A+ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  Y
Sbjct: 678 EKYKTVWEIKQKSILDMAADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMY 737

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YLR+R      + T   VD K      +  +S+   L        + EC VC
Sbjct: 738 YLRTRPRADAIQFT---VDQK------SLDDSALAKLSQTQDVDEEEECLVC 780


>gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a]
          Length = 766

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 282/746 (37%), Positives = 412/746 (55%), Gaps = 43/746 (5%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKA 243
           + +Y G++  +L+     +   +    P+Y+ + AR  +  L +E     +T+ K+ +  
Sbjct: 45  QGIYSGVTTRELDNLAAETCAYMSINHPDYSVLAARICVSNLYKETESCYSTLVKQLRDY 104

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
            + E     P          V A L+     + + V  A D   E    ++Y   + L  
Sbjct: 105 VNPETGEWAPL---------VSAELVKVVTENREQVQEALDGFAE---TYDYFAYKTLEK 152

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y L +NG   E P    MRVA+G+     +    A++ Y  + S  +  +TPTLFN+GT
Sbjct: 153 SYLLKMNGKIAERPHQLLMRVAIGI---HGDDITSALQTYRDMGSKRYTMATPTLFNAGT 209

Query: 364 RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             PQ+SSCFL T  DD + GIF  L+  A ++KY+GGLG     VRG G++I GTNG S 
Sbjct: 210 PTPQMSSCFLMTCKDDSISGIFDTLKNCACISKYAGGLGVSIHDVRGRGSYIRGTNGVSN 269

Query: 423 GVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++P L+V N+TA  V+Q GG+RKG++  YLE WH D+E FLDL+KN G++  R  D+  
Sbjct: 270 GLVPMLRVFNNTARYVDQGGGRRKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFY 329

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFM+RV +N  W+L  P+E   L +++GKEF+  YE YE   +    KV   + 
Sbjct: 330 ALWVPDLFMRRVEKNQKWSLMCPNECPGLANVWGKEFDALYEKYEASPN----KVRATLD 385

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW  +L +  ETG P+I +KD  N +S QQH+GV+ SSNLCTEI   +S +E AVCN
Sbjct: 386 ARKLWNHILDVQVETGTPYILYKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCN 445

Query: 602 LGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           L SINL +     + A    DY  L     + VR L+ VID N + + +A+ SN  HR +
Sbjct: 446 LASINLSSVIRHPYTAEAYVDYTALVGLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPV 505

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ GF  AL +L  PY SPEA  I     E I + A+ AS++ AQ  G + SF GS  
Sbjct: 506 GIGVQGFADALIMLRKPYDSPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPL 565

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            QG F  D  G+            T    W+ L+  +   G+RNS   A  PTA+ A I 
Sbjct: 566 SQGRFQFDLWGV----------QPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQIL 615

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G ++S +P   N+Y +  ++G+F VVN  L+ +L   DLWD+ M + L  H+GS+ NI R
Sbjct: 616 GNNESFEPFTTNVYNRRVLAGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIAR 675

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP  +K ++ T +EI    +++ A+ R  ++ Q+QS+N+++ EP+  KL  +    W  G
Sbjct: 676 IPRWVKDLYKTVWEIPQRVILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRG 735

Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDG 921
           LKT  YYLR+R       S   GVDG
Sbjct: 736 LKTGMYYLRTRPRAD---SIQFGVDG 758


>gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
 gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
          Length = 786

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 275/747 (36%), Positives = 425/747 (56%), Gaps = 51/747 (6%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           IV  +    +Y G++ S L+     ++ ++    P+YA + AR         V++ ++KK
Sbjct: 38  IVAQKVCAGVYKGVTTSQLDELAAETAASMTTSHPDYAILAARI--------VVSNLHKK 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
            +K+    ++ +Y     R    G+KA L+   + D    +   L +++ Y+RDF ++Y 
Sbjct: 90  TKKSFSETVKEMYSHVDER---SGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L +NG  +E PQ   MRV++G+  ++ E    A++ Y+L+S   F  ++P
Sbjct: 147 GFKTLERSYLLKVNGRVVERPQHMLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + +D + GI+  L+E A+++K +GG+G     +R   ++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLLCMKEDSIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRK            DV ++LDL+KN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRK------------DVFDWLDLKKNHGKEEN 311

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+    WIPDLFM+RV  N+ W+LF P+E   L D +G+EFE  Y  YER+      
Sbjct: 312 RARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEEFESLYTRYEREG----- 366

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  R +SA  LW  +L    ETG+P++ FKD CN +S QQ++G +  SNLCTEI   +S 
Sbjct: 367 RAKRSLSAQKLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSP 426

Query: 595 EETAVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDN---VIDINCHTIEKAKKSN 650
            ETAVCNL SI L         + + KL    +    V +N   +IDIN + ++ AK+SN
Sbjct: 427 SETAVCNLASIALPRFVREQGINSETKLVDCFQVTTVVTENLNKIIDINYYPVDTAKRSN 486

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  LL +P+ S EA ++  +  E I +HA+  S  LA+  G Y +
Sbjct: 487 LRHRPIGIGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSVLAELYGVYET 546

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           + GS   +GVF  D   ++           + R  W  LK+ V   G+RNS  +A  PTA
Sbjct: 547 YPGSPVSKGVFQPDMWNVIP----------SGRWDWPALKEMVARHGVRNSLLVAPMPTA 596

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I G ++  +P   N+Y +  +SG+F VVN  L+N+L    +W   + + +  ++GS
Sbjct: 597 STSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGS 656

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I +IE IPDDLK+I+ T +EI    +++ A  R  +IDQ+QSLN+++++P+  KL  ++ 
Sbjct: 657 IQSIEGIPDDLKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHF 716

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTL 916
            AW  GLKT  YYLRS++A    K T+
Sbjct: 717 HAWSGGLKTGMYYLRSQAAADAIKFTV 743


>gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767]
 gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii]
          Length = 861

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 28/651 (4%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD    Y G++ L + Y L ++    E PQ  F+RVA+G+   + +     +E Y L+S 
Sbjct: 145 RDLELTYFGIKTLQNSYLLKLDNVVSETPQFMFLRVAIGIHGDDIDS---VIETYELMSQ 201

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F+ ++PTLFNSGT +  LSSCFL  + DD + GI+  L ++A+++K SGG+G     +
Sbjct: 202 KYFIHASPTLFNSGTEYNYLSSCFLLAMEDDSIDGIYKTLHKSALISKASGGIGLHVHNI 261

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           RG G++I  +NG S G++P L+V N+TA  V+QGG KR GA   Y+E WH D+   LDL+
Sbjct: 262 RGSGSYIASSNGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYIEPWHCDIISILDLK 321

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+    WIPDLFM+RV Q+  W+LFSPD    L D YG  F+  YE YE
Sbjct: 322 KNHGKEEMRARDLFYGLWIPDLFMERVKQDLDWSLFSPDITPGLSDCYGDAFKTLYEKYE 381

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   K  R I A  LWR +L    ETG P++ FKD CN +S Q+++G + SSNLC 
Sbjct: 382 ESG-----KAIRTIKAQKLWRAILECQTETGGPYMLFKDACNSKSNQRNLGTIKSSNLCC 436

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           EI   SS EETAVCNLGS+ L +   N+   ++D+DKL +  +   + L+ +IDI  + I
Sbjct: 437 EIIEYSSPEETAVCNLGSLALPSFIKNSNELEYDFDKLHTVTKVLAKNLNKIIDITKYPI 496

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E AK SN  +R I +G+ G       L +P+ S +A  +  +  E I   A+  S+ELA 
Sbjct: 497 ESAKFSNMRNRPIAVGVQGLADLFLELRLPFDSNQAKVLNTQIFETIYHAAVEVSIELAI 556

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNS 761
           + G Y +FKGS   +G+F  D           L  ++ S+L   WDELK + KT+G+RNS
Sbjct: 557 KDGPYDTFKGSPISEGLFQFD-----------LWNHKPSQLYSDWDELKLKAKTLGVRNS 605

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ +L    +W+ +M 
Sbjct: 606 LLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLSGEFQVVNKYLMKDLIDLGIWNSSMK 665

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           + +   +GSI NI  IP +LK+++ T +EI    +IE A+ R K+IDQ+QS+N++L +P+
Sbjct: 666 NKIILENGSIQNIPSIPKELKQLYKTVWEISQKVIIELAADRGKFIDQSQSMNIHLQDPT 725

Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG-KLNAVPVTD 930
             KL   +  AW  GLKT  YYLR+++AT   + T+   +  KL+  P  D
Sbjct: 726 FGKLTSSHFYAWEKGLKTGMYYLRTQAATRAIQFTVDLAESRKLDVQPEAD 776


>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
 gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
          Length = 838

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/770 (35%), Positives = 430/770 (55%), Gaps = 52/770 (6%)

Query: 166 VEEACSGLQ-DVSSKIVLS-ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  D    + ++ +    +Y G++  +L+     ++ TL  +  +YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPVAITLKVINGLYTGVTTQELDNLAAETAATLTTEHADYAILAARL 81

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y    +    +   +  E++              + +MD 
Sbjct: 82  AVSNLHKETKKHFSDVMADLYNMENEFLKTKSPMISDEHY--------------KIIMD- 126

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L + + Y+RDF + Y G + L   Y L I G  +E PQ   MRVA+G+   + +  
Sbjct: 127 NADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLMRVAVGIHGLDIDA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNLLS  +F  ++PT+F + TR PQLSSCFL T+ DD + GI+  L++ A+++K
Sbjct: 186 --AIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSIDGIYDTLKQCALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 SAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  W L  P +   L + +
Sbjct: 304 WHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMCPHDCPGLPETW 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  Y  YE +      +  RK+ A  LW  ++    ETG P++ +KD CN +S QQ
Sbjct: 364 GEEFEKLYTTYENEG-----RYIRKVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQ 418

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVL 632
           ++G +  SNLCTEI   SS +E AVCNL SI  N+     +  +D+ KL    +   + L
Sbjct: 419 NIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVK-PDKSYDFQKLKEVSKIVTKNL 477

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S EA ++  +  E I +
Sbjct: 478 NKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEAQKLNQQIFETIYY 537

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELK 750
            A+ AS E+A++ G Y ++ G    +G+   D              N+     WD   LK
Sbjct: 538 GALEASCEIAEKDGTYETYDGCPVSKGILQYD------------MWNKAPSDLWDWAPLK 585

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L
Sbjct: 586 EKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDL 645

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            + +LWD+ M + +   +GSI +I+ IP  +++++ T +EI     I+ A+ R  +IDQ+
Sbjct: 646 TELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKMAADRGAFIDQS 705

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+  V
Sbjct: 706 QSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKV 755


>gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum]
          Length = 942

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/746 (36%), Positives = 421/746 (56%), Gaps = 52/746 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE- 247
           ++ G+  ++L+     ++  +  K P+YA + AR  +  L             K TH   
Sbjct: 141 VFPGVKTTELDNLAAETAAYMSTKHPDYAVLAARIAVSNL------------HKQTHESF 188

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND--------LKYERDFAFEYLGLQ 299
           ++ +  ++     + G  A L+ +     +++ LAN         +KY RDF +++ G +
Sbjct: 189 LETVKLQHGYVSPKTGAPAPLVSD-----EILALANKHVDRIEAAIKYTRDFEYDFFGFK 243

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            L   Y   +N   IE PQ   MRV++G+   + +    A++ Y+ LS+ +F  +TPTLF
Sbjct: 244 TLERSYLHRVNDMIIERPQHLLMRVSLGIHGDDIDA---AIDTYDQLSNRYFTHATPTLF 300

Query: 360 NSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+GT  PQ+SSCFL  + DD + GI+  L++ A+++K +GG+G     +R   ++I GTN
Sbjct: 301 NAGTNSPQMSSCFLVQMKDDSIEGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTN 360

Query: 419 GKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           G S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDL+KN G +  R  
Sbjct: 361 GTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLKKNHGKEEMRAR 420

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           D+  A W+ DLFM+RV QNA W+LF P+E   L D YG +F   Y +YE+          
Sbjct: 421 DLFYALWVSDLFMERVEQNAEWSLFCPNEAPGLADCYGDKFRDLYLSYEQTPGLAR---- 476

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW  ++    ETG P+I +KD CN +S Q+++G +  SNLCTEI   +S++E 
Sbjct: 477 KVVKAQDLWFAIIDSQIETGTPYILYKDACNEKSNQKNLGTIQCSNLCTEIIQYTSADEV 536

Query: 598 AVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           AVCNL SI L          A   FD++ LA   R   R L+ +ID N + +E+A++SN 
Sbjct: 537 AVCNLASIALPKFVKRSSPSAVASFDHNHLAEITRIITRNLNKIIDRNFYPVEEARRSNM 596

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR  G+G+ G       L +P+ SP A  +  E  E I + ++ AS +LA+  G Y +F
Sbjct: 597 RHRPTGIGIQGLADVFIALRMPFDSPAAAVLNKEIAETIYYASLDASCQLAERDGPYETF 656

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS   QG+   D    + +V+       ++R  W  LK+R+   G+RNS  +A  PTA+
Sbjct: 657 AGSPASQGILQFD----MWDVQP------SARWDWAALKQRIVKHGLRNSLLVAPMPTAS 706

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G ++  +P   N+Y +  ++G+FTVVN  L+ +L    LW   M + +  + GS+
Sbjct: 707 TSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQLLQDLMALGLWTPEMKNQIIANRGSV 766

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            N++ IPDDLK+++ +A+EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  
Sbjct: 767 QNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPNFAKLTSMHFY 826

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTL 916
           AW  GLKT  YYLR+R+A    + T+
Sbjct: 827 AWKKGLKTGMYYLRTRAAADAIQFTV 852


>gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
 gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
          Length = 878

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/668 (40%), Positives = 387/668 (57%), Gaps = 29/668 (4%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--K 337
           YL   ++ ERD  F Y G++ L   YFL I+    E PQ  F+RVA+GL  K  +K   +
Sbjct: 133 YLDKLVRPERDMNFTYFGMRTLCKSYFLQIDNVVAETPQYLFLRVAIGLHGKLDDKNALQ 192

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
           R  E Y+L+S  + + S+PTLF++GT +  LSSCFL  + +D + GIF  L   A+++K 
Sbjct: 193 RVSEIYDLMSEKYLIFSSPTLFSAGTNNNFLSSCFLMGIKEDSIDGIFKTLHSAALISKG 252

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           SGGLG     +R  G+ I  +NG S G++P LKV N+TA  V+QGG KR GA   Y+E W
Sbjct: 253 SGGLGIHVHNIRSNGSAISSSNGTSNGLVPMLKVFNNTARYVDQGGNKRPGAFAIYIEPW 312

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ E L+LRKN G D  R  D+  A WIPDLFMKRV  N  W+LFSP +   L D+YG
Sbjct: 313 HGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWSLFSPSKAPGLSDVYG 372

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  Y+ YE      E      I A  LW  +L    ETG P++ +KD CN +S Q +
Sbjct: 373 EEFESLYQKYEE-----EDLACTTIEARKLWMHILQAQTETGMPFMLYKDACNRKSNQMN 427

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
           +G + SSNLC EI   SS EETAVCNL S+ L      N+     FD+ KL    +   R
Sbjct: 428 LGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANENGNVAFDFKKLHKVTKILAR 487

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD VID+  + I+ AK SN  HR I +G+ G       L +P+ S EA  +  +  E I
Sbjct: 488 SLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELRLPFDSAEAATLNSQIFETI 547

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              AI +S+EL++E+G Y SF+GS   +G    D      +  D+          WDELK
Sbjct: 548 YHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPDFFDD----------WDELK 597

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +LV +L
Sbjct: 598 EQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYNRRVLSGEFQVVNKYLVKDL 657

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +   +W++A+   +  ++GS+ NI+ IP  LKK++ T +EI    ++  A+ R ++IDQ+
Sbjct: 658 RALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEISQKHIVRLAAERGRFIDQS 717

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL--KGVDGKLNAVP 927
           QS+N++L  P+   L   +  AW  GLKT  YYLR+++A    + T+  + ++ KL ++ 
Sbjct: 718 QSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAARAIQFTVDKQEIEAKLKSMV 777

Query: 928 VTDPNSST 935
           V  P  ST
Sbjct: 778 V--PEVST 783


>gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/829 (33%), Positives = 449/829 (54%), Gaps = 58/829 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   ++  
Sbjct: 11  KLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
              ++  L  K P++A + AR  +  L +E       V+  +Y    +     M+ +   
Sbjct: 71  AAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDVIYDLYNMSNERNQRRMKIISDF 130

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           ++   ++   +               L N +K++RD+ + Y G + L   Y L ING  +
Sbjct: 131 HYGVVMKHADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVV 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRV++G+  ++ +    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL 
Sbjct: 176 ERPQHLLMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLV 232

Query: 375 TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVAN 432
               D    FG  ++  A +++ SGG+G     +   G         +S G++  LKV N
Sbjct: 233 ANKSDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLN 292

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D A  V+QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+R
Sbjct: 293 DLAQYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T 
Sbjct: 353 VEANQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITS 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAH 610
             ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI  N+   
Sbjct: 408 QIETGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVK 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N ++D++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+
Sbjct: 468 -PNGEYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLM 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             P+ SPE+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D   +  
Sbjct: 527 RFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNV-- 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY
Sbjct: 585 --------KPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E
Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           +    +++ A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A 
Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756

Query: 910 -----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                +V KSTL       N    T+ N +     +  S  +   C +C
Sbjct: 757 DPIQFTVNKSTLSS-----NIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
 gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
          Length = 746

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/767 (35%), Positives = 420/767 (54%), Gaps = 48/767 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EE 262
           ++  L    P+Y+K+ AR          +++++K         M  LY      Y+  + 
Sbjct: 61  TATYLTMTHPDYSKLAARI--------AVSSLHKMTSNKFSSVMDSLY-----NYVNTKT 107

Query: 263 GVKARLLHESMMD--------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           G  + L+ + +++        FD V     + YE+D  ++  G + +   Y   ING  +
Sbjct: 108 GKWSPLIADDIIECIRSNAEVFDDV-----INYEKDLEYDIFGYKTMEKSYLSRINGDIV 162

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+   + +    A+E Y LLS+  F  +TPT++N+GTR+PQ+SSCFL 
Sbjct: 163 ERPQHMLMRVAIGIHCPDVDA---AIETYKLLSARVFTHATPTMYNAGTRNPQMSSCFLL 219

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            + DD + GIF  L+  A+++K +GG+G     VR   ++I GT G S G++P L+V ++
Sbjct: 220 KMKDDSIEGIFDTLKNCALISKNAGGIGVSIHNVRAQNSYIRGTGGYSNGLVPMLRVFDN 279

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKR
Sbjct: 280 TARYVDQGGGKRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKR 339

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V     W+LF P E   L D++G ++   YE YE +      K  + I A  LW  ++  
Sbjct: 340 VEAGKNWSLFCPHECPGLSDVWGDDYVALYEKYESEG-----KARKTIPAQKLWFAIMDS 394

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L A   
Sbjct: 395 QIETGTPYMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK 454

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +  FD+  L      A   LD VID N + I +A++SN  HR IGLG+ G      +L +
Sbjct: 455 DGTFDHQHLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKM 514

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + SP+A  +  E  E + F A++AS +LA+ +G YS+++GS   QG F  D   +   V
Sbjct: 515 AFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTPSV 574

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                     R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +
Sbjct: 575 ----------RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSR 624

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI 
Sbjct: 625 RVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEIS 684

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
              LI+ A+ R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 685 MRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 732

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/745 (36%), Positives = 412/745 (55%), Gaps = 51/745 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +   C GL  + + +  V       +Y+G++  +L+     +   +    P+YA + AR 
Sbjct: 22  ISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE--GVKARLLHESMMDFDLVY- 280
            +  L        +K+  K     ++ LY     RY+    G  A ++ + +  +++V  
Sbjct: 82  AISNL--------HKQTTKQFSKVVEDLY-----RYVNAATGKPAPMISDDV--YNIVME 126

Query: 281 ----LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+  ++ E  
Sbjct: 127 NKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEA- 185

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + +D + GI+  L+E A+++K
Sbjct: 186 --ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISK 243

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLET 454
            +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE 
Sbjct: 244 TAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEP 303

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D Y
Sbjct: 304 WHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCY 363

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YE++  RG     + I A  LW  +L    ETG P++ +KD CN +S Q+
Sbjct: 364 GDEFEALYTRYEKEG-RG-----KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQK 417

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTA 628
           ++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++      +++ KL    +  
Sbjct: 418 NLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVV 477

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+ S EA  +  +  E
Sbjct: 478 TRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFE 537

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   ++ AS ELAQ+ G Y +F+GS   QG+   D       + D+          WD 
Sbjct: 538 TIYHASMEASCELAQKDGPYETFQGSPASQGILQFD-------MWDQKPYGMWD---WDT 587

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +SG+F VVN +L+ 
Sbjct: 588 LRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLR 647

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI    +I  A+ R  +ID
Sbjct: 648 DLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID 707

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAW 893
           Q+ SLNL+L  P+  KL  ++   W
Sbjct: 708 QSHSLNLFLRAPTMGKLTSMHFYGW 732


>gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1504

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/749 (36%), Positives = 428/749 (57%), Gaps = 45/749 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +  + +Y G++ ++L++    +   + +  P+++ + AR  +  L            
Sbjct: 41  ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEY 295
            K TH        E +      G  + L+ E +  +++V +  D     + Y+RDF ++Y
Sbjct: 89  HKNTHESFSETITELYNITDSRGRSSPLVSEEV--YNIVKMNADKLDKAIDYDRDFDYDY 146

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            G + L   Y L     +  IE PQ   MRVA+G+   + +    A+E Y L+S+  F  
Sbjct: 147 FGFKTLERSYLLKRPSDKTCIERPQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTH 203

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFNSGT HPQ+SSCFL ++ +D + GI+  L++ AM++K +GG+G   T +R   +
Sbjct: 204 ATPTLFNSGTPHPQMSSCFLLSIKEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATES 263

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH DV EFLDL+KN G 
Sbjct: 264 YIRGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGK 323

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A WIPDLFMKRV  N  WTLF P+E   L D YG+EFE  YE YE+    
Sbjct: 324 EEHRARDLFYALWIPDLFMKRVMANGDWTLFCPNEAPGLQDTYGEEFEALYEKYEKDG-- 381

Query: 532 GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               + RK + A +LW K+L    ETG P++ +KD  N +S Q+++G +  SNLC EI  
Sbjct: 382 ----IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIE 437

Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            +SS+E AVCNL SI  N+        +D+D+L    +   + L+ VID N + + +A+K
Sbjct: 438 YTSSDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVAKVVTKNLNKVIDRNYYPVPEARK 497

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR IG+G+ G   A  L+  PY SPEA+++ ++  E I   A  AS+ELA+  G Y
Sbjct: 498 SNMRHRPIGIGVQGLADAFLLMRYPYESPEALKLNNDIFETIYHAACEASMELAKRDGPY 557

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F+GS   +G+   D   ++ +         + R  W  LK+ +K  GMRNS  +A  P
Sbjct: 558 ETFQGSPASEGILQFDMWDVIPD---------SGRWDWASLKEEIKKNGMRNSLLIAPMP 608

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TA+ A I G +++ +P  QN+YV+  ++G+F  VN  LV++L +  LW++ +   +    
Sbjct: 609 TASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKK 668

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GS+  +E IP +++ ++ T +EI    +++ A+ R  +IDQ+QSLN+++   +  KL  +
Sbjct: 669 GSVQGVEEIPSEIQDLYKTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSM 728

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +   W +GLKT  YYLR+++A    + TL
Sbjct: 729 HFYGWKLGLKTGQYYLRTKAAADAIQFTL 757


>gi|308750952|gb|ADO44435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobacter thermophilus TK-6]
          Length = 792

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 282/790 (35%), Positives = 423/790 (53%), Gaps = 82/790 (10%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++ ++++ AC GL+ V    + ++      +G+S  +++  LI ++   +  E P++  V
Sbjct: 42  KIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYV 100

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----YIEEGVKARLLHESMMD 275
            AR LL  L ++V      K +   +   +   PE F      Y E+G+    L      
Sbjct: 101 AARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSK 160

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE 334
            D   LA+ +K +RD  F Y G+++LYDRY +    G+ IE+PQ  +M ++M LAL E +
Sbjct: 161 EDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKK 220

Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           +E  K    FY+L+S      +TPTL N+   H QLSSCF+ TV DDLY IF  +Q+   
Sbjct: 221 EERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQ 280

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K++GGLG     VR  G+ I    G S GV+P +K+ ND  V V+Q G RKG+    L
Sbjct: 281 ISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITL 340

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------DE 506
           + WH DV +FL+++ N GD+R++ HD++ A  IPD+FMKR+     WTL  P       +
Sbjct: 341 DIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKD 400

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L D YG+EFE  Y+  ER+      K   ++ A  LW+++LT++FETG P+I F+D 
Sbjct: 401 GKNLEDFYGEEFEELYQRLERELPPNAKK---EVDAFELWKRLLTVVFETGEPYIFFRDT 457

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS---------------------SEETAVCNLGSI 605
            N  +P +H GVV+SSNLC EI  N S                     S +  VCNLGSI
Sbjct: 458 ANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSI 517

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL        +  + +   +   VR+LDNVI IN + I++A+ +N  +RAIG+G+  +  
Sbjct: 518 NL-----GKVYTKEDMERVVPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHY 572

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    I + S E ++ A+   E I+++AI  S+ELA+ERG Y  F+GS W +GVF    
Sbjct: 573 CLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGVF---- 628

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            G  AE    ++    + L W EL + VKT G+RN+  +A+ PT + + I G + S+DP 
Sbjct: 629 FGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPI 688

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y + NMSG    V   +      R  W                            +
Sbjct: 689 FAKFYKEENMSGILPQVPPEI-----DRYFWH---------------------------Y 716

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLMGLKTTYYL 903
            +A+ ID  W+I +AS RQKWIDQAQSLNL++D     G  L  +Y  +W +GLKT YY 
Sbjct: 717 KSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYC 776

Query: 904 RSRSATSVEK 913
           RS+S T +E+
Sbjct: 777 RSKSLTEIEE 786


>gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
 gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
          Length = 761

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/773 (34%), Positives = 424/773 (54%), Gaps = 45/773 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG+  +    ++   +     GL  Q +    +  +  K +Y G++ ++L+  
Sbjct: 8   KLYVIKRDGSKQTVLLDKITSKLNRLSYGLNKQFIDPAAITIQVVKTIYAGVTTTELDQH 67

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  +     +YA +  R +++   + V                    P+ F R + 
Sbjct: 68  AAKETANMAYIHDDYALLAGRIMVDDNHKHV--------------------PDSFVRVVA 107

Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           +  K  L+  ++ +    +   L   + Y+RD+ ++Y   + L + Y   ING   E  Q
Sbjct: 108 KLYKHNLVSLALFEVASANADALEAQIDYKRDYEYKYFAYKTLENGYLKRINGRVAERIQ 167

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
              MRVA+G+  ++ +    A+E YNL ++  F  ++PTLF +G   PQLSSCFL T+ +
Sbjct: 168 HMLMRVAIGIHGRDIDA---AIETYNLTANKMFTHASPTLFAAGCPQPQLSSCFLLTLKE 224

Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + G++  L + A ++KY GGLG +    R  G+ I GTNG + GV P L+V N+    
Sbjct: 225 DSIKGMYETLADCAQISKYGGGLGVNVHKARARGSAIRGTNGTASGVEPLLRVYNNCVRH 284

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+QGGKRKGA+  YLE WH D+ +FL+L++N G + ++  D+  A W+PDLFMKRV QN 
Sbjct: 285 VDQGGKRKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQNE 344

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PD    L D+Y  EFE  YE YE      E +   ++ A +L+R ++    ETG
Sbjct: 345 MWSLMCPDRCPGLSDVYSLEFEKLYEQYE-----SENRFTCQVEARSLFRTIIETQVETG 399

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CNI+S Q+++G +  SNLC EI   SSSEE AVCNL S+ +     +  FD
Sbjct: 400 TPYILYKDACNIKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSGVFD 459

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +  L S  +  V+ L+ +IDIN + +E AK+SN  HR +G+G+ G   A  +L +PY S 
Sbjct: 460 FVALKSVTKIVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYESD 519

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A  +  +  E + + A+ AS +LA+  G YSS+  S    GV   D   +         
Sbjct: 520 KAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWNV--------- 570

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T+   W +LK R+   G+RNS  +A  PTAT A I G ++S +P   NLYV+  ++G
Sbjct: 571 -QPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVLAG 629

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DF V+N  LV +L + +L+D+ M + +    GS+  I+RIPDD+K ++ T +E+    LI
Sbjct: 630 DFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKNLI 689

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           + A+ R  +IDQ+QS N+++ +PS   L  ++   W  GLKT  YYLR++ A 
Sbjct: 690 DMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAA 742


>gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 898

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 299/866 (34%), Positives = 446/866 (51%), Gaps = 137/866 (15%)

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +Y G++ ++L+T    ++ TL  K P+YA + AR  +  L +E         +K    
Sbjct: 69  QGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSD 120

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--------YERDFAFEYLGL 298
            M+ LY      Y+    K   LH  M+  + +++  + K        Y+RDF++ + G 
Sbjct: 121 VMEDLY-----NYVNPLNK---LHSPMISKETLHIIRENKARLNSAIIYDRDFSYNFFGF 172

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ING   E PQ   MRVA+G+   + E    A+E YNLLS   F  ++PTL
Sbjct: 173 KTLERSYLLKINGKVAERPQHMLMRVAVGIHQADMEA---AIETYNLLSERWFTHASPTL 229

Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FN+GT   QLSSCFL T+ DD + GI+  L++ A+++K +GG+G   + +R  G++I GT
Sbjct: 230 FNAGTNRSQLSSCFLLTMKDDSIEGIYDTLKQCALVSKSAGGIGLAVSCIRATGSYIAGT 289

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-----------------------------KRKGAV 448
           NGKS G++P L+V N+TA  V+QGG                             +R GA 
Sbjct: 290 NGKSNGLVPMLRVYNNTARYVDQGGNKVRMKVGEQTASRLRNIRDVIQVWLFLGQRPGAF 349

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E  
Sbjct: 350 AVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPSECP 409

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D +G+EFE  Y  YE++      +  R + A  LW  ++    ETG P++ +KD CN
Sbjct: 410 GLTDCWGEEFEELYTRYEKEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 464

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRT 627
            +S QQ++G +  SNLCTEI   +S +E AVCNL SI L  +    + +D+ KLAS  +T
Sbjct: 465 RKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFHKLASVTKT 524

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            V+ L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY SPEA  +  +  
Sbjct: 525 IVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNTQIF 584

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A+ AS ELA E G Y ++ GS   +GV   D  G             T    W 
Sbjct: 585 ETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWG----------KTPTDLWDWT 634

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV------ 801
            LK+++   G+RNS  +A  PTA+ A I G ++S +    N+Y +  +SG+F V      
Sbjct: 635 ALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTRAFR 694

Query: 802 -------------------VNSFLVNELKQRDLWDEAMISDLKYHDGSI----------- 831
                              VN  L+ +L +R LW + M + L  H+GSI           
Sbjct: 695 PSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICCISS 754

Query: 832 ------------------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                              NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSL
Sbjct: 755 TISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSL 814

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVP 927
           N+++ EP+  KL  ++   W +GLKT  YYLR++ A      ++ K TLK    +  A  
Sbjct: 815 NIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLK----EAQAAR 870

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
             + +   ++  +  S  +  EC +C
Sbjct: 871 SEEESKERNAAAVVCSLANKDECMMC 896


>gi|288817345|ref|YP_003431692.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288786744|dbj|BAI68491.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 767

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 282/790 (35%), Positives = 423/790 (53%), Gaps = 82/790 (10%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++ ++++ AC GL+ V    + ++      +G+S  +++  LI ++   +  E P++  V
Sbjct: 17  KIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYV 75

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----YIEEGVKARLLHESMMD 275
            AR LL  L ++V      K +   +   +   PE F      Y E+G+    L      
Sbjct: 76  AARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSK 135

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE 334
            D   LA+ +K +RD  F Y G+++LYDRY +    G+ IE+PQ  +M ++M LAL E +
Sbjct: 136 EDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKK 195

Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           +E  K    FY+L+S      +TPTL N+   H QLSSCF+ TV DDLY IF  +Q+   
Sbjct: 196 EERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQ 255

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K++GGLG     VR  G+ I    G S GV+P +K+ ND  V V+Q G RKG+    L
Sbjct: 256 ISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITL 315

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------DE 506
           + WH DV +FL+++ N GD+R++ HD++ A  IPD+FMKR+     WTL  P       +
Sbjct: 316 DIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKD 375

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L D YG+EFE  Y+  ER+      K   ++ A  LW+++LT++FETG P+I F+D 
Sbjct: 376 GKNLEDFYGEEFEELYQRLERELPPNAKK---EVDAFELWKRLLTVVFETGEPYIFFRDT 432

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS---------------------SEETAVCNLGSI 605
            N  +P +H GVV+SSNLC EI  N S                     S +  VCNLGSI
Sbjct: 433 ANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSI 492

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL        +  + +   +   VR+LDNVI IN + I++A+ +N  +RAIG+G+  +  
Sbjct: 493 NL-----GKVYTKEDMERVVPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHY 547

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    I + S E ++ A+   E I+++AI  S+ELA+ERG Y  F+GS W +GVF    
Sbjct: 548 CLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGVF---- 603

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            G  AE    ++    + L W EL + VKT G+RN+  +A+ PT + + I G + S+DP 
Sbjct: 604 FGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPI 663

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y + NMSG    V   +      R  W                            +
Sbjct: 664 FAKFYKEENMSGILPQVPPEI-----DRYFWH---------------------------Y 691

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLMGLKTTYYL 903
            +A+ ID  W+I +AS RQKWIDQAQSLNL++D     G  L  +Y  +W +GLKT YY 
Sbjct: 692 KSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYC 751

Query: 904 RSRSATSVEK 913
           RS+S T +E+
Sbjct: 752 RSKSLTEIEE 761


>gi|167947197|ref|ZP_02534271.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 438

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/381 (60%), Positives = 285/381 (74%), Gaps = 6/381 (1%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           IPDLFMKRV +   WTL  P      +  H         +Y   E +A RGEIKVFR + 
Sbjct: 1   IPDLFMKRVAEEGDWTLVLPQRGARPARPHRWLSSR--PSYTACEEKAARGEIKVFRSLK 58

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV LWRKML ML+ETGHPWITFKDPCNIR   QH GVVHSSNLCTEITL+++  E AVCN
Sbjct: 59  AVDLWRKMLGMLYETGHPWITFKDPCNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCN 118

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL AH   N  D  KL  T+ TA+R+LDNVID N +++ +A+ SN  HR +GLG++
Sbjct: 119 LGSVNLAAHVDENGLDIAKLERTVTTAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGIL 178

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+   I YAS +A+  AD SME +S++AI AS ELA ERG YSS++GSLW QGV 
Sbjct: 179 GFQDALYKQRIGYASEQALTFADRSMEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVL 238

Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PIDS+  L + R D L ++++S L WD L+++VKT GMRNSN MAIAPTATI+NI GVSQ
Sbjct: 239 PIDSLQQLKQARGDYLQIDQSSSLDWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQ 298

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNL+VKSN+SG+FTVVN +LV++LK+  LWDE MI+DLKY+DGS+  IER+P +
Sbjct: 299 SIEPTYQNLFVKSNLSGEFTVVNPYLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAE 358

Query: 841 LKKIHATAFEIDPMWLIESAS 861
           LK ++ATAFEIDP WL+ES S
Sbjct: 359 LKVLYATAFEIDPRWLVESGS 379


>gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/780 (33%), Positives = 434/780 (55%), Gaps = 46/780 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++ +
Sbjct: 6   DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65

Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     +Y+ + AR  +  L +E       V+  +Y+   + T      + P++      
Sbjct: 66  MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMI-PDF------ 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   
Sbjct: 119 --------HYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  + +D +
Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQ
Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W
Sbjct: 288 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P
Sbjct: 348 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617
           ++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D
Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L    +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S 
Sbjct: 463 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 522

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ AS ELA + G Y ++KGS   +G    D             
Sbjct: 523 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------G 573

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I
Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             A+ R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTV 753


>gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 840

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/788 (34%), Positives = 441/788 (55%), Gaps = 51/788 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  DG   + + +++   ++   S LQ ++  +++ +  + MY+G++   L+     + 
Sbjct: 24  VLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEGITTVQLDNLAAETC 83

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             +    P Y+ + AR  +  L +E            +  E+      +  +Y   G  A
Sbjct: 84  AYMNLVHPQYSLLAARIAVNNLHKET---------SESFSEVATKLHSFTDKY---GRPA 131

Query: 267 RLLHES-----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            L+ +      M + D++   N++ Y+RD+ +++ G + L   Y L      IE PQ   
Sbjct: 132 PLIADDVYKIIMENKDII--QNEINYDRDYQYDFFGFKTLERSYLLKEGKKPIERPQQLL 189

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRV++G+     E  + A + Y+L+S  +F  +TPTLFNSGT +PQ+SSCFL  + DD +
Sbjct: 190 MRVSIGI---HKEDLQSAFQTYHLMSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSI 246

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G   + +R   ++I GTNG S G++P LKV NDTA  V+Q
Sbjct: 247 EGIYETLKRCALISKSAGGIGLSASKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQ 306

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKG+   YLE WH D+  FL LRKN G + +R  D+    WIPDLFM+RV  ++ W
Sbjct: 307 GGGKRKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDW 366

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P+E   L D YG+EF   Y +YE + + G +     + A  LW++++     TG P
Sbjct: 367 TLMCPNECPGLQDCYGQEFNKLYTDYESK-NMGRVT----MKARQLWQEIIDAQISTGLP 421

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
           ++ +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SINL      ++ FD+
Sbjct: 422 YMLYKDACNSKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINLQKLIKEDKTFDF 481

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           DKL    +     L+ VID+N + +++A+ SN  +R IG+G+ GF  AL  + IP+ S +
Sbjct: 482 DKLLEITKIITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSED 541

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+E+  +  E I + A   S+ELAQ+ G Y +F GS   QG+   D  G+  ++ D    
Sbjct: 542 ALELNAKIFETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMWGVSPKLYD---- 597

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W+ LK+ +   GMRNS  +A  PTA+ + I   ++S +P   N+Y +  ++G+
Sbjct: 598 -------WNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGE 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  +N  LV++L + +LW   + + L  ++GS+ NIE IP+++K ++ T +EI    ++ 
Sbjct: 651 FVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVWEISQKAILN 710

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT----------TYYLRSRSA 908
            A+ R  +IDQ+QSLN+++ EP+  K+  ++  A   G+K            YYLR+R A
Sbjct: 711 LATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYITIKGMYYLRTRPA 770

Query: 909 TSVEKSTL 916
               K T+
Sbjct: 771 ADPIKFTV 778


>gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 802

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/829 (33%), Positives = 449/829 (54%), Gaps = 58/829 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   ++  
Sbjct: 11  KLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
              ++  L  K P++A + AR  +  L +E       V+  +Y    +     M+ +   
Sbjct: 71  AAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDVIYDLYNMSNERNQRRMKIISDF 130

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           ++   ++   +               L N +K++RD+ + Y G + L   Y L ING  +
Sbjct: 131 HYGVVMKHADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVV 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRV++G+  ++ +    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL 
Sbjct: 176 ERPQHLLMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLV 232

Query: 375 TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVAN 432
               D    FG  ++  A +++ SGG+G     +   G         +S G++  LKV N
Sbjct: 233 ANKSDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLN 292

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D A  V+QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+R
Sbjct: 293 DLAQYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T 
Sbjct: 353 VEADQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITS 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAH 610
             ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI  N+   
Sbjct: 408 QIETGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVK 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N ++D++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+
Sbjct: 468 -PNGEYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLM 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             P+ SPE+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D   +  
Sbjct: 527 RFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNV-- 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY
Sbjct: 585 --------KPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E
Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           +    +++ A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A 
Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756

Query: 910 -----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                +V KSTL       N    T+ N +     +  S  +   C +C
Sbjct: 757 DPIQFTVNKSTLSS-----NIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|330945451|gb|EGH47018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/316 (68%), Positives = 257/316 (81%), Gaps = 1/316 (0%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S+GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMN
Sbjct: 1   SKGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMN 60

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRK 539
           TANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE   +  G+IK+F+ 
Sbjct: 61  TANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKT 120

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AV
Sbjct: 121 IQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAV 180

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG
Sbjct: 181 CNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLG 240

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G
Sbjct: 241 IMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKG 300

Query: 720 VFPIDSIGLLAEVRDE 735
           + P+DS  +L E R E
Sbjct: 301 ILPLDSQQILIEQRGE 316


>gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118]
          Length = 885

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 63  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 352 DLFMKRVQEDGSWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI 
Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465

Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I LG+
Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+
Sbjct: 526 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D                     W+ L+K +   G+RNS  MA  PTA+ + I G ++
Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +
Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT 
Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR+++A++  + T+
Sbjct: 756 MYYLRTQAASAAIQFTI 772


>gi|1710392|sp|P50647|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 804

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/662 (40%), Positives = 387/662 (58%), Gaps = 27/662 (4%)

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + DF L++   L  ++ Y   F ++Y G + L   Y L IN   IE PQ 
Sbjct: 109 GRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQH 168

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D
Sbjct: 169 LLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKAD 225

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V
Sbjct: 226 SIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYV 285

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N 
Sbjct: 286 DQGGGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENK 345

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L + +G+EFE  Y  YE + + G+    + + A  LW  +L    ETG
Sbjct: 346 NWTLMCPNECPGLSETWGEEFEKLYTKYEEE-NMGK----KTVLAQDLWFAILQSQIETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQ 615
            P   +KD CN + P +++G +  SNLC EI   +S +E AVCNL SI L         +
Sbjct: 401 VPIYLYKDSCNAK-PIKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKE 459

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++ KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL   Y 
Sbjct: 460 FNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYE 519

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A E+     E + + A+  SV+  Q  G Y S++GS   QG+   D     A+V ++
Sbjct: 520 SDAAKELNKRIYETMYYAALEMSVDWLQS-GPYESYQGSPGSQGILQFDMWN--AKVDNK 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WDELK ++   G+RN   +A  PTA+ + I G ++S +P   N+Y +  +
Sbjct: 577 Y-------WDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVL 629

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    
Sbjct: 630 SGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKN 689

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K 
Sbjct: 690 IIDMAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKF 749

Query: 915 TL 916
           T+
Sbjct: 750 TV 751


>gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 285/787 (36%), Positives = 435/787 (55%), Gaps = 51/787 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +  + +Y G++ ++L++    +   + +  P+++ + AR  +  L            
Sbjct: 41  ITQKVAEGIYPGVTTTELDSLAAETCAYMSQVHPDFSTLAARIAVSNL------------ 88

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND-----LKYERDFAFEY 295
            K TH        E +      G  + L+ E +  ++LV +  D     + Y+RDF ++Y
Sbjct: 89  HKNTHESFSETVTELYNITDSRGRSSPLVSEEV--YNLVLMNADKLDKAIDYDRDFDYDY 146

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            G + L   Y L     +  IE PQ   MRVA+G+   + +    A+E Y L+S+  F  
Sbjct: 147 FGFKTLERSYLLKRPSDKTCIERPQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTH 203

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPTLFNSGT HPQ+SSCFL ++ +D + GI+  L++ AM++K +GG+G   T +R   +
Sbjct: 204 ATPTLFNSGTPHPQMSSCFLLSIKEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATES 263

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE WH DV EFLDL+KN G 
Sbjct: 264 YIRGTNGFSNGIVPMLRVFNDTARYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGK 323

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A WIPDLFMKRV  N  WTLF P+E   L D YG EFE  YE YE+    
Sbjct: 324 EEHRARDLFYALWIPDLFMKRVMANGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDG-- 381

Query: 532 GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               + RK + A +LW K+L    ETG P++ +KD  N +S Q+++G +  SNLC EI  
Sbjct: 382 ----IGRKTVKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIE 437

Query: 591 NSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            +S +E AVCNL SI  N+        +D+ +L    +   + L+ VID N + + +A+K
Sbjct: 438 YTSPDEVAVCNLASIALNMFVDKKTRTYDFGRLHRVAKVVTKNLNKVIDRNYYPVPEARK 497

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR IG+G+ G   A  L+  PY SPEA+++ ++  E I   A  AS+ELA+  G Y
Sbjct: 498 SNMRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNDIFETIYHAACEASMELAKRDGPY 557

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F+GS   +G+   D   +  +         + R  W  LK+ VK  GMRNS  +A  P
Sbjct: 558 ETFQGSPASEGILQFDMWDVTPD---------SGRWDWASLKEEVKKNGMRNSLLIAPMP 608

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TA+ A I G +++ +P  QN+YV+  ++G+F  VN  LV++L +  LW++ +   +    
Sbjct: 609 TASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKK 668

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GS+  +E IP +++ ++ T +EI    +++ A+ R  +IDQ+QSLN+++   +  KL  +
Sbjct: 669 GSVQGVEEIPMEIQALYRTVWEIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSM 728

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +   W +GLKT  YYLR+++A    + TL   D K   V V  P     S   P     D
Sbjct: 729 HFYGWKLGLKTGQYYLRTKAAADAIQFTL---DAK--KVTVESPLKPRSSPLKPQYVQED 783

Query: 948 TE-CEVC 953
            E C  C
Sbjct: 784 EETCIAC 790


>gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/780 (33%), Positives = 430/780 (55%), Gaps = 46/780 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++ +
Sbjct: 6   DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65

Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     +Y+ + AR  +  L  E       V+  +Y+   + T      +          
Sbjct: 66  MTIDHSDYSLLAARLAVSNLHNETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 117

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   
Sbjct: 118 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  + +D +
Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQ
Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W
Sbjct: 288 GGNKRPGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P
Sbjct: 348 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617
           ++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D
Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L    +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S 
Sbjct: 463 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 522

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ AS ELA + G Y ++KGS   +G    D             
Sbjct: 523 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWN---------G 573

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I
Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             A+ R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTV 753


>gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae]
 gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB]
          Length = 885

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 63  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 352 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI 
Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465

Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I LG+
Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+
Sbjct: 526 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D                     W+ L+K +   G+RNS  MA  PTA+ + I G ++
Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +
Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT 
Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR+++A++  + T+
Sbjct: 756 MYYLRTQAASAAIQFTI 772


>gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV]
          Length = 772

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/780 (33%), Positives = 431/780 (55%), Gaps = 46/780 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++ +
Sbjct: 11  DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 70

Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     +Y+ + AR  +  L +E       V+  +Y+   + T      +          
Sbjct: 71  MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   
Sbjct: 123 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 175

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  + +D +
Sbjct: 176 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQ
Sbjct: 233 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 292

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W
Sbjct: 293 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 352

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P
Sbjct: 353 SLMCPMQSPGLADCHGVEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 407

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617
           ++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D
Sbjct: 408 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 467

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L    +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S 
Sbjct: 468 FERLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESD 527

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ AS ELA + G Y ++KGS   +G    D             
Sbjct: 528 AAAELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------G 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 579 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 638

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I
Sbjct: 639 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 698

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             A+ R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 699 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 758


>gi|156541405|ref|XP_001600772.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 797

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 280/799 (35%), Positives = 431/799 (53%), Gaps = 58/799 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKN-MYDGLSESDLETA 201
           K+ ++  +G     N  ++   + + C GL  D    + +++   N +Y G+   +L+  
Sbjct: 6   KMHVLKRNGFKQEVNFDKITQRIRKLCHGLNMDYIDPLAITQCVINGLYPGVKTVELDNL 65

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPE 254
               + T+  K P+YA + AR ++  L +E       V+  +YK     T      +  E
Sbjct: 66  AAEIAATMTTKHPDYAILAARIVISSLHKENRKTFSEVMDDLYKVIDPITKEHKPMISEE 125

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           Y    I +  K RL   S +D+D           RDF F Y G + L   Y   ING  +
Sbjct: 126 Y--NNIIQKHKDRL--NSAIDYD-----------RDFVFNYFGFKTLEKSYLFRINGQVV 170

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP------QL 368
           E PQ   MRVA+ L  ++ EK    +E YN  S  +F  ++PTLF      P        
Sbjct: 171 ERPQDMLMRVAVALHKEDLEK---VIETYNYTSERYFTHASPTLFFCMYYTPTNVQVKNT 227

Query: 369 SSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           S CF LT + D + GIF  L+  A+++K +GG+G     +R  G  I   NG + G++P 
Sbjct: 228 SDCFILTMIEDSIEGIFETLKRCAIISKSAGGIGISVHNIRAKGTAIASNNGFANGLVPM 287

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+T   ++QGG KR GA   YLE WH D+ EFLDL+KN G +  R  ++  A WIP
Sbjct: 288 IRVFNNTVRFIDQGGNKRPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIP 347

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFM+RV  N  W+L  P E   L D++G EF   Y  YE      E +  R+I A  LW
Sbjct: 348 DLFMQRVLDNEKWSLMCPHECPGLPDVWGDEFNKLYIKYEE-----EKRYKRQIVARDLW 402

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI- 605
             +L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   SS  E AVCNL SI 
Sbjct: 403 TAILKAQVETGTPYMLYKDHCNRKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIA 462

Query: 606 -NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            N+        +++ KL   ++T  + LD +ID+N + + +A+KSN  HR +G+G+ G  
Sbjct: 463 VNMFVDVETQYYNFLKLKEVVKTVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLA 522

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA ++  +  E + F A+ AS ELA+E G YSS+ GS   +G+   D
Sbjct: 523 DAFLLMRYPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYD 582

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +            T+   W  LK ++   G+RNS  +A  PTA+ A I G ++S++P
Sbjct: 583 MWNVTP----------TNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEP 632

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F +VN  L+N+L +R+LWD+ M +++  ++GSI N+  I  DLK++
Sbjct: 633 YTSNIYTRRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKEL 692

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    +++ A+ R  +IDQ+QS+N+++ +P+ +KL  ++   W  GLKT  YYL
Sbjct: 693 YKTVWEIPQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYL 752

Query: 904 RSRSAT-----SVEKSTLK 917
           R++ A      +V KS L+
Sbjct: 753 RTKPAANALQFTVNKSLLR 771


>gi|6322123|ref|NP_012198.1| Rnr3p [Saccharomyces cerevisiae S288c]
 gi|730516|sp|P21672|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2;
           AltName: Full=Ribonucleotide reductase DNA
           damage-inducible regulatory subunit 2; AltName:
           Full=Ribonucleotide reductase R1 subunit 2; AltName:
           Full=Ribonucleotide reductase large subunit 2
 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|285812585|tpg|DAA08484.1| TPA: Rnr3p [Saccharomyces cerevisiae S288c]
          Length = 869

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/737 (35%), Positives = 410/737 (55%), Gaps = 36/737 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 47  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 106 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 158

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 159 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 215

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 216 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 275

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 276 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 335

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 336 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 389

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI 
Sbjct: 390 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 449

Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I LG+
Sbjct: 450 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 509

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+
Sbjct: 510 QGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 569

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D                     W+ L+K +   G+RNS  MA  PTA+ + I G ++
Sbjct: 570 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 619

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +
Sbjct: 620 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 679

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT 
Sbjct: 680 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 739

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR+++A++  + T+
Sbjct: 740 MYYLRTQAASAAIQFTI 756


>gi|225850106|ref|YP_002730340.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
 gi|225645946|gb|ACO04132.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
          Length = 804

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/732 (37%), Positives = 400/732 (54%), Gaps = 63/732 (8%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T ++ +   LI K   Y  + A+ LL+ + RE+                    
Sbjct: 55  VTTQELDTLVLKAIEQLIPKHYIYDTLAAKQLLKLINREIDKRFSS-------------- 100

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
              F   IE GV   L    ++DFDL  L + L Y RD   +Y G+  L DRYF     G
Sbjct: 101 ---FKEAIEFGVNENLYKPELLDFDLDRLEDALDYSRDALLDYFGMTTLKDRYFTRDREG 157

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           + IE PQ FFMRVAMG+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC
Sbjct: 158 NIIEKPQWFFMRVAMGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSC 213

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           ++  + D L  I    +E A LAKY+GG+G D T +R  G+ IH  N KS GVIPF+K+ 
Sbjct: 214 YVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGVIPFIKIF 273

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +    A+ QGG+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+
Sbjct: 274 DTIVNAIQQGGRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAVWMPDEIMR 333

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           R+ +     LF P E  +L   +G+EF   Y     +A+ G +K+++KI +   + + L 
Sbjct: 334 RIKEGEPLYLFDPAECPELVTAWGEEFTKKYFECIEKAETGHLKLWKKIDSREWFNRYLF 393

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L +TGHPW+TFKD  N  +P    GV++SSNLCTEI++ +S E TAVC L S+NL  H 
Sbjct: 394 KLAKTGHPWLTFKDRHNEHNPCPEYGVINSSNLCTEISIPNSPESTAVCTLASVNLAKHL 453

Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             ++   D+DKL  TI T V  LDN++D N +  E+++K+    R +G+GLMGF   L  
Sbjct: 454 NEDRTDIDWDKLKDTIETMVLALDNILDKNFYPSEESRKNTMDLRPLGIGLMGFAETLVE 513

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L IPY S  AVE A++  +F+   A   S ELA+ERG +  +                  
Sbjct: 514 LGIPYDSDTAVEFAEKVAKFMRDTAYRKSEELAKERGPFPHY------------------ 555

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGM---RNSNCMAIAPTATIANICGVSQSIDPSY 786
                            +E+K++ K       RN+  +AIAPTA+I+ I G + SID  +
Sbjct: 556 -----------------EEMKEKGKPYPYPPRRNAVLLAIAPTASISIIAGTTSSIDSYF 598

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIH 845
            N++ +  +SG F VVN  L+ +L++ D+W+E M   +K H GS+  I+ +   + K++ 
Sbjct: 599 SNVFSRDTLSGKFIVVNKQLMKKLEELDMWNEEMAEKIKAHGGSVQFIDELEGKIDKRLF 658

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             A+EI P   I+ A+  QK++DQA S ++Y++E     +  IY  AW  GLK+TYY   
Sbjct: 659 KGAYEIHPFRQIDIAAAFQKYVDQAVSKSIYIEEELRGDMFDIYMYAWEKGLKSTYYCFI 718

Query: 906 RSATSVEKSTLK 917
                 EK T K
Sbjct: 719 DKTVKGEKYTQK 730


>gi|126327914|ref|XP_001363871.1| PREDICTED: similar to LOC505537 protein [Monodelphis domestica]
          Length = 804

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 290/813 (35%), Positives = 447/813 (54%), Gaps = 57/813 (7%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL  + V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMEFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L +E         +K     M+ LY  Y   Y      + ++ +S +D   V LAN
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-NYINPY--NSKHSPMVAKSTLD---VVLAN 127

Query: 284 D------LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
                  + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+   + +   
Sbjct: 128 KDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKDDIDA-- 185

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
            A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K 
Sbjct: 186 -AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKS 244

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE W
Sbjct: 245 AGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPW 304

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H+DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L D++G
Sbjct: 305 HLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMCPNECPGLDDVWG 364

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ+
Sbjct: 365 EEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQN 419

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDN 634
           +G +  SNLCTEI   +S +E AVCNL S+ L       + +D+ KLA   +  VR L+ 
Sbjct: 420 LGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTYDFKKLAEVTKVIVRNLNK 479

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A
Sbjct: 480 IIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGA 539

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS ELA+E G Y +++GS   +G+   D   +            T    W  LK+++ 
Sbjct: 540 LEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP----------TDLWDWKVLKEKIA 589

Query: 755 TI---GMRNSNCMAIA---PTATIANICGVSQSIDPSYQNLYVKSN------MSGDFT-V 801
                G+RN   +      P+    +    S+ + P   +L +         +S  F  +
Sbjct: 590 KYLDGGIRNELLITAGHYKPSTNTLSFLSNSEFLSPKLGSLGLSYTCSFYCFISHHFVQI 649

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+++ T +EI    +++ A+
Sbjct: 650 VNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAA 709

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL    
Sbjct: 710 DRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEK 769

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            K     + D     ++  +  S  +  EC +C
Sbjct: 770 LKEKEKVLKDEEKERNTAAMVCSLENRDECLMC 802


>gi|188996382|ref|YP_001930633.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931449|gb|ACD66079.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 850

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/707 (37%), Positives = 387/707 (54%), Gaps = 72/707 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
           F  YI   V  +LL   +++FD+  L + + Y RD   +Y GL  L DRY     N   I
Sbjct: 105 FKDYINYAVNEKLLKPELLNFDIDLLESKIDYSRDNNLDYFGLSTLKDRYLTKDRNFETI 164

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ FFMRVAMG+   E E     ++ Y+ LS+  ++ STPTLFNSGT   Q SSC++ 
Sbjct: 165 EKPQWFFMRVAMGIGNTEEE----ILKIYDKLSNLEYLHSTPTLFNSGTLTNQYSSCYVN 220

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D L  I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+K+ +  
Sbjct: 221 VVDDSLESIMDKAKETAFLAKYAGGVGTDITRIRATGSKIHSLNAKSSGIIPFIKIFDTI 280

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD  M+R+ 
Sbjct: 281 VNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEIMRRIK 340

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +     LF P E  +L   YG+EF   Y+    +A+RGE+++++KI +   ++K L  L 
Sbjct: 341 EGEPIYLFDPAECRELVTSYGEEFAKKYQECIEKAERGELELWKKIDSRDFYKKYLFKLA 400

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           +TGHPW+TFKD  N  +P     V++SSNLCTEI++ +S + TAVC L S+NL  H    
Sbjct: 401 KTGHPWLTFKDAHNRHNPCPKYSVINSSNLCTEISIPNSPQSTAVCTLASVNLARHLKKV 460

Query: 612 --------------------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                                       +  D+DKL  T+ T V  LDN++D N +  E+
Sbjct: 461 ERETSDVKREELSPNEKNTSHLLTYSPTHSIDWDKLKDTLETMVVALDNILDKNFYPSEE 520

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           ++K+    R IG+GLMGF  AL  L IPY S EA+E+A E  +F+       S ELA+ER
Sbjct: 521 SRKNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAIELAKEIAKFMRETVYRKSEELAKER 580

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-------- 757
           GA+  +                       E++   + ++  +EL    KT          
Sbjct: 581 GAFPHYY----------------------EVSKRESEKVKSEELNPNEKTPTHLLTYSPT 618

Query: 758 -------MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                   RN+  +AIAPTA+I+ I G S SID  + N++ +  +SG F VVN  L+  L
Sbjct: 619 HPYNYPPRRNAVLLAIAPTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKML 678

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++ +W+E M+  +K + GSI  I+ +   + K++  TA+E+ P   I+ A+  Q++IDQ
Sbjct: 679 EEKGIWNEEMLEKIKANQGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQ 738

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           A S +LY++E     ++ IY  AW  GLK+TYY         EK T+
Sbjct: 739 AVSKSLYIEEDLRDDMENIYMYAWEKGLKSTYYCFIDKTIKGEKYTM 785


>gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 797

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/770 (34%), Positives = 432/770 (56%), Gaps = 37/770 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   + +  ++   +   C GL    V   ++  +    +Y G++ S+L+     
Sbjct: 3   VIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQ 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++     + P+ + + AR  +  L +    T + K  +  H  +     E      +E  
Sbjct: 63  TAAYQATQHPDMSLLAARISVSNLHKCTWKT-FSKTIEMLHTYVLPQTGERSSLISDEVF 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  + ++ ++D       + ++ ERDF ++Y G + L   Y L  NG  +E  Q   MRV
Sbjct: 122 RIVMENKEVLD-------SAIQDERDFEYDYFGFKTLEKSYLLRANGFVVERIQHMLMRV 174

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+G+   + +    A+E Y+L+S   F  ++PTLFN+GT  PQLSSCFL  V +D + GI
Sbjct: 175 AIGIHQTDIDS---AIESYDLMSQRLFTHASPTLFNAGTPRPQLSSCFLLNVKEDSIEGI 231

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           +  L++ A ++K++GG+G     +R   +++ G+NG S G++P L+V NDTA  V+QGG 
Sbjct: 232 YDTLKQCACISKFAGGIGVSIHSIRATDSYVAGSNGSSNGLVPMLRVFNDTARYVDQGGG 291

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKG+   Y E WH D+  FLDLRKN G++  R  D+  A WIPDLFMKRV  +  W+LF
Sbjct: 292 KRKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWSLF 351

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+E   L D++G EFE  Y++YE +         R I A  LW  ++    ETG P++ 
Sbjct: 352 CPNEAPGLPDVFGDEFEALYKSYEAKG-----LARRSIKARQLWVAIMDAQVETGTPYML 406

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617
           FKD CN +S Q+++G + SSNLCTEI   +  +E AVCNL SI+L A  +  +     FD
Sbjct: 407 FKDACNSKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDGQPAFD 466

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +L    +   R L+ VID+N + +E+AK+SN  HR +GLG+ G   A  ++  P+ S 
Sbjct: 467 FHRLYEVTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRFPFESE 526

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  +  E I F A+ ASVELA+++G Y +++GS   QG+   D  G+         
Sbjct: 527 KAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTP------- 579

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W  LK ++   G+RNS  +A  PTA+ A I G ++S++P   N+Y +  ++G
Sbjct: 580 ---SDRWDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNRRVLAG 636

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L  R LW  ++ + +    GS+  ++ IP DLK ++ T +EI    +I
Sbjct: 637 EFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIKQKVVI 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           + ++ R  +I Q+QS+N+++ +P+  KL  ++  +W  GLKT  YYLR++
Sbjct: 696 DMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTK 745


>gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
 gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
          Length = 816

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 282/797 (35%), Positives = 439/797 (55%), Gaps = 49/797 (6%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203
           KI +  G    F+S ++  ++EEA   L D+    ++    + +   L+  +L T  A +
Sbjct: 3   KIKVLSGEEEEFDSVKIHKLLEEASFNLGDLDLDQLVESVQRGLPSTLTIEELYTFIAEV 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            +SR +    PNYA +  R    KL  +V    +   ++ +K    E +   P     Y 
Sbjct: 63  IASRVIYH--PNYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRESKSYSPISSAFY- 119

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
                 +++ +    FD V     +   RD +  Y G++ L   Y L + G   E+PQ  
Sbjct: 120 ------KVVKKHGEFFDKV-----IDKTRDSSLTYFGIKTLESSYLLKMGGEVAELPQYL 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
           FMRVA+G+   +       VE Y+L+S  +F+ ++PTL+N+G+    LSSCFL  + +D 
Sbjct: 169 FMRVAIGIHQNDLNA---IVETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKEDS 225

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L E A+++K SGG+G     +R  GA+I GTNG S G++P L+V N+TA  V+
Sbjct: 226 IDGIFKTLNEAALISKASGGIGIHVHNIRSNGAYIAGTNGSSNGLVPMLRVYNNTARYVD 285

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV  N+ 
Sbjct: 286 QGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSD 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSP+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L    ETG 
Sbjct: 346 WTLFSPNEALGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILQSQTETGG 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
           P++ +KD CN +S Q+++G + SSNLC EI   SS EETAVCNL S+ L  +    +   
Sbjct: 400 PYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAI 459

Query: 616 -FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            FD++KL S  +   R L+ VID+  + ++ A+ SN  HR I LG+ G       L +P+
Sbjct: 460 AFDFEKLHSVTKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPF 519

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A  +  +  E I   A+ ASVELA + G Y +F+GS    G+   D          
Sbjct: 520 DSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFD---------- 569

Query: 735 ELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +  ++ S +  W+ LK  ++  G+RNS  +A  PTA+ + I G ++  +P   NLY + 
Sbjct: 570 -MWNHKPSPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRR 628

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G++ +VN +L+ +L    +WD AM + +   +GSI  I  IPD++K+++ T +E+  
Sbjct: 629 VLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQ 688

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++A+   
Sbjct: 689 KVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAI 748

Query: 913 KSTLKGVDGKL--NAVP 927
           + T+   + +   N VP
Sbjct: 749 QFTVDASEAEKAGNKVP 765


>gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
 gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
          Length = 861

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/763 (35%), Positives = 428/763 (56%), Gaps = 41/763 (5%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V+  C GL    V +  +       +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VQRLCYGLDPNHVDAVAITQRVISGVYHGVTTIELDNLAAETAAYMTTIHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
            +  L ++  T  Y    K  +  +            + G+ + ++ +   D  L +   
Sbjct: 82  AVSNLHKQT-TKQYSSVSKELYDYINP----------KTGLHSPMISKETYDIILKHTDE 130

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+   + EK    +
Sbjct: 131 LNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAIGIHGDDIEK---VI 187

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNL+S   F   +PTLFN+GT  PQ+SSCFL  + DD + GI+  L+  A+++K +GG
Sbjct: 188 ESYNLMSQRLFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSIDGIYDTLKTCALISKSAGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G     +R  GA+I GTNG S G+IP ++V N+TA  V+QGG KR GA   YLE WH D
Sbjct: 248 IGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALYLEPWHSD 307

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D+RKN G +  R  D+  A WIPDLFMKRV QNA WTLFSP+E   L D+YG EF
Sbjct: 308 IFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWTLFSPNEAPGLADVYGDEF 367

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE    + +RG       I A  LW  +L    ETG P++ +KD CN +S Q+++G+
Sbjct: 368 EELYER-YERENRGR----STIKAQKLWYSILEAQTETGTPFMLYKDACNKKSNQKNLGM 422

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + SSNLC EI   SS EE AVCNL SI L +    +     ++++KL    +   + L+ 
Sbjct: 423 IKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSSLWYNFEKLHEVTKVVTKNLNK 482

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID N + + +A++SN  +R I LG+ G       L +P+ S +A E+  +  E I   A
Sbjct: 483 IIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLPFDSQQARELNIQIFETIYHAA 542

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + +S+ELAQ  G Y S++GS   +G+   D   L      EL         WD LK+ + 
Sbjct: 543 VESSIELAQIEGPYESYEGSPASKGLLQYD---LWDRKPTEL-------WDWDTLKQNLS 592

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L+ +L    
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W++AM +++  ++GS+  +  +PD++K ++ T +EI    +I+ A+ R  +IDQ+QSLN
Sbjct: 653 IWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T+
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFTV 755


>gi|322815075|gb|EFZ23824.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 731

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 276/751 (36%), Positives = 424/751 (56%), Gaps = 44/751 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +A  L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L
Sbjct: 2   LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +  ++   + K P+Y  +  R  +  L +    +V +       H++          
Sbjct: 62  DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH--------- 112

Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
             + G  A LL + + +    +   L   + Y+RD  FE+ G + L   Y L ++  R  
Sbjct: 113 --DTGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGE 170

Query: 314 ---IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
               E PQ  F+RVA+G+  ++ E+ K   E Y+ +S  +F  +TPTLFN+GT  PQ+SS
Sbjct: 171 REIAERPQQMFLRVALGIHGEDMERVK---ETYDHMSLGYFTHATPTLFNAGTPFPQMSS 227

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  + +D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+
Sbjct: 228 CFLVAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLR 287

Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           V N+TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDL
Sbjct: 288 VWNNTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDL 347

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV     WTL  P     L D YG +F+  YE YER+ +RG     + + A +LW  
Sbjct: 348 FMERVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYERE-NRG----VKTVQAQSLWFA 402

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           +L +  ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI  L
Sbjct: 403 ILELQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASI-AL 461

Query: 609 AHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
             F + +   +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G   
Sbjct: 462 PRFVDKERKIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMAD 521

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
              L+ +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D 
Sbjct: 522 TFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFD- 580

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              L E +      R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P 
Sbjct: 581 ---LWEQKP-----RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPF 632

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++
Sbjct: 633 TSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELY 692

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              +EI    LIE A  R K+IDQ+QSLNL+
Sbjct: 693 RVVWEIRQKDLIEMAVDRGKFIDQSQSLNLF 723


>gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans]
 gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans]
          Length = 867

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/747 (37%), Positives = 421/747 (56%), Gaps = 47/747 (6%)

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
           LL+KLR        K+ + +T H  + L    F        +  L +++ +D        
Sbjct: 105 LLQKLRSSSKAPTVKRHKTSTSHNDKNLISAAF-------YEMALRYQTTLD-------A 150

Query: 284 DLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-E 341
            ++ +RDF F Y G + L   Y +   N    E PQ  FMRVA  LA+     +  AV E
Sbjct: 151 AIQPDRDFDFSYFGWKTLSKSYLIKRKNEETHETPQFLFMRVA--LAIHGPRGDIDAVLE 208

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGL 400
            Y+L+S   F+ ++PTLFN+GT +  LSSCFL   + D + GI+  L + AM++K SGG+
Sbjct: 209 TYDLMSRKFFIHASPTLFNAGTVNQYLSSCFLVAMIEDSIDGIYRTLHKTAMISKASGGV 268

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDV 459
           G   + VRG GA+I G+NG S G++P L+V N+TA  V+QGG KR GA C YLE WH DV
Sbjct: 269 GVHVSNVRGTGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFCIYLEPWHSDV 328

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FL LRKN G +  R  D+  A WIPDLFM+RV QN  W LFSPDE   L + +G+EF+
Sbjct: 329 LDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQNGSWCLFSPDEAPGLQECFGEEFK 388

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             YE YE+      +   +K+ A  LW ++L    ETG P++ +KD CN +S Q+++G +
Sbjct: 389 KLYETYEKT-----LAPAKKMPAQKLWSEILQSQVETGGPFMLYKDSCNNKSNQKNLGTI 443

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
            SSNLC EI   SS  ETAVCNL S+  L  F   Q     FD++ L   ++   + LD+
Sbjct: 444 KSSNLCCEIVQYSSPSETAVCNLASV-ALPSFVKLQREQAIFDFESLHKIVKVLTKNLDS 502

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDI  + +E AK SN  +R I +G+ G   AL +L IP+ S  A  +  +  E I   A
Sbjct: 503 VIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRIPFHSESARVLNKQIFETIYHAA 562

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S+E +++ G Y SF  S   +G F  D  GL  +  + L  +      W E++++VK
Sbjct: 563 VETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDNYEFLFSD------WKEMREKVK 616

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +   PTA+ + I G ++S +P   N+Y +  +SG+FTV+N ++V++  +  
Sbjct: 617 QHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTRRVLSGEFTVINKYMVDDFCRLG 676

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +W+E + + +   +GSI  IE IP +LK+++ T +EI    +I+ ++ R  +IDQ+QSLN
Sbjct: 677 IWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIPQRVMIDLSADRGPFIDQSQSLN 736

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV------EKSTLKGVDGKLNAVP 927
           L+L EP+  KL  ++   W  GLKT  YYLR+++A+        +++TL+G       + 
Sbjct: 737 LFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGAIKFTINQENTLRGAVSIRKGLE 796

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V   +   H    PSSC      +V +
Sbjct: 797 VKQLSVFGH---YPSSCKPHLHIKVAK 820


>gi|319955827|ref|YP_004167090.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 791

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 296/834 (35%), Positives = 430/834 (51%), Gaps = 128/834 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G +   +  +++     A  GL  VS   +  +      D +S  +++  LI 
Sbjct: 2   IKVVKRNGRVEPLDVSKIQKYTSAAVEGLDGVSQSELEVDAKLQFRDMISTEEIQLTLIK 61

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+  +PN+  V AR  L          +Y K    T +       +YF R  +EG
Sbjct: 62  TAVDKIDIDQPNWTFVAARLFL--------YDIYHKVSGFTGY---IHLRDYFDRGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      +DL  L + +K ERD  F YLG++ LYDRY L    G  IE+PQ  FM
Sbjct: 111 ---RILLGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WHIDV +FLDL+KN+G++RRR HD+  A WI DLFMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYIEPWHIDVRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EV +L DLYG+EFE  Y   E + D    K    +SA  LW+++L   FETG+P++ 
Sbjct: 348 DPYEVKELTDLYGEEFEKRY--LELEQDESITK--EVVSAKQLWKEVLRSYFETGNPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----D 617
           FKD  N  +P +H GV+ SSNLCTEI  N+S     +  +     + +F   +       
Sbjct: 404 FKDAANRANPNRHAGVIRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDSG 463

Query: 618 YDKLASTIRTAVRVLD-------------------NVIDINCHTIEK------------- 645
             K A  I TA+  LD                   N+  +N   I               
Sbjct: 464 VTKPAKKI-TALDTLDGKKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIR 522

Query: 646 -------------AKKSNHTHRAIGLGL--MGFQSALHLLHIPYASPEAVEIADESMEFI 690
                         K      ++  +GL  MG    L    I + S E     DE ME +
Sbjct: 523 MLDNVIDLNFYPLGKVKKTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMN 739
           S++AI AS +LA E+G Y +F+GS W +G+FPID             GL     D     
Sbjct: 583 SYYAIKASSDLALEKGCYPNFEGSDWSKGIFPIDKANPEACKLVDRGGLFGYTHD----- 637

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG  
Sbjct: 638 ------WEALREKVKNDGMRNGYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSGMI 691

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VV                               +  +  D    +   +E+D   L+ +
Sbjct: 692 PVV-------------------------------VPNLNPDTWAYYTPCYELDQRLLVRA 720

Query: 860 ASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            + RQKWIDQ QSLN++  LD+ SG+ L+ IY +AW  GLK+TYYLRS+S  +V
Sbjct: 721 GAIRQKWIDQGQSLNIFIRLDKASGRYLNDIYMEAWKFGLKSTYYLRSQSPEAV 774


>gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13]
          Length = 885

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/737 (35%), Positives = 409/737 (55%), Gaps = 36/737 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 63  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 352 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI 
Sbjct: 406 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 465

Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I LG+
Sbjct: 466 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 525

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      +L +P+ S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+
Sbjct: 526 QGLADTYMMLRLPFESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 585

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D                     W+ L+K +   G+RNS  MA  PTA+ + I G ++
Sbjct: 586 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 635

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +
Sbjct: 636 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 695

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT 
Sbjct: 696 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 755

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR+++A++  + T+
Sbjct: 756 MYYLRTQAASAAIQFTI 772


>gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 99B1]
          Length = 746

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/767 (35%), Positives = 417/767 (54%), Gaps = 48/767 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--EE 262
           ++  L    P+Y+K+ AR          +++++K         M  LY      Y+  + 
Sbjct: 61  TATYLTMTHPDYSKLAARI--------AVSSLHKMTSNKFSSVMDSLY-----NYVNTKT 107

Query: 263 GVKARLLHESMMD--------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           G  + L+ + +++        FD V     + YE+D  ++  G + +   Y   ING  +
Sbjct: 108 GQWSPLIADDIIECIRSNADVFDDV-----INYEKDLEYDIFGYKTMEKSYLSRINGDIV 162

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+G+   + +    A+E Y LLS   F  +TPT++N+GT++PQ+SSCFL 
Sbjct: 163 ERPQHMLMRVAIGIHCPDVDA---AIETYKLLSQKKFTHATPTMYNAGTKNPQMSSCFLL 219

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            + DD + GIF  ++  A+++K +GG+G     VR   ++I GT G S G++P L+V + 
Sbjct: 220 KMKDDSIEGIFDTIKNCALISKNAGGIGVSIHNVRAQNSYISGTGGYSNGLVPMLRVFDS 279

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG +RKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKR
Sbjct: 280 TARYVDQGGGRRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKR 339

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V     W+LF P E   L D++G ++   YE YE +      K  + I A  LW  ++  
Sbjct: 340 VEAGKNWSLFCPHECPGLSDVWGDDYVALYEKYESEG-----KARKTIPAQKLWFAIMDS 394

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L +   
Sbjct: 395 QIETGTPYMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVK 454

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +  FD+  L      A   LD VID N + I +A++SN  HR IGLG+ G      +L I
Sbjct: 455 DGSFDHQHLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKI 514

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + SP+A  +  E  E + F A++AS +LA+ +G YS+++GS    G F  D   +   V
Sbjct: 515 SFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTPSV 574

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                     R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +
Sbjct: 575 ----------RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSR 624

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI 
Sbjct: 625 RVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEIS 684

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
              LI+ A+ R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 685 MRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
 gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
          Length = 738

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/756 (35%), Positives = 425/756 (56%), Gaps = 43/756 (5%)

Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
            LQ+V     + + Y    + +S  ++ T +  ++ +++   P Y K++AR L+  L   
Sbjct: 2   SLQNVDKNYFIDKVYNGWCEDMSSFEMITFVSETAASMMTINPEYGKLSARILICHLHEI 61

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
              T  +K      +    + PE +    E  VK R + + ++D           Y +D+
Sbjct: 62  TFNTFSEKIIYLQKYR-NIINPEIY----EIVVKNREIIDDIID-----------YTKDY 105

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
              +  +  L   Y   +N   IE PQ  FMRVA+ +     EK K   E Y+L+S+ +F
Sbjct: 106 DLTFFSITSLMKSYLFRVNDEVIERPQDIFMRVALQIHRDNWEKVK---ETYDLMSNHYF 162

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPTL+NS T   QL+SCFL + + D + GI+  L++ A+++K+SGG+G +   +R  
Sbjct: 163 THATPTLYNSCTIRSQLASCFLLSPINDSIEGIYDTLKQCAVISKHSGGIGLNLHSIRCN 222

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWHIDVEEFLDLRKNT 469
           G+ +  T GKS+G+IP ++V N T   +NQGG R+ +  A YLE WH D+ +FLDLRKNT
Sbjct: 223 GSDLVSTGGKSRGIIPLIQVINSTKKYINQGGNRRSSSMAIYLEPWHKDIFDFLDLRKNT 282

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G +  R  D+ TA WI DLFM+RV +N  W+LF P+E   L D++G++F   Y  YER  
Sbjct: 283 GSEDIRARDIFTALWINDLFMERVDKNEEWSLFCPNEAKGLDDVWGEDFNKLYTKYERTK 342

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R  +K      A  LW+ ++    ETG P++ +KD CN  S QQ++G++ SSNLC EI 
Sbjct: 343 NRTVVK------ARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLGIIKSSNLCAEII 396

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             S   E AVCNL S+ L       +FD+++L+  ++   R L+N ID   + +E+ K+S
Sbjct: 397 EYSDKNEIAVCNLASVCLSRFVREGKFDFEELSKIVKVITRNLNNCIDSTFYPVEECKRS 456

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S  A ++  +  E I + A+  SVELA+E G Y 
Sbjct: 457 NFRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEYGPYE 516

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAP 768
           +F GS   +G+F             EL   +   L  W+ L++++K  G+RNS  ++  P
Sbjct: 517 TFAGSPLSKGIFHF-----------ELCKKKVPNLEKWNLLREKIKKHGVRNSLLVSPMP 565

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TA+ + I   ++  +P   N+Y +   +G+F +VN +L+ +L   +LW   M + +  ++
Sbjct: 566 TASTSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYE 625

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI NI+ IP D+K ++ TA+E+    +I+ A+ RQ +IDQ+QSLNL++ +P+  KL  +
Sbjct: 626 GSIQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSM 685

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           +  A+  GLKT  YYLR+R  TS  K T   VD KL
Sbjct: 686 HFYAFKSGLKTGMYYLRTRPITSAIKFT---VDQKL 718


>gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3]
          Length = 806

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/779 (35%), Positives = 423/779 (54%), Gaps = 48/779 (6%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DGT    +  ++   + E     + V  +++  +    + +G   S+++  L  ++  + 
Sbjct: 11  DGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDELLAHTASNMT 70

Query: 211 EKEPNYAKVTARFL---LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              P+Y+K+ AR     L KL     + V K+               +F    + G++A 
Sbjct: 71  TTHPDYSKLAARIAVTNLHKLTSPKFSEVCKR--------------LWFNVNPDTGLRAP 116

Query: 268 LLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           L+ +   +    +   L   +++  DF + Y G + L   Y L      IE PQ   MR 
Sbjct: 117 LIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQHTLMRC 176

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+ +     +     ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  +  D + GI
Sbjct: 177 ALQI---HGDNXDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKSDSMEGI 233

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
              ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N     V+QGG 
Sbjct: 234 ADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERMVDQGGN 293

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV     W+L 
Sbjct: 294 KRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLM 353

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P     L +++G EFE  Y  YE      E K  R + A  LW  +L    ETG P++ 
Sbjct: 354 CPASCPGLDEVWGPEFEALYTRYE-----AEGKARRTVKARDLWNSVLVAQLETGGPFML 408

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDY 618
           +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L        A + ++Y
Sbjct: 409 YKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYEY 468

Query: 619 D--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D   LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      ++ IP+  
Sbjct: 469 DFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTC 528

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL  E     
Sbjct: 529 GKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKRE----- 583

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NLY +  +S
Sbjct: 584 --DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLS 641

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+EI    L
Sbjct: 642 GEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDL 701

Query: 857 IESASRRQKWIDQAQSLNLYL--DEP--SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           I  A+ R  ++DQ+QSLNL+L  D+P    KKL  ++  AW  GLKT  YYLR+++A +
Sbjct: 702 ITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVA 760


>gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291]
          Length = 869

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/737 (35%), Positives = 409/737 (55%), Gaps = 36/737 (4%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 47  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 106 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 158

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 159 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 215

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 216 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 275

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 276 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 335

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 336 DLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 389

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI 
Sbjct: 390 YAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIA 449

Query: 607 LLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I LG+
Sbjct: 450 LPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGV 509

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      +L +P+ S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+
Sbjct: 510 QGLADTYMMLRLPFESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGI 569

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D                     W+ L+K +   G+RNS  MA  PTA+ + I G ++
Sbjct: 570 LQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNE 619

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +
Sbjct: 620 CFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQE 679

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT 
Sbjct: 680 LKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTG 739

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR+++A++  + T+
Sbjct: 740 MYYLRTQAASAAIQFTI 756


>gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
 gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
          Length = 816

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 278/795 (34%), Positives = 436/795 (54%), Gaps = 60/795 (7%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T  A +
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK--------KPQKATHHEMQCLYPEY 255
            +SR +    P+YA +  R    KL  +V  +  +        +P+K+  +         
Sbjct: 63  IASRVIYH--PDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP---ISSA 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F + +++       H   +D         +   RD+   Y G++ L   Y L I+G   E
Sbjct: 118 FYKVVKK-------HGEFLD-------KVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAE 163

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FMRVA+G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  
Sbjct: 164 LPQYLFMRVAIGIHQNDINA---IAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVA 220

Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           + DD + GIF  L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+T
Sbjct: 221 MKDDSIDGIFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNT 280

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KR GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV
Sbjct: 281 ARYVDQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRV 340

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N+ WTLFSP+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L   
Sbjct: 341 KENSDWTLFSPNEAVGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILHSQ 394

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            ETG P++ +KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +   
Sbjct: 395 TETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKT 454

Query: 614 NQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
            +    FD++KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       
Sbjct: 455 TEDAIGFDFEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAE 514

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ S  A  +  +  E I   A+ ASVELA + G Y +F+GS   +G+   D     
Sbjct: 515 LRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFD----- 569

Query: 730 AEVRDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +  ++ S +  W  LK  ++  G+RNS  +A  PTA+ + I G ++  +P   N
Sbjct: 570 ------MWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSN 623

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LY +  ++G++ +VN +L+ +L    +WD AM + +   +GSI NI  IPD++K+++ T 
Sbjct: 624 LYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTV 683

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +E+    +I+ A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++
Sbjct: 684 WELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQA 743

Query: 908 ATSVEKSTLKGVDGK 922
           A+   + T   VD K
Sbjct: 744 ASRAIQFT---VDAK 755


>gi|131840167|ref|YP_001096176.1| ORF141 [Cyprinid herpesvirus 3]
 gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706742|gb|ABG42968.1| ORF141 [Cyprinid herpesvirus 3]
 gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3]
          Length = 806

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/779 (35%), Positives = 423/779 (54%), Gaps = 48/779 (6%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DGT    +  ++   + E     + V  +++  +    + +G   S+++  L  ++  + 
Sbjct: 11  DGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDELLAHTASNMT 70

Query: 211 EKEPNYAKVTARFL---LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              P+Y+K+ AR     L KL     + V K+               +F    + G++A 
Sbjct: 71  TTHPDYSKLAARIAVTNLHKLTSPKFSEVCKR--------------LWFNVNPDTGLRAP 116

Query: 268 LLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           L+ +   +    +   L   +++  DF + Y G + L   Y L      IE PQ   MR 
Sbjct: 117 LIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQHTLMRC 176

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+ +     +     ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  +  D + GI
Sbjct: 177 ALQI---HGDNIDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKSDSMEGI 233

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
              ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N     V+QGG 
Sbjct: 234 ADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERMVDQGGN 293

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV     W+L 
Sbjct: 294 KRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLM 353

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P     L +++G EFE  Y  YE      E K  R + A  LW  +L    ETG P++ 
Sbjct: 354 CPASCPGLDEVWGPEFEALYTRYE-----AEGKARRTVKARDLWNSVLVAQLETGGPFML 408

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDY 618
           +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L        A + ++Y
Sbjct: 409 YKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYEY 468

Query: 619 D--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D   LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      ++ IP+  
Sbjct: 469 DFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTC 528

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL  E     
Sbjct: 529 GKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKRE----- 583

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NLY +  +S
Sbjct: 584 --DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLS 641

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+EI    L
Sbjct: 642 GEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDL 701

Query: 857 IESASRRQKWIDQAQSLNLYL--DEP--SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           I  A+ R  ++DQ+QSLNL+L  D+P    KKL  ++  AW  GLKT  YYLR+++A +
Sbjct: 702 ITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVA 760


>gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 862

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/648 (39%), Positives = 376/648 (58%), Gaps = 28/648 (4%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +K +RD+   Y G++ L + Y L I+G   E PQ  F+RV++G+    T       E YN
Sbjct: 140 IKSDRDYDLTYFGIKTLENSYLLRIDGEVAETPQQMFLRVSIGI---HTHSVSHVEETYN 196

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
           L+S  +F+ + PTL+N+G++   LSSCFL  + DD + GI+  L E A+++K SGG+G  
Sbjct: 197 LMSQKYFIHALPTLYNAGSKFNYLSSCFLMAMKDDSIDGIYKTLHETALISKASGGVGIH 256

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
              +R  G++I  TNG S G++P L+V N+TA  V+QGG KR GA   YLE WH DV + 
Sbjct: 257 VHDIRANGSYIASTNGLSNGLVPMLRVFNNTARFVDQGGGKRPGAFAIYLEPWHADVFDI 316

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD+RKN G++  RT D+    WIPDLFM+RV  N  W+LFSPDE   L D+YG +F+  Y
Sbjct: 317 LDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFSPDEAPGLSDVYGDDFKELY 376

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YE+     E    R I+A  LW  +L    ETG P++ +KD CN +S Q+++G + SS
Sbjct: 377 ERYEK-----EKLATRTINAQKLWLAILESQTETGGPYMLYKDACNRKSNQKNLGTIKSS 431

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDI 638
           NLC EI   SS  ETAVCNL S+ L +    ++    FD+ KL    +   + L+ VID+
Sbjct: 432 NLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHEVTKVVTKNLNKVIDV 491

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             + +E AK SN  HR I LG+ G       L +P+ S  A  +  +  E +   AI AS
Sbjct: 492 TMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLNIQIFETVYHAAIEAS 551

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTI 756
           +EL+   G Y+SF+GS   +G    D           L  ++ S L   WD LK +V   
Sbjct: 552 MELSIVEGPYASFQGSPASKGKLQFD-----------LWNHKPSDLYDDWDILKSKVMKY 600

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ + I G ++  +P   NLY +  +SG+F VVN +L+ +L    LW
Sbjct: 601 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVNKYLIKDLIDLGLW 660

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           + AM + L    GS+ NI+ +P +LK ++ T +E+    +I+ A+ R K+IDQ QS+N+Y
Sbjct: 661 NSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADRAKFIDQLQSMNIY 720

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           L  P+  KL   +  AW MGLKT  YYLR+++AT   + T+   +  L
Sbjct: 721 LQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTIDANEANL 768


>gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895]
 gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895]
          Length = 864

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/635 (40%), Positives = 372/635 (58%), Gaps = 20/635 (3%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF F Y G + L   Y L   G   E PQ  FMRVA+ L     + + R +E Y L+++ 
Sbjct: 159 DFTFTYFGWKTLCKSYLLKHQGRVHETPQYMFMRVALALHGPSGDID-RVLETYRLMANK 217

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +F+ ++PTLFN+GT    LSSCFL  + +D + GI+ AL + A+++K SGG+G   + +R
Sbjct: 218 YFIHASPTLFNAGTTSQFLSSCFLLGIHEDSIDGIYNALHKAALISKASGGIGIHVSDIR 277

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L V N TA  V+QGG KR GA C YLE WH DV +FL LR+
Sbjct: 278 ANGSYISGTNGTSNGLVPMLSVFNSTARYVDQGGNKRPGAFCIYLEPWHADVFDFLRLRR 337

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           N G +  R  D+    WIPDLFMKRV  N  W+LFSP+E   L D YG+ FE  Y  YER
Sbjct: 338 NHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFSPNEAVGLSDCYGEAFEQLYVRYER 397

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E++ +R++ A  LWR++L    ETG P++ +KD CN +S Q+++G + SSNLC E
Sbjct: 398 -----ELEPYRRVKAQELWREILLSQTETGGPFMLYKDACNSKSNQKNLGTIKSSNLCCE 452

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
           I   SS +E AVCNL S+ L    +       FDY +L S ++   R LD  IDI  + +
Sbjct: 453 IVEYSSRDEVAVCNLASVALPTFVSVTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPV 512

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A++SN  HR + LG+ G      L+  P+   EA ++  E  E I   A+  S+ELA 
Sbjct: 513 PEAERSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAA 572

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT-IGMRNSN 762
           E G Y+SF GS   +G    D   L    +D           WDELK+++K+  G+RNS 
Sbjct: 573 EYGVYASFVGSPASKGELQFD---LWGRNKDNYQFLYDD---WDELKEKIKSGPGLRNSL 626

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +   PTA+ + I G ++S +P    +Y +  +SG++T+VN ++V +     +W E + +
Sbjct: 627 LVGPMPTASTSQILGFTESFEPMTSMIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKN 686

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            +    GSI  I+ IP DLK ++ T +E+    LI+ ++ R  ++DQ+QSLNL+L EP+ 
Sbjct: 687 RIIKDGGSIQGIDGIPPDLKDLYKTVWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTM 746

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            KL  ++  AW  GLKT  YYLR+++A +  + TL
Sbjct: 747 GKLTSMHFYAWKKGLKTGMYYLRTQAAANAIQFTL 781


>gi|289548461|ref|YP_003473449.1| ribonucleoside-diphosphate reductase subunit alpha [Thermocrinis
           albus DSM 14484]
 gi|289182078|gb|ADC89322.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermocrinis
           albus DSM 14484]
          Length = 766

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 285/811 (35%), Positives = 436/811 (53%), Gaps = 93/811 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G     +  ++ ++++ AC+GL DV    +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRSGRREELDISKIRIVIDFACAGL-DVDPLELEMDAQIQFRDNITTREIQQLLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----Y 259
           ++   +  E P++  V AR LL  L ++V      K +   + + +   PE F      Y
Sbjct: 60  TAAEKVSPETPDWTYVAARLLLYDLYKDVGHLRGYKVKDKINGKYRPYNPESFYHLIKTY 119

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318
            + G+    L E+    ++  LA  +K ERD  F Y G+++L DRY +     RI E+PQ
Sbjct: 120 TDRGIYGGYLLENYTKEEIDQLAQYIKPERDLLFNYTGIKVLSDRYLVRDEEGRIIELPQ 179

Query: 319 AFFMRVAM--GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M +AM  G+A K+ E+ +   +FY++LS  +   +TPT+ N+   H QLSSCF+ TV
Sbjct: 180 EMYMLIAMTLGIAEKKEERLEWVKKFYDVLSQHYVSLATPTMMNARRTHTQLSSCFVLTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S GV+P +K+ ND  V
Sbjct: 240 DDDLYDIFDNVQKAAQISKFAGGLGIYLGKIRATGAPIRKFRGASSGVLPVVKIINDVMV 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH DV +FL+++ N GD+R++ HD++ A  IPDLFM+RV + 
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVLDFLEVKTNVGDERKKAHDIHPAVAIPDLFMERVRRR 359

Query: 497 AGWTLFSP---DEVSD---LHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRK 548
             WTL  P    +V D   L D YGKEFE  Y   E+     E+  +  R++ A  LW++
Sbjct: 360 EKWTLMDPYYCKKVKDGKNLEDFYGKEFEEVYLRLEK-----ELPPYAKREVDAWELWKR 414

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593
           +LT++FETG P+I F+D  N  +P +H G+V+SSNLC EI  N S               
Sbjct: 415 LLTVIFETGEPYIFFRDTANYLNPNKHCGMVYSSNLCMEIIQNMSVTTHEEDILEEDGRI 474

Query: 594 -----SEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                S +  VCNLGSINL L + A +      LA  +   VR+LDNVI IN + I++A+
Sbjct: 475 THRKRSGDVVVCNLGSINLGLVYTAED------LAKVMPVLVRMLDNVISINFYAIKEAE 528

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RAIG+G+  +   L    I + S E ++ AD   E I+++AI AS +LA+ERG 
Sbjct: 529 YTNKRYRAIGIGVSNYHYCLVKNGIQWESEEHIKFADALFERIAYYAIKASCDLAKERGK 588

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F GS W +G+F     G   E   + ++   + L W  L K VK  G+RN   +A+ 
Sbjct: 589 YPLFDGSDWSKGIF----FGRTPEENQQESVKNGNHLDWIGLAKEVKEHGLRNGYLLAVM 644

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT + + I G + S+DP +   Y + NMS                               
Sbjct: 645 PTGSTSLIIGATASVDPIFAKFYKEENMS------------------------------- 673

Query: 828 DGSIGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSG 882
               G + ++P ++KK    + +A+ ID  W I +A+ RQKWIDQ+QS NLY+D  +  G
Sbjct: 674 ----GILPQVPPEIKKYFWHYKSAYHIDQEWSIRAAAARQKWIDQSQSFNLYIDPEKIDG 729

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             L  +Y+ A  +GLKT YY RS+S T +E+
Sbjct: 730 PTLSHLYQLAHQLGLKTVYYCRSKSITDIEE 760


>gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 818

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 275/792 (34%), Positives = 443/792 (55%), Gaps = 47/792 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--A 201
           K+K++  + T   F+  ++  +++E    L+++    VL    K +   ++   L T  A
Sbjct: 3   KVKVLFGE-TEQDFDESKVLKLLQELSFNLENLQLDDVLESVQKGLPATVTVYQLYTFIA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL--YPEYFCRY 259
            + +SR +    P+YA +  R  L KL  +V        ++  +++      Y     ++
Sbjct: 62  EVIASRIIYN--PDYAILAGRVELRKLYLKVPYNFSDNVERLRNYKSHGAKSYSPISSKF 119

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E   K +   + ++D             RD  F Y G++ L + Y L I+    E+PQ 
Sbjct: 120 YEVVKKHKEFFDGLID-----------KSRDDEFTYFGIKTLENSYLLKIDSEPAELPQF 168

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            F+RVA+G+ L++        E Y+L+S  +F+ ++PTL+N+G     LSSCFL  + DD
Sbjct: 169 LFLRVAIGIHLEDL---GSVAETYDLMSKKYFIHASPTLYNAGGEFNYLSSCFLIAMKDD 225

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L E+A+++K SGG+G     VR  G++I GTNG + G++P L+V N+TA  V
Sbjct: 226 SIDGIYKTLHESALISKASGGIGIHVHEVRSNGSYIAGTNGIANGLVPMLRVFNNTARYV 285

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   Y+E WH D+ + L++RKN G +  RT D+    WIPDLFM+RV  + 
Sbjct: 286 DQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADE 345

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL SP E   L D+YG +F+  YE YE+Q       +  KI A  LW  +L    ETG
Sbjct: 346 YWTLMSPSEAPGLSDVYGDDFKELYEKYEKQG------LGTKIRAHKLWLAILESQTETG 399

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN +S Q+++G + SSNLC EI   SS EETAVCNLGS+ L  +   +   
Sbjct: 400 GPYMLYKDACNEKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDE 459

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +FD++KL S  +   + L+ VID+  + +E A+ SN  +R I LG+ G       L +
Sbjct: 460 VIEFDFEKLHSVTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRL 519

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A ++  +  E I   A+ ASVEL+ + G Y +F+GS   +G+   D        
Sbjct: 520 PFESEAARKLNIQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFD-------- 571

Query: 733 RDELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +  +  S++  W++LK+ ++  G+RNS  +A  PTA+ + I G ++  +P   NLY 
Sbjct: 572 ---MWNHTPSKMYDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYN 628

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +W+ AM + +   +GSI NI+ IP D+K+++ T +EI
Sbjct: 629 RRVLSGEFQVVNKYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEI 688

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I+ A+ R K+IDQ+QS+N++L EP+  KL   +  AW  GLKT  YYLR+++A+ 
Sbjct: 689 SQKVIIDMAADRGKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASR 748

Query: 911 VEKSTLKGVDGK 922
             + T+   + +
Sbjct: 749 AIQFTVDATEAE 760


>gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 772

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 279/776 (35%), Positives = 425/776 (54%), Gaps = 49/776 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET- 200
           KL ++  DG+        +  +V+  C GL  + V    V  +  K +  G+S  +L   
Sbjct: 2   KLYVVKRDGSHQEVRLDEITALVQSLCYGLNAEYVDPAAVTVKVVKGVRPGVSTEELNAY 61

Query: 201 -ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A + +S T I  +  YA +  R L++ L +  L + + +  K  H     L  +   R 
Sbjct: 62  AADVAASMTYIHYD--YALLAGRILVDNLHKR-LDSSFSEIIKNLHG--HGLVSDDLLRI 116

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E        H + +D  + +       E DF ++Y G + L + Y L I+    E PQ 
Sbjct: 117 SET-------HAATLDAAIAH-------ELDFEYKYFGYKTLENGYLLKIDNRVAERPQH 162

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRVA+G+   + E    A+E Y ++S   F  ++PTLF++GTR PQ+ SCFL  V DD
Sbjct: 163 MLMRVALGIHGDDIED---AIETYRMMSQKLFTHASPTLFSAGTRIPQMCSCFLLGVRDD 219

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L + A ++KY GG+G +   VR  G+ I+ TNG + G+ P ++V N+    V
Sbjct: 220 SIDGIYRTLGDCAAISKYGGGIGVNVHQVRARGSKINSTNGTASGLEPMVRVFNNMVRHV 279

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGGKRKGA+  Y+E WH D+   L+L++N G +  +  D+  A W+PDLFM+RV  +  
Sbjct: 280 DQGGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDM 339

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D YG EFE  YE YE      E +  +++ A  L R ++    ETG 
Sbjct: 340 WSLMCPHQCPGLADCYGDEFERLYERYE-----SEGRYRQRVRAQDLHRFIVETQVETGG 394

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQF 616
           P++ FKD CN +S QQ++GV+  SNLC EI   S +EETAVCNL SI  N         +
Sbjct: 395 PYMLFKDACNRKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTY 454

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KL +  +  VR L+ +ID N + I  A++SN  HR IG+G+ G   A  LL +PY S
Sbjct: 455 DFEKLKAITKVVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYES 514

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS ELAQ  G+YS+F GS   +GV   D            
Sbjct: 515 EEAAVLNKQIAETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYD------------ 562

Query: 737 AMNRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
             N T    WD   LK  ++  G+RNS  +A  PTAT A I G ++S +P   N+Y++  
Sbjct: 563 MWNATPSALWDWQALKDDIRAHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRV 622

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           ++G+F VVN +L+++L + +++   + + +  H GSI NIE IPD +K ++ TA+E+   
Sbjct: 623 LAGEFQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAK 682

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
            +IE A+ R  +IDQ+QS NL++ +P+   +  I+  +W  GLKT  YYLR++ A 
Sbjct: 683 RMIEMAADRNAFIDQSQSFNLFVAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAA 738


>gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 761

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/817 (33%), Positives = 438/817 (53%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L  Q V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +            +E
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            +   + H  +++ ++     D+K + D+   Y G Q L + Y + IN    E  Q   M
Sbjct: 111 LLSVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           R+A+G+   + +    A++ Y  LS   +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDIDS---AIKSYKFLSRKMYTHASPTMFAAGTLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + A+++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAIISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE   D+G+ +   ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV- 744

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 745 ------------SPN---------LECTKNSDCASCQ 760


>gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta]
          Length = 802

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/762 (35%), Positives = 424/762 (55%), Gaps = 54/762 (7%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V  +  + +Y G++   L+     ++ T+    P+YA + AR  +  L +E      KK 
Sbjct: 3   VAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKET-----KKS 57

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEYLG 297
                H++      Y+ R         ++ E   +++  +   L + + Y+RDF++ Y+G
Sbjct: 58  FSEVMHDL------YYARNSITNQHTPIISEHYYNIIKNNADRLDSAIIYDRDFSYNYIG 111

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            + L   Y L ING  +E PQ   MRVA+G+   + +K    +E YN LS  +F  ++PT
Sbjct: 112 FKTLERSYLLKINGKIVERPQHMLMRVAVGIHENDIDK---VIETYNYLSERYFTHASPT 168

Query: 358 LFNSGTRHPQLSS---------CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
           LFN+ T + Q+SS         CFL T+ +D + GI+  L++ ++++KY+GG+G +   +
Sbjct: 169 LFNACTNNQQMSSLRLISEALLCFLLTLENDSIKGIYSMLKKCSLISKYAGGIGINVHCI 228

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R   A    T   + G++  LK+ N+ AV V+QGG KR GA   YLE WH D+ EFL+L+
Sbjct: 229 RAKSAEDTNT---TNGLVSVLKLYNEIAVYVDQGGNKRPGAFAIYLEPWHADIFEFLELK 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +N GD   R  D+    WIPDLFM+RV  +  W+L  P E   L D++G EF+  Y  YE
Sbjct: 286 RNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPYESPGLADVWGDEFKELYIRYE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++      +  +++ A  +W  +L    ETG P++ +KD CN +S  QH+G +  SNLCT
Sbjct: 346 KEG-----RYRKQVEARTVWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCT 400

Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   S   E AVCNL SI  N+  +     FD+DKL +  +   R LD VID+N + I 
Sbjct: 401 EIVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAKIVTRNLDKVIDVNFYPIP 460

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + K SN  HR IG+G+ G   A  L+   + S EA E+  +  E + + A+  S ELA E
Sbjct: 461 ETKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELAAE 520

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y +++GS   +G+   D   +            T    WDELK ++   G+RNS  +
Sbjct: 521 KGTYETYQGSPVSKGILQYDMWNV----------KPTDLWNWDELKAKIAEHGVRNSLLI 570

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ A I G ++SI+P   N+YV+  +SG+F +VN  L+ +L  R LWDE M +++
Sbjct: 571 APMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEI 630

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             + GS+ NIERIPDDLK ++ T +EI    ++E A+ R  +IDQ+QSLN+++ +P+ +K
Sbjct: 631 LANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEK 690

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVD 920
           L  ++   W  GLKT  YYLR++ A      +V++S L+  D
Sbjct: 691 LTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSKLQSRD 732


>gi|22549569|ref|NP_689342.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 761

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/817 (33%), Positives = 438/817 (53%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L  Q V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +            +E
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            +   + H  +++ ++     D+K + D+   Y G Q L + Y + IN    E  Q   M
Sbjct: 111 LLSVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           R+A+G+   + +    A++ Y  LS   +  ++PT+F +G+  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDIDS---AIKSYKFLSRKMYTHASPTMFAAGSLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE   D+G+ +   ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 746 -------------PN---------LECTKNSDCASCQ 760


>gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 653

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/628 (39%), Positives = 375/628 (59%), Gaps = 32/628 (5%)

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L  +G  +E PQ   MRV++G+   + +K    +E Y+L+S   F  +TPTLFN+GT 
Sbjct: 8   YLLKADGKVVERPQHMIMRVSVGIHKDDIDK---VIETYDLMSQRLFTHATPTLFNAGTP 64

Query: 365 HPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQ+SSCFL T+ +D + GI+  L++ A ++K++GG+G     VR   ++I GTNG S G
Sbjct: 65  KPQMSSCFLLTMKEDSINGIYDTLKQCAQISKHAGGIGLSIHHVRAANSYIRGTNGSSNG 124

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QGG KRKG++  YLE WH D+  FLDL+KN G++  R  D+  A
Sbjct: 125 IVPMLRVFNNTARYVDQGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYA 184

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFM+RV  +  W LF P+E   L D + +EF+  YE YE  A  G  +  R + A
Sbjct: 185 MWIPDLFMQRVEADGDWNLFCPNEAPGLSDTHSEEFKELYEQYE--AKEGLSR--RTMKA 240

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL
Sbjct: 241 RLLWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVCNL 300

Query: 603 GSINL-------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            SINL        A      +D++KL        R L+ VID N + IE+A+ SN  HR 
Sbjct: 301 ASINLSALVIPPTAETTKATYDFEKLQHISEVVTRNLNRVIDANYYPIEEARNSNMRHRP 360

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G   A   + +P+ S EA ++  +  E I F A++ASVELA+E G Y ++ GS 
Sbjct: 361 IGIGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAGSP 420

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+   D  G+            T R  W  LK R+   G+RNS  +A  PTA+ A I
Sbjct: 421 ASEGLLQFDLWGV----------KPTGRHDWAALKARMAEHGLRNSLLVAPMPTASTAQI 470

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G ++S++P   N+Y +  ++G+FTVVN +L+ +L +R LW   + + +    GS+ N+ 
Sbjct: 471 LGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQNVR 530

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           +IP +LK ++ T +EI   +++  A+ R  +I Q+QS+N+++ E S  KL  ++  AW  
Sbjct: 531 QIPQELKDLYKTVWEIKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAWKK 590

Query: 896 GLKT-TYYLRSRSAT-----SVEKSTLK 917
           GLKT  YYLR+R        +V++S+LK
Sbjct: 591 GLKTGMYYLRTRPKADAIQFTVDQSSLK 618


>gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 768

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/807 (33%), Positives = 444/807 (55%), Gaps = 55/807 (6%)

Query: 142 APKLKIMMDDGTLISF-NSKRLEMI-VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           + KLKI M  G +  + N  +L+ + V+E    ++ ++S      T K + D  SE+   
Sbjct: 12  SEKLKIDMVRGQIEEYTNLLKLQHVNVDEL---MEKIASGWCEDMTRKEIVDYCSET--- 65

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                 + ++I K P Y  +++R ++  +    + +  +K +    +  Q    E   + 
Sbjct: 66  ------AASMITKHPEYGWISSRIIVSYIHDITMDSFVEKIKYIQKY--QGTISEEMYKI 117

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           I E  +   + +S++D           YE+DF F Y G+  L   Y + +    +E PQ 
Sbjct: 118 IVENAE---IIDSIID-----------YEKDFLFNYFGILTLMKSYLIKVGEEIVERPQD 163

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FMR A+ +   +  K K   E Y +LS  +F  +TPTL+NS  +  QL+SCFL T  +D
Sbjct: 164 VFMRTALQVHKSDFGKVK---ETYEMLSRHYFTHATPTLYNSCLKEAQLASCFLITPRED 220

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + G++  + + A++ KYSGG+G +   +R  G+ +  T GKS G+IP ++V N T   +
Sbjct: 221 SIEGVYHMINQTAIITKYSGGIGLNLHGIRSKGSPLKRTGGKSNGIIPLIQVLNATKRYI 280

Query: 439 NQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           NQG +R+ G++  YLE WH+++ +FLDLRKNTG +  R  D+  A WI DLFM+RV  N 
Sbjct: 281 NQGAERRPGSIAIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNE 340

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P +   L++ +G+EF   Y  YE+   R        + A  LW+ ++    ETG
Sbjct: 341 EWSLFCPSQAVGLNETWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETG 394

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN  S QQH+G + SSNLC EI   SS EET+VCNLGSI+L     N +FD
Sbjct: 395 TPYMCYKDACNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVKNKKFD 454

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++ L   +R     L+ VID N + +E++K+SN  HR IG+G+ G      +L +P+ S 
Sbjct: 455 FESLKDVVRILTINLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSD 514

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E + + A+  S +LA++ G + S++GS   +G+F  +  G  A       
Sbjct: 515 EARNLNKDIFETMYYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKA------- 567

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W+ L++R+K  G RNS  +A+ PTA  + I G +++ +P   N+Y +   +G
Sbjct: 568 ---SNNWDWEGLRERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAG 624

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN  L+N+L +  LW   M + +  ++GSI NI  IP  ++ I+ TA+EI    +I
Sbjct: 625 EFQIVNKHLINDLSELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVI 684

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ RQ ++DQ+QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T 
Sbjct: 685 DLAADRQVFVDQSQSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFT- 743

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             VD KL    ++  N +     + SS
Sbjct: 744 --VDKKLAEKTLSSMNDTDEPCSMCSS 768


>gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           pylori B8]
 gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter
           pylori B8]
          Length = 788

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/827 (35%), Positives = 434/827 (52%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L N +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY---- 618
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSN 463

Query: 619 -----DKLAST-------IRTAVRVLDN----VIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                +KL ST       I  A +V  +    V ++    + K        R + + +  
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 663 FQSALHLLHIPYASPEAVEIADESM--------EFISFHAIS------------------ 696
             + + L   P    +A  + + ++        + ++ H I+                  
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQIS 583

Query: 697 -----ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                 S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 52]
          Length = 788

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/827 (35%), Positives = 437/827 (52%), Gaps = 105/827 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------NLLAHFAN 613
           FKD  N  +P  H G++ SSNLCTEI  N++     +      G+I       L+   +N
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 614 NQFDYDKLAST-------IRTAVRVLDN----VIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                +KL ST       I  A +V  +    V ++    + K        R + + +  
Sbjct: 464 ITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 663 FQSALHLLHIPYASPEAVEIADESM--------EFISFHAIS------------------ 696
             + + L   P    +A  + + S+        + ++ H I+                  
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 697 -----ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                 S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL----- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             + W+                           + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 698 NVETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           S+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVL 778


>gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
 gi|51701818|sp|Q8SR37|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 768

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 417/742 (56%), Gaps = 41/742 (5%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++I K P Y ++++R ++  +    + +  +K +    H    +  E +   +E G 
Sbjct: 65  TAASMITKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHR-GMVSEEMYGIILEHGE 123

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                 E M++           YE DF F Y G+  L   Y + +    IE PQ  FMRV
Sbjct: 124 TI----EGMIN-----------YENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRV 168

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+ +   + EK +   E YNLLS  +F  +TPTL+NS  ++PQL+SCFL T  +D + G+
Sbjct: 169 ALQIHKTDFEKVR---EVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGV 225

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           +  + + A++ KYSGG+G +   +R  G+ +  T G+S G+IP ++V N T   +NQG +
Sbjct: 226 YHMINQAAIITKYSGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAE 285

Query: 444 RK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+ G++  +LE WH+++ +FL+LRKNTG +  R  D+ TA WI DLFM+RV  N  W+LF
Sbjct: 286 RRPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLF 345

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +   L D++G+EF   Y  YE+   R        + A  LW+ ++    ETG P++ 
Sbjct: 346 CPSQAVGLSDVWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETGTPYMC 399

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN  S QQH+G + SSNLC EI   SS EET+VCNL SI L     +  FD++   
Sbjct: 400 YKDACNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFR 459

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             ++     L+ VID N + +E+A++SN  +R IG+G+ G      +L + + S  A  +
Sbjct: 460 RVVKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSL 519

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E + + A+ AS ELA++ G + S++GS   +G+F  +  G  A          + 
Sbjct: 520 NQDIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKA----------SG 569

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ L++R++  G+RNS  +A+ PTA  + I G +++ +P   N+Y +   +G+F +V
Sbjct: 570 NWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIV 629

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LVN+L +  LW   M + +  ++GSI NI  IP ++++I+ TA+EI    +I+ A+ 
Sbjct: 630 NQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAAD 689

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           RQ ++DQ+QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T   VD 
Sbjct: 690 RQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFT---VDK 746

Query: 922 KLNAVPVTDPNSSTHSLGIPSS 943
           KL    ++  N +     + SS
Sbjct: 747 KLAEKTLSSMNDTDDPCSMCSS 768


>gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 891

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/640 (39%), Positives = 370/640 (57%), Gaps = 34/640 (5%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           ++ +RDF   Y  ++ L   Y L IN    E PQ  F+RVA+G+     +     VE Y 
Sbjct: 169 IEKDRDFDLTYFAIKTLERSYLLKINDEMAETPQYMFLRVAIGIHGNNLDD---VVETYE 225

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
           L+SS +F+ ++PTLFN+G+ +  LSSCFL  + DD + GI+  L + A+++K SGG+G +
Sbjct: 226 LMSSRYFIHASPTLFNAGSEYNYLSSCFLVDMEDDSIDGIYKTLHKTALISKASGGIGLN 285

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
              +R  G+ I  TNG S G++P L+V NDTA  V+QGG KR GA   Y+E WH D+   
Sbjct: 286 VHNIRASGSLIASTNGTSSGLVPMLRVFNDTARYVDQGGNKRPGAFAIYIEPWHADIFSV 345

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD++KN G +  R  D+  A WIPDLFM++V  +  W LFSPDE   L D YG EF   Y
Sbjct: 346 LDMKKNHGKEELRARDLFFALWIPDLFMQKVKDDEDWCLFSPDEAPGLADCYGDEFVDLY 405

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE      E +    + A  LW  +L    ETG P++ +KD CN +S Q+++G + SS
Sbjct: 406 NQYE-----AEGRARTVVKAHKLWLAILESQTETGGPYMLYKDSCNRKSNQKNLGTIKSS 460

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN----------QFDYDKLASTIRTAVRVL 632
           NLC EI    SSEETAVCNLGS+ L A   +           +FD++KL S  +   R L
Sbjct: 461 NLCCEIVEYCSSEETAVCNLGSLALPAFIKSVSIDNSDEEVLEFDFEKLHSITKVLTRNL 520

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+  + +E  K SN  HR I LG+ G       L +P++S EA ++  +  E I  
Sbjct: 521 NKVIDVTLYPVESTKVSNMKHRPIALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYH 580

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELK 750
            A+ ASVELA   G Y+SF+GS   +G+   D           L  ++ S L   WD LK
Sbjct: 581 AAVEASVELAMSEGPYNSFEGSPASKGILQFD-----------LWDHKPSELYNDWDSLK 629

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT G+RNS  +A  PTA+ + I G ++  +P   NLY +  ++G++ V N +LV +L
Sbjct: 630 ESVKTHGLRNSLLVAPMPTASTSQILGYNECFEPYTSNLYTRRVLAGEYQVANKYLVKDL 689

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW+ A+ + +   +GSI NI  IP +LK+++ T +EI    +I+ A+ R K+IDQ+
Sbjct: 690 IDLGLWNSAVRNKIIVDNGSIQNISSIPQELKELYKTVWEISQKVIIDMAADRGKFIDQS 749

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           QS+N++L  P+  KL   +   W  GLKT  YYLR+++A+
Sbjct: 750 QSMNIHLQNPTFGKLTSCHFYGWQKGLKTGMYYLRTQAAS 789


>gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV]
          Length = 781

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/774 (33%), Positives = 427/774 (55%), Gaps = 46/774 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++ +
Sbjct: 6   DGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETAAS 65

Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     +Y+ + AR  +  L +E       V+  +Y+   + T      +          
Sbjct: 66  MTIDHSDYSLLAARLAVSNLHKETKDLFFNVIVDMYEAIDQKTGAATPMISD-------- 117

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   
Sbjct: 118 -------FHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMM 170

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  + +D +
Sbjct: 171 MRVAIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSI 227

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQ
Sbjct: 228 EGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQ 287

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W
Sbjct: 288 GGNKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMW 347

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L  +   EFE  YE YE+Q      +  +++SA  LWR ++    ETG P
Sbjct: 348 SLMCPMQSPGLAIVTVFEFEALYEKYEKQG-----RYVKRVSAQTLWRAIIEAQVETGTP 402

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FD 617
           ++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D
Sbjct: 403 YMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYD 462

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L    ++  R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +P+ S 
Sbjct: 463 FERLKEITKSCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESD 522

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ A+ ELA + G Y ++KGS   +G    D             
Sbjct: 523 AAAELNKKIFETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWN---------G 573

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 574 ATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 633

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I
Sbjct: 634 EFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMI 693

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
             A+ R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +
Sbjct: 694 RMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVN 747


>gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 763

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/741 (35%), Positives = 409/741 (55%), Gaps = 40/741 (5%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
           +GL+   S+IV S    ++ D ++   L+      + +++   P+Y  + AR  +  L +
Sbjct: 47  NGLEVDISRIVAS-ICSSVVDNITTVQLDDLTADKAASMVTNHPDYGILAARIAVSNLHK 105

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +   +V       T+ +M  +  + F + +         HE   +F  +     +KY+RD
Sbjct: 106 QSSDSVVD-----TYTKMSSMLSDEFMQVVRA-------HEQ--EFQAL-----VKYDRD 146

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
           + F+Y G   +   Y   ++G  +E PQ  ++RVA+ L  ++  K K   E Y+ LS   
Sbjct: 147 YDFDYFGFSTMKRLYLTKVDGKVVERPQHTYLRVAIALWGEDIAKVK---ETYDALSKRK 203

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F  ++PTLFN+G R+  L+SCFL  V D L  IF +L + A L+K+ GG+G   + +RG 
Sbjct: 204 FTHASPTLFNAGFRNANLASCFLVHVDDSLTNIFKSLGDVAQLSKFGGGIGLHLSDIRGR 263

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I GTNG+S G++P LKV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G
Sbjct: 264 GSKIQGTNGESDGIVPMLKVYDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQG 323

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           ++ +R  ++  A W+ DLFMKRV  +  W+LF P E   L D +GKE+E  Y  YE +  
Sbjct: 324 EETQRARNLFYAMWLNDLFMKRVEADVAWSLFDPKECPGLTDAFGKEYEDLYLRYESEGR 383

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             ++     + A  +W  M+    ETG P++  KD  N+++ Q + G +  SNLC EI  
Sbjct: 384 AKKV-----VKARDVWNAMIITQIETGMPYVLNKDSVNVKNMQSNAGTITGSNLCAEIVE 438

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            +S++ETAVC +GSI L  +  N  +D++ L   ++   + LD  ID+  + I +AK SN
Sbjct: 439 YTSTDETAVCVIGSIVLQNYVKNGAYDFEDLRKHVKILAKNLDKSIDVMSYAIPEAKTSN 498

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IG+G+ G Q     L +P+ S  A  +  E  E I F A+ AS ELA+E G + +
Sbjct: 499 MRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPT 558

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS   +GV      G              +RL W  L++RVK  G+RNS   A+ PTA
Sbjct: 559 FEGSPASRGVMQYHLWG----------TEPVTRLDWKTLEERVKK-GVRNSLTTALMPTA 607

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A ICG  ++++P   NLY +  ++G+F VVN++LV +L  R  W EAM + +  + GS
Sbjct: 608 STAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGS 667

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I  +  I  +LK I+ TA+E+    +I+ A+ R  ++DQ QS+NL++  PS K +  +  
Sbjct: 668 IQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLF 727

Query: 891 QAWLMGLKT-TYYLRSRSATS 910
            AW  GLKT  YY RS+ A +
Sbjct: 728 YAWKKGLKTLMYYCRSKPAAN 748


>gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 761

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/817 (32%), Positives = 441/817 (53%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +  +L   +   C  L  Q V  + V  +  K++ D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSPSKLHNRIHRLCHDLNSQFVHPRAVSLKVIKSLSDHTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K  +Y  +  R L+  + + V  +  K  Q+   H +            +E
Sbjct: 61  ASVAATLTYKHYDYDMLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS----------DE 110

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            +   + H  +++ ++     D+K + D+   Y G Q L + Y + IN    E  Q   M
Sbjct: 111 LLLVTIKHSKIIEENI-----DMKLDLDY--NYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           R+A+G+   + +    A++ Y  LS+  +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDIDN---AIKSYKFLSTKMYTHASPTMFAAGTPTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    VNQG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVNQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FM+RV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L++ +G EFE  Y++YE   D+G+ +   ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPELNNTFGDEFEYWYKHYE---DKGQFR--DQMPAVTLMRTIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N  FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIINGTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            S ++  V  L+ +ID N + +E AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HSVVKHVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS++LA +   YS+F GS   QG+   D    +           T
Sbjct: 516 LNKQISETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L   +L+  +M   +  + GSI +I+ IPD++KK++ T +E    +  ++I+
Sbjct: 626 VNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWECWHNNGKFMID 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+ +P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQFTVA 745

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 746 -------------PN---------LECTKNSDCASCQ 760


>gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 647

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/660 (37%), Positives = 379/660 (57%), Gaps = 38/660 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L++E  T+ Y   
Sbjct: 13  VAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSLQKE--TSGYATA 70

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +    E+  L   Y    ++   K +   E M+D           Y+RD+ F+Y G + 
Sbjct: 71  TRELS-EIGILSSAY----VDFVAKNQFALEDMID-----------YKRDYQFDYFGYKT 114

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L + G  +E PQ  FMRVA+ +A  + E+ +   E Y+LLS  ++  +TPTLFN
Sbjct: 115 LERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSLCYYTHATPTLFN 171

Query: 361 SGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G +  QLSSCFL  + +D + GI+  L++ A+++K +GG+G     +R  GA I GTNG
Sbjct: 172 AGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNG 231

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLRKN G +  R  D
Sbjct: 232 VSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARD 291

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YER          +
Sbjct: 292 LFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYERMG-----LGVK 346

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC EI   S+ +ETA
Sbjct: 347 TIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETA 406

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K +KSNH HR +GL
Sbjct: 407 ACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGL 466

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G YSS+ GS    
Sbjct: 467 GIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISH 526

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G F  D   L  E         +SR  W +LK ++   G+RNS  +A  PTA+ A I G 
Sbjct: 527 GQFQFD---LWCE-------QPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGN 576

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  ++GS+  I+ IP
Sbjct: 577 NEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIP 636


>gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 769

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/776 (33%), Positives = 430/776 (55%), Gaps = 51/776 (6%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLETALIFSSRT 208
           N K+  + +++  S LQ +S  +         +  +  K +Y G+S  +L+      +  
Sbjct: 14  NGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTEELDMHAARETAN 73

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +     +YA +  R +++ L + V  +  +  ++   H +               V   L
Sbjct: 74  MAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL---------------VSDEL 118

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L  S++  + + L + + +  D+ ++Y G + L + Y   I     E  Q   MRVA+G+
Sbjct: 119 L--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKVAERIQHMLMRVAIGV 176

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387
             ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+ +D + GI+  L
Sbjct: 177 HGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTLREDSITGIYETL 233

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+    V+QGGKRKGA
Sbjct: 234 RDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAVRHVDQGGKRKGA 293

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           +  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  +  W+L  PD  
Sbjct: 294 MAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMCPDRC 353

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L D+YG +F+  Y  YER+      K   ++ A  L++ ++    ETG P++ +KD C
Sbjct: 354 PGLSDVYGNQFDELYAQYEREG-----KQVSQVPARDLFKFIIETQVETGTPYMLYKDAC 408

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  F++  L    +T
Sbjct: 409 NRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGAFNFQTLKRITKT 468

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY S EA  +  +  
Sbjct: 469 VVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQIA 528

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I + A+ AS ELA+  GAY S+ GS   +G+   D                T+   W 
Sbjct: 529 ETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----------TNLWDWS 578

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  ++GDF V+N  LV
Sbjct: 579 VLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLV 638

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           ++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    LIE A  R  + 
Sbjct: 639 DDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYT 698

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
           DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A      +V+KS L+
Sbjct: 699 DQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKLR 754


>gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa
           nucleopolyhedrovirus]
          Length = 769

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 261/776 (33%), Positives = 430/776 (55%), Gaps = 51/776 (6%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLETALIFSSRT 208
           N K+  + +++  S LQ +S  +         +  +  K +Y G+S  +L+      +  
Sbjct: 14  NGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTEELDMHAARETAN 73

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +     +YA +  R +++ L + V  +  +  ++   H +               V   L
Sbjct: 74  MAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL---------------VSDEL 118

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L  S++  + + L + + +  D+ ++Y G + L + Y   I     E  Q   MRVA+G+
Sbjct: 119 L--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKIAERIQHMLMRVAIGV 176

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387
             ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+ +D + GI+  L
Sbjct: 177 HGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTLREDSITGIYETL 233

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+    V+QGGKRKGA
Sbjct: 234 RDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAVRHVDQGGKRKGA 293

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           +  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  +  W+L  PD  
Sbjct: 294 MAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMCPDRC 353

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L D+YG +F+  Y  YER+      K   ++ A  L++ ++    ETG P++ +KD C
Sbjct: 354 PGLSDVYGNQFDELYAQYEREG-----KQVSQVPARDLFKFIIETQVETGTPYMLYKDAC 408

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  F++  L    +T
Sbjct: 409 NRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGAFNFQTLKRITKT 468

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY S EA  +  +  
Sbjct: 469 VVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQIA 528

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I + A+ AS ELA+  GAY S+ GS   +G+   D                T+   W 
Sbjct: 529 ETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----------TNLWDWS 578

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  ++GDF V+N  LV
Sbjct: 579 VLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLV 638

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           ++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    LIE A  R  + 
Sbjct: 639 DDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYT 698

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
           DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A      +V+KS L+
Sbjct: 699 DQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKLR 754


>gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV]
          Length = 770

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/765 (34%), Positives = 425/765 (55%), Gaps = 37/765 (4%)

Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           +++  +E+ C GL    V+   V     + +Y G++ ++L+  +  ++  +     +Y+ 
Sbjct: 20  KIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIAETAAAMTIDHSDYSL 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMD 275
           + AR  +  L +E   + +             +   Y     + GVK  ++   H +++ 
Sbjct: 80  LAARLAVSNLHKETKDSFF-----------DVIIDMYEAIDPKTGVKTPMISNFHYNIIA 128

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+G+     E 
Sbjct: 129 ANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMRVAIGI---HGED 185

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLA 394
              A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D + GI+  L++ AM++
Sbjct: 186 IDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEGIYDTLKQCAMIS 245

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 246 KSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYLE 305

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ W+L  P +   L D 
Sbjct: 306 PWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMCPMQSPGLADC 365

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EF+  Y+ YE +      +  R++ A  +WR ++    ETG P++ +KD CN +S Q
Sbjct: 366 YGAEFDALYQKYEEEG-----RYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQ 420

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVL 632
            ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D++KL    +   R L
Sbjct: 421 SNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSGVYDFEKLKKITKIVTRNL 480

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S  A E+  +  E I +
Sbjct: 481 NRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYY 540

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA   G Y +++GS   +GV   D       + D +    +    W  LK +
Sbjct: 541 GALEASCELAAIYGPYETYEGSPASRGVLQYD-------MWDNVT--PSDLWDWSMLKSK 591

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  LV +L  
Sbjct: 592 ISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTA 651

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW++ + + + +++GS+  IE IP ++++++ T +E+    LI  A+ R  +IDQ+QS
Sbjct: 652 IGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQS 711

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 712 FNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756


>gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV]
 gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV]
          Length = 770

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/765 (34%), Positives = 425/765 (55%), Gaps = 37/765 (4%)

Query: 161 RLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           +++  +E+ C GL    V+   V     + +Y G++ ++L+  +  ++  +     +Y+ 
Sbjct: 20  KIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIAETAAAMTIDHSDYSL 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMD 275
           + AR  +  L +E   + +             +   Y     + GVK  ++   H +++ 
Sbjct: 80  LAARLAVSNLHKETKDSFF-----------DVIIDMYEAIDPKTGVKTPMISNFHYNIIA 128

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+G+     E 
Sbjct: 129 ANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMRVAIGI---HGED 185

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLA 394
              A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D + GI+  L++ AM++
Sbjct: 186 IDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEGIYDTLKQCAMIS 245

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 246 KSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGGNKRPGAFAVYLE 305

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ W+L  P +   L D 
Sbjct: 306 PWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMCPMQSPGLADC 365

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG EF+  Y+ YE +      +  R++ A  +WR ++    ETG P++ +KD CN +S Q
Sbjct: 366 YGAEFDALYQKYEEEG-----RYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQ 420

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
            ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D++KL    +   R L
Sbjct: 421 SNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSGVYDFEKLKKITKIVTRNL 480

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S  A E+  +  E I +
Sbjct: 481 NRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYY 540

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA   G Y +++GS   +GV   D       + D +    +    W  LK +
Sbjct: 541 GALEASCELAAIYGPYETYEGSPASRGVLQYD-------MWDNVT--PSDLWDWSMLKSK 591

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  LV +L  
Sbjct: 592 ISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTA 651

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW++ + + + +++GS+  IE IP ++++++ T +E+    LI  A+ R  +IDQ+QS
Sbjct: 652 IGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQS 711

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 712 FNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756


>gi|225164891|ref|ZP_03727110.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800505|gb|EEG18882.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 608

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/572 (43%), Positives = 345/572 (60%), Gaps = 42/572 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RN  V  F P KI  A+ KAF++++      S   + + + ++E+       H   
Sbjct: 51  RVIRRNHQVVPFLPQKIEVAVRKAFLSLD----RDSTPAEAVTQAVSERI------HASR 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA--QSHSKSDAPIAPKLK- 146
               H+E+IQD V+  LM++GH+K+   Y++YR  R + RA   Q  + S     P LK 
Sbjct: 101 QAFAHVEEIQDIVQEELMKAGHYKVAEAYIIYRALRHNGRATSIQPDAASAGSEIPDLKP 160

Query: 147 ------------IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGL 193
                       +   DGT + ++   L + +E A  GL   ++   + +   +++YD +
Sbjct: 161 QIRSGDADTMIVVTQPDGTTLLWDRTDLRLRIEFARIGLDLCLTPAEIETALTRSLYDQI 220

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +  DL+  +I +S+TLIE++ ++AK   R  L  +  EVL   +    +    +++  + 
Sbjct: 221 TRRDLDQTIILNSKTLIERDADFAKFAGRIQLTYIYEEVL---HWDIVRDGIGKLKTAHQ 277

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312
             F +++  G     L+  ++D+DL  LA  L    D   ++LG+Q LYDRY +    + 
Sbjct: 278 AAFKKHLAHGAAIHRLNPRLLDYDLDKLAAALDPSADLELDFLGIQTLYDRYLVTDKTTN 337

Query: 313 -----RIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                R+E PQ F+MRVAMGL L +      ++E+R    Y L  S  F  STPTLFNSG
Sbjct: 338 PAAPRRLETPQLFWMRVAMGLFLDDGDPATGQREQRITALYELYKSRRFCSSTPTLFNSG 397

Query: 363 TRHPQLSSCFLTTVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T H QLSSC+L T+ D L  I    + ENA L+K++GGLG  WT VRG GAHI GTNG+S
Sbjct: 398 TLHSQLSSCYLYTIDDSLESIMTRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGES 457

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGVIPFLK+ ND   AVNQGGKRKG+ CAYLETWH D+ EFL+LRKNTGDDRRRTHDMNT
Sbjct: 458 QGVIPFLKLHNDQLNAVNQGGKRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNT 517

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKR+     WTLF   +V DLH+LYG++FE AY  YE  A  G+I   R I+
Sbjct: 518 ANWIPDLFMKRMEAREHWTLFHSSDVPDLHELYGRKFEDAYLRYETLAAEGKIHGHR-IA 576

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           A+ LW+KML+MLFETGH W+TFKD CNIRSPQ
Sbjct: 577 ALDLWKKMLSMLFETGHTWLTFKDACNIRSPQ 608


>gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO]
          Length = 887

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/740 (35%), Positives = 407/740 (55%), Gaps = 40/740 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 63  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                ++     +E     + ++  ++  +VY       +RDF + Y G + L   Y L 
Sbjct: 122 NPATGKHAPMISDEIYNIVMENKDTLNSAIVY-------DRDFQYTYFGFKTLERSYLLR 174

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+
Sbjct: 175 LNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPHPQM 231

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + DD + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP 
Sbjct: 232 SSCFLIAMKDDSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPM 291

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++V N+TA  V+QGG KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIP
Sbjct: 292 IRVFNNTARYVDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIP 351

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I A  LW
Sbjct: 352 DLFMKRVQEDGPWTLFSPSXAPGLDDVWGDEFEELYTRYEREG-RG-----KTIKAQKLW 405

Query: 547 RKMLTMLFETGH--PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
             +L    ETG+  PW  +KD C      QQ++G + SSNLC EI   SS +ETAVCNL 
Sbjct: 406 YAILQAQTETGNTFPWF-YKDACKQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLA 464

Query: 604 SINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           SI L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR I 
Sbjct: 465 SIALPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIA 524

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G      +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   
Sbjct: 525 LGVQGLADTXMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPAS 584

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D                     W+ L+K +   G+RNS  MA  PTA+ + I G
Sbjct: 585 KGILQFDMWN----------AKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILG 634

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +
Sbjct: 635 YNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNV 694

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GL
Sbjct: 695 PQELKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGL 754

Query: 898 KT-TYYLRSRSATSVEKSTL 916
           KT  YYLR+++A++  + T+
Sbjct: 755 KTGMYYLRTQAASAAIQFTI 774


>gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus]
          Length = 766

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/795 (34%), Positives = 418/795 (52%), Gaps = 62/795 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +    +Y G++ ++L+T    ++  +    P+Y+ +  R 
Sbjct: 25  IKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGRI 84

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +  L                H E +  + E      + G+ A  +H ++ D +   L  
Sbjct: 85  AVSSL----------------HKETKESFVETMADLHDYGMVADDVHAAIQD-NAHLLDG 127

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            + Y +D  +++   + L   Y L I+G+ +E  Q   MRVA+G+   + E     ++ Y
Sbjct: 128 AIDYGKDLEYDFFAFKTLEKSYLLKIDGNIVERIQHMLMRVAVGIHKDDIES---VLDTY 184

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
             LS      +TPTLFN+GT + QLSSCFL  + DD + GI+  L++ A ++K++GG+G 
Sbjct: 185 TELSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDSVDGIYDTLKQTAKISKFAGGIGL 244

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  G++I GTNG S G++P L+    TA  +NQ G+RKG+   YLE WH D+ EF
Sbjct: 245 SVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFINQAGRRKGSFAMYLEMWHADILEF 304

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN G++  R  D+    W+ DLFM RV  +  WTL SP +  DL DL+G +F+ AY
Sbjct: 305 LDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDWTLLSPSDAPDLIDLHGADFDRAY 364

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YE         + + I A  L+ K++    ETG P+  FKD CN +S QQH+G + SS
Sbjct: 365 EKYESDG------IGKTIKARTLFAKVVESQIETGGPYYLFKDSCNAKSNQQHLGTIRSS 418

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCH 641
           NLC E+   SS EE AVCNL SINL+ H   ++ FD+++L  T + A++ L+ VID N +
Sbjct: 419 NLCAEVIQYSSKEEIAVCNLASINLVRHVKPDKTFDFERLHKTAKQAIKNLNKVIDANFY 478

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+   SN  HR  GLG+        ++  P+ S EA  +  +  E I   ++ AS+E 
Sbjct: 479 PLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESEEAATLNKQIFETIYHGSVEASIER 538

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G Y SF+GS    G    D  G   EV D       SR  W +++  +KT GMRNS
Sbjct: 539 AKIDGPYESFQGSPASFGKLQFDLWG--HEVDD-------SRHDWTKIRGDLKTYGMRNS 589

Query: 762 NCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              A+ PTA+ A+ C G +++ + S   LY +  +SG+F +VN +L+ EL +  LWD  M
Sbjct: 590 LLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIRELIKLGLWDGEM 649

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +    GS+  IE IP+  + +    +E+    +IE A+ R  +IDQ+QS+N++ + P
Sbjct: 650 KNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAVIEQAAARGPYIDQSQSMNIFFERP 709

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  K+       W +GLKT +YY+RSR                    PV DP   T S  
Sbjct: 710 TVAKISSALFYGWKLGLKTASYYVRSR--------------------PVADPVQFTVSPE 749

Query: 940 IP-SSCTSDTECEVC 953
            P      D EC  C
Sbjct: 750 EPVGDEEDDKECLDC 764


>gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1]
 gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1]
          Length = 765

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/747 (34%), Positives = 406/747 (54%), Gaps = 41/747 (5%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL+   V    +  +    +Y G++ ++L+T    ++  +    P+Y+ +  R 
Sbjct: 25  IKKLCYGLEPNFVDHVAIAQKVISGVYTGVTTTELDTLAAETAAYMAIAHPDYSLLAGRI 84

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            + +L                H E +  + E        G+ A  +H  + D +   L  
Sbjct: 85  AVSRL----------------HKETKESFVETMADLHAYGMVADDVHTVIQD-NAHLLDG 127

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            + Y +D  +++   + L   Y L I+G  +E  Q   MRVA+G+   + E     +E Y
Sbjct: 128 AIDYGKDLEYDFFAFKTLEKSYLLKIDGKIVERIQHMLMRVAVGIHKDDIES---VLETY 184

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
             +S      +TPTLFN+GT + QLSSCFL  + DD + GI+  L++ A ++K++GG+G 
Sbjct: 185 TGMSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDSVDGIYDTLKQTAKISKFAGGIGL 244

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  G++I GTNG S G++P L+    TA  +NQ G+RKG+   YLE WH D+ EF
Sbjct: 245 SVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFINQAGRRKGSFAMYLEVWHADILEF 304

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN G++  R  D+    W+ DLFM+RV  +  WTL SP +  DL DL+G +F+ AY
Sbjct: 305 LDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDWTLLSPSDAPDLIDLHGADFDQAY 364

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + YE         + + I A  L+ K++    ETG P+  FKD CN +S Q+H+G + SS
Sbjct: 365 KKYESNG------IGKTIKARTLFAKVVESQIETGGPYYLFKDACNAKSNQRHLGTIRSS 418

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           NLC E+   SS EE AVCNL SINL+ H  A+  FD+++L  T + A++ L+ VID+N +
Sbjct: 419 NLCAEVIQYSSKEEIAVCNLASINLVRHVRADRTFDFERLHRTAKQAIKNLNKVIDVNFY 478

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+ + SN  HR  GLG+        ++  P+ S EA  +  +  E I   ++ AS+E 
Sbjct: 479 PLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESEEAATLNKQIFETIYHGSVEASIER 538

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G Y SF+GS    G    D  G   EV D       SR  W + K  ++  GMRNS
Sbjct: 539 AKIDGPYESFQGSPASFGKLQFDLWG--HEVDD-------SRHDWTKTKADLQKYGMRNS 589

Query: 762 NCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              A+ PTA+ A+ C G +++ + S   LY +  +SG+F +VN +L+ EL    LWD  M
Sbjct: 590 LLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIKELINLGLWDGEM 649

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +    GS+  IE IP+  + +    +E+    +IE A+ R  +IDQ+QS+N++ + P
Sbjct: 650 KNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAIIEQAAARGPYIDQSQSMNIFFERP 709

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           +  K+       W +GLKT +YY+RSR
Sbjct: 710 TMAKISSALYYGWELGLKTASYYVRSR 736


>gi|15605686|ref|NP_213062.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
 gi|6225952|sp|O66503|RIR1_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2982838|gb|AAC06460.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
          Length = 801

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 279/826 (33%), Positives = 426/826 (51%), Gaps = 122/826 (14%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++ + ++ AC GL +V    + ++      DG++  +++  LI ++   +  E P++   
Sbjct: 19  KIRIAIKFACEGL-NVDPLELEADAQIQFRDGITTKEIQQLLIKTAAEKVSAERPDWTYT 77

Query: 220 TARFLLEKLRREVL----TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
            AR LL  L ++V      ++     K   +  +  Y  +   Y+E+G+    L E+  +
Sbjct: 78  AARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFY-SFVKEYVEKGIYGEYLLENYSE 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE 334
            D   LAN +K ERD  F Y G++ILYDRY +     R IE+PQ  +M +AM LA+ E  
Sbjct: 137 EDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELPQEMYMLIAMTLAVPEKP 196

Query: 335 KE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           +E  K A +FY++LS      +TPTL N+     QLSSCF+ TV DDL+ IF  +++  M
Sbjct: 197 EERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLTVDDDLFDIFDNVKKAGM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K++GGLG     +R  GA I    G S GVIP +K+ NDT   V+Q G RKG+    L
Sbjct: 257 ISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTMTYVDQLGMRKGSASITL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------- 504
           + WH D+ +FL+++ N GD+R++ HD++ A  IPDLFMKR+     WTL  P        
Sbjct: 317 DIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKNREDWTLIDPYWARQYIT 376

Query: 505 -------------------------DEVSD------LHDLYGKEFEIAYENYERQADRGE 533
                                    D   D      L D YG+EFE  Y   E       
Sbjct: 377 RKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGEEFEKWYLELEENLPSYA 436

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC-------- 585
            K   K+++  LW+++LT+ FETG P+I F+D  N ++P +H G+V+SSNLC        
Sbjct: 437 KK---KVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTGMVYSSNLCHEIVQTMS 493

Query: 586 -------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                         EIT    + +  VCNLGS+NL           +++   +   VR+L
Sbjct: 494 PSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNL-----GKVHTEEEIKEVLPLLVRML 548

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVI++N + I +A+ +N  +RAIG+G+  +   L    I + S E ++ AD+  E I+F
Sbjct: 549 DNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWESEEHLKFADKLFELIAF 608

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +A+  S+ELA+ERG Y  F GS W +G+      G   E  +E +    + LPW EL + 
Sbjct: 609 YALKGSLELAKERGRYKLFDGSNWSKGIL----FGRSVEEIEENSRQNGNNLPWRELAEE 664

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RN+  +A+ PT + + I G + SIDP +   Y + NMS                
Sbjct: 665 IKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMS---------------- 708

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQ 869
                              G + ++P ++ +    + TA+ ID  W I +A+ RQKWIDQ
Sbjct: 709 -------------------GILPQVPPEVDRFYWHYKTAYTIDHEWTIRAAAVRQKWIDQ 749

Query: 870 AQSLNLYLDEPS--GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           AQSLNL++D  +  G +L  +Y  AW +GLKT YYLRSRSA  +E+
Sbjct: 750 AQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSAMDIEE 795


>gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/832 (31%), Positives = 443/832 (53%), Gaps = 78/832 (9%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG L      ++ + +E+ C GL    +    +      ++  G++   ++     ++  
Sbjct: 18  DGRLEEVLMDKITLRIEQLCDGLNMDFIDPPEITLYVIGDLCPGITTVQIDNLAAETAAY 77

Query: 209 LIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L  K P++A + AR  +  L +E       V+  +Y    +     M  +   ++   ++
Sbjct: 78  LTTKHPDFAVLAARIAISNLYKETKENFSDVIYDLYNMSNERNQSRMPIISDFHYGIVMK 137

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              +               L N +K++RD+ + Y G + L   Y L I+G  +E PQ   
Sbjct: 138 HADR---------------LNNAIKHDRDYTYSYFGFKTLEKSYLLKIDGKVVERPQHLL 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRV++G+  ++ +    A+E Y+L+S  +F  ++PT+FN+ T  PQLSSCFL     D  
Sbjct: 183 MRVSIGIHGEDIDA---AIETYDLMSLKYFTHASPTMFNASTPRPQLSSCFLVANKSDEL 239

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH--GTNG---------KSQGVIPFLKV 430
             FG   +       S G         G+G H+H  G  G         +S G++  LKV
Sbjct: 240 EDFGKTVKTCAKISQSAG---------GIGVHLHNVGAAGTKWTKYPKCESHGLVEPLKV 290

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            ND A  ++QGG+R GAV  Y+E WH D+  + +LRKNTG+   +T D+  A WIPD FM
Sbjct: 291 LNDLAQYIDQGGRRPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +RV  N  W+L  P +   L D++G +F   Y+ YE +      K++ K + A  LW ++
Sbjct: 351 RRVEANQSWSLMCPRKCPGLSDVWGDDFVKLYKKYEDE------KLYNKQVPARELWFRI 404

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607
           +T   ETG P++ +KD CN +S Q+++G +  SNLCTE+   +S EE AVCNL SI  N+
Sbjct: 405 ITSQIETGMPYMLYKDACNAKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNM 464

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                N ++D++KL    +   R L+ VID+N + + +A+ SN  HR IG+G+ G     
Sbjct: 465 FVK-PNGEYDFEKLLKITKIVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLF 523

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L+  P+ SPE+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   +   
Sbjct: 524 SLMRFPFGSPESRKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYE--- 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +  V+     N      W+ LK+++   G+RNS  +A  PTA+ A I G ++SI+P   
Sbjct: 581 -MWNVKPSSLWN------WEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTT 633

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLY +  +SG+F+V+N  L+N+L + +LW+E M + L +  GS+  I+ IPD++K+++ T
Sbjct: 634 NLYYRRTLSGEFSVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKT 693

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +E+    +++ A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R
Sbjct: 694 NWELSQKIILDMAADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTR 753

Query: 907 SAT-----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            A      +V+KST+       N    T+ N + +   +  S  +   C +C
Sbjct: 754 PAADPIQFTVDKSTVSN-----NVAIQTEKNDALNMEQLVCSLENKDACTMC 800


>gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/640 (39%), Positives = 372/640 (58%), Gaps = 28/640 (4%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD+   Y  ++ L   Y L   GS  E PQ  FMRV++G+  ++      A+E Y 
Sbjct: 142 IDHRRDYELSYFAVKTLQKSYLLV--GS--ETPQYMFMRVSLGIHGQDVNS---AIETYT 194

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
            +S  +F+ ++PTLFNSGT +  LSSCFL  + +D + GI+  L E A+++K SGG+G  
Sbjct: 195 YMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALISKASGGIGLH 254

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
              +R  G+ I  ++G S G++P L+V N+TA  V+QGG KR GA   YLE WH D+ E 
Sbjct: 255 VHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEV 314

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L + YG+EF+  Y
Sbjct: 315 LDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLENCYGEEFKRLY 374

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E+YE  A    +KV R   A  LW  +L    ETG P++ +KD CN +S Q+++G + SS
Sbjct: 375 ESYE--AKGLAMKVVR---AQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIKSS 429

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L+ VID+  + 
Sbjct: 430 NLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNLNKVIDVTAYP 489

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I   A+ ASVELA
Sbjct: 490 LESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELA 549

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRN 760
            + G Y +F GS   +G+   D           L  ++ S L   WDELK++V   GMRN
Sbjct: 550 IKDGPYETFAGSPASKGLLQFD-----------LWNHKPSDLYTDWDELKQKVVKSGMRN 598

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L + +LW++ M
Sbjct: 599 SLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNLWNKQM 658

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ+QSLN+++  P
Sbjct: 659 KDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQSLNIHMRNP 718

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           +  KL   +  AW  GLKT  YYLR++SA+   + T+ G+
Sbjct: 719 TKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGL 758


>gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 378/664 (56%), Gaps = 30/664 (4%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD+   Y  ++ L   Y L   GS  E PQ  FMRV++G+  ++      A+E Y 
Sbjct: 142 IDHRRDYELSYFAVKTLQKSYLLV--GS--ETPQYMFMRVSLGIHGQDVNS---AIETYT 194

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
            +S  +F+ ++PTLFNSGT +  LSSCFL  + +D + GI+  L E A+++K SGG+G  
Sbjct: 195 YMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALISKASGGIGLH 254

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
              +R  G+ I  ++G S G++P L+V N+TA  V+QGG KR GA   YLE WH D+ E 
Sbjct: 255 VHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFEV 314

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L + YG+EF+  Y
Sbjct: 315 LDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLENCYGEEFKRLY 374

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E+YE  A    +KV R   A  LW  +L    ETG P++ +KD CN +S Q+++G + SS
Sbjct: 375 ESYE--AKGLAMKVVR---AQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIKSS 429

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L+ VID+  + 
Sbjct: 430 NLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNLNKVIDVTAYP 489

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I   A+ ASVELA
Sbjct: 490 LESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELA 549

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRN 760
            + G Y +F GS   +G+   D           L  ++ S L   WDELK++V   GMRN
Sbjct: 550 IKDGPYETFAGSPASKGLLQFD-----------LWNHKPSDLYTDWDELKQKVVKSGMRN 598

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L + +LW++ M
Sbjct: 599 SLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNLWNKQM 658

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ QSLN+++  P
Sbjct: 659 KDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQSLNIHMRNP 718

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  KL   +  AW  GLKT  YYLR++SA+   + T+ G+     A P+       + L 
Sbjct: 719 TKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSA--ATPLKRKIDEVYELS 776

Query: 940 IPSS 943
            P +
Sbjct: 777 FPGT 780


>gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Anolis carolinensis]
          Length = 745

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/765 (35%), Positives = 409/765 (53%), Gaps = 98/765 (12%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNVDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRRE---VLTTV------YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  L +E   V + V      Y  P  + H  M            +E +   L ++  +
Sbjct: 82  AVSNLHKETKKVFSDVMEDLYTYVNPHNSKHSPM----------IAKETLDIVLANKDRL 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           +  ++Y       +RDF++ Y G + L   Y L IN    E PQ   MRV++G+   + +
Sbjct: 132 NSAIIY-------DRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVGIHKNDID 184

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAML 393
               A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L+  A++
Sbjct: 185 A---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKHCALI 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           +K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YL
Sbjct: 242 SKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYL 301

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +
Sbjct: 302 EPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDE 361

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           ++G+EFE  YE+YE+Q      +V R + A  LW  ++    ETG P++ +KD CN +S 
Sbjct: 362 VWGEEFEKLYESYEKQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSN 416

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           QQ++G +  SNLCTEI   +S++E  V                                 
Sbjct: 417 QQNLGTIKCSNLCTEIVEYTSNDEAEV--------------------------------- 443

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                           SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I +
Sbjct: 444 ----------------SNKRHRPIGIGVQGLADAFILMRFPFESPEAQLLNQQIFETIYY 487

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS  LA+E G Y +++G    +G+   D   ++           T    W  LK++
Sbjct: 488 AALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVP----------TDLWDWKALKEK 537

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +
Sbjct: 538 IAKHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTE 597

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LW+E M + +   +GSI  I  IPDDLK ++ T +EI    +++ A+ R  +IDQ+QS
Sbjct: 598 RGLWNEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVLKMAADRGAFIDQSQS 657

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           LN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 658 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 702


>gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 780

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/678 (38%), Positives = 394/678 (58%), Gaps = 39/678 (5%)

Query: 285 LKYERDFAFEYLGLQILYD-RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           + Y+ D  + Y GL  L + +Y + ++   +E PQ   MRVA+ +   + E    A+E Y
Sbjct: 133 ISYDFDKHYTYFGLMTLIEGKYLMRVDNIVVERPQHMLMRVALQIHGDDIES---AIESY 189

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
            L+ +  F  ++PTLF+SG + PQ+SSC+L  + +D + GI+  L + AM++K+ GG+G 
Sbjct: 190 RLMRAKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGIYKTLNDCAMISKHGGGIGL 249

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + T +R   + I  TNG + G+ P L+V N     V+QGGKRKGA+  Y+E WH DV  F
Sbjct: 250 NVTQIRATNSKIESTNGTAAGLGPALRVFNSMLRHVDQGGKRKGAMTVYIEPWHADVFTF 309

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL++N G +  +  D+  A W PDLFMKRV     W+L  PDE   L+D YG+EFE  Y
Sbjct: 310 LDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGKWSLMCPDECPGLNDCYGQEFEDLY 369

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           ENYE      E K  ++ISA+ L RK++    ETG P++ FKD  N ++ Q++ GV+ +S
Sbjct: 370 ENYE-----AEGKFKKQISALDLHRKIIETQVETGAPYMMFKDHVNNKNNQKNEGVIRNS 424

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDIN 639
           NLC EI   S + ETAVCNL SI  + +FAN Q   FD+  L +  R     L+ +ID+N
Sbjct: 425 NLCAEIVQYSDNRETAVCNLASI-AVNNFANKQFKSFDFKSLYNVSRVVTNNLNKIIDLN 483

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +  A+ SN  HR IG+G+ G      +L +PY S EA ++  +  E I + A+S S+
Sbjct: 484 FYPLASAQASNFRHRPIGIGIQGLADTFAILDMPYDSQEARDLNKKISETIYYGALSQSI 543

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKTIGM 758
           ELA+  G Y S+ GS       P  S GLL    D   +N+++ L  WDELK+ +   G+
Sbjct: 544 ELAKLHGTYDSYDGS-------PA-SCGLLQ--FDLWNINQSNDLWNWDELKREMAMHGL 593

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTAT A I G ++S +P   NLYV+  +SG++ VVN  LV++L   +++  
Sbjct: 594 RNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQVVNQHLVDKLVDTNVYST 653

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            ++  +  ++GS+ NI+ IP ++K +  TA+EI    +++ A+ R  +IDQ+QSLNL++ 
Sbjct: 654 DIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEIKQKVVLDMAAERGPYIDQSQSLNLFVA 713

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-NSSTH 936
            P+ K L  I+  +W  GLKT  YYLR++ A +  + T          VP +   N + +
Sbjct: 714 NPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAANTIQFT----------VPSSSAINRANN 763

Query: 937 SLGIPSSCTSDTECEVCQ 954
              +  +C     CE CQ
Sbjct: 764 EPDVVDACY--IGCESCQ 779


>gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica]
 gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica]
          Length = 849

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/805 (33%), Positives = 428/805 (53%), Gaps = 69/805 (8%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231
           VS+  +  +T    +DG+S  +L      ++  L+ + P+Y  + AR  +  L ++    
Sbjct: 33  VSATEIAQKTVDGAFDGVSTVELNNLASETAAALMTRHPDYGVLAARLSVSNLHKQTSDK 92

Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
              V+  +Y    +   H                 V   LL  +    + + LA  + Y 
Sbjct: 93  FVNVMQQLYDNKDETGEHAPL--------------VTLALLERAQNHGETLELA--ISYY 136

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD  + Y G + L   Y L + G+ +E PQ   MRVA+G+   +  K +   E Y  LS 
Sbjct: 137 RDMTYSYFGFKTLEKSYLLRVGGNVVERPQHMLMRVALGIHGDDIFKVR---ETYQALSL 193

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  ++PTLFN+GT   QLSSCFL  +  D + GI+  L+  A ++K +GG+G     +
Sbjct: 194 RKFTHASPTLFNAGTPQGQLSSCFLVAMAADSIDGIYDTLKTCAQISKTAGGIGLHIHNI 253

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I G+ G+S G++P L+V N+TA  V+QGG KR GA   YLE WH D+ +FL+LR
Sbjct: 254 RAKGALITGSQGRSSGIVPMLRVFNNTARYVDQGGNKRPGAFAVYLEPWHADILDFLNLR 313

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W+PDLFM++V     W+LF P +   L D++G+EF+  YE+YE
Sbjct: 314 KNHGAEENRARDLFYALWVPDLFMRKVENGEKWSLFCPRKAPGLADVWGEEFDRKYEDYE 373

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +          +I A  L++ +LT   ETG P++ +KD CN +S Q+++G + SSNLCT
Sbjct: 374 SKGLYNS-----QIDAQELFKAILTSQIETGGPFMLYKDSCNAKSNQKNLGTIKSSNLCT 428

Query: 587 EITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           EI   SS +E AVCNL S+ L        ++  +++ +L  T++   R L+ +I+ NC+ 
Sbjct: 429 EIVQYSSPDEVAVCNLASVALPEFVQLKGSSGSYNFGELHETVKHMTRNLNCIIEANCYP 488

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++A+ SN  HR I +G+ G       L +P+ SPEA E+     E I   A  AS+ELA
Sbjct: 489 VKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSPEAAELNVLIFETIYHAACEASIELA 548

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD--ELKKRVKTIGMRN 760
            E G Y +++GS   QG    D              N+T    WD   LK ++   GMRN
Sbjct: 549 AELGPYETYEGSPASQGKLQFD------------LWNKTPSDLWDWARLKTKLAKHGMRN 596

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTA+ + I G ++  +P   N+Y++   +G+F VVN +L+ +L +  +W E M
Sbjct: 597 SLLVAPMPTASTSQILGHNECFEPYTSNIYLRRVQAGEFLVVNQWLMKDLIKLGMWTEEM 656

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + + + +GSI +I +IP+ ++ ++ TA+EI    +I+ A+ R  +IDQ+QSLN+++ E 
Sbjct: 657 KNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKARNIIDMAAARAPYIDQSQSLNIFMPEI 716

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAV-PVT---- 929
           +  K+  ++   W  GLKT  YYLR+  A      +V+K+ L+ +   +  V PV     
Sbjct: 717 THGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQFTVDKTLLQNIQDPVGEVDPVVYEPP 776

Query: 930 -------DPNSSTHSLGIPSSCTSD 947
                   P+  +     PSS + D
Sbjct: 777 SMPWASESPSGPSTRASTPSSLSRD 801


>gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis]
          Length = 855

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/648 (39%), Positives = 375/648 (57%), Gaps = 22/648 (3%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           RD+ F Y G + L   Y +  N  +  E PQ  FMRVA+ +     +     +E + L+S
Sbjct: 157 RDYNFTYFGWKTLCKSYLMKRNNEQTHETPQFMFMRVALAIH-GPFDDIDSVLETFELMS 215

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTP 406
             +F+ ++PTL NSGT +  LSSCFL  + DD + GI+  L + A+++K SGG+G   + 
Sbjct: 216 QKYFIHASPTLCNSGTVNQYLSSCFLVGMEDDSIDGIYKTLHKTALISKASGGVGIHVSN 275

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDL 465
           +R  GA+I G+NG S G++P L+V N+TA  V+QGG KR GA C YLE WH D+ +FL L
Sbjct: 276 IRANGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNKRPGAFCIYLEPWHADIIDFLQL 335

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RKN G +  R  D+  A WIPDLFMKRV  N  W++FSPDE   L D YG EF+  YE Y
Sbjct: 336 RKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFSPDEAPGLTDCYGDEFDKLYERY 395

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E+     E+   +K+ A  +W ++L    ETG P++ +KD CN +S Q+++GV+ SSNLC
Sbjct: 396 EK-----ELIPRKKMKAQQIWSEILQSQTETGVPFMLYKDACNKKSNQKNLGVIKSSNLC 450

Query: 586 TEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            EI   SS EE AVCNL S+ L     L+      FD+ KL   ++  V+ LD  ID+  
Sbjct: 451 CEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDFVKLHHVVKVLVKNLDRTIDVGK 510

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +A+  N  +R + +G+ G      L   P+ S +A  +  +  E I   AI AS E
Sbjct: 511 YPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVDAATLNKQIFETIYHAAIEASTE 570

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMR 759
           LA+  G Y SF GS   +G    D   L  +    L  +      WD LK R+ K  G+R
Sbjct: 571 LAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLFDD------WDSLKSRITKGKGLR 624

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +   PTA+ + I G ++S +P   N+Y +  +SG+FT++N ++V++  Q  +W+E 
Sbjct: 625 NSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSGEFTIINQYMVDDFCQLGIWNEK 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           + + +   +GSI  IE IP+++K ++ T +E     +I+ +S R  +IDQ+QSLNLYL E
Sbjct: 685 LKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMIDLSSDRAPFIDQSQSLNLYLRE 744

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV 926
           P+  KL  ++   W  GLKT  YYLR+++A+   + TL   +  L+ V
Sbjct: 745 PTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTLNDENTLLDKV 792


>gi|163781847|ref|ZP_02176847.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883067|gb|EDP76571.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 767

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 281/813 (34%), Positives = 432/813 (53%), Gaps = 96/813 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++   G     +  ++ + +E A  GL +V    + ++      DG++  +++  LI 
Sbjct: 1   MEVVKRSGKREQLDINKIRIALEFAFKGL-NVDPLELETDAQIQFRDGITTEEIQAVLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV-----------LTTVYKKPQKATHHEMQCLY 252
           ++   +  E P++    AR LL  L ++V           L+  YK       +  +  Y
Sbjct: 60  TAAEKVSPETPDWQFAAARLLLYDLYKKVAHIRGYEVRDELSKDYKP------YNTEGFY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E+  R++ EG+    L +   + D+  LA  +K ERD  F Y G++IL DRY       
Sbjct: 114 -EFINRFVGEGIYGDYLLKHYSESDIRDLAKHIKPERDLYFNYTGIKILTDRYLARDEDG 172

Query: 313 RI-EMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           RI E+PQ  +M ++M LA+  KE ++ K A EFY+LLS      +TPTL N+     QLS
Sbjct: 173 RIIELPQEMYMLISMTLAIPEKEGDRVKWAKEFYDLLSEHLITVATPTLMNARRPFTQLS 232

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ TV DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S G+IP +K
Sbjct: 233 SCFILTVDDDLYDIFDNVQKAAQISKHAGGLGIYIGKLRATGAPIRKFKGASSGIIPVVK 292

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V ND    V+Q G RKG+    L+ WH D+ +FL+++ N GD+R++ HD++ A  IPDLF
Sbjct: 293 VINDVMTYVDQLGMRKGSASITLDIWHKDILDFLEVKTNAGDERKKAHDIHPAISIPDLF 352

Query: 490 MKRVTQNAGWTLFSP------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           MKRV     WTL  P       +  +L DL+G+ FE  YE  E++      K   ++ A 
Sbjct: 353 MKRVKNREKWTLLDPYYTKNVRDGKNLEDLWGEAFEEEYERLEKELPEDAKK---EVDAF 409

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------- 593
            LW+++LT+ FETG P++ F+D  N  +P +H G+V+SSNLC EI  N S          
Sbjct: 410 ELWKRLLTVAFETGEPYLFFRDHANRINPNKHAGMVYSSNLCHEIVQNMSPTKHLGKELD 469

Query: 594 -----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                      S +  VCNLGS+NL        +  + +   +   VR+LDNVI++N + 
Sbjct: 470 PETGEIVHRKKSGDVVVCNLGSVNL-----GKVYTKETMEQVVPKLVRLLDNVIEMNYYA 524

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I +A+ +N  +RAIG+G+  +   L    + + S + ++ AD+  E + F+AI  S+ELA
Sbjct: 525 IPEAEYTNKRYRAIGIGVSNYHYCLVKNGVNWESEDHLKFADKLFELLGFYAIKGSMELA 584

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG Y  F+GS W +G+F     G  AE  +E +    + LPW +L + V+  G+RNS 
Sbjct: 585 KERGKYRLFEGSDWSRGIF----FGRKAEELEENSKENGNDLPWKDLAEDVRENGIRNSY 640

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+ PT + + I G + S+DP +   Y + NMSG    V   +      R  W      
Sbjct: 641 LLALMPTGSTSLILGATPSVDPIFAKYYKEENMSGILPQVPPEI-----DRFFWH----- 690

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EP 880
                                 + +A+ ID  W++ +A+ RQKWIDQAQSLNL++D  + 
Sbjct: 691 ----------------------YKSAYNIDQEWVVRAAAVRQKWIDQAQSLNLFIDPEKI 728

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            G  L  IY+ AW +GLKT YYLRS+S T +E+
Sbjct: 729 DGPTLSKIYQLAWELGLKTIYYLRSKSITDIEE 761


>gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
          Length = 779

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/632 (38%), Positives = 371/632 (58%), Gaps = 22/632 (3%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+ +++ G + L + Y L I+    E PQ   MRVA+G+   + +    A+E Y ++S  
Sbjct: 133 DYTYKFFGYKTLENGYLLKIDNQVAERPQHMLMRVALGIHGDDIQD---AIETYRMMSRK 189

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLF++GT   Q+ SCFL  +  D + GI+  L + A ++KY GGLG +   VR
Sbjct: 190 MFTHASPTLFSAGTPMAQMCSCFLLGIRSDSIDGIYETLGDCAAISKYGGGLGVNVHCVR 249

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I+ TNG + GV P ++V N+    V+QGGKRKGA+  Y+E WH D+   L+L++N
Sbjct: 250 SRGTRINSTNGVASGVEPMVRVFNNMVRHVDQGGKRKGALAVYIEPWHADIYSVLNLKRN 309

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G +  +  D+  A W+PDLFM+RV  N  W+L  P++   L D YG  FE  Y  YE +
Sbjct: 310 MGAEDCKARDLMYALWVPDLFMERVNANGVWSLMCPNKCPGLSDCYGSAFEELYRKYEEE 369

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +  +++ A  L R ++    ETG P++ +KD CN +S QQ++G +  SNLC EI
Sbjct: 370 G-----RYQQQVRAQDLHRFIVETQVETGGPYMLYKDACNRKSNQQNLGTIKCSNLCAEI 424

Query: 589 TLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
              S +EETAVCNL SI  N        +FD++KL    +  VR L+ +ID N + IE A
Sbjct: 425 VQYSDAEETAVCNLASIAVNSCVVVDEARFDFEKLRHITKVVVRNLNKIIDRNRYPIESA 484

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR IG+G+ G   A  LL +PY S EA+ +  +  E I F A+ AS ELA+  G
Sbjct: 485 RMSNMKHRPIGVGIQGLADAFVLLRMPYESDEAMLLNRQIAETIYFGALEASCELAKTWG 544

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +YSSF+GS   +G+   D    + +VR       TS   W  LK+ +K  G+RNS  +A 
Sbjct: 545 SYSSFQGSPASEGILQYD----MWDVRP------TSLWDWGTLKEDIKKHGLRNSLLVAY 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTAT A I G ++S +P   N+Y++  ++G+F VVN +L+++L +  L+   M + +  
Sbjct: 595 MPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIDDLIKLKLYTSEMRNAIFA 654

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           H GSI  I+ IPD +K+++ TA+E+    +IE A+ R  +IDQ+QSLNL++ EP+   + 
Sbjct: 655 HKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIEMAADRNAFIDQSQSLNLFVAEPTYALMT 714

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            I+   W  GLKT  YYLR++ A   ++ T++
Sbjct: 715 SIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVE 746


>gi|9632159|ref|NP_048985.1| hypothetical protein PBCV1_A629R [Paramecium bursaria Chlorella
           virus 1]
 gi|2447101|gb|AAC96959.1| similar to Schizosaccharomyces ribonucleotide reductase M1 chain,
           corresponds to Swiss-Prot Accession Number P36602
           [Paramecium bursaria Chlorella virus 1]
          Length = 771

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 272/747 (36%), Positives = 415/747 (55%), Gaps = 48/747 (6%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
           A +GL    SKIV S    ++ DG+S   L+      S ++  + P+Y  + AR  +  L
Sbjct: 53  AMTGLNVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 111

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---- 284
                       QK TH ++   Y E           A LL+E   + +L   A++    
Sbjct: 112 ------------QKQTHDKITDAYAEI----------AHLLNEDFKE-NLEKHADEYQAF 148

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y+RD+ F+Y G + +   Y   +    +E PQ  ++RVA+GL   +  K K   E Y+
Sbjct: 149 VDYDRDYDFDYFGFKTMERLYLTKVGDKIVERPQHVYLRVAIGLWGSDIAKVK---ETYD 205

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            LS   F  ++PTLFNSG +  QL+SCFL TV D L  I+ AL + A L+K+ GGLG + 
Sbjct: 206 ALSCRKFTHASPTLFNSGFKKAQLASCFLMTVEDSLADIYKALGDCAQLSKHGGGLGINI 265

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +RG GA I+GTNG+S G++P LKV + T+   NQGG+RKG+   YLE  H D+ +FL 
Sbjct: 266 SDIRGRGAMINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDIMDFLL 325

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +++N G++  R  ++  A W+ DLFMKRV  +A W+LF P E   L D +G E+   Y  
Sbjct: 326 MKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYTR 385

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           YE      E K    + A  +W  M+T + ETG P++  KD  N ++ Q + G +  SNL
Sbjct: 386 YE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDTVNKKNMQSNAGTIRGSNL 440

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI   +S EETAVC +GS+ L  +  N++FD+D L   ++   + LD  ID+  + I+
Sbjct: 441 CIEILEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIK 500

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A+ SN   R IG+G+ G Q     L +P+ SPEA ++  E  E I + A+ ASVELA+ 
Sbjct: 501 EAETSNKRRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEI 560

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G + +F+GS   +G+       +  +          S L W  L++RVK  G+RNS   
Sbjct: 561 HGPHPTFEGSPASKGILQYHMWDVTPK----------SNLDWRGLEERVKK-GVRNSLLT 609

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PTA+ A ICG  ++ +P   NLY +  ++G+F VVNS+LV EL +R  W E M + +
Sbjct: 610 ALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSENMKNQI 669

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             + GSI  +  I   +K ++ TA+++    +I+ A+ R  ++DQ QS+NL+L +P+ K 
Sbjct: 670 IANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKN 729

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATS 910
           +  +    W  GLK+  YYLRS+ A+S
Sbjct: 730 VTSMLFYGWKSGLKSLQYYLRSKPASS 756


>gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
 gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
          Length = 772

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 389/675 (57%), Gaps = 34/675 (5%)

Query: 285 LKYERDFAFEYLGLQILYDR-YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           + Y+ D  + Y GL  + +  Y + +N   +E PQ   MRVA+ +  ++ E    A+E Y
Sbjct: 126 ISYDFDKQYTYFGLMTMIEGGYLMRVNNVTVERPQHMLMRVALQIHGEDIES---AIESY 182

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
            L+ S  F  ++PTLF+SG + PQ+SSC+L  + +D + GI+  L + AM++K+ GG+G 
Sbjct: 183 RLMRSKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGIYKTLNDCAMISKHGGGIGL 242

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R   + I  TNG + G+ P L+V N     V+QGGKRKGA+  Y+E WH D+  F
Sbjct: 243 NVSQIRAANSKIKSTNGTAAGLGPALRVFNSMLRHVDQGGKRKGALAVYIEPWHADIFTF 302

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL++N G +  +  D+  A W P LFMKRV+    W+L  PDE   L+D YG+EFE  Y
Sbjct: 303 LDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMCPDECPGLNDCYGEEFERLY 362

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E+YE Q      K   +I A+ L RK++ +  ETG P++  KD  N ++ Q+++GV+ +S
Sbjct: 363 ESYETQG-----KFKEQILALDLHRKIIEIQVETGGPYMLHKDNVNEKNNQKNLGVIRNS 417

Query: 583 NLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           NLC EI   S ++ETAVCNL SI  N  A+     FD++ L    R     L+ +ID N 
Sbjct: 418 NLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDFESLYKVARVVTNNLNKIIDKNF 477

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + +  A+ SN  HR IG+G+ G   A  +L++PY S +A E+  +  E I + A+S S+E
Sbjct: 478 YPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQARELNRKISETIYYGALSQSIE 537

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+  GAY S+ GS    G    D +  +++  D           WDELK+++   G+RN
Sbjct: 538 LAKLHGAYDSYNGSPASSGHLQFD-LWNISQSND--------LWNWDELKRQMAIHGLRN 588

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  +A  PTAT A I G ++S +P   NLYV+  +SG++ +VN  LV++L   +++   +
Sbjct: 589 SLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQIVNQHLVDKLVDCNVYSTEL 648

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           +  +  ++GS+ NI+ IP D+K +  TA+EI    L+  A+ R  +IDQ+QSLNL++  P
Sbjct: 649 MMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLNMAADRGPYIDQSQSLNLFVANP 708

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           S K L  I+  +W  GLKT  YYLR++ A +  + T+       ++ P T P++    L 
Sbjct: 709 SYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFTVP------SSSPFTKPSTDDAEL- 761

Query: 940 IPSSCTSDTECEVCQ 954
                T    CE CQ
Sbjct: 762 -----TCYVGCESCQ 771


>gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
 gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
          Length = 773

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 273/772 (35%), Positives = 421/772 (54%), Gaps = 51/772 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V + C GL    V    V     + +Y G++  +L+     +   +    P+Y+ + AR 
Sbjct: 22  VRKLCEGLDSDFVDPVEVTMRVNQGIYAGVTTVELDLLAAETCAFMSTNHPDYSILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            L  L +E  +      QK   +    + PE           A L+ E +       +AN
Sbjct: 82  CLSNLYKETESCYKTLVQKMREY----VNPE-------TSQHAPLVSEELASV----VAN 126

Query: 284 DLKYERDFA------FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
           + K  ++        ++Y   + L   Y L ++G   E P    MRVA+G+   +     
Sbjct: 127 NSKVIQEALDEVLENYDYFAFKTLEKSYLLKMDGRVSERPHQLLMRVAIGIHGHDMPNVL 186

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKY 396
           RA   +  +    +  +TPTLFN+GT  PQ+SSCFL T   D + GIF +L++ A ++KY
Sbjct: 187 RA---FRDMRDKRYTMATPTLFNAGTPVPQMSSCFLMTNKADSISGIFDSLKDCATISKY 243

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     VR  G++I GTNG S G++P L+V N+ A  V+QGG +RKG+   YLE W
Sbjct: 244 AGGIGISVHDVRARGSYIRGTNGTSNGLVPMLRVFNNAARYVDQGGGRRKGSFAVYLEPW 303

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DV+ F+DLRKN G+D  R  D+  A W+PDLFMKRV +N+ W+LF P+E   L D+ G
Sbjct: 304 HADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWSLFCPNECPGLSDVCG 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
             FE  Y  YE Q      K  + + A  LW +++ +  ETG P+I FKD  N +S QQH
Sbjct: 364 SRFEDLYARYESQG-----KARKVMDARKLWDQIVDVQVETGTPYILFKDSVNAKSNQQH 418

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-----AHFANNQFDYDKLASTIRTAVR 630
           +GV+ SSNLCTEI   +S +E AVCNLGSINL      A+ +   FD ++L +     V 
Sbjct: 419 LGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTASFDLEELVNFAGRMVL 478

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VID N + + +A+ SN  HR IG+G+ GF  AL ++ +PY S +A  +     E I
Sbjct: 479 NLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYDSVDAAGLNLNIFESI 538

Query: 691 SFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            + A+  SV LA+ + G + SF+GS  +QG+F  D  G+            +    W+ L
Sbjct: 539 YYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWGV----------KPSGLYDWEAL 588

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V   G++N+  +A  PTA+ A I G ++S +P   N+Y +  ++G+F V+N  L+ +
Sbjct: 589 RADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRVLAGEFPVINKHLLRD 648

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L    +W + + + L   +GS+ NI +IP+D+K ++ T +EI    +++ A+ R  +I Q
Sbjct: 649 LTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQRVILDHAAARGPFICQ 708

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR-SATSVEKSTLKGV 919
           +QS+N+++ EPS  K+  +    W  GLKT  YYLR+R  A S++ +  K V
Sbjct: 709 SQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQFALEKSV 760


>gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
 gi|74854399|sp|Q54Q71|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
          Length = 870

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 277/797 (34%), Positives = 422/797 (52%), Gaps = 49/797 (6%)

Query: 144 KLKIMMDDGTL--ISFN--SKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDL 198
           K+ ++  DGT   +SF+  + R+  + E       D+   I V  +    ++ G+  ++L
Sbjct: 15  KMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTEL 74

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV---LTTVYKKPQKATHHEMQCLYPEY 255
           +     ++  +  + P+Y  + AR  +  L ++         KK  +  + +   L P  
Sbjct: 75  DNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLV 134

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
                E  +K     ES++D           Y RDF +++ G + L   Y   ING  +E
Sbjct: 135 SKELYEIVMKHGERLESVID-----------YYRDFDYDFFGFKTLERSYLHRINGKIVE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ   MRV++G+  ++ E    A+  Y  LS   F  +TPTLFN+GT  PQ+SSCFL  
Sbjct: 184 RPQHMLMRVSIGIHGEDLES---AINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQ 240

Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           + +D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P L+V NDT
Sbjct: 241 MKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDT 300

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KRKGA   YLE WH DV EF+DL+KNTG +  R  D+  A W+ D+FM+RV
Sbjct: 301 ARYVDQGGGKRKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERV 360

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            QN  W LF P+E   L + + +E    Y  YE   D       R I A  LW  ++   
Sbjct: 361 EQNGDWALFCPNEAPGLAETHSEEHRALYLKYEATPDLPR----RVIKAQELWFAIMESQ 416

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
            ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      
Sbjct: 417 VETGTPFILYKDACNAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQ 476

Query: 612 -------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                     +FD+  L    +     L+ +ID N + + +AK SN  HR IG+G+ G  
Sbjct: 477 KVGSTDPKEKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLA 536

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                + +P+ S  A ++  E  E I F A++AS ELA   G Y SFKGS   +G+   D
Sbjct: 537 DVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFD 596

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              +            +SR  W ELK   V   G+RNS  +A  PTA+ + I G ++  +
Sbjct: 597 MWNVTP----------SSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFE 646

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y +  ++G+FT+VN  L+ +L +  +W   M + +    GSI +I  IPDDLK+
Sbjct: 647 PYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKE 706

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           ++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  +W  GLKT  YY
Sbjct: 707 LYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYY 766

Query: 903 LRSRSATSVEKSTLKGV 919
           LR+R A    + T+  +
Sbjct: 767 LRTRPAADAIQFTVDPI 783


>gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 767

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 271/753 (35%), Positives = 420/753 (55%), Gaps = 48/753 (6%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
           A +GL    SKIV S    ++ DG+S   L+      S ++  + P+Y  + AR  +  L
Sbjct: 49  AMTGLSVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 107

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND---- 284
                       QK TH ++   Y E           A LL +   + ++   A++    
Sbjct: 108 ------------QKQTHDKITDAYAEI----------AHLLSDDFKE-NIEKHADEYQSF 144

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y+RD+ F+Y G + +   Y   +N   +E PQ  ++RVA+GL   +  + K   E Y+
Sbjct: 145 IDYDRDYDFDYFGFKTMERLYLTKVNNKIVERPQHVYLRVAIGLWGSDIARVK---ETYD 201

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            LS   F  ++PTLFN+G +  QL+SCFL TV D L  I+  L + A L+K+ GGLG + 
Sbjct: 202 ALSCRKFTHASPTLFNAGFKKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINI 261

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +RG G+ I+GTNG+S G++P LKV + T+   NQGG+RKG+   YLE  H DV +FL 
Sbjct: 262 SEIRGRGSRINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDVMDFLL 321

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +++N G++  R  ++  A W+ DLFMKRV  +A W+LF P E   L D +G E+   YE 
Sbjct: 322 MKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYER 381

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           YE      E K    + A  +W  M+T + ETG P+++ KD  N ++ Q + G +  SNL
Sbjct: 382 YE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNL 436

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI   +S EETAVC +GS+ L  +  N++FD+D L   ++   + LD  ID+  + I+
Sbjct: 437 CNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIK 496

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A+ SN   R IG+G+ G Q     L +P+ S EA ++  E  E I + A+ AS+ELA+ 
Sbjct: 497 EAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEI 556

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +F+GS   +G+        L +V  +      S L W  L++RVK  G+RNS   
Sbjct: 557 HGPYPTFEGSPASKGILQYH----LWDVTPK------SNLDWRGLEERVKK-GVRNSLVT 605

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PTA+ A ICG  ++ +P   NLY +  ++G+F VVNS+LV EL +R  W E+M + +
Sbjct: 606 ALMPTASTAQICGSIEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSESMKNQI 665

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             + GSI  +  I   +K ++ TA+++    +I+ A+ R  ++DQ QS+NL+L +P+ K 
Sbjct: 666 IANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKN 725

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +  +    W  GLKT  YYLRS+ ++S    T+
Sbjct: 726 VTSMLFYGWKSGLKTLQYYLRSKPSSSAIAVTI 758


>gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
 gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
          Length = 855

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/765 (34%), Positives = 415/765 (54%), Gaps = 51/765 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V  +    ++ G+  ++L+     ++  +  + P+Y  + AR  +  L ++  T++    
Sbjct: 57  VAQKVISGVFPGVKTTELDNLAAETAAYMSTRHPDYGVLAARISVSNLHKQTSTSL---- 112

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV-----YLANDLKYERDFAFEY 295
                  ++ +  +Y     +  + A L+ + +  +D+V      L   + Y+RDF +++
Sbjct: 113 -------VETVKIQYEYINSKTNLPAPLVSKEL--YDIVNEHAERLEKAIDYQRDFDYDF 163

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y   IN S +E PQ   MRV++G+   + +    A+  Y  LS   F  +T
Sbjct: 164 FGFKTLERSYLHRINNSIVERPQHMLMRVSIGIHGNDIDN---AILTYEKLSQKLFTHAT 220

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT +PQ+SSCFL  + +D + GI+  L++ A+++K +GG+G     +R   ++I
Sbjct: 221 PTLFNAGTPYPQMSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIACHKIRAAQSYI 280

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EF++L+KN G + 
Sbjct: 281 RGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFIELKKNHGKEE 340

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+ DLFM+RV QN  W+LF P+E   L + + +E    Y  YE       
Sbjct: 341 MRARDLFYALWVSDLFMERVEQNGDWSLFCPNEAPRLDETHSEEHRELYLKYENTPGLAR 400

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               R I A  LW  ++    ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S
Sbjct: 401 ----RVIKAQELWFAIMESQVETGTPFILYKDSCNSKSNQKNLGTISSSNLCTEIIQYTS 456

Query: 594 SEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            +E AVCNL SI L                +FD+ KL    +   + L+ +ID N + ++
Sbjct: 457 PDEIAVCNLASIALPKFIRRKEGSTNPKEKEFDHQKLYEITKIVTKNLNKIIDRNYYPVQ 516

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +AK SN  HR IG+G+ G       L +P+    A ++  E  E I F A++AS EL+  
Sbjct: 517 EAKTSNLRHRPIGIGIQGLADVFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLI 576

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK-KRVKTIGMRNSNC 763
            G Y +FKGS   QG+   D   +            T+R  W +LK K V   G+RNS  
Sbjct: 577 EGPYETFKGSPASQGILQYDFWNVTP----------TNRWNWTDLKDKIVNKGGLRNSLL 626

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A  PTA+ + I G ++  +P   N+Y +  ++G+FT+VN  L+ +L +  +W   + + 
Sbjct: 627 IAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQ 686

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +  + GSI +I  IPDDLK+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  
Sbjct: 687 IVLNRGSIQSIPSIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFA 746

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           KL  ++  +W  GLKT  YYLR+R A    + T   VD  +   P
Sbjct: 747 KLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFT---VDPTVQQTP 788


>gi|22788802|ref|NP_690514.1| Rr1 [Heliothis zea virus 1]
 gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1]
          Length = 939

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/740 (34%), Positives = 412/740 (55%), Gaps = 53/740 (7%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++++  K +YD +S  +L+T L  +  ++    P+++ + AR  ++ L        +K+ 
Sbjct: 48  IVADVEKGLYDRVSTLELDTLLSETCASMSTAHPDHSILAARIAMQAL--------HKRT 99

Query: 241 QKATHHEMQCLY-----PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF-AFE 294
           +      ++ LY     P+Y+   ++E       H   +D  +V        +RDF +  
Sbjct: 100 RSKFSETIRDLYEANIVPQYYFDLVQE-------HADTLDSAIVD-------DRDFQSLT 145

Query: 295 YLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           Y   + L   Y + +   +I E  Q  +MR A+G+  ++ E     +E YNLLS+ +++ 
Sbjct: 146 YFAYKTLERTYLIKLADGKICERVQHMYMRTALGIHGRDIES---VIETYNLLSNRYYVH 202

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           STPTL ++ T     +SC+L  + +D + G+   L++ A ++K+ GG+G     +R   +
Sbjct: 203 STPTLCHAATNRSNYASCYLLELKEDSIGGVMDTLKDAATISKHCGGVGLHVHKLRCKNS 262

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            IH TNG + G++P L++ N  +  V QGG KR GA+  YLE WH DV +F+++RKN+G 
Sbjct: 263 TIHSTNGNASGLVPMLRMYNAMSRYVTQGGNKRPGAIAVYLEPWHADVFDFIEMRKNSGF 322

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A W+PDLFMKRV     W+L  PD    L D +G+EFE  Y  YE++   
Sbjct: 323 EEARARDLFYALWVPDLFMKRVNDGGYWSLMCPDSSPGLSDCWGEEFEAKYTAYEQEG-- 380

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +  R++ A  LW+ ++T   ETG P+I +KD  N  S Q+H+G +  SNLCTEI   
Sbjct: 381 ---RYVRRVDARELWKAIVTAQVETGTPYILYKDTVNRNSNQRHLGTIKGSNLCTEIVEY 437

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           +S +ETAVC L S+NL        F+ + LA T+R   R L+ +ID   + I  A KSN 
Sbjct: 438 ASPDETAVCVLASVNLPKFVEGKVFNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNF 497

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR IG+G+ G+  AL ++ I Y   +++++  +  E I   A++ S +LA+  G Y S+
Sbjct: 498 KHRPIGIGVQGYADALAMMGIAYE--DSMQLNRDIFETIYHAALTESCQLARVHGVYESY 555

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS   +G    D   + ++  D           W  L+K +   G+RNS  +A  PTAT
Sbjct: 556 HGSPTSRGELHFDRYSVHSQKCD-----------WSSLRKDIARYGLRNSLLVAPMPTAT 604

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + + G ++S +P   N+Y +   SG+F + N  LV +L++ +LW++ M   + Y++GSI
Sbjct: 605 TSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNVHLVRDLERLNLWNDDMAQLIMYNNGSI 664

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NI  IP++L++I+ T +EI    LI+ A+ R  +IDQ+QS NLY+ EP+  ++  I+  
Sbjct: 665 QNITIIPEELRRIYKTVWEIPTKTLIDMAADRGAYIDQSQSFNLYVAEPTYSRMTSIHFY 724

Query: 892 AWLMGLKT-TYYLRSRSATS 910
           AW  GLKT  YYLR++SAT+
Sbjct: 725 AWNKGLKTGMYYLRTKSATN 744


>gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
 gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
          Length = 811

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/671 (37%), Positives = 385/671 (57%), Gaps = 41/671 (6%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +K+ERDF   Y G + L   Y L +N   I E  Q  +MRVA+G+      +   A E Y
Sbjct: 128 IKHERDFEMTYFGYKTLERSYLLKLNEDTIVERIQYLWMRVALGIHCYANLQA--AFETY 185

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           +L+S  +F  ++PTLF++GT HPQLSSCFL  + DD + GI+  L+  A+++K +GG+G 
Sbjct: 186 DLMSRGYFTHASPTLFHAGTTHPQLSSCFLVQMSDDSINGIYDTLKRCAVISKAAGGIGL 245

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEE 461
               +R  G  I GT G S G++P L+V + T+  V+QGG KR GA   YLE WH D+ +
Sbjct: 246 CVHKIRARGTFIKGTRGVSNGLVPMLRVFDVTSHYVDQGGGKRPGAFAIYLEPWHADIFD 305

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
            L+L+KN G + +R  ++    W+PDLFMKRV ++  W+L  P     L + +G++FE  
Sbjct: 306 VLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMCPHRCPGLSECHGEKFEEL 365

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y  YE        +  R++ A  LW  +L    ETG P++ +KD  N +S QQ++G +  
Sbjct: 366 YAKYESDG-----RYTRQVRARELWAAILEAQIETGTPYLLYKDAANKKSNQQNLGTIQC 420

Query: 582 SNLCTEITLNSSSEETAVCNLGSINL-------LAHFANNQ-----FDYDKLASTIRTAV 629
           SNLCTEI   ++ EE AVCNL SI L         +F + +     FD+++L    +   
Sbjct: 421 SNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFGSTEGSGAYFDHEQLHKVAKIVT 480

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           + LD VID+N + IE AKKSN +HR +G+G+ G       L +P+AS EA  + +   E 
Sbjct: 481 KNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTFLRLGLPFASEEAKTLNEAIFET 540

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQG-----VFPIDSIGLLAEVRDE--LAMNRTS 742
           I   ++ AS E+A+E+G+Y +F GS   +G     ++ +D +   +  +D+  LA  + S
Sbjct: 541 IYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWGVDDVETPSHRKDQSALAFQKYS 600

Query: 743 R------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    W+ L++ +   G+RNS  +A  PTA+ + I GV++  +P   NLYV+   +
Sbjct: 601 TQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQILGVNECFEPFASNLYVRRVKA 660

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L    LW++++ + L    GS+  IE +PD LK ++ T +E+    +
Sbjct: 661 GEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKIECVPDRLKGLYKTVWEMKMKDV 720

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----S 910
           I+ A+ R K+IDQ+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R A      +
Sbjct: 721 IDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWKKGLKTGIYYLRTRPAVNAIQYT 780

Query: 911 VEKSTLKGVDG 921
           VEK  L  VD 
Sbjct: 781 VEKDALPEVDA 791


>gi|224097022|ref|XP_002189376.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Taeniopygia guttata]
          Length = 847

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/674 (38%), Positives = 380/674 (56%), Gaps = 48/674 (7%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF++ Y G + L   Y L IN    E PQ   MRV++G+   + +    A+
Sbjct: 144 LNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVGIHKADIDA---AI 200

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG
Sbjct: 201 ETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGG 260

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
           +G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D
Sbjct: 261 IGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLD 320

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L D++G+EF
Sbjct: 321 IFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDDVWGEEF 380

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE+YERQ      +V R + A  LW  ++    ETG P++ +KD CN +S QQ++G 
Sbjct: 381 EKLYESYERQG-----RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGT 435

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVID 637
           +  SNLCTEI   +S EE AVCNL SI L  +    + +D+ KLA   +  VR L+ +ID
Sbjct: 436 IKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTPEHSYDFKKLAEVTKVIVRNLNKIID 495

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV----------------- 680
           IN + +   +  N      G       S    L     SPEA+                 
Sbjct: 496 INYYPV--PEDLNRAQFVRGAPHAELSSEETWLPQTPRSPEALPGFWGSGLTGLRVRCSY 553

Query: 681 EIADESMEFISFHAI-SASVELAQERGA-YSSFKGSL----WDQGVFPIDSIGLLAEV-- 732
           E        +    +  A +E   E G  Y  +K S       Q +  I    L  E+  
Sbjct: 554 ERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 613

Query: 733 ---RDELAM----NRTSRLPWD--ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              R+E+      N T    WD   LK+++   G+RNS  ++  PTA+ A I G ++SI+
Sbjct: 614 YTSREEILQYDMWNVTPSDLWDWKALKEKIAKYGVRNSLLISPMPTASTAQILGNNESIE 673

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y +  +SG+F VVN  L+ +L +R LW+E M + +  H+GSI NI  IPDDLK+
Sbjct: 674 PYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNIPEIPDDLKQ 733

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           ++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YY
Sbjct: 734 LYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYY 793

Query: 903 LRSRSATSVEKSTL 916
           LR++ A +  + TL
Sbjct: 794 LRTKPAANPIQFTL 807


>gi|291336892|gb|ADD96421.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 431

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/414 (48%), Positives = 282/414 (68%), Gaps = 6/414 (1%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           +G L   N  ++ +  E AC  L++VS   ++ + +   YD ++  +++ ALI S+R  I
Sbjct: 11  NGRLQELNIDKINLCAERACEDLENVSWSEIVLDAHVQFYDKITTKEIDKALIMSARQKI 70

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           EKEPNY+   +R LL  + +EV      K      H++       F + I+  VK  +L 
Sbjct: 71  EKEPNYSYAASRLLLATIHKEVFGESRDKDVFEEQHKLS------FIKNIKSLVKEEILD 124

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           E ++ FDL  L+  L  +RD  F+YLGLQI+YDRY  H+N  R+E PQ+F+MRVAMGLAL
Sbjct: 125 ERLLSFDLKMLSEALVTDRDLKFKYLGLQIIYDRYLHHVNERRLETPQSFWMRVAMGLAL 184

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E +K ++A+EFYN LS+F   CSTPTLFNSG+ H QLSSC+L T  D + GIF  L + 
Sbjct: 185 NEKDKNEKAIEFYNALSTFSLCCSTPTLFNSGSNHSQLSSCYLNTFDDSIDGIFEGLWQE 244

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A  +KY+GGLG D T  R   +++ GTNGKS G+IP+LK+ NDT +AV+QGGKR GA C+
Sbjct: 245 ARKSKYAGGLGFDCTNFRASNSYVKGTNGKSSGLIPWLKIYNDTLIAVDQGGKRPGAGCS 304

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH+D+E+FL+L+KNTGD+RRR HDMNTANWIPDLF+++V +N  W LFSP +  +L
Sbjct: 305 YLEPWHLDIEDFLELKKNTGDERRRCHDMNTANWIPDLFIRKVQKNEDWYLFSPSDTREL 364

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           H+ YG EF+  Y+ Y + AD G+++ ++ + A  LW+KML +LFETGHPW+T K
Sbjct: 365 HETYGNEFDKIYKKYCKLADSGDLENYKIVKAKDLWKKMLRVLFETGHPWMTLK 418


>gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
 gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
          Length = 760

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/637 (37%), Positives = 371/637 (58%), Gaps = 20/637 (3%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFY 343
           L Y  D+ ++Y G + L + Y   I G   E  Q  +MRVA+ +   +T+     V E Y
Sbjct: 127 LNYNLDYDYKYFGFKTLENGYLKTIEGKVAERIQHMYMRVALTIHGNDTDDCIENVFETY 186

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGN 402
           NL++   +  ++PTLF SG+ + QL+SCFL  + +D + GI+  L++ A+++K+ GG+G 
Sbjct: 187 NLMAHKMYTHASPTLFASGSCYAQLASCFLLNIKEDSIVGIYETLRDCALISKFGGGIGL 246

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
               VR  G+ I  TNG + G+   L+V N+    V+QGGKRKGA+  Y+E WH D+ +F
Sbjct: 247 SVHNVRARGSFIESTNGTANGLEAMLRVYNNAVRHVDQGGKRKGAMAIYVEPWHADIYDF 306

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L+L++N G + R+  D+  A W+PDLFMKRV  +  W+L  P E   L  ++G EFE  Y
Sbjct: 307 LELKRNMGAEDRKARDLLYALWVPDLFMKRVEADGMWSLMCPRESPLLDTVHGSEFEQLY 366

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE+       K  R+I A  L+R ++    ETG P++ +KD CN++S Q+H+G + +S
Sbjct: 367 VAYEKCG-----KFVRQIKARDLFRTIVETQVETGTPYMMYKDACNMKSNQKHLGTIKNS 421

Query: 583 NLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           NLC EI   S   E+AVCNL SI  N        +++++ L    +  V+ L+ +IDIN 
Sbjct: 422 NLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGEYNFEMLKYVTKIVVKNLNKIIDINY 481

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + +  A+KSN  HR IG+G+ G      +L +PY S +A  +  +  E I F A+ AS E
Sbjct: 482 YPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYESDQAKVLNTKIAETIYFGALEASCE 541

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+  G + S+  S       P  S+G+L    D      TS   W +LKK +K  G+RN
Sbjct: 542 LAKAYGVHDSYFSS-------PA-SLGILQ--YDLWNHTPTSMWDWTQLKKDIKQHGLRN 591

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S C+A  PTAT A I G ++S +P   N+YV+  ++GDF V+N +L ++L + +L++E M
Sbjct: 592 SLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVLAGDFQVINKYLTDDLIKLNLYNEQM 651

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +  ++GS+ NIE IP  +++++ T +E+    LI  A+ R  +IDQ+QS N++L +P
Sbjct: 652 RNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKNLIGMAADRGPFIDQSQSFNIFLSQP 711

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +   L  I+   W  GLKT  YYLR++ A    K T+
Sbjct: 712 TYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKFTV 748


>gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 774

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 270/811 (33%), Positives = 434/811 (53%), Gaps = 58/811 (7%)

Query: 155 ISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE--TALIFSSRTLI 210
           ISF+  RL+  + +   GL  + V   +V+ +    + + L   DL   T+ I +S  L 
Sbjct: 8   ISFDEARLKRSLLKLSFGLNLKFVDIALVVEKVSLAIIENLHLQDLLNLTSEILAS--LS 65

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            +  +Y+ + AR L   LR+ +  + +   ++   H            ++++G+      
Sbjct: 66  TRHYDYSNLAARLLSNHLRKRLGDSFFANCERLAEHG-----------FVDKGLLTIARS 114

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
            S        L   +K ERDF F+Y G   L   Y L  +   +E PQ  FMRVA+G+  
Sbjct: 115 NSEQ------LDGSIKPERDFDFDYFGYMTLQSIYLLKKDDLILETPQFLFMRVALGI-- 166

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQE 389
              E    A++ Y+L+S  +F+ ++PTLF++GT  P LSSCFL  + D D+  ++ +L +
Sbjct: 167 -HGEDLSSAIQTYDLMSQGYFIHASPTLFHAGTPTPYLSSCFLMGLQDADVNSVYQSLHK 225

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447
            AM++  +GG+G        +  H I   +  ++G++P +KV N+TA  V QG  KR  A
Sbjct: 226 IAMISNAAGGIG--------INVHDIPAEDACNRGIVPLIKVLNETARYVQQGSNKRPSA 277

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLE WH +V + L+LRKN G +  R  D+  A WIPDLFM++V +N  W LF+P   
Sbjct: 278 FAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFNPLHA 337

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L+D+YG++F + Y  YE++         RKI A  LW  ++    ETG P++ +KD C
Sbjct: 338 KGLNDVYGEQFNLLYAEYEKKG-----MYVRKIPAQQLWNAIVDAQIETGTPFMLYKDSC 392

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N +S Q ++G +  SNLC EI   SS ++ AVCNL SI L  +  + +FD++ L +++R 
Sbjct: 393 NRKSNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYVVDGKFDFESLKNSVRI 452

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
               L+ VIDI+ + + +A  SN   R + +G+ G      LL IPY S EA  +  +  
Sbjct: 453 VTENLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQIF 512

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I + A+  S+ +A++ G Y SF+GS   +G+  +D    L  V++E        L W 
Sbjct: 513 ETIYYSALETSMNIAKKDGPYKSFQGSPASKGLLQMD----LWNVKEE-----DLTLDWK 563

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  +   G+RNS  +   PTA+ + I G  +S +P   N Y +   SG++ VVN +L+
Sbjct: 564 SLRSDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKYLI 623

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           ++L    LW +++  ++  +DGSI  I+ IP ++K ++ T +EI     I  A+ R ++I
Sbjct: 624 DDLINLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGRFI 683

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL----KGVDGK 922
           DQ+QS+NLYL +P+  KL  ++  AW  GLKT  YYLR+++A+S  K ++    +  DG 
Sbjct: 684 DQSQSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRDGT 743

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            N  P       + +L    SC  +  CE C
Sbjct: 744 YN-TPTKRQAVQSEALETTPSCQLNN-CESC 772


>gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
 gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
          Length = 840

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/775 (35%), Positives = 409/775 (52%), Gaps = 67/775 (8%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S  IV  +    ++ G++  +L+     ++ ++  K P+YA + AR  +  L +   TTV
Sbjct: 52  SQVIVAQKVCMGVFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHK---TTV 108

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAF 293
                K+    M+ +Y     R    G  + LL + + +  +     L  +L Y+RDF +
Sbjct: 109 -----KSFSETMKVMYEHVNKR---NGKWSPLLADDVYEIIMANAEKLDAELVYDRDFDY 160

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +Y G + L   Y L I+G  +E PQ   MRV++G+   + EK   A++ Y++LS      
Sbjct: 161 DYFGFKTLERSYLLRIDGKVVERPQHLLMRVSIGIHKTDIEK---AIDTYHMLSERWMTH 217

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW-TPVRGLG 411
           ++PTLFN+GT  PQLSSCFL  + +D + GI+  L+E A ++K +GG+   +  P     
Sbjct: 218 ASPTLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKECACISKSAGGIALTFEAPTERRT 277

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A           V    ++A  T V V+    R      YLE WH D+ ++LDLRKN G 
Sbjct: 278 ASFRCC------VCSTTRLATWTKVVVSARNVR-----IYLEPWHADIFDWLDLRKNHGK 326

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+    W  DLFMKRV  N  WTL  P+E   L D +G+EFE  YE YE     
Sbjct: 327 EEARARDLFYGLWTNDLFMKRVEANGEWTLMCPNECPGLSDCWGEEFETLYEKYE----- 381

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E K  + I A  LW  +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   
Sbjct: 382 AEGKGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEY 441

Query: 592 SSSEETAVCNLGSINLLAHFANNQ-----------------------FDYDKLASTIRTA 628
           +S +ETAVCNL SI L      N                        FD+ KL    R  
Sbjct: 442 TSPDETAVCNLASIALPRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKV 501

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+ +ID+N + +E AK SN  HR IGLG+ G      LL +P+ SPEA ++  E  E
Sbjct: 502 TRNLNRIIDVNYYPVEAAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEAQKLNAEIFE 561

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I F A++ S  LA   G YS+++GS   +GV   D  GL         M   +R  W  
Sbjct: 562 TIYFAALTESNALAVAEGPYSTYEGSPVSKGVLQPDMWGL-------TEMPGGNRHDWAG 614

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L++
Sbjct: 615 LRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLS 674

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L +  LWD  + ++L  ++GS+ +++ IPD+LK I+ T +EI    L++ A+ R  +ID
Sbjct: 675 DLTELGLWDPELKNELISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVDMAADRGAFID 733

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
           Q+QS N+++ +P+  KL  ++  AW  GLKT  YYLRSR+A    K T+     K
Sbjct: 734 QSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDATKTK 788


>gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 778

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/710 (34%), Positives = 393/710 (55%), Gaps = 43/710 (6%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T+I   P+Y K+ A  L++ L      T   K                   YI++  +  
Sbjct: 56  TMITIHPSYNKLAAIILIKHLHENTFNTFSDKMM-----------------YIQQ--EKN 96

Query: 268 LLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  + +M+    ++    + +KYERD+ F+Y  L  L   Y + +N + IE PQ  +MRV
Sbjct: 97  IFDDHIMELIINNMNVYNSIVKYERDYNFDYFALISLQKSYQIQVNNTVIERPQDIYMRV 156

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+ L   +    ++    Y+LLS  ++  +TPTL+NS  +  QL+SCFL  +  D + GI
Sbjct: 157 AIELHGDDFNNVQKT---YDLLSQQYYTHATPTLYNSCFKKNQLASCFLLGMKSDTIAGI 213

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  ++E A+ +K SGG+G   + +R   + +  T G S+G+IP +K+ ND+   +NQGG 
Sbjct: 214 FDTIKEAAIYSKLSGGVGLHISNLRCDKSQLVTTGGYSKGIIPIVKLINDSMKYINQGGA 273

Query: 444 RKGAVCA-YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+ A CA YLE WH D+ +FLDLRKNTG +  R  D  TA WI DLFM+RV +N  W+LF
Sbjct: 274 RRCATCAFYLEPWHKDILKFLDLRKNTGIEEERARDSFTALWINDLFMERVEKNEMWSLF 333

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+    L D++G +F   Y  YE   +R        I A  LW++++    ETG P++ 
Sbjct: 334 DPNIAKGLQDVWGDQFNKLYAYYEETIER------TTIPAQKLWKEIICSQIETGTPYMC 387

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQF 616
           +KD CN  S Q ++G + SSNLC EI   S S+ TAVCNL SI L  +       +N  F
Sbjct: 388 YKDTCNRYSNQNNIGTIKSSNLCAEIIQYSDSDITAVCNLASICLPKYVKINSTTSNYYF 447

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ +L + ++     ++ +ID +    E++KK N   R IG+G+ G      L+   + S
Sbjct: 448 DFQELYTVVKIVTYNMNKMIDKSAFPTEESKKGNSLFRPIGIGVQGLADVFFLMGYSFES 507

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++     E + F A+ AS ELAQ+ G YS ++GS++ QG+F  +      E R  +
Sbjct: 508 KEARDLNKMIFETLYFGALEASCELAQKHGPYSYYQGSMYSQGIFHFEK---FCEGRINV 564

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    W+EL+ ++KT G+RNS  +A+ PTA+ + ICG S+ I+P   N++ +   +
Sbjct: 565 NEILSGMWNWEELRIKMKTYGVRNSLTLALMPTASTSQICGNSECIEPIQSNIFTRRTFA 624

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L +  LW+  +   +  ++GSI  I  IP  +K ++ T +E+    +
Sbjct: 625 GEFQIVNKYLMKDLIKLGLWNNEIKQLIIEYEGSIQKIPIIPQHVKDLYKTVWELKMKSV 684

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           ++ A  RQ ++DQ+QSLNL++ EP+   L  ++   W   LKT  YYLR+
Sbjct: 685 LDMAIDRQAFVDQSQSLNLFVKEPTYGILSSMHFYGWKNKLKTGMYYLRT 734


>gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella
           virus MT325]
          Length = 765

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/609 (39%), Positives = 350/609 (57%), Gaps = 21/609 (3%)

Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           R +L   GS+I E PQ  ++RVA+ L   + E+ K   E Y+ LS   F  ++PTLFN+G
Sbjct: 162 RLYLTKVGSKIIERPQHTYLRVAIALWGSDIERVK---ETYDALSRRKFTHASPTLFNAG 218

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +   L+SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S 
Sbjct: 219 FKKANLASCFLVHCNDSLTDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESD 278

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++P LKV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A
Sbjct: 279 GIVPMLKVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYA 338

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+ DLFMKRV  +A W+L  P E   L D+YGKE+E  Y  YE      E K  R + A
Sbjct: 339 MWVNDLFMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKA 393

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +
Sbjct: 394 RDVWNTMVTTQMETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVI 453

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSI L  +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G
Sbjct: 454 GSIVLKNYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQG 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+  
Sbjct: 514 LQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQ 573

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               G+  +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ 
Sbjct: 574 YHLWGVTPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAA 622

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  ++G+F VVNS+LV EL  R  W EAM + +  + GSI  +  I  D+K
Sbjct: 623 EPITSNIYSRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVK 682

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            ++ T++EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  Y
Sbjct: 683 AVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVY 742

Query: 902 YLRSRSATS 910
           Y RS+ A +
Sbjct: 743 YTRSKPAAN 751


>gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 765

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/609 (38%), Positives = 350/609 (57%), Gaps = 21/609 (3%)

Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           R +L   GS+I E PQ  ++RVA+ L   + E+ K   E Y+ LS   F  ++PTLFN+G
Sbjct: 162 RLYLTKVGSKIIERPQHTYLRVAIALWGSDIERVK---ETYDALSRRKFTHASPTLFNAG 218

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +   L+SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S 
Sbjct: 219 FKKANLASCFLVHCNDSLSDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESD 278

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++P LKV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A
Sbjct: 279 GIVPMLKVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYA 338

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+ DLFMKRV  +A W+L  P E   L D+YGKE+E  Y  YE +      K  R + A
Sbjct: 339 MWVNDLFMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYESEG-----KAKRVVKA 393

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +
Sbjct: 394 RDVWNTMVTTQIETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVI 453

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSI L  +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G
Sbjct: 454 GSIVLKNYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQG 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+  
Sbjct: 514 LQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQ 573

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               G+  +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ 
Sbjct: 574 YHLWGVTPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAA 622

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  ++G+F VVNS+LV EL  R  W E M + +  + GSI  +  I  D+K
Sbjct: 623 EPITSNIYSRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVK 682

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            ++ T++EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  Y
Sbjct: 683 AVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVY 742

Query: 902 YLRSRSATS 910
           Y+RS+ A +
Sbjct: 743 YVRSKPAAN 751


>gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 621

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 352/575 (61%), Gaps = 20/575 (3%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404
           +S  +F  +TPTLFNSGT +PQ+SSCFL  + DD + GI+  L+  A+++K +GG+G   
Sbjct: 1   MSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSV 60

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
           + +R   ++I GTNG S G++P LKV NDTA  V+QGG KRKG+   YLE WH D+  FL
Sbjct: 61  SKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFL 120

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            LRKN G + +R  D+    WIPDLFM+RV  ++ WTL  P+E   L D YG+EF   Y 
Sbjct: 121 QLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYT 180

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +YE + + G +     + A  LW++++     TG P++ +KD CN +S Q+++G + SSN
Sbjct: 181 DYESK-NMGRVT----MKARQLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSN 235

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642
           LCTEI   +S +E AVCNL SINL      ++ F++DKL    +     L+ VID+N + 
Sbjct: 236 LCTEIIQYTSPDEVAVCNLASINLQKLIKEDKTFNFDKLLEITKIITTNLNIVIDLNFYP 295

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++A+ SN  +R IG+G+ GF  AL  + IP+ S +A+E+  +  E I + A   S+ELA
Sbjct: 296 VQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELA 355

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           Q+ G Y +F GS   QG+   D  G+  ++ D           W+ LK+ +   GMRNS 
Sbjct: 356 QQLGPYETFAGSPASQGILQFDMWGVSPKLYD-----------WNTLKQNIVKYGMRNSL 404

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ + I   ++S +P   N+Y +  ++G+F  +N  LV++L + +LW   + +
Sbjct: 405 LIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKN 464

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            L  ++GS+ NI+ IP ++K+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+ 
Sbjct: 465 KLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTM 524

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            K+  ++  AW  GLKT  YYLR+R A    K T+
Sbjct: 525 SKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTV 559


>gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot
           syndrome virus]
          Length = 848

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/752 (34%), Positives = 408/752 (54%), Gaps = 43/752 (5%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +++  L   ++T I   P++ K+  RF+   + +   T  +      T      ++
Sbjct: 65  ISFQEMDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKN--TKEWNSFSATTQKLRHAIH 122

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           P         G  A +++++  +  +     L   + Y+ D+ F   GL+ L   Y + I
Sbjct: 123 PG-------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKI 175

Query: 310 NGSR-------IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                      +E PQ   MRVA+G+   +    K  +E Y+L+S  +F  ++PTLFN G
Sbjct: 176 GSPTDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCG 232

Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL  + DD + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G  
Sbjct: 233 TVTPQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTH 292

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++ FL++ N +   V+QGG KR+GA   Y+  WH+DV++F+D RKN G++  RT D+ 
Sbjct: 293 PGLMAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLL 352

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A W+ DLFM+RV     W+L  P E   L D++G+EF+  YE YE +    E+     +
Sbjct: 353 PAIWVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----V 407

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A AL+ ++ +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVC
Sbjct: 408 KARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVC 467

Query: 601 NLGSI---NLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           NL SI     + +F         DY ++   ++   R LD VID+N + ++K + SN   
Sbjct: 468 NLASIAVNKFVKYFPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKT 527

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712
           R +GLG+ G       L IP+ S EA  I     E I + A+ AS E+A+E+G  Y  F+
Sbjct: 528 RPMGLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFE 587

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS   +G+F  D      + RD +  N      W++L++ +   G+ NS  +A  PTA+ 
Sbjct: 588 GSPLSKGIFQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTAST 646

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G S+S +P   N+Y ++ +SG F VVN +++ EL +   W+      +    GSI 
Sbjct: 647 AQILGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQ 706

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            +  IP   K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+  +   A
Sbjct: 707 TLPNIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYA 766

Query: 893 WLMGLKTTYYLRSRSAT-----SVEKSTLKGV 919
           W  G+KT YYLR++ A      +V+K+ L+ V
Sbjct: 767 WEKGIKTLYYLRTKGAARAVQFTVDKNVLQEV 798


>gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus]
 gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot
           syndrome virus]
 gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1)
           [shrimp white spot syndrome virus]
 gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus]
 gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus]
          Length = 848

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 259/758 (34%), Positives = 409/758 (53%), Gaps = 55/758 (7%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +++  L   ++T I   P++ K+  RF+   + +   T  +      T      ++
Sbjct: 65  ISFQEMDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKN--TKEWNSFSATTQKLRHAIH 122

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           P         G  A +++++  +  +     L   + Y+ D+ F   GL+ L   Y + I
Sbjct: 123 PG-------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKI 175

Query: 310 NGSR-------IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                      +E PQ   MRVA+G+   +    K  +E Y+L+S  +F  ++PTLFN G
Sbjct: 176 GSPTDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCG 232

Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL  + DD + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G  
Sbjct: 233 TVTPQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTH 292

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++ FL++ N +   V+QGG KR+GA   Y+  WH+DV++F+D RKN G++  RT D+ 
Sbjct: 293 PGLMAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLF 352

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A W+ DLFM+RV     W+L  P E   L D++G+EF+  YE YE +    E+     +
Sbjct: 353 PAIWVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----V 407

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A AL+ ++ +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVC
Sbjct: 408 KARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVC 467

Query: 601 NLGSINLLAHFANNQF-------------DYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           NL SI      A N+F             DY ++   ++   R LD VID+N + ++K +
Sbjct: 468 NLASI------AVNKFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTR 521

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG- 706
            SN   R +GLG+ G       L IP+ S EA  I     E I + A+ AS E+A+E+G 
Sbjct: 522 ISNMKTRPMGLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGE 581

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y  F+GS   +G+F  D      + RD +  N      W++L++ +   G+ NS  +A 
Sbjct: 582 TYELFEGSPLSKGIFQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAP 640

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G S+S +P   N+Y ++ +SG F VVN +++ EL +   W+      +  
Sbjct: 641 MPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMA 700

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
             GSI  +  IP   K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+ 
Sbjct: 701 SGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVR 760

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT-----SVEKSTLKGV 919
            +   AW  G+KT YYLR++ A      +V+K+ L+ V
Sbjct: 761 SMTMYAWEKGIKTLYYLRTKGAARAVQFTVDKNVLQEV 798


>gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides
           posadasii str. Silveira]
          Length = 643

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/673 (36%), Positives = 373/673 (55%), Gaps = 40/673 (5%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR  +  L     
Sbjct: 2   EHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNL----- 56

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY-----LANDLKYE 288
              +K+ +K     +  LY      YI           S   +++V      L + + Y+
Sbjct: 57  ---HKQTKKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYD 108

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  ++ EK   A+E YNL+S 
Sbjct: 109 RDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AIETYNLMSQ 165

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A+++K +GG+G +   +
Sbjct: 166 KFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGGIGLNVHRI 225

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  G++I GTNG S G+IP L+V N+TA  V+QGG KR GA   YLE WH D+ EFLDLR
Sbjct: 226 RATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHSDIFEFLDLR 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG EFE  YE YE
Sbjct: 286 KNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGDEFEALYEQYE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++  RG     + I A  LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCT
Sbjct: 346 KEG-RGR----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIRSSNLCT 400

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   +S +E AVCNL S+ L  +      ++D+ KL    +  VR L+ +ID N + + 
Sbjct: 401 EIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNKIIDGNHYPVP 460

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A++AS ++A+ 
Sbjct: 461 EARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKV 520

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +++GS   QGV   D   +            T    WD LK+ +   G+RNS  +
Sbjct: 521 DGPYETYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIAKHGVRNSLLV 570

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW + M + +
Sbjct: 571 APMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRI 630

Query: 825 KYHDGSIGNIERI 837
               GSI +I  I
Sbjct: 631 IAEGGSIQSIPNI 643


>gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit
           [Saccharomyces cerevisiae]
          Length = 756

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/742 (34%), Positives = 401/742 (54%), Gaps = 48/742 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++  T  + K  +  H  +
Sbjct: 47  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWI 105

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                         G  A ++ + + +   +  YL + + Y+RDF + Y G + L   Y 
Sbjct: 106 NP----------ATGKHAPMISDEIYNIVMETRYLNSAIVYDRDFQYTYFGFKTLERSYL 155

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           L +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT  P
Sbjct: 156 LRLNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFNAGTPLP 212

Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           Q+SSCFL  + DD + GI+  L+E AM++K +G L +    +R  G++I GTNG S G+I
Sbjct: 213 QMSSCFLIAMKDDSIEGIYDTLKECAMISKTAGVLSHI-NNIRSTGSYIAGTNGTSNGLI 271

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETW----HIDVEEFLDLRKNTGDDRRRTHDMNT 481
           P ++V N+TA  V +   R   +  +  +W     I   +F D+RK  G +  R  D+  
Sbjct: 272 PMIRVFNNTARYVTRVVTRDLVLSPF--SWSHGMQISSTKF-DIRKTHGKEEIRARDLFP 328

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A WIPDLFMKRV ++  WTLFSP     L D++G EFE  Y  YER+  RG     + I 
Sbjct: 329 ALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELYTRYEREG-RG-----KTIK 382

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW  +L    ETG P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCN
Sbjct: 383 AQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCN 442

Query: 602 LGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           L SI L A    ++      +++++L    +     L+ VID N + + +A+ SN  HR 
Sbjct: 443 LASIALPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRP 502

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           I LG+ G      +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS 
Sbjct: 503 IALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSP 562

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+   D             M       W+ L+K +   G+RNS  MA  PTA+ + I
Sbjct: 563 ASKGILQFDMWNA-----KPFGM-----WDWETLRKDIVKHGLRNSLTMAPMPTASTSQI 612

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G ++  +P   N+Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  + 
Sbjct: 613 LGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLP 672

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            +P +LK+++ T +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  
Sbjct: 673 NVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKK 732

Query: 896 GLKT-TYYLRSRSATSVEKSTL 916
           GLKT  YYLR+++A++  + T+
Sbjct: 733 GLKTGMYYLRTQAASAAIQFTI 754


>gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
 gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
          Length = 800

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/790 (32%), Positives = 419/790 (53%), Gaps = 50/790 (6%)

Query: 173 LQDVSSK-IVLSETYKNMYDGLSES-DLETALIFSSRT---LIEKEPNYAKVTARFLLEK 227
           + D+ S+ I + E +  +  GL +   +E  + F++ T   +  K  +Y + +A+ L+E 
Sbjct: 50  ISDLDSRFIAIDEYFLKIESGLCDDITVEEFISFAAETADSMTTKHYDYGRFSAKILMEY 109

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
           L+   L + + K      ++    Y E F   + +  K              +L   + Y
Sbjct: 110 LKENTLDSFFAKVDYI--YKNGDFYSEKFYNIVLDNKK--------------FLDELVDY 153

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            +D ++ Y  +  L   Y L ++G  IE PQ   +RVA+ L     E  K   E Y LLS
Sbjct: 154 SKDDSWTYFAILTLKRAYLLTLDGQTIERPQDMLLRVAVQLHGDNLENVK---ETYELLS 210

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +   +PT+FNSG++  QL+SCFL T + + + G+F  ++    ++K  GG+  D   
Sbjct: 211 NNMYTHGSPTIFNSGSKKSQLASCFLLTPIEETVEGLFETVKRCVQISKSGGGVALDLHD 270

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDL 465
           +   G  I  T G S+G+IP+++V N +   + Q G R+ G    YLE WH D+ +FLDL
Sbjct: 271 MAAKGTSIRKTGGISKGIIPYIQVLNWSLKYIGQAGSRRSGCPAIYLEPWHKDIFDFLDL 330

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK+ G D  R  D+ T  WI DLFMKRV  N  W+LF P  V  L + YGKEFE  Y  Y
Sbjct: 331 RKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFCPKSVPGLSNAYGKEFEDMYLEY 390

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E++ D         + A  +W+ ++    ETG P++ +KD  N  S Q+++G +  SNLC
Sbjct: 391 EKKVD------CVVVPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIGTIRCSNLC 444

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           TEI   +S +E AVCNL SI L     N +FD++   S ++   +  + VID N + +++
Sbjct: 445 TEIVQYTSPDEVAVCNLASICLPKFVINGEFDFNLFKSVVKIVTKNANIVIDCNFYPLKE 504

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+KSN  HR IGLG+ G      +L +PY S  A ++  E  E + F A+ +S E A++ 
Sbjct: 505 AEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALESSCEEAEKY 564

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCM 764
           G Y S+ GS   +G+F             E+A + T+ R  W+EL+K++   G+RNS  +
Sbjct: 565 GPYESYNGSPISKGIF-----------HWEMANSSTTGRWNWEELRKKILKYGVRNSLLI 613

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA  + I   +++ +P   N+Y +    G+F +VN +L+N+L + ++W   + + +
Sbjct: 614 APMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMWSPEIKNYI 673

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              +GSI NI  IP+++K+++ T +EI    +I+ A+ RQ ++DQ QSLNL++ +P+   
Sbjct: 674 VEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLFVAKPTYPI 733

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           L  ++   W  GLKT  YYLR+R  TS  K T+      L+ +   + N +T+     + 
Sbjct: 734 LSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTV-----DLDMLKKVEKNEATNEELKENE 788

Query: 944 CTSDTECEVC 953
                 CE C
Sbjct: 789 INKSDICESC 798


>gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
 gi|81990393|sp|Q7T6Y8|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
          Length = 881

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/786 (32%), Positives = 419/786 (53%), Gaps = 43/786 (5%)

Query: 142 APKLKIMMD-DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE----S 196
            PK  I +D +G++    S+ +   VE+    ++   + + + +  KN++  L       
Sbjct: 65  VPKETIYLDHNGSIQVITSEIIRTYVEKIFEKME--VTHLDIDKMTKNIFPKLKSINTIK 122

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D++  +I ++  ++    +Y K+    L+  L         +  +K  +++         
Sbjct: 123 DIDNQIISTASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKS-------- 174

Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
               E    A ++ E++ +F    +  +   ++Y+RD+     G + L   Y   IN   
Sbjct: 175 ----ESNKNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKI 230

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ  FMRVA+ L  ++ + + R  E Y  LS  +F  +TPTLFN+GT H QLSSCFL
Sbjct: 231 VERPQHLFMRVAITLHYRKNDLD-RIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFL 289

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D L  I    +E A+++K++GG+G   T +R  GA+I  T G++ G +  L + ND
Sbjct: 290 LGIGDSLEEISECWKECALISKHAGGIGIHMTNIRVEGAYIASTQGEAGG-LRVLTIFND 348

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
            +   NQGGKR G+   ++E WH D+  FLDL+KNTG +  R  D+     I D+FM+RV
Sbjct: 349 ISRYANQGGKRPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERV 408

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  W+L  P +  +L + YG EF   Y  YE +         ++I A+ LW K++   
Sbjct: 409 YKDDVWSLMCPSQCPNLLNKYGDEFTKEYLKYESEG-----IYLKQIRAIDLWFKIMESQ 463

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            ETG P++ FKD  N +S Q ++GVV+ SNLC EI   S     +VCNL SI  L  F  
Sbjct: 464 IETGVPYVMFKDAINDKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSI-CLPRFVK 522

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  F+Y KL    R   R L+N+IDIN + ++K + +N   R IG+G+ G      
Sbjct: 523 IIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFA 582

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +   P+ S  A ++  +  E I + A++ S +LA+E G Y +++GS   QG F  D   L
Sbjct: 583 MFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFD---L 639

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
               + +L+        W+ L++ +   G+RNS      PTA+ + I G ++ I+P  +N
Sbjct: 640 WNFDKSQLS----GMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTEN 695

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +S M+G++ V+N  L+ +L +  +W+  M+  +KY+ GS+ NI  IPD++K I+ T 
Sbjct: 696 IYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTV 755

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +IE A+ R  ++DQ QS+NLY+D+PS  +L+     AW  GLKT  YYLRS+ 
Sbjct: 756 WEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKP 815

Query: 908 ATSVEK 913
           A+S  +
Sbjct: 816 ASSANQ 821


>gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 769

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/637 (35%), Positives = 363/637 (56%), Gaps = 30/637 (4%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+ F+Y GL  L+  Y   IN S +E PQ  +M+VA+ L     +  K     Y LLS+F
Sbjct: 126 DYLFDYFGLITLFKTYLNKINNSIVERPQDIYMKVAIQLHRSNFDDVKTT---YELLSNF 182

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           ++   TPTL+NS  + PQ++SCFL  + DD + GIF  +++ A + K++GG+G   T +R
Sbjct: 183 YYTHGTPTLYNSCLKKPQMASCFLLAMKDDSVEGIFETIKDCASIRKFNGGIGMYLTNIR 242

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWHIDVEEFLDLRK 467
              + I+ T G+++G+IP +++ ++T    N+   ++   CA YLE WH D+ +FL+LRK
Sbjct: 243 PNKSKINSTGGEAKGIIPVIRLISETIKYFNKNETKRSTSCAFYLEPWHPDIFDFLNLRK 302

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG +  R  D     +I D+FM+RV  N  W+LF P   + L + +G EF   YE YE+
Sbjct: 303 NTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFDPSIATGLINAWGDEFNKLYEYYEK 362

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              +        I A  LW++++    ETG P++ +KD CN  S Q ++G + SSNLC E
Sbjct: 363 TIPK------ITIPAQKLWKEIICAQIETGTPYLVYKDSCNRNSNQNNLGTIKSSNLCAE 416

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   S +  T VCNL SI L     N NQFD+ +L   ++     L+ +IDI+ +  ++A
Sbjct: 417 IIEYSDANITGVCNLASICLPKFINNANQFDFKQLYQVMKKVTINLNKLIDISFYPTKEA 476

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K SN   R IG+G+ G   AL  + IP+ S +A E+     E + +  +  S+ELA+  G
Sbjct: 477 KYSNEATRPIGIGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVMETSMELAKTYG 536

Query: 707 AYSSFKGSLWDQGVFPID------SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
            Y     S++ +G+F  +      +I +L+ + D           W++L+++++  G+RN
Sbjct: 537 PYPLITNSMYSKGIFHFEKYLKNKNIDILSGLWD-----------WEDLREKIRLYGVRN 585

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  ++I PTAT A ICG S+ ++P   N+Y +    G+F +VN +L+N+L +  LW   M
Sbjct: 586 SLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQIVNKYLMNDLIKLGLWSNEM 645

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              +  ++GSI NI  IP ++K ++ T +EI    +++ A  RQ ++DQ+QSLNL++ +P
Sbjct: 646 KQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMAHERQAFVDQSQSLNLFISQP 705

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +   L  ++   W +GLKT  YYLR+    S  K T+
Sbjct: 706 TYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTI 742


>gi|195953681|ref|YP_002121971.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933293|gb|ACG57993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 1005

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 351/617 (56%), Gaps = 44/617 (7%)

Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           I E     L +++   ++ +   N++DG+  + +   ++ S  T    +P Y  +    L
Sbjct: 43  IEEWTMEDLNEINIDEIMEDIEINIFDGIETAAIFQHILHSLLTRAIDDPIYDAMARNVL 102

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-DLVYLAN 283
           L+++ ++    +Y  P+KA        Y E F  YI+  V+  LL E +  + DL  LA 
Sbjct: 103 LQRIYKQAFGGMYS-PKKA--------YKELFIDYIDNAVELGLLDEKLASYYDLEMLAL 153

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKR--- 338
           +L  +RD   ++ GL  L DRY +     G+ +E PQ F+MRVAMG+AL E   E R   
Sbjct: 154 ELVPKRDQLLKFNGLYNLMDRYLIKDLDTGNILEAPQWFWMRVAMGVALVEKTPEDRNHW 213

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A+EFY+++SS  F+ STPTLFNSGTR PQLSSCF+    DDL  IF  +++  ML K++G
Sbjct: 214 AIEFYHMMSSMEFIPSTPTLFNSGTRFPQLSSCFVVDEEDDLSKIFETVKQVGMLNKHAG 273

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   T +R   + I    GKS G+IPFLK+ ++T  AV+QGG+R+G+  A LE WH+D
Sbjct: 274 GVGLPATKLRAKDSIIRSIQGKSSGIIPFLKIIDETITAVSQGGRRRGSALASLEPWHLD 333

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V +F+  ++  GDD +R  ++  A ++ D FM+RV +N  W LF P +   L   YGK+F
Sbjct: 334 VFDFVRTKRKWGDDSQRFKNLKIALFLNDEFMRRVEENGDWYLFDPADCPKLVSTYGKKF 393

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              Y    R+A  G+I+  +KI AV L+++ +    +TG PW TFKDP NIR P +H G 
Sbjct: 394 SREYSKCIRKALSGKIR-HKKIKAVELFKEAIENTIQTGEPWYTFKDPINIRHPNKHTGT 452

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI----NLLAHF----------------------A 612
           + ++NLCTE  L S+ +    CNLGS+     LL HF                      +
Sbjct: 453 ILTTNLCTEQLLVSTYDSIESCNLGSLVLPRALLTHFRVNEHAQPLNSSENGSKHTKFLS 512

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           NN FD++K  + IR A+R LDNVID N + +E  +K     R IGLG MG+Q  +  L +
Sbjct: 513 NNTFDWEKFKAVIRKAIRFLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKL 572

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P  S EA+++ D+  E +S+ AI  SVELA+ERG Y +F GS W +G+ PID++  L   
Sbjct: 573 PVDSKEALKLLDKIGETMSYVAIETSVELAKERGTYPNFDGSDWSKGILPIDTLEHL--F 630

Query: 733 RDELAMNRTSRLPWDEL 749
           R+    N     P++++
Sbjct: 631 RERSLTNDKYTTPYNDM 647



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+EL+++VK  G+RN+    +APTATI+ I G SQS +P Y  +Y ++N++G F  VN  
Sbjct: 746 WEELREKVKQ-GIRNACQTTLAPTATISIIAGTSQSFEPYYALVYSRTNIAGRFLEVNEN 804

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            + +LK+  LWD  +  D+    GSI +I+ IP ++K I+ TA+EID    I+ A+  QK
Sbjct: 805 FIRDLKKLGLWDR-LREDVLLQQGSIQDIKEIPQEIKDIYKTAYEIDTEVYIKQAAVLQK 863

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           WID + S NLY +    +K+  IY +AW  GLK TYY
Sbjct: 864 WIDSSISRNLYFNTRDPQKIMEIYLKAWKYGLKATYY 900


>gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
 gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
          Length = 904

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/641 (36%), Positives = 363/641 (56%), Gaps = 27/641 (4%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L  ++K+ RD+ ++Y G + L + Y L +N    E PQ   MRVA+ +     +    A+
Sbjct: 259 LNREIKHNRDYDYKYFGFKTLTNGYLLKVNDVIAERPQHMLMRVALAI---HGDDVMSAI 315

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E Y L+S   F  ++PTLF +GT  PQ+ SCFL  + +D + GI+  L E+A+++   GG
Sbjct: 316 ETYQLMSLGTFTHASPTLFAAGTCRPQMCSCFLQCIKEDSIDGIYKTLHESALISNLGGG 375

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           LG     V+ + A  +GT  KS G++  L+V N+    V+QGGKRKGA+ AY+E WH ++
Sbjct: 376 LG---LSVQSVSAQYNGTT-KSGGLVSMLRVFNNMVRHVDQGGKRKGALAAYVEPWHPEI 431

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            + L+LR+N G +  +  D+    WIPDLFM+RV +N  W+LF P +   L D YG  FE
Sbjct: 432 YDVLNLRRNMGSEDAKARDLMLGLWIPDLFMERVKENKEWSLFCPKKYPGLLDEYGSSFE 491

Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I YE YE+       K++ R++ A  L+R ++    ETG P++ +KDPCN  S Q+++G+
Sbjct: 492 ILYEKYEKN------KLYERQVKARDLFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGI 545

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           +  SNLC EI      +ETAVCNL SI  N   +     FDY  L    +  VR L+ +I
Sbjct: 546 IKCSNLCAEIVQYCDKDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTKIVVRNLNKII 605

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D N +    A  SN  HR +G+G+ G   A  LL IPY S EA  +     E I F A+ 
Sbjct: 606 DSNHYPTAGAANSNKKHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALE 665

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+  G Y S++ S   +G    D+  +     D L         W +L+++++  
Sbjct: 666 ASCELAKIDGPYESYENSPLFRGTMHYDNYNIYP--TDHL-------WNWSKLREKIQRH 716

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+F VVN +L+  L   +++
Sbjct: 717 GVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNIY 776

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              + + +   +GS+ NI+ IP  +K +  TA+EI    +I+ A+ R  +IDQ+QSLNL+
Sbjct: 777 TPELRNKILAENGSVQNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNLF 836

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + EP+   +  I+   W   LKT  YYLR++ A    + T+
Sbjct: 837 VAEPTYSVMSSIHFYTWQKQLKTGMYYLRTKPAAQATQFTV 877


>gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
 gi|307768605|gb|EFO27839.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
          Length = 1038

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 267/811 (32%), Positives = 417/811 (51%), Gaps = 128/811 (15%)

Query: 166 VEEACSGL-QDVSSKIVLSE-TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           + + C GL QD    I +S+     +Y G++  +L+      +  +I K P+YA + +R 
Sbjct: 32  IMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAEIAADMITKHPDYATLASRI 91

Query: 224 LLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV- 279
            +  L ++   + + V K+   ATH +               G    L+ +++  FD++ 
Sbjct: 92  AVSNLHKKTEKLFSKVSKRLYNATHPK--------------SGRHMPLISKNI--FDIIQ 135

Query: 280 ----YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
                L + + +ERDF + Y GL+ L   Y L ING   E PQ   MRVA+G+     E 
Sbjct: 136 NNADILDSAIIHERDFCYTYFGLKTLERSYLLQINGELAERPQHMLMRVALGIHGDNIEA 195

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+ DD + GIF  L++ A+++
Sbjct: 196 ---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFDDSIEGIFETLKKCALIS 252

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A                   
Sbjct: 253 KSAGGIGLNVHCIRATGSAIAGTNGVSNGLVPMLRVFNNAA------------------- 293

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
                      RKN GD+  R  D+    W+PDLFM+RV  +  W+L  P E   L D +
Sbjct: 294 -----------RKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMCPAECPGLEDSW 342

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+ FE  Y  YE +      +  +++ A  LW  +++   ETG P++ +KD CN ++ QQ
Sbjct: 343 GEAFEKLYMQYEEEG-----RYRKQVPARKLWETIVSTQIETGMPYMVYKDTCNRKTNQQ 397

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVL 632
           ++G +  SNLCTE+ L SS EE AVCNL SI  L+ F +++  FD+  L    +  VR L
Sbjct: 398 NLGTIKCSNLCTEVVLYSSREEIAVCNLASIA-LSRFVSSEMTFDFKMLREITKVVVRNL 456

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID N + + +A++SN  HR IG+G+ G   A  L+  P+ S +A ++     E + +
Sbjct: 457 NKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRIFETMYY 516

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELA E+G Y S++ S       PI          D   +  T++  W+ L+K+
Sbjct: 517 AALEASCELAMEQGPYESYERS-------PILQF-------DMWGVTPTNQWDWETLRKK 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF------------- 799
           +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y ++ +SG F             
Sbjct: 563 IAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQVKFHDTLLIRFE 622

Query: 800 ---------------------------TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
                                       V N  L+N+L + DLWD+ M  ++  + GSI 
Sbjct: 623 RITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDLMRLDLWDDDMKLEIIKNKGSIR 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           NIERIP +++ ++ T +E+    +I+ A  R  +ID +QSLN+++  P+   +  ++   
Sbjct: 683 NIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIFIARPNYGNITSMHFYG 742

Query: 893 WLMGLKT-TYYLRSRSAT-----SVEKSTLK 917
           W  GLKT  YYLR+R A      +V+K+ LK
Sbjct: 743 WQKGLKTGMYYLRTRPAVDAVQFTVDKTRLK 773


>gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
 gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
          Length = 770

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 360/642 (56%), Gaps = 33/642 (5%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L N++K+ERD+ ++Y G + L + Y L I+   +E PQ   MRVA+ +     +  K  +
Sbjct: 128 LNNEIKHERDYNYKYFGFKTLTNGYLLKIDDVIMERPQHMLMRVALAI---HGDDVKSVI 184

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E Y L+S   F  ++PTLF++GTR  Q+ SCFL ++ DD + GI+  L E+A+++   GG
Sbjct: 185 ETYQLMSLGTFTHASPTLFSAGTRRQQMCSCFLQSIKDDSVDGIYKTLHESALISNLGGG 244

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           LG            +   N    G++  L+V N+    V+QGGKRKGA+ AY+E WH ++
Sbjct: 245 LG------------LSAQNSGGSGLVNMLRVFNNMVRHVDQGGKRKGALAAYIEPWHPEI 292

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFL+LR+N G +  +  D+    WIPDLFMKRV  N  W+LFS     DL D YG +FE
Sbjct: 293 YEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKRVKNNQMWSLFSHKTCPDLADKYGFDFE 352

Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           + Y +YE        +V+ R++ A  L+R ++    ETG P++ +KD CN  S Q+++G 
Sbjct: 353 MRYCDYENA------QVYERQVKARDLFRFIVETNVETGGPYMLYKDHCNNFSNQKNLGT 406

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           +  SNLC EI       ETAVCNL SI  N         FDY  L    +  VR L+ +I
Sbjct: 407 IKCSNLCAEIVQYCDENETAVCNLASIAVNKCVDVDAKTFDYVLLKHLTKIIVRNLNKII 466

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N +   ++++SN  HR IG+G+ G   A  LL I Y S +A  +     E I F A+ 
Sbjct: 467 DVNHYPTAESERSNKKHRPIGVGIQGLADAFVLLDIAYDSDDARFVNYSIAETIYFAALE 526

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVKT 755
           AS ELA+  G Y S+  S   +G+    +        DE  +  ++ L  W+EL+  +  
Sbjct: 527 ASCELAKINGPYESYTDSPVSRGILHFHNYD------DENGVYHSNNLWDWNELQCNINK 580

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+F VVN +LV  L   D+
Sbjct: 581 YGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLVKALIDLDI 640

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +   + + +   +GS+ NI+ IP  +K +  TA+EI    +I  A+ R  +IDQ+QSLNL
Sbjct: 641 YTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWEIKSKCIINMAADRAPFIDQSQSLNL 700

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           ++ EP+   +  I+  AW   LKT  YYLR++ A    K T+
Sbjct: 701 FVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAAQATKFTV 742


>gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum]
          Length = 798

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/781 (31%), Positives = 400/781 (51%), Gaps = 52/781 (6%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+T    ++  +    P+YA + AR  +  L+++              H  
Sbjct: 52  LYPGVTTVELDTLAAETAIVMGADHPDYATLAARIAVSNLQKQT-----------KKHFS 100

Query: 249 QCLYPEYFCRYIEEGVKARLL---HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
             +   Y     + G K  L+   H  ++  +   L + + Y+RDF++ Y   ++L   Y
Sbjct: 101 DVISDLYHAVDPQTGEKTPLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFKLLERSY 160

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              ING  +E PQ   MRVA+G+  ++ +    A+E YN +S  +F+ S+ TL  +GT +
Sbjct: 161 LFKINGKTVERPQHMLMRVAVGIHGEDIDS---AIETYNYMSEGYFIHSSATLLTAGTPY 217

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           P L S +   +PDD L GI+  +     ++  +G +      +R  G  I GTNG S G+
Sbjct: 218 PYLPSTYSIAMPDDSLEGIYECISNCIKISNTTGRISVHIQNIRAKGTEIAGTNGVSNGL 277

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P L+V N++A    Q   +      +LE WH D+ +FL+L++ TG D  R  D+  A W
Sbjct: 278 VPMLRVFNNSAWLNRQSENQPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALW 337

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PDLFM RV  +  W+L  P +   L + +G+EFE  YE YE      E +  ++I A  
Sbjct: 338 VPDLFMHRVKNDEKWSLMCPHQAQGLPNCWGQEFEKLYEKYE-----SEGRFVKQIPARD 392

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +WR +     ETG P+I +KD CN +S QQ++G + SS+L TE    SSS+E A C   S
Sbjct: 393 VWRAICVSQMETGSPYILYKDACNKKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITAS 452

Query: 605 I--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +  N+  +   N +D++KL   ++T  + L+  ID++ +   +A+ SN  HR IG+G+ G
Sbjct: 453 VALNMFVNPERNGYDFEKLKQVVKTLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQG 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                 LL +P+ SPEA  +  +  E + + A+ AS E+A+  G YS++ GS   QG   
Sbjct: 513 LADTFILLRMPFESPEARSLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQ 572

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T    W  LK+R+   G+RNS  +A+ PT + A I G +QSI
Sbjct: 573 YDMWGV----------EPTKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSI 622

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+ V+   S +F  VN  L+ +L +R LW   +  ++   +GS+ NI  IPDDLK
Sbjct: 623 EPYLSNVQVRRVNSSEFRDVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPDDLK 682

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            I+ T +EI    +IE A+ R  +IDQ+Q++N+++  PS   +  ++   W  GLKT  Y
Sbjct: 683 CIYKTVWEIPQKIVIEMAADRGAFIDQSQAMNVHIGAPSYAVMSSMHFYGWQKGLKTGMY 742

Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------SSTHSLGIPSSCTSDTECEV 952
            LR+   + V+       +G  + V V   N         S      +  S  +   CE+
Sbjct: 743 NLRTNPVSVVQ-------NGNRSKVSVVQENGEKSDDMKKSPEEDAALQCSLQNPGACEM 795

Query: 953 C 953
           C
Sbjct: 796 C 796


>gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens]
          Length = 570

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 332/542 (61%), Gaps = 18/542 (3%)

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  
Sbjct: 4   DSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARY 63

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N
Sbjct: 64  VDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETN 123

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ET
Sbjct: 124 QDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAIIGSQTET 178

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQ 615
           G P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + 
Sbjct: 179 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHT 238

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ 
Sbjct: 239 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 298

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +       
Sbjct: 299 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----- 353

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +
Sbjct: 354 -----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVL 408

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    
Sbjct: 409 SGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKT 468

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + 
Sbjct: 469 VLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQF 528

Query: 915 TL 916
           TL
Sbjct: 529 TL 530


>gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis]
          Length = 520

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/534 (40%), Positives = 326/534 (61%), Gaps = 18/534 (3%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLG 401
           YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG+G
Sbjct: 2   YNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGIG 61

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVE 460
              + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH DV 
Sbjct: 62  VAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDVF 121

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E   L +++G +FE 
Sbjct: 122 DFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFEE 181

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            YE YER+      +  + + A  +W  ++    ETG P++ +KD CN +S QQ++G + 
Sbjct: 182 LYEKYEREG-----RARKVVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 236

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDIN 639
            SNLCTEI   +S +E AVCNL S+ L  +  + + FD+ KLA   +  V+ L+ +I+IN
Sbjct: 237 CSNLCTEIVEYTSEKEVAVCNLASLALNMYVTSERSFDFKKLADVTKVIVKNLNKIIEIN 296

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A  +  +  E I + A+ +S 
Sbjct: 297 FYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESSC 356

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E G Y +++G    +G+   D   +            T    W  LK+++   G+R
Sbjct: 357 ELAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGIR 406

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L ++ LW+E 
Sbjct: 407 NSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNEE 466

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           M + +  ++GSI N+  IP +LK+++ T +EI    +I  A+ R  +IDQ+QSL
Sbjct: 467 MKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520


>gi|330897026|gb|EGH28547.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 417

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/388 (51%), Positives = 268/388 (69%), Gaps = 2/388 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRA-PEEQVQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 RADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  L
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVTAGIKFEL 269

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGL
Sbjct: 270 LNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGL 329

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E  +E RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ 
Sbjct: 330 AIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIH 389

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +NAML+K++GGLGNDWTPVR LG++I G
Sbjct: 390 DNAMLSKFAGGLGNDWTPVRALGSYIKG 417


>gi|282174153|ref|YP_003358255.1| ORF116 [Anguillid herpesvirus 1]
 gi|281308996|gb|ADA57879.1| ORF116 [Anguillid herpesvirus 1]
          Length = 833

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/664 (35%), Positives = 349/664 (52%), Gaps = 50/664 (7%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD+ F +  ++ L   Y L +N   +E PQ  FMR+A+G+   + E     +E Y 
Sbjct: 133 IDYSRDYTFNFFAIRTLERAYLLKVNERVMERPQHLFMRIAIGIHGFDLES---VLETYR 189

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGND 403
            LS   F  ++PTLF++GT   +L+SC+L T+ DD + GI+  LQE A +AK SGG+G  
Sbjct: 190 CLSEKRFSHASPTLFHAGTNFAKLASCYLVTLADDSIAGIYSTLQECAQIAKCSGGIGAA 249

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
            + VR  G+ I+ TNG + G++P L+V N     V+QGG KR GA+  +LE WH D+  +
Sbjct: 250 ISNVRAEGSAINSTNGTANGLVPMLRVFNAMTRMVDQGGNKRPGAMAVWLEPWHADIAAW 309

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDL+KN GDD  R  D+    WI DLFM+RV  +  W+L  P +   L D+YG +F   Y
Sbjct: 310 LDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQMWSLMCPKKCPGLMDVYGSDFVALY 369

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE Q         +++ A  LW  +L    E G P++ +KD CN +S QQHVGVV   
Sbjct: 370 TKYESQG-----MYVKQVEARELWTHILRSQMENGMPFMMYKDSCNRKSNQQHVGVVKCG 424

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFA-----------------------------N 613
           NLCTEI   S     AVCNL ++ L    A                              
Sbjct: 425 NLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGIRQASRTEVASSASSAVQACEDPTCR 484

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ +L       V+ L+ VID + +  + A   N   R +G+G+ G      +L + 
Sbjct: 485 KSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANHRNSQDRPLGIGVQGLADVFAMLGLA 544

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           +   EA  +  +  E + +HA++AS +LA+E   Y ++KGS   QG+F  D  G+     
Sbjct: 545 FDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYPTYKGSPVSQGIFQFDMWGVKPSAM 604

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +          W  LK+RV+  G+RNS  +A  PTA+ A I G +++ +P   NL+ + 
Sbjct: 605 HD----------WTSLKRRVQKYGVRNSLLLAPMPTASTAQIFGNNEAFEPFTNNLFTRG 654

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SGDF ++N  LV EL +  +W E     L   +GSI   E +P   + +  T +EI  
Sbjct: 655 VLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNGSIRTWEDVPQHTRDVFKTVWEISQ 714

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I  A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLRSR A +  
Sbjct: 715 KTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMHMYGWQKGLKTGMYYLRSRPAVNAI 774

Query: 913 KSTL 916
           + T+
Sbjct: 775 QFTV 778


>gi|156312488|ref|XP_001617836.1| hypothetical protein NEMVEDRAFT_v1g8281 [Nematostella vectensis]
 gi|156196039|gb|EDO25736.1| predicted protein [Nematostella vectensis]
          Length = 294

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 240/294 (81%), Gaps = 2/294 (0%)

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLCTEITLN++  E AVCNLGS+NL+ H  NN+ +  KL  TI+TA+R+LDNV+DIN +
Sbjct: 1   SNLCTEITLNTNEREIAVCNLGSVNLVNHIENNEINVAKLEKTIKTAMRMLDNVVDINFY 60

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +EKAK SN  HR +GLG+MGFQ  LH+L IPYAS EAVE AD+SME IS++A SAS +L
Sbjct: 61  PVEKAKNSNLAHRPVGLGMMGFQDCLHMLRIPYASKEAVEFADKSMELISYYAFSASSKL 120

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMR 759
           A+E+G YSS+K SLWDQG+ P+DS+ LLA+ R    L ++ + +L WDEL+  +K  GMR
Sbjct: 121 AKEKGTYSSYKDSLWDQGILPLDSLKLLAKSRGAQYLDVDESKKLDWDELRSHIKEHGMR 180

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NSNC+AIAPTATIANI G+S SI+P+YQN++VKSN+SG+FTV+N FL+N+LK   LWDE 
Sbjct: 181 NSNCLAIAPTATIANIVGISASIEPTYQNIFVKSNLSGEFTVINDFLINDLKNEGLWDEV 240

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           M+SD+KY DGS+  I+RIPD LK+++ATAFE+DP WL+E+ASRRQKWIDQAQSL
Sbjct: 241 MLSDIKYFDGSLQQIDRIPDSLKQLYATAFEMDPKWLVEAASRRQKWIDQAQSL 294


>gi|288800287|ref|ZP_06405745.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332500|gb|EFC70980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 839

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 295/920 (32%), Positives = 457/920 (49%), Gaps = 133/920 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG V  +D +KI+ AI K+F       AS    V  ++ N     V R ++ + 
Sbjct: 1   MEIIKRNGNVEQYDKNKIAVAIQKSF-------ASVGTEVNIVLINEMVDAVERFIETHS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKL 145
              + ++E IQDQVE +LMQ+G +   + Y+L+R +R++ R A ++  +DA    + P L
Sbjct: 54  D--MRNVESIQDQVEKTLMQNGFYDEAKSYILFRFQRTERRNAINNIVADAEDEDLKPIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           + +  D T + +                    S ++LS+ +K+   D + ++D  +AL+ 
Sbjct: 112 RKISSDYTSVEY--------------------SLLLLSDKFKSFCKDDMKQADKLSALVK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY-FCRYI-E 261
           ++  +  +E PN+  + AR L  KL R +          A   +   ++  Y   RY+ +
Sbjct: 152 AAVEMTTQEAPNWEFIAARLLSYKLNRSI----------AAFEDSVGVHSFYDKLRYLTD 201

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
           E +    +  S    ++   A  +K ER+    Y GL +L  RY +   N   IE  Q  
Sbjct: 202 ERLYGDYILASYSPEEIAQAATFIKEERNDLLNYSGLDLLMKRYLIRTYNNKPIESIQEM 261

Query: 321 FMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           ++ +A+ LA+ E E     V +FY++LS      +TPTL N+     QLSSCF+ TVPD 
Sbjct: 262 YLGIALHLAINEKEDRMLWVNKFYDILSKLEVTMATPTLSNARKPFHQLSSCFIDTVPDS 321

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +L   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+
Sbjct: 322 LEGIYRSLDNFAQVSKFGGGMGMYFGKVRAAGGKIRGFKGAAGGVVRWMKLVNDTAVAVD 381

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N 
Sbjct: 382 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQEDINQ 441

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W LF P+E+       L D YG+E+E  Y +    A        R +S   + R +L  
Sbjct: 442 PWHLFCPNEILSIKGYCLEDYYGEEWEKRYIDCVSDARLTR----RTLSVKDIVRLVLRS 497

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597
             ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E+               
Sbjct: 498 AVETGTPFTFNRDHVNKANPNGHKGMIYCSNLCTEIAQNMSEIESVSTEVKTDDGDTVVV 557

Query: 598 --------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                    VCNL S++L      N+    +L   +RT +R LDNVIDIN + +  A+ +
Sbjct: 558 RASKPGDFVVCNLASLSLGHLPLENE---SELTDVVRTVIRALDNVIDINFYPLPYAQIT 614

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +R++GLG+ G+  AL +  I + S E ++  D+  E I+  A+ AS ++A+++G+Y 
Sbjct: 615 NQRYRSLGLGVSGYHHALAVRGIKWESQEHLDFVDKVFETINRAAVEASSDIAKQKGSYK 674

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAP 768
            F+GS W  G               E    R    P W  L  +VK  GMRN+  +AIAP
Sbjct: 675 YFEGSDWQTG---------------EYFTKRGYTSPEWTALAAKVKEQGMRNAYLLAIAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +   DP  Q  +++         V      EL  R  W            
Sbjct: 720 TSSTSIIAGTTAGTDPVMQRFFLEEKKGAMLPRV----APELSDRTFW------------ 763

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                          ++ +A+ ID  W + +A  RQ+ IDQAQS NLY+ ++ S ++L  
Sbjct: 764 ---------------VYKSAYNIDQQWTVRAAGVRQRHIDQAQSQNLYITNDFSMRQLLE 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 809 LYLLAWRSGVKTIYYVRSKS 828


>gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 688

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/651 (36%), Positives = 360/651 (55%), Gaps = 55/651 (8%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
           ++ +  ++ Y+RDF +++ G + L   Y L ++G  +E PQ   MRV +G+ +++ +   
Sbjct: 75  ILIMPREIVYDRDFDYDFFGFKTLERLYLLKVHGKVVERPQHMLMRVVVGIHMEDIDS-- 132

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            A++ Y+L+S   F  ++PTLFN+GT  PQLSS FL  + DD   I   LQ+  ++ K +
Sbjct: 133 -AIKTYHLMSQRLFTHASPTLFNAGTPRPQLSSSFLICMRDD--SIESTLQKCDVIRKSA 189

Query: 398 GGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           G +         +  H I GTNG    V+P L V          GGK+ G    YLE WH
Sbjct: 190 GSIS--------VSVHNIQGTNG----VVPMLDVDQG-------GGKKNGPFAVYLEPWH 230

Query: 457 IDVEEFLDLRKNTGDDRRRTHD-MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
            D+ EFL ++KN G  +    + M  A WIPDLFM+RV  +  W+LF P+E   L D +G
Sbjct: 231 ADIFEFLKIQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCPNEAPGLADCWG 290

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            EFE  Y  YER+      K  +   A   +  +LT   ETG P++ FKD CN +S QQ+
Sbjct: 291 TEFERLYTKYEREG-----KAKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNRKSNQQN 345

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINL----------LAHFANNQ---FDYDKLA 622
           +G + SS+LCT +   +S  ET VCNL SI L          LA    ++   FDYDKLA
Sbjct: 346 LGTIKSSSLCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYFDYDKLA 405

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
                    LD +ID N + +E A+ SN  HR IG+G+ G   A  LL +P+ SPEA ++
Sbjct: 406 EVTAIVTNDLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQKL 465

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I +HA+ AS ELA    AY ++KGS   +G+   D   +            ++
Sbjct: 466 NKDIFETIYYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTP----------SN 515

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  WD L++ +   G+RNS  +++ PTA+ + I G ++S +P   N+Y    +SG+  +V
Sbjct: 516 RWDWDFLREMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILV 575

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+++L +  LW   +   +   +GSI N+  IPDD+K I+ TA+EI    +++ A  
Sbjct: 576 NKHLLHDLTEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVD 635

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
           R  +IDQ+Q+LN+ L+EPS +KL  ++   W  GLKT  +YLRSR+ T V+
Sbjct: 636 RGCYIDQSQTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSRATTMVK 686


>gi|320120416|gb|EFE27702.2| ribonucleoside-diphosphate reductase, alpha subunit [Filifactor
           alocis ATCC 35896]
          Length = 842

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/924 (32%), Positives = 462/924 (50%), Gaps = 138/924 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q++KR+G    FD SKI  AI KAF++V     S  IR   ++  + E+  T+  + + 
Sbjct: 1   MQILKRSGEKREFDTSKIETAIQKAFLSVGLPVDSEKIR--SMVDTIEERVRTQFPKGH- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
              IV +E+IQD VE  L+++ ++ + + Y+LYR     +R      +   SD  I  +L
Sbjct: 58  ---IVTVEEIQDLVEIVLIENNYYAVVKSYILYRASHHTMRKVIEDFEDYFSDKSIVEEL 114

Query: 146 ----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
               KI  +D   ++F  ++ +  ++                         ++E +    
Sbjct: 115 REIQKIFTEDVYNLTFLFQKFKAFIK-----------------------TNMTEEEYLGI 151

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  KE P +  V AR L  +L + +        ++A   E+     +      
Sbjct: 152 LIRAASELTSKEAPKWEFVAARLLSLQLNKRI-------EERANRLELYSFRDKIHYLTK 204

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQA 319
           E+     +L +   D ++  L + LK ERD+ F Y GL ++  RY +    G  +E  Q 
Sbjct: 205 EKRYGDYILEQYQED-EIDELESYLKQERDYLFNYSGLDLVIKRYLITDREGEVLEKVQE 263

Query: 320 FFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FM +AM LA+ E E K K A + Y+++S      +TPT+ N+     QLSSCF+ TVPD
Sbjct: 264 MFMGIAMHLAIPEKENKVKWAKKIYDVISQLKVTMATPTMSNARKPFHQLSSCFIDTVPD 323

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   + ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV
Sbjct: 324 TLDGIYRSITNFSQVSKHGGGMGLYFGKVRAMGSDIRGHKGVAGGVIRWIKLANDTAVAV 383

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GA   YL+ WH DV EFL +R N GDDR + HD+  A  +P+ F K   +N  
Sbjct: 384 DQLGVRQGACAVYLDIWHKDVPEFLQIRTNNGDDRMKAHDVFPAICVPNYFWKLAKENRD 443

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           A W +  P E+       L D YG+E+E   E Y+   +   I   R I+   + R +L 
Sbjct: 444 ANWYMMCPHEIEQVKGFRLEDCYGEEWE---EKYQSCIEDSRIDK-RVITIKDMVRLILR 499

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
              ETG P++  +D  N  +P  H G+++SSNLCTEI  N  + E+              
Sbjct: 500 SAIETGTPFVFNRDIVNEYNPNSHKGMIYSSNLCTEIAQNMQAIESISTEIVVVDGEEIV 559

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S+ L      N+ + +++ ST+   VR LDNVI++N + +  AK 
Sbjct: 560 VEKNKAGDFVVCNLASLVLGNIDVKNKKELEEVVSTV---VRALDNVIELNYYPLPYAKI 616

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+  +L    + + S E ++ ADE  E I++ AI  S EL++E+GAY
Sbjct: 617 TNQKYRAIGLGTSGYHHSLVKNGMLFQSEEHLKFADEVYEDINYFAIKTSCELSKEKGAY 676

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G +            D+   + T    W+EL+K V   GMRN   MA+AP
Sbjct: 677 PYFEGSDWSNGNY-----------FDKRNYHSTR---WNELRKEVNQYGMRNGYLMAVAP 722

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T + + I G + SIDP                V+  + + E K                 
Sbjct: 723 TGSTSVISGTTASIDP----------------VMKRYFLEEKK----------------- 749

Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           G I  + R+  DL      ++  A EID  W+I+SA  RQ+ IDQ+QS+NLY+  E S  
Sbjct: 750 GQI--VPRVAPDLTAETFWMYENAHEIDQNWVIQSAGIRQRHIDQSQSVNLYITTEFSMS 807

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  +Y  A+  G+KT YY+RS+S
Sbjct: 808 RMLKLYISAYEHGVKTIYYVRSKS 831


>gi|293401950|ref|ZP_06646090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304608|gb|EFE45857.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 835

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 298/928 (32%), Positives = 455/928 (49%), Gaps = 155/928 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G + +FD  K+ +A+ KAF+A             D+  +  +Q    + Q  +
Sbjct: 3   MKIIKRDGTIQTFDSEKMIQAMKKAFVA-------------DVPMDQLKQIAMEITQEIQ 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
            +  V +EDIQD VE  LM    +   + Y+LYRE+R + R       H   D  + P  
Sbjct: 50  GSAKVSVEDIQDLVEQKLMAYQFYNEAKAYILYREKRKEKRQMLLELCHEVQDEKLLP-- 107

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
                           + M +++      D+ +  +   ++  + + +   +    L+ +
Sbjct: 108 ----------------IFMQIQKDFDETYDLHALYIKFHSF--LKETMGHEERLQMLMKA 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYF 256
              LI KE P +  + ARFL  +L +E+        LT+ Y+K Q  +    Q LY  Y 
Sbjct: 150 CVELISKETPKWEYIAARFLSYQLHQEINARMKQLQLTSFYEKIQYLSK---QGLYGAYM 206

Query: 257 C-RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314
              Y +E +                L   +K ERD  F Y GL+++  RY L  +  ++ 
Sbjct: 207 LDAYQKEEIDE--------------LKRYVKDERDALFTYSGLELVVKRYLLRTHDLQLM 252

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FM +AM LA+ ET +   A + Y++LS+     +TPT+ N+   + QLSSCF+ 
Sbjct: 253 ETPQEMFMGIAMHLAIPETNRVYWAKQIYDILSTLKVTMATPTMANARKPYHQLSSCFID 312

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L  I+ ++   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDT
Sbjct: 313 TVADTLANIYKSIDNFAQISKYGGGMGLYFGKVRANGSDIRGFKGAAGGVIRWIKLVNDT 372

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           A AV+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   
Sbjct: 373 ATAVDQLGVRQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAICYPDLFWKMAK 432

Query: 495 Q--NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  NA W L  P E+       L D YG+E+E   E Y    +   I   R++    L R
Sbjct: 433 EDLNATWYLMCPHEIGKVKGYQLEDFYGEEWE---ERYFDCVNDARISK-REMILKDLVR 488

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------- 594
            +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+             
Sbjct: 489 LILKSAVETGTPFTFNRDQVNKMNPNGHKGMIYCSNLCTEIAQNMSAITLTEPQIIKVDE 548

Query: 595 EET----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EE            VCNL S++L      N+    +L+  I T VR LDNVID+N + I 
Sbjct: 549 EEIVVNKSKPGDFVVCNLASLSLGNIDVTNK---QELSHIIHTIVRALDNVIDLNYYPIP 605

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A+ +N  +RAIGLG+ G+   L    + + S E ++  D   E I+ +AI AS  LA+E
Sbjct: 606 YAEITNRQYRAIGLGVSGYHHMLVKQGLRFESEEHLQFVDTLFETINAYAIQASNVLAKE 665

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y  FKGS WD G +     G   E              W +L + V T GMRN+  +
Sbjct: 666 KGSYQYFKGSDWDSGAY-FTKRGYQNEC-------------WQKLAQDVHTYGMRNAYLL 711

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+APT++ + I G S  +DP                ++N + + E K             
Sbjct: 712 AVAPTSSTSIIAGTSAGVDP----------------IMNKYFLEEKK------------- 742

Query: 825 KYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
               GS+  I R+  DL      ++  A +I   W++++A  RQ+ IDQAQS+NLY+ +E
Sbjct: 743 ----GSM--IARVAPDLNPQTFWLYKNAHQIQQEWIVKAAGIRQRHIDQAQSVNLYITNE 796

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            + + +  +Y QAW  G+KT YY+RS++
Sbjct: 797 FTLRTVLNLYIQAWENGVKTLYYVRSKA 824


>gi|42525857|ref|NP_970955.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           denticola ATCC 35405]
 gi|41815907|gb|AAS10836.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           denticola ATCC 35405]
          Length = 845

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 295/926 (31%), Positives = 470/926 (50%), Gaps = 139/926 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE    S    +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVEN---SPHTDLDTIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +V +E IQD VE +L++  ++   + ++LYR  R+  R                   
Sbjct: 58  NGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRR------------------- 98

Query: 149 MDDGTLIS--FNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
            D   +IS  F++  ++ ++ E  +    D  S  +L+  + +   + +SE++    LI 
Sbjct: 99  -DSRQMISRFFDTIEIQSVLTEIQNDFTSDEYSLNLLAHKFLSFRKENMSETESLAMLIK 157

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCR 258
           +S  L  ++ P++  + AR L+ + + ++ T + K+      +K  + E + LY  Y C 
Sbjct: 158 ASVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGLYGTYIC- 216

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMP 317
                       E+    +L   A+ +  ER+  F Y  L +L  RY +H + + + E P
Sbjct: 217 ------------EAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIHTHSNIVLESP 264

Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           Q  F+ +A+ LA+KE  K    V  FY++ S+     +TPTL N+   + QLSSCF+ TV
Sbjct: 265 QEMFLGIALHLAMKEKLKRLEWVRRFYDMTSTLKVTMATPTLSNARKPYHQLSSCFIDTV 324

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD L GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAV
Sbjct: 325 PDSLDGIYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAV 384

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495
           AV+Q G R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V   
Sbjct: 385 AVDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDD 444

Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            N+ W L  P E+       L D YG+E+E  Y++    +   +    R+I    L R +
Sbjct: 445 INSSWHLMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKELVRLI 500

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594
           L    ETG P+   +D  N  +   H G+++ SNLCTEI+ N S                
Sbjct: 501 LKSAVETGTPFAFNRDHANKTNTNPHKGMIYCSNLCTEISQNMSGIKHKNIEIKTEDGDT 560

Query: 595 --------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    +  VCNL S+ L     N++ + D + S+   AVR LDNVID+N + I  A
Sbjct: 561 VVATTTIPGDFVVCNLASLVLGNIDVNDEQEIDTIVSS---AVRALDNVIDLNFYPIPYA 617

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + +N  +R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G
Sbjct: 618 QITNSRYRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKG 677

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +YS F+GS W  G +         + R+ +  N      W  L + VK+ GMRN+  +A+
Sbjct: 678 SYSYFEGSDWQTGEY--------FKKRNYVDEN------WKALTEEVKSNGMRNAYLLAV 723

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT++ + I G +  +DP                ++N + + E K               
Sbjct: 724 APTSSTSIIAGTTAGVDP----------------IMNKYFLEEKK--------------- 752

Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
             GS+  + R+   L      ++  A  I+  W I +A  RQ+ IDQAQS+NLY+ +E +
Sbjct: 753 --GSL--MPRVAPSLSPETYWLYKNAHHIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFT 808

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRS 907
             K+  +Y +AW  GLK+ YY+RSRS
Sbjct: 809 FSKVLSLYVKAWEEGLKSIYYVRSRS 834


>gi|325478799|gb|EGC81909.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 842

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 289/917 (31%), Positives = 457/917 (49%), Gaps = 124/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G    F+  KI RAI KAF +V+     + +R       ++E+    + Q   
Sbjct: 1   MQIIKRDGNKVDFEKIKIERAISKAFFSVDSSITEKDLR------KMSEKIEQTIKQKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E++QD VE +L+   +++  + ++LYR          +    D  +       
Sbjct: 55  KDHIPTVEEVQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKVLADFSRY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++D  +++  ++    + EE  +    + S +   E++  +   ++E D+  AL  ++  
Sbjct: 105 IEDKKVLNIITE----VQEEFDNQRYPIESLLFKFESF--LKPNMTEEDMLKALTRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+  +  +        +++ L         E+G+   
Sbjct: 159 LTSKESPDWEIIAARFLMYQIDLEIEKSEERYELFDFKSKIEFL--------TEKGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326
            + E+    ++  L   + Y R+  F Y GL +L  RY + +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSSEEIDELEKYMDYSRNNIFTYSGLDLLRKRYLITNHKGDLIERVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEADKVAFAKRLYDILSNLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K  R   NA W +F P
Sbjct: 391 AVAVYLDIWHKDIPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKLTRDDINADWHMFDP 450

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D YG+EFE  Y       D       R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKALEDTYGEEFEEFYHKLVADKDISR----RTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597
           +I  +D  N  +P +H G+++SSNLCTEI  N S  E+                      
Sbjct: 507 FIFNRDIVNKANPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N+  D   L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVNDPTD---LEETVRTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAVE-IADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +   +A E   D   E I+++AI  S+E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIRWQDEKAHEDFVDRVYEDINYYAIKESMEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G +         + RD     ++ R  W+ELK+ VK+ G+RN   MA+APT + + I
Sbjct: 684 WDTGAY--------FDQRD----YKSER--WEELKEEVKSNGLRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP                +++ + + E K                 G+I  + 
Sbjct: 730 SGTSAGVDP----------------IMSRYFLEEKK-----------------GAI--VP 754

Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           R+   L      ++  A +ID    +  A  RQ+ IDQAQS+N+Y+  E + +++  +Y 
Sbjct: 755 RVAPGLTTKTFWLYENAHDIDQNISMRMAGVRQRHIDQAQSVNIYITTEYTMRQILNVYI 814

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+K+ YY+R +S
Sbjct: 815 TAWESGVKSIYYVRGKS 831


>gi|325846379|ref|ZP_08169348.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481563|gb|EGC84603.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 842

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 294/917 (32%), Positives = 456/917 (49%), Gaps = 124/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+   +  ++   D I    E T+      + 
Sbjct: 1   MEVKKRDGKVVDFEREKINRAIFKSFRSVDSVISEENL---DKISLNIENTIKERYPKDH 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +           D  +    +  
Sbjct: 58  ---VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFESY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DD   +S     ++ I EE  +    + S  +  E++      +++  L  ALI ++  
Sbjct: 105 IDDDYTLSI----IKDINEEYDNQRYPIESLYLKFESFTKA--NMTKEALLNALIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARF++  +  ++  +  K        ++Q L           G+   
Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL--------TSVGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E+  + DL  L   LK ER+  F Y GL ++  RY +    G  IE  Q  FM ++M
Sbjct: 211 YILEAYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIGEKDKVYFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A  +P+LF K    N G  W +F P
Sbjct: 391 AVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPNLFWKECRDNIGGDWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE   E Y +     EI   R I+   L R ++    ETG P
Sbjct: 451 HEVLVKYGKSIEDTYGEEFE---EFYHKLVKDKEISK-RVIAIKDLIRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597
           ++  +D  N  +P +H G+++SSNLCTEI  N S  ET                      
Sbjct: 507 FVFNRDAVNKANPNKHKGIIYSSNLCTEIAQNMSPSETVNEEIKTVDGETVIVNTTKPGD 566

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N++ + +++ STI   VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGNIDVNDKKELEEVVSTI---VRALDNVIDLNYYPTSYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I ++  +A +E  D+  E I++ AI AS E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLEFVDKVYEDINYFAIKASNEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              D           W++LKK V   G+RN   +AIAPT + + I
Sbjct: 684 WDNG--------------DYFTQRGYESERWEKLKKDVHENGLRNGYLLAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP                ++N + + E K                 G+I  + 
Sbjct: 730 SGTSAGVDP----------------IMNKYFLEEKK-----------------GAI--VP 754

Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           R+   L      ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  E + +++  IY 
Sbjct: 755 RVAPGLNTKTFWLYENAYTIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYL 814

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+K+ YY+R +S
Sbjct: 815 TAWEAGVKSLYYVRGKS 831


>gi|227501019|ref|ZP_03931068.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216792|gb|EEI82190.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 842

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 289/917 (31%), Positives = 460/917 (50%), Gaps = 124/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   SF+  KI +AI KAF +V+      SI  +D ++ ++++    + +   
Sbjct: 1   MEIIKRDGTRASFERVKIEKAIAKAFNSVD------SIISKDDLEKMSKRIEETIREKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              IV +E+IQD VE +L+   +++  + ++LYR          +    D  I       
Sbjct: 55  KDHIVSVEEIQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKIIGDFSKY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +++  ++    I  E  +    + S +   E++  +   ++E D+  A+  ++  
Sbjct: 105 ISDKEVLAIITR----IQTEFDNQRYPIESLLFKFESF--LKANMTEEDMLKAITRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+        +K+        +        E G+  +
Sbjct: 159 LTSKEAPDWEIIAARFLMYQINLEI--------EKSEERYELFDFKAKIAFLTENGLYGK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326
            + E+    ++  L + + + RD  F Y GL ++  RY + +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSKDEIDELESYMDFTRDDIFTYSGLDLVKKRYLITNHQGDLIEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKDKISFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF  + R   NA W +F P
Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE  Y+      D       R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKAIEDTYGEEFEDFYKKLVEDKDISR----RTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           +I  +D  N  +P +H+G+++SSNLCTEI  N S  E+                      
Sbjct: 507 FIFNRDAVNRLNPNKHMGMIYSSNLCTEIAQNMSPSESVSTEIIDENGDTIIVNKTRPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D  +L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVN---DASELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I + + +A  E  D   E I+++AI  S+E+A+E+GAYS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDISWQNEQAHGEFVDRVYEDINYYAIKESLEIAKEKGAYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +         ++RD     ++ R  W+EL+  +K  G+RN   MAIAPT + + I
Sbjct: 684 WESGAY--------FDLRD----YKSQR--WEELRGEIKRHGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP                +++ + + E K                 G+I  + 
Sbjct: 730 SGTSAGVDP----------------IMSRYFLEEKK-----------------GAI--VP 754

Query: 836 RIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           R+   L       +  A +ID    +  A  RQ+ IDQAQS+N+Y+  E S ++L  IY 
Sbjct: 755 RVAPGLTTKTFWFYENAHDIDQNISMRMAGIRQRHIDQAQSVNIYITTEYSMRQLLNIYI 814

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+K+ YY+R +S
Sbjct: 815 SAWESGVKSIYYVRGKS 831


>gi|319936386|ref|ZP_08010802.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
 gi|319808501|gb|EFW05053.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
          Length = 835

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 286/912 (31%), Positives = 450/912 (49%), Gaps = 129/912 (14%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ---DIIKNLTEQTVTRLLQHNKS 89
           KRNG    +D  KI  AI+KAF     +G   +I  Q   +I+ ++ +Q   R       
Sbjct: 5   KRNGLYQDYDRHKIENAIIKAF-----EGIHETIHQQHLENILNDVEDQIQER------- 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E IQD+VE +LM+ G+ ++ + Y+LYRE+   +R           +  +L  M+
Sbjct: 53  ---ISVEYIQDKVEEALMRHGYLQVAKAYILYREKHHHLRI----------VIEELMQML 99

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           +D  + S       +I  +      + S +++L +      +G+++ D    L+ +S  L
Sbjct: 100 NDEGIESL------LIKIQKDYPQTEYSLQLLLVKLKTFYKEGMNQHDAFKMLMKASVEL 153

Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIEEGVKAR 267
           I K+ P + K++ARFL   + + +   +      + + ++  L  E Y+  YI E    +
Sbjct: 154 ISKDAPEWEKISARFLTYDIHQRIQEKMETMGIYSFYDKLVYLTKENYYGDYILEHYSHK 213

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E         L + +K ER+  F Y GL+++  RY +   N   +E PQ  FM +AM
Sbjct: 214 DIQE---------LESYMKDERNEVFTYSGLELIMKRYLIQDRNRDILEKPQEMFMGIAM 264

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+KE EK K A + Y++LS+     +TPT+ N+     Q+SSCF+ TV D L GI+ +
Sbjct: 265 HLAMKEKEKVKWAKDIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGIYKS 324

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L   A ++K+ GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G R+G
Sbjct: 325 LDNFAKVSKHGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGVRQG 384

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504
           A   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K  +   +A W +  P
Sbjct: 385 AAAVYLDAWHRDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKSDLDASWYMMCP 444

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+ +     L D YG+E+E  Y  YE   D    K  R +S   + R ++  L ETG P
Sbjct: 445 HEIHEVKGYYLEDTYGEEWERKY--YECVEDERISK--RVMSVKDIVRLIIKSLVETGTP 500

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597
           +   +D  N  +P  H G+++ SNLC+EI  N SS E                       
Sbjct: 501 FAFNRDHVNRMNPNAHQGMIYCSNLCSEIAQNMSSMEILPHEQIQIDGETIVVEKTKPGD 560

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      N     +L   I   +R LDNVID+N + +  AK +N  +R +
Sbjct: 561 FVVCNLASLTLGHIDVKND---KELQHIIYVVMRALDNVIDLNYYPVPYAKITNQKYRPV 617

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L  L + + S E +E  D+  E I+++A+ AS  LA+E+G Y  F GS +
Sbjct: 618 GLGTSGYHHMLVKLGMTFESHEHLEFVDQLYEKINYYALEASCALAKEKGKYDYFDGSDF 677

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           D G +                        W  L+  +   G+RN   +A+APT++ + I 
Sbjct: 678 DTGAY--------------FEKRHYQSSSWQVLQNDIHEYGLRNGYLLAVAPTSSTSIIA 723

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G + ++DP  +  +++       T V      +L  +  W                    
Sbjct: 724 GTTAAVDPIMKKFFMEEKKGSMMTRV----APDLNMKTFW-------------------- 759

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                  ++  A  ID  W+IE+A  RQ+ IDQ+QS+NLY+ +E + +KL  +Y +AW  
Sbjct: 760 -------LYKNAHHIDQQWVIEAAGIRQRHIDQSQSVNLYITNEFTFRKLLDLYIKAWEK 812

Query: 896 GLKTTYYLRSRS 907
           G+KT YY+RS+S
Sbjct: 813 GVKTLYYVRSQS 824


>gi|256545922|ref|ZP_05473277.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398344|gb|EEU11966.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 842

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 294/919 (31%), Positives = 458/919 (49%), Gaps = 128/919 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+   +  ++   D I    E+T+      + 
Sbjct: 1   MEVKKRDGQVVDFEREKINRAIFKSFRSVDSVISDENL---DRISLNIEKTIKERYPKDH 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +           D  +    +  
Sbjct: 58  ---VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFEAF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIFSS 206
           +DD   +S     ++ I +E  +    + S  +  E++  KNM    ++  L  ALI ++
Sbjct: 105 IDDEYTLSI----IKDINDEYDNQRYPIESLYLKFESFTKKNM----TKEALLNALIKAA 156

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  KE P++  + ARF++  +  ++  +  K        ++Q L           G+ 
Sbjct: 157 SELTSKEAPDWEFIAARFMIHLINLKISLSEEKYGIVDFRSKVQYL--------TSAGLY 208

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + ES  + DL  L   LK +R+  F Y GL ++  RY +    G  IE  Q  FM +
Sbjct: 209 GSYILESYTNKDLEELGAYLKEDRNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGI 268

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +M LA+ E ++   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+
Sbjct: 269 SMHLAIGEKDQVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIY 328

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R
Sbjct: 329 RSITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIRNVAGGVIRWIKLANDTAVAVDQLGVR 388

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF K    N G  W +F
Sbjct: 389 QGAVACYLDIWHKDIPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMF 448

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P EV       + D YG+EFE   E Y +  +  EI   R I+   L R ++    ETG
Sbjct: 449 DPHEVFVKYGKSIEDTYGEEFE---EFYYKLVNDKEISK-RVIAIKDLIRLLIKSWTETG 504

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------------ 599
            P++  +D  N  +P +H G+++SSNLCTEI  N S  ET                    
Sbjct: 505 TPFVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKP 564

Query: 600 -----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNL S+ L     N++ + +++ STI   VR LDNVID+N +    AK +N  +R
Sbjct: 565 GDFVECNLASLTLGNIDVNDKEELEEVVSTI---VRALDNVIDLNYYPTPYAKVTNKKYR 621

Query: 655 AIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           AIGLG  G+   L    I ++  +A ++  D+  E I++ AI AS E+A+E+G+YS F G
Sbjct: 622 AIGLGTSGYHHMLVKNDIKWSEEDAHLDFVDKVYEDINYFAIKASNEIAKEKGSYSCFDG 681

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WD G              D           W+ LKK V   G+RN   +A+APT + +
Sbjct: 682 SDWDNG--------------DYFKQRGYESERWENLKKDVHENGLRNGYLLAVAPTGSTS 727

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP                ++N + + E K                 G+I  
Sbjct: 728 IISGTSAGVDP----------------IMNKYFLEEKK-----------------GAI-- 752

Query: 834 IERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           + R+   L      ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  E + +++  I
Sbjct: 753 VPRVAPGLNTKTFWLYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNI 812

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y  AW  G+K+ YY+R +S
Sbjct: 813 YLTAWEAGVKSLYYVRGKS 831


>gi|319902177|ref|YP_004161905.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417208|gb|ADV44319.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
          Length = 839

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 292/917 (31%), Positives = 450/917 (49%), Gaps = 127/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F++   K    +I    I+    E  V   +++  
Sbjct: 1   MEITKRNGTREPYDKEKIATAIRKSFISTGQKVTDETIY---ILVREVENFVDGNMENR- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPKL 145
                ++E IQD+VE  LM+ G +   + Y+LYR +R++ R A ++      D  +   L
Sbjct: 57  -----NVERIQDEVERCLMEHGFYTEAKNYILYRWQRTERRKALNNIVNEVGDTTLMDIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIF 204
           K +  D T   +                    S I+L+E + + Y   ++  +  TAL+ 
Sbjct: 112 KSIQQDFTCNEY--------------------SLIMLAEKFSSFYKPEMASKERLTALVK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +E+      K Q+     +   Y E  C    EG
Sbjct: 152 AAIELTTQEAPDWEFIAARILNFQLSKEL------KEQEGVAG-IHSFY-EKLCFLTNEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
           +    +  +    ++      L  ERD    Y GL +L  RY +     + IE  Q  ++
Sbjct: 204 LYGDYILAAYSPQEIEEAEGFLCSERDKLLNYSGLDLLAKRYLIRTRSHQLIESVQEMYL 263

Query: 323 RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E +     V+  Y+LLS      +TPT+ N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPENKNRMSWVKKIYDLLSCLEATMATPTMANARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGLYFGKVRASGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF  M +   N  W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQVW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +F P+E+       L D YGKE+E  Y    + +   +    R IS   + R +L    
Sbjct: 444 YMFCPNEIMTVKGYCLEDFYGKEWECRYLECVKDSRLSK----RSISIKDIIRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+ E                  
Sbjct: 500 ETGTPFTFNRDTVNYANPNTHKGIIYCSNLCTEIAQNMSAIENISTDIKTKEGDTVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L  H      D +++   + T VR LDNVID+N + +  A+ +NH
Sbjct: 560 VRPGDFVVCNLASLSL-GHLPLE--DEEQMRDKVATIVRALDNVIDLNFYPVPFARITNH 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL L  I + S E +   D+  E I++ AI AS +LA+E+G Y+ F
Sbjct: 617 RYRSIGLGVSGYHHALALRGIHWESDEHLHFMDKVFERINYAAIQASADLAKEKGKYAYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +               +    +   W  L K+V   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FSKRGYTSSAWQRLAKKVSEYGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              I G +   DP                V+  F + E K       AM+  +       
Sbjct: 723 TGIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA------ 754

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + D    I+  A+ ID  W I +A  RQ+ +DQAQSLNLY+ +E + +++  +Y 
Sbjct: 755 ---PGLSDKTYWIYKGAYLIDQQWSIRAAGIRQRHLDQAQSLNLYITNEFTMRQVLRLYL 811

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+KT YY+RS+S
Sbjct: 812 LAWECGVKTLYYVRSKS 828


>gi|313900055|ref|ZP_07833555.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
 gi|312955107|gb|EFR36775.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
          Length = 838

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 297/927 (32%), Positives = 460/927 (49%), Gaps = 148/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  F+  KI++AI KAF +  G     S+ +++II+++T+         +K
Sbjct: 1   MKIQKRDGQLQEFEGEKIAQAIRKAFRST-GTLIEESV-LKEIIEDITKAAAA-----DK 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             L V +  +QD VE  LMQ   +K  + Y+LYR++R++ R                K++
Sbjct: 54  PMLSVEV--VQDLVEEELMQHQFYKEAKNYILYRQKRTESR----------------KVV 95

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---------VLSETYKNMYDGLSESDLE 199
            D   L+    K      E+  S L D+  +          +L + +  + + +   +  
Sbjct: 96  QD---LVHALQK------EDLYSILADIQQRYPDEGYDLRHLLMKFHSFLKEDMESDERL 146

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             L+ +S  LI KE P +  + +RFL   L  E+   + K        +++ L       
Sbjct: 147 HMLMKASVELISKEAPKWEYIASRFLSYALHEEISARMQKLELPVFSKKLKYLE------ 200

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMP 317
             E+G     + ++  D ++  L   LK ERD+ F Y GL+++  RY +  +   + E P
Sbjct: 201 --EQGYYGDYIRKAYSDAEIDELGAYLKDERDYLFTYSGLELVKKRYLMCSHAHEVLETP 258

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM LAL E  +   A + Y++LS      +TPT+ N+   + QLSSCF+ TV 
Sbjct: 259 QEMFMGIAMHLALPEQNRMYWAKQIYDILSQLQVTMATPTMSNARKPYHQLSSCFIDTVE 318

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I+ ++   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDTA A
Sbjct: 319 DTLNNIYKSVDNFAQVSKYGGGMGLYFGKVRANGSDIRGFEGAAGGVIRWIKLVNDTATA 378

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   +  
Sbjct: 379 VDQLGVRQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDL 438

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA--LWRK 548
           NA W L  P E+       L D YG+E+E      ER  D  +     K + V   L R 
Sbjct: 439 NATWYLMCPHEIHKIKGYHLEDFYGEEWE------ERYFDCVQDPRVPKRTMVLKDLVRL 492

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------- 591
           +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N                 
Sbjct: 493 ILKSAVETGTPFTFNRDHVNRMNPNAHAGMIYCSNLCTEIAQNMKALKLEESRIVEIDGE 552

Query: 592 ------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                 S   +  VCNL S++L     NN+   ++L+  I   VR LDNVID+N + I  
Sbjct: 553 SVVVNESKPGDFVVCNLASLSLGNIDVNNE---EELSHIIHVIVRALDNVIDLNYYPIPY 609

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK +N  +R IGLG+ G+   L   ++ + S E ++ AD   E I+++AI AS  LA+E+
Sbjct: 610 AKITNRKYRPIGLGVSGYHHMLVKQNLRFESEEHLQYADTLFEKINYYAIQASTALAREK 669

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G+YS F GS W  G +     G  ++              W  L ++V+  GMRN+  MA
Sbjct: 670 GSYSMFAGSDWQSGAY-FTKRGYTSDA-------------WSRLFRQVREQGMRNAWLMA 715

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT++ + I G +  +DP                ++N + + E K              
Sbjct: 716 IAPTSSTSIIAGTTAGVDP----------------IMNKYYLEEKK-------------- 745

Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
              GS+  I R+  DL      ++  A  ID  W++ SA  RQ+ IDQAQS+NLY+ +E 
Sbjct: 746 ---GSM--IARVAPDLDARTFWLYKNAHLIDQEWVVRSAGIRQRHIDQAQSVNLYITNEF 800

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 801 TLRQVLMLYIHAWEYGVKTIYYVRSKS 827


>gi|319765946|ref|YP_004131447.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y412MC52]
 gi|317110812|gb|ADU93304.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC52]
          Length = 785

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 268/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198
           K+ I+ D G  +SF+ +    ++ +A +G      ++ L E  + ++  LS  +      
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86

Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
             +TA++     + E EP++  V AR  L +L        Y++  +   ++ +  Y +++
Sbjct: 87  LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 138

Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
              +   E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY       R
Sbjct: 139 SLLVALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 198

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           + E+PQ  F+ +AM L + E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 199 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K 
Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM
Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543
           ++V Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+
Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAI 437

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S          
Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497

Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL SINL     +       LA  I   +R+LDNVID+N   + 
Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E
Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y +F GS W  G +            +         L WD LK+ V   GMRN   M
Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 661

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP A+ + I G + SIDP +  +Y +        V     V +L ++  W        
Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                               + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K
Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +L  ++  AW  GLKTTYY+RS S T
Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776


>gi|325475466|gb|EGC78647.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 845

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 296/925 (32%), Positives = 461/925 (49%), Gaps = 137/925 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE    S    +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVEN---SPHKDLDIIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR---EERSDVRAAQSHSKSDAPIAPKL 145
           S  +V +E IQD VE +L++  ++   + ++LYR    +R D R   S       I P L
Sbjct: 58  SGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISRFFDTIEIQPIL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             + +D T   ++   L ++  +             LS   +NM    SE++    LI +
Sbjct: 118 TEIQNDFTSDEYS---LNLLAHK------------FLSFRKENM----SETESLAMLIKA 158

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCRY 259
           S  L  ++ P++  + AR L+ + + ++ T + K+      +K  + E + LY  Y C  
Sbjct: 159 SVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGLYGTYIC-- 216

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318
                      E+    +L   A+ +  ER+  F Y  L +L  RY +  + + + E PQ
Sbjct: 217 -----------EAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIRTHSNTVLESPQ 265

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             F+ +A+ LA+KE       V  FY++ SS     +TPTL N+   + QLSSCF+ TVP
Sbjct: 266 EMFLGIALHLAMKEKSNRLEWVRRFYDMTSSLKVTMATPTLSNARKPYHQLSSCFIDTVP 325

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVA
Sbjct: 326 DSLDGIYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVA 385

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V    
Sbjct: 386 VDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDI 445

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           N+ W L  P E+       L D YG+E+E  Y++    +   +    R+I    L R +L
Sbjct: 446 NSSWHLMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKDLVRLIL 501

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
               ETG P+   +D  N  +P  H G+++ SNLCTEI+ N S                 
Sbjct: 502 KSAVETGTPFAFNRDHANKTNPNPHKGMIYCSNLCTEISQNMSEIKHKTIEIKTENGDTV 561

Query: 595 -------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   +  VCNL S+ L     N++ + D + S+   AVR LDNVID+N + I  A+
Sbjct: 562 VATTTIPGDFVVCNLASLVLGNIDVNDEKEIDTIVSS---AVRALDNVIDLNFYPIPYAQ 618

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G+
Sbjct: 619 ITNSRYRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGS 678

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           YS F+ S W  G +                        W  L + VK+ GMRN+  +A+A
Sbjct: 679 YSYFERSDWQTGEY--------------FKKRNYVDEKWKALAEEVKSNGMRNAYLLAVA 724

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  +DP                ++N + + E K                
Sbjct: 725 PTSSTSIIAGTTAGVDP----------------IMNKYFLEEKK---------------- 752

Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
            GS+  + R+   L      ++  A  I+  W I +A  RQ+ IDQAQS+NLY+ +E + 
Sbjct: 753 -GSL--MPRVAPSLSPETYWLYKNAHNIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTF 809

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
            K+  +Y +AW  G+K+ YY+RSRS
Sbjct: 810 SKVLSLYVKAWEEGVKSIYYVRSRS 834


>gi|261419129|ref|YP_003252811.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           Y412MC61]
 gi|261375586|gb|ACX78329.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC61]
          Length = 760

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 268/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198
           K+ I+ D G  +SF+ +    ++ +A +G      ++ L E  + ++  LS  +      
Sbjct: 6   KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 61

Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
             +TA++     + E EP++  V AR  L +L        Y++  +   ++ +  Y +++
Sbjct: 62  LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 113

Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
              +   E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY       R
Sbjct: 114 SLLVALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 173

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           + E+PQ  F+ +AM L + E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 174 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 233

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K 
Sbjct: 234 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 293

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM
Sbjct: 294 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 353

Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543
           ++V Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+
Sbjct: 354 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAI 412

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S          
Sbjct: 413 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 472

Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL SINL     +       LA  I   +R+LDNVID+N   + 
Sbjct: 473 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 527

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E
Sbjct: 528 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 587

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y +F GS W  G +            +         L WD LK+ V   GMRN   M
Sbjct: 588 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 636

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP A+ + I G + SIDP +  +Y +        V     V +L ++  W        
Sbjct: 637 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 684

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                               + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K
Sbjct: 685 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 725

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +L  ++  AW  GLKTTYY+RS S T
Sbjct: 726 ELLDLHLTAWKSGLKTTYYVRSTSGT 751


>gi|258511566|ref|YP_003185000.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478292|gb|ACV58611.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 772

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 260/790 (32%), Positives = 398/790 (50%), Gaps = 95/790 (12%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG +   +  ++   ++  C   +    + + ++ +  + DG+  S++    I   +  +
Sbjct: 34  DGRIEPLSLDKIFAFLKRGCEAAEGCDPERLAADVWPQLRDGMRTSEIARVAI---QAAV 90

Query: 211 EK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE---G 263
           EK    EP +  V AR LL           YK+  +   +     Y +++   +E    G
Sbjct: 91  EKTSVAEPGWQFVAARLLL--------FDAYKQASRNRGYR-HLGYGDFYQLIVELERIG 141

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
                + +   + ++  LA  +K ERD+ F Y+GL+ L DRY + +++   +E+PQ  FM
Sbjct: 142 RYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGLKQLLDRYAIRNLDNGIMELPQELFM 201

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+M LA+KE +K   A  FY++LS+     +TPTL N+     QLSSCF+    DDL  
Sbjct: 202 GVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQLSSCFIDMPEDDLVS 261

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+   +  A ++K+ GG+G     +R  G+ I    G S GV+P+++  N+TAV+ NQ G
Sbjct: 262 IYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNHPGASGGVVPWIRNFNNTAVSCNQLG 321

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R GA   YL+ WH D+ +FL LR N GD+R + HD+     IPDLFM+RV +   W LF
Sbjct: 322 MRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAHDIFPGVCIPDLFMRRVEERGMWYLF 381

Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P EV       L D +G+EFE  YE      +   +    +I A+ + ++++   FETG
Sbjct: 382 CPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLPRV----EIPAIEIMKRIMQSAFETG 437

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EET---------------A 598
            P+I F+D  N  +P +H G+V+ SNLCTEI  N S     EET                
Sbjct: 438 TPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNMSPSRRIEETEEGGIITMKTEAGDFV 497

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL S+NL         D D +   +R  +R +DNVID+N + + +A  +N  +RA+GL
Sbjct: 498 VCNLSSLNL-----GRCRDLDSIREIVRRQIRAMDNVIDLNHYPVPQAAVTNRKYRAVGL 552

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G+   L    IP+ S   V+ ADE  E+I+F AI AS+ELA+E+G Y  F+GS W  
Sbjct: 553 GVSGYHQYLAEKGIPWESEAHVKHADELFEWINFFAIEASMELAREKGPYPLFEGSDWQT 612

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +  D  G            R     WD L++ V   G+RN+  +AIAPT++ + I G 
Sbjct: 613 GRY-FDLRGY---------RTRPGGPDWDGLRREVAEHGVRNAYLVAIAPTSSTSLIAGS 662

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  IDP Y   +++   +G   VV     N L  +  W                      
Sbjct: 663 TAGIDPVYARFFLEEKKNG---VVPQTAPN-LNDKTFW---------------------- 696

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGL 897
                 +  A  ID  W IE+ + RQ+ +DQ+QS NLY+    S ++   +Y  AW  GL
Sbjct: 697 -----YYKEAHTIDQRWSIEACAARQRHVDQSQSFNLYITPGISARQFLDLYLLAWKRGL 751

Query: 898 KTTYYLRSRS 907
           KT YY+RS+S
Sbjct: 752 KTVYYVRSKS 761


>gi|257067185|ref|YP_003153441.1| ribonucleotide-diphosphate reductase subunit alpha [Anaerococcus
           prevotii DSM 20548]
 gi|256799065|gb|ACV29720.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 842

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 288/921 (31%), Positives = 459/921 (49%), Gaps = 132/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI +AI KAF +V+   +   +R    I +  E+T+      + 
Sbjct: 1   MEIIKRDGTRADFEREKIEKAIAKAFYSVDSMISEEDLRK---ISSKIEKTIKEKYPADH 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   V +E++QD VE +L+   +++  + ++LYR          +    D  +       
Sbjct: 58  T---VTVEEVQDLVELTLIDENYYREVKSFILYR----------AKHNMDRKVIGDFSKY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD----VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +DD  +++        I+ E  +   +    + S     E++  +   ++E D+  A+  
Sbjct: 105 IDDKNILN--------IITEVQADFDNQRYPIESLFFKFESF--LKANMTEEDMLKAITR 154

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  KE P++  + ARFL++++  E+  +  +        +++ L         EEG
Sbjct: 155 AASELTSKEAPDWEIIAARFLMQEINYEIEKSEERYELFDFKSKIEFL--------TEEG 206

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
           +    + E+    ++  L   + + RD  F Y GL ++  RY + +  G  +E  Q  FM
Sbjct: 207 LYGSYILENYTGEEIDELEAYMDFSRDKIFTYSGLDLVRKRYLITNHKGDILEKVQEMFM 266

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L G
Sbjct: 267 GIAMHLAIPEKDKIGFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKG 326

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G
Sbjct: 327 IYRSVTNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLG 386

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWT 500
            R+GAV  YL+ WH D+ EF+ LR N GDDR + HD+     +PDLF  + R   NA W 
Sbjct: 387 VRQGAVAVYLDIWHKDIPEFMGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWH 446

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P EV       L D YG+EFE  Y+      D       R +S   + R ++    E
Sbjct: 447 MFDPHEVEKKYGRALEDTYGEEFEEFYKKLVADKDISR----RTMSVKDMVRLLIKSWTE 502

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P++  +D  N  +P +H G+++SSNLCTEI  N S  E+                  
Sbjct: 503 TGTPFVFNRDAVNRLNPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKT 562

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNL S+ L     NN  +   L  T+RT VR LDNVID+N +    AK +N  
Sbjct: 563 KPGDFVECNLASLTLGKVDVNNSAE---LEETVRTVVRALDNVIDLNYYPTPYAKVTNKK 619

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSF 711
           +RAIGLG  G+   L    I + + EA  E  D   E I+F+AI  S+E+A+E+GAYS F
Sbjct: 620 YRAIGLGTSGYHHMLVKNDISWQNEEAHGEFVDRVYEDINFYAIKESMEIAKEKGAYSCF 679

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W+ G +         ++RD     ++ R  W++L+  VK  G+RN   MAIAPT +
Sbjct: 680 EGSDWETGAY--------FDLRD----YKSER--WEKLRAEVKENGLRNGYLMAIAPTGS 725

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G S  +DP                +++ + + E K                 G+I
Sbjct: 726 TSIISGTSAGVDP----------------IMSRYFLEEKK-----------------GAI 752

Query: 832 GNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
             + R+   L      ++  A +ID    +  A  RQK IDQAQS+N+Y+  E + ++L 
Sbjct: 753 --VPRVAPGLTTKTFWLYENAHDIDQNISMRMAGVRQKHIDQAQSVNIYITTEYTMRQLL 810

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            IY  AW  G+K+ YY+R +S
Sbjct: 811 NIYITAWEAGVKSIYYVRGKS 831


>gi|225849392|ref|YP_002729556.1| ribonucleoside-diphosphate reductase subunit alpha (ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643585|gb|ACN98635.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 1222

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 319/550 (58%), Gaps = 40/550 (7%)

Query: 370  SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            +C++  + D L  I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+K
Sbjct: 644  NCYVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGIIPFIK 703

Query: 430  VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            + +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD  
Sbjct: 704  IFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEL 763

Query: 490  MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            M+R+ +     LF P E   L   +G+EF+  YE+   +A++GE+K+++KI +   ++K 
Sbjct: 764  MRRIKEGEPIYLFDPAECPKLVTAWGEEFKKEYESCIEKAEKGELKLWKKIDSRDFYKKY 823

Query: 550  LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
            L  L +TGHPW+TFKD  N ++P     V++SSNLCTEI++ +S E TAVC L S+NL  
Sbjct: 824  LFKLAKTGHPWLTFKDRHNEKNPCPQYSVINSSNLCTEISIPNSPESTAVCTLASVNLAR 883

Query: 610  HFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            H   ++  FD+DKL  T+ T V  LDN++D N +  E+++K+    R IG+G+MGF  AL
Sbjct: 884  HVKEDKSDFDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMDLRPIGIGVMGFHEAL 943

Query: 668  HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
              L IPY S +AVE A +  +F+     + S ELA+ERGA+  +                
Sbjct: 944  IKLGIPYDSDKAVETARKIAKFMREVTYAKSEELAKERGAFPHYY--------------- 988

Query: 728  LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                   E   N   R               RN+  +A+APTA+I+ I G S SID  + 
Sbjct: 989  -------EANYNYPPR---------------RNAVLLAVAPTASISIIAGTSSSIDNYFS 1026

Query: 788  NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHA 846
            N++ +  +SG F V+N  L+ EL+++ LW E +   +K H GSI  IE +   + K ++ 
Sbjct: 1027 NIFSRDTLSGKFIVINKPLMKELEEKGLWSEELAEKIKAHQGSIQYIEELDGKIDKSLYK 1086

Query: 847  TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            TA+E+ P   I+ A+  Q++IDQA S +LY++E    K++ IY  AW  GLK+TYY    
Sbjct: 1087 TAYEVSPYRQIDIAAAFQEYIDQAVSKSLYIEEDLRDKMEDIYMYAWEKGLKSTYYCFID 1146

Query: 907  SATSVEKSTL 916
                 EK TL
Sbjct: 1147 KTVKGEKYTL 1156



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
           F  YI   V+ +LL   ++ FD+  L   + Y RD+  +Y GL  L DRY +   +   I
Sbjct: 101 FKDYINYAVEEKLLKPELLQFDIDRLEKSIDYSRDYNLDYFGLSTLKDRYLMKDRDFETI 160

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ FFMRVAMG+   E E     ++ YN LS+  ++ STPTLFNSGT   Q SSCF  
Sbjct: 161 EKPQWFFMRVAMGIGNTEDE----IIKIYNKLSNLEYLHSTPTLFNSGTLTNQYSSCFPA 216

Query: 375 TVP 377
             P
Sbjct: 217 GTP 219


>gi|56419446|ref|YP_146764.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56379288|dbj|BAD75196.1| ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           kaustophilus HTA426]
          Length = 785

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 267/806 (33%), Positives = 406/806 (50%), Gaps = 100/806 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198
           K+ I+ D G  +SF+ +    ++ +A +G      ++ L E  + ++  LS  +      
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAVAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86

Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
             +TA++     + E EP++  V AR  L++L        Y++  +   ++ +  Y +++
Sbjct: 87  LHQTAILEGLSYIDEDEPDWTFVCARLYLQQL--------YREAARQRGYDARERYGDFY 138

Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
              +   E+GV + LL E     ++    + L   +D  F Y+GL+ L DRY       R
Sbjct: 139 SLIVSLTEQGVYSPLLLERYTKEEIETAGSFLDPGKDLLFTYIGLRTLADRYLARDYERR 198

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           + E+PQ  F+ +AM L + E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 199 LYELPQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K 
Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM
Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543
           ++V Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+
Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAI 437

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S          
Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497

Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL SINL     +       LA  I   +R+LDNVID+N   + 
Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E
Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y +F GS W  G +            +         L WD LK+ V   GMRN   M
Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYQSHGELDWDRLKQDVARYGMRNGYIM 661

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP A+ + I G + SIDP +  +Y +        V     V +L ++  W        
Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                               + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K
Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +L  ++  AW  GLKTTYY+RS S T
Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776


>gi|265756567|ref|ZP_06090773.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
 gi|263233755|gb|EEZ19370.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
          Length = 839

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 305/927 (32%), Positives = 462/927 (49%), Gaps = 147/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + +              K +T++ V  ++  ++
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44

Query: 89  SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138
             L +H       +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S       D
Sbjct: 45  VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197
             I+  LK +  D     F+ K   + +               L+E + +     ++  +
Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255
              AL+ ++  L  +E P++  + AR L  +L +++          A   E   ++  Y 
Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194

Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
             RY+ +EG+    +  S    ++   A  +  ERD  F Y GL +L  RY +       
Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           IE  Q  ++ +A+ LA+ E +   + V+ FY++LS      +TPTL N+   + QLSSCF
Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TVPD L GI+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ N
Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVN 374

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF + 
Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434

Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
             Q  N  W LF P+E+       L D YGKE+E  Y +    +   +    R +S   +
Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDI 490

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
            R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET        
Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550

Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL S++ L H      D  ++   + T VR LDNVI++N + 
Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATLVRALDNVIELNFYP 607

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  A+ +NH +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA
Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761
           +E+G+Y  F+GS W  GV+ I                R    P W  L  +V T GMRN+
Sbjct: 668 KEKGSYHYFEGSDWQTGVYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + I G +   DP                V+  F + E K       AM+
Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +            + D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E 
Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828


>gi|257456710|ref|ZP_05621900.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
 gi|257445903|gb|EEV20956.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
          Length = 849

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 292/924 (31%), Positives = 458/924 (49%), Gaps = 131/924 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLLQHN 87
           + +IKRNG   +++  KI+ A+  AF +V G  A  ++     +++ +T +    + + +
Sbjct: 1   MDIIKRNGEREAYNAEKITLAMQAAFNSVTGAEAQQKNSDTGALLRQMTAEIEADIYELS 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPK 144
           K+   V +E IQD VE +L++   +   + ++LYR E++   D R A +   +   I P 
Sbjct: 61  KNGSPVQVETIQDLVEKTLIEHNRYAEVKNFILYRVEQTKKRDARRAIAAHFTLIDILPV 120

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALI 203
           L  +  D                       D  S  +L   +++     ++E++L T LI
Sbjct: 121 LTRIQQDFP--------------------DDQYSLTLLFHKFESFRKPDMTEAELLTLLI 160

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIE 261
            ++  L  +E P +  + ARFL+     ++ T + K+  ++ + ++  L  +  +  YI 
Sbjct: 161 KAAVELTAQEAPRWEFIAARFLMLDFSGKLKTELEKRNIRSFYDKLTYLEEKGLYGAYIR 220

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320
            G     L ++    D     NDL       F Y GL +L  RY +   G   +E PQ  
Sbjct: 221 AGYSKEELEQAYAYIDNS--KNDL-------FTYSGLDLLLRRYVISTRGHIPLETPQEM 271

Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+ +A+ LAL E +     V  FY +LSS     +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 272 FLGIALHLALHEQKDRMEWVRRFYLMLSSLQVTMATPTLSNARKPYHQLSSCFIDTVPDS 331

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR +GA I G  G + GVI ++K+ANDTAVAV+
Sbjct: 332 LDGIYRSIDNFAKISKFGGGMGLYFGKVRAVGAPIRGFQGAAGGVIRWIKLANDTAVAVD 391

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG- 498
           Q G R+G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF + V ++ G 
Sbjct: 392 QLGVRQGSVAVYLDVWHKDVPEFLQLRTNNGDDRMKAHDVFPAVCCPDLFWRTVDEDIGA 451

Query: 499 -WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W L  P E+       L D YG+E+E   + Y+   +   I   R+I    L R +L  
Sbjct: 452 SWYLMCPHEILTVKGYALEDFYGEEWE---KRYKDCINDNRISK-REIPVKELVRLILKS 507

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------- 593
             ETG P+I  +D  N  +P  H G+++SSNLCTEI  N S                   
Sbjct: 508 AVETGTPFIFNRDHANRANPNGHKGMIYSSNLCTEIAQNMSPIHAVNTEIQTQDGETVVV 567

Query: 594 ----SEETAVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 +  VCNL S+ L     N   D D +L   I  AVR LDNVID+N + +  AK 
Sbjct: 568 TVTKPGDFVVCNLASLVL----GNIDTDNDAELEGIIEAAVRALDNVIDLNFYPVPYAKI 623

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG+ G+   L   HI + S   +++ADE  E I+++A+ AS+++AQE+GAY
Sbjct: 624 TNEQYRAIGLGVSGYHHLLAKKHIAWESDAHLKLADELFEKINYYAVQASMQIAQEKGAY 683

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+ S W  G +                  R     W+ L++ V   G+RN   +A+AP
Sbjct: 684 RLFEDSDWQTGAY--------------FEKRRYQSERWNALREEVARHGIRNGYLLAVAP 729

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + + G +  IDP                ++  + + E K                 
Sbjct: 730 TSSTSIVAGTTAGIDP----------------IMKRYFLEEKK----------------- 756

Query: 829 GSIGNIERIPD----DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           GS+  + R+      D   ++  A  ID +W I +   RQ+ IDQ QS+N Y+ ++ S +
Sbjct: 757 GSL--VPRVAPALSLDTYWLYKNAHTIDQLWSIRACGLRQRHIDQGQSMNFYITNDYSFR 814

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  +Y +AW  G+K+ YY+RSRS
Sbjct: 815 QVLNLYVEAWKNGIKSVYYVRSRS 838


>gi|227485719|ref|ZP_03916035.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236274|gb|EEI86289.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 842

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 284/915 (31%), Positives = 454/915 (49%), Gaps = 120/915 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI RAI KAF +V+      S    + ++ + ++ V  + +   
Sbjct: 1   MKIIKRDGSKVDFELEKIKRAIFKAFKSVD------STITDEKLEYIAQKIVGTIEEKFP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E++QD VE SL+   +++  + ++LYR          +    D  +       
Sbjct: 55  VDHVVTVEEVQDLVELSLIDENYYREVKSFILYR----------AKHNMDRKVISDFTKY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  L+   SK    +  E  S    + S     E++      +++ ++  A+I ++  
Sbjct: 105 VSDKDLMEIISK----VQREFDSQRYPIESLYFKFESFTK--PEMNDKEVLDAVIRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EEGVKA 266
           L  KE P++  + ARFL  K+  E+        Q+   +++     +   R++ E+G+  
Sbjct: 159 LTSKEAPDWEIIAARFLAYKINLEI-------RQEEERYDIYDFKSK--IRFLTEKGLYG 209

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA 325
             + E+    ++  L   L Y+RD  F Y GL ++  RY +   +G  +E  Q  FM +A
Sbjct: 210 SYILENYSSAEIDELEKHLDYDRDDIFTYSGLDLIRKRYLITSYDGRLLEKVQEMFMGIA 269

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 270 MHLAIPEEDKVSFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIETVPDTLKGIYR 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+
Sbjct: 330 SITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K+V  N    W +F 
Sbjct: 390 GAVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKQVKNNMEGDWYMFD 449

Query: 504 PDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFETG 557
           P EV       + D YG+EFE   E Y++  D  EI   R+I  +  + R ++    ETG
Sbjct: 450 PHEVEKKYGRAIEDTYGEEFE---EFYKKLVDDKEIS--RRIMPIKDMVRLLIKSWSETG 504

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------------ 599
            P+I  +D  N  +P +H G+++SSNLCTEI  N S  ET                    
Sbjct: 505 TPFIFNRDLVNKYNPNKHKGIIYSSNLCTEIAQNMSPSETVSTEIVTEDGDVVIVNKTKP 564

Query: 600 -----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNL S+ L     NN     +L  T+RT VR LDNVID+N +    A+ +N  +R
Sbjct: 565 GDFVECNLASLTLGKLDVNNP---KELEETVRTVVRALDNVIDLNYYPTPYAEVTNKKYR 621

Query: 655 AIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           AIGLG  G+   L    I ++  +A  E+ D   E I+++AI  SVE+A+++G+Y  F+G
Sbjct: 622 AIGLGTSGYHHMLVKNDIRWSDEKAHAELVDRVYEDINYYAIKESVEIAKDKGSYKVFEG 681

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D        RD  +        W++L + VK  G+RN   MAIAPT + +
Sbjct: 682 SDWQSGAYFTD--------RDYTSER------WEKLAEDVKKYGLRNGYLMAIAPTGSTS 727

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP     +++         +   +   L  +  W                 
Sbjct: 728 IISGTSAGVDPIMSRYFLEEKKGA----IVPRVAPGLTTKTFW----------------- 766

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                     ++  A +ID    +  A  RQ+ +DQAQS+N+Y+  E + +++  +Y  A
Sbjct: 767 ----------LYENAHDIDQNISMRMAGIRQRHLDQAQSVNIYITTEYTMRQILNVYLTA 816

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+K+ YY+R +S
Sbjct: 817 WESGVKSIYYVRGKS 831


>gi|212693365|ref|ZP_03301493.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
 gi|212664009|gb|EEB24583.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
          Length = 839

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 303/927 (32%), Positives = 461/927 (49%), Gaps = 147/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + +              K +T++ V  ++  ++
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44

Query: 89  SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138
             L +H       +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S       D
Sbjct: 45  VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197
             I+  LK +  D     F+ K   + +               L+E + +     ++  +
Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255
              AL+ ++  L  +E P++  + AR L  +L +++          A   E   ++  Y 
Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194

Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
             RY+ +EG+    +  S    ++   A  +  ERD  F Y GL +L  RY +       
Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           IE  Q  ++ +A+ LA+ E +   + V+ FY++LS      +TPTL N+   + QLSSCF
Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TVPD L GI+ +L   AM++K+ GG+G  +  +R  G +I G  G + GVI ++K+ N
Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKIRAAGGNIRGFKGVAGGVIRWMKLVN 374

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF + 
Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434

Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
             Q  N  W LF P+E+       L D YGKE+E  Y +    +   +    R +S   +
Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDI 490

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
            R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET        
Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550

Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL S++ L H      D  ++   + T VR LDNVI++N + 
Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYP 607

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  A+ +NH +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA
Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761
           +E+G+Y  F+GS W  G + I                R    P W  L  +V T GMRN+
Sbjct: 668 KEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + I G +   DP                V+  F + E K       AM+
Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +            + D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E 
Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828


>gi|168184458|ref|ZP_02619122.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|237796250|ref|YP_002863802.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum Ba4 str. 657]
 gi|182672445|gb|EDT84406.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|229261891|gb|ACQ52924.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 763

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 266/814 (32%), Positives = 413/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  + 
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469

Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                    CNL SINL      ++   ++ +  I   +R+LDN
Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKISWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FKGS W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IESSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R+RS
Sbjct: 719 LYITPEIKAKEILNMYMESWRQGVKTIYYVRNRS 752


>gi|229827461|ref|ZP_04453530.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
 gi|229788399|gb|EEP24513.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
          Length = 763

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 350/662 (52%), Gaps = 90/662 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           LA  +K ERDF F Y G+++L DRY +H +NG  +E+PQ  FM +AM LA  E +K   A
Sbjct: 146 LAEYIKPERDFLFNYEGVKLLADRYLVHGVNGEVMELPQERFMAIAMHLASVEEDKVYYA 205

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
             FY+LLS      +TPTL N+GT   QLSSCF++TV D+L+ I+    + + ++K+ G 
Sbjct: 206 KAFYDLLSKLKMTVATPTLANAGTTFNQLSSCFISTVSDNLWSIYDVNSKFSKVSKHGGA 265

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           LG     VR LG+ I G N  S GVIP++++ NDTAVAV+Q G+RKG     L+ WH D+
Sbjct: 266 LGIYLGKVRSLGSDIRGYNNASGGVIPWVRLYNDTAVAVDQLGRRKGGASITLDIWHKDL 325

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLY 514
            EF+DLR N GDDRR+ HD+  A  IPD+FM+R+     ++LF P EV       L D Y
Sbjct: 326 YEFIDLRTNNGDDRRKAHDIFPAISIPDIFMERLINRQEFSLFDPHEVEKLMGFSLEDYY 385

Query: 515 GK-----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            K     EF   Y+  E      +I V     A+ + +K++    ETG P+I F+D  N 
Sbjct: 386 DKDEKHKEFSERYKLCENDNRLTKITV----PALDIMKKIMKSAVETGTPFIFFRDTVNR 441

Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLGSIN 606
            +P  H G+++ SNLC EI  N S                       S +   CNL S+N
Sbjct: 442 ANPNSHAGMIYGSNLCHEIAQNMSETKYVSEEIITENGETKIVTTVKSGDMVTCNLNSVN 501

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L           ++L   +   +R+LDNVI +N   +  AK ++  +RAIGLG+ G+   
Sbjct: 502 L------GNVTLEELKENVPLQIRMLDNVITLNMFPVADAKVTSLKYRAIGLGVSGYHHY 555

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    I + + + +E AD   E I+++AI AS+ELA+E+GAY+ F+GS W  G +  D  
Sbjct: 556 LAKNAIAWENEKHIEEADRLFEEIAYNAIKASMELAKEKGAYAEFEGSKWQTGEY-FDER 614

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G ++E              W ELKK V   G+RN   MA+APT + +NI G +  IDP +
Sbjct: 615 GYVSE-------------RWQELKKDVMKYGLRNGYLMAVAPTGSTSNIAGTTAGIDPIF 661

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           +  +V+    G FT   +    EL     W                            + 
Sbjct: 662 KKFFVEEK-KGSFTPKTA---PELNDETFW---------------------------YYK 690

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A  I+ +W I + + RQ+ IDQAQS NLY+  E   K +  +Y +A+  G+KT YY+R+
Sbjct: 691 EAHYINQLWSIRACAARQRHIDQAQSFNLYITPEVKAKDILDMYVEAYKAGIKTIYYVRN 750

Query: 906 RS 907
           RS
Sbjct: 751 RS 752


>gi|51891460|ref|YP_074151.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855149|dbj|BAD39307.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 782

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 278/820 (33%), Positives = 414/820 (50%), Gaps = 103/820 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
           VR AQ       P   +L +++D+   ++     L  +V  AC  +    +   ++E   
Sbjct: 23  VRPAQ-------PYQGELNMLLDE--RVNVPEIDLTELVVSACRSIYPERASEFIAELRP 73

Query: 188 NMY---DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV-YKKPQKA 243
            ++   D   + DL  A + + +T +E EP++  V AR  L+KL  E      Y +P   
Sbjct: 74  LLHATTDRSQQMDL-AARLAAEKTSVE-EPDWQYVAARLYLQKLYGEAARNRGYHQPGYG 131

Query: 244 THHEMQCLYPEYFCRYIEEG--VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
             +E   L  +      E G  V    + E+  + ++  L   ++ ERD  F Y+GL  L
Sbjct: 132 DFYE---LVRQLHAMGDEAGNRVYGAYMIEAYSEEEIRELGRYIRPERDELFTYVGLLHL 188

Query: 302 YDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            DRY +   +G  +E+PQ  +M +AM LA  E+++   A  FY++LS      +TPT  N
Sbjct: 189 ADRYLIKGFHGEILELPQERYMHIAMHLASVESDRVTWAKRFYDVLSRQEMTVATPTFRN 248

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           + T  PQLSSCF+ TV D L  I+   Q  A ++K+ GG+G     +R  G+ I G  G 
Sbjct: 249 AATPLPQLSSCFIDTVDDSLQSIYDTNQSFAQVSKHGGGMGIYIGKLRARGSAIRGRKGA 308

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + GVIP+++  NDTAVAV+Q G RKGAV  +L+ WH ++ EFL L+ N GDDR R HD+ 
Sbjct: 309 AAGVIPWVRNYNDTAVAVDQLGARKGAVSIWLDVWHKEIFEFLALKLNNGDDRMRAHDIF 368

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYE--NYERQADRGE 533
               +PD FM+ V Q+A W LF P EV       L D +G+E+E  Y        AD+ +
Sbjct: 369 PGVCVPDAFMRAVEQDADWHLFCPHEVRTEMGFSLEDAWGEEWERRYRLCVEAAHADKLD 428

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V R   A  + + ML   +ETG P++ F+D  N  +P +H G+V+ SNLCTEI  N S
Sbjct: 429 ATVVR---ARQVAKAMLKSQYETGGPFLFFRDTVNRLNPNKHAGMVYCSNLCTEIAQNQS 485

Query: 594 S----EET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                E+T                VCNL SINL     +     +K+A  +  A+R+LDN
Sbjct: 486 PTRLIEKTDDGEVITYRWQPGDFVVCNLASINL-----SKVHTEEKIAEVVPLAIRMLDN 540

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID+N + + +AK +N  +RAIGLG+ G+   L  L I + S + +  ADE  E ++++A
Sbjct: 541 VIDLNFYPVPQAKITNKKYRAIGLGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYA 600

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S+ELA E+G Y   KGS W+ G +               A+       W  L+++  
Sbjct: 601 VKTSIELAAEKGCYPLCKGSDWETGEY--------------FALRGYESDRWQALRRQAA 646

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +G+RN+  +AIAPT++ + +CG + S+DP Y  +Y                 NE K+  
Sbjct: 647 EVGLRNAYLLAIAPTSSTSLLCGTTASVDPIYDRVY-----------------NEGKKDQ 689

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +   A                 +       +  A +ID  W I +A  RQ+ IDQ+QS N
Sbjct: 690 VIPLAAPG--------------LSPKTYLYYKPAHQIDQTWSIRAAGVRQRHIDQSQSFN 735

Query: 875 LYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRSATSVE 912
           LY+  P  K  DF  +Y QAW  GLKT YY+RSRS    E
Sbjct: 736 LYI-RPDIKGRDFLNLYMQAWKNGLKTVYYVRSRSLEVTE 774


>gi|260912587|ref|ZP_05919118.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633299|gb|EEX51458.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 839

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 293/921 (31%), Positives = 442/921 (47%), Gaps = 139/921 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG +  FD  KI+ AI K+F++         IR  D+   + +  +T   + N   
Sbjct: 3   ITKRNGSMAPFDREKIATAIKKSFISTGRTIVEDEIR--DVAIAVEQVIITNPAKQN--- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA---AQSHSKSDAPIAPKLKI 147
               +E IQD+VE SLMQ G +   + Y+L+R +R++ R      +++     IAP LK 
Sbjct: 58  ----VECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNKIANTLQQPEIAPALK- 112

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFSS 206
               G    F  +            L  +++   L+E +       ++  D  +ALI ++
Sbjct: 113 ----GIAADFEPE------------LYPIAA---LAEKFMGFVKADMNGRDKLSALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRR-----EVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             L   E PN+  + AR L  +L+R     E    +    QK  H   Q LY  Y     
Sbjct: 154 VELTSAEAPNWEFIAARLLSYRLQRDLEAFEQAEDIQSFAQKVRHLASQNLYGTY----- 208

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
                   + E+  D +L   A+ +  ER+    Y GL +L  RY +     + +E  Q 
Sbjct: 209 --------IAEAYTDGELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQE 260

Query: 320 FFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +A+ LA+ E E     V +FY++LS      +TPTL N+     QLSSCF+ TVPD
Sbjct: 261 MFLGIALHLAMNEGENRLHWVRKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPD 320

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV
Sbjct: 321 SLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAV 380

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V Q  N
Sbjct: 381 DQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMVQQDLN 440

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W +F P+EV       L D YG E+E  Y   E  AD+   +  R ++   + R +L 
Sbjct: 441 QEWHMFCPNEVLTTRGYSLEDFYGSEWEEKYR--ECVADKRLSR--RTMTLKDVIRLVLR 496

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------- 598
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N    E               
Sbjct: 497 SAVETGTPFTFNRDIVNRANPNAHNGIIYCSNLCTEIAQNMQPIEEVSNEVVTKDGDTVV 556

Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S++L      N+     L   + T VR LDNVID+N + +  A+ 
Sbjct: 557 VRTVKPGDFVVCNLASLSLGNLPLENE---AYLNDVVATVVRALDNVIDLNFYPVPYAQI 613

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +NH +R+IGLG+ G+  AL L  I + S + ++  D+  E I+  AI AS  LA+E+G+Y
Sbjct: 614 TNHRYRSIGLGVSGYHHALALRGINWESEDHLQFVDQVFERINRAAIEASSALAKEKGSY 673

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIA 767
           + F+GS W  G +                  R    P W +  +RVK  GMRN+  +AIA
Sbjct: 674 ACFEGSDWQTGAY---------------FEKRNYDSPQWQQTAQRVKVQGMRNAYLLAIA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + +   +  +DP  Q  +++         V       L  R  W           
Sbjct: 719 PTSSTSIVAATTAGLDPVMQRFFLEEKKGAMLPRV----APALSDRTFW----------- 763

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++  A++ +  W + +A  RQ+ IDQAQS+NLY+ +  + ++L 
Sbjct: 764 ----------------LYKGAYQTNQAWSMRAAGIRQRHIDQAQSVNLYITNNYTMRQLL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWQSGVKTIYYVRSKS 828


>gi|237710422|ref|ZP_04540903.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
 gi|229455144|gb|EEO60865.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
          Length = 839

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 306/929 (32%), Positives = 461/929 (49%), Gaps = 151/929 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + +              K +T++ V  ++  ++
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44

Query: 89  SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138
             L +H       +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S       D
Sbjct: 45  VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197
             I+  LK +  D     F+ K   + +               L+E + +     ++  +
Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144

Query: 198 LETALIFSSRTLIEKE-PNYAKVTAR---FLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
              AL+ ++  L  +E P++  + AR   FLL K          K  ++A    +   Y 
Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFLLTK----------KLTEQAEAAGIFSFYD 194

Query: 254 EYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           +   RY+ +EG+    +  S    ++   A  +  ERD  F Y GL +L  RY +     
Sbjct: 195 K--LRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSH 252

Query: 313 R-IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             IE  Q  ++ +A+ LA+ E +   + V+ FY++LS      +TPTL N+   + QLSS
Sbjct: 253 EPIESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSS 312

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TVPD L GI+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+
Sbjct: 313 CFIDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKL 372

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF 
Sbjct: 373 VNDTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFW 432

Query: 491 KRVTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           +   Q  N  W LF P+E+       L D YGKE+E  Y +    +   +    R +S  
Sbjct: 433 RMAKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIK 488

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------ 597
            + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET      
Sbjct: 489 DIVRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEIC 548

Query: 598 -----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
                             VCNL S++ L H      D  ++   + T VR LDNVI++N 
Sbjct: 549 TEDGDTVVVKTIRSGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNF 605

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + I  A+ +NH +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS E
Sbjct: 606 YPIPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSE 665

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMR 759
           LA+E+G+Y  F+GS W  G + I                R    P W  L  +V T GMR
Sbjct: 666 LAKEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMR 710

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+  +AIAPT++ + I G +   DP                V+  F + E K       A
Sbjct: 711 NAYLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------A 748

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
           M+  +            + D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +
Sbjct: 749 MLPRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITN 799

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           E + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 800 EFTLRQVLNLYLLAWECGVKTVYYVRSKS 828


>gi|297530898|ref|YP_003672173.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. C56-T3]
 gi|297254150|gb|ADI27596.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. C56-T3]
          Length = 785

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 267/806 (33%), Positives = 404/806 (50%), Gaps = 100/806 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL----- 198
           K+ I+ D G  +SF+ +    ++ +A +G      ++ L E  + ++  LS  +      
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGF----GRLSLDEYVERVWQLLSRKESVTVEQ 86

Query: 199 --ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
             +TA++     + E EP++  V AR  L +L        Y++  +   ++ +  Y +++
Sbjct: 87  LHQTAILEGLSYIDEDEPDWTFVCARLYLRQL--------YREAARQRGYDERERYGDFY 138

Query: 257 CRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
              +   E+GV +  L E     ++  +   L  E+D  F Y+GL+ L DRY       R
Sbjct: 139 SLLVALTEQGVYSPFLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERR 198

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           + E+PQ  F+ +AM L   E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 199 LYELPQERFLVIAMTLMANEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSS 258

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K 
Sbjct: 259 CFVDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQ 318

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM
Sbjct: 319 LNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAV 543
           ++V Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+
Sbjct: 379 EQVEQRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAI 437

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S          
Sbjct: 438 EVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVK 497

Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL SINL     +       LA  I   +R+LDNVID+N   + 
Sbjct: 498 DGMIIIEKIPGDFVVCNLSSINLARAVTDG-----VLARLIPIQMRMLDNVIDLNNIPVL 552

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E
Sbjct: 553 QAGLTNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKE 612

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y +F GS W  G +            +         L WD LK+ V   GMRN   M
Sbjct: 613 KGSYPAFPGSDWQTGAY-----------FERRGYESHGELDWDRLKQDVARYGMRNGYIM 661

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP A+ + I G + SIDP +  +Y +        V     V +L ++  W        
Sbjct: 662 AIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNEQTTW-------- 709

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                               + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K
Sbjct: 710 -------------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAK 750

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +L  ++  AW  GLKTTYY+RS S T
Sbjct: 751 ELLDLHLTAWKSGLKTTYYVRSTSGT 776


>gi|237726930|ref|ZP_04557411.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           D4]
 gi|229433786|gb|EEO43863.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           dorei 5_1_36/D4]
          Length = 839

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 303/927 (32%), Positives = 461/927 (49%), Gaps = 147/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + +              K +T++ V  ++  ++
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQ--------------KEITDEAVYTIV--DE 44

Query: 89  SALIVH-------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSD 138
             L +H       +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S       D
Sbjct: 45  VELFLHQNEANRSVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGD 104

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESD 197
             I+  LK +  D     F+ K   + +               L+E + +     ++  +
Sbjct: 105 DTISNILKEIQKD-----FSGKEYSLTL---------------LAEKFTSFCKPDMTPGE 144

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY- 255
              AL+ ++  L  +E P++  + AR L  +L +++          A   E   ++  Y 
Sbjct: 145 RLAALVKAAVELTTQETPDWEFIAARLLNFRLTKKL----------AEQAEAAGIFSFYD 194

Query: 256 FCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
             RY+ +EG+    +  S    ++   A  +  ERD  F Y GL +L  RY +       
Sbjct: 195 KLRYLTDEGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEP 254

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           IE  Q  ++ +A+ LA+ E +   + V+ FY++LS      +TPTL N+   + QLSSCF
Sbjct: 255 IESVQEMYLGIALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCF 314

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TVPD L GI+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ N
Sbjct: 315 IDTVPDSLEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVN 374

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF + 
Sbjct: 375 DTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRM 434

Query: 493 VTQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
             Q  N  W LF P+E+       L D YGK++E  Y +    +   +    R +S   +
Sbjct: 435 AKQDLNQQWYLFCPNEIMTVKGYCLEDYYGKKWEQKYMDCVNDSRLSK----RCMSIKDI 490

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
            R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET        
Sbjct: 491 VRLVLRSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTE 550

Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL S++ L H      D  ++   + T VR LDNVI++N + 
Sbjct: 551 DGDTVVVKTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYP 607

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  A+ +NH +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA
Sbjct: 608 IPFAQITNHRYRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELA 667

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761
           +E+G+Y  F+GS W  G + I                R    P W  L  +V T GMRN+
Sbjct: 668 KEKGSYHYFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNA 712

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + I G +   DP                V+  F + E K       AM+
Sbjct: 713 YLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AML 750

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +            + D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E 
Sbjct: 751 PRVA---------PALSDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEF 801

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 802 TLRQVLNLYLLAWECGVKTIYYVRSKS 828


>gi|288928560|ref|ZP_06422407.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331394|gb|EFC69978.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 839

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 291/920 (31%), Positives = 451/920 (49%), Gaps = 137/920 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG +  FD  KI+ AI K+F++       R I V+D I ++       ++ H    
Sbjct: 3   ITKRNGSMAPFDREKIATAIKKSFIST-----GRPI-VEDEIHDVAIAVEQVIITHPAK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKLKI 147
             +++E IQD+VE SLMQ G +   + Y+L+R +R++ R      +++   A IAP LK 
Sbjct: 56  --LNVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNRIANTLQQAEIAPVLK- 112

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFSS 206
               G    F  +            L  +++   L+E +       ++  D  +ALI ++
Sbjct: 113 ----GIAADFEPE------------LYPIAA---LAEKFMGFVKADMNGRDKLSALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLT-----TVYKKPQKATHHEMQCLYPEYFCRYI 260
             L   E PN+  + AR L  +L+R++ T      +    QK  H   Q LY  Y     
Sbjct: 154 VELTSAEAPNWEFIAARLLSYRLQRDLETFEQAEDIQSFAQKVRHLASQNLYGAYIV--- 210

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
                     ++  + +L   A+ +  ER+    Y GL +L  RY +     + +E  Q 
Sbjct: 211 ----------DAYTENELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQE 260

Query: 320 FFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +A+ LA+ E E     V+ FY++LS      +TPTL N+     QLSSCF+ TVPD
Sbjct: 261 MFLGIALHLAMNEGENRLHWVKKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPD 320

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV
Sbjct: 321 SLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAV 380

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   Q  N
Sbjct: 381 DQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQQDLN 440

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W +F P+EV       L D YG+ +E  Y  +E  AD+   +  R ++   + R +L 
Sbjct: 441 QDWHMFCPNEVLTTRGYSLEDFYGEAWEEKY--HECVADKRLSR--RTMTIKDVIRLVLR 496

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------- 598
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N  + E               
Sbjct: 497 SAVETGTPFTFNRDIVNRANPNGHNGIIYCSNLCTEIAQNMKAIEEVSNEVLTKDGDTVV 556

Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S++L      N+   + + +T+   VR LDNVID+N + +  A+ 
Sbjct: 557 VRTVKPGDFVVCNLASLSLGNLPLENETYLNDIVATV---VRALDNVIDLNFYPVPYAQI 613

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +NH +R+IGLG+ G+  AL L  I + S E ++  D+  E I+  AI AS  LA+E+GAY
Sbjct: 614 TNHRYRSIGLGVSGYHHALALRGIKWESEEHLQFVDQVFERINRAAIEASSSLAKEKGAY 673

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F+GS W  G +            D+   N      W +  +RVK  GMRN+  +AIAP
Sbjct: 674 AYFEGSDWQTGAY-----------FDKRNYNSPQ---WQQTAQRVKAQGMRNAYLLAIAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + +   +  +DP  Q  +++         V       L  R  W            
Sbjct: 720 TSSTSIVAATTAGLDPVMQRFFLEEKKGAMLPRV----APALSDRTFW------------ 763

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                          ++  A++ +  W + ++  RQ+ IDQAQS+NLY+ +  + ++L  
Sbjct: 764 ---------------LYKGAYQTNQAWSMRASGIRQRHIDQAQSVNLYITNNYTMRQLLD 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 809 LYLLAWQSGVKTIYYVRSKS 828


>gi|168179223|ref|ZP_02613887.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669564|gb|EDT81540.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
          Length = 763

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 265/814 (32%), Positives = 413/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  + 
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469

Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                    CNL SINL      ++   ++ +  I   +R+LDN
Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FKGS W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|150005610|ref|YP_001300354.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           vulgatus ATCC 8482]
 gi|254884473|ref|ZP_05257183.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294778580|ref|ZP_06744002.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|319640835|ref|ZP_07995548.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
 gi|149934034|gb|ABR40732.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           vulgatus ATCC 8482]
 gi|254837266|gb|EET17575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294447529|gb|EFG16107.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|317387647|gb|EFV68513.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
          Length = 839

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 302/920 (32%), Positives = 458/920 (49%), Gaps = 133/920 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHN 87
           +Q+IKRNG   S+D  KI+ AI K+F++ + +    ++  + D ++    Q      + N
Sbjct: 1   MQIIKRNGTTESYDREKIAVAIRKSFISTQKEITDEAVYTIVDEVEQFLHQN-----EAN 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPK 144
           +S     +E IQD+VE SLM+ G +   + Y+LYR +R++ R   S       D  IA  
Sbjct: 56  RS-----VERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKVLSQIITGTGDDTIANI 110

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALI 203
           LK +  D     F+ K   +                 L+E + +     ++  +   AL+
Sbjct: 111 LKEIQKD-----FSGKEYSLTF---------------LAEKFTSFCKPDMTSGERLAALV 150

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-E 261
            ++  L  +E P++  + AR L  +L +       K  ++A    +   Y +   RY+ +
Sbjct: 151 KAAVELTTQETPDWEFIAARLLNFRLTK-------KLTEQAEAAGIFSFYDK--LRYLTD 201

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAF 320
           EG+    +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  
Sbjct: 202 EGLYGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEM 261

Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           ++ +A+ LA+ E +   + V+ FY++LS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 262 YLGIALHLAMPEKQNRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDS 321

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+
Sbjct: 322 LEGIYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 381

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNA 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF  M +   N 
Sbjct: 382 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKRDLNQ 441

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W LF P+E+       L D YG+E+E  Y +    +   +    R +S   + R +L  
Sbjct: 442 QWHLFCPNEIMTVKGYCLEDYYGEEWEQRYMDCVNDSRLSK----RSMSIKDIVRLILRS 497

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597
             ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET               
Sbjct: 498 AVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVV 557

Query: 598 --------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                    VCNL S++ L H      D  ++   + T VR LDNVI++N + I  A+ +
Sbjct: 558 KTIRPGDFVVCNLASLS-LGHLPLE--DEKQMKEKVATVVRALDNVIELNFYPIPFAQIT 614

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           NH +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+GAY 
Sbjct: 615 NHRYRSIGLGVSGYHHALAVRGIRWESEEHLSFMDKVFERINYAAIAASSELAKEKGAYH 674

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAP 768
            F+GS W  G + I                R    P W  L  +V T GMRN+  +AIAP
Sbjct: 675 YFEGSDWQTGAYFI---------------KRGYNSPEWKALAVKVSTQGMRNAYLLAIAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +   DP                V+  F + E K       AM+  +    
Sbjct: 720 TSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA--- 754

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                   + D    I+ +A+  D  W I +A  RQ  IDQAQSLNLY+ +E + +++  
Sbjct: 755 ------PALSDKTYWIYKSAYLTDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLN 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 809 LYLLAWECGVKTVYYVRSKS 828


>gi|187778604|ref|ZP_02995077.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
 gi|187772229|gb|EDU36031.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
          Length = 763

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 267/819 (32%), Positives = 417/819 (50%), Gaps = 125/819 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   +G       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRNGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  L+  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIENYSDEEIKELSKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A  FY++LS      +TPTL N+G
Sbjct: 170 YLIKGHNGEVLELPQERFMTIAMHLAIPEGDKKIFYAKGFYDILSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++TV D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGASITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDL---------HDLYGKEFEIAYENYERQADRGE 533
             IPDLFM+R+ +   W+LF P  V  +          D+  KEF   Y   E+      
Sbjct: 350 VSIPDLFMERLEKREQWSLFDPYMVEKIMDYKLEDYFDDVDCKEFTKRYLECEKN----- 404

Query: 534 IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           I + R  + A+ + +K++    ETG P+I F+D  NI +P +H G+++SSNLC EI  N 
Sbjct: 405 INIPRNTVPALDIMKKLMKSAVETGTPFIFFRDTVNIANPNKHKGMIYSSNLCHEIAQNM 464

Query: 593 SSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           S  E                          CNL SINL      ++ + +  +  I   +
Sbjct: 465 SESELVEEEIIDENGYSEVVQRIKAGDMVTCNLNSINL------SKVEKEDFSKCIPLQI 518

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVI +N   +++A+ ++  +RAIGLG  G+   L    I + S E +++ADE  E 
Sbjct: 519 RMLDNVISLNKLPVKEARVTSDKYRAIGLGTSGYHHFLVNNKIRWESDEHIKVADEIYEE 578

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++ AI AS+ELA+E+G+Y +FKGS W+ G +  +  G  +E              W +L
Sbjct: 579 IAYTAIKASMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------KWQQL 624

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  +K  GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE
Sbjct: 625 QSDIKRYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE 683

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W                            +  A  ID  W I++ + RQK IDQ
Sbjct: 684 ---ENFW---------------------------YYKEAHTIDQQWSIKACAARQKHIDQ 713

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AQS NLY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 714 AQSFNLYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|283768722|ref|ZP_06341633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
 gi|283104508|gb|EFC05881.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
          Length = 836

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 304/924 (32%), Positives = 453/924 (49%), Gaps = 151/924 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI--IKNLTEQTVTRLLQHNK 88
           + KRNG    FD +KI  AI K+F +++       I  +D+  I +L EQ +      N+
Sbjct: 6   ITKRNGQQVPFDSTKIQMAIRKSFASLQA-----DISEEDLASILDLLEQKII-----NR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             L   +E IQD+VE SLM+ G+ ++ ++Y+LYR+    VR  Q   +++      L++M
Sbjct: 56  EKL--DVEFIQDKVEQSLMEKGYFEVAKKYILYRQ----VRTIQRQERNEL-----LELM 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS---ETYKNMYDGLSESDLETALIFS 205
             +G             +EE    LQ     + L    E Y+N   G  + D  + L+ S
Sbjct: 105 AIEG-------------LEEHLLSLQKTYPNLSLKRLKERYENTITG--QEDRLSLLVRS 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYF 256
           +  L  KE P + KV  R L  +L  ++        + + Y+K Q  T    + LY +Y 
Sbjct: 150 AAELTSKEEPTWEKVAGRLLAFQLSLKLKQAEDSLGIHSFYEKLQYLTQ---EGLYGDY- 205

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-E 315
              I +G     + E+    D         +  D+ F Y GL +L +RY +H     I E
Sbjct: 206 ---ILKGYHQEEIEEAYHFID---------FSHDYRFTYAGLDLLANRYLIHSRQHVILE 253

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            PQ  ++ +A+ LALKE +     V+ FY++L+      +TPTL N+   + QLSSCF+ 
Sbjct: 254 SPQEMYLGIALHLALKEKKYRMEWVKKFYDMLARHEVTMATPTLSNARKPYHQLSSCFID 313

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPD L GI+ ++   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDT
Sbjct: 314 TVPDSLDGIYQSIANFADVSKFGGGMGMYLGKVRSRGGMIRGFEGASGGVIRWIRVINDT 373

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K+V 
Sbjct: 374 AVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKKVK 433

Query: 495 Q--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  N  W    P ++       L D YG+E+E  YE  E   D    K    I  V   R
Sbjct: 434 EDINQDWYFMDPHDIFVVKGYHLEDSYGEEWERKYE--ECIQDHRISKRVMSIKEVV--R 489

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            +L  + ETG P+  ++D  N  +P +H G+++ SNLCTEI  N S              
Sbjct: 490 LILKSIVETGTPFAFYRDAVNRANPNKHAGIIYCSNLCTEIAQNMSEACIESRTIETRDG 549

Query: 596 -----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL S+ L     N+  D +++ ST   AVR LDNVID+N + + 
Sbjct: 550 ETVIVQTQKPGDFVVCNLASLCLGNINVNDIADLERVTST---AVRALDNVIDLNFYPLV 606

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            AK +N  +RAIGLG+ G+   L    I + S E ++  D   E I++  I AS ELA+E
Sbjct: 607 NAKITNQNYRAIGLGVSGYHHMLAKNRIQWESEEHLQFVDRVFEDIAYMTIRASHELAKE 666

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG+YS FKGS W+ G              D   + +     W +L+K ++  GMRN+  M
Sbjct: 667 RGSYSLFKGSDWENG--------------DYFRLRKYESERWLKLQKDIQKGGMRNAYVM 712

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT++ + + G +  +DP                V+N F + E K   L   A    L
Sbjct: 713 AIAPTSSTSILIGTTAGLDP----------------VLNRFFMEEKKGTMLPRTAPELSL 756

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           + +                 + +A  ID  + I +   RQ+ IDQ+QS NL++ +E    
Sbjct: 757 ETY---------------WYYKSAHTIDQNYSIRANGIRQRHIDQSQSFNLWITNEYKMS 801

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           +L  +   A+  G+KT YY RS++
Sbjct: 802 QLLKLLTLAYDCGVKTIYYTRSKA 825


>gi|169825013|ref|YP_001692624.1| ribonucleotide-diphosphate reductase subunit alpha [Finegoldia
           magna ATCC 29328]
 gi|167831818|dbj|BAG08734.1| ribonucleoside-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 29328]
          Length = 842

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 289/918 (31%), Positives = 468/918 (50%), Gaps = 126/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V G  A      Q+ ++++ +Q    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASV-GIYAE-----QNELESMAQQIENTIVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +          +D  +  + +  
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +I      +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266
           L+ KE PN+  + + F+   L++ +     KK +    +++Q    +   ++++E G+  
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +A
Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           G+V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F 
Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+S     +L D YG E+E  Y     +    E    R I    L R ++    ETG 
Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597
           P+   +D  N  +P +H G+++SSNLCTEI  N       S + ET              
Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISENIETEDGDDIIVTKTKPG 565

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R 
Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622

Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           IGLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS
Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +         ++RD       +   W+EL   +K  GMRN   MA+APT + + 
Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + ++DP                V++ + + E K                 G+I  +
Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753

Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
            R+   L      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY
Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW  G+K+ YY+RS+S
Sbjct: 814 VRAWEKGIKSIYYVRSKS 831


>gi|223983471|ref|ZP_03633657.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
 gi|223964643|gb|EEF68969.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
          Length = 841

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 297/919 (32%), Positives = 456/919 (49%), Gaps = 129/919 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+  V ++D  KISRA+  AF       AS    + ++ K      V   ++   
Sbjct: 1   MEIIKRDQSVQAYDRRKISRAVSAAF-------ASVGHPLPEMTKEAILDQVEVQIRGAA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E IQD VE +LM+   ++  R Y+LYR+E + +R              +L+ +
Sbjct: 54  ETAPVSVEQIQDWVEQALMRQNCYEEARHYILYRQEHARLRDQ----------IDQLRRI 103

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +++   ++L+    +    L  +  K+      K     +  S     LI +   
Sbjct: 104 IPDPEILA-TCRQLQRDFSQPAMSLDALIQKVQAFSKEK-----MKRSQQLDNLIRACVE 157

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKA 266
           L+ +E P++ K  ARF++ KLRR V        Q+     ++ L  +    Y+E +G+  
Sbjct: 158 LVSQEAPDWEKAAARFMMIKLRRSV-------SQRMEAQGIRTLAQKLL--YLEAQGLLN 208

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
           + L E     DL  L   +  ERD  F   GL++L  RY +  + G  +E+PQ  FM +A
Sbjct: 209 KDLSEHYSYNDLNRLEQAIDNERDQLFNASGLELLIKRYLIRDHQGEVLELPQEMFMGIA 268

Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           M LA+ E + + + A++ Y++LS      +TPTL N+     QL+SCF+  VPD L GI+
Sbjct: 269 MHLAIPEGKNRVEWAIKIYDVLSQLQVTMATPTLANARKPKAQLASCFIDVVPDSLKGIY 328

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +L   A ++K  GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G R
Sbjct: 329 KSLDSFAQISKQGGGMGLYFGKVRASGSDIRGFQGAAGGVLRWIRLVNDTAVAVDQLGVR 388

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLF 502
           +GAV  YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF  M + + +  W L 
Sbjct: 389 QGAVAVYLDCWHRDLPEFLQIRTNNGDDRMKAHDVFPAVCYPDLFWRMAKASLDQNWYLM 448

Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTMLFET 556
            P ++       L D  G+ +E  Y+  E  AD R E +V   I    L R +L    ET
Sbjct: 449 DPHQIQTVKGYALEDCTGELWEQRYQ--ECVADSRIEKRV---ILLKDLVRLILKSAAET 503

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P++  +D  N  +P  H GV++ SNLCTEI  N                       + 
Sbjct: 504 GTPFVFNRDLVNAMNPNGHRGVIYCSNLCTEIAQNIAPAGEIETRMTEIDGEMVIIEQAK 563

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           + E  VCNL S+NL      N  D ++L S I   VR LDNVID+N + + +A+++    
Sbjct: 564 AGEMVVCNLASLNL---GRLNTEDEEELRSVIEVTVRALDNVIDLNAYPLPQAQRTASRS 620

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG+ G    L    I + S E +  AD+  E I+++AI AS++LAQE+G Y+ F+G
Sbjct: 621 RAIGLGVSGLHHWLAKRSIFFESEEHLNAADKLFEAINYNAIRASLQLAQEKGRYADFEG 680

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +     G  ++              W  L K V   G+RN   +AIAPT++ +
Sbjct: 681 SDWQTGAY-FTKRGYTSDA-------------WQTLAKEVARYGLRNGWLLAIAPTSSTS 726

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP                ++N F + E K                 GSI  
Sbjct: 727 VIAGTSAGVDP----------------IMNKFFLEEKK-----------------GSI-- 751

Query: 834 IERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           I R+  +L +     +  A +ID  W++ +A  RQ+ IDQAQS+NLY+  + S + L  +
Sbjct: 752 IARVAPELNEKTYWYYKKAHQIDQTWVVRAAGVRQRHIDQAQSVNLYITTDYSLRDLLNL 811

Query: 889 YRQAWLMGLKTTYYLRSRS 907
              AW  G+KT YY+RS+S
Sbjct: 812 MILAWEKGVKTLYYVRSQS 830


>gi|313887772|ref|ZP_07821454.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846381|gb|EFR33760.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 842

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 297/922 (32%), Positives = 463/922 (50%), Gaps = 134/922 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+     FD  KI  AI KAF +V GK       V  +I          LL++  
Sbjct: 1   MKILKRDKREVDFDHLKIKNAIEKAFDSV-GKSY-----VDSVINAYALDIKETLLKNYD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
                 +E+IQD VE  L+     ++ + Y+LYR   S+ R      ++  +D  +   L
Sbjct: 55  PKNPPTVEEIQDLVELKLIDEKEIEVVKAYILYRNRHSEERQILDKFANYITDDKVLKIL 114

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +       +++ K+ E+  E      +    K    + Y      LSE      +I +
Sbjct: 115 KFVRK-----TYDPKKYEL--ENLYKKFESFVKKDQSQDAY------LSE------IIKA 155

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL-YPEYFCRYIEEG 263
           +  L +K+ P +  + A FL   L +++         KA   E +   + E      E+G
Sbjct: 156 ASELTDKDAPRWEFIAALFLNYDLEKKI---------KANLEEFKINNFYEKIVFLTEKG 206

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
           +  + + E+    D++ L + +   R+    Y GL +L  RY +  +  R +E  Q  FM
Sbjct: 207 LYGKYILENYSKEDILELEDYIDNSRNRLLNYSGLDLLIKRYVIRSHDGRFVESIQEMFM 266

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA+ E  +   A +FY++ SS     +TPT+ N+   + QLSSCF+ TVPD L G
Sbjct: 267 GIAMHLAIPEKNRIYWAKKFYDIYSSLKVTVATPTMSNARKPYNQLSSCFIDTVPDTLKG 326

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G
Sbjct: 327 IYRSIDNFAQISKHGGGMGLYFGKVRATGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLG 386

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   P+LF +   +  NA W 
Sbjct: 387 VRQGSVACYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAISYPNLFFELAEKDINATWY 446

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P EV       L D YGKE+E  Y    R+    E    R++S   L R ++  L E
Sbjct: 447 MFDPHEVLAKKGYSLEDFYGKEWEEKY----RECIEDESISRREMSVKDLVRLIIKSLTE 502

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+  ++D  N  +P +HVG+++SSNLCTEI  N S+ ET                  
Sbjct: 503 TGTPFAFYRDNVNEMNPNKHVGMIYSSNLCTEIMQNMSAIETLDTTIETEDGDEVIVTKT 562

Query: 598 -----AVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                 VCNL S+ L     N   + DK L   + T VR LDNVID+N + I  AK +N 
Sbjct: 563 KPGDFVVCNLASLVL----GNIDLEDDKELKDIVATTVRALDNVIDLNYYPIPYAKVTNR 618

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSS 710
            +R+IGLG  G+  AL    + ++  E  ++ AD+  E I+FHA++AS+E+A+E+G+Y  
Sbjct: 619 KYRSIGLGTSGYHHALVKAGMAFSDIEDHLKWADDLYERINFHAVTASMEIAKEKGSYDF 678

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS W+ G +         ++RD           W++L++ VK  G+RN   MAIAPT 
Sbjct: 679 FEGSDWENGNY--------FDLRD------YKDAKWNKLREEVKANGLRNGYIMAIAPTG 724

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I   S  +DP                ++N + + E K                 GS
Sbjct: 725 STSIIAATSAGVDP----------------IMNRYFLEEKK-----------------GS 751

Query: 831 IGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
           I  + R+  DL      ++  A E+D  ++IE+A+ RQ+ IDQAQS+N Y+  + + +K+
Sbjct: 752 I--LPRVAPDLTPQSFWLYENAHELDQNFVIEAAAIRQRHIDQAQSINFYITTDFTMRKI 809

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             +Y +A    LK+ YY+RS+S
Sbjct: 810 LNLYIKAAKEKLKSVYYVRSKS 831


>gi|226950224|ref|YP_002805315.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843054|gb|ACO85720.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 763

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 264/814 (32%), Positives = 412/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+     +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYGKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  + 
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHRGMIYSSNLCHEIAQNMSESQL 469

Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                    CNL SINL      ++   ++ +  I   +R+LDN
Sbjct: 470 LEEEIIDENGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FKGS W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKGSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|302379637|ref|ZP_07268122.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312544|gb|EFK94540.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 842

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 288/918 (31%), Positives = 468/918 (50%), Gaps = 126/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V G  A      Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASV-GIYAE-----QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +          +D  +  + +  
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +I      +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVDLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266
           L+ KE PN+  + + F+   L++ +     KK +    +++Q    +   ++++E G+  
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +A
Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           G+V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F 
Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+S     +L D YG E+E  Y     +    E    R I    L R ++    ETG 
Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597
           P+   +D  N  +P +H G+++SSNLCTEI  N       S + ET              
Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R 
Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622

Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           IGLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS
Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +         ++RD       +   W+EL   +K  GMRN   MA+APT + + 
Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + ++DP                V++ + + E K                 G+I  +
Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753

Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
            R+   L      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY
Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW  G+K+ YY+RS+S
Sbjct: 814 VRAWEKGIKSIYYVRSKS 831


>gi|167756570|ref|ZP_02428697.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
 gi|167702745|gb|EDS17324.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
          Length = 846

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 290/924 (31%), Positives = 460/924 (49%), Gaps = 139/924 (15%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR---VQDIIKNLTEQTVTR 82
           +K + + KRNG    +D +KI  AI KAF ++     S +I+   ++ +I ++ +  +  
Sbjct: 9   VKKMLIQKRNGLFQDYDNNKIETAIKKAFCSL-----SETIKDDELKKMIADIEKHIIAD 63

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +           +E IQD VE +LM+ G+ ++ + Y+LYR         Q H++    I 
Sbjct: 64  M----------SVEAIQDLVEETLMKHGYLQVAKAYILYR---------QKHTEQRLIID 104

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETA 201
             L ++ D       N K++ + + +     Q+  S  +L   +K  Y +G+S  +    
Sbjct: 105 ELLALLGDQ------NLKKVLLKIHKDYP--QEEYSLQLLLVKFKTFYKEGMSHFEALKM 156

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           L+ +S  LI KE P +  ++ARFL   + ++V        QK         Y E      
Sbjct: 157 LMKASVELISKEAPKWEMISARFLTYDVNQQV-------DQKMNTAGRYTFY-ERINYLA 208

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           ++G   + + ES    ++  L   +   R+  F Y GL+++  RY +  N  R  IE PQ
Sbjct: 209 QQGYYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQ-NHDREIIEKPQ 267

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             FM +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D
Sbjct: 268 EMFMSIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDD 327

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV
Sbjct: 328 SLAGIYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAV 387

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +  
Sbjct: 388 DQLGVRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLE 447

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           A W +  P E+ +     L D YG+E+E  Y  YE   D    K  R ++   + R ++ 
Sbjct: 448 ASWYMMCPHEIHEVKGYYLEDCYGEEWERKY--YECVEDDRIPK--RVMTVKEIVRLIIK 503

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
            L ETG P+   +D  N  +P  H G+++ SNLCTEI  N  + E               
Sbjct: 504 SLVETGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETII 563

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S+  L H   +  + D+L   I   +R LDNVID+N + I  AK 
Sbjct: 564 VEKTKPGDFVVCNLASLT-LGHL--DVLNDDELRHVISVVIRALDNVIDLNYYPIPFAKI 620

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+Y
Sbjct: 621 TNQKYRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSY 680

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S F GS ++ G + I                R     W  L+ ++K  G+RN   +AIAP
Sbjct: 681 SLFNGSDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAP 726

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G + ++DP                ++  + + E K                 
Sbjct: 727 TSSTSIIAGTTAAVDP----------------IMKKYFMEEKK----------------- 753

Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           GS+  I R+  DL      ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +
Sbjct: 754 GSM--ITRVAPDLDSETFWLYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFR 811

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           KL  +Y +AW  G+KT YY+RS+S
Sbjct: 812 KLLNLYIKAWEYGVKTLYYVRSQS 835


>gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 744

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/736 (33%), Positives = 393/736 (53%), Gaps = 48/736 (6%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE---- 231
           V   I+      ++Y G++  +L+      + ++I + P+YA + AR  +  L +E    
Sbjct: 34  VDPSIIALRVITDLYSGVTTVELDNLASEIAASMINQHPDYAILAARIAISNLHKETKKT 93

Query: 232 ---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
              V+  +Y      T+  +  +  +Y+ + I+                   L + + Y+
Sbjct: 94  FSEVIADLYDAKNSITNKRLPIISEKYY-KIIQSNADK--------------LNSAIIYD 138

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF + Y   ++L   + L +NG  +E PQ   MRVA+ +   + +K   A+E YN LS 
Sbjct: 139 RDFNYSYTTYKMLETNHLLKLNGKVVERPQHMLMRVAIAIHDDDIDK---AIETYNFLSK 195

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F+    TL  + T   Q++S FL T+  D + GI   L+ +A+L  Y+G +G +   +
Sbjct: 196 QYFIYPAQTLDTACTVTQQMASSFLLTMSGDSIDGILDTLERSAVLCHYNGDIGFNVHCI 255

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R     I GT G S G++P LK  N +   V++  K    V  YLE WH D+ EFLDL+K
Sbjct: 256 RAKNTPIRGTGGVSNGLVPMLKAYNTSIATVSR--KNTEQVTVYLEPWHADIFEFLDLKK 313

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           N G+++ R  DM  A W PDLFM+R+  +  W+L  P E  DL + YG+EFE+ Y  YE+
Sbjct: 314 NIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSLMCPHECPDLIEAYGEEFELLYTRYEK 373

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +        FRK I A  LW  ++   FETG P+I +KD CN ++  Q++G +  S   T
Sbjct: 374 EGR------FRKQIKARDLWLLIIQTQFETGTPYIVYKDHCNRKTNHQNLGTIKCSGFST 427

Query: 587 EITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   SSS+E A+CN  SI  N+        FD++KL   ++     LD +ID N + + 
Sbjct: 428 EIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFNKLKEIVKIVTYNLDKMIDANFYPLP 487

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + K S   HR+IG+G+ G   A  L+  P+ S EA ++  +  E + + A+ AS E+A +
Sbjct: 488 EIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEARKLNIQIFETLYYGALEASCEIAIK 547

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y S+KGS       PI S G+L    D      T    W+ LKK+++  G+RNS  +
Sbjct: 548 KGSYVSYKGS-------PI-SKGMLQ--YDMWNAKPTDLWDWNTLKKKIEEHGVRNSLLI 597

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A    A +A +   + S++P   N+YV   +S  F +V   L+ +L ++ LWDE + + +
Sbjct: 598 AQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQFRIVKPRLLRDLIEKKLWDENICNKI 657

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             +DGSI NIE IP++LK ++ TA+E+    + + A+ R  +IDQ+Q LN+++ +P  +K
Sbjct: 658 INNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDMAACRGPFIDQSQCLNVHMIDPL-EK 716

Query: 885 LDFIYRQAWLMGLKTT 900
           L  ++  AW  GLK++
Sbjct: 717 LTSMHFYAWENGLKSS 732


>gi|170758616|ref|YP_001788132.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405605|gb|ACA54016.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 763

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 263/814 (32%), Positives = 411/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKIIQNGKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKTKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TTFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE- 596
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  + 
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQL 469

Query: 597 ----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                    CNL SINL      ++   ++ +  I   +R+LDN
Sbjct: 470 LEEKIIDDNGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFSECIPLQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FK S W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|237733861|ref|ZP_04564342.1| ribonucleotide-diphosphate reductase subunit alpha [Mollicutes
           bacterium D7]
 gi|229382942|gb|EEO33033.1| ribonucleotide-diphosphate reductase subunit alpha [Coprobacillus
           sp. D7]
          Length = 838

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 290/924 (31%), Positives = 460/924 (49%), Gaps = 139/924 (15%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR---VQDIIKNLTEQTVTR 82
           +K + + KRNG    +D +KI  AI KAF ++     S +I+   ++ +I ++ +  +  
Sbjct: 1   MKKMLIQKRNGLFQDYDNNKIETAIKKAFCSL-----SETIKDDELKKMIADIEKHIIAD 55

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +           +E IQD VE +LM+ G+ ++ + Y+LYR         Q H++    I 
Sbjct: 56  M----------SVEAIQDLVEETLMKHGYLQVAKAYILYR---------QKHTEQRLIID 96

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETA 201
             L ++ D       N K++ + + +     Q+  S  +L   +K  Y +G+S  +    
Sbjct: 97  ELLALLGDQ------NLKKVLLKIHKDYP--QEEYSLQLLLVKFKTFYKEGMSHFEALKM 148

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           L+ +S  LI KE P +  ++ARFL   + ++V        QK         Y E      
Sbjct: 149 LMKASVELISKEAPKWEMISARFLTYDVNQQV-------DQKMNTAGRYTFY-ERINYLA 200

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           ++G   + + ES    ++  L   +   R+  F Y GL+++  RY +  N  R  IE PQ
Sbjct: 201 QQGYYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQ-NHDREIIEKPQ 259

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             FM +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D
Sbjct: 260 EMFMSIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDD 319

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV
Sbjct: 320 SLAGIYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAV 379

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +  
Sbjct: 380 DQLGVRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLE 439

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           A W +  P E+ +     L D YG+E+E  Y  YE   D    K  R ++   + R ++ 
Sbjct: 440 ASWYMMCPHEIHEVKGYYLEDCYGEEWERKY--YECVEDDRIPK--RVMTVKEIVRLIIK 495

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
            L ETG P+   +D  N  +P  H G+++ SNLCTEI  N  + E               
Sbjct: 496 SLVETGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETII 555

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S+  L H   +  + D+L   I   +R LDNVID+N + I  AK 
Sbjct: 556 VEKTKPGDFVVCNLASLT-LGHL--DVLNDDELRHVISVVIRALDNVIDLNYYPIPFAKI 612

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+Y
Sbjct: 613 TNQKYRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSY 672

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S F GS ++ G + I                R     W  L+ ++K  G+RN   +AIAP
Sbjct: 673 SLFNGSDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAP 718

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G + ++DP                ++  + + E K                 
Sbjct: 719 TSSTSIIAGTTAAVDP----------------IMKKYFMEEKK----------------- 745

Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           GS+  I R+  DL      ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +
Sbjct: 746 GSM--ITRVAPDLDSETFWLYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFR 803

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           KL  +Y +AW  G+KT YY+RS+S
Sbjct: 804 KLLNLYIKAWEYGVKTLYYVRSQS 827


>gi|320538425|ref|ZP_08038293.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
 gi|320144720|gb|EFW36468.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
          Length = 845

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 284/920 (30%), Positives = 452/920 (49%), Gaps = 127/920 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    ++  KI RAI  AF +V    AS    +  I+ +LT +    +   +K
Sbjct: 1   MEIIKRNGERRPYEAEKIGRAIRAAFDSVP---ASPHTDIGKIVDSLTMEIEGDIKDLSK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +V +E IQD VE +L++  ++   + ++LYR +R+  R A+   +   P      ++
Sbjct: 58  NGNLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVDRTKKRDARKTIEQSFPTIDVRSVL 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++     + +   L ++  +  S              +K   + +SE +    LI ++  
Sbjct: 118 LEVQNDFTEDEYNLNLLSHKFHS--------------FKK--NDMSERECLNLLIKAAVE 161

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCR-YIE 261
           L  +E P +  + +R L+     E+   + K+      +K ++ E   LY +Y  + Y +
Sbjct: 162 LTAQEAPRWELIASRLLMLSFTEELSVELEKRNIHSFYEKISYLEENGLYGDYIRKHYTK 221

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320
           E ++    +              +  ER+    Y  L +L  RY +   G   +E PQ  
Sbjct: 222 EELETAFSY--------------IDTERNKLLTYSSLDMLLRRYVIRTRGHIPLETPQEM 267

Query: 321 FMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+ +A+ LA+ E EK    V +FY++LS      +TPT+ N+   + QLSSCF+ TVPD 
Sbjct: 268 FLGIALHLAMLEKEKRMYWVKQFYDMLSKLQVTMATPTISNARKPYHQLSSCFIDTVPDS 327

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+
Sbjct: 328 LDGIYRSIDNFAKISKFGGGMGLYFGKVRAVGSPIRGFQGAAGGIIRWIKLANDTAVAVD 387

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R+G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF K V    NA
Sbjct: 388 QLGVRQGSVAVYLDIWHKDVPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKTVRDDINA 447

Query: 498 GWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W L  P E+       L D +G E+E  Y++  + +   +    R+I    L R +L  
Sbjct: 448 SWYLMCPHEILSVKGYSLEDYFGDEWEKRYKDCVQDSRISK----REIPIKELVRLILKS 503

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----SSSEET---------- 597
             ETG P+  ++D  N  +P  H G+++ SNLCTEI  N     S S+E           
Sbjct: 504 AVETGTPFAFYRDAANKTNPNGHKGMIYCSNLCTEIAQNMSPIQSQSQEIKTVDGETVVV 563

Query: 598 --------AVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                    VCNL S+ L     N +  D  +L   + + VR LDNVID+N + +  AK 
Sbjct: 564 TTTKPGDFVVCNLASLVL----GNIEVTDRKELQRIVYSVVRALDNVIDLNYYPVPYAKI 619

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L   +I + S E +   D+  E I+F AI AS+++A+E+G+Y
Sbjct: 620 TNGQYRAIGLGTSGYHHMLAKQNIAWESEEHLRFVDKVFEDINFAAIEASMQIAKEKGSY 679

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G +                 N TS   W  L+K V+T GMRN   +AIAP
Sbjct: 680 LYFEGSDWQTGAYFTKR-------------NYTSE-RWQALQKEVQTSGMRNGYLLAIAP 725

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +   DP  +  +++         V       L  +  W            
Sbjct: 726 TSSTSIIAGTTAGTDPVMKRYFLEEKKGALMPRV----APALSMKTFW------------ 769

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                          ++  A  ID  W + +A  RQ+ +DQAQS+NLY+  + + KK+  
Sbjct: 770 ---------------LYKNAHLIDQEWSMRAAGVRQRHVDQAQSVNLYITTDYTFKKVLG 814

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y +AW  G+K+ YY+RS+S
Sbjct: 815 LYLKAWEEGVKSIYYVRSQS 834


>gi|303234657|ref|ZP_07321286.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
 gi|302494222|gb|EFL53999.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
          Length = 842

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 287/918 (31%), Positives = 467/918 (50%), Gaps = 126/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD  KI  A+ KA+ +V G  A      Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRLKIELAMKKAYASV-GIYAE-----QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +          +D  +  + +  
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFEKF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +I      +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 105 ITDDDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266
           L+ KE PN+  + + F+   L++ +     KK +    +++Q    +   ++++E G+  
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--IQYDLQDFKSK--IKFLDERGLYG 209

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +A
Sbjct: 210 SYIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIA 269

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           G+V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F 
Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+S     +L D YG E+E  Y     +    E    R I    L R ++    ETG 
Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597
           P+   +D  N  +P +H G+++SSNLCTEI  N       S + ET              
Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R 
Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622

Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           IGLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS
Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +         ++RD       +   W+EL   +K  GMRN   MA+APT + + 
Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + ++DP                V++ + + E K                 G+I  +
Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753

Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
            R+   L      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY
Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW  G+K+ YY+RS+S
Sbjct: 814 VRAWEKGIKSIYYVRSKS 831


>gi|239826136|ref|YP_002948760.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           WCH70]
 gi|239806429|gb|ACS23494.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. WCH70]
          Length = 761

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 261/749 (34%), Positives = 378/749 (50%), Gaps = 82/749 (10%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D LS   +   LI    + I E EP +  V A   L+KL +E      K+          
Sbjct: 56  DTLSAEQITNYLILEGLSYISEAEPEWTFVCAHIYLQKLYKEAA----KQRGYDAKQRYG 111

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
            LY E     + +GV  R L ++    ++  L   +  ++D  F Y+GL+ L DRY    
Sbjct: 112 SLY-ELITTLVSKGVYDRSLLDNYSKEEINELGKLIDPDKDKLFTYIGLRTLADRYLARD 170

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP 366
            + +  E+PQ  F+ +AM L  KE +  +     E Y  LS+ +   +TPTL N+G  + 
Sbjct: 171 YDRNLYELPQERFLIIAMTLMAKEPKHRRFTFIQEAYWALSNLYMTVATPTLANAGKSYG 230

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP
Sbjct: 231 QLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIP 290

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++K  N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IP
Sbjct: 291 WMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIP 350

Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-FEIAYENYERQADRGEIKVFRKI 540
           DLFM++V +   W LF P EV       L D Y +E    ++     Q  + E     K+
Sbjct: 351 DLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDFYDEEKGSGSFREKYWQCVQEERLSKEKV 410

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
            A+ + + ++    E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S       
Sbjct: 411 PAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTVVEKQ 470

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +  VCNL SINL     +     D L   I   +R+LDNVID+N  
Sbjct: 471 YTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNNI 525

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +AK +N  +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI AS+EL
Sbjct: 526 PVLQAKFTNQKYRAVGLGTFGWHHLLALKGIRWESDEAVEYADKLYEKIAYLAIKASMEL 585

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +F GS W  G +            D+   +RT    WD LK++V   GMRN 
Sbjct: 586 AKEKGSYPAFPGSDWQTGAY-----------FDKRGYHRTEEFDWDALKEQVAKHGMRNG 634

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             MAIAP A+ + I G + SIDP +  +Y +        V     V +L     W     
Sbjct: 635 YVMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNAETTW----- 685

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  + +A+ ID  W I+  + RQ+ IDQA S N Y L+  
Sbjct: 686 ----------------------YYKSAYHIDQHWSIKQNAARQRHIDQAISFNFYVLNTI 723

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             K+L  ++  AW  GLKTTYY+RS S+T
Sbjct: 724 KAKELLDLHLTAWKSGLKTTYYVRSTSST 752


>gi|138894465|ref|YP_001124918.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265978|gb|ABO66173.1| Ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 785

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/812 (32%), Positives = 401/812 (49%), Gaps = 111/812 (13%)

Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL------- 198
           I++DD G   S + +    ++E+A +G   +S    L E  + ++  LS  +        
Sbjct: 33  IVVDDQGKEKSLSRREFAALIEQATAGFVRLS----LEEYEERVWQLLSRKEFVTVDQLY 88

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +TA++     + E+EP +  V AR  L  +        Y++  +   ++ +  Y +++  
Sbjct: 89  QTAILEGLSYISEEEPEWTFVCARLYLRMM--------YREAARQRGYDARERYGDFYSL 140

Query: 259 YI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314
            +   E+GV + LL E     ++    + L  ++D  F Y+GL+ L DRY       R+ 
Sbjct: 141 IVSLTEQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLY 200

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+PQ  F+ +AM L + E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSSCF
Sbjct: 201 ELPQERFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 260

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TV D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N
Sbjct: 261 VDTVDDSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 320

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++
Sbjct: 321 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQ 380

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKI 540
           V Q   W LF P EV  +     ++F      Y+ +  RG  +               K+
Sbjct: 381 VEQRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVNDSRLSKEKV 434

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597
            A+ + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S   T   
Sbjct: 435 PAIEVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQ 494

Query: 598 ----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                            VCNL SINL     +  F+       I   +R+LDNVID+N  
Sbjct: 495 YVKDGTIIIEKIPGDFVVCNLSSINLARAVTDGVFE-----RLIPIQLRMLDNVIDLNNI 549

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RA+GLG  G+   L L  I + S EAV   DE  E I++ AI AS+EL
Sbjct: 550 PVLQASLTNKKYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLAIQASMEL 609

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y  F GS W  G +            +           WD LK+ V   GMRN 
Sbjct: 610 AKEKGSYPGFSGSDWQTGAY-----------FERRGYKNHGERDWDRLKREVARYGMRNG 658

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             MA+AP A+ + I G + SIDP ++ +Y +        V     V +L ++  W     
Sbjct: 659 YLMAVAPNASTSIIAGSTASIDPIFRKVYAEEKKDYKIPVT----VPDLNEQTTW----- 709

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  + +A+ ID  W I   + RQ+ IDQA S N Y ++  
Sbjct: 710 ----------------------YYKSAYYIDQRWSIRQNAARQRHIDQAISFNFYVMNTI 747

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             K+L  ++  AW  GLKTTYY+RS S T  E
Sbjct: 748 KAKELLELHLTAWKSGLKTTYYVRSTSGTMEE 779


>gi|297587435|ref|ZP_06946080.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
 gi|297575416|gb|EFH94135.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
          Length = 842

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 287/918 (31%), Positives = 464/918 (50%), Gaps = 126/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V   G        + +    E T+      N 
Sbjct: 1   MEIKKRDGNIVDFDRSKIKLAMKKAYASV---GIYAEENELEAMAQEIENTIVNKYPKNH 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +          +D  +  + +  
Sbjct: 58  ---VVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHT----------TDRKVIEEFERF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +I      +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 105 ITDEDVIEI----IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE-GVKA 266
           L+ KE PN+  + + F+   L++ +     KK +    +++Q    +   ++++E G+  
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNI-----KKLE--VQYDLQDFKSK--IKFLDERGLYG 209

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325
             + E   D D+  L   +  +RD  F +  L ++  RY +  + +R+ E  Q  FM +A
Sbjct: 210 SYIREVYTDDDIDELEKYIDDDRDKLFTFSALDLIIKRYLIKTHDNRVMESAQEMFMGIA 269

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LALKE ++   A + Y+ LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 270 MHLALKEKDRIHWAKKIYDNLSTLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYR 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 330 SINNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           G+V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F 
Sbjct: 390 GSVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFD 449

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+S     +L D YG E+E  Y     +    E    R I    L R ++    ETG 
Sbjct: 450 PHEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGT 505

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEET-------------- 597
           P+   +D  N  +P +H G+++SSNLCTEI  N       S + ET              
Sbjct: 506 PFTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPG 565

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R 
Sbjct: 566 DFVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRP 622

Query: 656 IGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           IGLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS
Sbjct: 623 IGLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGS 682

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +         ++RD       +   W+EL   +K  GMRN   MA+APT + + 
Sbjct: 683 DWENGEY--------FKLRD------YNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSI 728

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + ++DP                V++ + + E K                 G+I  +
Sbjct: 729 IAGTTAAVDP----------------VMSRYFLEEKK-----------------GTI--V 753

Query: 835 ERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
            R+   L      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY
Sbjct: 754 PRVAPGLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIY 813

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW  G+K+ YY+RS+S
Sbjct: 814 IRAWEKGIKSIYYVRSKS 831


>gi|148380774|ref|YP_001255315.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|153930834|ref|YP_001385058.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A str. ATCC 19397]
 gi|148290258|emb|CAL84377.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152926878|gb|ABS32378.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A str. ATCC 19397]
          Length = 763

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 263/814 (32%), Positives = 411/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+ + +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-QLVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGNNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRKEFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S    
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469

Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                +   CNL SINL      ++   ++    I   +R+LDN
Sbjct: 470 LEEEIIDGNGYSEIVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FK S W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYIESWKQGVKTIYYVRNKS 752


>gi|153939013|ref|YP_001392092.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum F str. Langeland]
 gi|152934909|gb|ABS40407.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum F str. Langeland]
          Length = 763

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 263/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S    
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469

Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                +   CNL SINL      ++   ++    I   +R+LDN
Sbjct: 470 LEEEIIDGNGYPEVVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FK S W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +  +NE    +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTAPDLNE---EN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|282879358|ref|ZP_06288102.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
 gi|281298555|gb|EFA90980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
          Length = 839

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 291/927 (31%), Positives = 458/927 (49%), Gaps = 147/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++ + +    +I    +++++ +   T  ++ N 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDATI--YQMVQSVEDIVCTNHIKQN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
                 +E IQD+VE +LM++G++   + ++L+R +R+++R      +    DA I   L
Sbjct: 58  ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRIAEDLQDAHITEVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K +  D     F  K                 S ++L + Y +    G++ ++   ALI 
Sbjct: 112 KHIAAD-----FTDKEY---------------SILLLIDKYASFSKAGMTATERMDALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEY 255
           ++  L  +E P +  + AR L  +L + +        L ++Y K +  T      LY  Y
Sbjct: 152 AAVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFLTDRN---LYGAY 208

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRI 314
               +++  KA +  E    F        +   R+    Y GL++L  RY + + + S I
Sbjct: 209 I---LQQYSKAEI--EQAATF--------MDASRNHLLNYSGLELLIKRYVIRNFDNSPI 255

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           E  Q  F+ +A+ LA+ E +     V+ FYN+LS      +TPTL N+     QLSSCF+
Sbjct: 256 ESVQEMFLGIALHLAMNEPQDRMTWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFI 315

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ ND
Sbjct: 316 DTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVND 375

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K  
Sbjct: 376 TAVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMA 435

Query: 494 TQNAG--WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-L 545
            +N    W +F P+EV      +L D YG+E+E  Y  ++  AD     + R+I  +  +
Sbjct: 436 EENLNQDWYMFCPNEVMTAKGYNLEDYYGEEWEKRY--WDCVAD---TSISRRIMPIKEI 490

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------- 598
            R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E         
Sbjct: 491 VRLILRSAVETGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTE 550

Query: 599 ----------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL S++L  H      D  ++   + + VR LDNVID+N + 
Sbjct: 551 EGDTVVVRTVKPGDFVVCNLASLSL-GHLKLE--DETEMKEVVSSVVRALDNVIDLNFYP 607

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +  AK +N T+R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A
Sbjct: 608 LPFAKITNRTYRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIA 667

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761
           +++G+Y  F+GS W  G               E    R    P W  L K+V   GMRN+
Sbjct: 668 KQKGSYKYFEGSDWQTG---------------EYFTKRQYTSPQWKALAKKVSQQGMRNA 712

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + I   +  +DP                V+  F + E K       AM+
Sbjct: 713 YLLAIAPTSSTSIIAATTAGVDP----------------VMKRFFLEEKKG------AML 750

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +            + D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY+ +  
Sbjct: 751 PRVA---------PSLSDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNY 801

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + ++L  +Y  AW  G+KT YY+RS+S
Sbjct: 802 TMRQLLGLYTLAWHCGVKTIYYIRSKS 828


>gi|170754701|ref|YP_001782420.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B1 str. Okra]
 gi|169119913|gb|ACA43749.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 763

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 261/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY++LS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDILSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S    
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469

Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                +   CNL SINL      ++   ++    I   +R+LDN
Sbjct: 470 LEEEIIDGNGYSEIVQRVKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FK S W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +    +L + +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTA---PDLNEEN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|299144103|ref|ZP_07037183.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518588|gb|EFI42327.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 843

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 284/913 (31%), Positives = 455/913 (49%), Gaps = 124/913 (13%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  FD +KI +AI+KA+ +++ +        +++I  +       LL    S  I
Sbjct: 6   KRDGRLVEFDRNKIEKAILKAYKSLDREPD------ENVINEMACSVENLLLNKFPSNHI 59

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDG 152
             +E+IQD VE +L+++  +++ + Y+LYR + +  R           I  K    + D 
Sbjct: 60  ATVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNR----------KIIEKFSEYITDN 109

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
            +I      +  I  +      D+    +   ++  +   +++     A+I ++  L  K
Sbjct: 110 NVIDI----IRDIQNDFDRTHYDIEQLFLKWNSF--LKKDMTQRQYLLAIIKAAAELTSK 163

Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           E PN+  ++ARF++      +     K+  K  + +++ L         +EG+    + +
Sbjct: 164 ESPNWEYISARFMVYDNNSSIKQNSEKRGIKNFYDKIKTL--------TDEGLYGDYILK 215

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL 330
              + D+  L   +   RD  F Y GL ++  RY +  + G+ +E  Q  FM ++M LA+
Sbjct: 216 EYTEEDINELEVYMDSSRDKLFNYSGLDLIVKRYLIRDSEGNVLENIQEMFMGISMHLAI 275

Query: 331 KE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
            E   K   A + Y++LS+     +TPT+ N+   + QLSSCF+  VPD L GI+  +  
Sbjct: 276 PEGNNKVSFAKKLYDILSTLKITVATPTMSNARKPYHQLSSCFIDIVPDSLTGIYRTIDN 335

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G R+G+V 
Sbjct: 336 FAQVSKHGGGMGIYFGKVRSQGSDIRGFKGVAGGVVRWIRLTNDTAVAVDQLGVRQGSVA 395

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507
            YL+ WH D+ EFL LR N GDDR++ HD+  A   PDLF +    N  A W LF P E+
Sbjct: 396 VYLDVWHKDMPEFLQLRTNNGDDRQKAHDVFPAVSYPDLFWRLAKNNIEATWYLFDPHEI 455

Query: 508 SD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  L D YG E+E  Y  YE   +    +  R IS   + R ++  L ETG P+  
Sbjct: 456 EQIMGYKLEDYYGDEWEKRY--YECVNNNKLSR--RTISVKDMIRLIIVSLTETGTPFTF 511

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AV 599
            +D  N  +P +HVG+++SSNLCTEI  N  + ET                        V
Sbjct: 512 NRDAANKANPNKHVGMIYSSNLCTEIMQNMKAIETMDTRIEEINKDSYITKVTKAGDFVV 571

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+ +L +   N  D  +L + +   VR LDNVID+N + +  A+ +N  +RAIGLG
Sbjct: 572 CNLASL-VLGNI--NLEDEKELENIVSITVRALDNVIDLNYYPVPYAEITNQKYRAIGLG 628

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+  AL    I ++S E +E  D+  E I++ AI AS E+A+E+GAY  F GS W+ G
Sbjct: 629 TSGYHHALVQRGIMFSSEEHLEFMDKIYENINYFAIKASSEIAKEKGAYKYFNGSEWESG 688

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +           R + + NR     W +L++ V+  G+RN+  MAIAPT + + I G S
Sbjct: 689 EYF---------RRRDYSSNR-----WKDLQESVRVNGLRNAYLMAIAPTGSTSIIAGTS 734

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             +DP                V+  + + E K                 GSI  I R+  
Sbjct: 735 AGVDP----------------VMKRYFLEEKK-----------------GSI--IPRVAP 759

Query: 840 DLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            L       +  A E+D  W+I +AS RQ+ IDQ QS+NLY+  + + +K+  +   A  
Sbjct: 760 GLNAKTFWNYENAHEVDQDWIIRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLISANE 819

Query: 895 MGLKTTYYLRSRS 907
           MG+K+ YY+R +S
Sbjct: 820 MGIKSIYYVRGKS 832


>gi|322807125|emb|CBZ04699.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 763

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/814 (32%), Positives = 410/814 (50%), Gaps = 115/814 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELEVDSRIQFRDGMTTKEIQRTLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L   L +E          K + H  
Sbjct: 62  --QTAIEKIIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA---------KISRHYN 110

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              Y +Y+   +++ VK +L  E ++    D ++  LA  +  ERD  F Y GL++L DR
Sbjct: 111 SFGYGDYY-ELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDR 169

Query: 305 YFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y +   NG  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+G
Sbjct: 170 YLIKGHNGEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAG 229

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S 
Sbjct: 230 TPFYQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASG 289

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++++ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +
Sbjct: 290 GVVPWIRLYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPS 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVF 537
             IPDLFMKR+ +   W+LF P  V       L D +  E    + N   + +R      
Sbjct: 350 VSIPDLFMKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDLREFTNKYLECERNTNIPR 409

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             +  + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S    
Sbjct: 410 DTVPTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRL 469

Query: 596 ---------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                +   CNL SINL      ++   ++    I   +R+LDN
Sbjct: 470 LEEEIIDGNGYSEIVQRIKAGDMVTCNLNSINL------SKVKKEEFNECIPFQIRMLDN 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ A
Sbjct: 524 VISLNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I +S+ELA+E+G+Y +FK S W+ G +  +  G  +E              W +L+  +K
Sbjct: 584 IKSSMELAKEKGSYPAFKDSEWETGKY-FERRGYNSE-------------RWKKLQSNIK 629

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRN    AIAPT + +NI   +  IDP ++  +++    G FT   +    +L + +
Sbjct: 630 KYGMRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTA---PDLNEEN 685

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W I++ + RQK IDQAQS N
Sbjct: 686 FW---------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFN 718

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 719 LYITPEIKAKEILNMYMESWKQGVKTIYYVRNKS 752


>gi|320527967|ref|ZP_08029133.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
 gi|320131593|gb|EFW24157.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
          Length = 842

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 296/916 (32%), Positives = 453/916 (49%), Gaps = 130/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KRNG V  +D +KI  AI K+F++V  K +     + D+++ +  Q   R       
Sbjct: 8   RIVKRNGQVVPYDGTKIVLAIEKSFLSV--KESVDQAYLSDLLEQIEAQFDGRQE----- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V +E+IQD VE  LM++  + + + Y+LYRE+R+ +R  +            +K++ 
Sbjct: 61  ---VDVEEIQDTVEKILMKNEKYNVAKSYILYREKRTQMRNDR---------LELVKLIG 108

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRT 208
           D+          LE ++ +      D   K  L E +  M  +G S  D  T L  SS  
Sbjct: 109 DE---------ELENVLVDIQKTYPDYDLK-RLYEKFSTMSKEGQSLKDRITLLTRSSAE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE PN+ ++  R L   +  ++  T  K    + + ++  +        IE+G+   
Sbjct: 159 LTTKEEPNWERIAGRLLSYSIASDLRATEEKLGLTSFYQKISYM--------IEQGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAM 326
            + E+    ++  +A  +   R+  F Y GL +L  RY +  +    +E PQ  ++ +AM
Sbjct: 211 YILENYSHKEVDEIATLIDNTRNNLFTYSGLDLLSQRYLIRSHQHVLLESPQEMYIGIAM 270

Query: 327 GLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+KET      V+ FY+++S      +TPT  N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 271 HLAMKETNNRIGWVKKFYDMMSLHKVTMATPTQANARKPYHQLSSCFIDTVPDSLDGIYH 330

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDTAVAV+Q G R 
Sbjct: 331 SISNFADVSKFGGGMGMYLGKVRSRGGSIRGFEGASGGVIRWIRVINDTAVAVDQLGVRA 390

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V +  N  W L  
Sbjct: 391 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVKEDMNQDWYLLD 450

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P +V       L D YG+E+E  Y  +E   D    K    +  V   R +L  + ETG 
Sbjct: 451 PHDVLMVKGYCLEDFYGEEWEKRY--WECVHDNRISKRVLVLKEVV--RLILKSMVETGT 506

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------E 595
           P+  ++D  N  +P +H G+++SSNLCTEI  N S                         
Sbjct: 507 PFAFYRDAVNRANPNKHKGMIYSSNLCTEIAQNMSEVKQISRVIKTEDGDEVIVTTTKPG 566

Query: 596 ETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +  VCNL S+ L     N N  D  ++     T VR LDNVID+N + +  A+ +N  +R
Sbjct: 567 DYVVCNLASLCL----GNINVKDPKEIEEVTATVVRALDNVIDLNFYPLPNAQVTNRKYR 622

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG+ G+   L   HI + S E ++  D+  E I++ +I AS  LA+ERG+Y  F+GS
Sbjct: 623 SIGLGVSGYHHMLAKNHIMWESEEHLKFVDKVFENIAYASIKASNTLAKERGSYQYFEGS 682

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +  D+ G             ++R  W ELK+ V   GMRN+  +A+APT++ + 
Sbjct: 683 EWESGAY-FDARGY-----------DSAR--WKELKEEVHATGMRNAYVLAVAPTSSTSI 728

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--G 832
           + G S  +DP                V+N F + E K                 GSI   
Sbjct: 729 LIGTSAGLDP----------------VMNRFFLEEKK-----------------GSILPR 755

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
               +  D    + TA  ID  W +++A  RQ+ IDQAQS NL++ ++    +L  +Y  
Sbjct: 756 TAPELSADTYWYYKTAHTIDQTWSVKAAGIRQRHIDQAQSFNLWITNDYKMSQLLQLYVL 815

Query: 892 AWLMGLKTTYYLRSRS 907
           A+  G+KT YY RS++
Sbjct: 816 AYDCGVKTIYYTRSKA 831


>gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 748

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/740 (31%), Positives = 387/740 (52%), Gaps = 46/740 (6%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +E  C GL    V    +      N+  G++ S+L+     ++ T+I + P+YA + +R 
Sbjct: 29  IEALCYGLDMNYVDPSAIALRVITNLCSGVTTSELDNLAAETAATMINQHPDYATLASRI 88

Query: 224 LLEKLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  L +E       V+  +Y      T+  +  +  +Y+ + I+               
Sbjct: 89  AISNLHKETKKVFSEVIANLYYAKSSITNEHLPIISEKYY-QIIQNNADK---------- 137

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
               L + + Y+RDF + Y   ++L   + L +NG  +E PQ   MR+A+ +  ++ +K 
Sbjct: 138 ----LNSAILYDRDFNYSYATFKMLESDHLLKLNGKVVERPQHMLMRIAVAIHGEDIDK- 192

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395
              +E YN +S  +F+ +  T+  + T   Q++S FL T+  D + GI   L+   +L  
Sbjct: 193 --VIETYNFMSKQYFIYAAQTIDTACTITQQMASTFLLTMSGDSIDGILDTLERFTILCD 250

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           Y+G +G +   +R     I GT G S G++P LK  + +   V++  K +G +  YLE W
Sbjct: 251 YNGEIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKTYDTSIGTVSKNDKNEGPITVYLEPW 310

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFLDL+++ G+++ R   M    W P+LFMKRV  +  W+L  P E   L + +G
Sbjct: 311 HSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSLMCPHECPGLIEAWG 370

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            EFE  Y  YE++      +  R+I A  LW  ++ +  ETG P+I FKD CN +S  QH
Sbjct: 371 DEFETLYTKYEQEG-----RFRRQIKARELWLLIIQIQCETGVPYIIFKDHCNYKSNHQH 425

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +G +  S+  TE+   SSS+E A+CN  SI  N+  +     FD+ KL    +     LD
Sbjct: 426 LGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFYKLKEIAKIVTHNLD 485

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +ID+N + + +AK S   HR+IG+G+ G   A  L+  P+ S EA E+  +  E + + 
Sbjct: 486 KMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEANELNVQIFETLYYG 545

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS E+A E+G Y S+K S   +G+   D    +  V+       T+   WD LK ++
Sbjct: 546 ALEASCEIATEKGPYESYKDSPISEGILQFD----MWHVKP------TNLWDWDILKAKI 595

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A    A +A +   + SI+P   N+Y    +S  ++++   L+ +L ++
Sbjct: 596 AKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQYSIIKPHLLRDLIEK 655

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LWDE M + + ++ GSI NIE IP+DLK ++ T +E+    + E A+ R  +IDQ+Q L
Sbjct: 656 GLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEMAASRGPFIDQSQCL 715

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
           N+++ +P  +KL  ++  AW
Sbjct: 716 NVHMIDPL-EKLTSMHFFAW 734


>gi|282881359|ref|ZP_06290038.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304765|gb|EFA96846.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 839

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 289/927 (31%), Positives = 457/927 (49%), Gaps = 147/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++ + +    +I    +++++ +   T  ++ N 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDATI--YQMVQSVEDIVCTNHIKQN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
                 +E IQD+VE +LM++G++   + ++L+R +R+++R      +    D  I   L
Sbjct: 58  ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRITEDLQDEHITEVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K +  D     F  K                 S ++L + Y +    G++ ++   ALI 
Sbjct: 112 KHIAAD-----FTDKEY---------------SILLLIDKYASFSKAGMTATERMDALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEY 255
           ++  L  +E P +  + AR L  +L + +        L ++Y K +  T      LY  Y
Sbjct: 152 AAVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFLTDRN---LYGAY 208

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRI 314
               +++  KA +  E    F        +   R+    Y GL++L  RY + + + + I
Sbjct: 209 I---LQQYSKAEI--EQAATF--------MDASRNHLLNYSGLELLIKRYVIRNFDNNPI 255

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           E  Q  F+ +A+ LA+ E +     V+ FYN+LS      +TPTL N+     QLSSCF+
Sbjct: 256 ESVQEMFLGIALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFI 315

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ ND
Sbjct: 316 DTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVND 375

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K  
Sbjct: 376 TAVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMA 435

Query: 494 TQNAG--WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-L 545
            +N    W +F P+EV      +L D YG+E+E  Y  ++  AD     + R+I  +  +
Sbjct: 436 EENLNQDWYMFCPNEVMTAKGYNLEDYYGEEWEKRY--WDCVAD---TTISRRIMPIKEI 490

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------- 598
            R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E         
Sbjct: 491 VRLILRSAVETGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTE 550

Query: 599 ----------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL S++L  H      D  ++   + + VR LDNVID+N + 
Sbjct: 551 EDDTVVVRTVKPGDFVVCNLASLSL-GHLKLE--DETEMREVVSSVVRALDNVIDLNFYP 607

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +  AK +N T+R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A
Sbjct: 608 LPFAKITNRTYRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIA 667

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNS 761
           +++G+Y  F+GS W  G               E    R    P W  L K+V   GMRN+
Sbjct: 668 KQKGSYKYFEGSDWQTG---------------EYFTKRQYTSPEWQALAKKVSQQGMRNA 712

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + I   +  +DP                V+  F + E K       AM+
Sbjct: 713 YLLAIAPTSSTSIIAATTAGVDP----------------VMKRFFLEEKKG------AML 750

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +            + D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY+ +  
Sbjct: 751 PRVA---------PSLSDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNY 801

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + ++L  +Y  AW  G+KT YY+RS+S
Sbjct: 802 TMRQLLGLYTLAWHCGVKTIYYIRSKS 828


>gi|15639992|ref|NP_219445.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189026231|ref|YP_001934003.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093975|sp|O83972|RIR1_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3323332|gb|AAC65956.1| ribonucleoside-diphosphate reductase, subunit alpha (nrdA)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018806|gb|ACD71424.1| ribonucleoside-diphosphate reductase, subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|291060365|gb|ADD73100.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 845

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 295/927 (31%), Positives = 451/927 (48%), Gaps = 141/927 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    +   KI  AI  AF +V+   A     V  II +L  +   +L + N+
Sbjct: 1   MHIIKRNGEPQPYMREKIIVAISAAFRSVQNPLAPE---VPAIITDLAAEVERQLFEMNR 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
           + + VH+E IQD VE +L +  H    + ++LYR++R+  R A+       +D+ +   L
Sbjct: 58  AGVPVHVEKIQDFVEKTLTKYNHSDEVKSFILYRDDRTKKRIAREQIACCFTDSSVLGVL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D     ++              L  ++SK +L +  K + D      L   LI +
Sbjct: 118 KEIQQDFPFPEYS--------------LDALASKFLLFK--KEVTDERRSMQL---LIKA 158

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP-----QKATHHEMQCLYPEYFCRY 259
           +  L  +E P +  + AR L+      + T++ K       +K T+ E   LY       
Sbjct: 159 AVELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLEEAGLY------- 211

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
              GV  R  H S  + +    A  L+  RD  F Y  L ++  RY +       +E PQ
Sbjct: 212 ---GVYIRT-HYSRAEIEEA--ATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQ 265

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             F+ +A+ LA+ ET+   + V+ FY +LS      +TPTL N+     QLSSCF+ TVP
Sbjct: 266 EMFLGIALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVP 325

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   + ++K+ GG+G  +  VR +GA I G  G + G++ ++K+ANDTAVA
Sbjct: 326 DSLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVA 385

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V  N 
Sbjct: 386 VDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNL 445

Query: 498 G--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           G  W L  P E+       L D Y +E+E  Y +  + A   +    R I    L R +L
Sbjct: 446 GASWYLMCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVL 501

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
             + ETG P+  ++D  N  +P  H G+++ SNLCTEI  N S+                
Sbjct: 502 KSVVETGTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKV 561

Query: 595 -------EETAVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNVIDINCHTIEKA 646
                   +  VCNL S+ L    +N     DK L   +R AVR LDNVID+  + +  A
Sbjct: 562 VVQTTRPGDFVVCNLASLVL----SNIDLSDDKELREVVRVAVRALDNVIDLTYYPVPYA 617

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + +N  +RAIGLG+ G+   L    I + S E +  AD   E I+  AI AS+ +A+E+G
Sbjct: 618 QVTNAYYRAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKG 677

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           AY  F GS W  G +     G ++E              W  L++ V T GMRN   +A+
Sbjct: 678 AYGCFTGSDWCTGAY-FRKRGYVSE-------------DWQRLQREVATHGMRNGYLLAV 723

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT++ + I G +  +DP                ++  + + E K        M+     
Sbjct: 724 APTSSTSIIAGTTAGVDP----------------IMKQYFLEEKK-------GML----- 755

Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEP 880
                  + R+   L +    ++ +A  ++  W I +A  RQ+ IDQAQS+NLY+  D  
Sbjct: 756 -------MPRVAPSLSQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFT 808

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             + LD +Y  AW +G+K+ YY+RS+S
Sbjct: 809 LKQVLD-LYVYAWEVGMKSLYYVRSQS 834


>gi|196247936|ref|ZP_03146638.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
 gi|196212720|gb|EDY07477.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
          Length = 760

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 261/812 (32%), Positives = 398/812 (49%), Gaps = 111/812 (13%)

Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL------- 198
           I++DD G   S + +    ++E+A +G   +S    L E  + ++  LS  +        
Sbjct: 8   IVVDDQGKEKSLSRREFAALIEQATAGFVRLS----LEEYEERVWQLLSRKEFVTVDQLY 63

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +TA++     + E+EP +  V AR  L  +        Y++  +   ++ +  Y +++  
Sbjct: 64  QTAILEGLSYISEEEPEWTFVCARLYLRMM--------YREAARQRGYDARERYGDFYSL 115

Query: 259 YI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314
            +   E+GV + LL E     ++    + L  ++D  F Y+GL+ L DRY       R+ 
Sbjct: 116 IVSLTEQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLY 175

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+PQ  F+ +AM L + E  K +  +  E Y  LS+ +   +TPTL N+G  + QLSSCF
Sbjct: 176 ELPQERFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 235

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TV D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N
Sbjct: 236 VDTVDDSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 295

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +TAV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++
Sbjct: 296 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQ 355

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKI 540
           V Q   W LF P EV  +     ++F      Y+ +  RG  +               K+
Sbjct: 356 VEQRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVNEPRLSKEKV 409

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597
            A+ + + ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S   T   
Sbjct: 410 PAIEVMKSIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQ 469

Query: 598 ----------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                            VCNL SINL     +       L   I   +R+LDNVID+N  
Sbjct: 470 YVKDGTIIIEKIPGDFVVCNLSSINLARAVTDG-----VLERLIPIQLRMLDNVIDLNNI 524

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RA+GLG  G+   L L  I + S EAV   DE  E I++  I AS+EL
Sbjct: 525 PVLQASLTNKKYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLVIQASMEL 584

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y  F GS W  G +            +           WD LK+ V   GMRN 
Sbjct: 585 AKEKGSYPGFSGSDWQTGAY-----------FERRGYKNHGERDWDRLKREVARYGMRNG 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             MA+AP A+ + I G + SIDP ++ +Y +        V     V +L ++  W     
Sbjct: 634 YLMAVAPNASTSIIAGSTASIDPIFRKVYAEEKKDYKIPVT----VPDLNEQTTW----- 684

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  + +A+ ID  W I   + RQ  IDQA S N Y ++  
Sbjct: 685 ----------------------YYKSAYYIDQRWSIRQNAARQHHIDQAISFNFYVMNTI 722

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             K+L  ++  AW  GLKTTYY+RS S T  E
Sbjct: 723 KAKELLELHLTAWKSGLKTTYYVRSTSGTMEE 754


>gi|312112172|ref|YP_003990488.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y4.1MC1]
 gi|311217273|gb|ADP75877.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y4.1MC1]
          Length = 761

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/757 (33%), Positives = 378/757 (49%), Gaps = 100/757 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D LS   +   LI    + I E EP +  V AR  L+KL        YK+  K   +E +
Sbjct: 56  DTLSTEQITNYLILEGLSYISETEPEWTFVCARIYLQKL--------YKEAAKQRGYEAK 107

Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y   +      + +GV +  L       ++  L   +  ++D  F Y+GL+ L DRY 
Sbjct: 108 QRYGSLYALITALVSKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYL 167

Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363
               + +  E+PQ  F+ +AM L  KE +  + A+  E Y  LS+ +   +TPTL N+G 
Sbjct: 168 ARDYHRNLYELPQERFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGK 227

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            + QLSSCF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S G
Sbjct: 228 SYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSG 287

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++K  N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T  
Sbjct: 288 VIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGV 347

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-------- 535
            IPDLFM++V +   W LF P EV  +     ++F      Y+ +  RG  +        
Sbjct: 348 CIPDLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVQ 401

Query: 536 ----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                  K+ A+ + + ++    E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N
Sbjct: 402 EERLSKEKVPAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQN 461

Query: 592 SSSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            S                     +  VCNL SINL     +     D L   I   +R+L
Sbjct: 462 QSPTIVEKQYTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLISIQMRML 516

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID+N   + +A+ +N  +RA+GLG  G+   L L  I + S EAVE AD+  E I++
Sbjct: 517 DNVIDLNHIPVLQAQLTNQKYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAY 576

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            AI +S+ELA+E+G+Y +F GS W  G +            ++    R     WD LKK+
Sbjct: 577 LAIRSSMELAKEKGSYPAFPGSDWQTGAY-----------FEKRGYRRNDNADWDTLKKQ 625

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRN   MAIAP A+ + I G + SIDP +  +Y +        V     V +L  
Sbjct: 626 VAKYGMRNGYLMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNA 681

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
              W                            + +A+ ID  W I+  + RQ+ IDQA S
Sbjct: 682 ETTW---------------------------YYKSAYHIDQHWSIKQNAVRQRHIDQAIS 714

Query: 873 LNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            N Y ++    K+L  ++  AW  GLKTTYY+RS S+
Sbjct: 715 FNFYVMNTIKAKELLDLHLTAWKAGLKTTYYVRSTSS 751


>gi|160915702|ref|ZP_02077910.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
 gi|158432178|gb|EDP10467.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 293/921 (31%), Positives = 457/921 (49%), Gaps = 139/921 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQTVTRLLQH 86
           + ++KR+G + SF   KI  A+ KAF + +       + +   +I+  L+E +       
Sbjct: 1   MNIVKRDGSIQSFHEEKIKDAMRKAFRSTQLPIEEEQLHIMAVEIVSQLSEGS------- 53

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                   +EDIQD+VE +LM+  + ++ + Y+LYR +RS+ R A         +   ++
Sbjct: 54  -------RVEDIQDKVEEALMKHSYFQVAKNYILYRSKRSEQRKA---------LKSLVE 97

Query: 147 IMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            + D+G    F    K  +M V +  + L  +  +  L ET        SE  +E  LI 
Sbjct: 98  EVQDEGLKEVFFHIQKDFDMEVYDMSALLTKL--RTFLKETMN------SEQRMEM-LIR 148

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIEE 262
           +S  +I K+ P +  + AR    ++  ++   + +   +  + ++  L  E Y+  YI E
Sbjct: 149 ASVEMISKDAPKWEYIAARLFAYRMHNDIAARMQQLGIQDFYGKLAYLTKEGYYGSYILE 208

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
               +         D+  L   L+ ERD  F Y GL+++  RY +   N   +E PQ  F
Sbjct: 209 NYTQK---------DIAELEAYLQDERDQLFTYSGLELVVKRYLMRAHNHDILETPQEMF 259

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA+ E E+   A + Y++LSS     +TPT+ N+   + QLSSCF+  V D L 
Sbjct: 260 MGIAMHLAIPEQERVVWAKKIYDVLSSLKATMATPTMSNARRPYHQLSSCFIDCVDDSLM 319

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+ +++  A ++KY GG+G  +  VR  G+ I G  G + G+I ++K+ NDTA AV+Q 
Sbjct: 320 NIYKSIENFAQVSKYGGGMGLYFGKVRASGSDIRGYEGAAGGIIRWIKLVNDTATAVDQL 379

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGW 499
           G R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF  M +   NA W
Sbjct: 380 GVRQGAVAVYLDVWHKDLPEFLNLRTNNGDDRMKAHDIFPALCYPDLFWRMAKEDLNATW 439

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            L  P E+       L D YG+E+E  Y  +E   D    K  R++    + R +L    
Sbjct: 440 YLMCPHEIHKTMGYHLEDYYGEEWEKRY--FECVNDPRISK--REMLLKDIVRLILKSAV 495

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 496 ETGTPFAFNRDHVNRMNPNGHEGMIYCSNLCTEIAQNMKPLELLEKEIVEVDGESIVVER 555

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S + E  VCNL S+ L      N     +L   IR  VR LDNVID+N + +  AK +N 
Sbjct: 556 SKAGEFVVCNLASLTLGNLDVQND---SELREVIRVLVRALDNVIDLNYYPLSYAKITNR 612

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+ G+   L    + + S E +   D   E I+++A+ AS +LA+E+G+Y+ F
Sbjct: 613 RYRPIGLGVSGYHHMLAKQGLRFESEEHLAFVDTLFEKINYYALEASSDLAKEKGSYACF 672

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS +  G +  D    + E              W  L+K+VK  G+RN   MA+APT++
Sbjct: 673 EGSDYATGSY-FDKRSYVDE-------------KWWNLRKQVKENGLRNGYLMAVAPTSS 718

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G S  +DP                ++N + + E K                 GS+
Sbjct: 719 TSIISGTSAGVDP----------------IMNKYFLEEKK-----------------GSM 745

Query: 832 GNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
             I R+  DL      ++  A  ID  W++ +A  RQ+ IDQAQS+NLY+ +E + +K+ 
Sbjct: 746 --ITRVAPDLSPATFWLYKQAHLIDQSWIVRAAGVRQRHIDQAQSVNLYITNEFTLRKVL 803

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y +AW  G+KT YY+RS+S
Sbjct: 804 NLYIEAWEQGVKTIYYIRSKS 824


>gi|307564964|ref|ZP_07627481.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346277|gb|EFN91597.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 839

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 289/925 (31%), Positives = 455/925 (49%), Gaps = 143/925 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-----VQDIIKNLTEQTVTRL 83
           + + KR+G + ++ PSKI  AI K+F++ E  G  + I      V+  IK  T++     
Sbjct: 1   MNITKRDGSIEAYTPSKIIIAISKSFISTENTGHQKEIEEMALEVECFIKENTDKR---- 56

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                      +E IQD+VE +LM+ G     + Y+L+R +R++ R    +         
Sbjct: 57  ----------DVESIQDRVEKTLMKHGFFDEAKSYILFRWQRNEQRKYIKN--------- 97

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK----IVLSETYKNMYDGL-SESD 197
                      I+FN    E  +E+  +G+ QD  S      +LS+ + +    L ++ +
Sbjct: 98  -----------IAFNIGDNE--IEKVLNGIRQDFRSAEYSVTLLSDKFMSFSKPLMTQKE 144

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
              ALI ++  L   E P +  +  R L  ++ R +   V +K   ++ ++         
Sbjct: 145 KMNALIKAAVELTTAECPKWEMIAGRLLSFQINRNI-DEVERKLGISSFYDK-------- 195

Query: 257 CRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI- 314
            RY+ +EG+    + E+    D+ +    +   R++ F Y GL +L  RY +     +I 
Sbjct: 196 IRYLTDEGLYGGYILENYSKEDIAWAEKRMDNSRNYLFNYSGLDLLSKRYLIRTFDHKII 255

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           E  Q  +M +A+ LA+ E E     V + Y+LLS      +TPTL N+     QLSSCF+
Sbjct: 256 ERIQEMYMGIALHLAMPEKENRLSWVGKIYDLLSKLEVTMATPTLSNARKPSHQLSSCFI 315

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ ND
Sbjct: 316 DTVPDSLIGIYRSIDNFAQVSKFGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVND 375

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +  
Sbjct: 376 TAVAVDQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMA 435

Query: 494 TQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            QN    W LF P+E+       L D YG+E+E    +Y+   D   +   R IS   L 
Sbjct: 436 EQNLDQNWVLFCPNEILRVKGYALEDFYGEEWE---RHYQECIDDTRLSR-RVISIKDLI 491

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------ 594
           R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++            
Sbjct: 492 RLILRSAVETGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAAIEEISQEVKTEN 551

Query: 595 -----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       E  VCNL S++L         D D +   I T VR LDNVID+N + +
Sbjct: 552 GDKVVVTTVKPGEFVVCNLASLSLGRLPLE---DKDAMCDKINTVVRALDNVIDLNFYPV 608

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             AK +NH +R+IGLG+ G+  AL    I + S   +E  DE  E I++ AI AS ++A+
Sbjct: 609 PFAKITNHRYRSIGLGVSGYHHALAKRGIKWESDRHLEFMDEVFETINYAAIKASSDIAK 668

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G+Y  F GS W  G +         + RD     R+ +  W  L+++V+T GMRN+  
Sbjct: 669 EKGSYEYFNGSDWQTGAY--------FKKRD----YRSDK--WKHLQEKVQTQGMRNAYL 714

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT++ + + G +  +DP  Q  +++         V      EL  +  W       
Sbjct: 715 LAVAPTSSTSILAGTTAGLDPIMQRFFLEEKKGAILPRV----APELSDKTYW------- 763

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                               ++  A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + 
Sbjct: 764 --------------------MYKGAYYINQQWSVRASGIRQRHIDQAQSMNLYITNDYTM 803

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y  AW  G+KT YY+RS+S
Sbjct: 804 RQVLNLYLLAWKCGVKTIYYVRSKS 828


>gi|258648773|ref|ZP_05736242.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851103|gb|EEX70972.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
          Length = 844

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 285/924 (30%), Positives = 449/924 (48%), Gaps = 142/924 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G + ++  SKI  A+  AF ++     + ++  + +I  + ++     +  N+S 
Sbjct: 5   IIKRDGTIENYKASKIGDAVSAAFASIGEVCPAEAL--ETLIAAIEKEL--EGIAENRS- 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM++G ++  R ++LYREER+  RA  +  +    +    +++ D
Sbjct: 60  --VRVEQIQDNVEIELMRAGFYRQARRFILYREERAKDRAYINEIEQTVGLEGMHRLLKD 117

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL--ETALIFSSRT 208
                      ++      C     + SK          Y    +  +  E  L   +R 
Sbjct: 118 -----------VQRDYPHLCKSFGKLVSK----------YHAFHKPSMTAEEGLHALTRA 156

Query: 209 LIE----KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +E    +EP++  V  R  L   + ++        +K    ++Q LY +       EG 
Sbjct: 157 AVECITAEEPDWEFVAGR--LYSFQNDL-----NIRRKMEGLQLQSLYDK-LSYLTTEGY 208

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY----FLHINGSRIEMPQAF 320
               + ES    ++      L+ ERD    Y GL +L  RY    F+H    ++E PQ  
Sbjct: 209 YGAYILESYTKAEIDLAETFLQPERDRLLTYSGLDLLLRRYTVRNFVH---EQLETPQEM 265

Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           ++ +A+ LA++ET+     V  FY++LS      +TPTL N+   H Q+SSCF+ TV D 
Sbjct: 266 YLGIALHLAMRETQNRMDHVRAFYDMLSKQQVSMATPTLANARKPHHQMSSCFIDTVDDS 325

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+
Sbjct: 326 LEGIYRSIANFANVSKFGGGMGLYFGKVRANGSDIRGYKGAAGGVIRWIKLANDTAVAVD 385

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R GAV  YL+ WH D+ +FL LR N GDDR + HD+  A   PDLF K+V +  + 
Sbjct: 386 QLGVRSGAVACYLDVWHKDILDFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKKVREGLDQ 445

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W L  P E+       L D YG E+E  Y +    A   + +V  K     L R +L  
Sbjct: 446 SWYLMCPHEIQTIKGYALEDSYGDEWEQRYNDCVNDARITKTEVLLK----DLIRLILKS 501

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597
             ETG P+  F+D  N  +P +H G+++SSNLC EI  N S  ++               
Sbjct: 502 AIETGTPFAFFRDHVNRMNPNKHKGIIYSSNLCVEIAQNMSPIQSVQIETMKTPEGDDII 561

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRT---AVRVLDNVIDINCHTIEK 645
                     VCNL S+ +      ++ ++D  A   R    AVR LDNVID+N + +E 
Sbjct: 562 VEKTKAGDFVVCNLASLVV------SKINFDDEAEVKRVVYAAVRALDNVIDLNYYPLEY 615

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ +N  +R IGLG+MG+   L    I + S   +E AD+ ME I+++AI AS+ELA+E+
Sbjct: 616 ARVTNRRYRPIGLGIMGYHHYLAQQGIVWESEAHLEAADKLMEKINYYAIRASMELAKEK 675

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  F+GS W  G              D  +  +     W  L   V   G+RN   +A
Sbjct: 676 GHYEYFEGSDWQTG--------------DYFSRRQYESADWQALAADVAQAGVRNGYLLA 721

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT++ + I G +   DP                V+N + + E K              
Sbjct: 722 IAPTSSTSIIAGTTAGTDP----------------VMNRYFLEEKK-------------- 751

Query: 826 YHDGSIGNIE-RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
               +I  +   + D    ++ +A  ID  W I +A  RQ+ +DQAQS+NLY+ ++ + +
Sbjct: 752 --GATIARVAPSLSDKTWWLYKSAHTIDQTWSIRAAGVRQRHVDQAQSVNLYITNDFTLR 809

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  +Y +AW  G+KT YY+RS+S
Sbjct: 810 QVLNLYIKAWECGMKTIYYVRSKS 833


>gi|295401052|ref|ZP_06811026.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976845|gb|EFG52449.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 761

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/757 (33%), Positives = 378/757 (49%), Gaps = 100/757 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D LS   +   LI    + I E EP +  V AR  L+KL        YK+  K   +E +
Sbjct: 56  DTLSTEQITNYLILEGLSYISETEPEWTFVCARIYLQKL--------YKEAAKQRGYEAK 107

Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y   +      + +GV +  L       ++  L   +  ++D  F Y+GL+ L DRY 
Sbjct: 108 QRYGSLYALITALVSKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYL 167

Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363
               + +  E+PQ  F+ +AM L  KE +  + A+  E Y  LS+ +   +TPTL N+G 
Sbjct: 168 ARDYHRNLYELPQERFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGK 227

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            + QLSSCF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S G
Sbjct: 228 SYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSG 287

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++K  N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T  
Sbjct: 288 VIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGV 347

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-------- 535
            IPDLFM++V +   W LF P EV  +     ++F      Y+ +  RG  +        
Sbjct: 348 CIPDLFMEQVEKRGDWYLFDPHEVRKVMGFSLEDF------YDEEKGRGSFREKYWQCVQ 401

Query: 536 ----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                  K+ A+ + + ++    E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N
Sbjct: 402 EERLSKEKVPAIEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQN 461

Query: 592 SSSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            S                     +  VCNL SINL     +     D L   I   +R+L
Sbjct: 462 QSPTIVEKQYTKDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRML 516

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID+N   + +A+ +N  +RA+GLG  G+   L L  I + S EAVE AD+  E I++
Sbjct: 517 DNVIDLNHIPVLQAQLTNQKYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAY 576

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            AI +S+ELA+E+G+Y +F GS W  G +            ++    R     WD LKK+
Sbjct: 577 LAIRSSMELAKEKGSYPAFPGSDWQTGAY-----------FEKRGYRRNDNADWDTLKKQ 625

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRN   MAIAP A+ + I G + SIDP +  +Y +        V     V +L  
Sbjct: 626 VAKYGMRNGYLMAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVT----VPDLNA 681

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
              W                            + +A+ ID  W I+  + RQ+ IDQA S
Sbjct: 682 ETTW---------------------------YYKSAYHIDQHWSIKQNAVRQRHIDQAIS 714

Query: 873 LNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            N Y ++    K+L  ++  AW  GLKTTYY+RS S+
Sbjct: 715 FNFYVVNTIKAKELLDLHLTAWKAGLKTTYYVRSTSS 751


>gi|323343337|ref|ZP_08083564.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
 gi|323095156|gb|EFZ37730.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
          Length = 838

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 291/930 (31%), Positives = 460/930 (49%), Gaps = 154/930 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG V  +D  KI+ AI K+F++     A   +     I    E  +      N 
Sbjct: 1   MEITKRNGSVEHYDKEKIATAIRKSFISTGNSVADTELYA---IVGAVENVI------NT 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
            A   ++E IQD+VE  LM+ G +   + Y+L+R +R++ R A    +    D  IA  L
Sbjct: 52  HADRRNVESIQDEVERKLMEKGFYNEAKSYILFRWKRTEQRKALNAIAEEIGDTAIAGIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETALI 203
           K + +D     + S+           G+  +S K        N +   G++E +  +ALI
Sbjct: 112 KGIAND----FYGSE----------YGISALSEKF-------NSFSRAGMNEDNKLSALI 150

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLT--------TVYKKPQKATHHEMQCLYPE 254
            ++  +   E P++  + AR    +L +++ T        ++Y+K +  T  +   LY +
Sbjct: 151 KAAVEMTTAEAPDWEFIAARLASYQLNKDISTFEETEGIHSLYEKLRYLTDEK---LYGD 207

Query: 255 YFCR-YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           Y  + Y EE              ++   A+ +  ER+    Y G+ +L  RY +     R
Sbjct: 208 YILKAYSEE--------------EIAEAASFIVPERNNLLNYSGIDLLIKRYLMRTYSHR 253

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            IE  Q  F+ +A+ LA+   E+ +R V   +FY++LS      +TPTL N+     QLS
Sbjct: 254 PIESVQEMFLGIALHLAM--NERHRRMVWVRKFYDMLSLLQVTMATPTLSNARKPFHQLS 311

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ TVPD L GIF +L   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K
Sbjct: 312 SCFIDTVPDSLEGIFRSLDNFAQVSKFGGGMGLYFGKVRAAGRKIRGFKGAAGGVIRWMK 371

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF
Sbjct: 372 LVNDTAVAVDQLGMRQGAAAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLF 431

Query: 490 MKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            +   +  N  W +F P+E+       L D YG+E+E   + Y    D  ++++ R++ +
Sbjct: 432 WRMAEEDINQQWYMFCPNEIISVKGYSLEDYYGEEWE---KRYRECVD--DLRISRRVMS 486

Query: 543 VA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--- 598
           +  + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  ET    
Sbjct: 487 IKDIVRLVLRSAVETGTPFTFNRDIVNRTNPNAHRGIIYCSNLCTEIAQNMSEIETVANE 546

Query: 599 --------------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
                               VCNL S++L  H      D  K+ + + T VR LDNVID+
Sbjct: 547 IRTEEGDTVVVRAAKPGDFVVCNLASLSL-GHLPLE--DDGKMKNIVSTVVRALDNVIDL 603

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + +  A+ +NH +R+IGLG+ G+  AL +  I + S   +E  D+  E I+  AI AS
Sbjct: 604 NFYPLHYARITNHRYRSIGLGVSGYHHALAVRGIKWESERHLEFMDQVFERINRAAIEAS 663

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA E+GAY+ F GS W  G +     G +++              W ++ ++    GM
Sbjct: 664 ADLAAEKGAYTYFDGSDWKTGKY-FTKRGYMSK-------------EWQQIARKAAQ-GM 708

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN+  +AIAPT++ + I G +  +DP                V+  F + E K       
Sbjct: 709 RNAYLLAIAPTSSTSIIAGTTAGVDP----------------VMKRFFLEEKKG------ 746

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
           AM+  +            + D     +  A+ ID  W + +A  RQK +DQ+QS+NLY+ 
Sbjct: 747 AMLPRVA---------PNLSDKTYWAYKGAYLIDQKWSMRAAGIRQKHLDQSQSVNLYIT 797

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 798 NEYTMRQVLDLYLLAWKSGVKTLYYVRSKS 827


>gi|212697416|ref|ZP_03305544.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675608|gb|EEB35215.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 805

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 276/854 (32%), Positives = 424/854 (49%), Gaps = 118/854 (13%)

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
           +V +E+IQD VE  L+++ ++K  + Y+LYR + +           D  +    +  +DD
Sbjct: 21  VVTVEEIQDLVELELIENNYYKEVKSYILYRAKHN----------MDRKVLTDFESYIDD 70

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
              +S     ++ I EE  +    + S  +  E++      +++  L  ALI ++  L  
Sbjct: 71  DYTLSI----IKDINEEYDNQRYPIESLYLKFESFTKA--NMTKEALLNALIKAASELTS 124

Query: 212 KE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           KE P++  + ARF++  +  ++  +  K        ++Q L           G+    + 
Sbjct: 125 KEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL--------TSVGLYGAYIL 176

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLA 329
           ES  + DL  L   LK ER+  F Y GL ++  RY +    G  IE  Q  FM ++M LA
Sbjct: 177 ESYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISMHLA 236

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           + E ++   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ ++  
Sbjct: 237 IGEKDRVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRSITN 296

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+GAV 
Sbjct: 297 FAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQGAVA 356

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV 507
            YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF K    N G  W +F P EV
Sbjct: 357 CYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMFDPHEV 416

Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  + D YG+EFE   E Y +     EI   R I+   L R ++    ETG P++ 
Sbjct: 417 LVKYGKSIEDTYGEEFE---EFYHKLVKDKEISK-RVIAIKDLIRLLIKSWTETGTPFVF 472

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------------------- 599
            +D  N  +P +H G+++SSNLCTEI  N S  ET                         
Sbjct: 473 NRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKPGDFVE 532

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+ L     N++ + +++ STI   VR LDNVID+N +    AK +N  +RAIGLG
Sbjct: 533 CNLASLTLGNIDVNDKEELEEVVSTI---VRALDNVIDLNYYPTPYAKVTNKKYRAIGLG 589

Query: 660 LMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
             G+   L    I ++  EA +E  D   E I++ AI AS E+A+E+G+YS F+GS WD 
Sbjct: 590 TSGYHHMLVKNDIKWSEEEAHLEFVDRVYEDINYFAIKASNEIAKEKGSYSCFEGSDWDN 649

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +                        W++LK +V   G+RN   +AIAPT + + I G 
Sbjct: 650 GNY--------------FKQRGYESQRWEKLKDQVHKNGLRNGYLLAIAPTGSTSIISGT 695

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  +DP                ++N + + E K                 G+I  + R+ 
Sbjct: 696 SAGVDP----------------IMNKYFLEEKK-----------------GAI--VPRVA 720

Query: 839 DDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             L      ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  E + +++  IY  AW
Sbjct: 721 PGLNTKTFWLYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAW 780

Query: 894 LMGLKTTYYLRSRS 907
             G+K+ YY+R +S
Sbjct: 781 EAGVKSLYYVRGKS 794


>gi|229816570|ref|ZP_04446869.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
 gi|229807905|gb|EEP43708.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
          Length = 913

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 302/942 (32%), Positives = 449/942 (47%), Gaps = 116/942 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAF-------MAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + KR+G    FD +KI  A+ +AF        A  G  A        +  +  E  +  +
Sbjct: 12  IKKRDGRSERFDGAKIVEAMRRAFEDVADEQAAARGLIAGHGASAPAVSADELEALLASI 71

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-----AQSHSKSD 138
            Q      +  +E +QD VE +LM+ GH ++ + Y+LYR ER++ RA     A++ +  D
Sbjct: 72  EQAMDRDAVDCVEGVQDLVERALMERGHFEVAKSYILYRHERAEKRAVRVELARAVAGLD 131

Query: 139 APIA----------PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYK 187
             IA          P               +  L+  +        D +  + +LS  ++
Sbjct: 132 GEIACEEGRAAAGVPSAADDDTAAAPKDHLAVELDRTLARIQRDFDDPAYDLAMLSARFR 191

Query: 188 NMYDGLSESDLET-ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
            +     ++D    ALI ++  L  +E P +  + AR L     R +          AT 
Sbjct: 192 ALTGAGQDADARLGALIRAAVELTSQEAPRWEMIAARLLDLSFMRHL---------AATR 242

Query: 246 HEMQCLYPEYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
            E+         RY+ E G+    +  S    +L   A  +  ERD  F Y GL +L  R
Sbjct: 243 RELGIASFGELVRYLTERGLYGDYILASYSVSELEEAAAFMVSERDELFAYSGLDLLISR 302

Query: 305 YFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNS 361
           Y +  +  + +E PQ  F+ +A+ LA+ E   ++ A    FY++LS      +TPTL N+
Sbjct: 303 YVIRAHDHTPLESPQEMFLGIALHLAMNEEPTQRLAWVKRFYDMLSKLEVTMATPTLSNA 362

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
                QLSSCF+ TVPD L GI+ ++   A ++KY GG+G     VR  G  I G  G +
Sbjct: 363 RKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVRATGGSIRGFEGVA 422

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GVI +++V NDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  
Sbjct: 423 GGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTNNGDDRMKAHDVFP 482

Query: 482 ANWIPDLF--MKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEI 534
           A   PDLF  M   + +  W L  P ++       L D YG E+E  Y +    AD    
Sbjct: 483 AVCYPDLFWRMAEESLDQDWHLMCPHDILQVKGYALEDFYGDEWERRYRDC--VADPRIS 540

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  R+I    L R +L    ETG P+   +D  N  +P  H GV++ SNLCTEI  N+S+
Sbjct: 541 K--RRILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNGHEGVIYCSNLCTEIAQNTSA 598

Query: 595 EET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
            E                         VCNL S++L         D + +   I TAVR 
Sbjct: 599 IEEVTREVVTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DDEVMGHVIETAVRA 655

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + +  A+ +NH +R+IGLG+ G+   L    I + S + +  ADE  E I+
Sbjct: 656 LDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGISWESEDHLAFADEVFERIN 715

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLPW 746
           +HAI AS  LA+ERGAY  F+GS W  G +        S G +AEVR E AM       W
Sbjct: 716 YHAIRASERLAEERGAYGLFEGSDWQTGAYFAKRGYCSSSGEVAEVR-EGAMGSER---W 771

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL + V   G+RN+  +AIAPT++ + + G +  IDP  +  +++         V    
Sbjct: 772 GELAEAVARNGVRNAYLLAIAPTSSTSILSGTTPGIDPIMRKFFLEEKKGSMLPRV---- 827

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             EL  R  W                            +  A  I+  W + +A  RQ+ 
Sbjct: 828 APELSPRTYW---------------------------YYKPAHYIEQTWSVRAAGVRQRH 860

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           IDQAQS+NLY+ ++ + +++  +Y +AW  G+KT YY+RS+S
Sbjct: 861 IDQAQSMNLYITNDYTLRQVLRLYLEAWRRGVKTIYYVRSKS 902


>gi|255008713|ref|ZP_05280839.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313146448|ref|ZP_07808641.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313135215|gb|EFR52575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
          Length = 838

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 295/923 (31%), Positives = 451/923 (48%), Gaps = 140/923 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG    ++  KI+ AI K+F       AS    V D       +TV  ++   +
Sbjct: 1   MQIIKRNGATEPYNREKIAVAIRKSF-------ASTGREVPD-------ETVYTIVDEVE 46

Query: 89  SALI--VH--IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPI 141
             L   VH  +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H   S     +
Sbjct: 47  LFLCDEVHRSVEQIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKAFNHIVSSIGSEAL 106

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLE 199
           A  LK +  D     +                    S ++L+E + N+   D  +E  L 
Sbjct: 107 ADTLKDIQKDFVANEY--------------------SLVILAEKFVNLCKTDMTAEERLT 146

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY-FCR 258
           T +  +     ++ P++  + AR    +L +++              E+  +Y  Y   R
Sbjct: 147 TLIKAAVELTSQEAPDWEFIAARLFNFQLTQKL----------KVQAEIAGIYSFYDKLR 196

Query: 259 YI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
           Y+ +EG+    +  +    ++   A  +  ERD  F Y GL +L  RY +  +    +E 
Sbjct: 197 YLTDEGLYGDYILSAYSPREIEVAAGFMCPERDKLFNYSGLDLLAKRYLIRTHSHEPMES 256

Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            Q  ++ +A+ L + E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ T
Sbjct: 257 VQEMYLGIALHLGMSEKCDRLQWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDT 316

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTA
Sbjct: 317 VPDSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTA 376

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRV 493
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF  M + 
Sbjct: 377 VAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKE 436

Query: 494 TQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             N  W LF P+E+ +     L D YG+E+E  Y +         +   R ++   + R 
Sbjct: 437 DLNQQWYLFCPNEIMNVKGYCLEDYYGEEWEQKYLD----CINDPLLSKRVLNIKDIVRL 492

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET           
Sbjct: 493 ILRSAVETGTPFTFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSSIETVSTEVRTEGGD 552

Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                        VCNL S++ L H      D  ++   I   VR LDNVID+N + I  
Sbjct: 553 TVVVNTVRPGDFVVCNLASLS-LGHLPLE--DERQMKEKIAVVVRALDNVIDLNFYPIPF 609

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ +NH +R+IGLG+ G+  AL L  I + S E ++  D+  E I++ AI AS  LA+E+
Sbjct: 610 ARITNHRYRSIGLGVSGYHHALALRGIRWESVEHLDFIDKVFECINYAAIEASAGLAKEK 669

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  F+GS W  G +               A      L W +L  +V   GMRN+  +A
Sbjct: 670 GRYVYFEGSDWQTGAY--------------FAKRGYDSLQWKDLAAKVAADGMRNAYLLA 715

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT++ + I G +   DP                V+  F + E K       AM+  + 
Sbjct: 716 IAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA 753

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                      + D    ++  A+ ID  W I +A  RQ  IDQAQSLNLY+ ++ + ++
Sbjct: 754 ---------PSLSDKTYWLYKGAYRIDQTWSIRAAGIRQLHIDQAQSLNLYITNDFTMRQ 804

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           +  +Y  AW  G+KT YY+RS+S
Sbjct: 805 VLNLYLLAWECGVKTVYYVRSKS 827


>gi|257792031|ref|YP_003182637.1| ribonucleotide-diphosphate reductase subunit alpha [Eggerthella
           lenta DSM 2243]
 gi|257475928|gb|ACV56248.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           lenta DSM 2243]
          Length = 845

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 294/924 (31%), Positives = 444/924 (48%), Gaps = 135/924 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KRNG V +++  KI RA+  AF +V               K L ++   RL+   +
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVG--------------KVLDDEEADRLIARIE 46

Query: 89  SALI---------VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
            A+          V +ED+QD VE +LM++ H++  + Y+LYRE+R+  R A+    +  
Sbjct: 47  RAMASAEQGEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRVARERLCAQL 106

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P  P L      G L S      E   EE    L  +S+K   S    +  DG     L 
Sbjct: 107 PSVPALP-----GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLL 151

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             L+ ++  L  +E P +  + AR L+ +  R +   +      A H E    + +    
Sbjct: 152 AMLVKAAVELTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAF 203

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317
             EEG+    + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E P
Sbjct: 204 LTEEGLYGDYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESP 263

Query: 318 QAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  F+ +A+ LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ T
Sbjct: 264 QEMFLGIALHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDT 323

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTA
Sbjct: 324 VPDSLDGIYRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTA 383

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   
Sbjct: 384 VAVDQLGMRQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARD 443

Query: 496 N--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           N    W L  P E+       L D YG+E+   Y   E  AD   IK  R I    + R 
Sbjct: 444 NIEGDWYLMCPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRL 499

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           ++    ETG P+   +D  N  +P +H G+++ SNLCTEI  N  + E            
Sbjct: 500 IIKSAVETGTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGE 559

Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                        VCNL S++ L H   +  D  +LA    +AVR LDNVID+N   +  
Sbjct: 560 QVVVTVTKPGAFVVCNLASLS-LGHI--DMDDPHELAHVTESAVRALDNVIDLNFFPVPY 616

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ +N  +R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+
Sbjct: 617 AEINNRQYRPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREK 676

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           GAY  F+GS W  G +           RD  L   R     W EL + V   G+RN   +
Sbjct: 677 GAYGFFEGSGWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLL 721

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+APT++ + I G +  +DP     +++   +G    V      EL     W        
Sbjct: 722 AVAPTSSTSIIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW-------- 769

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
                               +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +
Sbjct: 770 -------------------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFR 810

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  +Y  AW  G+KT YY+RS+S
Sbjct: 811 RVLDLYLLAWEEGVKTIYYVRSKS 834


>gi|160947323|ref|ZP_02094490.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
 gi|158446457|gb|EDP23452.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
          Length = 854

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 298/939 (31%), Positives = 460/939 (48%), Gaps = 150/939 (15%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            Y F E I  +++IKR+    SFD SKI  AI KAF++V  +          + K L E+
Sbjct: 5   GYKFAEVIL-LRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKL------LSKRLAEE 57

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR----AAQSH 134
               +LQ       + +E+IQD VE +L ++ H++  + Y+LYRE+R+ +R    + + +
Sbjct: 58  VFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREY 117

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG-LQDVSSKIVLSETYKNMYDGL 193
            + ++ I    KI  D      F+++  E+  +  C   L  V     L+E  +      
Sbjct: 118 IEDESLIEVLAKIQKD------FSTEGYEL--DRLCRKFLSFVKPNSTLNEKIE------ 163

Query: 194 SESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
                   LI +S  L  KE PN+  ++AR    K+  E++   Y+K             
Sbjct: 164 -------LLIKASSELTSKENPNWEYISARIYAYKIHNEIVN--YEKEWHIVD------- 207

Query: 253 PEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              F   I+   KA L  E +++     D+  L   +   RD  F Y  L ++Y RY + 
Sbjct: 208 ---FKSKIQVLTKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLIC 264

Query: 309 INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            +  + IE  Q  FM +AM LA+ E ++   A + Y++LS+     +TPT+ N+     Q
Sbjct: 265 DSHKKVIETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQ 324

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 325 LSSCFIDTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRW 384

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ANDTAVAV+Q G R+G+   YL+ WH D+ EFL+LR N GDDR + HD+  A   P+
Sbjct: 385 IKLANDTAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPN 444

Query: 488 LFMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYE--NYERQADRGEIKVFR 538
           LF +   +N  + W LF P EV +     L D YG+E+E  Y     E + D+      R
Sbjct: 445 LFWRLAKENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDK------R 498

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------- 591
            ++   L + +L    ETG P+I  +D  N  +P  H G+++SSNLCTEI  N       
Sbjct: 499 ILTVKDLVKLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDV 558

Query: 592 ----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                             + +  VCNL S+ L      N    +++   + T +R LDNV
Sbjct: 559 EDKILQIDGEDHVVTDVKAGDFVVCNLASLVLGNIDLKND---EEMEFVVSTMIRALDNV 615

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID+N +    AK +N  +RAIGLG  G+  AL    I + + E +E  D+  E I++ AI
Sbjct: 616 IDLNYYPTPFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAI 675

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S ++ +E+G+Y  F+GS W  G +         E RD       +   W ELK++V  
Sbjct: 676 KESSKIGEEKGSYKYFEGSEWQNGKY--------FEKRD------YNSKEWIELKEKVSK 721

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RN+  +A+APT + + I G +  +DP                V+  + + E K    
Sbjct: 722 NGLRNAYLLAVAPTGSTSIIAGTTAGVDP----------------VMMRYFLEEKK---- 761

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQ 871
                        GSI  I R+  DL      ++  A E+D  W I++   RQ+ IDQ Q
Sbjct: 762 -------------GSI--IPRVAPDLTPETFWLYENAHEVDQTWSIKAGGVRQRHIDQGQ 806

Query: 872 SLNLYLDEPSGKKLDFIYRQAWL---MGLKTTYYLRSRS 907
           SLNLY+   +  K+  I +   L   +GLK+ YY+RS+S
Sbjct: 807 SLNLYI--TTDYKMSQILKLLILSCEVGLKSIYYIRSKS 843


>gi|253567023|ref|ZP_04844474.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|251944147|gb|EES84656.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
          Length = 839

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 293/921 (31%), Positives = 453/921 (49%), Gaps = 135/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F A  G+  S      +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D T   +                    S +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262
           ++  L  +E P++  + AR L  +L +       K  ++A    ++  Y +   RY+ EE
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318
           G+    +  +    ++   A  +  +RD  F Y GL +L  RY +    +R+  P    Q
Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ LA+ E ++    V+ FY+LLS      +TPTL N+   + QLSSCF+ TVP
Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVA
Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V +  
Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMVKEDL 439

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           N  W LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L
Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET             
Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++ L H      D +++   + T VR LDNVID+N + +  A+
Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G 
Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +                    +   W+ L  RV   GMRN+  +AIA
Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAARVAENGMRNAYLLAIA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +   DP                V+  F + E K       AM+  +   
Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + D    ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++ 
Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828


>gi|229495846|ref|ZP_04389572.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317159|gb|EEN83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 834

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 286/919 (31%), Positives = 438/919 (47%), Gaps = 140/919 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRN  V SF   KI  A+ +AF A E +     +        L E  +T +     
Sbjct: 1   MKIIKRNKQVESFSVEKIKNALRRAFRATETRVTPAELNA------LCESILTEI----G 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   V +E +QD VE  LM SG++K+ + Y+LYR + S+ R           +  + +  
Sbjct: 51  SPEAVEVEMVQDIVETRLMASGYYKVAKAYILYRTKHSEAR----------EVINRFRHY 100

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE-SDLETALIFSSR 207
           + D  +IS   +  E          Q   +   L   Y   Y    E ++    L  ++ 
Sbjct: 101 IADEEVISLLKELQE----------QYTGAAYALDLLYAKFYAFYKEGAEPLQMLTKAAV 150

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            LI  E P +  + ARFL  +LR+ +     K      + +++ L         EEG+  
Sbjct: 151 ELITPEAPKWEFIAARFLGLELRKGLEKVEEKYHLSGFYAKIKFL--------TEEGLYG 202

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325
           R + E     ++  LA  +   R     Y  L ++  RY +H +   I E PQ  FM +A
Sbjct: 203 RYILEHYTKEEIDELAKVIDNSRSNLLTYSSLHLIAKRYLIHSSDHIILESPQEMFMGIA 262

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E  + + A + Y++LS      +TPT+ N+     QLSSCF+  +PD+L GI+ 
Sbjct: 263 MHLAMPERHRVQWATKIYDILSQLKVTMATPTMSNARKPLSQLSSCFIDVMPDNLIGIYR 322

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            +   A ++KY GG+G     VR +G+ I G  G + GV+ ++K+ANDTA+AV+Q G R+
Sbjct: 323 TIDNFAQVSKYGGGMGIYLGKVRAVGSDIRGFKGVAGGVLKWVKLANDTAIAVDQLGVRQ 382

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           G+V  YL+ WH D+ EFL +R N GDDR + HD+     IPDLF +++ +  N+ W +  
Sbjct: 383 GSVALYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGVCIPDLFWQQLEEDPNSTWYMLC 442

Query: 504 PDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P EV       L D +G E+   Y    R+  +      R I+   + R ++    ETG 
Sbjct: 443 PHEVLSVKGYALEDYWGDEWTRRY----RECLQDSRLAKRPIAIKDMLRLIIKSAVETGT 498

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+I  +D  N  +P  H G+V+ SNLC+EI  + S                       + 
Sbjct: 499 PFIFNRDTVNRMNPNGHCGIVYCSNLCSEIAQSQSEIRLKQQTVVLEEGEEVVIEKTIAG 558

Query: 596 ETAVCNLGSINLLAHFANNQFDYD---KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           +  VCNL S+ L         D +   +L  T+ T VR LDNVID+N + I  A+ +N  
Sbjct: 559 DFVVCNLASLVL------GNIDTESATELRDTVHTIVRALDNVIDLNFYPIPYAEITNLK 612

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG  G+   L    I + S E +   D+  E I+++AI AS  LA E+G Y+ F 
Sbjct: 613 MRPIGLGSSGYHHLLAKRGIAWESQEHLSFMDKLYEQINYYAIEASSLLAAEKGQYARFA 672

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +               A    +   W +L  +V  +GMRN+  MAIAPT++ 
Sbjct: 673 GSDWQTGQY--------------FAKRNYTSERWQKLAAQVAELGMRNAYLMAIAPTSST 718

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  IDP                ++N F + E K                 GSI 
Sbjct: 719 SIIAGTTAGIDP----------------IMNRFFLEEKK-----------------GSI- 744

Query: 833 NIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLD 886
            + R+  DL      ++ TA +ID  W++++A  RQ+ +DQ+QS+NLY+  D   G   D
Sbjct: 745 -VPRVAPDLSDETFWLYKTAHQIDQKWVVDAAGIRQRHLDQSQSVNLYITQDITFGGIRD 803

Query: 887 FIYRQAWLMGLKTTYYLRS 905
            +Y +AW  G+KT YY+RS
Sbjct: 804 -LYLRAWHEGVKTLYYIRS 821


>gi|282860354|ref|ZP_06269422.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586852|gb|EFB92089.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
          Length = 839

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 288/920 (31%), Positives = 447/920 (48%), Gaps = 133/920 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G + ++  SKI  AI K+F + E  G  + I    +        V   L+ N 
Sbjct: 1   MQVTKRDGSIENYTQSKIIAAIGKSFASTENLGHQKEIEEMAL-------EVENFLKENT 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S     +E+IQD+VE +LM  G     + Y+L+R +R++ R    +              
Sbjct: 54  SKR--DVENIQDKVEKTLMAHGFFDEAKSYILFRWQRNEQRKYIKN-------------- 97

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVS----SKIVLSETYKNMYDGL-SESDLETAL 202
                 I+FN    E  +E+  +G+ QD      S  +LS+ + +    L ++ +   AL
Sbjct: 98  ------IAFNIGDNE--IEKVLNGIRQDFRGAEYSVTLLSDKFMSFSKPLMTQKEKLNAL 149

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI- 260
           + ++  L   E P +  +  R L  +L R +   V +K   ++ +E          RY+ 
Sbjct: 150 VKAAVELTTAECPQWEMIAGRLLSFQLNRSI-DEVERKLGLSSFYEK--------LRYLT 200

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           +EG+    + E     D++     +   R+  F Y GL +L  RY +H  +   IE  Q 
Sbjct: 201 DEGLYGTYILEHYSQEDIMAAEKKMDTSRNHLFNYSGLDLLSKRYLIHTFDHKVIERVQE 260

Query: 320 FFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +M +A+ LA+ E E     V + Y+LLS      +TPTL N+   H QLSSCF+ TVPD
Sbjct: 261 MYMGIALHLAIPEKENRMEWVGKIYDLLSQLEVTMATPTLSNARKPHHQLSSCFIDTVPD 320

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV
Sbjct: 321 SLIGIYRSIDNFAQVSKHGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAV 380

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  +
Sbjct: 381 DQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQSLD 440

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTLF P+E+       L D YG+E+E  Y+     A        R IS   L R +L 
Sbjct: 441 QNWTLFCPNEILRVKGYALEDFYGEEWERRYQECINDARLSR----RVISIKDLVRLILR 496

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E               
Sbjct: 497 SAVETGTPFTFNRDIVNRANPNNHKGIIYCSNLCTEIAQNMAAIEEVSQEVKTENGDKVV 556

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S++L         D + +   + T VR LDNVID+N + +  A+ 
Sbjct: 557 ITTVKPGDFVVCNLASLSLGRLPLE---DKEAMCDKVATVVRALDNVIDLNFYPVPYAEI 613

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +NH +R+IGLG+ G+  AL    I + S   +E  +E  E I++ AI AS  +A+E+G+Y
Sbjct: 614 TNHRYRSIGLGVSGYHHALAKRGIKWESDRHLEFMNEVFETINYAAIKASSAIAKEKGSY 673

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G +         + RD       +   W +L+  V   GMRN+  +A+AP
Sbjct: 674 EYFEGSDWQTGAY--------FKKRD------YNSEAWQQLQAHVAQQGMRNAYLLAVAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + + G +  +DP  Q  +++         V      EL  +  W            
Sbjct: 720 TSSTSILAGTTAGLDPIMQRFFLEEKKGAMLPRV----APELSDKTYW------------ 763

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                          ++  A+ I+  W I ++  RQ+ IDQAQS+NLY+ ++ + +++  
Sbjct: 764 ---------------MYKGAYYINQQWSIRASGIRQRHIDQAQSMNLYITNDYTMRQVLN 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 809 LYLLAWKSGVKTIYYVRSKS 828


>gi|289450489|ref|YP_003474450.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185036|gb|ADC91461.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 844

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 281/918 (30%), Positives = 446/918 (48%), Gaps = 128/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG + +F  +KI+ A+ KAF      G +  I    ++K LTE+    +     
Sbjct: 1   MKIEKRNGQIETFRSAKITAAMAKAF-----DGLNVPINDDQLLK-LTEKVEKLINTEVA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  ++ +E +QD VE  LMQ G++++ + Y+LYR ER+  R  +        +   +K  
Sbjct: 55  NGYVLKVERVQDLVEKILMQEGYYEVAKSYILYRSERAQKRTMRRQ------LTELVKFQ 108

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207
             D TL S                  D  S  +L   + + Y   +   +    LI ++ 
Sbjct: 109 GLDETLRSIQKDYK-----------SDNYSLDLLLAKFNSFYKLDMPFQEAMRMLIKAAV 157

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVK 265
            L  +E P +  + AR ++ ++  ++        +     +++ LY +    Y+E EG+ 
Sbjct: 158 ELTTQEAPAWEFIAARLMMLQINEQI-------GEVCKQFKLRNLYDK--ISYLENEGLY 208

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
            R + +S    ++    + +  ER+    Y GL +L  RY +H      IE PQ  F+ +
Sbjct: 209 GRYILQSYSKEEIATAESFIVEERNKLLNYSGLDLLCKRYVIHNYRHQIIETPQEMFLGI 268

Query: 325 AMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           A+ LA+ E   ++R     +FY++LS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 269 ALHLAMHEKNGDERMGWVRKFYDMLSQLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLE 328

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV+Q 
Sbjct: 329 GIYRSITNFAQVSKFGGGMGLYFGKVRAIGSSIRGFQGVAGGVIRWVKLANDTAVAVDQL 388

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGW 499
           G R+G+V  YL+ WH DV EFL +R N GDDR + HD+  A   PDLF ++V  N  + W
Sbjct: 389 GMRQGSVACYLDIWHKDVPEFLQVRTNNGDDRMKAHDIFPAICYPDLFWRQVRDNINSSW 448

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            L  P EV       L D YG+E+E  Y +  R     +    R+I    L R +L    
Sbjct: 449 YLLCPHEVLTVKGYALEDYYGEEWEKRYLDCVRDNRISK----REIPLKELVRLILKSCV 504

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------EE 596
           ETG P+   +D  N  +P +H G+++ SNLCTEI  N S                   E 
Sbjct: 505 ETGTPFTFNRDIVNRNNPNKHKGIIYCSNLCTEICQNMSEIKQVSLELKDENGDTVVVET 564

Query: 597 T-----AVCNLGSINLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           T      VCNL S+ L       + D    ++L S + T VR LDNVID+N + +  AK 
Sbjct: 565 TKPGDFVVCNLASLAL------GRIDMKRPEELESIVGTVVRALDNVIDLNFYPLPYAKH 618

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R++GLG+ G+   L    I + S E ++  D+  E I++ AI  S+ELA+E+G Y
Sbjct: 619 TNKAYRSLGLGISGYHHMLAKNGIAWESEEHLQFVDKIFERINYAAIKTSMELAKEKGKY 678

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G +                +   +   W  L   V   G+RN+  +AIAP
Sbjct: 679 KYFEGSDWATGEY--------------FTLRNYTDEKWQSLASAVAKNGLRNAYLIAIAP 724

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP  +  +++        V+   +  EL     W            
Sbjct: 725 TSSTSIIAGTTAGLDPVMKRYFLEEKKG----VIMPRVAPELSLNTYW------------ 768

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                          ++  A  ID  W + +A  RQ+ IDQAQSLNLY+ +  + +++  
Sbjct: 769 ---------------LYKEAHLIDQEWTVRAAGVRQRHIDQAQSLNLYVTQNLTFRQILG 813

Query: 888 IYRQAWLMGLKTTYYLRS 905
            + +AW  G+KT YY RS
Sbjct: 814 YFIKAWENGVKTIYYCRS 831


>gi|23100544|ref|NP_694011.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22778777|dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 744

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 256/754 (33%), Positives = 375/754 (49%), Gaps = 104/754 (13%)

Query: 194 SESDLETALI-FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           SE+ LE ALI  +   + E  PN+    AR  +EKL RE                 Q  Y
Sbjct: 44  SEAKLEDALINVALENMDEATPNWGFAAARIYVEKLYREA---------SNNRGYTQGSY 94

Query: 253 PEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             ++    +  E+G+    L +     D+      ++ ERD  F YLG+  +  RY    
Sbjct: 95  GSFYALLEQLTEKGIYTPALLQKYTKEDIEEFGKAIQPERDQLFNYLGIYTVATRYLATD 154

Query: 310 NGSRI-EMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           +   + E+PQ  +M +AM +   E   ++++  +E Y  LS+ +   +TPTL N+G  H 
Sbjct: 155 HEKNVYELPQERWMVIAMHIMQDEPADQRQENVLEAYWALSNLYMTVATPTLTNAGKTHG 214

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF+ TV D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GV+P
Sbjct: 215 QLSSCFIDTVDDSLQSIYDSNSDIAKLSKNGGGIGVYMGKIRARGSSIKGFKGMSSGVVP 274

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++K  N+TAV+V+Q G RKGA+  YL+ WH D+E FLDL+ N GDDR R HD+ T   +P
Sbjct: 275 WIKQLNNTAVSVDQLGTRKGAIAIYLDVWHQDIESFLDLKLNNGDDRMRAHDIFTGVCLP 334

Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKV 536
           D FM++V     W LF P EV       L D Y ++     F   YE    +    E   
Sbjct: 335 DYFMEQVENRGDWYLFDPHEVRQVMGYSLEDFYDEQKGSGSFRTRYE----ECIANEALS 390

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593
            RK+ A+ + ++++    E+G P++ ++D  N ++   H G+++ SNLCTEIT N S   
Sbjct: 391 KRKVPAIEIMKRLMKSQLESGTPFMFYRDEVNRQNANAHEGLIYCSNLCTEITQNQSPTE 450

Query: 594 -----------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                            S +  VCNL S+NL     N     D L   I   VR+LDNVI
Sbjct: 451 FVEEFLENENTIVKKFKSGDYVVCNLSSVNLGRAVKN-----DVLERLIPIQVRMLDNVI 505

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN   I++A+ +N  +RAIGLG  G+   L L  I + S EAV  ADE  E I++  I 
Sbjct: 506 DINTLPIKQAEITNRKYRAIGLGTFGWHHLLALKGIAWESDEAVAYADELYEKIAYLTIQ 565

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           +S+EL++E+G Y  ++GS W  G +  D  G                  WDELK  VK  
Sbjct: 566 SSMELSKEKGHYPVYEGSKWQTGEY-FDQKGYTGN-------------KWDELKAEVKQH 611

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRN   MA+AP +T A I G + SIDP +Q  Y +                  +++D  
Sbjct: 612 GMRNGYLMAVAPNSTTAMIAGSTASIDPIFQVFYYE------------------EKKDFK 653

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                 +L +H  ++               +A+ +D  + ++  ++RQK IDQ+ S N Y
Sbjct: 654 IPVTAPELDHHTYNV------------YRRSAYIVDQRFSVKQNAKRQKHIDQSISFNFY 701

Query: 877 LDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
           +  P+  K   +   + QAW  GLKTTYY+RS S
Sbjct: 702 V--PNTIKASVLLDLHTQAWREGLKTTYYVRSTS 733


>gi|265764335|ref|ZP_06092903.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
 gi|263256943|gb|EEZ28289.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
          Length = 839

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 291/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F A  G+  S      +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D T   +                    S +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262
           ++  L  +E P++  + AR L  +L +       K  ++A    ++  Y +   RY+ EE
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318
           G+    +  +    ++   A  +  +RD  F Y GL +L  RY +    +R+  P    Q
Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ LA+ E ++    V+ FY+LLS      +TPTL N+   + QLSSCF+ TVP
Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVA
Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  
Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           N  W LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L
Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET             
Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++ L H      D +++   + T VR LDNVID+N + +  A+
Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G 
Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASTDLAKEKGR 672

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +                    +   W+ L  +V   GMRN+  +AIA
Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +   DP                V+  F + E K       AM+  +   
Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + D    ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++ 
Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828


>gi|53713985|ref|YP_099977.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis YCH46]
 gi|60682186|ref|YP_212330.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis NCTC 9343]
 gi|52216850|dbj|BAD49443.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis YCH46]
 gi|60493620|emb|CAH08409.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis NCTC 9343]
          Length = 839

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 291/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F A  G+  S      +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D T   +                    S +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262
           ++  L  +E P++  + AR L  +L +       K  ++A    ++  Y +   RY+ EE
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318
           G+    +  +    ++   A  +  +RD  F Y GL +L  RY +    +R+  P    Q
Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ LA+ E ++    V+ FY+LLS      +TPTL N+   + QLSSCF+ TVP
Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVP 319

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVA
Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  
Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           N  W LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L
Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET             
Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++ L H      D +++   + T VR LDNVID+N + +  A+
Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G 
Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +                    +   W+ L  +V   GMRN+  +AIA
Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +   DP                V+  F + E K       AM+  +   
Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + D    ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++ 
Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828


>gi|306819884|ref|ZP_07453538.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552131|gb|EFM40068.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 852

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 286/922 (31%), Positives = 442/922 (47%), Gaps = 134/922 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV-----EGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +IKR+G +  FD +KI  AI KAF++V     E K    S  V++  KN   +  T  
Sbjct: 11  LNIIKRSGQIVPFDTNKIKIAIKKAFISVGMEIEEEKLNKLSSDVEEKSKNNFPKDHT-- 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                    V +E++QD VE +L++ G++ + + Y+LYR    ++R              
Sbjct: 69  ---------VSVEEVQDLVEITLIEKGYYAVVKSYILYRASHHNLRKT----------LE 109

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
              +  DD  +     K  E   E+A   L  + SK   S   +NM    S  +  + LI
Sbjct: 110 DFTLYFDDEKIFKLMRKIQEDFKEDAYK-LSFLYSKFT-SFAKENM----SYDEKLSMLI 163

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L  KE P +  ++ RFL  ++            Q     E   L    F   I  
Sbjct: 164 RAACELTSKEAPKWEYISGRFLALQI------------QNTIEKETTMLDIHSFADKIRY 211

Query: 263 GVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317
             K +L    M++     D+  L   L Y RD  F Y GL ++  RY +   +G  +E P
Sbjct: 212 LTKNKLYGPYMLENYSQEDIEELEKYLDYSRDELFNYSGLNLVAKRYLIRDTDGKILESP 271

Query: 318 QAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           Q  FM +AM L++ E +K+   A + Y+ LS+     +TPT+ N+     QLSSCF+  V
Sbjct: 272 QEMFMGIAMHLSIPEKDKKIHYAKKLYDALSTLKVTMATPTMSNARKCFNQLSSCFIDVV 331

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD+L GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+  ++K+ANDTAV
Sbjct: 332 PDNLDGIYRSVTNFAQVSKHGGGMGLYFGKVRAMGSDIRGFKGVAGGITRWVKLANDTAV 391

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495
           AV+Q G R+GA   Y++ WH D  EFL LR N GDDR + HD+     +P+ F K   + 
Sbjct: 392 AVDQLGVRQGACSVYIDLWHKDTPEFLQLRTNNGDDRMKAHDVFPGICVPNYFWKLAKED 451

Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            N+ W +  P E+       L D YG E+E  Y +  + +   +    R IS   + R +
Sbjct: 452 LNSPWYMMCPHEIETVKGYCLEDCYGDEWEEKYLDCVKDSKIDK----RVISVKDMVRLI 507

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE-------- 595
           +    ETG P+I  +D  N  +P  H G+++ SNLCTEI  N       SSE        
Sbjct: 508 IKSAVETGTPFIFNRDIVNKYNPNPHKGMIYCSNLCTEIAQNMEAIQSISSEVKIIDGQE 567

Query: 596 ---------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    +  VCNL S+ L      N    D+L   + T +R LDNVID+N + +  A
Sbjct: 568 IVVEMTKPGDFVVCNLASLVLGNIDVKNP---DELEDIVNTVIRALDNVIDLNYYPVPYA 624

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + +N  +RAIGLG  G+   L    I + S E ++ ADE  E I++ AI AS +LA+E+G
Sbjct: 625 QITNQKYRAIGLGTSGYHHTLVQNDIMFQSEEHLKFADELYENINYFAIKASNQLAKEKG 684

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +Y  F+GS W  G +                    +   W+ELK+ V+  G+RN   MAI
Sbjct: 685 SYKYFEGSNWQDGQY--------------FTKRNYNSKRWEELKQSVEKDGIRNGYIMAI 730

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT + + I G + ++DP  +  +++         +   +   L  +  W          
Sbjct: 731 APTGSTSIIAGTTAAVDPVMKRYFLEEKKGQ----IVPRVAPSLTPKTFW---------- 776

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A +ID  W+I+SA  RQ+ IDQ+QS+NLY+  E + K++
Sbjct: 777 -----------------LYENAHDIDQTWVIKSAGIRQRHIDQSQSVNLYITTEYTMKQI 819

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             +Y  A    +KT YY+RS+S
Sbjct: 820 LQLYITACEQEVKTLYYVRSKS 841


>gi|326792203|ref|YP_004310024.1| ribonucleoside-diphosphate reductase, subunit alpha [Clostridium
           lentocellum DSM 5427]
 gi|326542967|gb|ADZ84826.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           lentocellum DSM 5427]
          Length = 763

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/815 (31%), Positives = 402/815 (49%), Gaps = 107/815 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++I   DG L    + + + +VE AC  L       +  +      D ++  +++  LI 
Sbjct: 3   IEIRKRDGRLEPLCASKTKKMVEFACRNLAGCDPIELELDAKIQFRDKMTTREIQKVLI- 61

Query: 205 SSRTLIEK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
             +T IEK                  N+  V AR L+  L +E    + +      + + 
Sbjct: 62  --QTAIEKVIQTNEDAYGNQVKQTYINWQYVAARLLVYDLYKEA--AISRGYTHFGYGDY 117

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           + LY E     I  G+    L  +  D ++  LA  +  ERD  F Y G+++L DRY + 
Sbjct: 118 KALYEEL----IHRGLYGDYLKMNYTDTEVEELAAYINPERDDLFNYEGIKLLADRYLVK 173

Query: 309 -INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
              G  +E+PQ  FM +AM LA+ E EK    A +FY+LLS      +TPTL N+GT   
Sbjct: 174 GYKGEVMELPQERFMTIAMHLAIPEGEKRVYYAKQFYDLLSQLKMTVATPTLANAGTAFY 233

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF++TV D+L+ I+   Q+ A ++K+ G LG     VR L + I G    S GVIP
Sbjct: 234 QLSSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYLGKVRALNSEIRGHKRSSGGVIP 293

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++++ NDTAVAV+Q G+RKG+    L+ WH D+ +FL+L+ N GDDRR+ HD+  +  IP
Sbjct: 294 WVRLYNDTAVAVDQLGRRKGSASVTLDVWHSDLYDFLELKTNNGDDRRKAHDIFPSISIP 353

Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           DLFM+R+ +   W+LF P  V       L D +  E + A+       +  E      I 
Sbjct: 354 DLFMERLLKRENWSLFDPYMVHKEMGFYLEDYFDDEEDKAFTTRYLACEANEKLERITIP 413

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596
            + + +K++    ETG P+I F+D  N  +P +H+G++++SNLC EI  N S+ E     
Sbjct: 414 TLDIMKKIMISAVETGTPFIFFRDTVNRANPNKHLGMIYASNLCHEIAQNMSASELIAEG 473

Query: 597 ------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
                                CNL S NL       + + ++    I   +R+LDNVI +
Sbjct: 474 TKEVNGEMEVYSRIKPGDMVTCNLNSTNL------GRVEREEFKDIIPLQIRMLDNVITL 527

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +++A+ ++  +RAIGLG  G+   L   HI + S E +++ADE  E +++ AI  S
Sbjct: 528 NQLPVKEAQLTSDRYRAIGLGTSGYHHYLVNHHISWESEEHLKVADELFEDMAYEAIRGS 587

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           +ELA+E+GAY  F+GS W  GV+                    +   W +LK+ V   G+
Sbjct: 588 MELAKEKGAYPGFEGSEWQTGVY--------------FERRGYTSPRWQKLKEEVAKYGL 633

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L   + W  
Sbjct: 634 RNGYIMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKAA---PDLCAENFW-- 687

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                                    ++  A  I+  W I++   RQ+ IDQAQS NLY+ 
Sbjct: 688 -------------------------LYKEAHHINQSWSIKACGIRQRHIDQAQSFNLYVT 722

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            E   K +  +Y  AW  G+KT YY+R++S  + E
Sbjct: 723 PEVKAKDILQMYIDAWQEGVKTLYYVRNQSLETDE 757


>gi|15290502|gb|AAK92209.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis 638R]
 gi|301163664|emb|CBW23218.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis 638R]
          Length = 839

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 290/921 (31%), Positives = 452/921 (49%), Gaps = 135/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F A  G+  S      +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSF-ASTGQEVS-----NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D T   +                    S +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEY--------------------SLVVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EE 262
           ++  L  +E P++  + AR L  +L +       K  ++A    ++  Y +   RY+ EE
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSK-------KLEKQAASAGIRSFYDK--LRYLTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP----Q 318
           G+    +  +    ++   A  +  +RD  F Y GL +L  RY +    +R+  P    Q
Sbjct: 203 GLYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIR---TRLHEPAESVQ 259

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ LA+ E ++    V+ FY+LLS      +TPTL N+   + QLSSCF+ T+P
Sbjct: 260 EMYLGIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTIP 319

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVA
Sbjct: 320 DSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVA 379

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  
Sbjct: 380 VDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDL 439

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           N  W LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L
Sbjct: 440 NQPWYLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVL 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET             
Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTV 555

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++ L H      D +++   + T VR LDNVID+N + +  A+
Sbjct: 556 VVKTVRPGDFVVCNLASLS-LGHLPLE--DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQ 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G 
Sbjct: 613 ITNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGR 672

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +                    +   W+ L  +V   GMRN+  +AIA
Sbjct: 673 YEYFEGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +   DP                V+  F + E K       AM+  +   
Sbjct: 719 PTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG------AMLPRVA-- 754

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + D    ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++ 
Sbjct: 755 -------PALSDKTFWLYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWECGVKTVYYVRSKS 828


>gi|332297026|ref|YP_004438948.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
 gi|332180129|gb|AEE15817.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
          Length = 844

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 286/920 (31%), Positives = 437/920 (47%), Gaps = 128/920 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR G   ++D  KI  AI KAF     K   R     D+ +      +T + +   
Sbjct: 1   MEIIKRTGKTETYDGQKIINAITKAF-----KSTGR-----DVPQTTLRALLTSVEEKLD 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E IQD VE +LM+S      + Y+L+R++RS+ RAA+                
Sbjct: 51  RETVKSVEKIQDLVEQALMESLFFAEAKSYILFRQKRSEFRAARK--------------- 95

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ-----DVSSKIVLSETYKNMY-DGLSESDLETAL 202
            +   LI  +S   E  +E+  SG+Q     +  S   LS  Y +   + ++ES+   AL
Sbjct: 96  -ELCALIRVDSGEGETPLEKVFSGIQKSYQDESYSLKTLSAKYVSFSKENMNESERLAAL 154

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  L+  E P +  +  R L    R  +     +   K+ + +++ L         E
Sbjct: 155 IRAASELVSPEAPKWEFIAGRLLNYSFRHRLRADTERLGLKSFYDKLEYL--------TE 206

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAF 320
            G+    + +S    ++   A  +  ERD  F Y GL +L  RY +       +E PQ  
Sbjct: 207 AGMYGSYILKSYTKAEIEEAAAFIVPERDDLFTYSGLDLLLKRYVIRTGKHVPLETPQEM 266

Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+ +A+ LA+ E  E+      FY++LS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 267 FLGIALHLAMNEPAERMNWVRRFYDMLSRMEVTMATPTLANARKPYHQLSSCFVDTVPDS 326

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + G+I ++++ NDTAVAV+
Sbjct: 327 LNGIYRSIDNFAKVSKFGGGMGMYFGKVRAAGSAIRGFEGAAGGIIRWIRLVNDTAVAVD 386

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497
           Q G R GAV  YL+ WH D+ EFL++R N GDDR + HD+      PDLF K   +N   
Sbjct: 387 QLGVRAGAVAVYLDAWHRDLPEFLNIRTNNGDDRMKAHDVFPGVCYPDLFWKMAKENLDQ 446

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W L  P E+       L D +G+E+E  Y +        +    R +S   + R +L  
Sbjct: 447 DWYLMCPHEICTVKGYHLEDFWGEEWEKRYADCVHDNRIAK----RAVSVKDIVRLVLKS 502

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597
             ETG P++  +D  N  +P  H G+++ SNLCTEI  N S  E+               
Sbjct: 503 AVETGTPFVFNRDTVNRANPNAHRGMIYCSNLCTEIAQNMSGIESVSTQITVQNGETVVV 562

Query: 598 --------AVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                    VCNL S++L     N    D   L S +RTAVR LDNVID+N + +  A+ 
Sbjct: 563 HTTKPGSFVVCNLASLSL----GNLPLEDTAYLQSVVRTAVRALDNVIDLNFYPVPYAEI 618

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R IGLG+ G+  AL    I + S E +  AD   E I+  A+ AS + A E+GAY
Sbjct: 619 TNRAYRPIGLGVSGWHHALAKRAIKWESDEHLAFADRVFETINRAAVEASSDNAAEKGAY 678

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S F GS W  G +               A        W  L ++V+  GMRN+  +A+AP
Sbjct: 679 SCFDGSDWQTGAY--------------FAKRGYDSAEWRALAQKVRAQGMRNAYLLAVAP 724

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  IDP  +  +++       T        EL     W            
Sbjct: 725 TSSTSIIAGTTPGIDPVMKRWFLEEKKGYMLTRT----APELGPETWW------------ 768

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                           +  A +ID  W I S   RQ+ IDQAQS+NLY+ +E + +++  
Sbjct: 769 ---------------YYKNAHQIDQKWSIRSCGIRQRHIDQAQSMNLYITNEYTMRQVLD 813

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+K+ YY+RS+S
Sbjct: 814 LYLLAWECGVKSVYYVRSKS 833


>gi|118442856|ref|YP_878439.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           novyi NT]
 gi|118133312|gb|ABK60356.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           novyi NT]
          Length = 764

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/811 (31%), Positives = 400/811 (49%), Gaps = 108/811 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   +G       ++ + +V  AC GL       +  ++     +G+S  +++  LI 
Sbjct: 3   IKVRKRNGEYEKLCVEKTKKMVSLACEGLDGCDPLELEIDSRIQFRNGMSTKEIQKILI- 61

Query: 205 SSRTLIEK-----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
             +T IEK                   N+  V AR L   L +E       K  +   H 
Sbjct: 62  --QTAIEKVIYIDKNNYDNSPSKKTNINWQYVAARLLAFDLYKEA------KINRNYSHF 113

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               +     + +  G+  + L E+  D ++  L+  ++ +RD  F Y GL++L DRY +
Sbjct: 114 GYGDFLSLVKKLVNMGLYGKYLIENYSDEEIKELSEYIEPKRDELFNYEGLKLLNDRYLI 173

Query: 308 H-INGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              NG  +E+PQ  FM +AM LA+ E +     A +FY+L+S      +TPTL N+GT  
Sbjct: 174 KGFNGEILELPQERFMVIAMHLAIPEGKNRVYFAKKFYDLMSKLKMTVATPTLGNAGTPF 233

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GVI
Sbjct: 234 YQLSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVI 293

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P++K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  I
Sbjct: 294 PWIKLYNDTAVAVDQLGKRKGGASITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSI 353

Query: 486 PDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           PD+FMKR+     W+LF P  +       L D +  E    +     + +  E      +
Sbjct: 354 PDIFMKRLLNRENWSLFDPYTIQKLMGYKLEDYFDDEENKEFTKRYLECEANENLPRDTV 413

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596
           S + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  E    
Sbjct: 414 SCLDVMKKIMKSAVETGAPFIFFRDTVNRANPNKHKGMIYSSNLCHEIAQNMSESELISE 473

Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                 CNL SINL      ++   D+L  +I   +R+LDNVI 
Sbjct: 474 EVTDKNGFNEVVSRIKSGDMVTCNLNSINL------SKVSRDELKESIPLQIRMLDNVIS 527

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ AI A
Sbjct: 528 LNRLPVKESAITSDKYRAIGLGTSGYHQYLASNKIKWESEEHIKEVDSLFEDIAYEAIKA 587

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+GAY+ F+GS W  G +  +  G  +E              W++L++ +   G
Sbjct: 588 SMELAKEKGAYAEFEGSEWQSGKY-FERRGYNSE-------------RWNKLREDIAKYG 633

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L   + W 
Sbjct: 634 IRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEK-KGSFTPKTA---PDLNNENFW- 688

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  I+  W I++ + RQK IDQ+QS NLY+
Sbjct: 689 --------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNLYI 722

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             E   K +  +Y ++W  G+KT YY+R++S
Sbjct: 723 TPEVKAKDILNMYTESWRQGIKTIYYVRNKS 753


>gi|227871658|ref|ZP_03990073.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
 gi|227842500|gb|EEJ52715.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
          Length = 839

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 289/920 (31%), Positives = 454/920 (49%), Gaps = 141/920 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNKS 89
           +IKR      +   KI RA+ KAF+       S  I V Q+ +  L  +    L + ++ 
Sbjct: 7   IIKRGLLEEDYQGEKIERAMEKAFL-------SEGISVEQEKLHFLLGKVEESLAEKHR- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKLK 146
              V +E+IQ+ VE +LM +G +K+ R Y+LYRE+R+ +R  +   K    D  I   L+
Sbjct: 59  ---VSVEEIQNAVEEALMHNGDYKVARAYILYREKRTLLRHLRQRIKEEIGDNEIDDVLR 115

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
               D     ++  RL         G Q++S ++ L          L+ +  E       
Sbjct: 116 RCQKD--FPDYDLARLSAKYLSLSKGEQELSKRLAL----------LTRAAAELT----- 158

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               ++EP + ++  R       +E+     KK +++ +  +   Y +      E+G+  
Sbjct: 159 ---TQEEPGWERIAGRLRSYHFHKEL-----KKAEESRN--LHSFYDK-LVYLTEQGLYG 207

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325
             + E     ++  LA  +   R+  F Y GL +L  RY +  +   + E PQ  ++ ++
Sbjct: 208 AYILEHYSKEEVEELAKFIDQSRNDLFGYSGLDLLLSRYLIRDHQHVVLESPQEMYLGIS 267

Query: 326 MGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           M LA+KE E   + V EFY+++S      +TPT  N+   + QLSSCF+ TVPD L GI+
Sbjct: 268 MHLAMKEKENRLQYVKEFYDMMSLHQVTMATPTQSNARKPYHQLSSCFIDTVPDSLDGIY 327

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++ + A ++KY GG+G  +  VR  G  I G  G S GVI +++V NDTAVAV+Q G R
Sbjct: 328 QSISKFADVSKYGGGMGMYFGKVRSRGGKIRGFEGASGGVIRWIRVVNDTAVAVDQLGMR 387

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GAV  YL+ WH D+ EFL L+ N GDDR + HD+  A   PDLF K+V +  N  W L 
Sbjct: 388 QGAVAVYLDAWHKDLPEFLQLKTNNGDDRMKAHDVFPAVCYPDLFWKKVKEDLNQEWYLM 447

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFET 556
            P ++       L D YG+E+E  YE+  R       ++ +++  +  L R +L    ET
Sbjct: 448 DPHDIFLVKGYCLEDFYGEEWETRYEDCVRDN-----RISKRVYVLKDLVRLILKSAVET 502

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------- 597
           G P+  ++D  N  +P +H G+++ SNLCTEI  N    E                    
Sbjct: 503 GTPFAFYRDTVNRMNPNKHKGIIYCSNLCTEIAQNMKEAEICERKVVTKDGDEVIVSTVK 562

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S+ L      NQ + +++  T+   VR LDNVID+N + + +A+ +N  +
Sbjct: 563 PGDFVVCNLASLCLGNIPVENQPELERITKTV---VRALDNVIDLNFYPVAEAEITNKRY 619

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG+ G+   L   HI + S E ++  D+  E I++ AI AS ELA+ERGAYS+F G
Sbjct: 620 RAIGLGVSGYHHMLAKHHIAWESQEHLDFVDKVFENINYAAIKASSELAKERGAYSAFAG 679

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTATI 772
           S W+ G               E    R    P W+ LK+ V   G+RN+  +A APT++ 
Sbjct: 680 SEWESG---------------EYFSRRNYNSPRWESLKQEVHE-GIRNAWILATAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G S  +DP                ++N F + E K                 G+I 
Sbjct: 724 SILIGTSAGLDP----------------IMNRFFLEEKK-----------------GAI- 749

Query: 833 NIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
            + R+  +L       + +A ++D  W + +A  RQ+ IDQAQS N ++ +E    +L  
Sbjct: 750 -LPRVAPELSMDTYWYYKSAHQMDQTWSVRAAGLRQRHIDQAQSFNFWITNEYKMSELLN 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS++
Sbjct: 809 LYTLAWECGVKTIYYVRSKA 828


>gi|303237765|ref|ZP_07324324.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
 gi|302482051|gb|EFL45087.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
          Length = 839

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 284/919 (30%), Positives = 453/919 (49%), Gaps = 131/919 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G   S+   KI  AI K+F++V   G  R I      + +  +    +L+H+ 
Sbjct: 1   MKIKKRDGSEESYTQQKIISAITKSFISVNSLGHQRDI------EQMALEIEAFVLEHDD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +LM  G +   + Y+L+R +R++ R                K +
Sbjct: 55  KR---DVESIQDIVEKTLMSHGFYDEAKSYILFRWQRNEQR----------------KYI 95

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVS----SKIVLSETYKNMYDGL-SESDLETAL 202
            +    I  NS      +EE  +G+ QD      S  +LS+ + +    L S+++   AL
Sbjct: 96  KNIAFNIGDNS------IEEVLNGIRQDFRGAEYSVTLLSDKFVSFSKPLMSQTEKLAAL 149

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  L   E P +  ++ R L  +L + +     K    + + +++ L         +
Sbjct: 150 IKAAVELTTAECPQWEMISGRLLSFQLNKSIEALERKLNINSFYDKIKYL--------TD 201

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           EG+  + + ++    ++V     ++ ER+  F Y GL +L  RY +   +G  +E  Q  
Sbjct: 202 EGLYGQYILDNYTKEEIVEAEKLMRPERNHLFNYSGLDLLAKRYLIRGYDGRIVENVQEM 261

Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           +M +A+ LA+ E       V+  Y+LLS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 262 YMGIALHLAMPEKSDRLLWVKKIYDLLSQLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 321

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+
Sbjct: 322 LIGIYRSIDNFAQVSKFGGGMGMYFGKVRATGGSIRGFKGAAGGVIRWMKLVNDTAVAVD 381

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   ++   
Sbjct: 382 QLGMRQGAVAVYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEESLEQ 441

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W LF PDE+       L D YG+E+E     Y+   D   +   R IS   L R +L  
Sbjct: 442 NWYLFCPDEIKRVKGYALEDFYGEEWE---RRYKECIDDARLSR-RIISIKDLVRLILRS 497

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG P+   +D  N  +P  H G+++ SNLCTEI  N +                   
Sbjct: 498 AVETGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAEIKEVSQVVTTENGDTVVV 557

Query: 595 -----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +  VCNL S++L         D   +   + T VR LDNVID+N + +  AK +
Sbjct: 558 TTVKPGDFVVCNLASLSLGRLPLE---DKAAMCEKVATVVRALDNVIDLNFYPVPFAKIT 614

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           NH +R+IGLG+ G+  AL +  I + S + +E  D+  E I++ AISAS E+A+E+GAY 
Sbjct: 615 NHNYRSIGLGVSGYHHALAIRGIKWESDKHLEFMDKVFETINYAAISASTEIAKEKGAYK 674

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W  G +         E R+ +  +      W +L++ +   GMRN+  +A+APT
Sbjct: 675 YFEGSDWQTGKY--------FEKRNYITSD------WQQLRETIGKQGMRNAYLLAVAPT 720

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           ++ + + G +  +DP  Q  +++         V   L               SD  Y   
Sbjct: 721 SSTSILAGTTAGLDPIMQRFFLEEKKGAMLPRVAPAL---------------SDKTYW-- 763

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                         ++  A+ I+  W + ++  RQ+ IDQAQS+NLY+ +E + +++  +
Sbjct: 764 --------------VYKDAYHINQQWSVRASGVRQRHIDQAQSMNLYITNEYTMRQVLNL 809

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y  AW  G+KT YY+RS+S
Sbjct: 810 YILAWKSGVKTIYYVRSKS 828


>gi|89097913|ref|ZP_01170800.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087415|gb|EAR66529.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 769

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 261/756 (34%), Positives = 379/756 (50%), Gaps = 103/756 (13%)

Query: 194 SESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           S  +L   LI  S ++I E EP++  V AR  L  L            +KA  H      
Sbjct: 66  SNDELLNQLILDSLSMISEAEPDWTYVAARLYLSSLY-----------EKAAEHRRSTAG 114

Query: 253 PEYFCRY------IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y   Y       + GV + +L ES    ++  +   +  E+D  F Y+ +++L DRY 
Sbjct: 115 ESYGPLYGLITDLTDAGVYSPVLLESYTKEEIDIIGTYIDPEKDRLFTYIAVKMLADRYL 174

Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT 363
                 R+ E+PQ  FM ++M L   E ++ + ++  E Y  LS+ +   +TPTL N+G 
Sbjct: 175 SRDKKKRLFELPQERFMIISMTLNRSEPKERRLSLIKESYWALSNLYMTAATPTLSNAGK 234

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S G
Sbjct: 235 NWGQLSSCFIDTVDDSLQGIYDSNTDIANLSKNGGGIGVYLGKIRSRGSDIKGFKGASSG 294

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+P++K  N+TAV+V+Q G+RKGAV  YL+ WH D+  FLD + N GD+R RTHD+ T  
Sbjct: 295 VLPWMKQLNNTAVSVDQLGQRKGAVSVYLDIWHKDIFSFLDSKLNNGDERYRTHDLFTGV 354

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEIAYENYERQADRGE 533
            +PDLFM+ V     W LF P EV       L D Y ++     F + YE  E  A+   
Sbjct: 355 CLPDLFMETVEARGDWHLFDPHEVRSVMGFSLEDFYDEKPGAGSFRVKYE--ECVANPRL 412

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            K  +K+ A+ + ++++    ETG P++ ++D  N ++P +H+G+++ +NLCTEI  N S
Sbjct: 413 SK--QKVPAIDIMKRIMISQLETGTPFMFYRDEVNRKNPNRHLGMIYCTNLCTEIVQNQS 470

Query: 594 SEET-------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           +  T                    VCNL SINL    A++      L   I   VR+LDN
Sbjct: 471 ATITKDQREEDGRIIIEKIPGDFVVCNLSSINLARAAADHV-----LERLIPIQVRMLDN 525

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID+N   + +   +N  +RAIGLG  G+   L L  + + + EAV +ADE  E I+F  
Sbjct: 526 VIDLNTIPVLQGVATNRKYRAIGLGTFGWHHLLALKKLRWENEEAVRLADELYEKIAFLT 585

Query: 695 ISASVELAQERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           I AS+ LA E+G+Y  FKGS W  G  F       L  V D           WD L + V
Sbjct: 586 IKASMNLAMEKGSYPGFKGSDWHSGEYFTSRGYSSLDSVHD-----------WDSLMQAV 634

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           +  G+RN   MA+AP A+ + I G S SIDP ++  Y  S    D+ +       +L + 
Sbjct: 635 RKNGIRNGYLMAVAPNASTSIIAGSSPSIDPIFRKFY--SEEKKDYKI--PVTAPDLNEH 690

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W                            + +A+ ID  W I   S+RQK IDQA S 
Sbjct: 691 TTW---------------------------YYKSAYVIDQHWSILQNSKRQKHIDQAISF 723

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           NLY+ +    K+L  ++  AW  GLKTTYY+RS S+
Sbjct: 724 NLYVQNNIKAKELLDLHLSAWKNGLKTTYYVRSTSS 759


>gi|317130867|ref|YP_004097149.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475815|gb|ADU32418.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 726

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 251/749 (33%), Positives = 372/749 (49%), Gaps = 97/749 (12%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           SE DL   L+ +   +   EP++  V A   L++L ++V      +P+     E+   + 
Sbjct: 31  SEKDL---LLAALDRISSDEPDWTYVAATIRLQQLYKQVAEKRQMRPE-----EVYTGFA 82

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS 312
                 +E G   + L  +    DL  L   L    D  F YLGL  L DRY    + G 
Sbjct: 83  HNVTYLVEAGFYDQDLAGAYQKDDLERLEAALNKSNDSKFTYLGLHTLIDRYLTRDHEGH 142

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            +E+PQ  FM +AM L +KE ++ KR    +E Y  LS+ +   +TPTL N+G  H QLS
Sbjct: 143 ILELPQERFMIIAMTL-MKEEKQSKRLDYVLEAYWALSNLYMTVATPTLSNAGKTHGQLS 201

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ T+ D L GIF +  + A L+K  GG+G     +R  G+ I G  G S GV+P++K
Sbjct: 202 SCFIDTMDDSLRGIFDSTTDAATLSKNGGGIGIYLGKIRAKGSSIKGFKGTSSGVLPWMK 261

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   +PDLF
Sbjct: 262 QLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDAKLNNGDERKRTHDLFTGVCLPDLF 321

Query: 490 MKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRK 539
           M++V     W LF P EV       L D Y +E     F   YE   R     +      
Sbjct: 322 MEKVEAREAWFLFDPHEVRQTMGFSLEDFYDEERGAGSFREKYEQCVRDPRLSK----ES 377

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----E 595
           + A+ + ++++    ETG P++ ++D  N ++P  H G+++ SNLCTEI  N S+    E
Sbjct: 378 VPAIEIMKRVMISQLETGTPYMFYRDEANRQNPNAHCGMMYGSNLCTEIMQNMSATTIKE 437

Query: 596 ET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ET                VCNL SINL     +       L+  I   VR+LDNVIDIN 
Sbjct: 438 ETTEDGKILITKEAGDYVVCNLSSINLATAVTDGV-----LSRLIPIQVRMLDNVIDINN 492

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +A+ +N  +RAIGLG  G+   L +  + + S EA+  AD+  E I++  I AS+E
Sbjct: 493 IEVPQARLTNEKYRAIGLGTFGWHHLLAITGLRWESEEAINFADKLYEKIAYLTIEASME 552

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GAY  F+ S W  G +               +    +   W  L + V   G+RN
Sbjct: 553 LAKEKGAYEKFENSAWHTGKY--------------FSQRNYTDEKWIALAEMVNRSGLRN 598

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              MA+AP ++ A I G + SIDP Y+  Y +   +    V       ++     W    
Sbjct: 599 GYLMAVAPNSSTAIIAGTTASIDPIYRKEYAEEKKNFRIPVT----APDISPATTW---- 650

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
                                   + +A +ID +W ++    RQK IDQ  S N+Y+ + 
Sbjct: 651 -----------------------YYKSAHDIDQIWSVKQNGARQKHIDQGVSFNIYVKNT 687

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              K+L  I+  AW  GLK+TYY+RS S+
Sbjct: 688 VKAKELLDIHLSAWKHGLKSTYYVRSTSS 716


>gi|294794441|ref|ZP_06759577.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
 gi|294454771|gb|EFG23144.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
          Length = 767

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 8   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 67

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 68  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 123

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 124 ------FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 177

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E E K + A +FY+L+S      +TPTL N+GT
Sbjct: 178 LVKGFNKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 237

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 238 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 297

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 298 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 357

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I
Sbjct: 358 SVPNIFMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI 417

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 418 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 473

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 474 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 527

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+A
Sbjct: 528 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 587

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 588 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 633

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 634 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 689

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 690 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 722

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 723 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 756


>gi|282849774|ref|ZP_06259158.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
 gi|282580711|gb|EFB86110.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
          Length = 760

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 1   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 61  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 117 ------FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E E K + A +FY+L+S      +TPTL N+GT
Sbjct: 171 LVKGFNKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 230

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I
Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI 410

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 411 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+A
Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 580

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 626

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 682

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749


>gi|238018469|ref|ZP_04598895.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
 gi|237864940|gb|EEP66230.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
          Length = 776

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 258/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 17  MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 76

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 77  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 132

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 133 ------FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 186

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E E K + A +FY+L+S      +TPTL N+GT
Sbjct: 187 LVKGFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 246

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 247 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 306

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 307 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 366

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I
Sbjct: 367 SVPNIFMERMIARENFTLFDPHEILAVKGYALEDYYDTDDNKEFTKRYLECEQDPNLHGI 426

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 427 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 482

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 483 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 536

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+++A
Sbjct: 537 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYA 596

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 597 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 642

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 643 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNNKT 698

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 699 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 731

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 732 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 765


>gi|303230488|ref|ZP_07317247.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514854|gb|EFL56837.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 760

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 254/811 (31%), Positives = 405/811 (49%), Gaps = 110/811 (13%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 1   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60

Query: 203 IFSS--RTLIEKEPNYAK-----------VTARFLLEKLRREV-LTTVYKKPQKATHHEM 248
           + ++  + + +K+  +             V AR  L  L +E  +T  YK          
Sbjct: 61  VQTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN---- 116

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY + 
Sbjct: 117 ---FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVK 173

Query: 309 -INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             N    E+PQ  FM +AM LAL E E K + A +FY+L+S      +TPTL N+GT   
Sbjct: 174 GFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFH 233

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP
Sbjct: 234 QLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIP 293

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P
Sbjct: 294 WIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVP 353

Query: 487 DLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEIKVF 537
           ++FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I+V 
Sbjct: 354 NIFMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDPNLHGIEV- 412

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------ 591
               A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N      
Sbjct: 413 ---PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNL 469

Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                         +++ +   CNL SI+L       +   ++L   I   +R+LDNVI 
Sbjct: 470 AEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDNVIS 523

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I A
Sbjct: 524 INQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKA 583

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V   G
Sbjct: 584 SMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLASDVAKYG 629

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  +  W 
Sbjct: 630 IRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKTFW- 684

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                     ++  A  ID  W I++   RQ+ IDQAQS NLY+
Sbjct: 685 --------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYI 718

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 719 TPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749


>gi|327312836|ref|YP_004328273.1| ribonucleoside-diphosphate reductase subunit alpha [Prevotella
           denticola F0289]
 gi|326945781|gb|AEA21666.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola F0289]
          Length = 840

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 285/921 (30%), Positives = 461/921 (50%), Gaps = 134/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   ++D +KIS AI K+F++  GK    +  +  ++  + EQ +T       
Sbjct: 1   MEITKRNGEKEAYDNNKISTAIKKSFIST-GKNVPDN-EIAGMVSKV-EQFIT------D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++          +   
Sbjct: 52  NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207
           +DD  L     +      E A        S + L E + +    G+S  D   ALI ++ 
Sbjct: 102 VDDRQLADVLHRVAHEYRERA-------YSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263
            L   E P +  ++AR L            Y+  QK +  E +     ++   +Y+ EEG
Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRSEQKISRLEDELGLKTFYRKVKYMTEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
           +    + ++  + ++   A+ ++ ER+    Y GL +L  RY + + +G  IE  Q  F+
Sbjct: 204 LYGDYILQNYSEEEINEAASFIRPERNELLNYSGLDLLLKRYVIKNYSGKVIERVQEMFL 263

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            +A+ LA+ E +KE R +     Y+LLS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 264 GIALHLAMPE-KKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+
Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 382

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N 
Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQ 442

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550
            WTLF P+E+       L D YG+E+E  Y +   +++  R      R IS   +   +L
Sbjct: 443 NWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR------RVISIKDIVHLVL 496

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET             
Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTV 556

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++L         D +++   + T VR LDNVI +N + +  A+
Sbjct: 557 VVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYAR 613

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL   HI + S E ++  D+  E I+  AI AS +LA+E+G+
Sbjct: 614 ITNQRYRSIGLGVSGYHHALAKRHIKWESEEHLQFMDKVFETINRAAILASSDLAKEKGS 673

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +  D  G                  W ++++ V   GMRN+  +A+A
Sbjct: 674 YQFFEGSDWQTGAY-FDKRGY-------------DNAEWKDVRRTVARQGMRNAYLLAVA 719

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  +DP  +  +++         V      EL     W           
Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++ 
Sbjct: 765 ----------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVL 808

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 809 DLYLLAWKNGVKTLYYVRSKS 829


>gi|331086749|ref|ZP_08335826.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409915|gb|EGG89350.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 750

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 259/783 (33%), Positives = 379/783 (48%), Gaps = 107/783 (13%)

Query: 172 GLQDVSSKIV------------LSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYA 217
           GLQ+V S I             L E Y   Y  G S  +    L+ ++  L  +E P + 
Sbjct: 17  GLQEVFSDISREFLDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWE 76

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
            + AR  L   R E+        ++     +   Y E  C   +E +    + E+  + +
Sbjct: 77  MIAARIRLVTFRNEL-------KEQMKQRNVNSFY-EKICYLTKENLYGAYILENYTEEE 128

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKE 336
           +      ++ ERD  F Y GL++L +RY +    G  +E PQ  F+ +AM LA+KE    
Sbjct: 129 ITAFEKLMREERDHLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDR 188

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              VE FYN+LS      +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K
Sbjct: 189 SVWVEKFYNMLSKLQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSK 248

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ W
Sbjct: 249 LGGGMGMYFGKVRASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVW 308

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD---- 509
           H D+ EFL+LR N GDDR + HD+      PD F ++   N    W L  P E+      
Sbjct: 309 HRDLPEFLNLRTNNGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGY 368

Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D +G+E++  Y   +  AD  EI+  R I    + R ++  + ETG P+   +D  N
Sbjct: 369 ALEDSFGEEWKKKY--LDCVAD-PEIQK-RVIPIKDVIRMIIKSVVETGTPFAFNRDHVN 424

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AVCNLGSI 605
             +P  H G+++ SNLCTEI  N S  E                         VCNL S+
Sbjct: 425 RANPNSHKGIIYCSNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASL 484

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +L     NN+   ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+  
Sbjct: 485 SLGRIDVNNR---EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHH 541

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    IP+ S E +  A+     I + A+ AS ELA+E+G Y+ F+GS W  G +    
Sbjct: 542 MLAKNEIPWESEEHLAFAERVFAEIHYAAVEASAELAREKGCYTYFEGSKWQTGEY---- 597

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                      A    +   W +L K+V+  GMRN   MAIAPT + + I G +  IDP 
Sbjct: 598 ----------FAERHLTEDRWKKLAKKVRENGMRNGYLMAIAPTGSTSMIAGTTAGIDPV 647

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
               +++   SG    V      EL     W                            +
Sbjct: 648 MSRYFLEEKKSGILPRV----APELTMDTFW---------------------------YY 676

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A  ID  W + +   RQ++IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY+R
Sbjct: 677 KNAHHIDQTWSVRACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIR 736

Query: 905 SRS 907
           S+S
Sbjct: 737 SKS 739


>gi|302344782|ref|YP_003813135.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302149042|gb|ADK95304.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 839

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 284/921 (30%), Positives = 453/921 (49%), Gaps = 135/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++       + I   +I   ++E  V + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFIS-----TGKDISDNEIAGMVSE--VEQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++              
Sbjct: 54  E--LRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY-------------- 97

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIFSS 206
                + + + + L  ++       ++ S S + L E + +    G+S+ D   ALI ++
Sbjct: 98  ----IVWTADDRELADVLHSVAREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EE 262
             L   E P +  ++AR L            Y+  +K T  E +     ++   +Y+ EE
Sbjct: 154 VELTTPEAPAWEMISARIL-----------SYRSEKKITRLEEELGLKTFYRKVKYMTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFF 321
           G+    + ++  + ++   A  +  ER+    Y GL +L  RY + + +G  IE  Q  F
Sbjct: 203 GLYGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMF 262

Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + +A+ LA+ E E     V   Y+LLS      +TPTL NS     QLSSCF+ TVPD L
Sbjct: 263 LGIALHLAMPEKEDRLMWVRRIYDLLSKLEVTMATPTLSNSRKPSHQLSSCFIDTVPDSL 322

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q
Sbjct: 323 DGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQ 382

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498
            G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  
Sbjct: 383 LGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDMNQN 442

Query: 499 WTLFSPDEVSD-----LHDLYGKEFEIAY---ENYERQADRGEIKVFRKISAVALWRKML 550
           W+LF P+E+       L D YG+E+E  Y    N +R +        R IS   + R +L
Sbjct: 443 WSLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR-------RVISIKDIVRLVL 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET             
Sbjct: 496 RSAVETGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTV 555

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++L         D +K+   + T VR LDNVI++N + +  A+
Sbjct: 556 VVTTTRPGEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQ 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL    I + S E +E  D+  E I+  AI AS  LA+E+G+
Sbjct: 613 LTNQRYRSIGLGISGYHHALAKRRIKWESEEHLEFMDKVFETINRAAILASSNLAKEKGS 672

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +  D  G                  W +++K V   GMRN+  +A+A
Sbjct: 673 YQFFEGSDWQTGTY-FDKRGY-------------DSAEWQDVRKTVALQGMRNAYLLAVA 718

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  +DP  +  +++         V      EL     W           
Sbjct: 719 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 763

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++ 
Sbjct: 764 ----------------MYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQIL 807

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 808 DLYLLAWKEGVKTIYYVRSKS 828


>gi|288801823|ref|ZP_06407265.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
 gi|288335865|gb|EFC74298.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
          Length = 839

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 285/920 (30%), Positives = 455/920 (49%), Gaps = 133/920 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++  GK  S S    +I   ++E  V + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFIST-GKDISDS----EIAGMVSE--VEQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++              
Sbjct: 54  E--LRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY-------------- 97

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIFSS 206
                + + + + L  ++       ++ S S + L E + +    G+S+ D   ALI ++
Sbjct: 98  ----IVWTADDRELADVLHSVAREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EE 262
             L   E P +  ++AR L            Y+  +K T  E +     ++   +Y+ EE
Sbjct: 154 VELTTPEAPAWEMISARIL-----------SYRSEKKITRLEEELGLKTFYRKVKYMTEE 202

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFF 321
           G+    + ++  + ++   A  +  ER+    Y GL +L  RY + +  G  IE  Q  F
Sbjct: 203 GLYGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYTGKVIERVQEMF 262

Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + +A+ LA+ E E     V   Y+LLS      +TPTL NS     QLSSCF+ TVPD L
Sbjct: 263 LGIALHLAMPEKEDRLTWVRRIYDLLSKLEVTMATPTLSNSRKSSHQLSSCFIDTVPDSL 322

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q
Sbjct: 323 DGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQ 382

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498
            G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  
Sbjct: 383 LGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQN 442

Query: 499 WTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLT 551
           W+LF P+E+       L D YG+E+E  Y +   +++  R      R IS   + R +L 
Sbjct: 443 WSLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR------RVISIKDIVRLVLR 496

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET              
Sbjct: 497 SAVETGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVV 556

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S++L         D +K+   + T VR LDNVI++N + +  A+ 
Sbjct: 557 VTTTRPGEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQL 613

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+Y
Sbjct: 614 TNQRYRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSNLAKEKGSY 673

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G +  D  G                  W +++K V   GMRN+  +A+AP
Sbjct: 674 QFFEGSDWQTGAY-FDKRGY-------------DSAEWQDVRKTVALQGMRNAYLLAVAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP  +  +++         V      EL     W            
Sbjct: 720 TSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW------------ 763

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                          ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  
Sbjct: 764 ---------------MYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILD 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 809 LYLLAWKEGVKTIYYVRSKS 828


>gi|333030472|ref|ZP_08458533.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741069|gb|EGJ71551.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 835

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 291/927 (31%), Positives = 449/927 (48%), Gaps = 151/927 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN- 87
           +++IKRN  V  F   KI RAI+ AF +++     RS+   ++      + +  L+  N 
Sbjct: 1   MKIIKRNRQVEDFTYDKIKRAIVAAFHSLQ-----RSVSEHEL------EIICDLISVNL 49

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           + +  V +E +QD VE  LM+ GH+K  + Y+LYR+ R+  R   +  +         + 
Sbjct: 50  EDSDYVDVETVQDLVETVLMKRGHYKEAKAYILYRDRRTACREMINQFR---------QT 100

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFS 205
           + DD T+     + L+ I  E      D+     L   Y++ Y  DG   + L+  +  +
Sbjct: 101 ITDDDTI-----ELLQDIQNEFGQKQYDLQ---FLYSKYRSFYKADG---NPLKILMKAA 149

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHHEMQCLYPEYFC 257
              +    PN+  + +R L  +L +E+        LT++YKK    T    Q LY  Y  
Sbjct: 150 VELITPDAPNWEFIASRLLAVELEKEIQQAERELGLTSLYKKMNYLTQ---QNLYGSYML 206

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEM 316
           +   +              ++  L+  +K  R+    Y  L +L  RY + + +   +E 
Sbjct: 207 KNYSQA-------------EVEELSKYMKTSRNQLLTYSSLHLLSKRYLIQNYSHHLLER 253

Query: 317 PQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           PQ  FM +AM LA+ E EK+   A   Y++LS+     +TPT+ N+     QLSSCF   
Sbjct: 254 PQEMFMGIAMHLAIPEGEKKVCWAKRIYDVLSTLKVTMATPTMSNARKPLSQLSSCFEDV 313

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           +PD L GI+  L   A ++K+ GG+G     VR +G+ I G  G + G++ ++K+ NDTA
Sbjct: 314 MPDSLVGIYRTLTNFAQVSKFGGGMGIYIGKVRAVGSDIRGFKGVAGGILKWVKLCNDTA 373

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AV+Q G R+G+V  YL+ WH D+ EFL +R N GDDR + HD+     IPD F ++V  
Sbjct: 374 IAVDQLGVRQGSVAIYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGICIPDYFWEQVKT 433

Query: 496 N--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           N    W L  P E+      +L D YG E++  Y   E   D    K  R I    + R 
Sbjct: 434 NMEGDWYLMCPHEIMTMKGYNLEDTYGDEWKQKY--LECVNDHRIPK--RIIPIKEMVRL 489

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------- 594
           ++    ETG P+I  +D  N  +P +H GV++ SNLCTEI  N S+              
Sbjct: 490 IIKSAVETGTPFIFNRDLVNNLNPNKHQGVIYCSNLCTEIAQNQSAIQDVRRTVRLENGD 549

Query: 595 ----EET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               EET      VCNL S+ +L +   +  D ++L   I T VR LDNVID+N + I  
Sbjct: 550 EIIVEETKAGDFVVCNLASL-VLGNI--DVEDSEELQGIIHTIVRALDNVIDLNFYPIPY 606

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ +N   R IGLG  G+   L    + + S E +   D+  E I+++ I AS +LA+E+
Sbjct: 607 AQITNQKMRPIGLGTSGYHHLLAQKGLRWESDEHLAYMDKVYEKINYYTIEASNQLAKEK 666

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G YS F  S W  G              D   +   +   W  L   V   GMRN   +A
Sbjct: 667 GVYSFFDKSDWQTG--------------DYFKLRGYASEEWKHLATNVAKNGMRNGYLLA 712

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT++ + I G +   DP                V+N + + E K              
Sbjct: 713 IAPTSSTSIIAGTTAGTDP----------------VMNRYFLEEKK-------------- 742

Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
              GSI  + R+  +L      ++ TA +ID  W+I++A  RQ+ +DQ+QS+NLY+  E 
Sbjct: 743 ---GSI--VPRVAPELSDSTFWLYKTAHQIDQSWVIDAAGVRQRHLDQSQSVNLYITQEF 797

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +KL  +Y +AW  G+KT YY+RS+S
Sbjct: 798 TFRKLLNLYLRAWEKGVKTLYYVRSQS 824


>gi|269798662|ref|YP_003312562.1| ribonucleoside-diphosphate reductase, subunit alpha [Veillonella
           parvula DSM 2008]
 gi|269095291|gb|ACZ25282.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula DSM 2008]
          Length = 760

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 1   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 61  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 117 ------FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E + K K A +FY+L+S      +TPTL N+GT
Sbjct: 171 LVKGFNKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGT 230

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L + +     KEF   Y   E+  +   I
Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI 410

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 411 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+A
Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 580

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 626

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 682

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749


>gi|294792662|ref|ZP_06757809.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
 gi|294456561|gb|EFG24924.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
          Length = 767

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 8   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 67

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 68  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 123

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 124 ------FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 177

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E + K K A +FY+L+S      +TPTL N+GT
Sbjct: 178 LVKGFNKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGT 237

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 238 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 297

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 298 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 357

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L + +     KEF   Y   E+  +   I
Sbjct: 358 SVPNIFMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI 417

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 418 EV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 473

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 474 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 527

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+A
Sbjct: 528 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYA 587

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 588 IKASMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLAADVA 633

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 634 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKT 689

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 690 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 722

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 723 LYITPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 756


>gi|325859752|ref|ZP_08172882.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482678|gb|EGC85681.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 840

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 284/921 (30%), Positives = 461/921 (50%), Gaps = 134/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   +++ +KIS AI K+F++  GK    +  +  ++  + EQ +T       
Sbjct: 1   MEITKRNGEKEAYNNNKISTAIKKSFIST-GKNVPDN-EIAGMVSKV-EQFIT------D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++          +   
Sbjct: 52  NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207
           +DD  L     +      E A        S + L E + +    G+S  D   ALI ++ 
Sbjct: 102 VDDRQLADVLHRVAHEYRERA-------YSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263
            L   E P +  ++AR L            Y+  QK +  E +     ++   +Y+ EEG
Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRSEQKISRLEDELGLKTFYRKVKYMTEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
           +    + ++  + ++   A+ ++ ER+    Y GL +L  RY + + +G  IE  Q  F+
Sbjct: 204 LYGDYILQNYSEEEINEAASFIRPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFL 263

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            +A+ LA+ E +KE R +     Y+LLS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 264 GIALHLAMPE-KKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+
Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 382

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N 
Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQ 442

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550
            WTLF P+E+       L D YG+E+E  Y +   +++  R      R IS   + R +L
Sbjct: 443 NWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR------RVISIKDIVRLVL 496

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET             
Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTV 556

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++L         D +++   + T VR LDNVI +N + +  A+
Sbjct: 557 VVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYAR 613

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E+G+
Sbjct: 614 ITNQRYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFEIINRAAILASSDLAKEKGS 673

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G +  D  G                  W ++++ V   GMRN+  +A+A
Sbjct: 674 YQFFEGSDWQTGAY-FDKRGY-------------DNAEWKDVRRTVARQGMRNAYLLAVA 719

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  +DP  +  +++         V      EL     W           
Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++ 
Sbjct: 765 ----------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVL 808

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 809 DLYLLAWKNGVKTLYYVRSKS 829


>gi|303228691|ref|ZP_07315516.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516671|gb|EFL58588.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 760

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 253/811 (31%), Positives = 406/811 (50%), Gaps = 110/811 (13%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 1   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTL 60

Query: 203 IFSS--RTLIEKEPNYAK-----------VTARFLLEKLRREV-LTTVYKKPQKATHHEM 248
           + ++  + + +K+  +             V AR  L  L +E  +T  YK          
Sbjct: 61  VQTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN---- 116

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY + 
Sbjct: 117 ---FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVK 173

Query: 309 -INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             N    E+PQ  FM +AM LAL E + K + A +FY+L+S      +TPTL N+GT   
Sbjct: 174 GFNKEIYELPQERFMAIAMHLALVEGKNKVEYAKKFYDLMSQLKMTTATPTLANAGTPFH 233

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP
Sbjct: 234 QLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIP 293

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P
Sbjct: 294 WIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVP 353

Query: 487 DLFMKRVTQNAGWTLFSPDEV-----SDLHDLY----GKEFEIAYENYERQADRGEIKVF 537
           ++FM+R+     +TLF P E+       L D Y     KEF   Y   E+ ++   I+V 
Sbjct: 354 NIFMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDSNLHGIEV- 412

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------ 591
               A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N      
Sbjct: 413 ---PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNL 469

Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                         +++ +   CNL SI+L       +   ++L   I   +R+LDNVI 
Sbjct: 470 AEEIINKDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDNVIS 523

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I A
Sbjct: 524 INQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKA 583

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V   G
Sbjct: 584 SMELAKEKGAYPAFKGSEWETGEYF---------TRRGYTSDR-----WKQLASDVAKYG 629

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  +  W 
Sbjct: 630 IRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNDKTFW- 684

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                     ++  A  ID  W I++   RQ+ IDQAQS NLY+
Sbjct: 685 --------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYI 718

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 719 TPQMKAKEILDLYVEAYKQGIKTIYYIRNQS 749


>gi|167760515|ref|ZP_02432642.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
 gi|167661881|gb|EDS06011.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
          Length = 843

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 282/919 (30%), Positives = 455/919 (49%), Gaps = 127/919 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHN 87
           +++ KRNG   ++ P KI RA+  AF +V   G   S    D ++KN+ ++   R+ +  
Sbjct: 1   MRISKRNGTNEAYCPEKIKRAVSLAFQSV---GNLLSDEEADRLLKNVEQKIDDRITEEP 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +E+IQD VE +LM++ H+K  + Y+LYREER+  R ++       P   +L +
Sbjct: 58  S----VSVEEIQDFVEQALMEANHYKELKSYILYREERARKRKSRKKLADKIPAFDRLAL 113

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++ D   I     + E  +E   +  Q                  L++ +  + LI ++ 
Sbjct: 114 VLAD---IQKEFTQEEYDLEHLYAKFQAFGKP------------ELNDQEKLSMLIKAAV 158

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  V AR L+    +++     +K  +  H  ++C Y +      E+G+  
Sbjct: 159 ELTTQEAPQWEMVAARLLMLDFEQKL-----EKNMRRCH--IECFYDK-LAYLTEQGLYG 210

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + ++    ++  L   ++ +R+  F Y GL++L  RY +    G  +E PQ  F+ +A
Sbjct: 211 DYILKAYDRDEIERLVLFIEPKRNHLFTYSGLELLLGRYVIRTGKGVPMESPQEMFLGIA 270

Query: 326 MGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           M LA+KE  ++E     FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+
Sbjct: 271 MHLAMKEKKDRESWVKRFYDMLSQLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIY 330

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R
Sbjct: 331 RSIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGMR 390

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F K    N    W L 
Sbjct: 391 QGAVAVYLDVWHRDLPEFLGLRTNNGDDRMKAHDVFPAVCYPDYFWKGARDNIEGDWYLM 450

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKMLTMLFET 556
            P E+       L D +G+++E  Y++  R +     ++ +++  +  + R ++    ET
Sbjct: 451 CPHEILTVKGYALEDYFGEDWEERYQDCVRDS-----RIQKRVIPIKDIIRLIIKSAVET 505

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------------ 598
           G P+   +D  N  +P  H G+++ SNLCTEI  N S+ E                    
Sbjct: 506 GTPFTFNRDTVNRANPNSHKGIIYCSNLCTEIAQNMSAIEQVEQKIEEIDGETVVVTVTK 565

Query: 599 -----VCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                VCNL S++L    LA       D +++A    +AVR LDNVID+N   +  A+ +
Sbjct: 566 PGEFVVCNLASLSLGRLELA-------DEEEIAYITESAVRALDNVIDLNFFPVPYARIN 618

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +R IGLG+ G+   L    I + S E +E  ++    I + AI AS  +A+E+G+Y 
Sbjct: 619 NRKYRPIGLGVSGYHHMLAKHEIAWESEEHLEFVEKVFADIHYAAIKASSRIAREKGSYE 678

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W  G +  D  GL             +   W+EL+  V   G+RN   +A+APT
Sbjct: 679 YFEGSGWQNGSYFADR-GL-------------TDGRWEELRAEVAEYGLRNGYLLAVAPT 724

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           ++ + I G +  +DP     +++   +G    V      EL   + W             
Sbjct: 725 SSTSIIAGTTAGLDPIMSRYFLEEKKNGLMPRV----APELSMDNFW------------- 767

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                          +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +K+  +
Sbjct: 768 --------------YYKNAHYIDQYWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDL 813

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y  AW  G+KT YY+RS+S
Sbjct: 814 YILAWEEGVKTIYYIRSKS 832


>gi|313894419|ref|ZP_07827984.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313441243|gb|EFR59670.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 760

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 256/814 (31%), Positives = 404/814 (49%), Gaps = 116/814 (14%)

Query: 145 LKIMMD--DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++IM+   DG     + ++ + ++  AC GL       +  +      DG++  +++  L
Sbjct: 1   MEIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELELDAKLQFVDGMTTKEIQKTL 60

Query: 203 IFSSRTLIEK----------------EPNYAKVTARFLLEKLRREV-LTTVYKKPQKATH 245
           +   +T IEK                  ++  V AR  L  L +E  +T  YK       
Sbjct: 61  V---QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN- 116

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                 +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY
Sbjct: 117 ------FPNLVHMLVEEKKYADFFVSEYTADELQELGDYIKPKRDYLFNYEGLKLLADRY 170

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            +   N    E+PQ  FM +AM LAL E E K + A +FY+L+S      +TPTL N+GT
Sbjct: 171 LVKGFNKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGT 230

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLSSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S G
Sbjct: 231 PFHQLSSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGG 290

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP++++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A 
Sbjct: 291 VIPWIRLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAI 350

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEI 534
            +P++FM+R+     +TLF P E+       L D +     KEF   Y   E+  +   I
Sbjct: 351 SVPNIFMERMLARENFTLFDPHEILAVKGYALEDYFDTEDEKEFTKRYIECEQDPNLHGI 410

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +V     A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N   
Sbjct: 411 QV----PALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGF 466

Query: 592 -----------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                            +++ +   CNL SI+L       +   ++L   I   +R+LDN
Sbjct: 467 TNLAEEIINEDGTITTKTNTGDMVTCNLNSISL------GRITDEELEENIALQIRMLDN 520

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI IN   + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++
Sbjct: 521 VISINQAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYS 580

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY +FKGS W+ G +           R     +R     W +L   V 
Sbjct: 581 IKASMELAKEKGAYPAFKGSEWETGAYF---------TRRGYTSDR-----WKQLAADVA 626

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L  + 
Sbjct: 627 KYGIRNGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEK-KGSFTPKTA---PDLNNKT 682

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                           ++  A  ID  W I++   RQ+ IDQAQS N
Sbjct: 683 FW---------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFN 715

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+  +   K++  +Y +A+  G+KT YY+R++S
Sbjct: 716 LYITPQMKAKEILDLYVEAYKQGVKTIYYIRNQS 749


>gi|325663146|ref|ZP_08151596.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470600|gb|EGC73830.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 750

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 258/783 (32%), Positives = 378/783 (48%), Gaps = 107/783 (13%)

Query: 172 GLQDVSSKIV------------LSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYA 217
           GLQ+V S I             L E Y   Y  G S  +    L+ ++  L  +E P + 
Sbjct: 17  GLQEVFSDISREFLDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWE 76

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
            + AR  L   R E+        ++     +   Y E  C   +E +    + E+  + +
Sbjct: 77  MIAARIRLVTFRNEL-------KEQMKQRNVNSFY-EKICYLTKENLYGAYILENYTEEE 128

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKE 336
           +      ++ ERD  F Y GL++L +RY +    G  +E PQ  F+ +AM LA+KE    
Sbjct: 129 ITAFEKLMREERDHLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDR 188

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              VE FYN+LS      +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K
Sbjct: 189 SGWVEKFYNMLSKLQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSK 248

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ W
Sbjct: 249 LGGGMGMYFGKVRASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVW 308

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD---- 509
           H D+ EFL+LR N GDDR + HD+      PD F ++   N    W L  P E+      
Sbjct: 309 HRDLPEFLNLRTNNGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGY 368

Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D +G+E++  Y   +  AD  EI+  R I    + R ++  + ETG P+   +D  N
Sbjct: 369 ALEDSFGEEWKKKY--LDCVAD-PEIQK-RVIPIKDVIRMIIKSVVETGTPFAFNRDHVN 424

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEET-----------------------AVCNLGSI 605
             +P  H G+++ SNLCTEI  N S  E                         VCNL S+
Sbjct: 425 RANPNSHKGIIYCSNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASL 484

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +L     NN+   ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+  
Sbjct: 485 SLGRIDVNNK---EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHH 541

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    IP+ S E +  A+     I + A+ AS ELA+E+G+Y+ F+GS W  G +    
Sbjct: 542 MLAKNEIPWESEEHLAFAERVFAEIHYAAVEASAELAKEKGSYTYFEGSKWQTGEY---- 597

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                      A    +   W  L K++   GMRN   MAIAPT + + I G +  IDP 
Sbjct: 598 ----------FAERHLTEDRWKNLAKKIMENGMRNGYLMAIAPTGSTSMIAGTTAGIDPV 647

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
               +++   SG    V      EL     W                            +
Sbjct: 648 MSRYFLEEKKSGILPRV----APELTMDTFW---------------------------YY 676

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A  ID  W + +   RQ++IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY+R
Sbjct: 677 KNAHHIDQTWSVRACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIR 736

Query: 905 SRS 907
           S+S
Sbjct: 737 SKS 739


>gi|311032548|ref|ZP_07710638.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus sp.
           m3-13]
          Length = 755

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 255/747 (34%), Positives = 374/747 (50%), Gaps = 89/747 (11%)

Query: 194 SESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHHEMQCL 251
           ++ +L   LI  +   + E EP++  V +R L +KL++EV       KP    +  ++ L
Sbjct: 56  NQDELTNQLILEALNHVDELEPDWTYVASRLLSQKLQQEVCRNRNISKPYTDFYSLIKGL 115

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
                    ++G+    + ++    ++  L   +  ++D+ F Y+GL+ L DRY    + 
Sbjct: 116 --------TDQGIYQPQILKAYTHKEVNELEAIIDPQKDYLFTYIGLKTLSDRYLTRDHH 167

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            R+ E+PQ  FM +AM L  KE       V E Y  LS+ +   +TPT  N+G  + QLS
Sbjct: 168 KRLLELPQERFMIIAMTLMQKEENNRIHYVKEAYWALSNLYMTVATPTFANAGKTYGQLS 227

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ TV D L GI+ +  + A L+K  GGLG     +R  G+ I G    S GVIP++K
Sbjct: 228 SCFIDTVDDSLQGIYDSNTDIANLSKSGGGLGVYLGKIRSRGSDIRGFKSVSSGVIPWMK 287

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+     IPD+F
Sbjct: 288 QLNNTAVSVDQLGQRKGAISVYLDVWHKDIFSFLDSKLNNGDERMRTHDLFNGVCIPDMF 347

Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIA--YENYERQADRGEIKVFRKISA 542
           M++V     W LF P EV       L D Y +        + YE   +  E+    K+ A
Sbjct: 348 MEQVENRGDWYLFDPHEVRKLMGYSLEDFYDESVGAGSFRQKYEECINHPELPK-EKVPA 406

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
           + + + ++    ETG P++ ++D  N  +P  H G+++ +NLCTEIT N S+  T     
Sbjct: 407 IEIMKAIMKGQLETGSPFMFYRDEVNRMNPNAHKGMIYCTNLCTEITQNQSATITKKQYV 466

Query: 598 --------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                          VCNL SINL       Q     L   I   VR+LDNVI++N   +
Sbjct: 467 EDGTIITVKTPGDFVVCNLSSINLARTIIAGQ-----LERLIPIQVRMLDNVIELNEIPV 521

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +AK +N  +RAIGLG  G+   L +  I + S EAV  ADE  E I+FH I AS  LA+
Sbjct: 522 LQAKMTNEKYRAIGLGTFGWHHLLAIEGIKWESNEAVLYADELYEKIAFHTIQASCLLAK 581

Query: 704 ERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           E+G+Y +F+GS W  G  F   + G             +S+L W  L+K+V   G+RN  
Sbjct: 582 EKGSYPAFEGSDWQTGDYFYKRNYG------------ASSKLDWITLQKQVANYGVRNGY 629

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            MA+AP AT + I G + SIDP +  +Y  S    D+ +       +L     W      
Sbjct: 630 LMAVAPNATTSIIAGSTASIDPIFLKVY--SEEKKDYKI--PVTAPDLNAETTW------ 679

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                                 + +A+ ID  W I   + RQK IDQA S NLY+ +   
Sbjct: 680 ---------------------FYKSAYHIDQHWSIAQNAARQKHIDQAISFNLYVTNTVK 718

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            K L  ++  AW   LKTTYY+RS S+
Sbjct: 719 AKALLELHLDAWKQKLKTTYYVRSTSS 745


>gi|325268391|ref|ZP_08135023.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
 gi|324989245|gb|EGC21196.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
          Length = 840

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 284/924 (30%), Positives = 460/924 (49%), Gaps = 140/924 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQH 86
           +++IKRNG   +++ +KIS AI K+F++   + A   I   V ++ + +T+    R    
Sbjct: 1   MEIIKRNGEKEAYNNNKISIAIKKSFISTGKEIADNEIAGMVGEVEQFITDNPGLRT--- 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                   +EDIQ++VE  LM+ GH+   + Y+L+R +R++ R A ++          + 
Sbjct: 58  --------VEDIQNRVEKCLMEHGHYDEAKNYILFRYQRNEQRQAINY----------IA 99

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYD-GLSESDLETALIF 204
              DD        ++L  ++       ++ S S + L E + +    G+S  D   ALI 
Sbjct: 100 WAADD--------RQLADVLHRVAREYRERSYSMVTLQEKFASFSKPGMSHRDAIDALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI- 260
           ++  L   E P +  ++AR L            Y+  QK +  E +     ++   RY+ 
Sbjct: 152 AAVELTTPEAPAWEMISARIL-----------SYRSEQKISRLEEELGLKTFYQKVRYMT 200

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           EEG+    + ++  + ++   A+ ++ +R+    + GL +L  RY +    G  +E  Q 
Sbjct: 201 EEGLYGDYILQNYGEEEINEAADFMQPDRNELLNFSGLDLLLKRYVIKSYAGKVLERVQE 260

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            F+ +A+ LAL E +KE R +     Y+LLS      +TPTL N+   + QLSSCF+ TV
Sbjct: 261 MFLGIALHLALPE-KKEDRLLWVRRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTV 319

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD L GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAV
Sbjct: 320 PDSLDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAV 379

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495
           AV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   + 
Sbjct: 380 AVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEED 439

Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWR 547
            N  WTLF P+E+       L D YG+E+E  Y +   +++  R      R IS   + R
Sbjct: 440 LNQNWTLFCPNEIMRIKGYCLEDCYGEEWERRYLDCVNDQRISR------RVISIKDIVR 493

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597
            +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET          
Sbjct: 494 LVLRSAVETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDG 553

Query: 598 -------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                         VCNL S++L         D +++   + T VR LDNVI +N + + 
Sbjct: 554 DTVVVTKTRPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVP 610

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A+ +N  +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E
Sbjct: 611 YARITNQRYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSDLARE 670

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G+Y  F+GS W  G +  D  G                  W E+++ V   GMRN+  +
Sbjct: 671 KGSYQFFEGSEWQTGAY-FDKRGY-------------GSAEWQEVRRTVARQGMRNAYLL 716

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+APT++ + I G +  +DP  +  +++         V      EL     W        
Sbjct: 717 AVAPTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW-------- 764

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
                              ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +
Sbjct: 765 -------------------MYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMR 805

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  +Y  AW  G+KT YY+RS+S
Sbjct: 806 QVLDLYLLAWKSGVKTLYYVRSKS 829


>gi|317488667|ref|ZP_07947207.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
 gi|316912226|gb|EFV33795.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
          Length = 845

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 294/915 (32%), Positives = 443/915 (48%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KRNG V +++  KI RA+  AF +V   G        D +    E+ +    Q   
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASV---GTVLDDDEADRLIARIERAMASAEQGEG 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L   
Sbjct: 58  GS--VSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALP-- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L S      E   EE    L  +S+K   S    +  DG     L   L+ ++  
Sbjct: 114 ---GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLLAMLVKAAVE 160

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  + AR L+ +  R +   +      A H E    + +      EEG+   
Sbjct: 161 LTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAFLTEEGLYGD 212

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326
            + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E PQ  F+ +A+
Sbjct: 213 YILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIAL 272

Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI+
Sbjct: 273 HLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGIY 332

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G R
Sbjct: 333 RSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGMR 392

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L 
Sbjct: 393 QGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYLM 452

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P E+       L D YG+E+   Y   E  AD   IK  R I    + R ++    ETG
Sbjct: 453 CPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRLIIKSAVETG 508

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------- 597
            P+   +D  N  +P +H G+++ SNLCTEI  N  + E                     
Sbjct: 509 TPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTKP 568

Query: 598 ---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               VCNL S++ L H   +  D  +LA    +AVR LDNVID+N   +  A+ +N  +R
Sbjct: 569 GAFVVCNLASLS-LGHI--DMGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQYR 625

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+GS
Sbjct: 626 PIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEGS 685

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            W  G +           RD  L   R     W EL + V   G+RN   +A+APT++ +
Sbjct: 686 GWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 820 WEEGMKTIYYVRSKS 834


>gi|325831680|ref|ZP_08164897.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
 gi|325486551|gb|EGC89000.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
          Length = 845

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 294/915 (32%), Positives = 443/915 (48%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KRNG V +++  KI RA+  AF +V   G        D +    E+ +    Q   
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASV---GTVLDDDEADRLIARIERAMASAEQGEG 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L   
Sbjct: 58  GS--VSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALP-- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L S      E   EE    L  +S+K   S    +  DG     L   L+ ++  
Sbjct: 114 ---GVLASVQK---EFPGEE--YELAHLSAKF-QSFAKPDAADG----QLLAMLVKAAVE 160

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  + AR L+ +  R +   +      A H E    + +      EEG+   
Sbjct: 161 LTTQEAPRWEIIAARLLMVQFDRALAERL-----AARHIET---FAQKVAFLTEEGLYGD 212

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326
            + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E PQ  F+ +A+
Sbjct: 213 YILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIAL 272

Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI+
Sbjct: 273 HLAMEERPDERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGIY 332

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G R
Sbjct: 333 RSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGMR 392

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L 
Sbjct: 393 QGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYLM 452

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P E+       L D YG+E+   Y   E  AD   IK  R I    + R ++    ETG
Sbjct: 453 CPHEILTVKGYALEDCYGEEWTRKY--LECVAD-ARIKK-RAIPIKDVIRLIIKSAVETG 508

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------- 597
            P+   +D  N  +P +H G+++ SNLCTEI  N  + E                     
Sbjct: 509 TPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTKP 568

Query: 598 ---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               VCNL S++ L H   +  D  +LA    +AVR LDNVID+N   +  A+ +N  +R
Sbjct: 569 GAFVVCNLASLS-LGHI--DMGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQYR 625

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+GS
Sbjct: 626 PIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEGS 685

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            W  G +           RD  L   R     W EL + V   G+RN   +A+APT++ +
Sbjct: 686 GWQTGEY----------FRDRGLTDGR-----WAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRV----APELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 820 WEEGMKTIYYVRSKS 834


>gi|313115921|ref|ZP_07801348.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621685|gb|EFQ05213.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 847

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 289/928 (31%), Positives = 455/928 (49%), Gaps = 141/928 (15%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E+I+ +++ KRNG    F   KI  A+ KAF   +G+G     R  D I       +  +
Sbjct: 6   ERIE-MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMDEI-------LATV 54

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAP 140
           L +    + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R  +   + +  D  
Sbjct: 55  LNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDS 114

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L+ +  D T   ++   L+M  E  C                     G++E +   
Sbjct: 115 LDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTEDERAE 155

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           AL  ++  L   E P +  + AR L    R        +  Q+     +  LY +   RY
Sbjct: 156 ALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK--LRY 206

Query: 260 I-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EM 316
           + ++G+    +       ++    + L  ERD  F Y GL +L  RY +  + SR+  E 
Sbjct: 207 LTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQ-SRSRVPLET 265

Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           PQ  F+ +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+ T
Sbjct: 266 PQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDT 325

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ NDTA
Sbjct: 326 VPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTA 385

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +
Sbjct: 386 VAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEE 445

Query: 496 N--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           N  A W L  P E+       L D +G E+E   + Y    +   I+  R ++   + R 
Sbjct: 446 NIDAPWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRL 501

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE------- 595
           +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N       S+E       
Sbjct: 502 VLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGD 561

Query: 596 ----------ETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIE 644
                     E  VCNL S++L     N    D   +  T+ TA+R LDNVID+N + +E
Sbjct: 562 TIVVTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLE 617

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A+ +N  +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+E
Sbjct: 618 YARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALARE 677

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y+ F+GS W  G +  +  G  +E              W  L K V   GMRN+  +
Sbjct: 678 KGRYALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLL 723

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+APT++ + + G S  IDP                ++  F + E K             
Sbjct: 724 AVAPTSSTSILSGTSAGIDP----------------IMKKFFLEEKK------------- 754

Query: 825 KYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
               GS+  + R+  +L       +  A  ID  W + +A  RQ+ IDQAQS+NLY+ ++
Sbjct: 755 ----GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITND 808

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            S +++  +Y +AW  G+KT YY+RS++
Sbjct: 809 YSMRQVLRLYLEAWRAGVKTIYYVRSKA 836


>gi|160942849|ref|ZP_02090089.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445901|gb|EDP22904.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
          Length = 847

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 285/927 (30%), Positives = 451/927 (48%), Gaps = 139/927 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E+I+ +++ KRNG    F   KI  A+ KAF   +G+G     R  D I       +  +
Sbjct: 6   ERIE-MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMDEI-------LATV 54

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAP 140
           L +    + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R  +   + +  D  
Sbjct: 55  LNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDS 114

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L+ +  D T   ++   L+M  E  C                     G++E +   
Sbjct: 115 LDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTEDERAE 155

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           AL  ++  L   E P +  + AR L    R        +  Q+     +  LY +   RY
Sbjct: 156 ALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK--LRY 206

Query: 260 I-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMP 317
           + ++G+    +       ++    + L  ERD  F Y GL +L  RY +     + +E P
Sbjct: 207 LTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRAPLETP 266

Query: 318 QAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           Q  F+ +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+ TV
Sbjct: 267 QEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTV 326

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD L GI+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ NDTAV
Sbjct: 327 PDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAV 386

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +N
Sbjct: 387 AVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEEN 446

Query: 497 --AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
             A W L  P E+       L D +G E+E   + Y    +   I+  R ++   + R +
Sbjct: 447 IDAPWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRLV 502

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------------ 591
           L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N                  
Sbjct: 503 LRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDT 562

Query: 592 -----SSSEETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                +   E  VCNL S++L     N    D   +  T+ TA+R LDNVID+N + +E 
Sbjct: 563 IVVTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLEY 618

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ +N  +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+E+
Sbjct: 619 ARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREK 678

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y+ F+GS W  G +  +  G  +E              W  L K V   GMRN+  +A
Sbjct: 679 GRYALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLLA 724

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT++ + + G S  IDP                ++  F + E K              
Sbjct: 725 VAPTSSTSILSGTSAGIDP----------------IMKKFFLEEKK-------------- 754

Query: 826 YHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
              GS+  + R+  +L       +  A  ID  W + +A  RQ+ IDQAQS+NLY+ ++ 
Sbjct: 755 ---GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDY 809

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           S +++  +Y +AW  G+KT YY+RS++
Sbjct: 810 SMRQVLRLYLEAWRAGVKTIYYVRSKA 836


>gi|149182582|ref|ZP_01861053.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148849718|gb|EDL63897.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 746

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 256/757 (33%), Positives = 382/757 (50%), Gaps = 99/757 (13%)

Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   L+  LI ++   I  +EP +  V A   L KL R    +    P+K         
Sbjct: 45  VTAEQLDNMLILAAVERISSQEPEWTYVAADIYLRKLYRASAESRGTDPEKGYGS----- 99

Query: 252 YPEYFCRYIEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           + E   +  E G+   RLL +   D ++  L   +  ERD  F Y+G+  L +RY    +
Sbjct: 100 FYEMMAQLEEMGIYDTRLLQKYSRD-EIDSLERIINPERDGLFTYIGIVTLAERYLAKSH 158

Query: 311 -GSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            G  IE+PQ  FM +AM L   E E+++  +  E Y  LS+ +   +TPTL N+G  + Q
Sbjct: 159 AGHFIELPQERFMIIAMTLLADEPEEKRLTLIQEAYWALSNLYMTVATPTLANAGKSYGQ 218

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+ TV DDL  I+ +  + + L+K  GG+G     +R  G+ I G  G S G+IP+
Sbjct: 219 LSSCFIDTVEDDLRSIYDSNTDVSTLSKNGGGIGIYLGKIRSRGSDIKGFKGVSSGIIPW 278

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K  N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   +PD
Sbjct: 279 MKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFPFLDSKLNNGDERQRTHDLFTGVCLPD 338

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------VF---- 537
           LFM++V +   W LF P EV     + G   E   ++Y+ Q  +G  +      VF    
Sbjct: 339 LFMEQVEKRGDWYLFDPHEV---RKVMGFSLE---DHYDEQPGQGSFREKYWACVFHPEL 392

Query: 538 --RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             + + A+ L++ ++    ETG P++ ++D  N  +  QH G+++ SNLCTEIT N S+ 
Sbjct: 393 SHQTVPAIELFKSIMISQLETGTPYMFYRDTVNRFNANQHKGMIYCSNLCTEITQNMSAT 452

Query: 596 -------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                              +  VCNL S++L     +       L   I  AVR+LDNVI
Sbjct: 453 VMEEERVEDGTIITYKKPGDYVVCNLSSLSLAKAVQDG-----VLKEVISIAVRMLDNVI 507

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DIN   + +A+ +N  +R IGLG  G+   L L  I + S EA+E  D   E I+F  I 
Sbjct: 508 DINDIPVLQAQLTNERYRGIGLGTYGWHHLLALKGIKWESEEALEYCDSLYEDIAFFTIK 567

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+E+GAY  F GS W  G +         E RD  +        W ELK+ VK  
Sbjct: 568 ASAALAKEKGAYPYFTGSEWAAGSY--------FEKRDYTSPR------WLELKEEVKEH 613

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+AP+++ + I G + SIDP ++  Y  S    D+ +       +L     W
Sbjct: 614 GVRNGYLMAVAPSSSTSLIAGSTASIDPVFRLEY--SEEKKDYKI--PVTAPDLSPHTTW 669

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                       + TA+ ID  W I+  ++RQ+ IDQ+ S NLY
Sbjct: 670 ---------------------------YYKTAYNIDQHWSIKQNAKRQRHIDQSISFNLY 702

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + ++   K L  I+  AW  GLKTTYY+RS S   ++
Sbjct: 703 VRNDIKAKALLDIHLHAWKAGLKTTYYVRSTSNAEID 739


>gi|182419342|ref|ZP_02950594.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237666539|ref|ZP_04526524.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376673|gb|EDT74245.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237657738|gb|EEP55293.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 743

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 250/762 (32%), Positives = 382/762 (50%), Gaps = 101/762 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           DG+SE  +  +LI  +  L  + EPN+    ++    +L  EV     +     +  ++ 
Sbjct: 37  DGMSEKHIRKSLIQVALELTTDMEPNWQFAASKIYTYELYDEVR----ENRGLNSSEDLY 92

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
             Y ++  +  + G+  + + ++    D++ L   +K ERDF F Y G+ +L  RY +  
Sbjct: 93  KNYYDFISQLTDRGLYGKYILDNYTKEDILELEKTIKPERDFLFNYSGINLLSKRYLVQD 152

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            N + +E+PQ  FM +AM LA+ E +K KR   A  FY++LSS     +TPT+ N+    
Sbjct: 153 YNRNPVELPQQMFMGIAMHLAIPE-DKSKRVYWAKRFYDVLSSLKATMATPTMSNARKPF 211

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR LG+ I G  G S G+I
Sbjct: 212 YQLSSCFIDTVEDSLEGIYKSLDNFAQVSKFGGGMGIYMGKVRALGSSIRGFKGASGGII 271

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P++K+ NDTAVAV+Q G R G+V  +L+ WH D+ EFL +R N GDDR++ HD+      
Sbjct: 272 PWVKLFNDTAVAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVFPGLCY 331

Query: 486 PDLFMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFR 538
           PDLF K    N  + W +  P E+ +     L D YG E+E  Y  YE   D    K  R
Sbjct: 332 PDLFWKLAENNIDSDWYMMCPHEIKEIKGYSLEDFYGDEWEEKY--YECVNDERIEK--R 387

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET- 597
            +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLCTEI  N S  E  
Sbjct: 388 VMSVKDIVRLIIKSAAETGAPFAFYRDTVNKMNPNKHNGIIYSSNLCTEIMQNMSPMEIN 447

Query: 598 ----------------------AVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633
                                  VCNL S+ L  +   +  + DY      + T +R +D
Sbjct: 448 KSEIINEDGSCIVTQNIIPGDFVVCNLSSVVLGNIDVCSEEEVDY-----VVETQIRAMD 502

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +++  A+ +N  +RAIGLG  G+   L    I +   +  + ADE  E I+++
Sbjct: 503 NVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNRIHWTEEKHKDFADEVYERINYY 562

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS+++A+E+GAY+ FK S WD G              D   +       W  L+K +
Sbjct: 563 AVKASMKIAKEKGAYNLFKESDWDNG--------------DYFELRGYKDEKWCALRKEI 608

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  GMRN   +A+AP  + A I G S+ IDP                V+  F + E K  
Sbjct: 609 KENGMRNGYLLAVAPNGSTATIAGTSEGIDP----------------VMARFYLEEKK-- 650

Query: 814 DLWDEAMISDLKYHDGSI--GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                          GSI       + DD    +  A+ ID  W ++    RQ+ IDQ Q
Sbjct: 651 ---------------GSIIPKTAPNLNDDNYWYYNPAYNIDQAWSVQMNGIRQRHIDQGQ 695

Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           S NLY+ +  + +++  +Y +A   G+K+ YY+RS+S    E
Sbjct: 696 SFNLYITNNYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTE 737


>gi|229542077|ref|ZP_04431137.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
 gi|229326497|gb|EEN92172.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
          Length = 744

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 243/713 (34%), Positives = 362/713 (50%), Gaps = 86/713 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           R  L  +Y +  K  H++    Y  ++    + +E+G+ +  L +     ++  L   + 
Sbjct: 72  RIYLHKLYAEAAKNRHYDPTLKYGSFYDLIRQLVEKGIYSPKLLDKYTKQEIETLGRLID 131

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKR---AVEF 342
            E+D  F Y GL  L  RY        + E+PQ  +M +AM L +++ ++E R     E 
Sbjct: 132 PEKDLLFTYPGLYTLVTRYLASDFEKHVYELPQERWMVIAMYL-MQDEQQETRMEHVKEA 190

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  LS+ +   +TPTL N+G  H QLSSCF+ TV D L  I+ +  + A L+K  GG+G 
Sbjct: 191 YWALSNLYMTVATPTLANAGKTHGQLSSCFIDTVADSLQSIYDSNTDIAQLSKNGGGIGV 250

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
               +RG G+ I G  G S GV+P++K  N+TAV+V+Q G RKGA+  YL+ WH D+E+F
Sbjct: 251 YMGKIRGRGSAIKGFPGMSSGVVPWIKQLNNTAVSVDQLGTRKGAITVYLDVWHRDIEDF 310

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE 517
           LDL+ N GDDR R  D+ T   IPD FM++V +   W +F P EV +     L D Y +E
Sbjct: 311 LDLKLNNGDDRLRARDIYTGVCIPDYFMEQVEKRGDWYVFDPHEVKEVMGFALEDFYDEE 370

Query: 518 FEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                  E YE      +++  RK+ A+ + ++++    ETG P++ ++D  N ++P  H
Sbjct: 371 KGKGSWREKYE-ACIHADLRSKRKVPAIEIMKRIMRSQLETGAPFMFYRDEVNRQNPNSH 429

Query: 576 VGVVHSSNLCTEITLNSSSEET--------------------AVCNLGSINLLAHFANNQ 615
            G+++ SNLCTEI  N S  E                      VCNL SINL     +  
Sbjct: 430 KGIIYCSNLCTEIAQNQSPTELIEEWIKEENVIVKKYRSGDYVVCNLSSINLGKAVPDGV 489

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
                L   IR  VR+LD+VID+N   I++ + +N  +RA+GLG  G+   L L  I + 
Sbjct: 490 -----LERLIRIQVRMLDHVIDVNTLPIKQVQITNKKYRAVGLGTFGWHHLLALEGIEWE 544

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +  AVE AD+  E I+++AI +S+ELA+E+G+Y +F GS W  G +     G  +E    
Sbjct: 545 TEAAVEYADKLYENIAYYAIKSSMELAREKGSYPAFPGSKWSTGAY-FTGKGYTSE---- 599

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L + VK  G+RN   MA+AP AT + I G + SIDP +Q  Y++   
Sbjct: 600 ---------RWLALAEEVKKYGLRNGYLMAVAPNATTSIIAGSTASIDPVFQPYYMEEKK 650

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
              F V    L                     D    NI R          +A+++D  W
Sbjct: 651 DYRFPVTAPDL---------------------DHRTYNIYR---------RSAYKLDQRW 680

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +   + RQK IDQ+ S N Y+      + L  ++ QAW  GLKTTYY+RS S
Sbjct: 681 SVRQNAARQKHIDQSISFNFYVPYNIRAQVLLDLHLQAWKSGLKTTYYVRSTS 733


>gi|260591986|ref|ZP_05857444.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
 gi|260536270|gb|EEX18887.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
          Length = 840

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 282/921 (30%), Positives = 458/921 (49%), Gaps = 134/921 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    ++ +KI+ AI K+F++       + I+ ++I   + E  V +++  N 
Sbjct: 1   MDIIKRNGESERYNNNKIAIAIKKSFIST-----GKPIKDEEIAAMVAE--VEQIIIDNP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V  E+IQ+QVE  LM  GH+   + ++L+R +R++ R A +           +  M
Sbjct: 54  DQRTV--EEIQNQVEKHLMMHGHYDEAKNFILFRYQRNEQRKAIND----------IARM 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSR 207
            DD  L +       ++ + A    + V S + L E + N+    +S  +    LI ++ 
Sbjct: 102 ADDTELTT-------VLQDVAREYRERVYSMVTLQEKFANLCKPSMSHKEAIDTLIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF--CRYI-EEG 263
            L   E P +  ++AR L            Y+  QK    E +     ++   +Y+  EG
Sbjct: 155 ELTTPEAPAWEMISARIL-----------SYRAEQKIKKQEDEIGIDGFYNKLKYMTSEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
           +    + ++  + ++   A  +K ER+    Y GL +L  RY + +  G  IE  Q  ++
Sbjct: 204 LYGEYILQNYTEEEINEAATFIKEERNKLLNYSGLDLLLKRYVIKNYAGKAIERVQEMYL 263

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            +A+ LA+ E +KE R +     Y++LS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 264 GIALHLAMPE-QKENRLMWVHRIYDMLSKLEVTMATPTLSNARKPNHQLSSCFIDTVPDS 322

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+
Sbjct: 323 LDGIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVD 382

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--A 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +N   
Sbjct: 383 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMADENLDQ 442

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKML 550
            W LF P+E+       L D YG+E+E  Y +   +++  R      R IS   + R +L
Sbjct: 443 NWYLFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLTR------RVISIKDIIRLVL 496

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------- 597
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  ET             
Sbjct: 497 RSAVETGTPFTFNRDTVNRANPNHHKGMIYCSNLCTEIAQNMAPIETVSKTIETKDGETI 556

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S++L         D +++   + T VR LDNVI +N + +  A+
Sbjct: 557 VVTTTKPGEFVVCNLASLSLGRLPLE---DEEQMREKVATIVRALDNVISLNFYPVPYAE 613

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+
Sbjct: 614 ITNQKYRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRSAILASSNLAKEKGS 673

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G++  D  G  ++              W E++K V   GMRN+  +A+A
Sbjct: 674 YQYFEGSDWQTGLY-FDKRGYDSD-------------EWKEVRKTVALQGMRNAYLLAVA 719

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  +DP  +  +++         V      EL     W           
Sbjct: 720 PTSSTSIIAGTTAGLDPIMKRFFLEEKKGSMLPRV----APELSDETYW----------- 764

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++ +A+ I+  W I+++  RQ+ IDQAQS+NLY+ ++ + +++ 
Sbjct: 765 ----------------MYKSAYLINQKWSIKASGVRQRHIDQAQSMNLYITNDFTMRQVL 808

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  G+KT YY+RS+S
Sbjct: 809 DLYLLAWKSGVKTIYYVRSKS 829


>gi|227498393|ref|ZP_03928543.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903855|gb|EEH89773.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 760

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 251/802 (31%), Positives = 392/802 (48%), Gaps = 106/802 (13%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG     + ++ + ++  AC GL       +  ++     DG++   ++  LI   RT I
Sbjct: 9   DGHFEPLSVEKTKRMIAFACLGLDSCDPMELEMDSKLQFVDGMTTKQIQQTLI---RTAI 65

Query: 211 EK----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           EK                 P++  V AR  L  L +E    + ++ +   +     L   
Sbjct: 66  EKVIPSRHEGGGVPLQEMNPDWQFVAARLFLFDLYKEA--AIQRRYKAFGYGNFSNL--- 120

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                +++   A        + +L  L + +K +RD+ F Y GL++L DRY +   N   
Sbjct: 121 -IHMLVDKKKYADFFVTDYTEDELQELGDYIKPKRDYLFNYEGLKLLADRYLVRGFNKEV 179

Query: 314 IEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            E+PQ  FM +AM LAL E + K   A +FY+L+S      +TPTL N+GT   QLSSCF
Sbjct: 180 YELPQERFMAIAMHLALVEGKNKVAYAKKFYDLMSELKMTTATPTLANAGTPFHQLSSCF 239

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++++ N
Sbjct: 240 VAGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWVRLYN 299

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAV+Q G+RKG     L+ WH D  EF++LR N GDDRR+ HD+  +  +P+LFM+R
Sbjct: 300 DTAVAVDQLGRRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPSISVPNLFMER 359

Query: 493 VTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           + +   +TLF P EV+      L D Y  E + A+  +    ++        + A+ + +
Sbjct: 360 LIKRENFTLFDPHEVNTVMGFALEDFYDTEEDKAFTEHYLACEKDSRLHGISVPALEMMK 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---------------- 591
           K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N                
Sbjct: 420 KIMKSAVETGTPFIFFRDTVNEANPNKHAGMIYASNLCHEIAQNVGFTNLKKEILEDDGT 479

Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
               ++  +   CNL SINL       + D D L   I   VR+LDNVI IN   + +++
Sbjct: 480 ITTVTAPGDMVTCNLNSINL------GKIDEDFLEEQIALQVRMLDNVITINQTPVPESR 533

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +   +RAIGLG  G+   L    + + S E +  AD   E I+++AI AS+EL++E+GA
Sbjct: 534 LTCDKYRAIGLGTSGYHHYLVKHGLRWESKEHIAAADALFEKIAYYAIKASMELSKEKGA 593

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +FKGS WD G +     G  +E              W  L   V   GMRN   +A+A
Sbjct: 594 YPAFKGSEWDTGKY-FTRRGYTSE-------------KWQRLAADVHKYGMRNGYLLAVA 639

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT + +NI   +  IDP ++  +++    G FT   +    +L  +  W           
Sbjct: 640 PTGSTSNIANTTAGIDPIFKKFFIEEK-QGSFTPKTA---PDLNPKTFW----------- 684

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                           ++  A  ID  W I + + RQ+ IDQAQS NLY+  P  K  + 
Sbjct: 685 ----------------LYKEAHTIDQQWSIRANAARQRHIDQAQSFNLYI-TPRMKASEI 727

Query: 888 --IYRQAWLMGLKTTYYLRSRS 907
             +Y +A+  G+KT YY+R++S
Sbjct: 728 LNLYIEAYKQGIKTIYYVRNQS 749


>gi|304439120|ref|ZP_07399039.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372479|gb|EFM26066.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 840

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 293/926 (31%), Positives = 449/926 (48%), Gaps = 144/926 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KR+G V  FD  KIS AI K+++ +              I  +T++ V ++    K
Sbjct: 1   MNIRKRDGRVVDFDREKISTAIKKSYIGIMKPFED------SYIDKITDKIVEKVEDLYK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E IQD VE  L++     + + Y+ YR          +HSK D  +       
Sbjct: 55  DT-IPTVEQIQDLVELELIEEKEIDVVKSYITYR---------AAHSK-DRQVLRGFNEY 103

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIFSS 206
           ++D TL+S     +  +  +    L  + S      ++  K+M    S+ D    LI ++
Sbjct: 104 LEDDTLVSI----IRDVRNDYSRDLYPIESLFHKFSSFCKKDM----SQDDSRVMLIRAA 155

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREV------LTTVYKKPQKATHHEMQCLYPEYFCRY 259
             L  KE P++  + +RF    L  ++      + T Y+K +  T  EM  LY +Y    
Sbjct: 156 SELTTKEAPDWEYIASRFYRYDLELKINENYKGIDTFYEKIKNLT--EMN-LYGKYIL-- 210

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318
                      E+    D+  L  ++  ERD    Y  + +L  RY +  +  ++ E PQ
Sbjct: 211 -----------ENYTKEDIDKLEKEIVPERDKLLTYSSIDLLAKRYLIRSHDMKVLERPQ 259

Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             FM +AM LAL E + K + A   Y +LS      +TPT+ N+     QLSSCF+ TV 
Sbjct: 260 EMFMGIAMHLALPEGKNKVEWATRIYTVLSKLQVTVATPTMNNARKPFYQLSSCFIDTVS 319

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +L++ NDTAVA
Sbjct: 320 DTLEGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWLRLVNDTAVA 379

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496
           V+Q G R+G+   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF +    N 
Sbjct: 380 VDQLGVRQGSCAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVSYPDLFFRLAKNNI 439

Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            A W +F P E+       L D YG EFE  Y  YE   D    K  R IS   + R ++
Sbjct: 440 DADWYMFDPHEIMVKKGYCLEDYYGDEFEKKY--YECVHDANISK--RVISVKDMVRLII 495

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------ 598
             L ETG P+  F+D  N  +P +H G+++SSNLCTEI  N S+ E              
Sbjct: 496 KSLTETGTPFAFFRDAVNKMNPNKHKGMIYSSNLCTEIMQNMSAIEAVSQEIETEEGDTV 555

Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL S+ ++++   N  D +++   + TAVR LDNVID+N + +  AK
Sbjct: 556 VVTKTKPGDFVVCNLASL-VISNI--NLEDDEEVEYVVSTAVRGLDNVIDLNYYPLPYAK 612

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERG 706
            +N  +RAIGLG  G+  AL    I ++  E  +E AD   E ++++A+ AS E+A+E+G
Sbjct: 613 ITNSKYRAIGLGTSGYHHALIKEGIAFSDEEEHLEFADRVYEKLNYYAVKASNEIAKEKG 672

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           AY  FKGS WD G +                +       W++L+  +   GMRN   MA+
Sbjct: 673 AYEYFKGSDWDNGNY--------------FELRGYHGKEWEDLRASIHEHGMRNGYIMAV 718

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT + + I G + ++DP                V+  F + E K               
Sbjct: 719 APTGSTSIIAGTTAAVDP----------------VMKRFFLEEKK--------------- 747

Query: 827 HDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
             G+I  I R+  DL      ++  A EID   +I++   R + IDQ QS+NLY+  + +
Sbjct: 748 --GAI--IPRVAPDLNTRTFWLYEQAHEIDQSLIIKATGVRGRHIDQGQSVNLYITSDFT 803

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +++  +Y +A   GLK+ YY+RS+S
Sbjct: 804 MRQILNLYIRAMEEGLKSLYYVRSKS 829


>gi|15613064|ref|NP_241367.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10173114|dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus
           halodurans C-125]
          Length = 726

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 250/751 (33%), Positives = 374/751 (49%), Gaps = 95/751 (12%)

Query: 191 DGLSE-SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D LS+ + LE+  + +   +  ++P +  +TAR  LE+L   V      K Q+       
Sbjct: 26  DVLSQGASLESMRMKAMDEISAEQPEWTFITARIYLEELYNSV------KEQRGLAKPYT 79

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y E     +++G+  + L       ++  L   L  E+D  F Y+GL+ L DRY   +
Sbjct: 80  QFY-ELIEVLVDKGIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARL 138

Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP 366
            + + +E+PQ  FM +AM L  KE   ++ ++  E Y  LS+ +   +TPT  N+G    
Sbjct: 139 YDRTLMELPQERFMVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAVG 198

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCF+ TV D L GIF +  + A ++K  GGLG     +R  G+ I      S GV+P
Sbjct: 199 QLSSCFIDTVDDSLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLP 258

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++K  N+ AV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ TA  +P
Sbjct: 259 WMKQLNNVAVSVDQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLP 318

Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKV 536
           DLFM+ V     W LF P E+       L D Y ++     F   YE      D    +V
Sbjct: 319 DLFMEAVEARDNWYLFDPHEIRQKMGFSLEDSYDEQKGSGTFRERYEACVNNPDLSRTEV 378

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593
                A+ + ++++    ETG P++ ++D  N  +P +H G+V+ SNLCTEI  N S   
Sbjct: 379 ----PAIEIMKRIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTT 434

Query: 594 --SEET--------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
              E+T               VCNL S++L     +     D L   I   VR+LDNVID
Sbjct: 435 VVEEKTEDGKILITKQPGDYVVCNLSSLSLARVVED-----DVLERLIPIQVRMLDNVID 489

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++A+++N  +RAIGLG  G+   L    I + S EA+  ADE  E I++  I A
Sbjct: 490 VNRIEVKQAEQTNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQA 549

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S++LA+E+GAY  F GS W+ G +                  + +   W EL ++VK  G
Sbjct: 550 SMKLAEEKGAYPMFGGSDWETGEY--------------FERRQYTTDKWTELAEQVKEKG 595

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN   +A+AP AT A I G + SIDP +Q  YV+   +    V       +L     W 
Sbjct: 596 LRNGYLLAVAPNATTALIGGTTASIDPIFQKTYVEEKKNYRIPVT----APDLSPETTW- 650

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      + +A+ ID  W I     RQ+ +DQ+ S NLY+
Sbjct: 651 --------------------------YYKSAYHIDQTWSIRQNGARQRHVDQSISFNLYV 684

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
                 K+L  ++  AW  GLKTTYYLRS S
Sbjct: 685 SNTIRAKELLELHLLAWKEGLKTTYYLRSTS 715


>gi|168186577|ref|ZP_02621212.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295443|gb|EDS77576.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
          Length = 764

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 258/823 (31%), Positives = 407/823 (49%), Gaps = 116/823 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   +G     + ++ + +V  AC GL+      +  ++     D +S  +++  LI 
Sbjct: 3   IKVKKRNGEYEKLHVEKTKKMVSLACEGLEGCDPLELEIDSRIQFRDCMSTKEIQKILI- 61

Query: 205 SSRTLIEK-----------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
             +T IEK                   N+  V AR L   L +E       K  +  ++ 
Sbjct: 62  --QTAIEKVIYIDKNNHDNISSKKTNINWQYVAARLLAFDLYKEA------KINRDYNYF 113

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               +     R +  G+  + L E+  D ++  L++ ++ +RD  F Y GL++L DRY +
Sbjct: 114 GYGDFLYLVKRLVNIGLYGKYLIENYSDEEIKELSDYIEPKRDELFNYEGLKLLNDRYLI 173

Query: 308 H-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              NG  +E+PQ  FM +AM LA+ E + K   A +FY+L+S      +TPTL N+GT  
Sbjct: 174 KGFNGEILELPQERFMVIAMHLAIPEGKNKIYYAKKFYDLISKLKMTVATPTLGNAGTPF 233

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSCF++ V D+L+ I+   Q+ + ++K+ G LG     VR L + I G    S GVI
Sbjct: 234 YQLSSCFISVVGDNLWSIYDVNQKFSQVSKHGGALGIYIGKVRALNSEIRGHKNASGGVI 293

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P++K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  I
Sbjct: 294 PWIKLYNDTAVAVDQLGKRKGGAAITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSI 353

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE---NYERQADRGEIKVFRK--- 539
           PD+FM R+     W+LF P  V   H L G + E  ++   N E      E +  +    
Sbjct: 354 PDIFMTRLLNRESWSLFDPYMV---HKLMGYKLEDYFDDEDNKEFTKRYLECEANKNLQR 410

Query: 540 --ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---- 593
             +S + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S    
Sbjct: 411 DTVSCLDIMKKIMKSAVETGTPFIFFRDTVNRANPNKHRGMIYSSNLCHEIAQNMSESEL 470

Query: 594 -------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                              S +   CNL SINL      ++   ++L   I   +R+LDN
Sbjct: 471 ISEESTYKNGFNEVVSRVRSGDMVTCNLNSINL------SKVSREELKEAIPLQIRMLDN 524

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI +N   ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ +
Sbjct: 525 VISLNKLPVKESSITSDKYRAIGLGTSGYHQYLAKNRIKWESEEHIKEVDALFEDIAYES 584

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS+ELA+E+GAY  F+GS W  G +  +  G  +E              W +L+  V 
Sbjct: 585 IKASMELAKEKGAYPEFEGSEWQSGKY-FERRGYNSE-------------RWSKLRDDVA 630

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   MA+APT + +NI   +  IDP ++  +++    G FT   +    +L   +
Sbjct: 631 KYGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEK-KGSFTPKTA---PDLNNDN 686

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  I+  W I++ + RQK IDQ+QS N
Sbjct: 687 FW---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFN 719

Query: 875 LYLDEPSGKKLDFI--YRQAWLMGLKTTYYLRSRSATSVEKST 915
           LY+  P  K  D +  Y ++W  G+KT YY+R++S    E S+
Sbjct: 720 LYI-TPDIKAKDILDMYTESWRQGIKTIYYIRNKSIEMNECSS 761


>gi|160881348|ref|YP_001560316.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
 gi|160430014|gb|ABX43577.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
          Length = 764

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 257/792 (32%), Positives = 391/792 (49%), Gaps = 118/792 (14%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK---------------- 212
           AC GL+      +  +      DG+S  +++  L+   +T IEK                
Sbjct: 27  ACEGLEGCDPIELELDARIQFVDGMSTKEIQKMLV---QTAIEKVIHTKKDEFGNIMRET 83

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
             N+  V AR  +  L +E     + K      H     +       +EE +    L ++
Sbjct: 84  HTNWQYVAARLFVFDLYKEAAIERHYK------HFGYGDFLNLVNSLVEEELYGSYLTDA 137

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               ++  L   +K ERD+ F Y G+++L DRY +  +     E+PQ  FM +AM LA+ 
Sbjct: 138 YTQLEIKELGAYIKPERDYLFNYEGVKLLSDRYLVKGLKKEVFELPQERFMVIAMHLAIP 197

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E EK KR   A +FY+LLSS     +TPTL N+GT   QLSSCF++ V D+L+ I+   Q
Sbjct: 198 E-EKAKRMEYAKKFYDLLSSLQMTVATPTLANAGTPFYQLSSCFISVVGDNLWSIYDVNQ 256

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + + ++K+ G LG     +R L + I G    S GVIP++++ NDTA+AV+Q G+RKG  
Sbjct: 257 KFSSVSKHGGALGIYVGKIRALNSEIRGNKNASGGVIPWVRLYNDTAIAVDQLGRRKGGA 316

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              L+ WH D+ +FLDL+ N GDDRR+ HD+ TA  +P+LFM+R+ +   W+LF P  V+
Sbjct: 317 TITLDIWHADLYDFLDLKTNNGDDRRKAHDIFTALSVPNLFMERLERREEWSLFDPYLVN 376

Query: 509 -----DLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVAL--WRKMLTMLFETGHPW 560
                 L D Y    E+A   + +R     E K   +I+  AL   ++++    ETG P+
Sbjct: 377 KVMGFSLEDSYD---EVAENEFTKRYLACEECKELPRITVPALEVMKRIMKSAVETGAPF 433

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------T 597
           I F+D  N  +P +H G+++SSNLC EIT N S  E                        
Sbjct: 434 IFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELREELIQDESGAKVIITKIKPGDM 493

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNL SI+L       + +   LA  I   +R+LDNVI +N   + +A+ ++  +RAIG
Sbjct: 494 VTCNLNSISL------GRIEKKDLAVNIPLQIRMLDNVITLNQTPVAEARITSDKYRAIG 547

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG  G+   L    I + + + +E AD+  E I++ AI AS+ELA+E+G Y +F GS W+
Sbjct: 548 LGTSGYHHYLVNHGIGWETQKHLEEADDLFEEIAYQAIKASMELAKEKGKYEAFHGSEWE 607

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G +           R +   +R     W  L K V   GMRN    A+APT + +NI  
Sbjct: 608 TGEYF---------KRRDYTSDR-----WLALSKEVAEHGMRNGYITAVAPTGSTSNIAN 653

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  IDP ++  +++    G F    +    +L   + W                     
Sbjct: 654 TSAGIDPIFKRYFIEEK-KGSFIPKTA---PDLNTSNFW--------------------- 688

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLM 895
                 ++  A  ID  + I +   RQ+ IDQ+QS NLY+  P  K +D   +Y +AW  
Sbjct: 689 ------LYKEAHTIDQQFSIRACGIRQRHIDQSQSFNLYIT-PEYKAIDILNLYMEAWRK 741

Query: 896 GLKTTYYLRSRS 907
           GLKT YY+R++S
Sbjct: 742 GLKTIYYVRNQS 753


>gi|225164910|ref|ZP_03727127.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800487|gb|EEG18866.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 382

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/382 (49%), Positives = 255/382 (66%), Gaps = 12/382 (3%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           CTEITLN+S +ETAVCNLGSI L  H   +   D+ KL  TIRTAVR LDNVIDIN +  
Sbjct: 1   CTEITLNTSKDETAVCNLGSIILETHLHPDGSLDHAKLRDTIRTAVRALDNVIDINFYPT 60

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             A  SN  HR IGLG+MG  +AL+     +ASPEAVE  DE+ME I++HA  AS +LA 
Sbjct: 61  RAAGTSNRRHRPIGLGVMGLANALYQRGHAFASPEAVEFNDEAMEAIAYHAYEASSDLAA 120

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG YSS++GS W +G+ P D++ LL + R   + + R  +L W  L+ ++   GMRNSN
Sbjct: 121 ERGTYSSYEGSKWHRGILPQDTLDLLEQERGIPVDVPRGGKLDWAPLRAKIAAQGMRNSN 180

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPTATI+NI   S  I+P+Y+NL+VKSN+SG+F ++N +LV +LK R+LW + M+ 
Sbjct: 181 VLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFVILNPWLVRDLKARNLWTQDMLD 240

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           +LKY DG + +IE IP DL++ + TAF ID  W+I +A+RRQKWIDQ+QS+NL+L  P  
Sbjct: 241 NLKYFDGELSDIESIPADLREKYRTAFGIDHQWVIAAAARRQKWIDQSQSVNLWLATPDL 300

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---KGVDGKLNAV--PVTDPNSSTHS 937
           K L  +YR AW  GLKTTYYLR+  A+++EK+T+   K V G  +      + P    ++
Sbjct: 301 KTLSHMYRHAWHAGLKTTYYLRTLGASNIEKATVAVKKEVRGIASGTTPAASSPGVRAYT 360

Query: 938 LGIPSSCTSDT-----ECEVCQ 954
                +C+ +      ECE CQ
Sbjct: 361 AEEKLACSIEAMRNGGECEACQ 382


>gi|251780295|ref|ZP_04823215.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084610|gb|EES50500.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 741

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 251/764 (32%), Positives = 393/764 (51%), Gaps = 105/764 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM- 248
           DG+  +D+  +LI  S  L  + EPN+    +   + +L        Y K +K  + ++ 
Sbjct: 35  DGMDINDIRKSLIQVSLDLTSDIEPNWQYAASTIYIYEL--------YDKVRKNRNLDIN 86

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304
           + LY  Y+  +I+E  +  L  E +++     D++ L  ++K ERDF F Y G++++  R
Sbjct: 87  KNLYDNYY-EFIKELTERNLYGEYILENYSKEDVLELEKEIKPERDFLFNYSGIELVAKR 145

Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360
           Y +   N   IE+PQ  FM +AM LA+ E  KEKR   A  FYN+LS      +TPT+ N
Sbjct: 146 YLVQDFNRKVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     +R LG+ I G  G 
Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL +R N GDDR++ HD+ 
Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324

Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532
                PDLF K   +N    W +  P E+ +     L D YG+E+E  Y  +E  + DR 
Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTKGYSLEDFYGEEWEAKY--FECVEDDRI 382

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E    R I    L R ++    ETG P+  F+D  N  +P +H G+++SSNLCTEI  N 
Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDSANKMNPNKHNGMIYSSNLCTEIMQNM 439

Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           S+ +                         VCNL S+ +L +   +  + D+L   + T +
Sbjct: 440 SAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDDELEYVVETQI 496

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R +DNVID+N +++  A+ +N  +R IGLG  G+   L    I +   +     D+  E 
Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKKYRGIGLGTSGYHHMLANNKIHWTEEKHRIFVDKVYER 556

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++++I AS+ L++E+G Y  F+GS WD G +         E+RD       +   W +L
Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+ VK+ GMRN   +A+AP  + A I G S+ IDP     Y++       +++     N 
Sbjct: 603 KESVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L + + W                            + TA+ ++  W +E    RQ+ IDQ
Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGVRQRHIDQ 691

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            QS NLY+  + + +++  +Y +A   G+K+ YY+RS+S    E
Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735


>gi|188590737|ref|YP_001919719.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501018|gb|ACD54154.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 741

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 250/764 (32%), Positives = 393/764 (51%), Gaps = 105/764 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM- 248
           DG+  +D+  +LI  S  L  + EPN+    +   + +L        Y K +K  + ++ 
Sbjct: 35  DGMDINDIRKSLIQVSLDLTSDIEPNWQYAASTIYMYEL--------YDKVRKNRNLDIS 86

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304
           + LY  Y+  +I+E  +  L  E +++     D++ L  ++K ERDF F Y G++++  R
Sbjct: 87  KNLYDNYY-EFIKELTERNLYGEYILENYSKEDVLELEKEIKPERDFLFNYSGIELVAKR 145

Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360
           Y +   N   IE+PQ  FM +AM LA+ E  KEKR   A  FYN+LS      +TPT+ N
Sbjct: 146 YLVQDFNRKVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     +R LG+ I G  G 
Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL +R N GDDR++ HD+ 
Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324

Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532
                PDLF K   +N    W +  P E+ +     L D YG+E+E  Y  +E  + DR 
Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTKGYCLEDFYGEEWEAKY--FECVEDDRI 382

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E    R I    L R ++    ETG P+  F+D  N  +P +H G+++SSNLCTEI  N 
Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDSANKMNPNKHNGMIYSSNLCTEIMQNM 439

Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           S+ +                         VCNL S+ +L +   +  + ++L   + T +
Sbjct: 440 SAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDEELEYVVETQI 496

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R +DNVID+N +++  A+ +N  +R IGLG  G+   L    I +   +     D+  E 
Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGYHHMLANNKIHWTEEKHRTFVDKVYER 556

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++++I AS+ L++E+G Y  F+GS WD G +         E+RD       +   W +L
Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+ VK+ GMRN   +A+AP  + A I G S+ IDP     Y++       +++     N 
Sbjct: 603 KESVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L + + W                            + TA+ ++  W +E    RQ+ IDQ
Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGVRQRHIDQ 691

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            QS NLY+  + + +++  +Y +A   G+K+ YY+RS+S    E
Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735


>gi|187933383|ref|YP_001884519.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721536|gb|ACD22757.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 741

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 250/764 (32%), Positives = 392/764 (51%), Gaps = 105/764 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           DG+  +D+  +LI  S  L  + EPN+    +   + +L        Y K +K  + +++
Sbjct: 35  DGMDINDIRKSLIQVSLDLTSDMEPNWQYSASTVYIYEL--------YDKVRKNRNLDVK 86

Query: 250 -CLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDR 304
             LY  Y+  +I+E  +     E +++     D++ L  ++K ERDF F Y G+ ++  R
Sbjct: 87  KNLYDNYY-EFIKELTEKNFYGEYILENYSKEDILELEKEIKPERDFLFNYSGIDLVTKR 145

Query: 305 YFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFN 360
           Y +   N S IE+PQ  FM +AM LA+ E  KEKR   A  FYN+LS      +TPT+ N
Sbjct: 146 YLVQDFNRSVIELPQQMFMGIAMHLAIPEV-KEKRVYWAKRFYNVLSELKATMATPTMSN 204

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     +R LG+ I G  G 
Sbjct: 205 ARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKVSKFGGGMGIYIGKIRSLGSPIRGFKGA 264

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL +R N GDDR++ HD+ 
Sbjct: 265 SGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDDRKKAHDVF 324

Query: 481 TANWIPDLFMKRVTQNA--GWTLFSPDEVSD-----LHDLYGKEFEIAYENYE-RQADRG 532
                PDLF K   +N    W +  P E+ +     L D YG+E+E  Y  +E  + DR 
Sbjct: 325 PGVCYPDLFWKLAEENVDNDWYMMCPHEIKNAKGYSLEDFYGEEWETKY--FECVEDDRI 382

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E    R I    L R ++    ETG P+  F+D  N  +P +H G+++SSNLCTEI  N 
Sbjct: 383 EK---RSIKIKDLVRLIIKSAAETGAPFAFFRDNANKMNPNKHKGMIYSSNLCTEIMQNM 439

Query: 593 SSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           S+ +                         VCNL S+ +L +   +  + ++L   + T +
Sbjct: 440 SAMKVNGDTIIKENDKYNVVQNIEAGDFVVCNLSSL-VLGNI--DVLNDEELECVVETQI 496

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R +DNVID+N +++  A+ +N  +R IGLG  G+   L    I +   +     D+  E 
Sbjct: 497 RAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGYHHMLANNKIHWTEEKHRTFVDKVYEK 556

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++++I AS+ L++E+G Y  F+GS WD G +         E+RD       +   W +L
Sbjct: 557 INYYSIKASMNLSKEKGKYELFEGSDWDNGNY--------FELRD------YNDEKWIDL 602

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+ VK+ GMRN   +A+AP  + A I G S+ IDP     Y++       +++     N 
Sbjct: 603 KQEVKSFGMRNGYLIAVAPNGSTATIAGTSEGIDPIMARFYLEEKKG---SIIPKTAPN- 658

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L + + W                            + TA+ ++  W +E    RQ+ IDQ
Sbjct: 659 LSEDNYW---------------------------YYNTAYNLEQGWCVEMNGIRQRHIDQ 691

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            QS NLY+  + + +++  +Y +A   G+K+ YY+RS+S    E
Sbjct: 692 GQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYYVRSKSLEVTE 735


>gi|150015086|ref|YP_001307340.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901551|gb|ABR32384.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 743

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 244/740 (32%), Positives = 374/740 (50%), Gaps = 96/740 (12%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EPN+  V AR    +L   V ++   +  K  + +    Y E+     E G+    + ++
Sbjct: 60  EPNWQYVAARAYTYELYDRVRSSRNLEDDKNLYQD----YYEFIESLTERGLYGEYILKN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D++ L  D+K ERDF F Y G+ +L  RY +   N S IE+PQ  FM +AM LA+ 
Sbjct: 116 YSREDILELEKDIKPERDFLFNYSGINLLASRYLVQDYNRSPIELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           E E+ +   A  FY++LSS     +TPT+ N+     QLSSCF+ +V D L GI+ +L  
Sbjct: 176 EKEENRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDSVEDSLEGIYKSLDN 235

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V 
Sbjct: 236 FAKVSKFGGGMGIYMGKIRALGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVA 295

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN---AGWTLFSPDE 506
            +L+ WH D+ EFL +R N GDDR++ HD+      PDLF  R+ +N   A W +  P E
Sbjct: 296 IWLDAWHKDIPEFLQIRTNNGDDRKKAHDVFPGICYPDLFW-RLAENDIDANWHMMCPHE 354

Query: 507 VSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           + +     L D YG+++E  Y  YE  +D    K  R +S   L R ++    ETG P+ 
Sbjct: 355 IKNIKGYALEDFYGEQWEEKY--YECVSDERIEK--RVMSVKDLVRLIIKSAVETGAPFA 410

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETA----------- 598
            ++D  N  +P +H G+++SSNLCTEI  N            S  +E A           
Sbjct: 411 FYRDMTNKMNPNKHNGMIYSSNLCTEIMQNMSPMKIQKSQILSDKDEYAVVEKIIPGDFV 470

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL S+ L      N    +++   + T +R +DNVID+N +++  A+ +N  +RAIGL
Sbjct: 471 VCNLSSVVLGNIDVCND---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGL 527

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G  G+   L    I +   E     D+  E I+++AI AS+ +++E+G Y  FKGS WD 
Sbjct: 528 GTSGYHHMLVNNKIHWTEEEHKSFVDKIYEKINYYAIKASMNISKEKGFYELFKGSDWDT 587

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +                +   +   W+ELK+ V   G RN   +A+AP  + A I G 
Sbjct: 588 GEY--------------FRLRNYNSAKWNELKELVHEFGTRNGYLIAVAPNGSTATIAGT 633

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--GNIER 836
           ++ IDP                ++  F + E K                 GSI       
Sbjct: 634 TEGIDP----------------IMARFYLEEKK-----------------GSIIPKTAPN 660

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
           + +D    + +A+ I+ MW ++    RQ+ IDQ QS NLY+    + +++  +Y +A   
Sbjct: 661 LSEDNYWYYNSAYNIEQMWCVKMNGIRQRHIDQGQSFNLYITSSYTMRQIMNLYIEACKC 720

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+K+ YY+RS+S    E  T
Sbjct: 721 GVKSIYYVRSKSLEVTECET 740


>gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca]
          Length = 500

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 287/475 (60%), Gaps = 17/475 (3%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  
Sbjct: 1   RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +
Sbjct: 61  PNECPGLDEVWGEEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLY 115

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLA 622
           KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA
Sbjct: 116 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLA 175

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +
Sbjct: 176 EVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 235

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +            T 
Sbjct: 236 NKQIFETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTP----------TD 285

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +V
Sbjct: 286 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 345

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ 
Sbjct: 346 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 405

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 406 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 460


>gi|190574753|ref|YP_001972598.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia K279a]
 gi|190012675|emb|CAQ46303.1| putative ribonucleoside-diphosphate reductase 2 alpha chain
           [Stenotrophomonas maltophilia K279a]
          Length = 828

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 259/801 (32%), Positives = 389/801 (48%), Gaps = 114/801 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           + F ++RL+  ++   +     DVS    + +        +S  DL   LI  + + ++ 
Sbjct: 79  LPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRVDL 138

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
             P + +  AR  L +L        YK+  +   +++   Y  Y    ++E +  R ++ 
Sbjct: 139 VAPEWEQFAARIYLRRL--------YKRASRNRFYDVGLKYGSYVG--LQESLADRGIYS 188

Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323
           +  D    Y   +L+        ERD  F Y GL +L  RY        + E+PQ  ++ 
Sbjct: 189 N--DILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 246

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L
Sbjct: 247 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 306

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q
Sbjct: 307 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQ 366

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V + A W 
Sbjct: 367 LGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 426

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV------------FRKISAVALWRK 548
           LF P EV      Y ++F      Y+ +   G  ++             R + A+ L+++
Sbjct: 427 LFDPHEVKQAKGWYLQDF------YDEKRGAGSFRLRYAELVADERISRRTVKAIDLFKR 480

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593
           ++    ETG+P++ ++D  N R+P +H G+++SSNLCTEI  N S               
Sbjct: 481 IMLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIV 540

Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
               + +  VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A 
Sbjct: 541 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 600

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RAIGLG  G+   L    I + SP+A E+AD   E I+F  I AS +LA+E+G+
Sbjct: 601 ITNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEELADRLYERINFLTIQASAQLAKEKGS 660

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F GS W  G +  D        RD       S   WD L + V T G+RN   +A+A
Sbjct: 661 YPMFAGSDWHNGRYFRD--------RD------YSGAAWDSLAREVATHGLRNGWLLAVA 706

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + A I G + SIDP Y   Y +        V    L  E      W         Y 
Sbjct: 707 PNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP-------YYE 754

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK 884
            G                  A+++D    +   +RRQ+ +DQ+ S NLY+  PS      
Sbjct: 755 KG------------------AYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAST 794

Query: 885 LDFIYRQAWLMGLKTTYYLRS 905
           L  ++  AW  GLKTTYY+RS
Sbjct: 795 LLELHLSAWREGLKTTYYVRS 815


>gi|294501622|ref|YP_003565322.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium QM B1551]
 gi|294351559|gb|ADE71888.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium QM B1551]
          Length = 747

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 245/770 (31%), Positives = 389/770 (50%), Gaps = 98/770 (12%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV- 236
           K++ + T K   + +++  +   LI ++   I  +EP++  V A   L +L R+      
Sbjct: 35  KVIQTVTVK---ENMTDEKVANVLILAALERISMEEPDWTYVAADVYLNELYRKAADNRG 91

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
           Y K +K         + +   +  + G+  + L ++  + ++  +A+ +  ERD  F Y+
Sbjct: 92  YDKKEKYGS------FYQLIQKLTKIGIYNKQLLKTYTEEEINEIASVIIPERDRLFTYI 145

Query: 297 GLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMC 353
           GL  L DRY    +  R+ E+PQ  F+ +AM L  +E ++ + A+  E Y  LSS +   
Sbjct: 146 GLLTLADRYLATSHDKRVYELPQERFLIIAMTLMSQEKKENRTALVKEAYWALSSLYMTV 205

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPTL N+G  + QLSSCF+ T+ D L GI+ +  + A L+K  GG+G     +R  G+ 
Sbjct: 206 ATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDSNTDLATLSKNGGGIGVYLGHIRSRGSD 265

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G  G S G IP++K  N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD R N GD+R
Sbjct: 266 IKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDARLNNGDER 325

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEIAYE 523
           +RTHD+ T   +PDLFM++V     W LF P EV       L D Y +E     F   Y 
Sbjct: 326 QRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHEVRTLMGYSLEDFYDEEEGSGSFRTRYA 385

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E      + A+ ++++++    ETG P++ ++D  N  +  +H G+++ SN
Sbjct: 386 ----ECVNNEQLSRETVPAIEIFKRIMLSQLETGTPYMFYRDTVNRANQNRHEGIIYCSN 441

Query: 584 LCTEITLNSS----SEET---------------AVCNLGSINLLAHFANNQFDYDKLAST 624
           LCTEIT N S    +EE                 VCNL SINL           D L   
Sbjct: 442 LCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCNLSSINLARAVTE-----DVLERL 496

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVI++N   + +AK +N  +RA+GLG  G+   L L  I + + EAV   D
Sbjct: 497 IPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTFGWNHLLALKKIAWETDEAVAYCD 556

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E  E I++  + AS+ LA+E+GAY  FKGS ++ G +                  + +  
Sbjct: 557 ELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY--------------FETRKYTSE 602

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL+  V++ G+RN   MA+AP ++ + I G + SIDP ++  Y +   +    V   
Sbjct: 603 AWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTASIDPIFRKFYSEEKKNYKIPVT-- 660

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               +L     W                            + + + ID  W I+  ++RQ
Sbjct: 661 --APDLSPATNW---------------------------YYKSVYLIDQHWSIKQNAKRQ 691

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           + IDQ+ S NLY+ ++   K+L  ++  AW   LKTTYY+RS S+  +E+
Sbjct: 692 RHIDQSISFNLYVQNDIRAKELLDLHMTAWKEKLKTTYYVRSTSSEVIEE 741


>gi|288554978|ref|YP_003426913.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288546138|gb|ADC50021.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 723

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 251/729 (34%), Positives = 369/729 (50%), Gaps = 93/729 (12%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           +EP++  V A   +  LR ++      +P+      +   +PE+    IE+G+    L  
Sbjct: 44  EEPHWTYVAAACYINHLREQIAEQRGVEPKV-----LSASFPEFLKAQIEKGIYDGRLDS 98

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330
              D +L  LA  L+  RD  F Y+G++ L DRY     N   +E+PQ  +M +AM L  
Sbjct: 99  YSTD-ELYELALTLEPARDQKFTYIGIKTLADRYLAKDFNDQIVELPQERWMVIAMTLMS 157

Query: 331 KETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +E    +  +  E Y  LS  +   +TPT+ N+G    QLSSCF+ TV DDL  IF +  
Sbjct: 158 EENRGSRLELVKEAYWALSHLYMTVATPTMSNAGKVGGQLSSCFIDTVEDDLRSIFDSCT 217

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A ++K  GGLG     +R  G+ I G    S GVIP++K  N+ AV+V+Q G+R+GA+
Sbjct: 218 DAATVSKNGGGLGMYLGKIRARGSSIRGFKNVSSGVIPWMKQLNNVAVSVDQLGQRQGAI 277

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ WH D+  FLD + N GD+R+RTHD+ TA  +PDLFM+ V +   W LF P EV 
Sbjct: 278 AVYLDVWHKDIFAFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEKRDTWYLFDPHEVR 337

Query: 509 -----DLHDLYGK-----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                 L D Y +     EF    + YE+ A   E+    +I A+ + ++++    ETG 
Sbjct: 338 VKMGFSLEDFYDEKKGDGEFR---KRYEQCAANDELSR-TEIPAIEVMKRIMLSQLETGS 393

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EET---------------AV 599
           P++ ++D  N  +P +H G+++ SNLCTEI  N S+    EET                V
Sbjct: 394 PFMFYRDTANRLNPNKHKGMIYGSNLCTEIMQNMSATTVVEETLEDDTISIKKQPGDYVV 453

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S++L   F++     D +   ++  VR+LDNVID N   +++A+K+N  +RAIGLG
Sbjct: 454 CNLSSLSLAQVFSD-----DVVERVVKIQVRMLDNVIDQNSIGVKQAEKTNKMYRAIGLG 508

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+   L    I + S E+V   +   E I+  AI AS ELA E+GAY  ++GS W  G
Sbjct: 509 TYGWHHHLAKRGIAWESEESVWEVERVYERINQAAIKASAELAAEKGAYPHYEGSDWQTG 568

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F        +E   E A        WDE++  +   GMRN   MA+AP AT + I G +
Sbjct: 569 EF-------FSERGYEGA-------EWDEIRSVISKHGMRNGYVMAVAPNATTSLIAGST 614

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SIDP +Q  YV+   +    VV      +L  R  W                       
Sbjct: 615 ASIDPLFQKYYVEEKKNYRIPVV----APDLDARTTW----------------------- 647

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                +  A  +D  W I   + RQ+ +DQ  S NLY+ +    K+L  ++  AW  GLK
Sbjct: 648 ----YYKPAHLVDQTWSIRQNAARQRHVDQGISFNLYVPNNVKAKELLDLHLLAWKEGLK 703

Query: 899 TTYYLRSRS 907
           TTYY+RS S
Sbjct: 704 TTYYVRSTS 712


>gi|295706970|ref|YP_003600045.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium DSM 319]
 gi|294804629|gb|ADF41695.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium DSM 319]
          Length = 747

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 246/773 (31%), Positives = 392/773 (50%), Gaps = 104/773 (13%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVY 237
           K++ + T K   + +++  +   LI ++   I  +EP++  V A   L +L        Y
Sbjct: 35  KVIQTVTVK---ENMTDEKVANVLILAALERISMEEPDWTYVAADVYLNEL--------Y 83

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEE----GVKARLLHESMMDFDLVYLANDLKYERDFAF 293
           +K      ++ +  Y  ++ + I+E    G+  + L ++  + ++  +A+ +  ERD  F
Sbjct: 84  RKAGDNRGYDKKEKYGSFY-QLIQELTKIGIYNKQLLKTYTEEEINEIASVIIPERDRLF 142

Query: 294 EYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFH 350
            Y+GL  L DRY    +  R+ E+PQ  F+ +AM L  +E ++ + A+  E Y  LSS +
Sbjct: 143 TYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTLMSQEKKESRTALVKEAYWALSSLY 202

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G  + QLSSCF+ T+ D L GI+ +  + A L+K  GG+G     +R  
Sbjct: 203 MTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDSNTDLATLSKNGGGIGVYLGHIRSR 262

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G  G S G IP++K  N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD R N G
Sbjct: 263 GSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHKDIFSFLDARLNNG 322

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FEI 520
           D+R+RTHD+ T   +PDLFM++V     W LF P EV       L D Y +E     F  
Sbjct: 323 DERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHEVRTLMGYSLEDFYDEEEGSGSFRT 382

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y     +    E      + A+ ++++++    ETG P++ ++D  N  +  +H G+++
Sbjct: 383 RYA----ECVNNEQLSRETVPAIEIFKRIMLSQLETGTPYMFYRDTVNRANQNRHEGMIY 438

Query: 581 SSNLCTEITLNSS----SEET---------------AVCNLGSINLLAHFANNQFDYDKL 621
            SNLCTEIT N S    +EE                 VCNL SINL           D L
Sbjct: 439 CSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCNLSSINLARAVTE-----DVL 493

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   VR+LDNVI++N   + +AK +N  +RA+GLG  G+   L L  I + + EAV 
Sbjct: 494 ERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTFGWNHLLALKKIAWETDEAVA 553

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             DE  E I++  + AS+ LA+E+GAY  FKGS ++ G +                  + 
Sbjct: 554 YCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY--------------FETRKY 599

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W EL+  V++ G+RN   MA+AP ++ + I G + SIDP ++  Y +   +    V
Sbjct: 600 TSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTASIDPIFRKFYSEEKKNYKIPV 659

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                  +L     W                            + + + ID  W I+  +
Sbjct: 660 T----APDLSPATNW---------------------------YYKSVYLIDQHWSIKQNA 688

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           +RQ+ IDQ+ S NLY+ ++   K+L  ++  AW   LKTTYY+RS S+  +E+
Sbjct: 689 KRQRHIDQSISFNLYVQNDIRAKELLDLHMAAWKEKLKTTYYVRSTSSEVIEE 741


>gi|254524235|ref|ZP_05136290.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721826|gb|EED40351.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 787

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 256/802 (31%), Positives = 389/802 (48%), Gaps = 116/802 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           + F+++RL+  ++   +     DVS    + +        LS  DL   LI  + + ++ 
Sbjct: 38  LPFDAERLQRSIDTVHAEFPQLDVSDYRRVVQAMVERKPSLSADDLVDLLIREAESRVDL 97

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
             P + +  AR  L +L        YK+  +   +++   Y  Y    ++E +  R ++ 
Sbjct: 98  VAPEWEQFAARIYLRRL--------YKRASRNRFYDVSLKYGSYVG--LQESLADRGIYS 147

Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323
           +  D    Y   +L+        ERD  F Y GL +L  RY        + E+PQ  ++ 
Sbjct: 148 N--DILRCYSKEELQQAGEMIEPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 205

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L
Sbjct: 206 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 265

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q
Sbjct: 266 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQ 325

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGAV  YL+ WH D+E FLDLR N GD R R HD+ T+  +PDLFM+ V + A W 
Sbjct: 326 LGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 385

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKISAVALWRK 548
           LF P EV      Y ++F      Y+ +   G  +              R + A+ L+++
Sbjct: 386 LFDPHEVKSAKGWYLQDF------YDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKR 439

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593
           ++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S               
Sbjct: 440 IMLSQLETGNPFLFYRDEVNRKNPNKHAGMVYSSNLCTEILQNMSPTRMIQEIVSGDQIV 499

Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
               + +  VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A 
Sbjct: 500 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 559

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RAIGLG  G+   L    I + SP+A ++AD   E I+F  I AS +LA+E+G+
Sbjct: 560 ITNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEQLADRLYERINFLTIQASAQLAKEKGS 619

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F GS W  G +  D                 S   WD L + V T G+RN   +A+A
Sbjct: 620 YPMFAGSDWHNGRYFSD--------------RGYSGADWDSLAREVATHGLRNGWLLAVA 665

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + A I G + SIDP Y   Y +                              D +  
Sbjct: 666 PNMSTAQIAGSTASIDPIYSAFYYEEK---------------------------KDFRRP 698

Query: 828 DGSIG-NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK 883
             + G ++E  P         A+++D    +   +RRQ+ +DQ+ S NLY+  PS     
Sbjct: 699 VAAPGLSLETWP----YYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAS 752

Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905
            L  ++  AW  GLKTTYY+RS
Sbjct: 753 TLLELHLSAWREGLKTTYYVRS 774


>gi|299822181|ref|ZP_07054067.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
 gi|299815710|gb|EFI82948.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
          Length = 758

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 258/735 (35%), Positives = 369/735 (50%), Gaps = 108/735 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 76  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYIGLQESLGERGIYSGNIL 127

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    +L+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 128 KNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 186

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
              E  KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 187 MQNEG-KEKRMELVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 245

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 246 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 305

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 306 GAISVYLDVFHKDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDVFMEAVERRGEWYLFDPH 365

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553
           EV D    Y ++F      Y+ +   G  +           + +KI  A+ + ++++   
Sbjct: 366 EVHDKKGWYLQDF------YDEKKGEGTFREKYDELVADETISKKIVKAIDIAKRIMLSQ 419

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------- 597
            ETG+P++ ++D  N  +P +H G ++SSNLCTEI  N S+                   
Sbjct: 420 LETGNPFMFYRDEVNRMNPNKHEGRIYSSNLCTEIMQNMSATRVIHEIISGDQIVITKKA 479

Query: 598 ---AVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
               VCNL SINL  A  A ++     L+  I   VR+LDNVID+N   + +A  +N  +
Sbjct: 480 GDFVVCNLSSINLGRAVLAEDE---STLSRLIDVEVRMLDNVIDLNELPVPQATITNKKY 536

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 537 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEKINYLAIQASNKLAQEKGAYKVFKG 596

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +         E RD       S   W EL  +V   GMRN+  MA+AP  + A
Sbjct: 597 SDWETGEY--------FERRD------YSTEAWKELADKVAASGMRNAYLMAVAPNMSTA 642

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +                  +++D     +  DL        +
Sbjct: 643 QIAGSTASIDPIYNAFYYE------------------EKKDYRRPVIAPDL--------S 676

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYR 890
           +   P         A+++D    +   +RRQ+ +DQ+ S NLY+  PSG    KL  ++ 
Sbjct: 677 LNTYP----YYEKGAYKVDQFASVRQNARRQRHVDQSLSFNLYV--PSGIKASKLLELHM 730

Query: 891 QAWLMGLKTTYYLRS 905
            AW  GLKTTYY+RS
Sbjct: 731 TAWREGLKTTYYVRS 745


>gi|210631891|ref|ZP_03297103.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
 gi|210159816|gb|EEA90787.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
          Length = 919

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 289/963 (30%), Positives = 439/963 (45%), Gaps = 145/963 (15%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-------------- 69
           E+     + KR+G    ++P KI  A+ +AF  V G    +    Q              
Sbjct: 12  ERTAAGVIRKRDGRTEPYEPGKIIEAMRRAFADVYGDAGWQRSGTQAAANDQRPDAPAGP 71

Query: 70  --DIIKNLTEQTVTRLLQHNKSAL---------------IVHIEDIQDQVECSLMQSGHH 112
              + +  +E    R     +  L               I  +EDIQD VE +LM+ GH 
Sbjct: 72  DGQLSRERSEAHTERPAADQEDELLALLAMVERSMSTSAIQSVEDIQDLVERALMERGHF 131

Query: 113 KITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
           ++ + Y+LYR  R++ RAA+    SD  +     ++            R++    E    
Sbjct: 132 EVAKNYILYRHHRAEKRAARLELASDVAVDGVDDVL-----------ARIQRDFPEEAYD 180

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRRE 231
           L  +S++     T+    +G  E     ALI ++  L  +E P +  + AR       R+
Sbjct: 181 LAVLSARF---RTFTG--EGQDEPARLEALIRAAIELTSQEAPRWEFIAARLRDFAFARD 235

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYI----EEGVKARLLHESMMDFDLVYLANDLKY 287
           +                  L  E F + I    ++G+    +  +    +L   A  +  
Sbjct: 236 LAAA------------RSALGIETFSQLIHHLTDQGLYGAYILAAYSGAELDQAATYMDP 283

Query: 288 ERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYN 344
            RD  F Y GL +L  RY +H +  + +E PQ  F+ +A+ LA+ E   ++ A    FY+
Sbjct: 284 SRDELFTYSGLDLLIRRYVIHGHDHTPLESPQEMFLGIALHLAMNEPPAQRLAWVRRFYD 343

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +LS      +TPT+ N+     QLSSCF+ TVPD L GI+ ++   A ++KY GG+G   
Sbjct: 344 MLSRLEVTMATPTMSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYL 403

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR  G  I G  G + GVI +++V NDTAVAV+Q G R+GAV  YL+ WH D+ EFL+
Sbjct: 404 GKVRATGGSIRGFEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLN 463

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSPDEV-----SDLHDLYGKE 517
           LR N GDDR + HD+  A   PDLF  M   + +  W L  P ++       L D YG+E
Sbjct: 464 LRTNNGDDRMKAHDVFPAVCYPDLFWRMAEESLDQQWHLMCPHDILTIKGYALEDSYGEE 523

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +E  Y    R          R I    L R +L    ETG P+   +D  N  +P  H G
Sbjct: 524 WERRY----RDCVADPRIPTRTILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNSHEG 579

Query: 578 VVHSSNLCTEITLNSSSEET-----------------------AVCNLGSINLLAHFANN 614
           V++ SNLCTEI  N+S+ +                         VCNL S++L       
Sbjct: 580 VIYCSNLCTEIAQNTSAIQEVTREVRTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE- 638

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D   +   I TAVR LDNVID+N + +  A+ +NH +R+IGLG+ G+   L    + +
Sbjct: 639 --DDAAMGRVIETAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGVSW 696

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIG 727
            S E + + DE  E I++HAI AS  LA+ERGA   F+GS W  G +       P+   G
Sbjct: 697 ESEEHLRLVDEVFERINYHAICASERLAEERGANGVFEGSEWQSGAYFAKRGYCPLPCDG 756

Query: 728 LLAEVRDELAMNRTS--RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              E    +     +     W EL  RV   G+RN+  +A+APT++ + + G +  IDP 
Sbjct: 757 SEPEAASAVVTREGAIGSKRWGELAARVAEHGVRNAYLLAVAPTSSTSILSGTTPGIDPI 816

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            +  +++         V      EL  +  W                            +
Sbjct: 817 MRKFFLEEKKGAMLPRV----APELSPQTYW---------------------------YY 845

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A  I+  W I +A  RQ+ IDQAQS+NLY+ ++ + +++  +Y  AW  G+KT YY+R
Sbjct: 846 KPAHYINQHWSIRAAGMRQRHIDQAQSMNLYITNDYTLRQVLDLYIGAWRQGVKTVYYVR 905

Query: 905 SRS 907
           S+S
Sbjct: 906 SKS 908


>gi|194366072|ref|YP_002028682.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194348876|gb|ACF51999.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 787

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 256/802 (31%), Positives = 390/802 (48%), Gaps = 116/802 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           + F ++RL+  ++   +     DVS    + +        +S  DL   LI  + + ++ 
Sbjct: 38  LPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRVDL 97

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
             P + +  AR  L +L        YK+  +   +++   Y  Y    ++E +  R ++ 
Sbjct: 98  VAPEWEQFAARIYLRRL--------YKRASRNRFYDVGLKYGSYVG--LQESLADRGIYS 147

Query: 272 SMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323
           +  D    Y   +L+        ERD  F Y GL +L  RY        + E+PQ  ++ 
Sbjct: 148 N--DILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLT 205

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L
Sbjct: 206 IALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 265

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q
Sbjct: 266 QGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQ 325

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V + A W 
Sbjct: 326 LGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWY 385

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK------------VFRKISAVALWRK 548
           LF P EV      Y ++F      Y+ +   G  +              R + A+ L+++
Sbjct: 386 LFDPHEVKQAKGWYLQDF------YDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKR 439

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593
           ++    ETG+P++ ++D  N R+P +H G+++SSNLCTEI  N S               
Sbjct: 440 IMLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIV 499

Query: 594 ----SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
               + +  VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A 
Sbjct: 500 TTRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQAT 559

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +NH +RAIGLG  G+   L    I + S +A ++AD   E I+F  I AS +LA+E+G+
Sbjct: 560 ITNHKYRAIGLGTFGWHHLLAQQSIQWESQDAEQLADRLYERINFLTIQASAQLAKEKGS 619

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F GS W  G +  D        RD       S   WD L + V T G+RN   +A+A
Sbjct: 620 YPMFAGSDWHNGRYFSD--------RD------YSGAAWDSLAREVATHGLRNGWLLAVA 665

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + A I G + SIDP Y   Y +                              D +  
Sbjct: 666 PNMSTAQIAGSTASIDPIYSAFYYEEK---------------------------KDFRRP 698

Query: 828 DGSIG-NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK 883
             + G ++E  P         A+++D    +   +RRQ+ +DQ+ S NLY+  PS     
Sbjct: 699 VAAPGLSLETWP----YYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYV--PSTIRAS 752

Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905
            L  ++  AW  GLKTTYY+RS
Sbjct: 753 TLLELHLSAWREGLKTTYYVRS 774


>gi|331083186|ref|ZP_08332302.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404575|gb|EGG84115.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 733

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 248/755 (32%), Positives = 388/755 (51%), Gaps = 102/755 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + T + K+  ++ + ++Q
Sbjct: 32  ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            L         +EG+    + E+  + +++   + +K ER+  F Y GL +L +RY +  
Sbjct: 92  YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143

Query: 310 NGS-RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +   ++E PQ  +M +A+ LA+KE  +K K   +FY++LS      +TPTL N+   + Q
Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PD
Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323

Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           LF K   ++    W L  P E+       L D YG+E+E  Y    RQ    E    R I
Sbjct: 324 LFWKMAKEDLEQKWYLMCPHEIFMVKGWRLEDCYGEEWEEKY----RQCIEDERIKKRSI 379

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597
           +   + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N    E+   
Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439

Query: 598 --------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                VCNL S++L  H +     Y  +   + TAVR LDNVID
Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSL-GHLSVEDKKY--MKDIVGTAVRALDNVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++ ADE  E I++  + A
Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+E+G Y  F+GS W  G +         E R+ ++        W EL+ +V+  G
Sbjct: 557 SADLAEEKGTYQFFEGSDWHTGAY--------FEKRNYVSKE------WKELEYKVRNTG 602

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN   +A APT++ + + G +  +DP                V+  F + E K      
Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDP----------------VMKKFFMEEKK------ 640

Query: 818 EAMISDLKYHDGSIGNIERIPDDLK----KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      GS+  + R+  DL       +  A  ID  + +++   RQ+ IDQAQSL
Sbjct: 641 -----------GSM--LPRVAPDLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSL 687

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           NLY+ +  + ++L  +Y +AW  G+KT YY+RS+S
Sbjct: 688 NLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722


>gi|260589756|ref|ZP_05855669.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
 gi|260539996|gb|EEX20565.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
          Length = 733

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 248/755 (32%), Positives = 388/755 (51%), Gaps = 102/755 (13%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + T + K+  ++ + ++Q
Sbjct: 32  ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            L         +EG+    + E+  + +++   + +K ER+  F Y GL +L +RY +  
Sbjct: 92  YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143

Query: 310 NGS-RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +   ++E PQ  +M +A+ LA+KE  +K K   +FY++LS      +TPTL N+   + Q
Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PD
Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323

Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           LF K   ++    W L  P E+       L D YG+E+E  Y    RQ    E    R I
Sbjct: 324 LFWKMAKEDLEQKWHLMCPHEIFMVKGWRLEDCYGEEWEEKY----RQCIEDERIKKRSI 379

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597
           +   + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N    E+   
Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439

Query: 598 --------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                VCNL S++L  H +     Y  +   + TAVR LDNVID
Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSL-GHLSVEDKKY--MKDIVGTAVRALDNVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++ ADE  E I++  + A
Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+E+G Y  F+GS W  G +         E R+ ++        W EL+ +V+  G
Sbjct: 557 SADLAEEKGTYQFFEGSDWHTGAY--------FEKRNYVSKE------WKELEYKVRNTG 602

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN   +A APT++ + + G +  +DP                V+  F + E K      
Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDP----------------VMKKFFMEEKK------ 640

Query: 818 EAMISDLKYHDGSIGNIERIPDDLK----KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      GS+  + R+  DL       +  A  ID  + +++   RQ+ IDQAQSL
Sbjct: 641 -----------GSM--LPRVAPDLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSL 687

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           NLY+ +  + ++L  +Y +AW  G+KT YY+RS+S
Sbjct: 688 NLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722


>gi|15896522|ref|NP_349871.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum ATCC 824]
 gi|15026353|gb|AAK81211.1|AE007823_5 Ribonucleotide reductase alpha subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510680|gb|ADZ22316.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum EA 2018]
          Length = 743

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 241/792 (30%), Positives = 403/792 (50%), Gaps = 105/792 (13%)

Query: 162 LEMIVEEACSGLQD---VSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEK-EPNY 216
           +E + +EA  G+ D   + +K  L    K++  +G+ E ++  ++I     L +  EP +
Sbjct: 4   VENLCKEALKGINDDENIYTKTKLINVLKHITREGMKEEEIIKSVIQVCLELTKADEPKW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHE--MQCLYPEYFCRYIEEGVKARLLHESMM 274
            +  +R  +  L  EV     +K +  + +E   +  Y ++  +  +EG+  + + E+  
Sbjct: 64  LQGASRLYVINLYNEV-----RKNRNISENEDPYKGFY-DFIVKLTDEGLYGKYILENYS 117

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKE 332
             D+  L + +K +RDF F Y G+++L +RY +  N  R  +E+PQ  FM +AM LA+ E
Sbjct: 118 KEDIYELESFIKKDRDFLFTYSGIKLLSERYLIQ-NFERKVLELPQQMFMGIAMHLAVPE 176

Query: 333 TEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            ++ +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   
Sbjct: 177 KQENRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDTVDDSLKGIYKSLDNF 236

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A ++KY GG+G  +  VR +GA I G  G S GV+P++K+ NDTA+AV+Q G R G+V  
Sbjct: 237 ANVSKYGGGMGVYFGKVRSMGASIRGFKGASGGVVPWVKLFNDTAIAVDQLGVRNGSVAV 296

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVS 508
           +L+ WH D+ EF+ LR N GDDR++ HD+      PDLF +   +  +A W +  P E+ 
Sbjct: 297 WLDAWHKDLPEFMQLRTNNGDDRKKAHDVFPGVCYPDLFWRLAEEDIDANWYMMCPHEIK 356

Query: 509 -----DLHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
                 L D YG+E+E  Y +   + + D+      R +S   + R ++    ETG P+ 
Sbjct: 357 LVKGYSLEDYYGEEWEKRYFDCVNDPRIDK------RMMSVKDIVRLIIKSAAETGTPFA 410

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETA 598
            ++D  N  +P +H G+++SSNLCTEI  N S                       S +  
Sbjct: 411 FYRDAANRMNPNKHKGMIYSSNLCTEIMQNMSAMDILEDEIIDENGDKIIVQKAKSGDFV 470

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL SI +L +   N  D ++L   I T +R +DNVID+N +++  A+ +N  +R IGL
Sbjct: 471 VCNLSSI-VLGNVDVN--DDEELQYVIETQIRAMDNVIDLNYYSVPFAEVTNKRYRGIGL 527

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G  G+   L    + + S +  E  D   E I+++AI AS+ +A+++G Y  F+GS W+ 
Sbjct: 528 GTSGYHHMLTNNRVVWTSDDHFEFTDRVYEKINYYAIQASMNIAKDKGRYEYFEGSDWEN 587

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +                +   +   W  L  ++K  GMRN   MA+AP  + A I G 
Sbjct: 588 GSY--------------FKLRGYNSPKWKALIAKIKKYGMRNGYIMAVAPNGSTATIAGT 633

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S+ +DP     +++         +   +   L + + W                      
Sbjct: 634 SEGVDPVMARFWMEEKKGS----ITPKIAPNLSRENFW---------------------- 667

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                 + +A+ ID    ++    RQ+ IDQ+QS NLY+  + + +++  +Y +A+  G+
Sbjct: 668 -----FYNSAYNIDQKLCVKINGIRQRHIDQSQSFNLYITTDYTMRQIMNLYIEAYKSGV 722

Query: 898 KTTYYLRSRSAT 909
           K+ YY+RS+S T
Sbjct: 723 KSIYYVRSKSLT 734


>gi|308067266|ref|YP_003868871.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305856545|gb|ADM68333.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 777

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 258/808 (31%), Positives = 402/808 (49%), Gaps = 105/808 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
           ++F+  R+ +  +   SGL  +   +++   T K   D ++  D+  A   ++  L+ KE
Sbjct: 13  LAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDDISNAFAMAALELVSKE 72

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLL 269
            P++    AR LL        T++YKK   ATH   +    E +  +   I + V+  + 
Sbjct: 73  EPDWKFAAARALL--------TSLYKKA--ATHRRYKSYADEPYGAFYPLITDLVQRGIY 122

Query: 270 HESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
            + ++D+     +  L + +  + D  F+Y+GL  L +RY  +  +G  +E+PQ  +M +
Sbjct: 123 RQELLDYYTKEQIDELGDSILPKNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMII 182

Query: 325 AMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           AM L  +E   ++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L 
Sbjct: 183 AMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLE 242

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q 
Sbjct: 243 GIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQL 302

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+RV     W L
Sbjct: 303 GTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWNL 362

Query: 502 FSPDEVSD-------------LHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALW 546
           F P EV               L D Y + F      E YE +A +  I     + A+ + 
Sbjct: 363 FCPHEVKKVMGWKDDNGRPLGLEDFYDETFGSGTFREKYE-EASQHPILSRITVPAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           ++++    ETG P++ ++D  N  +P +  G+V+SSNLCTEI  N S+            
Sbjct: 422 KRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEELVTKD 481

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L         D       +   VR+LDNVIDIN   +
Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++ A+ +S+ELA+
Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y+ F+GS W  G +   S G     R+   +  +    W EL + VK  G+RN+  
Sbjct: 597 EKGRYAKFEGSDWSTGHY-FTSRGYTDGTREGKFVTTSE---WSELSEEVKQNGVRNAWL 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +   +  + + N     +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLNEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                                + TAF +D    I  AS RQ+ IDQ QS NLY+  P  K
Sbjct: 702 --------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYV-RPDIK 740

Query: 884 KLDF--IYRQAWLMGLKTTYYLRSRSAT 909
             +F  ++  AW  G+K+TYY+RSR+ T
Sbjct: 741 ATEFLELHIHAWKSGMKSTYYVRSRALT 768


>gi|302386032|ref|YP_003821854.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
 gi|302196660|gb|ADL04231.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
          Length = 752

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 248/752 (32%), Positives = 375/752 (49%), Gaps = 116/752 (15%)

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCL 251
           ALI ++  L  +E P++  + AR L+        E+L R  + + + K            
Sbjct: 61  ALIQAAVELTTQEAPDWEYIGARLLMVRFNIRLKEELGRRKIGSFFDK------------ 108

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HI 309
                C   EEG+    + E+    ++      +   R+  F Y GL++L +RY +  H 
Sbjct: 109 ----ICFLTEEGLYGDYILENYNKEEIQRFEGYMDQTRNHLFNYSGLELLLNRYVIRSHQ 164

Query: 310 NGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N   +E PQ  F+ +AM LA+ ET ++E     FY++LS+     +TPTL N+   + QL
Sbjct: 165 NAP-LETPQEMFLGIAMHLAMNETVDREAWVKRFYHMLSTLKVTMATPTLSNARKPYHQL 223

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++
Sbjct: 224 SSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVVRWI 283

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL L+ N GDDR + HD+      P+L
Sbjct: 284 KLANDTAVAVDQLGMRQGAVAVYLDVWHKDLPEFLTLKTNNGDDRMKAHDVFPGVCYPNL 343

Query: 489 FMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKI 540
           F K+  +N    W L  P E+       L D YG ++E      ER  D   + ++ ++I
Sbjct: 344 FWKQAKENIEGDWYLMCPHEILTVKGWALEDFYGIQWE------ERYLDCVSDSRIHKRI 397

Query: 541 SAVA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597
             +  + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+ E   
Sbjct: 398 IPIKDIIRLVLKSAVETGTPFTFNRDIVNEANPNSHCGMIYCSNLCTEIAQNMSTVEQLE 457

Query: 598 ---------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                 VCNL S++L      +  D  +LA   R+AVR LDNVI
Sbjct: 458 QQIRWVDGETVVVTVTKPGDFVVCNLASLSL---GKIDLTDTQELAELTRSAVRALDNVI 514

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N   I  AK +N  +R +GLG+ G+   L    I + S E +E +D   E I++ AI 
Sbjct: 515 DLNFFPIPYAKVTNLRYRPVGLGVSGYHHMLAKNGISWESQEHLEFSDRVFEAINYAAIQ 574

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS + A+E+G Y  F+GS W  G +  D  G  +E              W  L+++V   
Sbjct: 575 ASCDFAREKGRYDLFEGSQWQTGAY-FDKRGYCSE-------------KWKSLREKVAAY 620

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRN   +AIAPT++ + I G +  +DP     Y++   SG    V      +L     W
Sbjct: 621 GMRNGWLLAIAPTSSTSMIAGTTAGLDPVLNRYYLEEKKSGLVPRV----APDLSPETFW 676

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                   KY +                   A  ID  W + +A  RQ+ +DQAQS+NLY
Sbjct: 677 --------KYKN-------------------AHYIDQKWSVRAAGVRQRHVDQAQSMNLY 709

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + ++ + +++  +Y  AW  G+KT YY+RSRS
Sbjct: 710 ITNDYTLRQVLGLYILAWECGVKTIYYIRSRS 741


>gi|16804194|ref|NP_465679.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes EGD-e]
 gi|46908388|ref|YP_014777.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091824|ref|ZP_00229619.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|47095729|ref|ZP_00233335.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500180|ref|ZP_03668529.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes Finland 1988]
 gi|224501046|ref|ZP_03669353.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL R2-561]
 gi|226224762|ref|YP_002758869.1| ribonucleoside-diphosphate reductase, subunit alpha [Listeria
           monocytogenes Clip81459]
 gi|254825282|ref|ZP_05230283.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|254826955|ref|ZP_05231642.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|254831408|ref|ZP_05236063.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 10403S]
 gi|254853281|ref|ZP_05242629.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|254899144|ref|ZP_05259068.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J0161]
 gi|254912715|ref|ZP_05262727.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|254931733|ref|ZP_05265092.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|254937042|ref|ZP_05268739.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|255519997|ref|ZP_05387234.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-175]
 gi|284802602|ref|YP_003414467.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284995744|ref|YP_003417512.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|300764037|ref|ZP_07074033.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|16411625|emb|CAD00233.1| lmo2155 [Listeria monocytogenes EGD-e]
 gi|46881659|gb|AAT04954.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47015872|gb|EAL06799.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47019835|gb|EAL10573.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877224|emb|CAS05938.1| Putative ribonucleoside-diphosphate reductase, subunit alpha
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599336|gb|EEW12661.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|258606641|gb|EEW19249.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|258609645|gb|EEW22253.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|284058164|gb|ADB69105.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284061211|gb|ADB72150.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|293583288|gb|EFF95320.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|293590710|gb|EFF99044.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|293594528|gb|EFG02289.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|300515378|gb|EFK42429.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|328465962|gb|EGF37143.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 1816]
 gi|332312606|gb|EGJ25701.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 763

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 256/732 (34%), Positives = 364/732 (49%), Gaps = 103/732 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 82  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    DL+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
              E  KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 193 MQNEP-KEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371

Query: 506 EVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           EV       L D Y +      F   YE  E  AD    K  + + A+ + ++++    E
Sbjct: 372 EVKAKKGWYLQDFYDESKGEGTFREKYE--ELVADETISK--KIVKAIDIMKRIMMSQLE 427

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596
           TG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   + +
Sbjct: 428 TGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGD 487

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R+I
Sbjct: 488 FVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSI 544

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W
Sbjct: 545 GLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDW 604

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + G +               A    +   W EL K V   G+RN+  +A+AP  + A I 
Sbjct: 605 NTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIA 650

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G + SIDP Y   Y +                  +++D     +  DL        N+  
Sbjct: 651 GSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NLST 684

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P         A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW
Sbjct: 685 YP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAW 738

Query: 894 LMGLKTTYYLRS 905
             GLKTTYY+RS
Sbjct: 739 NEGLKTTYYVRS 750


>gi|172058303|ref|YP_001814763.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sibiricum 255-15]
 gi|171990824|gb|ACB61746.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sibiricum 255-15]
          Length = 755

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 242/686 (35%), Positives = 354/686 (51%), Gaps = 89/686 (12%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQA 319
           E G+    L E+    ++  LA  +   RD  F Y+GL+ L DRY    +  ++ E+PQ 
Sbjct: 116 EIGIFTPHLLETYTKEEVEELAASIDPSRDHLFTYIGLRTLSDRYLARDHVKKLYELPQE 175

Query: 320 FFMRVAMGLALKETEKEKRAVEF----YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            FM +AM   L +TE ++R +E     Y  LS+ +   +TPTL N+G  + QLSSCF+ T
Sbjct: 176 RFMIIAM--TLMQTEPKERRIELVKESYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDT 233

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TA
Sbjct: 234 VDDSLRGIYDSNTDVATLSKGGGGIGVYMGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTA 293

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G R+G++  YL+ WH D+ EFLD + N GD+R RTHD+ T   +PD FM+ V  
Sbjct: 294 VSVDQLGMRQGSIAVYLDIWHKDILEFLDAKLNNGDERLRTHDLFTGVSLPDHFMRTVEA 353

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYER--------QADRGEIKVFR-KISAVALW 546
              W LF P E+     + G   E +++  E+         A   E ++ R K+ A+ L 
Sbjct: 354 RGDWYLFDPHEI---RTVMGFSLEDSFDETEQGGSFTEKYTACVNEPRLSRTKVPAIDLV 410

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----SEET----- 597
           ++ +    ETG P++ F+D  N  +P +H G+++SSNLC+EI  N S    +EE      
Sbjct: 411 KRYMRSQLETGTPYMFFRDAVNRANPNKHAGMIYSSNLCSEIMQNMSPTTVTEEYTEDGK 470

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL SI L      N      L   I   +R+LDNVID+N   + +A+
Sbjct: 471 IIITKTPGDFVVCNLSSIALARAVREN-----VLERLIPIQMRMLDNVIDLNTIDVPQAQ 525

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G+   L L  I + S EAV+ AD   E I++  I AS++LA+E+GA
Sbjct: 526 ITNQKYRAVGLGTFGWHHLLALEGIRWESVEAVQYADRLYEKIAYLTIDASMQLAKEKGA 585

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W  G           E         T  L WD L+  +   GMRN+  MA+A
Sbjct: 586 YRLFEGSEWQTG-----------EYIARRHYKTTPELNWDRLQADITAHGMRNAYLMAVA 634

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P ++ A I G + SIDP Y+ +Y +   +    V     V +L     W           
Sbjct: 635 PNSSTAIIAGSTASIDPIYKKVYAEEKKNYKIPVT----VPDLTPETNW----------- 679

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                            + +AFEID +W I   + RQ+ IDQA S NLY+ +    K+L 
Sbjct: 680 ----------------FYKSAFEIDQLWSIRQNASRQRHIDQAISFNLYVKNSVKAKELL 723

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVE 912
            ++ +AW +G+KT YY RS   T+VE
Sbjct: 724 EMHMEAWQLGMKTIYYTRS---TTVE 746


>gi|307571741|emb|CAR84920.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes L99]
          Length = 757

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 76  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 127

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    DL+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 128 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 186

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            ++   KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 187 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 245

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 246 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 305

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 306 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 365

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553
           EV      Y ++F      Y+     G  +           + +KI  A+ + ++++   
Sbjct: 366 EVKAKKGWYLQDF------YDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 419

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594
            ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   +
Sbjct: 420 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 479

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +  VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R
Sbjct: 480 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 536

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS
Sbjct: 537 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 596

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A 
Sbjct: 597 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 642

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + SIDP Y   Y +                  +++D     +  DL        N+
Sbjct: 643 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 676

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
              P         A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  
Sbjct: 677 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 730

Query: 892 AWLMGLKTTYYLRS 905
           AW  GLKTTYY+RS
Sbjct: 731 AWNEGLKTTYYVRS 744


>gi|253574543|ref|ZP_04851884.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846248|gb|EES74255.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 777

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 262/809 (32%), Positives = 397/809 (49%), Gaps = 107/809 (13%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEK- 212
           ++F+S RL +  +    GL +V  + +L      +  D ++  ++  A   S+  L+ K 
Sbjct: 13  LAFDSARLGVYADRILQGLHNVDKERLLRGVNAKLRRDVVTGEEISNAFTMSALELVSKD 72

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE----YFCRYIEEGVKARL 268
           EP++    AR LL        T++YKK      ++    YPE     F   I E  +  +
Sbjct: 73  EPDWKYAAARSLL--------TSLYKKAAVNRRYKA---YPEEPYGSFYHLITELCQLGI 121

Query: 269 LHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323
             E +++      +  L   +    D  F+Y+GL  L +RY     +G  +E+PQ  +M 
Sbjct: 122 YREELLECYTKEQIEELGRTIDPSCDLLFDYIGLLTLTERYLATDFDGRTMELPQERYMV 181

Query: 324 VAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
           +AM L  KE E+++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMYLMHKEPEEKRLELVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W 
Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGEWH 361

Query: 501 LFSPDEVSD-------------LHDLYGKEFEIAYENYERQADRGEIKVFRKIS--AVAL 545
           LF P EV               L D Y +E        E+ A+        +I+  A+ +
Sbjct: 362 LFCPHEVKKTMGWKDENGRPLGLEDFYDEELGKG-SFREKYAEAVAHPTLSRITMPAIDI 420

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET--- 597
            ++++    ETG P++ ++D  N  +P +  G+++SSNLCTEI  N S      EE    
Sbjct: 421 MKRIMKSQLETGTPYMFYRDTVNRANPNRAHGMIYSSNLCTEIMQNQSPTVVEQEELVTK 480

Query: 598 ---------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                           VCNL SI+L             L   +    R+LDNVIDIN   
Sbjct: 481 DGQTRIVVSKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQTRMLDNVIDINNIE 535

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +A+ +N  +RAIGLG  G    L L  I + S EAVE  D   E I++  I +S+ELA
Sbjct: 536 VLQAQYTNSQYRAIGLGTFGLHHLLALEGIRWESQEAVEYNDALYEKINYLLIKSSMELA 595

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+G Y  F GS W+ G +  +S G +   R+   +       W EL+K V+  G+RN+ 
Sbjct: 596 KEKGKYPKFAGSDWETGQY-FESRGYVDGTREGKYVTTEQ---WRELQKEVRENGVRNAW 651

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             AIAP  + + I G + SIDP Y+ L  +   +  + + N     +L ++ +W      
Sbjct: 652 MFAIAPNGSTSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLSEKTIW------ 701

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
                                 + TAF ID  W IE A  RQ+ +DQ QS NLY+  P  
Sbjct: 702 ---------------------YYKTAFLIDQHWSIEMAGARQRHVDQGQSFNLYV-RPDI 739

Query: 883 KKLDF--IYRQAWLMGLKTTYYLRSRSAT 909
           +  DF  ++  AW  GLK+TYY+RSR+ T
Sbjct: 740 RATDFLDLHLHAWKAGLKSTYYVRSRALT 768


>gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis
           mellifera]
          Length = 610

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 283/468 (60%), Gaps = 23/468 (4%)

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDL+KNTG +  R  ++  A WIPDLFMKRV  N  WTL  P E   L D++G EF
Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           EI Y  YE      E +  R+I A  LW  +L    ETG P++ +KD CN +S  Q++G 
Sbjct: 162 EILYTRYE-----NEKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGT 216

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTE+   SS +E AVCNL SI  N+  +  N  FD+ KL    +     LD +I
Sbjct: 217 IKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKII 276

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + I +A+KSN  HR IG+G+ G   A  L+  P+ S EA ++  +  E + + A+ 
Sbjct: 277 DVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALE 336

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+E+G Y +++GS   +G+   D   ++           T+   W  LKK++   
Sbjct: 337 ASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP----------TNLWDWTILKKKIAKH 386

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +RDLW
Sbjct: 387 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 446

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           DE M +++  ++GSI +IERIPDDLK ++ T +EI    +++ A+ R  +IDQ+QSLN++
Sbjct: 447 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 506

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKG 918
           + +P+ +KL  ++   W MGLKT  YYLR++ A      +V+KS L+ 
Sbjct: 507 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSKLRN 554


>gi|295103294|emb|CBL00838.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium prausnitzii SL3/3]
          Length = 817

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 275/865 (31%), Positives = 424/865 (49%), Gaps = 146/865 (16%)

Query: 95  IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKLKIMMDD 151
           +E +QD+VE +LM+ GH+++ + Y+LYRE+RS +R  +   + +  D  +   L+ +  D
Sbjct: 36  VERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVLRRIQMD 95

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
            T   ++   L+M  E  C                     G++E +   AL  ++  L  
Sbjct: 96  FTEEVYSLAALQMKFESFCRL-------------------GMTEDERAEALTKAAVELTT 136

Query: 212 KE-PNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            E P +  + AR L    R           +  +Y K +  T    + LY +Y       
Sbjct: 137 AEAPKWEFIAARLLNHSFRCRNAQEWEGRGVCDLYGKLRYLTD---KGLYGDY------- 186

Query: 263 GVKARLLHESMMDFDLVYLAND-LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQA 319
            + A   HE       + +A D L  ERD  F Y GL +L  RY +  + SR+  E PQ 
Sbjct: 187 -ILAHYTHEE------IAMAEDFLCPERDELFTYSGLDLLLKRYVIQ-SRSRVPLETPQE 238

Query: 320 FFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+ TVPD
Sbjct: 239 MFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPD 298

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV
Sbjct: 299 SLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAV 358

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +N  
Sbjct: 359 DQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENID 418

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           A W L  P E+       L D +G E+E   + Y    +   I+  R ++   + R +L 
Sbjct: 419 APWHLMCPHEILTVKGYALEDYWGTEWE---KRYLDCVNDPRIEK-RSVTVKDIVRLVLR 474

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSE---------- 595
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N       S+E          
Sbjct: 475 SAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIV 534

Query: 596 -------ETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  E  VCNL S++L     N    D   +  T+ TA+R LDNVID+N + +E A+
Sbjct: 535 VTATRPGEFVVCNLASLSL----GNLPVEDEAYMERTVETAIRALDNVIDLNFYPLEYAR 590

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+E+G 
Sbjct: 591 LTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREKGR 650

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y+ F+GS W  G +  +  G  +E              W  L K V   GMRN+  +A+A
Sbjct: 651 YALFEGSDWQTGAY-FEKRGYTSE-------------KWRALAKTVAVQGMRNAYLLAVA 696

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + + G S  IDP                ++  F + E K                
Sbjct: 697 PTSSTSILSGTSAGIDP----------------IMKKFFLEEKK---------------- 724

Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
            GS+  + R+  +L       +  A  ID  W + +A  RQ+ IDQAQS+NLY+ ++ S 
Sbjct: 725 -GSM--LPRVAPELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 781

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS++
Sbjct: 782 RQVLRLYLEAWRAGVKTIYYVRSKA 806


>gi|16801323|ref|NP_471591.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           innocua Clip11262]
 gi|16414771|emb|CAC97487.1| lin2259 [Listeria innocua Clip11262]
          Length = 763

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 82  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    DL+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            ++   KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 193 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553
           EV      Y ++F      Y+     G  +           + +KI  A+ + ++++   
Sbjct: 372 EVKAKKGWYLQDF------YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594
            ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   +
Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +  VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R
Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS
Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 602

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A 
Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + SIDP Y   Y +                  +++D     +  DL        N+
Sbjct: 649 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 682

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
              P         A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  
Sbjct: 683 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736

Query: 892 AWLMGLKTTYYLRS 905
           AW  GLKTTYY+RS
Sbjct: 737 AWNEGLKTTYYVRS 750


>gi|217963684|ref|YP_002349362.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290893102|ref|ZP_06556090.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
 gi|217332954|gb|ACK38748.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290557264|gb|EFD90790.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
          Length = 763

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 251/734 (34%), Positives = 364/734 (49%), Gaps = 107/734 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 82  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    DL+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            ++   KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 193 -MQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553
           EV      Y ++F      Y+     G  +           + +KI  A+ + ++++   
Sbjct: 372 EVKAKKGWYLQDF------YDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594
            ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   +
Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +  VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R
Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS
Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGS 602

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A 
Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + SIDP Y   Y +                  +++D     +  DL        N+
Sbjct: 649 IAGSTASIDPIYSAFYYE------------------EKKDYRRPVIAPDL--------NL 682

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
              P         A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  
Sbjct: 683 STYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736

Query: 892 AWLMGLKTTYYLRS 905
           AW  GLKTTYY+RS
Sbjct: 737 AWNEGLKTTYYVRS 750


>gi|319655056|ref|ZP_08009125.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317393251|gb|EFV74020.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 740

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 245/732 (33%), Positives = 365/732 (49%), Gaps = 94/732 (12%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP++    +R LL+KL  E       +P     H         F   IE      +  + 
Sbjct: 57  EPDWTFAASRLLLKKLYTESGKNRECQPDDCYKH---------FYTLIERLTALGIYDQD 107

Query: 273 MMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327
           ++D     ++  LA  +K E D  F YLGL++L DRY        + E+PQ  FM ++M 
Sbjct: 108 LLDVYSKDEINELAQFIKKENDRLFTYLGLKMLADRYLARDKQKNLYELPQERFMIISMV 167

Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           L  +E + ++  +  E Y  +S  +   +TPTL N+G    QLSSCF+ TV D L  I+ 
Sbjct: 168 LMKREPKGKRLELIKEAYWAMSGLYMTVATPTLANAGKNWGQLSSCFIETVDDSLDSIYD 227

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G+R+
Sbjct: 228 SNTDIASLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVIPWMKQLNNTAVSVDQLGQRQ 287

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   IPDLFM++V     W LF P 
Sbjct: 288 GAISVYLDVWHKDIFSFLDAKLNNGDERQRTHDLFTGVCIPDLFMEKVESRGYWYLFDPH 347

Query: 506 EVS-----DLHDLYGK-EFEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           EV       L D Y + E E ++ + Y+   D   +    K+ A+ + + ++    ETG 
Sbjct: 348 EVRKVMGFSLEDFYDEGEGEGSFRQKYKECIDNPNLSR-EKVPAIDIMKSIMRSQLETGT 406

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------------AV 599
           P++ ++D  N ++   H G+++ +NLCTEI  N S  +                     V
Sbjct: 407 PFMFYRDEVNRKNANSHCGMIYCTNLCTEIVQNQSVTKRVEEYTRDGRIIIEKHPGDFVV 466

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL SINL    +        L   +   VR+LDNVIDIN   + + + +N  +RAIGLG
Sbjct: 467 CNLSSINLARAISEGV-----LERLVPIQVRMLDNVIDINSIPVPQGQITNQKYRAIGLG 521

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+   L L  I + S EA + AD   E I+F AI +S++LA+E+G+YS+FKGS W+ G
Sbjct: 522 TFGWHHLLALKKITWESEEAEKFADILYEQIAFLAIKSSMDLAKEKGSYSAFKGSDWETG 581

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +      L AE          S + W  L K V   G+RN+  +A+AP A+ A I G +
Sbjct: 582 AYFEKRGYLEAE----------SDMDWAALSKEVSENGVRNAYLLAVAPNASTALIAGST 631

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SIDP +   Y  S    D+ +       ++    +W                       
Sbjct: 632 PSIDPIFNKQY--SEEKKDYRI--PVTAPDINSETIW----------------------- 664

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF--IYRQAWLMG 896
                + +A+ I+  W I   + RQK IDQA S N Y+  P+  K +D   ++  AW   
Sbjct: 665 ----YYKSAYHINQEWSIRQNANRQKHIDQAISFNFYI--PNHIKAIDLLNLHLSAWKKK 718

Query: 897 LKTTYYLRSRSA 908
           LKTTYY+RS S+
Sbjct: 719 LKTTYYIRSTSS 730


>gi|167461831|ref|ZP_02326920.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383592|ref|ZP_08057350.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152060|gb|EFX44996.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 761

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 242/682 (35%), Positives = 346/682 (50%), Gaps = 90/682 (13%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQA 319
           E+G+    L +S    ++  L   ++ E+D  F Y+GL  L +RY      G   E+PQ 
Sbjct: 125 EKGIYKAELIDSYSREEIEDLGRAIQPEKDKLFPYVGLITLAERYLATGFAGEFYELPQE 184

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376
            FM +AM L ++E  + + K   E Y  LS+ +   +TPTL N+G  R  QLSSCF+ TV
Sbjct: 185 RFMIIAMQLMIQEKRSTRLKWVKEAYWALSNQYMTVATPTLSNAGKARAGQLSSCFIDTV 244

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L GI+ +  + A L+K  GG+G     VR  G+ I G  GKS GV+P+++  N+TAV
Sbjct: 245 DDSLQGIYDSNTDIARLSKMGGGIGVYMGKVRSRGSDIRGYKGKSSGVLPWIRQLNNTAV 304

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           +V+Q G RKG++  YL+ WH D+  FLDL+ N GD+R R HD+     IPDLFM+ V Q 
Sbjct: 305 SVDQLGTRKGSIAVYLDVWHKDILSFLDLKLNNGDERLRAHDIFPGVCIPDLFMEAVEQR 364

Query: 497 AGWTLFSPDEVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALW 546
             + LF P EV       L DLY ++     F   YE            V     A+ + 
Sbjct: 365 GEFHLFDPHEVRQVMGYSLEDLYDEKVGEGSFRTKYEECVNNPQLSRTTV----QAIDIM 420

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           +++L    ETG P++ ++D  N  +P +H G+++SSNLCTEI  N S+            
Sbjct: 421 KRILISQLETGTPYMFYRDTVNRANPNKHKGMIYSSNLCTEIMQNMSATTLIEEELNDGE 480

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   +  VCNL SI+L     +       L   I   +R+LDNVIDIN   + +A 
Sbjct: 481 IVIRKQAGDFVVCNLSSIHLARAVPDG-----VLERLIPVQIRMLDNVIDINRIEVPQAT 535

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RAIGLG  G    L L  I + S EAV   +   E ISF AI AS+ELA+E+GA
Sbjct: 536 YTNKRYRAIGLGTFGLHHLLALKKIQWESEEAVVYNEALYERISFLAIQASMELAREKGA 595

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W+ G +  +  G  +E              W +L+++ K  GMRN   MA+A
Sbjct: 596 YPLFEGSGWETGEY-FELKGYKSE-------------EWKKLQQQTKENGMRNGYLMAVA 641

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + I G + SIDP Y  +  +   +  + + N     +L  + +W           
Sbjct: 642 PNGSTSIIAGSTASIDPIYDLISYEEKTT--YKIANP--APDLSPQTIW----------- 686

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            + TAF ID  W I  AS RQ+ IDQ QS NLY+ +P  K   F
Sbjct: 687 ----------------YYKTAFHIDQHWSIRQASARQRHIDQGQSFNLYV-KPDIKAKQF 729

Query: 888 --IYRQAWLMGLKTTYYLRSRS 907
             ++  AW  GLK +YY+RSR+
Sbjct: 730 LELHLDAWRSGLKASYYVRSRA 751


>gi|116873588|ref|YP_850369.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742466|emb|CAK21590.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 764

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 251/714 (35%), Positives = 361/714 (50%), Gaps = 90/714 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286
           R  L  +YKK  K   +     Y  Y        E G+ +  + ++    DL+     + 
Sbjct: 90  RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEDLIVAGKLID 149

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341
            E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L ++   KEKR     E
Sbjct: 150 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMKLVEE 207

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G
Sbjct: 208 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 267

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E 
Sbjct: 268 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 327

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGK 516
           FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV       L D Y +
Sbjct: 328 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDE 387

Query: 517 EFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
              I    E YE       I   + + A+ + ++++    ETG+P++ ++D  N  +P +
Sbjct: 388 SKGIGTFREKYEELVADETISK-KIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNK 446

Query: 575 HVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINL-LAHFANN 614
           H G+V+SSNLCTEI  N S                   + +  VCNL S+NL  A  A  
Sbjct: 447 HEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVLAEE 506

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           +   ++L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L +I +
Sbjct: 507 EGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAW 563

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W+ G +             
Sbjct: 564 DSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEY------------- 610

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
             A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +  
Sbjct: 611 -FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE-- 667

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                           +++D     +  DL        N+   P         A+++D  
Sbjct: 668 ----------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQF 699

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
             +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 700 ASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 751


>gi|332971064|gb|EGK10034.1| ribonucleotide-diphosphate reductase alpha subunit [Desmospora sp.
           8437]
          Length = 749

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 251/727 (34%), Positives = 364/727 (50%), Gaps = 93/727 (12%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYK--KPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +EP++  V +R  L +L  E     ++  KP    +  ++ L         E GV + LL
Sbjct: 70  EEPDWTFVASRIYLLRLYEEASRHPFRQGKPYGDFYELIRGL--------TESGVYSPLL 121

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328
            E+    ++  LA  ++ ERD  F Y GL+ L DRY      G   E+PQ  F+ +AM L
Sbjct: 122 LETYTRAEIGELAMMIRPERDHLFTYAGLRTLADRYLARSREGELYELPQERFLVIAMVL 181

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
             +E E+E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+  V D L GI+ 
Sbjct: 182 MSRE-ERERRLHWVREAYWALSNLYMTVATPTLSNAGKDFGQLSSCFVDVVDDSLQGIYD 240

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K  GGLG     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 241 SNTDVARVSKGGGGLGVYLGKIRSRGSDIKGYKGISSGVIPWMKQLNNTAVSVDQLGQRK 300

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G++  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM+ V     W LF P 
Sbjct: 301 GSIAVYLDIWHQDILSFLDAKLNNGDERLRTHDLFTGVCIPDLFMEAVEAREDWHLFDPH 360

Query: 506 EVS-----DLHDLYG-KEFEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           ++       L D Y  K  E ++ E Y    +  E+     + A+ L ++++    ETG 
Sbjct: 361 QIRRVMGWSLEDFYDEKRGEGSFREKYAACVEHPELDR-TTVPAIELMKRIMVSQLETGT 419

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAV 599
           P++ ++D  N ++P  H G+++ SNLCTEI  N S                     +  V
Sbjct: 420 PYMFYRDEANRKNPNHHAGLIYCSNLCTEIMQNMSPTLLREERVEEGKILITKEPGDFVV 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL SINL     +       L   I   VR+LDNVID+N   + +A+ +N  +RAIGLG
Sbjct: 480 CNLSSINLGRAVPDG-----VLKRLIPVQVRMLDNVIDLNTIEVPQARITNQKYRAIGLG 534

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+   L +  I + S EAV   +E    I++  I AS+ELA+E+G Y  F GS W  G
Sbjct: 535 TFGWHHLLAVKGIRWESEEAVRFGEELYGEIAYLTIRASMELAREKGPYPLFAGSDWQTG 594

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +  +  GL  E             PW  L + V+  G+RN+  MA+AP A+ + I G +
Sbjct: 595 AY-FEKRGLREE-------------PWHSLAEDVRHHGLRNAWLMAVAPNASTSLIAGST 640

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SIDP ++  Y +   +    V    L  E      W                       
Sbjct: 641 ASIDPVFRREYSEEKKNYKIPVTAPDLTPETG----W----------------------- 673

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                +  A EID  W +  A+ RQ++IDQ+QSLNLY+  +   + L  ++  AW  GLK
Sbjct: 674 ----YYKPAHEIDQRWSLRQAAARQRYIDQSQSLNLYVRHDIKARDLLDLHLTAWKSGLK 729

Query: 899 TTYYLRS 905
           TTYYLRS
Sbjct: 730 TTYYLRS 736


>gi|313632344|gb|EFR99386.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL N1-067]
          Length = 759

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 246/718 (34%), Positives = 361/718 (50%), Gaps = 99/718 (13%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286
           R  L  +YKK  K   +     Y  Y        E G+ +  + ++    +L+     + 
Sbjct: 86  RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEELIEAGKLID 145

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341
            E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L ++   KEKR     E
Sbjct: 146 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMNLVGE 203

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G
Sbjct: 204 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 263

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E 
Sbjct: 264 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 323

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV      Y ++F   
Sbjct: 324 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF--- 380

Query: 522 YENYERQADRGEIK-----------VFRKI-SAVALWRKMLTMLFETGHPWITFKDPCNI 569
              Y+     G  +           + +KI  A+ + ++++    ETG+P++ ++D  N 
Sbjct: 381 ---YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQLETGNPFMFYRDEVNR 437

Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAH 610
            +P +H G+V+SSNLCTEI  N S                   + +  VCNL S+NL   
Sbjct: 438 MNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRA 497

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               +   ++L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L 
Sbjct: 498 VVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALK 554

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKGS W+ G +         
Sbjct: 555 NIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGSDWNTGEY--------- 605

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                 A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y
Sbjct: 606 -----FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFY 660

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +                  +++D     +  DL        N+   P         A++
Sbjct: 661 YE------------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYK 690

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           +D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 691 VDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 746


>gi|289435503|ref|YP_003465375.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171747|emb|CBH28293.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 763

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 246/718 (34%), Positives = 361/718 (50%), Gaps = 99/718 (13%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLK 286
           R  L  +YKK  K   +     Y  Y        E G+ +  + ++    +L+     + 
Sbjct: 90  RLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEELIEAGKLID 149

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVE 341
            E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L ++   KEKR     E
Sbjct: 150 PEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMNLVGE 207

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G
Sbjct: 208 AYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVG 267

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E 
Sbjct: 268 AYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIES 327

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV      Y ++F   
Sbjct: 328 FLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF--- 384

Query: 522 YENYERQADRGEIK-----------VFRKI-SAVALWRKMLTMLFETGHPWITFKDPCNI 569
              Y+     G  +           + +KI  A+ + ++++    ETG+P++ ++D  N 
Sbjct: 385 ---YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQLETGNPFMFYRDEVNR 441

Query: 570 RSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAH 610
            +P +H G+V+SSNLCTEI  N S                   + +  VCNL S+NL   
Sbjct: 442 MNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRA 501

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               +   ++L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L 
Sbjct: 502 VVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALK 558

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKGS W+ G +         
Sbjct: 559 NIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGSDWNTGEY--------- 609

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                 A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y
Sbjct: 610 -----FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFY 664

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +                  +++D     +  DL        N+   P         A++
Sbjct: 665 YE------------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYK 694

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           +D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 695 VDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 750


>gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 926

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 255/841 (30%), Positives = 409/841 (48%), Gaps = 132/841 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSET-YKNMYDGLSESDLETAL 202
           L +   DG L   +S +L   + +   GL     + + L+E+  + MY  ++  +++   
Sbjct: 67  LHVSKRDGRLELLDSTKLLQRLTDLSDGLDMRFLNLVALTESIVRGMYPNVTTHEIDVLA 126

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR-------EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++ +L  + P+Y ++ AR L+ +  +       E + T+Y   +    H++  L    
Sbjct: 127 AETAASLGTQHPDYGRLAARILITQNHKTTPTCFSEAIETLYNSGKGFIDHKVGEL---- 182

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRI 314
             R     + +R++HE                 RD    Y G + L   Y L   NG+++
Sbjct: 183 -VRRRGPEIDSRIVHE-----------------RDLEMTYFGYKTLERAYLLKKDNGNQV 224

Query: 315 -EMPQAFFMRVAMGL-------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
            E PQ   MRVA+G+       +  E +  + A E Y+L+S   F  ++PTLF++GT HP
Sbjct: 225 LERPQYLMMRVALGIHCTSKMSSRSEDDCLEAAFETYDLMSRGFFTHASPTLFHAGTTHP 284

Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           QLSSCFL  + +D + GI+  L+  A+++K +GG+G     +R  G  I GT G S G++
Sbjct: 285 QLSSCFLVQMSEDSINGIYDTLKRCAVISKAAGGIGLSVHNIRARGTPIQGTRGVSNGLV 344

Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           P L+V + T+  V+QGG KR GA   YLE WH D+ + L L+KN G + +R  D+    W
Sbjct: 345 PMLRVFDVTSRYVDQGGGKRPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLW 404

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV ++  W+L  P +   L   YG +FE  Y++YE++      K  R++ A  
Sbjct: 405 IPDLFMKRVEEDDVWSLMCPHQCPGLAHCYGAKFEALYQHYEQEG-----KFVRQVRARE 459

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +L    ETG P++ +KD CN +S QQ++G +  SNLCTEI   S  EETAVCNL S
Sbjct: 460 LWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLAS 519

Query: 605 INLLAHFANNQ--------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           I L     + +              FD++ L    +   R L+++ID+N + ++ AK SN
Sbjct: 520 ICLPRFVVSERGTFGSISPESGSAFFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSN 579

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A   L +P+ S  A ++ +   E I   A+ AS ELA++ G Y +
Sbjct: 580 FKHRPIGIGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYET 639

Query: 711 FKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLP--------------WDELKKRVK 754
           F GS   QG    +  GL  +     + A+ + + +P              W+ L++R+ 
Sbjct: 640 FAGSPASQGKLQFNLWGLSDDETPSHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIV 699

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS                                 +S   T V+S      + + 
Sbjct: 700 KTGLRNS---------------------------------LSWASTSVSSLSAQTFRNQM 726

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           + D           GS+ NI  IPD LK+++ T +EI    +I+  + R K+IDQ     
Sbjct: 727 MRD----------GGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADRGKFIDQ----- 771

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK--LNAVPVTDP 931
                P+  KL  ++  AW  GLKT  YYLR++ A +  + T++ +     +  +P  +P
Sbjct: 772 ----NPNMDKLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEKISPTVIVGGIPEAEP 827

Query: 932 N 932
           +
Sbjct: 828 D 828


>gi|310639979|ref|YP_003944737.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309244929|gb|ADO54496.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 812

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 251/801 (31%), Positives = 397/801 (49%), Gaps = 91/801 (11%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSS-KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
           ++F+  R+ +  +   SGL  +   +++   T K   D ++  ++  A   ++  L+ KE
Sbjct: 48  LAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDEISNAFAMAALELVSKE 107

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P++    AR LL  L ++  T  +++ +          YP      +++G+  + L + 
Sbjct: 108 EPDWKFAAARALLTSLYKKAAT--HRRYKSYADEPYGAFYP-LITDLVQKGIYRQELLDC 164

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
                +  L + +  + D  F+Y+GL  L +RY  +  +G  +E+PQ  +M +AM L  +
Sbjct: 165 YTKEQIDELGDSILPQNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMIIAMYLMHQ 224

Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
           E   ++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L GIF +  
Sbjct: 225 EPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 284

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q G RKGA+
Sbjct: 285 DVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 344

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+RV     W LF P EV 
Sbjct: 345 AVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWNLFCPHEVK 404

Query: 509 D-------------LHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTML 553
                         L D Y + F      E YE +A +  I     + A+ + ++++   
Sbjct: 405 KVMGWKDDKGRPLGLEDFYDEAFGSGSFREKYE-EASKHPILSRITVPAIDIMKRLMKSQ 463

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595
            ETG P++ ++D  N  +P +  G+V+SSNLCTEI  N S+                   
Sbjct: 464 LETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEELVTKDGQTRIVI 523

Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                +  VCNL SI+L         D       +   VR+LDNVIDIN   + +A+ +N
Sbjct: 524 SKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDINNIEVLQAQYTN 578

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +RA+GLG  G    L L  I + S EAV   D   E I++ A+ +S+ELA+E+G Y+ 
Sbjct: 579 SQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSMELAKEKGRYAK 638

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS W  G +   S G     R+   +  +    W EL + V+  G+RN+   AIAP  
Sbjct: 639 FEGSDWATGHY-FTSRGYTDGTREGKFVTTSE---WSELAEEVQQNGVRNAWLFAIAPNG 694

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I G + SIDP Y+ L  +   +  + + N     +L ++ +W              
Sbjct: 695 STSIIAGSTASIDPLYELLSYEEKTT--YKIANP--APDLNEKTIW-------------- 736

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--I 888
                         + TAF +D    I  AS RQ+ IDQ QS NLY+  P  K  +F  +
Sbjct: 737 -------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYV-RPDIKATEFLEL 782

Query: 889 YRQAWLMGLKTTYYLRSRSAT 909
           +  AW  G+K+TYY+RSR+ T
Sbjct: 783 HIHAWKSGMKSTYYVRSRALT 803


>gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori v225d]
          Length = 788

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 193/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQSLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NLETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|255028523|ref|ZP_05300474.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes LO28]
          Length = 620

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 239/655 (36%), Positives = 340/655 (51%), Gaps = 92/655 (14%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEF 342
           E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L ++   KEKR     E 
Sbjct: 8   EKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL-MQNEPKEKRMKLVEEA 65

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G 
Sbjct: 66  YWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGA 125

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
               VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E F
Sbjct: 126 YLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESF 185

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE 517
           LDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV       L D Y + 
Sbjct: 186 LDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDES 245

Query: 518 -----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                F   YE  E  AD    K  + + A+ + ++++    ETG+P++ ++D  N  +P
Sbjct: 246 KGEGTFREKYE--ELVADETISK--KIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNP 301

Query: 573 QQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAHFAN 613
            +H G+V+SSNLCTEI  N S                   + +  VCNL S+NL      
Sbjct: 302 NKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVA 361

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +   ++L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L +I 
Sbjct: 362 EEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIA 418

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W+ G +            
Sbjct: 419 WDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEY------------ 466

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
              A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y + 
Sbjct: 467 --FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE- 523

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                            +++D     +  DL        N+   P         A+++D 
Sbjct: 524 -----------------EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQ 554

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
              +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 555 FASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 607


>gi|330837705|ref|YP_004412346.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
 gi|329749608|gb|AEC02964.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
          Length = 848

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 275/916 (30%), Positives = 432/916 (47%), Gaps = 124/916 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR G   ++   KI+ A+  AF       ASRS    D I+  LT +    L + + S
Sbjct: 7   IIKRTGKPETYQEHKITAAMKAAF-------ASRSHTADDTILSRLTGEVHDELTRLHAS 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +V +E IQD VE  LM+  +  + + Y+LYR  R+  R  +    +  P+ P+L    
Sbjct: 60  GTMVDVELIQDTVEKILMKHEYFDVAKSYILYRSVRTKKRDDRKKILNLLPV-PEL---- 114

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALIFSSR 207
            +  LIS                 +D +      +     +   S+  +ET  +L    R
Sbjct: 115 -EPVLISIQ---------------RDYADAPYQLDLLYGKFSAFSKPGMETDESLGMLVR 158

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKA 266
             +E     A     F+  +LR    +   KK +  + +    L+ +   R++  EG+  
Sbjct: 159 AAVEMTTQDAP-DWEFIAARLRYLQFSLTLKKQE--SRYGFSDLFGK--IRFLTTEGLYG 213

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + E     ++   A  +  +R+    Y  L +L  RY +  + G  +E PQ  F+ +A
Sbjct: 214 AYILEKYTHEEIDRAAAFIDEKRNDFLTYSALDLLLQRYVIRSHEGELLETPQELFLGIA 273

Query: 326 MGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LA+ E +     V  FY+++S+     +TPTL N+   + QLSSCF+ TVPD L GI+
Sbjct: 274 LHLAMDEKKDRLDWVRRFYDMISTLKVTMATPTLSNARKPYHQLSSCFIDTVPDTLDGIY 333

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   + ++K+ GG+G  +  VR +G+ I    G + GVI ++K+ANDTAVAV+Q G R
Sbjct: 334 RSVTNFSQVSKFGGGMGLYFGKVRAVGSAIRDFKGVAGGVIRWIKLANDTAVAVDQLGMR 393

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+      PDLF + V  +    W L 
Sbjct: 394 QGAVAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPGVCYPDLFWRMVENDIEGTWNLM 453

Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P E+       L D YG E+E  Y  +E   D    K  R I    L R ++    ETG
Sbjct: 454 CPYEIYKVKGYHLEDSYGDEWEKRY--HECLNDPAVPK--RPIKIKELVRMIIKSGVETG 509

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------------S 592
            P+  F+D  N  +P  H G+++ SNLCTEI  N                         +
Sbjct: 510 TPFAFFRDAVNKANPNAHKGMIYCSNLCTEIAQNMAPITQESVEVTTEGAGGDIVVVEKT 569

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S+ +L +   N  D  ++   +   VR LDNVID+N + +  A+ +N  
Sbjct: 570 KPGEFVVCNLASL-VLGNI--NVDDPVEVEGIVTATVRALDNVIDLNMYPVPYAEITNKR 626

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L    + + S   + IAD   E I++ A+ AS ++A E+G+Y+ F+
Sbjct: 627 YRAIGLGTSGYHHMLAKKGVAWESEAHLGIADRVFEAINYWAVKASSDIAAEKGSYAYFE 686

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +  D      +              W  L+  V   GMRN+  +AIAPT++ 
Sbjct: 687 GSDWQTGAY-FDKRNYTGD-------------RWAALRSTVAKQGMRNAYLIAIAPTSST 732

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G +  +DP  +  +++         V      EL  +  W                
Sbjct: 733 SILAGTTAGLDPVLRRFFLEEKKKNILPRV----APELSPKTYW---------------- 772

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A  ID +W + +A  RQ+ +DQAQSLNLY+  + S +++  +Y +
Sbjct: 773 -----------LYKNAHLIDQIWTVRAAGVRQRHVDQAQSLNLYITTDMSFRQIMNLYVE 821

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YYLRS++
Sbjct: 822 AWKNGVKTIYYLRSKA 837


>gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
 gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
          Length = 788

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 193/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NLETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|254517516|ref|ZP_05129572.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
 gi|226911265|gb|EEH96466.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
          Length = 743

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 257/765 (33%), Positives = 395/765 (51%), Gaps = 111/765 (14%)

Query: 188 NMYDG-LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           NM D  + +S ++ AL  +S    + EP +    AR  + KL  ++     +K ++  + 
Sbjct: 38  NMKDEEIRDSIIQVALELTS----DMEPRWQNAAARLYVFKLYDKI-----RKNREINND 88

Query: 247 EMQCLYPE---YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           E   +Y +   +  +  E+G+  + + E+    +++ L N++K ERDF F Y G+ +L  
Sbjct: 89  EN--IYGDLYGFINKLTEKGLYGKYILENYTREEILELENEIKPERDFLFTYSGINLLAK 146

Query: 304 RYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359
           RY +   + S +E+PQ  FM +AM LA+ E +KE R   A  FY++LSS     +TPT+ 
Sbjct: 147 RYLIQDFDRSILELPQQMFMGIAMHLAIPE-KKEVRVLWAKRFYDVLSSLKATMATPTMS 205

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR L + I G  G
Sbjct: 206 NARKPFYQLSSCFIDTVQDSLKGIYKSLDNFAEVSKFGGGMGIYIGKVRALESPIRGFKG 265

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL L+ N GDDR++ HD+
Sbjct: 266 ASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDLPEFLQLKTNNGDDRKKAHDV 325

Query: 480 NTANWIPDLFMKRVTQ--NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRG 532
                 PDLF K      +A W +  P E+       L D YG+E+E  Y  YE   D  
Sbjct: 326 FPGLCYPDLFWKLAETDIDANWYMMCPHEIRLAKGYSLEDFYGEEWEKKY--YECVEDDS 383

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             K  R +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLCTEI  N 
Sbjct: 384 ISK--RVMSVKEIVRLIIKSAAETGTPFAFYRDTVNKMNPNKHKGMIYSSNLCTEIMQNM 441

Query: 593 SS------------------EET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SS                  E+T      VCNL S+ L      N    ++L   + T +
Sbjct: 442 SSMDIQQSEVKDENGDTIIIEKTKSGDFVVCNLSSVVLGNIDVKND---EELGYVVETQI 498

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +      E AD+  E 
Sbjct: 499 RAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNLIHWTEDSHKEFADDVYER 558

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++HAI AS+ +++E+G YS F+GS W  G +             EL   ++ +  W++L
Sbjct: 559 INYHAIKASMNISKEKGRYSCFEGSDWHNGNYF------------ELRGYKSEK--WNQL 604

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ V T GMRN   MA+AP  + A I G S+ IDP                V+  F + E
Sbjct: 605 REEVNTHGMRNGYLMAVAPNGSTATIAGTSEGIDP----------------VMARFWLEE 648

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQK 865
            K                 GSI  I +   +L +     + +A+ ID  W ++    RQ+
Sbjct: 649 KK-----------------GSI--IPKTAPNLSEENYWYYNSAYNIDQKWCVQINGIRQR 689

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            IDQ QS NLY+    + +++  +Y +A   G+K+ YY+RS+S T
Sbjct: 690 HIDQGQSFNLYITTNYTMRQIMNLYIEACKAGVKSIYYVRSKSLT 734


>gi|237738721|ref|ZP_04569202.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
 gi|229423824|gb|EEO38871.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
          Length = 755

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 239/801 (29%), Positives = 389/801 (48%), Gaps = 112/801 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ T+   +E ++A V  R L+ +  REV            +H  +  Y + F + I+  
Sbjct: 65  TAVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHM 111

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           V+  L  E ++ +   +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ  
Sbjct: 112 VELGLYDERLLTYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTLF P E+      +L +LYG EFE  YE  E+  D   IK+ R +SA  L++ ++  
Sbjct: 352 SWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598
             ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE          
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSE 468

Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLMY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + +
Sbjct: 581 SKWDQAIF-------FGKKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G                                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657

Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
              IP  +K +   A+       ++P+  ++  ++   W  Q  S+ +  D     K   
Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IY---RQAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736


>gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Gambia94/24]
          Length = 788

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAEEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|315304278|ref|ZP_07874627.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627357|gb|EFR96141.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
          Length = 763

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 248/734 (33%), Positives = 362/734 (49%), Gaps = 107/734 (14%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 82  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    +L+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 134 KNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            ++   KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L  I+ 
Sbjct: 193 -MQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQSIYD 251

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIK-----------VFRKI-SAVALWRKMLTML 553
           EV      Y ++F      Y+     G  +           + +KI  A+ + ++++   
Sbjct: 372 EVKAKKGWYLQDF------YDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMSQ 425

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594
            ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   +
Sbjct: 426 LETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQA 485

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +  VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R
Sbjct: 486 GDFVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKGS
Sbjct: 543 SIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKGS 602

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A 
Sbjct: 603 DWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQ 648

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + SIDP Y   Y +        V+   L              +S   Y++      
Sbjct: 649 IAGSTASIDPIYSAFYYEEKKDYRRPVIAPGL-------------NLSTYPYYEKG---- 691

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
                        A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  
Sbjct: 692 -------------AYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMT 736

Query: 892 AWLMGLKTTYYLRS 905
           AW  GLKTTYY+RS
Sbjct: 737 AWNEGLKTTYYVRS 750


>gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter
           pylori 908]
 gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter
           pylori 2018]
 gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter
           pylori 2017]
          Length = 788

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + ++ ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/323 (39%), Positives = 179/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L  L I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Lithuania75]
          Length = 788

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/451 (42%), Positives = 275/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori P12]
 gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori P12]
          Length = 788

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/323 (39%), Positives = 179/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+FPID     A    E  +   +   W  L+++VK+ GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKSNGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L       + W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++ID   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  +KS L
Sbjct: 756 KLGLKSTYYLRSESPSIDKKSVL 778


>gi|237742882|ref|ZP_04573363.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
 gi|229430530|gb|EEO40742.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
          Length = 755

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 238/806 (29%), Positives = 390/806 (48%), Gaps = 112/806 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199
           +  + K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59

Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            +LI ++ ++   +E ++A V  R L+ +  REV            +H     Y + F +
Sbjct: 60  ASLINTAVSMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSK 106

Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
            I + V+  L  E ++ +   +L  +   +   RD  ++Y G  +  +RY +  +G   E
Sbjct: 107 TIRKMVELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYE 166

Query: 316 MPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           +PQ  FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF
Sbjct: 167 LPQETFMAISMMLALNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCF 226

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +T + D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ N
Sbjct: 227 ITAIDDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVN 286

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKR
Sbjct: 287 DTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKR 346

Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           V  N  WTL  P E+      +L +LYG EFE  YE  E  ++   IK+ + +SA  L++
Sbjct: 347 VKNNEAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSN---IKLKKVLSAKELFK 403

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA--- 598
            ++    ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE     
Sbjct: 404 SIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTS 463

Query: 599 ----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                      CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K
Sbjct: 464 IRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNK 517

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N  +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY
Sbjct: 518 HNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEMFERIALYSIKASALLAKDRGAY 575

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +FKGS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP
Sbjct: 576 KAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAP 628

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + G + S+ P++   +++ N  G                               
Sbjct: 629 NTSTSLLMGSTASVTPTFSRFFIEKNQRG------------------------------- 657

Query: 829 GSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
                   IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D    
Sbjct: 658 -------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKD 710

Query: 883 KKLDFIYR---QAWLMGLKTTYYLRS 905
            K   IY     AW  G K+ YY+R+
Sbjct: 711 IKAKDIYDTLITAWKEGCKSVYYIRT 736


>gi|167462364|ref|ZP_02327453.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 729

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 237/669 (35%), Positives = 336/669 (50%), Gaps = 82/669 (12%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
              +++ ERD  F Y+GL+ L DRY     +G   E+PQ  FM +AM L + E E  +  
Sbjct: 101 FGREIEPERDKLFNYIGLKTLADRYLAKSYDGEVYELPQERFMIIAMTLMMYEREDHRAD 160

Query: 340 V--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           +  E Y  LS+ +   +TPTL N+G    QLSSCF+  V D L  I+ +  + AML+K  
Sbjct: 161 LVKEAYWALSNLYMTVATPTLANAGLSFGQLSSCFIDIVDDSLRSIYDSNTDVAMLSKNG 220

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G     +R  G+ I G  G S GVIP+++  N+TAV+V+Q G+RKG++  YL+ WH 
Sbjct: 221 GGIGVYVGKLRARGSDIKGFKGVSSGVIPWVRQLNNTAVSVDQLGRRKGSIAVYLDVWHK 280

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD 512
           D+  FLDL+ N GD+R R HD+     IPDLFM+ V     W LF P EV       L D
Sbjct: 281 DILAFLDLKLNNGDERLRAHDIFPGVCIPDLFMESVRDRGDWYLFDPHEVRRIMGYSLED 340

Query: 513 LYGKE-FEIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            Y +E  E ++ + YE   D  E+   R + A+ + + ++    ETG P++ ++D  N  
Sbjct: 341 FYDEEKGEGSFRQKYEECVDSPELAKVR-VPAIEIMKSIMKSQLETGTPYMFYRDEANRM 399

Query: 571 SPQQHVGVVHSSNLCTEITLNSS-----SEET---------------AVCNLGSINLLAH 610
           +P  H G+++ +NLCTEI  N S      EET                VCNL SINL   
Sbjct: 400 NPNGHAGMIYCTNLCTEIMQNMSPTVVVEEETDRDGNIITTKEPGDFVVCNLSSINLTRA 459

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHTHRAIGLGLMGFQSALH 668
                  Y+ L   I   VR+LDNVIDIN   IE  +A  +N  +RAIGLG  G+   L 
Sbjct: 460 -------YEVLDRLIPIQVRMLDNVIDINADKIEVQQAVVTNRKYRAIGLGTFGWHHLLA 512

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +  I + S +A   A+E  E I++  I AS  LA E+G Y +++ S W  G + I     
Sbjct: 513 VRGIQWESEDAATFANELYEKIAYLTIRASCMLAAEKGPYPAYEVSDWSTGDYFIKH--- 569

Query: 729 LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
               R   L M +     W++L   V   G+RN   MA+AP  + A I G +  IDP + 
Sbjct: 570 -GYARPGFLEMKKGDLTDWEDLADNVTIYGIRNGYLMAVAPNMSTAKIGGSTDGIDPIFM 628

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +        V     V +L    +W                           ++ +
Sbjct: 629 RTYSEEKSKYKIPVT----VPDLTTSTMW---------------------------LYKS 657

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLR 904
           AF ID  W I   + RQ+ IDQ  S NLY+  P+G   K L  ++  AW  GLK+TYYLR
Sbjct: 658 AFNIDQTWSIRQNAARQRHIDQGVSFNLYV--PNGVKAKDLLGLHMLAWESGLKSTYYLR 715

Query: 905 SRSATSVEK 913
           S + T +E+
Sbjct: 716 S-ATTEIEE 723


>gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F57]
          Length = 788

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/451 (42%), Positives = 274/451 (60%), Gaps = 20/451 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L        Y K    T +       EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDL--------YHKVSGFTGYRH---LKEYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ L+DRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+  D   IK +  I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEK--DPKIIKEY--INAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           FKD  N  +P  H G++ SSNLCTEI  N++
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTA 434



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/323 (39%), Positives = 178/323 (55%), Gaps = 39/323 (12%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TAVCNL SINL     N + D  ++   +   VR+LDNVID+N +   K K +N  +RA
Sbjct: 493 QTAVCNLASINLSK--INTEEDIKRVVPIM---VRLLDNVIDLNFYPNRKVKATNLQNRA 547

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L    I + S E +E  D  ME IS+HAI  S  LA+E+G Y  F+ S 
Sbjct: 548 IGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFENSE 607

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +GVFPID     A    E  +   +   W  L+++VK  GMRN   MAIAPT++I+ +
Sbjct: 608 WSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLREKVKANGMRNGYLMAIAPTSSISIL 666

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +Q+I+P Y+  + + N+SG   VV   L  E      W+                  
Sbjct: 667 VGTTQTIEPIYKKKWFEENLSGLIPVVVPNLSAE-----TWN------------------ 703

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAW 893
                    + +A++I+   LI++A+ RQKWIDQ QS+N++L  +  SGK L  IY  AW
Sbjct: 704 --------FYTSAYDINAKDLIKAAAVRQKWIDQGQSINVFLRIENASGKTLHEIYTLAW 755

Query: 894 LMGLKTTYYLRSRSATSVEKSTL 916
            +GLK+TYYLRS S +  EKS L
Sbjct: 756 KLGLKSTYYLRSESPSIDEKSVL 778


>gi|285016982|ref|YP_003374693.1| ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472200|emb|CBA14707.1| probable ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans]
          Length = 803

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 248/760 (32%), Positives = 373/760 (49%), Gaps = 106/760 (13%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + LS  ++   LI  + + ++   P +    AR  L++L        YK+  K   ++  
Sbjct: 92  ESLSADEMVDYLIREAESRVDIATPEWEYFAARLYLDRL--------YKRASKNRFYDAG 143

Query: 250 CLYPEYFC---RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y  Y        + GV +  + ++    +L      +  ERD  F Y GL +L  RY 
Sbjct: 144 EKYGSYVGLQESLADRGVYSINILKNYSKEELAEAGRMIDPERDKLFAYNGLYLLATRYL 203

Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSG 362
              N  ++ E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +TPTL N+G
Sbjct: 204 ATDNSRKVYELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLSNAG 263

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S 
Sbjct: 264 KIGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVKNSSG 323

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ TA
Sbjct: 324 GVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTA 383

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRG 532
             +PD+FM+ V +   W LF P EV ++   Y ++          F   YE  E  AD  
Sbjct: 384 VCVPDIFMEAVERRGEWYLFDPYEVKEVKGWYLQDFFDEKRGEGSFRAKYE--EVVADE- 440

Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
             ++ RK + A+ ++++++    ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N
Sbjct: 441 --RIGRKVVKAIDMFKRIMVSQLETGNPFMFYRDEVNRMNPNKHQGMVYSSNLCTEILQN 498

Query: 592 SS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLASTIRTAV 629
            S                   + +  VCNL S+N L      Q D    D L   IR  V
Sbjct: 499 MSPTRVIQEMISGDQIVTTKQAGDFVVCNLSSVN-LGRAVTAQPDLLSPDILERLIRVQV 557

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + S +A + +D   E 
Sbjct: 558 RMLDNVIDLNDLPVPQATITNQKYRAIGLGTFGWHHLLAQKGIEWNSRQAEDYSDTLYER 617

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++  I AS+ LAQE+GAY  FKGS W  G +               +        W EL
Sbjct: 618 INYLTIQASLALAQEKGAYKVFKGSDWQNGEY--------------FSKRGYDSAQWQEL 663

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
             +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        VV   L   
Sbjct: 664 AAQVSVHGVRNAWMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVVAPGLT-- 721

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                      +    Y++                   A+++D    +   +RRQ+ +DQ
Sbjct: 722 -----------VDTYPYYEKG-----------------AYKVDQFASVRQNARRQRHVDQ 753

Query: 870 AQSLNLYLDEPSGKK----LDFIYRQAWLMGLKTTYYLRS 905
           + S N Y+  PSG +    LD ++  AW  GLKTTYY+RS
Sbjct: 754 SISFNFYV--PSGIRAGTLLD-LHMTAWKEGLKTTYYVRS 790


>gi|262067227|ref|ZP_06026839.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379060|gb|EFE86578.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 755

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 237/801 (29%), Positives = 389/801 (48%), Gaps = 112/801 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ T+   +E +++ V  R L+ +  REV            +H  +  Y + F + I+  
Sbjct: 65  TAVTMTSFEESDWSYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHM 111

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           V+  L  E ++ +   +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ  
Sbjct: 112 VELGLYDERLLTYTEEELNQISQLIDLNRDMVYDYAGANMLVNRYLIKHDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T + 
Sbjct: 172 FMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTLF P E+      +L +LYG EFE  YE  E+  D   IK+ R +SA  L++ ++  
Sbjct: 352 SWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598
             ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE          
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSE 468

Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLMY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTVGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + +
Sbjct: 581 SKWDQAIF-------FGKKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G                                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657

Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
              IP  +K +   A+       ++P+  ++  ++   W  Q  S+ +  D     K   
Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IYR---QAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLITAWEEGCKSVYYIRT 736


>gi|110802610|ref|YP_699621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens SM101]
 gi|110683111|gb|ABG86481.1| ribonucleoside-diphosphate reductase, alpha chain [Clostridium
           perfringens SM101]
          Length = 743

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 230/732 (31%), Positives = 366/732 (50%), Gaps = 96/732 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV T    +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRTNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL ++ N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIKTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRS 907
           G+K+ YY+RS+S
Sbjct: 721 GVKSIYYVRSKS 732


>gi|168213272|ref|ZP_02638897.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|182625796|ref|ZP_02953563.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
 gi|170715231|gb|EDT27413.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908952|gb|EDT71439.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 743

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 230/734 (31%), Positives = 366/734 (49%), Gaps = 96/734 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRSAT 909
           G+K+ YY+RS+S +
Sbjct: 721 GVKSIYYVRSKSLS 734


>gi|18311343|ref|NP_563277.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens str. 13]
 gi|18146027|dbj|BAB82067.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           perfringens str. 13]
          Length = 743

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGICYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRS 907
           G+K+ YY+RS+S
Sbjct: 721 GVKSIYYVRSKS 732


>gi|168210335|ref|ZP_02635960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711563|gb|EDT23745.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 743

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 230/734 (31%), Positives = 366/734 (49%), Gaps = 96/734 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K    +  A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIEANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRSAT 909
           G+K+ YY+RS+S +
Sbjct: 721 GVKSIYYVRSKSLS 734


>gi|110800461|ref|YP_697051.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens ATCC 13124]
 gi|168216674|ref|ZP_02642299.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
 gi|110675108|gb|ABG84095.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens ATCC 13124]
 gi|182381125|gb|EDT78604.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
          Length = 743

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRS 907
           G+K+ YY+RS+S
Sbjct: 721 GVKSIYYVRSKS 732


>gi|168205190|ref|ZP_02631195.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170663300|gb|EDT15983.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 743

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 230/732 (31%), Positives = 365/732 (49%), Gaps = 96/732 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S+ E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSTMEIEQTEIKDENGDVVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRS 907
           G+K+ YY+RS+S
Sbjct: 721 GVKSIYYVRSKS 732


>gi|225386406|ref|ZP_03756170.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
 gi|225047487|gb|EEG57733.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
          Length = 761

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 249/767 (32%), Positives = 381/767 (49%), Gaps = 104/767 (13%)

Query: 181 VLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYK 238
           +LS  +++    G+  ++L  +LI S+  L  +E P +  + AR    +   E+      
Sbjct: 48  ILSNKFRSFRKPGMKRTELYDSLIQSAAELTSREAPRWEFIAARIRYSQFGEEL------ 101

Query: 239 KPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
             ++     +   Y +  Y  R   EG+    + E   + ++      L  ER+  F Y 
Sbjct: 102 -EERLAGLGISGFYDKLVYLTR---EGLYGDYILEHYTEAEIREAETFLDPERNKLFTYS 157

Query: 297 GLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFM 352
           GL +L  RY +  N  R  +E PQ  ++ +A+ LA++E    + A    FY++LS+    
Sbjct: 158 GLDLLIKRYVIQ-NHKRQPLETPQEMYLGIALHLAMEEKPDCRMAWVRRFYDMLSNMQVT 216

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TPTL N+     QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G 
Sbjct: 217 MATPTLSNARKPFHQLSSCFIDTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRATGG 276

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G + GVI ++K+ NDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDD
Sbjct: 277 SIRGFEGAAGGVIRWVKLVNDTAVAVDQLGMRQGAVAVYLDAWHKDLPEFLQLRTNNGDD 336

Query: 473 RRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENY 525
           R + HD+  A   PDLF K   +  N  W L  P E+       L D +G+E+E  Y   
Sbjct: 337 RMKAHDVFPAICYPDLFWKMAKEDLNQPWHLMCPHEILQVKGYSLEDSFGEEWERRY--L 394

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +  AD G I   R ++   + R +L    ETG P+   +D  N  +P  H G+++ SNLC
Sbjct: 395 DCVAD-GRISK-RTVALKDIVRLILRSQVETGTPFTFNRDVVNRANPNGHKGMIYCSNLC 452

Query: 586 TEITLNSSSEET-----------------------AVCNLGSINLLAHFAN-NQFDYDKL 621
           TEI  N +  ET                        VCNL S+ L     N +  D   +
Sbjct: 453 TEIAQNMAGIETVSTEIREENGDTVVVTTTKAGEFVVCNLASLCL----GNIDVTDEAAV 508

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +   +AVR LDNVI +N + +  AK +N  +R+IGLG+ G+   L    I + S E + 
Sbjct: 509 RAVTASAVRALDNVIGLNFYPLPYAKITNRRYRSIGLGVSGYHHMLAKNGIAWESEEHLR 568

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ADE  E I+F A+ AS +LA E+G+Y  F+GS W+ G +  D  G   E          
Sbjct: 569 FADEVFERINFAAVEASSDLAAEKGSYDYFEGSDWETGAY-FDKRGYTGE---------- 617

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               WD L+++V   GMRN+  +A+APT++ + +CG +  +DP  +  +++         
Sbjct: 618 ---KWDGLRRKVARQGMRNAYLVAVAPTSSTSILCGTTAGVDPVMKRYFLEEKKHAILPR 674

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V      EL  R  W                           ++  A  +D  W + +A 
Sbjct: 675 V----APELTPRTYW---------------------------LYKEAHLVDQTWSVRAAG 703

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            RQ+ IDQAQS+NLY+ +E + +++  +Y QAW  G+KT YY+RS++
Sbjct: 704 ARQRHIDQAQSVNLYITNEYTMRQVLNLYIQAWEEGVKTIYYVRSKA 750


>gi|19703450|ref|NP_603012.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713528|gb|AAL94311.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 755

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 238/801 (29%), Positives = 388/801 (48%), Gaps = 112/801 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ T+   +E ++A V  R L+ +  REV            +H     Y + F + I + 
Sbjct: 65  TAVTMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +  L  E ++ +   +L  +A  +   RD  ++Y G  +L +RY +  +G   E+PQ  
Sbjct: 112 TELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMLVNRYLIKYDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N       LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L++ ++  
Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598
             ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE          
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468

Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLLY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASTLLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQG+F         + R+    N   +  W+E+   V+T G+RN    AIAP  + +
Sbjct: 581 SKWDQGIF-------YGKKREWYDTNSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G                                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657

Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
              IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D     K   
Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IY---RQAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736


>gi|169347148|ref|ZP_02866090.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296831|gb|EDS78960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 743

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 230/734 (31%), Positives = 365/734 (49%), Gaps = 96/734 (13%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP + ++ A+  ++ L  EV      +     +        E      ++G+  + + ++
Sbjct: 60  EPRWQEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKEL----TDKGLYGKYILDN 115

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ 
Sbjct: 116 YSKEDIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIP 175

Query: 332 ETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           E +KEKR   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L 
Sbjct: 176 E-KKEKRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLD 234

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             + ++K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V
Sbjct: 235 NFSKVSKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSV 294

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDE 506
             +L+ WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E
Sbjct: 295 AIWLDAWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHE 354

Query: 507 VS-----DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +       L D YG+E+E  Y  YE  + DR E +V   +S   + R ++    ETG P+
Sbjct: 355 IKTVKGYSLEDFYGEEWEKKY--YECVEDDRIEKRV---MSVKDIVRLIIKSAAETGTPF 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------------- 597
             ++D  N  +P +H G+++SSNLCTEI  N S  E                        
Sbjct: 410 AFYRDTVNKFNPNKHKGMIYSSNLCTEIMQNMSVMEIEQTEIKDENGDVVVIEKTKPGDF 469

Query: 598 AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNL S+ L     N     D ++   + T +R +DNVID+N +++  A+ +N  +RA+
Sbjct: 470 VVCNLSSVVL----GNVDVTSDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAV 525

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W
Sbjct: 526 GLGTSGYHHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDW 585

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D   +   +   W ELK+ +   GMRN    A+AP  + A + 
Sbjct: 586 SNG--------------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLA 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S+ +DP     +++         +   +   L Q + W                    
Sbjct: 632 GTSEGVDPVMNRFWLEEKKGS----ITPKVAPGLCQENFW-------------------- 667

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   
Sbjct: 668 -------YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKN 720

Query: 896 GLKTTYYLRSRSAT 909
           G+K+ YY+RS+S +
Sbjct: 721 GVKSIYYVRSKSLS 734


>gi|296329017|ref|ZP_06871524.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153910|gb|EFG94721.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 755

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 237/801 (29%), Positives = 388/801 (48%), Gaps = 112/801 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ T+   +E ++A V  R L+ +  REV            +H     Y + F + I + 
Sbjct: 65  TAVTMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +  L  E ++ +   +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  
Sbjct: 112 TELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N       LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L++ ++  
Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598
             ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE          
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468

Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLLY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQG+F         + R+   +N   +  W+E+   V+T G+RN    AIAP  + +
Sbjct: 581 SKWDQGIF-------YGKKREWYDINSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G                                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657

Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
              IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D     K   
Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IY---RQAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736


>gi|294784668|ref|ZP_06749956.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486382|gb|EFG33744.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
          Length = 755

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 240/801 (29%), Positives = 384/801 (47%), Gaps = 102/801 (12%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199
           +  + K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQ 59

Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254
            +LI ++  +   +E ++A V  R L+ +  REV  +    Y    K     ++  LY E
Sbjct: 60  ASLINTAVAMTTFEESDWAYVAGRLLMMEAEREVFHSRGFSYGNFPKTIRKMIELGLYDE 119

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               Y EE              +L  +A  +   RD  ++Y G  +  +RY +  +G   
Sbjct: 120 RLLSYTEE--------------ELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTY 165

Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           E+PQ  FM ++M LAL E E E R     +FYN LS      +TP L N    H  LSSC
Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSC 225

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+T + D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ 
Sbjct: 226 FITAIDDNIESIFYIIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMK
Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345

Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           RV  N  WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L+
Sbjct: 346 RVKNNEPWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598
           + ++    ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE    
Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNT 462

Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                       CNL SINL       +   D+L   +  AVR LDN ID+    ++++ 
Sbjct: 463 SIRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESN 516

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K N  +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGA
Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGA 574

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +FKGS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIA
Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + + G + S+ P++   +++ N  G         V  LK R  W           
Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRGAIPRT----VKHLKDR-AW----------- 671

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            +     ++P+  ++  ++   W+ Q  S+ +  D     K   
Sbjct: 672 ----------------FYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IY---RQAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLMTAWEEGCKSVYYIRT 736


>gi|256027985|ref|ZP_05441819.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D11]
 gi|289765930|ref|ZP_06525308.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
 gi|289717485|gb|EFD81497.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
          Length = 755

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 240/801 (29%), Positives = 385/801 (48%), Gaps = 102/801 (12%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199
           +  + K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59

Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254
            +LI ++ ++   +E +++ V  R L+ +  REV  +    Y    K     ++  LY +
Sbjct: 60  ASLINTAVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYDNFPKTIRKMVELGLYDK 119

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               Y EE      LH+     D+          RD  ++Y G  +  +RY +  +G   
Sbjct: 120 RLLSYTEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKHDGKTY 165

Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           E+PQ  FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSC
Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSC 225

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+T + D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ 
Sbjct: 226 FITAIDDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMK
Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345

Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           RV  N  WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L+
Sbjct: 346 RVKNNETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598
           + ++    ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE    
Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNT 462

Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                       CNL SINL       +   ++L   +  AVR LDN ID+    ++++ 
Sbjct: 463 SIRKSEMGEIHTCNLISINL------TELTSEELEKYVALAVRALDNTIDLTVTPLKESN 516

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K N  +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGA
Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGA 574

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +FKGS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIA
Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + + G + S+ P++   +++ N  G         V  LK R  W           
Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRGAIPRT----VKHLKDR-AW----------- 671

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            +     ++P+  ++  ++   W+ Q  S+ +  D     K   
Sbjct: 672 ----------------FYPEFKNVNPISYVKVMAKIGSWVTQGVSMEMVFDLNKDIKAKN 715

Query: 888 IY---RQAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDALMTAWEEGCKSVYYIRT 736


>gi|256846216|ref|ZP_05551674.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719775|gb|EEU33330.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 755

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 236/806 (29%), Positives = 388/806 (48%), Gaps = 112/806 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199
           +  + K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59

Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            +LI ++ ++   +E ++A V  R L+ +  REV            +H     Y + F +
Sbjct: 60  ASLINTAVSMTTFEESDWAYVAGRLLMMEAEREV------------YHSRGFSYGD-FSK 106

Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
            I + V+  L  E ++ +   +L  +   +   RD  ++Y G  +  +RY +  +G   E
Sbjct: 107 TIRKMVELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYE 166

Query: 316 MPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           +PQ  FM ++M L L E E E R     EFYN LS      +TP L N    H  LSSCF
Sbjct: 167 LPQETFMAISMMLVLNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCF 226

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +T + D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ N
Sbjct: 227 ITAIDDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVN 286

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKR
Sbjct: 287 DTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKR 346

Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           V  N  WTL  P E+      +L +LYG EFE  YE  E  ++   IK+ + +SA  L++
Sbjct: 347 VKNNEAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSN---IKLKKVLSAKELFK 403

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLN---------- 591
            ++    ETG P+I FKD  N  +   H+G++ + NLC E       T+N          
Sbjct: 404 SIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEKEDGNTS 463

Query: 592 ---SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
              S   E   CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K
Sbjct: 464 IRKSEMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNK 517

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N  +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY
Sbjct: 518 HNLLYRTIGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAY 575

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +FKGS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP
Sbjct: 576 KAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAP 628

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + G + S+ P++   +++ N  G                               
Sbjct: 629 NTSTSLLMGATASVTPTFSRFFIEKNQRG------------------------------- 657

Query: 829 GSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
                   IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D    
Sbjct: 658 -------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKD 710

Query: 883 KKLDFIYR---QAWLMGLKTTYYLRS 905
            K   IY     AW    K+ YY+R+
Sbjct: 711 IKAKDIYDTLITAWEESCKSVYYIRT 736


>gi|255658864|ref|ZP_05404273.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849269|gb|EEX69276.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
          Length = 755

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 232/694 (33%), Positives = 354/694 (51%), Gaps = 105/694 (15%)

Query: 258 RYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE 315
           RY+  +G+    + E   + +L   A  +  ER+  + Y GL +L  RY +H + G  +E
Sbjct: 112 RYLTAKGLYGSYILEHYTERELSAAARFMAEERNHLYTYAGLDLLLSRYVIHTHHGVALE 171

Query: 316 MPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  ++ +A+ LA+ E    +      FY++LS      +TPTL N+   + QLSSCF+
Sbjct: 172 SPQEMYLGIALHLAMLELPAVRMDWVRRFYDMLSLQQVTMATPTLANARKPYHQLSSCFI 231

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ +L   A ++K+ GG+G  +  VR  GA I G  G + GVI ++++ ND
Sbjct: 232 DTVPDSLEGIYRSLDSFAKVSKWGGGMGLYFGKVRATGAAIRGFEGAAGGVIRWIRLVND 291

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K  
Sbjct: 292 TAVAVDQLGVRQGACAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKLA 351

Query: 494 TQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVA 544
            ++  A W L  P E+       L D +G+E+E  Y     E + D+      R IS   
Sbjct: 352 KEDLDAPWFLMDPHEIEMVMGYALEDFWGEEWEKRYRACVAEPRIDK------RVISVKE 405

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------ 598
           + R +L  + ETG P+  ++D  N  +P    G+++ SNLCTEI  N S  E        
Sbjct: 406 IVRLILKSVVETGTPFAFYRDTVNRLNPNPQAGMIYCSNLCTEIAQNMSPVEAVSTEIRT 465

Query: 599 -----------------VCNLGSINLLAHFANNQFD---YDKLASTIRTAVRVLDNVIDI 638
                            VCNL S+NL       + D   +++L + +RTAVR LDNVID+
Sbjct: 466 KDGDTVVQVTTRPGDFVVCNLASLNL------GRIDVTSHEELRTVVRTAVRALDNVIDL 519

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +  AK +N  +R+IGLG+ G+   L    I + S E +   D+    I++ AI AS
Sbjct: 520 NEAPLAYAKLTNAKYRSIGLGVSGYHHMLAKNAIRWESEEHLAFVDDVFARINYAAIEAS 579

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA E+G Y  F GS W  G +     G ++E              W +L  +V+  GM
Sbjct: 580 SDLAAEKGTYGCFAGSDWQTGAY-FKKRGYMSEA-------------WQKLAAKVRAQGM 625

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN+  +A+APT++ + + G +  +DP                ++  F + E K       
Sbjct: 626 RNAYLLAVAPTSSTSILVGTTAGVDP----------------IMKRFFLEEKK------- 662

Query: 819 AMISDLKYHDGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                     G+I  + RI  DL       + +A  +D  W + +A  RQ+ IDQAQS+N
Sbjct: 663 ----------GAI--LPRIAPDLSMKTYWYYKSAHTVDQNWSVRAAGVRQRHIDQAQSVN 710

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+ ++ + +++  +Y +A+  G+KT YY+RS+S
Sbjct: 711 LYITNDFTFRQVLALYIRAYEEGVKTIYYVRSKS 744


>gi|237743585|ref|ZP_04574066.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
 gi|229432616|gb|EEO42828.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
          Length = 755

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 240/802 (29%), Positives = 383/802 (47%), Gaps = 114/802 (14%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPEYFCRY 259
           ++ ++   +E +++ V  R L+ +  REV  +    Y    K      +  LY E    Y
Sbjct: 65  TAVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGDFSKTIRKMTELGLYDERLLSY 124

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            EE      LH+     D+          RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 125 TEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITEM 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L++ ++ 
Sbjct: 351 ESWTLLDPYEIRKKYGVELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598
              ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE         
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKS 467

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G                                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRG----------------------------------- 657

Query: 833 NIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
               IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D     K  
Sbjct: 658 ---AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAK 714

Query: 887 FIY---RQAWLMGLKTTYYLRS 905
            IY     AW  G K+ YY+R+
Sbjct: 715 DIYDTLMTAWEEGCKSIYYIRT 736


>gi|229916486|ref|YP_002885132.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sp. AT1b]
 gi|229467915|gb|ACQ69687.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sp. AT1b]
          Length = 755

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 245/748 (32%), Positives = 368/748 (49%), Gaps = 114/748 (15%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L  +EP++  V     L +L        Y +  +   +E    Y  ++ + +E     R+
Sbjct: 69  LKAEEPDWTFVATEMYLNRL--------YLEAARNRGYEASMRYGNFY-QLVETLTSKRI 119

Query: 269 LHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMR 323
              +++D     D+ +L   +   RD  F Y+GL+ L DRY    +   + E+PQ  FM 
Sbjct: 120 FTSALLDTYSKEDMDHLETLIDPSRDRLFTYIGLRTLSDRYLGRDHVKNLYELPQERFMV 179

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM L  KE  T + K   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L 
Sbjct: 180 IAMTLMQKEDETTRLKLVEEAYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLR 239

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +  + A L+K  GG+G     +R  G+ I G  G S G +P++K  N+TAV+V+Q 
Sbjct: 240 GIYDSNTDVATLSKGGGGIGVYLGKIRSRGSDIKGFKGVSSGALPWMKQLNNTAVSVDQL 299

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+G++  YL+ WH D+ EFLD + N GD+R RTHD+ T   +PDLFM+ V     W L
Sbjct: 300 GMRQGSIAVYLDIWHKDIFEFLDAKLNNGDERLRTHDLFTGVCLPDLFMRTVEARGDWHL 359

Query: 502 FSPDEVS-----DLHDLY-----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           F P E+       L D +     G  F    E Y    +  E+     + A+ L ++ + 
Sbjct: 360 FDPHEIRTVMGYSLEDYFDESENGGSFT---EKYMECVNTPELSRV-TVPAIDLVKRYMR 415

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595
              ETG P++ F+D  N  +P +H G+++SSNLC+EI  N S+                 
Sbjct: 416 SQLETGTPYMFFRDAVNRANPNKHAGMIYSSNLCSEIAQNMSATTIEEEYTQDGKIVITK 475

Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL SI L           D L   I   +R+LDNVID+N   + +A  +N  
Sbjct: 476 TPGDFVVCNLSSIAL-----ARAVKADVLERLIPIQMRMLDNVIDLNTIEVPQAMITNQK 530

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RA+GLG  G+   L L  I + S +AV+ A++  E I++  I AS+ELA+E+GA+  F+
Sbjct: 531 YRAVGLGTFGWHHLLALEGIRWESVDAVQYAEKLYEKIAYLTIQASMELAKEKGAFGVFE 590

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAP 768
           GS W  G               E    R  R    L WD L + V   G+RN+  MA+AP
Sbjct: 591 GSEWHTG---------------EYFKRRNYRSHDDLDWDGLAEAVHQNGVRNAYMMAVAP 635

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            ++ A I G + SIDP Y+ +Y +   +    V                           
Sbjct: 636 NSSTAIIAGSTASIDPVYKKVYSEEKKNYKIPVT-------------------------- 669

Query: 829 GSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                   +PD   D    + +AFEID +W I   + RQ+ IDQA S NLY+ ++    +
Sbjct: 670 --------VPDLTPDTNWFYKSAFEIDQLWSIRQNAARQRHIDQAISFNLYVKNDVKATE 721

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           L  ++ +AW +G+K+ YY RS   T+VE
Sbjct: 722 LLAMHLEAWSLGMKSIYYTRS---TTVE 746


>gi|160937687|ref|ZP_02085047.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439332|gb|EDP17084.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
          Length = 748

 Score =  346 bits (888), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 256/812 (31%), Positives = 394/812 (48%), Gaps = 127/812 (15%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYD-GLSESDLETALIFS 205
           M D    I  + K LE  +EE     Q     +  L E Y++    G+  ++   ALI S
Sbjct: 1   MADTKVEIDLDYKGLEQCLEEIGRDFQGEGYGLDRLLERYRSFRKPGMGPAEGMEALIRS 60

Query: 206 SRTLIEKE-PNYAKVTARF--------LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +  L  KE P +    AR         + E+L+   +  +Y+K    T    Q LY +Y 
Sbjct: 61  AAELTSKETPLWEFAAARLRYCGFACEVEEQLKGLGIKGLYEKISYLTE---QGLYGDYI 117

Query: 257 CRY-----IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
            ++     IEE        E  +D            ER+  F Y GL +L  RY +  + 
Sbjct: 118 LKHYSREEIEEA-------EGFLDD-----------ERNKLFTYAGLDLLLKRYVIQDHS 159

Query: 312 SR-IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
              +E PQ  ++ +++ LA+KE++  + +    FY++LS      +TPTL N+   + QL
Sbjct: 160 HHPLETPQEMYLGISLHLAMKESKDCRMQWVRRFYDMLSRMQVTMATPTLSNARKPYHQL 219

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++
Sbjct: 220 SSCFIDTVPDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSRIRGFEGAAGGVIRWI 279

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PDL
Sbjct: 280 KLVNDTAVAVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCFPDL 339

Query: 489 FMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD-RGEIKVFRKI 540
           F K   +N    W L  P E+       L D YG+ +E      ER  D  G+ ++ ++ 
Sbjct: 340 FWKMAEENLDQDWHLMCPHEIRTVKGYCLEDCYGELWE------ERYLDCVGDDRISKRT 393

Query: 541 SAVA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597
             +  + R ++    ETG P+I  +D  N  +P  H G+++ SNLCTEI  N S  E+  
Sbjct: 394 VLLKDVVRLIIKSAVETGTPFIFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSPIESVS 453

Query: 598 ---------------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                 VCNL S+ L A   +   D D++     +AVR LDNVI
Sbjct: 454 TQVLEVNGETAVVQTTRPGDFVVCNLASLCLGAIDVD---DPDEVEYIAASAVRALDNVI 510

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + +  A  +N  +R IGLG+ G+   L    I + S E +  AD+  E I + A+ 
Sbjct: 511 DLNFYPLAYAGITNQNYRGIGLGVSGYHHMLAKHGIRWESEEHLVFADQVFERIHYAAVR 570

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA E+G Y  F+GS W  G +  +  GL++               W EL ++V   
Sbjct: 571 ASANLAAEKGCYRYFEGSEWQTGAY-FEKRGLVSR-------------EWKELAEQVAEH 616

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GMRN+  +A+APT++ + + G +  +DP  +  Y++   +     V      +L  R  W
Sbjct: 617 GMRNAYLLAVAPTSSTSILSGTTAGLDPVMKRFYLEEKKNAILPRV----APDLTPRTFW 672

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                      ++ + + +D  W + +A  RQ+ IDQAQS+NLY
Sbjct: 673 ---------------------------LYKSGYTMDQTWTVRAAGVRQRHIDQAQSVNLY 705

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + ++ + ++L  +Y  AW  G+KT YY+RS+S
Sbjct: 706 ITNDYTMRQLLNLYILAWESGVKTLYYVRSKS 737


>gi|34763896|ref|ZP_00144798.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886330|gb|EAA23603.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 755

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 237/802 (29%), Positives = 382/802 (47%), Gaps = 114/802 (14%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKK-PQKATHHEMQCLYPEYFCRY 259
           ++  +   +E +++ V  R L+ +  REV  +    Y   P+         LY E    Y
Sbjct: 65  TAVAMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGNFPKTIRKMTELGLYDERLLSY 124

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            EE              +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 125 TEE--------------ELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     +FYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L++ ++ 
Sbjct: 351 ETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598
              ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE         
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEENGNTSIRKS 467

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTVGVGAMGLADYLAREYMIY--EESINEINEIFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYNTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G                                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRG----------------------------------- 657

Query: 833 NIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
               IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D     K  
Sbjct: 658 ---AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAK 714

Query: 887 FIY---RQAWLMGLKTTYYLRS 905
            IY     AW  G K+ YY+R+
Sbjct: 715 DIYDTLMTAWEEGCKSVYYIRT 736


>gi|254303615|ref|ZP_04970973.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323807|gb|EDK89057.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 755

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 236/801 (29%), Positives = 386/801 (48%), Gaps = 112/801 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACEGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  +   +E +++ V  R L+ +  REV            +H     Y + F + I + 
Sbjct: 65  TAVAMTTFEESDWSYVAGRLLMMEAEREV------------YHSRGFSYGD-FSKTIRKM 111

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           V+  L  E ++ +   +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  
Sbjct: 112 VELGLYDERLLSYTEEELNQIAQLIDVNRDMVYDYAGANMFVNRYLIKYDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E   E R     EFYN LS      +TP L N    H  LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKAGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L++ ++  
Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-------- 598
             ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE          
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEEGNTSIRRSE 468

Query: 599 -----VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLLY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + +
Sbjct: 581 SKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G                                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRG------------------------------------ 657

Query: 834 IERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
              IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D     K   
Sbjct: 658 --AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKD 715

Query: 888 IYR---QAWLMGLKTTYYLRS 905
           IY     AW  G K+ YY+R+
Sbjct: 716 IYDTLITAWEEGCKSVYYIRT 736


>gi|261404532|ref|YP_003240773.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           sp. Y412MC10]
 gi|261280995|gb|ACX62966.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. Y412MC10]
          Length = 777

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213
           ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S+  L+ KE
Sbjct: 13  LAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 72

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            PN+    AR  L  L ++  T    +  KA   E    +       +++G+    L  S
Sbjct: 73  EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 129

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
                +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M +AM L   
Sbjct: 130 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMVIAMFLMHN 189

Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
           E   ++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L GIF +  
Sbjct: 190 EPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 249

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q G RKGA+
Sbjct: 250 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 309

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+LF P EV 
Sbjct: 310 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWSLFCPHEVK 369

Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550
            +    D  G+   +  + Y+     GE   FR+               + A+ + ++++
Sbjct: 370 KIMGWKDENGRPLGLE-DFYDHTQGEGE---FRQKYAEAVANPLLPRITVQAIDIMKRIM 425

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597
               ETG P++ ++D  N  +P    G+++SSNLCTEI  N S      EE         
Sbjct: 426 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 485

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL SI+L             L   +   VR+LDNVIDIN   + +A+
Sbjct: 486 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 540

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+E+G 
Sbjct: 541 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 600

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  FKGS W+ G +             E      +   W EL++ V+  G+RN+   AIA
Sbjct: 601 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 656

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + I G + SIDP Y+ L  +   +  + V N     +L ++ +W           
Sbjct: 657 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 701

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  P  +  +F
Sbjct: 702 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 744

Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909
             ++  AW  G+K+TYY+RSR+ T
Sbjct: 745 LELHLHAWKAGIKSTYYVRSRALT 768


>gi|260497962|ref|ZP_05816078.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196470|gb|EEW94001.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
          Length = 755

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 239/807 (29%), Positives = 385/807 (47%), Gaps = 114/807 (14%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLE 199
           +  + K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQ 59

Query: 200 TALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPE 254
            +LI ++ ++   +E +++ V  R L+ +  REV  +    Y    K     ++  LY E
Sbjct: 60  ASLINTAVSMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGDFPKTIRKMVELGLYDE 119

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               Y EE      LH+     D+          RD  ++Y G  +  +RY +  +G   
Sbjct: 120 RLLSYTEEE-----LHQITQLIDI---------NRDMVYDYAGAHMFVNRYLIKHDGKTY 165

Query: 315 EMPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           E+PQ  FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSC
Sbjct: 166 ELPQETFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSC 225

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+T + D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ 
Sbjct: 226 FITAIDDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRII 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMK
Sbjct: 286 NDTAVAVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMK 345

Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           RV  N  WTL    E+      +L +LYG EFE  YE  E   +   IK+ + +SA  L+
Sbjct: 346 RVKNNETWTLLDSYEIRKKYGIELCELYGYEFENLYEKIENDPN---IKLKKVLSAKELF 402

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA-- 598
           + ++    ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE    
Sbjct: 403 KSIMKTQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNT 462

Query: 599 -----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                       CNL SINL       +   ++L   +  AVR LDN ID+    ++++ 
Sbjct: 463 SIRKSEMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESN 516

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K N  +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGA
Sbjct: 517 KHNLLYRTIGVGAMGLADYLAREYMIY--EESINEIDELFERIALYSIKASALLAKDRGA 574

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +FKGS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIA
Sbjct: 575 YKAFKGSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIA 627

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + + G + S+ P++   +++ N  G                              
Sbjct: 628 PNTSTSLLMGSTASVTPTFSRFFIEKNQRG------------------------------ 657

Query: 828 DGSIGNIERIPDDLKKIHATAF------EIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                    IP  +K +   A+       ++P+  ++  ++   W+ Q  S+ +  D   
Sbjct: 658 --------AIPRTVKHLKDRAWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNK 709

Query: 882 GKKLDFIY---RQAWLMGLKTTYYLRS 905
             K   IY     AW  G K+ YY+R+
Sbjct: 710 DIKAKDIYDALMTAWEEGCKSVYYIRT 736


>gi|297582632|ref|YP_003698412.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           selenitireducens MLS10]
 gi|297141089|gb|ADH97846.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           selenitireducens MLS10]
          Length = 735

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 250/757 (33%), Positives = 368/757 (48%), Gaps = 118/757 (15%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP++    A    E L        Y+   K  H      Y E F   I EGV+  L    
Sbjct: 33  EPHWTYKAAALFAEDL--------YESAAKTRHLNTGEAY-EDFPGLIFEGVRLGLYDNR 83

Query: 273 MMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMG 327
           + ++    +L   A+ L  ++D  F Y GL +L DRY     +G   E+PQ  F+ +A+ 
Sbjct: 84  LTEYYSPAELDEAASMLNPDQDRLFTYPGLFLLADRYLTRTTDGELFELPQERFLVIALV 143

Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           L + E ++++ A+  E Y  +S  +   +TPTL N+G  H QLSSCF+ TV D L GI+ 
Sbjct: 144 LMMHEPQEKRLALVREAYWAMSHLYMTVATPTLANAGKSHGQLSSCFIDTVDDSLDGIYL 203

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              + A L+K  GG+G  +  VR LG+ I G  G S GVIP+++  N+TAV+V+Q G+R+
Sbjct: 204 NNWDIARLSKDGGGIGVYYGKVRALGSDIKGFKGNSSGVIPWIRQLNNTAVSVDQLGQRQ 263

Query: 446 GAVCAYLETWHIDV-EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-------A 497
           GA+  YL+ +H D+   FLDL+ N GD+RR+ HD+ T   +PDLFMK++ +         
Sbjct: 264 GAIAVYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVCLPDLFMKKLEETDENGRSIG 323

Query: 498 GWTLFSPDEVSDLHDLYGKEFE-IAYENYERQADRGEI---------------KVFRKIS 541
            W +F P EV  +     K+   +  E++  +ADR                  + +R + 
Sbjct: 324 EWHVFCPHEVKQIMGWKDKDGNPLGLEDFFDEADRPYFTEKYEEAVHHPLLPRETYRAMD 383

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-----VVHSSNLCTEITLNSS--- 593
            +A   +M+    ETG P+  ++D  N ++P +  G      ++SSNLCTEI  N S   
Sbjct: 384 IMA---RMMVSQLETGTPYFFYRDEVNRQNPNKIAGEPGRTTIYSSNLCTEIAQNMSPSV 440

Query: 594 ------SEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 +EE             VCNL S+NL      N  D D L   I   +R+LDNVI
Sbjct: 441 ITKEYETEEGDQVIVRKPGDFVVCNLSSVNL-----GNAGDPDILKRLIPIQMRMLDNVI 495

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N   +++A+++N  +RA+GLG  G+   L    I + S EAV+ AD   E I++ AI 
Sbjct: 496 DLNQLPVQQARRTNSRYRAVGLGTFGWHHYLAKNQIHWESDEAVQEADRLYETIAYLAIE 555

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+E+GAY +FKGS W+ G +         E R   + N      W  LKK V   
Sbjct: 556 ASAALAREKGAYPAFKGSEWESGRY--------FERRGYTSAN------WQTLKKTVSES 601

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+AP ++ A I G +  IDP Y   + +   +  F V    L +        
Sbjct: 602 GVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEFAEEKKNFKFLVTAPELDH-------- 653

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                 +       T   +D  W I   + RQK IDQ  S NLY
Sbjct: 654 ----------------------NTYPYYQKTRHTLDQTWSIRQNAARQKHIDQGVSFNLY 691

Query: 877 LDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +      K+L  ++ +AW  GLKTTYY+RS S   +E
Sbjct: 692 VHHAIRAKELLSLHLEAWKQGLKTTYYIRSTSQEEIE 728


>gi|329928245|ref|ZP_08282156.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
 gi|328937963|gb|EGG34364.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
          Length = 792

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213
           ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S+  L+ KE
Sbjct: 28  LAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 87

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            PN+    AR  L  L ++  T    +  KA   E    +       +++G+    L  S
Sbjct: 88  EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 144

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
                +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M +AM L   
Sbjct: 145 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMVIAMFLMHN 204

Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
           E   ++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L GIF +  
Sbjct: 205 EPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 264

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q G RKGA+
Sbjct: 265 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 324

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+LF P EV 
Sbjct: 325 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWSLFCPHEVK 384

Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550
            +    D  G+   +  + Y+     GE   FR+               + A+ + ++++
Sbjct: 385 KIMGWKDENGRPLGLE-DFYDHTQGEGE---FRQKYAEAVANPLLPRITVQAIDIMKRIM 440

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597
               ETG P++ ++D  N  +P    G+++SSNLCTEI  N S      EE         
Sbjct: 441 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 500

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL SI+L             L   +   VR+LDNVIDIN   + +A+
Sbjct: 501 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 555

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+E+G 
Sbjct: 556 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 615

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  FKGS W+ G +             E      +   W EL++ V+  G+RN+   AIA
Sbjct: 616 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 671

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + I G + SIDP Y+ L  +   +  + V N     +L ++ +W           
Sbjct: 672 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 716

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  P  +  +F
Sbjct: 717 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 759

Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909
             ++  AW  G+K+TYY+RSR+ T
Sbjct: 760 LELHLHAWKAGIKSTYYVRSRALT 783


>gi|257468677|ref|ZP_05632771.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062932|ref|ZP_07927417.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688608|gb|EFS25443.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 748

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 240/770 (31%), Positives = 378/770 (49%), Gaps = 99/770 (12%)

Query: 169 ACSGLQDVSSKIVLSETY-KNMY-DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLL 225
           AC GL+     +V  E+Y  ++Y + ++   ++ +LI  +  +   +E ++  V  R L+
Sbjct: 26  ACEGLE---VNMVELESYIDSIYQENITTKKIQESLINQAVAMTSFEESDWTYVAGRLLM 82

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESMMDFDLVYLA 282
            +  REV             H+    Y +++       E+G+    L E   D ++  L 
Sbjct: 83  METEREVF------------HKRGFSYGDFYKTIKTLTEKGIYDSRLQEYTKD-EIKELE 129

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             +   RD  ++Y G  +  +RY L   G+  E+PQ  FM +AM LA+ E ++   A  F
Sbjct: 130 KVIDISRDMMYDYAGANMFVNRYLLKFKGNIYELPQEVFMCIAMLLAINEEDRVAVAKRF 189

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           YN LS      +TP L N       LSSCF+T + D++  IF  +   A ++K  GG+G 
Sbjct: 190 YNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFYNIDTIAKISKSGGGVGL 249

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R   + ++G    S GV+P++K+ NDTAVAVNQ G+R GAV A L++WH+D+E F
Sbjct: 250 NISRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRAGAVTAALDSWHLDIELF 309

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE 517
           L+L+   GD R + +D+     + DLFMKRV +N  WTL  P EV      +L +LYG++
Sbjct: 310 LELQTENGDQRGKAYDIYPQVVLSDLFMKRVEENLEWTLIDPYEVRKKYGVELCELYGEK 369

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  YE  E+      +++ + I A  L+++++ +  ETG P+I FKD  N+ +   H G
Sbjct: 370 FEEIYEKLEKDTS---LELKKVIKARELFKEIMKVQIETGMPYIFFKDRANLMNHNSHKG 426

Query: 578 VVHSSNLCTEITLNSS-----SEETA--------------VCNLGSINLLAHFANNQFDY 618
           ++ + NLC E   N S     +EET                CNL S+NL           
Sbjct: 427 MIGNGNLCMESFSNFSPSKNFAEETVEEKGVRTVNLGEVHTCNLVSLNLAEILK------ 480

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L + + TAVR+LDN ID+    I+++ K N ++R IG+G MG    L    + Y   E
Sbjct: 481 EELENIVDTAVRILDNTIDLTKTPIKESDKHNVSYRTIGVGTMGLADYLAREFMIY--DE 538

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           ++   DE  E I+ ++I +S  LA++RG Y +FKGSLWD+G+F         + R+    
Sbjct: 539 SMNDIDELFEEIALYSIKSSALLAKDRGEYPAFKGSLWDKGLF-------FQKDREWYMK 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           N      W E+ + VK  GMRN    AIAP  + + + G + S++P++   Y++ N  G 
Sbjct: 592 NSKYADKWGEVFELVKKYGMRNGELTAIAPNTSTSLLMGATASVNPTFSRFYIEKNQKGA 651

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V    V  LK R  W                            +     ++P   ++
Sbjct: 652 VPRV----VKYLKDR-AW---------------------------FYPEFKNVNPQTYVK 679

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLKTTYYLRS 905
             SR  KW  Q  S+ L  D     K   IY     AW  G K+ YY+R+
Sbjct: 680 IMSRIGKWTTQGVSMELIFDLNKNIKAKDIYDTFMTAWKNGCKSVYYIRT 729


>gi|21233408|ref|NP_639325.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66770373|ref|YP_245135.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21115248|gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66575705|gb|AAY51115.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 827

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 250/762 (32%), Positives = 377/762 (49%), Gaps = 105/762 (13%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAG 162

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++     +S    +L+     +  ERD  F Y GL +L  R
Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYLLATR 220

Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359
           Y L  + SR   E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +TPTL 
Sbjct: 221 Y-LATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLA 279

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G + 
Sbjct: 280 NAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSN 339

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+
Sbjct: 340 SSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDV 399

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--G 532
            T+  IPDLFM+ V +   W LF P EV       L D Y ++   A  ++ ++ +    
Sbjct: 400 FTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEEVVA 459

Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N
Sbjct: 460 DERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQN 519

Query: 592 SS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRT 627
            S                   + +  VCNL SINL        +Q D    D L   I  
Sbjct: 520 MSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPI 579

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +DE  
Sbjct: 580 QVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELY 639

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-W 746
           E I++  + AS+ELA+E+G YS F+GS W  G               E    R    P W
Sbjct: 640 ERINYLTVQASMELAKEKGTYSVFRGSDWHTG---------------EYFRARDYNSPQW 684

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V    L
Sbjct: 685 LELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL 744

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  D W         Y  G                  A+++D    +   +RRQ+ 
Sbjct: 745 -----SLDTWP-------YYEKG------------------AYKVDQFASVRQNARRQRH 774

Query: 867 IDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 775 IDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814


>gi|319785672|ref|YP_004145147.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464184|gb|ADV25916.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 814

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 260/796 (32%), Positives = 383/796 (48%), Gaps = 102/796 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVS----SKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           ++F+  RLE  ++   +G   +      + VL    +     LS  DL   LI  +   +
Sbjct: 63  LAFDPARLERSIDVIAAGFPQLEIGDYKRAVLGFVARK--PALSADDLVDHLIREAEARV 120

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKA 266
           +   P + +  AR  L +L        YK+  +   ++    Y  Y        + G+ +
Sbjct: 121 DLTAPEWERFAARLYLRRL--------YKRASRNRFYDAGQKYGSYVGLQESLADRGIYS 172

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325
             +  +    +L      ++ ERD  F Y GL +L  RY        + E+PQ  ++ +A
Sbjct: 173 NDILRAYSKEELEEAGRMIEPERDKLFAYNGLYLLATRYLATDTARNVYELPQERWLTIA 232

Query: 326 MGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           + L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L G
Sbjct: 233 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLQNAGKVGGQLSSCFIDTVDDSLQG 292

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +  + A ++K  GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q G
Sbjct: 293 IYDSNTDIARVSKGGGGVGAYLGYVRAAGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQLG 352

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGAV  YL+ WH D+E FLDLR N GD R R HD+ TA  IPDLFM+ V +   W LF
Sbjct: 353 QRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDLFMEAVERRGDWYLF 412

Query: 503 SPDEVSDLHDLYGKEF------EIAYEN-YERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            P EV      Y ++F      E ++ + Y+   + G I   R + A+ L+++++    E
Sbjct: 413 DPHEVKQAKGWYLQDFYDERRGEGSFRSKYQELVEDGRIGR-RTVKAIDLFKRIMVSQLE 471

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596
           TG+P++ ++D  N ++P +H G V+SSNLCTEI  N S                   + +
Sbjct: 472 TGNPFMFYRDEVNRKNPNKHCGTVYSSNLCTEILQNQSPTRMIQEVISGNQIVTTRQAGD 531

Query: 597 TAVCNLGSINLLAHF--ANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             VCNL SINL      A+ Q D   D L   +   VR+LDNVID+N   + +A  +N  
Sbjct: 532 FVVCNLSSINLGRAVVQADGQGDLISDVLERLVPIQVRMLDNVIDLNQLPVPQATITNRR 591

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L L  I + S EA + +D   E I+  AI AS+ELA+E+G Y +F 
Sbjct: 592 YRAIGLGTFGWHHLLALKGIHWDSKEAEDYSDALYERINRLAIQASMELAKEKGTYPAFP 651

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +             E   N      W +L  +V   G+RN   +A+AP  + 
Sbjct: 652 GSDWHTGAY-----------FRERGYNSPE---WLDLAAQVAVNGLRNGWLLAVAPNMST 697

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G S SIDP Y   Y +        V    L  E      W         Y  G   
Sbjct: 698 AQIAGSSASIDPVYSAFYYEEKKDYRRPVAAPGLSLE-----TWP-------YYEKG--- 742

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IY 889
                          A+++D    +   +RRQ+ +DQA S NLY+  PS  +      ++
Sbjct: 743 ---------------AWKVDQFASVRQNARRQRHVDQAISFNLYV--PSSIRASVLLELH 785

Query: 890 RQAWLMGLKTTYYLRS 905
            + W  GLKTTYY+RS
Sbjct: 786 LEGWRQGLKTTYYVRS 801


>gi|188993573|ref|YP_001905583.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735333|emb|CAP53547.1| Ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris]
          Length = 827

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 250/762 (32%), Positives = 377/762 (49%), Gaps = 105/762 (13%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAG 162

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++     +S    +L+     +  ERD  F Y GL +L  R
Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYLLATR 220

Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359
           Y L  + SR   E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +TPTL 
Sbjct: 221 Y-LATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLA 279

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G + 
Sbjct: 280 NAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSN 339

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+
Sbjct: 340 SSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDV 399

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--G 532
            T+  IPDLFM+ V +   W LF P EV       L D Y ++   A  ++ ++ +    
Sbjct: 400 FTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEEVVA 459

Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N
Sbjct: 460 DERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQN 519

Query: 592 SS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRT 627
            S                   + +  VCNL SINL        +Q D    D L   I  
Sbjct: 520 MSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPI 579

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +DE  
Sbjct: 580 QVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELY 639

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-W 746
           E I++  + AS+ELA+E+G YS F+GS W  G               E    R    P W
Sbjct: 640 ERINYLTVQASMELAKEKGTYSVFRGSDWHTG---------------EYFRARDYNSPQW 684

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V    L
Sbjct: 685 LELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL 744

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  D W         Y  G                  A+++D    +   +RRQ+ 
Sbjct: 745 -----SLDTWP-------YYEKG------------------AYKVDQFASVRQNARRQRH 774

Query: 867 IDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 775 IDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814


>gi|323486977|ref|ZP_08092291.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
 gi|323399689|gb|EGA92073.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
          Length = 764

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 238/742 (32%), Positives = 366/742 (49%), Gaps = 98/742 (13%)

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  KE P++  + A  LL + R  +        ++   H +   Y     RY+
Sbjct: 74  LIQAAAELTRKEAPDWEYIAAYLLLVRFRINLR-------EEDKKHGIGSFYDR--IRYL 124

Query: 261 -EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
             E +    + E     +L      +  +RD  F Y GL +L  RY +    +  +E PQ
Sbjct: 125 TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             F+ +++ LA+KE +   + V+ FY++LS+     +TPTL N+   + QLSSCF+ TVP
Sbjct: 185 EMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVP 244

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVA
Sbjct: 245 DSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVA 304

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  
Sbjct: 305 VDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAI 364

Query: 496 NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKM 549
           ++ W L  P E+       L D YG+E+E  Y +  +       ++ +++  +  + R +
Sbjct: 365 DSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKDE-----RIPKRVLPIKDIIRLI 419

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----------- 598
           L    ETG P+   +D  N  +P +H G+++ SNLCTEI  N S  E             
Sbjct: 420 LKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGET 479

Query: 599 ------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                       VCNL S++L      N  D  +L   +R AVR LDNVID+N   +  A
Sbjct: 480 VVVTVTKPGDFVVCNLASLSL---GKINVSDRSELTFLVRCAVRALDNVIDLNFFPVPYA 536

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+G
Sbjct: 537 KINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKG 596

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y  F GS W  G +      +     DE          W  L+++   +G+RN   +A 
Sbjct: 597 CYEYFPGSGWQTGSY----FEMRGYCSDE----------WRRLREKAAAVGLRNGWLIAA 642

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT++ + I G +  +DP     Y++   +G    V      EL     W          
Sbjct: 643 APTSSTSMISGTTAGLDPIMNRFYLEEKKTGLVPRV----APELTPSTYWR--------- 689

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                             +  A  ID  W + +A  RQ+ IDQAQS+NLY+ +  + +++
Sbjct: 690 ------------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQV 731

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             +Y  AW  G+KT YY+RS+S
Sbjct: 732 LELYLLAWKSGVKTIYYIRSKS 753


>gi|315644972|ref|ZP_07898100.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
 gi|315279683|gb|EFU42985.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
          Length = 777

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 250/804 (31%), Positives = 390/804 (48%), Gaps = 97/804 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKE 213
           ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S+  L+ KE
Sbjct: 13  LAFDEIRLSVYADRNLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMSALELVTKE 72

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            PN+    AR  L  L ++  T    +  KA   E    +       +++G+    L  S
Sbjct: 73  EPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGIYREDLLTS 129

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALK 331
                +  L   +   RD  F+Y+GL  L +RY     +G  +E+PQ  +M +AM L   
Sbjct: 130 YTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLATDFDGRVMELPQERYMVIAMFLMHN 189

Query: 332 ETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
           E   ++  +  E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L GIF +  
Sbjct: 190 EPADKRIDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNT 249

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q G RKGA+
Sbjct: 250 DIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAI 309

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+LF P EV 
Sbjct: 310 AVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGICLPDLFMEAVEAREEWSLFCPHEVK 369

Query: 509 DL---HDLYGKEFEIAYENYERQADRGEIKVFRK---------------ISAVALWRKML 550
            +    D  G+   +  + Y++    GE   FR+               + A+ + ++++
Sbjct: 370 KIMGWKDENGRPLGLE-DFYDQAQGDGE---FRQKYAEAVANPQLPRITVQAIDIMKRVM 425

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----SEET-------- 597
               ETG P++ ++D  N  +P    G+++SSNLCTEI  N S      EE         
Sbjct: 426 KSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKDGQTR 485

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                      VCNL SI+L             L   +   VR+LDNVIDIN   + +A+
Sbjct: 486 IVISKIPGDFVVCNLNSIHLARAVPAG-----VLERLVPIQVRMLDNVIDINNIEVLQAQ 540

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+E+G 
Sbjct: 541 YTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAKEKGH 600

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  FKGS W+ G +             E      +   W EL++ V+  G+RN+   AIA
Sbjct: 601 YPKFKGSDWESGEY----FTFRGYTDGEHEGKFVTTEQWRELQQEVQANGVRNAWLFAIA 656

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + I G + SIDP Y+ L  +   +  + V N     +L ++ +W           
Sbjct: 657 PNGSTSIIAGSTASIDPLYELLSYEEKTT--YKVANP--APDLSEKTIW----------- 701

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                            + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  P  +  +F
Sbjct: 702 ----------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYV-RPDIRASEF 744

Query: 888 --IYRQAWLMGLKTTYYLRSRSAT 909
             ++  AW  G+K+TYY+RSR+ T
Sbjct: 745 LELHLHAWKAGIKSTYYVRSRALT 768


>gi|323692022|ref|ZP_08106270.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503945|gb|EGB19759.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 764

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 238/742 (32%), Positives = 366/742 (49%), Gaps = 98/742 (13%)

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  KE P++  + A  LL + R  +        ++   H +   Y     RY+
Sbjct: 74  LIQAAAELTRKEAPDWEYIAAYLLLVRFRINLR-------EEDKKHGIGSFYDR--IRYL 124

Query: 261 -EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
             E +    + E     +L      +  +RD  F Y GL +L  RY +    +  +E PQ
Sbjct: 125 TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             F+ +++ LA+KE +   + V+ FY++LS+     +TPTL N+   + QLSSCF+ TVP
Sbjct: 185 EMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVP 244

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVA
Sbjct: 245 DSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVA 304

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-- 495
           V+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  
Sbjct: 305 VDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAI 364

Query: 496 NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-LWRKM 549
           ++ W L  P E+       L D YG+E+E  Y +  +       ++ +++  +  + R +
Sbjct: 365 DSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKDE-----RIPKRVLPIKDIIRLI 419

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----------- 598
           L    ETG P+   +D  N  +P +H G+++ SNLCTEI  N S  E             
Sbjct: 420 LKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGET 479

Query: 599 ------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                       VCNL S++L      N  D  +L   +R AVR LDNVID+N   +  A
Sbjct: 480 VVVTVTKPGDFVVCNLASLSL---GKINVSDRSELTFLVRCAVRALDNVIDLNFFPVPYA 536

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+G
Sbjct: 537 KINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKG 596

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y  F GS W  G +      +     DE          W  L+++   +G+RN   +A 
Sbjct: 597 CYEYFPGSGWQTGSY----FEMRGYCSDE----------WRRLREKAAAVGLRNGWLIAA 642

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT++ + I G +  +DP     Y++   +G    V      EL     W          
Sbjct: 643 APTSSTSMISGTTAGLDPIMNRFYLEEKKNGLVPRV----APELTPSTYWR--------- 689

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                             +  A  ID  W + +A  RQ+ IDQAQS+NLY+ +  + +++
Sbjct: 690 ------------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQV 731

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             +Y  AW  G+KT YY+RS+S
Sbjct: 732 LELYLLAWKSGVKTIYYIRSKS 753


>gi|210616054|ref|ZP_03290926.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
 gi|210149962|gb|EEA80971.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
          Length = 749

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 248/754 (32%), Positives = 378/754 (50%), Gaps = 109/754 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--------LTTVYKKPQKATHH 246
           E +L+  +  +     ++ P +  + AR LL    RE+        +TT+Y   +K  + 
Sbjct: 53  EENLQLLIKAAVELTTQEAPKWEMIAARLLLFTFERELRKAEESCQITTLY---EKIVYL 109

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             + LY +Y    +E   K     E + +F+  +LA     ER+  F Y GL++L +RY 
Sbjct: 110 TGRGLYGQYI---LENYTK-----EEIDEFE-TFLAP----ERNDLFTYSGLELLLNRYV 156

Query: 307 LHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTR 364
           +H   G  +E PQ  F+ +AM LA+KE +     V+ FY++LS      +TPTL N+   
Sbjct: 157 IHTGQGVALESPQEMFLGIAMHLAMKEQKDRALWVKRFYDMLSKLQVTMATPTLSNARKP 216

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           + QLSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GV
Sbjct: 217 YHQLSSCFIDIVPDSLNGIYRSIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGV 276

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           I ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A  
Sbjct: 277 IRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTNNGDDRMKAHDVFPAVC 336

Query: 485 IPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            PD F ++   N    W L  P E+       L D YG+ ++   E Y       +IK  
Sbjct: 337 YPDYFWEQARDNIEGDWYLMCPHEILTVKGYALEDCYGEAWK---EKYLDCVQDDQIKK- 392

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--- 594
           R +    + R ++    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S    
Sbjct: 393 RVVPIKDIIRLIIKSAVETGTPFTFNRDHVNRMNPNGHKGMIYCSNLCTEIAQNMSGIEE 452

Query: 595 --------------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                                E  VCNL S++L  H   N  D +++A   + AVR LDN
Sbjct: 453 VEERVETVNGETVVVTVTKPGEFVVCNLASLSL-GHL--NVEDGEEIADITKCAVRALDN 509

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID+N   +  AK +N  +R IGLG+ G+   L    I + S + ++   +    I + A
Sbjct: 510 VIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKQGISWESEQHLQFVGDVFSKIHYAA 569

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           I AS E+A+E+G+Y+ F+GS W  G +  D   L  E              W++L+++VK
Sbjct: 570 IEASSEIAKEKGSYTYFEGSDWQTGKY-FDKRHLKTE-------------KWNQLREKVK 615

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN+  +AIAPT++ + I G S  +DP     +++   +G    V      EL    
Sbjct: 616 QQGLRNAYLLAIAPTSSTSIIAGTSAGLDPIMNRYFLEEKKNGLMPRV----APELSMET 671

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            W                            +  A  ID  W + +   RQ+ IDQAQS+N
Sbjct: 672 FW---------------------------YYKNAHYIDQKWSVRACGVRQRHIDQAQSMN 704

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           LY+ +E + +K+  +Y  AW  G+KT YY+RS+S
Sbjct: 705 LYITNEYTFRKVLDLYILAWEEGVKTIYYIRSKS 738


>gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 701

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 342/625 (54%), Gaps = 23/625 (3%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF + Y   +IL +++ L +NG  +E PQ   MRVA+ +     +    A+
Sbjct: 81  LNSAIIYDRDFNYSYTAFKILENKHLLRLNGKVVERPQHMLMRVAVSI---HNDDVDNAI 137

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGG 399
           E YNLLS  + + +  TL ++ T   Q++S FL T+ +D + GI  +L+  A+L  ++G 
Sbjct: 138 ETYNLLSKQYIVHAAQTLNSACTVKQQMASSFLLTMSEDSIDGILDSLERVAVLCHHNGD 197

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +   +R     I GT G S G++P L+  N T++        +G +  YLE WH D+
Sbjct: 198 IGFNVHCIRAKNTPIRGTGGVSNGLVPMLRAYN-TSIPTVCRKNIEGPITVYLEPWHSDI 256

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FL+L+++ GD++ R  DM  A W PD+FM+RV  +A W+L  P E   L D++G EFE
Sbjct: 257 YQFLELKRDIGDEQLRAKDMFYALWTPDIFMRRVFDDADWSLMCPHECPGLIDVWGDEFE 316

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y  YE      E +  +++ A  LW  +  +  +TG P+I +KD CN++S QQ++G +
Sbjct: 317 ALYIRYEE-----ENRYRKQVKARDLWVFITQLQIQTGTPYIVYKDHCNLKSNQQNLGTI 371

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           +  +  TE+   S+S+E A C+L +I  ++  +     +D+ KL   ++     LD +ID
Sbjct: 372 NCGSFSTEVIQYSASDEIAACHLATIAVDMFVNSTTKTYDFSKLKKVVKIVTYNLDKMID 431

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + +E+   S +  RAIG+   G   A  L+  P+ S EA ++  +  E   + A+ A
Sbjct: 432 VNLYPLEEVTFSAYRQRAIGISASGLADAFILMRYPFESKEAKKLNVQIFETFYYGALEA 491

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S E+A E G Y++++GS   +G+   +                T    WD LK ++   G
Sbjct: 492 SCEMAIEDGPYATYEGSPVSKGILQYEMWN----------AKPTDLWDWDTLKAKIAKYG 541

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  +A      +A + G ++S+ P   N+      S  F  V   L+ +L ++ LW 
Sbjct: 542 VRNSLLIAQTSDTFMAQMLGNNESVGPYTSNICTMHASSKLFPYVKKHLLRDLIEKGLWS 601

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M + +  + GSI +I+ IPDDLK ++ TA+E+    + E A+ R  +IDQ+Q LN+++
Sbjct: 602 EDMCNKIISNGGSIQDIDDIPDDLKLLYKTAWEMPQKRIFEMAAARGPFIDQSQCLNVHM 661

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +PS  KL  ++  AW +GLK++ Y
Sbjct: 662 KDPS-DKLTSMHFYAWEIGLKSSMY 685


>gi|15837798|ref|NP_298486.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa 9a5c]
 gi|9106168|gb|AAF84006.1|AE003954_3 ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa 9a5c]
          Length = 830

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 253/765 (33%), Positives = 375/765 (49%), Gaps = 109/765 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 112 DSVNADDLVDLLIREAEARVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++      S    +L+     +  ERD  F Y GL +L  R
Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221

Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354
           Y L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   +
Sbjct: 222 Y-LATDASRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTL N+G  + QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I
Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R 
Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQA 529
           R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++      ++ R+ 
Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKCVKGWYLQDFYDEKRGDPNGSFRRKY 460

Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCT
Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520

Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624
           EI  N +                   + +  VCNL SIN L      Q D    D L   
Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKQAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + SPEA + +D
Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSPEAEQYSD 639

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I++  I AS+ELA+E+G Y+ F GS W  G               E    R    
Sbjct: 640 ALYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684

Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        VV 
Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVA 744

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L       D W         Y  G                  A+++D    I   +RR
Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774

Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817


>gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 583

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 313/581 (53%), Gaps = 44/581 (7%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET--ALI 203
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T  A +
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK--------KPQKATHHEMQCLYPEY 255
            +SR +    P+YA +  R    KL  +V  +  +        +P+K+  +         
Sbjct: 63  IASRVIYH--PDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP---ISSA 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F + +++       H   +D         +   RD+   Y G++ L   Y L I+G   E
Sbjct: 118 FYKVVKK-------HGEFLD-------KVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAE 163

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FMRVA+G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  
Sbjct: 164 LPQYLFMRVAIGIHQNDINA---IAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVA 220

Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           + DD + GIF  L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+T
Sbjct: 221 MKDDSIDGIFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNT 280

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KR GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV
Sbjct: 281 ARYVDQGGGKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRV 340

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N+ WTLFSP+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L   
Sbjct: 341 KENSDWTLFSPNEAVGLSDVYGEEFEKLYCKYESEG------FGTKVSAHKLWLAILHSQ 394

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            ETG P++ +KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +   
Sbjct: 395 TETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKT 454

Query: 614 NQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
            +    FD++KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       
Sbjct: 455 TEDAIGFDFEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAE 514

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           L +P+ S  A  +  +  E I   A+ ASVELA + G Y +
Sbjct: 515 LRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYET 555


>gi|317499962|ref|ZP_07958198.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898679|gb|EFV20714.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 761

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319
           E+G+    + E+    ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ 
Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +A+ LA+ E  K +     EFY++LS      +TPTL N+     QLSSCF+ TVP
Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GIF ++   AM++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVA
Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496
           V+Q G R GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N 
Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361

Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
              W L  P E+       L D +G+E+E  Y +    A   +  V  K     L R ++
Sbjct: 362 DQDWYLMCPHEIMTVKGYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N S                 
Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477

Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 + E  VCNL S++ L +   N   Y +      T VR LDNVID+N + +  AK
Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +NHT+R+IGLG+ G+   L    I + S E +   D+  E I++ AI AS + A+E+G+
Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W+ G +  +  G  ++              W EL+++V   GMRN+  +AIA
Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  IDP                V+N + + E K                
Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668

Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
            GS+  + R+  DL       +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + 
Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS+S
Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750


>gi|153814164|ref|ZP_01966832.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
 gi|145848560|gb|EDK25478.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
          Length = 761

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319
           E+G+    + E+    ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ 
Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +A+ LA+ E  K +     EFY++LS      +TPTL N+     QLSSCF+ TVP
Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GIF ++   AM++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVA
Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496
           V+Q G R GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N 
Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361

Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
              W L  P E+       L D +G+E+E  Y +    A   +  V  K     L R ++
Sbjct: 362 DQDWYLMCPHEIMTVKEYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N S                 
Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477

Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 + E  VCNL S++ L +   N   Y +      T VR LDNVID+N + +  AK
Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +NHT+R+IGLG+ G+   L    I + S E +   D+  E I++ AI AS + A+E+G+
Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W+ G +  +  G  ++              W EL+++V   GMRN+  +AIA
Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  IDP                V+N + + E K                
Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668

Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
            GS+  + R+  DL       +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + 
Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS+S
Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750


>gi|331087815|ref|ZP_08336740.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409510|gb|EGG88951.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 761

 Score =  340 bits (871), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 233/685 (34%), Positives = 350/685 (51%), Gaps = 94/685 (13%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQA 319
           E+G+    + E+    ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ 
Sbjct: 122 EKGLYGSYIMENYSKEEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQE 181

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +A+ LA+ E  K +     EFY++LS      +TPTL N+     QLSSCF+ TVP
Sbjct: 182 MFLGIALHLAMNEKRKIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVP 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GIF ++   AM++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVA
Sbjct: 242 DSLKGIFRSIDNFAMVSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVA 301

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN- 496
           V+Q G R GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N 
Sbjct: 302 VDQLGVRAGAVAVYLDAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENL 361

Query: 497 -AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
              W L  P E+       L D +G+E+E  Y +    A   +  V  K     L R ++
Sbjct: 362 DQDWYLMCPHEIMTVKGYCLEDSFGEEWERRYWDCVHDARIKKRTVLLK----DLIRLII 417

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               ETG P+   +D  N  +P  H G+++ SNLCTEI  N S                 
Sbjct: 418 KSAAETGTPFAFNRDTVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTV 477

Query: 594 ------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 + E  VCNL S++ L +   N   Y +      T VR LDNVID+N + +  AK
Sbjct: 478 VVNTTKAGEFVVCNLASLS-LGNLPVNDPAYVRKVVR--TVVRALDNVIDLNFYPVPYAK 534

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +NHT+R+IGLG+ G+   L    I + S E +   D+  E I++ AI AS + A+E+G+
Sbjct: 535 ITNHTYRSIGLGVSGYHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGS 594

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  F+GS W+ G +  +  G  ++              W EL+++V   GMRN+  +AIA
Sbjct: 595 YRYFEGSDWESGAY-FEKRGYCSD-------------EWKELREKVHRQGMRNAYLLAIA 640

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT++ + I G +  IDP                V+N + + E K                
Sbjct: 641 PTSSTSIIAGTTAGIDP----------------VMNKYFLEEKK---------------- 668

Query: 828 DGSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
            GS+  + R+  DL       +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + 
Sbjct: 669 -GSM--LPRVAPDLSPETYWYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTM 725

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS+S
Sbjct: 726 RQVLNLYLKAWECGVKTVYYVRSKS 750


>gi|166710316|ref|ZP_02241523.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 832

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 73  IPFEPERLERAIDQVHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 241 IALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +
Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV       L D Y ++   A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 421 RGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L       D W      
Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|325919222|ref|ZP_08181269.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325923020|ref|ZP_08184720.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325546490|gb|EGD17644.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325550296|gb|EGD21103.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 833

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 255/805 (31%), Positives = 393/805 (48%), Gaps = 112/805 (13%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        + +  D ++  DL   LI  +   ++ 
Sbjct: 74  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVDRKDSVNADDLVDHLIREAEARVDL 133

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 134 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 183

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRV 324
             +L     D +L+     +  ERD  F Y GL +L  RY    N   + E+PQ  ++ +
Sbjct: 184 NDILRRYSKD-ELIEAGKMIAPERDTLFAYNGLYLLATRYLATDNSRGVFELPQERWLTI 242

Query: 325 AMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV
Sbjct: 243 ALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV 302

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TAV
Sbjct: 303 DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAV 362

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           +V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V + 
Sbjct: 363 SVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERR 422

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRK 548
             W LF P EV       L D Y ++   A  ++ R+ +    + ++ RK + A+ ++++
Sbjct: 423 GDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFKR 482

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------- 593
           ++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S               
Sbjct: 483 IMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIV 542

Query: 594 ----SEETAVCNLGSINLLAHF--ANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIE 644
               + +  VCNL SINL       ++Q D    D L   I   VR+LDNVID+N   + 
Sbjct: 543 TTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGADVLERLIPIQVRMLDNVIDLNQLPVP 602

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  + AS+ELA+E
Sbjct: 603 QATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTVQASMELAKE 662

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNC 763
           +G YS F+GS W  G               E    R    P W EL  +V   G+RN+  
Sbjct: 663 KGTYSVFRGSDWHTG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAWM 707

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+AP  + A I G + SIDP Y   Y +                  +++D         
Sbjct: 708 LAVAPNMSTAQIAGSTASIDPIYSAFYYE------------------EKKDFRRPVAAPG 749

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-- 881
           L        ++E  P         A+++D    +   +RRQ+ IDQ+ S N Y+  PS  
Sbjct: 750 L--------SLETWP----YYEKGAYKVDQFASVRQNARRQRHIDQSISFNFYV--PSTI 795

Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRS 905
               L  ++  AW  GLKTTYY+RS
Sbjct: 796 RASTLLDLHMTAWREGLKTTYYVRS 820


>gi|167748342|ref|ZP_02420469.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
 gi|167652334|gb|EDR96463.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
          Length = 763

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 224/663 (33%), Positives = 339/663 (51%), Gaps = 99/663 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-F 342
           ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +AM LA+KETE   + V+ F
Sbjct: 149 IRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGIAMHLAMKETEDRNQWVKRF 208

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G 
Sbjct: 209 YDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGL 268

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EF
Sbjct: 269 YFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQGAVAVYLDVWHRDLPEF 328

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYG 515
           L LR N GD+R + HD+  A   PD F ++   N    W L  P E+       L D YG
Sbjct: 329 LSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGSWYLMCPHEILTVKGYALEDCYG 388

Query: 516 KEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            E+   Y +    ER + R        I    + R ++    ETG P+   +D  N  +P
Sbjct: 389 TEWTEKYLDCVLDERISKR-------VIPIKDIVRMIIKSAAETGTPFTFNRDHVNRANP 441

Query: 573 QQHVGVVHSSNLCTEITLNSSS-------------EETAV----------CNLGSINLLA 609
            +H G+++ SNLCTEI  N S+             EE  V          CNL S++L  
Sbjct: 442 NRHKGIIYCSNLCTEIAQNMSASGQIEQKIEMIGGEEVVVTVTKPGDFVVCNLASLSLGN 501

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  DY++L+    +AVR LDNVID+N   +  A+ ++  +R +GLG+ G+   L  
Sbjct: 502 LCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRYRPVGLGVSGYHHMLAK 558

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             I + S E ++ A++    I + A++AS ++++E+G+Y  F GS W  G          
Sbjct: 559 HKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPGSDWQTG---------- 608

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               D       ++  W  L+ R+K  G+RN   +A APT++ + I G +  +DP     
Sbjct: 609 ----DYFRKRDLTKGRWKALEDRIKKHGLRNGYLLAAAPTSSTSIIAGTTAGLDP----- 659

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IH 845
                      V+N + + E K                    G I R+  +L       +
Sbjct: 660 -----------VMNRYFLEEKK-------------------YGLIPRVAPELSMETFWYY 689

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A  ID  W +++   RQ+ IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY R
Sbjct: 690 KNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEQGVKTIYYTR 749

Query: 905 SRS 907
           S+S
Sbjct: 750 SKS 752


>gi|84622096|ref|YP_449468.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|161899022|ref|YP_199113.2| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84366036|dbj|BAE67194.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 832

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 73  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +
Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV       L D Y ++   A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 421 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L       D W      
Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|325914791|ref|ZP_08177128.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538984|gb|EGD10643.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 833

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 248/767 (32%), Positives = 379/767 (49%), Gaps = 110/767 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 112 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 163

Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             Y  +    ++E +  R      +L     D +L+     ++ ERD  F Y GL +L  
Sbjct: 164 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 220

Query: 304 RYFLHINGSRI-EMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCS 354
           RY    N   + E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   +
Sbjct: 221 RYLATDNSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVA 280

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I
Sbjct: 281 TPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAI 340

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R 
Sbjct: 341 RGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRL 400

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529
           R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++   A  ++ R+ 
Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRKY 460

Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCT
Sbjct: 461 EEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCT 520

Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHF--ANNQFDY---DKLA 622
           EI  N S                   + +  VCNL SINL       ++Q D    D L 
Sbjct: 521 EILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGADVLE 580

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + 
Sbjct: 581 RLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDY 640

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           +DE  E I++  I AS+ELA+E+G YS F+GS W  G               E    R  
Sbjct: 641 SDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARDY 685

Query: 743 RLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +         
Sbjct: 686 NSPQWLELSAQVSVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYE--------- 736

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                    +++D         L        ++E  P         A+++D    +   +
Sbjct: 737 ---------EKKDFRRPVAAPGL--------SLETWP----YYEKGAYKVDQFASVRQNA 775

Query: 862 RRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           RRQ+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 776 RRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 820


>gi|58424691|gb|AAW73728.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 839

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 259/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 80  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 139

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 140 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 189

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 190 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 247

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 248 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 307

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 308 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 367

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +
Sbjct: 368 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 427

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV       L D Y ++   A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 428 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 487

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 488 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 547

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 548 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 607

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 608 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 667

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 668 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 712

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L       D W      
Sbjct: 713 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 762

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 763 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 800

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 801 IRASTLLDLHMTAWREGLKTTYYVRS 826


>gi|28198392|ref|NP_778706.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa Temecula1]
 gi|182681035|ref|YP_001829195.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M23]
 gi|28056462|gb|AAO28355.1| ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa Temecula1]
 gi|182631145|gb|ACB91921.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylella
           fastidiosa M23]
 gi|307579503|gb|ADN63472.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 830

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 252/765 (32%), Positives = 375/765 (49%), Gaps = 109/765 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  + + ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 112 DSVNADDLVDLLIREAESRVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++      S    +L+     +  ERD  F Y GL +L  R
Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221

Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354
           Y L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   +
Sbjct: 222 Y-LATDTSRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTL N+G  + QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I
Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R 
Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529
           R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++      ++ R+ 
Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKY 460

Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCT
Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520

Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624
           EI  N +                   + +  VCNL SIN L      Q D    D L   
Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + S EA + +D
Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSD 639

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I++  I AS+ELA+E+G Y+ F GS W  G               E    R    
Sbjct: 640 ALYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684

Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        VV 
Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVA 744

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L       D W         Y  G                  A+++D    I   +RR
Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774

Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817


>gi|289664734|ref|ZP_06486315.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670857|ref|ZP_06491932.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 827

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 250/768 (32%), Positives = 380/768 (49%), Gaps = 112/768 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 106 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 157

Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             Y  +    ++E +  R      +L     D +L+     ++ ERD  F Y GL +L  
Sbjct: 158 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 214

Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353
           RY L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   
Sbjct: 215 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 273

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ 
Sbjct: 274 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 333

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R
Sbjct: 334 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 393

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQ 528
            R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++   A  ++ R+
Sbjct: 394 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRRK 453

Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLC
Sbjct: 454 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 513

Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621
           TEI  N S                   + +  VCNL SINL        +Q D    D L
Sbjct: 514 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 573

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA +
Sbjct: 574 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAED 633

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +DE  E I++  I AS+ELA+E+G YS F+GS W  G               E    R 
Sbjct: 634 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 678

Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        
Sbjct: 679 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYE-------- 730

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                     +++D         L        ++E  P         A+++D    +   
Sbjct: 731 ----------EKKDFRRPVAAPGL--------SLETWP----YYEKGAYKVDQFASVRQN 768

Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           +RRQ+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 769 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 814


>gi|253582917|ref|ZP_04860135.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
 gi|251835123|gb|EES63666.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
          Length = 748

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 240/770 (31%), Positives = 370/770 (48%), Gaps = 99/770 (12%)

Query: 169 ACSGLQDVSSKIVLSETY-KNMY-DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLL 225
           AC GL+     +V  E+Y  ++Y + ++   ++ +LI  +  +   +E ++  V  R L+
Sbjct: 26  ACEGLE---VNMVELESYIDSIYQENITTKKIQESLINQAVAMTSFEESDWTYVAGRLLM 82

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIEEGVKARLLHESMMDFDLVYLA 282
            +  REV             H+    Y E++       E G+    L E   D ++  L 
Sbjct: 83  METEREVF------------HKRGFSYGEFYKTIKTLTENGIYDNRLQEYTED-EIKELE 129

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             +   RD  ++Y G  +  +RY L   G+  E+PQ  FM +AM LA+ E  +   A  F
Sbjct: 130 KAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVFMCIAMLLAINEENRVLVAKRF 189

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           YN LS      +TP L N       LSSCF+T + D++  IF  +   A ++K  GG+G 
Sbjct: 190 YNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFYNIDTIAKISKSGGGVGL 249

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R   + ++G    S GV+P++K+ NDTAVAVNQ G+R GAV   L++WH+D+E F
Sbjct: 250 NVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRAGAVTVALDSWHLDIELF 309

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE 517
           L+L+   GD R + +D+     + DLFMKRV  N  WTL  P EV      +L +LYG++
Sbjct: 310 LELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTLVDPYEVRIKYGVELCELYGEK 369

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  Y+  E+      +K+ + I A  L+++++ +  ETG P+I FKD  N+ +   H G
Sbjct: 370 FEEIYKALEKDTS---LKLKKVIKARELFKEIMKVQIETGMPYIFFKDRANLMNHNNHKG 426

Query: 578 VVHSSNLCTEITLN---------SSSEETAV----------CNLGSINLLAHFANNQFDY 618
           ++ + NLC E   N            EE  V          CNL S+N LA  A      
Sbjct: 427 MIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEVHTCNLVSLN-LAEIAR----- 480

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L + + TAVR+LDN ID+    I ++ K N  +R IG+G MG    L    + Y   E
Sbjct: 481 EELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIGVGTMGLADYLAREFMIY--DE 538

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           ++   DE  E I+ ++I +S  LA+ RG Y  FKGS+WD+GVF         + +D    
Sbjct: 539 SLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWDRGVF-------FQKNKDWYIK 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           N      W+E+ + V   GMRN    AIAP  + + + G + S++P++   Y++ N  G 
Sbjct: 592 NSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMGATASVNPTFSRFYIEKNQKGA 651

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V    V  LK R  W                            +     ++P   +E
Sbjct: 652 VPRV----VKYLKDR-AW---------------------------FYPEFKNVNPQIYVE 679

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRS 905
             SR  KW  Q  S+ L  D     +   IY     AW  G K+ YY+R+
Sbjct: 680 IMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWKNGCKSIYYIRT 729


>gi|78049717|ref|YP_365892.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325927515|ref|ZP_08188753.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
 gi|78038147|emb|CAJ25892.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542108|gb|EGD13612.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
          Length = 832

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 252/768 (32%), Positives = 377/768 (49%), Gaps = 112/768 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 162

Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             Y  +    ++E +  R      +L     D +L+     ++ ERD  F Y GL +L  
Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 219

Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353
           RY L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   
Sbjct: 220 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 278

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ 
Sbjct: 279 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 338

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R
Sbjct: 339 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 398

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQ 528
            R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++   A  ++ R+
Sbjct: 399 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFRRK 458

Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLC
Sbjct: 459 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 518

Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621
           TEI  N S                   + +  VCNL SINL        +Q D    D L
Sbjct: 519 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 578

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA +
Sbjct: 579 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAED 638

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +DE  E I++  I AS+ELA+E+G YS F+GS W  G               E    R 
Sbjct: 639 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 683

Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        
Sbjct: 684 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRP 743

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           V    L  E      W         Y  G                  A+++D    +   
Sbjct: 744 VAAPGLSLE-----TWP-------YYEKG------------------AYKVDQFASVRQN 773

Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           +RRQ+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 774 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|188578921|ref|YP_001915850.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523373|gb|ACD61318.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 832

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 258/806 (32%), Positives = 390/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 73  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+  +  IPDLFM+ V +
Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFISVCIPDLFMEAVER 420

Query: 496 NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV       L D Y ++   A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 421 RGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFRRKYEEVVADERITRKTVKAIEIFK 480

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSDELYERINYLTIQASMELAK 660

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L       D W      
Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGL-----SLDTWP----- 755

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|225568011|ref|ZP_03777036.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
 gi|225163185|gb|EEG75804.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
          Length = 741

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 243/751 (32%), Positives = 368/751 (49%), Gaps = 96/751 (12%)

Query: 192 GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           GL++ +  + L  ++  L  +E P +  + AR L    R  +   +  +  ++ + ++  
Sbjct: 41  GLTDKEQLSLLTKAAVELTTQEAPGWEMIAARLLYAGFRDSLEDAMKSRGIRSFYEKIVY 100

Query: 251 LYPE-YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           L  E  +  YI E       H S  + +    A  ++ +R   F Y GL +L +RY +  
Sbjct: 101 LTKENLYGSYILE-------HYSRQEIEA--FAKLIEEDRSRLFTYSGLDLLLNRYVIRT 151

Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
             G  +E PQ  FM ++M LA+KE E     V+ FY +LS      +TPTL N+   + Q
Sbjct: 152 RKGVILETPQEMFMGISMHLAMKEKENRSEWVKRFYGMLSLLKVTMATPTLSNARKPYHQ 211

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+ TVPD L GI+ ++   A ++KY GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 212 LSSCFIDTVPDSLDGIYRSIDSFAKVSKYGGGMGMYFGKVRAGGSAIRGFEGAAGGVIRW 271

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD
Sbjct: 272 IKLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLKLRTNNGDDRMKAHDVFPAVCYPD 331

Query: 488 LF--MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            F  M R      W L  P EV       L D YGKE+E  Y   +  AD    K  R +
Sbjct: 332 YFWKMARDHIEGDWYLMCPHEVLTVKGYALEDCYGKEWEEKY--LDCVADERISK--RVL 387

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--------- 591
               + R ++    ETG P++  +D  N  +P  H G+++ SNLCTEI  N         
Sbjct: 388 PIKEIIRLIIRSAVETGTPFVFNRDEVNRMNPNGHKGIIYCSNLCTEIAQNMGAVEEVRQ 447

Query: 592 --------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                         +   E  VCNL S++L  H   +  D  ++  T+ +A+R LDNVID
Sbjct: 448 SIETVDGETVVVTVTKPGEFVVCNLASVSL-GHI--DVSDEKEIYRTVSSAMRALDNVID 504

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +  AK +N  +R +GLG+ G+   L    I + S E +  AD+  + +   AI+A
Sbjct: 505 LNFFPVPYAKLNNEKYRPVGLGVSGYHHMLAKHGIQWESEEHLAFADKVFDTLHRAAIAA 564

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ++A+E+G Y+ F+GS W  G +                  + +   W++L+ R  + G
Sbjct: 565 SCDIAEEKGVYACFEGSDWQTGAY--------------FDKRKLTGAAWEQLRARAASCG 610

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN   +A APT++ + I G +  +DP     Y++   +G    V      EL     W 
Sbjct: 611 VRNGYMLAAAPTSSTSIIAGTTAGLDPVMHRFYLEEKKNGLVPRV----APELSMDTFW- 665

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W + +   RQ+ IDQAQS+NLY+
Sbjct: 666 --------------------------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYI 699

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +E + + +  +Y  AW  G+KT YY+RSRS
Sbjct: 700 TNEYTFRNVLDLYLLAWECGVKTVYYIRSRS 730


>gi|294625676|ref|ZP_06704298.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600045|gb|EFF44160.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 832

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 258/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 73  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 132

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 133 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 182

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 183 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 240

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 241 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 300

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 301 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 360

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +
Sbjct: 361 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 420

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV  +   Y ++F       A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 421 RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK 480

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 481 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 540

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 541 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 600

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 601 PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK 660

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 661 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 705

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L  E      W      
Sbjct: 706 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP----- 755

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 756 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 793

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 794 IRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|71276517|ref|ZP_00652792.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900742|ref|ZP_00682864.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729740|ref|YP_001775173.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M12]
 gi|71162694|gb|EAO12421.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729512|gb|EAO31621.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964533|gb|ACA11543.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 830

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 251/765 (32%), Positives = 373/765 (48%), Gaps = 109/765 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 112 DSVNADDLVDLLIREAEARVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++      S    +L+     +  ERD  F Y GL +L  R
Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221

Query: 305 YFLHINGSR--IEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCS 354
           Y L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   +
Sbjct: 222 Y-LATDASRGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVA 280

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTL N+G  + QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I
Sbjct: 281 TPTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMI 340

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R 
Sbjct: 341 RGVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRL 400

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQA 529
           R HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++      ++ R+ 
Sbjct: 401 RAHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKY 460

Query: 530 DR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCT
Sbjct: 461 EDVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCT 520

Query: 587 EITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLAST 624
           EI  N +                   + +  VCNL SIN L      Q D    D L   
Sbjct: 521 EILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERL 579

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + S EA + +D
Sbjct: 580 IPIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSD 639

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I++  I AS+ELA+E+G Y+ F GS W  G               E    R    
Sbjct: 640 VLYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNS 684

Query: 745 P-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V  
Sbjct: 685 PQWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPVYSAFYYEEKKDYRRPVAA 744

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L       D W         Y  G                  A+++D    I   +RR
Sbjct: 745 PGL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARR 774

Query: 864 QKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 775 QRHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817


>gi|73988081|ref|XP_862175.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           3 [Canis familiaris]
          Length = 491

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 289/488 (59%), Gaps = 31/488 (6%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLV-- 279
            +  L +E         +K     M+ LY      YI    G  + ++ +S +D  L   
Sbjct: 82  AVSNLHKET--------KKVFSDVMEDLY-----NYINPHNGRHSPMVAKSTLDIVLANK 128

Query: 280 -YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    
Sbjct: 129 DRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHEEDIDA--- 185

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYS 397
           A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +
Sbjct: 186 AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSA 245

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWH 456
           GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE WH
Sbjct: 246 GGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWH 305

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+
Sbjct: 306 LDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGE 365

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++
Sbjct: 366 EFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKI 480

Query: 636 IDINCHTI 643
           IDIN + +
Sbjct: 481 IDINYYPV 488


>gi|294664799|ref|ZP_06730123.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605430|gb|EFF48757.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 836

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 258/806 (32%), Positives = 391/806 (48%), Gaps = 114/806 (14%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
           I F  +RLE  +++  +     DV+        +    D ++  DL   LI  +   ++ 
Sbjct: 77  IPFEPERLERAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDL 136

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR---- 267
             P +    AR  L +L        YK+  +   ++    Y  +    ++E +  R    
Sbjct: 137 TTPEWEHFAARLYLRRL--------YKRASRNRFYDASQKYGSFVG--LQESLADRNVYS 186

Query: 268 --LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             +L     D +L+     ++ ERD  F Y GL +L  RY L  + SR   E+PQ  ++ 
Sbjct: 187 NDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLATRY-LATDSSRGVFELPQERWLT 244

Query: 324 VAMGLALKET-----EKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +A+ L   E       +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 245 IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 304

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  G+ I G +  S GV+P++K  N+TA
Sbjct: 305 VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA 364

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +
Sbjct: 365 VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER 424

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADR--GEIKVFRK-ISAVALWR 547
              W LF P EV  +   Y ++F       A  ++ R+ +    + ++ RK + A+ +++
Sbjct: 425 RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK 484

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S              
Sbjct: 485 RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI 544

Query: 594 -----SEETAVCNLGSINL--LAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTI 643
                + +  VCNL SINL        +Q D    D L   I   VR+LDNVID+N   +
Sbjct: 545 VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV 604

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G+   L    I + + EA + +DE  E I++  I AS+ELA+
Sbjct: 605 PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK 664

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSN 762
           E+G YS F+GS W  G               E    R    P W EL  +V   G+RN+ 
Sbjct: 665 EKGTYSVFRGSDWHNG---------------EYFRARDYNSPQWLELSAQVAVNGVRNAW 709

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+AP  + A I G + SIDP Y   Y +        V    L  E      W      
Sbjct: 710 MLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLE-----TWP----- 759

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
              Y  G                  A+++D    +   +RRQ+ +DQ+ S N Y+  PS 
Sbjct: 760 --YYEKG------------------AYKVDQFASVRQNARRQRHVDQSISFNFYV--PST 797

Query: 882 --GKKLDFIYRQAWLMGLKTTYYLRS 905
                L  ++  AW  GLKTTYY+RS
Sbjct: 798 IRASTLLDLHMTAWREGLKTTYYVRS 823


>gi|266623613|ref|ZP_06116548.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864590|gb|EFC96888.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
          Length = 640

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 225/656 (34%), Positives = 332/656 (50%), Gaps = 93/656 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLA-LKETEKEKRAVEFYNLL 346
           RD  F Y GL++L  RY +    +  +E PQ  F+ +A+ LA L++ ++ +    FY++L
Sbjct: 30  RDQLFTYSGLELLLSRYVIRSRENVPLESPQEMFLGIALHLAMLEKNDRLEWVRRFYDML 89

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+     +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  
Sbjct: 90  STLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGLYFGK 149

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR
Sbjct: 150 VRAAGSAIRGFKGAAGGVIRWIKLANDTAVAVDQLGVRQGAVAVYLDAWHKDLPEFLALR 209

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFE 519
            N GDDR + HD+  A   P+LF K   ++  A W L  P E+       L D YG+E+E
Sbjct: 210 TNNGDDRMKAHDVFPAVCYPNLFWKLAKEDIDADWYLMCPHEILTVKGYSLEDSYGREWE 269

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y  +E  AD    K  R I    L R +L    ETG P+   +D  N  +P  H G++
Sbjct: 270 ERY--WECVADHRIHK--RVIPVKELVRLILKSAVETGTPFTFNRDLVNEANPNSHKGII 325

Query: 580 HSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFANNQF 616
           + SNLCTEI  N S  E                         VCNL S++L      N+ 
Sbjct: 326 YCSNLCTEIAQNMSPVEQVEQRIETVDGETVVVTVTKPGDFVVCNLASLSLGKIDVTNRE 385

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +  +L    + AVR LDNVID+N   +  A+ +N  +R IGLG+ G+   L    I + S
Sbjct: 386 EVTRLT---QYAVRALDNVIDLNFFPVPYARINNMKYRPIGLGVSGYHHMLAKNGISWES 442

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E +   D   E+I++ AI AS + A+E+G Y  F+GS W  G +               
Sbjct: 443 EEHLAFTDRVFEWINYAAIEASCDNAREKGCYELFEGSDWQTGAY--------------F 488

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
              +     W  LK++    GMRN   +AIAPT++ + + G +  +DP            
Sbjct: 489 EKRKYHSEEWLRLKEKTAANGMRNGWLIAIAPTSSTSMLAGTTAGLDP------------ 536

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK----IHATAFEID 852
               ++N + + E K                    G + R+  DL       +  A  ID
Sbjct: 537 ----IMNRYYLEEKKN-------------------GLVPRVAPDLSPETFWQYKNAHYID 573

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             W + +   RQ+ +DQAQS+NLY+ +E + +++  +Y  AW  G+KT YY+RSRS
Sbjct: 574 QQWSVRAGGIRQRHVDQAQSMNLYITNEYTLRQVLNLYILAWECGVKTIYYIRSRS 629


>gi|21244792|ref|NP_644374.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21110490|gb|AAM38910.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 832

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 251/768 (32%), Positives = 377/768 (49%), Gaps = 112/768 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  +   ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 111 DSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRL--------YKRASRNRFYDAS 162

Query: 250 CLYPEYFCRYIEEGVKAR------LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             Y  +    ++E +  R      +L     D +L+     ++ ERD  F Y GL +L  
Sbjct: 163 QKYGSFVG--LQESLADRNVYSNDILRRYSKD-ELIEAGKMIEPERDKLFAYNGLYLLAT 219

Query: 304 RYFLHINGSR--IEMPQAFFMRVAMGLALKET-----EKEKR---AVEFYNLLSSFHFMC 353
           RY L  + SR   E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   
Sbjct: 220 RY-LATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTV 278

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ 
Sbjct: 279 ATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 338

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R
Sbjct: 339 IRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQR 398

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQ 528
            R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F       A  ++ R+
Sbjct: 399 LRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRK 458

Query: 529 ADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +    + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLC
Sbjct: 459 YEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLC 518

Query: 586 TEITLNSS-------------------SEETAVCNLGSINL--LAHFANNQFDY---DKL 621
           TEI  N S                   + +  VCNL SINL        +Q D    D L
Sbjct: 519 TEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVL 578

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA +
Sbjct: 579 ERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAED 638

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +DE  E I++  I AS+ELA+E+G YS F+GS W  G               E    R 
Sbjct: 639 YSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG---------------EYFRARD 683

Query: 742 SRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              P W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        
Sbjct: 684 YNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRP 743

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           V    L  E      W         Y  G                  A+++D    +   
Sbjct: 744 VAAPGLSLE-----TWP-------YYEKG------------------AYKVDQFASVRQN 773

Query: 861 SRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           +RRQ+ +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 774 ARRQRHVDQSISFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 819


>gi|71901121|ref|ZP_00683228.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|71729126|gb|EAO31250.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
          Length = 830

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 249/764 (32%), Positives = 372/764 (48%), Gaps = 107/764 (14%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           D ++  DL   LI  + + ++   P +    AR  L +L        YK+  +   ++  
Sbjct: 112 DSVNADDLVDLLIREAESRVDLTAPEWEYFAARLYLRRL--------YKRASRNRFYDAS 163

Query: 250 CLYPEYFCRYIEEGVKARLLH-----ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             Y  +    ++E +  R ++      S    +L+     +  ERD  F Y GL +L  R
Sbjct: 164 QKYGSFVG--LQESLADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATR 221

Query: 305 YF-LHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKR---AVEFYNLLSSFHFMCST 355
           Y     +    E+PQ  ++ +A+ L   E       +E+R     E Y  LS+ +   +T
Sbjct: 222 YLATDASCGVFELPQERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVAT 281

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+G  + QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I 
Sbjct: 282 PTLGNAGKINGQLSSCFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIR 341

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G    S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R
Sbjct: 342 GVANSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLR 401

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD 530
            HD+ T+  IPDLFM+ V +   W LF P EV       L D Y ++      ++ R+ +
Sbjct: 402 AHDVFTSVCIPDLFMEAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYE 461

Query: 531 R--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
               + ++ RK + A+ ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCTE
Sbjct: 462 DVVADERISRKTVKAIDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTE 521

Query: 588 ITLNSS-------------------SEETAVCNLGSINLLAHFANNQFDY---DKLASTI 625
           I  N +                   + +  VCNL SIN L      Q D    D L   I
Sbjct: 522 ILQNMTPTRLIQEMISGNQIVTTKHAGDFVVCNLSSIN-LGRAITVQADLLGADVLERLI 580

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + S EA + +D 
Sbjct: 581 PIQVRMLDNVIDLNLLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDA 640

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I++  I AS+ELA+E+G Y+ F GS W  G               E    R    P
Sbjct: 641 LYERINYLTIRASMELAKEKGTYAVFPGSDWQTG---------------EYFRARDYNSP 685

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        VV  
Sbjct: 686 QWLELAAQVAVNGVRNAYMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP 745

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L       D W         Y  G                  A+++D    I   +RRQ
Sbjct: 746 GL-----SLDTWP-------YYEKG------------------AYKLDQFASIRQNARRQ 775

Query: 865 KWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ+ S N Y+  PS      L  ++  AW  GLKTTYY+RS
Sbjct: 776 RHVDQSLSFNFYV--PSTIRASTLLDLHMTAWREGLKTTYYVRS 817


>gi|212638242|ref|YP_002314762.1| ribonucleotide-diphosphate reductase subunit alpha [Anoxybacillus
           flavithermus WK1]
 gi|212559722|gb|ACJ32777.1| Ribonucleotide reductase, alpha subunit [Anoxybacillus flavithermus
           WK1]
          Length = 758

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 249/778 (32%), Positives = 380/778 (48%), Gaps = 100/778 (12%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREV-L 233
           +SS+  +  T +++    S  D+   LI ++   I  E P++  V AR  L++L  E  +
Sbjct: 28  LSSERYIERTIRSLTYTKSHDDMMNKLILNALDEITVEQPDWTFVAARLYLQQLYNEAAI 87

Query: 234 TTVYKKPQKATH-HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
              Y       + +E+Q +        +  G+    + E     +L      +  ++D  
Sbjct: 88  NRGYDVSDTYRYFYELQTML-------VNLGIYDPFVLERYTKEELQEAGTWIDPKKDEQ 140

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSS 348
           F Y+GL+ L DRY     +G   E+PQ  F+ +A+ L + E+ KEKR     E Y  LS+
Sbjct: 141 FTYIGLKTLVDRYLAKGYDGEIYELPQERFLTIALTLMVNES-KEKRMELVKEAYWALSN 199

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +   +TPT  N+G  + QLSSCF+ TV D L GI+ +  + A L+K  GG+G     +R
Sbjct: 200 QYMTVATPTYANAGKSYGQLSSCFIDTVDDSLIGIYESNTDVARLSKGGGGIGVYLGKIR 259

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
              + I G  G S GVIP+++  N+TAV+V+Q G R+G++  YL+ WH D+  FLD + N
Sbjct: 260 ARNSDIKGFKGVSSGVIPWMRQLNNTAVSVDQLGTRQGSIAVYLDVWHKDIFSFLDAKLN 319

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-------------LHDLYG 515
            GD+R++ HD+     IPDLFM++V +   W LF P EV               L D Y 
Sbjct: 320 NGDERQKCHDLFYGVCIPDLFMEQVEKRGDWYLFDPHEVKKVMGWKDTDGNPLGLEDFYD 379

Query: 516 KEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +E       E YE   +  E+   R + A+ + +++L    ETG P++ ++D  N  +P 
Sbjct: 380 EERGRGSFREKYEECINHPELSKER-VPAIEIMKRILKSQLETGTPYMFYRDEANRMNPN 438

Query: 574 QHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANN 614
           +H G+++SSNLCTEI  N S                     +  VCNL SI+L     + 
Sbjct: 439 KHAGMIYSSNLCTEIMQNMSPTTVTKEYTQDGEIIIHKKPGDFVVCNLSSIHLARAVQD- 497

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D L   I   VR+LDNVID+N + IE  +A  +N  +RAIGLG   +   L L  I
Sbjct: 498 ----DVLERLIPIQVRMLDNVIDLNENRIEVLQAVMTNKKYRAIGLGAFSWHHLLALKGI 553

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + S E+V+ AD+  E I++  I AS+ELA+E+GAY +F GS W  G +           
Sbjct: 554 KWNSEESVDFADKLFEKIAYLTIRASMELAKEKGAYPAFAGSDWHTGKY----------- 602

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            D    +    L WDELK++V   G+RN   MA AP A+ + +   + S DP +  LY +
Sbjct: 603 FDLRGYHSHDELDWDELKQQVMRHGIRNGYLMAPAPNASTSVLANGTASCDPVFNRLYFE 662

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
              +    V     V +L  +  W                            +  A+E+D
Sbjct: 663 EKKNYKIPVT----VPDLNAKTFW---------------------------FYENAYEVD 691

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
               I   + RQK +DQ+ S NLY+ +    K L  ++  AW   LK+TYY+RS + T
Sbjct: 692 QKMSIRQNAARQKHVDQSLSFNLYVYNTIKAKDLLDLHLTAWKERLKSTYYVRSTAVT 749


>gi|170077964|ref|YP_001734602.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885633|gb|ACA99346.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
          Length = 780

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 242/803 (30%), Positives = 382/803 (47%), Gaps = 96/803 (11%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN- 188
           A  S S++  P  P+  ++   G     +  R+  +V+ AC  L+  ++ I L    K  
Sbjct: 29  ATYSASRAVTPTKPQTYVIKRSGKRAPLDVTRIRNVVQWACQDLE--ANTIELEAGLKTR 86

Query: 189 MYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHH 246
           + DG++  +++  LI  +  +   +EP++  V  R  +  L ++ L    Y+  Q     
Sbjct: 87  LKDGVTTREIQENLIQCALEMCSPEEPDWRYVAGRLHIWSLWKDTLVARGYQYGQ----- 141

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--AND-LKYERDFAFEYLGLQILYD 303
                YP+     + + V A+   E ++ +    L  AN  +  + D  ++Y G  +L  
Sbjct: 142 -----YPQL----VADKVAAKAYDERLLQYSAAELEIANGWINPDWDMDYDYAGAVLLTK 192

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNS 361
           RY L       E+PQ  F+  A+ LAL E  +   K A +FY  ++      +TP L N 
Sbjct: 193 RYLLDD-----ELPQEAFLTCALLLALPEKPENRLKWAKKFYEAIAQRQISLATPILANL 247

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
              +  LSSCF+  + D+L  IF  +   A ++K  GG+G + + +R  G+ + G    S
Sbjct: 248 RIPNGSLSSCFIIGMEDNLESIFREITNAARISKNGGGVGCNVSRIRATGSRVMGKANAS 307

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GVIP++K+ NDTA+AVNQGG+R GA+   L+ WH+DV EFL+++   GD RR+ +D+  
Sbjct: 308 GGVIPWIKLLNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENGDQRRKAYDVFP 367

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKV 536
              + D FM+RV     WTL  P EV      DL  L+G++F+ AY   E   D+ +IK+
Sbjct: 368 QLVVTDEFMRRVQHKEAWTLVDPYEVKENLGIDLAALWGEKFDAAYRQIEASLDQ-DIKL 426

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           ++K+ A  L+++++    ETG P+I FKD  N  +P QH G +   NLC E   N    +
Sbjct: 427 YKKVDARHLFKEIMRSQIETGMPYIAFKDTINRANPNQHEGYIPGVNLCVESFSNVVPGQ 486

Query: 597 TA-VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            A  CNL S+NL    AN   + D+LA     AVR+LDN I+I     E +   N  +R 
Sbjct: 487 LAHTCNLDSLNL----AN--IEADELADACEVAVRILDNTIEITNTPFEDSSIHNQRYRT 540

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G MG    L    + Y + EA+   D   E I ++    SV LAQERGAY  F GS 
Sbjct: 541 IGVGAMGLADWLAKNKLSYKNIEAI---DRLFEDIGYYCTRTSVNLAQERGAYPGFPGSE 597

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G   I +  +     +  A++R     W+ L + V+  G+RNS+  AIAP  + + +
Sbjct: 598 WSKGHL-IGAKPITWYRENAHAVDR-----WERLSEDVRKYGIRNSHITAIAPNTSSSLV 651

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S SI P+Y   +      G   +   F+      +  W                   
Sbjct: 652 QGCSASILPTYSKFFYDKWAKGTVPIAPPFI-----GKSFW------------------- 687

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SG 882
                    +     +D   ++++ +  QKWID   S+ L         + +EP      
Sbjct: 688 --------FYQENKSMDQRLVVKAVATMQKWIDTGISMELIFNLNQGIYFPNEPERALKA 739

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           K +  I   AW  G K  YY+R+
Sbjct: 740 KDIFEILMLAWAEGCKAIYYIRT 762


>gi|197247241|gb|AAI65359.1| Rrm1 protein [Danio rerio]
          Length = 509

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 285/501 (56%), Gaps = 37/501 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T     + TL  K P+YA + AR 
Sbjct: 33  IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 92

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L +E         +K     M+ LY      Y+   + +R  H  M+     D+V 
Sbjct: 93  AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 136

Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
              D     + Y+RDF++ + G + L   Y L ING   E PQ   MRV++G+     E 
Sbjct: 137 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 193

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++
Sbjct: 194 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 253

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 254 KSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLE 313

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P++   L + 
Sbjct: 314 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 373

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  Y  YE++      +  R + A  LW  ++    ETG P++ +KD CN +S Q
Sbjct: 374 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQ 428

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
           Q++G +  SNLCTEI   +S++E AVCNL SI L  +  + + FD+ KLAS  +  V+ L
Sbjct: 429 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 488

Query: 633 DNVIDINCHTIEKAKKSNHTH 653
           + +IDIN + ++   +S   H
Sbjct: 489 NKIIDINYYPVKDGCRSRSLH 509


>gi|27882097|gb|AAH44356.1| Rrm1 protein [Danio rerio]
          Length = 498

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 285/501 (56%), Gaps = 37/501 (7%)

Query: 166 VEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +++ C GL    V    +  +  + +Y G++  +L+T     + TL  K P+YA + AR 
Sbjct: 22  IQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAEIAATLTTKHPDYAILAARI 81

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD---FDLVY 280
            +  L +E         +K     M+ LY      Y+   + +R  H  M+     D+V 
Sbjct: 82  AVSNLHKET--------KKVFSEVMEDLY-----NYVNP-LNSR--HSPMISKETLDIVL 125

Query: 281 LAND-----LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
              D     + Y+RDF++ + G + L   Y L ING   E PQ   MRV++G+     E 
Sbjct: 126 ANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKED 182

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLA 394
              A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++
Sbjct: 183 IAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCALIS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QGG KR GA   YLE
Sbjct: 243 KSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAMYLE 302

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P++   L + 
Sbjct: 303 PWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLDEC 362

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  Y  YE++      +  R + A  LW  ++    ETG P++ +KD CN +S Q
Sbjct: 363 WGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQ 417

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
           Q++G +  SNLCTEI   +S++E AVCNL SI L  +  + + FD+ KLAS  +  V+ L
Sbjct: 418 QNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNL 477

Query: 633 DNVIDINCHTIEKAKKSNHTH 653
           + +IDIN + ++   +S   H
Sbjct: 478 NKIIDINYYPVKDGCRSRSLH 498


>gi|319790521|ref|YP_004152154.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
 gi|317115023|gb|ADU97513.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
          Length = 764

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 229/777 (29%), Positives = 386/777 (49%), Gaps = 81/777 (10%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAK 218
           +++  ++  A  GL  V++  + ++   + +DG++   +  A+I ++ +L   +EP++  
Sbjct: 19  EKIRKVINWAAQGLA-VNTLKLEAKLKLHFFDGITTRQIHEAVINTALSLTTPEEPDWRI 77

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           +  R  +  L +EV  ++ +   K  +      Y +     +++G+  + L E   + +L
Sbjct: 78  LAGRLFIFNLYKEV--SIKRGTSKLAYVGGGEEYLKVVKDLVDKGLYTKELLEKYSEEEL 135

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
           V   + +K   DF ++Y G  +L  RY      +  E+PQ  FM +A+ LA+ E ++++ 
Sbjct: 136 VEAGDYIKQSYDFLYDYAGANLLARRYLCIYEDTPFELPQEMFMTIALMLAINEPKEKRM 195

Query: 339 AV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           A   +FY+L++      +TP L N    +  LSSCF+T + D+L  I     + A ++K 
Sbjct: 196 AFVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDNLDSIMYTANQVAQISKR 255

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G + + +R  G+ I    G S GV+P++K+ ND AVAVNQ GKR GAV   L+ WH
Sbjct: 256 AGGVGVNLSRIRAQGSWIKKVFGASGGVVPWVKILNDVAVAVNQEGKRAGAVTVALDVWH 315

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLH 511
           +DV +FL+L+   GD RR+  D+     IPDLFM+RV  N  W L  P EV       L+
Sbjct: 316 LDVYDFLELKTENGDLRRKAFDIFPQLVIPDLFMERVKLNQEWLLVDPYEVERKFGYRLY 375

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +L+G EFE AY + E ++D+  +K  +++ A  L++++L     TG P+I FKD  N  +
Sbjct: 376 ELWGDEFEKAYTHVEAESDKLRLK--KRVKARELFKEILKTQVATGLPYIFFKDTANRLN 433

Query: 572 PQQHVGVVHSSNLCTEITLN-----------------SSSEETAV---CNLGSINLLAHF 611
           P +H G + + NLC E   N                 +  EE  +   CNL S+N LA+ 
Sbjct: 434 PLKHDGYIGNGNLCMESFSNFRPSKGFKTYTDGKRIINEVEECGLVHTCNLLSVN-LANI 492

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N++    +L   +R AVR+LDN I++    I +++  N  +R IG+G +G    L    
Sbjct: 493 ENDE----ELEEAVRAAVRILDNTIELTSSPIPESELHNRRYRTIGIGTLGLADYLAKRE 548

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPY   +++ + DE  E I+++ I  SV LA+ERGA+  F+GS W +G+      G L E
Sbjct: 549 IPYGR-QSLAVIDELYEKIAYYGIDESVNLAKERGAFPLFEGSDWSKGIIIGKDAGYLLE 607

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    + +  W +L  ++KT G+RN    AIAP  +   + G +  + P +   Y+
Sbjct: 608 -------KTSLKEKWLKLLSKLKTYGIRNGQLFAIAPNTSSGLLQGATPGVLPPFSRFYI 660

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
             N      +   +L     +   W                            +  +  +
Sbjct: 661 DKNQKQAVPICPPYL-----KEKFW---------------------------FYRESKTM 688

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRS 905
           D   +I+  S  QKW+D   S+ L  +   G +   IY     AW  G+KT YY+R+
Sbjct: 689 DQKEVIDVISTIQKWVDSGISMELLFNLNLGIRARDIYETFLYAWEKGIKTVYYVRT 745


>gi|310830453|ref|YP_003965554.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309249920|gb|ADO59486.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 748

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 254/779 (32%), Positives = 382/779 (49%), Gaps = 114/779 (14%)

Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREV-LTTVYKKPQKATHHEMQC 250
           ++ +D+   +  ++  LI  +EP++  + +   + KL +E  L   YK      +     
Sbjct: 14  INAADITRTIYMTAVELISIEEPDWTYIASAAYVNKLYKEAALHRGYKSYPAKPYGSFST 73

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
           L  +  C+    G+  R L E   + +L+ L   + Y++D  F+Y+G+  L +RY     
Sbjct: 74  LIKQLVCK----GIYKRELIEEFTEQELLKLEETIDYKKDKLFDYIGIVTLQERYLASDY 129

Query: 310 NGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEF---------------YNLLSSFH 350
           +G  +E+PQ   M +AM L +       EK K   +F               Y  +S  +
Sbjct: 130 DGKTMELPQERLMLIAMDLMIDAGKMLDEKGKPTDDFLPGGRKERLSYIQEAYWAMSHLY 189

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              +TPTL N+G  +  QLSSCF+ TV DDL  IF +  + A L+K  GG+G     VR 
Sbjct: 190 MTTATPTLSNAGKAKGGQLSSCFIDTVDDDLRSIFDSNTDVARLSKVGGGIGVYVGKVRS 249

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G   KS G++P+++  N+TAV+V+Q G RKG++  YL+ WH D+  FLDL+ N 
Sbjct: 250 RGAKIRGYEHKSSGLVPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILAFLDLKLNN 309

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKE-----FE 519
           GD+R R HD+ T   IPDLFM+RV +   + LF P EV       L D Y +E     F 
Sbjct: 310 GDERMRAHDIFTGVCIPDLFMERVERREEFYLFDPHEVRTFMGWSLEDYYDEEPGDGTFR 369

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y+          +     + A+ + ++M+    ETG P++ ++D  N  +P +  G++
Sbjct: 370 RKYQECVDHPLLSRV----ALPAIDIMKRMMKAQLETGTPYMFYRDTVNRANPNKAHGII 425

Query: 580 HSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFANNQF 616
           +SSNLC EI  N S+   A                       VCNL SI+L         
Sbjct: 426 YSSNLCVEIMQNMSATTVAEEKLVEIDGEKMIMTLKRPGDFVVCNLASISLARAVKEGV- 484

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               L   I   +R+LDNVID+N   + +A  +N  +RAIGLG  G    L LL I + S
Sbjct: 485 ----LERLIPIMIRMLDNVIDLNQIDVLQATHTNQKYRAIGLGTSGLHHLLALLGIMWES 540

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E  D   E+I++ AI AS++LA+E+G+Y  FKGS W+ G +  D        RD  
Sbjct: 541 EEANEYNDHLYEWIAYLAIKASMQLAKEKGSYPLFKGSEWETGKYFSD--------RDYT 592

Query: 737 AMNRTSRL----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           +  R  +      W EL  +VK  G+RN   +AIAPT + + I G + SIDP Y+ L  +
Sbjct: 593 SGKREGKFVTTEQWIELANQVKKHGIRNGYLLAIAPTGSTSIIAGTTASIDPIYKLLTYQ 652

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
              +  + + N                   DL        N++ I    +     AF +D
Sbjct: 653 EKTT--YKIANP----------------APDL--------NVKTI----QYYRKNAFLLD 682

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRSAT 909
            +  I   + RQ+ IDQ+QS NLY+  P  K  DF  ++ QAW  G+KTTYY+RS++ T
Sbjct: 683 QLASIRMNATRQRHIDQSQSFNLYI-RPDIKAKDFLVLHLQAWKSGVKTTYYVRSQALT 740


>gi|239628851|ref|ZP_04671882.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518997|gb|EEQ58863.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47FAA]
          Length = 751

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 232/743 (31%), Positives = 361/743 (48%), Gaps = 97/743 (13%)

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           ALI S+  L  +E P +    AR    +  +EV   +      + + +++ L        
Sbjct: 59  ALIRSAAELTSREAPRWEFAAARLRYCQFEQEVKERLGTLGIASLYDKLKYL-------- 110

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQ 318
            ++G+    + E+    ++      ++ ER+  F Y GL +L  RY +       +E PQ
Sbjct: 111 TDQGLYGAYILENYSREEIAQAQGFIREERNCLFTYAGLDLLLKRYVIQDRERHGLETPQ 170

Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ +A+ LA+KE +  + +    FY++LS      +TPTL N+   + QLSSCF+ TV
Sbjct: 171 EMYLGIALHLAMKEKKDVRMEWVRRFYDMLSQIKATMATPTLSNARKPYHQLSSCFIDTV 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ NDTAV
Sbjct: 231 PDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSSIRGFKGAAGGVIRWIKLVNDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ- 495
           AV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+      PDLF K   + 
Sbjct: 291 AVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPGVCYPDLFWKLAEES 350

Query: 496 -NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +  W L  P E+       L D YG+E+E  Y +  +     +  V  K     + R +
Sbjct: 351 LDQDWYLMCPHEIEAVKGYCLEDSYGEEWEERYWDCVKDQRISKRTVLLK----DVVRLI 406

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
           L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E+            
Sbjct: 407 LKSAVETGTPFAFNRDIVNRANPNSHKGMIYCSNLCTEIAQNMSPVESVSTEILNREGDT 466

Query: 598 -----------AVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINCHTIEK 645
                       VCNL S+ L     N     D ++   + TAVR LDNVID+N + +  
Sbjct: 467 VIVNTTRPGDFVVCNLASLCL----GNIDVTSDSEVEEIVSTAVRALDNVIDLNFYPLPY 522

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK +N  +R+IGLG+ G+   L    I + S E +  AD+  E I++ AI AS  L  E+
Sbjct: 523 AKVTNARYRSIGLGVSGYHHMLAKHRIRWESEEHLAFADQVFERINYAAIRASSALGAEK 582

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G+Y  F+GS W  G +                        WD L  +V   GMRN+  MA
Sbjct: 583 GSYEYFEGSQWQSGEY--------------FKKRGYEGGRWDGLAAQVAAQGMRNAWLMA 628

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT++ + + G +  +DP  +  +++   +     +   +  EL     W         
Sbjct: 629 VAPTSSTSILSGTTAGLDPVMKRFFLEEKKNS----IMPRVAPELDISTFW--------- 675

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                             ++ +A+ ID  + + +A  RQ+ IDQAQS+NLY+ +E + ++
Sbjct: 676 ------------------LYKSAYTIDQTYTVRAAGVRQRHIDQAQSVNLYITNEYTMRQ 717

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           L  +Y  AW  G+KT YY+RS+S
Sbjct: 718 LLNLYILAWEQGVKTIYYVRSQS 740


>gi|215275537|sp|P0C8H9|RIR1_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 222/740 (30%), Positives = 373/740 (50%), Gaps = 47/740 (6%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y+ + AR  + +L +   ++  K  +         L P++    ++   K + + +S +
Sbjct: 50  DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332
           D           Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   + +
Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +
Sbjct: 155 VVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++   GG+G   + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YL
Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274

Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503
           E WH D+  FL+   L+    + R    ++    W+PDLFM+ +     N G   W LFS
Sbjct: 275 ELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYLFS 334

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----G 557
           PD+  +LH ++  E    +EN  R+  +   +    ++ + V   ++++   F+T    G
Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTVIQVG 393

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614
           +P+I FKD  N +S   HVG + +SNLC E+T+        E  VCNL ++NL A    N
Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L I +
Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKIKF 513

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731
            SPEA+ + +     + + A+  S+ELA+E+G++ SF GS   +G+   D     G L  
Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLIP 573

Query: 732 VRDELAMNRT----SRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             +E     T    +R  W +L  R+  I G+RN    A+ PTAT +N  G ++  +P  
Sbjct: 574 SWEERVAQTTQGVLTRKSWRQL--RLAAIQGVRNGYLTALMPTATSSNSTGKNECFEPFT 631

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    GSI +I  IP +++  + 
Sbjct: 632 SNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHILDIPAEIRDRYK 691

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY   
Sbjct: 692 TSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHF 751

Query: 906 RSATSVEKSTLKGVDGKLNA 925
                 +K  ++  +   NA
Sbjct: 752 SPGAGTQKKIIRNSEKACNA 771


>gi|215275536|sp|P0C8H8|RIR1_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 222/744 (29%), Positives = 370/744 (49%), Gaps = 55/744 (7%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y+ + AR  + +L +   ++  K  +         L P++    ++   K + + +S +
Sbjct: 50  DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332
           D           Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   + +
Sbjct: 106 D-----------YSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +
Sbjct: 155 VVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++   GG+G   + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YL
Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274

Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503
           E WH D+  FL+   L+    + R    ++    W+PDLFM+ +     N G   W LFS
Sbjct: 275 ELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYLFS 334

Query: 504 PDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           PD+  +LH ++           +EF+  Y  Y  +     +   ++I  +  W K +   
Sbjct: 335 PDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI--IKAWFKTV--- 389

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAH 610
            + G+P+I FKD  N +S   HVG + +SNLC E+T+        E  VCNL ++NL A 
Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAF 449

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              N +DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L
Sbjct: 450 IRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASL 509

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIG 727
            I + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS   +G+   D     G
Sbjct: 510 KIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCG 569

Query: 728 LLAEVRDELAMNRT----SRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSI 782
            L    +E     T    +R  W +L  R+  I G+RN    A+ PTAT +N  G ++  
Sbjct: 570 DLIPSWEERVAQTTQGVLTRKSWRQL--RLAAIQGVRNGYLTALMPTATSSNSTGKNECF 627

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    GSI +I  IP +++
Sbjct: 628 EPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHILDIPAEIR 687

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
             + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +Y
Sbjct: 688 DRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSY 747

Query: 902 YLRSRSATSVEKSTLKGVDGKLNA 925
           Y         +K  ++  +   NA
Sbjct: 748 YCHFSPGAGTQKKIIRNSEKACNA 771


>gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 477

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 269/452 (59%), Gaps = 17/452 (3%)

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE
Sbjct: 1   KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCT
Sbjct: 61  KQG-----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCT 115

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EI   +S +E AVCNL S+ L  +  +   +D+ KLA   +  VR L+ +IDIN + + +
Sbjct: 116 EIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 175

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+ AS +LA+E 
Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A
Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIA 285

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW+E M + + 
Sbjct: 286 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQII 345

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
             +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL
Sbjct: 346 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 405

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             ++   W  GLKT  YYLR+R A +  + TL
Sbjct: 406 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL 437


>gi|9628153|ref|NP_042739.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|1172937|sp|P42491|RIR1_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|780415|gb|AAA65275.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|162849428|emb|CAN10393.1| Ribonucleotide reductase large subunit [African swine fever virus
           OURT 88/3]
 gi|291289489|emb|CBH29146.1| BA71V-F778R [African swine fever virus E75]
 gi|1097434|prf||2113434AU ribonucleotide reductase:SUBUNIT=large
          Length = 778

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 219/739 (29%), Positives = 368/739 (49%), Gaps = 45/739 (6%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y+ + AR  + +L +   ++  K  +         L P++    ++   K + + +S +
Sbjct: 50  DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332
           D           Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   + +
Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +
Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++   GG+G   + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YL
Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274

Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503
           E WH D+  FL    L+    + R    ++    W+PDLFM+ +     N G   W LFS
Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFS 334

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADR------GEIKVFRKISAVALWRKMLTMLFETG 557
           PD+  +LH ++  E    +EN  R+  +       E +     +A  + ++    + + G
Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQVG 393

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614
           +P+I FKD  N +S   HVG + +SNLC E+T+        E  VCNL ++NL A    N
Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L + +
Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731
            SPEA+ + +     + + A+  S+ELA+E+G++ SF GS   +G+   D     G L+ 
Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLSS 573

Query: 732 VRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +E     T    +R  W +L+      G+RN    A+ PTAT +N  G ++  +P   
Sbjct: 574 SWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTS 632

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    GSI +I  IP +++  + T
Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           + E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY    
Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752

Query: 907 SATSVEKSTLKGVDGKLNA 925
                +K  ++  +   NA
Sbjct: 753 PGAGTQKKIIRNSEKACNA 771


>gi|325294458|ref|YP_004280972.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064906|gb|ADY72913.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score =  330 bits (846), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 226/793 (28%), Positives = 395/793 (49%), Gaps = 81/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++  +G+    N +++  ++  A  GL+ V++  + S+   + YDG++  ++  +++
Sbjct: 3   KISVVKRNGSKEPLNIEKIRKVINWAAKGLE-VNTLKLESKLKLHFYDGITTREIHKSIV 61

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L   +EP++  +  R  +  L +EV  ++ +   K  +      Y +     +E+
Sbjct: 62  NTALQLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYIGGGKEYLKVLKDLVEK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+    + +S  + ++V   + LK E DF ++Y G  +L  RY        IE+PQ  +M
Sbjct: 120 GLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAKRYLCIYEDYPIELPQEMYM 179

Query: 323 RVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ LA  E+  ++  +  +FY+L++      +TP L N    +  LSSCF+T + D L
Sbjct: 180 SIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDSL 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     + A ++K +GG+G + + +R  G+ I    G S GV+P++++ ND AVAVNQ
Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWIRILNDIAVAVNQ 299

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GKR GAV   L+ WH+D+ +FL+L+   GD RR+  D+     IPDLFM+RV ++  W 
Sbjct: 300 EGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRKAFDIFPQVVIPDLFMERVKKDKDWL 359

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P EV       L++L+G+EFE AY   E+++ + ++K   K   +   +++L     
Sbjct: 360 LVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKESYKLKLKKKVKAKELL--KEILKTQVA 417

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---SSSEETAV------------- 599
           TG P+I FKD  N  +P +H G + + NLC E   N   S S +T +             
Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKSFKTTLEKGKIVSKVEKPG 477

Query: 600 ----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNL SIN LA+  N++    +L   +RTAVR+LDN ID+    I ++K  N  +R 
Sbjct: 478 LVHTCNLLSIN-LANIENDK----ELEDVVRTAVRILDNTIDLTTSPILESKLHNDRYRT 532

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G +G    L    IPY   +++ + DE  E I+++ I  S+ LA+ERG + +F+GS 
Sbjct: 533 IGIGTLGLADYLAKREIPYGK-QSLNLIDELYEKIAYYGIDESINLAKERGKFQAFEGSD 591

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+       ++ + R+ L      +  W  + +++K  G+RN    AIAP  +   +
Sbjct: 592 WSRGI-------IIGKDREYLLKKTHLKEKWLTVLEKLKKYGIRNGQLFAIAPNTSSGLL 644

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  + P +   Y+  N      +   +L     ++  W         Y +    N +
Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KKKFWF--------YRESKFLNQK 691

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---A 892
            + D +  I                   Q+W+D   S+ L  +   G +   I+     A
Sbjct: 692 EVIDVISTI-------------------QRWVDSGISMELLFNLNLGVRAKDIFETVIYA 732

Query: 893 WLMGLKTTYYLRS 905
           W  G+KT YY+R+
Sbjct: 733 WEKGIKTIYYVRT 745


>gi|303398730|emb|CBW46711.1| F778R [African swine fever virus Georgia 2007/1]
          Length = 778

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 219/739 (29%), Positives = 368/739 (49%), Gaps = 45/739 (6%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y+ + AR  + +L +   ++  K  +         L P++    ++   K + + +S +
Sbjct: 50  DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332
           D           Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   +  
Sbjct: 106 D-----------YSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGR 154

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +
Sbjct: 155 VVNMKMILLTYDLLSQHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++   GG+G   + +R   + I G+  KS G+  ++ + N +    NQGG R GA   YL
Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLKSNGIQNYIVLQNASQCYANQGGLRPGAYAVYL 274

Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503
           E WH D+  FL    L+    + R    ++    W+PDLFM+ +     N G   W LFS
Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGKWYLFS 334

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----G 557
           PD+  +LH ++  E    +EN  R+  +   +    ++ + V   ++++   F+T    G
Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVG 393

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614
           +P+I FKD  N +S   HVG + +SNLC E+T+        E  VCNL ++NL A    N
Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIREN 453

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L + +
Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731
            SPEA+ + +     + + A+  S+ELA+E+G++ SF GS   +G+   D     G L  
Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLVS 573

Query: 732 VRDELAMNRTSRL----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +E     T  +     W +L+      G+RN    A+ PTAT +N  G ++  +P   
Sbjct: 574 SWEERVAQTTQGVLTPKRWSQLRLAAMQ-GLRNGYVTALMPTATSSNSTGKNECFEPFTS 632

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    GSI +I  IP +++  + T
Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           + E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY    
Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752

Query: 907 SATSVEKSTLKGVDGKLNA 925
                +K  ++  +   NA
Sbjct: 753 PGAGTQKKIIRNSEKACNA 771


>gi|330984035|gb|EGH82138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 260

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/258 (62%), Positives = 204/258 (79%), Gaps = 5/258 (1%)

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           HIPYAS  AVE AD+SME IS++AI AS +LA ERGAY+SF+GSLW QG+ P+DS  +L 
Sbjct: 3   HIPYASEAAVEFADKSMEAISYYAIQASCDLADERGAYASFQGSLWSQGILPLDSQEILI 62

Query: 731 EVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             R E  + ++++S L W  +++RVK  G+RNSN MAIAPTATI+NI GV+QSI+P+YQN
Sbjct: 63  AHRGEQYIEVDKSSTLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVTQSIEPTYQN 121

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSN+SG+FTV+N  LV +LK R LWD  M+++LK++DGS+  I+R+P DLK ++ATA
Sbjct: 122 LYVKSNLSGEFTVINPHLVIDLKARGLWDAVMVNELKHYDGSVQQIDRVPQDLKTLYATA 181

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FE++  WLI+ ASRRQKW+DQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +A
Sbjct: 182 FEVEVRWLIDGASRRQKWLDQAQSLNLYIAGASGKKLDTAYRMAWYRGLKTTYYLRALAA 241

Query: 909 TSVEKSTLKGVDGKLNAV 926
           TS EKST+    GKLNAV
Sbjct: 242 TSTEKSTIN--TGKLNAV 257


>gi|162849255|emb|CAN10144.1| Ribonucleotide reductase large subunit [African swine fever virus
           Benin 97/1]
          Length = 778

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 218/739 (29%), Positives = 367/739 (49%), Gaps = 45/739 (6%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y+ + AR  + +L +   ++  K  +         L P++    ++   K + + +S +
Sbjct: 50  DYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQF----VDVVYKYKAIFDSYI 105

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKE 332
           D           Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   + +
Sbjct: 106 D-----------YNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +
Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGI 214

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++   GG+G   + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YL
Sbjct: 215 ISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGGLRPGAYAVYL 274

Query: 453 ETWHIDVEEFLD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFS 503
           E WH D+  FL    L+    + R    ++    W+PDLFM+ +     N G   W LFS
Sbjct: 275 ELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFS 334

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADR------GEIKVFRKISAVALWRKMLTMLFETG 557
           PD+  +LH ++  E    +EN  R+  +       E +     +A  + ++    + + G
Sbjct: 335 PDQAPNLHKVFDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQVG 393

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANN 614
           +P+I FKD  N +S   HVG + +SNLC E+ +        E  VCNL ++NL A    N
Sbjct: 394 NPYIGFKDAINRKSNLSHVGTITNSNLCIEVIIPCWEGDKAEQGVCNLAAVNLAAFIREN 453

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L + +
Sbjct: 454 GYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKF 513

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID---SIGLLAE 731
            SPEA+ + +     + + A+  S+ELA+E+G++ SF GS   +G+   D     G L+ 
Sbjct: 514 GSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLSS 573

Query: 732 VRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +E     T    +R  W +L+      G+RN    A+ PTAT +N  G ++  +P   
Sbjct: 574 SWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTS 632

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    GSI +I  IP +++  + T
Sbjct: 633 NLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKT 692

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
           + E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY    
Sbjct: 693 SREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFS 752

Query: 907 SATSVEKSTLKGVDGKLNA 925
                +K  ++  +   NA
Sbjct: 753 PGAGTQKKIIRNSEKACNA 771


>gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis TU502]
 gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis]
          Length = 526

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/534 (35%), Positives = 301/534 (56%), Gaps = 29/534 (5%)

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
            + +   G  K  +  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV 
Sbjct: 5   GILIKVEGSVKVPIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVE 64

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  WTL  PDE   L D++G +F+  YE YE+Q  RG     + + A  LW  +L    
Sbjct: 65  KDQDWTLMCPDECRGLQDVWGDDFKKLYEEYEKQG-RGR----KTMKAQKLWFLILQAQI 119

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFA 612
           ETG P+I +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       
Sbjct: 120 ETGTPFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKN 179

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N  FD+DKL    +   R L+ +ID+  +++++ K SN  HR +G+G+ G      +L +
Sbjct: 180 NKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRM 239

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  A ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  + 
Sbjct: 240 PYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD- 298

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   +    WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +
Sbjct: 299 --------SGLCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHR 350

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI 
Sbjct: 351 RVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIK 410

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-- 909
              +I+ A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT  
Sbjct: 411 QKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRP 470

Query: 910 ---SVEKSTLKGVDGKLNAVPVTDPNS---STHSLGI----PSSCTSDTECEVC 953
              +V++  LK    + +++      +    T  L      P++   D EC +C
Sbjct: 471 IQFTVDQQLLKSETKEKDSLETNKRQALEPETQKLIACPLRPTNMKDDEECMMC 524


>gi|237738279|ref|ZP_04568760.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420159|gb|EEO35206.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
          Length = 748

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 221/748 (29%), Positives = 364/748 (48%), Gaps = 98/748 (13%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           +G++   ++  LI  +  ++  +E ++  V  R L+ +  REV             H+  
Sbjct: 47  EGITTKKIQETLITQAVAMVSFEESDWTYVAGRLLMMETEREVF------------HKRG 94

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y + F + + E V  ++    + D+   ++  L   +  +RD  ++Y G  +L +RY 
Sbjct: 95  FSYGK-FLQTVRELVDKKIYDSRLGDYSDKEIEELGKYIAPDRDMMYDYAGANMLVNRYL 153

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           +   G+  E+PQ  FM +AM LA+ E  + + A +FY+ LS      +TP L N      
Sbjct: 154 IKYLGNTYELPQEVFMCIAMLLAINEKNRVEIAKKFYDALSLKKISLATPILANLRIPKG 213

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            LSSCF+T + D++  IF  +   A ++K  GG+G + + +R   + ++G    S GV+P
Sbjct: 214 NLSSCFITAIDDNIESIFYNIDTIAKISKNGGGVGVNISRIRAKNSMVNGYYNASGGVVP 273

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++++ NDTAVAVNQ G+R GAV   L+TWH+D+E+FL+L+   GD R + +D+     + 
Sbjct: 274 WIRIINDTAVAVNQQGRRAGAVTVALDTWHLDIEKFLELQTENGDQRTKAYDIYPQVVVS 333

Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           D+FMKRV ++  WTL  P E+      +L +LYG EFE  Y   E       + + ++I 
Sbjct: 334 DIFMKRVEKDEMWTLVDPYEIRMKYNLELCELYGVEFEKIYLQIENDET---LTLKKRIR 390

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSE 595
           A  L+++++ +  ETG P+I FKD  N  +   H+G++ + NLC E       + N + E
Sbjct: 391 ARELFKEIMKVQIETGMPYIFFKDRANRMNHNNHIGMIGNGNLCMESFSNFAPSKNYTEE 450

Query: 596 ETA-------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           E                CNL S+NL       + + D+L      AVR+LDN ID+    
Sbjct: 451 ENNGSGVRKVDLGMVHTCNLVSMNLA------EIERDELEDITGIAVRILDNTIDLTETP 504

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I ++ + N  +R IG+G MG    +    + Y   E+++  D   E I+ + + AS  LA
Sbjct: 505 ILESDRHNSNYRTIGVGTMGLADFMAKEFMIY--EESLDEIDRLYEEIALYTVKASALLA 562

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRN 760
           +ERGAY  FK S+WD+GVF           +D +     S+    W+E+   VK  G+RN
Sbjct: 563 KERGAYPYFKNSMWDRGVFF---------QKDRVWYEENSQFADKWNEVFNLVKEYGLRN 613

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               A+AP  + + + G + S++P++   +++ N  G    V    V  LK R  W    
Sbjct: 614 GELSAVAPNTSTSLLMGATASVNPTFSRFFIEKNQKGAVPRV----VKYLKDR-AW---- 664

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                              + K + A  +       ++  SR  KWI Q  S+ L  D  
Sbjct: 665 ----------------FYPEFKNVDAQTY-------VKMMSRIGKWITQGVSMELLFDLN 701

Query: 881 SGKKLDFIYR---QAWLMGLKTTYYLRS 905
              +   IY     AW  G K+ YY+R+
Sbjct: 702 KNIRAKDIYDTFLTAWKEGCKSVYYIRT 729


>gi|325261083|ref|ZP_08127821.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
 gi|324032537|gb|EGB93814.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
          Length = 763

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 228/684 (33%), Positives = 346/684 (50%), Gaps = 93/684 (13%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQA 319
           E+G+    + E     ++      L  +R+  F +  L++L  RY +    G  +E PQ 
Sbjct: 125 EQGLYGNYILEHYTQAEIEEFGTWLCAKRNDLFTFSSLELLLGRYTICGRAGEPLETPQE 184

Query: 320 FFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FM +AM LA+KE +     V  FY++LS+     +TPTL N+   + QLSSCF+ TVPD
Sbjct: 185 MFMGIAMHLAMKEKQDRSAWVRRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++KY GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV
Sbjct: 245 SLDGIYRSIDNFAKVSKYGGGMGMYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL+LR N GD+R + HD+  A   PD F K+     +
Sbjct: 305 DQLGVRQGAVAVYLDVWHRDLPEFLNLRTNNGDERMKAHDVFPAVCYPDYFWKQARDHID 364

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W L  P E+       L D +G+ +E  Y +      R E    R I    + R ++ 
Sbjct: 365 GDWYLMCPHEILTIKGYALEDSFGEAWEEKYLD----CVRDERIRKRVIPIKDVLRLIIR 420

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+   +D  N  +P  H GV++ SNLCTEI  N S+                 
Sbjct: 421 SAVETGTPFAFNRDTVNKANPNGHKGVIYCSNLCTEIAQNMSAIELEEQRTEEVDGETVV 480

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  E  VCNL S++L  H   +  DY++L+    +AVR LDNVID+N   +  A+ 
Sbjct: 481 VTVTKPGEFVVCNLASLSL-GHI--DVEDYNELSYITESAVRALDNVIDLNFFPVPYARI 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R +GLG+ G+   L    I + S E ++ A++    I + A++AS  +A+E+G+Y
Sbjct: 538 NNQRYRPVGLGVSGYHHMLAKYGIRWESQEHLDFAEKVFSDIHYAAVNASCSIAEEKGSY 597

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F+GS W  G +           +  L  +R     W++L  RV   G+RN   +A AP
Sbjct: 598 AYFEGSAWQTGEYF---------RQRNLVDDR-----WEQLAGRVAAFGLRNGYLLAAAP 643

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP                V+N + + E K                 
Sbjct: 644 TSSTSIIAGTTAGLDP----------------VMNRYFLEEKKN---------------- 671

Query: 829 GSIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
              G + R+  DL       +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +
Sbjct: 672 ---GLMPRVAPDLSMETFWYYKNAHLIDQTWSVRACGIRQRHIDQAQSMNLYITNEYTFR 728

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
            +  +Y QAW  G+KT YY+RSRS
Sbjct: 729 GVLNLYLQAWEEGVKTIYYIRSRS 752


>gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus]
          Length = 440

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 265/449 (59%), Gaps = 19/449 (4%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L    L  + D + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP 
Sbjct: 10  LDVFLLNMMDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPM 69

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L+V N+TA  ++QGG KR G +  YLE WH D+  FLD +KNTG+++ RT D+  A WIP
Sbjct: 70  LRVYNNTARYMDQGGNKRPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIP 129

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  +  W+L   DE S L++++G EFE  Y   +R+    EI+ + K  A  +W
Sbjct: 130 DLFMKRVKDDGEWSLMCLDECSGLNNVWGDEFERLYTIRKRK----EIQDYMK--ARVVW 183

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           + ++    ETG P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ 
Sbjct: 184 KAIIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVA 243

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L     + QFD+ KL   ++  VR L+ +IDIN + I KA+ SN  HR IG+G+ G   A
Sbjct: 244 LNMFVIDGQFDFFKLKDVVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADA 303

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             LL+ P+ S EA ++  +  E  ++ A+ AS ELA++ G Y S+  S    G+   D  
Sbjct: 304 FILLNYPFDSLEAQDLNKKIFE--TYGALDASCELAEKEGPYESYVRSYASNGILQYD-- 359

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            L   V  +L         W  LK ++KT G+RNS  +A  PTA+ A I   ++S+ P  
Sbjct: 360 -LWNVVPSDL-------WNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYT 411

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            N+Y +  +SG+F VVN  L+  L ++ L
Sbjct: 412 SNIYTRRVLSGEFQVVNPHLLRVLTEKKL 440


>gi|154505111|ref|ZP_02041849.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
 gi|153794590|gb|EDN77010.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
          Length = 763

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 242/736 (32%), Positives = 360/736 (48%), Gaps = 111/736 (15%)

Query: 214 PNYAKVTARFLL---------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           P +  + AR L          E+ RRE L+  YKK    T    Q LY  Y   +     
Sbjct: 86  PKWEFIAARLLYFQFSFHLKQEETRRE-LSDFYKKLVYLTR---QNLYGSYILEHYSR-- 139

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
           +  LL E+            LK ER+  F + GL +L  RY +  +    +E PQ  F+ 
Sbjct: 140 EELLLAETY-----------LKAERNNLFTFSGLDLLLKRYVIRTHDHIPLESPQEMFLG 188

Query: 324 VAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E       V+ FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 189 IALHLAMNERNDRMLWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 248

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G++I G  G + GVI ++++ NDTAVAV+Q G
Sbjct: 249 IYRSIDNFAQVSKFGGGMGMYFGKVRASGSNIRGFEGAAGGVIRWIRLVNDTAVAVDQLG 308

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  +  W 
Sbjct: 309 MRQGAVAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDMDQNWY 368

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D +G+E+E  Y +  + A   +    R ++   + R +L    E
Sbjct: 369 LMCPHEIFQAKGYHLEDYFGEEWERRYLDCVQDARISK----RTVTLKDIIRLVLRSAAE 424

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 425 TGTPFTFNRDTVNRMNPNGHAGMIYCSNLCTEIAQNMQAIEEVSKEVQTTDGDTVVVTVT 484

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++ L H       Y  +   + TAVR LDNVID+N +    AK +N  
Sbjct: 485 RPGEFVVCNLASLS-LGHLPVTDTSY--MEEIVSTAVRALDNVIDLNFYPTPYAKLTNQK 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+   L    I + S E ++ AD   E I++ AI AS  LA+E+ +YS F 
Sbjct: 542 YRSIGLGVSGYHHMLAKHGIIWESEEHLKFADTVFETINYAAILASTNLAEEKESYSLFN 601

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +         E RD  +        W  L+K+V T GMRN+  +A+APT++ 
Sbjct: 602 GSDWQSGAY--------FEKRDYHSEK------WLALQKKVATQGMRNAYLLAVAPTSST 647

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP  +  +++         V      EL     W                
Sbjct: 648 SIISGTTAGLDPILKRYFLEEKKGSMLPRV----APELSPATYW---------------- 687

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                       +  A  ID  + I +   RQ+ IDQAQS+N+Y+ ++ + +++  +Y +
Sbjct: 688 -----------YYKNAHLIDQTYSIRACGVRQRHIDQAQSMNIYITNDFTMRQIFNLYLK 736

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 737 AWEEGVKTIYYVRSKS 752


>gi|237756543|ref|ZP_04585069.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691302|gb|EEP60384.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 538

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 58/510 (11%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD
Sbjct: 1   IKIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPD 60

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
             M+R+ +     LF P E   L   +G+EF   Y+    +A+RGE+++++KI +   ++
Sbjct: 61  EIMRRIKEGEPIYLFDPAECRQLVTAWGEEFAKKYQECIEKAERGELQLWKKIDSRDFYK 120

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K L  L +TGHPW+TFKD  N  +P    GV++SSNLCTEI++ +S + TAVC L S+NL
Sbjct: 121 KYLFKLAKTGHPWLTFKDAHNRHNPCPKYGVINSSNLCTEISIPNSPQSTAVCTLASVNL 180

Query: 608 LAH--------------------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             H                    F ++  D+DKL  T+ T V  LDN++D N +  E+++
Sbjct: 181 ERHLKKVEREESNSNETTSHVSRFTSHVIDWDKLKDTLETMVVALDNILDKNFYPSEESR 240

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           ++    R IG+GLMGF  AL  L IPY S EAV++A E  +F+       S ELA+ERGA
Sbjct: 241 RNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAVQLAKEIAKFMRETVYRKSEELAKERGA 300

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +    +D   +P                                    RN+  +AIA
Sbjct: 301 FPHYYEGNYD---YP----------------------------------PRRNAVLLAIA 323

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTA+I+ I G S SID  + N++ +  +SG F VVN  L+  L+++ +W+E ++  +K +
Sbjct: 324 PTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEILEKIKAN 383

Query: 828 DGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            GSI  I+ +   + K++  TA+E+ P   I+ A+  Q++IDQA S +LY++E     ++
Sbjct: 384 QGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDME 443

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IY  AW  GLK+TYY         EK T+
Sbjct: 444 SIYMYAWEKGLKSTYYCFIDKTIKGEKYTM 473


>gi|323487826|ref|ZP_08093084.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323398560|gb|EGA91348.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 761

 Score =  324 bits (830), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 246/772 (31%), Positives = 379/772 (49%), Gaps = 118/772 (15%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           E +L+++   +   +P++  V A      L        YKK  +   +     Y +++ +
Sbjct: 45  EQSLLYALNHITMDQPDWTYVAAELYASDL--------YKKAAEHREYSASEKYGDFY-K 95

Query: 259 YIEE----GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
            + E    G+ ++ L  S    ++  L  +++ ERD  F Y+GL +L DRY      G  
Sbjct: 96  LVHELTQVGIYSKELLFSYSQEEITELGQEIEPERDLLFNYIGLFLLADRYLAKDYEGRL 155

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E+PQ  F+ +AM L   E ++++  +  E Y  +S  +   +TPTL N+G    QLSSC
Sbjct: 156 FELPQERFLVIAMTLMQNEPKEQRLELVKEAYWAMSHLYMTVATPTLSNAGKSFGQLSSC 215

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+ TV D L GI+    + A L+K  GG+G  +  VR LG+ I      S GV+P++++ 
Sbjct: 216 FIDTVDDSLDGIYLNNWDIARLSKDGGGIGIYYGKVRALGSDIKKFKDNSSGVVPWIRLL 275

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDV-EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTAV+V+Q G+R+GAV  YL+ +H D+   FLDL+ N GD+RR+ HD+ T   IPDLFM
Sbjct: 276 NDTAVSVDQLGQRQGAVAIYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVSIPDLFM 335

Query: 491 KRVTQN-------AGWTLFSPDEVS-------------DLHDLYG-KEFEIAYENYERQA 529
           +R+ +          W  F P +V               L D Y  K+ +   + Y+   
Sbjct: 336 ERLQEKDENGRSIGEWHTFCPHQVKRVMGWKDANGNALGLEDFYDEKDTKYFSDKYQEAV 395

Query: 530 DRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-----VGVVHSS 582
           D   +  K +R +  +A  R M++ L ETG P++ ++D  N ++P +H     +  ++ S
Sbjct: 396 DHLLLPRKTYRAMEIMA--RIMVSQL-ETGTPYMFYRDEVNRQNPNKHTRGRGLTSIYCS 452

Query: 583 NLCTEITLNSSSE--------------------ETAVCNLGSINLLAHFANNQFDYDKLA 622
           NLCTEI  N S+                     +  VCNL SINL     +       L 
Sbjct: 453 NLCTEIMQNMSATTIVKEYTDEDGNLVMIRKPGDFVVCNLSSINLPRAVKSG-----VLE 507

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +    R+LDNVID+N  ++ +A+ +N  +RAIGLG  G+   L L  I + S +AVE 
Sbjct: 508 RLVPIQTRMLDNVIDLNTISVGQAEVTNKKYRAIGLGTFGWHHLLALEGIHWESEKAVEF 567

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           AD+  E I++  I AS++LA+E+GA+S F GS W  G +         E R     N TS
Sbjct: 568 ADKLYEEIAYQTIRASMQLAEEKGAFSQFSGSEWHTGEY--------FERR-----NYTS 614

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W++L+++V T G+RN   MA+AP ++ A I G +  IDP Y   Y +   +  F V 
Sbjct: 615 E-RWNDLQQQVATTGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEYAEEKKNFKFKVT 673

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                               DL +H        R        H     +D  W I   + 
Sbjct: 674 ------------------APDLDHHTYDFYRRSR--------HV----LDQKWSIRQNAA 703

Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           RQ+ IDQ+ S N Y+      K+L  ++ +AW   LKTTYY+RS S   +E+
Sbjct: 704 RQRHIDQSISFNFYVPHTIKAKELLDLHLEAWKQNLKTTYYVRSTSQAEIEE 755


>gi|215275535|sp|P0C8H7|RIR1_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 779

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 207/677 (30%), Positives = 339/677 (50%), Gaps = 46/677 (6%)

Query: 285 LKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVA-MGLALKETEKEKRAVEF 342
           + Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA M   +      K  +  
Sbjct: 106 IDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGRVVNMKMILLT 165

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +++   GG+G 
Sbjct: 166 YDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGL 225

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YLE WH D+  F
Sbjct: 226 CLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTF 285

Query: 463 LD---LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDL 513
           L    L+    + R    ++    W+PDLFM+ +        +  W LFSPD+  +LH +
Sbjct: 286 LQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYLFSPDQAPNLHKV 345

Query: 514 YG----------KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           +           +EF   Y  Y  +     +   ++I  +  W K +    + G+P+I F
Sbjct: 346 FDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEI--IKEWFKTV---IQVGNPYIGF 400

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           KD  N +S   HVG + +SNLC EIT+     S  E  VCNL ++NL A    N +DY  
Sbjct: 401 KDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRENSYDYRG 460

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L          LDN+ID   +  E  ++SN  HR IG+G+ G         + + SPEA+
Sbjct: 461 LIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASFKMKFGSPEAI 520

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            + +     + + A+  SVELA+E+G++ SF GS   +G+   D    L    D+L  + 
Sbjct: 521 AMDEAIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGLLQPD----LWVRCDDLVFSW 576

Query: 741 TSRLP-----------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R+            W +L+      G+RN    A+ PTAT +N  G ++  +P   NL
Sbjct: 577 EERVAQTTQGVLTPKKWWQLRLAAMQ-GVRNGYLTALMPTATSSNSTGKNECFEPFTSNL 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F V+N +L+++LK+ +LW EA+   L    GSI +I  IP ++++ + T+ 
Sbjct: 636 YTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRERYKTSR 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY      
Sbjct: 696 EMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPG 755

Query: 909 TSVEKSTLKGVDGKLNA 925
              +K  ++  +   +A
Sbjct: 756 AGTQKKIIRNSEKACSA 772


>gi|159030367|emb|CAO91262.1| nrdA [Microcystis aeruginosa PCC 7806]
          Length = 770

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 230/786 (29%), Positives = 381/786 (48%), Gaps = 92/786 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +   +EP++  V  R  +  L ++ L  V +  Q   +            + ++  
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTL--VVRGYQYGNYE-----------KTVKTQ 139

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           VK RL  E ++ +   +L    + +  + D  ++Y G  ++  RY L     + E+PQ  
Sbjct: 140 VKNRLYDERILIYSEAELKEAGSWINPDWDIDYDYAGALLITSRYLL-----KNELPQEA 194

Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +  ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ D
Sbjct: 195 LLTCSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDD 254

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AV
Sbjct: 255 SLESIFSEITNAARISKNGGGVGVNVSRIRSTGSWVMGKANASGGIIPWIKLLNDTAIAV 314

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A 
Sbjct: 315 NQGGRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVITKAE 374

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P EV      +L +L+G+EFE AY   E   D+ E+ +++KI+A  L++ ++   
Sbjct: 375 WTLVDPYEVRTKLGIELAELWGEEFEEAYRLVEANLDK-EVLLYKKINARDLFKSIMRSQ 433

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFA 612
            ETG P+I FKD  N  +P +H G + S NLCTE   N + ++TA  CNL S+NL    A
Sbjct: 434 VETGMPYIAFKDTINRANPNKHDGYIPSVNLCTESFSNVTPDKTAHCCNLVSLNL----A 489

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N   D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    +
Sbjct: 490 N--IDKEEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKL 547

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y +   +       E I +    +S+ELA+ERGAY +F GS W QG      IG  A+ 
Sbjct: 548 SYNNRSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL----IG--AKP 598

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            +    N      W +L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +  
Sbjct: 599 LEWFLTNAVQPQRWQQLAEDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYD 658

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G   +   F+     +   W      +L+                           
Sbjct: 659 KWAKGTVPIAPPFI-----EEAFWFYPENKNLEQQQ------------------------ 689

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD---------EP----SGKKLDFIYRQAWLMGLKT 899
              ++++ +  Q+WID   S+ L  +         EP    + K +      AW +G K 
Sbjct: 690 ---VVKAIAAMQEWIDTGISMELLFNLNEGVYFPAEPNRCLTAKDIFDTLIMAWELGCKA 746

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 747 IYYVRT 752


>gi|257453170|ref|ZP_05618469.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           3_1_5R]
 gi|257467365|ref|ZP_05631676.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918495|ref|ZP_07914735.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059705|ref|ZP_07924190.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313685381|gb|EFS22216.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313692370|gb|EFS29205.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 752

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 230/793 (29%), Positives = 377/793 (47%), Gaps = 99/793 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  DG +   N +++   +  AC+GL+   + + L    +++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDGIIEDLNIEKIREKLVRACAGLE--VNMVELESKIESIYEENITTKKIQESLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFCRY 259
           S+ ++   +E ++A+V  R L+ +  REV  +    Y + +K     +   LY     +Y
Sbjct: 65  SAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGELEKTISLMLSYGLYDARLSKY 124

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +E              ++  L   +  ERD  ++Y G  +   RY L  +G   E+PQ 
Sbjct: 125 TKE--------------EIYELNQAIVPERDMVYDYAGASMFVHRYLLKYSGKIHELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FM +AM L++ E +K K A E Y  LS      +TP L N    +  LSSCF+T + D+
Sbjct: 171 VFMIIAMLLSIYEKDKVKVAKEIYEGLSLRKISLATPILANLRIPNGNLSSCFITAIDDN 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAVN
Sbjct: 231 IESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVN 290

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV   A W
Sbjct: 291 QQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGADW 350

Query: 500 TLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           TL  P E+  ++     +LYG EFE  YE  ER+    +I++ + + A  L+++++    
Sbjct: 351 TLVDPYEIRQIYGVELCELYGVEFEEVYERIERE---NKIQLKKIMKARDLFKEIMKSQL 407

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------- 595
           ETG P+I FKD  N R+   H+G++ + NLC E   N S                     
Sbjct: 408 ETGMPYIFFKDRANERNHNSHLGMIGNGNLCMESFSNFSPSKNFQEKIVGNVAIHEKEMG 467

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E   CNL S+NL          Y  L      AVR LDN ID+    + ++ K N  +R 
Sbjct: 468 EVHTCNLLSLNLAEIMEEELEKYTSL------AVRALDNTIDLTVTPLAESNKHNEKYRT 521

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G MG   A +L        E+ E   +  E I+ +A+ AS  LA++RG Y +F GS 
Sbjct: 522 IGVGAMGL--ADYLAREYMIYEESEEEISQVFERIAAYALKASAFLARDRGQYPAFVGSK 579

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W QG+F         + +D    +      W E+   V   G+RN    AIAP  + + +
Sbjct: 580 WSQGIF-------FGKTQDWYEKHSKYSDVWKEVFYLVDQYGLRNGELTAIAPNTSTSLL 632

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + S+ P++   +++ N SG        +V  LK R  W                   
Sbjct: 633 MGATASVVPTFSRFFIEKNQSG----ATPRVVKYLKDR-AW------------------- 668

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QA 892
                    +     +DP   ++  S+  +W  Q  S+ L  D     +   IY     A
Sbjct: 669 --------FYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLLTA 720

Query: 893 WLMGLKTTYYLRS 905
           W  G K+ YY+R+
Sbjct: 721 WETGCKSVYYVRT 733


>gi|294782023|ref|ZP_06747355.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481834|gb|EFG29603.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 611

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 205/609 (33%), Positives = 318/609 (52%), Gaps = 60/609 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           K++  D  +   N +++   +  AC GL+   + + L     ++Y+  ++   ++ +LI 
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGLE--VNMVELESNIDSIYEENITTQKIQASLIN 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQC-LYPEYFCRY 259
           ++ T+   +E ++A V  R L+ +  REV  +    Y    K   H ++  LY E    Y
Sbjct: 65  TAVTMTSFEESDWAYVAGRLLMMEAEREVYHSRKFSYGDFAKTIKHMVELGLYDERLLAY 124

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            EE              +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ 
Sbjct: 125 TEE--------------ELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T +
Sbjct: 171 TFMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTLF P E+      +L +LYG EFE  YE  E+  D   IK+ R +SA  L++ ++ 
Sbjct: 351 ESWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKDND---IKLKRVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETA------- 598
              ETG P+I FKD  N  +   H+G++ + NLC E       T+N   EE         
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRS 467

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISLNLA------ELTSDELEKYVALAVRALDNTIDLTVTPLKESNKHNLM 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIY--EESINEINELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVF 721
           GS WDQ +F
Sbjct: 580 GSKWDQAIF 588


>gi|132601|sp|P26685|RIR1_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|554615|gb|AAA42732.1| ribonuclease reductase [African swine fever virus]
          Length = 779

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 205/668 (30%), Positives = 345/668 (51%), Gaps = 28/668 (4%)

Query: 285 LKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGL-ALKETEKEKRAVEF 342
           + Y RD+    LG++ + + Y L + +G  +E PQ  +MRVA+ +  +      K  +  
Sbjct: 106 IDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGRVVNMKMILLT 165

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +++   GG+G 
Sbjct: 166 YDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGL 225

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YLE WH D+  F
Sbjct: 226 CLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTF 285

Query: 463 LD---LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAG---WTLFSPDEVSDLHDL 513
           L    L+    + R    ++    W+PDLFM+ +     N G   W LFSPD+  +LH +
Sbjct: 286 LQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFSPDQAPNLHKV 345

Query: 514 YGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFET----GHPWITFKDPC 567
           +  E    +EN  R+  +   +    ++ + V   ++++   F+T    G+P+I FKD  
Sbjct: 346 FDLE-RSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAI 404

Query: 568 NIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           N +S   HVG + +SNLC EIT+     +  E  VCNL ++NL A    + +DY  L   
Sbjct: 405 NRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCNLAAVNLAAFIRESSYDYRGLIEA 464

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
                  LDN+ID   +  E  ++SN  HR IG+G+ G       L + + SPEA+ I +
Sbjct: 465 AGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDE 524

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID----SIGLLAEVRDELAMNR 740
                + + A+  S+ELA+E+G++ SF GS   +G+   D       L+    + +A   
Sbjct: 525 AIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLIPSWENRVAQTT 584

Query: 741 TSRL-PWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              L P    + R+  I G+RN    A+ PTAT +N  G ++  +P   NLY +  +SG+
Sbjct: 585 QGVLTPKKWWQLRLAAIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F ++N +L+++L++ +LW E +   L    GSI +I  IP ++++ + T+ E++   L +
Sbjct: 645 FIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY         +K  ++
Sbjct: 705 HAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIR 764

Query: 918 GVDGKLNA 925
             +   NA
Sbjct: 765 NSEKACNA 772


>gi|166367093|ref|YP_001659366.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
 gi|166089466|dbj|BAG04174.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
          Length = 770

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 232/787 (29%), Positives = 377/787 (47%), Gaps = 94/787 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFCRY 259
            +  +   +EP++  V  R  +  L ++ L      Y   +K    +++  LY E    Y
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTLVARGYQYGNYEKTVKTQVKKLLYDERILIY 152

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E  +K      S ++ D            D  ++Y G  ++  RY L     + E+PQ 
Sbjct: 153 SEAELKE---AGSWINSDW-----------DIDYDYAGALLITSRYLL-----KNELPQE 193

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +  ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ 
Sbjct: 194 ALLTCSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSID 253

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+A
Sbjct: 254 DSLESIFDEITNAARISKNGGGVGVNVSRIRATGSWVMGKANASGGIIPWIKLLNDTAIA 313

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A
Sbjct: 314 VNQGGRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVINKA 373

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P EV      +L +L+G+EFE AY   E   D+ EI +++KI+A  L++ ++  
Sbjct: 374 EWTLVDPYEVRNKLGIELAELWGEEFEEAYRLVEANLDQ-EILLYKKINARDLFKSIMRS 432

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHF 611
             ETG P+I FKD  N  +P +H G +   NLCTE   N + ++TA  CNL S+NL    
Sbjct: 433 QVETGMPYIAFKDTINRANPNKHDGYIPGVNLCTESFSNVTPDKTAHCCNLVSLNL---- 488

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           AN   D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    
Sbjct: 489 AN--IDREEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRK 546

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y +   +       E I +    +S+ELA+ERGAY +F GS W QG      IG  A+
Sbjct: 547 LSYNNLSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL----IG--AK 597

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W +L   ++  G+RNS+  AIAP  + + + G + S+ P Y   + 
Sbjct: 598 PVAWFLNNAVQPQRWQQLATDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFY 657

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G   +   F+     +   W  +   +L+                          
Sbjct: 658 DKWAKGTVPIAPPFI-----EEAFWFYSENKNLEQQQ----------------------- 689

Query: 852 DPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLK 898
               ++++ +  Q+WID   S+ L         + +EP    + K +      AW +G K
Sbjct: 690 ----VVKAIATMQEWIDTGISMELLFNLNEGVYFPEEPNRCLTAKDIFDTLVMAWELGCK 745

Query: 899 TTYYLRS 905
             YY+R+
Sbjct: 746 AIYYIRT 752


>gi|284928995|ref|YP_003421517.1| ribonucleoside-diphosphate reductase, subunit alpha [cyanobacterium
           UCYN-A]
 gi|284809454|gb|ADB95159.1| ribonucleoside-diphosphate reductase, alpha subunit [cyanobacterium
           UCYN-A]
          Length = 770

 Score =  317 bits (811), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 237/804 (29%), Positives = 391/804 (48%), Gaps = 97/804 (12%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A K+K+   DG+  + +  ++  +V  ACSG +DV+S  + +     + DG++  D++  
Sbjct: 31  ASKIKVERRDGSWAALDIGKIRAVVSWACSG-KDVNSIALEAGLTTRLRDGITTKDIQNN 89

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +   +EP++  V  R  +  L + +L +   +  +   +E            +
Sbjct: 90  LINCTLEMCSPQEPDWRYVAGRLHIWSLWKNILVS---RGYQYDKYEFT----------V 136

Query: 261 EEGVKARLLHESMMDFDLVYL---ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +  V+ R   + ++ + L  L    + +  + D  ++Y G  +L  RY L       E+P
Sbjct: 137 QTKVENRQYDKRLLTYSLEELKEAGSWINSDWDIDYDYAGAVLLSSRYLLPD-----ELP 191

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q   +  A+ LA+ E  + +   A  FY  +++     +TP L N       L+SCF+  
Sbjct: 192 QEALLTCALLLAIVEAPQNRLPWAKRFYEAIATRKISLATPILANLRVPEGSLTSCFIIA 251

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DDL  I   +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA
Sbjct: 252 IDDDLESICEGVTNAARISKNGGGVGANVSRIRATGSWVMGKANASGGIIPWVKLLNDTA 311

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGG+R GA+   ++ WH+D+ EFL+++   GD RR+ +D+     + D FM+RV  
Sbjct: 312 IAVNQGGRRAGAITISVDIWHLDIPEFLEMQTENGDQRRKAYDVFPQLVLTDEFMRRVEN 371

Query: 496 NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
              WTL  P EV      +L +L+G+EFE AY   E +    +I +++KI+A  L++ ++
Sbjct: 372 KQEWTLVDPYEVRTKLGIELAELWGEEFERAYTLIESELG-NKITLYKKINARELFKNIM 430

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLA 609
               ETG P++ FKD  N  +P +HVG + S NLCTE   N    +E+  CNL S+N LA
Sbjct: 431 RSQIETGMPYLAFKDTINRANPNKHVGYIPSVNLCTESFSNVDPRKESHCCNLVSLN-LA 489

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +   ++  Y  L+S    AVR+LDN IDI       AK  N  +R IG+G MG    L  
Sbjct: 490 NIEESEIGY--LSS---LAVRILDNTIDITNPPFSYAKAHNDRYRTIGVGCMGLADWLAK 544

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y    A+    +  E + +     S+EL++ERGAY++F GS W +G      IG  
Sbjct: 545 RFLTYDDINAIS---QLFEEVGYWCTHTSMELSKERGAYNAFAGSDWSKGKL----IG-- 595

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           ++  D    N + +  W EL + +KT G+RNS+  AIAP  + + + G + SI P Y   
Sbjct: 596 SKPVDWFIENASQKERWVELSENIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRF 655

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +      G   +   F+     +   W         YH+  +                  
Sbjct: 656 FYDKWAKGTVPIAPPFI-----KESFW--------FYHENKV------------------ 684

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL--------YL-DEP----SGKKLDFIYRQAWLMG 896
            +D   +I++ S  Q+WID   S+ L        YL +EP    S   +  ++  AW  G
Sbjct: 685 -LDQQKVIKAVSAIQEWIDTGISMELLFNLNKGIYLPEEPESSLSATDIFKMFVTAWKNG 743

Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920
            K  YY+R     +V+K   K  D
Sbjct: 744 CKAIYYVR-----TVQKDDFKDFD 762


>gi|209972894|ref|YP_002300341.1| gp2.9 [Bacillus phage SPO1]
 gi|209871214|gb|ACI90970.1| gp2.9 [Bacillus phage SPO1]
          Length = 756

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 221/672 (32%), Positives = 335/672 (49%), Gaps = 99/672 (14%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKR---A 339
           ERD   ++ G+ +L DRY      S+      E+PQ  ++ +A+ L +++ + EKR    
Sbjct: 122 ERDLLLDHSGIMMLNDRYLFKYKDSKGNMHPYELPQERWLTIALTL-MQDEKPEKRMDLV 180

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            + Y +LS+ +   +TPT+ N+G    QLSSCF+ TV D L  I+   +++AM++K+ GG
Sbjct: 181 KKAYWVLSNLYITVATPTMGNAGRPDGQLSSCFIGTVEDSLDNIYDNNKDSAMVSKFGGG 240

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +R L ++I G  GKSQGVIP++K   +TA +V+Q G+RKGA+  YL+ WH DV
Sbjct: 241 IGVYMGKIRSLNSYIRGMKGKSQGVIPWIKGLENTANSVDQLGQRKGAIAVYLDIWHKDV 300

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN---------AGWTLFSPDEVS-- 508
            EFL +  N GD+RR+  D+     +PDLFM+++  N         A W LF P EV   
Sbjct: 301 MEFLQIGTNNGDERRKARDVFPGLCVPDLFMEKLQPNPETGKVDPDAKWYLFDPHEVRMV 360

Query: 509 ---DLHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
               L D Y +E     F   Y            +V  K  A A     +  L ETG P+
Sbjct: 361 MGYSLEDSYDEEEGAGTFRKRYMECVNSPLLSRTEVLVKDVAKAF----MVSLMETGMPF 416

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------SEET------------- 597
           + F+D  N ++P +H G+++ SNLCTEIT N S          +E+T             
Sbjct: 417 MFFRDEVNRKNPNKHAGMIYCSNLCTEITQNMSPTVQVEEYVENEDTDEAMIVYKVKPGD 476

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+NL   + +       L   I   VR+LDNVID+N    ++A  +N  +RAI
Sbjct: 477 YVVCNLSSVNLGKAYPSGH-----LEDIIDIQVRMLDNVIDVNNLPRKQATLTNKKYRAI 531

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L +  I + S E+VE AD+  E I++ A+ AS ++A+E+G Y +F+GS +
Sbjct: 532 GLGTFGWHHLLAVSGIKWDSEESVEFADKVYEKIAYLALRASADIAKEKGTYRAFEGSDF 591

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G +  +  G  +E          S   WD LK+     G+RN++ +A+AP    A I 
Sbjct: 592 HTGDY-FNIRGYKSE---------GSEHDWDTLKEDCMNTGIRNAHVLAVAPNGNTALIA 641

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +Q ID  Y    +      DF +                  +  D+        + + 
Sbjct: 642 GSTQGIDAFYTGTGIYYEEKKDFKI----------------PVIAPDM--------SPKT 677

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
            P   K   + AF++   + I   + RQK IDQ+ S N+Y+  +   K +  I    W  
Sbjct: 678 FPYYWK---SGAFDVSHEYTIRQNAMRQKHIDQSVSFNIYIKSDIKFKDILNIINTCWKN 734

Query: 896 GLKTTYYLRSRS 907
            LKTTYY R +S
Sbjct: 735 KLKTTYYFRGQS 746


>gi|218249009|ref|YP_002374380.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 8801]
 gi|218169487|gb|ACK68224.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8801]
          Length = 769

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 393/824 (47%), Gaps = 98/824 (11%)

Query: 128 VRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           V +  SH     P+A PK++++  D +    N  ++  +V  AC G  +V+   + +   
Sbjct: 15  VDSLHSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLT 73

Query: 187 KNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT---VYKKPQK 242
             +  G++  +++  LI  +  +    EPN+  V  R  +  L ++ L +    Y   +K
Sbjct: 74  TRLRHGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEK 133

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
             H +++    EY          +RLL  S  +  L    + +  + D  ++Y G  +L 
Sbjct: 134 TVHTKVEA--QEY---------DSRLLTYSSEE--LREAGSWINPDWDTDYDYAGAVLLT 180

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFN 360
            RY L       E+PQ   +  ++ LA  E+ + +   A +FY  +++     +TP L N
Sbjct: 181 SRYLLPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKISLATPILAN 235

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
                  L+SCF+ ++ D L  IF  +   A ++K  GG+G + + +R  G+ +      
Sbjct: 236 LRVPGGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANA 295

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+ 
Sbjct: 296 SGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVF 355

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIK 535
               +PD FM+RV   + WTL  P EV      +L +L+G++FE AY   ER+  + +I 
Sbjct: 356 PQVILPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEEAYGLIERELGQ-KIT 414

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSS 594
           ++++I A  L++ ++    ETG P++ FKD  N  +P +H G +   NLCTE   N S  
Sbjct: 415 LYKRIQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPG 474

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +E   CNL S+NL    AN   +  +L S  R AVR+LDN IDI  +  E AK  N+ +R
Sbjct: 475 KEAHSCNLVSLNL----AN--LEASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYR 528

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L    + Y   +++   ++  E   +    AS+ELA+ER  Y +F+GS
Sbjct: 529 TIGIGCMGLADWLAKNRLSY---DSLGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGS 585

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W QG      IG  A+  D    N T +  W +L + +K  G+RNS+  AIAP  + + 
Sbjct: 586 EWSQGKL----IG--AKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSL 639

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + SI P Y   +      G   +   F+                            
Sbjct: 640 VQGCTASILPVYSRFFYDKWAKGTVPIAPPFI---------------------------- 671

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----S 881
               D+    +     +D   ++++ +  Q+W+D   S+ L         + DEP    +
Sbjct: 672 ----DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSIT 727

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            K +      AW  G K  YY+R     +V+K   K  DG   A
Sbjct: 728 AKDIFDTLVLAWQSGCKAVYYVR-----TVQKDDFKESDGGCTA 766


>gi|257062092|ref|YP_003139980.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 8802]
 gi|256592258|gb|ACV03145.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8802]
          Length = 769

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 393/824 (47%), Gaps = 98/824 (11%)

Query: 128 VRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           V +  SH     P+A PK++++  D +    N  ++  +V  AC G  +V+   + +   
Sbjct: 15  VDSLHSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLT 73

Query: 187 KNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT---VYKKPQK 242
             +  G++  +++  LI  +  +    EPN+  V  R  +  L ++ L +    Y   +K
Sbjct: 74  TRLRHGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEK 133

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
             H +++    EY          +RLL  S  +  L    + +  + D  ++Y G  +L 
Sbjct: 134 TVHTKVEA--QEY---------DSRLLTYSSEE--LREAGSWINPDWDTDYDYAGAVLLT 180

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFN 360
            RY L       E+PQ   +  ++ LA  E+ + +   A +FY  +++     +TP L N
Sbjct: 181 SRYLLPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKVSLATPILAN 235

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
                  L+SCF+ ++ D L  IF  +   A ++K  GG+G + + +R  G+ +      
Sbjct: 236 LRVPGGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANA 295

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+ 
Sbjct: 296 SGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVF 355

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIK 535
               +PD FM+RV   + WTL  P EV      +L +L+G++FE AY   ER+  + +I 
Sbjct: 356 PQLILPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEQAYGLIERELGQ-KIT 414

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSS 594
           ++++I A  L++ ++    ETG P++ FKD  N  +P +H G +   NLCTE   N S  
Sbjct: 415 LYKRIQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPG 474

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +E   CNL S+NL    AN   +  +L S  R AVR+LDN IDI  +  E AK  N+ +R
Sbjct: 475 KEAHSCNLVSLNL----AN--LEASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYR 528

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L    + Y   +++   ++  E   +    AS+ELA+ER  Y +F+GS
Sbjct: 529 TIGIGCMGLADWLAKNRLSY---DSLGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGS 585

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W QG      IG  A+  D    N T +  W +L + +K  G+RNS+  AIAP  + + 
Sbjct: 586 EWSQGKL----IG--AKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSL 639

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + SI P Y   +      G   +   F+                            
Sbjct: 640 VQGCTASILPVYSRFFYDKWAKGTVPIAPPFI---------------------------- 671

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----S 881
               D+    +     +D   ++++ +  Q+W+D   S+ L         + DEP    +
Sbjct: 672 ----DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSIT 727

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            K +      AW  G K  YY+R     +V+K   K  DG   A
Sbjct: 728 AKDIFDTLVLAWQSGCKAVYYVR-----TVQKDDFKESDGGCTA 766


>gi|332708566|ref|ZP_08428540.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
 gi|332352663|gb|EGJ32229.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
          Length = 753

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 237/802 (29%), Positives = 389/802 (48%), Gaps = 99/802 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+L S +  ++  +VE AC+G +DV+   + +     + DG++  +++  LI 
Sbjct: 17  IQVIKRDGSLTSLDISKIRAVVEWACAG-KDVNPITLEAGLTTRLRDGVTTREIQDNLIN 75

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +    +P++  V  R  +  L ++ L            +E    Y +Y  R +   
Sbjct: 76  CALEMCSPDQPDWRYVAGRLQIWSLWKDTLVN--------RGYE----YGDY-PRTVRSK 122

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           V++     S++ +   +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 123 VESGQYDPSILTYTTEELKEAGSWINRDWDTDYDYAGAVLLTRRYLLGD-----ELPQEA 177

Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           F+  A+ L   E  +++   A  FY  ++      +TP L N       LSSCF+T++ D
Sbjct: 178 FLTCALLLGSVEVPEDRLGWARRFYEAIAQRKISLATPILANLRIPQGSLSSCFITSIDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  + + A ++K  GG+G + + +R  G+ + G    S GVIP++K+ NDTA+AV
Sbjct: 238 NLESIFEGITDTARISKNGGGVGVNVSRIRSTGSWVMGKANASGGVIPWIKLLNDTAIAV 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     IPD FM+RV     
Sbjct: 298 NQGGRRAGAVTVSVDVWHLDVPEFLEMQAENGDPRRKAYDIFPQLVIPDEFMRRVVNKED 357

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGE-IKVFRKISAVALWRKMLTM 552
           WTL  P EV      +L +L+ +EFE AY+  E  A  GE + +++ ++A  L++ ++  
Sbjct: 358 WTLIDPYEVRIKLGIELSELWAEEFESAYQTIE--AAIGETLTLYKTVNARELFKTIMRS 415

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHF 611
             ETG P++ FKD  N  +P QH G + + NLCTE   N      A  CNL SINL    
Sbjct: 416 QVETGMPYLAFKDTINRANPNQHQGYIPAVNLCTESFSNVEIGHAAHCCNLDSINL---- 471

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           AN   +  +L +  R AVR+LDN ID++    + A   N  +R IG+G MG    L    
Sbjct: 472 AN--IEETELPNICRLAVRILDNTIDLSTPPFKAAHSHNQKYRTIGVGCMGLADWLAKRW 529

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + + +       E I ++   AS+ELA ERGAY++F GS W +G      IG  A+
Sbjct: 530 LTYNNLKEIS---NLFEDIGYYCTHASMELAIERGAYAAFDGSEWSKGKL----IG--AK 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +    N      W  L + ++  G+RNS+  AIAP  + + + G + S+ P +   + 
Sbjct: 581 PVEWFVENSQHGERWVALSQDIQQFGIRNSHISAIAPNTSSSLVQGCTASVLPVHSKFFY 640

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G   +   F+     + + W         YH       E    D KK+       
Sbjct: 641 DKWAKGTVPIAPPFI-----KDNFW--------LYH-------ENKNFDQKKV------- 673

Query: 852 DPMWLIESASRRQKWIDQAQSLNL---------YLDEPSGK-KLDFIYR---QAWLMGLK 898
                +++ +  Q+WID   S+ L         + DEP    K   IY     AW +G K
Sbjct: 674 -----VKAIATIQQWIDTGISMELLFNLNQGVYFPDEPERTLKAKDIYETLVMAWELGCK 728

Query: 899 TTYYLRSRSATSVEKSTLKGVD 920
             YY+R     +V++   K +D
Sbjct: 729 AVYYIR-----TVQRDNFKELD 745


>gi|154278713|ref|XP_001540170.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
 gi|150413755|gb|EDN09138.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
          Length = 508

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 181/473 (38%), Positives = 262/473 (55%), Gaps = 44/473 (9%)

Query: 166 VEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           V   C GL  + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR 
Sbjct: 22  VSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYATLAARI 81

Query: 224 LLEKLRRE-------VLTTVY----KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            +  L ++       V+  +Y     K Q+      Q  Y E   R+ +E   A      
Sbjct: 82  AVSNLHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTY-ETVMRHADEFNSA------ 134

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                       + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+   +
Sbjct: 135 ------------IVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGDD 182

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + +D + GI+  L+  A
Sbjct: 183 VE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCA 239

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCA 450
           +++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QGG KR GA   
Sbjct: 240 LISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAI 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L
Sbjct: 300 YLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFCPNEAPGL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D+YG EFE  YE YE++  RG+    + + A  LW  +L    ETG+P++ +KD CN +
Sbjct: 360 ADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILEAQTETGNPFMLYKDSCNRK 414

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKL 621
           S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+ KL
Sbjct: 415 SNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKL 467


>gi|257462864|ref|ZP_05627270.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D12]
 gi|317060490|ref|ZP_07924975.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
 gi|313686166|gb|EFS23001.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
          Length = 752

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 228/795 (28%), Positives = 373/795 (46%), Gaps = 99/795 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETAL 202
           K K++  DG +   + +++   +  AC+GL+   + + L    +++Y+  ++   ++ +L
Sbjct: 5   KRKVINRDGIVEELDIEKIREKLLRACAGLE--VNMVELESKIESIYEENITTKKIQESL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTT---VYKKPQKATHHEMQ-CLYPEYFC 257
           I S+ ++   +E ++A+V  R L+ +  REV  +    Y   +K     +   LY     
Sbjct: 63  INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGNLEKTISLMLSYGLYDTRLS 122

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            Y E+              ++  L   +  ERD  ++Y G  +   RY L  NG   E+P
Sbjct: 123 IYTEQ--------------EIYELNQAIVPERDMVYDYAGASMFVHRYLLKYNGKTHELP 168

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM L++ E ++ K A E Y  LS      +TP L N       LSSCF+T + 
Sbjct: 169 QEVFMIIAMLLSIHEQDRVKVAKEIYEGLSLQKISLATPILANLRIPKGNLSSCFITAID 228

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 229 DNIESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVA 288

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV    
Sbjct: 289 VNQQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGE 348

Query: 498 GWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+  L+     +LYG +FE     YER     +I++ +K+ A  L++ M+  
Sbjct: 349 DWTLVDPYEIRKLYGVELCELYGAKFEEV---YERVEREEKIQLKKKMKARDLFKAMMKS 405

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG P+I FKD  N R+   H G++ + NLC E   N S                   
Sbjct: 406 QLETGMPYIFFKDRANERNHNSHEGMIGNGNLCMESFSNFSPSKNFQEEVLGNQAIRRKE 465

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E   CNL S+NL       +   ++L      AVR LDN ID+    + ++ K N  +
Sbjct: 466 MGEIHTCNLLSLNLA------EITEEELEKYTGLAVRALDNTIDLTVTPLAESNKHNEKY 519

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G MG    L   ++ Y   E  E   +  E I+ +A+ AS  LA++RG Y +F G
Sbjct: 520 RTVGVGAMGLADYLAREYMIYEDSE--EEISQLFEKIAAYALKASAFLAKDRGQYPAFSG 577

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W QG+F         + ++    +      W E+   V   G+RN    AIAP  + +
Sbjct: 578 SKWSQGIF-------FGKTQEWYEKHSKYAELWKEVFYLVDQYGLRNGELTAIAPNTSTS 630

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + SI P++   +++ N SG        +V  LK R  W                 
Sbjct: 631 LLMGATASIVPTFSRFFIEKNQSG----ATPRVVKYLKDR-AW----------------- 668

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR--- 890
                      +     +DP   ++  S+  +W  Q  S+ L  D     +   IY    
Sbjct: 669 ----------FYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLV 718

Query: 891 QAWLMGLKTTYYLRS 905
            AW  G K+ YY+R+
Sbjct: 719 TAWETGCKSVYYVRT 733


>gi|172036269|ref|YP_001802770.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
 gi|171697723|gb|ACB50704.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
          Length = 769

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 239/830 (28%), Positives = 395/830 (47%), Gaps = 102/830 (12%)

Query: 128 VRAAQSHSKSDAPIAP---------KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178
           + + Q    SD  I P         K+++   DG+  + N  ++  +V  AC+  +DV+S
Sbjct: 7   ITSPQQTHHSDTHITPNYHSQLGESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNS 65

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV- 236
             + +     + DG++  +++  LI  +  +    EP++  V  R  +  L ++ L    
Sbjct: 66  IALEAGLTTRLRDGITTREIQDNLINCALEMCSPTEPDWRYVAGRLHIWSLWKDTLVNRG 125

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
           Y+     T  E +    +Y           RLL  S  +  L    + +  + D  ++Y 
Sbjct: 126 YQYGNYETTVETKVEAGQY---------DNRLLTYSTTE--LREAGSWINPDWDTDYDYA 174

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCS 354
           G  +L  RY L       E+PQ   +  A+ LA  E+ + +   A +FY  ++S     +
Sbjct: 175 GAVLLTSRYLLPQ-----ELPQEALLSCALLLATVESPENRLPWARQFYEAIASRKVSLA 229

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TP L N       L+SCF+ ++ D+L  IF  +   A ++K  GG+G + + +R  G+ +
Sbjct: 230 TPILANLRVPGGSLTSCFILSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWV 289

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G N  S G+IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR
Sbjct: 290 MGKNNASGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRR 349

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQA 529
           + +D+     + D FM+RV     WTL  P E+      +L +L+G++FE AY   E + 
Sbjct: 350 KAYDVFPQLILTDEFMRRVENKEQWTLVDPYEIREKLGIELAELWGEKFEAAYRLIEAEL 409

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           DR EI ++++++A  L++ ++    ETG P++ FKD  N  +P +HVG +   NLCTE  
Sbjct: 410 DR-EITLYKRVNARELFKTIMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESF 468

Query: 590 LN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            N +  +E   CNL S+N LA+    + +Y       + AVR+LDN IDI     E AK 
Sbjct: 469 SNVTPGKEAHCCNLVSLN-LANIEEYELNY-----LCKIAVRILDNTIDITNPPFEDAKA 522

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N  +R IG+G MG    L    + Y +    EI++   E + +     S+ELA+ER  Y
Sbjct: 523 HNDRYRTIGVGCMGLADWLAKKELTYEN--LTEISN-LFEEVGYWCTHTSMELAKERSPY 579

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F+GS W++G+     IG  ++  +    N   +  W +L + +KT G+RNS+  AIAP
Sbjct: 580 DAFEGSDWNKGLL----IG--SKPVNWFVENAHKKERWIQLSEDIKTYGIRNSHITAIAP 633

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + G + SI P Y   +      G   +   F+     +   W         YH+
Sbjct: 634 NTSSSLVQGCTASILPVYSRFFYDKWAKGTVPIAPPFI-----KDSFW--------FYHE 680

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDE 879
                                 +D   ++++ S  Q+WID   S+ L         + +E
Sbjct: 681 NKT-------------------LDQQKVVKAVSTIQQWIDTGISMELLFNLNQGIYFPNE 721

Query: 880 P----SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           P    + K +      AW  G K  YY+R     +V+K   K  D    A
Sbjct: 722 PERCLTAKDIFETLLLAWKEGCKAIYYVR-----TVQKDDFKESDNNCTA 766


>gi|48696770|ref|YP_024594.1| ORF51 [Ostreid herpesvirus 1]
 gi|81986457|sp|Q6R7H4|RIR1_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase large subunit
 gi|41352434|gb|AAS00941.1| ORF51 [Ostreid herpesvirus 1]
          Length = 835

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 209/667 (31%), Positives = 334/667 (50%), Gaps = 64/667 (9%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLS 347
           RD++  Y+G+  L +   + +N    E PQ  FMRVAM +    +E     + + Y L+S
Sbjct: 155 RDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTDLSSETALEDIWQTYMLIS 214

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                 ++P LFN GT     +SCFL  + D++  I   + +   L   +GG+G +++ +
Sbjct: 215 GQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQTMTLIAKNGGIGINFSKL 274

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G+ I G  GKS G+   L + +  A +V+QG  KR GA+  YL  WH D+ ++L  R
Sbjct: 275 RATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGAIAGYLTDWHADMYDWLYSR 333

Query: 467 -KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
              +G++  + H +N    + DLFM+RV  +  W+LFSP++V  L +LYG++F  AY  +
Sbjct: 334 YSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPNDVVGLEELYGEKFVRAYRAH 393

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           E        K+ R  +SA  L+  +  M++ TG P+I FKD  N RS  +H+G + +SNL
Sbjct: 394 EANP-----KIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNERSNHKHLGTIKNSNL 448

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVID---- 637
           C EI     + E AVCNL +I  +++F N    + D++ +A     A + ++N+ID    
Sbjct: 449 CCEIVQYCDTNEIAVCNLATI-CVSNFVNVETGEIDFEGIADAAGVACKGINNLIDKQNY 507

Query: 638 ------------------INCHTIEKAKK------SNHTHRAIGLGLMGFQSALHLLHIP 673
                             +  + I+   K      SN  HR  G+G+ G       L IP
Sbjct: 508 DLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSYSNLKHRPQGIGMQGLHDVFMKLKIP 567

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-----QGVFPIDSIGL 728
           Y S  A  +A    E I + A+  SV++A+E+G Y S+    WD     +G    D +  
Sbjct: 568 YDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSY---YWDNNTHREGKLQFDFLEG 624

Query: 729 LAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
               RD   EL         W E+ K+ +  G+ NS   A  P+A+ + +    +SI+  
Sbjct: 625 FDRDRDLTHEL-------FNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDNVESIEAI 677

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N + K    G F ++N  L  +L+   +WD  M+ D++ +DGSI NIERIP ++++I+
Sbjct: 678 TSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIPKNIREIY 737

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL---MGLKT-TY 901
            TA EID   +++  +  Q +IDQ  S N+++ +     +  I     L   M LKT  Y
Sbjct: 738 KTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQLIMENVILGHKMKLKTGMY 797

Query: 902 YLRSRSA 908
           Y R   A
Sbjct: 798 YTRGIPA 804


>gi|117530177|ref|YP_851020.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|86990303|dbj|BAE79255.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|117165789|dbj|BAF36097.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|124270943|dbj|BAF45773.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM02]
 gi|124270945|dbj|BAF45774.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM03]
 gi|124270947|dbj|BAF45775.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-HPM05]
          Length = 742

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 234/800 (29%), Positives = 379/800 (47%), Gaps = 95/800 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           ++ ++  DG+   +++ R   ++  AC GL+    K  LS      ++  ++  +++  L
Sbjct: 2   QINVIHTDGSRTPYDANRAIEVINWACEGLEVDPDK--LSRRLSRRFNADITTEEIQNGL 59

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  L + + P++ KV+ R  +   RR+V         KA    +   YP  F     
Sbjct: 60  IRTAAELADLQYPDWLKVSGRLRMWDWRRKV---------KARRGYLYGNYPVAFEYLRS 110

Query: 262 EGVKARLLHESMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRI 314
           EG+    L +  +D    Y A+D+         ERD  F+  G  +L  RY L       
Sbjct: 111 EGLYEGDLIKKFLD---TYSADDIAEAGTWIDPERDMRFDISGADLLTARYLLEG----- 162

Query: 315 EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+ Q  ++  A+ L++ E   E+   A + Y+LLS      +TP + N       LSSC 
Sbjct: 163 ELLQEMWLTQALLLSMLEPAHERMTFAHKAYDLLSLGKISLATPLMSNLRQADGSLSSCH 222

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  + D    IF  + + A ++   GG+G   + VR  G+ I    G S GV P++K+ N
Sbjct: 223 IIDIDDSRESIFDNISQLAAMSANGGGVGVRISKVRARGSRIRKKKGASGGVCPWIKIIN 282

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T VA NQ G R GA    ++ WH D+ E++DLR + G +  +  D+     I D FM+R
Sbjct: 283 ATIVATNQRGVRAGACTVGIDVWHADLLEYMDLRGDAGSEHTKARDILLQFIISDEFMRR 342

Query: 493 VTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVAL 545
           V  +  W L  P E+ +     L D+YG EF  AY   E   +     + V +K+SA A+
Sbjct: 343 VILDKDWYLVCPTEIKNVFGYQLADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAI 402

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W+KML +L ETG P++ FKD  N  +P +H G++   NLC E     +S  +  C L S+
Sbjct: 403 WKKMLMLLLETGTPYVAFKDRINALNPNKHEGIIGGVNLCVESYSLFNSSYSHCCMLLSL 462

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
            +L   A+     D++A   RTAVR+LD   D+      +A+   + +R IG+G+MG   
Sbjct: 463 -VLPRIAD-----DEMADVSRTAVRLLDAACDLTTSPTPEARAHVNRYRTIGVGVMGLAD 516

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L + H+ Y   + + + ++  E I F+   ASVELA+ERGAY +F GS W +G+     
Sbjct: 517 WLAIRHLRY---QDLNLIEKLFEDICFYTTQASVELAEERGAYPAFPGSEWSKGLI---- 569

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             L    ++ +  N T    W  L +R+   G+RNS+ +A AP ++ + + G + S  P 
Sbjct: 570 --LGGRDKEWVRDNSTDPERWYALMERIIVSGIRNSHILATAPNSSTSLVQGATASFLPV 627

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +  L +  N +G  T+V  ++           EA      +H                 +
Sbjct: 628 FSRLTIDKNGAGINTIVPLYI----------KEA------FH----------------FY 655

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----------EPSGKKLDFIYRQAWLM 895
             +    P  ++ +A+  QKW+D   S  L  +            + K L+ +Y QAW  
Sbjct: 656 QESRYTHPSVVVSAAATIQKWVDTGLSTELLFNFNEHAYGFDYVATAKDLNDVYMQAWRE 715

Query: 896 GLKTTYYLRSRSATSV-EKS 914
           GLKT YY+RS    +V EKS
Sbjct: 716 GLKTVYYVRSMWQDTVTEKS 735


>gi|218961217|ref|YP_001740992.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729874|emb|CAO80786.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 753

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 199/616 (32%), Positives = 309/616 (50%), Gaps = 58/616 (9%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           L++L  RYF    NG  IE       RVA  +A  + EK +R   FY L+ + +F+ ++P
Sbjct: 10  LKVLEKRYFRKDENGVLIEDWDKMLTRVASNIASGDEEKTRR---FYQLMDAGYFLPNSP 66

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+G    QLS+CF+  + D +  IF  ++  A++ K  GG G  ++ +R   A +  
Sbjct: 67  TLMNAGGDLQQLSACFVLPIEDSMESIFETVKNAALIHKSGGGTGFSFSHLREANARVRS 126

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG S G + FLKV N    AV QGG R+GA  A L   H  + +F+  ++N  +     
Sbjct: 127 TNGVSSGPLSFLKVFNAATDAVKQGGTRRGANMAILNVDHPQILDFITCKENPAE----L 182

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  I + FM+ VT +  + L SP   +                           +
Sbjct: 183 TNFNISVGITEDFMQAVTNDDEYNLISPHTGA---------------------------I 215

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           ++K+ A  ++  ++ M  + G P I F D  N  +P   +G + S+N C E  L      
Sbjct: 216 YKKLKARDVFALIVKMAHKNGEPGIVFLDRLNNANPTPTLGKIESTNPCGEQPLLPYE-- 273

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL     +   D+DKL   +R ++  LD VID++   + + +  +  +R I
Sbjct: 274 --ACNLGSINLALLIKDGDVDWDKLKEVVRESIDFLDAVIDVSKFPLHQIETISQANRKI 331

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG+   L  L IPYAS EAV +A + MEFI F+A   S ELAQE+GA+ +F+ S++
Sbjct: 332 GLGVMGWADLLFQLKIPYASEEAVALAAKLMEFIDFYAKERSSELAQEKGAFPNFQESIY 391

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G    + I                  PWD LK+++K  G+RN+    IAPT TI+ I 
Sbjct: 392 ATGCLKREKI----------------NQPWDSLKEKIKKEGIRNATLTTIAPTGTISMIA 435

Query: 777 GVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             S  I+P +   YVK+ M G+    VN +L   L+++ +++  ++ ++    GS+  IE
Sbjct: 436 DTSSGIEPQFSLAYVKNVMDGEKLIYVNKYLQKALEEKGIYNNKLLDEI-LTRGSLAGIE 494

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWL 894
            IPDDLKK+  TA +I P W I   +  QK+ D A S  + + +  + + +   Y  A+ 
Sbjct: 495 GIPDDLKKVFQTAHDISPEWHIRMQAAFQKYTDNAVSKTINFPNSATVEDIQSAYELAYH 554

Query: 895 MGLKTTYYLRSRSATS 910
           +G K     R  S  S
Sbjct: 555 LGCKGVTVYRDGSRES 570


>gi|261884883|ref|ZP_06008922.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 348

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 153/320 (47%), Positives = 204/320 (63%), Gaps = 8/320 (2%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           F YLG++ LYDRY +   N   IE+PQ  FM +AM LA  E + +  A +FY+L+S F  
Sbjct: 3   FAYLGIKTLYDRYLIKDRNAKPIELPQHMFMAIAMFLAQNELDSQSWAKKFYDLISKFEV 62

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M +TPTL N+ T   QLSSC++ + PD++ GIF + +E A+L K+ GG+G DW  VR +G
Sbjct: 63  MLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLCKFGGGIGWDWCKVRAMG 122

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             I G    + G+IPFLK  ND AVAV+Q G RKGA+  Y+E WH+DV +FLDLRKN+G+
Sbjct: 123 GSIDGHKNAAGGIIPFLKDTNDIAVAVDQLGTRKGAIAVYIEPWHMDVSDFLDLRKNSGE 182

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +RRR H++  A WI DLFMKR++QN  WTLF P +  DL DLYG EFE  Y  YE+    
Sbjct: 183 ERRRAHELFPALWINDLFMKRLSQNERWTLFDPADTPDLCDLYGDEFEKRYIEYEKDPHI 242

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            +  +  K     LW+K+LT  FETG P++ FKD  N  +P  H G++ SSNLCTEI  N
Sbjct: 243 AKSSMLAK----ELWKKILTNYFETGMPFLCFKDNANRANPNAHKGIIRSSNLCTEIFQN 298

Query: 592 SSS---EETAVCNLGSINLL 608
           +     +   V + GS  L 
Sbjct: 299 TEPNYYQTKVVFDDGSFKLF 318


>gi|284051980|ref|ZP_06382190.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           platensis str. Paraca]
 gi|291570481|dbj|BAI92753.1| ribonucleoside-diphosphate reductase alpha chain [Arthrospira
           platensis NIES-39]
          Length = 752

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 222/805 (27%), Positives = 376/805 (46%), Gaps = 92/805 (11%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +D P   +++++  DG+L   +  R+  +V  AC GL D +   + +     + +G++
Sbjct: 6   TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64

Query: 195 ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +++  LI  +  L    +P++  V  R  +  L ++ L +      +   +E      
Sbjct: 65  TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVS------RGYQYED----- 113

Query: 254 EYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
             +C+ +   VKA    + ++ +    L      +  + D  ++Y G  +L  RY L   
Sbjct: 114 --YCQTVTTKVKAGQYDDRLLKYTPEQLREAGTWINPQWDKDYDYAGAILLTKRYLLPQ- 170

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
               E+PQ   +  A+ LA+ E   EKR   A +FY  ++      +TP L N    +  
Sbjct: 171 ----ELPQEALLSCALLLAVVEA-PEKRMFWAHKFYQAIALRQISLATPILANLRIPNGS 225

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP+
Sbjct: 226 LSSCFIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPW 285

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D
Sbjct: 286 IKLLNDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISD 345

Query: 488 LFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            FM+RV     WTL  P EV      +L +L+G+EFE++Y+  E   D  ++K++++I+A
Sbjct: 346 EFMRRVRNCENWTLVDPYEVRVKLGIELSELWGEEFELSYQKIESSLD-SKLKLYKRINA 404

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L++ ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L
Sbjct: 405 RELFKNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----L 459

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                L        D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG
Sbjct: 460 AHTCNLNSLNLANLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQCYRTIGVGVMG 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L      Y     V+      E I F+    S+EL++ERGAY +F GS W QG   
Sbjct: 520 LADWLAKRRFSY---NHVQEISNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL- 575

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
              IG  A+  D    +   ++ W EL + ++  G+RNS+  AIAP  + + + G + S+
Sbjct: 576 ---IG--AKPVDWFLTHADDKIRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASV 630

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P Y   +      G   +   F+     + + W                          
Sbjct: 631 LPCYSRFFYDKWAKGTVPIAPPFI-----KENFW-------------------------- 659

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIY 889
             +     +D   ++++ +  Q+WID   S+ L         + +EP      K +    
Sbjct: 660 -FYPENKTLDQQIVVKAVATMQQWIDTGISMELMFNLNQGVYFPEEPDRSLKAKDIFETL 718

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
             AW  G K  YY+R+    S ++S
Sbjct: 719 MAAWEQGCKAIYYVRTVQRDSFQES 743


>gi|317472118|ref|ZP_07931450.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900522|gb|EFV22504.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 676

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 210/655 (32%), Positives = 333/655 (50%), Gaps = 81/655 (12%)

Query: 173 LQDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
           LQ+  S  +L+E +++ + +G+ + +    L+ ++  L  +E P +  + AR  + +   
Sbjct: 47  LQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAAAELTSQEAPKWENIAARLKILEFES 106

Query: 231 EVLTTVYKKP-----QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND- 284
            V   + +       +K      Q LY +Y  +   E              D ++L +  
Sbjct: 107 VVKNNLEEYQIRNFYEKIVFLSQQNLYGDYILKNYAE--------------DEIHLFSSW 152

Query: 285 LKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-F 342
           ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +AM LA+KETE   + V+ F
Sbjct: 153 IRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGIAMHLAMKETEDRNQWVKRF 212

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G 
Sbjct: 213 YDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKFGGGMGL 272

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EF
Sbjct: 273 YFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQGAVAVYLDVWHRDLPEF 332

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYG 515
           L LR N GD+R + HD+  A   PD F ++   N    W L  P E+       L D YG
Sbjct: 333 LSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGNWYLMCPHEILTVKGYALEDCYG 392

Query: 516 KEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            E+   Y +    ER +        R I    + R ++    ETG P+   +D  N  +P
Sbjct: 393 TEWTEKYLDCVLDERISK-------RVIPIKDIVRMIIKSAAETGTPFTFNRDHVNRANP 445

Query: 573 QQHVGVVHSSNLCTEITLN-SSSEET----------------------AVCNLGSINLLA 609
            +H G+++ SNLCTEI  N S+S +T                       VCNL S++L  
Sbjct: 446 NRHKGIIYCSNLCTEIAQNMSASGQTEQKIEMIGGEEVVVTVTKPGDFVVCNLASLSLGN 505

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  DY++L+    +AVR LDNVID+N   +  A+ ++  +R +GLG+ G+   L  
Sbjct: 506 LCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRYRPVGLGVSGYHHMLAK 562

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             I + S E ++ A++    I + A++AS ++++E+G+Y  F GS W  G          
Sbjct: 563 HKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPGSDWQTG---------- 612

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               D       ++  W  L+ RVK  G+RN   +A APT++ + I G +  +DP
Sbjct: 613 ----DYFRKRDLTKGRWKALEDRVKKHGLRNGYLLAAAPTSSTSIITGTTAGLDP 663


>gi|126658927|ref|ZP_01730069.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126619725|gb|EAZ90452.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 768

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 233/811 (28%), Positives = 382/811 (47%), Gaps = 105/811 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+++   DG+  + N  ++  +V  AC+  +DV+S  + +     + DG++  +++  LI
Sbjct: 31  KIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDNLI 89

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +    EP++  V  R  +  L ++ L  V +  Q   +               E 
Sbjct: 90  NCALEMCSPNEPDWRYVAGRLHIWSLWKDTL--VNRGYQYGNY---------------ET 132

Query: 263 GVKARLLHESMMDFDLVYLANDLKY-------ERDFAFEYLGLQILYDRYFLHINGSRIE 315
            VK ++      +  L Y   +LK        + D  ++Y G  +L  RY L       E
Sbjct: 133 TVKTKVETGQYDNRLLTYSKTELKEAGSWINPDWDTDYDYAGAVLLTSRYLLPE-----E 187

Query: 316 MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +PQ   +  A+ LA  E+ + +   A  FY  ++      +TP L N       L+SCF+
Sbjct: 188 LPQEALLSCALLLATVESPENRLPWAKRFYEAIARRKVSLATPILANLRVPGGSLTSCFI 247

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            ++ D+L  IF  +   A ++K  GG+G + + +R  G+ + G N  S G+IP++K+ ND
Sbjct: 248 LSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLND 307

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     + D FM+RV
Sbjct: 308 TAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRV 367

Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
                WTL  P EV      +L +L+G++FE AY   E + DR EI ++++++A  L++ 
Sbjct: 368 ENKEQWTLVDPYEVREKLGIELAELWGEKFEEAYRLIEAEIDR-EITLYKRVNARELFKT 426

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINL 607
           ++    ETG P++ FKD  N  +P +HVG +   NLCTE   N +  +E   CNL S+NL
Sbjct: 427 IMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNL 486

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               AN   + D+L    + AVR+LDN IDI     + AK  N  +R IG+G MG    L
Sbjct: 487 ----AN--IEEDELNYLCKIAVRILDNTIDITNPPFDDAKSHNDRYRTIGVGCMGLADWL 540

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y   E +       E + +     S+ELA+ER  Y +F GS W +G+     IG
Sbjct: 541 AKQGLTY---ENIAEISNIFEEVGYWCTQTSMELAKERSPYDAFAGSDWSKGLL----IG 593

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             ++  +    N   +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y 
Sbjct: 594 --SKPVNWFVENANKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYS 651

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             +      G   +   F+     +   W         YH+      +++          
Sbjct: 652 RFFYDKWAKGTVPIAPPFI-----KDSFW--------FYHENKTLEQQKV---------- 688

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWL 894
                    +++ S  Q+WID   S+ L         + +EP    + K +      AW 
Sbjct: 689 ---------VKAVSTIQQWIDTGISMELLFNLNQGVYFPNEPERCLTAKDIFETLLLAWK 739

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            G K  YY+R     +V+K   K  D    A
Sbjct: 740 EGCKAIYYVR-----TVQKDDFKESDNNCTA 765


>gi|209523558|ref|ZP_03272112.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
 gi|209495963|gb|EDZ96264.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
          Length = 752

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 222/805 (27%), Positives = 377/805 (46%), Gaps = 92/805 (11%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +D P   +++++  DG+L   +  R+  +V  AC GL D +   + +     + +G++
Sbjct: 6   TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64

Query: 195 ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +++  LI  +  L    +P++  V  R  +  L ++ L +      +   +E      
Sbjct: 65  TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVS------RGYQYED----- 113

Query: 254 EYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
             +C+ +   VK+      ++ +    L    + +  + D  ++Y G  +L  RY L   
Sbjct: 114 --YCQTVTSKVKSGQYDARLLKYTPDQLREAGSWINPQWDKDYDYAGAVLLTKRYLLPE- 170

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
               E+PQ   +  A+ LA+ E   EKR   A +FY  ++      +TP L N    +  
Sbjct: 171 ----ELPQEALLSCALLLAVVEA-PEKRMFWAQKFYQAIALRQISLATPILANLRIPNGS 225

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP+
Sbjct: 226 LSSCFIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPW 285

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D
Sbjct: 286 IKLLNDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISD 345

Query: 488 LFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            FM+RV     WTL  P EV      +L +L+G+EFE AY+  E   D  E+K++++I+A
Sbjct: 346 EFMRRVRNCENWTLIDPYEVRVKLGIELSELWGEEFESAYQKIEASLDY-ELKLYKRINA 404

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L++ ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L
Sbjct: 405 RELFKNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----L 459

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                L     +  D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG
Sbjct: 460 AHTCNLNSLNLSNLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQRYRTIGVGVMG 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L      Y+  + +       E I F+    S+EL++ERGAY +F GS W QG   
Sbjct: 520 LADWLAKRRFSYSHLQEIS---NLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL- 575

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
              IG  A+  D    +   +  W EL + ++  G+RNS+  AIAP  + + + G + S+
Sbjct: 576 ---IG--AKPVDWFLTHADDKHRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASV 630

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P Y   +      G   +   F+     + + W                          
Sbjct: 631 LPCYSRFFYDKWAKGTVPIAPPFI-----KDNFW-------------------------- 659

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEPS----GKKLDFIY 889
             +     +D   ++++ +  Q+WID   S+ L         + +EP+     K +    
Sbjct: 660 -FYPENKTLDQQIVVKAVAAMQQWIDTGISMELMFNLNQGVYFPEEPARSLKAKDIFDTL 718

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
             AW  G K  YY+R+    S ++S
Sbjct: 719 MAAWEQGCKAIYYVRTVQRDSFQES 743


>gi|302349050|ref|YP_003816688.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
 gi|302329462|gb|ADL19657.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
          Length = 756

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 192/647 (29%), Positives = 328/647 (50%), Gaps = 35/647 (5%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFH 350
           ++GL +LY+RY +   G  +E P     RVA  +A  E       +    EFY ++SS  
Sbjct: 93  WVGLNLLYERYLVKRKGFVVETPNEALERVASFVAEAELSLGGSLDAARQEFYEIMSSGR 152

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           FM ++PT+ NSGT++ QL++CF+  + DD+  IF AL   A + K   G G D+TP+RG 
Sbjct: 153 FMPNSPTIMNSGTKYHQLAACFVIPLEDDMDSIFSALNTAAWVFKTGAGAGFDFTPLRGR 212

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ +    G + G + F+K+ ++ A  + +GG+R+ A+   L   H+D+E+F++ + + G
Sbjct: 213 GSPLS-FGGTASGPVSFMKLFDEVADVIKEGGRRRAAMMGVLHDVHVDLEDFINSKLSGG 271

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                  + N +  + D FM     ++ W L+ P+E   L  L   +     + + R + 
Sbjct: 272 -----LENFNISVGVHDAFMMAAASDSEWNLYDPNECPQLVGLLSGDLP---DLWRRCSP 323

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R      R + A +L  +     +ETG P + F D  N  +P   +G + ++N C E  L
Sbjct: 324 R------RTVRASSLLEEAARAAWETGDPGLVFLDTINQHNPTPRLGRIRATNPCGETPL 377

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            S       CNLGS+NL  +  +   D++ L   IR AVR LD+VI+ + +   + + + 
Sbjct: 378 LSWE----ACNLGSLNLGRYVKDEGIDWELLEHDIRIAVRFLDDVIETSWYPRPEIEAAV 433

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+MG+   L  L IPY S  A+ +AD+ MEFI++ A   S  L++ERG Y  
Sbjct: 434 KRTRKIGLGVMGWADMLAKLKIPYDSDSALYLADKLMEFIAYVARDESNRLSRERGPYPE 493

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRVKTIGMRNSN 762
           F GS+   G F  +     +++ DE          +N   +L WD ++  +   G RN+ 
Sbjct: 494 FPGSIHKDGRFNFEPQVSSSQIYDESKVSDAVHSIVNSRPKLDWDRVRSEMME-GTRNAT 552

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
              IAPT +I+ I   S SI+P Y  +Y++ +    +  +N FL + L++ +  +   I 
Sbjct: 553 MTTIAPTGSISIIADASSSIEPFYSLIYIRQSSLFSWVELNRFLRDWLQESNNLNAEKIK 612

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEP 880
           D+  H GS+  +  +P D++ +  TA +ID  W +   +  Q+W+D A  +++N+  D  
Sbjct: 613 DVIRHGGSVRGLSWVPSDVQAVLGTALDIDWRWHVRMQAVFQRWVDNAVSKTVNMRRDA- 671

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           +   +  ++ +AW +  K     R +S      S  + +D  +   P
Sbjct: 672 TVDDVKGVFIEAWRLKCKGITVFRDQSKGVQVMSVNQNIDALIREPP 718


>gi|16330926|ref|NP_441654.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
 gi|3914655|sp|P74240|RIR1_SYNY3 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1653420|dbj|BAA18334.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
          Length = 767

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 210/677 (31%), Positives = 344/677 (50%), Gaps = 47/677 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  DG+    N  ++  +V+ AC GL+ V+S  + +     + +G+S  +++  LI
Sbjct: 30  RIQVIRRDGSSTPLNIGKIRAVVDWACLGLE-VNSIALEAGLTTRLREGISTREIQDNLI 88

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTV-YKKPQKATHHEMQCLYPEYFCRYIE 261
             +  +    EP++  V  R  +  L ++ L    Y+  Q     + +    EY      
Sbjct: 89  SCALEMCSPNEPDWRYVAGRLHVWSLWKDTLVRRGYQYGQYLRTVQTKVTNGEY------ 142

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
               +R+L  S  + +L      +  + D  ++Y G  +L  RY L       E+PQ   
Sbjct: 143 ---DSRILTYS--EGELQEAGCWINSDWDTDYDYAGAVLLTSRYLLPN-----ELPQEAL 192

Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           +  A+ LA  E    + + A  FY  +++     +TP L N       L+SCF+  + D+
Sbjct: 193 LTCALLLASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDN 252

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IFG +   A ++K  GG+G + + +R  G+ + G    S GVIP+ K+ NDTA+AVN
Sbjct: 253 LESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVN 312

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     +PD FM+RV     W
Sbjct: 313 QGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDW 372

Query: 500 TLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           TL  P EV      +L +L+G++FE AY   E   D   I ++++I+A  L+++++    
Sbjct: 373 TLVDPYEVREKMGIELAELWGEQFEGAYREIESNLDT-TITLYKRINARELFKQIMRTQV 431

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFAN 613
           ETG P+++FKD  N  +P +H+G +  +NLC E   N +  + A  CNL S+NL    AN
Sbjct: 432 ETGMPYLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNL----AN 487

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D   +A   + AVR+LDN I++       AK  N+ +R IG+G MG    L    + 
Sbjct: 488 --LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGAMGLADWLAKRRLN 545

Query: 674 YASPEAVEIADESMEF--ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           Y      E+AD +  F  I +    +S+ELA+ERGAY +F GS W +G+     IG  ++
Sbjct: 546 YD-----ELADINRLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGLL----IG--SK 594

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W++L   ++T G+RNS+  AIAP  + + + G + SI P Y   + 
Sbjct: 595 PVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 654

Query: 792 KSNMSGDFTVVNSFLVN 808
                G   +   F+ N
Sbjct: 655 DKWAKGTVPIAPPFIGN 671


>gi|255025076|ref|ZP_05297062.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J2-003]
          Length = 624

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 288/545 (52%), Gaps = 54/545 (9%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARLLH 270
           P +    AR  L KL        YKK  K   +     Y  Y        E G+ +  + 
Sbjct: 82  PEWEHFAARLYLNKL--------YKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNIL 133

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
           ++    DL+     +  E+D  F Y GL +L  RY L  +  R   E+PQ  ++ +A+ L
Sbjct: 134 KNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRY-LATDSERNVYELPQERWLTIALYL 192

Query: 329 ALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
              E  KEKR     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ 
Sbjct: 193 MQNEP-KEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYD 251

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RK
Sbjct: 252 SNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRK 311

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P 
Sbjct: 312 GAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPH 371

Query: 506 EVSD-----LHDLYGKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           EV       L D Y +      F   YE  E  AD  E    + + A+ + ++++    E
Sbjct: 372 EVKAKKGWYLQDFYDESKGEGTFREKYE--ELVAD--ETISKKIVKAIDIMKRIMMSQLE 427

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEE 596
           TG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   + +
Sbjct: 428 TGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGD 487

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+NL       +   ++L   I   VR+LDNVID+N   + +A  +N  +R+I
Sbjct: 488 FVVCNLSSVNLGRAVVAEEGTLERL---IEVEVRMLDNVIDLNELPVPQATITNQKYRSI 544

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W
Sbjct: 545 GLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDW 604

Query: 717 DQGVF 721
           + G +
Sbjct: 605 NTGEY 609


>gi|332185596|ref|ZP_08387344.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
 gi|332014574|gb|EGI56631.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
          Length = 638

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 222/686 (32%), Positives = 326/686 (47%), Gaps = 107/686 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++ + RD      G + L DRY L       E  Q  F+RVA   A    +  + A   Y
Sbjct: 45  EVDHARDARLTDFGKETLNDRYLLPG-----ESYQDLFVRVASAYA----DNAEHAQRLY 95

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N GT      SC+L +VPD L GI     EN  LA   GG+G  
Sbjct: 96  DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVPDSLDGIVTTWNENVWLASRGGGIGTY 155

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 156 WGQVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFL 214

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    IPD FM+ V   A W L SP                   
Sbjct: 215 EIRKPSGDFNRKALNLHHGVLIPDAFMEAVRDGAEWHLKSPKT----------------- 257

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580
                   GE++    + A AL++K++     TG P+I F D  N   P+ H  +G+ V 
Sbjct: 258 --------GEVRA--TVDARALFQKLVETRLATGEPYIVFADHVNKNMPKHHRELGLKVS 307

Query: 581 SSNLCTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL     +  ++ TAVC L S+NL      +++  DK    I   +R LDNV
Sbjct: 308 TSNLCSEITLPTGLDHKGNDRTAVCCLSSLNLETW---DEWKDDK--QFIEDVMRFLDNV 362

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID +   +E+A  S    R++GLG+MGF S L    +P+    A        + I+
Sbjct: 363 LQDYIDRHEPGMERAAYSAARERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRMFKHIN 422

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                AS+ LA ERG          D GV                               
Sbjct: 423 AQVNQASMTLAAERGPCPDAA----DVGV------------------------------- 447

Query: 752 RVKTIGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                 M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   
Sbjct: 448 ------MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKL 501

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L ++    +A+ + +  H GS+ +++ +  + K    T+FEID  WL+E A  R  +IDQ
Sbjct: 502 LIEKSKNSDAVWNSILEHGGSVQHLDFLSPEEKDTFKTSFEIDQRWLLELAGDRTPYIDQ 561

Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AQSLNL++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G  G      +
Sbjct: 562 AQSLNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAGSGGVEADNTI 618

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + P             T   EC  CQ
Sbjct: 619 SAPKFEI------GETTDYDECLACQ 638


>gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 161/429 (37%), Positives = 252/429 (58%), Gaps = 17/429 (3%)

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  +
Sbjct: 1   MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQG-----RVRKVVKAQQLWYAI 55

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  
Sbjct: 56  IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115

Query: 610 HF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  
Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +
Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNV 235

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                       T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N
Sbjct: 236 TP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 285

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T 
Sbjct: 286 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 345

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R 
Sbjct: 346 WEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRP 405

Query: 908 ATSVEKSTL 916
           A +  + TL
Sbjct: 406 AANPIQFTL 414


>gi|330889423|gb|EGH22084.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 264

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 191/267 (71%), Gaps = 20/267 (7%)

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSN 762
           RGAY +F+GSLW +G+ P+DS  +L E R E  + ++    L W  ++ RV+  G+RNSN
Sbjct: 1   RGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSN 59

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+
Sbjct: 60  IMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMIN 119

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SG
Sbjct: 120 DLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASG 179

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV----------PVTDPN 932
           KKLD  YR AW  GLKT YYLR+ +ATS EKST+    GKLNAV           +T P 
Sbjct: 180 KKLDVTYRMAWYRGLKTPYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPR 237

Query: 933 SSTHS----LGIPSSCTSD-TECEVCQ 954
            +  +      +P +C  D  +CE CQ
Sbjct: 238 PTEAAPVGPAPVPKACAIDEPDCEACQ 264


>gi|156564206|ref|YP_001429716.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622903|gb|ABS83783.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
          Length = 767

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 212/670 (31%), Positives = 323/670 (48%), Gaps = 102/670 (15%)

Query: 289 RDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNL 345
           +D  F ++GL +L DRY      GS  E+PQ   M +A+   + E +  + A   E Y  
Sbjct: 137 KDSLFNFIGLFLLNDRYAATDYQGSLYELPQERLMMIAVTTMINEPKATRLAHIKELYWA 196

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LS+ +   +TPT  N+G  + QLSSCF+  V D L GI+ +  + A L+K  GG+   ++
Sbjct: 197 LSNLYATAATPTFANAGKSYGQLSSCFIDKVDDSLDGIYLSNMDAARLSKDGGGVALYFS 256

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR LG+ I G  GKS G  P++K+ N TA+ V+Q G+RKGA   Y+   H D+ +FL+L
Sbjct: 257 KVRALGSPIKGFEGKSSGTTPWIKMFNQTAITVDQLGQRKGAFAIYMCLDHKDIMKFLEL 316

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKR---VTQN----AGWTLFSPDEVSD--------- 509
             N GD+  R  ++ T   +PDLFMK+   V +N      W  F P ++           
Sbjct: 317 GLNNGDEADRAREIFTGVAVPDLFMKKLDEVDENGRSIGQWHTFCPHQIKQHMQWKDENG 376

Query: 510 ----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D Y ++    YE    +A    +       A+ +  +++ +  ETG P++ ++D
Sbjct: 377 NLLTLDDFYDEKDTKYYEEKYMEAVNNPLLPRDTHRAMDIMVRIMEIQLETGMPYMFYRD 436

Query: 566 PCNIRSPQQHV-GV----VHSSNLCTEITLNSSSE--------------------ETAVC 600
             N  +P +HV G+    ++ SNLCTEI  N  S                     E  VC
Sbjct: 437 QVNRMNPNKHVHGIGRTAIYCSNLCTEIAQNQVSSMIIGEYIDENENIHMVRSPGEYVVC 496

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL             LA  IR   R+LDN+IDIN  ++ +A  +N  +R IG+G 
Sbjct: 497 NLASVNLAKAVPAGV-----LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIGMGA 551

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G+   L +L + + S  AV  AD   E  ++H I +SVELA+E+G Y  F+GS W  G 
Sbjct: 552 YGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELAKEKGTYKYFEGSAWHTGE 611

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +         + RD ++        W  LK++V   G+RN   MA+AP AT A + G + 
Sbjct: 612 Y--------FDQRDYVSAK------WKALKEKVAKFGVRNGWMMALAPNATTAKVGGSTD 657

Query: 781 SIDP--SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             DP  + +    K N    F V    L                     D +  N+ R  
Sbjct: 658 GNDPITAVEGAEEKGNFK--FKVTAPGL---------------------DHNTYNVYR-- 692

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                   T   ID +W ++  +++Q+ IDQ+ S NLY+  +  G +L  I++ A  +G+
Sbjct: 693 -------KTRHHIDQLWSVKQTAKKQRHIDQSISFNLYVASDIDGAELLNIHKTAHKLGI 745

Query: 898 KTTYYLRSRS 907
           KTTYY++  S
Sbjct: 746 KTTYYVKGES 755


>gi|224539246|ref|ZP_03679785.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519128|gb|EEF88233.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 708

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 220/682 (32%), Positives = 345/682 (50%), Gaps = 93/682 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    ++  K++ AI K+F +                +++T++T+  L+   +
Sbjct: 1   MEITKRNGMAEPYNKEKVAIAIRKSFASTG--------------QSVTDETILTLVNEVE 46

Query: 89  SALIV-----HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAP 140
           + ++      H+E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H      D  
Sbjct: 47  NFILSDTGNRHVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALNHIVNETGDET 106

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLE 199
           I   LK +  D                      ++  S  +L+E + + Y   ++ ++  
Sbjct: 107 ITDTLKGIGQDFP--------------------RNEYSLTLLAEKFSSFYKPEMTPNERL 146

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           TALI ++  L  +E P++  + AR L  +L +       K  ++A    +   Y +   R
Sbjct: 147 TALIKAAVELTTQEAPDWEFIAARLLNFQLSK-------KLTEQAEFAGVLSFYEK--LR 197

Query: 259 YI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
           Y+ +EG+    +  S    ++  +A  +  ERD  F Y GL +L  RY +       IE 
Sbjct: 198 YLTDEGLYGSYILASYSPEEIEEVAGFICPERDKLFNYSGLDLLVKRYLIRTRSHEPIES 257

Query: 317 PQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            Q  ++ +A+ LA+ E     + V +FY+LLS      +TPTL N+   + QLSSCF+ T
Sbjct: 258 VQEMYLGIALHLAMPERHNRLQWVRKFYDLLSKLEVTMATPTLANARKPYHQLSSCFIDT 317

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTA
Sbjct: 318 VPDSLEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTA 377

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKRV 493
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF  M + 
Sbjct: 378 VAVDQLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKE 437

Query: 494 TQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             N  W LF P+E+       L D YG+E+E  Y +    +   +    R +S   + R 
Sbjct: 438 DLNQSWYLFCPNEIMTIKGYCLEDYYGEEWEKRYLDCVNDSRLSK----RSMSIKDIVRL 493

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+ ET           
Sbjct: 494 VLRSAVETGTPFTFNRDAVNRANPNNHRGIIYCSNLCTEIAQNMSAIETVSTEIRTEDGD 553

Query: 598 ------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                        VCNL S++ L H      D  ++   + T VR LDNVID+N + I  
Sbjct: 554 MVVVKTVRPGDFVVCNLASLS-LGHLPLE--DEQQMKEKVATVVRALDNVIDLNFYPIPF 610

Query: 646 AKKSNHTHRAIGLGLMGFQSAL 667
           A+ +NH +R+IGLG+ G+  AL
Sbjct: 611 AQITNHHYRSIGLGVSGYHHAL 632


>gi|323446056|gb|EGB02379.1| hypothetical protein AURANDRAFT_13764 [Aureococcus anophagefferens]
          Length = 343

 Score =  293 bits (751), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 154/351 (43%), Positives = 214/351 (60%), Gaps = 14/351 (3%)

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           ++G+  E PQ   MRVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQL
Sbjct: 1   LDGAIAERPQHMIMRVALGI---HGDDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQL 57

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  + +D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P 
Sbjct: 58  SSCFLLAMKEDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPM 117

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L+V NDTA  V+QGG +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIP
Sbjct: 118 LRVYNDTARYVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIP 177

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  N  W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW
Sbjct: 178 DLFMKRVEANGFWSLMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLW 232

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG P++ +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SIN
Sbjct: 233 FAILDSQVETGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASIN 292

Query: 607 LLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           L AH         FD+ KL  T     + L+ V+D+N + +E+AK SN  H
Sbjct: 293 LTAHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKH 343


>gi|149185042|ref|ZP_01863359.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
 gi|148831153|gb|EDL49587.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
          Length = 679

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 220/679 (32%), Positives = 326/679 (48%), Gaps = 102/679 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ +S 
Sbjct: 90  RDDLLTEFGKETLEDRYLLPG-----ESYQDLFARVADAFA----DDQDHAQRLYDYISR 140

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 141 LWFMPATPVLSNGGTQRGLPISCYLNSVSDSLDGIVNTWNENVWLASKGGGIGTYWGNVR 200

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 201 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDVTHPEIEEFLEIRKP 259

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V     + L SP + S                    
Sbjct: 260 SGDFNRKALNLHHGVLVTDAFMEAVRNGEEFDLLSPKDGS-------------------- 299

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V + + A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 300 -------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNRMMPKHHRDLGLKVSTSNLC 352

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDK--LASTIRTAVRVLDNVIDI 638
            EITL +      ++ TAVC L S+N+      ++++ DK  +   +R    VL N ID 
Sbjct: 353 AEITLPTGIDHLGNDRTAVCCLSSLNIEKW---DEWNTDKQFIEDIMRFLDNVLQNYIDR 409

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L    I + SP A     +  + I   A  AS
Sbjct: 410 APDEMARAKYSAMRERSVGLGVMGFHSFLQQKGIGFESPMAKVWNLKMFKHIQSKASEAS 469

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LAQERGA                       +  D  AM R S                
Sbjct: 470 MVLAQERGA---------------------CPDAEDMGAMERFS---------------- 492

Query: 759 RNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
               C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++   
Sbjct: 493 ----CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKSKN 548

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL+
Sbjct: 549 STAIWNSILEKGGSVQHLDFLTPEEKATFKTSFEIDQRWLLEFAADRAPYIDQAQSLNLF 608

Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +     K  L  ++ QAW  G+K+ YYLRS+   SV+++   G  G + A    D  ++ 
Sbjct: 609 IPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEADNTAD--AAK 660

Query: 936 HSLGIPSSCTSDTECEVCQ 954
           + L   +  T   EC  CQ
Sbjct: 661 YELAAGAEQTDYEECLACQ 679


>gi|307596370|ref|YP_003902687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
 gi|307551571|gb|ADN51636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
          Length = 895

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 217/786 (27%), Positives = 380/786 (48%), Gaps = 67/786 (8%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S S+L   +      ++  +  +      +LL  + ++V      K       + +  Y
Sbjct: 56  VSSSELSDKVQLIMLNMVTDDLKWHDAARNYLLWSVYKQVWGKDVVKAINEGRVKFEDAY 115

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY---ERDFAFEYLGLQILYDRYFL-H 308
            E F  +   G++ R+    M  +   ++    KY    RD    Y G++ L  RY L  
Sbjct: 116 REGFKAWFRTGLELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKR 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAV----EFYNLLSSFHFMCSTPTLFNSGTR 364
           ++GS  E+PQ  +MR AMG+A  E       +     FY+L+S   FM ++PTL+N+ TR
Sbjct: 176 LDGSFFEVPQYLWMRTAMGVAYAELRYGGDPITWTRRFYDLMSQLRFMPNSPTLYNAMTR 235

Query: 365 HPQLSSCFLTTVPDDL--------------YGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             QLS+CF+  + D L              +GI  AL+  A++ +  GG+G ++  +R  
Sbjct: 236 LGQLSACFVVPIDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPE 295

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  +  T G + G + F+K+ +     + QGGKR+GA    L  WH D+E+F+  +    
Sbjct: 296 GDIVRSTTGIASGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGEL 355

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D +   + N +  I D FM++  +     L +P E   L+  +G+EF   YE       
Sbjct: 356 KDIQ-LQNFNISVTIDDYFMQKALKGEDIYLINPRECPCLYKTWGEEFVKCYEGCVEAIK 414

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
            G+++++R+++A  LW K++   +++G P +  +D  N  + ++  G V++++N C+E +
Sbjct: 415 AGKVRIWRRVNAKELWDKIVKSAWDSGDPGLWNRDLANYINNEKLPGEVINATNPCSEES 474

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L     +   CNLGSINL+ +    + D+D LA  ++ AVR LD+VID+N    E+ +K 
Sbjct: 475 LY----DFESCNLGSINLVKYVHEGRIDWDSLARDVQLAVRFLDDVIDVNKLPHERLRKR 530

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG  G    L  L + Y SP+A+ +++E   FI+  A+ AS+ELA+E+G Y 
Sbjct: 531 VLETRRIGLGANGLADTLIALGLRYDSPQALAVSNELASFIARMAVRASIELAKEKGVYP 590

Query: 710 SFKGSLWDQGVFPI----DSIGLLAEVRDELAMN---RTSRLPWDELKKR---------- 752
           ++K S W +GV P     + +   +   D+ A++   +T  + +++ K R          
Sbjct: 591 AYKHSDWAEGVLPWTKHRERLEKFSSTIDKEAVDEYMKTLDVGYNDPKVRAIIDGSTAVL 650

Query: 753 -------------VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                        V T+G+RN + M+IAP  + + I GV+ SI+P +   Y+++   G  
Sbjct: 651 KGYRALDSDLSIDVSTVGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKL 710

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              N   +  L Q    DE+    ++ + G +     + D L+    TA EI   W +  
Sbjct: 711 IEYNYTALRLLMQTKTLDESTRRFVEEY-GILPRDHPLADLLR----TAHEIHWKWHVYM 765

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTL 916
                +W D   ++++N+  D P  + ++  YR AWL+     T Y     +  V  + +
Sbjct: 766 QVTWARWNDSGVSKTINMPSDTPM-EDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGV 824

Query: 917 KGVDGK 922
           KG + K
Sbjct: 825 KGAEAK 830


>gi|148554423|ref|YP_001262005.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingomonas
           wittichii RW1]
 gi|148499613|gb|ABQ67867.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           wittichii RW1]
          Length = 653

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 213/650 (32%), Positives = 320/650 (49%), Gaps = 101/650 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++ + RD      G + L DRY L       E  Q  F+RVA   A    + +  A   Y
Sbjct: 63  EVDHSRDALLTDFGKETLTDRYLLPG-----ESYQDLFVRVASAYA----DDQPHAQRLY 113

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  
Sbjct: 114 DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTY 173

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 174 WGSVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAAVYLDVSHPEIEEFL 232

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    + D FM+ V   A W L SP + S               
Sbjct: 233 EIRKPSGDFNRKALNLHHGVLLTDAFMEAVRDGAEWDLVSPKDGS--------------- 277

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580
             +R +          + A AL++K++     TG P+I F D  N   P+ H  VG+ V 
Sbjct: 278 --KRSS----------VDARALFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDVGLKVS 325

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +  ++     TAVC L S+NL      ++++ DK    +   +R LDNV
Sbjct: 326 TSNLCSEITLPTGRDQHGMDRTAVCCLSSLNLETW---DEWNGDK--RFVEDVMRFLDNV 380

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     + +AK S    R++GLG+MGF S L    +P+    A        + I+
Sbjct: 381 LQDYIDRAPDEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHIA 440

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS+ LA ERG          D GV                               
Sbjct: 441 AAAAEASMLLASERGPCPDAA----DLGV------------------------------- 465

Query: 752 RVKTIGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                 M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F++ N +L   
Sbjct: 466 ------MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLQKL 519

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L ++    +A+ + +    GS+ +++ +  D K ++ T+FEID  WLIE A+ R  +IDQ
Sbjct: 520 LAEKSKDSDAVWNSILEKGGSVQHLDFLTQDEKDVYKTSFEIDQRWLIELAADRTPYIDQ 579

Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           AQSLNL++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G
Sbjct: 580 AQSLNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAG 626


>gi|323650973|ref|YP_004243616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
 gi|323461613|dbj|BAJ77029.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
          Length = 789

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 211/711 (29%), Positives = 349/711 (49%), Gaps = 77/711 (10%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYI---EEGVKARLLHESMMDFDLVYLANDLKYER 289
           L  +YK+  K   ++ +  Y +++   +   E+G+    +  +    +LV   N +  ER
Sbjct: 104 LQELYKRASKNRSYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPER 163

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL-KETEKEKRAVEFYNLLS 347
           D  F++ GL  L  RY +   + S  E+PQ  FM  A+ L + +E ++ ++A+E Y  LS
Sbjct: 164 DELFDFAGLHSLSGRYCVKDFDKSVYELPQERFMIAALHLMMPEEKDRVEKAIELYWALS 223

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
           + +   +TPTL N+G     LSSCF+ T  D L GIF    + +  +K   G+G  +  +
Sbjct: 224 NLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFGKL 283

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G+ I G  G + G++ ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DLR 
Sbjct: 284 RATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDLRL 343

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE----- 517
           NTGD  +R +++ T   IPD FM++V +   + LF P E+       L D Y K+     
Sbjct: 344 NTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLGEK 403

Query: 518 -----FEIAYE-NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                 + A+  +Y    D   +   R++ A+ L ++ +    ETG P++ ++D  N  +
Sbjct: 404 ETPNPIDHAWTYHYYLCVDNNNLDK-RRVPAIELKKRYMKAQLETGIPYMFYRDTVNRNN 462

Query: 572 PQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSINL-----------LAHFANNQF 616
           P  H G+++SSNLC+EI  N S    ++ET     G + +           L+    N+ 
Sbjct: 463 PNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNRT 522

Query: 617 DYDKLAS-TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           + D +    I+  +R LDNVI +    + +A+ +N  +RA+G G  G  + L    I + 
Sbjct: 523 EKDGVTERVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMWD 582

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A+E   +  E I  + I AS  L +E+G+Y  F+GS W  G           E  +E
Sbjct: 583 SEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG-----------EWFEE 631

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +N    L   EL  +     MRN    AIAPT   + I G +  IDP +  +Y +   
Sbjct: 632 RDLNSPEWLEVKELASKY----MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFER-- 685

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             DF +    LV EL Q+  +       ++Y +                     ++  +W
Sbjct: 686 KKDFHL--PILVPELNQKTWFFYKPTMKMEYENEK-------------------QLAHLW 724

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
            I+  + RQK++DQA S N Y+ +    K    ++ + W  G+KT+YY RS
Sbjct: 725 AIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 775


>gi|323450453|gb|EGB06334.1| hypothetical protein AURANDRAFT_54285 [Aureococcus anophagefferens]
          Length = 555

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 260/470 (55%), Gaps = 26/470 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C G   + +    +  +  + +YDG++  +L+   
Sbjct: 7   MQVVKRNGKKETVRYDKITSRIKKLCYGFDAKYIKPNQITQKVIQGVYDGVTTHELDELA 66

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             ++  +  + P+++ + AR  +  L +   +  + V +K  K  H + +   P      
Sbjct: 67  AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTK--KPAALIS- 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +E       H+  ++  +VY       +RDF ++Y G + L   Y + ++G+  E PQ 
Sbjct: 124 -DETYATVQKHKDAINAAIVY-------DRDFEYDYFGFKTLERSYLMRLDGAIAERPQH 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRVA+G+     +    A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + +D
Sbjct: 176 MIMRVALGI---HGDDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKED 232

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V
Sbjct: 233 SIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYV 292

Query: 439 NQGGKR-KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG+R KG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N 
Sbjct: 293 DQGGRRRKGSFAIYLEPWHADIEMWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANG 352

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L D +G +FE  YE YE      E    + I A  LW  +L    ETG
Sbjct: 353 FWSLMCPNECPGLADCHGAKFEALYERYE-----AEGCARKAIPAQQLWFAILDSQVETG 407

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            P++ +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL
Sbjct: 408 TPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINL 457


>gi|126658753|ref|ZP_01729898.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126620015|gb|EAZ90739.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 728

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 316/653 (48%), Gaps = 85/653 (13%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNL 345
           E D  F++ G  +L  RY      S  E+ Q  F+  A+ LA+ E   E+   A  FY  
Sbjct: 135 ELDKVFDHAGATLLTQRYL-----SDDELIQEVFLVTALVLAIPERMDERMSYARAFYMA 189

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++      +TP L N        +SCF+ +V D +  IF  ++  A +++  GG+G + +
Sbjct: 190 IAHRKISLATPILANLRFEGGSGTSCFILSVEDSIESIFDNVKNTARISQEGGGVGINLS 249

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G+ +      S G++ ++++ NDTA+AVNQGG+R GAV    + WH+D+ EFL++
Sbjct: 250 RIRAVGSWVRSKPNVSGGLMSWIRILNDTAIAVNQGGRRAGAVTVAADIWHLDIPEFLEM 309

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEI 520
           R   GD RR+ +D+     + D FM+RV Q A WTL  P EV      DL +L+G EF+ 
Sbjct: 310 RSEAGDQRRKAYDVFPQVVVTDNFMRRVEQGATWTLVDPYEVKQVLGIDLPNLWGTEFDD 369

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           AYE  E  A  G++ + + ++A  L+  +L    ETG P+I FKD  N  +P +H+G++ 
Sbjct: 370 AYEQIEEAASMGDLTLAQTVNARNLFIDILETQVETGLPYIAFKDALNRANPNKHIGIIP 429

Query: 581 SSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           S NLC E  ++    +    CNL S+NL       Q + D+L    + AVR+LDN ID+ 
Sbjct: 430 SVNLCCESFSVVVPGKLAHSCNLASVNLA------QVEDDELPEICQLAVRLLDNTIDVT 483

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              I +A+  N   R IG+G++G    L    + Y      EI +   EF S+  +  SV
Sbjct: 484 TAPIGEARNHNRELRTIGVGVLGLADYLAKRGLRYQDKR--EIRELFKEF-SYQCLMGSV 540

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA+ERG+Y +   S +  G              + L  +R+ R  W  L       G+R
Sbjct: 541 LLAKERGSYPAINSSEYGMG--------------NILGKSRSQRPEWKALYDLFDFYGIR 586

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAP  + + I G + S+ P Y     +S   GD      FL      R+  D  
Sbjct: 587 NSHIMAIAPNTSSSLIQGCTASVLPPYAKFNAESLGKGDVMKAVPFL------REYGD-- 638

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
                 Y +                      ID   ++++ +  QKW+D   S+ L  + 
Sbjct: 639 -----NYQENQ-------------------RIDQRVVVDAIAEMQKWVDTGISMELVFNL 674

Query: 879 -----EPSGKKLDF--IYR---QAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
                EP+ K +D   IY    +AW  GLK  YY+R     +V++  L  VDG
Sbjct: 675 NPDVYEPN-KTVDASDIYDTALRAWRRGLKAIYYIR-----TVKEDRLSEVDG 721


>gi|114327551|ref|YP_744708.1| ribonucleotide-diphosphate reductase subunit alpha [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315725|gb|ABI61785.1| ribonucleoside-diphosphate reductase alpha chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 650

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 215/647 (33%), Positives = 307/647 (47%), Gaps = 97/647 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY +       E  Q  F RV+        +  + A   Y+ +S 
Sbjct: 61  RDALLTDFGKATLNDRYLMPG-----ESYQDLFARVSSYYG----DNAEHAQRIYDYMSR 111

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W  +R
Sbjct: 112 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVGLWNENVWLASKGGGIGSYWGNLR 171

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+ 
Sbjct: 172 SIGEKV-GQNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFVELRRP 230

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + S                   
Sbjct: 231 TGGDPNRKALNLHHGVLLSDAFMRAVDHDEEWALLSPKDKS------------------- 271

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNL 584
                   V RKISA ALW ++LT   E G P+I F D  N   P  Q+  G+ V +SNL
Sbjct: 272 --------VIRKISARALWIRILTARMEQGEPYIVFSDHVNRALPEHQKLAGLEVKTSNL 323

Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C+EITL +       + TAVC L S+NL    A     +    + I   +  LDNV    
Sbjct: 324 CSEITLPTGIDQHGKQRTAVCCLSSLNLETWHA-----WKDHPTFIEDVMLFLDNVLQDF 378

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID    T+E+A+ S    R++GLG+MGF S L    +P+ S  A        + I   A 
Sbjct: 379 IDRAPDTMERARYSAMRERSVGLGVMGFHSFLQAERVPFESVVAKVWNLRMFKHIRAQAD 438

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS  LA ERGA         D G                                    
Sbjct: 439 KASRMLAAERGACPDAA----DYG------------------------------------ 458

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           +  R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L +R 
Sbjct: 459 LNERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQQLLAERG 518

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             +E + S +  + GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I Q+QS+N
Sbjct: 519 QDNEDVWSSITLNKGSVQHLDFLTEAEKAVFKTAFELDQRWIIEHAADRTPYICQSQSVN 578

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           L+L     K+ L  ++  AW  GLK+ YY RS S    +  + K V+
Sbjct: 579 LFLPANVHKRDLHQVHMLAWKRGLKSLYYCRSLSIQRADAVSEKAVN 625


>gi|15921522|ref|NP_377191.1| ribonucleoside-diphosphate reductase large subunit [Sulfolobus
           tokodaii str. 7]
 gi|15622308|dbj|BAB66300.1| 831aa long hypothetical ribonucleoside-diphosphate reductase large
           subunit [Sulfolobus tokodaii str. 7]
          Length = 831

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 201/677 (29%), Positives = 345/677 (50%), Gaps = 62/677 (9%)

Query: 288 ERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE-----TEKEKRAV 340
           ERD    Y  L++L  RY L   N  R IE PQ  F RVA  LA  E     +E E + +
Sbjct: 109 ERDLLLTYNALKVLEARYLLKDPNTLRYIETPQMMFRRVAKHLANVERQYGRSESEVKQL 168

Query: 341 E--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAML 393
           E  FY ++S   F+ +TPTL NSGTR   LS+CF+  V D +      GI+ AL+  A++
Sbjct: 169 EEKFYKIMSELKFLPNTPTLMNSGTRLGILSACFVIPVRDSMITPNGEGIYDALRAMAVV 228

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            +  GG G D++ +R  G  +  T G + G + F+++ + +   V QGGKR+GA    + 
Sbjct: 229 HQQGGGTGFDFSELRPKGDIVASTAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMH 288

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK-------------RVTQNAGWT 500
            WH D+EEF+  +     D +   + N +  + D FM+             R T+ A W 
Sbjct: 289 VWHPDIEEFIKSKTGQLKDTQ-LQNFNISVGVYDYFMQAVERGDVVPLINPRKTKIADWD 347

Query: 501 LFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVF---------RKISAVALWRKML 550
            +       +++ + +E  ++  E      D  E K+           K +A+  W    
Sbjct: 348 YYMSKARGYMNEEWIQEVILSELEEKGGTVDLAESKIITIDEALVIAEKENAITQWVNAR 407

Query: 551 TML-------FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +        +++G P + F D  N R P  ++G ++++N C E  L         CNLG
Sbjct: 408 NLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYLGKINATNPCGEEPLLPWES----CNLG 463

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL     + + D+D LA TIR AVR+LDNVID N + +++ +++    R +GLG+MG 
Sbjct: 464 SINLEKFVVDGKIDWDGLAETIRYAVRLLDNVIDANRYPLKQIEEATKKTRKVGLGVMGL 523

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL----WD-- 717
              L  L IPY S +AV ++ +  +FI +HA   S+E+A+E+G++ ++   L    W+  
Sbjct: 524 ARMLIKLGIPYDSVDAVYLSYQLAKFIYYHAFKESIEIAKEKGSFPAYDAKLYKDIWESA 583

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +  + I  I  + +   +     TS   +L +D+LK+     G+RN+  +++APT TI+ 
Sbjct: 584 KDFYEILEIMGIKDKPSDYVKKLTSIVDKLDFDKLKEDRIKYGLRNATVVSVAPTGTISI 643

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G S SI+P +   ++++   G F  ++   ++ L++ +L +  ++  +    G IG+ 
Sbjct: 644 IAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLDYLRKYELDNPEVVKKIA-ETGMIGDN 702

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQA 892
             +P  ++K+  TA E+ P + +   +  Q+W D   ++++NL  +EP  + ++ +Y  A
Sbjct: 703 PFMPKSMRKVFRTAHEVSPEYHLLHQAAWQQWNDSGTSKTINLRSEEPP-ETVERVYMLA 761

Query: 893 WLMGLKTTYYLRSRSAT 909
           W +G+K     R +S +
Sbjct: 762 WKLGIKGVTVYRDKSKS 778


>gi|83859673|ref|ZP_00953193.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852032|gb|EAP89886.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 626

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 218/676 (32%), Positives = 323/676 (47%), Gaps = 101/676 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RV+   A    +  + A   Y+ +S+
Sbjct: 42  RDALLTDFGKKTLVDRYLLPG-----ESYQDMFARVSTAYA----DDLEHAQRLYDYMSN 92

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL +V D L  I     EN  LA   GG+G  W  VR
Sbjct: 93  LWFMPATPVLSNGGADRGLPISCFLNSVDDSLGDIVSTWTENVWLASNGGGIGTYWGNVR 152

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 153 SIGEKV-GQNGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 211

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    + D FM+ V ++  + L SP                        
Sbjct: 212 SGDFNRKSLNLHHGLNVSDAFMEAVAKDEEFELISPRS---------------------- 249

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
              GE  V + ++A  LW+K+L +  +TG P+I F D  N   P  Q+ +G+ V  SNLC
Sbjct: 250 ---GE--VVKTVNARKLWQKILEVRLQTGEPYILFSDTVNNNLPAHQRKLGLKVRQSNLC 304

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +EITL +      ++ TAVC L S+N    F   + D   L    R    +L + I+   
Sbjct: 305 SEITLPTGVDHLGNDRTAVCCLSSLN-AEKFLEWKDDERFLEDIFRFLDNILQDFIERAP 363

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+AK S    R++GLGLMGF S L  +++P+ S  A        + I   A  ASV+
Sbjct: 364 DEMERAKYSAARERSVGLGLMGFHSFLQSMNVPFESAMAQSWNKRMFQHIRQGADKASVK 423

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERGA         D GV                                      R 
Sbjct: 424 LAEERGACPDAA----DNGV------------------------------------KARF 443

Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG FTV N +L   L+++     A
Sbjct: 444 SHKLAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPYLEKILEEKGKNTPA 503

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           + S +  H+GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I QAQSLNL+L  
Sbjct: 504 VWSSILEHEGSVQHLDCLDELEKDVFKTAFELDQRWVIEHAADRSPYICQAQSLNLFLPG 563

Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
              K  L  ++  AW  G+K+ YY RS+   SV+++   G   K       D  S + S 
Sbjct: 564 DVNKWDLHMLHWSAWEKGVKSLYYCRSK---SVQRAAYAGAGEK-------DEMSKSLSD 613

Query: 939 GIPSSCTSDTECEVCQ 954
             P       EC  CQ
Sbjct: 614 AAPKDY---DECLACQ 626


>gi|159041217|ref|YP_001540469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
 gi|157920052|gb|ABW01479.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
          Length = 877

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 209/699 (29%), Positives = 335/699 (47%), Gaps = 67/699 (9%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           L N L   RD    Y G++ L  RY +  ++GS  E PQ  +MR+AMG+A  E +     
Sbjct: 149 LMNKLDPSRDLLLTYNGVRTLMSRYLMKRLDGSFFETPQYMWMRIAMGVAYSEVKYGNDP 208

Query: 340 VE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV------------PDDLYGI 383
           ++    FY+L+S   F+ ++PT+FN+ T+  +LS+CF+  V            P+  +GI
Sbjct: 209 IKWVEKFYDLVSQLKFLPNSPTMFNALTKLGELSACFVIPVDDCLSKDSNRDNPNCFFGI 268

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A +  A+L +   G+G  +  +R  G  +  T+G + G + F+++ +     + QGGK
Sbjct: 269 MDAAKLAALLFQAGAGVGYQFGELRPEGDVVKSTSGVASGPLSFMRLFDTLVDVIKQGGK 328

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    L  WH D+E+F+  +     D +   + N +  I D FM +  +     L +
Sbjct: 329 RRGAQMGMLFWWHPDIEKFITSKTGRLKDVQ-LQNFNISVTIDDYFMTKALRGEDVYLLN 387

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P E + L+  +G+EF   YE    +   G +KV+R+++A  LW K++   +++G P +  
Sbjct: 388 PRECTCLYQTWGQEFIKCYEECVSKVKAGLVKVWRRVNAGELWSKIVESAWDSGDPGLWN 447

Query: 564 KDPCNIRSP------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           +D  N++         +   V++ +N C E+ L         CNLGSINL  +   N  D
Sbjct: 448 RDVANMKIEYVNDVVSEKYRVINGTNPCGEVALYPFES----CNLGSINLTKYINGNSID 503

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +  LA+ I  AVR LD+VID N H  E   ++N   R IGLG+ G+   L  L IPY SP
Sbjct: 504 WVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRRIGLGINGWADVLVSLDIPYDSP 563

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726
           +A+ +AD  M F++  A+ ASVELA+E+G +  +  S W  G  P           ++  
Sbjct: 564 KAIALADVVMGFVARVAVRASVELAKEKGPFPLWPSSKWRSGFLPWRVHDERVSKMLEVK 623

Query: 727 GLLAEVRD-----ELAMNRTSRLPW-------------DELKKRVKTIGMRNSNCMAIAP 768
           G+ ++V +     +L       LP              DEL K   T+G+RN   ++IAP
Sbjct: 624 GVSSDVEEYLEILKLGYGELGGLPNKAEEYLAKLRATDDELIKDASTVGVRNGALISIAP 683

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + I GV+ SI+P +   YV++   G     N   + +LK  +  D    S +    
Sbjct: 684 EGSRSLIAGVNSSIEPIFAIAYVRNLSIGKLIEYNYTALRKLKDSNALDNETTSKV-LES 742

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDF 887
           G + +   +   LK    TA EI   W +       KW D   S  + +   + K+ ++ 
Sbjct: 743 GMLPSNHVMHPVLK----TANEIHWRWHVFMQVTFAKWSDSGVSKTINMPSNATKEDVNG 798

Query: 888 IYRQAWLMG-LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            YR AW +G    T Y     A  V      GV+GK  A
Sbjct: 799 AYRLAWALGAFGITVYRDKSKAVQV---IYTGVEGKGKA 834


>gi|87198299|ref|YP_495556.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133980|gb|ABD24722.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 667

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 219/680 (32%), Positives = 325/680 (47%), Gaps = 106/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    + ++ A   Y+ +S 
Sbjct: 80  RDVNLTDFGKDTLDDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLYDYISK 130

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 131 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVATWNENVWLASRGGGIGTYWGKVR 190

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 191 GIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEIRKP 249

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V   A + L SP + S                    
Sbjct: 250 SGDFNRKALNLHHGVLLTDEFMEAVRDGAEFHLRSPKDGS-------------------- 289

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V   + A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 290 -------VRSTVDARSLFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 342

Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      ++++ DK    +   +R LDNV    I
Sbjct: 343 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---DEWNGDK--RFVEDVLRFLDNVLQDYI 397

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++G+G+MGF S L    I + S  A     +  + ++  A  
Sbjct: 398 DRAPDEMARAKYSAARERSVGMGVMGFHSFLQKKGIAFESAMAKAWNLKMFKHVAAKADE 457

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LAQERGA                          D   M    R             
Sbjct: 458 ASILLAQERGA------------------------CPDAAEMGVMQRF------------ 481

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L  +  
Sbjct: 482 ----SCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLQKLLADKSK 537

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               + + +  H GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQSLNL
Sbjct: 538 DSTNVWNSILEHGGSVQHLDFLSVEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNL 597

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           Y+     K  L  ++ QAW  G+K+ YYLRS+   SV+++   G  G + A    D  + 
Sbjct: 598 YIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTAE 647

Query: 935 THSLGIPSSCTSDTECEVCQ 954
              + + ++ T   EC  CQ
Sbjct: 648 APKIELATAETDYEECLACQ 667


>gi|326386065|ref|ZP_08207689.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209290|gb|EGD60083.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 685

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 221/681 (32%), Positives = 326/681 (47%), Gaps = 108/681 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A    +    A   Y+ +S 
Sbjct: 98  RDALLTAFGKETLDDRYLLPG-----ETYQDLFARVADAYA----DDAGHAQRLYDYISR 148

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 149 LWFMPATPVLSNGGTGRGLPISCYLNSVEDSLEGIVATWNENVWLAARGGGIGTYWGKVR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 209 GIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 267

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V     + L SP + S                    
Sbjct: 268 SGDFNRKALNLHHGVLLTDEFMQAVRDGTEFDLKSPKDGS-------------------- 307

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V  +++A AL++K++ +   TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 308 -------VRGRLNARALFQKLVEVRLATGEPYIVFSDTVNRTMPKHHRDLGLMVSTSNLC 360

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL       ++  DKL   I   +R LDNV    I
Sbjct: 361 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---EEWHEDKL--FIEDVLRFLDNVLQDFI 415

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     + +AK S    R++G+G+MGF S L    I + S  A     +    I+  A  
Sbjct: 416 ERAPDEMARAKYSAARERSVGMGVMGFHSFLQKKSIAFESAMAKAWNLKMFRHIAARADE 475

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LAQERG          D GV                                    
Sbjct: 476 ASLLLAQERGPCPDAA----DMGV------------------------------------ 495

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            M+  +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   LK++ 
Sbjct: 496 -MQRFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLKEKS 554

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                + + +    GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 555 KDSTNVWNSILERGGSVQHLDFLTPEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLN 614

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           LY+     K  L  ++ QAW  G+K+ YYLRS+   SV+++   G  G + A    D   
Sbjct: 615 LYIPADVDKWDLLMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTP 664

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
           +   + + +  T   EC  CQ
Sbjct: 665 AAPVIELEARQTDYEECLACQ 685


>gi|58617310|ref|YP_196509.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Gardel]
 gi|58416922|emb|CAI28035.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 595

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 211/646 (32%), Positives = 307/646 (47%), Gaps = 101/646 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++   A    +  + A   Y+
Sbjct: 6   VDYERDNNLTVFGKAVLSDRYLL-----ENEDYQQLFVRISEYYA----DNSEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + D FMK V  +A W L SP + S               
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQS--------------- 220

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
                       V   + A  +W K+LT   ETG P+I F D  N   P+ +  +   + 
Sbjct: 221 ------------VIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLCTEITL +     +   TA+C L S+NL    H+ +N+         I   +R LD
Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEHWKDNEL-------FIEDVMRFLD 321

Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           NV    I+   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    
Sbjct: 322 NVLTDFIEKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSH 381

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I  HA +AS  +A E+G     K    D GV                             
Sbjct: 382 IKKHADAASYRIAIEKGPCPDAK----DAGVME--------------------------- 410

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                    R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL  
Sbjct: 411 ---------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQK 461

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L  +   ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I 
Sbjct: 462 LLILKGENNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYIC 521

Query: 869 QAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QAQS+N++L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 522 QAQSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADK 567


>gi|296116312|ref|ZP_06834928.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977131|gb|EFG83893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 620

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 221/680 (32%), Positives = 317/680 (46%), Gaps = 96/680 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L +RY L   G      Q  F RVA      E   ++     Y+ +S 
Sbjct: 23  RDALLTAFGKATLDNRYLLPGEGY-----QDLFGRVASYYGADEGHAQR----LYDYISR 73

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 74  HWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWGNLR 133

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G ++ G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+ 
Sbjct: 134 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 192

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    I D FM+ V  +  W L SP + S +                 
Sbjct: 193 TGGDPNRKALNLHHGILISDAFMRAVAADEEWALLSPKDGSHI----------------- 235

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                     RK+SA +LW ++LT   E G P+I + D  N   PQ H   G+ V +SNL
Sbjct: 236 ----------RKVSARSLWIRILTARMEQGEPYIIYSDHVNNARPQHHKLAGLEVKTSNL 285

Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           C EITL +       E TAVC L S+N L  +   + D   +   +    RVL + ID  
Sbjct: 286 CAEITLPTGMDHHGKERTAVCCLSSLN-LETWDEWKDDPQFIEDVMLFLDRVLQDFIDRA 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +E+AK +    R++GLG+MGF S L   +IP+ S  A        E I   A +AS 
Sbjct: 345 PDDMERAKYAAARERSVGLGVMGFHSFLQAKNIPFESVIAKVWNKRIFEHIRKQADAASH 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LAQ                     S+G   +  +   M R                   
Sbjct: 405 KLAQ---------------------SLGACPDAAEYGVMERF------------------ 425

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L Q+    +
Sbjct: 426 -SNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTQKGRNTD 484

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I QAQS+NL+L 
Sbjct: 485 DVWSSITLNKGSVQHLDFLDQQEKDVFKTAFELDQRWVIEHAADRAPFICQAQSINLFLP 544

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV---TDPNSS 934
               K+ L  I+  AW  G+K+ YY RS S    +  +    DGK+    +   TD    
Sbjct: 545 ANVHKRDLHQIHYMAWKRGVKSLYYCRSLSVQRADAVS----DGKVKNDIMQKETDEALP 600

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                 P+S T   EC  CQ
Sbjct: 601 PIPPAAPASSTDYEECLACQ 620


>gi|85710101|ref|ZP_01041166.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
 gi|85688811|gb|EAQ28815.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
          Length = 669

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 221/681 (32%), Positives = 328/681 (48%), Gaps = 108/681 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A    + ++ A   Y+ +S+
Sbjct: 82  RDANLTEFGKETLTDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLYDYISN 132

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 133 LWFMPATPVLSNGGTSRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYWGNVR 192

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 193 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEIRKP 251

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V   A + L SP                        
Sbjct: 252 SGDFNRKALNLHHGVLLTDEFMEAVRDGADFDLKSP------------------------ 287

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
              GE++    ++A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 288 -KTGEVR--GTVNARSLFQKLVECRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 344

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      +++  DK    I   +R LDNV    I
Sbjct: 345 SEITLPTGIDHLGNDRTAVCCLSSLNLEKW---DEWSTDK--QFIEDVMRFLDNVLQDYI 399

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +A+ S    R++GLG+MGF S L    + + S  A  +  +  + I   A  
Sbjct: 400 DRAPDEMARARYSAERERSVGLGVMGFHSFLQQKGLGFESAMAKALNLKMFKHIQAKASE 459

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LAQERG               P      +       AM R S              
Sbjct: 460 ASMLLAQERG---------------PCPDAAEMG------AMERFS-------------- 484

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                 C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++ 
Sbjct: 485 ------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKS 538

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                + + +    GS+ +++ + D+ K    T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 539 KNSTNVWNSILERGGSVQHLDFLTDEEKASFKTSFEIDQRWLLEFAADRAPYIDQAQSLN 598

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K  L  ++ QAW  G+K+ YYLRS+   SV+++   G  G + A    D  +
Sbjct: 599 LFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRA---GFAGGVEA----DNTA 648

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                 + +  T   EC  CQ
Sbjct: 649 DAAKFELAAEQTDYEECLSCQ 669


>gi|330994650|ref|ZP_08318573.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758291|gb|EGG74812.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 599

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 215/685 (31%), Positives = 313/685 (45%), Gaps = 101/685 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L +RY L       E  Q  F RVA          ++     Y+
Sbjct: 1   MDHSRDALLTAFGKATLDNRYLLPG-----ESYQDLFGRVASYYGADAAHAQR----LYD 51

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 52  YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 111

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++ G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 112 GNLRSIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 170

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    +PD FM+ V  +  W L SP + +               
Sbjct: 171 LRRPTGGDPNRKALNLHHGVLVPDAFMRAVADDDEWALLSPKDNT--------------- 215

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580
                       V RK+SA ALW ++LT   E G P+I F D  N   P+ H   G+ V 
Sbjct: 216 ------------VIRKVSARALWIRILTARMEQGEPYIIFSDHVNNARPEHHKLAGLEVK 263

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC EITL +       E TAVC L S+NL         ++      I   +  LDNV
Sbjct: 264 TSNLCAEITLPTGMDQHGRERTAVCCLSSLNL-----ETWEEWKDNPQFIEDVMLFLDNV 318

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     +E+A+ +    R++GLG+MGF S L   ++P+ S  A        + I 
Sbjct: 319 LQDFIDRAPDDMERARYAAMRERSVGLGVMGFHSFLQANNVPFESVVAKGWNRRIFKHIR 378

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A +AS +LA+ERG          D GV                               
Sbjct: 379 AQADAASRKLAEERGPCPDAA----DYGVME----------------------------- 405

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L
Sbjct: 406 -------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLL 458

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R      + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  ++ QA
Sbjct: 459 TERGQNTSEVWSSITLNKGSVQHLDFLTRQEKDVFKTAFELDQRWVIEHAADRAPYVCQA 518

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K+ L  I+  AW  G+K+ YY RS S    +  +    DG+       
Sbjct: 519 QSINIFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSIQRADAVS----DGQEKRDLSH 574

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
                      P++ T   EC  CQ
Sbjct: 575 REGEDAAGTAGPATTTDYEECLACQ 599


>gi|57239292|ref|YP_180428.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579256|ref|YP_197468.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161371|emb|CAH58294.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417882|emb|CAI27086.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 595

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 308/644 (47%), Gaps = 97/644 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++   A    +  + A   Y+
Sbjct: 6   VDYERDNNLTVFGKAVLSDRYLL-----ENEDYQQLFVRISEYYA----DNSEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + D FMK V  +A W L SP + S               
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQS--------------- 220

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
                       V   + A  +W K+LT   ETG P+I F D  N   P+ +  +   + 
Sbjct: 221 ------------VIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLCTEITL +     +   TA+C L S+NL  +    Q+  ++L   I   +R LDNV
Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYY---EQWKDNEL--FIEDVMRFLDNV 323

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I 
Sbjct: 324 LTDFIEKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATMWNKKIFSHIK 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            HA +AS  +A E+G     K    D GV                               
Sbjct: 384 KHADAASYRIAIEKGPCPDAK----DAGVME----------------------------- 410

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L
Sbjct: 411 -------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
             +   ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I QA
Sbjct: 464 ILKGENNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQA 523

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+N++L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 524 QSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADK 567


>gi|296536500|ref|ZP_06898591.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
 gi|296263179|gb|EFH09713.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
          Length = 633

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 224/714 (31%), Positives = 326/714 (45%), Gaps = 117/714 (16%)

Query: 276 FDLVYLANDLKY----------ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            D V+LA+D++            RD      G   L DRY +       E  Q  F RVA
Sbjct: 2   LDAVHLADDIQLAGHGQVRVDRSRDALLTDFGKATLDDRYLMPG-----ESYQDLFARVA 56

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                  ++    A   Y+ +S   FM +TP L N GT      SCFL    D L GI  
Sbjct: 57  SAY----SDDSAHAQRIYDYISRLWFMPATPVLSNGGTTRGLPISCFLNEANDSLNGIVD 112

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              EN  LA   GG+G+ W  +R +G  + G NGK+ G+IPF++V +   +A++QG  R+
Sbjct: 113 LWNENVWLASKGGGIGSYWGNLRSIGEKV-GQNGKTSGIIPFIRVMDSLTLAISQGSLRR 171

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           G+   YL   H ++EEF+DLR+ TG D  R+  +++    +PD FM+ V  +  W L SP
Sbjct: 172 GSAAVYLPVSHPEIEEFIDLRRPTGGDPNRKALNLHHGILVPDAFMRAVEADEEWALTSP 231

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            + +                           V RK+SA  LW ++L    E G P+I + 
Sbjct: 232 KDGA---------------------------VVRKVSARGLWIRILMARIEQGEPYIIYS 264

Query: 565 DPCNIRSP--QQHVGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQF 616
           D  N   P  Q+  G+ V +SNLC+EITL +       E TAVC L S+NL        F
Sbjct: 265 DAVNNARPEHQKLAGLEVKTSNLCSEITLPTGRDQHGKERTAVCCLSSLNL-----ETWF 319

Query: 617 DYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           ++   A  I   +R LDNV    ID    ++ +AK S    R++GLG+MGF S L   ++
Sbjct: 320 EWKDDARFIPDVMRFLDNVLQGFIDDAPDSMARAKYSAMRERSVGLGVMGFHSFLQAQNV 379

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A        + I   A  AS  LA+ERG                    G +   
Sbjct: 380 PFESVIAKVWNKRMFKHIREQADLASRLLAEERGPCPDAA------------EYGFME-- 425

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYV 791
                                     R SN MAIAPTA+I+ IC G S  I+P   N+Y 
Sbjct: 426 --------------------------RFSNKMAIAPTASISIICGGASPGIEPIAANVYN 459

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
              +SG F V N +L   L +    D+   + +  + GS+ +++ + +  K +  TAFE+
Sbjct: 460 HKTLSGSFIVRNPYLKKVLAKHGRDDDETWTTITVNKGSVSHLDFLDEQEKAVFKTAFEL 519

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRS----R 906
           D  W++E A+ R  +I Q+QS+NL+L     K+ L  I+ QAW  G+K+ YY RS    R
Sbjct: 520 DQRWVVEHAADRTPYICQSQSVNLFLPADVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQR 579

Query: 907 SATSVEKSTLKGVDG-----KLNAVPVTDPNSSTHSL-GIPSSCTSDTECEVCQ 954
           +    EK  ++   G      ++AV    P     ++ G   + T   EC  CQ
Sbjct: 580 ADAISEKVAVQPELGFAAATSIDAVLPVPPAPRVRAVAGEGGNGTDYEECLACQ 633


>gi|262277046|ref|ZP_06054839.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
 gi|262224149|gb|EEY74608.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
          Length = 646

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 212/639 (33%), Positives = 300/639 (46%), Gaps = 97/639 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G+  L DRY      S  E  Q  F RVA   A    +    A   YN +S 
Sbjct: 60  RDANLTDFGMATLTDRYL-----SENESYQDLFARVAATYA----DDNLHAQRLYNYISK 110

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N+GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 111 LWFMPATPVLSNAGTSRGLPISCFLNEAADSLDGIVNLWSENVWLAAKGGGIGSYWGNLR 170

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+++R+ 
Sbjct: 171 AIGEKV-GRVGKTSGIIPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIEMRRP 229

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  RR  +++    + D FM+ V  +A W L SP + +                   
Sbjct: 230 TGGDPNRRALNLHHGVLVTDAFMRAVETDADWPLKSPYDGT------------------- 270

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                   V   I A  LW ++LT   ETG P+I + D  N   PQ H   G+ V +SNL
Sbjct: 271 --------VQSTIKARNLWIRLLTARVETGEPYIVYIDTVNRMIPQHHKLAGLTVKTSNL 322

Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C+EITL +       + TAVC L S+NL      N  ++      I   +R+LDNV    
Sbjct: 323 CSEITLPTGIDKYGKDRTAVCCLSSLNL-----ENYDEWKDEPGFIEDIMRMLDNVLSDF 377

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+    + + AK S    R++GLG+MGF S +    IP  S  A     +  +FI     
Sbjct: 378 INRAPESFKDAKYSAMRERSVGLGVMGFHSYMQRHMIPIESVMAKVWNKKMFQFIDKEVN 437

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS +LA+ERG          D   + I+                               
Sbjct: 438 AASKKLAEERGPCP-------DAAEYGINE------------------------------ 460

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  I+P   N Y    +SG F V N +L   L++ +
Sbjct: 461 ---RFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKKILQKYN 517

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                + S +  + GS+ +++ +  D K +  TAFEID  WLI+ ++ R  +I QAQSLN
Sbjct: 518 QDTNEVWSSITTNQGSVEHLDFLSQDEKDVFKTAFEIDQRWLIDHSADRTPYISQAQSLN 577

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +++     KK L  I+ QAW  GLK+ YY RS+S    E
Sbjct: 578 VFIPADIHKKDLHQIHYQAWKKGLKSLYYCRSKSIQRAE 616


>gi|146304479|ref|YP_001191795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
 gi|145702729|gb|ABP95871.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
          Length = 823

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 200/699 (28%), Positives = 347/699 (49%), Gaps = 69/699 (9%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK---EKRAVEFY 343
           +D    Y  L++L  RY L    +   IE PQ  F RVA  LA  E +K   +  A +FY
Sbjct: 109 KDLLISYNALKVLEARYLLKDPETLRYIETPQMMFKRVASYLAKVEQDKNVQQDAAQKFY 168

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSG 398
            ++SS  F+ +TP L NSGTR   LS+CF+  V D +      GI+  L+  A++ +  G
Sbjct: 169 EIMSSLKFVPNTPALMNSGTRLGILSACFVLPVRDSMTSPSGDGIYDTLRAMALVHQQGG 228

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G D++ +R  G  +  T G + G + F+K+ + +   V QGGKR+GA    +  WH D
Sbjct: 229 GTGFDFSELRPKGDVVASTAGVASGPVSFMKIFDVSTDVVKQGGKRRGANMGVMHAWHAD 288

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------------- 504
           +E+F+  +     D  +  + N +  + D FM+ V +     L +P              
Sbjct: 289 IEDFIHAKTGELKD-VQLQNFNISVGVYDYFMEAVMKEEQVPLITPRKTKIPGTDHEYYI 347

Query: 505 -----------------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
                             E+ +   +Y  E +I   +        E  V R ++A  L+ 
Sbjct: 348 VKARNYMREEWVQEEILRELEEKGSVYLDESKIITVDEALAIAEKEGAVIRWVNARTLFE 407

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +++   +++G P + F D  N R P  ++G + ++N C E  L         CNLGS+N 
Sbjct: 408 QIVKGAWDSGDPGLLFIDEINRRHPTWYLGKIQATNPCGEEPLLPWES----CNLGSLN- 462

Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           L  F   +      D+D LA+TIR AVR LDNV+D N + + + +++    R +GLG+MG
Sbjct: 463 LEKFVKERDGTPYIDWDDLANTIRYAVRFLDNVVDANRYPLPQIEQATKRTRKVGLGVMG 522

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK----GSLWDQ 718
              AL  L IPY S +AV ++    +FI +HA+  S+ELA+E+G++ ++       +W+ 
Sbjct: 523 LARALIKLGIPYDSVDAVYVSYYLAKFIYYHAMKTSIELAKEKGSFPAYDPVRYKDVWES 582

Query: 719 GVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
               +D I  ++ +R + +      M+   +L    LK      G+RN+  +++APT TI
Sbjct: 583 AR-ELDEILTISGIRGKPSDYAKKLMSEAEKLDVTVLKDMRLKYGLRNATVVSVAPTGTI 641

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G S SI+P +   ++++   G F  ++   +  L++ +L    ++  +    G +G
Sbjct: 642 SIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLEYLRKYELDTPDVVKKIA-ETGEVG 700

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +   +P  ++K+  TA E++PM+ +   +  Q+W D   ++++NL  +EP+   ++ +Y 
Sbjct: 701 DNPFVPKTIRKLFRTAHEVEPMYHVLHQAAWQQWNDSGTSKTINLRSEEPA-DTVEKVYM 759

Query: 891 QAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            AW +G+K  T Y  +S+S   +     K  + K  A+P
Sbjct: 760 TAWKLGIKGITVYRDKSKSQQVIYFGLKKEREEKSKALP 798


>gi|94495784|ref|ZP_01302363.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
 gi|94424476|gb|EAT09498.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
          Length = 626

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 313/645 (48%), Gaps = 101/645 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA       ++    A   Y+ +S 
Sbjct: 40  RDALLTEFGKETLNDRYLLPG-----ESYQDLFARVAAAY----SDDADHAQRVYDYISK 90

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 91  LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 150

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 151 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 209

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V   A + L SP +                     Q
Sbjct: 210 SGDFNRKALNLHHGVLLTDEFMEAVRDGADFNLRSPKD---------------------Q 248

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
           + RG       ++A AL++K++ +   TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 249 SVRG------TVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRELGLKVSTSNLC 302

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL     +   D+   A  I   +R LDNV    I
Sbjct: 303 SEITLPTGRDHLGNDRTAVCCLSSMNL--ETWDEWKDHPTFAEDI---MRFLDNVLQDYI 357

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++GLG+MGF S L   +IP+    A        + I+     
Sbjct: 358 DRAPPEMARAKYSAMRERSVGLGVMGFHSFLQARNIPFEGAMAKSWNLRIFKQINAKVNE 417

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LAQERG          DQGV                                    
Sbjct: 418 ASMLLAQERGPCPDAA----DQGV------------------------------------ 437

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L  + 
Sbjct: 438 -MERFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKA 496

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
               A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 497 KDSTAVWNSILERGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLN 556

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           L++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G
Sbjct: 557 LFIPADVEKWDLLMLHFRAWELGIKSLYYLRSK---SVQRAGFAG 598


>gi|209966732|ref|YP_002299647.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209960198|gb|ACJ00835.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodospirillum
           centenum SW]
          Length = 621

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 219/685 (31%), Positives = 306/685 (44%), Gaps = 112/685 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 34  VDHSRDNLLTAFGKATLDDRYLLPG-----ESYQDLFARVASYYA----DDTAHAQRLYD 84

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W
Sbjct: 85  YISRLWFMPATPVLSNGGTDRGLPISCFLNEASDSLEGIVGLWNENVWLAAKGGGIGSYW 144

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 145 GNLRSIGERVKG-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAACYLPVWHPEIEEFVE 203

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    IPD FM+ V  +  W L SP + + L             
Sbjct: 204 MRRPTGGDPNRKALNLHHGVVIPDAFMRAVEADEDWKLVSPKDGATL------------- 250

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580
                         R +SA  LW ++LT   ETG P++ F D  N   P+ H   G+ V 
Sbjct: 251 --------------RVVSARQLWIRILTARVETGEPYLLFIDHVNRAIPEHHKLAGLTVK 296

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC EITL +       + TAVC L S+NL         ++    + I   +R LDNV
Sbjct: 297 MSNLCAEITLPTGLDPWGQQRTAVCCLSSLNL-----ETFLEWQDHPTFIEDTLRFLDNV 351

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I      + +AK +    R++GLG+MGF S L    +P     A          I 
Sbjct: 352 LTDFIAKAPDEMARAKYAAMRERSVGLGVMGFHSFLQGQGVPIEGVMAKVWNKRIFAHIK 411

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A +AS+ L  ERG                           D        R        
Sbjct: 412 RQADAASLALGAERGP------------------------CPDAAEYGGKERF------- 440

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                    SN +AIAPTA+I+ IC G S  I+P   N Y    +SG ++V N +L   L
Sbjct: 441 ---------SNKIAIAPTASISIICGGASPGIEPIAANAYTHKTLSGSWSVRNKYLEAVL 491

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++    DE   S +  + GS+ +++ +  D K +  TAFEID  WLIE A+ R  +I Q+
Sbjct: 492 ERHGRNDEDTWSAITLNGGSVQHLDFLSQDEKDLFRTAFEIDQRWLIEHAADRTPFICQS 551

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN++L     K+ L  I+ QAW  G+K+ YYLRS S    E  +      K    P T
Sbjct: 552 QSLNVFLPADVHKRDLHQIHFQAWKKGVKSLYYLRSLSVQRAESESRPAAAAK----PDT 607

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
            P  + +            EC  CQ
Sbjct: 608 PPEPAKYE-----------ECLACQ 621


>gi|260752514|ref|YP_003225407.1| ribonucleotide-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258551877|gb|ACV74823.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 613

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 209/633 (33%), Positives = 306/633 (48%), Gaps = 96/633 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ +S 
Sbjct: 28  RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W  VR
Sbjct: 79  LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIIDIWNENVWLASRGGGIGTYWGNVR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V     + L SP + S                    
Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGS-------------------- 237

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585
             RGE      + A +L++K++    +TG P+I F D  N   P+ H  +   V SSNLC
Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL+     +Q+  +K    I   +R LDNV    I
Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  A  
Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANE 405

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LA+ERGA         D GV                                    
Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ +  
Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL
Sbjct: 486 DSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++     K  L  ++ +AW +G+K+ YYLRS+S
Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578


>gi|85375154|ref|YP_459216.1| ribonucleotide-diphosphate reductase subunit alpha [Erythrobacter
           litoralis HTCC2594]
 gi|84788237|gb|ABC64419.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 681

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 212/646 (32%), Positives = 318/646 (49%), Gaps = 103/646 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L   G +    Q  F RVA   A    + ++ A   Y+ +S 
Sbjct: 91  RDVNLTEFGKETLIDRYLLP--GEKF---QDLFARVADAYA----DDQEHAQRLYDYISR 141

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 142 LWFMPATPVLSNGGTNRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYWGNVR 201

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 202 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDIHHPEIEEFLEIRKP 260

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    I D FM+ V + A + L SP + S                    
Sbjct: 261 SGDFNRKALNLHHGVLITDAFMEAVREGAEFDLKSPKDGS-------------------- 300

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V   + A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 301 -------VRGTVDARSLFQKLVETRLATGEPYIVFADTVNRMMPKHHRDLGLKVSTSNLC 353

Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNV---- 635
           +EITL +      ++ TAVC L S+NL       ++D ++     I   +R LDNV    
Sbjct: 354 SEITLPTGVDHLGNDRTAVCCLSSLNL------EKWDEWNGEKDFIEDVMRFLDNVLQDY 407

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID     + +AK S    R++G+G+MGF S L   ++P   P A    D+  + I   A 
Sbjct: 408 IDRAPDEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNDKMFKQIHAKAN 467

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ LA+ERG                        +  +  AM R S             
Sbjct: 468 EASMLLAKERGP---------------------CPDAEEMGAMERFS------------- 493

Query: 756 IGMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
                  C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   LK++
Sbjct: 494 -------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLKKK 546

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                A+ + +    GS+ +++ +  + K +  T+FEID  +L+E A+ R  +IDQAQSL
Sbjct: 547 SKDSTAVWNSILERGGSVAHLDFLTPEEKAVFKTSFEIDQRYLLEFAADRAPYIDQAQSL 606

Query: 874 NLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           NL++     K  L  ++ QAW  G+K+ YYLRS+   SV+++   G
Sbjct: 607 NLFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSK---SVQRAGFAG 649


>gi|83592780|ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575694|gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 629

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 219/663 (33%), Positives = 317/663 (47%), Gaps = 102/663 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L+  RD      G  +L DRY L   G      Q  F RV+   A    +    A   Y+
Sbjct: 44  LERSRDDKLNAFGKAMLGDRYLLPGEGI-----QDMFARVSCAFA----DNAAHAQRLYD 94

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL TVPD L GI     EN  LA   GG+G  W
Sbjct: 95  AMSKLWFMPATPILSNGGTQRGLPISCFLNTVPDSLEGIVAIWNENVDLASNGGGIGTYW 154

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G NG + G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 155 GGVRSIGEAVKG-NGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 213

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++ A  I D FM+ V  +  + L SP                    
Sbjct: 214 IRKASGDFNRKSLNLHHAINITDDFMEAVRDDRQFALKSPKS------------------ 255

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHS 581
                  GE  V R + A  LW+K+L    +TG P++ F D  N   P  Q+ +G+ V S
Sbjct: 256 -------GE--VLRSVGARQLWQKILETRLQTGEPYLLFTDTVNRALPKHQRDLGLRVSS 306

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC EITL +       E TAVC L S+N+         +++     I   +R LDNV 
Sbjct: 307 SNLCAEITLPTGRDHRGQERTAVCCLSSLNI-----ETWDEWENAPGFIEDVLRFLDNVL 361

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              I+     +E+A  +    R++GLG+MGF S L    IP+ S  A          I  
Sbjct: 362 SHFIETAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPFESALAKSWNLRLFRKIRR 421

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +ASV+LA ERGA                                       D  ++ 
Sbjct: 422 DADAASVDLADERGACP-------------------------------------DAAERG 444

Query: 753 VKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +K    R S  +AIAPTA+I+ IC G S  ++P   N+Y    +SG F+V N  L   L 
Sbjct: 445 MKA---RFSAKLAIAPTASISIICGGTSACVEPIPANVYTHKTLSGSFSVRNPHLARRLA 501

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            + L        +  H+GS+ ++E + DD K +  TAFEID  W+I+ A+ R  +I Q+Q
Sbjct: 502 DKGLDTAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLAADRAPFICQSQ 561

Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD---GKLNAVP 927
           S+NLYL   + K  L  ++  AW  GLK+ YY RS+   SV+++   G +   G+ ++ P
Sbjct: 562 SINLYLPADADKWDLHMLHWTAWRRGLKSLYYCRSK---SVQRAAFVGREKPSGETSSAP 618

Query: 928 VTD 930
             D
Sbjct: 619 RAD 621


>gi|329847262|ref|ZP_08262290.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
 gi|328842325|gb|EGF91894.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
          Length = 589

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 213/680 (31%), Positives = 321/680 (47%), Gaps = 111/680 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY +       E  Q  F RVA   A    +  + A   Y+ +S 
Sbjct: 7   RDALLTDFGKTTLDDRYLMPG-----ESYQDMFARVATTYA----DDSEHAQRIYDYISR 57

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  VPD L GI G   EN  LA   GG+G  W  VR
Sbjct: 58  LWFMPATPVLSNGGASRGLPISCFLNAVPDSLEGIVGTWNENVALASNGGGIGTYWGRVR 117

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL++RK 
Sbjct: 118 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVFHPEIEEFLEIRKP 176

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM+ V     + L SP                  +N E  
Sbjct: 177 SGDFNRKSLNLHHGIGITDEFMEAVRDGTPFGLRSP------------------KNDE-- 216

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
                  V R I A  LW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 217 -------VVRYIDARNLWQKILEIRLQTGEPYLIFNDTINRSMPQHQRELGLKVTQSNLC 269

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--I 638
           +EI L++       + TAVC L S+N     A    ++      I   +R LDNV++  I
Sbjct: 270 SEIMLHTGPDHRGQDRTAVCCLSSVN-----AETFMEWRDAPGFIEDVMRFLDNVLEDFI 324

Query: 639 NC--HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            C   +++ A  S    R++GLGLMGF S L    + + S  A        + +   A  
Sbjct: 325 QCAPGSMDSAVYSALCERSVGLGLMGFHSFLQAQGVAFESAMAKSWNMRLFKHLRREADK 384

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++L QERG                                      P  + ++R   +
Sbjct: 385 ASIKLGQERG--------------------------------------PCRDAEER--GV 404

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L+ + +
Sbjct: 405 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLETKGI 464

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               +  ++  H+GS+ +++ + +D K +  TAFEID  W++E A+ R   I Q+QSLN+
Sbjct: 465 NTAEVWDNIVQHEGSVQHLDELSEDEKFVFKTAFEIDQRWVVELAADRTPEICQSQSLNI 524

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  GLK+ YYLRS+   SV++++  G + K     ++ P   
Sbjct: 525 FLPGDVDKWDLHMLHWTAWEQGLKSMYYLRSK---SVQRASHAGSETKEIVEKMSTPK-- 579

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                     T   EC  CQ
Sbjct: 580 ----------TDYEECLACQ 589


>gi|298674718|ref|YP_003726468.1| ribonucleoside-diphosphate reductase [Methanohalobium evestigatum
           Z-7303]
 gi|298287706|gb|ADI73672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalobium evestigatum Z-7303]
          Length = 695

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 190/647 (29%), Positives = 305/647 (47%), Gaps = 91/647 (14%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR--------AV 340
           D       +++L  RY L   NG+ +E P   F RVA  ++      +KR          
Sbjct: 106 DLKLSVNAIRVLERRYLLKGENGNPVETPSEMFERVANSVS----SIDKRYGYNPYDSKA 161

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EFY ++S+  F+ ++PTL N+GT   QLS+CF+  V D +  IF AL   +++ K  GG 
Sbjct: 162 EFYRMMSNLEFLPNSPTLMNAGTELGQLSACFVLPVEDSMKDIFEALTNMSLIHKSGGGT 221

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G  +  T G + G + F+ + +     + QGGKR+GA    L   H D+ 
Sbjct: 222 GFSFSKLRPNGDIVKSTKGVASGPVSFMSIFDQATEVIKQGGKRRGANMGILRIDHPDII 281

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF++ ++  G       + N +  + D FMK V  ++ + L +P          GK  E 
Sbjct: 282 EFINSKEKEG----YLDNFNISVGVTDEFMKAVQSDSKYDLINPRT--------GKTTE- 328

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                             K+ A  ++  + TM + TG P + F D  N R P  HV  + 
Sbjct: 329 ------------------KLRARDIFDLITTMAWRTGDPGMIFLDEINRRHPVSHVRTIE 370

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C E+ L         CNLGSINL     N+  +++KL +   + +  LDNVID N 
Sbjct: 371 STNPCGEVPLLPYES----CNLGSINLSKMVKNDTINWEKLKNNTHSGIHFLDNVIDANK 426

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +  +    +R IGLG+MG       L+IPY S EA+E A+  M+FI+  ++  SVE
Sbjct: 427 YPLNEIDRETKNNRKIGLGVMGLAEMFAKLNIPYNSEEAIETAENIMKFINEESVKKSVE 486

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           L ++RG++ +FKGS W++                                   K   MRN
Sbjct: 487 LGEKRGSFPNFKGSQWEK-----------------------------------KYSSMRN 511

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           +    IAPT TI+ I   S  I+P +   +V++ M+     VN    N  K+R+ + + +
Sbjct: 512 ATVNTIAPTGTISIIANTSSGIEPIFALSFVRNVMATQLLEVNPVFENVAKERNFYSKDL 571

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           + D+    GSI N++++P D++ +  T+ +IDP W +   +  QK++D + S  + L  P
Sbjct: 572 MMDIS-KTGSIQNLKQVPKDVRDLFVTSLDIDPEWHVRMQAAFQKYVDNSVSKTVNL--P 628

Query: 881 SGKKLD---FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGK 922
               LD    IY  A+ +  K  T Y   S+    +E   LK   G+
Sbjct: 629 EKATLDDVKRIYMMAYKLNCKGITIYRYGSKENQVLELGGLKKEKGE 675



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 10/105 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + KR+G    FD  KI++AI KA  +V E  G        D+ + ++ Q +  L    K+
Sbjct: 4   IKKRDGRTVDFDSDKITQAIHKAIHSVNENDG--------DLARKMSYQVIDNLENRFKN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +ED+QD VE  L+++G+ ++ + Y+LYR +RS+VR  + +
Sbjct: 56  T-IPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRKRSEVRETKKY 99


>gi|189184363|ref|YP_001938148.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181134|dbj|BAG40914.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 604

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 213/665 (32%), Positives = 317/665 (47%), Gaps = 98/665 (14%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L DRY L     + E  Q   +R+A   A    + +  A   Y+ +S   F+ +TP L N
Sbjct: 27  LADRYLL-----KGETFQDLCVRIASYYA----DNKSHAQRLYDYMSQHWFLPATPILSN 77

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            GT      SCF+  V D LYGI     EN  LA   GG+G+ W  VR +   I G NG 
Sbjct: 78  GGTNRGLAISCFVNEVEDSLYGIVNTWIENVWLASRGGGIGSYWGNVRSINEKI-GENGY 136

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDM 479
           S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R++T GD  R++ ++
Sbjct: 137 SSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEIEEFIDIRRHTGGDSNRKSLNI 196

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    I D FM  V +N  W L SP                 Y++          ++   
Sbjct: 197 HHGIVISDQFMHAVEKNESWNLISP-----------------YDD----------RIINT 229

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNSSSE- 595
           + A  LW K+LT   ETG P+I F D  N   P+ H  +G+ V +SNLC+EITL +  + 
Sbjct: 230 VKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKLGLKVKTSNLCSEITLPTGRDY 289

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                TAVC L S+N L +F   Q +   +   IR    VL++ I+    T+  AK S  
Sbjct: 290 TNNIRTAVCCLSSLN-LEYFGLWQSNEHFIPDIIRFLDNVLEDFINKAPDTMSNAKYSAM 348

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ERGA    
Sbjct: 349 HERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKERGA---- 404

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                                 D    N   R  +                  A+APTA+
Sbjct: 405 --------------------CIDAQKCNIQERFSYK----------------TAVAPTAS 428

Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ + S +  H+GS
Sbjct: 429 ISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQVWSSIATHEGS 488

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIY 889
           + ++  + D  K+++ TA+EID  WLIE A+ R ++I Q+QSLN++L     K+ L  I+
Sbjct: 489 VQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQSQSLNIFLPGNCSKQLLHDIH 548

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             AW   +K+ YY RS S    EK +        + V + +    T    + +S  +D E
Sbjct: 549 FDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTIDELAKLTDKEQLATS-NNDDE 599

Query: 950 CEVCQ 954
           C  CQ
Sbjct: 600 CLACQ 604


>gi|148284014|ref|YP_001248104.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Boryong]
 gi|146739453|emb|CAM79092.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 605

 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 212/665 (31%), Positives = 316/665 (47%), Gaps = 97/665 (14%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L DRY L     + E  Q   +R+A   A    + +  A   Y+ +S   F+ +TP L N
Sbjct: 27  LADRYLL-----KGETFQDLCVRIASYYA----DNKSHAQRLYDYMSQHWFLPATPILSN 77

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            GT      SCF+  V D L+GI     EN  LA   GG+G+ W  VR +   I G NG 
Sbjct: 78  GGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGGIGSYWGNVRSINEKI-GENGY 136

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDM 479
           S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R++T GD  R++ ++
Sbjct: 137 SSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPVSHPEIEEFIDIRRHTGGDSNRKSLNI 196

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    I D FM  V +N  W L SP                 Y+N          ++   
Sbjct: 197 HHGIVISDQFMHAVEKNESWNLISP-----------------YDN----------RIINT 229

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNSSSE- 595
           + A  LW K+LT   ETG P+I F D  N   P+ H  +G+ V +SNLC+EITL +  + 
Sbjct: 230 VKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKLGLKVKTSNLCSEITLPTGRDY 289

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                TAVC L S+N L +F   Q +   +   I+    VL++ I+   +T+  AK S  
Sbjct: 290 TNNIRTAVCCLSSLN-LEYFELWQSNEHFIPDIIKFLDNVLEDFINKAPNTMSNAKYSAM 348

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ERGA    
Sbjct: 349 HERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKERGA---- 404

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                                 D    N   R  +                  AIAPTA+
Sbjct: 405 --------------------CIDAQKCNIQERFSYK----------------TAIAPTAS 428

Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ + S +  H+GS
Sbjct: 429 ISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQVWSSIATHEGS 488

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIY 889
           + ++  + D  K+++ TA+EID  WLIE A+ R ++I Q+QSLN++L     K+ L  I+
Sbjct: 489 VQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQSQSLNIFLPGNCSKQLLHDIH 548

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             AW   +K+ YY RS S    EK +        + V   D  +        ++  +D E
Sbjct: 549 FDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTTIDELAKLTDKEQLATSNNDDE 600

Query: 950 CEVCQ 954
           C  CQ
Sbjct: 601 CLACQ 605


>gi|326403281|ref|YP_004283362.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
 gi|325050142|dbj|BAJ80480.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
          Length = 628

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 211/637 (33%), Positives = 303/637 (47%), Gaps = 103/637 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY +       E  Q  F RVA        +  + A   Y+ +S 
Sbjct: 30  RDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYDYISK 80

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 81  LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYWGNLR 140

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF+++R+ 
Sbjct: 141 SIGEKV-GQNGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIEIRRP 199

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + + +                 
Sbjct: 200 TGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV----------------- 242

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                     R +SA +LW ++LT   ETG P+I F D  N   P+ H   G+ V +SNL
Sbjct: 243 ----------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVKTSNL 292

Query: 585 CTEITLNS-----SSEETAVCNLGSINL---LAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           C EITL +       + TAVC L SINL   L    N QF        I   +R LDNV 
Sbjct: 293 CAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQF--------IEDVMRFLDNVL 344

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I  
Sbjct: 345 QDFIDSAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRA 404

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS +LA+ERG          + GV                                
Sbjct: 405 GADAASRKLAEERGPCPDAA----EYGVME------------------------------ 430

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R S+ MAIAPTA+I+ I G  S  I+P   N++++  +SG F+V N  L   L 
Sbjct: 431 ------RFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLA 484

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +   DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I Q+Q
Sbjct: 485 AKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQ 544

Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           S+N++L     K+ L  I+ QAW  G+K+ YY RS S
Sbjct: 545 SINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLS 581


>gi|148259751|ref|YP_001233878.1| ribonucleotide-diphosphate reductase subunit alpha [Acidiphilium
           cryptum JF-5]
 gi|146401432|gb|ABQ29959.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidiphilium
           cryptum JF-5]
          Length = 628

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 211/637 (33%), Positives = 303/637 (47%), Gaps = 103/637 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY +       E  Q  F RVA        +  + A   Y+ +S 
Sbjct: 30  RDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYDYISK 80

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 81  LWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYWGNLR 140

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF+++R+ 
Sbjct: 141 SIGEKV-GQNGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIEIRRP 199

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + + +                 
Sbjct: 200 TGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV----------------- 242

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                     R +SA +LW ++LT   ETG P+I F D  N   P+ H   G+ V +SNL
Sbjct: 243 ----------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVKTSNL 292

Query: 585 CTEITLNS-----SSEETAVCNLGSINL---LAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           C EITL +       + TAVC L SINL   L    N QF        I   +R LDNV 
Sbjct: 293 CAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQF--------IEDVMRFLDNVL 344

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I  
Sbjct: 345 QDFIDNAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRA 404

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS +LA+ERG          + GV                                
Sbjct: 405 GADAASRKLAEERGPCPDAA----EYGVME------------------------------ 430

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R S+ MAIAPTA+I+ I G  S  I+P   N++++  +SG F+V N  L   L 
Sbjct: 431 ------RFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLA 484

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +   DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I Q+Q
Sbjct: 485 AKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQ 544

Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           S+N++L     K+ L  I+ QAW  G+K+ YY RS S
Sbjct: 545 SINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLS 581


>gi|283856394|ref|YP_162774.2| ribonucleoside-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|283775393|gb|AAV89663.2| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 613

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 207/633 (32%), Positives = 305/633 (48%), Gaps = 96/633 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ +S 
Sbjct: 28  RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W  VR
Sbjct: 79  LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWGNVR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V     + L SP + +                    
Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGT-------------------- 237

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585
             RGE      + A +L++K++    +TG P+I F D  N   P+ H  +   V SSNLC
Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL+     +Q+  +K    I   +R LDNV    I
Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+     
Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKVNE 405

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LA+ERGA         D GV                                    
Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ +  
Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL
Sbjct: 486 DSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++     K  L  ++ +AW +G+K+ YYLRS+S
Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578


>gi|241761976|ref|ZP_04760061.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373656|gb|EER63228.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 613

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 207/633 (32%), Positives = 305/633 (48%), Gaps = 96/633 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ +S 
Sbjct: 28  RDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDYISR 78

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W  VR
Sbjct: 79  LWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWGNVR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 139 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 197

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V     + L SP + +                    
Sbjct: 198 SGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGT-------------------- 237

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585
             RGE      + A +L++K++    +TG P+I F D  N   P+ H  +   V SSNLC
Sbjct: 238 -KRGE------VDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSSNLC 290

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL+     +Q+  +K    I   +R LDNV    I
Sbjct: 291 SEITLPTGQDHLGNQRTAVCCLSSLNLVTW---DQWHDNK--RFIEDVMRFLDNVLQSYI 345

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  A  
Sbjct: 346 DNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANE 405

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LA+ERGA         D GV                                    
Sbjct: 406 ASMMLAKERGACPDAA----DMGVME---------------------------------- 427

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ +  
Sbjct: 428 --RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSK 485

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             + + + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL
Sbjct: 486 DSDTVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNL 545

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++     K  L  ++ +AW +G+K+ YYLRS+S
Sbjct: 546 FIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS 578


>gi|88606797|ref|YP_504939.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           phagocytophilum HZ]
 gi|88597860|gb|ABD43330.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaplasma
           phagocytophilum HZ]
          Length = 603

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 207/663 (31%), Positives = 313/663 (47%), Gaps = 108/663 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD      G  +L DRY L       E  Q  F+RVA       ++  + A   Y+
Sbjct: 13  IDYTRDDNLTNFGKAVLSDRYLLEK-----EDYQQLFVRVAQ----YYSDDSQHAQRLYD 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 64  YMSKLWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 124 GNLRSIGERVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 182

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 183 IRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKDKC--------------- 227

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VH 580
                       V   + A  LW K+LT   ETG P+I F D  N   P+  + +G+ V 
Sbjct: 228 ------------VISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVK 275

Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINLLAH---FANNQFDYDKLASTIRTAVRVL 632
            SNLCTEITL +  +      TAVC L S+NL  +     N QF        I   +R L
Sbjct: 276 MSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYYDMWCGNPQF--------IEDVMRFL 327

Query: 633 DNVIDINCHT----IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV+          +E+A+ S    R+IG+G+MGF S L    +P+ S  A     +   
Sbjct: 328 DNVLTDFVQKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFS 387

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           ++   A + S +LA E+GA                       + +D   M R        
Sbjct: 388 YLKSQADAVSRKLALEKGA---------------------CPDAQDANEMERF------- 419

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                        + +++APTA+I+ I G  S  I+P   N++    ++G F V N FL 
Sbjct: 420 ------------VHKLSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQ 467

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             LK +   D+ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +  R  +I
Sbjct: 468 ELLKSKGKDDDQVWSSISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYI 527

Query: 868 DQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QAQS+N++L  P+G   + L  ++  AW  GLK+ YY+RS+S    +K + + V+G   
Sbjct: 528 CQAQSVNIFL--PAGVHKRYLHKVHFLAWKKGLKSLYYMRSKSVQRADKVSHE-VNGAAA 584

Query: 925 AVP 927
            VP
Sbjct: 585 VVP 587


>gi|284175618|ref|ZP_06389587.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus 98/2]
 gi|261602517|gb|ACX92120.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus solfataricus 98/2]
          Length = 838

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 233/826 (28%), Positives = 391/826 (47%), Gaps = 118/826 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++ +   ++
Sbjct: 12  KIKVIKRDGKVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRVIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DFD          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++S   F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDL---HDLY--------GKEF--EIAYENYERQA-----D 530
           FM  V +     L +P +       H+ Y         +E+  E+     E +      D
Sbjct: 322 FMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVSLD 381

Query: 531 RGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             +I               V + ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL    +        D+D LA  IR  VR L
Sbjct: 442 GKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MNRTSR 743
           HA  AS+E+A+E+G + ++   L+    +     DS+   AE+ D+ +       +   +
Sbjct: 558 HAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQAAW 736

Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 737 QQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|15897814|ref|NP_342419.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
 gi|13814111|gb|AAK41209.1| Ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
          Length = 841

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 233/826 (28%), Positives = 391/826 (47%), Gaps = 118/826 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++ +   ++
Sbjct: 15  KIKVIKRDGKVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRVIADIV 70

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 71  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 102

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DFD          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 103 ------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 146

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++S   F+ ++PTL NS TR   LS+CF+ 
Sbjct: 147 RRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSACFVI 206

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 207 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 266

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 267 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 324

Query: 489 FMKRVTQNAGWTLFSPDEVSDL---HDLY--------GKEF--EIAYENYERQA-----D 530
           FM  V +     L +P +       H+ Y         +E+  E+     E +      D
Sbjct: 325 FMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVSLD 384

Query: 531 RGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             +I               V + ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 385 ESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 444

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL    +        D+D LA  IR  VR L
Sbjct: 445 GKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVRFL 500

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 501 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 560

Query: 693 HAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MNRTSR 743
           HA  AS+E+A+E+G + ++   L+    +     DS+   AE+ D+ +       +   +
Sbjct: 561 HAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVVDK 620

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 621 LDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 680

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 681 PLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQAAW 739

Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 740 QQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 784


>gi|157964543|ref|YP_001499367.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           massiliae MTU5]
 gi|157844319|gb|ABV84820.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           massiliae MTU5]
          Length = 617

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 34  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 84

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 85  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 144

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 145 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 203

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 204 KALNIHHGIAITDKFMKAVENNTDFDLVSP---------------------------ATK 236

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 237 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 296

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 297 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 355

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 356 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 415

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 416 A------------------------CPDALDAGSNERF----------------SNKTAI 435

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 436 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 495

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 496 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 555

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 556 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 584


>gi|296127718|ref|YP_003634970.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
 gi|296019534|gb|ADG72771.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
          Length = 771

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 230/809 (28%), Positives = 380/809 (46%), Gaps = 114/809 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +   A  G++  +++++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVTNWATGGIEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E  T   KK     H +           ++++G+K
Sbjct: 71  VNMISPLYPVYDTIAEKLYLMKIYKE--TCGLKKIGSYPHIK----------NFLKKGIK 118

Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            ++  + ++    D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +
Sbjct: 119 YKIYDKDIVKLFSDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITY 178

Query: 322 MRVAM--------------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           M  AM               L + + E+ K   + Y++LS      +TP + NS T   Q
Sbjct: 179 MTAAMFSFYNDYYKGENKDKLEISKAERLKYIKKTYDMLSRHEVTFATPRIANSMTIKAQ 238

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L+SC L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF
Sbjct: 239 LASCILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPF 298

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K    T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I +
Sbjct: 299 IKRVEQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +F +RV ++   TLF P E   L++ YG++F +AY  YE ++   +    +KI A  L  
Sbjct: 359 IFRERVNKDGYVTLFDPKETPLLNEEYGEKFNVAYMYYESKSSIRK----KKIKAKDLLF 414

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592
           ++L +  ETG+ ++TF D  NI         V +SNLC EI + S               
Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNKFVGASNLCQEIVIPSYPSKLIDEKYVINEE 472

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                     S E  +CNL SINL++      FD +K  S   T +R  DN+ID   + +
Sbjct: 473 GEYEIIQRKKSGEIGICNLVSINLMSWV---NFDEEKKKSFCYTLLRGCDNIIDTQFYPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ + +N  +R IG+G++ + + L    + Y   EA+E  ++  + + +H   AS  LA+
Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKLKYTDREALEFTNKVFDDLYYHIYQASNLLAK 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERG Y +F  S W  G+ P   I LL +  D+L ++   +  WD+L + +KT G+R S  
Sbjct: 590 ERGPYKTFNESKWKDGLTPF-HISLLNK-SDKLNVS-LDKEKWDKLAEEIKTSGVRFSFH 646

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAPTAT       ++SI+P                +V+ + V E              
Sbjct: 647 GAIAPTATSGKSVSATESIEP----------------IVDLYFVEE-------------- 676

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMW------LIESASRRQKWIDQAQSLNLYL 877
                     I+ +P  +  I       +  W      +IE A+ RQ++IDQ+QSLNLY 
Sbjct: 677 ---------GIQTLPSLVPNIKNNRAYYERCWAIPAKTIIELAAVRQRYIDQSQSLNLYY 727

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +P S K+L    + A  +GLKT YY+++
Sbjct: 728 VKPDSAKELWDDIQYAMDLGLKTLYYMKT 756


>gi|322511018|gb|ADX06331.1| putative ribonucleotide reductase large subunit A [Organic Lake
           phycodnavirus 2]
          Length = 831

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/323 (44%), Positives = 202/323 (62%), Gaps = 10/323 (3%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           YER+F  +Y G + L   Y +  N   +E  Q  +MRV++ +  +  +K K   E Y+ L
Sbjct: 127 YERNFLIDYFGYKTLERSYLMRNNNKVVENIQHLWMRVSIEIHGENLDKVK---ETYDGL 183

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
           S   F+ +TPTL+NSGTR PQLSSC+L  + DD + GIF  L E A ++K++GG+G    
Sbjct: 184 SKKLFIHATPTLYNSGTRRPQLSSCYLLGMEDDSIDGIFNTLHECASISKWAGGIGLHIH 243

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464
            VR  G HI GTNGKS G++P L+V N+TA  V+QGG KR G+   YLE WH D+EEFL+
Sbjct: 244 NVRSKGTHISGTNGKSNGIVPMLRVFNNTARYVDQGGGKRNGSFAIYLEPWHGDIEEFLE 303

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           LRKN G++  R  D+  A W+PDLFM ++ ++  W L  P++   L +LYG+ FE  Y  
Sbjct: 304 LRKNHGEEEMRARDLFYALWVPDLFMNKIEKDDDWYLMCPNQCEGLSELYGESFEALYNQ 363

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y  +      K  +K+ A  LW K+L    ETG P++ +KD CN +S Q+++G + SSNL
Sbjct: 364 YVSEG-----KYLKKMKARELWFKILDSQMETGTPYMLYKDACNKKSNQKNLGTIRSSNL 418

Query: 585 CTEITLNSSSEETAVCNLGSINL 607
           C EI   S  EE+AVCNL SI+L
Sbjct: 419 CCEIIEYSDKEESAVCNLASISL 441



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 168/303 (55%), Gaps = 12/303 (3%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FDY  L    +     L+N+ID+N +  EK + SN  HR IG+G+ G      ++++ + 
Sbjct: 525 FDYKGLHKITKIVTENLNNIIDVNYYPTEKTRLSNKKHRPIGIGVQGLADTFAMMNVAFD 584

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S +A +I  +  E +   ++  S+ELA+E+ G Y SF GS   QG+F  D   +      
Sbjct: 585 SNDAKQINKDIFETMYHASMEKSMELAKEKQGPYDSFDGSPLSQGIFQFDLWNVTP---- 640

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +++  WD+L+  +   G  NS C+A  PTA+ + I   ++  +P   N+Y +  
Sbjct: 641 ------SNKYNWDKLRNNIMEFGTYNSLCLAPMPTASTSQILSNNECFEPFTSNMYTRRT 694

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           ++G+F V+N  L+ EL   ++W+ ++ +++  H GSI  I+ IPD +K+ +   +E+   
Sbjct: 695 LAGEFMVINKHLMKELIDLNIWNSSIKNEIVKHKGSIQTIKEIPDYIKQKYKIVWEMSMK 754

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A  R  +I Q+QS+NL++++P+ K L  ++  AW  GLKT  YYLR ++    ++
Sbjct: 755 SIIDMAKDRGAYICQSQSMNLWVEDPNYKILTNMHLYAWKSGLKTGMYYLRRKAKHQAQQ 814

Query: 914 STL 916
            T+
Sbjct: 815 FTV 817


>gi|91763117|ref|ZP_01265081.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717530|gb|EAS84181.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 645

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 215/682 (31%), Positives = 313/682 (45%), Gaps = 107/682 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY  H      E  Q  F RVA   A    +    A   YN +S+
Sbjct: 55  RDSKLTDFGRATLKDRYLGHN-----ESYQDLFARVASSYA----DDNLHAQRIYNYISN 105

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYWGNLR 165

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  I G  GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+++R+ 
Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIEMRRP 224

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + +                   
Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDGQWALKSPADGT------------------- 265

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584
                   V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V +SNL
Sbjct: 266 --------VQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVKTSNL 317

Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C+EITL      +  + TAVC L S+NL  +   +++  D +   I   +R LDNV    
Sbjct: 318 CSEITLPTGIDKNGRDRTAVCCLSSLNLEKY---DEWKDDNV--MINDVMRFLDNVLTDF 372

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+      + AK S    R++GLG+MGF S L    IP  S  +     +  + I  H  
Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA ERGA        +++                                     
Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  ++P   N Y    +SG F V N +LV  L++  
Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+N
Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K+ L  I+  AW  GLK+ YY RS+S    E          +N    TD N+
Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE---------NVNDTKATDVNA 623

Query: 934 STHSLGIPSSCTSD-TECEVCQ 954
           + +     ++   +  EC  CQ
Sbjct: 624 NVYKSKPQTTEQPEYEECLSCQ 645


>gi|163784573|ref|ZP_02179422.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880159|gb|EDP73814.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 592

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/332 (43%), Positives = 201/332 (60%), Gaps = 5/332 (1%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
           F   +E GVK  L  E +++FDL  + N + YERD   +Y G+  L DRYF    NG  I
Sbjct: 101 FKEALEYGVKEGLYKEDILNFDLEKIENAIDYERDNLLDYFGMTTLKDRYFTKDRNGEII 160

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ FFMRVA+G+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC++ 
Sbjct: 161 EKPQWFFMRVALGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVN 216

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D L  I    +E A LAKY+GG+G D T +R  G+ I   N KS GVIPF+K+ +  
Sbjct: 217 VIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSAIKSLNAKSSGVIPFIKIFDTI 276

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             A+ QGG+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+R+ 
Sbjct: 277 VNAIQQGGRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAIWMPDEIMRRIK 336

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +     LF P E  +L   +GK+F   Y     +A+ GEIK+++KI +   +R+ L  L 
Sbjct: 337 EGEPLYLFDPAECPELVASWGKDFTEKYFECIEKAETGEIKLWKKIDSQEWFRRYLFKLA 396

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +TGHPW+TFKD  N  +P    GV++SSNLC 
Sbjct: 397 KTGHPWLTFKDRHNEHNPCPEYGVINSSNLCV 428


>gi|190571531|ref|YP_001975889.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018934|ref|ZP_03334742.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357803|emb|CAQ55259.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995885|gb|EEB56525.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 594

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 206/651 (31%), Positives = 317/651 (48%), Gaps = 103/651 (15%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           Y+A  + Y +D      G  +L DRY +       E  Q  F+R+A       ++ ++ A
Sbjct: 3   YIA--INYAKDSKLTDFGKAVLLDRYLI-----ENESYQDLFIRIANYY----SDNKEHA 51

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG
Sbjct: 52  QRLYDYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGG 111

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  +R +G  + G+ GK+ G++PF+ V N   +A++QG  R+G+   YL  WH ++
Sbjct: 112 IGSYWGNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEI 170

Query: 460 EEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEFLDLRK TG D  R+  +++ A  + D FM+ V  +  W L SP              
Sbjct: 171 EEFLDLRKPTGGDPNRKALNIHHAVIVTDKFMQAVEDDQEWDLISP-------------- 216

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              + N          KV   + A  +W K+LT   ETG P+I F D  N   P+ +  +
Sbjct: 217 ---HNN----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKL 263

Query: 579 ---VHSSNLCTEITLNSSSE-----ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTA 628
              +  SNLC+EITL +  +      TAVC L S+NL     + +N+         I   
Sbjct: 264 NLDIKMSNLCSEITLTTGYDHLKKSRTAVCCLSSVNLEYYEEWKDNEL-------FIEDI 316

Query: 629 VRVLDNVID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +R LDNV++  IN   + I++AK S    R+IGLG+MGF S L    +P+ S  A +   
Sbjct: 317 MRFLDNVLEDFINQAPNEIQRAKYSAIRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNK 376

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  + +   A   S +LA+E+G     K             I L+               
Sbjct: 377 KVFKHLREQADVVSKKLAEEKGPCLDAK------------EIDLME-------------- 410

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                         R ++ +AIAPTA+I+ I G  S  I+P   N++++  ++G F V N
Sbjct: 411 --------------RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRN 456

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            FL   L +++  ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R
Sbjct: 457 KFLQKLLAEKNQDNDEIWSSISTNEGSVQHLDFLSKHEKLTFKTAYELDQQWIIEHASDR 516

Query: 864 QKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             +I Q+QS+NL+L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 517 TPYICQSQSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567


>gi|332797062|ref|YP_004458562.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
 gi|332694797|gb|AEE94264.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
          Length = 841

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 202/683 (29%), Positives = 355/683 (51%), Gaps = 70/683 (10%)

Query: 289 RDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE-----TEKEKRAVE 341
           +D    Y  L++L  RY L   N  R IE PQ  F RVA  LA  E     +E E +A+E
Sbjct: 113 KDLLLTYNALKVLEARYLLKDPNTLRYIETPQMMFRRVAKYLASVELKYGKSESEVKALE 172

Query: 342 --FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLA 394
             FY+++S+  F+ +TPTL NSGTR   LS+CF+  V D +      GI+ AL+  A++ 
Sbjct: 173 EKFYDIMSNLRFLPNTPTLMNSGTRLGILSACFVIPVRDSMTTPEGDGIYDALRAMALVH 232

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG G D++ +R  G  +  T G + G + F+K+ + +   V QGGKR+GA    +  
Sbjct: 233 QQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMKIFDVSTDVVKQGGKRRGANMGVMHV 292

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV---SDLH 511
           WH ++E+F++ +     D  +  + N +  + D FM++V +     L +P +       H
Sbjct: 293 WHAEIEDFINSKSGKLKD-VQLQNFNISVGVYDYFMEKVERGEEVPLITPRKTRIPGTDH 351

Query: 512 DLY--------GKEF---EIAYENYERQA----DRGEI--------------KVFRKISA 542
           D Y         +E+   EI  E  E+      D  +I               + R I+A
Sbjct: 352 DYYINKARNYMSEEWVQEEILNELEEKGGAVWLDESKIITVDEALVIAEKEGAIIRWINA 411

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            +L+ +++   +++G P + F D  N R P  ++G ++++N C E  L         CNL
Sbjct: 412 RSLFNEIVRSAWDSGDPGLLFIDEINRRHPVWYLGKINATNPCGEEPLLPWES----CNL 467

Query: 603 GSINL---LAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           GSINL   +    N ++ D+D LA TI+ AVR+LDNVID N + +++ +++  + R +GL
Sbjct: 468 GSINLEKFVKETENGKYIDWDGLAETIKYAVRLLDNVIDANKYPLKQIEQATKSTRKVGL 527

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714
           G+MG    L  L IPY S +A+ ++ +  +FI +HA   S+ELA+E+G++  +       
Sbjct: 528 GVMGLARMLIKLGIPYDSVDAIYLSYQVAKFIYYHAFKTSIELAKEKGSFPVYDPLRYHD 587

Query: 715 LWDQGVFPIDSIGLLAEVR---DELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAP 768
           +W+    P + +  + +V     E     T+   ++ + ELK      G+RN+  +++AP
Sbjct: 588 IWESAR-PFEYLLEVTKVEGKPSEYVRKLTAIVDKIDFSELKAERIKHGLRNATVVSVAP 646

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T TI+ I G S SI+P +   ++++   G F  ++S  +  L++ +L +  ++  +    
Sbjct: 647 TGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDSLFLEYLRKYELDNPEVVKKVA-ET 705

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLD 886
           G++G    +P  ++K+  TA E+ P + +   +  Q+W D   ++++NL  +EP  + ++
Sbjct: 706 GTVGENMFMPATIRKLFRTAHEVPPEYHLLHQAAWQQWNDSGTSKTINLRSEEPP-ETVE 764

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909
            +Y  AW +G+K     R +S +
Sbjct: 765 RVYLMAWKLGVKGITVYRDKSKS 787


>gi|42520094|ref|NP_966009.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696744|ref|ZP_00372286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698281|ref|ZP_00373199.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|99036013|ref|ZP_01315053.1| hypothetical protein Wendoof_01000107 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630021|ref|YP_002726812.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
 gi|42409831|gb|AAS13943.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535205|gb|EAL59286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537070|gb|EAL60196.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592002|gb|ACN95021.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
          Length = 594

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 204/644 (31%), Positives = 318/644 (49%), Gaps = 97/644 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y +D      G  +L DRY +       E  Q  F R+A       ++ ++ A   Y+
Sbjct: 6   INYAKDSKLTDFGKAVLSDRYLI-----ENESYQDLFARIANYY----SDNKEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++ A  + D FM+ V  +  W L SP                 + 
Sbjct: 176 LRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISP-----------------HN 218

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
           N          KV   + A  +W K+LT   ETG P+I F D  N   P+ +  +   + 
Sbjct: 219 N----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIK 268

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +     +   TAVC L S+NL  +    ++  +KL   I   +R LDNV
Sbjct: 269 MSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYY---EEWKDNKL--FIEDIMRFLDNV 323

Query: 636 ID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  IN   + +++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++ 
Sbjct: 324 LEDFINKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLR 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA+E+GA S  K             + L+                      
Sbjct: 384 EQADIVSKKLAEEKGACSDAK------------EVDLME--------------------- 410

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R ++ +AIAPTA+I+ I G  S  I+P   N++++  ++G F V N FL   L
Sbjct: 411 -------RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +++  ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+
Sbjct: 464 AEKNQDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQS 523

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+NL+L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 524 QSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567


>gi|67459101|ref|YP_246725.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           felis URRWXCal2]
 gi|67004634|gb|AAY61560.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia felis
           URRWXCal2]
          Length = 607

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574


>gi|103487258|ref|YP_616819.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingopyxis
           alaskensis RB2256]
 gi|98977335|gb|ABF53486.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 676

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 212/649 (32%), Positives = 314/649 (48%), Gaps = 109/649 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ +S 
Sbjct: 91  RDALLTDFGKETLQDRYLLPG-----ESYQDLFARVADAYA----DDQDHAQRLYDYISK 141

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 142 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVGTWNENVWLASRGGGIGTYWGAVR 201

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 202 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKP 260

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    I D FM+ V     + L SP + S                    
Sbjct: 261 SGDFNRKALNLHHGVLITDEFMEAVRDGTEFNLRSPKDNS-------------------- 300

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V   + A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 301 -------VRGTVDARSLFQKLVETRLATGEPYIIFIDQVNRMMPKHHRDLGLKVTTSNLC 353

Query: 586 TEITLNSS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      ++++ DK    I   +R+LDNV    I
Sbjct: 354 SEITLPTGRDHLGNDRTAVCCLSSLNLETW---DEWNGDK--RFIEDVMRMLDNVLQDYI 408

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++GLG+MGF S L    +P+    A        + I      
Sbjct: 409 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSSNLRIFKHIRAQVDQ 468

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LA+ERG          DQGV                                    
Sbjct: 469 ASMLLAKERGPCPDAA----DQGV------------------------------------ 488

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVN----SFLVNEL 810
            M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F++ N    + LV++ 
Sbjct: 489 -MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIRNPHLEALLVDKA 547

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K  D    A+ + +    GS+ +++ +  D K +  T+FEID  WL+E A+ R  +IDQA
Sbjct: 548 KNSD----AVWNSILERGGSVQHLDFLTQDEKDVFKTSFEIDQRWLLELAADRTPYIDQA 603

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            SLNL++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G
Sbjct: 604 ASLNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 649


>gi|296282220|ref|ZP_06860218.1| ribonucleotide-diphosphate reductase subunit alpha [Citromicrobium
           bathyomarinum JL354]
          Length = 690

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 307/634 (48%), Gaps = 98/634 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ +S+
Sbjct: 100 RDANLTEFGKETLEDRYLLPG-----ESYQDLFARVADAYA----DDQAHAQRLYDYISN 150

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 151 LWFMPATPVLSNGGTNRGLPISCYLNSVEDSLNGIVDTWNENVWLASKGGGIGTYWGNVR 210

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++RK 
Sbjct: 211 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEIRKP 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM++V     + L SP + S                    
Sbjct: 270 SGDFNRKALNLHHGVLVTDEFMEKVRAGEEFDLVSPRDGS-------------------- 309

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
                  V + + A +L++K++     TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 310 -------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNSMMPKHHRDLGLKVSTSNLC 362

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      ++++ DK    I   +R LDNV    I
Sbjct: 363 SEITLPTGRDHLGNDRTAVCCLSSLNLEKW---DEWNSDK--QFIEDVMRFLDNVLQDYI 417

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++G+G+MGF S L   ++P   P A     +  + IS  A  
Sbjct: 418 DRAPPEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNIKMFQHISTAANE 477

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ LA ERG                        +  +  AM R S              
Sbjct: 478 ASMMLAHERGP---------------------CPDAEEMGAMERFS-------------- 502

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                 C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++ 
Sbjct: 503 ------CKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLQELLAKKS 556

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                + + +    GS+ +++ +  + K I+ T+FEID  WL+E A+ R   IDQAQSLN
Sbjct: 557 KDSTNVWNSILERGGSVAHLDFLTPEEKAIYKTSFEIDQRWLLEFAADRSPMIDQAQSLN 616

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907
           L++     K  L  ++  AW   +K+ YYLRS+S
Sbjct: 617 LFIPADVDKWDLMMLHFHAWEKKIKSLYYLRSKS 650


>gi|254293197|ref|YP_003059220.1| ribonucleotide-diphosphate reductase subunit alpha [Hirschia
           baltica ATCC 49814]
 gi|254041728|gb|ACT58523.1| ribonucleoside-diphosphate reductase, alpha subunit [Hirschia
           baltica ATCC 49814]
          Length = 621

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 215/676 (31%), Positives = 318/676 (47%), Gaps = 103/676 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L   G      Q  F RVA   A    +  + A   Y+ +S 
Sbjct: 39  RDELLTEFGKKTLTDRYILPGEGY-----QEMFARVAEAYA----DDAEHAQRIYDYMSR 89

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W  VR
Sbjct: 90  LWFMPATPVLSNGGAGRGLPISCFLNDVNDSLDGIVETWNENVWLASNGGGIGTYWGNVR 149

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  I G  GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 150 SIGETI-GNAGKTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEIRKP 208

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM+ V  +  + L SP          G+E           
Sbjct: 209 SGDFNRKSLNLHHGLNISDAFMEAVKNDEEFGLISPKT--------GEE----------- 249

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
                    +KI+A  LW+K+L +  +TG P++ + D  N   P  Q+ +G+ V  SNLC
Sbjct: 250 --------VKKINARKLWQKILEVRIQTGEPYLIYSDTVNNAMPAHQRQLGMKVKQSNLC 301

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +EI L++      ++ TAVC L S+N    F   + D + L    R    VL + ID   
Sbjct: 302 SEIMLHTGLDHLGNDRTAVCCLSSVN-AEKFLEWKNDENFLEDIFRFLDNVLQDFIDRAP 360

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +A  S    R++GLGLMG  S L  +++P  S  A    +   + I   + +ASV+
Sbjct: 361 PEMARAAYSATRERSVGLGLMGMHSFLQSMNVPMESATAKSWNNMIFKHIRRGSDAASVK 420

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG                 +  G++A                            R 
Sbjct: 421 LAKERGPCPD------------AEECGVMA----------------------------RF 440

Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           S+ MAIAPTA+I+ IC G S  I+P   N+Y    +SG FTV N  L   L+ +    + 
Sbjct: 441 SHKMAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPHLEKVLEAKGKNTDG 500

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           + + +   +GS+  ++ + +  K    TAFEID  WLIE A+ R  +I QAQSLNL+L  
Sbjct: 501 IWAIILEAEGSVQGLDFLDEHEKATFRTAFEIDQRWLIELAADRTPYICQAQSLNLFLPA 560

Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
              K  L  ++  AW  GLK+ YY RS+   SV++++  G + K+    +  P+      
Sbjct: 561 DIDKWDLHMLHWSAWEKGLKSLYYCRSK---SVQRASFAGAEDKVKVEGMDTPD------ 611

Query: 939 GIPSSCTSDTECEVCQ 954
                 T   EC  CQ
Sbjct: 612 ------TDYDECLACQ 621


>gi|157825768|ref|YP_001493488.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           akari str. Hartford]
 gi|157799726|gb|ABV74980.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           akari str. Hartford]
          Length = 607

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  KI A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKIRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+   +T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLASLN-LEYYEEWKDDKEFIYSIMLFLDNVLEDFINKAPNTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQIKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + +  K++  TA+EID  WLIE AS R  +I QAQSLN+++     KK 
Sbjct: 486 THEGSVQHLTFLSEAEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFVPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574


>gi|91205548|ref|YP_537903.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii RML369-C]
 gi|91069092|gb|ABE04814.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia bellii
           RML369-C]
          Length = 607

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 306/637 (48%), Gaps = 92/637 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKEHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   IH
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEAIH 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           ++ +++    I D FM+ V  N  + L SP                              
Sbjct: 194 KSLNIHHGIAITDKFMQAVENNTDFELISP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLHVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + + +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIPTIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E++S     ASV++ +E+G
Sbjct: 346 KYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYVSKEVEEASVKIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIS 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQAQSLNVFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKG 918
           L+ I+ +AW  G+K+ YY RS S   A  V    LKG
Sbjct: 546 LNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKG 582


>gi|227827566|ref|YP_002829346.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238619723|ref|YP_002914549.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
 gi|227459362|gb|ACP38048.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238380793|gb|ACR41881.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
          Length = 838

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 233/830 (28%), Positives = 392/830 (47%), Gaps = 126/830 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++     ++
Sbjct: 12  KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DF+          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++SS  F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532
           FM+ V +     L +P +      + G++ E        Y N E           ++G  
Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL    +      + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739
           FI +HA  AS+E+A+E+G + ++   L+    +     +S+  +AEV D+ +       +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 733 QAAWQQWNDSGTSKTINLRFEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|157827264|ref|YP_001496328.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
 gi|157802568|gb|ABV79291.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
          Length = 607

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 306/637 (48%), Gaps = 92/637 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKEHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   IH
Sbjct: 75  PILSNGGTDRGLPISCFLNETGDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEAIH 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           ++ +++    I D FM+ V  N  + L SP                              
Sbjct: 194 KSLNIHHGIAITDKFMQAVENNTDFELISP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLHVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + + +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIPTIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E++S     ASV++ +E+G
Sbjct: 346 KYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYVSKEVEEASVKIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIS 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQAQSLNVFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKG 918
           L+ I+ +AW  G+K+ YY RS S   A  V    LKG
Sbjct: 546 LNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKG 582


>gi|157803770|ref|YP_001492319.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           canadensis str. McKiel]
 gi|157785033|gb|ABV73534.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           canadensis str. McKiel]
          Length = 607

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 301/629 (47%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   IH
Sbjct: 75  PILSNGGTDRGLPISCFLNETNDSLDDIVNLWTENVWLASRGGGIGSYWGNVRSINEEIH 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+  G D  R
Sbjct: 135 -NKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPIGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           ++ +++    I D FM  V  N  + L SP                              
Sbjct: 194 KSLNIHHGIAITDEFMNAVENNTDFNLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVTNKVRARDLWIKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +      +  TAVC L S+N L +F   + D   + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGNSRTAVCCLSSLN-LEYFEEWKDDKAFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  +  + K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSAEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 574


>gi|15892570|ref|NP_360284.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           conorii str. Malish 7]
 gi|15619734|gb|AAL03185.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           conorii str. Malish 7]
          Length = 607

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS     AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574


>gi|238650261|ref|YP_002916113.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
 gi|238624359|gb|ACR47065.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
          Length = 607

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS     AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574


>gi|323474617|gb|ADX85223.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus REY15A]
 gi|323477349|gb|ADX82587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus HVE10/4]
          Length = 838

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 232/830 (27%), Positives = 390/830 (46%), Gaps = 126/830 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++     ++
Sbjct: 12  KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DF+          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKETEKEKRAVE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E + +K   E       FY ++SS  F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYDKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532
           FM+ V +     L +P +      + G++ E        Y N E           ++G  
Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL    +      + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739
           FI +HA  AS+E+A+E+G + ++   L+    +     +S+  +AEV D+ +       +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVTDKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|227830253|ref|YP_002832033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|229579068|ref|YP_002837466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284997676|ref|YP_003419443.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
 gi|227456701|gb|ACP35388.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|228009782|gb|ACP45544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284445571|gb|ADB87073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
          Length = 838

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 233/830 (28%), Positives = 392/830 (47%), Gaps = 126/830 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++     ++
Sbjct: 12  KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DF+          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++SS  F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532
           FM+ V +     L +P +      + G++ E        Y N E           ++G  
Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL    +      + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739
           FI +HA  AS+E+A+E+G + ++   L+    +     +S+  +AEV D+ +       +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|71083846|ref|YP_266566.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062959|gb|AAZ21962.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 645

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 214/682 (31%), Positives = 313/682 (45%), Gaps = 107/682 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY       + E  Q  F RVA   A    +    A   YN +S+
Sbjct: 55  RDSKLTDFGKATLKDRYL-----GQNESFQDLFARVASSYA----DDNLHAQRIYNYISN 105

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYWGNLR 165

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  I G  GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+++R+ 
Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIEMRRP 224

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + +                   
Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPADGT------------------- 265

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584
                   V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V +SNL
Sbjct: 266 --------VQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVKTSNL 317

Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C+EITL      +  + TAVC L S+NL  +   +++  D +   I   +R LDNV    
Sbjct: 318 CSEITLPTGIDKNGRDRTAVCCLSSLNLEKY---DEWKDDNV--MINDVMRFLDNVLTDF 372

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+      + AK S    R++GLG+MGF S L    IP  S  +     +  + I  H  
Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA ERGA        +++                                     
Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  ++P   N Y    +SG F V N +LV  L++  
Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+N
Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K+ L  I+  AW  GLK+ YY RS+S    E          +N    TD N+
Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE---------NVNDTKATDVNA 623

Query: 934 STHSLGIPSSCTSD-TECEVCQ 954
           + +     ++   +  EC  CQ
Sbjct: 624 NVYKSKPQTTEQPEYEECLSCQ 645


>gi|300870142|ref|YP_003785013.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           pilosicoli 95/1000]
 gi|300687841|gb|ADK30512.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 771

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 224/809 (27%), Positives = 383/809 (47%), Gaps = 114/809 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L+ ++  A  G +  ++ ++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLKKVINWATDGKEGFTNALLEGLNIK-INDRMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I    P+Y  +  +  L K+ +E  T   KK     H +           ++++GVK
Sbjct: 71  VNKISPLYPSYDTIAEKLYLMKIYKE--TCKLKKTGSYPHIKT----------FLKKGVK 118

Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            ++  ++++    D +L  + + +  +RD  F Y GL I Y +Y  +I   ++E+PQ  +
Sbjct: 119 HKVYDKNIVSLFSDKELDKINSMIVPDRDLLFTYKGLAIFYRKYCKNIGSKKLELPQITY 178

Query: 322 MRVAMG--------------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           M  AM               +   +T++ K     Y++LS      +TP + NS +  PQ
Sbjct: 179 MVAAMFSFYDDFYKGANKDIVEKTKTDRLKYIKRTYDMLSKHEVTFATPRIANSMSIRPQ 238

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L+SC L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G +PF
Sbjct: 239 LASCILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQSNRGRSDGPVPF 298

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K    T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I +
Sbjct: 299 IKRTEQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +RV ++   TLF P E   L++ +G+ F +AY  YE ++   +    ++I A  L  
Sbjct: 359 ILRERVNKDEYITLFDPKETPLLNEEFGENFNVAYIYYESKSSIRK----KRIKAKDLLF 414

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592
           ++L +  ETG+ ++TF D  NI         V +SNLC EI + S               
Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNKFVGASNLCQEIVIPSFPSKLIEEKYVVNED 472

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                     S E  +CNL S+NL++      F  +K  S   T +R  DN+ID   + +
Sbjct: 473 GSYEIVQRKKSGEIGICNLVSVNLMSWV---NFSEEKKKSFCYTLLRGCDNIIDSQFYPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ + +N  +R IG+G++ + + L    + Y   EA+E  ++  E + +H   AS  LA+
Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKLKYTDKEALEFTNKIFEDLYYHIYEASNILAK 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLL---AEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           ERG Y +F  S W +G  P+  I LL   + ++ ++ M++     W++L + +K  G+R 
Sbjct: 590 ERGPYKTFNESKWREGKTPV-HISLLNKSSNLKFDIDMDK-----WNKLAENIKNYGVRF 643

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S   AIAPTAT       ++SI+P                +V+ F V E           
Sbjct: 644 SFHGAIAPTATSGKSVSATESIEP----------------IVDLFFVEE----------- 676

Query: 821 ISDLKYHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                     I  +  +  +LKK    +   ++I    +IE A+ RQ++IDQ+QSLNLY 
Sbjct: 677 ---------GIQTLPSLAPNLKKNREYYERCWDIPAKTIIELAAIRQRYIDQSQSLNLYY 727

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +P S K+L    + A  +GLKT YY+++
Sbjct: 728 VKPDSAKELWDDIQYAMDLGLKTLYYMKT 756


>gi|157828521|ref|YP_001494763.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933239|ref|YP_001650028.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. Iowa]
 gi|157801002|gb|ABV76255.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908326|gb|ABY72622.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           rickettsii str. Iowa]
          Length = 607

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVKNNTDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS     AS+E+ +E+ 
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEK- 404

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                       GV P           D L      R                 SN  AI
Sbjct: 405 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574


>gi|73667183|ref|YP_303199.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia canis
           str. Jake]
 gi|72394324|gb|AAZ68601.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 622

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 207/645 (32%), Positives = 302/645 (46%), Gaps = 103/645 (15%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           Y RD      G  +L DRY L       E  Q  F+R++       ++  + A   Y+ +
Sbjct: 35  YGRDNNLTSFGKAVLSDRYLLEN-----EDYQQLFVRISEYY----SDNPEHAQRLYDYM 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  
Sbjct: 86  SQLWFMPATPILSNGGTNRGLPISCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYWGN 145

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +G  + G+ GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLDLR
Sbjct: 146 LRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDLR 204

Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           K TG D  R+  +++    + D FMK V  +  W L SP + S                 
Sbjct: 205 KPTGGDPNRKALNIHHGVVLSDKFMKCVENDEPWDLISPKDQS----------------- 247

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSS 582
                     V   + A  +W K+LT   ETG P+I F D      P+ +  +   +  S
Sbjct: 248 ----------VIFTVKARDIWIKILTTRVETGEPYILFIDQVEQNKPEIYKKLNLNIKMS 297

Query: 583 NLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLAST---IRTAVRVLDN 634
           NLCTEITL +     +   TA+C L S+NL          Y+K       I   +R LDN
Sbjct: 298 NLCTEITLTTGYDHLNKSRTAICCLASLNLEY--------YEKWKDNSLFIEDVMRFLDN 349

Query: 635 V----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V    I+   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I
Sbjct: 350 VLTDFIEKAPNDMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHI 409

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             HA +AS  +A E+G+    +    D GV                              
Sbjct: 410 KRHADAASYNIAMEKGSCPDAQ----DAGVIE---------------------------- 437

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                   R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   
Sbjct: 438 --------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKL 489

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L  +   +E + S +  ++GS+ +++ + ++ K I  TA+E+D  W+IE  S R K+I Q
Sbjct: 490 LIVKGKDNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQ 549

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           AQS+N++L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 550 AQSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYCRSKSIQRADK 594


>gi|229586744|ref|YP_002845245.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           africae ESF-5]
 gi|228021794|gb|ACP53502.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           africae ESF-5]
          Length = 607

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----QGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS     AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRIPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574


>gi|315497332|ref|YP_004086136.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
 gi|315415344|gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
          Length = 625

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 219/680 (32%), Positives = 319/680 (46%), Gaps = 110/680 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +D      G + L DRY L       E  Q  F RVA   A    +  + A   YN +S+
Sbjct: 42  KDDKLTEFGKKTLDDRYLLAG-----ETYQDMFARVATAYA----DDSEHAQRIYNYISN 92

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G +     SCFL  VPD L GI     EN  LA   GG+G  W  VR
Sbjct: 93  LWFMPATPVLSNGGAKRGLPISCFLNAVPDSLEGIVSVWNENVALASNGGGIGTYWGGVR 152

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   Y++ +H ++EEFL++RK 
Sbjct: 153 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYIDIFHPEIEEFLEIRKP 211

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    I D FM+ V   A + L SP                  +N E  
Sbjct: 212 SGDFNRKALNLHHGISITDEFMEAVRDGAQFGLRSP------------------KNNE-- 251

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLC 585
                  + R + A ALW+K+L +  +TG P++ F D  N  +   Q+ +G+ V  SNLC
Sbjct: 252 -------IIRYVDARALWQKILEIRMQTGEPYLIFADTVNRSMAPHQRELGLKVKQSNLC 304

Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            EI L++       E TAVC L S+N     A    ++      I   +R LDNV++   
Sbjct: 305 AEIMLHTGKDHLGHERTAVCCLSSVN-----AETFLEWRDEPRFIEDIMRFLDNVLEDFI 359

Query: 641 HT----IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +  A  S    R++GLGLMGF S L    + + S  A        + +   A  
Sbjct: 360 QSAPDAMSAAIYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADK 419

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV+LAQERG                     L AE R  +                    
Sbjct: 420 ASVKLAQERGPC-------------------LDAEERGVME------------------- 441

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N FL   L ++ +
Sbjct: 442 --RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPFLRALLAEKGI 499

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                   +  H+GS+ +I+ + +D K I  TAFEID  W++E A+ R   I Q+QSLN+
Sbjct: 500 DTPETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELAADRAPEICQSQSLNI 559

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  G+K+ YYLRS+   SV+++   G +GK  AV +      
Sbjct: 560 FLPGDVDKWDLHMLHWTAWEQGVKSLYYLRSK---SVQRAAFAGSEGKAAAVSMA----- 611

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                  S  T   EC  CQ
Sbjct: 612 ------ASGKTDYEECLACQ 625


>gi|229584769|ref|YP_002843271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
 gi|228019819|gb|ACP55226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
          Length = 838

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 233/830 (28%), Positives = 391/830 (47%), Gaps = 126/830 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++     ++
Sbjct: 12  KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DF+          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++SS  F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532
           FM+ V +     L +P +      + G++ E        Y N E           ++G  
Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL    +      + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739
           FI +HA  AS+E+A+E+G + ++   L+    +     +S+  +AEV D+ +        
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTG 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTIVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|154250960|ref|YP_001411784.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154154910|gb|ABS62127.1| ribonucleoside-diphosphate reductase, alpha subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 218/686 (31%), Positives = 314/686 (45%), Gaps = 102/686 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L DRY +       E  Q  F RVA   A K       A   Y+
Sbjct: 62  VDHGRDALLTEFGKATLRDRYLMPG-----ESYQDMFARVASFYADKG--DAGHAQRLYD 114

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W
Sbjct: 115 YISKLWFMPATPVLSNGGTQRGLPISCFLNEASDSLDGIVGLWNENVWLAAKGGGIGSYW 174

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 175 GNLRSIGETV-GGNGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPIDHPEIEEFME 233

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +A W L SP + S               
Sbjct: 234 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVEADAEWQLKSPKDRS--------------- 278

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VH 580
                       V + +SA +LW ++LT   ETG P+I +KD  N   P+ H   G+ V 
Sbjct: 279 ------------VQKTVSARSLWIRLLTSRIETGEPYIIYKDTVNNARPEHHKLAGLEVK 326

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC EITL +       + TAVC L S+NL  +  N   D+    + I   +R LDNV
Sbjct: 327 TSNLCAEITLPTGIDQHGEQRTAVCCLSSLNLETY--NEWQDH---PTIIEDVMRFLDNV 381

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     + +AK +    R++GLG+MGF S L    IP+    A          I 
Sbjct: 382 LQDFIDRAPDDMRRAKYAAMRERSVGLGVMGFHSYLQANMIPFEGVMAKVWNKRMFARIK 441

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERGA                           E   N            
Sbjct: 442 EGVDAASKKLAEERGACPDAA----------------------EYGFNE----------- 468

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R SN  AIAPTA+I+ I  G S  I+P   N +    +SG F V N  L   L
Sbjct: 469 -------RFSNKTAIAPTASISIITGGTSPGIEPIAANSFTHKTLSGSFNVRNRHLTKLL 521

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + +   D+   S +  + GS+ +++ + D+ K +  TAFE+D  W+IE A  R   +DQA
Sbjct: 522 ELKGRNDDDTWSSIVVNGGSVQHLDFLSDEEKDVFKTAFELDQRWVIEHAGDRAPLVDQA 581

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-VDGKLNAVPV 928
           QS+NL+L     K+ L  ++  AW  G+K+ YY RS S    EK+ +   + GK+  V  
Sbjct: 582 QSVNLFLAADVHKRDLHKLHFMAWQHGVKSLYYCRSLSIQRAEKAEVVSLLPGKVLDVLT 641

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            D       +   +      EC  CQ
Sbjct: 642 LD------QVAAEAQSNDYEECLACQ 661


>gi|31322340|gb|AAP15463.1| ribonucleotide reductase large subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 607

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 302/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVKNNTDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS     AS+E+ +E+ 
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAETDKASIEIGKEK- 404

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                       GV P           D L      R                 SN  AI
Sbjct: 405 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGPFNVRNKHLERLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWTKGVKSLYYCRSTSIQRADK 574


>gi|58040421|ref|YP_192385.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconobacter
           oxydans 621H]
 gi|58002835|gb|AAW61729.1| Ribonucleoside-diphosphate reductase alpha chain [Gluconobacter
           oxydans 621H]
          Length = 658

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 207/634 (32%), Positives = 297/634 (46%), Gaps = 97/634 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L +RY L       E  QA F RVA          ++     Y+ +S 
Sbjct: 61  RDSLLTDFGKATLNNRYLL-----PGEDYQALFARVASYYGADAGHAQR----IYDYISR 111

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W  +R
Sbjct: 112 HWFMPATPVLSNGGTERGLPISCFLNEAEDSLSGIVGLWNENVWLASKGGGIGSYWGNLR 171

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G +I G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH +VEEF+++R+ 
Sbjct: 172 SIGENI-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEVEEFVEMRRP 230

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + S +                 
Sbjct: 231 TGGDPNRKALNLHHGVLVTDAFMRAVENDEEWALLSPKDHSTI----------------- 273

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                     RK+SA  LW ++LT   E G P+I + D  N   P+ H   G+ V +SNL
Sbjct: 274 ----------RKVSARGLWIRILTARMEQGEPYIIYSDHVNRARPEHHKLAGLEVKTSNL 323

Query: 585 CTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C EITL +         TAVC L S+NL         ++      I   +  LDNV    
Sbjct: 324 CAEITLPTGIDHHGKNRTAVCCLSSLNL-----ETWDEWKDDPQFIEDVMLFLDNVLQDF 378

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID     + +AK +    R++GLG+MGF S L    IP+ S  A     +  E I   A 
Sbjct: 379 IDRAPDDMARAKYAAARERSVGLGVMGFHSFLQARMIPFESVMAKVWNRKIFEHIRKQAD 438

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS  LA+ RG                    G +                          
Sbjct: 439 AASKHLAEVRGPCPDAA------------EYGFME------------------------- 461

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R S+ +AIAPTA+I+ I G  S  I+P   N++++  +SG F+V N  L   L++R 
Sbjct: 462 ---RFSHKLAIAPTASISIITGNASPGIEPISANVFLQKTLSGSFSVRNRHLKKILEERG 518

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GS+ N++ +  D K +  TAFE+D  W++E A+ R  +I QAQS+N
Sbjct: 519 YDTDEVWSAITLNKGSVQNLDFLTQDEKDVFKTAFELDQRWVVEHAADRAPFICQAQSVN 578

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           L+L     K+ L  I+ QAW  GLK+ YY RS S
Sbjct: 579 LFLPADVHKRDLHQIHFQAWKKGLKSLYYCRSLS 612


>gi|225631267|ref|ZP_03787950.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591041|gb|EEH12240.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 584

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 202/636 (31%), Positives = 315/636 (49%), Gaps = 97/636 (15%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F   G  +L DRY +       E  Q  F R+A       ++ ++ A   Y+ +S+  FM
Sbjct: 4   FTDFGKAVLSDRYLI-----ENESYQDLFARIANYY----SDNKEHAQRLYDYMSNLWFM 54

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R +G 
Sbjct: 55  PSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGE 114

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            + G+ GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLDLRK TG D
Sbjct: 115 SVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGD 173

Query: 473 -RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R+  +++ A  + D FM+ V  +  W L SP                 + N       
Sbjct: 174 PNRKALNIHHAVIVTDKFMQAVENDQEWNLISP-----------------HNN------- 209

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEI 588
              KV   + A  +W K+LT   ETG P+I F D  N   P+ +  +   +  SNLC+EI
Sbjct: 210 ---KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEI 266

Query: 589 TLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--IN-- 639
           TL +     +   TAVC L S+NL  +    +++ +KL   I   +R LDNV++  IN  
Sbjct: 267 TLTTGYDHLNKSRTAVCCLSSVNLEYY---EEWEDNKL--FIEDIMRFLDNVLEDFINKA 321

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++   A   S 
Sbjct: 322 PNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSK 381

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA+E+GA    K             + L+                             R
Sbjct: 382 KLAEEKGACPDAK------------EVDLME----------------------------R 401

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            ++ +AIAPTA+I+ I G  S  I+P   N++++  ++G F V N FL   L +++  ++
Sbjct: 402 FTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDND 461

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+NL+L 
Sbjct: 462 KIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASNRTSYICQSQSVNLFLP 521

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
               K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 522 ANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 557


>gi|254168705|ref|ZP_04875547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622331|gb|EDY34904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 243/893 (27%), Positives = 408/893 (45%), Gaps = 172/893 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHN 87
           ++VIKR+G +  F   KI +AIMKA  ++ G G   + RV + +++ + E  V R     
Sbjct: 19  MKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRVER----- 73

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                + +E IQD VE +LM  G+  + + Y+LYREER  +R A            K  I
Sbjct: 74  -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 116

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + D   ++ N+ +    V EA   L+D +  ++  ET + M++  +   L    IF   
Sbjct: 117 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 169

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            + +KE               ++E    V +KP+  +  E   L    F  + +EG    
Sbjct: 170 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 211

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
                 M  D  Y+ + LK + D                      +IE  +  F  V + 
Sbjct: 212 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 243

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
                                  ++ ++PTL N+ T+  QLS+CF+  VPD + GIF A+
Sbjct: 244 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 283

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA
Sbjct: 284 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 343

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               L   H D+ EF+  + +   + +   + N +  + D FM  + ++  + L +P   
Sbjct: 344 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN- 399

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                  G+E                    ++I A  +W  ++T  ++TG P + F D  
Sbjct: 400 -------GEEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEV 433

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N + P +H+G + S+N C E  L         CNLGSINL     N +  +D L  T+ T
Sbjct: 434 NRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 489

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY S EAVE+A++ M
Sbjct: 490 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 549

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           +FI+  +  AS++LA++RG + +++GS W                             W 
Sbjct: 550 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 580

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806
                 K + +RN+    IAPT TI+ I G S SI+P +   +++  + G +   VN   
Sbjct: 581 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 634

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +IDP+W +   +  QK+
Sbjct: 635 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 693

Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
           +D A  +++NL  D  S   ++  Y  AW +  K  T Y   S++   + K T
Sbjct: 694 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 745


>gi|225619346|ref|YP_002720572.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           hyodysenteriae WA1]
 gi|225214165|gb|ACN82899.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 773

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 224/803 (27%), Positives = 379/803 (47%), Gaps = 100/803 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +++ A  G +  +++++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVIDWATEGKEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E  T   KK     H +           ++++G+K
Sbjct: 71  VNMISPLYPMYDTIAEKLYLMKIYKE--TCGLKKIGSYPHIK----------NFLKKGIK 118

Query: 266 ARLLHESMM----DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            ++  + ++    D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +
Sbjct: 119 YKIYDKDIIQLFTDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITY 178

Query: 322 MRVAM--------------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           M  AM               L + ++E+ K     Y++LS      +TP + NS T   Q
Sbjct: 179 MVAAMFSFYDDYYKGENKDKLEISKSERLKYIKRTYDMLSRHEVTFATPRIANSMTIKAQ 238

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L+SC L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF
Sbjct: 239 LASCILNTPADDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPF 298

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K    T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I +
Sbjct: 299 IKRVEQTISSFNQGGVRKGACVVTFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISN 358

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +F +RV ++   TLF P E   L++ YG++F +AY  YE ++   + K+     A  L  
Sbjct: 359 IFRERVNKDGYVTLFDPKETPLLNEEYGEKFNVAYIYYESKSSIRKKKI----KAKDLLF 414

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------- 592
           ++L +  ETG+ ++TF D  NI         V +SNLC EI + S               
Sbjct: 415 QILKVRQETGNLYLTFVD--NINEQNMVNRFVGASNLCQEIVIPSYPSKLIKEKYVINED 472

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                     S E  +CNL S+NL++      F  +K  S   T +R  DN+ID   + +
Sbjct: 473 GEYEIIQRKKSGEIGICNLVSVNLMSWV---NFSPEKKKSFCYTLLRGCDNIIDTQFYPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ + +N  +R IG+G++ + + L    I Y   EA+E  ++  + + +H   AS  LA+
Sbjct: 530 KEGEIANKKNRPIGIGVINYANLLASNKIKYTDKEALEFTNKVFDDLYYHIYEASNILAR 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERG Y +F  S W +G+ P   I LL   +         +  WD+L + +K  G+R S  
Sbjct: 590 ERGPYKTFNESKWKEGLTPF-HISLLNNNKKNNLNVSVDKEKWDKLAENIKNNGVRFSFH 648

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAPTAT       ++SI+P                +V+ F + E  Q      +++ +
Sbjct: 649 GAIAPTATSGKSVSATESIEP----------------IVDLFFIEEGIQT---LPSLVPN 689

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SG 882
           +K +              ++ +   + I    +IE A+ RQ++IDQ+QSLNLY  +P S 
Sbjct: 690 IKKN--------------REYYERCWNIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSA 735

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           K+L    + A  +GLKT YY+++
Sbjct: 736 KELWDDIQYAMDLGLKTLYYMKT 758


>gi|289596835|ref|YP_003483531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534622|gb|ADD08969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 785

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 243/893 (27%), Positives = 408/893 (45%), Gaps = 172/893 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHN 87
           ++VIKR+G +  F   KI +AIMKA  ++ G G   + RV + +++ + E  V R     
Sbjct: 8   MKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRVER----- 62

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                + +E IQD VE +LM  G+  + + Y+LYREER  +R A            K  I
Sbjct: 63  -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 105

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + D   ++ N+ +    V EA   L+D +  ++  ET + M++  +   L    IF   
Sbjct: 106 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 158

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            + +KE               ++E    V +KP+  +  E   L    F  + +EG    
Sbjct: 159 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 200

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
                 M  D  Y+ + LK + D                      +IE  +  F  V + 
Sbjct: 201 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 232

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
                                  ++ ++PTL N+ T+  QLS+CF+  VPD + GIF A+
Sbjct: 233 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 272

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA
Sbjct: 273 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 332

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               L   H D+ EF+  + +   + +   + N +  + D FM  + ++  + L +P   
Sbjct: 333 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN- 388

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                  G+E                    ++I A  +W  ++T  ++TG P + F D  
Sbjct: 389 -------GEEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEV 422

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N + P +H+G + S+N C E  L         CNLGSINL     N +  +D L  T+ T
Sbjct: 423 NRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 478

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY S EAVE+A++ M
Sbjct: 479 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 538

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           +FI+  +  AS++LA++RG + +++GS W                             W 
Sbjct: 539 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 569

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806
                 K + +RN+    IAPT TI+ I G S SI+P +   +++  + G +   VN   
Sbjct: 570 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 623

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +IDP+W +   +  QK+
Sbjct: 624 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 682

Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
           +D A  +++NL  D  S   ++  Y  AW +  K  T Y   S++   + K T
Sbjct: 683 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 734


>gi|58584952|ref|YP_198525.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419268|gb|AAW71283.1| Ribonucleotide reductase, alpha subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 594

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 203/644 (31%), Positives = 315/644 (48%), Gaps = 97/644 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A       ++ ++ A   Y+
Sbjct: 6   INHEKNGKLTDFGKAVLSDRYLI-----ENESYQDLFIRIANYY----SDNKEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++ A  + D FM+ V  +  W L SP                 Y 
Sbjct: 176 IRKPTGGDPNRKALNIHHAVIVDDRFMQAVESDLEWNLISP-----------------YN 218

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
           N          KV   I A  +W K+LT   ETG P+I F D  N   P+ +  +   + 
Sbjct: 219 N----------KVISTIKARDIWIKILTARIETGEPYIIFLDAINNNKPESYKRLNLDIK 268

Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  +    ++ +++L   I   +R LDNV
Sbjct: 269 MSNLCSEITLTTGYDHLNKLRTAVCCLSSVNLEYY---KEWRHNEL--FIEDIMRFLDNV 323

Query: 636 ID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  IN     I++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++ 
Sbjct: 324 LEDFINKAPDEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLR 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA+E+GA                          D   +N   R        
Sbjct: 384 KQADMVSKKLAEEKGA------------------------CLDAKEINLMERF------- 412

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                    ++ +AIAPTA+I+ I G  S  I+P   N++ +  ++G F V N FL   L
Sbjct: 413 ---------THKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +++  ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R  +I Q+
Sbjct: 464 AEKNQNNDKIWSSISTNEGSVQHLDFLNKHEKLTFRTAYELDQRWIIEHASDRTPYICQS 523

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+NL+L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 524 QSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADK 567


>gi|304320879|ref|YP_003854522.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303299781|gb|ADM09380.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 628

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 325/679 (47%), Gaps = 114/679 (16%)

Query: 261 EEGVKAR----LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
           EEG K R    L+ E ++D             RD      G   + DRY L       E 
Sbjct: 21  EEGTKQRPALKLVREVVVD-----------RSRDALLTDFGKTTMDDRYLLEG-----ES 64

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q  F RVA        +    A   Y+ +S   FM +TP L N G       SCFL  V
Sbjct: 65  YQDMFARVATAYG----DDADHAQRIYDYISKLWFMPATPVLSNGGASRGLPISCFLNAV 120

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L GI G   EN  LA   GG+G  W  VR +G  + G +G++ G+IPF++V +   +
Sbjct: 121 DDSLDGIVGTWNENVWLASNGGGIGTYWGGVRSIGESVKG-HGQTSGIIPFIRVMDSLTL 179

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           A++QG  R+G+   YL+  H ++EEFL++RK +GD  R++ +++    I D FM+ V ++
Sbjct: 180 AISQGSLRRGSAACYLDIHHPEIEEFLEIRKASGDFNRKSLNLHHGINITDAFMEAVARD 239

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + L SP                           GE  V R ++A  LW+K+L +  +T
Sbjct: 240 EEFGLLSPKT-------------------------GE--VLRTVNARKLWQKILEIRLQT 272

Query: 557 GHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLL 608
           G P++ F D  N  +   Q+ +G+ V +SNLC EI L++       E TAVC L S+N  
Sbjct: 273 GEPYLVFADTVNRSMAKHQRDLGLKVSTSNLCAEIMLHTGEDHLGQERTAVCCLSSVN-- 330

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKK--SNHTHRAIGLGLMGFQ 664
              A   F++    + I   +R LDNV++  IN    E AK   S    R++GLGLMGF 
Sbjct: 331 ---AEKYFEWKDEPTFIEDVMRFLDNVLEDFINRAPPEMAKAVYSARRERSVGLGLMGFH 387

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           S L  + +P+ S  A     +  + I   A +ASV LA+ERGA                 
Sbjct: 388 SFLQQMGVPFESAMAKSWNIKLFKHIRMGADAASVTLAEERGAC---------------- 431

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSID 783
                                   L    + I  R S+ MAIAPTA+I+ IC G S  I+
Sbjct: 432 ------------------------LDAAERGIKQRFSHKMAIAPTASISIICGGASPCIE 467

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y    +SG FTV N  L   L+++   D+   + +  ++GS+ +++ + D+ K 
Sbjct: 468 PIPANVYTHKTLSGSFTVKNRALEEMLEEKGCNDDDTWASILENEGSVQHLDCLTDEEKA 527

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYY 902
           +  TAFEID  W+++ A+ R  +I Q+QS+N++L     K  L  ++  AW  G+K+ YY
Sbjct: 528 VFKTAFEIDQRWVVDLAADRAPFICQSQSVNVFLPGDINKWDLHMLHWTAWEKGVKSLYY 587

Query: 903 LRSRSATSVEKSTLKGVDG 921
            RS+   SV+++   G  G
Sbjct: 588 CRSK---SVQRTQFAGGRG 603


>gi|114798532|ref|YP_759596.1| ribonucleotide-diphosphate reductase subunit alpha [Hyphomonas
           neptunium ATCC 15444]
 gi|114738706|gb|ABI76831.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 593

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 206/644 (31%), Positives = 310/644 (48%), Gaps = 99/644 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A  + E  +R    Y+ +S 
Sbjct: 12  RDSLLTDFGKKTLDDRYLLPG-----ETYQDMFARVATAYA-DDAEHGQR---IYDYISR 62

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L  I     EN  LA   GG+G  W  VR
Sbjct: 63  LWFMPATPVLSNGGADRGLPISCFLNQVGDSLDDIVETWTENVWLASNGGGIGTYWGNVR 122

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 123 SIGEKV-GQNGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEIRKT 181

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM+ V  +  + L SP                        
Sbjct: 182 SGDFNRKSLNLHHGINITDAFMEAVRNDEEFGLISPKS---------------------- 219

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
              GE  V + ++A  LW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 220 ---GE--VLKYVNARKLWQKLLELRMQTGEPYLLFTDTVNNALPAHQKRLGLKVTQSNLC 274

Query: 586 TEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +EITL     +  ++ TAVC L S+N     A    ++ K    +    R LDNV++   
Sbjct: 275 SEITLPTGVDHRGTDRTAVCCLSSVN-----AETFLEWSKEPMFLEDIFRFLDNVLEDFI 329

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 + +A  S    R++GLG+MGF S L  +++   S  A  +  +  + I   A +
Sbjct: 330 QRAPPEMARAVYSAKRERSVGLGVMGFHSFLQAMNVSMESATAKSLNLKIFKHIRQGADA 389

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV+LA+ERG     +             +G++A                          
Sbjct: 390 ASVKLAKERGPCEDAR------------DVGMMA-------------------------- 411

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R SN MA+APTA+I+ IC G S  I+P   N+Y    +SG FTV N  L   L  + L
Sbjct: 412 --RFSNKMAVAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNQQLETLLDTKGL 469

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               + + +  H+GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I Q+QSLNL
Sbjct: 470 NTNEIWTSILEHEGSVQHLDCLDAHEKDVFKTAFELDQRWIIELAADRTPFICQSQSLNL 529

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +L     K  L  ++  AW  GLK+ YY RS+   SV+++   G
Sbjct: 530 FLPGDINKWDLHMLHWTAWERGLKSLYYCRSK---SVQRAAFAG 570


>gi|237678831|emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]
          Length = 645

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 317/689 (46%), Gaps = 116/689 (16%)

Query: 284 DLKYER--DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           DLK +R  D      G   + DRY L       E+ Q  F RV+   A    +    A  
Sbjct: 55  DLKLDRTRDDLLTPFGKLTVTDRYLL-----AGELLQDMFARVSCAFA----DDVAHAQR 105

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            Y+ +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG+G
Sbjct: 106 LYDAMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIG 165

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             W  VR +G  + G  G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++EE
Sbjct: 166 TYWGNVRSIGEKVKG--GVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEE 223

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL++RK +GD  R++ +++    + D FM+ V     + L SP                 
Sbjct: 224 FLEIRKASGDFNRKSLNLHHGINVTDAFMRAVGAGTAFALRSP----------------- 266

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV- 578
                R  D     V R+I A  LW+++L    +TG P++ F D  N   P  Q+ +G+ 
Sbjct: 267 -----RTND-----VIREIDARQLWQRILENRLQTGEPYLLFIDTVNRSLPKHQRELGLK 316

Query: 579 VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           V +SNLC+EITL +       E TAVC L S+NL          +++    I   +R LD
Sbjct: 317 VSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNL-----ETWDQWNEKPGFIEDVMRFLD 371

Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           NV    I +    +++A+ +    R++GLG+MGF S L    IP  S  A          
Sbjct: 372 NVLTHFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMESVVAKSFNLNMFRK 431

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A +ASV LA+ERG                                        D L
Sbjct: 432 IRRDADAASVTLARERGPCP-------------------------------------DAL 454

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           ++ V     R S+ +AIAPTA+I+ IC G S  ++P   N+Y    +SG  +V N  L  
Sbjct: 455 ERGVMA---RFSHKIAIAPTASISIICGGTSACVEPIPANIYTHKTLSGAISVRNPHLAK 511

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L  +     A    +  H+GS+ +++ + +  K +  TAFEID  W++E A+ R  +I 
Sbjct: 512 LLAAKGADTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELAADRAAFIC 571

Query: 869 QAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG--VDGKLNA 925
           Q+QS+NLYL     K  L  ++  AW  G+K+ YY RS+   S+ ++   G   DG  NA
Sbjct: 572 QSQSINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSK---SISRAAFAGNIADGD-NA 627

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            P   P    H        T   EC  CQ
Sbjct: 628 AP---PQPQRH--------TDYEECLACQ 645


>gi|229582181|ref|YP_002840580.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
 gi|228012897|gb|ACP48658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
          Length = 838

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 232/830 (27%), Positives = 391/830 (47%), Gaps = 126/830 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F   +LE I+ +  S   +V+  IV ++   N+ D   ++     ++
Sbjct: 12  KIKVIKRDGRVDEF---KLEKILSKLSSVPDEVTDGIV-NDVQANVKDNAIDTRAIADIV 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R LIE    Y      FL+E  +R VL  +Y       +H                 
Sbjct: 68  --ERNLIENSLKYP-----FLMELAKRYVLARIY-------NHVFG-------------- 99

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFF 321
                      DF+          E+D    Y  L++L  RY L   N  R IE PQ  F
Sbjct: 100 ------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQMLF 143

Query: 322 MRVAMGLALKE-----TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            RVA  LA  E     +E E + +E  FY ++SS  F+ ++PTL NS TR   LS+CF+ 
Sbjct: 144 RRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFVI 203

Query: 375 TVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+K
Sbjct: 204 PVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMK 263

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
           V + +   + QGGKR+GA    +  WH D+E+F+  R  TG  +  +  + N +    D 
Sbjct: 264 VFDASTDVIKQGGKRRGANMGVMHAWHADIEDFI--RAKTGQLKDVQLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI------AYENYE--------RQADRG-- 532
           FM+ V +     L +P +      + G++ E        Y N E           ++G  
Sbjct: 322 FMEAVVKGESVPLINPRKTK----IAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 533 --------------------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL    +      + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD---QGVFPIDSIGLLAEVRDELA------MN 739
           FI +HA  AS+E+A+E+G + ++   L+    +     +S+  +AEV D+ +       +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G I +   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKIA-ESGIIDDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  Q+W D   ++++NL  +EP  + ++ +Y  AW +G+K     R +S
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPP-ETVEKVYLLAWKLGIKGITVYRDKS 781


>gi|239947954|ref|ZP_04699707.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922230|gb|EER22254.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 616

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 301/629 (47%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 33  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 83

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 84  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 143

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+ +R+ TG D  R
Sbjct: 144 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIGIRRPTGGDVNR 202

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 203 KALNIHHGIAITDEFMKAVENNTDFDLISP---------------------------ATK 235

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 236 KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 295

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 296 TGIDHLGKSRTAVCCLSSLN-LEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 354

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S        +  E+IS  A  AS+E+ +E+ 
Sbjct: 355 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEK- 413

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                       GV P           D L      R                 SN  AI
Sbjct: 414 ------------GVCP-----------DALDAGSNERF----------------SNKTAI 434

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 435 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 494

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 495 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 554

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 555 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 583


>gi|254168812|ref|ZP_04875653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622249|gb|EDY34823.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 244/893 (27%), Positives = 406/893 (45%), Gaps = 172/893 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
           ++VIKR+  +  F   KI +AIMKA  ++ G     + RV   +++ + E  V R     
Sbjct: 19  MKVIKRDSRIVDFSEDKIFQAIMKAMNSIGGYSEEDAQRVTWKVVEKIKESRVER----- 73

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                + +E IQD VE +LM  G+  + + Y+LYREER  +R A            K  I
Sbjct: 74  -----ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQA------------KKVI 116

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + D   ++ N+ +    V EA   L+D +  ++  ET + M++  +   L    IF   
Sbjct: 117 GVQDDLKLTVNAIK----VLEARYLLKDENGNVI--ETPRQMFERTARY-LALVDIFYED 169

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            + +KE               ++E    V +KP+  +  E   L    F  + +EG    
Sbjct: 170 DIYDKEGK-------------QKERKIDVEEKPEFLSIWEFNML-KRAFTYFSKEG---- 211

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
                 M  D  Y+ + LK + D                      +IE  +  F  V + 
Sbjct: 212 -----YMKVDFSYVLDSLKSKWD----------------------KIERVKNKFAEVML- 243

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
                                  ++ ++PTL N+ T+  QLS+CF+  VPD + GIF A+
Sbjct: 244 --------------------HRKYVPNSPTLMNANTKLGQLSACFVLPVPDSIEGIFNAV 283

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA
Sbjct: 284 KYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGA 343

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               L   H D+ EF+  + +   + +   + N +  + D FM+ + ++  + L +P   
Sbjct: 344 NMGVLSVHHPDILEFITSKDS---ENKVLSNFNISVAVTDEFMEALLRDDYYPLRNPRN- 399

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                  G+E                    +KI A  +W  ++T  ++TG P I F D  
Sbjct: 400 -------GEE-------------------VKKIKARQVWDLIITQAWKTGDPGIIFIDEV 433

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N R P +H+G + S+N C E  L         CNLGSINL     N +  +D L  T+ T
Sbjct: 434 NRRHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDDLRDTVHT 489

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY S EAVE+A++ M
Sbjct: 490 AVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVM 549

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           +FI+  +  AS++LA++RG + +++GS W                             W 
Sbjct: 550 KFINEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK 580

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFL 806
                 K + +RN+    IAPT TI+ I G S SI+P +   +++  + G +   VN   
Sbjct: 581 ------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVLDGQELLEVNPLF 634

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +IDP+W +   +  QK+
Sbjct: 635 EEIMKREGLYSEELMHKVA-ETGSVQHIDDVPENIKRLFRTAHDIDPVWHVRMQAAFQKY 693

Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
           +D A  +++NL  D  S   ++  Y  AW +  K  T Y   S++   + K T
Sbjct: 694 VDNAVSKTVNLRHD-ASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIYKGT 745


>gi|330834375|ref|YP_004409103.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
 gi|329566514|gb|AEB94619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
          Length = 820

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 194/717 (27%), Positives = 355/717 (49%), Gaps = 83/717 (11%)

Query: 264 VKARLLHESMMDFDLVYLANDL--------KY----ERDFAFEYLGLQILYDRYFLHING 311
           ++  L H+ +MD    Y+ + +        K+    ++D    Y  L++L  RY L    
Sbjct: 72  IEGSLEHQELMDLAKRYVLSRIYNHVFGKGKWKGIDDKDLLISYNALKVLEARYLLKNPE 131

Query: 312 S--RIEMPQAFFMRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +   +E PQ  F RVA  LA ++  ++++   +FY+++S+  F+ +TP L NSGTR   L
Sbjct: 132 TLRYVETPQMMFRRVASYLAGVEREKRKEIEEKFYDIMSTLRFVPNTPALMNSGTRLGIL 191

Query: 369 SSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           S+CF+  V D +      GI+  L+  A++ +  GG G D++ +R  G  +  T G + G
Sbjct: 192 SACFVLPVKDSMTTQNGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASG 251

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTA 482
            + F+K+ + +   V QGGKR+GA    +  WH D+E+F  +R  TGD +  +  + N +
Sbjct: 252 PVSFMKIFDVSTDVVKQGGKRRGANMGVMHVWHADIEDF--IRSKTGDLKDVQLQNFNIS 309

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE---IAYENYERQ----------- 528
             + D FM+ V +     L +P +      + G + E   +   NY R+           
Sbjct: 310 VGVYDYFMEAVMKEEQVPLITPRKTK----IKGTDHEYYIVKARNYMREDWVQEEILREL 365

Query: 529 -------ADRGEI--------------KVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                   D  +I               + R ++A  L+++++   +++G P + F D  
Sbjct: 366 EERGPVYLDESKIITVDEALAIAESEGAIIRWVNARNLFQQIVKGAWDSGDPGLLFIDEI 425

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLAS 623
           N R P  ++G + ++N C E  L S       CNLGS+NL             D++ L +
Sbjct: 426 NRRHPVWYLGKIQATNPCGEEPLLSWES----CNLGSLNLELFVKEKNGKPYIDWEDLTN 481

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            I+ AVR LDNV+D N + + + +++    R +GLG+MG   AL  L IPY S +A+ ++
Sbjct: 482 VIKYAVRFLDNVVDANRYPLPQIEQATKMTRKVGLGVMGLARALIKLGIPYDSVDAIYVS 541

Query: 684 DESMEFISFHAISASVELAQERGAYSSFK----GSLWDQGVFPIDSIGLLAEVRDELA-- 737
               +FI + A+ AS+ELA+E+G++ ++       +W+      + I  ++EV+ E +  
Sbjct: 542 YNLAKFIYYQAMKASIELAKEKGSFPAYDPVRYKDIWESAK-EFEDILAISEVKGEPSDY 600

Query: 738 ----MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               M   +++   ELK      G+RN+  +++APT TI+ I G S SI+P +   ++++
Sbjct: 601 AKAIMAEAAKIDISELKDLRMRYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRN 660

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G F  ++   +  L++ +L    +I  +    G +G+   +P  ++++  TA E++P
Sbjct: 661 VAVGKFMEIDPLFLEYLRKYELDTPEVIKKIA-ESGEVGDNPFVPKTIRRLFRTAHEVEP 719

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           M+ +   +  Q+W D   S  + L  E + + +  +Y  AW +G+K     R +S +
Sbjct: 720 MYHVLHQAAWQQWNDSGTSKTINLRSEETEETVGKVYLTAWRLGIKGITVYRDKSKS 776


>gi|258542156|ref|YP_003187589.1| ribonucleotide-diphosphate reductase subunit alpha [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633234|dbj|BAH99209.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636293|dbj|BAI02262.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639346|dbj|BAI05308.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642402|dbj|BAI08357.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645457|dbj|BAI11405.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648510|dbj|BAI14451.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651563|dbj|BAI17497.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654554|dbj|BAI20481.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 643

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 207/637 (32%), Positives = 301/637 (47%), Gaps = 103/637 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L +RY L   G      Q  F RVA          ++     Y+ +S 
Sbjct: 50  RDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGADAAHAQR----IYDYISK 100

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 101 HWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYWGNLR 160

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G ++ G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+ 
Sbjct: 161 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 219

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP + S                   
Sbjct: 220 TGGDPNRKALNLHHGVLVSDAFMRAVESDDEWALISPKDGS------------------- 260

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                   V RKISA  LW ++LT   E G P+I + D  N   P+ H   G+ V +SNL
Sbjct: 261 --------VIRKISARGLWIRILTARMEQGEPYIVYSDHVNNARPEHHKLAGLEVKTSNL 312

Query: 585 CTEITLNSSSE-----ETAVCNLGSINL--LAHFANN-QFDYDKLASTIRTAVRVLDNV- 635
           C+EITL +  +      TAVC L S+NL     + +N QF        I   +  LDNV 
Sbjct: 313 CSEITLPTGIDHHGKARTAVCCLSSLNLETWDQWKDNPQF--------IEDVMLFLDNVL 364

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID     + +AK +    R++GLG+MGF S L   ++P+ S  A     +  + I  
Sbjct: 365 QDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHSFLQSRNVPFESVVAKVWNRKIFKHIRE 424

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS +LA+ RG                 +  G++                       
Sbjct: 425 QADAASRKLAELRGPCPD------------AEEYGIME---------------------- 450

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L+
Sbjct: 451 ------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQKLLE 504

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++      + S +    GS+ +++ +    K +  TAFE+D  W++E A+ RQ +I QAQ
Sbjct: 505 EKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRQPFICQAQ 564

Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           S+NL+L     K+ L  I+  AW  GLK+ YY RS S
Sbjct: 565 SVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLS 601


>gi|34580443|ref|ZP_00141923.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
 gi|28261828|gb|EAA25332.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
          Length = 573

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 292/607 (48%), Gaps = 84/607 (13%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  F RV+   A    E ++ A + Y  +S   FM +TP L N GT      SCFL    
Sbjct: 7   QDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETD 62

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I     EN  LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A
Sbjct: 63  DSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIR-DKGHSSGIIPFIKVMDSMTLA 121

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQN 496
           ++QG  R+G+   YL   H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N
Sbjct: 122 ISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENN 181

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + L SP                              KV  K+ A  LW K+LT   ET
Sbjct: 182 TDFDLVSP---------------------------ATKKVVNKVRARDLWVKLLTTRIET 214

Query: 557 GHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLNS-----SSEETAVCNLGSINLL 608
           G P++ F D  N   P+ H  +G+ V  SNLC+EITL +         TAVC L S+N L
Sbjct: 215 GEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLN-L 273

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            ++   + D + + S +     VL++ I+    T+ +AK S    R++GLG+MGF S L 
Sbjct: 274 EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQ 333

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +  +P  S  A     +  E+IS     AS+E+ +E+GA                     
Sbjct: 334 MKKVPIESVMAKVWNKKIFEYISDETDKASIEIGKEKGA--------------------- 372

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQ 787
                D L      R                 SN  AIAPTA+I+ I G  S  I+P   
Sbjct: 373 ---CPDALDAGSNERF----------------SNKTAIAPTASISVIAGNASPGIEPFAA 413

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N +V+  ++G F V N  L   L+++   ++ + S +  H+GS+ ++  + ++ K++  T
Sbjct: 414 NSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKT 473

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSR 906
           A+EID  WLIE AS R  +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS 
Sbjct: 474 AYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRST 533

Query: 907 SATSVEK 913
           S    +K
Sbjct: 534 SIQRADK 540


>gi|330903418|gb|EGH33990.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 160

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 139/160 (86%), Gaps = 1/160 (0%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRT
Sbjct: 1   TNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRT 60

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIK 535
           HDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE   +  G+IK
Sbjct: 61  HDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIK 120

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQH
Sbjct: 121 LFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQH 160


>gi|330814260|ref|YP_004358499.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487355|gb|AEA81760.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 648

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 218/674 (32%), Positives = 313/674 (46%), Gaps = 113/674 (16%)

Query: 270 HESMMDF---DLVYLAND-------------LKYERDFAFEYLGLQILYDRYFLHINGSR 313
           +E++ D    DL  L+ND             +   RD      G   L DRY      + 
Sbjct: 25  NENLQDLKRPDLFSLSNDTELFQNEKGITIRIDRSRDSKLTDFGKATLVDRYL-----NE 79

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E  Q  F RVA   A      ++     YN +S+  FM STP L N+GT      SCFL
Sbjct: 80  GESYQDLFARVASTYADDNLHGQR----IYNYMSNLWFMPSTPVLSNAGTERGLPISCFL 135

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L GI     EN  LA   GG+G+ W  +R +G  + G  GK+ G++PF+KV + 
Sbjct: 136 NEASDSLNGIVDLWSENVWLAAKGGGIGSYWGNLRSIGEQV-GRVGKTSGIMPFIKVMDS 194

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKR 492
             +A++QG  R+G+   YL   H ++EEF+++R+ TG D  RR  +++    + D FM+ 
Sbjct: 195 LTLAISQGSLRRGSAACYLPIDHPEIEEFIEMRRPTGGDPNRRALNLHHGVLVTDAFMRA 254

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W L SP      HD                   G ++    +SA  LW ++LT 
Sbjct: 255 VELDEQWPLKSP------HD-------------------GTVQ--SSMSARNLWIRLLTA 287

Query: 553 LFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITL-----NSSSEETAVCNLGS 604
             ETG P+I F D  N   PQ H   G+ V +SNLC+EITL      S  + TAVC L S
Sbjct: 288 RVETGEPYIVFIDTVNRMIPQHHKLAGLTVKTSNLCSEITLPTGIDKSGRDRTAVCCLSS 347

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGL 660
           +NL  +   +++  +K+   +   ++ LDNV    I     +   A  +    R++GLG+
Sbjct: 348 LNLETY---DEWKDEKI--MLEDIMKFLDNVLTDFITRAPESFSDATYAAMRERSVGLGV 402

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF S L    IP  S  A    ++  + I     +ASV+LA+ERG          D G+
Sbjct: 403 MGFHSFLQKNSIPIESVMAKVWNNKMFKQIDKEVNAASVKLAEERGPCPDAA----DYGI 458

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVS 779
                                                 R SN  AIAPTA+I+ IC G S
Sbjct: 459 ME------------------------------------RFSNKTAIAPTASISIICGGAS 482

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P   N Y    +SG F V N +L   L + +   + + S +  + GSI ++  + D
Sbjct: 483 PGIEPVAANSYTHKTLSGSFNVRNKYLKQILAKYEKDTDEVWSSITTNQGSISHLNFLSD 542

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLK 898
             K +  TAFEID  WLI+ ++ R  ++ QAQSLN++L     KK L  I+ QAW  GLK
Sbjct: 543 LEKDVFKTAFEIDQRWLIDHSADRTPYVSQAQSLNVFLPADVHKKDLHQIHFQAWKKGLK 602

Query: 899 TTYYLRSRSATSVE 912
           + YY RS+S    E
Sbjct: 603 SMYYCRSKSIQRAE 616


>gi|68171691|ref|ZP_00545050.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658153|ref|YP_507276.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998883|gb|EAM85576.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599610|gb|ABD45079.1| ribonucleoside-diphosphate reductase, alpha subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 595

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 208/644 (32%), Positives = 307/644 (47%), Gaps = 97/644 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++       ++  + A   Y+
Sbjct: 6   VDYERDNNLTAFGKAVLSDRYLLEN-----EDYQQLFVRISEYY----SDNPEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSQLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + + FMK V  +  W L SP + S               
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQS--------------- 220

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
                       V   I A  +W K+LT   ETG P+I F D  +   P+ +  +   + 
Sbjct: 221 ------------VLFTIKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIK 268

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLCTEITL +     +   TA+C L S+NL  +    Q+  + L   I   +R LDNV
Sbjct: 269 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYY---EQWKDNSLF--IEDVMRFLDNV 323

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+     +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I 
Sbjct: 324 LTDFIEKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIR 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            HA +AS  +A E+G+    +    D G+                               
Sbjct: 384 KHADAASYNIAMEKGSCLDAQ----DAGIVE----------------------------- 410

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L
Sbjct: 411 -------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K +   +E + S +  ++GS+ +++ + ++ K I  TA+E+D  W+IE  S R K+I QA
Sbjct: 464 KLKGKDNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQA 523

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+N++L     K+ L  I+  AW  GLK+ YY RS+S    +K
Sbjct: 524 QSVNIFLPANVHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADK 567


>gi|114568950|ref|YP_755630.1| ribonucleotide-diphosphate reductase subunit alpha [Maricaulis
           maris MCS10]
 gi|114339412|gb|ABI64692.1| ribonucleoside-diphosphate reductase, alpha subunit [Maricaulis
           maris MCS10]
          Length = 637

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 206/647 (31%), Positives = 313/647 (48%), Gaps = 91/647 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RVA   A  +TE  +R    Y+ +S 
Sbjct: 53  RDAFLTEFGKKTLEDRYLLPG-----ESYQDMFARVATAYA-DDTEHAQR---LYDYISQ 103

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL +V D L  I G   EN  LA   GG+G  W  VR
Sbjct: 104 LWFMPATPVLSNGGADRGLPISCFLNSVGDSLDDIVGTWTENVWLASNGGGIGTYWGDVR 163

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  I G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 164 SIGEKI-GEIGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 222

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM+ V  +                   +EFE+      + 
Sbjct: 223 SGDFNRKSLNLHHGLNISDAFMEAVRDD-------------------EEFEL------KS 257

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
              GE  V + ++A  LW+K++ +  +TG P+I + D  N   P  Q+ +G+ V  SNLC
Sbjct: 258 PKSGE--VVKTVNARKLWQKIIELRLQTGEPYIIYSDTVNRALPAHQRKLGLKVRQSNLC 315

Query: 586 TEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            EI L      +  E TAVC L S+N  A +   + + D +    R    VL + ID   
Sbjct: 316 AEIMLPTGFDQNGKERTAVCCLSSLN-AAKYMEWKDNPDFIEDIYRFLDNVLQDFIDRAP 374

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +++A  S    R++GLGLMG  + L  ++ P+ S  A     +  + I   A +ASV+
Sbjct: 375 AEMDRAVYSAIQERSVGLGLMGMHTLLQQMNAPFESAMAKSWNLKLFKHIRTAADAASVK 434

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERGA    + S                                         +  R 
Sbjct: 435 LAEERGACPDAEAS----------------------------------------GVKARF 454

Query: 761 SNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           S+ +AIAPTA+I+ IC GVS  I+P   N+Y    +SG  TV N  L   L+ + L    
Sbjct: 455 SHKLAIAPTASISIICGGVSAGIEPIPANVYTHKTLSGSTTVKNPQLEAVLEAKGLNTPG 514

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           M + +   +GS+ ++E + +  K    TAFEID  W+IE A+ R  ++ Q+QSLN++L  
Sbjct: 515 MWASILEAEGSVQHLECLDEHEKATFRTAFEIDQRWVIEHAADRTPYVCQSQSLNIFLPG 574

Query: 880 PSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
              K  L  ++  AW  G+K+ YY RS+   S++++   G + K +A
Sbjct: 575 DVDKWDLHMLHWSAWEKGVKSLYYCRSK---SIQRAAYAGSEKKSDA 618


>gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 767

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 210/781 (26%), Positives = 368/781 (47%), Gaps = 51/781 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +  +   +    K +Y G++ S 
Sbjct: 2   AELKKHLHVQKRDGTIEKVHYDAITARIKQLCYGLEKIDPAATAIHVIKKFLYAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A   ++ T+    P+Y K+ AR          ++ ++K+ ++     +  ++  Y  
Sbjct: 62  LDDAAAETAITMATIHPDYEKLAARI--------AISNLHKQTKEKFSDVIDDIHKNY-- 111

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            Y   G+   +    M   D   L   + YE D+  +Y G + L   + +      IE P
Sbjct: 112 NYWNIGLSDDIYEIIMKHKD--RLNEAINYENDYILDYFGFKYLIQHFLVKSENQTIERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--- 374
           Q  FM+VA+G+   + +    A+E Y +LS    M S P +        +L+   ++   
Sbjct: 170 QHLFMKVAVGIHGDDIDS---AIETYKMLSQKLCMFS-PVVMQLQPAARKLNVSVISHYS 225

Query: 375 --TVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
              + D + GI+  +++ ++ +  YS  +      +R  G +I G+ G+S G +P +   
Sbjct: 226 VAMIADSIDGIYDTSIRLSSFILPYSS-VALHVHKIRAAGTYIQGSYGESSG-LPLMLKQ 283

Query: 432 NDTAVAVNQGGKRKGA---VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            D+ V  ++  +R  +   V  Y E WH D+ + +D  + T     +  +   A WIPD 
Sbjct: 284 YDSIVRNSETLERPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDE 343

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+  SPD    L D++GKEF+  Y+ YE ++      V R+I A  LW +
Sbjct: 344 FMRRVQNDQMWSFMSPDHCPGLIDVHGKEFDNLYKEYELKSKSF---VMRQIEAKKLWSQ 400

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607
           ++    ETG P + FKD CN +S + H+G +  +    +    ++S+E A C   SI++ 
Sbjct: 401 IIQSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVD 460

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS----NHTHRAIGLGLMGF 663
           +   + N FD+ KL  T +     L+ +ID N   + K K+          AIG+G+ G 
Sbjct: 461 MFLTSENIFDFSKLKETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQWAIGIGVQGL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
                 +  P+ + EA  +  +  E I + A+ AS ELA   G Y +F  S   +G+   
Sbjct: 521 ADLFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQF 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D    L  V+       ++   W+ LK ++   G+RNS     + T   + ICG   SI+
Sbjct: 581 D----LWNVKP------SNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIE 630

Query: 784 PSYQNL---YVKSNMSG--DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           P   N+   Y+    S   +  VVN  L+ +L  R LWD+ +   L  + GS+  I+ +P
Sbjct: 631 PLDTNVKRRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLP 690

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +DLK+++ T +EID   LI  A+ R  +IDQ+Q+ +L + +     +  +    W MGLK
Sbjct: 691 EDLKQLYKTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLK 750

Query: 899 T 899
           T
Sbjct: 751 T 751


>gi|15604373|ref|NP_220889.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           prowazekii str. Madrid E]
 gi|3861065|emb|CAA14965.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) [Rickettsia
           prowazekii]
 gi|292572127|gb|ADE30042.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           prowazekii Rp22]
          Length = 607

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 304/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSHYA----ENKQHAQKLYEYMSQMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYWGNVRSINEAIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           ++ +++    I D FM+ V  N  + L SP                              
Sbjct: 194 KSLNIHHGITITDEFMQAVENNMDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 227 KVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +      +  TAVC L S+N L ++   + D + + S +     VL++ I+   +T+ +A
Sbjct: 287 TGIDHLGNSRTAVCCLASLN-LEYYEVWKDDKEFIHSIMLFLDNVLEDFINKAPNTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K +    R++GLG++GF S L +  IP  S  A     +  E+IS     AS+E+ +++G
Sbjct: 346 KYAAFRERSVGLGVIGFHSFLQMKKIPIESVMAKVWNKKIFEYISAEVDKASIEIGKDKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDSGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNIFLHGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWKKGIKSLYYCRSTSIQRADK 574


>gi|302390649|ref|YP_003826470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
 gi|302201277|gb|ADL08847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
          Length = 772

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 176/588 (29%), Positives = 288/588 (48%), Gaps = 78/588 (13%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A +FY++++   FM ++PTL N+G    QLS+CF+  V D + GIFGA++  A++ K  G
Sbjct: 59  AEKFYDMMAELKFMPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFGAIKNAALIHKSGG 118

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R  GA +  T G++ G + F+KV N    AV QGG+R+GA    L   H D
Sbjct: 119 GTGMSFSRLRPKGATVRSTGGEASGPVSFMKVFNAATEAVKQGGRRRGANMGILRVDHPD 178

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EF+  +    +D     + N +  I D FM+ +  +  + L  P+             
Sbjct: 179 ILEFIRCK----EDNNELTNFNISVAITDKFMETLKNDGTYELVDPNTG----------- 223

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                           KV  ++ A  ++  ++ M ++ G P I F D  N ++P  H+G 
Sbjct: 224 ----------------KVTGRLKAREVFDLIVDMAWKNGEPGILFIDRVNAKNPTPHIGQ 267

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDN 634
           + S+N C E  L         CNLGSINL          N+ DY++L   +  AVR LD+
Sbjct: 268 IESTNPCGEQPLLPFES----CNLGSINLSKFVKEGSTGNEIDYEELKQVVHMAVRFLDD 323

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID+N + + + ++    +R IGLG+MGF   L  L IPY S EAV++A+E M FI   A
Sbjct: 324 VIDVNKYPLPEIEQMTKANRKIGLGVMGFADMLIKLGIPYDSEEAVKLAEEVMGFIQREA 383

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA+ RGA+ +F GS++D                          +P   L     
Sbjct: 384 RKASEDLAKTRGAFPNFPGSVYD--------------------------VPGGPL----- 412

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQR 813
              +RN+    IAPT TI+ I G S  I+P +   + ++ +     + +      E+++R
Sbjct: 413 ---LRNATVTTIAPTGTISIIAGCSSGIEPVFALAFERNVLDKQRLIEIYPLFEEEMRRR 469

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+   ++ ++    GS+  I  IP+++K++  TA +I P W +   +  QK+ D A S 
Sbjct: 470 GLYSPELMEEV-LEKGSLKGIAGIPEEVKRVFVTAHDISPEWHVRIQAAFQKYTDNAVSK 528

Query: 874 NLYLDEPSGKK-LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKG 918
            +     + ++ +  +Y  A+ +G K  T Y   SR    ++K T +G
Sbjct: 529 TVNFPHSATREDVKKVYLLAYELGCKGVTVYRDGSREEQVLKKGTRQG 576


>gi|254455714|ref|ZP_05069143.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082716|gb|EDZ60142.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 645

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 292/635 (45%), Gaps = 89/635 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +D      G   L DRY  H      E  Q  F RVA   A    +    A   YN +S+
Sbjct: 55  KDANLTDFGKATLKDRYLGHN-----ESFQDLFARVASSYA----DDNLHAQRIYNYISN 105

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 106 LWFMPATPVLSNGGTKRGLPISCFLNEASDSLGGILDLWSENVWLAAKGGGIGSYWGNLR 165

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  I G  GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+++R+ 
Sbjct: 166 SIGEKI-GKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIDHPEIEEFIEMRRP 224

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V  +  W L SP +                     
Sbjct: 225 TGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD--------------------- 263

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNL 584
               G I+  + ISA  LW ++LT   ETG P+I + D  N   PQ H      V +SNL
Sbjct: 264 ----GTIQ--QTISARNLWIRLLTARIETGEPYIIYIDTVNRLIPQHHKLANLTVKTSNL 317

Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           C+EITL         + TAVC L S+N L  +   + D D +   +R    VL + I+  
Sbjct: 318 CSEITLPTGIDKDGHDRTAVCCLSSLN-LEKYDEWKDDPDMIGDVMRFLDNVLSDFINKA 376

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               + AK S    R++GLG+MGF S L    IP  S  A     +  + I      AS 
Sbjct: 377 PDQFKDAKYSAGRERSVGLGVMGFHSFLQKNRIPLESVMAKSWNKKIFKQIDAQVNQASK 436

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA+ERGA                                  +   + E          R
Sbjct: 437 DLAEERGACPD------------------------------AAEYGYQE----------R 456

Query: 760 NSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            SN  AIAPTA+I+ IC G S  ++P   N Y    +SG F V N +L   L+     D+
Sbjct: 457 FSNKTAIAPTASISIICGGASPGVEPIAANSYTHKTLSGSFNVRNRYLEEILESHGKNDD 516

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
              S +  + GS+ +++ + D  K +  TAFE++  W+IE +  R  +I QAQS+NL+L 
Sbjct: 517 ETWSTITTNQGSVSHLDFLTDLEKDVFKTAFELNQNWIIELSGDRTPFISQAQSVNLFLP 576

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
               KK L  I+  AW  GLK+ YY RS+S    E
Sbjct: 577 ADVHKKELHKIHFDAWKKGLKSLYYCRSKSIQRAE 611


>gi|51473695|ref|YP_067452.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           typhi str. Wilmington]
 gi|51460007|gb|AAU03970.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
          Length = 607

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 303/629 (48%), Gaps = 89/629 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +     + E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLM-----KGEDFQDLFARVSSYYA----ENKQHAQKLYEYMSQMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYWGNVRSINEAIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 -DKGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           ++ +++    I D FM+ V  N  + L SP                              
Sbjct: 194 KSLNIHHGITITDEFMQAVENNMDFDLVSP---------------------------ATK 226

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P  H  +G+ V  SNLC+EITL 
Sbjct: 227 KVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPAHHKKLGLQVKMSNLCSEITLP 286

Query: 592 S-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+N L ++   + D + + S +     VL++ I+   +T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLSSLN-LEYYEVWKDDKEFIHSIMLFLDNVLEDFINKAPNTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K +    R++GLG++GF S L +  +P  S  A     +  E+IS     AS+E+A+++G
Sbjct: 346 KYAAFRERSVGLGVIGFHSFLQMKKVPIESVMAKVWNKKIFEYISSEVDKASIEIAKDKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                          D L      R                 SN  AI
Sbjct: 406 A------------------------CPDALDSGSNERF----------------SNKTAI 425

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN++L     KK 
Sbjct: 486 THEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNIFLHGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 546 LNNIHFKAWKKGIKSLYYCRSTSIQRADK 574


>gi|70607111|ref|YP_255981.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
 gi|68567759|gb|AAY80688.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
          Length = 837

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 202/692 (29%), Positives = 338/692 (48%), Gaps = 88/692 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKET-----EKEKRAVE 341
           RD    Y  L++L  RY L   N  R IE PQ  F RVA  +A  E      EK+ + +E
Sbjct: 109 RDLLISYNALKVLEARYLLKDPNTLRYIETPQMMFRRVARHIANVEKLYGKDEKQVKEIE 168

Query: 342 --FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLA 394
              Y ++S+  F+ +TP L NSGTR   LS+CF+  V D +      GI+ AL+  A++ 
Sbjct: 169 DKLYEMMSNLKFIPNTPALMNSGTRLGILSACFVIPVRDAMSTPNGDGIYDALRAMALVH 228

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG G D++ +R  G  +  T G + G + F+++ + +   V QGGKR+GA    +  
Sbjct: 229 QQGGGTGFDFSELRPKGDIVASTAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMHA 288

Query: 455 WHIDVEEFLDLRKNTGDDRRRTH--DMNTANWIPDLFMKRVTQNAGWTLFSPDEV----- 507
           WH DV++F+  R  TG+  R TH  + N +  + D FM  V +     L +P +      
Sbjct: 289 WHADVQDFI--RAKTGE-LRDTHLQNFNISVGVYDYFMNAVERGEAVPLINPRKTRIPGK 345

Query: 508 ----------SDLHDLYGKEF---EIAYENYERQADRGEI--------------KVFRKI 540
                       +HD   +E+   E+  +      D   I               + + +
Sbjct: 346 DWDYYMTNARGYMHDESVQEYILKELEEKGGSVYLDESRIITVDEALVIAEKENAIVQWV 405

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           +A  L+ +++   +++G P + F D  N R P  ++G ++++N C E  L         C
Sbjct: 406 NARQLFDEIVKGAWDSGDPGLLFIDEINRRHPVWYIGKINATNPCGEEPLLPWES----C 461

Query: 601 NLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NLGSI+L             D+D L   I+  VR LDNVID N + +++ +++    R +
Sbjct: 462 NLGSISLEKFVVEKDGKMSIDWDGLVEAIKYGVRFLDNVIDANRYPLKQIEEATKKTRKV 521

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---- 712
           GLG+MG    L  L IPY S +A+ I+ +  +FI +HA+  S++LA+E+G++ ++     
Sbjct: 522 GLGVMGLARMLIKLGIPYDSVDALYISYQLAKFIYYHALKTSIDLAKEKGSFPAYDPYYY 581

Query: 713 ----------GSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
                     GSL +       P D +  L EV D        RL +  LK+     G+R
Sbjct: 582 HDIWESARDFGSLLEVSNIKDKPSDYVKKLTEVVD--------RLDFSLLKEERIKFGLR 633

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS  +++APT TI+ I G S SI+P +   +V++   G F  ++   +  L++ +L D  
Sbjct: 634 NSTVVSVAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEIDPLFLEYLRKYELDDPE 693

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877
           ++  +    G++     IP  +KK+  TA E+ P + +   +  Q+W D   ++++NL  
Sbjct: 694 VVQKIA-ETGTVAENPFIPRTMKKLFRTAHEVPPEYHVLHQAMWQQWNDSGTSKTINLKS 752

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +EP  + ++ +Y  AW +G+K     R RS +
Sbjct: 753 EEPP-ETVEKVYMLAWKLGIKGVTVYRDRSKS 783


>gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 766

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 211/788 (26%), Positives = 364/788 (46%), Gaps = 66/788 (8%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKNMYDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +  +   +    K ++ G++ S 
Sbjct: 2   AELKKHLYVQKRDGTIEKVHYDEIIARIKQLCYGLEKIDPAATAIHVIKKCLFAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE-------VLTTVYKKPQKATHHEMQC 250
           L+ A    + T+    P+Y K+ AR  +  L ++       V+  ++K            
Sbjct: 62  LDDAAAEMAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDIHKNDD--------- 112

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
                   Y   G+   +    M + D   L   + YE D+  +Y G + L   + +   
Sbjct: 113 --------YWNTGLSDDIYEIIMKNKD--RLNEAINYENDYILDYFGFKYLTQNFLVKSE 162

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
              IE PQ  FM+VA+ +   + +    A+E Y +LS    M S P +        +L+ 
Sbjct: 163 NQTIERPQHLFMKVAVSIHGDDIDS---AIETYKMLSQKLCMFS-PVVMQLQPAARKLNV 218

Query: 371 CFLT-----TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             ++      + D + GI+  L   +        +      +R  G +I G+NGKS G +
Sbjct: 219 SVISHYSVAMIADSIDGIYDTLNRLSTFILPYSSVAVHVHKIRAAGTYIKGSNGKSSG-L 277

Query: 426 PFLKVANDTAVAVNQGGKRKGA---VCAYLETWHIDVEEFLD-LRKNTGDDRRRTHDMNT 481
           P +    D+ V   +  +R  +   V  Y E WH D+ + +D +RK T  D +   +   
Sbjct: 278 PLMLKQYDSMVHCKETLERPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIK-LKNSQL 336

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A WIPD FM+RV  +  W+  SPD    L D++G+EF+  Y+ YE ++      V R+I 
Sbjct: 337 ALWIPDEFMRRVENDQMWSFMSPDHCPGLIDVHGEEFDNLYKEYELKSKSF---VMRQIE 393

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW +++    ETG P + FKD CN +S + H+G +  +    +    ++S+E A C 
Sbjct: 394 AKKLWSQIIQSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCT 453

Query: 602 LGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK----SNHTHRAI 656
             SI++ +   + N FD+ KL  T +     L+ +I+ N   + K  +          AI
Sbjct: 454 TASISVDMFLTSENIFDFSKLKETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAI 513

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G       +  P+ + EA  +  +  E I + A+ AS ELA + G Y ++  S  
Sbjct: 514 GIGIQGLADLFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPT 573

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+   D    L  V+       ++   W+ LK ++   G+RNS     + T   + I 
Sbjct: 574 SKGLLQFD----LWNVKP------SNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIF 623

Query: 777 GVSQSIDPSYQNL---YVKSNMS--GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           G   SI+P   N+   Y+    S   +  VVN +L+ +L  R LWDE +I +L  + GSI
Sbjct: 624 GNVNSIEPLDTNVKRRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSI 683

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             I  +PDDLK+++ T +EID   L+  A+ R  +IDQ+Q+ +L + + +   +  ++  
Sbjct: 684 QEI-NLPDDLKQLYRTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHIS 742

Query: 892 AWLMGLKT 899
            W MGLKT
Sbjct: 743 TWKMGLKT 750


>gi|307295358|ref|ZP_07575197.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306878861|gb|EFN10080.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 645

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 207/645 (32%), Positives = 309/645 (47%), Gaps = 101/645 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L         P   +  +   +A    +    A   Y+ +S 
Sbjct: 59  RDALLTDFGKDTLQDRYLL---------PGESYQDLFARVAAAYADDADHAQRVYDYISR 109

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 110 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 169

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 170 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 228

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM  V                     GKEF  A  + + Q
Sbjct: 229 SGDFNRKALNLHHGVLLTDEFMAAVRD-------------------GKEF--ALRSPKDQ 267

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
           + RG       ++A AL++K++ +   TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 268 SVRG------SVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTSNLC 321

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      +++  DK    +   +R LDNV    I
Sbjct: 322 SEITLPTGRDHIGNDRTAVCCLSSLNLETW---DEWKDDK--QFVEDVMRFLDNVLQDYI 376

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++GLG+MGF S L    +P+    A        + IS  A  
Sbjct: 377 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHISEKAAE 436

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++LA ERG          D GV                                    
Sbjct: 437 ASMQLAVERGPCPDAA----DMGV------------------------------------ 456

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F + N +L   L  + 
Sbjct: 457 -MERFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFAIKNPYLEKLLVAKA 515

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
               A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 516 KDSTAVWNSILEKGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQSLN 575

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           L++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G
Sbjct: 576 LFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 617


>gi|162147607|ref|YP_001602068.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542239|ref|YP_002274468.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786184|emb|CAP55766.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529916|gb|ACI49853.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 665

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 212/681 (31%), Positives = 314/681 (46%), Gaps = 99/681 (14%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L +RY L       E  Q  F RV+          ++     Y+ +S 
Sbjct: 69  RDALLTPFGKATLDNRYLL-----EGESYQDLFGRVSSYYGADPGHAQR----LYDYMSR 119

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 120 HWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWGNLR 179

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G ++ G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+ 
Sbjct: 180 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 238

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V ++  W L SP + + +                 
Sbjct: 239 TGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPKDGAHI----------------- 281

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNL 584
                     RKISA +LW ++LT   E G P+I + D  N   P+ H   G+ V +SNL
Sbjct: 282 ----------RKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVKTSNL 331

Query: 585 CTEITL-----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C EITL     +  +E TAVC L S+NL         ++      I   +  LDNV    
Sbjct: 332 CAEITLPTGMDHHGNERTAVCCLSSLNL-----ETWDEWKDDPRFIEDVMLFLDNVLQDF 386

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID     +E+AK +    R++GLG+MGF S L   +IP+ S  A        + I   A 
Sbjct: 387 IDRAPDDMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQAD 446

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+ RG                    G +                          
Sbjct: 447 LASRKLAELRGPCPDAA------------EYGFME------------------------- 469

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN +AIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L+  L  + 
Sbjct: 470 ---RFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLLKLLIDKG 526

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E + S +    GS+ +++ +    K +  TAFE+D  W++E A+ R  +I QAQS+N
Sbjct: 527 QNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRAGYICQAQSIN 586

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L+L     K+ L  I+  AW  G+K+ YY RS S    +  T+  V GK++ +       
Sbjct: 587 LFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRAD--TVSNVLGKVDVMADEPSAP 644

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
           +      P+S  +  EC  CQ
Sbjct: 645 APAPASPPASSNNYDECLACQ 665


>gi|220933052|ref|YP_002509960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
 gi|219994362|gb|ACL70965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
          Length = 766

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 189/639 (29%), Positives = 315/639 (49%), Gaps = 98/639 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKE 336
           D+K  R+       +++L  RY     +G  IE P+  F RVA  +A       ++ E++
Sbjct: 3   DIKLTRN------AIKVLKARYLKRDASGELIETPEEMFKRVANNIASANEKYGEDPERD 56

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           K A  F+NL++S  F+ ++PTL N+     QLS+CF+  + D + GIF AL+  A++ K 
Sbjct: 57  KEA--FFNLMASLDFLPNSPTLMNADNDLQQLSACFVLPIEDSMDGIFDALKYTALIQKS 114

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG G  ++ +R     +  T G + G I F+++ +     V QGGKR+GA    L   H
Sbjct: 115 GGGTGFSFSRLRPKSDIVKTTGGVASGPISFMEIFDAATNTVKQGGKRRGANMGILRVDH 174

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EF+  +     D  R ++ N +  + D FM+ V ++  + L +P            
Sbjct: 175 PDIMEFITAKA----DENRLNNFNISVAVTDEFMEAVKKDEEYDLVNP------------ 218

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                     R       +V  ++ A  ++ K++ M  + G P I F D  N  +P  H+
Sbjct: 219 ----------RSG-----QVVGQLRAREVFNKIVEMAHKNGEPGIIFIDEINRHNPTPHL 263

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRV 631
           G + S+N C E  L         CNLGSIN L+H   N     + D++KL +T+RTA R 
Sbjct: 264 GEIESTNPCGEQPLLPYE----ACNLGSIN-LSHMVKNEGDKPEVDFEKLENTVRTATRF 318

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + +E+ K+  +++R IGLG+MG+   L  L IPY S  AV +A++ M+FI+
Sbjct: 319 LDNVIDMNRYPLEQIKEMVYSNRKIGLGVMGWSDLLIRLGIPYNSDRAVNLAEKVMKFIN 378

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +   S ++A++RG++ + +GS++D+                                 
Sbjct: 379 EISHDESHKIARKRGSFPNIEGSIYDK--------------------------------- 405

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 MRN+    IAPT +I+ I G S  I+P +   Y +  +      V+ +     +
Sbjct: 406 -----SMRNATTTTIAPTGSISIIAGCSSGIEPLFAINYERHVLDDTLIEVHPYFEKIAR 460

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +R  + E +++ +    GSI  +  IP+D++KI  TA +I+P W I+  +  QKW+D A 
Sbjct: 461 ERGFYSEELMAKVAER-GSIQGMSEIPEDVQKIFVTAHDIEPEWHIKMQAAFQKWVDNAV 519

Query: 872 SLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRS 907
           S  + +  E + + +  +Y  A+ +  K  T Y   SRS
Sbjct: 520 SKTVNFRHEATKEDVARVYTLAYDLKCKGVTIYRDGSRS 558


>gi|295691247|ref|YP_003594940.1| ribonucleoside-diphosphate reductase subunit alpha [Caulobacter
           segnis ATCC 21756]
 gi|295433150|gb|ADG12322.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           segnis ATCC 21756]
          Length = 625

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 213/680 (31%), Positives = 317/680 (46%), Gaps = 108/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+ +S 
Sbjct: 40  RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRVYDYMSR 90

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 91  LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 150

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 151 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 209

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM  V     + L SP                        
Sbjct: 210 SGDFNRKSLNLHHGINITDEFMHAVRDGHKFGLRSPKTN--------------------- 248

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
                 +V R++ A ALW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 249 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDSVNNAMPSFQRELGLKVRQSNLC 302

Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EI L++ +     E TAVC L S+N     A    ++    + I   +R LDNV    I
Sbjct: 303 SEIMLHTGTDHLGNERTAVCCLSSVN-----AETFLEWRDHPTFIEDVMRFLDNVLQDFI 357

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D        A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  
Sbjct: 358 DRAPDAAASAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 417

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++L +E+G                              A +R S              
Sbjct: 418 ASIKLGEEKGPCPD--------------------------AADRGSV------------- 438

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L N L ++  
Sbjct: 439 -ERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLENLLAEKGQ 497

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+   +  H+GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N+
Sbjct: 498 NTDAVWGSILEHEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 557

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  G+K+ YYLRS+   SV+++   G + K+ A        +
Sbjct: 558 FLPGDVDKWDLHMLHWTAWERGVKSLYYLRSK---SVQRAAYAGAEDKVAA--------T 606

Query: 935 THSLGIPSSCTSDTECEVCQ 954
           T    +P     D EC  CQ
Sbjct: 607 TSGFDVPEKTDYD-ECLACQ 625


>gi|291279559|ref|YP_003496394.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
 gi|290754261|dbj|BAI80638.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
          Length = 768

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 181/628 (28%), Positives = 304/628 (48%), Gaps = 79/628 (12%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350
           L +L  RY      G+ +E P+  F RVAM +AL      K  + EK A EF++++ S  
Sbjct: 21  LTVLRKRYLKKDEKGNIVETPKGMFQRVAMNIALADLNYDKNADIEKTAKEFFDIMVSLK 80

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  ++ +R  
Sbjct: 81  FLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSFSRLRPK 140

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F+ V +     + QGG R+GA    L   H D+ EF+  +K   
Sbjct: 141 DDVVKTTKGVSSGPVSFMTVFDSATETIKQGGTRRGANMGILRVDHPDIMEFIYAKK--- 197

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+ +  + N +  + + FM+ V +   + L +P +                        
Sbjct: 198 -DKTKLTNFNLSVAVTEKFMEAVIKGEDYPLINPKDG----------------------- 233

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KV +K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N C E  L
Sbjct: 234 ----KVVKKLNAKEVFDQMVKLAWEGGDPGIVFIDRINKDNPTPKEGEIESTNPCGEQPL 289

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     N +  +D+L   I TAV  LDNVID+N + I + ++  
Sbjct: 290 LPYES----CNLGSINLGKFVKNKKILWDELKKVIHTAVHFLDNVIDMNNYPIPQIEEMT 345

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MG+   + LL IPY S +A+++A++ M FI     +ASV+LA++RG++ +
Sbjct: 346 KKNRKIGLGVMGWADMMALLEIPYNSEDALKLAEKVMSFIQEEGRNASVKLAEKRGSFPN 405

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           FK S++ +  F +                                  +RN+    IAPT 
Sbjct: 406 FKDSIYPEKGFKM----------------------------------LRNATVTTIAPTG 431

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+ I G S  I+P +   + ++ +  D  V  + +  E+ +R+ +    + +     G 
Sbjct: 432 TISIIAGASSGIEPYFAIAFYRNVLDNDKLVEVNPIFKEIAKREGFYSDELMEKIAESGH 491

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
           + +I+ +P+  K++  TA EI P+W ++  +  Q++ D A S  + + +E + + +  +Y
Sbjct: 492 LEDIDEVPEKWKRVFVTAHEISPIWHVKMQAAFQRYTDNAVSKTVNFPNEATVEDVREVY 551

Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKST 915
             A+  G K  T Y   SR    +   T
Sbjct: 552 LLAYKEGCKGITIYRDGSREGQVINVGT 579


>gi|310831538|ref|YP_003970181.1| putative ribonucleotide reductase large subunit [Cafeteria
           roenbergensis virus BV-PW1]
          Length = 922

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 24/427 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++ +T  ++Y G++  +L+    +    +     +YA +  R  +  L +E + T  +K 
Sbjct: 54  IVKKTITSIYPGITTKELDNQSAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEK- 112

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +  +  +      Y   +IE   K R     ++D           Y RD++F++ G++ 
Sbjct: 113 MELINDNLHI----YDSEWIEFIKKHRNKLNKIID-----------YNRDYSFDFFGIKT 157

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           +   Y   ++G  IE PQ  FMRVA   +L      ++ ++ YNL+S  +F  ++PTLFN
Sbjct: 158 MERTYITKLDGHLIERPQDVFMRVA---SLVHCGDLQKTIDSYNLMSKKYFTHASPTLFN 214

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G +   L SCFL    D + GI     + A ++K+ GG+G   + VR  G+ I  TNG 
Sbjct: 215 AGNKKGNLVSCFLLGTEDSMTGISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGH 274

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G++P L+V N     VNQ G+RKG+   YLE  H D+ +FL+LRKNTG +  R  D+ 
Sbjct: 275 SDGIVPMLQVYNSICRYVNQSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLF 334

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A W+ DLFM +V  N  W LF PD+   L+D+YG E+E  Y  Y       E K  +KI
Sbjct: 335 LALWVSDLFMNQVKLNNDWYLFCPDKAPGLNDVYGDEYETLYWKY-----VSEEKYNKKI 389

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  ++T  FETG P++ +KD  N +S Q+++G++ SSNLC EI   S S ETA C
Sbjct: 390 KARKLWEAIMTAQFETGSPYMLYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAAC 449

Query: 601 NLGSINL 607
           NL SI L
Sbjct: 450 NLASIAL 456



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 69/371 (18%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G    L LL +PYA
Sbjct: 545 YDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRVPYA 604

Query: 676 SPEAVEIADESMEFISFHAISA-------------------------------------- 697
           S  A++I ++    I   A++A                                      
Sbjct: 605 SKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDNFEC 664

Query: 698 ---------------SVEL--AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                          S EL   Q  GAYS+F+GS + +G        L   + +   +N 
Sbjct: 665 YPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEG-------KLQYHLWNRTPINI 717

Query: 741 TSRL---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +    WD L   +K  G RNS   A+ PTA+ + + G  +S +P   N+Y +  ++G
Sbjct: 718 STLIEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 777

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T++E+   ++I
Sbjct: 778 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 836

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST- 915
           +  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+ + +  K T 
Sbjct: 837 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 896

Query: 916 -LKGVDGKLNA 925
            L     K+N+
Sbjct: 897 LLNNSQNKINS 907


>gi|302381297|ref|YP_003817120.1| ribonucleoside-diphosphate reductase, subunit alpha [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191925|gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 631

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 214/685 (31%), Positives = 322/685 (47%), Gaps = 104/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +L   RD      G + L DRY L       E  Q  F RV+   A    +    A   Y
Sbjct: 37  ELDRTRDDLLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAYA----DDADHAQRVY 87

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM STP L N G       SCFL +V D L GI     EN  LA   GG+G  
Sbjct: 88  DYMSKLWFMPSTPVLSNGGANRGLPISCFLNSVQDSLDGIQRVWNENVSLASNGGGIGTY 147

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 148 WGGVRSIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVHHPEIEEFL 206

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM+ V   + + L SP + +               
Sbjct: 207 EIRKPSGDFNRKSLNLHHGINITDEFMEAVKAGSDFALLSPKDQA--------------- 251

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VH 580
                       V R++ A +LW+K+L +  +TG P++ F D  N + P  Q+ +G+ V 
Sbjct: 252 ------------VIRRVDARSLWQKILEIRLQTGEPYLIFSDTVNRQMPRHQRELGLKVK 299

Query: 581 SSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++       + TAVC L S+N     A    ++ +    +   +R LDNV
Sbjct: 300 QSNLCSEIMLHTGPDHLGIDRTAVCCLSSVN-----AEMFLEWREEPRFVEDVMRFLDNV 354

Query: 636 ID--INCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  I     E A    S    R++GLGLMGF S L    + + S  A        + + 
Sbjct: 355 LEDFITRAPPEMAAAVYSAKRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLR 414

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  ASV+LA+E+G                                      P ++  +
Sbjct: 415 READKASVKLAEEKG--------------------------------------PCEDAAE 436

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           R   +  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L
Sbjct: 437 R--GVMERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLL 494

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  +A+ S +  H+GS+ ++  + DD K I  TAFE+D  W++E ++ R   I QA
Sbjct: 495 DGYGANTDAVWSSILEHEGSVQHLTMLNDDEKGIFKTAFELDQRWVVELSADRSPEICQA 554

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+NL++     K  L  ++  AW  G+K+ YYLRS+   SV+++   G + K    P  
Sbjct: 555 QSINLFIPGDVNKWDLHMLHWSAWERGVKSLYYLRSK---SVQRAAFAGAEDKAEVEP-- 609

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           DPN        P   T   EC  CQ
Sbjct: 610 DPNQPDLFSAAP---TDYDECLACQ 631


>gi|27375118|ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27348254|dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 212/685 (30%), Positives = 307/685 (44%), Gaps = 112/685 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G   L DRY L   G      Q  F RV+   A    +    A   Y+
Sbjct: 136 LDRSRDDLLTSFGRLTLTDRYLLAGEGL-----QDMFARVSCAFA----DNVAHAQRLYD 186

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG+G  W
Sbjct: 187 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 246

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G    G  G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 247 GNVRSIGEKARG--GVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 304

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    + D FM  V     + L SP                    
Sbjct: 305 IRKASGDFNRKSLNLHHGINVTDEFMCAVGAGTAFALRSPKTN----------------- 347

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHS 581
                     +V R+I A  LW+++L    +TG P++ F D  N   P  Q+ +G+ V +
Sbjct: 348 ----------EVVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVST 397

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC+EITL++       E TAVC L S+NL          +++    I   +R LDNV 
Sbjct: 398 SNLCSEITLSTGIDHRGEERTAVCCLSSLNL-----ETWDQWNEEPGFIEDVMRFLDNVL 452

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              I +    +++A+ +    R++GLG+MGF S L    IP     A          +  
Sbjct: 453 THFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMEGTLAKSFNLNMFRKLRR 512

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +ASV LA+ERG                                        D L++ 
Sbjct: 513 EADAASVALARERGPCP-------------------------------------DALERG 535

Query: 753 VKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           V     R S+ +AIAPTA+I+ IC G S   +P   N+Y    +SG  +V N  L   L 
Sbjct: 536 VMA---RFSHKIAIAPTASISIICGGTSACTEPIPANIYTHKTLSGAISVRNPHLAKVLA 592

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +     A    +  HDGS+ +++ + +  K I  TAFEID  W++E A+ R   I Q+Q
Sbjct: 593 AKGADTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELAADRAALICQSQ 652

Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-VDGKLNAVPVT 929
           S+NLYL     K  L  ++  AW  G+K+ YY RS+   S+ ++   G + G  +A P  
Sbjct: 653 SINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSK---SISRAAFAGKIAG--DATPTQ 707

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
            P             T   EC  CQ
Sbjct: 708 QPARQR---------TDYEECLACQ 723


>gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
 gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
          Length = 524

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 238/437 (54%), Gaps = 40/437 (9%)

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +N  WTLF P+E   L D+YG EFE  YE YE++  RG+    + + A  LW  +L 
Sbjct: 1   RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEKEG-RGK----KTVKAQKLWYAILE 55

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LA 609
              ETG+P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L    
Sbjct: 56  AQTETGNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFV 115

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                ++D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   
Sbjct: 116 DPIRGEYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLA 175

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ SPEA ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   + 
Sbjct: 176 LRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVT 235

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK+ +   G                 I G ++  +P   N+
Sbjct: 236 P----------TDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNI 268

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +
Sbjct: 269 YSRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVW 328

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A
Sbjct: 329 EISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAA 388

Query: 909 T-----SVEKSTLKGVD 920
           +     +V++  LK  D
Sbjct: 389 SAPIQFTVDQEQLKVAD 405


>gi|294013208|ref|YP_003546668.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
 gi|292676538|dbj|BAI98056.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
          Length = 731

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 204/645 (31%), Positives = 310/645 (48%), Gaps = 101/645 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L         P   +  +   +A    +    A   Y+ +S 
Sbjct: 145 RDALLTDFGKDTLQDRYLL---------PGESYQDLFARVAAAYADDADHAQRVYDYISR 195

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W  VR
Sbjct: 196 LWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWGNVR 255

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 256 GIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEIRKT 314

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R+  +++    + D FM+ V                     GKEF  A  + + Q
Sbjct: 315 SGDFNRKALNLHHGVLLTDEFMEAVRD-------------------GKEF--ALRSPKDQ 353

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLC 585
           + RG       ++A AL++K++ +   TG P+I F D  N   P+ H  +G+ V +SNLC
Sbjct: 354 SVRG------SVNARALFQKLVEVRLATGEPYIVFNDTVNRTMPKHHRDLGLKVSTSNLC 407

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EITL +      ++ TAVC L S+NL      +++  D+    +   +R LDNV    I
Sbjct: 408 SEITLPTGRDHIGNDRTAVCCLSSLNLETW---DEWKDDR--QFVEDVMRFLDNVLQDYI 462

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK S    R++GLG+MGF S L    +P+    A        + ++     
Sbjct: 463 DRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHVNEKVNE 522

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++LA ERG          D GV                                    
Sbjct: 523 ASMQLAVERGPCPDAA----DMGV------------------------------------ 542

Query: 757 GMRNSNC-MAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            M   +C MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L  + 
Sbjct: 543 -MERFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKA 601

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
               A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 602 KDSTAVWNSILEKGGSVQHLDFLSQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLN 661

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           L++     K  L  ++ +AW +G+K+ YYLRS+   SV+++   G
Sbjct: 662 LFIPADVEKWDLLMLHYRAWELGIKSLYYLRSK---SVQRAGFAG 703


>gi|39996969|ref|NP_952920.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|39983857|gb|AAR35247.1| ribonucleoside-diphosphate reductase, putative [Geobacter
           sulfurreducens PCA]
 gi|298505986|gb|ADI84709.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sulfurreducens KN400]
          Length = 743

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 184/619 (29%), Positives = 296/619 (47%), Gaps = 79/619 (12%)

Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFH 350
           + +L  RY     G  + E P   F RVA  +A  +   +K+A       +FY L++SF 
Sbjct: 19  VTVLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFE 78

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  
Sbjct: 79  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPA 138

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  +    
Sbjct: 139 HDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK---- 194

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           DD++  ++ N +  + + FM+ V ++A + L +P +      L  +              
Sbjct: 195 DDQKHLNNFNISVGLTEAFMEAVERDADYDLINPRDGKPCGTLNAR-------------- 240

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I   A W+         G P I F D  N  +P  HVGV+ S+N C E  L
Sbjct: 241 ----KVFSRIVKQA-WK--------NGEPGIIFLDRLNKDNPTPHVGVIESTNPCGEQPL 287

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     N   ++D+L   +R AV  LDNVI++N + + +  +  
Sbjct: 288 LPYES----CNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMT 343

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MG+   L LL IPY SP+A+ + ++ M FI+      S ELA  RG++ +
Sbjct: 344 RANRKIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPN 403

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS++D                      R S  P            +RN+    IAPT 
Sbjct: 404 FAGSIYD----------------------RASEGP------------IRNATVTTIAPTG 429

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I   S  ++P +   +++  +  +  V VN       +QR  + E ++  +  H G
Sbjct: 430 TISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEVARQRGFYSEELMQKIARH-G 488

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
           +I ++  IP+D++KI  TA +I P   IE  +  QK+ D A S  + + +  + + ++ +
Sbjct: 489 TIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNSAAIEDVEKV 548

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           YR A+  G K     R  S
Sbjct: 549 YRLAYKSGCKGVTIYRDGS 567


>gi|269958630|ref|YP_003328417.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
 gi|269848459|gb|ACZ49103.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
          Length = 618

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 201/645 (31%), Positives = 304/645 (47%), Gaps = 107/645 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G  +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 33  RDNNLTSFGKAVLSDRYLLDD-----EDYQQLFVRVSQ----YYSDNDEHAQRLYDYMSK 83

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 84  LWFMPATPILSNGGTGRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 143

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  ++GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 144 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 202

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP                       
Sbjct: 203 TGGDPNRKALNIHHGVLLTDEFMRAVEQDKPWDLVSP----------------------- 239

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584
             DR  I   R   A  LW K+LT   ETG P++ F D  N   P   + +G+ V  SNL
Sbjct: 240 -KDRCVISTVR---ARDLWIKILTTRVETGEPYVVFVDTVNKHKPDIYKELGLEVKMSNL 295

Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST---IRTAVRVLDNV- 635
           CTEITL +  +      TA+C L S+NL          YD  +     +   +R LDNV 
Sbjct: 296 CTEITLATGEDHLGRSRTAICCLASLNLEY--------YDMWSGEPLFVEDVMRFLDNVL 347

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              I+     IE+A+ +    R+IG+G+MGF S L    +P+ S  A     +  E I  
Sbjct: 348 TDFINKAPPEIERARYAAMRERSIGVGVMGFHSFLQSKMVPFESFAASVWNKKIFEHIKR 407

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A   S +LA E+G                           D +  N+  R         
Sbjct: 408 QADEVSRKLAMEKGP------------------------CPDAVDANKMERF-------- 435

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                    + ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L 
Sbjct: 436 --------VHKLSIAPTASISIISGNTSPGIEPYAANVFTHKTLTGSFVVRNKFLQKLLA 487

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            + L ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQ
Sbjct: 488 SKGLDNDQVWSSISTNEGSVQHLDFLTEQEKLVFRTAYEMDQRWIVEHSSDRAPYVCQAQ 547

Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           S+N++L  P+G   + L  I+  AW  G+K+ YYLRS+S    +K
Sbjct: 548 SVNIFL--PAGVHKRYLHKIHFLAWKKGVKSLYYLRSKSVQKADK 590


>gi|206889598|ref|YP_002247982.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741536|gb|ACI20593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 741

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 312/641 (48%), Gaps = 84/641 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-----EKE--K 337
           K ++ F      +++L  RY   + +G  IE P+  F RVA  +A  +T     EKE  +
Sbjct: 3   KIKQTFELTDNAIEVLKRRYLKKNEDGILIETPEELFTRVATAIAQIDTIYGKSEKEVYR 62

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
              EF+ L++S  F+ ++PTL N+GT   QLS+CF+  V D + GIF A++  A++ K  
Sbjct: 63  TKEEFFELMTSLRFLPNSPTLMNAGTPLGQLSACFVLPVEDSMEGIFDAVKYAAIIHKSG 122

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG G  ++ +R  G  +  T G S G + F+ V +    AV QGG+R+GA    L   H 
Sbjct: 123 GGTGFSFSRLRPKGDVVGSTKGISSGPVSFMSVFDSATEAVKQGGRRRGANMGLLRVDHP 182

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ EF+  +    DD  +  + N +  + + FMK V  +  + L +P             
Sbjct: 183 DILEFITCK----DDLTKFTNFNISVGLTEEFMKAVINDEEYELINP------------- 225

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                    R       K+ +++ A  ++  ++   ++ G P I F D  N  +P   +G
Sbjct: 226 ---------RSG-----KIVKRLKAKEVFDLIVHQAWKNGEPGIVFLDRINAANPTPSLG 271

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + ++N C E  L         CNLGSINL     +N  D++ L  T+  AV  LDNVID
Sbjct: 272 EIEATNPCGEQPLLPYES----CNLGSINLAKMVKDNSVDWELLKDTVWKAVHFLDNVID 327

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + +   +++   +R IGLG+MG+   L  L IPY S EA+ +A+E M+FI      A
Sbjct: 328 ANKYPLSLIEQNTKANRKIGLGVMGWADMLIQLKIPYNSKEALNLAEELMKFILHEGRLA 387

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ERG + ++  S++                             +D++        
Sbjct: 388 SKELAKERGTFPNYAKSIY-----------------------------YDKMP------- 411

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLW 816
           +RN+    IAPT T++ I G S  I+P +   + ++ M G   V VN +   E+++  +W
Sbjct: 412 LRNATITTIAPTGTLSIIAGCSSGIEPLFALCFARNVMDGTRLVEVNPYFKKEMEKIGIW 471

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +++ +D     GSI  I+ IP+++KKI  TA E+ P   I   +  Q+++D A S  + 
Sbjct: 472 SDSL-ADKIAETGSIQGIKEIPEEIKKIFVTAHEVSPSEHIRMQAAFQQYVDNAVSKTVN 530

Query: 877 L-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914
           L ++ + + +  +Y  A+ +G K  T Y   SR    ++K 
Sbjct: 531 LPNQATEEDVREVYLLAYRLGCKGVTVYRDGSRHGQVIQKG 571


>gi|240102479|ref|YP_002958788.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
 gi|239910033|gb|ACS32924.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
          Length = 911

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 232/908 (25%), Positives = 402/908 (44%), Gaps = 133/908 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V   G        D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIRWAIKRAMLEV---GVH-----DDKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R              K KI+ 
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREE------------KKKIL- 103

Query: 150 DDGTLISFNSKRLEMIVEE-ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   N  RL+ I +  + + L+ ++S+ ++                +  +I S R 
Sbjct: 104 --------NKDRLDEIDKRFSLNALRVLASRYLIRNE-------------KGEIIESPRE 142

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L E+    A +      E+        VY K  K   HE      +Y+  + EE      
Sbjct: 143 LFERVATLAVIPDLLYDER--------VYDKNGK---HEQDLSRVKYYLEHFEE------ 185

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
                  FD  Y     K  + + FE L      + Y       R+++    F+ +    
Sbjct: 186 -------FDGRYSIGRFKLNK-YHFERL-----VNLYRELAEKGRMKVSIDEFLGMLENG 232

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A  + E E    E++ L++   FM +TP L NSG     LS+CF+  + DD+  I  A  
Sbjct: 233 AFDDYESE--VEEYFRLMTGQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAH 290

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA 
Sbjct: 291 DVAMIQKSGGGTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 350

Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              LE WH D+E+F+  + KN G +     +++   W  + F + +     + L +P   
Sbjct: 351 MGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALRDGKRYPLVNP--- 405

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                              R  ++      ++I   +L+ ++  M +    P + F D  
Sbjct: 406 -------------------RTGEK-----VKEIDPKSLFEELAFMAWSKADPGVIFFDVI 441

Query: 568 NIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYD 619
           N R+  +    G + ++N C E  L     E   CNL SIN LA F          FD+D
Sbjct: 442 NRRNVLEPAKGGPIRATNPCGEEPLY----EYESCNLASIN-LAKFVKYDDEGKPYFDWD 496

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           + A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E 
Sbjct: 497 EYAYVIQKVAKYLDNAIDVNRFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 556

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
                ++ E+++F+A   SVE A++RG +  ++ S +  G  P++               
Sbjct: 557 FAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSRYKDGELPVEG----------FYHR 606

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F
Sbjct: 607 EIWNLPWDELVEEIKKHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 666

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V+     ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  +  I +
Sbjct: 667 YYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILA 726

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914
            +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    SVE  
Sbjct: 727 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGE 786

Query: 915 TLKGVDGK 922
             K V  K
Sbjct: 787 KRKRVPAK 794


>gi|329888547|ref|ZP_08267145.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
 gi|328847103|gb|EGF96665.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
          Length = 599

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 220/689 (31%), Positives = 323/689 (46%), Gaps = 108/689 (15%)

Query: 283 NDLKYER--DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           N LK +R  D      G + L DRY L       E  Q  F RVA   A    +    A 
Sbjct: 2   NGLKLDRTRDALLTEFGKKTLEDRYLLAG-----ESYQDMFARVATAYA----DDADHAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+ +S   FM +TP L N G       SCFL +V D L GI     EN  LA   GG+
Sbjct: 53  RVYDYMSKLWFMPATPVLSNGGADRGLPISCFLNSVNDSLDGIQNVWNENVSLASNGGGI 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  W  VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++E
Sbjct: 113 GTYWGGVRSIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIE 171

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL++RK +GD  RR+ +++    I D FM+ V     + L SP                
Sbjct: 172 EFLEIRKPSGDFNRRSLNLHHGINITDAFMEAVRDGKPFDLISPKN-------------- 217

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV 578
                      GE++  + + A  LW K+L +  +TG P++ F D  N + PQ    +G+
Sbjct: 218 -----------GEVR--KTVDARNLWTKILEIRMQTGEPYLIFSDTVNRQMPQHQKDLGL 264

Query: 579 -VHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            V  SNLC+EI L++       E TAVC L S+N     A    ++ +    I   +R L
Sbjct: 265 SVKQSNLCSEIMLHTGLDHKGVERTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFL 319

Query: 633 DNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV++        ++  A  S    R++GLGLMGF S L    + + S  A        +
Sbjct: 320 DNVLEDFITRAPSSMAAAVYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFK 379

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +   A  AS  LA+E+G          D+GV                            
Sbjct: 380 HLRREADKASRTLAEEKGPCPDAA----DRGVME-------------------------- 409

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                     R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L 
Sbjct: 410 ----------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLQ 459

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           + L ++ +  EA+ S +  ++GS+ +++ + DD K I+ TAFE+D  W+IE A+ R   I
Sbjct: 460 DLLGEKGIDTEAVWSSILENEGSVQHLDALSDDEKAIYKTAFELDQRWVIELAADRTGDI 519

Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            QAQSLNL++     K  L  ++  AW  GLK+ YYLRS+   SV+++   G + K    
Sbjct: 520 CQAQSLNLFIPGDVNKWDLHMLHWSAWERGLKSLYYLRSK---SVQRAAFAGAEDKKEE- 575

Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
              DPN       + S   +D  EC  CQ
Sbjct: 576 -EIDPNQPD----LFSIARTDYDECLACQ 599


>gi|111073617|emb|CAL29480.1| ribonucleoside-diphosphate reductase alpha chain [Wolbachia
           endosymbiont of Onchocerca volvulus]
          Length = 609

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 197/646 (30%), Positives = 309/646 (47%), Gaps = 101/646 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A       ++ ++ A   Y+
Sbjct: 21  INHEKNVKLTSFGKAVLLDRYLI-----ENESYQDLFIRIASYY----SDNKEHAQRLYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 72  YISNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G+ GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 132 GNLRSIGESVKGS-GKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 190

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++ A  + D FM+ V ++  W L SP                 + 
Sbjct: 191 IRKPTGGDPNRKALNIHHAVIVNDEFMQAVERDLEWDLISP-----------------HS 233

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
           N          KV   + A  +W K+L    ETG P+I F +  N   P+ +  +   + 
Sbjct: 234 N----------KVISTVKARDIWVKILIARVETGEPYIIFLNAINNNKPESYKKLNLDIK 283

Query: 581 SSNLCTEITLNSSSE-----ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLC+EITL +  +      TAVC L S+NL     + +++F        I   +R LD
Sbjct: 284 MSNLCSEITLTTGYDHLNKPRTAVCCLSSVNLEYYEEWKDSEF-------FIEDIMRFLD 336

Query: 634 NV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           NV    I+   + I++AK S    R+IGLG+MGF S L    +P+ S  A +      + 
Sbjct: 337 NVFEDFINKAPNEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKRIFKH 396

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A   S +LA+E+GA                          D   +N   R      
Sbjct: 397 LREQADIISKKLAEEKGA------------------------CLDAKEINLMERF----- 427

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                      ++ +AIAPTA+I+ I G  S  I+P   N++ +  ++G F V N FL  
Sbjct: 428 -----------THKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQK 476

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L +++  ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I 
Sbjct: 477 LLAKKNQDNDKVWSSISTNEGSVQHLDFLNEHEKLTFKTAYELDQRWIIEHASDRTPYIC 536

Query: 869 QAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           Q+QS+NL+L     K+ L  I+  AW   LK+ YY RS S    +K
Sbjct: 537 QSQSVNLFLPPNIHKRYLHKIHMLAWKKNLKSLYYCRSLSIQRADK 582


>gi|167957457|ref|ZP_02544531.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 296

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 192/297 (64%), Gaps = 3/297 (1%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N+R+   + G +H SNLCTEITL    +  AVCNL SINL  H   N++D+ +L 
Sbjct: 1   WKDTINVRALNNNTGTIHLSNLCTEITLPQDKDNIAVCNLVSINLSRHLNGNEWDWRRLE 60

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF   L  L + Y S E+ E+
Sbjct: 61  DSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFTDVLERLRLAYDSEESYEL 120

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
            D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID+I +L + RD ++ ++R 
Sbjct: 121 IDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPIDTIDILEKNRDIDVKISRN 180

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +DP +  ++ +S ++G F  
Sbjct: 181 SSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLDPRFTQIFSRSTLNGKFLE 239

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           VN  LV ELK R LW E    +L  + G I NIE IPD++K ++ T+F+I P   IE
Sbjct: 240 VNPNLVRELKDRSLWSEVK-DELLINQGDIQNIEAIPDEIKSVYKTSFQILPYAFIE 295


>gi|16127722|ref|NP_422286.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus CB15]
 gi|13425218|gb|AAK25454.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           crescentus CB15]
          Length = 619

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 208/680 (30%), Positives = 315/680 (46%), Gaps = 108/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+ +S 
Sbjct: 34  RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSR 84

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 85  LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 144

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 145 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 203

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM  V     + L SP                        
Sbjct: 204 SGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTN--------------------- 242

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
                 +V R++ A ALW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 243 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQSNLC 296

Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EI L++ +     E TAVC L S+N     A    ++    + I   +R LDNV    I
Sbjct: 297 SEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNVLQDFI 351

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D        A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  
Sbjct: 352 DRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 411

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++L +E+G                        +  D  +M R                
Sbjct: 412 ASIKLGEEKGP---------------------CPDAADRGSMERF--------------- 435

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L+++  
Sbjct: 436 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQ 491

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N+
Sbjct: 492 NTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 551

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  G+K+ YYLRS+   SV+++   G + K  A        +
Sbjct: 552 FLPGDVDKWDLHMLHWMAWERGVKSLYYLRSK---SVQRAAYAGAEDKAEA--------A 600

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                +P     D EC  CQ
Sbjct: 601 AGGFDVPEKTDYD-ECLACQ 619


>gi|167648616|ref|YP_001686279.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter sp.
           K31]
 gi|167351046|gb|ABZ73781.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           sp. K31]
          Length = 616

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 211/680 (31%), Positives = 318/680 (46%), Gaps = 108/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+ +S 
Sbjct: 31  RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSK 81

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM STP L N G       SCFL  V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 82  LWFMPSTPVLSNGGAERGLPISCFLNAVSDSLDGILGVWNENVWLAANGGGIGTYWGGVR 141

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL++RK 
Sbjct: 142 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIFHPEIEEFLEIRKA 200

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM  V     + L SP                        
Sbjct: 201 SGDFNRKSLNLHHGISITDEFMHAVRDGHKFGLRSPKT---------------------- 238

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
              GE  V R++ A ALW+K+L +  +TG P++ F D  N   P  QQ +G+ V  SNLC
Sbjct: 239 ---GE--VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPKHQQELGLKVRQSNLC 293

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EI L++      ++ TAVC L S+N     A    ++      I   +R LDNV    I
Sbjct: 294 SEIMLHTGVDHLGNDRTAVCCLSSVN-----AETFLEWRDHPMFIEDIMRFLDNVLQDFI 348

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D        A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  
Sbjct: 349 DRAPDAAATAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 408

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ + +E+G                        +  D  +M R                
Sbjct: 409 ASITIGEEKGP---------------------CPDAADRGSMERF--------------- 432

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L+++  
Sbjct: 433 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKVLEEKGH 488

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W++E A+ R   + Q+QS+N+
Sbjct: 489 NTDAVWGSILENEGSVQHLDFLSQDDKDVYKTAFELDQRWVVELAADRTPEVCQSQSVNI 548

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++ QAW  G+K+ YYLRS+   SV++++  G D     V +  P   
Sbjct: 549 FLPGDVDKWDLHMLHWQAWERGVKSLYYLRSK---SVQRASYAGSD-----VALAGP--- 597

Query: 935 THSLGIPSSCTSDTECEVCQ 954
            +    PS  T   EC  CQ
Sbjct: 598 ANGFDAPSK-TDYEECLACQ 616


>gi|221236543|ref|YP_002518980.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus NA1000]
 gi|220965716|gb|ACL97072.1| ribonucleoside-diphosphate reductase alpha chain [Caulobacter
           crescentus NA1000]
          Length = 627

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 208/680 (30%), Positives = 315/680 (46%), Gaps = 108/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+ +S 
Sbjct: 42  RDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVYDYMSR 92

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W  VR
Sbjct: 93  LWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYWGGVR 152

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 153 SIGEKVKG-QGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 211

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM  V     + L SP                        
Sbjct: 212 SGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTN--------------------- 250

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
                 +V R++ A ALW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 251 ------EVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQSNLC 304

Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +EI L++ +     E TAVC L S+N     A    ++    + I   +R LDNV    I
Sbjct: 305 SEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNVLQDFI 359

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D        A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  
Sbjct: 360 DRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADK 419

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS++L +E+G                        +  D  +M R                
Sbjct: 420 ASIKLGEEKGP---------------------CPDAADRGSMERF--------------- 443

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L+++  
Sbjct: 444 ----SHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQ 499

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N+
Sbjct: 500 NTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNV 559

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  G+K+ YYLRS+   SV+++   G + K  A        +
Sbjct: 560 FLPGDVDKWDLHMLHWMAWERGVKSLYYLRSK---SVQRAAYAGAEDKAEA--------A 608

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                +P     D EC  CQ
Sbjct: 609 AGGFDVPEKTDYD-ECLACQ 627


>gi|11499254|ref|NP_070492.1| ribonucleotide-diphosphate reductase subunit alpha [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648891|gb|AAB89584.1| ribonucleotide reductase (nrd) [Archaeoglobus fulgidus DSM 4304]
          Length = 752

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 300/616 (48%), Gaps = 79/616 (12%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCS 354
           +L  RY L  + G+ IE P+    RVA  +A  E       E+ A +F+ LL    FM +
Sbjct: 10  VLRKRYLLKDDEGNVIETPEEMCWRVARAIAKAEENYGNNAEEWAEKFFKLLWEQKFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  +   G  R 
Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLNVHHPDIEEFIKAKWEEGVLR- 188

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +    D FM+ + ++  + L +P                           GE 
Sbjct: 189 ---NFNISVAATDAFMEALKKDDDYDLINPRT-------------------------GE- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V R++ A  ++  ++   +  G P + F D  N  +P  HVG + ++N C E  L    
Sbjct: 220 -VVRRVPARKIFNLIVEGAWRNGEPGMIFIDTINRFNPTPHVGQIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSINL     + + D+D L   +  AVR LD+VID+N + I + ++    +R
Sbjct: 279 S----CNLGSINLAKFVKDGEIDWDGLREVVWIAVRFLDDVIDVNSYPIPEIEQMTKANR 334

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MG+   L LL+IPY S EA+++A++ M+FI   +  AS +LA+ERG + ++KGS
Sbjct: 335 KIGLGVMGWADMLFLLNIPYDSDEAIQLAEKVMKFIQEESHRASQQLAEERGVFPNWKGS 394

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W++                                   K I MRN+    IAPT TI+ 
Sbjct: 395 VWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419

Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           I G S  I+P +   Y ++N+    +F  +N      L++R L+ + +I  +    GSI 
Sbjct: 420 IAGCSSGIEPIFALAYKRTNILDGEEFFEINEIFEEVLRRRGLYTDELIEKVA-EKGSIQ 478

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQ 891
            IE IP+D++++   A +I P W +   +  QK+ D A S  + +   + +K ++  +  
Sbjct: 479 EIEEIPEDIRRVFKCALDISPEWHVRMQAAFQKYTDNAVSKTINMPNSATRKDVEKAFLL 538

Query: 892 AWLMGLKTTYYLRSRS 907
           A+ +G K     R  S
Sbjct: 539 AYELGCKGITVYRDGS 554


>gi|315425463|dbj|BAJ47126.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 834

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 179/628 (28%), Positives = 298/628 (47%), Gaps = 67/628 (10%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           +Y+L+    F+ ++PTLFN+GT   QLS+CF+  V DD+  I    +E A++ K  GG+G
Sbjct: 233 YYDLMVGKRFLPNSPTLFNAGTVLGQLSACFVLDVEDDISSIMRTAEEAAVIFKTGGGVG 292

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  G  +  T G + G + F+++ +     V QGG+R+GA    L   H D+++
Sbjct: 293 INYSKLRPEGDVVSSTGGVASGPVSFMRIVDTVTDVVKQGGRRRGANIGILNINHPDIDK 352

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G       + N +  +   F K   ++  + L +P + S             
Sbjct: 353 FISAKQRPG----FLENFNISVMVTADFWKHYEEDRPYPLVNPRDGS------------- 395

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVH 580
                         V+R +    L R++    ++T  P + + D  N  +P ++  G ++
Sbjct: 396 --------------VWRLVDTRKLLRQIAENAWKTADPGLLYHDNINELNPLREAYGDIY 441

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
             N C E  L         CNLGSINL A   + + D+D L   +  AVR LDNV+D+  
Sbjct: 442 CVNPCGEQPLYPHES----CNLGSINLHAFVKDGRLDWDALGKCVEDAVRFLDNVVDLTK 497

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           H  E  +K     R IGLG+MG    L+ L IPY+S E  E+    ME+I++ A+  SVE
Sbjct: 498 HPTEAIEKMTLRTRRIGLGIMGLADMLYALRIPYSSEEGFEMMRRVMEYIAYKAVETSVE 557

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG +  F  S W +G  P             L   R  ++ W  L + VK  G+RN
Sbjct: 558 LAEERGPFPDFPRSSWARGELPFRG----------LREGRELKMYWSRLVEHVKK-GIRN 606

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S+ + +APT +I+ +   S  ++P +  +Y K   +G F   +      L++  L  + +
Sbjct: 607 SHLLTVAPTGSISMLADTSSGLEPQFALVYRKQVTAGVFYYSDPVFEKALEEYGLPKQEI 666

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDE 879
           +  +  + GS+  I+ IP+DL+++  TA +I P W  + +    QKW+D + S  + +  
Sbjct: 667 VRRVAENGGSVQGIQEIPEDLRRVFVTALDI-PWWDHLRAQHEIQKWVDASVSKTINM-- 723

Query: 880 PSGKKLDFIYR---QAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           PS   +D + +    A  +GLK  T Y   S+SA  +   T +    +L+   + +    
Sbjct: 724 PSWVTVDDVLKAFIAAHRLGLKGVTVYRDGSKSAQVLVTPTQRNRRYELSV--INNTPEL 781

Query: 935 THSLGI---------PSSCTSDTECEVC 953
              LGI         P      T C VC
Sbjct: 782 LRGLGIEVEEKIAETPPPAIIHTTCPVC 809



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 41  FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD 100
           FD  +I  AI KA        A++ +  + +++ +    + +L     +  I H+E+IQD
Sbjct: 3   FDAERIRGAIRKAM-------AAKQVMDEKVLEKVVASVLEQLSSRFGAEKIPHVEEIQD 55

Query: 101 QVECSLMQSGHHKITREYVLYREERSDVR 129
            VE +LM+ G  ++ + Y+LYR ER+ +R
Sbjct: 56  IVESALMEHGLKEVAKAYILYRHERTRIR 84


>gi|254796776|ref|YP_003081612.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
 gi|254589966|gb|ACT69328.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
          Length = 608

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 312/664 (46%), Gaps = 103/664 (15%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           + RD      G  +L DRY    NG   E  Q  F RVA       ++  + A   Y+ +
Sbjct: 24  HARDSFLTDFGKAVLKDRYLQ--NG---EDYQGLFARVAQYY----SDDPEHACRLYDYM 74

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+  FM +TP L N GT      SCFL    D L GI G   EN  LA + GG+G+ W  
Sbjct: 75  SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 134

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++ EF+DLR
Sbjct: 135 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIVEFIDLR 193

Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           K TG D  R+  +++ A  I D FMK V ++  W L SP + S                 
Sbjct: 194 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKDGS----------------- 236

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSS 582
                     V   + A  +W ++LT   ETG P+I F D      P  +  +G+ V  S
Sbjct: 237 ----------VIATVGARGIWIRILTARLETGEPYILFIDTVQKLRPDVYKTLGLEVKMS 286

Query: 583 NLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNVI 636
           NLC+EITL +  +      TA+C L S+NL       +FD ++     IR  +  LDNV+
Sbjct: 287 NLCSEITLTTGKDHLDNHRTAICCLSSLNL------EKFDEWEHDEQFIRDVMHFLDNVL 340

Query: 637 D------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +       +C  + +A+ S    R+IGLG+MGF S L    IP+ S  A  +  +  + I
Sbjct: 341 EDFIRKAPDC--MHRARYSAMRERSIGLGVMGFHSFLQSRSIPFESAIAKSVNLKIFKKI 398

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S E+A ERG                          +D +  +   R       
Sbjct: 399 KHEADKISKEMALERGP------------------------CKDAVDCDMMERF------ 428

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                      + MAIAPTA+I+ I G  S  I+P   N++ +  +SG F V N  L   
Sbjct: 429 ----------VHKMAIAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFIVKNKHLAAL 478

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++    + + S +  ++GS+ +++ + ++ K +  TA+E+D  W+IE A+ R  +I Q
Sbjct: 479 LERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWIIELAADRTPYICQ 538

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +QS+NL+L     KK L  ++   W  GLK+ YY RS+S     K + +         PV
Sbjct: 539 SQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRTYKISQEYKHKSDTPSPV 598

Query: 929 TDPN 932
            +P+
Sbjct: 599 GEPD 602


>gi|125541523|gb|EAY87918.1| hypothetical protein OsI_09340 [Oryza sativa Indica Group]
          Length = 676

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 220/390 (56%), Gaps = 24/390 (6%)

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
           +V  +    +Y G++ S L      ++  +    P+YA + AR  +  L        +K 
Sbjct: 38  LVAQKVCAGVYKGVTTSQLGELAAETAAAMTASHPDYASLAARIAISNL--------HKT 89

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYL 296
             K+    ++ +Y  Y  R    G+ A L+ + + +    +   L +++ Y+RDF ++Y 
Sbjct: 90  TMKSFSETIKVMYMHYDER---SGLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYF 146

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G + L   Y L + G  +E PQ   MRV++G+   + E    A++ Y+++S   F  ++P
Sbjct: 147 GFKTLERSYLLKVVGKVVERPQHMLMRVSIGIHKDDIES---AIKTYHMMSQRWFTHASP 203

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+GT  PQLSSCFL  + DD + GI+  L E A ++K +GG+G     +R  G++I 
Sbjct: 204 TLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIR 263

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  
Sbjct: 264 GTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEN 323

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM+RV  N  W+LF P+E   L D +G EF+  Y+ YER+      
Sbjct: 324 RARDLFYALWIPDLFMERVQNNENWSLFCPNEAPGLADCWGDEFQNLYKKYEREG----- 378

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFK 564
           K  + +SA ALW  +L    ETG P++ +K
Sbjct: 379 KAKKVVSAQALWFDILKAQIETGTPYMLYK 408



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 141/245 (57%), Gaps = 11/245 (4%)

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY   +A ++  +  E I +HA+ AS E+A + G Y ++ GS   +G+   D   ++   
Sbjct: 403 PYMLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP-- 460

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 461 --------SDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSR 512

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +EI 
Sbjct: 513 RVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIK 572

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A   
Sbjct: 573 QKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADA 632

Query: 912 EKSTL 916
            K T+
Sbjct: 633 IKFTV 637


>gi|95930217|ref|ZP_01312955.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133680|gb|EAT15341.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 738

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 185/624 (29%), Positives = 298/624 (47%), Gaps = 85/624 (13%)

Query: 298 LQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFH 350
           L +L  RY       R +E P   F RVA  +A  E + +K+A       EFY+++++  
Sbjct: 17  LTVLERRYLKRDEKGRALETPANMFERVANAIAEAEKKFDKKADTKKVAAEFYDMITNLE 76

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  
Sbjct: 77  FLPNSPTLMNAGRELGQLSACFVLPVADSMESIFEAIKNTALIHKSGGGTGFSFSRIRPA 136

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F+KV +     + QGG R+GA    L   H D+ +F+  ++   
Sbjct: 137 NDVVLSTKGVSSGPLSFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCKR--- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP--DEVSDLHDLYGKEFEIAYENYERQ 528
            D+    + N +  + + FM+ V  +  + + +P   EV D                   
Sbjct: 194 -DQTVLTNFNISVGLTEEFMEAVKTDGEYDIINPRTGEVCD------------------- 233

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                     K+SA  ++  ++ + +  G P I F D  N  +P  H+G + S+N C E 
Sbjct: 234 ----------KMSAAKVFDHIVDLAWNNGEPGIIFLDRLNRDNPTPHIGEIESTNPCGEQ 283

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     + Q D+DKL  T++ +VR LDNVI++N + I +  +
Sbjct: 284 PLLPYES----CNLGSINLNRMVKDGQVDWDKLRKTVQKSVRFLDNVIEVNNYPIPEITE 339

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +  +R IGLG+MG+   L  + I Y   EA E+A + M+FI+  A  AS +LA+ERGA+
Sbjct: 340 MSLANRKIGLGIMGWADMLIRVGISYCDQEAAELAAKLMKFINDEAHQASRDLAKERGAF 399

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F+GS+++Q   P                                   +RN+ C  IAP
Sbjct: 400 PNFEGSIFEQRQEP----------------------------------KIRNATCTTIAP 425

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  I+P +   YV+  M  D  V VN       K+R  +   ++  L   
Sbjct: 426 TGTISIIANSSSGIEPLFAVSYVRQVMDNDILVEVNPLFEEVAKERGFYSPELMK-LIAE 484

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            G+I + ++IP+D++++  TA +I P   I   S  QK+ D A S  + + +  +   + 
Sbjct: 485 KGTIQDFDQIPEDVRRVFVTAHDITPEEHIRMQSAFQKYTDNAVSKTVNFCNSANRDDVA 544

Query: 887 FIYRQAWLMGLK--TTYYLRSRSA 908
            +Y+ A+  G K  T Y   SR A
Sbjct: 545 QVYQMAYESGCKGVTIYRDGSRDA 568


>gi|254418479|ref|ZP_05032203.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
 gi|196184656|gb|EDX79632.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
          Length = 629

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 209/680 (30%), Positives = 317/680 (46%), Gaps = 104/680 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G + L DRY L       E  Q  F RV+       ++    A   Y+ +S 
Sbjct: 40  RDALLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAF----SDDADHAQRLYDYMSR 90

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W  VR
Sbjct: 91  LWFMPATPVLSNGGADRGLPISCFLNAVGDSLDGIQSVWNENVALASNGGGIGTYWGGVR 150

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 151 SIGEKVKGA-GKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 209

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    + D FM+ V   A + L SP + +                    
Sbjct: 210 SGDFNRKSLNLHHGVNVTDEFMEAVKTGATFDLKSPKDGA-------------------- 249

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLC 585
                  V + + A +LW K+L +  +TG P++ F D  N  +   Q+ +G+ V  SNLC
Sbjct: 250 -------VIKTVDARSLWTKLLDIRMQTGEPYMIFSDTVNRQMAPHQRDLGLKVKQSNLC 302

Query: 586 TEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            EI L++       + TAVC L S+N     A    ++ +    I   +R LDNV++   
Sbjct: 303 AEIMLHTGRDHLGVDRTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFLDNVLEDFI 357

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 ++ A  S    R++GLGLMGF S L    + + S  A        + +   A  
Sbjct: 358 RRAPPEMKAAVYSAKRERSVGLGLMGFHSFLQGQGVAFESAMAKSWNMRLFKHLRREADK 417

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+E+G                                          L    + +
Sbjct: 418 ASRLLAEEKGPC----------------------------------------LDAEERGV 437

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++ +
Sbjct: 438 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLDEKGI 497

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             EA+ + +  H+GS+ +++ + +D K I+ TAFE+D  W++E A+ R   I QAQSLNL
Sbjct: 498 NTEAVWNSILEHEGSVQHLDALNEDEKGIYKTAFELDQRWVVELAADRAPEICQAQSLNL 557

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           ++     K  L  ++  AW  G+K+ YYLRS+   SV+++   G + K  A  V DPN  
Sbjct: 558 FIPGDVNKWDLHMLHWSAWERGVKSLYYLRSK---SVQRAAFAGAEDKAEA--VIDPNQP 612

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                +P   T   EC  CQ
Sbjct: 613 D-LFSMPK--TDYDECLACQ 629


>gi|197103807|ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477227|gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
          Length = 619

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 301/633 (47%), Gaps = 96/633 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+ +S+
Sbjct: 37  RDANLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRIYDYISN 87

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N G       SCFL  VPD+L GI     EN  LA   GG+G  W  VR
Sbjct: 88  LWFMPATPVLSNGGASRGLPISCFLNAVPDNLDGIVSVWNENVALASNGGGIGTYWGGVR 147

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK 
Sbjct: 148 SIGEKVKGA-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKP 206

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
           +GD  R++ +++    I D FM+ V   A + L SP                        
Sbjct: 207 SGDFNRKSLNLHHGLSITDEFMEAVRDGAMFGLRSPKT---------------------- 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
              GE  V R++ A +LW+K+L +  +TG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 245 ---GE--VIREVDARSLWQKILEIRLQTGEPYLIFSDTVNRAMPQHQRELGLQVRQSNLC 299

Query: 586 TEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +EI L++       E TAVC L S+N     A    ++    + I   +R LDNV++   
Sbjct: 300 SEIMLHTGQDHLGQERTAVCCLSSVN-----AEKFLEWRDHPTFIEDVMRFLDNVLEDFI 354

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           H     ++ A  +    R++GLGLMGF S L   ++P+ S  A        + +     +
Sbjct: 355 HRAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPFESALAKSWNMRLFKTLRRQCDA 414

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA ERG                                      P  +  +R   +
Sbjct: 415 ASRTLAAERG--------------------------------------PCPDAAER--GV 434

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++  
Sbjct: 435 MERFSHKLAIAPTASISIICGGTSAGIEPIPANIYSHKTLSGTFAVKNPYLERLLDEKGQ 494

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
              A+   +  ++GS+ ++E +  D K +  TAFEID  W++E A+ R   I Q+QS+NL
Sbjct: 495 NTAAVWDSILANEGSVQHLEFLSQDEKDVFKTAFEIDQRWIVELAADRTPDICQSQSVNL 554

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRS 907
           +L     K  L  ++  AW  G K+ YYLRS+S
Sbjct: 555 FLPGDIDKWDLHMLHWTAWERGCKSLYYLRSKS 587


>gi|326782197|ref|YP_004322598.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004404|gb|ADO98797.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 766

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 198/671 (29%), Positives = 315/671 (46%), Gaps = 47/671 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N +++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   ITVIKRNGDKDSLNLEKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIETSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR+++            H+E      ++  +  +  
Sbjct: 65  SASDLISLETPNYQYVASRLLLFDLRKQL----------NDHYEDHPFILDHVKKCADLD 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           V  + + E   + +   + + + Y RD+ F Y G++ + D+Y +    +G   E PQ  +
Sbjct: 115 VYDKTIIEKYTEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + +A  L  ++  KE R      +YN +S       TP +  +G R P  Q +SC L  V
Sbjct: 175 IMIATTL-FQQYPKETRLDYVRRYYNAISKHKINIPTPVM--AGVRTPLRQFASCVLVDV 231

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T  
Sbjct: 232 DDTLDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVR 291

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
              Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R  QN
Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMQN 351

Query: 497 AGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554
              +LFSP +V  L+D +G  EF+  YE YE      +  V RK I A  L+  +L    
Sbjct: 352 KDISLFSPHDVPRLYDAFGMPEFDALYEQYE-----ADDSVPRKTIPARELFNSLLKERS 406

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606
           ETG  +I   D CN  S    +  V+ SNLC EITL        +    E A+C L +IN
Sbjct: 407 ETGRIYIMNIDHCN--SHSSFLDKVNMSNLCQEITLPTDPINHIDDEGGEIALCILSAIN 464

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +           D++      AVR L+ +ID   + ++ AK+S    R++G+G +G    
Sbjct: 465 V-----GKITQLDQMDELCDLAVRALEELIDYMQYPVDAAKRSTLARRSLGIGYIGLAHY 519

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y  PEA ++  +  E   +H + AS ELA+ERGA   F+ + +  GV PID+ 
Sbjct: 520 LAKNGVKYDDPEAWKLVHDLTESFQYHLLKASNELAKERGACEGFRHTKYSNGVLPIDTY 579

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               EV DEL  N+ +   W  L+  +   G+R+S   A  P+ + + +   +  I+P  
Sbjct: 580 K--KEV-DELVENKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635

Query: 787 QNLYVKSNMSG 797
             L VK +  G
Sbjct: 636 DFLSVKKSKKG 646


>gi|88608409|ref|YP_506298.1| ribonucleotide-diphosphate reductase subunit alpha [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600578|gb|ABD46046.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 605

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 200/639 (31%), Positives = 304/639 (47%), Gaps = 103/639 (16%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           + RD      G  +L DRY    NG   E  Q  F RVA       ++  K A   Y+ +
Sbjct: 21  HARDSFLTDFGKAVLKDRYLQ--NG---EDYQGLFARVAKYY----SDDPKHACRLYDYM 71

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+  FM +TP L N GT      SCFL    D L GI G   EN  LA + GG+G+ W  
Sbjct: 72  SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 131

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++ EF+DLR
Sbjct: 132 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIIEFIDLR 190

Query: 467 KNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           K TG D  R+  +++ A  I D FMK V ++  W L SP + S                 
Sbjct: 191 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKDGS----------------- 233

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSS 582
                     V   + A  +W ++LT   ETG P+I F D      P  +  +   V  S
Sbjct: 234 ----------VIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMS 283

Query: 583 NLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNVI 636
           NLC+EITL +  +      TA+C L S+NL       +FD ++     +R  +  LDNV+
Sbjct: 284 NLCSEITLTTGKDHLDNHRTAICCLSSLNL------EKFDEWEHNEQFVRDVMHFLDNVL 337

Query: 637 D------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +       +C  + +A+ S    R+IGLG+MGF S L    IP+ S  A  +  +  + I
Sbjct: 338 EDFIRKAPDC--MHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFKKI 395

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S E+A ERG                 D++                    D ++
Sbjct: 396 KHEADKISKEMALERGPCK--------------DAVDC------------------DTME 423

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + V  I        A+APTA+I+ I G  S  I+P   N++ +  +SG F V N  L   
Sbjct: 424 RFVHKI--------AVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAAL 475

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++    + + S +  ++GS+ +++ + ++ K +  TA+E+D  W+IE A+ R  +I Q
Sbjct: 476 LERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQ 535

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           +QS+NL+L     KK L  ++   W  GLK+ YY RS+S
Sbjct: 536 SQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKS 574


>gi|170289761|ref|YP_001736577.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173841|gb|ACB06894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 876

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 178/587 (30%), Positives = 290/587 (49%), Gaps = 61/587 (10%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           K  +E+Y L+    F+ ++PTLFN+GT   QLS+CF+  + D L  I  +  E AM+ K 
Sbjct: 246 KDFLEYYRLMVDLKFIPNSPTLFNAGTMLGQLSACFVLPIEDSLESIMRSATEAAMIFKS 305

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G +++ +R  G  +  T G++ G + F+++ +     V QGG+R+GA    LE WH
Sbjct: 306 GGGVGINYSKLRPQGDIVRSTGGQASGPVSFMRIIDVITDVVKQGGRRRGANMGILEIWH 365

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +F++ +   G+      + N +  I + F K   +   + L +P            
Sbjct: 366 PDIMKFIEAKAKPGN----LENFNLSVMITEDFWKYYEEGKDYPLINP------------ 409

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQH 575
                  N E        + FRKI+ +A WR        TG P + F D  N R+  ++H
Sbjct: 410 ------RNGEVWGSIDPREAFRKIAEMA-WR--------TGDPGVLFADNINRRNILREH 454

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRV 631
           +G + S+N C E  L         CNLGS+NL A+         FD+D+ +  IR A+R 
Sbjct: 455 LGEIKSTNPCGEEPLYPYES----CNLGSMNLYAYIRRENGLVTFDWDEYSRDIRKALRF 510

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDN+ID+N   I + +K+    R +GLGLMG    L  L IPY S E       + E+++
Sbjct: 511 LDNIIDVNKFPIPEIEKTTKRTRKVGLGLMGLADTLFALRIPYNSEEGFNFMRRAAEYLT 570

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           + A+  SVE A+ERG++  F  S + +G  P++                   L WD L++
Sbjct: 571 YFAMLESVERAKERGSFPLFPESGYVRGEMPVEG----------FYHPEIWNLDWDYLRE 620

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++   G+RN+    IAPT +I+ I  VS  I+P +  ++ K    G F  V++    +LK
Sbjct: 621 QIMRNGIRNAEVTTIAPTGSISMIAEVSSGIEPQFALVFEKRVTVGSFFYVDAEFERQLK 680

Query: 812 QRDLWDEAMISDLKYHDGSIGNIER------IPDDLKKIHATAFEIDPMW-LIESASRRQ 864
           +  L+ E ++ D+  + GS+  IE       + + +K+I   A++I P W  I + +   
Sbjct: 681 ENGLYSEKILRDIAENGGSLYGIEAPEGKEDVIERMKRIFLVAYDI-PWWDHIRAEAEIS 739

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSA 908
           +WI  A S  + + +  S   ++  Y  A  +GLK  T Y   S+SA
Sbjct: 740 RWICAAVSKTINMPNWVSVSDIEKAYLFAHRLGLKGITVYRDGSKSA 786



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  FD  +I RAI    MA+   G      +  ++K + +   +        
Sbjct: 5   KVVKRDGRVVEFDSFRIRRAIE---MAMREVGKFDEAILDKVVKYVLDVIDSTFSDERPP 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               H+E+IQD VE +LM+    ++ + Y++YR+ER  +R
Sbjct: 62  ----HVEEIQDIVELALMKYDLFEVAKAYIVYRKEREKIR 97


>gi|322418582|ref|YP_004197805.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320124969|gb|ADW12529.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 745

 Score =  260 bits (665), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 188/641 (29%), Positives = 304/641 (47%), Gaps = 81/641 (12%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350
           L +L  RY      G  +E     F RVA  +A  ++  +K+A       +FYN++++F 
Sbjct: 18  LTVLEKRYLKRDQTGKTLETAADMFRRVATAIAQADSVFDKKADISALSDKFYNMMTNFE 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +    
Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK---- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +D+R+ ++ N +  I + FMK V  +  + L +P +      L  +              
Sbjct: 194 NDQRQLNNFNISVGITEEFMKAVDADKDYNLVNPRDKKQAGTLNAR-------------- 239

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I   A W        E G P I F D  N  +P  H+G + S+N C E  L
Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     + + D+DKL   ++TAV  LDNVI++N + +E+  +  
Sbjct: 287 LPYES----CNLGSINLGKMVVHGKVDWDKLKEVVQTAVHFLDNVIEVNNYPLEQIDQMT 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
            ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+     AS +LA+ RGA+ +
Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGKIASRKLAKSRGAFPN 402

Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           FKGS++D  G  PI                                   RN+    IAPT
Sbjct: 403 FKGSIYDAPGADPI-----------------------------------RNATVTTIAPT 427

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   +V+  M  +  V VN       K +  + E ++  +  H 
Sbjct: 428 GTISIIANASSGVEPLFAVSFVRQVMDKNILVEVNPLFEKIAKDQGFYSEELMQRIAEH- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G++ +I  IP+ ++ +  TA +I P   I   +  Q+  D A S  + +  E + + ++ 
Sbjct: 487 GTVQDISAIPEGVRDVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPREATIEDVEK 546

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +YR A+    K     R  S      S  K  + K+ A PV
Sbjct: 547 VYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKIAAPPV 587


>gi|61806079|ref|YP_214439.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374588|gb|AAX44585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525291|gb|ACY76088.1| NrdA [Prochlorococcus phage P-SSM2]
          Length = 775

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 196/685 (28%), Positives = 318/685 (46%), Gaps = 58/685 (8%)

Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PN 215
            N +++ ++ EEAC GL  VS+  V  ++    YDG++ ++++  LI S+  LI+ + PN
Sbjct: 18  LNLEKIHVMCEEACEGLAGVSASQVEIQSGIQFYDGITTAEIQEILIRSASDLIDLDHPN 77

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  V AR LL  LR+++   + + P    H              +++ VK  +    ++D
Sbjct: 78  YQFVAARLLLFSLRKQLFGRLRECPTVIDH--------------VQKCVKKGIYDAEILD 123

Query: 276 F----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLA 329
                +   L + + + RDF F Y GL+ + D+Y +     G   E PQ  ++ +A  + 
Sbjct: 124 LYSEEEYNRLQSFIDHSRDFLFTYAGLRQVVDKYLVQDRSTGEVYETPQFMYLMIAATI- 182

Query: 330 LKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIF 384
             +  KE R     ++Y+ +S       TP +  +G R P  Q +SC L  + D L  IF
Sbjct: 183 FSKYPKETRLDYVRKYYDAISRHRINIPTPIM--AGVRTPIRQFASCVLVDIDDTLDSIF 240

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +            G+G +   +RG+ A I G   +  GV+PFLK    T     Q G R
Sbjct: 241 SSDMAIGKYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVVPFLKKFESTVRCCTQNGIR 300

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+   +   WH ++ + L L+ N G +  R   ++ +  +  LF +R  QN   TLFSP
Sbjct: 301 GGSATVHFPIWHQEISDILVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIQNLPITLFSP 360

Query: 505 DEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            +V  L+D +G + F+  Y  YE      E      I A  L   +L    ETG  ++  
Sbjct: 361 HDVPGLYDAFGSDTFDELYTQYESD----ESIPRTTIGAQELILDLLKERAETGRIYLMN 416

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615
            D CN  S    +  V  SNLC EITL        +  + E A+C L +IN+        
Sbjct: 417 IDHCN--SHSSFLDKVEMSNLCQEITLPTKPIQHIDDETGEIALCILSAINI-----GKI 469

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L      ++R LD +ID   + +  A+ +    R++G+G +G    L    + Y 
Sbjct: 470 RDVSDLEGLCDLSIRSLDELIDFQGYPVRAAEIATKARRSLGVGFIGLAHYLAKQGVKYE 529

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            PEA ++  +  E   ++ I +SV LA+E+GA +    + + QG+ PID+     +  DE
Sbjct: 530 DPEAWKLVHDLTEVFQYNLIKSSVNLAKEKGACTYSDRTKYSQGILPIDT---YKQDVDE 586

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           L  N  S   W+ L++ VK  G+RNS   A  P+ + + +C  +  I+P    L +K + 
Sbjct: 587 LVPNNLS-CDWESLREDVKQYGIRNSTLSAQMPSESSSVVCNATNGIEPPRGYLSIKKSK 645

Query: 796 SGDF-TVVNSFLVNELKQRD--LWD 817
            G    +V S+  N LK     LWD
Sbjct: 646 KGPLKQIVPSY--NTLKNNYTLLWD 668


>gi|300088374|ref|YP_003758896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528107|gb|ADJ26575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 902

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 173/592 (29%), Positives = 273/592 (46%), Gaps = 83/592 (14%)

Query: 292 AFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYN 344
           AF    L +L  RY      G  IE P+    RVA  +A  E   + +        EFY 
Sbjct: 154 AFSDNALAVLNKRYLKKDKQGQAIEAPEDMLRRVARTVAAAELIYDPKCNVRNVENEFYG 213

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   F+ ++PTL N+G    QLS+CF+  + D +  IF A++  AM+ K  GG G  +
Sbjct: 214 LMARLEFLPNSPTLMNAGRELGQLSACFVLPIDDSIESIFDAVKHTAMIHKSGGGTGFSF 273

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+E F+ 
Sbjct: 274 SRLRPESDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIEHFIT 333

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G       + N +  I D FM+    +  + L +P                    
Sbjct: 334 AKQQAG----VLTNFNLSVAITDKFMEAARADEEYELINP-------------------- 369

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                  GE+   R+  A A++ +++ + ++TG P I F D  N  +P   +G + S+N 
Sbjct: 370 -----QNGEVAGRRR--ARAIFDQIVQLAWKTGDPGIVFIDRINAENPTPKLGRIESTNP 422

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIRTAVRVLDNVIDINCH 641
           C E  L         CNLGS+NL      N   Q DYDKL  T+RTAVR LD+VID+N  
Sbjct: 423 CGEQPLLPYES----CNLGSVNLSKMVKGNGKKQVDYDKLRYTVRTAVRFLDDVIDVNKF 478

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+  +     R IGLG+MGF   L  L +PY SPEA+ + +E M FI   +  AS  L
Sbjct: 479 PLEQIAEQTRRTRKIGLGVMGFADMLIALGVPYNSPEALRVGEEVMGFIQAESHRASSAL 538

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A ERG + +++GS +D                                      + MRN+
Sbjct: 539 ADERGVFPAYEGSKYD------------------------------------GQVKMRNA 562

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM 820
           +C  IAPT T++ I G S  I+P +   + ++ M G   + VN +     +    + E +
Sbjct: 563 SCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNIMDGTRMIEVNPYFAEAARSGGFYSEEL 622

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +  L      + +++ +P+++KK+  TA  I P   ++  +  QK+ D A S
Sbjct: 623 MKKLA-EGAHLEDMKEVPEEVKKLFVTAHSITPEGHVKMQAAFQKYTDNAVS 673


>gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit
           [Organic Lake phycodnavirus 1]
          Length = 824

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 200/332 (60%), Gaps = 10/332 (3%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           Y+R++  +Y G + L   Y +  +   IE  Q  +MRVA+ +      K K   + Y+ L
Sbjct: 129 YDRNYLIDYFGYKTLERAYLMRNDNMVIENIQHLWMRVAVQIHGNCLPKVK---DTYDGL 185

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
           S   F+ +TPTL+N+GT  PQLSSC+L  + +D + GIF  L++ A ++K++GG+G    
Sbjct: 186 SKKLFIHATPTLYNAGTTRPQLSSCYLLGMEEDSIDGIFNTLRDCASISKWAGGIGLHIH 245

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD 464
            VR  G  I GTNG S G++P L+V N+TA  V+QGG KR G+   YLE WH D+ EFL+
Sbjct: 246 NVRAKGTSILGTNGTSNGIVPMLRVFNNTARYVDQGGGKRNGSFAMYLEPWHGDILEFLE 305

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           LRKN GD+  R  D+  A WIPDLFM+++  +  W L  P     L ++YG+EFE  YE+
Sbjct: 306 LRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWYLMCPHICKHLDNVYGEEFETLYES 365

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y         +  +K+ A  LW  +L    ETG P++ +KD CN +S Q+++G + SSNL
Sbjct: 366 YVSSG-----QYLKKMKARELWFHILDSQMETGTPYMLYKDACNQKSNQKNIGTIKSSNL 420

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           C EI   S  +E+AVCNL SI+L +    ++F
Sbjct: 421 CCEIIEYSDKDESAVCNLASISLSSFVKKSKF 452



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 170/317 (53%), Gaps = 12/317 (3%)

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           +G  + +     + FDY+ L    +     L+ +ID+N +  +K ++SN  HR IG+G+ 
Sbjct: 504 IGGFSDVISLFKSTFDYNGLHKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQ 563

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720
           G      +L+I + S EA EI     E +   ++  S+E+A+E+   Y+SFKGS   +G+
Sbjct: 564 GLADVFAMLNIAFDSDEAKEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGI 623

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   +            + R  W  LK+ +   G  NS CMA  PTA+ + I   ++
Sbjct: 624 LQFDMWNVTP----------SKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNE 673

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  ++G+F V+N  L+ EL   ++W+ ++ +D+  + GSI +I  IPD 
Sbjct: 674 CFEPFTSNMYTRRTLAGEFMVINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDY 733

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           +K  +   +E+    +++ +  R  +I Q+QS+NL+++EP+ K L  ++  AW  GLKT 
Sbjct: 734 IKAKYKIVWEMSMKTIMDMSKDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTG 793

Query: 900 TYYLRSRSATSVEKSTL 916
            YYLR ++    ++ T+
Sbjct: 794 MYYLRRKAKHHAQQFTV 810


>gi|78222511|ref|YP_384258.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193766|gb|ABB31533.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 742

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 180/618 (29%), Positives = 296/618 (47%), Gaps = 81/618 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHFM 352
           +L  RY     +G  +E P   F RVA  +A+ +   +K+A       +FY+L++SF F+
Sbjct: 20  VLEKRYLKRDTDGRVLETPADMFRRVAEAIAVADRNFDKKADTKALAQKFYDLMTSFEFL 79

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R    
Sbjct: 80  PNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLRPAND 139

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  +    DD
Sbjct: 140 VVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK----DD 195

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           ++  ++ N +  + + FM+ V ++A + L +P +      L  +                
Sbjct: 196 QKHLNNFNISVGLTEAFMEAVERDADYDLRNPRDGKPCGTLNAR---------------- 239

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             KVF +I   A W+         G P I F D  N  +P  H+G + S+N C E  L  
Sbjct: 240 --KVFSRIVKQA-WK--------NGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLP 288

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNLGSINL     N   D+ +L   IR  V  LDNVI++N + + +      +
Sbjct: 289 YES----CNLGSINLGKMVNNGDVDWKRLREVIRLGVHFLDNVIEVNNYPLPQINDMTRS 344

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IGLG+MG+   L LL IPY+SPEA+ + ++ M FI+    + S ELA  RGA+ +F 
Sbjct: 345 NRKIGLGVMGWADMLILLGIPYSSPEAISLGEKVMRFINDEGHAYSRELAAVRGAFPNFV 404

Query: 713 GSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           GS +D+ G  PI                                   RN+    IAPT T
Sbjct: 405 GSTFDRPGEGPI-----------------------------------RNATVTTIAPTGT 429

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   S  ++P +   +V+  +  +  V VN       + +  + E ++  +  H G+
Sbjct: 430 ISIIANASSGVEPLFAVSFVRQVLDKNILVEVNPIFEEIARDQGFYSEELMQKIAQH-GT 488

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
           + ++  IP+D++K+  TA +I P   IE  +  QK+ D A S  + + +  + ++++ +Y
Sbjct: 489 VHDLAEIPEDIRKVFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNAATIEEVEKVY 548

Query: 890 RQAWLMGLKTTYYLRSRS 907
           R A+ +  K     R  S
Sbjct: 549 RLAYKLECKGVTIYRDGS 566


>gi|255003305|ref|ZP_05278269.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Puerto Rico]
 gi|255004431|ref|ZP_05279232.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Virginia]
          Length = 595

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 199/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 10  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 61  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  ++GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 121 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 220

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584
                   V   + A  LW K+LT   ETG P++ F D  N   P   + +G+ V  SNL
Sbjct: 221 --------VISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272

Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635
           CTEITL +  +      TA+C L S+NL         +Y  + ST    I   +R LDNV
Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 323

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I 
Sbjct: 324 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA E+G                           D +  N+  R        
Sbjct: 384 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 412

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                     + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L
Sbjct: 413 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + + L ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QA
Sbjct: 464 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 523

Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+N++L  P+G   + L  I+  AW  G+K+ YYLRS+S    +K
Sbjct: 524 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 567


>gi|56416956|ref|YP_154030.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. St. Maries]
 gi|222475322|ref|YP_002563739.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
 gi|56388188|gb|AAV86775.1| ribonuclease-diphosphate reductase alpha chain [Anaplasma marginale
           str. St. Maries]
 gi|222419460|gb|ACM49483.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
          Length = 606

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 199/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 21  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 71

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 72  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 131

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  ++GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 132 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 190

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 191 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 231

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584
                   V   + A  LW K+LT   ETG P++ F D  N   P   + +G+ V  SNL
Sbjct: 232 --------VISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 283

Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635
           CTEITL +  +      TA+C L S+NL         +Y  + ST    I   +R LDNV
Sbjct: 284 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 334

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I 
Sbjct: 335 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 394

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA E+G                           D +  N+  R        
Sbjct: 395 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 423

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                     + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L
Sbjct: 424 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 474

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + + L ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QA
Sbjct: 475 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 534

Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+N++L  P+G   + L  I+  AW  G+K+ YYLRS+S    +K
Sbjct: 535 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 578


>gi|254995135|ref|ZP_05277325.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Mississippi]
          Length = 595

 Score =  257 bits (656), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 198/646 (30%), Positives = 305/646 (47%), Gaps = 109/646 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 10  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYY----SDNDEHAQRLYDYMSK 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 61  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  ++GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 121 SIGEKVR-SSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKDKC------------------- 220

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNL 584
                   V   + A  +W K+LT   ETG P++ F D  N   P   + +G+ V  SNL
Sbjct: 221 --------VISTVRARDMWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272

Query: 585 CTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLAST----IRTAVRVLDNV 635
           CTEITL +  +      TA+C L S+NL         +Y  + ST    I   +R LDNV
Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL---------EYYDMWSTEPMFIEDVMRFLDNV 323

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I 
Sbjct: 324 LTDFINKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIK 383

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA E+G                           D +  N+  R        
Sbjct: 384 RQADEVSHKLALEKGP------------------------CPDAIDANKMERF------- 412

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                     + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L
Sbjct: 413 ---------VHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLL 463

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + + L ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QA
Sbjct: 464 ESKGLDNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQA 523

Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QS+N++L  P+G   + L  I+  AW  G+K+ YYLRS+S    +K
Sbjct: 524 QSVNIFL--PAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADK 567


>gi|197117589|ref|YP_002138016.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197086949|gb|ACH38220.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter bemidjiensis Bem]
          Length = 744

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 183/620 (29%), Positives = 301/620 (48%), Gaps = 81/620 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350
           L +L  RY      G  +E     F RVA  +A  +   +K+A       +FYN++++F 
Sbjct: 18  LTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTNFE 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +    
Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCKA--- 194

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+R+ ++ N +  I + FMK V  +  +TL++P           ++ + A +   R   
Sbjct: 195 -DQRQLNNFNISVGITEAFMKAVDADEEYTLYNP-----------RDKQPAGKQNAR--- 239

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I   A W        E G P I F D  N  +P  H+G + S+N C E  L
Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++  +  
Sbjct: 287 LPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMT 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
            ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ RGA+ +
Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAFPN 402

Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           FKGS++D+ G  PI                                   RN+    IAPT
Sbjct: 403 FKGSVYDKLGAEPI-----------------------------------RNATVTTIAPT 427

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   YV+  M  +  V VN       K    + + ++  +  H 
Sbjct: 428 GTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAEH- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  + +  E + + ++ 
Sbjct: 487 GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEK 546

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +YR A+    K     R  S
Sbjct: 547 VYRLAYESNCKGVTIYRDGS 566


>gi|242399121|ref|YP_002994545.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
 gi|242265514|gb|ACS90196.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
          Length = 897

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 219/865 (25%), Positives = 388/865 (44%), Gaps = 161/865 (18%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  AI +A   V        +R  +++  + +  + R+ +  + 
Sbjct: 5   KVMKRDGRIVPFDESRIRWAIQRAMWEV-------GVRDDNLLDKVVKDVIDRINELYEG 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y++YR++++++R              K KI+ 
Sbjct: 58  Q-VPHIENIQDIVELELMRNGLFEVAKAYIIYRKKKAEIREE------------KRKIL- 103

Query: 150 DDGTLISFNSKRLEMIVEE-ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   N ++L+ I +  + +GL+                            + +SR 
Sbjct: 104 --------NKEKLDEIDKRFSINGLR----------------------------VLASRY 127

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE-YFCR---YIEEGV 264
           LI+ E      T + L E  R  +L  +              LY E  F +   YI++  
Sbjct: 128 LIKNEEGKIVETPKELFE--RVAILAAI-----------PDLLYDERMFSKEGTYIQDLK 174

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +     ++  +FD +Y     K  + + FE +            +N  R E+ +   M+V
Sbjct: 175 RVEYYLQNFENFDSIYTIGRFKLNK-YQFERM------------VNLYR-ELAEKGKMKV 220

Query: 325 AMGLALK-----ETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++   L      E +K +  +E F+NL+ +  FM +TP L NSG     LS+CF+  + D
Sbjct: 221 SIDEFLNMLKNGEFDKYEGVIEEFFNLMVNQVFMPNTPALINSGRPLGMLSACFVVPIED 280

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           D+  I  A  + A++ K  GG G +++ +R  G  +  T G + G I F+ + +  +  +
Sbjct: 281 DMESIMKAAHDVAIIQKMGGGTGLNFSKIRPEGDLVGTTTGAASGPISFMHLIDAVSNVI 340

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            QGG R+GA    LE WH D+E+F+  + +N G +     +++   W    F + + +  
Sbjct: 341 KQGGVRRGANMGILEVWHPDIEKFIHAKEQNVGTNILSNFNISVGMWAD--FWEALKEGK 398

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            + L +P                          R   KV ++I   +L+ ++  M +   
Sbjct: 399 KYPLINP--------------------------RTGKKV-KEIDPRSLFEELAYMAWAKA 431

Query: 558 HPWITFKDPCNIRS---PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
            P + F D  N R+   P +    + ++N C E  L         CNL SIN LA F   
Sbjct: 432 DPGVVFFDVINKRNVLVPAKGEK-IRATNPCGEEPLYDYES----CNLASIN-LAKFVKY 485

Query: 615 Q------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  F++D+ A  I    + LDN ID+N   + +   +    R IG+G+MG   AL 
Sbjct: 486 DDEGKPYFEWDEYAKVIMKVAKYLDNAIDVNKFPLPEIDYNTKLSRRIGVGIMGLADALF 545

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L I Y S E  +   ++ E+++F+A   S+  A+ERG +  +  + + +G  PI+    
Sbjct: 546 KLGIRYNSKEGYDFMRKATEYLTFYAYKYSIRAAKERGPFPLYHKTEYPEGKLPIEG--- 602

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                          LPWDEL + ++  G+RN+      PT +++ I   S  I+P +  
Sbjct: 603 -------YYHKEIWNLPWDELVEDLRKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFAL 655

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y KS   G+F  V+     ELK+R L+ + ++  +  + GS+  +E IP+D++KI  TA
Sbjct: 656 VYKKSVTVGEFYYVDPIFEAELKKRGLYTDEILQKISDNYGSVQGLEEIPEDVQKIFVTA 715

Query: 849 FEID-----------PMWLIESASR 862
            +I             +WL +SAS+
Sbjct: 716 MDIHWFDHLLAQASIQLWLTDSASK 740


>gi|238613293|ref|XP_002398406.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
 gi|215474876|gb|EEB99336.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
          Length = 319

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/314 (42%), Positives = 185/314 (58%), Gaps = 6/314 (1%)

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           GTNG S G++P L+  + TA  V+QGG KR GA   Y+E WH D+  F+DLRKN G +  
Sbjct: 1   GTNGYSNGIVPMLRFYHATARYVDQGGNKRPGAFAMYIEPWHADIFAFIDLRKNHGKEEV 60

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFMKRV   A W+L  P+E   L D+YG EFE  YE YER+    E 
Sbjct: 61  RARDLFYALWIPDLFMKRVEAGANWSLVCPNEAPGLPDVYGAEFEALYEKYEREGRARE- 119

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
                I A  LW  +L    ETG P++ +KD  N +S Q+++GV+ SSNLCTEI   SS 
Sbjct: 120 ----SIPAQKLWYAILEAQVETGTPFMCYKDHANSKSNQKNLGVIKSSNLCTEIMEYSSP 175

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +ETAVCNL S+ L       +F++ KL    +     L+ +ID+N + + +A++SN  HR
Sbjct: 176 DETAVCNLASLALPTFVHKGEFNFKKLHDVAKVVAFNLNRIIDVNYYPVPEARRSNMRHR 235

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G       L +P+ SPEA  +  +  E I + A+ AS+++A++ G Y ++ GS
Sbjct: 236 PIGIGVQGLADTFMALRLPFESPEAKLLNIQIFETIYYAALDASLDIAEKDGPYETWMGS 295

Query: 715 LWDQGVFPIDSIGL 728
              QG    D  G+
Sbjct: 296 PAQQGPMQYDIGGV 309


>gi|254496937|ref|ZP_05109776.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
 gi|254353846|gb|EET12542.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
          Length = 188

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 154/198 (77%), Gaps = 11/198 (5%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK  +LWD
Sbjct: 1   MRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLVADLKALNLWD 60

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M++DLKY +GS+  I RIP +LK+ +AT+FEIDP+WL+++ASRRQKWIDQAQSLN+Y+
Sbjct: 61  EVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQKWIDQAQSLNIYM 120

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +PSGKKLD +Y  AW  GLKTTYYLRS  AT+ EKST+   DG LNAV +         
Sbjct: 121 AQPSGKKLDQLYMHAWTRGLKTTYYLRSLGATNAEKSTI--TDGALNAVKIISDE----- 173

Query: 938 LGIPSSCTS-DTECEVCQ 954
              P  C+  D +CE CQ
Sbjct: 174 ---PKVCSILDPDCEACQ 188


>gi|254169166|ref|ZP_04876002.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289596591|ref|YP_003483287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621901|gb|EDY34480.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534378|gb|ADD08725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 303/593 (51%), Gaps = 78/593 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E+R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  AM+ K
Sbjct: 215 EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYAAMIHK 274

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA    L   
Sbjct: 275 SGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMGVLSVH 334

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+  + +   + +   + N +  + D FM  + ++  + L +P          G
Sbjct: 335 HPDILEFITSKDS---ENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRN--------G 383

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +E                    ++I A  +W  ++T  ++TG P + F D  N + P +H
Sbjct: 384 EEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRKHPVKH 424

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + S+N C E  L         CNLGSINL     N +  +DKL   I  A+  LDNV
Sbjct: 425 LGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDKLRKVIHIAIHFLDNV 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI+  + 
Sbjct: 481 IDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFINEESH 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS++LA++RG + +++GS W                             W       K 
Sbjct: 541 RASMKLAEKRGVFPAWEGSEW-----------------------------WK------KG 565

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRD 814
           + +RN+    IAPT TI+ I G S SI+P +  +YV+  + G +   +N       K+R 
Sbjct: 566 MKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEIAKKRG 625

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
            + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D A  ++
Sbjct: 626 FYSEDLMLEIA-KSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDNAVSKT 683

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
           +NL  D  + + ++ +Y  A+ +  K  T Y  +S+    ++K+  K ++G L
Sbjct: 684 VNLRYD-ATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKAD-KAIEGIL 734



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G    +D  +I+ AI KAF+  E         + D +  + E+ + +         I
Sbjct: 7   KRSGDYVLYDRKRIANAIKKAFL--ETGEVDTPEEIADELSKIVEERIQKYE-------I 57

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             +E IQD+VE  LM+  + +  + Y++YRE R  VR A+
Sbjct: 58  PSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAK 97


>gi|221316491|ref|ZP_03598296.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 568

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 290/593 (48%), Gaps = 72/593 (12%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LS+ +   +TPTL N+G     LSSCF+ T  D L GIF    + +  +K   G+G  + 
Sbjct: 1   LSNLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFG 60

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I G  G + G++ ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DL
Sbjct: 61  KLRATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDL 120

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE--- 517
           R NTGD  +R +++ T   IPD FM++V +   + LF P E+       L D Y K+   
Sbjct: 121 RLNTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLG 180

Query: 518 -------FEIAYE-NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                   + A+  +Y    D   +   R++ A+ L ++ +    ETG P++ ++D  N 
Sbjct: 181 EKETPNPIDHAWTYHYYLCVDNNNLDK-RRVPAIELKKRYMKAQLETGIPYMFYRDTVNR 239

Query: 570 RSPQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSINL-----------LAHFANN 614
            +P  H G+++SSNLC+EI  N S    ++ET     G + +           L+    N
Sbjct: 240 NNPNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVN 299

Query: 615 QFDYDKLAS-TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           + + D +    I+  +R LDNVI +    + +A+ +N  +RA+G G  G  + L    I 
Sbjct: 300 RTEKDGVTERVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIM 359

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S +A+E   +  E I  + I AS  L +E+G+Y  F+GS W  G           E  
Sbjct: 360 WDSEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG-----------EWF 408

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +E  +N    L   EL  +     MRN    AIAPT   + I G +  IDP +  +Y + 
Sbjct: 409 EERDLNSPEWLEVKELASKY----MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFER 464

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
               DF +    LV EL Q+  +       ++Y +                     ++  
Sbjct: 465 KK--DFHL--PILVPELNQKTWFFYKPTMKMEYENEK-------------------QLAH 501

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
           +W I+  + RQK++DQA S N Y+ +    K    ++ + W  G+KT+YY RS
Sbjct: 502 LWAIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 554


>gi|253701670|ref|YP_003022859.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sp.
           M21]
 gi|251776520|gb|ACT19101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M21]
          Length = 744

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 183/620 (29%), Positives = 300/620 (48%), Gaps = 81/620 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350
           L +L  RY      G  +E     F RVA  +A  +   +K+A       +FY ++++F 
Sbjct: 18  LTVLEKRYLKRDQTGKPLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYTMMTNFE 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLRPA 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +    
Sbjct: 138 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK---- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+R+ ++ N +  I + FMK V  +  +TLF+P           ++ + A +   R   
Sbjct: 194 SDQRQLNNFNISVGITEAFMKAVDADEEYTLFNP-----------RDKQPAGKQNAR--- 239

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I   A W        E G P I F D  N  +P  H+G + S+N C E  L
Sbjct: 240 ----KVFNRIVKQA-W--------ENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++  +  
Sbjct: 287 LPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDEMT 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
            ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ RGA+ +
Sbjct: 343 RSNRKIGLGVMGWADMLIMLGIPYGSAESVELGEKVMQFINDEGHAASRQLAKTRGAFPN 402

Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           FKGS++D+ G  PI                                   RN+    IAPT
Sbjct: 403 FKGSVYDKPGAEPI-----------------------------------RNATVTTIAPT 427

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   YV+  M  +  V VN       K    + + ++  +  H 
Sbjct: 428 GTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAEH- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  + +  E + + ++ 
Sbjct: 487 GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDVEK 546

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +YR A+    K     R  S
Sbjct: 547 VYRLAYESNCKGVTIYRDGS 566


>gi|327401108|ref|YP_004341947.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
 gi|327316616|gb|AEA47232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
          Length = 749

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 185/616 (30%), Positives = 294/616 (47%), Gaps = 79/616 (12%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCS 354
           +L  RY L    G+ IE P+    RVA  +A  E     + EK A +F+ ++ +  FM +
Sbjct: 10  VLKKRYLLKDEEGNVIETPEQMLWRVANAIAQPEEKYGGDVEKTAKQFFEMMDNQLFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVDDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGGKR+GA    L   H D+E+F+  +   G  R 
Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGKRRGANMGVLNVHHPDIEDFITAKWEEGVLR- 188

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  + D FM+ +  +A +   +P                           GE 
Sbjct: 189 ---NFNISVAVTDAFMEALKNDAEYEQINP-------------------------RTGE- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V RK+ A  ++  ++   +  G P + F D  N  +P  H+G++ ++N C E  L    
Sbjct: 220 -VVRKVPARKIFNLIVEGAWRNGEPGVVFIDTINRHNPTPHIGMIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSIN+     N   D+D L   +  AVR LDNVID+N + + + +K    +R
Sbjct: 279 S----CNLGSINVSKFVKNGDIDWDWLREIVWLAVRFLDNVIDVNNYPLPEIEKMTLANR 334

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L  L IPY S E + +A++ M FI   +  AS  LA+ERG + ++KGS
Sbjct: 335 KIGLGVMGFADLLFKLKIPYDSEEGIALAEKLMSFIQEESHKASQALAEERGVFPNWKGS 394

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W++                                   K I MRN+    IAPT TI+ 
Sbjct: 395 TWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419

Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           I G S  I+P Y   + + ++    +F  +N    + L+Q  L+ + +I+ +   +GSI 
Sbjct: 420 IAGCSSGIEPVYALAFKRMHILDGEEFFEINPIFEDTLRQLGLYSDELIAKVA-EEGSIQ 478

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           +I  IP ++K+I   A +I P W +   +  QK+ D A S  + + +  + K ++  +  
Sbjct: 479 DIPEIPKEIKRIFKCALDIAPEWHVRMQAAFQKYTDNAVSKTINMPNHATRKDVEKAFLL 538

Query: 892 AWLMGLKTTYYLRSRS 907
           A+ +G K     R  S
Sbjct: 539 AYELGCKGITVYRDGS 554


>gi|188584791|ref|YP_001916336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349478|gb|ACB83748.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 752

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 298/628 (47%), Gaps = 84/628 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET---EKEKRAV-----EFYNLLSSFHF 351
           +L  RY         E P+    RVA  +A  E    +K+K+ V      F++L+ + +F
Sbjct: 10  VLEKRYLKTNEKGETENPEDMLKRVADNIAQVEKDVYQKDKQEVSKVSQNFFDLMDNQYF 69

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M ++PTL N+G    QL++CF+  + D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 70  MPNSPTLMNAGRELQQLAACFVLPIEDSMESIFEAIKNAALIHKSGGGTGFSFSNLRPKN 129

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+KV N    AV QGG R+GA    L   H D++EF+  ++    
Sbjct: 130 DIVLSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRVDHPDIQEFITCKR---- 185

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D    ++ N +  I + FM+ V Q+  ++L +P     +  L  +E              
Sbjct: 186 DSDEINNFNISVGITEEFMEAVKQDGEYSLKNPKNGQAVKTLRARE-------------- 231

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                        ++ K++ M +  G P I F D  N  +P  H+G + S+N C E  L 
Sbjct: 232 -------------VFDKIVEMAWGNGEPGIVFIDKMNENNPTPHIGEIESTNPCGEQPLL 278

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGS+NL     N   DY  L  T+ TAV  LDNVID N + + + +K++ 
Sbjct: 279 PFES----CNLGSVNLSKMVNNGAVDYQLLKETVHTAVHFLDNVIDANRYPLPEIEKTSK 334

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MGF   L  L IPY S EA+++A++ M +I   + + S ELA+ERGA+ +F
Sbjct: 335 ENRKIGLGVMGFGDMLFKLRIPYNSQEALDLAEKVMGYIDQESKAKSQELAKERGAFPNF 394

Query: 712 KGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           KGS++DQ G  PI                                   RN+    IAPT 
Sbjct: 395 KGSIYDQKGEEPI-----------------------------------RNATTTTIAPTG 419

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ +CG S  I+P +   + ++ +  D  V VN       ++   +   ++  +    G
Sbjct: 420 TISILCGTSSGIEPLFALAFTRNVLDNDKLVEVNPVFKEATEEAGCYSSELMEKVA-DKG 478

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           SI +I+ IPD +KK+  T+ +I P W ++  +  QK  D A S  + L +E   K +  I
Sbjct: 479 SIQDIDEIPDSIKKVFVTSHDISPEWHLKMQAAFQKATDNAVSKTVNLPNEADLKDVYEI 538

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKS 914
           Y  A  +  K  T Y   SR    ++ S
Sbjct: 539 YNLAHELNCKGVTVYRDGSRDTQVLQTS 566


>gi|326782457|ref|YP_004322857.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003405|gb|ADO97802.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 765

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 201/693 (29%), Positives = 323/693 (46%), Gaps = 49/693 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  DG     N +++  +VE AC GL  VS+  V   +    YDG+  SD++  LI 
Sbjct: 9   IKVVKRDGVEEPINLEKIHKMVEHACYGLASVSASQVEINSGIQFYDGIKTSDIQEILIR 68

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  + PNY  V AR LL  LR+ V       P+     E Q          IE G
Sbjct: 69  SANDLISLDNPNYQFVAARLLLFGLRKSVYGV---SPENHPKVEDQ------LSGGIESG 119

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           V  + L ++    +   + + + ++RD  F Y GL+ + D+Y +    +G   E PQ  +
Sbjct: 120 VYDQSLIKAYSSEEFAEMDSYMDHDRDMLFTYAGLRQVVDKYLVQDRSSGKIYETPQYMY 179

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           M +A  L  K  ++ +      +YN +S       TP +  +G R P  Q +SC L  V 
Sbjct: 180 MLIAATLFQKYPQETRLDYVRRYYNAISKHQINIPTPVM--AGVRTPLRQFASCVLVDVD 237

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T   
Sbjct: 238 DTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRC 297

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
             Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   N 
Sbjct: 298 CTQNGIRGGSATVHFPIWHSEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIANG 357

Query: 498 GWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKI-SAVALWRKMLTMLFE 555
             +LFSP++V  L+D +G + F+  Y +YE      +  V RKI +A  L   +L    E
Sbjct: 358 EISLFSPNDVPGLYDAFGTDAFDACYVDYE-----SDQSVPRKIVNAQELVLSLLKERAE 412

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607
           TG  ++   D CN  S  +    V+ SNLC EITL        N  + E A+C L +IN+
Sbjct: 413 TGRLYLMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPINHINDDAGEIALCILSAINV 470

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      D++ +    AVR L+ +ID   + ++ A++S    R++G+G +G    L
Sbjct: 471 -----GKLKTLDEMETLCDLAVRGLEELIDYQDYPVDAARRSTLARRSLGIGYIGLAHYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y++ EA+    +  E   ++ + AS ++AQE+G    F  + +  GV PIDS  
Sbjct: 526 AKRGLKYSAQEALSEVHDLTEAFQYYLLRASNKIAQEKGPCQDFGRTKYSDGVLPIDS-- 583

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +  D L +   +   WD L+  + T G+R+S   A  P+ + + +   +  I+P   
Sbjct: 584 -YKKDVDALVLPEYN-YDWDSLRSDITTYGLRHSTLSAQMPSESSSVVSNATNGIEPPRD 641

Query: 788 NLYVKSNMSGDF-TVVNSFLVNELKQRD--LWD 817
            L +K +  G    +V  +  N LK     LWD
Sbjct: 642 YLSIKKSKKGPLKQIVPQY--NSLKNNYTLLWD 672


>gi|289523461|ref|ZP_06440315.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503153|gb|EFD24317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 740

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 186/619 (30%), Positives = 290/619 (46%), Gaps = 83/619 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHF 351
           ++L  RY L    G+ IE P+    RVA  +A  E        +E+ A +FY +++S  F
Sbjct: 17  KVLERRYLLKDEKGNLIETPEDMLWRVASAIAKAEKAFGDEESEEEWANKFYEMMASLDF 76

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G +++ +R  G
Sbjct: 77  LPNSPTLMNAGTPTAQLSACFVLPVGDSMDEIFDALKYTALVHKSGGGTGFNFSSLRPYG 136

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+++ + T   V QGG R+GA    L   H DV +F+  +   G 
Sbjct: 137 DIVKSTKGVASGPVSFMELFDHTTDVVKQGGMRRGANMGILNADHPDVIKFVKAKIEEG- 195

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              +  + N +      FMK V  +  W L +P                           
Sbjct: 196 ---KLKNFNISVGTTQKFMKAVLNDEEWELVNP-------------------------RT 227

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  K+ A  L+  +  M ++TG P I F D     +   ++G + ++N C E  L 
Sbjct: 228 GE--VVDKVGARNLFDLLCEMAWKTGDPGIIFLDKIEASNLTPNLGSITATNPCGEQPLL 285

Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                   CNLGSINL        + D+ KL  T+R AVR LD+VI++N   I++     
Sbjct: 286 PFES----CNLGSINLSNMVLPKGEIDWSKLERTVRIAVRFLDDVIEVNQFPIKEIADMT 341

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
            + R IGLG+MG+   L  L IPY S EA+ +A + M FI+      S  LA+ RG + +
Sbjct: 342 MSTRKIGLGVMGWADVLLKLRIPYDSDEALNLARKVMSFIAKIGHEESARLAETRGPFPA 401

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +KGS W++                                   K + MRN+    IAPT 
Sbjct: 402 WKGSRWEE-----------------------------------KGMLMRNATVTTIAPTG 426

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TI+ +  VS  ++P +   Y +    G+   T VN  L++ L++  L+ EA+I +L    
Sbjct: 427 TISLVAEVSSGVEPVFALAYRRKAFEGEANLTYVNEILLDALREERLYSEALI-ELILER 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+  ++ +PD LKK+  TA +I P W +   +  Q++ D A S  + +  E S   +  
Sbjct: 486 GSLKELD-LPDSLKKVFVTAHDISPEWHVRMQAAFQEYTDNAVSKTINMPHEASVDDVKK 544

Query: 888 IYRQAWLMGLKTTYYLRSR 906
            Y  A+ +G K     R R
Sbjct: 545 AYLLAYELGCKGITIFRDR 563


>gi|332184135|gb|AEE26389.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida 3523]
          Length = 590

 Score =  253 bits (647), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 193/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FMK V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMKAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S IR  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIRDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S +A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQLHRVPFESQKAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|58532962|ref|YP_195185.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331429|emb|CAF34215.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 776

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 192/661 (29%), Positives = 316/661 (47%), Gaps = 36/661 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG++   N +++  +VEEAC  L  VS+  V   +    +DG++  +++  LI S+  LI
Sbjct: 14  DGSIEPLNLEKVHKMVEEACEDLAGVSASQVEMHSGIQFHDGITTENIQEILIRSASDLI 73

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             + PNY  V AR LL  LR++V      K    + +++  LY     +  +E      L
Sbjct: 74  SLDNPNYQYVAARLLLFGLRKQVFNKNVWKDGMPSAYDV-ALYNVTINKVYDED-----L 127

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327
            +   D D V + N + ++RD+ F Y GL+ + D+Y +    +G   E PQ  ++ +AM 
Sbjct: 128 LDKYSDEDWVKVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYETPQYMYLFIAMT 187

Query: 328 LALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           L      +++      +YN +S       TP +    T   Q +SC L    D L  IF 
Sbjct: 188 LFADYPISQRLDYVRRYYNAISKHKINIPTPIMAGVRTTLRQFASCVLIDSDDTLDSIFT 247

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +            G+G +   +RG+ + I G   K  GVIPFLK    T     Q G R 
Sbjct: 248 SDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEATVRCCTQNGIRG 307

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   N   +LFSP 
Sbjct: 308 GSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFISNGEISLFSPH 367

Query: 506 EVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
           +V  L+D +G + F+  Y  YER     +  V RK I A  L+  +L    ETG  ++  
Sbjct: 368 DVPGLYDAFGTDRFDELYVGYER-----DTSVPRKTIGAQELFLDLLKERAETGRVYVMN 422

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQF 616
            D CN  S  +    V+ SNLC EITL +        + E A+C L +IN     A    
Sbjct: 423 IDHCNSHSSFKD--KVNMSNLCQEITLPTDPLHQIDGNGEIALCILSAIN-----AGKLK 475

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + D+L      AVR L+ +ID   + ++ A+ S    R++G+G +G    L    + Y  
Sbjct: 476 NLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAHYLAKQGVKYDD 535

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           P+A ++  E  E   F+ + +S E+A+E+GA   F  + +  G+ PID+    ++V DE+
Sbjct: 536 PQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDTYK--SDV-DEI 592

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             N+ +   W+ L+  ++T G+R+S   A  P+ + + +   +  I+P    L VK +  
Sbjct: 593 VPNKLNH-DWETLRSEIRTFGLRHSTLSAQMPSESSSVVSNETNGIEPPRDYLSVKKSKK 651

Query: 797 G 797
           G
Sbjct: 652 G 652


>gi|118580911|ref|YP_902161.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           propionicus DSM 2379]
 gi|118503621|gb|ABL00104.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelobacter propionicus DSM 2379]
          Length = 744

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 184/629 (29%), Positives = 298/629 (47%), Gaps = 79/629 (12%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------FYNLLSSFH 350
           L +L  RY     NG+ +E     F RVA  +A  +   ++ A        FY +++SF 
Sbjct: 18  LTVLEKRYLRRGPNGTTLETAADMFRRVADTIAAADRSFDETADTAGLGDTFYRMMTSFE 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLRPA 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +    
Sbjct: 138 NDMVSSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIVDFIMCKA--- 194

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+++ ++ N +  + + FM+ V ++  +TL +P                   N ++   
Sbjct: 195 -DQKQLNNFNISVGLTEKFMQAVERDEEYTLVNP------------------RNGKQHGT 235

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF++I   A W        E G P I F D  N  +P   VG + S+N C E  L
Sbjct: 236 LNARKVFQRIVKQA-W--------ENGEPGIVFLDRLNRDNPTPQVGEIESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL    A    D+++L  T+R AV  LDNVI+ N + +++     
Sbjct: 287 LPYES----CNLGSINLGKFVAEGAIDWNRLKETVRNAVHFLDNVIEANSYPLQQIHDMT 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           H +R IGLG+MG+   L LL IPY+SPEAV++  + M+FI+     AS EL + RG++ +
Sbjct: 343 HGNRKIGLGVMGWADMLILLGIPYSSPEAVKLGTKVMKFINDEGRLASRELGKVRGSFPN 402

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS +D              ++D                       MRN+    IAPT 
Sbjct: 403 FTGSTFD--------------IKDAEP--------------------MRNATVTTIAPTG 428

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I   S  ++P +   Y+++ M  +  V VN       K+R  + E+++  +  H G
Sbjct: 429 TISIIANASSGVEPLFAVSYLRTVMDKNVLVEVNPHFERIAKERGFYSESLMKRIAEH-G 487

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
           ++  I  +P D++++  TA +I P   I+  +  Q   D A S  + + +  + + ++ +
Sbjct: 488 TVQGIPEVPQDVQEMFVTAHDISPNDHIQMQAAFQLHTDNAVSKTVNFPNSATIEDVENV 547

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           YR A+  G K     R  S      ST K
Sbjct: 548 YRLAYQTGCKGVTIYRDGSRDEQVLSTAK 576


>gi|297568305|ref|YP_003689649.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924220|gb|ADH85030.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 755

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 174/611 (28%), Positives = 285/611 (46%), Gaps = 80/611 (13%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNL 345
           F    + +L  RY      G  +E PQ    RVA  +A  E       + E  A+EFY L
Sbjct: 21  FSANAMTVLKRRYLKKDEQGKVLESPQRMLWRVASTIANSERLYDATADTEALAMEFYRL 80

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  ++
Sbjct: 81  MAELDFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFS 140

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ +
Sbjct: 141 RIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKV 200

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D    H+ N +  I D FM+ + +N  + L +P                     
Sbjct: 201 K----SDLDVLHNFNLSVAITDEFMRALAENGDYALINP--------------------- 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                 GEI   R  +A  L+R+++   + +G P + F D  N  +P    G + S+N C
Sbjct: 236 ----RNGEI--VRYQNAAKLFRQIVKQAWLSGEPGVVFIDRINAENPTPEAGEIESTNPC 289

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + DY++L   + TAV  LDNV+DIN + + +
Sbjct: 290 GEQPLLPYES----CNLGSINLANMVKDGKLDYERLGYCVDTAVHFLDNVVDINNYPLPE 345

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++    +R IGLG+MGF   L  L IPY+S EAVE+A+  M FI   A+ AS+ L + R
Sbjct: 346 IEQVTKQNRKIGLGVMGFADLLVQLEIPYSSQEAVELAEALMRFIDERALKASIALGKSR 405

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+ +F  S++ +                     +  + P            +RN+    
Sbjct: 406 GAFPNFPDSIYGR---------------------QDPKTP------------VRNATRTT 432

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ + G S  ++P +   +++  M  D    VN       K+   +   ++  +
Sbjct: 433 IAPTGTISILAGCSSGVEPLFAVAFLRRVMDNDELFEVNPRFEKIAKEEGFYSHELVKQI 492

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             H+G++  +E IP   ++I  TA +I P   I   +  Q+  + A S  +     + ++
Sbjct: 493 A-HNGTLAGLEEIPAKYRRIFETAHDITPENHIAIQASFQRHTNNAVSKTINFPHQATEE 551

Query: 885 LDFIYRQAWLM 895
                RQA+L+
Sbjct: 552 E---VRQAYLL 559


>gi|325265978|ref|ZP_08132664.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982616|gb|EGC18242.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
          Length = 758

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 196/673 (29%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   N  ++  +++ A +GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 6   LKVTKRDGRLEPINLDKIHRVLDWAAAGLDNVSVSQVELKSHIQFYNGIRTEDIHETIIK 65

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR+ +    Y+ P    H            R  E G
Sbjct: 66  SAADLISEETPDYQYLAARLAIFHLRK-IAYGEYQPPHLFDHVR----------RMTEMG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R + E     +   L   + +ERD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 115 KYDRHILEDYSKEEFDELNQYINHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFLY 174

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VAM L  K  +  +      FY+ +S F     TP +  SG R P  Q SSC L    
Sbjct: 175 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIM--SGVRTPTRQFSSCVLIECD 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 233 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N 
Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKNQ 352

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L++ +     EFE  Y  YE+     E    R +SA  L+  ++    
Sbjct: 353 NITLFSPNEVPGLYEAFFADQDEFERLYTQYEQD----ESIRKRTLSASDLFSILMQERA 408

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    V  V  SNLC EI L        N  + E A+C L + 
Sbjct: 409 GTGRVYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 468

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    N+F  + LA     AVR LD ++D   + I  A K+    R +G+G++ +  
Sbjct: 469 NLGAISDLNEF--EPLAD---LAVRALDALLDYQDYPIPAAYKATMNRRTLGIGVINYAY 523

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +   + E + +H + AS+ LA+E GA   F  + + QG+ PID+
Sbjct: 524 YLAKNGVKYSDGSAINLTHRTFEAMQYHLLKASMNLAKEYGACPLFNETTYAQGILPIDT 583

Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               L +  DE        L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 584 YKADLDKFCDE-----PLHLDWEGLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638

Query: 785 SYQNLYVKSNMSG 797
               + VK++  G
Sbjct: 639 PRGLVTVKASKDG 651


>gi|154498792|ref|ZP_02037170.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
 gi|150272182|gb|EDM99386.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
          Length = 784

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 169/575 (29%), Positives = 270/575 (46%), Gaps = 78/575 (13%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  FYN+++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  G
Sbjct: 56  ASRFYNMMTGLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAIKNAALIHKSGG 115

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D
Sbjct: 116 GTGFSFSRLRPRGSTVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRVDHPD 175

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+  +    +D +   + N +  I + FM+ V     + L  P              
Sbjct: 176 ILDFITCK----NDTKEITNFNISVGITEKFMQAVENGGSYELVDP-------------- 217

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                           KV   ++A  ++ K+++  ++TG P I F D  N  +P    G 
Sbjct: 218 -------------ATHKVTGTLNAREVFEKIVSSAWQTGEPGIIFLDRLNRDNPCPQQGE 264

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + S+N C E  L         CNLGSINL+ H          D DKL +TIRTAV  LDN
Sbjct: 265 IESTNPCGEQPLLPYE----ACNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDN 320

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VI++N + + +      + R IGLG+MGF   L  + IPY S + V +A E ME ++   
Sbjct: 321 VIEVNKYPLPEIDAMTRSTRKIGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIG 380

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
              S  LAQ RGA+  F  S +  G  PI                               
Sbjct: 381 HEESQALAQVRGAFPLFDESTYRNGK-PI------------------------------- 408

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQR 813
               RN+    IAPT T++ I GVS  ++P +   Y+++ M     +  N  L N L  R
Sbjct: 409 ----RNATVTTIAPTGTLSIIAGVSSGVEPVFAYAYIRNVMDNTHLIETNQILKNVLLSR 464

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E ++  +    GS+ +++ IP+D+K++   A ++ P+W ++  +  Q + D A S 
Sbjct: 465 GLYSEELMRKI-VEQGSLAHVDGIPEDIKRVFVCAHDVSPIWHVKMQAAFQAYTDNAVSK 523

Query: 874 NL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            + + +  + +++  +Y  A+ +G K T   R  S
Sbjct: 524 TVNFPNSATKEEVAEVYTLAYKLGCKGTTIYRDGS 558


>gi|148264309|ref|YP_001231015.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           uraniireducens Rf4]
 gi|146397809|gb|ABQ26442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 742

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 176/620 (28%), Positives = 295/620 (47%), Gaps = 81/620 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350
           L +L  RY      G  +E P   F RVA  +A+     +++A       +FY ++++F 
Sbjct: 17  LTVLEKRYLKRDKEGKVLETPVDMFRRVAESIAVANARFDQKADLAALADKFYAMMTAFE 76

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  
Sbjct: 77  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFEAVKYTALIHKSGGGTGFSFSRLRPA 136

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  +    
Sbjct: 137 NDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA--- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+R+ ++ N +  I + FMK V  +  + + +P                      R  +
Sbjct: 194 -DQRQLNNFNISVGITEAFMKAVDADTDYNIVNP----------------------RSGE 230

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           +  I   RK+     + +++   +E G P I F D  N  +P  H+G + S+N C E  L
Sbjct: 231 KAGILNARKV-----FNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPL 285

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     N + ++++L   I+ AV  LDNVI++N + +E+     
Sbjct: 286 LPYES----CNLGSINLGKMVQNGEVNWERLKEVIQLAVNFLDNVIEVNNYPLEQIDTMT 341

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
            ++R IGLG+MG+   L LL IPY S +A+E+ ++ M+FI+    +ASVELA+ RG + +
Sbjct: 342 RSNRKIGLGVMGWADMLILLGIPYNSMKAIELGEKVMKFINDEGHAASVELAKTRGTFPN 401

Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           FKGS++D  G  PI                                   RN+    IAPT
Sbjct: 402 FKGSVFDAPGKGPI-----------------------------------RNATVTTIAPT 426

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   +V+  M  +  + VN       K +  + E ++  +  H 
Sbjct: 427 GTISIIANASSGVEPLFAVSFVRQVMDKNILLEVNPIFEEIAKAQGFYSEELMKKIAEH- 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G++ +I  IP+ ++ I  TA +I P   I   +  QK+ D A S  + + +  + + ++ 
Sbjct: 486 GTVHDIPEIPEAVRNIFVTAHDITPEVHIAMQAAFQKYTDNAVSKTVNFPNSATFEDVEK 545

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +YR A+    K     R  S
Sbjct: 546 VYRLAYESNCKGVTIYRDGS 565


>gi|288931372|ref|YP_003435432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
 gi|288893620|gb|ADC65157.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
          Length = 756

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 180/588 (30%), Positives = 286/588 (48%), Gaps = 82/588 (13%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCS 354
           +L  RY L  + G+ IE P+    RVA  +A  E     + +  A +F+ ++    FM +
Sbjct: 10  VLKKRYLLKDDKGNVIETPEQMLWRVANAIAEAEEKYGNDPDYWAKKFFEIMDRQEFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRIRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  +   G  R 
Sbjct: 130 KSTKGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLSVHHPDIEEFITAKWEEGVLR- 188

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  + D FM+ +  +  + L +P                           GE 
Sbjct: 189 ---NFNISVAVTDKFMEALKNDEDYELINPRT-------------------------GE- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V +K+SA  ++  ++   +  G P + F D  N  +P  HVG++ ++N C E  L    
Sbjct: 220 -VVKKVSARKIFNLIVEGAWRNGEPGLIFIDEINRHNPTPHVGMIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                CNLGSINL + F N +   F++++L   +  A R LDNVID+N + I + +K   
Sbjct: 279 S----CNLGSINL-SKFVNEKEGDFEWERLREVVHIATRFLDNVIDVNSYPIPEIEKMTK 333

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MG+  AL  L IPY S EAV +A++ M+FI   +  AS  LA+ERG + ++
Sbjct: 334 GNRKIGLGVMGWADALFKLKIPYDSEEAVALAEKVMKFIQEESHKASQMLAEERGVFPNW 393

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS+W++                                   + I MRN+    IAPT T
Sbjct: 394 KGSVWEK-----------------------------------RGIKMRNATTTTIAPTGT 418

Query: 772 IANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I+ I G S  I+P +   Y ++N+    +F  +N      LK+  L+ E +I  +   +G
Sbjct: 419 ISIIAGCSSGIEPVFALAYKRTNILDGEEFFEINPIFERTLKEIGLYREDIIERVA-EEG 477

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           SI  I  IP+ ++++   A +I   W +   +  QK+ D A S  + L
Sbjct: 478 SIQRIGEIPEAVRRVFKCALDIPAEWHVRMQAAFQKYTDNAVSKTINL 525


>gi|90409250|ref|ZP_01217355.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90309648|gb|EAS37828.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 757

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 222/799 (27%), Positives = 345/799 (43%), Gaps = 91/799 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ +   +G+    + +++  ++  A  GL++VS   +   ++   YDG+  +D+   +I
Sbjct: 4   KIFVTKRNGSTECLDLEKIHRVITWASEGLENVSVSQIELNSHIQFYDGIRTNDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E  P+Y  + A   +  LR++     +  P    H        +Y    +E+
Sbjct: 64  KAAADLISEDSPDYQYLAAHLAIFHLRKKAYRR-FTPPSVFEHVSKMVSKGKYDAHLLED 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             K     E M  F        + ++RD  F Y  ++ L  +Y +   + G   E PQ  
Sbjct: 123 YTKKEF--EKMEKF--------IDHKRDLTFSYAAVKQLEGKYLVQNRVTGEIYESPQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L     +K+ R      FY+ +S+F     TP +  +G R P  Q SSC L  
Sbjct: 173 YLLVAACL-FSNYDKKIRLDYVQRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  A            G+G +   +R LG+HI G      G IPF K      
Sbjct: 230 ADDSLDSINAAASSIVKYVSQRAGIGINAGRIRALGSHIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  LF +R+  
Sbjct: 290 KSCSQGGVRGGAATIFYPLWHLEVESLLVLKNNRGIDSNRVRHLDYGVQLSRLFYQRLID 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
               TLFSP +V  L+D + +   EFE  Y  YE     G+  + +  ISAV L+  ++ 
Sbjct: 350 KKDITLFSPSDVPGLYDAFFEDQDEFERLYTLYE-----GDDSIRQNSISAVNLFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
               TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLRHIMDEEGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            ++NL A  +      D+L      AVR LDN++D   + I  AK S+   R +G+G++ 
Sbjct: 465 SALNLGAIKS-----LDELEPLSELAVRALDNLLDYQDYPIIAAKNSSMARRTLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +   + E I F+ + AS +LA+ERGA   F  + + QG+ P
Sbjct: 520 YAYYLAKNGVKYSDGSANNLTHRTFEAIQFYLLKASNKLAKERGACPKFNETRYSQGILP 579

Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           ID+    +  + DE        L W+ L+K +   G+RNS   A+ P+ T + I   +  
Sbjct: 580 IDTYKKSIDSICDE-----KYHLDWETLRKDIVKHGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I+P    + +K++  G    VV  F         LWD                   IP++
Sbjct: 635 IEPPRGFISIKASKDGILKQVVPEFEKYRENYELLWD-------------------IPNN 675

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAW 893
              I+                  QK+IDQA S N   D    P+ K     L      A+
Sbjct: 676 KGYINLVGI-------------MQKFIDQAISANTNYDPKRFPNEKVSMTTLLGDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVE 912
            MGLKT YY  +R   S E
Sbjct: 723 KMGLKTLYYHNTRDGASDE 741


>gi|326783147|ref|YP_004323544.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005565|gb|ADO99953.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 766

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 198/671 (29%), Positives = 310/671 (46%), Gaps = 47/671 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N  ++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   INVIKRNGDKDSLNLAKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIKTSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR+  L   Y+       H  +C   + + + I E 
Sbjct: 65  SASDLISLEYPNYQYVASRLLLFDLRK-ALNDHYEDHPPILEHVKKCADLDVYDKTIIEK 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                  E         + + + Y RD+ F Y G++ + D+Y +    +G   E PQ  +
Sbjct: 124 YSEDEWKE---------IDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + +A+ L  +   KEKR      +YN +S       TP +  +G R P  Q +SC L  V
Sbjct: 175 IMIALTL-FQRYPKEKRLDYVRRYYNAISKHKINIPTPVM--AGVRTPLRQFASCVLVDV 231

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T  
Sbjct: 232 DDTLDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVR 291

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
              Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R   N
Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMAN 351

Query: 497 AGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554
              +LFSP +V  L+D +G  +F+  Y  YE  AD     V RK I    L+  +L    
Sbjct: 352 QEISLFSPHDVPRLYDTFGTPDFDELYLQYE--ADES---VPRKTIGGYELFNNLLKERS 406

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606
           ETG  +I   D CN  S    +  V+ SNLC EITL        +  + E A+C L +IN
Sbjct: 407 ETGRIYIMNIDHCN--SHSSFLDKVNMSNLCQEITLPTEPINHIDDPNGEIALCILSAIN 464

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +           D++      AVR L+ +ID   + +E AK+S    R++G+G +G    
Sbjct: 465 V-----GKITQLDQMDELCDLAVRALEELIDYMQYPVEAAKRSTLARRSLGIGYIGLAHY 519

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y  PEA ++  +  E   +H + AS  LA+E+GA   F+ + +  GV PID+ 
Sbjct: 520 LAKNGVKYDDPEAWKLVHDLTESFQYHLLKASNTLAKEKGACEGFRHTKYSNGVLPIDTY 579

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               EV DE+  N+ +   W  L+  +   G+R+S   A  P+ + + +   +  I+P  
Sbjct: 580 K--KEV-DEIVPNKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635

Query: 787 QNLYVKSNMSG 797
             L VK +  G
Sbjct: 636 DFLSVKKSKKG 646


>gi|241668403|ref|ZP_04755981.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876936|ref|ZP_05249646.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842957|gb|EET21371.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 590

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  D+   +D        Q+L + Y L    S    PQ  F R ++  +  +    +R 
Sbjct: 6   YLGIDIDISKDRELSEQAQQLLTNYYCLENEPS----PQYAFARASVAYSFGDINLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  S   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  LW  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDTIKARKLWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L +E+G      G+                                  
Sbjct: 379 RIKEQAVEETLILGREKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKYLER 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK + 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQKHLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    +I++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNIFF--PAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|187931832|ref|YP_001891817.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712741|gb|ACD31038.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 590

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQTVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|33519929|ref|NP_878761.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia floridanus]
 gi|33504275|emb|CAD83167.1| ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus
           Blochmannia floridanus]
          Length = 761

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 211/789 (26%), Positives = 354/789 (44%), Gaps = 87/789 (11%)

Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPN 215
            N  ++  ++  A  GL+ +S   V   ++   Y+G+  SD++  +I ++  LI ++EP+
Sbjct: 17  INLDKIHRVINWAAKGLEKISVSQVELRSHIQFYNGIKTSDIQETIIKAAADLISQEEPD 76

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  + AR  +  LR++       +P K  +H +  +    +    ++ +     H+   +
Sbjct: 77  YQYLAARLTVFHLRKKAYGQF--EPPKLYNHVLHLVKIGKY----DKNLVNDYNHKEFEE 130

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET 333
            D       + + RD  F Y  ++ L  +Y +   + G   E  Q  ++ +A  L  K  
Sbjct: 131 MDTF-----IDHWRDMNFSYAAIKQLEGKYLVQNRVTGKIYESAQFLYILIAACLFAKYP 185

Query: 334 E--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQE 389
           E  + K    FYN +S+F    +TP +  +G R P  Q SSC L    D+L  I      
Sbjct: 186 EHIRMKYIKNFYNAISTFKISLATPIM--AGVRTPTRQFSSCVLIECDDNLDSINATSSA 243

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
                    G+G +   +R +G+ I        G IPF K       + +QGG R GA  
Sbjct: 244 IVKYVAQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAAT 303

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            +   WH+++E  L L+ N G D  R   ++    I  L  +R+      TLFSP +V D
Sbjct: 304 LFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLITGKYITLFSPSDVPD 363

Query: 510 LHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           L++ +     +FE  Y  YE+  +       RKI ++ L+  M+     TG  +I   D 
Sbjct: 364 LYENFFSDQNKFEYLYHKYEQNHNIRH----RKIKSIELFSLMMQERASTGRIYIQNADH 419

Query: 567 CNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFD 617
           CN  SP    +  +  SNLC EITL        N  + E A+C L ++NL     NN  D
Sbjct: 420 CNSHSPFNSALAPIRQSNLCLEITLPTKPLNNINDINGEIALCTLSALNLGN--INNLQD 477

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
             +LA  I   +R LD ++D   + I  A+ S    R++G+G++ +   L    + Y+  
Sbjct: 478 LSELADLI---IRALDALLDYQKYPIHAAQHSAINRRSLGIGVINYAYYLAKNKVRYSDG 534

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A  +   + E I +H + AS  LA+E+GA   FK + + QG+ PID+     +  D++ 
Sbjct: 535 SANTLTHRTFEAIQYHLLKASNNLAKEKGACIWFKDTTYSQGILPIDT---YKKDLDDI- 590

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P    L +K++ +G
Sbjct: 591 INEPLHYDWEHLRKSIKQYGLRNSTVSALMPSETSSQIANATNGIEPPRGYLSIKASKNG 650

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                       L+Q       +I D K    +   + +IP++   +             
Sbjct: 651 I-----------LRQ-------VIPDFKQLASNYELLWQIPNNQGYLKLVGI-------- 684

Query: 858 ESASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908
                 QK+IDQ+ S NL  D     G K+       D +Y  A+ +G+KT YY  +R  
Sbjct: 685 -----MQKFIDQSISTNLNYDPNRFPGSKVPIKQLIADLLY--AYKLGIKTLYYHNTRDG 737

Query: 909 TSVEKSTLK 917
           +S  + TL+
Sbjct: 738 SSETQETLQ 746


>gi|189425377|ref|YP_001952554.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           lovleyi SZ]
 gi|189421636|gb|ACD96034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter lovleyi SZ]
          Length = 745

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 181/620 (29%), Positives = 292/620 (47%), Gaps = 81/620 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350
           L +L  RY     +G  +E P   F RVA  +A       K+ + +K A  FY ++ SF 
Sbjct: 18  LTVLEKRYLKRDTSGKPLETPADMFRRVAETIAEPDKKFDKKADVKKLADRFYEMIVSFD 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRELGQLSACFVLPVGDSIEEIFDAVKFTAMIHKSGGGTGFSFSRLRPA 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G I F++V +     + QGG R+GA    L   H ++ +F+  +    
Sbjct: 138 NDLVKTTTGVSSGPISFMRVFDTATETIKQGGTRRGANMGILRVDHPNIMDFIMCKA--- 194

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D++  ++ N +  + + FM+ V ++  + L +P + S +  L  +              
Sbjct: 195 -DQKLFNNFNISVGLTEKFMEAVERDEEYDLLNPRDKSKMGTLNAR-------------- 239

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF++I         +   +E G P I F D  N  +P  HVG + S+N C E  L
Sbjct: 240 ----KVFQRI---------VNQAWENGEPGIIFLDRLNRDNPTPHVGEIESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL    +    D+ +L   I  AV  LDNVI+ N + +++     
Sbjct: 287 LPYES----CNLGSINLGRFVSEGAIDWSRLKGVIHDAVHFLDNVIEANKYPLQQIHDMT 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           H++R IGLG+MG+   L LL IPY S EAV++  + M+FI+    +AS EL Q+RG++ +
Sbjct: 343 HSNRKIGLGVMGWADMLILLGIPYNSDEAVKLGKKVMQFINDEGHAASRELGQKRGSFPN 402

Query: 711 FKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           F GS +D +G  P                                    RN+    IAPT
Sbjct: 403 FTGSTFDKKGALP-----------------------------------QRNATVTTIAPT 427

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   YVK+ M G   V VN       K+R  +   ++  +  H 
Sbjct: 428 GTISMIANASSGVEPLFAISYVKNVMDGTKLVEVNPTFEQLAKERGFYSAELMEKIAEH- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           GS+ +++ +P D++++  TA +I P   I+  +  Q   D A S  + + +  + + ++ 
Sbjct: 487 GSVHDLDEVPADVRRVFVTAHDITPEDHIQMQAAFQYHTDNAVSKTVNFPNTATIEDVEN 546

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  A+  G K     R  S
Sbjct: 547 VYMLAYKTGCKGVTIYRDGS 566


>gi|332678272|gb|AEE87401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida Fx1]
          Length = 590

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|206889365|ref|YP_002249440.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206890598|ref|YP_002249390.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741303|gb|ACI20360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742536|gb|ACI21593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 584

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 174/611 (28%), Positives = 300/611 (49%), Gaps = 78/611 (12%)

Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLSSFHFMCS 354
           +L  RY L +  G  IE P+  F RV+  +A  E   +K + E    F+ L+SS  F+ +
Sbjct: 10  VLEIRYLLKNEKGEPIENPEQLFQRVSSYIAQAEKIYKKNSFEWEEKFHELISSLRFLPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +P L N+G    QL++CF+  + D +  IF  L++ A++ +  GG G +++ +R  G  +
Sbjct: 70  SPALMNAGKPKAQLAACFVLPIEDSIESIFKTLKDAALILQSGGGTGFNFSSLRPKGDVV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +  +  + QGG R+GA    L   H D+ EF+ +++       
Sbjct: 130 RSTGGVASGPVSFMKIFDKASDIIKQGGARRGANMGVLRVDHPDIFEFIRIKRIES---- 185

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  + D FM+ + +N  + L +P           KE                 
Sbjct: 186 -LSNFNISVAVTDSFMEALFKNDYFPLINPRT---------KE----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V RK+ A  ++ +++   +ETG P + F D  N  +P  H+G + S+N C E  L    
Sbjct: 219 -VVRKVKAKDIFDEIVESAWETGDPGVIFIDTINRSNPTPHIGQIDSTNPCGEQPLLPYE 277

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                C LGS+NL  +    + D+++L   ++TA R LD+ ID+  + + + +K +  +R
Sbjct: 278 ----ACILGSLNLSKYVKEGKIDFERLEHDVKTATRFLDDAIDVTHYPVPEVEKMHKGNR 333

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MG+   L  L IPY   +A+ +A++ M+FIS  +  AS ELAQERG + +FKGS
Sbjct: 334 KIGLGIMGWADCLVELGIPYNHKKALALAEQVMQFISEKSHKASQELAQERGVFPNFKGS 393

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W++                                   K I MRN+    IAPT TI+ 
Sbjct: 394 VWEK-----------------------------------KGIPMRNATTTTIAPTGTISI 418

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S  I+P +   Y +  +  +F ++N +L+   +++  + E  I+ L+   G++  +
Sbjct: 419 IADCSSGIEPYFLLAYKQRILDTEFEIINKYLIEIAQKQGFYSEDFINQLR-QKGTLRGM 477

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAW 893
           + +P  +K++  TA EI P   I+  +  QK+ D A S  + L + + K+ +  I+  A+
Sbjct: 478 KEVPLRIKRLFKTALEITPEEHIQMQASFQKYTDNAVSKTINLSQRTRKEDVARIFILAY 537

Query: 894 LMGLKTTYYLR 904
             GLK     R
Sbjct: 538 KKGLKGITIFR 548


>gi|167627844|ref|YP_001678344.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597845|gb|ABZ87843.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 590

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 292/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  D+   +D        Q+L + Y L    S    PQ  F R ++  +  +    +R 
Sbjct: 6   YLGIDIDISKDRELSEQAQQLLTNYYCLENEPS----PQYAFARASVAYSFGDINLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  S   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  LW  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDTIKARKLWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L +E+G      G+                                  
Sbjct: 379 RIKEQAVEETLILGREKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKYLER 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK + 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQKHLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    +I++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNIFF--PAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|118497573|ref|YP_898623.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. novicida U112]
 gi|195536269|ref|ZP_03079276.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208779371|ref|ZP_03246717.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
 gi|254372934|ref|ZP_04988423.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423479|gb|ABK89869.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           novicida U112]
 gi|151570661|gb|EDN36315.1| ribonucleoside-diphosphate reductase [Francisella novicida
           GA99-3549]
 gi|194372746|gb|EDX27457.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208745171|gb|EDZ91469.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
          Length = 590

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|89256332|ref|YP_513694.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314780|ref|YP_763503.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502406|ref|YP_001428471.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010838|ref|ZP_02275769.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367667|ref|ZP_04983688.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|290952875|ref|ZP_06557496.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313920|ref|ZP_06804485.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144163|emb|CAJ79425.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129679|gb|ABI82866.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253478|gb|EBA52572.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|156253009|gb|ABU61515.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 590

 Score =  251 bits (640), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|254374387|ref|ZP_04989869.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
 gi|151572107|gb|EDN37761.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
          Length = 590

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSNVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|255514004|gb|EET90268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 762

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 318/658 (48%), Gaps = 97/658 (14%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE--FYNLLSSF 349
           L +L  RY L   +G   E P+  F RV+  +A  E     ++ E  A+E  FY+ +++F
Sbjct: 119 LIVLASRYLLKGPDGKIAESPKQLFTRVSHYIAAAEKKFGKSDDETNALEMEFYDAITNF 178

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            FM ++PTL N+GT+  QLS+CF+  V D +  IF A++  A++ +  GG G  ++ +R 
Sbjct: 179 KFMPNSPTLMNAGTKLGQLSACFVLPVGDSIVEIFDAVKYAAIIHQSGGGTGFSFSRLRP 238

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
               +  T G + G + F+KV +     V QGGKR+GA    L   H  + +F+  ++N 
Sbjct: 239 TNDMVKSTGGVASGPVSFMKVFDIATEQVKQGGKRRGANMGILRVDHPSILDFIVAKENE 298

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G  R    + N +  I D FMK +  N  ++L +P                      R  
Sbjct: 299 GTLR----NFNISVAITDEFMKALEANRDYSLVNP----------------------RNG 332

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGVVHSSNLCTE 587
                KV  K++A A+W  ++TM ++TG P + F D  N    +P   +G V S+N C E
Sbjct: 333 -----KVVGKLNARAVWNLIITMAWKTGDPGLVFLDRINSSYSNPVPTLGPVESTNPCGE 387

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
             L         CNLGSIN+      N      D+D+L    R  VR LDNVI+ N + +
Sbjct: 388 QPLYPYDS----CNLGSINMAKMLKKNDGQYDIDWDELKRITRMGVRFLDNVIESNTYPL 443

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ +      R IGLG+MG+   L  L I Y S EA+ +A++ M FI+ +A   S ELA+
Sbjct: 444 KEIEDVTKKIRRIGLGIMGWADMLIKLGIRYDSNEALMLAEKVMSFITENARKMSEELAE 503

Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG + +FK S+W + G  P                                   +RNS 
Sbjct: 504 ERGPFPAFKDSIWYKLGYKP-----------------------------------LRNST 528

Query: 763 CMAIAPTATIANIC-GVSQSIDPSYQNLYVKS---NMSGDFTVVNSFLVNELKQRDLWDE 818
              IAPT TI+ I  G SQ I+P +  +Y+++   ++  +   VN+       + + + +
Sbjct: 529 VTTIAPTGTISIIAGGASQGIEPIFSVVYMRNVHESLGSNLIEVNNEFEAMAIENNFYSD 588

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++  L     SI ++E IP +++++  TA++I P W +   +  QK++D A S  + + 
Sbjct: 589 ELMKKLAGR-VSIQDVEEIPQEIRRLFVTAYDIAPEWHVRMQAAFQKYVDNAVSKTINFP 647

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
              + + ++  Y  A+ +G K     R  S+ SV+   L+ V+ +     +T+P+S T
Sbjct: 648 SWATPQDIEKAYVLAYKLGCKGITVYRD-SSKSVQ--VLQSVEQQKT---LTEPSSKT 699



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     FD +KI  A+ KA+ +V       +  ++   +N T   V  +    K  
Sbjct: 5   VIKRDDSKVDFDRTKIENAVFKAYKSVYDSNVKEA-ELRKRAENSTTDIVKEIEATGKKE 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM      + + Y+LYR +++++RA
Sbjct: 64  --IRVEEIQDIVEKVLMLK-DQTVAKSYILYRHKKAEIRA 100


>gi|225850412|ref|YP_002730646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
 gi|225646207|gb|ACO04393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
          Length = 847

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 172/633 (27%), Positives = 307/633 (48%), Gaps = 68/633 (10%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLSSFHFMCST 355
           GL+ +YDR     N  R+++P   F ++   +   + E   R + ++Y+++    FM +T
Sbjct: 199 GLKRVYDRLN---NERRMKIP---FSKLLKMIEKGDFESYGREIDQYYSIMVEKKFMPNT 252

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N G       +CF+  + D +  I   L+  A++ K  GG G +++ +R  G  I 
Sbjct: 253 PVLVNFGNPLGMGMACFVLDMEDSIESIMETLKRAALIFKAGGGCGYNFSKLRPKGDFIS 312

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T+GKS G I F+ + +     + QGG R+GA    L + H D+EEF+  +K       +
Sbjct: 313 TTHGKSSGPIAFMTLYDKMTDVIKQGGVRRGANMGILNSDHPDIEEFIVAKKGN----VQ 368

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N + ++ + F     +N  + L +P +                            K
Sbjct: 369 LTNFNISVFLKEDFWDYYRENKPYPLINPRDG---------------------------K 401

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
           V++ ++   L+  ++   +E+  P + F D  N  +P  +  G + ++N C E+ L  + 
Sbjct: 402 VWKYVNPRNLFDTIVYEGWESAEPGLLFDDNINRYNPFLETFGRIQATNPCGEVLLYPNE 461

Query: 595 EETAVCNLGSINLLA----HFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                C+LGSINL A    ++  N    + D+D L  T+R A R LDNV+DIN +  ++ 
Sbjct: 462 S----CDLGSINLWAFIKEYYDGNGRKVEVDWDGLEKTVRIATRFLDNVLDINKYPFKEI 517

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +K    +R IGLG+MG    L  L IPY S +     +  MEF+++++   S++LA+ERG
Sbjct: 518 EKETLKNRKIGLGIMGLADFLFELEIPYNSEDGRRWMERVMEFVNYYSKEESIQLAKERG 577

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            + S+  S + +G  PI                 +  L WD+L  ++K  G+RN+    I
Sbjct: 578 KFPSYNKSFYRKGKLPIRG----------FEEKESWNLDWDKLIDKIKKHGLRNAFTTVI 627

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ I G +  I+P +  +Y K    G F  V+      +++  ++D+ +I D+  
Sbjct: 628 APTGSISMIAGTTSGIEPIFALVYEKKVTVGTFYYVDPVFEKTMEREGIFDDTLIKDVSK 687

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           ++GSI +I+ IP+  KK+  TA +I     +++ +  QKW D + S  +   E +  +  
Sbjct: 688 NEGSIQDIKYIPEKWKKVFVTAMDISAEDHVKALASVQKWTDSSVSKTINFPEDATVE-- 745

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              ++A+L+     +YL  +  T     ++KGV
Sbjct: 746 -DMKRAYLLA----HYLGCKGLTVYRYKSIKGV 773



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+P KI+ AI KA  AV  K  S +       + ++++ V  L +  K 
Sbjct: 4   KIRKRDGRIVPFNPEKITNAIWKAMQAVGEKDFSTA-------EKISKEVVRELERTLKP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +E IQD VE  L+++G  ++ + Y+LYR++R+++R  +  
Sbjct: 57  GEIPDVEQIQDIVERKLIEAGLARVAKAYILYRQKRAEIRKEKQQ 101


>gi|322832010|ref|YP_004212037.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321167211|gb|ADW72910.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 760

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 218/803 (27%), Positives = 348/803 (43%), Gaps = 89/803 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVIDWAAEGLQNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++       +P K               R +E G
Sbjct: 65  AAADLISKDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLIDQ---------VTRMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  YE YE+ A   +    +K+ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYEKYEQDASIRK----QKVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I+ AK+     R +G+G++ + 
Sbjct: 467 FNLGAIES-----LDDLEELAVLAVRALDALLDYQDYPIKAAKRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P+D
Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACQWFNETTYSQGIMPVD 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE        L WD L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDAICDE-----PLHLDWDTLRENIKTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGHISIKASKDG---ILRQVVPEYERLKDQYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWLM 895
                        ++     QK+IDQA S N   D PS         K+L      A+  
Sbjct: 678 ------------YLQLVGVMQKFIDQAISSNTNYD-PSRFPNSKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY  +R      +  +K 
Sbjct: 725 GVKTLYYQNTRDGADDVQEDMKA 747


>gi|206900775|ref|YP_002251097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
 gi|206739878|gb|ACI18936.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
          Length = 751

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 183/626 (29%), Positives = 294/626 (46%), Gaps = 83/626 (13%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSF 349
            L IL  RY      G+ IE P+  F RVA  +A    +   + +  A++  FY+++ S 
Sbjct: 10  ALMILEKRYLKKDEKGNVIETPEEMFERVAETIAKVDLIYNPKADLEAIKNTFYDMMVSL 69

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G  ++ +R 
Sbjct: 70  EFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSFSKLRP 129

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T G + G + F+KV +     + QGG R+GA    L   H D+EEF+  +   
Sbjct: 130 KGDIVKTTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRIDHPDIEEFITCKDQE 189

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G       + N +  I D FM+ V ++  + L +P                   N E   
Sbjct: 190 G----VLSNFNISVAITDSFMEAVLKDEDFPLINP------------------RNKE--- 224

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V RK+ A  L+  ++   ++ G P + F D  N ++P   VG + S+N C E  
Sbjct: 225 ------VVRKVKARDLFDLIVKQAWKNGEPGVVFIDEINRKNPTPEVGEIESTNPCGEQP 278

Query: 590 LNSSSEETAVCNLGSINL---LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           L         CNLGSINL   L       + D+DKL  T+  AV  LDNVID N + ++ 
Sbjct: 279 LLPFES----CNLGSINLGKMLKRVGEKYEIDWDKLKITVHNAVHFLDNVIDANFYPLKP 334

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  AS +LA+ER
Sbjct: 335 IEEMTKANRKIGLGVMGFYDLLVRLEVPYNTKEARDIAENIMSFIQREASEASQKLAEER 394

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +     WD+ ++    +GL                             +RN+    
Sbjct: 395 GVFPN-----WDKSIY--KDMGL----------------------------KLRNATLTT 419

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ I   S  I+P +   + +    G++  V       L + D++ E +I  + 
Sbjct: 420 IAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKEDIYSEDLIEKI- 478

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884
             +G+I +++ IP+ LK++  TA +IDP   +   +  QK++D A S  + L E +  + 
Sbjct: 479 VQEGTIQHMDEIPERLKRLFVTALDIDPEDHVLMQAAFQKYVDNAVSKTVNLRESATLED 538

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  +Y  A+ + LK     R +S  S
Sbjct: 539 IRRVYLMAYDLKLKGITVYRDKSRAS 564


>gi|56707667|ref|YP_169563.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670138|ref|YP_666695.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456734|ref|ZP_03665207.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370175|ref|ZP_04986181.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874480|ref|ZP_05247190.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604159|emb|CAG45167.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320471|emb|CAL08550.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568419|gb|EDN34073.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840479|gb|EET18915.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158829|gb|ADA78220.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 590

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 290/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +     R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAHR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|61806368|ref|YP_214727.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563912|gb|AAX46967.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 768

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 201/694 (28%), Positives = 319/694 (45%), Gaps = 43/694 (6%)

Query: 141 IAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           + PK + ++  DG+    +  R+  IVE AC GL  VS   V   +    +DG+  SD++
Sbjct: 1   MTPKEINVIKRDGSKAPLDLNRVHHIVEHACRGLAGVSESQVEISSGLQFFDGIKTSDIQ 60

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             L+ S+  LI  E PNY  V AR LL  LR++V       P +   H   C+      R
Sbjct: 61  EILVRSANDLISLEAPNYQYVAARLLLFSLRKQVYGGHPDHPTEFVEHIQSCI-----DR 115

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            + +G    +L +   D ++  L   + ++RD+ F Y G++ + D+Y +     G   E 
Sbjct: 116 NLYDG---DILKKYTND-EITELGKYIDHDRDYLFTYAGIRQVVDKYLVQDRSTGEVFET 171

Query: 317 PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372
           PQ  +M +A  L   + +  + K   ++Y+ +S       TP +   G R P  Q +SC 
Sbjct: 172 PQFMYMMIAATLFQDDDKFYRLKYVKKYYDAISKHKINIPTPIM--GGVRTPLRQFASCV 229

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D L  IF +            G+G +   +RG+ + I G   +  GV+PFLK   
Sbjct: 230 LVDVDDTLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFE 289

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R
Sbjct: 290 ATVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSVQISGLFYQR 349

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +++  TLFSP  V DL+D +G + F+  Y  YE      + KV R   A  L   +L 
Sbjct: 350 FIEDSTITLFSPHNVPDLYDAFGTDAFDELYVKYENDNSIPK-KVVR---AQELVLDLLK 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAVCNLGS 604
              ETG  +I   D CN  S  +    V  SNLC EITL ++       S E A+C L +
Sbjct: 406 ERAETGRLYIMNIDHCNSHSSFKD--KVSMSNLCQEITLPTTPLQHIDGSGEIALCILSA 463

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           IN+           D+L      AVR LD +ID   + +  A++S    R++G+G +G  
Sbjct: 464 INV-----GKLTKLDELDDLCELAVRGLDALIDYQQYPVTAAEQSTKNRRSLGIGYIGLA 518

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y S +A ++  +  E   F  +SAS +LA E+G    F  + +  G+ PID
Sbjct: 519 HYLAKNGAKYDSQKAFDLVHKLTERFQFALLSASNQLAMEKGPCGYFGKTKYADGILPID 578

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +        DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P
Sbjct: 579 T---YKNDVDEIIPNDLS-CDWEFLRGRILEYGLRHSTLSAQMPSESSSIVSNATNGIEP 634

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
               L +K +  G    +V S+   +     LWD
Sbjct: 635 PRDYLSIKKSKKGPLKQIVPSYSTLKNNYTLLWD 668


>gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 821

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 199/359 (55%), Gaps = 17/359 (4%)

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           D+    WIPDLFM+RV Q+  W+L  P +   L + +GKEFE  Y  YER+      K  
Sbjct: 476 DLFYGLWIPDLFMERVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYEREG-----KYM 530

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           RK+ A  LW  +L    ETG+P++ +KD CN +S  +H+G + SSNLCTEI   +   E 
Sbjct: 531 RKVRAQDLWFAILDAQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEV 590

Query: 598 AVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           AVCNLGS+ L    + +   FD+ +L    +  VR L+ +ID+N + +E+A+ SN  HR 
Sbjct: 591 AVCNLGSVVLPKFVSEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRP 650

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+ G   A   + +P+ S  A  +  +  E + F A++AS ELA++ G Y +F+GS 
Sbjct: 651 MGIGVQGLADAFIKMRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSP 710

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+F  D  G             + R  W  L+ RV   G+RNS  +A  PTA+ A I
Sbjct: 711 VSKGIFQFDMWG----------ETPSDRWDWASLRTRVAKHGVRNSLLLAPMPTASTAQI 760

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G ++ I+P   NLY +   +G+F VVN  L  +L +  LW  ++ + L    GSI +I
Sbjct: 761 LGFNECIEPYTSNLYARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASI 819



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 26/282 (9%)

Query: 122 REER-SDVRAAQSHSKSDAPI---------APKLKIMMDDGTLISFNSKRLEMIVEEACS 171
           +EER  D R  QS S  +            AP + ++  DG        ++   +   C 
Sbjct: 140 KEERDEDGRLQQSPSSEEEAFLLEEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCW 199

Query: 172 GLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR 229
           GL +  +   +V  +  + +Y G++  +L+T    +   +  + P+YA++ AR  +  L+
Sbjct: 200 GLDERYIDPVLVAQKVVQGIYSGVTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQ 259

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYE 288
           R    +        T  E+         R  + G  +  +HE +M + DL+    ++K+E
Sbjct: 260 RATSPSFAD-----TVEELHAYVDPKTGR--QAGYISDEVHEIVMKNRDLI--DAEVKHE 310

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF+ ++ G + L   Y L +    +E PQ  FMR+A+G+  ++ E    A E Y+L+S 
Sbjct: 311 RDFSLDFFGFKTLERAYLLKLGDKVMERPQYMFMRIAIGIHGEDLEA---AFETYHLMSE 367

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCF-LTTVPDDLYGIFGALQE 389
             F+ ++PTLF++GT  PQLSSCF LTT  D + GI+  L++
Sbjct: 368 KWFIHASPTLFHAGTCQPQLSSCFLLTTKEDSIAGIYDTLKQ 409


>gi|331035508|gb|AEC53065.1| ribonucleotide-diphosphate reductase subunit A [Synechococcus phage
           S-CRM01]
          Length = 770

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 309/674 (45%), Gaps = 44/674 (6%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  +VE AC GL  VS   +  ++    YDG++  D++  LI S+  LI  E PNY   
Sbjct: 26  KIHTMVEAACDGLSRVSPSQIEIQSQLQFYDGITTEDIQATLIRSAADLISLENPNYQYA 85

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR LL  LR+    ++Y K   +   + Q  Y       I+  V    +     D +  
Sbjct: 86  AARLLLFSLRK----SIYHKMWDSWSLQDQIAYG------IDNNVYDPAILTYYTDEEFE 135

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335
            L N + ++RDF F Y  ++ +YD+Y +     G   E PQ  +M  A     K  +  +
Sbjct: 136 ILNNYIDHDRDFLFTYAAMRQVYDKYLVQDRSTGKVYETPQFCYMLNAATTFHKYPKATR 195

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
                 +Y+ +S  +    TP +    T+  Q +SC L    DDL  IF +     +   
Sbjct: 196 LNYVKAYYDAISKHYLNLPTPNIAGVRTKTRQYASCVLIETDDDLRSIFTSATAVGLYTS 255

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
              G+G +   +R LG  +        GVIP+LK     A    Q G R G   A+   W
Sbjct: 256 QRAGIGLNPGRIRALGDKVRNGEISHTGVIPYLKHFETAAKCTTQNGLRGGGATAHFPIW 315

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H ++++ L L+ N G +  R   ++ +  +  LF +R   ++  TLFSP++V  L+D + 
Sbjct: 316 HKEIQDILVLKNNKGTEDNRVRKLDYSIQLSSLFYQRFIDDSYITLFSPNDVPGLYDAFA 375

Query: 516 -KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            +EF+  Y  YE  +D  ++    +I A  L+ +++    ETG  +I   D CN  S   
Sbjct: 376 TEEFDELYREYEANSDIPQV----RIPARQLFMELIKERAETGRIYIMNMDHCNTHS--S 429

Query: 575 HVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL--LAHFANNQFDYDKLAST 624
            +  V  SNLC EITL +           E A+C L +IN+  + H  + Q   D     
Sbjct: 430 FLVSVFMSNLCQEITLPTRPLFDIHDIYGEIALCILAAINVGKIRHLHDMQHLCD----- 484

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
              AVR LD +ID   + +  A+ S  + R++G+G +G    L    + Y   +A+    
Sbjct: 485 --LAVRALDELIDYQEYPLVAAEISTKSRRSLGVGFIGVAQYLAKKKVKYGDKQALVYMH 542

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E  E + ++ + AS  LA+E+GA S F  + +  G+ PID      +V      N   +L
Sbjct: 543 ELTEALQYYLLEASNNLAKEKGACSKFNETKYSDGLLPIDHYK--KDVDGICPPNY--KL 598

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVN 803
            W+ L++++K  G+RNS   A  P+ + + +C  +  I+P    L VK +  G    +V 
Sbjct: 599 DWEVLREKIKVFGLRNSTLSAQMPSESSSVVCNTTNGIEPPRDYLSVKKSKKGTLKQIVP 658

Query: 804 SFLVNELKQRDLWD 817
           S+   +     LWD
Sbjct: 659 SYGTLKNDYTLLWD 672


>gi|313668431|ref|YP_004048715.1| ribonucleotide reductase I alpha chain [Neisseria lactamica ST-640]
 gi|313005893|emb|CBN87349.1| ribonucleotide reductase I alpha chain [Neisseria lactamica 020-06]
          Length = 759

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 192/674 (28%), Positives = 305/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|221105132|ref|XP_002165620.1| PREDICTED: similar to ribonucleotide-diphosphate reductase large
           subunit, putative, partial [Hydra magnipapillata]
          Length = 416

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 210/378 (55%), Gaps = 12/378 (3%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R+I A  LWR +L    ETG P+I +KD  NI+S Q+++G + SSNLC EI   S   ET
Sbjct: 3   RQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLGTIRSSNLCAEIIQYSDEHET 62

Query: 598 AVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNL SI L      N     +++DKL    R AVR LD +ID N +  EK K+SN  H
Sbjct: 63  AVCNLASICLPMFIETNNNVKIYNFDKLGKVCRVAVRNLDKIIDRNYYPTEKTKRSNLRH 122

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G  G     +++   +++  A E+  +  E I F  I  S ELA++ G YS+FKG
Sbjct: 123 RPMGIGAQGLADVYNIMGFGFSTHSAYELNKKIFETIYFACIDESKELAKKFGQYSTFKG 182

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   QG       G      D+L M       W  L   VK  G+RNS   A+ PTA+ +
Sbjct: 183 SPASQGQLQFHMWGF---NEDQLLMG----FDWKTLISEVKKYGLRNSLLTALMPTASTS 235

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S+ I+P   N++ +S ++G+F V+N  L+ +L   +LW++ M   +   +GS+ N
Sbjct: 236 QIMGNSECIEPYMSNIFKRSTLAGEFIVINKHLMKDLIHLNLWNDDMRKRIIIENGSVQN 295

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           IE IP+ LK ++ TAFE   M ++  ++ R  +IDQ+QSLNL++ EP    L     ++ 
Sbjct: 296 IELIPEKLKNVYETAFETKQMHIVRQSADRGIFIDQSQSLNLFMAEPDFDVLTSALFESH 355

Query: 894 LMGLKT-TYYLRSRSATS 910
            +G KT  YY RS  A +
Sbjct: 356 DIGNKTGMYYYRSLPAIN 373


>gi|134301989|ref|YP_001121958.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049766|gb|ABO46837.1| ribonucleoside-diphosphate reductase, alpha chain [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 191/652 (29%), Positives = 290/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y   +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYAAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|270307717|ref|YP_003329775.1| ribonucleotide reductase [Dehalococcoides sp. VS]
 gi|270153609|gb|ACZ61447.1| ribonucleotide reductase [Dehalococcoides sp. VS]
          Length = 761

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 183/634 (28%), Positives = 290/634 (45%), Gaps = 84/634 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           G   E  +  F RVA  +A+ E       +   R  EFYNL++   F+ ++PTL N+G  
Sbjct: 41  GKPTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNLMTRLEFLPNSPTLMNAGRE 100

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R     +  T G + G 
Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F++  +     + QGG R+GA  A L   H D+ +F+  +   G       + N +  
Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAG----VLTNFNLSVA 216

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM+ V   A + L +P      H+                   GE  V   ++A  
Sbjct: 217 ITDKFMQAVKDGADYDLLNP------HN-------------------GE--VVSCLNATE 249

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++ K++ M ++TG P I F D  N  +P   +G + S+N C E  L         CNLGS
Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305

Query: 605 INL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           INL          +  DY KL+  I++AVR LDNVID+N   + + ++     R IGLG+
Sbjct: 306 INLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGV 365

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF   L  L IPY S  ++++A+E M F++  A   S ELA ERG + +++GS++++  
Sbjct: 366 MGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSG 425

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            P                                   MRN++C  IAPT T++ I G S 
Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450

Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P +   + ++ + G   + VN +     K+   + E +I  L   +G+  +   +PD
Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEADVPD 508

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLK 898
           + K++  TA +I P W +   +  QK  D A S  +     +G+  +  +Y+ A    LK
Sbjct: 509 EAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVADVYKMAHARNLK 568

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
                R  S      ST K  +       V +PN
Sbjct: 569 GITIYRDGSREDQPMSTGKAENKIETPAAVVNPN 602


>gi|217967765|ref|YP_002353271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
 gi|217336864|gb|ACK42657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
          Length = 749

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 292/626 (46%), Gaps = 83/626 (13%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSF 349
            L IL  RY     NG+ IE P+  F RVA  +A    + +   +  AV+  FY ++SS 
Sbjct: 10  ALMILEKRYLKKDENGNVIETPEEMFERVAETIAKVDLIYDPNADVEAVKDIFYEMMSSL 69

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G  ++ +R 
Sbjct: 70  EFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSFSKIRP 129

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T G + G + F+KV +     + QGG R+GA    L   H D+ EF+  +   
Sbjct: 130 KGDIVRSTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRVDHPDIWEFVTCKDQE 189

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G       + N +  + D FM+ V  +  ++L +P                   N E   
Sbjct: 190 G----VLSNFNISVAVTDGFMEAVLNDEEFSLINP------------------RNKE--- 224

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V ++I A  L+  ++   ++ G P + F D  N ++P   VG + S+N C E  
Sbjct: 225 ------VVKRIRAKELFDLIVEQAWKNGEPGVIFIDEINRKNPTPEVGEIESTNPCGEQP 278

Query: 590 LNSSSEETAVCNLGSINL---LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           L         CNLGSINL   L    +  + ++DKL +T+  AV  LDNVID N + ++ 
Sbjct: 279 LLPFES----CNLGSINLGRMLKKVGDKYEINWDKLRTTVHNAVHFLDNVIDANFYPLKP 334

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  AS ELA+ER
Sbjct: 335 IEEMTKANRKIGLGVMGFYDLLIRLEVPYNTKEARDIAENIMSFIQKEAREASQELAKER 394

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +     WD+ ++                              R   + +RN+    
Sbjct: 395 GVFPN-----WDKSIY------------------------------RDMGLRLRNATLTT 419

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ I   S  I+P +   + +    G++  V       L + +L+ E +I  + 
Sbjct: 420 IAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKENLYSEELIEKV- 478

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884
              G+I NI  IP+ LK++  TA +I P   +   +  QK++D A S  + L E +  + 
Sbjct: 479 IQKGTIQNITEIPEKLKRLFVTALDISPEDHVLMQASFQKYVDNAVSKTVNLREDATLED 538

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  IY  A+ + LK     R +S  S
Sbjct: 539 IRKIYLMAYELKLKGITVYRDKSRAS 564


>gi|303232582|ref|ZP_07319268.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
 gi|302481369|gb|EFL44443.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
          Length = 766

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 208/753 (27%), Positives = 338/753 (44%), Gaps = 109/753 (14%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKY---------------------ERDFAFEYL 296
           RYIE+ +  R++H   +   L Y+     Y                     E  F F  L
Sbjct: 64  RYIEQEIMPRIMHFESLPARLAYMVQHNYYDHTVINAYSTPFIQKLYAIAAEEHFEFTSL 123

Query: 297 -GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            G    Y  Y LH + G++I   + F  RV M         E+ A +    + +  F  +
Sbjct: 124 MGAMKFYIAYALHTDDGAQIL--EQFEDRVVMCAMFLANGNEELAKQLVKDMMANRFQPA 181

Query: 355 TPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           TPT  N+G  R  +  SC+L  V D +  I   +  +  L+K  GG+    T +R   A 
Sbjct: 182 TPTFLNAGKKRRGEYISCYLLRVEDTMESIARGISTSLQLSKRGGGVALCLTNLRETAAP 241

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G   ++ GV+P +K+  DT    NQ G+R+GA   YL   H D+  FLD ++   D++
Sbjct: 242 IKGFENQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEK 301

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R   ++    IPD+  +   QN    LFSP +V   +++   +  ++ E Y+       
Sbjct: 302 VRIKSLSLGVVIPDVTFRLAQQNKDMALFSPYDVKREYNVALSDLSVS-EKYDELCANPR 360

Query: 534 I-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588
           I K +  ISA   ++ +  + FE+G+P+I F+D  N  +P +  G +  SNLC+EI    
Sbjct: 361 IHKTY--ISARKFFQTIAELQFESGYPYIMFEDTVNYCNPHKRAGRIVMSNLCSEIAQVS 418

Query: 589 TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---ID 637
           T +S +E+ +         CNLGSIN+    A    D     S +R A+  LD V    D
Sbjct: 419 TPSSYTEDLSFTHVGVDVCCNLGSINI----ARAMDDAPHFGSLVRHAIFALDRVSRSSD 474

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           + C      KK N+ + A+GLG M     L   HI Y SPEAV+  D     +++HA SA
Sbjct: 475 LAC--APSVKKGNNLNHAVGLGAMNLHGFLATHHIYYNSPEAVDFVDMFFYAMAYHAFSA 532

Query: 698 SVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVR---DELAMNRTSRLPWDEL 749
           S +LAQ  G++S F  S +  G +       D+      VR    EL +   +R  W  L
Sbjct: 533 SCDLAQTYGSFSGFSNSEYADGSYFDKYTGADTAPSTPRVRALLAELGLTLPTRDDWVSL 592

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            +++K  G+ N++ MA+APT +I+ +   + S+ P                     +V+ 
Sbjct: 593 VEKIKVRGLANAHLMAVAPTGSISYLSSCTPSLQP---------------------VVSA 631

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMWLIESASRR 863
           ++ R              +G IG +  +P      D+ +     A+E+    +I   +  
Sbjct: 632 VETRK-------------EGKIGRV-YVPAYNITNDNYRYYQDGAYEVGYEAIINIVAAA 677

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++  + + + L+  Y  A+    K+ YY+R R      +  L+G +  
Sbjct: 678 QKHVDQAISLTLFMTSQATTRDLNKAYIYAFKKRCKSIYYVRIR------QDVLEGSEHL 731

Query: 923 LN--AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            N   +  +   ++ +S  +   CT  +EC+VC
Sbjct: 732 ENDEVIAGSADGAAGNSSSVNFVCTGSSECQVC 764


>gi|254169182|ref|ZP_04876017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621840|gb|EDY34420.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 178/593 (30%), Positives = 301/593 (50%), Gaps = 78/593 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E+R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  AM+ K
Sbjct: 215 EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYAAMIHK 274

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA    L   
Sbjct: 275 SGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMGVLSVH 334

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+  + +   + +   + N +  + D FM  + ++  + L +P          G
Sbjct: 335 HPDILEFITSKDS---ENKVLSNFNISVAVMDEFMDALLRDDYYPLRNPRN--------G 383

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +E                    ++I A  +W  ++T  ++TG P + F D  N + P +H
Sbjct: 384 EEV-------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRKHPVKH 424

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + S+N C E  L         CNLGSINL     N +  + KL   I  A+  LDNV
Sbjct: 425 LGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWHKLRKVIHIAIHFLDNV 480

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI+  + 
Sbjct: 481 IDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFINEESH 540

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS++LA++RG + +++GS W                             W       K 
Sbjct: 541 RASMKLAEKRGVFPAWEGSEW-----------------------------WK------KG 565

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRD 814
           + +RN+    IAPT TI+ I G S SI+P +  +YV+  + G +   +N       K+  
Sbjct: 566 MKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEIAKKGG 625

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
            + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D A  ++
Sbjct: 626 FYSEDLMLEIA-KSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDNAVSKT 683

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
           +NL  D  + + ++ +Y  A+ +  K  T Y  +S+    ++K+  K ++G L
Sbjct: 684 VNLRYD-ATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKAD-KAIEGIL 734



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G    +D  +I+ AI KAF+  E         + D +  + E+ + +         I
Sbjct: 7   KRSGDYVLYDRKRIANAIKKAFL--ETGEVDTPEEIADELSKIVEERIQKYE-------I 57

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             +E IQD+VE  LM+  + +  + Y++YRE R  VR A+
Sbjct: 58  PSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAK 97


>gi|309379221|emb|CBX22178.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica Y92-1009]
          Length = 759

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 194/674 (28%), Positives = 307/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTGAGKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|222056106|ref|YP_002538468.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
 gi|221565395|gb|ACM21367.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
          Length = 742

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 184/647 (28%), Positives = 302/647 (46%), Gaps = 82/647 (12%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFH 350
           + +L  RY     +G  +E P   F RVA  +A  +   +K+A       +F+ +++SF 
Sbjct: 17  VTVLEKRYLKRDKDGKVLESPVDMFRRVAESIAAADARFDKKADIAALADKFFAMMTSFE 76

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  
Sbjct: 77  FLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKHTALIHKSGGGTGFSFSRLRPA 136

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  +    
Sbjct: 137 NDMVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA--- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+R+ ++ N +  + + FMK V  +  + L +P                   + E+   
Sbjct: 194 -DQRQLNNFNISVGLTEEFMKAVDADREYNLINP------------------RSGEKAGS 234

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I   A W        E G P I F D  N  +P  H+G + S+N C E  L
Sbjct: 235 LNARKVFNRIVKQA-W--------ENGEPGIIFIDRLNKDNPTPHIGQIESTNPCGEQPL 285

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     + + ++ +L   I  AV  LDNVI++N + +E+     
Sbjct: 286 LPYES----CNLGSINLGKMVEHGEINWQRLKEVILLAVNFLDNVIEVNNYPLEQIDAMT 341

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MG+   L LL IPY S EA+E+ ++ M+FI+    +ASV+LA+ RG + +
Sbjct: 342 RANRKIGLGVMGWADLLILLGIPYNSKEAIELGEKIMKFINDEGHAASVQLAKVRGPFPN 401

Query: 711 FKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           FKGS++D+ G+ PI                                   RN+    IAPT
Sbjct: 402 FKGSIFDKPGMEPI-----------------------------------RNATVTTIAPT 426

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   +++  M  +  + VN       K+   + E ++  +  H 
Sbjct: 427 GTISIIANASSGVEPLFAVSFIRQVMDKNILLEVNPIFEETAKKEGFYSEELMQKIAEH- 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G++ +I  IP+ ++ +  TA +I P   I   +  QK  D A S  + + +  + ++++ 
Sbjct: 486 GTVHDIPEIPEQIRNVFVTAHDITPEVHISMQAAFQKHTDNAVSKTVNFPNSATIEEVEK 545

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +YR A+    K     R  S      ST K  D     +PV D   S
Sbjct: 546 VYRLAYETNCKGVTIYRDGSRDEQVLSTGKK-DEAPKTLPVADEKRS 591


>gi|218289142|ref|ZP_03493378.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240725|gb|EED07904.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 574

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 238/456 (52%), Gaps = 29/456 (6%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG +   +  ++   +   C   +    + + ++ +  + DG+  S++    I ++   +
Sbjct: 45  DGRIEPLSLDKIFAFLRRGCEAAEGCDPERLAADVWPQLRDGMRTSEIARVAIQAA---V 101

Query: 211 EK----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE---G 263
           EK    EP +  V AR LL           YK+  +   +     Y +++   +E    G
Sbjct: 102 EKTSVAEPGWQFVAARLLL--------LDAYKQASRNRGYR-HLGYGDFYQLIVELERIG 152

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
                + E   + ++  LA  +K ERD    Y+GL+ L DRY + +++   +E+PQ  FM
Sbjct: 153 RYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGLKQLLDRYAIRNLDNGIMELPQELFM 212

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            V+M LA+KE +K   A  FY++LS+     +TPTL N+     QLSSCF+    DDL  
Sbjct: 213 GVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQLSSCFIDMPEDDLVS 272

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+   +  A ++K+ GG+G     +R  G+ I    G S GV+P+++  N+TAV+ NQ G
Sbjct: 273 IYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNHPGASGGVVPWIRNFNNTAVSCNQLG 332

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R GA   YL+ WH D+ +FL LR N GD+R + HD+     IPDLFM+RV +   W LF
Sbjct: 333 MRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAHDIFPGVCIPDLFMRRVEERGMWYLF 392

Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P EV       L D +G+EFE  YE      +   +    +I A+ + ++++   FETG
Sbjct: 393 CPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLPRV----EIPAIEIMKRIMQSAFETG 448

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            P+I F+D  N  +P +H G+V+ SNLCTEI  N S
Sbjct: 449 TPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNMS 484


>gi|121534255|ref|ZP_01666079.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
 gi|121307025|gb|EAX47943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
          Length = 566

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 167/570 (29%), Positives = 262/570 (45%), Gaps = 79/570 (13%)

Query: 315 EMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           E P+  F RVA  +A  E     +++    E+Y +++   F+ ++P L N+G +  Q+++
Sbjct: 19  ETPEKMFWRVAEYVAEAEALYGGDRQAACQEYYAIMAGLEFLPNSPALMNAGRKQAQMAA 78

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+  V D L  IF  L+  A++ +  GG G  ++ +R  G  I GTNGK+ G + FL V
Sbjct: 79  CFVLPVDDSLGDIFDTLKHAALIHQSGGGTGFSFSRLRPKGDRIAGTNGKASGPVSFLHV 138

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +     V QG  R+GA  A L   H D+EEF+  ++    DR   ++ N +  I D FM
Sbjct: 139 YDAATEVVRQGAVRRGANMAVLRVDHPDIEEFITAKR----DRTVLNNFNLSVGITDAFM 194

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             V Q+  + L  P                              +  R++SA  L+  M 
Sbjct: 195 VAVAQDRSFALVHPRTG---------------------------RTVRQVSARRLFDLMA 227

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
            M +E G P + F D  N  +P  H+G   + N C+E  L         C LGS+NL   
Sbjct: 228 AMAWENGEPGLFFLDTVNRANPTPHLGNFEAPNPCSEQPLLPYES----CVLGSVNLAKM 283

Query: 611 FA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            A      DYD+L+  +R AVR LDN+ID N + +    ++    R IGLG+MG      
Sbjct: 284 VAADGQHLDYDRLSVVVRRAVRFLDNIIDRNWYPLPAVAEATLRTRKIGLGIMGLADLFI 343

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L IPY S +AV +  + M FI+  A   S  LA ERG + ++ GS+++  + P+     
Sbjct: 344 MLDIPYGSKQAVLLTADIMRFITAEARRESARLAAERGPFPAYPGSIYESSIGPV----- 398

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                                         RN+    IAPT TI+ I   S  I+P +  
Sbjct: 399 ------------------------------RNATVTTIAPTGTISIIANCSSGIEPLFAL 428

Query: 789 LYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +  + G     +N  ++  L +R L    +   +K H GS+ N   +P  +K++ AT
Sbjct: 429 AFSRHVLGGQVLASINPTVLAYLDKRGLLTTDVEKTIK-HQGSVRNTG-LPYHVKQVLAT 486

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           A EI P+W +   +  Q++ D A S  + L
Sbjct: 487 AHEIRPIWHVAQLAAAQRYTDNAVSKTVNL 516


>gi|261392426|emb|CAX49971.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 759

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|77919448|ref|YP_357263.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545531|gb|ABA89093.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 744

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 179/620 (28%), Positives = 287/620 (46%), Gaps = 80/620 (12%)

Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350
           L +L  RY       RI E P   F RVA  +A  ET      +    A  FY+ ++   
Sbjct: 16  LTVLKRRYLKRDQDGRILEDPADMFRRVADAVADAETRLASGQDATSLADRFYDAMTCLE 75

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  
Sbjct: 76  FLPNSPTLMNAGRELGQLSACFVLPVDDSMESIFEAIKQTALIHKSGGGTGFSFSRIRPA 135

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G I F+KV +     + QGG R+GA    L   H D+ +F+ ++K   
Sbjct: 136 NDVVLSTKGVSSGPISFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMVKK--- 192

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D     + N +  + + FMK V +   + L +P     L                    
Sbjct: 193 -DLTVLTNFNLSVGLTEAFMKAVEEGQEYDLLNPRTGEPL-------------------- 231

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                  +K+ A  ++ +++ M + +G P I F D  N  +P  HVG + ++N C E  L
Sbjct: 232 -------KKLDARKVFDRIIDMAWTSGEPGIIFLDRLNRDNPTPHVGEIEATNPCGEQPL 284

Query: 591 NSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                    CNLGSINL      + + D++KL  T++  VR LDNVI+IN + + +  + 
Sbjct: 285 LPYES----CNLGSINLSRMVTGDGEVDWEKLRDTVQLGVRFLDNVIEINRYPLPQISEM 340

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
             ++R IGLG+MG+   L LL +PY S +A+ +AD+ M FI+  A + SV+LA++RGA+ 
Sbjct: 341 TLSNRKIGLGIMGWADMLILLGLPYNSSQAIALADKLMNFITTEARATSVKLAEQRGAFP 400

Query: 710 SFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           +F GS +DQ G  P                                   +RN+ C  IAP
Sbjct: 401 NFPGSSYDQAGDGP-----------------------------------LRNATCTTIAP 425

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T TI+ I   S  ++P +   Y++  M  D  V    L   +  ++ +    +       
Sbjct: 426 TGTISIIANTSSGVEPIFAVSYIRQVMDNDVLVEVHPLFEAIAHKEGFYSPELMKAIAEK 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G+I   + IP+ ++K+  TA +I P   I   +  QK  D A S  + +    + +++  
Sbjct: 486 GTIQGFDEIPEKVRKLFVTAHDITPEDHIHMQAAFQKHTDNAVSKTVNFPHSATREEVAE 545

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +YR A+  G K     R  S
Sbjct: 546 VYRLAYKEGCKGVTIYRDGS 565


>gi|261400677|ref|ZP_05986802.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209587|gb|EEZ76042.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
          Length = 759

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 192/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L + + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNSYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGA--LNN---LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E + ++ + ASV LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|308389412|gb|ADO31732.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           alpha710]
          Length = 759

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 191/674 (28%), Positives = 304/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|261380738|ref|ZP_05985311.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
 gi|284796456|gb|EFC51803.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
          Length = 759

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 195/680 (28%), Positives = 309/680 (45%), Gaps = 55/680 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   
Sbjct: 4   ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +          +  
Sbjct: 64  IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112

Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316
           E G   R  +   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E 
Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
           PQ  ++ VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC
Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +RGLG+ I G   +  G IPF K+ 
Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   
Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  
Sbjct: 348 RLIKGGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFST 403

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           ++     TG  +I   D CN  SP   HV  VH SNLC EI L        N  + E A+
Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPHVAPVHQSNLCMEIALPTKPLDNINDPNGEIAL 463

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A   NN  + ++LA      VR LD ++D   + +  A+ +    R +G+G
Sbjct: 464 CTLSAFNLGA--LNNLDELEELAD---LTVRALDALLDYQDYPVAAARTATMNRRTLGIG 518

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG
Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578

Query: 720 VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             PID+    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I  
Sbjct: 579 KLPIDTYKKDLDAVCSEPLHYD------WESLRAGIVKYGLRNSTLTALMPSETSSQIAN 632

Query: 778 VSQSIDPSYQNLYVKSNMSG 797
            +  I+P    + VK++  G
Sbjct: 633 ATNGIEPPRGLVSVKASKDG 652


>gi|161870165|ref|YP_001599335.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis 053442]
 gi|161595718|gb|ABX73378.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           053442]
          Length = 759

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGNLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|305663588|ref|YP_003859876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
 gi|304378157|gb|ADM27996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
          Length = 877

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 212/845 (25%), Positives = 385/845 (45%), Gaps = 131/845 (15%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE-SDLE 199
           I   +K++  DG++  FN +++ + + +AC  L D +  + + E         SE S LE
Sbjct: 15  IISTVKVIKRDGSIEPFNLEKVFISISKACKKLCDRNEILSIIEILVGEIKERSEISTLE 74

Query: 200 TALIFSSRTLIEK---EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            +     R +I K    P + +V  R+ L K+ ++V    Y K                 
Sbjct: 75  ISDRIE-RIMISKAISNPKWFEVVKRYELGKIYKDV----YGK----------------- 112

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRI 314
                          S ++FD           +D    +  ++IL  RY +     G  I
Sbjct: 113 --------------RSDVEFD----------PKDLKLTFSAIKILGSRYLIKDPETGRFI 148

Query: 315 EMPQAFFMRVAMGLALKE--------------TEKEKRAVE-FYNLLSSFHFMCSTPTLF 359
           E PQ  F RV+  +A +E               ++ K   E FY LLS   F+ ++PTL 
Sbjct: 149 ETPQMLFRRVSRAIATQEYKYCIQQNNNEDLCKDRVKYWEELFYELLSDQRFLPNSPTLM 208

Query: 360 NSGTRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           N+GT+   LS+CF+  V D +      GI+ A++  A++ +  GG G D++ +R  G  +
Sbjct: 209 NAGTKLGILSACFVIPVRDSIVTPDGEGIYDAVRAQAIIFQQGGGTGFDFSELRPEGDIV 268

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+++ +     + QGGKR+GA    L  WH D+E+F+D +     D  
Sbjct: 269 STTGGIASGPLSFMRMFDVNTEVIKQGGKRRGANMGVLHVWHADIEKFIDAKSGQLKDVN 328

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA------YENYE 526
              + N +    D F++ V       L +P + +   DL    K + I       YE++ 
Sbjct: 329 -LQNFNISVGAYDYFIEAVMNGGSIPLINPRKTNLRRDLGNNSKFYAITRARHYLYEDWV 387

Query: 527 RQADRGEIK----------------------------VFRKISAVALWRKMLTMLFETGH 558
           ++    E++                            +   ++A  L+ K++   +++G 
Sbjct: 388 QEVIINELESKGGSIWLDETILLTIDEAMIIAQEEKAIVGYVNAKKLFEKIVRNAWDSGD 447

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD- 617
           P + F D  N R P  ++G ++++N C E  L         CNLGSINL  +   +++  
Sbjct: 448 PGLLFIDTINRRHPVWYLGKINATNPCGEQPLLPWES----CNLGSINLEKYVEYDEYGK 503

Query: 618 ----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
               + +LA  IR  VR +DN+ID+    + + +++    R IG+G+MG+   L  L IP
Sbjct: 504 PRIAWQRLAEDIRVIVRFMDNIIDVAKWPLPQLEEAVKRTRKIGIGVMGWHHMLIKLGIP 563

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLA 730
           Y S +A+ +A    E+I ++A  AS+ELA+ERGA+ ++    +        P++ +  +A
Sbjct: 564 YDSADALYLAYYLAEWIEYNAALASIELARERGAFPAYDPDKYRPTWLSAKPLEELLAIA 623

Query: 731 EVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +  + +      ++   ++ W+ ++   +  G+RN+   +IAPT TI+ I   S SI+P
Sbjct: 624 SIDAKPSKFILELLSSRPQIDWNTVEVLRRKYGIRNAALTSIAPTGTISIIANASPSIEP 683

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   + +    G F  V+   +  L++ +L    +I ++    GSI +I  +P  +K +
Sbjct: 684 IFAVAFERHVTVGKFIEVDPLFLEYLRKYELDSPELIEEIA-RRGSISDIPYMPRTIKLL 742

Query: 845 HATAFEIDPMWLIESASRRQKWI--DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
              A +IDP W +   +  Q+W+    ++++NL   E +   +  +Y  AW++G K    
Sbjct: 743 FKGALDIDPKWHVLHQAVWQQWVCAGVSKTVNLRF-EATVDDVRNVYLLAWMLGCKGITV 801

Query: 903 LRSRS 907
            R +S
Sbjct: 802 YRDKS 806


>gi|254369309|ref|ZP_04985321.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122259|gb|EDO66399.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 291/652 (44%), Gaps = 105/652 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L    S    PQ  F R A+  +  +    +R 
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEPS----PQYAFARAAVAYSFGDMNLAQR- 60

Query: 340 VEFYNLLSSFHFMCSTPTLFNS---GTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+   G +   L  SCFL+ VPD L G+     E   L+ 
Sbjct: 61  --IYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +       + K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAV-------SDKAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+ +       
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDDKT------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--Q 573
                               V   I A  +W  +L   + TG P++ F D  N   P  Q
Sbjct: 225 --------------------VRDVIKARKIWETILETRYRTGEPYLNFIDTANKALPKSQ 264

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G+ +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMVGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + S++  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSNIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QSLN++   P+G    ++++    AW  G K  YYLR+ ++   E  + K
Sbjct: 517 QGQSLNVFF--PAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKK 566


>gi|218768315|ref|YP_002342827.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis Z2491]
 gi|121052323|emb|CAM08653.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           Z2491]
 gi|319410560|emb|CBY90928.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
          Length = 759

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|221105290|ref|XP_002167438.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 323

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 189/305 (61%), Gaps = 11/305 (3%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR---IEMPQAFFMRVAMGLALKETEKEK 337
           L N ++Y+RD+ F+Y G++ L   Y   ++ ++   IE PQ   MRVA+G+  ++ +   
Sbjct: 27  LQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDIDS-- 84

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +E Y+L+S  +F  +TPTLFN+GTR  Q+SSCFL  + D++  IF A+++ A  +K++
Sbjct: 85  -VIETYDLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWA 143

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G   + +R  G+ I GTNG + GV+P   + N  A  +NQGG+R G++  YLE  H 
Sbjct: 144 GGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHA 203

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +F DLRKNTG+D  R  D+  A W+P LFMKRV  +  W+L  PD+   L+ ++ +E
Sbjct: 204 DIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEE 263

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +   YE YE +      K  R+I A  LWR +L    ETG P+I +KD  NI+S Q+++G
Sbjct: 264 YVKLYEMYESEG-----KYVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLG 318

Query: 578 VVHSS 582
            + SS
Sbjct: 319 TIRSS 323


>gi|225075857|ref|ZP_03719056.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
 gi|224952803|gb|EEG34012.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
          Length = 759

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 192/679 (28%), Positives = 304/679 (44%), Gaps = 53/679 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   
Sbjct: 4   ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +          +  
Sbjct: 64  IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112

Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316
           E G   R  +   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E 
Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
           PQ  ++ VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC
Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +RGLG+ I G   +  G IPF K+ 
Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   
Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  
Sbjct: 348 RLIKGGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFST 403

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           ++     TG  +I   D CN  SP    V  VH SNLC EI L        N +  E A+
Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPRVASVHQSNLCMEIALPTKPLDNINDAEGEIAL 463

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A       D D+L       VR LD ++D   + +  A+ +    R +G+G
Sbjct: 464 CTLSAFNLGA-----LNDLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIG 518

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG
Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578

Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             PID+       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   
Sbjct: 579 KLPIDTYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANA 633

Query: 779 SQSIDPSYQNLYVKSNMSG 797
           +  I+P    + VK++  G
Sbjct: 634 TNGIEPPRGLVSVKASKDG 652


>gi|300087825|ref|YP_003758347.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527558|gb|ADJ26026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 592

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 183/629 (29%), Positives = 289/629 (45%), Gaps = 93/629 (14%)

Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSF 349
            L++L  RY    + G  +E P   F RVA  +A  E      T     A EFY ++S  
Sbjct: 16  ALRVLEKRYLRRDSRGEVVETPAELFRRVADAVASAERKYASDTSVRYIADEFYRIMSGL 75

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  A + K  GG G  +  VR 
Sbjct: 76  LFLPNSPTLLNAGTTSGQLSACFVLPVEDSIEAIFEAVKYTAQIHKSGGGTGFSFAHVRP 135

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +G  + G    + G +  + V +  A  V QGG R+G     L   H D+ +F+  +   
Sbjct: 136 VGDDVDGRADAATGPVALIDVFSKAADYVRQGGIRRGCNSVVLPVDHPDIMDFIKAKA-- 193

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D     +   +  + D FM+RV     + L  P                         
Sbjct: 194 --DPLSLTNFYISVAVTDDFMRRVKTGQDYPLIYPRN----------------------- 228

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
             G+I  +  ++A A++ +++   + TG P   F D  N  +P  H+G +   + C E T
Sbjct: 229 --GQITGW--LNAGAVFDRIVDQAWSTGDPGFVFIDQINRANPTPHLGRIEIISGCGEQT 284

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           L         CNLGSINL  +    NN+   D+D L   +  AVR LDNVID+N   I +
Sbjct: 285 LLPYES----CNLGSINLAKMVKLDNNRTVVDFDTLKDVVSLAVRFLDNVIDVNKFPISR 340

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R IGLG+MGF   L+ + IPY S  AV+IA E M FI   A   S  LA+ER
Sbjct: 341 IEEMTKRTRKIGLGVMGFADMLYQMGIPYNSESAVKIAREVMRFIKDEAHRTSRLLARER 400

Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G + +FKGS++D +G+ P                                   MRN+ C 
Sbjct: 401 GPFPAFKGSIYDREGLEP-----------------------------------MRNAACT 425

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
            +APT T++ I G S  I+P +  ++V++ + G+    VN      +K   ++ E +++ 
Sbjct: 426 TVAPTGTLSIIAGCSSGIEPVFAGVFVRNILDGENLLEVNPHFEKAVKDAGVYSEELLAR 485

Query: 824 L----KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLD 878
           L      HD        +P++++KI  TA ++ P W ++  +  Q++ D A S  + +  
Sbjct: 486 LVKCNHLHDQ-----HDVPEEIRKIFVTAHQVSPEWHVKIQAAFQEFTDNAVSKTVNFAR 540

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + + ++L  ++R A+  GLK     R  S
Sbjct: 541 QATREELASVFRMAYESGLKGITVYRDDS 569


>gi|167769961|ref|ZP_02442014.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
 gi|167667795|gb|EDS11925.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
          Length = 761

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 183/626 (29%), Positives = 292/626 (46%), Gaps = 85/626 (13%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK------ETEKEKRAVEFYNLLSSFH 350
           L +L  RY     +G  IE  +  F RVA  +A        +T+    +  FY ++++  
Sbjct: 14  LTVLERRYLKKDEHGENIETVEQMFRRVADAIASADAAYSGKTDVAALSNRFYEMMTNLE 73

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  
Sbjct: 74  FLPNSPTLMNAGKELGQLSACFVLPVGDSMEEIFEAIKQAALIHKSGGGTGFSFSRLRAA 133

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA +  T G + G + F++V N    AV QGG R+GA    L   H D+ EF+D +KN  
Sbjct: 134 GATVRSTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRIDHPDILEFIDCKKNNA 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D      + N +  I + FM+ V Q   + L  P     +  L  +E             
Sbjct: 194 D----ITNFNISVGITEEFMQAVQQGNAYELVDPKTKQAVGQLDARE------------- 236

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                VF KI   A WR         G P I F D  N  +     G + S+N C E  L
Sbjct: 237 -----VFDKIVESA-WR--------NGEPGIIFLDRLNRDNVVPSQGEIESTNPCGEQPL 282

Query: 591 NSSSEETAVCNLGSINLLAHFA--NNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    CNLGSINL+      N  +  DYDKL  T+R AV  LDNVID+N + + + 
Sbjct: 283 LPYES----CNLGSINLVNMLKCENGAYAVDYDKLGRTVRDAVHFLDNVIDVNKYPLAEI 338

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             +    R IGLG+MG+   L  L +PY S EAV +A   MEFI+    + S ELA+ RG
Sbjct: 339 DVTTKQTRKIGLGVMGWSDMLAYLGVPYNSDEAVALARRVMEFITKTGRAESAELAKVRG 398

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  F+ S++  G                                      +RN+    I
Sbjct: 399 AFPLFEKSIYAGGT------------------------------------PLRNATVTTI 422

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT T++ I G S  ++P +  +++++ M G +   VN  L   L+ R L+ + ++  + 
Sbjct: 423 APTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTEMIEVNPVLKEILEARGLYSDGLMKKIA 482

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKK 884
             +GS+ +IE IP D++++   + ++ P++  +  +  Q++ D A S  + +  + + + 
Sbjct: 483 -AEGSLQHIEEIPADIRRVFVCSHDVSPLYHTKMQAAFQQFTDNAVSKTVNFKHDATIED 541

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  +Y  ++ +G K     R  S  S
Sbjct: 542 VREVYMLSYELGCKGVTIYRDGSRDS 567


>gi|294496479|ref|YP_003542972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
 gi|292667478|gb|ADE37327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
          Length = 596

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 273/586 (46%), Gaps = 78/586 (13%)

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHF 351
           G  +L  RY L    G   E P   F RVA  +A  ++    + EK   +FY +++   F
Sbjct: 20  GKTLLEKRYLLRDAEGKVAEEPGELFARVAKTIARVDSRYGYDVEKTEDDFYQVMADLEF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D L  IF +LQ+ +++ +  GG G  ++ +R  G
Sbjct: 80  LPNSPTLMNAGTELGQLSACFVLPVEDSLKSIFKSLQDMSLIHQSGGGTGFSFSNLRPKG 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  TNG + G + F+ + +     + QGG+R+GA    L   H D+ EF+  +    +
Sbjct: 140 DIVGSTNGVASGPLSFMTIFDKATDVIKQGGRRRGANMGVLRVDHPDIIEFIRAK----E 195

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  + D FM+ V+Q+  + L +P                      R    
Sbjct: 196 DEELLRNFNLSVGVTDEFMEAVSQDRDYALINP----------------------RTG-- 231

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              K+ +++ A  ++ +++T    TG P + F D  N R P   +G + S+N C E+ L 
Sbjct: 232 ---KIEKRLKAKDVFDRIVTCACRTGDPGLLFLDEINRRHPLSTIGTIESTNPCGEVPLL 288

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL         D++KL  T+ T V  LDNVID N + + +  +   
Sbjct: 289 PYES----CNLGSINLAQMVKEGAIDWEKLKQTVHTGVHFLDNVIDANKYPLPQIGQRTK 344

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MGF + L  L IPY   E +  A++ M+F    ++  SVEL ++RG++ +F
Sbjct: 345 QNRKIGLGVMGFAAMLARLGIPYDCREGIATAEKVMKFTQDESVQKSVELGEQRGSFPNF 404

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S               A  RD  A                    MRN+    +APT +
Sbjct: 405 HRS---------------ALARDYPA--------------------MRNATVNTVAPTGS 429

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           ++ I   +  I+P +   Y ++ M    T ++       ++   +   ++ ++    GS+
Sbjct: 430 LSIIANTTSGIEPMFALTYRRNVMGTRLTEIDPVFEEIARKHGFYSSQLMEEIA-GTGSL 488

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875
                IP+  ++I ATA EI P W +   +  QK +D   A+++NL
Sbjct: 489 QTSPNIPEQTRRIFATALEIQPRWHVRMQAAFQKHVDNAVAKTVNL 534


>gi|241760524|ref|ZP_04758617.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
 gi|241319028|gb|EER55530.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
          Length = 759

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 194/680 (28%), Positives = 307/680 (45%), Gaps = 55/680 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   
Sbjct: 4   ATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +          +  
Sbjct: 64  IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLYDHVK----------KLT 112

Query: 261 EEGVKAR--LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316
           E G   R  +   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E 
Sbjct: 113 EAGKYDRHIIADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYET 170

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
           PQ  ++ VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC
Sbjct: 171 PQFLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSC 227

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +RGLG+ I G   +  G IPF K+ 
Sbjct: 228 VLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMF 287

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   
Sbjct: 288 QAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYT 347

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  
Sbjct: 348 RLIKGGNITLFSPNEVPSLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFST 403

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           ++     TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+
Sbjct: 404 LMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIAL 463

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G
Sbjct: 464 CTLSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIG 518

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG
Sbjct: 519 VINYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQG 578

Query: 720 VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             PID+    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I  
Sbjct: 579 KLPIDTYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIAN 632

Query: 778 VSQSIDPSYQNLYVKSNMSG 797
            +  I+P    + VK++  G
Sbjct: 633 ATNGIEPPRGLVTVKASKDG 652


>gi|325128286|gb|EGC51170.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis N1568]
          Length = 753

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 192/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 119 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 578 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 632

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 633 PPRGLVTVKASKDG 646


>gi|121635005|ref|YP_975250.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis FAM18]
 gi|120866711|emb|CAM10463.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           FAM18]
 gi|325132506|gb|EGC55199.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M6190]
          Length = 759

 Score =  247 bits (631), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|206895118|ref|YP_002246867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737735|gb|ACI16813.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 796

 Score =  247 bits (631), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 184/631 (29%), Positives = 301/631 (47%), Gaps = 87/631 (13%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET-----EKEKRAVE--FYNLLSS 348
            L++L  RY L   NG+ +E P+    RVA GLA  ET      ++  +VE  F+++L  
Sbjct: 9   ALRVLEQRYLLRDENGNIVETPEQLMHRVAHGLAQIETVWGATSEQISSVEQDFFDILWK 68

Query: 349 FHFMCSTPTLFNSG-TRHPQ------LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
             F+ +TPTLF++G  + P+      +S+C +  + D + GIF  L + A + +  GG+G
Sbjct: 69  RDFLPNTPTLFHAGLPKDPKYRGRRFMSACIVLPIEDSIDGIFKTLWDAAKIMQAGGGVG 128

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G+ +  + GKS G + F+ + +     V QGGKR+GA    L   H D+ E
Sbjct: 129 YAFSRLRPKGSLVKSSGGKSSGPVSFMHIYDVMVDVVAQGGKRRGAQMGVLNVHHPDILE 188

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+D +K     +   H+ N +  + + F++   ++  + L +P     + +L  +E    
Sbjct: 189 FIDAKKENTSGQGPLHNFNISVAVTEEFVQAYKEDTTFKLVAPHTGEVVGELNARE---- 244

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                         V  KI+  A WR        TG P I F D  N +      G + +
Sbjct: 245 --------------VMHKIAENA-WR--------TGDPGIIFIDRIN-QLDYLDDGRIEA 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           Q+D++K   TIR AVR LDNVI+
Sbjct: 281 TNPCGEQPLPPYGS----CNLGSINLKHMLKKTDSGYQWDWEKFQRTIRLAVRFLDNVIE 336

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + I + +      R IGLG+MG+  AL LL IPY S EA+E A +   F+   +  A
Sbjct: 337 ANDYPIPELEDYAKKARRIGLGVMGWADALSLLGIPYDSEEALEEARKVGAFLKEKSHLA 396

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELAQERG +  +  S W +   P                                   
Sbjct: 397 SQELAQERGVFEFYDQSKWKELGIP----------------------------------- 421

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN+    IAPT T++ +  V+  I+P +   + +   +G F  V   L++ LK+R+L+ 
Sbjct: 422 MRNAAVTTIAPTGTLSILANVNSGIEPYFALAFERKITAGTFHEVQPTLLDVLKERELYS 481

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E ++  +  ++G + ++E +P+D++    TA E+ P W +   +  Q+ ID + S  + L
Sbjct: 482 EELVQRIIENEGKLRDLEDLPEDIRNAFPTAMEVAPEWHVRMQAAWQENIDSSISKTVNL 541

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             + + + ++ IY  A+ +G K+    R +S
Sbjct: 542 PYQSTVEDIENIYLLAYELGTKSITVYRDKS 572


>gi|254805094|ref|YP_003083315.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
 gi|254668636|emb|CBA06263.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
          Length = 759

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|325144566|gb|EGC66865.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240013]
          Length = 764

 Score =  247 bits (630), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 197/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 12  LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 72  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 121 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 413

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 473

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
           +P    + VK++  G    VV  F   +     LW
Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 677


>gi|294787789|ref|ZP_06753033.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294484082|gb|EFG31765.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 758

 Score =  247 bits (630), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 191/673 (28%), Positives = 304/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   +G L   N  ++  +++ A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 6   LKVTKRNGQLEPINLDKIHRVLDWAAEGLNNVSVSQVELKSHIQFYNGIHTKDIHETIIK 65

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR+ +    Y  P    H            + +  G
Sbjct: 66  SAADLISEETPDYQYLAARLAIFHLRK-IAYGDYTPPHLFDH----------VNKLVASG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L     + +   L   + +ERD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 115 KYDKHLLSDYTESEFNELNQYIDHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFLY 174

Query: 322 MRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VAM L  K  +T +      FY+ +S F     TP +  +G R P  Q SSC L    
Sbjct: 175 ILVAMCLFAKYPQTTRLDYVKRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIECD 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 233 DNLDSINATTSAIVKYVSQRAGIGINAGHIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N 
Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINRLLYTRLIKNQ 352

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L++ +     EFE  Y  YE+     E    R ++A  L+  ++    
Sbjct: 353 NITLFSPNEVPGLYEAFFADQDEFERLYTQYEQT----ESIRKRTVAASDLFSILMQERA 408

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L + 
Sbjct: 409 GTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAF 468

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    N+F  + LA     AVR LD ++D   + +  AKK+    R +G+G++ +  
Sbjct: 469 NLGAITDVNEF--EPLAD---LAVRALDALLDYQDYPVLAAKKATMNRRTLGIGVINYAY 523

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +   + E + ++ + AS+ LA+E GA   F  + + QG+ PID+
Sbjct: 524 YLAKNGVKYSDGSAISLTHRTFEAMQYYLLKASMNLAKEYGACPLFNETTYAQGILPIDT 583

Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               L +  DE        L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 584 YKADLDKFCDE-----PLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638

Query: 785 SYQNLYVKSNMSG 797
               + VK++  G
Sbjct: 639 PRGLVTVKASKDG 651


>gi|15677158|ref|NP_274311.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis MC58]
 gi|7226531|gb|AAF41667.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis MC58]
 gi|316984081|gb|EFV63059.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
 gi|325134465|gb|EGC57110.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M13399]
 gi|325140482|gb|EGC63003.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis CU385]
 gi|325205933|gb|ADZ01386.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M04-240196]
          Length = 759

 Score =  247 bits (630), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 197/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
           +P    + VK++  G    VV  F   +     LW
Sbjct: 638 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 672


>gi|325204294|gb|ADY99747.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240355]
          Length = 753

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 304/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYIRLIKG 346

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 578 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 632

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 633 PPRGLVTVKASKDG 646


>gi|304387411|ref|ZP_07369602.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338504|gb|EFM04623.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 764

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 12  LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 72  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 129

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 130 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 181 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 413

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 473

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 643 EPPRGLVTVKASKDG 657


>gi|329119973|ref|ZP_08248645.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463886|gb|EGF10200.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 759

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/678 (28%), Positives = 306/678 (45%), Gaps = 51/678 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   
Sbjct: 4   AENLKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI +E P+Y  + AR  +  LR+ +    ++ P    H +          +  
Sbjct: 64  IIKAAADLISQETPDYQYLAARLAIFHLRK-IAYGQFEPPHLFDHVK----------KLT 112

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           E G   R + E     +   L   + + RD  F Y  ++ L  +Y +    +R   E PQ
Sbjct: 113 EAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172

Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
             ++ VAM L   +  K+ R      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 173 FLYVLVAMCL-FSKYPKDTRLNYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +RGLGA I G   +  G IPF K+   
Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGAEIRGGEAQHTGCIPFFKMFQA 289

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+
Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++
Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLM 405

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C 
Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++
Sbjct: 466 LSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVI 520

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  
Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580

Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PID+    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +
Sbjct: 581 PIDTYKKDLDAVCSEPLLCD------WESLRADIVEHGLRNSTLTALMPSETSSQIANAT 634

Query: 780 QSIDPSYQNLYVKSNMSG 797
             I+P    + VK++  G
Sbjct: 635 NGIEPPRGLVTVKASKDG 652


>gi|297250514|ref|ZP_06864463.2| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838834|gb|EFH22772.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 764

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 195/675 (28%), Positives = 308/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 12  LKVTKRDGRLEAIDLDKIHRVVAWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H + +  Y   + R+I E 
Sbjct: 72  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK-KLTYAGKYDRHILED 129

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 130 Y-------SREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 358 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 413

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N    E A+C L +
Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 473

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 528

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 643 EPPRGLVTVKASKDG 657


>gi|227878536|ref|ZP_03996470.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861870|gb|EEJ69455.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 722

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 188/655 (28%), Positives = 312/655 (47%), Gaps = 78/655 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL S + 
Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +V+ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732
                  I++HA   S +LA++ GA+  FK S +          D+ V P      + E+
Sbjct: 491 TGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEI 548

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +
Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ +N+                             D+ +     A+E+ 
Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           P  +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694


>gi|254670479|emb|CBA06178.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha153]
          Length = 759

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|83589985|ref|YP_429994.1| ribonucleotide-diphosphate reductase subunit alpha [Moorella
           thermoacetica ATCC 39073]
 gi|83572899|gb|ABC19451.1| Ribonucleotide reductase large subunit [Moorella thermoacetica ATCC
           39073]
          Length = 765

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 183/620 (29%), Positives = 287/620 (46%), Gaps = 86/620 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVA---------MGLALKETEKEKRAVEFYNLLSSFH 350
           IL  RY    NG  +E P+  F RVA            AL E + E+ A  FY L++S+ 
Sbjct: 10  ILEKRYLKKENGVPVETPEEMFRRVAAAVAGAERIFNPALTEAQVEEYADRFYRLMTSWD 69

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  
Sbjct: 70  FLPNSPTLMNAGRELGQLSACFVLPVDDSMDAIFTAVKDAALIHKSGGGTGFSFSRLRPK 129

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            + +  T G + G + F+KV N    A+ QGG R+GA    L   H D+ EF+  ++N  
Sbjct: 130 NSPVRSTGGVASGPVSFMKVFNAATEAIKQGGTRRGANMGILRVDHPDILEFISCKENNN 189

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +      + N +  +   FM  + ++               D Y  +FE           
Sbjct: 190 E----LTNFNISVGLTREFMDALARD---------------DYYELKFEG---------- 220

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V++++ A  ++ +++   +  G P I F D  N  +P   +G + ++N C E  L
Sbjct: 221 ----RVYQRLKAQEVFAEIVNHAWANGEPGIIFLDRLNEDNPTPELGEIEATNPCGEQPL 276

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+NL     +   ++DKLA T+R AVR LDNVI+IN   +EK     
Sbjct: 277 LPYE----ACNLGSVNLANMVRDGGVNWDKLADTVRLAVRFLDNVIEINEFPLEKISVMV 332

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MG+   L  L +PY S EAVE+  + M FI   A  AS +LA ERG++ +
Sbjct: 333 RGNRKIGLGVMGWADMLFQLRLPYDSEEAVELGRKVMAFIQKEAHGASRDLAGERGSFPN 392

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
              S++                       R  +L              RN+ C  IAPT 
Sbjct: 393 IDKSIY-----------------------RGQQL--------------RNATCTTIAPTG 415

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM-ISDLKYHD 828
           TI+ I G +  I+P +   Y K+ + G   V VN      +++    ++A  I +     
Sbjct: 416 TISMIAGTTSGIEPVFALAYTKNVLDGASLVEVNPVFQAYVEENFPPEQARSIFNRIAAG 475

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
             +  IE IP +++++  TA EI P W I   +  Q   D A S  + +  E + + +  
Sbjct: 476 ARVSEIEYIPPEMRRVFVTALEISPEWHIRMQAAFQASTDNAVSKTVNFPSEATREDVRR 535

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
            Y  A+ +G K     RS S
Sbjct: 536 AYELAYQLGCKGVTVYRSGS 555


>gi|194098863|ref|YP_002001927.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934153|gb|ACF29977.1| Ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           gonorrhoeae NCCP11945]
 gi|317164438|gb|ADV07979.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 764

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 12  LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 71

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 72  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KITDAG 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 121 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 180

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 181 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 237

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 238 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 297

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 298 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 357

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 358 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 413

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N    E A+C L +
Sbjct: 414 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 473

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 474 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 528

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 529 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 588

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 589 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 643 EPPRGLVTVKASKDG 657


>gi|325138280|gb|EGC60849.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis ES14902]
 gi|325142422|gb|EGC64826.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis 961-5945]
 gi|325198445|gb|ADY93901.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis G2136]
          Length = 753

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 191/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 170 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 631

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 632 EPPRGLVTVKASKDG 646


>gi|59801041|ref|YP_207753.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA 1090]
 gi|240013943|ref|ZP_04720856.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI18]
 gi|240121512|ref|ZP_04734474.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID24-1]
 gi|240128433|ref|ZP_04741094.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268686828|ref|ZP_06153690.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293398905|ref|ZP_06643070.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
 gi|59717936|gb|AAW89341.1| putative ribonucleotide reductase I alpha chain [Neisseria
           gonorrhoeae FA 1090]
 gi|268627112|gb|EEZ59512.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610319|gb|EFF39429.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
          Length = 759

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKEARLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N    E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|239999149|ref|ZP_04719073.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|240080504|ref|ZP_04725047.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|240115884|ref|ZP_04729946.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID18]
 gi|240123730|ref|ZP_04736686.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID332]
 gi|240125921|ref|ZP_04738807.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-92-679]
 gi|260440301|ref|ZP_05794117.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI2]
 gi|268594983|ref|ZP_06129150.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268596638|ref|ZP_06130805.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268601558|ref|ZP_06135725.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268682360|ref|ZP_06149222.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268684518|ref|ZP_06151380.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291043594|ref|ZP_06569310.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
 gi|268548372|gb|EEZ43790.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268550426|gb|EEZ45445.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268585689|gb|EEZ50365.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268622644|gb|EEZ55044.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268624802|gb|EEZ57202.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291012057|gb|EFE04046.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
          Length = 759

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KITDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N    E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|254478745|ref|ZP_05092114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035310|gb|EEB76015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
          Length = 724

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 172/579 (29%), Positives = 283/579 (48%), Gaps = 67/579 (11%)

Query: 299 QILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           ++  DRY L    G  +E  P+  F RVA  +A  E E+E     FY ++S + F+    
Sbjct: 11  KVFLDRYALKDREGKPVEKKPEEMFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGR 66

Query: 357 TLFNSGT-RHPQLSSCFLTTVP--------DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            L  +GT R     +CF+  V         D    I   + +   +    GG+G +W+ +
Sbjct: 67  ILAGAGTGREVTYFNCFVIPVEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTL 126

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA++ G  G S G + ++  AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K
Sbjct: 127 RPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK 186

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  +    N +  + D FM+ V Q+  W L  PD     H  Y  E++     +  
Sbjct: 187 ----DLTKMQQANLSVAVSDAFMEAVAQDKMWKLEFPDTS---HPNYDAEWKGDLNEW-- 237

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +A      V+++I A  LW K++T  +E+  P + F +  N  S   ++  + S+N C E
Sbjct: 238 KAKGYPTVVYKEIPARELWNKIVTAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGE 297

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           + L    E   VCNLG+INL+A   N + ++++L  T++ AVR LDNV+D+  + + + K
Sbjct: 298 LGL----EPYGVCNLGAINLVAFVENGRINFEELEETVKIAVRFLDNVLDLGAYVLPQNK 353

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLGLMG   AL L+++ Y S E+++  +E ++ I   A  ASVELA+E+G 
Sbjct: 354 EMAQKLRRVGLGLMGLADALILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGP 413

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F    + +G F                     RLP D ++  +   G+RN+  +  A
Sbjct: 414 FPEFVADKYLKGQF-------------------IQRLPKD-IRDEIAKYGIRNATILTQA 453

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV----------VNSFLVNELKQRDLWD 817
           PT T + + GVS  I+P++   YV+ + +G  TV          V++  V   +   +  
Sbjct: 454 PTGTTSILAGVSSGIEPNFAKEYVRKDRTGTHTVKHWLADYPAFVSAHEVTPEEHVKM-- 511

Query: 818 EAMISDLKYHDGSIGNIERIP-----DDLKKIHATAFEI 851
           +A++   KY D SI     +P     DD+  I+  A+E+
Sbjct: 512 QAVLQ--KYIDSSISKTINLPRTATVDDIDNIYRLAYEL 548


>gi|325200081|gb|ADY95536.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
          Length = 753

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 196/695 (28%), Positives = 311/695 (44%), Gaps = 52/695 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 170 VLVAMCL-FSKYPKEARLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++   
Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQER 402

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 631

Query: 783 DPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLW 816
           +P    + VK++  G    VV  F   +     LW
Sbjct: 632 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 666


>gi|161508075|ref|YP_001578042.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus DPC 4571]
 gi|160349064|gb|ABX27738.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 729

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 187/654 (28%), Positives = 310/654 (47%), Gaps = 76/654 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 92  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 150

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 151 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 210

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 211 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 270

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 271 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 327

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 328 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 384

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL S + 
Sbjct: 385 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 440

Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +V+ L+ V    D++C      KK N  +RAIGLG M     L   HI Y SPEAVE  
Sbjct: 441 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 498

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733
                 I++HA   S +LA++ GA+  FK S +          D+ V P      + E+ 
Sbjct: 499 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 556

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  + 
Sbjct: 557 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 616

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             +     V ++ +N+                             D+ +     A+E+ P
Sbjct: 617 EAALGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 647

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +I+  +  QK++DQ+ SL L+L D  + + L+  Y  A+     + YY+R R
Sbjct: 648 NAIIDITAAAQKYVDQSISLTLFLEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 701


>gi|326784481|ref|YP_004325028.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004514|gb|ADO98906.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 767

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 218/798 (27%), Positives = 346/798 (43%), Gaps = 101/798 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++K++  DG   + N +++  +VE AC GL  VS   V   +    +DG+   D++  LI
Sbjct: 9   EIKVVKRDGEQTTLNLEKVHKMVEHACEGLAGVSESAVEINSGLQFFDGIETKDIQEILI 68

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V      K      H   C         I++
Sbjct: 69  RSANDLITLENPNYQYVAARLLLFGLRKSVYNGHPDKHPILKDHVENC---------IKK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           GV    +     + +   L   + ++RDF F Y G++ + D+Y +     G   E PQ  
Sbjct: 120 GVYDGEVLAKFNEEEWEKLNGYIDHDRDFLFTYAGIRQVTDKYLVQDRSTGEIFETPQFM 179

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           +M +A+ L  ++ +K  R     ++Y+ +S       TP +  +G R P  Q +SC L  
Sbjct: 180 YMMIAVTL-FQDDDKFYRLEYIKKYYDAISKHKINIPTPIM--AGVRTPIRQFASCVLVD 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF              G+G +   +RG+ + I G   +  GV+PFLK    T 
Sbjct: 237 LDDTLDSIFSGDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKLESTV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
               Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F +R   
Sbjct: 297 RCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIT 356

Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           N   TLFSP +V  L+D +G + F+  Y  YE  +D    K    ISA  L   +L    
Sbjct: 357 NGTITLFSPHDVPGLYDAFGSDSFDELYTQYE--SDESIPK--STISAQELILDLLKERA 412

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVC-----NL 602
           ETG  ++   D CN  S  +    V  SNLC EITL +        + E A+C     N+
Sbjct: 413 ETGRIYLMNIDHCNSHSSFKD--KVSMSNLCQEITLPTDPLQHIDGNGEIALCILSAINV 470

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           G IN L          D+L      AVR LD +ID   + ++ A++S    R++G+G +G
Sbjct: 471 GKINKL----------DELDELCDLAVRGLDALIDYQQYPVKAAEQSTKNRRSLGIGFIG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L   +  Y SPEA ++  +  E   +  +++S  L+ E+G    F  + +  G+ P
Sbjct: 521 LAHYLAKNNAKYESPEAYDLVHKLTERFQYALLTSSNRLSMEKGPCGYFGKTKYADGILP 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +  DE+  N  S   W+ L+ R+   G+RNS   A  P+ + + +   +  I
Sbjct: 581 IDT---YKKDVDEIIPNDLS-CDWEFLRGRISEYGLRNSTLSAQMPSESSSVVSNATNGI 636

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    L +K +  G    VV S+   +     LWD                   +PD+ 
Sbjct: 637 EPPRDYLSIKKSKKGPLKQVVPSYGSLKNNYTLLWD-------------------MPDNT 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYR 890
             I+  A               QK+ DQA S N   +  +            K L   Y+
Sbjct: 678 GYINVVAI-------------MQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYK 724

Query: 891 QAWLMGLKTTYYLRSRSA 908
             W    KT+YY  +  A
Sbjct: 725 YGW----KTSYYQNTYDA 738


>gi|298368553|ref|ZP_06979871.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282556|gb|EFI24043.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 759

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +      +Y    IE+ 
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHIIED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 ILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGLG+ I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTIYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|294669613|ref|ZP_06734680.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308526|gb|EFE49769.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 759

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/678 (28%), Positives = 308/678 (45%), Gaps = 51/678 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   
Sbjct: 4   AASIKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +      +Y    I
Sbjct: 64  IIKAAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHII 122

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           E+         S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E PQ
Sbjct: 123 ED--------YSQEEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172

Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
             ++ VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 173 FLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +RGLG+ I G   +  G IPF K+   
Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQA 289

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+
Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++
Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLM 405

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C 
Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++
Sbjct: 466 LSAFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVI 520

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  
Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580

Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PID+    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +
Sbjct: 581 PIDTYKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANAT 634

Query: 780 QSIDPSYQNLYVKSNMSG 797
             I+P    + VK++  G
Sbjct: 635 NGIEPPRGLVTVKASKDG 652


>gi|240016385|ref|ZP_04722925.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA6140]
 gi|240113128|ref|ZP_04727618.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae MS11]
 gi|240118182|ref|ZP_04732244.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID1]
 gi|254493924|ref|ZP_05107095.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268599211|ref|ZP_06133378.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268603897|ref|ZP_06138064.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
 gi|226512964|gb|EEH62309.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268583342|gb|EEZ48018.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268588028|gb|EEZ52704.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
          Length = 759

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 305/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYNHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKEVRLGYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N    E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|332970338|gb|EGK09330.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella kingae
           ATCC 23330]
          Length = 758

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 219/792 (27%), Positives = 344/792 (43%), Gaps = 91/792 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   +G+L + N  ++  +++ A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 6   LKVTKRNGSLEAINLDKIHRVLDWAAEDLNNVSVSQVEMKSHIQFYNGIRTQDIHETIIK 65

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR+ +    Y  P    H        +Y    +++ 
Sbjct: 66  SAADLISEDTPDYQYMAARLAIFHLRK-IAYGDYTPPHLFDHVTKLTEAGKYDPHILQDY 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
            +A        +FD +     + ++RD  F Y  ++ L  +Y +    S+   E PQ  +
Sbjct: 125 TRA--------EFDEI--NQYIDHDRDLTFSYAAVKQLEGKYLVQNRVSKQIYESPQFLY 174

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           M VAM L  K  +  +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 175 MLVAMCLFAKYPKATRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECD 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 233 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 292

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N 
Sbjct: 293 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLLYTRLIKNQ 352

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L++ +     EFE  Y  YE      +    R +SA  L+  ++    
Sbjct: 353 DITLFSPNEVPGLYEAFFADQDEFERLYTQYENDPTIRK----RTMSASDLFSILMQERA 408

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L + 
Sbjct: 409 GTGRIYIQNVDHCNTHSPFNPKVAPVRQSNLCLEIALPTKSLNNINDENGEIALCTLSAF 468

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    N  +++ LA      VR LD ++D   + IE A+K+    R +G+G++ +  
Sbjct: 469 NLGA--IENLDEFEPLAD---LTVRALDALLDYQDYPIEAARKATMNRRTLGIGVINYAY 523

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  + + QG+ PID+
Sbjct: 524 YLAKNGVKYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFGETTYSQGILPIDT 583

Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               L +  DE        L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 584 YKADLDKFCDE-----PLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEP 638

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + VK++  G    VV  F   + +   LW       +  +DG              
Sbjct: 639 PRGLVTVKASKDGILKQVVPEFDRLKSQYETLW------QMGGNDG-------------- 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKL-DFIYRQAWL 894
                        ++     QK+IDQA S N   D         P  + L D +   A+ 
Sbjct: 679 ------------YLKLVGVMQKFIDQAISANTSYDPTRFEGGRVPMNQMLKDLL--SAYK 724

Query: 895 MGLKTTYYLRSR 906
            GLKT YY  +R
Sbjct: 725 YGLKTLYYHNTR 736


>gi|261364562|ref|ZP_05977445.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567129|gb|EFC88689.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
          Length = 759

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +      +Y    IE+ 
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFEHVKKLTDAGKYDRHIIED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 ILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGLG+ I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCSEPLLCD------WESLRSDIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|269139683|ref|YP_003296384.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|267985344|gb|ACY85173.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|304559552|gb|ADM42216.1| Ribonucleotide reductase of class Ia, alpha subunit [Edwardsiella
           tarda FL6-60]
          Length = 760

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 223/795 (28%), Positives = 345/795 (43%), Gaps = 91/795 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H           R +E G
Sbjct: 65  AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLVEMG 113

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A LL +   D +   +   L + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 114 KYDAHLLTDFSRD-EFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           +M VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YMLVAACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     +FE  Y  YE+ +   +    RKI AV L+  M+  
Sbjct: 350 GGEITLFSPSDVPGLYDAFFADQNQFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A   ++Q D ++LA+    AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGA--IDSQDDLEELAT---LAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPI 580

Query: 724 DSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS    L A   + L  +      W+ L+  +   G+RNS   ++ P+ T + I   +  
Sbjct: 581 DSYKKDLDAICSEPLHYD------WETLRAEIVRDGLRNSTLSSLMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + +K++  G    V                            +   ER+ D  
Sbjct: 635 IEPPRGYISIKASKDGILRQV----------------------------VPEYERLKDAY 666

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWL 894
           + + A       + L+      QK+IDQ+ S N   D    PSG    K+L      A+ 
Sbjct: 667 ELLWAMPGNDGYLQLV---GLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSAT 909
           +G+KT YY  +R   
Sbjct: 724 LGVKTLYYQNTRDGA 738


>gi|327399024|ref|YP_004339893.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
 gi|327181653|gb|AEA33834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
          Length = 725

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 287/623 (46%), Gaps = 83/623 (13%)

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLA-------LKETEKEKRAVEFYNLLSS 348
            L +L  RY     +G+ IE P+    RVA  +A         + E EK   EF +++S 
Sbjct: 7   ALIVLKSRYLQKDSDGNIIETPEQLIERVAKAIAKADENYSATKEEIEKTTNEFMDVMSE 66

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ +TPTL N+G    QLS+CF+  + D +  IF A++  A++ K  GG G  ++ +R
Sbjct: 67  LKFLPNTPTLVNAGRPLGQLSACFVLPINDSMDSIFDAVKATALIHKSGGGTGFSFSRLR 126

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F+KV +    A+ QGG R+GA    L   H D+ +F+  +  
Sbjct: 127 PKNDIVSSTMGVSSGPVSFMKVFDCATEAIKQGGVRRGANMGILRVDHPDILDFIHCKDK 186

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G+      + N +  I + F+  +  +  + L +P                   N E  
Sbjct: 187 EGE----FSNFNISVAITNKFLDALKNDEEYELINP------------------RNKE-- 222

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587
                  V  K+ A  +W ++     ++G P I F D  N + P  + VG + S+N C E
Sbjct: 223 -------VVGKLKASFVWDEIAKSAHKSGEPGIIFIDRINEKHPLSKEVGEIESTNPCGE 275

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             L         CNLGSINL         D+D L  T+ TAV  LDNVID+N + ++K +
Sbjct: 276 QPLLPFES----CNLGSINLGKFVKGKSIDWDNLKKTVFTAVHFLDNVIDVNIYPLKKIE 331

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           ++   +R +GLG+MGF   L  L IPY S EA+++A++ M FI   +  AS ELA++RG 
Sbjct: 332 ENTKKNRKVGLGVMGFADMLIDLGIPYDSKEAIKLAEDVMCFIQKISKEASSELAKKRGN 391

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + ++K S++ +                                   + I MRN+    IA
Sbjct: 392 FPNYKYSIYSK-----------------------------------ENIPMRNATTTTIA 416

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   S  I+P +   Y K  + G     V   L N LK R ++ E +   +  
Sbjct: 417 PTGSISMIADASSGIEPIFALAYYKQVLDGKRLPYVYERLFNVLKDRGIYTEKLAERIID 476

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           + GS+  IE IP+D++K+  TA +I     I+  +  QK+ D A S  + +   S   +D
Sbjct: 477 NRGSLKGIEEIPEDIRKLFVTAMDITYKAHIDIQAAFQKYTDNAVSKTINMPN-SATVVD 535

Query: 887 F--IYRQAWLMGLKTTYYLRSRS 907
               Y  A+  GLK     R  S
Sbjct: 536 VKEAYNYAYKNGLKGITVYRDGS 558


>gi|326784149|ref|YP_004324542.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004881|gb|ADO99272.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 774

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 197/684 (28%), Positives = 314/684 (45%), Gaps = 41/684 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG++   N +++  +VEEAC GL  VS+  V   +    YDG+S  +++  LI S+  LI
Sbjct: 13  DGSIEPLNLEKMHKMVEEACEGLSGVSASQVEMNSGIQFYDGISTDNIQEILIRSASDLI 72

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             + PNY  V +R L+  LR++V      +    T +++          Y EE      L
Sbjct: 73  SLDNPNYQYVASRLLMFSLRKQVFNKSVWQDGMPTPYDVALYNVTVNKVYDEE------L 126

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327
            +   D D   L N + + RD+ F Y GL+ + D+Y +    S    E PQ  ++ +AM 
Sbjct: 127 LDKYSDEDWAKLNNYIDHGRDYLFSYAGLRQVVDKYLVQDRSSNEVFETPQYMYLFIAMT 186

Query: 328 L--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGI 383
           L      T++      +YN +S       TP +  +G R P  Q +SC L    D L  I
Sbjct: 187 LFADYPATQRLDYVRRYYNAISKHKINIPTPIM--AGVRTPLRQFASCVLIDSDDTLDSI 244

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F +            G+G +   +RG+ + I G      GV+PFLK    T     Q G 
Sbjct: 245 FSSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVAHTGVVPFLKKFESTVRCCTQNGI 304

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R  +N   TLFS
Sbjct: 305 RGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIKNEDITLFS 364

Query: 504 PDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561
           P +V  L+D +G + F+  Y +YE      +  + RK I A  L+  +L    ETG  +I
Sbjct: 365 PHDVPGLYDDFGTDAFDARYVDYE-----SDQSIPRKTIGAQELFLSLLKERAETGRLYI 419

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANN 614
              D CN  S  +    V+ SNLC EITL +          E A+C L ++N +    N 
Sbjct: 420 MNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAVN-VGKLKN- 475

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
               D +      AVR L+ +ID   + +  A+KS    R++G+G +G    L      Y
Sbjct: 476 ---LDDMEELCDLAVRGLEELIDYQNYPVNAAEKSTKNRRSLGVGFIGLAHYLARNGEHY 532

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
             P A ++  +  E   ++ + +S ELA+E+GA   +  + +  G+ PID+     EV D
Sbjct: 533 DDPGAWKLVHKLAESFQYYLLKSSNELAKEKGACGYYHRTKYSDGILPIDTYK--REV-D 589

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           E+     S   WD L+  +K  G+R+S   A  P+ + + +   +  I+P    L +K +
Sbjct: 590 EICQVELSH-DWDSLRADIKEFGLRHSTLSAQMPSESSSVVSNETNGIEPPRAYLSIKKS 648

Query: 795 MSGDF-TVVNSFLVNELKQRDLWD 817
             G    VV  F   +     LW+
Sbjct: 649 KKGPLKQVVPQFTTLKNNYTLLWE 672


>gi|147668970|ref|YP_001213788.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. BAV1]
 gi|146269918|gb|ABQ16910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 866

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 183/646 (28%), Positives = 290/646 (44%), Gaps = 85/646 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352
           +L  RY      G   E  +  F RVA  +A+ E       +   R  EF+NL++   F+
Sbjct: 134 VLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFL 193

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R    
Sbjct: 194 PNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 253

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+  +   G  
Sbjct: 254 RVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG-- 311

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  I D FM+ V     + L +P      H+                   G
Sbjct: 312 --VLTNFNLSVAITDKFMQAVKDGVDYDLLNP------HN-------------------G 344

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E  V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N C E  L  
Sbjct: 345 E--VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLP 402

Query: 593 SSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  CNLGSINL          N  DY KL+  I++AVR LDNVID+N   + + ++
Sbjct: 403 YES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIEE 458

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S ELA ERG +
Sbjct: 459 MTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVF 518

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +++GS++++   P                                   MRN++C  IAP
Sbjct: 519 PAYRGSIYEKSGRP-----------------------------------MRNASCTTIAP 543

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + ++ + G   + VN +     K+   + E +I  L   
Sbjct: 544 TGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA-- 601

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886
           +G+  +   +P D K +  TA +I P W +   +  QK  D A S  +     +G+  + 
Sbjct: 602 EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVA 661

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            +Y+ A    LK     R  S      ST K  +         +PN
Sbjct: 662 EVYKMAHASNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707


>gi|251790601|ref|YP_003005322.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247539222|gb|ACT07843.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 762

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 216/793 (27%), Positives = 347/793 (43%), Gaps = 93/793 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K  +H           + +E  
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLYNH---------VVKMVEMA 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFNNQDEFERLYVKYEQDDSIRK----QQIKAAELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  + ++LA+    AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--ISSLHELEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y++  A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSNGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           S       RD   ++     P    W+ L+K ++T G+RNS   A+ P+ T + I   + 
Sbjct: 582 SYK-----RD---LDNICSEPLHHDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P   ++ VK++  G   ++   +      +D ++  ++ D+  +DG           
Sbjct: 634 GIEPPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG----------- 677

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAW 893
                           ++     QK+IDQA S N   D    PSGK    +L      A+
Sbjct: 678 ---------------YLQLVGLMQKFIDQAISANTNYDPARFPSGKVPMTQLLKDLLTAY 722

Query: 894 LMGLKTTYYLRSR 906
             GLKT YY  +R
Sbjct: 723 KFGLKTLYYQNTR 735


>gi|289432245|ref|YP_003462118.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288945965|gb|ADC73662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 866

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 183/646 (28%), Positives = 289/646 (44%), Gaps = 85/646 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352
           +L  RY      G   E  +  F RVA  +A+ E       +   R  EF+NL++   F+
Sbjct: 134 VLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFL 193

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R    
Sbjct: 194 PNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 253

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+  +   G  
Sbjct: 254 RVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG-- 311

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  I D FM+ V     + L +P      H+                   G
Sbjct: 312 --VLTNFNLSVAITDKFMQAVKDGVDYDLLNP------HN-------------------G 344

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E  V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N C E  L  
Sbjct: 345 E--VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLP 402

Query: 593 SSEETAVCNLGSINL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  CNLGSINL          N  DY KL+  I++AVR LDNVID+N   + +  +
Sbjct: 403 YES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIDE 458

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S ELA ERG +
Sbjct: 459 MTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVF 518

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +++GS++++   P                                   MRN++C  IAP
Sbjct: 519 PAYRGSIYEKSGRP-----------------------------------MRNASCTTIAP 543

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + ++ + G   + VN +     K+   + E +I  L   
Sbjct: 544 TGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA-- 601

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886
           +G+  +   +P D K +  TA +I P W +   +  QK  D A S  +     +G+  + 
Sbjct: 602 EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVA 661

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            +Y+ A    LK     R  S      ST K  +         +PN
Sbjct: 662 EVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707


>gi|260102936|ref|ZP_05753173.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|260083262|gb|EEW67382.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 722

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 185/654 (28%), Positives = 309/654 (47%), Gaps = 76/654 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  I+A   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 321 ITKE-YQNLLNNPRIKKTF--INARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL S + 
Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433

Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +V+ L+ V    D++C      KK N  +RAIGLG M     L   HI Y SPEAVE  
Sbjct: 434 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 491

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733
                 I++HA   S +LA++ GA+  FK S +          D+ V P      + E+ 
Sbjct: 492 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 549

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  + 
Sbjct: 550 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 609

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                   V ++ +N+                             D+ +     A+E+ P
Sbjct: 610 EADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 640

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 641 NAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 694


>gi|255065943|ref|ZP_05317798.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
 gi|255049854|gb|EET45318.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
          Length = 759

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 307/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +      +Y    IE+ 
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRK-IAYGEFEPPHLFDHVKKLTDAGKYDRHIIED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VAM L  K  ++ +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 176 ILVAMCLFSKYPQETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIECD 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 234 DSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGG 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++    
Sbjct: 354 NITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L + 
Sbjct: 410 GTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAF 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +  
Sbjct: 470 NLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAY 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+
Sbjct: 525 YLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDT 584

Query: 726 I--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 585 YKKDLDAVCSEPLLCD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|238021470|ref|ZP_04601896.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
 gi|237868450|gb|EEP69456.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
          Length = 757

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 213/806 (26%), Positives = 339/806 (42%), Gaps = 91/806 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DG L   N  ++  +V  A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 5   MQVTKRDGRLEPINLDKIHKVVTWAAEGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR+ +    Y  P    H +      +Y    +++ 
Sbjct: 65  SAADLISEETPDYQYLAARLAIFHLRK-IAYGEYAPPHLFAHVQKMVALGKYDAHLLQDY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
            +A              +   + +ERD  F Y  ++ +  +Y +    +R   E PQ  +
Sbjct: 124 TEAEYNE----------INGYIDHERDLTFSYAAVKQMEGKYLVQNRVTRQIFESPQFLY 173

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VAM L  K  +  +      FY+ +S F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIM--SGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 232 DSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+V+  L L+ N G +  R   ++    I  L   R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPLWHIEVQSLLVLKNNRGVEENRIRQLDYGVQINKLMYTRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552
             TLFSP E   L++ +     EFE  Y  YE           RK  ISA  L+  ++  
Sbjct: 352 NITLFSPHETPGLYEAFFADQDEFERLYTQYENDPS------IRKETISAADLFSMLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI L        N  + E A+C L 
Sbjct: 406 RAGTGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    N  +++ LA      VR LD ++D   + I  AKK+    R +G+G++ +
Sbjct: 466 AFNLGA--LENLDEFENLAD---LTVRALDALLDYQDYPIPAAKKATMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+++   + E + ++ + ASV LA+E GA   F  + + QG+ PI
Sbjct: 521 SYYLAKNGVKYSDGSAIDLTHRTFEAMQYYLLKASVNLAKEYGACPLFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTY----KADLDKFCNEPLHYDWEALRADIVKYGLRNSTLSALMPSETSSQIANATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K +  G    VV  F   + +   LW       +  +DG             
Sbjct: 637 PPRGLVTIKQSKDGILKQVVPEFERLKNQYETLW------QMGGNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWL 894
                         ++     QK+IDQA S N   D         P  + L  +   A+ 
Sbjct: 678 -------------YLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLL-SAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920
            G+KT YY  +R      +S L+  D
Sbjct: 724 YGVKTLYYHNTRDGADDRQSDLQDDD 749


>gi|319638205|ref|ZP_07992968.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
 gi|317400478|gb|EFV81136.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
          Length = 759

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 191/677 (28%), Positives = 305/677 (45%), Gaps = 49/677 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A  +K+   DG L   +  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   
Sbjct: 4   ATNIKVTKRDGRLEDIDLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHET 63

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI ++ P+Y  + AR  +  LR+        +P     H  +      + R+I
Sbjct: 64  IIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEF--EPPHLYDHVKKLTDAGKYDRHI 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
                  +   S  +FD   L   + + RD  F Y  ++ L  +Y +    +R   E PQ
Sbjct: 122 -------IADYSREEFD--ELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQ 172

Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
             ++ VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 173 FLYILVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVL 229

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +RGLG+ I G   +  G IPF K+   
Sbjct: 230 IECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQA 289

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+
Sbjct: 290 AVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRL 349

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++
Sbjct: 350 IKGGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLPATELFSTLM 405

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C 
Sbjct: 406 QERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCT 465

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A   NN  + ++LA      VR LD ++D   + +  A+ +    R +G+G++
Sbjct: 466 LSAFNLGA--LNNLDELEELAD---LTVRALDALLDYQDYPVAAARTATMNRRTLGIGVI 520

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  
Sbjct: 521 NYAYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKL 580

Query: 722 PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID+       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   + 
Sbjct: 581 PIDTYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATN 635

Query: 781 SIDPSYQNLYVKSNMSG 797
            I+P    + VK++  G
Sbjct: 636 GIEPPRGLVSVKASKDG 652


>gi|323126701|gb|ADX23998.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 728

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 206/763 (26%), Positives = 356/763 (46%), Gaps = 104/763 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KK   + H +   +  E   RY++E +   L+    ++  L YL  +  YE+     
Sbjct: 15  TRFKKTDGSYHFDSDAIAVE---RYLDEQISPNLMMFPSLEEKLAYLIKEGYYEQAIFDL 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF+Y   Q   D  FL++ G+ ++  Q++ ++   G    ET +++  +   
Sbjct: 72  YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127

Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                     +NL+       F  +TPT  N+G  R  +  SC+L  + D++  I  A+ 
Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA 
Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP    
Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK+  +I+  E Y +      IK    ISA  L++ +  + FE+G+P++ F D 
Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614
            N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A  
Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINI----AEA 419

Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             D    +  I T++R LD V    D++C  +IEK   +NH   A+GLG M     L   
Sbjct: 420 MTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  G +    +   A
Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536

Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           + + +    L  +   +LP    W  L + ++T G+ N++ +A+APT +I+ +   + S+
Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + V+   +     V ++ +N+             +  Y++              
Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+ +   + Y
Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           Y+R R    +  S     D +L++V   D N  T ++    SC
Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDSV---DKNGLTDTINECQSC 726


>gi|256849453|ref|ZP_05554885.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|262046122|ref|ZP_06019085.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713569|gb|EEU28558.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|260573452|gb|EEX30009.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 722

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 187/655 (28%), Positives = 307/655 (46%), Gaps = 78/655 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377

Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI  +N+ S                CNLGS+N+ A   +     DKL   + 
Sbjct: 378 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 433

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +V+ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732
                  I++HA   S +LA+  GA+  FK S +          D+ V P      + E+
Sbjct: 491 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 548

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +
Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ +N+                             D+ +     A+E+ 
Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           P  +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694


>gi|257454183|ref|ZP_05619453.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448356|gb|EEV23329.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 762

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 190/672 (28%), Positives = 303/672 (45%), Gaps = 53/672 (7%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG L   +  ++  ++E A  GL +VS   V   ++   YD ++   +   +I S+  LI
Sbjct: 13  DGRLEKIDLDKIHRVIEWAAEGLDNVSVSQVEISSHIQFYDKITTKSIHETIIKSAADLI 72

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG-VKARL 268
               P+Y  + AR  +  LR+ +    ++ P    H            +  +EG   A +
Sbjct: 73  SAATPDYQYLAARLAIFHLRK-IAFGQFEPPHLFDH----------VTKLTQEGRYDAHI 121

Query: 269 LHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVA 325
           L + S  +FD+  L + + + RD +F Y  ++ +  +Y +   +     E PQ  +M V 
Sbjct: 122 LQDFSKEEFDI--LNDYIDHNRDLSFAYAAVKQMEGKYLVQDRVTKQVFESPQFLYMLVG 179

Query: 326 MGLALKETEKEKRAVE------FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           M L     ++  +A        FY+  S+F     TP +  SG R P  Q SSC L    
Sbjct: 180 MCLFASYDKQYDKAARLDYIKRFYDTTSTFKISLPTPIM--SGVRTPSRQFSSCVLIECD 237

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 238 DSLDSINATTSAIVRYVSQRAGIGVNAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 297

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I     +R+ +N 
Sbjct: 298 CSQGGVRGGAATLFYPIWHLEVENLLVLKNNRGVEDNRVRHMDYGVQINKTIYQRLIKNQ 357

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  YE YE+     E    R + A  L+  M+    
Sbjct: 358 NVTLFSPSDVPGLYDAFFADQAEFERLYEQYEQD----ESIRKRSVPAQELFSLMMQERA 413

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    V  +  SNLC EI L        N  S E A+C L  I
Sbjct: 414 STGRIYVQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTQPLDNINDESGEIALCTLSGI 473

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     N   D  + A  I   VR LD ++D   + +  AK  +   R +G+G++ +  
Sbjct: 474 NLGE--INQLEDIKEPAELI---VRALDALLDYQDYPVIAAKNGSMKRRTLGIGVINYAY 528

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L      Y+ P A+ +   + E + ++ + AS +LA+E+GA  +F  + + QG+ PID+
Sbjct: 529 YLAKNGTKYSDPTALGLTHRTFEALQYYLLVASNKLAKEQGACPAFGDTTYSQGILPIDT 588

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
               A++  +   N   +L W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 589 YK--ADI--DAICNEPLQLDWESLRHDIKTHGLRNSTLTALMPSETSSQIANATNGIEPP 644

Query: 786 YQNLYVKSNMSG 797
              + VK++  G
Sbjct: 645 RGLVSVKASKDG 656


>gi|227114437|ref|ZP_03828093.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 761

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 214/793 (26%), Positives = 346/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I 
Sbjct: 5   LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSQEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD  A+ N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKAYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G   ++   +      +D ++  ++ D+  +DG              
Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L      A+  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|73748195|ref|YP_307434.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. CBDB1]
 gi|73659911|emb|CAI82518.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 761

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 180/634 (28%), Positives = 285/634 (44%), Gaps = 84/634 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           G   E  +  F RVA  +A+ E       +   R  EF+NL++   F+ ++PTL N+G  
Sbjct: 41  GKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRE 100

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R     +  T G + G 
Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F++  +     + QGG R+GA  A L   H D+ +F+  +   G       + N +  
Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFVHAKDKAG----VLTNFNLSVA 216

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM+ V     + L +P      H+                   GE  V   ++A  
Sbjct: 217 ITDKFMQAVKDGVDYDLLNP------HN-------------------GE--VVSSLNASE 249

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++ K++ M ++TG P I F D  N  +P   +G + S+N C E  L         CNLGS
Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305

Query: 605 INL----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           INL          N  DY KL+  I++AVR LDNVID+N   + +  +     R IGLG+
Sbjct: 306 INLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVNKFPLPQIDEMTKKSRKIGLGV 365

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF   L  L +PY S  ++++A+E M F++  A   S ELA ERG + +++GS++++  
Sbjct: 366 MGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSG 425

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            P                                   MRN++C  IAPT T++ I G S 
Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450

Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P +   + ++ + G   + VN +     K+   + E +I  L   +G+  +   +P 
Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEVDVPQ 508

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLK 898
           D K +  TA +I P W +   +  QK  D A S  +     +G+  +  +Y+ A    LK
Sbjct: 509 DAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHARNLK 568

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
                R  S      ST K  +         +PN
Sbjct: 569 GITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 602


>gi|157144814|ref|YP_001452133.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157082019|gb|ABV11697.1| hypothetical protein CKO_00541 [Citrobacter koseri ATCC BAA-895]
          Length = 761

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 216/794 (27%), Positives = 347/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------EFEPPALY-DHVVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDAQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG
Sbjct: 517 VINYAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEALHYNWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P   ++ +K++  G   V+   + +    +D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGHVSIKASKDG---VLRQVVPDYEGLKDRYE--LLWEMPSNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQA S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQAISANTNYDPTRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYHNTR 735


>gi|271499643|ref|YP_003332668.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech586]
 gi|270343198|gb|ACZ75963.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech586]
          Length = 762

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 216/791 (27%), Positives = 343/791 (43%), Gaps = 89/791 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E   + +  ++   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDRHLLEDYTEEEFAHMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSSYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YER     +    +++ A  L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFNNQDEFERLYVKYERDDSIRK----KQLKAAELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  + ++LA     AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--ISSLHELEELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS +LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHQTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           S       RD +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 SYK-----RDLDNICSEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    VV  +   +     LW      D+  +DG             
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKNAYELLW------DMPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                         ++     QK++DQA S N   D    PSGK    +L      A+  
Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSR 906
           GLKT YY  +R
Sbjct: 725 GLKTLYYQNTR 735


>gi|328954504|ref|YP_004371838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454828|gb|AEB10657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
          Length = 738

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 291/619 (47%), Gaps = 78/619 (12%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFH 350
           + +L  RY    + G   E P   F+RVA  +A        E + E+    FY+L++S  
Sbjct: 21  VTVLKKRYLKKDDHGDVCEQPVDMFLRVAKTIAEVDRCYDPEADIEETTRCFYHLMASRS 80

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           FM ++PTL N+G    QLS+CF+  V DD+  IF A++  A++ K  GG G  ++ +R  
Sbjct: 81  FMPNSPTLMNAGRELGQLSACFVLPVDDDISSIFDAIKNTALIHKSGGGTGFSFSRIRPE 140

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G + G I F+ + +     + QGG R+GA  A L   H D+E+F+  +  T 
Sbjct: 141 NDRVLSTKGVASGPISFMNIFDVATETIKQGGTRRGANMAILRVDHPDIEKFITCKNQT- 199

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               +  + N +  + D FM+ V     + L +P                          
Sbjct: 200 ---DKLTNFNISVAVTDAFMQAVINGEDFALLNP-------------------------- 230

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V R + A  L+  ++   + TG P + F D  N  +P  HVG++ S+N C E  L
Sbjct: 231 RTQQPV-RSVKAAVLFDLIVQSAWSTGEPGLIFLDQVNRGNPIPHVGLIESTNPCGEQPL 289

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL     N   ++  L   +  +V  LDNVID N   + + +++ 
Sbjct: 290 LPYES----CNLGSINLAQMVKNGAVNFATLKEVVWASVHFLDNVIDANRFPLPQIEEAT 345

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MGF   L  L I Y S  AV++A+E M FI   + +AS ELA++RG + +
Sbjct: 346 MKNRKIGLGVMGFADMLLYLGISYNSEAAVKVAEEVMSFIQRESKAASAELAEKRGNFPN 405

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS++D G                   N   R              MRN+    IAPT 
Sbjct: 406 FPGSIYDTG-------------------NGKGR--------------MRNATTTTIAPTG 432

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I G S  I+P +   +V+  + G +   V+ +  +  ++R  ++  ++  +    G
Sbjct: 433 TISIIAGCSSGIEPLFGISFVRRVLDGAELLEVHPYFEDVARRRGFYNGELMRQIA-QTG 491

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
           SI +++ IP D++++  TA +I P W +   +  QK+ D A S  + +    S + +  +
Sbjct: 492 SIRDLKEIPKDIRRLFVTAHDITPQWHVRIQAAFQKYTDNAVSKTVNFPASASPEDVRQV 551

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y  A+ +GLK     R RS
Sbjct: 552 YLLAYELGLKGITIYRDRS 570


>gi|167623962|ref|YP_001674256.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           halifaxensis HAW-EB4]
 gi|167353984|gb|ABZ76597.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 762

 Score =  243 bits (621), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 212/777 (27%), Positives = 345/777 (44%), Gaps = 85/777 (10%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++E A  GL +VS   V   ++   +DG++   +   +I ++  LI  E P+Y  +
Sbjct: 21  KIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIKAAADLISPEAPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +AR  +  LR++       +P K   H           + +E+G     + E     +L 
Sbjct: 81  SARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVEQGKYDAHILEDYSQEELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335
            L   + + RD  F Y  ++ L  +Y +   ++    E  Q  ++ VA  L  K  +  +
Sbjct: 130 ILDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLYILVAACLFAKYPKETR 189

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393
            K   +FY+  S F     TP +  +G R P  Q SSC L    D L  I          
Sbjct: 190 LKYVKDFYDATSLFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVKY 247

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +  
Sbjct: 248 VSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFYP 307

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH++VE  L L+ N G D  R   ++    I  +  +R+ Q    +LFSP +V  ++D 
Sbjct: 308 MWHLEVESLLVLKNNRGVDDNRVRHLDYGVQINKVMYQRLIQGGMISLFSPSDVPGMYDA 367

Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +    +EFE  Y  YE  AD    K  ++I AV L+  M+     TG  +I   D CN  
Sbjct: 368 FFEDQQEFERLYLKYE--ADDSIRK--KQIKAVELFSLMMQERASTGRIYIQNVDHCNTH 423

Query: 571 SP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           SP    V  V  SNLC EI L        N    E A+C L ++NL A         D+L
Sbjct: 424 SPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA-----IKKLDEL 478

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                 AVR LDN++D   + I  AKK++   R +G+G++ F + L    + Y+   A  
Sbjct: 479 EPLADLAVRALDNLLDYQDYPIISAKKASMNRRTLGIGVINFANYLAKEGVRYSDGSANG 538

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMNR 740
           I  ++ E I F+ + AS++LAQE+GA  +F  + + +G+ PID+    L ++ DE     
Sbjct: 539 ITHKTFEAIQFYLLKASMKLAQEQGACPAFHETTYAKGILPIDTYKRDLDKICDE----- 593

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + VK++  G   
Sbjct: 594 PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG--- 650

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                   +LKQ       ++ D + +  S   + ++P++   +                
Sbjct: 651 --------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYLQLVGL----------- 684

Query: 861 SRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLKTTYYLRSRSATS 910
              QK++DQ+ S N   D    E     +  + +    A+  G+KT YY  +R   S
Sbjct: 685 --MQKFVDQSISANTNYDPTRFEGGRVPMKVLLKDLLTAYKYGVKTLYYHNTRDGAS 739


>gi|242238483|ref|YP_002986664.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech703]
 gi|242130540|gb|ACS84842.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech703]
          Length = 762

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 217/792 (27%), Positives = 340/792 (42%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++               E   LY ++    ++ G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAFG----------QFEPPTLY-DHVVNMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDRHLLEDYSQEEFTLMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE Q D    K   ++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFTDQDEFERLYVQYE-QDDSIRKK---QLKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       D  +L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA-----ISDLSELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ P+D
Sbjct: 522 YYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAQEQGACPWFGETTYAQGILPVD 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDSVCNEALHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G   ++   +      +D ++  ++ D+  +DG              
Sbjct: 637 PPRGHISIKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK+IDQA S N   D    PSG    K+L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSA 908
           LKT YY  +R  
Sbjct: 726 LKTLYYQNTRDG 737


>gi|237808190|ref|YP_002892630.1| ribonucleotide-diphosphate reductase subunit alpha [Tolumonas
           auensis DSM 9187]
 gi|237500451|gb|ACQ93044.1| ribonucleoside-diphosphate reductase, alpha subunit [Tolumonas
           auensis DSM 9187]
          Length = 758

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 199/674 (29%), Positives = 297/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   D    + +  ++  +V  A  GLQ VS   V    +   YDG+  SD+   LI 
Sbjct: 5   LMVTKRDNHTEALDLDKIHRVVTWAAEGLQGVSVSQVELSAHIQFYDGIRTSDIHETLIK 64

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E+ P+Y  + AR  +  LR++     +  P      + Q          +E G
Sbjct: 65  SAADLISEQAPDYQYMAARLAMFHLRKKAYGG-FTPPSLFEQVKTQ----------VEAG 113

Query: 264 -VKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
               +LL + S  +FDL  L   L +ERD  F Y  ++ L  +Y L   + G   E PQ 
Sbjct: 114 RYDQQLLTDYSKEEFDL--LDGYLAHERDMHFAYAAVKQLEGKYLLQNRVTGEIYESPQF 171

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            +M VA  L      T +      FY+ +S+F     TP +  SG R P  Q SSC L  
Sbjct: 172 LYMLVAACLFANYPRTTRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEENRVRHMDYGVQINRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D +     EFE  Y  YE+     +    R++ AV L+  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFADQAEFERLYLQYEKDPAIRK----RQMKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         + E A+C L 
Sbjct: 406 RAGTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLDHYLDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK      R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDELEPLAELAVRALDALLDYQDYPIPAAKNGAMWRRPLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + ASV+LA+E GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVKLAKEFGACPRFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+        D+L       L WD L+  ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKRDLDDLC-QEPLLLDWDSLRHEIRQHGLRNSTLTALMPSETSSQIANATNGIE 636

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 637 PPRGLISVKASKDG 650


>gi|311278799|ref|YP_003941030.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747994|gb|ADO47746.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 761

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 218/794 (27%), Positives = 338/794 (42%), Gaps = 89/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDTSIRQ----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAISG-----LDELEDLAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIMPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      WD L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAVVNEPLHYDWDGLREAIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    VV  +   +     LW      ++  +DG             
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                         ++     QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 725 GVKTLYYHNTRDGA 738


>gi|325130343|gb|EGC53109.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis OX99.30304]
 gi|325136203|gb|EGC58811.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M0579]
 gi|325208253|gb|ADZ03705.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 759

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 195/695 (28%), Positives = 310/695 (44%), Gaps = 52/695 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
           +P    + VK++  G    VV  F   +     LW
Sbjct: 638 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 672


>gi|167039475|ref|YP_001662460.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter sp. X514]
 gi|300915422|ref|ZP_07132735.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307725199|ref|YP_003904950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
 gi|166853715|gb|ABY92124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X514]
 gi|300888482|gb|EFK83631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307582260|gb|ADN55659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
          Length = 770

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 186/625 (29%), Positives = 288/625 (46%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A       K  + E     FY+++ +  F
Sbjct: 9   KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL       +     DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M   +   VN        +R  + E ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  + + +E + + +
Sbjct: 479 R-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562


>gi|48478313|ref|YP_024019.1| ribonucleotide-diphosphate reductase subunit alpha [Picrophilus
           torridus DSM 9790]
 gi|48430961|gb|AAT43826.1| ribonucleoside-diphosphate reductase alpha chain [Picrophilus
           torridus DSM 9790]
          Length = 773

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 168/571 (29%), Positives = 277/571 (48%), Gaps = 73/571 (12%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +F +++S+  F+ ++PTL N+G    QLS+CF+  V D +  IF AL+  A + K  GG 
Sbjct: 224 KFEDVMSNLKFVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFDALKYTAEIHKSGGGT 283

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T G + G + F+++ + T   + QGGKR+GA    L   H D+ 
Sbjct: 284 GFSFSRLRAKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRRGANMGILRYDHPDIM 343

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+  + +   + +   + N +  + D F +++  +    L +P +              
Sbjct: 344 DFITSKDS---ENKVLSNFNISVAVEDEFFEKLDNDDYIELKNPRDG------------- 387

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV  +I A  +W  ++   ++TG P + F D  N ++P +++G + 
Sbjct: 388 --------------KVVNRIKASTIWNTIINQAWKTGDPGMIFLDEINKKNPVKNIGYIE 433

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C E  L         CNLGSINL     + +FD+D    TI  A R LDNV+D N 
Sbjct: 434 STNPCGEQPLMPYES----CNLGSINLSKFVVDGKFDFDAYKETIDIATRFLDNVVDANK 489

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             ++K K+     R IGLGLMGF   L +L IPY S EA+EI +  M+F++  +   S  
Sbjct: 490 FPVDKIKEMTRKTRKIGLGLMGFADMLIMLGIPYNSNEALEIGERIMKFLNDESHLESQR 549

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG +  + GS W++                                   + I MRN
Sbjct: 550 LAEERGVFPGWYGSDWEK-----------------------------------QNIKMRN 574

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           S    IAPT TI+ I G S SI+P +   +V+  ++G +   +N    NEL++R+L+ + 
Sbjct: 575 STTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELIEINPLFENELRKRNLYSDD 634

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
           ++  +    G++ +I+ +PDD+K++  TA EIDP W +   +  Q++ D   S  + L  
Sbjct: 635 LMEKVA-RTGNLRDID-LPDDIKRVFVTAQEIDPDWHVLMQATFQRYCDSGVSKTINLPY 692

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E +   +   YR A  +  K     R RS T
Sbjct: 693 EATPDDIARSYRLAKDLHCKGITVYRDRSKT 723



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 15/104 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+      + +       LT+  +  LL+ ++  
Sbjct: 8   VIKRDGSRVPFDKEKITMAIYKAMLSVKFGSMEDASK-------LTDAVIDELLKSDEEP 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHK-----ITREYVLYREERSDVR 129
               +E IQD VE  LM    +      + + Y++YRE+R  +R
Sbjct: 61  T---VERIQDTVEKVLMTKKINNRDFTAVAKSYIIYREKRKTIR 101


>gi|312984311|ref|ZP_07791654.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|312984330|ref|ZP_07791673.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894276|gb|EFQ43355.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894295|gb|EFQ43374.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
          Length = 727

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 187/655 (28%), Positives = 311/655 (47%), Gaps = 78/655 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 90  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQILQF 268

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 326 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL   + 
Sbjct: 383 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVS 438

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +V+ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 439 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 495

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732
                  I++HA   S +LA++ GA+  FK S +          D+ V P      + E+
Sbjct: 496 TGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEI 553

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +
Sbjct: 554 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 613

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ +N+                             D+ +     A+E+ 
Sbjct: 614 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 644

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           P  +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 645 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 699


>gi|254672041|emb|CBA04616.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha275]
          Length = 759

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +      +Y    +E+ 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVKKLTDAAKYDRHILED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + +ERD +F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 583

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 584 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + VK++  G
Sbjct: 638 EPPRGLVTVKASKDG 652


>gi|261377766|ref|ZP_05982339.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146055|gb|EEZ72473.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
          Length = 759

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 193/674 (28%), Positives = 306/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAADGLKNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+ +    ++ P    H +      +Y    IE+ 
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRK-IAYGDFEPPHLYDHVKKLTDSGKYDRHIIED- 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
                   S  +FD   L   + + RD AF Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 125 -------YSREEFD--ELNAYIDHGRDMAFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 176 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 233 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 293 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 353 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 409 AGTGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 468

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 469 FNLGA--LNN---LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 523

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID
Sbjct: 524 YYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPID 583

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 584 TYK-----KDLDAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK++  G
Sbjct: 639 PPRGLVTVKASKDG 652


>gi|307266246|ref|ZP_07547787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918696|gb|EFN48929.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/625 (29%), Positives = 288/625 (46%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A       K  + E     FY+++ +  F
Sbjct: 9   KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL       +     DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M   +   VN        +R  + E ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + +E + + +
Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562


>gi|225847949|ref|YP_002728112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643612|gb|ACN98662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 846

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/587 (27%), Positives = 283/587 (48%), Gaps = 57/587 (9%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           EK   E+YNL+ S  FM +TP L N G       +CF+  + D L  I   L+  A++ +
Sbjct: 232 EKEVDEYYNLMVSRKFMPNTPALVNFGNPLGMGMACFVLGMEDSLLSIMETLKNAAIIFQ 291

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G +++ +R  G  +  T+G S G I F+ + +     + QGG R+GA    L + 
Sbjct: 292 SGGGCGYNFSTLRPEGDFVRSTHGVSSGPIAFMTLFDKMTDVIKQGGVRRGANMGILNSD 351

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+E+F+  +K       +  + N + ++ + F +   +N  + L +P           
Sbjct: 352 HPDIEKFVVAKKGN----LQLTNFNISVFLKEDFWEYYKENKPYPLINP----------- 396

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQ 574
                          R + ++ + I+    +  ++   +E+  P + F D  N  +P  +
Sbjct: 397 ---------------RNK-QIVKYINPKNFFDLIVYQGWESAEPGLLFDDNINRYNPFLK 440

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK---------LASTI 625
            +G + S+N C E+ L  +      C+LGSINL A F   ++D +K         L  T+
Sbjct: 441 ALGKIESTNPCGEVLLYPNES----CDLGSINLWA-FVEEEYDGEKRVVKINWEDLEKTV 495

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R AVR LDN++DIN + ++K ++     R IGLG+MG    L  L +PY S E ++  + 
Sbjct: 496 RLAVRFLDNILDINKYPLKKIEERTLKTRKIGLGVMGLADTLFELELPYDSKEGLDFMER 555

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            MEFI++++   S+E+A++RG++  F  S +  G  P                  +    
Sbjct: 556 IMEFINYYSKLESIEIAKKRGSFPYFNKSFYKNGNLPFRG----------FYEKESWHFD 605

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+++ + +K  G+RN+    IAPT +I+ I G S  I+P Y  +Y K    G F  VN  
Sbjct: 606 WEKVSQDIKNHGLRNAYTTVIAPTGSISMIAGCSAGIEPVYSLVYEKKVTIGSFYYVNPV 665

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
               +++  L+D+ +I D+  ++GSI NI  IP   K +  TA +I     +++ +  QK
Sbjct: 666 FEKFMEREGLFDDNLIKDVVRNNGSIKNIPYIPQRYKNVFKTAKDISGKDHVKALASIQK 725

Query: 866 WIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           W+D + S  + + ++ S +++   Y  A  +G K     R +S   V
Sbjct: 726 WVDSSVSKTINFPEDVSIEEMKETYLLAHELGCKGLTVYREKSIAGV 772



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 7/103 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD SKI+ AI KA  AV  K  S S       ++L ++ V +L     S
Sbjct: 4   KIIKRDGRVVDFDISKIANAIWKAMQAVGEKDKSLS-------ESLAKKVVEKLESKLSS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +E +QD VE +L+++G  K+ + Y+LYRE+R+ +R  +
Sbjct: 57  NQIPTVEQVQDIVEETLIEAGLSKVAKAYILYREKRAQIRKEK 99


>gi|307129980|ref|YP_003881996.1| Ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Dickeya dadantii 3937]
 gi|306527509|gb|ADM97439.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Dickeya dadantii 3937]
          Length = 762

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 217/790 (27%), Positives = 346/790 (43%), Gaps = 87/790 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H +         + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQF--EPPKLHDHVI---------KMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE Q D    K   ++ A  L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFTNQDEFERLYVKYE-QDDSIRKK---QLKAAELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  + ++LA+    AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--ISSLHELEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           S       RD +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 SYK-----RDLDSICSEPLHYDWEALRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G   ++   +      +D ++  ++ D+  +DG              
Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWDMPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPARFPSGKVPMTQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSR 906
           LKT YY  +R
Sbjct: 726 LKTLYYQNTR 735


>gi|269839439|ref|YP_003324131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269791169|gb|ACZ43309.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 598

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/577 (28%), Positives = 267/577 (46%), Gaps = 79/577 (13%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  FY  ++   F+ ++PTL N+GT   Q  +CF+  V D L GIF  L+  A++ +  G
Sbjct: 59  AERFYQAMAHLEFLPNSPTLMNAGTPSSQCMACFVLPVEDSLEGIFDTLKLAALIQQTGG 118

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R  G  +H T G S G + F+ + N     + QG KR+GA    L   H D
Sbjct: 119 GTGFSFSRLRPRGDVVHSTGGISSGAVSFMMLYNAMTETIKQGSKRRGANMGILRVDHPD 178

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EF+  ++    DRR  ++ N +  + D FM+ + +   + L +P + S          
Sbjct: 179 VREFVTSKR----DRRALNNFNISVGVTDEFMRAIEKGEKYPLVNPRDRS---------- 224

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                            V+    A  +W  ++   +++G P +   D  N ++P +H+G 
Sbjct: 225 -----------------VWEHEDARRIWELIIQEAWDSGEPGLVALDTINRQNPTKHLGE 267

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDN 634
           + ++N C E  L+        C LGSINL A         Q D+ KL   +   V  LDN
Sbjct: 268 IEATNPCAEEPLHPYE----ACCLGSINLNAVVTGPPEQRQLDWHKLGELVDLGVHFLDN 323

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDIN +   + +     +R IGLG+MG+   L  L +PY S EA+ +A+E M F+   A
Sbjct: 324 VIDINHYPDPRIEDICRRNRRIGLGVMGWADLLFQLGVPYDSEEALSLAEELMGFVEDRA 383

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + ASV+LA+ RG + ++ GS +D+   P                                
Sbjct: 384 VEASVKLAERRGVFPNYPGSDYDRRGGP-------------------------------- 411

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQ 812
              MRN+    IAPT TI  I   S  I+P +   Y +  + G      ++   + E ++
Sbjct: 412 --RMRNATTRTIAPTGTIGIIANCSAGIEPLFALTYTRRALGGRELKQEIHPVFLEEARR 469

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R + D+ +   +    G + N+  +P+DL+++ ATA EI P W +   +  Q+ +D   S
Sbjct: 470 RGVLDDHLREHV-VATGRVRNLPTLPEDLRRVFATALEISPEWHVRMQATFQRHVDNGVS 528

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
             + L  E + + ++  YR A+ +G K  T Y   SR
Sbjct: 529 KTINLPQEATPEDVESAYRLAYELGCKGITVYRYGSR 565


>gi|323467362|gb|ADX71049.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus H10]
          Length = 727

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 185/654 (28%), Positives = 308/654 (47%), Gaps = 76/654 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 90  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 268

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 326 ITKE-YQNLLNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL   + 
Sbjct: 383 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVS 438

Query: 627 TAVRVLDNVI---DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +V+ L+ V    D++C      KK N  +RAIGLG M     L   HI Y SPEAVE  
Sbjct: 439 DSVQALNRVARSSDLDCAP--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFT 496

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVR 733
                 I++HA   S +LA++ GA+  FK S +          D+ V P      + E+ 
Sbjct: 497 GIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIV 554

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  + 
Sbjct: 555 AKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRK 614

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                   V ++ +N+                             D+ +     A+E+ P
Sbjct: 615 EADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVGP 645

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 646 NAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 699


>gi|113200700|ref|YP_717863.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
 gi|76574599|gb|ABA47164.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
          Length = 767

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 191/689 (27%), Positives = 312/689 (45%), Gaps = 42/689 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   GT  + +  ++  +VE AC GL  VS   V        +DG+   D++  LI 
Sbjct: 7   INVIKRSGTAETLDLDKIHTMVEHACKGLAGVSESQVEMNANLQFFDGVETKDIQEILIR 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V AR LL  LR+ V            H +      E+  + IE G
Sbjct: 67  SANDLISLEAPNYQFVAARLLLFGLRKAVYNG---------HPDGHPPLKEHVEKCIERG 117

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           V  + +     D +   L + + ++RD+ F Y G++ + D+Y +     G   E PQ  +
Sbjct: 118 VYDKTILSKYTDEEWDKLNSFMDHDRDYLFTYAGIRQVVDKYLVQDRSTGEIYETPQFMY 177

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M +A  L   +    + +   ++YN +S       TP +    T   Q +SC L  V D 
Sbjct: 178 MMIAATLFQDDDPFYRIEYVKKYYNAISKHRLNIPTPVMAGVRTTLRQFASCVLVDVDDT 237

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I        GV+PFLK    T     
Sbjct: 238 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRDGEVVHTGVVPFLKKFESTVRCCT 297

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F +R   N   
Sbjct: 298 QNGIRGGSATVHFPIWHTEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIANKDI 357

Query: 500 TLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L+D +G  EF+  Y  YE+ +   +    ++I+A  L   +L    ETG 
Sbjct: 358 SLFSPHDVPGLYDAFGTPEFDDLYTQYEQDSSIPK----KRINAQELILDLLKERAETGR 413

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHF 611
            +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+    
Sbjct: 414 LYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINV---- 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D++      AVR LD++ID   + I+ A+ S    R++G+G +G    L    
Sbjct: 468 -GKLKSLDEIDELCELAVRGLDSLIDYQGYPIKAAEISTLNRRSLGIGFIGLAHYLAKHG 526

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y SP+A ++  +  E   +  + AS  +A E+G    F  + +  G+ PID+     E
Sbjct: 527 AKYNSPKAYKLVHDLTERFQYALLIASNRMAMEKGPCGYFDKTKYSDGILPIDTYK--KE 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           + D++  N  S   W+ L++R+K  G+R+S   A  P+ + + +   +  I+P    L +
Sbjct: 585 I-DDIVSNDLS-CDWEFLRERIKQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSI 642

Query: 792 KSNMSGDF-TVVNSFLVNELKQRD--LWD 817
           K +  G    +V  F  N LK     LWD
Sbjct: 643 KKSKKGPLKQIVPQF--NSLKANYDLLWD 669


>gi|50913720|ref|YP_059692.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50902794|gb|AAT86509.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 726

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 213/778 (27%), Positives = 355/778 (45%), Gaps = 127/778 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+   F+
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAI-FD 70

Query: 295 YLGLQILYDRY---------FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---- 341
                ++ D +         FL++ G+ ++  Q++ ++   G    ET  E RAV     
Sbjct: 71  AYPNDLIKDAFHYAYQQGYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNALF 128

Query: 342 --------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
                    ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 129 LADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP    D
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YD 305

Query: 510 LHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           +   YGK+  +I+  E Y++      IK    ISA  L++ +  + FE+G+P++ F D  
Sbjct: 306 IKCAYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTV 364

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQ 615
           N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A   
Sbjct: 365 NKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA--- 421

Query: 616 FDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            D       I T++R LD    V D+NC  ++E    +NH   A+GLG+M     L   H
Sbjct: 422 -DAPHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANH---AVGLGVMNLHGFLATNH 477

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y + EAV+  D     +++HA  AS +LA+E+GA++ F  S +  G +        A+
Sbjct: 478 IYYDTKEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTY-------FAK 530

Query: 732 VRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ + 
Sbjct: 531 YLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLS 590

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P    + V+   S     V ++ +++            ++  Y+       ER
Sbjct: 591 SCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYY-------ER 631

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                      A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+  
Sbjct: 632 ----------GAYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQ 681

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              + YY+R R      +  L G +       VT P +S  +          TEC+ C
Sbjct: 682 NCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724


>gi|300717618|ref|YP_003742421.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
 gi|299063454|emb|CAX60574.1| Ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
          Length = 761

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 212/792 (26%), Positives = 348/792 (43%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETVIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI ++ P+Y  + AR  +  LR++     ++ P+         LY +   R ++ G
Sbjct: 65  SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VKRMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRDTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE +    +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYENEPSIRK----QRVKAVDLFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLLDVNDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A   N+  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ +  
Sbjct: 468 NLGA--INSLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I F+ + AS ELA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQFYLLKASNELAKEQGACPWFNETTYAQGIMPIDT 582

Query: 726 IGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D  A++     L WD L++++KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDAISSEPLHLDWDGLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ +K++  G   ++   +    + +D ++  ++ D+  +DG               
Sbjct: 638 PRGHISIKASKDG---ILRQVVPEYERLKDSYE--LLWDMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLMGL 897
                       ++     QK+IDQA S N   D           +Q       A+  G+
Sbjct: 678 -----------YLQLVGLMQKFIDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|319942043|ref|ZP_08016362.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804427|gb|EFW01305.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 591

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 204/665 (30%), Positives = 303/665 (45%), Gaps = 98/665 (14%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A  + +ERD  F+ LGL  L + Y      S    PQ  F  VA           + A 
Sbjct: 1   MAVQMNFERDKLFDELGLMRLRESYMRSSEKS----PQERFAFVAETFG----SNPEHAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCFLT + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASRHWLSFSTPILSFGRSKKGLPISCFLTYMEDSAEGLVDTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G        +   I   + KS GV+P LKV +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 G--------IHVRIRSADEKSVGVMPHLKVYDAACLAYRQGSTRRGSYAAFLDIDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+++RK TGD   +  +++    + D FM+++            E S     Y   +E+
Sbjct: 165 PFIEMRKPTGDQNMKALNLHHGVNLSDAFMEKI------------EASMRDSSYDDTWEL 212

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
            + +          +V  K+SA  LW+++L M   TG P++ F D  N   P   +  G+
Sbjct: 213 RHPSTH--------EVVAKVSARDLWQRILEMRMHTGEPYLVFIDTANRALPSWLKDKGL 264

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNV 635
            +H SNLCTEI L +S + TAVC L S+NL     + NNQ         I  A+ +LDNV
Sbjct: 265 SIHGSNLCTEIFLPTSHDRTAVCCLSSLNLEYFDEWKNNQ-------QFITDAMELLDNV 317

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     I +A+ S    R++GLG +GF + L    +P+ S  A  I  +    I 
Sbjct: 318 LQYFIDHAPDQIARARYSAMRERSVGLGALGFHAYLQKKGVPFESAAAKSINKQVFRMIR 377

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                A  +L  ERGA         D GV                               
Sbjct: 378 TACAEADKKLCAERGACPDAA----DSGV------------------------------- 402

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S+ M++AP A+ + I  G S SI+P   N+Y +  +SG + + N FL  +L
Sbjct: 403 -----SRRFSHWMSVAPNASSSLIMGGTSPSIEPYRANIYRQDTISGAYIMKNRFLKAKL 457

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  L  E + +DL  HDGSI + + IP D+K +  TA EID  W++E A+ RQ++IDQ 
Sbjct: 458 AELGLDTEEVWADLIAHDGSIQHRDDIPQDVKDVFKTAPEIDQRWIVELAADRQEFIDQG 517

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS---RSATSVE-KSTLKGVDGKLNA 925
           QS+NL+   + S   L   +  AW  GLK+ YY RS   R A  V  K+  K ++ +++ 
Sbjct: 518 QSVNLFFPPDVSIAYLHACHFLAWKKGLKSLYYNRSDKLRKADRVGVKAERKRIEDEIDM 577

Query: 926 VPVTD 930
             V D
Sbjct: 578 RAVAD 582


>gi|149197801|ref|ZP_01874850.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139022|gb|EDM27426.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 755

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 211/802 (26%), Positives = 348/802 (43%), Gaps = 81/802 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DGT    + +++  +++ A   L  VS   V   ++   +DG++  D+   +I 
Sbjct: 5   IQVTKRDGTREPIDLEKIHRVIDWAAKDLNHVSVSQVELRSHVQFHDGVTTEDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR++        P          L+ E+  + +E+G
Sbjct: 65  SAADLISEESPDYQYLAARLAIFHLRKKAYGQFDPPP----------LF-EHVTKLVEDG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E   + +   + N L + RD  F Y  ++ L  +Y +   + G+  E PQ  +
Sbjct: 114 KYDKHLIEDYTEDEFNEMENALDHWRDLNFSYAAVKQLEGKYLVQNRVTGAIYESPQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           M V   L   +  KE R    + FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 MLVGACL-FSKYPKETRMDYIIRFYDAASNFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  +            G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINASSSAIVKYVSQRAGIGLNAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH +VE  L L+ N G +  R   ++       L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHREVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYERLVKK 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              TLFSP +V  L+D + ++ E   E Y +  +   I+    + A+ L+    +    T
Sbjct: 351 GNITLFSPGDVPGLYDAFFEDQEKFEELYIKYENDPSIQK-ETMKAIELFSLFASERAST 409

Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607
           G  ++   D CN  SP Q  V  +  SNLC EI L        N  + E A+C L +INL
Sbjct: 410 GRIYLQNVDHCNTHSPFQADVAPIRQSNLCLEIALPTKPLEHINDENGEIALCTLSAINL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D++      AVR LD+++D   + +  A+ S+   R +G+G++ F   L
Sbjct: 470 GALES-----LDEMEELTELAVRALDSLLDYQDYPVPAARNSSLNRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y++  A  +  ++ E + +H I AS +LAQE G    F  + + QG+ P D+  
Sbjct: 525 AKNGVFYSNGSANNLVHKTFESLQYHLIKASCKLAQELGPCPKFNETTYSQGIMPTDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             + V D    N    L WD+LK+ VK  GMRNS   A+ P+ T + I   +  I+P   
Sbjct: 585 --SSVDD--FCNEDLHLDWDQLKEDVKKHGMRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK +  G    V    V E+++   + E +               ++P++   +   
Sbjct: 641 LIAVKQSKDGILKQV----VPEIEKYKSYYELLW--------------QMPNNTGYLQLV 682

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--------AWLMGLKT 899
           A               QK+IDQ  S N   D PS  + + +  +        A+  G+KT
Sbjct: 683 AI-------------MQKFIDQTISANTNYD-PSKFEGNMVPMKTLLTDLLTAYKYGVKT 728

Query: 900 TYYLRSRSATSVEKSTLKGVDG 921
            YY  +R      +    G  G
Sbjct: 729 LYYHNTRDGAGDSQEEDDGCAG 750


>gi|94987983|ref|YP_596084.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94991865|ref|YP_599964.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94541491|gb|ABF31540.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94545373|gb|ABF35420.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 726

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 213/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+  +YGK+  +I+  E Y++      IK    ISA  L++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRVYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     +++HA  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S           + TEC  C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECHSC 724


>gi|238852994|ref|ZP_04643392.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
 gi|238834389|gb|EEQ26628.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
          Length = 722

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 186/655 (28%), Positives = 308/655 (47%), Gaps = 78/655 (11%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ ++ + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QVLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGRKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 321 ITKE-YQNILNNPCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377

Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI  +N+ S                CNLGS+N+ A   +     DKL   + 
Sbjct: 378 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 433

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +++ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 434 DSIQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732
                  I++HA   S +LA+  GA+  FK S +          D+ V P      + E+
Sbjct: 491 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 548

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +
Sbjct: 549 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 608

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ +N+                             D+ +     A+E+ 
Sbjct: 609 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 639

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           P  +I+  +  QK++DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 640 PNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 694


>gi|326782537|ref|YP_004323091.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002751|gb|ADO97150.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 769

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 198/692 (28%), Positives = 317/692 (45%), Gaps = 46/692 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  +G     N  ++  +VE AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRNGEKTPLNLDKVHAMVEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V             H  +C         +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFGLRKAVYNGHPDGHPPLLEHVKKC---------VGI 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           GV    + +   D +   L + + +ERDF F Y G++ + D+Y +    +G   E PQ  
Sbjct: 118 GVYDSAILQKYTDEEWEKLNDFMDHERDFLFTYAGIRQVTDKYLVQDRSSGEIYETPQFM 177

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           +M VA  L  ++ +K  R     ++Y+ +S       TP +  +G R P  Q +SC L  
Sbjct: 178 YMMVAATL-FQDDDKFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVD 234

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T 
Sbjct: 235 VDDTLDSIFSSDMAIGQYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATV 294

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
               Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  Q
Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIQ 354

Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           N   +LFSP +V  L+D +G + F+  Y +YE      +  + RK + A  L   +L   
Sbjct: 355 NGTISLFSPHDVPGLYDAFGTDSFDARYVDYE-----SDQSIPRKTVDAQKLILDLLKER 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
            ETG  +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN
Sbjct: 410 AETGRVYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAIN 467

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +    N     D+L      AVR LD +ID   + ++ A++S    R++G+G +G    
Sbjct: 468 -VGKLKN----LDELDELCDLAVRGLDALIDYQEYPVKAAEQSTTNRRSLGIGYIGLAHY 522

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+ 
Sbjct: 523 LAKNGAKYDSAKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTY 582

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
              ++V DE+  N   +  W+ L+ R+   G+R+S   A  P+ + + +   +  I+P  
Sbjct: 583 K--SDV-DEIVPNEL-QCDWEFLRSRILQYGLRHSTLSAQMPSESSSVVSNATNGIEPPR 638

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
             L +K +  G    +V S+   +     LWD
Sbjct: 639 AYLSIKKSKKGPLKQIVPSYTTLKNAYTLLWD 670


>gi|157833699|pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
          Length = 761

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 214/789 (27%), Positives = 347/789 (43%), Gaps = 85/789 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN  + D+LA     AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INNLDELDELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSR 906
           KT YY  +R
Sbjct: 727 KTLYYQNTR 735


>gi|300926339|ref|ZP_07142139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301328724|ref|ZP_07221777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300417616|gb|EFK00927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300844872|gb|EFK72632.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 761

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 347/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           + +G+KT YY  +R
Sbjct: 722 YKLGVKTLYYQNTR 735


>gi|206576450|ref|YP_002237362.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288934290|ref|YP_003438349.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|290508493|ref|ZP_06547864.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
 gi|206565508|gb|ACI07284.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288889019|gb|ADC57337.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
 gi|289777887|gb|EFD85884.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
          Length = 761

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 218/797 (27%), Positives = 341/797 (42%), Gaps = 97/797 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E+G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581

Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +      G+++E         +    W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 582 TYKKDLDGIVSE---------SLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P   ++ +K++  G    VV  +   +     LW      ++  +DG         
Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891
                             ++     QK+IDQ+ S N   D    PSGK    +L      
Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720

Query: 892 AWLMGLKTTYYLRSRSA 908
           A+  G+KT YY  +R  
Sbjct: 721 AYKFGVKTLYYHNTRDG 737


>gi|325201995|gb|ADY97449.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240149]
          Length = 753

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 194/695 (27%), Positives = 310/695 (44%), Gaps = 52/695 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H +          +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGEYEPPHLYDHVK----------KLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VAM L   +  KE R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 170 VLVAMCL-FSKYPKETRLDYVKRFYDAVSTFKVSLPTPIM--SGVRTPTRQFSSCVLIEC 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RGL + I G   +  G IPF K+      
Sbjct: 227 DDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVK 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ + 
Sbjct: 287 SCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKG 346

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++   
Sbjct: 347 GNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQER 402

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  VH SNLC EI L        N  + E A+C L +
Sbjct: 403 AGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSA 462

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ + 
Sbjct: 463 FNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYA 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID
Sbjct: 518 YYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPID 577

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 578 TYKKDLDAVCGEPLHYD------WESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 631

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
           +P    + VK++  G    VV  F   +     LW
Sbjct: 632 EPPRGLVTVKASKDGILKQVVPEFETLKNAYETLW 666


>gi|57234895|ref|YP_181092.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           ethenogenes 195]
 gi|57225343|gb|AAW40400.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 761

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 180/635 (28%), Positives = 292/635 (45%), Gaps = 86/635 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           G   E  +  F RVA  +A+ E       +   R  EFYN+++   F+ ++PTL N+G  
Sbjct: 41  GKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLPNSPTLMNAGRE 100

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R     +  T G + G 
Sbjct: 101 LGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGP 160

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F++  +     + QGG R+GA  A L   H D+ +F+  +   G       + N +  
Sbjct: 161 VSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAG----VLTNFNLSVA 216

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM+ V     + L +P      H+                   GE  V  +++A  
Sbjct: 217 ITDKFMQAVKDGVDYDLLNP------HN-------------------GE--VVSRLNATE 249

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++ K++ M ++TG P I F D  N  +P   +G + S+N C E  L         CNLGS
Sbjct: 250 VFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYES----CNLGS 305

Query: 605 INL--LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           INL  +   +  Q   DY KL+  +++AVR LDNVID+N   + + ++     R IGLG+
Sbjct: 306 INLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGV 365

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF   L  L IPY S  ++++A+E M F++  A   S ELA ERG + +++GS++++  
Sbjct: 366 MGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELAVERGVFPAYRGSIYEKSG 425

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            P                                   MRN++C  IAPT T++ I G S 
Sbjct: 426 RP-----------------------------------MRNASCTTIAPTGTLSIIAGCSS 450

Query: 781 SIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P +   + ++ + G   + VN +     K+   + E +I  L   +G+  +   +P 
Sbjct: 451 GIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSEELIKSLA--EGAHLDEADVPA 508

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           + K++  TA +I P W +   +  QK  D A  +++N   +   G   + +Y+ A    L
Sbjct: 509 EAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFSREAVEGDVAE-VYKMAHDSNL 567

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           K     R  S      ST K  +       V +PN
Sbjct: 568 KGITIYRDGSREDQPMSTGKAENKIETPAAVVNPN 602


>gi|323171913|gb|EFZ57557.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 761

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 346/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|191166528|ref|ZP_03028358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|193062323|ref|ZP_03043418.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|193068151|ref|ZP_03049115.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194427206|ref|ZP_03059757.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209919686|ref|YP_002293770.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|218554797|ref|YP_002387710.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|256017604|ref|ZP_05431469.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|260844830|ref|YP_003222608.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856284|ref|YP_003230175.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868964|ref|YP_003235366.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|307311199|ref|ZP_07590843.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|309793114|ref|ZP_07687542.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|332278614|ref|ZP_08391027.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|190903488|gb|EDV63207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|192931989|gb|EDV84588.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|192958430|gb|EDV88869.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194414827|gb|EDX31098.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209912945|dbj|BAG78019.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|218361565|emb|CAQ99156.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI1]
 gi|257754933|dbj|BAI26435.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759977|dbj|BAI31474.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765320|dbj|BAI36815.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|306908705|gb|EFN39202.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|308123400|gb|EFO60662.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|315061534|gb|ADT75861.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli W]
 gi|320199829|gb|EFW74418.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323156511|gb|EFZ42665.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
 gi|323161695|gb|EFZ47578.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
 gi|323176839|gb|EFZ62429.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
 gi|323377885|gb|ADX50153.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
 gi|324020906|gb|EGB90125.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
 gi|324117883|gb|EGC11782.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|332100966|gb|EGJ04312.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 761

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 346/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|194736487|ref|YP_002115348.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194711989|gb|ACF91210.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
          Length = 780

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/815 (26%), Positives = 353/815 (43%), Gaps = 87/815 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++       +P 
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
              HH           + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356
             +Y +   + G   E  Q  ++ VA  L      +E R      FY+ +S+F     TP
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229

Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  SG R P  Q SSC L    D L  I               G+G +   +R LG+ I
Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G      G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  
Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531
           R   M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE     
Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590
            +    +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI L
Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463

Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                   N  + E A+C L + NL A         D+L      AVR LD ++D   + 
Sbjct: 464 PTKPLHDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA
Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+GA   F  + + +G+ PID+       +D +  +N      W++L++ +KT G+RNS
Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ P+ T + I   +  I+P    + +K++  G   ++   + +    +D ++  ++
Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879
            ++  +DG                           ++     QK+IDQ+ S N   D   
Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722

Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSAT 909
            PSGK    +L      A+  G+KT YY  +R   
Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGA 757


>gi|2914234|pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914236|pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914238|pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
          Length = 761

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SASQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|238920520|ref|YP_002934035.1| ribonucleotide-diphosphate reductase subunit alpha [Edwardsiella
           ictaluri 93-146]
 gi|238870089|gb|ACR69800.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 760

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 220/791 (27%), Positives = 342/791 (43%), Gaps = 89/791 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H           R IE G
Sbjct: 65  AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLIEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L       +   + + + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDTHLLTDFSRDEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q+
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQS 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     +FE  Y  YE+     +    RKI AV L+  M+   
Sbjct: 351 GEITLFSPSDVPGLYDAFFADQSQFERLYVQYEQDNSIRQ----RKIKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP   HV  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDAHVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  D ++LA+    AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPID 581

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 582 SYKKDLDAICSEPLHYD------WETLRTEIVRDGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + +K++  G    V                            +   ER+ D  +
Sbjct: 636 EPPRGYISIKASKDGILRQV----------------------------VPEYERLKDAYE 667

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895
            + A       + L+      QK+IDQ+ S N   D    PSG    K+L      A+ +
Sbjct: 668 LLWAMPGNDGYLQLV---GLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKL 724

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 725 GVKTLYYQNTR 735


>gi|187731504|ref|YP_001881064.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|187428496|gb|ACD07770.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
          Length = 761

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|224583239|ref|YP_002637037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467766|gb|ACN45596.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|326624096|gb|EGE30441.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 780

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 213/814 (26%), Positives = 353/814 (43%), Gaps = 87/814 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++       +P 
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
              HH           + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356
             +Y +   + G   E  Q  ++ VA  L      +E R      FY+ +S+F     TP
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229

Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  SG R P  Q SSC L    D L  I               G+G +   +R LG+ I
Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G      G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  
Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531
           R   M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE     
Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590
            +    +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI L
Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463

Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                   N  + E A+C L + NL A         D+L      AVR LD ++D   + 
Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA
Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+GA   F  + + +G+ PID+       +D +  +N      W++L++ +KT G+RNS
Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ P+ T + I   +  I+P    + +K++  G   ++   + +    +D ++  ++
Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879
            ++  +DG                           ++     QK+IDQ+ S N   D   
Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722

Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908
            PSGK    +L      A+  G+KT YY  +R  
Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756


>gi|16130169|ref|NP_416737.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74312754|ref|YP_311173.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|89109051|ref|AP_002831.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|157161717|ref|YP_001459035.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|170019453|ref|YP_001724407.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|170081852|ref|YP_001731172.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194433299|ref|ZP_03065579.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194436240|ref|ZP_03068342.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238901408|ref|YP_002927204.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|253772843|ref|YP_003035674.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162245|ref|YP_003045353.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|256022084|ref|ZP_05435949.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|297516088|ref|ZP_06934474.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
 gi|300931420|ref|ZP_07146749.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300948932|ref|ZP_07162993.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300958920|ref|ZP_07171023.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|301024216|ref|ZP_07187915.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|301647676|ref|ZP_07247470.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307138892|ref|ZP_07498248.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|312973511|ref|ZP_07787683.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|331642863|ref|ZP_08343998.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|2507304|sp|P00452|RIR1_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|2914218|pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914220|pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914222|pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914311|pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914313|pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914315|pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|284793830|pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793831|pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793832|pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|1799581|dbj|BAA16053.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|2367133|gb|AAC75294.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|46275274|emb|CAA30056.2| ribonucleotide reductase [Escherichia coli K-12]
 gi|73856231|gb|AAZ88938.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           sonnei Ss046]
 gi|157067397|gb|ABV06652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|169754381|gb|ACA77080.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|169889687|gb|ACB03394.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194418393|gb|EDX34482.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194424968|gb|EDX40953.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238863474|gb|ACR65472.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|242377868|emb|CAQ32636.1| nrdA, subunit of B1 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323887|gb|ACT28489.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974146|gb|ACT39817.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978313|gb|ACT43983.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|260448674|gb|ACX39096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
 gi|299880522|gb|EFI88733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|300314423|gb|EFJ64207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300451586|gb|EFK15206.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300460790|gb|EFK24283.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|301074206|gb|EFK89012.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|309702544|emb|CBJ01871.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli ETEC H10407]
 gi|310332106|gb|EFP99341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|315136866|dbj|BAJ44025.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
 gi|315615495|gb|EFU96127.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|320178794|gb|EFW53757.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|323168603|gb|EFZ54283.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
 gi|323936631|gb|EGB32917.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941072|gb|EGB37259.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323961540|gb|EGB57148.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973063|gb|EGB68257.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|331039661|gb|EGI11881.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332093863|gb|EGI98917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 5216-82]
 gi|332096124|gb|EGJ01127.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
 gi|332344014|gb|AEE57348.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 761

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|317131233|ref|YP_004090547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
 gi|315469212|gb|ADU25816.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
          Length = 762

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 288/625 (46%), Gaps = 88/625 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352
           +L  RY +   +G   E  +  F RVA  +A  +       + +  A  FY  ++   F+
Sbjct: 10  VLEKRYLIRDADGRPTETIEELFHRVADAIAAPDRTYNPDADIKALADRFYARMTKLEFL 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QL++CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G+
Sbjct: 70  PNSPTLMNAGRPLGQLAACFVLPVEDSMEAIFEAIKQAALIHKSGGGTGFSFSRLRPKGS 129

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            ++ T G + G + F++V N    AV QGG R+GA    L   H D+ EF+D +KN  D 
Sbjct: 130 TVNTTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRVDHPDILEFIDCKKNNAD- 188

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  I + FM+ V  +  + L  P+       L  +E               
Sbjct: 189 ---ITNFNISVGITEAFMRAVEADEEYDLIDPNTKESTGRLSARE--------------- 230

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
              VF KI   A WR         G P I F D  N  +    VG + S+N C E  L  
Sbjct: 231 ---VFEKIVDAA-WRN--------GEPGIIFLDRLNRDNMVPSVGAIESTNPCGEQPLLP 278

Query: 593 SSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  CNLGS+NL       +      ++DKLA  +R AV  LDNVID N + + +  
Sbjct: 279 YE----ACNLGSVNLHRMLRRQEDGASVINWDKLADVVRDAVHFLDNVIDANRYPLAQID 334

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R IGLG+MG+   L  L IPY S EAV + ++ M FI+  A SAS  LAQ RGA
Sbjct: 335 HMTKQTRKIGLGVMGWADLLLELGIPYNSDEAVALGEKVMGFITDTARSASAGLAQVRGA 394

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F+ S    G  P+                                   RN+    IA
Sbjct: 395 FPLFEESTLKNGT-PV-----------------------------------RNATMTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I G S  ++P +  +++++ M G +    N  L   L++R L+ E ++  +  
Sbjct: 419 PTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTELVEANPVLRQLLEERGLYSEDLMRQIA- 477

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
            +GS+ +I+ +P+D++++   A +I P + I+  +  Q+  D A S  + +  + +   +
Sbjct: 478 QEGSLAHIDALPEDIRRVFVCAHDISPEYHIKMQAAFQRRTDNAVSKTVNFAHDATIADV 537

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSA 908
             +Y  A+ +G K  T Y   SR A
Sbjct: 538 RRVYMLAYELGCKGVTIYRDGSRDA 562


>gi|330445622|ref|ZP_08309274.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489813|dbj|GAA03771.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 755

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 214/804 (26%), Positives = 358/804 (44%), Gaps = 85/804 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++     ++ P+         LY E+    + +
Sbjct: 64  KAAADLISEETPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LY-EHVKNLVAK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDEHLLEDYTEEEFAVMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ +A  L   +  KE R      FY+  S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILIAAAL-FNKYPKETRLDYIKRFYDAASLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +    IK    I A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L      N   E  E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A   ++  D ++LA      VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGA--IDSLDDLEELA---ELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++  +   R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKQDIDKIC-SAELRYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G   ++   +    K ++ ++  ++ ++  +DG              
Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKENYE--LLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMG 896
                        ++     QK+IDQA S N   D   +P GK  +  + +    A+ +G
Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQPGGKVPMKLLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920
           +KT YY  +R   S  +  +   D
Sbjct: 726 VKTLYYHNTRDGASDNQGDMAADD 749


>gi|209558900|ref|YP_002285372.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540101|gb|ACI60677.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 726

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 213/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  NSG  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA  L++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYTYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S           + TEC+ C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECQSC 724


>gi|114766103|ref|ZP_01445112.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114541658|gb|EAU44699.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 707

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 197/662 (29%), Positives = 314/662 (47%), Gaps = 72/662 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  +++ F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +   +  A+
Sbjct: 85  DAAFKKKFRFPTFLGAFKYYTSYTLKTRDGKRFLERYEDRVVMVALALARGD---QDLAM 141

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F   + S  F  +TPT  N+G +   +L SCFL  + D++  I   +     L+K  GG
Sbjct: 142 SFMEEILSGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 201

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 202 VALMLTNIREHGAPIKGIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 261

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   E  
Sbjct: 262 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEPMYLFSPHDVEKIYGVPFSEIS 321

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y+   +   I+   KI+A + ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 322 VT-EKYDEMVEDKRIRK-TKINARSFFQTLAEIQFESGYPYIMFEDTVNRMNPID--GRI 377

Query: 580 HSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI  +N +SE               CNLGS+N+         D   L +T+  
Sbjct: 378 TMSNLCSEILQVNEASEYNEDLSYARMGTDISCNLGSLNIA-----KSMDGRDLGATVEA 432

Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V +++   ++   +K N    AIGLG M     L   HI Y SPE VE     
Sbjct: 433 AIRALTAVSEMSAIDSVPSIRKGNDESHAIGLGQMNLHGFLAREHIHYGSPEGVEFTSVY 492

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELA 737
              +++HAI AS  LA+ERG ++  F  S +  GVF         +     +AE+ D +A
Sbjct: 493 FATVAYHAIRASCALAKERGESFKGFAASDYASGVFFDKYTERDWLPESDRVAELFDGIA 552

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +   SR  W  LK  V   G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 553 L--PSRADWAALKADVMEHGLYNRNLQAVPPTGSISYINNSTSSIHP------------- 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                   +V++++ R    E  I  + Y    + N     D+L + +  A+EI P  LI
Sbjct: 598 --------IVSKIEIR---KEGKIGRVYYPAAFMNN-----DNL-EYYRDAYEIGPEALI 640

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           E+ +   + +DQ  SL L+   E + + ++     AW  G+KT YY+R R  T++E + +
Sbjct: 641 ETYAAATEHVDQGLSLTLFFPAEATTRDINRAQILAWKKGIKTIYYVRLRQ-TALEGTEV 699

Query: 917 KG 918
           +G
Sbjct: 700 EG 701


>gi|188492275|ref|ZP_02999545.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|188487474|gb|EDU62577.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
          Length = 761

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 213/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDDSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|269102946|ref|ZP_06155643.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162844|gb|EEZ41340.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 755

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 211/794 (26%), Positives = 353/794 (44%), Gaps = 85/794 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  +++ A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTETLDLDKIHRVLDWAAEGLENVSVSQVELKSHIQFYDGMRTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               E   LY ++    +E+
Sbjct: 64  KAAADLISEETPDYQYMAARLAIFHLRKKAYG----------QFEPPTLY-KHVSHLVEQ 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E   + +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTEEEFAVIDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ +A  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YVLIAACLFAK-YPKETRLDYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE+      IK  + + A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGLYDAFFADQVEFERLYTQYEQDE---SIKK-QSVKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L      N   E  E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A   ++  D ++LA      VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGA--IDSLDDLEELA---ELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + AS+ LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASLGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++      R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKKDIDKICSAEL-RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G   ++   +    K +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDG---ILKQVVPEYTKYKDNYE--LLWNIGGNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWLMG 896
                        ++     QK+IDQA S N   D   +P GK  +  + +    A+ +G
Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSRQPGGKVPMKLLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATS 910
           +KT YY  +R   S
Sbjct: 726 VKTLYYHNTRDGAS 739


>gi|328943410|ref|ZP_08240875.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
 gi|327491379|gb|EGF23153.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 756

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 203/705 (28%), Positives = 317/705 (44%), Gaps = 91/705 (12%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L YE+ F F   +G    Y  Y L  +  R    + F  RV M            A    
Sbjct: 105 LAYEQHFEFLSLMGAMKFYMAYALQ-SDDRTTYLERFEDRVVMCALFLANGDVALARNLV 163

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             L S  F  +TPT  N+G  R  +  SC+L  V D++  I   +  +  L+K  GG+  
Sbjct: 164 LDLMSNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESIARGIGTSLQLSKRGGGVAL 223

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I G   ++ GV+P +K+  DT    NQ G+R+GA   YL   H D+  F
Sbjct: 224 CLTNLRETGAPIKGFAHQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRF 283

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    +PD+  K   +N    LFSP ++   +     +  I  
Sbjct: 284 LDTKRENADEKVRIKSLSLGVIVPDITFKLAKENKDMALFSPYDIEKEYKCSMADMSIT- 342

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+   +   IK    ISA   ++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 343 EKYDELVNNPRIKK-DYISARKFFQTIAELQFESGYPYILFEDTVNRRNPHKKAGRIVMS 401

Query: 583 NLCTEI----TLNSSSE-----ETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    T +S +E     +T V   CNLGSIN+ A   +      + + TI+ A+ 
Sbjct: 402 NLCSEIAQVSTPSSYTEDLGFTQTGVDICCNLGSINIAAAMDHAS----EFSRTIKDAIV 457

Query: 631 VLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            LD V    D++C  ++ K  K NH   A+GLG M     L   HI YAS EAV+  D  
Sbjct: 458 ALDRVSRSSDLSCAPSVNKGNKLNH---AVGLGAMNLHGFLATHHIYYASAEAVDFVDMF 514

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVF----------PIDS--IGLLAEVRD 734
              +++HA  AS ELAQ  GA++ F  S +  G +          P       LLA+   
Sbjct: 515 FYAMAYHAFKASSELAQTEGAFAGFADSEYADGTYFKKYTEHKIAPATPRIAKLLADCHF 574

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           EL   +     W EL K ++  G+ NS+ MA+APT +I+ +   + S+ P          
Sbjct: 575 ELPTQQD----WQELVKDIRAHGLANSHLMAVAPTGSISYLSSCTPSLQP---------- 620

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AF 849
                      +V+ ++ R              +G +G +     +I DD  K +   A+
Sbjct: 621 -----------VVSPVETRK-------------EGKVGRVYVPAYKISDDTYKYYQDGAY 656

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           E+    +I   +  QK +DQA SL L++  + + + L+  Y  A+     + YY+R R  
Sbjct: 657 EVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLNRAYIYAFKKKCDSIYYVRIRQD 716

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                  L+  +   +A    +  S+ H       C   +EC+VC
Sbjct: 717 VLEGSEHLESDEILPDAAKSDEKKSAFH-------CDGSSECQVC 754


>gi|323952029|gb|EGB47903.1| ribonucleotide reductase [Escherichia coli H252]
          Length = 761

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 214/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|197334709|ref|YP_002156002.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
 gi|197316199|gb|ACH65646.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
          Length = 758

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 219/797 (27%), Positives = 346/797 (43%), Gaps = 91/797 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+   +I
Sbjct: 4   QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E  P+Y  + AR  +  LR++       +P    +H +  +    + ++I E
Sbjct: 64  KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQF--EPPTLFNHVLNLIELGKYDKHIVE 121

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
                    +  +FDL  +   + + RD  F Y  ++ L  +YF+   + G+  E  Q  
Sbjct: 122 DY-------TQEEFDL--MDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKESRLDYIKRFYDATSQFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
               +LFSP +V  L+D +     EFE  YE YE+     +  + R+ + A+ L+  ++ 
Sbjct: 350 GGNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQ-----DTSIKRETVKAIELFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A          +L      AVR LD ++D   + +  A KS    R +G+G++ 
Sbjct: 465 SAFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ P
Sbjct: 520 YAYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILP 579

Query: 723 IDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           IDS       +D  A+ N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  
Sbjct: 580 IDSYK-----KDIDAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I+P    + VK++  G    VV  F   +     LW      ++  +DG           
Sbjct: 635 IEPPRGFVSVKASKDGILKQVVPDFANLKNNYELLW------NIGSNDG----------- 677

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AW 893
                           ++     QK++DQA S N   D   +P+GK  +  + +    A+
Sbjct: 678 ---------------YLQLVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATS 910
            +GLKT YY  +R   S
Sbjct: 723 KLGLKTLYYHNTRDGAS 739


>gi|161613002|ref|YP_001586967.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362366|gb|ABX66134.1| hypothetical protein SPAB_00708 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 780

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 213/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++       +P 
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
              HH           + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356
             +Y +   + G   E  Q  ++ VA  L      +E R      FY+ +S+F     TP
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLSYVKRFYDAVSTFKISLPTP 229

Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  SG R P  Q SSC L    D L  I               G+G +   +R LG+ I
Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G      G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  
Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531
           R   M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE     
Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590
            +    +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI L
Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463

Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                   N  + E A+C L + NL A         D+L      AVR LD ++D   + 
Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA
Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+GA   F  + + +G+ PID+       +D +  +N      W +L++ +KT G+RNS
Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNS 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ P+ T + I   +  I+P    + +K++  G   ++   + +    +D ++  ++
Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879
            ++  +DG                           ++     QK+IDQ+ S N   D   
Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722

Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908
            PSGK    +L      A+  G+KT YY  +R  
Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756


>gi|296103862|ref|YP_003614008.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058321|gb|ADF63059.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 761

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 215/791 (27%), Positives = 346/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      ++ R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRDTRLEYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NAPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ +K++  G   ++   + +  + +D ++  ++ ++  +DG               
Sbjct: 638 PRGHVSIKASKDG---ILRQVVPDYEQLKDNYE--LLWEMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYHNTRDG 737


>gi|289579197|ref|YP_003477824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
 gi|289528910|gb|ADD03262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
          Length = 770

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 185/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A       K  + E     FY+++    F
Sbjct: 9   KVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFYDMMVDLDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDRKYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL           + DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYEIDYDKLKETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEELMEFIDKTSKEASIKLAEKRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------TGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M     V VN        +R  + + ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKKVAIERGFYSDELMREIA- 477

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + +E + + +
Sbjct: 478 QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYKLGCKGVTIYRDGSRES 562


>gi|71892251|ref|YP_277985.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796357|gb|AAZ41108.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 760

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 211/791 (26%), Positives = 349/791 (44%), Gaps = 95/791 (12%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNY 216
           N  ++  ++  A  GL+ VS   V   ++   Y+G+  SD++  +I ++  LI E+EP+Y
Sbjct: 18  NLDKIHRVINWAAKGLEQVSVSQVELRSHIQFYNGIKTSDIQETIIKAAADLISEEEPDY 77

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             + AR  +  LR++       +P K  +H ++ +    + +++ +   A   ++ M  F
Sbjct: 78  QYLAARLAVFHLRKKAYGQF--EPPKLYNHVLRLIKIGKYDQHLLDDYNAEEFNQ-MDTF 134

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETE 334
                   + + RD  F Y  ++ L  +Y +   + G   E  Q  ++  A  L  K  +
Sbjct: 135 --------IDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILTAACLFSKYPK 186

Query: 335 KEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQEN 390
           K +     +FY+ +S+F    +TP +  SG R P  Q SSC L    D L  I       
Sbjct: 187 KTRMHYIQQFYDAISTFKISLATPIM--SGVRTPTRQFSSCVLIECDDSLDSINATSSSI 244

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
                   G+G +   +R LG+ I        G IPF K       + +QGG R GA   
Sbjct: 245 VKYVAQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATL 304

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +   WH+++E  L L+ N G D  R   ++    I  L  +R+ +    TLFSP +V  L
Sbjct: 305 FYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIEGKYITLFSPSDVPGL 364

Query: 511 HDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++ +     EFE  Y  YE   +       RKI A+ L+  M+     TG  +I   D C
Sbjct: 365 YEAFFNNQNEFEHLYNIYENDHNIRH----RKIKAIELFSLMMQERASTGRIYIQHTDHC 420

Query: 568 NIRSPQQHVGV-VHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618
           N  S    +   V  SNLC EITL        N  + E A+C L + NL      N  + 
Sbjct: 421 NTHSAFDSIAAPVRQSNLCLEITLPTKPLNNINDHNGEIALCTLSAFNL-----GNIENL 475

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L+      VR LD ++D   + I  A++S    R++G+G++ +   L    + Y+   
Sbjct: 476 DDLSELSILIVRALDALLDYQHYPIPAAQRSAVRRRSLGIGVINYAYYLAKHGVRYSDGS 535

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEVRDEL 736
           A ++   + E I +H + AS  LAQE+G+   F  + + +G+ PID+    L + + + L
Sbjct: 536 ANKLTHRTFEAIQYHLLRASNNLAQEKGSCEWFNDTSYSKGILPIDTYKTDLNSFINEPL 595

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             N      W++L+ ++K  G+RNS   A+ P+ T + I   +  I+P    + +K++ +
Sbjct: 596 HYN------WEDLRVKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISIKTSKN 649

Query: 797 GDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           G    VV  F+  +     LW                   +IPD+   +           
Sbjct: 650 GILRQVVPEFIKLKSDYELLW-------------------QIPDNRGYLQLVGI------ 684

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG--------KKL--DFIYRQAWLMGLKTTYYLRS 905
                   QK+IDQ+ S N   D PS         K+L  D +Y  A+ +G+KT YY  +
Sbjct: 685 -------MQKFIDQSISTNTNYD-PSRFPENKVPMKQLLSDLLY--AYRLGIKTLYYHNT 734

Query: 906 RSATSVEKSTL 916
           R      + TL
Sbjct: 735 RDGAQDVQKTL 745


>gi|308233464|ref|ZP_07664201.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 735

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 203/705 (28%), Positives = 317/705 (44%), Gaps = 91/705 (12%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L YE+ F F   +G    Y  Y L  +  R    + F  RV M            A    
Sbjct: 84  LAYEQHFEFLSLMGAMKFYMAYALQ-SDDRTTYLERFEDRVVMCALFLANGDVALARNLV 142

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             L S  F  +TPT  N+G  R  +  SC+L  V D++  I   +  +  L+K  GG+  
Sbjct: 143 LDLMSNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESIARGIGTSLQLSKRGGGVAL 202

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I G   ++ GV+P +K+  DT    NQ G+R+GA   YL   H D+  F
Sbjct: 203 CLTNLRETGAPIKGFAHQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRF 262

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    +PD+  K   +N    LFSP ++   +     +  I  
Sbjct: 263 LDTKRENADEKVRIKSLSLGVIVPDITFKLAKENKDMALFSPYDIEKEYKCSMADMSIT- 321

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+   +   IK    ISA   ++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 322 EKYDELVNNPRIKK-DYISARKFFQTIAELQFESGYPYILFEDTVNRRNPHKKAGRIVMS 380

Query: 583 NLCTEI----TLNSSSE-----ETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    T +S +E     +T V   CNLGSIN+ A   +      + + TI+ A+ 
Sbjct: 381 NLCSEIAQVSTPSSYTEDLGFTQTGVDICCNLGSINIAAAMDHAS----EFSRTIKDAIV 436

Query: 631 VLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            LD V    D++C  ++ K  K NH   A+GLG M     L   HI YAS EAV+  D  
Sbjct: 437 ALDRVSRSSDLSCAPSVNKGNKLNH---AVGLGAMNLHGFLATHHIYYASAEAVDFVDMF 493

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVF----------PIDS--IGLLAEVRD 734
              +++HA  AS ELAQ  GA++ F  S +  G +          P       LLA+   
Sbjct: 494 FYAMAYHAFKASSELAQTEGAFAGFADSEYADGTYFKKYTEHKIAPATPRIAKLLADCHF 553

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           EL   +     W EL K ++  G+ NS+ MA+APT +I+ +   + S+ P          
Sbjct: 554 ELPTQQD----WQELVKDIRAHGLANSHLMAVAPTGSISYLSSCTPSLQP---------- 599

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AF 849
                      +V+ ++ R              +G +G +     +I DD  K +   A+
Sbjct: 600 -----------VVSPVETR-------------KEGKVGRVYVPAYKISDDTYKYYQDGAY 635

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           E+    +I   +  QK +DQA SL L++  + + + L+  Y  A+     + YY+R R  
Sbjct: 636 EVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLNRAYIYAFKKKCDSIYYVRIRQD 695

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                  L+  +   +A    +  S+ H       C   +EC+VC
Sbjct: 696 VLEGSEHLESDEILPDAAKSDEKKSAFH-------CDGSSECQVC 733


>gi|261346129|ref|ZP_05973773.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282565782|gb|EFB71317.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 763

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 218/805 (27%), Positives = 349/805 (43%), Gaps = 91/805 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL +VS  +V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHKVIAWAAEGLNNVSVSLVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++     ++ P+  TH +          R +E G
Sbjct: 65  AAADLITGDTPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYTHVK----------RLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E   + D   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N
Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKN 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551
              TLFSP +V  L+D +     EFE  Y  YE+  +       RK  + AV L+  M+ 
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDEN------IRKSSVKAVELFSLMMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A  +      D+L      AVR LD ++D   + I  A+K +   R +G+G++ 
Sbjct: 465 SAFNLGAINS-----LDELEELAVLAVRALDALLDYQDYPIPAAQKGSMGRRTLGVGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV P
Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLP 579

Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           ID+    L ++ DE          W+ L+K ++  G+RNS   A+ P+ T + I   +  
Sbjct: 580 IDTYKRELDKLTDE-----PLHYDWETLRKEIQQYGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + +K++  G            L+Q       ++ D +   G+   + ++P + 
Sbjct: 635 IEPPRGYVSIKASKDGI-----------LRQ-------VVPDYENLKGAYELLWQMPSNN 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWL 894
             +                   QK+IDQ+ S N   D    PSGK  ++ + +    A+ 
Sbjct: 677 GYLQLVGI-------------MQKFIDQSISANTNYDPTRFPSGKVPMNQLLKDLLLAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919
            G+KT YY  +R      +  L+ V
Sbjct: 724 FGVKTLYYHNTRDGAEDVQGDLEEV 748


>gi|91200074|emb|CAJ73117.1| similar to ribonucleoside-diphosphate reductase 1 alpha chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 589

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 185/639 (28%), Positives = 303/639 (47%), Gaps = 87/639 (13%)

Query: 301 LYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHFMC 353
           L  RY   ++ G  IE P+  F RVA  +A  +    K+A       EFY+L++S  F+ 
Sbjct: 16  LEKRYLKRNVLGKIIESPEDMFRRVAKNIASVDLIYNKKADIVSMEEEFYHLMTSLQFLP 75

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++P L N+G    QL +CF+  V D + GIF  +++ A++ K  GG G  ++ +R     
Sbjct: 76  NSPALMNAGRHLQQLLACFVLPVEDSIEGIFDTVKQAALIHKSGGGTGFSFSRIRPKNDI 135

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  + G + G + F+KV N+   A+NQGG R+GA  A L   H D+ +F+  +   G   
Sbjct: 136 VSASCGMASGPVSFMKVFNEATEAINQGGFRRGANMAALNVNHPDIFDFIHAKNTEG--- 192

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  I + FM+ V  +A + L +P                          R +
Sbjct: 193 -VLTNFNISVGITNAFMEAVENDAPFPLINP--------------------------RTK 225

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           + V + I A  L+++++   ++ G P + F D  N  +P   +G +  +N C E  L   
Sbjct: 226 L-VVKTIRAKVLFQEIVQSAWKNGEPGVLFIDAINAANPTPLLGSIEGTNPCGEQPL--- 281

Query: 594 SEETAVCNLGSINL--LAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 C LGS+N+  +  + N+ ++ +   L  TI  AV  LDNVID   H + + +  
Sbjct: 282 -LPYEACVLGSVNVSQMTTYKNDHYEMNWHTLEKTIHLAVHFLDNVIDATKHPLPQIEVL 340

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              +R IGLG+MGF   L  L+I Y S EA+   D+ + F S  A  AS  LA ERG + 
Sbjct: 341 TKGNRKIGLGIMGFADLLIKLNISYNSEEAMRFTDKLLRFFSGKANEASERLASERGMFP 400

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++ S++ Q   P                                    RN+    IAPT
Sbjct: 401 NYEKSIYAQQNGP----------------------------------KYRNATRTTIAPT 426

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  I+P +   Y ++ +  G    ++ F  N  K+R L+ + +++++K  +
Sbjct: 427 GTISIIANCSSGIEPLFAIAYTRNVLVEGGLPEIHPFFENVAKKRGLYTDKLLAEVK-RE 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           GSI NI  IP D+K+I  TA +I P + ++  S  QK+ID A S  + +  E + + ++ 
Sbjct: 486 GSIQNIAYIPYDIKRIFTTARDISPEYHVKIQSICQKYIDNAVSKTINFPKESTAEDVEK 545

Query: 888 IYRQAWLMGLK--TTYYLRSR--SATSVEKSTLKGVDGK 922
           ++  A+  G K  T Y  +SR   A S E +  K + GK
Sbjct: 546 VFLLAYRSGCKGITIYRDKSRMSQALSFECACTKDLIGK 584


>gi|291618169|ref|YP_003520911.1| NrdA [Pantoea ananatis LMG 20103]
 gi|291153199|gb|ADD77783.1| NrdA [Pantoea ananatis LMG 20103]
 gi|327394562|dbj|BAK11984.1| ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [Pantoea
           ananatis AJ13355]
          Length = 761

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 211/792 (26%), Positives = 350/792 (44%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + ++ G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALYDQ-VVKMVDLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDYSREEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  +  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKMMYQRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDSSIRK----QRVKAVDLFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDASIAPVRQSNLCLEIALPTKPLSDVNDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A   ++  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ F  
Sbjct: 468 NLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PID+
Sbjct: 523 YLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDT 582

Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D  A+ N    L W+ L++++KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDAICNEPLHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ +K++  G   ++   +    + +D ++  ++ D+  +DG               
Sbjct: 638 PRGHISIKASKDG---ILRQVVPEYERLKDQYE--LLWDMPSNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897
                       ++     QK+IDQA S N   D    P+G    K+L      A+  G+
Sbjct: 678 -----------YLQLVGVMQKFIDQAISSNTNYDPSRFPNGKVPMKQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|289432508|ref|YP_003462381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288946228|gb|ADC73925.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 599

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 307/648 (47%), Gaps = 97/648 (14%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351
           ++L  RY    +  R IE P+  F RVA  +A  E      T+  +   EFY  +S   F
Sbjct: 22  RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  +   GD
Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISCK---GD 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               T + N +  +   FM +V     + + +P                           
Sbjct: 199 PNALT-NFNISVVVTRDFMTKVRSGEDYDIINPHT------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C E TL 
Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N     + +
Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +LA+ RG+
Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEIRGS 406

Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           + +++GS++D  G  P                                   MRN+ C +I
Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821
           APT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R+ +      E ++
Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
           S    HD     +E IPD LK++  TA  I P W I   +  QK+ D A S  + +  E 
Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924
           + + +  ++  A+  GLK  T Y   SR+A  +   +S +K VD  L+
Sbjct: 547 TREDMANVFNMAYDQGLKGVTVYRDGSRAAQPLCTSESGVKLVDQYLD 594


>gi|205359118|ref|ZP_02667324.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205338509|gb|EDZ25273.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 780

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 213/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++       +P 
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPP 119

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
              HH           + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356
             +Y +   + G   E  Q  ++ VA  L      +E R      FY+ +S+F     TP
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229

Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  SG R P  Q SSC L    D L  I               G+G +   +R LG+ I
Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G      G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  
Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531
           R   M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE     
Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSI 407

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590
            +    +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI L
Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463

Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                   N  + E A+C L + NL A         D+L      AVR LD ++D   + 
Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA
Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+GA   F  + + +G+ PID+       +D +  +N      W +L++ +KT G+RNS
Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNS 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ P+ T + I   +  I+P    + +K++  G   ++   + +    +D ++  ++
Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879
            ++  +DG                           ++     QK+IDQ+ S N   D   
Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722

Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908
            PSGK    +L      A+  G+KT YY  +R  
Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756


>gi|256830880|ref|YP_003159608.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580056|gb|ACU91192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
          Length = 744

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 296/610 (48%), Gaps = 89/610 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351
           +L  RY    ++G+ IE  +  F RVA  +A  E        + +  A  FY+L++ + F
Sbjct: 22  VLKKRYQRKGLDGTPIETAKEMFWRVAASIASMEKNYPSSPFKPKDLARTFYSLMTEYDF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  +T +R   
Sbjct: 82  LPNSPTLMNAGTELGQLAACFVLPVGDSMDEIFDAVKNAALIHKSGGGTGFSFTRLRPKD 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G I FLK+ N     V QGG R+GA    L   H D+ EF+  ++  GD
Sbjct: 142 SRVGSTGGVASGPISFLKIFNTATEQVKQGGTRRGANMGILRVDHPDILEFIRAKEREGD 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V  +  + L +P                           
Sbjct: 202 ----LNNFNLSVALTEKFMQAVENDEEYPLVAPQSQ------------------------ 233

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V  K+ A  ++  ++   +E+G P I F D  N  +P    G + S+N C E  L 
Sbjct: 234 ---EVIEKLKAREVFELLVRKAWESGDPGIIFIDRINRDNPNPDQGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   CNLGSINL A F        + D+D+L   +  +VR LDNVID + + +++ 
Sbjct: 291 PYE----ACNLGSINL-ARFVREKDEGVEIDWDRLREVVHLSVRFLDNVIDASEYPLDRI 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++   +R IGLG+MG+   L+ L +PY S  A+ +A++ M FI   A SAS ELA+ERG
Sbjct: 346 TETVRKNRKIGLGVMGWADLLYQLGLPYDSRRAIVLAEQMMNFIQKEARSASKELAKERG 405

Query: 707 AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            + S++ S++ +Q + P                                    R++    
Sbjct: 406 PFPSYETSIYKEQNLGP-----------------------------------YRHATTTT 430

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T++ I G S  ++P +   +V+  M G+  T  NSF V  L  +  + E +++++
Sbjct: 431 IAPTGTLSIIAGCSSGVEPLFALCFVRQVMDGEKLTEANSFFVKALHDQGCYSEKLMAEV 490

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
               GS+ N++ +P++L+ ++ T+ +I+P W ++  +  QK  D A S  + L  P+   
Sbjct: 491 -IEKGSVKNMDFLPEELRNVYVTSMDIEPQWHLKMQAAFQKHTDNAVSKTVNL--PNSAT 547

Query: 885 LDFIYRQAWL 894
            + IY+  W+
Sbjct: 548 QEDIYQIYWM 557


>gi|197262131|ref|ZP_03162205.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240386|gb|EDY23006.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 761

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLQEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|200388863|ref|ZP_03215475.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605961|gb|EDZ04506.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 761

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 212/793 (26%), Positives = 343/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE     G+    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NGDSIRKQRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|152971180|ref|YP_001336289.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956029|gb|ABR78059.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 761

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 218/797 (27%), Positives = 340/797 (42%), Gaps = 97/797 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E+G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581

Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +      G+++E              W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 582 TYKKDLDGIVSE---------PLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P   ++ +K++  G    VV  +   +     LW      ++  +DG         
Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891
                             ++     QK+IDQ+ S N   D    PSGK    +L      
Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720

Query: 892 AWLMGLKTTYYLRSRSA 908
           A+  G+KT YY  +R  
Sbjct: 721 AYKFGVKTLYYHNTRDG 737


>gi|322411233|gb|EFY02141.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 728

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 205/762 (26%), Positives = 354/762 (46%), Gaps = 104/762 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KK   + H +   +  E   RY++E +    +    ++  L YL  +  YE+     
Sbjct: 15  TRFKKADGSYHFDSDTIAVE---RYLDEHISPNRMMFPSLEVKLAYLIKEGYYEQAIFDP 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF+Y   Q   D  FL++ G+ ++  Q++ ++   G    ET +++  +   
Sbjct: 72  YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127

Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                     +NL+       F  +TPT  N+G  R  +  SC+L  + D++  I  A+ 
Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA 
Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP    
Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK+  +I+  E Y +      IK    ISA  L++ +  + FE+G+P++ F D 
Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614
            N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A  
Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINIAEAMA-- 421

Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             D    +  I T++R LD V    D++C  +IEK   +NH   A+GLG M     L   
Sbjct: 422 --DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  G +    +   A
Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536

Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           + + +    L  +   +LP    W  L + ++T G+ N++ +A+APT +I+ +   + S+
Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + V+   +     V ++ +N+             +  Y++              
Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+ +   + Y
Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVP---VTDPNSSTHSLGI 940
           Y+R R    +  S     D +L+ V    +TD N+   S  I
Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDMVDKNGLTDTNNECQSCMI 728


>gi|256751879|ref|ZP_05492751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749286|gb|EEU62318.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 770

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 185/625 (29%), Positives = 290/625 (46%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A    + +   +  AV+  FY+++    F
Sbjct: 9   KVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFYDMMVDLDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL       +     DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M   +   VN        +R  + E ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  + + +E + + +
Sbjct: 479 R-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562


>gi|238895769|ref|YP_002920505.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330000611|ref|ZP_08303754.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|238548087|dbj|BAH64438.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328537953|gb|EGF64132.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 761

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 218/797 (27%), Positives = 340/797 (42%), Gaps = 97/797 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E+G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQD----DTIRKQRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581

Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +      G+++E              W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 582 TYKKDLDGIVSE---------PLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P   ++ +K++  G    VV  +   +     LW      ++  +DG         
Sbjct: 633 NGIEPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891
                             ++     QK+IDQ+ S N   D    PSGK    +L      
Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLN 720

Query: 892 AWLMGLKTTYYLRSRSA 908
           A+  G+KT YY  +R  
Sbjct: 721 AYKFGVKTLYYHNTRDG 737


>gi|237732273|ref|ZP_04562754.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226907812|gb|EEH93730.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 761

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYGEF--EPPKLFDH---------VVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ + 
Sbjct: 467 FNLGAIES-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N    + W++L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NEPLHMDWEQLRESIKTYGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|288562861|pdb|2X3I|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562862|pdb|2X3I|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562863|pdb|2X3I|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662322|pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662323|pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662324|pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|284793845|pdb|2X1Y|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793846|pdb|2X1Y|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793847|pdb|2X1Y|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662301|pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662302|pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662303|pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|303324818|pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324819|pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324820|pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|283806799|pdb|2X0Z|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806800|pdb|2X0Z|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806801|pdb|2X0Z|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662294|pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662295|pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662296|pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|303324811|pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324812|pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324813|pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|251781890|ref|YP_002996192.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390519|dbj|BAH80978.1| ribonucleoside-diphosphate reductase alphachain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 728

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 205/763 (26%), Positives = 355/763 (46%), Gaps = 104/763 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KK   + H +   +  E   RY++E +   L+    ++  L YL  +  YE+     
Sbjct: 15  TRFKKTDGSYHFDSDAIAVE---RYLDEQISPNLVMFPSLEEKLAYLIKEGYYEQAIFDL 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF+Y   Q   D  FL++ G+ ++  Q++ ++   G    ET +++  +   
Sbjct: 72  YPDDVIKEAFQYAYQQ---DYRFLNLMGA-MKFYQSYALKTLDGKYYLETVEDRVVMNAL 127

Query: 342 ---------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                     +NL+       F  +TPT  N+G  R  +  SC+L  + D++  I  A+ 
Sbjct: 128 FLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIG 187

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            +  L+K  GG+    T +R +GA I     ++ G++P +K+  D+    NQ G+R+GA 
Sbjct: 188 TSLQLSKRGGGVALCLTNLREIGAPIKEIENQATGIVPVMKLLEDSFSYANQLGQRQGAG 247

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP    
Sbjct: 248 AVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKEMALFSP---Y 304

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK+  +I+  E Y +      IK    ISA  L++ +  + FE+G+P++ F D 
Sbjct: 305 DIKRVYGKDMSDISITEEYNKLLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDT 363

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614
            N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A  
Sbjct: 364 VNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGSINI----AEA 419

Query: 615 QFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             D    +  I T++R LD V    D++C  +IEK   +NH   A+GLG M     L   
Sbjct: 420 MTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANH---AVGLGAMNLHGFLATN 476

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  G +    +   A
Sbjct: 477 HLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFKQYVIEDA 536

Query: 731 EVRDE----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           + + +    L  +   +LP    W  L + ++T G+ N++ +A+APT +I+ +   + S+
Sbjct: 537 KPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYLSSCTPSL 596

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + V+   +     V ++ +N+             +  Y++              
Sbjct: 597 QPVVAPVEVRKEGNLGRIYVPAYQINQ------------ENYAYYERG------------ 632

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+ +   + Y
Sbjct: 633 -----AYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKLKCASIY 687

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           Y+R R    +  S     D +L++V   D N  T ++    SC
Sbjct: 688 YVRVRQEV-LAGSEQYDEDSQLDSV---DKNGLTDTINECQSC 726


>gi|297545362|ref|YP_003677664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843137|gb|ADH61653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 770

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 185/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A       K  + E     FY+++    F
Sbjct: 9   KVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFYDMMVDLDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDKKYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL           + DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYEIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAVE+ ++ MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEKLMEFIDKTSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGINIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M     V VN        +R  + + ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKEVAIERGFYSDELMREIA- 477

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K++   A +IDP W I+  +  QK +D A S  + + +E + + +
Sbjct: 478 QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHIKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RKTYLLAYKLGCKGVTIYRDGSRES 562


>gi|2981928|pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981930|pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981932|pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC +I L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|2914260|pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914262|pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914264|pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
          Length = 761

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|82777643|ref|YP_403992.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae Sd197]
 gi|309785073|ref|ZP_07679706.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81241791|gb|ABB62501.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           dysenteriae Sd197]
 gi|308927443|gb|EFP72917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 761

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 346/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V +L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPELYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|318606421|emb|CBY27919.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 761

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 210/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|289526572|pdb|2X5B|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526573|pdb|2X5B|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526574|pdb|2X5B|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662315|pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662316|pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662317|pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|285803174|pdb|2X33|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803175|pdb|2X33|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803176|pdb|2X33|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662308|pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662309|pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662310|pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 190/673 (28%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|326391806|ref|ZP_08213324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992164|gb|EGD50638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 770

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 184/625 (29%), Positives = 287/625 (45%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A       K  + E     FY+++ +  F
Sbjct: 9   KVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFYDMMVALDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL       +     DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAVE+ +E M FI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMGFIDETSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M   +   VN        +R  + E ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + +E + + +
Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYELGCKGVTIYRDGSRES 562


>gi|2981919|pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981921|pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981923|pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC +I L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|332702239|ref|ZP_08422327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552388|gb|EGJ49432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 744

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 180/619 (29%), Positives = 303/619 (48%), Gaps = 85/619 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351
           +L  RY     +G+ +E  Q  F RVA  +A +E +  K        A EFY+L++SF F
Sbjct: 22  VLRKRYLRKGPDGNPVEDVQGMFWRVASAIASEEVKYAKSSFDVDRLAREFYSLMTSFRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF ++++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLMNAGTELGQLAACFVLPVGDSMEDIFASVRDAALIHKSGGGTGFSFSRLRREG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+K+ N     V QGG R+GA    L   H D+ +F+  ++  G+
Sbjct: 142 ARVGSTGGVASGPVSFMKIFNTATEQVKQGGTRRGANMGILRVDHPDILKFISCKEREGE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V  +  ++L +P    +   L  +E              
Sbjct: 202 ----LNNFNISVALTEKFMQAVEADEEYSLIAPQNGQEDGRLRARE-------------- 243

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               VF       L RK     +E+G P I F D  N  +P    G + S+N C E  L 
Sbjct: 244 ----VF-----ALLVRKA----WESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL   +   +++  D+D+       AVR LDNVID + + ++K  +
Sbjct: 291 PYE----ACNLGSINLATIYDPNSDDGIDWDEFKRITHLAVRFLDNVIDASRYPLDKITE 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +   +R IGLGLMG+   L  L +PY S EA+ + ++ M+F+   + +AS  LA+ERGA+
Sbjct: 347 TVGRNRKIGLGLMGWADLLFQLRVPYNSQEALILGEKVMKFLQAESKAASKILAEERGAF 406

Query: 709 SSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +++  S + D+ V P                                    RN+    IA
Sbjct: 407 AAYDESTYADKKVGP-----------------------------------YRNATTTTIA 431

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I G S  I+P +   + ++ M G+  V  N +    L++ + + +A++ D+  
Sbjct: 432 PTGTLSIIAGCSSGIEPLFALSFTRNVMDGEKLVEANPYFEQALRETESYSKALMEDVA- 490

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
             GSI ++E +PDD++++  TA +++P + ++  +  QK+ D A S  + L    S + +
Sbjct: 491 KKGSIAHMELLPDDIRRVFVTAHDVEPTYHLKMQAAFQKFTDNAVSKTVNLPSSASEEDI 550

Query: 886 DFIYRQAWLMGLKTTYYLR 904
             IY  A+ MG K     R
Sbjct: 551 REIYWMAYEMGCKGVTVYR 569


>gi|260598670|ref|YP_003211241.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260217847|emb|CBA32363.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 774

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 190/678 (28%), Positives = 303/678 (44%), Gaps = 47/678 (6%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P+   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+ 
Sbjct: 13  PMNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIH 72

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             +I ++  LI ++ P+Y  + AR  +  LR++       +P K   H           +
Sbjct: 73  ETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVK 121

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            +E G     L +   + +   +   + + RD  F Y  ++ L  +Y +   + G   E 
Sbjct: 122 MVELGKYDHHLLQDYSEEEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYES 181

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
            Q  ++ VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC
Sbjct: 182 AQFLYLLVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSC 238

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +R LG+ I G      G IPF K  
Sbjct: 239 VLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 298

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +
Sbjct: 299 QTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQ 358

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+  
Sbjct: 359 RLLKGEDITLFSPSDVPGLYDAFFANQDEFERLYTTYEQD----ESIRKQRIKASELFSL 414

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           M+     TG  +I   D CN  SP    V  V  SNLC EI L        N  S E A+
Sbjct: 415 MMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDDSGEIAL 474

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 475 CTLSAFNLGAIDS-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 529

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 530 VINYAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKG 589

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A +      WD L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 590 ILPIDT---YKKDLDAIA-SEPLHYDWDALRESIKTHGLRNSTLSALMPSETSSQISNAT 645

Query: 780 QSIDPSYQNLYVKSNMSG 797
             I+P   ++ +K++  G
Sbjct: 646 NGIEPPRGHISIKASKDG 663


>gi|78355160|ref|YP_386609.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217565|gb|ABB36914.1| ribonucleoside-diphosphate reductase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 745

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 170/612 (27%), Positives = 288/612 (47%), Gaps = 91/612 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351
           +L  RY+    +G  +E     F RVA  +A +E +        ++ A EFY+L++S+ F
Sbjct: 19  VLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKF 78

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 79  LPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAA 138

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 139 SRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGE 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQAD 530
                ++ N +  + + FMK V +   + L +P        L  +E FEI          
Sbjct: 199 ----FNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGEAKGTLNAREVFEI---------- 244

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                             ++   +E+G P I F D  N  +P    G + S+N C E  L
Sbjct: 245 ------------------LVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                    CNLGS+NL   +        +  D+ +L   IR +VR LDNVID + + ++
Sbjct: 287 LPYE----ACNLGSVNLAGLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDASRYPLD 342

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  ++ H +R IGLG+MG+   L  L IPY S +AV++A   MEFI     +AS +LA+E
Sbjct: 343 RITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLAKE 402

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNC 763
           RG + ++  S++ Q                                   + +G  RN+  
Sbjct: 403 RGPFPAYAESVFGQ-----------------------------------RDLGPYRNATI 427

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMIS 822
             IAPT T++ + G S  ++P +   + +  M G+  V VN +    LK    + E ++ 
Sbjct: 428 TTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQCYSEKLME 487

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            +    GS+  +E +P  ++ +  TA +I+P+W ++  +  Q++ D A S  + L  P+ 
Sbjct: 488 AVT-QKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNL--PNS 544

Query: 883 KKLDFIYRQAWL 894
             +D I    W+
Sbjct: 545 ATIDDIRSIYWM 556


>gi|326784254|ref|YP_004324792.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003485|gb|ADO97881.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 765

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 196/692 (28%), Positives = 319/692 (46%), Gaps = 46/692 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L ++  DG     N  ++  +VE AC+GL  VS   V   +    +DG+  +D++  LI
Sbjct: 7   ELHVVKRDGEKEVMNLDKVHAMVEHACNGLAGVSESHVEMNSNLQFFDGIKTADIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR++V             H  +C         + +
Sbjct: 67  RSANDLISLEAPNYQFVAARLLLFGLRKQVYNGHPDGHPPLLEHVKKC---------VGK 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           GV    +     D +   L + + ++RD+ F Y G++ + D+Y +     G   E PQ  
Sbjct: 118 GVYDGGILSMYTDEEWEKLNSYIDHDRDYLFTYAGIRQVTDKYLVQDRSTGEIYETPQFM 177

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           +M VA  L   +    + +   ++Y+ +S       TP +  +G R P  Q +SC L  V
Sbjct: 178 YMMVAATLFQNDDRFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVDV 235

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T  
Sbjct: 236 DDTLDSIFSSDMAIGYYVSQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVR 295

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
              Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R   N
Sbjct: 296 CCTQNGIRGGSATVHFPIWHAEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIAN 355

Query: 497 AGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  +LFSP +V  L+D +G  +F+  Y +    A++ ++   + ++A  L+  +L    E
Sbjct: 356 SVISLFSPHDVPGLYDAFGTDDFDELYCD----AEQNDLIPRKTVNAQKLFLDLLKERAE 411

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSINLL 608
           TG  +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+ 
Sbjct: 412 TGRMYIMNIDHCNTHSSFK--DKVNMSNLCQEITLPTDPIQHIDGGGEIALCILSAINV- 468

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   + D+L      AVR LD +ID   + +  AK+S    R++G+G +G    L 
Sbjct: 469 ----GKLKNLDELDELCELAVRGLDALIDYQHYPVAAAKQSTINRRSLGIGYIGLAHYLA 524

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+   
Sbjct: 525 KHGANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYK- 583

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             EV DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    
Sbjct: 584 -KEV-DEIVPNDLS-CDWEYLRGRITEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDY 640

Query: 789 LYVKSNMSGDF-TVVNSFLVNELKQRD--LWD 817
           L VK +  G    +V S+  N LK     LWD
Sbjct: 641 LSVKKSKKGPLKQIVPSY--NSLKNNYTLLWD 670


>gi|170767383|ref|ZP_02901836.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170123717|gb|EDS92648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 761

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 219/801 (27%), Positives = 343/801 (42%), Gaps = 109/801 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EEITLFSPSDVPGLYDAFFADQEEFERLYTQYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P     YV    S D                                 G + ++  
Sbjct: 633 NGIEPP--RGYVSIKASKD---------------------------------GILRQVVP 657

Query: 840 DLKKIHATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDE---PSGK----KL 885
           D + +H  A+E+  +W        ++     QK+IDQ+ S N   D    PSGK    +L
Sbjct: 658 DYEPLH-DAYEL--LWKMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQL 714

Query: 886 DFIYRQAWLMGLKTTYYLRSR 906
                 A+  G+KT YY  +R
Sbjct: 715 LKDLLTAYKFGVKTLYYQNTR 735


>gi|320175006|gb|EFW50121.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
          Length = 761

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  ++   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLIMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|13540923|ref|NP_110611.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           volcanium GSS1]
          Length = 767

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 172/571 (30%), Positives = 276/571 (48%), Gaps = 73/571 (12%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG 
Sbjct: 220 KFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGT 279

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T G + G + F+K+ + T   + QGGKR+GA    L   H D+ 
Sbjct: 280 GFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIM 339

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+ L K++  + +   + N +  + D F +++  +    L +P                
Sbjct: 340 EFV-LSKDS--ENKVLSNFNISVGVTDEFFEKLDNDDYVDLINPRTK------------- 383

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV ++I A  LW  ++   ++T  P + F D  N ++P ++VG + 
Sbjct: 384 --------------KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIE 429

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C E  L         CNLGSINL  +      DYD+L  T+  A R LD+VID N 
Sbjct: 430 STNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANK 485

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ KK     R IGLG+MGF   L  L +PY S EA+EIA++ M FI+  +  AS  
Sbjct: 486 FPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQH 545

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG + ++ GS W++                                   + I MRN
Sbjct: 546 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 570

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           S    IAPT TI+ I G S SI+P +   +V+  ++G +   VN     + +   L+ E 
Sbjct: 571 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEE 630

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           ++  +    G++ NIE I +++KKI  TA E+DP W +   +  Q++ D   S  + +  
Sbjct: 631 LMRKVA-ETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKS 688

Query: 880 PSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909
            + ++ +   YR A  +  K     R +S T
Sbjct: 689 DATREDIAKAYRMAKDLHCKGITVYRDKSKT 719



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+  G+ R        + L ++ V RL    + 
Sbjct: 4   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKN-GSMRD------AETLADKVVERLKNIERP 56

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129
                +E IQD VE  LM S         + + Y+LYRE+R  +R
Sbjct: 57  T----VEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIR 97


>gi|14324305|dbj|BAB59233.1| ribonucleotide reductase [Thermoplasma volcanium GSS1]
          Length = 769

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 172/571 (30%), Positives = 276/571 (48%), Gaps = 73/571 (12%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG 
Sbjct: 222 KFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGT 281

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T G + G + F+K+ + T   + QGGKR+GA    L   H D+ 
Sbjct: 282 GFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIM 341

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+ L K++  + +   + N +  + D F +++  +    L +P                
Sbjct: 342 EFV-LSKDS--ENKVLSNFNISVGVTDEFFEKLDNDDYVDLINPRTK------------- 385

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV ++I A  LW  ++   ++T  P + F D  N ++P ++VG + 
Sbjct: 386 --------------KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIE 431

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C E  L         CNLGSINL  +      DYD+L  T+  A R LD+VID N 
Sbjct: 432 STNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANK 487

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ KK     R IGLG+MGF   L  L +PY S EA+EIA++ M FI+  +  AS  
Sbjct: 488 FPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQH 547

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG + ++ GS W++                                   + I MRN
Sbjct: 548 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 572

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           S    IAPT TI+ I G S SI+P +   +V+  ++G +   VN     + +   L+ E 
Sbjct: 573 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEE 632

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           ++  +    G++ NIE I +++KKI  TA E+DP W +   +  Q++ D   S  + +  
Sbjct: 633 LMRKVA-ETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKS 690

Query: 880 PSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909
            + ++ +   YR A  +  K     R +S T
Sbjct: 691 DATREDIAKAYRMAKDLHCKGITVYRDKSKT 721



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+  G+ R        + L ++ V RL    + 
Sbjct: 6   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKN-GSMRD------AETLADKVVERLKNIERP 58

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129
                +E IQD VE  LM S         + + Y+LYRE+R  +R
Sbjct: 59  T----VEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIR 99


>gi|319789960|ref|YP_004151593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
 gi|317114462|gb|ADU96952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 289/632 (45%), Gaps = 101/632 (15%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351
           ++IL  RY         E PQ  F RVA  ++  E      ++  +   EF  ++ +  F
Sbjct: 9   IEILKARYL-----RPGETPQELFERVARAVSEAELLYGPASQAARWEEEFLKVMENLEF 63

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF ++   A + K  GG G  ++ +R  G
Sbjct: 64  LPNSPTLMNAGTPLGQLAACFVLPVEDSIEEIFASVSLMAKIQKTGGGTGFSFSRLRPKG 123

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  TNGK+ G + F+KV N    A+ QGGKR+GA    L   H DV+EF+  +     
Sbjct: 124 DTVKSTNGKASGPVSFMKVFNCATDAIKQGGKRRGANMGVLSVNHPDVKEFITCK----T 179

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D +   + N +    D F ++  +     L +P +                         
Sbjct: 180 DGKSFQNFNISVACTDDFFQKALKGGEIELINPRDG------------------------ 215

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV+ ++ A  L   +    ++TG P I + D  N  +P   +G + ++N C E+ L 
Sbjct: 216 ---KVWSRVKADELLDLIAESAWKTGDPGILYIDEINRHNPTPALGRIEATNPCGEVPLL 272

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              E    CNLGSINL       + +++KL   ++ AVR LD VID+N +   + +K   
Sbjct: 273 PYEE----CNLGSINLSKIVEKGRINWEKLERLVKVAVRFLDCVIDVNRYPHPEIEKMAK 328

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MG+   L  L IPY S EAVE+A+  M FI+  A  AS ELA+++G++ + 
Sbjct: 329 GNRKIGLGVMGWAELLIELEIPYDSEEAVELAERLMGFINRKAFEASAELAKQKGSFPNI 388

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S++                                   R KT  +RN+   +IAPT T
Sbjct: 389 DKSVY-----------------------------------RGKT--LRNATRTSIAPTGT 411

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I G + SI+P +   YVK  + G     +   L+ ++K+  L     I       G+
Sbjct: 412 ISMIAGTTPSIEPLFAVGYVKRVLGGRRVPFIEPLLMKKVKELSLQQLKEI----LESGT 467

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDF 887
           +   E IP+ +K+I  TA EI P W ++  +  QK  D A S  + L +   P   K  F
Sbjct: 468 LQRAEGIPEKIKRIFKTAHEIAPEWHLKIQAAFQKHTDNAVSKTVNLPKSATPEDIKEIF 527

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           I          T Y L+ +  T   + + +GV
Sbjct: 528 I----------TGYKLKLKGVTVFREGSKEGV 549


>gi|326783255|ref|YP_004323799.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005202|gb|ADO99591.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 770

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 188/671 (28%), Positives = 305/671 (45%), Gaps = 44/671 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  DG     N  ++ ++VE AC+GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIQVIKRDGVSEPLNLDKIHVMVEHACNGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V            H        E+  R +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFSLRKAVYNG---------HPNGHPPLREHVERCVSR 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
            V    +     D +   L + + ++RD+ F Y G++ + D+Y +    +G   E PQ  
Sbjct: 118 SVYDASILSKYTDEEWEKLNSFMDHDRDYLFTYAGVRQVVDKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           +M +A  L  ++ +K  R     ++Y+ +S       TP +  +G R P  Q +SC L  
Sbjct: 178 YMMIAATL-FQDDDKFYRLEYVKKYYDAISKHRINIPTPVM--AGVRTPLRQFASCVLVD 234

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L  IF +            G+G +   +RG+   I G   +  GV+PFLK    T 
Sbjct: 235 VDDTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINTKIRGGEVQHTGVVPFLKKFESTV 294

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
               Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  LF +R   
Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIA 354

Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           N   +LFSP +V  L+D +G + F+  Y  YE      E    + I A  L+  +L    
Sbjct: 355 NGEISLFSPHDVPGLYDAFGTDSFDDLYVRYESD----EFTPRKTIGAQELFLSLLKERA 410

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606
           ETG  ++   D CN  S  +    V+ SNLC EITL        +    E A+C L +IN
Sbjct: 411 ETGRLYLMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPISHIDDPKGEIALCILSAIN 468

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +    N     D+L      AVR LD +ID   + +E AK+S    R++G+G +G    
Sbjct: 469 -VGKLKN----LDELDELCDLAVRGLDALIDYQEYPVEAAKQSTTNRRSLGVGYIGLAHY 523

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y + +A ++  +  E   +  ++AS  LA E+G    F  + +  G+ PID+ 
Sbjct: 524 LAKHGANYDTYKAQDLVHKLSERFQYALLTASNRLAMEKGPCGYFGKTKYADGILPIDT- 582

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                  DE+  N   +  W+ L+ R+K  G+RNS   A  P+ + + +   +  I+P  
Sbjct: 583 --YKNDVDEIVPNDL-QCDWEFLRGRIKEYGLRNSTLSAQMPSESSSVVSNATNGIEPPR 639

Query: 787 QNLYVKSNMSG 797
             L +K +  G
Sbjct: 640 AYLSIKKSKKG 650


>gi|168749637|ref|ZP_02774659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168754981|ref|ZP_02779988.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168767854|ref|ZP_02792861.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168773048|ref|ZP_02798055.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168780083|ref|ZP_02805090.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168798398|ref|ZP_02823405.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195935608|ref|ZP_03080990.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208806525|ref|ZP_03248862.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814448|ref|ZP_03255777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820413|ref|ZP_03260733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398582|ref|YP_002271640.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|254794125|ref|YP_003078962.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|187771171|gb|EDU35015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016054|gb|EDU54176.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002029|gb|EDU71015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357729|gb|EDU76148.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362988|gb|EDU81407.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189378969|gb|EDU97385.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726326|gb|EDZ75927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208735725|gb|EDZ84412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740536|gb|EDZ88218.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159982|gb|ACI37415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209765532|gb|ACI81078.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765536|gb|ACI81080.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|254593525|gb|ACT72886.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|326339581|gb|EGD63392.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKHFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|15802781|ref|NP_288808.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832371|ref|NP_311144.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|26248622|ref|NP_754662.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|91211527|ref|YP_541513.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|110642442|ref|YP_670172.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|117624428|ref|YP_853341.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|157156706|ref|YP_001463583.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|168761334|ref|ZP_02786341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168787140|ref|ZP_02812147.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|170682262|ref|YP_001744430.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|191170225|ref|ZP_03031779.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|217327968|ref|ZP_03444051.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218559151|ref|YP_002392064.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|218690397|ref|YP_002398609.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218695840|ref|YP_002403507.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|218700705|ref|YP_002408334.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218705764|ref|YP_002413283.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|227887292|ref|ZP_04005097.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|237704710|ref|ZP_04535191.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|261223313|ref|ZP_05937594.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259137|ref|ZP_05951670.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291283478|ref|YP_003500296.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|293405701|ref|ZP_06649693.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|293410598|ref|ZP_06654174.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|293446577|ref|ZP_06662999.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|298381382|ref|ZP_06990981.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300818166|ref|ZP_07098378.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300822683|ref|ZP_07102821.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300897698|ref|ZP_07116096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300918604|ref|ZP_07135192.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300936791|ref|ZP_07151684.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300981253|ref|ZP_07175430.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300983267|ref|ZP_07176506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301022394|ref|ZP_07186278.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|301048986|ref|ZP_07195973.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|306814653|ref|ZP_07448815.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|312967535|ref|ZP_07781750.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|331647889|ref|ZP_08348981.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331658315|ref|ZP_08359277.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331663741|ref|ZP_08364651.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331678185|ref|ZP_08378860.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331683910|ref|ZP_08384506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|12516569|gb|AAG57363.1|AE005455_4 ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli O157:H7 str. EDL933]
 gi|26109027|gb|AAN81230.1|AE016763_189 Ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli CFT073]
 gi|13362586|dbj|BAB36540.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|91073101|gb|ABE07982.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli UTI89]
 gi|110344034|gb|ABG70271.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 536]
 gi|115513552|gb|ABJ01627.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli APEC O1]
 gi|157078736|gb|ABV18444.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
 gi|170519980|gb|ACB18158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
 gi|189368234|gb|EDU86650.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372942|gb|EDU91358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|190909741|gb|EDV69326.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|209765528|gb|ACI81076.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765530|gb|ACI81077.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765534|gb|ACI81079.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|217320335|gb|EEC28760.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218352572|emb|CAU98351.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli 55989]
 gi|218365920|emb|CAR03662.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli S88]
 gi|218370691|emb|CAR18502.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI39]
 gi|218427961|emb|CAR08881.2| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ED1a]
 gi|218432861|emb|CAR13755.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli UMN026]
 gi|222033995|emb|CAP76736.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|226901076|gb|EEH87335.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|227835642|gb|EEJ46108.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|281179325|dbj|BAI55655.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE15]
 gi|284922225|emb|CBG35307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 042]
 gi|290763351|gb|ADD57312.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323407|gb|EFE62835.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|291427909|gb|EFF00936.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|291471066|gb|EFF13550.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|294492897|gb|ADE91653.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|298278824|gb|EFI20338.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300299178|gb|EFJ55563.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300307617|gb|EFJ62137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300358576|gb|EFJ74446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300397544|gb|EFJ81082.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300408601|gb|EFJ92139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|300414256|gb|EFJ97566.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300458121|gb|EFK21614.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300524883|gb|EFK45952.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300529310|gb|EFK50372.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|305852047|gb|EFM52499.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|307554300|gb|ADN47075.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ABU 83972]
 gi|312287732|gb|EFR15637.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|312946855|gb|ADR27682.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285848|gb|EFU45288.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
 gi|315292182|gb|EFU51534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
 gi|315298060|gb|EFU57329.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
 gi|320192145|gb|EFW66790.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320196103|gb|EFW70727.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli WV_060327]
 gi|320641060|gb|EFX10539.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
 gi|320646449|gb|EFX15368.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651546|gb|EFX19926.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320657298|gb|EFX25100.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663125|gb|EFX30438.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667817|gb|EFX34725.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323184147|gb|EFZ69524.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
 gi|323188038|gb|EFZ73333.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
 gi|323945043|gb|EGB41108.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323956003|gb|EGB51756.1| ribonucleotide reductase [Escherichia coli H263]
 gi|323967676|gb|EGB63088.1| ribonucleotide reductase [Escherichia coli M863]
 gi|323977568|gb|EGB72654.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|324006610|gb|EGB75829.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
 gi|324013120|gb|EGB82339.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
 gi|325496726|gb|EGC94585.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
 gi|326344043|gb|EGD67804.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|327252503|gb|EGE64162.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
 gi|330912065|gb|EGH40575.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit
           [Escherichia coli AA86]
 gi|331043613|gb|EGI15751.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331056563|gb|EGI28572.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331059540|gb|EGI31517.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331074645|gb|EGI45965.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331078862|gb|EGI50064.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|258624429|ref|ZP_05719376.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
 gi|258583276|gb|EEW08078.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
          Length = 760

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|300903616|ref|ZP_07121534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301303306|ref|ZP_07209431.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300404352|gb|EFJ87890.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300841480|gb|EFK69240.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315255169|gb|EFU35137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|324112771|gb|EGC06747.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|110806204|ref|YP_689724.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110615752|gb|ABF04419.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 5 str. 8401]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 345/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDVSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|24113614|ref|NP_708124.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30063668|ref|NP_837839.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|24052671|gb|AAN43831.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 301]
 gi|30041923|gb|AAP17649.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 2457T]
 gi|281601679|gb|ADA74663.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313651059|gb|EFS15458.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332754882|gb|EGJ85247.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|332755285|gb|EGJ85649.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332756581|gb|EGJ86932.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332766055|gb|EGJ96265.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333001381|gb|EGK20949.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
 gi|333002008|gb|EGK21574.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
 gi|333002602|gb|EGK22162.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333016363|gb|EGK35694.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
 gi|333016744|gb|EGK36072.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|156933157|ref|YP_001437073.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531411|gb|ABU76237.1| hypothetical protein ESA_00967 [Cronobacter sakazakii ATCC BAA-894]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 211/792 (26%), Positives = 346/792 (43%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L +   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTRYEQD----ESIRKQRIKASELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIES-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-SEPLHYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ +K++  G   ++   + +  + +D ++  ++ ++  +DG               
Sbjct: 638 PRGHISIKASKDG---ILRQVVPDYEQLKDQYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+ +G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLGV 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|332162348|ref|YP_004298925.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666578|gb|ADZ43222.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864219|emb|CBX74277.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Yersinia
           enterocolitica W22703]
          Length = 761

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 209/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|294637128|ref|ZP_06715437.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089662|gb|EFE22223.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 760

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 220/795 (27%), Positives = 342/795 (43%), Gaps = 91/795 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H           R +E G
Sbjct: 65  AAADLISRETPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDH---------VVRLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDFSRDEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSHYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    RKI AV L+  M+   
Sbjct: 351 GEITLFSPSDVPGLYDAFFADQNEFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC E+ L        N  S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEVALPTKPLEDVNDESGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  D ++LA+    AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHQLAREQGACPWFNETRYAQGILPID 581

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L A   + L  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 582 NYKKDLDAICAEPLHYD------WETLRADIVRDGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + +K++  G    VV  +   +     LW       L  +DG            
Sbjct: 636 EPPRGYISIKASKDGILRQVVPEYERLQEAYELLW------SLPNNDG------------ 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWL 894
                          ++     QK+IDQA S N   D    PSG    K+L      A+ 
Sbjct: 678 --------------YLQLVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSAT 909
           +G+KT YY  +R   
Sbjct: 724 LGVKTLYYQNTRDGA 738


>gi|2981911|pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981913|pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981915|pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC  I L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|331673747|ref|ZP_08374510.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331069020|gb|EGI40412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|306827910|ref|ZP_07461177.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304429829|gb|EFM32871.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 726

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 212/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWKALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S  S          TEC+ C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPEASDEST---------TECQSC 724


>gi|82544521|ref|YP_408468.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81245932|gb|ABB66640.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           boydii Sb227]
 gi|320184865|gb|EFW59653.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
 gi|332094119|gb|EGI99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 212/791 (26%), Positives = 344/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+G    F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +     D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|116754614|ref|YP_843732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
 gi|116666065|gb|ABK15092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
          Length = 688

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 180/635 (28%), Positives = 289/635 (45%), Gaps = 90/635 (14%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           +A+DLK   +       +++L  RY      G+ +E P   F RVA  ++  E   E  A
Sbjct: 114 VADDLKLSVN------AIEVLKKRYLKRDEFGNVVETPGEMFERVASAVSAVERRYEGDA 167

Query: 340 ----VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
                +F +++ S  F+ ++PTL N+G    QLS+CF+  V D + GIF AL+  A++ +
Sbjct: 168 DDARKKFLSMMRSLSFLPNSPTLMNAGLPLGQLSACFVVPVEDSIAGIFDALKYMALIHQ 227

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G  ++ +R  G  +  T G + G + F+++ +     + QGG+R+GA    L   
Sbjct: 228 SGGGTGFSFSRLRPKGDVVRSTGGIASGPVSFMRIFDAATDVIKQGGRRRGANMGILRVD 287

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+  +   G D     + N +  I + FM++  ++    L +P       ++  
Sbjct: 288 HPDITEFIACKDRGGMD-----NFNISVAITEEFMRQCERDGSVELINPRTGEATGEMSA 342

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           ++  +    Y                    WR+        G P + F D  N   P   
Sbjct: 343 RDLMVMMATYA-------------------WRR--------GDPGVVFIDRINALHPVP- 374

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G++ ++N C E  L         CNLGS+NL       +  +D+L  T+R AVR LD+V
Sbjct: 375 -GIIEATNPCGEQPLLPFES----CNLGSVNLSRMVERGEISWDRLEETVRLAVRFLDDV 429

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N   +++ + +    R IGLG+MGF   L  L + YAS +A+ IA+E M FI+  A 
Sbjct: 430 IDANRFPLKQIEDATLRTRKIGLGVMGFAEMLIQLGVSYASQDALRIAEELMAFITKTAR 489

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S  L +ERG++  F+ S   +                           WD        
Sbjct: 490 EESCALGRERGSFPLFEESSLKK---------------------------WD-------- 514

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRD 814
             MRN+    IAPT TI+ I G S  I+P +   +V+  + G   + +S L   +  +R 
Sbjct: 515 -AMRNATVTTIAPTGTISIIAGTSSGIEPLFAVSFVRHVLEGARLIESSPLFERMASERG 573

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +   A+ +++    GSI  I  IPDD+K++  TA +I P   +   +  QK  D A S  
Sbjct: 574 IMTPALRAEVARR-GSIQEIPGIPDDIKELFLTALDISPEQHVRIQAAFQKHTDNAVSKT 632

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + L E  S   +  +YR A+ +G K  T Y   SR
Sbjct: 633 VNLPEKASVSDVIKVYRLAYELGCKGITVYRYGSR 667



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 16/109 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ KR+G +  FDPS+ISRAI KAF A+    E      + RV D++       +     
Sbjct: 15  RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEKTPVELAGRVVDVVDERFRDEIP---- 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                    +ED+QD VE  L+ +G+ ++ + Y+LYR+ RS++R A+ +
Sbjct: 71  --------SVEDVQDIVEEVLIDAGYAQVAKAYILYRQRRSEIREAKHY 111


>gi|20808702|ref|NP_623873.1| ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517341|gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 691

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 272/556 (48%), Gaps = 65/556 (11%)

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP- 377
            F RVA  +A  E E+E     FY ++S + F+     L  +GT R     +CF+  V  
Sbjct: 1   MFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIPVEA 56

Query: 378 -------DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                  D    I   + +   +    GG+G +W+ +R  GA++ G  G S G + ++  
Sbjct: 57  NDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLA 116

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K    D  +    N +  + D FM
Sbjct: 117 ANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK----DLTKMQQANLSVAVSDAFM 172

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V Q+  W L  PD     H  Y  E++   +  E +A      V+++I A  LW K++
Sbjct: 173 EAVAQDKMWKLEFPDTS---HPNYDAEWK--GDLNEWKAKGYPTVVYKEIPARELWNKIV 227

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T  +E+  P + F +  N  S   ++  + S+N C E+ L    E   VCNLG+INL+A 
Sbjct: 228 TAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGELGL----EPYGVCNLGAINLVAF 283

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N + ++++L  T++ AVR LDNV+D+  + + + K+     R +GLGLMG   AL L+
Sbjct: 284 VENGKINFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILM 343

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           ++ Y S E+++  +E +  I   A  ASVELA+E+G +  F    + +G F         
Sbjct: 344 NLRYGSEESLKATEEIVRRIRDAAYRASVELAKEKGPFPEFVADKYLKGQF--------- 394

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                       RLP D ++  +   G+RN+  +  APT T + + GVS  I+P++   Y
Sbjct: 395 ----------IQRLPKD-IRDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEY 443

Query: 791 VKSNMSGDFTV----------VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP-- 838
           V+ + +G  TV          V++  V   +   +  +A++   KY D SI     +P  
Sbjct: 444 VRKDRTGTHTVKHWLADYPAFVSAHEVTPEEHVKM--QAVLQ--KYIDSSISKTINLPRT 499

Query: 839 ---DDLKKIHATAFEI 851
              DD+  I+  A+E+
Sbjct: 500 ATVDDIDNIYRLAYEL 515


>gi|262165507|ref|ZP_06033244.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
 gi|262025223|gb|EEY43891.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
          Length = 760

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFASGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|59711809|ref|YP_204585.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio fischeri
           ES114]
 gi|59479910|gb|AAW85697.1| ribonucleoside diphosphate reductase 1, alpha subunit [Vibrio
           fischeri ES114]
          Length = 758

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 215/796 (27%), Positives = 341/796 (42%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+   +I
Sbjct: 4   QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E  P+Y  + AR  +  LR++       +P    +H +           IE 
Sbjct: 64  KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQF--EPPTLFNHVLNL---------IEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +   +   + + RD  F Y  ++ L  +YF+   + G+  E  Q  
Sbjct: 113 GKYDKHIVEDYTQEEFALMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKDTRLDYIKRFYDATSQFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 DDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552
              +LFSP +V  L+D +     EFE  YE YE+     +  + R+ + A+ L+  ++  
Sbjct: 351 GNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQ-----DTSIKRETVKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A          +L      AVR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS       +D  A+ N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DSYK-----KDIDAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGFVSVKASKDGILKQVVPDFANLKNNYELLW------NIGSNDG------------ 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWL 894
                          ++     QK++DQA S N   D   +P+GK  +  + +    A+ 
Sbjct: 678 --------------YLQLVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
           +GLKT YY  +R   S
Sbjct: 724 LGLKTLYYHNTRDGAS 739


>gi|218548312|ref|YP_002382103.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355853|emb|CAQ88466.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEQLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|57234550|ref|YP_181365.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57224998|gb|AAW40055.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 599

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 308/648 (47%), Gaps = 97/648 (14%)

Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFHF 351
           ++L  RY     NG  IE P+  F RVA  +A  E +    A       EFY  +S   F
Sbjct: 22  RVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEFYQAMSRLEF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSNLRPAG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +      + G +  + + +  A  V QGG R+G   A L+  H D+ +F+  +   GD
Sbjct: 142 DKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKFISCK---GD 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               T +   +  +   FM +V     + + +P                           
Sbjct: 199 PNALT-NFYISVVVTREFMTKVRSGEDYDIINPHT------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V ++++A  ++  ++   ++TG P + F D  N  +P   +G +   + C E TL 
Sbjct: 233 GE--VVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGEQTLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N     + +
Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNRFPTPEIE 346

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS +LA+ RG+
Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEARGS 406

Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           + +++GS++D  G  P                                   MRN+ C +I
Sbjct: 407 FPAYEGSIYDVPGGRP-----------------------------------MRNATCTSI 431

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821
           APT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R+ +      E ++
Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSKELFEKLV 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
           S    HD     +E +PD LK++  TA  I P W I   +  QK+ D A S  + +  E 
Sbjct: 492 SSNHLHD-----MECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFSHEA 546

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924
           + + +  ++  A+  GLK  T Y   SR+A  +   +S +K VD  L+
Sbjct: 547 TREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594


>gi|15674554|ref|NP_268728.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910162|ref|YP_281712.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13621660|gb|AAK33449.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes M1 GAS]
 gi|71852944|gb|AAZ50967.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 726

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYSDGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S  +          TEC+ C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724


>gi|94989857|ref|YP_597957.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94543365|gb|ABF33413.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 726

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/780 (27%), Positives = 351/780 (45%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKHYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+  +YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRVYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S           + TEC+ C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECQSC 724


>gi|253687497|ref|YP_003016687.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754075|gb|ACT12151.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 212/793 (26%), Positives = 344/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I 
Sbjct: 5   LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD  A+ N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G   ++   +      +D ++  ++ ++  +DG              
Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L      A+  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGKVPMKQLLKDLVTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|258620210|ref|ZP_05715249.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|262171720|ref|ZP_06039398.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
 gi|258587568|gb|EEW12278.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|261892796|gb|EEY38782.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
          Length = 760

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|16765604|ref|NP_461219.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992611|ref|ZP_02573708.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|585857|sp|P37426|RIR1_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|295896|emb|CAA51452.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420816|gb|AAL21178.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205329161|gb|EDZ15925.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261247485|emb|CBG25312.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994367|gb|ACY89252.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158835|emb|CBW18348.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913267|dbj|BAJ37241.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223023|gb|EFX48094.1| Ribonucleotide reductase of class Ia aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130607|gb|ADX18037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989210|gb|AEF08193.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|168237292|ref|ZP_02662350.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197289598|gb|EDY28961.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 761

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|331653668|ref|ZP_08354669.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331048517|gb|EGI20593.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 761

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 213/796 (26%), Positives = 345/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|108805660|ref|YP_645597.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766903|gb|ABG05785.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrobacter xylanophilus DSM 9941]
          Length = 747

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 176/624 (28%), Positives = 287/624 (45%), Gaps = 86/624 (13%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----KEKRAV------EFYNLL 346
           L +L  RY    + G  +E P   F RVA  +A  E +    +E RA+       F  ++
Sbjct: 20  LAVLRKRYLKKNDRGEPVERPVDMFRRVAGNIAEAELKFRDGEEGRALYEEYYGRFLQMM 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
            S  FM ++PTL N+G    QLS+CF+  V D + GI+  L+  A++ K  GG G  ++ 
Sbjct: 80  LSRRFMPNSPTLMNAGRELQQLSACFVLPVEDSIDGIYDTLKHQAIIHKSGGGTGFAFSR 139

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R     +  T G S G + F+ + + +   + QGG R+GA    L   H D+EEF+  +
Sbjct: 140 LRPKNDIVQSTMGVSSGPVSFMAIYDASTDKIKQGGTRRGANMGILRVDHPDIEEFVTCK 199

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
               +D  +  + N +  I D FM+ V ++  + L +P   +                  
Sbjct: 200 ----NDNDQITNFNISVAITDAFMEAVEKDGEFELVNPRNGA------------------ 237

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V R++ A  L++K+    +  G P + F D  N  +P      + S+N C+
Sbjct: 238 ---------VTRRVRARELFKKIAYGAWLNGEPGVVFIDRINADNPTPQF-PIESTNPCS 287

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E  L         CNLGSINL   ++      D+++L  T+RTAVR LDNVI+ N + + 
Sbjct: 288 EAHLPPYDS----CNLGSINLSLFYSEEAGDVDWEELRETVRTAVRFLDNVIEQNNYPLP 343

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++ +  +R IGLG+MGF   L  + IPY S E +  A+  M FI   A  AS  LA E
Sbjct: 344 QIEEMSKGNRRIGLGVMGFADLLIKMGIPYDSEEGLAFAERVMRFIDEEAWEASRALAAE 403

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG ++ ++GS                  R E   +R                 +RN+   
Sbjct: 404 RGVFAHYEGS------------------RHEARGDR-----------------VRNATVT 428

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            IAPT TI+ I G S  I+P Y   +++     +   VN   V   ++R  + E ++  +
Sbjct: 429 TIAPTGTISLIAGCSGGIEPLYAVAFMRRQADMEMPDVNPEFVRVARERGFYSEELMKKV 488

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
               GS+  +E +P+D++++  T+ +I P W +   +  QK      S  + L +E + +
Sbjct: 489 A-EQGSVRGLEEVPEDVRRVWVTSHDISPEWHVRMQAAFQKHTSMGISKTINLPNEATVE 547

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
            ++  YR A+ +G K     R  S
Sbjct: 548 DVERAYRLAYSLGCKGIAVYRDGS 571


>gi|238913486|ref|ZP_04657323.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 761

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPIVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|56412826|ref|YP_149901.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62180850|ref|YP_217267.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|168261710|ref|ZP_02683683.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466026|ref|ZP_02699896.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817992|ref|ZP_02829992.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197361759|ref|YP_002141395.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127083|gb|AAV76589.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62128483|gb|AAX66186.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|195631245|gb|EDX49805.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197093235|emb|CAR58680.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205344941|gb|EDZ31705.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349577|gb|EDZ36208.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086714|emb|CBY96486.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715326|gb|EFZ06897.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 761

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|15641269|ref|NP_230901.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121590732|ref|ZP_01678063.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121729794|ref|ZP_01682230.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|147674951|ref|YP_001216821.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O395]
 gi|153212312|ref|ZP_01948100.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|153823599|ref|ZP_01976266.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|153827302|ref|ZP_01979969.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|153829751|ref|ZP_01982418.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|227081428|ref|YP_002809979.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|229505157|ref|ZP_04394667.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229511171|ref|ZP_04400650.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229515629|ref|ZP_04405088.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229518290|ref|ZP_04407734.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229521369|ref|ZP_04410788.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229525855|ref|ZP_04415260.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229529664|ref|ZP_04419054.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229608177|ref|YP_002878825.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           MJ-1236]
 gi|254291707|ref|ZP_04962494.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|254848380|ref|ZP_05237730.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255745653|ref|ZP_05419601.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262159071|ref|ZP_06030183.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262169429|ref|ZP_06037121.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262191405|ref|ZP_06049593.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297578848|ref|ZP_06940776.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|298498652|ref|ZP_07008459.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547413|gb|EAX57524.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121628469|gb|EAX60959.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|124116690|gb|EAY35510.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|126518878|gb|EAZ76101.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|146316834|gb|ABQ21373.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|148874785|gb|EDL72920.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|149738793|gb|EDM53135.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|150422391|gb|EDN14351.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|227009316|gb|ACP05528.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|227013173|gb|ACP09383.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|229333438|gb|EEN98924.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229339436|gb|EEO04453.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229341467|gb|EEO06470.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229345005|gb|EEO09979.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229347398|gb|EEO12358.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229351136|gb|EEO16077.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229357380|gb|EEO22297.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229370832|gb|ACQ61255.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae MJ-1236]
 gi|254844085|gb|EET22499.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255736728|gb|EET92125.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262022242|gb|EEY40951.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262029256|gb|EEY47908.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262032694|gb|EEY51244.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297536442|gb|EFH75275.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|297542985|gb|EFH79035.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|327483945|gb|AEA78352.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 217/801 (27%), Positives = 345/801 (43%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|21909839|ref|NP_664107.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28896466|ref|NP_802816.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|71903002|ref|YP_279805.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|139474320|ref|YP_001129036.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|21904025|gb|AAM78910.1| putative ribonucleoside-diphosphate reductase large chain
           [Streptococcus pyogenes MGAS315]
 gi|28811717|dbj|BAC64649.1| putative ribonucleoside diphosphate reductase, large chain
           [Streptococcus pyogenes SSI-1]
 gi|71802097|gb|AAX71450.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
 gi|134272567|emb|CAM30833.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 726

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/780 (27%), Positives = 350/780 (44%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S  +          TEC+ C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724


>gi|194444716|ref|YP_002041538.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403379|gb|ACF63601.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 761

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 211/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLSYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|309807847|ref|ZP_07701779.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809738|ref|ZP_07703592.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325913648|ref|ZP_08176010.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919792|ref|ZP_08276743.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308168949|gb|EFO71035.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169917|gb|EFO71956.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325477007|gb|EGC80157.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937139|gb|EGG33567.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 725

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 318/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y++     +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|19745565|ref|NP_606701.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19747688|gb|AAL97200.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes MGAS8232]
          Length = 726

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 208/773 (26%), Positives = 348/773 (45%), Gaps = 117/773 (15%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPDQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKQYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLD---NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD    V D+NC  ++E    +NH   A+GLG+M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANH---AVGLGVMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--- 726
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQED 535

Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  +A +  +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S
Sbjct: 536 VKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPS 595

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    + V+   S     V ++ +++            ++  Y+       ER     
Sbjct: 596 LQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYY-------ER----- 631

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900
                 A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + 
Sbjct: 632 -----GAYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASI 686

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YY+R R      +  L G +       VT P +S  +          TEC+ C
Sbjct: 687 YYVRVR------QDVLAGSEQYDEDSLVTAPGASDETT---------TECQSC 724


>gi|212635282|ref|YP_002311807.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           piezotolerans WP3]
 gi|212556766|gb|ACJ29220.1| Ribonucleoside-diphosphate reductase [Shewanella piezotolerans WP3]
          Length = 801

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 212/777 (27%), Positives = 344/777 (44%), Gaps = 85/777 (10%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++E A  GL +VS   V   ++   ++G+    +   +I ++  LI  E P+Y  +
Sbjct: 60  KIHRVIEWAAKGLTNVSVSEVELRSHLQFFEGIPTEAIHETIIKAAADLISPEAPDYQFL 119

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + IE G     + E     ++ 
Sbjct: 120 AARLAIFHLRKKAFGQF--EPPKLYDH---------VVKLIELGKYDAHILEDYSREEID 168

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK--ETEK 335
            L   + + RD  F Y  ++ L  +Y +   ++    E  Q  ++ VA  L  K  +  +
Sbjct: 169 ILGGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLYILVAACLFAKYPKETR 228

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393
            K   +FY+  S+F     TP +  +G R P  Q SSC L    D L  I          
Sbjct: 229 LKYIKDFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVKY 286

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +  
Sbjct: 287 VSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFYP 346

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH++VE  L L+ N G D  R   ++    I  L  +R+ Q    +LFSP +V  ++D 
Sbjct: 347 IWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKLMYQRMIQGGMISLFSPSDVPGMYDA 406

Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +    +EFE  Y  YE  AD    K  +++ AV L+  M+     TG  +I   D CN  
Sbjct: 407 FFEDQEEFERLYLKYE--ADESIRK--QQVKAVELFSLMMQERASTGRIYIQNVDHCNTH 462

Query: 571 SP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           SP    V  V  SNLC EI L        N    E A+C L ++NL A    N  + + L
Sbjct: 463 SPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA--IKNLEELEPL 520

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           A     AVR LDN++D   + I  A+K++   R +G+G++ F + L    + Y+   A  
Sbjct: 521 AD---LAVRALDNLLDYQDYPIISAEKASMNRRTLGIGVINFANYLAKEGVRYSDGSANS 577

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMNR 740
           I  ++ E I ++ + AS  LA+E+GA  SF  + + +G+ PID+    L ++ DE     
Sbjct: 578 ITHKTFEAIQYYLLKASNNLAKEQGACPSFHETTYSKGILPIDTYKRDLDKICDE----- 632

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              + W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + VK++  G   
Sbjct: 633 PLHMDWESLREEIKTHGLRNSTVSALMPSETSSQISNATNGIEPPRGLISVKASKDG--- 689

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                   +LKQ       ++ D   +  S   + ++P++   I                
Sbjct: 690 --------QLKQ-------VVPDFDKYQYSYELLWQMPNNDGYIQLVGL----------- 723

Query: 861 SRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSRSATS 910
              QK++DQ+ S N   D    P GK  +  + +    A+  G+KT YY  +R   S
Sbjct: 724 --MQKFVDQSISANTNYDPGRFPDGKVPMKVLLKDLLTAYKYGVKTLYYHNTRDGAS 778


>gi|73748461|ref|YP_307700.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73660177|emb|CAI82784.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 599

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 306/648 (47%), Gaps = 97/648 (14%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351
           ++L  RY    +  R IE P+  F RVA  +A  E      T+  +   EFY  +S   F
Sbjct: 22  RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  +   GD
Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISCK---GD 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               T+   +     D FM +V     + + +P                           
Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRSGEDYDIINPHT------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C E TL 
Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N     + +
Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +LA+ RG+
Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEIRGS 406

Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           + +++GS++D  G  P                                   MRN+ C +I
Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821
           APT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R+ +      E ++
Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
           S    HD     +E IPD LK++  TA  I P W I   +  QK+ D A S  + +  E 
Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924
           + + +  ++  A+  GLK  T Y   SR+A  +   +S +K VD  L+
Sbjct: 547 TREDMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594


>gi|194448974|ref|YP_002046331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|207857696|ref|YP_002244347.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|194407278|gb|ACF67497.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|206709499|emb|CAR33843.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 761

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|322617029|gb|EFY13935.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617665|gb|EFY14564.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624705|gb|EFY21534.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630254|gb|EFY27024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634435|gb|EFY31168.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639145|gb|EFY35837.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640142|gb|EFY36808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645770|gb|EFY42294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651545|gb|EFY47920.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656106|gb|EFY52405.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659458|gb|EFY55705.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665920|gb|EFY62103.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669842|gb|EFY65983.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673827|gb|EFY69924.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678585|gb|EFY74641.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683619|gb|EFY79633.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687695|gb|EFY83665.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323196208|gb|EFZ81365.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198376|gb|EFZ83478.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204186|gb|EFZ89197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208572|gb|EFZ93511.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212338|gb|EFZ97161.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218255|gb|EGA02965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222987|gb|EGA07336.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227422|gb|EGA11587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232250|gb|EGA16353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235717|gb|EGA19801.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241123|gb|EGA25159.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244865|gb|EGA28867.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248576|gb|EGA32507.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251596|gb|EGA35464.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255475|gb|EGA39238.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263077|gb|EGA46623.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268137|gb|EGA51614.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270770|gb|EGA54208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 761

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|329298016|ref|ZP_08255352.1| ribonucleotide-diphosphate reductase subunit alpha [Plautia stali
           symbiont]
          Length = 761

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 188/673 (27%), Positives = 306/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++  +  ++ P+         LY +   + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYSQ-FEPPK---------LYDQ-IVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDYSTEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    +  V  SNLC EI L        N  S E A+C L + 
Sbjct: 408 STGRIYVQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    +  D ++LA+    AVR LD ++D   + I  AK+     R +G+G++ +  
Sbjct: 468 NLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +  ++ E I +  + AS ELA+E+GA   FK + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANNLTHKTFEAIQYWLLKASNELAKEQGACPWFKETTYSQGILPIDT 582

Query: 726 IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDSVCNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
              ++ +K++  G
Sbjct: 638 PRGHISIKASKDG 650


>gi|312871261|ref|ZP_07731359.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312874780|ref|ZP_07734799.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089525|gb|EFQ47950.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311093275|gb|EFQ51621.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
          Length = 725

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y++     +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|116747708|ref|YP_844395.1| ribonucleotide-diphosphate reductase subunit alpha [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696772|gb|ABK15960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophobacter fumaroxidans MPOB]
          Length = 728

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 182/619 (29%), Positives = 282/619 (45%), Gaps = 79/619 (12%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350
           L +L  RY    + G  IE P+  F RVA  +A  +       + E+ A  FY L++S  
Sbjct: 17  LVVLRKRYLEKDDEGKPIETPEELFWRVARTIAQADVAFQGPEKAEETADRFYALMTSLD 76

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R  
Sbjct: 77  FIPNSPTLMNAGRPLGQLSACFVLPVEDSIDSIFEAIKHAAMIHKSGGGTGFSFSRIRPE 136

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G + G + F+ V +     + QGG R+GA    L   H D+E+F+  +    
Sbjct: 137 NDKVLSTQGVASGPVSFMSVFDTATETIKQGGTRRGANMGILRVDHPDIEKFITCKT--- 193

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  R  + N +  + D FMK V ++A + L SP     +  L  +              
Sbjct: 194 -DNDRMTNFNISIAVTDSFMKAVEEDAEYELISPRTRERVQSLSAR-------------- 238

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               KVF +I+  A WR         G P I F D  N  +P  HVG + S+N C E  L
Sbjct: 239 ----KVFDEITQSA-WRN--------GEPGIIFLDVMNRHNPTPHVGEIESTNPCGEQPL 285

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL +   +   DY+ L   +  AV  LDNVI++N + ++  +   
Sbjct: 286 LPYES----CNLGSINLASMHRDGNIDYEHLKEVVWDAVHFLDNVIEVNNYPLQIIEDMT 341

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MGF   L  L +PY S  AVE A++ M FI   + +AS    +ERG + +
Sbjct: 342 RGNRKIGLGVMGFSDLLISLGVPYNSEAAVETAEKVMSFIQQESKAASAHYGKERGNFVN 401

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           + GS+++                                  R +T  MRN+    IAPT 
Sbjct: 402 YAGSIYE----------------------------------RPETPHMRNATTTTIAPTG 427

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I G S  I+P +   +V+  + G +   V+       ++R  + + ++  +    G
Sbjct: 428 TISIIAGCSSGIEPLFAISFVRKVLDGQELVEVHPLFQKVARERGFYSDDLMKKIA-EKG 486

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
           SI N   IP D++ +  T+ ++ P W I   +  QK  D A S  +      + + +   
Sbjct: 487 SIKNFLEIPADVRNVFVTSHDVTPDWHIRIQAAFQKHTDNAVSKTINFPFSATPEDVSSA 546

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y QA+ +G K     R  S
Sbjct: 547 YLQAYKLGCKGLTIYRDGS 565


>gi|309804853|ref|ZP_07698915.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165792|gb|EFO68013.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
          Length = 725

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+      +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKTMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|262043284|ref|ZP_06016415.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039383|gb|EEW40523.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 761

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 219/794 (27%), Positives = 339/794 (42%), Gaps = 91/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E+G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-DHVVKMVEKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFS  +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 GDITLFSLSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L   V D L  +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 582 TYKKDLDGIVSDPLHYD------WEALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P   ++ +K++  G    VV  +   +     LW      ++  +DG            
Sbjct: 636 EPPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDG------------ 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWL 894
                          ++     QK+IDQ+ S N   D    PSGK    +L      A+ 
Sbjct: 678 --------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYK 723

Query: 895 MGLKTTYYLRSRSA 908
            G+KT YY  +R  
Sbjct: 724 FGVKTLYYHNTRDG 737


>gi|167549729|ref|ZP_02343488.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325233|gb|EDZ13072.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 761

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 342/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VGKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|145298926|ref|YP_001141767.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851698|gb|ABO90019.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 755

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 187/658 (28%), Positives = 298/658 (45%), Gaps = 49/658 (7%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219
           ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I ++  LI E+ P+Y  +
Sbjct: 19  KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIKATADLISEQSPDYQYM 78

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++     ++ P          LY ++  R ++ G   + L       +  
Sbjct: 79  AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVARLVDMGKYDKHLLTDYTQAEFE 127

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            L   L + RD  F Y  ++ L  +Y +   + G   E PQ  ++ VA  L  K  +  +
Sbjct: 128 ELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACLFSKYPKDTR 187

Query: 338 RAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAML 393
            +    FY+ +S+F     TP +  SG R P  Q SSC L    D L  I          
Sbjct: 188 LSYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASAIVRY 245

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                G+G +   +RGLG+ I G      G IPF K         +QGG R GA   +  
Sbjct: 246 VSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFYP 305

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH +VE  L L+ N G +  R   M+    I  L  +R+ +    TLFSP +   L+D 
Sbjct: 306 LWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYDA 365

Query: 514 Y---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +     +FE  Y  YE+          RK  I AV L+  M+     TG  +I   D CN
Sbjct: 366 FFADQDKFEALYVKYEQDP------AIRKKTIKAVDLFSLMMQERAGTGRIYIQNVDHCN 419

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  V  SNLC EI L        +    E A+C L + NL A       D +
Sbjct: 420 THSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNLGA--IEKLEDLE 477

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           ++A     AVR LD ++D   + ++ A+K +   R +G+G++ +   L      Y+    
Sbjct: 478 EMAD---LAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYLAKNGARYSDGSG 534

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           + +   + E I F+ + ASV+LA+E G   +F  + + QG+ PID+     +  D L  N
Sbjct: 535 LALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDT---YKKDLDNLC-N 590

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               L W+ L++ +KT+G+RNS   A+ P+ T + I   +  I+P    + VK++  G
Sbjct: 591 EPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNSTNGIEPPRGLVSVKASKDG 648


>gi|198243793|ref|YP_002216346.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938309|gb|ACH75642.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 780

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 212/814 (26%), Positives = 352/814 (43%), Gaps = 87/814 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++  +Y  + AR  +  LR++       +P 
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDASDYQYLAARLAIFHLRKKAFGQF--EPP 119

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
              HH           + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 120 ALYHH---------VVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTP 356
             +Y +   + G   E  Q  ++ VA  L      +E R      FY+ +S+F     TP
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTP 229

Query: 357 TLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  SG R P  Q SSC L    D L  I               G+G +   +R LG+ I
Sbjct: 230 IM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPI 287

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G      G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  
Sbjct: 288 RGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGN 347

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADR 531
           R   M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE     
Sbjct: 348 RVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSI 407

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL 590
            +    +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI L
Sbjct: 408 RK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIAL 463

Query: 591 --------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                   N  + E A+C L + NL A         D+L      AVR LD ++D   + 
Sbjct: 464 PTKPLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I  AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA
Sbjct: 519 IPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+GA   F  + + +G+ PID+       +D +  +N      W++L++ +KT G+RNS
Sbjct: 579 KEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNS 633

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ P+ T + I   +  I+P    + +K++  G   ++   + +    +D ++  ++
Sbjct: 634 TLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LL 688

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-- 879
            ++  +DG                           ++     QK+IDQ+ S N   D   
Sbjct: 689 WEMPNNDG--------------------------YLQLVGIMQKFIDQSISANTNYDPSR 722

Query: 880 -PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908
            PSGK    +L      A+  G+KT YY  +R  
Sbjct: 723 FPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 756


>gi|123441722|ref|YP_001005706.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088683|emb|CAL11485.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 761

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 208/792 (26%), Positives = 343/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNELAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + ++ ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|168229640|ref|ZP_02654698.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469857|ref|ZP_03075841.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249651|ref|YP_002147233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194456221|gb|EDX45060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213354|gb|ACH50751.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205335883|gb|EDZ22647.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 761

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 1103

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 219/432 (50%), Gaps = 58/432 (13%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
           A +GL    SKIV S    ++ DG+S   L+      S ++  + P+Y  + AR  +  L
Sbjct: 49  AMTGLSVDVSKIVAS-VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNL 107

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
                       QK TH ++   Y E             + H          L+ND K  
Sbjct: 108 ------------QKQTHDKITDAYAE-------------IAH---------LLSNDFKEN 133

Query: 289 -RDFAFEY--------------LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
               A EY               G + +   Y   +N   +E PQ  ++RVA+GL   + 
Sbjct: 134 IEKHADEYQSFIDYDRDYDFDYFGFKTMERLYLTKVNNKIVERPQHVYLRVAIGLWGSDI 193

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            + K   E Y+ LS   F  ++PTLFN+G +  QL+SCFL TV D L  I+  L + A L
Sbjct: 194 ARVK---ETYDALSCRKFTHASPTLFNAGFKKAQLASCFLVTVEDSLGDIYKVLGDCAQL 250

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GGLG + + +RG G+ I+GTNG+S G++P LKV + T+   NQGG+RKG+   YLE
Sbjct: 251 SKHGGGLGINISEIRGRGSRINGTNGESDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLE 310

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DV +FL +++N G++  R  ++  A W+ DLFMKRV  +A W+LF P E   L D 
Sbjct: 311 PHHSDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFDPSECPGLTDA 370

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G E+   YE YE      E K    + A  +W  M+T + ETG P+++ KD  N ++ Q
Sbjct: 371 FGDEYAELYERYE-----AEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVNKKNMQ 425

Query: 574 QHVGVVHSSNLC 585
            + G +  SNLC
Sbjct: 426 MNAGTIRGSNLC 437



 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 201/348 (57%), Gaps = 14/348 (4%)

Query: 572  PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
            P++H+GV +   +  C EI   +S EETAVC +GS+ L  +  N++FD+D L   ++   
Sbjct: 758  PKRHMGVFNGVITGQCNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLRKNVKILA 817

Query: 630  RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + LD  ID+  + I++A+ SN   R IG+G+ G Q     L   Y SPEA ++  E  E 
Sbjct: 818  KNLDRSIDVMAYPIKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDLNREIFEH 877

Query: 690  ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            I + A+ ASVELA+  G Y +F+GS   +G+        L +V  +      S L W  L
Sbjct: 878  IYYAAVEASVELAEIHGPYPTFEGSPASKGILQYH----LWDVTPK------SNLDWRGL 927

Query: 750  KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            ++RVK  G+RNS   A+ PTA+ A ICG  ++ +P   NLY +  ++G+F V+NS+LV E
Sbjct: 928  EERVKK-GIRNSLVTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVINSYLVRE 986

Query: 810  LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            L +R  W+E M + +  + GSI  +  I   +K ++ TA+++    +I+ AS R  ++DQ
Sbjct: 987  LIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMASDRGAFVDQ 1046

Query: 870  AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             QS+NL+L +P+ K +  +    W  GLKT  YYLRS+ A+S    T+
Sbjct: 1047 TQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPASSAIAVTI 1094


>gi|323700021|ref|ZP_08111933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. ND132]
 gi|323459953|gb|EGB15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans ND132]
          Length = 749

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 179/629 (28%), Positives = 300/629 (47%), Gaps = 89/629 (14%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFH 350
           LQ  Y R      G   E  +  F RVA  +A +E + E+  V       +FY+L++S+ 
Sbjct: 23  LQRRYQRK--DTEGVVYETVKELFWRVASAIAAEEAKYERSTVKPAKLARDFYDLMTSYR 80

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+GT   QL++CF+  V DD+ GIF A++  AM+ K  GG G  ++ +R  
Sbjct: 81  FLPNSPTLMNAGTDLGQLAACFVLPVADDIEGIFDAVKHAAMIHKSGGGTGFAFSRLRAK 140

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            + +  T G + G + FLK+ N     + QGG R+GA    L   H D+ EF+  ++  G
Sbjct: 141 DSVVGSTGGVASGPLSFLKIFNCATEQIKQGGTRRGANMGILRIDHPDIMEFIKAKERDG 200

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +     ++ N +  + + FM+ V + A + L +P+    +  L  ++             
Sbjct: 201 E----LNNFNLSVGLTEAFMQAVNEKADYNLIAPNTGEAVGTLNARD------------- 243

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                         ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L
Sbjct: 244 --------------VFNILVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPCGEQPL 289

Query: 591 NSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                    CNLGSINL   FA      +++ D+D+L   I  +VR LDNVID + + ++
Sbjct: 290 LPYE----ACNLGSINLGLCFAKGRNGKDSEIDWDELKRIIHLSVRFLDNVIDASVYPLD 345

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  +    +R IGLG+MG+   L+ L IPY S  AV++A+  M+F+   + SAS +LA E
Sbjct: 346 QITEMVGKNRKIGLGVMGWADLLYQLQIPYNSQTAVDMAERVMKFVQAESRSASKQLATE 405

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG + ++                       E    + +  P+            RN+   
Sbjct: 406 RGQFPAYP----------------------ESTFGKANLGPY------------RNATTT 431

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823
            IAPT T++ I G S  ++P +   +V++ M  D  V  N +    L   D +   ++ +
Sbjct: 432 TIAPTGTLSIIAGCSSGVEPLFALSFVRNVMDNDKLVETNPYFEAALNSADAYSGKLMEE 491

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +    GSI  ++ +P+ L+ ++ T+ +I+P+W ++  +  QK+ D A S  + L   S  
Sbjct: 492 IA-KVGSIKKMDHLPEHLRHVYVTSMDIEPIWHLKMQAAFQKYTDNAVSKTVNLPN-SAT 549

Query: 884 KLDF--IYRQAWLMGLKTTYYLRSRSATS 910
           K D   IY +A+  G K     R  S TS
Sbjct: 550 KEDIWDIYWKAYEYGCKGVTVYRDGSKTS 578


>gi|307626228|gb|ADN70532.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
          Length = 761

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 213/794 (26%), Positives = 344/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A     ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNPTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|118576941|ref|YP_876684.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
 gi|118195462|gb|ABK78380.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
          Length = 881

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 168/588 (28%), Positives = 292/588 (49%), Gaps = 50/588 (8%)

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           +A +     +R  E+Y L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI  + 
Sbjct: 239 IAKRHNNYAERISEYYELMASQDFLPNSPTMMNAGGRLGQLSACFVLNMPDDMGGIMKST 298

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            + AM+ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA
Sbjct: 299 SDAAMIFKSGGGVGINYSDLRQEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGA 358

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               +E WH DVE+F+  +   G       + N +  + + F +         L  P E 
Sbjct: 359 NMGIIEAWHPDVEKFITNKTEAG----ILENFNVSVGVWEDFWQ--------ALAGPGE- 405

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                  GK        Y  ++  G  K  R+ISA  L   +    +++  P + F D  
Sbjct: 406 -------GK--------YMLRSTAG--KPVREISAHQLIDLIAHSAWKSAEPGLIFFDNI 448

Query: 568 NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYD--K 620
           N  +   +   G + ++N C E +L         CNLGSINL   +   A+ +F++D  +
Sbjct: 449 NKYNVLAKAMGGALRATNPCGEQSLYPYES----CNLGSINLARLVKRKADGEFEFDWQR 504

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               IR   R LDNVID+N + +++  +++   R IGLG+MG    L+ L IPY S E  
Sbjct: 505 YEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESRRIGLGVMGVADLLYKLRIPYNSKEGY 564

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E ++++++  SV LA+ RG +     + + +G  P+     LA  RDE   + 
Sbjct: 565 DLQSKLAEALTYYSMEESVALAKSRGEFPLCPQTEYPEGKIPVAGYYELA--RDEHTYD- 621

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD L  ++K  G+RN+    +APT T++ +   S  ++PS+  ++ K    G F 
Sbjct: 622 -----WDALIDKIKRHGIRNALTTTVAPTGTLSMLADCSNGMEPSFALVFEKRVTVGKFF 676

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N  +   LK+  L+++ +++ +  + GS+  +E IP+ ++KI  TA +I     +   
Sbjct: 677 YTNKIIAQILKEHGLYNDDLLARISENYGSLRGLEEIPEWMQKIFVTAMDIHWSDHLMVQ 736

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           S  Q+WI  A +  + + ++ +   +   Y  A  +GLK T   R  S
Sbjct: 737 SVWQEWIGNAIAKTINMPNDVTADDVKASYLLAHELGLKGTTVYRDGS 784



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 8/98 (8%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG + +F+  KI+ AI KA        A+ S    D+   L    V +L+Q   S  I
Sbjct: 15  KRNGTLDNFNMDKITNAISKAL-------AATSEADHDLASELAHGVVKKLVQQGFSISI 67

Query: 93  V-HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +EDIQD VE +L++SGH +I + Y+LYR ER  +R
Sbjct: 68  PPSVEDIQDMVESTLIESGHSEIAKAYILYRHERRKIR 105


>gi|330829607|ref|YP_004392559.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
 gi|328804743|gb|AEB49942.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
          Length = 755

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 189/660 (28%), Positives = 299/660 (45%), Gaps = 53/660 (8%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219
           ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I ++  LI E+ P+Y  +
Sbjct: 19  KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETIIKATADLISEQTPDYQYM 78

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++     ++ P          LY ++  R ++ G   + L E     +  
Sbjct: 79  AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVARLVDMGKYDKHLLEDYTQAEFE 127

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            L   L + RD  F Y  ++ L  +Y +   + G   E PQ  ++ VA  L   +  K+ 
Sbjct: 128 ELNTHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACL-FSKYPKDT 186

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R      FY+ +S+F     TP +  SG R P  Q SSC L    D L  I         
Sbjct: 187 RLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASSIVR 244

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +RGLG+ I G      G IPF K         +QGG R GA   + 
Sbjct: 245 YVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFY 304

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH +VE  L L+ N G +  R   M+    I  L  +R+ +    TLFSP +   L+D
Sbjct: 305 PLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYD 364

Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPC 567
            +     +FE  Y  YE+          RK  + AV L+  M+     TG  +I   D C
Sbjct: 365 AFFADQDKFEELYVKYEQDP------AIRKKTLKAVDLFSLMMQERAGTGRIYIQNVDHC 418

Query: 568 NIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618
           N  SP    V  V  SNLC EI L        +  S E A+C L + NL A       D 
Sbjct: 419 NTHSPFDPSVAPVRQSNLCLEIALPTKPLNNIDDESGEIALCTLSAFNLGA--IEKLEDL 476

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +++A     AVR LD ++D   + I  AKK +   R +G+G++ +   L      Y+   
Sbjct: 477 EEMAD---LAVRALDALLDYQDYPIAAAKKGSMGRRTLGIGVINYAYYLAKNGARYSDGS 533

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            + +   + E I ++ + ASV+LA+E G    F  + + QG+ PID+       +D  A+
Sbjct: 534 GLALTHRTFEAIQYYLLKASVQLAREFGPCPLFGETTYAQGILPIDTYK-----KDLDAL 588

Query: 739 -NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            N    L W+ L++ +K++G+RNS   A+ P+ T + I   +  I+P    + VK++  G
Sbjct: 589 CNEPLHLDWESLREEIKSVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVKASKDG 648


>gi|315654124|ref|ZP_07907040.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
 gi|315488820|gb|EFU78466.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
          Length = 725

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 316/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y++     +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTANIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N      + K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDNT-----NYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|204929225|ref|ZP_03220368.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321769|gb|EDZ06968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 761

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 210/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS EL++E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELSKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|50120138|ref|YP_049305.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610664|emb|CAG74109.1| ribonucleoside-diphosphate reductase 1 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 761

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 213/790 (26%), Positives = 345/790 (43%), Gaps = 87/790 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I 
Sbjct: 5   LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P   TH              +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTNMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSAEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRMDYVKRFYDAISMFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I A  L+  M+   
Sbjct: 351 EEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKASELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  D + LA+    AVR LD ++D   + I+ A++     R +G+G++ F 
Sbjct: 467 FNLGA--INSLDDLEDLAT---LAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA + F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACTWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD  A+ N    L W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDAICNEPLHLDWETLRKDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G   ++   +      +D ++  ++ ++  +DG              
Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L      A+  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725

Query: 897 LKTTYYLRSR 906
           +KT YY  +R
Sbjct: 726 VKTLYYQNTR 735


>gi|156975011|ref|YP_001445918.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526605|gb|ABU71691.1| hypothetical protein VIBHAR_02733 [Vibrio harveyi ATCC BAA-1116]
          Length = 760

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 218/798 (27%), Positives = 348/798 (43%), Gaps = 97/798 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y + +  T H+       +  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   + ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTKAELDELDAYMDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ V+  L      KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE       IK    + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           D+    + L+ E  +EL  +      WD L++ +   G+RNS   A+ P+ T + I   +
Sbjct: 581 DTYKKDVDLICE--EELHYD------WDSLRQEIMEHGLRNSTLTALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + VK++  G    VV  F   ELK     +  ++ ++  +DG         
Sbjct: 633 NGIEPPRGFVSVKASKDGILKQVVPDFA--ELKD----NYELLWNIGSNDGY-------- 678

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYR 890
                +H                  QK++DQA S N   D PSG        KKL     
Sbjct: 679 -----LHLVGI-------------MQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLL 719

Query: 891 QAWLMGLKTTYYLRSRSA 908
            A+  G+KT YY  +R  
Sbjct: 720 TAYKFGVKTLYYHNTRDG 737


>gi|289677032|ref|ZP_06497922.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 205

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 146/205 (71%), Gaps = 17/205 (8%)

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 3   ATAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 62

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 63  KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 122

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 123 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 180

Query: 942 -----------SSCTSD-TECEVCQ 954
                       +C  D  +CE CQ
Sbjct: 181 EAAPAGPAPVPKACAIDEPDCEACQ 205


>gi|157961885|ref|YP_001501919.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           pealeana ATCC 700345]
 gi|157846885|gb|ABV87384.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           pealeana ATCC 700345]
          Length = 762

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 214/781 (27%), Positives = 349/781 (44%), Gaps = 93/781 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++E A  GL +VS   V   ++   +DG++   +   +I ++  LI  E P+Y  +
Sbjct: 21  KIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIKAAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +AR  +  LR++       +P K   H           + IE G   + + E     ++ 
Sbjct: 81  SARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLIELGKYDQHILEDYSQEEID 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            L + + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L  K   KE 
Sbjct: 130 TLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFAK-YPKET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+  S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G D  R   ++    I  +  +R+ Q    +LFSP +V  ++D
Sbjct: 307 PMWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKVMYQRLIQGGMISLFSPSDVPGMYD 366

Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +    +EFE  Y  YE  AD    K  ++I AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQEEFERLYLKYE--ADDSIRK--KQIKAVELFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  V  SNLC EI L        N    E A+C L ++NL A         ++
Sbjct: 423 HSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNLGA-----IKKLEE 477

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LDN++D   + I  A+K++   R +G+G++ F + L    + Y+   A 
Sbjct: 478 LEPLADLAVRALDNLLDYQDYPIISAQKASMNRRTLGIGVINFANYLAKEGVRYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739
            I  ++ E I F+ + AS++LA+E+GA  +F  + + +G+ PID+    L ++ DE    
Sbjct: 538 GITHKTFEAIQFYLLKASMKLAKEQGACPAFHETTYSKGILPIDTYKRDLDKICDE---- 593

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 594 -PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG-- 650

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    +LKQ       ++ D + +  S   + ++P++   +               
Sbjct: 651 ---------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYLQLVGL---------- 684

Query: 860 ASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909
               QK++DQ+ S N   D PS   G ++       D +   A+  G+KT YY  +R   
Sbjct: 685 ---MQKFVDQSISANTNYD-PSRFEGGRVPMKVLLKDLL--TAYKYGVKTLYYHNTRDGA 738

Query: 910 S 910
           S
Sbjct: 739 S 739


>gi|293395207|ref|ZP_06639493.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422384|gb|EFE95627.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 762

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 185/675 (27%), Positives = 307/675 (45%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLHAH----------VVRMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYSTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRQ----KRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  D ++LA+    AVR LD ++D   + I+ A +     R +G+G++ F 
Sbjct: 467 FNLGA--IDSLDDLEELAT---LAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYAQGILPID 581

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +    L    ++ L  +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I
Sbjct: 582 TYKKDLDGICQEPLHYD------WETLRKEIQETGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSG 797
           +P   ++ +K++  G
Sbjct: 636 EPPRGHISIKASKDG 650


>gi|238788615|ref|ZP_04632407.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238723210|gb|EEQ14858.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 761

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 207/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|300362787|ref|ZP_07058961.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
 gi|300353077|gb|EFJ68951.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
          Length = 626

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 184/641 (28%), Positives = 301/641 (46%), Gaps = 73/641 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +G    Y  Y L  N ++ +  + F  R  M         E+ A+     + S  F  +T
Sbjct: 1   MGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLVKDIISNRFQPAT 59

Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R LGA I
Sbjct: 60  PTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPI 119

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                 S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ 
Sbjct: 120 KKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKV 179

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADR 531
           R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I  E Y+   + 
Sbjct: 180 RIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNLLNN 235

Query: 532 GEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-- 588
             I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI  
Sbjct: 236 PCIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQ 293

Query: 589 --TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-- 636
             T ++ +E+ +         CNLGS+N+ A   +     DKL   +  +V+ L+ V   
Sbjct: 294 VNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARS 349

Query: 637 -DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE        I++HA
Sbjct: 350 SDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHA 406

Query: 695 ISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP----W 746
              S +LA++ GA+  FK S +  G     F  + +    +   E+       LP    W
Sbjct: 407 FKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVLPTKEDW 466

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ 
Sbjct: 467 EELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYK 526

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +N+                             D+ +     A+E+ P  +I+  +  QK+
Sbjct: 527 INK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKY 557

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQ+ SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 558 VDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 598


>gi|309805907|ref|ZP_07699939.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|312873293|ref|ZP_07733348.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|308167683|gb|EFO69830.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|311091173|gb|EFQ49562.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
          Length = 725

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+      +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|309804069|ref|ZP_07698150.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308163837|gb|EFO66103.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
          Length = 725

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+      +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|89074074|ref|ZP_01160575.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
 gi|89050212|gb|EAR55723.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
          Length = 755

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 213/806 (26%), Positives = 350/806 (43%), Gaps = 89/806 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTESIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E  P+Y  + AR  +  LR++       +P K   H             +E+
Sbjct: 64  KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDHVKNL---------VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E   + +   + N + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ +A  L   +  KE R      FY+  +S  F  S PT   SG R P  Q SSC L  
Sbjct: 173 YILIAAAL-FNKYPKETRLDYIKRFYD--ASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +    IK    I A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L      N   E  E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     ++ +  +     R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK--KDINNICSAEL--RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G   ++   +    K ++ ++  ++ ++  +DG              
Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKENYE--LLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWL 894
                        ++     QK+IDQA S N   D  + +G K+       D +   A+ 
Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLL--NAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920
           +G+KT YY  +R   S  +  +   D
Sbjct: 724 LGVKTLYYHNTRDGASDSQGDMAADD 749


>gi|94993747|ref|YP_601845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94547255|gb|ABF37301.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 726

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 211/780 (27%), Positives = 349/780 (44%), Gaps = 131/780 (16%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF--- 291
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 292 --------AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-- 341
                   AF Y   Q      FL++ G+ ++  Q++ ++   G    ET  E RAV   
Sbjct: 72  YPNDLIKEAFHYAYQQ---GYRFLNLMGA-MKFYQSYALKTLDGKHYLET-FEDRAVMNA 126

Query: 342 ----------FYNLLSSF---HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
                      ++++ +     F  +TPT  N+G  R  +  SC+L  V D++  I  A+
Sbjct: 127 LFLADGDQTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAI 186

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA
Sbjct: 187 STSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGA 246

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP   
Sbjct: 247 GAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP--- 303

Query: 508 SDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            D+   YGK+  +I+  E Y++      IK    ISA   ++ +  + FE+G+P++ F D
Sbjct: 304 YDIKRAYGKDMSDISITEEYDKLLANPAIKK-TYISARKFFQLIAELHFESGYPYLLFDD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A 
Sbjct: 363 TVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA- 421

Query: 614 NQFDYDKLASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              D       I T++R LD V    D+NC  ++E    +NH   A+GLG M     L  
Sbjct: 422 ---DAPHFEQLITTSIRALDRVSRLSDLNCAPSVETGNAANH---AVGLGAMNLHGFLAT 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +        
Sbjct: 476 NHIYYDTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTY-------F 528

Query: 730 AEVRDELAMNRTSR-----------LP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           A+   E A  +T++           LP    W  L   +K  G+ N++ +A+APT +I+ 
Sbjct: 529 AKYLQEDAKPQTAKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+   S     V ++ +++            ++  Y++      
Sbjct: 589 LSSCTPSLQPVVAPVEVRKEGSLGRIYVPAYQIDQ------------ANYAYYERG---- 632

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+
Sbjct: 633 -------------AYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + YY+R R      +  L G +       VT P +S           + TEC  C
Sbjct: 680 KQNCASIYYVRVR------QDVLAGSEQYDEDSLVTAPGASDE---------TTTECHSC 724


>gi|317484384|ref|ZP_07943302.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
 gi|316924359|gb|EFV45527.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
          Length = 751

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 174/632 (27%), Positives = 300/632 (47%), Gaps = 90/632 (14%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFH 350
           ++L  RY+    NG  +E     F RVA  +A +E + E+        A  FY++++ + 
Sbjct: 19  KVLSKRYYRKDENGQCVEDATGLFWRVASSVAAEEAKYEQSPWKPDALARAFYDMMTDWR 78

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G+   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R  
Sbjct: 79  FLPNSPTLMNAGSELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPK 138

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G
Sbjct: 139 NSRVGTTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDILEFIRAKEQEG 198

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +     ++ N +  I + FM+ V Q+  + L +P          GKE             
Sbjct: 199 E----FNNFNLSVGITEAFMQAVEQDRDYALVNPAS--------GKE------------- 233

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           +G      +++A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L
Sbjct: 234 QG------RLNAREVFNLLVDKAWQSGDPGIIFLDRINRDNPTPAQGEIESTNPCGEQPL 287

Query: 591 NSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
                    CNLGS+NL + F          A+   D+  +  TI  AVR LDNV+D + 
Sbjct: 288 LPYE----ACNLGSLNLSSFFVPGHLDETNPADRGIDWAGIERTIALAVRFLDNVVDASQ 343

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+  +    +R IGLG+MG+   L+ L IPY S +A+ +A+  M+FI     +AS++
Sbjct: 344 FPLERIAEQVRRNRKIGLGVMGWADLLYQLRIPYDSADAITLAERIMDFIETRGRAASIQ 403

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG + +++ S     V+P   I  L                             RN
Sbjct: 404 LAAERGPFPAYETS-----VYPTKGIPPL-----------------------------RN 429

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEA 819
           +    IAPT T++ + G S  ++P +   + ++ M G+    VN      L++ D + + 
Sbjct: 430 ATITTIAPTGTLSILAGCSSGVEPLFALSFARNVMDGERLMEVNPHFEEALREIDCYSQP 489

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           ++  +    GSI +++++P+DL+++  TA +I P W +   +  Q+  D A S  + L  
Sbjct: 490 LLEGVA-ELGSIQSLDQLPEDLRRVFVTAMDIAPEWHLRMQAAFQRHTDNAVSKTVNLPN 548

Query: 880 PSGKKLDF-IYRQAWLMGLKTTYYLRSRSATS 910
            + +   F IY  A+  G K     R  S ++
Sbjct: 549 SATRDDIFAIYWMAYEEGCKGVTVYRDGSKST 580


>gi|304373618|ref|YP_003858363.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
 gi|299829574|gb|ADJ55367.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
          Length = 750

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 212/793 (26%), Positives = 350/793 (44%), Gaps = 83/793 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205
           ++   G   +F  ++L  ++  A +G +++     L      + DG++   ++  A+ ++
Sbjct: 7   VVKSSGVSQTFEKEKLFKVLNWASAG-KNIDVNAFLENVVDLLRDGMTTKQIQAVAIKYA 65

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +  KEP++  V A   +  LR+ V       P           + E+  + +E G  
Sbjct: 66  ADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVEAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
            + +       D+ Y   ++ +++DF F Y G+Q L  +Y L    NG   E PQ  FM 
Sbjct: 115 DKEILTKWTKSDIEYFEENINHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQYAFML 174

Query: 324 VAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378
           +AM L   E          V+FYN +S       TP +  +G R P  Q SSC +    D
Sbjct: 175 IAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGD 232

Query: 379 DLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            L G   A+   + + KY     G+G +   +R +G+ I G      GVIPF K      
Sbjct: 233 SL-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+  
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNRGVEENRIRHLDYGVQLNDLMYKRLIN 349

Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           N   TLFSPD  +D L+D + +  +  +E      ++      ++I AV L++ ++    
Sbjct: 350 NDYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPAVRKKRIKAVDLFQLLVQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSS---SEETAVCNLGSINLLAH 610
           +TG  +I      N    Q    V +  SNLC EI + +S    ++     +G   L+A 
Sbjct: 410 QTGRKYIFNSHHVN---QQGSFSVPIRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLMAI 466

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             +N  D  +  +  R AVR LDN++D   + +  A K+    R++G+G+  + S L   
Sbjct: 467 VLDNA-DISEFPALTRIAVRALDNLLDYQNYPVAAALKAKQ-RRSLGVGITNYASWLASN 524

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +  Y+   A  +  E ME   F+ + AS+ELAQERGA   F  + + QG+ PID      
Sbjct: 525 YCDYSEAYAGNV-HELMEAFQFNLLVASMELAQERGACGLFHETKYAQGLLPID---WYC 580

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DELA +      W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    + 
Sbjct: 581 KNVDELA-SPVYNCDWEWLRGEIKKHGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKS+  G F   N  + N+  Q D +D       + + G + ++  +             
Sbjct: 640 VKSSKEGSF---NQVVPNQNNQIDFYDYLWTMAKRGNKGYLAHVAVM------------- 683

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTTY 901
                        QK++DQA S N   D    P GK        D +Y  A   G+KT Y
Sbjct: 684 -------------QKFVDQAISANTNYDPANFPDGKVKSEIILEDLLY--ANYFGIKTLY 728

Query: 902 YLRSRSATSVEKS 914
           Y  +R     E++
Sbjct: 729 YHNTRDGAGEEEA 741


>gi|225023975|ref|ZP_03713167.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
 gi|224943000|gb|EEG24209.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
          Length = 759

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 213/801 (26%), Positives = 341/801 (42%), Gaps = 87/801 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAQGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    Y+ P    H            +   EG
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYGQYEPPHLFDH----------VSKLTAEG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFF 321
              R + E     +   +   + + RD  F Y  ++ L  +Y +    +R   E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDEIDGYIDHARDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VAM L  K  +  +      FY+ +S F     TP +  SG R P  Q SSC L    
Sbjct: 176 ILVAMCLFAKYPKATRLDYVKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIECD 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLG+ I G   +  G IPF K+      +
Sbjct: 234 DSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+VE  L L+ N G +  R   ++    I  L   R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHIEVESLLVLKNNRGVEDNRVRQLDYGVQINRLLYTRLIKGG 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L+D +     EFE  Y  YE+     +    R + A  L+  ++    
Sbjct: 354 NITLFSPNEVPGLYDAFFADQDEFERLYVQYEQDPAIRK----RVVPATELFSTLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D  N  SP    V  V  SNLC EI L        N  + E A+C L + 
Sbjct: 410 GTGRIYIHNVDHSNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A       + D+L +    AVR LD ++D   + I  A+K+    R +G+G++ +  
Sbjct: 470 NLGA-----LENLDELENLSDLAVRALDALLDYQDYPIPAARKATMNRRTLGIGVINYAY 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y++  A+ +   + E + ++ + ASV+LA+E GA   F  +++ +GV PID+
Sbjct: 525 YLAKHGVRYSNDSALALTHRTFEAMQYYLLKASVQLAKEYGACPLFGQTMYAKGVLPIDT 584

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +  D +  +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 585 ---YKKDLDSIC-SEPLHYDWEALRAEIVQHGLRNSTLTALMPSETSSQIANATNGIEPP 640

Query: 786 YQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + VK++  G    VV  F   + +   LW            G+ G ++ +       
Sbjct: 641 RGLVSVKASKDGILKQVVPEFDRLKNQYETLWQMG---------GNDGYLKLV------- 684

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMG 896
                              QK++DQA S N   D         P  + L  +   A+  G
Sbjct: 685 ----------------GIMQKFVDQAISANTSYDPKRFDGGRVPMKQMLKDLL-TAYKFG 727

Query: 897 LKTTYYLRSRSATSVEKSTLK 917
           LKT YY  +R      +S ++
Sbjct: 728 LKTLYYHHTRDGADDTQSDIQ 748


>gi|259500783|ref|ZP_05743685.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|302190766|ref|ZP_07267020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners AB-1]
 gi|259167477|gb|EEW51972.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 725

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 317/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+      +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|85059562|ref|YP_455264.1| ribonucleotide-diphosphate reductase subunit alpha [Sodalis
           glossinidius str. 'morsitans']
 gi|84780082|dbj|BAE74859.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 760

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 212/794 (26%), Positives = 336/794 (42%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG   + N  ++  +++ A  GL++VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKETINLDKIHRVIDWAAEGLENVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++       +P K   H  + +    + +++   
Sbjct: 65  AAADLISREAPDYQYLAARLAVFHLRKKAYGQF--EPPKLYDHVSRLVTMGKYDKHLLTD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A    E M  F        + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 123 YSAEEF-EQMDSF--------IDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           M VA  L      T +      FYN +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 MLVAACLFSGYPRTTRLDYVKRFYNAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNKLMYQRLVKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TL SP +V  L+D +     EFE  Y  YE+ +   +    R+I AVAL+  M+    
Sbjct: 352 YITLLSPSDVPGLYDAFFADQDEFERLYTLYEQDSSIRQ----RRIKAVALFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    V  +  SNLC EI L        N  S E A+C L + 
Sbjct: 408 STGRIYVQNVDHCNTHSPFDAAVAPIRQSNLCLEIALPTKPLEDVNDDSGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F  
Sbjct: 468 NLGAIDS-----LDDLGELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGVGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ P+D+
Sbjct: 523 YLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNDLARERGACPWFNETTYAQGILPVDT 582

Query: 726 I-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 G+++E              W+ L+  +K  G+RNS   A+ P+ T + I   + 
Sbjct: 583 YKKDLDGIVSE---------PLHYDWEALRADIKQHGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            ++P    + +K++  G    VV   +  +     LW+                   +P 
Sbjct: 634 GLEPPRGLVSIKASKDGILRQVVPESIPLQKAYELLWE-------------------MPS 674

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQA 892
           +   +H                  QK++DQA S N   D    P+G    K+L      A
Sbjct: 675 NDGYLHLVGV-------------MQKFVDQAISANTNYDPSRFPAGKVPMKQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|85723395|gb|ABC78338.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 771

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 173/598 (28%), Positives = 279/598 (46%), Gaps = 85/598 (14%)

Query: 284 DLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRVAMGLALK------ETEKE 336
           D+    D A + LG + L  DR     +G+ +E P   F RVA  +A        + +  
Sbjct: 37  DISSLTDNAIKVLGRRYLKRDR-----DGNALETPSQMFKRVADTIAAADRIFNDQADTA 91

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
             + +FY ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K 
Sbjct: 92  GLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKS 151

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG G  ++ +R     +  T G S G I F++V +     + QGG R+GA    L   H
Sbjct: 152 GGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDH 211

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  F+  +     D+ + ++ N +  + ++FM  V  +  + L +P +   +  L  +
Sbjct: 212 PDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRDGQVIGTLNAR 267

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                             KVF +I A A W        E G P I F D  N  +P  H+
Sbjct: 268 ------------------KVFDRIVAQA-W--------ENGEPGIVFLDRLNRDNPTPHI 300

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           GV+ S+N C E  L         CNLGSINL     N + ++ +L   +  AV  LDNV+
Sbjct: 301 GVIESTNPCGEQPLLPYES----CNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVV 356

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +IN + +    +    +R IGLG+MG+   L  L IPY S  A+E+A+E M+FI+     
Sbjct: 357 EINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHD 416

Query: 697 ASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           AS  LA++RG + +FK SL+D QG  PI                                
Sbjct: 417 ASHALAKKRGPFPNFKESLYDKQGKAPI-------------------------------- 444

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRD 814
              RN+    IAPT TI+ I   S  ++P +   Y++  M  D  + +N F     K+R 
Sbjct: 445 ---RNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERG 501

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            + + ++  +    G+I +++ +P D++ +  TA +I P   I   +  QK+ D A S
Sbjct: 502 FYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVS 558


>gi|161347547|ref|YP_462506.2| ribonucleotide-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
          Length = 743

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 173/598 (28%), Positives = 279/598 (46%), Gaps = 85/598 (14%)

Query: 284 DLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRVAMGLALK------ETEKE 336
           D+    D A + LG + L  DR     +G+ +E P   F RVA  +A        + +  
Sbjct: 9   DISSLTDNAIKVLGRRYLKRDR-----DGNALETPSQMFKRVADTIAAADRIFNDQADTA 63

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
             + +FY ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K 
Sbjct: 64  GLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKS 123

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG G  ++ +R     +  T G S G I F++V +     + QGG R+GA    L   H
Sbjct: 124 GGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDH 183

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  F+  +     D+ + ++ N +  + ++FM  V  +  + L +P +   +  L  +
Sbjct: 184 PDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRDGQVIGTLNAR 239

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                             KVF +I A A W        E G P I F D  N  +P  H+
Sbjct: 240 ------------------KVFDRIVAQA-W--------ENGEPGIVFLDRLNRDNPTPHI 272

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           GV+ S+N C E  L         CNLGSINL     N + ++ +L   +  AV  LDNV+
Sbjct: 273 GVIESTNPCGEQPLLPYES----CNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVV 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +IN + +    +    +R IGLG+MG+   L  L IPY S  A+E+A+E M+FI+     
Sbjct: 329 EINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHD 388

Query: 697 ASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           AS  LA++RG + +FK SL+D QG  PI                                
Sbjct: 389 ASHALAKKRGPFPNFKESLYDKQGKAPI-------------------------------- 416

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRD 814
              RN+    IAPT TI+ I   S  ++P +   Y++  M  D  + +N F     K+R 
Sbjct: 417 ---RNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERG 473

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            + + ++  +    G+I +++ +P D++ +  TA +I P   I   +  QK+ D A S
Sbjct: 474 FYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVS 530


>gi|212224967|ref|YP_002308203.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
 gi|212009924|gb|ACJ17306.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
          Length = 910

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 160/601 (26%), Positives = 283/601 (47%), Gaps = 56/601 (9%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           E++ L++S  FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ K  GG 
Sbjct: 243 EYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGGGT 302

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE WH D+E
Sbjct: 303 GLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPDIE 362

Query: 461 EFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +F+  + KN G +     +++   W    F + + +   + L +P               
Sbjct: 363 KFIHAKEKNIGTNVLANFNISVGIW--SDFWEALREGKRYPLINP--------------- 405

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577
                  R  ++      ++I   +L+ ++  M +    P + F D  N R+  +     
Sbjct: 406 -------RTGEK-----VKEIDPKSLFEELAFMAWAKADPGVIFFDVINRRNVLEPAKGE 453

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVL 632
            + ++N C E  L     E   CNL SINL      ++     FD+D+ A  I+   + L
Sbjct: 454 KIRATNPCGEEPLY----EYESCNLASINLAKFVKYDEEGKPYFDWDEYAYVIQKVAKYL 509

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DN ID+N   + +   +    R IG+G+MG   AL  L I Y S E  +   ++ E+++F
Sbjct: 510 DNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNSKEGYDFMRKATEYLTF 569

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +A   SVE A++RG +  ++ + +  G  P++                   LPWDEL + 
Sbjct: 570 YAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEG----------YYHREVWTLPWDELVEE 619

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F  V+     ELK+
Sbjct: 620 IKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKK 679

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LW + ++  +  + GS+  +E IP+D++++  T+ +I  +  I + +  Q W+  + S
Sbjct: 680 RGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWLDHILAQANIQLWLTDSAS 739

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVP 927
             + + ++ + + +   Y  A+ +G K     R  S +    SVE    + V  K +A  
Sbjct: 740 KTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRQRVKAKPSAYA 799

Query: 928 V 928
           V
Sbjct: 800 V 800



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V        +R + ++ N   + V + +     
Sbjct: 5   KVMKRDGRIVPFDKERIKWAIQRAMLEV-------GVRDEKLL-NRVVRRVVKRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + HIE+IQD VE  LM+ G   + + Y+LYR++++++R
Sbjct: 57  GQVPHIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIR 96


>gi|238785707|ref|ZP_04629682.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238713392|gb|EEQ05429.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 761

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 207/792 (26%), Positives = 345/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V +L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPELYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A++       W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAISSEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       + +G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKLG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|18466787|ref|NP_569594.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506103|emb|CAD09989.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 771

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 218/801 (27%), Positives = 341/801 (42%), Gaps = 103/801 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  L K+R++                 Q  YP ++  +I   
Sbjct: 62  SAADLISPETPNYSQVAARLSLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106

Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           V   +  E ++ +    ++  L   +K +RD  F Y     L  +Y +   + G+  E P
Sbjct: 107 VSRGVYDEDLLKYYSQEEIAELGVYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166

Query: 318 QAFFMRVAMGL------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLS 369
           Q  +M V M L            + +    FY++ S+F     TP +  +G R P  Q S
Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFS 224

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L GI  A            G+G  +  +R LG+ I        GVIPFLK
Sbjct: 225 SCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLK 284

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                  + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L 
Sbjct: 285 HFQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLM 344

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +R+ +N   TLFSP +V  L+D +     +FE  Y  YE  AD    K  + I AV L+
Sbjct: 345 YRRLVRNENITLFSPHDVPGLYDAFFVDQDKFEELYLKYE--ADESIRK--KSIPAVDLF 400

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEET 597
             ++     TG  +I   D  N        +  VH SNLC EITL        + S+ E 
Sbjct: 401 STLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDSNGEI 460

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           A+C L + NL A         D L      AV  LD+++D   + +  A+      R++G
Sbjct: 461 ALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLG 515

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+  F   L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + 
Sbjct: 516 IGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYA 575

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           QG  P+D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I  
Sbjct: 576 QGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQITN 633

Query: 778 VSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            +  I+P    + VKS+  G    VV  F   + +   LWD                   
Sbjct: 634 STNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD------------------- 674

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD-- 886
           +PD+   +   A               QK+ DQA S N   D         P  K L+  
Sbjct: 675 MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDL 721

Query: 887 -FIYRQAWLMGLKTTYYLRSR 906
            F Y+Q    G+KT YY  +R
Sbjct: 722 LFAYQQ----GVKTLYYHNTR 738


>gi|256844763|ref|ZP_05550245.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613111|gb|EEU18318.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 674

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 179/627 (28%), Positives = 295/627 (47%), Gaps = 77/627 (12%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 90  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 148

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 149 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 208

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 209 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 268

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 269 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 325

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 326 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 382

Query: 579 VHSSNLCTEIT-LNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI  +N+ S                CNLGS+N+ A   +     DKL   + 
Sbjct: 383 IVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVS 438

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +V+ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 439 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 495

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEV 732
                  I++HA   S +LA+  GA+  FK S +          D+ V P      + E+
Sbjct: 496 TGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSP--KTDKIKEI 553

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +
Sbjct: 554 VAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETR 613

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ +N+                             D+ +     A+E+ 
Sbjct: 614 KEADLGRIYVPAYKINK-----------------------------DNYEYYEKGAYEVG 644

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE 879
           P  +I+  +  QK++DQ+ SL L++++
Sbjct: 645 PNAIIDITAAAQKYVDQSISLTLFVED 671


>gi|254230293|ref|ZP_04923682.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262393880|ref|YP_003285734.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha
           [Vibrio sp. Ex25]
 gi|151937190|gb|EDN56059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262337474|gb|ACY51269.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio sp. Ex25]
          Length = 760

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 215/799 (26%), Positives = 345/799 (43%), Gaps = 89/799 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y + +  T H+       +  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   + ++RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE       IK    + A+ ++  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F 
Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E + ++ + ASVELA+E+G   SF  + + +G+ PID
Sbjct: 522 YYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVELAKEQGKCPSFDETNYAKGLLPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDIDLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    VV  F   ELK     +  ++ ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEF--TELKD----NYELLWNIGSNDGY------------ 678

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWL 894
            +H                  QK++DQA S N   D PS         KKL      A+ 
Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEK 913
            G+KT YY  +R     E+
Sbjct: 724 FGVKTLYYHNTRDGAKDEQ 742


>gi|261211024|ref|ZP_05925314.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
 gi|260839999|gb|EEX66599.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
          Length = 760

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 217/801 (27%), Positives = 343/801 (42%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H              +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLFKH----------VTNMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|227328223|ref|ZP_03832247.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 761

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 215/794 (27%), Positives = 341/794 (42%), Gaps = 89/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I 
Sbjct: 5   LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+   
Sbjct: 351 EEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAGELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGA--INSLDDLEELAT---LAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD  A+ N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    VV  +   +     LW      D+  +DG             
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDSYELLW------DMPNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895
                         ++     QK++DQA S N   D    PSG    K+L      A+  
Sbjct: 678 -------------YLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKF 724

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 725 GVKTLYYQNTRDGA 738


>gi|16761203|ref|NP_456820.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141102|ref|NP_804444.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213161594|ref|ZP_03347304.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424146|ref|ZP_03357024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213612728|ref|ZP_03370554.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213646445|ref|ZP_03376498.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|25285839|pir||AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503502|emb|CAD07509.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136728|gb|AAO68293.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 761

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 210/792 (26%), Positives = 341/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V   L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVVACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   + +    +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 678 ------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|94676899|ref|YP_588830.1| ribonucleotide-diphosphate reductase subunit alpha [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220049|gb|ABF14208.1| ribonucleoside-diphosphate reductase, alpha subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 760

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 208/798 (26%), Positives = 348/798 (43%), Gaps = 95/798 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++  L +   DG     N  ++  ++  A  GL++VS   V   ++   YDG+  SD+  
Sbjct: 1   MSQSLLVTKRDGRKEPINLDKIHRVINWAADGLENVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++   T           E   LY ++  R 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAVLHLRKKAYGTF----------EPPTLY-DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           ++ G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKMGKYDQHLLKDYSFEEFTQMDKFINHWRDMDFAYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L  +   T +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFSSYPRTNRLDYIRRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R +G+ I G      G IPF K    
Sbjct: 228 IECGDSLNSINATSSAIVKYVSRRAGIGINAGRIRAIGSQIRGGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGIETNRVRYMDYGVQINKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N   TLFSP +V  L+D +     +FE  Y  YE+     +    R I AV L+  M+
Sbjct: 348 VNNDQITLFSPSDVPGLYDAFFADQNKFEQLYCQYEKDVSIRK----RSIKAVELFSLMM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  ++   D CN  SP   +V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYVQHVDHCNNHSPFDVNVAPIRQSNLCLEIILPTKPIEDINEENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L ++NL     N+  D+++L      AVR LD ++D   + +  A++     R +G+G++
Sbjct: 464 LSALNLGT--INSLDDFEELT---MLAVRALDALLDYQSYPLTSAQRGALNRRPLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNKLAKERGACPWFHETTYAQGIL 578

Query: 722 PIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PID+    L + V + L  +      W+ L+K +K  G+RNS   A+ P+ T + I   +
Sbjct: 579 PIDTYKKDLDSIVSEPLHYD------WESLRKDIKKSGLRNSTLSAMMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD----LWDEAMISDLKYHDGSIGNIE 835
             I+P   ++ +K++ +G   ++   +   ++  +    LWD                  
Sbjct: 633 NGIEPPRGHVSIKASKNG---ILRQVVPESVRLHNAYEFLWD------------------ 671

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFI 888
            +P++   +H                  QK++DQ+ S N   D    P G    K+L   
Sbjct: 672 -MPNNNGYLHLVGV-------------MQKFVDQSISANTNYDPSRYPYGKVPMKQLLKD 717

Query: 889 YRQAWLMGLKTTYYLRSR 906
              A+  G+KT YY  +R
Sbjct: 718 LLTAYKFGIKTLYYQNTR 735


>gi|215487451|ref|YP_002329882.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|215265523|emb|CAS09926.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 761

 Score =  237 bits (604), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 212/794 (26%), Positives = 344/794 (43%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E  
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMS 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDAIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  G+KT YY  +R
Sbjct: 722 YKFGVKTLYYQNTR 735


>gi|238794994|ref|ZP_04638590.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238725697|gb|EEQ17255.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 761

 Score =  237 bits (604), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 208/791 (26%), Positives = 345/791 (43%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFDH---------VSKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   ++  D ++LA     AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGA--IDSLDDLEELAV---LAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D ++ N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIS-NEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   +    + +D ++  ++ D+  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897
                       ++     QK++DQA S N   D    PSG    K+L       +  G+
Sbjct: 678 -----------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGV 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|312872655|ref|ZP_07732720.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311091697|gb|EFQ50076.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 725

 Score =  237 bits (604), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 199/696 (28%), Positives = 317/696 (45%), Gaps = 85/696 (12%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y++     +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDKLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDY-DKLASTIRTA 628
           SNLC+EI  +N+ SE               CNLGS+N+         DY +     +  +
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIA-----KAMDYSEHFEHLVANS 432

Query: 629 VRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D   
Sbjct: 433 IRALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFF 492

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR-- 740
              +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L      
Sbjct: 493 YATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFY 552

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P               
Sbjct: 553 IPSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP--------------- 597

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                 +V  ++ R    E M+  +      I N     ++ K     A+E+ P  +I+ 
Sbjct: 598 ------VVAPVETR---KEGMVGRIYVPAYKIDN-----NNYKYYQKGAYEVGPAAIIDI 643

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G
Sbjct: 644 VAAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEG 697

Query: 919 VDG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +    + V  TD             CT   EC+VC
Sbjct: 698 SENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|147669241|ref|YP_001214059.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
 gi|146270189|gb|ABQ17181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 599

 Score =  237 bits (604), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 305/648 (47%), Gaps = 97/648 (14%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHF 351
           ++L  RY    +  R IE P+  F RVA  +A  E      T+  +   EFY  +S   F
Sbjct: 22  RVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQAMSRLEF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  +   GD
Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISCK---GD 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               T+   +     D FM +V     + + +P                           
Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRSGEDYDIINPHT------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C E TL 
Sbjct: 233 GE--VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGCGEQTLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N     + +
Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +LA+ RG+
Sbjct: 347 KATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKLAEVRGS 406

Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           + +++GS++D  G  P                                   MRN+ C +I
Sbjct: 407 FPAYEGSMYDVPGGRP-----------------------------------MRNATCTSI 431

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821
           APT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R+ +      E ++
Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSRELFEKLV 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
           S    HD     +E IPD LK++  TA  I P W I   +  QK+ D A S  + +  E 
Sbjct: 492 SSNHLHD-----MECIPDWLKRLLVTAHCIRPEWHIRIQAAFQKYTDNAVSKTVNFPHEA 546

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV--EKSTLKGVDGKLN 924
           +   +  ++  A+  GLK  T Y   SR+A  +   +S +K VD  L+
Sbjct: 547 TRADMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQYLD 594


>gi|325912229|ref|ZP_08174626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
 gi|325475888|gb|EGC79057.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
          Length = 725

 Score =  237 bits (604), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 199/695 (28%), Positives = 315/695 (45%), Gaps = 83/695 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      
Sbjct: 84  YDQHFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    
Sbjct: 143 IIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD
Sbjct: 203 TNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIA 521
            ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I 
Sbjct: 263 TKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISIT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+      +IK    ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  
Sbjct: 320 KE-YDNLVANPKIKK-TYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ SE               CNLGS+N+    A    D +     +  ++
Sbjct: 378 SNLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNI----AKAMDDSEHFEHLVANSI 433

Query: 630 RVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D    
Sbjct: 434 RALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR--- 740
             +++A  AS +LAQ+ GAYS FK S +  G +       D++   A ++D L       
Sbjct: 494 ATAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P                
Sbjct: 554 PSREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQP---------------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R    E M+  +      I N      + K     A+E+ P  +I+  
Sbjct: 598 -----VVAPVETR---KEGMVGRIYVPAYKIDNT-----NYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGS 698

Query: 920 DG-KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    + V  TD             CT   EC+VC
Sbjct: 699 ENLAADEVIKTD----------KFKCTGSKECQVC 723


>gi|260772918|ref|ZP_05881834.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
 gi|260612057|gb|EEX37260.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
          Length = 760

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 216/790 (27%), Positives = 338/790 (42%), Gaps = 85/790 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVIEWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            SS  LI +E P+Y  + AR  +  LR++     Y+ P    H        +Y    +E+
Sbjct: 64  KSSADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPALYDHVSAMVAKGKYDSHLLED 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
                    S  +F L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 123 --------YSAEEFAL--MDTFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YLLVAACLFAKYPKATRLDFVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYRRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + +   EFE  Y NYE       IK  R + A+ ++  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFQDQDEFERLYVNYENDP---SIKK-RTVKALEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       D+++LA  +   VR LD ++D   + +  A+KS    R +G+G++ + 
Sbjct: 467 FNLGA--IEKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PID
Sbjct: 522 YYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVLLAKEQGRCPAFNETNYAKGLLPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTLC-DEPLHYDWDSLRNEIMEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + VK++  G    VV  F+  +     LW      ++  +DG              
Sbjct: 638 PRGYVSVKASKDGILKQVVPEFIKLKENYELLW------NIGSNDGY------------- 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896
           +H                  QK++DQA S N   D     SG    KKL      A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKYG 725

Query: 897 LKTTYYLRSR 906
           +KT YY  +R
Sbjct: 726 VKTLYYHNTR 735


>gi|261822456|ref|YP_003260562.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261606469|gb|ACX88955.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 761

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 212/793 (26%), Positives = 345/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I 
Sbjct: 5   LLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKSSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + +E G
Sbjct: 65  AAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPRETRLDYVKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+   
Sbjct: 351 EEITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  D + LA+    AVR LD ++D   + I+ A++     R +G+G++ F 
Sbjct: 467 FNLGA--INSLDDLEDLAT---LAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       RD  A+ N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----RDLDAICNEPLHLDWETLRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G   ++   +      +D ++  ++ ++  +DG              
Sbjct: 637 PPRGHISVKASKDG---ILRQVVPEYETLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L      A+  G
Sbjct: 678 ------------YLQLVGVMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|293415527|ref|ZP_06658170.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
 gi|291433175|gb|EFF06154.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
          Length = 761

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 212/796 (26%), Positives = 344/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +  G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC---- 600
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C    
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 601 -NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NLG+IN L          D+L      AVR LD ++D   + I  AK+     R +G+G
Sbjct: 467 FNLGAINSL----------DELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 577 ILPIDT---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G   ++   + +     D ++  ++ ++  +DG          
Sbjct: 633 NGIEPPRGYVSIKASKDG---ILRQVVPDYEHLHDAYE--LLWEMPGNDG---------- 677

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQA 892
                            ++     QK+IDQ+ S N   D    PSGK    +L      A
Sbjct: 678 ----------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKFGVKTLYYQNTRDG 737


>gi|285803183|pdb|2X3S|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803184|pdb|2X3S|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803185|pdb|2X3S|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662329|pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662330|pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662331|pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 189/673 (28%), Positives = 302/673 (44%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNL  EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|317492552|ref|ZP_07950979.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919302|gb|EFV40634.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 761

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 218/815 (26%), Positives = 347/815 (42%), Gaps = 96/815 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVLDWAAEGLSNVSVSQVELRSHIQFYDGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTPEEFAQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      ++ R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRDTRLSYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE  AD    K  +K+ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYMQYE--ADDSIRK--QKVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL     N+  D ++LA     AVR LD ++D   + I  AK+     R +G+G++ + 
Sbjct: 467 FNL--GVINSLDDLEELAV---LAVRALDALLDYQDYPILAAKRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +   N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDTICNEPLHYDWEALRNDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++                                 DG +  +    D LK 
Sbjct: 637 PPRGHISIKAS--------------------------------KDGILRQVVPEYDRLKN 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895
            +   +E+ +    ++     QK+IDQ+ S N   D    PSG    K+L      A+  
Sbjct: 665 AYELLWEMPNNDGYLQLVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           G KT YY  +R          + V   L A P  D
Sbjct: 725 GAKTLYYQNTRDGA-------EDVQDDLQATPEDD 752


>gi|330941360|gb|EGH44212.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 202

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 145/203 (71%), Gaps = 17/203 (8%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY
Sbjct: 2   APTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKY 61

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           +DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD
Sbjct: 62  YDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLD 121

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP----- 941
             YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P     
Sbjct: 122 VTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEA 179

Query: 942 ---------SSCTSD-TECEVCQ 954
                     +C  D  +CE CQ
Sbjct: 180 APAGPAPVPKACAIDEPDCEACQ 202


>gi|149190929|ref|ZP_01869192.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
 gi|148835284|gb|EDL52258.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
          Length = 763

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 220/798 (27%), Positives = 335/798 (41%), Gaps = 85/798 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V  + +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVIAWAAEGLNNVSVSQVELKAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI E  P+Y  + AR  +  LR++     Y+ P    H            + +E 
Sbjct: 64  KSAADLISEDAPDYQYLAARLAIFHLRKKAYGQ-YEPPALFDH----------VSKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E     +L  L + + + RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDAHLLEDYTKSELDELDSYIDHTRDHDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q 
Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYARLVQG 350

Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + +   EFE  Y  YE       IK    + AV L+  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFEDQDEFERLYVKYENDP---SIKK-ETVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       + D L       VR LD ++D   + +  A KS    R +G+G++ + 
Sbjct: 467 FNLGA-----INELDDLKDLSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID
Sbjct: 522 YYLAKNGVKYSDGSANNLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +   +L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TY----KNDVDLVCDEPLHYDWDALRSEIMEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + VK++  G    VV  F   +     LW+             IGN +        
Sbjct: 638 PRGYVSVKASKDGILKQVVPDFANLKENYELLWN-------------IGNNDGY------ 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896
           +H                  QK++DQA S N   D     SG    KKL      A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPSVYESGKVPMKKLLQDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKS 914
           +KT YY  +R     ++S
Sbjct: 726 VKTLYYHNTRDGAKDDQS 743


>gi|238760195|ref|ZP_04621341.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238701574|gb|EEP94145.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 761

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 207/792 (26%), Positives = 342/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYSAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           M V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 MLVSACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     EFE  Y  YE+  +  +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYEAFFADQDEFERLYTQYEQDDNIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIES-----LDDLEELAELAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|270262778|ref|ZP_06191049.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270043462|gb|EFA16555.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 762

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 184/673 (27%), Positives = 303/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYNSEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFANQDEFERLYTLYEKDDSIRQ----KRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D ++LA+    AVR LD ++D   + I+ A +     R +G+G++ + 
Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANSLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +V      +      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TYKKDLDV----ICDEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
              ++ +K++  G
Sbjct: 638 PRGHISIKASKDG 650


>gi|289526538|pdb|2X59|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526539|pdb|2X59|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526540|pdb|2X59|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662336|pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662337|pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662338|pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 189/673 (28%), Positives = 302/673 (44%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNL  EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   NN    D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--INN---LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|56807675|ref|ZP_00365559.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 587

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 182/638 (28%), Positives = 295/638 (46%), Gaps = 97/638 (15%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  NSG  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R 
Sbjct: 10  FQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRE 69

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++  
Sbjct: 70  IGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKREN 129

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527
            D++ R   +     IPD+  +   +N    LFSP    D+   YGK+  +I+  E Y++
Sbjct: 130 ADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEEYDK 186

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 IK    ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+E
Sbjct: 187 LLANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSE 245

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD-- 633
           I   S+              E   CNLGSIN+    A    D       I T++R LD  
Sbjct: 246 IAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----DAPHFEQLITTSIRALDRV 301

Query: 634 -NVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+NC  ++E    +NH   A+GLG M     L   HI Y + EAV+  D     ++
Sbjct: 302 SRVSDLNCAPSVETGNAANH---AVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMA 358

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------- 743
           ++A  AS +LA+E+GA++ F  S +  G +        A+   E A  +T++        
Sbjct: 359 YYAFKASCQLAKEKGAFAGFSLSTYADGTY-------FAKYLQEDAKPQTAKVATLLQDY 411

Query: 744 ---LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
              LP    W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S
Sbjct: 412 GFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGS 471

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                V ++ +N+            ++  Y++                   A+E+ P  +
Sbjct: 472 LGRIYVPAYQINQ------------ANYTYYERG-----------------AYEVGPKAI 502

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  
Sbjct: 503 IDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR------QDV 556

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L G +       VT P +S           + TEC+ C
Sbjct: 557 LAGSEQYDEDSLVTAPGASDE---------TTTECQSC 585


>gi|269963957|ref|ZP_06178266.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
 gi|269831300|gb|EEZ85450.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
          Length = 760

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 217/798 (27%), Positives = 345/798 (43%), Gaps = 97/798 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLYNH----------VARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ V+  L      KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE       IK    + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           D+    + L+ E  +EL  +      WD L++ +   G+RNS   A+ P+ T + I   +
Sbjct: 581 DTYKKDVDLICE--EELHYD------WDSLRQEIMEHGLRNSTLTALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + VK++  G    VV  F   ELK     +  ++ ++  +DG         
Sbjct: 633 NGIEPPRGFVSVKASKDGILKQVVPDF--TELKD----NYELLWNIGSNDGY-------- 678

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYR 890
                +H                  QK++DQA S N   D PSG        KKL     
Sbjct: 679 -----LHLVGI-------------MQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLL 719

Query: 891 QAWLMGLKTTYYLRSRSA 908
            A+  G+KT YY  +R  
Sbjct: 720 TAYKFGVKTLYYHNTRDG 737


>gi|238753721|ref|ZP_04615082.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238707957|gb|EEQ00314.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 761

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 203/792 (25%), Positives = 340/792 (42%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H           + ++ G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFDH---------VSKMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     D   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEDFQQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRHTRMDYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLQGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +    ++FE  Y  YE+ +   +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQEQFERLYTQYEQDSSIRQ----QRVKAVELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDPNGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D+L      AVR LD ++D   + IE A++     R +G+G++ +  
Sbjct: 468 NLGAIDS-----LDELEDLANLAVRALDALLDYQDYPIEAARRGAMGRRTLGVGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNHLAREQGACEWFNETTYSQGILPIDT 582

Query: 726 IGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               L  + DE          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YKKDLDAISDE-----PLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   +    + ++ ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWEMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMGL 897
                       ++     QK+IDQA S N   D    PSG    K+L       +  G+
Sbjct: 678 -----------YLQLVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTTYKFGV 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|319760601|ref|YP_004124539.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039315|gb|ADV33865.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 763

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 213/822 (25%), Positives = 358/822 (43%), Gaps = 108/822 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N +++  ++  A  GL+ +S   V   ++   Y+G+  SD++  +I 
Sbjct: 5   LLVTKRDGHHEPINLEKIHRVINWAAQGLEKISVSQVELRSHIQFYNGIKTSDIQETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI KE P+Y  + AR  +  LR++       +P K   H +         R ++ G
Sbjct: 65  AAADLISKEEPDYQYLAARLSVFHLRKKAYGQF--EPPKLYDHVL---------RLVKIG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLNDYTHNEFEQMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           +  A  L  K  +  +     +FYN +S+F    +TP +  SG R P  Q SSC L    
Sbjct: 174 ILTAACLFAKYPKNTRMDYIKKFYNAISTFKISLATPIM--SGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R +G+ I        G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVAQRAGIGINAGRIRAIGSPIRNGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH+++E  L L+ N G +  R   ++    I  L  +R+    
Sbjct: 292 CSQGGVRGGAATLFYPIWHLEIENLLVLKNNRGVESNRIRHLDYGVQINKLMYQRLITGK 351

Query: 498 GWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V DL++ +  +   F+  Y  YE      ++    KI A+ L+  M+    
Sbjct: 352 HITLFSPADVPDLYESFFSDQNLFDYLYHKYENDHKIRQL----KIKAIELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  +  SNLC EITL        N ++ E A+C L + 
Sbjct: 408 STGRIYIQHTDHCNTHSPFNSALAPIRQSNLCLEITLPTKPLNNINDTNGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     NN  D  +L++ I   VR LD ++D   + +  A+ S    R++G+G++ +  
Sbjct: 468 NLGN--LNNLDDLSELSTLI---VRALDALLDYQSYPVLAAQYSAKNRRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +   + E I ++ + AS  LA+E+GA + F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANTLTHHTFEAIQYYLLKASNLLAKEKGACAWFDDTSYAQGILPIDT 582

Query: 726 IGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D +  ++   R  W+EL+ ++K  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDYIISEPLRYNWEELRNQIKQYGLRNSTVSALMPSETSSQISNSTNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G    V                            + N E++       
Sbjct: 638 PRGYISIKASKDGILRQV----------------------------VPNCEKL------- 662

Query: 845 HATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDEPSG--------KKL--DF 887
            A+ +E+  +W        +E     QK+IDQ+ S N+  D PS         K+L  D 
Sbjct: 663 -ASNYEL--LWNIPNNQGYLELVGIMQKFIDQSISTNMNYD-PSCFPESKVPIKQLLSDL 718

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           +Y  A+ +G+KT YY  +R   S    T K ++   N  P T
Sbjct: 719 LY--AYKLGIKTLYYHNTRDGFS---ETQKKIEYNNNHQPNT 755


>gi|90581240|ref|ZP_01237038.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
 gi|90437611|gb|EAS62804.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
          Length = 755

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 213/806 (26%), Positives = 353/806 (43%), Gaps = 89/806 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E  P+Y  + AR  +  LR++     ++ P+         LY E+    + +
Sbjct: 64  KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LY-EHVKNLVAK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E   + +   + N + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDGHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ +A  L   +  KE R      FY+  +S  F  S PT   SG R P  Q SSC L  
Sbjct: 173 YVLIAAAL-FNKYPKETRLDYIKRFYD--ASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +    IK    I A+ L+  ++  
Sbjct: 350 GESISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDS---SIKR-ETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L      N   E  E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     ++ +  +     R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK--KDINNICSAEL--RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G   ++   +    K +D ++  ++ ++  +DG              
Sbjct: 637 PPRGFVSVKASKDG---ILKQVVPEYAKYKDNYE--LLWNIGNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWL 894
                        ++     QK+IDQA S N   D  + +G K+       D +   A+ 
Sbjct: 678 ------------YLQLVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLL--NAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920
           +G+KT YY  +R   S  +  +   D
Sbjct: 724 LGVKTLYYHNTRDGASDSQGDMAADD 749


>gi|157371508|ref|YP_001479497.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323272|gb|ABV42369.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 762

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 183/673 (27%), Positives = 305/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      ++ R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRDTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRQ----KRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D ++LA+    AVR LD ++D   + I+ A +     R +G+G++ + 
Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIKAAHRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANALTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +V  +  ++      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TYKKDLDVICQEPLH----YDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
              ++ +K++  G
Sbjct: 638 PRGHISIKASKDG 650


>gi|225869035|ref|YP_002744983.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702311|emb|CAX00108.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 724

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 317/680 (46%), Gaps = 80/680 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y++ F+F   +G    Y  Y L  ++GS  +  + F  R  M              +  +
Sbjct: 84  YQQKFSFLSLMGAMKFYQSYALKSLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+   
Sbjct: 142 QILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FL
Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522
           D ++   D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+  +IA 
Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+R      IK    ISA  L++ +  + FE+G+P++ F D  N R+P    G +  
Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S++             E   CNLGSIN +A    +   +++L   I T++
Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAAGFEQL---IATSI 433

Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LD+V    D++C  ++EK   +NH   A+GLG M     L   HI Y S EAV+  D 
Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737
               ++++A  AS +LA+E+GA++ F+ S +  G +               +A + +   
Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+     
Sbjct: 551 FRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               V ++               ISD               D+       A+E+ P  +I
Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R      +  L
Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDVL 695

Query: 917 KGVDG--KLNAVPVTDPNSS 934
           +G +   +   VP TD N+S
Sbjct: 696 EGSEQYEEDTIVPFTDTNAS 715


>gi|52788093|ref|YP_093921.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pestis]
 gi|145597235|ref|YP_001154699.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|229896975|ref|ZP_04512134.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
 gi|52538022|emb|CAG27447.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis]
 gi|145213003|gb|ABP42408.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|229700011|gb|EEO88051.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
          Length = 771

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 220/803 (27%), Positives = 340/803 (42%), Gaps = 107/803 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY +V AR  L K+R++                 Q  YP ++  +I   
Sbjct: 62  SAADLISPETPNYLQVAARLNLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106

Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           V   +  E ++ +    ++  L   +K +RD  F Y     L  +Y +   + G+  E P
Sbjct: 107 VSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166

Query: 318 QAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--Q 367
           Q  +M V M        G A K   +  R   FY++ S+F     TP +  +G R P  Q
Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSLPTPIM--AGVRTPTRQ 222

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
            SSC L    D L GI  A            G+G  +  +R LG+ I        GVIPF
Sbjct: 223 FSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPF 282

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK       + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  
Sbjct: 283 LKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINR 342

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVA 544
           L  +R+  N   TLFSP +V  L+D +     +FE  Y  YE  AD    K  + I AV 
Sbjct: 343 LMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE--ADESIRK--KSIPAVD 398

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSE 595
           L+  ++     TG  +I   D  N        +  VH SNLC EITL        +  + 
Sbjct: 399 LFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNG 458

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E A+C L + NL A         D L      AV  LD+++D   + +  A+      R+
Sbjct: 459 EIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRS 513

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+  F   L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + 
Sbjct: 514 LGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTK 573

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + QG  P+D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I
Sbjct: 574 YAQGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQI 631

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              +  I+P    + VKS+  G    VV  F   + +   LWD                 
Sbjct: 632 TNSTNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD----------------- 674

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD 886
             +PD+   +   A               QK+ DQA S N   D         P  K L+
Sbjct: 675 --MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFPGDKVPMMKLLE 719

Query: 887 ---FIYRQAWLMGLKTTYYLRSR 906
              F Y+Q    G+KT YY  +R
Sbjct: 720 DLLFAYQQ----GVKTLYYHNTR 738


>gi|238797462|ref|ZP_04640961.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238718733|gb|EEQ10550.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 761

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 209/793 (26%), Positives = 343/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H  + +    + +++ E 
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A    E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           M V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 MLVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAKEQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDAISDE-----PLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + ++ ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|313672578|ref|YP_004050689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939334|gb|ADR18526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 762

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 174/617 (28%), Positives = 294/617 (47%), Gaps = 79/617 (12%)

Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYNLLSSF 349
            + +L  RY    + G  +E P+  F RVA+ +A       K+ +  + A +FY+++   
Sbjct: 18  AITVLKKRYLKRDSEGKLLETPKEMFQRVAINIAQADLNYNKDADIAETARKFYDIMVDL 77

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  ++ +R 
Sbjct: 78  KFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSFSRLRP 137

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
               +  T G S G I F+ V +     + QGG R+GA    L   H D+ +F+  +K  
Sbjct: 138 KDDVVKTTKGVSSGPISFISVFDAATEVIKQGGTRRGANMGILRVDHPDIMDFIYAKK-- 195

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D+ +  + N +  + + FMK V +   + L +P +                       
Sbjct: 196 --DKTKLTNFNLSVGLTEEFMKAVEEGKDFELINPRDK---------------------- 231

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                KV  K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N C E  
Sbjct: 232 -----KVVGKLNARKVFDEMVQLAWEGGDPGIIFLDRINKANPTPKEGEIESTNPCGEQP 286

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL     + + D+++L   I T+V  LDNVID+N + I + +  
Sbjct: 287 LLPYES----CNLGSINLAKFIKDKKIDWEELKYVIHTSVHFLDNVIDMNKYPIPEIEYM 342

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              +R IGLGLMG+  AL LL IPY S E +E+A++ M+F +  +  AS +LA+ RG++ 
Sbjct: 343 TKKNRKIGLGLMGWADALALLEIPYNSYEGIELAEKVMKFFNDESKIASSKLAEVRGSFP 402

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+ S++ +  F                                    +RN+    IAPT
Sbjct: 403 NFEDSIYPEMGFKY----------------------------------LRNATTTTIAPT 428

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  ++P +   + ++ M     V VN +    +K+  ++ E ++  +    
Sbjct: 429 GTISIIGNASSGVEPYFAIAFYRNVMDNTKLVEVNPYFKQAVKEYGIYSEELMEKIA-EK 487

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           G + +I  +P+ LKKI  TA EI P+W ++  +  QK+ D A S  + +  + + + +  
Sbjct: 488 GILKDIPEVPEKLKKIFVTAHEISPIWHVKMQAAFQKYTDNAVSKTVNFSHDATVEDVKN 547

Query: 888 IYRQAWLMGLKTTYYLR 904
           +Y  A+ +G K     R
Sbjct: 548 VYLLAYKLGCKGITIYR 564


>gi|167036756|ref|YP_001664334.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115179|ref|YP_004185338.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855590|gb|ABY93998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928270|gb|ADV78955.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 770

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 289/625 (46%), Gaps = 84/625 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVE--FYNLLSSFHF 351
           ++L  RY     NG  IE  +  F RVA  +A    + +   +  AV+  FY+++    F
Sbjct: 9   KVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFYDMMVDLDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKK---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V ++  + L  P                           
Sbjct: 185 DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTG------------------------ 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N C E  L 
Sbjct: 221 ---KVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTNPCGEQPLL 277

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSINL       +     DYDKL  T+  AV  LDNVID N + + + +
Sbjct: 278 PYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDANKYPLPQIE 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS++LA++RG 
Sbjct: 334 EMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASIKLAEQRGT 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S++ +                                     I +RN+    IA
Sbjct: 394 FGFYDKSIYKK-----------------------------------MGIKIRNATTTTIA 418

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I G S  I+P +     ++ M   +   VN        +R  + E ++ ++  
Sbjct: 419 PTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSEELMREIAR 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             GS+ +I+ IP+D+K++   A +ID  W ++  +  QK +D A S  + + +E + + +
Sbjct: 479 R-GSLKDIKGIPEDVKRVFVIAHDIDHEWHVKMQAAFQKHVDNAVSKTVNFRNEATVEDV 537

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
              Y  A+ +G K     R  S  S
Sbjct: 538 RRTYLLAYKLGCKGVTIYRDGSRES 562


>gi|37679428|ref|NP_934037.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus YJ016]
 gi|37198172|dbj|BAC94008.1| ribonucleotide reductase, alpha subunit [Vibrio vulnificus YJ016]
          Length = 767

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 222/803 (27%), Positives = 346/803 (43%), Gaps = 97/803 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 11  QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 71  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 120 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 179

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 180 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 237 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 297 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 356

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE           +K +  AL  +M T+
Sbjct: 357 GGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPS------IKKETVKAL--EMFTL 408

Query: 553 LFE----TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAV 599
           L +    TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+
Sbjct: 409 LMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIAL 468

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A   N   D  +L+  +   VR LD ++D   + +  A KS    R +G+G
Sbjct: 469 CTLSAFNLGA--INTLDDLKELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVG 523

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G
Sbjct: 524 VINYAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKG 583

Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + PID+       +D +L  +      WD L+  +   G+RNS   A+ P+ T + I   
Sbjct: 584 LMPIDTYK-----KDIDLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNA 638

Query: 779 SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           +  I+P    + VK++  G    VV  F+  ELK     +  ++ ++  +DG        
Sbjct: 639 TNGIEPPRGYVSVKASKDGILKQVVPDFI--ELKN----NYELLWNIGSNDGY------- 685

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYR 890
                 +H                  QK++DQA S N   D     SG    KKL     
Sbjct: 686 ------LHLVGI-------------MQKFVDQAISANTNYDPARYESGKVPMKKLLQDLL 726

Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913
            A+  G+KT YY  +R     E+
Sbjct: 727 TAYKFGVKTLYYHNTRDGAKDEQ 749


>gi|262402401|ref|ZP_06078962.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
 gi|262351183|gb|EEZ00316.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
          Length = 760

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 216/801 (26%), Positives = 342/801 (42%), Gaps = 91/801 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H              +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLFKH----------VTNMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D + +   EFE  Y  YE       IK  + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGA--IQSLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKS 914
             G+KT YY  +R     E++
Sbjct: 723 KFGVKTLYYHNTRDGAKDEQT 743


>gi|27366310|ref|NP_761838.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus CMCP6]
 gi|320156820|ref|YP_004189199.1| ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Vibrio vulnificus MO6-24/O]
 gi|27362511|gb|AAO11365.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           vulnificus CMCP6]
 gi|319932132|gb|ADV86996.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 760

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 222/803 (27%), Positives = 346/803 (43%), Gaps = 97/803 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE           +K +  AL  +M T+
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPS------IKKETVKAL--EMFTL 401

Query: 553 LFE----TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAV 599
           L +    TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+
Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIAL 461

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A   N   D  +L+  +   VR LD ++D   + +  A KS    R +G+G
Sbjct: 462 CTLSAFNLGA--INTLDDLKELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G
Sbjct: 517 VINYAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKG 576

Query: 720 VFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + PID+       +D +L  +      WD L+  +   G+RNS   A+ P+ T + I   
Sbjct: 577 LMPIDTYK-----KDIDLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNA 631

Query: 779 SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           +  I+P    + VK++  G    VV  F+  ELK     +  ++ ++  +DG        
Sbjct: 632 TNGIEPPRGYVSVKASKDGILKQVVPDFI--ELKN----NYELLWNIGSNDGY------- 678

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYR 890
                 +H                  QK++DQA S N   D     SG    KKL     
Sbjct: 679 ------LHLVGI-------------MQKFVDQAISANTNYDPARYESGKVPMKKLLQDLL 719

Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913
            A+  G+KT YY  +R     E+
Sbjct: 720 TAYKFGVKTLYYHNTRDGAKDEQ 742


>gi|42557734|emb|CAF28708.1| putative ribonucleotide reductase alpha subunit [uncultured
           crenarchaeote]
          Length = 906

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 288/585 (49%), Gaps = 62/585 (10%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           R VE+YNL+ S  F+ +TPTL N+G +  QLS+CF+  + DD+ GI  +  + AM+ K  
Sbjct: 259 RIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSACFVLDMKDDMSGIMKSSTDAAMIFKSG 318

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G +++ +R  G  +  T+G + G I F+++ +     V QGGKR+GA    +E+WH 
Sbjct: 319 GGVGINYSNLRPEGDIVASTSGVASGPISFMRIIDTITDVVKQGGKRRGANMGIMESWHP 378

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+E+F+                 TA   P +F         W+ F    +++ +  Y  +
Sbjct: 379 DIEKFV-----------------TAKTKPGVFENFNVSVGIWSDFWQSIINENNHKYNLK 421

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576
                E   +Q D  ++      SA   W+        +  P + F D  N  +P  +V 
Sbjct: 422 NPTTQEPI-KQIDSHQLLDLITFSA---WK--------SAEPGVIFFDNINKYNPCINVK 469

Query: 577 -GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAV 629
            G + ++N C E +L         CNLGSINL A+F        ++FD+ +    IR + 
Sbjct: 470 EGPLRATNPCGEQSLYPYES----CNLGSINL-ANFVKRSVDGKHEFDWQRYEQAIRLST 524

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LDNVID+N + +E+ + +    R IGLG+MG    L  L IPY S E  +  +   E 
Sbjct: 525 RFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLGIPYNSKEGYDFMNRVAEA 584

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQG-VFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +S++++  SV +A+ R  +  F  + + +G + P+     + +        R     WD 
Sbjct: 585 LSYYSMEESVAIAKARDPFPLFNQTDYVEGKMIPVAGYYEIPK--------RYHSYDWDS 636

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L ++++  G+RNS    IAPT T++ I   S  ++P +  ++ K    G F   N    N
Sbjct: 637 LIEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKRVTVGRFFYTNRIFEN 696

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            LK+  L+++ +++ +  + GS+  +  IP+ L+KI  TA ++     + + +  QKWI 
Sbjct: 697 ILKENGLYNDEILTKIANNYGSVRGLPEIPEWLQKIFVTAIDVHWTDHLMAQAVWQKWIS 756

Query: 869 Q--AQSLNLYLDEPSGKKLDFIYRQAWL----MGLKTTYYLRSRS 907
              A+++N+    PS   ++ I + A+L    MGLK     R  S
Sbjct: 757 NAIAKTINM----PSDVTVEDI-KAAYLLSHEMGLKGVTVYRDGS 796



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 10/103 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK- 88
           Q+ KR+ G+  F+ SKIS AI KA MA  GK  S+      + + L+E+ V ++ Q    
Sbjct: 21  QIRKRDKGLVDFNNSKISNAIYKALMAA-GKADSK------LAERLSEKVVQKMDQQFSI 73

Query: 89  --SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +  +ED+QD VE  L++ G  +  + Y+LYR ER  VR
Sbjct: 74  LDTNRVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVR 116


>gi|45478634|ref|NP_995490.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|45357287|gb|AAS58681.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis biovar Microtus str. 91001]
          Length = 771

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 220/803 (27%), Positives = 340/803 (42%), Gaps = 107/803 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY +V AR  L K+R++                 Q  YP ++  +I   
Sbjct: 62  SAADLISPETPNYLQVAARLNLFKIRKDAFG--------------QYDYPNFY-NHIVSN 106

Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           V   +  E ++ +    ++  L   +K +RD  F Y     L  +Y +   + G+  E P
Sbjct: 107 VSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGP 166

Query: 318 QAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--Q 367
           Q  +M V M        G A K   +  R   FY++ S+F     TP +  +G R P  Q
Sbjct: 167 QQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSLPTPIM--AGVRTPTRQ 222

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
            SSC L    D L GI  A            G+G  +  +R LG+ I        GVIPF
Sbjct: 223 FSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPF 282

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LK       + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  
Sbjct: 283 LKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINR 342

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVA 544
           L  +R+  N   TLFSP +V  L+D +     +FE  Y  YE  AD    K  + I AV 
Sbjct: 343 LMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE--ADESIRK--KSIPAVD 398

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSE 595
           L+  ++     TG  +I   D  N        +  VH SNLC EITL        +  + 
Sbjct: 399 LFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNG 458

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E A+C L + NL A         D L      AV  LD+++D   + +  A+      R+
Sbjct: 459 EIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRS 513

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+  F   L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + 
Sbjct: 514 LGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTK 573

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + QG  P+D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I
Sbjct: 574 YAQGQLPVDHYRKTLDTNPETSFEL--KMPWEELRGRIREHGLRNSTLTAQMPCETSSQI 631

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              +  I+P    + VKS+  G    VV  F   + +   LWD                 
Sbjct: 632 TNSTNGIEPPRGPVSVKSSKDGIVKMVVPDFAQLKDQYEYLWD----------------- 674

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLD 886
             +PD+   +   A               QK+ DQA S N   D         P  K L+
Sbjct: 675 --MPDNRGYLTKVAI-------------IQKFFDQAISANTNYDPTRFLAIRFPMMKLLE 719

Query: 887 ---FIYRQAWLMGLKTTYYLRSR 906
              F Y+Q    G+KT YY  +R
Sbjct: 720 DLLFAYQQ----GVKTLYYHNTR 738


>gi|206602949|gb|EDZ39429.1| Ribonucleotide reductase [Leptospirillum sp. Group II '5-way CG']
          Length = 732

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 175/621 (28%), Positives = 282/621 (45%), Gaps = 86/621 (13%)

Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMC 353
           L++L  RY        + E P+  F R+A  +A    + +E+E  A E+Y  ++S  F+ 
Sbjct: 14  LKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFMASLDFLP 73

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ +R  GA 
Sbjct: 74  NSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSRLRPKGAV 133

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +     D 
Sbjct: 134 VRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCKM----DL 189

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  + N +  I D+FMK V ++  + L +P     +  L  +E                
Sbjct: 190 TQVTNFNISVAITDVFMKAVKEDGEYDLIAPHNGEVVGKLRARE---------------- 233

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             VF KI+  A         +  G P + F D  N  +P        ++N C E  L   
Sbjct: 234 --VFDKIAHNA---------WANGEPGLFFIDTANRANPTPSRWTYEATNPCGEQVLGPY 282

Query: 594 SEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 CNLGSINL  H       N + D+++L  ++  AVR LDNV+D N   I +   
Sbjct: 283 ES----CNLGSINLERHVRSSATGNPEVDWERLGRSVYLAVRFLDNVVDANRFPIPELAA 338

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +LA+  G  
Sbjct: 339 VNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDLAKVHGP- 397

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                       FP                       ++++  R      RNS+ + IAP
Sbjct: 398 ------------FPY----------------------YEDIGTR-----KRNSHLLTIAP 418

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYH 827
           T TI+ I   S   +P +  ++ K+ M G        +   + +R+  W + +   +  +
Sbjct: 419 TGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEVVARREGFWSDGLAEKIVQN 478

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
            GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E + + ++
Sbjct: 479 HGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQEATVEDVE 538

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
             Y  ++ +G K     R  S
Sbjct: 539 DAYLLSFELGCKGITVYRDGS 559


>gi|119387082|ref|YP_918137.1| ribonucleoside-diphosphate reductase, alpha subunit [Paracoccus
           denitrificans PD1222]
 gi|119377677|gb|ABL72441.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Paracoccus denitrificans PD1222]
          Length = 708

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 193/661 (29%), Positives = 302/661 (45%), Gaps = 70/661 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y R F F  +LG    Y  Y L     R  +E  +   + VA+ LA  +   E  A+
Sbjct: 86  DAAYARKFRFPTFLGAFKYYTSYTLKTRDGRRYLERYEDRVVMVALALARGD---EDLAM 142

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F   + S  F  +TPT  N+G +   +L SCFL  + D++  I   +     L+K  GG
Sbjct: 143 RFMEEILSGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 202

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 203 VALMLTNLREAGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 262

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   E  
Sbjct: 263 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEDMYLFSPHDVEKVYGLPFSEIS 322

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+  +KI+A A ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 323 VT-EKYAEMVDDKRIRK-KKINARAFFQTLAEIQFESGYPYIMFEDTVNRANPV--AGRI 378

Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI  +N +SE               CNLGS+N+ A       D     +T+  
Sbjct: 379 SMSNLCSEILQVNEASEFDEDLGYRHLGTDISCNLGSLNIAA-----TMDGPDFGATVEA 433

Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V +++    +   ++ N    A+GLG M     L    I Y SPE VE     
Sbjct: 434 AIRALTAVSEMSAIEAVPSIRRGNDEAHAVGLGQMNLHGFLARERIHYGSPEGVEFTSVY 493

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV-RDELAMN 739
              +++HAI AS  LAQE+G  +  F  S +  G F       D +  L +V R    ++
Sbjct: 494 FAAVAYHAIRASNLLAQEKGRTFKDFDKSKYADGSFFDKYVAQDWLPTLPDVARVFEGVS 553

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798
             +R  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + + K    G 
Sbjct: 554 LPTREDWAALRESVMRHGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKIEIRKEGKIGR 613

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                +F+ NE             +L Y+                    A+EI P  +I+
Sbjct: 614 VYYPAAFMSNE-------------NLDYY------------------RDAYEIGPEAIID 642

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+   E + + ++     AW  G+KT YY+R R  T++E + ++
Sbjct: 643 TYAAATEHVDQGLSLTLFFPAEATTRDINRAQIYAWKKGIKTIYYIRLRQ-TALEGTEVQ 701

Query: 918 G 918
           G
Sbjct: 702 G 702


>gi|261340637|ref|ZP_05968495.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317050|gb|EFC55988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 761

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 216/797 (27%), Positives = 339/797 (42%), Gaps = 97/797 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLYDH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      ++ R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRDTRLEYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     E    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKD----ESIRKQRVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SI-----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +      G+++E            L W+ L++ +KT G+RNS   A+ P+ T + I   +
Sbjct: 582 TYKKDLDGIVSE---------PLHLDWEGLRESIKTHGLRNSTLSALMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P   ++ +K++  G    VV  +         LW      ++  +DG         
Sbjct: 633 NGIEPPRGHVSIKASKDGVLRQVVPDYETLGNNYELLW------EMPNNDG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQ 891
                             ++     QK+IDQ+ S N   D    PSGK    +L      
Sbjct: 678 -----------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLT 720

Query: 892 AWLMGLKTTYYLRSRSA 908
           A+  G+KT YY  +R  
Sbjct: 721 AYKFGVKTLYYHNTRDG 737


>gi|161502571|ref|YP_001569683.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863918|gb|ABX20541.1| hypothetical protein SARI_00615 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 761

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 212/792 (26%), Positives = 341/792 (43%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFG----------QFEPPALY-RHVVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + +GV PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEQGACPWFNETTYAKGVLPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-NEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G   ++   + +    +D ++  ++ ++  +DG               
Sbjct: 638 PRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK    +L      A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|188533367|ref|YP_001907164.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           tasmaniensis Et1/99]
 gi|188028409|emb|CAO96270.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 761

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 194/677 (28%), Positives = 300/677 (44%), Gaps = 55/677 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERIDLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259
           S+  LI ++ P+Y  + AR  +  LR++     ++ P    Q     EM    P     Y
Sbjct: 65  SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
             E        E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L      T +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFSGYPRTTRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+
Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFANQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    +  V  SNLC EI L        N  S E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDESGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++
Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            F   L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ 
Sbjct: 519 NFAYYLAKHGVRYSDGSANNLTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578

Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID+       +D  A+ N   +L W+ L++ VKT G+RNS   A+ P+ T + I   + 
Sbjct: 579 PIDTYK-----KDLDAICNTPLQLDWEGLRESVKTHGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSG 797
            I+P   ++ +K++  G
Sbjct: 634 GIEPPRGHISIKASKDG 650


>gi|209695248|ref|YP_002263177.1| ribonucleotide-diphosphate reductase subunit alpha [Aliivibrio
           salmonicida LFI1238]
 gi|208009200|emb|CAQ79454.1| ribonucleoside-diphosphate reductase 1 alpha chain [Aliivibrio
           salmonicida LFI1238]
          Length = 758

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 210/802 (26%), Positives = 347/802 (43%), Gaps = 83/802 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           + P+L +   +GT    N +++  ++  A   L +VS   V  +++   Y+G+  SD+  
Sbjct: 1   MTPQLTVTKRNGTTEKINLEKIHKVITWAAENLDNVSVSQVEMKSHIQFYEGMKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TIIKAAADLISEETPDYQYLAARLSVFHLRKKAYGQ-FEPPTLFKH----------VNNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           IE G   + + E   + +   +   + + RD  F Y  ++ L  +YF+   + G+  E  
Sbjct: 110 IELGKYDKHITEDYTEAEFDLMDQMIDHSRDMDFSYAAVKQLEGKYFVQNRVTGAIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L  K  +  +      FY+  S F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFAKYPKDTRLDYIQRFYDATSKFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I        G IPF K    
Sbjct: 228 IECDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+
Sbjct: 288 AVKCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    +LFSP +V  +++ +     EFE  Y  YE+      IK    I A+ L+  ++
Sbjct: 348 IKGEHISLFSPSDVPGMYEAFFADQVEFERLYLKYEQDT---SIKR-ETIKAIELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLTHVNDEEGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A          +L      AVR LD ++D   + +  A KS    R +G+G++
Sbjct: 464 LSAFNLGAIEKLE-----ELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +  ++ E I F+ + ASV LA+E+GA  +F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVKYSDGSANGLTHKTFEAIQFYLLKASVNLAKEQGACPAFNETTYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PIDS     +  D +  +    L W+EL+  +KT G+RNS   A+ P+ T + I   +  
Sbjct: 579 PIDS---YKKDIDNIC-SEELHLDWEELRSDIKTHGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + +K++  G   ++   + + L  +D ++  ++ ++  +DG            
Sbjct: 635 IEPPRGFVSIKASKDG---ILKQVVPDYLNLKDNYE--LLWNIGSNDG------------ 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYRQ---AWL 894
                          ++     QK++DQA S N   D   +P+GK  +  + +    A+ 
Sbjct: 678 --------------YLQLVGIMQKFVDQAISANTNYDPNSQPNGKVPMKLLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTL 916
           +GLKT YY  +R   S  +  L
Sbjct: 724 LGLKTLYYHNTRDGASDSQGDL 745


>gi|146312443|ref|YP_001177517.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319319|gb|ABP61466.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Enterobacter sp. 638]
          Length = 761

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 215/791 (27%), Positives = 342/791 (43%), Gaps = 89/791 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++     ++ P    H            + +E G
Sbjct: 65  AAADLISREAPDYQYMAARLAIFHLRKKAYGQ-FEPPALLDH----------VTKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDAHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLEYVKRFYDAVSIFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLYDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  + ++LA     AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--IKSLAELEELAV---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    VV  + + +     LW      ++  +DG             
Sbjct: 637 PPRGHVSIKASKDGVLRQVVPDYELLKDSYELLW------EMPNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                         ++     QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 725 GVKTLYYHNTR 735


>gi|212704402|ref|ZP_03312530.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
 gi|212672123|gb|EEB32606.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 176/624 (28%), Positives = 286/624 (45%), Gaps = 89/624 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFM 352
           +L  RY         E P+  F RVA  +A +E + E+        A +FY+L++S+ F+
Sbjct: 21  VLQKRYLHKKADGSTETPRDLFWRVASAIAAEEAKYERSPFTAEDLARQFYDLMTSWRFL 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+ +   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   +
Sbjct: 81  PNSPTLMNAASELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPKAS 140

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+ 
Sbjct: 141 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDIVEFIRAKEKEGE- 199

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + + FM+ V ++                          ENYE   D  
Sbjct: 200 ---FNNFNLSVGLTEAFMQAVERD--------------------------ENYE-LTDPH 229

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             KV   + A  ++  ++   ++TG P I F D  N  +P    G + S+N C E  L  
Sbjct: 230 TGKVTGSLRAREIFDLLVCRAWQTGDPGIVFLDRINRDNPTPAQGEIESTNPCGEQPLLP 289

Query: 593 SSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                  CNLGSINL   F          A    D+D L   +  AVR LDNVID +   
Sbjct: 290 YE----ACNLGSINLACFFVPGHASDEDPAAAGIDWDGLKQVVHLAVRFLDNVIDASRFP 345

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++  ++   +R IGLG+MGF   L  L IPY S   + +A+  M FI+    +AS  LA
Sbjct: 346 LDRIDETVRRNRKIGLGVMGFADLLFQLGIPYDSEAGIALAERIMGFINAEGHAASARLA 405

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG + ++  S     VFP    G                 P+            RN+ 
Sbjct: 406 EERGPFPAYAES-----VFPQRGEG-----------------PY------------RNAT 431

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+  V VN +    LK+  L    ++
Sbjct: 432 VTTIAPTGTLSIIGGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALKEAGLGTPELM 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
             +    GSI +++ +P  ++K+  TA +IDP+W +   +  Q+  D A S  + L   +
Sbjct: 492 EQV-VEKGSIQSLDALPAAMRKVFVTAMDIDPVWHLRMQAAFQRHTDNAVSKTVNLPHSA 550

Query: 882 GKK-LDFIYRQAWLMGLKTTYYLR 904
            ++ +  IY  A+  G K     R
Sbjct: 551 TEQDIHDIYWLAYKEGCKGVTVYR 574


>gi|304398197|ref|ZP_07380071.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304354063|gb|EFM18436.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 761

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 187/674 (27%), Positives = 309/674 (45%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+         LY +   + ++ G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VVKMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTML 553
             TLFSP +V  L+D +     EFE  Y  YE+ Q+ R +     ++ AV L+  M+   
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDQSIRKQ-----RVKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ + 
Sbjct: 467 FNLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGIMPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSG 797
           P   ++ +K++  G
Sbjct: 637 PPRGHISIKASKDG 650


>gi|308187585|ref|YP_003931716.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058095|gb|ADO10267.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 761

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 185/673 (27%), Positives = 307/673 (45%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P+         LY +   + ++ G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPK---------LYDQ-VVKMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDKSIRQ----QRVKAVDLFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    +  D ++LA+    AVR LD ++D   + I  A++     R +G+G++ +  
Sbjct: 468 NLGA--IESLDDLEELAT---LAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDT 582

Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D  A+ N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
              ++ +K++  G
Sbjct: 638 PRGHISIKASKDG 650


>gi|225869988|ref|YP_002745935.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
 gi|225699392|emb|CAW92839.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
          Length = 724

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 318/680 (46%), Gaps = 80/680 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y++ F+F   +G    Y  Y L  ++GS  +  + F  R  M              +  +
Sbjct: 84  YQQKFSFLSLMGAMKFYQSYALKTLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+   
Sbjct: 142 QILSGRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FL
Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522
           D ++   D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+  +IA 
Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+R      IK    ISA  L++ +  + FE+G+P++ F D  N R+P    G +  
Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S++             E   CNLGSIN +A    +   +++L   I T+V
Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAVGFEQL---IATSV 433

Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LD+V    D++C  ++EK   +NH   A+GLG M     L   HI Y S EAV+  D 
Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737
               ++++A  AS +LA+E+GA++ F+ S +  G +               +A + +   
Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +   S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+     
Sbjct: 551 LRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               V ++               ISD               D+       A+E+ P  +I
Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R      +  L
Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDVL 695

Query: 917 KGVDG--KLNAVPVTDPNSS 934
           +G +   +   V +TD N+S
Sbjct: 696 EGSEQYEEDTIVALTDTNAS 715


>gi|197285593|ref|YP_002151465.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|227356094|ref|ZP_03840484.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
 gi|194683080|emb|CAR43610.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis HI4320]
 gi|227163739|gb|EEI48651.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
          Length = 763

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 216/809 (26%), Positives = 343/809 (42%), Gaps = 99/809 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+   L+ 
Sbjct: 5   LLVTKRDGHKERIDLDKIHRVITWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++               E   LY ++    +E G
Sbjct: 65  AAADLISGETPDYQYLAARLAVFNLRKKAYG----------QFEPPALY-DHVKHLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + ++RD  F Y  ++ L  +YF+   I G   E  Q  +
Sbjct: 114 KYDRHLLEDYTKEEFEQMDKFIVHQRDMNFSYAAVKQLEGKYFVQNRITGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FYN +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 VLVAACL-FSRYPKETRMDYIERFYNAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    +  +  SNLC EI L +         + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAIAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    N  D ++LA   R AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGA--IENLDDLEELA---RLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +V      N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TYKKSLDV----LTNEPLHYDWESLRKEIKQYGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G    V                            +   ER+       
Sbjct: 638 PRGYISIKASKDGILRQV----------------------------VPEYERL------- 662

Query: 845 HATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ-- 891
              A+E+  +W + S           QK++DQA S N   D    PSGK  ++ + +   
Sbjct: 663 -KGAYEL--LWQMPSIEGYLQLVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLL 719

Query: 892 -AWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            A+  G+KT YY  +R      +  L+ V
Sbjct: 720 LAYKYGVKTLYYHNTRDGAEDVQGDLEEV 748


>gi|323497714|ref|ZP_08102729.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
 gi|323317190|gb|EGA70186.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
          Length = 760

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 207/793 (26%), Positives = 348/793 (43%), Gaps = 83/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVAKLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L + RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ + +    FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPQETRLSYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + +   EFE  Y  YE      +      + A+ ++  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ + 
Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PID
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     ++  E A++      WD L++ + T G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TYKKDVDLVCEEALH----YDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VK++  G   ++   +    K +D ++  ++ ++  +DG              +
Sbjct: 638 PRGYVSVKASKDG---ILKQVVPEFTKYKDNYE--LLWNIGSNDGY-------------L 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGL 897
           H                  QK++DQA S N   D     SG    KKL      A+  G+
Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGV 726

Query: 898 KTTYYLRSRSATS 910
           KT YY  +R   S
Sbjct: 727 KTLYYHNTRDGAS 739


>gi|16082440|ref|NP_394926.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           acidophilum DSM 1728]
 gi|10640815|emb|CAC12593.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 770

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 172/574 (29%), Positives = 281/574 (48%), Gaps = 80/574 (13%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G
Sbjct: 223 FEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTG 282

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R     +  T G + G + F+K+ + T   + QGGKR+GA    L   H D+ E
Sbjct: 283 FSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIME 342

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+ L K++  + +   + N +  + D F  ++           D+  DL +   K     
Sbjct: 343 FI-LSKDS--ENKVLSNFNISVGVTDDFFDKLDN---------DDYVDLVNPRTK----- 385

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        K+ ++I A  +W  ++   ++T  P + F D  N ++P ++VG + S
Sbjct: 386 -------------KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIES 432

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINC 640
           +N C E  L         CNLGSINL  +  + +  D+D+L  T+ TA R LD+VID N 
Sbjct: 433 TNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANK 488

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ KK     R IGLG+MGF   L  L IPY S EA+EI ++ M FI+  +  AS  
Sbjct: 489 FPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQA 548

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG + ++ GS W++                                   + I MRN
Sbjct: 549 LAEERGVFPAWYGSEWEK-----------------------------------EGIKMRN 573

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           S    IAPT TI+ I G S SI+P +   +V+  ++G +   VN     + ++  ++ E 
Sbjct: 574 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEE 633

Query: 820 MISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875
           ++  +       GN+E  +I +++KKI  TA EIDP W +   +  Q++ D   ++++N+
Sbjct: 634 LMRQV----AETGNLENVKINEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINM 689

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             D  + + +   YR A  +  K     R +S T
Sbjct: 690 RSD-ATREDIARAYRMAKDLHCKGITVYRDKSKT 722



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+      +       + L ++ V RL    + 
Sbjct: 6   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARLKDKERP 58

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129
           +    +E+IQD VE  LM S         + + Y+LYRE+R  +R
Sbjct: 59  S----VEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIR 99


>gi|315634376|ref|ZP_07889663.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476966|gb|EFU67711.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 756

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 206/791 (26%), Positives = 338/791 (42%), Gaps = 85/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L +     +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHALLDDYTREEWDEMDSFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++    
Sbjct: 352 DITLFSPSDVKGLYEAFFADQDKFEELYVQYEQDPSIRK----RTVKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L + 
Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEQGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +  
Sbjct: 468 NL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDT 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +  D L  +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 583 ---YKKDIDSLT-SEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 638

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             ++ VK++  G    V     N  +  + LWD                   IP +   +
Sbjct: 639 RGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPGNDGYL 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897
           H                  QK++DQA S N   D    E     +  + +    A+  GL
Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGL 726

Query: 898 KTTYYLRSRSA 908
           KT YY  +R  
Sbjct: 727 KTLYYQNTRDG 737


>gi|212712303|ref|ZP_03320431.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
 gi|212685049|gb|EEB44577.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
          Length = 763

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 213/803 (26%), Positives = 344/803 (42%), Gaps = 87/803 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     ++ P+   H +            +E G
Sbjct: 65  AAADLITGETPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYAHVK----------HLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E   + D   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYTEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L     +  +      FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFSHYPQATRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N 
Sbjct: 292 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQ 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552
             TLFSP +V  L+D +     EFE  Y  YE+       +  RK  + AV L+  M+  
Sbjct: 352 NITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD------ETIRKSSVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AKK +   R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDELEELAILAVRALDALLDYQDYPIPAAKKGSMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+        D+L  N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKRELDKLT-NEPLHYDWEALRAEIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G            L+Q       ++ D +   G+   + ++P +   
Sbjct: 637 PPRGYISIKASKDGI-----------LRQ-------VVPDYENLKGAYELLWQMPSNSGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMG 896
           +                   QK+IDQ+ S N   D    P+GK  ++ + +    A+  G
Sbjct: 679 LQLVGI-------------MQKFIDQSISSNTNYDPTRFPNGKVPMNQLLKDLLLAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY  +R      +  L+ V
Sbjct: 726 VKTLYYHNTRDGAEDVQGDLEEV 748


>gi|218887121|ref|YP_002436442.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758075|gb|ACL08974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 770

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 177/636 (27%), Positives = 290/636 (45%), Gaps = 106/636 (16%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351
           +L  RY+    +G   E  +A F R+A  +A +E + +K        A EFY+L++ + F
Sbjct: 31  VLAKRYYRKGPDGQPYEDARALFWRIAGAIAAEEGKYKKSPYKADALAREFYDLMTGWKF 90

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 91  LPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPKE 150

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 151 ARVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIIEFIRAKERDGE 210

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FMK V  +  + L +P                           
Sbjct: 211 ----FNNFNLSVGLTEAFMKAVEADEEYDLVAPHT------------------------- 241

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           G+++   ++ A  ++  ++   +E+G P I F D  N  +P    G + S+N C E  L 
Sbjct: 242 GQVR--ERLKARKVFEMLVQKAWESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLL 299

Query: 592 SSSEETAVCNLGSINLLAHFA----------------NNQFDYDKLASTIRTAVRVLDNV 635
                   CNLGSINL A F                     D+ +L   I   VR LDNV
Sbjct: 300 PYE----ACNLGSINLSAFFVPGTATAREGGLPHPSPEKAIDWAELKRVIHLGVRFLDNV 355

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID +   +E+  ++ H +R IGLG+MG+   L+ L IPY S EA+ + +  M+F+     
Sbjct: 356 IDASRFPLERITETVHRNRKIGLGVMGWADLLYQLGIPYDSQEAIGLGERMMQFVQDEGR 415

Query: 696 SASVELAQERGAYSSFKGSLW---DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +AS  LA+ERG + +F  S +   D G +                               
Sbjct: 416 AASKVLAKERGPFPAFAESTFAERDMGPY------------------------------- 444

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELK 811
                 RN+    IAPT T++ I G S  I+P +   + ++ M G+  V VN      L+
Sbjct: 445 ------RNATVTTIAPTGTLSIIAGCSSGIEPLFALCFSRNVMDGERLVEVNPHFEAALR 498

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                 + ++  +    GSI  ++ +P+DL++++ TA +I P+W +   +  QK+ D A 
Sbjct: 499 DTGSHSKKLMEAVA-EKGSIQAMDHLPEDLRRVYVTAMDIAPVWHLRMQAAFQKYTDNAV 557

Query: 872 SLNLYLDEPSGKKLD---FIYRQAWLMGLKTTYYLR 904
           S  + L  P+   +D    IY  A+  G K     R
Sbjct: 558 SKTVNL--PNSASIDDIRAIYWMAYEQGCKGVTVYR 591


>gi|251792453|ref|YP_003007179.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533846|gb|ACS97092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter aphrophilus NJ8700]
          Length = 756

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 205/792 (25%), Positives = 337/792 (42%), Gaps = 85/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGKLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDHALLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++++     +FE  Y  YE+     +    R + AV L+  ++    
Sbjct: 352 DITLFSPSDVPGLYEVFFADQDKFEELYVQYEQDPSIRK----RAVKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEEGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +  
Sbjct: 468 NL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDT 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +  D L  +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 583 ---YKKDIDSLT-SEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 638

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             ++ VK++  G    V     N  +  + LWD                   IP +   +
Sbjct: 639 RGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPGNDGYL 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897
           H                  QK++DQA S N   D    E     +  + +    A+  GL
Sbjct: 680 HLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGL 726

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 727 KTLYYQNTRDGA 738


>gi|320161749|ref|YP_004174974.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
 gi|319995603|dbj|BAJ64374.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
          Length = 868

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 184/660 (27%), Positives = 316/660 (47%), Gaps = 68/660 (10%)

Query: 299 QILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFM 352
           Q+L  RY   + +G+  E     F RVA  +A  E      +   RA EFY LL+S  F 
Sbjct: 35  QVLIRRYVRRNDDGTPAESVDEMFWRVAYNIAKVEVSFGNPDVMTRAREFYILLTSKKFF 94

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDL----YGIFGALQENAMLAKYSGGLGNDWTPVR 408
            ++PT   +GT   QL++CF+  + DD+     GIF  L++ A++ +  GG G  ++ +R
Sbjct: 95  PNSPTFTGAGTPLGQLAACFVLPIVDDMGRDSMGIFQTLRDAALIQQTGGGNGFSFSRLR 154

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +  ++G++ G + FL+V +     + QGG R+GA    L   H D+EEF+  +  
Sbjct: 155 PKGTVVKSSSGQATGPVGFLRVYDHAFGEIAQGGTRRGANMGVLRVDHPDIEEFITCKT- 213

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D     + N +  I D FM+ V ++A W L  PD    + D   + F    E  E++
Sbjct: 214 ---DENAITNFNISVGITDAFMRAVKEDAEWELRFPD----VTDPRYRTFRGTLEQAEQE 266

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+ ++K+ A  L+ K++      G P + F D  N  +P  H+  + ++N C E 
Sbjct: 267 GI--PIRTYKKVRARDLFNKIVKQAHHNGEPGVLFLDAANRSNPVPHLYQLEATNPCGEQ 324

Query: 589 TLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT--IEK 645
            L         C LGS+NL  H  +N   D++ L  ++  +   LD+V++ N +   + +
Sbjct: 325 YLGPYEN----CCLGSVNLAQHLGDNGTVDWEGLRQSVVLSTIFLDDVVEANAYVPAVPQ 380

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +++    R IGLG+MG    ++   I Y SPE  E A + MEFI +HA+  S+ELAQ+R
Sbjct: 381 LREAAMRARRIGLGIMGLADLMYHCGIRYGSPEGQEFAAQVMEFIRYHAMQTSIELAQQR 440

Query: 706 GAYSSFKGSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRN 760
           GA+ +  GS++D       P  SI  +    D        R P  WD + + ++  G+RN
Sbjct: 441 GAFPAIHGSIYDPENLKWAPPQSI--VPYTHD------YGRPPIDWDIITEGIRKHGIRN 492

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVK--SNMSGDFTVVNSFLVNEL------- 810
           +    IAPT TIA + G      +P +   Y++  ++   D  ++ +    E        
Sbjct: 493 AAQTTIAPTGTIATVAGCEGYGCEPVFALAYIRHVNDNGKDLQLIYASPAFEKAIARAGI 552

Query: 811 ---KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
              K++++ ++ M       +G+  +I+ +P+ ++ +   + +I     +   +  Q ++
Sbjct: 553 EAEKRQEILEQIM------REGTCQHIKDLPEAIRNVFVVSADITAEEHVRMQAALQAFV 606

Query: 868 DQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGK 922
           D   SL+  ++ P G   + +   Y  AW +G K  T Y   SR    +E  TLK  + K
Sbjct: 607 D--NSLSKTINFPEGATEEDVATAYMLAWELGCKGITVYVTGSREKVVLE--TLKTAEKK 662


>gi|326781923|ref|YP_004322325.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003113|gb|ADO97511.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 765

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 180/675 (26%), Positives = 316/675 (46%), Gaps = 57/675 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DG +   + +++ ++VEEAC GL  VS+  V  ++    YDG++ ++++  LI +
Sbjct: 6   KVKKRDGRIEPLDLEKMHLMVEEACQGLAGVSASQVEMKSGIQFYDGITTAEIQEILIKA 65

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF-----CRY 259
           +  LI+ + PNY  V AR LL  LR+ +   + + P   TH    C+  E +      +Y
Sbjct: 66  ASDLIDLDHPNYQFVAARLLLFSLRKSLYGKMRELPHLETHIN-DCVGKEVYDSDIYTKY 124

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
            +E ++               + + + + RDF F Y GL+ + D+Y +     G   E P
Sbjct: 125 SKEEIEK--------------VNSYIDHNRDFLFTYAGLRQVVDKYLVQDRSGGGVYETP 170

Query: 318 QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372
           Q  +M +A+ +  +E  KE R      +Y+ +S       TP +  +G R P  Q +SC 
Sbjct: 171 QFMYMMIALTI-FREYPKETRLSYVKRYYDAISKHRINIPTPIM--AGVRTPLRQFASCV 227

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D L  IF +            G+G +   +RG+ + I G   +  GV+PFLK   
Sbjct: 228 LVDVDDTLDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFE 287

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R
Sbjct: 288 STVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYER 347

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
              +   +LFSP +V  L+D +G + F+  Y +YE      +  + RK + A  L   +L
Sbjct: 348 FIADGEISLFSPHDVPGLYDAFGTDAFDARYVDYE-----SDQSIPRKTVRAQELILNLL 402

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               ETG  ++   D CN  S  +    V  SNLC EITL        +    E A+C L
Sbjct: 403 KERAETGRIYLMNIDHCNSHSSFKD--KVEMSNLCQEITLPTYPLQHIDDEGAEIALCIL 460

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+    ++     ++L      +VR L+ +ID   + ++ A+++    R++G+G +G
Sbjct: 461 SAINVGKVRSD-----EELEELCDLSVRGLEELIDYQEYPVKAAERATKARRSLGIGFIG 515

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L  L   Y S EA +      E   ++ + +S ++A+E+G  + F  + +  G+ P
Sbjct: 516 LAHYLAKLGYKYDSQEAWDAVHGLSESFQYYLLKSSNQIAKEKGWCADFGRTKYSDGILP 575

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +  DE+     +   W+ L+  +   G+R+S   A  P+ + + +   +  I
Sbjct: 576 IDT---YKKDVDEITTEGLAH-DWESLRASILEHGLRHSTLSAQMPSESSSVVSNATNGI 631

Query: 783 DPSYQNLYVKSNMSG 797
           +P    L +K +  G
Sbjct: 632 EPPRDYLSIKKSKKG 646


>gi|117620066|ref|YP_856856.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561473|gb|ABK38421.1| ribonucleoside-diphosphate reductase, alpha subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 767

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 183/657 (27%), Positives = 298/657 (45%), Gaps = 47/657 (7%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219
           ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I ++  LI E+ P+Y  +
Sbjct: 31  KIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIKAAADLISEQSPDYQYM 90

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++     ++ P          LY ++  + ++ G   + L E     +  
Sbjct: 91  AARLAIFHLRKKAYGQ-FEPPH---------LY-QHVAKLVDMGKYDKHLLEDYSQAEFE 139

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            L   L + RD  F Y  ++ L  +Y +   + G   E PQ  ++ VA  L   +  K+ 
Sbjct: 140 ELNQHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACL-FSKYPKDT 198

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R      FY+ +S+F     TP +  SG R P  Q SSC L    D L  I         
Sbjct: 199 RLDYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECDDSLDSINATASAIVR 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +RGLG+ I G      G IPF K         +QGG R GA   + 
Sbjct: 257 YVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFY 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH +VE  L L+ N G +  R   M+    I  L  +R+ +    TLFSP +   L+D
Sbjct: 317 PLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYD 376

Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +FE  Y  YE+     +    + + AV L+  M+     TG  +I   D CN 
Sbjct: 377 AFFADQDKFEALYVKYEQDPSIRK----KTLKAVDLFSLMMQERAGTGRIYIQNVDHCNT 432

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  V  SNLC EI L        +    E A+C L + NL A       D ++
Sbjct: 433 HSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNLGA--IEKLEDLEE 490

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +A     AVR LD ++D   + ++ A K +   R +G+G++ +   L      Y+    +
Sbjct: 491 MAD---LAVRALDALLDYQDYPLKAAMKGSMNRRTLGIGVINYAYYLAKNGARYSDGSGL 547

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +   + E I ++ + ASV+LA+E G   +F  + + QG+ PID+     +  D L  N 
Sbjct: 548 ALTHRTFEAIQYYLLKASVQLAREFGPCPAFNETTYAQGILPIDT---YKKDLDNLC-NE 603

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              L W+ L++ ++T+G+RNS   A+ P+ T + I   +  I+P    + VK++  G
Sbjct: 604 PLHLDWEALREEIRTVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVKASKDG 660


>gi|317048918|ref|YP_004116566.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950535|gb|ADU70010.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 761

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 187/672 (27%), Positives = 300/672 (44%), Gaps = 45/672 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALYDQ-VVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDRHLLEDYSKEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFSGYPRATRMDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYTTYEKDDSIRK----QRVKAVELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPSIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A   ++  D ++LA     AVR LD ++D   + I  AK+     R +G+G++ F  
Sbjct: 468 NLGA--IDSLDDLEELAI---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P D+
Sbjct: 523 YLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPTDT 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +  D +  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 583 ---YKKDLDSIC-NEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPP 638

Query: 786 YQNLYVKSNMSG 797
             ++ +K++  G
Sbjct: 639 RGHISIKASKDG 650


>gi|260768283|ref|ZP_05877217.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|260616313|gb|EEX41498.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|315179990|gb|ADT86904.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           furnissii NCTC 11218]
          Length = 760

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 214/793 (26%), Positives = 336/793 (42%), Gaps = 87/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H              +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLDH----------VSAMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +   L   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREEFELLNGFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKATRLDYVKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ + 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + +   EFE  Y  YE       IK  R + AV ++  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLVNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       D+++LA  +   VR LD ++D   + +  A+KS    R +G+G++ + 
Sbjct: 467 FNLGA--IEKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PID
Sbjct: 522 YYLARHGVKYSDGSANGLTHRTFEAMQYYLLKASVNLAKEQGKCPAFDETNYAKGLLPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +L  +      W+ L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDLLCDEPLHYDWNALREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    VV  F   +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY------------ 678

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLM 895
            +H                  QK++DQA S N   D     SG    KKL      A+  
Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSA 908
           G+KT YY  +R  
Sbjct: 725 GVKTLYYHNTRDG 737


>gi|326782932|ref|YP_004323330.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004191|gb|ADO98585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 772

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 199/699 (28%), Positives = 321/699 (45%), Gaps = 49/699 (7%)

Query: 139 APIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +P  PK + +   +G     +  ++  +VE AC GL  VS   V   +    +DG+  +D
Sbjct: 7   SPRTPKPINVTKREGEKTPLDLNKVHKMVELACEGLAGVSESAVEINSGLQFFDGIKTAD 66

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++  LI S+  LI  + PNY  V AR LL  LR+ V             H  +C      
Sbjct: 67  IQEILIRSANDLISLDHPNYQYVAARLLLFGLRKAVYNGHPDGHPPLLEHVKKC------ 120

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRI 314
              I++GV    +     + +   L + + ++RD+ F Y G++ + D+Y +    +G   
Sbjct: 121 ---IDKGVYDSSIVSKYTEEEWEKLNSYIDHDRDYLFTYAGIRQVVDKYLVQDRSSGEVY 177

Query: 315 EMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLS 369
           E PQ  +M VA+ L  ++ +K  R     ++Y+ +S       TP +   G R P  Q +
Sbjct: 178 ETPQFMYMMVAITL-FQDDDKFYRLEYVRKYYDAISKHRLNIPTPIM--GGVRTPLRQFA 234

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L  V D L  IF +            G+G +   +RG+ + I     +  GV+PFLK
Sbjct: 235 SCVLVDVDDTLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRSGEVQHTGVVPFLK 294

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
               T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF
Sbjct: 295 KFESTVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISQLF 354

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            +R   +   +LFSP +V  L++ +G  EF+  Y  YE   DR   +  + + A  L   
Sbjct: 355 YQRFIDDRSISLFSPHDVPGLYEAFGTPEFDDLYVEYEN--DRAIPR--KTMKAQKLILD 410

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601
           +L    ETG  +I   D CN  S  +    V+ SNLC EITL +        S E A+C 
Sbjct: 411 LLKERAETGRLYIMNIDHCNSHSSFKD--KVNMSNLCQEITLPTDPIQHIDGSGEIALCI 468

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L +IN +    N +    +L      AVR LD +ID   + +  AK+S    R++G+G +
Sbjct: 469 LSAIN-VGKLKNLE----ELDELCELAVRGLDALIDYQQYPVNAAKQSTLNRRSLGIGYI 523

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L      Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ 
Sbjct: 524 GLAHYLAKNGAKYDSQKAFDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGIL 583

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+    +EV DE+  N  S   W+ L+ R+K  G+R+S   A  P+ + + +   +  
Sbjct: 584 PIDTYK--SEV-DEIVPNDLS-CDWEYLRGRIKEYGLRHSTLSAQMPSESSSVVSNATNG 639

Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRD--LWD 817
           I+P    L VK +  G    +V S+  N LK     LWD
Sbjct: 640 IEPPRDYLSVKKSKKGPLKQIVPSY--NSLKANYTLLWD 676


>gi|319944854|ref|ZP_08019116.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319741424|gb|EFV93849.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 727

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 203/667 (30%), Positives = 312/667 (46%), Gaps = 80/667 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y R F F  +LG    Y  Y L   NG R +E  +   + VA+ LA  +   E+ A+
Sbjct: 103 DEAYSRKFRFPTFLGAFKYYTSYTLKTRNGQRYLERFEDRVVMVALTLARGD---EQLAL 159

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F + +    F  +TPT  N+G +   +L SCFL  V D++  I  A+     L+K  GG
Sbjct: 160 RFMDEIIGGRFQPATPTFLNAGKKSRGELISCFLLRVEDNMESIGRAINSALQLSKRGGG 219

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R LGA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 220 VALMLTNLRELGAPIKGIENQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 279

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    D+  +YGK F 
Sbjct: 280 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNADMYLFSP---HDVEKVYGKAFS 336

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           EI+  E Y+       I+  +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G
Sbjct: 337 EISVTEKYDEMVGDKRIRK-KKINAREFFQTLAEIQFESGYPYIMFEDTVNAANPIE--G 393

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI  +N +S                CNLGS+N+ A       D   L +T+
Sbjct: 394 RITMSNLCSEILQVNEASTFNDDLSYRHLGTDISCNLGSLNIAA-----AMDGPDLGATV 448

Query: 626 RTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             AVR L  V +++   ++   ++ N    A+GLG M     L    I Y SPE ++   
Sbjct: 449 EAAVRALTAVSEMSAIDSVPSVRRGNDEAHAVGLGQMNLHGFLARERIHYGSPEGIDFTR 508

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA- 737
                +++HA+ AS  LAQE+G+ +  F  S +  G F       D +     VR+  A 
Sbjct: 509 VYFATVAYHALRASNLLAQEKGSTFVGFDRSKYADGSFFEKYVTRDWLPETETVRELFAR 568

Query: 738 MNRT--SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
           M+ T  +R  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + + K +
Sbjct: 569 MDVTLPTREDWAALREAVMKHGLYNRNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKES 628

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       F+ N+                       N+E   D        A+EI P 
Sbjct: 629 KIGRVYYPAPFMTND-----------------------NLEYYRD--------AYEIGPE 657

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRSRSATSV 911
            LI++ +   + +DQ  SL L+   PS      I R    AW  G+KT YY+R R A  +
Sbjct: 658 PLIDTYAAATEHVDQGLSLTLFF--PSDATTRDINRAQIYAWKKGIKTIYYVRLRQAV-L 714

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 715 EGTEVQG 721


>gi|254507982|ref|ZP_05120110.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219549090|gb|EED26087.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 760

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 214/796 (26%), Positives = 342/796 (42%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVIAWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVAKLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   + + RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE      +      + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDVDLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKENYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894
             +H                  QK++DQA S N   D     SG    KKL      A+ 
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
            G+KT YY  +R   S
Sbjct: 724 YGVKTLYYHNTRDGAS 739


>gi|289805311|ref|ZP_06535940.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 664

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 187/674 (27%), Positives = 298/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V   L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVVACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 637 PPRGYVSIKASKDG 650


>gi|91227185|ref|ZP_01261644.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269967068|ref|ZP_06181136.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
 gi|91188713|gb|EAS75001.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269828327|gb|EEZ82593.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
          Length = 760

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 216/799 (27%), Positives = 345/799 (43%), Gaps = 89/799 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 CCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE       IK    + A+ ++  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP---SIKK-ETVKAIEMFTLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F 
Sbjct: 467 FNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PID
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFDETNYAKGLLPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDIDLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    VV  F   ELK  D ++  ++ ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEF--TELK--DSYE--LLWNIGSNDGY------------ 678

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAWL 894
            +H                  QK++DQA S N   D PS         KKL      A+ 
Sbjct: 679 -LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEK 913
            G+KT YY  +R     E+
Sbjct: 724 FGVKTLYYHNTRDGAKDEQ 742


>gi|325578587|ref|ZP_08148687.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159823|gb|EGC71953.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 756

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 210/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P+   H +      +Y     +  
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-----DPA 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           + A    E   + D       + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 119 LLADYTREEWDEMD-----GFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           D L  I      +A + KY     G+G +   +R LG+ I G      G IPF K     
Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ 
Sbjct: 289 VKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLI 348

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           + A  TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++ 
Sbjct: 349 KGADITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL         D D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ 
Sbjct: 465 SAFNL-----GKLDDLDELENLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ P
Sbjct: 520 YAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILP 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+        D L         W+ L++ +K  G+RNS   A+ P+ T + I   +  I
Sbjct: 580 IDT---YKNDIDSLT-QEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P   ++ +K++  G    V     N     + LWD                   IP + 
Sbjct: 636 EPPRGHVSIKASKDGILKQVVPDYENLSDNYELLWD-------------------IPSND 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWL 894
             +H                  QK++DQA S N   D    E     +  + +    A+ 
Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSAT 909
            GLKT YY  +R   
Sbjct: 724 YGLKTLYYQNTRDGA 738


>gi|91775576|ref|YP_545332.1| ribonucleotide-diphosphate reductase subunit alpha [Methylobacillus
           flagellatus KT]
 gi|91709563|gb|ABE49491.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Methylobacillus flagellatus KT]
          Length = 774

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 213/805 (26%), Positives = 343/805 (42%), Gaps = 88/805 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K    DG     N  ++  +++ A  GL +VS   V  +++   YDG+    +   +I 
Sbjct: 22  MKATKRDGRQEPINLDKIHRVIDWAAQGLDNVSVSQVELKSHIQFYDGIRTDVIHETIIK 81

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR+ +    ++ P    H            +  E G
Sbjct: 82  SAADLISEETPDYQYLAARLSIFHLRK-IAYGQFEPPHLFDH----------VTKLTEMG 130

Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
              K  L   S  +FD   L + L + RD  F Y  ++ L  +Y +   +     E PQ 
Sbjct: 131 KYDKHILQDYSREEFDA--LNDHLDHWRDMNFSYAAVKQLEGKYLVQNRVTKKIYESPQF 188

Query: 320 FFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            +M VAM L  +   K +      FY+ +S+F     TP +  SG R P  Q SSC L  
Sbjct: 189 LYMLVAMCLFARYEGKTRLEYIKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 246

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G +PF K+     
Sbjct: 247 CDDSLDSINATTSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAQHTGCLPFYKLFQAAV 306

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ +
Sbjct: 307 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQINRLLYQRLIK 366

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    R + AV L+  ++  
Sbjct: 367 GGNITLFSPHDVPGLYDAFFADQDEFERLYTQYEANDSLRK----RIVPAVDLFSLLMQE 422

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L 
Sbjct: 423 RAGTGRIYIQNVDHCNTHSPFNPRLAPVRQSNLCMEIALPTRPLNDINDENGEIALCTLS 482

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + ++ A  +    R++G+G++ +
Sbjct: 483 AFNLGALES-----LDELEGLADLVVRALDALLDYQDYPVKAAFNATQKRRSLGVGVINY 537

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y    A+ +   + E I ++ + ASV+LA+E G   +F  + + QG+ PI
Sbjct: 538 AYYLAKNGTGYTDDAALGLTHRTFEAIQYYLLKASVQLAREFGPCGAFNETTYSQGILPI 597

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   + A+    +L W++L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 598 DTYKKDLDAVCQEAL----QLDWEQLRKDIVAHGLRNSTLTALMPSETSSQIANATNGIE 653

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK +  G    V                            +  IER+ +  + 
Sbjct: 654 PPRGLVSVKQSKDGILRQV----------------------------VPEIERLRNQYQL 685

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
           + +       + L+      QK++DQ+ S N   D       +   K+L     QA+ +G
Sbjct: 686 LWSLPNNDGYLKLV---GIMQKFVDQSISSNTNYDPKRFEGGKVPMKQLLKDLLQAYKLG 742

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           +KT YY  +R   S E     G DG
Sbjct: 743 IKTLYYHNTRDGAS-EGGAEAGDDG 766


>gi|25010528|ref|NP_734923.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23094881|emb|CAD46099.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 722

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N++S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V    +  +    KK N  + A+GLG M     L   HI Y S EA++  D    
Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           + P  +I  A+  QK IDQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|205353393|ref|YP_002227194.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273174|emb|CAR38136.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628484|gb|EGE34827.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 761

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 211/793 (26%), Positives = 338/793 (42%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   +     E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTDEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 522 YWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 581

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G            L+Q       ++ D ++   +   +  +P++   
Sbjct: 637 PPRGYVSIKASKDG-----------ILRQ-------VVPDYEHLKDAYELLWEMPNNEGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
           +                   QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 679 LQLVGI-------------MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 VKTLYYQNTRDGA 738


>gi|77414135|ref|ZP_00790301.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77159805|gb|EAO70950.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 722

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + F F  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YAKKFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTGSQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V    +  +    KKSN  + A+GLG+M     L   HI Y S EA++  D    
Sbjct: 434 RALDRVSRTSDLDSAPSIKKSNAANHAVGLGVMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           + P  +I  A+  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|237747537|ref|ZP_04578017.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
 gi|229378899|gb|EEO28990.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
          Length = 761

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 215/801 (26%), Positives = 344/801 (42%), Gaps = 85/801 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRKERIDLDKIHRVIDWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++               E   LY ++  R +  G
Sbjct: 65  SAADLISGETPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVKRLVGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDSHLLEDYSPAEFAEMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY  +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFSKYPKQTRLDYIRRFYEAVSTFRVSLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINVTASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G D  R   ++    +  L  KR+    
Sbjct: 292 CSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNRLMYKRLIAGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE  AD G I+  + + AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYSLYE--AD-GSIRK-KTVKAVELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D+L      AVR LD ++D   + +  AK      R +G+G++ F  
Sbjct: 468 NLGAIDS-----LDELEELATLAVRALDALLDYQDYPVLAAKNGAMGRRTLGIGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +GV P+D+
Sbjct: 523 YLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFGETSYAKGVLPVDT 582

Query: 726 IGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +D  A  N      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YK-----KDLDAFCNEPLHYDWEALRENIRQYGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ +K++  G   ++   + +  + +D ++  ++ DL  ++G               
Sbjct: 638 PRGHISIKASKDG---ILRQVVPDYEQLKDAYE--LLWDLPDNNG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGL 897
                       ++     QK++DQA S N   D    PSGK    +L      A+ +G+
Sbjct: 678 -----------YLQLVGVMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLMAYKLGV 726

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY  +R      +  L+ 
Sbjct: 727 KTLYYQNTRDGAEDSQEDLQA 747


>gi|77411320|ref|ZP_00787669.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77162656|gb|EAO73618.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
          Length = 722

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N++S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD +    +  +    KK N  + A+GLG M     L   HI Y S EA++  D    
Sbjct: 434 RALDRISRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           + P  +I  A+  QK IDQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|270307983|ref|YP_003330041.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153875|gb|ACZ61713.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 599

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 183/630 (29%), Positives = 296/630 (46%), Gaps = 95/630 (15%)

Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNLLSSFHF 351
           ++L  RY     +G  IE P+  F RVA  +A  E +    A       EFY  +    F
Sbjct: 22  RVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYAPGADISRIEEEFYQAMFRLEF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFSDLRPAG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  +   GD
Sbjct: 142 DKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISCK---GD 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               T+   +     D FM +V     + + +P                           
Sbjct: 199 PNALTNFYISVVVTRD-FMTKVRNGEDYDIINPHT------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V ++++A  ++ +++   ++TG P + F D  N  +P   +G +   + C E TL 
Sbjct: 233 GE--VVQRLNAACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSGCGEQTLL 290

Query: 592 SSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N     + +
Sbjct: 291 PYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKFPTPEIE 346

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+   +R +GLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS +LA+ RG+
Sbjct: 347 KATLRNRKVGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKLAEVRGS 406

Query: 708 YSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           + +++GS++D  G  P                                   MRN+ C +I
Sbjct: 407 FPAYEGSIYDVPGGRP-----------------------------------MRNATCTSI 431

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD-----EAMI 821
           APT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R  +      E ++
Sbjct: 432 APTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGGFHSKELFEKLV 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
           S    HD     IE IPD LK++  TA  I P W I   +  QK+ D A S  + +  E 
Sbjct: 492 SSNHLHD-----IECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTVNFSHEA 546

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSA 908
           + + +  ++  A+  GLK  T Y   SR+A
Sbjct: 547 TREDMANVFNMAYDKGLKGITVYRDGSRAA 576


>gi|34419510|ref|NP_899523.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
 gi|34333191|gb|AAQ64346.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
          Length = 741

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 216/790 (27%), Positives = 349/790 (44%), Gaps = 98/790 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205
           ++   G    F   +L  ++ +AC     +    +L+     + DG++  D++ A I  +
Sbjct: 3   VVKSSGITEEFEESKLMRVLSDACKNTT-IDPHQLLARVKAQLSDGMTSKDIQKAAIKIA 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           + ++  +EP+Y  V AR  +  LR++V       P               F + IE    
Sbjct: 62  ADSISVEEPDYQYVAARLAMYGLRKDVYGQFDPIP---------------FKQLIERNTA 106

Query: 266 ARL----LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
             +    + E   D +L YL + +K+ERDF F Y G+    ++Y     G+    E PQ 
Sbjct: 107 IEVYDSEILEKWSDSELEYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQY 166

Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
            +M +AM L  +E  ++ K  ++FYN +S+      TP +  +G R P  Q SSC     
Sbjct: 167 AYMLIAMCLHQEEKYDRLKHVIDFYNAVSTQKLSLPTPIM--AGVRTPTRQFSSCVKIES 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I    +          G+G +   +R  G+ +     +  GVIPF K       
Sbjct: 225 GDSLRSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVK 284

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA       WH++VE+ L L+ N G +  R   ++ +  I  L M+R+  N
Sbjct: 285 SCSQGGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNN 344

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYER-----QADRGEIKVFRKISAVALWRKMLT 551
              TLFSPDE      LYG E+    E +ER     +AD    K  ++I A  L+     
Sbjct: 345 EYITLFSPDERHGA--LYG-EYHTNPEEFERLYLELEADPKVRK--KRIKATELFSIFGQ 399

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----LNSSSEETAVCNLGSIN 606
               TG  +  F D  N +SP  ++  +  SNLC EI      L +S EE A+C L + N
Sbjct: 400 ERSSTGRIYPIFVDNLNAQSP--YIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYN 457

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  + ++F   +LA  +   +R LDN++D   + +E A+K+ +  RA+G+G+  F   
Sbjct: 458 LGAIESPSEF--ARLAPIV---IRALDNLLDYQDYPVEAAEKAKY-RRALGIGITNFAYF 511

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y S  A  +  E ME +S++ I AS+ LA+ERGA    + + W +G  PID  
Sbjct: 512 LAKNFVGYDS-SAKYLVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRWAKGQLPID-- 568

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +  D+L +     L W+ L+  V   GMRN    A  P  + + I   +  I+P  
Sbjct: 569 -WYNKNVDKL-VKPNYNLDWEALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPP- 625

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
                                            ++S  +  DG    +    D LK  + 
Sbjct: 626 -------------------------------RGLVSTKQSKDGVFNQVVPEVDLLKDEYG 654

Query: 847 TAFEI---DPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQAWL---MG 896
            A+++   D    +   +  QK++DQ+ S N Y D    P+GK  ++ I+ +       G
Sbjct: 655 LAWKVCEKDNFGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEELAFCSHYG 714

Query: 897 LKTTYYLRSR 906
           +KT YY  +R
Sbjct: 715 IKTLYYSNTR 724


>gi|312885177|ref|ZP_07744857.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367190|gb|EFP94762.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 760

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 210/794 (26%), Positives = 340/794 (42%), Gaps = 85/794 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   L+ E+  + +E 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLF-EHVTKLVES 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +LV L + + ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTQAELVELDSFIDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  +  + +    FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKHNRLSYIKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 CCSQGGVRGGAATLFYPIWHGESRALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEG 350

Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + ++   FE  Y  YE      +      + A+ L+  ++   
Sbjct: 351 GNITLFSPSDVPGLYDAFFEDQDKFERLYVQYENDDTVKK----ETVKAIELFSILMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDSQVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    +  D+ +L+  +   VR LD ++D   + +  A KS    R +G+G++ + 
Sbjct: 467 FNLGA--IKSLDDFAELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I +H + ASV LA+E+G    F  + + +G+ PID
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVNLAKEQGKCPLFHETNYAKGLLPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDTDSIC-DEPLHYDWDSLREEIVEHGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + +K++  G    VV  F   +     LW      D+  +DG              
Sbjct: 638 PRGYVSIKASKDGILKQVVPEFSEYKENYELLW------DIGSNDGY------------- 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMG 896
           +H                  QK++DQA S N   D     SG    KKL      A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATS 910
           +KT YY  +R   S
Sbjct: 726 VKTLYYHNTRDGAS 739


>gi|319744437|gb|EFV96794.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 722

 Score =  233 bits (595), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 186/657 (28%), Positives = 310/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YTKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N++S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD +    +  +    KK N  + A+GLG M     L   HI Y S EA++  D    
Sbjct: 434 RALDRISRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           + P  +I  A+  QK IDQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|238761951|ref|ZP_04622924.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238699679|gb|EEP92423.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 761

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 208/792 (26%), Positives = 343/792 (43%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H  + +    + +++ E 
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A    E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRMDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDTISDE-----PLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + +D ++  ++ ++  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKDAYE--LLWEMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSA 908
           +KT YY  +R  
Sbjct: 726 VKTLYYQNTRDG 737


>gi|301156449|emb|CBW15920.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 756

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 210/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P+   H +      +Y     +  
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-----DPA 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           + A    E   + D       + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 119 LLADYTREEWDEMD-----GFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           D L  I      +A + KY     G+G +   +R LG+ I G      G IPF K     
Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ 
Sbjct: 289 VKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLI 348

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           + A  TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++ 
Sbjct: 349 KGADITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL         + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ 
Sbjct: 465 SAFNL-----GKLENLDELESLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ P
Sbjct: 520 YAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILP 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+        D L         W+ L++ +K  G+RNS   A+ P+ T + I   +  I
Sbjct: 580 IDT---YKNDIDSLT-QEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P   ++ +K++  G    V     N     + LWD                   IP + 
Sbjct: 636 EPPRGHVSIKASKDGILKQVVPDYENLSDNYELLWD-------------------IPSND 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWL 894
             +H                  QK++DQA S N   D    E     +  + +    A+ 
Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSAT 909
            GLKT YY  +R   
Sbjct: 724 YGLKTLYYQNTRDGA 738


>gi|66391515|ref|YP_239040.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
 gi|62288603|gb|AAX78586.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
          Length = 751

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 208/793 (26%), Positives = 348/793 (43%), Gaps = 83/793 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205
           ++   G    F  ++L  ++  A  G +++     L      + DG++   ++  A+ ++
Sbjct: 7   VIKSSGVSQPFEKEKLFKVLNWASVG-KNIDVNAFLESVVDLLRDGMTTKQIQGVAIKYA 65

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +  KEP++  V A   +  LR+ V       P           + E+  + ++ G  
Sbjct: 66  ADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVDAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
            + +       D+ Y   ++K+++DF F Y G+Q L  +Y L    NG   E PQ  FM 
Sbjct: 115 DKEILTKWTKADIEYFEENIKHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQYAFML 174

Query: 324 VAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378
           +AM L   E          V+FYN +S       TP +  +G R P  Q SSC +    D
Sbjct: 175 IAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGD 232

Query: 379 DLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            L G   A+   + + KY     G+G +   +R +G+ I G      GVIPF K      
Sbjct: 233 SL-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+  
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVENNRIRHLDYGVQLNDLMYKRLIN 349

Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           N   TLFSPD  +D L+D + +  +  +E      ++      ++I A  L++ ++    
Sbjct: 350 NDYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPTVRKKRIKAADLFQLLVQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSS---SEETAVCNLGSINLLAH 610
           +TG  +I      N    Q    V V  SNLC EI + +S    ++     +G   L+A 
Sbjct: 410 QTGRKYIFNSHHVN---QQGSFSVPVRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLMAI 466

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             +N  D  +  +  R AVR LDN++D   + +  A K+    R++G+G+  + S L   
Sbjct: 467 VLDNA-DVSEFPALTRIAVRALDNLLDYQNYPVAAALKAKQ-RRSLGVGITNYASWLASN 524

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +  Y+   A  +  E ME   ++ + AS+ELA+ERGA   F  + + QG+ PID      
Sbjct: 525 YCDYSEAYAGNV-HELMEAFQYNLLVASMELAKERGACGLFHETKYAQGLLPID---WYC 580

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DELA+       W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    + 
Sbjct: 581 KTVDELAL-PVYNCDWEWLRGEIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKS+  G F   N  + N+  Q D +D       + + G + ++  +             
Sbjct: 640 VKSSKEGSF---NQVVPNQNDQIDFYDYLWTMAKRGNKGYLSHVAVM------------- 683

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTTY 901
                        QK++DQA S N   D    P GK        D +Y   +  G+KT Y
Sbjct: 684 -------------QKFVDQAISANTNYDPANFPDGKVKSETIIDDLLYANYY--GVKTLY 728

Query: 902 YLRSRSATSVEKS 914
           Y  +R     +++
Sbjct: 729 YHNTRDGAGEDEA 741


>gi|157375443|ref|YP_001474043.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           sediminis HAW-EB3]
 gi|157317817|gb|ABV36915.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 762

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 215/809 (26%), Positives = 359/809 (44%), Gaps = 97/809 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+    G   + +  ++  ++  A   L +VS   V   ++   +DG+    +   +I 
Sbjct: 5   LKVTKRSGERETIDLDKIHRVITWAAKDLNNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++     ++ P+         LY E+  + +E G
Sbjct: 65  AAADLISPESPDYQFLSARLAIFHLRKKAFGQ-FEPPK---------LY-EHVVKLVEMG 113

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A +LH+   + +L  L   + + RD  F Y  ++ L  +Y +   +     E  Q  
Sbjct: 114 KYDAHILHDYSRE-ELDTLDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+ +S+F     TP +  +G R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLTYIKNFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRQLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE+     + +V     A  L+  ++  
Sbjct: 350 GGMITLFSPSDVPGLYDAFFEDQDEFERLYHQYEQDDSVRKTQV----KAAELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        +    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       D  +L      AVR LDN++D   + I  A+KS+   R +G+G++ F
Sbjct: 466 ALNLGA-----IKDLSELEPLADLAVRALDNLLDYQDYPITAAQKSSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  SF  + + +G+ PI
Sbjct: 521 ANYLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPSFHETSYSKGILPI 580

Query: 724 DSIGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           D+    L ++ DE L M+      W+ L++ +   G+RNS   A+ P+ T + I   +  
Sbjct: 581 DTYKRHLDQICDEPLHMD------WETLRQDIVQHGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VKS+  G           +LKQ       ++ D   +  S   + ++P++ 
Sbjct: 635 IEPPRGLISVKSSKDG-----------QLKQ-------VVPDFDKYQYSYELLWQMPNNE 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQ 891
             +                   QK++DQA S N   D PS   G+K+       D +   
Sbjct: 677 GYLQLVGL-------------MQKFVDQAISANTNYD-PSRFEGQKVPMQVLLKDLL--N 720

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           A+ +G+KT YY  +R   +   S +  V+
Sbjct: 721 AYKLGVKTLYYHNTRDGATDSHSDIVSVE 749


>gi|283786034|ref|YP_003365899.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282949488|emb|CBG89101.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 761

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 215/799 (26%), Positives = 348/799 (43%), Gaps = 99/799 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------EFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP ++  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 EEITLFSPSDMPGLYDAFFADQDEFERLYCQYEKDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   N+  + + LA     AVR LD ++D   + I  A++     R +G+G++ + 
Sbjct: 467 FNLGA--INSLEELEDLAV---LAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D +A +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDAIA-SEPLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G            L+Q       ++ D ++    +GN           
Sbjct: 638 PRGYVSIKASKDG-----------ILRQ-------VVPDYEH----LGN----------- 664

Query: 845 HATAFEIDPMW-------LIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYR 890
              A+E+  +W        ++     QK+IDQ+ S N   D    PSGK    +L     
Sbjct: 665 ---AYEL--LWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLL 719

Query: 891 QAWLMGLKTTYYLRSRSAT 909
            A+  G+KT YY  +R   
Sbjct: 720 TAYKFGVKTLYYQNTRDGA 738


>gi|124516151|gb|EAY57659.1| ribonucleotide reductase [Leptospirillum rubarum]
          Length = 732

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 173/621 (27%), Positives = 282/621 (45%), Gaps = 86/621 (13%)

Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMC 353
           L++L  RY        + E P+  F R+A  +A    + +E+E  A E+Y  ++S  F+ 
Sbjct: 14  LKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFMASLDFLP 73

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ +R  GA 
Sbjct: 74  NSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSRLRPKGAV 133

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +     D 
Sbjct: 134 VRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCKM----DL 189

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  + N +  I D+FM+ V ++  + L +P     +  L  +E                
Sbjct: 190 TQVTNFNISVAITDVFMQAVKEDGEYDLIAPHNGEVVGRLRARE---------------- 233

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             VF KI+  A         +  G P + F D  N  +P        ++N C E  L   
Sbjct: 234 --VFDKIAHNA---------WANGEPGLFFIDTANRANPTPSRWTYEATNPCGEQVLGPY 282

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 CNLGSINL  H  ++     + D+++L  ++  AVR LDNV+D N   I +   
Sbjct: 283 ES----CNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRFPIPELAA 338

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +LA+  G +
Sbjct: 339 VNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDLAKVHGPF 398

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++G            IG                               RNS+ + IAP
Sbjct: 399 PYYEG------------IGTRK----------------------------RNSHLLTIAP 418

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYH 827
           T TI+ I   S   +P +  ++ K+ M G        +   + +R+  W + +   +  +
Sbjct: 419 TGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEIVARREGFWSDGLAEKIVQN 478

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
            GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E + + ++
Sbjct: 479 HGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQEATVEDVE 538

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
             Y  ++ +G K     R  S
Sbjct: 539 DAYLLSFELGCKGITVYRDGS 559


>gi|291287794|ref|YP_003504610.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884954|gb|ADD68654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 761

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 168/621 (27%), Positives = 279/621 (44%), Gaps = 77/621 (12%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNLLSSFH 350
           + +L  RY    I+G  +E P   F RVA+ +A  +   +K       A  FY  +++  
Sbjct: 21  ITVLEKRYLKRDISGKPVEKPIDMFRRVALNIAEADKNYDKDADILSTATAFYEQMAALK 80

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QL++CF+  V D L  IF A++  A++ K  GG G  ++ +R  
Sbjct: 81  FLPNSPTLMNAGRELQQLAACFVLPVDDSLEAIFEAVKNTALIHKSGGGTGFSFSRLRPK 140

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G + F+ V +     + QGG R+GA    L   H D+ EF+  +    
Sbjct: 141 DDVVKTTKGVSSGPVSFMTVFDAATETIKQGGTRRGANMGILRVDHPDIMEFIYAK---- 196

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +D+ +  + N +  I + FM+ V  +  + L++P                          
Sbjct: 197 EDKTKLTNFNLSVGITEKFMQAVLNDTDYDLYNPKTG----------------------- 233

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               K   K+ A  ++  M+ + +E G P I + D  N  +P    G + S+N C E  L
Sbjct: 234 ----KTAGKLKAKEVFDTMVQLAWEGGDPGIVYLDRINAENPTPKEGDIESTNPCGEQPL 289

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGSINL  +  + + D++ L  TI  AV  LDNVID+N + I++     
Sbjct: 290 LPYES----CNLGSINLGKYVKDGKIDWEDLEKTIEVAVHFLDNVIDMNKYPIQQINDQT 345

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLGLMG+   L +L IPY + EA ++A++ M+FI       S  LA  RG + S
Sbjct: 346 KRNRKIGLGLMGWADMLAMLAIPYNTDEATDLAEKVMQFIRDKGREKSSALAVIRGDFPS 405

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           FK S++ +  F                                    MRN+    IAPT 
Sbjct: 406 FKDSIYPKMGFK----------------------------------NMRNATITTIAPTG 431

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+ I   S  I+P +   + +  M  +  V  S +  ++ +R+ +    + +     G+
Sbjct: 432 TISIIGSCSSGIEPYFAIAFYRQVMDNNKLVEVSPVFKDIAKREGFLSDELLEKVAETGT 491

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
              +  +P+  ++   T+ EI P W  +  +  QK+ D A S  + + +E + + +   Y
Sbjct: 492 AHGLSMVPEKWQEAFVTSHEITPFWHTKMQAAFQKYTDNAVSKTVNFPNEATIEDVKKTY 551

Query: 890 RQAWLMGLKTTYYLRSRSATS 910
             ++ +G K T   R  S T 
Sbjct: 552 LLSYNLGCKGTTIYRDGSRTG 572


>gi|323494791|ref|ZP_08099890.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
 gi|323310984|gb|EGA64149.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
          Length = 760

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 215/796 (27%), Positives = 344/796 (43%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDEYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSKFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK    + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP---SIKK-ETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL +    +  D+++L++ +   VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGS--IKSLDDFEELSNLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFDETNYAKGLMPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDVDLICDEPLHYDWDGLRQEIMTHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894
             +H                  QK++DQA S N   D     SG    KKL      A+ 
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
            G+KT YY  +R   S
Sbjct: 724 FGVKTLYYHNTRDGAS 739


>gi|303238293|ref|ZP_07324829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
 gi|302594339|gb|EFL64051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
          Length = 778

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 188/671 (28%), Positives = 305/671 (45%), Gaps = 113/671 (16%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE----KEKRAVE--FYNLLSSFH 350
           +++L  RY     NG  +E P+  FMRVA  +AL + +    KE +A+E  FY+++ +  
Sbjct: 8   VKVLEKRYLSKDENGCLLEDPKGMFMRVAKAVALADKDFVSAKELKAIEQEFYDMMLNLE 67

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  ++ +R  
Sbjct: 68  FLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFSFSRLRQK 127

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K+  
Sbjct: 128 GASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFISCKKDNS 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D      + N +  I + FM  V     + L  P                          
Sbjct: 188 D----ITNFNISVGITEKFMSAVEAAGDYDLIDPHSG----------------------- 220

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               K   K++A  ++  ++ M +  G P I F D  N  +    +G + S+N C E  L
Sbjct: 221 ----KTVGKLNARYVFDIIIDMAWNNGEPGIIFLDRLNKDNVTPELGNIESTNPCGEQPL 276

Query: 591 NSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    CNLGSINL     N     + DYDKL +T R AV  LDNVID+N + + + 
Sbjct: 277 LPYE----ACNLGSINLSLMIKNTDGVPEVDYDKLGNTARKAVHFLDNVIDVNKYPLPEI 332

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +     R IGLG+MG+   L  L+I Y S +A+ +A++ M FI   +  AS+ELA+++G
Sbjct: 333 DEMTRGTRKIGLGVMGWADMLCKLNIAYNSQKAIALAEKIMHFIQEESRKASIELAEKKG 392

Query: 707 AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            +  +  S++ D G                                    I +RN+    
Sbjct: 393 VFPHYDKSIYKDLG------------------------------------IKIRNATTTT 416

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----------FTVVNSFLVNELKQRD 814
           IAPT T++ I GVS  I+P +   Y+++ M  D             V++ F  +EL +R 
Sbjct: 417 IAPTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELIEVNPLFKQIAVIDGFYSDELMRR- 475

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                       + G+I     IP  ++ + AT+ +I P W ++  +  Q++ D A S  
Sbjct: 476 ----------IANKGTIHGFPEIPKSVQSVFATSHDISPEWHVKMQAAFQRYTDNAVSKT 525

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L +E + + +  ++  A+    K     R  S   ++   +  V GK     V +   
Sbjct: 526 VNLRNEATKEDVSEVFWHAYKTYCKGVTIYRDGS-RDLQVLNIGKVKGKEQEATVEE--- 581

Query: 934 STHSLGIPSSC 944
              S+ IP+ C
Sbjct: 582 ---SVEIPTKC 589


>gi|238751210|ref|ZP_04612704.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238710484|gb|EEQ02708.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 761

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 208/793 (26%), Positives = 341/793 (43%), Gaps = 87/793 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P K   H  + +    + +++ E 
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLFAHVTKMVDMGKYDKHLLED 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A    E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 123 YTAEEF-EQMDTF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVSACL-FSNYPRETRLDYIKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+   
Sbjct: 351 DDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPID 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L  + DE          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDAISDE-----PLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G   ++   +    + ++ ++  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDG---ILRQVVPEYERLKEAYE--LLWDMPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLMG 896
                        ++     QK++DQA S N   D    PSG    K+L       +  G
Sbjct: 678 ------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSAT 909
           +KT YY  +R   
Sbjct: 726 IKTLYYQNTRDGA 738


>gi|195977667|ref|YP_002122911.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974372|gb|ACG61898.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit NrdE
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 724

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 188/680 (27%), Positives = 317/680 (46%), Gaps = 80/680 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y++ F+F   +G    Y  Y L  ++GS  +  + F  R  M              +  +
Sbjct: 84  YQQKFSFLSLMGAMKFYQSYALKTLDGS--QYLEHFEDRAVMNALFLANGDPDLVRDLID 141

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+   
Sbjct: 142 QILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FL
Sbjct: 202 LTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522
           D ++   D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+  +IA 
Sbjct: 262 DTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAI 318

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+R      IK    ISA  L++ +  + FE+G+P++ F D  N R+P    G +  
Sbjct: 319 TEEYDRLVANPAIKK-TYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVM 377

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S++             E   CNLGSIN +A    +   +++L   I T++
Sbjct: 378 SNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSIN-IAEAMKHAAGFEQL---IATSI 433

Query: 630 RVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LD+V    D++C  ++EK   +NH   A+GLG M     L   HI Y S EAV+  D 
Sbjct: 434 RALDHVSRASDVSCAPSVEKGNAANH---AVGLGAMNLHGFLATNHIFYDSAEAVDFTDL 490

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELA 737
               ++++A  AS +LA+E+GA++ F+ S +  G +               +A + +   
Sbjct: 491 FFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYG 550

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+     
Sbjct: 551 FRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHL 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               V ++               ISD               D+       A+E+ P  +I
Sbjct: 611 GRIYVPAY--------------QISD---------------DNYAYYERGAYEVGPEPII 641

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R      +  L
Sbjct: 642 NIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR------QDIL 695

Query: 917 KGVDG--KLNAVPVTDPNSS 934
           +G +   +   V +TD N+S
Sbjct: 696 EGSEQYEEDTIVALTDTNAS 715


>gi|51595598|ref|YP_069789.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588880|emb|CAH20494.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
          Length = 762

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 215/809 (26%), Positives = 347/809 (42%), Gaps = 93/809 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P    H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVSACL-FSGYPRESRLDYIKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    VV  +   +     LW      ++  +DG             
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEYERLKGAYELLW------EMPNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895
                         ++     QK++DQA S N   D    PSG    K+L       +  
Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSR-SATSVE---KSTLKGVD 920
           G+KT YY  +R  A  V+   +S+L G D
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSSLPGDD 753


>gi|261253083|ref|ZP_05945656.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
 gi|260936474|gb|EEX92463.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
          Length = 760

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 214/796 (26%), Positives = 339/796 (42%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y + +  T H+       +  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARMVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ V+  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVSACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE      +      + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSVKK----ETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDLEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLRASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCDEQLHYDWDGLREEIVTHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894
             +H                  QK++DQA S N   D     SG    KKL      A+ 
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
            G+KT YY  +R   S
Sbjct: 724 YGVKTLYYHNTRDGAS 739


>gi|22126851|ref|NP_670274.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45440762|ref|NP_992301.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108806925|ref|YP_650841.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108812923|ref|YP_648690.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145599748|ref|YP_001163824.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|149366795|ref|ZP_01888829.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|153949921|ref|YP_001401733.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420851|ref|YP_001605846.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|165924688|ref|ZP_02220520.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938388|ref|ZP_02226946.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166009893|ref|ZP_02230791.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211738|ref|ZP_02237773.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400331|ref|ZP_02305844.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419736|ref|ZP_02311489.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423852|ref|ZP_02315605.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025072|ref|YP_001721577.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|186894661|ref|YP_001871773.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928373|ref|YP_002346248.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|229841158|ref|ZP_04461317.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843263|ref|ZP_04463409.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894121|ref|ZP_04509307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|229903353|ref|ZP_04518466.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|270487163|ref|ZP_06204237.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294503228|ref|YP_003567290.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21959883|gb|AAM86525.1|AE013899_2 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Yersinia
           pestis KIM 10]
 gi|45435620|gb|AAS61178.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776571|gb|ABG19090.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Nepal516]
 gi|108778838|gb|ABG12896.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Antiqua]
 gi|115346984|emb|CAL19875.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CO92]
 gi|145211444|gb|ABP40851.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|149291169|gb|EDM41244.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|152961416|gb|ABS48877.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353666|gb|ABX87614.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
 gi|165913766|gb|EDR32385.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923748|gb|EDR40880.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165991289|gb|EDR43590.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207509|gb|EDR51989.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962477|gb|EDR58498.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050280|gb|EDR61688.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056701|gb|EDR66464.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751606|gb|ACA69124.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186697687|gb|ACC88316.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679123|gb|EEO75226.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|229689610|gb|EEO81671.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697524|gb|EEO87571.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704006|gb|EEO91019.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|262361267|gb|ACY57988.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
 gi|262365196|gb|ACY61753.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270335667|gb|EFA46444.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294353687|gb|ADE64028.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320015944|gb|ADV99515.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 762

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 215/809 (26%), Positives = 347/809 (42%), Gaps = 93/809 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P    H            + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 114 KYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L      +E R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVSACL-FSGYPRETRLDYIKRFYDAISTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F 
Sbjct: 467 FNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    VV  +   +     LW      ++  +DG             
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEYERLKGAYELLW------EMPNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG----KKLDFIYRQAWLM 895
                         ++     QK++DQA S N   D    PSG    K+L       +  
Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSR-SATSVE---KSTLKGVD 920
           G+KT YY  +R  A  V+   +S+L G D
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSSLPGDD 753


>gi|145634464|ref|ZP_01790174.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229846891|ref|ZP_04466998.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
 gi|145268444|gb|EDK08438.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229810380|gb|EEP46099.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
          Length = 756

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921
           GLKT YY  +R  A  V++    G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|224371724|ref|YP_002605888.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfobacterium autotrophicum HRM2]
 gi|223694441|gb|ACN17724.1| NrdA [Desulfobacterium autotrophicum HRM2]
          Length = 736

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 174/622 (27%), Positives = 276/622 (44%), Gaps = 83/622 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLSSFHFM 352
           L +L  RY      G  +E P   FMRVA  +A  E             FY +++   F+
Sbjct: 17  LTVLKRRYLQKDKRGRVVETPGQMFMRVASYIAAAEKAHGNDPGVYRDLFYGIMARLEFL 76

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QL++CF+  V D + GIF  ++  A++ K  GG G  ++ +R   +
Sbjct: 77  PNSPTLMNAGTDLGQLAACFVLPVEDSISGIFETVKNAALIHKSGGGTGFSFSRLRPKDS 136

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+K+ N     V QGG R+GA  A L   H D+ EF+  ++ + D 
Sbjct: 137 RVGSTGGVASGPVSFMKIFNVATEQVKQGGTRRGANMAVLRVDHPDIMEFILCKQASAD- 195

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + D FM +      + L  P +                          
Sbjct: 196 ---LNNFNISVGVTDEFMVKARTGLPYNLVDPRDG------------------------- 227

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   ++A  ++  M+   +  G P I F D  N  +P   +G + S+N C E  L  
Sbjct: 228 --RVVGTLNATDVFEAMVKQAWHNGDPGIIFLDRINQDNPTPLLGEIESTNPCGEQPL-- 283

Query: 593 SSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  CNLGS+NL       +     DY  L  TI  AVR LD+ ID + + +++   
Sbjct: 284 --LPMEACNLGSVNLAKFVVEKKGKPTIDYASLGKTIALAVRFLDDTIDRSIYPLDEITA 341

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MGF   L  L +PY S  AV +A+E M F+   A  AS  LAQERG +
Sbjct: 342 MVRGNRKIGLGVMGFADLLFALELPYNSDRAVALAEEVMAFVQSEARKASRALAQERGVF 401

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F     D+ VF  D                             K    RN+    IAP
Sbjct: 402 ENF-----DKSVFRND-----------------------------KDRRFRNATVTTIAP 427

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   ++++ M  + F  VN   +   + +  + EA++  +   
Sbjct: 428 TGTLSIIAGSSSGIEPLFALSFIRTIMDNETFLEVNPHFMAVAQAQGFYSEALMEKIA-K 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKL 885
            G+I  +  IP+ ++K+  TA ++ P W ++  +  QK  D A  +++NL  D  +   +
Sbjct: 487 TGTIKGMTEIPESVRKVFVTAHDVSPAWHVKMQAAFQKHTDNAVSKTVNLPRDA-TEHDV 545

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             IY  A+  G K     R  S
Sbjct: 546 AEIYTSAFDFGCKGVTIYRDGS 567


>gi|319896902|ref|YP_004135097.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
 gi|317432406|emb|CBY80761.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
          Length = 756

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKQLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921
           GLKT YY  +R  A  V++    G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|145629253|ref|ZP_01785052.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|144978756|gb|EDJ88479.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|309750763|gb|ADO80747.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2866]
          Length = 756

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921
           GLKT YY  +R  A  V++    G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|78484808|ref|YP_390733.1| ribonucleotide-diphosphate reductase subunit alpha [Thiomicrospira
           crunogena XCL-2]
 gi|78363094|gb|ABB41059.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 760

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 215/808 (26%), Positives = 349/808 (43%), Gaps = 114/808 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G     + +++  ++  A  GL++VS   V   ++   YDG+  SD+   +I 
Sbjct: 6   MNVAKRNGETEPLDLEKIHRVITWAAEGLENVSVSEVELRSHIQFYDGMKTSDIHETIIK 65

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR++                     P     ++ + 
Sbjct: 66  SAADLISESAPDYQHLAARLAIFHLRKKAFDR---------------FTPPTLFEHVNKM 110

Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315
           V+ RL    + D      FD   L N ++++RD  F Y  ++ L  +Y +   + G   E
Sbjct: 111 VRNRLYDPQIQDDYTKAEFD--ELDNYIQHDRDMNFSYAAVKQLEGKYLVQNRVTGKIYE 168

Query: 316 MPQAFFMRVAMGLAL---KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP-- 366
            PQ  +M + M L      + E  K  ++    FY+  S+F     TP +  SG R P  
Sbjct: 169 SPQFIYMLIPMSLFAHYPNDAEPGKTRLDYVKRFYDAASNFKLSLPTPIM--SGVRTPTR 226

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           Q SSC L    D L  I               G+G +   +R LG+ I G      G+IP
Sbjct: 227 QFSSCVLIECGDSLDSINATSSSIVKYVSQRAGIGVNVGQIRALGSEIRGGEAYHTGMIP 286

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+K       + +QGG R GA   +   WH++VE  + L+ N G +  R   ++    + 
Sbjct: 287 FIKHFQTAVKSCSQGGVRGGAATLFFPIWHLEVESLIVLKNNRGVEENRARHLDYGVQVN 346

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAV 543
            L  +R+ +    TLFSP +V  L+D +    +EFE  Y+ YE  AD    K  + + AV
Sbjct: 347 KLMYQRMIEGGNITLFSPSDVPGLYDAFFEDQEEFERLYKIYE--ADDTIRK--KTMKAV 402

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEIT-----LNSSSE 595
            L+ ++     +TG  +I   D  N  S   P++    +H SNLC EIT     LNS  +
Sbjct: 403 DLFTQVAQERAQTGRIYIQNVDHSNTHSSFDPKK--APIHQSNLCLEITLPTHPLNSVDD 460

Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E A+C L + NL A    +     +L       VR LD+++D   + +E A+K++  
Sbjct: 461 PEGEIALCTLSAFNLGALEDLD-----ELDELSDLIVRALDSLLDYQDYPVEAARKASMG 515

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +G+G+      L   H+ Y+   A  +  ++ E I ++ + AS+ L++E G    F+
Sbjct: 516 RRTLGVGVTNLAYYLAKNHVKYSDGSANNLVHKAFEAIQYYLLKASLNLSKEYGKCDFFE 575

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTA 770
            + + QG+ PID+       + EL    T  L   W+ L+  ++  G+RNS   A+ P  
Sbjct: 576 DTKYAQGILPIDT------YKKELDEFCTEPLHYDWETLRSEIQKHGLRNSTMTALMPCE 629

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           T + I   +  I+P    + VK++  G    VV  F     +   LW             
Sbjct: 630 TSSQITNSTNGIEPPRGYVSVKASKDGILKQVVPGFKEFRDQYELLW------------- 676

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GK--- 883
                 +IPD+   +                   QK++DQA S N   D      G+   
Sbjct: 677 ------QIPDNKGYLQLVGI-------------MQKFVDQAISANTNYDPAKFEDGRVPI 717

Query: 884 KL---DFIYRQAWLMGLKTTYYLRSRSA 908
           KL   D +Y  A+  GLKT YY  +R  
Sbjct: 718 KLVLQDLLY--AYKAGLKTLYYHNTRDG 743


>gi|82407441|pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|82407442|pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|83753672|pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753673|pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753674|pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753675|pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753676|pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753677|pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|85543938|pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543939|pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543940|pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543941|pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543942|pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543943|pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543944|pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|85543945|pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|301598861|pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598862|pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598863|pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598864|pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598865|pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
 gi|301598866|pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
          Length = 644

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 190/641 (29%), Positives = 304/641 (47%), Gaps = 108/641 (16%)

Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345
           IL DRYF+  ++G+ +E           +       +  + K+ EK  R  E    F+ +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G   +H                           LS+CF+  V D
Sbjct: 82  LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K            NT   + + F      + G
Sbjct: 202 KQGSRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  ++  LY ++ E+     E    R  I+  +K+    L+RK+ T  +++G 
Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617
           P + F    N   P      ++S+N C EI L+    +   CNLGSI++ A F NN F D
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S 
Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733
           EA + A   M FI+ HA   S EL +E+G +   + S +   D  V F +       E+R
Sbjct: 411 EARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + M +  R               RN   + IAPT +I+NI   S  ++P++   Y + 
Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               D T      VN++ +  L  E +  I       GS+ +I  +P+ +KK+   A +I
Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575

Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878
           DPM   L++ A +R       K I+  QS      LN+YL+
Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616


>gi|148825801|ref|YP_001290554.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|148715961|gb|ABQ98171.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|309972946|gb|ADO96147.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2846]
          Length = 756

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/807 (25%), Positives = 345/807 (42%), Gaps = 90/807 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921
           GLKT YY  +R  A  V++    G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|148262268|ref|YP_001228974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
 gi|146395768|gb|ABQ24401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 565

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 179/623 (28%), Positives = 280/623 (44%), Gaps = 78/623 (12%)

Query: 298 LQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAV----EFYNLLSSFHFM 352
           L++L  RY L     R IE P+  F R+A  +A  E     RA      FY LLSS  F+
Sbjct: 8   LKVLRARYLLKDEQGRVIESPREMFGRIARSVAEAEKFYGDRACYWEERFYELLSSLRFL 67

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PT+ N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++ +R    
Sbjct: 68  PNSPTIMNAGKSPGQLAACFVLPVEDSMPGIFDTLKNAALILQSGGGTGFSFSRLRPKAD 127

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+K+ N     + QGG R+GA    L   H DV EF+ +++    D
Sbjct: 128 IVRSTGGIASGPVSFMKIYNTATDVIKQGGARRGANMGILRIDHPDVLEFIRVKR----D 183

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
            +   + N +  I D +M+ +  +  + L +P        L   E               
Sbjct: 184 AKELANFNISLAITDAYMEALRADGEYQLVNPRTGKSAGRLRAGE--------------- 228

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
              VF +I A A W        ETG P + F D  N  +P    G   S+N C E  L  
Sbjct: 229 ---VFGEIVASA-W--------ETGDPGLVFIDRLNRANPTPAAGSFESTNPCGEQPLLP 276

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  C LGS+NL AH      DYD L   +  AVR LD+ ID+N + +   ++ +  
Sbjct: 277 YE----ACVLGSLNLAAHVKGGVIDYDALGRDVAVAVRFLDDTIDVNSYPLPAIERMHKG 332

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IGLG+MG+   L LL IPY   +A  +A E M FI   +  AS  LA+ERG + +F 
Sbjct: 333 NRKIGLGVMGWADMLVLLGIPYDHEKAFRLAREVMRFIRDASREASCALAKERGVFPNFA 392

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS++D    P                                   +RN+    IAPT T+
Sbjct: 393 GSIYDAPHMP----------------------------------RLRNATTTTIAPTGTL 418

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   S  I+P +   Y +  +  +   +N + +   K++  +   +  ++    G++ 
Sbjct: 419 STIADCSSGIEPLFALAYKRFVLDSELVEINKYFLQMAKEQGFYSVELFQEV-MRRGNLR 477

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQ 891
            ++ IP  +K++  TA EI P   IE  +  Q++ D A S  + L   + K+ +   Y  
Sbjct: 478 QVKGIPSRVKRLFRTALEILPEHHIEMQAAFQEYTDNAVSKTINLPNRAKKEDVARAYLL 537

Query: 892 AWLMGLK--TTYYLRSRSATSVE 912
           A+  G K  T +   +R  T V+
Sbjct: 538 AYEKGCKGITVFRYGARRGTLVK 560


>gi|294140835|ref|YP_003556813.1| ribonucleoside-diphosphate reductase subunit alpha [Shewanella
           violacea DSS12]
 gi|293327304|dbj|BAJ02035.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           violacea DSS12]
          Length = 762

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 211/797 (26%), Positives = 349/797 (43%), Gaps = 93/797 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MKVTKRSGERETIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISPEAPDYQFLSARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVESG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + + E     +L  L   + + RD  F Y  ++ L  +Y +   +     E  Q  +
Sbjct: 114 KYDQHILEDFSREELDILDGYVDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ + +    FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G +PF K       +
Sbjct: 232 DSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D + +   EFE  Y  YE  AD    K   +I A  L+  M+    
Sbjct: 352 MISLFSPSDVPGLYDAFFEDQDEFERLYLQYE--ADNSVRKT--QIKATELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L ++
Sbjct: 408 STGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNINDPDGEIALCTLSAL 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         D  +L      AVR LDN++D   + I  A++S+   R +G+G++ F +
Sbjct: 468 NL-----GKIKDLSELEPLADLAVRALDNLLDYQDYPIIAARQSSMNRRTLGIGVINFAN 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  I  ++ E I ++ + AS+ LA+E+G    F  + + +GV PID+
Sbjct: 523 YLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEKGPCPLFHETTYSKGVLPIDT 582

Query: 726 IGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               L ++ DE L M+      W+ L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 YKRSLDKICDEPLHMD------WETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G           +LKQ       ++ D + +  S   + ++P++   
Sbjct: 637 PPRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQHSYELLWQMPNNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAW 893
           I                   QK++DQA S N   D PS   G K+       D +   A+
Sbjct: 679 IQLVGL-------------MQKFVDQAISANTNYD-PSRFEGNKVPMQVLLKDLL--NAY 722

Query: 894 LMGLKTTYYLRSRSATS 910
            +GLKT YY  +R   S
Sbjct: 723 KLGLKTLYYHNTRDGAS 739


>gi|260778826|ref|ZP_05887718.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604990|gb|EEX31285.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 760

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 216/796 (27%), Positives = 343/796 (43%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y + +  T H+       +  R I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVSRLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE       IK    + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP---SIKK-ESVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPLFGETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDLDLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   +     LW      ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEFTEYKDNYELLW------NIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWL 894
             +H                  QK++DQA S N   D     SG    KKL      A+ 
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYDPSRFESGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
            G+KT YY  +R   S
Sbjct: 724 YGVKTLYYHNTRDGAS 739


>gi|145631491|ref|ZP_01787260.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|144982921|gb|EDJ90434.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
          Length = 756

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 203/793 (25%), Positives = 337/793 (42%), Gaps = 89/793 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSA 908
           GLKT YY  +R  
Sbjct: 725 GLKTLYYQNTRDG 737


>gi|219849633|ref|YP_002464066.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aggregans DSM 9485]
 gi|219543892|gb|ACL25630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aggregans DSM 9485]
          Length = 820

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 188/664 (28%), Positives = 307/664 (46%), Gaps = 61/664 (9%)

Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351
           +L  RY L + +G  IE P+  F RVA  +A  +        + E+RA  FY+L++  +F
Sbjct: 18  VLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASSEQVEERAERFYHLMTQGYF 77

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  ++ +R   
Sbjct: 78  EPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFSFSRLRPRN 137

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+  + +T  
Sbjct: 138 DVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFITCKLDT-- 195

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              +  + N +  + D FM+ V +         DE  DL +    +  IA  +  +    
Sbjct: 196 --TKITNFNISVAVTDAFMRAVDR---------DEEYDLINPRTGQVHIASRDGLKHPLT 244

Query: 532 GEIKV----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           G++ V      ++ A  ++  ++     TG P + F D  N  +P  H+G   ++N C E
Sbjct: 245 GDVLVPPGQPMRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGAYEATNPCGE 304

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
             L +      VCNLGSINL     A+   D+D L   +  + R LDNVID N + +E+ 
Sbjct: 305 QPLLAYD----VCNLGSINLGKFVTADKTIDWDYLREVVHESTRFLDNVIDANHYPLEQI 360

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
              +   R IGLG+MG+   L  L IPY S +A+E+A + M FI   +  AS +LA+ERG
Sbjct: 361 THLSQRIRRIGLGVMGWADMLVRLGIPYNSHDAIELARKVMHFIDEESKVASEQLARERG 420

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  ++ S+W                R + +  R  RL             +RN N   +
Sbjct: 421 PFPEWEYSIWGPDA--------TCARRSDGSRIRPQRL-------------LRNCNVTTV 459

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT TI+ I G S  I+P +   + +         +N   V + K R+ W    + +   
Sbjct: 460 APTGTISIIAGCSSGIEPLFAIAFWRYQADSRMLDINQDFVAQAK-REGWYSPELMERIA 518

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             G I + + +P +++++  TA +I P W +   +  Q++ D A S  + +  E +  ++
Sbjct: 519 DTGHIHHPD-VPAEVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEATPDQV 577

Query: 886 DFIYRQAWLMGLK--TTYYLRSR-----SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
              Y  A+ +G K  T Y   SR     S  S  KS  K         PV        + 
Sbjct: 578 REAYELAFRLGCKGITVYRDGSRENQVLSTGSTGKSESKPAAQSATTTPVELTPRPVPAE 637

Query: 939 GIPS 942
           G+PS
Sbjct: 638 GLPS 641


>gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA)
           [Haemophilus influenzae Rd KW20]
          Length = 781

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 344/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 30  LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 89

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 90  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 147

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 148 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 198

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 199 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 255

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 256 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 315

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 316 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 375

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +  TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 376 SEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 431

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 432 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 491

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 492 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 546

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 547 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 606

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 607 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 662

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 663 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 703

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 704 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 750

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 751 LKTLYYQNTRDGAEDVQEDLDDGCAG 776


>gi|30995466|ref|NP_439801.2| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae Rd KW20]
 gi|260581254|ref|ZP_05849072.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
 gi|1172938|sp|P43754|RIR1_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|260092081|gb|EEW76026.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
          Length = 756

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 344/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +  TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 SEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|76788702|ref|YP_329138.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|77406063|ref|ZP_00783139.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|76563759|gb|ABA46343.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
 gi|77175343|gb|EAO78136.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 722

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 185/657 (28%), Positives = 309/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + F F  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YAKKFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N++S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V    +  +    KK N  + A+GLG M     L   HI Y S EA++  D    
Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           + P  +I  A+  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|260427754|ref|ZP_05781733.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
 gi|260422246|gb|EEX15497.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
          Length = 707

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 193/661 (29%), Positives = 304/661 (45%), Gaps = 70/661 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  ++R F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +   +  A+
Sbjct: 85  DAAFKRKFRFPTFLGAFKYYTSYTLKTRDGKRFLERYEDRVVMVALTLARGD---QALAM 141

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F   + +  F  +TPT  N+G +   +L SCFL  + D++  I   +     L+K  GG
Sbjct: 142 SFMEEIVTGRFQPATPTFLNAGKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 201

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 202 VALMLTNIREHGAPIKGIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 261

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   E  
Sbjct: 262 LRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNEEMYLFSPHDVEKVYGVPFSEIS 321

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  +  E  AD+   K  +KI+A A ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 322 VTEKYAEMVADKHIRK--KKINARAFFQTLAEIQFESGYPYIMFEDTVNRMNPI--AGRI 377

Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI  +N +SE               CNLGS+N+         D     +TI T
Sbjct: 378 TMSNLCSEILQVNEASEFNEDLSYSRMGTDISCNLGSLNIA-----RTMDGPDFGATIET 432

Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V +++   ++   +K N    AIGLG M     L   H+ Y S E +E     
Sbjct: 433 AIRALTAVSEMSSIESVPSIRKGNDESHAIGLGQMNLHGYLAREHVHYGSAEGIEFTSVY 492

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MN 739
              +++HA+ AS  LA+ERG  +  F  S +  G F       D +   A V +  A + 
Sbjct: 493 FAAVAYHALRASCALAKERGETFKGFADSEYASGAFFDKYTSRDWLPENARVAELFADVT 552

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798
             +R  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G 
Sbjct: 553 LPTRDDWAALKADVMAHGLYNRNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGR 612

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ NE                       N+E   D        A+EI P  LI+
Sbjct: 613 VYYPAPFMSNE-----------------------NLEYYRD--------AYEIGPEALID 641

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+   E + + ++     AW  G+KT YY+R R  T++E + ++
Sbjct: 642 TYAAATEHVDQGLSLTLFFPAEATTRDINRAQIYAWKKGIKTIYYVRLRQ-TALEGTEVE 700

Query: 918 G 918
           G
Sbjct: 701 G 701


>gi|1657993|gb|AAB18239.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 857

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 171/574 (29%), Positives = 280/574 (48%), Gaps = 80/574 (13%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G
Sbjct: 221 FEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTG 280

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R     +  T G + G + F+K+ + T   + QGGKR+GA    L   H D+ E
Sbjct: 281 FSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIME 340

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+ L K++  + +   + N +  + D F  ++           D+  DL +   K     
Sbjct: 341 FI-LSKDS--ENKVLSNFNISVGVTDDFFDKLDN---------DDYVDLVNPRTK----- 383

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        K+ ++I A  +W  ++   ++T  P + F D  N ++P ++VG + S
Sbjct: 384 -------------KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIES 430

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINC 640
           +N C E  L         CNLGSINL  +  + +  D+D+L  T+ TA R LD+VID N 
Sbjct: 431 TNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANK 486

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ KK     R IGLG+MGF   L  L IPY S EA+EI ++ M FI+  +  AS  
Sbjct: 487 FPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQA 546

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ER  + ++ GS W++                                   + I MRN
Sbjct: 547 LAEERAVFPAWYGSEWEK-----------------------------------EGIKMRN 571

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           S    IAPT TI+ I G S SI+P +   +V+  ++G +   VN     + ++  ++ E 
Sbjct: 572 STTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEE 631

Query: 820 MISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875
           ++  +       GN+E  +I +++KKI  TA EIDP W +   +  Q++ D   ++++N+
Sbjct: 632 LMRQV----AETGNLENVKINEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINM 687

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             D  + + +   YR A  +  K     R +S T
Sbjct: 688 RSD-ATREDIARAYRMAKDLHCKGITVYRDKSKT 720



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+      +       + L ++ V RL    + 
Sbjct: 4   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARLKDKERP 56

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVR 129
           +    +E+IQD VE  LM S         + + Y+LYRE+R  +R
Sbjct: 57  S----VEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIR 97


>gi|229845067|ref|ZP_04465203.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
 gi|229812039|gb|EEP47732.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
          Length = 756

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 208/807 (25%), Positives = 344/807 (42%), Gaps = 90/807 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +       +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 TYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +   + LWD                   IP +  
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVDG 921
           GLKT YY  +R  A  V++    G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|68250261|ref|YP_249373.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 86-028NP]
 gi|68058460|gb|AAX88713.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae 86-028NP]
          Length = 756

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|329123257|ref|ZP_08251825.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|327471466|gb|EGF16914.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 756

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|226327850|ref|ZP_03803368.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
 gi|225203554|gb|EEG85908.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
          Length = 763

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 212/808 (26%), Positives = 346/808 (42%), Gaps = 97/808 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+   L+ 
Sbjct: 5   LLVTKRDGHKERIDLDKIHRVIAWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++       +P K   H           + ++ G
Sbjct: 65  AAADLISGDTPDYQYLAARLAVFNLRKKAYGQF--EPPKLYDH---------VKKLVDLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R L E     +   + N + ++RD  F Y  ++ L  +YF+   I G   E  Q  +
Sbjct: 114 KYDRHLLEDYTQEEFEQMDNFIVHQRDMNFSYAAVKQLEGKYFVQNRITGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  +  +  +      FYN +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 VLVAACLFSRYPQATRMDYIERFYNAISTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I        G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQ 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+    
Sbjct: 352 DITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSI 605
            TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    N  D ++LA   R AVR LD ++D   + I  AK+     R +G+G++ F  
Sbjct: 468 NLGA--IENLDDLEELA---RLAVRSLDALLDYQDYPILAAKQGAMGRRTLGIGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PID+
Sbjct: 523 YLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDT 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +V  +  ++      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 583 YKKSLDVLTKEPLH----YDWEGLRKDIKEHGLRNSTLSALMPSETSSQISNATNGIEPP 638

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + +K++  G    V                            +   ER+        
Sbjct: 639 RGYISIKASKDGILRQV----------------------------VPEYERL-------- 662

Query: 846 ATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ--- 891
             A+E+  +W + S           QK++DQA S N   D    PSGK  ++ + +    
Sbjct: 663 KGAYEL--LWQMPSIEGYLQLVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLL 720

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+  G+KT YY  +R      +  L+ V
Sbjct: 721 AYKYGVKTLYYHNTRDGADDVQGDLEEV 748


>gi|71282068|ref|YP_269048.1| ribonucleotide-diphosphate reductase subunit alpha [Colwellia
           psychrerythraea 34H]
 gi|71147808|gb|AAZ28281.1| ribonucleoside-diphosphate reductase, alpha subunit [Colwellia
           psychrerythraea 34H]
          Length = 756

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 201/777 (25%), Positives = 337/777 (43%), Gaps = 83/777 (10%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL+ VS   V  +++   YDG+   D+   +I S+  LI +E P+Y  
Sbjct: 20  EKIHRVIAWAADGLEQVSVSQVELKSHIQFYDGIKTEDIHETIIKSAADLISEETPDYQY 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++               E   LY ++  + +E G   + L       D 
Sbjct: 80  LAARLAVFHLRKKAYG----------QFEPPALY-DHVVKLVEAGKYDQHLLADYTKDDF 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK-ETEK 335
            ++++ + + RD  F Y  ++ L  +Y +   ++G   E  Q  ++ V+  L  K   E 
Sbjct: 129 EHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILVSACLFAKYPVES 188

Query: 336 EKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
             R VE FY+ +S F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLRYVEDFYHAISRFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATSSAIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I        G IPF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++       L  +R+ +    TLFSP +V  L+D
Sbjct: 307 PLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSITLFSPSDVPGLYD 366

Query: 513 LY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +    ++FE  Y  YE      +    ++I A+ L+         TG  ++   D CN 
Sbjct: 367 AFFEDQEKFERLYVQYENDDSIRK----KRIKAIELFTLFAQERASTGRIYLQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP       +  SNLC EI L        N  + E A+C L + NL A  +      D+
Sbjct: 423 HSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIALCTLSAFNLGAIDS-----LDE 477

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LD+++D   + I  A+ ++   R +G+G++ +   L    + Y++  A 
Sbjct: 478 LEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINYAYYLAKNGLYYSNGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +   + E I F+ + A+ ELA+E+GA   F  +L  +G+ PID+     +  D++    
Sbjct: 538 NLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPIDT---YKKTIDDIT-GE 593

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + +K++  G   
Sbjct: 594 PLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEPPRGLISIKASKDG--- 650

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                    LKQ       ++ + +   G+   +  IPD+                +E  
Sbjct: 651 --------VLKQ-------VVPEYEKLKGNYELLWNIPDN-------------QGYLELV 682

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLMGLKTTYYLRSRSATS 910
              QK++DQA S N   D    +      +Q       A+ +G+KT YY  +R   S
Sbjct: 683 GIMQKFVDQAISANTNYDPNKFEGGKVPVKQILKDILTAYKLGVKTLYYHNTRDGAS 739


>gi|119774863|ref|YP_927603.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           amazonensis SB2B]
 gi|119767363|gb|ABL99933.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella amazonensis SB2B]
          Length = 782

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 210/787 (26%), Positives = 348/787 (44%), Gaps = 105/787 (13%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  +V  A  GL++VS   V   ++   ++G+    +   +I ++  LI  E P+Y  +
Sbjct: 41  KIHRVVTWAAKGLKNVSVSEVELRSHLQFFEGIPTEAIHETIIKAAADLISPESPDYQFL 100

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + +E G   R + E     +L 
Sbjct: 101 AARLAVFHLRKKAFGQF--EPPKLYDH---------VVKLVEMGKYDRHILEDYTKEELD 149

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KETE 334
            L + + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET 
Sbjct: 150 VLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFAGYPKET- 208

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           + K   +FY+ +S+F     TP +  SG R P  Q SSC L    D L  I         
Sbjct: 209 RLKYVKDFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 266

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 267 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 326

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ +    TLFSP +V  L+D
Sbjct: 327 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENITLFSPSDVPGLYD 386

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE++    +    + + AV L+  M+     TG  ++   D CN 
Sbjct: 387 AFFENQDEFERLYTKYEQEPSIRK----KSLKAVELFSLMMQERASTGRIYVQNVDHCNT 442

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L        + ++ E A+C L ++NL A       + ++
Sbjct: 443 HSPFDSSVAPIRQSNLCLEIALPTKPLDSVDDTNGEIALCTLSALNLGA-----IENLEE 497

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LD+++D   + I+ AK  +   R +G+G++ F + L      Y+   A 
Sbjct: 498 LEGLSDLAVRALDSLLDYQDYPIKAAKLGSMNRRTLGIGVINFANYLAKNGKKYSDGSAN 557

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739
            +  ++ E I F+ + AS+ LA+E+GA  +F  + + QG+ PID+    L ++ DE    
Sbjct: 558 NLTHKTFEAIQFNLLKASMNLAKEKGACPAFHETTYSQGILPIDTYKRDLDKICDE---- 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 614 -PLHLDWEGLRADIKHYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG-- 670

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    +LKQ       ++ D               D+L+     A+E+  +W + S
Sbjct: 671 ---------QLKQ-------VVPDF--------------DELR----NAYEL--LWQMPS 694

Query: 860 -------ASRRQKWIDQAQSLNLYLDEPS--GKKL-------DFIYRQAWLMGLKTTYYL 903
                      QK++DQA S N   D     G+K+       D +   A+ +GLKT YY 
Sbjct: 695 NDGYLQLVGIMQKFVDQAISANTNYDPAKFEGRKVPMQLLLKDLL--TAYKLGLKTLYYH 752

Query: 904 RSRSATS 910
            +R   +
Sbjct: 753 NTRDGAT 759


>gi|89092732|ref|ZP_01165685.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
 gi|89083244|gb|EAR62463.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
          Length = 754

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 225/802 (28%), Positives = 337/802 (42%), Gaps = 103/802 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     + +++  +V  A  GL  VS   V  + +   ++G+   D+   LI 
Sbjct: 5   LMVTKRDGRQEKLDLEKIHKVVIWAADGLNAVSPSEVELKAHLQFFEGMKTFDIHETLIK 64

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR+      ++ P+   H   Q          +E G
Sbjct: 65  SAADLISEDAPDYQYLAARLAIFHLRKRAFGQ-FEPPRLFDHVSAQ----------VEAG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E   + +   L   L ++RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 114 RYDKHLIEDYSEAEWETLNGYLDHKRDMNFSYSAVKQLEGKYLVQNRVTGEVYESPQILY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           M VA  L   +  KE R      FY+  S F     TP +  +G R P  Q SSC L   
Sbjct: 174 MLVAACL-FADYPKETRLDYVKRFYDATSLFKLSLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SASIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L   R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRK 548
            +    TLFSP EV  L+D +     EFE  Y  YE   +       RK  I AV L+  
Sbjct: 348 IKGGDITLFSPHEVPGLYDAFFADQDEFERLYVQYENDPN------IRKQTIKAVELFGI 401

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           +     +TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+
Sbjct: 402 LAAERAQTGRIYIQNVDHCNTHSPFDPTVAPVKQSNLCLEIALPTKPLQHVNDEEGEIAL 461

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A       D D+L +     VR LDN++D   + I  A  S    R +G+G
Sbjct: 462 CTLSAFNLGA-----LEDLDELDNLADLIVRALDNLLDYQDYPIPAAHTSTMNRRPLGVG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +  F   L    + Y+   A  +  ++ E + ++ + AS  LA+ERG    F  +++ +G
Sbjct: 517 VTNFAYYLAKNGVKYSDGSANGLVHKTFEAVQYYLLKASNALAKERGKCPKFDETVYSKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+     EV DE          W+ L++ +K  G+RNS   A+ P  T + I   +
Sbjct: 577 LLPIDTYK--REV-DEFCEEPLHYF-WETLREDIKEFGLRNSTLTALMPCETSSQITNST 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRD--LWDEAMISDLKYHDGSIGNIER 836
             I+P    + VK++  G    VV  +   EL+++   LWD                   
Sbjct: 633 NGIEPPRGYVSVKASKDGIMKQVVPGY--TELREQYELLWD------------------- 671

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFI 888
           IP++   +                   QK++DQ+ S N   D PS         K+L   
Sbjct: 672 IPNNTGYLQLVGI-------------MQKFVDQSISANTNYD-PSLFPNDKVPMKQLLQD 717

Query: 889 YRQAWLMGLKTTYYLRSRSATS 910
              A+  G+KT YY  +R   S
Sbjct: 718 LLTAYKYGVKTLYYHNTRDGAS 739


>gi|326783481|ref|YP_004324016.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004984|gb|ADO99374.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 769

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 192/692 (27%), Positives = 313/692 (45%), Gaps = 46/692 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G     +  ++  + E AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRSGEKTPLDLDKIHAMAEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V             H  +C+    +    ++
Sbjct: 67  RSANDLISLESPNYQFVAARLLLFSLRKAVYNGHPDGHPPLLEHVKKCVDLGVY----DD 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G+ ++   E         L + + ++RD+ F Y G++ + D+Y +    +G   E PQ  
Sbjct: 123 GILSKYSKEEWEK-----LNSFMDHDRDYLFTYAGIRQVADKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           +M VA  L  ++ +K  R     ++Y+ +S       TP +  +G R P  Q +SC L  
Sbjct: 178 YMMVAATL-FQDDDKFYRLEYVKKYYDAISKHRLNIPTPIM--AGVRTPLRQFASCVLVD 234

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T 
Sbjct: 235 VDDTLDSIFSSDMAIGHYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATV 294

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
               Q G R G+   +   WH ++++ + L+ N G +  R   ++ +     LF +R   
Sbjct: 295 RCCTQNGIRGGSATVHFPIWHQEIQDIIVLKNNKGTEDNRVRKLDYSIQFSKLFYERFIS 354

Query: 496 NAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           N   +LFSP +V  L+D +G + F+  Y +YE      ++ + R+ I A  L   +L   
Sbjct: 355 NGIISLFSPHDVPGLYDAFGTDSFDSLYVDYE-----SDLSIPRQTIGAQELILSLLKER 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSIN 606
            ETG  +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN
Sbjct: 410 AETGRIYIMNIDHCNTHSSFKD--KVNMSNLCQEITLPTDPINHIDGLGEIALCILSAIN 467

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +           D+L      AVR LD +ID   + ++ A+ S    R++G+G +G    
Sbjct: 468 V-----GKLKSLDELDELCELAVRGLDALIDYQQYPVKAAENSTKNRRSLGIGFIGLAHY 522

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+ 
Sbjct: 523 LAKHGANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTY 582

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               EV DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P  
Sbjct: 583 K--KEV-DEIVPNDLS-CDWEYLRGRIVEYGLRHSTLSAQMPSESSSVVSNATNGIEPPR 638

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
             L VK +  G    +V S+   +     LWD
Sbjct: 639 DYLSVKKSKKGPLKQIVPSYTTLKGAYTLLWD 670


>gi|332290531|ref|YP_004421383.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
 gi|330433427|gb|AEC18486.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
          Length = 756

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 215/796 (27%), Positives = 346/796 (43%), Gaps = 99/796 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L++   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LRVTKRDGRLEPINLDKIHRVITWAAEGLNNVSVSQVELRSHIQFYEGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI K+ P+Y  + AR  +  LR++             H E   LY E   R +  G
Sbjct: 65  SAADLISKDTPDYQYLAARLAIFHLRKKAFG----------HFEPPRLY-EQVKRLVRMG 113

Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
               + L+  S  ++D   +   L + RD  F Y  ++ L  +Y +   + G   E  Q 
Sbjct: 114 KYDASLLVDYSREEWD--EMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
            ++ VA  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L 
Sbjct: 172 LYILVAASL-FAQYPKETRLNYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLI 228

Query: 375 TVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
              D L  I      +A + KY     G+G +   +R LG+ I        G IPF K  
Sbjct: 229 ECDDSLDSINAT---SAAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHF 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +
Sbjct: 286 QTAVKSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQ 345

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ + A  TLFSP +V  L+  +    ++FE  Y  YE+  D  +    R + A+ L+  
Sbjct: 346 RLIKGADITLFSPSDVPGLYAAFFADQEKFEQLYLKYEQDPDIRK----RSVKAIELFSL 401

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           ++     TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+
Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLQHIHDENGEIAL 461

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L + NL A   NN    D+L      AVR LD ++D   + ++ A+      RA+G+G
Sbjct: 462 CTLSAFNLGA--LNN---LDELEDLADLAVRALDALLDYQNYPVKAAEIGAMGRRALGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           ++ +   L    + Y+   A ++   + E I ++ + AS +LA+E G    F  + + +G
Sbjct: 517 VINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASNQLAKEFGPCKFFDETTYAKG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + PID+       +D  ++ +      W+ L+K ++  G+RNS   A+ P+ T + I   
Sbjct: 577 ILPIDTYK-----KDVDSLTKEPLHYDWESLRKEIQEFGLRNSTLTALMPSETSSQISNA 631

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERI 837
           +  I+P    + +K++  G    V     N  +  + LWD                   I
Sbjct: 632 TNGIEPPRGFVSIKASKDGILRQVVPDYENLSENYELLWD-------------------I 672

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ-- 891
           P++   +H  A               QK+IDQ+ S N   D    E     +  + +   
Sbjct: 673 PNNDGYLHLVAI-------------MQKFIDQSISANTNYDPQRFEDGKVPMKVLLKDLL 719

Query: 892 -AWLMGLKTTYYLRSR 906
            A+  G+KT YY  +R
Sbjct: 720 TAYKYGVKTLYYQNTR 735


>gi|15602582|ref|NP_245654.1| ribonucleotide-diphosphate reductase subunit alpha [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721011|gb|AAK02801.1| NrdA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 756

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 209/809 (25%), Positives = 344/809 (42%), Gaps = 94/809 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG L   +  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGHLEPIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P+   H +      +Y        
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A L+  +  ++D   + + L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DPALLVDYTREEWD--EMDSYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K   + + +    FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPTETRLSYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++    
Sbjct: 352 DITLFSPSDVPGLYEAFFADQDKFEQLYLQYEQDPTIRQ----RSVKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        +    E A+C L + 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDEKGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         + D+L      AVR LD ++D   + +  AKKS+   R++G+G++ +  
Sbjct: 468 NL-----GTLENLDELEGLADLAVRALDALLDYQDYPVIAAKKSSLARRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + QG+ PID+
Sbjct: 523 YLAKNGVRYSDSSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYSQGILPIDT 582

Query: 726 IGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    +  ++  ++ P    W+ L+K ++  G+RNS   A+ P+ T + I   +  
Sbjct: 583 Y--------KKDIDNLTKEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I+P   ++ VK++  G    VV  +         LWD                   +P++
Sbjct: 635 IEPPRGHVSVKASKDGILKQVVPEYETLGENYELLWD-------------------LPNN 675

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAW 893
              +H                  QK++DQA S N   D       +   K+L      A+
Sbjct: 676 DGYLHLVGI-------------MQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAY 722

Query: 894 LMGLKTTYYLRSR-SATSVEKSTLKGVDG 921
             GLKT YY  +R  A  V++    G  G
Sbjct: 723 KYGLKTLYYQNTRDGAEDVQEDIDDGCSG 751


>gi|149911237|ref|ZP_01899860.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
 gi|149805691|gb|EDM65690.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
          Length = 757

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 209/780 (26%), Positives = 333/780 (42%), Gaps = 89/780 (11%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  +++ A  GL +VS  +V  +++   YDG+   D+   +I ++  LI +E P+Y  
Sbjct: 20  EKIHRVIKWAAKGLDNVSVSLVELKSHIQFYDGIRTEDIHETMIKAAADLISEEAPDYQY 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           ++AR  +  LR++     ++ P    H +       Y          A LL +   + + 
Sbjct: 80  LSARLAVFHLRKKAYGK-FEPPALYDHVKFNVDALRY---------DAHLLADYTAE-EF 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL--ALKETE 334
             +   + + RD  F Y  ++ L  +Y L   I G   E PQ  ++ VA  L     ++ 
Sbjct: 129 AEMDEFVDHWRDMNFSYGAIKQLEGKYLLQNRITGEIFESPQFLYILVAASLFATYDKSV 188

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           +      FY   S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RMDYVRRFYEATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINAVSNSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G IPF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSSIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+  N   TLFSP +V  L+D
Sbjct: 307 PLWHLEVESLLVLKNNRGVEENRVRHLDYGVQLNRLMYQRLIDNKDITLFSPSDVDGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPC 567
            + +   EFE  Y  YE+          RK  I A  L+  ++     TG  +I   D C
Sbjct: 367 AFFQDQDEFERLYNLYEQDPS------IRKQTIKASELFALLMQERASTGRIYIQNVDHC 420

Query: 568 NIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDY 618
           N  SP    V  +  SNLC EI L             E A+C L + NL A       D 
Sbjct: 421 NTHSPFDPAVAPIRQSNLCLEIALPTKPMQHPGDEDGEIALCTLSAFNLGA-----IKDL 475

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L +    AVR LD+++D   + +  A+KS    R++G+G++ +   L    + Y+   
Sbjct: 476 SELENLSDLAVRALDSLLDYQDYPMPAAEKSTMARRSLGIGVINYAYYLAKNGVKYSDGS 535

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA 737
           A  +   + E I F+ + AS+ L++ERG   +F  + + QG+ PID+    L E+ DE  
Sbjct: 536 ANNLTHRTFEAIQFYLLKASMNLSKERGPCLAFHETTYAQGILPIDTYKSSLDEICDE-- 593

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                 L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + +K++  G
Sbjct: 594 ---ALHLDWETLRSEIKEHGLRNSTLTALMPSETSSQISNATNGIEPPRGLISIKASKDG 650

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                       LKQ       ++ D +    S   +  IP +   +             
Sbjct: 651 -----------ILKQ-------VVPDYENLRDSYELLWNIPSNTGYLQLVGL-------- 684

Query: 858 ESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLM-----GLKTTYYLRSRSATS 910
                 QK++DQA S N   D     G+K+        LM     GLKT YY  +R   S
Sbjct: 685 -----MQKFVDQAISANTNYDPQRFPGQKVPMTTLLTDLMLAYKYGLKTLYYHNTRDGAS 739


>gi|257215692|emb|CAX82998.1| ribonucleotide reductase M1 [Schistosoma japonicum]
          Length = 384

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 200/380 (52%), Gaps = 33/380 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           K+ ++  DG   + + +++   +   C GL +  +    V       +Y G++  +L+  
Sbjct: 16  KIYVVKRDGRSEAIHCEKITKRIRALCYGLNESYIDVDAVTKRVVSGLYPGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV---------YKKPQKATHHEMQCLY 252
              +  ++I K   YA + AR  +  L +E  +           Y  P+   H     L 
Sbjct: 76  AAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVEDLYGYINPRTKKH---SPLV 132

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E    ++ E  +               L N + Y+RD+ + Y G + L   Y L ING 
Sbjct: 133 SEDLRNFVRENAER--------------LDNAIDYQRDYTYNYFGFKTLERSYLLKINGK 178

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRV++G+   + E    A+E YNL+S   F  ++PTLFNSGT  PQLSSCF
Sbjct: 179 VHERPQHMLMRVSVGIHTSDIES---AIETYNLMSEKWFTHASPTLFNSGTPKPQLSSCF 235

Query: 373 LTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+ DD + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+V 
Sbjct: 236 LITMKDDSIEGIYDTLKECAIISKNAGGIGVNVHNIRSLGTYIAGTNGESNGLVPMLRVF 295

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N TA  V+QGG KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDLFM
Sbjct: 296 NSTARYVDQGGNKRPGAFAIYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFM 355

Query: 491 KRVTQNAGWTLFSPDEVSDL 510
           +RV  N  WTL  P E   +
Sbjct: 356 RRVESNDKWTLMDPHECPSI 375


>gi|301058132|ref|ZP_07199184.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
 gi|300447764|gb|EFK11477.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
          Length = 830

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 172/591 (29%), Positives = 267/591 (45%), Gaps = 80/591 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET----EKEKRAVE--FYNLLSSFH 350
           +++L  RY      G  IE P+  F RVA  +A  E     E   + VE  FY L++ F 
Sbjct: 104 VRVLERRYLRQDKEGRAIETPEEMFARVAHHIAQAEKRYGGEDRIKDVEAVFYRLMTEFK 163

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QL++CF+  V D + GIF +L+  A++ K  GG G  ++ +R  
Sbjct: 164 FLPNSPTLMNAGRELGQLAACFVLPVEDSMDGIFDSLKNAALIHKSGGGTGFSFSRLRPK 223

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            + +  T G + G + F+K+ N     V QGG R+GA  A L   H D+ EF+D +KN  
Sbjct: 224 KSRVGTTGGIASGPVSFMKIFNTATEQVKQGGTRRGANMAILRVDHPDILEFIDCKKNN- 282

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                 ++ N +  + D FM+ V  +  + L  P        L  KE             
Sbjct: 283 ---EELNNFNISVGVTDAFMESVKADTNYDLIDPRNGRKTGQLNAKE------------- 326

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                         ++  ++   +E G P I F D  N  +P   +G + S+N C E  L
Sbjct: 327 --------------VYDALIQRAWENGDPGIVFLDKVNQDNPTPGLGEIESTNPCGEQPL 372

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    CNLGSINL     +       DY  L   +R +V  LDN ID++ + + + 
Sbjct: 373 LP----MEACNLGSINLAKFVVDTDEGPAVDYAGLKEVVRESVHFLDNTIDMSRYPLPEI 428

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +    +R IGLG+MGF   L+ L IPY S +A+E A+  M F+   +  AS +LA+ERG
Sbjct: 429 GEMVRGNRKIGLGVMGFADLLYQLRIPYDSEKALETAEAVMGFVQEASHQASRQLAEERG 488

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            + +F     D+ VF                             KR K    RN+    I
Sbjct: 489 VFGNF-----DKSVF-----------------------------KRRKDCSYRNATTTTI 514

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT T++ I G S  I+P +   + ++ M  D  V  +    E  ++  +  + + D+  
Sbjct: 515 APTGTLSIIAGCSSGIEPLFALSFARNVMDNDRLVETNPYFEETAKKKGYFSSELMDIVA 574

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             G+I NI  IP + + +  TA +I P W +   +  Q+  D A S  + L
Sbjct: 575 QKGTIHNINEIPAEDRAVFVTAHDIVPEWHLRMQAAFQRHTDNAVSKTVNL 625


>gi|260582635|ref|ZP_05850424.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
 gi|260094307|gb|EEW78206.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
          Length = 756

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 204/792 (25%), Positives = 337/792 (42%), Gaps = 87/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSA 908
           LKT YY  +R  
Sbjct: 726 LKTLYYQNTRDG 737


>gi|148978905|ref|ZP_01815225.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962103|gb|EDK27389.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
          Length = 760

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 214/790 (27%), Positives = 337/790 (42%), Gaps = 81/790 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H        +Y    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVAKLVDMGKYDSHLMED 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             KA        +FD   L + + ++RD  F Y  ++ L  +YF+   +     E  Q  
Sbjct: 123 YTKA--------EFD--ELDSYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFAKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              +LFSP +V  L+D + +  E   E Y +  +   IK    + AV L+  ++     T
Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSIKR-ETVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               A N+   D LA      VR LD ++D   + +  A KS    R +G+G++ +   L
Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+  
Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584

Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                +D +L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 -----KDIDLVCDEPLHYDWDALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + VK++  G    VV  FL  +     LW      ++  +DG              +H
Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKENYELLW------NIGSNDGY-------------LH 680

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898
                             QK++DQA S N   D     SG    KKL      A+  G+K
Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKKLLQDLLTAYKFGVK 727

Query: 899 TTYYLRSRSA 908
           T YY  +R  
Sbjct: 728 TLYYHNTRDG 737


>gi|15642893|ref|NP_227934.1| ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|4980610|gb|AAD35212.1|AE001698_1 ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|2440216|emb|CAA73377.1| ribonucleotide reductase [Thermotoga maritima MSB8]
          Length = 827

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 197/676 (29%), Positives = 317/676 (46%), Gaps = 109/676 (16%)

Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345
           IL DRYF+  ++G+ +E           +       +  + K+ EK  R  E    F+ +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G   +H                           LS+CF+  V D
Sbjct: 82  LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K            NT   + + F      + G
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  ++  LY ++ E+     E    R  I+  +K+    L+RK+ T  +++G 
Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617
           P + F    N   P      ++S+N C EI L+    +   CNLGSI++ A F NN F D
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S 
Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733
           EA + A   M FI+ HA   S EL +E+G +   + S +   D  V F +       E+R
Sbjct: 411 EARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + M +  R               RN   + IAPT +I+NI   S  ++P++   Y + 
Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               D T      VN++ +  L  E +  I       GS+ +I  +P+ +KK+   A +I
Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575

Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLDE-PSGKKLDFIYRQAWLMG 896
           DPM   L++ A +R       K I+  QS      LN+YL+   +  +   +YR   L  
Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQT 635

Query: 897 LKTTYYLRSRSATSVE 912
              T  L++  A  V+
Sbjct: 636 QVLTKALKTPEAPKVQ 651


>gi|28898708|ref|NP_798313.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839544|ref|ZP_01992211.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363693|ref|ZP_05776477.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879740|ref|ZP_05892095.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898786|ref|ZP_05907227.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901599|ref|ZP_05909994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806926|dbj|BAC60197.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746925|gb|EDM57913.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086602|gb|EFO36297.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093358|gb|EFO43053.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108672|gb|EFO46212.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113387|gb|EFO50927.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|328474727|gb|EGF45532.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus 10329]
          Length = 760

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 211/795 (26%), Positives = 340/795 (42%), Gaps = 91/795 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFDH----------VSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L + + ++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYSKAELDELDSYIDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ V+  L      KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE      +      + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSVKK----ETVKAIEMFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGA--IKSLDDFEELSDLV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLICDEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   ELK     +  ++ ++  +DG            
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPEF--TELKN----NYELLWNIGSNDGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PS         KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSA 908
             G+KT YY  +R  
Sbjct: 723 KFGVKTLYYHNTRDG 737


>gi|319776093|ref|YP_004138581.1| ribonucleoside-diphosphate reductase subunit alpha [Haemophilus
           influenzae F3047]
 gi|317450684|emb|CBY86904.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3047]
          Length = 756

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDAMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASGIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|22536603|ref|NP_687454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|76798640|ref|ZP_00780866.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77407709|ref|ZP_00784464.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|22533440|gb|AAM99326.1|AE014211_3 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|76586005|gb|EAO62537.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77173708|gb|EAO76822.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 721

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 186/657 (28%), Positives = 309/657 (47%), Gaps = 86/657 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y + FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + 
Sbjct: 84  YAKKFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDD 142

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 143 MLANRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD
Sbjct: 203 TNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLD 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YGK   +I+  
Sbjct: 263 TKRENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISIT 319

Query: 523 ENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           E YE      +I K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  
Sbjct: 320 EEYETLLANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVM 377

Query: 582 SNLCTEIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N++S+               CNLGSIN +A   +   D++KL   I  ++
Sbjct: 378 SNLCSEIAQVNTASQFSEDLTFTKVGHDVCCNLGSIN-IARAMDQAADFEKL---IANSI 433

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V    +  +    KK N  + A+GLG M     L   HI Y S EA++  D    
Sbjct: 434 RALDRVSRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFY 493

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDEL 736
            ++++A  AS  LA+E+G +  F  S +  G +                  LLA    E 
Sbjct: 494 AMAYYAFKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLA----EY 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S+  W +L + +K IG+ N++ +A+APT +I+ +   + S+ P            
Sbjct: 550 GLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQP------------ 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFE 850
                    +V+ ++ R              +G++G +  +P      D+       A+E
Sbjct: 598 ---------VVSPVEVR-------------KEGALGRV-YVPAYKIDADNYVYYKKGAYE 634

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +    +I  A+  QK IDQA SL L++ D+ + + L+  Y QA+     + YY+R R
Sbjct: 635 VGSEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR 691


>gi|300723736|ref|YP_003713043.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630260|emb|CBJ90911.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 763

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 220/811 (27%), Positives = 348/811 (42%), Gaps = 103/811 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++               E   LY  +  R ++ G
Sbjct: 65  AAADLISGDAPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-NHVVRMVDLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSKEEFEQMDSFINHLRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTM 552
              +LFSP +V  L+D +     EFE  Y  YE  ++ R E     +I AV L+  M+  
Sbjct: 351 EDISLFSPSDVPGLYDAFFADQDEFERLYTQYENDSNIRKE-----RIRAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D  +L      AVR LD+++D   + I  A++ +   R +G+G++ F
Sbjct: 466 AFNLGA-----IEDLTELEELAELAVRALDSLLDYQDYPIIAAQQGSMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDSSANNLTHKTFEAIQYYLLKASNELAKERGACPWFGETTYSQGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D L+ +    + W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKKTLDTLS-SEPLHMDWEALRRDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLK 842
           P    + VK++  G    V                                  +PD DL 
Sbjct: 637 PPRGYISVKASKDGILRQV----------------------------------VPDYDLL 662

Query: 843 KIHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ 891
           K    A+E+  +W + S           QK+IDQ+ S N   D    P+GK  ++ + + 
Sbjct: 663 K---GAYEL--LWQMPSNNGYLQLVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKD 717

Query: 892 ---AWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              A+  G+KT YY  +R      +  L+ V
Sbjct: 718 LLLAYKYGVKTLYYHNTRDGAEDVQGDLEEV 748


>gi|218778781|ref|YP_002430099.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760165|gb|ACL02631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfatibacillum alkenivorans AK-01]
          Length = 724

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 175/626 (27%), Positives = 288/626 (46%), Gaps = 79/626 (12%)

Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
            +F    L +L  RY     NG  IE P+    RVA  +A  + + ++ A       +FY
Sbjct: 3   LSFSSSALVVLKKRYLKKDKNGRVIESPEKMLQRVADSVARADKDYDETADIQALAAQFY 62

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L+S   F+ ++PTL N+G R  QLS+CF+  V D +  IF +L+  AM+ K  GG G  
Sbjct: 63  DLMSKGWFIPNSPTLMNAGRRLGQLSACFVLPVEDSIESIFDSLKHTAMIHKSGGGTGFS 122

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ VR     +  T G S G I F+ V +     V QGG R+GA  A L   H D+EEF+
Sbjct: 123 FSRVRPANDKVLSTAGVSSGPISFMAVFDAATETVKQGGTRRGANMAILRVDHPDIEEFI 182

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    DD     + N +  +   FM+ + +   + L +P                   
Sbjct: 183 ACK----DDPAFLQNFNISVGLTQEFMEALEKGGDYELVNPR------------------ 220

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R  +K    ++A  ++  ++   +++G P I F D  N  +P   +G + ++N
Sbjct: 221 ------TRNSVKT---LNAPKIFDMIVNSAWQSGEPGIIFLDRINEANPTPALGEIEATN 271

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L         CNLGSINL       + D D+L + I TAV  LDNV++IN + +
Sbjct: 272 PCGEQPLLPYES----CNLGSINLGKMAEGGKLDKDRLKAVIHTAVHFLDNVVEINKYPL 327

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ K+     R +GLG+MGF   L  L +PY S EAV +A E M  IS  +  AS +L +
Sbjct: 328 KEIKEQTLATRKVGLGVMGFADLLIKLGVPYDSEEAVAMAHEVMSLISEESKKASAQLGE 387

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG + ++ GS++D                                  + +T  MRN+  
Sbjct: 388 ARGNFPAYAGSMYD----------------------------------KPETPHMRNATT 413

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMIS 822
             +APT TI+ I   S  I+P +   Y +  + G+       L  E+ K++  + E +  
Sbjct: 414 TTLAPTGTISIIANASSGIEPIFAVAYTRRVLDGERLHEFHPLFEEMAKEQGFFTEDLAK 473

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           ++   +GSI  +  IP +++++  T+ +I P W +   +  QK+ D A S  +     + 
Sbjct: 474 NIAL-EGSIQEMTNIPKEVRRLFKTSHDISPEWHVRIQAAFQKYTDNAVSKTVNFPHSAT 532

Query: 883 KK-LDFIYRQAWLMGLKTTYYLRSRS 907
           ++ ++ +++ A   G K     R  S
Sbjct: 533 REDVEKVFKLARETGCKGVTIYRDGS 558


>gi|163803512|ref|ZP_02197382.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
 gi|159172688|gb|EDP57539.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
          Length = 760

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 212/795 (26%), Positives = 342/795 (43%), Gaps = 91/795 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y + +  T H+       +  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKA----YGQYEPPTLHD-------HVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + + E     +L  L   L+++RD  F Y  ++ L  +YF+   ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLEHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ V+  L      KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVSACL-FANYPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D +    +EFE  Y  YE      +      + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFENQEEFERLYVKYENDPSVKK----ETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +  D+++L+  +   VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGA--IKSLDDFEELSELV---VRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVMLAKEQGKCPLFDETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L  +      W  L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDVDLICDEKLHYDWGTLRQEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  F   ELK     D  ++ ++  ++G            
Sbjct: 636 EPPRGFVSVKASKDGILKQVVPDFA--ELKN----DYELLWNIGSNEGY----------- 678

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFIYRQAW 893
             +H                  QK++DQA S N   D PSG        KKL      A+
Sbjct: 679 --LHLVGI-------------MQKFVDQAISANTNYD-PSGYDSGKVPMKKLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSA 908
             G+KT YY  +R  
Sbjct: 723 KFGVKTLYYHNTRDG 737


>gi|317154786|ref|YP_004122834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945037|gb|ADU64088.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 748

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 176/612 (28%), Positives = 297/612 (48%), Gaps = 87/612 (14%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           E  +  F RVA  +A +E + +         A +FY+L++S+ F+ ++PTL N+GT   Q
Sbjct: 38  ETVKELFWRVASAIAAEEAKYDGSSCKPATLARDFYDLMTSYSFLPNSPTLMNAGTGLGQ 97

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L++CF+  V D +  IF A++  AM+ K  GG G  ++ +R   + +  T G + G + F
Sbjct: 98  LAACFVLPVADSIEDIFDAVKHAAMIHKSGGGTGFSFSRLRAKDSVVGSTGGVASGPLSF 157

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           L++ N     + QGG R+GA    L   H D+ EF+  ++  G+     ++ N +  + +
Sbjct: 158 LRIFNCATEQIKQGGTRRGANMGILRVDHPDIMEFIKAKERDGE----LNNFNLSIGLTE 213

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+ V +N  + L +P+                             +V  K++A  ++ 
Sbjct: 214 AFMRAVEKNEEFDLMAPNSG---------------------------QVVEKLNAREVFN 246

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            ++   +E+G P I F D  N  +P   +G + S+N C E  L         CNLGSINL
Sbjct: 247 LLVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPCGEQPLLPYE----ACNLGSINL 302

Query: 608 LAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
              +A      +++ ++D+L   I  +VR LDNVID + + + +  +    +R IGLG+M
Sbjct: 303 GKCYAKGKNGHDSEVNWDELRRIIHLSVRFLDNVIDASVYPLSEITEMVGKNRKIGLGVM 362

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G+   L  L I Y S  AV++A+  M+F+   A SAS +LA ERG + ++      + VF
Sbjct: 363 GWADLLFQLDIAYNSQTAVDLAERVMKFMRDEARSASKQLAAERGPFPAYA-----ESVF 417

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
              ++G                 P+            RN+    IAPT T++ I G S  
Sbjct: 418 GKANLG-----------------PY------------RNATTTTIAPTGTLSIIGGCSSG 448

Query: 782 IDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           ++P +   +V++ M  D  V  N F    LKQ D +   ++ ++    G+I  +E +P D
Sbjct: 449 VEPLFALSFVRNVMDNDKLVESNPFFETALKQADAYSPKLMEEIA-KVGTIRKMEHLPHD 507

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK 898
           L++++ TA +I+P+W ++  +  QK+ D A S  + L   S  + D   IY +A+  G K
Sbjct: 508 LRRVYVTAMDIEPIWHLKMQAAFQKYTDNAVSKTVNLPG-SATREDIWDIYWKAYEYGCK 566

Query: 899 TTYYLRSRSATS 910
                R  S TS
Sbjct: 567 GVTVYRDGSKTS 578


>gi|163748932|ref|ZP_02156183.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
 gi|161331308|gb|EDQ02196.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
          Length = 762

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 205/804 (25%), Positives = 353/804 (43%), Gaps = 87/804 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MKVTKRSGKRENIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + ++ G
Sbjct: 65  AAADLISLEAPDYQFLSARLAIFHLRKKAFG----------QFEPPALY-DHVVKLVKAG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + + E     +L  L   + + RD +F Y  ++ L  +Y +   +     E  Q  +
Sbjct: 114 KYDKHILEDYSREELDILDTYVDHWRDMSFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ + +    FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G +PF K       +
Sbjct: 232 DSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +     EFE  Y  YE  A   +     +I A  L+  M+    
Sbjct: 352 MISLFSPSDVPGLYDAFFADQDEFERLYLQYEADASVRKT----QIKATELFSLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  +  SNLC EI L        +    E A+C L ++
Sbjct: 408 STGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSAL 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A       D  +L      AVR LD+++D   + I+ A+KS+   R +G+G++ F  
Sbjct: 468 NLGA-----IKDLSELEPLADLAVRALDSLLDYQDYPIKAARKSSMNRRTLGIGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  I   + E I ++ + AS+ LA+E GA  SF  + + +G+ PID+
Sbjct: 523 YLAKEGVRYSDGSANNITHRTFEAIQYYLLKASMNLAKEHGACPSFHETTYSKGILPIDT 582

Query: 726 IGL-LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               L ++ DE L M+      W+ L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 YKRSLDKICDEPLHMD------WETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G           +LKQ       ++ D + +  S   + ++P++   
Sbjct: 637 PPRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQHSYELLWQMPNNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLMG 896
           +                   QK++DQA S N   D    E +   +  + +    A+ +G
Sbjct: 679 LQLVGL-------------MQKFVDQAISANTNYDPGRFEGNKVPMQVLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920
           LKT YY  +R   S +  ++  V+
Sbjct: 726 LKTLYYHNTRDGASDQMDSIISVE 749


>gi|148653375|ref|YP_001280468.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           sp. PRwf-1]
 gi|148572459|gb|ABQ94518.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter sp. PRwf-1]
          Length = 758

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 198/792 (25%), Positives = 345/792 (43%), Gaps = 83/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+   +I 
Sbjct: 7   IKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    ++ P    H            +  E G
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYNQFEPPHLFDH----------VTKLTEAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + + +     +   L + + + RD    Y   + +  +Y +   +  +  E PQ  +
Sbjct: 116 KYDQHILQDYSREEFDELNDYIDHWRDMNLAYAAAEQMAGKYLVQDRVTKTVYESPQFLY 175

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + V M L  +  ++E+      FY+  S+F     TP +  SG R P  Q SSC L    
Sbjct: 176 VLVGMCLFASYDKSERMHYVKRFYDAASTFKISLPTPIM--SGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRPLYTRLIKGE 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              LFSP +V  L++ +     +FE  Y  YE+  +  +    R + A  L+  ++    
Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEALYTKYEKDDNIRK----RHVPAADLFSLLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L ++
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     ++  D ++ A  I   VR LD ++D   + ++ A+  +   R +G+G++ +  
Sbjct: 470 NLGE--VDSLEDIEEPAELI---VRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAY 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L      Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PID+
Sbjct: 525 YLAKNGTRYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDT 584

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +   +   N   RL W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 585 Y----KADLDKVCNEPLRLDWEALRQEIKTHGLRNSTLSALMPSETSSQIANATNGIEPP 640

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + VK++  G            LKQ       ++ D+    G+   + ++P++   + 
Sbjct: 641 RGLVSVKASKDG-----------ILKQ-------VVPDILNLKGNYELLWQMPNNDGYLK 682

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLK 898
             A               QK+IDQ+ S N   D    E +   +  + +    A+ +G+K
Sbjct: 683 LVAV-------------MQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVK 729

Query: 899 TTYYLRSRSATS 910
           T YY  +R   +
Sbjct: 730 TLYYHNTRDGAN 741


>gi|27904670|ref|NP_777796.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605262|sp|Q89AS4|RIR1_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|27904067|gb|AAO26901.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 761

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 211/792 (26%), Positives = 351/792 (44%), Gaps = 95/792 (11%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           +G +   N  ++  ++  A  GL+++S   V  ++    Y+ +  + +   +I ++  LI
Sbjct: 11  NGKIELINLDKIHRVLNWAAKGLENISISQVALKSRIQFYNNIKTTIIHETIIKAAADLI 70

Query: 211 -EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E  P+Y  + AR  +  LR++     +  P    H +      +Y    + +  K    
Sbjct: 71  SENSPDYQYMAARLTIFHLRKKAFGQ-FNPPNLYDHVKNMIKLEKYDQHLLNDYPKQ--- 126

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
                  D + + + +K+ RD  F Y  ++ L  +Y +    ++     A F+ + +   
Sbjct: 127 -------DFLIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESAQFLYILISAC 179

Query: 330 L-----KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382
           L      ET + K    FY+ +S+F     TP +  +G R P  Q SSC L    D+L  
Sbjct: 180 LFSKYPNET-RMKYIKNFYDAISTFKISLPTPIM--AGLRTPTRQFSSCVLIESEDNLNS 236

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I               G+G +   +R LG+ I   +    G IPF K       + +QGG
Sbjct: 237 INATTSAIVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAVKSCSQGG 296

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R GA   +   WH ++E  L L+ N G +  R   M+ +  +  L  +R+      TLF
Sbjct: 297 VRGGAATIFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLILGEHITLF 356

Query: 503 SPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           SP +V +L+D +    ++FE  Y  YE   D+   K  +K+ A  L+  M+     TG  
Sbjct: 357 SPSDVPNLYDSFFNNQEKFERLYIKYEN--DKTIRK--KKVKASYLFSLMMQERTSTGRI 412

Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAH 610
           +I   D CN  S     +  +  SNLC EITL        +  + E ++C L +INL + 
Sbjct: 413 YIQNVDHCNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLSAINLGS- 471

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             NN  D  KL++ I   VR LD+V+D   + I  AKKS  + R +G+G++ F   L   
Sbjct: 472 -LNNLNDLSKLSNLI---VRALDSVLDYQEYPILSAKKSALSRRTLGIGVINFAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E I +H ++AS  LAQE+GA   F  + + +G+ PID+     
Sbjct: 528 GVRYSDGSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPIDT---YK 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DE+  N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 585 KNVDEIC-NEPLHLDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGLIS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRD-----LWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +K++  G    V    V E K+       LW+                   IP++     
Sbjct: 644 IKASKDGMLRQV----VPEYKRLKNNYELLWN-------------------IPNN----- 675

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLK 898
            T +       ++ AS  QK++DQ+ S N   D    P+ K    +L      A+ +GLK
Sbjct: 676 -TGY-------LQLASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLGLK 727

Query: 899 TTYYLRSRSATS 910
           T YY  +R   S
Sbjct: 728 TLYYQNTRDGAS 739


>gi|268591163|ref|ZP_06125384.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291313389|gb|EFE53842.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 763

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 189/675 (28%), Positives = 300/675 (44%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++               E   LY ++    +E G
Sbjct: 65  AAADLITGDTPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-KHVKHLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E   + +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSEAEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N
Sbjct: 291 SCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKN 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551
              TLFSP +V  L+D +     EFE  Y  YE+  +       RK  + AV L+  M+ 
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDEN------IRKSSVKAVELFSLMMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNINDENGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A  +      D+L      AVR LD ++D   + I  AK+ +   R +G+G++ 
Sbjct: 465 SAFNLGAIDS-----LDELEELAILAVRALDALLDYQDYPIIAAKQGSMGRRTLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV P
Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLP 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +  D+L  N      W+ L++ +K  G+RNS   A+ P+ T + I   +  I
Sbjct: 580 IDT---YKKELDKLT-NEPLHYDWEALRQEIKQHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + +K++  G
Sbjct: 636 EPPRGYISIKASKDG 650


>gi|301170417|emb|CBW30023.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae 10810]
          Length = 756

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 207/806 (25%), Positives = 341/806 (42%), Gaps = 88/806 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKLVRIG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 DDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDSLT-QEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ +K++  G    V     N +   + LWD                   IP +   
Sbjct: 638 PRGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMG 896
           +H                  QK++DQA S N   D    E     +  + +    A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSR-SATSVEKSTLKGVDG 921
           LKT YY  +R  A  V++    G  G
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDDGCAG 751


>gi|307353248|ref|YP_003894299.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307156481|gb|ADN35861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 722

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 175/606 (28%), Positives = 277/606 (45%), Gaps = 99/606 (16%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  LA  E ++E     FY  ++S  F+ ++PTL N+GT   QLS+CF   VPD + G
Sbjct: 29  RVASALASDEKDREL----FYEAMTSLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSIPG 84

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A+++ A++ K  GG G +++ +R  G+ +  T+G + G + F+K  N     + QGG
Sbjct: 85  IFDAMKQGAVIHKTGGGTGYNFSHIRAEGSPVRSTDGVASGPVSFMKAFNAATDVIKQGG 144

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L  WH D+  F+  +K  G       + N +  + D FM  V         
Sbjct: 145 RRRGANMGILNVWHPDILSFITSKKEEGS----ISNFNISVMVNDEFMTLVRDR------ 194

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             DE+   H + G                       K++   +W  ++  +++ G P + 
Sbjct: 195 KFDEIWIKHPVTGV----------------------KVTVGEIWNGIVDGIWKNGEPGVL 232

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +P   +G +  +N C E  L         C LGSINL A     +FD + L 
Sbjct: 233 FYDEINRHNPTPGLGDIDITNPCGEQPLLPFES----CVLGSINLAACINEGKFDEELLD 288

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+R AVR L+NVID N + I + +++    R IGLG+MG   AL +L IPY SP   + 
Sbjct: 289 DTVRMAVRFLNNVIDANVYPIPEIEEATKKTRKIGLGVMGVHDALLMLKIPYDSPGGRKW 348

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             E M  I+  A+  S  LA++ G +  ++ S W                          
Sbjct: 349 CGEIMHRITETAVEESQLLAEKLGTFPEWEKSTW-------------------------- 382

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801
                  K+R     +RN+    +APT TI+ + G S  I+P +   Y + N  G  F +
Sbjct: 383 -------KER----KVRNAAMTTVAPTGTISLLAGCSSGIEPVFSFAYTRMNTVGKTFFI 431

Query: 802 VNSFLV--------------NELKQRDLWDEAMISDLKYHD-GSIGNIERIPDDLKKIHA 846
           V+                  +ELK+R   +E +I+ +  HD GSI ++E +P D + +  
Sbjct: 432 VSPVFKEALHSTLSEKGHSGDELKKR---EEEVIAHV--HDTGSIQDLEWLPADFRSLFK 486

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRS 905
           TA +I     IE  +  QK++  + S  + +   + +K  +     AW +GLK     R+
Sbjct: 487 TALDISYRDHIEMQAVFQKYVHASISKTINMPNSAERKDCEEALLAAWTLGLKGITIYRT 546

Query: 906 RSATSV 911
            S  SV
Sbjct: 547 GSRDSV 552


>gi|218709926|ref|YP_002417547.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           splendidus LGP32]
 gi|218322945|emb|CAV19122.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           splendidus LGP32]
          Length = 760

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 214/790 (27%), Positives = 336/790 (42%), Gaps = 81/790 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H        +Y    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVTKLVDMGKYDSHLMED 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             KA        +FD   L   + ++RD  F Y  ++ L  +YF+   +     E  Q  
Sbjct: 123 YTKA--------EFD--ELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              +LFSP +V  L+D + +  E   E Y +  +   +K    + AV L+  ++     T
Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSVKR-ETVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               A N+   D LA      VR LD ++D   + +  A KS    R +G+G++ +   L
Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+  
Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584

Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                +D +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 -----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + VK++  G    VV  FL  +     LW+             IGN +        +H
Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKNNYELLWN-------------IGNNDGY------LH 680

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898
                             QK++DQA S N   D     SG    K+L      A+  G+K
Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVK 727

Query: 899 TTYYLRSRSA 908
           T YY  +R  
Sbjct: 728 TLYYHNTRDG 737


>gi|86148465|ref|ZP_01066755.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85833762|gb|EAQ51930.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 760

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 214/790 (27%), Positives = 336/790 (42%), Gaps = 81/790 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H        +Y    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGE-YEPPALYDHVAKLVDMGKYDSHLMED 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             KA        +FD   L   + ++RD  F Y  ++ L  +YF+   +     E  Q  
Sbjct: 123 YTKA--------EFD--ELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              +LFSP +V  L+D + +  E   E Y +  +   +K    + AV L+  ++     T
Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSVKR-ETVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               A N+   D LA      VR LD ++D   + +  A KS    R +G+G++ +   L
Sbjct: 470 ---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+  
Sbjct: 525 AKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYK 584

Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                +D +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 -----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + VK++  G    VV  FL  +     LW+             IGN +        +H
Sbjct: 640 GYVSVKASKDGILKQVVPDFLNLKNNYELLWN-------------IGNNDGY------LH 680

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SG----KKLDFIYRQAWLMGLK 898
                             QK++DQA S N   D     SG    K+L      A+  G+K
Sbjct: 681 LVGI-------------MQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVK 727

Query: 899 TTYYLRSRSA 908
           T YY  +R  
Sbjct: 728 TLYYHNTRDG 737


>gi|125972577|ref|YP_001036487.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           thermocellum ATCC 27405]
 gi|256005139|ref|ZP_05430108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281416768|ref|ZP_06247788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|125712802|gb|ABN51294.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum ATCC 27405]
 gi|255990886|gb|EEU00999.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281408170|gb|EFB38428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|316941185|gb|ADU75219.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 1313]
          Length = 794

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/599 (28%), Positives = 286/599 (47%), Gaps = 83/599 (13%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVE--FYNLLSSFH 350
           +++L  RY     NG+ +E P+  F RVA  +A  +    +E+E +++E  FY+++ +  
Sbjct: 8   IKVLKKRYLAKDENGNLLEDPEGMFRRVARTVASADKEYVSEEELKSIEQEFYDMMVNLD 67

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  ++ +R  
Sbjct: 68  FLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFSFSRLRPK 127

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +KN  
Sbjct: 128 GASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIVEFITCKKNNA 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D      + N +  I + FM  V  N  + L  P                          
Sbjct: 188 D----ITNFNISVGITEEFMNAVENNEYYNLVEPHTG----------------------- 220

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               K+  K +A  ++  ++ M +  G P I F D  N  +    +G + S+N C E  L
Sbjct: 221 ----KIVGKQNAREIFDLIVDMAWNNGEPGIIFLDRLNKDNVTPELGEIESTNPCGEQPL 276

Query: 591 NSSSEETAVCNLGSINL--LAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    CNLGSINL  +  + +   + D+ KL +T+  AV  LDNVID+N + + + 
Sbjct: 277 LPYE----ACNLGSINLSNMLKYVDGKPEVDFAKLRTTVWKAVHFLDNVIDVNKYPLPEI 332

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            K     R IGLG+MG+   L  L+IPY S  ++++A++ M FI   +  AS+ELA+++G
Sbjct: 333 DKMTRGTRKIGLGVMGWADMLCKLNIPYNSQSSIDLAEKIMHFIQDESRKASMELAEKKG 392

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  +  S++        ++G                            I +RN+    I
Sbjct: 393 VFPYYDKSIYK-------NLG----------------------------IRVRNATTTTI 417

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLK 825
           APT T++ I GVS  I+P +   Y+++ M  D  V VN       K+   + + ++  + 
Sbjct: 418 APTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELVEVNPVFKQVAKEEGFYSDELMRRIA 477

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              GSI   + IP+ ++ +  TA +I P W +   +  QK+ D A S  + L   + +K
Sbjct: 478 -KKGSIRGFDEIPEWIQDVFVTAHDISPDWHVRMQAAFQKYTDNAVSKTVNLRNEATRK 535


>gi|119472402|ref|ZP_01614520.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
 gi|119444924|gb|EAW26222.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
          Length = 760

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 210/796 (26%), Positives = 342/796 (42%), Gaps = 89/796 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++       +P +   H  + +  +   RY   
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQF--EPPRLFDHVTKMVSDK---RY--- 115

Query: 263 GVKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
              A LL + +  +FD   L   L + RD  F Y  ++ L  +Y +   + G   E  Q 
Sbjct: 116 --DAHLLADYTEQEFD--ELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
            ++ VA  L   +  +E R      FY+ +S F     TP +  +G R P  Q SSC L 
Sbjct: 172 LYILVAASL-FADYPRETRVSYIKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLI 228

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I               G+G +   +R LG+HI        G IPF K     
Sbjct: 229 ECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ 
Sbjct: 289 VKSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLI 348

Query: 495 QNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           ++   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+     
Sbjct: 349 KDDYITLFSPSDVPGLYDAFFEDQDEFDTLYVKYEQD----ESIRKKRIKAIELFSVFAQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  ++   D CN  SP    V  +  SNLC EI L        N    E A+C L
Sbjct: 405 ERASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL           D+L      AVR LDN++D   + +  AK +    R +G+G++ 
Sbjct: 465 SAFNL-----GALESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P
Sbjct: 520 YAYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMP 579

Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D+    L ++ DE        L WD L+K ++  GMRNS   A+ P+ T + I   +  
Sbjct: 580 TDTYKTDLDKICDE-----PLHLDWDALRKSIQEHGMRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   ++ VK++  G   ++   +    + +D ++  ++ D+  +DG            
Sbjct: 635 IEPPRGHISVKASKDG---ILKQVVPEYERLKDNYE--LLWDIPSNDG------------ 677

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWL 894
                          ++     QK++DQ  S N   D    E     +  + +    A+ 
Sbjct: 678 --------------YLQLVGIMQKFVDQTISANTNYDPNKFEGGKVPMKVLLKDLLSAYK 723

Query: 895 MGLKTTYYLRSRSATS 910
           +G+KT YY  +R   S
Sbjct: 724 LGVKTLYYHNTRDGAS 739


>gi|117920414|ref|YP_869606.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           ANA-3]
 gi|117612746|gb|ABK48200.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. ANA-3]
          Length = 762

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 206/791 (26%), Positives = 348/791 (43%), Gaps = 93/791 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++  A  GL++VS   V   T+   +DG+    +   +I S+  LI  E P+Y  +
Sbjct: 21  KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + +E G     + +     +L 
Sbjct: 81  AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            + + + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L      KE 
Sbjct: 130 IMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ +    +LFSP +V  L+D
Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE+ +   +    + + AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L        +  + E A+C L ++NL A    N  + + 
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA     AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    + Y+   A 
Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
            +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   +
Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652

Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             VV  F  +ELK    ++  ++  +  ++G                           ++
Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680

Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909
                QK++DQA S N   D     G+K+       D +   A+ +G+KT YY  +R   
Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738

Query: 910 SVEKSTLKGVD 920
           S +   +  ++
Sbjct: 739 SDQHDDITNIE 749


>gi|261867685|ref|YP_003255607.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413017|gb|ACX82388.1| hypothetical protein D11S_1001 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 756

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 203/793 (25%), Positives = 339/793 (42%), Gaps = 89/793 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P+   H +      +Y    +++ 
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKYDPSLLDDY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            +     + M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 124 TREEW--DEMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++    
Sbjct: 352 DITLFSPSDVPGLYETFFADQDKFEQLYVQYEQDPNIRK----RTVKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+C L + 
Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +  
Sbjct: 468 NL-----GKLENLDELDNLADLAVRTLDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDT 582

Query: 726 IGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                  + ++    T  L   W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 ------YKKDIDSLTTEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V     N  +  + LWD                   IP +  
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSA 908
           GLKT YY  +R  
Sbjct: 725 GLKTLYYQNTRDG 737


>gi|327440527|dbj|BAK16892.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 697

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 195/706 (27%), Positives = 336/706 (47%), Gaps = 103/706 (14%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295
           RY  E V  RL +   ++  + YL ++  YE++F               A+ Y       
Sbjct: 32  RYFLEDVNVRLRYFIDIEEKVRYLVDEGYYEKEFLELYSMDFIKQMYKKAYSYKFRFPSF 91

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +     Y+ Y +     +  +E  +   + +A+ LA  +    ++A+E   +++++    
Sbjct: 92  MSASKFYESYAMKSRDGKEILEKYEDRIVIIALYLAQGDEALAEKAIE--AVMTAYQ--P 147

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +   +L SCF  T+ D +  I   +     L++  GG+G + T +R LG 
Sbjct: 148 ATPTALNSGKKARGELVSCFKLTMDDTMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G   ++ GV+P  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD
Sbjct: 208 PIKGILNRASGVMPVAKLLENSFSYSNQLGQRNGSGVVYLNVFHGDIEAFISSKKPNADD 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQAD 530
           + R   ++T   +PD+F + + ++    LFS     D+   YGK   EI+  E Y    D
Sbjct: 268 KIRLATLSTGIILPDIFFELMRRDKDIVLFSS---YDIFKEYGKRMSEISITEMYYEFLD 324

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              I+  ++++A  L+ ++    FE+G+P+  F D  N   P + +G V  SNLCTEI  
Sbjct: 325 NPNIRKLKRLNARKLYTEIKKAQFESGYPFEIFDDNVNNTHPLKEIGRVKMSNLCTEIL- 383

Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               ++T+V               CNLGSI++  H A    D+ +L   + TA+R+L NV
Sbjct: 384 --QYQQTSVVTDQNEPNEYGLDVSCNLGSIDI--HEATKVQDFGQL---VDTAMRLLTNV 436

Query: 636 ID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                 +N  ++ KA K  H+   +GLG+M     L    I Y S E++E  D  ME ++
Sbjct: 437 STMTDIVNVPSVSKANKVMHS---VGLGVMNLHGHLVQSGIRYGSKESIEFIDAFMESLN 493

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNR-TSRL 744
           +H++ AS+E+A+++   +  F+ S +  GV+    +      L  EV   L      +R 
Sbjct: 494 YHSLKASMEIAKQKNETFYRFEESDYASGVYFESYVNKEEKELTPEVIKALGGTPIITRN 553

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W++LK  V   G+ +S  +AIAPT +I+ I   + SI P                    
Sbjct: 554 MWEQLKSDVLKHGLFHSYRLAIAPTGSISYIRSCTASISP-------------------- 593

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   ++ RD  D   I  + +          + +D ++++  A+E++P  LI+  +  Q
Sbjct: 594 -VTERVEVRDYADSRTIYPMPF----------LTNDNQELYTEAYEVNPYELIDLYAAAQ 642

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           K +DQ  S+ LY+ D+ + ++L   Y  AW  G+KT YY+R R  T
Sbjct: 643 KHVDQGISMTLYVTDQWNTEQLAKAYIYAWTKGIKTVYYVRQRLLT 688


>gi|150020504|ref|YP_001305858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
 gi|149793025|gb|ABR30473.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
          Length = 833

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 188/657 (28%), Positives = 310/657 (47%), Gaps = 94/657 (14%)

Query: 299 QILYDRYFL-HINGSRIEMP-QAFFMRVAMGLALKET------------EKEKRAVEFYN 344
           +IL +RYF  ++NG  +E        RVA  +A  E             E ++    F+ 
Sbjct: 20  KILTERYFFKNLNGKFLETKWDDVCRRVARVVATAELVNNPKLSNKKLDEIKELEETFFK 79

Query: 345 LLSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVP 377
           +L +  F+ ++PTLFN+G   RH                           LS+CF+  + 
Sbjct: 80  MLKARIFIPNSPTLFNAGMGVRHELLWKPIEEMTLEDYEEIYKTRNHLHMLSACFVVPIE 139

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D +  IF A++E A++ K  GG+G++++ +R  G+ + GT+G++ G + F+ V N     
Sbjct: 140 DSIDEIFEAVKEYALITKAGGGIGSNFSNLRPKGSFVAGTHGQASGPVSFMHVYNSAIAV 199

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V QG KR+GA+   L   H D+EEF+  ++N  D  +     N +  IP  F K      
Sbjct: 200 VEQGYKRRGALMGILNINHPDIEEFITAKENN-DGEKILKYFNISVGIP--FDK------ 250

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFET 556
                             KEF   YEN E       + K  RKI A  + +++    ++T
Sbjct: 251 ------------------KEFLKIYENDEEITLTHPKFKETRKIKARHILKRIAKNAWKT 292

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F    N   P      + S+N C EI L         CNLGSI++     NNQ 
Sbjct: 293 GDPGLAFLHEMNKYYPLYPEKEIISTNPCGEIGLAPYE----ACNLGSIDVSKFVENNQI 348

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+  L +T+R  VR LDNVID+N   +EK  K+    R +GLG+MGF   L+ L++PY S
Sbjct: 349 DWKALETTVRLTVRFLDNVIDVNVFPLEKITKAVKESRRLGLGIMGFADLLYKLNVPYNS 408

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDE 735
            +  EIA   M FI+ H    S +L +E+G +  F K   + +  F   ++G +++  DE
Sbjct: 409 EKGREIAANLMGFIALHGHDESNKLGREKGNFPLFEKSRFFKEENFVPFAMG-MSKYDDE 467

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           +           E+ K  K  G RN   + IAPT +I+NI   S  ++P++   YV+   
Sbjct: 468 IK----------EVMKEAKK-GKRNVAVLTIAPTGSISNIADTSSGLEPNFLLAYVRYMN 516

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLK---YHDGSIGNIERIPDDLKKIHATAFEID 852
             D      F +N++ ++ L D   +  +K      GS+  ++ +P+++KK+  TA +I 
Sbjct: 517 KHDGGKEALFYINKVLEQKL-DPITLEKIKEKLIEKGSLQELD-VPEEIKKVFVTAMDIS 574

Query: 853 PMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           PM  +      Q+++D   ++++N+  +      L+ IY +A+ + ++     R  S
Sbjct: 575 PMDHLLMQDAFQRYVDNNISKTINMPSNATEEDVLN-IYLEAFKLNVRGLTIYRDGS 630


>gi|260579707|ref|ZP_05847566.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602137|gb|EEW15455.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 720

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 191/663 (28%), Positives = 307/663 (46%), Gaps = 78/663 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+GLA  +TE     V+  
Sbjct: 99  YAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGDTELASNLVD-- 156

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    F  +TPT  N G +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 157 -EIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 215

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + VR  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 216 LLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRF 275

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F    
Sbjct: 276 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADVS 332

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E+YE   +   I+   KI+A A ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 333 VTEHYEEMVEDPRIRK-SKINARAFFQTLAEIQFESGYPYIMFEDTVNKANPIE--GRIT 389

Query: 581 SSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S+  E               CNLGS+N+         D +  + TI TA
Sbjct: 390 HSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA-----KAMDSEDFSKTIETA 444

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S EA++  +   
Sbjct: 445 IRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALDFTNAYF 504

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741
             + + A+ AS ++AQERG  + +F+ S +  G F     P +       VR ++  N +
Sbjct: 505 ATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERVR-QIFGNSS 563

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
            ++P    W +LK+ V+  G+ N N  AI PT +I+ I   + SI P    + + K    
Sbjct: 564 IQVPTAQDWQQLKEAVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIRKEGKI 623

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       ++ NE             +L+Y++                   A+EI    +
Sbjct: 624 GRVYYPAPYMTNE-------------NLEYYE------------------DAYEIGYEKI 652

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R  T++  + 
Sbjct: 653 IDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRLRQ-TALTGTE 711

Query: 916 LKG 918
           ++G
Sbjct: 712 VEG 714


>gi|326772790|ref|ZP_08232074.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
 gi|326637422|gb|EGE38324.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
          Length = 718

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 189/650 (29%), Positives = 295/650 (45%), Gaps = 71/650 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F FE +LG    Y  Y L   +G R    + F  RV M  L L + + E+ A++  
Sbjct: 97  YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADGD-EQLALDLV 153

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+  
Sbjct: 154 DEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 214 LLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   +  +  
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGMPFADINVT- 332

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D G IK  +KI+A   ++ +  + FE+G+P++ F+D  N  +P +  G V  S
Sbjct: 333 EKYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVVMS 389

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   S   E               CNLGS+N+         D    A TIRTAVR
Sbjct: 390 NLCSEILQVSEPSELNEDLTYAHVGKDISCNLGSLNIA-----KTMDSPDFARTIRTAVR 444

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +  ++    + NH   AIGLG M     L    I Y S E ++  +     
Sbjct: 445 GLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFAS 504

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-- 741
           + F A++AS E+A ERG ++  F+ S +  G F       D + +   V++  A +    
Sbjct: 505 VLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHV 564

Query: 742 -SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            +R  W EL +++K  G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 565 PTREDWAELAEKIKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRV 624

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ N+                       N+E   D        A+EI P  +I++
Sbjct: 625 YYPAPFMTND-----------------------NLEYYRD--------AYEIGPEKIIDT 653

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A
Sbjct: 654 YAVATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQA 703


>gi|56418246|gb|AAV91060.1| ribonucleoside-diphosphate reductase alpha subunit [Grouper
           iridovirus]
          Length = 572

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 166/587 (28%), Positives = 268/587 (45%), Gaps = 97/587 (16%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A + Y+   +  F  S+P L NSG     +S CFL  VPD ++G+     E   L+   G
Sbjct: 46  ASKLYSYSCAGWFGYSSPVL-NSGAGGLPIS-CFLMYVPDSIHGLISHTAELRWLSVLGG 103

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+   W  VRG        + KS G IPF+   +    A  QG  R+G+  AY+   H D
Sbjct: 104 GVAGHWDAVRG-------PSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPD 156

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+             
Sbjct: 157 IVEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTS----------- 205

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHV 576
                           K+ + + A  LW ++L   F TG P++ F D  N  +    +  
Sbjct: 206 ----------------KIVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTK 249

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G+ +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR+LDNV
Sbjct: 250 GLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVRMLDNV 303

Query: 636 ID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           ++        ++ HT      ++   R++G+G MG+   L    IP+    A  + DE  
Sbjct: 304 MEDFISRAPTLSAHTANAVAGAS-GERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIF 362

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
             I   A+SAS +LA E+G               P D +G                    
Sbjct: 363 GAIKAAALSASKKLAAEKGE--------------PPDLVGY------------------- 389

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                    G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N +L 
Sbjct: 390 ---------GVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLE 440

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ RQ+ +
Sbjct: 441 RDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHL 500

Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            Q QS+NL+    + K KL  ++R AW +  K  YYLR+++  +  K
Sbjct: 501 CQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKANRTSRK 547


>gi|259417280|ref|ZP_05741199.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346186|gb|EEW58000.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
          Length = 710

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 187/667 (28%), Positives = 306/667 (45%), Gaps = 80/667 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           D  Y + F F  +LG    Y  Y L   +G R    + +  RV M         EK A++
Sbjct: 86  DAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR--YLERYEDRVVMNALTLARGDEKLAMK 143

Query: 342 FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             + +    F  +TPT  N+G +   +  SCFL  + D++  I   +     L+K  GG+
Sbjct: 144 LMSEIIDGRFQPATPTFLNAGKKARGEFVSCFLLRLEDNMESIGRGINSALQLSKRGGGV 203

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 204 ALMLTNIREHGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIL 263

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-E 519
            FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG+ F E
Sbjct: 264 RFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---HDVEKVYGQAFSE 320

Query: 520 IAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I+  E Y    D  +I+  +KI+A A ++ +  + FE+G+P+I F+D  N  +P    G 
Sbjct: 321 ISVTEKYHEMVDNPQIRK-KKINARAFFQTIAEIQFESGYPYIMFEDTVNAANPI--AGR 377

Query: 579 VHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI  +N +SE               CNLGS+N+         D   LA T+ 
Sbjct: 378 IAMSNLCSEILQVNEASEFNDDLSYAQMGTDISCNLGSMNIA-----RAMDGGDLAGTVG 432

Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TA+R L+ V +++   ++   +K N    AIGLG M     L    I Y S E V+  + 
Sbjct: 433 TAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQMNLHGYLARERIHYGSAEGVDFTNI 492

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG--------LLAEVRDEL 736
               + +HA+SAS  LA+E+ A +  F+ S +  G F    +G         + E+ +  
Sbjct: 493 YFCTVLYHALSASNALAKEKKAKFKGFEDSAYADGSFFEKYVGQDWLPETDRVKELFEAA 552

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +R  W+ L+ +V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 553 GIEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSISYINYATSSIHPITAKIEIRK--- 609

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852
                                          +G IG +      + +D  + +  A++I 
Sbjct: 610 -------------------------------EGKIGRVYYPAPYMTNDNLEYYRDAYDIG 638

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P  +I++ +   + +DQ  SL L+   E S + ++     AW  G+KT YY+R R   ++
Sbjct: 639 PEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-QAL 697

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 698 EGTEVEG 704


>gi|299780592|gb|ADJ39954.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage T4T]
          Length = 754

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+K  YY  +R  +  +
Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737


>gi|113951999|gb|ABI48936.1| NrdA [Enterobacteria phage T6]
          Length = 754

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+K  YY  +R  +  +
Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737


>gi|292488818|ref|YP_003531705.1| ribonucleotide reductase subunit alpha [Erwinia amylovora CFBP1430]
 gi|292899969|ref|YP_003539338.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291199817|emb|CBJ46940.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554252|emb|CBA21548.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora
           CFBP1430]
 gi|312172976|emb|CBX81231.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 761

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 197/698 (28%), Positives = 312/698 (44%), Gaps = 56/698 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259
           S+  LI ++ P+Y  + AR  +  LR++     ++ P    Q     EM    P     Y
Sbjct: 65  SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
             E        E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +    +EFE  Y  YE+    G I+  +++ AV L+  M+
Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFANQEEFERLYTQYEQD---GSIRK-QRVKAVDLFSLMM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A   ++  D  +LA+    AVR LD ++D   + I  AK+     R +G+G++
Sbjct: 464 LSAFNLGA--IDSLDDLQELAT---LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578

Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID+       +D  A+ N    L W+ L++ VKT G+RNS   A+ P+ T + I   + 
Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEALRESVKTHGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
            I+P   ++ +K++  G    VV  + + +     LWD
Sbjct: 634 GIEPPRGHISIKASKDGILRQVVPEYELLKDNYELLWD 671


>gi|113951988|gb|ABI48928.1| NrdA [Enterobacteria phage T2H]
          Length = 754

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+K  YY  +R  +  +
Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737


>gi|327311809|ref|YP_004338706.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
 gi|326948288|gb|AEA13394.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
          Length = 877

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 175/647 (27%), Positives = 308/647 (47%), Gaps = 74/647 (11%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGIFGALQENAML 393
           +Y+ ++S   + ++P  FN+ T+    +SCF   V D L        Y I+ AL  + ++
Sbjct: 210 YYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLTHPGRYCIYDALAYSGII 269

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            +  GG+G D++ +R  G  + G+ G + G I F+K+ +     + QGGKR+GA    L 
Sbjct: 270 QQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMKLFDANVDVIKQGGKRRGAQMGTLH 329

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWTLFSPDEVSDL 510
            WH D+ +F+  +     D     + N + ++ D FM++   V QN  + L +P      
Sbjct: 330 VWHPDIRKFIKAKTGELKDAH-LQNFNISVFVDDTFMEKALGVDQNPKYPLINP------ 382

Query: 511 HDLYGKEFEIAYENYE--RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
              Y K  + A E+ +  ++A+     ++ ++ A  L+R++    +++G P + FK   N
Sbjct: 383 RVFYDKTGQKAVEHVDVYKEAEVPRDAIWGEVDASQLFREISNSAWDSGDPGLIFKANLN 442

Query: 569 IRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
             +P           +   +  S N C E   N       VCNL  INL+    +N    
Sbjct: 443 ASNPLLGEEIEVAGYRFTYIWRSVNPCAETVQNPFE----VCNLTHINLVKFIKDNCAGS 498

Query: 616 --------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D++ LA   R   R LD+ ID +   IE   + N   R  GLG+MGF   L
Sbjct: 499 SFEEKLACIDWEGLAQAARLGTRFLDSAIDRSRTGIEIVDEMNSATRKNGLGIMGFAELL 558

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------- 719
             L IPYAS EAVE+ +  M +I  +A+ AS +LA+E+G +  F+ S++ +G        
Sbjct: 559 IKLGIPYASWEAVELINRIMGWIYVNALDASADLAREKGPFKYFEKSIYARGELPALKFQ 618

Query: 720 ------------VFPIDSIGLLAEVRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAI 766
                       V+P +       +R+     R   LP+ ++LK++VK  G+RNS  ++I
Sbjct: 619 DFVWSRWERVKHVYPPELRDAGDRLREITERTRQWLLPYIEKLKEKVKG-GVRNSVVLSI 677

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT   + + G +  I+P +   ++++   G         +  LK R LW  A+   ++ 
Sbjct: 678 APTGRTSILAGTTSGIEPVFALAFLRNVTVGTLVEYYEPGIEYLKARGLWTPAVRKAVE- 736

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKK 884
             G + +   +P+D+K + ATA EI  +W +   +  Q+W+DQ  ++++N+  + PS   
Sbjct: 737 ETGMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPS-DD 794

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           + + +  AW +G+K  T Y  +S+S   +     + +  KL    +T
Sbjct: 795 VYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLAETKIT 841


>gi|222099545|ref|YP_002534113.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
 gi|221571935|gb|ACM22747.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
          Length = 836

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 192/676 (28%), Positives = 320/676 (47%), Gaps = 109/676 (16%)

Query: 300 ILYDRYFLH-INGSRIE---------MPQAFFMRVAMGLALKETEKEKRAVE----FYNL 345
           IL DRYF+  ++G  +E         + +       +  + K+ EK  R  E    F+ +
Sbjct: 31  ILKDRYFMRDLDGKYLETRWEDVARRVARVVATAELLNPSYKKGEKLDRIKEWEDTFFKI 90

Query: 346 LSSFHFMCSTPTLFNSG-------------------------TRHP--QLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G                         TR+    LS+CF+  V D
Sbjct: 91  LKARLFLPNSPTLFNAGLGVRYELLWKPIDQMTLEDYEEIYRTRNHLHMLSACFVVPVGD 150

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 151 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 210

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D ++            NT   + + F         
Sbjct: 211 KQGYRRRGALMGILNIDHPDIEEFIDAKRE-----------NTGEAVLNFF--------N 251

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            ++  P +  ++  LY ++ E+   ++ R   R  +K+        L+RK+ +  +++G 
Sbjct: 252 LSVGIPMDKKEILKLYEEDGELEL-SHPRSTIRKRVKIRE------LFRKIASNAWKSGD 304

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617
           P + F    N   P      ++S+N C EI L+    +   CNLGSI++ A F NN F D
Sbjct: 305 PGLAFLGEMNRYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 359

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + L   ++ AVR LD+VID+N   I+K  K+    R +GLG+MGF   L+ L +PY S 
Sbjct: 360 LEALQELVQIAVRFLDDVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLELPYDSQ 419

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW--DQGVFP--IDSIGLLAEVR 733
           EA + A   M FI+ HA  AS EL +E+G +   + S +  ++G  P  + +     E+R
Sbjct: 420 EARDFASNLMAFIALHAHRASYELGKEKGNFPLLEISRYRTEEGFVPFAMGTSNYDDEIR 479

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + M R  R               RN   + IAPT +I+NI   S  ++P++   Y + 
Sbjct: 480 EVMKMTREYR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRY 524

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               D T      VN++ +  L  E +  I       GS+ +I  +P+ +K++   A +I
Sbjct: 525 MTKEDGTKEPLLYVNQVLREKLDPEILRRIEKDLIEKGSLKDIPDVPEKIKRVFVVALDI 584

Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLDE-PSGKKLDFIYRQAWLMG 896
           DP+   L++ A +R       K I+  QS      LN+YL+   +  +   IYR   L  
Sbjct: 585 DPIDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITIYRDGSLQT 644

Query: 897 LKTTYYLRSRSATSVE 912
              T  L++  A  V+
Sbjct: 645 QVLTKALKTPEAPKVQ 660


>gi|116326447|ref|YP_803167.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
 gi|115344040|gb|ABI95049.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
          Length = 754

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 343/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+K  YY  +R  +  +
Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737


>gi|84386982|ref|ZP_00990006.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
 gi|84378272|gb|EAP95131.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
          Length = 760

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 190/696 (27%), Positives = 306/696 (43%), Gaps = 50/696 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYG----------EYEPPALY-DHVAKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E     +   L   + ++RD  F Y  ++ L  +YF+   +     E  Q  
Sbjct: 113 GKYDSHLMEDYTKAEFEELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q 
Sbjct: 291 CCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552
              +LFSP +V  L+D +    + FE  Y  YE      +  V R+ + AV L+  ++  
Sbjct: 351 GNISLFSPSDVPGLYDAFFENQERFEALYVKYE-----NDPSVKRETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL    A N+   D LA      VR LD ++D   + +  A+KS    R +G+G++ +
Sbjct: 466 AFNL---GAINEL--DDLAELSELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       +D +L         WD L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----KDIDLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
           +P    + VK++  G    VV  FL  +     LW+
Sbjct: 636 EPPRGYVSVKASKDGILKQVVPDFLNLKDNYELLWN 671


>gi|114563304|ref|YP_750817.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           frigidimarina NCIMB 400]
 gi|114334597|gb|ABI71979.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 762

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 208/784 (26%), Positives = 338/784 (43%), Gaps = 89/784 (11%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214
           S +  ++  ++  A  GL++VS   V   ++   +DG+    +   +I ++  LI  E P
Sbjct: 16  SIDLDKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESP 75

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  V AR  +  LR++               E   LY ++  + +E G     +     
Sbjct: 76  DYQFVAARLAVFHLRKKAFG----------QFEPPTLY-DHVTKLVEIGKYDMHIMADYS 124

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332
             +L  L   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L  + 
Sbjct: 125 REELDILDTYIDHWRDLNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFARY 184

Query: 333 TE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQ 388
            +  + K   +FY+  S F     TP +  +G R P  Q SSC L    D L  I     
Sbjct: 185 PKEIRLKYIKDFYDATSLFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATAS 242

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
                     G+G +   +R LG+ I G      G +PF K       + +QGG R GA 
Sbjct: 243 SIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAA 302

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +    +LFSP +V 
Sbjct: 303 TLFYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGEYISLFSPSDVP 362

Query: 509 DLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            L+D + +   EFE  Y  YE+ ++  +    ++I AV L+  M+     TG  +I   D
Sbjct: 363 GLYDAFFEDQAEFERLYLQYEQDSNIRK----KQIKAVELFSLMMQERASTGRIYIQNVD 418

Query: 566 PCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQF 616
            CN  SP    V  +  SNLC EI L        +    E A+C L ++NL A       
Sbjct: 419 HCNTHSPFDSKVAPIKQSNLCLEIALPTKPLTNIDDPDGEIALCTLSALNLGA-----IK 473

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L      Y+ 
Sbjct: 474 DLSELEPLADLAVRALDNLLDYQDYPIKAAQTSSMNRRTLGIGVINFANYLAKNGKKYSD 533

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDE 735
             A  +  ++ E I F+ + AS+ LA+E+GA   F  + + +G+ PID+    L ++ DE
Sbjct: 534 GSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFHETTYSKGILPIDTYKRDLDKICDE 593

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   + W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++ 
Sbjct: 594 -----PLHMDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASK 648

Query: 796 SGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            G    VV  F + + K   LW      ++  +DG                         
Sbjct: 649 DGQLKQVVPDFELLKDKYELLW------NMPNNDG------------------------- 677

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL--------MGLKTTYYLRSR 906
             I+     QK+IDQA S N   D PS  +   +  Q  L        +G+KT YY  +R
Sbjct: 678 -YIQLVGLMQKFIDQAISANTNYD-PSRFEGGRVPMQTLLKDLLSVYKLGIKTLYYHNTR 735

Query: 907 SATS 910
              S
Sbjct: 736 DGAS 739


>gi|113970254|ref|YP_734047.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-4]
 gi|113884938|gb|ABI38990.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-4]
          Length = 762

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 206/791 (26%), Positives = 347/791 (43%), Gaps = 93/791 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++  A  GL++VS   V   T+   +DG+    +   +I S+  LI  E P+Y  +
Sbjct: 21  KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + +E G     + +     +L 
Sbjct: 81  AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L      KE 
Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ +    +LFSP +V  L+D
Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE+ +   +    + + AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L        +  + E A+C L ++NL A    N  + + 
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA     AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    + Y+   A 
Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
            +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   +
Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEQGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652

Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             VV  F  +ELK    ++  ++  +  ++G                           ++
Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680

Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909
                QK++DQA S N   D     G+K+       D +   A+ +G+KT YY  +R   
Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738

Query: 910 SVEKSTLKGVD 920
           S +   +  ++
Sbjct: 739 SDQHDDITNIE 749


>gi|170288626|ref|YP_001738864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281412178|ref|YP_003346257.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
 gi|170176129|gb|ACB09181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281373281|gb|ADA66843.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
          Length = 827

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 303/641 (47%), Gaps = 108/641 (16%)

Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345
           IL DRYF+  ++G+ +E           +       +  + K+ EK  R  E    F+ +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G   +H                           LS+CF+  V D
Sbjct: 82  LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K            NT   + + F      + G
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  ++  LY ++ E+     E    R  I+  +K+    L+RK+ T  +++G 
Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617
           P + F    N   P      ++S+N C EI L+    +   CNLGSI++ A F NN F D
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S 
Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733
           EA + A   M FI+  A   S EL +E+G +   + S +   D  V F +       E+R
Sbjct: 411 EARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + M +  R               RN   + IAPT +I+NI   S  ++P++   Y + 
Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               D T      VN++ +  L  E +  I       GS+ +I  +P+ +KK+   A +I
Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575

Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878
           DPM   L++ A +R       K I+  QS      LN+YL+
Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616


>gi|21672461|ref|NP_660528.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091141|sp|Q8K9W3|RIR1_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|21623076|gb|AAM67739.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 763

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 201/799 (25%), Positives = 354/799 (44%), Gaps = 87/799 (10%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           +G     N  ++  ++  A  GL+++S   V   +    Y+ +S  ++   +I ++  LI
Sbjct: 11  NGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRIQFYNNISTVNIHETIIKAAADLI 70

Query: 211 -EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E  P+Y  + AR  +  LR++     ++ P    H +      +Y           +LL
Sbjct: 71  SENTPDYQYMAARLAIFHLRKKAYGQ-FEPPNLYYHVKKMVQLGKY---------DEKLL 120

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327
                + + V + + + + RD  F Y  ++ L  +Y L   + G   E  Q  ++ ++  
Sbjct: 121 QNYSFE-EYVEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQFLYILISAC 179

Query: 328 LALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGI 383
           L  K  +K +      FYN +S+F     TP +  SG R P  Q SSC L    D+L  I
Sbjct: 180 LFSKYEKKVRMNYIQRFYNAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECADNLNSI 237

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
                          G+G +   +R LG+ I        G IPF K       + +QGG 
Sbjct: 238 NATTSAIVKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGGV 297

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   +   WH+++E  L L+ N G +  R   ++ A  I  L  +R+      TLFS
Sbjct: 298 RGGAATVFYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLLGQKITLFS 357

Query: 504 PDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           P +V  L++ +    K+F+  Y  YE+  +  +    + I+A+ L+  ++     TG  +
Sbjct: 358 PSDVPKLYEFFFSDQKKFKEIYIKYEKNRNIRK----KSINAIDLFCLIMRERASTGRIY 413

Query: 561 ITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHF 611
           I   D CN  S     +  +  SNLC EITL        +  + E A+C L ++NL    
Sbjct: 414 IQHVDHCNSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLSALNL--GL 471

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N+  D  +L++    +VR LD +++   + +  AKKS  + R++G+G++ F   L    
Sbjct: 472 INDLHDLKELST---LSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINFAYYLAKNK 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+G+ S F  + +  G FPID+      
Sbjct: 529 VRYSDGSAKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPIDTYK---- 584

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +D +   N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 585 -KDIDSICNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643

Query: 791 VKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +KS+  G    VV  +   + +   LW+                   IP+++  +   A 
Sbjct: 644 IKSSKDGMLRQVVPEYKKLKSEYELLWE-------------------IPNNIGYLELVAI 684

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL------YLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
                         QK++DQ+ S N       +L+E    K+L +    A+ +G+KT YY
Sbjct: 685 -------------MQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKLGIKTLYY 731

Query: 903 LRSRSATSVEKSTLKGVDG 921
             +R      ++  K ++ 
Sbjct: 732 QNTRDGAEDNQNLNKSIEN 750


>gi|332534564|ref|ZP_08410399.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035984|gb|EGI72463.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 760

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 210/795 (26%), Positives = 343/795 (43%), Gaps = 87/795 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++       +P +   H  + +  +   RY   
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQF--EPPRLFDHVTKMVGDK---RY--- 115

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A LL +   + +L  L   L + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 116 --DAHLLVD-YTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L   +  +E R      FY+ +S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAASL-FSDYPRETRTDYIKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+HI        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQAEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++     L      AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDTLRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G   ++   +    + +D ++  ++ D+  +DG             
Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDQYE--LLWDIPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLM 895
                         ++     QK++DQ  S N   D    E     +  + +    A+ +
Sbjct: 678 -------------YLQLVGIMQKFVDQTISANTNYDPNKFEGGKVPMQVLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATS 910
           G+KT YY  +R   S
Sbjct: 725 GVKTLYYHNTRDGAS 739


>gi|217076775|ref|YP_002334491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
 gi|217036628|gb|ACJ75150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
          Length = 838

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 174/595 (29%), Positives = 290/595 (48%), Gaps = 86/595 (14%)

Query: 317 PQAFFMRVAMGLAL-KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG--TRHP------- 366
           PQ   M  A  L + KETE+      F+ +L +  F+ ++PTLFN+G   RH        
Sbjct: 60  PQVKKMDDAKKLEIIKETEET-----FFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIE 114

Query: 367 ------------------QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                              LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R
Sbjct: 115 NMTLSDYQEIYNTRNHLHMLSACFVVPVDDSINGIFEAVKEYALITKAGGGIGSNFSSLR 174

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ + GT+G++ G + F+ V N     V QG KR+GA+   L   H D+EEF+  ++N
Sbjct: 175 PKGSFVAGTHGQASGPVSFMHVFNSAIGVVEQGYKRRGALMGILNINHPDIEEFITAKEN 234

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D  +     N +  IP               F   E+  L++  G E E+++  +  +
Sbjct: 235 N-DGEKVLKYFNISVGIP---------------FDKKELLRLYEEDG-EIELSHPKFTEK 277

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                    R I A  + +++    ++TG P + F    N   P      + S+N C EI
Sbjct: 278 ---------RYIKARDIIKQIAENAWKTGDPGLAFLHEMNKYYPLYPEMKIISTNPCGEI 328

Query: 589 TLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            L         CNLGSI+ +A F   + Q D+D L  T+R AVR LDNVID+N   +EK 
Sbjct: 329 GLAPYE----ACNLGSID-VAKFVTDDGQVDWDALEDTVRLAVRFLDNVIDVNVFPLEKI 383

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             +    R +GLG+MGF   L+ L IPY S E  + A + M F++ H    S +L +E+G
Sbjct: 384 TNAVRNSRRLGLGIMGFADLLYKLDIPYNSEEGRQFAADLMGFMALHGHDESNKLGREKG 443

Query: 707 AYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           ++  F K   + +  F   ++G+     D   + R S+             G RN   + 
Sbjct: 444 SFPLFEKSKFFKEEEFVPFAMGMSKYDEDIKKVMRESKK------------GKRNVAVLT 491

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+NI   S  ++P++   YV+     D T  + F VN++ ++ L D  ++  +K
Sbjct: 492 IAPTGSISNIADTSSGLEPNFLLAYVRYMNKHDGTKESLFYVNKVLEKKL-DPKILEKIK 550

Query: 826 ---YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875
                 GS+ +++ +P+++KK+  TA +I PM  +      Q+++D   ++++N+
Sbjct: 551 EKLIEKGSLQDLD-VPEEIKKVFVTAMDISPMVHLLMQDAFQRYVDNNISKTINM 604


>gi|332993181|gb|AEF03236.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp.
           SN2]
          Length = 773

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 204/795 (25%), Positives = 342/795 (43%), Gaps = 89/795 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G   S + +++  +V  A  GL++VS   V  +     +DG++ S++   LI 
Sbjct: 5   LSVTKRNGEQESIDLEKIHKVVTWAAKGLENVSVSQVEIKAQIQFFDGINTSEIHETLIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  + P+Y  + AR  +  LR++               E   L+ E+    +E G
Sbjct: 65  SAADLISTDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALF-EHVTNMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLIEDYTAEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L     +  + +    FY+  S+F     TP +  SG R P  Q SSC L    
Sbjct: 174 ILVAACLFANYPKDTRMSYIRRFYDAASTFKLSLPTPIM--SGVRTPTRQFSSCVLIETG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDD 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +    ++FE  Y  YE   +  +    ++I A+ L+   +    
Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFERLYVQYENDDNIRK----KRIKAMELFSLFMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    V  V  SNLC EI L        N    E A+C L + 
Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  + ++F  ++L+     AVR LDN++D   + +  A  +    R +G+G++ F  
Sbjct: 468 NLGAIKSLDEF--EELSD---LAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PIDS
Sbjct: 523 YLAKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDS 582

Query: 726 IGLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                  + +L    N      WD L++ +KT G+RNS   A+ P+ T + I   +  ++
Sbjct: 583 ------YKKDLDGVCNEPLHYDWDALREEIKTHGLRNSTLSALMPSETSSQISNATNGVE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +KS+  G   V+   +    + RD ++  ++ D+  +DG              
Sbjct: 637 PPRGFISIKSSKDG---VLKQVVPEYERLRDQYE--LLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-----IYRQAWLM 895
                        ++     QK+IDQ  S N   D PS   G K+            + +
Sbjct: 678 ------------YLQLVGIMQKFIDQTISANTNYD-PSRYDGNKVPMKLLLKDLLTTYKL 724

Query: 896 GLKTTYYLRSRSATS 910
           G+KT YY  +R   +
Sbjct: 725 GVKTLYYHNTRDGAT 739


>gi|220980069|emb|CAP72261.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|323934217|gb|EGB30641.1| ribonucleoside-diphosphate reductase [Escherichia coli E1520]
          Length = 771

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGITTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++     Y  P           + ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110

Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
           V  K  L H S  + +   L N +K +RD  F Y     L  +Y +   + G   E PQ 
Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168

Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
            +M V M L  +  E +   K  +E    FY++ S+F     TP +  +G R P  Q SS
Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L GI  A            G+G  +  +R LG+ I        GVIPFLK 
Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  
Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ ++   TLFSP +V D+++ +  +   FE  Y  YE  AD    K  + + A+ L+ 
Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            ++     TG  +I   D  N        +  V  SNLC EITL        +  + E A
Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL A  +      + L      AV  LD+++D   + +E A+      R++G+
Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+  F   L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  
Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576

Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           G  PID    S+    E   EL M      PW+EL++R+   G+RNS   A  P  T + 
Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   +  I+P    + VKS+  G    VV  F   + +   LWD                
Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888
              +PD+   +   A               QK+ DQA S N   D PS   G K+  +  
Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717

Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910
                 A+ MG+KT YY  +R    
Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742


>gi|119944869|ref|YP_942549.1| ribonucleotide-diphosphate reductase subunit alpha [Psychromonas
           ingrahamii 37]
 gi|119863473|gb|ABM02950.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychromonas ingrahamii 37]
          Length = 757

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 212/783 (27%), Positives = 328/783 (41%), Gaps = 93/783 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKV 219
           ++  ++  A  GL++VS   V   ++   YDG+   D+   +I ++  LI E  P+Y  +
Sbjct: 21  KIHRVITWAAEGLKNVSVSQVELNSHIQFYDGIRTDDIHETIIKAAADLISETSPDYQYL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            A   +  LR++     +  P    H    C   +Y    +E+  K     E M  F   
Sbjct: 81  AAHLAVFHLRKKAYRR-FTPPSIFEHVSKMCSKGKYDMHLLEDYSKQEF--EEMEKF--- 134

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
                + ++RD  F Y  ++ L  +Y +   + G   E  Q  +M VA  L     E   
Sbjct: 135 -----IVHDRDLKFSYAAVKQLEGKYLIQNRVTGDIYESAQFLYMMVAACL-FSNYEPAI 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R      FY+ +S F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLSYVRRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIETGDSLDSINATSSAIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G IPF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATVFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G D  R   ++    +  LF +R+       LFSP +V  L+D
Sbjct: 307 PVWHLEVESLLVLKNNRGIDSNRIRHLDYGVQLSRLFYQRLIDKKNVALFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE   D  +    + ISAV L+  ++     TG  +I   D CN 
Sbjct: 367 AFFEDQDEFERLYNLYEGDPDIRQ----KSISAVELFSLLMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L +           E A+C L + NL A  + ++     
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLQHIMDEEGEIALCTLSAFNLGAIESLDE----- 477

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LD+++D   + ++ A+ S+   R +G+G++ F   L    + Y+   A 
Sbjct: 478 LEELAELAVRALDSLLDYQDYPVKAAENSSMARRTLGIGVINFAYYLAKNGVKYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN 739
            +  ++ E I ++ + AS +LA ERGA   F  + + QG+ P+D+    L  + DE    
Sbjct: 538 NLTHKTFEAIQYYLLKASNKLAFERGACPKFNETRYSQGILPLDTYKKSLDNICDE---- 593

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 594 -QYHLDWETLRSDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSVKASKDGIL 652

Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             VV  +   +     LWD                   IP++                +E
Sbjct: 653 KQVVPEYEKYKQNYELLWD-------------------IPNN-------------QGYLE 680

Query: 859 SASRRQKWIDQAQSLNLYLDE--------PSGKKL-DFIYRQAWLMGLKTTYYLRSRSAT 909
                QK+IDQA S N   D         P    L D +   A+ MG+KT YY  +R   
Sbjct: 681 LVGIMQKFIDQAISANTNYDPKRFSEGRVPMTNLLKDLLV--AYKMGVKTLYYHNTRDGA 738

Query: 910 SVE 912
             E
Sbjct: 739 DDE 741


>gi|295395247|ref|ZP_06805455.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972009|gb|EFG47876.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 720

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 184/662 (27%), Positives = 303/662 (45%), Gaps = 75/662 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF+ +   +   Y + F F+ +LG    Y  Y L   +G R +E  +   + VA+ LA  
Sbjct: 87  DFEFISELSKFAYSKKFRFQTFLGAFKFYTSYTLKTFDGKRYLERFEDRVVMVALFLARG 146

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           + E  +  VE    + +  F  +TPT  N+G +   +L SCFL  + D++  I  ++   
Sbjct: 147 DRELARNLVE---EIIAGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSA 203

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 204 LQLSKRGGGVAFSLTNIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 263

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 264 YLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDV 320

Query: 511 HDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YG  F      E Y+   D   I+   KI A   ++ +  + FE+G+P+I ++D  N
Sbjct: 321 EQVYGVPFSDISVTEKYDEMVDDARIRK-TKIRAREFFQTLAEIQFESGYPYIMYEDTVN 379

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQF 616
             +P    G +  SNLC+EI  ++ +SE  A            CNLGS+N+         
Sbjct: 380 RANPID--GKITMSNLCSEILQVSEASEYNADLTYAHVGKDISCNLGSLNIAM-----AM 432

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D D    T+ TA+R L  V D  N  ++   ++ N+   AIGLG M     L    I Y 
Sbjct: 433 DSDDFGRTVETAIRGLTAVSDTSNISSVPSIERGNNMSHAIGLGQMNLHGYLARESIHYG 492

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSI 726
           S E ++  +     +++HA+ AS+E+A+ERG A+  F+ S +  G +         +   
Sbjct: 493 SEEGLDFTNMYFYTVAYHAVRASMEIAKERGVAFEGFERSKYASGEYFEKYTQQEWVPRT 552

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             +A++ ++  ++  ++  W  L+  V T G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 553 QKVADLFEKAGVHIPTQDDWAALRDDVATYGIYNQNLQAVPPTGSISYINNSTASIHPIA 612

Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + + K    G       F+ N+                       N+E   D      
Sbjct: 613 SRIEIRKEGKIGRVYYPAPFMTND-----------------------NLEYYQD------ 643

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+E+    +I++ +   K +DQ  SL L+  D  + + ++     AW  G+KT YY+R
Sbjct: 644 --AYEVGYEKVIDTYAEATKHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIR 701

Query: 905 SR 906
            R
Sbjct: 702 IR 703


>gi|309797908|ref|ZP_07692289.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308118516|gb|EFO55778.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 771

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++     Y  P           + ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110

Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
           V  K  L H S  + +   L N +K +RD  F Y     L  +Y +   + G   E PQ 
Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168

Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
            +M V M L  +  E +   K  +E    FY++ S+F     TP +  +G R P  Q SS
Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L GI  A            G+G  +  +R LG+ I        GVIPFLK 
Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  
Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ ++   TLFSP +V D+++ +  +   FE  Y  YE  AD    K  + + A+ L+ 
Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            ++     TG  +I   D  N        +  V  SNLC EITL        +  + E A
Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL A  +      + L      AV  LD+++D   + +E A+      R++G+
Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+  F   L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  
Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576

Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           G  PID    S+    E   EL M      PW+EL++R+   G+RNS   A  P  T + 
Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   +  I+P    + VKS+  G    VV  F   + +   LWD                
Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888
              +PD+   +   A               QK+ DQA S N   D PS   G K+  +  
Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717

Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910
                 A+ MG+KT YY  +R    
Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742


>gi|262274471|ref|ZP_06052282.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
 gi|262221034|gb|EEY72348.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 209/805 (25%), Positives = 343/805 (42%), Gaps = 87/805 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G   + +  ++  ++  A  GL +VS   V   ++   YDG+   D+   +I
Sbjct: 4   QITVLKRSGIKENIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++     ++ P    H            + +E 
Sbjct: 64  KAAADLISEETPDYQYLAARLAVFHLRKKAYGR-FEPPTLLDH----------VNKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  L + + + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEELNILDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L      KE R      FY+ +S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YIMVAACL-FANYPKETRLDYIRRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVRYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE   D    +  RK  AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFADQAEFERLYVKYEN--DPSIQRETRK--AVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPIRQSNLCLEIALPTKPLTNVEDDQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L       +R LD+++D   + +  A+K+    R +G+G++ F
Sbjct: 466 AFNLGA-----IKELDELEELADLTIRALDSLLDYQDYPLPAARKATMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+ERGA  +F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHRTFEAIQYYLLKASVGLAKERGACPAFNETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+       RD  A+ +      WD L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYK-----RDLDAICDEPLHYDWDALRAEIIEHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + +K++  G   ++   +    K +D ++  ++ +++ +DG             
Sbjct: 636 EPPRGFVSIKASKDG---ILKQVVPEYEKYKDSYE--LLWNIESNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLM 895
                         ++     QK++DQA S N   D   +P GK  +  + +    A+ +
Sbjct: 678 -------------YLQLVGLMQKFVDQAISANTNYDPSKQPGGKVPMKLLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           G+KT YY  +R      +  L   D
Sbjct: 725 GVKTLYYHNTRDGADDAQKDLAAQD 749


>gi|283852533|ref|ZP_06369801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
 gi|283572141|gb|EFC20133.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
          Length = 743

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 176/619 (28%), Positives = 294/619 (47%), Gaps = 85/619 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351
           +L  RY +   +GS +E  +  F RVA  +A +E +        E  A  FY+L+    F
Sbjct: 22  VLAKRYLMKGPDGSPLEDVRGLFWRVAAAIAAEEAKYGNSPFAPEDLARRFYDLMVGMRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 82  LPNSPTLMNAGTPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   +
Sbjct: 142 ARVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFITCKERENE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + + FM+ V +   + L  P + +                       
Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLIDPRDKA----------------------- 234

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V  + SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L 
Sbjct: 235 ----VVGRQSAADVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGS+NL       A +  D+  L  T+  AVR LDNVID + + +++   
Sbjct: 291 PYE----ACNLGSVNLAVFHDPAAPDGIDWAGLTETVHLAVRFLDNVIDASRYPLDQITD 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLGLMGF   L+LLHIPY S EA+++A+  M+ I   + SAS  LA ERG +
Sbjct: 347 MVQANRKIGLGLMGFADLLYLLHIPYDSTEALKLAERIMDTIQGESKSASKALAAERGPF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIA 767
            ++  S++ +                                   + +G  RN+    IA
Sbjct: 407 PAYPDSIFGK-----------------------------------RNLGPYRNATTTTIA 431

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I G S  I+P +   + +  M G+  V  N   VN +K+   + ++++ ++  
Sbjct: 432 PTGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANVHFVNAMKEAGAYSDSLMEEVT- 490

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
             GSI +I  +PD L+++  TA +I+P+W ++  +  QK+ D A S  + L ++ +   +
Sbjct: 491 RKGSIAHIGMLPDALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNDATQDDI 550

Query: 886 DFIYRQAWLMGLKTTYYLR 904
             IYR A+ +G K     R
Sbjct: 551 REIYRLAYELGCKGVTVYR 569


>gi|293411956|ref|ZP_06654681.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|291469511|gb|EFF12000.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
          Length = 771

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 221/805 (27%), Positives = 348/805 (43%), Gaps = 103/805 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++     Y  P           + ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR-YDYPN----------FYQHIVKNVNKG 110

Query: 264 V--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
           V  K  L H S  + +   L N +K +RD  F Y     L  +Y +   + G   E PQ 
Sbjct: 111 VYDKDLLTHYSFEEIE--ELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQH 168

Query: 320 FFMRVAMGLALKETEKE---KRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
            +M V M L  +  E +   K  +E    FY++ S+F     TP +  +G R P  Q SS
Sbjct: 169 IYMLVGMCL-FQNWEDDCAGKTRMEMVKGFYDITSTFKLSLPTPIM--AGVRTPTRQFSS 225

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L GI  A            G+G  +  +R LG+ I        GVIPFLK 
Sbjct: 226 CVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKH 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  
Sbjct: 286 FQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMY 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ ++   TLFSP +V D+++ +  +   FE  Y  YE  AD    K  + + A+ L+ 
Sbjct: 346 RRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYE--ADDSIRK--KSVPAIELFS 401

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            ++     TG  +I   D  N        +  V  SNLC EITL        +  + E A
Sbjct: 402 SLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIA 461

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL A  +      + L      AV  LD+++D   + +E A+      R++G+
Sbjct: 462 LCTLSAFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGI 516

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+  F   L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  
Sbjct: 517 GVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAI 576

Query: 719 GVFPID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           G  PID    S+    E   EL M      PW+EL++R+   G+RNS   A  P  T + 
Sbjct: 577 GQLPIDHYRSSLDESGETNFELKM------PWEELRERIAKYGLRNSTLTAQMPCETSSQ 630

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   +  I+P    + VKS+  G    VV  F   + +   LWD                
Sbjct: 631 ITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWD---------------- 674

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFI-- 888
              +PD+   +   A               QK+ DQA S N   D PS   G K+  +  
Sbjct: 675 ---MPDNRGYLTKVAI-------------IQKFFDQAISANTNYD-PSRFEGDKVPMMTL 717

Query: 889 ---YRQAWLMGLKTTYYLRSRSATS 910
                 A+ MG+KT YY  +R    
Sbjct: 718 LSDLLLAYKMGVKTLYYHNTRDGAG 742


>gi|148269941|ref|YP_001244401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
 gi|147735485|gb|ABQ46825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
          Length = 827

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 189/641 (29%), Positives = 303/641 (47%), Gaps = 108/641 (16%)

Query: 300 ILYDRYFLH-INGSRIEMP---------QAFFMRVAMGLALKETEKEKRAVE----FYNL 345
           IL DRYF+  ++G+ +E           +       +  + K+ EK  R  E    F+ +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG--TRHP-------------------------QLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G   +H                           LS+CF+  V D
Sbjct: 82  LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K            NT   + + F      + G
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKE-----------NTGEAVLNFF----NLSVG 246

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  ++  LY ++ E+     E    R  I+  +K+    L+RK+ T  +++G 
Sbjct: 247 F----PMDKKEILKLYEEDGEL-----ELSHPRSTIR--KKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-D 617
           P + F    N   P      ++S+N C EI L+    +   CNLGSI++ A F NN F D
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDV-AKFYNNGFVD 350

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S 
Sbjct: 351 LEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQ 410

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGV-FPIDSIGLLAEVR 733
           EA + A   M FI+  A   S EL +E+G +   + S +   D  V F +       E+R
Sbjct: 411 EARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIR 470

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + M +  R               RN   + IAPT +I+NI   S  ++P++   Y + 
Sbjct: 471 EVMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRF 515

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               D T      VN++ +  L  E +  I       GS+ +I  +P+ +KK+   A +I
Sbjct: 516 VTKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDI 575

Query: 852 DPM--WLIESASRR------QKWIDQAQS------LNLYLD 878
           DPM   L++ A +R       K I+  QS      LN+YL+
Sbjct: 576 DPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLE 616


>gi|284009346|emb|CBA76527.1| ribonucleoside-diphosphate reductase 1 alpha chain [Arsenophonus
           nasoniae]
          Length = 767

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 186/675 (27%), Positives = 301/675 (44%), Gaps = 51/675 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL+DVS   V   +    YDG+  SD+   +I 
Sbjct: 9   LLVTKRDGHKERIDLDKIHKVITWAAEGLKDVSVSQVELRSQIQFYDGIKTSDIHETMIK 68

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++       +P     H +  +    + +++   
Sbjct: 69  AAADLISADTPDYQYLAARLAIFHLRKKAYGQF--EPPALYQHVLHMVKIGKYDKHLLTD 126

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
             A    E M  F        L + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 127 YSAEEF-EQMDSF--------LDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 177

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 178 ILVAACL-FSRYPKETRLDYIHRFYDAISNFKISLPTPIM--AGVRTPTRQFSSCVLIEC 234

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 235 GDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 294

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ ++
Sbjct: 295 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQINKLMYERLIKS 354

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V+ L++ +     EFE  Y  YE+ A   +    +++ A+ L+  M+   
Sbjct: 355 EEITLFSPSDVAGLYEAFFADQSEFERLYLKYEQDASIRQ----KRVKALDLFSLMMQER 410

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L +
Sbjct: 411 ASTGRIYIQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTRPLNDINDEKGEIALCTLSA 470

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  +      D+L      AVR LD+++D   + I  A+K +   R +G+G++ + 
Sbjct: 471 FNLGAITS-----LDELEELAVLAVRALDSLLDYQNYPIIAAEKGSMGRRTLGIGVINYA 525

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID
Sbjct: 526 YYLAKHGVHYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNDTTYAKGILPID 585

Query: 725 SI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S    L A   + L  +      W  L+K +K  G+RNS   A+ P+ T + I   +  I
Sbjct: 586 SYKKSLDALTSEPLHYD------WQTLRKNIKQYGLRNSTLSALMPSETSSQISNATNGI 639

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + +K++  G
Sbjct: 640 EPPRGYISIKASKDG 654


>gi|146293169|ref|YP_001183593.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           putrefaciens CN-32]
 gi|145564859|gb|ABP75794.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella putrefaciens CN-32]
          Length = 762

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 206/783 (26%), Positives = 340/783 (43%), Gaps = 95/783 (12%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   YDG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++               E   LY ++  + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D + +   EFE  Y  YE+ +   +    + I AV L+  M+     TG  +I   D CN
Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  +  SNLC EI L        +  + E A+C L ++NL A       +  
Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA-----IKELS 476

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+   A
Sbjct: 477 ELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
             +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   
Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G 
Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651

Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              VV  F   +     LW       +  +DG                           +
Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907
           +     QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R 
Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736

Query: 908 ATS 910
             S
Sbjct: 737 GAS 739


>gi|319426319|gb|ADV54393.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           putrefaciens 200]
          Length = 762

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 206/783 (26%), Positives = 340/783 (43%), Gaps = 95/783 (12%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   YDG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++               E   LY ++  + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DLMNTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D + +   EFE  Y  YE+ +   +    + I AV L+  M+     TG  +I   D CN
Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  +  SNLC EI L        +  + E A+C L ++NL A       +  
Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA-----IKELS 476

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+   A
Sbjct: 477 ELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
             +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   
Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G 
Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651

Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              VV  F   +     LW       +  +DG                           +
Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907
           +     QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R 
Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736

Query: 908 ATS 910
             S
Sbjct: 737 GAS 739


>gi|255928975|ref|YP_003097287.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
 gi|255705261|emb|CAR63250.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
          Length = 772

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 199/729 (27%), Positives = 326/729 (44%), Gaps = 65/729 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +K+    G + + N  ++  +VEEAC GL   VS+  V   +    +DG+   D++  L+
Sbjct: 7   IKVKKRSGAVEALNLDKIHKMVEEACEGLGSGVSASQVEMNSGLQFFDGIETKDIQEILV 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKAT-HHEMQCLYPEYFCRYIE 261
            S+  LI  + PNY  V AR LL  +R++V    +     +   H  +C         + 
Sbjct: 67  RSASDLISLDTPNYQFVAARLLLFAVRKQVFGAGWVNGHPSVFEHATKC---------VS 117

Query: 262 EGV-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
           +GV    +L +  ++ +   + + + ++RD  F Y GL+ + D+Y +    +G   E PQ
Sbjct: 118 KGVYDGDILGKYSLE-EWSKINSWIDHDRDMLFTYAGLRQVVDKYLVQDRSSGEMYETPQ 176

Query: 319 AFFMRVAMGLALK-ETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
             +M +A+ L     TE     V+ +YN +S       TP +  +G R P  Q +SC L 
Sbjct: 177 YMYMMIAVTLFQNYPTETRLEYVKRYYNAISKHKINIPTPIM--AGVRTPLRQFASCVLV 234

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T
Sbjct: 235 DSDDTLDSIFTSDMAIGRYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEAT 294

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
                Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  
Sbjct: 295 VRCCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFI 354

Query: 495 QNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            N   +LFSP +V  L+D +G   F+  Y  YE   D  +    R+I A  L   +L   
Sbjct: 355 NNEEISLFSPHDVPGLYDAFGTPGFDDLYRAYEFDPDVPQ----RRIGAQELLLALLKER 410

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVC-----N 601
            ETG  +I   D CN  S       V+ SNLC EITL +          E A+C     N
Sbjct: 411 AETGRVYIMNIDHCNEHS--SFTDKVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAIN 468

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           +G IN L          D L +    AVR L+ +ID   + +  A+ S    R++G+G +
Sbjct: 469 VGKINKL----------DDLENLCDLAVRGLEELIDYQDYPVRAAELSTLNRRSLGIGYI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L      Y  P A ++  +  E   ++ + +S  +A+E+G    F  + + QG+ 
Sbjct: 519 GLAHYLAKHGEHYDDPAAWKLVHDLSESFQYYLLKSSNTVAKEKGKCGYFDRTKYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+        DE       R  W+ L+  + T G+R+S   A  P+ + + +   +  
Sbjct: 579 PIDT---YKRDIDEFCGTEL-RHDWESLRTSITTHGLRHSTLSAQMPSESSSVVSNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVV---------NSFLVNELKQRDLWDEAMISDLKYHDGSI- 831
           I+P    + VK +  G    +         N  L+ ++K  D + + + +  K+ D +I 
Sbjct: 635 IEPPRAYMSVKKSKKGPLKQIVPQYGSLKNNYTLLWDMKDNDGYIKVVAAMQKFFDQAIS 694

Query: 832 GNIERIPDD 840
           GN    P++
Sbjct: 695 GNWSYNPEN 703


>gi|329947188|ref|ZP_08294512.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525700|gb|EGF52726.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 718

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 194/655 (29%), Positives = 295/655 (45%), Gaps = 75/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F FE +LG    Y  Y L   +G R    + F  RV M  L L + + E+ A++  
Sbjct: 97  YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADGD-EQLALDLI 153

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+  
Sbjct: 154 DEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 214 LLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA- 521
           LD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YG  F    
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSP---YDVERVYGMPFADVN 330

Query: 522 -YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D G IK  +KI+A   ++ +  + FE+G+P++ F+D  N  +P +  G V 
Sbjct: 331 VTEKYHEMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVV 387

Query: 581 SSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI        LN       V     CNLGS+N+         D    A TIRTA
Sbjct: 388 MSNLCSEILQVSEPSRLNEDLTFAHVGKDISCNLGSLNIA-----KTMDSPDFARTIRTA 442

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           VR L  V D  +  ++    + NH   AIGLG M     L    I Y S E ++  +   
Sbjct: 443 VRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYF 502

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741
             + F A++AS E+A ERG ++  F+ S +  G F       D + +   V++  A +  
Sbjct: 503 ACVLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSV 562

Query: 742 ---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797
              +R  W EL  +VK  G+ N N  A+ PT +I+ I   + SI P    + + K    G
Sbjct: 563 HVPTREDWAELAAKVKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIG 622

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ N+                       N+E   D        A+EI P  +I
Sbjct: 623 RVYYPAPFMTND-----------------------NLEYYQD--------AYEIGPEKII 651

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A  +
Sbjct: 652 DTYAAATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQAALI 706


>gi|120598754|ref|YP_963328.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           W3-18-1]
 gi|120558847|gb|ABM24774.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. W3-18-1]
          Length = 762

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 207/783 (26%), Positives = 342/783 (43%), Gaps = 95/783 (12%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   YDG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++               E   LY ++  + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFG----------QFEPPALY-DHVTKLVELGKYDMHILQDYTREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D + +   EFE  Y  YE+ +   +    + I AV L+  M+     TG  +I   D CN
Sbjct: 366 DAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  +  SNLC EI L        +  + E A+C L ++NL A       + +
Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKELSELE 479

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+   A
Sbjct: 480 RLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMRYSDGSA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
             +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   
Sbjct: 537 NNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYK-----RDLDKIC 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G 
Sbjct: 592 NEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQ 651

Query: 799 F-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              VV  F   +     LW       +  +DG                           +
Sbjct: 652 LKQVVPDFDTLKDNYELLW------KMPSNDG--------------------------YL 679

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRS 907
           +     QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R 
Sbjct: 680 QLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRD 736

Query: 908 ATS 910
             S
Sbjct: 737 GAS 739


>gi|293392276|ref|ZP_06636610.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952810|gb|EFE02929.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 756

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 203/793 (25%), Positives = 338/793 (42%), Gaps = 89/793 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P+   H +      +Y    +++ 
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYGH-FDPPRLYDHVKKLVRMGKYDPSLLDDY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            +     + M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 124 TREEW--DEMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +     +FE  Y  YE   +  +    R + AV L+  ++    
Sbjct: 352 DITLFSPSDVPGLYEAFFADQDKFEQLYVQYELDPNIRK----RTVKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+C L + 
Sbjct: 408 STGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAF 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +  
Sbjct: 468 NL-----GKLENLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+
Sbjct: 523 YLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDT 582

Query: 726 I--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               + +   + L  N      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 YKKDIDSLTTEPLHYN------WESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V     N  +  + LWD                   IP +  
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGENYELLWD-------------------IPSNDG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
            +H                  QK++DQA S N   D    E     +  + +    A+  
Sbjct: 678 YLHLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSA 908
           GLKT YY  +R  
Sbjct: 725 GLKTLYYQNTRDG 737


>gi|90412218|ref|ZP_01220224.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
 gi|90326942|gb|EAS43327.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
          Length = 753

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 203/793 (25%), Positives = 346/793 (43%), Gaps = 83/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   +    ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I
Sbjct: 4   QLTVTKRDGRKETIELDKIHRVIDWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++     ++ P    H              + +
Sbjct: 64  KAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNLVNK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ +A  L  K  ++ + +    FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 DDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ + 
Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              +LFSP +V  L+D +     EFE  Y  YE+ A    IK    I A+ L+  ++   
Sbjct: 351 QNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDA---SIKK-ESIKAIELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L      N   E  E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A   +   D ++LA      VR LD ++D   + +  A++S    R +G+G++ + 
Sbjct: 467 FNLGA--IDTLDDLEELAD---LTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNVTHQAFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D++         W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKAIDDVCSEEL-HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VK++  G   ++   +    K +D ++  ++ ++  +DG               
Sbjct: 638 PRGFVSVKASKDG---ILKQVVPEYSKYKDNYE--LLWNIGSNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMGL 897
                       ++     QK+IDQ+ S N   D   + +GK  +  + +    A+ +G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSKQANGKVPMKLLLKDLLNAYKLGV 726

Query: 898 KTTYYLRSRSATS 910
           KT YY  +R   S
Sbjct: 727 KTLYYHNTRDGAS 739


>gi|238759172|ref|ZP_04620340.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238702588|gb|EEP95137.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 709

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 201/687 (29%), Positives = 317/687 (46%), Gaps = 73/687 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 62  VEEGYYEKEVLERY-DFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 120

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA+      +  VE    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 121 YEDRVCMVALTLAVGNPTLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 177

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  A+     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 178 IEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 237

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 238 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 297

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 298 NEEMYLFSPYDVEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQVLAEIQFE 355

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS++E           +   CNLG
Sbjct: 356 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSATEYNDDLSYRHIGKDISCNLG 413

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      TI TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 414 SLNI-AH----TMDSPDFGKTIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 468

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF 721
               L    I Y S EA++  +     + +HAI AS +LA ERG+Y   F  S +  G +
Sbjct: 469 LHGYLARERIFYGSEEALDFTNIYFYNVVYHAIRASNQLAMERGSYFKGFDQSTYASGHY 528

Query: 722 PIDSIGL-----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772
               I        A+VR+  A    S +P    W  L++ V   G+ N N  A+ PT +I
Sbjct: 529 FTKYIEQGWQPKTAKVRELFATAGIS-IPNQQDWTALRQSVMEHGIYNQNLQAVPPTGSI 587

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   + SI P                     +++ ++ R    E  I  + Y    + 
Sbjct: 588 SYINHSTSSIHP---------------------IISPIEIRK---EGKIGRVYYPAPYMT 623

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           N     D+L+  H  A++I P  +I++ +   + +DQ  SL L+  D  S + ++     
Sbjct: 624 N-----DNLEYYH-DAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKAQIY 677

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKG 918
           AW  G+KT YY+R R   ++E + ++G
Sbjct: 678 AWKKGIKTIYYIRLRQ-MALEGTEVEG 703


>gi|160875519|ref|YP_001554835.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS195]
 gi|160861041|gb|ABX49575.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS195]
 gi|315267706|gb|ADT94559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS678]
          Length = 762

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 206/782 (26%), Positives = 341/782 (43%), Gaps = 93/782 (11%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   +DG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++     ++ P   TH            + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D +     EFE  Y  YE+ +   +    + I AV L+  M+     TG  +I   D CN
Sbjct: 366 DAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  +  SNLC EI L        +    E A+C L ++NL +       D +
Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSDIE 479

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+   A
Sbjct: 480 PLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            E+   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   
Sbjct: 537 NELTHRTFEAIQFYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDKIC 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VKS+  G 
Sbjct: 592 AEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKDG- 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                     +LKQ       ++ D      S   + ++P +   +              
Sbjct: 651 ----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI--------- 684

Query: 859 SASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908
                QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R  
Sbjct: 685 ----MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDG 737

Query: 909 TS 910
            S
Sbjct: 738 AS 739


>gi|170726651|ref|YP_001760677.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           woodyi ATCC 51908]
 gi|169811998|gb|ACA86582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           woodyi ATCC 51908]
          Length = 762

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 208/794 (26%), Positives = 347/794 (43%), Gaps = 87/794 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+    G     +  ++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   LKVTKRSGEREIIDLDKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++       +P K   H           + +E G
Sbjct: 65  AAADLISPESPDYQFLSARLAIFHLRKKAFGQF--EPPKLYDH---------VVKLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                + +     +L  L   + + RD  F Y  ++ L  +Y +   +     E  Q  +
Sbjct: 114 KYDTHILQDYTREELDILDGYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  ++ +      FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFAKYPQETRLDYIKRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G +PF K       +
Sbjct: 232 DSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ Q  
Sbjct: 292 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQINKLMYQRLIQGG 351

Query: 498 GWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D + +   EF+  Y  YE  AD    K  +++ A  L+  M+    
Sbjct: 352 VISLFSPSDVPGLYDAFFEDQDEFDRLYLQYE--ADDSIRK--KQVKASELFGLMMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  ++   D CN  SP    V  +  SNLC EI L        N  + E A+C L ++
Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLDNVNDPNGEIALCTLSAL 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A    N  + + LA     AVR LDN++D   + +  A+KS+   R +G+G++ F +
Sbjct: 468 NLGA--IKNLAELEPLAD---LAVRALDNLLDYQDYPLIAAQKSSMNRRTLGIGVINFAN 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  +F  + + +GV PID+
Sbjct: 523 YLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPAFHETTYSKGVLPIDT 582

Query: 726 IG-LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               L  + DE        + W+ L++ + T G+RNS   A+ P+ T + I   +  I+P
Sbjct: 583 YKRALDNICDE-----PLHMDWETLRQDIVTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VKS+  G           +LKQ       ++ D + +  S   + ++P++   +
Sbjct: 638 PRGLISVKSSKDG-----------QLKQ-------VVPDFEKYQYSYELLWQMPNNDGYL 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--------AWLMG 896
                              QK++DQA S N   D PS      +  Q        A+ +G
Sbjct: 680 QLVGL-------------MQKFVDQAISANTNYD-PSRFDNQKVPMQVLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATS 910
           +KT YY  +R   S
Sbjct: 726 VKTLYYHNTRDGAS 739


>gi|77360361|ref|YP_339936.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875272|emb|CAI86493.1| ribonucleoside diphosphate reductase 1, alpha subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 760

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 209/795 (26%), Positives = 344/795 (43%), Gaps = 87/795 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  ++AR  +  LR++       +P +   H  + +  +   RY   
Sbjct: 64  KAAADQISKESPDYQYLSARLAVFHLRKKAYGQF--EPPRLFDHVTKMVGDK---RY--- 115

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A LL +   + +L  L   L + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 116 --DAHLLVD-YTEQELDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L   +  ++ R      FY+ +S F     TP +  +G R P  Q SSC L  
Sbjct: 173 YILVAASL-FADYPRDTRIAYIKRFYDAISLFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+HI        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLDNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++     L      AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTVSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G   ++   +    + +D ++  ++ D+  +DG             
Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDNYE--LLWDIPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR---QAWLM 895
                         ++     QK+IDQ+ S N   D    E     +  + +    A+ +
Sbjct: 678 -------------YLQLVGIMQKFIDQSISANTNYDPGKFEGGRVPMKVLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATS 910
           G+KT YY  +R   S
Sbjct: 725 GVKTLYYHNTRDGAS 739


>gi|260913957|ref|ZP_05920431.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632044|gb|EEX50221.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 756

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 204/790 (25%), Positives = 339/790 (42%), Gaps = 87/790 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG L   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGHLEPIDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI KE P+Y  + AR  +  LR++             H +   LY E+  + +  G
Sbjct: 65  AAADLISKESPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-EHVKKLVRMG 113

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A LL +   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 114 KYDASLLTDYCRE-EWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEAESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           A  TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 ADITLFSPSDVPGLYEAFFADQTKFEELYLKYEQDPTIRK----RAVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNL-----GKLENLDELESLADLAVRALDALLDYQDYPVRAAKRSSLGRRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + +G+ PID
Sbjct: 522 YYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYAKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +   +  ++      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 TYKKDIDTLTQEPLH----YDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
              ++ VK++  G    VV  +         LW+                   +P++   
Sbjct: 638 PRGHVSVKASKDGILKQVVPEYETLGENYELLWE-------------------LPNNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
           +H                  QK++DQA S N   D       +   K+L      A+  G
Sbjct: 679 LHLVGI-------------MQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYG 725

Query: 897 LKTTYYLRSR 906
           LKT YY  +R
Sbjct: 726 LKTLYYQNTR 735


>gi|254471481|ref|ZP_05084883.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
 gi|211959627|gb|EEA94825.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
          Length = 716

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 193/661 (29%), Positives = 311/661 (47%), Gaps = 74/661 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           YER F F  +LG    Y  Y L   +G R    + +  RV M  LAL   + E  A+   
Sbjct: 95  YERKFRFPTFLGAFKFYTSYALKTFDGKR--YLERYEDRVVMTALALSRGD-EDLAMRMM 151

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N+G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 152 DEIISNRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIGRSINSALQLSKRGGGVAL 211

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I G   +S GV P +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 212 LLTNLREAGAPIKGVENQSSGVGPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILSF 271

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   QN    LFSP    D+  +YG  F EIA
Sbjct: 272 LDTKRENADEKIRIKTLSLGVVIPDITFQLAKQNEEMYLFSP---HDVEKVYGIPFSEIA 328

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D  +I+  +K+ A   ++ +  + FE+G+P+I F+D  N  +P    G ++
Sbjct: 329 VTEKYREMVDNPKIRK-KKMRAREFFQLLAEIQFESGYPYILFEDTANAVNPV--AGRIN 385

Query: 581 SSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI  +N +S                CNLGS+N+         D   L ST+ TA
Sbjct: 386 MSNLCSEILQVNEASTFKDDLSYAHLGSDISCNLGSLNIA-----RAMDGGDLGSTVETA 440

Query: 629 VRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V +++   ++   ++ N    AIGLG M     L    I Y SPEA++  +   
Sbjct: 441 IRALTAVSEMSAIVSVPSVRRGNDESHAIGLGQMNLHGFLARELIHYGSPEAIDFTNIYF 500

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAM 738
             + +H + AS  +A+ERG ++  F+ S +  G F         +     +  + ++  +
Sbjct: 501 CIVLYHCLRASNAMARERGVSFKGFEDSQYASGAFFDKYVEKDWLPDTERVVALFEKFGI 560

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +R  W  LK  V T G+ N N  A+ PT +I+ I   + SI P              
Sbjct: 561 HIPTRAEWVALKDAVMTDGLLNRNLQAVPPTGSISYINNSTSSIHP-------------- 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R    E  I  + Y    + N     D+L+  +  A+EI P  LI+
Sbjct: 607 -------IVSKIEIRK---EGKIGRVYYPAPFMNN-----DNLE-YYRDAYEIGPEALID 650

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++
Sbjct: 651 TYAAATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWKKGIKTIYYVRLRQ-MALEGTEVQ 709

Query: 918 G 918
           G
Sbjct: 710 G 710


>gi|127512874|ref|YP_001094071.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           loihica PV-4]
 gi|126638169|gb|ABO23812.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella loihica PV-4]
          Length = 762

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 209/779 (26%), Positives = 340/779 (43%), Gaps = 89/779 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++  A  GL +VS   V   ++   YDG+    +   +I ++  LI  E P+Y  +
Sbjct: 21  KIHRVITWAAKGLNNVSVSEVELRSHLQFYDGIPTEAIHETIIKAAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +AR  +  LR++               E   LY ++  + +E G     +       +L 
Sbjct: 81  SARLAIFHLRKKAFG----------QFEPPSLY-DHVVKLVELGKYDTHILNDYSREELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            L + + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L      +E 
Sbjct: 130 TLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACL-FANYPRET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+  S+F     TP +  SG R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ Q    TLFSP +V  L+D
Sbjct: 307 PMWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIQGGMITLFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE+     E    ++I AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQAEFERLYVKYEQD----ESIRKKQIKAVELFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  V  SNLC EI L        +    E A+C L ++NL A         D+
Sbjct: 423 HSPFDAKVAPVRQSNLCLEIALPTKPLNNIDDPDGEIALCTLSALNLGA-----IKKLDE 477

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L S    AVR LD+++D   + I  A K +   R +G+G++ F + L    + Y+   A 
Sbjct: 478 LESLADLAVRALDSLLDYQDYPIVSAHKGSMNRRTLGIGVINFANYLAKEGVRYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDE-LAM 738
            I  ++ E I ++ + AS+ LA+E+GA  +F  + + +G+ PID+    L ++ DE L M
Sbjct: 538 GITHKTFEAIQYYLLKASMNLAKEQGACPAFHETNYAKGILPIDTYKRDLDKICDEPLHM 597

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P    + VK++  G 
Sbjct: 598 D------WETLRGEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDG- 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                     +LKQ       ++ D + +  S   + ++P +   +              
Sbjct: 651 ----------QLKQ-------VVPDFEKYQYSYELLWQMPGNEGYLQLVGL--------- 684

Query: 859 SASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSRSATS 910
                QK++DQ+ S N   D    P  K  +  + +    A+  G+KT YY  +R   S
Sbjct: 685 ----MQKFVDQSISANTNYDPSRFPGAKVPMQVLLKDLLTAYKYGVKTLYYHNTRDGAS 739


>gi|52425047|ref|YP_088184.1| ribonucleotide-diphosphate reductase subunit alpha [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307099|gb|AAU37599.1| NrdA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 765

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 189/697 (27%), Positives = 308/697 (44%), Gaps = 54/697 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG +   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 14  LMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 73

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR+           KA  H      P     ++++ 
Sbjct: 74  AAADLISKDAPDYQYLAARLAIFHLRK-----------KAYGH----FDPPRLYEHVKKL 118

Query: 264 VKARLLHESMM-DF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           V+     ES++ DF   +   + N L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 119 VRLGKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 178

Query: 318 QAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L  K   + +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 179 QFLYILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 236

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I        G IPF K    
Sbjct: 237 IECDDSLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQT 296

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   Y   WH++VE  + L+ N G +  R   M+    I     +R+
Sbjct: 297 AVKSCSQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRL 356

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++
Sbjct: 357 IKGGDITLFSPSDVPGLYEAFFADQAKFEELYVKYEQDPTIRK----RTVKAVDLFSLLM 412

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  ++   D CN  SP    V  V  SNLC EI L        N    E A+C 
Sbjct: 413 QERASTGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCT 472

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL         D D+L +    AVR LD ++D   + +  AK+S+   RA+G+G++
Sbjct: 473 LSAFNL-----GKIDDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVI 527

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E I ++ + AS+ LA+E GA   F  + + +G+ 
Sbjct: 528 NYAYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGIL 587

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+     +  D L  +      W++L+  +   G+RNS   A+ P+ T + I   +  
Sbjct: 588 PIDT---YKKDVDNLT-SEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNG 643

Query: 782 IDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
           I+P   ++ VK++  G    VV  +     K   LWD
Sbjct: 644 IEPPRGHISVKASKDGILKQVVPDYENLSDKYELLWD 680


>gi|126650013|ref|ZP_01722246.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126593185|gb|EAZ87147.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 697

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 190/700 (27%), Positives = 327/700 (46%), Gaps = 97/700 (13%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295
           RY  E V  RL +   ++  + YL ++  YE+DF               A++Y       
Sbjct: 32  RYFLEYVNVRLRYFIDIEEKIRYLVDEGYYEKDFIDMYEMDFIKMLYKKAYDYNFRFPSF 91

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +     YD Y +   +G  I E  +   + +A+ LA   T   KR+VE   ++ ++    
Sbjct: 92  MSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAKRSVE--AMMEAYQ--P 147

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +   +L SCF  ++ D +  I   +     L++  GG+G + T +R LG 
Sbjct: 148 ATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GVIP  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD
Sbjct: 208 PIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADD 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQAD 530
           + R   ++T   IP +F   + ++    LFSP    D+  +YGK   EI+  E Y    D
Sbjct: 268 KIRLATLSTGIIIPSIFFDLMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLD 324

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             +I+  ++++A  L+ ++    FE+G+P+  F D  N   P +++G V  SNLCTEI  
Sbjct: 325 NPKIRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMSNLCTEIL- 383

Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               +ET+V               CNLGSI++ A    N F+     + I TA+ +L NV
Sbjct: 384 --QVQETSVITDQDQPNEYGLDVSCNLGSIDIHAASKVNDFE-----TLIDTAMHLLTNV 436

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             +     +    K+N    ++GLG M     L    I Y S ++++  D  ME +++++
Sbjct: 437 SQMTYIKNVPSVAKANRLMHSVGLGCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYS 496

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WD 747
           + +S+E+A+E+   +  F+ S +  G +    +    E      +     +P      W+
Sbjct: 497 LKSSMEMAKEKAETFYRFEDSDYASGSYFDQYVNKNEEELSSAVLKALGNIPIITNKMWE 556

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ +S  +AIAPT +I+ I   + SI P  + + V                
Sbjct: 557 LLKEDVMEYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEV---------------- 600

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                RD  D   I  + +          + ++   ++  A+++DP  LI+  +  QK +
Sbjct: 601 -----RDYADSRTIYPMPH----------LTNENSHLYVEAYDVDPYDLIDLYAASQKHV 645

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ  S+ LY+ D  + ++L  +Y  AW+ G+K+ YY+R R
Sbjct: 646 DQGISMTLYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685


>gi|219883064|ref|YP_002478228.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
 gi|219862070|gb|ACL42411.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 726

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 189/653 (28%), Positives = 292/653 (44%), Gaps = 79/653 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+GLA  +    ++ V   
Sbjct: 103 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVTMVALGLAAGDKALAEKLV--- 159

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG  +  +L SCFL  + D++  I  A+     L+K  GG+  
Sbjct: 160 DEIIDGRFQPATPTFLNSGKAQRGELVSCFLLRIEDNMESISRAINSALQLSKRGGGVAF 219

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 220 ALTNVRETGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 279

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   ++    LFSP +V  ++ +   +  +  
Sbjct: 280 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKDEDMYLFSPYDVEKVYGMPFSDINVT- 338

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D   IK   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G +  S
Sbjct: 339 EKYYEMVDDARIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GKIIMS 395

Query: 583 NLCTEITLNSSSEET---------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NLC+EI L  S+  T                 CNLGS+N+         D   L +T+  
Sbjct: 396 NLCSEI-LQVSTPTTYNENLNYEVDGIGKDISCNLGSMNIA-----KAMDGGDLGATVEI 449

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  N   +E   + N    AIGLG M     L   H+ Y SPE+++   + 
Sbjct: 450 AIRALTAVSDQSNITAVESVARGNRMSHAIGLGQMNLHGFLAREHVYYGSPESIDFFGKY 509

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDE 735
           M  ++FHAI AS  +A+ERG  +  F+ S +  G F          P    G   E+  +
Sbjct: 510 MAAVAFHAIRASNLIAKERGVTFDGFERSKYASGEFFDKYVTRSWLPTTERG--QELFAK 567

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
             +   +   W+ELK  V   G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 568 FGITLPTIADWEELKASVMEHGIYNQNLQAVPPTGSISYINNSTASIHPIAAKIEIRKEG 627

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       +L NE                       N+E   D        A+EI   
Sbjct: 628 KIGRTYFPAPYLTNE-----------------------NLEYYQD--------AYEIGYE 656

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +++  +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 657 KIVDMYAAATEHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLR 709


>gi|56692701|ref|YP_164159.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
 gi|42517413|gb|AAS18079.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
          Length = 572

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 166/587 (28%), Positives = 267/587 (45%), Gaps = 97/587 (16%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A + Y+   +  F  S+P L NSG     +S CFL  VPD ++G+     E   L+   G
Sbjct: 46  ASKLYSYSCAGWFGYSSPVL-NSGAGGLPIS-CFLMYVPDSIHGLISHTAELRWLSVLGG 103

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+   W  VRG        + KS G IPF+   +    A  QG  R+G+  AY+   H D
Sbjct: 104 GVAGHWDAVRG-------PSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPD 156

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+             
Sbjct: 157 IIEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTS----------- 205

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHV 576
                           K  + + A  LW ++L   F TG P++ F D  N  +    +  
Sbjct: 206 ----------------KTVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTK 249

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G+ +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR+LDNV
Sbjct: 250 GLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVRMLDNV 303

Query: 636 ID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           ++        ++ HT      ++   R++G+G MG+   L    IP+    A  + DE  
Sbjct: 304 MEDFISRAPTLSAHTANAVAGAS-GERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIF 362

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
             I   A+SAS +LA E+G               P D +G                    
Sbjct: 363 GAIKAAALSASKKLAAEKGE--------------PPDLVG-------------------- 388

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                    G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N +L 
Sbjct: 389 --------YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLE 440

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ RQ+ +
Sbjct: 441 RDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHL 500

Query: 868 DQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            Q QS+NL+    + K KL  ++R AW +  K  YYLR+++  +  K
Sbjct: 501 CQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKANRTSRK 547


>gi|93005950|ref|YP_580387.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           cryohalolentis K5]
 gi|92393628|gb|ABE74903.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter cryohalolentis K5]
          Length = 758

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 183/676 (27%), Positives = 301/676 (44%), Gaps = 51/676 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+++   DG L      ++  ++E A  GL +VS   V  +++   Y+G+   D+   +I
Sbjct: 6   KIQVTKRDGRLEPIELDKIHKVIEWAAHGLDNVSVSQVELKSHIQFYEGIKTRDIHETII 65

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKK--PQKATHHEMQCLYPEYFCRYI 260
            S+  LI E  P+Y  + AR  +  LR+      Y K  P     H  +      + ++I
Sbjct: 66  KSAADLISEDTPDYQYLAARLAIFHLRK----IAYNKFTPPHLYDHVKKLTDAGKYDQHI 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
                  L   S  +FD   L   L + RD    Y  ++ +  +Y +   ++ +  E PQ
Sbjct: 122 -------LADYSRAEFD--ELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQ 172

Query: 319 AFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
             +M V M L    +++E+      FY+  S F     TP +  SG R P  Q SSC L 
Sbjct: 173 FLYMLVGMCLFSRYEKSERMNYVKRFYDATSEFKISLPTPIM--SGVRTPSRQFSSCVLI 230

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I               G+G +   +R LG+ I G   +  G IPF K+    
Sbjct: 231 ECGDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTA 290

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ 
Sbjct: 291 VKCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLI 350

Query: 495 QNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQ-ADRGEIKVFRKISAVALWRKML 550
           +    +LFSP +   L+D + ++   FE  Y  YE   A R      R+I A  L+  M+
Sbjct: 351 KGQDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPAIRS-----RQIPAADLFSLMM 405

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C 
Sbjct: 406 QERASTGRIYIQNVDHCNTHSPFDATVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCT 465

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L ++NL      N  D ++ A  I   VR LD ++D   + ++ A+  +   R +G+G++
Sbjct: 466 LSAVNLGK--VENVSDIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVI 520

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ 
Sbjct: 521 NYAYYLAKNGVRYSDDSAIGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGIL 580

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+     +  D++       L W+ L+  +   G+RNS   A+ P+ T + I   +  
Sbjct: 581 PIDT---YKKDLDKIC-QEPLHLDWETLRGEITEHGLRNSTLTALMPSETSSQIANATNG 636

Query: 782 IDPSYQNLYVKSNMSG 797
           I+P    + +K++  G
Sbjct: 637 IEPPRGLVSIKASKDG 652


>gi|332974188|gb|EGK11122.1| ribonucleotide-diphosphate reductase alpha subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 758

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 199/792 (25%), Positives = 346/792 (43%), Gaps = 83/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+   +I 
Sbjct: 7   LKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETIIK 66

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + AR  +  LR+ +    ++ P    H        +Y     +E 
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRK-IAYNQFEPPHLFDHVTKLTAAGKY-----DEH 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           +   L   S  +FD   L   + + RD    Y   + +  +Y +   +  +  E PQ  +
Sbjct: 121 I---LQDYSREEFD--ELNEYIDHWRDMTLAYAAAEQMAGKYLVQDRVTKTVYESPQFLY 175

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           M V M L  +  ++E+      FY+  +S  F  S PT   +G R P  Q SSC L    
Sbjct: 176 MLVGMCLFASYDKSERLHYVKRFYD--ASSQFKISLPTPIMAGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRTLYTRLIKGQ 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              LFSP +V  L++ +     +FE  Y  YE+  +  +    R + A  L+  ++    
Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEELYTEYEQDENIRK----RHVPAADLFSLLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L ++
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCMEIALPTKPLDNINDEKGEIALCTLSAV 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL           D +       VR LD ++D   + ++ A+  +   R +G+G++ +  
Sbjct: 470 NL-----GEVQSLDDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAY 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PID+
Sbjct: 525 YLAKNGVKYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDT 584

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
               A++ D++  N   +L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 585 YK--ADL-DKIC-NEPLQLDWEALRSEIKEHGLRNSTLSALMPSETSSQIANATNGIEPP 640

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + VK++  G   ++   + + L  +D ++  ++  +  +DG                
Sbjct: 641 RGLVSVKASKDG---ILKQVVPDILNLKDNYE--LLWQMPNNDG---------------- 679

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLK 898
                      ++  +  QK+IDQ+ S N   D    E +   +  + +    A+ +G+K
Sbjct: 680 ----------YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVK 729

Query: 899 TTYYLRSRSATS 910
           T YY  +R   +
Sbjct: 730 TLYYHNTRDGAN 741


>gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           oneidensis MR-1]
 gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           oneidensis MR-1]
          Length = 762

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 205/791 (25%), Positives = 338/791 (42%), Gaps = 93/791 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++  A  GL++VS   V   T+   +DG+    +   +I S+  LI  E P+Y  +
Sbjct: 21  KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + +E G     + +     +L 
Sbjct: 81  AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L      KE 
Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ +    +LFSP +V  L+D
Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESISLFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE+ +   +    + + AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L        +  + E A+C L ++NL         D  +
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL-----GTITDLAE 477

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    + Y+   A 
Sbjct: 478 LEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
            +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   +
Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYK-----RDLDKICS 592

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 593 EPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652

Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             VV  F   +     LW   M S+  Y                              ++
Sbjct: 653 KQVVPDFDTLKNNYELLWQ--MPSNEGY------------------------------LQ 680

Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909
                QK++DQA S N   D     G+K+       D +   A+ +G+KT YY  +R   
Sbjct: 681 LVGIMQKFVDQAISANTNYDPARFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738

Query: 910 SVEKSTLKGVD 920
           S +   +  ++
Sbjct: 739 SDQHDDITNIE 749


>gi|332141552|ref|YP_004427290.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551574|gb|AEA98292.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 773

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 206/792 (26%), Positives = 340/792 (42%), Gaps = 83/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G   S + +++  +V  A  GL +VS   V  +     YDG++ S++   LI 
Sbjct: 5   LFVTKRNGEKESIDLEKIHKVVTWAAKGLNNVSVSQVEIKAQIQFYDGINTSEIHETLIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  + P+Y  + AR  +  LR++               E   L+ E+  + ++ G
Sbjct: 65  SAADLISTDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALF-EHVGKMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYTPEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L     +K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FANYDKATRMDYIRRFYDAASTFKLSLPTPIM--AGVRTPTRQFSSCVLIET 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++
Sbjct: 291 SCSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKD 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              +LFSP +V  L+D +  + E   E Y +  +   I+  ++I A+ L+   +     T
Sbjct: 351 GYISLFSPSDVPGLYDAFFADQEKFEELYVKYENDDSIRK-KQIKAMELFSLFMQERAST 409

Query: 557 GHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607
           G  ++   D CN  SP    V  V  SNLC EI L        N  + E A+C L + NL
Sbjct: 410 GRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  + ++F  ++LA     AVR LDN++D   + +  A  +    R +G+G++ F   L
Sbjct: 470 GAIKSVDEF--EELAD---LAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PIDS  
Sbjct: 525 AKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYK 584

Query: 728 LLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                +D +   N      WD L++ +K  G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 -----KDLDSVCNEPLHYDWDALREEIKAHGLRNSTLSALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + +KS+  G   V+   +      RD ++  ++ D+  +DG                 
Sbjct: 640 GFISIKSSKDG---VLKQVVPEYETLRDQYE--LLWDIPSNDG----------------- 677

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-----IYRQAWLMGLK 898
                     ++     QK+IDQ  S N   D PS   G K+            + +G+K
Sbjct: 678 ---------YLQLVGIMQKFIDQTISANTNYD-PSRYEGNKVPMKLLLKDLLTTYKLGVK 727

Query: 899 TTYYLRSRSATS 910
           T YY  +R   S
Sbjct: 728 TLYYHNTRDGAS 739


>gi|330858747|ref|YP_004415122.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
 gi|327397681|gb|AEA73183.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
          Length = 754

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGTGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G K  YY  +R  +  +
Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737


>gi|269469190|gb|EEZ80729.1| ribonucleotide reductase, alpha subunit [uncultured SUP05 cluster
           bacterium]
          Length = 758

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 206/796 (25%), Positives = 346/796 (43%), Gaps = 95/796 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     + +++  +V  A   L+ VS   V        +DG+   ++   +I 
Sbjct: 5   IQVTKRNGKKEPVDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEEIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  ++AR  +  LR++   +    P          L+ E+  ++ + G
Sbjct: 65  SAADLISTETPDYQYLSARLAIFHLRKKAFKSFTPPP----------LF-EHIKKFTDLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           +  + + +     ++  L   + + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 114 IYDKDILDKYSKKEIKELDKYIDHWRDMKFSYAAVKQLEGKYLVQNRVTGEIYESPQLLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V M L  +E E + R      FY+ +S F     TP +  +G R P  Q SSC L   
Sbjct: 174 VLVGMCL-FQEYEAKARMDIVKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIEA 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL  I  A            G+G +   +R +G+ I G      G IPF K  +    
Sbjct: 231 DDDLDSISAAAGAIVKYVSQRAGIGINGGRIRAIGSPIRGGEATHTGCIPFYKHFHTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++V+E L L+ NTG D  R   ++       L  +R  ++
Sbjct: 291 SCSQGGVRGGAATLFYPFWHLEVKELLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLED 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTM 552
              TLFSP +VS L+D +    KEF+  YE YE+  + R E      I A  L+ K +  
Sbjct: 351 GDITLFSPHDVSGLYDSFFEDQKEFKRLYEQYEQDDSIRKET-----IKARELFAKFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN           V  SNLC EITL           + E A+C L 
Sbjct: 406 RANTGRIYLQNVDHCNTHGAFDAKQAPVRQSNLCMEITLPTKPLYSVQDENGEVALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A  +      D+L       VR LD+++D   + I+ A+ ++   R +G+G+   
Sbjct: 466 AVNLGALDS-----LDELEDITEIIVRALDSLLDYQDYPIKAAELASMNRRTLGIGVTNL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   +  Y+      +  ++ E + ++A+ AS +LA E G+   F  + + +G+ P+
Sbjct: 521 AYYLAKNNAKYSDGSGNPLIHKTFEALQYYALKASNKLANELGSCPLFNETQYSKGIMPV 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +V D    N    L WD L+K +   G+RNS   A+ P  + + I   +  I+
Sbjct: 581 DSYK--KDVDD--FCNCDLELDWDALRKNIVATGLRNSTLTALMPCESSSQISNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K +  G    +V  +   + K   LW      D+K +DG             
Sbjct: 637 PPRGFVSIKQSKDGILKQIVPEYEALKNKYELLW------DIKNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK-------LDFIYRQA 892
                         ++  +  QK++DQ+ S N + D PS   G K       +D +  +A
Sbjct: 678 -------------YLQLCAIMQKFVDQSISTNTHYD-PSQFEGNKVPMKLFLMDLL--KA 721

Query: 893 WLMGLKTTYYLRSRSA 908
           +  G+KT YY  +R  
Sbjct: 722 YKYGIKTLYYHTTRDG 737


>gi|326800311|ref|YP_004318130.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326551075|gb|ADZ79460.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 705

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 172/599 (28%), Positives = 282/599 (47%), Gaps = 70/599 (11%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           RA+E+  +L +  +  +TPT  N+G  R  +L SCFL  + D L GI  A+ E   L+  
Sbjct: 141 RALEYAEILINQEYQPATPTFLNAGKLRSGELVSCFLDEIGDSLSGISYAIDEAMKLSSI 200

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + VR  G  I G  G+S GV+P +K+  DT    NQ G+R GA   YL  +H
Sbjct: 201 GGGVSFNISKVRARGEAIKGVEGRSSGVLPVMKIMEDTFSYANQLGQRPGAGAVYLNVFH 260

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFLD +K   D++ R   ++    IPD FM+    +    LF P  V   +  Y  
Sbjct: 261 SDIEEFLDCKKINVDEKSRIKSLSIGVIIPDKFMQIAEHDEVCYLFYPHTVYQEYGQYLD 320

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E ++  + Y+      ++K  RKI+A  L  K+     E+G+P++ FKD  N       +
Sbjct: 321 EMDMT-KMYDELVSNPKVKK-RKINARHLLIKVAQTQKESGYPYLFFKDNANRGHALNGI 378

Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624
           G V  SNLCTEI        +N   EE  +     CNLGS+N+     N      ++   
Sbjct: 379 GSVKFSNLCTEIMQLSEVSDINPYHEEDTIRYGISCNLGSLNIATTMENR-----RIKEV 433

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++TA+R L  V D+ +   +   +K+N    ++GLG M     L    I Y S EA++  
Sbjct: 434 VKTAMRSLTVVSDMTDIKMVPTIQKANRELHSVGLGAMNLHGFLAKNFITYESKEALDFC 493

Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----------FPI-DSIGLLAE 731
           +     ++F+++  S+E+A+ERG  +  F+ S +  G           FP+ D +  L E
Sbjct: 494 NVFFMMVNFYSLECSMEIAKERGVTFKGFENSDYANGAYFDKYINNDYFPVSDRVKELFE 553

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    R  W++LK+ V   G+ ++  MAIAP  + + I   + S+ P       
Sbjct: 554 -----GITIPDRAAWEKLKQDVMQHGVYHAYRMAIAPNQSTSYIMNATASVMP------- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                         +V+ ++ R+  D      + Y          + +D    + +A+++
Sbjct: 602 --------------VVDTIEVREYGDSTTYYPMPY----------LNNDNYFYYKSAYDM 637

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           D   ++   S  Q+ +DQ  S  L+ + + + + L   Y  A  MGLK+ YY R+R A+
Sbjct: 638 DQNNVLRLISVIQRHVDQGISTILHTNSKDTTRDLAKYYIYAHKMGLKSLYYTRTRKAS 696


>gi|220905096|ref|YP_002480408.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869395|gb|ACL49730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 781

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 169/624 (27%), Positives = 287/624 (45%), Gaps = 89/624 (14%)

Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHF 351
           +L  RY   +++G  IE P+  F RVA  +A +E           + A +FY+L++S+ F
Sbjct: 20  VLQKRYLRKNLDGKIIEAPRDLFWRVAAAIAAQEENYKNSSRTPNQLARDFYDLMTSWKF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 80  LPNSPTLMNAGTELGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKD 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 140 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEKEGE 199

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V  +  + L SP+                          
Sbjct: 200 ----FNNFNLSVGLTESFMQAVENDEQYDLVSPNN------------------------- 230

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V +++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L 
Sbjct: 231 GE--VMKRLPARDVFDLLVRKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 288

Query: 592 SSSEETAVCNLGSINLLA-HFANNQ--------FDYDKLASTIRTAVRVLDNVIDINCHT 642
                   CNLGSINL   H   ++         D+D+L   +  +VR LDNVID +   
Sbjct: 289 PFE----ACNLGSINLSCFHVPGHENSADPAAGIDWDELRRVVHLSVRFLDNVIDASRFP 344

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++  ++   +R IGLG+MGF   L  L +PY S + +++ +  M F+      AS ELA
Sbjct: 345 LDRIGETVRKNRKIGLGVMGFADLLFQLGVPYDSQQGLDLGERIMAFVQGEGHRASAELA 404

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG + ++  S++                                   R K    RN+ 
Sbjct: 405 LERGPFPAYGSSVF----------------------------------ARKKLGPYRNAT 430

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+  V +N      L+   L+   ++
Sbjct: 431 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEINPHFEAALESGGLFSHELM 490

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
            D     GSI +++ +P  L+K   TA +I P W +   +  Q+  D A S  + L   +
Sbjct: 491 -DAVVAKGSIQDMDYLPAPLRKTFVTAMDIAPQWHLRMQAAFQRHTDNAVSKTVNLSNSA 549

Query: 882 GKK-LDFIYRQAWLMGLKTTYYLR 904
            ++ +  IY  A+  G K     R
Sbjct: 550 TEQDIREIYWLAYQEGCKGVTVYR 573


>gi|68535548|ref|YP_250253.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           jeikeium K411]
 gi|68263147|emb|CAI36635.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           jeikeium K411]
          Length = 720

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 188/666 (28%), Positives = 305/666 (45%), Gaps = 84/666 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+GLA  +TE     V+  
Sbjct: 99  YAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGDTELASNLVD-- 156

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    F  +TPT  N G +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 157 -EIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 215

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + VR  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 216 LLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLSAHHPDILRF 275

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA- 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F    
Sbjct: 276 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADVS 332

Query: 522 -YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E+YE   +   I+   KI+A A ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 333 ITEHYEEMVEDPRIRK-SKINARAFFQTLAEIQFESGYPYIMFEDTVNKANPIE--GRIT 389

Query: 581 SSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S+  E               CNLGS+N+         D +  + TI TA
Sbjct: 390 HSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA-----KAMDSEDFSKTIETA 444

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S EA++  +   
Sbjct: 445 IRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALDFTNAYF 504

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741
             + + A+ AS ++AQERG  + +F+ S +  G F     P +       +R ++  N +
Sbjct: 505 ATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERIR-QIIGNSS 563

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            ++P    W +LK  V+  G+ N N  AI PT +I+ I   + SI P    + ++     
Sbjct: 564 IQVPTAQDWQQLKDDVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIRK---- 619

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                                         +G IG +      + +D  + +  A+EI  
Sbjct: 620 ------------------------------EGKIGRVYYPAPYMTNDNLEYYEDAYEIGY 649

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R  T++ 
Sbjct: 650 EKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRLRQ-TALT 708

Query: 913 KSTLKG 918
            + ++G
Sbjct: 709 GTEVEG 714


>gi|9632790|ref|NP_049845.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|417656|sp|P32282|RIR1_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Protein B1; AltName: Full=Ribonucleotide
           reductase
 gi|5354414|gb|AAD42621.1|AF158101_208 NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|509024|gb|AAA32527.1| ribonucleoside diphosphate reductase [Enterobacteria phage T4]
          Length = 754

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 209/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 YEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLY--G 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+K  YY  +R  +  +
Sbjct: 718 WYYGIKNFYYHNTRDGSGTD 737


>gi|85711600|ref|ZP_01042657.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
 gi|85694460|gb|EAQ32401.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
          Length = 777

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 203/802 (25%), Positives = 340/802 (42%), Gaps = 89/802 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+   +I
Sbjct: 4   QLFVTKRSGQREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR+        +P +   H  + +         E+
Sbjct: 64  KAAADLISEEAPDYQYMAARLAIFHLRKRAYGKF--EPPRLYDHVKKMV--------DEK 113

Query: 263 GVKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
              A LL + S  +FD   +   + + RD  F Y  ++ L ++Y +   + G   E  Q 
Sbjct: 114 RYDAHLLEDFSEQEFD--QMDEIIDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            ++ VA  L     ++ +      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 172 LYILVAACLFANYPKSTRMDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEIENLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D +    +EFE  Y  YE   +  +    ++I A+ L+   +  
Sbjct: 350 DDFITLFSPSDVPGLYDAFFEDQEEFERLYVQYENDENIRK----KRIKAIELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI L        N    E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL      +  D+++LA     AVR LD+++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGK--IESLSDFEELAD---LAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I F+ + AS+ELA+E+G    F  + + QG+ P 
Sbjct: 521 AYYLAKHGVKYSDGSANGLVHRTFEAIQFYLMKASMELAKEKGKCPKFNETTYSQGILPT 580

Query: 724 DSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           D+    L A   + L       L W++L+K ++  GMRNS   A+ P+ T + I   +  
Sbjct: 581 DTYKKDLDAFCSEPL------HLDWEQLRKDIQEHGMRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK++  G                    + ++ D +    +   + +IPD+ 
Sbjct: 635 IEPPRGFVSVKASKDG------------------VTKQVVPDYENLKNNYELLWQIPDNK 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWL 894
             +                   QK++DQ  S N   D           +Q       A+ 
Sbjct: 677 GYLQLVGI-------------MQKFVDQTISANTNYDPGKFNGAKVPMKQLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTL 916
           MG+KT YY  +R   +  +S +
Sbjct: 724 MGVKTLYYHNTRDGAADNQSDI 745


>gi|56460471|ref|YP_155752.1| ribonucleotide-diphosphate reductase subunit alpha [Idiomarina
           loihiensis L2TR]
 gi|56179481|gb|AAV82203.1| Ribonucleotide reductase, alpha subunit [Idiomarina loihiensis
           L2TR]
          Length = 776

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 208/806 (25%), Positives = 343/806 (42%), Gaps = 87/806 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+   +I
Sbjct: 4   QLYVTKRSGEREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR+      ++ P+   + +++ +  E+  RY E 
Sbjct: 64  KAAADLISEEAPDYQYMAARLAIFHLRKRAYGK-FEPPR--LYDQVKKMVAEH--RYDEH 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
                 L E   + +   +   L + RD  F Y  ++ L ++Y +   + G   E  Q  
Sbjct: 119 ------LLEDYTEAEFDQMDEILDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L     ++ +      FY+  S F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILVAACLFANYPKSTRMDYVKRFYDAASEFKISLPTPIM--SGVRTPTRQFSSCVLIEA 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++          +R+ ++
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRTMYQRLIKD 350

Query: 497 AGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + +   EFE  Y  YE+     E    ++I A+ L+   +   
Sbjct: 351 DYITLFSPSDVPGLYDAFFEDQDEFERLYLQYEQD----ESIRKKRIKAIELFGLFMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  ++   D CN  SP    V  +  SNLC EI L        N    E A+C L +
Sbjct: 407 ASTGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL      N  +++ LA     AVR LD+++D   + +  A  +    R +G+G++ F 
Sbjct: 467 FNLGK--IENLGEFENLAD---LAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS+ LA+ERGA   F  + + QG+ P D
Sbjct: 522 YYLAKHGVKYSDGSANGLVHQTFEAIQYYLMQASMNLAKERGACPKFNETTYSQGIMPTD 581

Query: 725 SIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    L +V DE        L WD+L+  +K  GMRNS   A+ P+ T + I   +  I+
Sbjct: 582 TYKKDLDKVCDE-----PLHLDWDKLRADIKQHGMRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +KS+  G    VV  +   + K   LW                   +IP++  
Sbjct: 637 PPRGFVSIKSSKDGVTKQVVPDYENLKDKYELLW-------------------QIPNN-- 675

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ-------AWLM 895
                         +E     QK++DQ  S N   D    +      +Q       A+ +
Sbjct: 676 -----------KGYLELVGIMQKFVDQTISANTNYDPSKFQAGKVPMKQLLQDLLTAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   +  +S +    G
Sbjct: 725 GVKTLYYHNTRDGAADNQSDIAARKG 750


>gi|170718503|ref|YP_001783715.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 2336]
 gi|168826632|gb|ACA32003.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           somnus 2336]
          Length = 756

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 204/794 (25%), Positives = 338/794 (42%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H E   LY ++  + +  G
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVAASL-FSRYPKETRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L        +  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    ++     L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNLGALENLDE-----LEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L   ++ Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PID
Sbjct: 522 YYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +         +  ++  ++ P    W+ L+K ++  G+RNS   A+ P+ T + I   + 
Sbjct: 582 TY--------KKDIDNLTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPD 839
            I+P   ++ +K++  G    V     N  +  + LWD                   IP 
Sbjct: 634 GIEPPRGHVSIKASKDGILKQVVPDYENLGENYELLWD-------------------IPS 674

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892
           +   +H                  QK+IDQA S N   D    E     +  + +    A
Sbjct: 675 NDGYLHLVGI-------------MQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  GLKT YY  +R
Sbjct: 722 YKYGLKTLYYQNTR 735


>gi|163847312|ref|YP_001635356.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525156|ref|YP_002569627.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           sp. Y-400-fl]
 gi|163668601|gb|ABY34967.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449035|gb|ACM53301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 181/646 (28%), Positives = 302/646 (46%), Gaps = 57/646 (8%)

Query: 300 ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351
           +L  RY L + +G  IE P+  F RVA  +A  +        + E+RA  FY+L++  +F
Sbjct: 18  VLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASAEQVEERAERFYHLMTQGYF 77

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  ++ +R   
Sbjct: 78  EPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFSFSRLRPRN 137

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+  + +T  
Sbjct: 138 DVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFITCKLDT-- 195

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              +  + N +  I D FM+ V +         DE  DL +      +IA  +  +    
Sbjct: 196 --TKITNFNISVAITDAFMRAVER---------DEEYDLINPRTGLGQIASRDGLKHPLT 244

Query: 532 GEIKVFR----KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           GE+ V      ++ A  ++  ++     TG P + F D  N  +P  H+G   ++N C E
Sbjct: 245 GEVLVPAGQPMRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGEYEATNPCGE 304

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
             L +      VCNLGSINL     +    D++ L   +  + R LDNVID N + +E+ 
Sbjct: 305 QPLLAYD----VCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYPLEQI 360

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + +   R IGLG+MG+   L  L IPY S +A+++A + M FI   +  AS +LA+ERG
Sbjct: 361 TQLSQRIRRIGLGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLARERG 420

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  ++ S+W                R + +  R  RL             +RN N   +
Sbjct: 421 PFPEWEYSIWGPDA--------TCARRPDGSRIRPQRL-------------LRNCNVTTV 459

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT TI+ I G S  I+P +   + +         +N   V + K+   + + ++  +  
Sbjct: 460 APTGTISIIAGCSSGIEPLFAIAFWRYQADTRMLDINQDFVAQAKREGWYSDELMERIA- 518

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             G I + E +P  ++++  TA +I P W +   +  Q++ D A S  + +  E +  ++
Sbjct: 519 DTGHIHHPE-VPASVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEATPDQV 577

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK-LNAVPVTD 930
              Y  A+ +G K     R  S  +   ST  G  GK     P +D
Sbjct: 578 REAYELAFRLGCKGITVYRDGSRANQVLST--GSTGKSAEPAPASD 621


>gi|330507668|ref|YP_004384096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
 gi|328928476|gb|AEB68278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
          Length = 676

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 182/639 (28%), Positives = 288/639 (45%), Gaps = 89/639 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EK 335
           +A+DLK   + A      ++L  RY L    G  +E P   F RVA  ++  E+    + 
Sbjct: 103 VADDLKLSVNAA------EVLKKRYLLRDERGDVVETPGEMFGRVADHISKAESKYGGDV 156

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E     F  ++ +  F+ ++PTL NS     QLS+CF+  V D L GIF AL+  A++ +
Sbjct: 157 ESYRSLFLQMMRNLEFLPNSPTLMNSRLELGQLSACFVLPVTDSLPGIFDALKNMALIHQ 216

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G  ++ +R     +  T G + G + F+++ +     + QGG+R+GA    L   
Sbjct: 217 SGGGTGFSFSRLRPKDDVVRATGGVASGPVSFMRIFDTATDVIKQGGRRRGANMGILRVD 276

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF++ ++  G       + N +    D FM++        L +P        L G
Sbjct: 277 HPDIMEFIEAKERPG----FLENFNLSVAATDEFMEKSRGEGEIDLINPR-----TGLAG 327

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
              + A                  + A + WR         G P I F D  N   P   
Sbjct: 328 GRLKAAE--------------LLGLIATSAWR--------GGDPGIIFIDRINAAHPLP- 364

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G + ++N C E  L         CNLGSINL       + D+D+LA  +  AVR LD+V
Sbjct: 365 -GEIEATNPCGEQPLLPYES----CNLGSINLSRLVRKGELDWDRLAELVSLAVRFLDDV 419

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID+N   + + +++  + R IGLG+MGF   L  ++I YASP+AV +A++ M FIS HA 
Sbjct: 420 IDMNRFPLPQIEEATLSRRKIGLGVMGFADMLIQMNISYASPQAVALAEKLMGFISEHAR 479

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-PWDELKKRVK 754
           + S  L +ERG++  F                             +SRL  W        
Sbjct: 480 AQSARLGEERGSFPLFD----------------------------SSRLRGWS------- 504

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK-QR 813
              MRN+    IAPT TI+ I G S  I+P +   +V+  + G   +  S L  ++  +R
Sbjct: 505 --AMRNATVTTIAPTGTISIIAGTSSGIEPLFALAFVRRVLEGARLLEVSPLFEKMAMER 562

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            ++   +  +L +  GS+  I  +P DLK++  TA +I     +   +  QK+ D A S 
Sbjct: 563 GIYTPDLKVELAWR-GSVQEIAGLPQDLKELFRTALDISAQQHVRIQAAFQKYTDNAVSK 621

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            + L  E +   +  +YR A+ +G K     R  S + V
Sbjct: 622 TVNLPAEATVSDVLQVYRLAYDLGCKGVTVFRYGSRSQV 660



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR G V  F   KI+ AI KAF AV  +      R+ + +    E+  +R       
Sbjct: 4   RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAEERFSRT------ 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +E+IQD VE +L+ +G+  + + Y+LYR++R+++R A+ +
Sbjct: 58  --IPGVEEIQDLVERALISAGYADVAKAYILYRQKRTEIREAKRY 100


>gi|258404144|ref|YP_003196886.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfohalobium
           retbaense DSM 5692]
 gi|257796371|gb|ACV67308.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfohalobium retbaense DSM 5692]
          Length = 742

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 293/618 (47%), Gaps = 84/618 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSFHF 351
           +L  RY      G  +E PQ  F RVA  +A  ET        +E  A  FY+L++S  F
Sbjct: 19  VLRKRYVRKGPEGEEMETPQELFWRVAAAIAASETAYEQTPFSQEALARRFYDLMASCRF 78

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 79  FPNSPTLMNAGTELGQLAACFVLPVGDSMEEIFDAIKYAALIHKSGGGTGFSFSRLRAAD 138

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G I FL++ N     V QGG R+GA    L   H D+ EF+ +++  G+
Sbjct: 139 SRVGSTGGVASGPISFLRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFIRVKEREGE 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+RV  +A + L +P    ++  L  +E              
Sbjct: 199 ----LNNFNLSVALTEDFMRRVEADAEYPLIAPQSEKEVGRLRARE-------------- 240

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                        ++  ++   +E+G P I F D  N  +P   +G + ++N C E  L 
Sbjct: 241 -------------VFTLLVQKAWESGDPGIIFLDRINRDNPTPQLGDIEATNPCGEQPLL 287

Query: 592 SSSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL + FA+    + D++ L  ++  AVR LDNVID + + + +   
Sbjct: 288 PYE----ACNLGSINL-SRFADAPAQELDWEGLRESVHLAVRFLDNVIDASVYPLPQITD 342

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MG+   L+ L I Y S +A+ + ++ M+FI   A SAS +LA+ERG +
Sbjct: 343 QVKRNRKIGLGIMGWADLLYQLRIAYDSRQALSLGEKVMDFIQKEARSASKDLARERGPF 402

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            ++  S     VF   ++G                 P+            RN+    IAP
Sbjct: 403 PAYADS-----VFGKQNLG-----------------PY------------RNATTTTIAP 428

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ + G S  I+P +   +V+  M G+  V  N      +++     + ++ ++   
Sbjct: 429 TGTLSILAGCSSGIEPLFALSFVREVMDGERLVETNPIFRQAMEEAGCASQRLLDEVA-R 487

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            G++ ++E +PDD++ +  TA +ID    +   +  QK+ D A S  + L  E + + + 
Sbjct: 488 KGTVRDMELVPDDMRNVFVTAMDIDGEAHLRMQAAFQKYTDNAVSKTVNLPHEATQEDIR 547

Query: 887 FIYRQAWLMGLKTTYYLR 904
            IY  A+  G K     R
Sbjct: 548 HIYWLAYEQGCKGVTVYR 565


>gi|113461339|ref|YP_719408.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 129PT]
 gi|112823382|gb|ABI25471.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Haemophilus somnus 129PT]
          Length = 756

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 204/794 (25%), Positives = 338/794 (42%), Gaps = 95/794 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H E   LY ++  + +  G
Sbjct: 65  AAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVAASL-FSRYPKETRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L        +  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    ++     L      AVR LD ++D   + +  AK+S+   R++G+G++ + 
Sbjct: 467 FNLGALENLDE-----LEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L   ++ Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PID
Sbjct: 522 YYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +         +  ++  ++ P    W+ L+K ++  G+RNS   A+ P+ T + I   + 
Sbjct: 582 TY--------KKDIDNLTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPD 839
            I+P   ++ +K++  G    V     N  +  + LWD                   IP 
Sbjct: 634 GIEPPRGHVSIKASKDGILKQVVPDYENLGENYELLWD-------------------IPS 674

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892
           +   +H                  QK+IDQA S N   D    E     +  + +    A
Sbjct: 675 NDGYLHLVGI-------------MQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  GLKT YY  +R
Sbjct: 722 YKYGLKTLYYQNTR 735


>gi|228861160|ref|YP_002854183.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
 gi|227438834|gb|ACP31146.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
          Length = 754

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPADRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G K  YY  +R  +  +
Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737


>gi|291290451|dbj|BAI83246.1| ribonucleotide reductase A subunit [Enterobacteria phage AR1]
          Length = 754

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENVKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNEGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G K  YY  +R  +  +
Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737


>gi|269217730|ref|ZP_06161584.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269212665|gb|EEZ79005.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 712

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 188/660 (28%), Positives = 304/660 (46%), Gaps = 75/660 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           FD V       Y + F F  +LG    Y  Y L   +G+R +E  +     VA+ LA  +
Sbjct: 82  FDFVKSLYKAAYAKKFRFPTFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMVALTLARGD 141

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENA 391
              +  AV+    + S  F  +TPT  N+G     +L SCFL  + D++  I   +    
Sbjct: 142 ---QDLAVDLMEEIISGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSAL 198

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+  + + +R LGA I     +S GV P +K+  D+    NQ G R+GA   Y
Sbjct: 199 QLSKRGGGVALNLSNLRELGAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGARQGAGAVY 258

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 259 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFSPYDVERVY 318

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  ++ E Y    D   I+   KI+A A ++ +  + FE+G+P+I F+D  N  +
Sbjct: 319 GVPFTEISVS-EKYREMVDDKRIRK-SKINARAFFQTLSEIQFESGYPYIVFEDTVNAAN 376

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P +  G V  SNLC+EI   S + E               CNLGS+N+         D  
Sbjct: 377 PIK--GKVTMSNLCSEILQVSEASEYNPDLSYAHVGKDISCNLGSMNIA-----KAMDSP 429

Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            L  T+ TAVR L  V D+ +  ++   ++ N    +IGLG M     L    + Y S E
Sbjct: 430 DLGKTVETAVRALTAVSDMTDIRSVPSIERGNAMSHSIGLGQMNLHGYLGRERVFYGSEE 489

Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLAEV 732
            ++  +     + FHAI AS+E+A+ERG  ++ F+ S +  G F    +         +V
Sbjct: 490 GLDFTNMYFYTVLFHAIRASMEIARERGERFAGFEDSTYATGEFFDKYVEGAWEPTTPKV 549

Query: 733 RDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R+  A ++  +   W  L++ V+  GM N N  A+ PT +I+ I   + SI P       
Sbjct: 550 RELFANVHIPTSEDWAALREDVRRYGMYNQNLQAVPPTGSISYINHSTSSIHP------- 602

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT 847
                         +V++++ R              +G IG +      + +D  + +  
Sbjct: 603 --------------IVSKIEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQD 635

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI P  +I++ +   + +DQ  SL L Y D  + + ++  Y  AW  G+KT YY+R R
Sbjct: 636 AYEIGPEKIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNRNYIYAWRKGIKTLYYMRIR 695


>gi|228861542|ref|YP_002854563.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
 gi|227438558|gb|ACP30871.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
          Length = 754

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 210/800 (26%), Positives = 342/800 (42%), Gaps = 98/800 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLET 200
           + ++   G   SF+ +++  ++  A  G     + +   E Y+N    + DG++  D++T
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-----TSVDPYELYENIKSYLRDGMTTDDIQT 58

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PE 254
            +I ++   I  +EP+Y  V AR L+  LR+ V      +P+    H   C+      PE
Sbjct: 59  IVIKAAANSISVEEPDYQYVAARCLMFALRKHVYGQY--EPRSFIDHISYCVNAGKYDPE 116

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGS 312
              +Y  E              ++ +L + +K+ERD  F Y G   L ++Y +     G 
Sbjct: 117 LLSKYSAE--------------EITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQ 162

Query: 313 RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             E PQ  FM + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC
Sbjct: 163 IYETPQFAFMTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSC 222

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D L  I  A            G+G +   +R  G+ I     +  GVIPF K  
Sbjct: 223 VVIEAGDSLKSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHF 282

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+
Sbjct: 283 QTAVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMME 342

Query: 492 RVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R  +N   TLFSP E+  +L+  Y K+ +   E YE       I+  ++I A  L+  ++
Sbjct: 343 RFGKNDYITLFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLM 401

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGS 604
           T    T   ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +
Sbjct: 402 TERSGTARIYVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSA 461

Query: 605 INLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                 F  + FD+   DK+       VR LDN++D   + + +A+K+    R +G+G+ 
Sbjct: 462 ------FVLDNFDWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEKAKK-RRNLGVGVT 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  
Sbjct: 515 NYAAWLASNFASYE--DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGEL 572

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID      +  D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  
Sbjct: 573 PID---WYNKKIDQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK +  G F   N  + N     DL+      D  +     GN        
Sbjct: 629 IEPPRGPVSVKESKEGSF---NQVVPNIEHNIDLY------DYTWKLAKKGN-------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQA 892
            K + T   I             KW+ Q+ S N Y D    P GK        D +Y   
Sbjct: 672 -KPYLTQVAI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLY--F 717

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G K  YY  +R  +  +
Sbjct: 718 WYFGGKNFYYHNTRDGSGTD 737


>gi|109898788|ref|YP_662043.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas atlantica T6c]
 gi|109701069|gb|ABG40989.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 771

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 208/797 (26%), Positives = 335/797 (42%), Gaps = 91/797 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           KL +    G   S + +++  ++  A  GL +VS   V  + +   YDG+   D+   LI
Sbjct: 4   KLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + P+Y  + AR  +  LR++     ++ P    H        +Y    + +
Sbjct: 64  RSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALFAHVTNMVEMQKYDQHLLSD 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             +A    + M D+        + + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 123 YSEAEF--QEMDDY--------IDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L   +  K+ R      FY+  S F     TP +  +G R P  Q SSC L  
Sbjct: 173 YILVAACL-FADYPKDSRMEYIKRFYDATSKFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 AGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   +LFSP +V  L+D +     +FE  Y  YE+     +     +I AV L+   +  
Sbjct: 350 DQHISLFSPSDVPGLYDAFFADQPKFEELYVKYEQDDSIRKT----QIKAVELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L        N  + E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +   F     A     AVR LDN++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGAIESLEDF-----AEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++  N      WD L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DT---YKKDLDKIC-NEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VKS+  G    VV  + + + K   LW      DL  +DG             
Sbjct: 637 PPRGHISVKSSKDGVLKQVVPEYELLKDKYELLW------DLPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAW 893
                         ++     QK++DQ  S N   D  +  G K+       D +   A+
Sbjct: 678 -------------YLQLTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLL--TAY 722

Query: 894 LMGLKTTYYLRSRSATS 910
            +G+KT YY  +R   +
Sbjct: 723 QLGVKTLYYHNTRDGAA 739


>gi|71065820|ref|YP_264547.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           arcticus 273-4]
 gi|71038805|gb|AAZ19113.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter arcticus 273-4]
          Length = 758

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 179/675 (26%), Positives = 305/675 (45%), Gaps = 49/675 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+++   DG L   +  ++  ++E A   L++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   KIQVTKRDGRLEPIDLDKIHKVIEWAAHNLENVSVSQVELKSHIQFYEGIKTRDIHETII 65

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI E  P+Y  + AR  +  LR+ +    +  P    H +      +Y    + +
Sbjct: 66  KSAADLISETTPDYQYLAARLAIFHLRK-IAYNRFTPPHLYDHVKKLTDAGKYDAHILAD 124

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             +A        +FD   L   L + RD    Y  ++ +  +Y +   ++ +  E PQ  
Sbjct: 125 YSRA--------EFD--ELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQFL 174

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           +M V M L  +  + E+      FY+  S F     TP +  SG R P  Q SSC L   
Sbjct: 175 YMLVGMCLFASYDKAERLDYVKRFYDATSEFKISLPTPIM--SGVRTPSRQFSSCVLIEC 232

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G   +  G IPF K+      
Sbjct: 233 GDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVK 292

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ + 
Sbjct: 293 CCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKG 352

Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              +LFSP +   L+D + ++   FE  Y  YE       I+  R+I A  L+  M+   
Sbjct: 353 QDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDP---TIRS-RQIPAADLFSLMMQER 408

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C L +
Sbjct: 409 ASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEAGEIALCTLSA 468

Query: 605 INL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL  + H +    D ++ A  I   VR LD ++D   + ++ A+  +   R +G+G++ 
Sbjct: 469 VNLGKVEHVS----DIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVIN 521

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ P
Sbjct: 522 YAYYLAKNGVRYSDDSALGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILP 581

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +  D++       L W+ L+  + T G+RNS   A+ P+ T + I   +  I
Sbjct: 582 IDT---YKKDLDKIC-QEPLHLDWETLRTEITTHGLRNSTLTALMPSETSSQIANATNGI 637

Query: 783 DPSYQNLYVKSNMSG 797
           +P    + +K++  G
Sbjct: 638 EPPRGLVSIKASKDG 652


>gi|320533558|ref|ZP_08034211.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320134228|gb|EFW26523.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 718

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 190/660 (28%), Positives = 297/660 (45%), Gaps = 71/660 (10%)

Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKET 333
           + V  A    Y   F FE +LG    Y  Y L   +G R    + F  RV M  L L + 
Sbjct: 87  EFVKTAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLADG 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           + E+  ++  + + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     
Sbjct: 145 D-EQLTLDLVDEMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQ 203

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 204 LSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 263

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ 
Sbjct: 264 HAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYG 323

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +   +  +  E Y    D G IK  +KI+A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 324 MPFADINVT-EKYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNRANP 381

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
            +  G V  SNLC+EI   S   E               CNLGS+N+         D   
Sbjct: 382 IK--GKVVMSNLCSEILQVSEPSELNEDLTFAHVGKDISCNLGSLNIA-----KTMDSPD 434

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A TIRTAVR L  V D  +  ++    + NH   AIGLG M     L    I Y S E 
Sbjct: 435 FARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQMNLHGFLARERIHYGSEEG 494

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVR 733
           ++  +     + F A++AS E+A ERG ++  F+ S +  G F       D + +   V+
Sbjct: 495 LDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYASGEFFEKYVTQDFVPVTERVK 554

Query: 734 DELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  A +     +R  W EL ++VK  G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 555 EIFAASSVHVPTREDWAELAEKVKKGGLYNRNLQAVPPTGSISYINNSTSSIHPIVAKVE 614

Query: 791 V-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + K    G       F+ N+             +L Y+                    A+
Sbjct: 615 IRKEGKIGRVYYPAPFMTND-------------NLDYY------------------RDAY 643

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A
Sbjct: 644 EIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNRAQIYAWRKGIKTLYYIRLRQA 703


>gi|92112512|ref|YP_572440.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91795602|gb|ABE57741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 723

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 189/677 (27%), Positives = 318/677 (46%), Gaps = 82/677 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332
           DF  +    +  Y   F F+ +LG    Y  Y L     R  + + F  RV M  L L +
Sbjct: 90  DFPFIKSLFERAYAVKFRFQSFLGAFKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLAQ 148

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            + E  A +  + +    F  +TPT  N G +   +L SCFL  + D++  I  ++    
Sbjct: 149 GD-EALARQLVDEIIHGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSAL 207

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   Y
Sbjct: 208 QLSKRGGGVAFLLSNIREAGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVY 267

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 268 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVE 324

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           ++YGK F +I+  E Y    D   I+   KI+A  L++ +  + FE+G+P++ F+D  N 
Sbjct: 325 NVYGKPFGDISVTEKYYEMVDDARIRK-TKINARELFQTLAEVQFESGYPYVMFEDTVNR 383

Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFD 617
            +P    G ++ SNLC+EI  +N+ S+           E   CNLGS+N+     ++ F 
Sbjct: 384 ANPI--AGRINMSNLCSEILQVNTPSDYEADLGYERIGEDISCNLGSLNIAKTMDSSDF- 440

Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                +T+ TA+R L  V ++ +  ++    ++N    AIGLG M     L   HI Y S
Sbjct: 441 ----GATVETAIRGLTAVSEMSDIRSVPSIAEANKQSHAIGLGQMNLHGYLAREHIHYGS 496

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS---------I 726
            E ++  +     +++HA+ AS  LA ERG A++ F+ S +  GV+  D           
Sbjct: 497 EEGLDFTNLYFYTVTYHALRASNRLAIERGRAFAGFEASDYASGVY-FDKYTEQAWGPRT 555

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + E+ D+  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 556 ARVRELFDKAGIHVPTQEDWRELKASVMAHGLFNRNLQAVPPTGSISYINHSTSSIHP-- 613

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842
                              +V++++ R              +G +G +      + DD +
Sbjct: 614 -------------------VVSKIEIR-------------KEGKLGRVYYPAPYLNDDNQ 641

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 642 DYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTLY 701

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R A ++E + ++G
Sbjct: 702 YVRLRQA-ALEGTEVEG 717


>gi|308049657|ref|YP_003913223.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631847|gb|ADN76149.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
          Length = 757

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 214/801 (26%), Positives = 335/801 (41%), Gaps = 101/801 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     + +++  ++  A  GL +VS   V        YDG+    +   LI 
Sbjct: 5   LLVTKRDGRKEPIDLEKIHRVIYWAAMGLDNVSVSQVELAAQIYFYDGIETEAIHETLIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++                     P +   ++ + 
Sbjct: 65  AAADLISADNPDYQYLAARLAVFHLRKKAFGQ---------------FEPPHLYDHVTKL 109

Query: 264 VKARLLHESMM------DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315
           V+AR   E ++      +FD   L   + + RD  F Y  ++ L  +Y +   + G   E
Sbjct: 110 VQARRYDEHLLADYSREEFD--ELNAYIDHWRDMKFSYAAIKQLEGKYLVQNRVTGEVYE 167

Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
             Q  +M VA  L   +  K+ R      FY+  S F     TP +  SG R P  Q SS
Sbjct: 168 SAQFLYMLVAACL-FADYPKDVRLSYVKRFYDATSKFKISLPTPIM--SGVRTPTRQFSS 224

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G++PFLK 
Sbjct: 225 CVLIECGDSLDSISATSTSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGMLPFLKH 284

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE+ L L+ N G D  R   M+    I     
Sbjct: 285 FQTAVKSCSQGGVRGGAATLFYPLWHLEVEDLLVLKNNRGTDANRIRHMDYGVQINRALY 344

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ +    TLFSP +V  L+D +     EFE  Y+ YE+     +    + + A+ L+ 
Sbjct: 345 QRLIEGGDITLFSPSDVPGLYDAFFADQDEFERLYQQYEQDPSIRK----KTVKAITLFS 400

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            ++     TG  +I   D CN  SP    V  V  SNLC EI L        +  + E A
Sbjct: 401 LLMQERASTGRIYIQHVDHCNTHSPFDPRVAPVKQSNLCLEIALPTKPLSHPDDENGEIA 460

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL    A  Q   D+L      AVR LD+++D   + I+ A+ S    R +G+
Sbjct: 461 LCTLSAFNL---GAIEQL--DELEEMADLAVRALDSLLDYQDYPIKAARISTMNRRTLGI 515

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G++ F   L      Y+      +  ++ E I ++ + ASV LA+E+GA  +F  + + Q
Sbjct: 516 GVINFAYYLAKNGARYSDGSGNNLTHKTFEAIQYYLLKASVGLAKEKGACPAFNETTYSQ 575

Query: 719 GVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           G+ PID+    L  + DE        L W+ L+  +   G+RNS   A+ P+ T + I  
Sbjct: 576 GILPIDTYKKALDAICDE-----PLHLDWEGLRAEILEHGLRNSTLSALMPSETSSQISN 630

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P    + VK +  G    V                            +  IE +
Sbjct: 631 ATNGIEPPRGLVSVKGSKDGVMKQV----------------------------VPGIETL 662

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDF-IYRQ-- 891
            D  + +         + L+      QK++DQA S N   D PS   G K+   +  Q  
Sbjct: 663 RDQYELLWTIPNNTGYLQLV---GLMQKFVDQAISANTNYD-PSRYEGNKMPMKVLLQDL 718

Query: 892 --AWLMGLKTTYYLRSRSATS 910
             A+  GLKT YY  +R   S
Sbjct: 719 MLAYKYGLKTLYYQNTRDGQS 739


>gi|183599609|ref|ZP_02961102.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
 gi|188021859|gb|EDU59899.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
          Length = 763

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 190/676 (28%), Positives = 296/676 (43%), Gaps = 53/676 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHKVITWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++               E   LY ++  R +E G
Sbjct: 65  AAADLITGDTPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-KHVTRLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSQEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSHYPKETRLDYIRRFYDAASTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKN 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551
              TLFSP +V  L+D +     EFE  Y  YE+          RK  + AV L+  M+ 
Sbjct: 351 QDITLFSPSDVPGLYDAFFADQDEFERLYLAYEQD------DSIRKSSVKAVDLFSLMMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        N    E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A       + D+L      AVR LD ++D   + I  AKK     R +G+G++ 
Sbjct: 465 SAFNLGA-----IENLDELEELAVLAVRALDALLDYQDYPIIAAKKGAMGRRTLGIGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ P
Sbjct: 520 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILP 579

Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           ID+    L ++ DE          W+ L+K ++  G+RNS   A+ P+ T + I   +  
Sbjct: 580 IDTYKKELDKLTDE-----PLHYDWETLRKDIQQYGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSG 797
           I+P    + +K++  G
Sbjct: 635 IEPPRGYISIKASKDG 650


>gi|326536453|ref|YP_004300884.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
 gi|312262799|gb|ADQ53055.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
          Length = 751

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 210/807 (26%), Positives = 351/807 (43%), Gaps = 99/807 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G    F+  ++  +V+ AC GL+      +L      + +G+S  D++  +I ++
Sbjct: 5   VLKSSGITEEFSFDKIFKVVDFACQGLE-ADPHTILEAAKPAIMEGMSTKDIQKLVIKAA 63

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             LI   EP+Y  V  R  +  LR++V                   Y ++   +I + VK
Sbjct: 64  VDLISVDEPDYQYVAGRLTMYALRKKV-------------------YNQFDPPHIYDHVK 104

Query: 266 ARLLHESMMDFDLVYLANDLKYE---------RDFAFEYLGLQILYDRYFL--HINGSRI 314
             L+     D DL+Y  ++ +YE         RD  F Y G     ++Y +    NG+  
Sbjct: 105 G-LVASGHYDRDLIYKYSEKEYEILQGIIDHTRDMNFTYAGAMQYKEKYLVKDRSNGTIY 163

Query: 315 EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
           E PQ  +M  AM L  +E  +++ +  ++FYN  S+F     TP L  SG R P  Q SS
Sbjct: 164 ETPQFAYMLQAMCLHQEEDVSKRLEYVIDFYNAASNFEISLPTPIL--SGVRTPTRQFSS 221

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C      D L  I    +          G+G +   +R  G+ I        GVIPF K 
Sbjct: 222 CVKIESGDSLESIGETSKAIMKYISRRAGIGINGGAIRAEGSRIRSGEVSHTGVIPFWKH 281

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R G+       WH++VE+ L L+ N G +  R  +++    I   F+
Sbjct: 282 FTTGVKSCSQGGVRGGSGNINYPMWHLEVEKLLVLKNNKGTEETRIRNIDYTVHINKFFI 341

Query: 491 KRVTQNAGWTLFSPDEVSDL--HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +R+ ++   TLFSPD  + L   D Y  +     E Y ++ +   +   ++I A  L+  
Sbjct: 342 ERLKEDGYITLFSPDIDNGLLYKDFYDSDSSKFIERY-KKLEMNHVIRKKRIKAADLFTT 400

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT------LNSSSEETAVCNL 602
           MLT    TG  +  F D  N ++P  ++  +  +NLC EI       +    EE A+C L
Sbjct: 401 MLTERAGTGRIYAMFVDNVNKQTP--YIEPIKMTNLCVEIKSSRHNPMADKDEEIALCTL 458

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +INL         DY +L+   R  VR LDN++D   + ++ A+K+    R++G+G++ 
Sbjct: 459 SAINLGK--IKTTSDYIRLS---RIIVRALDNLLDYQDYPVKAAEKAKK-RRSLGIGVVN 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y SPEA+ +  E  E I F  I AS+ELA+ERGA      + W +G+ P
Sbjct: 513 LAYFLAKNFVNYNSPEALALVHEHFEAIQFSHIRASMELAKERGASEWHDRTKWSKGLLP 572

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID          +L      +  W+ L+  +   G+RN    A  P+ + + +   +  +
Sbjct: 573 ID----WYNKNVDLLTPNVLKQDWEWLRTEILKYGLRNDTLTAQMPSESSSQLLNATNGV 628

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    L  K++  G F        N+L                    + +++ + D+ +
Sbjct: 629 EPVRALLSTKASKDGAF--------NQL--------------------VPDVDILSDEYQ 660

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP--SGKK------LDFIYRQAW 893
            + A   E      +   +  QK+ DQ  S+N  Y+ +   SGK        D ++ Q +
Sbjct: 661 TLWAMVRENGMTGYLSICAVIQKFFDQGISVNTSYIPQSYKSGKVPVSVMLKDLVFAQKY 720

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVD 920
             GLK  YY  +R     +   +K  D
Sbjct: 721 --GLKAMYYHNTRDGNESDIEMVKEAD 745


>gi|227833935|ref|YP_002835642.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454951|gb|ACP33704.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 720

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 194/671 (28%), Positives = 307/671 (45%), Gaps = 69/671 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DFD +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M       
Sbjct: 86  DFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              K A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     
Sbjct: 145 GDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  
Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMYLFSP---YDVER 321

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS SE               CNLGS+N+ A       D 
Sbjct: 381 NPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIAA-----TMDS 434

Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A T+ TA+R L  V D    +++   +K N    AIGLG M     L   HI Y S 
Sbjct: 435 PDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PIDSIGLLAE 731
           E ++  +     I + A+ AS +LA+ERG Y S F  S +  G F     P D      +
Sbjct: 495 EGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYDPADFAPRTEK 554

Query: 732 VRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 555 VKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASK 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y    + N     D+L+     +
Sbjct: 615 IEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFK-DS 644

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 645 YEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQ 704

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 705 -MALEGTEVEG 714


>gi|262184938|ref|ZP_06044359.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 716

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 306/675 (45%), Gaps = 77/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DFD +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M       
Sbjct: 82  DFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 140

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              K A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     
Sbjct: 141 GDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 200

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 201 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 260

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  
Sbjct: 261 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMYLFSP---YDVER 317

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 318 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 376

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS SE               CNLGS+N+ A       D 
Sbjct: 377 NPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIAA-----TMDS 430

Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A T+ TA+R L  V D    +++   +K N    AIGLG M     L   HI Y S 
Sbjct: 431 PDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 490

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PIDSIGLLAE 731
           E ++  +     I + A+ AS +LA+ERG Y S F  S +  G F     P D      +
Sbjct: 491 EGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYDPADFAPRTEK 550

Query: 732 VRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 551 VKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASK 610

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844
           + ++                                   +G IG +      + +D  + 
Sbjct: 611 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 636

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              ++EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 637 FKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYI 696

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 697 RLRQ-MALEGTEVEG 710


>gi|305680926|ref|ZP_07403733.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659131|gb|EFM48631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
          Length = 719

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 312/675 (46%), Gaps = 78/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DFD +       Y   F F  +LG    Y  Y L   +G+R +E  +     VA+GLA  
Sbjct: 86  DFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADG 145

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +TE  +  V+    + +  F  +TPT  N G  +  +  SCFL  + D++  I  ++   
Sbjct: 146 DTELARHLVD---EIMTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 203 LQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 262

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N+   LFSP    D+
Sbjct: 263 YLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSP---YDV 319

Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F +I+  E+Y+   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N
Sbjct: 320 QRVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMYEDVVN 378

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P    G V+ SNLC+EI  +NS S            E   CNLGS+N+         
Sbjct: 379 RANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AM 431

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D    A T+ TA+R L  V +  + H++   +K N    AIGLG M     L    I Y 
Sbjct: 432 DSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYG 491

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729
           S EA++  +     + +  + AS +LAQERG ++  F+ S +  G +     P D     
Sbjct: 492 SEEALDFTNAYFAAVLYQCLRASNKLAQERGQSFGGFEDSEYASGAYFDRFSPADFAPKT 551

Query: 730 AEVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           A+V+   D  ++   +   WD LK  V T G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 552 AKVQELFDASSITVPTAAEWDALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIA 611

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--IERIPDDLKKI 844
             + ++                         E  I  + Y    + N  +E   D     
Sbjct: 612 SRIEIRK------------------------EGKIGRVYYPAPHMDNTNLEYFQD----- 642

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 643 ---AYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYI 699

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 700 RLRQ-VALEGTEVEG 713


>gi|311113721|ref|YP_003984943.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
 gi|310945215|gb|ADP41509.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
          Length = 726

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 196/697 (28%), Positives = 305/697 (43%), Gaps = 83/697 (11%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
           E Q   PE F RY                FD V       Y   F F  +LG    Y  Y
Sbjct: 82  ENQYYEPELFDRY---------------SFDFVKSLFKRAYAAKFRFPTFLGAFKFYTSY 126

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            L   +G R    + F  RV M   L      K A E  + + S  F  +TPT  N+G R
Sbjct: 127 ALKTFDGQR--YLERFEDRVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLNAGKR 184

Query: 365 H-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S G
Sbjct: 185 QRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQSSG 244

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 245 VIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTLSLGV 304

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +   +N    LFSP +V  ++ +   +  ++ E Y    D   I+   KI+A 
Sbjct: 305 VIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVS-EKYYEMVDDSRIRK-TKINAR 362

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
             ++ +  + FE+G+P++ F+D  N  +P +  G +  SNLC+EI   S           
Sbjct: 363 EFFQTIAEVQFESGYPYVMFEDTVNRSNPIE--GKIIMSNLCSEILQVSKPSIYHDDLSY 420

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
               +   CNLGS+N+         D D L  T+ TA+R L  V D  +  ++   ++ N
Sbjct: 421 AEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 475

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YS 709
               A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+ERG  + 
Sbjct: 476 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 535

Query: 710 SFKGSLWDQGVFPIDSIGLLAE-----VRDELAMNRT-SRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I    E     VR+  A +   +R  W +L   V   GM N N 
Sbjct: 536 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 595

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + + K    G       F+ N+             
Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 642

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                     N+E   D        ++EI    +I++ +   + +DQ  SL L+  D  +
Sbjct: 643 ----------NLEYFQD--------SYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIRLRQ-MALEGTEVEG 720


>gi|126174280|ref|YP_001050429.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS155]
 gi|153000810|ref|YP_001366491.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS185]
 gi|304408852|ref|ZP_07390473.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|307302855|ref|ZP_07582610.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
 gi|125997485|gb|ABN61560.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella baltica OS155]
 gi|151365428|gb|ABS08428.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS185]
 gi|304352673|gb|EFM17070.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|306913215|gb|EFN43637.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
          Length = 762

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 205/782 (26%), Positives = 341/782 (43%), Gaps = 93/782 (11%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   +DG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++     ++ P   TH            + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D +     EFE  Y  YE+ +   +    + I AV L+  M+     TG  +I   D CN
Sbjct: 366 DAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERASTGRIYIQNVDHCN 421

Query: 569 IRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYD 619
             SP    V  +  SNLC EI L        +    E A+C L ++NL +       D +
Sbjct: 422 THSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSDIE 479

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+   A
Sbjct: 480 PLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDGSA 536

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+       RD +   
Sbjct: 537 NELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDKIC 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VKS+  G 
Sbjct: 592 AEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKDG- 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                     +LKQ       ++ D      S   + ++P +   +              
Sbjct: 651 ----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI--------- 684

Query: 859 SASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSRSA 908
                QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R  
Sbjct: 685 ----MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDG 737

Query: 909 TS 910
            S
Sbjct: 738 AS 739


>gi|225021559|ref|ZP_03710751.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945550|gb|EEG26759.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 719

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 313/675 (46%), Gaps = 78/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DFD +       Y   F F  +LG    Y  Y L   +G+R +E  +     VA+GLA  
Sbjct: 86  DFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADG 145

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +TE  +  V+    + +  F  +TPT  N G  +  +  SCFL  + D++  I  ++   
Sbjct: 146 DTELARHLVD---EIMTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 203 LQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 262

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N+   LFSP    D+
Sbjct: 263 YLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSP---YDV 319

Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F +I+  E+Y+   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N
Sbjct: 320 QRVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMFEDVVN 378

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P    G V+ SNLC+EI  +NS S            E   CNLGS+N+         
Sbjct: 379 RANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AM 431

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D    A T+ TA+R L  V +  + H++   +K N    AIGLG M     L    I Y 
Sbjct: 432 DSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYG 491

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729
           S EA++  +     + +  + AS +LA+ERG ++  F+ S +  G +     P D +   
Sbjct: 492 SEEALDFTNAYFAAVLYQCLRASNKLARERGQSFGGFEDSEYASGAYFDRFSPADFVPKT 551

Query: 730 AEVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           A+V+   D  ++   +   W+ LK  V T G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 552 AKVQELFDASSITVPTAAEWEALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIA 611

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--IERIPDDLKKI 844
             + ++                         E  I  + Y    + N  +E   D     
Sbjct: 612 SRIEIRK------------------------EGKIGRVYYPAPHMDNTNLEYFQD----- 642

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 643 ---AYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYI 699

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 700 RLRQ-VALEGTEVEG 713


>gi|54309623|ref|YP_130643.1| ribonucleotide-diphosphate reductase subunit alpha [Photobacterium
           profundum SS9]
 gi|46914061|emb|CAG20841.1| putative ribonucleoside-diphosphate reductase,alpha subunit
           [Photobacterium profundum SS9]
          Length = 753

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 201/793 (25%), Positives = 343/793 (43%), Gaps = 83/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   +    ++  ++  A  GL +VS   V  +++   YDG+  +D+   +I
Sbjct: 4   QLTVTKRDGRQETIELDKIHRVINWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++     ++ P    H              + +
Sbjct: 64  KAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNLVNK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ +A  L  K  ++ + +    FY+  S+F     TP +  SG R P  Q SSC L   
Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 DDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ + 
Sbjct: 291 CCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              +LFSP +V  L+D +     EFE  Y  YE+ A   +      I A+ L+  ++   
Sbjct: 351 QNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------NSSSE--ETAVCNLGS 604
             TG  +I   D CN  SP    V  +  SNLC EI L      N   E  E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       D ++LA      VR LD ++D   + +  A++S    R +G+G++ + 
Sbjct: 467 FNLGA--IETLDDLEELAD---LTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  I  ++ E I ++ + ASV LA+E+GA  +F  + + +G+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNITHQTFEAIQYYLLKASVGLAKEQGACPAFHETTYSKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D++         W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKAIDDVCSEEL-HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VK++  G   ++   +    K +D ++  ++ ++  +DG               
Sbjct: 638 PRGFVSVKASKDG---ILKQVVPEYSKYKDNYE--LLWNIGSNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK-KLDFIYR---QAWLMGL 897
                       ++     QK+IDQ+ S N   D   + +GK  +  + +    A+ +G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPSKQANGKVPMTLLLKDLLNAYKLGV 726

Query: 898 KTTYYLRSRSATS 910
           KT YY  +R   S
Sbjct: 727 KTLYYHNTRDGAS 739


>gi|15616798|ref|NP_240010.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681553|ref|YP_002467938.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471236|ref|ZP_05635235.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134536|sp|P57276|RIR1_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|25285846|pir||H84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) [imported] -
           Buchnera sp. (strain APS)
 gi|10038861|dbj|BAB12896.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621842|gb|ACL29998.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624396|gb|ACL30551.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085921|gb|ADP66003.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086492|gb|ADP66573.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087075|gb|ADP67155.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 761

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 206/787 (26%), Positives = 346/787 (43%), Gaps = 87/787 (11%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG     N  ++  ++  A  GL DVS   V   +    Y+ ++  ++   +I ++  LI
Sbjct: 11  DGRKEKINLDKIHKVLNWASEGLDDVSVSQVELCSRIQFYNNITTINIHETIIKAAADLI 70

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            ++ P+Y  + AR  +  LR++       +P K   H  + +  E   +Y E  +K    
Sbjct: 71  SQDTPDYQYMAARLAIFHLRKKAYGQF--EPPKLYDHVKKMVDLE---KYDENLLKNYSY 125

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMG 327
            E       + + + + + RD  F Y  ++ L  +Y +   +NG   E  Q  ++ ++  
Sbjct: 126 KE------FLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLYILISAC 179

Query: 328 LALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382
           L   +  K  R      FYN +S+F     TP +  SG R P  Q SSC L    D L  
Sbjct: 180 L-FSQYPKNVRMNYIHRFYNAISTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLNS 236

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I               G+G +   +R LG+ I        G IPF K       + +QGG
Sbjct: 237 INATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCSQGG 296

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+      TLF
Sbjct: 297 VRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQITLF 356

Query: 503 SPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           SP +V DL+  +    K+F+  Y  YE+  +  +    + I A+ L+  M+     TG  
Sbjct: 357 SPSDVPDLYKAFFSDQKKFKKIYLQYEKNKNIRK----KTIKALDLFSLMMQERTSTGRI 412

Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610
           ++   D CN+ S     +  +  SNLC EITL + S         E A+C L + NL   
Sbjct: 413 YVQNVDHCNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNLGKI 472

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            + + F    + S     VR LD ++D   + +  AKKS  + R++G+G++ F   L   
Sbjct: 473 KSLDDFKELSILS-----VRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +  ++ E + ++ + AS ELA+E+GA S F  + +  G  PID+     
Sbjct: 528 KVRYSDGSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDT---YK 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  D++  N    L W+ L+ ++K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 585 KYIDDIC-NEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643

Query: 791 VKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +K +  G    VV  +    L+   LWD                   IP++      T +
Sbjct: 644 IKVSKDGILRQVVPEYKKLRLQYELLWD-------------------IPNN------TGY 678

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY 902
                  ++ A   QK+IDQ+ S+N + D       +   K+L +    ++ +GLKT YY
Sbjct: 679 -------LQLAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKTLYY 731

Query: 903 LRSRSAT 909
             +R  +
Sbjct: 732 QNTRDGS 738


>gi|311232338|gb|ADP85192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris RCH1]
          Length = 754

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 14  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 73

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 74  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 133

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 134 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 193

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +   L  +E    
Sbjct: 194 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 246

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +E   R+A                        +E+G P I F D  N  +P    G + S
Sbjct: 247 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 282

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 283 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 338

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 339 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 398

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S      F    +G                 P+     
Sbjct: 399 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 431

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+  V VN       
Sbjct: 432 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 484

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 485 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 543

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894
            S  + L  P+   ++ I    W+
Sbjct: 544 VSKTVNL--PNNATIEDIRNIYWM 565


>gi|46581780|ref|YP_012588.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451203|gb|AAS97848.1| ribonucleoside-diphosphate reductase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 777

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 37  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 96

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 97  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 156

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 157 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 216

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +   L  +E    
Sbjct: 217 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 269

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +E   R+A                        +E+G P I F D  N  +P    G + S
Sbjct: 270 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 305

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 306 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 361

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 362 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 421

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S      F    +G                 P+     
Sbjct: 422 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 454

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+  V VN       
Sbjct: 455 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 507

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 508 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 566

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894
            S  + L  P+   ++ I    W+
Sbjct: 567 VSKTVNL--PNNATIEDIRNIYWM 588


>gi|217973231|ref|YP_002357982.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS223]
 gi|217498366|gb|ACK46559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS223]
          Length = 762

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 207/784 (26%), Positives = 341/784 (43%), Gaps = 97/784 (12%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAK 218
           +++  ++  A  GL++VS   V   ++   +DG+    +   +I ++  LI  E P+Y  
Sbjct: 20  EKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPESPDYQF 79

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + AR  +  LR++     ++ P   TH            + +E G     + +     +L
Sbjct: 80  LAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKLVELGKYDMHILQDYSREEL 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLAL---KET 333
             +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L     KET
Sbjct: 129 DVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACLFARYPKET 188

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENA 391
            + K   +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I        
Sbjct: 189 -RLKYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIV 245

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
                  G+G +   +R LG+ I G      G +PF K       + +QGG R GA   +
Sbjct: 246 KYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLF 305

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              WH++VE  L L+ N G +  R   ++    +  +  +R+ +    +LFSP +V  L+
Sbjct: 306 YPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGENISLFSPSDVPGLY 365

Query: 512 DLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDP 566
           D +     EFE  Y  YE+ +        RK  I AV L+  M+     TG  +I   D 
Sbjct: 366 DAFFEDQNEFERLYVQYEQDS------CIRKKTIKAVELFSLMMQERASTGRIYIQNVDH 419

Query: 567 CNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFD 617
           CN  SP    V  +  SNLC EI L        +    E A+C L ++NL +       D
Sbjct: 420 CNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNLGS--IKELSD 477

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    + Y+  
Sbjct: 478 IEPLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNGMKYSDG 534

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736
            A E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+       RD + 
Sbjct: 535 SANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYK-----RDLDK 589

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                  L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VKS+  
Sbjct: 590 ICAEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKSSKD 649

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G           +LKQ       ++ D      S   + ++P +   +            
Sbjct: 650 G-----------QLKQ-------VVPDFDTLKDSYELLWKMPSNDGYLQLVGI------- 684

Query: 857 IESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYYLRSR 906
                  QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY  +R
Sbjct: 685 ------MQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTR 735

Query: 907 SATS 910
              S
Sbjct: 736 DGAS 739


>gi|326803226|ref|YP_004321044.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650452|gb|AEA00635.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 732

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 191/699 (27%), Positives = 318/699 (45%), Gaps = 88/699 (12%)

Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           ++DFAF  L G    Y  Y L  +     +       +A  L L   +++       ++L
Sbjct: 87  DQDFAFPNLIGAMKFYSAYALKTDDKAYYLETYEDRVIANALFLANGDQDLAKDLAADIL 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S+  F  +TPT  N+   R  +  SC+L  V D++  I  ++  +  L+K  GG+    T
Sbjct: 147 SN-RFQPATPTFLNAAKKRRGEYISCYLLRVEDNMESIARSIATSLQLSKRGGGVALCLT 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G   ++ GV+P +K+  D+    NQ G+R+GA   YL   H D+ +FLD 
Sbjct: 206 NLRETTAPIKGMANQASGVVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPDILKFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAY 522
           ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK   +  I  
Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIKKVYGKAMSDISITE 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +  E  A+    K F  ISA  L++ +  + FE+G+P++ F+D  N R+P +  G +  S
Sbjct: 323 KYDELLANPAIHKDF--ISARKLFQVIAELHFESGYPYLMFEDTVNSRNPHKKKGRIVMS 380

Query: 583 NLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EIT  S+              E   CNLGS+N +A   +   D+  L S    A++
Sbjct: 381 NLCSEITQVSTPSSFNEDLSFRTIGEDICCNLGSLN-IAKAMDQAPDFGHLVS---HAIQ 436

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD +    +  +    KK N  + A+GLG M     L   HI Y S EAV+  D     
Sbjct: 437 ALDRISRKSDLESAPSIKKGNQANHAVGLGAMNLHGFLATNHIYYDSEEAVDFTDMFFYA 496

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRLP 745
           +++HA  +S  L ++ G ++ F  S +  G + +       + + E    L  +   +LP
Sbjct: 497 LAYHAFKSSHALVKQHGPFAGFAESEYADGSYFMKYTESRVQPKTERVRQLLKDYGLQLP 556

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  L K ++  G+ N++ +A+APT +I+ +   + S+ P                 
Sbjct: 557 SQEDWQALAKAIQEDGIANAHLLAVAPTGSISYLSSCTPSLQP----------------- 599

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMW 855
               +V+ ++ R              +G +G +  +P      D+       A+E+ P  
Sbjct: 600 ----VVSPVETR-------------KEGKLGRV-YVPAYQIDNDNYAYYQRGAYEVGPQA 641

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I+  +  QK +DQA SL L++  E + + L+  Y  A+  G  T YY+R R        
Sbjct: 642 IIDIVAAAQKHVDQAISLTLFMSSEATTRDLNRAYIYAYSKGCSTIYYVRVRQDVLAGSE 701

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            L+  D  L+A P T P+         SSC  ++ECE C
Sbjct: 702 HLES-DELLSADP-TSPDR--------SSCNGNSECESC 730


>gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99036640|gb|ABF63252.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Ruegeria sp. TM1040]
          Length = 710

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 187/667 (28%), Positives = 305/667 (45%), Gaps = 80/667 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           D  Y + F F  +LG    Y  Y L   +G R    + +  RV M         EK A++
Sbjct: 86  DAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR--YLERYEDRVVMNALTLARGDEKLAMK 143

Query: 342 FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             + +    F  +TPT  N+G +   +  SCFL  + D++  I   +     L+K  GG+
Sbjct: 144 LMSEIIDGRFQPATPTFLNAGKKARGEFVSCFLLRLEDNMESIGRGINSALQLSKRGGGV 203

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 204 ALMLTNIREHGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIL 263

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-E 519
            FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG+ F E
Sbjct: 264 RFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---HDVEKVYGQAFSE 320

Query: 520 IAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I+  E Y    D  +I+  +KI+A A ++ +  + FE+G+P+I F+D  N  +P    G 
Sbjct: 321 ISVTEKYHEMVDNPQIRK-KKINARAFFQTIAEIQFESGYPYIMFEDTVNAANPI--AGR 377

Query: 579 VHSSNLCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI  +N  S        E+      CNLGS+N+         D   LA T+ 
Sbjct: 378 IAMSNLCSEILQVNEPSKFNDDLSYEQMGTDISCNLGSMNIA-----RAMDGGDLAGTVG 432

Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TA+R L+ V +++   ++   +K N    AIGLG M     L    I Y S E V+  + 
Sbjct: 433 TAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQMNLHGYLARERIHYGSAEGVDFTNI 492

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIGLLAEVRDEL 736
               + +HAISAS  LA+E+ + +  F+ S +  G F         +     + E+ +  
Sbjct: 493 YFCTVLYHAISASNALAKEKKSKFKGFEDSAYADGSFFEKYVEKDWLPETDRVKELFETA 552

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +R  W+ L+ +V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 553 GVEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSISYINYATSSIHPITAKIEIRK--- 609

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852
                                          +G IG +      + +D  + +  A+EI 
Sbjct: 610 -------------------------------EGKIGRVYYPAPYMTNDNLEYYRDAYEIG 638

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P  +I++ +   + +DQ  SL L+   E S + ++     AW  G+KT YY+R R   ++
Sbjct: 639 PEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-QAL 697

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 698 EGTEVEG 704


>gi|325291516|ref|YP_004277380.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325059369|gb|ADY63060.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 729

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 194/670 (28%), Positives = 315/670 (47%), Gaps = 70/670 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 97  FNFVRDLYDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGD 156

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 157 ---EQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSAL 213

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 214 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 273

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 274 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVY 333

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  ++ E Y+       I+  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 334 GVPFTEISVS-EKYQEMVADSRIRK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 391

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + E               CNLGS+N+ +  A +  D+ 
Sbjct: 392 PI--AGRISMSNLCSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIAS--AMDSADFG 447

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 448 K---TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEE 504

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLA--EV 732
            ++  +     +++HAI AS  LA ERG ++  F+ S +  G +     D   L A  +V
Sbjct: 505 GIDFTNIYFYTVTYHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKV 564

Query: 733 RD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           RD   +  ++  ++  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P     
Sbjct: 565 RDLFEKAGISIPTQEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHP----- 619

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           +V++++ R    E  I  + Y    + N     D+L + +  A+
Sbjct: 620 ----------------IVSKIEIR---KEGKIGRVYYPASYLSN-----DNL-EYYQDAY 654

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 655 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQ- 713

Query: 909 TSVEKSTLKG 918
            ++E + ++G
Sbjct: 714 MALEGTQVQG 723


>gi|154249118|ref|YP_001409943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153054|gb|ABS60286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
          Length = 841

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 197/702 (28%), Positives = 324/702 (46%), Gaps = 117/702 (16%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP-QAFFMRVAMGLALKETE---- 334
           L + +++ +D        +IL +RYFL   +G  +E        RVA  +A  E      
Sbjct: 5   LTSVIEHWKDVELSKNAYKILSERYFLKTPSGEFLEKSWDDICRRVARVIATAELVNNPE 64

Query: 335 -KEKRAVE-----------FYNLLSSFHFMCSTPTLFNSG--TRHP-------------- 366
            KEK   E           F++ L S  F+ ++PTLFN+G   RH               
Sbjct: 65  LKEKSPFEQLDEVKFWESTFFDFLKSRIFIPNSPTLFNAGMGVRHELLWKSIDDMTLEDY 124

Query: 367 -----------QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                       LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + 
Sbjct: 125 WEIYNSRNHLHMLSACFVVPVEDSIEGIFEAVKEYALITKAGGGIGSNFSRLRPKGSFVA 184

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GT+G++ G + F+ V N     V QG +R+GA+   L   H D+EEF+  ++  G+D  +
Sbjct: 185 GTHGQASGPVSFMHVFNSAVGVVEQGYRRRGALMGILNIDHPDIEEFITAKE--GNDGEK 242

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
                         +K    + G T+    +  +L  LY ++ EI  ++ +    +    
Sbjct: 243 V-------------LKFFNISVGITM----DRQELLKLYMEDGEIELKHPKCNGSK---- 281

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
              ++    L  K+    ++TG P + F    N          + S+N C EI L     
Sbjct: 282 ---RVKVRELINKIAKNAWKTGDPGLAFLSEMNKYYAMYPEMTIESTNPCGEIGLAPYE- 337

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNLGSI++   + N +F ++  A   R AVR LD+VID+N   +EK +K+    R 
Sbjct: 338 ---ACNLGSIDVAKFYMNGEFYWEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSRR 394

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MGF   L+++ IPY S E  + A +   +++ H    S +LAQ +G++  F+ S 
Sbjct: 395 IGLGIMGFADLLYMMDIPYNSHEGRQFAADMTAYMAIHGHDESNKLAQLKGSFPLFEKSR 454

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD-ELKKRVK--TIGMRNSNCMAIAPTATI 772
           + +               DE A        +D ELK+  K    G RN   + IAPT +I
Sbjct: 455 YYR--------------EDEFAPFAMGMSKYDNELKEVFKESKKGKRNVAVLTIAPTGSI 500

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGS 830
           +NI   S  ++P++   YV+     D T    F VN++ +  L  E +  + D     GS
Sbjct: 501 SNIADTSSGLEPNFLLAYVRYMNKHDGTKEALFYVNKVLESKLNKEILERVKDKLVERGS 560

Query: 831 IGNIERIPDDLKKIHATAFEIDPM--WLIESASRR------QKWIDQAQS------LNLY 876
           + +I  IP+++K++  TA +I PM   L++ A +R       K I+   S      LN+Y
Sbjct: 561 LQDIPEIPEEIKRVFVTAMDISPMDHLLMQDAFQRYVDNNISKTINMPNSATEEDVLNIY 620

Query: 877 LDEPSGKKLDF----IYRQAWLMG--LKTTYYLRSRSATSVE 912
           L+     KL+     IYR   L    L +   L+++ A+ V+
Sbjct: 621 LE---AMKLNIRGLTIYRDGSLQTQVLTSAKNLKTKDASKVQ 659


>gi|120601069|ref|YP_965469.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris DP4]
 gi|120561298|gb|ABM27042.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris DP4]
          Length = 781

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 284/624 (45%), Gaps = 91/624 (14%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 41  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 100

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 101 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 160

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 161 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 220

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +   L  +E    
Sbjct: 221 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLEKGRLKARE---V 273

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +E   R+A                        +E+G P I F D  N  +P    G + S
Sbjct: 274 FELLVRKA------------------------WESGDPGIVFIDRINRDNPTPDQGEIES 309

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 310 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 365

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 366 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 425

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S      F    +G                 P+     
Sbjct: 426 DEGRAASKQLAKERGPFPAYPAS-----TFAERDLG-----------------PY----- 458

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+  V VN       
Sbjct: 459 -------RNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 511

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 512 RAEGCHSPRLMETVA-SKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 570

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWL 894
            S  + L  P+   ++ I    W+
Sbjct: 571 VSKTVNL--PNSATIEDIRNIYWM 592


>gi|303245840|ref|ZP_07332122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
 gi|302492623|gb|EFL52491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
          Length = 743

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 175/618 (28%), Positives = 290/618 (46%), Gaps = 83/618 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHF 351
           +L  RY     +G   E  ++ F RVA  +A  E   +K        A  FY+L++   F
Sbjct: 22  VLAKRYLQKGPDGEPTEDARSLFWRVATAIAAMEAHYDKSPFTPEALARAFYDLMTGMRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 82  LPNSPTLMNAGAPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   +
Sbjct: 142 SRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFITCKERENE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + + FM+ V +   + L  P +                         
Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLVDPRDK------------------------ 233

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V    +A  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L 
Sbjct: 234 ---RVVGSQNAAEVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL   F   A +  D+  L  T+  AVR LDNVID + + +++  +
Sbjct: 291 PYE----ACNLGSINLSVFFDPEAEDGIDWKGLTETVHLAVRFLDNVIDASRYPLDQITE 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MGF   L+LL IPY S EA+ +A++ ME I   A SAS  LA ERG +
Sbjct: 347 MVRANRKIGLGIMGFADLLYLLRIPYDSTEALSLAEKVMETIQGEARSASKTLAAERGPF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            ++  S     VF   ++G                 P+            RN+    IAP
Sbjct: 407 PAYAES-----VFGKRNLG-----------------PY------------RNATTTTIAP 432

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + +  M G+  V  N   V  +++   + E+++ ++   
Sbjct: 433 TGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANPHFVAAMQEAGAYSESLMEEVT-R 491

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LD 886
            GSI +I  +P++L+ +  TA +I+P+W ++  +  QK+ D A S  + L   + K+ + 
Sbjct: 492 KGSIAHIGMLPEELRDVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNKATKEDIR 551

Query: 887 FIYRQAWLMGLKTTYYLR 904
            IY  A+ +G K     R
Sbjct: 552 EIYWLAYELGCKGVTVYR 569


>gi|114047557|ref|YP_738107.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-7]
 gi|113888999|gb|ABI43050.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-7]
          Length = 762

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 205/791 (25%), Positives = 346/791 (43%), Gaps = 93/791 (11%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKV 219
           ++  ++  A  GL++VS   V   T+   +DG+    +   +I S+  LI  E P+Y  +
Sbjct: 21  KIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIKSAADLISPESPDYQFL 80

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR  +  LR++       +P K   H           + +E G     + +     +L 
Sbjct: 81  AARLAVFHLRKKAFGQF--EPPKLYDH---------VTKLVELGKYDMHILQDYTREELD 129

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEK 337
            +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L      KE 
Sbjct: 130 IMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAACL-FARYPKET 188

Query: 338 R---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAM 392
           R     +FY+ +S+F     TP +  +G R P  Q SSC L    D L  I         
Sbjct: 189 RLQYVKDFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECGDSLDSINATASSIVK 246

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                 G+G +   +R LG+ I G      G +PF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAATLFY 306

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH++VE  L L+ N G +  R   ++    +  L  +R+ +    +LFSP +V  L+D
Sbjct: 307 PIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENISLFSPSDVPGLYD 366

Query: 513 LYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   EFE  Y  YE+ +   +    + + AV L+  M+     TG  +I   D CN 
Sbjct: 367 AFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERASTGRIYIQNVDHCNT 422

Query: 570 RSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            SP    V  +  SNLC EI L        +  + E A+C L ++NL A    N  + + 
Sbjct: 423 HSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNLGA--IKNLAELEP 480

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA     AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    + Y+   A 
Sbjct: 481 LAD---LAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGMKYSDGSAN 537

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
            +  ++ E I F+ + AS+ LA+E+ A   F  + + QG+ PID+       RD +   +
Sbjct: 538 NLTHKTFEAIQFYLLKASMNLAKEQDACPLFNETTYAQGILPIDTYK-----RDLDKICS 592

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
               L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK++  G  
Sbjct: 593 EPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKASKDGQL 652

Query: 800 -TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             VV  F  +ELK    ++  ++  +  ++G                           ++
Sbjct: 653 KQVVPDF--DELK----YNYELLWQMPSNEG--------------------------YLQ 680

Query: 859 SASRRQKWIDQAQSLNLYLDEP--SGKKL-------DFIYRQAWLMGLKTTYYLRSRSAT 909
                QK++DQA S N   D     G+K+       D +   A+ +G+KT YY  +R   
Sbjct: 681 LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLL--NAYKLGVKTLYYHNTRDGA 738

Query: 910 SVEKSTLKGVD 920
           S +   +  ++
Sbjct: 739 SDQHDDITNIE 749


>gi|159184147|ref|NP_353104.2| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|159139482|gb|AAK85889.2| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 693

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 195/670 (29%), Positives = 314/670 (46%), Gaps = 70/670 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 61  FNFVRDLYDEAYSRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGD 120

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 121 ---EQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSAL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 238 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVY 297

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  + +E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 298 GVPLTEISVTEKYHEMVADSRIRK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + E               CNLGS+N+ +  A +  D+ 
Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEFNADLSYSHMGKDISCNLGSLNIAS--AMDSADFG 411

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 412 K---TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEE 468

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLA--EV 732
            ++  +     +++HAI AS  LA ERG ++  F+ S +  G +     D   L A  +V
Sbjct: 469 GIDFTNIYFYTVTYHAIRASNRLAVERGQSFKGFENSKYASGDYFDKYTDREWLPATEKV 528

Query: 733 RD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           RD   +  +   ++  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P     
Sbjct: 529 RDLFEKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVPPTGSISYINHSTSSIHP----- 583

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           +V++++ R    E  I  + Y    + N     D+L + +  A+
Sbjct: 584 ----------------IVSKIEIR---KEGKIGRVYYPASYLSN-----DNL-EYYQDAY 618

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 619 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIKTIYYIRLRQ- 677

Query: 909 TSVEKSTLKG 918
            ++E + ++G
Sbjct: 678 MALEGTQVQG 687


>gi|15839968|ref|NP_335005.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|13880109|gb|AAK44819.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
          Length = 735

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 180/681 (26%), Positives = 289/681 (42%), Gaps = 96/681 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N             LH L                     K+  ++ 
Sbjct: 344 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 376

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 547

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 548 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 576

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 577 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 635

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 636 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 693

Query: 899 --TTYYLRSRSATSVEKSTLK 917
             T Y   SR    +  +  K
Sbjct: 694 GITVYRYGSREGQVLSSAAPK 714



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+   +P K++     +R+G +  FD ++I  A+ +A         +R +   D      
Sbjct: 43  SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 85

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             TV + +       I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 86  PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142


>gi|300932706|ref|ZP_07147962.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           resistens DSM 45100]
          Length = 720

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 192/682 (28%), Positives = 312/682 (45%), Gaps = 80/682 (11%)

Query: 264 VKARLLHESMMD-FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMP 317
           V+ +   +S++D +D  ++ +  K  Y + F F+ +LG    Y  Y L   NG R +E  
Sbjct: 73  VENKYYDKSVLDNYDFPFVKSLFKRAYAKKFRFQSFLGAYKYYTSYTLKTFNGKRYLERF 132

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376
           +     VA+GLA         A +  + +    F  +TPT  N G  +  +  SCFL  +
Sbjct: 133 EDRVCMVALGLA---AGNRALAEDLVDEIMDGRFQPATPTFLNIGKAQRGEPVSCFLLRI 189

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D   
Sbjct: 190 EDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDAFS 249

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N
Sbjct: 250 YANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNN 309

Query: 497 AGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               LFSP    D+  +YGK F      E+YE   +   I+  +KI+A   ++ +  + F
Sbjct: 310 DDMYLFSP---YDVERIYGKAFADVPVSEHYEEMVEDPRIRK-QKINARQFFQTLAEIQF 365

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNL 602
           E+G+P+I F+D  N  +P +  G +  SNLC+EI   S+              +   CNL
Sbjct: 366 ESGYPYIMFEDTVNRANPIE--GRITHSNLCSEILQVSTPSVFNADLTYETIGDDISCNL 423

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+         D +  + TI TA+R L  V D  +  ++   ++ N    AIGLG M
Sbjct: 424 GSLNIA-----KAVDSENFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQM 478

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                L   HI Y S EA++  +     + + AI AS  +A+ERG ++++F+ S +  G 
Sbjct: 479 NLHGFLGREHIHYGSEEALDFTNVYFAAVMYEAIKASNTIAKERGESFTNFENSDYASGE 538

Query: 721 F-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771
           F     P +   +   VR E+  N + ++P    W  LKK V+  G+ N N  A+ PT +
Sbjct: 539 FFDRYDPAEFQPITERVR-EIIENSSIQVPTADDWAALKKSVQEHGLYNRNLQAVPPTGS 597

Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + + K    G       ++ NE             +L Y++  
Sbjct: 598 ISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTNE-------------NLDYYE-- 642

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                            A+EI    +I++ +   K++DQ  SL L+  D  + + ++   
Sbjct: 643 ----------------DAYEIGFEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQ 686

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             AW  G+KT YY+R R    V
Sbjct: 687 IYAWRKGIKTIYYIRLRQTALV 708


>gi|253797502|ref|YP_003030503.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289552822|ref|ZP_06442032.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|253319005|gb|ACT23608.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437454|gb|EFD19947.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|328457287|gb|AEB02710.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 4207]
          Length = 706

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 78  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 137

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 138 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 197

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 198 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 257

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 258 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 314

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 315 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 347

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 348 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 403

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 404 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 463

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 464 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 518

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 519 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 547

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 548 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 606

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 607 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 664

Query: 899 --TTYYLRSR 906
             T Y   SR
Sbjct: 665 GITVYRYGSR 674



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+   +P K++     +R+G +  FD ++I  A+ +A         +R +   D      
Sbjct: 14  SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 56

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             TV + +       I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 57  PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 113


>gi|86148041|ref|ZP_01066343.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85834174|gb|EAQ52330.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 693

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 173/593 (29%), Positives = 278/593 (46%), Gaps = 66/593 (11%)

Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  GG+    T +R 
Sbjct: 136 FQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNLRE 195

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++  
Sbjct: 196 QGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKREN 255

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD+ ++   QN    LFSP +V  ++ +   E  +  E Y    
Sbjct: 256 ADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHEMV 314

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           D   I+   K+SA  L++ +  + FE+G+P+I F+D  N  +P Q  G V+ SNLC+EI 
Sbjct: 315 DDPRIRK-GKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ--GRVNMSNLCSEIL 371

Query: 589 TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +N +S                CNLGSIN+         D  +L+ T+ TA+R L+ V +
Sbjct: 372 QVNEASNYDDDLNYSHIGRDISCNLGSINIA-----KALDGGRLSQTVDTAIRALNAVSE 426

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           ++  +++   +K N    AIGLG M     L    I Y SPEA++        + +H ++
Sbjct: 427 MSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHCLA 486

Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747
           AS +LAQE +  +  F+ S +  G F    +      + ++  +  SRL         W 
Sbjct: 487 ASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSEWS 546

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFL 806
           ELK+ V + G+ N    AI PT +I+ I   + SI P    + + K    G       +L
Sbjct: 547 ELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKEGKIGRVYFPAPYL 606

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            N                        N+E   D        AF I P  +I+  +   + 
Sbjct: 607 NN-----------------------SNLEYFRD--------AFSIGPKAIIDVYAAATEH 635

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +DQ  SL L+  DE + + ++     AW   +KT YY+R R   ++E + ++G
Sbjct: 636 VDQGLSLTLFFDDEVTTRDINKAQIYAWTKKIKTLYYIRMRQ-KALEGTQVEG 687


>gi|228861250|ref|YP_002854273.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
 gi|194307530|gb|ACF42260.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
          Length = 565

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 252/568 (44%), Gaps = 98/568 (17%)

Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  S+P L + +G+  P   SCFL  VPD + G+     E   L+   GG+   W  VRG
Sbjct: 56  FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A       KS G IPFL   +    A  QG  R+G+  AY+   H D+ EF+ +R  T
Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD  R+  +++    I D FM+ V +   W L  P   +  H                  
Sbjct: 167 GDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKSGAVAH------------------ 208

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586
                     +SA  LW ++L   F TG P++ F D  N  +    +  G+ +  SNLC 
Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638
           EI L ++++ TAVC L S+NL       ++D  +    +   V +LDNVI          
Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             HT  +A +S    R+IGLG MG+   L    IP+ S EAV +       I   A+ A+
Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRGIKSAAVRAT 372

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA+ERG      G                                           G+
Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN++ +A+AP A  A + G S S++P     YV    +G    VN +L  +L+   L  E
Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRAGSHQAVNPYLKRDLESLGLDTE 450

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q QSLNL+  
Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905
             + K  L  ++R AW  G K  YYLR+
Sbjct: 511 IGADKTNLSDVHRLAWKSGCKGLYYLRT 538


>gi|94499219|ref|ZP_01305757.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
 gi|94428851|gb|EAT13823.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
          Length = 756

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 190/683 (27%), Positives = 303/683 (44%), Gaps = 59/683 (8%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++  L +   DG     +  ++  ++  A  GL++VS   V         DG+S SD+  
Sbjct: 1   MSSTLHVTKRDGNRAPLDLDKIHKVLTWAAEGLENVSVSEVELRAQIQFSDGISTSDIHE 60

Query: 201 ALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI E  P+Y  + AR  +  LR++               E   LY E+  + 
Sbjct: 61  TLIKSAADLISENTPDYQYMAARLNIFHLRKKAYG----------QFEPPALY-EHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
           ++     R L E     +   +   +++ RD  F Y  ++ L  +Y     + G   E P
Sbjct: 110 VDMDRYDRHLLEDYTKEEFDEMEGFIEHGRDLNFAYAAVKQLEGKYLAQNRVTGEVFESP 169

Query: 318 QAFFMRVAMGLAL-KETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
           Q  F+ V +G  L    EK  R      FY+ +S+F     TP +  +G R P  Q SSC
Sbjct: 170 Q--FLYVLIGACLFANYEKSNRMDYVRRFYDAVSTFKLSLPTPIM--AGVRTPTRQFSSC 225

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I  A            G+G +   +R LG+ I G      G IPF K  
Sbjct: 226 VLIETDDSLDSINAAAGSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +
Sbjct: 286 QTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYE 345

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRK--ISAVALW 546
           R+ +    TLFSP +V  L+D + ++   FE  Y  YE+          RK  I A+ L+
Sbjct: 346 RLIKGGNITLFSPSDVPGLYDAFFEDQAKFEELYVKYEQD------DSIRKQTIKAMELF 399

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITL--------NSSSEE 596
             +L     TG  +I   D CN  SP   +H   +  SNLC EI L        N    E
Sbjct: 400 SILLQERASTGRIYIQNVDHCNTHSPFNPEH-APIRQSNLCLEIALPTKPLKDINDKDGE 458

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            A+C L + NL A    ++    +  S I   VR LDN++    + +  A+ ++ + R +
Sbjct: 459 IALCTLAAFNLGALENLDE---LEELSDI--IVRALDNLLSYQDYPMAAAEIASESRRTL 513

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G++ +   L    + Y+   A  +  ++ E I ++ + AS +LA+E GA + F  + +
Sbjct: 514 GVGVINYAYYLAKNGVKYSDGSANGLTHQTFEAIQYYLLKASNQLAKEVGACAKFNETTY 573

Query: 717 DQGVFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            QG+ PID+    L     +EL      R  W+ L+  +KT G+RNS   A+ P+ T + 
Sbjct: 574 SQGILPIDTYKKDLDKVCEEEL------RYDWEALRGEIKTHGLRNSTLTALMPSETSSQ 627

Query: 775 ICGVSQSIDPSYQNLYVKSNMSG 797
           I   +  I+P    + +K++  G
Sbjct: 628 ISNATNGIEPPRGYISIKASKDG 650


>gi|299537050|ref|ZP_07050353.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298727291|gb|EFI67863.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 697

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 189/700 (27%), Positives = 330/700 (47%), Gaps = 97/700 (13%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------AFEY------- 295
           RY  E V  RL +   ++  + YL ++  YE+ F               A++Y       
Sbjct: 32  RYFLEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMEFIKKLYKKAYDYNFRFPSF 91

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +     YD Y +   +G  I E  +   + +A+ LA   T   +R+VE   ++ ++    
Sbjct: 92  MSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTALAERSVE--AMMEAYQ--P 147

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +   +L SCF  ++ D +  I   +     L++  GG+G + T +R LG 
Sbjct: 148 ATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGD 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GVIP  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD
Sbjct: 208 PIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADD 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYEN-YERQAD 530
           + R   ++T   IP +F + + ++    LFSP    D+   YGK   EI+  + Y    D
Sbjct: 268 KIRLATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKEYGKRMSEISISDMYYELLD 324

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             +I+  ++++A  L+ ++    FE+G+P+  F D  N   P +++G V  SNLCTEI  
Sbjct: 325 NPKIRKIKRLNARKLYTEVKKAQFESGYPFEIFDDNVNKVHPLKNIGRVKMSNLCTEIL- 383

Query: 591 NSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               +ET++               CNLGSI++  H A+   D+  L   + TA+ +L NV
Sbjct: 384 --QVQETSIITDQDQPNDYGLDVSCNLGSIDI--HAASKVKDFGTL---VDTAMHLLTNV 436

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             + +   +    K+N    ++GLG M     L    I Y S E+++  D  ME +++++
Sbjct: 437 SQMTHIKNVPSVAKANQLMHSVGLGCMNLHGHLVTEGILYGSRESIDFMDHFMEAMNYYS 496

Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WD 747
           + +S+E+A+E+ A +  F+ S +  G +    I    E    + +     +P      W+
Sbjct: 497 LKSSMEMAKEKAATFYRFEDSDYASGSYFDQYINKAEEELSPVVLKALGNIPIITNKMWE 556

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ +S  +AIAPT +I+ I   + SI P  + + V                
Sbjct: 557 TLKQDVMQYGLFHSYRLAIAPTGSISYIRSCTASIAPCTERVEV---------------- 600

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                RD  D   I  + +          + +D   ++  A++++P  LI+  +  QK +
Sbjct: 601 -----RDYADSRTIYPMPH----------LTNDNSHLYVEAYDVNPYDLIDLYAASQKHV 645

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ  S+ LY+ D  + ++L  +Y  AW+ G+K+ YY+R R
Sbjct: 646 DQGISMTLYVTDNWTTEQLAKVYIYAWIKGIKSVYYVRQR 685


>gi|289446117|ref|ZP_06435861.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
 gi|289419075|gb|EFD16276.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 736

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 179/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N             LH L                     K+  ++ 
Sbjct: 344 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 376

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 547

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 548 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 576

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 577 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 635

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 636 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 693

Query: 899 --TTYYLRSR 906
             T Y   SR
Sbjct: 694 GITVYRYGSR 703



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+   +P K++     +R+G +  FD ++I  A+ +A         +R +   D      
Sbjct: 43  SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDM 85

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             TV + +       I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 86  PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142


>gi|332306883|ref|YP_004434734.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174212|gb|AEE23466.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 790

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 203/785 (25%), Positives = 333/785 (42%), Gaps = 91/785 (11%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214
           S + +++  ++  A  GL +VS   V  + +   YDG+   D+   LI S+  LI  + P
Sbjct: 35  SIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETLIRSAADLISTDAP 94

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  + AR  +  LR++     ++ P    H        +Y    + +  +A    + M 
Sbjct: 95  DYQYLAARLAIFHLRKKAYGQ-FEPPALFAHVTQMIEMQKYDQHLLSDYSEAEF--QEMD 151

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332
           D+        + + RD  F Y  ++ L  +Y +   + G   E  Q  ++ VA  L   +
Sbjct: 152 DY--------IDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FAD 202

Query: 333 TEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGAL 387
             K+ R      FY+  S F     TP +  +G R P  Q SSC L    D L  I    
Sbjct: 203 YPKDTRMDYIKRFYDATSKFKISLPTPIM--AGVRTPTRQFSSCVLIEAGDSLDSINATA 260

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
                      G+G +   +R LG+ I G      G IPF K       + +QGG R GA
Sbjct: 261 SAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGA 320

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              +   WH++VE  L L+ N G +  R   ++       L  +R+ ++   +LFSP +V
Sbjct: 321 ATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQHISLFSPSDV 380

Query: 508 SDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             L+D +     +FE  Y  YE+     + +V     AV L+   +     TG  ++   
Sbjct: 381 PGLYDAFFADQAKFEELYVKYEQDDSIRKTQV----KAVELFSLFMQERASTGRIYLQNV 436

Query: 565 DPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615
           D CN  SP    V  +  SNLC EI L        N  + E A+C L + NL A  +   
Sbjct: 437 DHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAFNLGAIESVED 496

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F     A     AVR LDN++D   + +  A  +    R +G+G++ F   L    + Y+
Sbjct: 497 F-----AEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKNGVKYS 551

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRD 734
              A  +   + E + +H + AS  LA+E+GA   F  + + QG+ PID+    L ++ D
Sbjct: 552 DGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDLDKICD 611

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           E          WD L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ VKS+
Sbjct: 612 E-----PLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISVKSS 666

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G   V+   +    + +D ++  ++ DL  +DG                         
Sbjct: 667 KDG---VLKQVVPEYERLKDKYE--LLWDLPSNDG------------------------- 696

Query: 855 WLIESASRRQKWIDQAQSLNLYLD--EPSGKKL-------DFIYRQAWLMGLKTTYYLRS 905
             ++     QK++DQ  S N   D  +  G K+       D +   A+ +G+KT YY  +
Sbjct: 697 -YLQLTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLL--TAYQLGVKTLYYHNT 753

Query: 906 RSATS 910
           R   +
Sbjct: 754 RDGAA 758


>gi|15607710|ref|NP_215084.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis H37Rv]
 gi|148660339|ref|YP_001281862.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148821771|ref|YP_001286525.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|167968357|ref|ZP_02550634.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis H37Ra]
 gi|215402336|ref|ZP_03414517.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|215429402|ref|ZP_03427321.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|215444680|ref|ZP_03431432.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|218752208|ref|ZP_03531004.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|254230912|ref|ZP_04924239.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|254363528|ref|ZP_04979574.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549524|ref|ZP_05139971.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260199573|ref|ZP_05767064.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|260203727|ref|ZP_05771218.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289441955|ref|ZP_06431699.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289573162|ref|ZP_06453389.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289744283|ref|ZP_06503661.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289752609|ref|ZP_06511987.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289756647|ref|ZP_06516025.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|289760689|ref|ZP_06520067.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|294996080|ref|ZP_06801771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis 210]
 gi|297633060|ref|ZP_06950840.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730037|ref|ZP_06959155.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN R506]
 gi|306774674|ref|ZP_07413011.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|306779425|ref|ZP_07417762.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|306783211|ref|ZP_07421533.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|306787581|ref|ZP_07425903.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|306792131|ref|ZP_07430433.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|306796318|ref|ZP_07434620.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|306802177|ref|ZP_07438845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|306806386|ref|ZP_07443054.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|306966585|ref|ZP_07479246.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|306970778|ref|ZP_07483439.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|307078502|ref|ZP_07487672.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|307083064|ref|ZP_07492177.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|313657365|ref|ZP_07814245.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN V2475]
 gi|81669533|sp|O53767|NRDZ_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase nrdZ
 gi|2909629|emb|CAA17441.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|124599971|gb|EAY58981.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|134149042|gb|EBA41087.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504491|gb|ABQ72300.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148720298|gb|ABR04923.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|289414874|gb|EFD12114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289537593|gb|EFD42171.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289684811|gb|EFD52299.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289693196|gb|EFD60625.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289708195|gb|EFD72211.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|289712211|gb|EFD76223.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|308216780|gb|EFO76179.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|308327639|gb|EFP16490.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|308331994|gb|EFP20845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|308335781|gb|EFP24632.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|308339387|gb|EFP28238.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|308343263|gb|EFP32114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|308347155|gb|EFP36006.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|308351070|gb|EFP39921.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|308355729|gb|EFP44580.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|308359684|gb|EFP48535.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|308363589|gb|EFP52440.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|308367225|gb|EFP56076.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|323721044|gb|EGB30108.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902399|gb|EGE49332.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis W-148]
          Length = 692

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 64  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650

Query: 899 --TTYYLRSR 906
             T Y   SR
Sbjct: 651 GITVYRYGSR 660



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A         +R +   D        TV + +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 56  RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99


>gi|260185444|ref|ZP_05762918.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 693

 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 178/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 64  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650

Query: 899 --TTYYLRSR 906
             T Y   SR
Sbjct: 651 GITVYRYGSR 660



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A         +R +   D        TV + +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 56  RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99


>gi|261493905|ref|ZP_05990415.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261310438|gb|EEY11631.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 756

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 207/808 (25%), Positives = 342/808 (42%), Gaps = 92/808 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     ++ P    H +      +Y    + + 
Sbjct: 65  AAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLYEHVKKLVALGKYDADLLSDY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                  E+M  F        + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 124 TPEEW--ETMNGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K     +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           D L  I      +A + KY     G+G +   +R LG+ I G      G IPF K     
Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ 
Sbjct: 289 VKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLI 348

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +    +LFSP +V  L++ +     +FE  Y  YE+     +    RK+ AV L+  ++ 
Sbjct: 349 KGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
               TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL         + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ 
Sbjct: 465 SAFNL-----GTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ P
Sbjct: 520 YAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLP 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     E+ DEL         W++L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 580 IDTYK--KEI-DELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  +   +     LWD                   IP+  
Sbjct: 636 EPPRGYISVKASKDGILKQVVPEYERLKAYYELLWD-------------------IPNMD 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR-------QAWL 894
             +H                  QK++DQA S N   D     +     +        A+ 
Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPDRFAEAKVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSR-SATSVEKSTLKGVDG 921
            GLKT YY  +R  A  V+    +G  G
Sbjct: 724 YGLKTLYYQNTRDGAEDVQDDLDEGCAG 751


>gi|51893898|ref|YP_076589.1| ribonucleotide-diphosphate reductase subunit alpha [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857587|dbj|BAD41745.1| ribonucleotide reductase [Symbiobacterium thermophilum IAM 14863]
          Length = 776

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 178/649 (27%), Positives = 285/649 (43%), Gaps = 110/649 (16%)

Query: 295 YLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE--FYNLL 346
           ++   ++  RY  +  +G+R E P     RVA  +A  E     ++KE RAVE  FY L+
Sbjct: 5   HIAKTVMEKRYLRMKEDGTR-ETPDEMLRRVARVIAAVEEKYGASKKEIRAVEERFYQLM 63

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
               FM ++PT   +GT   QLS+CF+  V D L  I+  +++ A++ +  GG G  ++ 
Sbjct: 64  DRQDFMPNSPTFTGAGTALGQLSACFVLPVGDSLPEIYETMKQAALIHQTGGGTGFAFSR 123

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  +  + G + G + FL+V N +  A+ QGG R+GA    L   H D+ +F++ +
Sbjct: 124 LRPAGDVVRSSQGVASGPVSFLRVYNASTEAIKQGGTRRGANMGILRVDHPDILQFIESK 183

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D  +  + N +  I D FM+ + +   + L +P                   N E
Sbjct: 184 A----DITQITNFNISVAITDAFMEALEKGTEYELINP------------------RNGE 221

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V  K+SA  +W K++   ++TG P I F D  N R+P  HV V+ ++N C 
Sbjct: 222 ---------VTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEATNPCG 272

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINC 640
           E  L         CNLGSINL A+F  N +      D+++L    RTA R LDNVID N 
Sbjct: 273 EQPLPPYGS----CNLGSINL-ANFVKNPYTDRAEVDWERLGEVARTATRFLDNVIDANK 327

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +  +     R IGLG+MG+   L  + +PY S EAV + +  M FI   A+  S+ 
Sbjct: 328 YPLPQIAEKALRDRRIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEESMA 387

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ RG Y  ++GS W +    +                                   RN
Sbjct: 388 LAEVRGPYPEWEGSQWHKAGLKV-----------------------------------RN 412

Query: 761 SNCMAIAPTATIANICG-----VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +    +APT TI+          S  I+P +  ++ + N +G   +        + +R+ 
Sbjct: 413 ATLTTVAPTGTISLFAARPDLPCSGGIEPKFALVFTR-NQAGALMLDVDGQFASIARREG 471

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W    +       G+   +  +P+  ++I AT+ +I P W +    R Q        L +
Sbjct: 472 WYSDELMQQVADRGTARGVSGVPEKWQRIFATSHDITPEWHV----RMQAAFQGGDGLPV 527

Query: 876 ---YLDEPSGKKLDFI-----------YRQAWLMGLKTTYYLRSRSATS 910
               +D    K ++F            Y  AW +GLK     R  S  S
Sbjct: 528 DQQPVDAAVSKTINFPHHATVEDVGKSYALAWQLGLKGITVYRDGSRAS 576


>gi|254361271|ref|ZP_04977414.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261495802|ref|ZP_05992237.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|110735341|gb|ABG89241.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica]
 gi|153092767|gb|EDN73810.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261308536|gb|EEY09804.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 756

 Score =  224 bits (570), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 207/808 (25%), Positives = 342/808 (42%), Gaps = 92/808 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     ++ P    H +      +Y    + + 
Sbjct: 65  AAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLYEHVKKLVALGKYDADLLSDY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                  E+M  F        + + RD  F Y  ++ L  +Y +   ++G   E  Q  +
Sbjct: 124 TPEEW--ETMNGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K     +      FY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 LLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           D L  I      +A + KY     G+G +   +R LG+ I G      G IPF K     
Sbjct: 232 DSLDSINAT---SAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ 
Sbjct: 289 VKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLI 348

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +    +LFSP +V  L++ +     +FE  Y  YE+     +    RK+ AV L+  ++ 
Sbjct: 349 KGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
               TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL         + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ 
Sbjct: 465 SAFNL-----GTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVIN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ P
Sbjct: 520 YAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLP 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     E+ DEL         W++L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 580 IDTYK--KEI-DELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VK++  G    VV  +   +     LWD                   IP+  
Sbjct: 636 EPPRGYISVKASKDGILKQVVPEYERLKAYYELLWD-------------------IPNMD 676

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR-------QAWL 894
             +H                  QK++DQA S N   D     +     +        A+ 
Sbjct: 677 GYLHLVGI-------------MQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSR-SATSVEKSTLKGVDG 921
            GLKT YY  +R  A  V+    +G  G
Sbjct: 724 YGLKTLYYQNTRDGAEDVQDDLDEGCAG 751


>gi|33152745|ref|NP_874098.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           ducreyi 35000HP]
 gi|33148969|gb|AAP96487.1| ribonucleoside-diphosphate reductase, alpha chain [Haemophilus
           ducreyi 35000HP]
          Length = 756

 Score =  224 bits (570), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 200/794 (25%), Positives = 335/794 (42%), Gaps = 93/794 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G     + +++  ++  A  GL +VS   V    +   Y G+  SD+   +I
Sbjct: 4   QLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI KE P+Y  + AR  +  LR++   T                YP +   +I++
Sbjct: 64  KAAADLISKETPDYQYLAARLAVFHLRKKAYGT---------------FYPPHLFEHIQK 108

Query: 263 GVKA----RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            VK      LL +   + +   +   L +ERD  F Y  ++ L  +Y +   + G   E 
Sbjct: 109 LVKLGKYDNLLLKQYSEEEWDIMNGFLVHERDMNFSYAAVKQLEGKYLVQNRVTGEIYES 168

Query: 317 PQAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372
            Q  ++ VA  L  +  +  +      FY+  S+F     TP +  +G R P  Q SSC 
Sbjct: 169 AQFLYILVAACLFSSYPKATRLDYIHRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCV 226

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L    D L  I               G+G +   +R LG+ I        G IPF K   
Sbjct: 227 LIECGDSLDSINATSSAVIKYVSQRAGIGINAGAIRALGSPIRNGEAFHTGCIPFYKHFQ 286

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               + +QGG R GA   +   WH++VE  + L+ N G +  R   M+    I  L  +R
Sbjct: 287 TAVKSCSQGGVRGGAATVFYPIWHLEVESLVVLKNNRGVEDNRCRHMDYGVQINKLIYQR 346

Query: 493 VTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           + + +  TLFSP +V  L++ +    ++FE+ Y  YE+     +    + I A+ L+  +
Sbjct: 347 LIKGSDITLFSPSDVPGLYEAFFADQEKFELLYLQYEQDPSIRK----KSIKAIELFSLL 402

Query: 550 LTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC 600
           +     TG  +I   D  N  SP    V  +  SNLC EI L        N    E A+C
Sbjct: 403 MQERASTGRIYIHNVDHSNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNINDEQGEIALC 462

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L + NL         + D+L      AVR LD ++D   + ++ A+K     R++G+G+
Sbjct: 463 TLSAFNL-----GTLQNLDELEPLADLAVRALDALLDYQNYPVKAAEKGAIARRSLGIGV 517

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           + +   L    + Y+   A ++   + E + ++ + AS+ LA+E G    F  + + +G+
Sbjct: 518 INYAYYLAKHGVRYSDGSANDLTHRTFEAVQYYLLKASMNLAKELGPCKGFNETTYAKGI 577

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            PIDS     +  D+L     S   W+ L+  +K  G+RNS   A+ P+ T + I   + 
Sbjct: 578 LPIDS---YKKDIDQLT-QEPSHYDWEALRADIKQFGLRNSTLTALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P    + +K++  G    VV  +   + +   LWD                   IP+
Sbjct: 634 GIEPPRGYVSIKASKDGILKQVVPEYETLKDQYELLWD-------------------IPN 674

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---A 892
               +H                  QK++DQA S N   D    E     +  + +    A
Sbjct: 675 MDGYLHLVGI-------------MQKFVDQAISANTNYDPKRFEDDKVPMKILLKDLLTA 721

Query: 893 WLMGLKTTYYLRSR 906
           +  GLKT YY  +R
Sbjct: 722 YKYGLKTLYYQNTR 735


>gi|300741627|ref|ZP_07071648.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
 gi|300380812|gb|EFJ77374.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
          Length = 722

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 195/697 (27%), Positives = 305/697 (43%), Gaps = 83/697 (11%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
           E Q   PE F RY                FD V       Y   F F  +LG    Y  Y
Sbjct: 78  ENQYYEPELFDRY---------------SFDFVKSLFKRAYAAKFRFPTFLGAFKFYTSY 122

Query: 306 FLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            L   +G R    + F  RV M   L      K A E  + + S  F  +TPT  N+G +
Sbjct: 123 ALKTFDGQR--YLERFEDRVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLNAGKK 180

Query: 365 H-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S G
Sbjct: 181 QRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQSSG 240

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 241 VIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTLSLGV 300

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +   +N    LFSP +V  ++ +   +  ++ E Y    D   I+   KI+A 
Sbjct: 301 VIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVS-EKYYEMVDDSRIRK-TKINAR 358

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
             ++ +  + FE+G+P++ F+D  N  +P +  G +  SNLC+EI   S           
Sbjct: 359 EFFQTIAEVQFESGYPYVMFEDTVNRSNPIE--GKIIMSNLCSEILQVSKPSIYHDDLSY 416

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
               +   CNLGS+N+         D D L  T+ TA+R L  V D  +  ++   ++ N
Sbjct: 417 AEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 471

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YS 709
               A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+ERG  + 
Sbjct: 472 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 531

Query: 710 SFKGSLWDQGVFPIDSIGLLAE-----VRDELAMNRT-SRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I    E     VR+  A +   +R  W +L   V   GM N N 
Sbjct: 532 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 591

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + + K    G       F+ N+             
Sbjct: 592 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 638

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                     N+E   D        ++EI    +I++ +   + +DQ  SL L+  D  +
Sbjct: 639 ----------NLEYFQD--------SYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 680

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 681 TRDINRAQIYAWRKGIKTIYYIRLRQ-MALEGTEVEG 716


>gi|169827409|ref|YP_001697567.1| ribonucleoside-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168991897|gb|ACA39437.1| Ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 697

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 181/664 (27%), Positives = 317/664 (47%), Gaps = 76/664 (11%)

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLA 329
           M + D +       Y+ +F F  ++     YD Y +   +G  I E  +   + +A+ LA
Sbjct: 68  MYEMDFIKKLYKKAYDYNFRFPSFMSASKFYDSYAMKSRDGEEILEKYEDRIVIIALYLA 127

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
              T   +R+VE   ++ ++    +TPT  NSG +   +L SCF  ++ D +  I   + 
Sbjct: 128 QGNTVLAERSVE--AMMEAYQ--PATPTALNSGKKARGELVSCFKLSMDDSMNSIAENIG 183

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L++  GG+G + T +R LG  I     ++ GVIP  K+  ++    NQ G+R G+ 
Sbjct: 184 YCLELSRLGGGVGVNLTDLRPLGDPIKEILNRASGVIPVAKLLENSFSYSNQLGQRNGSG 243

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H D+E F+  +K   DD+ R   ++T   IP +F + + ++    LFSP    
Sbjct: 244 VVYLNIFHADIENFISSKKPNADDKIRLATLSTGIIIPSIFFELMKRDKDIVLFSP---Y 300

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK   EI+  E Y    D  +I+  ++++A  L+ ++    FE+G+P+  F D 
Sbjct: 301 DIFKVYGKRMSEISISEMYYELLDNPKIRKIKRLNARRLYTEVKKAQFESGYPFEIFDDN 360

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHF 611
            N   P +++G V  SNLCTEI      +ET+V               CNLGSI++  H 
Sbjct: 361 VNDVHPLKNIGRVKMSNLCTEIL---QVQETSVITDQDQPNEYGLDVSCNLGSIDI--HA 415

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           A+   D++ L   I TA+ +L NV  + +   +    K+N    ++GLG M     L   
Sbjct: 416 ASKVNDFEAL---IDTAMHLLTNVSQMTHIKNVPSVAKANQLMHSVGLGCMNLHGHLVTE 472

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL 729
            I Y S +++   D  ME ++++++ +S+E+A+E+   +  F+ S +  G++    +   
Sbjct: 473 GIMYGSKDSIHFMDRFMEAMNYYSLKSSMEMAKEKAETFYRFEDSDYASGIYFDQYVNKT 532

Query: 730 AEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            E      +     +P      W  LK+ V   G+ +S  +AIAPT +I+ I   + SI 
Sbjct: 533 EEELSPAVLKALGNIPIITSKMWGLLKQDVMQYGLFHSYRLAIAPTGSISYIRSCTASIS 592

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P  + + V                     RD  D   I  + +          + ++   
Sbjct: 593 PCTERVEV---------------------RDYADSRTIYPMPH----------LTNENSH 621

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
           ++  A+++DP  LI+  +  QK +DQ  S+ LY+ D  + ++L  +Y  AW+ G+K+ YY
Sbjct: 622 LYVEAYDVDPYDLIDLYAASQKHVDQGISMTLYVTDNWTTEQLAKVYIYAWVKGIKSVYY 681

Query: 903 LRSR 906
           +R R
Sbjct: 682 VRQR 685


>gi|222081802|ref|YP_002541167.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           radiobacter K84]
 gi|221726481|gb|ACM29570.1| ribonucleoside-diphosphate reductase, alpha subunit [Agrobacterium
           radiobacter K84]
          Length = 717

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 190/661 (28%), Positives = 299/661 (45%), Gaps = 75/661 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA   
Sbjct: 85  FNFVRDLFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLA--- 141

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 142 QGNESLARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLMRVEDNMESIGRSINSAL 201

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 202 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 261

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++
Sbjct: 262 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVY 321

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 322 GVPFTEISVTEKYREMVADNHIRK--KKIKARDFFQVIAEIQFESGYPYIMFEDTVNRAN 379

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D D
Sbjct: 380 PI--AGRITMSNLCSEILQVSEASTYRDDLSYEHMGKDISCNLGSLNIAA-----AMDSD 432

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI TA+R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 433 NFGKTIETAIRALTAVSDMSRISSVPSIEKGNDESHAIGLGQMNLHGYLARERILYGSEE 492

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSI 726
            V+  +     +++HAI AS  LA ER  ++  F+ S +  G +             + +
Sbjct: 493 GVDFTNIYFYTVTYHAIRASNRLAAERERSFKGFENSKYASGDYFDKYTEQEWKPATERV 552

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L E      ++  +R  W ELK+ V T G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 553 RTLFET---AGIDIPTREDWQELKQAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP-- 607

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
                              +V++++ R    E MI  + Y    + N     D+L   + 
Sbjct: 608 -------------------IVSKIEIRK---EGMIGRVYYPAAFMTN-----DNLD-YYQ 639

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R 
Sbjct: 640 DAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRL 699

Query: 906 R 906
           R
Sbjct: 700 R 700


>gi|326783874|ref|YP_004324268.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003886|gb|ADO98281.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 766

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 184/692 (26%), Positives = 316/692 (45%), Gaps = 48/692 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G +   + +++  +VE AC GL  VS+  V  ++    YDG++ ++++  L+ 
Sbjct: 5   IKVVKRAGHIEPLDLEKMHKMVELACDGLAGVSASQVEIQSGIQFYDGMTTAEIQGILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI+ + PNY  V AR LL  LR+ +   +         HE+  L  +   R +++G
Sbjct: 65  SASDLIDLDAPNYQYVAARLLLFGLRKNLYGRI---------HELPTLLDQ-IKRGVDKG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           +    +       ++  L   + +ERD+ F Y GL+ + D+Y +     G+  E PQ  +
Sbjct: 115 IYDGDILNKYTKSEIEDLDKIIDHERDYLFTYAGLRQVVDKYLVQDRSTGALYETPQFMY 174

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + +AM +   E   E R      +YN +S       TP +   G R P  Q +SC L  V
Sbjct: 175 LLIAMTI-FAEYPPENRIDYVTRYYNAISRHKINIPTPIM--GGVRTPIRQFASCVLVDV 231

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T  
Sbjct: 232 DDTLDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVR 291

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
              Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  ++
Sbjct: 292 CCTQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIED 351

Query: 497 AGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              TLFSP    +L + +G  +F+  Y  YE      E    RK+ A  L   +L    E
Sbjct: 352 KEITLFSPHSCPNLFESFGTPDFDELYCRYELD----ESIPKRKVRAQELIMNLLKERAE 407

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINL 607
           TG  +I   D CN  S  +    V  SNLC EITL        ++   E A+C L +IN+
Sbjct: 408 TGRIYIMNIDHCNDHSSFKD--KVSMSNLCQEITLPTEPLQHIDAIDGEIALCILSAINV 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      ++L      +VR L+ +ID   + ++ A+ +    R++G+G +G    L
Sbjct: 466 -----GKLTRLEELEDLCDLSVRSLEELIDYQDYPVKAAELATLGRRSLGVGYIGLAHYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y S +A +   +  E   ++ + +S +LA+E+G  + F  + +  G+ PID+  
Sbjct: 521 AKHGWKYDSQDAWDAVHKLTESFQYYLLKSSNQLAKEKGCCTDFFSTKYSDGILPIDTYK 580

Query: 728 LLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                RD   + +   +  W+ L+  +   G+R+S   A  P+ + + +   +  I+P  
Sbjct: 581 -----RDVDEITKVGLKHDWESLRASIVEHGLRHSTLSAQMPSESSSVVSNATNGIEPPR 635

Query: 787 QNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD 817
             L +K +  G    VV S+   +     LWD
Sbjct: 636 DYLSIKKSKKGPLKQVVPSYGHLKNNYTLLWD 667


>gi|215410107|ref|ZP_03418915.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298524058|ref|ZP_07011467.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493852|gb|EFI29146.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
          Length = 692

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 177/670 (26%), Positives = 286/670 (42%), Gaps = 96/670 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 64  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R +GLG+M
Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKVGLGVM 449

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIA-QRGGVRGYPRLPAEV 592

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK 898
           +    TA EI P W +   +  Q+ ++ A S  + L  P+   +D    IY  AW   +K
Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL--PATATVDDVRAIYVAAWKAKVK 650

Query: 899 --TTYYLRSR 906
             T Y   SR
Sbjct: 651 GITVYRYGSR 660



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A         +R +   D        TV + +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 56  RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99


>gi|88801049|ref|ZP_01116597.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
 gi|88776188|gb|EAR07415.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
          Length = 757

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 189/697 (27%), Positives = 309/697 (44%), Gaps = 52/697 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L+I   DG L     +++  +++ A  GL+ VS   V  +     YDG+S +++   L+ 
Sbjct: 3   LQIKKRDGRLEPIQLEKIHRVLQWASEGLKKVSVSEVELKARIQFYDGMSTTEIHEMLVR 62

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +++P+Y  + AR  +  LR++     ++ P          +Y +   R + E 
Sbjct: 63  SAADLISDRQPDYQFMAARLAIFHLRKQAFGR-FEPPH---------VY-DLVTRLVNER 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
               +L  +  + D   L   L + RD  F Y G++ L  +Y +   + G   E PQ  +
Sbjct: 112 RYDPILLSAYSEADWDELNGCLDHSRDLDFAYAGVKQLQGKYLVQDRVTGRIFESPQFVY 171

Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + +   L       E R     +FY   S+  F   TP +  +G R P  Q SSC L   
Sbjct: 172 LLIGACL-FSGYPAETRLTYVKKFYQAASTHRFSLPTPIM--AGVRTPTRQFSSCVLIEC 228

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +RG+G+ I        G IPF K+      
Sbjct: 229 DDTLDSINATSSSVVNYVSQRAGIGINAGRIRGIGSPIRSGEAFHTGCIPFYKLFQSAVK 288

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WHI+ EE L L+ N G D  R   ++    +  L  +R+ Q+
Sbjct: 289 SCSQGGIRGGAATVFYPLWHIEAEELLVLKNNRGVDENRCRHLDYGVQLNRLMYQRLIQD 348

Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +  +LFSP EV  L+D + ++   FE  Y+ YE           RK++A  L+  ++   
Sbjct: 349 SHISLFSPSEVPGLYDAFFEDQARFETLYKQYEEDTSIRR----RKVNARDLFALLMQER 404

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGS 604
             TG  +I   D CN   P       +  SNLC EI        +L+    E A+C L +
Sbjct: 405 ASTGRIYIQNVDHCNEHGPFDPAKAPIRQSNLCMEIALPTKPLQSLDDEQGEIALCTLAA 464

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL     ++  D D+ A  +   VR LD ++D   + ++ A+ S H  R +G+G++ + 
Sbjct: 465 VNL--GVLDSLDDIDETAELL---VRALDALLDYQHYPVKAAELSTHKRRPLGVGVINYA 519

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y    A  +   + E + F  +SAS  LA+E+GA S F  +   +G  PID
Sbjct: 520 YYLAKHGYRYDDEGAKGLTHRTFERLQFALLSASNRLAREQGACSGFAETKLAKGSMPID 579

Query: 725 --SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                L A  ++ L  +      W  L++ +   G+RNS   A+ P+ T A I   +  I
Sbjct: 580 RYKADLDAVCQEPLLCD------WAALRESILEHGVRNSTLSALMPSETSAQIANATNGI 633

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDE 818
           +P    + +K++  G    V   +     Q D LWD+
Sbjct: 634 EPPRALVSIKASKDGVLKQVVPEIERLADQYDLLWDQ 670


>gi|303325479|ref|ZP_07355922.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
 gi|302863395|gb|EFL86326.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
          Length = 774

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 171/625 (27%), Positives = 286/625 (45%), Gaps = 90/625 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHF 351
           +L  RY    ++G   E P+  F RVA  +A +E + E+ + E       FY+L++ + F
Sbjct: 33  VLQKRYLRKSLDGKLSETPRDLFWRVASAIAAEEGKYERSSCEPEALARDFYDLMTGWKF 92

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 93  LPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKE 152

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ +F+  ++  G+
Sbjct: 153 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILDFIRAKEKEGE 212

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V +         DE  DL                R  + 
Sbjct: 213 ----FNNFNLSVGLTEAFMQAVEK---------DEHYDL----------------RAPNT 243

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  ++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L 
Sbjct: 244 GE--VVDRLRARDVFDLLVKKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 301

Query: 592 SSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                   CNLGSINL   +          A +  D+ +L   +  +VR LDNVID +  
Sbjct: 302 PFE----ACNLGSINLACFYLPGHNDDADPARDGIDWAELRRVVHLSVRFLDNVIDASLF 357

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  ++   +R IGLG+MGF   L  L +PY S E + +A+  M F+      AS EL
Sbjct: 358 PLPRIAETVRKNRKIGLGVMGFADLLFELGVPYNSREGIALAERVMGFVQEEGHKASAEL 417

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ERG + ++  S +                                   + K    RN+
Sbjct: 418 AKERGPFPAYPASTY----------------------------------AKAKKGPYRNA 443

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAM 820
               IAPT T++ I G S  ++P +   + ++ + G+  V VN +    L    L    +
Sbjct: 444 TVTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALAATGLAGHEL 503

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           + D     GSI +++ +P  L+K+  TA +I+P+W +   +  Q+  D A S  + L   
Sbjct: 504 M-DSVVAKGSIQDMDFLPAKLRKVFVTAMDIEPVWHLRMQAAFQRHTDNAVSKTVNLSNT 562

Query: 881 SGKKLDF-IYRQAWLMGLKTTYYLR 904
           + ++  F IY  A+  G K     R
Sbjct: 563 ATEQDIFDIYWLAYKEGCKGVTVYR 587


>gi|88859280|ref|ZP_01133920.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818297|gb|EAR28112.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
          Length = 760

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 201/793 (25%), Positives = 342/793 (43%), Gaps = 83/793 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKELLDLDKIHRVIEWAAKGLNNVSVSQVELKSHIQFYDGIRTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++     ++ P+         LY ++  + +E+
Sbjct: 64  KAAADQISKESPDYQFLAARLAIFHLRKKAYGQ-FEPPR---------LY-DHVVKMVED 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
                 L       +   L   L + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 113 NRYDAHLLADYTQAEFEQLDEVLDHNRDLTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           ++ VA  L  K  ++ +      FY+ +S F     TP +  +G R P  Q SSC L   
Sbjct: 173 YILVAASLFSKYPQSIRLDYIKRFYDAVSQFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       +   R+ ++
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKVMYSRLIKD 350

Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D + ++   FE  Y  YE+     +    ++I A+ L+   +   
Sbjct: 351 DYITLFSPSDVPGLYDAFFEDQALFESLYVQYEQDPAIRK----KRIKAIELFSMFVQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGS 604
             TG  ++   D CN  SP    V  +  SNLC EI L +           E A+C L +
Sbjct: 407 ASTGRIYLQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLKHVMDEEGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A  + +     +L      AVR LDN++D   + +  AK +    R +G+G++ + 
Sbjct: 467 FNLGAIDSLD-----ELEELAELAVRALDNLLDYQDYPVPAAKNATMNRRTLGVGVVNYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID
Sbjct: 522 YYLAKNGKKYSDGSANALTHQTFEAIQYYLMKASNELAKEKGACPKFHETTYSQGLMPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D++  +   RL WD L++ +K  GMRNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDLDQIC-SEPLRLDWDGLRQSIKQYGMRNSTLSALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              ++ VK++  G   ++   +    + +D ++  ++ D+  +DG               
Sbjct: 638 PRGHVSVKASKDG---ILKQVVPEYERLKDQYE--LLWDIPSNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897
                       ++     QK+IDQ  S N   D    E     +  + +    A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQTVSANTNYDPGKFEGGKVPMKLLLKDLLTAYKFGV 726

Query: 898 KTTYYLRSRSATS 910
           KT YY  +R   S
Sbjct: 727 KTLYYHNTRDGAS 739


>gi|227494220|ref|ZP_03924536.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
 gi|226831954|gb|EEH64337.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
          Length = 718

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 197/662 (29%), Positives = 299/662 (45%), Gaps = 75/662 (11%)

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE 332
           DFD +       Y + F F  +LG    Y  Y L   +G R    + F  RV+M +AL  
Sbjct: 85  DFDFIKSLFKRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVSM-VALYL 141

Query: 333 TEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390
               K   E+  + + +  F  +TPT  N+G R   +L SCFL  V D++  I   +   
Sbjct: 142 ARGNKEVAEYLVDEILAGRFQPATPTFLNAGKRARGELVSCFLLRVEDNMESIARGINSA 201

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S G++P +K+  D     NQ G R+GA   
Sbjct: 202 LQLSKRGGGVALSLSNLREAGAPIKRIENQSSGIVPVMKLLEDAFSYANQLGARQGAGAV 261

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+ +FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+
Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNEDMYLFSP---YDV 318

Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YG  F EI+  E Y    + G I+  +KI+A   ++ +  + FE+G+P+I F+D  N
Sbjct: 319 ERVYGVPFTEISVTEKYREMVEDGRIRK-KKINARRFFQTIAEIQFESGYPYIVFEDTVN 377

Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQF 616
             +P +  G +  SNLC+EI       T N     + V     CNLGS+N+         
Sbjct: 378 RENPIK--GRITMSNLCSEILQVSEASTYNEDLTFSHVGKDISCNLGSLNIA-----KAV 430

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D    A T+ TA+R L  V D+ N  +    ++ N    AIGLG M     L    I Y 
Sbjct: 431 DSPDFALTVETAIRGLTAVSDLSNISSAPSIERGNRMSHAIGLGQMNLHGFLARERIFYG 490

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVR 733
           S EA++  +     +++ AI AS ++A+ERG ++  F+ S +  G +    I G      
Sbjct: 491 SEEALDFTNMYFYAVTYQAIKASTKIAKERGESFHGFEESKYYTGEYFTKYIEGEWVPTT 550

Query: 734 D---ELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           D   E+    T  LP    W +L   V+  GM + N  AI PT +I+ I   + SI P  
Sbjct: 551 DRVKEIFAGSTIYLPTPQDWKDLAAEVRENGMYHQNLQAIPPTGSISYINYSTSSIHPIV 610

Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + + K    G       ++ NE                       N+E   D      
Sbjct: 611 SKIEIRKEGKIGRVYYPAPYMTNE-----------------------NLEYYQD------ 641

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+EI P  +I++ +   + +DQ  SL L Y D  S + L+  Y  AW  G+KT YY+R
Sbjct: 642 --AYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVSTRDLNKSYIYAWRKGIKTMYYMR 699

Query: 905 SR 906
            R
Sbjct: 700 IR 701


>gi|45686076|ref|YP_003839.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum virus]
 gi|37722500|gb|AAP33245.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum stebbensi
           virus]
          Length = 565

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 174/592 (29%), Positives = 260/592 (43%), Gaps = 98/592 (16%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           K K A +  +      F  S+P L + +G+  P   SCFL  VPD + G+     E   L
Sbjct: 40  KPKLAEKLRDYACKGWFGYSSPILTSVTGSGLPI--SCFLLYVPDTIEGLVDHTSELRWL 97

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+G+  AY+ 
Sbjct: 98  SVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMS 150

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EF+ +R  TGD  R+  +++    I D+FM  V +   W L  P   +  H  
Sbjct: 151 ISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDVFMMCVERGENWDLVDPKSGAVAH-- 208

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRS 571
                                     +SA  LW ++L   F TG P++ F D  N  +  
Sbjct: 209 -------------------------TVSARELWERILETRFRTGEPYLNFIDAANRGLHP 243

Query: 572 PQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
             +  G+ +  SNLC EI L ++++ TAVC L S+NL       ++D  +    +   V 
Sbjct: 244 ALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVE 297

Query: 631 VLDNVIDI--------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           +LDNVI            HT  +A +S    R+IGLG MG+   L    IP+ S EAV +
Sbjct: 298 MLDNVIQTFVDEAPLKTPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRL 356

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
                  I   A+ A+  LA+ERG      G                             
Sbjct: 357 TGIIFGGIKSAAVRATRALAKERGEAPDLTG----------------------------- 387

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
                         G+RN++ +A+AP A  A + G S S++P     YV     G    V
Sbjct: 388 -------------CGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAV 434

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   +++ A+ 
Sbjct: 435 NPYLKRDLESLGLDTEKVWDSIVLNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVKQAAE 494

Query: 863 RQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR+ +  +  K
Sbjct: 495 RQRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLRTCAGRTGHK 546


>gi|18656499|gb|AAL77800.1|AF389451_7 ribonucleoside-diphosphate reductase alpha chain [Tiger frog virus]
          Length = 565

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%)

Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  S+P L + +G+  P   SCFL  VPD + G+     E   L+   GG+   W  VRG
Sbjct: 56  FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A       KS G IPFL   +    A  QG  R+G+  AY+   H D+ EF+ +R  T
Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD  R+  +++    I D FM+ V +   W L  P   +  H                  
Sbjct: 167 GDVNRKNLNIHHGVNITDAFMRCVERGENWDLVDPKSGAVAH------------------ 208

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586
                     +SA  LW ++L   F TG P++ F D  N  +    +  G+ +  SNLC 
Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638
           EI L ++++ TAVC L S+NL       ++D  +    +   V +LDNVI          
Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             HT  +A +S    R+IGLG MG+   L    IP+ S EAV +       I   A+ A+
Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKCRIPFDSEEAVRLTGIIFGGIKSAAVRAT 372

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA+ERG      G                                           G+
Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +L+   L  E
Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q QSLNL+  
Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905
             + K  L  ++R AW  G K  YYLR+
Sbjct: 511 MGADKTNLSDVHRLAWKSGCKGLYYLRT 538


>gi|37526940|ref|NP_930284.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786373|emb|CAE15426.1| ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide
           reductase 1) (B1 protein) (R1 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 763

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 185/673 (27%), Positives = 296/673 (43%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHRVVNWAADGLKNVSVSQVELRSQIQFYDGIKTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +S  LI  + P+Y  + AR  +  LR++     ++ P    H        +Y    + + 
Sbjct: 65  ASADLISGDAPDYQYLAARLAIFNLRKKAYGQ-FEPPSLYDHVSRMVKMGKYDKHLLADY 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            K     E M +F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 124 SKEEF--EQMNEF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSGYPKETRLDYIRRFYDAASTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     EFE  Y  YE+ ++  +    +++ AV L+  M+   
Sbjct: 351 EEITLFSPSDVPGLYEAFFADQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ + 
Sbjct: 467 FNLGA-----IENLDELEELATLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + +G+ PID
Sbjct: 522 YYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSKGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L  N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P
Sbjct: 582 T---YKKALDTLT-NEPLHYDWEALRNEIKQYGLRNSTLSSLMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
               + +K++  G
Sbjct: 638 PRGYVSIKASKDG 650


>gi|253989036|ref|YP_003040392.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780486|emb|CAQ83648.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Photorhabdus
           asymbiotica]
          Length = 763

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 212/802 (26%), Positives = 341/802 (42%), Gaps = 85/802 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +V  A  GL++VS   V   +    YD +  SD+   +I 
Sbjct: 5   LLVTKRDGHKERIDLDKIHRVVAWAADGLKNVSVSQVELRSQIQFYDSIKTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++               E   LY ++  R +E G
Sbjct: 65  AAADLISGDAPDYQYLAARLAIFNLRKKAYG----------QFEPPALY-DHVSRMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLADYSKEEFEQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSSYPKETRLDYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R +G+ I        G IPF K       
Sbjct: 231 DDSLDSINATSSAIVKYVSQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     EFE  Y  YE+ ++  +    +++ AV L+  M+   
Sbjct: 351 EDITLFSPSDVPGLYDAFFTNQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L +
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ + 
Sbjct: 467 FNLGA-----IENLDELEELAILAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + QG+ PID
Sbjct: 522 YYLAKHGARYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L  N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P
Sbjct: 582 T---YKKTLDTLT-NEPLHYDWETLRSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G    V    V E  +R   D  ++  +  +DG               
Sbjct: 638 PRGYISIKASKDGILRQV----VPEY-ERLKGDYELLWQMPGNDG--------------- 677

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGL 897
                       ++     QK+IDQ+ S N   D    PSGK  ++ + +    A+  G+
Sbjct: 678 -----------YLQLVGIMQKFIDQSISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGV 726

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY  +R      +  L+ V
Sbjct: 727 KTLYYHNTRDGAEDVQDDLEEV 748


>gi|167044534|gb|ABZ09208.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG6N3]
          Length = 890

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 170/642 (26%), Positives = 300/642 (46%), Gaps = 58/642 (9%)

Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337
           A  LK    F++++ +G   L   +F  +    +E+ +   M+V+    L     +K   
Sbjct: 193 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 252

Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              R  E+Y L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI     + A++ 
Sbjct: 253 YADRISEYYELMTSQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 312

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 313 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 372

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513
           WH D+E+F+  +   G       +++   W  D +   V    G +TL SP +       
Sbjct: 373 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 422

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571
                          +  GEI     I  +A         +++  P + F D  N  +  
Sbjct: 423 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 462

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626
            +   G + ++N C E +L         CNLGSI   NL+   A+ Q  FD+ +    I 
Sbjct: 463 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 518

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  +   + 
Sbjct: 519 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E   +      W
Sbjct: 579 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 630

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L ++++  G+RN     +APT T++ +   S  ++P++  ++ K    G F   N   
Sbjct: 631 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 690

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I     + + S  Q W
Sbjct: 691 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWTDHLLAQSVWQDW 750

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I  A +  + + ++ S + +   Y  A  MGLK     R  S
Sbjct: 751 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 792



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A        +I++ D +       + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDKELAIKLSDAV-------LIKLTEHGFS 71

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R
Sbjct: 72  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 112


>gi|304414249|ref|ZP_07395617.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283463|gb|EFL91859.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 762

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 214/799 (26%), Positives = 335/799 (41%), Gaps = 101/799 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +V+ A  GL +VS   V   ++   YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGRKERINLDKIHRVVDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++     ++ P    H        +Y    + + 
Sbjct: 65  AAADLISTDAPDYQYLAARLAVFHLRKKAYGQ-FEPPPLFEHVSKMVAMKKYDQHLLADY 123

Query: 264 VKARLLH-ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             A     ES +D           + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 124 SAAEFAEMESFID-----------HWRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L      +E R      FYN +S+F     TP +  +G R P  Q SSC L  
Sbjct: 173 YILVAACL-FSSYPRESRLDYVKRFYNAISTFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  A            G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINAASSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLT 551
               TLFSP +V  L+D +     EFE  Y  YE+ Q  R +     +I AV L+  M+ 
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQTEFERLYMKYEQDQTIRQQ-----RIKAVDLFSLMMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L
Sbjct: 405 ERASTGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTQPLNDINDETGEIALCTL 464

Query: 603 GSINLLAHFANNQFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            + NL A         D+   L      AVR LD ++D   + I  A+  +   R +G+G
Sbjct: 465 SAFNLGA--------IDRLEELEELATLAVRALDALLDYQDYPIAAARNGSLGRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPE----AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           ++     L    + Y++ +    A  +   + E I ++ + AS +LA+E+GA   F  + 
Sbjct: 517 VINLAYYLAKNGVGYSNADLKKNANSLTHRTFEAIQYYLLKASNDLAREKGACPWFDQTT 576

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + QG+ PID+     +  DE+  N    L W+ L++ +K  G+RNS   A+ P+ T + I
Sbjct: 577 YAQGLLPIDT---YKKYLDEIC-NEPLHLDWEGLRQNIKQWGLRNSTLSALMPSETSSQI 632

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              +  I+P    + +K++  G    VV  +   +   + LWD                 
Sbjct: 633 SNATNGIEPPRGYVSIKASKDGILRQVVPEYERLKEHYQLLWD----------------- 675

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--- 891
             IP++   +                   QK++DQA S N   D           +Q   
Sbjct: 676 --IPNNDGYLQLVGI-------------MQKFVDQAISANTNYDPTRFSDNKVPMKQLLK 720

Query: 892 ----AWLMGLKTTYYLRSR 906
               A+ +G+KT YY  +R
Sbjct: 721 DLLTAYKLGIKTLYYHNTR 739


>gi|311278370|ref|YP_003940601.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747565|gb|ADO47317.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 714

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 197/661 (29%), Positives = 304/661 (45%), Gaps = 82/661 (12%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           F F+ +LG    Y  Y L   +G R     P    M VA+ LA  +   E  A +  + +
Sbjct: 97  FQFQTFLGAWKFYTSYTLKTFDGKRYLEHFPDRVVM-VALTLAQGD---EALARQLTDEM 152

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 153 LSGRFQPATPTFLNCGKMQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 212

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 213 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDT 272

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-E 523
           ++   D++ R   ++    IPD+  +   +NA   LFSP    D+  LYGK F +IA  E
Sbjct: 273 KRENADEKIRIKTLSLGVTIPDITFRLARENARMALFSP---YDVERLYGKAFGDIAVTE 329

Query: 524 NYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            YE+      +   RK  ISA   ++ +  + FE+G+P+I F+D  N  SP    G ++ 
Sbjct: 330 MYEQLVADARV---RKTWISAREFFQTLAEIQFESGYPYIMFEDTVNRASPV--AGRINM 384

Query: 582 SNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC EI  +NS+SE               CNLGS+N +AH      D      T+ TAV
Sbjct: 385 SNLCAEILQVNSASEFDENLDYARVGRDISCNLGSLN-IAH----TMDSPDFGRTVATAV 439

Query: 630 RVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D++    +   +  N    AIGLG M     L    I Y SPEA+E  +    
Sbjct: 440 RALTAVSDMSHIRAVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALEFTNLYFC 499

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMN 739
            I++HA++ S+ LA+ERG +++ F  S +  G +    +         ++  +     + 
Sbjct: 500 AITWHALNTSMLLARERGQSFAGFAQSRYASGEYFAAYLEGDWQPKTQVVRTLFQRAGIT 559

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798
             +R  W +L+  V   G+ N N  AIAPT +I+ I   + SI P    + + K   +G 
Sbjct: 560 LPTRDMWRQLRDAVMRYGIYNQNLQAIAPTGSISYINHATSSIHPVASKIEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                              D+L  ++  A++I P  +I+
Sbjct: 620 VYYPAPFMTN------------------------------DNL-HLYQDAYDIGPEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   K +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++
Sbjct: 649 TYAEATKHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIRLRQ-LALEGTEIE 707

Query: 918 G 918
           G
Sbjct: 708 G 708


>gi|49237335|ref|YP_031616.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
 gi|47060153|gb|AAT09697.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
          Length = 565

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%)

Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  S+P L + +G+  P   SCFL  VPD + G+     E   L+   GG+   W  VRG
Sbjct: 56  FGYSSPILTSVTGSGLP--ISCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A       KS G IPFL   +    A  QG  R+G+  AY+   H D+ EF+ +R  T
Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD  R+  +++    I D FM+ V +   W L  P   +  H                  
Sbjct: 167 GDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKSGAVAH------------------ 208

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586
                     +SA  LW ++L   F TG P++ F D  N  +    +  G+ +  SNLC 
Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDTANRGLHPALKRKGLKIRGSNLCN 259

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638
           EI L ++++ TAVC L S+NL       ++D  +    +   V +LDNVI          
Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLK 313

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             HT  +A +S    R+IGLG MG+   L    IP+ S EAV +       I   A+ A+
Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRGIKSAAVRAT 372

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA+ERG      G                                           G+
Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +L+   L  E
Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q QSLNL+  
Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRS 905
             + K  L  ++R AW  G K  YYLR+
Sbjct: 511 IGADKTNLSDVHRLAWKSGCKGLYYLRT 538


>gi|240849860|ref|YP_002971248.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
 gi|240266983|gb|ACS50571.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
          Length = 716

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 195/676 (28%), Positives = 303/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   ++L E + DF  +       Y   F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKVLFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA      +  A  F + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 128 YEDRVCLVALYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFS     D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601
           FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E               CN
Sbjct: 361 FESGYPYILFEDTANRSNPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +  F       T+ +AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIAKAMESPDF-----GQTVESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HAI AS  +A+ER   +S F+ S +  G
Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRASNLIARERQEMFSGFEKSAYADG 533

Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I        A V++  A N      +  W ELKK V   G+ N N  A+ PT +
Sbjct: 534 RFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSIYYVRLR 699


>gi|254505919|ref|ZP_05118064.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219551142|gb|EED28122.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 710

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 187/671 (27%), Positives = 309/671 (46%), Gaps = 70/671 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332
           D + + L  D  Y+  F F  +LG    +  Y L     +  + + F  RV M  L L  
Sbjct: 77  DREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALTLAR 135

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
            +K   A++    + S  F  +TPT  NSG +   +L SCFL  + D++  I  A+  + 
Sbjct: 136 GDK-AFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSL 194

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L++  GG+    + +R  GA I G   +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 195 QLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 254

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+ +FLD ++   D++ R   ++    IPD+ ++   QN    LFSP +V  ++
Sbjct: 255 LNAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVY 314

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  ++ E Y    D   I+   KISA  L++ +  + FE+G+P++ F+D  N  +
Sbjct: 315 GVPFSEISVS-EKYYEMVDDPRIRK-SKISARGLFQTLAEIQFESGYPYLMFEDTVNAAN 372

Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G ++ SNLC+EI  +N +S                CNLGSIN+         D  
Sbjct: 373 PIK--GRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNLGSINIA-----KALDGG 425

Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            LA T+  ++R L+ V +++   ++   ++ N    AIGLG M     L    I Y S E
Sbjct: 426 HLAHTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQMNLHGFLAREQIHYDSEE 485

Query: 679 AVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLL 729
           AV+          +H ++AS +LAQE+   +  F+ S +  G F    +        G++
Sbjct: 486 AVDFTRAYFATTLYHCLTASNKLAQEKQQVFVGFEHSQYATGEFFAKYLQQDYSPRTGIV 545

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           A + + L M   S   W +L+ +V   G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 546 AALFERLDMQVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSISYINDATASIHPVTAKV 605

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K    G       +L N+                       N+E   D        A
Sbjct: 606 EIRKEGKIGRVYFPAPYLSND-----------------------NLEYFKD--------A 634

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I+  +   + +DQ  SL L+  DE + + ++     AW   +KT YY+R R 
Sbjct: 635 YDIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQIYAWKKKIKTLYYIRMRQ 694

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 695 -KALEGTQVEG 704


>gi|259907949|ref|YP_002648305.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963571|emb|CAX55061.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
          Length = 761

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 190/677 (28%), Positives = 295/677 (43%), Gaps = 55/677 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259
           S+  LI ++ P+Y  + AR  +  LR++     ++ P    Q     EM    P     Y
Sbjct: 65  SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
             E        E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE+      I+  R + AV L+  M+
Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKD---DSIRKLR-VKAVDLFSLMM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++
Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            F   L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ 
Sbjct: 519 NFAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578

Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID+       +D  A+ N    L W+ L++ VK  G+RNS   A+ P+ T + I   + 
Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSG 797
            I+P   ++ +K++  G
Sbjct: 634 GIEPPRGHISIKASKDG 650


>gi|163867488|ref|YP_001608687.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           tribocorum CIP 105476]
 gi|161017134|emb|CAK00692.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           tribocorum CIP 105476]
          Length = 716

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 194/676 (28%), Positives = 302/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + L E + DF  +       Y   F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKALFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     V++ LA      +  A  F + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 128 YEDRICLVSLYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  A+     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 185 VEDNMESIGRAVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFS     D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601
           FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E               CN
Sbjct: 361 FESGYPYILFEDTANRSNPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +  F       T+ +AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIAKAMESPDF-----GQTVESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HAI  S  +A+ER   ++ F+ S +  G
Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRVSNLIARERQEMFAGFEKSAYADG 533

Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I        A V++  A N      +  W ELKKRV   G+ N N  A+ PT +
Sbjct: 534 RFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKRVIKYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSIYYVRLR 699


>gi|319779631|ref|YP_004130544.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
 gi|317109655|gb|ADU92401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
          Length = 758

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 177/674 (26%), Positives = 302/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG     + +++  +++ A +GL +VS+  V   +    YDG+   D++  +I 
Sbjct: 6   ISVIKRDGRSEPLDLEKIHRVIDWAANGLDNVSTSQVELNSQIQFYDGIQTQDIQETIIK 65

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  +R++              H    LY ++    I++G
Sbjct: 66  AAADLISTDTPDYQYLAARLAMINIRKKAYG----------DHVPPHLY-DHVSSLIQKG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           V  + +       +   + + L ++RD+ F Y+ +  +  +Y +   ++G   E PQ  +
Sbjct: 115 VYDKNIISDYSKDEFEEMNSYLVHDRDWDFSYVAVMQMQGKYLVQNRVSGEIYETPQFLY 174

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  K  +  + K   EFY+  S+F     TP +  +G R P  Q SSC L    
Sbjct: 175 VLVAACLFAKYPKDVRLKYIREFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R  G+ I G   +  G IPF K        
Sbjct: 233 DSLDSINATSSAIVRYVSQRAGIGINAGRIRAEGSPIRGGEARHTGCIPFYKHFQTAVKC 292

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 293 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNRLMYERLVKGQ 352

Query: 498 GWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D + ++   FE  Y  YE+     +    R++ +  L+  ++    
Sbjct: 353 NITLFSPSDVPGLYDAFFEDQDTFEQLYTKYEQDPSIRK----RQVKSNDLFSMLMQERA 408

Query: 555 ETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
            TG  +I   D CN      P++    +  SNLC EITL        N    E A+C L 
Sbjct: 409 STGRIYIQNVDHCNTHGAFDPKK--APIRQSNLCLEITLPTKPLDDINDPKGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + I+ A+ S    R++G+G++ F
Sbjct: 467 AFNLGAIDS-----LDELEHLADLVVRALDALLDYQDYPIKAAQISTMNRRSLGVGVINF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+      I  ++ E I ++ + AS+ LA+E G   +F  + + QGV PI
Sbjct: 522 AYYLAKNGAKYSDGSGNAITHQTFEAIQYYLLKASMNLAKEFGPCPAFDETKYSQGVLPI 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D+       RL WD L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 DT---YKKSVDDFC-KEPLRLDWDTLRVDIVKYGLRNSTLTALMPSETSSQISNATNGIE 637

Query: 784 PSYQNLYVKSNMSG 797
           P    + VK +  G
Sbjct: 638 PPRGLITVKQSKDG 651


>gi|241206479|ref|YP_002977575.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860369|gb|ACS58036.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 716

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 303/664 (45%), Gaps = 81/664 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 84  FNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD 143

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 144 ---ESLARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 200

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 201 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 260

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+ 
Sbjct: 261 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVE 317

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y   AD   I   +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 318 RVYGVPFTEISVTEKYREMADDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 376

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P    G V  SNLC+EI   S + E               CNLGS+N+ A  A +  D
Sbjct: 377 ANPI--AGRVSMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSVD 432

Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S
Sbjct: 433 FGK---TIETSIRALSAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 489

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            E V+  +     ++++AI AS  LA ERGA +  F+ S +  G +       L E   E
Sbjct: 490 EEGVDFTNIYFYTVTYYAIRASNLLAVERGASFKGFENSKYASGDYFDKYTDRLWEPATE 549

Query: 736 L--AMNRTS--RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              A+  TS   +P    W  LKK V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 550 RVKALFETSGIHIPTQEDWVALKKAVMASGLYNQNLQAVPPTGSISYINHSTSSIHP--- 606

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843
                             +V++++ R              +G IG +      + +D   
Sbjct: 607 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLD 635

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 636 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYY 695

Query: 903 LRSR 906
           +R R
Sbjct: 696 IRLR 699


>gi|283835590|ref|ZP_06355331.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068802|gb|EFE06911.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 705

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 199/660 (30%), Positives = 311/660 (47%), Gaps = 80/660 (12%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGD-ETLAMQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G R   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+  LYGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDVAFRLAKENAQMALFSP---YDVERLYGKPFGDIAVSER 321

Query: 525 Y-ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           Y E  AD    +V +K I+A   ++++  + FE+G+P+I F+D  N  +P    G ++ S
Sbjct: 322 YDELLADE---RVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRANPI--AGRINMS 376

Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI  +NS+S                CNLGS+N+ AH      D      T+ TAVR
Sbjct: 377 NLCSEILQVNSASTYDDALGYTQIGHDISCNLGSLNI-AH----TMDSPDFGRTVETAVR 431

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D++  H++   +  N    AIGLG M     L    I Y SPE ++  +     
Sbjct: 432 GLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYT 491

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNR 740
           I++HA++ S++LA+ERG  ++ F  S +  G +       D     A+VR   A   +  
Sbjct: 492 ITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQGDWQPKTAKVRALFAASGITL 551

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 552 PTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKIGRV 611

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ NE       + A+  D                        A+EI P  +I++
Sbjct: 612 YYPAPFMTNE-------NLALYQD------------------------AYEIGPQKIIDT 640

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 641 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|322421033|ref|YP_004200256.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320127420|gb|ADW14980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 565

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/590 (28%), Positives = 266/590 (45%), Gaps = 83/590 (14%)

Query: 299 QILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFH 350
           ++L  RY L +  G  IE P+  F R+A  +A  E          E+R   F +LL+   
Sbjct: 9   KVLQARYLLKNEEGEVIESPEEMFRRLARSIAAVEKSYGADPGLWEER---FLDLLTGLR 65

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++P + N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++ +R  
Sbjct: 66  FLPNSPAIMNAGKPAGQLAACFVLPVEDSMSGIFETLKNAALILQSGGGTGFSFSRLRPR 125

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ ++K  G
Sbjct: 126 ADLVRSTGGIASGPVSFMKIYNTATDIIKQGGARRGANMGILRVDHPDIVEFIRVKKGAG 185

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +      + N +  + DLFM+ ++++  + L +P                      + A 
Sbjct: 186 E----LANFNISVAVTDLFMEELSRDGSYDLVNP-------------------RSGKVAG 222

Query: 531 RGEIK-VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           R   K VF +I A A W        ETG P + F D  N  +P   +G   S+N C E  
Sbjct: 223 RARAKEVFDEIVASA-W--------ETGDPGMIFIDRINRDNPTPGIGSFESTNPCGEQP 273

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         C LGS+NL  +  + + D + L   +  AVR LD+ ID N + +   +  
Sbjct: 274 LLPYE----ACVLGSLNLARYVGSGELDLESLGGDVALAVRFLDDTIDANRYPLPAIEAM 329

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPY  P A  +A   M+FI   A +AS  LA+ERG + 
Sbjct: 330 HKRNRKIGLGVMGWADLLIDLGIPYNDPRAFALAGSVMQFIRDRARNASAALAEERGVFP 389

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F GS++D    P                             RV     RN+    IAPT
Sbjct: 390 NFPGSVYDAPGMP-----------------------------RV-----RNATTTTIAPT 415

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            T+A I   S  I+P +   Y +  + G+    N   +   K+   + E ++  +K   G
Sbjct: 416 GTLATIADCSSGIEPLFALAYRRLILEGELVETNRHFIEIAKREGFYSEELLEGVKVT-G 474

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           ++   E +P+  + +  TA EI P   IE     Q++ D A S  + L E
Sbjct: 475 NLQGREEVPERYRALFRTALEIPPEDHIEMQRAFQRFTDNAVSKTVNLPE 524


>gi|116253996|ref|YP_769834.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258644|emb|CAK09748.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 707

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 193/667 (28%), Positives = 302/667 (45%), Gaps = 87/667 (13%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 75  FNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD 134

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
               +  VE    + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 135 EALARDMVE---EIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 191

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 192 QLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 251

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+ 
Sbjct: 252 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVE 308

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y   AD   I   +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 309 RVYGVPFTEISVTEKYREMADDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 367

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P    G +  SNLC+EI   S + E               CNLGS+N+ A  A +  D
Sbjct: 368 ANPI--AGRISMSNLCSEILQVSEASEYHDDLSYKHLGKDISCNLGSLNIAA--AMDSAD 423

Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S
Sbjct: 424 FGK---TIETSIRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 480

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PID 724
            E V+  +     +++HAI AS  LA ERG ++  F+ S +  G +             +
Sbjct: 481 EEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYASGEYFDKYTDRLWEPATE 540

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +  L E  D   ++  ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 541 KVKALFETAD---IHIPTQEDWAALKKLVMASGLYNQNLQAVPPTGSISYINHSTSSIHP 597

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDD 840
                                +V++++ R              +G IG +      + +D
Sbjct: 598 ---------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTND 623

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
               +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 624 NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKT 683

Query: 900 TYYLRSR 906
            YY+R R
Sbjct: 684 IYYIRLR 690


>gi|152997007|ref|YP_001341842.1| ribonucleotide-diphosphate reductase subunit alpha [Marinomonas sp.
           MWYL1]
 gi|150837931|gb|ABR71907.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           sp. MWYL1]
          Length = 754

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 208/799 (26%), Positives = 339/799 (42%), Gaps = 105/799 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +GT  + N +++  ++  A  GL +VS   V  +     ++G+  +D+   LI 
Sbjct: 4   LTVTKRNGTTENINLEKIHKVIAWAAEGLDNVSVSQVELKARIQFFEGIRTTDIHETLIK 63

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR++     ++ P    H +            +E+ 
Sbjct: 64  SAADLISESTPDYQYLAARLAIFHLRKKAFGD-FEPPHLYKHVK----------NLVEQK 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + D   L   L + RD  F Y  ++ L  +Y +   + G+  E PQ  +
Sbjct: 113 RYDAQLLEKYTEEDFNELNTFLDHSRDMDFSYAAVKQLEGKYLVQNRVTGAIYESPQFIY 172

Query: 322 MRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  +  +KE+  +   FY+ +S F     TP +  SG R P  Q SSC L    
Sbjct: 173 ILVAACLFAEYDKKERLNLIRRFYDAVSKFKISLPTPIM--SGIRTPTRQFSSCVLIECG 230

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 231 DSLDSINATSSAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKS 290

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +  
Sbjct: 291 CSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGG 350

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTM 552
             TLFSP +V  L+D +    +EF+  Y  YE+          RK  I A  L+    + 
Sbjct: 351 NITLFSPSDVPGLYDAFFADQEEFDRLYTMYEQDPS------IRKQTIKATELFTLFASE 404

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI L        +    E A+C L 
Sbjct: 405 RASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLNSIDDKEGEIALCTLS 464

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    ++     L       VR LD+++D   + I  A+++    R +G+G++ +
Sbjct: 465 AFNLGALENLDE-----LEELAELIVRALDSLLDYQNYPIPAAQRATELRRTLGVGVINY 519

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A E+  ++ E I +  + AS +LA+E G   +F  + + +G+ PI
Sbjct: 520 AYYLAKNGVKYSDGSANELTHKTFEAIQYFLLKASNKLAKEFGPCLAFNETTYSKGILPI 579

Query: 724 DSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS     +  V +EL  +      W+ L+  + T G+RNS   A+ P+ T + I   +  
Sbjct: 580 DSYKKEIDNIVSNELFYD------WETLRNDIVTHGLRNSTLTALMPSETSSQISNATNG 633

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + +K++  G            LKQ                  +   ER+ ++ 
Sbjct: 634 IEPPRGFVSIKASKDGI-----------LKQ-----------------VVPEFERLKEN- 664

Query: 842 KKIHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYR 890
                  +E+  +W I S           QK++DQA S N   D    E     +  I +
Sbjct: 665 -------YEL--LWTIPSNDGYLQLVGIMQKFVDQAISANTNYDPQKFESQKVPMKVILK 715

Query: 891 Q---AWLMGLKTTYYLRSR 906
               A+ +G+KT YY  +R
Sbjct: 716 DLLTAYKLGVKTLYYHNTR 734


>gi|121602719|ref|YP_988675.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           bacilliformis KC583]
 gi|120614896|gb|ABM45497.1| ribonucleoside-diphosphate reductase, alpha subunit [Bartonella
           bacilliformis KC583]
          Length = 716

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 196/686 (28%), Positives = 315/686 (45%), Gaps = 78/686 (11%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + L E + DF  +       Y   F F  +LG    Y  Y L   +G+R +E 
Sbjct: 69  IEEGYYEKALFE-LYDFSFIKRLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGTRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  V+    + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 128 YEDRVCLVALYLAQGNKDFAESCVD---EIMTGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFSP    D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNPKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-ETAV----------CN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI  +N +SE ET +          CN
Sbjct: 361 FESGYPYILFEDTANRANPV--AGRINMSNLCSEILQINEASELETDLGYRTVGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     ++ F       T+ TAVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIAKAMDSSDF-----GRTVETAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HA+ AS  +A+ER   ++ F+ S +  G
Sbjct: 474 MNLHGFLAREKIYYGSPEAIDFTNIYFYTVTYHALRASNLIARERQEKFAGFEKSAYADG 533

Query: 720 VFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I         L+ E+     +   ++  W +LK+ +   G+ N N  A+ PT +
Sbjct: 534 CFFEKYIKREWKPQFLLVQEIFARNNILIPTQGDWKKLKELIAKYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR----SATSVE 912
            AW  G+K+ YY+R R    S T VE
Sbjct: 684 YAWKKGIKSIYYIRLRQKALSGTEVE 709


>gi|110642800|ref|YP_670530.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|110344392|gb|ABG70629.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 536]
          Length = 701

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 192/658 (29%), Positives = 306/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A +  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLAAQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A  E 
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISER 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ + H++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 549

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638

Query: 862 RRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL  L+LD  + + +D     AW  G+KT YY+R R   ++E + ++G
Sbjct: 639 ETTRHVDQGLSLTLLFLDTATTRDIDKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|322514735|ref|ZP_08067761.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119330|gb|EFX91446.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 756

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 211/800 (26%), Positives = 343/800 (42%), Gaps = 107/800 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +    G    F+  ++  ++  A  GLQ+VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY----FCRY 259
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y       Y
Sbjct: 65  AAADLISTETPDYQYLAARLAMFHLRKKAYGD-FTPPHLFTHIKKLVALGKYDQALLTDY 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
            E+  + +L++E ++            + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 124 TEQ--EWQLMNEFLV------------HSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L  K  +  +      FY+  SSF     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYLLVAACLFSKYPKATRLDYVKRFYDATSSFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
               D L  I      +A + KY     G+G +   +R LG+ I        G IPF K 
Sbjct: 228 IECGDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKH 284

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  
Sbjct: 285 FQSAVKSCSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGIEDNRCRHMDYGVQLNKLMY 344

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ +    TLFSP +V  L++ +  E   FE  Y  YE+     +    R + AV L+ 
Sbjct: 345 QRLIKGGEITLFSPSDVDGLYEAFFAEQDKFEQLYLQYEQDPTIRK----RSVKAVELFS 400

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            ++     TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A
Sbjct: 401 LLMQERASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIA 460

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL      N  +++ LA  +   VR LD ++D   + +E AK +    R++G+
Sbjct: 461 LCTLSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVEAAKHAALARRSLGI 515

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G++ +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + Q
Sbjct: 516 GVINYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQ 575

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           G+ PID+       + EL  +  ++ P    W+ L+  ++  G+RNS   ++ P+ T + 
Sbjct: 576 GILPIDN------YKKEL--DNLTQEPLHYDWESLRAEIQQFGLRNSTLSSLMPSETSSQ 627

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   +  I+P    + VK++  G    VV  +     +   LWD   I D+  +   +G 
Sbjct: 628 ISNATNGIEPPRGYVSVKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGI 684

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLD 886
           +                             QK+IDQA S N   D       +   K+L 
Sbjct: 685 M-----------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLL 715

Query: 887 FIYRQAWLMGLKTTYYLRSR 906
                A+  GLKT YY  +R
Sbjct: 716 ADLLTAYKYGLKTLYYQNTR 735


>gi|312162815|ref|YP_003933800.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
 gi|308096448|gb|ADO13788.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
          Length = 1048

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 188/661 (28%), Positives = 302/661 (45%), Gaps = 66/661 (9%)

Query: 290  DFAFEYLGLQ--ILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEK-------RA 339
            ++A +  GLQ  + Y+ ++L   G+ R+E     + R+A  LA    E  +       R 
Sbjct: 397  EYALKNRGLQSALKYEEFYLRPWGNGRLESVSQMYTRIAGALATGAREIPEIGTVALGRT 456

Query: 340  VE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENA 391
             E       F++ L S   + STP +   G R    SSC+L      D  G+  A+  N 
Sbjct: 457  GEWIDLFAYFFDALVSHAIVPSTPAMLYLGGRQRYTSSCYLVNPQRTDSAGVIDAITHNV 516

Query: 392  --MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              +LA++ G           +G  I   NG S  V+P LK+ +    A N G  R   VC
Sbjct: 517  GDILARHGG-----------IGLSIQSFNGGSS-VMPALKLLDSLVAAHNAGSHRPTGVC 564

Query: 450  AYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLF 502
             YLE WH DV   L +R    G++ RR  ++ +A W+PDLF KR+ +         WTLF
Sbjct: 565  VYLEPWHTDVMAVLRMRGLLAGEEARRCDNIFSAMWMPDLFFKRLIRYMEGERGVMWTLF 624

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                 S L   +G EFE  YE  E        ++  +  A A+ R   +    TG P++ 
Sbjct: 625  DGAAGSALSAHHGAEFERLYEKMEEAGGSALTRLPIQDLAFAIVRSAAS----TGSPFVM 680

Query: 563  FKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            FKD CN        G  +  SNLCTEI   + +  + VCNL S+NL     +  F +++L
Sbjct: 681  FKDACNRHYLYDTQGSAISCSNLCTEIVHPADARSSGVCNLASVNLAECVEDGAFSFERL 740

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +R  V +++ +ID      ++ ++ +   R++G+G+ G  +A   L +  +SPE  E
Sbjct: 741  RRAVRACVLMVNVMIDTTRTPNQRCQRGHDRLRSMGIGMQGLHTACLRLGLDMSSPEFRE 800

Query: 682  IADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  E  E +   A+ AS +L       ++ FK S++ +G F  +     A  R + +   
Sbjct: 801  LNAEIAEVMLLAAMQASNDLCVAGLPPFADFKRSVYSEGRFHWEG---FAHARPKHSDE- 856

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                 W  L++RV   G+RNS  +A+ PT + + +   S+   P + N++ K   +G+ T
Sbjct: 857  -----WARLRQRVVRHGLRNSQFIALMPTVSSSQVSESSEGFAPVFTNMFSKVGRAGE-T 910

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER-----IPDDLKKIHATAFEIDPMW 855
            +  + L+ E         A+   L   + +   + R      PD   +   TAFE D   
Sbjct: 911  LRPNLLLLEAVHEAFGGAALERALDRLEDAQWCVARAFPCLAPDHPLRRFKTAFEYDQTL 970

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
            LI+  + R  ++D +QS+ LY+ E S        L  +   A+  GLKT  YY + R AT
Sbjct: 971  LIDLCADRAPYVDHSQSMTLYVTEASDGTLPASALTRLLVHAYKRGLKTGMYYCKVRKAT 1030

Query: 910  S 910
            +
Sbjct: 1031 N 1031


>gi|310768142|gb|ADP13092.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 761

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 189/677 (27%), Positives = 295/677 (43%), Gaps = 55/677 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259
           S+  LI ++ P+Y  + AR  +  LR++     ++ P    Q     EM    P     Y
Sbjct: 65  SAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQVTRMVEMGKYDPHLLTDY 123

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMP 317
             E        E M  F        + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 124 SAEEF------EQMDGF--------IDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
           Q  ++ VA  L        +      FY+ +S+F     TP +  SG R P  Q SSC L
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIM--SGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 228 IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+
Sbjct: 288 AVKSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE+      I+  R + A+ L+  M+
Sbjct: 348 LKGEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKD---DSIRKLR-VKAIDLFSLMM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++
Sbjct: 464 LSAFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            F   L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ 
Sbjct: 519 NFAYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIM 578

Query: 722 PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID+       +D  A+ N    L W+ L++ VK  G+RNS   A+ P+ T + I   + 
Sbjct: 579 PIDTYK-----KDLDAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATN 633

Query: 781 SIDPSYQNLYVKSNMSG 797
            I+P   ++ +K++  G
Sbjct: 634 GIEPPRGHISIKASKDG 650


>gi|326204958|ref|ZP_08194810.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
 gi|325984887|gb|EGD45731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
          Length = 795

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 173/591 (29%), Positives = 279/591 (47%), Gaps = 83/591 (14%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVE--FYNLLSSFH 350
           +++L  RY     NG+ +E     F RVA  +A  +     EK   A+E  FY+++++  
Sbjct: 8   VKVLEKRYLEKDENGNLLEDCDGMFRRVAKAIASADAAYTDEKGLAAIEQEFYDMMANLE 67

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  ++ +R  
Sbjct: 68  FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFSFSRLRAK 127

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ EF+  +    
Sbjct: 128 GSAVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFISCKS--- 184

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQA 529
            D     + N +  I + FMK V  N  + L  P     +  L  KE F+I  E      
Sbjct: 185 -DNSEITNFNLSVGITEDFMKAVEHNLEYELLDPKTKEPVAKLNAKEVFDIIVE------ 237

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                                 M ++ G P I F D  N  +    +G + S+N C E  
Sbjct: 238 ----------------------MAWKNGEPGIIFLDRLNRDNVTPKLGEIESTNPCGEQP 275

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L         CNLGSINL  +   ++   D++KL +T+R AVR LDNVI++N + + +  
Sbjct: 276 LLPYE----ACNLGSINLYNMMDDSHKGLDFEKLENTVRKAVRFLDNVIEVNKYPLPEID 331

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R IGLG+MG+   L  L + Y S  A+++AD+ M FIS  A+ AS  LA+ +G 
Sbjct: 332 KMTRGTRKIGLGVMGWADTLCALGLAYNSQAAIDLADKVMSFISDIAMKASQNLAELKGV 391

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  ++ S++DQ                                   K I +RN+    IA
Sbjct: 392 FPFYEDSIYDQ-----------------------------------KGIKVRNATTTTIA 416

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I GVS  I+P +   Y+++ M + +   VN          + + E ++  +  
Sbjct: 417 PTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKGAALSGNFYSEELMKKIA- 475

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             G++ N+  +P  +++I  TA ++ P W ++  +  Q+  D A S  + L
Sbjct: 476 RVGTVKNMNEVPVQVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNL 526


>gi|49475006|ref|YP_033047.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           henselae str. Houston-1]
 gi|49237811|emb|CAF27006.1| Ribonucleotide reductase alpha-chain [Bartonella henselae str.
           Houston-1]
          Length = 716

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 195/676 (28%), Positives = 303/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + L E + DF  +       Y   F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKALFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA      +  A  F + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 128 YEDRICLVALYLA---QGNKALAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 185 VEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFS     D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI  +N +SE  A            CN
Sbjct: 361 FESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNEASELEADLTYRTVGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         D D    T+  AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIA-----KAMDSDDFGRTVEAAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HAI  S  +A+ER   +  F+ S +  G
Sbjct: 474 MNLHGFLAREQIYYGSPEAIDFTNIYFYIVAYHAIRVSNLIARERQKMFVGFEKSAYADG 533

Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I        + V++  A N      +  W ELKK V   G+ N N  A+ PT +
Sbjct: 534 SFFAKYIEQEWKPQFSLVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------DFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSIYYVRLR 699


>gi|218709885|ref|YP_002417506.1| ribonucleotide reductase r1 chain [Vibrio splendidus LGP32]
 gi|218322904|emb|CAV19081.1| ribonucleotide reductase R1 chain [Vibrio splendidus LGP32]
          Length = 710

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 172/593 (29%), Positives = 277/593 (46%), Gaps = 66/593 (11%)

Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  GG+    T +R 
Sbjct: 153 FQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNLRE 212

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++  
Sbjct: 213 QGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKREN 272

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD+ ++   QN    LFSP +V  ++ +   E  +  E Y    
Sbjct: 273 ADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHEMV 331

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           D   I+   K+SA  L++ +  + FE+G+P+I F+D  N  +P Q  G V+ SNLC+EI 
Sbjct: 332 DDPRIRK-GKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ--GRVNMSNLCSEIL 388

Query: 589 TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +N +S                CNLGS+N+         D  +L+ T+ TA+R L+ V +
Sbjct: 389 QVNEASNYDDDLNYSHVGRDISCNLGSVNIA-----KALDGGQLSQTVDTAIRALNAVSE 443

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           ++  +++   +K N    AIGLG M     L    I Y SPEA++        + +H + 
Sbjct: 444 MSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHCLV 503

Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747
           AS +LAQE +  +  F+ S +  G F    +      + ++  +  SRL         W 
Sbjct: 504 ASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSEWS 563

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFL 806
           ELK+ V + G+ N    AI PT +I+ I   + SI P    + + K    G       +L
Sbjct: 564 ELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKEGKIGRVYFPAPYL 623

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            N                        N+E   D        AF I P  +I+  +   + 
Sbjct: 624 NN-----------------------SNLEYFRD--------AFSIGPKAIIDVYAAATEH 652

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +DQ  SL L+  DE + + ++     AW   +KT YY+R R   ++E + ++G
Sbjct: 653 VDQGLSLTLFFDDEVTTRGINKAQIYAWKKKIKTLYYIRMRQ-KALEGTQVEG 704


>gi|148244628|ref|YP_001219322.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326455|dbj|BAF61598.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 758

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 203/806 (25%), Positives = 348/806 (43%), Gaps = 103/806 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   +G   S + +++  +V  A   L+ VS   V        +DG+   D+   +I 
Sbjct: 5   IKVTKRNGQQESIDMEKIHRVVHWASQDLKSVSVSQVEINAQLAFFDGIKTEDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  + P+Y  + AR  +  LR++   +    P           + E+  +  + G
Sbjct: 65  SAADLISTDIPDYQYLAARLSIFHLRKKAFKSFTPPP-----------FFEHIKKITDLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           +  + +    +  ++  L + + + RD  F Y+ ++ L  +Y +   + G   E PQ  +
Sbjct: 114 IYDKDILNKYLKEEIEILGSYIDHWRDMNFSYVAVKQLEGKYLVQNRVTGEIYESPQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           M V M L  +E E  KR      FY+ +S F     TP +  +G R P  Q SSC L   
Sbjct: 174 MLVGMCL-FQEYEVSKRMNTVKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIET 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            DDL  I        ++ KY     G+G +   +R +G+ I G      G IPF K  + 
Sbjct: 231 DDDLDSISATA---GVIVKYISQRAGIGINGGKIRAIGSPIRGGEATHTGCIPFYKHFHT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R 
Sbjct: 288 AVKSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRF 347

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRK 548
            ++   TLFSP +  DL++ +    +EF+  Y  YE+        + RK  I A  L+ K
Sbjct: 348 LKDGDITLFSPHDTPDLYNAFFADQEEFKRLYHKYEQNT------LIRKHTIKARELFSK 401

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
            +     TG  ++   D CN  S        +  SNLC EITL             E A+
Sbjct: 402 FIQERANTGRIYLQNVDHCNTHSAFNAKQAPIKQSNLCMEITLPTKPLYSIQDEQGEIAL 461

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C L ++NL A  + N+     L +     VR LD ++D   + I+ A+ ++   R +G+G
Sbjct: 462 CTLSAVNLGALDSLNE-----LETLTDIIVRSLDCLLDYQDYPIKAAELASKNRRTLGIG 516

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      L      Y+     ++   + E + ++++ AS  LA+E GA   F  + + QG
Sbjct: 517 VTNLAYYLAKNGAKYSDGSGNQLIHTTFEALQYYSLKASNTLAKELGACPLFFQTQYSQG 576

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PIDS     +   +  +    +  WD L++ + + G+RNS   A+ P  + + I   +
Sbjct: 577 IMPIDSYKKDIDAFCDFKL----KFDWDTLRQDITSKGLRNSTLTALMPCESSSQISNST 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K +  G    +V  + + + +   LW      D+K ++G         
Sbjct: 633 NGIEPPRGFVSIKQSKDGILKQIVPDYELLKNQYELLW------DIKDNEG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKK-------LDFI 888
                             ++     QK++DQ+ S N + D PS   G K       +D +
Sbjct: 678 -----------------YLQLCGIMQKFVDQSISTNTHYD-PSQFEGNKVPIKLFLMDLL 719

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914
             +A+  G+KT YY  +R   S + S
Sbjct: 720 --KAYKYGIKTLYYHTTRDGGSNDMS 743


>gi|315126540|ref|YP_004068543.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
 gi|315015055|gb|ADT68393.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
          Length = 760

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 206/795 (25%), Positives = 336/795 (42%), Gaps = 87/795 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++     ++ P+   H              +E+
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQ-FEPPRLFDH----------VTNMVEQ 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
                 L     + +L  L   L + RD  F Y  ++ L  +Y +   + G   E  Q  
Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L   +  ++ R      FY+ +S F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAASL-FSDYPRDTRIDYIKRFYDAVSLFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLSNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++     L      AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDE-----LEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +   + E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHRTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G   ++   +    + +D ++  ++ D+  +DG             
Sbjct: 636 EPPRGHISVKASKDG---ILKQVVPEYERLKDSYE--LLWDIPSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLM 895
                         ++     QK+IDQ  S N   D    E     +  + +    A+ +
Sbjct: 678 -------------YLQLVGIMQKFIDQTISANTNYDPNKYEGGRVPMKVLLKDLLGAYKL 724

Query: 896 GLKTTYYLRSRSATS 910
           G+KT YY  +R   S
Sbjct: 725 GVKTLYYHNTRDGAS 739


>gi|118602533|ref|YP_903748.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567472|gb|ABL02277.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 757

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 200/798 (25%), Positives = 347/798 (43%), Gaps = 99/798 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G   S + +++  +V  A   L+ VS   V        +DG+   D+   +I 
Sbjct: 5   IKVIKRNGQQESIDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++   +    P          L+ E+  ++ +  
Sbjct: 65  SAADLISIEVPDYQYLAARLTIFHLRKKAFKSFTPTP----------LF-EHIKKFTDLS 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           +  + +       ++  L   + + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 114 IYDKEILNKYSKEEIETLGAYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQLLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + + M L  +E E   R      FY+ +S F     TP +  +G R P  Q SSC L  V
Sbjct: 174 VLIGMYL-FQEYEASIRMDIVKRFYDAVSLFKISLPTPIM--AGVRTPIRQFSSCVLIEV 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL  I               G+G +   +R +G+ I G      G IPF K  +    
Sbjct: 231 DDDLDSISAGAGAIVKYVSQRAGIGINGGKIRAIGSPIRGGEAIHTGCIPFYKHFHTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R  ++
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKD 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLT 551
              TLFSP +V  L+D +    +EF+  YE YE+          RK  I A  L+ K + 
Sbjct: 351 DDITLFSPHDVPGLYDAFFANQEEFKRLYEQYEQNDS------IRKQAIKARELFAKFMQ 404

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               TG  ++   D CN  S        +  SNLC EITL             E A+C L
Sbjct: 405 ERANTGRIYLQNVDHCNTHSAFDAKQAPIKQSNLCMEITLPTKPLYSVQDEQGEVALCTL 464

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            ++NL A  + N+   + L   I   VR LD ++D   + I+ A+ S+ + R +G+G+  
Sbjct: 465 SAVNLGALDSLNEM--EALTDII---VRSLDCLLDYQDYPIKAAELSSKSRRTLGIGVTN 519

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y+     ++  ++ E + ++++ AS  LA+E G    F  + + QG+ P
Sbjct: 520 LAYYLAKNGVKYSDGSGNQLIHKTFEALQYYSLKASNTLAKELGVCPLFSQTQYSQGIMP 579

Query: 723 IDS----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           IDS    I    + + E        L WD L++ +K+ G+RNS   A+ P  + + I   
Sbjct: 580 IDSYKKDIDAFCDCKLE--------LDWDTLRQNIKSTGLRNSTLTALMPCESSSQISNS 631

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  I+P    + +K +  G   ++   +    + ++ ++  ++ D+K ++G         
Sbjct: 632 TNGIEPPRGFVSIKQSKDG---ILKQIVPEYERLKNQYE--LLWDIKDNEG--------- 677

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM--- 895
                             ++     QK++DQ+ S N++ D PS  + + +  + +LM   
Sbjct: 678 -----------------YLQLCGIMQKFVDQSISTNMHYD-PSQFEGNRVPMKLFLMDLF 719

Query: 896 -----GLKTTYYLRSRSA 908
                G+KT YY  +R  
Sbjct: 720 RAYKYGIKTLYYHTTRDG 737


>gi|225734495|gb|ACO25263.1| ribonucleoside-diphosphate reductase [Epizootic haematopoietic
           necrosis virus]
          Length = 565

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 169/568 (29%), Positives = 251/568 (44%), Gaps = 98/568 (17%)

Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  S+P L + +G+  P   SCFL  VPD + G+     E   L+   GG+   W  VRG
Sbjct: 56  FGYSSPILTSVTGSGLPI--SCFLLYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRG 113

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A       KS G IPFL   +    A  QG  R+G+  AY+   H D+ EF+ +R  T
Sbjct: 114 PSA-------KSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPT 166

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD  R+  +++    I D FM+ V +   W L  P   +  H                  
Sbjct: 167 GDVNRKNLNLHHGVNITDAFMRCVERGENWDLVDPKSGAVAH------------------ 208

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCT 586
                     +SA  LW ++L   F TG P++ F D  N  +    +  G+ +  SNLC 
Sbjct: 209 ---------TVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCN 259

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-------- 638
           EI L ++++ TAVC L S+NL       +++  +    +   V +LDNVI          
Sbjct: 260 EIHLPTAADRTAVCCLSSVNL------ERYNEWRETDLVECLVEMLDNVIQTFVDEAPLK 313

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             HT  +A +S    R+IGLG MG+   L    IP+ S EAV +       I   A+ A+
Sbjct: 314 TPHT-ARAVRSAAGERSIGLGAMGWARYLQKRRIPFDSEEAVRLTGIIFGGIKSAAVRAT 372

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA+ERG      G                                           G+
Sbjct: 373 RALAKERGEAPDLTG------------------------------------------YGV 390

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +L+   L  E
Sbjct: 391 RNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGLDTE 450

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q QSLNL+  
Sbjct: 451 EVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNLFFP 510

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRS 905
             + K  L  ++R AW  G K  YYLR+
Sbjct: 511 MGADKTDLSDVHRLAWKSGCKGLYYLRT 538


>gi|294661478|ref|YP_003579931.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
 gi|292660639|gb|ADE34887.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
          Length = 750

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 201/798 (25%), Positives = 355/798 (44%), Gaps = 80/798 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-TALIFS 205
           ++   G    F+ +++  +++ AC G  ++  +  L    + + DG++   ++  A+ ++
Sbjct: 7   VVKSSGVRQPFDKEKIYKVLKWACDG-HNIDVRAFLENVLELIRDGMTTKQIQRIAIKYA 65

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +  KEP++  V +   +  LR++V       P           + ++  + +E G  
Sbjct: 66  ADHISVKEPDWQYVASNLEMFALRKDVYGQFDPIP-----------FYDHIVKMVEAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
            + + E     D+      + +++DF F Y G Q L  +Y +     G   E PQ  FM 
Sbjct: 115 DKEILEKYSKQDIQVFERAIDHDKDFEFSYAGSQQLIGKYLVQDRDTGEIFETPQYAFML 174

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDD 379
           +AM L  +ET   +    V+FYN +S       TP +  +G R P  Q SSC +    D 
Sbjct: 175 IAMCLHQEETGLAQVTHIVDFYNAISDRKLSLPTPIM--AGVRTPTRQFSSCVVIESGDS 232

Query: 380 LYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L G   A+   + + KY     G+G +   +R +G+ I G      GVIPF K       
Sbjct: 233 L-GSLNAV--TSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    +  L  KR+   
Sbjct: 290 SCSQGGVRGGAATLYYPFWHLEVENLLVLKNNKGVEENRVRHLDYGVQLNQLMYKRLMNR 349

Query: 497 AGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              TLFSPD  +D L+DL+ +  + A+E      ++      ++I AV L++ +     +
Sbjct: 350 DYITLFSPDVANDRLYDLFYEADQTAFEELYESLEKDPTVRKKRIKAVDLFQLLAQERAQ 409

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---SEETAVCNLGSINLLAHFA 612
           TG  +I   +  ++         V  SNLC EI + +S    ++     +G   L+A   
Sbjct: 410 TGRKYIF--NTHHVNQQGSFTVPVRMSNLCCEIAIPTSPLDDDDKMAGEIGLCTLMAIVL 467

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +N  D  +     R AVR LDN++D   + ++ A K+    R++G+G+  + S L   + 
Sbjct: 468 DNA-DISEFPKLTRIAVRALDNLLDYQNYPVKAALKAKQ-RRSLGVGITNYASWLASNYC 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S    +   E ME   F+ + AS+ELA+ERGA   +  + + +G+ PID      + 
Sbjct: 526 DY-SEAYTDKVHELMEAFQFNLLVASMELAKERGACGLYNDTKYARGLLPID---WYCKT 581

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            DEL +       W+ L+ ++K  G+RNS   A+ P  + + +   +  I+P    + +K
Sbjct: 582 VDEL-VAPVYNCDWEWLRSQIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGLVSIK 640

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G +   N  + N+  Q D +D  ++ D+    G+ G +  +               
Sbjct: 641 SSKEGHY---NQVVPNQNNQIDFYD--LLWDMAKR-GNKGYLSHV--------------- 679

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL------DFIYRQAWLMGLKTTYYL 903
                   +  QK++DQ+ S N   D  +   GK        D +Y   +  G+KT YY 
Sbjct: 680 --------AVMQKFVDQSISANTNYDPANYEDGKVKTEDIIDDLLYANYY--GVKTLYYH 729

Query: 904 RSRSATSVEKSTLKGVDG 921
            +R     E+   +   G
Sbjct: 730 NTRDGAGDEEEAAEDCAG 747


>gi|307547023|ref|YP_003899502.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307219047|emb|CBV44317.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 728

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 188/667 (28%), Positives = 301/667 (45%), Gaps = 80/667 (11%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           D  Y   F F+ +LG    Y  Y L     R  + + F  RV M         E  A   
Sbjct: 104 DQAYALKFRFQSFLGAFKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLARGDEALARTL 162

Query: 343 YNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            + +    F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+ 
Sbjct: 163 VDEILHGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVA 222

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  
Sbjct: 223 FSLSNIRESGAPIKRIANQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLNVHHPDILR 282

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EI 520
           FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F +I
Sbjct: 283 FLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVERVYGVPFGDI 339

Query: 521 AY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y+   D   I+   K  A  L++ +  + FE+G+P++ F+D  N  +P    G +
Sbjct: 340 SVTEKYQEMVDDARIRK-TKTDARELFQTLAELQFESGYPYVLFEDTANRDNPI--AGRI 396

Query: 580 HSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           + SNLC+EI  +NS SE           E   CNLGS+N+         D     +++ T
Sbjct: 397 NMSNLCSEILQVNSPSEYDDDLDYRHTGEDISCNLGSLNIA-----RVMDSPDFGTSVET 451

Query: 628 AVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           AVR L  V ++ +  ++    ++N    AIGLG M     L   HI Y S E ++  +  
Sbjct: 452 AVRALSAVSEMSDIRSVPSIAEANARSHAIGLGQMNLHGFLAREHIHYGSEEGLDFTNIY 511

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS---------IGLLAEVRDEL 736
              I++HA+ AS  LA ERG  ++ F+ S +  G +  D             + E+ D  
Sbjct: 512 FYTITYHAVRASNRLAIERGERFAGFENSAYASGSY-FDKYTENEWQPRTQRVRELFDNA 570

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +R  W ELK  V   G+ N N  A+ PT +I+ I   + SI P            
Sbjct: 571 GIQIPTREDWRELKASVMQYGLFNRNLQAVPPTGSISYINHATSSIHP------------ 618

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852
                    +V++++ R              +G +G +      + DD +  +  A+EI 
Sbjct: 619 ---------VVSKIEIR-------------KEGKLGRVYYPAPYLNDDNQDYYRDAYEIG 656

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A ++
Sbjct: 657 PEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYVRLRQA-AL 715

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 716 EGTEVEG 722


>gi|152979131|ref|YP_001344760.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           succinogenes 130Z]
 gi|150840854|gb|ABR74825.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinobacillus
           succinogenes 130Z]
          Length = 756

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 182/673 (27%), Positives = 296/673 (43%), Gaps = 47/673 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  +L  ++  A  GL +VS   V   ++   Y+G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPLDLDKLHRVITWAAEGLHNVSVSQVELRSHIQFYEGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI K+ P+Y  + AR  +  LR++     ++ P    H +      +Y    + + 
Sbjct: 65  SAADLISKDAPDYQYLAARLSVFHLRKKAFGQ-FEPPHLYEHVKKLVEMGKYDQALLTD- 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   E M DF        L + RD  F Y   + L  +Y +   + G   E  Q  +
Sbjct: 123 -YGREEWEQMNDF--------LDHWRDMNFSYAATKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L   +  K  R      FY+  SSF     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAASL-FSQYPKATRLDYVRRFYDATSSFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGQIRALGSPIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +     +FE  Y  YE+     +    R + A+ L+  ++   
Sbjct: 351 GDITLFSPSDVPGLYDAFFADQDKFEQLYVQYEQDPAIRK----RSVKAIELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGS 604
             TG  +I   D  N  SP    V  V  SNLC EI L        N    E A+C L +
Sbjct: 407 ASTGRIYIHNVDHTNTHSPFDPSVAPVRQSNLCLEIALPTKPLQNINDEDGEIALCTLSA 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL         + D+L +    AVR LD ++D   + +  A++S+   R++G+G++ + 
Sbjct: 467 FNL-----GKLENLDELDNLADLAVRALDALLDYQDYPVAAARRSSLGRRSLGIGVINYA 521

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L   ++ Y++  A  +   + E I ++ + AS+ LA+E+G    F  + + QG+ PID
Sbjct: 522 YYLAKNNMRYSNGSANALTHRTFEAIQYYLLKASMNLAKEQGKCELFHETRYAQGILPID 581

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +     +  D L  +      W+ L+  ++  G+RNS   A+ P+ T + I   +  I+P
Sbjct: 582 T---YKKDVDGLT-DEPLHYDWETLRADIQKYGLRNSTVTALMPSETSSQISNATNGIEP 637

Query: 785 SYQNLYVKSNMSG 797
              ++ VK++  G
Sbjct: 638 PRGHISVKASKDG 650


>gi|320095250|ref|ZP_08026947.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977791|gb|EFW09437.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 718

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 201/689 (29%), Positives = 306/689 (44%), Gaps = 77/689 (11%)

Query: 260 IEEGV--KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-I 314
           +EEG   K  L   +M D   +Y      Y   F F  +LG    Y  Y L   +G R +
Sbjct: 71  VEEGYYEKHVLDQYAMEDIKALY---KQAYAHKFRFPTFLGAFKYYTSYTLKTFDGKRYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFL 373
           E  +   + V+M LA  + +    A  F + + +  F  +TPT  N+G     +L SCFL
Sbjct: 128 ERFEDRVVMVSMYLARGDVD---LAASFVDEIMTGRFQPATPTFLNAGKAARGELVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D
Sbjct: 185 LRVEDNMESIARGINSALQLSKRGGGVALQLTNLREAGAPIKKIQNQSSGVVPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N    LFSP +V  ++ +   E  +  E Y    D G I   +KI+A   ++ +  + 
Sbjct: 305 RKNEDMYLFSPYDVERVYGVPFSEIPVT-EKYHEMVDDGRIHK-KKINARRFFQTLAEIQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601
           FE+G+P+I F+D  N  +P +  G V  SNLC+EI       T N       V     CN
Sbjct: 363 FESGYPYIVFEDTVNRANPIK--GRVTMSNLCSEILQVSEASTYNEDLSYAHVGKDISCN 420

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         D    + TI TA+R L  V D+ +   +    + N    AIGLG 
Sbjct: 421 LGSLNIA-----KTMDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNAMSHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L   H+ Y S EA++  +     + F A+ AS  +A+ERG  +  F+ S +  G
Sbjct: 476 MNLHGYLAREHVHYGSEEALDFTNIYFMTVLFEAVRASCAIARERGERFEGFEDSAYASG 535

Query: 720 VF---PIDSIGLLAEVR-DELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    ID     A  +  EL    + R+P    W  L   V   GM N N  A+ PT +
Sbjct: 536 EFFRKYIDEAWEPATDKCRELLAASSIRVPTRDDWRALAADVARYGMYNQNLQAVPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + + K    G       ++ NE                     
Sbjct: 596 ISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMTNE--------------------- 634

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
             N+E   D        A+EI P  +I++ +   + +DQ  SL L Y D  + + L+  Y
Sbjct: 635 --NLEYYRD--------AYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSY 684

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             AW  G+KT YY+R R   ++E + ++G
Sbjct: 685 IYAWRKGIKTLYYMRLRQ-MALEGTEVEG 712


>gi|220929802|ref|YP_002506711.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|220000130|gb|ACL76731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulolyticum H10]
          Length = 795

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 283/599 (47%), Gaps = 99/599 (16%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAV---EFYNLLSSFH 350
           +++L  RY     NG+ +E  +  F RVA  +A  +   T+++  AV   EFYN++++  
Sbjct: 8   VKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADAAYTDEKGLAVIEHEFYNMMANLE 67

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  ++ +R  
Sbjct: 68  FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFSFSRLRAK 127

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +    
Sbjct: 128 GSAVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFISCKS--- 184

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQA 529
            D     + N +  I + FM+ V  N  + L  P     +  L  +E F+I  E      
Sbjct: 185 -DNSEITNFNLSVGITEDFMRAVEHNLEYELLDPRTKKPVAKLNAREVFDIIVE------ 237

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                                 M +E G P I F D  N  +    +G + S+N C E  
Sbjct: 238 ----------------------MAWENGEPGIIFLDRLNRDNVTPKLGEIESTNPCGEQP 275

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L         CNLGSINL  +   A+   D++KL  T+R AVR LDNVI++N + + +  
Sbjct: 276 LLPYE----ACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKYPLPEID 331

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MG+   L  L + Y S  A+++AD+ M FI+  A  AS  LA+ +G 
Sbjct: 332 RMTRGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNLAELKGV 391

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  ++ S++ Q                                   K I MRN+    IA
Sbjct: 392 FPFYEDSIYAQ-----------------------------------KGIKMRNATTTTIA 416

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T++ I GVS  I+P +   Y+++ M       NS LV   +   ++ EA +S   Y 
Sbjct: 417 PTGTLSLIAGVSSGIEPIFAISYIRNVMD------NSELV---EVNPVFKEAALSGNFYS 467

Query: 828 D---------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           D         G++ N+  +P ++++I  TA ++ P W ++  +  Q+  D A S  + L
Sbjct: 468 DELMKKIARVGTVKNMNEVPTNVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNL 526


>gi|219853155|ref|YP_002467587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
 gi|219547414|gb|ACL17864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
          Length = 730

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 165/587 (28%), Positives = 261/587 (44%), Gaps = 103/587 (17%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY  ++S  F+ ++PTL N+GT   QLS+CF   VPD + GIF A+++ A++ K  GG G
Sbjct: 44  FYEAMASLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSIGGIFDAMKQGAIIHKTGGGTG 103

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  G+ +  T G + G I F++V N     + QGG+R+GA    L   H D+  
Sbjct: 104 YNFSNIRPEGSPVQSTEGVASGPISFMRVFNAATEVIKQGGRRRGANMGILNVQHPDILA 163

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F++ +   G+      + N +  + D FM  V++       + D+V  +H   G+   + 
Sbjct: 164 FINAKTREGE----IANFNISVMVDDAFMHLVSEK------TFDKVWLVHPHTGEAITV- 212

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                     G+I           W  ++  +++ G P I F D  N  +P   +G++ +
Sbjct: 213 ----------GQI-----------WSGIVDGIWKNGEPGILFYDEINRHNPTPQLGMIDT 251

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           +N C E  L         C LGSINL A    +  D D L  T+RT VR+LD VID N +
Sbjct: 252 TNPCGEQPLLPYES----CVLGSINLAACVKGHVLDEDLLKETVRTGVRLLDIVIDKNVY 307

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            IE+  ++  T R IGLGLMG   AL ++ +PY SPEA    +  M+ +S  A+  S  L
Sbjct: 308 PIEEIAEATRTTRKIGLGLMGVHDALLMVRLPYDSPEARVWCEHVMKVVSETAVDESRVL 367

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G + + +GS+W +                                       +RN+
Sbjct: 368 AELLGPFPALQGSVWTE-------------------------------------FQVRNA 390

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI+ + G S  I+P +   Y + N  G  F VVN      L++  L  +  
Sbjct: 391 AMTTIAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKTFLVVNPVFKEALEE-TLALQGY 449

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK------WIDQAQ--- 871
             D + H        R+ + +  +H T    D +WL  +  R  K      W D  +   
Sbjct: 450 SGDDQTH--------RVDEVIAHVHETGTVQDLVWLPVAFRRLCKTALDIPWRDHVEMQA 501

Query: 872 --------SLNLYLDEPSGKKLDFIYRQ---AWLMGLKTTYYLRSRS 907
                   S++  ++ P     D        AW +GLK     R+ S
Sbjct: 502 AFQREVHASISKTINMPKSATRDDCAEALLLAWRLGLKGITIYRTNS 548


>gi|297570726|ref|YP_003696500.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931073|gb|ADH91881.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 716

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 192/649 (29%), Positives = 299/649 (46%), Gaps = 71/649 (10%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F  +LG    Y  Y L   +G R +E  +   + VA+ LA    E  K  V+  
Sbjct: 97  YAHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVVVALTLAAGNVELAKNLVD-- 154

Query: 344 NLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +L+   F  +TPT  N+G +   +L SCFL  V D++  I   +     L+K  GG+  
Sbjct: 155 EILTG-RFQPATPTFLNAGKKARGELVSCFLLRVEDNMESISRGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R LGA I     +S GV P +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 214 NLSNLRELGAPIKRIENQSSGVNPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIMRF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +NA   LFSP    D+  +YG  F EI+
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNADMYLFSP---YDVERVYGVPFTEIS 330

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E YE   D   I+   KI+A   ++ +  + FE+G+P+I ++D  N  +P    G + 
Sbjct: 331 VTEKYEEMVDDRRIRK-TKINARQFFQTLAEIQFESGYPYIVYEDTVNRANPID--GRIT 387

Query: 581 SSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI  ++  S   A            CNLGS+N+         D      T+ TA
Sbjct: 388 MSNLCSEILQVSEPSRYNADLSYEHVGKDISCNLGSLNIA-----KTMDSPDFGQTVETA 442

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  N   +   ++ N    AIGLG M     L    I Y S EA++  +   
Sbjct: 443 IRALTAVSDQTNIAAVPSIERGNDMSHAIGLGQMNLHGYLGREKIFYGSDEALDFTNIYF 502

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL-----LAEVRDELA-MNR 740
             +++HAI +S+ +A+ERG  +  F+ S +  G +    I        A VR+  A ++ 
Sbjct: 503 YTVAYHAIRSSMLIAKERGVRFEGFERSAYADGSYFAKYIEREWAPETARVRELFANVHI 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+  V   GM N N  A+ PT +I+ I   + SI P                
Sbjct: 563 PTVADWVALRDAVAAHGMYNQNLQAVPPTGSISYINHSTSSIHP---------------- 606

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V++++ R    E  I  + Y    + N      D K+ +  A+EI P  +I++ 
Sbjct: 607 -----IVSKIEIRK---EGKIGRVYYPAAYLTN------DNKEYYQDAYEIGPKAIIDTY 652

Query: 861 SRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +   + +DQ  SL L Y D  + + ++  Y  AW  G+K+ YY+R R A
Sbjct: 653 AAATQHVDQGLSLTLFYPDTVTTRDVNKSYIYAWRKGIKSLYYMRIRQA 701


>gi|326571162|gb|EGE21186.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC7]
          Length = 758

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 181/674 (26%), Positives = 299/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            +M V M L  +  + ++      FY+  S+F+    TP +  SG R P  Q SSC L  
Sbjct: 174 LYMLVGMCLFARYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 639 PPRGLVSIKASKDG 652


>gi|167043944|gb|ABZ08631.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG3J11]
          Length = 890

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 169/642 (26%), Positives = 299/642 (46%), Gaps = 58/642 (9%)

Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337
           A  LK    F++++ +G   L   +F  +    +E+ +   M+V+    L     +K   
Sbjct: 193 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 252

Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI     + A++ 
Sbjct: 253 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 312

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 313 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 372

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513
           WH D+E+F+  +   G       +++   W  D +   V    G +TL SP +       
Sbjct: 373 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 422

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571
                          +  GEI     I  +A         +++  P + F D  N  +  
Sbjct: 423 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 462

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626
            +   G + ++N C E +L         CNLGSI   NL+   A+ Q  FD+ +    I 
Sbjct: 463 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 518

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  +   + 
Sbjct: 519 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 578

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E   +      W
Sbjct: 579 AEALTYYSMEESVALAKNRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 630

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L ++++  G+RN     +APT T++ +   S  ++P++  ++ K    G F   N   
Sbjct: 631 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 690

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I     + + +  Q W
Sbjct: 691 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 750

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I  A +  + + ++ S + +   Y  A  MGLK     R  S
Sbjct: 751 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 792



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI KAF A        +I++ D +       + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYKAFSASNKPDKGLAIKLSDGV-------LVKLTEHGFS 71

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           A     +E IQD VE +L+  GH  I + Y+LYR ER  +R
Sbjct: 72  ANNPPSVEAIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 112


>gi|154508381|ref|ZP_02044023.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798015|gb|EDN80435.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
          Length = 718

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 198/662 (29%), Positives = 300/662 (45%), Gaps = 76/662 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F F  +LG    Y  Y L   +G R    + F  RVAM  L L   + E  A  F 
Sbjct: 97  YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARSFV 153

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + +  F  +TPT  N+G     +L SCFL  + D++  I   +     L+K  GG+  
Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +F
Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F EI+
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIS 330

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D G I   RKI+A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 331 VTEKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNKANPIK--GRIT 387

Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI       T N       V     CNLGS+N+     ++ F     + TI  A
Sbjct: 388 MSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLGSLNIAKTMDSSDF-----SKTIEMA 442

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ +  ++    + N    AIGLG M     L   H+ Y S EA++  +   
Sbjct: 443 IRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYF 502

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-LAEVRD---ELAMNRTS 742
             + F AI AS ++A+ERG  +  F+ S +  G F    I    A   D   EL    + 
Sbjct: 503 MTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSI 562

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797
           ++P    W+ L   V   GM N N  A+ PT +I+ I   + SI P    + + K    G
Sbjct: 563 KVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIG 622

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  ++ NE                       N+E   D        A+EI P  +I
Sbjct: 623 RVYYPAPYMSNE-----------------------NLEYYQD--------AYEIGPEKII 651

Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ +   + +DQ  SL L Y D  + + L+  Y  AW  G+KT YY+R R   ++E + +
Sbjct: 652 DTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWKKGIKTLYYMRLRQ-MALEGTEV 710

Query: 917 KG 918
           +G
Sbjct: 711 EG 712


>gi|167042931|gb|ABZ07646.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_ANIW137N13]
          Length = 885

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 169/642 (26%), Positives = 299/642 (46%), Gaps = 58/642 (9%)

Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337
           A  LK    F++++ +G   L   +F  +    +E+ +   M+V+    L     +K   
Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247

Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI     + A++ 
Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIMKTTSDAALIF 307

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513
           WH D+E+F+  +   G       +++   W  D +   V    G +TL SP +       
Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSEDGKYTLRSPKD------- 417

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571
                          +  GEI     I  +A         +++  P + F D  N  +  
Sbjct: 418 --------------NSSAGEINAHHLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626
            +   G + ++N C E +L         CNLGSI   NL+   A+ Q  FD+ +    I 
Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYEFDWQRYEEIII 513

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  +   + 
Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E   +      W
Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L ++++  G+RN     +APT T++ +   S  ++P++  ++ K    G F   N   
Sbjct: 626 DALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I     + + +  Q W
Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I  A +  + + ++ S + +   Y  A  MGLK     R  S
Sbjct: 746 ISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGS 787



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A        +I++ D +       + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDKELAIKLSDAV-------LIKLTEHGFS 66

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R
Sbjct: 67  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107


>gi|283786770|ref|YP_003366635.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282950224|emb|CBG89860.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 714

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 192/658 (29%), Positives = 309/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +   + VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVVMVALTLARGD---ETLARQLTDEIL 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 AGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNAALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+  +YGK F +IA  + 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDVTFRLAKENAQMALFSP---YDVERIYGKPFGDIAVSDL 330

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             Q    + +V +K I+A   ++++  + FE+G+P+I F+D  N  SP    G ++ SNL
Sbjct: 331 YDQL-VADARVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRASPV--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+S                CNLGS+N +AH      D      T+ TA+R L
Sbjct: 388 CSEILQVNSASTYDDNLDYAQTGHDISCNLGSLN-IAH----TMDSPDFGRTVETAIRGL 442

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D++   ++   +  N    AIGLG M     L    I Y SPE ++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTS 742
           +HA++ S++LA+ERG A++ FK S +  G +       D      +VR   A   +   +
Sbjct: 503 WHALNTSMKLARERGQAFAGFKQSRYASGEYFSQYLQGDWQPKTEKVRALFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWRQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE                       N++   D        A+EI P  +I++ +
Sbjct: 623 PAPFMTNE-----------------------NLDMYQD--------AYEIGPQKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINRAQIYAWRKGIKTLYYIRLRQ-LALEGTEIEG 708


>gi|212712929|ref|ZP_03321057.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
 gi|212684407|gb|EEB43935.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
          Length = 710

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 194/689 (28%), Positives = 310/689 (44%), Gaps = 78/689 (11%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIE 315
           +Y EE V A+       DF  +       Y   F F+ +LG    Y  Y L   +G R  
Sbjct: 66  KYYEEEVLAQY------DFPFIKQLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKR-- 117

Query: 316 MPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFL 373
             + +  RV M  L L +  K   ++ F + + +  F  +TPT  N G +   +L SCFL
Sbjct: 118 YLERYEDRVCMVALTLAQGSKSLASL-FVDEIITGRFQPATPTFLNCGKKQRGELISCFL 176

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I  ++     L+K  GG+    + +R  GA I     +S GV+P +K+  D
Sbjct: 177 LRIEDNMESIGRSVNSALQLSKRGGGVAFLMSNLREQGAPIKQIKNQSSGVVPVMKMLED 236

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 237 AFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLA 296

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N    LFSP ++  ++ +   E  +  E Y    +   IK F KI+A   ++ +  + 
Sbjct: 297 KNNEDMYLFSPYDIQKIYGVPMSEISVT-EKYHEMVNNKAIKKF-KINAREFFQTIAEIQ 354

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI  +N +S+           +   CN
Sbjct: 355 FESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNQASQYEDDLSYQEIGKDISCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+      N  D    A +I TA+R L  V D+ N  ++    K N    AIGLG 
Sbjct: 413 LGSMNIA-----NTMDSPDFALSIETAIRALTAVSDMSNIGSVPSIAKGNRQSHAIGLGQ 467

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L   HI Y S E ++  +     +++HA+  S +LA ER   +  F+ S +  G
Sbjct: 468 MNLHGFLAREHIHYGSEEGLDFTNIYFYTVAYHALKTSNQLAIERQQTFDGFESSSYASG 527

Query: 720 VF---PIDSIGL-LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    I++  L   +   EL       +P    W  LK+ V T GM N N  AI PT +
Sbjct: 528 EYFDKYINNTWLPKTQTVQELFRRSGIEIPTQANWQALKQSVMTNGMYNQNLQAIPPTGS 587

Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + + K    G       F+ NE                     
Sbjct: 588 ISYINNSTSSIHPVVAPIEIRKEGKIGRVYYPAPFMTNE--------------------- 626

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
             N++   D        A++I P  +I++ +   + +DQ  SL L+ D   + + ++   
Sbjct: 627 --NLQFYQD--------AYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGNATTRDINKAQ 676

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             AW  G+KT YY+R R  T++E + ++G
Sbjct: 677 IYAWRKGIKTLYYIRLRQ-TALEGTEVEG 704


>gi|237785989|ref|YP_002906694.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758901|gb|ACR18151.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 718

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 191/661 (28%), Positives = 310/661 (46%), Gaps = 74/661 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G+R +E  +     VA+GLA  +    +R V+  
Sbjct: 97  YSYKFRFKTFLGAYKYYTSYTLRTFDGNRYLERYEDRVCMVALGLADGDISLARRLVD-- 154

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 155 -EIIQGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 214 LLSNLREQGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F +I 
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFSDIG 330

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E+Y+   +   IK   KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++
Sbjct: 331 ISEHYDEMVEDPRIKK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRIN 387

Query: 581 SSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI  +NS SE  A            CNLGS+N+     ++ FD      TI TA
Sbjct: 388 MSNLCSEILQVNSPSEFNADLTYQHIGDDISCNLGSLNIAMVMDSDDFD-----GTIDTA 442

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S EA++  +   
Sbjct: 443 IRGLTAVSDQTSIDSVPSVRQGNEHSHAIGLGQMNLHGYLGREHIYYGSEEALDFTNAYF 502

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVR---DELAM 738
             +    + AS  LA+ERG  ++ F+ S +  G F     P D      +V+   +E ++
Sbjct: 503 AAVMVACLKASNRLAKERGVTFTGFEDSDYASGAFFDRYDPKDFAPKTEKVKRIFEESSI 562

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + T+   W +L++ ++  G+ N N  AI PT +I+ I   + SI P    + ++      
Sbjct: 563 SVTTPEEWAQLREDIQQYGLYNRNLQAIPPTGSISYINNSTSSIHPIASRIEIRK----- 617

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  I  + Y    + N     D+L      A+EI    +I+
Sbjct: 618 -------------------EGKIGRVYYPAPHMNN-----DNLDYFK-DAYEIGYEKVID 652

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R A ++E + ++
Sbjct: 653 TYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWKNGIKTLYYIRLRQA-ALEGTEVE 711

Query: 918 G 918
           G
Sbjct: 712 G 712


>gi|260599070|ref|YP_003211641.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260218247|emb|CBA33171.1| Ribonucleoside-diphosphate reductase 2 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 716

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 208/740 (28%), Positives = 320/740 (43%), Gaps = 91/740 (12%)

Query: 215 NYAKVTARFLLEKLRR--EVLTTVYKKPQKAT----HHEMQCLYPEYFCRYIEEGVKARL 268
           N      R   EK R   E     + +P+  T    H  +  L  E    Y +E V  R 
Sbjct: 26  NLYDADGRIQFEKDREAVEAFMAAHVQPRSVTFPDTHARLAYLVSE---GYYDENVLKRY 82

Query: 269 LHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRI--EMPQAFFMRV 324
                 D D      D  +   F F+ +LG    Y  Y L   +G R     P    M V
Sbjct: 83  ------DPDFAAGLFDEAHRDGFTFKTFLGAWKFYTSYTLKTFDGKRYLEHFPDRACM-V 135

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           A+ LA  +   E  A +    + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 136 ALTLACGD---ETLARQILKEILSGRFQPATPTFLNGGKQQRGELVSCFLLRIEDNMESI 192

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 193 GRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 252

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    NA   LFS
Sbjct: 253 RQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQMALFS 312

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +I+      Q    E    R ISA  L++++  + FE+G+P+I 
Sbjct: 313 P---YDVEHIYGKPFGDISVSEMYTQLVEDERIRKRYISARELFQRLAEIQFESGYPYIM 369

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           F+D  N  +P    G ++ SNLC+EI  +NS+S                CNLGS+N +AH
Sbjct: 370 FEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSLN-IAH 426

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D      T+ TAVR L  V D++   ++   +  N    AIGLG M     L  
Sbjct: 427 ----TMDSPDFGRTVETAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP------ 722
             I Y SPE ++  +     +++HA++ S+ LA+ERG  +  F+ S +  G +       
Sbjct: 483 EGIAYGSPEGLDFTNLYFYTVTWHALNTSMMLARERGERFEGFEASRYASGEYFDKYLTQ 542

Query: 723 --IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   +AE+     +   +   W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 543 TWTPRTARVAELFARAGITLPTPEMWRQLRDDVMRHGLYNRNLQAVPPTGSISYINHATS 602

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K    G       F+ NE                       N+ R  D
Sbjct: 603 SIHPIVSKIEIRKEGKIGRVYYPAPFMTNE-----------------------NLARYQD 639

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 640 --------AYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIK 691

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 692 TLYYIRLRQ-LALEGTEIEG 710


>gi|31791752|ref|NP_854245.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium bovis AF2122/97]
 gi|121636488|ref|YP_976711.1| putative ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988960|ref|YP_002643647.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617338|emb|CAD93447.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium bovis
           AF2122/97]
 gi|121492135|emb|CAL70600.1| Probable ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772073|dbj|BAH24879.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 710

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 168/636 (26%), Positives = 272/636 (42%), Gaps = 89/636 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 64  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N             LH L                     K+  ++ 
Sbjct: 301 SVGVTDAFLRAVERNG------------LHRLVNPRTG---------------KIVARMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 390 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 449

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S +     
Sbjct: 450 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRF----- 504

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                           ++   RN+   ++APT TI+ I G +  
Sbjct: 505 -------------------------------ARSGPRRNAQVTSVAPTGTISLIAGTTAG 533

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P ++
Sbjct: 534 IEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQR-GGVRGYPRLPAEV 592

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +    TA EI P W +   +  Q+ ++ A S  + L
Sbjct: 593 RAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNL 628



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V +R+G +  FD ++I  A+ +A         +R +   D        TV + +    
Sbjct: 7   AKVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADAL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 55  GRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99


>gi|293193539|ref|ZP_06609809.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
 gi|292819895|gb|EFF78897.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
          Length = 718

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 198/662 (29%), Positives = 298/662 (45%), Gaps = 76/662 (11%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F F  +LG    Y  Y L   +G R    + F  RVAM  L L   + E  A  F 
Sbjct: 97  YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARSFV 153

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + +  F  +TPT  N+G     +L SCFL  + D++  I   +     L+K  GG+  
Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +F
Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F EI+
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIS 330

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D G I   RKI+A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 331 VTEKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNKANPIK--GRIT 387

Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI       T N       V     CNLGS+N+         D    + TI  A
Sbjct: 388 MSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLGSLNIA-----KTMDSPDFSKTIEMA 442

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ +  ++    + N    AIGLG M     L   H+ Y S EA++  +   
Sbjct: 443 IRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYF 502

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-LAEVRD---ELAMNRTS 742
             + F AI AS ++A+ERG  +  F+ S +  G F    I    A   D   EL    + 
Sbjct: 503 MTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSI 562

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797
           ++P    W+ L   V   GM N N  A+ PT +I+ I   + SI P    + + K    G
Sbjct: 563 KVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIG 622

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  ++ NE                       N+E   D        A+EI P  +I
Sbjct: 623 RVYYPAPYMSNE-----------------------NLEYYQD--------AYEIGPEKII 651

Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ +   + +DQ  SL L Y D  + + L+  Y  AW  G+KT YY+R R   ++E + +
Sbjct: 652 DTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWKKGIKTLYYMRLRQ-MALEGTEV 710

Query: 917 KG 918
           +G
Sbjct: 711 EG 712


>gi|323966927|gb|EGB62355.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251393|gb|EGE63079.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
          Length = 714

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 194/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +K   A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDK-TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQINSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+    ++   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|147677926|ref|YP_001212141.1| ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274023|dbj|BAF59772.1| Ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 573

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 177/629 (28%), Positives = 284/629 (45%), Gaps = 96/629 (15%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVEFYNLLSSF 349
           +++L  RY     NG+ IE P+    RVA  +A  E        E  + A  F+ ++ + 
Sbjct: 8   MKVLAGRYLRRDENGNVIETPEEMCWRVARCVAAAEEKFGADCKEVAEWAERFFAVMDAL 67

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N G    QL++CF+  + D +  IF  L+  A++ K  GG G D++ +R 
Sbjct: 68  EFLPNSPTLINCGPAGGQLAACFVLPLADSIEKIFSTLKYTAIIHKSGGGTGFDFSRLRP 127

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + + GT G++ G + F++V N     + QGG R+GA    L   H D+ EF+  + + 
Sbjct: 128 KNSPVRGTGGRASGPVSFMRVFNAATEEIKQGGVRRGANIGILRADHPDIMEFIACKADE 187

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G  R    + N +      F   V + + W L             G              
Sbjct: 188 GTFR----NFNLSVAATGDFFTAVERGSRWPL----------SFNG-------------- 219

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                KV+R+  A  ++  +      +G P + F D  N  +P   +G + ++N C E  
Sbjct: 220 -----KVYREAEAREIFYSIARHAHASGEPGMLFIDSINRANPTPSLGQISATNPCGEQP 274

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL         D+++L   ++ AVR LD+VI++N   + +  K+
Sbjct: 275 LLPYES----CNLGSINLSRLTKGTGVDWERLGLLVQLAVRFLDDVIEVNRFPLPQIAKA 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG+   L  L IPY S  A+ +A+E M FI   A  AS  LA++RG + 
Sbjct: 331 TLRTRKIGLGVMGWADMLFKLGIPYDSGAALALAEEVMSFILQKAREASAGLARQRGPFP 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           S     W Q V+                        + EL        +RN+    IAPT
Sbjct: 391 S-----WRQSVY------------------------YPELP-------LRNATLTTIAPT 414

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVN----SFLVNELKQRDLWDEAMISDL 824
            +I+ I G S  I+P Y  +Y +  +  +   V+N     +L  E+K      E ++  L
Sbjct: 415 GSISAIAGTSSGIEPVYALVYSRLVLDDEKILVINKPFLQYLETEIKPES--GENILKKL 472

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           +    S+ ++  I  + + +  TA EI P W ++  +  QK+ D A S  + L  P+   
Sbjct: 473 ETGV-SLQSLPAIKPEARAVFKTALEIAPDWHLKMQAAFQKYTDNAVSKTINL--PANAT 529

Query: 885 LD---FIYRQAWLMGLK--TTYYLRSRSA 908
           +D    I+R+A+ +GLK  T Y   SRS 
Sbjct: 530 VDEIASIFRKAYQLGLKGVTVYRTGSRSG 558


>gi|307944766|ref|ZP_07660104.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
 gi|307771980|gb|EFO31203.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
          Length = 715

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 188/664 (28%), Positives = 311/664 (46%), Gaps = 74/664 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y R F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +   E  A+
Sbjct: 91  DAAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAQGD---EDLAM 147

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              + + S  F  +TPT  N+G +   +L SCFL  + D++  I   +     L+K  GG
Sbjct: 148 RMMDEIISGRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIGRGINSALQLSKRGGG 207

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 208 VALLLTNIREAGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDI 267

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  
Sbjct: 268 LQFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPHDVEKVYGTSLSQIS 327

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I  + Y    D   I+  +KISA   ++ +  + FE+G+P++ F+   N  SP    G +
Sbjct: 328 IT-DKYREMVDDPRIRK-KKISARGFFQTIAEIQFESGYPYVLFEGTANRASPVD--GHI 383

Query: 580 HSSNLCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRT 627
           + SNLC+EI  +N +S        E       CNLGS+N+         D   L +T+ T
Sbjct: 384 NMSNLCSEILQVNEASVFNDDLSYEHLGTDISCNLGSLNIA-----KAMDGGDLGATVET 438

Query: 628 AVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           AVR L  V +++   ++   ++ N    AIGLG M     L    I Y S E ++  +  
Sbjct: 439 AVRALTAVSNMSAIDSVPSVRRGNDESHAIGLGQMNLHGYLARERIHYGSEEGIDFTNIY 498

Query: 687 MEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFP--------IDSIGLLAEVRDE 735
              +++H + AS +LA+E+G  SSFKG   S +  G F         + +   +A + + 
Sbjct: 499 FYAVAYHCLRASNKLAREQG--SSFKGFEKSRYADGSFFDKYIENDWMPATERIANLFET 556

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++  +   W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 557 AGISLPTCDDWQALKEAVQRDGLYNRNLQAVPPTGSISYINNSTSSIHP----------- 605

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                     +V++++ R    E  I  + Y    + N     D+L   +  A+EI P  
Sbjct: 606 ----------IVSKIEIRK---EGKIGRVYYPAAYMDN-----DNLD-YYQDAYEIGPEK 646

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E +
Sbjct: 647 IIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQ-MALEGT 705

Query: 915 TLKG 918
            ++G
Sbjct: 706 EVQG 709


>gi|240169273|ref|ZP_04747932.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium kansasii ATCC 12478]
          Length = 696

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/620 (26%), Positives = 265/620 (42%), Gaps = 84/620 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHF 351
           + +L +RY L    G   E       R A  +A  E E       + A  F  LL +  F
Sbjct: 118 VMVLRERYLLRDARGRPTESTGEMMDRTARCVAAAEDEYRTGSSAQWAERFATLLRNLEF 177

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT    L+ CF+  V D L  IF  L + A + +  GG G  ++ VR  G
Sbjct: 178 LPNSPTLMNAGTDLGLLAGCFVLPVEDSLRSIFATLGQAAEVQRAGGGTGYTFSRVRPAG 237

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  
Sbjct: 238 DRVASTGGTASGPMSFLRLYDTAADVVSMGGRRRGACMAVLDASHPDICDFISAKAESTS 297

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
               TH  N +  + D F++ V +     L +P                           
Sbjct: 298 --HLTH-FNLSVGVGDAFLRAVERGGAHRLVNPRTG------------------------ 330

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              K   ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L 
Sbjct: 331 ---KTVARMPAAELFDAICQAAHACGDPGLVFLDTINRANPVPARGRIEATNPCGEVPLL 387

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL     N   D+D+L +    AVR LD+VID++ +   +  ++  
Sbjct: 388 PYES----CNLGSINLARMITNGHLDWDRLGAVTEVAVRFLDDVIDVSRYPFPELAEATR 443

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MG    L  L IPY S E V +A + M  I  HA  AS  LA++RG++ +F
Sbjct: 444 ASRKIGLGIMGLAELLASLGIPYDSVEGVRLAGQVMRRIQRHAHLASRRLAEDRGSFPAF 503

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S                                    + V+    RN+   ++APT T
Sbjct: 504 ADS------------------------------------RLVRFGPRRNAQVTSVAPTGT 527

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I G +  I+P +   + ++ +      VN       + +  + + +++++    G +
Sbjct: 528 ISLIAGTTAGIEPMFAIAFTRAIVGRQLLEVNPCFDRLARDQGFYRDELVAEIA-QRGGV 586

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FI 888
               R+P +L+    TA EI P W +   +  Q+ +D A S  + L  P+   +D    +
Sbjct: 587 RGYPRLPAELRAAFPTAAEIAPQWHLRMQAAVQRHVDAAVSKTVNL--PAAATVDDVRAV 644

Query: 889 YRQAWLMGLK--TTYYLRSR 906
           Y  AW   +K  T Y   SR
Sbjct: 645 YLSAWRAKVKGITVYRYGSR 664



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           TV R +       I  +E + D VE  L ++G   + R Y++YR+ R+++RA ++
Sbjct: 49  TVARAVADTLGPRIASVERVGDFVEARLGEAGLDDVARAYIIYRQRRAELRAGKA 103


>gi|256832971|ref|YP_003161698.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686502|gb|ACV09395.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
          Length = 705

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 193/664 (29%), Positives = 296/664 (44%), Gaps = 81/664 (12%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340
           D  Y   F FE +LG    Y  Y L   +G R    + F  RV M  L L + + E  A+
Sbjct: 81  DAAYAMKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-ETLAL 137

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + + S  F  +TPT  NSG +   +  SCFL  + D++  I   +     L+K  GG
Sbjct: 138 QLVDEIISGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIARGVNSALQLSKRGGG 197

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 198 VALLLSNLREFGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 257

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F 
Sbjct: 258 MRFLDTKRENADEKVRIKTLSIGVVIPDITFELAKKNEDMYLFSP---YDVERIYGKPFA 314

Query: 520 IA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                E Y    D G I+   KI A   ++ +  + FE+G+P++ F+D  N  +P +  G
Sbjct: 315 DVNVSELYHEMVDDGRIRK-TKIKARDFFQTIAELQFESGYPYVMFEDTVNKSNPIK--G 371

Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624
            +  SNLC+EI L  S+  T               CNLGS+N+         D   L +T
Sbjct: 372 KITHSNLCSEI-LQVSTPSTYNDDLSYKEIGRDISCNLGSLNIA-----KAMDGGNLGAT 425

Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + TA+R L  V D  +  ++   +  N    AIGLG M     L   HI Y S E ++  
Sbjct: 426 VDTAIRALTAVSDQTSIDSVPSIRHGNELGHAIGLGQMNLHGFLAREHIHYGSEEGIDFT 485

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAE-----VRD--- 734
                 +++HAI AS +LA ERG A+  F+ S +  G +       + E     V+D   
Sbjct: 486 SIYFYAVAYHAIKASNQLAIERGRAFGGFEDSTYASGEYFDKYTNRVWEPTTQRVKDLFE 545

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793
           +  +   ++  W ELKK V   G+ N N  A+ PT +I+ I   + SI P    + + K 
Sbjct: 546 KFGIAIPTQDDWRELKKSVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKE 605

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       ++ NE                       N+E   D        A+EI  
Sbjct: 606 GKIGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGY 634

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR----SA 908
             ++++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    + 
Sbjct: 635 EKIVDTYAAATEHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQLALTG 694

Query: 909 TSVE 912
           T VE
Sbjct: 695 TEVE 698


>gi|326570478|gb|EGE20518.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC8]
          Length = 758

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 182/676 (26%), Positives = 300/676 (44%), Gaps = 53/676 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQ- 172

Query: 320 FFMRVAMGLAL----KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
            F+ V MG+ L     + ++      FY+  S+F+    TP +  SG R P  Q SSC L
Sbjct: 173 -FLYVLMGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVL 229

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D+L  I               G+G +   +R LG+ I G   +  G IPF K+   
Sbjct: 230 VECGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQA 289

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+
Sbjct: 290 AVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARL 349

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML
Sbjct: 350 IKGTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLML 405

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C 
Sbjct: 406 QERASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCT 465

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++
Sbjct: 466 LSAINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVI 520

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ 
Sbjct: 521 NYAYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGIL 580

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  
Sbjct: 581 PIDT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNG 636

Query: 782 IDPSYQNLYVKSNMSG 797
           I+P    + +K++  G
Sbjct: 637 IEPPRGLVSIKASKDG 652


>gi|326804584|ref|YP_004327455.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
 gi|301795234|emb|CBW37952.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
          Length = 758

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 207/808 (25%), Positives = 351/808 (43%), Gaps = 91/808 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  DG+ + F+ ++L  ++E AC GL+ VS   V + +     D +    ++  +I 
Sbjct: 2   INIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIIIQ 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ TLI  E PNY  V AR     LR+ V+   YK P     H +     + F + I++G
Sbjct: 62  AAATLISVEKPNYQYVAARLKSYDLRK-VVYGRYKPP-----HLL-----DIFAKNIKQG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS----RIEMPQA 319
           V  R   E     +   L   + ++RD  F +  +  L  +Y L    +      E PQ 
Sbjct: 111 VYDREFLELYTKEEFEELNTVINHKRDKNFTWAAMGQLTQKYLLRDRSADSKVYYETPQV 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
            +M +AM L     +KE R     +FY   S+  F   TP +  SG R P  Q SSC L 
Sbjct: 171 MYMAIAMAL-FSAWDKETRLTMVKKFYEYASTGKFSLPTPIM--SGVRTPTRQFSSCVLI 227

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I    +          G+G D   +RG+G+ I        G++PF+K     
Sbjct: 228 KTGDTLDSINATAKSIVDYVSKRAGIGFDVGAIRGIGSPIRKGEMVHTGLVPFIKYLTGA 287

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R G+   Y+  WH   ++ + L+ N G +  R   ++    I  +  +R+ 
Sbjct: 288 LKSCSQGGIRGGSATCYIPIWHYQFDDVVVLKNNRGLEENRERRIDYGIQINRVMFERLV 347

Query: 495 QNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
                 LF P +  D+++ +  +   F   Y+N  + AD G ++  +K++A  +++ +L 
Sbjct: 348 NKQPLYLFDPKDNRDMYEAFFADVDKFRTLYDNMVKAADAGLVRA-KKMNAEEVFQMLLD 406

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              +TG  +I F D  N  SP  ++  ++SSNLC EI L        +      A+C L 
Sbjct: 407 QRSDTGRIYIAFVDHMNQYSP-FNLDTIYSSNLCLEIALPTREFQQYDDEEGRIALCTLA 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S NL A       D  ++       V  LD +++   +   +A+ +   +R +G+G++  
Sbjct: 466 SFNLTAF-----EDPTEMEDVAYVLVSALDMLLEYQDYPARQARLAVEEYRPLGIGVVNV 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
                     Y SP  +E+ D+ M  + F+ + AS  LA + GA    K ++   G    
Sbjct: 521 AHFFAKNFTGYGSPVGLELLDKWMAHLHFYLVKASNRLAMKFGACK--KETIHRSGKITA 578

Query: 724 D----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           D     + +L   +    M     L WD LK  ++  G+RN+  +AIAPT + + +   +
Sbjct: 579 DLQPLPLDILPNGKKPEGM--AYGLDWDGLKDSLRCHGIRNATLLAIAPTESSSQVLNAT 636

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K +  G +  +           D+     + DLK++   I       D
Sbjct: 637 NGIEPPKGLISIKGSKDGVYKQIVP---------DVETLGPLYDLKWNLSCI-------D 680

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQA---- 892
            LK                +A+  Q+W+DQ+ S+N + D    P GK    +  Q     
Sbjct: 681 YLK----------------TAAVAQRWVDQSISVNTHYDPEKFPDGKIPRSLMMQDILSF 724

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           ++ G KT YY  + +  S E   LK V+
Sbjct: 725 YMWGGKTLYY--NTNKDSKEDEELKQVE 750


>gi|269121364|ref|YP_003309541.1| ribonucleoside-diphosphate reductase, subunit alpha [Sebaldella
           termitidis ATCC 33386]
 gi|268615242|gb|ACZ09610.1| ribonucleoside-diphosphate reductase, alpha subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 696

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 164/596 (27%), Positives = 282/596 (47%), Gaps = 64/596 (10%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +++E+  +L +  +  +TPT  NSG  R  +L SCFL  + D+L GI  A+     L+  
Sbjct: 132 QSLEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSI 191

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +RG G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H
Sbjct: 192 GGGVALNLSKLRGRGESIKGVEGRASGVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFH 251

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFLD +K   D++ R   ++    IPD FM+   ++  + +F    V   +  Y  
Sbjct: 252 SDIEEFLDCKKINVDEKVRIKSLSIGVIIPDKFMELAEKDEPYYVFHAHTVFQEYGKYLD 311

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           + ++  E YE   D   +K  +K++A  L  K+     E+G+P++ FKD  N     + +
Sbjct: 312 DMDMN-EMYEELVDNPNVKK-KKLNARHLLVKIAQTQKESGYPYLFFKDNANNEHALKDI 369

Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624
           G V  SNLCTEI        + +  EE  +     CNLGS+N++    N      ++   
Sbjct: 370 GEVKFSNLCTEIMQLSEVSDIGTYYEEDTIRRGISCNLGSLNIVTVMENK-----RIKEA 424

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++TA+  L  V D+ N   +   KK+N    ++GLG M          I Y S EA++  
Sbjct: 425 VKTAMESLTMVSDLTNIDMVPSIKKANEELHSVGLGAMNLHGFFAKNFIMYESREALDFC 484

Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF--------PIDSIGLLAEVRD 734
           +     +++++I  S+E+A++R   +  F+ S + +G +         +     + E+ D
Sbjct: 485 NVFFMIVNYYSIEKSMEIARDRNKRFKDFEKSEYAKGTYFDKYTEHEYMPKTEKVKELFD 544

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++  ++  W+ LK +V   GM ++  MAIAP  + + I   + S+ P          
Sbjct: 545 --GIHIPTKEDWEILKGQVMKNGMYHAYRMAIAPNQSTSYILSSTASVMP---------- 592

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                      +V+ ++ R+  D      + Y          + +D    + +A+++D  
Sbjct: 593 -----------IVDTIEVREYGDSTTFYPMPY----------LTNDNYFFYKSAYDMDQK 631

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSAT 909
            LI+  S  Q+ +DQ  S  LY +     + L   Y  A  MGLK+ YY R+R AT
Sbjct: 632 SLIKLISVIQRHVDQGISTILYTNSSDNTRDLAKYYVYAHKMGLKSLYYTRTRKAT 687


>gi|290473789|ref|YP_003466663.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           bovienii SS-2004]
 gi|289173096|emb|CBJ79869.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 763

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 188/676 (27%), Positives = 298/676 (44%), Gaps = 53/676 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  +D+   +I 
Sbjct: 5   LLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTADIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  + AR  +  LR++     Y + +    H+       +  R +  G
Sbjct: 65  AAADLISGDAPDYQYLAARLAIFHLRKKA----YGQFEPPALHD-------HVVRMVNLG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYSKEEFEQMDSFINHLRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      KE R      FY+ +S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FSTYPKETRLSYIRRFYDAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRDGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQAD-RGEIKVFRKISAVALWRKMLTM 552
              TLFSP +V  L+D +     EFE  Y  YE     R E     +I AV L+  M+  
Sbjct: 351 EDITLFSPSDVPGLYDAFFADQDEFERLYTQYESDVTIRKE-----RIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPMNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A   NN     +L      AVR LD+++D   + I  AK+ +   R +G+G++ F
Sbjct: 466 AFNLGA--INNL---TELEELAELAVRALDSLLDYQDYPIIAAKQGSMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEKGACPWFGETTYAQGILPI 580

Query: 724 DSIG--LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           D+    L    R+ L M+      W+ L+  ++  G+RNS   A+ P+ T + I   +  
Sbjct: 581 DTYKKTLDTLTREPLHMD------WETLRNDIRQHGLRNSTLSALMPSETSSQISNATNG 634

Query: 782 IDPSYQNLYVKSNMSG 797
           I+P    + +K++  G
Sbjct: 635 IEPPRGYISIKASKDG 650


>gi|324014405|gb|EGB83624.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
          Length = 626

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 190/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A +  + + 
Sbjct: 9   FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLAAQLTDEML 65

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 66  SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 125

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 126 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 185

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A  E 
Sbjct: 186 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISER 242

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 243 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 299

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 300 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 354

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ + H++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 355 TAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 414

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 415 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 474

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 475 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 534

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 535 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 563

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 564 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 620


>gi|262039139|ref|ZP_06012465.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746836|gb|EEY34349.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
          Length = 712

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 167/598 (27%), Positives = 279/598 (46%), Gaps = 68/598 (11%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A+E+  +L +  +  +TPT  NSG  R  +L SCFL  + D+L GI  A      L+  
Sbjct: 148 KAMEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSGIGYAFDSAMKLSSI 207

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + VR  G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H
Sbjct: 208 GGGVSINLSKVRARGESIKGVEGRASGVLPIMKIMEDIFSYANQLGQRAGAGAVYLNVFH 267

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EFLD +K   D++ R   ++    +PD FM+   ++     F+P  V   +  Y  
Sbjct: 268 SDINEFLDCKKINVDEKIRIKSLSIGVIVPDKFMELAKEDEICYTFNPHTVFLEYGQYLD 327

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E ++  E YE+  D   +K  +KI+A  L  K+     E+G+P++ FKD  N     + +
Sbjct: 328 EMDMN-EMYEKLVDNPNVKK-KKINARELLIKISQTQKESGYPYLFFKDNANKEHALKEI 385

Query: 577 GVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624
           G V  SNLCTEI        +N   EE  +     CNLGS+N++    NN     ++   
Sbjct: 386 GNVKFSNLCTEIMQLSEVSDINPYFEEDTIRRGISCNLGSLNIVTVMENN-----RIREA 440

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            R A+  L  V D+ N   +   KK+N    ++GLG M     L    I Y S EA++  
Sbjct: 441 TRAAIDSLTTVSDLTNIDIVPSIKKANEELHSVGLGAMNLHGFLAKNFIMYESKEALDFC 500

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----------VFPIDSIGLLAEV 732
           +     ++++++  S+E+A+ERG  +  F  S +  G           FP      + E+
Sbjct: 501 NVFFMMMNYYSLERSMEIARERGEVFKDFDKSEYANGNYFNKYIEKSYFP--QTEKIKEL 558

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            D + +   ++  W +LK+ V   G+ N+  MAIAP  + + I   + S+ P        
Sbjct: 559 FDGIYV--PTKEDWAKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNSTASVMP-------- 608

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +V+ ++ R+  D      + Y          + +D    + +A+++D
Sbjct: 609 -------------IVDTIEVREYGDSTTFYPMPY----------LTNDNYFFYKSAYDMD 645

Query: 853 PMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
              +++  S  Q+ +DQ  S  L+     + + L  +Y     +GLK+ YY R+R AT
Sbjct: 646 QKNILKLVSVIQRHVDQGISTILFNKSTDTTRDLAKLYIYGHRLGLKSLYYTRTRKAT 703


>gi|326560442|gb|EGE10824.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 7169]
 gi|326565823|gb|EGE15985.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC1]
          Length = 758

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            ++ V M L     + ++      FY+  S+F+    TP +  SG R P  Q SSC L  
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 639 PPRGLVSIKASKDG 652


>gi|300990602|ref|ZP_07179252.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300305719|gb|EFJ60239.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
          Length = 701

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ + H++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|293394771|ref|ZP_06639062.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
 gi|291422722|gb|EFE95960.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
          Length = 693

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 185/679 (27%), Positives = 307/679 (45%), Gaps = 86/679 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F FE +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 60  DFPFIKQLFKQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           + +  +  VE    + S  F  +TPT  NSG R   +L SCFL  + D++  I  A+   
Sbjct: 120 DRQLAQDLVE---EMISGRFQPATPTFLNSGKRQRGELVSCFLLRIEDNMESIGRAVNSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   +  ++ E Y    D   I+  R I+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGMPFSDISVS-EKYREMVDDKRIRKSR-INARDFFQVLAEIQFESGYPYMMFEDTVNRE 354

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G ++ SNLC+EI  +N +S+           +   CNLGS+N+         D 
Sbjct: 355 NPI--AGRINMSNLCSEILQVNRASKYHDDLGYAQVGKDISCNLGSLNIA-----KTMDA 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 + TA+R L  V ++ +  ++    + N   RAIGLG M     L    I Y SP
Sbjct: 408 ADFGKAVNTAIRALTAVAEMSDIRSVPSIAEGNRASRAIGLGQMNLHGYLARERIYYGSP 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG--------- 727
           E ++  +     +++HAI AS +LA ERG A+  F+ S +  G +    +          
Sbjct: 468 EGIDFTNIYFYTVAYHAIRASNQLAIERGNAFDGFEHSAYASGDYFAKYVDRQWQPQTER 527

Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              L AE   E+     ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 528 VRQLFAEAGVEIP----TQEQWLALRQSVMLHGLYNQNLQAVPPTGSISYINNSTSSIHP 583

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDD 840
                                +V+ ++ R              +G IG +      + +D
Sbjct: 584 ---------------------IVSRIEIR-------------KEGKIGRVYYPAPYMTND 609

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
               +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 610 NLDYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKT 669

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + ++G
Sbjct: 670 IYYIRLRQ-MALEGTEVQG 687


>gi|160931914|ref|ZP_02079307.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
 gi|156869251|gb|EDO62623.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
          Length = 812

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 176/625 (28%), Positives = 290/625 (46%), Gaps = 87/625 (13%)

Query: 298 LQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFH 350
           L +L  RY + +  G  IE  +  F RVA  +A  +       + E  A  FY ++++  
Sbjct: 67  LTVLERRYLIKNGEGVVIETVEELFRRVAGAIAASDRRYDENADCEALADSFYRMMTNLE 126

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  V D + GIF  +++ A++ K  GG G  ++ +R  
Sbjct: 127 FLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFETIKQAALIHKSGGGTGFSFSRLRPC 186

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ EF+  + N  
Sbjct: 187 GSAVNSTGGVASGPISFMKVFNMATEAVKQGGTRRGANMGILRVDHPDIMEFIHCKTNN- 245

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
              +   + N +  + + FM  V                     GK++E+         D
Sbjct: 246 ---KEITNFNISVGLTEKFMNAVEA-------------------GKDYELV--------D 275

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V   ++A  ++  ++   +  G P I F D  N  +     G + S+N C E  L
Sbjct: 276 PHGGRVTGTLNAREVFECIVDAAWHNGEPGIIFLDRLNRDNVVPKAGEIESTNPCGEQPL 335

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    CNLGSINL            FD+DKL +T + AV  LDNVID N + +++ 
Sbjct: 336 LPYES----CNLGSINLTKMLREENGVYSFDWDKLKATAKKAVHFLDNVIDANKYPLKEI 391

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
                  R +GLG+MG+  AL  L IPY S +AV +A+  M  ++      S ELA+ RG
Sbjct: 392 DFMTKQTRKVGLGVMGWADALLRLKIPYNSEQAVRLAETVMRAVTEAGREESRELAKARG 451

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  F+ S  DQ                         LP             RN+    I
Sbjct: 452 TFPLFQESTLDQ------------------------ELP------------QRNATVTTI 475

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT T++ +   S  ++P +  +Y+++ M G +   VN  L   L++R L+ + ++  + 
Sbjct: 476 APTGTLSLLASCSSGVEPIFGYVYIRNIMDGTEMIEVNPILREVLEERGLYSDELMKKIA 535

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKK 884
              GS+  IE IP++++++  +A E+ P + I   +  Q+  D A S  + + +  + ++
Sbjct: 536 -KQGSLEGIEEIPEEIRRVFVSAHEVSPEFHIRMQAAFQRHTDNAVSKTVNFCNSATREE 594

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRS 907
           +  +Y+ A+ +G K  T Y   SRS
Sbjct: 595 VAEVYKLAFRLGCKGVTIYRDGSRS 619


>gi|301019060|ref|ZP_07183271.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300399413|gb|EFJ82951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
          Length = 701

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 191/679 (28%), Positives = 308/679 (45%), Gaps = 74/679 (10%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIF 384
           M   +     E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 119 MVALMLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 178

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 179 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 238

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP
Sbjct: 239 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP 298

Query: 505 DEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
               D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I +
Sbjct: 299 ---YDVERVYGKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMY 355

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH 
Sbjct: 356 EDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH- 411

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L   
Sbjct: 412 ---TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 468

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--- 726
            I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +   
Sbjct: 469 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGN 528

Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 529 WQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 588

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + + K   +G       F+ NE       + A+  D                 
Sbjct: 589 IHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD----------------- 624

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 625 -------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 677

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + ++G
Sbjct: 678 LYYIRLRQ-MALEGTEIEG 695


>gi|319408169|emb|CBI81822.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           schoenbuchensis R1]
          Length = 711

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 195/676 (28%), Positives = 308/676 (45%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317
           IEEG   + L E + DF  V       Y   F F  +LG    Y  Y L   +G R    
Sbjct: 64  IEEGYYEKALFE-LYDFSFVKKLFKHAYAFKFRFPTFLGAFKYYTSYTLKTFDGKR--YL 120

Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
           + +  RV + +AL   +  K   E   + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 121 ERYEDRVCL-VALYLAQGNKTLAECLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 179

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D  
Sbjct: 180 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDAF 239

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 240 SYANQLGARQGAGAVYLHAHHLDIMTFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 299

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFSP    D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 300 NEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 355

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-ETAV----------CN 601
           FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +SE ET +          CN
Sbjct: 356 FESGYPYLLFEDTANRTNPI--AGRINMSNLCSEILQVNEASELETDLTYRTIGNDISCN 413

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     ++ F +     T+ TAVR L  V D+ N   +    K N    AIGLG 
Sbjct: 414 LGSMNIAKAMESSDFGW-----TVETAVRALTAVSDMSNIACVPSIAKGNSESHAIGLGQ 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++H + AS  +A+ER   +  F+ S +  G
Sbjct: 469 MNLHGFLARERIYYGSPEAIDFTNIYFYTVAYHVLRASNLIARERQKVFVGFEKSAYADG 528

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I         L+ E+ +   +   ++  W ELKK V   G+ N N  AI PT +
Sbjct: 529 SFFTKYIETEWKPQFPLVQELFERNNIVIPNQEDWKELKKLVIEHGLYNRNLQAIPPTGS 588

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 589 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 624

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 625 DNTNL------DFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDVNCAQI 678

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 679 YAWKKGIKSVYYIRLR 694


>gi|260904341|ref|ZP_05912663.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           linens BL2]
          Length = 693

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 182/663 (27%), Positives = 293/663 (44%), Gaps = 79/663 (11%)

Query: 276 FDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333
           FD +   +   Y   F F+ +LG    Y  Y L   +G R    + F  RV M       
Sbjct: 61  FDFIEELSKHAYSAKFRFQTFLGAFKFYTSYTLKTFDGKR--YLERFEDRVVMVALFLAR 118

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAM 392
             E  A +  + +    F  +TPT  N+G +   +L SCFL  + D++  I  ++     
Sbjct: 119 GDETLAKQLVDEIIHGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQ 178

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 179 LSKRGGGVAFALTNIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 238

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+ +FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  
Sbjct: 239 HAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSP---YDVER 295

Query: 513 LYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YG  F      E YE   D   IK   KI+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 296 VYGMPFSDVNVTEKYEEMVDNAAIKK-NKINAREFFQTLAEIQFESGYPYVMFEDTVNKA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI   S               +   CNLGS+N+     +  F  
Sbjct: 355 NPID--GKIIMSNLCSEILQVSEPSKYDSDLGYDVVGKDISCNLGSLNIALTMDSTDF-- 410

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                TI TA+R L  V +  +  ++    + N    AIGLG M     L   HI Y S 
Sbjct: 411 ---GQTIETAIRGLTAVAETSDIQSVPSIARGNDMSHAIGLGQMNLHGYLAREHIYYGSD 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSI-----GL 728
           E ++  +     +++H + AS+E+A+ER  A++ F+ S +  G +     D +       
Sbjct: 468 EGLDFTNMYFYTVAYHCVRASMEIAKERKTAFAGFERSKYASGEYFDKYTDEVWEPRTRR 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +AE+  E  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VAEMFTEAGVHIPTQDDWRELKAAVAEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASK 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844
           + ++                                   +G IG +      + +D  K 
Sbjct: 588 VEIRK----------------------------------EGKIGRVYYPAPFMDNDNLKY 613

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI    +I++ +   K +DQ  SL L ++D  + + ++     AW  G+KT YY+
Sbjct: 614 YQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFMDTATTRDINKAQIYAWRKGIKTIYYI 673

Query: 904 RSR 906
           R R
Sbjct: 674 RLR 676


>gi|237729634|ref|ZP_04560115.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226908240|gb|EEH94158.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 714

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 196/666 (29%), Positives = 311/666 (46%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340
           D  +   F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A+
Sbjct: 90  DHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGD-ETLAM 146

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG
Sbjct: 147 QLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGG 206

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 207 VAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDI 266

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  K   +NA   LFSP    D+  +YGK F 
Sbjct: 267 LRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDVERIYGKPFG 323

Query: 519 EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +IA  E Y E  AD    K +  I+A   ++++  + FE+G+P+I F+D  N  +P    
Sbjct: 324 DIAVSERYDELLADERVRKKY--INARDFFQRLAEIQFESGYPYIMFEDTVNSANPI--A 379

Query: 577 GVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G ++ SNLC+EI  +NS+S                CNLGS+N +AH      D      T
Sbjct: 380 GRINMSNLCSEILQVNSASTYDENLNYAQTGHDISCNLGSLN-IAH----TMDSPDFGRT 434

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + TAVR L  V D+ +  ++   +  N    AIGLG M     L    I Y SPE ++  
Sbjct: 435 VETAVRGLTAVSDMSHIRSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFT 494

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA 737
           +     I++HA++ S+++A+ERG  ++ FK S +  G +       D      +VR   A
Sbjct: 495 NIYFYTITWHALNTSMKIARERGQTFAGFKQSRYASGEYFNQYLQGDWQPKTDKVRALFA 554

Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793
              +   +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + + K 
Sbjct: 555 ASGITLPTREMWSQLREDVMHYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKE 614

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             +G       F+ NE       + A+  D                        A+EI P
Sbjct: 615 GKTGRVYYPAPFMTNE-------NLALYQD------------------------AYEIGP 643

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E
Sbjct: 644 QKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALE 702

Query: 913 KSTLKG 918
            + ++G
Sbjct: 703 GTEIEG 708


>gi|191171419|ref|ZP_03032968.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|190908353|gb|EDV67943.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
          Length = 714

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++  H++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|218690803|ref|YP_002399015.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218428367|emb|CAR09296.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ED1a]
          Length = 714

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 194/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++  H++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|15803195|ref|NP_289227.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832792|ref|NP_311565.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|168750918|ref|ZP_02775940.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755420|ref|ZP_02780427.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762470|ref|ZP_02787477.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768766|ref|ZP_02793773.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774793|ref|ZP_02799800.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778657|ref|ZP_02803664.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168800560|ref|ZP_02825567.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938429|ref|ZP_03083811.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808050|ref|ZP_03250387.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813711|ref|ZP_03255040.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819046|ref|ZP_03259366.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398305|ref|YP_002272141.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327374|ref|ZP_03443457.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794622|ref|YP_003079459.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|291284008|ref|YP_003500826.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|12517114|gb|AAG57785.1|AE005496_8 ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363009|dbj|BAB36961.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|187769664|gb|EDU33508.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014971|gb|EDU53093.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003146|gb|EDU72132.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357239|gb|EDU75658.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189361996|gb|EDU80415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367236|gb|EDU85652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189377190|gb|EDU95606.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208727851|gb|EDZ77452.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734988|gb|EDZ83675.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739169|gb|EDZ86851.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159705|gb|ACI37138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762248|gb|ACI79436.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762250|gb|ACI79437.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762252|gb|ACI79438.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762254|gb|ACI79439.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762256|gb|ACI79440.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|217319741|gb|EEC28166.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594022|gb|ACT73383.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|290763881|gb|ADD57842.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|320189006|gb|EFW63665.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320646029|gb|EFX15006.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651329|gb|EFX19760.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320656720|gb|EFX24608.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662263|gb|EFX29660.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667314|gb|EFX34272.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338610|gb|EGD62436.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|326342862|gb|EGD66630.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 714

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 313/680 (46%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 G + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|326561646|gb|EGE11983.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 103P14B1]
 gi|326573452|gb|EGE23420.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 101P30B1]
          Length = 758

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            ++ V M L     + ++      FY+  S+F+    TP +  SG R P  Q SSC L  
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFANQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 639 PPRGLVSIKASKDG 652


>gi|326575650|gb|EGE25573.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis CO72]
          Length = 758

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAKDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            ++ V M L     + ++      FY+  S+F+    TP +  SG R P  Q SSC L  
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 639 PPRGLVSIKASKDG 652


>gi|91793307|ref|YP_562958.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           denitrificans OS217]
 gi|91715309|gb|ABE55235.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella denitrificans OS217]
          Length = 762

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 206/788 (26%), Positives = 342/788 (43%), Gaps = 97/788 (12%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-P 214
           S +  ++  ++  +  GL++VS   V   ++   +DG+    +   +I ++  LI  + P
Sbjct: 16  SIDLDKIHRVITWSTKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIKAAADLISPDSP 75

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  V AR  +  LR++     ++ P    H            R +E G   + +     
Sbjct: 76  DYQFVAARLAVFHLRKKAYGQ-FEPPSLVDH----------VTRLVELGKYDKNILTDYT 124

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALK- 331
             +L  +   + + RD  F Y  ++ L  +Y +   +     E  Q  ++ VA  L  + 
Sbjct: 125 REELEVMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLYILVAACLFARY 184

Query: 332 -ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQ 388
               + K   +FY+  S+F     TP +  +G R P  Q SSC L    D L  I     
Sbjct: 185 PAETRLKYIKDFYDATSNFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATAS 242

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
                     G+G +   +R LG+ I G      G +PF K       + +QGG R GA 
Sbjct: 243 SIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGGVRGGAA 302

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +    +LFSP +V 
Sbjct: 303 TLFYPIWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGQDISLFSPSDVP 362

Query: 509 DLHDLYGK---EFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFK 564
            ++D +     EFE  Y  YE+     + ++ RK + AV L+  M+     TG  +I   
Sbjct: 363 GMYDAFFADQVEFERLYLQYEQ-----DTRIRRKTLKAVELFSLMMQERASTGRIYIQNV 417

Query: 565 DPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQ 615
           D CN  SP    V  +  SNLC EI L        +    E A+C L ++NL A      
Sbjct: 418 DHCNTHSPFDPSVAPIKQSNLCLEIALPTKPLKNIDDPEGEIALCTLSALNLGA-----I 472

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  +L      AVR LDN++D   + I  A+  +   R +G+G++ F + L      Y+
Sbjct: 473 KDLSELEPLADLAVRALDNLLDYQDYPIISAQLGSMNRRTLGIGVINFANYLAKNGKKYS 532

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--GLLAEVR 733
              A  +   + E I F+ + AS+ LA+E+GA   F  + + +G+ PID+    L A   
Sbjct: 533 DGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSKGILPIDTYKRDLDAICS 592

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + L M+      W+ L+K +   G+RNS   A+ P+ T + I   +  I+P    + VK+
Sbjct: 593 EPLHMD------WEALRKDILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVKA 646

Query: 794 NMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           +  G    VV  F  +EL  RD ++  ++ ++  +DG                       
Sbjct: 647 SKDGQLKQVVPDF--DEL--RDSYE--LLWNMPNNDG----------------------- 677

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLMGLKTTYY 902
               ++     QK++DQA S N   D PS   G+K+       D +   A+ +G+KT YY
Sbjct: 678 ---YLQLVGIMQKFVDQAISANTNYD-PSRFEGRKVPMQTLLKDLL--GAYKLGVKTLYY 731

Query: 903 LRSRSATS 910
             +R   S
Sbjct: 732 HNTRDGAS 739


>gi|296113066|ref|YP_003627004.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|295920760|gb|ADG61111.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|326562609|gb|EGE12920.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 46P47B1]
 gi|326577114|gb|EGE27008.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis O35E]
          Length = 758

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 298/674 (44%), Gaps = 49/674 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR+ +    ++ P    H            +++ E 
Sbjct: 67  AAADLISVETPDYQYLAARLAIFHLRK-IAYGKFEPPHLYAH-----------VKHLTEQ 114

Query: 264 VK--ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
            K    +L +  +D +   L + + + RD    Y  ++ +  +Y +   +     E PQ 
Sbjct: 115 GKYDQHILADYSID-EFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
            ++ V M L     + ++      FY+  S+F+    TP +  SG R P  Q SSC L  
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIM--SGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE  AD    K  RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYE--ADENIRK--RKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L        N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL         D ++ A  I   VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGK--IEKLSDIEEPAELI---VRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D +       L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DT---YKKDLDSIC-TEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSG 797
           P    + +K++  G
Sbjct: 639 PPRGLVSIKASKDG 652


>gi|312262464|gb|ADQ52759.1| NrdA ribonucleotide reductase A subunit [Aeromonas phage PX29]
          Length = 744

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 299/663 (45%), Gaps = 44/663 (6%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET-ALIFSSRTLI 210
           G   SF+ ++L  I+  A +G + +    ++S    ++ +G+S  D++  A+ F++  + 
Sbjct: 8   GITESFDKQKLYRIITFATTGTR-IDPIEIMSGIMSSITNGMSTKDIQKLAIKFAADRIS 66

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            ++P+Y  V AR  +  LR++        P     H ++          +++G+    L 
Sbjct: 67  IEQPDYQYVAARLQMYALRKQAYNQF--DPPHLKRHTLEL---------VQDGIYDPDLA 115

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGL 328
               D +   L N + +ERDF   Y G+    ++Y       G   E PQ  +M VAM L
Sbjct: 116 TKWTDEEFSELNNYIIHERDFNLAYAGVMQFKEKYLAKDRSTGELYETPQMLYMLVAMCL 175

Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385
              E T++  +   FY++ S       TP L  +G R P  Q SSC      D+L  I  
Sbjct: 176 HQDEKTDRLAKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIESGDELDSINA 233

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
                        G+G +   +R  G+ I     +  G+IPF K       + +QGG R 
Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   Y   WH++VE+ L L+ N G +  R   ++    I  +F +R+  +   TLFSPD
Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKMFWERLKNDDYITLFSPD 353

Query: 506 -EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +  +L+DL+ K+     E YE   +   ++  ++I A  ++         TG  +  F 
Sbjct: 354 VQNGELYDLFYKDPVKFKELYEMLEEEPFVRK-KRIKASEIFNLFAQERTGTGRIYPMFI 412

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLGSINLLAHFANNQFDY 618
           D  N  +P +    +  SNLC EI L +       S E A+C L + NL A  +     Y
Sbjct: 413 DNVNSATPYKE--PIRQSNLCIEIALPTYPVKRDGSGEIALCTLAAYNLGAIES-----Y 465

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +   +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L    + Y+S  
Sbjct: 466 EDFLNVARAAVRALDNLLDYQDYPVVQALAAKK-RRALGIGVTNFAYFLAKNFVDYSSGN 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDEL 736
           A ++   +ME + F  + AS+ELA+ERGA      + W  G+ PID      +  V ++L
Sbjct: 525 ANKLVHRTMEMMQFANLVASMELAKERGANEWHHKTKWADGLLPIDWYNKNVDNIVPNDL 584

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            M+      W+ L+  +K  G+RN    A  P  + + I   +  I+P    +  K +  
Sbjct: 585 KMD------WEWLRAEIKKYGLRNDTLSAFMPCESSSQITNSTNGIEPPRALMSTKQSKD 638

Query: 797 GDF 799
           G F
Sbjct: 639 GVF 641


>gi|327189836|gb|EGE56974.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 734

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 189/664 (28%), Positives = 303/664 (45%), Gaps = 81/664 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 102 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 161

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 162 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 218

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 219 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 278

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++
Sbjct: 279 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVY 338

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 339 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN 396

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P   VG +  SNLC+EI   S + E               CNLGS+N+ A  A +  D+ 
Sbjct: 397 PI--VGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDTADFG 452

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 453 K---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 509

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIG 727
            V+  +     +++HAI AS  LA ERG ++  F+ S +  G +          P  + G
Sbjct: 510 GVDFTNIYFYTVTYHAIRASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKP--ATG 567

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +  + D+  ++  ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 568 KVQALFDDAGIHIPTQDDWAALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP--- 624

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843
                             +V++++ R              +G IG +      + +D   
Sbjct: 625 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLD 653

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 654 YYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWRKGIKTIYY 713

Query: 903 LRSR 906
           +R R
Sbjct: 714 IRLR 717


>gi|295698299|ref|YP_003602954.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291157020|gb|ADD79465.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 764

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 175/667 (26%), Positives = 298/667 (44%), Gaps = 47/667 (7%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           +G L   + K+++ ++  +  GLQ +S   +   +    Y+ +    +   +I +S  LI
Sbjct: 11  NGDLEKIDLKKIKRLITLSADGLQGISISKIQDLSCIQFYNKIQTKLIHQIIIKTSADLI 70

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             K P+Y  ++AR  +  LR++     +  P+   H +      +Y  R +E+       
Sbjct: 71  STKIPDYQYLSARLAISYLRKDAYGE-FNPPKLYQHVKNMVSIGKYDYRLLEDYSVEEF- 128

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMG 327
            + M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  ++ V+  
Sbjct: 129 -QKMDQF--------INHLRDMNFCYAAVKQLEGKYLVKDRVTGKIYESAQFLYILVSAC 179

Query: 328 LALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG 382
           L      K+ R +    FY+ +S+F     TP +  +G R P  Q SSC L    D L  
Sbjct: 180 L-FSIYPKDVRLIYVKRFYDAISTFKISLPTPIM--AGIRTPTRQFSSCVLIECDDSLDS 236

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I               G+G +   +R +G+ I        G IPF K       + +QGG
Sbjct: 237 INATASSIVKYVSQRAGIGINAGRIRAIGSPIRQGEAFHTGCIPFYKYFQAAVKSCSQGG 296

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+ +    TLF
Sbjct: 297 IRGGAATIFYPIWHLEVESLLVLKNNRGVESNRVRHLDYAVQINKLMYERLIRGEEITLF 356

Query: 503 SPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           SP +V DL+  +  +   FE  Y+ YE   +  +    +++ AV L+ KM+     TG  
Sbjct: 357 SPSDVPDLYSCFFSDQDKFENLYKKYELDQNIRK----KRVKAVDLFSKMMQERSSTGRT 412

Query: 560 WITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAH 610
           +I   D CN  SP    +  +  SNLC E+ L        N    E A+C L + NL   
Sbjct: 413 YIQNVDHCNTHSPFDSKIAPIRQSNLCLEVLLPTHPLYNINDQEGEIALCTLSAFNL--- 469

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   ++L       VR LD ++D   + I  AKKS+ + R +G+G++ +   L   
Sbjct: 470 --GEIRSLEELEDLSDLIVRALDALLDYQDYPILAAKKSSISRRTLGIGVINYAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           H+ Y+   A  +  ++ E I ++ + AS +LA+E+GA S F  + + +G+ PID+     
Sbjct: 528 HVKYSDSSANNLTHKTFEAIQYYLLKASNQLAKEKGACSWFHHTNYSKGILPIDN---YK 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  D L  +      W  L++R+K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 585 KSLDHLT-SEPLHYDWKSLRERIKKYGLRNSTLSAVMPSETSSQISNATNGIEPPRGFMS 643

Query: 791 VKSNMSG 797
           +K +  G
Sbjct: 644 IKVSKDG 650


>gi|86359306|ref|YP_471198.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86283408|gb|ABC92471.1| ribonucleotide-diphosphate reductase, alpha subunit protein
           [Rhizobium etli CFN 42]
          Length = 693

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 188/664 (28%), Positives = 298/664 (44%), Gaps = 81/664 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 61  FNFVRDLFDQAYARQFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 120

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 121 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++
Sbjct: 238 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVY 297

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 298 GMPFTEISVTEKYREMVADARISK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + E               CNLGS+N+ A   +  F   
Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAAMDSGDF--- 410

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI TA+R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 411 --GKTIETAIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 468

Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIG 727
            V   +     +++HAI AS  LA ERGA +  F+ S +  G +          P  +  
Sbjct: 469 GVNFTNIYFYTVTYHAIRASNLLAVERGASFRGFENSKYASGDYFDKYTEQEWKP--ATE 526

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +  + D+  ++  ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 527 KVQALFDKSGIHIPTQDDWVALKTGVMTTGLYNQNLQAVPPTGSISYINHSTSSIHP--- 583

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKK 843
                             +V++++ R              +G IG +      + DD   
Sbjct: 584 ------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTDDNLD 612

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSL-NLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL + + D  + + ++     AW  G+KT YY
Sbjct: 613 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTSFFRDTATTRDINKTQIYAWKKGIKTIYY 672

Query: 903 LRSR 906
           +R R
Sbjct: 673 IRLR 676


>gi|227496666|ref|ZP_03926942.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
 gi|226833814|gb|EEH66197.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
          Length = 717

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 188/654 (28%), Positives = 291/654 (44%), Gaps = 79/654 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G R    + F  RV+M  LAL + + E+ A++  
Sbjct: 96  YAHKFRFQTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVSMVALALADGD-EQLALDLV 152

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + +  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+  
Sbjct: 153 EEMMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVAL 212

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 213 LLTNLREMGAPIKRIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 272

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +         LFSP    D+  +YG  F    
Sbjct: 273 LDTKRENADEKIRIKTLSLGVVIPDITFELAKNKEPMYLFSP---YDVERVYGVPFSDIS 329

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   I   R I A   ++ +  + FE+G+P++ F+D  N  +P +  G V 
Sbjct: 330 VTEKYREMVDDPRIHKTR-IDARQFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVI 386

Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI       TLN       V     CNLGS+N+         D      TIRTA
Sbjct: 387 MSNLCSEILQVSEASTLNEDLSFAHVGKDISCNLGSLNIA-----KTMDSPDFMRTIRTA 441

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           VR L  V D ++  ++    + NH   AIGLG M     L    I Y S E ++  +   
Sbjct: 442 VRGLTAVSDQVDLPSVPSINRGNHESHAIGLGQMNLHGYLARERIFYGSEEGLDFTNVYF 501

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDEL 736
             + + A++A+ ELA ERG ++  F+ S +  G F          P+     + E+ +  
Sbjct: 502 ACVLYAALTATNELAVERGESFVGFEDSDYYSGAFFEKYTAQDFLPVTD--KVKELFERS 559

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNM 795
           ++   +R  W  L KR++  GM N N  A+ PT +I+ I   + SI P    + + K   
Sbjct: 560 SITVPTREDWAALAKRIRETGMYNRNLQAVPPTGSISYINNSTSSIHPIVAKIEIRKEGK 619

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G       ++ NE                       N+E   D        A+EI P  
Sbjct: 620 IGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGPEK 648

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A
Sbjct: 649 IIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTLYYIRLRQA 702


>gi|323359289|ref|YP_004225685.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
 gi|323275660|dbj|BAJ75805.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
          Length = 718

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 191/660 (28%), Positives = 298/660 (45%), Gaps = 89/660 (13%)

Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRA 339
           ND  Y   F FE +LG    Y  Y L   +G R    + F  RV M  LAL + + ++ A
Sbjct: 95  NDRAYGAKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVVMTALALADGD-QRLA 151

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           V+  + + S  F  +TPT  N+G  +  +L SCFL  + D++  I   +     L+K  G
Sbjct: 152 VQLVDEIISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRGG 211

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H D
Sbjct: 212 GVALLLSNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPD 271

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +         LFSP    D+  +YGK F
Sbjct: 272 ILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNGEDMYLFSP---YDVEKVYGKPF 328

Query: 519 -EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            +I+  E Y    D   IK   KI+A   ++ +  + FE+G+P+I F+D  N  +P    
Sbjct: 329 GDISVTEKYREMVDDPRIKK-TKINAREFFQTLAEIQFESGYPYIMFEDTVNKANPI--A 385

Query: 577 GVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLAST 624
           G ++ SNLC+EI    T  + +E+ +         CNLGS+N+         D   L  T
Sbjct: 386 GRINMSNLCSEILQVNTPTTYNEDLSYDTIGKDISCNLGSMNIAL-----AMDGGDLGLT 440

Query: 625 IRTAVRVLDNVIDINCH--TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           + TA+R L   + +  H  ++   +  N    AIGLG M     L   H+ Y S E ++ 
Sbjct: 441 VETAIRAL-TAVSVQSHIASVRSIEDGNDRSHAIGLGQMNLHGYLAREHVYYGSEEGIDF 499

Query: 683 ADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +     + FHA+ AS  LA ERG A+  F+ S +  G F         +  D++   +T
Sbjct: 500 TNIYFYTVLFHALRASNRLAIERGTAFDGFENSTYASGEF-------FDKYTDQVWEPQT 552

Query: 742 SR---------LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           ++         +P    W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 553 AKAKELFAGVQIPTQDDWRELKASVQAHGIYNQNLQAVPPTGSISYINNSTSSIHPIASK 612

Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + + K    G       F+ NE                       N+E   D        
Sbjct: 613 IEIRKEGKLGRVYYPAPFMTNE-----------------------NLEYYQD-------- 641

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 642 AYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQIYAWRKGIKTIYYIRLR 701


>gi|156932795|ref|YP_001436711.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531049|gb|ABU75875.1| hypothetical protein ESA_00591 [Cronobacter sakazakii ATCC BAA-894]
          Length = 706

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 211/757 (27%), Positives = 331/757 (43%), Gaps = 104/757 (13%)

Query: 209 LIEKEPNYAKVTA---------RFLLEKLRREV--LTTVYKKPQKAT----HHEMQCLYP 253
           +++  P+Y  + A         R   EK R  V    T +  P+  T    H  +  L  
Sbjct: 1   MLQTPPDYHALNAMLNLYDADGRIQFEKDREAVAAFMTAHVAPRSVTFPDTHARLAYLVS 60

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLAN--DLKYERDFAFE-YLGLQILYDRYFLH-I 309
           E    Y +E V  R        +D  ++A   D  +   F F+ +LG    Y  Y L   
Sbjct: 61  E---GYYDENVLRR--------YDASFVAGLFDEAHRYGFTFKTFLGAWKFYTSYTLKTF 109

Query: 310 NGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-P 366
           +G R     P    M VA+ LA  +   E  A +  + + S  F  +TPT  N G +   
Sbjct: 110 DGKRYLEHFPDRACM-VALTLACGD---ETLARQILDEILSGRFQPATPTFLNCGKKQRG 165

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP
Sbjct: 166 ELVSCFLLRIEDNMESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIP 225

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 226 VMKMLEDAFSYANQLGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 285

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVAL 545
           D+  +    NA   LFSP    D+  +YGK F +I+      Q    E    R ISA  L
Sbjct: 286 DITFELAKANAQMALFSP---YDVERIYGKPFGDISVSEMYSQLVEDERIRKRYISAREL 342

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE--------- 595
           ++++  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI  +NS+S          
Sbjct: 343 FQRLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYAT 400

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652
                 CNLGS+N+ AH      D      T+  AVR L  V D++   ++   +  N  
Sbjct: 401 TGHDISCNLGSLNI-AH----TMDSPDFGRTVEVAVRALTAVSDMSHIRSVPSIEAGNAA 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSF 711
             AIGLG M     L    I Y SPE ++  +     +++HA++ S++LA+ERG  +  F
Sbjct: 456 SHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTVTWHALNTSMKLARERGERFEGF 515

Query: 712 KGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLP----WDELKKRVKTIGMRNSNC 763
           + S +  G +    +  +   R     EL       LP    W  L+  V   G+ N N 
Sbjct: 516 EASRYASGEYFDKYLSQIWTPRTARVAELFARAGITLPTPEMWRALRDDVMRHGLYNRNL 575

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + + K    G       F+ NE             
Sbjct: 576 QAVPPTGSISYINHATSSIHPIVSKIEIRKEGKIGRVYYPAPFMTNE------------- 622

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                     N+         ++  A+EI P  +I++ +   + +DQ  SL L+  D  +
Sbjct: 623 ----------NL--------SLYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTAT 664

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 665 TRDINKAQIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 700


>gi|299779175|ref|YP_003734369.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
 gi|298105904|gb|ADI55548.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
          Length = 755

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 208/798 (26%), Positives = 340/798 (42%), Gaps = 94/798 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++   + 
Sbjct: 5   MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKSHLRDGMTTKDIQNLTVK 63

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258
            +  LI  +EP+Y  V A+ L+  LR+EV      +P+    H   C+      PE   R
Sbjct: 64  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 121

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           Y  E              ++ +L + +K+ERDF   Y G   L ++Y +     G   E 
Sbjct: 122 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 167

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           PQ  F  + +G+AL + E   R    + FY+ +S+      TP +  + T   Q SSC +
Sbjct: 168 PQ--FAIMCIGMALHQEEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 225

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R  G+ I     K  GVIPF K    
Sbjct: 226 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 285

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R 
Sbjct: 286 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 345

Query: 494 TQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +N   TLFSP E+S +L+  Y ++ +   E YE       I+  ++I A  L+   +T 
Sbjct: 346 GKNDYITLFSPHEMSGELYHSYFEDQDRFRELYEAAEKDPSIRK-KRIKARDLFELFMTE 404

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606
              T   +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  
Sbjct: 405 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 462

Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
               F  + FD+   DK+       VR LDN++D   + + +A K+    R +G+G+  +
Sbjct: 463 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 517

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PI
Sbjct: 518 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 575

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +  D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+
Sbjct: 576 D---WYNKKIDQIAAPNYV-CDWTSLREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 631

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G+F  V   + N    + L+D A     K      GN         K
Sbjct: 632 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYAWTLAKK------GN---------K 673

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWL 894
            + T   I             KW+ Q+ S N Y D    P GK        D +Y   W 
Sbjct: 674 PYLTQVVI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLLY--FWY 720

Query: 895 MGLKTTYYLRSRSATSVE 912
            G K  YY  +R  +  +
Sbjct: 721 YGGKNLYYHNTRDGSGTD 738


>gi|123441278|ref|YP_001005265.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088239|emb|CAL11028.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 693

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 188/690 (27%), Positives = 314/690 (45%), Gaps = 79/690 (11%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  VEEGYYEKDVLEKY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  VE    + +  F  +TPT  N G +   +L SCFL  
Sbjct: 105 YEDRVCMVALTLAAGNQQVARDLVE---EIITGRFQPATPTFLNCGKKQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  A+     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 162 IEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  ++ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEDMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      +I TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 398 SLNI-AHI----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721
               L    I Y S EA++  +     +++HAI AS +LA ERG+ +  F  S +  G +
Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHY 512

Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I          ++ +  +  ++   +  W  L++ V   G+ N N  A+ PT +I+
Sbjct: 513 FTKYIEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 572

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P                     +V+ ++ R              +G IG 
Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 598

Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 599 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKA 658

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 659 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|170765802|ref|ZP_02900613.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170124948|gb|EDS93879.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 714

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 195/689 (28%), Positives = 315/689 (45%), Gaps = 80/689 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEM 316
           Y +EGV    L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R   
Sbjct: 71  YYDEGV----LNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--Y 122

Query: 317 PQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374
            + F  RV M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL 
Sbjct: 123 LEDFADRVTMVALTLAQGD-ETLATQLADEMLSGRFQPATPTFLNCGKQQRGELVSCFLL 181

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D 
Sbjct: 182 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 241

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      
Sbjct: 242 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAK 301

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +NA   LFSP    D+  +YGK F +IA   Y  +    +    + I+A   ++++  + 
Sbjct: 302 ENAQMALFSP---YDVERVYGKPFADIAISEYYDELVANKHIRKKYINARDFFQRLAEIQ 358

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCN 601
           FE+G+P+I ++D  N  +P    G ++ SNLC+EI  +NS+S                CN
Sbjct: 359 FESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASAYDENLDYARTGHDISCN 416

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N +AH      D    A T+ TA+R L  V D+ +  ++   +  N    AIGLG 
Sbjct: 417 LGSLN-IAH----TMDSPNFARTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 471

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G
Sbjct: 472 MNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASG 531

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +          + E+    ++   +R  W +L+  V   G+ N N  A+ PT +
Sbjct: 532 EYFSQYLQGNWQPKTAKVGELFAHSSITLPTREMWAQLRDDVMRYGIYNQNIQAVPPTGS 591

Query: 772 IANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + + K   +G       F+ NE       + A+  D       
Sbjct: 592 ISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------- 637

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                            A+EI    +I++ +   + +DQ  SL L+  D  + + ++   
Sbjct: 638 -----------------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 680

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             AW  G+KT YY+R R   ++E + ++G
Sbjct: 681 IYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|330004286|ref|ZP_08304844.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328536658|gb|EGF62980.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 775

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 214/802 (26%), Positives = 341/802 (42%), Gaps = 104/802 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++I+  +G+  + + ++   +V  A  G+  VS+  V      ++ DG++ S +  ALI 
Sbjct: 2   IRIIKRNGSAEALSEEKYNRVVMWATDGVDGVSASAVAMGAAASIVDGMTTSQVHDALIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + PNY++V AR  + K+R++             H + +  YP+++   ++  
Sbjct: 62  AAADLISADSPNYSQVAARLSIFKIRKDA------------HGQYE--YPDFYEHILKNV 107

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
            +     E M  +   ++  L   +K ERD  F Y     L  +Y +   +NG   E PQ
Sbjct: 108 TRGVYDSEIMHKYSCEEIDELGAYMKPERDDNFGYAATTQLRGKYLVQHRVNGEIYESPQ 167

Query: 319 AFFMRVAMGLA--LKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
             +M V M L       +  K  +E    FY++ S+F     TP +  +G R P  Q SS
Sbjct: 168 HIYMLVGMCLYQDWNNGDMGKTRLEMVKGFYDVTSTFKLSLPTPIM--AGVRTPTRQFSS 225

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G ++  +R LG+ I        GVIPFLK+
Sbjct: 226 CVLIESGDSLKSINATTSAIVEYISQRAGIGVNFGSIRALGSPIRNGEATHTGVIPFLKL 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA  AY   WH++    L L+ N G D  R   M+    +  L  
Sbjct: 286 FQAAVKSCSQGGVRGGAATAYYPLWHLEANSLLVLKNNRGVDSNRVRHMDYGVELNRLMY 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVAL 545
           +R+ +    TLFSP +V  L + +     EFE  Y  YE           RK  + AV L
Sbjct: 346 RRLIEGGAITLFSPHDVPGLLNAFYADQDEFERLYVQYENDPS------IRKESVPAVDL 399

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEE 596
           +  ++     TG  +I   D  N      + V  +  SNLC EI L        +  + E
Sbjct: 400 FSSLMQERASTGRIYIANIDHMNTHGAFDEAVAPIKQSNLCAEIALPTKPLAFTDDPNGE 459

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            A+C L + NL A    +  D +++A     AV  LD ++D   + +  A+      R++
Sbjct: 460 IALCTLSAFNLGA--LESLADLEEVAF---YAVSALDCLLDYQDYPMFAAETPAKARRSL 514

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+  F   L      Y+  +  ++  E+ E + F+ + AS  LA ++GA   F  + +
Sbjct: 515 GIGVTNFAYWLAKNGAKYSGVDGNKLVHETFEAVQFYLLKASNLLASDKGACEWFGQTKY 574

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+ PID      +   EL  N    L WD L+K ++  G+RNS   A  P  T + I 
Sbjct: 575 AKGLLPIDHYRKQLDA-SELNANHPLLLDWDGLRKDIERYGLRNSTLSAQMPCETSSQIT 633

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-----RDLWDEAMISDLKYHDGSI 831
             +  I+P    + VKS+  G    V   +V E  +       LWD              
Sbjct: 634 NSTNGIEPPRGPVSVKSSKDG----VVKMVVPEFSRIGDAYEYLWD-------------- 675

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----K 884
                I D+   +   A               QK+IDQ+ S N   D     SG+    K
Sbjct: 676 -----IEDNFGYLTKVAI-------------MQKFIDQSISANTNYDPARFASGRVPMQK 717

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           +      A+ MG+KT YY  +R
Sbjct: 718 MLTDLLDAYRMGVKTLYYHNTR 739


>gi|315605372|ref|ZP_07880415.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312941|gb|EFU61015.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 718

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 192/660 (29%), Positives = 296/660 (44%), Gaps = 72/660 (10%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F F  +LG    Y  Y L   +G R    + F  RVAM  L L   + E  A +F 
Sbjct: 97  YAHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVAMVSLYLARGDIE-LARQFV 153

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + +  F  +TPT  N+G     +L SCFL  + D++  I   +     L+K  GG+  
Sbjct: 154 DEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 214 QLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   E  +  
Sbjct: 274 LDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSPYDVERVYGVPFSEISVT- 332

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D G I   RKI+A   ++ +  + FE+G+P+I F+D  N  +P +  G +  S
Sbjct: 333 EKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYPYIVFEDTVNAANPIK--GRITMS 389

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI       T N       V     CNLGS+N+         D    + TI TA+R
Sbjct: 390 NLCSEILQVSEASTYNDDLSYAHVGKDISCNLGSLNIA-----KTMDSPDFSKTIETAIR 444

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ +   +    + N    AIGLG M     L   H+ Y S EA++  +     
Sbjct: 445 GLTAVSDLSDIGAVPSIARGNAMSHAIGLGQMNLHGYLAREHVYYGSEEALDFTNIYFMT 504

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE-----VRDELA---MNR 740
           + + AI AS  +A+ERG  +  F+ S +  G F    I    E      R+ LA   ++ 
Sbjct: 505 VLYEAIKASCTIARERGERFEGFEDSTYASGEFFRKYIDEAWEPTTDKCRELLAASSIHV 564

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            ++  W+ L   V   GM N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 565 PTQQDWEALAADVARYGMYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRV 624

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                ++ NE             +L+Y+                    A+EI P  +I+ 
Sbjct: 625 YYPAPYMSNE-------------NLQYYQ------------------DAYEIGPEKIIDI 653

Query: 860 ASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L Y D  + + L+  Y  AW  G+KT YY+R R   ++E + ++G
Sbjct: 654 YAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWRKGIKTLYYMRLRQ-MALEGTEVEG 712


>gi|255327221|ref|ZP_05368296.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295839|gb|EET75181.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 726

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 186/671 (27%), Positives = 302/671 (45%), Gaps = 72/671 (10%)

Query: 276 FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
           ++  ++ N  K  Y   F F  +LG    Y  Y L   +G R    + F  RV M   L 
Sbjct: 94  YNFQFIKNLFKRAYAVKFRFPTFLGAFKFYTSYALKTFDGQR--YLERFEDRVCMVALLL 151

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
               EK A +  + + S  F  +TPT  N+G +   +L SCFL  + D++  I  ++   
Sbjct: 152 AEGNEKLAEDIVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIGRSINSA 211

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 212 LQLSKRGGGVAFALTNLRESGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 271

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  +
Sbjct: 272 YLHAHHPDIYAFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERI 331

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   +  ++ + YE   D    K   KI+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 332 YGVPFSDINVSEKYYEMVDDARITK--SKINAREFFQTIAEIQFESGYPYVMFEDTVNRA 389

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFD 617
           +P    G +  SNLC+EI L  S   T               CNLGS+N+         D
Sbjct: 390 NPI--AGKIIMSNLCSEI-LQVSEPSTYHADLGYETVGKDISCNLGSLNIAL-----TMD 441

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            D    T+ TA+R L +V D  +  ++   ++ N    A+GLG M     L   H+ Y S
Sbjct: 442 GDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGNGMSHAVGLGQMNLHGYLAREHVYYGS 501

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLA 730
            EA++  +     +++HAI AS+++A+ERG  +  F+ S +  G F    I         
Sbjct: 502 EEALDFTNMYFYTVAYHAIRASMQIAKERGQRFEGFENSKYASGEFFAKYIEKEWAPQTE 561

Query: 731 EVRDELAMNRT-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R+  A +   +R  W +L   V   GM N N  A+ PT +I+ I G + SI P    +
Sbjct: 562 RTRELFAKHHIPTREEWIQLAADVAQYGMYNQNLQAVPPTGSISYINGSTSSIHPIASKI 621

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K    G       ++ NE             +L+Y+  S                  
Sbjct: 622 EIRKEGKLGRVYYPAPYMTNE-------------NLEYYQDS------------------ 650

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 651 YEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYIRLRQ 710

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 711 -MALEGTEVEG 720


>gi|87120531|ref|ZP_01076425.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
 gi|86164174|gb|EAQ65445.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
          Length = 755

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 214/797 (26%), Positives = 338/797 (42%), Gaps = 101/797 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G   S N +++  +V  A  GL +VS   V  +     ++G+  +D+   LI 
Sbjct: 4   LTVTKRNGETESINLEKIHKVVTWAAEGLDNVSVSQVELKAQIQFFEGIKTTDIHETLIK 63

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR++     ++ P    H  +Q L  +   RY  E 
Sbjct: 64  SAADLISEDTPDYQYMAARLAIFHLRKKAFGE-FEPPHLLAH--VQNLVEQK--RYDAEI 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
           + A     S  +FD   L   L + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 119 LSAY----SEAEFD--QLNGFLDHSRDMNFSYAAVKQLEGKYLVQNRVTGDIYESPQFIY 172

Query: 322 MRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L      + +      FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 173 LLVAACLFANYDASVRLDYIRRFYDAVSNFKISLPTPIM--AGIRTPTRQFSSCVLIECG 230

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 231 DSLDSINATSSAIVKYVSQRAGIGINAGAIRALGSAIRGGEAFHTGCIPFYKHFQTAVKS 290

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+    
Sbjct: 291 CSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLISGG 350

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +    +EFE  Y  YE  AD    K  + I A  L+    +   
Sbjct: 351 NITLFSPSDVPGLYDAFFADQEEFERLYVQYE--ADDSVRK--QTIKASELFTLFASERA 406

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSI 605
            TG  ++   D CN  SP    V  V  SNLC EI L +           E A+C L + 
Sbjct: 407 STGRIYLQNVDHCNTHSPFDPAVAPVKQSNLCLEIALPTKPLQHIYDEKGEIALCTLSAF 466

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL      +    D+L       VR LD+++D   + +  A+ +    R +G+G++ +  
Sbjct: 467 NL-----GSLESLDELEELSDLIVRALDSLLDYQNYPVPAAQSATDLRRTLGVGVINYAY 521

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A E+  ++ E I ++ + AS  L++ERGA  +F  + + +G+ PIDS
Sbjct: 522 YLAKNGVRYSDGSANELTHKTFEAIQYNLLKASNNLSKERGACQAFDETTYAKGILPIDS 581

Query: 726 IGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                  + E+    +  L   W+ L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 582 ------YKKEIDKVCSPELYYDWETLRKDIVEHGLRNSTLTALMPSETSSQIHNATNGIE 635

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G            LKQ                  +   ER+ D    
Sbjct: 636 PPRGFVSVKASKDGI-----------LKQ-----------------VVPEFERLKD---- 663

Query: 844 IHATAFEIDPMWLIES-------ASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ- 891
                 E + +W I S           QK++DQA S N   D    E S   +  + +  
Sbjct: 664 ------EYELLWSIPSNDGYLQLVGIMQKFVDQAISANTNYDPAKFESSKVPMKLLLKDL 717

Query: 892 --AWLMGLKTTYYLRSR 906
             A+ +G+KT YY  +R
Sbjct: 718 LTAYKLGIKTLYYHNTR 734


>gi|157371958|ref|YP_001479947.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323722|gb|ABV42819.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 714

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 191/691 (27%), Positives = 310/691 (44%), Gaps = 84/691 (12%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315
           Y E+ V A+       DF  +       Y + F FE +LG    Y  Y L   +G R +E
Sbjct: 71  YYEQSVLAQY------DFAFIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLE 124

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374
             +     VAM LA  +T   +  VE    + S  F  +TPT  N G +   +L SCFL 
Sbjct: 125 RYEDRVCMVAMTLAAGDTALAQDLVE---EMISGRFQPATPTFLNCGKQQRGELVSCFLL 181

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    T +R +GA I     +S GVIP +K+  D 
Sbjct: 182 RIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDA 241

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   
Sbjct: 242 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAK 301

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N    LFSP +V  ++ +   E  ++ E Y    D   I+  R I+A   ++ +  + F
Sbjct: 302 NNEEMYLFSPYDVEQVYGVPFSEISVS-EKYREMVDDKRIRKSR-INAREFFQVLAEIQF 359

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602
           E+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   CNL
Sbjct: 360 ESGYPYMMFEDTVNRENPI--AGRINMSNLCSEILQVNRASTYHDDLSYDQVGKDISCNL 417

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+         D       + TA+R L  V D+ +  ++    + N +  AIGLG M
Sbjct: 418 GSLNIA-----KTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQM 472

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                L    I Y S E ++  +     +++HAI AS +LA ERG A+  F+ S +  G 
Sbjct: 473 NLHGYLARERIFYGSEEGIDFTNIYFYAVAYHAIRASNQLAIERGSAFGGFEDSTYASGE 532

Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +       D +     VR   A   +    R  W  L++ V   G+ N N  A+ PT +I
Sbjct: 533 YFSKYTERDWLPQTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSI 592

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   + SI P                     +V+ ++ R              +G IG
Sbjct: 593 SYINNSTSSIHP---------------------IVSRIEIR-------------KEGKIG 618

Query: 833 NI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
            +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 619 RVYYPAPYMTNDNLEYYQDAYDIGPEKIIDTYAAASQHVDQGLSLTLFFRDTATTRDINR 678

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               AW  G+KT YY+R R   ++E + ++G
Sbjct: 679 AQIYAWRKGIKTIYYIRLRQ-MALEGTEVQG 708


>gi|295134783|ref|YP_003585459.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
 gi|294982798|gb|ADF53263.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
          Length = 564

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 187/642 (29%), Positives = 283/642 (44%), Gaps = 116/642 (18%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A++ K +R +       QIL   Y L     + E  ++   R+A   A K   K + A 
Sbjct: 11  IADEPKNKRLWWLNDESQQILNRGYLL-----KGETVKSAIERIANASA-KRLYKPELAE 64

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            F  ++       S+P   N GT      SCF   VPD++ GI   L E  M  K  GG 
Sbjct: 65  AFIEMIERGWMSLSSPIWANMGTERGLPISCFNVYVPDNIEGITHKLGEVIMQTKIGGGT 124

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +RG G+ +   NGKS G   F+K+ +     ++QGG R+GA  AYL+  H D++
Sbjct: 125 SGYFGELRGRGSAVT-DNGKSSGATSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIK 183

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL++ KN G+      ++     +PD +M+ + +                D+  +E   
Sbjct: 184 EFLEI-KNIGNP---IQNLFYGVCVPDYWMQEMIEG---------------DMEKRE--- 221

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
                                   +W K+L    + G P+I FKD  N   PQ +     
Sbjct: 222 ------------------------IWAKVLESRQQKGLPYILFKDNINRFKPQVYKDKNR 257

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +HSSNLC+EI L S+ +E+ +C L S+NL        +D  K    ++ A+  LD V+ 
Sbjct: 258 TIHSSNLCSEIALPSTEDESFICCLSSMNL------ELYDEWKDTEAVKLAIYFLDGVLQ 311

Query: 638 I------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                    H +  A +    HRA+GLG MG+ S L    IP+    A  +  +  E IS
Sbjct: 312 EFIAKTEGNHYLASANRFAKNHRALGLGAMGWHSYLQKNRIPFEGMRAKGLTHQIFEDIS 371

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS ELA   G     KG                                      
Sbjct: 372 AKATKASKELATIYGEPEMLKG-------------------------------------- 393

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                G+RN+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L
Sbjct: 394 ----YGLRNTTLMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLAKGNFMRKNKYLKQLL 449

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++ L +E     +  H GS+ ++E +  + K I  T  EI  + +I+ AS RQK+IDQA
Sbjct: 450 EEKGLDNEDTWRSIMLHHGSVQHLETLTQEEKDIFKTFKEISQLEIIQQASVRQKFIDQA 509

Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           QSLNL +  P+G   + ++ +  +AW +G+KT YY RS+S +
Sbjct: 510 QSLNLNI--PAGVPVRDVNQLMIEAWKLGVKTLYYQRSQSVS 549


>gi|238762670|ref|ZP_04623639.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238698975|gb|EEP91723.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 693

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 193/694 (27%), Positives = 314/694 (45%), Gaps = 87/694 (12%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  VEEGYYEKEVLERY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  VE    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 105 YEDRVCLVALTLAAGNQQVARDLVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +K+  D  
Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  ++ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEEMYLFSPYDVERVYGVPMSEISVS-EKYREMVDDKRIRK-SKIKAREFFQILAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D      +I TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 398 SLNIA-----QTMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    I Y S EA++  +     +++HAI AS +LA ERG  S FKG  +DQ  + 
Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERG--SHFKG--FDQSTYA 508

Query: 723 IDSI----------GLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                            A+VR    E  ++  ++  W  L++ V   G+ N N  A+ PT
Sbjct: 509 SGHYFNKYTEQSWQPKTAKVRSLFAEAGISVPNQQDWVALRQSVMAHGIYNQNLQAVPPT 568

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P                     +V+ ++ R              +G
Sbjct: 569 GSISYINHSTSSIHP---------------------IVSPIEIRK-------------EG 594

Query: 830 SIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
            IG +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 595 KIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 655 INKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|331684293|ref|ZP_08384885.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|331077908|gb|EGI49114.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 714

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDIERVYGKPFADVAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|308177565|ref|YP_003916971.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307745028|emb|CBT76000.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 712

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 302/659 (45%), Gaps = 72/659 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           + + F FE +LG    Y  Y L   +G R +E  +     VA+ LA  +   EK A+   
Sbjct: 93  FGKKFRFETFLGAFKFYTSYTLKTFDGKRYLERYEDRVCMVALHLARGD---EKLALHLV 149

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+  
Sbjct: 150 DEIIEGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARAVNSSLQLSKRGGGVAL 209

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 210 SLTNLREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIYRF 269

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F EI+
Sbjct: 270 LDTKRENADEKIRIKTLSLGVVIPDVTFELARKNEDMYLFSP---YDVERVYGVPFSEIS 326

Query: 522 Y-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   IK   KISA   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 327 VTEKYYDMVDDARIKK-TKISAREFFQTLAEIQFESGYPYIMFEDTVNKANPI--AGRIT 383

Query: 581 SSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   SS+ E +             CNLGS+N+         D   LA+++  A
Sbjct: 384 MSNLCSEILQVSSASEFSDDLSYKTVGKDISCNLGSMNIA-----KAMDGKDLATSVDIA 438

Query: 629 VRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D++   ++      N    AIGLG M     L   HI Y S E ++  +   
Sbjct: 439 IRALSAVSDMSYIASVPSIADGNRKSHAIGLGQMNLHGFLAREHIYYGSEEGIDFTNIYF 498

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNR 740
             I FHA++AS ++A ERG  + +F+ S +  G F       + +     VR+    M+ 
Sbjct: 499 YTILFHALTASNKIAMERGETFDNFENSKYASGEFFDKYTDQEWVPATERVRELFDGMHI 558

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++        
Sbjct: 559 PTQEDWKTLKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRK------- 611

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y+     N E I       +  A+EI    +I++ 
Sbjct: 612 -----------------EGKIGRV-YYPAPYMNNENI-----DFYEDAYEIGYEKIIDTY 648

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 649 AAATQHVDQGLSLTLFFKDTVTTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEVEG 706


>gi|227888209|ref|ZP_04006014.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300986154|ref|ZP_07177744.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301050517|ref|ZP_07197393.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|227834849|gb|EEJ45315.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300297773|gb|EFJ54158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300407908|gb|EFJ91446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|307554651|gb|ADN47426.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ABU 83972]
 gi|315290986|gb|EFU50351.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
          Length = 701

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 298 P---YDVERVYGKPFADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIM 354

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L  
Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATS 587

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695


>gi|157148213|ref|YP_001455532.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157085418|gb|ABV15096.1| hypothetical protein CKO_04024 [Citrobacter koseri ATCC BAA-895]
          Length = 706

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 191/662 (28%), Positives = 302/662 (45%), Gaps = 84/662 (12%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           F F+ +LG    Y  Y L   +G R    + F  RV M         E  A++  + + S
Sbjct: 89  FRFQTFLGAWKYYTSYTLKTFDGKR--YLEDFEDRVTMVALTLAQGNEALAMQLTDEILS 146

Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + +
Sbjct: 147 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 206

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 207 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 266

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENY 525
              D++ R   ++    IPD+  +   +NA   LFSP    D+  +YGK F +IA  E Y
Sbjct: 267 ENADEKIRIKTLSLGVVIPDVTFRLAKENAQMALFSP---YDVERIYGKPFGDIAISERY 323

Query: 526 -ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  AD    K +  I+A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 324 DELLADERVRKQY--INAREFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 379

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+S                CNLGS+N +AH      D      T+ TA+R L
Sbjct: 380 CSEILQVNSASTYDENLDYAQTGHDISCNLGSLN-IAH----TMDSPNFGRTVETAIRGL 434

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     ++
Sbjct: 435 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTVT 494

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSI-GLLAEVRDELAM 738
           +HA++ S+ +A+ERG  ++ FK S +  G +             D++  L A       M
Sbjct: 495 WHALNTSMMMARERGKTFAGFKQSRYASGEYFEQYLQGDWQPKTDTVRALFARS----GM 550

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797
               R  W  L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G
Sbjct: 551 TLPGREMWARLRDEVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTG 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ NE                       N++   D        A+EI P  +I
Sbjct: 611 RVYYPAPFMTNE-----------------------NLDMYQD--------AYEIGPEKII 639

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + +
Sbjct: 640 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEI 698

Query: 917 KG 918
           +G
Sbjct: 699 EG 700


>gi|221102509|ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reductase family member
           (rnr-1), partial [Hydra magnipapillata]
          Length = 428

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 222/455 (48%), Gaps = 60/455 (13%)

Query: 270 HESMMDFDLVYLAN----DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           H+   + DLV   +     L Y RD      G  +L DRY L       E  QA F RVA
Sbjct: 11  HQKAAEKDLVLKVDPKQITLDYTRDAYLTEFGKAVLEDRYLLEG-----ETYQAMFARVA 65

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
              A  + E  KR    Y+ +S   FM STP L N G +     SCFL TV D+L GI  
Sbjct: 66  CAFA-DDLEHAKR---LYDYISKLWFMPSTPILSNGGAKRGLPISCFLNTVTDNLDGIIK 121

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              EN +LA   GG+G  W  VR LG  + G  G+S G+IPF++V +   +A++QG  R+
Sbjct: 122 TWNENVLLASNGGGIGTYWGDVRSLGESV-GRAGESSGIIPFIRVMDSQTLAISQGSLRR 180

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+   YL+  H ++EEF+D+RK +GD  R++ +++    I D FM+ V  N  + L SP 
Sbjct: 181 GSAAVYLDIHHPEIEEFVDIRKPSGDFNRKSLNLHHGVNITDKFMQAVKHNKPFELLSPK 240

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                                        KV + + A  L++K+L    +TG P++ F D
Sbjct: 241 TK---------------------------KVVKTVDARLLFQKILETRMQTGEPYLVFTD 273

Query: 566 PCNIRSP--QQHVGV-VHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHFANNQFD 617
             N   P  Q+ +G+ V  SNLC+EI L +      +E TAVC L S+NL       ++D
Sbjct: 274 TVNKSLPKHQRELGLKVKMSNLCSEILLPTGIDHLGNERTAVCCLSSLNL------EKWD 327

Query: 618 -YDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            +      I   +R LDNV    ID     + +AK S    R++GLG+MGF S L   +I
Sbjct: 328 EWHDHPLMIEDILRFLDNVLQTYIDEAPEGMARAKYSATRERSVGLGVMGFHSFLQAKNI 387

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           P+ S  A          I   A +ASV LA+E+GA
Sbjct: 388 PFESAMAKSWNMRIFRTIRQKADAASVALAEEKGA 422


>gi|329766042|ref|ZP_08257603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137497|gb|EGG41772.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 882

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 159/608 (26%), Positives = 289/608 (47%), Gaps = 55/608 (9%)

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            S+ +M  +F   + +  A K      +  E+++L+++  F+ ++PT+ N+G R  QLS+
Sbjct: 222 ASKGQMKVSFKDLLTLIAAKKFDSYADKITEYFDLMTAQDFLPNSPTMMNAGGRLGQLSA 281

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+  +PDD+  I  +  + A++ K  GG+G +++ +R  G  +  T+G + G + F+ +
Sbjct: 282 CFVLGMPDDMEKIMKSTSDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNI 341

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N     V QGGKR+GA    +E WH DVE+F+  +   G       + N +  I + F 
Sbjct: 342 INTVTEVVKQGGKRRGANMGIIEAWHPDVEKFITNKTEPG----VLENFNVSVGIWEDFW 397

Query: 491 KRV--TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +  T++  + L SP                         DR  +K   +I+A  L   
Sbjct: 398 NALVNTEDGKYMLRSP------------------------RDRKPVK---EINAHQLIDL 430

Query: 549 MLTMLFETGHPWITFKDPCNIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           +    +++  P + F D  N  +   +     + ++N C E +L         CNLGSIN
Sbjct: 431 IALSAWKSAEPGLIFFDQINKYNVFAKARQAPLRATNPCGEQSLYPYES----CNLGSIN 486

Query: 607 LLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L+           +FD+ +   TIR   R LDN+ID+N + +++   ++   R IGLG+M
Sbjct: 487 LVNLVKRQADGEYEFDWQRYEETIRKTTRFLDNIIDVNHYPVKEIDIASKDSRRIGLGVM 546

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L+ L IPY S E  E+  +  E ++++++  SV LA+ RG +     + + +G  
Sbjct: 547 GVADLLYKLKIPYNSKEGYELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKI 606

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PI   G   + ++           WD L +++K  G+RN     +APT T++ I   S  
Sbjct: 607 PI--AGYYEKPKESHCYE------WDALIEKIKKHGIRNVLTTTVAPTGTLSMIADCSNG 658

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           ++P++  ++ K    G F   N  +   LK+  L+ + +++ +  + GS+  I  IP  +
Sbjct: 659 MEPAFALVFEKRVTVGRFFYTNKIVEEVLKEHGLYSDELLAKIADNYGSLKGIPEIPQWM 718

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           + ++ TA +I     + +    Q WI    A+++N+  D  + + +   Y  A  +GLK 
Sbjct: 719 QDVYVTAMDIHWADHLMAQGVWQDWIGNAIAKTINMPYD-VTAEDVKSAYLLAHELGLKG 777

Query: 900 TYYLRSRS 907
               R  S
Sbjct: 778 ITVYRDGS 785



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN-K 88
           ++ KR+G VT+F+ +KIS AI KA  A      S++ RV  +  +L  + V +L++    
Sbjct: 12  EIRKRSGAVTAFNQNKISNAIFKALAAT-----SKADRV--LADHLANKVVQKLVEQGFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           ++    +EDIQD VE +L+ SG+  I + Y++YR ER  +R
Sbjct: 65  NSRAPSVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLR 105


>gi|189485391|ref|YP_001956332.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287350|dbj|BAG13871.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 767

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 180/634 (28%), Positives = 291/634 (45%), Gaps = 82/634 (12%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL------KETEKE 336
           +L  E     E   L +L  RY     +G+ IE P+  F RVA  +A       ++T+  
Sbjct: 8   ELISENKVNLENNALTVLKKRYLKKDKDGNVIESPEDLFYRVAENIAQADKIYDEDTDIT 67

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
               EFY  +SS  F+ ++PTL N+G    QLS+CF+  + D +  IF  L+  A++ K 
Sbjct: 68  ILIREFYLTMSSCDFLPNSPTLMNAGRHLQQLSACFVLPIDDSMDSIFETLKNTALIHKS 127

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG G  ++ +R     +  T+G S G I F++V N    A+ QGG R+GA    L   H
Sbjct: 128 GGGTGFSFSRLRPKKDVVRTTSGISSGPISFMQVFNAATEAIKQGGTRRGANMGMLRIDH 187

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +F+  +    D     ++ N +  I   FM  + +   + L++P            
Sbjct: 188 PDILDFIICK----DKDDSLNNFNISVAITKKFMDALEKGEYYNLYNP------------ 231

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                         R  + + R ++A  ++ K++   ++ G P I F D  N ++     
Sbjct: 232 --------------RNGVIIGR-LNANEVFGKIVDQAWKNGEPGIVFVDRMNHKNTTPSA 276

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           G + S+N C E  L         CNLGSINL     NN  +++KL  T++TAV  LDNVI
Sbjct: 277 GSIESTNPCGEQPLLPYES----CNLGSINLGHFVKNNDVNWEKLEKTVKTAVHFLDNVI 332

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D++ + I+K  +   ++R IGLG+MG+   L  L IPY S +++ +A+E M FI   +  
Sbjct: 333 DVSNYPIQKIGEVTRSNRKIGLGIMGWADLLLYLGIPYGSNDSLALAEELMGFIHSKSRK 392

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA +RG++ +FK S++ +G  P+                                 
Sbjct: 393 ASEELAFKRGSFPNFKKSIYAKGS-PV--------------------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRD 814
             RN+    IAPT TI  I   S  I+P +  +Y +     + +   VN +     K+  
Sbjct: 419 --RNATTTTIAPTGTIGMIASASSGIEPIFALVYKRMQCLDNEEMYEVNPYFEKLAKENG 476

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            +   +I  +    GSI   + IP+ +KKI  T+ +I P   I+  +  QK+ D A S  
Sbjct: 477 FYSPELIDKIS-EKGSIRGFKEIPEKIKKIFVTSHDIAPEEHIKMQAAFQKFTDNAVSKT 535

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           +     + K+ +  +Y  ++ MG K     R  S
Sbjct: 536 VNFPNSATKEDVKKVYILSYKMGCKGVTVYRDGS 569


>gi|325496275|gb|EGC94134.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
          Length = 714

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+  AVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+    ++   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|293415926|ref|ZP_06658566.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432115|gb|EFF05097.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 714

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 190/671 (28%), Positives = 307/671 (45%), Gaps = 74/671 (11%)

Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKET 333
           D V    D  +   F F+ +LG    Y  Y L   +G R    + F  RV M  L L + 
Sbjct: 83  DFVITLFDHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQG 140

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAM 392
           + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     
Sbjct: 141 D-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQ 199

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL
Sbjct: 200 LSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYL 259

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  
Sbjct: 260 HAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVER 316

Query: 513 LYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +
Sbjct: 317 VYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN 376

Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH      D  
Sbjct: 377 PI--AGRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLN-IAH----TMDSP 429

Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I Y SPE
Sbjct: 430 DFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPE 489

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLL 729
           A++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +          +
Sbjct: 490 ALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKV 549

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    +
Sbjct: 550 GELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKV 609

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K   +G       F+ NE       + A+  D                        A
Sbjct: 610 EIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------------A 638

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 639 YEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ 698

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 699 -MALEGTEIEG 708


>gi|218547808|ref|YP_002381599.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355349|emb|CAQ87956.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 714

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 194/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +K   A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDK-TLAKQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+  AVR L  V DI +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+    ++   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|49473849|ref|YP_031891.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           quintana str. Toulouse]
 gi|49239352|emb|CAF25685.1| Ribonucleotide reductase alpha-chain [Bartonella quintana str.
           Toulouse]
          Length = 716

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 191/676 (28%), Positives = 300/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + L E + DF  +       Y   F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKTLFE-LYDFSFIKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA      +  A  F + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 128 YEDRICLVALYLA---QGNKSLAESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 185 IEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDITFELAQN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFSP    D+  + GK F +I+  E+Y    D  +I+  +KI+A   ++ +  + 
Sbjct: 305 NEDMYLFSP---YDIERVTGKPFSDISLTEHYRSFVDNAKIRK-KKINARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601
           FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E               CN
Sbjct: 361 FESGYPYILFEDTANRANPI--AGRISMSNLCSEILQVSEASELETDLTYRTIGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +  F       T+  AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIAKAMESTNF-----GRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y S EA++  +     +++HAI AS  +A+ER   ++ F+ S +  G
Sbjct: 474 MNLHGFLAREQIYYGSLEAIDFTNIYFYTVAYHAIRASNLIARERQKVFAGFEKSAYADG 533

Query: 720 VFPIDSI-----GLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I          V++  A N      +  W ELKK V   G+ N N  A+ PT +
Sbjct: 534 SFFTKYIEKEWKPQCVLVQELFARNNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINHATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------NFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSIYYVRLR 699


>gi|26249070|ref|NP_755110.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|26109477|gb|AAN81680.1|AE016765_82 Ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli CFT073]
          Length = 714

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 193/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|257069612|ref|YP_003155867.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560430|gb|ACU86277.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
          Length = 710

 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 188/677 (27%), Positives = 307/677 (45%), Gaps = 82/677 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +   ++  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+GLA  
Sbjct: 77  DFSFIESLSEQAYAKKFRFPTFLGAFKYYTSYTLKTFDGERYLERFEDRVVMVALGLAQG 136

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +   E+ A    + +    F  +TPT  N+G  +  +L SCFL  + D++  I  ++   
Sbjct: 137 D---EQLARNLVDEILDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSA 193

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 194 LQLSKRGGGVALLLSNLREYGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 253

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   QN    LFSP    D+
Sbjct: 254 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKQNEPMYLFSP---YDV 310

Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
              YGK F      E Y    D   I   +KI A   ++ +  + FE+G+P+I F+D  N
Sbjct: 311 EREYGKPFADVNVSEVYREMVDNPNISK-KKIQARDFFQNLAEIQFESGYPYIMFEDTVN 369

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAHFANNQF 616
             +P    G V  SNLC+EI   S+     V            CNLGS+N+         
Sbjct: 370 RANPI--AGKVTHSNLCSEILQVSTPSSMNVDLTYDEMGRDISCNLGSLNIA-----KAM 422

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D    A +I TA+R L  V D  +  ++    + N    AIGLG M     L    + Y 
Sbjct: 423 DSPDFAQSIETAIRGLTAVSDTSDIESVPTIAEGNRKSHAIGLGQMNLHGYLARERVFYG 482

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S E ++  +     +++HAI AS+++A+ERG  +  F+ S +  G +    I  + E + 
Sbjct: 483 SEEGLDFTNMYFYSVTYHAIKASMKIAKERGEKFYDFENSKYATGEYFDKYIDQVWEPKT 542

Query: 735 E----LAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           E    L  +  + LP    W +L+  V   GM N+   A+ PT +I+ I   + SI P  
Sbjct: 543 EKVRGLFADSNAHLPTQEDWKQLRDEVAEHGMYNAYLQAVPPTGSISYINHSTSSIHP-- 600

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842
                              +V++++ R              +G IG +      + +D  
Sbjct: 601 -------------------IVSQIEIR-------------KEGKIGRVYYPAPYMTNDNL 628

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
           + +  A+EI    +I++ ++  + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 629 EYYEDAYEIGYEKIIDTYAQATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLY 688

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 689 YIRLRQ-MALEGTEVEG 704


>gi|293412033|ref|ZP_06654756.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468804|gb|EFF11295.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 714

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|293406172|ref|ZP_06650098.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298381909|ref|ZP_06991506.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|291426178|gb|EFE99210.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298277049|gb|EFI18565.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
          Length = 706

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 68  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 123

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 124 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 182

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 183 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 242

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 243 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 302

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 303 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 360 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 416

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 417 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 472

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 473 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 532

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 533 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 592

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 593 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 629

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 630 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 681

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 682 TLYYIRLRQ-MALEGTEIEG 700


>gi|300898655|ref|ZP_07116976.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300357683|gb|EFJ73553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
          Length = 701

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 298 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 354

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695


>gi|194439439|ref|ZP_03071515.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|194421615|gb|EDX37626.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 313/680 (46%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K + +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKESKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|332753392|gb|EGJ83772.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|333000677|gb|EGK20254.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 194/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  SP    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRASPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    + T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|294155963|ref|YP_003560347.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
 gi|291600345|gb|ADE19841.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
          Length = 718

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 166/595 (27%), Positives = 275/595 (46%), Gaps = 78/595 (13%)

Query: 346 LSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TPT  N+G +   +  SC+L  V D++  I   +  +  L+K  GG+    
Sbjct: 151 IMSGRYQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARGISTSLQLSKRGGGVALCL 210

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R LGA I     ++ G++P +K+  D+    NQ G+R+GA   YL   H DV  FLD
Sbjct: 211 TNLRELGAPIKNIQNQATGIVPVMKILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLD 270

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521
            ++   D++ R   ++    +PD+  +    N    LFSP    D+   YGK F    I 
Sbjct: 271 TKRENADEKIRIKSLSLGLVLPDITFELAKNNEDMALFSP---YDVQREYGKAFSDISIT 327

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y    ++   K F  ISA  L++ +  + FE+G+P++ F D  N RS   H G +  
Sbjct: 328 KEYYNMLNNKNIKKTF--ISARKLFQTIAELHFESGYPYLLFDDTVNDRSA--HPGRIIM 383

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINL--LAHFANNQFDYDKLASTIRT 627
           SNLC+EI   SS              E   CNLGS+N+  L    N      K + +I  
Sbjct: 384 SNLCSEIAQPSSETTYNPDLSFVKLGEDIACNLGSMNIDKLMQAGN------KFSDSIYR 437

Query: 628 AVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+  L+++  + +       +  N  +RAIGLG M     L    I Y + EAVE  D  
Sbjct: 438 AIYALNHIATNSDLSAAPSIQNGNKRNRAIGLGAMNLHGFLSTNSIYYNTKEAVEFTDLF 497

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-------------PIDSIGLLAEV 732
               ++H+  AS +LA+E  G +++F+ + +  G +             P   I  +AE+
Sbjct: 498 FYTFAYHSFKASNKLAKEGFGKFANFENTKFATGEYFDKYTKAKDDEYKPKSQI--VAEL 555

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  ++  ++  W EL K ++  G+ NS+ MAIAPT +I+ + G + S+ P   ++ V+
Sbjct: 556 FKKFDVHIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVADVEVR 615

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V ++ ++E                             ++ K     A+E+ 
Sbjct: 616 KEGKLGRVYVPAYKISE-----------------------------ENKKYYQMGAYEVG 646

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           P+ +I+  +  QK IDQA SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 647 PLPIIDVVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFKQKCASIYYVRIR 701


>gi|204929412|ref|ZP_03220486.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321131|gb|EDZ06331.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 305/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +RG GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LRGAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LAMEGTEIEG 708


>gi|323495951|ref|ZP_08101017.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
 gi|323318986|gb|EGA71931.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
          Length = 693

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 183/671 (27%), Positives = 306/671 (45%), Gaps = 70/671 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332
           D + + L  D  Y+  F F  +LG    +  Y L     +  + + F  RV M  L L  
Sbjct: 60  DREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALTLAR 118

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
            +K   A++    + S  F  +TPT  NSG +   +L SCFL  + D++  I  A+  + 
Sbjct: 119 GDK-AFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L++  GG+    + +R  GA I G   +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+ +FLD ++   D++ R   ++    IPD+ ++   QN    LFSP +V  ++
Sbjct: 238 LNAHHPDIMQFLDTKRENADEKIRIKTLSLGIVIPDITLELAKQNKDMYLFSPHDVERVY 297

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  ++ E Y    D   I+   KISA  L++ +  + FE+G+P++ F+D  N  +
Sbjct: 298 GVPFSEISVS-EKYHEMVDDPRIRK-SKISARGLFQTLAEIQFESGYPYLMFEDTVNAAN 355

Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G ++ SNLC+EI  +N +S                CNLGS+N+         D+ 
Sbjct: 356 PIK--GRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNLGSVNIAKALDGGHLDH- 412

Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               T+  ++R L+ V +++   ++   ++ N    AIGLG M     L    I Y S E
Sbjct: 413 ----TVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQMNLHGFLAREQIHYDSEE 468

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLL 729
           AV+          +H ++AS +LA ER   +  F+ S +  G F    +         ++
Sbjct: 469 AVDFTRTYFATTLYHCLTASNKLALERKQVFVGFEHSQYATGEFFTKYLQQDYSPRTDIV 528

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           A + + L M   S   W +L+ +V   G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 529 AALFERLDMRVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSISYINDATASIHPVTAKV 588

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K    G       +L N+                       N++   D        A
Sbjct: 589 EIRKEGKIGRVYFPAPYLSND-----------------------NLDYFKD--------A 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI P  +I+  +   + +DQ  SL L+  DE + + ++     AW   +KT YY+R R 
Sbjct: 618 YEIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQIYAWKKKIKTLYYIRMRQ 677

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 678 -KALEGTQVEG 687


>gi|295397109|ref|ZP_06807220.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294974651|gb|EFG50367.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 732

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 188/696 (27%), Positives = 306/696 (43%), Gaps = 93/696 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317
           YIEEG   +        F+ +    D  Y   F F+ ++G    Y +Y L  N ++    
Sbjct: 72  YIEEGFLNKY------SFNFIQSLFDHLYSHKFRFKSFMGAYKFYTQYALKTNDNK-RFL 124

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV 376
           + +  R+A          E  A              +TPT  N+G  R  ++ SCFL  V
Sbjct: 125 ERYEDRIAFTALYLADGDEDLAWHIAEEHIEHRLQMATPTFLNAGKKRRGEMVSCFLIDV 184

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  A+  +  L+K  GG+G + + +R  GA I G      GV+P +K+  D   
Sbjct: 185 QDNMESIGRAVNSSLQLSKRGGGVGVNLSNLREAGAAIKGIENAGSGVVPVMKLLEDAFS 244

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R GA   YL  +H DV EFL  +K   D++ R   ++    +PD + + +  N
Sbjct: 245 YANQLGQRNGAGVVYLNAFHPDVYEFLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTN 304

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               LFSP    D+  +YG+ F      E+YE      EIK + KI+A  L +++  +  
Sbjct: 305 EPMYLFSP---YDVERIYGEPFGYVDITEHYEDMVANKEIKKY-KINARELEQEISRLQQ 360

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNL 602
           E+G+P+I   D  N  +P    G +  SNLC+EI       TLN       V     CNL
Sbjct: 361 ESGYPYIMNVDTANKENPIN--GTITMSNLCSEIMQVQKPSTLNEDLTYKEVGLDISCNL 418

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
            S N+      N F+       + TAVR L  V D+ +   +   ++ N  + +IGLG M
Sbjct: 419 ASTNITEMLKTNDFE-----KAVDTAVRALTAVSDMTSIQAVPSVERGNSAYNSIGLGAM 473

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +AL    I Y S EA+E+ D     + ++A+  S ++A+ERG ++  F  S +  G 
Sbjct: 474 GLHTALATNQIHYGSAEALELTDAYFMALRYYALKTSNQIAKERGESFFEFDQSAYADGS 533

Query: 721 FPIDSIGLLAEVRDELAMNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTA 770
           + I    +  +V       + ++L           W  L + +   G+ N+  + +APT 
Sbjct: 534 Y-IRERYIDNQVPFVFHSEKVAKLFDHIHIPTPDDWAALNQAIMADGLYNAYLLTVAPTG 592

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   S SI P                     +V+ ++ R    E  I  + Y    
Sbjct: 593 SISYINEASSSIHP---------------------IVHLIENR---QETNIGSMFYPAPY 628

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877
           + N      D  + + +A+E D   +I++ +  QK IDQ  SL L++             
Sbjct: 629 LDN------DTIQYYKSAYETDMRQVIDTYATAQKHIDQGMSLTLFMQSTIPRGLYEWKN 682

Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              D+ + + L+ +   AW  G+K+ YY+R+ +  S
Sbjct: 683 GNTDKMTTRDLNRLRNYAWAKGIKSIYYVRTYTDDS 718


>gi|157162126|ref|YP_001459444.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|188494464|ref|ZP_03001734.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|253772464|ref|YP_003035295.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037717|ref|ZP_04871775.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|254162612|ref|YP_003045720.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|301026691|ref|ZP_07190102.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|331643363|ref|ZP_08344494.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|157067806|gb|ABV07061.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|188489663|gb|EDU64766.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|226839341|gb|EEH71362.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|242378237|emb|CAQ33012.1| nrdE, subunit of ribonucleoside-diphosphate reductase 2, alpha
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323508|gb|ACT28110.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974513|gb|ACT40184.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978680|gb|ACT44350.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|299879613|gb|EFI87824.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|309703040|emb|CBJ02372.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli ETEC H10407]
 gi|315615062|gb|EFU95699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|331036834|gb|EGI09058.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332344557|gb|AEE57891.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|116511804|ref|YP_809020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107458|gb|ABJ72598.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 722

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 197/717 (27%), Positives = 321/717 (44%), Gaps = 85/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288
           +E +T  +K+  +   +E      +      EE ++A  L +   +F +  L  +L K+E
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
             F   ++     Y++Y +  N   + + + F  RV M         EK A      + +
Sbjct: 91  FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +
Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524
              D++ R   ++    +PD F + V +     LF P  V      YGK F   +I  E 
Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y++     EI+    I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNL
Sbjct: 325 YDKMVANPEIRK-TPINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        LN       V     CNLGS N+L    ++    D+  +++ + VR L
Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRAL 437

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++
Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL--AMNRTSR 743
           ++ + AS +LA E+GA + +F+ S +  G +       D    ++    EL   +   + 
Sbjct: 498 YYTLVASNKLAVEKGASFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTI 557

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+  VKT G+ NS  MA+AP  +I+ I   S SI P                   
Sbjct: 558 ADWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP------------------- 598

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +VN +++R    E  +  + Y    +   E IP      + +A++ D   +I+  +  
Sbjct: 599 --IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRSVIDVYAAA 647

Query: 864 QKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++    P G             + L  +   A+  G+KT YY+R+
Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|323188443|gb|EFZ73729.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADEHIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|323971480|gb|EGB66715.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 701

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 304/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K + +G     
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGRVYYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|300957446|ref|ZP_07169659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300315802|gb|EFJ65586.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
          Length = 701

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHTSGFCFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 298 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 354

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 412 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 468 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 528 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695


>gi|16130589|ref|NP_417161.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89109468|ref|AP_003248.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|170082261|ref|YP_001731581.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901819|ref|YP_002927615.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|2507305|sp|P39452|RIR3_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85675520|dbj|BAA16539.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|169890096|gb|ACB03803.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238863479|gb|ACR65477.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|315137288|dbj|BAJ44447.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 388

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 389 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 443

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 503

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 563

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|218706175|ref|YP_002413694.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|218433272|emb|CAR14172.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli UMN026]
          Length = 714

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|324005771|gb|EGB74990.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
          Length = 701

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|260869354|ref|YP_003235756.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765710|dbj|BAI37205.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180096|gb|EFZ65648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
          Length = 714

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L+SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELASCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|222102711|ref|YP_002539750.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
 gi|221739312|gb|ACM40045.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
          Length = 693

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 186/658 (28%), Positives = 300/658 (45%), Gaps = 69/658 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA   
Sbjct: 61  FNFVRDLFDHAYVKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLA--- 117

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  + D++  I   +    
Sbjct: 118 QGNEALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIARGINSAL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 238 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 297

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 298 GVAFSEISVTEKYREMVADSRIRK--KKIKARDFFQVLAEIQFESGYPYIMFEDTVNRAN 355

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI       T N       +     CNLGS+N+ A   ++ F   
Sbjct: 356 PI--AGRISMSNLCSEILQVSDVSTYNDDLSYKTMGKDISCNLGSLNIAAVMDSSDF--- 410

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI TA+R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 411 --GRTIETAIRALTAVSDMSHISSVPSIEKGNDDSHAIGLGQMNLHGYLARERIFYGSEE 468

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLL 729
            ++  +     +++HAI AS  +A ERG ++  F+ S +  G +         + +   +
Sbjct: 469 GIDFTNMYFYTVTYHAIRASNRIAAERGTSFKGFENSKYASGEYFDKYTQTEWLPATRRV 528

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           AE+ +   ++  ++  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P     
Sbjct: 529 AELFETAGISIPTQEDWLALKEVVMASGLYNQNLQAVPPTGSISYINHSTSSIHP----- 583

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           +V++++ R    E  I  + Y    + N     D+L   +  A+
Sbjct: 584 ----------------IVSKIEIRK---EGKIGRVYYPAAFMSN-----DNLD-YYQDAY 618

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 619 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 676


>gi|311741197|ref|ZP_07715021.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303367|gb|EFQ79446.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 720

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 182/675 (26%), Positives = 308/675 (45%), Gaps = 77/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DF  +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M       
Sbjct: 86  DFSFIKELFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
                A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     
Sbjct: 145 GDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    +PD+  +   +N    LFSP    D+  
Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVER 321

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618
           +P +    ++ SNLC+EI  +NS+SE  A            CNLGS+N+         D 
Sbjct: 381 NPVK-TSWINMSNLCSEILQVNSASEFNADLTYEELGSDISCNLGSLNIAM-----TMDS 434

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A+T+ TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S 
Sbjct: 435 PDFANTVETAIRGLTAVADKTSIDSVPSVRRGNDESHAIGLGQMNLHGYLGREHIEYGSE 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728
           E ++  +     + + A+ AS ++A+ERG Y + F  S +  G F     P +       
Sbjct: 495 EGLDFTNAYFAAVLYAALRASNKIARERGEYFTEFPQSEYASGEFFDRYDPEEFKPKTKK 554

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D  +++  S   W++LK+ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 555 VQELFDASSIHTPSAQDWEDLKQEVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844
           + ++                                   +G IG +      + +D  + 
Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 640

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              ++EI    ++++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 641 FKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYI 700

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 701 RLRQ-MALEGTEVEG 714


>gi|300941042|ref|ZP_07155561.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300454206|gb|EFK17699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
          Length = 701

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|269794348|ref|YP_003313803.1| ribonucleoside-diphosphate reductase class Ib subunit alpha
           [Sanguibacter keddieii DSM 10542]
 gi|269096533|gb|ACZ20969.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 693

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/666 (28%), Positives = 302/666 (45%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340
           DL Y + F FE +LG    Y  Y L   +G R    + F  RV M  L L + + E  AV
Sbjct: 69  DLAYSKKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-ETTAV 125

Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
                + +  F  +TPT  NSG  +  +  SCFL  + D++  I   +     L+K  GG
Sbjct: 126 NVVEEIIAGRFQPATPTFLNSGKAQRGEAVSCFLLRIEDNMESIARGINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F 
Sbjct: 246 MRFLDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDMYLFSP---YDVERVYGKPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           ++A  E Y    D G I+   KI A   ++ +  + FE+G+P++ F+D  N  +P +  G
Sbjct: 303 DVAISEKYHEMVDDGRIRK-TKIKAREFFQTLAELQFESGYPYVMFEDTVNAANPIK--G 359

Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624
            +  SNLC+EI L  S+  T               CNLGS+N+         D    A T
Sbjct: 360 RITHSNLCSEI-LQVSTPSTYNDDLSYEHIGRDISCNLGSMNIA-----KAMDSPDFAKT 413

Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           I TA+R L  V D  +  ++   +++N +  AIGLG M     L    + Y S E ++  
Sbjct: 414 IDTAIRALTAVSDQTSIDSVPSIRRANESGHAIGLGQMNLHGYLARERVFYGSEEGIDFT 473

Query: 684 DESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF---PIDSI-----GLLAEVRD 734
           +     ++FHAI+AS  LA ER  +   F+ S +  G +     D +       + ++  
Sbjct: 474 NIYFYTVAFHAIAASNRLAIERKRFFGGFEDSKYATGEYFDKYTDQVWEPATDRVRQIFA 533

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KS 793
           +  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + + K 
Sbjct: 534 DAGVHIPTQQDWAELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKE 593

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       +L N+                       N+E   D        A+EI  
Sbjct: 594 GKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGY 622

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 623 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-LALE 681

Query: 913 KSTLKG 918
            + ++G
Sbjct: 682 GTEVEG 687


>gi|261342123|ref|ZP_05969981.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315454|gb|EFC54392.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 693

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 196/690 (28%), Positives = 319/690 (46%), Gaps = 82/690 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315
           Y EE V AR   ++++         +  + R F F+ +LG    Y  Y L   +G R +E
Sbjct: 50  YYEERVLARYGRDAIVKL------FEHAHARGFRFQTFLGAWKYYTSYTLKTFDGKRYLE 103

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT 374
             +   + VA+ LA  +   E  AV+  + + S  F  +TPT  N+G  +  +L SCFL 
Sbjct: 104 TFEDRVVMVALTLAQGD---EALAVQLTDEILSGRFQPATPTFLNAGKAQRGELVSCFLL 160

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D 
Sbjct: 161 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 220

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I D+  +   
Sbjct: 221 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVITDITFQLAK 280

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +NA   LFSP    D+  LYGK F ++A  E Y+       I+  + I+A   ++ +  +
Sbjct: 281 ENADMALFSP---YDIERLYGKAFGDVAISERYDELVADDRIRK-KYINARDFFQTLAEI 336

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVC 600
            FE+G+P+I ++D  N  +P    G ++ SNLC+EI  +N++S            +   C
Sbjct: 337 QFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNAASTYDENLDYADVGKDISC 394

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+ AH      D      T+ TAVR L  V D+ +  ++   +  N    AIGLG
Sbjct: 395 NLGSLNI-AH----TMDSPDFGRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLG 449

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718
            M     L    I Y SPE ++  +     I++HA+  S+ LA+ERG  ++ F+ S +  
Sbjct: 450 QMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMMLARERGQRFAGFEQSRYAS 509

Query: 719 GVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G +       D      +VR   A   +   +R  W +L+  V   G+ N N  A+ P+ 
Sbjct: 510 GEYFNQYLENDWQPKTEKVRQLFARAGVTLPTRAMWQQLRDEVMQHGIYNQNLQAVPPSG 569

Query: 771 TIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + + K   +G       F+ NE       + A+  D      
Sbjct: 570 SISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------ 616

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                             A+EI P  +I++ +   K +DQ  SL L+  D  + + ++  
Sbjct: 617 ------------------AYEIGPEKIIDTYAEATKHVDQGLSLTLFFPDTATTRDINRA 658

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 659 QIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 687


>gi|332999412|gb|EGK18997.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
          Length = 714

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    + T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|91212036|ref|YP_542022.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|215487996|ref|YP_002330427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218559667|ref|YP_002392580.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|237706703|ref|ZP_04537184.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|312965590|ref|ZP_07779820.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|91073610|gb|ABE08491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli UTI89]
 gi|215266068|emb|CAS10488.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218366436|emb|CAR04188.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli S88]
 gi|226899743|gb|EEH86002.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|294491935|gb|ADE90691.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|307625753|gb|ADN70057.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
 gi|312289739|gb|EFR17629.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|323951103|gb|EGB46979.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957112|gb|EGB52837.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 714

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|124485031|ref|YP_001029647.1| hypothetical protein Mlab_0204 [Methanocorpusculum labreanum Z]
 gi|124362572|gb|ABN06380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanocorpusculum labreanum Z]
          Length = 736

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 165/612 (26%), Positives = 282/612 (46%), Gaps = 98/612 (16%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL ET +E +  E+++ + S  F+ ++PTL N+GT   QLS+CF   V D L  IF A++
Sbjct: 32  ALGETPEETK--EYFDAMMSLSFLPNSPTLMNAGTPLGQLSACFTLPVNDSLPEIFDAIR 89

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             A++ +  GG G +++ +R  G+ +  T+G + G + F++V N     + QGG+R+GA 
Sbjct: 90  WGAIIHQSGGGTGYNFSHLRPEGSPVRSTDGVASGPVSFMRVFNAATDVIKQGGRRRGAN 149

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              L  WH D+ +F+  +   GD      + N +  + D FM  V +             
Sbjct: 150 MGILNVWHPDIMKFIKSKAKEGD----FSNFNISVMVSDAFMDLVAK------------- 192

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                 G++ ++   N +             I+   +W  ++  +++ G P I F D  N
Sbjct: 193 ------GEKDKVWVTNTDGVG----------ITVGEIWEGIIEGVWKNGEPGILFYDTIN 236

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            ++P  ++G + ++N C E  L         C LGSINL      +  +Y+ L    R  
Sbjct: 237 RKNPTPNLGEIDTTNPCGEQPLLPFES----CVLGSINLAKFIRADGLNYEALDKMTRMG 292

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R LD VI  N   I + + + +  R +GLGLMG   A+ +L IPY S        E ME
Sbjct: 293 IRFLDAVITKNVFPIPEIRDATNRTRKVGLGLMGVHDAMLMLRIPYDSEAGRNFCIEVME 352

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            I+  A+  SV L +E+G + +++GS+WD QG+                           
Sbjct: 353 RINNVAVEESVILGKEKGTFPAYEGSVWDKQGII-------------------------- 386

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFL 806
                     MRN+    IAPT TI+ + G S  I+P +   Y + N  G  F +V+ + 
Sbjct: 387 ----------MRNAALTTIAPTGTISLLAGCSSGIEPVFSFAYTRRNTVGKTFVMVHPYF 436

Query: 807 VNELKQ-------RDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFEIDPMW- 855
            +EL++            EA   ++  H    GS+ +I  +PD  K +  TA +I   W 
Sbjct: 437 ESELRRVITAMGLTGAEAEAKRDEVINHVHETGSVQDIAWLPDTFKAVFKTALDIG--WK 494

Query: 856 ---LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRS--A 908
              L+++A ++      ++++N+ +   + + ++     AW  G+K  T Y   SR    
Sbjct: 495 DHVLMQAAFQKHVHASISKTINMPVTA-TKEDVEKAVILAWREGIKGMTLYRTGSREDVV 553

Query: 909 TSVEKSTLKGVD 920
            ++EK  +K V+
Sbjct: 554 LALEKQEIKPVE 565


>gi|331658786|ref|ZP_08359728.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331053368|gb|EGI25397.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
          Length = 714

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|331669413|ref|ZP_08370259.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332280667|ref|ZP_08393080.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|331063081|gb|EGI34994.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332103019|gb|EGJ06365.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 714

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 388

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 389 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 443

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 503

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 563

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|218701170|ref|YP_002408799.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218371156|emb|CAR18987.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI39]
          Length = 714

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFHDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|117624911|ref|YP_853851.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|115514035|gb|ABJ02110.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli APEC O1]
 gi|315284935|gb|EFU44380.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
          Length = 701

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|314121809|ref|YP_004063928.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
 gi|313151566|gb|ADR32622.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
          Length = 751

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 207/792 (26%), Positives = 337/792 (42%), Gaps = 82/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK-NMYDGLSESDLETALI 203
           +++    G    F+ +++  ++  +C G         L ET K ++ DG++  D++T +I
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN--IDPYELYETIKPHLRDGMTTRDIQTVII 58

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             S  LI  +EP+Y  V A+  +  LR++V      +P+        C         + E
Sbjct: 59  KVSAGLISVEEPDYQYVAAKATMFALRKDVYGQF--EPRSFIDQISYC---------VNE 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L  S    ++ YL + +K+ERDF   Y G   L ++Y +     G   E PQ  
Sbjct: 108 GKYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFA 167

Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            M + M L   E T++ K    FY+ +S+      TP +  + T   Q SSC +    D 
Sbjct: 168 IMAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADS 227

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R  G+ I     K  GVIPF K       + +
Sbjct: 228 LKSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCS 287

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   
Sbjct: 288 QGGIRGGAATAYYPLWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYI 347

Query: 500 TLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           TLFSP E   +L+  Y    +   E YE       ++  ++I A  L+   +T    T  
Sbjct: 348 TLFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDLFELFMTERSGTAR 406

Query: 559 PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFA 612
            +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +      F 
Sbjct: 407 VYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSA------FV 460

Query: 613 NNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
            + FD+   DK+       VR LDN++D   + +++A K+    R +G+G+  + + L  
Sbjct: 461 LDSFDWQDQDKINELAEVQVRALDNLLDYQGYPVKEALKAKK-RRNLGVGVTNYAAWLAS 519

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               YA  +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID     
Sbjct: 520 NFASYA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPID---WY 574

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +  D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    +
Sbjct: 575 NKKIDQIAAPNYV-CDWAQLREDLVAYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 633

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K +  G F   N  + N    + L+D A +   K      GN         K + T  
Sbjct: 634 SIKESKEGSF---NQVVPNIEHNKGLYDYAWVLAKK------GN---------KPYLTMV 675

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTT 900
            I             KW+ Q+ S N Y D    P GK        D +Y   W  G K  
Sbjct: 676 AI-----------MLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLMY--FWYFGGKNL 722

Query: 901 YYLRSRSATSVE 912
           YY  +R  +  +
Sbjct: 723 YYHNTRDGSGTD 734


>gi|170019073|ref|YP_001724027.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|256024813|ref|ZP_05438678.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|300949071|ref|ZP_07163118.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301645346|ref|ZP_07245293.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307139367|ref|ZP_07498723.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|169754001|gb|ACA76700.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|300451457|gb|EFK15077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301076380|gb|EFK91186.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|323935631|gb|EGB31948.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941489|gb|EGB37672.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323960579|gb|EGB56206.1| ribonucleotide reductase [Escherichia coli H489]
          Length = 701

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|229818598|ref|YP_002880124.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564511|gb|ACQ78362.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 701

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 191/656 (29%), Positives = 305/656 (46%), Gaps = 81/656 (12%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D+ Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +   E+ A+
Sbjct: 77  DVAYAKKFRFTTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLADGD---EQLAL 133

Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  + + S  F  +TPT  N+G  +  +L SCFL  + D++  I   +     L+K  GG
Sbjct: 134 ELVDEVISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGG 193

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 194 VALLLSNIREYGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 254 LRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFS 310

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           EI+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G
Sbjct: 311 EISVTEKYYEMLDDARIRK-TKIKAREFFQLLAEIQFESGYPYIVFEDTVNRANPIK--G 367

Query: 578 VVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI    T +S +++ +         CNLGS+N+ AH      D   L  T+
Sbjct: 368 RITMSNLCSEILQVSTASSFNDDLSYADTGKDISCNLGSLNI-AH----AMDSPDLGKTV 422

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   +K N+   AIGLG M     L    I Y S E V+  +
Sbjct: 423 GVAIRSLTAVSDQTHIWSVPSVEKGNNDSHAIGLGQMNLHGYLARERIHYGSAEGVDFTN 482

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA----- 737
                + +HAI+AS ++A ERG A++ F  S +  G  F   + G+     D +A     
Sbjct: 483 IYFYTVLYHAIAASNQIAIERGSAFAGFSESQYASGEFFDKYTDGVWEPATDRVAQLFAD 542

Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++  ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 543 AEVHIPTQSDWQALKASVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 591

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V  ++ R              +G IG +      + DD  + +A A+EI
Sbjct: 592 ----------IVAPIEIRK-------------EGKIGRVYYPAPYLSDDNLEYYADAYEI 628

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 629 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLR 684


>gi|307314436|ref|ZP_07594041.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|306906004|gb|EFN36525.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|323377463|gb|ADX49731.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
          Length = 714

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F   TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPNFARTVETAVRGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|333001012|gb|EGK20582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333015484|gb|EGK34823.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 714

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    + T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|260448267|gb|ACX38689.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
          Length = 701

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|256019543|ref|ZP_05433408.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 701

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 303/657 (46%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|227504015|ref|ZP_03934064.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199409|gb|EEI79457.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 720

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 189/671 (28%), Positives = 305/671 (45%), Gaps = 69/671 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DFD +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M       
Sbjct: 86  DFDFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
                A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     
Sbjct: 145 GDTTVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  
Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDVER 321

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 322 VYGKAFADISITEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNKA 380

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-------EETA----VCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS S        ET      CNLGS+N+         D 
Sbjct: 381 NPVK-TGWINMSNLCSEILQVNSPSVFADDLSYETMGSDISCNLGSLNIAM-----TMDS 434

Query: 619 DKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                T+ TA+R L  V D    +++   +K N    AIGLG M     L   HI Y S 
Sbjct: 435 PDFGLTVETAIRGLTAVADKTAINSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGSE 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728
           E ++  +     I + A+ AS ++A+ERG Y S F  S +  G F     P +       
Sbjct: 495 EGLDFTNAYFAAIMYAALRASNKIARERGEYFSEFPQSEYASGEFFDRYDPEEFKPRTAR 554

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D  +++  +   W  LK  V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 555 VQELFDASSIHTPTAEDWAALKADVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y    + N     D+L+     +
Sbjct: 615 IEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFK-DS 644

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 645 YEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ 704

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 705 -MALEGTEIEG 714


>gi|9629309|ref|NP_044509.1| ribonucleotide reductase subunit 1 [Human herpesvirus 2]
 gi|82013519|sp|P89462|RIR1_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP10; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|1869862|emb|CAB06725.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1142

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 189/663 (28%), Positives = 301/663 (45%), Gaps = 84/663 (12%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 498  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 557

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I G +  +A+LA+ 
Sbjct: 558  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNV--SAILAR- 614

Query: 397  SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
            +GG+G      ND +P              +  ++P LKV +    A N+   R    C 
Sbjct: 615  NGGIGLCMQAFNDASP-------------GTASIMPALKVLDSLVAAHNKQSTRPTGACV 661

Query: 451  YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503
            YLE WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  W+LF 
Sbjct: 662  YLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFD 721

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             D    L D +G+EFE  YE+ E     GE    + + A A+ R   T    TG P+I F
Sbjct: 722  RDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDL-AYAIVRSAAT----TGSPFIMF 775

Query: 564  KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            KD  N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L 
Sbjct: 776  KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 835

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  V +++ +ID       +  + N   R++G+G+ G  +A   + +   S E  ++
Sbjct: 836  DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLESAEFRDL 895

Query: 683  ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                 E +   A+  S  L   RGA  +S FK S++  G F  +              N 
Sbjct: 896  NTHIAEVMLLAAMKTSNALCV-RGARPFSHFKRSMYRAGRFHWERFS-----------NA 943

Query: 741  TSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            + R    W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+
Sbjct: 944  SPRYEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGE 1003

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853
                N+ L+ EL +R    + ++  +   +    ++ +    L   H      TAF+ D 
Sbjct: 1004 TLRPNTLLLKEL-ERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1062

Query: 854  MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907
              LI+  + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R 
Sbjct: 1063 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1122

Query: 908  ATS 910
            AT+
Sbjct: 1123 ATN 1125


>gi|320640664|gb|EFX10200.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
          Length = 714

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 312/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPV--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TA R L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAGRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 G + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|323173042|gb|EFZ58673.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 714

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|331654158|ref|ZP_08355158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331047540|gb|EGI19617.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 714

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 302/657 (45%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 330

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 331 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLC 388

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 389 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 443

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 444 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 503

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 504 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 563

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 564 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 624 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 652

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 653 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|308273142|emb|CBX29745.1| hypothetical protein N47_F14400 [uncultured Desulfobacterium sp.]
          Length = 734

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 288/621 (46%), Gaps = 79/621 (12%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350
           L +L  RY      G  IE P+  F+RVA  +A  ++      + EK   +F  LL++  
Sbjct: 18  LIVLEKRYLKKDKEGKAIETPEDMFLRVAKHIASADSLFAGPFDIEKTEKKFLKLLTNLW 77

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G R  QL++CF+  + D +  IF  L+  AM+ K  GG G  ++ +R  
Sbjct: 78  FLPNSPTLMNAGRRLGQLAACFVLPLEDSMDSIFETLKHTAMIHKSGGGTGFSFSRIRPE 137

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +  T G S G I F+ V +     V QGG R+GA    L   H D+E F++L+ +TG
Sbjct: 138 KDIVLSTAGVSSGPISFMTVFDVATETVKQGGTRRGANMGILRVDHPDIESFIELKNDTG 197

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               + ++ N +  + D FM  ++  +       D+ S+ +DL     E           
Sbjct: 198 ----KLNNFNISVALTDSFMDALSNES-------DKDSE-YDLINPRTE----------- 234

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               ++ R++SA  ++  ++   +  G P I F D  N  +P   +G + ++N C E  L
Sbjct: 235 ----QITRRVSARKIFDAIVHSAWLNGEPGIIFIDRINRDNPVPELGNIEATNPCGEQPL 290

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    C LGSINL A  +    +Y +L  TI  +V  LDNV++IN + + + +K +
Sbjct: 291 LPYES----CTLGSINLSAMVSGKAVNYKRLKKTIHDSVHFLDNVVEINKYPLARIEKMS 346

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+MGF   L  L I Y S EAV  A++ M FIS  +  AS  LA++RG ++ 
Sbjct: 347 KGTRKIGLGVMGFADMLIKLGISYDSEEAVTQAEKIMSFISEESKIASAALAKKRGNFAF 406

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +KGS++D    P                                   MRN+    IAPT 
Sbjct: 407 YKGSIYDSPDTPY----------------------------------MRNATTTTIAPTG 432

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I G S  I+P +  +  +  + G   + +N   +   K    + + ++ ++  +  
Sbjct: 433 TISIIAGTSSGIEPIFGIVQTRRVLDGKTLSDINPLFIGIAKSEGFYSKNLLDEIT-NGT 491

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-- 887
           SI  I+ IPD +K +  TA +I P   I   +  Q++ D A S  +    P   + D   
Sbjct: 492 SIQQIDAIPDQIKDLFKTAHDILPEQHINIQAAFQRFTDNAVSKTVNFG-PDALRSDIAK 550

Query: 888 IYRQAWLMGLK--TTYYLRSR 906
           +Y  A   G K  T Y   SR
Sbjct: 551 VYMLAHTKGCKGVTIYRYGSR 571


>gi|315061956|gb|ADT76283.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli W]
          Length = 701

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 187/657 (28%), Positives = 302/657 (45%), Gaps = 74/657 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F   TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 TVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVV 802
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G     
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F+ NE       + A+  D                        A+EI    +I++ + 
Sbjct: 611 APFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYAE 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 640 ATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|165976418|ref|YP_001652011.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876519|gb|ABY69567.1| ribonucleoside-diphosphate reductase, alpha chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 756

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y        
Sbjct: 65  AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            KA L   +  ++ L  +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPII--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+ D +   ++FE  Y  YE+     +    R + AV L+  ++
Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL      N  +++ LA  +   VR LD ++D   + ++ AK +    R++G+G++
Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS       + EL    T  L   W+ L+  +K  G+RNS   ++ P+ T + I   +
Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K++  G    VV  +     +   LWD   I D+  +   +G +    
Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891
                                    QK+IDQA S N   D       +   K+L      
Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720

Query: 892 AWLMGLKTTYYLRSR 906
           A+  GLKT YY  +R
Sbjct: 721 AYKYGLKTLYYQNTR 735


>gi|32453720|ref|NP_861929.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage RB69]
 gi|32350539|gb|AAP76138.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           RB69]
          Length = 751

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 204/804 (25%), Positives = 346/804 (43%), Gaps = 96/804 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI- 203
           +++    G   +F+++++  ++   C G Q +    +  E   ++ DG+S  D++   I 
Sbjct: 1   MQVTKSSGVSQNFDAQKIIQVLTWQCEGTQ-IDPYELYEEIKTHLVDGMSTKDIQKICIK 59

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258
            ++ ++  +EP+Y  V A+ L+  LR++V      +P     H   C+      PE   R
Sbjct: 60  VAANSISVEEPDYQYVAAKGLMFALRKDVYGQF--EPPAFIDHISYCVNEGKYDPELLSR 117

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           Y  E              +++YL + +K+ERDF   Y G   L ++Y +     G   E 
Sbjct: 118 YSAE--------------EIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYET 163

Query: 317 PQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           PQ   M + M L   ET ++ K  + FY+ +S+      TP +  + T   Q SSC +  
Sbjct: 164 PQFAIMAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSSCVVIE 223

Query: 376 VPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             D L  I    + +A + +Y     G+G +   +R  G+ I     +  GVIPF K   
Sbjct: 224 AGDSLKSIN---KTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKHFQ 280

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               + +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    I DL M+R
Sbjct: 281 TAVKSCSQGGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMMER 340

Query: 493 VTQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           + +N   TLFSP E+S +L+  + ++ +   E YE+      I+  ++I A+ L+   +T
Sbjct: 341 LGKNDYITLFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRK-KRIKALELFELFMT 399

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSI 605
               T   +  F D  N  +P  +    +  SNLC EI +     N    E  +C L + 
Sbjct: 400 ERSGTARIYPQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGLCTLSA- 458

Query: 606 NLLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                F  ++FD+   DK+       VR LDN++D   + + +A K+    R +G+G+  
Sbjct: 459 -----FVLDKFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAK-KRRNLGVGVTN 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           + + L      Y   +A  +  E  E + +  I AS++LA+E+G    +  + W +G  P
Sbjct: 513 YAAWLASNFASYE--DANYLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKWSRGELP 570

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID      +  D++A        W   +   K  G+RNS   A+ P  + + +   +  I
Sbjct: 571 ID---WYNKKIDQIAAPNYV-CDWKNFELNSKEHGIRNSTLSALMPCESSSQVSNSTNGI 626

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + +K +  G+F  V   + N      L+D A                ++     
Sbjct: 627 EPPRGPVSIKESKEGNFRQV---VPNIEHNMSLYDYAW---------------KLAKKGN 668

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL---------DFIYRQAW 893
           K + T   I             KW+ Q+ S N Y D    +K          D +Y   W
Sbjct: 669 KPYLTQVAI-----------MLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLY--FW 715

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
             G K  YY  +R  +  +   L+
Sbjct: 716 YFGGKNLYYHNTRDGSGTDDYELE 739


>gi|283457962|ref|YP_003362568.1| ribonucleotide reductase subunit alpha [Rothia mucilaginosa DY-18]
 gi|283133983|dbj|BAI64748.1| ribonucleotide reductase, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 726

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 185/671 (27%), Positives = 302/671 (45%), Gaps = 72/671 (10%)

Query: 276 FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
           ++  ++ N  K  Y   F F  +LG    Y  Y L   +G R    + F  RV M   L 
Sbjct: 94  YNFQFIKNLFKRAYAVKFRFPTFLGAFKFYTSYALKTFDGQR--YLERFEDRVCMVALLL 151

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
               EK A +  + + S  F  +TPT  N+G +   +L SCFL  + D++  I  ++   
Sbjct: 152 AEGNEKLAEDIVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIGRSINSA 211

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 212 LQLSKRGGGVAFALTNLRESGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 271

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  +
Sbjct: 272 YLHAHHPDIYAFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERI 331

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   +  ++ + YE   D    K   KI+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 332 YGVPFSDINVSEKYYEMVDDARITK--SKINAREFFQTIAEIQFESGYPYVMFEDTVNRA 389

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFD 617
           +P    G V  SNLC+EI L  S   T               CNLGS+N+         D
Sbjct: 390 NPI--AGKVIMSNLCSEI-LQVSEPSTYHADLGYETVGKDISCNLGSLNIAL-----TMD 441

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            D    T+ TA+R L +V D  +  ++   ++ N+   A+GLG M     L   H+ Y S
Sbjct: 442 GDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGNNMSHAVGLGQMNLHGYLAREHVYYGS 501

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-----GLLA 730
            EA++  +     +++HAI  S+++A+ERG  +  F+ S +  G F    I         
Sbjct: 502 EEALDFTNMYFYTVAYHAIRTSMQIAKERGQRFEGFENSKYASGEFFAKYIEKEWAPQTE 561

Query: 731 EVRDELAMNRT-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R+  A +   +R  W +L   V   GM N N  A+ PT +I+ I G + SI P    +
Sbjct: 562 RTRELFAKHHIPTREEWIQLAADVAQYGMYNQNLQAVPPTGSISYINGSTSSIHPIAAKI 621

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K    G       ++ N+             +L+Y+  S                  
Sbjct: 622 EIRKEGKLGRVYYPAPYMTND-------------NLEYYQDS------------------ 650

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 651 YEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYIRLRQ 710

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 711 -MALEGTEVEG 720


>gi|281179682|dbj|BAI56012.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE15]
          Length = 714

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISERYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|161622627|ref|YP_001595353.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
 gi|160331905|gb|AAU29205.2| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
          Length = 751

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 204/794 (25%), Positives = 340/794 (42%), Gaps = 86/794 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258
            +  LI  +EP+Y  V A+ L+  LR+EV      +P+    H   C+      PE   R
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 117

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           Y  E              ++ +L + +K+ERDF   Y G   L ++Y +     G   E 
Sbjct: 118 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 163

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           PQ  F  + +G+AL + E   R    + FY+ +S+      TP +  + T   Q SSC +
Sbjct: 164 PQ--FAIMCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 221

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R  G+ I     K  GVIPF K    
Sbjct: 222 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 281

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R 
Sbjct: 282 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 341

Query: 494 TQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +N   TLFSP E+  +L+  Y ++ E   E YE       I+  ++I A  L+   +T 
Sbjct: 342 GKNDYITLFSPHEMGGELYYSYFEDQERFRELYEAAEKDSSIRK-KRIKARDLFELFMTE 400

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606
              T   +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  
Sbjct: 401 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 458

Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
               F  + FD+   DK+       VR LDN++D   + + +A K+    R +G+G+  +
Sbjct: 459 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 513

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PI
Sbjct: 514 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 571

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +  D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+
Sbjct: 572 D---WYNKKIDQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 627

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G+F  V   + N    + L+D A      +     GN         K
Sbjct: 628 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYA------WSLAKKGN---------K 669

Query: 844 IHATAFEIDPMWLIESASRR-----QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            + T   I   W+ +SAS       Q +      +++ LD       D +Y   W  G K
Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLD-------DLLY--FWYFGGK 720

Query: 899 TTYYLRSRSATSVE 912
             YY  +R  +  +
Sbjct: 721 NLYYHNTRDGSGTD 734


>gi|303253583|ref|ZP_07339721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247986|ref|ZP_07530016.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302647503|gb|EFL77721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855501|gb|EFM87674.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 756

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y        
Sbjct: 65  AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            KA L   +  ++ L  +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAIKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+ D +   ++FE  Y  YE+     +    R + AV L+  ++
Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL      N  +++ LA  +   VR LD ++D   + ++ AK +    R++G+G++
Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFNETSYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS       + EL    T  L   W+ L+  +K  G+RNS   ++ P+ T + I   +
Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWESLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K++  G    VV  +     +   LWD   I D+  +   +G +    
Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891
                                    QK+IDQA S N   D       +   K+L      
Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720

Query: 892 AWLMGLKTTYYLRSR 906
           A+  GLKT YY  +R
Sbjct: 721 AYKYGLKTLYYQNTR 735


>gi|315298702|gb|EFU57956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
          Length = 701

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDKKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 SNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|157159104|ref|YP_001463985.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|157081134|gb|ABV20842.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
          Length = 714

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 189/680 (27%), Positives = 310/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N+   
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTDHDISCNLGSLNIA-- 423

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L  
Sbjct: 424 ---NTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|125624346|ref|YP_001032829.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124493154|emb|CAL98118.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300071130|gb|ADJ60530.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 722

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 200/720 (27%), Positives = 321/720 (44%), Gaps = 91/720 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288
           +E +T  +K+  +   +E      +      EE ++A  L +   +F +  L  +L K+E
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
             F   ++     Y++Y +  N   + + + F  RV M         EK A      + +
Sbjct: 91  FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +
Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524
              D++ R   ++    +PD F + V +     LF P  V      YGK F   +I  E 
Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y++     EI+    I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNL
Sbjct: 325 YDKMVANPEIRK-TPINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        LN       V     CNLGS N+L    ++    D+  +++ + VR L
Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRAL 437

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++
Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497

Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740
           ++ + AS +LA E+G  SSFK         GS +D+     D    ++    EL   +  
Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSPKVQELFKGIAV 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W EL+  VKT G+ NS  MA+AP  +I+ I   S SI P                
Sbjct: 555 PTIADWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +VN +++R    E  +  + Y    +   E IP      + +A++ D   +I+  
Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644

Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++    P G             + L  +   A+  G+KT YY+R+
Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|110806692|ref|YP_690212.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110616240|gb|ABF04907.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 5 str. 8401]
 gi|281602051|gb|ADA75035.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313648325|gb|EFS12769.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332753900|gb|EGJ84275.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332755582|gb|EGJ85945.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332765625|gb|EGJ95838.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333015921|gb|EGK35257.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
          Length = 714

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 315/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    + T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|30064042|ref|NP_838213.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|56480159|ref|NP_708489.2| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30042298|gb|AAP18023.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|56383710|gb|AAN44196.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 301]
          Length = 701

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 306/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    + T+ TAVR L
Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFSRTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCITLPT 549

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|191167117|ref|ZP_03028938.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|190902899|gb|EDV62627.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
          Length = 714

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|227502984|ref|ZP_03933033.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|227076045|gb|EEI14008.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
          Length = 720

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 187/672 (27%), Positives = 311/672 (46%), Gaps = 71/672 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332
           DF+ +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M  L L +
Sbjct: 86  DFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLGD 144

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            + E  A    + + +  F  +TPT  N+G +   +L SCFL  + D++  I  ++    
Sbjct: 145 GDGE-LAERLVDEIMTGRFQPATPTFLNAGKQQRGELVSCFLLRIEDNMESIGRSINSAL 203

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 204 QLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 263

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+ 
Sbjct: 264 LNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVE 320

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N 
Sbjct: 321 RVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMYEDTVNR 379

Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFD 617
            +P +    ++ SNLC+EI  +NS+SE  A            CNLGS+N+         D
Sbjct: 380 ANPVK-TSRINMSNLCSEILQVNSASELNADLSYDQVGNDISCNLGSLNIAM-----TMD 433

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               + T+ TA+R L +V D  +  ++   +K N    AIGLG M     L   HI Y S
Sbjct: 434 SPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIKYGS 493

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLA 730
            E ++  +     I + A+ AS ++A+ERG  ++ F  S +  G F     P +      
Sbjct: 494 EEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPESDYASGEFFDSYDPAEFQPRTE 553

Query: 731 EVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +V+   D  ++   +   W ELK+ V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 554 KVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIAS 613

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + ++                         E  I  + Y    + N     D+L+     
Sbjct: 614 KIEIRK------------------------EGKIGRVYYPAAHMDN-----DNLEYFK-D 643

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++EI    ++++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 644 SYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRVR 703

Query: 907 SATSVEKSTLKG 918
              ++E + ++G
Sbjct: 704 Q-MALEGTEIEG 714


>gi|226365903|ref|YP_002783686.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           opacus B4]
 gi|226244393|dbj|BAH54741.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           opacus B4]
          Length = 711

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 188/663 (28%), Positives = 297/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E+ A 
Sbjct: 87  DHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---EELAT 143

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 144 KLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 203

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 204 VALLLSNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 263

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  
Sbjct: 264 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 323

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  + YE   D+   K   KI A   ++ +  + FE+G+P+I ++D  N  +P    G V
Sbjct: 324 VTEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMYEDTVNRANPI--AGKV 379

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+  E               CNLGS+N+         D    A TI T
Sbjct: 380 THSNLCSEILQVSTPSEFNDDLSYSHIGKDISCNLGSLNIA-----KTMDSPDFAQTIET 434

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  +  ++   KK+N    AIGLG M     L    I Y S E ++  +  
Sbjct: 435 SIRALTAVADQTSIDSVPSIKKANDEGHAIGLGQMNLHGYLARERIHYGSDEGIDFTNIY 494

Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + FHAI AS E+A+ERG Y + F  S +  G +       + E + E    L  +  
Sbjct: 495 FYTVVFHAIRASNEIAKERGTYFAGFPESKYASGEYFDKYTDQVWEPKTERVRQLFADAG 554

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
             +P    W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 555 LHIPTQDDWRELKASVQQHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKI 614

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       +L N+                       N+E   D        A+EI    +
Sbjct: 615 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 643

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 644 IDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 702

Query: 916 LKG 918
           ++G
Sbjct: 703 VEG 705


>gi|281413956|ref|ZP_06245698.1| ribonucleotide-diphosphate reductase subunit alpha [Micrococcus
           luteus NCTC 2665]
          Length = 693

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 189/673 (28%), Positives = 298/673 (44%), Gaps = 76/673 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y+  F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 61  FEFVRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 120

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            E    A    + + +  F  +TPT  NSG +   +L SCFL  + D++  I   +    
Sbjct: 121 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 238 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 294

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y    D   IK   KISA   ++ +  + FE+G+P++ F+D  N 
Sbjct: 295 RVYGVPFSEISVTEKYYEMVDDARIKK-TKISAREFFQTIAEIQFESGYPYVVFEDTVNA 353

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P +  G +  SNLC+EI   S + E               CNLGS+N+         D
Sbjct: 354 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 406

Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                 ++ TA+R L  V +  +  ++    K N    AIGLG M     L   H+ Y S
Sbjct: 407 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGS 466

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIG 727
            E ++  +     + FHA+ AS  +A E G  +  F+ S +  G F           +  
Sbjct: 467 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 526

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +AE+  +  +   ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 527 RVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVAS 586

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + + K    G       +L NE             +L+Y++                  
Sbjct: 587 KIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE------------------ 615

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R 
Sbjct: 616 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRL 675

Query: 906 RSATSVEKSTLKG 918
           R   ++E + ++G
Sbjct: 676 RQ-LALEGTEVEG 687


>gi|227537624|ref|ZP_03967673.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242510|gb|EEI92525.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 701

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 171/611 (27%), Positives = 289/611 (47%), Gaps = 66/611 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+ L L   E   +A+E+  +  +  +  +TPT  N+G  R  +L SCFL  + D+L G
Sbjct: 123 VAVALFLAREEGVAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNG 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+   GG+  + + +R  G  I G  G++ GV+P +K+  DT    NQ G
Sbjct: 183 IGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++    L 
Sbjct: 243 QRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLI 302

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +  Y  E ++    YE       IK  +KI+A  L  K+     E+G+P+I 
Sbjct: 303 YPHTVMQEYGQYLDELDMDL-MYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIF 360

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAH 610
           FK+  N       +G V  SNLCTEI        +N   +E  +     CNLGS+N+   
Sbjct: 361 FKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNVATV 420

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++  T++TA+R L  V D+ +   +    K+N    ++GLG M     L  
Sbjct: 421 MDNK-----RIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER---------GAYSSFKGSLWDQGV 720
             I Y S EA++ A+     ++++++ AS+E+A+ER          AY+   G+ +D+  
Sbjct: 476 SFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYAD--GTYFDK-Y 532

Query: 721 FPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              D +    +V++    M+  +   W +LK++VK  G+ ++  +AIAP  + + I   +
Sbjct: 533 LSRDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNAT 592

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P                     +V+ ++ R+  D      + Y          + +
Sbjct: 593 ASVMP---------------------IVDIIEVREYGDSTTYYPMPY----------LTN 621

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           D      +A+++D M ++   S  Q+ IDQ  S  L+ + + S + L   Y  A  +GLK
Sbjct: 622 DNYFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLK 681

Query: 899 TTYYLRSRSAT 909
           + YY R+R +T
Sbjct: 682 SLYYTRTRKST 692


>gi|238695378|ref|YP_002922571.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
 gi|220029514|gb|ACL78448.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
          Length = 751

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 204/794 (25%), Positives = 340/794 (42%), Gaps = 86/794 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-----PEYFCR 258
            +  LI  +EP+Y  V A+ L+  LR+EV      +P+    H   C+      PE   R
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQF--EPRSFIDHISYCVNEGKYDPELLSR 117

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           Y  E              ++ +L + +K+ERDF   Y G   L ++Y +     G   E 
Sbjct: 118 YSAE--------------EITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYET 163

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           PQ  F  + +G+AL + E   R    + FY+ +S+      TP +  + T   Q SSC +
Sbjct: 164 PQ--FAIMCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVV 221

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R  G+ I     K  GVIPF K    
Sbjct: 222 IEAGDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQT 281

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R 
Sbjct: 282 AVKSCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERF 341

Query: 494 TQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +N   TLFSP E+  +L+  Y ++ E   E YE       I+  ++I A  L+   +T 
Sbjct: 342 GKNDYITLFSPHEMGGELYYSYFEDQERFRELYEAAEKDPSIRK-KRIKARDLFELFMTE 400

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSIN 606
              T   +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  
Sbjct: 401 RSGTARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSA-- 458

Query: 607 LLAHFANNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
               F  + FD+   DK+       VR LDN++D   + + +A K+    R +G+G+  +
Sbjct: 459 ----FVLDNFDWQDQDKINELAEVQVRALDNLLDYQDYPVPEALKAKK-RRNLGVGVTNY 513

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y   +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PI
Sbjct: 514 AAWLASNFASYE--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPI 571

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +  D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+
Sbjct: 572 D---WYNKKIDQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIE 627

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G+F  V   + N    + L+D A      +     GN         K
Sbjct: 628 PPRGPVSIKESKEGNFRQV---VPNVEHNQGLYDYA------WSLAKKGN---------K 669

Query: 844 IHATAFEIDPMWLIESASRR-----QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            + T   I   W+ +SAS       Q +      +++ LD       D +Y   W  G K
Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLD-------DLLY--FWYFGGK 720

Query: 899 TTYYLRSRSATSVE 912
             YY  +R  +  +
Sbjct: 721 NLYYHNTRDGSGTD 734


>gi|307257035|ref|ZP_07538811.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864519|gb|EFM96426.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 756

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y        
Sbjct: 65  AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            KA L   +  ++ L  +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSSIRQGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+ D +   ++FE  Y  YE+     +    R + AV L+  ++
Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL      N  +++ LA  +   VR LD ++D   + ++ AK +    R++G+G++
Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS       + EL    T  L   W+ L+  +K  G+RNS   ++ P+ T + I   +
Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K++  G    VV  +     +   LWD   I D+  +   +G +    
Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891
                                    QK+IDQA S N   D       +   K+L      
Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720

Query: 892 AWLMGLKTTYYLRSR 906
           A+  GLKT YY  +R
Sbjct: 721 AYKYGLKTLYYQNTR 735


>gi|307250238|ref|ZP_07532193.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857724|gb|EFM89825.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 756

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y        
Sbjct: 65  AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            KA L   +  ++ L  +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+ D +   ++FE  Y  YE+     +    R + AV L+  ++
Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL      N  +++ LA  +   VR LD ++D   + ++ AK +    R++G+G++
Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS       + EL    T  L   W+ L+  +K  G+RNS   ++ P+ T + I   +
Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K++  G    VV  +     +   LWD   I D+  +   +G +    
Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891
                                    QK+IDQA S N   D       +   K+L      
Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720

Query: 892 AWLMGLKTTYYLRSR 906
           A+  GLKT YY  +R
Sbjct: 721 AYKYGLKTLYYQNTR 735


>gi|300916823|ref|ZP_07133527.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300415889|gb|EFJ99199.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
          Length = 701

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +N +SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 375 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPT 549

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|300771014|ref|ZP_07080891.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762287|gb|EFK59106.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 701

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 171/611 (27%), Positives = 289/611 (47%), Gaps = 66/611 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+ L L   E   +A+E+  +  +  +  +TPT  N+G  R  +L SCFL  + D+L G
Sbjct: 123 VAVALFLAREEGVAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNG 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+   GG+  + + +R  G  I G  G++ GV+P +K+  DT    NQ G
Sbjct: 183 IGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++    L 
Sbjct: 243 QRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLI 302

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +  Y  E ++    YE       IK  +KI+A  L  K+     E+G+P+I 
Sbjct: 303 YPHTVMQEYGQYLDELDMDL-MYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIF 360

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAH 610
           FK+  N       +G V  SNLCTEI        +N   +E  +     CNLGS+N+   
Sbjct: 361 FKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNIATV 420

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++  T++TA+R L  V D+ +   +    K+N    ++GLG M     L  
Sbjct: 421 MDNK-----RIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER---------GAYSSFKGSLWDQGV 720
             I Y S EA++ A+     ++++++ AS+E+A+ER          AY+   G+ +D+  
Sbjct: 476 SFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYAD--GTYFDK-Y 532

Query: 721 FPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              D +    +V++    M+  +   W +LK++VK  G+ ++  +AIAP  + + I   +
Sbjct: 533 LNRDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNAT 592

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P                     +V+ ++ R+  D      + Y          + +
Sbjct: 593 ASVMP---------------------IVDIIEVREYGDSTTYYPMPY----------LTN 621

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           D      +A+++D M ++   S  Q+ IDQ  S  L+ + + S + L   Y  A  +GLK
Sbjct: 622 DNYFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLK 681

Query: 899 TTYYLRSRSAT 909
           + YY R+R +T
Sbjct: 682 SLYYTRTRKST 692


>gi|46143781|ref|ZP_00134248.2| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208466|ref|YP_001053691.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|190150314|ref|YP_001968839.1| ribonucleoside-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303251075|ref|ZP_07337261.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307245898|ref|ZP_07527983.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307252628|ref|ZP_07534521.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307254870|ref|ZP_07536695.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259313|ref|ZP_07541042.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307261474|ref|ZP_07543144.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263657|ref|ZP_07545268.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097258|gb|ABN74086.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915445|gb|ACE61697.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650085|gb|EFL80255.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853258|gb|EFM85478.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306859873|gb|EFM91893.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306862167|gb|EFM94136.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866680|gb|EFM98539.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306868826|gb|EFN00633.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871034|gb|EFN02767.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 756

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 208/795 (26%), Positives = 339/795 (42%), Gaps = 97/795 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   +I 
Sbjct: 5   LMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++     +  P   TH +      +Y        
Sbjct: 65  AAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTHIKKLVALGKY-------- 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
            KA L   +  ++ L  +   L + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 116 DKALLTDYNEQEWQL--MNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSACL-FSQYPKATRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D L  I      +A + KY     G+G +   +R LG+ I        G IPF K    
Sbjct: 231 GDSLDSINAT---SAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQT 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+
Sbjct: 288 AVKSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRL 347

Query: 494 TQNAGWTLFSPDEVSDLH-DLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+ D +   ++FE  Y  YE+     +    R + AV L+  ++
Sbjct: 348 IKGGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLM 403

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
                TG  +I   D CN  SP    V  +  SNLC EI L        N  + E A+C 
Sbjct: 404 QERASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCT 463

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL      N  +++ LA  +   VR LD ++D   + ++ AK +    R++G+G++
Sbjct: 464 LSAFNLGT--LQNLDEFEPLADLV---VRALDALLDYQDYPVKAAKHAALARRSLGIGVI 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ 
Sbjct: 519 NYAYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGIL 578

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS       + EL    T  L   W+ L+  +K  G+RNS   ++ P+ T + I   +
Sbjct: 579 PIDS------YKKELDNLTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P    + +K++  G    VV  +     +   LWD   I D+  +   +G +    
Sbjct: 633 NGIEPPRGYVSIKASKDGILKQVVPEYEKLRSQYELLWD---IPDMSGYLQLVGIM---- 685

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQ 891
                                    QK+IDQA S N   D       +   K+L      
Sbjct: 686 -------------------------QKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLT 720

Query: 892 AWLMGLKTTYYLRSR 906
           A+  GLKT YY  +R
Sbjct: 721 AYKYGLKTLYYQNTR 735


>gi|170683654|ref|YP_001744826.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|170521372|gb|ACB19550.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
          Length = 714

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+S+               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASDYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 SNWQPKTAKVGELFARSGVTLPTREMWAQLRDDVMCYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|239917557|ref|YP_002957115.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838764|gb|ACS30561.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
          Length = 725

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 189/673 (28%), Positives = 298/673 (44%), Gaps = 76/673 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y+  F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 93  FEFVRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 152

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            E    A    + + +  F  +TPT  NSG +   +L SCFL  + D++  I   +    
Sbjct: 153 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 209

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 210 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 269

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 270 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 326

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y    D   IK   KISA   ++ +  + FE+G+P++ F+D  N 
Sbjct: 327 RVYGVPFSEISVTEKYYEMVDDARIKK-TKISAREFFQTIAEIQFESGYPYVVFEDTVNA 385

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P +  G +  SNLC+EI   S + E               CNLGS+N+         D
Sbjct: 386 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 438

Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                 ++ TA+R L  V +  +  ++    K N    AIGLG M     L   H+ Y S
Sbjct: 439 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGS 498

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIG 727
            E ++  +     + FHA+ AS  +A E G  +  F+ S +  G F           +  
Sbjct: 499 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 558

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +AE+  +  +   ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 559 RVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVAS 618

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + + K    G       +L NE             +L+Y++                  
Sbjct: 619 KIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE------------------ 647

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R 
Sbjct: 648 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRL 707

Query: 906 RSATSVEKSTLKG 918
           R   ++E + ++G
Sbjct: 708 RQ-LALEGTEVEG 719


>gi|12642667|gb|AAK00339.1| ribonucleotide reductase large subunit [Bovine herpesvirus 2]
          Length = 784

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 275/599 (45%), Gaps = 61/599 (10%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F+N L S   + +TP + N GT      SC+L   P        A    A LA  +G + 
Sbjct: 200 FFNNLYSHAIVPATPAMLNLGTTGCYTGSCYLIN-PQ-------AQTSQAALAAITGNVS 251

Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           +      G+G  +   N    G    +P LK  +    A N+  +R   VC Y+E WH D
Sbjct: 252 SILAKNGGVGLCMQSLNDAQAGQNSSVPVLKALDSLVAAYNKNSRRPTGVCVYVEPWHSD 311

Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L  R    G++ +R  ++ TA W+PDLF +R+       ++  WTLF      +L 
Sbjct: 312 ILALLRTRGVLAGEEAQRCDNIFTALWMPDLFFERLIRYLNGDKDMHWTLFDHKTGGELA 371

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            LYG EFE  Y   ER+   GE    R I+  A+ R   T    TG P++ FKD  N   
Sbjct: 372 SLYGAEFEKKYVELEREG-LGERVSIRDIT-YAIVRSAAT----TGSPFVMFKDAVNRHY 425

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                G  +  SNLCTEI   +    + VCNLGS+N+     +  FD+D+L S +R  V 
Sbjct: 426 IYDTQGEAIACSNLCTEIVHPADQNMSGVCNLGSVNVAHCVVDGVFDFDRLRSAVRACVL 485

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +++ +ID       + ++  +  R++G+G+ G  +A   + +   S E         E +
Sbjct: 486 MVNVMIDSTSLPTVQCRRGQNKLRSMGIGMQGLHTACLKMGLDMVSQEFRRTNKLIAEVM 545

Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWD 747
              A+ AS  L    GA  +  F  S++  G F  +   G+     +E          W+
Sbjct: 546 LLSAMQASNALCMH-GAPPFREFGRSMYRNGKFHWEGFPGVTPAFPEE----------WE 594

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL++ +K  G+RNS  +A+ PT T + +  VS+S  P++ NL+ K   SG+    N  L+
Sbjct: 595 ELRRNIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPTFTNLFSKVTKSGEVLRPNVLLL 654

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD----------DLKKIHATAFEIDPMWLI 857
            EL  R  +D   +S  K  D S+   +  PD           L++   TAF+ +   LI
Sbjct: 655 KEL--RRTFDGPRLS--KVMD-SLDKHQWTPDLAIPCLDEASPLRRFK-TAFDYNQEDLI 708

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           +  + R  ++D +QSL LY+ E +        L  +   A+  GLKT  YY + R AT+
Sbjct: 709 DLCADRAPYVDHSQSLTLYVTERADGTLPASMLTRLLVHAYKRGLKTGMYYCKVRKATN 767


>gi|194432998|ref|ZP_03065281.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194418725|gb|EDX34811.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
          Length = 701

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 549

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 550 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 609

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 610 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 638

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 639 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|320180202|gb|EFW55138.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|332088655|gb|EGI93768.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
          Length = 714

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 305/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|291326471|ref|ZP_06124645.2| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291314338|gb|EFE54791.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 710

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 186/672 (27%), Positives = 304/672 (45%), Gaps = 72/672 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF+ +       Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 77  DFEFIKALFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA-- 134

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
               E  A  + + + +  F  +TPT  N G +   +L SCFL  + D++  I  ++   
Sbjct: 135 -QGSESLAKLYVDEIITGRFQPATPTFLNCGKKQRGELISCFLLRIEDNMESIGRSVNSA 193

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   
Sbjct: 194 LQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 253

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP ++  +
Sbjct: 254 YLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQDMYLFSPYDIERI 313

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  +  + Y    +   IK + KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 314 YGVPMSEISVT-DKYHEMVNNKAIKKY-KINAREFFQTLAEIQFESGYPYILFEDTANRA 371

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDY 618
           +P    G ++ SNLC+EI  +N  S            +   CNLGS+N+         D 
Sbjct: 372 NPI--AGRINMSNLCSEILQVNRPSVYEDDLSYQQIGKDISCNLGSMNIA-----KTMDS 424

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A +I  AVR L  V D+ +  ++    + N    AIGLG M     L   HI Y S 
Sbjct: 425 PDFAQSIAAAVRALSAVSDMSDIRSVPSIAEGNRQSHAIGLGQMNLHGYLAREHIYYGSE 484

Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGL----- 728
           EA++  +     ++++A+  S +LA ER  A+  F+ S +  G +    I++I L     
Sbjct: 485 EALDFTNIYFYAVTYYALKTSNQLAIERKTAFVGFEHSTYASGDYFDKYINNIWLPKTQT 544

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+     +   +R  W  LK+ V T G+ N N  AI PT +I+ I   + SI P    
Sbjct: 545 VQELFRRSGIEIPTREDWQALKQSVITYGIYNQNLQAIPPTGSISYINNSTSSIHPIVSR 604

Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + + K    G       F+ NE                       N+E   D        
Sbjct: 605 IEIRKEGKIGRVYYPAPFMTNE-----------------------NLEYYQD-------- 633

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R R
Sbjct: 634 AYQIGPEKIIDTYAMATQHVDQGLSLTLFFKDDATTRDINRAQIYAWRKGIKTLYYIRLR 693

Query: 907 SATSVEKSTLKG 918
             T++E + ++G
Sbjct: 694 Q-TALEGTEVEG 704


>gi|13508063|ref|NP_110012.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pneumoniae M129]
 gi|2500208|sp|P78027|RIR1_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1674206|gb|AAB96160.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           pneumoniae M129]
          Length = 721

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 167/613 (27%), Positives = 281/613 (45%), Gaps = 69/613 (11%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           RV M +         +A++    + +  F  +TPT  N+G  +  +  SC+L  + D++ 
Sbjct: 127 RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+     L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ 
Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSFSYANQL 246

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+       N    L
Sbjct: 247 GQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMAL 306

Query: 502 FSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP    D+++ YGK   +  +    YE  A++   K F  I+A   ++ +  + FE+G+
Sbjct: 307 FSP---YDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGY 361

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSIN 606
           P+I F D  N R+   H   +  SNLC+EI   S+  E               CNLGS+N
Sbjct: 362 PYILFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLN 419

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +      + +  ++ A+  LD V  + N  T    +K N  + A+GLG M    
Sbjct: 420 IAKAMESG----PEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHG 475

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------GSLWDQG 719
            L    I Y SPEA++  +     +++HA  AS ELA E+G + +F+      GS +D+ 
Sbjct: 476 FLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKY 535

Query: 720 V-----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +     F       +  +  +  +   +R  W EL   ++  G+ NS+ +AIAPT +I+ 
Sbjct: 536 IKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISY 595

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+         V ++ +N    +D +         Y DG     
Sbjct: 596 LSSCTPSLQPVVSPVEVRKEGRLGRIYVPAYQLN----KDSYP-------FYKDG----- 639

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I  A+  Q+ +DQA SL L++ D+ + + L+  Y  A+
Sbjct: 640 -------------AYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAF 686

Query: 894 LMGLKTTYYLRSR 906
             G  + YY+R R
Sbjct: 687 KKGCSSIYYVRVR 699


>gi|309795134|ref|ZP_07689553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308121105|gb|EFO58367.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 701

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|193071023|ref|ZP_03051951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218696272|ref|YP_002403939.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|192955681|gb|EDV86156.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218353004|emb|CAU98820.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli 55989]
          Length = 714

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 195/682 (28%), Positives = 316/682 (46%), Gaps = 80/682 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------Q 718
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +          Q
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQ 539

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +   +   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 540 GNWQPKTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + + K   +G       F+ NE       + A+  D              
Sbjct: 599 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------- 637

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
                     A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 638 ----------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY+R R   ++E + ++G
Sbjct: 688 IKTLYYIRLRQ-MALEGTEIEG 708


>gi|255324327|ref|ZP_05365448.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255298657|gb|EET77953.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 720

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 181/675 (26%), Positives = 308/675 (45%), Gaps = 77/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DF  +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M       
Sbjct: 86  DFSFIKELFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLAD 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
                A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     
Sbjct: 145 GDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQ 204

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    +PD+  +   +N    LFSP    D+  
Sbjct: 265 NAHHPDIMNFLDTKRENADEKIRIKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVER 321

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 322 VYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRA 380

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618
           +P +    ++ SNLC+EI  +NS+SE  A            CNLGS+N+         D 
Sbjct: 381 NPVK-TSWINMSNLCSEILQVNSASEFNADLTYEELGSDISCNLGSLNIAM-----TMDS 434

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A+T+ TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S 
Sbjct: 435 PDFANTVETAIRGLTAVADKTSIDSVPSVRRGNDESHAIGLGQMNLHGYLGREHIEYGSE 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF-----PID---SIGL 728
           E ++  +     + + A+ AS ++A+ERG Y +    S +  G F     P +       
Sbjct: 495 EGLDFTNAYFAAVLYAALRASNKIARERGEYFTELPQSEYASGEFFDRYDPEEFKPKTKK 554

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D  +++  S   W++LK+ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 555 VQELFDASSIHTPSAQDWEDLKQDVAKYGLYNRNLQAVPPTGSISYINNSTSSIHPIASK 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844
           + ++                                   +G IG +      + +D  + 
Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNDNLEY 640

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              ++EI    ++++ +   K++DQ  SL L+  D  + ++++     AW  G+KT YY+
Sbjct: 641 FKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTATTREVNRAQIYAWRKGIKTLYYI 700

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 701 RLRQ-MALEGTEVEG 714


>gi|300815922|ref|ZP_07096146.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300531851|gb|EFK52913.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
          Length = 701

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 193/677 (28%), Positives = 309/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329
           +Y RDF                 +LG    Y  Y L   +G R    + F  RV M  L 
Sbjct: 66  RYSRDFVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 123

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
           L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 124 LAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 182

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 183 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 242

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    
Sbjct: 243 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 299

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I ++D 
Sbjct: 300 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 358

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614
            N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH    
Sbjct: 359 VNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 411

Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I 
Sbjct: 412 TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 471

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------QGVFPI 723
           Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +          QG +  
Sbjct: 472 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQP 531

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 532 KTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 590

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE       + A+  D                   
Sbjct: 591 PIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------- 624

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 625 -----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLY 679

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 680 YIRLRQ-MALEGTEIEG 695


>gi|293364079|ref|ZP_06610815.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
 gi|292552569|gb|EFF41343.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
          Length = 726

 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 168/594 (28%), Positives = 277/594 (46%), Gaps = 86/594 (14%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T +R 
Sbjct: 156 YQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARAISTSLQLSKRGGGVALCLTNLRE 215

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H DV  FLD ++  
Sbjct: 216 LGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLDSKREN 275

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD+  +   +N   +LFSP +V  ++     +  I  E Y    
Sbjct: 276 ADEKIRIKSLSLGLVVPDITFELAKKNEDMSLFSPYDVEKVYKKPFSDISITKEYYNMLN 335

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           ++   K +  +SA   +  +  + FE+G+P++ F D  N RS     G +  SNLC+EI 
Sbjct: 336 NKAIKKTY--VSARKFFTSIAELHFESGYPYLLFDDTVNDRSALP--GRIIMSNLCSEIA 391

Query: 590 LNSSSE------------ETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNV 635
             SS              E   CNLGS+N+  L H        +K + +I  ++  L+++
Sbjct: 392 QPSSPSTYNADLSYKTMGEDIACNLGSMNIDKLMHAG------EKFSESIYRSIYALNHI 445

Query: 636 ---IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               D+ +  TIEK  K N   RAIGLG M     L + HI Y S EAVE  D      +
Sbjct: 446 STNSDLSSAPTIEKGNKKN---RAIGLGAMNLHGFLAVNHIFYNSQEAVEFTDLFFYTFA 502

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------------GLLAEVRDELAM 738
           +HA  AS  L ++  G +  F+ + +  G +  D                +AE+  +  +
Sbjct: 503 YHAFKASNRLVKDGFGKFEGFENTKFATGEY-FDKYTKVSDEEYKPKHASVAELFRKHNV 561

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W EL K ++  G+ NS+ MAIAPT +I+ + G + S+ P   ++ V+      
Sbjct: 562 HIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVSDVEVRK----- 616

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHAT-AFEIDP 853
                                        +G +G +     +I D+ K+ +   A+E+ P
Sbjct: 617 -----------------------------EGKLGRVYVPAYKISDENKEFYKLGAYEVGP 647

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           M +I+  +  QK IDQA SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 648 MPIIDIVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFSKKCASIYYVRIR 701


>gi|306836785|ref|ZP_07469745.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
 gi|304567331|gb|EFM42936.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
          Length = 720

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 187/672 (27%), Positives = 310/672 (46%), Gaps = 71/672 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKE 332
           DF+ +       Y   F F+ +LG    Y  Y L     R  + + F  RV+M  L L +
Sbjct: 86  DFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLGD 144

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            + E  A    + + +  F  +TPT  N+G +   +L SCFL  + D++  I  ++    
Sbjct: 145 GDGE-LAERLVDEIMTGRFQPATPTFLNAGKQQRGELVSCFLLRIEDNMESIGRSINSAL 203

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 204 QLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 263

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+ 
Sbjct: 264 LNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVE 320

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YGK F +I+  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N 
Sbjct: 321 RVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPYIMYEDTVNR 379

Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFD 617
            +P +    ++ SNLC+EI  +NS SE  A            CNLGS+N+         D
Sbjct: 380 ANPVK-TSRINMSNLCSEILQVNSPSELNADLSYDQVGNDISCNLGSLNIAM-----TMD 433

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               + T+ TA+R L +V D  +  ++   +K N    AIGLG M     L   HI Y S
Sbjct: 434 SPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHAIGLGQMNLHGYLGREHIEYGS 493

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLA 730
            E ++  +     I + A+ AS ++A+ERG  ++ F  S +  G F     P +      
Sbjct: 494 EEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPESDYASGEFFDSYDPAEFQPRTE 553

Query: 731 EVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +V+   D  ++   +   W ELK+ V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 554 KVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAVPPTGSISYINNSTSSIHPIAS 613

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + ++                         E  I  + Y    + N     D+L+     
Sbjct: 614 KIEIRK------------------------EGKIGRVYYPAAHMDN-----DNLEYFK-D 643

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++EI    ++++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 644 SYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRVR 703

Query: 907 SATSVEKSTLKG 918
              ++E + ++G
Sbjct: 704 Q-MALEGTEIEG 714


>gi|167044788|gb|ABZ09456.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG8D6]
          Length = 885

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 165/642 (25%), Positives = 299/642 (46%), Gaps = 58/642 (9%)

Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337
           A  LK    F++++ +G   L   +F  +    +E+ +   M+V+    L     +K   
Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247

Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I     + A++ 
Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIMKTTSDAALIF 307

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513
           WH D+E+F+  +   G       +++   W  D +   V    G +TL SP +       
Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 417

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571
                          +  GEI   + I  +A         +++  P + F D  N  +  
Sbjct: 418 --------------NSSAGEINAHQLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626
            +   G + ++N C E +L         CNLGSI   NL+   A+ Q  FD+ +    I 
Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYEFDWQRYEEIII 513

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  +   + 
Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E   +      W
Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L ++++  G+RN     +APT T++ +   S  ++P++  ++ K    G F   N   
Sbjct: 626 GALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I     + + +  Q W
Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I  A +  + + ++ + + +   Y  A  MGLK     R  S
Sbjct: 746 ISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGS 787



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A            +++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPD-------KELATQLSDAVLAKLTEHGFS 66

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           A     +E IQD VE +L+  GH  I + Y+LYR ER  +R
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107


>gi|331674196|ref|ZP_08374956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331068290|gb|EGI39685.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 714

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + I+A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYASGEYFRQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|167045242|gb|ABZ09901.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG9M20]
 gi|167045330|gb|ABZ09987.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG10D8]
          Length = 885

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 165/642 (25%), Positives = 299/642 (46%), Gaps = 58/642 (9%)

Query: 282 ANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--- 337
           A  LK    F++++ +G   L   +F  +    +E+ +   M+V+    L     +K   
Sbjct: 188 AEYLKKLDGFSYKFKIGSYYLNKWHFRCLINCYVELAKQGMMKVSFKELLTMLASKKFDA 247

Query: 338 ---RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I     + A++ 
Sbjct: 248 YADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIMKTTSDAALIF 307

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 308 KSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIMEV 367

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDL 513
           WH D+E+F+  +   G       +++   W  D +   V    G +TL SP +       
Sbjct: 368 WHPDIEKFITNKTEPG--VLENFNVSVGVW-KDFWDVLVNSGDGKYTLRSPKD------- 417

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-- 571
                          +  GEI   + I  +A         +++  P + F D  N  +  
Sbjct: 418 --------------NSSAGEINAHQLIDLIA------QSAWKSAEPGLIFFDNINKYNVF 457

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI---NLLAHFANNQ--FDYDKLASTIR 626
            +   G + ++N C E +L         CNLGSI   NL+   A+ Q  FD+ +    I 
Sbjct: 458 AKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYEFDWQRYEEIII 513

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  +   + 
Sbjct: 514 KTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYNSKEGYDFQLKL 573

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E   +      W
Sbjct: 574 AEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVS--GYYEKPKEEQYYD------W 625

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L ++++  G+RN     +APT T++ +   S  ++P++  ++ K    G F   N   
Sbjct: 626 GALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVTVGRFFYTNKIF 685

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I     + + +  Q W
Sbjct: 686 EQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSDHLLAQAVWQDW 745

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I  A +  + + ++ + + +   Y  A  MGLK     R  S
Sbjct: 746 ISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGS 787



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A            +++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPD-------KELATQLSDAVLAKLTEHGFS 66

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           A     +E IQD VE +L+  GH  I + Y+LYR ER  +R
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIR 107


>gi|193065976|ref|ZP_03047035.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|260845323|ref|YP_003223101.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|192926390|gb|EDV81025.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|257760470|dbj|BAI31967.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|323159822|gb|EFZ45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
          Length = 714

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 190/680 (27%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|239833483|ref|ZP_04681811.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
 gi|239821546|gb|EEQ93115.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
          Length = 722

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 184/660 (27%), Positives = 300/660 (45%), Gaps = 73/660 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA   
Sbjct: 90  FNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALA--- 146

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 147 RGNEQLARDLMEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 206

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 207 QLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 266

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 267 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 326

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  ++ E Y    D   I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 327 GMPLTEISVS-EKYREMVDDARIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 384

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A   ++ F   
Sbjct: 385 PID--GRITMSNLCSEILQVSEASVFREDLSYDYLGKDISCNLGSLNIAAAMDSSDF--- 439

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI T++R L  V D++   ++    + N    AIGLG M     L    I Y S E
Sbjct: 440 --GKTIETSIRSLTAVSDMSHIGSVPSVARGNDESHAIGLGQMNLHGYLARERIYYGSEE 497

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIG 727
            V+  +     +++HAI AS  +A E G ++  F+ S +  G +          P  +  
Sbjct: 498 GVDFTNIYFYTVTYHAIRASNLIAVEAGKSFKGFEKSKYASGEYFDKYTEQLWEP--ATE 555

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            + E+ D+  +   ++  W +LKK V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 556 RVREIFDKAGIAIPTQDDWRDLKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP--- 612

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V++++ R    E  I  + Y    + N     D+L   +  
Sbjct: 613 ------------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQD 645

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 646 AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 705


>gi|227358545|ref|ZP_03842870.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
 gi|227161256|gb|EEI46330.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
          Length = 714

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 184/675 (27%), Positives = 307/675 (45%), Gaps = 78/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 81  DFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRVCMVALTLAQG 140

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
            T   K A    + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 141 NT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 197

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   
Sbjct: 198 LQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 257

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  +
Sbjct: 258 YLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERV 317

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    +  EI+  +KI A A ++ +  + FE+G+P+I F+D  N  
Sbjct: 318 YGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPYIMFEDTVNRA 375

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDY 618
           +P    G ++ SNLC+EI  +NS+SE               CNLGS+N+         D 
Sbjct: 376 NPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIAM-----AMDS 428

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A T+  A+R L +V  +    ++   +K N    AIGLG M     L    I Y S 
Sbjct: 429 PDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYLAREGIYYGSE 488

Query: 678 EAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDSIGL 728
           E ++  +     ++++A+ AS +LA E +  +  F+ S +  G +         +     
Sbjct: 489 EGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYLSKQWLPKTQK 548

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +I+ I   + SI P    
Sbjct: 549 VHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHSTSSIHP---- 604

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844
                            +V  ++ R              +G IG +      + ++ +  
Sbjct: 605 -----------------IVAPIEIRK-------------EGKIGRVYYPAPFMTNENRHF 634

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI    +I++ ++  + IDQ  SL L+  DE + + ++     AW  G+KT YY+
Sbjct: 635 YQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGIKTLYYI 694

Query: 904 RSRSATSVEKSTLKG 918
           R R  T++  + +KG
Sbjct: 695 RIRQ-TALAGTEIKG 708


>gi|251788643|ref|YP_003003364.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247537264|gb|ACT05885.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 715

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 178/629 (28%), Positives = 282/629 (44%), Gaps = 81/629 (12%)

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           +L   G R+ M       VA+ LA  + +  ++ V+    + S  F  +TPT  N G R 
Sbjct: 123 YLENYGERVCM-------VALTLARGDAQLAQQLVD---EMMSGRFQPATPTFLNCGKRQ 172

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GV
Sbjct: 173 RGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGV 232

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD R+   D++ R   ++    
Sbjct: 233 IPIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVV 292

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD+ +     N    LFSP +V  ++ +   E  ++ E Y+   +  EI+    I+A  
Sbjct: 293 IPDITLHLARNNQDMHLFSPYDVERIYGMPLSEISVS-EKYDELVNHPEIRKC-AINARQ 350

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------ 598
            ++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI   S + E        
Sbjct: 351 FFQTLAELQFESGYPYLMFEDTVNGNNPV--AGRITMSNLCSEILQVSRASEYQEDLSYR 408

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651
                  CNLGS+N+         D   LA ++  AVR L  V D+ + + +      N 
Sbjct: 409 LVGKDISCNLGSLNI-----AKVMDGGNLAHSVAIAVRALTAVSDMSHINAVPSIAAGNA 463

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
              AIGLG M     L    I Y S EA++  +     +++HA+  S  LAQER   ++ 
Sbjct: 464 ESHAIGLGQMNLHGYLAREGILYGSEEALDFTNLYFYTVTYHALLTSSLLAQERNQTFAG 523

Query: 711 FKGSLWDQGVFPIDSIGL----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSN 762
           F  S +  GVF    +        E   EL M     LP    W  LK+RV   G+ N N
Sbjct: 524 FADSQYASGVFFDRYLSQEWQPATERVRELFMVAGIALPLREDWLALKRRVMRYGLYNQN 583

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P                     +V+ ++ R         
Sbjct: 584 LQAVPPTGSISYINHATASIHP---------------------IVSRIEIRK-------- 614

Query: 823 DLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
                +G +G +      + +D ++ +  A+EI P  +I++ +   + +DQ  SL L+  
Sbjct: 615 -----EGRLGRVYYPAPYMTNDNQRFYQDAYEIGPEKIIDTYAIATRHVDQGLSLTLFFP 669

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           D  + + ++     AW  G+KT YY+R R
Sbjct: 670 DTATTRDINKAQIYAWKKGIKTLYYIRVR 698


>gi|323978714|gb|EGB73796.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 714

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
           +L+    DF +   A+   +   F F+ +LG    Y  Y L     +  + + F  RV M
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKHYL-EDFADRVTM 132

Query: 327 -GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIF 384
             L L + +K   A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I 
Sbjct: 133 VALTLAQGDK-TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
               D+  +YGK F +IA  E+Y+       I+  + I+A   ++++  + FE+G+P+I 
Sbjct: 312 ---YDVERVYGKPFADIAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+  AVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAAKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|326914624|ref|XP_003203624.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Meleagris gallopavo]
          Length = 226

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 149/229 (65%), Gaps = 7/229 (3%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QGG KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 1   TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 60

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +
Sbjct: 61  ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----R 115

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V R + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 116 VRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 175

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + +
Sbjct: 176 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPV 224


>gi|218555223|ref|YP_002388136.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|218361991|emb|CAQ99597.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI1]
          Length = 714

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 193/677 (28%), Positives = 309/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329
           +Y RDF                 +LG    Y  Y L   +G R    + F  RV M  L 
Sbjct: 79  RYSRDFVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 136

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
           L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 137 LAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    
Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 312

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I ++D 
Sbjct: 313 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 371

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614
            N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH    
Sbjct: 372 VNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 424

Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I 
Sbjct: 425 TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 484

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------QGVFPI 723
           Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +          QG +  
Sbjct: 485 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQP 544

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 545 KTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE       + A+  D                   
Sbjct: 604 PIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD------------------- 637

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 638 -----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLY 692

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 693 YIRLRQ-MALEGTEIEG 708


>gi|16766118|ref|NP_461733.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|585859|sp|Q08698|RIR3_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|49258467|pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258468|pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258469|pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258470|pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|109157244|pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157245|pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|1184247|emb|CAA51699.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421356|gb|AAL21692.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|267994923|gb|ACY89808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|321223604|gb|EFX48669.1| Ribonucleotide reductase of class Ib aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332989684|gb|AEF08667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 714

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +       D     A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|67920554|ref|ZP_00514074.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858038|gb|EAM53277.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 1116

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 238/453 (52%), Gaps = 31/453 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+++   DG+  + N  ++  +V+ AC+  ++V+S  + +     + DG++  +++  LI
Sbjct: 32  KIRVRRRDGSWTALNIVKIRAVVDWACAD-REVNSIALEAGLTTRLRDGITTREIQDNLI 90

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +    EP++  +  R  +  L ++ L +   +  +  ++E+            + 
Sbjct: 91  NCALEMCSPDEPDWRYIAGRLHIWSLWKDTLVS---RGYQYGNYEIVA----------KT 137

Query: 263 GVKARLLHESMMDFDLVYLANDLKY---ERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            + A+     ++ +    L     +   + D  ++Y G  +L  RY L       E+PQ 
Sbjct: 138 KIDAKQYDNRLLTYSTAELQEAGSWINPDWDTDYDYAGAVLLTSRYLLDD-----ELPQE 192

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+  A+ LA  E+ + +   A  FY  ++      +TP L N       L+SCF+ ++ 
Sbjct: 193 AFLTCALLLATVESPENRLPWAKRFYEAIAKGKVSLATPILANLRVPGGSLTSCFILSID 252

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  IF  +   A ++K  GG+G + + +R  G+ + G N  S GVIP++K+ NDTA+A
Sbjct: 253 DNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGVIPWIKLLNDTAIA 312

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV    
Sbjct: 313 VNQGGRRAGAVTVGLDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKE 372

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P +V      +L +L+G++FE AY   E + DR EI ++++++A  L++ ++  
Sbjct: 373 EWTLVDPYQVKEKLGIELAELWGEKFEEAYGLIEAELDR-EITLYKRVNARELFKTIMRS 431

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             ETG P++ FKD  N  +P +HVG +   NLC
Sbjct: 432 QVETGMPYLAFKDTINKANPNKHVGYIPGVNLC 464



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 159/379 (41%), Gaps = 68/379 (17%)

Query: 563  FKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETA-VCNLGSINLLAHFANNQFDYD 619
            + D      P++H+G+ +   +  CTE   N +  + A  CNL S+NL A+    + DY 
Sbjct: 787  YDDTYCFSEPKRHLGMFNGILTGQCTESFSNVTPGKFAHCCNLVSLNL-ANIEEEELDY- 844

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                    +VR+LDN IDI       AK  N  +R +G+G MG    L    + Y   E 
Sbjct: 845  ----LCNISVRILDNTIDITNPPFNDAKAHNDRYRTVGVGCMGLADWLAKKGLTY---EN 897

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            +       E + +     S+ELA+ER  Y++F+GS W +G+     IG  ++  D    N
Sbjct: 898  ITEISNLFEEVGYWCTHTSMELAKERSPYNAFEGSDWSKGLL----IG--SKPVDWFVEN 951

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             + +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y   +      G  
Sbjct: 952  ASKKERWVQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYDKWAKGTI 1011

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             +   F+     +   W         YH+      +++                   +++
Sbjct: 1012 PIAPPFI-----KESFW--------FYHENKTLEQQKV-------------------VKA 1039

Query: 860  ASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+WID   S+ L         + DEP    + K +      AW  G K  YY+R  
Sbjct: 1040 VATIQQWIDTGISMELLFNLNQGVYFADEPERCLTAKDIFETLLLAWKEGCKAIYYVR-- 1097

Query: 907  SATSVEKSTLKGVDGKLNA 925
               +V+K   K  D    A
Sbjct: 1098 ---TVQKDDFKESDNNCTA 1113


>gi|313892094|ref|ZP_07825690.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313119486|gb|EFR42682.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 185/706 (26%), Positives = 314/706 (44%), Gaps = 104/706 (14%)

Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E DF F  L G    Y  Y L  +  +  + + F  R  M         E  A      +
Sbjct: 87  EYDFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKNLVGDI 145

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  + D++  I   +  +  L+K  GG+    T
Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD 
Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA--- 521
           ++   D++ R   ++    IPD+  +   +     LFSP    D++ +YGK   +I+   
Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDIYKVYGKPMTDISITK 322

Query: 522 -YENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            YEN  R       KV +  I+A   ++ +  + FE+G+P+I ++D  N R+P +  G +
Sbjct: 323 EYENLLRND-----KVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRI 377

Query: 580 HSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI    T ++ +E+ +         CNLGSIN+    A    D       I  
Sbjct: 378 VMSNLCSEIAQVSTASTYTEDMSYYHVGQDICCNLGSINI----AEAMKDGKNFGEMIGR 433

Query: 628 AVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           AV  LD V    D+NC  +I++  + NH   AIGLG M     L   HI Y +PEAV+  
Sbjct: 434 AVEALDRVSRASDLNCAPSIKRGNEENH---AIGLGAMNLHGFLSTHHIYYDTPEAVDFT 490

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           D      +++A  AS  +A ++GA++ F  S +  G +         +  +EL   +T R
Sbjct: 491 DMFFYATAYYAFKASHYMAMKKGAFTGFADSEYADGSY-------FKKYTEELNAPKTER 543

Query: 744 LP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +                W  L + +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 544 VKELFEKYNFYIPTQEDWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSP 603

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+         V ++ +++             + KY++                   A
Sbjct: 604 VEVRKEGKLGRVYVPAYEIDD------------ENYKYYEKG-----------------A 634

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+ A+  QK +DQA ++ L++  + + + L+  Y +A+     + YY+R R 
Sbjct: 635 YEVGPDAIIDVAAAAQKHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR- 693

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                +  L+G +       + + N          +C    EC+ C
Sbjct: 694 -----QDVLEGSEKFEEDSIIKNENKEVR------NCDGSEECQTC 728


>gi|161502143|ref|YP_001569255.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863490|gb|ABX20113.1| hypothetical protein SARI_00166 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 705

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIQNQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELLADSHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYIHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHALHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A+EI P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYEIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|303258317|ref|ZP_07344320.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302858763|gb|EFL81851.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 591

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 178/611 (29%), Positives = 274/611 (44%), Gaps = 96/611 (15%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  F  VA   A      ++     Y+  S      STP L    ++     SCF   +
Sbjct: 33  PQERFATVAETFASNPAHAQR----IYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYM 88

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D   G+   L E   L+   GG+G        +   I   + KS GV+P LK+ +   +
Sbjct: 89  QDTAEGLVNTLSEVNWLSMLGGGVG--------IHVDIRSADDKSVGVMPHLKIYDAACL 140

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           A  QG  R+G+  A+L+  H D+ +FL++RK TGD   RT +++    I D FM+ + ++
Sbjct: 141 AYRQGRTRRGSYAAFLDVDHPDIIQFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS 200

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
                   D+  +L D +                    +V   +SA  +W+++L +  +T
Sbjct: 201 M--VNADADDSWELRDPHSH------------------RVVEVVSARDIWQRILELRMQT 240

Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611
           G P+I F D  N   P      G+ +H SNLCTEI L +S + TAVC L S+NL    H+
Sbjct: 241 GEPYIVFIDAANRALPSWLSDKGLKIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDHW 300

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
             N QF        I   +  LDNV    ID   +++E+A+ S    R+IG+G +GF + 
Sbjct: 301 NTNEQF--------IPDVMEFLDNVLQYFIDNAPNSVERARYSALRERSIGIGALGFHAY 352

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    IP  S  A  I       I          L ++RG     K    D G       
Sbjct: 353 LQSKRIPIESVLAKSINYRMFSHIKEECARGDEILCEKRGPCPDAK----DAG------- 401

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPS 785
                                        I  R S+  A+AP A+ + I G  S SI+P 
Sbjct: 402 -----------------------------IPRRFSHWNAVAPNASSSLIMGATSPSIEPI 432

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+Y +  +SG   + N  L+  L++  L  + + + +  HDGS+ ++E +P  ++ + 
Sbjct: 433 RANIYRQDTLSGAHIIKNKMLIPVLEEYGLNSDEVWTSITAHDGSVQHLEALPQVIRDVF 492

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYY 902
            TA EID  WLI+ A+ RQ++IDQ QSLNL+   P+   + +++     AW +GLK+ YY
Sbjct: 493 KTAQEIDQRWLIDLAADRQEFIDQGQSLNLFF--PADVSIAYLHACHFLAWKVGLKSLYY 550

Query: 903 LRSRSATSVEK 913
            RS      +K
Sbjct: 551 CRSDKLRKADK 561


>gi|197284314|ref|YP_002150186.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|194681801|emb|CAR41038.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           HI4320]
          Length = 708

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 184/675 (27%), Positives = 307/675 (45%), Gaps = 78/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 75  DFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRVCMVALTLAQG 134

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
            T   K A    + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 135 NT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 191

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   
Sbjct: 192 LQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 251

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  +
Sbjct: 252 YLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERV 311

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    +  EI+  +KI A A ++ +  + FE+G+P+I F+D  N  
Sbjct: 312 YGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPYIMFEDTVNRA 369

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G ++ SNLC+EI  +NS+SE               CNLGS+N+         D 
Sbjct: 370 NPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIAM-----AMDS 422

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A T+  A+R L +V  +    ++   +K N    AIGLG M     L    I Y S 
Sbjct: 423 PDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYLAREGIYYGSE 482

Query: 678 EAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDSIGL 728
           E ++  +     ++++A+ AS +LA E +  +  F+ S +  G +         +     
Sbjct: 483 EGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYLSKQWLPKTQK 542

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +I+ I   + SI P    
Sbjct: 543 VHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHSTSSIHP---- 598

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844
                            +V  ++ R              +G IG +      + ++ +  
Sbjct: 599 -----------------IVAPIEIRK-------------EGKIGRVYYPAPFMTNENRHF 628

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI    +I++ ++  + IDQ  SL L+  DE + + ++     AW  G+KT YY+
Sbjct: 629 YQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGIKTLYYI 688

Query: 904 RSRSATSVEKSTLKG 918
           R R  T++  + +KG
Sbjct: 689 RIRQ-TALAGTEIKG 702


>gi|325973167|ref|YP_004250231.1| ribonucleoside-diphosphate reductase, subunit alpha [Mycoplasma
           suis str. Illinois]
 gi|323651769|gb|ADX97851.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           suis str. Illinois]
          Length = 662

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 163/598 (27%), Positives = 302/598 (50%), Gaps = 70/598 (11%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K A E  +L++   +  +TPT  NSG  R  +L SCFL    D +  I   +  +  L+K
Sbjct: 97  KLANEIADLITRQVYQPATPTFSNSGKKRSGELVSCFLLETEDSINSINYIIATSMQLSK 156

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +RG GA I   +  + GV+P LK+  +     +Q G R+G+  AYL  +
Sbjct: 157 IGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILENVFDYADQLGMRRGSGVAYLNIF 216

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ +F+D +K   D++ R   ++    IPD F++  T+N  + +F P+ +   + +  
Sbjct: 217 HFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLATENKNFFIFEPNTIYQKYKVLL 276

Query: 516 KEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            +  +  E Y++  AD+  +K  +++SA  +  ++  + FE+G+P++ + D  N + P +
Sbjct: 277 SDLNMN-EWYDKLAADKDILK--KELSARNVLTRIAQIQFESGYPYVIYIDNANKQHPLR 333

Query: 575 HVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLA 622
            +G +  SNLCTEI       T+    +E  +     CNL S+NL+     N  +   L 
Sbjct: 334 GLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCNLASLNLV-----NLLEEKDLE 388

Query: 623 STIRTAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             I  ++R L  V D+   +I+ A   +K+N + R++GLG++ F   L   ++ Y  PE 
Sbjct: 389 KVIDISMRALTAVSDLT--SIKNAPSIRKANESFRSVGLGVLNFTGVLLKNNLAYDDPEV 446

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGVFPIDSIGLLAEV 732
           +E AD     I+++++ AS  +A+E+   + +F+      GS +DQ  +  +S    +E 
Sbjct: 447 LEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSYFDQ--YLNNSFEPKSEK 504

Query: 733 RDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             EL  N     P  W +LK++V+  G+ N+  +AIAPT +I+ +   + SI P      
Sbjct: 505 VKELLKNIKVPSPEDWAKLKEKVQRDGLYNAYRLAIAPTQSISYLQSATASIQP------ 558

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                          +++ ++ R L+  +M         +   +  +  + + ++ +A++
Sbjct: 559 ---------------IISSIETR-LYGNSM---------TYFPMPFLTKENEHLYKSAYQ 593

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ID   LI+ ++  QK IDQ  S  LY+ +  + + L  +Y  A   GLK+ YY+R+++
Sbjct: 594 IDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHHKGLKSLYYVRTKN 651


>gi|157363198|ref|YP_001469965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
 gi|157313802|gb|ABV32901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
          Length = 839

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 167/571 (29%), Positives = 270/571 (47%), Gaps = 81/571 (14%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFL 373
           EF++LL+S  F+ ++PTLFNSG                                LS+CF+
Sbjct: 80  EFFDLLASRIFIPNSPTLFNSGMGVDYELLYKPLEQMELDDYSKIIQMRNHLHMLSACFV 139

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D + GIF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G I F+ V N 
Sbjct: 140 VPVEDSIDGIFTAVKEYALITKAGGGIGSNFSSLRPNGSFVAGTHGKASGPISFMHVFNS 199

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V QG +R+GA+   L   H D+ +F+  +K   D  +     N +  IP   M+R 
Sbjct: 200 AVSVVEQGYRRRGALMGILNIDHPDIMDFISAKKGN-DGEKVLRFFNISVGIP---MRR- 254

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                          +L  +Y ++  I   N+ +     EIKV   I      +KM    
Sbjct: 255 --------------EELLRIYERDGTIRL-NHSKWHGEKEIKVREII------QKMAQSA 293

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +ETG P + F    N          + S+N C EI L +       CNLGSI+L   +  
Sbjct: 294 WETGDPGMVFLGEMNRYYALYPHKEIISTNPCGEIGLGAYE----ACNLGSIDLAKLYTQ 349

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N  D+D L    R AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ + IP
Sbjct: 350 NGVDWDALEKATRIAVRFLDNVIDVNVFPIDKISKAVKESRRLGLGIMGFADLLYKMDIP 409

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW----DQGVFPIDSIGLL 729
           Y S EA  +A   M F++ H+   S +L +E+G +  F+ S +    D   F +D     
Sbjct: 410 YDSEEARRLAKNIMAFMALHSHEESSKLGEEKGNFPLFEQSRYHTEDDFVPFSMDESDYD 469

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E+ +                + V     RN   +AIAPT +I+NI   S  ++P++   
Sbjct: 470 EEIFEHF--------------RNVAPKFKRNVAVLAIAPTGSISNIADTSSGLEPNFLLA 515

Query: 790 YVK-SNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHA 846
           YV+  N          F VNE+ ++ L ++ +  I D    DG++ ++E I +++K++  
Sbjct: 516 YVRYVNKQNSDEREPLFYVNEVLKQKLPEDLINSIKDKLVEDGTLKHLE-IDEEIKRVFV 574

Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNL 875
            + +I P+  +      Q ++D   ++++NL
Sbjct: 575 VSHDIKPIDHLLMQEAFQCYVDNNISKTINL 605


>gi|197264971|ref|ZP_03165045.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243226|gb|EDY25846.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 705

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 195/677 (28%), Positives = 307/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 70  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 246

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    
Sbjct: 247 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 303

Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           D+   YGK F +IA  E Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D
Sbjct: 304 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFED 361

Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613
             N  +P    G ++ SNLC+EI  +NS+S                CNLGS+N +AH   
Sbjct: 362 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 416

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L    I
Sbjct: 417 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 474

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSI 726
            Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G +       D  
Sbjct: 475 AYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 534

Query: 727 GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 535 PKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 594

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE                       N++   D   
Sbjct: 595 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 628

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ Y
Sbjct: 629 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 683

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 684 YIRLRQ-LALEGTEIEG 699


>gi|229823056|ref|ZP_04449125.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
 gi|229787495|gb|EEP23609.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
          Length = 725

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 185/663 (27%), Positives = 307/663 (46%), Gaps = 90/663 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y+  F F+ ++     Y +Y L  N G+R    + +  R+A   L L + ++E  AV   
Sbjct: 91  YKMKFRFKSFMSAFKFYTQYALRTNDGAR--YLERYEDRIAFCALFLADGDQE-LAVRLR 147

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  +  +TPT  N+G  R  +L SCFL  V DD+  I   +     L++  GG+G 
Sbjct: 148 DEMISQRYQPATPTFLNAGRKRRGELVSCFLIQVSDDMNSIGRTINSALQLSRIGGGVGV 207

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  F
Sbjct: 208 NLSNLRAAGDPIKKIENASSGVVPVMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSF 267

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L  +K   D++ R   ++    +PD F +   ++    LFSP    D+  +YG+ F  AY
Sbjct: 268 LSTKKENADEKVRVKTLSLGVVVPDKFYELAAKDEPMYLFSP---YDVERIYGRPF--AY 322

Query: 523 ----ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
               E Y+   +  EI+   KISA  L  ++  +  E+G+P+I   D  N  +P    G 
Sbjct: 323 VDITEEYDNLVNNPEIRK-SKISARDLENEISKLQQESGYPYIVNIDTANRANPID--GT 379

Query: 579 VHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI        +N+  E   +     CNLGS N+      N  +    AS++ 
Sbjct: 380 ITMSNLCSEILQVQRPSHINNRQEFEVLGTDISCNLGSTNI-----PNMIESPDFASSVE 434

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TAVR L  V D  N   +   K  N     IGLG MG  +   +  + Y SPE+VE+ + 
Sbjct: 435 TAVRALTYVTDHSNIEAVPTVKHGNDLAHTIGLGGMGLHTLFAINQMEYGSPESVELTEA 494

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR- 743
               ++++ + AS ++A+ERG ++ +F+ S +  G +    I    +V  E      S+ 
Sbjct: 495 YFYALNYYTLVASNKIAKERGKSFDNFENSKYATGEYFDAYIQAPFQVTSEKVAAIMSKV 554

Query: 744 -LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            LP    W  LK+ V   G+ + N +AIAPT +I+ +   S S+ P  +           
Sbjct: 555 ALPTADDWRALKEAVAASGLYHQNRLAIAPTGSISYVNETSASLHPITR----------- 603

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  L+ E +++        +   Y+   + + E +P      + +A++ D   +I+
Sbjct: 604 -------LIEERQEKK-------TGKTYYPAPMLSNETLP-----YYKSAYDTDMRKVID 644

Query: 859 SASRRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYY 902
             +  QK IDQ  SL L++  + P G              + L+ +   AW  G+K+ YY
Sbjct: 645 VYAAAQKHIDQGMSLTLFMRSELPEGMYEWKEGRTNKMTTRDLNILRHYAWKKGIKSIYY 704

Query: 903 LRS 905
           +R+
Sbjct: 705 VRT 707


>gi|260856786|ref|YP_003230677.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257755435|dbj|BAI26937.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|323154886|gb|EFZ41078.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
          Length = 714

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYPNQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|301159372|emb|CBW18890.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|323131163|gb|ADX18593.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 714

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +       D     A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLHDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|205360490|ref|ZP_02684058.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349046|gb|EDZ35677.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 714

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 194/677 (28%), Positives = 307/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 79  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 138

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 139 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    
Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 312

Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           D+   YGK F +IA  E Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D
Sbjct: 313 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFED 370

Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613
             N  +P    G ++ SNLC+EI  +NS+S                CNLGS+N +AH   
Sbjct: 371 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 425

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L    I
Sbjct: 426 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 483

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727
            Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G +    +     
Sbjct: 484 AYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 543

Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE                       N++   D   
Sbjct: 604 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 637

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ Y
Sbjct: 638 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 692

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 693 YIRLRQ-LALEGTEIEG 708


>gi|300922751|ref|ZP_07138840.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301327385|ref|ZP_07220634.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300420936|gb|EFK04247.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300846039|gb|EFK73799.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 701

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 190/680 (27%), Positives = 311/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 298 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 354

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 355 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 412 ----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 467

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 468 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 527

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 528 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 587

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 588 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 624

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 625 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 676

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 677 TLYYIRLRQ-MALEGTEIEG 695


>gi|326796345|ref|YP_004314165.1| ribonucleoside-diphosphate reductase, subunit alpha [Marinomonas
           mediterranea MMB-1]
 gi|326547109|gb|ADZ92329.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           mediterranea MMB-1]
          Length = 754

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 179/678 (26%), Positives = 302/678 (44%), Gaps = 57/678 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G   + + +++  ++  A  GL++VS   V  +     ++G+  +D+   LI 
Sbjct: 4   LTVTKRNGVTENIDLEKIHKVITWAAEGLENVSVSQVELKAQIQFFEGIRTTDIHETLIK 63

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI E  P+Y  + AR  +  LR++     ++ P+         LY E+ C  +E+ 
Sbjct: 64  SAADLISENTPDYQYLAARLAIFHLRKKAFGQ-FEPPR---------LY-EHVCNLVEQN 112

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
              A +L++   + +L  +   + + RD  F Y  ++ L  +Y +   + G   E PQ  
Sbjct: 113 RYDAHILNDYSKE-ELDQINEFIDHSRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFI 171

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L     EKE R      FY+ +S F     TP +  SG R P  Q SSC L  
Sbjct: 172 YILVAACL-FANYEKETRLDLIKRFYDAVSQFKLSLPTPIM--SGIRTPTRQFSSCVLIE 228

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 229 CGDSLDSINATSSAVVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 288

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 289 KSCSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIK 348

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRK--ISAVALWRKML 550
               TLFSP +V  L+D +    ++F+  Y  YE+          RK  + A  L+    
Sbjct: 349 GGNITLFSPSDVPGLYDAFFADQEKFDRLYTMYEQDDS------IRKSTVKASELFTLFA 402

Query: 551 TMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCN 601
           +    TG  ++   D CN  SP    V  V  SNLC EI L        +    E A+C 
Sbjct: 403 SERASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLENVSDPDGEIALCT 462

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL A    +     +L       +R LD ++D   + I  A+ +    R +G+G++
Sbjct: 463 LSAFNLGALENLD-----ELEELSELIIRALDALLDYQNYPIPAAQNATELRRTLGVGVI 517

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L    + Y+   A E+  ++ E I +  + AS +L++E G   +F  + + +G+ 
Sbjct: 518 NYAYYLAKNGVRYSDGSANELTHKTFEAIQYFLLKASNKLSKEFGPCKAFNETTYSKGIL 577

Query: 722 PIDSIGLLAEVRDELAMNRTSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PID+       ++E+    +S L   W+ L+K +   G+RNS   A+ P+ T + I   +
Sbjct: 578 PIDT------YKEEVNKIVSSELYYDWESLRKDIVEYGLRNSTLSALMPSETSSQISNAT 631

Query: 780 QSIDPSYQNLYVKSNMSG 797
             I+P    + VK++  G
Sbjct: 632 NGIEPPRGFVSVKASKDG 649


>gi|194451930|ref|YP_002046770.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205359377|ref|ZP_02669536.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194410234|gb|ACF70453.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205336552|gb|EDZ23316.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 714

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGETFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|331648396|ref|ZP_08349484.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331042143|gb|EGI14285.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
          Length = 714

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P      ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPIAE--RINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|238794432|ref|ZP_04638042.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238726227|gb|EEQ17771.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 693

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 190/690 (27%), Positives = 310/690 (44%), Gaps = 79/690 (11%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  VEEGYYEKEVLERY-DFSFIKGLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA       +  VE    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 105 YEDRVCMVALTLAAGNPTLAQELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEEMYLFSPYDVEQVYGVPMSEISIS-EKYRAMVDDKRIRK-SKIKAREFFQILAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      +I TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 398 SLNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721
               L    I Y S EA++  +     + +HA+ AS +LA ERG  +  F  S +  G +
Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVVYHALRASNQLAIERGKHFKGFDESDYASGTY 512

Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I          +  +  + A+    +  W  L++ V   G+ N N  A+ PT +I+
Sbjct: 513 FTKYIEQRWQPKTAKVQALFAQAAIVLPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 572

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P                     +V+ ++ R              +G IG 
Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 598

Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  S + ++  
Sbjct: 599 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKA 658

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 659 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|261247948|emb|CBG25781.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
          Length = 714

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +       D     A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|161615702|ref|YP_001589667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365066|gb|ABX68834.1| hypothetical protein SPAB_03487 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 714

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|226226348|ref|YP_002760454.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
 gi|226089539|dbj|BAH37984.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
          Length = 859

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 167/590 (28%), Positives = 267/590 (45%), Gaps = 80/590 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-----------AVEFYNLLS 347
           +L  RY +   +G  +E P+  F RVA  +A    E ++R           A EFY L++
Sbjct: 21  VLEKRYLVKDKSGKPVEKPEDMFWRVATTVA----EADRRYGASDGAVQAIAEEFYFLMT 76

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGLGND 403
              F  ++PTL N+G    QLS+CF+  V D L     GI+  L+  A++ +  GG G  
Sbjct: 77  QRRFEPNSPTLMNAGRPLGQLSACFVLPVDDALSNGQSGIYDTLRSMALIHQSGGGTGFS 136

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ +  T G + G + F+++ + +  AV QGG R+GA    L   H DV EF+
Sbjct: 137 FSRLRSRGSMVRSTTGVASGPVSFMQLYDASTDAVKQGGTRRGANMGILRVDHPDVMEFI 196

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    +D  +  + N +  I   FM  V  +A + L  P  VS               
Sbjct: 197 ACK----EDLTKITNFNISVGITTKFMDAVKADANYDLVDP--VSK-------------- 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  +W KM+   + TG P + F D  N  +P  H+G   ++N
Sbjct: 237 -----------KVTGELRAREVWDKMILGAWRTGEPGVFFIDEANRYNPVPHLGDYEATN 285

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L +      VCNLGS+N+  + +N   D++ +   I  +   LDN+ID+N + +
Sbjct: 286 PCGEQPLLAYD----VCNLGSVNVGHYVSNGVVDWEAMRRDIALSTHFLDNIIDVNKYPL 341

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +    +   R IGLG+MGF   L  L IPY S E VE+  + MEF+       S  LA+
Sbjct: 342 PEIDALSKRIRRIGLGVMGFADMLVRLGIPYDSAEGVEMGRKVMEFLDVEGKKESERLAR 401

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSN 762
           ERGA+  +  S+W                 DE           D   +R++ +  +RN N
Sbjct: 402 ERGAFPEWAQSIWGP---------------DETCAR-------DANGQRIRPMQLLRNCN 439

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
              +APT TI+ I G S  ++P +   ++++        VN   V   K    + + ++ 
Sbjct: 440 VTTVAPTGTISIIAGCSSGLEPLFAVAFMRNQAGVMMPDVNEDFVAIAKAEGWYSDELME 499

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +    GS+ + E +P   + +  TA  I P + I   +  Q   D A S
Sbjct: 500 RIA-KTGSVQHAE-VPAKWQSVFNTANNISPEYHIRMQAAYQLHCDSAIS 547


>gi|82545244|ref|YP_409191.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81246655|gb|ABB67363.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           boydii Sb227]
 gi|332092048|gb|EGI97126.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 714

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +N +SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D++   ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|330998672|ref|ZP_08322402.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576533|gb|EGG58041.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 591

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 178/611 (29%), Positives = 274/611 (44%), Gaps = 96/611 (15%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  F  VA   A      ++     Y+  S      STP L    ++     SCF   +
Sbjct: 33  PQERFATVAETFASNPAHAQR----IYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYM 88

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D   G+   L E   L+   GG+G        +   I   + KS GV+P LK+ +   +
Sbjct: 89  QDTAEGLVNTLSEVNWLSMLGGGVG--------IHVDIRSADDKSVGVMPHLKIYDAACL 140

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           A  QG  R+G+  A+L+  H D+ +FL++RK TGD   RT +++    I D FM+ + ++
Sbjct: 141 AYRQGRTRRGSYAAFLDVDHPDIIQFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS 200

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
                   D+  +L D +                    +V   +SA  +W+++L +  +T
Sbjct: 201 M--VNADADDSWELRDPHSH------------------RVVEVVSARDIWQRILELRMQT 240

Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611
           G P+I F D  N   P      G+ +H SNLCTEI L +S + TAVC L S+NL    H+
Sbjct: 241 GEPYIVFIDAANRALPSWLSDKGLKIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDHW 300

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
             N QF        I   +  LDNV    ID   +++E+A+ S    R+IG+G +GF + 
Sbjct: 301 NTNEQF--------IPDVMEFLDNVLQYFIDNAPNSVERARYSALRERSIGIGALGFHAY 352

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    IP  S  A  I       I          L ++RG     K    D G       
Sbjct: 353 LQSKRIPIESVLAKSINYRMFSHIKEECARGDEILCEKRGPCPDAK----DAG------- 401

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
                                        I  R S+  A+AP A+ + I G  S SI+P 
Sbjct: 402 -----------------------------IPRRFSHWNAVAPNASSSLIMGATSPSIEPI 432

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+Y +  +SG   + N  L+  L++  L  + + + +  HDGS+ ++E +P  ++ + 
Sbjct: 433 RANIYRQDTLSGAHIIKNKMLIPVLEEYGLNTDEVWTSITAHDGSVQHLEALPQVIRDVF 492

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYY 902
            TA EID  WLI+ A+ RQ++IDQ QSLNL+   P+   + +++     AW +GLK+ YY
Sbjct: 493 KTAQEIDQRWLIDLAADRQEFIDQGQSLNLFF--PADVSIAYLHACHFLAWKVGLKSLYY 550

Query: 903 LRSRSATSVEK 913
            RS      +K
Sbjct: 551 CRSDKLRKADK 561


>gi|238750474|ref|ZP_04611975.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238711405|gb|EEQ03622.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 693

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 191/696 (27%), Positives = 318/696 (45%), Gaps = 91/696 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + +   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  VEEGYYEKEVLDKY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  VE    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 105 YEDRVCMVALTLAAGNPQIARDLVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V+ ++ L   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEDMYLFSPYDVAQVYGLPLSEISIS-EKYRELVDDKRIRK-SKIKAREFFQVLAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      +I TA+R L  V D+ +  ++   +K N    AIGLG M 
Sbjct: 398 SMNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    I Y S EA++  +     + +HAI AS +LA ERG+Y  FKG  +D+  + 
Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTLVYHAIRASNQLAIERGSY--FKG--FDESDYA 508

Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767
             S     +  ++  + +T+++                W  L++ V   G+ N N  A+ 
Sbjct: 509 --SGRYFTKYTEQSWLPKTAKVQALFAKSGIHIPNQQDWATLRQSVMAHGIYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P                     +V+ ++ R              
Sbjct: 567 PTGSISYINHSTSSIHP---------------------IVSPIEIRK------------- 592

Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +G IG +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 593 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATT 652

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 653 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|257125879|ref|YP_003163993.1| ribonucleoside-diphosphate reductase, subunit alpha [Leptotrichia
           buccalis C-1013-b]
 gi|257049818|gb|ACV39002.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 699

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 181/690 (26%), Positives = 315/690 (45%), Gaps = 82/690 (11%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLK------YERDFAF-EYLGLQILYDRYFLH 308
           F   +EE ++  + ++  ++F  +Y  +++K      Y++ F F  ++     Y  Y L 
Sbjct: 47  FFHNLEEKMRYLIKNDYYINFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSYALM 106

Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            +     +E  +     V++ LA    EK K   E+  +L +  +  +TPT  NSG  R 
Sbjct: 107 DDTGEKFLERYEDRIATVSLYLAQGNVEKAK---EYALMLINQEYQPATPTFLNSGKKRS 163

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D+L GI      +  L+   GG+  + + +R  G  I G  G++ GV+
Sbjct: 164 GELVSCFLDEMGDNLSGIGYIFDSSMKLSSIGGGVSINLSKIRARGEAIKGVEGRASGVL 223

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G+R GA   YL  +H D+ EFLD +K   D++ R   ++    +
Sbjct: 224 PIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIGVIV 283

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P+ FM+   ++     F+P  V   +  Y  E ++  E YE+  D   +K  +KI+A  L
Sbjct: 284 PNKFMQLAIEDEVCYTFNPHTVFLEYGQYLDEMDMN-EMYEKLVDNPNVKK-KKINAREL 341

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETA 598
             K+     E+G+P++ FKD  N     + +G V  SNLCTEI        +N+  EE  
Sbjct: 342 LVKISQTQKESGYPYLFFKDNANKEHALKEIGTVKFSNLCTEIMQLSEVSDINAYYEEDT 401

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N+     N      ++    + A+  L  V D+ N   +   KK+N  
Sbjct: 402 IRRGISCNLGSLNIATVMENK-----RIKEATKAAIDSLTMVSDLTNIDIVPSIKKANDE 456

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG M     L    I Y S EA++  +     ++F+++  S+E+A+E+G  +  F
Sbjct: 457 LHSVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKGETFKDF 516

Query: 712 KGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           + S +  G +             + I  L E      +   ++  W  LK++V   G+ N
Sbjct: 517 EKSEYANGNYFDKYITKEYVPQTEKIKQLFE-----GICIPTKEDWANLKEQVMKHGVYN 571

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           +  MAIAP  + + I   + S+ P                     +V+ ++ R+  D   
Sbjct: 572 AYRMAIAPNQSTSYIMNSTASVMP---------------------VVDTIEVREYGDSTT 610

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              + Y          + +D    + +A++++   +++  S  Q+ +DQ  S  LY    
Sbjct: 611 FYPMPY----------LTNDNYFFYKSAYDMNQKNILKLISVIQRHVDQGISTILYTKST 660

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            S + L  +Y  A  +GLK+ YY R+R AT
Sbjct: 661 DSTRDLARLYIYAHRLGLKSLYYTRTRKAT 690


>gi|329121527|ref|ZP_08250151.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
 gi|327469442|gb|EGF14912.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
          Length = 730

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 185/707 (26%), Positives = 317/707 (44%), Gaps = 106/707 (14%)

Query: 288 ERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E DF F  L G    Y  Y L  +  +  + + F  R  M         E  A +    +
Sbjct: 87  EYDFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKKLVGDI 145

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  + D++  I   +  +  L+K  GG+    T
Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD 
Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA--- 521
           ++   D++ R   ++    IPD+  +   +     LFSP    D++ +YGK   +I+   
Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDVYKVYGKPMTDISITK 322

Query: 522 -YENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            YEN  R  D+      RK  I+A   ++ +  + FE+G+P+I ++D  N R+P +  G 
Sbjct: 323 EYENLLRN-DK-----VRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGR 376

Query: 579 VHSSNLCTEI----TLNSSSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGSIN+    A    D       I 
Sbjct: 377 IVMSNLCSEIAQVSTASTYTEDMSYYHVGQDICCNLGSINI----AEAMKDGKNFGEMIG 432

Query: 627 TAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            AV  LD V    D+NC  +I++  + NH   AIGLG M     L   HI Y +PEAV+ 
Sbjct: 433 RAVEALDRVSRASDLNCAPSIKRGNEENH---AIGLGAMNLHGFLATHHIYYDTPEAVDF 489

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            D      +++A  AS  +A ++GA++ F  S +  G +         +  +EL + +T 
Sbjct: 490 TDMFFYATAYYAFKASHYMAMKKGAFTGFADSEYADGSY-------FKKYTEELNVPKTE 542

Query: 743 RLP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           ++                W  L + +K  G+ N++ +A+APT +I+ +   + S+ P   
Sbjct: 543 KVKELFEKYNFYIPTQEDWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVS 602

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + V+         V ++ +++             + KY++                   
Sbjct: 603 PVEVRKEGKLGRVYVPAYEIDD------------ENYKYYEKG----------------- 633

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+E+ P  +I+ A+  QK +DQA ++ L++  + + + L+  Y +A+     + YY+R R
Sbjct: 634 AYEVGPDAIIDVAAAAQKHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR 693

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 +  L+G +       + + N          +C    EC+ C
Sbjct: 694 ------QDVLEGSEKFEEDSIIKNENKEVR------NCDGSEECQTC 728


>gi|1710385|sp|P09853|RIR1_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            AltName: Full=Ribonucleotide reductase 136 kDa subunit;
            AltName: Full=Ribonucleotide reductase large subunit
 gi|330199|gb|AAA45806.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1144

 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 189/663 (28%), Positives = 300/663 (45%), Gaps = 84/663 (12%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 500  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 559

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I G +  +A+LA+ 
Sbjct: 560  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNV--SAILAR- 616

Query: 397  SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
            +GG+G      ND +P              +  ++P LKV +    A N+   R    C 
Sbjct: 617  NGGIGLCMQAFNDASP-------------GTASIMPALKVLDSLVAAHNKQSTRPTGACV 663

Query: 451  YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503
            YLE WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  W+LF 
Sbjct: 664  YLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFD 723

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             D    L D +G+EFE  YE+ E     GE    + + A A+ R   T    TG P+I F
Sbjct: 724  RDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDL-AYAIVRSAAT----TGSPFIMF 777

Query: 564  KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            KD  N        G  +  SNLCTEI   SS   + VCNLGS+NL    +   FD+  L 
Sbjct: 778  KDAVNRHYIYDTQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVSRRTFDFGMLR 837

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  V +++ +ID       +  + +   R++G+G+ G  +A   + +   S E  ++
Sbjct: 838  DAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLESAEFRDL 897

Query: 683  ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                 E +   A+  S  L   RGA  +S FK S++  G F  +              N 
Sbjct: 898  NTHIAEVMLLAAMKTSNALCV-RGARPFSHFKRSMYRAGRFHWERFS-----------NA 945

Query: 741  TSRL--PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            + R    W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+
Sbjct: 946  SPRYEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGE 1005

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853
                N+ L+ EL +R    + ++  +   +    ++ +    L   H      TAF+ D 
Sbjct: 1006 TLRPNTLLLKEL-ERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1064

Query: 854  MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907
              LI+  + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R 
Sbjct: 1065 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1124

Query: 908  ATS 910
            AT+
Sbjct: 1125 ATN 1127


>gi|306812444|ref|ZP_07446642.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|305854482|gb|EFM54920.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +Y K F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|300930528|ref|ZP_07145924.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300461584|gb|EFK25077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
          Length = 701

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 184/656 (28%), Positives = 304/656 (46%), Gaps = 72/656 (10%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +R
Sbjct: 491 HALRISMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTR 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIR----------- 599

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                E K R ++  A                 + ++   ++  A+EI    +I++ +  
Sbjct: 600 ----KEGKTRRVYYPAPF---------------MTNENLALYQDAYEIGAEKIIDTYAEA 640

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 641 TRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|330196|gb|AAA45805.1| ribonucleotide reductase 1 [Human herpesvirus 1]
          Length = 1137

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 493  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I   +  +A+LA+ 
Sbjct: 553  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610

Query: 397  SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
             G           +G  +   N    G   V+P LKV +    A N+   R    C YLE
Sbjct: 611  GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659

Query: 454  TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506
             WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D 
Sbjct: 660  PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
               L D +G+EFE  Y++ E      +I +  +  A  + R   T    TG P++ FKD 
Sbjct: 720  SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773

Query: 567  CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   +
Sbjct: 774  VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +  V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++   
Sbjct: 834  QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893

Query: 686  SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E +   A+  S  L   RGA  ++ FK S++  G F  +      + R          
Sbjct: 894  IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
              W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N
Sbjct: 946  --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858
            + L+ EL +R    + ++  +   D    ++ +    L+  H      TAF+ D   LI+
Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVPQALPCLEPTHPLRRFKTAFDYDQKLLID 1062

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
              + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|207858076|ref|YP_002244727.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|206709879|emb|CAR34232.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|308814594|ref|YP_003934868.1| aerobic NDP reductase large subunit [Shigella phage SP18]
 gi|308206186|gb|ADO19585.1| aerobic NDP reductase large subunit [Shigella phage SP18]
          Length = 751

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 206/792 (26%), Positives = 336/792 (42%), Gaps = 82/792 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK-NMYDGLSESDLETALI 203
           +++    G    F+ +++  ++  +C G         L ET K ++ DG++  D++T +I
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN--IDPYELYETIKPHLRDGMTTRDIQTVII 58

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             S  LI  +EP+Y  V A+  +  LR++V      +P+        C         + E
Sbjct: 59  KVSAGLISVEEPDYQYVAAKATMFALRKDVYGQF--EPRSFIDQISYC---------VNE 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G     L  S    ++ YL + +K+ERDF   Y G   L ++Y +     G   E PQ  
Sbjct: 108 GKYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFA 167

Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            M + M L   E T++ K    FY+ +S+      TP +  + T   Q SSC +    D 
Sbjct: 168 IMAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADS 227

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R  G+ I     K  GVIPF K       + +
Sbjct: 228 LKSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCS 287

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   
Sbjct: 288 QGGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYI 347

Query: 500 TLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           TLFSP E   +L+  Y    +   E YE       ++  ++I A  ++   +T    T  
Sbjct: 348 TLFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDVFELFMTERSGTAR 406

Query: 559 PWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFA 612
            +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +      F 
Sbjct: 407 VYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSA------FV 460

Query: 613 NNQFDY---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
            + FD+   DK+       VR LDN++D   + +++A K+    R +G+G+  + + L  
Sbjct: 461 LDSFDWQDQDKINELAEVQVRALDNLLDYQGYPVKEALKAKK-RRNLGVGVTNYAAWLAS 519

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               YA  +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID     
Sbjct: 520 NFASYA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPID---WY 574

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +  D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    +
Sbjct: 575 NKKIDQIAAPNYV-CDWAQLREDLVEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 633

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K +  G F   N  + N    + L+D A +          GN         K + T  
Sbjct: 634 SIKESKEGSF---NQVVPNIEHNKGLYDYAWVL------AKQGN---------KPYLTQV 675

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKL------DFIYRQAWLMGLKTT 900
            I             KWI Q+ S N Y D    P GK        D +Y   W  G K  
Sbjct: 676 AI-----------MLKWICQSASANTYYDPQNYPKGKVPMSVMLDDLMY--FWYFGGKNL 722

Query: 901 YYLRSRSATSVE 912
           YY  +R  +  +
Sbjct: 723 YYHNTRDGSGTD 734


>gi|222034375|emb|CAP77116.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli LF82]
          Length = 701

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +Y K F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|168233768|ref|ZP_02658826.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470517|ref|ZP_03076501.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456881|gb|EDX45720.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332204|gb|EDZ18968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 705

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNIYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|330908706|gb|EGH37220.1| ribonucleotide reductase of class 1b (aerobic), alpha subunit
           [Escherichia coli AA86]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 191/676 (28%), Positives = 306/676 (45%), Gaps = 89/676 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLA 329
           +Y RDF                 +LG    Y  Y L   +G R    + F  RV M  L 
Sbjct: 79  RYSRDFVITLFAHAHASGFRFKTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALT 136

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
           L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 137 LAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    
Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---Y 312

Query: 509 DLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I ++D 
Sbjct: 313 DVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDT 371

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANN 614
            N  +P      ++ SNLC+EI  +NS+SE               CNLGS+N +AH    
Sbjct: 372 VNRANPIAE--RINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH---- 424

Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I 
Sbjct: 425 TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 484

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI------ 726
           Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +      
Sbjct: 485 YGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQP 544

Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 545 KTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 604

Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + + K   +G       F+ NE       + A+  D                    
Sbjct: 605 IVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------------- 637

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
               A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 638 ----AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYY 693

Query: 903 LRSRSATSVEKSTLKG 918
           +R R   ++E + ++G
Sbjct: 694 IRLRQ-MALEGTEIEG 708


>gi|203288576|ref|YP_002223483.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
 gi|201084283|gb|ACH93871.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
          Length = 707

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/588 (27%), Positives = 285/588 (48%), Gaps = 62/588 (10%)

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G     +L SCFL  V D L  I   +     L+K  GG+  + + +R  G 
Sbjct: 160 ATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGE 219

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   D+
Sbjct: 220 EIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADE 279

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD F +   Q+  +   +P  V     L   + +   ++Y+  A   
Sbjct: 280 KSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFD-KDYDLLASNP 338

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588
            I + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  SNLCTEI    
Sbjct: 339 RI-IKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQ 397

Query: 589 ---TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
               + +  E   +     C LGS+N++ +  N+ F++     T+  A+R L +V+D +C
Sbjct: 398 TPSVIGNYGEGDVIGYDVSCILGSLNIV-NVINSDFEF-----TVDLAMRALTSVVDKSC 451

Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +     +K+N  +RA+GLG+M     L    IPY S EA++        ++F+++ +S+
Sbjct: 452 INNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSM 511

Query: 700 ELAQERGA-YSSFKGSLWDQG----VFPIDSIGLLAEVRDEL--AMNRTSRLPWDELKKR 752
            +A+ER + +  FK S +  G    ++  +     +EV  E+   +   S+  W+ LK  
Sbjct: 512 NIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGD 571

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           ++  G+ ++  +A+APT +I+ I   + S+ P                     +V  ++ 
Sbjct: 572 IQRYGLYHAYRLAVAPTQSISYIQNATTSLMP---------------------IVEPVEA 610

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R   +      + Y          +  +      +A+ +D   LI+  S  Q+ +DQ  S
Sbjct: 611 RVYGNSTTYYPMPY----------LSRENAIFFKSAYYMDMRKLIDLVSEAQRHVDQGIS 660

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             LY+ +E S ++L  +Y  A   GLK+ YY R+++  SV++  L  +
Sbjct: 661 TLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 707


>gi|194445580|ref|YP_002042052.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404243|gb|ACF64465.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 193/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +       D     A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|9629420|ref|NP_044641.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|132605|sp|P08543|RIR1_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP6; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|59539|emb|CAA32314.1| ribonucleotide reductase large subunit [Human herpesvirus 1]
          Length = 1137

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 186/661 (28%), Positives = 298/661 (45%), Gaps = 80/661 (12%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 493  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I   +  +A+LA+ 
Sbjct: 553  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILAR- 609

Query: 397  SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
            +GG+G      ND  P              +  V+P LKV +    A N+   R    C 
Sbjct: 610  NGGIGLCVQAFNDSGP-------------GTASVMPALKVLDSLVAAHNKESARPTGACV 656

Query: 451  YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503
            YLE WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF 
Sbjct: 657  YLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFD 716

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             D    L D +G+EFE  Y++ E      +I +  +  A  + R   T    TG P++ F
Sbjct: 717  RDTSMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMF 770

Query: 564  KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            KD  N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L 
Sbjct: 771  KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 830

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++
Sbjct: 831  DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDL 890

Query: 683  ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                 E +   A+  S  L   RGA  ++ FK S++  G F  +      + R       
Sbjct: 891  NKHIAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE- 945

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                 W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+  
Sbjct: 946  -----WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETL 1000

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855
              N+ L+ EL +R    + ++  +   D    ++ +    L+  H      TAF+ D   
Sbjct: 1001 RPNTLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKL 1059

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSAT 909
            LI+  + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT
Sbjct: 1060 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1119

Query: 910  S 910
            +
Sbjct: 1120 N 1120


>gi|37525252|ref|NP_928596.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784679|emb|CAE13579.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide
           reductase R1 subunit) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 709

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 182/671 (27%), Positives = 304/671 (45%), Gaps = 72/671 (10%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALK 331
           DF ++       Y + F F+ +LG    Y  Y L    N   +E  +     VA+ LA  
Sbjct: 76  DFTVIKKLFQQAYSKKFRFQTFLGAFKYYTSYTLKTFDNKRYLERYEDRVCMVALTLAQG 135

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +   +  A    + + S  F  +TPT  N G +   +L SCFL  + D++  I  ++   
Sbjct: 136 D---QMLACRLVDEMISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSA 192

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 193 LQLSKRGGGVAFLLSNLRETGAPIKMIQNQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 252

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  K    N    LFSP ++  +
Sbjct: 253 YLHAHHPDILRFLDTKRENADEKIRIKTLSIGVVIPDITFKLAKHNEDMYLFSPYDIQRV 312

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  +  E Y    +  +I+   KI+A   +  +  + FE+G+P+I ++D  N  
Sbjct: 313 YGVPMSEISMT-EKYAEMVNNQQIRK-SKINAREFFMALAELQFESGYPYIMYEDTVNNA 370

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS+SE           +   CNLGS+N +AH      D 
Sbjct: 371 NPIK--GRINMSNLCSEILQVNSASEYEEDLSYHHIGKDISCNLGSMN-IAH----TMDS 423

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TAVR L  V D+ +  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 424 PDFTLSIETAVRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYLAREKIHYGSE 483

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGL-------- 728
           E ++  +     +++HA+  S ++A ER +Y   FK S +  G F      +        
Sbjct: 484 EGIDFTNIYFYIVTYHALRTSNQIAIERNSYFKGFKDSRYANGEFFNKYTEITWQPQTKK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           ++++ ++  +   ++  W ELK  +   G+ N N  AIAPT +I+ I   + SI P    
Sbjct: 544 VSQLFEQAGIKIPNQQDWLELKASIMAHGIYNQNLQAIAPTGSISYINNSTSSIHPIVSR 603

Query: 789 LYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + + K   +G       F+ N                        N+E   D        
Sbjct: 604 IEIRKDGKTGRVYYPAPFMTN-----------------------NNLEYYQD-------- 632

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI P  +I++ +   + +DQ  SL L+  D+ + + ++     AW   +KT YY+R +
Sbjct: 633 AYEIGPEKIIDTYAIATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKRIKTLYYIRLK 692

Query: 907 SATSVEKSTLK 917
             T++E + ++
Sbjct: 693 Q-TALEGTEVQ 702


>gi|320186461|gb|EFW61189.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +N +SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D++   ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|167992528|ref|ZP_02573626.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205329296|gb|EDZ16060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|312913830|dbj|BAJ37804.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 705

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|222478370|gb|ACM62262.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|225644|prf||1308225A ribonucleotide reductase
          Length = 1137

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 493  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I   +  +A+LA+ 
Sbjct: 553  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610

Query: 397  SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
             G           +G  +   N    G   V+P LKV +    A N+   R    C YLE
Sbjct: 611  GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659

Query: 454  TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506
             WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D 
Sbjct: 660  PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
               L D +G+EFE  Y++ E      +I +  +  A  + R   T    TG P++ FKD 
Sbjct: 720  SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773

Query: 567  CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   +
Sbjct: 774  VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +  V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++   
Sbjct: 834  QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893

Query: 686  SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E +   A+  S  L   RGA  ++ FK S++  G F  +      + R          
Sbjct: 894  IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
              W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N
Sbjct: 946  --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858
            + L+ EL +R    + ++  +   D    ++ +    L+  H      TAF+ D   LI+
Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLID 1062

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
              + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|60202516|gb|AAX14644.1| ribonucleotide reductase large catalytic subunit mutant
           [Corynebacterium stationis]
          Length = 720

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 183/647 (28%), Positives = 289/647 (44%), Gaps = 68/647 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ +LG    Y  Y L     R  + + F  RV+M            A    + 
Sbjct: 98  YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    
Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD
Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523
            ++   D++ R   ++    IPD+      +N    LFSP    D+  +YGK F +I+  
Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           ++  +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SN
Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392

Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS S        EE      CNLGS+N+         D+     T+  A+R 
Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDFPDFGGTVEAAIRG 447

Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     +
Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744
            + A+ AS ++A+ERG  +S FK S +  GVF     P +      +V+ EL  N T   
Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++        
Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N     D+L      A+E+    +I++ 
Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 657 AVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLR 703


>gi|331664232|ref|ZP_08365138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331058163|gb|EGI30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
          Length = 714

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|56414766|ref|YP_151841.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363694|ref|YP_002143331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205360153|ref|ZP_02834878.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|56129023|gb|AAV78529.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197095171|emb|CAR60720.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205340774|gb|EDZ27538.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|302391884|ref|YP_003827704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
 gi|302203961|gb|ADL12639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
          Length = 749

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 187/652 (28%), Positives = 294/652 (45%), Gaps = 103/652 (15%)

Query: 299 QILYDRYFLHINGSR--IEMPQAFFMRVAMGLA---LKETEKEKRAVEFYNLLSSFHFMC 353
            +L DRY L  N  R  +E P+  F+RVA  +A     E ++E    EFYNL++ F F+ 
Sbjct: 11  NLLEDRY-LKRNEKREIVETPEELFIRVAENIAAAEEDEEKQEYYEEEFYNLMTDFKFLP 69

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++PTL N+GT   QL++CF+  V D + GIF A++  A++ K  GG G  ++ +R     
Sbjct: 70  NSPTLMNAGTELQQLAACFVLPVEDSMEGIFTAVRNAALIHKSGGGTGFAFSRLRPKDDV 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G S G + F+KV N     V QGGKR+GA    L   H D+ +F+  +    D  
Sbjct: 130 VKSTGGVSSGPLSFMKVFNSATNTVKQGGKRRGANMGMLRVDHPDILDFIHAKGELNDKN 189

Query: 474 RRTHD-----MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAY---E 523
           +  +D     +      P++                D+ S+ +   G   EF  A    E
Sbjct: 190 QELYDEFKESLEDTYLAPEVI--DKKLKQYKQKLLDDQFSNFNLSVGVTDEFMEAVKNDE 247

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           NYE    R   +V  ++ A  ++  ++   ++ G P + F D  N ++P  ++G + ++N
Sbjct: 248 NYELINPRTG-QVVGELDARKVFNLIVKYAWKNGEPGLVFLDEINHKNPVPNLGEIEATN 306

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L  +      CNLGSINL     +   D+++L  TI  AVR LDNVID+N + +
Sbjct: 307 PCGEQPLLPNE----ACNLGSINLSKFVDDGTVDWEELKETIDLAVRFLDNVIDMNNYPL 362

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           +K ++     R IGLG+MGF   L  L I Y S EAVE+A + M+FI+ HA   S +LA+
Sbjct: 363 DKIEEQVMKARKIGLGVMGFHEMLIKLGIAYNSDEAVEMAKKVMKFINEHAHQYSQKLAE 422

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GA+ +                                   W+E K +      RN+  
Sbjct: 423 EKGAFPA-----------------------------------WEESKYKTPK---RNATL 444

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             IAPT +I+ + G S  I+P +   Y  ++  G+ +           + D   EA    
Sbjct: 445 TTIAPTGSISFLAGTSGGIEPFFDFSYTHTDGDGNTSRF---------EYDFTSEAE--- 492

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                             +++  T  +I P W I+  +  Q ++D A S  + L   + K
Sbjct: 493 ------------------EEVLVTTMDIAPEWHIKIQAAFQNYVDNAVSKTINLPNTATK 534

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTD 930
           +     R+A+++     Y L  +  T     S E   LK  D K      TD
Sbjct: 535 E---DIREAYILA----YELNCKGLTVYRDGSRESQVLKSSDDKKEETLRTD 579


>gi|221102330|ref|XP_002161443.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 472

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 159/253 (62%), Gaps = 6/253 (2%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR---IEMPQAFFMRVAMGLALKETEKEK 337
           L N ++Y+RD+ F+Y G++ L   Y   ++ ++   IE PQ   MRVA+G+  ++ +   
Sbjct: 223 LQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDIDS-- 280

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +E Y+L+S  +F  +TPTLFN+GTR  Q+SSCFL  + D++  IF A+++ A  +K++
Sbjct: 281 -VIETYDLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWA 339

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G   + +R  G+ I GTNG + GV+P   + N  A  +NQGG+R G++  YLE  H 
Sbjct: 340 GGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHA 399

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +F DLRKNTG+D  R  D+  A W+P LFMKRV  +  W+L  PD+   L+ ++ +E
Sbjct: 400 DIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEE 459

Query: 518 FEIAYENYERQAD 530
           +   YE YE + +
Sbjct: 460 YVKLYEMYESEGN 472


>gi|168464073|ref|ZP_02697990.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|238909578|ref|ZP_04653415.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|195633333|gb|EDX51747.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 705

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|114318827|gb|ABI63501.1| UL39 [Human herpesvirus 1]
 gi|290766138|gb|ADD60115.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 184/658 (27%), Positives = 295/658 (44%), Gaps = 74/658 (11%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 493  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I   +  +A+LA+ 
Sbjct: 553  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILARN 610

Query: 397  SGGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
             G           +G  +   N    G   V+P LKV +    A N+   R    C YLE
Sbjct: 611  GG-----------IGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLE 659

Query: 454  TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506
             WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D 
Sbjct: 660  PWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDT 719

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
               L D +G+EFE  Y++ E      +I +  +  A  + R   T    TG P++ FKD 
Sbjct: 720  SMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMFKDA 773

Query: 567  CNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   +
Sbjct: 774  VNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAV 833

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +  V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++   
Sbjct: 834  QACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKH 893

Query: 686  SMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E +   A+  S  L   RGA  ++ FK S++  G F  +      + R          
Sbjct: 894  IAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE---- 945

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
              W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N
Sbjct: 946  --WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIE 858
            + L+ EL +R    + ++  +   D    ++ +    L+  H      TAF+ D   LI+
Sbjct: 1004 TLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLID 1062

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
              + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1063 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|312947210|gb|ADR28037.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 313/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHASGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +Y K F ++A  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYSKPFADVAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|48843724|ref|YP_025104.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
 gi|44829131|gb|AAS47821.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
          Length = 547

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 173/570 (30%), Positives = 248/570 (43%), Gaps = 92/570 (16%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ S+P L NS T  P   SCF+  V DDL  I     E   L+   GG    W  +R  
Sbjct: 53  FVYSSPILSNSKTGLP--ISCFIMDVKDDLLHIIDHSVEMRWLSINGGGCAGYWGNIRA- 109

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                    KS G +PF+   +   +A  QG  RKG+  AYL+  H D+ EF+++R   G
Sbjct: 110 ------PCDKSCGPMPFMHTLDADVLAYKQGSTRKGSYAAYLDISHPDIAEFINMRTPVG 163

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D  R+  +++    I D FMK V  +  W L  P                          
Sbjct: 164 DLNRKNLNLHHGVNISDNFMKAVENDLNWDLKDPCT------------------------ 199

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTE 587
            G +K    ISA+ LWR +L   F TG P++ F D  N +   + +     + SSNLC E
Sbjct: 200 -GSVK--ETISAMELWRSLLETRFRTGEPYLNFIDEANRKLHPALKAKNLKIKSSNLCNE 256

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT----I 643
           I L +    TAVC L S+NL       ++D  K +  +   V +L+NV+D+        +
Sbjct: 257 IHLPTDETRTAVCCLASLNL------EKYDDWKDSDVVECCVTMLNNVLDVFIEKAPPQL 310

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            KA  S    R+IGLG  G+   L    IP+ S  A+         I   A+ AS  L +
Sbjct: 311 SKAINSAKLERSIGLGTAGWAYYLMKHQIPFESFNAISCTKIIFGNIKTKALKASKSLCK 370

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                                   L  E  D                  +K  G+RN++ 
Sbjct: 371 ------------------------LYGEPED------------------LKNYGVRNAHL 388

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAP +  + I   S SI+P   N YV    +G   +VN +L   L  R   D      
Sbjct: 389 LAIAPNSNTSCILNTSPSIEPISGNAYVHKTRAGTHLIVNPYLKRVLIDRGKNDSETWDS 448

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +   DGS+ ++  + D  K +  TA+EID   LIE A+ RQK+I Q QSLNL+    + +
Sbjct: 449 IVNKDGSVQHLPFLTDREKLVFKTAYEIDQNVLIEQAALRQKYICQGQSLNLFFPPHTQR 508

Query: 884 K-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           K L  ++  AW +G K  YYLR+ ++ S E
Sbjct: 509 KILHKVHFDAWKLGCKGLYYLRTAASKSSE 538


>gi|321309598|ref|YP_004191927.1| ribonucleotide reductase of class Ib (aerobic) subunit alpha
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801442|emb|CBY92088.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 700

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 189/652 (28%), Positives = 312/652 (47%), Gaps = 71/652 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           DL    +F F+ Y+ ++  YD Y L  +  +  +E      +  A+ L  ++    K+  
Sbjct: 81  DLVKSYNFRFKSYMSIKKFYDSYALRTDDKKRFLERYDDRIIACALFLGRRDFNFAKKLA 140

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  +++    +  +TPT  N+G  R  +L SCFL  V D L  I   +     L+K  GG
Sbjct: 141 K--SMIEQ-KYQPATPTFSNAGKKRSGELVSCFLLEVDDSLNSINYIISTAMQLSKIGGG 197

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  GA I      + GVIP +K+  +     +Q G+R GA  AYL  +H D+
Sbjct: 198 VAINLSKLRARGAQIKHIEAAASGVIPVIKILENVFDYADQLGQRPGAGAAYLSIFHWDL 257

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P+ F+    + A + LF P  V   + ++  + +
Sbjct: 258 IEFLDCKKINADEKSRIQTLSLGLLVPNKFIDLCIEGADYYLFEPYTVFKKYGVHMSDMD 317

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           ++ + YE  A   +I + + ISA  +   +    FE+G+P+I + D  N ++P + +G +
Sbjct: 318 MS-KWYEVLAHDPDI-LKKSISARDVLNNIAKTQFESGYPYIIYIDTANKKNPLKKLGQI 375

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK-LASTIR 626
             SNLCTEI       T+    +   +     CNLGS+N+     N+ F+ +K L  TI 
Sbjct: 376 KMSNLCTEIFQIQETSTIKDYGDLDDIRYDVSCNLGSLNI-----NSLFEGEKNLEETIE 430

Query: 627 TAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            A+R L  V DI+  +I  A   +K+N    ++GLG M     L    + Y SPEAVE A
Sbjct: 431 VAMRALSMVSDIS--SIANAPGVRKANSELHSVGLGAMNLAGFLAKNKLHYDSPEAVEFA 488

Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELA- 737
                 I+F +I AS  +AQER   +  F+ S +  GV+ +  +       ++V  EL  
Sbjct: 489 SVLFAAINFFSIKASCLIAQERKKTFEGFEKSDYYSGVYFLKYLENDYLPKSDVVKELFK 548

Query: 738 -MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            M   +R  W EL K+VK  G+ N+  +AIAPT TI+ +   + SI P            
Sbjct: 549 DMKLPTREDWQELAKKVKECGLYNAYRLAIAPTQTISYLNNSTPSIAP------------ 596

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                    +V+ L+ R L+  +    L Y+     N      D    + +A+ +D   +
Sbjct: 597 ---------VVDVLETR-LYGNS----LTYYPMPFLN-----KDTWYYYKSAYLLDQKAI 637

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           I+  S  Q+ +DQ  S  LY+ +  S + L   Y  AW  GLK+ YY R+++
Sbjct: 638 IDMVSAIQEHVDQGISTVLYVTNNTSTRDLVRFYIYAWHKGLKSLYYTRTKN 689


>gi|332162771|ref|YP_004299348.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606877|emb|CBY28375.1| ribonucleotide reductase of class Ib (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325667001|gb|ADZ43645.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 716

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 187/690 (27%), Positives = 311/690 (45%), Gaps = 79/690 (11%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  VEEGYYEKEVLEKY-DFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  VE    + +  F  +TPT  N G +   +L SCFL  
Sbjct: 128 YEDRVCMVALTLAAGNQQVARDLVE---EIITGRFQPATPTFLNCGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +K+  D  
Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  ++ E Y    D   I    KI A   ++ +  + FE
Sbjct: 305 NEEMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDDKRIHK-SKIKAREFFQILAEIQFE 362

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLG 420

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      +I TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 421 SLNI-AHI----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 475

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721
               L    I Y S EA++  +     +++HAI AS +LA ERG  +  F  S +  G +
Sbjct: 476 LHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGNHFKGFDESAYASGEY 535

Query: 722 PID--------SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                          ++ +  +  ++   +  W  L++ V   G+ N N  A+ PT +I+
Sbjct: 536 FTKYTEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSIS 595

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P                     +V+ ++ R              +G IG 
Sbjct: 596 YINHSTSSIHP---------------------IVSPIEIRK-------------EGKIGR 621

Query: 834 I----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 622 VYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKA 681

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 682 QIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710


>gi|194737455|ref|YP_002115763.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197301107|ref|ZP_02663780.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194712957|gb|ACF92178.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288514|gb|EDY27891.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|290766060|gb|ADD60038.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 186/661 (28%), Positives = 298/661 (45%), Gaps = 80/661 (12%)

Query: 297  GLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------------ 341
            GLQ  + Y+ ++L    G  +E     + R+A  LA + T   +                
Sbjct: 493  GLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552

Query: 342  FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKY 396
            F++ L     + STP + N GTR+   SSC+L     TT    L  I   +  +A+LA+ 
Sbjct: 553  FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNV--SAILAR- 609

Query: 397  SGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
            +GG+G      ND  P              +  V+P LKV +    A N+   R    C 
Sbjct: 610  NGGIGLCVQAFNDSGP-------------GTASVMPALKVLDSLVAAHNKESARPTGACV 656

Query: 451  YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFS 503
            YLE WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF 
Sbjct: 657  YLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFD 716

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             D    L D +G+EFE  Y++ E      +I +  +  A  + R   T    TG P++ F
Sbjct: 717  RDTSMSLADFHGEEFEKLYQHLEVMGFGEQIPI--QELAYGIVRSAAT----TGSPFVMF 770

Query: 564  KDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            KD  N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L 
Sbjct: 771  KDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLR 830

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++
Sbjct: 831  DAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDL 890

Query: 683  ADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                 E +   A+  S  L   RGA  ++ FK S++  G F  +      + R       
Sbjct: 891  NKHIAEVMLLSAMKTSNALCV-RGARPFNHFKRSMYRAGRFHWER---FPDARPRYEGE- 945

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                 W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+  
Sbjct: 946  -----WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETL 1000

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855
              N+ L+ EL +R    + ++  +   D    ++ +    L+  H      TAF+ D   
Sbjct: 1001 RPNTLLLKEL-ERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKL 1059

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSAT 909
            LI+  + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT
Sbjct: 1060 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1119

Query: 910  S 910
            +
Sbjct: 1120 N 1120


>gi|198245896|ref|YP_002216783.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940412|gb|ACH77745.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624541|gb|EGE30886.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 191/647 (29%), Positives = 297/647 (45%), Gaps = 77/647 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +       D     A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLR 697


>gi|282599258|ref|YP_003358570.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
 gi|226973564|gb|ACO94317.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
          Length = 759

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 201/804 (25%), Positives = 351/804 (43%), Gaps = 94/804 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG+ + F+ ++   +V+ AC GL  VS   V++ +     D +    ++  LI 
Sbjct: 2   INVIKRDGSSVPFDIEKPHEVVDRACDGLTGVSMSEVIAASKIQFTDNMRTDRIQDILIQ 61

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ +LI   +PNY  V AR     LR+ V    YK P     H +     + F + I++ 
Sbjct: 62  AAASLISVDKPNYQYVAARLKSYDLRKAVYGQ-YKPP-----HLL-----DIFVKNIKQR 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQ 318
           V  R   +     +   L + + ++RD  F +  +  L ++Y L     +      E PQ
Sbjct: 111 VYDREFLDLYTTEEFNELNDVINHKRDKNFTWAAMGQLTEKYLLRDRSKKDSKIFYETPQ 170

Query: 319 AFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFL 373
             +M +AM L     +K+ R     +FY   S+  F   TP +  +G R P  Q SSC L
Sbjct: 171 VMYMGIAMAL-FSNWDKDSRLEMVKKFYEYASTGKFSLPTPIM--AGVRTPTRQFSSCVL 227

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I    +          G+G D   +RG+G+ I G      G+IPF+K    
Sbjct: 228 IKTGDTLDSINATAKTIVDYVSKRAGIGFDVGAIRGIGSPIRGGEMVHTGLIPFIKYLTG 287

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA  AY+  WH   ++ + L+ N G +  R   ++    I  +  +R+
Sbjct: 288 ALKSCSQGGIRGGAATAYIPLWHYQFDDVVVLKNNRGTEENRERRIDYGIQINRVMFERL 347

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                  LF P +  ++++ Y  +   F   YEN  + AD G ++  +K+ A  +++ +L
Sbjct: 348 VAKQPLYLFDPKDNREMYEAYFADVDKFRTLYENMIKAADAGLVRS-KKLQAEEVFQMLL 406

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEETAVCNL 602
               +TG  +I F D  N  SP  ++  ++SSNLC EI L        N  +   A+C L
Sbjct: 407 DQRSDTGRIYIAFVDHMNEYSP-FNLDTIYSSNLCLEIALPTREFEQYNDENGRVALCTL 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S NL A       D  ++       V  LD +++   +   +A+K+   +R +G+G++ 
Sbjct: 466 ASFNLTAF-----EDPTEMEDVAFVLVSALDMLLEYQDYPAIQARKAVEDYRPLGVGIVN 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L      Y SP  +E+ D  M  + F+ + AS  LA + GA    +G++   G   
Sbjct: 521 VAHFLAKNFTGYGSPAGLEMLDAWMAHLHFYLVKASNRLAMKFGACK--RGTIHGMGQVT 578

Query: 723 ID----SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            D     + +L   +    M        D+LK  +KT G+RN+  +A+APT + + +   
Sbjct: 579 ADLQPLPLDILPNGKKPEGMAYGLDW--DDLKDDLKTYGIRNATLLAVAPTESSSQVLNA 636

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  I+P    + +K +  G +  V                                  +P
Sbjct: 637 TNGIEPPKGLVSIKGSKDGTYKQV----------------------------------VP 662

Query: 839 D--DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIY 889
           D   L  ++   +++D +  +++A+  Q+W+DQ+ S N + D    P GK    K+    
Sbjct: 663 DVETLGPLYDLKWDLDCIEYLKTAAVIQRWVDQSISTNTWYDPEKYPDGKIPRAKMMQDI 722

Query: 890 RQAWLMGLKTTYYLRSRSATSVEK 913
              ++ G KT YY  ++ A   E+
Sbjct: 723 LSFYMWGGKTLYYNTNKDAKEDEE 746


>gi|205353757|ref|YP_002227558.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273538|emb|CAR38524.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628865|gb|EGE35208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSHYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|74313246|ref|YP_311665.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|187730558|ref|YP_001881573.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|73856723|gb|AAZ89430.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Shigella
           sonnei Ss046]
 gi|187427550|gb|ACD06824.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
 gi|320173469|gb|EFW48668.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
 gi|323167151|gb|EFZ52869.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +N +SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   +
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPT 562

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
           R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI    +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|284922617|emb|CBG35705.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 042]
          Length = 714

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 309/680 (45%), Gaps = 76/680 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TA+R L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAMRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W  L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWARLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 637

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                   A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 638 --------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 689

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 690 TLYYIRLRQ-MALEGTEIEG 708


>gi|322614369|gb|EFY11300.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621566|gb|EFY18419.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624427|gb|EFY21260.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626625|gb|EFY23430.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633515|gb|EFY30257.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638442|gb|EFY35140.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639745|gb|EFY36429.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643791|gb|EFY40341.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649477|gb|EFY45911.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655933|gb|EFY52233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661328|gb|EFY57553.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662526|gb|EFY58734.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666900|gb|EFY63075.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671270|gb|EFY67393.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677723|gb|EFY73786.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681450|gb|EFY77480.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683849|gb|EFY79859.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193762|gb|EFZ78965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197450|gb|EFZ82587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203265|gb|EFZ88294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205211|gb|EFZ90186.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212776|gb|EFZ97587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218082|gb|EGA02794.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221655|gb|EGA06068.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323230845|gb|EGA14963.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234804|gb|EGA18890.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238843|gb|EGA22893.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241543|gb|EGA25574.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248310|gb|EGA32246.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252924|gb|EGA36758.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256954|gb|EGA40663.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260571|gb|EGA44182.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264371|gb|EGA47877.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269505|gb|EGA52958.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 705

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|253990648|ref|YP_003042004.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782098|emb|CAQ85262.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid
           reductase r1 subunit) [Photorhabdus asymbiotica]
          Length = 709

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 183/677 (27%), Positives = 305/677 (45%), Gaps = 82/677 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F+ +LG    Y  Y L    N   +E  +     VA+ LA  
Sbjct: 76  DFAFIKKLFQQAYSKKFRFQTFLGAFKYYTSYSLKTFDNKRYLERYEDRVCMVALTLA-- 133

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
               +  A    + + S  F  +TPT  N G +   +L SCFL  + D++  I  ++   
Sbjct: 134 -QGNQTLACRLVDEIISGRFQPATPTFLNCGRKQRGELVSCFLLRIEDNMESIGRSINSA 192

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G R+GA   
Sbjct: 193 LQLSKRGGGVACLLSNLREAGAPIKMIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAV 252

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP ++  +
Sbjct: 253 YLNAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDIQRV 312

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I  E Y    +   I+   KI+A   +  +  + FE+G+P+I ++D  N  
Sbjct: 313 YGVPMSEISIT-EKYAEMVNNQHIRK-SKINAREFFLTLAEIQFESGYPYIMYEDTVNRV 370

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS+SE           +   CNLGS+N+ AH      D 
Sbjct: 371 NPIK--GRINMSNLCSEILQVNSASEYADDLSYRYIGKDISCNLGSMNI-AH----TMDS 423

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A +I TA+R L  V D+ +  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 424 PNFALSIETAIRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYLARERIYYGSE 483

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVF----------PIDSI 726
           E ++  +     +++HA+  S ++A ER  Y   FK S +  G F          P    
Sbjct: 484 EGIDFTNIYFYIVAYHALRTSNQIAIERNCYFKGFKDSRYASGEFFNKYTERSWQP--QT 541

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + ++ ++  +   ++  W ELK  V T G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 542 QKVCQLFEQAGIVIPNQQDWLELKASVITHGIYNQNLQAVPPTGSISYINNSTSSIHP-- 599

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLK 842
                              +V+ ++ R              DG +G +      + +D  
Sbjct: 600 -------------------IVSRIEIRK-------------DGKLGRVYYPAPFMTNDNL 627

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
           + +  A+EI P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT Y
Sbjct: 628 EYYKDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKGIKTLY 687

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 688 YIRLRQ-IALEGTEVQG 703


>gi|300906828|ref|ZP_07124509.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301306008|ref|ZP_07212088.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300401429|gb|EFJ84967.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300838719|gb|EFK66479.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315254451|gb|EFU34419.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 701

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 314/681 (46%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 63  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 118

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 119 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 178 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 238 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 297

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 298 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +N +SE               CNLGS+N +A
Sbjct: 354 MYEDTVNRANPI--AGRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 467 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 526

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 527 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 587 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A++I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 625 ---------AYKIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-MALEGTEIEG 695


>gi|270265354|ref|ZP_06193615.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270040758|gb|EFA13861.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 693

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 189/691 (27%), Positives = 309/691 (44%), Gaps = 84/691 (12%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IE 315
           Y E+ V A+       DF  +       Y + F FE +LG    Y  Y L   +G R +E
Sbjct: 50  YYEQAVLAQY------DFSCIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLE 103

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374
             +     VA+ LA  +T   +  VE    + S  F  +TPT  N G +   +L SCFL 
Sbjct: 104 RYEDRVCMVALTLAAGDTRLAQDLVE---EMISGRFQPATPTFLNCGKQQRGELVSCFLL 160

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    T +R +GA I     +S GVIP +K+  D 
Sbjct: 161 RIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDA 220

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   
Sbjct: 221 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAK 280

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N    LFSP +V  ++ +   E  ++ E Y    D   I+  R I+A   ++ +  + F
Sbjct: 281 NNEEMYLFSPYDVEQVYGVPFSEISVS-EKYREMVDDKRIRKSR-INAREFFQVLAEIQF 338

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602
           E+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   CNL
Sbjct: 339 ESGYPYMMFEDTVNRENPI--AGRINMSNLCSEILQVNRASTYHDDLSYDRVGKDISCNL 396

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+         D       + TA+R L  V D+ +  ++    + N +  AIGLG M
Sbjct: 397 GSLNIA-----KTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQM 451

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                L    I Y S E ++  +     +++HAI AS  LA ERG A+  F+ S +  G 
Sbjct: 452 NLHGYLARERIFYGSEEGIDFTNIYFYTVAYHAIRASNRLAIERGSAFEGFEHSTYASGD 511

Query: 721 FPI-----DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +       + +     VR   A   +    R  W  L++ V   G+ N N  A+ PT +I
Sbjct: 512 YFTKYTEREWLPRTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSI 571

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   + SI P                     +V+ ++ R              +G IG
Sbjct: 572 SYINNSTSSIHP---------------------IVSRIEIR-------------KEGKIG 597

Query: 833 NI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
            +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 598 RVYYPAPYMTNDNLEYYQDAYDIGPEKIIDTYAAAGQHVDQGLSLTLFFRDTATTRDINR 657

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               AW  G+KT YY+R R   ++E + ++G
Sbjct: 658 AQIYAWRQGIKTIYYIRLRQ-MALEGTEVQG 687


>gi|320087213|emb|CBY96979.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 705

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 642 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 699


>gi|319407581|emb|CBI81231.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           1-1C]
          Length = 716

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 192/676 (28%), Positives = 300/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317
           IEE    R L E + DF  V       Y   F F  +LG    Y  Y L   +G R    
Sbjct: 69  IEEKYYERELFE-LYDFSFVKKLFKRAYAFRFRFPTFLGAFKYYTSYTLKTFDGKR--YL 125

Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
           + +  RV + +AL   +  K   E   + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 126 ERYEDRVCL-VALYLAQGNKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D  
Sbjct: 185 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFS     D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601
           FE+G+P+I F+D  N  +P    G +  SNLCTEI   S + E               CN
Sbjct: 361 FESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGNDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         + D    T+  AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIA-----KAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y +PEA++  +     +++HA+ AS  +A+ER   +  F+ S +  G
Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYANG 533

Query: 720 VFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTAT 771
            F I  I    + + EL     +R    +P    W ELK+ V   G+ N    A+ PT +
Sbjct: 534 HFFIKYIEKEWKPQFELVQELFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINYATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N         + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------EFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSLYYVRLR 699


>gi|261225972|ref|ZP_05940253.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256770|ref|ZP_05949303.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK966]
          Length = 713

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 169/591 (28%), Positives = 275/591 (46%), Gaps = 68/591 (11%)

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA
Sbjct: 159 ATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGA 218

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 219 PIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADE 278

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADR 531
           + R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +  +   
Sbjct: 279 KIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQHYDELVA 335

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TL 590
            E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC+EI  +
Sbjct: 336 DERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--AGRINMSNLCSEILQV 393

Query: 591 NSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           NS+SE               CNLGS+N +AH      D    A T+ TAVR L  V D+ 
Sbjct: 394 NSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLTAVSDMS 448

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++HA+  S
Sbjct: 449 HIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTS 508

Query: 699 VELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDEL 749
           + LA+ERG  ++ FK S +  G +    +        G + E+     +   +R  W +L
Sbjct: 509 MLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGITLPTREMWAQL 568

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G       F+ N
Sbjct: 569 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN 628

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E       + A+  D                        A+EI    +I++ +   + +D
Sbjct: 629 E-------NLALYQD------------------------AYEIGAEKIIDTYAEATRHVD 657

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           Q  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 658 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 707


>gi|200387421|ref|ZP_03214033.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604519|gb|EDZ03064.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 714

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRT--- 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A +     
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGIMLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|255535949|ref|YP_003096320.1| ribonucleotide-diphosphate reductase subunit alpha
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342145|gb|ACU08258.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 551

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 176/597 (29%), Positives = 271/597 (45%), Gaps = 116/597 (19%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A K   K +    F  +++      S+P   N GT+     SCF   VPD + GI   L 
Sbjct: 40  AAKRLYKPELQPAFEEMITKGWISFSSPVWANMGTQRGLPISCFNVHVPDHIEGITHKLG 99

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  M  K  GG    +  +R  G  +   NGKS G + F+K+ +     V+QGG R+GA 
Sbjct: 100 EVIMQTKIGGGTSGYFGELRNRGTAVT-DNGKSSGAVSFMKLYDTAMDVVSQGGVRRGAF 158

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            AYL+  H D+EEFL ++    D      ++ T   +PD +M+                 
Sbjct: 159 AAYLDIDHGDIEEFLSIK----DIGSPIQNLFTGICVPDYWMQ----------------- 197

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D+ D                   G++   RKI     W ++L    + G P+I F D  N
Sbjct: 198 DMID-------------------GDMDK-RKI-----WARVLESRQQKGLPYILFSDNVN 232

Query: 569 IRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
              PQ  + +G+ +++SNLC+EI L S++EE+ +C L S+NL        +D  K  + +
Sbjct: 233 RNKPQVYKDLGMTINASNLCSEIMLPSNAEESFICCLSSMNL------ELYDEWKDTNAV 286

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYAS 676
           + A+  LD V+      IEK + + +          HRA+GLG++G+ S L    IP+ S
Sbjct: 287 KLAIYFLDAVLS---EFIEKTEGNYYLTGARNFALRHRALGLGVLGYHSYLQKNMIPFES 343

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA +    +   I   +++AS ELA   G     KG                       
Sbjct: 344 FEATQFNARAFRQIKEQSLAASQELANIYGEPELLKG----------------------- 380

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795
                               GMRN+  MAIAPT + + I G  S  I+P   N Y     
Sbjct: 381 -------------------YGMRNTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLA 421

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F   N +L   L+++ L +E     +  + GS+ ++  + ++ K +  T  EI PM 
Sbjct: 422 KGNFMRKNKYLAKLLQEKGLDNEETWRTIMLNHGSVQHLNELTEEEKAVFKTFREISPME 481

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +I  A++RQ++IDQAQSLNL +  PS    K ++++Y +AW  G+KT YY RS S +
Sbjct: 482 IISQAAQRQQYIDQAQSLNLQI--PSTMPVKDVNYLYIEAWKKGVKTLYYQRSSSVS 536


>gi|227515315|ref|ZP_03945364.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227086329|gb|EEI21641.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|299783627|gb|ADJ41625.1| Ribonucleoside-diphosphate reductase [Lactobacillus fermentum CECT
           5716]
          Length = 721

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 185/661 (27%), Positives = 301/661 (45%), Gaps = 94/661 (14%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F+ ++G    Y +Y +  N  +  +       VA  L L   +++  A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYAQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522
             D++ R   ++    +PD + + +  NA   LFSP +V        +E +  +      
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + Y+R      IK    ISA  L +K+  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379

Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI       TL S  S ET      CNLGS N+     +N          +  AVR
Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L NV D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     
Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744
           ++++++ AS ++A+ERG  ++ FK S +  G +  D +     ++ E   NR +     L
Sbjct: 495 LNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W  LK+ V+T G+ + N +A+AP  +I+ +   S S+ P                
Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +   ++QR    E  +  L Y    + N E +P      +  A+++D   +I++ 
Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904
           +  QK +DQ  SL L++              D+P  + + L+ +   AW  G+K+ YY+R
Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702

Query: 905 S 905
           +
Sbjct: 703 T 703


>gi|209920119|ref|YP_002294203.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|293448993|ref|ZP_06663414.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|331678653|ref|ZP_08379327.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|209913378|dbj|BAG78452.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|291322083|gb|EFE61512.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|324120034|gb|EGC13911.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331073483|gb|EGI44804.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
          Length = 714

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 388 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 502

Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741
           +HA+  S+ LA+ERG  ++ FK S +          QG +   +   + E+     +   
Sbjct: 503 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE       + A+  D                        A+EI    +I++ 
Sbjct: 622 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 708


>gi|184156150|ref|YP_001844490.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|183227494|dbj|BAG28010.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 721

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 185/661 (27%), Positives = 301/661 (45%), Gaps = 94/661 (14%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F+ ++G    Y +Y +  N  +  +       VA  L L   +++  A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYAQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522
             D++ R   ++    +PD + + +  NA   LFSP +V        +E +  +      
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + Y+R      IK    ISA  L +K+  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379

Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI       TL S  S ET      CNLGS N+     +N          +  AVR
Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L NV D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     
Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744
           ++++++ AS ++A+ERG  ++ FK S +  G +  D +     ++ E   NR +     L
Sbjct: 495 LNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W  LK+ V+T G+ + N +A+AP  +I+ +   S S+ P                
Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +   ++QR    E  +  L Y    + N E +P      +  A+++D   +I++ 
Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904
           +  QK +DQ  SL L++              D+P  + + L+ +   AW  G+K+ YY+R
Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702

Query: 905 S 905
           +
Sbjct: 703 T 703


>gi|320198427|gb|EFW73029.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323183201|gb|EFZ68598.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
          Length = 714

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 194/682 (28%), Positives = 315/682 (46%), Gaps = 80/682 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YGK F +IA  E+Y+       I+  + ++A   ++++  + FE+G+P+I
Sbjct: 311 P---YDVERVYGKPFADIAISEHYDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYI 366

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
            ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 367 MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD---------Q 718
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +          Q
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQ 539

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G +   +   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 540 GNWQPKTTK-VGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + + K   +G       F+ NE       + A+  D              
Sbjct: 599 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD-------------- 637

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
                     A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 638 ----------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY+R R   ++E + ++G
Sbjct: 688 IKTLYYIRLRQ-MALEGTEIEG 708


>gi|324020304|gb|EGB89523.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
          Length = 701

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741
           +HA+  S+ LA+ERG  ++ FK S +          QG +   +   + E+     +   
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 548

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 549 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 608

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE       + A+  D                        A+EI    +I++ 
Sbjct: 609 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 637

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 638 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|146312796|ref|YP_001177870.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319672|gb|ABP61819.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Enterobacter sp. 638]
          Length = 705

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 191/659 (28%), Positives = 304/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    ++F  RV M  L L + + E  A +  + + 
Sbjct: 88  FRFQTFLGAWKYYTSYTLKTFDGKR--YLESFEDRVCMVALTLAQGD-ENLAEQLMDEML 144

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SARFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYE 523
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+  +YGK F    I+  
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFQLAKENAEMALFSP---YDIERIYGKPFGDVTISEL 321

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E  AD    K F  I+A   ++ +  + FE+G+P+I ++D  N  +P    G ++ SN
Sbjct: 322 YDELVADDRVRKKF--INARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S            +   CNLGS+N +AH      D      T+ TA+R 
Sbjct: 378 LCSEILQVNSASTYDENLDYAHTGKDISCNLGSLN-IAH----TMDSPDFGRTVETAIRG 432

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D++   ++   +  N    AIGLG M     L    I Y SPE ++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIETGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTI 492

Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP 745
           ++HA++ S+ LA+ER   ++ F+ S +  G +    +    + + E      +R    LP
Sbjct: 493 TWHALNTSMMLARERNQRFAGFEKSRYASGEYFNQYLENSWQPKTEKVRALFARAGVTLP 552

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
               W +L+  V T G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWQQLRDDVMTFGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE       + A+  D                        A+EI P  +I++ 
Sbjct: 613 YPAPFMTNE-------NLALYQD------------------------AYEIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   K +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 642 AEATKHVDQGLSLTLFFPDTATTRDINKAQIHAWKKGIKTLYYIRLRQ-LALEGTEIEG 699


>gi|262043917|ref|ZP_06017005.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038771|gb|EEW39954.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 701

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++  E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 120 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 176

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 177 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 236

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 237 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 296

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 297 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  SP    G V  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 354 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D      TI TAVR L  V D+ +  ++      N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S++LA+ERG  ++ F+ S +  G +    + 
Sbjct: 467 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 526

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  V   G+ N    A+ PT +I+ I   +
Sbjct: 527 EEWQPKTERVRTLFARAGISLPDRERWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 586

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 587 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 616

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 617 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 675

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 676 KTLYYIRLRQ-LALEGTEIEG 695


>gi|238784827|ref|ZP_04628828.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238714243|gb|EEQ06254.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 693

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 187/679 (27%), Positives = 303/679 (44%), Gaps = 86/679 (12%)

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
             +  +  VE    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++   
Sbjct: 120 NPQLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    +    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNSEDMYLFSPYDVEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+   KI A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS +E           +   CNLGS+N+ AH      D 
Sbjct: 355 NPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNI-AH----TMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG--------- 727
           EA++  +     + +HAI AS  LA ERG  +  F  S +  G +    I          
Sbjct: 468 EALDFTNIYFYTVVYHAIRASNLLAIERGCHFKGFDESAYASGSYFTKYIAQRWQPKTAK 527

Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              L A+V     +    +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 528 VEALFADV----GITIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP 583

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDD 840
                                +V+ ++ R              +G IG +      + +D
Sbjct: 584 ---------------------IVSPIEIRK-------------EGKIGRVYYPAPYMTND 609

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
             + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 610 NLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKRGIKT 669

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + ++G
Sbjct: 670 IYYIRLRQ-MALEGTEVEG 687


>gi|207744361|ref|YP_002260753.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
 gi|206595766|emb|CAQ62693.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
          Length = 222

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 121/150 (80%), Gaps = 2/150 (1%)

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+R
Sbjct: 18  GVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDR 77

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL G
Sbjct: 78  IPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRG 137

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           LKTTYYLR+  AT VEKST+    G LNAV
Sbjct: 138 LKTTYYLRTIGATHVEKSTVS--RGTLNAV 165


>gi|330013347|ref|ZP_08307618.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328533535|gb|EGF60258.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 701

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 180/623 (28%), Positives = 285/623 (45%), Gaps = 75/623 (12%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++  E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 120 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 176

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 177 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 236

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 237 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 296

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 297 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 353

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  SP    G V  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 354 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 410

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D      TI TAVR L  V D+ +  ++      N    AIGLG M     L 
Sbjct: 411 H----TMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 466

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S++LA+ERG  ++ F+ S +  G +  D   
Sbjct: 467 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAY-FDKY- 524

Query: 728 LLAEVRDELAMNRT----------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           L  E + +    RT           R  W +L+  V   G+ N    A+ PT +I+ I  
Sbjct: 525 LQEEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINH 584

Query: 778 VSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            + SI P    + + K   +G       F+ N                            
Sbjct: 585 ATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN---------------------------- 616

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
             D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  
Sbjct: 617 --DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKK 673

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY+R R   ++E + ++G
Sbjct: 674 GIKTLYYIRLRQ-LALEGTEIEG 695


>gi|323946353|gb|EGB42382.1| ribonucleotide reductase [Escherichia coli H120]
          Length = 701

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 306/659 (46%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + +    A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGDA-TLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F +IA  E+
Sbjct: 261 RENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEH 317

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 318 YDELVADERIRK-KYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 374

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L
Sbjct: 375 CSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH----TMDSPNFARTVETAVRGL 429

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I+
Sbjct: 430 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTIT 489

Query: 692 FHAISASVELAQERG-AYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRT 741
           +HA+  S+ LA+ERG  ++ FK S +          QG +   +   + E+     +   
Sbjct: 490 WHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTK-VGELFARSGITLP 548

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 549 TREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVY 608

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE       + A+  D                        A+EI    +I++ 
Sbjct: 609 YPAPFMTNE-------NLALYQD------------------------AYEIGAEKIIDTY 637

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 638 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTEIEG 695


>gi|172041161|ref|YP_001800875.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           urealyticum DSM 7109]
 gi|171852465|emb|CAQ05441.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 719

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 192/673 (28%), Positives = 308/673 (45%), Gaps = 81/673 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F+ +LG    Y  Y L   +G R +E  +     VA+GLA  
Sbjct: 86  DFPFIKALFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGKRYLERFEDRVCMVALGLADG 145

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           + E  K  V+   +L    F  +TPT  N G  +  +  SCFL  + D++  I  ++   
Sbjct: 146 DEEMAKSLVD--EILDG-RFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSA 202

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   
Sbjct: 203 LQLSKRGGGVALLLSNIREAGAPIKHIENQSSGIIPVMKLLEDAFSYANQLGARQGAGAV 262

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    D+
Sbjct: 263 YLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDVTFELARKNADMYLFSP---YDV 319

Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F +I+  E+Y+   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N
Sbjct: 320 ERVYGKPFADISVTEHYDEMVEDPRIRK-KKINARDFFQTLAEIQFESGYPYIMYEDTVN 378

Query: 569 IRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQF 616
             +P    G +  SNLC+EI    T ++ +E+           CNLGS+N+    A +  
Sbjct: 379 RANPI--AGRITHSNLCSEILQVSTPSAFNEDLTYETIGDDISCNLGSMNIA--MAMDSA 434

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D+ K   TI  A+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y 
Sbjct: 435 DFSK---TIEIAIRALTAVSDQTDIDSVPSIRQGNDHSHAIGLGQMNLHGYLGREHIHYG 491

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLL 729
           S EA++  +     + +  + AS ++A ERG A+  F+ S +  G F     P +     
Sbjct: 492 SEEALDFTNAYFAAVMYECLKASNKIAIERGTAFHDFENSEYASGAFFDRYDPAEFAPKT 551

Query: 730 AEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            +V++  A + +  +P    W ELK  V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 552 EKVKEIFAAS-SIEVPTTEDWAELKASVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPI 610

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K    G        + NE                       N+E   D     
Sbjct: 611 ASKIEIRKEGKIGRVYYAAPHMNNE-----------------------NLEYFED----- 642

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              A+E+    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 643 ---AYEVGFEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYV 699

Query: 904 RSR----SATSVE 912
           R R    S T VE
Sbjct: 700 RLRQTALSGTEVE 712


>gi|161529135|ref|YP_001582961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
 gi|160340436|gb|ABX13523.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
          Length = 884

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/582 (26%), Positives = 276/582 (47%), Gaps = 57/582 (9%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           +  E+++L+ S  F+ ++PT+ N+G R  QLS+CF+  + D +  I  +  + A++ K  
Sbjct: 249 KITEYFDLMVSQDFLPNSPTMMNAGGRLGQLSACFVLGMQDGMEEIMKSTSDAALIFKSG 308

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E WH 
Sbjct: 309 GGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIIEAWHP 368

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQNAGWTLFSPDEVSDLHDLYGK 516
           DVE+F+  +   G       +++   W  D +   V T +  + L SP +   +      
Sbjct: 369 DVEKFITNKTEPG--VLENFNVSVGVW-EDFWHALVNTSDGNYVLRSPRDKKPVK----- 420

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVAL--WRKMLTMLFETGHPWITFKDPCNIRS--P 572
                           EI   + I  +AL  W+        +  P + F D  N  +   
Sbjct: 421 ----------------EINAHQLIDLIALSAWK--------SAEPGLIFFDQINKYNVFA 456

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRT 627
           +     + ++N C E +L         CNLGSINL+           +FD+ +   TIR 
Sbjct: 457 KARQAPLRATNPCGEQSLYPYES----CNLGSINLVNLVKRQADGTYEFDWQRYEETIRK 512

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
             R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  E+  +  
Sbjct: 513 TTRFLDNIIDVNHYPVPEINVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYELQSKLS 572

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E ++++++  SV LA+ RG +     + + +G  P+   G   + ++      +    WD
Sbjct: 573 EALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--AGYYEKPKE------SHSYEWD 624

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L +++K  G+RN     +APT T++ I   S  ++P++  ++ K    G F   N  + 
Sbjct: 625 ALVEKIKQYGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVGRFFYTNKIVE 684

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             LK+ +L+++ +++ +  + GS+  I+ IP  ++ +  TA +I     + +    Q WI
Sbjct: 685 QVLKENNLYNDEILAKIADNYGSLKGIDEIPQWMQDVFVTAMDIHWSDHLMAQGVWQDWI 744

Query: 868 DQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
               A+++N+  D  + + +   Y  A  +GLK     R  S
Sbjct: 745 GNAIAKTINMPYD-VTAEDVKSAYLLAHEIGLKGITVYRDGS 785



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNK 88
           ++ KR+G VT+F+  KIS AI KA  A        + ++ D ++  L EQ  T       
Sbjct: 12  EIRKRSGAVTAFNKDKISNAIYKALAATSKADRGLADQLADNVVNKLVEQGFT------- 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           S     +EDIQD VE +L+ SG+  I + Y++YR ER  +R
Sbjct: 65  STRSPTVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLR 105


>gi|119960800|ref|YP_948076.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           aurescens TC1]
 gi|119947659|gb|ABM06570.1| Ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 727

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 189/660 (28%), Positives = 295/660 (44%), Gaps = 74/660 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+ LA  + +   R V+  
Sbjct: 108 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGDEDLANRLVD-- 165

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    F  +TPT  N+G  +  +L SCFL  + D++  I  A+     L+K  GG+  
Sbjct: 166 -EIIDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARAINSALQLSKRGGGVAL 224

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 225 SLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIHRF 284

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    +PD+  +   +N    LFSP    D+  +YG  F    
Sbjct: 285 LDTKRENADEKIRIKTLSLGVVVPDITFELAKKNEDMYLFSP---YDVEKVYGVPFSDIS 341

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   IK   KISA   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 342 VTEKYYEMVDDSRIKK-TKISAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKIT 398

Query: 581 SSNLCTEITLNSS--------SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   SS        S ET      CNLGS+N+         D      +I T+
Sbjct: 399 MSNLCSEILQVSSPSIYAEDLSYETVGKDISCNLGSMNIA-----KTMDSPDFGLSIETS 453

Query: 629 VRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D++  +++    + N    AIGLG M     L   H+ Y S E ++  +   
Sbjct: 454 IRALSAVSDMSYINSVPSIAQGNAQSHAIGLGQMNLHGYLAREHVHYGSEEGLDFTNIYF 513

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT 741
             + FHA+ AS  LA E G  +  F+ S +  G F       + +     VR+  A +  
Sbjct: 514 YTVLFHALRASNRLAIETGQKFGGFEKSTYASGEFFDKYTEQEWVPETERVRELFAGHHI 573

Query: 742 -SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 574 PTQDDWRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKIGRV 633

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L N+                       N+E   D        A+EI    +I++
Sbjct: 634 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKIIDT 662

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 663 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEVEG 721


>gi|313206312|ref|YP_004045489.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|312445628|gb|ADQ81983.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|315023178|gb|EFT36189.1| ribonucleotide-diphosphate reductase subunit alpha [Riemerella
           anatipestifer RA-YM]
 gi|325336243|gb|ADZ12517.1| Ribonucleotide reductase, alpha subunit [Riemerella anatipestifer
           RA-GD]
          Length = 551

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 170/569 (29%), Positives = 260/569 (45%), Gaps = 110/569 (19%)

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           S+P   N GT+     SCF   +PD + GI   + E  M  K  GG    +  +R  G  
Sbjct: 65  SSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELRHRGTA 124

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++    D  
Sbjct: 125 VT-DNGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLTIK----DIG 179

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               ++ T   +PD +M+                 D+ D                   G+
Sbjct: 180 SPIQNLFTGVCVPDYWMQ-----------------DMID-------------------GD 203

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590
           I   RKI     W K+L    + G P++ F D  N   PQ +     +V++SNLC+EI L
Sbjct: 204 IDK-RKI-----WAKVLESRQQKGLPYVFFTDNVNRNKPQVYKDKGLLVNASNLCSEIML 257

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIE 644
            S+ EE+ +C L S+NL        +D  K  + ++ A+  LD V+          + ++
Sbjct: 258 PSTQEESFICCLSSMNL------ELYDEWKDTNAVKLAIYFLDAVLSEFIEKTEGNYYLQ 311

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A+     HRA+GLG++G+ S L    IP+ S EA +    + + I   A +AS ELA  
Sbjct: 312 GARNFAMKHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFKHIKEQAEAASKELANI 371

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G     KG                                           GMRN+  M
Sbjct: 372 YGEPELLKG------------------------------------------YGMRNTTLM 389

Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           AIAPT + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E    +
Sbjct: 390 AIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLKKLLEEKGLENEETWRN 449

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG- 882
           +  + GS+ +++ + ++ K +  T  EI PM +I  A++RQ++IDQAQSLNL +  PS  
Sbjct: 450 IMLNHGSVQHLDGLTEEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQI--PSTM 507

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             K ++F+  +AW  G+KT YY RS S +
Sbjct: 508 PVKDVNFLMIEAWKKGIKTLYYQRSSSVS 536


>gi|62181311|ref|YP_217728.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62128944|gb|AAX66647.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715797|gb|EFZ07368.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 714

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENVQMALFSP---YDIQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|59859089|gb|AAX09329.1| NrdE [Corynebacterium stationis]
          Length = 720

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 183/647 (28%), Positives = 288/647 (44%), Gaps = 68/647 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ +LG    Y  Y L     R  + + F  RV+M            A    + 
Sbjct: 98  YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    
Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD
Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523
            ++   D++ R   ++    IPD+      +N    LFSP    D+  +YGK F +I+  
Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           ++  +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SN
Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392

Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS S        EE      CNLGS+N+         D      T+  A+R 
Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRG 447

Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     +
Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744
            + A+ AS ++A+ERG  +S FK S +  GVF     P +      +V+ EL  N T   
Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++        
Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N     D+L      A+E+    +I++ 
Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 657 AVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLR 703


>gi|301633424|gb|ADK86978.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           pneumoniae FH]
          Length = 721

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 166/613 (27%), Positives = 280/613 (45%), Gaps = 69/613 (11%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           RV M +         +A++    + +  F  +TPT  N+G  +  +  SC+L  + D++ 
Sbjct: 127 RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+     L+K  GG+    T +R  GA I     +S  +IP +K+  D+    NQ 
Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSDIIPIMKLLEDSFSYANQL 246

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+       N    L
Sbjct: 247 GQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMAL 306

Query: 502 FSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP    D+++ YGK   +  +    YE  A++   K F  I+A   ++ +  + FE+G+
Sbjct: 307 FSP---YDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGY 361

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSIN 606
           P+I F D  N R+   H   +  SNLC+EI   S+  E               CNLGS+N
Sbjct: 362 PYILFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLN 419

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +      + +  ++ A+  LD V  + N  T    +K N  + A+GLG M    
Sbjct: 420 IAKAMESG----PEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHG 475

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------GSLWDQG 719
            L    I Y SPEA++  +     +++HA  AS ELA E+G + +F+      GS +D+ 
Sbjct: 476 FLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKY 535

Query: 720 V-----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +     F       +  +  +  +   +R  W EL   ++  G+ NS+ +AIAPT +I+ 
Sbjct: 536 IKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISY 595

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P    + V+         V ++ +N    +D +         Y DG     
Sbjct: 596 LSSCTPSLQPVVSPVEVRKEGRLGRIYVPAYQLN----KDSYP-------FYKDG----- 639

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                        A+E+ P  +I  A+  Q+ +DQA SL L++ D+ + + L+  Y  A+
Sbjct: 640 -------------AYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAF 686

Query: 894 LMGLKTTYYLRSR 906
             G  + YY+R R
Sbjct: 687 KKGCSSIYYVRVR 699


>gi|15672957|ref|NP_267131.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723918|gb|AAK05073.1|AE006332_2 ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis Il1403]
 gi|326406519|gb|ADZ63590.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis CV56]
          Length = 722

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 199/720 (27%), Positives = 319/720 (44%), Gaps = 91/720 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288
           +E +T  +K+  +   +E      +      EE ++A  L +   +F +  L  +L K+E
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
             F   ++     Y++Y +  N   + + + F  RV M         EK A      + +
Sbjct: 91  FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +
Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524
              D++ R   ++    +PD F + V +     LF P  V      YGK F   +I  E 
Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y++     EI+    I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNL
Sbjct: 325 YDKMVANPEIRK-TSINARELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        LN       V     CNLGS N+L    ++    ++  ++I   VR L
Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----NEFGTSIEAMVRAL 437

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++
Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497

Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740
           ++ + AS +LA E+G  SSFK         GS +D+     D    ++    EL   +  
Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSSKVQELFKGIAV 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+  VKT G+ NS  MA+AP  +I+ I   S SI P                
Sbjct: 555 PTIEDWTALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +VN +++R    E  +  + Y    +   E IP      + +A++ D   +I+  
Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644

Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++    P G             + L  +   A+  G+KT YY+R+
Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|203288310|ref|YP_002223360.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
 gi|201085530|gb|ACH95103.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
          Length = 707

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 159/588 (27%), Positives = 284/588 (48%), Gaps = 62/588 (10%)

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G     +L SCFL  V D L  I   +     L+K  GG+  + + +R  G 
Sbjct: 160 ATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGE 219

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   D+
Sbjct: 220 EIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADE 279

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD F +   Q+  +   +P  V     L   + +   ++Y+  A   
Sbjct: 280 KSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFD-KDYDLLASNP 338

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588
            I + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  SNLCTEI    
Sbjct: 339 RI-IKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQ 397

Query: 589 ---TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
               + +  E   +     C LGS+N++ +  N+ F++      +  A+R L +V+D +C
Sbjct: 398 TPSVIGNYGEGDVIGYDVSCILGSLNIV-NVINSDFEF-----IVDLAMRALTSVVDKSC 451

Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +     +K+N  +RA+GLG+M     L    IPY S EA++        ++F+++ +S+
Sbjct: 452 INNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSM 511

Query: 700 ELAQERGA-YSSFKGSLWDQG----VFPIDSIGLLAEVRDEL--AMNRTSRLPWDELKKR 752
            +A+ER + +  FK S +  G    ++  +     +EV  E+   +   S+  W+ LK  
Sbjct: 512 NIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGD 571

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           ++  G+ ++  +A+APT +I+ I   + S+ P                     +V  ++ 
Sbjct: 572 IQRYGLYHAYRLAVAPTQSISYIQNATTSLMP---------------------IVEPVEA 610

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R   +      + Y          +  +      +A+ +D   LI+  S  Q+ +DQ  S
Sbjct: 611 RVYGNSTTYYPMPY----------LSRENAIFFKSAYYMDMRKLIDLVSEAQRHVDQGIS 660

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             LY+ +E S ++L  +Y  A   GLK+ YY R+++  SV++  L  +
Sbjct: 661 TLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 707


>gi|194427894|ref|ZP_03060440.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|194414127|gb|EDX30403.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
          Length = 714

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 190/681 (27%), Positives = 312/681 (45%), Gaps = 78/681 (11%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + +    A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGDA-TLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGV-VHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLA 609
           ++D  N  +P   + V ++ SNLC+EI  +NS+SE               CNLGS+N +A
Sbjct: 368 YEDTVNRANP---IAVRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IA 423

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L 
Sbjct: 424 H----TMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 479

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    + 
Sbjct: 480 REGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 539

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 540 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 599

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ NE       + A+  D               
Sbjct: 600 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD--------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 638 ---------AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 689 KTLYYIRLRQ-MALEGTEIEG 708


>gi|205357273|ref|ZP_02346446.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322676|gb|EDZ10515.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 714

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENVQMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|296128312|ref|YP_003635562.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
 gi|296020127|gb|ADG73363.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
          Length = 719

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 182/648 (28%), Positives = 296/648 (45%), Gaps = 71/648 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R    + F  RV M  LAL E +++  A+   
Sbjct: 98  YSKKFRFQTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALALAEGDQD-FAMNLV 154

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+  
Sbjct: 155 DEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 214

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 215 LLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 274

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +  
Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSPYDVERVYGVPFADVNVTE 334

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + YE   D+   K   KI+A   ++ +  + FE+G+P++ F+D  N  +P +  G +  S
Sbjct: 335 KYYEMVDDKRIRKT--KINAREFFQTLAEIQFESGYPYVMFEDTVNRANPIE--GKITHS 390

Query: 583 NLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    T ++ +E+ +         CNLGS+N+         D   L  T+ TA+R
Sbjct: 391 NLCSEILQVSTPSTFNEDLSYDHVGRDISCNLGSMNIAL-----SMDSPDLGKTVETAIR 445

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  N  ++   K++N    AIGLG M     L    I Y S E ++  +     
Sbjct: 446 ALTAVSDQTNIESVPSIKRANAGGHAIGLGQMNLHGYLARERIFYGSDEGLDFTNIYFYT 505

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++HAI AS  LAQER A +  F+ S +  G +    +          +  + DE  ++ 
Sbjct: 506 VAYHAIRASNLLAQERKASFFGFERSAYATGEYFTKYVEKEWKPRTARVQALFDEAGVHI 565

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            ++  W EL + V+  G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 566 PTQDDWRELAELVRVHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRV 625

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ N+                       N+E   D        A+EI    +I++
Sbjct: 626 YYPAPFMTND-----------------------NLEYYQD--------AYEIGFEKVIDT 654

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R
Sbjct: 655 YAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIRLR 702


>gi|218442223|ref|YP_002380552.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 7424]
 gi|218174951|gb|ACK73684.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7424]
          Length = 1123

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 235/458 (51%), Gaps = 38/458 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K++++  DG+  + N  ++  +VE AC G +DV+   + +     + +G++  +++  LI
Sbjct: 36  KIQVVKRDGSKAALNIAKIREVVEWACVG-KDVNPIALEAGLTTRLRNGITTREIQDNLI 94

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +   +EP++  V  R  +  L ++ L     +            Y  Y     ++
Sbjct: 95  NCALEMCSPEEPDWRYVAGRLHIWSLWKDTLANRGYQ------------YGNY-----DQ 137

Query: 263 GVKARLLHESMMDFDLVYLANDLK-------YERDFAFEYLGLQILYDRYFLHINGSRIE 315
            VK ++ H       LVY + +L+        + D  ++Y G  +L  RY L       E
Sbjct: 138 TVKTKIDHNQYDRRILVYSSEELQEAGTWINSDWDTDYDYAGAVLLTSRYLLPD-----E 192

Query: 316 MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +PQ   +  A+ LA  ET +   K A +FY  ++      +TP L N    +  L+SCF+
Sbjct: 193 LPQEALLTCALLLASVETPENRLKWARKFYEAIAKRQISLATPILANLRVPNGSLTSCFI 252

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           + + D+L  IF  +   A ++K  GG+G + + +R  G+ +      S GVIP++K+ ND
Sbjct: 253 SAIDDNLESIFSEVTNTAKISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILND 312

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TA+AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV
Sbjct: 313 TAIAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVMADEFMRRV 372

Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
                WTL  P E+      +L +L+G+EFE  Y   E     GEI ++++++A  L++ 
Sbjct: 373 IHKQEWTLVDPYEIRTKFGVELAELWGEEFEQVYSKIETAIHNGEITLYKRVNARELFKH 432

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++    ETG P++ FKD  N  +P +H G +   NLC 
Sbjct: 433 IMRSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 151/365 (41%), Gaps = 68/365 (18%)

Query: 572  PQQHVGVVHS--SNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            P +H+G+ +   +  CTE   N     E+  CNL S+NL    AN   D   L  T + A
Sbjct: 803  PLRHLGMFNGILTGQCTESFSNVKPGLESHCCNLVSLNL----AN--LDNSDLEDTCKIA 856

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            VR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E +       E
Sbjct: 857  VRLLDNTIDLTHPPFEAAKNHNNLYRTIGVGCMGLADWLAKRRLSY---EHLTDISHLFE 913

Query: 689  FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
             I +    +S+EL+QERGAY+ F GS W QG      IG  ++  +    N      W +
Sbjct: 914  EIGYWCTLSSMELSQERGAYACFPGSDWSQGKL----IG--SKPVEWFIENAHHPERWAK 967

Query: 749  LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +   F+  
Sbjct: 968  LAEDIQLYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPIAPPFI-- 1025

Query: 809  ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
               +   W      + K +D +           K + A A               Q+WID
Sbjct: 1026 ---KESFW---FYPENKTYDQN-----------KVVKAIAV-------------MQQWID 1055

Query: 869  QAQSLNLYLDEPSGK----------KLDFIYRQ---AWLMGLKTTYYLRSRSATSVEKST 915
               S+ L  +   G           K   IY     AW  G K  YY+R     +V+K  
Sbjct: 1056 TGISMELLFNLNQGVYFPEDPERFLKAKDIYDTLILAWREGCKAVYYIR-----TVQKDN 1110

Query: 916  LKGVD 920
             K  D
Sbjct: 1111 FKDSD 1115


>gi|152971533|ref|YP_001336642.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956382|gb|ABR78412.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 693

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++  E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 112 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 168

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 169 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 228

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 229 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 288

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 289 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 345

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  SP    G V  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 346 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 402

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D      TI TAVR L  V D++   ++      N    AIGLG M     L 
Sbjct: 403 H----TMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIGLGQMNLHGYLA 458

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S++LA+ERG  ++ F+ S +  G +    + 
Sbjct: 459 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 518

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  V   G+ N    A+ PT +I+ I   +
Sbjct: 519 EEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 578

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 579 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 608

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 609 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 667

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 668 KTLYYIRLRQ-LALEGTEIEG 687


>gi|319404591|emb|CBI78197.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 716

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 191/676 (28%), Positives = 299/676 (44%), Gaps = 74/676 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMP 317
           IEE    R L E + DF  V       Y   F F  +LG    Y  Y L   +G R    
Sbjct: 69  IEEKYYERELFE-LYDFSFVKKLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKR--YL 125

Query: 318 QAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
           + +  RV + +AL   +  K   E   + + +  F  +TPT  N+G +   +L SCFL  
Sbjct: 126 ERYEDRVCL-VALYLAQGSKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D  
Sbjct: 185 VEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N    LFS     D+  + GK F +I+  E+Y    D  +I+  +KISA   ++ +  + 
Sbjct: 305 NEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRK-KKISARVFFQTLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CN 601
           FE+G+P+I F+D  N  +P    G +  SNLCTEI   S + E               CN
Sbjct: 361 FESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGNDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         + D    T+  AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 419 LGSMNIA-----KAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y +PEA++  +     +++HA+ AS  +A+ER   +  F+ S +  G
Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYADG 533

Query: 720 VFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I    + + EL     +R    +P    W ELK+ V   G+ N    A+ PT +
Sbjct: 534 HFFTKYIEKEWKPQFELVQKLFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y    +
Sbjct: 594 ISYINYATSSIHPIASKIEIRK------------------------EGKIGRVYYPAPYM 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N         + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 630 DNTNL------EFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLRSR 906
            AW  G+K+ YY+R R
Sbjct: 684 YAWKKGIKSLYYVRLR 699


>gi|32491359|ref|NP_871613.1| ribonucleotide-diphosphate reductase subunit alpha [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166566|dbj|BAC24756.1| nrdE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 704

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 177/600 (29%), Positives = 268/600 (44%), Gaps = 67/600 (11%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           EK A+     + S  F  +TPT  N G +   +  SCFL  + D++  I  AL     L+
Sbjct: 132 EKFAINIMQEILSGRFQPATPTFLNCGKKQRGEYVSCFLLRIEDNMESIGRALNSALQLS 191

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    T +R  GA I     +S G++P +K+  D     NQ G R+GA   YL  
Sbjct: 192 KRGGGVSFLLTNLRESGAPIKCIKNQSSGIVPVMKMLEDAFSYANQLGARQGAGAVYLHA 251

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+  K   +N    LFSP    D+  +Y
Sbjct: 252 HHPDILNFLDTKRENADEKIRIKTLSLGVIIPDITFKLAKENQNMCLFSP---YDIKKVY 308

Query: 515 GKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            K F   I  + Y +  +   IK    I+A + ++K+  + FE+G+P+I F+D  N  +P
Sbjct: 309 NKPFSELIISKIYYKLINDIRIKKI-SINARSFFQKLAEVQFESGYPYIMFEDTVNKENP 367

Query: 573 QQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI  +N++SE               CNLGS+N+         D   
Sbjct: 368 I--YGKINMSNLCSEILQVNTASEYNEDLSYKKIGRDISCNLGSLNIA-----KTMDSSN 420

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           L  T+  A+R L  V DI   +++    K N    +IGLG M     L   +I Y SPEA
Sbjct: 421 LGKTVEVAIRCLTAVSDITKINSVSSVVKGNKKSHSIGLGQMNLHGYLARENIFYGSPEA 480

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL----AEVRD 734
           +E  +     I++HAI  S  LA ER   +S F  S +  G F            ++   
Sbjct: 481 IEFTNFYFYVITYHAIRTSNLLAIERKKTFSGFSRSKYANGKFFKKYTKKTWIPKSDRIL 540

Query: 735 ELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            L  N    LP    W  L+  V   G+ N N  AI PT +I+ I   + SI P      
Sbjct: 541 NLFNNNNIHLPTLKEWKILENSVMKYGLYNQNLQAIPPTGSISYINYSTSSIHP------ 594

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                          +V+ ++ R    E  I  + Y    + N           +  A+E
Sbjct: 595 ---------------VVSRIEIR---KEGKIGRVYYPAPYMTNKNLC------YYQDAYE 630

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I P  +I++ +   K +DQ  SL L+  D+ + + ++     AW  G+KT YY+R R  T
Sbjct: 631 IGPKKIIDTYAAATKHVDQGLSLTLFFRDDATTRDINKAQIYAWKKGIKTLYYVRIRQLT 690


>gi|238896130|ref|YP_002920866.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548448|dbj|BAH64799.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 713

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 178/621 (28%), Positives = 285/621 (45%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++  E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 132 VALTLARGDEQQARQLTE--EILSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 249 ARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  SP    G V  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 366 MFEDTVNRASPV--AGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDISCNLGSLN-IA 422

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D      TI TAVR L  V D++   ++      N    AIGLG M     L 
Sbjct: 423 H----TMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S++LA+ERG  ++ F+ S +  G +    + 
Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRYASGAYFDKYLQ 538

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  V   G+ N    A+ PT +I+ I   +
Sbjct: 539 EEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 629 DNL-ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707


>gi|227542804|ref|ZP_03972853.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181430|gb|EEI62402.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 718

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 306/674 (45%), Gaps = 76/674 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           +F+ +    D  Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 85  NFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVALTLAAG 144

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           + +  +  V+   L     F  +TPT  NSG +   +  SCFL  + D++  I  A+   
Sbjct: 145 DEDLARNLVDEIIL---GRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRAINSA 201

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 202 LQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 261

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+ +FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDV 318

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YGK F    I+   YE   D    K   KI+A   ++ +  + FE+G+P+I ++D  
Sbjct: 319 ERVYGKAFADVSISEHYYEMVEDPRIHKT--KINARHFFQTLAEIQFESGYPYIMYEDTV 376

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P +  G V  SNLC+EI  + + SE           E   CNLGS+N+     +  
Sbjct: 377 NRANPIE--GRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAMDSTD 434

Query: 616 FDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           F     A+TI TA+R L  V +  +  ++   KK N    AIGLG M     L   HI Y
Sbjct: 435 F-----ATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHY 489

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---S 725
            S EA++  +     + +  + AS ++A+ERG  ++ F  S +  G F     P +    
Sbjct: 490 GSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPK 549

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  + D   ++  +   W ELK+ V   G+ N    A+ PT +I+ I   + SI P 
Sbjct: 550 TDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPI 609

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + ++                         E  I  + Y    + N     D+L+   
Sbjct: 610 ASRIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFQ 640

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+EI    +I++ +   K++DQ  SL L+  D  S + ++     AW  G+KT YY+R
Sbjct: 641 -DAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699

Query: 905 SRSATSVEKSTLKG 918
            R   ++E + ++G
Sbjct: 700 LRQ-VALEGTEVEG 712


>gi|282599613|ref|ZP_06257324.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282568716|gb|EFB74251.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 710

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 298/660 (45%), Gaps = 72/660 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G R    + +  RV M  L L +  K   ++   
Sbjct: 89  YAHKFRFKTFLGAFKYYTSYTLKTFDGQR--YLERYEDRVCMVALTLAQGSKSLASLLVD 146

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            ++S   F  +TPT  N G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 147 EIISG-RFQPATPTFLNCGKKQRGELISCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 205

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 206 LMTNLREQGAPIKHIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRF 265

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +    N    LFSP +V   + +   E  ++ 
Sbjct: 266 LDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNEDMYLFSPYDVQREYGVAMSEISVS- 324

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    +   IK F KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ S
Sbjct: 325 EKYHEMVNNKAIKKF-KINAREFFQTIAEIQFESGYPYILFEDTANRENPI--AGRINMS 381

Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI  +N  S            +   CNLGS+N+ +       D    A +I TAVR
Sbjct: 382 NLCSEILQVNQPSTYEDDLNYKTVGKDISCNLGSMNIAS-----TMDSPDFALSIETAVR 436

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D++  +++    + N    AIGLG M     L   HI Y S + ++  +     
Sbjct: 437 ALTAVSDMSYINSVPSIAQGNQQSHAIGLGQMNLHGYLAREHIYYGSEQGLDFTNIYFYT 496

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL----AEVRDELAMNRTSRL 744
           ++++A+  S +LA ER   +  F  S +  G +    I  +     +   EL      ++
Sbjct: 497 VAYYALKTSNQLAIERQQTFDGFSASKYASGEYFDKYINKIWSPKTQTVQELFRRSGIKI 556

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W  LK+ V T G+ N N  AI PT +I+ I   + SI P    + + K    G  
Sbjct: 557 PTQADWLALKQSVMTYGIYNQNLQAIPPTGSISYINNSTSSIHPVVAPIEIRKEGKIGRV 616

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ NE             +LK++                    A++I P  +I++
Sbjct: 617 YYPAPFMTNE-------------NLKFYQ------------------DAYQIGPEKIIDT 645

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+ D + + + ++     AW  G+KT YY+R R  T++E + ++G
Sbjct: 646 YAEATQHVDQGLSLTLFFDGDATTRDINRAQIYAWRKGIKTLYYIRLRQ-TALEGTEVEG 704


>gi|300780545|ref|ZP_07090400.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
 gi|300533531|gb|EFK54591.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
          Length = 720

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 184/675 (27%), Positives = 301/675 (44%), Gaps = 77/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           D+D V       Y   F F+ +LG    Y  Y L     R  + + F  RVAM       
Sbjct: 86  DWDFVKSTFKRAYAFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVAMTALFLAD 144

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             E+ A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  
Sbjct: 145 GNEEIASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQ 204

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 205 LSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 264

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  
Sbjct: 265 NAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVER 321

Query: 513 LYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YG  F +I+  E Y+   +   I+   KI A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 322 VYGVPFADISVTEKYDEMVEDPRIRK-TKIKARQFFQTIAEIQFESGYPYILFEDHANRA 380

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS+S                CNLGS+N+         D 
Sbjct: 381 NPVK-TGRINMSNLCSEILQVNSASVLNEDLTYDTIGHDISCNLGSLNIAM-----AMDS 434

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           D  + T+ TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S 
Sbjct: 435 DNFSRTVETAIRGLTAVADKTSIDSVPSVREGNDASHAIGLGQMNLHGYLGREHIEYGSE 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID---SIGL 728
           E ++  +     I +  + AS ++A E+G  ++ F+ S +  G F     P D       
Sbjct: 495 EGLDFTNAYFATIMYECLKASHKIAVEKGQRFAGFEDSEYASGEFFDRYNPADFQPKTQR 554

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D  +    S   W++LK  V   G+ N    A+ PT +I+ I   + SI P    
Sbjct: 555 VKELFDGSSAQPPSAEEWEQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIASK 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-- 846
           + ++                                   +G IG +      +   +A  
Sbjct: 615 IEIRK----------------------------------EGKIGRVYYPAPHMDNENAGY 640

Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 641 FKDAYEIGFEKIIDTYAEATKYVDQGLSLTLFFKDTVTTRDINRAQIYAWRKGIKTLYYI 700

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 701 RLRQ-MALEGTEVEG 714


>gi|238796651|ref|ZP_04640157.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238719382|gb|EEQ11192.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 693

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 183/675 (27%), Positives = 304/675 (45%), Gaps = 78/675 (11%)

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
             +  +  VE    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++   
Sbjct: 120 NPQLARELVE---EIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+   KI A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +NS +E           +   CNLGS+N+ AH      D 
Sbjct: 355 NPIK--GRINMSNLCSEILQVNSPTEYNDDLSYRQIGKDISCNLGSLNI-AH----TMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ +  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GL 728
           EA++  +     +++HAI AS  LA ERG  +  F  S +  G +    +          
Sbjct: 468 EALDFTNIYFYTVAYHAIRASNLLAIERGCHFKGFDESTYASGSYFTKYVEQRWQPKTAK 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  ++   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VQALFADAGIHIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP---- 583

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI 844
                            +V+ ++ R              +G IG +      + +D  + 
Sbjct: 584 -----------------IVSPIEIRK-------------EGKIGRVYYPAPYMTNDNLEY 613

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 614 YQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKRGIKTIYYI 673

Query: 904 RSRSATSVEKSTLKG 918
           R R   ++E + ++G
Sbjct: 674 RLRQ-MALEGTEVEG 687


>gi|229493417|ref|ZP_04387206.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
 gi|229319733|gb|EEN85565.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
          Length = 727

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 186/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           D  Y + F F  +LG    Y  Y L   +G R    + F  RV M         E  AVE
Sbjct: 103 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLAAGNEDLAVE 160

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+
Sbjct: 161 LVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGV 220

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 221 ALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIY 280

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +
Sbjct: 281 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINV 340

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           + + YE   D+   K   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 341 SEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMFEDTVNRANPIE--GKIT 396

Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S+              +   CNLGS+N+         D    A TI  +
Sbjct: 397 HSNLCSEILQVSTPSLFNDDLSYSKVGKDISCNLGSLNIA-----KTMDSPDFAKTIEVS 451

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  + +++   ++ N+   AIGLG M     L    I Y S E ++  +   
Sbjct: 452 IRGLTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYF 511

Query: 688 EFISFHAISASVELAQERGAYSSFKG---SLWDQGVF-----------PIDSI-GLLAEV 732
             + FHA+ AS ++A ERG+Y  FKG   S +  G F             D + GL A+ 
Sbjct: 512 YTVLFHALRASNKIAIERGSY--FKGFPESKYASGEFFDKYTDQAWEPATDKVRGLFADA 569

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV- 791
           +    ++  ++  W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + 
Sbjct: 570 K----LHIPTQDDWRELKASVQKHGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIR 625

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K    G       +L N+                       N+E   D        A+EI
Sbjct: 626 KEGKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEI 654

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               ++++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 655 GYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MA 713

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 714 LEGTEVEG 721


>gi|327394923|dbj|BAK12345.1| ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [Pantoea
           ananatis AJ13355]
          Length = 693

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 185/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF+ V   +D      FAF+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 60  DFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMVALTLAQG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +    +  +E    + S  F  +TPT  NSG +   +L SCFL  + D++  I  A+   
Sbjct: 120 DEPLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESIGRAVNSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 237 WLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFSP---YDV 293

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YG+ F    I+ +  E  AD    K +  I     ++ +  + FE+G+P+I ++D  
Sbjct: 294 ERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 351

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P    G ++ SNLC+EI  +NS+SE           +   CNLGS+N +AH     
Sbjct: 352 NRDNP--IAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLN-IAH----A 404

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   LA T+ TA+R L  V D+ +  ++    + N    AIGLG M     L    I Y
Sbjct: 405 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAY 464

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726
            SPEA++  +     ++++A+ AS +LA+ER   +  F  S +  G +    +       
Sbjct: 465 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 524

Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +A +  +  ++      W  L++ V   G+ N N  AI PT +I+ I   + SI P 
Sbjct: 525 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 584

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K   +G       F+ N+                       N+E        +
Sbjct: 585 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLE--------L 613

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 614 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 673

Query: 904 RSR 906
           R R
Sbjct: 674 RLR 676


>gi|238790128|ref|ZP_04633905.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238721797|gb|EEQ13460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 693

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 193/688 (28%), Positives = 312/688 (45%), Gaps = 75/688 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   +F  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  VEEGYYEKEVLERY-NFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTT 375
            +     VA+ LA    +  +  VE    ++S  F  +TPT  N G  +  +L SCFL  
Sbjct: 105 YEDRVCMVALTLAAGNPQVARDLVE---EMTSGRFQPATPTFLNCGKNQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 162 MEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEEMYLFSPYDVELVYGVPMSEISIS-EKYREMVDDKRIRK-SKIKAREFFQILAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +NS +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNSPTEYNDDLSYHHIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+ AH      D      +I TA+R L  V D+ N  ++   +K N    AIGLG M 
Sbjct: 398 SLNI-AH----TMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721
               L    I Y S EA++  +     + +HAI AS  LA ERG+ +  F  S +  G +
Sbjct: 453 LHGYLARERIFYGSEEALDFTNIYFYTVVYHAIRASNLLAIERGSHFKGFDESDYASGRY 512

Query: 722 PIDSIGL-----LAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772
               +        A+V+   A +  + +P    W++L+  V   G+ N N  AI PT +I
Sbjct: 513 FTKYVEQSWQPKTAKVQALFAKSGIA-IPNQQDWEKLRNSVMEHGIYNQNLQAIPPTGSI 571

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + + K    G       ++ NE                      
Sbjct: 572 SYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTNE---------------------- 609

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N+E   D        A++I P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 610 -NLEYYQD--------AYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQI 660

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            AW  G+KT YY+R R   ++E + ++G
Sbjct: 661 YAWQKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|227488206|ref|ZP_03918522.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091776|gb|EEI27088.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 718

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 190/674 (28%), Positives = 305/674 (45%), Gaps = 76/674 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           +F+ +    D  Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 85  NFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVALTLAAG 144

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +   E  A    + +    F  +TPT  NSG +   +  SCFL  + D++  I  A+   
Sbjct: 145 D---ENLARNLVDEIILGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRAINSA 201

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   
Sbjct: 202 LQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAV 261

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+ +FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 262 YLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP---YDV 318

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YGK F    I+   YE   D    K   KI+A   ++ +  + FE+G+P+I ++D  
Sbjct: 319 ERVYGKAFADVSISEHYYEMVEDPRIHKT--KINARHFFQTLAEIQFESGYPYIMYEDTV 376

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P +  G V  SNLC+EI  + + SE           E   CNLGS+N+     +  
Sbjct: 377 NRANPIE--GRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAMDSTD 434

Query: 616 FDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           F     A+TI TA+R L  V +  +  ++   KK N    AIGLG M     L   HI Y
Sbjct: 435 F-----ATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHY 489

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---S 725
            S EA++  +     + +  + AS ++A+ERG  ++ F  S +  G F     P +    
Sbjct: 490 GSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPK 549

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  + D   ++  +   W ELK+ V   G+ N    A+ PT +I+ I   + SI P 
Sbjct: 550 TDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPI 609

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + ++                         E  I  + Y    + N     D+L+   
Sbjct: 610 ASRIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFQ 640

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+EI    +I++ +   K++DQ  SL L+  D  S + ++     AW  G+KT YY+R
Sbjct: 641 -DAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699

Query: 905 SRSATSVEKSTLKG 918
            R   ++E + ++G
Sbjct: 700 LRQ-VALEGTEVEG 712


>gi|119872039|ref|YP_930046.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
 gi|119673447|gb|ABL87703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
          Length = 844

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 199/775 (25%), Positives = 350/775 (45%), Gaps = 104/775 (13%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P  A+V    LL ++ +EV    + K  K+ + E          RY +      L  ES+
Sbjct: 67  PELAEVAKSHLLGRIYKEVFGKDFLK-HKSGYLERA------LARYRQLAEAGLLKEESL 119

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRVAMGLALK 331
              +    A + + + D +  Y  L++  +  Y L     R+ E P     RVA  +A +
Sbjct: 120 RLLE----AFEPRPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRVATAVA-R 174

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGI 383
           + E  +R   +Y+ ++S   + ++P  FN+ T+    +SCF   V D L        + I
Sbjct: 175 DVETARR---YYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLSHPGRFCI 231

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ +     + QGGK
Sbjct: 232 YDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVEVIKQGGK 291

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWT 500
           R+GA    L  WH DV +F+  +     D     + N + ++ D FM++   + ++  + 
Sbjct: 292 RRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGLDKDPKYP 350

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW-------RKMLTML 553
           L +P               I  E   R+    E +V     AVA W       R++    
Sbjct: 351 LVNP--------------RIYLERTGRKPVE-ETRVSPPQEAVAGWVDARELFREIAEGA 395

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +++G P + +KD  N  +P           +   +  + N C+E   N       VCNL 
Sbjct: 396 WDSGDPGVIYKDNLNASNPLLGEEIEVAGHRFRYIWRAVNPCSETHQNPFE----VCNLT 451

Query: 604 SINLLA---HFANNQF-------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            INL+      A   F       D++ LA   R   R LD+ ID +   IE   + N   
Sbjct: 452 HINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRAT 511

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA+ERG +  F+ 
Sbjct: 512 RKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWIYVNALDESAELARERGPFKFFEK 571

Query: 714 SLWDQGVFPI----DSI---------GLLAEVRD------ELAMNRTS--RLPWDELKKR 752
           S + +G  P+    D +             E+R+      E+ M      R   + L+++
Sbjct: 572 SAYARGEIPVLKFQDYVWGRWERVKGAFPPELREAGDRLREITMRTREWLRPRLEALREK 631

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+RNS  ++IAPT   + + G +  ++P +   ++++   G         V  L+ 
Sbjct: 632 VKG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRA 690

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870
           R LW   +   ++   G + +   +P+++K + ATA EI  +W +   +  Q+W+DQ  +
Sbjct: 691 RGLWTPQVRKTVE-ETGMLKDAP-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQGIS 748

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
           +++N+  + P  + + + +  AW +G+K  T Y  +S+S   +     + +  KL
Sbjct: 749 KTINMPANAPK-EDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKL 802


>gi|291618544|ref|YP_003521286.1| NrdE [Pantoea ananatis LMG 20103]
 gi|291153574|gb|ADD78158.1| NrdE [Pantoea ananatis LMG 20103]
          Length = 712

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 185/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF+ V   +D      FAF+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 79  DFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMVALTLAQG 138

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +    +  +E    + S  F  +TPT  NSG +   +L SCFL  + D++  I  A+   
Sbjct: 139 DETLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 256 WLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFSP---YDV 312

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YG+ F    I+ +  E  AD    K +  I     ++ +  + FE+G+P+I ++D  
Sbjct: 313 ERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P    G ++ SNLC+EI  +NS+SE           +   CNLGS+N +AH     
Sbjct: 371 NRDNPI--AGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLN-IAH----A 423

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   LA T+ TA+R L  V D+ +  ++    + N    AIGLG M     L    I Y
Sbjct: 424 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGITY 483

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726
            SPEA++  +     ++++A+ AS +LA+ER   +  F  S +  G +    +       
Sbjct: 484 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 543

Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +A +  +  ++      W  L++ V   G+ N N  AI PT +I+ I   + SI P 
Sbjct: 544 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 603

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K   +G       F+ N+                       N+E        +
Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLE--------L 632

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 633 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692

Query: 904 RSR 906
           R R
Sbjct: 693 RLR 695


>gi|3077613|emb|CAA70765.1| ribonucleotide reductase subunit R1E [Corynebacterium ammoniagenes]
          Length = 720

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 183/647 (28%), Positives = 288/647 (44%), Gaps = 68/647 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ +LG    Y  Y L     R  + + F  RV+M            A    + 
Sbjct: 98  YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 156

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    
Sbjct: 157 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 216

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD
Sbjct: 217 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 276

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE 523
            ++   D++ R   ++    IPD+      +N    LFSP    D+  +YGK F +I+  
Sbjct: 277 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVS 333

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           ++  +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SN
Sbjct: 334 DHYAEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSN 392

Query: 584 LCTEI-TLNSSS--------EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS S        EE      CNLGS+N+         D      T+  A+R 
Sbjct: 393 LCSEILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRG 447

Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     +
Sbjct: 448 LTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAV 507

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRL 744
            + A+ AS ++A+ERG  +S FK S +  GVF     P +      +V+ EL  N T   
Sbjct: 508 LYAALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVK-ELFANSTIHT 566

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++        
Sbjct: 567 PSAEDWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 619

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N     D+L      A+E+    +I++ 
Sbjct: 620 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEVGHEKIIDTY 656

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 657 AVATKYVDQGLSLTLFFRDTAATRDINRAQIFAWRKGIKTLYYIRLR 703


>gi|149277656|ref|ZP_01883796.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
 gi|149231344|gb|EDM36723.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
          Length = 696

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 61/608 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+ L L +   +  A  +  LL +  +  +TPT  NSG  R  +L SCFL  + D+L G
Sbjct: 119 VAVALFLGQGNVD-HAKAYAELLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNG 177

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+   GG+  + + +RG G  I     ++ GV+P +K+  DT    NQ G
Sbjct: 178 IGYAIDSAMKLSSIGGGVSFNISKIRGRGESIKDVENRAGGVLPIMKILEDTFSYANQLG 237

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++    LF
Sbjct: 238 QRPGAGAVYLNVFHTDIEEFLDCKKINVDEKVRIKSLSIGVIVPDKFMELAEKDEACYLF 297

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +  Y  E ++  E YE       +K  +KI+A  L  K+     E+G+P++ 
Sbjct: 298 QPHTVYKAYGKYLDEMDMD-EMYEELLTNSAVKK-KKINARHLMVKIAQTQKESGYPYLF 355

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLAH 610
           FK   N     + +G V  SNLCTEI   S   +  +            CNLGS+N+   
Sbjct: 356 FKGNANKGHALKDIGNVKFSNLCTEIMQVSEVSDIEIYGREDQIKYGISCNLGSLNIATV 415

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++   + TA+R L  V D+ N   +   +K+N    ++GLG M     L  
Sbjct: 416 MENK-----RIKEAVTTAMRSLTVVSDLTNIAMVPSVQKANKELHSVGLGAMNLHGFLTK 470

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728
             I Y S EA++  +     ++F++I +S+E+A+E+   +  F+ S +  G +    I  
Sbjct: 471 NFIMYESKEALDFCNVFFMMVNFYSIQSSMEIAKEKKETFVGFEKSEYANGNYFSQYIAK 530

Query: 729 -LAEVRDELA-----MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            +  V D++A     M   +   W +L   VK  G+ ++  +AIAP  + + I   + S+
Sbjct: 531 DILPVNDKIAKLFEGMAIPTAEDWKQLMANVKEFGLYHAYRLAIAPNQSTSYIMNATASV 590

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P                     +V+ ++ R+  D      + Y D          +D  
Sbjct: 591 MP---------------------VVDVIEVREYGDSTTYYPMPYLD----------NDNY 619

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + +A+++D   ++   S  QK +DQ  S  L+ + + + + +   Y  A  MGLK+ Y
Sbjct: 620 FFYKSAYDMDQKNVLRLISVIQKHVDQGISTILHTNTKDNTRDIAKYYIYAHKMGLKSLY 679

Query: 902 YLRSRSAT 909
           Y R+R A+
Sbjct: 680 YTRTRKAS 687


>gi|25028979|ref|NP_739033.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           efficiens YS-314]
 gi|23494266|dbj|BAC19233.1| ribonucleotide reductase alpha chain [Corynebacterium efficiens
           YS-314]
          Length = 721

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 192/679 (28%), Positives = 307/679 (45%), Gaps = 76/679 (11%)

Query: 271 ESMMDFDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM- 326
           E +  +D  Y+ +  K  Y   F F+ +LG    Y  Y L     R  + + F  RV M 
Sbjct: 82  EVLDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMV 140

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385
            L L + ++E  A    + + +  F  +TPT  NSG  +  +  SCFL  + D++  I  
Sbjct: 141 ALTLADGDRET-ANALVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGR 199

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+
Sbjct: 200 AINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQ 259

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP 
Sbjct: 260 GAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP- 318

Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
              D+  +YGK F +I+  E Y    D   I+   KI+A   ++ +  + FE+G+P+I F
Sbjct: 319 --YDVERIYGKPFADISVTELYNEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMF 375

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611
           +D  N  +P +  G V  SNLC+EI   S+              E   CNLGS+N+    
Sbjct: 376 EDTVNEANPIE--GRVTHSNLCSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-- 431

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D    + TI TA+R L  V +  +  ++   +K N    AIGLG M     L   
Sbjct: 432 ---AMDSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGRE 488

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID 724
           HI Y S E ++  +     + +  + AS ++A+ERG  +++F+ S +  GV+     P +
Sbjct: 489 HIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAE 548

Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 +V+ EL  N T   P    W +LK  V   G+ N    A+ PT +I+ I   + 
Sbjct: 549 FAPKTDKVK-ELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTS 607

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++                         E  I  + Y    + N     D+
Sbjct: 608 SIHPIASKIEIRK------------------------EGKIGRVYYPAPHMDN-----DN 638

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
           L+     A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 639 LEYFQ-DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKT 697

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + + G
Sbjct: 698 LYYIRLRQ-VALEGTEIDG 715


>gi|197249723|ref|YP_002147707.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197213426|gb|ACH50823.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 714

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 191/659 (28%), Positives = 303/659 (45%), Gaps = 78/659 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 97  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 153

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFRLAKENAKMALFSP---YDVQRRYGKPFGDIAISER 330

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 331 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 386

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 387 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 441

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y S EA++  +     I
Sbjct: 442 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSSEALDFTNLYFYTI 501

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 502 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLP 561

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 562 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 622 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 650

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 651 AEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALEGTEIEG 708


>gi|190893562|ref|YP_001980104.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium etli
           CIAT 652]
 gi|190698841|gb|ACE92926.1| ribonucleoside-diphosphate reductase protein, alpha subunit
           [Rhizobium etli CIAT 652]
          Length = 693

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 190/666 (28%), Positives = 301/666 (45%), Gaps = 85/666 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 61  FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 120

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 121 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 177

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 178 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 237

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+ 
Sbjct: 238 LNAHHPDIMRFLDTKRENVDEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVE 294

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y        I   +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 295 RVYGVPFTEISVTEKYREMVGDARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNR 353

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P    G +  SNLC+EI   S + E               CNLGS+N+ A  A +  D
Sbjct: 354 ANPID--GRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSAD 409

Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S
Sbjct: 410 FGK---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGS 466

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDS 725
            E V+  +     +++HAI AS  LA ERG ++  F+ S +  G +          P  +
Sbjct: 467 EEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYACGDYFDKYTEQEWKP--A 524

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  + D+  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 525 TEKVQALFDKSGIHIPTQDDWAELKTAVMASGLYNQNLQAVPPTGSISYINHSTSSIHP- 583

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDL 841
                               +V++++ R              +G IG +      + +D 
Sbjct: 584 --------------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDN 610

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900
              +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT 
Sbjct: 611 LDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTI 670

Query: 901 YYLRSR 906
           YY+R R
Sbjct: 671 YYIRLR 676


>gi|209551074|ref|YP_002282991.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536830|gb|ACI56765.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 734

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 188/663 (28%), Positives = 298/663 (44%), Gaps = 79/663 (11%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 102 FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALSLARGD 161

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S     +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 162 ---EALARDMVDEIISGRLQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 218

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R   A I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 219 QLSKRGGGVALSLTNIREASAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 278

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++
Sbjct: 279 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFELARNNEDMYLFSPYDVERIY 338

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 339 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 396

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + E               CNLGS+N+ A  A +  D+ 
Sbjct: 397 PI--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA--AMDSADFG 452

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   TI T++R L  V D++   ++   +K N    AIGLG M     L    I Y S E
Sbjct: 453 K---TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 509

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG------LLAE 731
            V+  +     +++HAI AS  LA ERG ++  F+ S +  G +  D            +
Sbjct: 510 GVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYASGEY-FDKYTEQEWQPATEK 568

Query: 732 VR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           VR   D   +   ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 569 VRALFDNAGIPVPTQEDWLALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP---- 624

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKI 844
                            +V++++ R              +G IG +      + +D    
Sbjct: 625 -----------------IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLDY 654

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 655 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYI 714

Query: 904 RSR 906
           R R
Sbjct: 715 RLR 717


>gi|226305839|ref|YP_002765799.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
 gi|226184956|dbj|BAH33060.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
          Length = 727

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 186/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           D  Y + F F  +LG    Y  Y L   +G R    + F  RV M         E  AVE
Sbjct: 103 DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLAAGNEDLAVE 160

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+
Sbjct: 161 LVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGV 220

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 221 ALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIY 280

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +
Sbjct: 281 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINV 340

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           + + YE   D+   K   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 341 SEKYYEMVDDKRIRK--SKIKAREFFQTVAELQFESGYPYIMFEDTVNRANPIE--GKIT 396

Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S+              +   CNLGS+N+         D    A TI  +
Sbjct: 397 HSNLCSEILQVSTPSLFNDDLSYSKVGKDISCNLGSLNIA-----KTMDSPDFAKTIEVS 451

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  + +++   ++ N+   AIGLG M     L    I Y S E ++  +   
Sbjct: 452 IRGLTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSVEGIDFTNIYF 511

Query: 688 EFISFHAISASVELAQERGAYSSFKG---SLWDQGVF-----------PIDSI-GLLAEV 732
             + FHA+ AS ++A ERG+Y  FKG   S +  G F             D + GL A+ 
Sbjct: 512 YTVLFHALRASNKIAIERGSY--FKGFPESKYASGEFFDKYTDQVWEPATDKVRGLFADA 569

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV- 791
           +    ++  ++  W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + 
Sbjct: 570 K----LHIPTQDDWRELKASVQKHGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIR 625

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K    G       +L N+                       N+E   D        A+EI
Sbjct: 626 KEGKIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEI 654

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               ++++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 655 GYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MA 713

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 714 LEGTEVEG 721


>gi|163842201|ref|YP_001626606.1| ribonucleotide-diphosphate reductase subunit alpha [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955677|gb|ABY25192.1| ribonucleoside-diphosphate reductase alpha chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 706

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 179/661 (27%), Positives = 297/661 (44%), Gaps = 76/661 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+ LA      E  A++  
Sbjct: 87  YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEDLALKLV 143

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 144 DEIIDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 204 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDINRF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    +PD+  +   ++    LFSP +V  ++ +   +  +  
Sbjct: 264 LDTKRENADEKIRIKTLSLGVVVPDITFELAKRDEDMYLFSPYDVEKVYGIPFSDISVT- 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D   IK   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G +  S
Sbjct: 323 EKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GKIIMS 379

Query: 583 NLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   S         S  ET     CNLGS+N+         D     +TI T++R
Sbjct: 380 NLCSEILQVSKPTVYNDDLSYAETGKDISCNLGSLNIA-----RTMDSPDFGNTIETSIR 434

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ +  ++    K N   RAIGLG M     L    + Y S E ++  +     
Sbjct: 435 ALSAVSDMSDIRSVPSIAKGNRASRAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYT 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTS 742
           + +HA+ AS  LA E G  +  F+ S +  G F       + +     VR+  A ++  +
Sbjct: 495 VVYHALRASNLLAIETGETFGGFENSKYASGEFFDKYTDQERLPQTERVRELFANVHIPT 554

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  LK  +   G+ N N  A+ PT +I+ I   + SI P    + ++          
Sbjct: 555 QDDWRSLKASIMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK--------- 605

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIE 858
                                    +G IG +      + +D  + +  A+EI    +I+
Sbjct: 606 -------------------------EGKIGRVYYPAPYLTNDNLEFYQDAYEIGYEKIID 640

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  S + ++     AW  G+KT YY+R R   ++E + ++
Sbjct: 641 TYAAATQHVDQGLSLTLFFKDTASTRDINKAQIYAWRKGIKTVYYIRLRQ-LALEGTEVE 699

Query: 918 G 918
           G
Sbjct: 700 G 700


>gi|283832327|ref|ZP_06352068.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071974|gb|EFE10083.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 653

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 182/649 (28%), Positives = 281/649 (43%), Gaps = 75/649 (11%)

Query: 287 YERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVE 341
           ++RD  F Y  ++ L  +Y +   + G   E  Q  ++ VA  L      +E R      
Sbjct: 29  HDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FSNYPRETRLQYVKR 87

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           FY+ +S+F     TP +  SG R P  Q SSC L    D L  I               G
Sbjct: 88  FYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAG 145

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH++V
Sbjct: 146 IGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEV 205

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GK 516
           E  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L+D +     
Sbjct: 206 ESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQD 265

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQH 575
           EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D CN  SP    
Sbjct: 266 EFERLYTQYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPV 321

Query: 576 VGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           V  V  SNLC EI L        N  + E A+C L + NL A  +      D+L      
Sbjct: 322 VAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSAFNLGAINS-----LDELEELAVL 376

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR LD ++D   + I  AK+     R +G+G++ +   L      Y+   A  +  ++ 
Sbjct: 377 AVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLAKNGKRYSDGSANNLTHKTF 436

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM-NRTSRLPW 746
           E I ++ + AS ELA E+GA   F  + + QG+ PID+       +D  A+ N    L W
Sbjct: 437 EAIQYYLLKASNELAIEQGACPWFNETTYSQGILPIDTYK-----KDLDAISNEPLHLDW 491

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K++  G   ++   +
Sbjct: 492 EALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVV 548

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            +     D ++  ++ ++  +DG                           ++     QK+
Sbjct: 549 PDYEHLHDAYE--LLWEMPSNDG--------------------------YLQLVGIMQKF 580

Query: 867 IDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSRSA 908
           IDQ+ S N   D    PSGK    +L      A+  G+KT YY  +R  
Sbjct: 581 IDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDG 629


>gi|259508043|ref|ZP_05750943.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
 gi|259164384|gb|EEW48938.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
          Length = 701

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 192/679 (28%), Positives = 307/679 (45%), Gaps = 76/679 (11%)

Query: 271 ESMMDFDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM- 326
           E +  +D  Y+ +  K  Y   F F+ +LG    Y  Y L     R  + + F  RV M 
Sbjct: 62  EVLDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMV 120

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385
            L L + ++E  A    + + +  F  +TPT  NSG  +  +  SCFL  + D++  I  
Sbjct: 121 ALTLADGDRET-ANALVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGR 179

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+
Sbjct: 180 AINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQ 239

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP 
Sbjct: 240 GAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP- 298

Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
              D+  +YGK F +I+  E Y    D   I+   KI+A   ++ +  + FE+G+P+I F
Sbjct: 299 --YDVERIYGKPFADISVTELYNEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMF 355

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611
           +D  N  +P +  G V  SNLC+EI   S+              E   CNLGS+N+    
Sbjct: 356 EDTVNEANPIE--GRVTHSNLCSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-- 411

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D    + TI TA+R L  V +  +  ++   +K N    AIGLG M     L   
Sbjct: 412 ---AMDSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGRE 468

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PID 724
           HI Y S E ++  +     + +  + AS ++A+ERG  +++F+ S +  GV+     P +
Sbjct: 469 HIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAE 528

Query: 725 SIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 +V+ EL  N T   P    W +LK  V   G+ N    A+ PT +I+ I   + 
Sbjct: 529 FAPKTDKVK-ELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTS 587

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++                         E  I  + Y    + N     D+
Sbjct: 588 SIHPIASKIEIRK------------------------EGKIGRVYYPAPHMDN-----DN 618

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
           L+     A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 619 LEYFQ-DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKT 677

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + + G
Sbjct: 678 LYYIRLRQ-VALEGTEIDG 695


>gi|325675840|ref|ZP_08155524.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
 gi|325553811|gb|EGD23489.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
          Length = 728

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A 
Sbjct: 104 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---ETLAT 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 161 ELVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 220

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 221 VALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 280

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  
Sbjct: 281 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 340

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 341 VT-EKYHEMVDDKRIRK-SKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--AGKI 396

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI       T N     + V     CNLGS+N+         D    A TI T
Sbjct: 397 THSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAL-----TMDSPDFAKTIET 451

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  + +++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 452 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 511

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HAI AS  +A+ERG  +  F  S +  G +       + E + E    L  +  
Sbjct: 512 FYSVVYHAIRASNLIAKERGTHFKGFPESDYASGKYFDKYTDQVWEPKTEKVRQLFADAG 571

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
             +P    W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 572 IHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKI 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       +L N+                       N+E   D        A+EI    +
Sbjct: 632 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 660

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 661 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-MALEGTE 719

Query: 916 LKG 918
           ++G
Sbjct: 720 VEG 722


>gi|120402409|ref|YP_952238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955227|gb|ABM12232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
          Length = 698

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 175/668 (26%), Positives = 278/668 (41%), Gaps = 93/668 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D    Y+           A  L   RD        + +L +RY  
Sbjct: 71  IQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKALLGVRDELKLSLAAVTVLRERYLQ 130

Query: 308 HI-NGSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           H   G   E       R A  +A  E         + A +F   L    F+ ++PTL N+
Sbjct: 131 HDERGHPTESTGEMMDRAARYVAAAEDRYLPGSSARWADQFATSLRRLEFLPNSPTLMNA 190

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           G+    LS C +  V D L  IF  L   A + +  GG G  ++ +R  G  I  T G++
Sbjct: 191 GSDLGLLSGCVVLPVDDSLRSIFSTLGHAAEVQRCGGGTGFAFSRLRPAGDRIASTGGRA 250

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA    L+  H D++EF+  +  + +   R    N 
Sbjct: 251 SGPVSFLELFDTAARVVSLGGRRRGACMGVLDVSHPDIQEFVTAKTQSPE---RLSHFNL 307

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D FM+ V            E  D+H L                     +   K+S
Sbjct: 308 SVGVSDSFMRAV------------ERGDVHRLVNPRTG---------------RTVAKVS 340

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV L+  +       G P + F D  N  +P   +G + ++N C E+ L  +      CN
Sbjct: 341 AVELFDVICESAHACGDPGLVFLDTVNRANPVPRLGRIEATNPCGEVPLLPNES----CN 396

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL     + + D+ +L      AVR LD+VID++ +  ++   +    R IGLG+M
Sbjct: 397 LGSLNLARMVTDGRIDWCRLRDVTALAVRFLDDVIDVSRYPFDELDAAGRATRKIGLGVM 456

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L IPY S +AV +A   M  +   A   S +LA ERG + ++          
Sbjct: 457 GLAEVLASLGIPYDSDDAVRLAGRIMGRVQRVAHETSEQLAAERGPFPAYP--------- 507

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                               SRL          T   RN+   ++APT TI+ I G +  
Sbjct: 508 -------------------DSRL----------TRPRRNAQLTSVAPTGTISLIAGTTAG 538

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   Y ++ +      VN       ++R  + + +I+++    G  G    +P D+
Sbjct: 539 IEPMFAIAYTRAVVGRHLLEVNPCFDRMARRRGFYTDELITEIARSGGVRGYRGDLPADV 598

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK-- 898
           +    TA EI P W +   +  Q+ +D A S  + L E  +   +  IY  AW   +K  
Sbjct: 599 RAAFPTAAEISPEWHLRMQAAVQRHVDAAVSKTVNLPEAATADDVRAIYLSAWKAKVKGI 658

Query: 899 TTYYLRSR 906
           T Y   SR
Sbjct: 659 TVYRYGSR 666



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV +R+G +  FD  +I  A+ +A  A E   A   +            TV   +     
Sbjct: 15  QVRRRDGTLVPFDIGRIEAAVSRA--ACEVACADPDM----------PGTVAVTVADALG 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + I  +E IQD VE  L ++G   + R Y++YR   +++R+A++
Sbjct: 63  SAIAPVEKIQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKA 106


>gi|16761589|ref|NP_457206.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143069|ref|NP_806411.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25328484|pir||AG0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503890|emb|CAD05918.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138702|gb|AAO70271.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 714

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 193/677 (28%), Positives = 306/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 79  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 138

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 139 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 195

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 196 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 255

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    
Sbjct: 256 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 312

Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           D+   YGK F +IA  E Y E  AD    K +  I+A   ++ +  + FE+G+ +I F+D
Sbjct: 313 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLYIMFED 370

Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613
             N  +P    G ++ SNLC+EI  +NS+S                CNLGS+N +AH   
Sbjct: 371 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 425

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L    I
Sbjct: 426 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 483

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727
            Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G +    +     
Sbjct: 484 AYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 543

Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 603

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE                       N++   D   
Sbjct: 604 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 637

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ Y
Sbjct: 638 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 692

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 693 YIRLRQ-LALESTEIEG 708


>gi|260583951|ref|ZP_05851699.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158577|gb|EEW93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
          Length = 725

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 175/660 (26%), Positives = 290/660 (43%), Gaps = 84/660 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y++ F F  ++     Y +Y L  N G R    + F  R+           E+ A +   
Sbjct: 91  YKKKFRFRSFMSAFKFYKQYALKTNDGER--YLERFEDRIVFNALFLADGDEQLARDLAE 148

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G  
Sbjct: 149 EMIHQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVS 208

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + VR  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL
Sbjct: 209 LSNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFL 268

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA-- 521
             +K   D++ R   ++    +PD F + +  +    LFSP    D+  +YG  F     
Sbjct: 269 STKKENADEKIRVKTLSLGLVVPDKFYELIKNDDMMYLFSP---YDVERIYGVPFSYVDI 325

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            + YE   +  EI+   K+ A  L +++  +  E+G+P+I   D  N  +P    G +  
Sbjct: 326 TKEYENMVNNSEIRK-SKLRARDLEQEISKLQQESGYPYIVNIDTVNKANPID--GKIIM 382

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI        +N++ E   +     CNLGS N++    +  F+      +I  AV
Sbjct: 383 SNLCSEILQVQSPSVINNAQEYEVLGTDISCNLGSTNIVNLMQSPDFE-----RSIEVAV 437

Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D  +   +   K  N     IGLG MG  +   L  + Y SPE++E+ D    
Sbjct: 438 RALTFVTDHSSIDAVPTVKNGNQKAHTIGLGAMGLHTFFALNQMEYGSPESIEVTDLYFR 497

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-- 745
            ++F+ + AS ++A+ERG  +  F+ S +  G +         E++ E        LP  
Sbjct: 498 LLNFYTLKASHKIAKERGVTFDGFEKSAYASGTYFDAYTESDVEIKSEKVKEIFENLPIP 557

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W +LK  V   G+ + N +AIAPT +I+ +   S S+ P  +              
Sbjct: 558 TAEDWKQLKADVMADGLYHQNRLAIAPTGSISYVNETSASLHPITR-------------- 603

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               L+ E +++        +   Y+     + E +P      + +A++ID   +I+  +
Sbjct: 604 ----LIEERQEKK-------TGKTYYPAPFLSNETLP-----YYKSAYDIDMRKVIDVYA 647

Query: 862 RRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
             QK IDQ  SL L++  + P G              + L+ +   AW  G+K+ YY+R+
Sbjct: 648 AAQKHIDQGMSLTLFMRSELPEGLYEWKNGRTRKMTTRDLNILRNYAWNKGIKSIYYVRT 707


>gi|306845615|ref|ZP_07478184.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
 gi|306273936|gb|EFM55763.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
          Length = 738

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 299/677 (44%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +  + + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 ---EQLARDLVDEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRTN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PIE--GRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|289705576|ref|ZP_06501968.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
 gi|289557805|gb|EFD51104.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
          Length = 725

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 190/677 (28%), Positives = 296/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ +    D  Y+  F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 93  FEFIRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGD 152

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            E    A    + + +  F  +TPT  NSG +   +L SCFL  + D++  I   +    
Sbjct: 153 QE---LATHLVDEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSAL 209

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 210 QLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 269

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 270 LNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDMYLFSP---YDVE 326

Query: 512 DLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F EI+  E Y    D   IK   KI+A   ++ +  + FE+G+P++ F+D  N 
Sbjct: 327 RVYGVPFSEISVTEKYYEMVDDARIKK-TKINAREFFQTIAEIQFESGYPYVVFEDTVNA 385

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFD 617
            +P +  G +  SNLC+EI   S + E               CNLGS+N+         D
Sbjct: 386 ANPIK--GRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMD 438

Query: 618 YDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                 ++ TA+R L  V +  +  ++    K N    AIGLG M     L    + Y S
Sbjct: 439 SPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLHGYLARERVHYGS 498

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDS 725
            E ++  +     + FHA+ AS  +A E G  +  F+ S +  G F          P   
Sbjct: 499 EEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATE 558

Query: 726 --IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              GL AE    L     ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 559 RVAGLFAEAGIALP----TQDDWRELKASVMEHGIFNRNLQAVPPTGSISYINNSTSSIH 614

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G       +L NE             +L+Y++              
Sbjct: 615 PVASKIEIRKEGKLGRVYYPAPYLTNE-------------NLEYYE-------------- 647

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI    +I++ +   + +DQ  SL L+  D  + + L+     AW  G+KT Y
Sbjct: 648 ----DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWTKGIKTIY 703

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 704 YIRLRQ-LALEGTEVEG 719


>gi|260662381|ref|ZP_05863276.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553072|gb|EEX26015.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 721

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 184/661 (27%), Positives = 300/661 (45%), Gaps = 94/661 (14%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F+ ++G    Y +Y +  N  +  +       VA  L L   +++  A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYTQYAMKTNDGKRFLEDYNDRVVANALYLARGDQQ-LAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522
             D++ R   ++    +PD + + +  NA   LFSP +V        +E +  +      
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVE-------RELKTPFSYVDLT 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + Y+R      IK    ISA  L +K+  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 323 KEYDRLVANPRIKK-TAISARELEQKISRLQQESGYPYILNIDHANRDNPV--AGKIIMS 379

Query: 583 NLCTEI-------TLNSS-SEETA----VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI       TL S  S ET      CNLGS N+     +N          +  AVR
Sbjct: 380 NLCSEILQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVR 434

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L NV D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     
Sbjct: 435 ALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLA 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS----RL 744
           ++++++ AS ++A+ER   ++ FK S +  G +  D +     ++ E   NR +     L
Sbjct: 495 LNYYSLLASHQIAKERDETFAGFKDSRYADGSYFDDYVTKPFTLKFE--KNRAAFSGVHL 552

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W  LK+ V+T G+ + N +A+AP  +I+ +   S S+ P                
Sbjct: 553 PTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTP---------------- 596

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +   ++QR    E  +  L Y    + N E +P      +  A+++D   +I++ 
Sbjct: 597 -----ITQLVEQRQ---ENKVGALFYPAPYLSN-ETLP-----YYTPAYDLDQRKIIDTY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYYLR 904
           +  QK +DQ  SL L++              D+P  + + L+ +   AW  G+K+ YY+R
Sbjct: 643 AVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIR 702

Query: 905 S 905
           +
Sbjct: 703 T 703


>gi|227548645|ref|ZP_03978694.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079259|gb|EEI17222.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 721

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 183/671 (27%), Positives = 306/671 (45%), Gaps = 69/671 (10%)

Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +D  ++ +  K  Y   F F+ +LG    Y  Y L     R  + + F  RV+M      
Sbjct: 86  YDWQFVKDTFKRAYSYKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLA 144

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENA 391
           +  E+ A    + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  + 
Sbjct: 145 SGNEETASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSL 204

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 205 QLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 264

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++
Sbjct: 265 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNDDMYLFSPYDVERVY 324

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            L   +  +  E YE   +   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 325 GLPFADISVT-EKYEEMVEDPRIRK-TKINARHFFQTIAEIQFESGYPYIMFEDTANRAN 382

Query: 572 PQQHVGVVHSSNLCTEI-TLNSSS---EETAV--------CNLGSINLLAHFANNQFDYD 619
           P +  G ++ SNLC+EI  +NS S   E+ +         CNLGS+N+         D D
Sbjct: 383 PVK-TGRINMSNLCSEILQVNSPSVLNEDLSYAEVGHDISCNLGSLNIA-----KTMDSD 436

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             + T+ TA+R L  V D  +  ++   +  N+   AIGLG M     L   HI Y S E
Sbjct: 437 NFSRTVETAIRGLTAVADKTSIESVPPVRDGNNASHAIGLGQMNLHGYLGREHIEYGSEE 496

Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEV 732
            ++  +     + + AI AS  +A E+G  ++ F  S +  G F     P D      +V
Sbjct: 497 GLDFTNAYFAAVMYEAIKASHAIAVEKGERFADFDKSEYATGEFFDRYDPADFQPKTDKV 556

Query: 733 RDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + EL    +  +P    W +LK  V   G+ N    A+ PT +I+ I   + SI P    
Sbjct: 557 K-ELFARSSVAVPTAQQWAQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIASK 615

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y    + N     ++L      A
Sbjct: 616 IEIRK------------------------EGKIGRVYYPAPHMDN-----ENLSYFK-DA 645

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+K+ YY+R R 
Sbjct: 646 YEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTITTRDINRAQIYAWRKGIKSLYYIRLRQ 705

Query: 908 ATSVEKSTLKG 918
             ++E + ++G
Sbjct: 706 -MALEGTEVEG 715


>gi|154149571|ref|YP_001403189.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Methanoregula boonei 6A8]
 gi|153998123|gb|ABS54546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoregula boonei 6A8]
          Length = 741

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 167/604 (27%), Positives = 264/604 (43%), Gaps = 95/604 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  LA  E E+ +    FY  + S  F+ ++PTL N+GT   QLS+CF   VPD + G
Sbjct: 29  RVASALADDENERAR----FYEAMISLRFLPNSPTLMNAGTEIGQLSACFTLPVPDTIDG 84

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A++E A++ K  GG G +++ +R  G+ +  T+G + G I F++V N     + QGG
Sbjct: 85  IFDAMKEGAIIHKTGGGTGYNFSHIRPEGSPVQSTDGVASGPISFMRVFNAATDVIKQGG 144

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L  WH D+  F+  +K  G+      + N +  + D FM  V         
Sbjct: 145 RRRGANMGILNVWHPDILAFISAKKKEGE----FSNFNISVMVNDKFMDLVA-------- 192

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                        K FE  +     +   GE     KI+   +W  ++  +++ G P I 
Sbjct: 193 ------------AKSFETVWLT---KGGTGE-----KITVGQIWNGIVEGIWKNGEPGIL 232

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +P   +G + ++N C E  L         C LGSINL A      FD D L 
Sbjct: 233 FYDEINRHNPTPQLGEIDTTNPCGEQPLLPYES----CVLGSINLAACVREGAFDEDLLR 288

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T R A R LD VI+ N   I +  ++    R IGLG+MG   A+ +L + Y S +    
Sbjct: 289 DTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGLGVMGVHDAMLMLGLSYDSEKGRAW 348

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            +  M+ I+  AI  S  LA++ G + +++GS+W                          
Sbjct: 349 CEWVMKVITETAIEESHRLAEKLGTFPAWQGSIW-------------------------- 382

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801
                      K   +RN+    +APT TI+ + G S  I+P +   Y + N  G  F +
Sbjct: 383 -----------KDYEVRNAAMTTVAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKVFVI 431

Query: 802 VNSFLVNEL-----------KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VN      L            +R+     +IS + +  GS+ ++  +  + + +  TA +
Sbjct: 432 VNPVFKEALLHTLTGMGYAGDEREKKAGEVISHV-HETGSMQDVAWLSAEFRGLFKTALD 490

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLRSRS 907
           I     I   +  QK++    S++  ++ P     D        AW +GLK     R+ S
Sbjct: 491 IPWREHILMQACFQKYVH--ASISKTINMPGSATKDDCAEALLMAWKLGLKGITIYRTGS 548

Query: 908 ATSV 911
              V
Sbjct: 549 REDV 552


>gi|281491478|ref|YP_003353458.1| ribonucleoside-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375196|gb|ADA64709.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 722

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 198/720 (27%), Positives = 319/720 (44%), Gaps = 91/720 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYE 288
           +E +T  +K+  +   +E      +      EE ++A  L +   +F +  L  +L K+E
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEF-ITNLRKELSKFE 90

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
             F   ++     Y++Y +  N   + + + F  RV M         EK A      + +
Sbjct: 91  FHFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMIN 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +
Sbjct: 149 RRYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 RAAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYEN 524
              D++ R   ++    +PD F + V +     LF P  V      YGK F   +I  E 
Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAE- 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y++     EI+    I++  L +++  +  E+G+P+I   D  N  +P    GV+  SNL
Sbjct: 325 YDKMVANPEIRK-TPINSRELEQELSKLQQESGYPYIVNVDTVNQANPVD--GVISMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        LN       V     CNLGS N+L    ++    ++  ++I   VR L
Sbjct: 382 CSEILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----NEFGTSIEAMVRAL 437

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++
Sbjct: 438 TFISETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLN 497

Query: 692 FHAISASVELAQERGAYSSFK---------GSLWDQGVFPIDSIGLLAEVRDEL--AMNR 740
           ++ + AS +LA E+G  SSFK         GS +D+     D    ++    EL   +  
Sbjct: 498 YYTLVASNKLAVEKG--SSFKNFEKSAYADGSYFDK-YLTHDYFAAVSSKVQELFKGIAV 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+  VKT G+ NS  MA+AP  +I+ I   S SI P                
Sbjct: 555 PTIEDWTALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHP---------------- 598

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +VN +++R    E  +  + Y    +   E IP      + +A++ D   +I+  
Sbjct: 599 -----IVNRIEER---QEKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVY 644

Query: 861 SRRQKWIDQAQSLNLYLDE--PSG-------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++    P G             + L  +   A+  G+KT YY+R+
Sbjct: 645 AAATEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|206576590|ref|YP_002236985.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|206565648|gb|ACI07424.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
          Length = 713

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 177/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++ +E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +P    G +  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A TI TAVR L  V D+ +  ++      N    AIGLG M     L 
Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S+ LA+ERG  ++ F+ S +  G +    + 
Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  V   G+ N    A+ PT +I+ I   +
Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707


>gi|290510979|ref|ZP_06550348.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
 gi|289775972|gb|EFD83971.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
          Length = 713

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 177/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++ +E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +P    G +  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A TI TAVR L  V D+ +  ++      N    AIGLG M     L 
Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S+ LA+ERG  ++ F+ S +  G +    + 
Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  V   G+ N    A+ PT +I+ I   +
Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHAT 598

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707


>gi|310722638|ref|YP_003969461.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
 gi|306021481|gb|ADM80015.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
          Length = 744

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 183/666 (27%), Positives = 293/666 (43%), Gaps = 50/666 (7%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL-ETALIFSSRTLI 210
           G    F   +L  I+  A  G + +S K +L     ++ +G+S   + E A+ F++  + 
Sbjct: 8   GITEEFTVGKLFKILSFATEGTR-ISPKEILDGIMPSITEGMSTKRIQEIAIKFAADRIS 66

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            ++ +Y  V AR  +  LR++V       P     H M           + +G     L 
Sbjct: 67  IEQSDYQYVAARLQMYALRKQVYNQF--DPIHLKPHVMDL---------VMDGKYDPELC 115

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGL 328
               D +   L   +K++RDF   Y G+    ++Y       G   E PQ  +M VAM L
Sbjct: 116 SKWTDEEFEELNAYIKHDRDFNLAYAGVMQFKEKYLAKDRSTGEVFETPQMLYMLVAMCL 175

Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385
             +E T++ ++   FY++ S       TP L  +G R P  Q SSC      D+L  I  
Sbjct: 176 HQEEKTDRLQKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIECGDELDSINA 233

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
                        G+G +   +R  G+ I     +  G+IPF K       + +QGG R 
Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   Y   WH++VE+ L L+ N G +  R   ++    I  L ++R+  +   TLFSPD
Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKLMLERLKNDDYITLFSPD 353

Query: 506 -EVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            +  +L+DLY  +   F   YE  E +       + ++I A  L+         TG  + 
Sbjct: 354 VQKGELYDLYYSDPVKFRELYEMLENEP----FLIKKRIKASELFNLFAQERSGTGRIYP 409

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLGSINLLAHFANNQ 615
            F D  N  +P +    +  SNLC EI L +       + E A+C L + NL A    N 
Sbjct: 410 MFIDNVNSATPYKE--PIRQSNLCIEIALPTYPVHRDGTGEIALCTLAAYNLGAIEGYND 467

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F      +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L    + Y+
Sbjct: 468 F-----LNVARAAVRALDNLLDYQEYPVVQALAAKK-RRALGIGVTNFAYFLAKNFVKYS 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID--SIGLLAEVR 733
              A ++   +ME + F  I AS+ELA+ERGA      + W  G+ PID  +  + + V 
Sbjct: 522 DGSANKLVHRTMEMMQFANIVASMELAKERGASEWHHKTKWADGLLPIDWYNKNVDSIVP 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           ++L M+      W+ L+  +K  GMRN    A  P  + + I   +  I+P    +  K 
Sbjct: 582 NDLKMD------WEWLRGEIKKYGMRNDTLSAFMPCESSSQITNSTNGIEPPRGLVSTKQ 635

Query: 794 NMSGDF 799
           +  G F
Sbjct: 636 SKDGVF 641


>gi|153004250|ref|YP_001378575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027823|gb|ABS25591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 593

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 168/616 (27%), Positives = 265/616 (43%), Gaps = 82/616 (13%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFF--MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           L +L  RY L    G+ +E P A F  +  A+  A    E+++ A  F   +S+  F+ +
Sbjct: 9   LHVLERRYLLRDERGAVVETPGALFRRVARAVAAAEPPAERDRAAERFEARMSALEFLPN 68

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R  G  +
Sbjct: 69  SPTLMNAGRAHGQLAACFVLPVEDDLAAIFDALKWAALIHQSGGGTGFAFSRLRPRGDVV 128

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T+G + G + F++V +     + QGG R+GA  A L   H D+ EF+D +++ G    
Sbjct: 129 KTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLSAEHPDILEFVDAKRSHG---- 184

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +   PD   +  ++   W L  P                          RG I
Sbjct: 185 -LENFNLSVAAPDALFRAASRGDPWPLRHP--------------------------RGGI 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              R I   AL  ++    + +G P + F D     +P   +G   + N C E  L    
Sbjct: 218 --VRNIDPRALLARIADSAWASGEPGLVFLDRVEAANPTPDLGHFEAVNPCGEQPLLPFE 275

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                C LGS+NL     + + D+D L + +R  VR LD+V+D+N   + +  + +H +R
Sbjct: 276 ----ACTLGSVNLACFERSGRVDWDGLGACVRDGVRFLDDVLDVNVWPLPQIAEISHRNR 331

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MG+   L  L IPY SP+A+  ADE M F++  A +AS  LA+ERGA+  F  S
Sbjct: 332 KVGLGVMGWADLLVRLGIPYDSPDALAKADEVMGFVTREAHAASEALARERGAFPGFPTS 391

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                  P                                    RN+    IAPT T+A 
Sbjct: 392 ALAHAGRP-----------------------------------RRNATVTTIAPTGTLAL 416

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G S  I+P +   YV+  +          LV E  +                G    +
Sbjct: 417 IAGCSSGIEPLFALAYVRRALDDSELREEHPLVAEALRAAG--ADAALAAVRAAGRARGV 474

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ--- 891
             +P  + ++ ATA ++ P   +   +  Q+  D   S  + L  P    +D + R    
Sbjct: 475 PGVPPAVARLFATAHDVAPEAHVRMQAAFQRHTDNGVSKTINL--PRSAAVDDVARAYAL 532

Query: 892 AWLMGLKTTYYLRSRS 907
           A+ +G K     R  S
Sbjct: 533 AYELGCKGITVYRDGS 548


>gi|296104352|ref|YP_003614498.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058811|gb|ADF63549.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 714

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 304/658 (46%), Gaps = 76/658 (11%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    ++F  RV M  L L + + E  A +    + 
Sbjct: 97  FRFQTFLGAWKYYTSYTLKTFDGKR--YLESFEDRVVMVALTLAQGD-EALAEQLMEEIL 153

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 154 SGRFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  K   +NA   LFSP    D+  +YGK F ++A  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDIERIYGKAFGDVAISEL 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + I+A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADDRIRK-KYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+S            +   CNLGS+N +AH      D      T+ TAVR L
Sbjct: 388 CSEILQVNSASTYDENLDYADIGKDISCNLGSLN-IAH----TMDSPDFGRTVDTAVRGL 442

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +  ++   +  N    AIGLG M     L    I Y SPE ++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP- 745
           +HA+  S+ LA+ER   ++ F+ S +  G +    +    + + E      +R    LP 
Sbjct: 503 WHALHTSMMLARERNQRFAGFEQSRYASGEYFSQYLESDWQPKTEKVRALFARAGIVLPT 562

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTV 801
              W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G    
Sbjct: 563 REMWQQLRDDVMRHGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYY 622

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              F+ NE       + A+  D                        A+EI P  +I++ +
Sbjct: 623 PAPFMTNE-------NLALYQD------------------------AYEIGPEKIIDTYA 651

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 652 EATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIRLRQ-LALEGTEIEG 708


>gi|284931053|gb|ADC30991.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. F]
          Length = 722

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 167/599 (27%), Positives = 271/599 (45%), Gaps = 70/599 (11%)

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 147 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTN 206

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G++ GVIP +K+  D+    NQ G+R G   AYL   H DV  FLD +
Sbjct: 207 LREFGAPIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSK 266

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524
           +   D++ R   +     +PD+  +    N    LFSP    D+   YGK F      E 
Sbjct: 267 RENADEKIRIKSLALGLVVPDITFELAKNNEQMALFSP---YDVQREYGKPFSDIKVTEE 323

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y    +   IK    ISA   ++ +  + FE+G+P++ F D  N R+P  + G +  SNL
Sbjct: 324 YHNMVNNPRIKK-TYISARKFFQTIAELHFESGYPYLLFDDTVNNRNP--NAGRIVMSNL 380

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +S+S E               CNLGS+N+     + +    +   ++  A++ L
Sbjct: 381 CSEIVQSSTSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSAE----RFEDSVYYAIKSL 436

Query: 633 DNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           D+V    N       K  N  + A+GLG M     L    I Y SPEA+E  D     ++
Sbjct: 437 DHVSKSANLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLA 496

Query: 692 FHAISASVELA-QERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTS 742
           ++A  AS  LA +++  Y++FK S +  G +        P   +    +++ E+  N   
Sbjct: 497 YYAFKASNRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIK-EIFSNYKI 555

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           ++P    W  L + +K  G+ N++ +AIAPT +I+ +   + SI P    + V+      
Sbjct: 556 KVPTQADWQALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIG 615

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                ++ +NE   +            Y DG                  A+E+ P   I+
Sbjct: 616 RVYSLAYKLNEHNYK-----------YYKDG------------------AYELGPNPYID 646

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
             ++ QK +DQA SL L++ D  + + L+  Y +A+     + YY+R R     E   L
Sbjct: 647 ICAQAQKHVDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVRQNVLEESENL 705


>gi|312140540|ref|YP_004007876.1| ribonucleoside-diphosphate reductase nrde [Rhodococcus equi 103S]
 gi|311889879|emb|CBH49196.1| ribonucleoside-diphosphate reductase NrdE [Rhodococcus equi 103S]
          Length = 701

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A 
Sbjct: 77  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---ETLAT 133

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 134 ELVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 193

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 194 VALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  
Sbjct: 254 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADIN 313

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 314 VT-EKYHEMVDDKRIRK-SKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--AGKI 369

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI       T N     + V     CNLGS+N+         D    A TI T
Sbjct: 370 THSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAL-----TMDSPDFAKTIET 424

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  + +++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 425 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 484

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HAI AS  +A+ERG  +  F  S +  G +       + E + E    L  +  
Sbjct: 485 FYSVVYHAIRASNLIAKERGTHFKGFPESDYASGKYFDKYTDQVWEPKTEKVRQLFADAG 544

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
             +P    W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 545 IHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKI 604

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       +L N+                       N+E   D        A+EI    +
Sbjct: 605 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 633

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 634 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQ-MALEGTE 692

Query: 916 LKG 918
           ++G
Sbjct: 693 VEG 695


>gi|213052491|ref|ZP_03345369.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424575|ref|ZP_03357364.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213650064|ref|ZP_03380117.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213864814|ref|ZP_03386933.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289824436|ref|ZP_06544025.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 705

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 193/677 (28%), Positives = 306/677 (45%), Gaps = 91/677 (13%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 70  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAG 246

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    
Sbjct: 247 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---Y 303

Query: 509 DLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           D+   YGK F +IA  E Y E  AD    K +  I+A   ++ +  + FE+G+ +I F+D
Sbjct: 304 DIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLYIMFED 361

Query: 566 PCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFAN 613
             N  +P    G ++ SNLC+EI  +NS+S                CNLGS+N +AH   
Sbjct: 362 TVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV-- 416

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L    I
Sbjct: 417 --MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGI 474

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG---- 727
            Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G +    +     
Sbjct: 475 AYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQ 534

Query: 728 -LLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 535 PKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIH 594

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K   +G       F+ NE                       N++   D   
Sbjct: 595 PIVAKIEIRKEGKTGRVYYPAPFMTNE-----------------------NLDMYQD--- 628

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ Y
Sbjct: 629 -----AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLY 683

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 684 YIRLRQ-LALESTEIEG 699


>gi|71894416|ref|YP_278524.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           synoviae 53]
 gi|71851204|gb|AAZ43813.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           synoviae 53]
          Length = 724

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/588 (27%), Positives = 277/588 (47%), Gaps = 68/588 (11%)

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 150 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIARAVTTSLQLSKRGGGVALSLTN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD +
Sbjct: 210 LREFGAPIKQIQGQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLHAHHPDIMTFLDSK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    +P++  +    N    LFSP +V  ++ +   + ++  E Y 
Sbjct: 270 RENADEKIRIKSLSLGIVVPNITFELAKNNEDMALFSPYDVEKVYGVPFSDIKVTEEYYN 329

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +    K F  + A   ++ +  + FE+G+P++ F D  N R+P  + G +  SNLC+
Sbjct: 330 MLNNPKIRKTF--VKARKFFQTVAELHFESGYPYLLFDDTVNDRNP--NAGRIVMSNLCS 385

Query: 587 EITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI  +SS  E               CNLGS+N +    N   D+ K   ++  A++ LD+
Sbjct: 386 EIVQSSSLTEYDTDLTVKKLGEDISCNLGSMN-VDKLMNAGSDFGK---SVFYAIKSLDH 441

Query: 635 V---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           V    D++C         N  +RA+GLG M       +  + Y SPEA+E  +     ++
Sbjct: 442 VSRGCDLSC--APSINHGNRNNRALGLGAMNLHGFFAVNEVYYDSPEALEFTNLFFYALA 499

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMN 739
           +HA  AS  LA+ER   Y +FK S +  G +               +  + E+  +  + 
Sbjct: 500 YHAYKASNLLAKERNETYKNFKSSKYATGEYFDKYTKCKSDLYTAKLPKVIELFKKHNVT 559

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +++ W EL + +K  G+ NS+ +A+APT +I+ +   + S+ P    + V+    G  
Sbjct: 560 LPTQIDWSELVESIKKYGLANSHVLAVAPTGSISYLSSCTPSLQPVVSPVEVRK--EGKL 617

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V S L  +L + +           Y DG                  A+E+ P  +I+ 
Sbjct: 618 GRVYS-LAYKLDENNYK--------YYKDG------------------AYELGPNPIIDI 650

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            ++ QK +DQA SL L++ D+ + + L+  Y +A+     + YY+R R
Sbjct: 651 VAQAQKHVDQAISLTLFMNDKATTRDLNKAYIRAFKAKCSSIYYVRIR 698


>gi|228473105|ref|ZP_04057862.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275687|gb|EEK14464.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 551

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 171/594 (28%), Positives = 265/594 (44%), Gaps = 114/594 (19%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A K   K +    F  +++      S+P   N GT      SCF   +PD + GI   L 
Sbjct: 40  AAKRLYKPELQPAFKEMITKGWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLG 99

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  M  K  GG    +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA 
Sbjct: 100 EVIMQTKIGGGTSGYFGELRHRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAF 158

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            AYL+  H D EEFL + K+TG       ++     +PD +M+ + +             
Sbjct: 159 AAYLDIDHPDAEEFLQI-KDTG---YHIQNLFFGVCVPDYWMQEMIEG------------ 202

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                          + E++                LW ++L    + G P+I F D  N
Sbjct: 203 ---------------DTEKRK---------------LWARVLESRQQKGLPYIFFTDNVN 232

Query: 569 IRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            + PQ +      +H+SNLC+EI L SS EE+ +C L S+NL        FD  K    +
Sbjct: 233 RKRPQVYKDNNMFIHASNLCSEIMLPSSEEESFICCLSSMNL------ELFDEWKDTKAV 286

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYAS 676
           + A+  LD V+      IEK K + +          HRA+GLG++G+ S L    IP+ S
Sbjct: 287 KLAIFFLDAVLS---EFIEKTKGNYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFES 343

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA +    + + I   A  A+ ELA   G     KG                       
Sbjct: 344 FEATQFNARAFQHIQSEAEKATQELAHIYGEPELLKG----------------------- 380

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795
                               G RN+  MAIAPT + + I G VS  I+P   N Y     
Sbjct: 381 -------------------YGRRNATTMAIAPTTSSSAILGQVSPGIEPFSSNYYKVGLS 421

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F   N +L   L+++ L +E +   ++  DGS+ +++ +  + K +  T  EI PM 
Sbjct: 422 KGNFMRKNKYLTQLLEEKGLNNEDIWRSIRLSDGSVQHLQELTQEEKNVFKTFKEISPME 481

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG--KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +I  A++RQ++IDQ+QSLNL +  P+   + ++ +  +AW +G+K+ YY RS+S
Sbjct: 482 IITQAAQRQQYIDQSQSLNLNIP-PTMPIRDVNKVLIEAWKLGVKSLYYQRSQS 534


>gi|288933943|ref|YP_003438002.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|288888672|gb|ADC56990.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
          Length = 713

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 286/621 (46%), Gaps = 71/621 (11%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  + ++ ++ +E   +LS   F  +TPT  N+G +   +L SCFL  + D++  
Sbjct: 132 VALTLAQGDDQQARQLME--EMLSG-RFQPATPTFLNAGKQQRGELISCFLLRIEDNMES 188

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ G
Sbjct: 189 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLG 248

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +   ++A   LF
Sbjct: 249 ARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALF 308

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP    D+  LYGK F + A  +   Q    E    R I A  L++++  + FE+G+P+I
Sbjct: 309 SP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFESGYPYI 365

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +P    G +  SNLC+EI   S+              E   CNLGS+N +A
Sbjct: 366 MFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGEDISCNLGSLN-IA 422

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H      D    A TI TAVR L  V D+ +  ++      N    AIGLG M     L 
Sbjct: 423 H----TMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIGLGQMNLHGYLA 478

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG 727
              I Y SPE ++  +     +++HA+  S+ LA+ERG  ++ F+ S +  G +    + 
Sbjct: 479 REGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSRYASGAYFDKYLQ 538

Query: 728 LLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + + E      +R    LP    W +L+  +   G+ N    A+ PT +I+ I   +
Sbjct: 539 EEWQPKTERVRALFARAGIPLPDRESWRQLRDDIMRYGIYNRYLQAVPPTGSISYINHAT 598

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + + K   +G       F+ N                              
Sbjct: 599 SSIHPIVSKIEIRKEGKTGRVYYPAPFMNN------------------------------ 628

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D+L  ++  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 629 DNL-ALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGI 687

Query: 898 KTTYYLRSRSATSVEKSTLKG 918
           KT YY+R R   ++E + ++G
Sbjct: 688 KTLYYIRLRQ-LALEGTEIEG 707


>gi|31544247|ref|NP_852825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|5565930|gb|AAD45273.1|AF152114_1 ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           gallisepticum]
 gi|31541091|gb|AAP56393.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930286|gb|ADC30225.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(high)]
          Length = 722

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 269/589 (45%), Gaps = 70/589 (11%)

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 147 SGRFQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTN 206

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G++ GVIP +K+  D+    NQ G+R G   AYL   H DV  FLD +
Sbjct: 207 LREFGAPIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSK 266

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524
           +   D++ R   +     +PD+  +    N    LFSP    D+   YGK F      E 
Sbjct: 267 RENADEKIRIKSLALGLVVPDITFELAKNNEQMALFSP---YDVQREYGKPFSDIKVTEE 323

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y    +   IK    ISA   ++ +  + FE+G+P++ F D  N R+P  + G +  SNL
Sbjct: 324 YHNMVNNPRIKK-TYISARKFFQTIAELHFESGYPYLLFDDTVNNRNP--NAGRIVMSNL 380

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +S+S E               CNLGS+N+     + +    +   ++  A++ L
Sbjct: 381 CSEIVQSSTSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSAE----RFEDSVYYAIKSL 436

Query: 633 DNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           D+V    N       K  N  + A+GLG M     L    I Y SPEA+E  D     ++
Sbjct: 437 DHVSKSANLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLA 496

Query: 692 FHAISASVELA-QERGAYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTS 742
           ++A  AS  LA +++  Y++FK S +  G +        P   +    +++ E+  N   
Sbjct: 497 YYAFKASNRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIK-EIFSNYKI 555

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           ++P    W  L + +K  G+ N++ +AIAPT +I+ +   + SI P    + V+      
Sbjct: 556 KVPTQADWQALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIG 615

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                ++ +NE   +            Y DG                  A+E+ P   I+
Sbjct: 616 RVYSLAYKLNEHNYK-----------YYKDG------------------AYELGPNPYID 646

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             ++ QK +DQA SL L++ D  + + L+  Y +A+     + YY+R R
Sbjct: 647 ICAQAQKHVDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVR 695


>gi|145633335|ref|ZP_01789066.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986181|gb|EDJ92771.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 645

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 177/661 (26%), Positives = 280/661 (42%), Gaps = 76/661 (11%)

Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFY 343
           RD  F Y  ++ L  +Y +   + G   E  Q  ++ V+  L   +  KE R      FY
Sbjct: 28  RDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYLLVSASL-FSKYPKETRLDYVKRFY 86

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           +  S+F     TP +  +G R P  Q SSC L    D L  I               G+G
Sbjct: 87  DATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATASAIVKYVSQRAGIG 144

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +   +R LG+ I G      G IPF K       + +QGG R GA   Y   WH++ E 
Sbjct: 145 INAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGAATLYYPIWHLEAEN 204

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEF 518
            L L+ N G +  R   M+    +  L  +R+ +    TLFSP +V  L++ +     +F
Sbjct: 205 LLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGEITLFSPSDVPGLYEAFFADQDKF 264

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVG 577
           E  Y  YE+     +    R + AV ++  ++     TG  +I   D CN  SP    V 
Sbjct: 265 EELYVKYEQDPTIRK----RTVKAVEIFSLLMQERASTGRIYIQNVDHCNTHSPFDPQVA 320

Query: 578 VVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
            V  SNLC EI L        N  + E A+C L + NL         + D+L      AV
Sbjct: 321 PVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL-----GKIENLDELEELADLAV 375

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LD ++D   + +  AK+S+   R++G+G++ +   L    + Y+   A ++   + E 
Sbjct: 376 RSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEA 435

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +  D L         W+ L
Sbjct: 436 IQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDT---YKKDLDSLT-QEPLHYDWESL 491

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +K++  G    V     N 
Sbjct: 492 RKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIKASKDGILKQVVPEYENL 551

Query: 810 LKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +   + LWD                   IP +   +H                  QK++D
Sbjct: 552 MDNYELLWD-------------------IPSNDGYLHLVGI-------------MQKFVD 579

Query: 869 QAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGLKTTYYLRSR-SATSVEKSTLKGVD 920
           QA S N   D    E     +  + +    A+  GLKT YY  +R  A  V++    G  
Sbjct: 580 QAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQEDLDDGCA 639

Query: 921 G 921
           G
Sbjct: 640 G 640


>gi|254720035|ref|ZP_05181846.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306839413|ref|ZP_07472227.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
 gi|306405536|gb|EFM61801.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
          Length = 738

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 298/677 (44%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQILAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PIE--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|319899231|ref|YP_004159324.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
 gi|319403195|emb|CBI76754.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
          Length = 708

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 166/582 (28%), Positives = 262/582 (45%), Gaps = 67/582 (11%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R 
Sbjct: 151 FQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     +S GV+P +K+  D     NQ G R+GA   YL   H+D+ +FLD ++  
Sbjct: 211 AGAPIKKIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKREN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527
            D++ R   ++    IPD+  +    N    LFS     D+  + GK F +I+  E+Y  
Sbjct: 271 ADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRS 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             D  +I+  +KISA   ++ +  + FE+G+P+I F+D  N        G +  SNLCTE
Sbjct: 328 FVDNSKIRK-KKISARVFFQTLAEIQFESGYPYILFEDTVN--RANSIAGRISMSNLCTE 384

Query: 588 ITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   S + E               CNLGS+N+     +N F       T+  AVR L  V
Sbjct: 385 ILQVSEASELETDLTYRAVGNDISCNLGSMNIAKAMESNDF-----GKTVEIAVRALTAV 439

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ N   +    K N    AIGLG M     L    I Y +PEA++  +     +++HA
Sbjct: 440 SDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLARERIYYGTPEAIDFTNIYFYTVTYHA 499

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP---- 745
           + AS  +A+ER   +  F+ S +  G F    I    + + EL     +R    +P    
Sbjct: 500 LRASNLIARERQKMFVGFERSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPSQKD 559

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++             
Sbjct: 560 WQELKQLVTQYGLYNRYLQAVPPTGSISYINHATSSIHPIASKIEIRK------------ 607

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N         + +  A+EI P  +I++ +   +
Sbjct: 608 ------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTYAVATQ 649

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R
Sbjct: 650 HVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLR 691


>gi|307151332|ref|YP_003886716.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 7822]
 gi|306981560|gb|ADN13441.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7822]
          Length = 1105

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 241/459 (52%), Gaps = 40/459 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K++++  +G+  + N  ++  +VE AC+G +DV+   + +     + +G++  +++  LI
Sbjct: 36  KIQVIKRNGSNAALNVAKIREVVEWACAG-KDVNPIALEAGLTTRLRNGITTREIQDNLI 94

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +   +EP++  V  R  +  L ++VL         A  ++    Y +Y     E+
Sbjct: 95  NCALEMCSPEEPDWRYVAGRLHIWSLWKDVLA--------ARGYQ----YGDY-----EQ 137

Query: 263 GVKARLLHESMMDFDLVYLANDLK-------YERDFAFEYLGLQILYDRYFL-HINGSRI 314
            VK ++ ++      LVY + +L+        + D  ++Y G  +L  RY L H      
Sbjct: 138 TVKTKIENKLYDQRILVYSSQELQEAGSWINSDWDTDYDYAGAVLLTSRYLLPH------ 191

Query: 315 EMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+PQ   +  A+ LA  ET +   K A +FY  ++      +TP L N    +  L+SCF
Sbjct: 192 ELPQEALLTCALLLASVETPENRLKWARKFYEAIAKRQVSLATPILANLRIPNGSLTSCF 251

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           ++ + D+L  IF  +   A ++K  GG+G + + +R  G+ +      S GVIP++K+ N
Sbjct: 252 ISALDDNLESIFSEIANTARISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILN 311

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     I D FM+R
Sbjct: 312 DTAIAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVITDEFMRR 371

Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           V     WTL  P EV      +L +L+G+EFE  Y   E      EI ++++++A  L++
Sbjct: 372 VIHKQDWTLVDPYEVRTKFGIELAELWGEEFEKVYAKIEAAILNEEILLYKRVNARELFK 431

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            ++    ETG P++ FKD  N  +P +H G +   NLC 
Sbjct: 432 HIMRSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 68/365 (18%)

Query: 572  PQQHVGVVHS--SNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            P +H+G+ +   +  CTE   N    +E+  CNL S+NL    AN   +  +LA   + +
Sbjct: 785  PLRHLGMFNGILTGQCTESFSNVKPGQESHCCNLISLNL----AN--LEESELAEACKIS 838

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            VR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E +       E
Sbjct: 839  VRLLDNTIDLTYPPFEAAKHHNNLYRTIGVGCMGLADWLAKRRLSY---EHLTHISHLFE 895

Query: 689  FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
             I +    +S+ELA+ERGAY+ F+GS W +G      IG  ++  +    N      W +
Sbjct: 896  EIGYWCTHSSMELAKERGAYTCFEGSDWSKGQL----IG--SKPVEWFLENAHHPERWAK 949

Query: 749  LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            L   ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +   ++  
Sbjct: 950  LAADIQQYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPIAPPYI-- 1007

Query: 809  ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
               +   W         Y +       ++ D  K + A A               Q+WID
Sbjct: 1008 ---KESFW--------FYPEN------KVYDQNKVVKAIAV-------------MQQWID 1037

Query: 869  QAQSLNLYLDEPSGK----------KLDFIYRQ---AWLMGLKTTYYLRSRSATSVEKST 915
               S+ L  +   G           K   IY     AW  G K  YY+R     +V+K  
Sbjct: 1038 TGISMELLFNLNGGVYFPEDPERFLKAKDIYDTLILAWQEGCKAIYYIR-----TVQKDN 1092

Query: 916  LKGVD 920
             K  D
Sbjct: 1093 FKDTD 1097


>gi|38234437|ref|NP_940204.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200700|emb|CAE50396.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           diphtheriae]
          Length = 719

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 189/667 (28%), Positives = 306/667 (45%), Gaps = 86/667 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA    E  +  V+  
Sbjct: 98  YAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGSIELARNLVD-- 155

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + +  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 156 -EIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 214

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 215 LLSNLRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNF 274

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIA 521
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F +I+
Sbjct: 275 LDTKRENADEKIRIKTLSLGIVIPDITFELAKRNEDMYLFSP---YDVERVYGKPFADIS 331

Query: 522 YENYERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
               E  AD  E    RK  I+A + ++ +  + FE+G+P+I F+D  N  +P +  G +
Sbjct: 332 VT--ELYADMVEDPRIRKTKINARSFFQTIAEIQFESGYPYIMFEDTVNRANPIE--GRI 387

Query: 580 HSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           + SNLC+EI  +NS S            E   CNLGS+N+     +  F     A T+ T
Sbjct: 388 NMSNLCSEILQVNSPSVLNADLTYEHVGEDISCNLGSMNIAMAMDSTDF-----AKTVET 442

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V +  +  ++   KK N    AIGLG M     L   HI Y S E ++  +  
Sbjct: 443 AIRGLTAVSEQTSIDSVPSIKKGNDAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTNAY 502

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNR 740
              + +  + AS ++A ERG  +  F+ S +  G +     P D     A+V+ EL  N 
Sbjct: 503 FAAVLYQCLRASHKIAAERGQRFEGFETSDYADGSYFDRFDPADFAPKTAKVQ-ELFENS 561

Query: 741 TSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           T  +P    W+ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++    
Sbjct: 562 TIVVPTAEDWEELKQLVMKDGLFNRYLQAVPPTGSISYINNSTSSIHPIASRIEIRK--- 618

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEID 852
                                          +G IG +      + +D  + +  A+EI 
Sbjct: 619 -------------------------------EGKIGRVYYPAPHMDNDNLEYYQDAYEIG 647

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
              +I++ +   K++DQ  SL L+  D  + + ++     AW  G+K+ YY+R R   ++
Sbjct: 648 FEKVIDTYAVATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKSLYYIRLRQ-VAL 706

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 707 EGTEVEG 713


>gi|313884788|ref|ZP_07818542.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619987|gb|EFR31422.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 725

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 177/661 (26%), Positives = 298/661 (45%), Gaps = 86/661 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y+  F F+ ++G    Y++Y L  N  +  + + F  R+              A +  + 
Sbjct: 91  YDYKFRFKSFMGAHKFYNQYALKTNDGKRYL-ERFEDRIVFNALYLANGDPDFARKLRDE 149

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L +  F  +TPT  N+G  R  ++ SCFL  + DD+  I  ++     L+K  GG+G + 
Sbjct: 150 LITQRFQPATPTFLNAGRKRRGEMVSCFLIEISDDMNAIGRSINSALQLSKRGGGVGINL 209

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I      + GV+P +K+  D+    NQ G+R GA   YL  +H DV  FL 
Sbjct: 210 SNLREEGAPIKKVENAASGVVPVMKLFEDSFSYANQLGQRNGAGVVYLSVFHPDVVRFLS 269

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522
            +K   D++ R   ++    +PD F + V +NA   LFSP    D+   YG+ F  AY  
Sbjct: 270 TKKENADEKIRVKTLSLGLTVPDKFYELVAENADMFLFSP---YDVEREYGQAF--AYVN 324

Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E YE       I+ + K+ A  L  ++  +  E+G+P+I   D  N  +P    G + 
Sbjct: 325 ITEEYENMVHNPNIRKY-KVKARELENEISKLQQESGYPYIINIDTANEANPID--GRIV 381

Query: 581 SSNLCTEITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI           + S EE  +   CNLGS N++     N       A +I  A
Sbjct: 382 MSNLCSEILQVQKPSKIRDDQSYEEMGMDISCNLGSTNVV-----NMVQSPNFAQSIDVA 436

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           VR L  V D  +   +   K  N     IGLG MG  +   +  I Y S E++E+ +   
Sbjct: 437 VRALTFVTDHTSIDAVPSVKNGNELQHTIGLGAMGLHTLFAINQIDYGSDESLELTEAYF 496

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744
             ++++ + +S ++AQERG ++ +F  S +  G++    I    E++ +    + +   L
Sbjct: 497 YAVNYYTLLSSNQIAQERGQSFYNFDKSDYASGLYFDRYIDQPFEIQSDKVKEIMKGIHL 556

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           P    W  LK++V+  G+ ++   AIAPT +I+ +   S S+ P                
Sbjct: 557 PTAEDWQALKEKVQAHGLYHAYRQAIAPTGSISYVNETSASLHP---------------- 600

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                ++  +++R    E       Y    + N      D    + + ++ID   +I+  
Sbjct: 601 -----IIRLIEER---QEKKTGKTYYPAPYLSN------DTIDYYKSVYDIDMRLVIDVY 646

Query: 861 SRRQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLR 904
           +  QK IDQ  S+ L++  + PSG              + L+ +   AW  G+K+ YY+R
Sbjct: 647 AAAQKHIDQGMSMTLFMRSEIPSGLYPWKKADDNKLTTRDLNILRNYAWNQGIKSIYYVR 706

Query: 905 S 905
           +
Sbjct: 707 T 707


>gi|292489179|ref|YP_003532066.1| ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           amylovora CFBP1430]
 gi|292900296|ref|YP_003539665.1| ribonucleoside-diphosphate reductase 2 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291200144|emb|CBJ47270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Erwinia
           amylovora ATCC 49946]
 gi|291554613|emb|CBA22272.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           CFBP1430]
          Length = 716

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 176/644 (27%), Positives = 290/644 (45%), Gaps = 67/644 (10%)

Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           R F F+ +LG    Y  Y L   +G R    ++F  RV M         +  A+   + +
Sbjct: 97  RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLESFTERVCMVALTLAKGDQPLALALADEI 154

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ L   +  I+ + +
Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVERIYALPFADISISEKYH 334

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  AD    + F  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +N+ +E           +   CNLGS+N+ AH      D    A T+  AVR L 
Sbjct: 391 SEILQVNTPTEYNDDLSYRHIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 445

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++
Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTY 505

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743
           HA+  S +LA+ER   +S F  S +  G +    +G         +A +  +  +   ++
Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQ 565

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK+ V   G+ N N  AI PT +I+ I   + SI P                   
Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V+ ++ R       +    Y+     N     +D +  +  A++I P  +I++ +  
Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYAEA 655

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699


>gi|157325078|ref|YP_001468503.1| gp123 [Listeria phage A511]
 gi|66733086|gb|AAY52904.1| gp123 [Listeria phage A511]
          Length = 466

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/384 (34%), Positives = 199/384 (51%), Gaps = 21/384 (5%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLLH 270
           P +    AR  L++L        YKK  K   ++    Y  Y   +    + G+ +  + 
Sbjct: 92  PEWEFFAARLYLQRL--------YKKASKNRFYDAIMKYGSYVGLHESLAQRGIYSVDIL 143

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLA 329
           E     +L+     +   +D  F Y GL +L  RY       ++ E+PQ  ++ +A+ L 
Sbjct: 144 EKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERWLTIALFLM 203

Query: 330 LKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
             E E   + VE  Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  
Sbjct: 204 QDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNT 263

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A ++K  GG+G     VR  GA I G  G S G +P++K  N+TAV+V+Q G RKGA+
Sbjct: 264 DVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQLGARKGAI 323

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              L+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V     W LF P EV 
Sbjct: 324 TVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWYLFDPYEVK 383

Query: 509 D-----LHDLYGKE--FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
                 L D Y KE    +  E YE     G I   +++ A+ + ++++    ETG P++
Sbjct: 384 QKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK-KRVKALDIMKRIMISQLETGTPFM 442

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLC 585
            ++D  N  +P  H G++++SNLC
Sbjct: 443 FYRDTVNRANPNSHAGMIYASNLC 466


>gi|300718017|ref|YP_003742820.1| ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
 gi|299063853|emb|CAX60973.1| Ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
          Length = 702

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 183/659 (27%), Positives = 296/659 (44%), Gaps = 71/659 (10%)

Query: 276 FDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKE 332
           F+ V    +  Y+R F F+ +LG    Y  Y L   +G R    + F  RV M  L L +
Sbjct: 70  FEFVSSLFEQAYQRRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAK 127

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            ++   A+     + S  F  +TPT  N G +   +L SCFL  + D++  I  ++    
Sbjct: 128 GDR-SLALSLMEEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRSVNSAL 186

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 187 QLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVY 246

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 247 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKTNQQMALFSPYDVERIY 306

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            L   +  I+ +  E  AD    + F  I+    ++ +  + FE+G+P+I F+D  N  +
Sbjct: 307 GLPFADISISEKYEEMLADDRITRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRAN 364

Query: 572 PQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G ++ SNLC+EI  +N+ +E           +   CNLGS+N+ AH      D  
Sbjct: 365 PIK--GRINMSNLCSEILQVNTPTEYNDDLSYRRIGKDISCNLGSLNI-AH----TMDSP 417

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             + T+  AVR L  V D  + H++   ++ N    AIGLG M     L    I Y S  
Sbjct: 418 DFSRTVEIAVRGLTAVSDQSHIHSVPSIERGNAQSHAIGLGQMNLHGYLAREGIQYGSEV 477

Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A++  +     I++HA+  S  +AQERG  ++ F+ S +  G +    +    + R    
Sbjct: 478 ALDFTNLYFYTITYHALRTSNLMAQERGERFAGFEESRYASGEYFAQYVEQRWQPRTPEV 537

Query: 738 MNRTSR----LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +R    LP    W EL++ V   G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 538 AALFARAGITLPGQKEWRELREAVMKHGIYNQNLQAIPPTGSISYINHATSSIHPIVSRI 597

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + K   +G       F+ N                               D +  +  A
Sbjct: 598 EIRKEGKTGRVYYPAPFMNN-------------------------------DNQAFYRDA 626

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 627 YDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTLYYIRLR 685


>gi|320353411|ref|YP_004194750.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
 gi|320121913|gb|ADW17459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
          Length = 723

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 172/649 (26%), Positives = 287/649 (44%), Gaps = 93/649 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLA---LKETEKEKRAVEFYNLLSSFHFMCST 355
           +L  RY+L    G  +E  +    RV+  +A   L + + E  A  F+ ++    F+ ++
Sbjct: 17  VLERRYYLKDAEGKPLENWETLCRRVSNAVAQVDLDQPDYEGLADRFFTMIYYLDFLPNS 76

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N+GT   QLS+CF+  V D + GIF +++  A++ K  GG G  ++ +R   + + 
Sbjct: 77  PCLMNAGTDLGQLSACFVLPVEDSMDGIFTSIRNGALVHKTGGGTGYSFSRLRPKNSAVQ 136

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T G + G + F  V +     + QGGKR+GA    L   H D+ EF+  ++    D+ R
Sbjct: 137 STQGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDILEFIVAKQ----DQTR 192

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +  I DLFM+ V  +  + L  P                           G+I 
Sbjct: 193 YTNFNFSVAITDLFMEAVKNDQEYDLIDPSN-------------------------GDI- 226

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             R + A  ++ K++ + +  G P + F D  N  +    +G   ++N C E  L     
Sbjct: 227 -IRTLRAREVFDKIVDLAWHNGEPGVLFIDAANRDNTTPQLGKFEATNPCGEQWLLPYES 285

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNLGSINL  +  N + D+++L +T R AVR LDNVID N   I +  +     R 
Sbjct: 286 ----CNLGSINLGQYVKNGKVDWERLGATARLAVRFLDNVIDCNRFPIPEIAEMTQKTRK 341

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MG    L  L +PY S E  + A E M F+   A +AS+ELA  +G + ++    
Sbjct: 342 VGLGIMGLHDMLIQLELPYGSEEGRQAAAEVMAFVRTEAEAASIELATMKGPFPAY---- 397

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                             DE    R +  P             RN+   +I PT T++ I
Sbjct: 398 ------------------DE----RFNTYP-----------ARRNAALTSIQPTGTVSMI 424

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              +   +P +  + +K+ M  D  ++ + L   + + + +  A + +     G++    
Sbjct: 425 ADCASGCEPYFSIVMIKNVMDNDRLLMVNKLFERIARAEGFYSAELMEKVAKSGTVIGHA 484

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
            IP   ++I  TA +I P   I      QK  +D + S  + L  PS    D + R A++
Sbjct: 485 AIPKRWQEIFRTAQDISPEQHIRMQGVLQKNGVDSSISKTINL--PSSATQDDV-RTAYM 541

Query: 895 MGLK------TTYYLRSRS-------ATSVEKSTLKGVDGKLNAVPVTD 930
           +G +      T Y   SR        A+S +K+ + G +G +    + D
Sbjct: 542 LGFELGCKGLTVYRDGSRDHQVLNTVASSADKTAVAGSEGLVQKATLPD 590


>gi|184200806|ref|YP_001855013.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
 gi|183581036|dbj|BAG29507.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
          Length = 719

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 186/660 (28%), Positives = 296/660 (44%), Gaps = 72/660 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G R +E  +   + V++ LA  +    KR V   
Sbjct: 98  YGYKFRFQTFLGAFKFYTSYTLKTFDGQRYLERFEDRVVMVSLYLADGDETLAKRLV--- 154

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G +   +L SCFL    D++  I   +     L+K  GG+  
Sbjct: 155 GEIISGRFQPATPTFLNAGKKQRGELVSCFLVRFEDNMESIGRNINSALQLSKRGGGVAF 214

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 215 ALTNLRESGAPIKMIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILNF 274

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  ++ 
Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNQDMYLFSPYDVERIYGMPFADVNVS- 333

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D   I    KI+A   ++ +  + FE+G+P+I F+D  N  +P    G +  S
Sbjct: 334 EKYHEMVDDSRITK-TKINAREFFQTVAEVQFESGYPYIMFEDTVNRANPID--GKIIMS 390

Query: 583 NLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   S               +   CNLGS+N+     +  F      ++I TA+R
Sbjct: 391 NLCSEILQVSEPSVYNEDLTYAEVGKDISCNLGSMNIAMAMESPDF-----GASIETAIR 445

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ N  ++   ++ N    A+GLG M     L   H+ Y S E V+  +     
Sbjct: 446 GLTAVSDMSNIDSVPSIRRGNQMSHAVGLGQMNLHGYLAKEHVFYGSEEGVDFTNMYFYA 505

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDSIGLLAEVR-DELAMNRTSRL 744
           +++HAI AS  +A+ERG ++  F+ S +  G +    ID     A  R  EL       L
Sbjct: 506 VTYHAIRASNLIAKERGESFVGFEKSDYANGTYFDKYIDGTWEPATARVRELFARAGVAL 565

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W EL+++V   GM N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 566 PTAQDWRELREKVMADGMYNQNLQAVPPTGSISYINNSTSSIHPIASRIEIRKEGKLGRV 625

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ +E                       N+E   D        A+EI    +I++
Sbjct: 626 YYPAPFMNDE-----------------------NLEYFQD--------AYEIGFEKIIDT 654

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY R R   ++E + ++G
Sbjct: 655 YAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTMYYSRIRQ-LALEGTEVEG 713


>gi|254699598|ref|ZP_05161426.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 738

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 188/676 (27%), Positives = 302/676 (44%), Gaps = 82/676 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     +V++++ R    E  I  + Y    + N     D+L +
Sbjct: 628 P---------------------IVSKIEIR---KEGKIGRVYYPAAFMAN-----DNL-E 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LRSRSATSVEKSTLKG 918
           +R R   ++E + ++G
Sbjct: 718 IRLRQ-MALEGTQVQG 732


>gi|66732767|gb|AAY53358.1| gp55 [Listeria phage P100]
          Length = 449

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 13/368 (3%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRY---IEEGVKARLLHESMMDFDLVYLANDLK 286
           R  L  +YKK  K   +++   Y  Y   +    + G+ +  + E     +L+     + 
Sbjct: 83  RLYLQRLYKKASKNRFYDVIMKYGSYVGLHESLAQRGIYSVDILEKYSREELMEAETFID 142

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVE-FYN 344
             +D  F Y GL +L  RY       ++ E+PQ  ++ +A+ L   E E   + VE  Y 
Sbjct: 143 SSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERWLTIALFLMQDEKENRMKLVEEAYW 202

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K  GG+G   
Sbjct: 203 ALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKQGGGVGVYI 262

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR  GA I G  G S G +P++K  N+TAV+V+Q G RKGA+   L+ +H D+E FLD
Sbjct: 263 GNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQLGARKGAITVTLDVFHKDIEAFLD 322

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-- 517
           LR N GD R R HD+ T+  IPDLFM+ V     W LF P EV       L D Y KE  
Sbjct: 323 LRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWYLFDPYEVKQKKGWYLQDYYDKEKG 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             +  E YE     G I   +++ A+ + ++++    ETG P++ ++D  N  +P  H G
Sbjct: 383 SGLFREKYEELIQDGTISK-KRVKALDMMKRIMISQLETGTPFMFYRDTVNRANPNSHAG 441

Query: 578 VVHSSNLC 585
           ++++SNLC
Sbjct: 442 MIYASNLC 449


>gi|1710389|sp|P50642|RIR1_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|515832|emb|CAA53100.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 789

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 296/663 (44%), Gaps = 68/663 (10%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340
           LGLQ  + Y+  +L  + G R+E    FF+R+A        E+   A             
Sbjct: 131 LGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTATHYTMEQPAMARVLVSGEVGWTYI 190

Query: 341 --EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              F+  L+    + +TP +   G     ++SC+L    V D    I   ++E   +   
Sbjct: 191 FRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCN 250

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G           +   T G S+GV+  LK+ +   +A+N  G+R   VC Y E WH
Sbjct: 251 RGGIGLSLQRF-----NTPPTEGCSRGVMALLKLLDSMTMAINSDGERPTGVCVYFEPWH 305

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR----VTQNAG--WTLFSPDEVSD 509
            D+   L++R     D+  R  ++    W PDLF  R    V   +G  WTLF  D  S 
Sbjct: 306 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLFD-DTASH 364

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN- 568
           L  +YG +F   YE  ER     +    + ++ + +   ++     TG P++ FKD CN 
Sbjct: 365 LCHMYGNDFTREYERLERCGFGIDAIPIQDMAFIIVRSAVM-----TGSPFLMFKDACNR 419

Query: 569 -IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANN-----QFDYD 619
                 +  G +  SNLCTEI  ++   +  VCNL SINL   LA    N      FD+ 
Sbjct: 420 HYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLALPPPNIAGVPYFDFA 479

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L     TA   ++ ++  + +   K++K    +R++GLG+ G  +   +L +  ASPEA
Sbjct: 480 ALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEA 539

Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++  +  E +  +++ AS  L +     +  F+ S + +G  P D+            +
Sbjct: 540 HQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYP---------NV 590

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+
Sbjct: 591 TLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853
               N  L+  ++     + A +  L   + +  ++     DL   H      TAFE D 
Sbjct: 651 VLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYDQ 710

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907
             LI   + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + 
Sbjct: 711 TMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKK 770

Query: 908 ATS 910
           AT+
Sbjct: 771 ATN 773


>gi|296118679|ref|ZP_06837255.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968168|gb|EFG81417.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 723

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 182/647 (28%), Positives = 289/647 (44%), Gaps = 68/647 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ +LG    Y  Y L     R  + + F  RV+M            A    + 
Sbjct: 101 YSFKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDE 159

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    
Sbjct: 160 IMSGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLL 219

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD
Sbjct: 220 SNIRESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLD 279

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY- 522
            ++   D++ R   ++    IPD+      +N    LFSP    D+  +YGK F +I+  
Sbjct: 280 TKRENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSP---YDVERVYGKPFGDISVT 336

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E+Y    +   I   +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ S
Sbjct: 337 EHYAEMVEDPRITK-KKINARHFFQTVAELQFESGYPYIMFEDTVNDANPVK-TGRINMS 394

Query: 583 NLCTEI-TLNSSSEETA-----------VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI  +NS S   A            CNLGS+N+         D    + T+  A+R
Sbjct: 395 NLCSEILQVNSPSSFNADLSYEQMGSDISCNLGSMNIAL-----AMDSPDFSGTVEAAIR 449

Query: 631 VLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     
Sbjct: 450 GLTAVADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAA 509

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNR 740
           + + A+ AS ++A+ERG  +S FK S +  G F     P +      +V+   A   ++ 
Sbjct: 510 VMYAALRASNKIAKERGETFSEFKDSEYASGAFFDRYDPAEFAPQTDKVKALFADSTIHT 569

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            S   W +LK +V   G+ N N  A+ PT +I+ I   + SI P    + ++        
Sbjct: 570 PSAEDWADLKAQVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------- 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N     D+L      A+EI    +I++ 
Sbjct: 623 -----------------EGKIGRVYYPAPHMDN-----DNLDYFQ-DAYEIGHEKIIDTY 659

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 660 AIATKYVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLR 706


>gi|265985044|ref|ZP_06097779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264663636|gb|EEZ33897.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 713

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 298/677 (44%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQILAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P +  G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PIE--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 692 YIRLRQ-MALEGTQVQG 707


>gi|255683174|ref|YP_003084382.1| UL39 [Duck enteritis virus]
 gi|158343205|gb|ABW35295.1| ribonucleotide reductase subunit 1 [Anatid herpesvirus 1]
 gi|254839989|gb|ACT83535.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 173/601 (28%), Positives = 274/601 (45%), Gaps = 60/601 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAKYS 397
           F+  LSS   + +TP +   G      +SC+L    TT  DD   +   L E A + +  
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDT--VRSILNEVAPILQSR 278

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G        +  H    N +S+G++  LK+ +   +A+N    R   VC Y+E WH 
Sbjct: 279 GGVG--------IALHTLNQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHA 330

Query: 458 DVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510
           D    L ++     ++  R   + +A W+PDL  KR        ++  WT F  D  S+L
Sbjct: 331 DTRAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNL 389

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             LYG  FE  YE YE      +    R++   ++ R   T    TG P+I  KD  N  
Sbjct: 390 SKLYGDRFEREYEYYESSGFGVDSIPIREM-MYSIVRSAAT----TGSPFIVLKDAFNRH 444

Query: 571 -SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLAST 624
                    +  SNLCTEI   +  +   VCNL SINL     +      +FD   L   
Sbjct: 445 YHLDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRA 504

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTA   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++  
Sbjct: 505 VRTATIFVNAMMLCNDYPTEKSRAGMERHRSIGIGLQGLHTTFLRLGLDMVCDEARKLNK 564

Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
              E +   A++ S EL  E G   +S F  S++  G F  D         +++ +  T 
Sbjct: 565 RIAELMLLEAMTTSCELC-EHGLPKFSDFDESIYSSGRFHFDGW-------EDVEL--TE 614

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  WDEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    
Sbjct: 615 QYEWDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRP 674

Query: 803 NSFLVNELK-----QRDLWD--EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           N  L+ EL+     ++D  +  EA+ S       + GN       +K  + T FE + + 
Sbjct: 675 NPLLMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQID 732

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L+     R  ++D +QS +LY+ E S        +  +   A+  GLKT  YY R R AT
Sbjct: 733 LLNMCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKAT 792

Query: 910 S 910
           +
Sbjct: 793 N 793


>gi|284504237|ref|YP_003406952.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
 gi|282935675|gb|ADB03990.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
          Length = 916

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 186/342 (54%), Gaps = 20/342 (5%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH- 308
           PE F + + +G+K+ +L E   +F   +   L N   +ERD  F+++ +  L   Y L  
Sbjct: 71  PEKFSQ-MAKGMKS-VLDEKFYEFVASHSQELDNICSHERDNRFDWMAINTLEKSYLLKK 128

Query: 309 --INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
              +G     E PQ  ++RVA  L + + +K K   EFY+ LS   +  ++P  FN+G +
Sbjct: 129 KCFDGKLRVFERPQHMYLRVATQLWMPDVQKIK---EFYDGLSLGFYTVASPIFFNAGLK 185

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               SSCFL  +PDDL GI    ++ A+++  SGG+G   + VR   + I G  G+S GV
Sbjct: 186 KFSGSSCFLGKIPDDLIGIIDTWKQMAIISSRSGGVGYSASSVRH--SDIGGGLGESSGV 243

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  L+V +     V+QGG+RKG+   +L  WHID+  F+D +K  GDD ++   +  A W
Sbjct: 244 VSLLRVPDAVLGYVDQGGRRKGSGTFFLACWHIDIFTFVDAKKPGGDDLKKARQLFYAIW 303

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
             DLFMKRV  +  W+LF P E   L ++YGK+FE  YE YE++      +    + A  
Sbjct: 304 TSDLFMKRVETDGNWSLFCPKEAPGLDEIYGKDFEDLYERYEKEG-----RARTTVKAQE 358

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           LW  +L    E G P+I +KD    ++ Q+H G+ HS NLC 
Sbjct: 359 LWHHILVAQAEVGMPFIVYKDAICRKNNQKHTGIPHSLNLCV 400



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 177/367 (48%), Gaps = 54/367 (14%)

Query: 585 CTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C EIT N+S EE A CNL S+  N      + ++D+  LAS++R  VR L+NV+D N + 
Sbjct: 538 CLEITENTSDEEIASCNLSSVCLNSFVDKESKKYDFGALASSVRFIVRSLNNVVDRNYYP 597

Query: 643 IE--KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            E    K +N  HR +G+G+ G      ++ I +   EA  +  +  E +   A++ S +
Sbjct: 598 SELPSIKTTNLRHRPLGIGVQGLADTFAMMDICWGDEEARNLNRKIFETMYHAAVTESRK 657

Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL---- 749
           +++ER +       Y +F GS   +G F  D       + D  A+++ S +P+D +    
Sbjct: 658 ISKERASLGFQTPYYETFPGSPLSKGFFAHD-------LWDAEALHKESGIPFDSITVEQ 710

Query: 750 --------------------KKRVKTI--GMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                               K+R++T+  G+ NS  +A+ PTA+ A I   ++S +    
Sbjct: 711 VKSYRKKKGIPESFCGFDWDKERLETMRDGVYNSLLIALMPTASTAQILRNNESFEAFTS 770

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI--------ERIPD 839
            +  ++ +SG F VVN   ++++    +W++  +       GS+  I        ER+ +
Sbjct: 771 IIGKRTVLSGAFAVVNRHFIDDMIGLGVWNKKNMLICLKGQGSVQGITTDDITKFERL-E 829

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
            +K+ +  AFE+    L +    R +++ Q+ S N ++  P+ +KL   +   W  G KT
Sbjct: 830 HIKRKYLNAFELSQKRLCQLGIDRSRYVCQSSSHNCFMRNPTYQKLTSYHFFQWENGAKT 889

Query: 900 -TYYLRS 905
             YYLR+
Sbjct: 890 GMYYLRT 896


>gi|297249810|ref|ZP_06933511.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|297173679|gb|EFH33043.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
          Length = 722

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 90  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 149

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 150 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 206

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 207 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 266

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 267 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 326

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 327 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 384

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 385 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 437

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 438 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 495

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 496 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 552

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 553 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 611

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 612 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 645

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 646 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 700

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 701 YIRLRQ-MALEGTQVQG 716


>gi|311992968|ref|YP_004009835.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
 gi|295815257|gb|ADG36183.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
          Length = 750

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 204/756 (26%), Positives = 332/756 (43%), Gaps = 84/756 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETA 201
           +K++   G    F+  ++  ++  A  G++   D+    +      ++ D ++ S+++ A
Sbjct: 1   MKVIKSSGIAQEFDQNKIMQVLNWALEGIEFTSDIDVYDLFDRIIPHLKDEMTTSEIQDA 60

Query: 202 LI-FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           ++  ++ ++  +E +Y  V +      LR+ V       P K   H         +   I
Sbjct: 61  IVKVAADSITLEEQDYQYVASNLAQFGLRKAVFGQF--DPPKFIDHVTSVTAHGLYDSEI 118

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQ 318
                  LL  S  +F+ +  A D  + RDF F Y G   L D+Y +     G   E PQ
Sbjct: 119 -------LLKYSPAEFEELEEAID--HSRDFTFTYAGTCQLMDKYLVKDRSTGKIYETPQ 169

Query: 319 AFFMRVAMGLALKETEKEK-RAV-EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLT 374
             FM + M L   E +  + +AV EFY  +S+      TP +  +G R P  Q SSC + 
Sbjct: 170 FAFMLIGMCLHQDEDKSTRLQAVKEFYEAVSTRKISLPTPIM--AGVRTPTRQFSSCVVI 227

Query: 375 TVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
              D L  I  A   N+ + KY     G+G +   +R  G+ I     K  GV+PF K  
Sbjct: 228 ESGDSLDSINDA---NSAIVKYVSKRAGIGINAGMIRAEGSKIGPGEVKHTGVVPFWKHF 284

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           N      +QGG RKG+   +   WH++VE  + L+ N G +  R   M+    I +L ++
Sbjct: 285 NSAVHCCSQGGIRKGSATMFFPMWHLEVENLIVLKNNKGVEENRIRHMDYGLQINELLIE 344

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R   N   TLFSPD   +L+D Y    + F   YE+ E+Q     +   +++ A  LW +
Sbjct: 345 RYINNDYITLFSPDAHPELYDSYFSNPERFREIYEDLEKQP----LVRKKRMKARTLWEE 400

Query: 549 ML-TMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCN 601
           M  T    T   + +F D  N   P  + +  V  SNLC EI L++        E A+C 
Sbjct: 401 MFATERANTARIYPSFVDNINEYGPWIREIAPVRQSNLCMEIALHTKDIGREDGEIALCT 460

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L +  L +    NQ + +++A  +   VR LDN++D   +  EKA  S   +R++G+G+ 
Sbjct: 461 LSAFVLDSFDWKNQDEINRIAMVM---VRSLDNLLDYQDYPHEKA-LSAKEYRSLGVGVT 516

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            + + L      Y   +A EI  E  E + +  I AS++LA+E+G       + + QG  
Sbjct: 517 NYAAWLASNSASYN--DANEITHELFERLQYALIKASIQLAKEKGPSPRLYMTKYGQGKL 574

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID         DEL +     L W+ L++ +   GMRN+   A+ P  + + +   +  
Sbjct: 575 PID---WYRPSVDEL-VEPVYVLDWEALREDLILYGMRNTTLSAMMPCESSSQVSNSTNG 630

Query: 782 IDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           ++P    + VKS+  G F  VV ++  N+L     W+ A   +  Y              
Sbjct: 631 LEPPRGPVSVKSSKGGAFNQVVPNYAENQLFYDFAWELAKTGNKGY-------------- 676

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           +   S  QKW DQA SLN Y
Sbjct: 677 ----------------LTQCSIIQKWNDQAISLNTY 696


>gi|256157978|ref|ZP_05455896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|256253063|ref|ZP_05458599.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
          Length = 738

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|300776392|ref|ZP_07086250.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501902|gb|EFK33042.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 552

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 172/594 (28%), Positives = 266/594 (44%), Gaps = 110/594 (18%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A K   K +    F  +++      S+P   N GT+     SCF   +PD + GI   + 
Sbjct: 41  AAKRLYKPELQPAFKEMITKGWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMG 100

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  M  K  GG    +  +R  G  +   NGKS G + F+K+ +     V+QGG R+GA 
Sbjct: 101 EVIMQTKIGGGTSGYFGELRNRGTAVT-DNGKSSGAVSFMKLFDTAMDVVSQGGVRRGAF 159

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            AYL+  H D+EEFL ++    D      ++ T   +PD +M+                 
Sbjct: 160 AAYLDIDHGDIEEFLSIK----DIGSPIQNLFTGVCVPDYWMQ----------------- 198

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D+ D                   G+++  RK+     W ++L    + G P+I F D  N
Sbjct: 199 DMID-------------------GDMEK-RKV-----WARVLESRQQKGLPYIFFTDNVN 233

Query: 569 IRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
              PQ  + +G+ V++SNLC+EI L S+ EE+ +C L S+NL        +D  K    +
Sbjct: 234 RNKPQVYKDLGMTVNASNLCSEIMLPSTMEESFICCLSSMNL------ELYDEWKDTDAV 287

Query: 626 RTAVRVLDNVIDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           + A+  LD V+          + ++ A+     HRA+GLG++G+ S L    IP+ S EA
Sbjct: 288 KLAIYFLDAVLSEFIDKTEGNYYLQGARNFAMRHRALGLGVLGYHSYLQKNMIPFESFEA 347

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            +    +   I   A  AS ELA   G     KG                          
Sbjct: 348 TQFNARAFRHIKEQAEQASRELANIYGEPEVLKG-------------------------- 381

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798
                            G+RN+  MAIAPT + + I G  S  I+P   N Y      G+
Sbjct: 382 ----------------YGLRNTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGN 425

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F   N +L   L+++ L +E     +  + GS+ ++  +  + K +  T  EI PM +I 
Sbjct: 426 FMRKNKYLAKLLEEKGLDNEETWRTIMLNHGSVQHLNELTPEEKAVFKTFKEISPMEIIS 485

Query: 859 SASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            A++RQ++IDQAQSLNL +  PS    K ++++Y +AW  G+KT YY RS S +
Sbjct: 486 QAAQRQQYIDQAQSLNLQI--PSTMPVKDVNYLYIEAWKKGVKTLYYQRSSSVS 537


>gi|213963757|ref|ZP_03392007.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
 gi|213953637|gb|EEB64969.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
          Length = 551

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 169/584 (28%), Positives = 257/584 (44%), Gaps = 116/584 (19%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  +++      S+P   N GT      SCF   VPD + GI   L E  M  K  GG  
Sbjct: 53  FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EE
Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL ++    D      ++     +PD +M+ +                            
Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578
                     G+++  R      LW ++L    + G P+I F D  N   PQ +     +
Sbjct: 202 ----------GDVEKRR------LWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMI 245

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + SSNLC+EI L SS +E+ +C L S+NL        FD  K    ++ AV  LD V+  
Sbjct: 246 IRSSNLCSEIMLPSSEDESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLS- 298

Query: 639 NCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
               IEK K + +          HRA+GLG++G+ S L    IP+ S EA +    + ++
Sbjct: 299 --EFIEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFKY 356

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A  A+ ELA   G     KG                                    
Sbjct: 357 IREEAEKATKELAHIYGEPEVLKG------------------------------------ 380

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L  
Sbjct: 381 ------YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQ 434

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L+++ L +E +   ++ ++GS+ +++ +    K +  T  EI PM +I  A++RQ +ID
Sbjct: 435 LLEEKGLNNEDVWRSIRLNNGSVQHLQELTQQEKNVFKTFKEISPMEIISQAAQRQAYID 494

Query: 869 QAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           Q QSLNL +  PS    K ++ +  +AW +G+K+ YY RS+S  
Sbjct: 495 QTQSLNLNI--PSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVA 536


>gi|221134588|ref|ZP_03560893.1| ribonucleotide-diphosphate reductase subunit alpha [Glaciecola sp.
           HTCC2999]
          Length = 773

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 202/791 (25%), Positives = 336/791 (42%), Gaps = 87/791 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A   L +VS   V  + +   +DG+S   +   LI
Sbjct: 4   QLSVTKRDGVTEAIDLDKIHKVITWAAKDLHNVSVSQVEIKAHIQFFDGISTEVIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + P+Y  + AR  +  LR++     ++ P+   H +      +Y     +E
Sbjct: 64  KSAADLISTDSPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFDHVKSMVERGKY-----DE 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
            + A    E     D       L + RD  F Y  ++ L  +Y +   ++G   E  Q  
Sbjct: 118 HLLADYTAEEFEAMD-----GFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L      K  R      FY+ +S F     TP +  +G R P  Q SSC L  
Sbjct: 173 YVLVAACL-FANYPKATRLDYIKRFYDAVSLFKISLPTPIM--AGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 AGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N   TLFSP +V  L+D +  + +   E Y +  +   I+  + I A+ L+   +     
Sbjct: 350 NQNITLFSPSDVPGLYDAFFADQDKFDELYVKYENDPSIRK-KSIKAMELFSLFMQERAS 408

Query: 556 TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETAVCNLGSIN 606
           TG  ++   D CN  SP    V  V  SNLC EI L +           E A+C L + N
Sbjct: 409 TGRIYLQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLEHVMDPEGEIALCTLSAFN 468

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  +      D+L      AVR LD+++D   + +  A+ ++   R +G+G++ F   
Sbjct: 469 LGAIKS-----LDELEELADLAVRALDSLLDYQDYPVPAARNASLGRRTLGIGVINFAYY 523

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A  +  ++ E I ++ + AS  LA E+G    F  + + QG+ PID+ 
Sbjct: 524 LAKNGVKYSDHSANGLIHKTFEAIQYYLMKASNNLAIEQGPCPLFNETTYSQGLMPIDTY 583

Query: 727 GL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  + DE        L WD L++ V   G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 584 KKDIDNICDE-----PLHLDWDSLRESVVKHGLRNSTLSALMPSETSSQISNATNGIEPP 638

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             ++ +KS+  G   V+   + +    +D ++  ++ DL  +DG                
Sbjct: 639 RGHISIKSSKDG---VLKQVVPDYENLKDKYE--LLWDLPSNDG---------------- 677

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKL-------DFIYRQAWLM 895
                      ++  +  QK++DQ  S N   D PS   G K+       D +    + +
Sbjct: 678 ----------YLQLCAIMQKFVDQTISANTSYD-PSKYEGNKVPMKLLIKDLL--TTYKL 724

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 725 GIKTLYYHNTR 735


>gi|260904663|ref|ZP_05912985.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacterium
           linens BL2]
          Length = 718

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 171/612 (27%), Positives = 279/612 (45%), Gaps = 74/612 (12%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA  L L + + E+ A    + + S  F  +TPT  N+G  +  +L SCFL  V D+L  
Sbjct: 135 VATALYLGQGD-EQLATGLVDEMLSGRFQPATPTFLNAGKAQRGELVSCFLLRVEDNLES 193

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    + +R  GA I     ++ GV+P +K+  D+    NQ G
Sbjct: 194 IGRSVNSALQLSKRGGGVALLLSNLREAGAPIKQIENQASGVVPVMKILEDSFSYANQLG 253

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LF
Sbjct: 254 ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFQLAKDNRDMHLF 313

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V   +     +  ++ ++Y+      +I+    +SA   +R +  + FE+G+P++ 
Sbjct: 314 SPYDVQREYGTPLSDLSVS-DHYDELVANPQIRK-NTVSAREFFRTLAELQFESGYPYVL 371

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI--TLNSSSEETAV----------CNLGSINLLAH 610
           F+D  N  +P    G ++ SNLC+EI  T   S+ + A+          CNLGS+N+   
Sbjct: 372 FEDTVNRANPL--AGHINMSNLCSEILQTNTPSTYDNAIGYQEIGQDISCNLGSLNIAQ- 428

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
            A N  D   L ST+ TAVR L +V D  N   +    K N    AIGLG M     L  
Sbjct: 429 -AMNSSD---LGSTVETAVRALTSVSDQTNVDAVPSVAKGNDASHAIGLGQMNLHGYLAS 484

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723
             I Y S E ++  D     I++HAI AS ++A ERG  ++ F+ S +  G +       
Sbjct: 485 QRIHYGSEEGIDFTDIYFLTITYHAIRASNQIAIERGKTFAGFEDSTYADGSYFDKYTQH 544

Query: 724 DSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           D       VR EL  +    +P    W+ L++ VK  G+ N+   A+ PT +I+ +   +
Sbjct: 545 DWQPATQRVR-ELFADAGVTIPAGEDWERLRESVKAQGIYNAYLQAVPPTGSISYVNNST 603

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----E 835
            SI P    + ++                                   +G +G +     
Sbjct: 604 ASIHPVAAKIEIRK----------------------------------EGKLGRVYYPAP 629

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            + DD    +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW 
Sbjct: 630 HMTDDNVDFYQDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDTATTRDINRAQIYAWR 689

Query: 895 MGLKTTYYLRSR 906
            G+KT YY+R R
Sbjct: 690 KGIKTLYYIRLR 701


>gi|17989275|ref|NP_541908.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|189023016|ref|YP_001932757.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237817304|ref|ZP_04596296.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|254691264|ref|ZP_05154518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254695434|ref|ZP_05157262.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|254699052|ref|ZP_05160880.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254702721|ref|ZP_05164549.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706145|ref|ZP_05167973.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|254711556|ref|ZP_05173367.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|254712153|ref|ZP_05173964.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|254715224|ref|ZP_05177035.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|254732498|ref|ZP_05191076.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|256029808|ref|ZP_05443422.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|256043235|ref|ZP_05446172.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256111773|ref|ZP_05452744.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|256256450|ref|ZP_05461986.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|256262716|ref|ZP_05465248.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260544999|ref|ZP_05820820.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260564447|ref|ZP_05834932.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568372|ref|ZP_05838841.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|17985138|gb|AAL54172.1| ribonucleoside-diphosphate reductase alpha chain [Brucella
           melitensis bv. 1 str. 16M]
 gi|189021590|gb|ACD74311.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus S19]
 gi|237788117|gb|EEP62333.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|260098270|gb|EEW82144.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260152090|gb|EEW87183.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260155037|gb|EEW90118.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|263092504|gb|EEZ16757.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410494|gb|ADZ67558.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326553786|gb|ADZ88425.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M5-90]
          Length = 738

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|261750055|ref|ZP_05993764.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261739808|gb|EEY27734.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 713

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 188/676 (27%), Positives = 302/676 (44%), Gaps = 82/676 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     +V++++ R    E  I  + Y    + N     D+L +
Sbjct: 603 P---------------------IVSKIEIR---KEGKIGRVYYPAAFMAN-----DNL-E 632

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 633 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 692

Query: 903 LRSRSATSVEKSTLKG 918
           +R R   ++E + ++G
Sbjct: 693 IRLRQ-MALEGTQVQG 707


>gi|317049231|ref|YP_004116879.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950848|gb|ADU70323.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 712

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 186/663 (28%), Positives = 295/663 (44%), Gaps = 77/663 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE 332
           DF+ +   +D      F F  +LG    Y  Y L   +G R    ++F  R  M      
Sbjct: 79  DFNFLCQLHDEADAWGFRFHTFLGAWKFYTSYTLKTFDGKR--YLESFEQRACMVALTLA 136

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A E    + S  F  +TPT  N G +   +L SCFL  + D++  I  A+    
Sbjct: 137 RGNEALARELLAEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSAL 196

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   +
Sbjct: 197 QLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVW 256

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 257 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENREMALFSP---YDVE 313

Query: 512 DLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            +YGK F    I+    E  AD    K F  I     ++ +  + FE+G+P+I ++D  N
Sbjct: 314 RIYGKAFGDISISEHYDEMLADDRIRKTF--IQPRDFFQTLAEIQFESGYPYIMYEDSVN 371

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P    G ++ SNLC+EI  +NS+SE           +   CNLGS+N+ AH      
Sbjct: 372 RSNPI--AGRINMSNLCSEILQVNSASEFHDDLSYRRVGKDISCNLGSLNI-AH----AM 424

Query: 617 DYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D   LA T+  AVR L  V D++  +++    + N    AIGLG M     L    + Y 
Sbjct: 425 DSRNLAQTVEVAVRALTAVSDMSEINSVPSVAEGNRRSHAIGLGQMNLHGYLAREGMAYG 484

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS--------- 725
           S EA++  +     +++HA+  S  LAQER  ++  F+ S +  G +  D          
Sbjct: 485 SAEALDFTNLYFYCVTYHAVRTSNLLAQERKQSFDGFEKSTYASGAY-FDKYSERAWQPR 543

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +A++  +  +   S+  W  L+  V T G+ N N  AI PT +I+ I   + SI P 
Sbjct: 544 TARVAQLFADAGIALPSQADWQALRDAVMTHGLYNQNLQAIPPTGSISYINHATSSIHPI 603

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K   +G       F+ N+                       N++   D     
Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-----------------------NLDFYQD----- 635

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
              A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 636 ---AYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692

Query: 904 RSR 906
           R R
Sbjct: 693 RLR 695


>gi|307132177|ref|YP_003884193.1| ribonucleoside-diphosphate reductase 2, subunit alpha [Dickeya
           dadantii 3937]
 gi|306529706|gb|ADM99636.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Dickeya
           dadantii 3937]
          Length = 715

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 283/624 (45%), Gaps = 77/624 (12%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA  +T+  ++ V+    + S  F  +TPT  N G +   +L SCFL  + D++  
Sbjct: 134 VALTLAQGDTQLARQLVD---EMMSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMES 190

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    T +R  GA I     +S GVIP +K+  D     NQ G
Sbjct: 191 IGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMKMLEDAFSYANQLG 250

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD R+   D++ R   ++    IPD+ ++    N    LF
Sbjct: 251 ARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITLRLARANQDMHLF 310

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V  ++ +   E  ++ E Y+       I+ +  ++A   ++ +  + FE+G+P++ 
Sbjct: 311 SPYDVERVYGMPLSEISVS-EKYDELVSHPGIRKW-TLNARQFFQTLAEIQFESGYPYLM 368

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAH 610
           F+D  N  +P    G +  SNLC+EI   S + E               CNLGS+N+   
Sbjct: 369 FEDTVNRHNPV--AGRITMSNLCSEILQVSRASEYQEDLNYRQVGKDISCNLGSLNI--- 423

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D   LA T+  AVR L  V D+ +   +      N    AIGLG M     L  
Sbjct: 424 --ARVMDGGNLARTVEIAVRALTAVSDMSHIGAVPSIANGNTESHAIGLGQMNLHGYLAR 481

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG- 727
             + Y S EA++  +     +++HA+  S  LAQER   ++ F  S +  G F    +  
Sbjct: 482 EGLFYGSEEALDFTNLYFYAVTYHALRTSSRLAQERNQTFAGFADSQYASGAFFDRYLSQ 541

Query: 728 ----LLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               +   VR+  A    + LP    W  LK +V   G+ N N  A+ PT +I+ I   +
Sbjct: 542 EWQPVTERVRELFACAGIA-LPLPEDWLALKAQVMRHGLYNQNLQAVPPTGSISYINHAT 600

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----E 835
            SI P                     +V+ ++ R              +G +G +     
Sbjct: 601 ASIHP---------------------IVSRIEIRK-------------EGKLGRVYYPAP 626

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            + +D ++ +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW 
Sbjct: 627 YMTNDNQRFYQDAYEIGPEKIIDTYAVATRHVDQGLSLTLFFPDTATTRDINKAQIYAWK 686

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY+R R   ++E + ++G
Sbjct: 687 KGIKTLYYIRVRQ-KALEGTEIQG 709


>gi|240047143|ref|YP_002960531.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           conjunctivae HRC/581]
 gi|239984715|emb|CAT04687.1| Ribonucleoside-diphosphate reductase [Mycoplasma conjunctivae]
          Length = 720

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 168/589 (28%), Positives = 273/589 (46%), Gaps = 77/589 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 158 FQPATPTFLNAGKLNRGEFISCYLIRVEDNMESISRAVTTSLQLSKRGGGVSVLLSNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 218 QGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILNFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526
            D++ R   ++    IPD+  +    N    LFS   V D+ + YGK F    I  E Y 
Sbjct: 278 ADEKIRIKSLSLGVVIPDITFELAKNNQDMALFS---VYDVQNEYGKAFSDISITEEYYN 334

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +    K F  ISA  L+  +  + FE+G+P+I F+D  N R+   H   +  SNLC+
Sbjct: 335 LLNNDRIKKTF--ISARKLFTLIAELHFESGYPYILFEDTVNKRNA--HPNRIVMSNLCS 390

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI   S+  E               CNLGS+N+     + +    +    +  ++  LD+
Sbjct: 391 EIAQPSTPSEYLPDLTFSKIGQDICCNLGSLNIDKAMKSGK----EFGEMVYYSILALDH 446

Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V    D++   +IEK  K NH   A+GLG M     L    I Y SPEA++  +     +
Sbjct: 447 VSRNSDLSAAPSIEKGNKLNH---AVGLGAMNLHGFLSQNQIFYDSPEALDFTNIFFYTM 503

Query: 691 SFHAISASVELAQERGAYSSFK------GSLWDQ------GVFPIDSIGLLAEVRDELAM 738
           +FHA  +S  LAQ+ G +S F+      GS +D+      G F   +   + E+     +
Sbjct: 504 AFHAFKSSSILAQKFGPFSGFENTKFANGSYFDKYTKAKSGEFEPKT-QKIKEIFAHYKV 562

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              ++  W +L + +K +G+ NS+ MAIAPT +I+ +   + S+ P    + V+      
Sbjct: 563 EIPTKQDWIDLVENIKRVGLANSHLMAIAPTGSISYLNSCTPSLQPVVSPVEVRKEGKLG 622

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V ++ +N                              D+++     A+E+ P+ +I 
Sbjct: 623 RVYVPAYKINF-----------------------------DNMRYYAKGAYELGPIPIIN 653

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            A+  QK IDQ+ SL L+L D+ + + L+  Y  A+  G  + YY+R R
Sbjct: 654 IAAEAQKHIDQSISLTLFLTDKATTRDLNKAYIHAFKKGCGSIYYVRIR 702


>gi|208401181|gb|ACI26682.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 173/601 (28%), Positives = 274/601 (45%), Gaps = 60/601 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAKYS 397
           F+  LSS   + +TP +   G      +SC+L    TT  DD   +   L E A + +  
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDT--VRSILNEVAPILQSR 278

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G        +  H    N +S+G++  LK+ +   +A+N    R   VC Y+E WH 
Sbjct: 279 GGVG--------IALHTLNQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHA 330

Query: 458 DVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510
           D    L ++     ++  R   + +A W+PDL  KR        ++  WT F  D  S+L
Sbjct: 331 DTRAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNL 389

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             LYG  FE  YE YE      +    R++   ++ R   T    TG P+I  KD  N  
Sbjct: 390 SKLYGDRFEREYEYYESSGFGVDSIPIREM-MYSIVRSAAT----TGSPFIVLKDAFNRH 444

Query: 571 -SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----LAHFANNQFDYDKLAST 624
                    +  SNLCTEI   +  +   VCNL SINL     +      +FD   L   
Sbjct: 445 YHLDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRA 504

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTA   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++  
Sbjct: 505 VRTATIFVNAMMLCNDYPTEKSRAGMERHRSIGVGLQGLHTTFLRLGLDMVCDEARKLNK 564

Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
              E +   A++ S EL  E G   +S F  S++  G F  D         +++ +  T 
Sbjct: 565 RIAELMLLEAMTTSCELC-EHGLPKFSDFDESIYSSGRFHFDGW-------EDVEL--TE 614

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  WDEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    
Sbjct: 615 QYEWDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRP 674

Query: 803 NSFLVNELK-----QRDLWD--EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           N  L+ EL+     ++D  +  EA+ S       + GN       +K  + T FE + + 
Sbjct: 675 NPLLMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQID 732

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L+     R  ++D +QS +LY+ E S        +  +   A+  GLKT  YY R R AT
Sbjct: 733 LLNMCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKAT 792

Query: 910 S 910
           +
Sbjct: 793 N 793


>gi|9629746|ref|NP_045238.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 4]
 gi|2605964|gb|AAC59536.1| 21 [Equid herpesvirus 4]
          Length = 789

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 179/663 (26%), Positives = 296/663 (44%), Gaps = 68/663 (10%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340
           LGLQ  + Y+  +L  + G R+E    FF+R+A        E+   A             
Sbjct: 131 LGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTATHYTMEQPAMARVLVSGEVGWTYI 190

Query: 341 --EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              F+  L+    + +TP +   G     ++SC+L    V D    I   ++E   +   
Sbjct: 191 FRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCN 250

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G           +   T G S+GV+  LK+ +   +A+N  G+R   VC Y E WH
Sbjct: 251 RGGIGLSLQRF-----NTPPTEGCSRGVMALLKLLDSMTMAINSDGERPTGVCVYFEPWH 305

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR----VTQNAG--WTLFSPDEVSD 509
            D+   L++R     D+  R  ++    W PDLF  R    V   +G  WTLF  D  S 
Sbjct: 306 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLFD-DTASH 364

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN- 568
           L  +YG +F   YE  ER     +    + ++ + +   ++     TG P++ FKD CN 
Sbjct: 365 LCHMYGNDFTREYERLERCGFGIDAIPIQDMAFIIVRSAVM-----TGSPFLMFKDACNR 419

Query: 569 -IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANN-----QFDYD 619
                 +  G +  SNLCTEI  ++   +  VCNL SINL   LA    N      FD+ 
Sbjct: 420 HYHFDMRKRGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLALPPPNIAGVPYFDFA 479

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L     TA   ++ ++  + +   K++K    +R++GLG+ G  +   +L +  ASPEA
Sbjct: 480 ALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEA 539

Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++  +  E +  +++ AS  L +     +  F+ S + +G  P D+            +
Sbjct: 540 HQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYP---------NV 590

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+
Sbjct: 591 TLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 650

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853
               N  L+  ++     + A +  L   + +  ++     DL   H      TAFE D 
Sbjct: 651 VLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYDQ 710

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907
             LI   + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + 
Sbjct: 711 TMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKK 770

Query: 908 ATS 910
           AT+
Sbjct: 771 ATN 773


>gi|163844497|ref|YP_001622152.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163675220|gb|ABY39330.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           ATCC 23445]
          Length = 713

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQVGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHQDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 692 YIRLRQ-MALEGTQVQG 707


>gi|152964773|ref|YP_001360557.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151359290|gb|ABS02293.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
          Length = 720

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 179/670 (26%), Positives = 291/670 (43%), Gaps = 72/670 (10%)

Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE 334
           D V    D  +   F F  +LG    Y  Y L   +G+  E  + F  R  M        
Sbjct: 89  DFVRSLTDRAHAAKFRFATFLGAFKFYTSYALKSFDGT--EYLEGFEDRAVMTALTLAVG 146

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A    + + +  F  +TPT  N+G     +L SCFL  + DD+  I   +     L
Sbjct: 147 DEALATAIVDEVIAGRFQPATPTFLNAGKASRGELVSCFLLRIEDDMESIGRGINSALQL 206

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL 
Sbjct: 207 SKRGGGVALLLSNIREYGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLS 266

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+  +
Sbjct: 267 AHHPDILRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEPMHLFSP---YDVERV 323

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   + R+    +     +I A   ++ +  + FE+G+P+I F+D  N  +P
Sbjct: 324 YGKPFGDVAVSEHYREMVADDRIRKTQIDAREFFKTLAELQFESGYPYIVFEDTVNKANP 383

Query: 573 QQHVGVVHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI    T ++ +E+           CNLGS+N+         D   
Sbjct: 384 I--AGRINMSNLCSEILQVNTPSTLAEDLTYSEIGKDISCNLGSLNIAL-----AMDGGN 436

Query: 621 LASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           L  ++ TAVR L  V +  +  ++      N    AIGLG M     L    + Y S E 
Sbjct: 437 LGQSVETAVRALTAVSVASDIQSVPSVAYGNSKSHAIGLGQMNLHGYLARERVHYGSEEG 496

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLA 730
           ++  +     + FHA+ AS  +A ERG  +  F+ S +  G F         + +   +A
Sbjct: 497 IDFTNVYFAAVLFHALRASNAIAIERGETFEGFENSKYADGTFFDKYLENDFLPATERVA 556

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +  +  +   +R  W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 557 GLFADAGIALPTRAEWAQLKASVVEHGIFNQNLQAVPPTGSISYINNSTSSIHPIASKIE 616

Query: 791 V-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + K    G       F+ N+                       N+E   D        A+
Sbjct: 617 IRKEGKLGRVYYPAPFMTND-----------------------NLEYYQD--------AY 645

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 646 EIGPEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIRIRQ- 704

Query: 909 TSVEKSTLKG 918
            ++E + ++G
Sbjct: 705 MALEGTEVEG 714


>gi|153801926|ref|ZP_01956512.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
 gi|124122571|gb|EAY41314.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
          Length = 670

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 188/686 (27%), Positives = 294/686 (42%), Gaps = 79/686 (11%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315
           + +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E
Sbjct: 17  KMVEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYE 76

Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
             Q  ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SS
Sbjct: 77  SAQFLYILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSS 133

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 134 CVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKY 193

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                   +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  
Sbjct: 194 FQTAVKCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMY 253

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWR 547
           KR+ +    TLFSP +V  L+D + +   EFE  Y  YE       IK  + + A+ ++ 
Sbjct: 254 KRLVEGGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDP---SIKK-KTVKALEIFT 309

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS--------SEETA 598
            ++     TG  +I   D CN  SP    V  V  SNLC EI L +S        S E A
Sbjct: 310 LLMQERASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIA 369

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL A    +  D+++L+  +   VR LD ++D   + +  A++S+   R +G+
Sbjct: 370 LCTLSAFNLGA--IESLDDFEELSDLV---VRALDALLDYQDYPLPAARRSSMNRRTLGV 424

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G++ +   L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +
Sbjct: 425 GVINYAYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAK 484

Query: 719 GVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           G+ PID+       +D +L         WD+L+  +   G+RNS   A+ P+ T + I  
Sbjct: 485 GLMPIDTYK-----KDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISN 539

Query: 778 VSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            +  I+P    + VK++  G    VV  F   +     LW      ++  +DG       
Sbjct: 540 ATNGIEPPRGYVSVKASKDGILKQVVPEFTRLKENYELLW------NIGSNDGY------ 587

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--------KKLDFI 888
                  +H                  QK++DQA S N   D PS         KKL   
Sbjct: 588 -------LHLVGI-------------MQKFVDQAISANTNYD-PSNFDSGKVPMKKLLQD 626

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKS 914
              A+  G+KT YY  +R     E++
Sbjct: 627 LLTAYKFGVKTLYYHNTRDGAKDEQT 652


>gi|302595802|sp|P0CG99|RIR1A_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1
 gi|302595803|sp|P0CH00|RIR1B_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 2;
           AltName: Full=Ribonucleotide reductase R1 subunit 2
          Length = 722

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 182/668 (27%), Positives = 296/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +TE  ++ V
Sbjct: 98  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTELAEKLV 157

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 158 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 215 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 275 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 331

Query: 520 --IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                E Y    D   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 332 DVSVTEKYYEMVDDARIRK-TKINAREFFQTLAELQFESGYPYIMFEDTVNRSNPI--AG 388

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+  E               CNLGS+N+         D    A TI
Sbjct: 389 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 443

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 444 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSEEGIDFTN 503

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + FHA+ AS ++A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 504 IYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFDKYTDQVWEPKTDKVRRLFAD 563

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
               +P    W +LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 564 ADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-- 621

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                                           +G IG +      + +D    +  A+EI
Sbjct: 622 --------------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEI 649

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 650 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 708

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 709 LEGTEVEG 716


>gi|225628772|ref|ZP_03786806.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|260167085|ref|ZP_05753896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261756479|ref|ZP_06000188.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
 gi|225616618|gb|EEH13666.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|261736463|gb|EEY24459.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
          Length = 738

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|227876444|ref|ZP_03994556.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269976012|ref|ZP_06183016.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|306817403|ref|ZP_07451148.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307700430|ref|ZP_07637469.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842985|gb|EEJ53182.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269935840|gb|EEZ92370.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|304649844|gb|EFM47124.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307614415|gb|EFN93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
          Length = 733

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 185/661 (27%), Positives = 298/661 (45%), Gaps = 74/661 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y  +F F  +LG    Y  Y L   +G R    + F  RV M         E  A +   
Sbjct: 112 YAHNFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLGRGDETLATDIME 169

Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TPT  N+G +   ++ SCFL  + D++  I   L     L+K  GG+   
Sbjct: 170 EIITGRYQPATPTFLNAGKKARGEMVSCFLVRIEDNMESIARGLNSALQLSKRGGGVALL 229

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL  +H D+  FL
Sbjct: 230 LTNLREAGAPIKRIQNQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLNAFHPDIMSFL 289

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522
           D ++   D++ R   ++    IPD+  +         LFSP    D+  +YG  F EI+ 
Sbjct: 290 DTKRENADEKIRIKTLSLGVVIPDIAFELAKNKEPMYLFSP---YDIERVYGVPFSEISV 346

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y    D  +I   ++I A   ++ +  + FE+G+P+I ++D  N  +P    G +  
Sbjct: 347 TEKYRELVDNPQIHK-KQIDARKFFQTLAEIQFESGYPYILYEDTVNRANPID--GRIVM 403

Query: 582 SNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S + E               CNLGS+N+     +  F+      +IR A+
Sbjct: 404 SNLCSEILQVSEASELNPDLSYQKVGKDISCNLGSMNIAKTLDSPDFE-----QSIRVAI 458

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ N   +   ++ N    A+GLG M     L    I Y SPE ++  +    
Sbjct: 459 RALTAVSDLTNVECVPTIQRGNAMSHAVGLGAMNLHGCLARHEIFYGSPEGLDFTNMYFY 518

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRTS 742
             +F+A+ AS ELA ERG  +  F+ S +  G +    I        A+VR+  A + + 
Sbjct: 519 ATAFYALKASHELAVERGQRFEGFERSQYATGEYFEKYINETWEPKTAKVREIFAQS-SV 577

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +LP    W  L + ++  GM N N  AI PT +I+ I   + SI P      V S +   
Sbjct: 578 KLPTTEDWRRLAEAIQRDGMYNQNLQAIPPTGSISYINNSTASIHP------VASKI--- 628

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                          ++  E  I  + Y    + N     D+L+  +  A+EI    +I+
Sbjct: 629 ---------------EIRKEGKIGRVYYPAPYMTN-----DNLE-YYQDAYEIGYEKIID 667

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R A ++E + ++
Sbjct: 668 TYAEATQHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQA-ALEGTEVE 726

Query: 918 G 918
           G
Sbjct: 727 G 727


>gi|118468034|ref|YP_886648.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469666|ref|YP_885419.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118169321|gb|ABK70217.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170953|gb|ABK71849.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 706

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 182/668 (27%), Positives = 296/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +TE  ++ V
Sbjct: 82  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTELAEKLV 141

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 142 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 198

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 199 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 258

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 259 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 315

Query: 520 --IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                E Y    D   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 316 DVSVTEKYYEMVDDARIRK-TKINAREFFQTLAELQFESGYPYIMFEDTVNRSNPI--AG 372

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+  E               CNLGS+N+         D    A TI
Sbjct: 373 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 427

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 428 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSEEGIDFTN 487

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + FHA+ AS ++A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 488 IYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFDKYTDQVWEPKTDKVRRLFAD 547

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
               +P    W +LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 548 ADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-- 605

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                                           +G IG +      + +D    +  A+EI
Sbjct: 606 --------------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEI 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 634 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 692

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 693 LEGTEVEG 700


>gi|23500071|ref|NP_699511.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|62317764|ref|YP_223617.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|83269750|ref|YP_419041.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|148558300|ref|YP_001257347.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|161620389|ref|YP_001594275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|225686157|ref|YP_002734129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256015099|ref|YP_003105108.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260756871|ref|ZP_05869219.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260760302|ref|ZP_05872650.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260763542|ref|ZP_05875874.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882685|ref|ZP_05894299.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|261215814|ref|ZP_05930095.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261216943|ref|ZP_05931224.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261313588|ref|ZP_05952785.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261319173|ref|ZP_05958370.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261319813|ref|ZP_05959010.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261753310|ref|ZP_05997019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|265986824|ref|ZP_06099381.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|265989660|ref|ZP_06102217.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265993238|ref|ZP_06105795.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|23463662|gb|AAN33516.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           1330]
 gi|62197957|gb|AAX76256.1| NrdE, ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940024|emb|CAJ13055.1| Ribonucleotide reductase large subunit:Prenyl group binding site
           (CAAX box) [Brucella melitensis biovar Abortus 2308]
 gi|148369585|gb|ABQ62457.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ovis
           ATCC 25840]
 gi|161337200|gb|ABX63504.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella canis
           ATCC 23365]
 gi|225642262|gb|ACO02175.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           melitensis ATCC 23457]
 gi|255997759|gb|ACU49446.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260670620|gb|EEX57560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260673963|gb|EEX60784.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676979|gb|EEX63800.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260872213|gb|EEX79282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|260917421|gb|EEX84282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260922032|gb|EEX88600.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261292503|gb|EEX95999.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261298396|gb|EEY01893.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261302614|gb|EEY06111.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261743063|gb|EEY30989.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|262764108|gb|EEZ10140.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263000329|gb|EEZ13019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|264659021|gb|EEZ29282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 713

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 692 YIRLRQ-MALEGTQVQG 707


>gi|261220159|ref|ZP_05934440.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265996494|ref|ZP_06109051.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260918743|gb|EEX85396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262550791|gb|EEZ06952.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 713

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 603 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 636

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 637 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 691

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 692 YIRLRQ-MALEGTQVQG 707


>gi|320538994|ref|ZP_08038669.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
 gi|320030927|gb|EFW12931.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
          Length = 656

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 159/559 (28%), Positives = 251/559 (44%), Gaps = 35/559 (6%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIE 315
           R +E G   +LL E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E
Sbjct: 2   RMVEMGKYDKLLLEDYSAEEFEQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYE 61

Query: 316 MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSS 370
             Q  ++ VA  L      +E R      FYN +S+F     TP +  SG R P  Q SS
Sbjct: 62  SAQFLYILVAACL-FSNYPRETRLDYVKRFYNAISTFKISLPTPIM--SGVRTPTRQFSS 118

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 119 CVLIECGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKH 178

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  
Sbjct: 179 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMY 238

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ +    TLFSP +V  L+  +     EFE  Y  YE+     +    +++ AV L+ 
Sbjct: 239 QRLIKGQDITLFSPSDVPGLYAAFFADQDEFERLYTEYEQDDSIRQ----KRVKAVELFS 294

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETA 598
            M+     TG  +I   D CN  SP    +  V  SNLC EI L        N  + E A
Sbjct: 295 LMMQERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIA 354

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           +C L + NL     +N  D ++LA+    AVR LD ++D   + I+ A +     R +G+
Sbjct: 355 LCTLSAFNLGT--IDNLDDLEELAT---LAVRSLDALLDYQDYPIKAAHRGAMGRRTLGV 409

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G++ F   L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + Q
Sbjct: 410 GVINFAHYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETSYSQ 469

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+ PID+     +V      N      W+ L++ ++  G+ NS   A+ P+ T + I   
Sbjct: 470 GILPIDTYKKDLDV----ICNEPLHYDWETLRQEIQETGLSNSTLSALMPSETSSQISNA 525

Query: 779 SQSIDPSYQNLYVKSNMSG 797
           +  I+P   ++ +K++  G
Sbjct: 526 TNGIEPPRGHISIKASKDG 544


>gi|306840846|ref|ZP_07473593.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
 gi|306289241|gb|EFM60490.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
          Length = 738

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDADIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|310816081|ref|YP_003964045.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754816|gb|ADO42745.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 718

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 187/646 (28%), Positives = 290/646 (44%), Gaps = 78/646 (12%)

Query: 295 YLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           +LG    Y  Y L   +G+R +E  +   + VA+ LA       +R V+   +L+   F 
Sbjct: 106 FLGAFKYYTSYTLKTRDGNRYLERFEDRVVMVALALARGNEVLARRIVD--EVLTG-RFQ 162

Query: 353 CSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N+G +   +L SCFL    D++  I   +     L+K  GG+    + +R  G
Sbjct: 163 PATPTFLNAGKKSRGELVSCFLLRFEDNMESIGRGINSALQLSKRGGGVALLLSNLREAG 222

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A I G   +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D
Sbjct: 223 APIKGIANQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENAD 282

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQA 529
           ++ R   ++    IPD+  +    NA   +FSP    D+  + GK F +I+  E+Y    
Sbjct: 283 EKIRIKTLSLGVVIPDITFELAKNNADMYMFSP---HDVEKVTGKAFGDISISEHYYDFV 339

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           D   I    K+ A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI 
Sbjct: 340 DDPRIHK-TKMKARQFFQTLAEVQFESGYPYILFEDTANRANPID--GRINMSNLCSEIL 396

Query: 589 TLNSSS---EETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +NS S   E+           CNLGS+N+         D   +   + TA+R L  V +
Sbjct: 397 QVNSPSVLNEDLTFADIGSDISCNLGSLNVA-----KVIDNGDIGVAVETAIRALTAVSE 451

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           ++   ++   +  N    AIGLG M     L    I Y SPEA++        ++FHAI+
Sbjct: 452 MSAIDSVPSVRAGNDRSHAIGLGQMNLHGFLARERIHYDSPEALDFTRAYFAAVAFHAIN 511

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRTSRLP 745
           AS ++A ER   +  F+ S +  G F          P      + EV ++  +   S   
Sbjct: 512 ASNKIAVERNETFDGFEKSRYADGSFFDMYLEESFAPTSD--KVREVLEKFGVALPSVAD 569

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNS 804
           W  LK+RV   G+ N N  AI PT +I+ I   + SI P    + + K    G       
Sbjct: 570 WGALKERVMKDGLFNRNLQAIPPTGSISYINHATASIHPVAAKVEIRKEGKIGRVYYPAP 629

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L NE                       N E   D        A+EI P  +I+  +   
Sbjct: 630 YLTNE-----------------------NAEYYRD--------AYEIGPEAIIDLYAEAT 658

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R A 
Sbjct: 659 RHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTIYYIRLRQAA 704


>gi|213965883|ref|ZP_03394074.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
 gi|213951461|gb|EEB62852.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
          Length = 717

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 167/599 (27%), Positives = 275/599 (45%), Gaps = 78/599 (13%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  NSG  +  +  SCFL  + D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 160 FQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNLRE 219

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 220 QGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKREN 279

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527
            D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F      ENY  
Sbjct: 280 ADEKIRIKSLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADINITENYAD 336

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+E
Sbjct: 337 MVEDPRIRK-QKINARQFFQTIAEIQFESGYPYIMFEDTVNRANPIE--GRINMSNLCSE 393

Query: 588 I-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I  +N+ S            E   CNLGS+N+         D      T+ TA+R L  V
Sbjct: 394 ILQVNTPSTYNADLSYEHVGEDISCNLGSLNIAM-----TMDSPDFGRTVETAIRGLTAV 448

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            +  +  ++   +K N    AIGLG M     L    I Y S E ++  +     + +  
Sbjct: 449 SEQTSIDSVPSIRKGNDGSHAIGLGQMNLHGYLGREKIMYGSEEGLDFTNAYFAAVLYAV 508

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLP--- 745
           + AS ++A+ERG  + +F+ S +  G +     P +       V+ E+  N T+ +P   
Sbjct: 509 LRASNKIARERGQKFVNFENSDYASGKYFDNFDPAEFQPKTQHVK-EIFENSTAHIPDAE 567

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++            
Sbjct: 568 DWAQLKADVMEYGLFNRNLQAVPPTGSISYINNSTSSIHPIASQIEIRK----------- 616

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESA 860
                                  +G IG +      + +D ++    A+EI    +I++ 
Sbjct: 617 -----------------------EGKIGRVYYPAPHLDNDNREYFQDAYEIGYEKIIDTY 653

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +   K++DQ  SL L+  D  S + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 654 AVATKYVDQGLSLTLFFKDTVSTRDLNRAQIYAWRKGIKTLYYIRLRQ-VALEGTEVEG 711


>gi|304373443|ref|YP_003856652.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|304309634|gb|ADM22114.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|330723640|gb|AEC46010.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis MCLD]
          Length = 721

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 178/659 (27%), Positives = 297/659 (45%), Gaps = 89/659 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           KY+  F   ++G    Y  Y L  N S+ E  + F  R  +          +RA      
Sbjct: 96  KYKHHFP-SFMGALKFYSSYALKSNDSQ-EYLEHFQERALLNALFLAKGNSERASSILRQ 153

Query: 346 LSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    F  +TPT  N+G ++  +  SC+L  + D++  I  A+  +  L+K  GG+    
Sbjct: 154 IMLGRFQPATPTFLNAGKKNRGEYVSCYLIRIEDNMESISRAVTTSLQLSKRGGGVSILL 213

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R +GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD
Sbjct: 214 SNLREMGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILSFLD 273

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521
            ++   D++ R   ++    IPD+  +    N    LFS   V D+   Y K F    I 
Sbjct: 274 TKRENADEKIRIKSLSLGVVIPDITFELAKDNKDMALFS---VYDVEREYKKAFSDISIT 330

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+   +    K F  I+A  L+  +  + FE+G+P+I F D  N R+  ++  V+  
Sbjct: 331 QEYYKMLENPNIKKNF--INARKLFTTIAELHFESGYPYILFDDTVNRRNAHKNRIVM-- 386

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S+              E   CNLGS+N+     + +    +    +  A+
Sbjct: 387 SNLCSEIVQPSTPSEYLPDLTFTKKGEDICCNLGSLNIDKAMESGK----EFGELVYQAI 442

Query: 630 RVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             LD+V       +  +IE     NH   A+GLG M     L   HI Y S EA++  + 
Sbjct: 443 VSLDHVSRTSDLSSAPSIENGNNKNH---AVGLGAMNLHGFLATNHIYYDSKEALDFTNI 499

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL-----------LAEVRD 734
               +++HA  +S  LAQ+ GA+  FK S +  G +      +           + EV +
Sbjct: 500 FFYTMAYHAFKSSSILAQKFGAFEHFKESKFADGSYFDKYTKVSEKEYQPKTQKIKEVFE 559

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +  +   ++  W EL + +K +G+ NS+ MA+APT +I+ +   + S+ P          
Sbjct: 560 KYQVTIPTKQDWIELVENIKRVGIANSHLMAVAPTGSISYLSSCTPSLQP---------- 609

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATA 848
                      +V  ++ R              +G IG +  +P      +++K     A
Sbjct: 610 -----------VVAPVETRK-------------EGKIGRV-YVPAYKMNQENMKFYSLGA 644

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +E+ P  +I+ A+  QK IDQ+ SL L+L D  + + L+  Y +A+  G  + YY+R R
Sbjct: 645 YELGPDPIIDIAAEAQKHIDQSISLTLFLKDTATTRDLNKAYIRAFKKGCGSIYYVRIR 703


>gi|312173338|emb|CBX81593.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           ATCC BAA-2158]
          Length = 716

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 176/644 (27%), Positives = 290/644 (45%), Gaps = 67/644 (10%)

Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           R F F+ +LG    Y  Y L   +G R    ++F  RV M         +  A+   + +
Sbjct: 97  RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLESFTERVCMVALTLAKGDQPLALALADEI 154

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ L   +  I+ + +
Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVELIYALPFADISISEKYH 334

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  AD    + F  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +N+ +E           +   CNLGS+N+ AH      D    A T+  AVR L 
Sbjct: 391 SEILQVNTPTEYNDDLSYRHIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 445

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++
Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTY 505

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743
           HA+  S +LA+ER   +S F  S +  G +    +G         +A +  +  +   ++
Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQ 565

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK+ V   G+ N N  AI PT +I+ I   + SI P                   
Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V+ ++ R       +    Y+     N     +D +  +  A++I P  +I++ +  
Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYAEA 655

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699


>gi|284009250|emb|CBA76358.1| ribonucleoside-diphosphate reductase alpha chain [Arsenophonus
           nasoniae]
          Length = 709

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 185/660 (28%), Positives = 294/660 (44%), Gaps = 72/660 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA    E    A +  
Sbjct: 88  YNHKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALTLAQGNQE---LASQLV 144

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           N + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 145 NEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 204

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 205 LLTNLREAGAPIKLIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILSF 264

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+       N    LFSP ++   + +   E  I  
Sbjct: 265 LDTKRENADEKIRIKTLSLGVVIPDITFHLAKNNQDMYLFSPYDIERCYGVPMSEIAIT- 323

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    +   I+  +KI+A   +  +  + FE+G+P+I F+D  N  +P    G ++ S
Sbjct: 324 EKYSEMVNNKNIRK-QKINAREFFLTLAEIQFESGYPYILFEDNANRLNPI--YGRINMS 380

Query: 583 NLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI  +N +S            +   CNLGS+N+         D    A +I  A+R
Sbjct: 381 NLCSEILQVNDASIYDENLDYRHVGKDISCNLGSMNIA-----KTMDSPNFAHSIEIAIR 435

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D++   ++   ++ N    AIGLG M     L   HI Y S E ++  +     
Sbjct: 436 ALTAVSDMSQIQSVPSIQEGNKKSHAIGLGQMNLHGYLAREHIYYGSEEGIDFTNIYFYT 495

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRL 744
           ++++A+ AS +LA ER  A+S F  S +  G +    I    + + E    L       +
Sbjct: 496 VTYYALQASNKLAIERQHAFSGFAHSKYASGEYFEKYINQQWQPKTEKIKQLFQRSAIHI 555

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W +LK+ +   G+ N N  AI PT +I+ I   + SI P    + + K    G  
Sbjct: 556 PTCEDWQQLKQSIMEHGIYNQNLQAIPPTGSISYINHSTSSIHPIVARIEIRKEGKIGRV 615

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L NE                       N+E   D        A++I    +I++
Sbjct: 616 YYPAPYLTNE-----------------------NLEYYQD--------AYQIGAEKIIDT 644

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R R +T +E + +KG
Sbjct: 645 YAAATQHVDQGLSLTLFFTDDATTRDINRAQIYAWKKGIKTLYYIRIRQST-LEGTEVKG 703


>gi|317506845|ref|ZP_07964617.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254773|gb|EFV14071.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 728

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 188/693 (27%), Positives = 305/693 (44%), Gaps = 85/693 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310
           PE   RY  E VK                  D  Y + F F  +LG    Y  Y L   +
Sbjct: 88  PEVLGRYSREFVKGLF---------------DQAYAKKFRFPTFLGAFKYYTSYTLKTFD 132

Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368
           G R +E  +   + VA+ LA  + E   + VE    +    F  +TPT  N G +   + 
Sbjct: 133 GKRYLERFEDRVVMVALALADGDEELASQLVE---EIIEGRFQPATPTFLNCGKKQRGEP 189

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 190 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVM 249

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 250 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDI 309

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   E  +  E Y    D   I+  +KI+A   ++ 
Sbjct: 310 TFELAKRNDDMYLFSPYDVERVYGVPFAEVSVT-EKYFEMVDDERIRK-KKINAREFFQT 367

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI       T N+    + +  
Sbjct: 368 IAELQFESGYPYIMYEDTVNRANPID--GRITHSNLCSEILQVSTASTFNADLSYSHIGK 425

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      T+ T++R L +V D     ++    + N    A
Sbjct: 426 DISCNLGSLNIA-----KTMDSPDFGRTVETSIRALTSVSDQTRIDSVPSIAEGNEQSHA 480

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+SAS ++A ERG A++ F+ S
Sbjct: 481 IGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALSASNKIAIERGRAFTGFERS 540

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP----WDELKKRVKTIGMRNSNCMAI 766
            +  G F    +    E + E       R    +P    W  LK+ V+  G+ N N  A+
Sbjct: 541 KYASGEFFEKYLTQSWEPKTERVRELFERAGVAIPTVADWQRLKESVQAHGIYNQNLQAV 600

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 601 PPTGSISYINHSTSSIHPVAAKIEIRK------------------------EGKIGRVYY 636

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
               + N     D+L+  +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 637 PAPYLAN-----DNLE-YYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDI 690

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+KT YY+R R   ++E + ++G
Sbjct: 691 NKAQIYAWRKGIKTLYYIRLRQ-LALEGTEVEG 722


>gi|154415929|ref|XP_001580988.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
 gi|121915211|gb|EAY20002.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
          Length = 614

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 167/626 (26%), Positives = 278/626 (44%), Gaps = 60/626 (9%)

Query: 293 FEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           F    ++++  RY +H    ++ E P+  F RVA  LA  ET+KEK   +F  ++ +F F
Sbjct: 20  FTSNAIKVMKARYLVHNEEGKVYETPEQMFTRVAKALASVETDKEKWTKKFEKVMMNFEF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +  TL N+G +   +S+C +  + D L  IF  LQ+ A+L +   G+G  +  +R  G
Sbjct: 80  IPAGRTLANAGAKTDLVSNCVVLHMEDSLDSIFQTLQDAALLQQAGSGIGFPFHKLRPAG 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
                T G S G + FL++  +    + Q G R GA  A +   H D+ EF+  ++  G 
Sbjct: 140 YKCKRTLGSSSGPLSFLRIYAEAFRIIQQHG-RHGANMAIMRVDHPDIIEFIHAKEQPGT 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +    D FM+RV +N        D    +    G++    Y   +  A R
Sbjct: 199 ----YENFNFSVAFTDEFMERVIKN--------DPSPWMCKWNGEKMAPRYITRD-AAGR 245

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E      ISA  L  +++ + +  G P   F D  N  +P   +G +   N C E  L+
Sbjct: 246 VENIQPLTISAPELMNEIIHLAWTNGEPGCVFIDTVNKANPLPGLGPIECCNPCGEQFLH 305

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S       CNLG+INL     + + D+  L    RTA+R+LDNV+ +    +++      
Sbjct: 306 SGD----ACNLGAINLEKFVVDGKIDFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFT 361

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MG    L L+ +PY S E    A+E M+ +   AI  S  L  E+G++ +F
Sbjct: 362 NNRRIGLGIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRLGLEKGSFPNF 421

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W                                     K   MRN++   +APT +
Sbjct: 422 EKSVWAD-----------------------------------KVPAMRNTSLTNVAPTGS 446

Query: 772 IANICGVSQSIDPSYQNLYVKSN-MSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + +  VS  ++P +   Y + N ++G     VN  L   L+    + +  I D     G
Sbjct: 447 TSMLLDVSSGVEPYFALAYRRGNCLAGPMKPFVNKHLQKALEDCGCFTDK-IMDKILETG 505

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
           ++ N+  +P+ L+++  T+ +I     I   +R QK    A S  + +  E +   +   
Sbjct: 506 TLANVTEVPEQLRRVFVTSLDIKAEDHIAMQARVQKHCCNAISKTINFRREATEDDVRAG 565

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVE 912
           + + W  G K  T Y   SR A  +E
Sbjct: 566 FIEGWKNGCKGLTVYRNGSRDAQVLE 591


>gi|296171153|ref|ZP_06852601.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894289|gb|EFG74044.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 721

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 182/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 97  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 156

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 213

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 214 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 273

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 333

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G +
Sbjct: 334 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--GKI 389

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 390 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 444

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 445 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIY 504

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741
              + +HA+ AS  +A ERG A+  F+ S +  G F       + E +     +L  +  
Sbjct: 505 FYTVLYHALRASNRIAIERGKAFGGFERSKYKSGEFFDKYTDQVWEPQTDKVRQLFADAE 564

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
            R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 565 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 624

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       ++ N+                       N+E   D        A+EI    +
Sbjct: 625 GRVYYPAPYMTND-----------------------NLEYFQD--------AYEIGYEKV 653

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 654 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 712

Query: 916 LKG 918
           ++G
Sbjct: 713 VEG 715


>gi|153010277|ref|YP_001371491.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562165|gb|ABS15662.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           anthropi ATCC 49188]
          Length = 739

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 181/658 (27%), Positives = 295/658 (44%), Gaps = 69/658 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA   
Sbjct: 107 FNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARG- 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A      + +  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 --NEQLARNLMEEIIAGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 223

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 224 QLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 283

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 284 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVERVY 343

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  I  E Y    D   I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 344 GVPLTEISIT-EKYRELVDDARITK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 401

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ +   ++ F   
Sbjct: 402 PID--GRITMSNLCSEILQVSEASIFGEDLSYDHLGKDISCNLGSLNIASAMDSSDF--- 456

Query: 620 KLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI T++R L  V D++   ++    + N    AIGLG M     L    I Y S E
Sbjct: 457 --GKTIETSIRALTAVSDMSQIGSVPSVARGNDESHAIGLGQMNLHGYLARERIYYGSEE 514

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL-------- 729
            V+  +     +++HAI AS  +A E G ++  F+ S +  G +       L        
Sbjct: 515 GVDFTNIYFYTVTYHAIRASNLIAVETGKSFKGFEKSKYATGEYFAKYTEQLWEPATQKV 574

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E+ ++  +   ++  W +LK  V   G+ N N  A+ PT +I+ I   + SI P     
Sbjct: 575 REIFEKAGIAIPTQDDWRDLKNAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP----- 629

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           +V++++ R    E  I  + Y    + N     D+L   +  A+
Sbjct: 630 ----------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQDAY 664

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 665 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLR 722


>gi|311993226|ref|YP_004010092.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
 gi|284178064|gb|ADB81730.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
          Length = 751

 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 199/791 (25%), Positives = 334/791 (42%), Gaps = 86/791 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   GT   F  ++L  ++E  C   + V    +      ++ DG++  D++ A   
Sbjct: 1   MKVIKSSGTSQEFTPEKLIKVLEWGCENTR-VDPYELYQAIVPHLQDGMTTYDIQRAATK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            + ++I  +EP+Y  V +   +  LR++V                    P  F   I  G
Sbjct: 60  VAASMISIEEPDYQYVASNLAMFNLRKQVYGQ---------------FEPRSFIDQISFG 104

Query: 264 VKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           V      + ++      ++  L + + ++RDF   Y G   L ++Y +     G  IE P
Sbjct: 105 VNHNKYDKEVLAKWSAEEIALLESKIVHDRDFEMTYAGTMQLIEKYLVKDRSTGQIIETP 164

Query: 318 QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           Q  FM +  G+ L + + E R    + FY+ +S+      TP +  + T   Q SSC + 
Sbjct: 165 QFAFMLI--GMTLHQDDGENRLVNTIRFYDAVSTKKISLPTPIMAGARTPTRQFSSCVVI 222

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I  + +          G+G +   +R  G+ I     K  GVIPF K     
Sbjct: 223 EAGDSLKSINKSAESIVEYISKRAGIGINAGMIRAEGSKIGFGEVKHTGVIPFWKHIQTA 282

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++VE  L L+ N G D  R   ++    I DL  +R+ 
Sbjct: 283 VKSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVDENRIRHLDYGVQINDLMFERLI 342

Query: 495 QNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           ++   TLFSPD +   L++ Y K+     E YE      +++  +++ A  L    LT  
Sbjct: 343 KDDYITLFSPDIDAGRLYENYFKDAAAFREQYEALEKNPDVRK-KRVKARELIELFLTER 401

Query: 554 FETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLN-----SSSEETAVCNLGSINL 607
             T   +  F D      P  + V  +  SNLC EI L      S   E A+C L +  +
Sbjct: 402 SGTARIYPYFVDNVGDYGPFIRDVATIKQSNLCAEIALPTKDVYSEDAEIALCTLSAF-V 460

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           L +F  +  D + +       VR LDN++    + +++A K+    RA+G+G+  + + L
Sbjct: 461 LGNF--DWQDQETINELAEVQVRALDNLLSYQGYPVKEALKA-LKRRALGVGVTNYAAWL 517

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 YA  +A ++  E  E + +  I AS++LA+E+G    +K + W +G  PID   
Sbjct: 518 ADNFATYA--DANDLTHELFERLQYALIKASIKLAKEKGPCEYYKDTRWSRGELPID--- 572

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +  D+LA        W+ L+  +K  G+RNS   A+ P  + + +   +  I+P   
Sbjct: 573 WYNKRIDQLAAPNYV-CDWEALRAELKQYGIRNSTLSALMPCESSSQVSNSTNGIEPPRG 631

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K +  G F   N  + N     DL+D A                ++     K + T
Sbjct: 632 PVSIKESKEGSF---NQVVPNVELNADLYDYAW---------------KLAKQGNKPYLT 673

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL---------DFIYRQAWLMGLK 898
              I             KW+ Q+ S N Y D  + +K          D +Y   W  G K
Sbjct: 674 QVAI-----------MLKWVCQSASANTYYDPQNYEKGKVPMSVMMDDLLY--FWYFGGK 720

Query: 899 TTYYLRSRSAT 909
           T YY  +R  +
Sbjct: 721 TLYYHNTRDGS 731


>gi|323143006|ref|ZP_08077712.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417200|gb|EFY07828.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
          Length = 591

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 185/632 (29%), Positives = 285/632 (45%), Gaps = 102/632 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +D  F+ LG+  L + Y      S    PQ  F  V+       ++KE  A   Y+  S 
Sbjct: 9   KDNLFDDLGITRLKESYMRPEEKS----PQERFAFVSETFG---SDKE-HAQRIYDYASR 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                STP L    T      SCFL+ + D   G+   L E   L+   G          
Sbjct: 61  HWLSFSTPILSFGRTSQGLPVSCFLSYMEDSADGLIETLSEVNRLSMLGG--------GI 112

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+   I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+  F+++RK 
Sbjct: 113 GIHLGIRSADEKSVGVMPHLKIYDAACLAYRQGTTRRGSYAAFLDISHPDIIPFIEMRKP 172

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYGKEFEIA 521
           TGD   RT +++    I D FM+++T+       +  W L  P                 
Sbjct: 173 TGDQNMRTLNLHHGINISDAFMQKITKCMQDDNADDSWQLIDPHSK-------------- 218

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
                        K+   +SA  LW+++L +  +TG P++ F D      P  +++   H
Sbjct: 219 -------------KIIETVSARDLWQRILELRMQTGEPYLIFTDTAEKALPHWLKTKNLH 265

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +   + SNLCTEI L ++ + TAVC L S+NL  +F   + D   +   +     VL   
Sbjct: 266 I---NGSNLCTEIFLPTNEQRTAVCCLSSLNL-EYFDEWRHDSQFIDDVMEFLDNVLQYF 321

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+   ++I++AK S    R++GLG +GF S L    IP+ S  A  I  +      F  I
Sbjct: 322 IEHAPNSIKRAKLSAFKERSVGLGALGFHSYLQKKGIPFESVIAKSINKQ-----IFSHI 376

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
               ELA +R    + +G   D                D   M R S   W         
Sbjct: 377 RQCCELADKR--LCALRGPCPD--------------ASDAGVMRRFSH--W--------- 409

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                   MAIAP A+ + I G  S SI+P   N+Y +  +SG +   N  L   LK+ +
Sbjct: 410 --------MAIAPNASSSLIVGNTSPSIEPRRANVYRQDTLSGAYITKNRHLQQALKELN 461

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L  E + +D+  HDGS+ +++ +P  ++ +  TA EID  ++I+ A+ RQ++IDQ QS+N
Sbjct: 462 LDTEEIWTDIIAHDGSVQHLDILPQQIRDVFKTAQEIDQRFIIDLAADRQQFIDQGQSVN 521

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L+   + S K L   +  AW  GLK+ YY RS
Sbjct: 522 LFFPADVSIKYLHACHYLAWKKGLKSLYYCRS 553


>gi|162420596|ref|YP_001607866.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|162353411|gb|ABX87359.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
          Length = 716

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLG
Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 420

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D      +I  A+R L  V ++ N  ++   +K N    AIGLG M 
Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVTSIEKGNQESHAIGLGQMN 475

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y S EA++  +     +++HAI AS +LA ER   S FKG  +D+  + 
Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531

Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767
             S    ++  ++    +T+R+                W  L++ V   G+ N N  A+ 
Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P                     +V+ ++ R              
Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIR-------------K 615

Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +G IG +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710


>gi|33620590|ref|NP_891805.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
 gi|33348057|gb|AAQ15458.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
          Length = 747

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 209/799 (26%), Positives = 346/799 (43%), Gaps = 108/799 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205
           ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  +
Sbjct: 5   VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +  + P+Y  V +   +  LR+    +VY + Q    +        +  R I  G  
Sbjct: 64  ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPIDFYS-------HIERNIATGKY 112

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
            R + +     ++ YL   + ++ DF   Y G   L ++Y +    ++  IE PQ  +M 
Sbjct: 113 DREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYML 172

Query: 324 VAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDL 380
           + M L  +ETE   +  ++FYN +++      TP +  +G R P  Q SSC +    D L
Sbjct: 173 IGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESDDSL 230

Query: 381 YGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            GI      NA++   S   G+G +   +R  G+ I     +  GVIPF K       + 
Sbjct: 231 QGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSC 288

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +   
Sbjct: 289 SQGGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDY 348

Query: 499 WTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSPD     L DLY ++ E   + YE+      ++  R + A  L+  +    F TG
Sbjct: 349 ITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTG 407

Query: 558 HPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHF 611
             + TF D  N      ++V  +  SNLC EI L +        E ++C       LA +
Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------LAAY 461

Query: 612 ANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               FD + +    R A   VR LDN++D   + +E+A  +    R++G+G+  F S L 
Sbjct: 462 VLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFASYLA 520

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y   +A E   ++ E + +  I ASV+LA+E+GA      + + +G  PID    
Sbjct: 521 DNFFTYE--DANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRYGRGELPID---W 575

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +  DEL ++    + W+EL+K +K  G+RNS   A+ P  + + +   +  I+P    
Sbjct: 576 YKKTVDEL-VDPVYEMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGI 634

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK +  G F  V                            I N+E   D         
Sbjct: 635 VSVKGSKEGQFNQV----------------------------IPNVENNAD--------- 657

Query: 849 FEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------DFIY 889
             ID +W LI+  ++         QK++DQA S N   D PS  K           D ++
Sbjct: 658 -VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDDMLF 715

Query: 890 RQAWLMGLKTTYYLRSRSA 908
            Q +  GLKT YY   R  
Sbjct: 716 AQYY--GLKTLYYANVRDG 732


>gi|120403036|ref|YP_952865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955854|gb|ABM12859.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 722

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 292/653 (44%), Gaps = 75/653 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  ++G    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 98  DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTTLAEKLV 157

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 158 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 215 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 275 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 331

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I ++D  N  +P    G
Sbjct: 332 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--G 388

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+  E               CNLGS+N+         D    A TI
Sbjct: 389 KITHSNLCSEILQVSTPSEFNDDLSYKKIGKDISCNLGSLNIA-----KAMDSPDFAQTI 443

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +
Sbjct: 444 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTN 503

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG A+  F+ S +  G F       + E +     +L  +
Sbjct: 504 IYFYTVLYHALRASNRIAIERGTAFKGFEKSKYASGEFFDKYTEQVWEPKTDKVRQLFTD 563

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
              R+P    W +LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 564 AGIRIPNQDDWKQLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEG 623

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ NE                       N+E   D        A+EI   
Sbjct: 624 KIGRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYE 652

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +I++ +   + +DQ  SL L+  D  + ++++     AW  G+KT YY+R R
Sbjct: 653 KVIDTYAAATQHVDQGLSLTLFFKDTATTREVNKAQIYAWRKGIKTLYYIRLR 705


>gi|51597272|ref|YP_071463.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949726|ref|YP_001400044.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|186896376|ref|YP_001873488.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590554|emb|CAH22195.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|152961221|gb|ABS48682.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|186699402|gb|ACC90031.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 716

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLG
Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRHIGKDISCNLG 420

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D      +I  A+R L  V ++ N  ++   +K N    AIGLG M 
Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 475

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y S EA++  +     +++HAI AS +LA ER   S FKG  +D+  + 
Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531

Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767
             S    ++  ++    +T+R+                W  L++ V   G+ N N  A+ 
Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P                     +V+ ++ R              
Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIRK------------- 615

Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +G IG +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710


>gi|56694762|ref|YP_164482.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 2]
 gi|52843314|gb|AAU88105.1| large subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 975

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 184/656 (28%), Positives = 292/656 (44%), Gaps = 72/656 (10%)

Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------E 341
           GLQ  + Y+ ++L  I+G  +E     + R+A  LA + ++   R V             
Sbjct: 333 GLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACR-SDLAGRVVFGRDASWLEMFTY 391

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-----TVPDDLYGIFGALQENAMLAKY 396
           F+N   +   + STP +   GTR P  SSC+L      T    L  I    Q+ A +   
Sbjct: 392 FFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAI---TQDVAPILAR 448

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           SGG+G        L          +  ++P LK  +    A N    R   V  YLE WH
Sbjct: 449 SGGIG--------LCLQSFNDRPGNASIMPALKALDSIVAAYNDQSLRPTGVTVYLEPWH 500

Query: 457 IDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSD 509
            D+   L ++    G++ RR  ++ +A W+PDLF KR+       ++  WTLFS      
Sbjct: 501 SDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKDVVWTLFSNRGGMH 560

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L   +G+EFE  Y   E Q   GE    + + A A+ R   T    TG P++ FKD  N 
Sbjct: 561 LSSFHGEEFEKLYLCQEEQG-FGEAVPIQDV-AYAIVRAAAT----TGSPFVMFKDAVNR 614

Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
                  G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R  
Sbjct: 615 HYIYDTQGSAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFSRLRESVRAC 674

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V +++ +ID       + ++ +   R++G+G+ G  +A   L +  AS E  E+     E
Sbjct: 675 VLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKLGLDLASEEFRELNRHIAE 734

Query: 689 FISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLP 745
            +   A+ AS  L    GA  +  FK S++  G F  +   G       E          
Sbjct: 735 VMLLAAMQASNALCLH-GARPFREFKRSVFRAGRFHWEGFPGARPRYEGE---------- 783

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +   G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ 
Sbjct: 784 WERLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTL 843

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESA 860
           L+ EL++       +   L   D    ++ER    L   H      TAF+ D   LI+  
Sbjct: 844 LLRELRE-TFSGRRLNEVLDGLDAKQWSVERALPCLAADHPLRRFKTAFDYDQELLIDLC 902

Query: 861 SRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           + R  ++D +QS+ LY+ E +        L  +   A+  GLKT  YY + R AT+
Sbjct: 903 ADRAPYVDHSQSMTLYVTERADGTLPASALVRLLAHAYKRGLKTGMYYCKVRKATN 958


>gi|50122259|ref|YP_051426.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612785|emb|CAG76235.1| ribonucleoside-diphosphate reductase 2 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 715

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 191/692 (27%), Positives = 316/692 (45%), Gaps = 78/692 (11%)

Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313
           RY +EEG  +A +L +    FD +       Y   F F+ +LG    Y  Y L   +G R
Sbjct: 65  RYLVEEGYYEAEVLDQ--YHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 122

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371
            +E  +     VA+ LA  +T     A    + + S  F  +TPT  N G +   +L SC
Sbjct: 123 YLERYEDRVCLVALALAKGDT---TLASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+ 
Sbjct: 180 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 240 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 299

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP +V  ++ +   E  +  E Y    +   I+   +I A   ++ +  
Sbjct: 300 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKARDFFQILAE 357

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599
           + FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   
Sbjct: 358 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 415

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+    A+  F       T+  A+R L  V D+ +  ++   +K N    AIGL
Sbjct: 416 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAIGL 470

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y + EAV+  +     ++FHAI AS  LA ER   +S F+ S + 
Sbjct: 471 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 530

Query: 718 QGVF----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            G +          PI +     E+ ++  ++  ++  W  L++ V   G+ N N  A+ 
Sbjct: 531 TGEYFDKYIEQQWEPITARA--RELFEQAGIHIPNQQDWAALRESVIAHGIYNQNLQAVP 588

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P                     +V+ ++ R    E  I  + Y 
Sbjct: 589 PTGSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYP 624

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N     D+L+  +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 625 APYMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 678

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
                AW  G+KT YY+R R   ++E + ++G
Sbjct: 679 KAQIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 709


>gi|149365456|ref|ZP_01887491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
 gi|218929726|ref|YP_002347601.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|115348337|emb|CAL21270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CO92]
 gi|149291869|gb|EDM41943.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
          Length = 693

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 185/686 (26%), Positives = 310/686 (45%), Gaps = 71/686 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 46  IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 104

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 105 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 161

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 162 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 221

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 222 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 281

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 282 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLG
Sbjct: 340 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 397

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D      +I  A+R L  V ++ N  ++   +K N    AIGLG M 
Sbjct: 398 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 452

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF 721
               L    + Y S EA++  +     +++HAI AS +LA ER + +  F  S +  G F
Sbjct: 453 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAF 512

Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I          +  +  +  +   ++  W  L++ V   G+ N N  A+ PT +I+
Sbjct: 513 FSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSIS 572

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P                     +V+ ++ R    E  I  + Y    + N
Sbjct: 573 YINHSTSSIHP---------------------IVSPIEIR---KEGKIGRVYYPAPYMTN 608

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                D+L + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     A
Sbjct: 609 -----DNL-EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYA 662

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKG 918
           W  G+KT YY+R R   ++E + ++G
Sbjct: 663 WKKGIKTIYYIRLRQ-MALEGTEVEG 687


>gi|22125125|ref|NP_668548.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45442236|ref|NP_993775.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808371|ref|YP_652287.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108811298|ref|YP_647065.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145598905|ref|YP_001162981.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|165925303|ref|ZP_02221135.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939924|ref|ZP_02228462.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008354|ref|ZP_02229252.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212442|ref|ZP_02238477.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398490|ref|ZP_02304014.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421233|ref|ZP_02312986.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423147|ref|ZP_02314900.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167468721|ref|ZP_02333425.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           FV-1]
 gi|170023363|ref|YP_001719868.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|229838203|ref|ZP_04458362.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895451|ref|ZP_04510623.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|229898685|ref|ZP_04513830.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901544|ref|ZP_04516666.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|270489730|ref|ZP_06206804.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294504448|ref|YP_003568510.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21957984|gb|AAM84799.1|AE013726_2 ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis KIM 10]
 gi|45437100|gb|AAS62652.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774946|gb|ABG17465.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Nepal516]
 gi|108780284|gb|ABG14342.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Antiqua]
 gi|145210601|gb|ABP40008.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Pestoides F]
 gi|165912143|gb|EDR30782.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922910|gb|EDR40061.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992736|gb|EDR45037.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206373|gb|EDR50853.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960722|gb|EDR56743.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050994|gb|EDR62402.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057317|gb|EDR67063.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169749897|gb|ACA67415.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|229681473|gb|EEO77567.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|229688233|gb|EEO80304.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694569|gb|EEO84616.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701606|gb|EEO89633.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|262366434|gb|ACY62991.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270338234|gb|EFA49011.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294354907|gb|ADE65248.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320016141|gb|ADV99712.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 716

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 186/696 (26%), Positives = 313/696 (44%), Gaps = 91/696 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  IEEGYYEKEVLDQY-DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  
Sbjct: 128 YEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D  
Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 305 NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 362

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLG
Sbjct: 363 SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLG 420

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D      +I  A+R L  V ++ N  ++   +K N    AIGLG M 
Sbjct: 421 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMN 475

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y S EA++  +     +++HAI AS +LA ER   S FKG  +D+  + 
Sbjct: 476 LHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERA--SHFKG--FDESDYA 531

Query: 723 IDSIGLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIA 767
             S    ++  ++    +T+R+                W  L++ V   G+ N N  A+ 
Sbjct: 532 --SGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVP 589

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P                     +V+ ++ R              
Sbjct: 590 PTGSISYINHSTSSIHP---------------------IVSPIEIR-------------K 615

Query: 828 DGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +G IG +      + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 616 EGKIGRVYYPAPYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 710


>gi|270339460|ref|YP_003331540.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
 gi|254940176|gb|ACT88319.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
          Length = 786

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 181/663 (27%), Positives = 304/663 (45%), Gaps = 73/663 (11%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----FYNLLS 347
           LGLQ  + Y+  +L ++    +E    FF+R+A   A   T + ++A+      ++ +  
Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192

Query: 348 SFHFMCS-------TPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398
           SF F  S       TP +   G     L+SC+L +  + D    I   +++ A +    G
Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252

Query: 399 GLGNDWTPVRGLGAHIHGTNGK-----SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           G+G            +   N K     ++GV+P LK+ +   +A+N   +R   VC Y+E
Sbjct: 253 GIG----------ICLQNFNKKLSKECTKGVLPLLKLLDSMTIAINSDSERPTGVCIYVE 302

Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDE 506
            WH D+   L++R     D+  R  ++ +  W PDLF  R  ++ G      WTLF  D 
Sbjct: 303 PWHADIRSILNMRGMLASDENSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFD-DA 361

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            S L  LYGKEF   YE  E  A  G   +  +  A  + R  +     TG P++ FKD 
Sbjct: 362 ASHLSKLYGKEFNEEYERLE-AAGMGVDSLPIQEMAYLIVRSAIM----TGSPFLMFKDA 416

Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYDKLA 622
           CN        G  + +SNLCTEI   ++  +  VCNL SINL   L   A++Q  Y  + 
Sbjct: 417 CNRHYHFDTRGDALTTSNLCTEIIQKATDTKHGVCNLISINLPQCLRRIAHDQSLYFSIP 476

Query: 623 STIR---TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             IR   TA   ++ ++       E A +    +R++GLG+ G  +    L +   S EA
Sbjct: 477 LLIRAAYTATIFVNAMMRAGNFPTEAAMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEA 536

Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             +  + +E +   AI AS  L +     + +F+ S++ +G+ P D+      +  +   
Sbjct: 537 RRLNRQILESLLLGAIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFK--- 593

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W +L+  +   G+ NS  +A+ PT + + +   S+   P + NL+ K   +G+
Sbjct: 594 ------KWQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGE 647

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDP 853
               N  L+  +++    + A +S +   + +  +I     DL   H      TAFE D 
Sbjct: 648 ILRPNLQLMRTIRRLFPRECARLSVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQ 707

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRS 907
             LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + 
Sbjct: 708 RQLIDMCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKK 767

Query: 908 ATS 910
           AT+
Sbjct: 768 ATN 770


>gi|310764902|gb|ADP09852.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 716

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 179/645 (27%), Positives = 288/645 (44%), Gaps = 69/645 (10%)

Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           R F F+ +LG    Y  Y L   +G R    + F  RV M         +  A+   + +
Sbjct: 97  RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALMDEI 154

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ L   +  I+ E Y
Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYALPFADVSIS-EKY 333

Query: 526 ERQADRGEIK-VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
               D   I+  F  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNL
Sbjct: 334 PEMLDDTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNL 389

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS +E           +   CNLGS+N+ AH      D    A T+  AVR L
Sbjct: 390 CSEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGL 444

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  + H++   ++ N    AIGLG M     L    I Y S   ++  +     ++
Sbjct: 445 TAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVT 504

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTS 742
           +HA+  S +LA+ER   +S F  S +  G +    +G         +A +     +   S
Sbjct: 505 YHALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPS 564

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  LK+ V   G+ N N  AI PT +I+ I   + SI P                  
Sbjct: 565 QQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------ 606

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +V+ ++ R       +    Y+     N     +D + ++  A++I P  +I++ + 
Sbjct: 607 ---IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQALYRDAYDIGPEAIIDTYAE 654

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 655 ATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699


>gi|289423476|ref|ZP_06425278.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156110|gb|EFD04773.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 704

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 176/657 (26%), Positives = 294/657 (44%), Gaps = 82/657 (12%)

Query: 286 KYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           KY   F FE   Y+     Y+ Y L  +  +  +E  +   +  ++ +A  +T   K   
Sbjct: 80  KYICSFGFEFMSYMSASKFYENYALKTDDGKKILENYEDKILICSLAIASGDTRVAKDVA 139

Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    L    F  +TPT  N G  R  QL SCFL TV D   GI  A+     L+K  GG
Sbjct: 140 K---RLIKQEFQPATPTFLNLGRKRAGQLVSCFLLTVEDSCEGISYAVASANHLSKIGGG 196

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + T +R  G  I G  G S GV+   K+   +    NQ G R+GA   YL   H D 
Sbjct: 197 VALNLTRLRARGESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADF 256

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +  +D +K   D+R R   ++    IPD+FMK   +N     F P  +   + L+  +  
Sbjct: 257 DALMDTKKINADERVRLATLSIGAIIPDVFMKLAEKNEVGYAFYPHSIYKKYALHLDDLN 316

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y++     +I+  ++I+   +  ++     E+G+P+I + D  N     + +G+V
Sbjct: 317 MN-EWYDKLVADPDIRK-KEINPRVILTRIAATQMESGYPYIVYIDTANKNHTLKGLGMV 374

Query: 580 HSSNLCTEI-------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             SNLC EI             + NS   +   CNLGS+N+      N  +  ++   I 
Sbjct: 375 RMSNLCCEIFQYQSPSHIEGYGSKNSQWGQDISCNLGSLNIA-----NIMEGKEMGHAID 429

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L +V D  N   +   K  N    ++GLG M     L   +I Y S EAV+  + 
Sbjct: 430 VAIRFLTDVSDRTNIEEVPTVKNGNDKSHSVGLGAMNLHGYLMKNNIRYDSDEAVDFCNV 489

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL 736
               + +HAI  S+++A+E+G  +  F+ S + +G         + ID +    +VR   
Sbjct: 490 FFAMMRYHAIKTSMKIAKEKGQTFDGFEKSEYSKGESSDVLGKYYQIDYLPKTDKVR--- 546

Query: 737 AMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           A+     +P    W +L  +VK +G+ N+  MAIAPT +I+ +   + S+ P  + + V+
Sbjct: 547 ALFEGMMIPRKEDWKDLLDQVKEVGIYNAYLMAIAPTQSISYVQNATSSVMPITEQIEVR 606

Query: 793 SNMSGDFTVVN--SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             + GD T +    FL NE             +L +                  + +A+ 
Sbjct: 607 --IYGDSTTIYPMPFLTNE-------------NLLF------------------YKSAYN 633

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            D + +I+  +  Q  +DQ  S  L++ D+ + + +   Y  A+  GLK+ YY R++
Sbjct: 634 TDMLKVIDVVAAVQDHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 690


>gi|294853319|ref|ZP_06793991.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818974|gb|EFG35974.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 738

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 184/663 (27%), Positives = 289/663 (43%), Gaps = 83/663 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAVRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYQD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLR 904
           Y+R
Sbjct: 717 YIR 719


>gi|296170901|ref|ZP_06852438.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894450|gb|EFG74194.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 701

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 176/674 (26%), Positives = 285/674 (42%), Gaps = 100/674 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA-----FEYLGLQ-----------ILYD 303
           I++ V+ARL  + + D    Y      Y R  A      E LG++           +L +
Sbjct: 73  IQDLVEARLTADGLDDVARAYAV----YRRQHAELRATKELLGVRDELKLSVAAVTVLGE 128

Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPT 357
           RY L  + G  +E       RVA  +A  E +       + A  F  LL    F+ ++PT
Sbjct: 129 RYLLRDDRGRPVESTGEMMDRVADHVAGAEEKFRPGSSAQWAQRFSALLRGLEFLPNSPT 188

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+GT    LS CF+  V D L+ IF AL + A + +  GG G  ++ +R  G  +  T
Sbjct: 189 LMNAGTELGLLSGCFVLPVDDSLHSIFTALAQGADIHQAGGGTGYTFSHLRPTGDLVVRT 248

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G + FL++ +  A  ++ GG+R+GA  A L+  H D+ +F+  +  +  +    +
Sbjct: 249 GGTASGPLSFLRLFDYAAAVISMGGRRRGASMAVLDVSHPDIYDFVTAKSGSQTE---LN 305

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V +     L +P                              K  
Sbjct: 306 QFNLSVGVTDEFLRAVGRGGSHRLVNPRTG---------------------------KTA 338

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
             +SA  L+  +       G P + F D  N  +P   +G + ++N C E+ L       
Sbjct: 339 ATVSAADLFTAICEAAHRCGDPGLVFLDTINRANPTPALGRIEATNPCGEVPLLPYES-- 396

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGSINL         D+++L +    AVR LD+VID++     + + +    R IG
Sbjct: 397 --CNLGSINLARMVGAGGVDWERLTAVAELAVRFLDDVIDVSRLPFPEVEAATTATRKIG 454

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S   V +A      ++  A +AS  LA+ERG + +F  S + 
Sbjct: 455 LGVMGLAELLAGLGIPYDSERGVRLAARIARTVNRAAHAASERLAEERGPFPAFGHSRF- 513

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G  P                                    RN+   +IAPT TI+ I G
Sbjct: 514 AGSAP-----------------------------------RRNAQLTSIAPTGTISLIAG 538

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  I+P +   Y+++ +      VN       + R  +   +I+++  H G +     +
Sbjct: 539 TSAGIEPMFAIAYIRAVIGRRLLEVNPCFDRLARDRGFYHPDLIAEIARH-GGVRRDPHV 597

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P +++    TA EI P W +   +  Q+ +D A S  + L  E + + +  IY  AW   
Sbjct: 598 PAEVRAAFPTAAEIAPEWHLRMQAAVQRHVDAAVSKTVNLPAESTVEDVRTIYLAAWRAR 657

Query: 897 LK--TTYYLRSRSA 908
           +K  T Y   SR+ 
Sbjct: 658 VKGITVYRYGSRAG 671



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V +R+G +  FD ++I  AI        G+ A  +      +  L  ++V   L     
Sbjct: 13  NVRRRDGRLVPFDVARIETAI--------GRAAREAGHRDPQLPALLARSVADALVGRFR 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + I  +E IQD VE  L   G   + R Y +YR + +++RA +
Sbjct: 65  SGIPTVEGIQDLVEARLTADGLDDVARAYAVYRRQHAELRATK 107


>gi|262341078|ref|YP_003283933.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272415|gb|ACY40323.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 570

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 178/618 (28%), Positives = 268/618 (43%), Gaps = 106/618 (17%)

Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           Y   I G  +   E P   + R+A   A K  +K K   +F+N+      + STP + N 
Sbjct: 27  YLTTIKGGYLLDGETPFEAYKRLAKNAA-KILKKPKIEEKFFNIFWKGWLIPSTPVMVNL 85

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI-HGTNGK 420
           GT      SCF   + D +Y I+    E A+L+K+ GG   D++ VR +G+ I +GT G 
Sbjct: 86  GTEKGLPISCFSGRIGDSMYEIYRKNLEMAILSKHGGGTSYDFSLVRPIGSPIKNGTLGS 145

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIPF+K  +   VA  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H+++
Sbjct: 146 SDGVIPFIKSYDSAIVASKQGRTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               I D FM+ V +  G                           ER             
Sbjct: 206 QGVIISDSFMEEVLKKNG--------------------------KER------------- 226

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEET 597
              + W   L    +TG P++ FKD  N   P+  +  G+ +H SNLC+EI L +    T
Sbjct: 227 ---SFWINTLKERVKTGEPYLFFKDNANKNLPENWEKNGLKIHHSNLCSEIMLPTDENHT 283

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NL  +         K  +T+  A+  LD V+        N   IE A +   
Sbjct: 284 LVCCLSSLNLYKYVE------WKNTNTVFYAILFLDAVLQEFIDKGKNIQGIEDAVRFAE 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +G+ S L    IP+ S ++  +       I   +  A+  LA+E G     
Sbjct: 338 KSRALGLGALGWHSYLQSNMIPFISVQSEILTHNIFRKIQLESQKATKYLAKEYGE---- 393

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S W+ G                                     G RN   MA+AP  +
Sbjct: 394 --SEWNIGT------------------------------------GRRNLTLMAMAPNRS 415

Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            A +  G+SQ ++P   N+YV  +  G     N +L   L +       +   +    GS
Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKMLIEIGYNLPEVWEQIANEKGS 475

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
              +  + ++ K +     EI+ + LI  AS RQK+IDQ QS+NL   + +  K ++ ++
Sbjct: 476 CLGLTALSEEQKNVFRCFKEINQLELIRQASIRQKYIDQGQSINLSFHQNTPAKYINKVH 535

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW +GLK+ YY RS S
Sbjct: 536 LEAWKIGLKSLYYYRSES 553


>gi|326381480|ref|ZP_08203174.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199727|gb|EGD56907.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 705

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 192/697 (27%), Positives = 296/697 (42%), Gaps = 104/697 (14%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310
           PE   +Y  E VK    H                Y + F F  +LG    Y  Y L   +
Sbjct: 53  PEVLAKYDREFVKLLFGH---------------AYSKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368
           G R +E  +     VA+ LA  +T   +  V+    +    F  +TPT  NSG +   + 
Sbjct: 98  GKRYLERFEDRVCMVALTLADGDTALARHLVD---EIMDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + VR  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKRIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVAL 545
             +    N    LFSP    D+  +YGK F    ++ E +    DR   K   KI A   
Sbjct: 275 TFQLAKDNDDMYLFSP---YDVERVYGKPFADVNVSDEYHAMVEDRRIRK--SKIKAREF 329

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------- 596
           ++ +  + FE+G+P+I F+D  N  +P    G V  SNLC+EI   S+  E         
Sbjct: 330 FQTLAELQFESGYPYIMFEDTVNRSNPID--GKVTHSNLCSEILQVSTPSEFNEDLTYSQ 387

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
                 CNLGS+N+         D      +I TA+R L  V D  +  ++   K++N  
Sbjct: 388 VGKDISCNLGSMNIA-----KTMDSPDFGQSIETAIRGLTAVADQTSIESVPSIKRANDE 442

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSF 711
             AIGLG M     L    I Y S E ++  +     + FHAI AS ++A+ERG  ++ F
Sbjct: 443 GHAIGLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTVLFHAIRASNKIAKERGTTFAGF 502

Query: 712 KGSLWDQG--------------------VFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           + S +  G                    +F     G   ++  +  ++  ++  W ELK 
Sbjct: 503 EKSKYASGEFFDKYTDQVWEPATEKVREIFANAGPGESGQLFSDNGIHIPTQDDWRELKA 562

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL 810
            V+  G+ N N  A+ PT +I+ I   + SI P    + + K    G       +L N+ 
Sbjct: 563 SVQKYGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                 N+E   D        A+EI    +I++ +   + +DQ 
Sbjct: 622 ----------------------NLEYYQD--------AYEIGYEKIIDTYAAATQHVDQG 651

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            SL L+  D  S + ++     AW  G+KT YY+R R
Sbjct: 652 LSLTLFFKDTASTRDVNKAQIYAWRKGIKTLYYIRLR 688


>gi|256820789|ref|YP_003142068.1| ribonucleotide-diphosphate reductase subunit alpha [Capnocytophaga
           ochracea DSM 7271]
 gi|315223932|ref|ZP_07865777.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256582372|gb|ACU93507.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           ochracea DSM 7271]
 gi|314946104|gb|EFS98108.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 551

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 168/584 (28%), Positives = 256/584 (43%), Gaps = 116/584 (19%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  +++      S+P   N GT      SCF   VPD + GI   L E  M  K  GG  
Sbjct: 53  FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EE
Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL ++    D      ++     +PD +M+ +                            
Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578
                     G+++  R      LW ++L    + G P+I F D  N   PQ +     +
Sbjct: 202 ----------GDVEKRR------LWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDML 245

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + SSNLC+EI L SS +E+ +C L S+NL        FD  K    ++ AV  LD V+  
Sbjct: 246 IRSSNLCSEIMLPSSEDESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLS- 298

Query: 639 NCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
               IEK K + +          HRA+GLG++G+ S L    IP+ S EA +    +  +
Sbjct: 299 --EFIEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFRY 356

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A  A+ ELA   G     KG                                    
Sbjct: 357 IREEADKATKELAHIYGEPEILKG------------------------------------ 380

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L  
Sbjct: 381 ------YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQ 434

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L+++ L +E +   ++ ++GS+ +++ +    K +  T  EI PM +I  A++RQ +ID
Sbjct: 435 LLEEKGLNNEEVWRSIRLNNGSVQHLQELSQLEKNVFKTFKEISPMEIISQAAQRQAYID 494

Query: 869 QAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           Q QSLNL +  PS    + ++ +  +AW +G+K+ YY RS+S  
Sbjct: 495 QTQSLNLNI--PSAMPIRDVNKVLIEAWKLGVKSLYYQRSQSVA 536


>gi|228938566|ref|ZP_04101174.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971445|ref|ZP_04132071.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978058|ref|ZP_04138437.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228781719|gb|EEM29918.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228788312|gb|EEM36265.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821164|gb|EEM67181.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939075|gb|AEA14971.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 682

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++I+   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|157955367|gb|ABW06069.1| NrdE [Bacillus thuringiensis serovar galechiae]
          Length = 694

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++I+   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|116670902|ref|YP_831835.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           sp. FB24]
 gi|116611011|gb|ABK03735.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter sp. FB24]
          Length = 727

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 293/660 (44%), Gaps = 74/660 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+ LA  +   E+ A++  
Sbjct: 108 YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGD---EQLALQMV 164

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N+G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 165 DEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 224

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 225 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 284

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   ++    LFSP    D+  +YG  F    
Sbjct: 285 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSP---YDVERVYGMPFSDVS 341

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   IK   KI A   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 342 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRENPID--GKII 398

Query: 581 SSNLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S         S ++T     CNLGS+N+         D      TI TA
Sbjct: 399 MSNLCSEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 453

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ N  ++    + N    AIGLG M     L    + Y S E ++  +   
Sbjct: 454 IRSLSAVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 513

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSRL 744
             + +HA+ AS +LA + G  +  F+ S +  G F         + +      + +   +
Sbjct: 514 YSVVYHAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHI 573

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 574 PTQDDWRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 633

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L N+                       N+E   D        A+EI    +I++
Sbjct: 634 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 662

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 663 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 721


>gi|256059455|ref|ZP_05449657.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 738

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 187/677 (27%), Positives = 296/677 (43%), Gaps = 84/677 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 106 FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 165

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 166 ---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 222

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 223 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 282

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 283 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 342

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 343 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 400

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC EI   S +             +   CNLGS+N+ A       D  
Sbjct: 401 PID--GRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 453

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 454 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 511

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 512 EEGVDFTNIYFYTVAYHAMRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 568

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 569 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 627

Query: 784 PSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + + K    G      +F+ N+                       N+E   D   
Sbjct: 628 PIVSKIEIRKEGKIGRVYYPAAFMTND-----------------------NLEYYLD--- 661

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT Y
Sbjct: 662 -----AYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIY 716

Query: 902 YLRSRSATSVEKSTLKG 918
           Y+R R   ++E + ++G
Sbjct: 717 YIRLRQ-MALEGTQVQG 732


>gi|332882773|ref|ZP_08450384.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679275|gb|EGJ52261.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 551

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 167/581 (28%), Positives = 255/581 (43%), Gaps = 110/581 (18%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  +++      S+P   N GT      SCF   VPD + GI   L E  M  K  GG  
Sbjct: 53  FKEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTS 112

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EE
Sbjct: 113 GYFGELRSRGSAVT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEE 171

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL ++    D      ++     +PD +M+ +                            
Sbjct: 172 FLQIK----DVEFPIQNLFFGICVPDYWMQEMID-------------------------- 201

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578
                     G+++  R      LW ++L    + G P+I F D  N   PQ +     +
Sbjct: 202 ----------GDMEKRR------LWARVLESRQQKGLPYIMFTDNANRNRPQVYKDKDML 245

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
           + SSNLC+EI L SS EE+ +C L S+NL        FD  K    ++ AV  LD V+  
Sbjct: 246 IRSSNLCSEIMLPSSEEESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLSE 299

Query: 638 -----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                   + ++ A+K    HRA+GLG++G+ S L    IP+ S EA +    +   I  
Sbjct: 300 FIEKTKGNYYLQAARKFAMRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARTFRHIRE 359

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  A+ ELA   G     KG                                       
Sbjct: 360 EADKATKELAHIYGEPELLKG--------------------------------------- 380

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L   L+
Sbjct: 381 ---YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLE 437

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L +E +   ++ ++GS+ +++ +    K +  T  EI PM ++  A++RQ +IDQ Q
Sbjct: 438 EKGLNNEDVWRSIRLNNGSVQHLQELTQLEKNVFKTFKEISPMEIVSQAAQRQAYIDQGQ 497

Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           SLNL +  PS    K ++ +  +AW +G+K+ YY RS+S  
Sbjct: 498 SLNLNI--PSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVA 536


>gi|304385473|ref|ZP_07367818.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
 gi|304328680|gb|EFL95901.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
          Length = 721

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 181/718 (25%), Positives = 318/718 (44%), Gaps = 88/718 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K+  +A   +   L   +     E+ ++A L+ +    FD +    D    +
Sbjct: 32  QEALAAFLKENVQANTKQFASLRERFDYLLEEDYIEAELMEK--YSFDFIEKLYDYLRAQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N +   + + F  RVAM         E+ A++  + +  
Sbjct: 90  NFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADEIIH 148

Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G +H  +L SCFL    DD+  I   +     L+K  GG+G + T +
Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523
              D++ R   ++    +PD F + +  +    LFSP  V     +YGK +  AY    +
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVE---KVYGKPY--AYVDITK 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+   +  EIK + K+ A  +  ++  +  E+G+P++   D  N  +P    G +  SN
Sbjct: 324 EYDNLVNNPEIKKY-KVKARNIENEISKLQQESGYPYVVNVDTANRENPI--YGKIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        +++    T +     CNLGS N++   A   F       ++ T VR 
Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +   +  N     IGLG MG    L   H+ Y  P++VE        +
Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743
           ++  + AS ++A+ERG  + +F+ S +  G     +     G  +    EL   ++  + 
Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +LK+ V   G+ + N MA+APT +I+ I   + S+ P                   
Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +VN +++R    E  I  + Y    + N      D  K + +A++ID   +++  +  
Sbjct: 597 --IVNRVEER---QEKKIGKIYYPAPYLSN------DTLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++    P G              + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|261820461|ref|YP_003258567.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261604474|gb|ACX86960.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 721

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 190/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%)

Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313
           RY +EEG  +A +L +    FD +       Y   F F+ +LG    Y  Y L   +G R
Sbjct: 71  RYLVEEGYYEADVLDQ--YSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 128

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371
            +E  +     VA+ LA  +T     A    + + S  F  +TPT  N G +   +L SC
Sbjct: 129 YLERYEDRVCLVALALAKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 185

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+ 
Sbjct: 186 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 245

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 246 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 305

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP +V  ++ +   E  +  E Y    +   I+   +I A   ++ +  
Sbjct: 306 LAKNNQVMYLFSPYDVEQVYGMPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 363

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599
           + FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   
Sbjct: 364 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 421

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+    A+  F       T+  A+R L  V D+ +  ++   +K N    AIGL
Sbjct: 422 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAIGL 476

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y + EAV+  +     ++FHAI AS  LA ER   +S F+ S + 
Sbjct: 477 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 536

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    I            E+ ++  ++  ++  W  L++ V   G+ N N  A+ PT
Sbjct: 537 TGEYFDKYIEQQWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 596

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P                     +V+ ++ R    E  I  + Y   
Sbjct: 597 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 632

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            + N     D+L+  +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 633 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 686

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 687 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 715


>gi|85860286|ref|YP_462488.1| ribonucleoside-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
 gi|85723377|gb|ABC78320.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 551

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 169/618 (27%), Positives = 268/618 (43%), Gaps = 100/618 (16%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET-EKEKRAVE----FYNLLSSFHF 351
           L +L +RY +    G+ +E P+  F RVA  ++  E  + E R+ E    FY +++S  F
Sbjct: 12  LLVLRERYLIRDEAGTLLETPEELFRRVACSVSQGENNDPEGRSAEMEEAFYEMMTSLEF 71

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QL++CF+  V D L  IF +++  A + +  GG G  ++ +R   
Sbjct: 72  LPNSPTLMNAGRPLGQLAACFVLPVEDSLDSIFDSVKLTAKIHQTGGGTGFSFSRLRPKN 131

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F++V N    A+ QGG R+GA    L   H D+ EF+ ++++  +
Sbjct: 132 DVVKSTMGVASGPVSFIRVFNCATEAIKQGGTRRGANMGILRIDHPDIMEFVAIKRDPAE 191

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  I D FM+   +N    L +P                           
Sbjct: 192 ----LTNFNLSVAITDEFMRSYEENRDVALINPRTK------------------------ 223

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              K   K++A  L R +    + +G P + F D  N  +P  HVG + ++N C E  L 
Sbjct: 224 ---KAAGKVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPCGEQPLL 280

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   C LGSINL     N   D+ +L       VR LD+V++++ +  E+ +    
Sbjct: 281 PYES----CCLGSINLSRIVRNGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEEIRAMTS 336

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MGF   L  L IPY SP+A     E +  I   +  AS  LA++RG + +F
Sbjct: 337 GNRKIGLGVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEKRGPFPNF 396

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS+WD+                                   K +  RN+    IAPT T
Sbjct: 397 KGSVWDR-----------------------------------KNLLQRNATTTTIAPTGT 421

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           ++ + G S  ++P Y   Y +    G    V   L  + K R   DE             
Sbjct: 422 LSILAGTSSGVEPIYDIRYKRILPGGIEVEVEDPLWRKAKDRPDADELR----------- 470

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK--LDFIY 889
                     +++   A+E+ P   +      Q  +D A S  + L E +     LD IY
Sbjct: 471 ----------RRLFRKAYEVSPFAHLNIQRTFQSSVDNAVSKTVNLPETATADDILD-IY 519

Query: 890 RQAWLMGLKTTYYLRSRS 907
             A+ MGLK T   R++S
Sbjct: 520 VAAYRMGLKGTTVFRNKS 537


>gi|238897539|ref|YP_002923218.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465296|gb|ACQ67070.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 762

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 176/678 (25%), Positives = 291/678 (42%), Gaps = 57/678 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG   S +  ++  ++  A  GL  VS   V   +    YDG+   D+   +I 
Sbjct: 5   LLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++        P          L+ E+  + ++ G
Sbjct: 65  AAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPP----------LF-EHVSKMVKMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + + RD  F Y  ++ L  +Y +   +N    E  Q  +
Sbjct: 114 KYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESAQFLY 173

Query: 322 MRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           + VA  L  +   + +      FY+ +S+F     TP +  +G R P  Q SSC L    
Sbjct: 174 ILVAACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIM--AGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R  G+ I        G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 292 CSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+  +     EF+  Y  YE   D   I+  +KI AV L+  ++    
Sbjct: 352 EITLFSPSDVPGLYAAFFSDQSEFQRLYVQYEADPD---IR-HKKIKAVELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVC----- 600
            TG  ++   D CN  SP    V  V  SNLC EI L        N    E A+C     
Sbjct: 408 STGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDEKGEIALCTLSAF 467

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLG+IN L          D+L      + R LD ++D   + I  A++S  + R +G+G+
Sbjct: 468 NLGAINSL----------DELQELATLSARALDALLDYQHYPIPAAQRSAVSRRTLGIGV 517

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           + F   L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + +G+
Sbjct: 518 INFAYYLARNGVRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGI 577

Query: 721 FPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PID+    L ++  E          W  L++ +   G+R+S   ++ P+ T + I   +
Sbjct: 578 LPIDTYKKDLDDIHQE-----PLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNAT 632

Query: 780 QSIDPSYQNLYVKSNMSG 797
             I+P    + +K++  G
Sbjct: 633 NGIEPPRGYVSIKASKDG 650


>gi|196040726|ref|ZP_03108025.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
 gi|196028516|gb|EDX67124.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
          Length = 682

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|228945049|ref|ZP_04107410.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814718|gb|EEM60978.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 682

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|183981656|ref|YP_001849947.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
 gi|183174982|gb|ACC40092.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
          Length = 721

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 289/653 (44%), Gaps = 75/653 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +    ++ V
Sbjct: 97  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDATLAEKLV 156

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 213

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 214 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 273

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 330

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G
Sbjct: 331 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--G 387

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 388 KITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----RTMDSPDFAQTI 442

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L   HI Y S E V+  +
Sbjct: 443 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEGVDFTN 502

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F  S +  G F       + E + E    L  +
Sbjct: 503 IYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVRQLFAD 562

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 563 AGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEG 622

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ NE             +L Y+                    A+EI   
Sbjct: 623 KIGRVYYPAPYMTNE-------------NLDYYQD------------------AYEIGYE 651

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 652 KIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLR 704


>gi|42780544|ref|NP_977791.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10987]
 gi|42736464|gb|AAS40399.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus ATCC 10987]
 gi|157955323|gb|ABW06036.1| NrdE [Bacillus thuringiensis serovar tochigiensis]
          Length = 694

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|30261451|ref|NP_843828.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Ames]
 gi|50196926|ref|YP_052620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|50082988|gb|AAT70128.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 694

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|329738367|gb|AEB97331.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
          Length = 786

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 174/601 (28%), Positives = 272/601 (45%), Gaps = 59/601 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAM-LAKYSGG 399
           F+  LSS   +  TP +   GT     +SCFL  +   +    F  + E  + +    GG
Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFLIDSSGRNTREAFNVVAEEVIPIMNNRGG 254

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G        +     G      G + FLK  +    A N   KR   +C Y E WH D 
Sbjct: 255 IG--------ISLPCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDT 306

Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKE 517
            + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  + WTLF       L +L+G+E
Sbjct: 307 LKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRGEHLSNLFGEE 365

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQH 575
           FE  YE  ER+     + V   I    +  +++     TG P++ FKD  N       QH
Sbjct: 366 FEKEYERLERE----NVGV-ATIPITEIMFQIIKSAVSTGTPFVVFKDAFNRHYFYNMQH 420

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTI 625
             +   SNLCTEI   + S+   VCNL SINL A   N +          FDY+ L  T 
Sbjct: 421 RAL-KCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSFFDYELLRETA 479

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTA    + +I +     ++A+  NH  R++G+G+ G  +A  +      S E  E  D 
Sbjct: 480 RTATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDT 539

Query: 686 SMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTS 742
             E ++      S  L  E G   +  ++ S +  G   ID         ++E       
Sbjct: 540 VFELLALETTGISCRLC-ELGLPPFDKYRESYYALGWLHIDGWPNTKLRYKNE------- 591

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD L+ R+   G+ N   +A+ PTA+ + I  VS+   P + N++ K + +G+    
Sbjct: 592 ---WDSLRHRIDQSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSKISTTGEEVRP 648

Query: 803 NSFL---VNELKQRDLWDEAMISDLKYHDGSI----GNIERIPDDLKKIHATAFEIDPMW 855
           +  L   ++EL       +A +++LK H  S+    G+       L K   TAFE+D   
Sbjct: 649 HLALMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQ-TAFELDQEK 707

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKTT-YYLRSRSAT 909
           L+  ++RR  +ID +QS  LY+ E      S  ++  + + A+  GLKT  YY + R  T
Sbjct: 708 LLYLSARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTAMYYCKVRKIT 767

Query: 910 S 910
           +
Sbjct: 768 N 768


>gi|160903303|ref|YP_001568884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
 gi|160360947|gb|ABX32561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
          Length = 840

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 185/667 (27%), Positives = 301/667 (45%), Gaps = 103/667 (15%)

Query: 297 GLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKET------EKEKRAVE-FYNLLS 347
            + IL DRYFL    G+ +E        R+A  +A  E       E+ K A E FY L+ 
Sbjct: 16  AITILKDRYFLKDGEGNYLESTWDEVAKRIARHVAAAEVNYTNDIEEIKNAEEHFYQLIK 75

Query: 348 SFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPDDL 380
           S  F+ ++PT+FN+G                           T+H  LS+CF+  + D +
Sbjct: 76  SRIFLPNSPTIFNAGKTMDRQLFKKDIEETTLEDYKTIFDSRTKHNMLSACFVIPMDDSM 135

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF A++  A++ KY GG+G D++ +R  G+ I GT GKS G I F+ V N  A  + Q
Sbjct: 136 SAIFDAVKNAALIMKYGGGVGYDFSVLRPKGSSIAGTGGKSSGPISFMHVFNTAASTIEQ 195

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRK-NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG R+ A  A L   H DV +F++ +K N G++     +++     P  F K + ++   
Sbjct: 196 GGARRAAQMAVLRYDHPDVFDFINSKKDNKGNNVLNYFNISVNIDNPKEFKKMLEEDGDL 255

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P                               + + I A  L  KM+   ++TG P
Sbjct: 256 TLEHPAS----------------------------SIRKTIKANDLMNKMVENAWKTGDP 287

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------ 613
            + F    N          V ++N C E  L         CNLGSI++     +      
Sbjct: 288 GMLFLGRHNQYYAMSEHTPVTATNPCGEEPL----PPFGSCNLGSIDVAKLVEDMDLGNP 343

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N  D  +    +  AVR LD+VI+ N + +++ ++ +   R IGLG+MG   AL+   +P
Sbjct: 344 NSPDISEFQEIVYWAVRFLDDVIESNIYPLKEIEEISKKQRFIGLGMMGLADALYKKELP 403

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S +A +   +    +++ +  AS ELA+ERG +  F+ S +  G  P     L  E+ 
Sbjct: 404 YNSEQARKFMAKLTAELAYFSHVASTELAKERGNFPDFQRSKYPNGFIPFPM--LDDEID 461

Query: 734 DELAMNRTSRLPWDELKKR----VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           +++ +       W+E  ++      T   RN     IAPT +I+N+   S  I+P++   
Sbjct: 462 EDIKV-------WNEKIRQHFQGEATKYKRNVQTNTIAPTGSISNLADTSSGIEPNFLLS 514

Query: 790 YVK--SNMSGD---FTVVNSFLVNELKQRDLWDEAMISDLK---YHDGSIGNIERIPDDL 841
           YV+  +N  GD    + +N  L+ ++         M  +LK      GSI NI+ IP+++
Sbjct: 515 YVRYMTNKEGDRVPLSYINPILMEKIGTN------MTEELKAEIIEKGSIQNIDSIPNEI 568

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           KKI  T+ +I P   + +    Q ++D + S  + + + S  + +  IY QA  + LK  
Sbjct: 569 KKIFVTSMDIPPKDHLLAQHVIQSYLDASCSKTINMPKSSTIEDVKAIYLQALELNLKGL 628

Query: 901 YYLRSRS 907
              R  S
Sbjct: 629 TIYRDGS 635


>gi|253689502|ref|YP_003018692.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756080|gb|ACT14156.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 721

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 190/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%)

Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313
           RY +EEG  +A +L +    FD +       Y   F F+ +LG    Y  Y L   +G R
Sbjct: 71  RYLVEEGYYEAEVLDQ--YQFDFIKRLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 128

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371
            +E  +     VA+ LA  +T      V+    + S  F  +TPT  N G +   +L SC
Sbjct: 129 YLERYEDRVCLVALTLAKGDTALAGALVD---EIISGRFQPATPTFLNCGKKQRGELVSC 185

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+ 
Sbjct: 186 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 245

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 246 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 305

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP +V  ++ +   E  +  E Y    +   I+   +I A   ++ +  
Sbjct: 306 LAKNNQVMYLFSPYDVEQVYSVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 363

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599
           + FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   
Sbjct: 364 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKDIS 421

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+    A+  F       T+  A+R L  V D+ +  ++   +K N    AIGL
Sbjct: 422 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHIRSVPSIEKGNDESHAIGL 476

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y + EAV+  +     ++FHAI AS  LA ER   +S F+ S + 
Sbjct: 477 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFEHSKYA 536

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    I            E+ ++  ++  ++  W  L++ V   G+ N N  A+ PT
Sbjct: 537 TGEYFDKYIEQCWEPTTARARELFEQADIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 596

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P                     +V+ ++ R    E  I  + Y   
Sbjct: 597 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 632

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            + N     D+L+  +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 633 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 686

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 687 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 715


>gi|188025724|ref|ZP_02959589.2| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
 gi|188020254|gb|EDU58294.1| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
          Length = 723

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 183/672 (27%), Positives = 303/672 (45%), Gaps = 72/672 (10%)

Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLAL 330
           +D  ++    K  Y   F F+ +LG    Y  Y L   +G R +E  +     VA+ LA 
Sbjct: 89  YDFAFIKKLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA- 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQE 389
                +  A    + + S  F  +TPT  N G +   +L SCFL  + D++  I  ++  
Sbjct: 148 --QGNQALASYLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNS 205

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA  
Sbjct: 206 ALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKMLEDAFSYANQLGARQGAGA 265

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP ++  
Sbjct: 266 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENKEMYLFSPYDIER 325

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            + +   E  +  E Y    +   IK + KI+A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 326 EYGVPMSEISVT-EKYHEMVNNKAIKKY-KINAREFFQTLAEIQFESGYPYILFEDTANR 383

Query: 570 RSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFD 617
            +P    G ++ SNLC+EI  +N  S            +   CNLGS+N+         D
Sbjct: 384 ANPI--AGRINMSNLCSEILQVNRPSFYEDDLSYREVGKDISCNLGSMNIA-----KMMD 436

Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               A ++  A+R L  V D+ +  ++   ++ NH   AIGLG M     L    I Y S
Sbjct: 437 APDFAQSVAIAIRALTAVSDMSHIRSVPSIEQGNHQSHAIGLGQMNLHGYLARERIHYGS 496

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG-------- 727
            EA++  +     I++HA+  S +LA ER A +  F+ S +  G +    I         
Sbjct: 497 EEALDFTNIYFYTITYHALKTSNQLAIERKATFKGFEHSEYANGRYFDKYINQSWLPKTQ 556

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            + E+     +   ++  W  LK+ V   G+ N N  AI PT +I+ I   + SI P   
Sbjct: 557 TVQELFRRSGIEIPTQADWLSLKQSVMEHGIYNQNLQAIPPTGSISYINNSTSSIHP--- 613

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V  ++ R    E  I  + Y    + N     D+L+  +  
Sbjct: 614 ------------------IVARIEIRK---EGKIGRVYYPAPFMNN-----DNLE-YYQD 646

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R R
Sbjct: 647 AYQIGPEKIIDTYAVATQHVDQGLSLTLFFKDDATTRDINRAQIYAWRKGIKTLYYIRLR 706

Query: 907 SATSVEKSTLKG 918
             T++E + + G
Sbjct: 707 Q-TALEGTEIDG 717


>gi|157311535|ref|YP_001469578.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage Phi1]
 gi|149380739|gb|ABR24744.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           Phi1]
          Length = 747

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 209/802 (26%), Positives = 347/802 (43%), Gaps = 114/802 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205
           ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  +
Sbjct: 5   VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEE 262
           +  +  + P+Y  V +   +  LR+    +VY + Q            +++C   R I  
Sbjct: 64  ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPI----------DFYCHIERNIAT 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAF 320
           G   R + +     ++ YL   + ++ DF   Y G   L ++Y +    ++  IE PQ  
Sbjct: 110 GKYDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFA 169

Query: 321 FMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVP 377
           +M + M L  +ETE   +  ++FYN +++      TP +  +G R P  Q SSC +    
Sbjct: 170 YMLIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESD 227

Query: 378 DDLYGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           D L GI      NA++   S   G+G +   +R  G+ I     +  GVIPF K      
Sbjct: 228 DSLQGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAV 285

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +
Sbjct: 286 KSCSQGGIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLK 345

Query: 496 NAGWTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               TLFSPD     L DLY ++ E   + YE+      ++  R + A  L+  +    F
Sbjct: 346 RDYITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERF 404

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLL 608
            TG  + TF D  N      ++V  +  SNLC EI L +        E ++C       L
Sbjct: 405 NTGRIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------L 458

Query: 609 AHFANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           A +    FD + +    R A   VR LDN++D   + +E+A  +    R++G+G+  F S
Sbjct: 459 AAYVLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFAS 517

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L      Y   +A E   ++ E + +  I ASV LA+E+GA      + + +G  PID 
Sbjct: 518 YLADNFFTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPID- 574

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +  DEL ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P 
Sbjct: 575 --WYKKTVDEL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPP 631

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + VK +  G F  V                            I N+E   D      
Sbjct: 632 RGIVSVKGSKEGQFNQV----------------------------IPNVENNAD------ 657

Query: 846 ATAFEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------D 886
                ID +W LI+  ++         QK++DQA S N   D PS  K           D
Sbjct: 658 ----VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDD 712

Query: 887 FIYRQAWLMGLKTTYYLRSRSA 908
            ++ Q +  GLKT YY   R  
Sbjct: 713 MLFAQYY--GLKTLYYANVRDG 732


>gi|157955313|gb|ABW06028.1| NrdE [Bacillus thuringiensis serovar finitimus]
          Length = 694

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|295397899|ref|ZP_06807961.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294973879|gb|EFG49644.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 727

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 187/691 (27%), Positives = 307/691 (44%), Gaps = 96/691 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR-IE 315
           Y+EEG        ++ D + V       Y+  F F+ ++     Y +Y L  N G R +E
Sbjct: 71  YLEEGFL------NLYDREFVKRLMQETYDFKFRFKSFMSAYKFYTQYALKTNDGKRYLE 124

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT 374
             +   +  A+ LA      E+ A +  + + +  +  +TPT  N+G  R  +L SCFL 
Sbjct: 125 RYEDRIVFTALYLA---NGDEQVASDLRDEMINQRYQPATPTFLNAGRKRRGELVSCFLI 181

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              DD+  I   +     L++  GG+G + T +R  G  I      S G+IP +K+  D+
Sbjct: 182 QATDDMNSIGRTINSALQLSRLGGGVGVNLTNIRAAGDPIKKIENASSGIIPVMKLLEDS 241

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R GA   YL  +H DV  FL  +K   D++ R   ++    +PD F +   
Sbjct: 242 FSYSNQLGQRNGAGAVYLSVFHPDVVSFLSAKKENADEKIRVKTLSLGLVVPDKFYELAE 301

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALWRKML 550
           ++    LFSP    D+  +YGK +  AY    E Y+   +  EIK   KI A  L   + 
Sbjct: 302 KDEMMYLFSP---YDVERIYGKPY--AYVNITEEYDNLVNNPEIKK-SKIRARDLEDDIS 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE---------ITLNSSSEETAV-- 599
            +  E+G+P+I   D  N ++P    G +  SNLC+E         I  + + EE     
Sbjct: 356 KLQQESGYPYIINIDTVNDQNPID--GTIVMSNLCSEILQVQRPSIINNDQTFEELGTDI 413

Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657
            CNLGS N+     NN         ++ T VR L  V D +    +   KK N     IG
Sbjct: 414 SCNLGSTNI-----NNLMHSPDFGKSVDTMVRGLTYVTDASAIDVVPSIKKGNDLAHTIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716
           LG MG  +   L  + Y SPE++E  D+    ++++ + AS  +A+ERG  + +F+ S +
Sbjct: 469 LGAMGLHTYFALNEMHYGSPESIEFTDKYFLLLNYYTLVASNRIAKERGVTFENFENSTY 528

Query: 717 DQGVFPIDSIG--LLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770
             G +    I      E     A      +P    W  L+  V+  G+ + N +A+APT 
Sbjct: 529 ATGEYFDKYINEETTFEFERVAAQFEGIHIPTQEDWKALRAAVQEHGLYHQNRLAVAPTG 588

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ +   S S+ P  Q                  L+ E +++        +   Y+   
Sbjct: 589 SISYVNETSSSLHPIIQ------------------LIEERQEKK-------TGKTYYPAP 623

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882
             + + +P      + +A++ID   +I+  +  Q+ IDQ  SL L++  D P+G      
Sbjct: 624 FLSNKTLP-----YYQSAYDIDNRRIIDIYAAAQQHIDQGMSLTLFMRSDIPAGLYPWKE 678

Query: 883 --------KKLDFIYRQAWLMGLKTTYYLRS 905
                   + L+ + R AW  G+K+ YY+R+
Sbjct: 679 GRTSKMTTRDLNILRRYAWKRGIKSIYYVRT 709


>gi|228920163|ref|ZP_04083512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839619|gb|EEM84911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 682

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L   +I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNNIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|261323426|ref|ZP_05962623.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261299406|gb|EEY02903.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 713

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 188/676 (27%), Positives = 301/676 (44%), Gaps = 82/676 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 81  FNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD 140

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
            +  +  VE    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 141 EQLARDLVE---EIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 197

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 198 QLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 257

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++
Sbjct: 258 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVY 317

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  E Y    +  +I   +KI+A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 318 GVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVLAEIQFESGYPYIMFEDTVNRAN 375

Query: 572 PQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC EI   S +             +   CNLGS+N+ A       D  
Sbjct: 376 PID--GRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAA-----AMDAP 428

Query: 620 KLASTIRTAVRVLDNVID---INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               TI T++R L  V D   I C  +    + N    AIGLG M     L    I Y S
Sbjct: 429 DFGKTIETSIRALTAVSDMSHIGC--VPSVARGNAESHAIGLGQMNLHGYLARERIFYGS 486

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------------SLWDQGVFPI 723
            E V+  +     +++HA+ AS  +A E G   SFKG                DQ   P 
Sbjct: 487 EEGVDFTNIYFYTVAYHAMRASNRIAVETG--KSFKGFEKSKYASGEYFDKYTDQAWAP- 543

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +   +  + ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 -ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIH 602

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     +V++++ R    E  I  + Y    + N     D+L+ 
Sbjct: 603 P---------------------IVSKIEIRK---EGKIGRVYYPAAFMTN-----DNLE- 632

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY
Sbjct: 633 YYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 692

Query: 903 LRSRSATSVEKSTLKG 918
           +R R   ++E + ++G
Sbjct: 693 IRLRQ-MALEGTQVQG 707


>gi|18313863|ref|NP_560530.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
 gi|18161428|gb|AAL64712.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
          Length = 849

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 167/650 (25%), Positives = 299/650 (46%), Gaps = 72/650 (11%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P     RVA  +A +E E   RA  +Y+ ++    + ++P  FN+ TR    +SCF  
Sbjct: 159 ETPSMAAWRVATAVA-RELE---RAKLYYDYITQLKIVPASPFWFNAWTRKEMFASCFTL 214

Query: 375 TVPDDL--------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            V D L        Y I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + 
Sbjct: 215 EVEDCLSSITHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVS 274

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+++ +     + QGGKR+GA    L  WH D+ +F+  +     D     + N + ++ 
Sbjct: 275 FMRLFDANVDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDAH-LQNFNISVFVD 333

Query: 487 DLFMKR---VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           D FM++   V  ++ + L +P      +D  GK+  + + +  ++    +  V+ ++ A 
Sbjct: 334 DTFMEKALGVDGDSKYKLINP---RVFYDKTGKK-AVEFVDVHKETQVPKEAVWGEVDAR 389

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSS 593
            L+ ++    +++G P + FK   N  +P           +   +  S N C E   N  
Sbjct: 390 QLFGEIAHGAWDSGDPGLIFKSNLNASNPLLGEEIEISNYRFTYIWRSVNPCAETVQNPF 449

Query: 594 SEETAVCNLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHT 642
                VCNL  INL+     N             D++ LA   R   R LD+ I+ +   
Sbjct: 450 E----VCNLTHINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTG 505

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I+   + N   R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA
Sbjct: 506 IKIIDEMNSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELA 565

Query: 703 QERGAYSSFKGSLWDQGVFPI----DSIGLLAE----------------VRDELAMNRTS 742
           +ERG +  F+ S++ +G  P+    D +    E                +RD     R  
Sbjct: 566 RERGPFKFFEKSVYARGEIPVLKFQDFVWRRWERIKRVYPRELQEAGDRLRDITMRTREW 625

Query: 743 RLPW-DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             P+ + L  +V+  G+RNS  ++IAPT   + + G +  ++P +   ++++   G    
Sbjct: 626 LRPYLERLADKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLIE 684

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                +  LK R  W    +  +    G + +   +P+  K + ATA EI  +W +   +
Sbjct: 685 YYEPGIEWLKARGYWT-PQVRKVVEETGMLRDAP-VPEAAKHLLATAMEIGWLWHVLMQA 742

Query: 862 RRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             Q+W+DQ  ++++N+  + P  + + + +  AW +G+K     R +S +
Sbjct: 743 SAQQWVDQGISKTINMPANAPQ-EDVYWAFAFAWAVGVKGITVYRDKSKS 791


>gi|20090518|ref|NP_616593.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
 gi|19915544|gb|AAM05073.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
          Length = 558

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 278/595 (46%), Gaps = 96/595 (16%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  ++  E E     +EF +L+    F+ S+PTL N+GT   QL++CF+  V D +  
Sbjct: 37  RVARAISTDEDEY----LEFKDLMVRKIFVPSSPTLMNAGTELGQLAACFVVPVKDSVEE 92

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF AL+  A++ K  GG G +++ VR  G+H    +G + G I F+++ N+    + Q G
Sbjct: 93  IFDALKTAALIQKTGGGSGFNFSRVRPKGSHALCVDGVASGPISFMRLFNEATEVIKQFG 152

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L+  H D+  F+  +   G  R    + N +  + D F + V   +   ++
Sbjct: 153 RRRGANIGILDVSHDDIIPFIRAKHVEGSFR----NFNLSVMVRDAFFRLVEAGSTEEVW 208

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P   + + D++ +  E                         +WR         G P + 
Sbjct: 209 NPRTGATVGDVFSEIVE------------------------GIWR--------NGEPGVL 236

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +    +G + ++N C E  L         CNLGS+NL    A+ + ++D L 
Sbjct: 237 FYDRINRDNFTPGLGDITATNPCGEEPLLPYES----CNLGSLNLSLFVADGKINWDFLR 292

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T   AVR LDN IDIN + + +  ++    R IGLG+MGF   L  L + Y S EAVE+
Sbjct: 293 ETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIGLGVMGFHDMLLKLGLSYDSTEAVEL 352

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A++ ME I++ A+  S +LA E+G +  ++ S+W+                         
Sbjct: 353 AEKLMEQINWAAVRESRKLAAEKGPFPEYEKSIWE------------------------- 387

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTV 801
                        + MRN+   AIAPT TI+ + G S  I+P +  +Y ++   G +F +
Sbjct: 388 -------------LSMRNATLTAIAPTGTISILAGCSAGIEPVFSWVYRRTRTVGKEFLL 434

Query: 802 VNSFLVNELKQR-DLWDEAMISDLKYHDGSIGNI---ERIPDDLKKIHATAFEIDPMWL- 856
           V+       K R    D   + +  Y  G++ +I   E +P++ KK+  +A +I   W  
Sbjct: 435 VHPLFEAHFKPRLSESDYNELLEHVYAHGTLQDIDDPEIVPENEKKLFRSALDIG--WKT 492

Query: 857 ---IESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
              I++A +R      ++++N+ +D  +GK+ ++     AW  GLK     R+ S
Sbjct: 493 HIDIQAAFQRHCHAGISKTINMPVD--AGKEDIEQALIYAWKQGLKGITIYRTGS 545


>gi|270291188|ref|ZP_06197411.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
 gi|270280584|gb|EFA26419.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
          Length = 721

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 181/718 (25%), Positives = 318/718 (44%), Gaps = 88/718 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K+  +A   +   L   +     E+ ++A L+ +    FD +    D    +
Sbjct: 32  QEALAAFLKENVQANTKQFTSLRERFDYLLEEDYIEAELVEK--YSFDFIEKLYDYLRAQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N +   + + F  RVAM         E+ A++  + +  
Sbjct: 90  NFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADEIIH 148

Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G +H  +L SCFL    DD+  I   +     L+K  GG+G + T +
Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523
              D++ R   ++    +PD F + +  +    LFSP  V     +YGK +  AY    +
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVE---KVYGKPY--AYVDITK 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+   +  EIK + K+ A  +  ++  +  E+G+P++   D  N  +P    G +  SN
Sbjct: 324 EYDNLVNNPEIKKY-KVKARNIENEISKLQQESGYPYVVNVDTANRENPI--YGKIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        +++    T +     CNLGS N++   A   F       ++ T VR 
Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +   +  N     IGLG MG    L   H+ Y  P++VE        +
Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743
           ++  + AS ++A+ERG  + +F+ S +  G     +     G  +    EL   ++  + 
Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +LK+ V   G+ + N MA+APT +I+ I   + S+ P                   
Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +VN +++R    E  I  + Y    + N      D  K + +A++ID   +++  +  
Sbjct: 597 --IVNRVEER---QEKKIGKIYYPAPYLSN------DTLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++    P G              + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|259907589|ref|YP_002647945.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963211|emb|CAX54695.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|283477431|emb|CAY73347.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 716

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 177/644 (27%), Positives = 288/644 (44%), Gaps = 67/644 (10%)

Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           R F F+ +LG    Y  Y L   +G R    + F  RV M         +  A+   + +
Sbjct: 97  RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALTDEI 154

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 155 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 214

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 215 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDT 274

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ L   +  ++ +  
Sbjct: 275 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYALPFADISMSEKYP 334

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  AD    + F  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 335 EMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVP--GRINMSNLC 390

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS +E           +   CNLGS+N+ AH      D    A T+  AVR L 
Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNV-AH----AMDSADFARTVEIAVRGLT 445

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++
Sbjct: 446 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTY 505

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSR 743
           HA+  S +LA+ER   +S F  S +  G +    +G         +A +     +   S+
Sbjct: 506 HALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQ 565

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK+ V   G+ N N  AI PT +I+ I   + SI P                   
Sbjct: 566 QQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHP------------------- 606

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V+ ++ R       +    Y+     N     +D + ++  A++I P  +I++ +  
Sbjct: 607 --IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQALYRDAYDIGPEAIIDTYAEA 655

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 656 TRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 699


>gi|259046998|ref|ZP_05737399.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036317|gb|EEW37572.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 719

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 168/659 (25%), Positives = 295/659 (44%), Gaps = 82/659 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++     Y +Y +  N  +  + + F  R+           E+ A +    
Sbjct: 85  YKKKFRFRSFMSAFKFYKQYAMKTNDGQRYL-ERFEDRIVFNALFLADGDEQLAHDLAEE 143

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + +  +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G   
Sbjct: 144 MITQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSL 203

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + VR  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL 
Sbjct: 204 SNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLS 263

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--Y 522
            +K   D++ R   ++    +PD F + +  +    LFSP    D+  +YG  F      
Sbjct: 264 TKKENADEKVRVKTLSLGLVVPDKFYELIKNDDIMYLFSP---YDVERIYGVPFSYVDIT 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           + Y+   +  EI+   K+ A  L  ++  +  E+G+P++   D  N  +P    G +  S
Sbjct: 321 KEYDNMVNNPEIRK-SKLRARDLENEISKLQQESGYPYVVNIDTANRVNPID--GKIIMS 377

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI        +N++ E   +     CNLGS N++    +  FD      ++  AVR
Sbjct: 378 NLCSEILQVQEPSVINNAQEYEHLGTDISCNLGSTNIVNLMKSPDFD-----RSVDVAVR 432

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N     IGLG MG  +   L  + Y SPE++E  D     
Sbjct: 433 ALTFVTDHSSIDAVPTVKNGNSKAHTIGLGAMGLHTFFALNQMEYGSPESIEATDLYFRM 492

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--- 745
           ++F+ + AS ++A+ERG ++  F+ S +  G +    I    +++ +      ++LP   
Sbjct: 493 LNFYTLKASNKIAKERGKSFEGFERSKYATGEYFDSYIAEEVQIQSDKVKKIFAKLPIPT 552

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +LK+ V + G+ + N +AIAPT +I+ +   S S+ P  +               
Sbjct: 553 VEDWKQLKEEVMSGGLYHQNRLAIAPTGSISYVNETSASLHPITR--------------- 597

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L+ E +++        +   Y+     + + +P      + +A++ID   +I+  + 
Sbjct: 598 ---LIEERQEKK-------TGKTYYPAPFLSNDTLP-----FYKSAYDIDMRKVIDVYAA 642

Query: 863 RQKWIDQAQSLNLYL--DEPSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
            QK IDQ  SL L++  + P G              + L+ +   AW  G+K+ YY+R+
Sbjct: 643 AQKHIDQGMSLTLFMRSELPEGLYEWKEGRTNKMTTRDLNILRNYAWNKGIKSIYYVRT 701


>gi|157955371|gb|ABW06072.1| NrdE [Bacillus thuringiensis serovar indiana]
          Length = 694

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|75759354|ref|ZP_00739451.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74493186|gb|EAO56305.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955363|gb|ABW06066.1| NrdE [Bacillus thuringiensis serovar dendrolimus]
 gi|157955375|gb|ABW06075.1| NrdE [Bacillus thuringiensis serovar morrisoni]
          Length = 694

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|157955383|gb|ABW06081.1| NrdE [Bacillus thuringiensis serovar sotto]
          Length = 694

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 172/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++I+   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|118617479|ref|YP_905811.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           ulcerans Agy99]
 gi|118569589|gb|ABL04340.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium ulcerans Agy99]
          Length = 693

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 289/653 (44%), Gaps = 75/653 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +    ++ V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDATLAEKLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G
Sbjct: 303 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIE--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----RTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L   HI Y S E V+  +
Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEGVDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F  S +  G F       + E + E    L  +
Sbjct: 475 IYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 535 AGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEG 594

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ NE             +L Y+                    A+EI   
Sbjct: 595 KIGRVYYPAPYMTNE-------------NLDYYQ------------------DAYEIGYE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 624 KIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLR 676


>gi|57014144|gb|AAT68709.2| ribonucleoside reductase alpha subunit [Borrelia hermsii]
          Length = 690

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 186/727 (25%), Positives = 336/727 (46%), Gaps = 97/727 (13%)

Query: 224 LLEKLRREVLTTVYKKPQKATHHEM-QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            LE+++ + L   +  P +  H+ +   LY +++  Y E    A++L      + LV L 
Sbjct: 30  FLEEVKAKSLR--FSNPNERMHYLIDNNLYEDFYKNYSE----AQILE----IYKLVELE 79

Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           N       F F+ Y+     Y  Y L +NG + +E  +   + V++ LA    E    A+
Sbjct: 80  N-------FKFKSYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---FAL 129

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + +    +  +TPT  N+G R   +L SCFL  V D L  I   +     L+K  GG
Sbjct: 130 KLASEMIKQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGG 189

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+
Sbjct: 190 VALNLSNIRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDI 249

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+FLD +K   D++ R   ++    IPD F +   Q   +  F+P  +      +  E +
Sbjct: 250 EDFLDTKKINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEID 309

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E Y+  A    I + ++I A  +  ++  + FE+G+P+I ++  CN+ +P + +G +
Sbjct: 310 FDLE-YDLLASNPNI-LKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKI 367

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI        +    E   +     C LGS+N++ +  N+ F+Y     T+  
Sbjct: 368 KMSNLCTEIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIV-NVVNSNFEY-----TVDI 421

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A++ L +V D  +        K+N+ + A+GLG+M     L    IPY S EA++     
Sbjct: 422 AMQALTSVCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTF 481

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSI--GLLAEVR 733
              ++F++I +S+ +A+ RG  +  FK S +  G +          P   +  G+ + ++
Sbjct: 482 FMLLNFYSIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIK 541

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             L      +  W+ LK+ V+  G+ ++  +A+APT +I+ I   + S+ P         
Sbjct: 542 IPL------KSDWENLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMP--------- 586

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                       +V  ++ R   +      + Y          +  +      +A+ +D 
Sbjct: 587 ------------IVEPVEARVYGNSTTYYPMPY----------LSKENALFFKSAYYMDM 624

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             LI+  S  Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++  SV+
Sbjct: 625 RKLIDLISEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVD 683

Query: 913 KSTLKGV 919
           +  L  +
Sbjct: 684 ECILCAI 690


>gi|229189533|ref|ZP_04316549.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
 gi|228593978|gb|EEK51781.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
          Length = 682

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|169630494|ref|YP_001704143.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           abscessus ATCC 19977]
 gi|169242461|emb|CAM63489.1| Ribonucleoside-diphosphate reductase alpha subunit [Mycobacterium
           abscessus]
          Length = 712

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 183/663 (27%), Positives = 295/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  + +  ++ V
Sbjct: 88  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDLQLAEKLV 147

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 148 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 204

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 205 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 264

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V   + +   +  
Sbjct: 265 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERTYGVPFADIN 324

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D G+I+   KI A   ++ +  + FE+G+P+I ++D  N  +P +  G +
Sbjct: 325 VT-EKYYEMVDNGQIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPIE--GKI 380

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 381 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 435

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +  
Sbjct: 436 AIRALTAVSDQTHIWSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIY 495

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG  +  F  S +  G F       + E + E    L  +  
Sbjct: 496 FYTVLYHALRASNRIAIERGTKFGGFDRSKYASGEFFDKYTDQVWEPKTEKVRQLFADAG 555

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
            R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 556 IRIPTQDDWLRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKI 615

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       +L N+                       N+E   D        A+EI    +
Sbjct: 616 GRAYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 644

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  S + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 645 IDTYAAATQHVDQGLSLTLFFKDTASTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 703

Query: 916 LKG 918
           ++G
Sbjct: 704 VEG 706


>gi|218896384|ref|YP_002444795.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228900032|ref|ZP_04064268.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228964414|ref|ZP_04125528.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218545317|gb|ACK97711.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228795271|gb|EEM42763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228859646|gb|EEN04070.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 682

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|108798058|ref|YP_638255.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119867154|ref|YP_937106.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126433719|ref|YP_001069410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
 gi|108768477|gb|ABG07199.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119693243|gb|ABL90316.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126233519|gb|ABN96919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/672 (25%), Positives = 276/672 (41%), Gaps = 100/672 (14%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA----------------FEYLGLQILYD 303
           I++ V+ARL    + D    Y+     Y RD A                     + +L +
Sbjct: 65  IQDFVEARLGEAGLDDVARAYIV----YRRDRADLRAAKALLGVRDELKLSLAAVTVLRE 120

Query: 304 RYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV-----EFYNLLSSFHFMCSTPT 357
           RY L    G  +E       R A  +A  E   E  +       F   L    F+ ++PT
Sbjct: 121 RYLLRDQRGRPVESTGEMMDRAARCVAAAEDAYEPGSSAEWTDRFSRGLRDLEFLPNSPT 180

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+GT    LS CF+  V D L  IF  L + A + +  GG G  ++ +R  G  I  T
Sbjct: 181 LMNAGTDLGLLSGCFVLPVEDSLRSIFATLAKAAEIQRAGGGTGFSFSRIRPDGDPITTT 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G +PF+ + +  A  V+ GG+R+GA  A L+  H D+ +F+     +G   +  H
Sbjct: 241 TGSACGPVPFVGLFDAAAQVVSLGGRRRGACMAVLDVSHPDIYDFIA--SKSGSTAKLPH 298

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D FM+ V            E   +H L                     K  
Sbjct: 299 -FNLSIGVGDAFMRAV------------ESGGMHRLVNPRTG---------------KTA 330

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L       
Sbjct: 331 ARVRADELFAAICEAANHGGDPGLVFLDTINRANPVPQRGRIEATNPCGEVPLLPYES-- 388

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGS+NL      ++ D+ +L +    AVR  D+VID++ +   +  ++    R IG
Sbjct: 389 --CNLGSVNLTRMLTGDEVDWTRLTAVTEMAVRFFDDVIDVSRYPFAELGEATRATRKIG 446

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S EA+ + D  M  I   A  AS  LA++RG++ +F  S   
Sbjct: 447 LGVMGLAEMLARLGIPYDSEEALRLTDRVMRHIQRAAHRASRRLAEDRGSFPAFPDS--- 503

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                            + V++   RN+   ++APT TI+ I G
Sbjct: 504 ---------------------------------RLVRSGPRRNAQVTSVAPTGTISLIAG 530

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P +   Y ++ +      VN       + R  + + +I+++    G +     +
Sbjct: 531 TTAGIEPMFAIAYTRAILGRHLLEVNPTFDRLARDRGFYRDELITEIAER-GGVRRCPSL 589

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
           P +++    TA EI P W +   +  Q+ +D A S  + L    +   +  IY +AW   
Sbjct: 590 PAEVRSAFPTATEISPDWHLRMQAVVQRHVDAAVSKTVNLPSTATPADVRDIYLKAWKAK 649

Query: 897 LK--TTYYLRSR 906
           +K  T Y   SR
Sbjct: 650 VKGVTVYRYGSR 661



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 14/105 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTEQTVTRLLQHNK 88
           +V +R+G +  FD  +I  A+++A         +R +   D  +     +TV   L    
Sbjct: 9   RVRRRDGTLVPFDAGRIEAAVLRA---------AREVACDDPDMPGAVARTVADTLGPGT 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +     +E IQD VE  L ++G   + R Y++YR +R+D+RAA++
Sbjct: 60  A----DVETIQDFVEARLGEAGLDDVARAYIVYRRDRADLRAAKA 100


>gi|269850295|gb|AAP25314.2| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Ames]
          Length = 694

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 306/649 (47%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESEEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|157955309|gb|ABW06025.1| NrdE [Bacillus thuringiensis serovar canadensis]
          Length = 694

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|13358415|ref|NP_078756.1| Ribonucleotide reductase large subunit [Lymphocystis disease virus
           1]
          Length = 547

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 165/569 (28%), Positives = 248/569 (43%), Gaps = 90/569 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ S+P L +S    P   +CF+  V +++  I     E   L+   GG    W      
Sbjct: 53  FIYSSPILSDSDDGLP--IACFVMDVQNNIKDIIQHSVETKWLSINGGGCAGYW------ 104

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              +   +  S G IPFL   +   +A  QG  RKG+  AYL+  H D+ EF+++R  TG
Sbjct: 105 -GQLKSPSDTSCGPIPFLHTIDADVLAYKQGSTRKGSYAAYLDISHPDILEFINMRTPTG 163

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D  R+  +++    + D FM  V QN  W L  P                          
Sbjct: 164 DLNRKNLNLHHGVNLTDAFMIAVEQNLNWNLIEPHT------------------------ 199

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV------VHSSNL 584
             +IK    + AV LWR +L   F TG P++ F D  N      H G+      + SSNL
Sbjct: 200 -NQIK--ETVPAVQLWRLLLETRFRTGEPYLNFIDTAN---RALHPGLKAKNLKIKSSNL 253

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI L S  + TAVC L S+NL  +      D D +   I+    VLD  I      + 
Sbjct: 254 CNEIHLASDEQRTAVCCLASLNLEKY--EEWCDTDLVECCIKMLNNVLDYFIFKAPIELS 311

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           KA  S    R+IGLG  G+   L    IP+ SP+A+ +       I   A+  +  LAQ 
Sbjct: 312 KAVYSATCERSIGLGATGWAYYLMKNDIPFDSPKALFLTKLIFGNIKIKAVKTTCLLAQR 371

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G                                      P  +LK       +RN++ +
Sbjct: 372 FG--------------------------------------PAPDLK----AYNVRNAHLL 389

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP +  + I   S SI+P   N YV    +G   ++N +L  +L+  +   E   + +
Sbjct: 390 AIAPNSNTSCILNTSPSIEPIAGNAYVHKTRAGTHLIINPYLKQKLRNYNQDTEETWNSI 449

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              DGS+ ++  +  + K +  TA+EI+ + L+E A+ RQK+I Q QSLNL+    + +K
Sbjct: 450 ILKDGSVQHLTFLSHEEKAVFKTAYEINALVLVEQAAVRQKYICQGQSLNLFFPLNTQRK 509

Query: 885 -LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            L  ++  AW +G K  YYLR+ ++ S E
Sbjct: 510 LLHTVHFNAWKLGCKGLYYLRTSASKSSE 538


>gi|220912865|ref|YP_002488174.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           chlorophenolicus A6]
 gi|219859743|gb|ACL40085.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 712

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 186/660 (28%), Positives = 294/660 (44%), Gaps = 74/660 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+ LA      E+ A++  
Sbjct: 93  YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEQLALQMV 149

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N+G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 150 DEIIDGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 209

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 210 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 269

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   ++    LFSP    D+  +YG  F    
Sbjct: 270 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKDDDMYLFSP---YDVEKVYGMPFSDVS 326

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   IK   KI A   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 327 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKII 383

Query: 581 SSNLCTEITLNS---------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI   S         S ++T     CNLGS+N+         D      TI TA
Sbjct: 384 MSNLCSEILQVSQPTTYHDDLSYDDTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 438

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ N  ++    K N    AIGLG M     L    + Y S E ++  +   
Sbjct: 439 IRSLSAVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 498

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740
             + FHA+ AS  LA E G  +  F+ S +  G F       + +    +VR+    ++ 
Sbjct: 499 YSVVFHAVRASNLLAIETGQTFGGFEKSKYASGEFFDKYTEQEWVPQTEKVRELFKDVHI 558

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 559 PTQADWLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 618

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L N+                       N+E   D        A+EI    +I++
Sbjct: 619 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 647

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 648 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 706


>gi|30019504|ref|NP_831135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 14579]
 gi|29895048|gb|AAP08336.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus cereus
           ATCC 14579]
 gi|157955304|gb|ABW06021.1| NrdE [Bacillus thuringiensis serovar aizawai]
 gi|157955327|gb|ABW06039.1| NrdE [Bacillus thuringiensis serovar entomocidus]
 gi|157955331|gb|ABW06042.1| NrdE [Bacillus thuringiensis serovar galleriae]
 gi|157955335|gb|ABW06045.1| NrdE [Bacillus thuringiensis serovar kurstaki]
 gi|157955343|gb|ABW06051.1| NrdE [Bacillus thuringiensis serovar tolworthi]
 gi|157955351|gb|ABW06057.1| NrdE [Bacillus thuringiensis serovar colmeri]
 gi|157955379|gb|ABW06078.1| NrdE [Bacillus thuringiensis serovar ostriniae]
 gi|157955395|gb|ABW06090.1| NrdE [Bacillus thuringiensis serovar tohokuensis]
 gi|157955404|gb|ABW06097.1| NrdE [Bacillus thuringiensis serovar wuhanensis]
          Length = 694

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|13242411|ref|NP_077434.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 9]
 gi|11036563|gb|AAG27192.1|AF275348_12 ribonucleotide reductase, large subunit [Cercopithecine herpesvirus
           9]
          Length = 783

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 172/668 (25%), Positives = 306/668 (45%), Gaps = 79/668 (11%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------------ 340
           LGLQ  + Y+ ++L  +  ++IE  + FF+R+A  + ++  +    A             
Sbjct: 126 LGLQSALKYEEFYLTKLEDNKIESLEQFFIRLATAVTIEVMKIPNIAYLIPGTYSAYTWT 185

Query: 341 ----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENA 391
                F+N+LS    + +TP +   G      +SC++     T V D +  I G +    
Sbjct: 186 DMCSVFFNMLSRQLIIPATPVMMFLGRETGATASCYIMDPKSTNVRDAIRAITGDV---G 242

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            + +  GG+G     +  +  H      +++G +  LK+ +   +A+N   +R   VC Y
Sbjct: 243 TVLQSRGGVGISLQSLNIVPNHT-----ETKGALAILKLLDSMVMAINSDSERPTGVCVY 297

Query: 452 LETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSP 504
           +E WH+D+   L  R     D+  R  ++    W+PDLF+KR       TQN  WTLF  
Sbjct: 298 VEPWHVDIRSILCTRGMLVRDEAYRCDNIFYCMWMPDLFLKRYIQYVQGTQNVTWTLFD- 356

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +  + L +LYG +F   Y   ERQ         ++++ + +    +T     G P++ FK
Sbjct: 357 NRANVLCNLYGDDFTAEYLKLERQGIGVTTIPIQELAFLIVKSSAVT-----GSPFVMFK 411

Query: 565 DPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QF 616
           D CN R+   +V    +  SNLCTE+   ++     VCNL +IN+     N       +F
Sbjct: 412 DACN-RNYHMNVQGDAITGSNLCTEVIQKANPNMHGVCNLANINIANCILNGDEDGPPEF 470

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            +  L   +RTAV  L+ V+       +K+ +    +R++G+G+ G  +A   L +    
Sbjct: 471 SFADLTFAVRTAVVFLNGVLAAGNFPCKKSCEGVANNRSLGIGIQGLHTAFLRLGLDLTC 530

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           P A  +  E  E + + A+  S+ + ++ G   +  F+ S +  G    D     + +  
Sbjct: 531 PRARRLNVEITESMLYEAMFVSMNMCKQCGLQPFHEFENSKYASGWLHFDGFPTCSYLN- 589

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                    LPW+EL+  +   G+ NS  +A  PT   A +   S+   P + N++ K  
Sbjct: 590 ---------LPWEELRDDICQYGLYNSQFLAFMPTVASAQVTECSEGFSPVFTNMFSKVT 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAF 849
           +SG+    N  L++EL++    +E     ++  + +  ++ R    L   H      TAF
Sbjct: 641 ISGETLRPNLELMDELRKLYPHEEDRSRIIQQLEKNQWSVLRTFGCLNARHPLYKFKTAF 700

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK-----LDFIYRQAWLMGLKT-TYY 902
           E     L++    R  +IDQ+QS++L+++E P+G       ++ + R A+  GLKT  YY
Sbjct: 701 EYSQADLVDMCVDRAPFIDQSQSMSLFIEERPNGAVSAATIMNLLVR-AYKGGLKTGMYY 759

Query: 903 LRSRSATS 910
            + R AT+
Sbjct: 760 CKIRKATN 767


>gi|322831490|ref|YP_004211517.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321166691|gb|ADW72390.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 720

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 187/663 (28%), Positives = 301/663 (45%), Gaps = 74/663 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  + +    A  F 
Sbjct: 95  YAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGDIQ---LAGHFV 151

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 152 DEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAF 211

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 212 MLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRF 271

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +    N    LFSP  V  ++ +   E  I+ 
Sbjct: 272 LDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYHVEKVYGVPMSEISIS- 330

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    +   I    KI+A   ++ +  + FE+G+P++ F+D  N  +P +  G ++ S
Sbjct: 331 EKYREMVNDKRIHK-SKINAREFFQVLAEIQFESGYPYMMFEDTVNRANPIK--GRINMS 387

Query: 583 NLCTEI-TLNS--------SSEETA---VCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI  +NS        S +E      CNLGS+N+ +       D     +T+  AVR
Sbjct: 388 NLCSEILQVNSPTIYGEDLSYQEIGKDISCNLGSLNIAS-----AMDSPDFGNTVEMAVR 442

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D++   ++    + N    AIGLG M     L    I Y S E ++  +     
Sbjct: 443 ALTAVSDMSHIRSVPSIDQGNQDSHAIGLGQMNLHGYLCRERIYYGSEEGLDFTNIYFCT 502

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--GLLA------EVRDELAMNR 740
           ++FHAI AS ++A ER  ++  F  S +  G +    +   L A      E   EL  + 
Sbjct: 503 VAFHAIRASNQIAIERQQSFKGFSDSTYASGAYFDKYVDDALAAKWQPKTERVRELFADA 562

Query: 741 TSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
              +P    W  LK  V   G+ N N  A+ PT +I+ I   + SI P            
Sbjct: 563 GIAIPTTADWAALKASVMQHGLYNQNLQAVPPTGSISYINNSTSSIHP------------ 610

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                    +V+ ++ R    E  I  + Y    + N     D+L   +  A+EI P  +
Sbjct: 611 ---------IVSRVEIRK---EGKIGRVYYPAAFMTN-----DNLD-YYQDAYEIGPEKI 652

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 653 IDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWRKGIKTIYYIRLRQ-MALEGTE 711

Query: 916 LKG 918
           ++G
Sbjct: 712 VQG 714


>gi|315445212|ref|YP_004078091.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
 gi|315263515|gb|ADU00257.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
          Length = 722

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 182/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  ++G    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 98  DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTVLAEKLV 157

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 158 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 214

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 215 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 274

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 275 FRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 334

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I ++D  N  +P    G +
Sbjct: 335 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--GKI 390

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 391 THSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEV 445

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  +  ++   ++ N++  AIGLG M     L    I Y S E V+  +  
Sbjct: 446 SIRALTAVSDQTHIWSVPSIEQGNNSSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIY 505

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG A+  F+ S +  G F       + E + E    L  +  
Sbjct: 506 FYCVLYHALRASNRIAIERGTAFGGFEKSKYKSGEFFDKYTDQVWEPKTEKVRGLFADAG 565

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
            R+P    W +LK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 566 IRIPDQEDWKQLKASVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 625

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       ++ NE                       N+E   D        A+EI    +
Sbjct: 626 GRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYEKV 654

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 655 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 713

Query: 916 LKG 918
           ++G
Sbjct: 714 VEG 716


>gi|206967719|ref|ZP_03228675.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228907083|ref|ZP_04070947.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|228951832|ref|ZP_04113930.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229043193|ref|ZP_04190916.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|229069002|ref|ZP_04202295.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|229078636|ref|ZP_04211193.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|229126768|ref|ZP_04255780.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|229144055|ref|ZP_04272471.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|229149652|ref|ZP_04277883.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|229177858|ref|ZP_04305231.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|296502032|ref|YP_003663732.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
 gi|206736639|gb|EDZ53786.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228605649|gb|EEK63097.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|228633862|gb|EEK90460.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|228639452|gb|EEK95866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|228656708|gb|EEL12534.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|228704706|gb|EEL57135.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|228714114|gb|EEL65996.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|228726155|gb|EEL77389.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|228807755|gb|EEM54276.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228852587|gb|EEM97377.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|296323084|gb|ADH06012.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
          Length = 682

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|296140661|ref|YP_003647904.1| ribonucleoside-diphosphate reductase, subunit alpha [Tsukamurella
           paurometabola DSM 20162]
 gi|296028795|gb|ADG79565.1| ribonucleoside-diphosphate reductase, alpha subunit [Tsukamurella
           paurometabola DSM 20162]
          Length = 727

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 191/672 (28%), Positives = 295/672 (43%), Gaps = 90/672 (13%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R    + F  RV M  L L + + EK A 
Sbjct: 103 DAAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALTLADGD-EKLAT 159

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 160 SLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 219

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 220 VALLLSNIREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 279

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YG  F 
Sbjct: 280 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNDDMYLFSP---YDVERVYGVPFA 336

Query: 520 IA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                E Y    D   I+   KI+A   ++ +  + FE+G+P+I ++D  N  +P    G
Sbjct: 337 DVNVTEKYHEMVDDSRIRK-TKINAREFFQTLAELQFESGYPYIMYEDTVNRANPI--AG 393

Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI       T N       +     CNLGS+N+         D     +TI
Sbjct: 394 KITHSNLCSEILQVSTPSTYNDDLSYAEIGKDISCNLGSLNIA-----KTMDSPDFGATI 448

Query: 626 RTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D    T +   +  N+   AIGLG M     L    + Y S E V+  +
Sbjct: 449 ETAIRGLTAVSDQTAITSVPSIEHGNNLSHAIGLGQMNLHGYLARERVFYGSEEGVDFTN 508

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF---PIDS---------IGLLAE 731
                + FHAI AS  +A+ERG ++  F+ S +  G F    ID          IGL A+
Sbjct: 509 IYFYTVLFHAIRASNAIARERGQSFGGFEDSKYASGEFFDKYIDQEWKPATDKVIGLFAD 568

Query: 732 VRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                      R+P    W  LK  V+  G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 569 SE--------IRIPTQDDWRALKADVQQYGLYNQNLQAVPPTGSISYINHSTSSIHPVAA 620

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + ++                         E  I  + Y    + N     D+L+  +  
Sbjct: 621 KIEIRK------------------------EGKIGRVYYPAPYMDN-----DNLE-YYQD 650

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 651 AYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLR 710

Query: 907 SATSVEKSTLKG 918
              ++E + ++G
Sbjct: 711 Q-MALEGTEVEG 721


>gi|269957221|ref|YP_003327010.1| ribonucleoside-diphosphate reductase subunit alpha [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305902|gb|ACZ31452.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 718

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 180/650 (27%), Positives = 293/650 (45%), Gaps = 71/650 (10%)

Query: 285 LKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVE 341
           L Y +DF F+ +LG    Y  Y L   +G + +E  +     VA+GLA  + +  +  VE
Sbjct: 95  LAYSKDFRFDTFLGAFKYYTSYTLKTFDGKKYLERFEDRVSMVALGLADGDEQLARDIVE 154

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               + +  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+
Sbjct: 155 ---EVVAGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGV 211

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 212 ALLLSNIREHGAPIKHIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIM 271

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    IPD+  +   QN    LFSP +V  ++ +   +  I
Sbjct: 272 RFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKQNKDMHLFSPYDVERVYGVPFADVSI 331

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           + E Y+       I+    ISA   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 332 S-EKYDELVADDRIRK-TTISARDFFQTLAELQFESGYPYIMFEDTVNKANPIK--GRIT 387

Query: 581 SSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI    T ++ +E+ +         CNLGS+N+         D      TI TA
Sbjct: 388 HSNLCSEILQVSTPSTFNEDLSYDHVGRDISCNLGSLNIA-----KAMDSPDFGHTIDTA 442

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   K +N    AIGLG M     L    + Y S E V+  +   
Sbjct: 443 IRALTAVSDQTSIESVPSVKHANELGHAIGLGQMNLHGYLARERVFYGSEEGVDFTNIYF 502

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAM 738
             +++HAI+AS  LA ERG A+  F+ S +  G +           +   +A++  +  +
Sbjct: 503 YTVAYHAIAASNRLAIERGRAFGGFEDSKYATGEYFDKYTEQEWTPATARVAQLFADAGV 562

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSG 797
              ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G
Sbjct: 563 AIPTQDDWRALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVPAKIEIRKEGKLG 622

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ N+                       N+E   D        A+EI    +I
Sbjct: 623 RVYYPAPFMTND-----------------------NLEYYQD--------AYEIGYEKII 651

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 652 DTYAAATQHVDQGLSLTLFFKDTVTTRDVNRAQIYAWRKGIKTLYYIRLR 701


>gi|211638142|emb|CAR66768.1| ribonucleoside-diphosphate reductase 1 subunit alpha (ec 1.17.4.1
           (ribonucleoside-diphosphate reductase 1 r1 subunit)
           (ribonucleotid reductase 1) (b1 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
          Length = 626

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 180/644 (27%), Positives = 280/644 (43%), Gaps = 73/644 (11%)

Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFY 343
           RD  F Y  ++ L  +Y +   + G   E  Q  ++ VA  L      KE R      FY
Sbjct: 2   RDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL-FSSYPKETRLDYIRRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           + +S+F     TP +  +G R P  Q SSC L    D L  I               G+G
Sbjct: 61  DAVSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATSSAIVKYVSQRAGIG 118

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +   +R +G+ I        G IPF K       + +QGG R GA   +   WH++VE 
Sbjct: 119 INAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLEVES 178

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEF 518
            L L+ N G +  R   M+    +  L  +R+ +    TLFSP +V  L+D +     EF
Sbjct: 179 LLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEDITLFSPSDVPGLYDAFFTNQDEF 238

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVG 577
           E  Y  YE+ ++  +    +++ AV L+  M+     TG  +I   D CN  SP    V 
Sbjct: 239 ERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPSVA 294

Query: 578 VVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
            V  SNLC EI L        N  + E A+C L + NL A       + D+L      AV
Sbjct: 295 PVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFNLGA-----IENLDELEELAILAV 349

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LD ++D   + I  AK+     R +G+G++ +   L      Y+   A  +  ++ E 
Sbjct: 350 RALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHGARYSDGSANNLTHKTFEA 409

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I ++ + AS ELA+E+GA   FK + + QG+ PID+     +  D L  N      W+ L
Sbjct: 410 IQYYLLKASNELAKEQGACPWFKETTYSQGILPIDT---YKKTLDTLT-NEPLHYDWETL 465

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  +K  G+RNS   ++ P+ T + I   +  I+P    + +K++  G    V    V E
Sbjct: 466 RSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISIKASKDGILRQV----VPE 521

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
             +R   D  ++  +  +DG                           ++     QK+IDQ
Sbjct: 522 Y-ERLKGDYELLWQMPGNDG--------------------------YLQLVGIMQKFIDQ 554

Query: 870 AQSLNLYLDE---PSGK-KLDFIYRQ---AWLMGLKTTYYLRSR 906
           + S N   D    PSGK  ++ + +    A+  G+KT YY  +R
Sbjct: 555 SISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHNTR 598


>gi|157955317|gb|ABW06031.1| NrdE [Bacillus thuringiensis serovar pakistani]
          Length = 694

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|262203178|ref|YP_003274386.1| ribonucleoside-diphosphate reductase subunit alpha [Gordonia
           bronchialis DSM 43247]
 gi|262086525|gb|ACY22493.1| ribonucleoside-diphosphate reductase, alpha subunit [Gordonia
           bronchialis DSM 43247]
          Length = 731

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 192/694 (27%), Positives = 305/694 (43%), Gaps = 87/694 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310
           PE   RY  E VK+   H                Y + F F  +LG    Y  Y L   +
Sbjct: 91  PEVLARYDREFVKSLFGH---------------AYAKKFRFPTFLGAFKYYTSYTLKTFD 135

Query: 311 GSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQL 368
           G R +E  +     VA+ LA  +T   +  V+    +    F  +TPT  NSG +   + 
Sbjct: 136 GKRYLERFEDRVCMVALTLADGDTALARNLVD---EIIDGRFQPATPTFLNSGKKQRGEP 192

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 193 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIM 252

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 253 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 312

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +    N    LFSP +V  ++ +   +  +  + +E   D+   K   KI A   ++ 
Sbjct: 313 TFQLAKANDDMYLFSPYDVERVYGVPFADINVTDKYHEMVEDKRIRKT--KIKAREFFQT 370

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI       T N     + V  
Sbjct: 371 LAELQFESGYPYIMFEDTVNRANPID--GKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 428

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRA 655
              CNLGS+N+         D   L  TI TA+R L  V D    T +   +K N+   A
Sbjct: 429 DISCNLGSLNIA-----KAMDSPDLGQTIETAIRGLTAVSDQTAITSVPSIEKGNNDSHA 483

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS ++A+ERG +++ F+ S
Sbjct: 484 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNKIARERGHSFAGFEKS 543

Query: 715 LWDQGVFPIDSIGLLAE-----VRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E     VRD   +  ++  ++  W ELK  V   G+ N N  A+
Sbjct: 544 KYASGEFFDKYTEKVWEPETQKVRDLFGQAGIHIPTQDDWRELKAAVARDGIYNQNLQAV 603

Query: 767 APTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + + K    G       F+ N+                
Sbjct: 604 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPFMDND---------------- 647

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                  N+E   D        A+EI    +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 648 -------NLEYYQD--------AYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 693 VNRAQIYAWRKGIKTLYYIRLRQ-MALEGTEVEG 725


>gi|238755710|ref|ZP_04617044.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238706077|gb|EEP98460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 705

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 181/666 (27%), Positives = 293/666 (43%), Gaps = 83/666 (12%)

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 72  DFSFIKSLFQQAYAKKFRFPTFLGAFKYYTSYTLKTFDGQRYLERYEDRICMVALTLAAG 131

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +       VE    + S  F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 132 DQTLAHHLVE---EMISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAVNSA 188

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 189 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 248

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP ++  +
Sbjct: 249 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDIELV 308

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  ++ E Y        I+   KI A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 309 YGVPMSEISVS-EKYREMVGNKRIRK-SKIRAREFFQLLAEIQFESGYPYLMFEDTVNKA 366

Query: 571 SPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDY 618
           +P +  G ++ SNLC+EI  +N  +E           +   CNLGS+N+         D 
Sbjct: 367 NPIK--GRINMSNLCSEILQVNQPTEYHEDLSYKHIGKDISCNLGSLNIA-----RTMDS 419

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A TI TA+R L  V D+ +  ++    K N    AIGLG M     L    I Y S 
Sbjct: 420 PNFAQTIETAIRGLTAVSDMSHIRSVPSIDKGNQESHAIGLGQMNLHGYLARERIYYGSE 479

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA++  +     +++HA+ AS +LA ER   S FKG  +D+  +   S    ++  +++ 
Sbjct: 480 EALDFTNIYFYTVAYHAMRASNQLAIERA--SRFKG--FDESHYASGS--YFSKYIEQVW 533

Query: 738 MNRTSRLP---------------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           + +T R+                W  L+  V   G+ N N  A+ PT +I+ I   + SI
Sbjct: 534 LPKTPRVQTLFTDACIPIPTQQDWAALRHSVMEHGLYNQNLQAVPPTGSISYINHATSSI 593

Query: 783 DPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            P    + + K    G       ++ NE             +L Y+              
Sbjct: 594 HPIVSQIEIRKEGKIGRVYYPAPYMTNE-------------NLDYYQ------------- 627

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900
                 A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT 
Sbjct: 628 -----DAYQIGPEKMIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTL 682

Query: 901 YYLRSR 906
           YY+R R
Sbjct: 683 YYIRLR 688


>gi|297567588|ref|YP_003686559.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|297567763|ref|YP_003686734.1| NrdI protein [Meiothermus silvanus DSM 9946]
 gi|296852037|gb|ADH65051.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|296852212|gb|ADH65226.1| NrdI protein [Meiothermus silvanus DSM 9946]
          Length = 692

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 176/681 (25%), Positives = 304/681 (44%), Gaps = 81/681 (11%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN 310
           Y ++F RY  E ++   +HE             L +   F FE ++ +   Y  Y L   
Sbjct: 57  YEDFFARYTPEFLQE--IHE-------------LAFSYRFEFESFMAISKFYKDYALKTG 101

Query: 311 --GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367
             G  +E      + VA+ LA K  E + RA  +   +    +  +TPT  N+G  R  +
Sbjct: 102 DKGQYLEDYPERVVAVALHLA-KGDEAQARA--YVRAMMERRYQPATPTFLNAGRARRGE 158

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  V D L  I   L     L+K  GG+  + + +R  G  I G  G ++GV+P 
Sbjct: 159 LVSCFLLEVDDSLDSIGYNLNAAMQLSKIGGGVALNLSRLRARGEPIKGVEGAAKGVVPV 218

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     +Q G+RKGA   YL  +H D+EE L+ +K   D++ R   +     +PD
Sbjct: 219 MKLLEDAFNYADQMGQRKGAGAVYLNIFHWDLEEVLETKKINADEKSRIQTLALGLVVPD 278

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            F +   +   + +F+P  V     +   E ++    YE   +  E+K  R + A  +  
Sbjct: 279 KFFQLAAEGKPFYVFAPYSVYRAFGVPLDEMDLD-TRYEELLEHPEVKK-RPLDAREILT 336

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--------- 598
           ++  + FE+G+P++ ++   N  +P + +G +  SNLCTEI    +              
Sbjct: 337 RIARLQFESGYPYLIYRSTANRANPLKGLGQIKMSNLCTEIFQIQTPSRVGPYGTPEVVG 396

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
               CNLGS+N++     N  +   L  ++RTA   L  V D +    +    ++N    
Sbjct: 397 YDVSCNLGSLNIV-----NVMEGRALRESVRTATDALTAVSDQSEVAQVPGVARANRELH 451

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713
           AIGLG M     L    IPY S EA E A      ++++++  S+E+A+ RG  +  F+G
Sbjct: 452 AIGLGAMNLHGYLAKNEIPYESAEAREFARAFFMAVNYYSLERSMEIARARGQTFVGFEG 511

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIA 767
           S +  G +    +        E   +  + +P      W  L ++V+  G+ ++  +AIA
Sbjct: 512 SDYASGAYFAKYLERDWRPTGESVKDLFAGMPLPGPKEWARLAEQVQEHGLYHAYRLAIA 571

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P      +++   G+ T    + V  L    LW           
Sbjct: 572 PTQSISYLQNATPSVAPITD--LIETRTYGNATTY--YPVPYLSPETLW----------- 616

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                            + +A+ +D   +I+  +  Q+ +DQ  S  L++D + S ++L 
Sbjct: 617 ----------------YYKSAYRMDMYRVIDLVAGIQEHVDQGVSTVLFVDSQTSTRELA 660

Query: 887 FIYRQAWLMGLKTTYYLRSRS 907
            +Y  AW  GLK+ YY R+++
Sbjct: 661 RLYIYAWQKGLKSLYYTRTKN 681


>gi|238695117|ref|YP_002922311.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
 gi|220029253|gb|ACL78188.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
          Length = 747

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 208/799 (26%), Positives = 345/799 (43%), Gaps = 108/799 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI-FS 205
           ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  +
Sbjct: 5   VVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKVA 63

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +  + P+Y  V +   +  LR+    +VY + Q    +        +  R I  G  
Sbjct: 64  ADNITVETPDYQYVASNLAMFALRK----SVYGQFQPIDFYS-------HIERNIATGKY 112

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
            R + +     ++ YL   + ++ DF   Y G   L ++Y +    ++  IE PQ  +M 
Sbjct: 113 DREILQKYSHEEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYML 172

Query: 324 VAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDL 380
           + M L  +ETE   +  ++FYN +++      TP +  +G R P  Q SSC +    D L
Sbjct: 173 IGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIM--AGVRTPTRQFSSCVVIESDDSL 230

Query: 381 YGIFGALQENAMLAKYS--GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            GI      NA++   S   G+G +   +R  G+ I     +  GVIPF K       + 
Sbjct: 231 QGINET--ANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSC 288

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +   
Sbjct: 289 SQGGIRGGAATLYYPIWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDY 348

Query: 499 WTLFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSPD     L DLY ++ E   + YE+      ++  R + A  L+  +    F TG
Sbjct: 349 ITLFSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTG 407

Query: 558 HPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSS-----SEETAVCNLGSINLLAHF 611
             + TF D  N      ++V  +  SNLC EI L +        E ++C       LA +
Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCT------LAAY 461

Query: 612 ANNQFDYDKLASTIRTA---VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               FD + +    R A   VR LDN++D   + +E+A  +    R++G+G+  F S L 
Sbjct: 462 VLGNFDIENMEEVERIAMVMVRALDNLLDYQDYPVEQALTAKK-RRSLGVGVTNFASYLA 520

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y   +A E   ++ E + +  I ASV LA+E+GA      + + +G  PID    
Sbjct: 521 DNFFTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPID---W 575

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +  DEL ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P    
Sbjct: 576 YKKTVDEL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGI 634

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK +  G F  V                            I N+E   D         
Sbjct: 635 VSVKGSKEGQFNQV----------------------------IPNVENNAD--------- 657

Query: 849 FEIDPMW-LIESASR--------RQKWIDQAQSLNLYLDEPSGKKL----------DFIY 889
             ID +W LI+  ++         QK++DQA S N   D PS  K           D ++
Sbjct: 658 -VIDLLWTLIKKGNKPYLTLAAIMQKFVDQAISSNTSYD-PSTYKTGKVDIADVLDDMLF 715

Query: 890 RQAWLMGLKTTYYLRSRSA 908
            Q +  GLKT YY   R  
Sbjct: 716 AQYY--GLKTLYYANVRDG 732


>gi|188533085|ref|YP_001906882.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028127|emb|CAO95984.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 693

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 178/646 (27%), Positives = 286/646 (44%), Gaps = 71/646 (10%)

Query: 289 RDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           R F F+ +LG    Y  Y L   +G R    + F  RV M         +  A+   + +
Sbjct: 74  RRFRFQTFLGAWKFYTSYTLKTFDGKR--YLEGFTERVCMVALTLAKGDQPLALALTDEI 131

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 132 LSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLS 191

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 192 NLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDT 251

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ L   +  I+ + +
Sbjct: 252 KRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVERIYGLPFADISISEKYH 311

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D    + F  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 312 EMLNDARIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 367

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS +E           +   CNLGS+N+ AH      D    A T+  AVR L 
Sbjct: 368 SEILQVNSPTEYHDDLSYRRIGKDISCNLGSLNI-AH----AMDSADFARTVEIAVRGLT 422

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++
Sbjct: 423 AVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNIYFYTVTY 482

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRT 741
           HA+  S +LA+ER   +S F  S +  G +          P  S   +A +     +   
Sbjct: 483 HALRTSNQLARERSTTFSGFAQSRYASGEYFNPYLEQSWQPRTS--QVAALFANAGIAIP 540

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +R  W  LK  V   G+ N N  AI PT +I+ I   + SI P                 
Sbjct: 541 TRQQWQTLKDAVMQYGLYNQNLQAIPPTGSISYINHATSSIHP----------------- 583

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               +V+ ++ R       +    Y+     N     +D +  +  A++I P  +I++ +
Sbjct: 584 ----IVSRIEIRKEGKTGRV----YYPAPFMN-----NDNQAFYRDAYDIGPEAIIDTYA 630

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 631 EATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLR 676


>gi|254776338|ref|ZP_05217854.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 693

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 305

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 306 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 361

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 416

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 417 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 476

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG  +  F+ S +  G F       + E   E    L  +  
Sbjct: 477 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 536

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 537 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 583

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                   +V++++ R              +G IG +      + +D  + +  A+EI  
Sbjct: 584 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 622

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 623 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 681

Query: 913 KSTLKG 918
            + ++G
Sbjct: 682 GTEVEG 687


>gi|118464322|ref|YP_883081.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium 104]
 gi|118165609|gb|ABK66506.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           avium 104]
          Length = 705

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 81  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 140

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 141 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 197

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 198 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 257

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 258 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 317

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 318 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 373

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 374 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 428

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 429 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 488

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG  +  F+ S +  G F       + E   E    L  +  
Sbjct: 489 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 548

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 549 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 595

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                   +V++++ R              +G IG +      + +D  + +  A+EI  
Sbjct: 596 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 634

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 635 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 693

Query: 913 KSTLKG 918
            + ++G
Sbjct: 694 GTEVEG 699


>gi|126460402|ref|YP_001056680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
 gi|126250123|gb|ABO09214.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
          Length = 853

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 170/650 (26%), Positives = 297/650 (45%), Gaps = 78/650 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQ 388
           +RA  +Y+ ++S   + ++P  FN+ T     +SCF+  + D L  I        +  L 
Sbjct: 177 ERARLYYDYITSLKLIPASPYWFNAWTSKEMFASCFILMIEDCLSSITHPGKRCIYDVLT 236

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            + ++ +  GG+G D++ +R  G  + G+ G + G I F+K+ +     + QGGKR+GA 
Sbjct: 237 RSGLIQQAGGGVGYDFSLLRPEGDVVRGSAGVASGPISFMKLFDANVEVIKQGGKRRGAQ 296

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKR---VTQNAGWTLFSP 504
              L  WH D+ +F+  +  TG+ +     + N +  + D FM++   V ++  + L +P
Sbjct: 297 MGTLHVWHPDIRKFI--KAKTGELKDVHLQNFNISVVVDDAFMEKALDVDKDPNYPLVNP 354

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             V  +  L  K  E+     E Q  +        ++A  L+R+++   +++G P + FK
Sbjct: 355 RIV--VEKLGIKPIEVLELTREVQLPKD--ATVGSVNAKELFREIVEGAWDSGDPGLIFK 410

Query: 565 DPCNIRSPQQHVGV------VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
              N  +   +V V         +N C E+       +  VCNL  INL+          
Sbjct: 411 SNMNASNSLLYVNVDGDRYVWFGTNPCAEV----PGADKDVCNLTHINLVKFVKEGCSGR 466

Query: 616 --------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D+  LA T R  VR LD+ +DI+   ++   ++    R IGLG+MG    L
Sbjct: 467 TLEEKLECIDWAGLAETARVGVRFLDDAVDISTTGMKDVDETYRKIRKIGLGVMGLAEML 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI---- 723
             L IPYAS +AV + +  + +I  +A+  S ELA+ERG +  F  S + +GV P+    
Sbjct: 527 IKLEIPYASWDAVTLVNRVLAWIYLNALDESAELARERGPFKYFHQSDYARGVIPVLKYQ 586

Query: 724 ----------------------DSI-GLLAEVRDEL-AM-NRTSRLPWDELKKRVKTIGM 758
                                 D +  +  E R  L AM  R  +    EL ++VK  G+
Sbjct: 587 DFVWSRWERVRAAYPPEYRELGDRLKAITYETRRWLDAMAKRFGKPTLAELSEKVKG-GV 645

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  M++APT   + + G +  ++P +   ++++   G         V  L+ R LW  
Sbjct: 646 RNSVVMSVAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYWPGVEYLRARGLWTP 705

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   ++   G + +   +P+D+K + ATA EI   W +   +  Q+W+DQ  S  + + 
Sbjct: 706 EVRRAVE-ESGMLRDAP-VPEDVKHLLATAMEIHWAWHVLMQASAQQWVDQGISKTINM- 762

Query: 879 EPSGKKLDFIYRQ---AWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
            P+    D +Y     AW +G+K  T Y  +S+S   +     + +  KL
Sbjct: 763 -PANATKDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGIKQEIKKKL 811


>gi|218232459|ref|YP_002366134.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           B4264]
 gi|218160416|gb|ACK60408.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus B4264]
          Length = 682

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKAIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESSEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 533 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 578

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 579 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 621

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 622 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 670


>gi|308187850|ref|YP_003931981.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058360|gb|ADO10532.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 712

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 183/663 (27%), Positives = 303/663 (45%), Gaps = 77/663 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DF+ +   +++   R F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 79  DFEFLLALHEVAENRGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVALTLAQG 138

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +    +  +E   +LS   F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 139 DETLARALLE--EILSG-RFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 256 WLNAHHPDIFRFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKPMALFSP---YDV 312

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YG+ F    I+ +  E  AD    K +  I     ++ +  + FE+G+P+I ++D  
Sbjct: 313 ERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P    G ++ SNLC+EI  +NS+SE           +   CNLGS+N +AH     
Sbjct: 371 NRSNPI--AGRINMSNLCSEILQVNSASEYNDDLSYRRVGKDISCNLGSLN-IAH----A 423

Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   LA T+  AVR L +V  ++   ++    + N    AIGLG M     L    I Y
Sbjct: 424 MDSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHAIGLGQMNLHGYLAREGIAY 483

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDS 725
            SPEA++  +     I+++A+  S +LAQE +  +  F  S +  GV+         +  
Sbjct: 484 GSPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADSDYASGVYFDKYLQRAWLPR 543

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +A++  +  +   ++  W  L+  V   G+ N N  AI PT +I+ I   + SI P 
Sbjct: 544 TERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPI 603

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K   +G       F+ NE                       N+         +
Sbjct: 604 VSPIEIRKEGKTGRVYYPAPFMTNE-----------------------NLH--------L 632

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 633 YQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692

Query: 904 RSR 906
           R R
Sbjct: 693 RLR 695


>gi|145224884|ref|YP_001135562.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           gilvum PYR-GCK]
 gi|145217370|gb|ABP46774.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 701

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 181/663 (27%), Positives = 296/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  ++G    Y  Y L   +G R +E  +   + V++ LA  +T   ++ V
Sbjct: 77  DRAYAKKFRFPTFVGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLASGDTTLAEKLV 136

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 137 D---EIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 193

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 194 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 254 FRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 313

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I ++D  N  +P    G +
Sbjct: 314 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRANPID--GKI 369

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 370 THSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEV 424

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  +  ++   ++ N++  AIGLG M     L    I Y S E V+  +  
Sbjct: 425 SIRALTAVSDQTHIWSVPSIEQGNNSSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIY 484

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG A+  F+ S +  G F       + E + E    L  +  
Sbjct: 485 FYCVLYHALRASNRIAIERGTAFGGFEKSKYKSGEFFDKYTDQVWEPKTEKVRGLFADAG 544

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
            R+P    W +LK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 545 IRIPDQEDWKQLKASVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPIASKVEIRKEGKI 604

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       ++ NE                       N+E   D        A+EI    +
Sbjct: 605 GRVYYPAPYMTNE-----------------------NLEYYQD--------AYEIGYEKV 633

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 634 IDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 692

Query: 916 LKG 918
           ++G
Sbjct: 693 VEG 695


>gi|157955359|gb|ABW06063.1| NrdE [Bacillus thuringiensis serovar darmstadiensis]
          Length = 694

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|199598383|ref|ZP_03211802.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
 gi|199590702|gb|EDY98789.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
          Length = 723

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD + + +  NA   LFSP  V      Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVE---RAY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y++     +IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F +  
Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733
           ++  +     ++++ + AS ++A+ERG ++ +F+ S +  G +    +         +VR
Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546

Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           D    ++  ++  W  LK+ V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|111023402|ref|YP_706374.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           jostii RHA1]
 gi|110822932|gb|ABG98216.1| ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1]
          Length = 693

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 180/663 (27%), Positives = 294/663 (44%), Gaps = 72/663 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E+ A 
Sbjct: 69  DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---EELAT 125

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + + +  F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 126 KLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADVN 305

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  + YE   D+   K   KI A   ++ +  + FE+G+P+I F+D  N  +P +  G +
Sbjct: 306 VTEKYYEMVDDKRIRK--SKIKAREFFQTIAELQFESGYPYIMFEDTVNRANPIE--GKI 361

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYSEVGKDISCNLGSLNIA-----KTMDSPDFARTIEV 416

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L  V D  + +++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 417 SIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIYYGSDEGIDFTNIY 476

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + FHA+ AS  +A ERG  +  F  S +  G +       + E + E    L     
Sbjct: 477 FYTVVFHAVRASNRIAIERGTHFKGFPQSKYASGEYFDKYTDQVWEPKTERVRQLFAESG 536

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMS 796
             +P    W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + + K    
Sbjct: 537 VHIPTQDDWRELKASVQKYGIYNQNLQAVPPTGSISYINYSTSSIHPVASKIEIRKEGKI 596

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       +L N+                       N+E   D        A+EI    +
Sbjct: 597 GRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKI 625

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + 
Sbjct: 626 VDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-MALEGTE 684

Query: 916 LKG 918
           ++G
Sbjct: 685 VEG 687


>gi|41409198|ref|NP_962034.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398018|gb|AAS05648.1| NrdE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 726

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 102 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLV 161

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 162 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 218

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 219 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 278

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 279 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 338

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 339 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 394

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 395 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 449

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +  
Sbjct: 450 AIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIY 509

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS  +A ERG  +  F+ S +  G F       + E   E    L  +  
Sbjct: 510 FYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAG 569

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 570 IRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 616

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                   +V++++ R              +G IG +      + +D  + +  A+EI  
Sbjct: 617 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYQDAYEIGY 655

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 656 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 714

Query: 913 KSTLKG 918
            + ++G
Sbjct: 715 GTEVEG 720


>gi|229552272|ref|ZP_04440997.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539682|ref|YP_003174181.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus Lc 705]
 gi|229314344|gb|EEN80317.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151358|emb|CAR90330.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 723

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD + + +  NA   LFSP  V      Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSV---ERAY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y++     +IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F +  
Sbjct: 374 IE--GRIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733
           ++  +     ++++ + AS ++A+ERG ++ +F+ S +  G +    +         +VR
Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546

Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           D    ++  ++  W  LK+ V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|157955339|gb|ABW06048.1| NrdE [Bacillus thuringiensis serovar thuringiensis]
          Length = 694

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I + S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAHESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++I+   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDINQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|319406096|emb|CBI79726.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           AR 15-3]
          Length = 716

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 164/582 (28%), Positives = 263/582 (45%), Gaps = 67/582 (11%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R 
Sbjct: 159 FQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLRE 218

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GV+P +K+  D     NQ G R+GA   YL   H+D+ +FLD ++  
Sbjct: 219 AGAPIKKIENQASGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKREN 278

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527
            D++ R   ++    IPD+  +    N    LFS     D+  + GK F +I+  E+Y  
Sbjct: 279 ADEKIRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRS 335

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             D  +I+  +KISA   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLCTE
Sbjct: 336 FVDNSKIRK-KKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTE 392

Query: 588 ITLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   S + E               CNLGS+N+     ++ F       T+  AVR L  V
Sbjct: 393 ILQVSEASELDTDLTYRAVGNDISCNLGSMNIAKAMESDNF-----GRTVEIAVRALTAV 447

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ N   +    K N    AIGLG M     L    I Y + EA++  +     +++HA
Sbjct: 448 SDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREKIYYGTLEAIDFTNIYFYTVTYHA 507

Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LP---- 745
           + AS  +A+ER   +  F+ S +  G F    I    + + EL     +R    +P    
Sbjct: 508 LRASNLIARERKKMFVGFEKSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPNQRD 567

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++             
Sbjct: 568 WQELKQLVAQYGLYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRK------------ 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N         + +  A+EI P  +I++ +   +
Sbjct: 616 ------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTYAAATQ 657

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R
Sbjct: 658 HVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLR 699


>gi|258508469|ref|YP_003171220.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus GG]
 gi|257148396|emb|CAR87369.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus GG]
 gi|259649781|dbj|BAI41943.1| ribonucleotide reductase alpha subunit [Lactobacillus rhamnosus GG]
          Length = 723

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 162/609 (26%), Positives = 281/609 (46%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD + + +  NA   LFSP  V      Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVE---RAY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y++     +IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F +  
Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGH-- 429

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 430 ---SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVR 733
           ++  +     ++++ + AS ++A+ERG ++ +F+ S +  G +    +         +VR
Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVR 546

Query: 734 DELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           D    ++  ++  W  LK+ V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 DLFKNIHIPTQADWQALKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPGLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++    P+G              + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTNKMTTRDLNILRNYAHYKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|108798785|ref|YP_638982.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. MCS]
 gi|119867903|ref|YP_937855.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. KMS]
 gi|126434386|ref|YP_001070077.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. JLS]
 gi|108769204|gb|ABG07926.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. MCS]
 gi|119693992|gb|ABL91065.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. KMS]
 gi|126234186|gb|ABN97586.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 186/665 (27%), Positives = 296/665 (44%), Gaps = 76/665 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTTLAEKLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I ++D  N  +P +  G
Sbjct: 303 DISVTEKYYEMVDDSRIRK-TKIKAREFFQTLAELQFESGYPYIMYEDTVNRSNPIE--G 359

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+  E               CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +
Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F         E + E    L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQPWEPKTERVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 535 AGIRIPNQDDWRRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEG 594

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       +L N+                       N+E   D        A+EI   
Sbjct: 595 KIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E 
Sbjct: 624 KIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALEG 682

Query: 914 STLKG 918
           + ++G
Sbjct: 683 TEVEG 687


>gi|10957414|ref|NP_051640.1| ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
 gi|6460843|gb|AAF12547.1|AE001826_16 ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
          Length = 702

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 169/608 (27%), Positives = 281/608 (46%), Gaps = 73/608 (12%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386
           AL  +E+   A+E  + L +  F  +TPTL NSG  +  +L SCFL     D+L  I   
Sbjct: 126 ALARSERVDEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLDSITKT 185

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L   A L+K  GG+G + + +R  G  + G    ++GV+   K+ ++     +Q G+R G
Sbjct: 186 LSFVAELSKGGGGIGVEASNLRARGESLRGIQNVTKGVLGVAKMLDNMLRYADQAGQRPG 245

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YL   H D  + L+ +K   D+  R   ++    IPD+FM++V        F P  
Sbjct: 246 AGAVYLSVMHADFSDLLNAKKIATDEDARLKTLSIGATIPDIFMEKVRCGEDIYQFYP-- 303

Query: 507 VSDLHDLY---GKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
               H  +   G+EF  I + + Y+  AD   I+  +++SA  L   +     E+G+P++
Sbjct: 304 ----HSFFQETGREFTSIDWTKEYQALADNPNIRK-KRVSARRLLEDIAVTQGESGYPYL 358

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------TAVCNLGSINL 607
            F+   N  +P  +VG +  SNLC+EI   ++                    CNL S+ +
Sbjct: 359 LFEGNANRANPIPNVGTIKMSNLCSEILQPTTPSYFHPYGQEHRDRIGLDVSCNLASLVI 418

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                        L   +  A+R+LDNV    + H +   K++N   R+IGLG MG  S 
Sbjct: 419 -----EQTMHGGDLGRVVGAAIRMLDNVARSTSVHEVPAVKRANDEMRSIGLGAMGLHSF 473

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS 725
           L    + Y SPEA+E  D     + +HA  AS+E+A++ G  +S F+GS +  G      
Sbjct: 474 LAGKELIYGSPEALEFVDVFFAAVHYHARKASMEIARDTGFVFSGFEGSRYQSGEHFAQY 533

Query: 726 IGL-LAEVRDELAM-----NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +    A  R E+A         +R  W++L + +KT G+ +S  MAIAPT +I+ +   S
Sbjct: 534 LERDFAPRRPEVAALFEGHTLPTRADWEQLVEDIKTHGLAHSFVMAIAPTGSISYVSHAS 593

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P  + +  +++                K R ++    +S                +
Sbjct: 594 ASIMPITEKVETRTSN---------------KARTIYPMPHLS----------------E 622

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           D +  +  A+++D   ++++ +  QK +DQ  S  L+L    + + L   Y  A+ +G+K
Sbjct: 623 DTEWYYEEAYDMDQRRVLDTVAAAQKHVDQGISCTLFLPASATTRTLQSYYLYAYRLGIK 682

Query: 899 TTYYLRSR 906
           T YY R R
Sbjct: 683 TLYYTRLR 690


>gi|157955391|gb|ABW06087.1| NrdE [Bacillus thuringiensis serovar thompsoni]
          Length = 694

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFKKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|109287943|ref|YP_654637.1| hypothetical protein MIV065R [Invertebrate iridescent virus 3]
 gi|123862746|sp|Q196Z5|RIR1_IIV3 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|106073566|gb|ABF82095.1| hypothetical protein MIV065R [Aedes taeniorhynchus iridescent
           virus]
          Length = 630

 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 192/669 (28%), Positives = 298/669 (44%), Gaps = 111/669 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           R+  F+ LGLQ L D Y      S    PQ  F  +A        + E  A   Y+ +S 
Sbjct: 8   RNNLFDALGLQRLKDSYMKEDESS----PQERFAFIARQFC---ADDEPLAQRLYDYMSQ 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P L    T+     +CFL  + D   G+     E + L+   G          
Sbjct: 61  HWLSPSSPQLSFGRTKQGLPIACFLPYLHDTARGLIDTWAEVSELSMIGG--------GI 112

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           GLG  I   + KS G+IP L+  + +  A  QG  R+G+  AYL+  H ++  FL+ R+ 
Sbjct: 113 GLGVGIRQPDEKSVGIIPHLRTYDASCTAYKQGQTRRGSYAAYLDISHPEILSFLNTRRV 172

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL--FSP----DEVSDLHDLYGKEF---- 518
            GD   +  +++    +PD FMK++     W L   +P    D       L+ K      
Sbjct: 173 GGDHNYKLLNLHNGVNVPDSFMKKI-----WILSTLAPFVKMDPCPTTETLFKKAVTTLK 227

Query: 519 -------------EIAYENYERQAD---RGEI------KVFRKISAVALWRKMLTMLFET 556
                        E+++     Q D   R ++      KV   I A  LW +++    ET
Sbjct: 228 DSRYFGADDRWLGEVSFAALAEQLDVVNRWDLIDPHTGKVKETIKATELWERIILTRAET 287

Query: 557 GHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF 611
           G P+I + D  N   PQ  +++G+ +  SNLC+E+ L +    TAVC L S+NL     +
Sbjct: 288 GEPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDETRTAVCCLASLNLDYFDKW 347

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            NN+  Y  +A+ +     VL   ID    T+++A  S  + RAIG+G +GF S L    
Sbjct: 348 CNNEQFYLDVATYLDN---VLQYFIDHAPPTLKRAVHSARSERAIGIGALGFHSYLQSKM 404

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +   S  A  I  +  + IS H    ++EL + RG                 D +G    
Sbjct: 405 VDIESLPAYLINKKIFKTISSHLERVNLELGELRGEAP--------------DCVG---- 446

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790
                                    G R S+  AIAP AT + I G  S S +P   N+Y
Sbjct: 447 ------------------------TGRRFSHMTAIAPNATSSIIMGNTSPSCEPFRANIY 482

Query: 791 VKSNMSGDFTVVNSFLVNELKQR---DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  +SG F   N  L   L++R   +   E + S +K HDGS+ ++ ++    KK+  T
Sbjct: 483 KQDTISGSFVTYNKHLKRLLEERIPDNQARERVWSSIKMHDGSVQHLNQLTVQEKKVFKT 542

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKTTYYLR 904
             EI+ + L+  A+ RQKWIDQ+QS +L+ +    +++ ++++   +AWL GLKT YY R
Sbjct: 543 WPEINQLSLVMLAADRQKWIDQSQSTSLFFN--PDERISYVHKIHLKAWLHGLKTLYYFR 600

Query: 905 SRSATSVEK 913
           SR   +V+K
Sbjct: 601 SRKILTVDK 609


>gi|227329867|ref|ZP_03833891.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 693

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 189/690 (27%), Positives = 314/690 (45%), Gaps = 74/690 (10%)

Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313
           RY +EEG  +A +L +    FD +       Y   F F+ +LG    Y  Y L   +G R
Sbjct: 43  RYLVEEGYYEADVLDQ--YHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 100

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371
            +E  +     VA+ L+  +T     A    + + S  F  +TPT  N G +   +L SC
Sbjct: 101 YLERYEDRVCLVALTLSKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+ 
Sbjct: 158 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 218 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP +V  ++ +   E  +  E Y    +   I+   +I A   ++ +  
Sbjct: 278 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 335

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599
           + FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   
Sbjct: 336 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKDIS 393

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+    A+  F       T+  A+R L  V D+ +  ++   +K N    AIGL
Sbjct: 394 CNLGSMNIANAMASPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAIGL 448

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y + EAV+  +     ++FHAI AS  LA ER   +S F+ S + 
Sbjct: 449 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 508

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    I            E+ ++  ++  ++  W  L++ V   G+ N N  A+ PT
Sbjct: 509 TGEYFDKYIEQRWEPTTARARELFEQSGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 568

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P                     +V+ ++ R    E  I  + Y   
Sbjct: 569 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 604

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            + N     D+L+  +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 605 YMNN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 658

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 659 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 687


>gi|326335595|ref|ZP_08201782.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692361|gb|EGD34313.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 551

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 250/570 (43%), Gaps = 112/570 (19%)

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           S+P   N GT      SCF   +PD + GI   L E  M  K  GG    +  +R  G+ 
Sbjct: 65  SSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRHRGSA 124

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL + K+TG   
Sbjct: 125 VT-DNGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDIEEFLQI-KDTG--- 179

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               ++     +PD +++ +                                        
Sbjct: 180 YHIQNLFFGVCVPDYWIQEMIDG------------------------------------- 202

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590
                 +    LW ++L    + G P+I F D  N + PQ +      +HSSNLC+EI L
Sbjct: 203 -----DVDKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHSSNLCSEIML 257

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            SS+EE+ +C L S+NL        FD  K    ++ A+  LD V+      IEK K + 
Sbjct: 258 PSSAEESFICCLSSMNL------ELFDEWKDTKAVKLAIFFLDAVLS---EFIEKTKDNY 308

Query: 651 HT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
           +          HRA+GLG++G+ S L    IP+ S EA +    +   I   A  A+ EL
Sbjct: 309 YLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFMHIQNEAEKATQEL 368

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A   G     KG                                           G RN+
Sbjct: 369 AHIYGEPELLKG------------------------------------------YGRRNA 386

Query: 762 NCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
             MA+APT + + I G VS  I+P   N Y      G+F   N +L   L+++ + +E +
Sbjct: 387 TTMAVAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNRYLTQLLEEKGINNEDV 446

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
              ++  DGS+ ++  +    K +  T  EI PM ++  A++RQ++IDQ+QSLNL +   
Sbjct: 447 WRSIRLSDGSVQHLSELTTHEKNVFKTFKEISPMEIVTQAAQRQQYIDQSQSLNLNIPPT 506

Query: 881 SG-KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
              + ++ +  +AW +G+K+ YY RS+S  
Sbjct: 507 MPVRDVNKVILEAWKLGVKSLYYQRSQSVA 536


>gi|157955400|gb|ABW06094.1| NrdE [Bacillus thuringiensis serovar toumanoffi]
          Length = 694

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 170/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+   GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|298529116|ref|ZP_07016519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510552|gb|EFI34455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 745

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 167/619 (26%), Positives = 286/619 (46%), Gaps = 85/619 (13%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHF 351
           +L  RY    + G  +E  +  F RVA  +A +E + ++ +         FY LL    F
Sbjct: 22  VLSKRYLRKGDDGQPLEDFKTMFWRVAASVAGEEDKYQESSYNSLDLGRSFYQLLVEGKF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF +++  A++ K  GG G  ++ +R   
Sbjct: 82  LPNSPTLMNAGTDLGQLAACFVLPVGDSMDEIFDSIKNAALIHKSGGGTGFSFSRLRPKD 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FLK+ N     V QGG R+GA    L   H D+ +F+  ++  G+
Sbjct: 142 SRVGSTGGIASGPLSFLKIFNTATEQVKQGGTRRGANMGILRVDHPDIMDFIRAKERDGE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V   + ++L +P    +   L  +E              
Sbjct: 202 ----LNNFNLSVALTEKFMQSVESGSDYSLTAPQNNQETERLNARE-------------- 243

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                        ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L 
Sbjct: 244 -------------VFSLLVHKAWESGDPGIIFLDRINKDNPTPGLGEMESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL   +   A    D++ L   +  +VR LDNVID++ + +E+  +
Sbjct: 291 PYE----ACNLGSINLDRFYSPTAEGGIDWEGLREAVHLSVRFLDNVIDLSRYPLERITE 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             H  R IGLG+MGF   L  L + Y S   +++ ++ MEF+   + SAS  LAQERG +
Sbjct: 347 MVHKTRKIGLGVMGFADLLFQLRVAYDSHRGLQLGEKIMEFVQRESRSASRILAQERGPF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++ S++                R  L        P+            RN+    IAP
Sbjct: 407 PEYEHSIY---------------ARQNLG-------PY------------RNATTTTIAP 432

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + +  + G+  + VN  L   LK    + + ++ D+   
Sbjct: 433 TGTLSIIAGCSSGIEPIFALSFTRQVLDGERLLEVNPHLEEALKNTRSYSDKLMEDVA-K 491

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKL 885
            GSI  +E +  DL+ +  TA ++   + ++  +  QK+ D A  +++NL  D  + + +
Sbjct: 492 KGSIKQMEHLDQDLRDVFVTAMDVPAQYHLKMQAAFQKYTDNAVSKTVNLPFDA-TQEDV 550

Query: 886 DFIYRQAWLMGLKTTYYLR 904
             IY  A+ MG K     R
Sbjct: 551 WQIYWMAYEMGCKGVTVYR 569


>gi|328958550|ref|YP_004375936.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328674874|gb|AEB30920.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 732

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 180/672 (26%), Positives = 302/672 (44%), Gaps = 84/672 (12%)

Query: 276 FDLVYLANDLK--YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +D  ++    K  Y  +F F+ ++G    Y +Y L  N     + Q F  R+A       
Sbjct: 85  YDFAFIKKIFKQIYAANFKFKSFMGAYKFYSQYALKTNDHSKYLEQ-FEDRIAFNALYLG 143

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
                 A++    L S  +  +TPT  N+G +   ++ SCFL  + D +  I   +    
Sbjct: 144 NGDRTLAIQLAEELISQRYQPATPTFLNAGKKKRGEMISCFLIDIADSMLSIGRGVNSAL 203

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L++  GG+G + + +R  G  I      S GV+P +K+  D     NQ G+R GA   Y
Sbjct: 204 QLSRIGGGVGVNLSNIRSAGDPIKDIANASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVY 263

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L  +H D+  FL  +K   D++ R   ++    +PD + + +  N    LFSP  V   +
Sbjct: 264 LNVFHPDILGFLSTKKENADEKIRVKTLSLGLVVPDKYYELIKTNKPMYLFSPYSVEKEY 323

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +     +++ E Y+   +   IK   +I+A  L +++  +  E+G+P+I   D  N  +
Sbjct: 324 GIPFSYIDLSAE-YDNMVENLNIKK-TQINARELEQEISRLQQESGYPYILNIDTANNTN 381

Query: 572 PQQHVGVVHSSNLCTEI-------TLNS--SSEETAV---CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI       TLN+  S E+T     CNLGS N++     N     
Sbjct: 382 PVD--GKIIMSNLCSEILQPQEPSTLNADLSYEQTGTDISCNLGSSNIM-----NMLQSP 434

Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             A ++  AVR L  V D  N   +    K N  +  IGLG MG  +AL L  I Y S E
Sbjct: 435 NFAKSVNLAVRALTTVTDSSNVLEVPTISKGNSMYHTIGLGAMGLHTALALHQIEYGSKE 494

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PI--DSIGLLAEVR 733
           ++E  +     +++H++ AS E+AQERG  +  F+ S +  G +  P       L+ E  
Sbjct: 495 SIEFTEAYFLALNYHSLIASNEIAQERGETFFGFEKSKYADGSYFNPYLESEFTLVNEKV 554

Query: 734 DELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             + +N   +LP    W +LK++V   G+ + N +A+AP  +I+ +   S S+ P  Q +
Sbjct: 555 KNIFVN--IQLPTVADWKDLKEKVFQHGLYHRNRLAVAPNGSISYVNETSASLHPITQLI 612

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                              E +Q     E  +  + Y    + N E +P      + +A+
Sbjct: 613 -------------------ENRQ-----EKKVGSIFYPAPFLSN-ETLP-----YYKSAY 642

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAW 893
           + D   +I+  +  QK IDQ  SL L++                 + + + L+ +   AW
Sbjct: 643 DYDQRKIIDIYAAAQKHIDQGMSLTLFMRSTLPENIYEWKTGVSSKLTTRDLNRLRNYAW 702

Query: 894 LMGLKTTYYLRS 905
             G+K+ YY+R+
Sbjct: 703 TKGIKSLYYIRT 714


>gi|254820781|ref|ZP_05225782.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           intracellulare ATCC 13950]
          Length = 693

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 181/665 (27%), Positives = 295/665 (44%), Gaps = 76/665 (11%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   ++ V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDTILAEKLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADIS 305

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G +
Sbjct: 306 VT-EKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--GKI 361

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A TI  
Sbjct: 362 THSNLCSEILQVSTPSVFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTIEV 416

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +  
Sbjct: 417 AIRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIHYGSEEGVDFTNIY 476

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF----------PIDSIGLLAEVRDE 735
              + +HA+ AS  +A ERG+ +  F+ S +  G F          P  +   + E+  E
Sbjct: 477 FYTVLYHALRASNRIAIERGSKFGGFERSKYASGEFFDKYTEQVWEP--ATPRVREIFAE 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSN 794
             +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + + K  
Sbjct: 535 AGIRIPTQDDWRRLKESVQEHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEG 594

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       +L N+                       N+E   D        A+EI   
Sbjct: 595 KIGRVYYPAPYLTND-----------------------NLEYYQD--------AYEIGYE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E 
Sbjct: 624 KIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-LALEG 682

Query: 914 STLKG 918
           + ++G
Sbjct: 683 TEVEG 687


>gi|315654324|ref|ZP_07907232.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
 gi|315491359|gb|EFU80976.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
          Length = 733

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 187/693 (26%), Positives = 300/693 (43%), Gaps = 85/693 (12%)

Query: 260 IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEM 316
           +EEG  +A  L +   +F+ +    +  Y   F F  +LG    Y  Y L   +G R   
Sbjct: 86  VEEGYYEAETLEQ--YNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--Y 141

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375
            + F  RV M         E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  
Sbjct: 142 LERFEDRVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVR 201

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 202 LEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSF 261

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +    
Sbjct: 262 SYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARN 321

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                LFSP    D+  +YG  F      E Y    D   I+  +KI A   ++ +  + 
Sbjct: 322 KEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQ 377

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601
           FE+G+P+I F+D  N  +P    G +  SNLC+EI        LN       V     CN
Sbjct: 378 FESGYPYIVFEDTVNRANPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCN 435

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +  F     A +I  A+R L  V D+ N   +   ++ N    AIGLG 
Sbjct: 436 LGSMNIAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGA 490

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G
Sbjct: 491 MNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASG 550

Query: 720 VF-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770
            +       D     A+VR EL    +  LP    W  L   +K  G+ N N  AI PT 
Sbjct: 551 EYFEKYLQGDWTPRTAKVR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTG 609

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + SI P    + ++                                   +G 
Sbjct: 610 SISYINNSTSSIHPIASKIEIRK----------------------------------EGK 635

Query: 831 IGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
           IG +      + +D    +  A+EI    +I++ +   K +DQ  SL L+  D  + + +
Sbjct: 636 IGRVYYPAPYLTNDNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDV 695

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+K+ YY+R R A ++E + ++G
Sbjct: 696 NKAQIYAWRKGIKSLYYIRLRQA-ALEGTEVQG 727


>gi|283477830|emb|CAY73746.1| nrdA [Erwinia pyrifoliae DSM 12163]
          Length = 693

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 236/528 (44%), Gaps = 35/528 (6%)

Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL--ALKETEKEKRAVEFYN 344
           RD  F Y  ++ L  +Y +   ++G   E  Q  ++ VA  L        +      FY+
Sbjct: 71  RDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLYILVAACLFSGYPRATRLDYVKRFYD 130

Query: 345 LLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +S+F     TP +  SG R P  Q SSC L    D L  I               G+G 
Sbjct: 131 AISTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGI 188

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH +VE  
Sbjct: 189 NAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHREVESL 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFE 519
           L L+ N G +  R   M+    +  +  +R+ +    TLFSP +V  L+D +     EFE
Sbjct: 249 LVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGEDITLFSPSDVPGLYDAFFADQNEFE 308

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGV 578
             Y  YE+      I+  R + AV L+  M+     TG  +I   D CN  SP    +  
Sbjct: 309 RLYTQYEKD---DSIRKLR-VKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAP 364

Query: 579 VHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           V  SNLC EI L        N  + E A+C L + NL A  +      D L      AVR
Sbjct: 365 VRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFNLGAIES-----LDDLQELATLAVR 419

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD ++D   + I  AK+     R +G+G++ F   L    + Y+   A  +  ++ E I
Sbjct: 420 ALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGVRYSDGSANILTHQTFEAI 479

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM-NRTSRLPWDEL 749
            +  + AS ELA E+GA   F  + + QG+ PID+       +D  A+ N    L W+ L
Sbjct: 480 QYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYK-----KDLDAICNTPLLLDWEGL 534

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ VK  G+RNS   A+ P+ T + I   +  I+P   ++ +K++  G
Sbjct: 535 RESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKDG 582


>gi|301750611|gb|ADK88939.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 177/652 (27%), Positives = 289/652 (44%), Gaps = 63/652 (9%)

Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----------F 342
           GLQ  + Y+ ++L   +  R E     + R+A  LA +     + A+            F
Sbjct: 169 GLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYF 228

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKYS 397
           +  L S   + STP + N GT +   +SC+L     +TV   L  I G +   + +  ++
Sbjct: 229 FEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNV---STILSHN 285

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G            ++         IP LK  +    A N+  +R   VC Y+E WH 
Sbjct: 286 GGIGL-------CMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHS 338

Query: 458 DVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510
           D+   L  R    G++ +R  ++ +A W+PDLF KR+       ++  WTLF  +   DL
Sbjct: 339 DIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDL 398

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             L+G  FE  YE+ E+Q   GE    + I A A+ R         G P+I FKD  N  
Sbjct: 399 SRLHGDAFEKRYESLEKQG-LGERVPIQDI-AYAIVRSAAI----AGSPFIMFKDAVNRH 452

Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
                 G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R  V
Sbjct: 453 YIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACV 512

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++ +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +     E 
Sbjct: 513 LMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEV 572

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +   A+  S  L       +  F  S++ +GVF  +      + R            W+ 
Sbjct: 573 MLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVFHWER---FPDARPAFPGE------WEL 623

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  L+ 
Sbjct: 624 LRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMR 683

Query: 809 ELKQ--RDLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQ 864
           EL++        A++  L  +  S+        PD       TAF+     LI+  + R 
Sbjct: 684 ELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRA 743

Query: 865 KWIDQAQSLNLYLDEPSGKKL--DFIYR---QAWLMGLKT-TYYLRSRSATS 910
            ++D +QS+ LY+ E +   L    I R    A+  GLKT  YY + R AT+
Sbjct: 744 PYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|227112967|ref|ZP_03826623.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 693

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 189/690 (27%), Positives = 313/690 (45%), Gaps = 74/690 (10%)

Query: 258 RY-IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR 313
           RY +EEG  +A +L +    FD +       Y   F F+ +LG    Y  Y L   +G R
Sbjct: 43  RYLVEEGYYEADVLDQ--YSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKR 100

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSC 371
            +E  +     VA+ LA  +T     A    + + S  F  +TPT  N G +   +L SC
Sbjct: 101 YLERYEDRVCLVALTLAKGDT---ALASALVDEIISGRFQPATPTFLNCGKKQRGELVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+ 
Sbjct: 158 FLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKML 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 218 EDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP +V  ++ +   E  +  E Y    +   I+   +I A   ++ +  
Sbjct: 278 LAKNNQVMYLFSPYDVEQVYGVPLSEISVT-EKYHEMVNDKRIRK-SQIKAREFFQILAE 335

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS-----------EETAV 599
           + FE+G+P++ F+D  N  +P    G ++ SNLC+EI  +N +S            +   
Sbjct: 336 IQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKDIS 393

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+     +  F       T+  A+R L  V D+ +  ++   +K N    AIGL
Sbjct: 394 CNLGSMNIANAMTSPDF-----GQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAIGL 448

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y + EAV+  +     ++FHAI AS  LA ER   +S F+ S + 
Sbjct: 449 GQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSKYA 508

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    I            E+ ++  ++  ++  W  L++ V   G+ N N  A+ PT
Sbjct: 509 TGEYFDKYIEQTWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVPPT 568

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P                     +V+ ++ R    E  I  + Y   
Sbjct: 569 GSISYINHSTSSIHP---------------------IVSRIEIRK---EGKIGRVYYPAP 604

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            + N     D+L+  +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 605 YMSN-----DNLE-YYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKA 658

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+KT YY+R R   ++E + ++G
Sbjct: 659 QIYAWTKGIKTIYYIRIRQ-MALEGTEVQG 687


>gi|157955387|gb|ABW06084.1| NrdE [Bacillus thuringiensis serovar subtoxicus]
          Length = 694

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 170/649 (26%), Positives = 304/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+   GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|315657773|ref|ZP_07910653.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491570|gb|EFU81181.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 733

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 189/690 (27%), Positives = 300/690 (43%), Gaps = 79/690 (11%)

Query: 260 IEEGV-KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEM 316
           +EEG  +A  L +   +F+ +    +  Y   F F  +LG    Y  Y L   +G R   
Sbjct: 86  VEEGYYEAETLEQ--YNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--Y 141

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375
            + F  RV M         E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  
Sbjct: 142 LERFEDRVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVR 201

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 202 LEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSF 261

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +    
Sbjct: 262 SYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARN 321

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                LFSP    D+  +YG  F      E Y    D   I+  +KI A   ++ +  + 
Sbjct: 322 KEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQ 377

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CN 601
           FE+G+P+I F+D  N  +P    G +  SNLC+EI        LN       V     CN
Sbjct: 378 FESGYPYIVFEDTVNRANPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCN 435

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +  F     A +I  A+R L  V D+ N   +   ++ N    AIGLG 
Sbjct: 436 LGSMNIAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGA 490

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G
Sbjct: 491 MNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAIERGVTFEGFERSQYASG 550

Query: 720 VF-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770
            +       D     A+VR EL    +  LP    W  L   +K  G+ N N  AI PT 
Sbjct: 551 EYFEKYLQGDWTPRTAKVR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTG 609

Query: 771 TIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + + K    G       ++ N                     
Sbjct: 610 SISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTN--------------------- 648

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
             GN++   D        A+EI    +I++ +   K +DQ  SL L+  D  + + ++  
Sbjct: 649 --GNLDYYQD--------AYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKA 698

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              AW  G+K+ YY+R R A ++E + ++G
Sbjct: 699 QIYAWRKGIKSLYYIRLRQA-ALEGTEVQG 727


>gi|294993445|ref|ZP_06799136.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 210]
          Length = 693

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 679

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 680 LEGTEVEG 687


>gi|159146680|gb|ABW90784.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 177/652 (27%), Positives = 289/652 (44%), Gaps = 63/652 (9%)

Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----------F 342
           GLQ  + Y+ ++L   +  R E     + R+A  LA +     + A+            F
Sbjct: 169 GLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYF 228

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGALQENAMLAKYS 397
           +  L S   + STP + N GT +   +SC+L     +TV   L  I G +   + +  ++
Sbjct: 229 FEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNV---STILSHN 285

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G            ++         IP LK  +    A N+  +R   VC Y+E WH 
Sbjct: 286 GGIGL-------CMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHS 338

Query: 458 DVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDL 510
           D+   L  R    G++ +R  ++ +A W+PDLF KR+       ++  WTLF  +   DL
Sbjct: 339 DIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDL 398

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             L+G  FE  YE+ E+Q   GE    + I A A+ R         G P+I FKD  N  
Sbjct: 399 SRLHGDAFEKRYESLEKQG-LGERVPIQDI-AYAIVRSAAI----AGSPFIMFKDAVNRH 452

Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
                 G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R  V
Sbjct: 453 YIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACV 512

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++ +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +     E 
Sbjct: 513 LMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEV 572

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +   A+  S  L       +  F  S++ +GVF  +      + R            W+ 
Sbjct: 573 MLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVFHWER---FPDARPAFPGE------WEL 623

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  L+ 
Sbjct: 624 LRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMR 683

Query: 809 ELKQ--RDLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQ 864
           EL++        A++  L  +  S+        PD       TAF+     LI+  + R 
Sbjct: 684 ELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRA 743

Query: 865 KWIDQAQSLNLYLDEPSGKKL--DFIYR---QAWLMGLKT-TYYLRSRSATS 910
            ++D +QS+ LY+ E +   L    I R    A+  GLKT  YY + R AT+
Sbjct: 744 PYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|15610188|ref|NP_217567.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Rv]
 gi|31794229|ref|NP_856722.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis AF2122/97]
 gi|121638935|ref|YP_979159.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662904|ref|YP_001284427.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|167969653|ref|ZP_02551930.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|215412906|ref|ZP_03421610.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 94_M4241A]
 gi|218754816|ref|ZP_03533612.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis GM 1503]
 gi|224991427|ref|YP_002646116.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254552126|ref|ZP_05142573.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188083|ref|ZP_05765557.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CPHL_A]
 gi|289448729|ref|ZP_06438473.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289763229|ref|ZP_06522607.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|297635682|ref|ZP_06953462.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732680|ref|ZP_06961798.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN R506]
 gi|298526521|ref|ZP_07013930.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777357|ref|ZP_07415694.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|306781261|ref|ZP_07419598.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|306785902|ref|ZP_07424224.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|306790256|ref|ZP_07428578.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|306794751|ref|ZP_07433053.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|306804836|ref|ZP_07441504.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|306809029|ref|ZP_07445697.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|306969129|ref|ZP_07481790.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|307081184|ref|ZP_07490354.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
 gi|313660012|ref|ZP_07816892.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN V2475]
 gi|3261509|emb|CAA16136.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|31619824|emb|CAD96764.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|121494583|emb|CAL73064.1| Probable ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507056|gb|ABQ74865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|224774542|dbj|BAH27348.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289421687|gb|EFD18888.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289710735|gb|EFD74751.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|298496315|gb|EFI31609.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214249|gb|EFO73648.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|308325904|gb|EFP14755.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|308329426|gb|EFP18277.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|308333271|gb|EFP22122.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|308336926|gb|EFP25777.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|308344609|gb|EFP33460.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|308348557|gb|EFP37408.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|308353283|gb|EFP42134.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|308361068|gb|EFP49919.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
          Length = 693

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 679

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 680 LEGTEVEG 687


>gi|85726185|gb|ABC79615.1| ribonucleotide reductase alpha subunit [Borrelia hermsii DAH]
          Length = 690

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 170/660 (25%), Positives = 308/660 (46%), Gaps = 79/660 (11%)

Query: 290 DFAFE-YLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +F F+ Y+     Y  Y L +NG + +E  +   + V++ LA    E    A++  + + 
Sbjct: 80  NFKFKSYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---LALKLASEMI 136

Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N+G R   +L SCFL  V D L  I   +     L+K  GG+  + + 
Sbjct: 137 KQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSN 196

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +
Sbjct: 197 IRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTK 256

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   Q   +  F+P  +      +  E +   E Y+
Sbjct: 257 KINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEIDFDLE-YD 315

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A    I + ++I A  +  ++  + FE+G+P+I ++  CN+ +P + +G +  SNLCT
Sbjct: 316 LLASNPNI-LKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKIKMSNLCT 374

Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        +    E   +     C LGS+N++ +  N+ F++     T+  A++ L +
Sbjct: 375 EIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIV-NVVNSNFEH-----TVDIAMQALTS 428

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +        K+N+ + A+GLG+M     L    IPY S EA++        ++F+
Sbjct: 429 VCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTFFMLLNFY 488

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSI--GLLAEVRDELAMNR 740
           +I +S+ +A+ RG  +  FK S +  G +          P   +  G+ + ++  L    
Sbjct: 489 SIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIKIPL---- 544

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             +  W+ LK+ V+  G+ ++  +A+APT +I+ I   + S+ P                
Sbjct: 545 --KSDWESLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMP---------------- 586

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                +V  ++ R   +      + Y          +  +      +A+ +D   LI+  
Sbjct: 587 -----IVEPVEARVYGNSTTYYPMPY----------LSKENALFFKSAYYMDMRKLIDLI 631

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           S  Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++  SV++  L  +
Sbjct: 632 SEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 690


>gi|296393702|ref|YP_003658586.1| ribonucleoside-diphosphate reductase subunit alpha [Segniliparus
           rotundus DSM 44985]
 gi|296180849|gb|ADG97755.1| ribonucleoside-diphosphate reductase, alpha subunit [Segniliparus
           rotundus DSM 44985]
          Length = 732

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 183/662 (27%), Positives = 295/662 (44%), Gaps = 70/662 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R    + F  RV M  LAL + ++E  A 
Sbjct: 108 DQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVVMVALALADGDEE-LAC 164

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  N G +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 165 QLVEEIIEGRFQPATPTFLNCGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 224

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 225 VALLLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 284

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   E  
Sbjct: 285 MRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGVPFAEVS 344

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+  +KI+A   ++ +  + FE+G+P+I ++D  N  +P    G +
Sbjct: 345 VT-EKYFEMVDDERIRK-KKINAREFFQTIAELQFESGYPYIMYEDTVNRANPID--GRI 400

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI       T N+    + V     CNLGS+N+         D      T+ T
Sbjct: 401 THSNLCSEILQVSTASTFNADLSYSHVGKDISCNLGSLNIA-----KTMDSPDFGKTVET 455

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           ++R L +V D     ++      N    AIGLG M     L    I Y S E V+  +  
Sbjct: 456 SIRALTSVSDQTRIDSVPSIAHGNDESHAIGLGQMNLHGYLARERIHYGSEEGVDFTNIY 515

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRT 741
              + +HA+ AS ++A ERG A++ F+ S +  G F    +    E + E    L     
Sbjct: 516 FYTVLYHALWASNKIAVERGRAFAGFERSKYASGEFFDKYLNQTWEPKTERVRELFKRAK 575

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            ++P    W+ LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++     
Sbjct: 576 VQIPTKADWERLKDSVVAHGIYNQNLQAVPPTGSISYINHSTSSIHPVAAKIEIRK---- 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                               E  I  + Y    + N     D+L   +  A+EI    +I
Sbjct: 632 --------------------EGKIGRVYYPAPYLAN-----DNLD-YYQDAYEIGYEKII 665

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + +
Sbjct: 666 DTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-LALEGTEV 724

Query: 917 KG 918
           +G
Sbjct: 725 EG 726


>gi|15842617|ref|NP_337654.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CDC1551]
 gi|148824242|ref|YP_001288996.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis F11]
 gi|253797851|ref|YP_003030852.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289553158|ref|ZP_06442368.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308374764|ref|ZP_07437295.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308379399|ref|ZP_07486134.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308406043|ref|ZP_07494896.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|61230675|sp|P0A5W8|RIR1_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|61230680|sp|P0A5W9|RIR1_MYCBO RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|13882932|gb|AAK47468.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|148722769|gb|ABR07394.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis F11]
 gi|253319354|gb|ACT23957.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437790|gb|EFD20283.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308340742|gb|EFP29593.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308357116|gb|EFP45967.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308364704|gb|EFP53555.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|323718283|gb|EGB27461.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CDC1551A]
 gi|328457628|gb|AEB03051.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 4207]
          Length = 725

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 299/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 616 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 652

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 653 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 711

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 712 LEGTEVEG 719


>gi|145296528|ref|YP_001139349.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum R]
 gi|140846448|dbj|BAF55447.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 715

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 183/673 (27%), Positives = 302/673 (44%), Gaps = 74/673 (10%)

Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +D  ++ +  K    F F +   LG    Y  Y L     R  + + F  RV M +AL  
Sbjct: 81  YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 138

Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            + ++   E   + + S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++   
Sbjct: 139 ADGDRPLAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 198

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 199 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 258

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 259 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 315

Query: 511 HDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F +I+  E+Y+   D   I+   KI+A   ++ +  + FE+G+P+I ++D  N
Sbjct: 316 ERIYGKPFADISITEHYDEMVDDDRIRK-SKINARQFFQTLAEIQFESGYPYIMYEDTVN 374

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P +  G +  SNLC+EI  +++ SE           E   CNLGS+N+     +  F
Sbjct: 375 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 432

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +      TI TA+R L  V +  +  ++   +K N    AIGLG M         H+ Y 
Sbjct: 433 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 487

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730
           S EA++  +     + +  + AS ++A ERG  + +F+ S +  G     F  +     +
Sbjct: 488 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 547

Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           +   EL        P    W  LK  V   G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 548 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 607

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + ++                         E  I  + Y    + N     D+L+    
Sbjct: 608 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 637

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R 
Sbjct: 638 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 697

Query: 906 RSATSVEKSTLKG 918
           R   ++E + + G
Sbjct: 698 RQ-VALEGTEVDG 709


>gi|299782856|gb|ADJ40854.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 723

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + L
Sbjct: 90  EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G +  
Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINLN 208

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL  
Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD F + V ++A   LFSP    D+  +YGK F      +
Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P +  G +  SN
Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382

Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI          +  + ET      CNLGS N+      N  +   L  ++R  +R 
Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437

Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L ++ D    T+  + K  N    ++GLG MG    L   HI Y SP A+E        +
Sbjct: 438 LTHISDAESLTVVPSIKHGNDLSHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745
           ++  + AS E+AQE+G  +++F+ S +  G +    +    G  +    EL        P
Sbjct: 498 NYWTLVASNEIAQEKGEKFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P                   
Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             ++N +++R    E MI  + Y    + N      D    + +A++ D   +I++ +  
Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647

Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S+ L++    P+G              + L+ +   A   G+K+ YY+R+
Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|5230835|gb|AAD41036.1|AF112535_3 ribonucleotide reductase alpha-chain [Corynebacterium glutamicum]
 gi|21325302|dbj|BAB99923.1| Ribonucleotide reductase alpha subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 707

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 182/673 (27%), Positives = 299/673 (44%), Gaps = 74/673 (10%)

Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +D  ++ +  K    F F +   LG    Y  Y L     R  + + F  RV M +AL  
Sbjct: 73  YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 130

Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            + ++   E   + + S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++   
Sbjct: 131 ADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 190

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 191 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 250

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 251 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 307

Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F      E+Y+   D   I+   KI+A   ++ +  + FE+G+P+I ++D  N
Sbjct: 308 ERIYGKPFADVSITEHYDEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMYEDTVN 366

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P +  G +  SNLC+EI  +++ SE           E   CNLGS+N+     +  F
Sbjct: 367 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 424

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +      TI TA+R L  V +  +  ++   +K N    AIGLG M         H+ Y 
Sbjct: 425 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 479

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730
           S EA++  +     + +  + AS ++A ERG  + +F+ S +  G     F  +     +
Sbjct: 480 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 539

Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           +   EL        P    W  LK  V   G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 540 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 599

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + ++                         E  I  + Y    + N     D+L+    
Sbjct: 600 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 629

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R 
Sbjct: 630 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 689

Query: 906 RSATSVEKSTLKG 918
           R   ++E + + G
Sbjct: 690 RQ-VALEGTEVDG 701


>gi|215432003|ref|ZP_03429922.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289755167|ref|ZP_06514545.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289695754|gb|EFD63183.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
          Length = 693

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 298/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D    + ++     AW  G+KT YY+R R   +
Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTAPTRDVNQAQDYAWRKGIKTLYYIRLRQ-MA 679

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 680 LEGTEVEG 687


>gi|227514023|ref|ZP_03944072.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087609|gb|EEI22921.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 723

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + L
Sbjct: 90  EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G +  
Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGQTINSALQLSKIGGGVGINLN 208

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL  
Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD F + V ++A   LFSP    D+  +YGK F      +
Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P +  G +  SN
Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382

Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI          +  + ET      CNLGS N+      N  +   L  ++R  +R 
Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437

Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L ++ D    T+  + K  N    ++GLG MG    L   HI Y SP A+E        +
Sbjct: 438 LTHISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497

Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745
           ++  + AS E+AQE+G  +++F+ S +  G +    +    G  +    EL        P
Sbjct: 498 NYWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P                   
Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             ++N +++R    E MI  + Y    + N      D    + +A++ D   +I++ +  
Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647

Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S+ L++    P+G              + L+ +   A   G+K+ YY+R+
Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|19553728|ref|NP_601730.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391369|ref|YP_226771.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326710|emb|CAF21192.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 715

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 182/673 (27%), Positives = 299/673 (44%), Gaps = 74/673 (10%)

Query: 276 FDLVYLANDLKYERDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           +D  ++ +  K    F F +   LG    Y  Y L     R  + + F  RV M +AL  
Sbjct: 81  YDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCM-VALTL 138

Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            + ++   E   + + S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++   
Sbjct: 139 ADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSA 198

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 199 LQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAV 258

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 259 YLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDV 315

Query: 511 HDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             +YGK F      E+Y+   D   I+   KI+A   ++ +  + FE+G+P+I ++D  N
Sbjct: 316 ERIYGKPFADVSITEHYDEMVDDDRIRK-TKINARQFFQTLAEIQFESGYPYIMYEDTVN 374

Query: 569 IRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQF 616
             +P +  G +  SNLC+EI  +++ SE           E   CNLGS+N+     +  F
Sbjct: 375 ASNPIE--GRITHSNLCSEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAMAMDSPNF 432

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +      TI TA+R L  V +  +  ++   +K N    AIGLG M         H+ Y 
Sbjct: 433 E-----KTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYG 487

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLA 730
           S EA++  +     + +  + AS ++A ERG  + +F+ S +  G     F  +     +
Sbjct: 488 SEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKS 547

Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           +   EL        P    W  LK  V   G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 548 DKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIA 607

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + ++                         E  I  + Y    + N     D+L+    
Sbjct: 608 SKIEIRK------------------------EGKIGRVYYPAPHMDN-----DNLEYFE- 637

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R 
Sbjct: 638 DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRL 697

Query: 906 RSATSVEKSTLKG 918
           R   ++E + + G
Sbjct: 698 RQ-VALEGTEVDG 709


>gi|184154756|ref|YP_001843096.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|260663215|ref|ZP_05864107.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226100|dbj|BAG26616.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552407|gb|EEX25458.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 723

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 296/658 (44%), Gaps = 82/658 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + L
Sbjct: 90  EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADEL 148

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G +  
Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINLN 208

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL  
Sbjct: 209 NLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLGA 268

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD F + V ++A   LFSP    D+  +YGK F      +
Sbjct: 269 KKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSP---YDVERIYGKPFSYVDITK 325

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P +  G +  SN
Sbjct: 326 EYDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPIE--GTIVMSN 382

Query: 584 LCTEITL--------NSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI          +  + ET      CNLGS N+      N  +   L  ++R  +R 
Sbjct: 383 LCSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRG 437

Query: 632 LDNVIDINCHTIEKA-KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L ++ D    T+  + K  N    ++GLG MG    L   HI Y SP A+E        +
Sbjct: 438 LTHISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLL 497

Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745
           ++  + AS E+AQE+G  +++F+ S +  G +    +    G  +    EL        P
Sbjct: 498 NYWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTP 557

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P                   
Sbjct: 558 DDWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHP------------------- 598

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             ++N +++R    E MI  + Y    + N      D    + +A++ D   +I++ +  
Sbjct: 599 --IINRIEER---QEKMIGKVYYPAPYLSN------DTMPYYRSAYDTDMRSVIDTYAAA 647

Query: 864 QKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ+ S+ L++    P+G              + L+ +   A   G+K+ YY+R+
Sbjct: 648 QEHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|261749411|ref|YP_003257096.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497503|gb|ACX83953.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 571

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 176/625 (28%), Positives = 273/625 (43%), Gaps = 106/625 (16%)

Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           Y   I G  +   E P   + R++   A K  +K K   +F+N+L     + STP + N 
Sbjct: 27  YLTTIKGGYLLDGETPFEAYKRLSENAA-KILKKPKIEKKFFNILWKGWLIPSTPVMVNL 85

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI-HGTNGK 420
           GT      SCF   V D +Y I+    E A+L+K+ GG   D++ +R +G+ I +GT G 
Sbjct: 86  GTEKGLPISCFSGRVGDSMYEIYRKNLEMAILSKHGGGTSYDFSLIRSVGSPIKNGTLGT 145

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IPF+K  +   +A  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H+++
Sbjct: 146 SDGIIPFVKSYDSAIIASKQGSTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               + + FM++V +  G                           ER             
Sbjct: 206 QGVILSNSFMEKVLKKNG--------------------------KER------------- 226

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEET 597
              +LW   L    +TG P++ FKD  N   P+  +  G+ +H SNLC+EI L +    T
Sbjct: 227 ---SLWINTLKERVKTGEPYLFFKDNANRNLPENWKKNGLKIHHSNLCSEIMLPTDESHT 283

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NL  +         K   T+  A+  LD V+        N   IE A +   
Sbjct: 284 LVCCLSSLNLYKYVE------WKDTQTVFYAILFLDAVLQEFINKGKNIKGIEDAVRFAE 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +G+ S L    IP+ S ++  +  +    I   +  A+  LA+E G     
Sbjct: 338 KSRALGLGALGWHSYLQSEMIPFISVKSEILTHDIFGKIRSESQKATQYLAKEYGE---- 393

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S W+ G                                     G RN   MA+AP  +
Sbjct: 394 --SEWNIGT------------------------------------GRRNLTLMAMAPNRS 415

Query: 772 IANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            A +  G+SQ ++P   N+YV  +  G     N +L   L +       +   +    GS
Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKILIKSGYNLPEVWEQIANEKGS 475

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
              +  + +  K +     EI+ + LI+ AS RQK+IDQ QS+NL   + +  K ++ ++
Sbjct: 476 CLGLTGLSEKEKNVFLCFKEINQLELIKQASIRQKYIDQGQSINLAFHQNTPAKFINKVH 535

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
            +AW +GLK+ YY RS S    E +
Sbjct: 536 LEAWKIGLKSLYYYRSESILRAENT 560


>gi|116494954|ref|YP_806688.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei ATCC 334]
 gi|227535044|ref|ZP_03965093.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631446|ref|ZP_04674477.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105104|gb|ABJ70246.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus casei ATCC 334]
 gi|227187359|gb|EEI67426.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525911|gb|EEQ64912.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 723

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD +   +  NA   LFSP  V     +Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y+       IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F    
Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736
           ++  +     ++++ + AS ++AQERG ++ +F+ S + D   F   +  + A   D++ 
Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546

Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                ++  ++  W+ LK  V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 ALFDGIHIPTQADWEALKTSVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|308178759|ref|YP_003918165.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307746222|emb|CBT77194.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 721

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 168/615 (27%), Positives = 271/615 (44%), Gaps = 71/615 (11%)

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F  RVA          E       + + S  F  +TPT  N+G  +  +L SCFL  + D
Sbjct: 133 FGERVAATALFLGQGNETLTTSLADEMISGRFQPATPTFLNAGKAQRGELVSCFLLRLED 192

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I   +     L+K  GG+    T +R  GA I     ++ GV+P +K+  D+    
Sbjct: 193 NLESIGRGVNSALQLSKRGGGVALLLTNLRETGAPIKQIQNQASGVVPVMKILEDSFSYA 252

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K   +N  
Sbjct: 253 NQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDVTFKLAKENRD 312

Query: 499 WTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP +V+     YGK        ++Y+       I+    ISA   ++ +  + FE+
Sbjct: 313 MHLFSPYDVA---REYGKPLSDLSVNDHYDELVANPRIRK-TTISAREFFKTLAELQFES 368

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P++ F+D  N  +P    G V+ SNLC+EI       TL+++   T +     CNLGS
Sbjct: 369 GYPYVLFEDTVNRANPL--AGHVNMSNLCSEILQVNTPSTLDTAGGYTKIGNDISCNLGS 426

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+ A       D     +TI TAVR L +V D  +   +      N+   AIGLG M  
Sbjct: 427 LNIAA-----AMDSPDFGATIETAVRALTSVSDQTDIDAVPSIAAGNNASHAIGLGQMNL 481

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP 722
              L    I Y S E ++  D     +++HA+  S ++A ERG  ++ F  S +  G + 
Sbjct: 482 HGFLASQRIRYGSEEGIDFTDIYFLTVTYHALRVSNQIAIERGTTFAGFGTSAYADGSYF 541

Query: 723 --------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                   + +   +A +  ++ +   +R  W  L+K V   G+ N+   AI PT +I+ 
Sbjct: 542 DKYIERDWLPATERVAALFSQVGIAIPTREDWQALRKSVMAHGIYNAYLQAIPPTGSISY 601

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--G 832
           +   + SI P    + ++                         E  +  L Y    +   
Sbjct: 602 VNNATASIHPIAAKIEIRK------------------------EGKLGRLYYPAPHMTDA 637

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           NIE   D        A+EI    +I++ +   + +DQ  SL L+  D  + + ++     
Sbjct: 638 NIEFFED--------AYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINKAQIY 689

Query: 892 AWLMGLKTTYYLRSR 906
           AW  G+KT YY+R R
Sbjct: 690 AWRAGIKTLYYIRLR 704


>gi|191638465|ref|YP_001987631.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BL23]
 gi|190712767|emb|CAQ66773.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           casei BL23]
 gi|327382497|gb|AEA53973.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei LC2W]
 gi|327385695|gb|AEA57169.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BD-II]
          Length = 723

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD +   +  NA   LFSP  V     +Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y+       IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F    
Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736
           ++  +     ++++ + AS ++AQERG ++ +F+ S + D   F   +  + A   D++ 
Sbjct: 487 LDFTNIYFLLLNYYTLRASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546

Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                ++  ++  W+ LK  V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 ALFDGIHIPTQADWEALKTSVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|157955408|gb|ABW06100.1| NrdE [Bacillus cereus]
          Length = 694

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 170/649 (26%), Positives = 304/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+   GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|304390567|ref|ZP_07372520.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304326323|gb|EFL93568.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 733

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 182/676 (26%), Positives = 291/676 (43%), Gaps = 82/676 (12%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333
           F+ +    +  Y   F F  +LG    Y  Y L   +G R    + F  RV M       
Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLAR 158

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAM 392
             E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D++  I   +     
Sbjct: 159 GDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSALQ 218

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   Y+
Sbjct: 219 LSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYI 278

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H D+  FLD ++   D++ R   ++    +PD+  +         LFSP    D+  
Sbjct: 279 SAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVER 335

Query: 513 LYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +YG  F      E Y    D   I+  +KI A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 336 VYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNRA 394

Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI        LN       V     CNLGS+N+     +  F  
Sbjct: 395 NPID--GRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESPDF-- 450

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A +I  A+R L  V D+ N   +   ++ N    AIGLG M     L    I Y S 
Sbjct: 451 ---AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSD 507

Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAE 731
           E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +       D     A+
Sbjct: 508 EGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAK 567

Query: 732 VRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           VR EL    +  LP    W  L   +K  G+ N N  AI PT +I+ I   + SI P   
Sbjct: 568 VR-ELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIAS 626

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKK 843
            + ++                                   +G IG +      + +D   
Sbjct: 627 KIEIRK----------------------------------EGKIGRVYYPAPYMTNDNLD 652

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI    +I++ +   K +DQ  SL L+  D  + + ++     AW  G+K+ YY
Sbjct: 653 YYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYY 712

Query: 903 LRSRSATSVEKSTLKG 918
           +R R A ++E + ++G
Sbjct: 713 IRLRQA-ALEGTEVQG 727


>gi|298345733|ref|YP_003718420.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
 gi|298235794|gb|ADI66926.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
          Length = 714

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 181/665 (27%), Positives = 287/665 (43%), Gaps = 82/665 (12%)

Query: 287 YERDFAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y   F F  +LG    Y  Y L   +G R    + F  RV M         E+ AV+   
Sbjct: 93  YSHKFRFPTFLGAFKYYTSYTLKTFDGKR--YLERFEDRVCMVALYLARGDEQLAVDIME 150

Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TPT  N+G +   ++ SCFL  + D++  I   +     L+K  GG+   
Sbjct: 151 EIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSALQLSKRGGGVALL 210

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   Y+  +H D+  FL
Sbjct: 211 LTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYISAFHPDIMSFL 270

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IA 521
           D ++   D++ R   ++    +PD+  +         LFSP    D+  +YG  F     
Sbjct: 271 DTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVERVYGVPFSDISV 327

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y    D   I+  +KI A   ++ +  + FE+G+P+I F+D  N  +P    G +  
Sbjct: 328 TEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNRANPID--GRIIM 384

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI        LN       V     CNLGS+N+     +  F     A +I  A+
Sbjct: 385 SNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKALESPDF-----AKSINVAI 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ N   +   ++ N    AIGLG M     L    I Y S E ++  +    
Sbjct: 440 RALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDEGLDFTNMYFY 499

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTS 742
             +F+A+ AS  LA ERG  +  F+ S +  G +       D     A+VR EL    + 
Sbjct: 500 ATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKVR-ELFEKSSI 558

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            LP    W  L   +K  G+ N N  AI PT +I+ I   + SI P    + ++      
Sbjct: 559 HLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKIEIRK----- 613

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPM 854
                                        +G IG +      + +D    +  A+EI   
Sbjct: 614 -----------------------------EGKIGRVYYPAPYMTNDNLDYYQDAYEIGYE 644

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            +I++ +   K +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R A ++E 
Sbjct: 645 KIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQA-ALEG 703

Query: 914 STLKG 918
           + ++G
Sbjct: 704 TEVQG 708


>gi|307244662|ref|ZP_07526766.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492043|gb|EFM64092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 176/655 (26%), Positives = 290/655 (44%), Gaps = 78/655 (11%)

Query: 286 KYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           +Y + F F    Y+     Y+ Y L  +     +E      +  ++ +A  +TE  K+  
Sbjct: 78  EYIKSFGFSFQSYMSASKFYENYALKSDDGEYILEDYNDKILICSLAIANGDTEVAKKVA 137

Query: 341 EFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    L    F  +TPT  N G  R  +L SCFL TV D   GI  A+     L+K  GG
Sbjct: 138 K---RLIRQEFQPATPTFLNLGRKRAGELVSCFLLTVEDSCEGISYAVASANHLSKIGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + T +R     I G  G S GV+   K+   +    NQ G R+GA   YL   H D 
Sbjct: 195 VALNLTRLRARAESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADF 254

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +  +D +K   D+R R   ++    IPD+FM+   +N     F P  +   + L+  +  
Sbjct: 255 DALMDTKKINADERVRLATLSIGAIIPDVFMRLAEKNETGYAFYPHSIYKKYGLHLDDLN 314

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y++     +I+  ++I+      ++     E+G+P+I + D  N     + +G++
Sbjct: 315 ME-EWYDKLVADPDIRK-KEINPRQYLTRIAATQMESGYPYIVYIDTANRDHTLKDLGMI 372

Query: 580 HSSNLCTEI----------TLNSSSEE---TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             SNLC EI          +  SS+ +      CNLGS+N++    + + D       I 
Sbjct: 373 RMSNLCCEIFQYQEPSQIESYGSSASQWGQDVSCNLGSLNIVNLMESKEVD-----KAID 427

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TAVR L +V D  + H +   K  N    +IGLG M     L   +I Y + EAVE AD 
Sbjct: 428 TAVRFLTDVSDRTDIHQVPTIKMGNDKSHSIGLGAMNLHGYLMKNNIMYVTDEAVEFADV 487

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               + ++AI  S+E+A+ER   +  F+ S + +G    D +G   EV      ++  +L
Sbjct: 488 FFAMMRYYAIKTSMEIARERKETFEGFEKSEYAKGRAS-DVLGKYYEVDFRPKSDKVKKL 546

Query: 745 ----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W +L   VK +G+ N+  MAIAPT +I+ +   + SI P  + + V+  
Sbjct: 547 FEGIYVPDKNDWAKLLDEVKEVGIYNAYLMAIAPTQSISYVQNSTSSIMPITEQIEVR-- 604

Query: 795 MSGDFTVVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           + GD T +    FL NE          M+                       + +A+  D
Sbjct: 605 IYGDSTTIYPMPFLTNE---------NML----------------------FYRSAYNTD 633

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              +I+  +  Q  +DQ  S  L++ D+ + + +   Y  A+  GLK+ YY R++
Sbjct: 634 MFKVIDVVAAAQGHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 688


>gi|262362561|gb|ACY59282.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
          Length = 583

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 168/619 (27%), Positives = 284/619 (45%), Gaps = 67/619 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  + D++  
Sbjct: 2   VALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMES 58

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G
Sbjct: 59  IGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLG 118

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LF
Sbjct: 119 ARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLF 178

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE+G+P++ 
Sbjct: 179 SPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFESGYPYMM 236

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLGS+N+   
Sbjct: 237 FEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIA-- 292

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D      +I  A+R L  V ++ N  ++   +K N    AIGLG M     L  
Sbjct: 293 ---QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLAR 349

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-- 726
             + Y S EA++  +     +++HAI AS +LA ER + +  F  S +  G F    I  
Sbjct: 350 ERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIEQ 409

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   +  +  +  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   + 
Sbjct: 410 SWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHSTS 469

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P                     +V+ ++ R    E  I  + Y    + N     D+
Sbjct: 470 SIHP---------------------IVSPIEIR---KEGKIGRVYYPAPYMTN-----DN 500

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
           L + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 501 L-EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKT 559

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + ++G
Sbjct: 560 IYYIRLRQ-MALEGTEVEG 577


>gi|116493226|ref|YP_804961.1| ribonucleotide-diphosphate reductase subunit alpha [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103376|gb|ABJ68519.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 721

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 179/718 (24%), Positives = 313/718 (43%), Gaps = 88/718 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE L    K+  +A   +   L   +     E+ ++A L+ E    FD +    D   ++
Sbjct: 32  REALAAFLKENVQANTMQFDSLRERFDYLLKEDYIEAALVEE--YSFDFIEKLYDFLKQQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F+ ++     Y +Y L  N +   + + F  RVAM         E+ A+   + +  
Sbjct: 90  DFHFQSFMAAYKFYAQYALKTNNNEYYL-ENFIDRVAMNALYFADGNEELAMNIADEIIH 148

Query: 349 FHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G +H  +L SCFL    DD+  I   +     L+K  GG+G + T +
Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----E 523
              D++ R   ++    +PD F   +  +    LFSP  V     +YG+ +  AY    +
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYDLIKHDEDMYLFSPYSV---EKVYGEPY--AYVDITK 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       IK F K+ A  +  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 324 EYDNMVKNPAIKKF-KVKARNIENEISKLQQESGYPYIVNVDTANRENPI--YGKIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        +++    T +     CNLGS N++     N         ++ T VR 
Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTKLGTDISCNLGSTNIV-----NMMQTPHFGKSVETMVRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +   +  N     IGLG MG    L   H+ Y   +++E        +
Sbjct: 436 LTFVTDHSDIDVVPSIQNGNALAHTIGLGAMGLHGYLAKNHLYYGEADSIEFTSVYFMLL 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSR 743
           ++  + AS ++A+E+   + +F  S +  G     +  +  G  +    EL   +   S 
Sbjct: 496 NYWTLKASNQIAKEKNQVFHNFDKSKYADGSYFDKYVENDFGPKSNRVKELFNGIEIPSV 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +LK  V   G+ + N MA+APT +I+ I   + S+ P                   
Sbjct: 556 EDWKQLKADVMADGLYHQNRMAVAPTGSISYINDATASLQP------------------- 596

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +VN++++R    E  I  + +    + N      D  K + +A++ID   +I+  +  
Sbjct: 597 --IVNKIEER---QEKKIGKIYFPAPYLSN------DTLKYYQSAYDIDMRKVIDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPAGIYDWKEGRTDKMTTRDLNILRNYAHHEGIKSIYYVRT 703


>gi|126179941|ref|YP_001047906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
 gi|125862735|gb|ABN57924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
          Length = 548

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 168/611 (27%), Positives = 268/611 (43%), Gaps = 92/611 (15%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           +L  RY L       E P   F RVA  +         R+ EF++LLS+  F+ ++PTL 
Sbjct: 10  LLEGRYLLPG-----ETPAGLFSRVADAVG-----GTARSREFFSLLSALLFLPNSPTLM 59

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF+  + D L GIFG L   A++ +  GG G  ++ +R  G  ++G  G
Sbjct: 60  NAGTSAGQLSACFVLPMEDTLEGIFGTLGHMALIHQSGGGTGFSFSLLRPRGDAVNGVTG 119

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + F++V +    AV QGG+R+GA    L   H D+EEF+  ++  G       + 
Sbjct: 120 AATGPVSFMRVFDAATGAVRQGGRRRGANMGVLAASHPDIEEFVTAKQEGG-----LSNF 174

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + + F + +     + L +P + S                           V++ 
Sbjct: 175 NISVGVDERFFRCLATGKEYDLINPRDGS---------------------------VWKS 207

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A +LWR +      +G P + F D  N ++   H+G + ++N C E  L         
Sbjct: 208 VDAGSLWRLIAASACISGEPGVLFLDEINRQNTTPHLGRIEATNPCGEQPLYPYES---- 263

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+NL      +  D D L + +R  V  LD VID N   + + ++     R IGLG
Sbjct: 264 CNLGSVNLARCVRQHDLDEDLLITVVRCGVDFLDAVIDANRFPLPEIRERTLATRKIGLG 323

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF  AL  L IPY S EA+  A   ME I   A   S E+ +E G++ + +GS++   
Sbjct: 324 VMGFAEALIRLGIPYESEEALRFAGSLMEHIEEMARERSEEIGKEIGSFPAIEGSIFSG- 382

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                 MRN+    IAPT +I  I G +
Sbjct: 383 -------------------------------------EMRNATVTTIAPTGSIHLIAGTT 405

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP- 838
             I+P +   Y ++ + G    + S LV     R    + +   ++ H    G +  +P 
Sbjct: 406 SGIEPVFSFAYDRT-IDGRPVSIVSDLVAGFLPRTAGGKDVAEHVRRH----GTVAGLPL 460

Query: 839 -DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMG 896
            D  + +  TA EI P   +   +  QK +D A S  + L + +   ++  ++  A  +G
Sbjct: 461 DDHARDLFRTATEIAPEHHVRMQAAFQKHVDNAVSKTVNLPQSATVDEIACVFSLAHDLG 520

Query: 897 LKTTYYLRSRS 907
            K T   R RS
Sbjct: 521 CKGTTVYRYRS 531


>gi|300173990|ref|YP_003773156.1| ribonucleoside-diphosphate reductase subunit alpha [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888369|emb|CBL92337.1| ribonucleoside-diphosphate reductase, alpha subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 723

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 294/645 (45%), Gaps = 83/645 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N  + +  + +  RVAM        +E+ A+   + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGQ-QYVETYVDRVAMNALYYADGREELALRLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR  GA + G + 
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTVNSALQLSKMGGGVGINVSNVREAGAPVMGISN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 SAGGIVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKENADEKIRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536
           +    IPD F   V +N    LFSP    D+  +YGK F   +I  E Y+   +  +I  
Sbjct: 283 SLGLTIPDKFYDLVRKNDVMYLFSP---VDVEKVYGKPFNYIDITSE-YDNMVNNDKITK 338

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589
           +  + A  L  ++  +  E+G+P++   D  N  +P    G + SSNLC+EI        
Sbjct: 339 YH-VDARFLEEEISKLQQESGYPYVINIDVANRANPI--AGKIISSNLCSEILQVQTPSE 395

Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643
           L++  + T +     CNLGSIN++   A N F       ++ T VR L  V D  N   +
Sbjct: 396 LDNGQQYTRLGSDVSCNLGSINIVNMMATNNF-----GESVDTMVRALTYVSDTSNLDVV 450

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               K N    AIGLG MG  +      + Y   E+++        +++++I AS+ +A+
Sbjct: 451 PSIAKGNTEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTTTFFMTLNYYSIKASMAIAK 510

Query: 704 ERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAM-NRTSRLPWDELKKRVKTI 756
           ER   +  F+ S +  G +       D      +V    A  N  ++  W ELK  V   
Sbjct: 511 ERNDTFFEFEKSTYADGSYFDKYLEEDWAPRTQKVAASFAQHNVPTKHDWAELKADVAKY 570

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GM N+   AIAPT +I+ +   + ++ P                     +VN++++R   
Sbjct: 571 GMYNAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E MI  + Y    + N E +P      + +A++ID   +I+  +  Q+ IDQ  +L L+
Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDIDMRKVIDIYAAAQEHIDQGMALTLF 660

Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +                D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 661 MRSTLSSDLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|86156144|gb|ABC86790.1| ribonucleotide reductase alpha subunit [Borrelia turicatae]
          Length = 691

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 182/712 (25%), Positives = 329/712 (46%), Gaps = 90/712 (12%)

Query: 237 YKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE- 294
           +K P +  H+ +   LY  ++  Y EE +        +  ++LV L N       F F+ 
Sbjct: 41  FKNPNERMHYLIDNDLYENFYENYSEEQI--------LEIYNLVSLEN-------FQFKS 85

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHF 351
           Y+     Y  Y L +N     +       +A+ L L +   +   K A+E    +    +
Sbjct: 86  YMSASKFYKDYALKMNDGNTYLESYEDRIIAVSLFLADGCFDFALKLALE----MIKQRY 141

Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G +   +L SCFL  V D L  I   +     L+K  GG+  + + +R  
Sbjct: 142 QPATPTFLNAGKKVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRAR 201

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   
Sbjct: 202 GEEIRGIPNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINA 261

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D++ R   ++    IPD F     Q   +  F+P  +      +  E +   E Y+  A 
Sbjct: 262 DEKSRVQTLSLGVIIPDKFFDIAKQGKNYYAFAPYSLYKATGRFMNEIDFDLE-YDLFAS 320

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-- 588
              I + +++SA  +  ++  + FE+G+P+I ++  CN+ +P + +G +  SNLCTEI  
Sbjct: 321 DPRI-LKKELSARDILIRIARLQFESGYPYIVYQTACNLNNPLKGLGKIKMSNLCTEIFQ 379

Query: 589 -----TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                 +    EE  +     C LGS+N++ +  N+ F++     T+  A+R L +V+D 
Sbjct: 380 IQTPSVIGDYGEEDLIGYDISCILGSLNIV-NVINSDFEH-----TVDIAMRALTSVVDK 433

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +       +K+N+ + A+GLG+M     L    I Y S EA++        ++F+++ +
Sbjct: 434 ADIKNAPSIRKANNDYHAVGLGVMNLHGFLIKNKISYESAEALDFVRTFFMLLNFYSLKS 493

Query: 698 SVELAQERG-AYSSFKGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLPWDE 748
           S+ +A++RG A+  F  S +  G +              ++ ++   L +   S   W+ 
Sbjct: 494 SMNIARDRGCAFKDFNKSEYYNGNYFDMYLSEDFTPKTDVIKQIFSGLKLPLKS--DWES 551

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V+  G+ +S  +A+APT +I+ +   + S+ P  +   V++ + G+ T        
Sbjct: 552 LKRDVQIHGLYHSYRLAVAPTQSISYVQNATTSLMPIVEP--VEARVYGNSTT------- 602

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                            Y+     N E        +  +A+ +D   LI+  S  Q+ +D
Sbjct: 603 -----------------YYPMPYLNREN-----ALLFKSAYYMDMKKLIDLISEAQRHVD 640

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           Q  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++  SV++  L  +
Sbjct: 641 QGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKN-LSVDECILCAI 691


>gi|307352276|ref|YP_003893327.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307155509|gb|ADN34889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 566

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/567 (27%), Positives = 265/567 (46%), Gaps = 95/567 (16%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           +IL  RY+     S  E+ +    RVA  +A    E+     E+++++++  F+ ++PTL
Sbjct: 8   RILMLRYYRDDEKSFDELCR----RVAGAIADSPEEE----AEYFDMMNTLRFLPNSPTL 59

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N+GT   QL++CF   V D +  IF A++  AM+ K  GG G +++ +R  GA +  + 
Sbjct: 60  MNAGTDMNQLAACFTLYVGDSITEIFDAMKWGAMIHKSGGGTGYNFSNIRPEGAFVESSE 119

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G + G + F+K  +     + QGG+R+GA    L   H D+ +F++ +   GD      +
Sbjct: 120 GVASGPVSFMKAFDAVTGVIRQGGRRRGANMGILNVDHPDILKFINSKTREGD----IAN 175

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM  V   AG                   F+  +   E  A+        
Sbjct: 176 FNISVMVTDRFMGLV--EAG------------------RFDRVWITREETAE-------- 207

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I+   +W  +   ++  G P + F D  N ++    +G ++++N C E  L        
Sbjct: 208 EITVGDIWNGITEGIWRNGEPGLLFYDEINRKNMTPALGNINATNPCGEQPLLPFES--- 264

Query: 599 VCNLGSINLLAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            C LGSINL + F + + + D   L  TIRTAV+ LD +ID N + I + +++    R +
Sbjct: 265 -CVLGSINL-SKFIDEKGETDLASLEKTIRTAVKFLDRIIDKNRYPIPEIEEATKRTRKV 322

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMG   AL +  IPY SPE  +     M+F++  A+S S  LA+E+G + ++KGS+W
Sbjct: 323 GLGLMGVHDALIMRRIPYDSPEGRKYCGSIMQFVAETAVSESGRLAEEKGPFPAWKGSVW 382

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +                                 K  K +  RN+    IAPT +I+ I 
Sbjct: 383 E---------------------------------KNGKMV--RNAALTTIAPTGSISIIA 407

Query: 777 GVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL-----------KQRDLWDEAMISDL 824
             S  I+P +   Y + N +G+ F +V+     EL           ++R+     ++S +
Sbjct: 408 ECSSGIEPVFSYSYTRMNTAGESFRMVHPLFKKELETVAGKLFPNPEERERRVGEVLSHV 467

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEI 851
            +  G++ +I  +PD   KI  TA +I
Sbjct: 468 -HETGTVQDIGWLPDSFTKIFTTALDI 493


>gi|83722608|ref|YP_443886.1| ribonucleotide reductase subunit 1 [Papiine herpesvirus 2]
 gi|75905761|gb|ABA29293.1| UL39 [Papiine herpesvirus 2]
          Length = 986

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 178/651 (27%), Positives = 290/651 (44%), Gaps = 62/651 (9%)

Query: 297 GLQ--ILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEF 342
           GLQ  + Y+ ++L  I+G  +E     + R+A  LA            ++    +    F
Sbjct: 344 GLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACHADLAGRVVFGRDASWLEMFTYF 403

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQEN-AMLAKYSGGL 400
           +N   +   + STP +   GTR P  SSC+L        +    A+ +N A +   SGG+
Sbjct: 404 FNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQNVAPILARSGGI 463

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G        L          +  ++P LK  +    A N    R   V  YLE WH D+ 
Sbjct: 464 G--------LCLQNFNDRPGNASLMPALKALDSIVAAYNDQSLRPTGVTVYLEPWHSDIM 515

Query: 461 EFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLHDL 513
             L ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLFS      L   
Sbjct: 516 AVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFSHRGGMHLASF 575

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G+EFE  Y   E +   GE    + + A A+ R   T    TG P++ FKD  N     
Sbjct: 576 HGEEFERLYRCQE-ELGFGEAVPIQDV-AYAIVRAAAT----TGSPFVMFKDAVNRHYIY 629

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R  V ++
Sbjct: 630 DTQGAAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFARLRESVRACVLMV 689

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +  
Sbjct: 690 NIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVMLL 749

Query: 693 HAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            A+ AS  L    GA  +  FK S++  G F  +      + R            W+ L+
Sbjct: 750 AAMQASNALCFH-GARPFREFKRSVFRAGRFHWEG---FPDARPRYEGE------WEMLR 799

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + +   G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ L+ EL
Sbjct: 800 QSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLREL 859

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRRQK 865
           ++       +   +   D    ++ER    L   H      TAFE D   LI+  + R  
Sbjct: 860 RE-TFSGRRLNEVIDALDAKQWSVERALPCLAADHPLRRFKTAFEYDQELLIDLCADRAP 918

Query: 866 WIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           ++D +QSL L++ E +        L  +   A+  GLKT  YY + R AT+
Sbjct: 919 YVDHSQSLTLHVTERADGTLPASSLVRLLVHAYKRGLKTGMYYCKVRKATN 969


>gi|332671992|ref|YP_004455000.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulomonas
           fimi ATCC 484]
 gi|332341030|gb|AEE47613.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           fimi ATCC 484]
          Length = 715

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 72/660 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   +  AV   
Sbjct: 94  YSKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALSLAAGD---QDFAVNLV 150

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+  
Sbjct: 151 DEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGVAL 210

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 211 LLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 270

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +  
Sbjct: 271 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSPYDVERVYGVPFADVNVT- 329

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y    D   I+   KISA   ++ +  + FE+G+P++ F+D  N  +P +  G +  S
Sbjct: 330 EKYYEMVDNAAIRK-TKISAREFFQTLAELQFESGYPYVMFEDTVNRANPIK--GKITHS 386

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI       T N       V     CNLGS+N+         D      ++ TA+R
Sbjct: 387 NLCSEILQVSTPSTFNEDLSYAEVGRDISCNLGSMNIAL-----SMDSPDFGKSVETAIR 441

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +  ++   K +N    AIGLG M     L    I Y S E ++  +     
Sbjct: 442 ALTAVSDQTDIESVPSVKLANRGGHAIGLGQMNLHGYLARERIFYGSDEGLDFTNIYFYT 501

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRL 744
           +++HAI AS  LAQER  A+  F+ S +  G +    +      R E    L       +
Sbjct: 502 VAYHAIRASNLLAQERKQAFYGFEDSKYATGEYFQKYVEKEWAPRTERVRVLFAEAGVHI 561

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W EL   V+  G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 562 PTQDDWRELAALVQEHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRV 621

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ N+                       N+E   D        A+EI    +I++
Sbjct: 622 YYPAPFMTND-----------------------NLEYYQD--------AYEIGYEKVIDT 650

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 651 YAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 709


>gi|325963522|ref|YP_004241428.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469609|gb|ADX73294.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 706

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 293/660 (44%), Gaps = 74/660 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y++ F FE +LG    Y  Y L   +G R +E  +     VA+ LA      E+ A +  
Sbjct: 87  YKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLA---RGNEQLATQMV 143

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N+G +   +L SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 144 DEIIEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAF 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 204 ALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   ++    LFSP    D+  +YG  F    
Sbjct: 264 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSP---YDVERVYGMPFSDVS 320

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   IK   KI A   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 321 VTEKYYEMVDDSRIKK-TKIKAREFFQTLAEIQFESGYPYIMFEDTVNRANPID--GKII 377

Query: 581 SSNLCTEI-------TLN-----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI       T N     + + +   CNLGS+N+         D      TI TA
Sbjct: 378 MSNLCSEILQVSQPTTYNDDLSYADTGKDISCNLGSLNIA-----KTMDSPDFGLTIETA 432

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ N  ++    K N    AIGLG M     L    + Y S E ++  +   
Sbjct: 433 IRSLSAVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYF 492

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740
             + +HA+ AS  LA E G  +  F+ S +  G +       + +    +VR+    ++ 
Sbjct: 493 YSVVYHAVRASNLLAIETGQTFGGFEKSKYASGEYFDKYTEQEWVPQTEKVRELFKNVHI 552

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
            ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 553 PTQADWLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRKEGKLGRV 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L N+                       N+E   D        A+EI    +I++
Sbjct: 613 YYPAPYLTND-----------------------NLEYYQD--------AYEIGYEKVIDT 641

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 642 YAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-LALEGTEVEG 700


>gi|157955355|gb|ABW06060.1| NrdE [Bacillus thuringiensis serovar dakota]
          Length = 694

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 170/649 (26%), Positives = 305/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I   S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIADESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|327198237|ref|YP_004306813.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|297591763|dbj|BAJ09183.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|323145835|gb|ADX32076.1| hypothetical protein nrdE [Pseudomonas phage P3_CHA]
 gi|323146021|gb|ADX32261.1| hypothetical protein nrdE [Pseudomonas phage PAK_P3]
          Length = 618

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 170/571 (29%), Positives = 258/571 (45%), Gaps = 96/571 (16%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL+ + D   G+  A  E   L+   G          G+ A I   +  S GVI    
Sbjct: 116 SCFLSMIADSRKGLTTASGEAKELSMAGG--------GVGVYAGIRAPDELSTGVIEHAG 167

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDL 488
             +    A  Q   R+G++  YL+  H +   FL +R   G D + +  ++N    IPD 
Sbjct: 168 DYDVMCRAYRQTRTRRGSMAMYLDVAHPEFPVFLQMRNPVGGDPKLKRFNLNNGANIPDA 227

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+ V +   W    P                              K  RK+ A  LW +
Sbjct: 228 FMEAVIKGEDWEFVDPKHG---------------------------KTGRKVPARELWEE 260

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           ML +  +TG P++ F D  N   P+     +  V  SNLC+EITL +S + TAVC L S+
Sbjct: 261 MLQVRKDTGEPFMLFVDTVNRNLPECITHPLYRVRQSNLCSEITLYTSFKRTAVCCLSSV 320

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLM 661
           NL  +   +++  D L   I   VR LDNV++    +   ++ +A  S    RAIGLG M
Sbjct: 321 NLGTY---DEWKDDPL--FIADMVRFLDNVLEFFIRLAPPSMHRAVHSASKERAIGLGTM 375

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEF---ISFHAISASVELAQERGAYSSFKGSLWDQ 718
           GF + L    IP+ S     +   + +    I   A+ AS+EL + RG     +GS    
Sbjct: 376 GFHTLLQQRMIPFESGGMGGMQQLNYQVYKQIKEQAVQASLELGRSRGEAPDCQGS---- 431

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                                                 G RNS+ +AIAP A  +++  V
Sbjct: 432 --------------------------------------GRRNSHLLAIAPNANSSSLVNV 453

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S S +P   N +     +G F + N +L  EL++  L  +     +   +GS  +IE + 
Sbjct: 454 SPSTEPWAGNCFNAQGRAGSFLIKNEYLRRELEKVGLDTKETWRSINDAEGSCQHIEGLS 513

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           D++K +  T  EI PMWLIE+A+ RQ +I Q+QS+NLY+  + + +++  I+  AW  GL
Sbjct: 514 DEVKAVFKTIREISPMWLIEAAAGRQPFICQSQSVNLYVHPDITLQEMSDIHIYAWHKGL 573

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           K+ YY RS++A S++  T  G    LNA+PV
Sbjct: 574 KSLYYCRSKAAKSMKVGT--GGAEPLNALPV 602


>gi|312869728|ref|ZP_07729875.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094777|gb|EFQ53074.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 723

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 295/657 (44%), Gaps = 82/657 (12%)

Query: 289 RDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F  ++     Y +Y L  +     + + +  RVAM         E+ A++  + + 
Sbjct: 91  QDFHFHSFMAAYKFYAQYALRTDDKEYYL-ENYIDRVAMNALYLADGDEELAMDLADEII 149

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +
Sbjct: 210 LREAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YEN 524
           K   D++ R   ++    +PD F + V ++A   LFSP    D+  +YGK F      + 
Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEKDADMYLFSP---YDVERIYGKPFSYVDITKE 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      EI+  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 327 YDNLVANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPID--GKIVMSNL 383

Query: 585 CTEI--------TLNSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI          +  S ET      CNLGS N+      N  D      ++R  +R L
Sbjct: 384 CSEIAQVQVPSKVADDQSYETLGTDISCNLGSTNIA-----NMMDSPDFGRSVRAMMRGL 438

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            ++ D+ N   +   K+ N    ++GLG MG  S L   HI Y SP A+E        ++
Sbjct: 439 THISDVENLTVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLN 498

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLP- 745
           + ++ AS E+A+ER   + +F  S +  G     +     G  ++V  +L        P 
Sbjct: 499 YWSLVASNEIAKERQETFHNFDKSSYADGSYFDKYTTKDWGPQSDVVKDLFHGIFIPGPA 558

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK++V   G+ N   +A+AP  + + I   + S+ P                    
Sbjct: 559 DWAALKEKVMQDGLYNEYRLAVAPNGSTSYINDSTASLTP-------------------- 598

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            ++N +++R    E MI  + Y    + N      D    + +A++ID   +I++ +  Q
Sbjct: 599 -IINRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDIDMRKVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ+ SL L++    P G              + L+ +   A+  G+K+ YY+R+
Sbjct: 649 QHVDQSMSLTLFMRSTIPEGLYEWKNGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|301066518|ref|YP_003788541.1| ribonucleotide reductase subunit alpha [Lactobacillus casei str.
           Zhang]
 gi|300438925|gb|ADK18691.1| Ribonucleotide reductase, alpha subunit [Lactobacillus casei str.
           Zhang]
          Length = 723

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 162/609 (26%), Positives = 278/609 (45%), Gaps = 80/609 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 RIGGGVGLTLSNLREAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD +   +  NA   LFSP  V     +Y
Sbjct: 258 FHPDIISFLGAKKENADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVY 314

Query: 515 GKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           GK F      + Y+       IK + KI A  L  ++  +  E+G+P+I   D  N  +P
Sbjct: 315 GKPFSYVDITKEYDNMVANPAIKKY-KIKARDLENEISKLQQESGYPYIINIDTANRANP 373

Query: 573 QQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
            +  G +  SNLC+EI        LN+  E   +     CNLGS N+     +  F    
Sbjct: 374 IE--GKIIMSNLCSEIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDF---- 427

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+
Sbjct: 428 -GRSVEAMVRALTYVTDHSNIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPES 486

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL- 736
           ++  +     ++++ + AS ++AQERG ++ +F+ S + D   F   +  + A   D++ 
Sbjct: 487 LDFTNIYFLLLNYYTLKASNKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVR 546

Query: 737 ----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                ++  ++  W+ LK  V   G+ + N MA+AP  +I+ I   S S+ P        
Sbjct: 547 ALFDGIHIPTQADWEALKISVMKDGLYHQNRMAVAPNGSISYINDTSASLQP-------- 598

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +VN ++ R    E  I  + Y    + N      D    + +A++ID
Sbjct: 599 -------------IVNRIEDR---QEKKIGTIYYPAPDLSN------DTMPYYQSAYDID 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMG 896
              +I+  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G
Sbjct: 637 MRKVIDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKG 696

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 697 IKSIYYIRT 705


>gi|254173913|ref|ZP_04880584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
 gi|214032162|gb|EEB72993.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
          Length = 1361

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 144/554 (25%), Positives = 259/554 (46%), Gaps = 60/554 (10%)

Query: 389  ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            EN M+  ++ GL  +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA 
Sbjct: 747  ENGMVFVHNTGL--NFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804

Query: 449  CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               LE WH D+E+F+  + +NTG +     +++   W  + F + + +   + L +P   
Sbjct: 805  MGILEVWHPDIEKFIHAKERNTGTNVLSNFNISVGIW--EDFWEALKEGKRYPLVNP--- 859

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                               R  ++      ++I   +L+ ++  M +    P + F D  
Sbjct: 860  -------------------RTGEK-----VKEIDPKSLFEELAFMAWSKADPGVIFFDVI 895

Query: 568  NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYD 619
            N R+   +   G + ++N C E  L     E   CNL SIN LA F          FD+D
Sbjct: 896  NRRNVLAEAKGGPIRATNPCGEEPLY----EYESCNLASIN-LAKFVKYDDEGKPYFDWD 950

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            + A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E 
Sbjct: 951  EYAYVIQKVAKYLDNAIDVNRFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 1010

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
                 ++ E+++F+A   SVE A++RG +  ++ S +  G  P++               
Sbjct: 1011 FAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSAYKDGELPVEG----------FYHR 1060

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F
Sbjct: 1061 EIWTLPWDELVEEIKRHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1120

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              V+    +ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  +  I +
Sbjct: 1121 YYVDPVFESELKKRGLWSDEILRKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILA 1180

Query: 860  ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914
             +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    SVE  
Sbjct: 1181 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGE 1240

Query: 915  TLKGVDGKLNAVPV 928
              K V  K ++  V
Sbjct: 1241 KRKRVPAKPSSYAV 1254



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V   G        D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIKWAIKRAMLEV---GVH-----DDKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 96



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E++ L++S  FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ K  GG
Sbjct: 243 EYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKSGGG 301


>gi|312973114|ref|ZP_07787287.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|310333056|gb|EFQ00270.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
          Length = 718

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 168/570 (29%), Positives = 268/570 (47%), Gaps = 43/570 (7%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
           +L+    DF +   A+   +   F F+ +LG    Y  Y L   +G R    + F  RV 
Sbjct: 76  VLNRYSRDFVITLFAH--AHTSGFRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVT 131

Query: 326 M-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGI 383
           M  L L + + E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I
Sbjct: 132 MVALTLAQGD-ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 191 GRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFS 310

Query: 504 PDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I 
Sbjct: 311 P---YDVERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIM 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH
Sbjct: 368 YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH 424

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 425 ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 480

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 481 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 540

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 541 NWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 600

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNE 809
           SI P    + + K   +G       F+ NE
Sbjct: 601 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE 630


>gi|319891737|ref|YP_004148612.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161433|gb|ADV04976.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465094|gb|ADX77247.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 701

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 199/731 (27%), Positives = 326/731 (44%), Gaps = 98/731 (13%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHH---EMQCLY----PEYFCRYIEEGVKARLLHESMMD 275
           F LEK  +E L +  ++ Q  T H   E++ L+      ++    EE  +A+L+      
Sbjct: 27  FQLEK-DQEALASYLEEIQDKTVHFDSELERLHFLVDNHFYYNVFEEYSEAQLV------ 79

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKET 333
            +L+  A ++ +   FA  Y+     +  Y L  N     +E      M V+  LA    
Sbjct: 80  -ELIAFATEIPFR--FA-SYMSASKFFKDYALKTNDKSQYLEDYHQHVMIVSFYLAKGNV 135

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           E  K+ ++    +    +  +TPT  N+G  R  +L SCFL  V D L  I         
Sbjct: 136 ELAKKLIQ---AMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQ 192

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL
Sbjct: 193 LSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYL 252

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H DVEEFLD +K   D+  R   ++T   +P  F +   +   + +F+P  V   + 
Sbjct: 253 NIFHYDVEEFLDTKKINADEDLRLSTISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYG 312

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCN 568
           +   +  I  E Y+R  +   I    K +     R+ML M+ +T    G+P++ FKD  N
Sbjct: 313 VTLDDINID-EYYDRLVENPNIMKKSKDA-----REMLNMIAQTQLQSGYPYLMFKDNAN 366

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHFAN 613
                 ++G +  SNLCTEI      +ET+V               CNLGS+N++    +
Sbjct: 367 RVHANSNIGQIKMSNLCTEIF---QLQETSVIHDYGVDDEIKRDISCNLGSLNIVNVMES 423

Query: 614 NQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           NQF       ++ T +  L  V D  N       KK+N    ++GLG+M     L   HI
Sbjct: 424 NQF-----RDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNHI 478

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLL 729
            Y S EA + AD     +++++I  S+++A+ERG  +  F  S +  G +     S   L
Sbjct: 479 SYESEEAKDFADVFFMMMNYYSIERSMQIAKERGETFKDFDKSDYASGRYFERYTSEDFL 538

Query: 730 --AEVRDELAMNRT--SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +E    L  N T  +R  W  L+  V+  G+ ++  +AIAPT +I+ +   + S+ P 
Sbjct: 539 PKSEKVKALFANHTIPTRDDWKVLQAEVEKYGLYHAYRLAIAPTQSISYVQNATSSVMP- 597

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
                               +V+++++R   +      + +          +       +
Sbjct: 598 --------------------IVDQIERRTYGNSETFYPMPF----------LSPQTMWYY 627

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +AF ID M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R
Sbjct: 628 KSAFNIDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTR 687

Query: 905 SRSATSVEKST 915
           ++   SVE+ T
Sbjct: 688 NK-LLSVEECT 697


>gi|83319418|ref|YP_424095.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283304|gb|ABC01236.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 720

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 170/661 (25%), Positives = 292/661 (44%), Gaps = 69/661 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +  RV M        
Sbjct: 82  FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 140

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393
              +A      +    F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L
Sbjct: 141 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 200

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R  G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+ 
Sbjct: 201 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 260

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+   LD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 261 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKV 317

Query: 514 YGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           YGK   +  I  + YE   +    K +  ISA   +  +  + FE+G+P+I F+D  N R
Sbjct: 318 YGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRR 375

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDY 618
           +     G +  SNLC+EI   S++ E +             CNLGS+N+     + +   
Sbjct: 376 NAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK--- 432

Query: 619 DKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + + +I  A+  LD V  + +       KK N  + A+GLG M     L    I Y SP
Sbjct: 433 -EFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGAMNLHGFLATNKIMYDSP 491

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726
           EAV+  +     ++++A  AS +LAQE   ++SF  S +  G +                
Sbjct: 492 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQT 551

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + E+  +  +   S+  W EL + +K  G+ NS+ MA+APT +I+ +   + S+ P  
Sbjct: 552 NRVKELFKDYDVQIPSQTDWIELVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 611

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + V+         V ++ +N              ++ Y+  ++G  E  PD +  I A
Sbjct: 612 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVA 657

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R 
Sbjct: 658 AA---------------QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRI 702

Query: 906 R 906
           R
Sbjct: 703 R 703


>gi|66957898|gb|AAQ73541.2| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 796

 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 272/621 (43%), Gaps = 82/621 (13%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD--LYGIFGALQENAMLAKYSGG 399
           F+NLLS    +  TP +   G ++  L+SC+L   P    L  +    Q+   +  + GG
Sbjct: 188 FFNLLSHNIIIPPTPAMLFMGRKNRSLASCYLLDPPQKTTLEAMSAVAQDIIPILNHRGG 247

Query: 400 LG---NDW--TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +G   ND+  TP            G+  G +   K+ +   +  N   +R   VC ++E 
Sbjct: 248 IGINVNDYNQTP----------REGRKLGFLGLAKLIDTCVLLSNSDSERPTGVCMFMEP 297

Query: 455 WHIDVEEFLDLRK-NTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLH 511
           W+ DVE FL ++   T +   R  ++  A WIPDLFMKR     N  W+LF  D  + L 
Sbjct: 298 WNADVESFLGIKGLTTLEHHLRCDNIFNALWIPDLFMKRYMADPNTTWSLFD-DRCNHLA 356

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            LYGKEFE  Y   E           R++    L  K++     TG P+I FKD CN   
Sbjct: 357 KLYGKEFEDEYHRLETAG-----MAVRQMPIKELLFKIIRSAIMTGSPFIMFKDSCNRHY 411

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------- 611
                G  +  SNLCTEI  ++  +   VCNL ++NL A                     
Sbjct: 412 YMDTQGQAIRGSNLCTEIIHHTEPDSDGVCNLMNVNLPAFLTLSFNKETYCLSDDTLWQE 471

Query: 612 --------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                    +  F+++KL   +  A   ++ +ID + H   K +      R++G+G  G 
Sbjct: 472 HNKFCTPGGHRYFNFEKLTEAVTAATIFINVMIDRSVHPTTKTQNGAKNFRSMGIGFQGL 531

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFP 722
            +   +L     +P+A ++     E +   A  AS EL Q     +  F  S + +G+  
Sbjct: 532 NTLCWILGETLVTPKARKLGKTICEAMYLSAAEASNELCQLGLSPFKRFSESRYARGIMH 591

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+   +  +        T +  W  L+ ++   G+ NS  +A+ PT + + I   S++ 
Sbjct: 592 FDAWDNVGSL--------TFQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAF 643

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIP 838
            P + NLY K +++G+    N  L+ +L    K +D  D   +  L+ H   +G  E  P
Sbjct: 644 YPVFTNLYSKLSVNGETVKPNVMLLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFP 699

Query: 839 DDLKKIHA-----TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----SGKKLDFIY 889
            DL   HA     TAFE D   L+E  + R  ++D +QS  LY  E     S K +    
Sbjct: 700 -DLPTDHAIRKYLTAFEYDQNTLLELTADRAPFVDHSQSNTLYFLEGKTPISAKYIMNHL 758

Query: 890 RQAWLMGLKT-TYYLRSRSAT 909
             A+ +GLKT  YY R + AT
Sbjct: 759 VTAYKLGLKTGMYYCRIKKAT 779


>gi|12045086|ref|NP_072897.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|255660232|ref|ZP_05405641.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|1350599|sp|P47473|RIR1_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3844834|gb|AAC71452.1| ribonucleoside-diphosphate reductase, alpha chain [Mycoplasma
           genitalium G37]
 gi|166078758|gb|ABY79376.1| ribonucleoside-diphosphate reductase, alpha chain [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 721

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 170/623 (27%), Positives = 279/623 (44%), Gaps = 89/623 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           RV M + +       +A++    +    F  +TPT  N+G  +  +  SC+L  + D++ 
Sbjct: 127 RVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNME 186

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+  D+    NQ 
Sbjct: 187 SIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLEDSFSYSNQL 246

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+  +    N    L
Sbjct: 247 GQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQLAKNNEMMAL 306

Query: 502 FSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           FSP    D++  YGK        E+ YE  E Q  +   K F  ISA   ++ +  + FE
Sbjct: 307 FSP---YDIYQEYGKALSDISVTEMYYELLENQRIK---KTF--ISARKFFQTIAELHFE 358

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLG 603
           +G+P+I F D  N R+   H   +  SNLC+EI   S   E               CNLG
Sbjct: 359 SGYPYILFDDTVNRRNA--HKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDISCNLG 416

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMG 662
           S+N+     +      +LA  I+ A+  LD V  I+   T    KK N  + A+GLG M 
Sbjct: 417 SLNIARAMESGS----ELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGLGAMN 472

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    I Y S EAV+  +     +++HA SAS +LA E G +  F+ + +  G + 
Sbjct: 473 LHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFADGSY- 531

Query: 723 IDSIGLLAE------------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            D    +A             + D+  +   ++  W +L   ++  G+ NS+ MAIAPT 
Sbjct: 532 FDKYTKVASDFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIAPTG 591

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ +   + S+ P                     +V+ ++ R              +G 
Sbjct: 592 SISYLSSCTPSLQP---------------------VVSPVEVR-------------KEGK 617

Query: 831 IGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           +G I  +P      D+ +     A+E+    +I   +  Q+ +DQA SL L++ D+ + +
Sbjct: 618 LGRI-YVPAYKLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVDQAISLTLFMTDKATTR 676

Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906
            L+  Y  A+  G  + YY+R R
Sbjct: 677 DLNKAYIYAFKKGCSSIYYVRVR 699


>gi|26553538|ref|NP_757472.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
 gi|26453544|dbj|BAC43876.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
          Length = 725

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 166/610 (27%), Positives = 283/610 (46%), Gaps = 87/610 (14%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E+ A+ + + + +  +  +TPT  N+G +   +  SC+L  V D++  I  A      L+
Sbjct: 146 EQDALTYLDEMMTGRYQAATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRATTTGLQLS 205

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    T +R  GA I G   ++ G+IP +K+  D     NQ G+R+GA   YL  
Sbjct: 206 KRGGGVAYCLTNLREFGAPIKGIKNQATGIIPVMKILEDVFSYANQLGQRQGAGAVYLNA 265

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+ +FLD ++   D++ R   ++    +PD+      +N    LFSP    D+   Y
Sbjct: 266 FHPDILKFLDSKRENADEKIRIKSLSLGVVVPDIAFHLARENKDMALFSP---YDIQREY 322

Query: 515 GK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           GK   +  I  E YE   +   I   + ISA  L++++  + FE+G+P+I F D  N ++
Sbjct: 323 GKPMSDISIT-EEYENLLNNPNITK-KYISARKLFQQIAEVQFESGYPFILFDDIANEKN 380

Query: 572 PQQHVGVVHSSNLCTEIT-LNSSS-----------EETAVCNLGSINLLAHFANNQFDYD 619
              +  ++  SNLCTEIT +N+ S            E   CNLGS+N+    A    D  
Sbjct: 381 SALNNRIIM-SNLCTEITQINTPSILNTDLTYEQLGEDVCCNLGSLNI----AKVMEDGA 435

Query: 620 KLASTIRTAVRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
               T++ A++ LD++  +    +  TIE     N  +RA+GLG M     L    I Y 
Sbjct: 436 NFGKTVKYAIKALDSIAHLADLSSAPTIENG---NSKNRAVGLGAMNLHGFLATNKIYYD 492

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGV-----FPI 723
           S EAV+  +     +++HA  AS E A+E G  + +FK      GS +D+       +  
Sbjct: 493 SEEAVDFTNMFFYTMAYHAYKASNETAKETGFVFENFKNTKYADGSYFDKYTQCEENYWT 552

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+  E  +   ++  W +L + +K  G+ NS+ MA+APT +I+ +   + S+ 
Sbjct: 553 PKTERVKELLKEYKLAIPTKQDWIQLTEDIKKFGLANSHLMAVAPTGSISYLSSCTPSLQ 612

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP----- 838
           P                     +V+ ++ R              +G +G +  +P     
Sbjct: 613 P---------------------IVSPIEIR-------------KEGKVGRV-YVPAYKID 637

Query: 839 -DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
            ++       A+EI    +I+  S  Q+ +DQA S+ L+L E  + + L+  Y  A+   
Sbjct: 638 VNNYMYYAKGAYEIGVNPIIDICSAAQQHVDQAISMTLFLTENATTRDLNKAYIYAFNKK 697

Query: 897 LKTTYYLRSR 906
             + YY+R R
Sbjct: 698 CVSIYYIRIR 707


>gi|154686151|ref|YP_001421312.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens FZB42]
 gi|154352002|gb|ABS74081.1| NrdE [Bacillus amyloliquefaciens FZB42]
          Length = 700

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 175/658 (26%), Positives = 291/658 (44%), Gaps = 92/658 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F  ++     Y+ Y L  N  +  +E  +     VA+  A  +TEK K   E+ 
Sbjct: 85  YAKKFRFPSFMSAFKFYNDYALKTNDKKRILERYEDRISIVALFFANGDTEKAK---EYV 141

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           NL+ +  +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K  GG+  
Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +F
Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E ++  
Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMT- 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE   D   +K   K++A  L  K+  +  E+G+P+I F+D  N      HV  V  S
Sbjct: 321 AMYEELVDNPRVKK-EKVNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFS 379

Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S         EE  +     CNLGS+N+L     N   +  +  T++ A  
Sbjct: 380 NLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-----NVMKHKSIERTVKLATD 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V +  +       +++N   ++IGLG M     L    I Y SPEA + A+     
Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737
           ++F++I  S ELA+E+G  +  ++GS +  G +             + I  L E      
Sbjct: 495 VNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFE-----G 549

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789
           M+  +   W ELK  V   GM +S  + IAPT +I+ +   + S+ P        +Y N 
Sbjct: 550 MHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                M G     N F   E                                      A+
Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ IDQ  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|304398690|ref|ZP_07380562.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304353901|gb|EFM18276.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 712

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 182/663 (27%), Positives = 301/663 (45%), Gaps = 77/663 (11%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALK 331
           DFD +   +++  +  F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  
Sbjct: 79  DFDFLLELHEVAEKWGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVALTLAQG 138

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           +    +  +E   +LS   F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 139 DETLARALLE--EILSG-RFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 195

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 196 LQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 255

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+
Sbjct: 256 WLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENRPMALFSP---YDV 312

Query: 511 HDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             +YG+ F    I+ +  E  AD    K +  I     ++ +  + FE+G+P+I ++D  
Sbjct: 313 ERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQTLAEIQFESGYPYIMYEDSV 370

Query: 568 NIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQ 615
           N  +P    G ++ SNLC+EI  +NS+SE           +   CNLGS+N +AH     
Sbjct: 371 NRSNPI--AGRINMSNLCSEILQVNSASEYHDDLSYRRIGKDISCNLGSLN-IAH----A 423

Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   LA T+  AVR L +V  ++   ++    + N    AIGLG M     L    I Y
Sbjct: 424 MDSRDLARTVDVAVRALTSVSMMSEIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAY 483

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--------IDS 725
            SPEA++  +     I+++A+  S +LAQE +  +  F  S +  GV+         +  
Sbjct: 484 GSPEALDFTNLYFYCITYYALRTSNQLAQEHQKTFEGFADSQYASGVYFDKYLQREWLPR 543

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  +  +  +   ++  W  L+  V   G+ N N  AI PT +I+ I   + SI P 
Sbjct: 544 TERVTTLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPI 603

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + + K   +G       F+ NE                       N+         +
Sbjct: 604 VSPIEIRKEGKTGRVYYPAPFMTNE-----------------------NLH--------L 632

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 633 YQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692

Query: 904 RSR 906
           R R
Sbjct: 693 RLR 695


>gi|327409754|ref|YP_004347174.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
 gi|326784928|gb|AEA07062.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
          Length = 1027

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 169/308 (54%), Gaps = 24/308 (7%)

Query: 288 ERDFAFEYLGLQILYDRYF---------LHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
           ERD  F+++ +  L   Y          LH+N    E PQ  ++RVA  L + + +  K+
Sbjct: 110 ERDMKFDWMAVSTLEKSYLVKRKGYDGNLHLN----ERPQQLYLRVATFLCMPDMKNIKK 165

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
              +YN LS   F  ++PTLFN+G +  +LSSCFL  VPD L  +     + A ++  SG
Sbjct: 166 ---YYNCLSKGKFTMASPTLFNAGLKKFKLSSCFLGIVPDSLNKMAQVWADIAAISSGSG 222

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   TPVR   + I G  G+S G + FL+V N     V+Q G+RKG+   +L  WH+D
Sbjct: 223 GVGYSVTPVRH--SDIGGL-GQSSGAVSFLRVPNAVLGYVDQAGRRKGSGTFFLACWHVD 279

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D +K  GDD  R  ++  A W  DLFMKRV  N  W+LF P+E   L D+YG EF
Sbjct: 280 IFDFVDAKKPGGDDLMRAREIFYAIWTSDLFMKRVKDNGDWSLFCPNEAPGLDDVYGSEF 339

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE++    ++     + A  LW  +L    E G P+I +KD    +S Q++ G+
Sbjct: 340 ETLYERYEKEGRAKKV-----VKAQELWHHILVAQVEVGMPFIAYKDAICRKSNQKNFGM 394

Query: 579 VHSSNLCT 586
            HS NLC 
Sbjct: 395 PHSLNLCV 402



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 173/364 (47%), Gaps = 48/364 (13%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C EI  N+S +E A CNL SI L  +       ++  KL    R  +R+L+NV+D NC+ 
Sbjct: 646  CMEICQNTSEDEIASCNLASICLPEYVDKKTGAYNLKKLWRNARKVIRILNNVVDRNCYP 705

Query: 643  --IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              I K K++N  HR IGLG+ G      ++ + +   EA  +  +  E I   AI+ S +
Sbjct: 706  PEIPKIKRTNLRHRPIGLGVQGLADVFAIMGLSWLDEEAKMLNRQIFETIYHAAITESRK 765

Query: 701  LAQERGA-------YSSFKGSLWDQGVF----------------PIDSIGLLAEVRDELA 737
            +++ER         Y +F GS   +G F                P D I +     +++ 
Sbjct: 766  MSKERARFGCAVPYYETFPGSPLSKGFFSHDLWDVENIHKKTGIPFDDITI-----EQVK 820

Query: 738  MNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             +R +R        + WD  +++ +  G+ NS  +A+ PTA+ A I   +++ +P    +
Sbjct: 821  EHRKARGIPESYCGIDWDSERRKTQRDGVYNSFMIALMPTASTAQILRNNEAFEPFTNII 880

Query: 790  YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKI- 844
              ++ +SG F +VN   V+++ +  +W++   +      GS+  I      + D ++KI 
Sbjct: 881  GKRTVLSGTFAIVNKHFVDDMIELGIWNKKNRAICLTGKGSVQGIVCEDPSLADAVEKIK 940

Query: 845  --HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
              +  AFE+    + E    R +++DQ  S N ++  P+ +KL   +   W  G KT  Y
Sbjct: 941  RKYLNAFELSQKRVCELGIDRSRYVDQTSSHNCFMKNPTYQKLTSYHFYQWEEGAKTGMY 1000

Query: 902  YLRS 905
            YLR+
Sbjct: 1001 YLRT 1004


>gi|297622358|ref|YP_003703792.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
 gi|297163538|gb|ADI13249.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
          Length = 554

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 166/582 (28%), Positives = 254/582 (43%), Gaps = 106/582 (18%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  F++ L+   +  S+P   N G       SCF + VPD + GI GA  E  +++KY G
Sbjct: 53  AERFFDYLARGFYSLSSPIWANFGLSRGLPISCFGSYVPDSMAGILGAAAEVGIMSKYGG 112

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  GA I   NG S+G + FL++ +       QG  R+G+  AYL   H D
Sbjct: 113 GTSAYFGDLRPRGAPIR-DNGFSEGAVNFLRLFDTLIDVTKQGATRRGSFAAYLPIDHPD 171

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           VEEFL +R +              N I +LF                        +G   
Sbjct: 172 VEEFLAIRSD-------------GNPIQNLF------------------------FGVAV 194

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
             A+    R  D  + +V         W K+L    E G P++ F D     +P+ +   
Sbjct: 195 SDAWLEAMRAGDADKRRV---------WAKVLQKRTEVGLPYVLFTDNATRGAPEVYRDR 245

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
             VV SSNLCTEI L  + +E+ VC+L S+NL        +D  +    +R  V  LD V
Sbjct: 246 GLVVRSSNLCTEIMLPVAEDESFVCDLASMNL------ATYDAWRATDAVRLLVFFLDAV 299

Query: 636 I------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           +        +    E+A++    HRA+G+G++G+ S L    +P+ S +A  +  +    
Sbjct: 300 MTEFIDKSASLPFFERARRFAVRHRALGVGVVGYHSLLQARRVPFGSLQAALLNRQIFRE 359

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A  AS ELA+  G  +  +G+                                   
Sbjct: 360 LREAADDASAELARRYGEPALCEGT----------------------------------- 384

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+  +A+APT + A I G VS S++P   N YV+       T  N  L  
Sbjct: 385 -------GRRNTTLLAVAPTTSSAFILGGVSPSVEPLRSNYYVRDLAKAVVTYRNPALRE 437

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L++R     A+   +  HDGS+ +++ + D+ K + AT  EI P  +I  A+ RQ +ID
Sbjct: 438 VLRERGHDTPAVWRSILAHDGSVQHLDCLSDEEKGVFATFSEISPRDIIVQAAGRQAFID 497

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           Q QSLNL +  E   + L+ +  +A   GLK+ YY  + SA 
Sbjct: 498 QGQSLNLMIHPETPARDLNALVLEAHARGLKSLYYQHAISAA 539


>gi|319948550|ref|ZP_08022681.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
 gi|319437797|gb|EFV92786.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
          Length = 693

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 183/673 (27%), Positives = 301/673 (44%), Gaps = 92/673 (13%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A 
Sbjct: 69  DHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAGD---ETLAR 125

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +  + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 126 QLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNLREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
            +FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F 
Sbjct: 246 YKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFA 302

Query: 519 --EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             +I+  NY    +   IK   KI+A   ++ +  + FE+G+P+I ++D  N  +P    
Sbjct: 303 DVDIS-ANYHEMVEDSRIKK-TKINARHFFQTVAELQFESGYPYIMYEDTVNRANPI--A 358

Query: 577 GVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLC+EI   S++ E               CNLGS+N+         D      T
Sbjct: 359 GKITHSNLCSEILQVSTASEFNEDLTYSHVGKDISCNLGSLNIA-----KAMDSPDFGRT 413

Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           I TA+R L  V D  + +++   ++ N    AIGLG M     L    I Y S E ++  
Sbjct: 414 IETAIRGLTAVSDQTHINSVPSIERGNSESHAIGLGQMNLHGYLARERIHYGSEEGIDFT 473

Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSI-GLLA 730
           +     + +HA+ +S  +A+ERG  ++ F  S +  G F             D +  L A
Sbjct: 474 NIYFYTVLYHALRSSNLIARERGTWFAGFPESKYASGEFFDKYTDQTWEPATDRVRQLFA 533

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E   E+A+   ++  W  LK  V+  G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 534 EA--EVAI--PTQEDWRALKADVQKYGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIE 589

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHA 846
           ++                                   +G IG +      + +D    + 
Sbjct: 590 IRK----------------------------------EGKIGRVYYPAPYLTNDNLDYYQ 615

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   + +DQ  SL L+  D  + ++++     AW  G+KT YY+R 
Sbjct: 616 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTREVNRAQIYAWRKGIKTLYYIRV 675

Query: 906 RSATSVEKSTLKG 918
           R   ++E + ++G
Sbjct: 676 RQ-LALEGTEVEG 687


>gi|317052120|ref|YP_004113236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
 gi|316947204|gb|ADU66680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
          Length = 725

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 166/618 (26%), Positives = 270/618 (43%), Gaps = 82/618 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCST 355
           +L  RY+L    G  +E  +    RVA  +AL + E    E+    F++L+ S  F+ ++
Sbjct: 17  VLQRRYYLKDAQGHPVENWEKLCRRVANAVALPDRELDDYEEVRDHFFSLIYSLDFLPNS 76

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G  ++ +R   A + 
Sbjct: 77  PCLMNAGTGIGQLSACFVLPVEDSMEGIFTAVKNGALVHKTGGGTGYSFSRLRPRNATVS 136

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T G + G + F  V +     + QGGKR+GA    +   H D+ +F+  +    +D+ R
Sbjct: 137 STQGVASGPLSFAAVFDVATETIKQGGKRRGANMGVMRVDHPDIMDFICAK----EDQTR 192

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            ++ N +  I D FM+ +     + L  P           KE                  
Sbjct: 193 FNNFNFSVAITDEFMQALYDEREYALVDP---------VTKE------------------ 225

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           +   ++A  ++ K++ + +  G P + F D  N  +P   +G   ++N C E  L     
Sbjct: 226 IVSSLNARTVFDKIVDLAWHNGEPGVLFIDAANRANPTPQLGEFEATNPCGEQWLLPYES 285

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNLGSINL       + DYD+LA T R A R LDNVID N   I + K+     R 
Sbjct: 286 ----CNLGSINLGNFVEGGRVDYDRLARTTRLATRFLDNVIDCNVFPIPEIKEMTMKTRK 341

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L  + + YAS E  ++  E M++I   +   S+ELA+ +G + +F    
Sbjct: 342 IGLGIMGMHDMLIQMGLSYASNEGRKLCAEVMKYIRTISEETSIELAKVKGPFPAF---- 397

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                             D      T R               RN+   +I PT T++ I
Sbjct: 398 ------------------DPAINTYTPR---------------RNAALTSIQPTGTVSMI 424

Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              +   +P +  + VK  M GD   +VN       +    +   +++ +    G++   
Sbjct: 425 ADCASGCEPYFSIVMVKHVMDGDKLLMVNKHFEEIARAEGFYSTELMARVA-DSGTVVGH 483

Query: 835 ERIPDDLKKIHATAFEIDPMWLIE-SASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQA 892
           E IP   ++I  TA +I P   I+     +Q  +D + S  + +   + K+ +   Y   
Sbjct: 484 EEIPVKWQEIFCTAQDITPSDHIQMQGILQQSGVDSSISKTINMPNTATKEDVRLAYLMG 543

Query: 893 WLMGLK--TTYYLRSRSA 908
           + MG K  T Y   SR  
Sbjct: 544 YEMGCKGLTVYRDGSRDG 561


>gi|262165763|ref|ZP_06033500.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
 gi|262025479|gb|EEY44147.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
          Length = 722

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 161/610 (26%), Positives = 276/610 (45%), Gaps = 67/610 (10%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RV M         E  A++    + S  F  +TPT  N+G +   +L SCFL  + D++ 
Sbjct: 137 RVVMTALTLARGDEAFAMQLMREILSGRFQPATPTFINAGKKSRGELISCFLLRIEDNME 196

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 197 SIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMKLLEDSFSYANQL 256

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +   +N    L
Sbjct: 257 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDITFELAKKNKEMYL 316

Query: 502 FSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           FSP    D+  +YG  F +I+  E Y+   +  EI+   KI+A  L++ +  + FE+G+P
Sbjct: 317 FSP---YDVERVYGVPFADISVNEKYDEMVENAEIRK-TKINARELFQTIAEIQFESGYP 372

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINL 607
           ++ F+D  N  +P    G +  SNLC+EI   S + +               CNLGS+N+
Sbjct: 373 YLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQYLGTDISCNLGSLNI 430

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    D   L  ++  AVR L  V +++   ++   +K N    AIGLG M     
Sbjct: 431 A-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAIGLGQMNLHGF 485

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           L    I Y S E ++  +     I+FH + AS ++A+E+   +  F+ S +  G +    
Sbjct: 486 LAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSRYASGEYFTPY 545

Query: 726 IG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +         ++  + +  A+   ++  W +LK+ V   G+ N N  A+ PT +I+ I  
Sbjct: 546 LQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVPPTGSISYINY 605

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P    + ++                         E  +  + Y    + N    
Sbjct: 606 STSSIHPITAKIEIRK------------------------EGQVGRVYYPAPYMTN---- 637

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
            D+L   +  A+EI P  +I++ +   + +DQ  SL L+     + + ++     AW  G
Sbjct: 638 -DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDINKAQIYAWKKG 695

Query: 897 LKTTYYLRSR 906
           +KT YY+R R
Sbjct: 696 IKTLYYVRLR 705


>gi|328957626|ref|YP_004375012.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328673950|gb|AEB29996.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 725

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 191/702 (27%), Positives = 315/702 (44%), Gaps = 104/702 (14%)

Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR 313
           YIEE        E ++ +D  +   L +D+ Y R F F  ++     Y +Y L  N G R
Sbjct: 69  YIEE--------EFLLKYDRAFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTNDGER 119

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370
            +E  +   +  A+ LA  +TE   R A E  N      +  +TPT  N+G  R  +L S
Sbjct: 120 FLERYEDRIVFNALYLADGDTELASRLADEIVNQ----RYQPATPTFLNAGRKRRGELVS 175

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL    DD+  I   +     L++  GG+G + + +R  G  I   +  S GV+P +K+
Sbjct: 176 CFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVMKL 235

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F 
Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFY 295

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALW 546
           +    +    LFSP    D+  +YG+ F  AY    + Y+   +  EI+   KISA  L 
Sbjct: 296 ELAAHDEQMYLFSP---YDVERIYGEPF--AYIDITKEYDNMVNNEEIRK-SKISARELE 349

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEE-- 596
            ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI          N  + E  
Sbjct: 350 NEISKLQQESGYPYIINVDTANRENPV--YGTITMSNLCSEILQVQEPSLINNDQTYEHL 407

Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653
                CNLGS N++    ++ F      ++I T VR L  V D  +   +   K  N  +
Sbjct: 408 GTDISCNLGSTNIVNLMKSSDF-----GNSIDTMVRALTMVTDQSSIDAVPSIKNGNDKY 462

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712
             IGLG MG  + L L  I Y SPE+VE  D   + ++++ + +S ++A+ER   + +F+
Sbjct: 463 HTIGLGAMGLHTYLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERNTTFYNFE 522

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTIGMRNSNCMAI 766
            S +  G +    I        E   +     ++P    W  LK+ V   G+ + N +A+
Sbjct: 523 KSSYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTIEDWAALKEAVMRDGLYHQNRLAV 582

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   S S+ P  +                  L+ E +++        +   Y
Sbjct: 583 APTGSISYVNETSSSLHPITR------------------LIEERQEKK-------TGKTY 617

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG-- 882
           +         + +D    + +A+++D   +I+  +  QK IDQ  SL L+L  + P G  
Sbjct: 618 YPAPF-----LSNDTMPYYTSAYDMDMRKVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLY 672

Query: 883 ------------KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
                       + L+ +   AW  G+K+ YY+R+ +  S E
Sbjct: 673 EWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRTFTENSEE 714


>gi|300859088|ref|YP_003784071.1| ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686542|gb|ADK29464.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206795|gb|ADL11137.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331349|gb|ADL21543.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277041|gb|ADO26940.1| Ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis I19]
          Length = 719

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 179/652 (27%), Positives = 293/652 (44%), Gaps = 79/652 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYN 344
           Y   F F+ +LG    Y  Y L     R  + + F  RV M  L L + + +  A    +
Sbjct: 98  YAHKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVCMVALTLADGD-QNLARNLVD 155

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+   
Sbjct: 156 EIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALL 215

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FL
Sbjct: 216 LSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFL 275

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY 522
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F +I+ 
Sbjct: 276 DTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKAFADISV 332

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E+Y    +   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G V+ 
Sbjct: 333 SEHYAEMVEDPRIRK-SKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIE--GRVNM 389

Query: 582 SNLCTEI-TLNSSS-----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI  +N+ S            E   CNLGS+N+         D    A TI TA+
Sbjct: 390 SNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAM-----TMDSPDFAKTIETAI 444

Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V +    +++   +K N    AIGLG M     L   HI Y S E ++  +    
Sbjct: 445 RGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFA 504

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID---SIGLLAEVRDELAMN 739
            + +  + AS +LA+ERG  +  F+ S +  G +     P D       +A++  + ++ 
Sbjct: 505 AVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDGFDPADFAPKTEKVAKIFADSSIY 564

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W +LK  V   G+ N    A+ PT +I+ I   + SI P    + ++       
Sbjct: 565 TPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 618

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMW 855
                                       +G IG +      + ++     A A+EI    
Sbjct: 619 ----------------------------EGKIGRVYYPAPHMDNENLDYFADAYEIGFEK 650

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 651 VIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLR 702


>gi|163791217|ref|ZP_02185633.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159873487|gb|EDP67575.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 727

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 189/701 (26%), Positives = 315/701 (44%), Gaps = 102/701 (14%)

Query: 259 YIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFE-YLGLQILYDRYFLHIN-GSR 313
           YIEE        E ++ +D  +   L +D+ Y R F F  ++     Y +Y L  N G R
Sbjct: 71  YIEE--------EFLLKYDREFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTNDGER 121

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSC 371
            +E  +   +  A+ LA  +T   K A    + + +  +  +TPT  N+G  R  +L SC
Sbjct: 122 FLERYEDRIVFNALYLADGDT---KLASRLADEIVNQRYQPATPTFLNAGRKRRGELVSC 178

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL    DD+  I   +     L++  GG+G + + +R  G  I   +  S GV+P +K+ 
Sbjct: 179 FLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVMKLL 238

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F +
Sbjct: 239 EDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFYE 298

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----ENYERQADRGEIKVFRKISAVALWR 547
               +    LFSP    D+  +YG+ F  AY    + Y+   +  EI+   KISA  L  
Sbjct: 299 LAAHDEQMYLFSP---YDVERIYGEPF--AYIDITKEYDNMVNNEEIRK-SKISARELEN 352

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------NSSSEE--- 596
           ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI          N  + E   
Sbjct: 353 EISKLQQESGYPYIINVDTANRENPV--YGTITMSNLCSEILQIQEPSLINNDQTYEHLG 410

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
               CNLGS N++    +  F       +I T VR L  V D  +   +   K  N  + 
Sbjct: 411 TDISCNLGSTNIVNLMKSPNF-----GQSIDTMVRALTMVTDQSSIDAVPSIKNGNDRYH 465

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713
            IGLG MG  + L L  I Y SPE+VE  D   + ++++ + +S ++A+ERG  + +F+ 
Sbjct: 466 TIGLGAMGLHTFLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERGTTFYNFEK 525

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTIGMRNSNCMAIA 767
           S +  G +    I        E   +     ++P    W  LK+ V + G+ + N +A+A
Sbjct: 526 SKYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTIEDWAALKEAVMSDGLYHQNRLAVA 585

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   S S+ P  +                  L+ E +++        +   Y+
Sbjct: 586 PTGSISYVNETSSSLHPITR------------------LIEERQEKK-------TGKTYY 620

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG--- 882
                    + +D    + +A+++D   +I+  +  QK IDQ  SL L+L  + P G   
Sbjct: 621 PAPF-----LSNDTMPYYKSAYDMDMRQVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLYE 675

Query: 883 -----------KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
                      + L+ +   AW  G+K+ YY+R+ +  S E
Sbjct: 676 WKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRTFTENSEE 716


>gi|262171414|ref|ZP_06039092.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
 gi|261892490|gb|EEY38476.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
          Length = 722

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 161/610 (26%), Positives = 276/610 (45%), Gaps = 67/610 (10%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RV M         E  A++    + S  F  +TPT  N+G +   +L SCFL  + D++ 
Sbjct: 137 RVVMTALTLARGDEAFAMQLMREILSGRFQPATPTFINAGKKSRGELISCFLLRIEDNME 196

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 197 SIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMKLLEDSFSYANQL 256

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +   +N    L
Sbjct: 257 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDITFELAKKNKEMYL 316

Query: 502 FSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           FSP    D+  +YG  F +I+  E Y+   +  EI+   KI+A  L++ +  + FE+G+P
Sbjct: 317 FSP---YDVERVYGVPFADISVNEKYDEMVENAEIRK-TKINARELFQTIAEIQFESGYP 372

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINL 607
           ++ F+D  N  +P    G +  SNLC+EI   S + +               CNLGS+N+
Sbjct: 373 YLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQHLGTDISCNLGSLNI 430

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    D   L  ++  AVR L  V +++   ++   +K N    AIGLG M     
Sbjct: 431 A-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAIGLGQMNLHGF 485

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           L    I Y S E ++  +     I+FH + AS ++A+E+   +  F+ S +  G +    
Sbjct: 486 LAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSRYASGEYFTPY 545

Query: 726 IG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +         ++  + +  A+   ++  W +LK+ V   G+ N N  A+ PT +I+ I  
Sbjct: 546 LQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVPPTGSISYINY 605

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P    + ++                         E  +  + Y    + N    
Sbjct: 606 STSSIHPITAKIEIRK------------------------EGQVGRVYYPAPYMTN---- 637

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
            D+L   +  A+EI P  +I++ +   + +DQ  SL L+     + + ++     AW  G
Sbjct: 638 -DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDINKAQIYAWKKG 695

Query: 897 LKTTYYLRSR 906
           +KT YY+R R
Sbjct: 696 IKTLYYVRLR 705


>gi|220916577|ref|YP_002491881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954431|gb|ACL64815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 171/613 (27%), Positives = 269/613 (43%), Gaps = 76/613 (12%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355
            +L  RY L   G + IE P+A F RVA  +A  E    +   A  F   +++   + ++
Sbjct: 10  HVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEHPAARALWAERFEARMAALELLPNS 69

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R  G  + 
Sbjct: 70  PTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVVK 129

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  G     
Sbjct: 130 TTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAAG----- 184

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +   PD       ++ GW L  P                          RG   
Sbjct: 185 LENFNISVSAPDALFHAAARSGGWALRHP--------------------------RGG-A 217

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V R++ A  L  ++    + +G P + F D     +P   +G   + N C E  L     
Sbjct: 218 VVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE- 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  + +  +R 
Sbjct: 277 ---ACTLGSVNLARFERGGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEISRRNRK 333

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+  F  S 
Sbjct: 334 IGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS- 392

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                                A  R+   P             RN+    IAPT T+A I
Sbjct: 393 ---------------------APARSGGRP------------RRNATVTTIAPTGTLAII 419

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  I+P +   YV+  +  D  +           R    EA +  ++   G    + 
Sbjct: 420 AGCSSGIEPLFALTYVRHALD-DAALPEEHPALGRALRAAGAEAALPAVRAA-GRARGVA 477

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S + +   YR A+ 
Sbjct: 478 GVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVACAYRLAFE 537

Query: 895 MGLKTTYYLRSRS 907
           +G K     R  S
Sbjct: 538 LGCKGITVYRDGS 550


>gi|323227179|gb|EGA11353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
          Length = 674

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 181/617 (29%), Positives = 281/617 (45%), Gaps = 76/617 (12%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A +  + + 
Sbjct: 88  FRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEML 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 145 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 205 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F +IA  E 
Sbjct: 265 RENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDVQRRYGKPFGDIAISER 321

Query: 525 Y-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           Y E  AD    K +  I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SN
Sbjct: 322 YDELIADPHVRKTY--INARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSN 377

Query: 584 LCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI  +NS+S                CNLGS+N +AH      D   +  T+ TA+R 
Sbjct: 378 LCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRG 432

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++      N    AIGLG M     L    I Y SPEA++  +     I
Sbjct: 433 LTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTI 492

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA---MNRT 741
           ++HA+  S+ LA+ERG  ++ F  S +  G +    +        A+VR   A   +   
Sbjct: 493 TWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLP 552

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
           +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G   
Sbjct: 553 TREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVY 612

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F+ NE                       N++   D        A++I P  +I++ 
Sbjct: 613 YPAPFMTNE-----------------------NLDMYQD--------AYDIGPEKIIDTY 641

Query: 861 SRRQKWIDQAQSLNLYL 877
           +   + +DQ  SL L+ 
Sbjct: 642 AEATRHVDQGLSLTLFF 658


>gi|28804675|dbj|BAC58079.1| iibonucleotide reductase large subunit [Cercopithecine herpesvirus
           1]
          Length = 997

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 264/593 (44%), Gaps = 49/593 (8%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F+        + STP +   GTR P +SSC+L   P            ++ LA  +  +G
Sbjct: 413 FFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVN-PQ-------TTTTHSTLAAITQNVG 464

Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
                  G+G  +   N   +G   ++P LK  +    A N    R   V  YLE WH D
Sbjct: 465 PILARSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSD 524

Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLF+      L 
Sbjct: 525 IMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLS 584

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
             +G+EFE  Y   E     G+    + + A A+ R   T    TG P++ FKD  N   
Sbjct: 585 RFHGEEFETLYVRQEENG-FGQAMPIQDL-AYAIVRAAAT----TGSPFVMFKDAVNRHY 638

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R  V 
Sbjct: 639 IYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVL 698

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +++ +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +
Sbjct: 699 MVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVM 758

Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
              A+  S  L    GA  +  FK S++  G F  +      + R            W+ 
Sbjct: 759 LLAAMQTSNALCFH-GARPFHEFKHSMFSAGRFHWEG---FPDARPRYEGE------WER 808

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +   G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ L+ 
Sbjct: 809 LRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQ 868

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRR 863
           EL++       +   +   D    ++E+    L   H      TAFE D   LI+  + R
Sbjct: 869 ELRE-TFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADR 927

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
             ++D +QSL LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 928 APYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|30984467|ref|NP_851899.1| ribonucleotide reductase subunit 1 [Macacine herpesvirus 1]
 gi|30844281|gb|AAP41457.1| large subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 997

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 264/593 (44%), Gaps = 49/593 (8%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F+        + STP +   GTR P +SSC+L   P            ++ LA  +  +G
Sbjct: 413 FFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVN-PQ-------TTTTHSTLAAITQNVG 464

Query: 402 NDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
                  G+G  +   N   +G   ++P LK  +    A N    R   V  YLE WH D
Sbjct: 465 PILARSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSD 524

Query: 459 VEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLF+      L 
Sbjct: 525 IMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLS 584

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
             +G+EFE  Y   E     G+    + + A A+ R   T    TG P++ FKD  N   
Sbjct: 585 RFHGEEFETLYVRQEENG-FGQAMPIQDL-AYAIVRAAAT----TGSPFVMFKDAVNRHY 638

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R  V 
Sbjct: 639 IYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVL 698

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +++ +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +
Sbjct: 699 MVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVM 758

Query: 691 SFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
              A+  S  L    GA  +  FK S++  G F  +      + R            W+ 
Sbjct: 759 LLAAMQTSNALCFH-GARPFHEFKHSMFSAGRFHWEG---FPDARPRYEGE------WER 808

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +   G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ L+ 
Sbjct: 809 LRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQ 868

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWLIESASRR 863
           EL++       +   +   D    ++E+    L   H      TAFE D   LI+  + R
Sbjct: 869 ELRE-TFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADR 927

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
             ++D +QSL LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 928 APYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|332638432|ref|ZP_08417295.1| ribonucleotide-diphosphate reductase subunit alpha [Weissella
           cibaria KACC 11862]
          Length = 723

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 174/683 (25%), Positives = 311/683 (45%), Gaps = 86/683 (12%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFM 322
           V  ++L +   +F +  L + LK  +DF F+ ++     Y +Y +  N S   + + +  
Sbjct: 68  VDQKMLQQYSFNF-ITRLYDYLK-AQDFQFKSFMAAYKFYAQYAVKTNDSEYYV-ENYID 124

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           R+AM         E+ A+   + +    +  +TP+  N+G +R  +L SCF+    DD+ 
Sbjct: 125 RIAMNALFYGAGNEELAMNLADEMVHQRYQPATPSFLNAGRSRRGELVSCFILQTTDDMN 184

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I   +     L+K  GG+G + + +R  GA I G +  + GV+P +K+  D+    NQ 
Sbjct: 185 AIGRVINSALQLSKIGGGVGINLSNLREAGAPIKGISNAASGVVPVMKLLEDSFSYSNQM 244

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F   +  NA   L
Sbjct: 245 GQRNGAGVTYLSVFHPDIMSFLATKKENADEKVRVKTLSLGVTVPDKFYDLIRSNADMFL 304

Query: 502 FSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP    D+   YG+ F   +I  E Y+      +IK + KI A  L  ++  M  E+G+
Sbjct: 305 FSP---YDVEREYGEPFNYIDITAE-YDNMVANPKIKKY-KIRARDLENEISKMQQESGY 359

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSIN 606
           P++   D  N  +P    G V SSNLC+EI     + E               CNLGS N
Sbjct: 360 PYVINIDTVNAANPIH--GKVISSNLCSEILQVQKASEIDNEQQYVTMGSDVSCNLGSTN 417

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           ++   A   F     A ++ T +R L  V D  +   +   +  N    A+GLG MG  +
Sbjct: 418 IVNMMATTDF-----ARSVETMMRALTFVSDNSDLDIVPSVQNGNRELHAVGLGAMGLHA 472

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721
                H+ Y   EA++  +     ++++ + AS ++A+ERG ++  F+ S +  G +   
Sbjct: 473 FFAKNHMYYGDEEALDFTNVYFLMLNYYTLLASNKIAKERGESFYEFEKSAYADGSYFNK 532

Query: 722 --PIDSIGLLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               D     A+V++    +   ++  W  LK+ V+  G+ N+  +AIAPT +I+ +   
Sbjct: 533 YLMADWSPKTAKVQEIFEQHHFPTKHDWAMLKESVQKHGLYNAYRLAIAPTGSISYVNDS 592

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + S+ P                     ++N++++R    E  I  + Y    +G      
Sbjct: 593 TASLHP---------------------IINKIEER---QEKKIGKIYYPAPYLGT----- 623

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSG 882
            D    + +A+ +D   +I+  +  Q+ IDQ  +L L++                D+ + 
Sbjct: 624 -DTLPYYESAYNLDMRKVIDVYATAQQHIDQGMALTLFMRSTIPAGLYEWKNGRTDKMTT 682

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           + L+ +   A+  G+K+ YY+R+
Sbjct: 683 RDLNILRMYAYHKGVKSIYYVRT 705


>gi|163793808|ref|ZP_02187782.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
 gi|159180919|gb|EDP65436.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
          Length = 768

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 170/621 (27%), Positives = 277/621 (44%), Gaps = 96/621 (15%)

Query: 299 QILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355
           QI   +Y L + G  +E  PQ  + RVA  LA  E  K++   A  FY  +  + F+ + 
Sbjct: 10  QIWDMKYRLRVEGEAVEASPQDSWRRVATALAEAEAPKDRARWAERFYEAMEGYRFLPAG 69

Query: 356 PTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT R   L +CF + T+PD + GIF +L+E A+  +  GG+G D++ +R  GA 
Sbjct: 70  RILAGAGTGRSVTLFNCFVMGTIPDSMGGIFESLKEAALTMQQGGGIGYDFSTLRPRGAP 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ V +     +   G R+GA+ A L   H D+E F++ ++    D 
Sbjct: 130 VKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATLRCDHPDIEAFVEAKR----DP 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R    N +  I D FM+ V  +  W L                FE A            
Sbjct: 186 SRLRMFNLSVLITDPFMEAVKTDGDWDLV---------------FEGA------------ 218

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
              +R + A ALW +++   ++   P + F D  N R+   +   + ++N C E  L   
Sbjct: 219 --AYRTVKARALWDRIMQTTYDVAEPGVIFIDRINQRNNLHYCETISATNPCGEQPL--- 273

Query: 594 SEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 C LGS+NL    A     +   D   LA  +  AVR++DNV+D++   +E    
Sbjct: 274 -PPYGACLLGSVNLATLIARPFEADAALDETALAEIVPLAVRMMDNVVDVSRFPLEAQAA 332

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+ G   AL    + Y SPEAV   +  M  +  HA  AS++LA+E+G +
Sbjct: 333 EARGKRRIGLGVTGLADALIFCGLRYGSPEAVATTERWMSLLRRHAYRASIDLAREKGPF 392

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F    +  G    +SI  L E                +L++ +   G+RN+   +IAP
Sbjct: 393 PLFDAKPYLAG----ESIRELDE----------------DLREAIAEHGIRNALVTSIAP 432

Query: 769 TATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+     VS  ++P +   Y ++ +  D +   +  V++L  R      +  +LK  
Sbjct: 433 TGTISLFADNVSSGLEPVFSFTYDRTVLMPDGS-KKTEEVSDLAYR------LYRELKGP 485

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           D  + +          +HA +       ++++A   QK++D + S  +   E     +DF
Sbjct: 486 DAPLTD--------AFVHAQSLAPSDHVVMQAAV--QKYVDSSISKTINCPE----DIDF 531

Query: 888 -----IYRQAWLMGLK--TTY 901
                +YRQA+  G K  TTY
Sbjct: 532 EAFKSVYRQAYESGCKGCTTY 552


>gi|1710393|sp|P50643|RIR1_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|437736|emb|CAA50976.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525264|emb|CAA56775.1| ribonucleotid reductase, large subunit [Suid herpesvirus 1]
 gi|40253967|tpg|DAA02162.1| TPA_exp: large subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090509|prf||2019240A ribonucleotide reductase:SUBUNIT=large
          Length = 835

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 173/642 (26%), Positives = 295/642 (45%), Gaps = 59/642 (9%)

Query: 305 YFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKRAVE-FYNLLSSFHFMC 353
           Y   +   R E    FF+R+A          M L L  ++      + ++  L++   + 
Sbjct: 201 YLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDAYFRALATQAIVP 260

Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRGLG 411
           +TP +  +G     L+SC+L   +P        A+  E A +    GG+G        L 
Sbjct: 261 ATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLS------LQ 314

Query: 412 AHIHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-T 469
           +     +G  ++G++  LK  +    A+N   +R   VC Y+E WH DV   L++R    
Sbjct: 315 SFNRTPSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRGMLA 374

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            D+  R  ++ +  W PDLF +R  ++        WTLF  D  S L  L+G +F   YE
Sbjct: 375 ADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAREYE 433

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582
             ER     E    + ++ + +   ++T     G P++  KD CN        G  + +S
Sbjct: 434 RLERLGLGVESLPIQDMAFLIVRSAVMT-----GSPFLMMKDACNRHFHTDTRGAALATS 488

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ ++ I  + 
Sbjct: 489 NLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIGNYP 548

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
              + +     R++G+GL G  + +  L +  A P A  +     E + +  + ASVEL 
Sbjct: 549 TGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELC 608

Query: 703 QERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
            ERG   +  F+ S + +GV P D+        + +++    R  WD L+ R+   G+ N
Sbjct: 609 -ERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRIAEHGVYN 658

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWD 817
           +  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++   R+   
Sbjct: 659 AQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECAR 718

Query: 818 EAMISDLKYHDGSI-GNIERIP--DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              ++ L+    S+      +P    L K   TAFE D   LI+  + R  ++D +QS++
Sbjct: 719 RDAVARLERAQWSVAAAFGELPAGHPLAKFK-TAFEYDQELLIDMCADRAPFVDHSQSMS 777

Query: 875 LYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
           L+L EP+  KL       +  +A+ +GLKT  YY + R AT+
Sbjct: 778 LFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATN 819


>gi|313665033|ref|YP_004046904.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
 gi|312949963|gb|ADR24559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
          Length = 720

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 160/588 (27%), Positives = 268/588 (45%), Gaps = 73/588 (12%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L+K  GG+    T +R 
Sbjct: 157 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 216

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+   H D+   LD ++  
Sbjct: 217 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 276

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526
            D++ R   ++    IPD+  +    N    LFSP    D+   YGK   +  I  + YE
Sbjct: 277 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 333

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +    K +  ISA   +  +  + FE+G+P+I F+D  N R+     G +  SNLC+
Sbjct: 334 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 391

Query: 587 EITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI   S++ E +             CNLGS+N+     + +    + + +I  A+  LD 
Sbjct: 392 EIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 447

Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V    D+N   +I+K    NH   A+GLG M     L    I Y SPEAV+  +     +
Sbjct: 448 VSRNSDLNASPSIKKGNAENH---AVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTV 504

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743
           +++A  AS +LA+E   ++SF  S +  G +         D          EL  +   +
Sbjct: 505 AYNAFKASNKLAKEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 564

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +P    W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P    + V+       
Sbjct: 565 IPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 624

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V ++ +N              ++ Y+  ++G  E  PD +  I A A           
Sbjct: 625 VYVPAYQIN------------FDNMGYY--AMGTYELGPDPIINIAAAA----------- 659

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R
Sbjct: 660 ----QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRIR 703


>gi|240169544|ref|ZP_04748203.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           kansasii ATCC 12478]
          Length = 693

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 182/668 (27%), Positives = 301/668 (45%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + V++ LA  +T   ++ V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLAGGDTTLAEQLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDNPRIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSYFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPNFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  ++ ERG  +  F+ S +  G F       + E + E    L   
Sbjct: 475 IYFYTVLYHALRASNRISIERGTHFKGFERSKYASGEFFDKYTEQIWEPKTEKVRRLFAA 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
               +P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 535 ADIHIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 584 ----------IVSKVEIRK-------------EGKIGRVYYPAPYMTNDNLEYYQDAYEI 620

Query: 852 DPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+ +D  + ++++     AW  G+KT YY+R R   +
Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFMDTATTREVNKAQIYAWRKGIKTLYYIRLRQ-MA 679

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 680 LEGTEVEG 687


>gi|57790964|ref|YP_182368.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
 gi|5918980|gb|AAD56211.1|AF168792_12 ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 785

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 270/611 (44%), Gaps = 80/611 (13%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT------------TVPDDLYGIFGALQE 389
           F+  LSS   +  TP +   GT     +SCFL             ++P+++  I      
Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFLIDSSGRNTERRSMSLPEEVIPIM----- 249

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
                   GG+G        +     G      G + FLK  +    A N   KR   +C
Sbjct: 250 -----NNRGGIG--------ISLPCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLC 296

Query: 450 AYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEV 507
            Y E WH D  + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  + WTLF     
Sbjct: 297 VYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRG 355

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L +L+G+EFE  YE  ER+     + +  ++ +             TG P++ FKD  
Sbjct: 356 EHLSNLFGEEFEKEYERLERKMLEWPLSLSPRLCSDN------QKCSSTGTPFVVFKDAF 409

Query: 568 NIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---------- 615
           N       QH   +  SNLCTEI   + S+   VCNL SINL A   N +          
Sbjct: 410 NRHYFYNMQHR-ALKCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSF 468

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FDY+ L  T RTA    + +I +     ++A+  NH  R++G+G+ G  +A  +      
Sbjct: 469 FDYELLRETARTATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMT 528

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSI-GLLAEV 732
           S E  E  D   E ++      S  L  E G   +  ++ S +  G   ID         
Sbjct: 529 SVEGFEFNDTVFELLALETTGISCRLC-ELGLPPFDKYRESYYALGWLHIDGWPNTKLRY 587

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           ++E          WD L+ R+   G+ N   +A+ PTA+ + I  VS+   P + N++ K
Sbjct: 588 KNE----------WDSLRHRIDPSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSK 637

Query: 793 SNMSGDFTVVNSFL---VNELKQRDLWDEAMISDLKYHDGSI----GNIERIPDDLKKIH 845
            + +G+    +  L   ++EL       +A +++LK H  S+    G+       L K  
Sbjct: 638 ISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQ 697

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKTT 900
            TAFE+D   L+  ++RR  +ID +QS  LY+ E      S  ++  + + A+  GLKT 
Sbjct: 698 -TAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTA 756

Query: 901 -YYLRSRSATS 910
            YY + R  T+
Sbjct: 757 MYYCKVRKITN 767


>gi|126802153|ref|YP_068342.2| ribonucleotide reductase subunit 1 [Suid herpesvirus 1]
          Length = 790

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 173/642 (26%), Positives = 295/642 (45%), Gaps = 59/642 (9%)

Query: 305 YFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKRAVE-FYNLLSSFHFMC 353
           Y   +   R E    FF+R+A          M L L  ++      + ++  L++   + 
Sbjct: 156 YLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDAYFRALATQAIVP 215

Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRGLG 411
           +TP +  +G     L+SC+L   +P        A+  E A +    GG+G        L 
Sbjct: 216 ATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLS------LQ 269

Query: 412 AHIHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-T 469
           +     +G  ++G++  LK  +    A+N   +R   VC Y+E WH DV   L++R    
Sbjct: 270 SFNRTPSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRGMLA 329

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            D+  R  ++ +  W PDLF +R  ++        WTLF  D  S L  L+G +F   YE
Sbjct: 330 ADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAREYE 388

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582
             ER     E    + ++ + +   ++T     G P++  KD CN        G  + +S
Sbjct: 389 RLERLGLGVESLPIQDMAFLIVRSAVMT-----GSPFLMMKDACNRHFHTDTRGAALATS 443

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ ++ I  + 
Sbjct: 444 NLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIGNYP 503

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
              + +     R++G+GL G  + +  L +  A P A  +     E + +  + ASVEL 
Sbjct: 504 TGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELC 563

Query: 703 QERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
            ERG   +  F+ S + +GV P D+        + +++    R  WD L+ R+   G+ N
Sbjct: 564 -ERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRIAEHGVYN 613

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWD 817
           +  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++   R+   
Sbjct: 614 AQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECAR 673

Query: 818 EAMISDLKYHDGSI-GNIERIPDD--LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              ++ L+    S+      +P    L K   TAFE D   LI+  + R  ++D +QS++
Sbjct: 674 RDAVARLERAQWSVAAAFGELPAGHPLAKFK-TAFEYDQELLIDMCADRAPFVDHSQSMS 732

Query: 875 LYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATS 910
           L+L EP+  KL       +  +A+ +GLKT  YY + R AT+
Sbjct: 733 LFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATN 774


>gi|311068262|ref|YP_003973185.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
 gi|310868779|gb|ADP32254.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
          Length = 700

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 174/658 (26%), Positives = 294/658 (44%), Gaps = 92/658 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F  ++     Y+ Y L  N  +  +E  +     VA+  A  +TEK K   ++ 
Sbjct: 85  YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---DYV 141

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            L+ +  +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K  GG+  
Sbjct: 142 RLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +F
Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E ++  
Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y++  D   +K   KI+A  L  K+  +  E+G+P+I F+D  N      HV  V  S
Sbjct: 321 EMYDKFVDNPRVKK-EKINARKLLEKLAVLRSESGYPYIMFQDNVNKEHALNHVSKVKFS 379

Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S         EE  +     CNLGS+N+L     N  ++  +  T++ A  
Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEHTVKLATD 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V +  +       +++N   ++IGLG M     L    I Y SPEA + A+     
Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737
           ++F++I  S ELA+E+GA +  ++GS +  G +             + I  L E      
Sbjct: 495 VNFYSIQRSAELAKEKGATFEQYEGSSYATGEYFDKYVSNDFSPAYEKIAALFE-----G 549

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789
           M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+ P        +Y N 
Sbjct: 550 MHIPTIEDWKQLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                M G     N F   E                                      A+
Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ IDQ  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|218296963|ref|ZP_03497649.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
 gi|218242666|gb|EED09202.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
          Length = 560

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 172/583 (29%), Positives = 262/583 (44%), Gaps = 109/583 (18%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +F   ++  ++  +TP   N G +     SC+ T V DD   I  A+ E  M++K  GG 
Sbjct: 57  KFQRYMARGYYSLATPVWANYGLKRGLPISCYGTYVEDDTASILRAVAEVGMMSKQGGGT 116

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
                 +R  GA I   NG+S G   F  + +      NQG  R+G   AYL+  H D+E
Sbjct: 117 SVYLGALRPRGAPIR-DNGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHPDLE 175

Query: 461 EFLDLRKNTGDDRRRTHDMNTANW---IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           E+  ++       R   ++ +  W   IPD +M+ +   AG                   
Sbjct: 176 EWFRIQ-------REGSEIQSLFWGVSIPDRWMEEMV--AG------------------- 207

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QH 575
                       DR + +          W K+L   FE G P++ F+D  N   PQ  + 
Sbjct: 208 ------------DRAKRET---------WAKILKSRFEAGIPYLFFRDAANRGMPQVFRE 246

Query: 576 VGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           +G+ + +SNLCTEI L SS EE+ VC L S+NLL       +D  K    + T V  LD+
Sbjct: 247 LGLRIWASNLCTEIMLPSSPEESFVCCLSSLNLL------HYDEWKETDAVETLVIFLDS 300

Query: 635 VID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V+D           +E+A +    +RAIGLG++G+ S L    IP  S EA  +  E  +
Sbjct: 301 VLDDFIEKAEGIPYLERAVRFARRYRAIGLGVLGWHSYLQSRMIPLESLEAQYLNQEIFK 360

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I         E A+E         S W +   P D +  + E                 
Sbjct: 361 TIR--------ERAEE--------ASRWLRKRHPEDELSGVGE----------------- 387

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           LK+R      RN+  +AIAPT + + I G VS SI+P   N Y+K          N FL 
Sbjct: 388 LKER------RNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKAKVPFKNPFLE 441

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             L+Q+   +E +   +  H+GS+ +++ + D+ K +  T  EI  + L+  A+ RQ+++
Sbjct: 442 ELLRQKGKDEERVWRSILEHNGSVQHLDFLNDEEKAVFKTFAEISQLELVRQAAARQRYV 501

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           DQ QSLNL +  E   K ++ +Y +AW  GLK+ YY  S+S  
Sbjct: 502 DQGQSLNLVIHPEAPLKDVNELYLEAWRSGLKSLYYQWSQSVA 544


>gi|557567|gb|AAA64444.1| ribonucleotide reductase R1 subunit [Mycobacterium tuberculosis
           str. Erdman]
          Length = 723

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 183/668 (27%), Positives = 297/668 (44%), Gaps = 82/668 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 99  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 158

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 159 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 215

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  G  I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 216 VALLLTNIREHGGAIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 275

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 276 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 332

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 333 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 389

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 390 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 444

Query: 626 RTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V    +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 445 EVAIRALTAVRHQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 504

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E + +    L  +
Sbjct: 505 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 564

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 565 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 613

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 614 ----------IVSKVEVRK-------------EGKIGRVYYPAPYMTNDNLEYYEDAYEI 650

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   +
Sbjct: 651 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MA 709

Query: 911 VEKSTLKG 918
           +E + ++G
Sbjct: 710 LEGTEVEG 717


>gi|51246679|ref|YP_066563.1| ribonucleoside-diphosphate reductase [Desulfotalea psychrophila
           LSv54]
 gi|50877716|emb|CAG37556.1| probable ribonucleoside-diphosphate reductase [Desulfotalea
           psychrophila LSv54]
          Length = 785

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/563 (26%), Positives = 251/563 (44%), Gaps = 82/563 (14%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFHF 351
           +L  RY+L  + G+ +E  +A   RVA  +A ++   +           +F+ ++    F
Sbjct: 73  VLARRYYLKDDAGNSLEDWKALAHRVAEAVAPEDATGKNEVTGIKQLRDDFFTMIYQLDF 132

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++P L N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G  ++ +R   
Sbjct: 133 LPNSPCLMNAGTEIGQLSACFVLPVEDSMDGIFTAIRNGALVHKTGGGTGYSFSRIRACN 192

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T+G + G + F  V +     + QGGKR+GA    L   H D+  F+  +    +
Sbjct: 193 ASVKSTHGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDIMAFISAK----E 248

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D+ + ++ N +  I DLFM  +  +  + L  P                           
Sbjct: 249 DQDKFNNFNFSVAITDLFMAALEADKEYDLIEP-------------------------ST 283

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  +++AV ++ K++ + +  G P + F D  N  +    +G   ++N C E  L 
Sbjct: 284 GE--VMGQLNAVEVFAKIVDLAWHNGEPGVLFIDAANRDNTTPQLGDFEATNPCGEQWLL 341

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL     N++ DY +L   ++TA   LDNVID N   I +  +   
Sbjct: 342 PYES----CNLGSINLGNFVKNDEVDYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTL 397

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MG    L  L IPY S E   +A E M+FI       S +LA+E+GA+ ++
Sbjct: 398 KTRKIGLGIMGLHDLLIQLAIPYGSEEGRLLAAEVMQFIRDRCEEQSRKLAEEKGAFPAY 457

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
              +    ++P                                    RN+   +I PT T
Sbjct: 458 DAEI---NLYP----------------------------------ARRNAALTSIQPTGT 480

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           ++ I   +   +P +  + +K  M GD   +VN       +++  + + ++  +      
Sbjct: 481 VSMIADCASGCEPYFSIVMMKHVMDGDRLLMVNKHFEKIAREQGFYSDDLMVKVAESGTV 540

Query: 831 IGNIERIPDDLKKIHATAFEIDP 853
           +G+ E IP+  ++   TA +I P
Sbjct: 541 VGHAE-IPEKWQEAFRTAQDISP 562


>gi|15827932|ref|NP_302195.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae TN]
 gi|221230409|ref|YP_002503825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae Br4923]
 gi|13093485|emb|CAC30687.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae]
 gi|219933516|emb|CAR71829.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae Br4923]
          Length = 693

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 296/666 (44%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +T   ++ V
Sbjct: 69  DRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGDTGLAEKLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFS  +V  ++++   +  
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADIS 305

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++K+  + FE+G+P++ F+D  N  +P +  G +
Sbjct: 306 VT-EKYYEMLDDARIRK-TKIKAREFFQKLAELQFESGYPYVMFEDTVNRANPIE--GKI 361

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A T+  
Sbjct: 362 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTVEV 416

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +  
Sbjct: 417 AIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIY 476

Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741
              + FH + AS  +A ERG +   F+ S +  G F    I    E +     +L     
Sbjct: 477 FYTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAA 536

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            R+P    W  LK+ V   G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 537 IRIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 583

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                   +V++++ R              +G IG +      + +D  + +  A+EI  
Sbjct: 584 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLQYYQDAYEIGY 622

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 623 QKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 681

Query: 913 KSTLKG 918
            + ++G
Sbjct: 682 GTEVEG 687


>gi|18202755|sp|Q9CBQ0|RIR1_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
          Length = 721

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 179/666 (26%), Positives = 296/666 (44%), Gaps = 78/666 (11%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +T   ++ V
Sbjct: 97  DRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGDTGLAEKLV 156

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG
Sbjct: 157 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGG 213

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 214 VALLLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 273

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             FLD ++   D++ R   ++    IPD+  +   +N    LFS  +V  ++++   +  
Sbjct: 274 YRFLDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADIS 333

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y    D   I+   KI A   ++K+  + FE+G+P++ F+D  N  +P +  G +
Sbjct: 334 VT-EKYYEMLDDARIRK-TKIKAREFFQKLAELQFESGYPYVMFEDTVNRANPIE--GKI 389

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI   S+              +   CNLGS+N+         D    A T+  
Sbjct: 390 THSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTVEV 444

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +  
Sbjct: 445 AIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIY 504

Query: 687 MEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRT 741
              + FH + AS  +A ERG +   F+ S +  G F    I    E +     +L     
Sbjct: 505 FYTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAA 564

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            R+P    W  LK+ V   G+ N N  A+ PT +I+ I   + SI P             
Sbjct: 565 IRIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHP------------- 611

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDP 853
                   +V++++ R              +G IG +      + +D  + +  A+EI  
Sbjct: 612 --------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLQYYQDAYEIGY 650

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E
Sbjct: 651 QKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQ-MALE 709

Query: 913 KSTLKG 918
            + ++G
Sbjct: 710 GTEVEG 715


>gi|259502688|ref|ZP_05745590.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169333|gb|EEW53828.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 723

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 167/622 (26%), Positives = 278/622 (44%), Gaps = 80/622 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           RVAM         E+ A++  + +    +  +TPT  N G  R  +  SCF     DD+ 
Sbjct: 125 RVAMNALYLADGDEELAMDLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFAIQATDDMN 184

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I   +     L+K  GG+G + + +R  GA I    G + GV+P +K+  D+    NQ 
Sbjct: 185 TIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQL 244

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+GA   YL  +H D+ EFL  +K   D++ R   ++    +PD F + V   A   L
Sbjct: 245 GQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEAGADMYL 304

Query: 502 FSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           FSP    D+  +YGK F      + Y+      EI+  +K++A  L  ++  +  E+G+P
Sbjct: 305 FSP---YDVERIYGKPFSYVDITKEYDNLVANDEIRK-KKVNARDLEDEISKLQQESGYP 360

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI--------TLNSSSEET----AVCNLGSINL 607
           +I   D  N  +P    G +  SNLC+EI          +  S ET      CNLGS N+
Sbjct: 361 YIINIDTVNRANPID--GKIVMSNLCSEIAQVQVPSKVADDQSYETLGTDISCNLGSTNI 418

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                 N  D      ++R  +R L ++ D+ N   +   K+ N    ++GLG MG  S 
Sbjct: 419 A-----NMMDSPDFGRSVRAMMRGLTHISDVENLTVVPSIKRGNALAHSVGLGAMGLHSY 473

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV----F 721
           L   HI Y SP A+E        +++ ++ AS E+A+ER   + +F  S +  G     +
Sbjct: 474 LAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHNFAKSAYADGSYFDKY 533

Query: 722 PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                G  ++V   L        P  W  LK++V   G+ N   +A+AP  + + I   +
Sbjct: 534 TTKDWGPQSDVVKALFQGIFIPGPADWQALKEKVMQDGLYNEYRLAVAPNGSTSYINDST 593

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P                     + N +++R    E MI  + Y    + N      
Sbjct: 594 ASLTP---------------------ITNRVEER---QEKMIGKIYYPAPYLSN------ 623

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------K 883
           D    + +A++ID   +I++ +  Q+ +DQ+ SL L++    P+G              +
Sbjct: 624 DTMPYYQSAYDIDMRKVIDTYAAAQQHVDQSMSLTLFMRSTIPAGLYEWKDGRTNKMTTR 683

Query: 884 KLDFIYRQAWLMGLKTTYYLRS 905
            L+ +   A+  G+K+ YY+R+
Sbjct: 684 DLNILRHYAYQKGIKSIYYIRT 705


>gi|242026167|ref|XP_002433270.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212518899|gb|EEB20532.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 237

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 6/232 (2%)

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  
Sbjct: 4   DSIDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARY 63

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KR GA   YLE WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV QN
Sbjct: 64  VDQGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQN 123

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W L  P     L D +G+EF   Y +YE +         +K+ A +LW  ++    ET
Sbjct: 124 QEWCLMCPKICPGLSDCWGEEFNKLYLSYEEKG-----LYVKKVKAQSLWYAIIESQVET 178

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           G P++ +KD CN +S QQ++G +  SNLCTEI   SS EE  +      NLL
Sbjct: 179 GTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVKLVYYFFKNLL 230


>gi|269123321|ref|YP_003305898.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
 gi|268314647|gb|ACZ01021.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
          Length = 694

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 169/652 (25%), Positives = 302/652 (46%), Gaps = 74/652 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYN 344
           Y + F F+ Y+     Y  Y L ++ +  ++ + +  R+++  L L +  KEK A+++  
Sbjct: 79  YSKKFRFKSYMAASKFYQSYAL-MDDTGEKILERYEDRISIVALYLGQGNKEK-ALKYAK 136

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L +  +  +TPT  N+G  R  +L SCFL  + D+L GI  A +    L+   GG+  +
Sbjct: 137 MLINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLSGIGYAFESAMKLSSIGGGVAFN 196

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H D+ EFL
Sbjct: 197 ISKLRARGEAIKGVEGRASGVLPIMKILEDIFSYANQLGQRPGAGAVYLNVFHSDILEFL 256

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +K   D++ R   ++    I D FM+  + +     F P  V   +  Y  + ++  E
Sbjct: 257 DTKKINVDEKIRIKSLSIGVIISDKFMELASADLPCYTFYPHSVYLEYGKYLDDLDMN-E 315

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YE+     ++K  +KI+      K+     E+G+P++ FKD  N     + +G V  +N
Sbjct: 316 WYEKLVANPKVKK-KKINVREFLVKVAQTQKESGYPYLFFKDNANREHALKEIGDVKFTN 374

Query: 584 LCTEIT-------LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LCTEI        +N+  EE  +     CNLGS+N+     N       +   ++ A+  
Sbjct: 375 LCTEIMQLTEVSDINNYYEEDNIRRGISCNLGSVNIAKVMENKS-----IKEVVKNAIDS 429

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ N   +   KK+N    ++GLG M     L    I Y S EA++  +     +
Sbjct: 430 LTTVSDLTNISIVPSIKKANDELSSVGLGAMNLHGYLAKNMIQYESREALDFCNVFFMMM 489

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PI-DSIGLLAEVRDELAM 738
           +++++  S+E+A+ER  ++  F+ S +  G +          P+ D +  L E      +
Sbjct: 490 NYYSLERSMEIAKERSRSFLGFEKSEYANGKYFEKYITKEYMPVTDRVKELFE-----GI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +      W +LK+ V   G+ N+  MAIAP  + + I   + S+ P              
Sbjct: 545 HIPGVEEWKKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNATASVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R+  D      + Y          +  D    + +A+++D   +++
Sbjct: 591 -------IVDKVEVREYGDSTTFYPMPY----------LNYDNFFYYKSAYDMDQKNILK 633

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             S  Q+ +DQ  S  L+     + + L  +Y  A  +GLK+ YY R+R +T
Sbjct: 634 LISVIQRHVDQGISTILFTKSNDTTRDLSKLYILAHKLGLKSLYYTRTRKST 685


>gi|331703802|ref|YP_004400489.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|328802357|emb|CBW54511.1| Ribonucleoside diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 723

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 168/661 (25%), Positives = 294/661 (44%), Gaps = 69/661 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +  RV M        
Sbjct: 85  FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 143

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393
              +A      +    F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L
Sbjct: 144 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 203

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R  G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+ 
Sbjct: 204 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 263

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+   LD ++   D++ R   ++    IPD+  +    N    LFSP +V  +++ 
Sbjct: 264 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYNK 323

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I  + YE   +    K +  ISA   +  +  + FE+G+P+I F+D  N R+  
Sbjct: 324 PLSDISITEKYYEILENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAH 381

Query: 574 QHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC+EI   S++ E +             CNLGS+N+     + +    + 
Sbjct: 382 DKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EF 437

Query: 622 ASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +I  A+  LD V    D++   +I+K    NH   A+GLG M     L    I Y SP
Sbjct: 438 SDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNH---AVGLGAMNLHGFLATNKIMYDSP 494

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726
           EAV+  +     ++++A  AS +LAQE   ++SF  S +  G +                
Sbjct: 495 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPQT 554

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P  
Sbjct: 555 NRVKELFKDYDVQIPSQTDWIKLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 614

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + V+         V ++ +N              ++ Y+  ++G  E  PD +  I A
Sbjct: 615 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVA 660

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R 
Sbjct: 661 AA---------------QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRI 705

Query: 906 R 906
           R
Sbjct: 706 R 706


>gi|301321220|gb|ADK69863.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 720

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 161/588 (27%), Positives = 271/588 (46%), Gaps = 73/588 (12%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L+K  GG+    T +R 
Sbjct: 157 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 216

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+   H D+   LD ++  
Sbjct: 217 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 276

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526
            D++ R   ++    IPD+  +    N    LFSP    D+   YGK   +  I  + YE
Sbjct: 277 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 333

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +    K +  ISA   +  +  + FE+G+P+I F+D  N R+     G +  SNLC+
Sbjct: 334 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 391

Query: 587 EIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI  ++++SE           E   CNLGS+N+     + +    + + +I  A+  LD 
Sbjct: 392 EIVQVSTASEYNSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 447

Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V    D++   +I+K    NH   A+GLG M     L +  I Y SPEAV+  +     +
Sbjct: 448 VSRNSDLSASPSIQKGNALNH---AVGLGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTV 504

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743
           +++A  AS +LAQE   ++SF  S +  G +         D          EL  +   +
Sbjct: 505 AYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 564

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +P    W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P    + V+       
Sbjct: 565 IPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 624

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V ++ +N              ++ Y+  ++G  E  PD +  I A A           
Sbjct: 625 VYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVAAA----------- 659

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R
Sbjct: 660 ----QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRIR 703


>gi|328464292|gb|EGF35722.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus MTCC 5463]
          Length = 505

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 146/516 (28%), Positives = 246/516 (47%), Gaps = 73/516 (14%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++
Sbjct: 5   SSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLS 64

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KV 536
               IPD+  +   +N    LFSP    D+   YGK   +  I  E Y+   +   I K 
Sbjct: 65  LGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNLLNNPRIKKT 120

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNS 592
           F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI    T ++
Sbjct: 121 F--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPST 178

Query: 593 SSEETA--------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI---DINCH 641
            +E+ +         CNLGS+N+ A   +     DKL   +  +V+ L+ V    D++C 
Sbjct: 179 YNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCA 234

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                KK N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +L
Sbjct: 235 P--SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKL 292

Query: 702 AQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           A++ GA+  FK S +          D+ V P      + E+  +  +   ++  W+EL  
Sbjct: 293 AEKYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIVAKYKLVIPTKEDWEELIT 350

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ +N+  
Sbjct: 351 KIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK-- 408

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                      D+ +     A+E+ P  +I+  +  QK++DQ+ 
Sbjct: 409 ---------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSI 441

Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 442 SLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVR 477


>gi|331701738|ref|YP_004398697.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129081|gb|AEB73634.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 721

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 178/711 (25%), Positives = 316/711 (44%), Gaps = 109/711 (15%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-----------FEYLGLQ-------- 299
           +++E V+  L+    +     YL  +  YE DF            ++YL  Q        
Sbjct: 38  FLKENVQPNLMKFDSLSDRFDYLIKNNYYEADFIHKYQLSFVEKLYQYLNDQDFHFKSFM 97

Query: 300 ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
                Y +Y L  N + + + ++F  RVA          E+ A++  + +    +  +TP
Sbjct: 98  AAYKFYAQYALKTNDNDLYL-ESFLDRVAANALFFADGDEQLAMDLADEIVHQRYQPATP 156

Query: 357 TLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +  N+G  +  +  SCFL    DD+  I   +     L++  GG+G + + +R  GA I 
Sbjct: 157 SFLNAGRENRGEFVSCFLIQTTDDMNTIGRTINSALQLSRIGGGVGINLSNLREAGAPIK 216

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
              G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K   D++ R
Sbjct: 217 HIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIR 276

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGE 533
              ++    +PD F + +  +A   LFSP    D+   YG  F      + Y+      +
Sbjct: 277 LKTLSLGVTVPDKFYQLIKADADMYLFSP---YDVEREYGVPFSYVDITKEYDNLVANDK 333

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----- 588
           I   +KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI     
Sbjct: 334 ISK-KKIKARDLETEISKLQQESGYPYIINIDTANRSNPI--AGRIVMSNLCSEILQVQT 390

Query: 589 --TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640
             T+++      +     CNLGS N+     NN    D    ++ + VR L  V D  N 
Sbjct: 391 PSTVDNQQHYIKMGKDISCNLGSTNI-----NNMIAGDDFGHSVESMVRALTFVTDHSNI 445

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +K N    +IGLG MG  S L   H+ Y SPE++E        +++ ++ AS +
Sbjct: 446 DVVPSIQKGNKESHSIGLGGMGLHSFLAKHHMYYGSPESIEFTSVYFMLLNYWSLVASNK 505

Query: 701 LAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +A+ER   + +F+      GS +D+   G F   S  + A  +D+      ++  W+ LK
Sbjct: 506 IAKERKETFVNFENSKYADGSYFDKYLDGSFAPKSAEVKALFKDDWI---PTKEDWENLK 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + V   G+ + N +A+AP  +I+ I   + S+ P                     ++N +
Sbjct: 563 ESVMKDGLYHQNRLAVAPNGSISYINDTTASLHP---------------------IINRI 601

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++R    E+ I  + Y    + N      D    + +A+++D   +I+  +  Q+ IDQ 
Sbjct: 602 EER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAAQQHIDQG 652

Query: 871 QSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +L L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAYKKGVKSIYYIRT 703


>gi|313140806|ref|ZP_07802999.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133316|gb|EFR50933.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
          Length = 731

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 190/703 (27%), Positives = 301/703 (42%), Gaps = 92/703 (13%)

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           Q   P  F RY  E +     H     F+        K+   +A     L+    + +L 
Sbjct: 82  QYYAPAVFERYSPEFLDGFYAHAESSGFEFGTFLGAFKFYTSYA-----LKTFDGKLYLE 136

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367
                 + PQ     VA+ LA      E+RAVE+ + + S  F  +TPT  N G  +  +
Sbjct: 137 ------DFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAFQPATPTFLNLGKAQRGE 186

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D +  I   +     L+K  GG+    + +R LGA I     +S GVIP 
Sbjct: 187 AVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPV 246

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD
Sbjct: 247 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPD 306

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVAL 545
           +  +   + A   LFSP    D   +YGK F +I+  E+Y+       I+    I A   
Sbjct: 307 VTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEMVADDRIRK-TYIDAREF 362

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV-- 599
           +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI      +S +E+     
Sbjct: 363 FTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEILQVQEASSYNEDLTYSH 420

Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
                 CNLGS+N+             LA T+ TA+R L +V +      +   +++N  
Sbjct: 421 VGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVSEHTRIDAVPSIRRANDE 474

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             AIGLG M     L    I Y S EA++  D     +++HA  AS  LA E G A+  F
Sbjct: 475 GHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAYRASHTLAVEHGTAFRGF 534

Query: 712 ----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIG 757
                     +G+ +D+      S+    E+   L       +P    W EL+  +   G
Sbjct: 535 ADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAIPTEADWAELRDDILRDG 594

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLW 816
           + N N  A+ PT +I+ I   + SI P    + + K    G      +++ NE       
Sbjct: 595 IYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRVYYPAAYMTNE------- 647

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           N+E   D        A+EI    ++++ +   + +DQ  SL L+
Sbjct: 648 ----------------NLEYYKD--------AYEIGWKAIVDTYAEATQHVDQGLSLTLF 683

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 684 FPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|50313262|ref|YP_053066.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 1]
 gi|132607|sp|P28846|RIR1_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|42795148|gb|AAS45905.1| large subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617005|gb|AAT67278.1| ribonucleotide reductase RR1 [Equid herpesvirus 1]
          Length = 790

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 182/669 (27%), Positives = 295/669 (44%), Gaps = 80/669 (11%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ  + Y+  +L  + G RIE    FF+R+A        E+   A             
Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYI 191

Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              ++  L+    + +TP +   G     L+SC+L    V D    +   ++E   +   
Sbjct: 192 FKAYFTALAGQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCN 251

Query: 397 SGGLGNDW----TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
            GG+G       TP +          G S+GV+  LK+ +   +A+N  G+R   VC Y 
Sbjct: 252 RGGIGLSLQRFNTPPK---------EGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYF 302

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPD 505
           E WH D+   L++R     D+  R  ++    W PDLF  R  +         WTLF  D
Sbjct: 303 EPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLFD-D 361

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             S L  +YGKE          Q   G   +  +  A  + R  +     TG P++ FKD
Sbjct: 362 TASHLCHMYGKE-FEEEYERLEQCGFGVDSIPIQDMAFIIVRSAVM----TGSPFLMFKD 416

Query: 566 PCN--IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LA----HFAN-NQ 615
            CN       +  G +  SNLCTEI  ++   +  VCNL SINL   LA    H A    
Sbjct: 417 ACNKHYHFDLRRKGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPY 476

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+  L     TA   +++++    +   K+++    +R++GLG+ G  +A  +L +  A
Sbjct: 477 FDFAALGRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMA 536

Query: 676 SPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           SPEA ++  +  E +  +++ AS  L +     +  F+ S +  G  P DS         
Sbjct: 537 SPEARQLNKQIAERLLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYP------- 589

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +   +R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K  
Sbjct: 590 --GVTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVT 647

Query: 795 MSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHD----GSIGNIERIPDDLKKIHAT 847
            +G+    N  L+  ++    R+      +S L+       G+ G++  +   L K   T
Sbjct: 648 ATGEVLRPNLLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLP-VGHPLSKFK-T 705

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TY 901
           AFE D   LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  Y
Sbjct: 706 AFEYDQRTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMY 765

Query: 902 YLRSRSATS 910
           Y + + AT+
Sbjct: 766 YCKIKKATN 774


>gi|321315507|ref|YP_004207794.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
 gi|291484286|dbj|BAI85361.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021781|gb|ADV96767.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
          Length = 700

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 293/658 (44%), Gaps = 92/658 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F  ++     Y+ Y L  N  +  +E  +     VA+  A  +TEK K   E+ 
Sbjct: 85  YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---EYV 141

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           NL+ +  +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K  GG+  
Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +F
Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E ++  
Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y++  D   +K   KI+   L  K+  +  E+G+P+I F+D  N      H+  V  S
Sbjct: 321 EMYDKFVDNPRVKK-EKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFS 379

Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S         EE  +     CNLGS+N+L     N  ++  +  T++ A  
Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATD 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V +  +       +++N   ++IGLG M     L    I Y SPEA + A+     
Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737
           ++F++I  S E+A+E+G  +  ++GS +  G +             + I  L E      
Sbjct: 495 VNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----G 549

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789
           M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+ P        +Y N 
Sbjct: 550 MHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                M G     N F   E                                      A+
Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ IDQ  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|16078801|ref|NP_389620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309617|ref|ZP_03591464.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313940|ref|ZP_03595745.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318863|ref|ZP_03600157.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323135|ref|ZP_03604429.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|1710384|sp|P50620|RIR1_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1154632|emb|CAA92810.1| NrdE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634122|emb|CAB13622.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 700

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 293/658 (44%), Gaps = 92/658 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F  ++     Y+ Y L  N  +  +E  +     VA+  A  +TEK K   E+ 
Sbjct: 85  YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDTEKAK---EYV 141

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           NL+ +  +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K  GG+  
Sbjct: 142 NLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +F
Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E ++  
Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN- 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y++  D   +K   KI+   L  K+  +  E+G+P+I F+D  N      H+  V  S
Sbjct: 321 EMYDKFVDNPRVKK-EKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFS 379

Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S         EE  +     CNLGS+N+L     N  ++  +  T++ A  
Sbjct: 380 NLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATD 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V +  +       +++N   ++IGLG M     L    I Y SPEA + A+     
Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737
           ++F++I  S E+A+E+G  +  ++GS +  G +             + I  L E      
Sbjct: 495 VNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----G 549

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789
           M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+ P        +Y N 
Sbjct: 550 MHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                M G     N F   E                                      A+
Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ IDQ  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|157955347|gb|ABW06054.1| NrdE [Bacillus thuringiensis serovar alesti]
          Length = 694

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 169/649 (26%), Positives = 303/649 (46%), Gaps = 66/649 (10%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+   GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I   S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIADESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 485 FFMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P              
Sbjct: 545 HIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP-------------- 590

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V++++ R   +      + Y          +  D    + ++++++   LI+
Sbjct: 591 -------IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLID 633

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 634 LIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 682


>gi|224283651|ref|ZP_03646973.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 698

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 190/703 (27%), Positives = 301/703 (42%), Gaps = 92/703 (13%)

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           Q   P  F RY  E +     H     F+        K+   +A     L+    + +L 
Sbjct: 49  QYYAPAVFERYSPEFLDGFYAHAESSGFEFGTFLGAFKFYTSYA-----LKTFDGKLYLE 103

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQ 367
                 + PQ     VA+ LA      E+RAVE+ + + S  F  +TPT  N G  +  +
Sbjct: 104 ------DFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAFQPATPTFLNLGKAQRGE 153

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D +  I   +     L+K  GG+    + +R LGA I     +S GVIP 
Sbjct: 154 AVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPV 213

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD
Sbjct: 214 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPD 273

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVAL 545
           +  +   + A   LFSP    D   +YGK F +I+  E+Y+       I+    I A   
Sbjct: 274 VTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEMVADDRIRK-TYIDAREF 329

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI----TLNSSSEETAV-- 599
           +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI      +S +E+     
Sbjct: 330 FTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEILQVQEASSYNEDLTYSH 387

Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
                 CNLGS+N+             LA T+ TA+R L +V +      +   +++N  
Sbjct: 388 VGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVSEHTRIDAVPSIRRANDE 441

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             AIGLG M     L    I Y S EA++  D     +++HA  AS  LA E G A+  F
Sbjct: 442 GHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAYRASHTLAVEHGTAFRGF 501

Query: 712 ----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIG 757
                     +G+ +D+      S+    E+   L       +P    W EL+  +   G
Sbjct: 502 ADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAIPTEADWAELRDDILRDG 561

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLW 816
           + N N  A+ PT +I+ I   + SI P    + + K    G      +++ NE       
Sbjct: 562 IYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRVYYPAAYMTNE------- 614

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           N+E   D        A+EI    ++++ +   + +DQ  SL L+
Sbjct: 615 ----------------NLEYYKD--------AYEIGWKAIVDTYAEATQHVDQGLSLTLF 650

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 651 FPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 692


>gi|310288087|ref|YP_003939346.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
 gi|309252024|gb|ADO53772.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
          Length = 731

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     ++   + PQ     VA+ LA      E+RAVE+ + + S  F
Sbjct: 114 FLGAFKFYTSYALKTFDGKLYLEDFPQRC-AAVALELA---AGSEQRAVEYLDEMLSGAF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   + A   LFSP    D   +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+    I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 347 VADDRIRK-TYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403

Query: 589 ----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 +S +E+           CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVS 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            AS  LA E G A+  F          +G+ +D+      S+    E+   L       +
Sbjct: 518 RASHALAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ NE                       N+E   D        A+EI    ++++
Sbjct: 638 YYPAAYMTNE-----------------------NLEYYKD--------AYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|311064960|ref|YP_003971686.1| ribonucleoside-diphosphate reductase subunit alpha NrdE
           [Bifidobacterium bifidum PRL2010]
 gi|310867280|gb|ADP36649.1| NrdE Ribonucleoside-diphosphate reductase alpha chain
           [Bifidobacterium bifidum PRL2010]
          Length = 731

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 290/660 (43%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     ++   + PQ     VA+ LA      E+RAVE+ + + S  F
Sbjct: 114 FLGAFKFYTSYALKTFDGKLYLEDFPQRC-AAVALELA---AGNEQRAVEYLDEMLSGAF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   + A   LFSP    D   +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+    I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 347 VADDRIRK-TYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403

Query: 589 ----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 +S +E+           CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTSVS 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            AS  LA E G A+  F          +G+ +D+      S+    E+   L       +
Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577

Query: 745 P----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDF 799
           P    W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + + K    G  
Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ NE                       N+E   D        A+EI    ++++
Sbjct: 638 YYPAAYMTNE-----------------------NLEYYKD--------AYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|164688727|ref|ZP_02212755.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
 gi|164602203|gb|EDQ95668.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
          Length = 698

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 181/662 (27%), Positives = 293/662 (44%), Gaps = 80/662 (12%)

Query: 277 DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKET 333
           D++Y   D    ++F F+ Y+     Y  Y L  N     +E  +   + VA+ L   E 
Sbjct: 73  DVIY---DFIRAKNFKFQSYMSASKFYQNYALKSNDGEEILENYEDKVLIVALTLGNGEP 129

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           +  K   E    L +  F  +TPT  N+G  R  ++ SCFL  V D   GI  A+     
Sbjct: 130 KLAKDIAE---KLINQEFQPATPTFLNAGRARGGKMVSCFLVNVEDSCEGISYAVSSANH 186

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+  + T +R  G  I G  G + GV+   K+   +    NQ G R+GA   YL
Sbjct: 187 LSKIGGGVALNLTRLRASGESIKGIKGAAGGVMGVAKLLEQSFSYFNQMGARQGAGAVYL 246

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D E  LD +K   D++ R   ++    IPD FM+   +N     F P  +   + 
Sbjct: 247 NVLHPDFETLLDSKKINADEKIRLTTLSIGAIIPDKFMELAEKNEKCYAFYPHSIYQKYG 306

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           ++    ++  E Y++ A+  EI+  ++I+   L  ++     E+G+P++ F D  N +  
Sbjct: 307 VHLDGIKMD-EWYDKLANDDEIEK-KEINPRELLTRIAQTQQESGYPYVVFIDSANEQHT 364

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDK 620
            + VG++  SNLC EI    +  +               CNLGS+N+      N  D   
Sbjct: 365 LKDVGMIKMSNLCCEIFQYQTPSDIKGYGQVSDWGQDISCNLGSLNIA-----NVMDNKD 419

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +  TI  A+R L  V D  N   +   KK N +  +IGLG M     L    I Y S E 
Sbjct: 420 IEKTIDVAIRALTYVSDNTNIEEVPTIKKGNDSSHSIGLGAMNLHGYLVREDIIYTSKEG 479

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-- 736
            E AD     + ++AI  S+ +A E+G  ++ F+ S + +G  P   +      +D L  
Sbjct: 480 REFADVFFAMMRYYAIKTSMNIAIEKGETFNGFEKSEYAKG--PESELFKKYCTKDFLPT 537

Query: 737 ---------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                     +N  ++  W EL ++VK  G+ N+   AIAPT +I+ +   + S+ P  +
Sbjct: 538 SEKVSKLFEGINIPTKEDWTELLQQVKNNGIYNAYLTAIAPTQSISYVQNSTSSVMPITE 597

Query: 788 NLYVKSNMSGDFTVVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            + V++   GD T +    FL NE             ++ Y+                  
Sbjct: 598 QIEVRT--YGDSTTIYPMPFLTNE-------------NMLYYQ----------------- 625

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +A+ ID + LI+  +  Q  IDQ  S  L++ D+ + + +   Y  A   GLK+ YY R
Sbjct: 626 -SAYRIDMLDLIDMVAIIQGHIDQGISTTLFVTDDKTTRDIARYYIYAHKKGLKSLYYTR 684

Query: 905 SR 906
           ++
Sbjct: 685 TK 686


>gi|42561372|ref|NP_975823.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492870|emb|CAE77465.1| ribonucleoside-diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
          Length = 723

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/588 (27%), Positives = 271/588 (46%), Gaps = 73/588 (12%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L+K  GG+    T +R 
Sbjct: 160 FQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRE 219

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+   H D+   LD ++  
Sbjct: 220 TGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKREN 279

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526
            D++ R   ++    IPD+  +    N    LFSP    D+   YGK   +  I  + YE
Sbjct: 280 ADEKIRIKSLSLGLVIPDITFELARDNKDMALFSP---YDVQKTYGKPLSDISITEKYYE 336

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +    K +  ISA   +  +  + FE+G+P+I F+D  N R+     G +  SNLC+
Sbjct: 337 MLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCS 394

Query: 587 EIT-LNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI  ++++SE           E   CNLGS+N+     + +    + + +I  A+  LD 
Sbjct: 395 EIVQVSTASEYNSDLSFIKTGEDICCNLGSLNIDKMMKSGK----EFSDSIYNAISALDI 450

Query: 635 V---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V    D++   +I+K    NH   A+GLG M     L +  I Y SPEAV+  +     +
Sbjct: 451 VSRNSDLSASPSIQKGNALNH---AVGLGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTV 507

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF-------PIDSIGLLAEVRDELAMNRTSR 743
           +++A  AS +LAQE   ++SF  S +  G +         D          EL  +   +
Sbjct: 508 AYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQ 567

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +P    W +L + +K  G+ NS+ MA+AP+ +I+ +   + S+ P    + V+       
Sbjct: 568 IPSQADWIQLVEEIKKTGLANSHLMAVAPSGSISYLSSCTPSLQPVVSTVEVRKEGKLGR 627

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V ++ +N              ++ Y+  ++G  E  PD +  I A A           
Sbjct: 628 VYVPAYQIN------------FDNMGYY--AMGAYELGPDPIINIVAAA----------- 662

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R
Sbjct: 663 ----QQHVDQAISLTLFMTDKATTRDLNKAYVNAFKQGCSSIYYVRIR 706


>gi|228475303|ref|ZP_04060027.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
 gi|228270679|gb|EEK12093.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
          Length = 701

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 180/666 (27%), Positives = 304/666 (45%), Gaps = 75/666 (11%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEK 335
           +++  A  + +E  FA  Y+     Y  Y L  N  + +  + +   VA+  L L +  K
Sbjct: 80  EIIEFAKSINFE--FA-SYMSASKFYKDYALKTN-DKSKYLEDYNQHVAIVALYLADGNK 135

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E +A +F   +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+
Sbjct: 136 E-QAKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLS 194

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  
Sbjct: 195 KIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNI 254

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + + 
Sbjct: 255 FHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVT 314

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIR 570
             + +I     E  A+   +K  +K  A    R+ML M+ +T    G+P++ FKD  N  
Sbjct: 315 LDDIDIEKYYDELVANPNVLK--KKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKV 368

Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618
               ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  + 
Sbjct: 369 HANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMET 423

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            K   ++ T +  L  V D  N       KK+N+   ++GLG+M     L    I Y S 
Sbjct: 424 GKFRDSVHTGMDALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESE 483

Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAE 731
           EA + A+     +++++I  S+E+A+ERG AY  F  S +  G +       + +    +
Sbjct: 484 EAKDFANIFFMMMNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYKSQEFVPQFEK 543

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V++  A M   +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P      
Sbjct: 544 VKELFANMQIPTSEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMP------ 597

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                          +V+++++R   +      + +          +  +    + +AF 
Sbjct: 598 ---------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFN 632

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   
Sbjct: 633 TDQMKLIDLISTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LL 691

Query: 910 SVEKST 915
           SVE+ T
Sbjct: 692 SVEECT 697


>gi|125745091|ref|YP_001033968.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 2]
 gi|327488428|sp|Q77MS1|RIR1_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|7673150|gb|AAF66774.1|AF147806_38 ribonucleotide reductase large subunit [Gallid herpesvirus 2]
 gi|10180744|gb|AAG14232.1|AF243438_47 UL39 ribonucleotide reductase large subunit-like protein [Gallid
           herpesvirus 2]
 gi|148806368|gb|ABR13124.1| UL39 [Gallid herpesvirus 2]
 gi|194346459|gb|ACF49641.1| UL39 [synthetic construct]
 gi|194750452|gb|ACF94929.1| UL39 [Gallid herpesvirus 2]
 gi|237626302|gb|ACR02825.1| UL39 [synthetic construct]
          Length = 822

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339
           LGLQ  + Y+ Y + +   + E    FF+R+A   A + + K+                 
Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398
             F+  L++  F+ STP +   G      +SC+L     ++      A+ E+ +    + 
Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G         G+G  +   NGK  G++  +KV +   +A N    R   +C YLE WH D
Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L++R     ++ RR  ++  A W  DL  KR        +N  WTLF     S L 
Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568
            L+ +EFE  YE  E +           ++++ +   M  ++     TG P+I FKD CN
Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   + +    VC+L SINL         N QFD+D L  
Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   ++ +++ +    EK+      +R++G+G+ GF +A   + +      A  + 
Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739
               EF+   A++ S E   ERG   ++ F  S + +G    D      LA V +     
Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+ 
Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682

Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851
              N  L+ EL+   L +E    A I+ L+  + +I    GN       LK  + TAF+ 
Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905
           D   LI+  S R  ++DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + 
Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800

Query: 906 RSATS 910
           R AT+
Sbjct: 801 RKATN 805


>gi|197121783|ref|YP_002133734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
 gi|196171632|gb|ACG72605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 595

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 171/614 (27%), Positives = 267/614 (43%), Gaps = 76/614 (12%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCS 354
           L +L  RY L    G  IE P A F RVA  +A  E    +   A  F   +++   + +
Sbjct: 9   LHVLERRYLLRDEAGQVIETPGAMFRRVAQAVAAAEAPAARSAWAERFEARMAALELLPN 68

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R  G  +
Sbjct: 69  SPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVV 128

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  G    
Sbjct: 129 KTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLGADHPDVLEFVDAKRAAG---- 184

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +   PD       +   W L  P                          RG  
Sbjct: 185 -LENFNISVAAPDALFHAAARGGRWALRHP--------------------------RGG- 216

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V R++ A  L  ++    + +G P + F D     +P   +G   + N C E  L    
Sbjct: 217 AVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE 276

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  + +  +R
Sbjct: 277 ----ACTLGSVNLARFERAGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEISRRNR 332

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+  F  S
Sbjct: 333 KIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS 392

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                  P  + G                      + R      RN+    IAPT T+A 
Sbjct: 393 A------PAGAGG----------------------RPR------RNATVTTIAPTGTLAI 418

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G S  I+P +   YV+  +  D  +           R    EA +  ++   G    +
Sbjct: 419 IAGCSSGIEPLFALTYVRHALD-DAALPEEHPALGRALRAAGAEAALPAVRAA-GRARGV 476

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
             +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S + +   YR A+
Sbjct: 477 AGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVAGAYRLAF 536

Query: 894 LMGLKTTYYLRSRS 907
            +G K     R  S
Sbjct: 537 ELGCKGITVYRDGS 550


>gi|221632943|ref|YP_002522166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
 gi|221155926|gb|ACM05053.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
          Length = 589

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/546 (27%), Positives = 246/546 (45%), Gaps = 80/546 (14%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A +FY L+++  F+ +TP L N+GT+  QL +CF+  VPD L GIFGA+++ A + +  G
Sbjct: 58  AEKFYELMTTLRFLPNTPALINAGTQLGQLFACFVIPVPDSLDGIFGAVRDAAKIQQTGG 117

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R  G  +  T   S G + F+++ +  +  +     R GA  A L   H D
Sbjct: 118 GTGFSFSHLRPRGDLVRSTRRPSSGAVSFIRIFDVASDVIATESVRGGANMAVLRCDHPD 177

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EF+D ++N     R     N +  + D F++   +     L +P          G  F
Sbjct: 178 VREFIDAKRNPALFSR----FNFSVLVTDDFLRAAIERREIALINPRT--------GLPF 225

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                    QA+ GE           L+  M+   +E G P + F D     +    +G 
Sbjct: 226 A--------QANAGE-----------LFDAMVDAAWEVGDPGLLFYDRIQRDNAVPALGP 266

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDN 634
           + ++N C E+ L+        C LGS+NL A           D   L  + R A+R LDN
Sbjct: 267 LEATNPCGEVPLHPWE----ACVLGSLNLRAFIVERGDRAFLDEAGLQESARLALRFLDN 322

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +++++ +   + +     +R +GLG+MGF   L  L IPY S E+V +AD  M  +   A
Sbjct: 323 MVEVSRYPKVEIETICRANRKVGLGIMGFADLLLALRIPYGSDESVAVADRVMGLVQAAA 382

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           + AS  LA+ERG + +F  S +                    A     R           
Sbjct: 383 VEASRRLAEERGPFPNFPISRY-------------------AARGEPPR----------- 412

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV---NSFLVNELK 811
               RN+    +APT +I+ I G S  I+P Y   Y      G+F  +   +  L+ EL 
Sbjct: 413 ----RNATVTTVAPTGSISIIAGCSSGIEPLYALAY---RHVGEFVGIVEPHPLLLRELS 465

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +   +D A++ +++   G IG+   +P++L+++   A EI P   I   +  Q+ ++ A 
Sbjct: 466 RIGKYDPALLHEIEV-TGRIGHRTDLPEELRRLFRVATEISPEEHIRVQAAVQRHVENAV 524

Query: 872 SLNLYL 877
           S  + L
Sbjct: 525 SKTINL 530


>gi|296330953|ref|ZP_06873428.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674471|ref|YP_003866143.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151958|gb|EFG92832.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412715|gb|ADM37834.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 700

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 177/695 (25%), Positives = 303/695 (43%), Gaps = 101/695 (14%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           E Q    E+   Y  E +KA         F      +  K+  D+A +    + + +RY 
Sbjct: 60  ENQYYEEEFLSLYSFEDIKAVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERY- 118

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRH 365
                 RI +       VA+  A  +TEK K   E+ NL+ +  +  STPT  N+G  R 
Sbjct: 119 ----EDRISI-------VALFFANGDTEKAK---EYVNLMINQEYQPSTPTFLNAGRKRR 164

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+
Sbjct: 165 GELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVV 224

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
             +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    I
Sbjct: 225 GVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVI 284

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD F++   ++    +F P  +   +  +  E ++  E Y++  D   +K   KI+   L
Sbjct: 285 PDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMN-EMYDKFVDNPRVKK-EKINPRKL 342

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------SEE 596
             K+  +  E+G+P+I F+D  N      H+  V  SNLC+E+   S           +E
Sbjct: 343 LEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDVEDE 402

Query: 597 TAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
             +   CNLGS+N+L     N  ++  +  T++ A   L +V +  +       +++N  
Sbjct: 403 IGLDISCNLGSLNIL-----NVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKA 457

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
            ++IGLG M     L    I Y SPEA + A+     ++F++I  S E+A+E+G  +  +
Sbjct: 458 MKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQY 517

Query: 712 KGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +GS +  G +             + I  L E      M+  +   W +LK  V   GM +
Sbjct: 518 EGSTYATGEYFDKYVSTDFSPKYEKIANLFE-----GMHIPTTEDWKQLKAFVAEHGMYH 572

Query: 761 SNCMAIAPTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           S  + IAPT +I+ +   + S+ P        +Y N      M G     N F   E   
Sbjct: 573 SYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYPMPG-LASNNWFFYKE--- 628

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                              A+++D   +++  +  Q+ +DQ  S
Sbjct: 629 -----------------------------------AYDMDMFKVVDMIATIQQHVDQGIS 653

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 654 FTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|19881199|gb|AAM00816.1|AF485080_1 large subunit ribonucleotide reductase [Staphylococcus phage Twort]
          Length = 705

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 162/586 (27%), Positives = 265/586 (45%), Gaps = 65/586 (11%)

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA-KYSGGLGNDWTPVRGLG 411
           +TP   NSG  +  +LSSC+L  V DD       + ++   A K +GG   D T +R  G
Sbjct: 152 ATPVYLNSGLGKRGELSSCYLFIVDDDTIESINFITDSVRQASKNAGGCAVDLTRLRPRG 211

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             ++G    S+GVIPF K    +    NQGGKR+G+   YL  +H D+ EF   +K    
Sbjct: 212 TEVNGVPNASKGVIPFAKNIEQSVSYFNQGGKREGSAVCYLNIFHPDIHEFSSSKKINAS 271

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQA 529
           D+ R   ++    IP+ FM+ + ++  +  F+  +V   +     E  ++  Y+ +    
Sbjct: 272 DKVRLDTLSIGVTIPNKFMELLKEDKYYYTFNVYDVKQKYGFTLNEINMSEYYDIFVNDD 331

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           D  + K + +     + R  L    E+G+P++ + D  N   P + +G V  SNLC E+T
Sbjct: 332 DIRKEKYYTRDIMTDIARTQL----ESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVT 387

Query: 590 L--------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                          N +     VC LGS+NL+     N  +   L  ++ + +R L  V
Sbjct: 388 QLQEVSDIFPYLQSHNDTIGNDVVCTLGSLNLV-----NVVEKGLLKESVDSGIRSLSKV 442

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ N   +   +K+N   RAIGLG M +   L    + Y S E+++IA+     I +++
Sbjct: 443 TDLMNVPFLPSVQKANDELRAIGLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYS 502

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PWD 747
           I +S+ELA+E G  +  FK S +  G      I    E R + A     ++       W+
Sbjct: 503 IKSSMELAKETGKVFKGFKESEYYTGEVFSSYIQKSHEPRTKKAKKVLEKVYIPTEEDWN 562

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L K VK  GM N     +APT +I+ +   + SI P    +  +   + D  +   F+ 
Sbjct: 563 SLSKDVKEYGMYNGYLNNLAPTQSISYVQNATSSIMPVPSPIENRRYGNMDTYIPMPFM- 621

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                      + I+   Y                    TA+++D   +I +++  QK +
Sbjct: 622 -----------SPITQFFYE-----------------SETAYKLDNKRIINTSAVIQKHV 653

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQA S  LY++ E    KL  +Y  AW  GLK+ YY RS++   +E
Sbjct: 654 DQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRSQTLKVIE 699


>gi|325103986|ref|YP_004273640.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
 gi|324972834|gb|ADY51818.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
          Length = 548

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 269/624 (43%), Gaps = 116/624 (18%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L     + E PQ    R+A   A K   K + A  F  ++S      S+P  
Sbjct: 13  QILNRGYLL-----KGETPQKAIERIA-NAAAKRLYKPELAESFIEMISKGWMSLSSPIW 66

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G  +   N
Sbjct: 67  ANMGTERGLPISCFNVHVPDHIEGITHKLGEVIMQTKTGGGTSGYFGELRARGTAVT-DN 125

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D++EFLD+ KN G+      +
Sbjct: 126 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIKEFLDI-KNIGNP---IQN 181

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                  + DR +  V  
Sbjct: 182 LFFGVCVPDYWMQDMI---------------------------------EGDREKRDV-- 206

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
                  W K+L    + G P+I F D  N   P  +      +++SNLC+EI L SS +
Sbjct: 207 -------WAKVLECRQQKGLPYIFFSDNVNRFKPDVYKDKEMPIYASNLCSEIALPSSRD 259

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKS 649
           E+ VC L S+NL        +D  K    +R A   LD V+          H ++ A   
Sbjct: 260 ESFVCCLSSMNL------ELYDEWKDTGAVRLATFFLDAVMSEFIEKTEGNHYLQSANNF 313

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG+MG+ S L    I + S +A ++ +   + +   ++ AS ELA   G  S
Sbjct: 314 AKNHRALGLGVMGWHSYLQKNMIAFESLQAKQLTNTIFKDLQEKSLKASEELANIYGEPS 373

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  +A+APT
Sbjct: 374 LLKG------------------------------------------YGRRNATLLAVAPT 391

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ + +E     +  + 
Sbjct: 392 TSSSAILGQTSPGIEPYSSNYYKAGLAKGNFIRKNKYLRALLEEKGIDNEETWRTIMLNH 451

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885
           GS+ ++  +  + K I  T  E+    +I  AS RQK+IDQAQSLN+ +  PS    K +
Sbjct: 452 GSVQHLTELTQEEKDIFKTFKELSQYEIILQASIRQKYIDQAQSLNINI--PSNLPIKDV 509

Query: 886 DFIYRQAWLMGLKTTYYLRSRSAT 909
           + +  +AW +G+KT YY RS+S +
Sbjct: 510 NNLIIEAWKLGVKTLYYQRSQSVS 533


>gi|41387637|gb|AAS01681.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 822

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339
           LGLQ  + Y+ Y + +   + E    FF+R+A   A + + K+                 
Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398
             F+  L++  F+ STP +   G      +SC+L     ++      A+ E+ +    + 
Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDALKAITEDVVPHLLAR 293

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G         G+G  +   NGK  G++  +KV +   +A N    R   +C YLE WH D
Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L++R     ++ RR  ++  A W  DL  KR        +N  WTLF     S L 
Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568
            L+ +EFE  YE  E +           ++++ +   M  ++     TG P+I FKD CN
Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   + +    VC+L SINL         N QFD+D L  
Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   ++ +++ +    EK+      +R++G+G+ GF +A   + +      A  + 
Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739
               EF+   A++ S E   ERG   ++ F  S + +G    D      LA V +     
Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+ 
Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682

Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851
              N  L+ EL+   L +E    A I+ L+  + +I    GN       LK  + TAF+ 
Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905
           D   LI+  S R  ++DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + 
Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800

Query: 906 RSATS 910
           R AT+
Sbjct: 801 RKATN 805


>gi|169838755|ref|ZP_02871943.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 228

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/230 (42%), Positives = 147/230 (63%), Gaps = 3/230 (1%)

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL  H   N++D+ +L  ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF 
Sbjct: 1   MNLSRHLNGNEWDWRRLEDSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFT 60

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y S E+ E+ D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID
Sbjct: 61  DVLERLRLAYDSEESYELIDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPID 120

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +I +L + RD ++ ++R S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +D
Sbjct: 121 TIDILEKNRDIDVKISRNSSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLD 179

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           P +  ++ +S ++G F  VN  LV ELK R LW E    +L  + G I N
Sbjct: 180 PRFTQIFSRSTLNGKFLEVNPNLVRELKDRSLWSEVK-DELLINQGDIQN 228


>gi|262184724|ref|ZP_06044145.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 731

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 185/710 (26%), Positives = 308/710 (43%), Gaps = 96/710 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296
           Y+   V  R+         L +L ++  YERDF      AF                 +L
Sbjct: 61  YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFL 120

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           G    +  Y L   +GSR    + +  RVA          E+ A +  + + +  F  +T
Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 178

Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  +  ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA I
Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPI 238

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ 
Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKV 298

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+       I
Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANPRI 357

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588
                I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI      
Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414

Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            T  +S + T V     CNLGS+N+   F +  F       T+ TAVR L  V D+ N  
Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  L
Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529

Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752
           A E+G  ++ F+ S +  G +    ID     +   + ++  E  +    R  W  LK +
Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 589

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811
           V   G+ N+   A+ PT +I+ I   + SI P    + + K    G        + N+  
Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                      +L+Y D S              +A  +E     +I++ +   + +DQ  
Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SL L+   + + + ++     AW  G+KT YY+R R      +S L+G +
Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722


>gi|293374707|ref|ZP_06621015.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325840622|ref|ZP_08167103.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
 gi|292646621|gb|EFF64623.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325490271|gb|EGC92604.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
          Length = 694

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 178/662 (26%), Positives = 293/662 (44%), Gaps = 82/662 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +   F F+ ++ +   Y  Y L  N  +  +E  +   + VA+ LA  +  K   A EF 
Sbjct: 79  FSYQFKFQSFMAVSKFYKDYALKTNDHQYYLEYYEDRIVAVALYLAQGDVNK---AFEFA 135

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    +  +TPT  N+G  R  ++ SCFL  + D L  I   L  +  L+K  GG+  
Sbjct: 136 IAMIEQRYQPATPTFLNAGKARRGEMVSCFLLEMDDSLNSITYNLNTSMQLSKIGGGVAL 195

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R     I      + GV+P +K+  D+   VNQ G+R GA  AYL  +H DVEEF
Sbjct: 196 NLSKLRARNESIKEIENAASGVLPVMKLLEDSFSYVNQLGQRPGAGAAYLNVFHWDVEEF 255

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYGKE 517
           LD +K   D++ R   ++    +P  F+    +N    +F+P  V       L DL   E
Sbjct: 256 LDTKKINADEKSRIQTLSIGLIVPSKFINLAKENQPMYVFAPHTVFLATGKHLDDLNLDE 315

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                  Y+       IK  R++    L   +  M FE+G+P+I FK   N   P + +G
Sbjct: 316 V------YDELVQNPAIKK-RQLDPRKLLTHIAKMQFESGYPYIVFKSNANAAHPLKEIG 368

Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLCTEI       T+    EE  +     CNLGS+N++     N  +   L  ++
Sbjct: 369 QIKMSNLCTEIFQLQETSTITDYGEEDQIRRDISCNLGSLNIV-----NVMERRALKESV 423

Query: 626 RTAVRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +  L  V  +    N   I+KA   N    A+GLG M          I Y S  A E
Sbjct: 424 YAGMDALTAVSSLSQIKNAPGIQKA---NEELNAVGLGSMNLHGYFAKNKIAYESELAKE 480

Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDEL 736
                   +++++I  S+++A E+G ++  F+ S +  G    ++  +     ++   EL
Sbjct: 481 FVRTYFMMVNYYSIERSMQIAMEKGRSFIGFEKSDYASGEYFKLYLTEDFTPKSDRVKEL 540

Query: 737 --AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              M   ++  W  L K VK  GM ++  +AIAPT +I  I   + SI P          
Sbjct: 541 FHEMVIPTKNDWAHLAKSVKENGMYHAYRLAIAPTQSIGYIQNATASILP---------- 590

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                      +V+ +++R   +      + Y          + +D    + +A+ +D M
Sbjct: 591 -----------VVDLVERRTYGNATTYYPMPY----------LAEDNMFFYKSAYRMDMM 629

Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            ++E  ++ Q  IDQ  S  LY+D   S ++L   Y  A  +GLK+ YY R+++ +  E 
Sbjct: 630 KVLELIAQVQPHIDQGISTTLYVDSHTSTRELVRYYLYAHHLGLKSLYYTRTKNLSFEEC 689

Query: 914 ST 915
           +T
Sbjct: 690 TT 691


>gi|314936970|ref|ZP_07844317.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655589|gb|EFS19334.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 713

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 180/666 (27%), Positives = 304/666 (45%), Gaps = 75/666 (11%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEK 335
           +++  A  + +E  FA  Y+     Y  Y L  N  + +  + +   VA+  L L +  K
Sbjct: 92  EIIEFAKSINFE--FA-SYMSASKFYKDYALKTN-DKSKYLEDYNQHVAIVALYLADGNK 147

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E +A +F   +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+
Sbjct: 148 E-QAKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLS 206

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  
Sbjct: 207 KIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNI 266

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + + 
Sbjct: 267 FHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVT 326

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIR 570
             + +I     E  A+   +K  +K  A    R+ML M+ +T    G+P++ FKD  N  
Sbjct: 327 LDDIDIEKYYDELVANPNVLK--KKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKV 380

Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618
               ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  + 
Sbjct: 381 HANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMET 435

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            K   ++ T +  L  V D  N       KK+N+   ++GLG+M     L    I Y S 
Sbjct: 436 GKFRDSVHTGMDALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESE 495

Query: 678 EAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAE 731
           EA + A+     +++++I  S+E+A+ERG AY  F  S +  G +       + +    +
Sbjct: 496 EAKDFANIFFMMMNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQFEK 555

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V++  A M   +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P      
Sbjct: 556 VKELFANMQIPTSEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMP------ 609

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                          +V+++++R   +      + +          +  +    + +AF 
Sbjct: 610 ---------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFN 644

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   
Sbjct: 645 TDQMKLIDLISTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LL 703

Query: 910 SVEKST 915
           SVE+ T
Sbjct: 704 SVEECT 709


>gi|296111475|ref|YP_003621857.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833007|gb|ADG40888.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 723

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 290/645 (44%), Gaps = 83/645 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N  +    + +  RVAM        +E+ A+   + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGQ-HYVETYVDRVAMNALFYADGREELALRLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + +R  GA +     
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNIREAGAPVMAIAN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 SAGGIVPVMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMSFLSTKKENADEKIRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536
           +    +PD F + V +N    LFSP    D+  +YGK F   +I  E Y+      +I  
Sbjct: 283 SLGLTVPDKFYELVKKNDVMYLFSP---VDVEKVYGKAFNYIDITAE-YDNMVANDQITK 338

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589
           + K+ A  L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+EI        
Sbjct: 339 Y-KVDARTLEEEISKLQQESGYPYIINIDVANRSNPIS--GKIVSSNLCSEILQVQTPSD 395

Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643
           +++  + T +     CNLGSIN++   A   F       ++ T VR L  V D  N   +
Sbjct: 396 IDNGQQYTRLGSDVSCNLGSINIVNMMATADF-----GESVDTMVRALTYVSDTSNLDVV 450

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               K NH   AIGLG MG  +      + Y   EA++        +++++I ASV +A+
Sbjct: 451 PSIAKGNHEKHAIGLGAMGLAAYFAQNKMYYGDDEALDFTSTFFMTLNYYSIKASVAIAK 510

Query: 704 ER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTI 756
           ER   +  F  S +  G +       D      +V +  A +   ++  W +L+  V   
Sbjct: 511 ERHEKFFEFDKSTYANGSYFDKYLETDWAPKTNKVIEAFAQHHIPTKHDWVQLRDDVAKY 570

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GM N+   AIAPT +I+ +   + ++ P                     +VN++++R   
Sbjct: 571 GMYNAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E MI  + Y    + N E +P      + +A++ D   +I+  +  Q+ IDQ  +L L+
Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660

Query: 877 LDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +    P G              + L  +   A+  G+K+ YY+R+
Sbjct: 661 MRSTLPDGLYEWKNNRTNKMTTRDLTILRHYAFNKGIKSLYYIRT 705


>gi|104304004|gb|ABF72279.1| HSV-1 UL39-like protein [Gallid herpesvirus 2]
          Length = 822

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 179/665 (26%), Positives = 297/665 (44%), Gaps = 83/665 (12%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339
           LGLQ  + Y+ Y + +   + E    FF+R+A   A + + K+                 
Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398
             F+  L++  F+ STP +   G      +SC+L     ++      A+ E+ +    + 
Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G         G+G  +   NGK  G++  +KV +   +A N    R   +C YLE WH D
Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L++R     ++ RR  ++  A W  DL  KR        +N  WTLF     S L 
Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568
            L+ +EFE  YE  E +           ++++ +   M  ++     TG P+I FKD CN
Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   + +    VC+L SINL         N QFD+D L  
Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   ++ +++ +    EK+      +R++G+G+ GF +A   + +      A  + 
Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739
               EF+   A++ S E   ERG   ++ F  S + +G    D      LA V +     
Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+ 
Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682

Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851
              N  L+ EL+   L +E    A I+ L+  + +I    GN       LK  + TAF+ 
Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPDCHSLLK--YKTAFDY 740

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905
           D   LI+  S R  ++DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + 
Sbjct: 741 DQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800

Query: 906 RSATS 910
           R AT+
Sbjct: 801 RKATN 805


>gi|291455663|ref|ZP_06595053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
 gi|291382591|gb|EFE90109.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
          Length = 731

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 183/661 (27%), Positives = 296/661 (44%), Gaps = 86/661 (13%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E++A+E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAIDGG------LAYTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSIDAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSR 743
            AS  LA E G  + SF          +G+ +D+      S+    A+VR EL       
Sbjct: 518 RASHALAVEHGHPFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKVR-ELFAKYGIE 576

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798
           +P    W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + + K    G 
Sbjct: 577 IPTVSDWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGR 636

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                +++ N+                       N+E   D        A+EI    +++
Sbjct: 637 VYYPAAYMTND-----------------------NLEYYED--------AYEIGWKAIVD 665

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724

Query: 918 G 918
           G
Sbjct: 725 G 725


>gi|213693324|ref|YP_002323910.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524785|gb|ACJ53532.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459506|dbj|BAJ70127.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 731

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 183/661 (27%), Positives = 296/661 (44%), Gaps = 86/661 (13%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E +A E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEAQATEYADEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKMLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKSFADISVSEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LAHTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  + + +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSF----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSR 743
            AS  LA E G A+ SF          +G+ +D+      S+    A++R EL       
Sbjct: 518 RASHALAVEHGQAFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKIR-ELFAKYGIA 576

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGD 798
           +P    W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + + K    G 
Sbjct: 577 IPTAANWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGR 636

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                +++ N+                       N+E   D        A+EI    +++
Sbjct: 637 VYYPAAYMTND-----------------------NLEYYKD--------AYEIGWKAIVD 665

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724

Query: 918 G 918
           G
Sbjct: 725 G 725


>gi|170017905|ref|YP_001728824.1| ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
 gi|169804762|gb|ACA83380.1| Ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
          Length = 723

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 167/645 (25%), Positives = 293/645 (45%), Gaps = 83/645 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N  +  + + +  RVAM        +E  A++  + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGQYYV-ETYVDRVAMNALYYANGQESLALKLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR  GA + G   
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNVREAGAPVMGIAN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 SAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSIFHPDIMAFLSTKKENADEKVRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536
           +    +PD F + V QN    LFSP    D+  +YG+ F   +I  E Y+   +   I  
Sbjct: 283 SLGLTVPDKFYELVRQNKTMYLFSP---VDVEKVYGQSFNYVDITAE-YDNMVENDAITK 338

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589
           +R + A  L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+EI        
Sbjct: 339 YR-VDARMLEEEISKLQQESGYPYIINIDVANRENP--IAGKIVSSNLCSEILQVQRPSD 395

Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643
           +++  + T +     CNLGSIN++   A   FD     +++ T VR L  V D  N   +
Sbjct: 396 IDNGQQYTRLGSDVSCNLGSINIVNMMATQDFD-----TSVDTMVRALTFVSDTSNLDVV 450

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               K N    AIGLG MG  +      + Y   EA++        +++++I +S+ +A+
Sbjct: 451 PSIDKGNKEKHAIGLGAMGLAAYFAQNQMYYGDEEALDFTTTFFMTLNYYSIKSSMRIAK 510

Query: 704 ER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS--RLP----WDELKKRVKTI 756
           ER   +  F+ S +  G +    I    + + +      +   LP    W  LK  V   
Sbjct: 511 ERHETFYEFEKSTYANGAYFDKYINNDWQPKTQKVAQAFAPHHLPTKNDWLTLKDDVAKY 570

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GM ++   AIAPT +I+ +   + ++ P                     +VN++++R   
Sbjct: 571 GMYHAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E MI  + Y    + + E +P      + +A++ D   +I+  +  Q+ IDQ  +L L+
Sbjct: 607 QEGMIGKVYYPAPGLSD-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660

Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +                D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 661 MRSTLSDKLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|227833717|ref|YP_002835424.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454733|gb|ACP33486.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 744

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 185/710 (26%), Positives = 308/710 (43%), Gaps = 96/710 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296
           Y+   V  R+         L +L ++  YERDF      AF                 +L
Sbjct: 74  YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFL 133

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           G    +  Y L   +GSR    + +  RVA          E+ A +  + + +  F  +T
Sbjct: 134 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 191

Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  +  ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA I
Sbjct: 192 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPI 251

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ 
Sbjct: 252 KKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKV 311

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+       I
Sbjct: 312 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANPRI 370

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588
                I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI      
Sbjct: 371 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 427

Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            T  +S + T V     CNLGS+N+   F +  F       T+ TAVR L  V D+ N  
Sbjct: 428 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 482

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  L
Sbjct: 483 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 542

Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752
           A E+G  ++ F+ S +  G +    ID     +   + ++  E  +    R  W  LK +
Sbjct: 543 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 602

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811
           V   G+ N+   A+ PT +I+ I   + SI P    + + K    G        + N+  
Sbjct: 603 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 660

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                      +L+Y D S              +A  +E     +I++ +   + +DQ  
Sbjct: 661 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 691

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SL L+   + + + ++     AW  G+KT YY+R R      +S L+G +
Sbjct: 692 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 735


>gi|308183793|ref|YP_003927925.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047719|gb|ADO00262.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 636

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 178/662 (26%), Positives = 293/662 (44%), Gaps = 90/662 (13%)

Query: 289 RDFAFEY---LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           RD  F +   LG    Y +Y +  N  + +  + F  RV           E+ A +  + 
Sbjct: 2   RDHHFRFRSFLGAYKFYTQYAMKTNDGQ-QFLEDFVDRVVFNALYLANGDEQLANDIADE 60

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  V D +  I   +     L++  GG+G + 
Sbjct: 61  LISQRYQPATPTFLNAGKKRRGEMVSCFLIDVADSMLSIGRGVNSALQLSRIGGGVGVNL 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  I   +  S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FLD
Sbjct: 121 SNLRASGDPIKQISNASSGVVPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHPDILHFLD 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LFSP +V   +       +I  E 
Sbjct: 181 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNEPMYLFSPYDVEREYRTPFAYIDITKE- 239

Query: 525 YERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           Y   A    IK  VF   +A  L +K+  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 240 YNNMAANPNIKKSVF---NARKLEQKISQLQQESGYPYILNIDTANQTNPVD--GKIIMS 294

Query: 583 NLCTEI-----------TLNSSSEETAV-CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI            L+  +  T + CNLGS N++     N  D      ++  AVR
Sbjct: 295 NLCSEILQPQEPSKLDDDLSYKTIGTDISCNLGSTNIM-----NMIDSPDFGHSVEVAVR 349

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N  +  IGLG MG  +AL    I Y SPEA+E  D     
Sbjct: 350 ALTLVTDTTDVKEVPTVKHGNELYHTIGLGAMGLHTALARHQIEYGSPEALEFTDAYFLA 409

Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQGV---FPIDSIGLLAEVRDELAMN 739
           ++++++  S  +A+ER   ++ F       GS +DQ +   F   S   +A++   + + 
Sbjct: 410 LNYYSLVTSNRIARERHETFAKFDQSKYADGSYFDQYLNADFKFKSTK-VAKIFKNIKL- 467

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W  LK+ V T G+ + N +A+AP  +I+ +   S S+ P               
Sbjct: 468 -PSVTDWKALKQAVITGGLYHRNRLAVAPNGSISYVNETSASLHP--------------- 511

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                 +   ++QR    E  +  + Y    + N E +P      +  A++ID   +I++
Sbjct: 512 ------ITQLVEQR---QENKVGSIFYPAPYLSN-ETLP-----YYTPAYDIDQRKIIDT 556

Query: 860 ASRRQKWIDQAQSLNLYLD----------------EPSGKKLDFIYRQAWLMGLKTTYYL 903
            +  QK IDQ  SL L++                 + + + L+ +   AW  G+K+ YY+
Sbjct: 557 YAVAQKHIDQGMSLTLFMRSVLKPDLYEWKDNNNLKMTTRDLNRLRNYAWTKGIKSLYYI 616

Query: 904 RS 905
           R+
Sbjct: 617 RT 618


>gi|311741269|ref|ZP_07715093.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303439|gb|EFQ79518.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 731

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 185/710 (26%), Positives = 307/710 (43%), Gaps = 96/710 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296
           Y+   V  R+         L +L ++  YERDF      AF                 +L
Sbjct: 61  YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFL 120

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           G    +  Y L   +GSR    + +  RVA          E+ A +  + + +  F  +T
Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDDIMTGRFQPAT 178

Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  +  ++ SCFL  + D+L  I   +     L+K  GG+    + +R  GA I
Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPI 238

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ 
Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGSRQGAGAVYLHAHHPDILRFLDTKRENADEKV 298

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+       I
Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANPRI 357

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588
                I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI      
Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414

Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            T  +S + T V     CNLGS+N+   F +  F       T+ TAVR L  V D+ N  
Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  L
Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529

Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752
           A E+G  ++ F+ S +  G +    ID     +   + ++  E  +    R  W  LK +
Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQ 589

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811
           V   G+ N+   A+ PT +I+ I   + SI P    + + K    G        + N+  
Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                      +L+Y D S              +A  +E     +I++ +   + +DQ  
Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SL L+   + + + ++     AW  G+KT YY+R R      +S L+G +
Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722


>gi|282851732|ref|ZP_06261096.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
 gi|282557135|gb|EFB62733.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
          Length = 505

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/517 (28%), Positives = 245/517 (47%), Gaps = 75/517 (14%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++
Sbjct: 5   SSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLS 64

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KV 536
               IPD+  +   +N    LFSP    D+   YGK   +  I  E Y+   +   I K 
Sbjct: 65  LGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKE-YQNILNNPCIKKT 120

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-LNSSSE 595
           F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI  +N+ S 
Sbjct: 121 F--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPST 178

Query: 596 ET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI---DINCH 641
                          CNLGS+N+ A   +     DKL   +  +V+ L+ V    D++C 
Sbjct: 179 YNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCA 234

Query: 642 -TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            +IEK  K+N   RAIGLG M     L   HI Y SPEAVE        I++HA   S +
Sbjct: 235 PSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNK 291

Query: 701 LAQERGAYSSFKGSLW----------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           LA+  GA+  FK S +          D+ V P      + E+  +  +   ++  W+EL 
Sbjct: 292 LAETYGAFKGFKDSSYASGDYFKKFIDEEVSP--KTDKIKEIVAKYKLVIPTKEDWEELI 349

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ +N+ 
Sbjct: 350 TKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK- 408

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                       D+ +     A+E+ P  +I+  +  QK++DQ+
Sbjct: 409 ----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQS 440

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            SL L++ D  + + L+  Y  A+     + YY+R R
Sbjct: 441 ISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIR 477


>gi|298253144|ref|ZP_06976936.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297532539|gb|EFH71425.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 741

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 173/633 (27%), Positives = 290/633 (45%), Gaps = 80/633 (12%)

Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F + A  +AL+  +  EK A  + + + +  F  +TPT  N G  +  +  SCFL  + D
Sbjct: 148 FAQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 207

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    
Sbjct: 208 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 267

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +   
Sbjct: 268 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 327

Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP    D+   YGK F +I+  E+Y+       I   + I A   +  +  + FE+
Sbjct: 328 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTIAEIQFES 383

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI       T N+    + V     CNLGS
Sbjct: 384 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 441

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+      N      L +++  AVR L +V +  +  ++   ++ N    AIGLG M  
Sbjct: 442 LNIAKAMDGN------LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 495

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718
              L   H+ Y S EA++  D     I++HA  AS  LA ERG A+++FK S + +    
Sbjct: 496 HGFLAREHMQYGSEEALDFTDMYFMTIAYHAYKASHALAVERGHAFANFKTSAYAKPAGK 555

Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767
              F   + G  +      +VRD  A    + +P    W++L+  + + G+ N    A+ 
Sbjct: 556 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILSDGIYNEYLQAVP 614

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + + K    G      +++ N+                 
Sbjct: 615 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 657

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                 N++   D        A+EI    +I++ +   + +DQ  SL L+  D  + + L
Sbjct: 658 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 703

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+KT YY+R R   ++E + ++G
Sbjct: 704 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 735


>gi|73671045|ref|YP_307060.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
 gi|72398207|gb|AAZ72480.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
          Length = 561

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 160/592 (27%), Positives = 273/592 (46%), Gaps = 90/592 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  +AL + E     ++F +L+    F+ S+PTL N+GT   QL++CF+  V D +  
Sbjct: 42  RVAEAVALTDEEY----LDFKDLMLRKVFLPSSPTLMNAGTEFGQLAACFVIPVEDKVEE 97

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF +++  A++ K  GG G D++ +R  G+     +  + G +  +K+ N+    V Q G
Sbjct: 98  IFDSIKAAALIQKTGGGTGFDFSKIRPEGSSNSCGDDATSGPVAVMKLFNEATEIVKQFG 157

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L+  H D+  F+  +   G+      + N +  +PD FM+ V         
Sbjct: 158 RRRGANMGILDISHNDILSFIRSKHVEGE----LSNFNISVMVPDAFMELV--------- 204

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                         E + A E + RQ D    ++F +I    +WR         G P I 
Sbjct: 205 --------------EADKADEVWNRQTDVTVGRIFSEIVE-GIWR--------NGEPGIL 241

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +    +G + ++N C E  L         CNLGSINL     + + ++D L 
Sbjct: 242 FYDRINRDNFTPALGDISATNPCGEEPLLPFE----ACNLGSINLSLCVIDGKVNWDFLR 297

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
                A+R LDN ID N + + + + +    R +GLG+MG    L  + +PY S EA+E+
Sbjct: 298 EVAGKAIRFLDNEIDKNAYPVPEIETATKRTRKVGLGVMGLHDMLLKIGLPYDSQEALEL 357

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A++ ME I++ +I  S +LA E+G++  ++ S W+                         
Sbjct: 358 AEKLMEQITWASIRESRKLAVEKGSFPGYEDSTWE------------------------- 392

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTV 801
            LP            MRN+   A+APT TI+ + G S  I+P +  +Y ++   G +F +
Sbjct: 393 -LP------------MRNAALTAVAPTGTISILAGCSAGIEPVFSWVYRRTQTVGREFML 439

Query: 802 VNSFLVNELKQR-DLWDEAMISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWLI 857
           V+ F     K +    D + + +  Y  G++ ++E    + ++ K++  +A +ID    I
Sbjct: 440 VHPFFKAHFKSKLSEADYSWLLEHVYKYGTLQDVENPELVSEEEKQLFRSALDIDWKAHI 499

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLK--TTYYLRSR 906
           +  +  Q+      S  + +   +GK+ +D     AW  GLK  T Y   SR
Sbjct: 500 DMQAAFQRHCHAGISKTINMPASAGKEDIDKALVYAWKQGLKGLTIYRTGSR 551


>gi|256384255|gb|ACU78825.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256385088|gb|ACU79657.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455870|gb|ADH22105.1| ribonucleoside-diphosphate reductase, alpha subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 720

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 167/661 (25%), Positives = 293/661 (44%), Gaps = 69/661 (10%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +  RV M        
Sbjct: 82  FDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETYTDRVLMNALFLGNG 140

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAML 393
              +A      +    F  +TPT  N+  +H  +  SC+L    D++  I   +  +  L
Sbjct: 141 NFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQL 200

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R  G+ I   +G S G IP +K+  D+    +Q G+R+GA   Y+ 
Sbjct: 201 SKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYIS 260

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+   LD ++   D++ R   ++    IPD+  +    N    LFSP +V  +++ 
Sbjct: 261 AHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYNK 320

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I  + YE   +    K +  ISA   +  +  + FE+G+P+I F+D  N R+  
Sbjct: 321 PLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYPYILFEDTVNRRNAH 378

Query: 574 QHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC+EI   S++ E +             CNLGS+N+     + +    + 
Sbjct: 379 DKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDICCNLGSLNIDKMMKSGK----EF 434

Query: 622 ASTIRTAVRVLDNV---IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +I  A+  LD V    D++   +I+K    NH   A+GLG M     L    I Y SP
Sbjct: 435 SDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNH---AVGLGAMNLHGFLATNKIMYDSP 491

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-----------IDSI 726
           EAV+  +     ++++A  AS +LAQE   ++SF  S +  G +                
Sbjct: 492 EAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPQT 551

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P  
Sbjct: 552 NRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVV 611

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + V+         V ++ +N              ++ Y+  ++G  E   D +  I A
Sbjct: 612 STVEVRKEGKLGRVYVPAYQIN------------FDNMGYY--AMGAYELGADPIINIVA 657

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A               Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R 
Sbjct: 658 AA---------------QQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRI 702

Query: 906 R 906
           R
Sbjct: 703 R 703


>gi|86158906|ref|YP_465691.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775417|gb|ABC82254.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 595

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 168/613 (27%), Positives = 269/613 (43%), Gaps = 76/613 (12%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355
            +L  RY L   G + IE P+A F RVA  +A  E    +   A  F   +++   + ++
Sbjct: 10  HVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEAPAARALWAERFEARMAALELLPNS 69

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R  G  + 
Sbjct: 70  PTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRPRGDVVK 129

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  G     
Sbjct: 130 TTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAAG----- 184

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +   PD   +   +   W L  P                          RG   
Sbjct: 185 LENFNISVAAPDALFQAAARGEPWALRHP--------------------------RGG-A 217

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V R++ A AL  ++    + +G P + F D     +P   +G   + N C E  L     
Sbjct: 218 VVREVDAGALLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQPLLPFE- 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               C LGS+NL       + D+++L + +R  VR+LD+V+++N   + +  + +  +R 
Sbjct: 277 ---ACTLGSVNLARFERGGRVDHERLGACVREGVRLLDDVLEVNVWPLPQIAEISRRNRK 333

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+  F  S 
Sbjct: 334 IGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFPGFASS- 392

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                                A  R    P             RN+    IAPT T+A I
Sbjct: 393 ---------------------APARAGGRP------------RRNATVTTIAPTGTLAII 419

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  I+P +   YV+  + GD  +                EA +  ++   G    + 
Sbjct: 420 AGCSSGIEPLFALTYVRHAL-GDAALPEEHPALGRALLAAGAEAALPAVRAA-GRARGVA 477

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWL 894
            +P+ + ++ ATA ++ P   +   +  Q+ +D   S  + L   +  + +   YR A+ 
Sbjct: 478 GVPEAVARVFATAHDVAPEAHVRMQAAFQRHVDNGVSKTINLPRTATVEDVAGAYRLAFE 537

Query: 895 MGLKTTYYLRSRS 907
           +G K     R  S
Sbjct: 538 LGCKGITVYRDGS 550


>gi|256848139|ref|ZP_05553583.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715199|gb|EEU30176.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 723

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 181/689 (26%), Positives = 305/689 (44%), Gaps = 92/689 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317
           Y+EEG   +  +E +   D +Y   D    + F F  ++     Y +Y L  N     + 
Sbjct: 67  YLEEGFIRQYRNEFI---DKLY---DYLKSKHFHFHSFMAAYKFYAQYALRTNDKEYYL- 119

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376
           + +  RVAM         E  A++  + L +  +  +TPT  N+G  R  +  SCF    
Sbjct: 120 ENYIDRVAMNALYLANGNEDLAMDLAHELINQRYQPATPTFLNTGRKRRGEFVSCFEIQT 179

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I   +     L+K  GG+G + T +R  GA I    G + GV+P +K+  D   
Sbjct: 180 TDNMNTIGRTINSALQLSKIGGGVGINLTNLREAGAPIKKIKGAASGVVPVMKLLEDAFS 239

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R+GA   YL  +H D+ EFL  +K   D++ R   ++    +PD F + V  +
Sbjct: 240 YSNQLGQRQGAGVVYLSVFHPDIVEFLGAKKENADEKIRIKTLSLGVTVPDKFYELVEND 299

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD----RGEIKVFRKISAVALWRKMLTM 552
               LFSP    D+  +YG+ F  AY +  ++ D      EI   +KI+A  L  ++  +
Sbjct: 300 EDMYLFSP---YDVERVYGEPF--AYVDITKEYDNLVANDEITK-KKINARDLEDEISKL 353

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---C 600
             E+G+P+I   D  N  +P    G +  SNLC+EI           + + +E      C
Sbjct: 354 QQESGYPYIVNIDTENRANPID--GKIIMSNLCSEIAQVQKPSVVNDDQTYQELGTDVSC 411

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
           NLGS N+      N  +      +IR   R L ++ DI N   +   K+ N    AIGLG
Sbjct: 412 NLGSTNIA-----NMMETPDFGKSIRAITRGLTHISDIENLDIVPSIKRGNARSHAIGLG 466

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
            MG    L   HI Y SP A+E        +++  + AS E+A ER   ++ F  S +  
Sbjct: 467 AMGLHGYLAKHHIQYGSPVALEFTSVYFMLLNYWTLVASHEIAVERQETFADFAKSAYAD 526

Query: 719 GVFPIDSI----GLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G +    I    G  +E   EL   +   S   W +LK  +   G+ N+  +A+AP  + 
Sbjct: 527 GSYFDKYITKDWGPQSEAVQELFAGIFIPSIDDWKQLKAAIMKDGIYNAYRLAVAPNGST 586

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   + S+ P                     ++N++++R    E MI  + Y    + 
Sbjct: 587 SYIGDSTSSLQP---------------------IINKIEER---QEKMIGKIYYPAPYLS 622

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--------------- 877
           N      D    + +A++ D   +I++ +  Q+ +DQ+ S+ L++               
Sbjct: 623 N------DTMPYYKSAYDTDMRSVIDTYAAAQQHVDQSLSMTLFMRSTIPEGMYEWKDGR 676

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TDKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|257464835|ref|ZP_05629206.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
 gi|257450495|gb|EEV24538.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
          Length = 554

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 260/591 (43%), Gaps = 114/591 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGFAEKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSGYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+                 N I  L    V     W                
Sbjct: 169 HGDIDEWLDIH-------------TEGNPI-QLMYYGVCVGREWL--------------- 199

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            E   A + Y+RQ                LW K+L    ETG P++ FKD  N   P  +
Sbjct: 200 -ESMKAGDPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SSS+E+ VC L S+NLL         +D+   T   A  VL
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLY--------FDEWKDT--DAPEVL 292

Query: 633 DNVIDI-NCHTIEKAK---------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +D+     IEK+K         K    HRA+GLG++G+ S L   +IP+ S EA++ 
Sbjct: 293 TYFLDVVMSEFIEKSKEIPFLHRATKFAIRHRALGLGVLGWHSYLQANNIPFDSFEAMQK 352

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            +   + +    + AS ELAQ  G     KG                             
Sbjct: 353 NNLIFKTLQEKTLKASQELAQRFGEPELLKG----------------------------- 383

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV 801
                         G RN+  M+IAPT + + I G VS S++P   N YVK         
Sbjct: 384 -------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVY 430

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
            N FL   LK++ L  E +   + ++DGS+ ++E++ +  K +  T  EI  + +I+ A+
Sbjct: 431 KNPFLEKLLKEKGLDKEEIWESILHNDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAA 490

Query: 862 RRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +RQK+IDQ QS+NL +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 491 QRQKYIDQGQSINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541


>gi|56698026|ref|YP_168397.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
 gi|56679763|gb|AAV96429.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
          Length = 760

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 162/593 (27%), Positives = 266/593 (44%), Gaps = 92/593 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E + ++   EFY  L  F ++ +      +GT R   L +CF + T+PD +
Sbjct: 37  RIARDLARVEQDPDRWEREFYTALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFIGAKS----DPARLRMFNMSVLVTDAFMEAVKADGSW- 211

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             E+ ++           KV+  + A  LW K++   ++   P 
Sbjct: 212 ------------------ELQFDG----------KVYHTVEARTLWNKIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +V  + ++N C E  L         C LGS+NL A   +N F    
Sbjct: 244 VIFIDRINAANNLNYVETIAATNPCGEQPL----PPYGACLLGSVNL-ARLVSNPFEDAA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D + L   + TAVR++DNV+D +   + +        R IGLG+ G   AL +L + Y
Sbjct: 299 ELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRRIGLGVTGLADALLMLGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA +  ++ +  I+  A  ASVELA+E+GA+  F            D+   LA    
Sbjct: 359 GSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLF------------DAEKYLA---- 402

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
               + T R   +++++ ++T G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 403 ----SGTMRAMDEDVREAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            +  D +     +V+   Q  RD + +A + D   +  ++      P D  ++ A A   
Sbjct: 459 VLQKDGSRTEEEVVDYAVQMWRDKFADAPLPDYFVNAQTLA-----PADHVRMQAAA--- 510

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                       QKWID + S  +   E  S      +Y QAW +G K  TTY
Sbjct: 511 ------------QKWIDSSISKTINCPEDISFDAFKDVYMQAWDLGCKGCTTY 551


>gi|82778047|ref|YP_404396.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|309786254|ref|ZP_07680882.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81242195|gb|ABB62905.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|308925999|gb|EFP71478.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 616

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 250/521 (47%), Gaps = 40/521 (7%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R    + F  RV M  L L + + E  A++  + + 
Sbjct: 84  FRFQTFLGAWKFYTSYTLKTFDGKR--YLEDFADRVTMVALTLAQGD-ETLALQLTDEML 140

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 141 SGRFQPATPTFPNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 201 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           +   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F ++A   +
Sbjct: 261 RENADEKIRIKILSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISQH 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    E    + ++A   +++++ + FE+G+P+I ++D  N  +P    G ++ SNLC
Sbjct: 318 YDELVADERIRKKYLNARDFFQRLVEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLC 375

Query: 586 TEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI  +NS+SE               CNLGS+N +AH      D    A T+ TAVR L 
Sbjct: 376 SEILQVNSASEYDENLDYTCTGHDISCNLGSLN-IAH----TMDSPDFARTVETAVRGLT 430

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     I++
Sbjct: 431 AVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITW 490

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
           HA+  S+ LA+ERG  ++ FK S +  G +    +          + E+     +   + 
Sbjct: 491 HALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTH 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             W +L+  V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 551 EMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 591


>gi|293380786|ref|ZP_06626831.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
 gi|290922650|gb|EFD99607.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
          Length = 516

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 221/441 (50%), Gaps = 36/441 (8%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ +  + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +F
Sbjct: 204 CLTNLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQF 263

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFE 519
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  
Sbjct: 264 LDTKRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDIS 320

Query: 520 IAYENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I  E Y+   +   I K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G 
Sbjct: 321 ITKE-YQNLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGR 377

Query: 579 VHSSNLCTEI----TLNSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    T ++ +E+ +         CNLGS+N+ A   +     DKL S + 
Sbjct: 378 IVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVS 433

Query: 627 TAVRVLDNVI---DINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            +V+ L+ V    D++C  +IEK  K+N   RAIGLG M     L   HI Y SPEAVE 
Sbjct: 434 DSVQALNRVARSSDLDCAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEF 490

Query: 683 ADESMEFISFHAISASVELAQ 703
                  I++HA   S +LA+
Sbjct: 491 TGIFFYTIAYHAFKESNKLAE 511


>gi|84683506|ref|ZP_01011409.1| ribonucleoside-diphosphate reductase, putative [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668249|gb|EAQ14716.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2654]
          Length = 758

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 161/591 (27%), Positives = 260/591 (43%), Gaps = 91/591 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E E   RA EFY  L  F F+ +      +GT R+  L +CF + T+PD +
Sbjct: 37  RIADALADSEPE---RAGEFYAALEDFKFLPAGRITAGAGTARNVTLFNCFVMGTIPDSM 93

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 94  AGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVAADASGPLSFMDVWDAMCRTIMS 153

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V     W 
Sbjct: 154 AGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNMSVLVTDPFMEAVKSGGAW- 208

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             ++ ++             +R + A  LW K++   ++   P 
Sbjct: 209 ------------------DLTFDG----------TTYRTVEARDLWNKIMQATYDYAEPG 240

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGSINL A    + F    
Sbjct: 241 VIFIDRINRMNNLAYCETIAATNPCGEQPL----PPYGACLLGSINL-ARLVEHPFEEAA 295

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             DYD L+  + TAVR++DNV+D +   +E+  +     R IGLG+ G   AL +L + Y
Sbjct: 296 TLDYDALSDLVTTAVRMMDNVVDASRFPLEQQAREAEAKRRIGLGVTGLADALLMLGLRY 355

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA    +  M+ I+  A  ASVELA+E+G +  F    +                  
Sbjct: 356 GSDEAAAQTEVWMKAIARAAYLASVELAKEKGPFPLFDAEAY------------------ 397

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
            LA      +  D++++ ++  G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 398 -LASGSLQHMD-DDVREAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 455

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   Q  +W +      K+ D           DL      A  + P
Sbjct: 456 VLQKDGSRTEEEVVDYAVQ--MWRD------KFGDA----------DLPDYFVNAQTLAP 497

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
           M  ++  +  QKW+D + S  +   E  S +    +Y +AW  G K  TTY
Sbjct: 498 MDHVKMQAAAQKWVDSSISKTINCPEDISFEGFKDVYMEAWETGCKGCTTY 548


>gi|308173698|ref|YP_003920403.1| ribonucleoside-diphosphate reductase major subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606562|emb|CBI42933.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553368|gb|AEB23860.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens TA208]
 gi|328911842|gb|AEB63438.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 700

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 289/658 (43%), Gaps = 92/658 (13%)

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F  ++     Y+ Y L  N  +  +E  +     VA+  A  + EK K   ++ 
Sbjct: 85  YAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVALFFANGDAEKAK---DYV 141

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            L+ +  +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K  GG+  
Sbjct: 142 RLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSL 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +F
Sbjct: 202 NLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDF 261

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E ++  
Sbjct: 262 LDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMDMT- 320

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE   D   +K   K++A  L  K+  +  E+G+P+I F+D  N      HV  V  S
Sbjct: 321 AMYEELVDNPRVKK-EKVNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFS 379

Query: 583 NLCTEITLNSS-------SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S         EE  +     CNLGS+N+L     N   +  +  T++ A  
Sbjct: 380 NLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-----NVMKHKSIERTVKLATD 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V +  +       +++N   ++IGLG M     L    I Y SPEA + A+     
Sbjct: 435 SLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMM 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELA 737
           ++F++I  S ELA+E+G  +  ++GS +  G +             + I  L E      
Sbjct: 495 VNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFE-----G 549

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNL 789
           M+  +   W ELK  V   GM +S  + IAPT +I+ +   + S+ P        +Y N 
Sbjct: 550 MHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNS 609

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                M G     N F   E                                      A+
Sbjct: 610 KTYYPMPG-LASNNWFFYKE--------------------------------------AY 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ IDQ  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 631 DMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|237626477|gb|ACR02999.1| UL39 [synthetic construct]
          Length = 822

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 179/665 (26%), Positives = 296/665 (44%), Gaps = 83/665 (12%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--------------KRA 339
           LGLQ  + Y+ Y + +   + E    FF+R+A   A + + K+                 
Sbjct: 174 LGLQSALKYEEYLVELEDGKKESLCQFFVRLAAAAATEASMKKPFMTTLTTGVANWRTTF 233

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSG 398
             F+  L++  F+ STP +   G      +SC+L     ++      A+ E+ +    + 
Sbjct: 234 TTFFLALANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLAR 293

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G         G+G  +   NGK  G++  +KV +   +A N    R   +C YLE WH D
Sbjct: 294 G---------GIGISLQHLNGKF-GLMHVMKVLDSLVMAANVNESRPTGICVYLEPWHAD 343

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L++R     ++ RR  ++  A W  DL  KR        +N  WTLF     S L 
Sbjct: 344 IMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLFD-SRASILT 402

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568
            L+ +EFE  YE  E +           ++++ +   M  ++     TG P+I FKD CN
Sbjct: 403 KLHSEEFEKEYERLESEG--------LGVASIPIRDMMFAIIKSAASTGSPFILFKDACN 454

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   + +    VC+L SINL         N QFD+D L  
Sbjct: 455 RHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQFDFDALRY 514

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   ++ +++ +    EK+      +R++G+G+ GF +A   + +      A  + 
Sbjct: 515 AVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDERARSLN 574

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIG--LLAEVRDELAMN 739
               EF+   A++ S E   ERG   ++ F  S + +G    D      LA V +     
Sbjct: 575 KLIFEFMLLEAMTVSCEFC-ERGLPPFADFSNSYYARGRLHFDGWANVELAAVEE----- 628

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+ 
Sbjct: 629 ------WNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGEL 682

Query: 800 TVVNSFLVNELKQRDLWDE----AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEI 851
              N  L+ EL+   L +E    A I+ L+  + +I    GN       LK  + TAF+ 
Sbjct: 683 LRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK--YKTAFDY 740

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRS 905
           D   LI+  S R  + DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + 
Sbjct: 741 DQALLIDLCSDRAPFADQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKI 800

Query: 906 RSATS 910
           R AT+
Sbjct: 801 RKATN 805


>gi|297243044|ref|ZP_06926982.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
 gi|296889255|gb|EFH27989.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
          Length = 735

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 288/632 (45%), Gaps = 78/632 (12%)

Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F + A  +AL+  +  EK A+ + + + +  F  +TPT  N G  +  +  SCFL  + D
Sbjct: 142 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 201

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    
Sbjct: 202 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 261

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +   
Sbjct: 262 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 321

Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP    D+   YGK F +I+  E+Y+       I   + I A   +  +  + FE+
Sbjct: 322 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 377

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI       T N+    + V     CNLGS
Sbjct: 378 GYPYILFEDTVNRTNPIK--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 435

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D D L +++  AVR L +V +  +  ++   ++ N    AIGLG M  
Sbjct: 436 LNIA-----KAMDGD-LGASVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 489

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF----------K 712
              L   H+ Y S EA++  D     +++HA  AS  LA ERG A++SF          K
Sbjct: 490 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFASFKTSAYAKPAGK 549

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAP 768
           G+ +D+      S+    +   +L       +P    W++L+  +   G+ N    A+ P
Sbjct: 550 GNYFDKYTDGSRSLEPRTQAVRDLFARFNVAIPSVSDWEQLRDEILRDGIYNEYLQAVPP 609

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + + K    G      +++ N+                  
Sbjct: 610 TGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND------------------ 651

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                N++   D        A+EI    +I++ +   + +DQ  SL L+  D  + + L+
Sbjct: 652 -----NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLN 698

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
                AW  G+KT YY+R R   ++E + ++G
Sbjct: 699 KAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 729


>gi|12084868|ref|NP_073333.1| ribonucleotide reductase subunit 1 [Meleagrid herpesvirus 1]
 gi|11095872|gb|AAG30079.1|AF282130_42 UL39 ribonucleotide reductase large subunit [Meleagrid herpesvirus
           1]
 gi|12025151|gb|AAG45777.1|AF291866_44 UL39 ribonucleotide reductase, large subunit [Meleagrid herpesvirus
           1]
          Length = 820

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 182/663 (27%), Positives = 287/663 (43%), Gaps = 79/663 (11%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN-------LL 346
           LGLQ  + Y+ Y + + G + E    FF+R+A   A +   ++       N         
Sbjct: 172 LGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKPLIASLTNGSANWRTAF 231

Query: 347 SSFH-------FMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAK 395
           +SF        F+ STP +   G      +SC+L    TT   D   +        +LA+
Sbjct: 232 TSFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQDTIKVITNDVVPHLLAR 291

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
                        G+G  +   N KS G++  LK+ +   VA N    R   VC YLE W
Sbjct: 292 ------------GGIGISLQHVNQKS-GLMHVLKLIDSLIVATNVNESRPTGVCVYLEPW 338

Query: 456 HIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508
           H D+   L +R     ++ RR  ++  A W  DL  KR        +N  WTLF     S
Sbjct: 339 HSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNGEKNVMWTLFD-SRAS 397

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L  LYG +FE+ YE  E++     I V  +I    +   ++     TG P+I FKD CN
Sbjct: 398 ILSKLYGDKFEVEYERLEKEG----IGV-AQIPIRDMMFAIIKSAASTGSPFILFKDACN 452

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   ++     VC L SINL           +FD+D L  
Sbjct: 453 RHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVRRVNGECKFDFDALRH 512

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A    + ++D +     K++     +R+IG+G+ GF +A+  L +         + 
Sbjct: 513 AVRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAMLSLGLDLEDGAVRALN 572

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +  E +   A++ S E   ERG   +  F  S + QG    D            ++  T
Sbjct: 573 KQIFELMLLEAMTVSCEFC-ERGLPPFPDFSDSYYAQGRLHFDGWD---------SVELT 622

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W  L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+   
Sbjct: 623 APEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFSNMFSKVTSAGELLR 682

Query: 802 VNSFLVNELKQ--------RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            NS L+ EL+Q        R     A+ S       ++G+       LK  + TAFE D 
Sbjct: 683 PNSQLMRELRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTRLLK--YKTAFEYDQ 740

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRS 907
             LI+  + R  ++DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + R 
Sbjct: 741 SLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAGLKTGMYYCKIRK 800

Query: 908 ATS 910
           AT+
Sbjct: 801 ATN 803


>gi|72080560|ref|YP_287618.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 7448]
          Length = 713

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 164/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 151 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 211 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F +I+  ENY +
Sbjct: 271 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQ 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                EIK    ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+E
Sbjct: 328 MLANPEIKK-TFISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           IT  S+              +   CNLGS+N+     +   D++++      A+ V+   
Sbjct: 385 ITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSRN 443

Query: 636 IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F A
Sbjct: 444 SDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSA 500

Query: 695 ISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP- 745
             AS +LA++ G +S F+ + +  G        V P   +    +++ EL       +P 
Sbjct: 501 FKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIPT 559

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++          
Sbjct: 560 QEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857
                                    +G +G I     +  P   K     A+E+ P+ +I
Sbjct: 611 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 645

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 646 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 695


>gi|317482332|ref|ZP_07941352.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916212|gb|EFV37614.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 731

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 180/660 (27%), Positives = 291/660 (44%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E +A E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEAQATEYVDEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKTMDGG------LAHTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  + + +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744
            AS  LA E G  ++SF  S + +     +      + R  L   RT R+          
Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576

Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + ++       
Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                             E  I  + Y    + N     D+L   +  A+EI    ++++
Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|322692091|ref|YP_004221661.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456947|dbj|BAJ67569.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 731

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E++A+E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             L  T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LGHTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  + + +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744
            AS  LA E G  ++SF  S + +     +      + R  L   RT R+          
Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576

Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + ++       
Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                             E  I  + Y    + N     D+L   +  A+EI    ++++
Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|75758222|ref|ZP_00738347.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494276|gb|EAO57367.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 694

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 171/651 (26%), Positives = 292/651 (44%), Gaps = 70/651 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ Y+     Y  Y L  +  +I + + +  R A+      +   K+A+ + N 
Sbjct: 77  YTHKFEFQSYMAATKFYKDYSLRSDDKKIYL-EDYEDRAAIVALYLASGNTKKALRYVNQ 135

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +   ++  +TPT  NSG  R  +L SCFL  + D L  I   L     L+K  GG+  + 
Sbjct: 136 IMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVAKQLSKIGGGIAINL 195

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +RG    I G    + GV+P +K+  D+   +NQ G+R GA  AYL  +H D+ EFLD
Sbjct: 196 SKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAAYLNIFHWDLIEFLD 255

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++     P  F +   QN    LF+P  V   + ++  + ++  + 
Sbjct: 256 SKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKAYGVHLDDMDLDEKY 315

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K    ++A  +  K+ T+  E+G+P+   K   N + P + +G V  SNL
Sbjct: 316 DELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQHPLKDLGGVKMSNL 375

Query: 585 CTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           CTEI       ET+V               C LGS+N++     N  +   +   + T +
Sbjct: 376 CTEIF---QYMETSVINDYNIADWIKNDISCVLGSLNIV-----NVMENKDVKEAVHTGM 427

Query: 630 RVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +L +V D +C  IE A   KK+N T  ++GLG M     L    IPY S +A + A   
Sbjct: 428 EMLTDVTDKSC--IENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDFARVF 485

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSR 743
              +++H+I  S E+A+ERG ++  F+ S + +G +     +   L +      +    +
Sbjct: 486 FAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLFEGIQ 545

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +P    W+ L K+V+  G+ +S  +AIAP  +     G  Q+  PS   +  K       
Sbjct: 546 IPTTADWERLMKQVQRDGLYHSYRLAIAPNQS----SGYVQNATPSVMPIVDKVETRSTD 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                + +  L ++  +                            + +A+E+D M +I+ 
Sbjct: 602 KATTYYPMPYLSKQTFFS---------------------------YKSAYEMDQMKVIDL 634

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +  Q  +DQ  S  L++ +  S + L   Y  A   GLK+ YY R+ ++T
Sbjct: 635 IAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 685


>gi|254476564|ref|ZP_05089950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
 gi|214030807|gb|EEB71642.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
          Length = 766

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 163/591 (27%), Positives = 261/591 (44%), Gaps = 87/591 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +++     F+N L  F ++ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARDLARAEKDQDAWEETFFNALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  SGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGSW- 211

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             E+ ++           KV++ + A  LW K++   ++   P 
Sbjct: 212 ------------------ELIFDG----------KVYQTVQARDLWNKIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +V  + ++N C E  L         C LGSINL A    N F    
Sbjct: 244 VIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLLGSINL-ARLVKNPFEKES 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D + L   + TAVR++DNV+D++   +E   +     R IGLG+ G   AL +L + Y
Sbjct: 299 ELDPEGLKELVATAVRMMDNVVDVSKFPLEAQAQEAQNKRRIGLGVTGLADALLMLGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA    +E +  I+  A  ASVELA+E+GA+  F            D+   LA    
Sbjct: 359 GSDEAARQTEEWLHAIARAAYLASVELAKEKGAFPLF------------DAEAYLASGN- 405

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
              MN       ++++  ++  G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 406 --MMNMD-----EDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   Q  ++ E   +D +  D  +      P +  K+ A A     
Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--MYREKFGADAELPDYFVNAQTLTPAEHVKMQAAA----- 511

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                     QKWID + S  +   E  S      +Y QAW +G K  TTY
Sbjct: 512 ----------QKWIDSSISKTINCPEDISFDSFKDVYMQAWDLGCKGCTTY 552


>gi|255325477|ref|ZP_05366579.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255297415|gb|EET76730.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 731

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 185/710 (26%), Positives = 306/710 (43%), Gaps = 96/710 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF------AF----------------EYL 296
           Y+   V  R+         L +L ++  YERDF      AF                 +L
Sbjct: 61  YVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFL 120

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           G    +  Y L   +GSR    + +  RVA          E+ A +  + + +  F  +T
Sbjct: 121 GAFKFFTSYALKTFDGSR--FLEGYEERVATTALYLAQGDEELAEKLVDGIMTGRFQPAT 178

Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  +  ++ SCFL  + D+L  I   +     L+K  GG+    + +R  GA I
Sbjct: 179 PTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPI 238

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ 
Sbjct: 239 KKIENQASGVVPVMKILEDSFSYANQLGSRQGAGSVYLHAHHPDILRFLDTKRENADEKV 298

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+       I
Sbjct: 299 RIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANPRI 357

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------ 588
                I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI      
Sbjct: 358 S-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVNTP 414

Query: 589 -TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            T  +S + T V     CNLGS+N+   F +  F       T+ TAVR L  V D+ N  
Sbjct: 415 STYGASGDYTTVGQDISCNLGSLNIAKAFESPDF-----GETVETAVRALTKVSDLTNIE 469

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  L
Sbjct: 470 AVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHAL 529

Query: 702 AQERGA-YSSFKGSLWDQGVF---PID-----SIGLLAEVRDELAMNRTSRLPWDELKKR 752
           A E+G  ++ F+ S +  G +    ID     +   + ++  E  +    R  W  LK  
Sbjct: 530 AVEKGQRFTGFEESTYATGAYFDKYIDQDWAPTTEHVKQLFHEAGVQIPQREDWLRLKNL 589

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELK 811
           V   G+ N+   A+ PT +I+ I   + SI P    + + K    G        + N+  
Sbjct: 590 VMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAPEMTND-- 647

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                      +L+Y D S              +A  +E     +I++ +   + +DQ  
Sbjct: 648 -----------NLEYFDDS--------------YAVGYE----KIIDTYAMATQHVDQGL 678

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SL L+   + + + ++     AW  G+KT YY+R R      +S L+G +
Sbjct: 679 SLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLR------QSALQGTE 722


>gi|228904847|ref|ZP_04068901.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228854861|gb|EEM99465.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 635

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 171/651 (26%), Positives = 292/651 (44%), Gaps = 70/651 (10%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y   F F+ Y+     Y  Y L  +  +I + + +  R A+      +   K+A+ + N 
Sbjct: 18  YTHKFEFQSYMAATKFYKDYSLRSDDKKIYL-EDYEDRAAIVALYLASGNTKKALRYVNQ 76

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +   ++  +TPT  NSG  R  +L SCFL  + D L  I   L     L+K  GG+  + 
Sbjct: 77  IMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVAKQLSKIGGGIAINL 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +RG    I G    + GV+P +K+  D+   +NQ G+R GA  AYL  +H D+ EFLD
Sbjct: 137 SKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAAYLNIFHWDLIEFLD 196

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++     P  F +   QN    LF+P  V   + ++  + ++  + 
Sbjct: 197 SKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKAYGVHLDDMDLDEKY 256

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K    ++A  +  K+ T+  E+G+P+   K   N + P + +G V  SNL
Sbjct: 257 DELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQHPLKDLGGVKMSNL 316

Query: 585 CTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           CTEI       ET+V               C LGS+N++     N  +   +   + T +
Sbjct: 317 CTEIF---QYMETSVINDYNIADWIKNDISCVLGSLNIV-----NVMENKDVKEAVHTGM 368

Query: 630 RVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +L +V D +C  IE A   KK+N T  ++GLG M     L    IPY S +A + A   
Sbjct: 369 EMLTDVTDKSC--IENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDFARVF 426

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSR 743
              +++H+I  S E+A+ERG ++  F+ S + +G +     +   L +      +    +
Sbjct: 427 FAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLFEGIQ 486

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           +P    W+ L K+V+  G+ +S  +AIAP  +     G  Q+  PS   +  K       
Sbjct: 487 IPTTADWERLMKQVQRDGLYHSYRLAIAPNQS----SGYVQNATPSVMPIVDKVETRSTD 542

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                + +  L ++  +                            + +A+E+D M +I+ 
Sbjct: 543 KATTYYPMPYLSKQTFFS---------------------------YKSAYEMDQMKVIDL 575

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +  Q  +DQ  S  L++ +  S + L   Y  A   GLK+ YY R+ ++T
Sbjct: 576 IAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 626


>gi|144575329|gb|AAZ53595.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 7448]
          Length = 720

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 164/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYER 527
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F +I+  ENY +
Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQ 334

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                EIK    ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+E
Sbjct: 335 MLANPEIKK-TFISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCSE 391

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           IT  S+              +   CNLGS+N+     +   D++++      A+ V+   
Sbjct: 392 ITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSRN 450

Query: 636 IDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F A
Sbjct: 451 SDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSA 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP- 745
             AS +LA++ G +S F+ + +  G        V P   +    +++ EL       +P 
Sbjct: 508 FKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIPT 566

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++          
Sbjct: 567 QEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 617

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857
                                    +G +G I     +  P   K     A+E+ P+ +I
Sbjct: 618 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 652

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 653 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702


>gi|308235082|ref|ZP_07665819.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14018]
          Length = 698

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 174/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%)

Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F + A  +AL+  +  EK A+ + + + +  F  +TPT  N G  +  +  SCFL  + D
Sbjct: 105 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 164

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    
Sbjct: 165 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 224

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +   
Sbjct: 225 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 284

Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP    D+   YGK F +I+  E+Y+       I   + I A   +  +  + FE+
Sbjct: 285 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 340

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI       T N+    + V     CNLGS
Sbjct: 341 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 398

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D D L +++  AVR L +V +  +  ++   ++ N    AIGLG M  
Sbjct: 399 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 452

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718
              L   H+ Y S EA++  D     +++HA  AS  LA ERG A++SFK S + +    
Sbjct: 453 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAYAKPAGK 512

Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767
              F   + G  +      +VRD  A    + +P    W++L+  +   G+ N    A+ 
Sbjct: 513 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILRDGIYNEYLQAVP 571

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + + K    G      +++ N+                 
Sbjct: 572 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 614

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                 N++   D        A+EI    +I++ +   + +DQ  SL L+  D  + + L
Sbjct: 615 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 660

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+KT YY+R R   ++E + ++G
Sbjct: 661 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 692


>gi|23335915|ref|ZP_00121146.1| COG0209: Ribonucleotide reductase, alpha subunit [Bifidobacterium
           longum DJO10A]
 gi|23465252|ref|NP_695855.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum NCC2705]
 gi|189440324|ref|YP_001955405.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum DJO10A]
 gi|227547059|ref|ZP_03977108.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|296455121|ref|YP_003662265.1| ribonucleoside-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. longum JDM301]
 gi|312133658|ref|YP_004000997.1| nrda [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690139|ref|YP_004209873.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis 157F]
 gi|23325883|gb|AAN24491.1| NrdE [Bifidobacterium longum NCC2705]
 gi|189428759|gb|ACD98907.1| Ribonucleotide reductase alpha subunit [Bifidobacterium longum
           DJO10A]
 gi|227212476|gb|EEI80365.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517760|emb|CBK71376.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|296184553|gb|ADH01435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311772920|gb|ADQ02408.1| NrdA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320461475|dbj|BAJ72095.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 731

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E++A+E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             L  T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAMDGG------LGHTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  + + +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744
            AS  LA E G  ++SF  S + +     +      + R  L   RT R+          
Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576

Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + ++       
Sbjct: 577 IPTAADWEALRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                             E  I  + Y    + N     D+L   +  A+EI    ++++
Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|197104081|ref|YP_002129458.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
 gi|196477501|gb|ACG77029.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
          Length = 745

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 232/509 (45%), Gaps = 71/509 (13%)

Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
           L  +I   +Y F   +G+     +A + RVA  +A  E+ K +RA    F + L  F F+
Sbjct: 7   LAAEIWSGKYRFAQPDGAGDGSVEATWARVAEAIARAESPKLRRAWRERFEDALGDFQFL 66

Query: 353 CSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L  +GT R   L +CF +  +PDDL GIF  +QE A+  +  GG+G D++ +R  
Sbjct: 67  PAGRILAGAGTARTVTLFNCFVMGAIPDDLEGIFRHVQEAAVTMQQGGGVGMDFSTIRPS 126

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G    + G + F+ V +     +   G+R+GA+   L   H D+E F+D ++   
Sbjct: 127 GAPVRGVGADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 183

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  R  + N +  + D F++ + ++  W L   D V                       
Sbjct: 184 -DGARLRNFNLSVLVTDAFLETLERDGEWPLVF-DGV----------------------- 218

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                V R + A  LWR+++   ++   P + F D  N R+   H   + +SN C E  L
Sbjct: 219 -----VHRTVRAADLWRRLMQGTYDCAEPGVIFIDRVNARNNLAHCETITASNPCGEQML 273

Query: 591 NSSSEETAVCNLGSINLL----AHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                    C LGSINL     A F    + D D+LA+  RTAVR LDNVID++ + +  
Sbjct: 274 ----PPYGACLLGSINLARLVPAPFEPGAELDEDRLAALTRTAVRFLDNVIDVSRYPLPA 329

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R IGLG+ G   AL    +PY    + E+    +E I   A  AS ELA E+
Sbjct: 330 QEAEAKAKRRIGLGVTGLADALIFCGVPYGGERSAELTRRWLEVIKREAYRASAELAAEK 389

Query: 706 GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           GA+      L+D  +    ++ GL  E R+ +A +                 G+RN    
Sbjct: 390 GAF-----PLYDPVMLETPNLKGLDPETRELIARH-----------------GLRNGCLT 427

Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVK 792
           +IAPT T + + G VS  I+P +   Y +
Sbjct: 428 SIAPTGTTSLLAGNVSSGIEPVFAFAYTR 456


>gi|144227518|gb|AAZ44306.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae J]
          Length = 720

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F    I+ + Y+
Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K F  ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+
Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EIT  S+              +   CNLGS+N+     +   D++++      A+ V+  
Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSR 449

Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F 
Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506

Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRT---S 742
           A  AS +LA++ G +S F+ + +  G        V P   +    ++++  A  +    +
Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPT 566

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++          
Sbjct: 567 QKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 617

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857
                                    +G +G I     +  P   K     A+E+ P+ +I
Sbjct: 618 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 652

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 653 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702


>gi|311115216|ref|YP_003986437.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
 gi|310946710|gb|ADP39414.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
          Length = 740

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 174/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%)

Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F + A  +AL+  +  EK A+ + + + +  F  +TPT  N G  +  +  SCFL  + D
Sbjct: 147 FAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 206

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    
Sbjct: 207 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 266

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +   
Sbjct: 267 NQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 326

Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP    D+   YGK F +I+  E+Y+       I   + I A   +  +  + FE+
Sbjct: 327 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTLAEIQFES 382

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI       T N+    + V     CNLGS
Sbjct: 383 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 440

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D D L +++  AVR L +V +  +  ++   ++ N    AIGLG M  
Sbjct: 441 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 494

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718
              L   H+ Y S EA++  D     +++HA  AS  LA ERG A++SFK S + +    
Sbjct: 495 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAYAKPAGK 554

Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767
              F   + G  +      +VRD  A    + +P    W++L+  +   G+ N    A+ 
Sbjct: 555 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILRDGIYNEYLQAVP 613

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + + K    G      +++ N+                 
Sbjct: 614 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 656

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                 N++   D        A+EI    +I++ +   + +DQ  SL L+  D  + + L
Sbjct: 657 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 702

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+KT YY+R R   ++E + ++G
Sbjct: 703 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 734


>gi|3183696|emb|CAA07028.1| ribonucleotide reductase large subunit [Felid herpesvirus 1]
          Length = 785

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 181/666 (27%), Positives = 303/666 (45%), Gaps = 80/666 (12%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-----FYNLLS 347
           LGLQ  + Y+  +L ++    +E    FF+R+A   A   T + ++A+      ++ +  
Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192

Query: 348 SFHFMCS-------TPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398
           SF F  S       TP +   G     L+SC+L +  + D    I   +++ A +    G
Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252

Query: 399 GLGNDWTPVRGLGAHIHGTNGK-----SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           G+G            +   N K     ++GV+P LK+ +   +A++   +R   VC Y+E
Sbjct: 253 GIG----------ICLQNFNKKLSKECTKGVLPLLKLLDSMTIAISDS-ERPTGVCIYVE 301

Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDE 506
            WH D+   L++R     D+  R  ++ +  W PDLF  R  ++ G      WTLF  D 
Sbjct: 302 PWHADIRSILNMRGMLASDEDSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFD-DA 360

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            S L  LYGKEF   YE  E  A  G   +  +  A  + R  +     TG P++ FKD 
Sbjct: 361 ESHLSKLYGKEFNEEYERLE-AAGMGVDSLPIQEMAYLIVRSAIM----TGSPFLMFKDA 415

Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQFDYDKLA 622
           CN        G  + +SNLCTEI   ++     VCNL SI+L   L   A++Q  Y  + 
Sbjct: 416 CNRHYHFDTRGDALTTSNLCTEIIQKATDTRRGVCNLISIDLPRCLRRIAHDQSLYFSIP 475

Query: 623 STIR---TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             IR   TA   ++ ++       E   +    +R++GLG+ G  +    L +   S EA
Sbjct: 476 LLIRAAYTATIFVNPMMRAGNFPTEATMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEA 535

Query: 680 VEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             +  + +E +   +I AS  L +     + +F+ S++ +G+ P D+      +  +   
Sbjct: 536 RRLNPQILESLLLGSIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFK--- 592

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W +L+  +   G+ NS  +A+ PT + + +   S+   P + NL+ K   +G+
Sbjct: 593 ------KWQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGE 646

Query: 799 FTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFE 850
               N  L+  +++   R+    A+IS L+    SI        DL   H      TAFE
Sbjct: 647 ILRPNLQLMRTIRRLFPRECARLAVISTLEAAQWSIRGAF---GDLGDYHPLAKFKTAFE 703

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLR 904
            D   LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY +
Sbjct: 704 YDQRQLIDMCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCK 763

Query: 905 SRSATS 910
            + AT+
Sbjct: 764 LKKATN 769


>gi|239622881|ref|ZP_04665912.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239514878|gb|EEQ54745.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 731

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 179/660 (27%), Positives = 292/660 (44%), Gaps = 84/660 (12%)

Query: 295 YLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           +LG    Y  Y L     R+   + PQ     VA+ LA      E++A+E+ + + +  F
Sbjct: 114 FLGAFKFYTSYALKTFDGRLYLEDFPQRC-AAVALELA---AGNEQQAIEYADEMLAGRF 169

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R L
Sbjct: 170 QPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREL 229

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 230 GAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENA 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQ 528
           D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F +I+  E+Y+  
Sbjct: 290 DEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDEM 346

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK    I A   +  +  + FE+G+P+I F+D  N  +P +  G V  SNLC+EI
Sbjct: 347 VADDRIKK-TYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIE--GRVTMSNLCSEI 403

Query: 589 TL----NSSSEETAV--------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 ++ +E+           CNLGS+N+             L  T+ TA+R L +V 
Sbjct: 404 LQVQEPSAYNEDLTYAHVGRDISCNLGSLNIAKTMDGG------LGHTVETAIRALTSVA 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  + + +   +++N    AIGLG M     L    I Y S E ++  D     +++HA 
Sbjct: 458 EHTSINAVPSIRRANEEGHAIGLGQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL---------- 744
            AS  LA E G  ++SF  S + +     +      + R  L   RT R+          
Sbjct: 518 RASHALAVEHGRTFASFATSDYAKPAGQGNYFDKYTDGRRSLT-PRTERVRALFEQYGIA 576

Query: 745 -----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + ++       
Sbjct: 577 IPTAADWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK------ 630

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                             E  I  + Y    + N     D+L   +  A+EI    ++++
Sbjct: 631 ------------------EGKIGRVYYPAAYMTN-----DNL-GYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQG 725


>gi|71893571|ref|YP_279017.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae J]
          Length = 713

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 270/590 (45%), Gaps = 79/590 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 151 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 211 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F    I+ + Y+
Sbjct: 271 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K F  ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+
Sbjct: 328 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 383

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EIT  S+              +   CNLGS+N+     +   D++++      A+ V+  
Sbjct: 384 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEEMVYYSVLALDVVSR 442

Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F 
Sbjct: 443 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 499

Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRT---S 742
           A  AS +LA++ G +S F+ + +  G        V P   +    ++++  A  +    +
Sbjct: 500 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPT 559

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++          
Sbjct: 560 QKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK--------- 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWLI 857
                                    +G +G I     +  P   K     A+E+ P+ +I
Sbjct: 611 -------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPII 645

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 646 NIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 695


>gi|126737397|ref|ZP_01753132.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
 gi|126721982|gb|EBA18685.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
          Length = 765

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 166/609 (27%), Positives = 271/609 (44%), Gaps = 88/609 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I++  +  + R+A  LA  E + E    +FY  L  F ++ +      +GT 
Sbjct: 19  FKQADGTPIDVTVEDSWRRIARDLARAEQDPEAWEGKFYEALEDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W L            +G                   KV+  + A
Sbjct: 195 VLVTDDFMEAVKADGSWEL-----------QFGG------------------KVYHTVEA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F D  N  +   +V  + ++N C E  L         C L
Sbjct: 226 RDLWNKIMQATYDFAEPGVIFIDRINKANNLSYVEDICATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSIN+ A   +N F+       + +   + TAVR++DNV+D++   +E   +     R I
Sbjct: 282 GSINM-ARLVSNPFEKNAGLNQEAMQELVATAVRMMDNVVDVSKFPLEAQAQEAQNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMLGLEYGSDEAARQTDEWLHGIARAAYLASVELAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                  D+   LA   + L M+       +++++ ++T G+RN+   +IAPT TI+   
Sbjct: 396 -------DADAYLAS-GNMLNMD-------EDVREAIRTHGIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           G VS  I+P +   Y +  +  D +     +V+   Q  ++ E   +D K          
Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK---------- 488

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                L      A  + P   ++  +  QKWID + S  +   E  S      +Y QAW 
Sbjct: 489 -----LPGFFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQAWD 543

Query: 895 MGLK--TTY 901
            G K  TTY
Sbjct: 544 QGCKGCTTY 552


>gi|240950329|ref|ZP_04754599.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
 gi|240295140|gb|EER45959.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
          Length = 554

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 259/591 (43%), Gaps = 114/591 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGFADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSGYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+                 N I  L    V     W                
Sbjct: 169 HGDIDEWLDIH-------------TEGNPI-QLMYYGVCVGREWL--------------- 199

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            E   A + Y+RQ                LW K+L    ETG P++ FKD  N   P  +
Sbjct: 200 -ESMKAGDPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L S+SEE+ VC L S+NLL         +D+   T   A  VL
Sbjct: 243 KDKNMTVHASNLCTEIMLPSNSEESFVCCLSSMNLLY--------FDEWKDT--DAPEVL 292

Query: 633 DNVIDI-NCHTIEKAK---------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +D+     IEK+K         K    HRA+GLG++G+ S L   +IP+ S EA++ 
Sbjct: 293 TYFLDVVMSEFIEKSKDIPFLHRATKFAIRHRALGLGVLGWHSYLQSNNIPFDSFEAMQK 352

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            +   + +    + AS ELAQ  G     KG                             
Sbjct: 353 NNLIFKTLQEKTLKASQELAQRFGEPELLKG----------------------------- 383

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV 801
                         G RN+  M+IAPT + + I G VS S++P   N YVK         
Sbjct: 384 -------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVY 430

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
            N FL   LK++ L  E +   + + DGS+ ++E++ +  K +  T  EI  + +I+ A+
Sbjct: 431 KNPFLEKLLKEKGLDKEEIWESILHTDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAA 490

Query: 862 RRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +RQK+IDQ QS+NL +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 491 QRQKYIDQGQSINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541


>gi|291295356|ref|YP_003506754.1| ribonucleoside-diphosphate reductase subunit alpha [Meiothermus
           ruber DSM 1279]
 gi|290470315|gb|ADD27734.1| ribonucleoside-diphosphate reductase, alpha subunit [Meiothermus
           ruber DSM 1279]
          Length = 691

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 166/646 (25%), Positives = 295/646 (45%), Gaps = 64/646 (9%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F+ ++ +   Y  Y L  +  ++ + + F   +A+ L L + + +K A  +   +   
Sbjct: 81  FRFQSFMAVSKFYKDYALKSDDKKLYLERYFERVLAVALHLGQGDVQK-AEAYVRAMMEQ 139

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +L SCFL  + D L  I   L     L+K  GG+  + + +R
Sbjct: 140 RYQPATPTFLNAGRARRGELVSCFLLELDDSLNSIGYNLNAAMQLSKIGGGVALNLSKLR 199

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G    ++GV+P  K+  D     +Q G+RKGA   YL  +H DVEEFLD +K 
Sbjct: 200 ARGEPIKGVAHAAKGVVPVAKLLEDAFNYADQMGQRKGAGAVYLNIFHWDVEEFLDTKKI 259

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +P  F         + +F+P  V      +  + ++    YE  
Sbjct: 260 NADEKSRLQTLSLGLLVPQKFFDLAEAGEDFYVFAPYSVYRAFGEHLDDMDLD-RMYEAL 318

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               E+K  R +SA  +  ++    FE+G+P+I ++   N + P + +G +  SNLCTEI
Sbjct: 319 VAHPEVKK-RPLSARQMLTRIAQTQFESGYPYIVYRSNANRQHPLKALGQIKMSNLCTEI 377

Query: 589 ------TLNSSSEETA------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                 TL   + E         CNLGS+N++     N  +   LA ++ TA+  L  V 
Sbjct: 378 FQLQTPTLVGDAGEVVEAGFDISCNLGSLNIV-----NVMEQQNLAESVHTAMDALTAVS 432

Query: 637 DINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D +    +    ++N    ++GLG+M     L    I Y S EA +        ++++++
Sbjct: 433 DASAVRQVPGVWRANQAFHSVGLGVMNLHGFLAKNQIRYESEEARDFVRSFFAAMNYYSL 492

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDE 748
             S+E+A+ERG  +  F+ S +  G +  +        R E        +P      W  
Sbjct: 493 ERSMEIARERGQTFHGFEQSEYASGRY-FEKYQEDFRPRTETVRKLFEGIPLPSPADWAR 551

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V+  G+ ++  +A+APTA+I+ I   + SI P  +  +V++   G+ T    + + 
Sbjct: 552 LKEAVEQHGLYHAYRLAVAPTASISYIQNATPSIQPIVE--HVETRTYGNATTY--YPMP 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L +   W                            + +A+ ++   +I+  +  Q+ +D
Sbjct: 608 FLSEETYW---------------------------FYKSAYHMNMYRVIDLVAEAQQHVD 640

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           Q  S  L++  E S ++L  +Y  A   GLK+ YY R+++  SVE+
Sbjct: 641 QGISTVLFVTSETSTRELARLYVYAAKKGLKSLYYTRTKN-LSVEE 685


>gi|21228932|ref|NP_634854.1| ribonucleoside-diphosphate [Methanosarcina mazei Go1]
 gi|20907466|gb|AAM32526.1| Ribonucleoside-diphosphate [Methanosarcina mazei Go1]
          Length = 553

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 174/631 (27%), Positives = 285/631 (45%), Gaps = 104/631 (16%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F+ L ++ L  RY         ++ +    RVA  +AL   E      EF +++ S  F+
Sbjct: 8   FDLLAIETLKSRYLQEGEKDWEDVCK----RVAKAIALNRGE----YTEFLDIILSKAFI 59

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            S+PTL N+GT   QLS+CF+  V D +  IF +++  A++ K  GG G +++ +R  G+
Sbjct: 60  PSSPTLMNAGTPSGQLSACFVIPVEDGIEKIFDSVKTAALIQKTGGGTGFNFSKIRPDGS 119

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
                 G + G +  +++ N+    V   GKR+GA    L+  H D+  F+  ++  G  
Sbjct: 120 VTVSGVGTASGPVALMRLFNEATEIVKHFGKRRGANMGILDISHNDIISFIRAKRTEG-- 177

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  + D FM    +         DEV                N E     G
Sbjct: 178 --VLSNFNISVMLTDSFMSLADEG------RMDEVW---------------NTETGTKIG 214

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           EI  F +I    +WR         G P + F D  N  +    +G + ++N C E  L  
Sbjct: 215 EI--FSEIVE-GIWR--------NGEPGVLFYDHINRDNFTPALGDISATNPCGEEPLLP 263

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNLGSINL       + + D L   +R AVR LDN ID+N + + + +K+   
Sbjct: 264 FES----CNLGSINLSILVEEGKVNRDSLREAVRKAVRFLDNEIDVNVYPVPEIEKATKK 319

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG+MGF   L  L +PY S EA+ +A++ M  I+  AI  S +LA E+G +  ++
Sbjct: 320 TRKIGLGVMGFHDMLLKLGLPYDSEEALRLAEKLMGQINRAAIRESEKLAAEKGPFPEYE 379

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S+W+   FP+                                   RN+   AIAPT TI
Sbjct: 380 NSIWE---FPV-----------------------------------RNATLTAIAPTGTI 401

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQR-DLWDEAMISDLKYHDGS 830
           + + G S  I+P +  +Y ++ ++G +F +V+       KQ+    D   + +  Y  G+
Sbjct: 402 SILAGCSAGIEPVFSWVYRRARIAGKEFMLVHPLFETHFKQKLSKPDYNRLLEHVYAHGT 461

Query: 831 IGNI---ERIPDDLKKIHATAFEIDPMWL----IESASRRQKWIDQAQSLNLYLD---EP 880
           + +I   + + ++ K +  +A +I+  W     I++A +R      ++++N+ +D   E 
Sbjct: 462 LQDITDSKIVSEEEKGLFRSALDIN--WKTHIDIQAAFQRHCHAGISKTINMPVDAGKED 519

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            GK L  IY  AW  GLK     R+ S   V
Sbjct: 520 IGKAL--IY--AWKQGLKGLTIYRTGSRQHV 546


>gi|291280756|ref|YP_003497590.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
 gi|290755458|dbj|BAI81834.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
          Length = 868

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 154/579 (26%), Positives = 269/579 (46%), Gaps = 86/579 (14%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           K+ V ++NL++   FM ++P L N+ + +   S+CF+  + D +  IF  L+  A++ K 
Sbjct: 103 KKYVTYFNLMAQGIFMPNSPLLVNADSNNMCYSACFVLDIDDSMESIFETLKNTALIHKS 162

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG G +++ +R  GA +  T G+S G + F+++ N     V QGG R+GA    L   H
Sbjct: 163 GGGTGFNFSKLRQKGALVSSTKGESSGALSFMQIYNSATEHVKQGGVRRGANMGILNVDH 222

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEF+ +++    D +   + N +  I + F++ +  +  W L  P+           
Sbjct: 223 PDIEEFIKIKR----DNKTLTNFNISVGITNKFLEAIKNDEEWELKEPNTG--------- 269

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                             KV +K+ A  L+ +++   +  G P +   D  N  +  +++
Sbjct: 270 ------------------KVIKKVRAKQLFDEIVKSAWICGDPGLLNIDTINKYNYLKYI 311

Query: 577 -GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAV 629
            G + ++N C E  L  +      CNLGSINL A F       N  FD D  A  +    
Sbjct: 312 KGNITATNPCGEQPLFPNE----ACNLGSINL-AKFVKSDAHNNAYFDIDAFAKVVEDCT 366

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             LD+VIDIN + + +  ++    R IGLG+MGF  AL  + I Y S EA+ + D     
Sbjct: 367 HFLDDVIDINNYPLPQITEAVEETRKIGLGVMGFADALIKMGISYDSNEALTMIDSVGSV 426

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +      AS++  ++              GVFP+ +  LL +V+     N+ SR  +  +
Sbjct: 427 LKEKTEEASIKYGEQY-------------GVFPL-ADKLLEKVKKLYKENKISRKEYTYI 472

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K   K I  RN++   IAPT TI+ I G S  I+P +   Y++ +  G            
Sbjct: 473 KD--KYIKRRNASLTCIAPTGTISLIAGCSSGIEPLFSLGYIREDSFG------------ 518

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
              R +W++++   +  ++        IP+ +K    TA +I P W ++  S+ Q++++ 
Sbjct: 519 --TRIVWNDSVKHFVDKNN--------IPEYVK----TAMDISPDWHLKIQSKWQEYVES 564

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           A S  + L E + ++ +  IY +A  +  K     R +S
Sbjct: 565 AVSKTINLPETATEEDIANIYLKAMELNCKGITVYRDKS 603


>gi|54020061|ref|YP_115672.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 232]
 gi|53987234|gb|AAV27435.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 232]
          Length = 720

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 269/591 (45%), Gaps = 81/591 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F    I+ + Y+
Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K F  ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+
Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EIT  S+              +   CNLGS+N+     +   D++++      A+ V+  
Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEQMVYYSVLALDVVSR 449

Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F 
Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506

Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP 745
           A  AS +LA++ G +S F+ + +  G        V P   +    +++ EL       +P
Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIP 565

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++         
Sbjct: 566 TQEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK-------- 617

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWL 856
                                     +G +G I     +  P   K     A+E+ P+ +
Sbjct: 618 --------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPI 651

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 652 INIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702


>gi|326692190|ref|ZP_08229195.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           argentinum KCTC 3773]
          Length = 723

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 167/645 (25%), Positives = 294/645 (45%), Gaps = 83/645 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N  +  + + +  RVAM         E  A+   + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGQYYV-ETYIDRVAMNALYYAAGNEALALRLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + +R  GA + G   
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNLREAGAPVMGIAN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 SAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKENADEKIRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKV 536
           +    +PD F + V +N    LFSP   +D+  +YG  F   +I  E Y+      +I  
Sbjct: 283 SLGLTVPDKFYELVRKNEDMYLFSP---ADVEKVYGVPFNYVDITAE-YDNMVANDQITK 338

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------T 589
           +R ++A  L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+EI        
Sbjct: 339 YR-LNARTLEEEISKLQQESGYPYILNVDVTNRANPI--AGKIVSSNLCSEILQVQTPSE 395

Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643
           L++  + T +     CNLGSIN++   A   F+     +++ T VR L  V D  N   +
Sbjct: 396 LDNGQQYTRLGSDVSCNLGSINIVNMMATPDFE-----TSVDTMVRALTFVSDTSNLDVV 450

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               K N    AIGLG MG  +      + Y    +++        +++++I AS++LA+
Sbjct: 451 PSIAKGNQEKHAIGLGAMGLAAYFAQNQMYYGDEASLDFTSTFFMTLNYYSIKASMKLAK 510

Query: 704 ERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTI 756
           ER   +  F  S +  G +       D      +V D  A +   ++  W ELK+ V   
Sbjct: 511 ERQEKFFEFDKSTYADGSYFDKYLTQDWTPKTPQVADAFANHHVPTQRDWLELKENVMKY 570

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           GM ++   AIAPT +I+ +   + ++ P                     +VN++++R   
Sbjct: 571 GMYHAYRHAIAPTGSISYVNDTTATLLP---------------------IVNKIEER--- 606

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E MI  + Y    + N E +P      + +A++ D   +I+  +  Q+ IDQ  +L L+
Sbjct: 607 QEGMIGKVYYPAPGLNN-ETMP-----YYVSAYDTDMRKVIDVYAAAQEHIDQGMALTLF 660

Query: 877 L----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +                ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 661 MRSTLSTALYEWKKGRTEKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|312601196|gb|ADQ90451.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 168]
          Length = 720

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 269/591 (45%), Gaps = 81/591 (13%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G     +  SC+L  V D++  I  A+  +  L+K  GG+    + +R 
Sbjct: 158 FQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++  
Sbjct: 218 QGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDILAFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYE 526
            D++ R   ++    IP++  +    N    LFS   V D+  +Y K F    I+ + Y+
Sbjct: 278 ADEKIRIKSLSLGIIIPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQ 334

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K F  ISA  L++ +  + FE+G+P+I F+D  N      H   V  SNLC+
Sbjct: 335 MLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFEDIVN--KENAHPDRVVMSNLCS 390

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EIT  S+              +   CNLGS+N+     +   D++++      A+ V+  
Sbjct: 391 EITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAMESGP-DFEQMVYYSVLALDVVSR 449

Query: 635 VIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             D++   +I+K    NH   AIGLG M     L    I Y S EA++  +     ++F 
Sbjct: 450 NSDLSVAPSIQKGNNLNH---AIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFS 506

Query: 694 AISASVELAQERGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDELAMNRTSRLP 745
           A  AS +LA++ G +S F+ + +  G        V P   +    +++ EL       +P
Sbjct: 507 AFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPNTFLPKTHKIK-ELFAKYQVEIP 565

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  L +++K  G+ NS+ MAIAPT +I+ +   + S+ P    + ++         
Sbjct: 566 TQEDWIHLIEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRK-------- 617

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-----ERIPDDLKKIHATAFEIDPMWL 856
                                     +G +G I     +  P   K     A+E+ P+ +
Sbjct: 618 --------------------------EGKLGRIYVPSYKLSPKTYKFYQNGAYELGPIPI 651

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+ YY+R R
Sbjct: 652 INIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKSIYYVRIR 702


>gi|54026278|ref|YP_120520.1| ribonucleotide-diphosphate reductase subunit alpha [Nocardia
            farcinica IFM 10152]
 gi|54017786|dbj|BAD59156.1| putative ribonucleoside-diphosphate reductase alpha subunit [Nocardia
            farcinica IFM 10152]
          Length = 1102

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 161/584 (27%), Positives = 254/584 (43%), Gaps = 75/584 (12%)

Query: 364  RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            R   + +CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S G
Sbjct: 559  RGAVVHNCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSG 618

Query: 424  VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            VIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 619  VIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGV 678

Query: 484  WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKIS 541
             IPD+  +   +N    LFSP    D+  +YGK F      E Y    D   I+   KI 
Sbjct: 679  VIPDITFELAKKNEDMYLFSP---YDVERIYGKPFADIDVTEKYYEMVDDKRIRK-SKIK 734

Query: 542  AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596
            A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S+  E     
Sbjct: 735  AREFFQTIAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSEFNDDL 792

Query: 597  -------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKK 648
                      CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++
Sbjct: 793  SYAKVGKDISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQ 847

Query: 649  SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             N    AIGLG M     L    I Y S E ++  +     + +HA+ AS  LA ERG Y
Sbjct: 848  GNQQSHAIGLGQMNLHGYLARERIHYGSDEGIDFTNMYFYTVVYHALRASNRLAIERGTY 907

Query: 709  -SSFKGSLWDQGVFPIDSIGLLAEVRDE----LAMNRTSRLP----WDELKKRVKTIGMR 759
               F  S +  G +       + E + E    L  +   R+P    W ELK  V   G+ 
Sbjct: 908  FGGFPESKYASGEYFDKYTEQVWEPKTERVRQLFADAGVRIPTQDDWRELKASVMEHGIY 967

Query: 760  NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
            N N  A+ PT +I+ I   + SI P    + ++                           
Sbjct: 968  NQNLQAVPPTGSISYINHSTSSIHPVASKIEIRK-------------------------- 1001

Query: 820  MISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    +G IG +      + +D  + +  A+EI    +I++ +   + +DQ  SL L
Sbjct: 1002 --------EGKIGRVYYPAPYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTL 1053

Query: 876  YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  D  + + L+     AW  G+KT YY+R R   ++E + ++G
Sbjct: 1054 FFKDTATTRDLNKAQIYAWRKGIKTLYYIRLRQ-MALEGTEVEG 1096


>gi|283782687|ref|YP_003373441.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
 gi|283441659|gb|ADB14125.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
          Length = 741

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 173/633 (27%), Positives = 291/633 (45%), Gaps = 80/633 (12%)

Query: 321 FMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
           F + A  +AL+  +  EK A  + + + +  F  +TPT  N G  +  +  SCFL  + D
Sbjct: 148 FAQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLED 207

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    
Sbjct: 208 NMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYA 267

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +   
Sbjct: 268 NQLGARQGAGAVYISAHHPDIMRFLDAKRENADEKIRIKSLSLGVVIPDITFELAKRKEK 327

Query: 499 WTLFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             LFSP    D+   YGK F +I+  E+Y+       I   + I A   +  +  + FE+
Sbjct: 328 MALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHK-KYIDAREFFMTIAEIQFES 383

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI       T N+    + V     CNLGS
Sbjct: 384 GYPYILFEDTVNRTNPIE--GRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGS 441

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D D L +++  AVR L +V +  +  ++   ++ N    AIGLG M  
Sbjct: 442 LNIA-----KAMDGD-LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNL 495

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ---- 718
              L   H+ Y S EA++  D     +++HA  AS  LA ERG A+++FK S + +    
Sbjct: 496 HGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFANFKTSAYAKPAGK 555

Query: 719 -GVFPIDSIGLLA------EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIA 767
              F   + G  +      +VRD  A    + +P    W++L+  + + G+ N    A+ 
Sbjct: 556 GNYFDKYTDGSRSLEPKTQKVRDLFARFNVA-IPTVSDWEQLRDEILSDGIYNEYLQAVP 614

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + + K    G      +++ N+                 
Sbjct: 615 PTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTND----------------- 657

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                 N++   D        A+EI    +I++ +   + +DQ  SL L+  D  + + L
Sbjct: 658 ------NMQYFKD--------AYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDL 703

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +     AW  G+KT YY+R R   ++E + ++G
Sbjct: 704 NKAQIYAWRKGIKTLYYIRIRQ-KALEGTEIEG 735


>gi|15829012|ref|NP_326372.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089956|emb|CAC13714.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 711

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 182/692 (26%), Positives = 312/692 (45%), Gaps = 86/692 (12%)

Query: 254 EYFCRYIEEGVKARLLHESMMD-FDLVYLA--NDLKYERDFAF-EYLGLQILYDRYFLHI 309
           E F + IE  VK     +S++D + +  L   NDL Y  +  F  ++G+   Y+ Y L  
Sbjct: 50  ESFEKRIEFLVKNNYYEKSLIDQYTISQLKELNDLAYSYNHFFPSFMGILKFYNAYALKS 109

Query: 310 NGSRIEMPQAFFMRVAMG---LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRH 365
              + E  + F  R  M    LA  + EK K  ++   L     F  +TPT  N+G  + 
Sbjct: 110 FDGK-EYLENFEDRALMNALFLANGDFEKAKAILKEIMLK---RFQPATPTFLNAGKAQR 165

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +  SC+L    D++  I  ++  +  L+K  GG+    T +R LGA I     ++ G+I
Sbjct: 166 GEYVSCYLIRTEDNMESISRSITTSLQLSKRGGGVAVLLTNLRELGAPIKNIQNQATGII 225

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G+R+GA   YL   H D+ +FLD ++   D++ R   ++    +
Sbjct: 226 PIMKILEDSFSYANQLGQRQGAGAVYLNIHHPDILQFLDSKRENADEKIRIKSLSLGLVV 285

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D+  +    N    LFSP ++   +     +  I  E Y    +    K +  I+A  L
Sbjct: 286 TDIAFELAKNNEKLALFSPYDIQKEYKKPMSDISITQEYYNLLKNDKIKKTY--INARKL 343

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------ 599
           +  +  + FE+G+P++ F D  N R+   H   +  SNLC+EI   S++ E +       
Sbjct: 344 FTLIAELHFESGYPYLLFDDTVNRRNA--HPNRIVMSNLCSEIVQPSTASEYSADLSYTK 401

Query: 600 ------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+     + + ++  L +    A+  +    D+ +  +IEK    NH 
Sbjct: 402 VGDDISCNLGSLNIAKALESGR-EFKSLVANSIFALNQVSRKADLSSAPSIEKGNNKNH- 459

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF- 711
             AIGLG M     L    I Y S EA++  +     ++++A  AS EL+   G +  F 
Sbjct: 460 --AIGLGAMNLHGFLANNEIFYNSQEALDFTNMFFYAMAYYAFEASQELSLIYGKFHGFE 517

Query: 712 KGSLWDQGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           K    D   F   + G           + ++ ++      S+  W EL +++K  G+ NS
Sbjct: 518 KTKFADGSYFEKYTKGDENKWKAKTKKVQDILEKYDFYIPSQKDWIELVEKIKKTGIANS 577

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           + MAIAPT +I+ +   + S+ P                     +V  ++ R        
Sbjct: 578 HLMAIAPTGSISYLSSCTPSLQP---------------------VVAPVEAR-------- 608

Query: 822 SDLKYHDGSIGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                 +G +G +  +P      ++ K     A+E+ P+ +I+ A+  Q+ IDQA SL L
Sbjct: 609 -----KEGKLGRV-YVPAYNLNSNNFKYYIEGAYEMGPIPIIDIAAEAQQHIDQAISLTL 662

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +L D+ + + L+  Y  A+  G  + YY+R R
Sbjct: 663 FLTDKATTRDLNKAYIHAFKKGCSSIYYVRVR 694


>gi|224826411|ref|ZP_03699513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
 gi|224601512|gb|EEG07693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
          Length = 949

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 173/639 (27%), Positives = 290/639 (45%), Gaps = 78/639 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL- 380
           RVA  LA  E E  +    F++ L    F+        +GT     L +CF+  V D + 
Sbjct: 37  RVARALAGIEAEPARYEAAFFDALQR-GFIPGGRINSAAGTELKATLINCFVQPVGDAVS 95

Query: 381 ------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                  GI+ AL + A   +  GG+G +++ +R  GA + GT+ ++ G + +++V + +
Sbjct: 96  ESEGGKVGIYEALLQAAETMRRGGGVGYNFSRIRPKGARVKGTHSRASGPVSYMRVFDRS 155

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L   H DVE+F+   K+ GD      + N +  + D FM+ V 
Sbjct: 156 CETVESAGSRRGAQMGVLNIEHPDVEDFIHA-KDQGD----LKNFNISVGVSDAFMQAVE 210

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L     V    D + + F         + D G + V+R + A  LWR+++   +
Sbjct: 211 ADGPWQLVH--AVEPASDAFPEAF---------RRDDG-LWVYRTVRARELWRQIMESTY 258

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           +   P + F    N  +   +  V+ S+N C E  L     +   C+LGSINL A   + 
Sbjct: 259 DHAEPGVLFLSQINRDNNLSYCEVIESTNPCGEQPL----PDYGCCDLGSINLAAFVEHP 314

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +FD+    + +R+A+R+LDNV+D+    + + ++     R +GLG  G   AL L
Sbjct: 315 FTRRARFDFKAFETVVRSAIRMLDNVLDLTVWPLPEQQREAQAKRRVGLGFTGLGDALIL 374

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y SP+  ++A +  E +   A  ASV+LA E+GA+  F            D+   L
Sbjct: 375 LQIAYNSPQGRQMAAKFAETMRDAAYDASVDLAIEKGAFPLF------------DADNYL 422

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQ 787
           AE       +  SRLP + +K R++  G+RNS+ ++IAPT TI  A     S  I+P + 
Sbjct: 423 AEP------HCASRLP-EAIKARIRQHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +     D +           Q++   E     L   +G  G++E++P        +
Sbjct: 476 WYYTRKKRMADGS-----------QQEYRVEDHAYRLYRLNG--GDVEKLP----PYFVS 518

Query: 848 AFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYL 903
           A E+  +  ++  +    +ID A  +++N+  D P   + + +Y +AW  GLK  TTY  
Sbjct: 519 ALEMSALDHMQMVAAVAPYIDTAISKTVNVPADYPF-DEFEHLYLEAWKAGLKGITTYRP 577

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S   + +     +     L A    DP+     +  PS
Sbjct: 578 NSVLGSVLSVEPAQAAPQDLLASQEGDPDRRIALVSTPS 616


>gi|242372964|ref|ZP_04818538.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
 gi|242349290|gb|EES40891.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
          Length = 698

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 174/692 (25%), Positives = 300/692 (43%), Gaps = 86/692 (12%)

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            Y   F +Y EE ++        + F      +  K+ +D+A +        + Y  H+ 
Sbjct: 62  FYFNVFEKYTEESLREITEFAKSIHFQFASYMSASKFYKDYALKTNDKSQFLEDYNQHV- 120

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369
                        VA+ LA  +T   K+A +F + +    +  +TPT  N+G  R  +L 
Sbjct: 121 -----------AIVALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELV 166

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+P  K
Sbjct: 167 SCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAK 226

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                    +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F
Sbjct: 227 ALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKF 286

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
                +   + +F+P  V   + +   + ++  + Y+       I+  +K  A  +   +
Sbjct: 287 FDLAKEGKDFYMFAPHTVKQEYGVTLDDIDLE-KYYDDMVANPNIEK-KKKDAREMLNTI 344

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV--- 599
                ++G+P++ FKD  N      ++G +  SNLCTEI        +N    E  +   
Sbjct: 345 AQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRD 404

Query: 600 --CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
             CNLGS+N++     N  +  K   ++ T +  L  V D  N       KK+N    ++
Sbjct: 405 ISCNLGSLNIV-----NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSV 459

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG+M     L    I Y S EA + A+     +++++I  S+E+A+ERG  Y  F+ S 
Sbjct: 460 GLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGERYQDFESSD 519

Query: 716 WDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +  G +             + +  L E      ++  +   W  L+K V+  G+ ++  +
Sbjct: 520 YANGKYFEFYTSQEFEPQFEKVRQLFE-----GLDIPTSDDWKALQKEVEQYGLYHAYRL 574

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT +I+ +   + S+ P                     +V+++++R   +      +
Sbjct: 575 AIAPTQSISYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPM 613

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
            +          +  +    + +AF  D M LI+  S  Q  +DQ  S  LY++ E S +
Sbjct: 614 PF----------LSPETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTR 663

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 664 ELSRLYVYAHYKGLKSLYYTRNK-LLSVEECT 694


>gi|144899535|emb|CAM76399.1| Ribonucleoside-diphosphate reductase alpha subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 772

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 169/626 (26%), Positives = 280/626 (44%), Gaps = 91/626 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +       F + L+ F F+ +   +  +GT R   + +CF +  +PDD+
Sbjct: 36  RIAKALAQAEKDPALWEARFADALADFKFLPAGRIISGAGTDRRVTMFNCFVMGDIPDDM 95

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 96  AGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMS 155

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+D +   G    R    N +  I D FM+ V  +  W 
Sbjct: 156 AGSRRGAMMATMRCDHPDIEAFIDAKHEAG----RLRMFNLSVLITDPFMEAVKHDQAWE 211

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L           ++G                    V++ + A ALW K++   +    P 
Sbjct: 212 L-----------VFGG------------------VVYKSLPARALWDKIMHATYAYAEPG 242

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   +H++N C E  L        VC LGS+NL A   ++ F    
Sbjct: 243 VIFIDRINRLNNLHYCETIHATNPCGEQPL----PPYGVCLLGSVNL-AKLVSDPFEAKA 297

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D DKL   +R AVR++DNVID++   +++ +    + R IGLG+ G   AL L +  Y
Sbjct: 298 RLDMDKLRDLVRVAVRMMDNVIDVSRFPLDRHENEAKSKRRIGLGVTGLADALILCNARY 357

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVR 733
              +A+ + +E M+ +   A  ASVELAQE+GA+  ++   +  G    ++I  L A+V+
Sbjct: 358 GGKDALRLTEEWMDALRREAYLASVELAQEKGAFPLYEKEPYLAG----ETIQALDADVQ 413

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVK 792
             +A +                 G+RN+   +IAPT TI+     VS  ++P +   Y +
Sbjct: 414 AAIAEH-----------------GIRNALLTSIAPTGTISLFADNVSSGLEPVFSFTYTR 456

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           + +  D T           +R    E  +SD  Y    +   E  P  L      A  ++
Sbjct: 457 AVLQKDGT-----------RR----EEEVSDYAYRLFRLLKGENAP--LPPAFVDAQRLN 499

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTYYLR--SRS 907
           P   +   +  QK+ID + S  + + E  S +    +Y QA+  G K  TTY     + S
Sbjct: 500 PTEHVVMQAAVQKYIDSSISKTINVPESISFEDFRHVYEQAYASGCKGCTTYRPNDITGS 559

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNS 933
             +V+K   K  D     +P+  P +
Sbjct: 560 VLTVKKEEPKAEDQDQPQLPLGKPAA 585


>gi|114765474|ref|ZP_01444584.1| ribonucleoside-diphosphate reductase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542184|gb|EAU45215.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           HTCC2601]
          Length = 762

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 175/640 (27%), Positives = 283/640 (44%), Gaps = 89/640 (13%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I+M  +  + R+A  LA  E + E+    F+  L  F ++ +      +GT 
Sbjct: 19  FKEADGTPIDMSVEDSWRRIARSLASVEKDAERWEETFFEALEDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +HG    + 
Sbjct: 79  RSVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAIVHGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIAAKS----DSARLRMFNLS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W L                             + + KV+  + A
Sbjct: 195 VLVTDPFMEAVKADGSWDL-----------------------------KFDGKVYHTVKA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F D  N  +   +V  + ++N C E  L         C L
Sbjct: 226 RDLWNKIMKATYDYAEPGVIFIDRINEANNLNYVEQIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSINL A    + F      D   L + + TAVR++DNV+D +   + + ++     R I
Sbjct: 282 GSINL-ARLVTDPFTDAAEIDDAALETLVATAVRMMDNVVDASRFPLPEQEEEAQNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +  + Y S EA    ++ +  I+  +  ASVELA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMKGLRYGSEEAAAQTEDWLHRIARASYLASVELAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                  D+   LA       MN       +++++ ++T G+RN+   +IAPT TI+   
Sbjct: 396 -------DAEKYLASGN---MMNMD-----EDVREAIRTHGIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           G VS  I+P +   Y +  +  D T     +V+   Q       M  DLK      G+ E
Sbjct: 441 GNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVDYAVQ-------MWRDLK------GDAE 487

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
            +PD        A  +DP   +   +  QKWID + S  +   E  S +    +Y QA+ 
Sbjct: 488 -LPD----YFVNAQTLDPQDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQAYE 542

Query: 895 MGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            G K  TTY     + + +  S  K    +  A P  +PN
Sbjct: 543 TGCKGCTTYRPNDVTGSVLSVSEEKKAAPEAVATPAAEPN 582


>gi|312130785|ref|YP_003998125.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
 gi|311907331|gb|ADQ17772.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
          Length = 557

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 172/622 (27%), Positives = 270/622 (43%), Gaps = 112/622 (18%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L  NG  +E       R+    A K   K +    F  ++       S+P  
Sbjct: 22  QILNRGYLL--NGETVE---GAIHRICSAAA-KRLYKPELTEAFKEMIERGWMSLSSPIW 75

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD +  I   L E  M  K  GG    +  +RG G+ +   N
Sbjct: 76  ANMGTERGLPISCFNVHVPDSIESITHKLGEVIMQTKTGGGTSGYFGDLRGRGSAVT-DN 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D EEFL + KN G+      +
Sbjct: 135 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLQI-KNIGNP---IQN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A  +PD +M+ +               D+               +RQ          
Sbjct: 191 LFFAVCVPDYWMQEMID------------GDME--------------KRQ---------- 214

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSE 595
                 LW K+L    + G P+I F D  N   PQ    H   +++SNLC+EI L SS++
Sbjct: 215 ------LWAKVLESRQQKGLPYIFFTDNVNRNKPQVYKDHNMRINASNLCSEIMLPSSAD 268

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKS 649
           E+ +C L S+NL        +D  K    ++ A+  LD V+        + + +  A + 
Sbjct: 269 ESFICCLSSMNL------ELYDEWKDTKAVKLAIFFLDAVLQEFIAKTEDNYYLAAANRF 322

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    +P+   EA ++  E    +   A  A+ ELA   G   
Sbjct: 323 AKRHRALGLGVLGWHSLLQKRMLPFEGMEAKQLTSEIFRHMKTEADKATEELAMIYGEPE 382

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 383 LLKG------------------------------------------YGRRNTTTMAIAPT 400

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N +      G+F   N +L   L+++ + +E     +  ++
Sbjct: 401 TSSSAILGQTSPGIEPFSSNYFKAGLAKGNFMRKNKYLKALLEEKGIDNEETWRSIMLNN 460

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ +++ + +  K +  T  EI  + +I+ AS RQK++DQ QSLN+ +  E   K ++ 
Sbjct: 461 GSVQHLKELNEYEKSVFKTFKEISQLEIIQQASIRQKYVDQGQSLNINIPAELPIKDVNR 520

Query: 888 IYRQAWLMGLKTTYYLRSRSAT 909
           +  +AW +G+K+ YY RS+S +
Sbjct: 521 LIIEAWKLGIKSLYYQRSQSVS 542


>gi|268315916|ref|YP_003289635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
 gi|262333450|gb|ACY47247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
          Length = 620

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 164/583 (28%), Positives = 268/583 (45%), Gaps = 62/583 (10%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQE 389
           E+E+ + A  FY +L  F F+     L  +GTRH   L +CF +  + D L GIF +L+E
Sbjct: 56  ESERARWAERFYQVLYGFKFLPGGRILAGAGTRHRVTLFNCFVMGIIEDSLDGIFDSLKE 115

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A+  +  GG+G D++ +R  G     T   + G + F+ + +     +   G R+GA+ 
Sbjct: 116 GALTMQQGGGVGYDFSTLRPAGTRARTTGTIASGPVSFMHIWDAMCATLLSTGARRGAMM 175

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           A L   H D+E F+  +   G     TH  N +  + D FM+ V ++A W L  P   + 
Sbjct: 176 ATLRCDHPDIETFVTAKHRPG---VLTH-FNLSVQVFDEFMEAVRRDADWPLVFP--AAA 229

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L D    +  I Y  +         +V R + A ALW ++L   ++   P + F D  N 
Sbjct: 230 LEDEGMGDGPIVYRRWTGTDGPVPCRVLRVVKARALWEQILRATYDYAEPGVLFIDTINR 289

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLAS 623
            +   +   + ++N C E  L         C+LGSINL   F    F      D++ +  
Sbjct: 290 MNNLAYREHITATNPCGEQPLPPY----GACDLGSINL-TRFVRAPFTPEADLDWEGIRE 344

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  AVR+LDNVID++   +    +     R IGLG+ G   AL +L + YAS EA ++A
Sbjct: 345 TVAVAVRMLDNVIDVSGFPLPAQAEQARGTRRIGLGITGLADALIMLGLHYASEEARQLA 404

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              M+ I   A   S+ LA+E+G +  F+   + +  F                      
Sbjct: 405 ARVMQTICHTAYRTSIALAREKGVFPFFERERYLESPF-------------------IQA 445

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           LP ++++K + T G+RNS+ ++IAPT TI+ +   VS  I+P +   Y +  +  D    
Sbjct: 446 LP-EDIRKGIATYGIRNSHLLSIAPTGTISLLANNVSSGIEPVFAYRYTRYILGLD---- 500

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +   L D A+    + H    G+ E +P+        A  +DP   ++  + 
Sbjct: 501 -----GERRAYTLTDYALRLWQRLH----GDSEMLPEAF----VDAQHLDPYDHLKMQAA 547

Query: 863 RQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
            Q ++D A  +++N+  D P       +Y  A+  GLK  TTY
Sbjct: 548 LQPYVDGAISKTVNVPADTPF-NAFRQLYDWAYDHGLKGCTTY 589


>gi|194468107|ref|ZP_03074093.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
 gi|194452960|gb|EDX41858.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
          Length = 723

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 176/694 (25%), Positives = 308/694 (44%), Gaps = 88/694 (12%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317
           YIEEG   +   E+ ++    YL       ++F F  ++     Y +Y L  N     + 
Sbjct: 67  YIEEGFMNKY-SEAFIEKLYEYLK-----AQNFHFHSFMAAYKFYAQYALRTNDKEYYL- 119

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376
           + +  RVAM         E+ A++  + +    +  +TPT  N G  R  +  SCF    
Sbjct: 120 ENYIDRVAMNALYLANGDEELAMQLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFALQT 179

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DD+  I   +     L+K  GG+G + + +R  GA I    G + GV+P +K+  D+  
Sbjct: 180 TDDMNTIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIQGAASGVVPVMKLLEDSFS 239

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R+GA   YL  +H D+ EFL  +K   D++ R   ++    +PD F + V QN
Sbjct: 240 YSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEQN 299

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           A   LFSP    D+  +YG  F      + Y+      +I+  +K++A  L  ++  +  
Sbjct: 300 ADMYLFSP---YDVERVYGMPFSYVDITKEYDNLVANDDIRK-KKVNARDLEDEISKLQQ 355

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNL 602
           E+G+P+I   D  N  +P    G +  SNLC+EI           + S  E  +   CNL
Sbjct: 356 ESGYPYIINIDTENRDNPIN--GKIVMSNLCSEIAQVQVPARVNDDQSYSEMGIDISCNL 413

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
           GS N+      N  +      +I+  +R L  + D+ +   +   +  N    ++GLG M
Sbjct: 414 GSTNIA-----NMMESPDFGKSIKAMMRGLTRISDVEDLDVVPTIQNGNRLAHSVGLGAM 468

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  S L   HI Y SP A+E        +++ ++ AS E+A+ER   +  F+ S +  G 
Sbjct: 469 GLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHDFENSKYADGS 528

Query: 721 FPIDSI----GLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    +    G  ++V   L   +       W  LK++V   G+ N   +A+AP  + + 
Sbjct: 529 YFEKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKNLKEKVMKDGLYNQYRLAVAPNGSTSY 588

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   + S+ P                     ++N +++R    E MI  + Y    + N 
Sbjct: 589 INDSTASLHP---------------------IINRVEER---QEKMIGKIYYPAPYLSN- 623

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------D 878
                D    + +A+++D   +I++ +  Q+ IDQ+ S+ L++                D
Sbjct: 624 -----DTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLSMTLFMRSTIPAGLYEWKNGRTD 678

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + + + L+ +   A+  G+K+ YY+R+ +  S E
Sbjct: 679 KMTTRDLNILRHYAYKRGIKSIYYIRTFTDDSGE 712


>gi|293389920|ref|ZP_06634254.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950454|gb|EFE00573.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 561

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/587 (28%), Positives = 255/587 (43%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 57  EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 117 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+LD+                 N I  L    V  +  W                
Sbjct: 176 HGDIEEWLDIH-------------TEGNPI-QLMYYGVCVSHEWL--------------- 206

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            E   A + Y+RQ                +W K+L    ETG P++ FKD  N   P  +
Sbjct: 207 -EAMKAGDPYKRQ----------------IWAKLLQRKTETGIPYLFFKDNANAGRPDVY 249

Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                ++H+SNLC+EI L SS +E+ VC L S+NLL       FD  K           L
Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        N   +EKA K    HRA+GLG++G+ S L   +I + S EA++  +  
Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELA   G     KG                                 
Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M++APT + + I G VS SI+P   N YVK          N F
Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   LKQ+ L  E +   +  +DGS+ ++  + +  K++  T  EI  + +I+ A++RQK
Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548


>gi|325989610|ref|YP_004249309.1| putative ribonucleoside-diphosphate reductase [Mycoplasma suis
           KI3806]
 gi|323574695|emb|CBZ40351.1| probable ribonucleoside-diphosphate reductase [Mycoplasma suis]
          Length = 528

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 275/541 (50%), Gaps = 69/541 (12%)

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+  + + +RG GA I   +  + GV+P LK+  +     +Q G R+G+  AYL
Sbjct: 20  LSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILENVFDYADQLGMRRGSGVAYL 79

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H D+ +F+D +K   D++ R   ++    IPD F++  T+N  + +F P+ +   + 
Sbjct: 80  NIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLATENKNFFIFEPNTIYQKYK 139

Query: 513 LYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +   +  +  E Y++  AD+  +K  +++SA  +  ++  + FE+G+P++ + D  N + 
Sbjct: 140 VLLSDLNMN-EWYDKLAADKDILK--KELSARNVLTRIAQIQFESGYPYVIYIDNANKQH 196

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
           P + +G +  SNLCTEI       T+    +E  +     CNL S+NL+     N  +  
Sbjct: 197 PLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCNLASLNLV-----NLLEEK 251

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKA---KKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            L   I  ++R L  V D+   +I+ A   +K+N + R++GLG++ F   L   ++ Y  
Sbjct: 252 DLEKVIDISMRALTAVSDLT--SIKNAPSIRKANESFRSVGLGVLNFTGVLLKNNLAYDD 309

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQGVFPIDSIGLL 729
           PE +E AD     I+++++ AS  +A+E+   + +F+      GS +DQ  +  +S    
Sbjct: 310 PEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSYFDQ--YLNNSFEPK 367

Query: 730 AEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +E   EL  N     P  W +LK++V+  G+ N+  +AIAPT +I+ +   + SI P   
Sbjct: 368 SEKVKELLKNIKVPSPEDWAKLKEKVQQDGLYNAYRLAIAPTQSISYLQSATASIQP--- 424

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +++ ++ R L+  +M         +   +  +  + + ++ +
Sbjct: 425 ------------------IISPIETR-LYGNSM---------TYFPMPFLTKENEHLYKS 456

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A++ID   LI+ ++  QK IDQ  S  LY+ +  + + L  +Y  A   GLK+ YY+R++
Sbjct: 457 AYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHHKGLKSLYYVRTK 516

Query: 907 S 907
           +
Sbjct: 517 N 517


>gi|261868067|ref|YP_003255989.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413399|gb|ACX82770.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 561

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/587 (28%), Positives = 255/587 (43%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 57  EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 117 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+LD+                 N I  L    V  +  W                
Sbjct: 176 HGDIEEWLDIH-------------TEGNPI-QLMYYGVCVSHEWL--------------- 206

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            E   A + Y+RQ                +W K+L    ETG P++ FKD  N   P  +
Sbjct: 207 -EAMKAGDPYKRQ----------------IWAKLLQRKTETGIPYLFFKDNANADRPDVY 249

Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                ++H+SNLC+EI L SS +E+ VC L S+NLL       FD  K           L
Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        N   +EKA K    HRA+GLG++G+ S L   +I + S EA++  +  
Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELA   G     KG                                 
Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M++APT + + I G VS SI+P   N YVK          N F
Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   LKQ+ L  E +   +  +DGS+ ++  + +  K++  T  EI  + +I+ A++RQK
Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548


>gi|251797996|ref|YP_003012727.1| ribonucleoside-diphosphate reductase, subunit alpha [Paenibacillus
           sp. JDR-2]
 gi|247545622|gb|ACT02641.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. JDR-2]
          Length = 684

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 177/658 (26%), Positives = 295/658 (44%), Gaps = 82/658 (12%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSS 348
           F FE Y+ +   Y  Y +  N     + Q +  RVA+  L L E +  K A+     +  
Sbjct: 72  FQFESYMAISKFYKDYAMKTNDKSKYLEQ-YPDRVAIVALNLGEGDGAK-ALRIAEAMIE 129

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                +TPT  N+G +R  ++ SCFL  + D L  I   L     L+K  GG+  + + +
Sbjct: 130 QRLQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKL 189

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG G  I G  G ++GV+P LK+  D     +Q G+RKG+   Y   +  D+ EFLD +K
Sbjct: 190 RGRGEAIKGVEGAAKGVMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDIIEFLDCKK 249

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD--LYGKEFEIAYENY 525
              D++ R   ++    IP+ F +   +N    +F P  V   +D  L   + ++ YE  
Sbjct: 250 INADEKTRIKTLSIGLIIPNKFYELAAKNETLYVFGPHSVHKAYDKHLDDMDMDVMYE-- 307

Query: 526 ERQADRGEIKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           E  A+    KV +K  ++A  +  K+ ++  E+G+P+I  K   N     + +G V  SN
Sbjct: 308 ELLAND---KVVKKAVMNARDMMTKIASIQLESGYPYIMNKSNANRVHALKDIGQVKMSN 364

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LCTEI       T+N    +  +     CNL S+N++     N  +  KL  ++   +  
Sbjct: 365 LCTEIFQVQETSTINDYGMDDVIRRDISCNLASLNIV-----NVMERKKLKESVHVGIEA 419

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D++        +K+N    ++GLG M          I Y S EA E A      +
Sbjct: 420 LTTVSDVSEIDNAPGVRKANEELHSVGLGAMNLNGFFAKNKIAYESDEAKEFASAFFMMM 479

Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAM 738
           ++++I  S+E+A+ERGA +  F  S + +G +             DS+  L E      M
Sbjct: 480 NYYSIEKSMEIAKERGASFKDFDRSEYAKGTYFTRYIETDFRPASDSVKELFE-----GM 534

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              S   W +LK++V+  G+ ++  +AIAPT +I+ I   + S+ P              
Sbjct: 535 EIPSPQDWADLKEKVQKNGLYHAYRLAIAPTQSISYIQNSTSSVMP-------------- 580

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V  ++ R   +      + Y          +  D    + +A+ ID   LI+
Sbjct: 581 -------IVEHIETRTYANSTTYYPMPY----------LAQDNYFYYKSAYNIDQFKLID 623

Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
                Q+ +DQ  S  L+++   + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 624 LIWEIQQHVDQGISTVLHVNSNVTTRELARFYIYAAQKGLKSLYYTRTKR-LSVEECT 680


>gi|216905874|ref|YP_002333502.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 9]
 gi|216410028|dbj|BAH02446.1| large subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 790

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 181/668 (27%), Positives = 300/668 (44%), Gaps = 78/668 (11%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ  + Y+  +L  + G RIE    FF+R+A        E+   A             
Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEQPAMARVVVSGEVGWTYI 191

Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              ++  L+    + +TP +   G     ++SC+L    V D    +   ++E   +   
Sbjct: 192 FKAYFTALAGQVIIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAMLALMEEAGPILCN 251

Query: 397 SGGLGNDW----TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
            GG+G       TP +          G S+GV+  LK+ +   +A+N  G+R   VC Y 
Sbjct: 252 RGGIGMSLQRFNTPPK---------EGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYF 302

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPD 505
           E WH D+   L++R     D+  R  ++    W PDLF  R  +         WTLF  D
Sbjct: 303 EPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYKRYLDGESGVMWTLFD-D 361

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             S L  +YGKEFE  YE  E      +    + ++ + +   ++     TG P++ FKD
Sbjct: 362 TASHLCHMYGKEFEEEYERLELCGFGVDSIPIQDMAFIIVRSAVM-----TGSPFLMFKD 416

Query: 566 PCN--IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL---LA----HFAN-NQ 615
            CN       +    +  SNLCTEI  ++   +  VCNL SINL   LA    H A    
Sbjct: 417 ACNKHYHFDLRRKSAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPY 476

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+  L     TA   +++++  + +   K+++    +R++GLG+ G  +A  +L +  A
Sbjct: 477 FDFAALGRAAATATIFVNSMMRASTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMA 536

Query: 676 SPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           SPEA ++  +  E +  +++ AS  L +     +  F+ S + +G  P D+         
Sbjct: 537 SPEARQLNKQIAERLLLNSMKASATLCRLGMQPFKGFEDSKYSRGELPFDAYP------- 589

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +   +R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K  
Sbjct: 590 --GVTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVT 647

Query: 795 MSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGS-IGNIERIP--DDLKKIHATA 848
            +G+    N  L+  ++    R+      +S L+    S +G    +P    L K   TA
Sbjct: 648 ATGEVLRPNVLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFK-TA 706

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYY 902
           FE D   LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY
Sbjct: 707 FEYDQKTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYY 766

Query: 903 LRSRSATS 910
            + + AT+
Sbjct: 767 CKIKKATN 774


>gi|46981430|gb|AAT07701.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|94482187|gb|ABF21884.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482261|gb|ABF21957.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
          Length = 775

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 173/672 (25%), Positives = 297/672 (44%), Gaps = 83/672 (12%)

Query: 292 AFEYLGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------- 340
           A   LGLQ  + Y+ ++L  +   ++E    FF+R+A  +  +     K A         
Sbjct: 118 ALATLGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDG 177

Query: 341 --------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGAL 387
                    F+  L+    + +TP +   G      +SC+L      TV   +  I G  
Sbjct: 178 YTWTDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITG-- 235

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +   + +  GG+G     +     ++  T  +++G++  LK+ +   +A+N   +R   
Sbjct: 236 -DVGTVLQSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTG 289

Query: 448 VCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWT 500
           VC Y+E WH+D++  L  R     D+  R  ++    W PDLF +R         N  WT
Sbjct: 290 VCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWT 349

Query: 501 LFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE---T 556
           LF  D  +D L  L+G+ F   Y   ER+           +S+V +     T++     T
Sbjct: 350 LF--DNRADILRTLHGEAFTSTYLRLEREG--------LGVSSVPIQDIAFTIIRSAAVT 399

Query: 557 GHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G P++ FKD CN        G  +  SNLCTEI   + + +  VCNL SINL    +   
Sbjct: 400 GSPFLMFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGP 459

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             F+ + L  T RT V  L+ V+       +K+ K    +R++G+G+ G  +    L   
Sbjct: 460 VSFNLNDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFD 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFPIDSIGLLA 730
             S  A  +  +  E + +  +  S+E+ +  G  + FKG   S + +G    D    ++
Sbjct: 520 LTSQPARRLNVQIAELMLYETMKTSMEMCK-IGGLAPFKGFTESKYAKGWLHQDGFSTIS 578

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +           LPW  L+  +   G+ NS  +A+ PT + A +   S+   P Y N++
Sbjct: 579 YLD----------LPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMF 628

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA---- 846
            K   SG+    N  L++EL+     +E  +  +   + +  ++ R    L   H     
Sbjct: 629 SKVTTSGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKY 688

Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899
            TAFE +   L++  + R  +IDQ+QS+ L+++E      P+ K ++ + R A+  GLKT
Sbjct: 689 KTAFEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIR-AYKAGLKT 747

Query: 900 -TYYLRSRSATS 910
             YY + R AT+
Sbjct: 748 GMYYCKIRKATN 759


>gi|312864803|ref|ZP_07725034.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099930|gb|EFQ58143.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 719

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 173/667 (25%), Positives = 298/667 (44%), Gaps = 89/667 (13%)

Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           LA DL+ E DF F+ ++     Y +Y L  N     + ++   RV           E  A
Sbjct: 82  LAKDLQ-EADFHFQSFMAAYKFYQQYALKTNDGTAYL-ESIEDRVLFNALYFADGNEVLA 139

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +    + +  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  G
Sbjct: 140 QDLAREMIAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGG 199

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D
Sbjct: 200 GVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPD 259

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V        KE+
Sbjct: 260 ILSFLSTKKENADEKIRVKTLSLGVTVPDKFYELARKNEDMYLFSPYTVE-------KEY 312

Query: 519 EIAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            + Y      E Y+       I    KISA  L  ++  +  E+G+P++   D  N  +P
Sbjct: 313 GVPYNYIDITEKYDELVANPNITK-TKISARELETEISKLQQESGYPYVVNVDTANRSNP 371

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+EI        +N + E   +     CNLGS N++   A+  F    
Sbjct: 372 ID--GKIVMSNLCSEILQVQKPSLINDAQEFVQMGTDISCNLGSTNIVNMMASPDF---- 425

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              +I+   R L  V D  N   +   K  N      GLG MG  S L   H+ Y SPE+
Sbjct: 426 -GRSIKAMTRALTFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSFLARHHMEYGSPES 484

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLL----AEVR 733
           +E  D     +++  +  S  +A+ERG ++  F+ S +  G +    + G      A+V+
Sbjct: 485 IEFTDIYFMLMNYWTLVESNAIARERGQSFVGFEKSKYADGTYFDKYVTGQFQPKSAKVK 544

Query: 734 DELAMNRTSRL-PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           +  A +   +   W+ L++ V   G+ + N +A+AP  +I+ I  VS SI P        
Sbjct: 545 ELFAKHFIPQAGDWEALRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHP-------- 596

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        ++  +++R    E  I  + Y+  S  + + IP      + +A+++D
Sbjct: 597 -------------IIQRIEER---QEKKIGKI-YYPASGLSTDTIP-----YYTSAYDMD 634

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLK 898
              +I+  +   + +DQ  S+ L++               + + + L  +   A+  G+K
Sbjct: 635 MRKVIDVYAAATEHVDQGLSMTLFMRSELPQELYEWKTESKQTTRDLSILRNYAFNKGIK 694

Query: 899 TTYYLRS 905
           + YY+R+
Sbjct: 695 SIYYIRT 701


>gi|94985874|ref|YP_605238.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
 gi|94556155|gb|ABF46069.1| Ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
          Length = 649

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 181/667 (27%), Positives = 294/667 (44%), Gaps = 92/667 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y   F F+ ++G Q  Y  Y     +GSR +E  +     VA+  A    E    A+   
Sbjct: 28  YSHRFRFQSFMGAQKFYAEYATKTPDGSRYLERYEDRMSMVALARAGGNAEL---ALTLV 84

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLG 401
           + L    F+ +TPTL NSG  +  +L+SCFL     D L  I       A L+K  GG+G
Sbjct: 85  DHLVRQTFVPATPTLMNSGKANTGRLTSCFLLQDCTDSLDSIMKTQHFAADLSKNGGGVG 144

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  G  +    G ++G     K+ +      +Q G+R+GA    L   H D +E
Sbjct: 145 IDLSNLRARGESLRHLQGVTKGAAAVAKLFDVLFRYADQAGQRQGAAVVNLNVMHPDFQE 204

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
            L  +K   D+  R   ++    IPD+FM+ V  +            D++ +Y + +E A
Sbjct: 205 LLAGKKIATDEDARLKTLSICAVIPDVFMQAVRDD-----------KDVYQVYPRSYEQA 253

Query: 522 Y----------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                        Y    +   I+  R++SA  L +++     E+G+P++ F    N  +
Sbjct: 254 TGRIFTDIDWDTEYASIVENPNIRK-RRVSARQLLQEIALTQGESGYPYLLFTGNANRAN 312

Query: 572 PQQHVGVVHSSNLCTEI---TLNSS----SEET-------AVCNLGSINLLAHFANNQFD 617
           P  +VG V  +NLC+EI   TL SS     EE          CNL S+++      N   
Sbjct: 313 PVPNVGTVKMTNLCSEIMQPTLPSSFHPYGEEARDEIGLDVSCNLASLHI-----GNALK 367

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
              L   +R A+ +LD+V    N   +    ++N   R+IGLG MG    L    I Y S
Sbjct: 368 SGDLGGVVRAAISMLDDVAQSTNITEVPAVARANREMRSIGLGAMGLHGHLAEHGIAYGS 427

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--PID------SIG 727
           PEA+   D   E + FHA  AS+ELA++ G  ++ F+GS +  G +  P        +  
Sbjct: 428 PEALAFCDLFFEAVHFHARRASMELARDTGFVFAGFQGSRYQSGEYFAPYTEREREPAQD 487

Query: 728 LLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           L  EVR  L      +R  W +L   ++  G+ +S+ MAIAPT +I+ +   + S+ P  
Sbjct: 488 LAPEVRAALQGAWLPTREDWRQLVSDIQRYGLAHSHVMAIAPTGSISYVANATASVMPIT 547

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           + +  +++  G       + +  L ++  W                            + 
Sbjct: 548 ERVETRTSGKGK----TIYPMPGLNEQTEW---------------------------FYE 576

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+++D   +I++ +  Q+ +DQ  S  L++    +   L  +Y  A+  GLK+ YYLR 
Sbjct: 577 EAYDMDMRRVIDTVATIQRHVDQGISCTLFVRSNVTTADLARLYISAYRKGLKSLYYLRQ 636

Query: 906 RSATSVE 912
           R AT  E
Sbjct: 637 RRATVQE 643


>gi|9625894|ref|NP_040142.1| ribonucleotide reductase subunit 1 [Human herpesvirus 3]
 gi|132612|sp|P09248|RIR1_VZVD RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|259645275|sp|Q4JQV6|RIR1_VZVO RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|60008|emb|CAA27902.1| ribonucleotide reductase (large subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981501|gb|AAT07777.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|66866037|gb|AAY57685.1| ORF19 [Human herpesvirus 3]
 gi|66866109|gb|AAY57756.1| ORF19 [Human herpesvirus 3]
 gi|83721827|emb|CAI44862.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|90992818|gb|ABE03037.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|91980320|gb|ABE67127.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481817|gb|ABF21519.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481891|gb|ABF21592.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481965|gb|ABF21665.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482039|gb|ABF21738.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482113|gb|ABF21811.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482335|gb|ABF22030.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482409|gb|ABF22103.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482483|gb|ABF22176.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482557|gb|ABF22249.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184727|gb|ABH08435.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|157965776|gb|ABW06922.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
          Length = 775

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 173/672 (25%), Positives = 297/672 (44%), Gaps = 83/672 (12%)

Query: 292 AFEYLGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAV-------- 340
           A   LGLQ  + Y+ ++L  +   ++E    FF+R+A  +  +     K A         
Sbjct: 118 ALATLGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDG 177

Query: 341 --------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-----TTVPDDLYGIFGAL 387
                    F+  L+    + +TP +   G      +SC+L      TV   +  I G  
Sbjct: 178 YTWTDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITG-- 235

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            +   + +  GG+G     +     ++  T  +++G++  LK+ +   +A+N   +R   
Sbjct: 236 -DVGTVLQSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTG 289

Query: 448 VCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWT 500
           VC Y+E WH+D++  L  R     D+  R  ++    W PDLF +R         N  WT
Sbjct: 290 VCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWT 349

Query: 501 LFSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE---T 556
           LF  D  +D L  L+G+ F   Y   ER+           +S+V +     T++     T
Sbjct: 350 LF--DNRADILRTLHGEAFTSTYLRLEREG--------LGVSSVPIQDIAFTIIRSAAVT 399

Query: 557 GHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G P++ FKD CN        G  +  SNLCTEI   + + +  VCNL SINL    +   
Sbjct: 400 GSPFLMFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGP 459

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             F+ + L  T RT V  L+ V+       +K+ K    +R++G+G+ G  +    L   
Sbjct: 460 VSFNLNDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFD 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWDQGVFPIDSIGLLA 730
             S  A  +  +  E + +  +  S+E+ +  G  + FKG   S + +G    D    ++
Sbjct: 520 LTSQPARRLNVQIAELMLYETMKTSMEMCK-IGGLAPFKGFTESKYAKGWLHQDGFSTIS 578

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +           LPW  L+  +   G+ NS  +A+ PT + A +   S+   P Y N++
Sbjct: 579 YLD----------LPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMF 628

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA---- 846
            K   SG+    N  L++EL+     +E  +  +   + +  ++ R    L   H     
Sbjct: 629 SKVTTSGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKY 688

Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899
            TAFE +   L++  + R  +IDQ+QS+ L+++E      P+ K ++ + R A+  GLKT
Sbjct: 689 KTAFEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIR-AYKAGLKT 747

Query: 900 -TYYLRSRSATS 910
             YY + R AT+
Sbjct: 748 GMYYCKIRKATN 759


>gi|56964872|ref|YP_176603.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           clausii KSM-K16]
 gi|56911115|dbj|BAD65642.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus clausii
           KSM-K16]
          Length = 698

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 171/661 (25%), Positives = 289/661 (43%), Gaps = 92/661 (13%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           D+ Y + F F  ++     Y+ Y L  N  + ++ + +  RVA+          ++A   
Sbjct: 80  DIAYNKKFRFPSFMSAFKFYNDYALKTN-DKSKILERYEDRVAIVSLFFGNGDVEKAKAL 138

Query: 343 YNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            N + S  F  +TPT  N+G  R  +L SCFL  + D L  I  A+  +  L+K  GG+ 
Sbjct: 139 VNAMISQEFQPATPTFLNAGRKRRGELVSCFLLEINDSLNDISRAVDISMQLSKLGGGVA 198

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +
Sbjct: 199 LNLSKLRAKGEAIKDVANATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHADIND 258

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-- 519
           FLD RK + D+  R   ++    IPD F++ + ++    LF P  V   +  YG+ F+  
Sbjct: 259 FLDTRKISADEDVRVKTLSIGVVIPDKFIELMREDKDAYLFYPHTV---YKAYGQHFDEM 315

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E YE   D   ++   KI+   L++K+  +  E+G+P+I F D  N      H+  V
Sbjct: 316 DMEEMYETLVDDPRVRK-EKINPRRLFQKLAILRSESGYPYIMFADNVNKAHANGHISNV 374

Query: 580 HSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLC+EI       T     EE  +     CNLGSIN++     N  +   L +T+  
Sbjct: 375 KFSNLCSEILQASEVSTYTDYGEEDEIGLDISCNLGSINIM-----NVMENKSLENTVSL 429

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A   L  V +  N       ++ N   ++IGLG M     L   HI Y S EA + A+  
Sbjct: 430 ATDALTRVSESTNITNAPAVRRGNKLMKSIGLGAMNLHGYLAKQHIAYESEEARDFANTF 489

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRD 734
              +++ +I  S E+A+++G  Y  ++GS +  G +             D +  L +   
Sbjct: 490 FMAMNYFSIKRSAEIARDQGETYHGYEGSTYADGSYFKKYIENDFTPKFDKVKALFD--- 546

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP--------SY 786
              M   ++  W  L+  V   G+ +S  +AIAPT +I+ +   + S+ P        +Y
Sbjct: 547 --GMFVPTKEDWQALQAFVAEHGLYHSYRLAIAPTGSISYVQSATASVMPIMERIEERTY 604

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N      M G     N F   E                                     
Sbjct: 605 GNSKTYYPMPG-LNANNWFFYKE------------------------------------- 626

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+++D   +++  +  Q+ +DQ  S  L+L D  + + L+ I   A   G+KT YY R+
Sbjct: 627 -AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYART 685

Query: 906 R 906
           +
Sbjct: 686 K 686


>gi|319401191|gb|EFV89406.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 273/609 (44%), Gaps = 77/609 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571
            + ++  + Y+       I+  +K +     R+ML M+ +T    G+P++ FKD  N   
Sbjct: 316 DDIDLE-KYYDDMVANPNIEKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
              ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  
Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIV-----NVMESG 424

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S E
Sbjct: 425 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A + A+     +++++I  S+E+A+ERG  Y  F+ S +  G +             E  
Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540

Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +  +L           W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P   
Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V+++++R   +      + +          +  +    + +
Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AF  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689

Query: 907 SATSVEKST 915
              SVE+ T
Sbjct: 690 -LLSVEECT 697


>gi|227504051|ref|ZP_03934100.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199381|gb|EEI79429.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 745

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 155/597 (25%), Positives = 268/597 (44%), Gaps = 69/597 (11%)

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N+G  +  ++ SCFL  + D+L  I  ++     L+K  GG+    + 
Sbjct: 185 SGRFQPATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSN 244

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 245 LRESGAPIKKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 304

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E+Y+
Sbjct: 305 RENADEKVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVPMSDMSIT-EHYD 363

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I     I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+
Sbjct: 364 ELVTNPRIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRSNPLK--GHINMSNLCS 420

Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI       TL+ S     +     CNLGS+N+   F +  F      +T+ TAVR L  
Sbjct: 421 EILQVNAPSTLDPSGNYATIGQDISCNLGSLNIAKAFESPDF-----GATVETAVRALTQ 475

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V ++ +   +    K N +  AIGLG M     L    I Y   EA++  +     +++H
Sbjct: 476 VSELTDIEAVPSIAKGNESMHAIGLGQMNLHGFLASKRIHYGCAEALDFTNFYFLTVTYH 535

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGVFP--------IDSIGLLAEVRDELAMNRTSRL 744
           A+  S  LA E+G  +  F+ S +  G F         + +   + ++  E  +   +R 
Sbjct: 536 ALRTSHALAVEKGQRFQGFEDSAYASGAFFDKYLKQEWVPATKRVEQLFHEAGVRIPTRE 595

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK +V   G+ N+   A+ PT +I+ I   + SI P    + ++            
Sbjct: 596 DWLKLKNQVARDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKE---------- 645

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                L +       M +D         N+E   D        +F +    +I++ +   
Sbjct: 646 ---GRLGRVYYPAPGMTND---------NVEYFED--------SFTVGYEKIIDTYAMAT 685

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           + +DQ  SL L+   + + + ++     AW  G+KT YY+R R      +S L+G +
Sbjct: 686 QHVDQGLSLTLFFTADSTTRDINRAQIYAWKAGIKTLYYIRLR------QSALQGTE 736


>gi|52080344|ref|YP_079135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|52785723|ref|YP_091552.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|319645871|ref|ZP_08000101.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
 gi|52003555|gb|AAU23497.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348225|gb|AAU40859.1| NrdE [Bacillus licheniformis ATCC 14580]
 gi|317391621|gb|EFV72418.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
          Length = 700

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 179/688 (26%), Positives = 300/688 (43%), Gaps = 101/688 (14%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E+  RY  E +K          F      +  K+  D+A +    + + +RY       R
Sbjct: 67  EFLSRYTFEEIKEVFKEAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERY-----EDR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCF 372
           I +   FF   A G      +KEK A EF  ++ +  +  STPT  N+G  R  +L SCF
Sbjct: 122 ISIVALFF---ANG------DKEK-AKEFVRMMINQEYQPSTPTFLNAGRKRRGELVSCF 171

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ +
Sbjct: 172 LLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLD 231

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++ 
Sbjct: 232 NAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIEL 291

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             ++    +F P  V   +  +  E ++  E Y+R  +   +K   KI    +  K+  +
Sbjct: 292 AREDKAAYVFYPHTVYKAYGEHLDEMDMN-EMYDRLVEDPRVKK-EKIHPRKMLEKLAML 349

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAV-----C 600
             E+G+P+I F+D  N      H+  V  SNLC+E+   S         +E  +     C
Sbjct: 350 RSESGYPYIMFQDNVNNVHANNHISKVKFSNLCSEVLQASQVSSYTDYGQEDEIGLDISC 409

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+L    N       L  T++ A   L +V +  N       KK+N   ++IGLG
Sbjct: 410 NLGSLNILNVMKNKS-----LEQTVKLATDSLTHVSETTNITNAPAVKKANKAMKSIGLG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
            M     L   +I Y S EA + A+     ++F++I  S E+A+E+G  Y  ++GS +  
Sbjct: 465 AMNLHGFLAQNNIAYESEEARDFANTFFMMMNFYSIERSAEIAKEKGETYHGYEGSAYAT 524

Query: 719 GVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           G +             + +  L E      M+  ++  W +LK+ VK  G+ +S  + IA
Sbjct: 525 GEYFEKYVTQDFSPKFEKVAKLFE-----GMHIPTKEDWKQLKQFVKEHGLYHSYRLCIA 579

Query: 768 PTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           PT +I+ +   + S+ P        +Y N      M G     N F   E          
Sbjct: 580 PTGSISYVQSSTASVMPIMERIEERTYGNSKTYYPMPG-LAPSNWFYYKE---------- 628

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                       A+++D   +++  S  Q+ +DQ  S  L+L D
Sbjct: 629 ----------------------------AYDMDMFRVVDMISTIQQHVDQGISFTLFLKD 660

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             + + L+ I   A   G+KT YY R++
Sbjct: 661 TMTTRDLNRIDLYAHHKGIKTLYYARTK 688


>gi|57234945|ref|YP_180992.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57225393|gb|AAW40450.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 585

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 167/623 (26%), Positives = 268/623 (43%), Gaps = 87/623 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G+  E  +  F RVA  +A  E       +    A EFY +++ F F+
Sbjct: 10  VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFL 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G     LSSCF+  V D + GI  A+ E  ++ +Y GG G  +  +R    
Sbjct: 70  PNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   +  + G +  + V ++    + Q G R G   A L   H D+ +F+  +    D+
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
              + +      + D F+++V +   + L +P                      R     
Sbjct: 186 GSHSANFGINIALTDDFIRKVRRGEDYELVNP----------------------RTG--- 220

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++ C    L  
Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278

Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               T    LG+INL           + DY +L   I  AVR LD+V+++N +   + +K
Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEK 334

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IGLG MGF   L  L I Y S EAV  ADE M F+   A  A+ ELA ERGA+
Sbjct: 335 AARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAACQATEELALERGAF 394

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            +F GS++ Q G  P                                    RN+ C+   
Sbjct: 395 PAFAGSIYAQKGAKP-----------------------------------RRNATCLTFT 419

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
            T T + I   S  I P Y  + V++ + G   + +N       ++R  +  A+I  L  
Sbjct: 420 NTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKLLT 479

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKK 884
            + S  N   IP+D +++  TA +I P W I   +  QK+ D A  Q++N   D  S + 
Sbjct: 480 GE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPADA-SVED 537

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           +  ++ +A  +GLK     R  S
Sbjct: 538 IADLFLKAHELGLKGVTAYRDSS 560


>gi|301300445|ref|ZP_07206645.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851942|gb|EFK79626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 723

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%)

Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           S   F+ +    D   + DF F+ ++     Y +Y L  + +   + + F  RVA     
Sbjct: 74  SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389
                EK A+E  + L    +  +TP+  N+G  R  +L SCFL  + DD+  I   +  
Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L++  GG+G + + +RG GA I G +G + GV+P +K+  D+    NQ G+R+GA  
Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL  +H D+E FL  +K   D++ R   ++    +PD + + V +N    LF P  V  
Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310

Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566
              +Y K F  +Y +  ++ D       + +K I A  L  ++  +  E+G+P++   D 
Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614
            N  +P    G +  SNLC+EI        +N+  E   +     CNLGS N++   A+ 
Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425

Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            F       ++    R L  V D  +   +   +  N     IGLG MG  + L    I 
Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726
           Y SPEA+E        +++  + AS ++A+ER   + +F+ S +  G +  D+       
Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539

Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+ D + +   ++  W  LK+ V   G+ + N +A+AP  +I+ I   + S+ 
Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     ++N +++R    E  I  + Y    + N E +P     
Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887
            + +A++ D   +I++ +  Q+ +DQ  SL L++                D+ + + L  
Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687

Query: 888 IYRQAWLMGLKTTYYLRS 905
           +   A   G+K+ YY+R+
Sbjct: 688 LRNYAHYKGVKSIYYVRT 705


>gi|46255233|ref|YP_006145.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB27]
 gi|46198082|gb|AAS82492.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
           thermophilus HB27]
          Length = 559

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 173/586 (29%), Positives = 256/586 (43%), Gaps = 103/586 (17%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           T+ E    +F   ++   +  +TP   N G R     SC+ T V DD   I  A+ E  M
Sbjct: 48  TKVEGFGRKFLEYVARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGM 107

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K  GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL
Sbjct: 108 MSKQGGGTSLYLGRLRPRGAPIR-DNGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYL 166

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+EE+L ++        R H                 Q+  W +   D   +   
Sbjct: 167 DVEHPDLEEWLSIQ--------REHS--------------PVQSLFWGVSVGDRWLE--- 201

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                        E  A  GE +        A W KML    E G P++ F+D  N ++P
Sbjct: 202 -------------EMIAGDGEKR--------ARWAKMLKSRAEVGIPYLFFRDNANQKAP 240

Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +  + +G  + +SNLCTEI L SS EE+ VC L S+NLL       ++  K    + T V
Sbjct: 241 EVFRALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLV 294

Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             LD+V+D           +E+A +    +RAIGLG++G+ S L    IP  SPEA    
Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRN 354

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            E  + I         E A+E         S W +   P D +  + E+++         
Sbjct: 355 AEIFKTIR--------ERAEE--------ASRWLRKRHPEDELAGVGELKER-------- 390

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802
                          RN+  +AIAPT + A I G VS SI+P   N Y+K          
Sbjct: 391 ---------------RNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFK 435

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N FL   L+++   +E +   +  H+GS+ +++ + D+ K +  T  EI  M L+  A+ 
Sbjct: 436 NPFLEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAAS 495

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           RQK IDQ QSLNL +  E   + ++ +   AW  GLK  YY  S+S
Sbjct: 496 RQKHIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQS 541


>gi|227545164|ref|ZP_03975213.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300909161|ref|ZP_07126622.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
 gi|227184847|gb|EEI64918.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300893026|gb|EFK86385.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
          Length = 723

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 168/664 (25%), Positives = 296/664 (44%), Gaps = 82/664 (12%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           ++F F  ++     Y +Y L  N     + + +  RVAM         E+ A++  + + 
Sbjct: 91  QNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEII 149

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +
Sbjct: 210 LREAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YEN 524
           K   D++ R   ++    +PD F + V QNA   LFSP    D+  +YG  F      + 
Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSP---YDVERVYGMPFSYVDITKE 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      +I+  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 327 YDNLVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNL 383

Query: 585 CTEITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI           + S  E  +   CNLGS N+      N  +      +I+  +R L
Sbjct: 384 CSEIAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIA-----NMMESPDFGKSIKAMMRGL 438

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + D+ +   +   +  N    ++GLG MG  S L   HI Y SP A+E        ++
Sbjct: 439 TRISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLN 498

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDEL--AMNRTSRL 744
           + ++ AS E+A+ER   +  F+ S +  G +    +    G  ++V   L   +      
Sbjct: 499 YWSLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIE 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK+ V   G+ N   +A+AP  + + I   + S+ P                    
Sbjct: 559 DWKKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHP-------------------- 598

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            ++N +++R    E MI  + Y    + N      D    + +A+++D   +I++ +  Q
Sbjct: 599 -IINRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRKVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + IDQ+ S+ L++                D+ + + L+ +   A+  G+K+ YY+R+ + 
Sbjct: 649 QHIDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTD 708

Query: 909 TSVE 912
            S E
Sbjct: 709 DSDE 712


>gi|227891213|ref|ZP_04009018.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
 gi|227867087|gb|EEJ74508.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
          Length = 723

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%)

Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           S   F+ +    D   + DF F+ ++     Y +Y L  + +   + + F  RVA     
Sbjct: 74  SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389
                EK A+E  + L    +  +TP+  N+G  R  +L SCFL  + DD+  I   +  
Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L++  GG+G + + +RG GA I G +G + GV+P +K+  D+    NQ G+R+GA  
Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL  +H D+E FL  +K   D++ R   ++    +PD + + V +N    LF P  V  
Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310

Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566
              +Y K F  +Y +  ++ D       + +K I A  L  ++  +  E+G+P++   D 
Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614
            N  +P    G +  SNLC+EI        +N+  E   +     CNLGS N++   A+ 
Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425

Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            F       ++    R L  V D  +   +   +  N     IGLG MG  + L    I 
Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726
           Y SPEA+E        +++  + AS ++A+ER   + +F+ S +  G +  D+       
Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539

Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+ D + +   ++  W  LK+ V   G+ + N +A+AP  +I+ I   + S+ 
Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKEHVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     ++N +++R    E  I  + Y    + N E +P     
Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887
            + +A++ D   +I++ +  Q+ +DQ  SL L++                D+ + + L  
Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687

Query: 888 IYRQAWLMGLKTTYYLRS 905
           +   A   G+K+ YY+R+
Sbjct: 688 LRNYAHYKGVKSIYYVRT 705


>gi|300214874|gb|ADJ79290.1| Ribonucleoside-diphosphate reductase [Lactobacillus salivarius CECT
           5713]
          Length = 723

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%)

Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           S   F+ +    D   + DF F+ ++     Y +Y L  + +   + + F  RVA     
Sbjct: 74  SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389
                EK A+E  + L    +  +TP+  N+G  R  +L SCFL  + DD+  I   +  
Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L++  GG+G + + +RG GA I G +G + GV+P +K+  D+    NQ G+R+GA  
Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL  +H D+E FL  +K   D++ R   ++    +PD + + V +N    LF P  V  
Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310

Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566
              +Y K F  +Y +  ++ D       + +K I A  L  ++  +  E+G+P++   D 
Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614
            N  +P    G +  SNLC+EI        +N+  E   +     CNLGS N++   A+ 
Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425

Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            F       ++    R L  V D  +   +   +  N     IGLG MG  + L    I 
Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLARNQIE 480

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726
           Y SPEA+E        +++  + AS ++A+ER   + +F+ S +  G +  D+       
Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGSY-FDTYLNQEFA 539

Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+ D + +   ++  W  LK+ V   G+ + N +A+AP  +I+ I   + S+ 
Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     ++N +++R    E  I  + Y    + N E +P     
Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887
            + +A++ D   +I++ +  Q+ +DQ  SL L++                D+ + + L  
Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPTGLYEWKNGRTDKMTTRDLSI 687

Query: 888 IYRQAWLMGLKTTYYLRS 905
           +   A   G+K+ YY+R+
Sbjct: 688 LRNYAHYKGVKSIYYVRT 705


>gi|260425806|ref|ZP_05779786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
 gi|260423746|gb|EEX16996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
          Length = 760

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 169/609 (27%), Positives = 270/609 (44%), Gaps = 89/609 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +GS I++  +  + R+A  LA  ET+ E     FY  L  F ++ +      +GT 
Sbjct: 19  FKEADGSPIDVTVEDSWRRIARSLASVETDAEGWEQRFYEALEDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RSVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVAGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKA----DSARLRMFNLS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W L           +YG                   KV+R + A
Sbjct: 195 VLVTDAFMEAVKADGSWEL-----------VYGD------------------KVYRTVKA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW +++   ++   P + F D  N  +   +V  + ++N C E  L         C L
Sbjct: 226 RDLWNRIMRATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSINL A      F      D  +L + + TAVR++DNV+D +   + +  +     R I
Sbjct: 282 GSINL-ARLVKQPFEAEAHLDEAELEALVATAVRMMDNVVDASRFPLPQQLEEAQNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +  + Y S EA    +  +  I+  +  ASVELA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMKGLRYGSKEAAAQTEAWLRLIARASYLASVELAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                  D+   LA   + L M+       D+++  ++  G+RN+   +IAPT TI+   
Sbjct: 396 -------DAEKYLA-TGNMLNMD-------DDVRDAIREHGIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           G VS  I+P +   Y +  +  D T     +V+   Q       M  DLK      G+ E
Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVDYAVQ-------MWRDLK------GDAE 487

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                L +    A  +DP   +   +  QKWID + S  +   E  S +    +Y QA+ 
Sbjct: 488 -----LPEYFVNAQTLDPQAHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQAYE 542

Query: 895 MGLK--TTY 901
            G K  TTY
Sbjct: 543 TGCKGCTTY 551


>gi|269925171|ref|YP_003321794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269788831|gb|ACZ40972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 811

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 149/502 (29%), Positives = 231/502 (46%), Gaps = 71/502 (14%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMC 353
           +I  DRY     NG+ +E  P+  ++RVA  +A  E   E +    + FY++L  F F+ 
Sbjct: 40  KIFLDRYARKDPNGTPLEHYPEEMWLRVAKAIAAVEPNPEAQRQWTLRFYDILQGFRFVP 99

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
               L  +G+       +CF+   P+D + GIF  +   A + + SGG+G + + +R  G
Sbjct: 100 GGRILSGAGSGAEVTYYNCFVIPSPEDSVEGIFRNITTAAHIMRRSGGVGVNLSSLRPRG 159

Query: 412 AHIHGTNGKSQGVIPFLKVAND-TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL-RKNT 469
           A+I   NG S G   +  + +D T   + QGG R+GA+   L+  H D+EEF++  RKN 
Sbjct: 160 AYIKTVNGTSSGPCSWAILYSDMTGKVIIQGGSRRGALMIMLDDDHPDIEEFVEYKRKNP 219

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G         N +  + D FM+ V ++  W L                            
Sbjct: 220 G----HIDHANLSVAVSDAFMEAVKKDLPWDL---------------------------- 247

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            + + KV++ I A  LWRK+    +    P + F D  N RS   +   +   N C E  
Sbjct: 248 -KWQGKVWKTIRARDLWRKIAESAWAYAEPGLVFIDRYNKRSNTWYFENIRCVNPCGEQG 306

Query: 590 LNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-E 644
           L        VCNLG++NLLA          FD++ LA+T R A+R LDNVID   +   E
Sbjct: 307 L----PPWGVCNLGALNLLAFVKHIDGETYFDFEDLANTARVAIRFLDNVIDATVYPFPE 362

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +   H  R  GLG MG    L  L + Y SPEA  + +     I   A  AS +LA E
Sbjct: 363 NEEAQKHGARRTGLGTMGLADVLIKLGVKYGSPEAEPLVERIYRTIRDAAYDASADLAAE 422

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G +  F    + QG F          +R+         LP +E++ +++  G+RN+  +
Sbjct: 423 KGPFPKFDRDKYMQGEF----------IRE---------LP-EEIQAKIRRQGIRNAVLL 462

Query: 765 AIAPTATIANICGVSQSIDPSY 786
             APT T +++ GV+  I+P +
Sbjct: 463 TQAPTGTTSSLAGVNSGIEPVF 484


>gi|90962207|ref|YP_536123.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius UCC118]
 gi|90821401|gb|ABE00040.1| Ribonucleoside-diphosphate reductase alpha chain [Lactobacillus
           salivarius UCC118]
          Length = 723

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 171/678 (25%), Positives = 303/678 (44%), Gaps = 90/678 (13%)

Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           S   F+ +    D   + DF F+ ++     Y +Y L  + +   + + F  RVA     
Sbjct: 74  SKYSFEFIEKLYDYLKKEDFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALY 132

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQE 389
                EK A+E  + L    +  +TP+  N+G  R  +L SCFL  + DD+  I   +  
Sbjct: 133 FGDGDEKLALELADELIHQRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINS 192

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L++  GG+G + + +RG GA I G +G + GV+P +K+  D+    NQ G+R+GA  
Sbjct: 193 ALQLSRIGGGVGINLSNLRGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGA 252

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL  +H D+E FL  +K   D++ R   ++    +PD + + V +N    LF P  V  
Sbjct: 253 VYLNVFHPDIEAFLSAKKENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGV-- 310

Query: 510 LHDLYGKEFEIAYENYERQADR--GEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566
              +Y K F  +Y +  ++ D       + +K I A  L  ++  +  E+G+P++   D 
Sbjct: 311 -ERVYHKPF--SYVDITKEYDNMVANPNIPKKVIKARDLEEQISKLQQESGYPYVINIDT 367

Query: 567 CNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANN 614
            N  +P    G +  SNLC+EI        +N+  E   +     CNLGS N++   A+ 
Sbjct: 368 ANRVNPIS--GKIVMSNLCSEILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASP 425

Query: 615 QFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            F       ++    R L  V D  +   +   +  N     IGLG MG  + L    I 
Sbjct: 426 NF-----GKSVEVMTRALTFVTDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIE 480

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI------ 726
           Y SPEA+E        +++  + AS ++A+ER   + +F+ S +  G +  D+       
Sbjct: 481 YGSPEALEFTSVYFMLLNYWTLVASNKIAKERKVTFDNFENSKYADGRY-FDTYLNQEFA 539

Query: 727 ---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+ D + +   ++  W  LK+ V   G+ + N +A+AP  +I+ I   + S+ 
Sbjct: 540 PKNARVKELFDGIFI--PTKSDWTSLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLH 597

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     ++N +++R    E  I  + Y    + N E +P     
Sbjct: 598 P---------------------IINRIEER---QERKIGKIYYPAPYLSN-ETLP----- 627

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDF 887
            + +A++ D   +I++ +  Q+ +DQ  SL L++                D+ + + L  
Sbjct: 628 YYKSAYDTDMRKVIDTYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSI 687

Query: 888 IYRQAWLMGLKTTYYLRS 905
           +   A   G+K+ YY+R+
Sbjct: 688 LRNYAHYKGVKSIYYVRT 705


>gi|227529512|ref|ZP_03959561.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350597|gb|EEJ40888.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
          Length = 723

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 172/660 (26%), Positives = 293/660 (44%), Gaps = 86/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F  ++     Y +Y L  N     + + +  RVAM         E+ A+   + +
Sbjct: 90  QQNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMILADEI 148

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TPT  N G  R  +  SCF     D++  I   +     L+K  GG+G + +
Sbjct: 149 IHQRYQPATPTFLNVGRKRRGEFVSCFAIQPTDNMNTIGRTINSALQLSKIGGGVGINLS 208

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I      + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  
Sbjct: 209 NLREAGAPIKKIENAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGA 268

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD F + V ++    LFSP    D+  +YGK F      E
Sbjct: 269 KKENADEKIRLKTLSLGVTVPDKFYELVEKDEDMYLFSP---YDVERVYGKPFSYVDITE 325

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 326 EYDNMVANDEIHK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRDNPID--GKIVMSN 382

Query: 584 LCTE--------ITLNSSSEET----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+E        I  +  S ET      CNLGS N+      N  +      +IR  VR 
Sbjct: 383 LCSEIAQVQTPSIVADDQSYETLGTDISCNLGSTNIA-----NMMNTPDFGRSIRAIVRG 437

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  + D+ +   +   KK N    +IGLG MG    L   HI Y SP AVE        +
Sbjct: 438 LTRISDVESLDVVPSIKKGNELSHSIGLGAMGLHGYLAKNHIQYGSPVAVEFTSVYFMLL 497

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI----GLLAEVRDELAMNRTSRLP 745
           ++ ++ AS E+A+ER   + +F+ S +  G +    +    G  +++  +L  N    +P
Sbjct: 498 NYWSLVASNEIAKERHETFHNFEKSKYADGSYFDKYVSKDWGPKSDLVKKLFAN--IHIP 555

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W +LK  V   G+ N   +A+AP  + + I   + S+ P                 
Sbjct: 556 TIDDWKKLKDDVMADGLYNEYRLAVAPNGSTSYINDSTASLTP----------------- 598

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               ++N +++R    E MI  + Y    + N      D    + +A+++D   +I++ +
Sbjct: 599 ----IINRIEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRTVIDTYA 645

Query: 862 RRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYLRS 905
             Q+ +DQ+ SL L++    P G              + L+ +   A+  G+K+ YY+R+
Sbjct: 646 AAQQHVDQSLSLTLFVRSTMPEGLYEWKNGRTNKMTTRDLNILRHYAYKKGIKSIYYVRT 705


>gi|241895722|ref|ZP_04783018.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871089|gb|EER74840.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 736

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 160/623 (25%), Positives = 282/623 (45%), Gaps = 82/623 (13%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
           R+ M +       E  A+   + +    +  +TP+  N+G +R  +L SCF+  V DD+ 
Sbjct: 138 RIVMNVLFYANGDETLAMNLADEMIHQRYQPATPSFLNAGRSRRGELVSCFILQVTDDMN 197

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I   +     L+K  GG+G   + +R  GA I G    + GV+P +K+  D+    NQ 
Sbjct: 198 AIGRVINSALQLSKIGGGVGIVLSNLREAGAPIKGIANAASGVVPVMKLLEDSFSYSNQM 257

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + +  N+   L
Sbjct: 258 GQRNGAGVVYLSVFHPDIMSFLATKKENADEKIRVKTLSLGLTVPDKFYELLKNNSDMFL 317

Query: 502 FSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP    D+  +YGK F   +I  E Y+      +I+  +KI A  L  ++  +  E+G+
Sbjct: 318 FSP---YDVERVYGKPFNYVDITAE-YDAMVANKQIRK-KKIRARELETEISKLQQESGY 372

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI-----TLNSSSEET-------AVCNLGSIN 606
           P+I   D  N  +P    G + SSNLC+EI         ++E+T         CNLGS N
Sbjct: 373 PYIINIDTVNAANPI--AGKIISSNLCSEILQVQRASQINNEQTYDELGTDVSCNLGSTN 430

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           ++   A   F       ++   VR L  V D  +   +   +  N    AIGLG MG  +
Sbjct: 431 IVNMMATKNF-----GKSVDAMVRALTFVSDQTDLDIVPSVRLGNRQTHAIGLGAMGLHA 485

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724
                H+ Y   EA++  +     ++++++ AS  +A+ER  ++  F+ S +  G +   
Sbjct: 486 FFAKNHMYYGDEEALDFTNAYFLMLNYYSLVASNNIAKERQSSFYEFEKSTYASGAYFDK 545

Query: 725 SIG-----LLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            I         +V++  +++   ++  W  L + VK  G+ N+  MAIAPT +I+ +   
Sbjct: 546 YINEDWSPKTDKVKEIFSVHHFPTKEDWVALAESVKQYGLYNAYRMAIAPTGSISYVNDA 605

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + S+ P                     ++N +++R    E  I  + Y    +G      
Sbjct: 606 TASLHP---------------------IINRVEER---QEKKIGKIYYPAPYLGT----- 636

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSG-------------- 882
            D    + +A+ +D   +I+  +  Q+ IDQ  +L L++    P+G              
Sbjct: 637 -DTLPYYESAYNMDMRRVIDVYAAAQQHIDQGMALTLFMRSTIPAGLYDWKDGHTEKMTT 695

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           + L+ +   A+  G+K+ YY+R+
Sbjct: 696 RDLNILRLYAYQKGIKSIYYIRT 718


>gi|10834910|ref|NP_066871.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 3]
 gi|5102911|dbj|BAA78728.1| UL39 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689311|dbj|BAA82935.1| UL39 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800004|dbj|BAB16549.1| UL39 protein [Gallid herpesvirus 3]
          Length = 797

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 175/669 (26%), Positives = 300/669 (44%), Gaps = 91/669 (13%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--- 350
           LGLQ  + Y+ Y   +   + E    FF+R+A   A + + K+         +S++    
Sbjct: 149 LGLQSALKYEEYLTELEDGKKESLCQFFVRLAAAAATEASNKKAFMSALGTEVSTWETAF 208

Query: 351 -----------FMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQENAMLAKYSG 398
                      F+ STP +   G      +SC+L      + +    A+ ++ +    + 
Sbjct: 209 TAFFFALARQIFVPSTPCMLFLGREGTSTASCYLMDPRTINTHDTLKAIADDIVPHLLAR 268

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G         G+G  +   N K+ G++P +KV +   +A N G +R   VC YLE WH D
Sbjct: 269 G---------GIGISLQHLNQKT-GLMPVMKVLDSLVMAANAGERRPTGVCVYLEPWHAD 318

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLH 511
           +   L++R     ++ RR  ++  A W  DL  KR        +N  WTLF     S L 
Sbjct: 319 IMSALNMRGMMATEESRRCDNVFIALWTCDLLFKRYERHANGEKNVTWTLFD-SRASILA 377

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FETGHPWITFKDPCN 568
            L+G EFE  Y   E +           ++++ +   M  ++     TG P+I FKD CN
Sbjct: 378 TLHGSEFEKEYNRLEAEG--------LGVASLPVRDLMFAIIKSAASTGSPFILFKDACN 429

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL-AHFANN---QFDYDKLAS 623
                   G  +  SNLCTEI   +      VC+L S+NL    F  N   +FD+  L  
Sbjct: 430 KHYITDTQGDAIAGSNLCTEIIQKTDGNTNGVCSLVSVNLARCVFDENGEKKFDFSALRR 489

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   +++++  +     K++     HR++G+G+ G  +AL  + +  +      + 
Sbjct: 490 AVRLATVFVNSIMSSSDVPTAKSRSGKDRHRSMGIGVQGLHTALLSMGLDLSDERVKPLN 549

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPID---SIGLLAEVRDELAM 738
            +  E +   A++ S E   E G  A++ F  S + +G    D   ++GL          
Sbjct: 550 KQIFELMLLEAMTVSCEFC-EGGLPAFADFSNSYYSRGRLHFDGWANVGL---------- 598

Query: 739 NRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                +P  W+ L++R++  G+ N+  +A+ PTA  A +  VS+S  P + N++ K   +
Sbjct: 599 ----SMPEEWNALRERIQASGLYNAQFVALMPTAASAQVTEVSESFLPVFSNMFNKVTTA 654

Query: 797 GDFTVVNSFLVNELKQ-------RDLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATA 848
           G+    N+ L+ EL++       R L   A +    +  + ++GN       LK  + TA
Sbjct: 655 GELLRPNNQLMGELREIYADNEDRRLKAIAALECANWCVETALGNKPECSQLLK--YKTA 712

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL------DFIYRQAWLMGLKT-TY 901
           FE D   LI+  + R  ++DQ+QS+ L++ E +   L      + + R A+  GLKT  Y
Sbjct: 713 FEYDQSLLIDLCADRAPFVDQSQSMTLFVTEAADGTLLASHVMNLLLR-AYKAGLKTGMY 771

Query: 902 YLRSRSATS 910
           Y + R AT+
Sbjct: 772 YCKIRKATN 780


>gi|251792577|ref|YP_003007303.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533970|gb|ACS97216.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           aphrophilus NJ8700]
          Length = 562

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 164/592 (27%), Positives = 262/592 (44%), Gaps = 116/592 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 58  EGYAEKFYHYMARGYYSLSSPIWSNFGLDRGLSISCFGSYIGDSINAIMSTVAEIGVMSK 117

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 118 LGGGTSGYFGDIRPRGSNIT-NNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 176

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D+EE+LD+       +   + +  ++ W+  +        AG                
Sbjct: 177 HGDIEEWLDIHTEGNPIQLMYYGVCVSHEWLESM-------KAG---------------- 213

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                +W K+L    ETG P+I FKD  N   P  
Sbjct: 214 --------DPYKRQ----------------IWAKLLQRKTETGIPYIFFKDNANAGRPDV 249

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +     ++H+SNLC+EI L SS +E+ VC L S+NLL         +D+   T   A  V
Sbjct: 250 YKDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLLY--------FDEWKDT--DAPEV 299

Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           L   +DI          N   +++A K    HRA+GLG++G+ S L   ++ + S EA++
Sbjct: 300 LTYFLDIVMSEFIAQSANIQFMDRANKFARRHRALGLGVLGWHSYLQSKNMAFDSFEAMQ 359

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             +   + +    + AS ELAQ  G     KG                            
Sbjct: 360 HNNIIFKLLQEKTLKASKELAQRFGEPEILKG---------------------------- 391

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800
                          G RN+  M++APT + + I G VS SI+P   N YVK        
Sbjct: 392 --------------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVV 437

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N FL   LK++ L  + +   +  +DGS+ ++  + +D K++  T  EI  + +I+ A
Sbjct: 438 YKNPFLEALLKRKGLDRDDIWESILLNDGSVQHLTELTEDEKEVFKTFSEISQLSVIQQA 497

Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++RQK+IDQ QS+N+ +   +  K L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 498 AQRQKYIDQGQSVNIMVHPATPAKDLNQLYLTAEELGLKSIYYQYSMSAAQV 549


>gi|242242100|ref|ZP_04796545.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
 gi|242234413|gb|EES36725.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
          Length = 698

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 160/609 (26%), Positives = 273/609 (44%), Gaps = 77/609 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  + D L  I         L+K
Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571
            + ++  + Y+       I+  +K +     R+ML M+ +T    G+P++ FKD  N   
Sbjct: 313 DDIDLE-KYYDDMVANPNIEKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 366

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
              ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  
Sbjct: 367 ANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIV-----NVMESG 421

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S E
Sbjct: 422 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 481

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A + A+     +++++I  S+E+A+ERG  Y  F+ S +  G +             E  
Sbjct: 482 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 537

Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +  +L           W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P   
Sbjct: 538 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 594

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V+++++R   +      + +          +  +    + +
Sbjct: 595 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 626

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AF  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 627 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686

Query: 907 SATSVEKST 915
              SVE+ T
Sbjct: 687 -LLSVEECT 694


>gi|304381651|ref|ZP_07364300.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304339754|gb|EFM05699.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 701

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|21282422|ref|NP_645510.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482988|ref|YP_040212.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485603|ref|YP_042824.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651568|ref|YP_185667.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160290|ref|YP_493419.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|161508996|ref|YP_001574655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141145|ref|ZP_03565638.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253732822|ref|ZP_04866987.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|284023752|ref|ZP_06378150.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 132]
 gi|297208542|ref|ZP_06924971.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297590339|ref|ZP_06948978.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912634|ref|ZP_07130077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|14329709|emb|CAC40667.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus]
 gi|21203859|dbj|BAB94558.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241117|emb|CAG39795.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244046|emb|CAG42472.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285754|gb|AAW37848.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126264|gb|ABD20778.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|160367805|gb|ABX28776.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253729187|gb|EES97916.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|269940308|emb|CBI48685.1| ribonucleoside-diphosphate reductase alphachain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|283470025|emb|CAQ49236.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|296886797|gb|EFH25701.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297576638|gb|EFH95353.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694062|gb|ADI97284.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886880|gb|EFK82082.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332441|gb|ADL22634.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438844|gb|ADQ77915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315196403|gb|EFU26754.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|329313452|gb|AEB87865.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728551|gb|EGG64984.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 701

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|258423380|ref|ZP_05686271.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
 gi|257846441|gb|EEV70464.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
          Length = 718

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++    N +F    
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMENGKF---- 443

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 444 -RDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 707 LLSVEECT 714


>gi|254420375|ref|ZP_05034099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
 gi|196186552|gb|EDX81528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
          Length = 753

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 181/643 (28%), Positives = 276/643 (42%), Gaps = 109/643 (16%)

Query: 318 QAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF- 372
           +A + RVA  LA  E  K +   RA  F   L ++ F+ +   L  +GT R   L +CF 
Sbjct: 30  EATWDRVAAALAEAEPTKTRARWRA-RFRETLDAYRFLPAGRILAGAGTGRAVTLFNCFV 88

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  VPDDL GIF  L+E A+  +  GG+G D++ VR  GA + G   ++ G + F+ V +
Sbjct: 89  MGVVPDDLDGIFQHLREAAVTLQQGGGVGMDFSTVRPSGALVRGVGAEASGPLSFMDVWD 148

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                +   G+R+GA+   L   H D+E F+D ++    D  R  + N +  +PD FM  
Sbjct: 149 SMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DAVRFRNFNLSVLVPDAFMAA 204

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +  +A W L                F+            GEI+  R + A  LW +++  
Sbjct: 205 LDADADWPLV---------------FD------------GEIR--RTVRATDLWTRLMQA 235

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P + F D  N  +   H  V+ +SN C E  L         C LGSINL A   
Sbjct: 236 TYDAAEPGVIFIDRVNAANNLAHCEVIAASNPCGEQML----PPYGACLLGSINL-ARLV 290

Query: 613 NNQFDYD------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +  F+ D      KLA   RTAVR+LDNVIDI+   +   +      R +GLG+ G   A
Sbjct: 291 SAPFEPDAALDEQKLADLTRTAVRMLDNVIDISRFPLPAQEAEARAKRRLGLGVTGLADA 350

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y    AV +    +  I   A  AS ELA E+GA+      L+D  +    ++
Sbjct: 351 LIFCGARYGEDRAVALTGRWLGLIRREAYRASAELAAEKGAF-----PLYDPAMLQRPNL 405

Query: 727 GLL-AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDP 784
             L AE R+ + ++                 G+RN    +IAPT T + + G VS  I+P
Sbjct: 406 ASLDAETRELIGLH-----------------GLRNGCLTSIAPTGTTSLLAGNVSSGIEP 448

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y +  M  D T          ++ +  ++  ++  K   G    ++  P D    
Sbjct: 449 VFAFAYTRKVMQPDGT----------RREEAVEDYALALWKTLKGPDAPLDSAPGD---A 495

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK- 898
             +A  + P   +   +  Q  ID + S  +   E     +DF     +YRQ + MG K 
Sbjct: 496 FVSAQTLTPEHHLRMQAAAQAQIDSSISKTINCPE----NIDFEAFSDVYRQGYRMGCKG 551

Query: 899 -TTYYLR--SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            TTY     + S  SVE            +VP   P+S    L
Sbjct: 552 LTTYRPNAITGSVLSVESPA---------SVPAAAPSSDVDPL 585


>gi|148267191|ref|YP_001246134.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393240|ref|YP_001315915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253315836|ref|ZP_04839049.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255005522|ref|ZP_05144123.2| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794948|ref|ZP_05643927.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|296275140|ref|ZP_06857647.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MR1]
 gi|147740260|gb|ABQ48558.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945692|gb|ABR51628.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|257788920|gb|EEV27260.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|312829223|emb|CBX34065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129413|gb|EFT85406.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329724567|gb|EGG61074.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 701

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|90407599|ref|ZP_01215780.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90311302|gb|EAS39406.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 557

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 166/610 (27%), Positives = 266/610 (43%), Gaps = 127/610 (20%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  + +  +  S+P   N G       SCF +++ DD+  I     E  M++K  GG 
Sbjct: 46  KFYGYMEAGFYSLSSPVWSNFGKDSGLPVSCFGSSITDDIGNILFTEAEVGMMSKLGGGT 105

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA I   NG S G   F+++       V+QG  R+G   AYL   H D  
Sbjct: 106 SAYFGHLRHRGATIK-NNGVSSGAPHFMQLFETMVDVVSQGSVRRGRFAAYLPIEHKDAN 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD+       +  TH +     + D +++++ +                    KE  +
Sbjct: 165 EFLDIGSEGNVIQNLTHGIT----VTDAWLQKMIEG------------------DKEKRV 202

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN---IRSPQQHVG 577
                                   LW K++    E G+P+I F D  N   + + ++H  
Sbjct: 203 ------------------------LWAKVIQRRNEMGYPYILFSDNANNQTVDTYKKHDL 238

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVLDNV 635
            +++SNLCTEI L +  + + VC L SINLL         Y+K   T  + T +  LD V
Sbjct: 239 KINASNLCTEIMLPAHDKWSFVCVLSSINLL--------HYEKWKDTDAVETLIYFLDAV 290

Query: 636 IDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPYASP 677
           +      +E+ + SN                   ++RA+G+G++G+ S L    +P+   
Sbjct: 291 VTEFLDKLEEYRDSNERADQLVFLFMEKAYNFCKSNRALGMGVLGWHSLLQQEMLPWEGR 350

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  + I   +  AS  LA + G  S  +G                        
Sbjct: 351 DAAKLNLEIFKLIKQKSYQASASLADKFGEPSILEG------------------------ 386

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS 796
                              G RN+   AIAPT + A I G VSQ I+P + N YVK    
Sbjct: 387 ------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNCYVKDISK 428

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
              T+ N FL   L+++    + +  D++ HDGS+ +++ + ++ KK+  T  EID M +
Sbjct: 429 IKTTIKNPFLEKLLEEKGFNTKQVWLDIRDHDGSVQHLDFLTEEEKKVFKTFPEIDQMSI 488

Query: 857 IESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---SV 911
           I+ AS RQ +IDQ QSLNL +  D P  K ++ +Y  AW MG+K+ YY  S +A    + 
Sbjct: 489 IDQASTRQTYIDQGQSLNLMIHPDTPV-KDINQLYLSAWKMGIKSLYYQHSMNAAQKLNQ 547

Query: 912 EKSTLKGVDG 921
           ++S  K  +G
Sbjct: 548 QRSNCKACEG 557


>gi|315194350|gb|EFU24742.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 701

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NLMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|295406452|ref|ZP_06816258.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|294968597|gb|EFG44620.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
          Length = 698

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|83943745|ref|ZP_00956203.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
 gi|83954746|ref|ZP_00963457.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83841030|gb|EAP80201.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83845425|gb|EAP83304.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
          Length = 760

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 164/593 (27%), Positives = 261/593 (44%), Gaps = 92/593 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E   EK    FY  L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARDLAQVEKAPEKWEEAFYEALEDFKFLPAGRITAGAGTARRVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V +     +  
Sbjct: 97  AGIFDMLKEAAVTMQQGGGIGYDFSTIRPRGADVLGVSADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM  V  +A W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMDAVKADASWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L               +F                KV+R + A  LW +++   +E   P 
Sbjct: 213 L---------------QFNG--------------KVYRTVQARDLWNRIMKATYEFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGSIN+    +     N Q
Sbjct: 244 VIFIDRINEANNLSYCETIAATNPCGEQPL----PPYGACLLGSINMARMVSDPFGDNPQ 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D + L   + TAVR++DNV+D++   +++ +      R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDVEALNKLVATAVRMMDNVVDVSKFPLDEQQAEAKAKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE-VRD 734
           S  A E  +  ++ I+  A  ASV+LA+E+GA+  F+   +        ++  + E VRD
Sbjct: 360 SDAAAEQTEAWLKAIARAAYLASVDLAKEKGAFPLFEADAY----LASGTMQQMDEDVRD 415

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
            +A N                 G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 416 AIAEN-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            +  D +     +V+   Q  RDL  +A + D   +  ++  ++ +     K+ A A   
Sbjct: 459 VLQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAPLDHV-----KMQAAA--- 510

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                       QKW+D + S  +   E  S      +Y  AW  G K  TTY
Sbjct: 511 ------------QKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTY 551


>gi|324111309|gb|EGC05291.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 528

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/559 (28%), Positives = 258/559 (46%), Gaps = 69/559 (12%)

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+
Sbjct: 7   AVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQ 66

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP 
Sbjct: 67  GAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP- 125

Query: 506 EVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
              D+  +YGK F +IA  E+Y+       I+  + I+A   ++++  + FE+G+P+I +
Sbjct: 126 --YDVERVYGKPFADIAISEHYDELVADERIRK-KYINARDFFQRLAEIQFESGYPYIMY 182

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N +AH 
Sbjct: 183 EDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN-IAH- 238

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D    A T+ TAVR L  V DI +  ++   +  N    AIGLG M     L   
Sbjct: 239 ---TMDSPDFARTVETAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 295

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--- 726
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +   
Sbjct: 296 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGN 355

Query: 727 -----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 356 WQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 415

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + + K   +G       F+ NE       + A+  D                 
Sbjct: 416 IHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD----------------- 451

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 452 -------AYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 504

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+R R   ++E + ++G
Sbjct: 505 LYYIRLRQ-MALEGTEIEG 522


>gi|253731357|ref|ZP_04865522.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724882|gb|EES93611.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|302750628|gb|ADL64805.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|320139938|gb|EFW31799.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141973|gb|EFW33801.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 698

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|82750435|ref|YP_416176.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus RF122]
 gi|82655966|emb|CAI80370.1| ribonucelotide diphosphate reductase alpha chain [Staphylococcus
           aureus RF122]
          Length = 698

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIQRDISCNLGSLNIV-----NVMESGK 422

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|323438920|gb|EGA96655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O11]
 gi|323441868|gb|EGA99508.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O46]
          Length = 698

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 134 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 193

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 194 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 253

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 254 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 313

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 314 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 367

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 368 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 422

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 423 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 482

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 483 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 540

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 541 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 594

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 595 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|322387900|ref|ZP_08061507.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
 gi|321141173|gb|EFX36671.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
          Length = 719

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 175/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTS 742
           +++  +  S  +A+ERG  + +F+ S +  G  F   + G      D +      +   S
Sbjct: 495 LNYWTLVESNNIARERGITFHNFEKSDYANGTYFDKYTSGQFVPKSDRVKELFEGIFIPS 554

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P+G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|116617383|ref|YP_817754.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096230|gb|ABJ61381.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 723

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 163/642 (25%), Positives = 282/642 (43%), Gaps = 77/642 (11%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N     + + +  RVAM         E  A+   + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGAYYI-ETYEDRVAMNALYYADGNENLALRLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR  GA + G + 
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNVREAGAPVMGIDN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 AAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKKENADEKIRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    +PD F   V QN    LFSPD+V  ++       +I  E Y+      +I+  ++
Sbjct: 283 SLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YDNMVANDKIRK-QR 340

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597
           I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+EI    +  E   
Sbjct: 341 IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSEILQVQTPSEIDN 398

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKA 646
                       CNLGSIN++     N F       ++ T VR L  V D  N   +   
Sbjct: 399 EQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTFVSDSSNLDVVPSI 453

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
              N    AIGLG MG  +      + Y   EA++        +++++I +S+ +A+ER 
Sbjct: 454 DLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEEALDFTSTFFMMLNYYSIKSSMGIAKERH 513

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759
             +  F  S +  G +    +      + E         +  +   W +LK+ V   GM 
Sbjct: 514 ETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDWAQLKEDVAKYGMY 573

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+   AIAPT +I+ +   + S+ P                     +VN++++R    E 
Sbjct: 574 NAYRHAIAPTGSISYVNDATASLLP---------------------IVNKIEER---QEG 609

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877
           MI  + Y    + N E +P      + +A++ D   +I+  +  Q+ IDQ  +L L++  
Sbjct: 610 MIGKVYYPAPGLSN-ETMP-----YYVSAYDTDMRRVIDVYAAAQEHIDQGMALTLFMRS 663

Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                         ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 664 TLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705


>gi|88194507|ref|YP_499302.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|294849401|ref|ZP_06790144.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295427308|ref|ZP_06819943.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|87202065|gb|ABD29875.1| ribonucleotide-diphosphate reductase alpha chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|294823933|gb|EFG40359.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295128696|gb|EFG58327.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 721

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 157 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 216

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 217 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 276

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 277 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 336

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 337 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 390

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 391 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 445

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 446 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 505

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 506 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 563

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 564 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 617

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 618 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 650

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 651 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 709

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 710 LLSVEECT 717


>gi|269202351|ref|YP_003281620.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074641|gb|ACY10614.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 701

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGIAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 485

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 486 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 543

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 544 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 597

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 598 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|15923721|ref|NP_371255.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926408|ref|NP_373941.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus N315]
 gi|156979059|ref|YP_001441318.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|258418264|ref|ZP_05682529.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|258421561|ref|ZP_05684486.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|258430756|ref|ZP_05688468.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|258441752|ref|ZP_05691024.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|258445807|ref|ZP_05693984.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|258449618|ref|ZP_05697720.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|258454018|ref|ZP_05701990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282894499|ref|ZP_06302728.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|282926596|ref|ZP_06334226.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|13700622|dbj|BAB41919.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246500|dbj|BAB56893.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156721194|dbj|BAF77611.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|257839057|gb|EEV63536.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|257842487|gb|EEV66911.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|257849428|gb|EEV73398.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|257852221|gb|EEV76148.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|257855383|gb|EEV78321.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|257857126|gb|EEV80025.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|257863883|gb|EEV86639.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282591489|gb|EFB96561.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|282763212|gb|EFC03343.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|285816433|gb|ADC36920.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus aureus 04-02981]
          Length = 718

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 707 LLSVEECT 714


>gi|297245178|ref|ZP_06929052.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297177849|gb|EFH37098.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
          Length = 721

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 157 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 216

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 217 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 276

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 277 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 336

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 337 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 390

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 391 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 445

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 446 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 505

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 506 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 563

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 564 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 617

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 618 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 650

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 651 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 709

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 710 LLSVEECT 717


>gi|254362524|ref|ZP_04978627.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261494147|ref|ZP_05990650.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496012|ref|ZP_05992422.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094124|gb|EDN75023.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261308262|gb|EEY09555.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310313|gb|EEY11513.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 555

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 163/588 (27%), Positives = 261/588 (44%), Gaps = 108/588 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 51  EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 110

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 111 IGGGTSAYFGDIRPRGSLIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 169

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 170 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 206

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 207 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 242

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      +H+SNLCTEI L SS+EE+ VC L S+NLL       FD  K      T    
Sbjct: 243 YKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSMNLLY------FDEWKDTDAPETLTYF 296

Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           LD V+        +   +++A +    HRA+GLG++G+ S L   +I + S +A++  +E
Sbjct: 297 LDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNE 356

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + +    + AS ELAQ  G     +G                                
Sbjct: 357 IFKTLQAKTLKASQELAQRFGEPEILEG-------------------------------- 384

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G RN+  M+IAPT + + I G VS S++P   N YVK          N 
Sbjct: 385 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 434

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL   L+++ L  E + + +  +DGS+ ++E++ +  K++  T  EI  + +I+ A++RQ
Sbjct: 435 FLEKLLQEKGLDTEEIWTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQ 494

Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           K+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 495 KYIDQGQSINVMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 542


>gi|148543560|ref|YP_001270930.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri DSM 20016]
 gi|184152967|ref|YP_001841308.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri JCM 1112]
 gi|227363480|ref|ZP_03847602.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|325681910|ref|ZP_08161428.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
 gi|148530594|gb|ABQ82593.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224311|dbj|BAG24828.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071494|gb|EEI09795.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|324978554|gb|EGC15503.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
          Length = 723

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 167/662 (25%), Positives = 296/662 (44%), Gaps = 78/662 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           ++F F  ++     Y +Y L  N     + + +  RVAM         E+ A++  + + 
Sbjct: 91  QNFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEII 149

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +
Sbjct: 210 LREAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F + V QNA   LFSP +V  ++ +     +I  E Y 
Sbjct: 270 KENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKE-YN 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +I+  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 NLVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCS 385

Query: 587 EITL---------NSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI           + S  E  +   CNLGS N+      N  +      +I+  +R L  
Sbjct: 386 EIAQVQVPAQVNDDQSYSEMGIDISCNLGSTNIA-----NMMESPDFGKSIKAMMRGLTR 440

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           + D+ +   +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ 
Sbjct: 441 ISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYW 500

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI----GLLAEVRDEL--AMNRTSRLPW 746
           ++ AS E+A+ER   +  F+ S +  G +    +    G  ++V   L   +       W
Sbjct: 501 SLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +LK+ V   G+ N   +A+AP  + + I   + S+ P                     +
Sbjct: 561 KKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHP---------------------I 599

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +N +++R    E MI  + Y    + N      D    + +A+++D   +I++ +  Q+ 
Sbjct: 600 INRVEER---QEKMIGKIYYPAPYLSN------DTMPYYRSAYDMDMRKVIDTYAAAQQH 650

Query: 867 IDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ+ S+ L++                D+ + + L+ +   A+  G+K+ YY+R+ +  S
Sbjct: 651 IDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTDDS 710

Query: 911 VE 912
            E
Sbjct: 711 DE 712


>gi|269986513|gb|EEZ92798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 756

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 181/651 (27%), Positives = 291/651 (44%), Gaps = 107/651 (16%)

Query: 291 FAFEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  +I Y++Y L  + G+R E  P   + R++  LA  E + +K+ +E  FY LL
Sbjct: 12  FDNDELRSRIFYEKYSLSDLEGNRTEKTPIEMWKRISRELASVEKDDKKKDIENNFYRLL 71

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             F F+     LF +G  H   L +C  L    D L  I    +E A    Y GG+G D 
Sbjct: 72  EDFKFVPGGRILFGAGANHKATLLNCHHLPITKDSLEAIHDTAKEMARTYSYGGGVGIDI 131

Query: 405 TPVRGLGAHIHGTNGKSQ-----GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           + VR        ++G  Q       + F+K+ + T   + Q G+R GA    L+  H D+
Sbjct: 132 SIVRPE----RSSSGIMQQDFRLASVSFMKLYSITTGIIGQTGRR-GAWMITLDVTHPDI 186

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E F+ ++K    D++     N +  + D FM  V  +  +TL   +E             
Sbjct: 187 ESFVTIKK----DKKSVRYANISVKVYDDFMDAVENDKIFTLHFKNE------------- 229

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG 577
                        +++  ++I A+ LW+K +     TG P I F D     SP ++    
Sbjct: 230 -------------KVEFKKEIKALDLWKKRIDTAVNTGDPGIMFWDRMKSESPTEYDEKM 276

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRV 631
            +  +N C+E  L    E    C+LG+INL  +F  NQ       D++ L  T+R  VR 
Sbjct: 277 AIKGTNPCSEQPL----ENYGACDLGAINL-DYFVKNQCTDKAEVDWENLDKTVRYGVRF 331

Query: 632 LDNVIDI--NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           LDNV+D   N H +++        R IGLG+MG  + L  +++ Y S +A+E  D  M+ 
Sbjct: 332 LDNVLDYSYNRHALKEQADETVYARRIGLGIMGLANMLISMNLRYDSDKAIEFVDSLMKK 391

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A   S  LA E+G++ +F                 +AE    L  N   RL    L
Sbjct: 392 IKETAYDESSNLAVEKGSFPAF-----------------VAE--KHLQRNFVKRLDKKLL 432

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFL 806
            K  K  G+RN+  + +APT +I+++ GVS  I+P     Y + + S   G F V++ F+
Sbjct: 433 DKISKN-GLRNACILTVAPTGSISSMAGVSGGIEPICALSYTRRSESLSEGKFEVLDPFV 491

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              + +  + D++ + +L                      TA +IDP + ++  +  QK 
Sbjct: 492 KRYMDKFKIRDKSTLPEL--------------------FVTAHKIDPFFRVKMQATIQKH 531

Query: 867 IDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ID   + ++NL  D    + +D IYR AW +G K+    R  S   + K+T
Sbjct: 532 IDSSISSTVNLSAD-TDAETVDKIYRYAWKLGCKSITVYREGSKDDILKAT 581


>gi|289749069|ref|ZP_06508447.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
 gi|289689656|gb|EFD57085.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
          Length = 611

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 212/473 (44%), Gaps = 52/473 (10%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 107 IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 166

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 167 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 226

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 227 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 286

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 287 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 343

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 344 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 376

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 377 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 432

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG+M
Sbjct: 433 LGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVM 492

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           G    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S
Sbjct: 493 GLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 545



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+   +P K++     +R+G +  FD ++I  A+ +A         +R +   D      
Sbjct: 43  SVGVSWPAKVR-----RRDGTLVPFDIARIEAAVTRA---------AREVACDDPD---M 85

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             TV + +       I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 86  PGTVAKAVADALGRGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 142


>gi|169834419|ref|YP_001694621.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996921|gb|ACA37533.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 719

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 177/660 (26%), Positives = 291/660 (44%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   +++     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYNVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  + +F      KGS +D+   G F   S  +    +D     
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFI-- 552

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + E IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|158079505|ref|YP_001504318.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890349|dbj|BAF81477.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 716

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 169/663 (25%), Positives = 288/663 (43%), Gaps = 90/663 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y + F F+ ++G    Y +Y +  + G R    + +  RVA          E+ A++  +
Sbjct: 81  YSKKFRFDTFMGAYRFYKQYAMKTDDGER--YLERYEDRVAFNALTMGDGDEELAMKIAD 138

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L +  +  +TPT  N+G  R  +  SCFL  V D +  I   L     L+K  GG+G +
Sbjct: 139 ELINRRYQPATPTFLNAGRLRRGEYVSCFLIQVEDSMSSIGRTLNSALQLSKLGGGVGIN 198

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R LG  I G  G   GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL
Sbjct: 199 LSNLRALGDPIKGIEGAGSGVVPVMKMLEDGFRYANQLGQRQGAGAVYLNVFHADIMDFL 258

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             RK   +  ++   ++    +PD F +         LFSP +V+  + +     +I  E
Sbjct: 259 STRKENAESAKQIKTLSLGVVVPDKFYELAESGDVIHLFSPYDVAKEYGVPFSFVDIDSE 318

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y        I+  + ++A  L  ++  +  E+G+P+I      N  +P    G +  SN
Sbjct: 319 -YNNMIQNPNIRS-KVMNARDLEEEISRLQQESGYPYIMNVSTVNKANPID--GKIIMSN 374

Query: 584 LCTEI-------TLNSSS--EETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        LN     EE      CNLGSIN+L     +    + + ++I T VR 
Sbjct: 375 LCSEILQVQTPSKLNDEQVYEELGADISCNLGSINILNLLETS----NDVVASIETMVRA 430

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  + D+ N   +   K  N     IGLG MG  +      + Y SPE++E+ D   E I
Sbjct: 431 LTYITDVSNIKAVPTIKNGNDKAHTIGLGAMGLHAWFASNQVEYGSPESIEMTDALFELI 490

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRT 741
           ++  + AS ++A+ER   + +F+ S +  G +  + +  L        AEV D + +   
Sbjct: 491 NYATLVASNKIAKERDTTFYNFENSKYADGSYFDEYVPTLSQEISSKVAEVFDGVVLPNV 550

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W+ L+  +   G+ + N +A+AP  +IA +   + S+ P                 
Sbjct: 551 K--DWETLRNSIIESGLYHQNRLAVAPNGSIAYVNETTSSLHP----------------- 591

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEIDPMWLI 857
               +++ +++R              DG  G       R+ +     + +A++   + +I
Sbjct: 592 ----IISMIEER-------------QDGKTGKTYYPAPRLSEKTIPYYKSAYDTSMIDVI 634

Query: 858 ESASRRQKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYY 902
              +  QK IDQ  SL L++                  S + L  +   AW  G+KT YY
Sbjct: 635 NVYATAQKHIDQGMSLTLFMRSELPENLYPWKVEGGATSTRDLTLLRHYAWKKGIKTIYY 694

Query: 903 LRS 905
           +R+
Sbjct: 695 VRT 697


>gi|151220912|ref|YP_001331734.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257424851|ref|ZP_05601278.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427519|ref|ZP_05603918.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430150|ref|ZP_05606534.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432851|ref|ZP_05609211.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435755|ref|ZP_05611803.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|258452939|ref|ZP_05700933.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282903361|ref|ZP_06311252.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905139|ref|ZP_06312997.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908117|ref|ZP_06315948.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910376|ref|ZP_06318180.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913571|ref|ZP_06321360.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282922027|ref|ZP_06329724.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282923490|ref|ZP_06331170.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283769894|ref|ZP_06342786.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283957563|ref|ZP_06375016.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500616|ref|ZP_06666467.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509564|ref|ZP_06668275.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524150|ref|ZP_06670837.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|150373712|dbj|BAF66972.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257272421|gb|EEV04544.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275712|gb|EEV07185.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279347|gb|EEV09948.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282266|gb|EEV12401.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284946|gb|EEV15065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257859450|gb|EEV82304.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282314358|gb|EFB44748.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322603|gb|EFB52925.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325768|gb|EFB56076.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327782|gb|EFB58064.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331964|gb|EFB61475.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282593685|gb|EFB98677.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282596316|gb|EFC01277.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283460041|gb|EFC07131.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283791014|gb|EFC29829.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921113|gb|EFD98174.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095621|gb|EFE25882.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467661|gb|EFF10176.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
          Length = 718

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 279/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +       + +A
Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSA 647

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 707 LLSVEECT 714


>gi|225870272|ref|YP_002746219.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. equi 4047]
 gi|225699676|emb|CAW93382.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. equi 4047]
          Length = 719

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 165/609 (27%), Positives = 269/609 (44%), Gaps = 78/609 (12%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           ET  +  A+E  N      +  +TP+  N+G +R  +L SCFL  V DD+  I  ++   
Sbjct: 136 ETLAKDLAIEMINQ----RYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSA 191

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L++  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   
Sbjct: 192 LQLSRIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVV 251

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H D+  FL  +K   D++ R   ++    +PD F +    NA   LFSP  V   
Sbjct: 252 YLSVFHPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARHNADMYLFSPYSVERE 311

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + L     +I     E  A+    K   KI A  L  ++  +  E+G+P++   D  N  
Sbjct: 312 YGLPFNYIDITSMYDELVANPNITKT--KIKARDLETEISKLQQESGYPYVINIDTANRS 369

Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI        +N + E   +     CNLGS N+L    +  F  
Sbjct: 370 NPID--GKIIMSNLCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-- 425

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +IR   R L  V D  N   +   K  N      GLG MG  S L   HI Y SP
Sbjct: 426 ---GRSIRAMTRALTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSP 482

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           E++E  D     +++  +  S ++A+ER   +  F+ S +  G +    I      + EL
Sbjct: 483 ESIEFTDIYFMLMNYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSEL 542

Query: 737 --AMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             ++ +   +P    W  L++ + T G+ + N +A+AP  +I+ I   S SI P  Q + 
Sbjct: 543 VKSLFKDHFIPQAADWKALRQAIMTDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI- 601

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                             E +Q     E  I  + Y    + + + IP      + +A++
Sbjct: 602 ------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYD 632

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMG 896
           +D   +I+  +   K +DQ  SL L+L               + + + L  +   A+  G
Sbjct: 633 MDMRKVIDVYAAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKG 692

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 693 IKSIYYIRT 701


>gi|163744560|ref|ZP_02151920.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381378|gb|EDQ05787.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 759

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 164/619 (26%), Positives = 264/619 (42%), Gaps = 87/619 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E++ +    +F+  L  F ++ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARDLAQVESDADGWEDKFFGALEDFKYLPAGRITAGAGTARRVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V +     +  
Sbjct: 97  SGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVLGVSADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGSWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L           L+G                   KV++ + A  LW  ++   +    P 
Sbjct: 213 L-----------LFGG------------------KVYKTVQARDLWNNIMQATYSYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +   + ++N C E  L         C LGSINL    A        
Sbjct: 244 VIFIDRINAANNLNYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAQPFDEAAH 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D D ++  + TAVR++DNV+D++   + +        R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDQDAMSELVATAVRMMDNVVDVSNFPLPEQANEAQNKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  ++ I+  A  ASV+LA+E+GA+  F            D+   LA     
Sbjct: 360 SDEAAAQTESWLKAIARAAYLASVDLAKEKGAFPLF------------DAEKFLA----- 402

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
              + T +   D+++  ++  G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 403 ---SGTMQQMDDDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   Q  +W E +  D    D  +      P D  K+ A A      
Sbjct: 460 LQKDGSRTEEEVVDYAVQ--MWRE-LKGDTPLPDYFVNAQTLPPADHVKMQAAA------ 510

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
                    QKWID + S  +   E  S      +Y QAW MG K     R    T    
Sbjct: 511 ---------QKWIDSSISKTINCPEDISFDDFKDVYMQAWDMGCKGCTTYRPNDVTG--- 558

Query: 914 STLKGVDGKLNAVPVTDPN 932
           S L     K +  P   P+
Sbjct: 559 SVLSVSSEKTDKAPADSPD 577


>gi|9629835|ref|NP_045319.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 1]
 gi|1710388|sp|P50646|RIR1_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|995643|emb|CAA90929.1| UL39 [Bovine herpesvirus 1]
 gi|1149579|emb|CAA88900.1| UL39 [Bovine herpesvirus 1]
 gi|2653308|emb|CAA06094.1| ribonucleotide reductase large subunit [Bovine herpesvirus type
           1.1]
          Length = 787

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 175/663 (26%), Positives = 297/663 (44%), Gaps = 72/663 (10%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLA---LKET--------EKEKRAVE 341
           LGLQ  + Y+  +L  + G  IE    FF+R+A   A   ++E         E       
Sbjct: 133 LGLQSALKYEEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 192

Query: 342 FYNLLSSFH---FMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
           F   L++ +    + +TP +  +G     L+SC+L    V      +     E A +   
Sbjct: 193 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLN 252

Query: 397 SGGLGNDWTPV-RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
            GG+G  +    R +      +    +G++  LK+ +  A+A+N   +R   +C YLE W
Sbjct: 253 RGGIGISFQSFDRAV------SRDCKRGIMGALKLLDSMAMAINSDSERPTGICVYLEPW 306

Query: 456 HIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508
           H DV   L++R     D+  R  ++ +  W+PDL   R        +   WTLF  D  S
Sbjct: 307 HCDVRAVLNMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLFD-DRAS 365

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L  L+G  F   YE  ER+    E    + ++ +     ++  +  TG P++ FKD CN
Sbjct: 366 HLSRLHGPAFTAEYERLEREGLGVETVPVQDLAFL-----IVRSIVMTGSPFVMFKDACN 420

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLA 622
                   G  +  SNLCTEI   +S +   VCNL S+NL       +     FD+  L+
Sbjct: 421 RHYHMDTAGDALTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALAFDFAALS 480

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           +   TA   ++ ++    +  EKA +    HR++G+G  G  + L  L +   SP A  +
Sbjct: 481 TAAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRL 540

Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNR 740
             E  E +    ++ S  L +   A +  F  S + +G+ P D   G++      L++ R
Sbjct: 541 NVEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVV------LSLPR 594

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W  L+++V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+  
Sbjct: 595 A----WARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELL 650

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMW 855
             N  L+  L++    + + +  ++  D    ++     DL   H      TAFE D   
Sbjct: 651 RPNLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQER 710

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLD-------FIYRQAWLMGLKT-TYYLRSRS 907
           LI+  + R  ++DQ+QS++L++ EP   K+         +Y  A+  GLKT  YY + R 
Sbjct: 711 LIDLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVY--AYKKGLKTGLYYCKIRK 768

Query: 908 ATS 910
           AT+
Sbjct: 769 ATN 771


>gi|55978392|ref|YP_145448.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB8]
 gi|55773565|dbj|BAD72005.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermus
           thermophilus HB8]
          Length = 559

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 172/586 (29%), Positives = 256/586 (43%), Gaps = 103/586 (17%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           T+ E    +F   ++   +  +TP   N G R     SC+ T V DD   I  A+ E  M
Sbjct: 48  TKVEGFGRKFLEYMARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGM 107

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K  GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL
Sbjct: 108 MSKQGGGTSLYLGRLRPRGAPIR-DNGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYL 166

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+EE+L ++        R H                 Q+  W +   D   +   
Sbjct: 167 DVEHPDLEEWLSIQ--------REHS--------------PVQSLFWGVSVGDRWLE--- 201

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                        E  A  GE +        A W K+L    E G P++ F+D  N ++P
Sbjct: 202 -------------EMIAGDGEKR--------ARWAKILKSRAEVGIPYLFFRDNANQKAP 240

Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +  + +G  + +SNLCTEI L SS EE+ VC L S+NLL       ++  K    + T V
Sbjct: 241 EVFRALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLV 294

Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             LD+V+D           +E+A +    +RAIGLG++G+ S L    IP  SPEA    
Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRN 354

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            E  + I         E A+E         S W +   P D +  + E+++         
Sbjct: 355 AEIFKTIR--------ERAEE--------ASRWLRKRHPEDELAGVGELKER-------- 390

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802
                          RN+  +AIAPT + A I G VS SI+P   N Y+K          
Sbjct: 391 ---------------RNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFK 435

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N FL   L+++   +E +   +  H+GS+ +++ + D+ K +  T  EI  M L+  A+ 
Sbjct: 436 NPFLEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAAS 495

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           RQK IDQ QSLNL +  E   + ++ +   AW  GLK  YY  S+S
Sbjct: 496 RQKHIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQS 541


>gi|27467431|ref|NP_764068.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866331|ref|YP_187990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis RP62A]
 gi|282875688|ref|ZP_06284559.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|27314974|gb|AAO04110.1|AE016745_209 ribonuceloside diphosphate reductase major subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636989|gb|AAW53777.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|281295715|gb|EFA88238.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|329723344|gb|EGG59874.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU144]
 gi|329737947|gb|EGG74171.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571
            + ++  + Y+       I   +K +     R+ML M+ +T    G+P++ FKD  N   
Sbjct: 316 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
              ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  
Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMESG 424

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S E
Sbjct: 425 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A + A+     +++++I  S+E+A+ERG  Y  F+ S +  G +             E  
Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540

Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +  +L           W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P   
Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V+++++R   +      + +          +  +    + +
Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AF  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689

Query: 907 SATSVEKST 915
              SVE+ T
Sbjct: 690 -LLSVEECT 697


>gi|332672469|ref|YP_004421713.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
 gi|327493646|gb|AEA86505.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
          Length = 457

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 9/308 (2%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           RD+ F+ Y  + + Y +Y L+   + ++E PQ  +MRVAM + + E  + ++    Y+L+
Sbjct: 145 RDYLFQNYKAISMFYTKYCLNRTKTIKLETPQITYMRVAMFICINENNRVEKIKRIYDLI 204

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+  F  +TP + NSG    QLSSC L  + DD + I       A+ +K  GG   D + 
Sbjct: 205 STHKFTYATPIMLNSGINKGQLSSCVLAKMGDDSHSILATNDNLAIYSKNKGGTACDISA 264

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ I G  G S G IPF+K+ + T  A NQG  RKG+ C Y  TWH+DV+  + L+
Sbjct: 265 LRATGSIIDGV-GVSSGPIPFIKLLDSTISAWNQGSTRKGSCCVYYPTWHMDVQNLIMLK 323

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            N G +  R  ++  A  I D+F+KR   N  +TLF P +   L D +G +FE  Y  YE
Sbjct: 324 DNGGTESTRARNLQYAIKIDDVFVKRWYNNENYTLFDPKDTQKLLDSFGDDFEKYYLEYE 383

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++++  +    + I+A  L+ ++L    ETG+ +I F D  N +        V  SNLC 
Sbjct: 384 QKSNIRK----KSINARELFDEILKYRVETGNIYIFFTDNVNKQGMLNR--TVTQSNLCC 437

Query: 587 EITLNSSS 594
           EI L +S+
Sbjct: 438 EIVLPTSA 445


>gi|126725814|ref|ZP_01741656.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
 gi|126705018|gb|EBA04109.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
          Length = 757

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 164/601 (27%), Positives = 258/601 (42%), Gaps = 92/601 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E + +    +FYN L  F F+ +      +GT R   L +CF + T+PD +
Sbjct: 37  RIANDLASVEKDPKAWEGKFYNALEDFKFLPAGRITAGAGTGRAVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAVVKGVAADASGPLSFMDVWDSMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +K    D  R    N +  I D FM+ V  + GW 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFITAKK----DAARLRMFNVSVLITDPFMEAVKADKGWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L           ++G                   KV+R + A  LW  ++   +E   P 
Sbjct: 213 L-----------VFGG------------------KVYRTVQARDLWDSIMESTYEFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +   + ++N C E  L         C LGSINL    A+      Q
Sbjct: 244 VIFIDRINKMNNLNYCESIAATNPCGEQPL----PPYGACLLGSINLARLVADPFGKAAQ 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   LA  + TAVR++DNV+D +   +E   +     R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDEPALADLVTTAVRMMDNVVDASKFPLEAQAREAAAKRRIGLGVTGLADALLMVGVRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL----AE 731
           S EA  +++  ++ I+  A  AS  LA E+GA+  F+         P  + G L     +
Sbjct: 360 SEEAARLSERWLKAIARAAYLASAHLAGEKGAFPLFEAE-------PFLASGSLEDMDQD 412

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790
           V+D +A N                 G+RN+   +IAPT TI+   G VS  I+P +   Y
Sbjct: 413 VKDAIAEN-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +  D +     +V+   +  +W +      K+ D        +PD        A  
Sbjct: 456 TRKVLQKDGSRTEEEVVDYSVK--MWRD------KFGDA------ELPDYFVNAQTLA-- 499

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             P+  +   S  QKWID + S  +   E  S      +Y  AW  G K     R  + T
Sbjct: 500 --PLDHVRMQSAAQKWIDSSISKTINCPEDISFDDFKEVYMAAWDQGCKGCTTYRPNAVT 557

Query: 910 S 910
            
Sbjct: 558 G 558


>gi|282918524|ref|ZP_06326261.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282317658|gb|EFB48030.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
          Length = 718

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 160/604 (26%), Positives = 275/604 (45%), Gaps = 69/604 (11%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G     +         E   
Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKAR 562

Query: 735 EL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           EL   M   +   W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P        
Sbjct: 563 ELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP-------- 614

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        +V+++++R   +      + +          +       + +AF  D
Sbjct: 615 -------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSAFNTD 651

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SV
Sbjct: 652 QMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK-LLSV 710

Query: 912 EKST 915
           E+ T
Sbjct: 711 EECT 714


>gi|307704818|ref|ZP_07641713.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
 gi|307621647|gb|EFO00689.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
          Length = 719

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 175/657 (26%), Positives = 292/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  EQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E   +     CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEYLQMGTDISCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S + +G +    I G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 ADDWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|302340448|ref|YP_003805654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637633|gb|ADK83060.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
          Length = 826

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 232/490 (47%), Gaps = 41/490 (8%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLF 359
           +R   H++      P     RVA G+A++ET KEKR      F  LL  + F+     L 
Sbjct: 71  ERSLEHVDKPLETTPAQMIKRVASGIAMEET-KEKREEWTERFRWLLEDWRFVPGGRILT 129

Query: 360 NSGT-RHPQLSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            +GT ++    +C++   P+D  G I   L     +    GG+G + T +R   A++ G 
Sbjct: 130 GAGTDQNLTYYNCYVIPSPEDSRGGIIKTLGHMTEIMSRGGGVGINLTSLRPHHAYVKGV 189

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+S G + +  + +     + QGG R+GA+   L  WH D+ EF+  ++  G    +  
Sbjct: 190 NGRSSGSVSWGALYSFVTGLIEQGGSRRGALMLILNVWHPDILEFISSKRQMG----QIT 245

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           + N +  I D FMK V ++  W L  PD     +  Y KE++  +  +  +A    + V+
Sbjct: 246 NANISVGITDDFMKAVKEDLDWELVFPDTN---YPGYDKEWDGDFVAW--KAAGKPVNVY 300

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           RK+ A  +W  ++   + +  P I F D  N  S   +   +  +N C E  L S     
Sbjct: 301 RKVKAREIWNSIIESAWASAEPGIFFVDRYNAMSNSGYYARIQCTNPCGEQGLPS----W 356

Query: 598 AVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            VCNLG++N L+ FAN N  D+D L  T+R AVR LD+VID   +  E  K+   + R +
Sbjct: 357 GVCNLGAVN-LSRFANGNDVDWDNLGRTVRYAVRFLDDVIDNTPYFFEANKEQQLSERRV 415

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG MG    +  L I Y S E+    D+   FI+  A  +S + A+E+G++  F+   +
Sbjct: 416 GLGTMGLAELMIKLKIRYGSKESEAFLDKLYRFIAVEAYRSSSDTAKEKGSFPKFEAEPF 475

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +  F     G+  E+R ++A N                 G+RN   +  APT T   + 
Sbjct: 476 LESGF---MKGMPEEIRRKIAEN-----------------GIRNVTLLTQAPTGTTGTMV 515

Query: 777 GVSQSIDPSY 786
           G S  I+P Y
Sbjct: 516 GTSTGIEPYY 525


>gi|251810164|ref|ZP_04824637.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|293368192|ref|ZP_06614821.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|251806216|gb|EES58873.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|291317615|gb|EFE58032.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 698

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571
            + ++  + Y+       I   +K +     R+ML M+ +T    G+P++ FKD  N   
Sbjct: 313 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 366

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
              ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  
Sbjct: 367 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMESG 421

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S E
Sbjct: 422 KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 481

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A + A+     +++++I  S+E+A+ERG  Y  F+ S +  G +             E  
Sbjct: 482 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 537

Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +  +L           W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P   
Sbjct: 538 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 594

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V+++++R   +      + +          +  +    + +
Sbjct: 595 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 626

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AF  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 627 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686

Query: 907 SATSVEKST 915
              SVE+ T
Sbjct: 687 -LLSVEECT 694


>gi|149201158|ref|ZP_01878133.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
 gi|149145491|gb|EDM33517.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
          Length = 762

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 164/620 (26%), Positives = 262/620 (42%), Gaps = 88/620 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA+ E E       FY+ L  F F+ +      +GT R   L +CF + TVPDD+
Sbjct: 39  RIARALAVAEAEPALWEERFYHALEDFKFLPAGRITAGAGTARKVTLFNCFVMGTVPDDM 98

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V +     +  
Sbjct: 99  GGIFDGLREAALTMQQGGGIGYDFSTIRPKGAEVKGVSADASGPLSFMDVWDAMCRTIMS 158

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+  +     D  R    N +  I D FM+ V  +  W 
Sbjct: 159 AGSRRGAMMATMRCDHPDIEAFIAAKS----DPARLRMFNLSVLITDAFMEAVKADGPWD 214

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+  + A  LW +++   ++   P 
Sbjct: 215 L-----------QFGG------------------KVYHTVQARDLWNRIMQATYDYAEPG 245

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-----AHFANNQ 615
           + F D  N  +   +   + ++N C E  L         C LGSINL         A  +
Sbjct: 246 VIFIDRINAANNLAYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAEPFAAGAR 301

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   +R AVR++DNV+D++   +          R IGLG+ G   AL ++ + Y 
Sbjct: 302 VDEAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQAKRRIGLGVTGLADALLMVGLRYG 361

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  AV+  +  +  I+  A  ASV+LA+E+GA+  F                     RD 
Sbjct: 362 SDAAVQQTEAWLHAIARAAYLASVDLAREKGAFPLFD--------------------RDA 401

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
              + T +    +++  V   G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 402 YLASGTMQTMDADVRAAVAEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYSYTRKV 461

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +++   Q  +W + M  D    +  +      P+D  K+ A A      
Sbjct: 462 LQKDGSRTEEEVIDYAVQ--MWRDRM-GDAPLPEHFVNAQTLPPEDHVKMQAAA------ 512

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT---- 909
                    QKW+D + S  +   E  S +    +Y QAW +G K     R  + T    
Sbjct: 513 ---------QKWVDSSISKTINCPEDISFEAFKNVYLQAWDLGCKGCTTYRPNAVTGSVL 563

Query: 910 SVEKSTLKGVDGKLNAVPVT 929
           SV ++T K        VP T
Sbjct: 564 SVSETTDKAPGETRGDVPAT 583


>gi|190149419|ref|YP_001967944.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249852|ref|ZP_07336056.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244960|ref|ZP_07527057.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251677|ref|ZP_07533582.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253913|ref|ZP_07535765.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258367|ref|ZP_07540108.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262737|ref|ZP_07544364.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914550|gb|ACE60802.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651419|gb|EFL81571.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854125|gb|EFM86333.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306860874|gb|EFM92882.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863117|gb|EFM95059.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867551|gb|EFM99398.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871882|gb|EFN03599.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 554

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 164/588 (27%), Positives = 259/588 (44%), Gaps = 108/588 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIR-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      VH+SNLCTEI L SSS+E+ VC L S+NLL       FD  K           
Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 295

Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           LD V+        +   +E+A +    HRA+GLG++G+ S L   +I + S +A++  + 
Sbjct: 296 LDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNL 355

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + +    + AS ELA+  G     KG                                
Sbjct: 356 IFKTLQEKTLKASQELAKRFGEPELLKG-------------------------------- 383

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G RN+  M+IAPT + + I G VS S++P   N YVK          N 
Sbjct: 384 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 433

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL   L+++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQ
Sbjct: 434 FLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQ 493

Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           K+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 494 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|50365345|ref|YP_053770.1| ribonucleotide-diphosphate reductase subunit alpha [Mesoplasma
           florum L1]
 gi|50363901|gb|AAT75886.1| ribonucleoside-diphosphate reductase alpha chain [Mesoplasma florum
           L1]
          Length = 721

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 165/596 (27%), Positives = 267/596 (44%), Gaps = 89/596 (14%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T +R 
Sbjct: 158 FQPATPTFLNAGKKQRGEYVSCYLLRVEDNMESICRAVTTSLQLSKRGGGVALCLTNLRE 217

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     ++ GVIP +K+  D+    NQ G+R+GA   YL   H DV  FLD ++  
Sbjct: 218 LGAPIKQIANQATGVIPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDVMSFLDTKREN 277

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526
            D++ R   ++    IPD+  +   +N    LFSP    D+   YGK   +  I  E Y+
Sbjct: 278 ADEKIRIKSLSLGLVIPDITFELAQKNEEMALFSP---YDVEREYGKAMSDISITQE-YQ 333

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  IK    I+A   +  +  + FE+G+P+I F D  N  +     G +  SNLC+
Sbjct: 334 NLVKNPNIKK-TYINARKFFLTVAELHFESGYPYILFDDTVNNNNAHAATGRIVMSNLCS 392

Query: 587 EI-------TLN-----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI       T N      S  +   CNLGS+N+     +      + A  I  ++  LD 
Sbjct: 393 EIAQVSTPSTFNDDLSFKSMGDDICCNLGSLNIAKVMESGA----EFAEVIEHSINALDL 448

Query: 635 VIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V       +  +I++  K NH   A+GLG M     L    I Y S EAV+  +     +
Sbjct: 449 VSRTSDLSSAPSIQQGNKKNH---AVGLGAMNLHGFLATNFIWYNSIEAVDFTNMFFYAM 505

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---------VRDELAMNRT 741
           +++A  AS +LA + G +  F+ S +  G +  +     AE         VR+  A    
Sbjct: 506 AYNAFKASHKLALQYGTFDGFETSQFADGSW-FNKYTKCAEDKWTPETQRVRELFAQYNV 564

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           + +P    W EL + +K  G+ NS+ MA+APT +I+ +   + S+ P    + V+     
Sbjct: 565 T-IPTQKDWIELVELIKKDGIANSHLMAVAPTGSISYLSSCTPSLQPVVAPIEVRK---- 619

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHATAFEI 851
                                         +G +G I  +P      D++      A+E+
Sbjct: 620 ------------------------------EGKLGRI-YVPAYNINFDNMAYYALGAYEV 648

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            PM +I+  +  Q+ +DQA SL L++ D+ + + L+  Y  A+     + YY+R R
Sbjct: 649 GPMPIIDIVAAAQQHVDQAISLTLFMTDQVTTRDLNKAYIHAFKKKCASIYYVRVR 704


>gi|315173868|gb|EFU17885.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1346]
          Length = 719

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMKYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|315149361|gb|EFT93377.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0012]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQIQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|116333245|ref|YP_794772.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis ATCC 367]
 gi|116098592|gb|ABJ63741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus brevis ATCC 367]
          Length = 721

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 178/691 (25%), Positives = 300/691 (43%), Gaps = 96/691 (13%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMP 317
           YIEE V       +   F  +    D    +DF F+ ++     Y +Y L  + +   + 
Sbjct: 65  YIEEAVV------TAYPFSFIEDLYDYLKAQDFHFKSFMAAYKFYAQYALKTDDNEFYL- 117

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTV 376
           + F  RVAM         ++ A +  + +    +  +TP+  N+G +R  +L SCFL   
Sbjct: 118 ENFIDRVAMNALDFGGGDQRLAHDLADEIIHQRYQPATPSFLNAGRSRRGELVSCFLIQS 177

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DD+  I   +     L++  GG+G   + +RG G  I    G + GV+P +K+  D+  
Sbjct: 178 TDDMNTIGRTINSALQLSRIGGGVGISLSNLRGAGDPIKHIEGAASGVVPVMKLLEDSFS 237

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD F +    +
Sbjct: 238 YSNQLGQRQGAGVVYLSVFHPDIVAFLSAKKENADEKIRLKTLSLGITVPDKFYELCAAD 297

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA-----YENYERQADRGEIKVFRKISAVALWRKMLT 551
           A   LFSP    D+  +YGK F        Y+N     D  +    +K+ A  L   +  
Sbjct: 298 ADMYLFSP---YDVERIYGKPFSYVDITAEYDNLVANPDIHK----KKMKARDLETDIGK 350

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV----- 599
           +  E+G+P+I   D  N  +P    G +  SNLC+EI       T+N+  E   +     
Sbjct: 351 LQQESGYPYIVNIDTANRENPID--GRIVMSNLCSEIMQVQTPSTVNNKQEYVKLGTDIS 408

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658
           CNLGS N++   ++  F +     ++ T VR L  V D  +   +   +K N     IGL
Sbjct: 409 CNLGSTNIVNLMSSPDFGH-----SVETMVRALTYVTDHSDIDVVPSIQKGNQLGHTIGL 463

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G MG  S     H+ Y S +++         +++  + AS E+A+ER   + +F  S + 
Sbjct: 464 GAMGLHSYFAKNHMMYGSKDSIAFTSVYFMLLNYWTLKASNEIAKERHETFHNFDKSAYA 523

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP--WDELKKRVKTIGMRNSNCMAIAPTA 770
            G +       D     A+V+ EL  N     P  W ELK  V   G+ + N MA+AP  
Sbjct: 524 DGRYFDRYTETDWRPTSAKVQ-ELFANVWLPAPEDWAELKTAVMQDGLYHQNRMAVAPNG 582

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + S+ P                     ++N +++R    E  I  + Y    
Sbjct: 583 SISYINDTTASLHP---------------------IINRIEER---QEKKIGKIYYPAPY 618

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877
           + N      D    + +A++ D   +I+  +  QK +DQ  SL L++             
Sbjct: 619 LSN------DTMPYYKSAYDTDMRRVIDVYAAAQKHVDQGMSLTLFMRSTIPVGLYEWKD 672

Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 673 GRTDKMTTRDLSILRNYAFRKGIKSLYYVRT 703


>gi|325969910|ref|YP_004246101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
 gi|324025148|gb|ADY11907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
          Length = 836

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 157/601 (26%), Positives = 266/601 (44%), Gaps = 71/601 (11%)

Query: 317 PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           P     RVA G+A  E +  + +   EF  LL  + F+     L  +GT ++    +C++
Sbjct: 86  PAQMLARVAKGIASIEKQEVRTQWETEFNWLLEDWKFVPGGRILTGAGTDQNLTYFNCYV 145

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P D   GI  +L +   +    GG+G + + +R   +++ G NG+S G + +  + +
Sbjct: 146 IPSPKDSRGGIIASLGQMTEIMSRGGGVGMNISSLRPRHSYVKGVNGRSSGSVSWGGLFS 205

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                + QGG R+GA+   L  WH D+ +F++ ++  G    +  + N +  I D FM+ 
Sbjct: 206 FVTGLIEQGGSRRGALMLILNVWHPDIIDFINSKREMG----KITNANISVGITDDFMEA 261

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++A W  + PD        Y  E++     +  +A+  ++ V++   A  +W  ++  
Sbjct: 262 VRKDANWDTYFPDTT---DPAYNTEWDGDINKW--KANGHKVVVYQTQKAKKIWDAIVES 316

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            + +  P + F D  N  S   +   + S+N C E  L        VCNLGSINL     
Sbjct: 317 AWASAEPGVFFIDRYNKMSNSWYYSTIQSTNPCGEQGL----PPWGVCNLGSINLSRFVE 372

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N +  Y  L   +R AVR LDNVID   +  E+ KK   + R IGLG MG    L  + +
Sbjct: 373 NKKVLYKDLGRAVRAAVRFLDNVIDDTPYFFEENKKQQLSERRIGLGTMGLADMLIKMEL 432

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S E++   +E  +FI   + S S +LA+E+G++  F      Q  F           
Sbjct: 433 PYGSEESLTFIEELYKFICIESYSESSDLAKEKGSFPFFDAEKLLQSGF----------- 481

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                     ++P +E+  +V+  G+RN   +  APT T   +   S  I+P Y   + +
Sbjct: 482 --------MKQMP-EEICTKVRKQGLRNVTLLTQAPTGTTGTMVNTSTGIEPYYFWEWER 532

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           +   G         +  +K  D W       +K H G     ++ P        +A ++ 
Sbjct: 533 TGRMGSN-------IERVKVYDDW-------VKAHPG-----QKKP----AYFVSAMDLA 569

Query: 853 PMWLIESASRRQKWIDQA-----QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRS 905
           P   ++  +  QKW+D +      +   Y  E +GK  + +Y     +G K  TTY   S
Sbjct: 570 PEGHVKVQAAIQKWVDSSISKTGNTPKEYTIEQTGKLYELLYD----LGCKGGTTYRDGS 625

Query: 906 R 906
           R
Sbjct: 626 R 626


>gi|257080867|ref|ZP_05575228.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256988897|gb|EEU76199.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPSIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIARERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|300861975|ref|ZP_07108055.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300848500|gb|EFK76257.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|323479609|gb|ADX79048.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis 62]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSNYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|29375102|ref|NP_814255.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis V583]
 gi|227519133|ref|ZP_03949182.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227553837|ref|ZP_03983886.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229548396|ref|ZP_04437121.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255971024|ref|ZP_05421610.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256617389|ref|ZP_05474235.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256957627|ref|ZP_05561798.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959664|ref|ZP_05563835.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|257080135|ref|ZP_05574496.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257083551|ref|ZP_05577912.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085824|ref|ZP_05580185.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088967|ref|ZP_05583328.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257418243|ref|ZP_05595237.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420750|ref|ZP_05597740.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|293384856|ref|ZP_06630699.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|293389146|ref|ZP_06633613.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294780705|ref|ZP_06746066.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|307268567|ref|ZP_07549939.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|307275555|ref|ZP_07556696.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|307288832|ref|ZP_07568810.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|307290615|ref|ZP_07570523.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|312904831|ref|ZP_07763971.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|312908154|ref|ZP_07767132.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312979090|ref|ZP_07790805.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342561|gb|AAO80326.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Enterococcus
           faecalis V583]
 gi|227073410|gb|EEI11373.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227177090|gb|EEI58062.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229306612|gb|EEN72608.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255962042|gb|EET94518.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256596916|gb|EEU16092.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256948123|gb|EEU64755.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950160|gb|EEU66792.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256988165|gb|EEU75467.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256991581|gb|EEU78883.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993854|gb|EEU81156.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997779|gb|EEU84299.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257160071|gb|EEU90031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162574|gb|EEU92534.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|291077860|gb|EFE15224.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|291081517|gb|EFE18480.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294452315|gb|EFG20756.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|306498329|gb|EFM67838.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|306500301|gb|EFM69640.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|306507660|gb|EFM76789.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|306515056|gb|EFM83599.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|310625862|gb|EFQ09145.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310631837|gb|EFQ15120.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|311288124|gb|EFQ66680.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315026266|gb|EFT38198.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2137]
 gi|315032245|gb|EFT44177.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0017]
 gi|315035531|gb|EFT47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0027]
 gi|315143981|gb|EFT87997.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2141]
 gi|315146929|gb|EFT90945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4244]
 gi|315155003|gb|EFT99019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0043]
 gi|315158780|gb|EFU02797.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0312]
 gi|315161037|gb|EFU05054.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0645]
 gi|315166221|gb|EFU10238.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1302]
 gi|315170810|gb|EFU14827.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1342]
 gi|315574920|gb|EFU87111.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309B]
 gi|315576499|gb|EFU88690.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0630]
 gi|315582367|gb|EFU94558.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309A]
 gi|327534209|gb|AEA93043.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis OG1RF]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|215428499|ref|ZP_03426418.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 701

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 284/646 (43%), Gaps = 81/646 (12%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 583

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 584 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 620

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 621 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWAQG 666


>gi|289751723|ref|ZP_06511101.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
 gi|289692310|gb|EFD59739.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 733

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 284/646 (43%), Gaps = 81/646 (12%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P           
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP----------- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLKKIHATAFEI 851
                     +V++++ R              +G IG +      + +D  + +  A+EI
Sbjct: 616 ----------IVSKVEIR-------------KEGKIGRVYYPAPYMTNDNLEYYEDAYEI 652

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 653 GYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWAQG 698


>gi|146301801|ref|YP_001196392.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacterium
           johnsoniae UW101]
 gi|146156219|gb|ABQ07073.1| ribonucleoside-diphosphate reductase, alpha chain [Flavobacterium
           johnsoniae UW101]
          Length = 565

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/579 (28%), Positives = 252/579 (43%), Gaps = 106/579 (18%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  ++       S+P   N GT      SCF   VPD + GI   L E  M  K  GG  
Sbjct: 67  FVEMIERGWMSISSPVWANMGTERGLPISCFNVHVPDKIEGITHKLGEVIMQTKIGGGTS 126

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EE
Sbjct: 127 GYFGELRERGSAVT-DNGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIEE 185

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL + K+ G+      ++ T   +PD +M+                              
Sbjct: 186 FLKI-KSIGNP---IQNLFTGICVPDYWMQ------------------------------ 211

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
            E  +  AD+ +I           W K+L    + G P+I F D  N   PQ +      
Sbjct: 212 -EMIDGDADKRQI-----------WAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNLR 259

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +++SNLC+EI L S+ +E+ +C L S+NL        ++  K    ++ A+  LD V+  
Sbjct: 260 INASNLCSEIMLPSTHDESFICCLSSMNL------ELYEEWKDTEAVKLAIFFLDAVLQE 313

Query: 639 NCHTIE------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                E       A K    HRA+GLG++G+ S L    IP+   EA     E  + IS 
Sbjct: 314 FIEKTEGNYYLSAANKFAKRHRALGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISD 373

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS ELA+  G     KG                                       
Sbjct: 374 KADKASQELARIYGEPELLKG--------------------------------------- 394

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L+
Sbjct: 395 ---YGRRNTTTMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLE 451

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L +E +   +  + GS+ ++ ++    K +  T  EI  + +++ A  RQK++DQ Q
Sbjct: 452 EKGLDNEEVWRGIMLNGGSVQHMSQLTQQEKDVFKTFKEISQLEIVQQAGIRQKFVDQGQ 511

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           SLNL +  E + K ++ +  +AW  G+K+ YY RS+S +
Sbjct: 512 SLNLNIPAELAIKDVNRLMIEAWQQGVKSLYYQRSQSVS 550


>gi|307249356|ref|ZP_07531350.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858650|gb|EFM90712.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 554

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 164/592 (27%), Positives = 261/592 (44%), Gaps = 116/592 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      VH+SNLCTEI L SSS+E+ VC L S+NLL         +D+   T   A  V
Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLY--------FDEWKDT--DAPEV 291

Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           L   +D+          +   +E+A +    HRA+GLG++G+ S L   +I + S +A++
Sbjct: 292 LTYFLDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQ 351

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                 + +    + AS ELA+  G     KG                            
Sbjct: 352 KNSLIFKTLQEKTLKASQELAKRFGEPEILKG---------------------------- 383

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800
                          G RN+  M+IAPT + + I G VS S++P   N YVK        
Sbjct: 384 --------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTV 429

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N FL   L+++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A
Sbjct: 430 YKNPFLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQA 489

Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++RQK+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 490 AQRQKYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|227431270|ref|ZP_03913324.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353032|gb|EEJ43204.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 723

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 162/642 (25%), Positives = 282/642 (43%), Gaps = 77/642 (11%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y++Y L  N     + + +  RVAM         E  A+   + +    +  +TP+  N
Sbjct: 104 FYNQYALKTNDGAYYI-ETYEDRVAMNALYYADGNENLALRLADEMIHQRYQPATPSFLN 162

Query: 361 SG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR  GA + G + 
Sbjct: 163 AGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNVREAGAPVMGIDN 222

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K   D++ R   +
Sbjct: 223 AAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKKENADEKIRVKTL 282

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    +PD F   V QN    LFSPD+V  ++       +I  E Y+      +I+  ++
Sbjct: 283 SLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YDNMVANDKIRK-QR 340

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-- 597
           I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+EI    +  E   
Sbjct: 341 IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSEILQVQTPSEIDN 398

Query: 598 ----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKA 646
                       CNLGSIN++     N F       ++ T VR L  V D  N   +   
Sbjct: 399 EQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTFVSDSSNLDVVPSI 453

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
              N    AIGLG MG  +      + Y   E+++        +++++I +S+ +A+ER 
Sbjct: 454 DLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTSTFFMMLNYYSIKSSMGIAKERH 513

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759
             +  F  S +  G +    +      + E         +  +   W +LK+ V   GM 
Sbjct: 514 ETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDWAQLKEDVAKYGMY 573

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+   AIAPT +I+ +   + S+ P                     +VN++++R    E 
Sbjct: 574 NAYRHAIAPTGSISYVNDATASLLP---------------------IVNKIEER---QEG 609

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877
           MI  + Y    + N E +P      + +A++ D   +I+  +  Q+ IDQ  +L L++  
Sbjct: 610 MIGKVYYPAPGLSN-ETMP-----YYVSAYDTDMRRVIDVYAAAQEHIDQGMALTLFMRS 663

Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                         ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 664 TLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705


>gi|53728875|ref|ZP_00348265.1| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207636|ref|YP_001052861.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|165975604|ref|YP_001651197.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251972|ref|ZP_07338143.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247134|ref|ZP_07529186.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256173|ref|ZP_07537960.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260606|ref|ZP_07542298.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126096428|gb|ABN73256.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875705|gb|ABY68753.1| ribonucleoside-diphosphate reductase alpha subunit 1
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|302649402|gb|EFL79587.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856383|gb|EFM88534.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865354|gb|EFM97250.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869683|gb|EFN01468.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 554

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 164/588 (27%), Positives = 259/588 (44%), Gaps = 108/588 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSVIR-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      VH+SNLCTEI L SSS+E+ VC L S+NLL       FD  K           
Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 295

Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           LD V+        +   +E+A +    HRA+GLG++G+ S L   +I + S +A++  + 
Sbjct: 296 LDVVMSEFIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNL 355

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + +    + AS ELA+  G     KG                                
Sbjct: 356 IFKTLQEKTLKASQELAKRFGEPELLKG-------------------------------- 383

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G RN+  M+IAPT + + I G VS S++P   N YVK          N 
Sbjct: 384 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 433

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL   L+++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQ
Sbjct: 434 FLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQ 493

Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           K+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 494 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|256963239|ref|ZP_05567410.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|307272282|ref|ZP_07553542.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|312952107|ref|ZP_07770988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|256953735|gb|EEU70367.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|306511171|gb|EFM80181.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|310629889|gb|EFQ13172.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|315153941|gb|EFT97957.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0031]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKNGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|110681184|ref|YP_684191.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
 gi|109457300|gb|ABG33505.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
          Length = 832

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 160/598 (26%), Positives = 256/598 (42%), Gaps = 86/598 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E   E    +FY  L  F ++ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARDLARVEKTPEVWEEKFYAALEDFKYLPAGRITAGAGTARSVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMEAVKADGPWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                               + KV+R + A  LW +++   ++   P 
Sbjct: 213 LVF-----------------------------DGKVYRTVQARDLWNRIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGSIN LA   +N F    
Sbjct: 244 VIFIDRINQANNLSYCETIAATNPCGEQPL----PPYGACLLGSIN-LARLVSNPFEDTA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D   L   + TAVR++DNV+D +   +E   +     R IGLG+ G   AL ++ + Y
Sbjct: 299 ALDEAALDDLVATAVRMMDNVVDASKFPLEAQAREAQAKRRIGLGVTGLADALLMMGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA    D  +  I+  A  ASV+LA+E+GA+  F                      D
Sbjct: 359 GSDEAARQTDRWLHSIARAAYLASVDLAREKGAFPLFDA--------------------D 398

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
           +   + T +   ++++  V+  G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 399 KYLASGTMQAMDEDVRDAVREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   Q  LW E      K+ D      + +PD        A  + P
Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--LWRE------KFGD------KELPD----YFVNAQTLAP 500

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  ++  +  QKW+D + S  +   E  G      +Y +AW  G K     R  + T 
Sbjct: 501 LEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYMEAWDSGCKGCTTYRPNAVTG 558


>gi|229547641|ref|ZP_04436366.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255973537|ref|ZP_05424123.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256761392|ref|ZP_05501972.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852444|ref|ZP_05557820.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|307282793|ref|ZP_07562993.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|312900213|ref|ZP_07759525.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|229307133|gb|EEN73120.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255966409|gb|EET97031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256682643|gb|EEU22338.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712298|gb|EEU27330.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|306503649|gb|EFM72880.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|311292574|gb|EFQ71130.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|315028519|gb|EFT40451.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4000]
 gi|315167730|gb|EFU11747.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1341]
          Length = 719

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 176/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   E+ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIKKYSMDFIEKLYAFLD---EQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|260202189|ref|ZP_05769680.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T46]
          Length = 694

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583


>gi|254467219|ref|ZP_05080630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
 gi|206688127|gb|EDZ48609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
          Length = 765

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 162/610 (26%), Positives = 267/610 (43%), Gaps = 90/610 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I++  +  + R+A  LA  E + +    +FY  L  F ++ +      +GT 
Sbjct: 19  FKQADGAPIDVTVEDTWRRIARDLARAEKKPDAWEEKFYAALEDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RQVTLFNCFVMGTIPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEHFITAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W                   E+ ++           KV+  + A
Sbjct: 195 VLVTDDFMEAVKADGSW-------------------ELQFDG----------KVYHTVEA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F D  N  +   ++  + ++N C E  L         C L
Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSIN+ A    N F+ D       +   + TAVR++DNV+D++   ++   +     R I
Sbjct: 282 GSINM-ARLVANPFEKDAHLDQAAMQELVATAVRMMDNVVDVSKFPLDAQAEEAKNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMLGLEYGSDEAARQTDEWLHAIARAAYLASVELAKEKGAFPLFDA--- 397

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775
                             E  +N  + L  DE ++  ++  G+RN+   +IAPT TI+  
Sbjct: 398 ------------------EKYLNSGNMLNMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439

Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G VS  I+P +   Y +  +  D +     +V+   Q  ++ E   +D K         
Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK--------- 488

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
             +PD        A  + P   ++  +  QKWID + S  +   E  S      +Y QAW
Sbjct: 489 --LPD----YFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQAW 542

Query: 894 LMGLK--TTY 901
             G K  TTY
Sbjct: 543 DQGCKGCTTY 552


>gi|314933043|ref|ZP_07840409.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
 gi|313654362|gb|EFS18118.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
          Length = 701

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 162/614 (26%), Positives = 276/614 (44%), Gaps = 64/614 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+ LA  +T   K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  
Sbjct: 126 VALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I         L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G
Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F
Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKERKDFYMF 302

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   + +   + ++  + Y+       I   +K  A  +   +     ++G+P++ 
Sbjct: 303 APHTVKQEYGVTLDDIDLE-KYYDDMVANPNIDK-KKKDAREMLNTIAQTQLQSGYPYLM 360

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAH 610
           FKD  N       +G +  SNLCTEI        +N    +  +     CNLGS+N++  
Sbjct: 361 FKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIV-- 418

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  +  K   ++ T +  L  V D  N       KK+N    ++GLG+M     L  
Sbjct: 419 ---NVMESGKFKDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723
             I Y S EA + A+     +++++I  S+E+A+ERG +Y  F  S +  G +       
Sbjct: 476 NKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSQ 535

Query: 724 DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +      +VR     ++  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+
Sbjct: 536 EFEPQFEKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSV 595

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P                     +V+++++R   +      + +          +  +  
Sbjct: 596 MP---------------------IVDQIERRTYGNAETFYPMPF----------LSPETM 624

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + +AF  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ Y
Sbjct: 625 WYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLY 684

Query: 902 YLRSRSATSVEKST 915
           Y R++   SVE+ T
Sbjct: 685 YTRNK-LLSVEECT 697


>gi|163738452|ref|ZP_02145867.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
 gi|161388373|gb|EDQ12727.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 765

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/610 (26%), Positives = 271/610 (44%), Gaps = 91/610 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I+   +  + R+A  LA  E++ +    +FY  L  F ++ +      +GT 
Sbjct: 19  FKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W                   E+ ++           KV++ + A
Sbjct: 195 VLVTDPFMEAVKADGSW-------------------ELIFDG----------KVYQTVQA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F D  N  +   +V  + ++N C E  L         C L
Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSINL A    N F      D + L   + TAVR++DNV+D++   ++   +     R I
Sbjct: 282 GSINL-ARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775
                  D+   LA           + +  DE ++  ++  G+RN+   +IAPT TI+  
Sbjct: 396 -------DADAYLAS---------GTMMDMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439

Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G VS  I+P +   Y +  +  D +     +V+   Q  +W +      K+ D      
Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------ 485

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
           + +PD        A  + P   ++  +  QKWID + S  +   E  S      +Y QAW
Sbjct: 486 KELPD----YFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQAW 541

Query: 894 LMGLK--TTY 901
            +G K  TTY
Sbjct: 542 DLGCKGCTTY 551


>gi|71906603|ref|YP_284190.1| ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
 gi|71846224|gb|AAZ45720.1| Ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
          Length = 964

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 172/603 (28%), Positives = 268/603 (44%), Gaps = 75/603 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
           RVA  LA  E E ++   E   L +  + F+ +      +GT     L +CF+  V D +
Sbjct: 50  RVAYALAQVEQEADRAHWENKFLWAQENGFIPAGRINSAAGTDLQATLINCFVQPVGDSI 109

Query: 381 Y-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
                   GI+ AL + A   +  GG+G D++ +R  GA + GT  ++ G + +++V + 
Sbjct: 110 VENTEGKPGIYTALAQAAETMRRGGGVGYDFSSIRPQGARVKGTQSRASGPVSYMRVFDR 169

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V   G R+GA    L   H D+EEF+   K+ GD      + N +  + D FM+ V
Sbjct: 170 SCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDKGD----LTNFNISIGVTDPFMEAV 224

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +         +V  LH         A   Y+R+     I V+RK+ A  LW +++   
Sbjct: 225 DADG--------DVELLHRAEPNADMRAAGAYQREDG---IWVYRKVRARDLWDQVMKST 273

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P I F D  N  +   +  V+ ++N C E  L         C LGSINL  +  +
Sbjct: 274 YDHAEPGILFLDRMNKDNNLNYCEVIEATNPCAEQPL----PPYGCCCLGSINLTLYVKD 329

Query: 614 N-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD+D  A  IR + R+LDNV+D     +E+ ++     R +GLG  G   AL 
Sbjct: 330 AFSEQAEFDFDAFAEVIRISTRMLDNVLDATHWPLERQQQEAANKRRVGLGYTGLGDALA 389

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y  PEA  +A    EF+   A   SVE+A+ERGA+  F   L+  G         
Sbjct: 390 MLRLRYDKPEARAMAARISEFMRDTAYMYSVEMAKERGAFPLFNAELYLSG--------- 440

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786
                     N  SRLP D +K  ++  G+RNS+ ++IAPT TI  A     S  I+P +
Sbjct: 441 ---------GNFASRLPTD-VKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPF 490

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y +     D T +  + V +   R          L  H G  G++ ++PD       
Sbjct: 491 SWTYNRKKRMQDGT-IKEYSVEDYAWR----------LYKHRG--GDVSKLPD----FFV 533

Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           TA EI      +  +    +ID   ++++N+  D P     D +Y  AW  GLK     R
Sbjct: 534 TALEISAQAHSDMVAAVAPFIDTSISKTVNVPADYPYTDFQD-LYMSAWKSGLKGLATYR 592

Query: 905 SRS 907
             S
Sbjct: 593 PNS 595


>gi|329736710|gb|EGG72975.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU028]
          Length = 701

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 160/609 (26%), Positives = 272/609 (44%), Gaps = 77/609 (12%)

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRS 571
            + ++  + Y+       I   +K +     R+ML M+ +T    G+P++ FKD  N   
Sbjct: 316 DDIDLE-KYYDDMVANPNIDKKKKDA-----REMLNMIAQTQLQSGYPYLMFKDNANKVH 369

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
              ++G +  SNLCTEI        +N    E  +     CNLGS+N++    + +F   
Sbjct: 370 ANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGEF--- 426

Query: 620 KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S E
Sbjct: 427 --RDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEE 484

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           A + A+     +++++I  S+E+A+ERG  Y  F+ S +  G +             E  
Sbjct: 485 AKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKY----FEFYTSQEFEPK 540

Query: 738 MNRTSRL----------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +  +L           W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P   
Sbjct: 541 FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP--- 597

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             +V+++++R   +      + +          +  +    + +
Sbjct: 598 ------------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AF  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 630 AFNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689

Query: 907 SATSVEKST 915
              SVE+ T
Sbjct: 690 -LLSVEECT 697


>gi|223042914|ref|ZP_03612962.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
 gi|222443768|gb|EEE49865.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
          Length = 701

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 162/614 (26%), Positives = 276/614 (44%), Gaps = 64/614 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+ LA  +T   K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  
Sbjct: 126 VALYLANGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I         L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G
Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F
Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMF 302

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   + +   + ++  + Y+       I   +K  A  +   +     ++G+P++ 
Sbjct: 303 APHTVKQEYGVTLDDIDLE-KYYDDMVANPNIDK-KKKDAREMLNTIAQTQLQSGYPYLM 360

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAH 610
           FKD  N       +G +  SNLCTEI        +N    +  +     CNLGS+N++  
Sbjct: 361 FKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIV-- 418

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  +  K   ++ T +  L  V D  N       KK+N    ++GLG+M     L  
Sbjct: 419 ---NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723
             I Y S EA + A+     +++++I  S+E+A+ERG +Y  F  S +  G +       
Sbjct: 476 NKIGYESEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSK 535

Query: 724 DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +      +VR     ++  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+
Sbjct: 536 EFEPQFEKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSV 595

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P                     +V+++++R   +      + +          +  +  
Sbjct: 596 MP---------------------IVDQIERRTYGNAETFYPMPF----------LSPETM 624

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + +AF  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ Y
Sbjct: 625 WYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLY 684

Query: 902 YLRSRSATSVEKST 915
           Y R++   SVE+ T
Sbjct: 685 YTRNK-LLSVEECT 697


>gi|317495972|ref|ZP_07954334.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
 gi|316913876|gb|EFV35360.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
          Length = 696

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 166/591 (28%), Positives = 269/591 (45%), Gaps = 75/591 (12%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G 
Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+
Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R   ++T   +P LF     +N  + +F P  + + + L   + +IA    E  A+  
Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKEFYMFGPHSIYEEYGLVLDDIDIAEYYDEFVANEN 327

Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            IK  RK  A    R ML ++ +T    G+P++ FKD  N     + +G V  SNLCTEI
Sbjct: 328 IIK--RKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381

Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 +ET+V               CNL S+N++     N  +  KL  +I + +  L 
Sbjct: 382 F---QLQETSVIKDYGESDVIKRDISCNLASLNIV-----NVMESKKLKESIYSGMDALT 433

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D           K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSDSTKIKNAPGVVKANEEFHSVGLGAMNLNGYLAKNLIAYDSEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLP 745
           + I  S+++A+ER   +  F+ S +  G +       D +    +V++    +   ++  
Sbjct: 494 YTIERSMQIAKERKETFKDFEKSDYYNGAYFTKYITNDYLPKSDKVKELFEGIYIPTKED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P                     
Sbjct: 554 WHSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP--------------------- 592

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +V+++++R   +      + Y          +    +  + +AF +D M LI+  +  Q+
Sbjct: 593 IVDKIERRSYGNAETFYPMPY----------LSPKTQWYYKSAFTMDQMKLIDLMAVIQE 642

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            IDQ  S+ LY++ + + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 HIDQGISVILYVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|325955615|ref|YP_004239275.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
 gi|323438233|gb|ADX68697.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
          Length = 562

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 159/579 (27%), Positives = 251/579 (43%), Gaps = 110/579 (18%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  ++       S+P   N GT      SCF   +PD + GI   L E  M  K  GG  
Sbjct: 64  FKEMIERGWMSLSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTS 123

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EE
Sbjct: 124 GYFGELRERGSAVT-DNGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIEE 182

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL + K+ G+      ++     +PD +M+ +                            
Sbjct: 183 FLKI-KSIGNP---IQNLFYGVCVPDYWMQEMIDG------------------------- 213

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
                             +    +W K+L    E G P+I F D  N   PQ +  +   
Sbjct: 214 -----------------DVEKRNIWAKVLESRQEKGLPYIFFSDNVNKNKPQVYKDLNMR 256

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +++SNLC+EI L SS +E+ +C L S+NL        +D  K    +R A+  LD V+  
Sbjct: 257 INASNLCSEIMLPSSRDESFICCLSSMNL------ELYDEWKDTEAVRLAIFFLDAVLQE 310

Query: 639 NCHTIE------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                E       A +    HRA+GLG++G+ S L    IP+   EA     E  + I  
Sbjct: 311 FIEKTEGNYYLTAANRFAKRHRALGLGVLGWHSYLQKNMIPFEGMEAKLRTTEIFKHIQS 370

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS ELA+  G     KG                                       
Sbjct: 371 KADKASEELARIYGEPELLKG--------------------------------------- 391

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  +AIAPT + + I G  S  I+P   N Y      G+F   N +L   L+
Sbjct: 392 ---YGRRNTTTLAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLE 448

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ + +E +   +  + GS+ +I  + ++ K +  T  EI  + +++ A+ RQK++DQ+Q
Sbjct: 449 EKGMDNEDVWRGIMLNGGSVQHIAELTENEKAVFKTFKEISQLEIVQQAAIRQKFVDQSQ 508

Query: 872 SLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRS 907
           SLNL +  P+    K+++ +  +AW +G+KT YY RS+S
Sbjct: 509 SLNLNI--PANLPVKEVNRLMIEAWQLGVKTLYYQRSQS 545


>gi|224475872|ref|YP_002633478.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420479|emb|CAL27293.1| ribonuceloside diphosphate reductase alpha chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 698

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 170/679 (25%), Positives = 294/679 (43%), Gaps = 77/679 (11%)

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            Y + F +Y EE +K        + F      +  K+ +D+A +    +   + Y  H+ 
Sbjct: 62  FYVDVFAQYSEEDLKELTDFARSIPFKFASYMSASKFFKDYALKTNDKKQYLEDYSQHV- 120

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369
                          + L L + +KE +A +F + +    +  +TPT  N+G  R  +L 
Sbjct: 121 -------------TIVSLYLADGDKE-QARQFISSMIEQRYQPATPTFLNAGRARRGELV 166

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+P  K
Sbjct: 167 SCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAK 226

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                    +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F
Sbjct: 227 SLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDIRLSTISTGLIVPAKF 286

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRK 548
            +       + +F+P  V   ++ YG    +I  + Y     +    +  K  A  +   
Sbjct: 287 FELAKNGEDFYMFAPHTV---YNEYGVTLDDIDLDKYYDDMVKNPNILKHKKDAREMLNT 343

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-- 599
           +     ++G+P++ FKD  N      ++G +  SNLCTEI        +N    E  +  
Sbjct: 344 IAQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKR 403

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N++     N  +  K   ++ T +  L  V D  N       +K+N    +
Sbjct: 404 DISCNLGSLNIV-----NVMESGKFRDSVHTGMDALTVVSDEANIQNAPGVRKANSELHS 458

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           +GLG+M     L    I Y S EA + A+     +++++I  S++ A+ERG AY  F  S
Sbjct: 459 VGLGVMNLHGYLAKNQIGYESEEAKDFANIFFMTMNYYSIERSMQTAKERGQAYQDFDKS 518

Query: 715 LWDQGVF--PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAP 768
            +  G +        ++ E     ++     +P    W  L+K VK  G+ ++  +AIAP
Sbjct: 519 DYASGKYFEKYTQADIVPEYEKVKSLFEGLEIPTAEDWKTLEKDVKEYGLYHAYRLAIAP 578

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P                     +V+++++R   +      + +  
Sbjct: 579 TQSISYVQNATSSVMP---------------------IVDQIERRTYGNSETFYPMPF-- 615

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                   +       + +AF  D M LI+  +  Q+ +DQ  S  LY++ E S ++L  
Sbjct: 616 --------LSPQTMWYYKSAFNTDQMRLIDLVATIQQHVDQGISTILYVNSEISTRELSR 667

Query: 888 IYRQAWLMGLKTTYYLRSR 906
           +Y  A   GLK+ YY R++
Sbjct: 668 LYVYAHHKGLKSLYYTRNK 686


>gi|289167886|ref|YP_003446155.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
 gi|288907453|emb|CBJ22290.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
          Length = 719

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 177/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  + +F      KGS +D+   G F   S  +    +D     
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFIPKSDRVKELFKDVFI-- 552

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + E IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|226312722|ref|YP_002772616.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
 gi|226095670|dbj|BAH44112.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
          Length = 694

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 169/656 (25%), Positives = 295/656 (44%), Gaps = 71/656 (10%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQA--FFMRVAMGLALKETEKEKRAVE 341
           L Y+ DF F  Y+ +   Y  Y L  N   + + Q       VA+ L   + +  KR   
Sbjct: 76  LAYDADFQFASYMAISKFYKDYALKTNDKSMYLEQYPDRVAVVALSLGQGDFDLAKRLT- 134

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             +++       +TPT  N+G +R  ++ SCFL  + D L  I   L     L+K  GG+
Sbjct: 135 -VSMMDQ-RLQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINFILGTCMQLSKIGGGV 192

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +RG G  I G  G ++GV+P LK+  D     +Q G+RKG+  AY   +  D+ 
Sbjct: 193 AVNLSKLRGRGEPIKGVEGAAKGVMPVLKLLEDAFSYADQMGQRKGSGAAYYNIFGWDIN 252

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P++F K   +N   T+F+P  V   + ++  + ++
Sbjct: 253 EFLDCKKINADEKARIKTLSIGLIVPNVFYKLAEENKPLTVFAPYSVYKEYGVHLDDMDL 312

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E YE       IK    +SA  +  K+  +  E+G+P+I  K   N     + +G V 
Sbjct: 313 D-EMYEELLANDRIKKKTVMSAREMLTKIAMIQMESGYPYIMNKTNANNNHALKDLGSVK 371

Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLCTEI       T+ +  E   +     CNL S+N++     N  +   +  ++   
Sbjct: 372 MSNLCTEIFQLQETSTITNYGEMDIIRRDISCNLASLNIV-----NVMERKMIRESVHEG 426

Query: 629 VRVLDNVIDI----NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  +  V D+    N   ++KA +  H+   +GLG M     L    I Y S EA + A 
Sbjct: 427 IEAITAVSDMTRVENAPGVQKANRELHS---VGLGAMNLNGYLAKNRIAYESEEAKDFAR 483

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------ 737
                ++F+++  S+E+A+E G  +  F+ S + +G +    +      R E A      
Sbjct: 484 TFFMMMNFYSLEKSMEIARETGMTFLGFEQSEYAKGTYFNKYVTNDYSPRTEKAKLLFEG 543

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           M+  +   W EL+++V+  G+ ++  +AIAPT +I+ I   + S+ P             
Sbjct: 544 MHIPTPADWAELQQKVQKHGVYHAYRLAIAPTQSISYIQNATSSVMP------------- 590

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                   +V  ++ R   +      + Y          +  +    + +A+ ID   +I
Sbjct: 591 --------IVEHIETRTYANSTTYYPMPY----------LSQENYFYYKSAYVIDQFKVI 632

Query: 858 ESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  +  Q+ IDQ  S  L+++   S ++L   Y  A   GLK+ YY R++  T  E
Sbjct: 633 DLIAEIQEHIDQGISTVLHVNSNISTRELARYYIYAAKKGLKSLYYTRTKHLTVEE 688


>gi|289444614|ref|ZP_06434358.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
 gi|289417533|gb|EFD14773.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
          Length = 726

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615


>gi|163742138|ref|ZP_02149526.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161384468|gb|EDQ08849.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
          Length = 765

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 162/610 (26%), Positives = 271/610 (44%), Gaps = 91/610 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I+   +  + R+A  LA  E++ +    +FY  L  F ++ +      +GT 
Sbjct: 19  FKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W                   E+ ++           K+++ + A
Sbjct: 195 VLVTDPFMEAVKADGSW-------------------ELIFDG----------KIYQTVQA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F D  N  +   +V  + ++N C E  L         C L
Sbjct: 226 RDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSINL A    N F      D + L   + TAVR++DNV+D++   ++   +     R I
Sbjct: 282 GSINL-ARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANI 775
                  D+   LA           + +  DE ++  ++  G+RN+   +IAPT TI+  
Sbjct: 396 -------DADAYLAS---------GTMMDMDEDVRDAIREHGIRNALLTSIAPTGTISLY 439

Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G VS  I+P +   Y +  +  D +     +V+   Q  +W +      K+ D      
Sbjct: 440 AGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------ 485

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
           + +PD        A  + P   ++  +  QKWID + S  +   E  S      +Y QAW
Sbjct: 486 KELPD----YFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQAW 541

Query: 894 LMGLK--TTY 901
            +G K  TTY
Sbjct: 542 DLGCKGCTTY 551


>gi|70727161|ref|YP_254077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447887|dbj|BAE05471.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 701

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 176/659 (26%), Positives = 290/659 (44%), Gaps = 83/659 (12%)

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLS 347
           +F F  Y+     Y  Y L  N  + +  + +   VA+  L L +  K+ +A +F   + 
Sbjct: 89  NFEFASYMSASKFYKDYALKTN-DKSQYLEDYNQHVAIVALYLADGNKQ-QAKQFILAMV 146

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N+G  R  +L SCFL  V D L  I         L+K  GG+  + + 
Sbjct: 147 EQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSK 206

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +
Sbjct: 207 LRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTK 266

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENY 525
           K   D+  R   ++T   +P  F     +   + +F+P  V      YG    +I  E Y
Sbjct: 267 KVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK---QEYGVTLDDIDLEKY 323

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHS 581
                     V +K  A    R+ML M+ +T    G+P++ FKD  N      ++G +  
Sbjct: 324 YDDMVANPNIVKKKKDA----REMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 379

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI        +N    E  +     CNLGS+N++     N  +  K+  ++ T +
Sbjct: 380 SNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIV-----NVMETGKIKDSVHTGM 434

Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D  N       +K+N    ++GLG+M     L    I Y S EA + A+    
Sbjct: 435 DALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFM 494

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--- 744
            +++++I  S+E+A+ERG  Y  F+ S +  G +             E    +  RL   
Sbjct: 495 MMNYYSIERSMEIAKERGEVYQDFEQSDYASGKY----FEFYTSQEFEPKFEKVKRLFDH 550

Query: 745 -------PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P             
Sbjct: 551 IDIPTAKDWKALQEQVQQHGLYHAYRLAIAPTQSISYVQNATSSVMP------------- 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                   +V+++++R   +      + +          +  +    + +AF  D M LI
Sbjct: 598 --------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFNTDQMKLI 639

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 640 DLIATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|215447327|ref|ZP_03434079.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T85]
          Length = 699

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583


>gi|296316021|ref|YP_003662485.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 5]
 gi|40456144|gb|AAR86122.1| UL39 ribonucleotide reductase large subunit [Bovine herpesvirus 5]
          Length = 800

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 172/662 (25%), Positives = 296/662 (44%), Gaps = 70/662 (10%)

Query: 296 LGLQ--ILYDRYFL-HINGSRIEMPQAFFMRVAMGLA---LKET--------EKEKRAVE 341
           LGLQ  + Y+  +L  + G  +E    FF+R+A   A   ++E         E       
Sbjct: 146 LGLQSALKYEEMYLAKLEGGALESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 205

Query: 342 FYNLLSSFH---FMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
           F   L++ +    + +TP +  +G     L+SC+L    V      +     E A +   
Sbjct: 206 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVTSSTEAVEAITTEVARILLN 265

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G  +     L      +    +G++  LK+ +  A+A+N   +R   +C Y+E WH
Sbjct: 266 RGGIGISFQSFNRLA-----SRDCKRGIMGALKLLDSMAMAINSDSERPTGICVYIEPWH 320

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509
            DV   L++R     D+  R  ++ +  W+PDL   R        +   WTLF  D  S 
Sbjct: 321 CDVRAVLNMRGMLARDESTRCDNLFSCLWVPDLLFDRYLAYLEGCEGVVWTLFD-DRASH 379

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L  L+G  F   YE  ER+    E    + ++ + +  + + M   TG P++ FKD CN 
Sbjct: 380 LSRLHGPAFAAEYERLEREGLGVEAVPVQDLAFLVV--RSIVM---TGSPFVMFKDACNR 434

Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
                  G  +  SNLCTEI   +  +   VCNL S+NL       +     FD+  L++
Sbjct: 435 HYHMDTAGDALTGSNLCTEIVQRADPDAHGVCNLASVNLPRCVREGEGGALAFDFAALST 494

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
              TA   ++ ++    +  E+A +    HR++G+G  G  + L  L +   SP A  + 
Sbjct: 495 AAATAAIFVNAMMLGGQYPTERAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLN 554

Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRT 741
            E  E +    ++ S  L +   A +  F  S + +G+ P D   G++      L++ R 
Sbjct: 555 VEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVV------LSLPRA 608

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  L+++V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+   
Sbjct: 609 ----WARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLR 664

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----TAFEIDPMWL 856
            N  L+  L++    + + +  ++  D    ++     DL   H      TAFE D   L
Sbjct: 665 PNLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERL 724

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLD-------FIYRQAWLMGLKT-TYYLRSRSA 908
           I+  + R  ++DQ+QS++L++ EP   K+         +Y  A+  GLKT  YY + R A
Sbjct: 725 IDLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVY--AYKKGLKTGLYYCKIRKA 782

Query: 909 TS 910
           T+
Sbjct: 783 TN 784


>gi|289759176|ref|ZP_06518554.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
 gi|289714740|gb|EFD78752.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
          Length = 693

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDRIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583


>gi|260206384|ref|ZP_05773875.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis K85]
          Length = 751

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 186 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 245

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 246 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 302

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 303 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 360 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 415 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 475 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 534

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 535 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 583


>gi|322389172|ref|ZP_08062733.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
 gi|321144077|gb|EFX39494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
          Length = 719

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E+ A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEEIAKDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E   +     CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F   + G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGAFVPKSDRVKELFKDIFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|4490609|emb|CAB38642.1| ribonucelotide reductase major subunit [Staphylococcus aureus]
          Length = 718

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 278/608 (45%), Gaps = 77/608 (12%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L    I Y S EA
Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEA 502

Query: 680 VEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGL 728
            + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      
Sbjct: 503 KDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEK 560

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ D +A+  +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 561 VRELFDGMAIPTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP---- 614

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                            +V+++++R   +      + +          +         +A
Sbjct: 615 -----------------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYCKSA 647

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 648 FNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK- 706

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 707 LLSVEECT 714


>gi|257870056|ref|ZP_05649709.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804220|gb|EEV33042.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 719

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 171/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F F+ ++     Y +Y L  N     + +++  RVA          E+ A+   + +
Sbjct: 88  EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ESYEDRVAFNALYFADGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGIPFSYIDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DNLVMNPNIRK-TKIKARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N  D      ++R   R L 
Sbjct: 383 SEILQVQEPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D +      +I+     NHT   IGLG MG  +      + Y SPE++E  D     
Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G +  D I G      D++ A+     +P 
Sbjct: 495 LNYWTLVESNNIAKERGEVFHNFEKSAYADGSYFTDYITGDYQPKSDKIKALFDGVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L + VK  G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 GEDWAALAEAVKKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N      D    + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN------DTIGYYRSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            QK +DQ  S+ L++  D P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETSKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|254233681|ref|ZP_04927006.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
 gi|124599210|gb|EAY58314.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
          Length = 732

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615


>gi|297519662|ref|ZP_06938048.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
          Length = 513

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 154/549 (28%), Positives = 252/549 (45%), Gaps = 67/549 (12%)

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL  
Sbjct: 1   KRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHA 60

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +Y
Sbjct: 61  HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVY 117

Query: 515 GKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           GK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P 
Sbjct: 118 GKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI 177

Query: 574 QHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI  +NS+SE               CNLGS+N +AH      D    
Sbjct: 178 --AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLN-IAH----TMDSPDF 230

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 231 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 290

Query: 681 EIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +          + E
Sbjct: 291 DFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 350

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 351 LFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 410

Query: 792 -KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K   +G       F+ NE       + A+  D                        A+E
Sbjct: 411 RKEGKTGRVYYPAPFMTNE-------NLALYQD------------------------AYE 439

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 440 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQ-M 498

Query: 910 SVEKSTLKG 918
           ++E + ++G
Sbjct: 499 ALEGTEIEG 507


>gi|289575761|ref|ZP_06455988.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
 gi|289540192|gb|EFD44770.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
          Length = 783

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615


>gi|322376537|ref|ZP_08051030.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
 gi|321282344|gb|EFX59351.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
          Length = 719

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 177/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSF------KGSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  + +F      KGS +D+   G F   S  +    +D     
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFI-- 552

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 553 -PSAADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + E IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|260432613|ref|ZP_05786584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416441|gb|EEX09700.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 760

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +      +FY  L  F ++ +      +GT R   L +CF + T+PD +
Sbjct: 37  RIARDLARVEKDPAHWEQKFYEALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA +HG    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVHGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +A W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMSVLVTDAFMEAVKADASWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                               + KV+  + A  LW K++   ++   P 
Sbjct: 213 LVF-----------------------------DGKVYHTVQARDLWNKIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANN-Q 615
           + F D  N  +   +   + ++N C E  L         C LGSINL     A F +  Q
Sbjct: 244 VIFIDRINQANNLSYAETIAATNPCGEQPL----PPYGACLLGSINLARLVSAPFEDAAQ 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   + TAVR++DNV+D +   + +        R IGLG+ G   AL +L + Y 
Sbjct: 300 LDEAALQELVATAVRMMDNVVDASKFPLPQQAAEAQAKRRIGLGVTGLADALLMLGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  +  I+  A  ASV+LA+E+GA+  F    +                   
Sbjct: 360 SDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFDAEKY------------------- 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           LA     ++  D++++ ++  G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LASGTMQQMD-DDVREAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   Q  +W +             G++E +PD        A  + P 
Sbjct: 460 LQKDGSRTEEEVVDYAVQ--MWRD-----------KFGDVE-LPD----YFVNAQTLTPA 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
             ++  +  QKWID + S  +   E  S      +Y QAW  G K  TTY
Sbjct: 502 EHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQAWDQGCKGCTTY 551


>gi|168493104|ref|ZP_02717247.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576680|gb|EDT97208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
          Length = 719

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMKDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPG 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 VADWTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|257415188|ref|ZP_05592182.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257157016|gb|EEU86976.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
          Length = 719

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 175/685 (25%), Positives = 308/685 (44%), Gaps = 86/685 (12%)

Query: 261 EEGVKARLLHESMMDF-DLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQ 318
           E+ ++   + +  MDF + +Y   D   ++ F F+ ++     Y +Y L  N +  E  +
Sbjct: 63  EDFIETEFIEKYSMDFIEKLYAFLD---KQHFQFKSFMAAYKFYSQYALK-NNAGTEYLE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
            +  RVA          E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V 
Sbjct: 119 TYEDRVAFNALYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVT 178

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  I  ++     L++  GG+G   + +R  GA I G +G + GV+P +K+  D+   
Sbjct: 179 DDMNSIGRSINSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSY 238

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL  +H D+E FL  +K   D++ R   ++    +PD F +    N 
Sbjct: 239 SNQLGQRQGAGVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNE 298

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP  V   + +     +I  E Y+       I+  RKI A  L  ++  +  E+G
Sbjct: 299 DMYLFSPYSVEREYGVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKLQQESG 356

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSI 605
           +P+I   D  N  +P    G +  SNLC+EI        +N   E   +     CNLGS 
Sbjct: 357 YPYIINIDTANKNNPID--GKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGST 414

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLM 661
           N++     N  +      ++R   R L  V D +      TI+   + +HT   IGLG M
Sbjct: 415 NIV-----NLMESPDFGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHT---IGLGAM 466

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
           G  +     H+ Y S E+++  D     +++  +  S ++A+ER   + +F+ S +  G 
Sbjct: 467 GLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESNQIAKERNQVFHNFEKSDYASGA 526

Query: 721 FPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +    I G      D++  + +  ++P    W  L+  VK  G+ + N +A+AP  +I+ 
Sbjct: 527 YFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISY 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   S SI P                     +   +++R    E  I  + Y    + N 
Sbjct: 587 INDTSASIHP---------------------ITRMIEER---QEKKIGKIYYPAPYLAN- 621

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG---------- 882
           + IP      + +A+++D   +I+  +  Q+ +DQ  SL L++  + P G          
Sbjct: 622 DTIP-----YYTSAYDMDMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQ 676

Query: 883 --KKLDFIYRQAWLMGLKTTYYLRS 905
             + L+ +   A+  G+K+ YY+R+
Sbjct: 677 TTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|146329736|ref|YP_001209517.1| ribonucleotide-diphosphate reductase subunit alpha [Dichelobacter
           nodosus VCS1703A]
 gi|146233206|gb|ABQ14184.1| ribonucleotide reductase, alpha subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 573

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 160/579 (27%), Positives = 256/579 (44%), Gaps = 108/579 (18%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F++ L+  ++  S+P   N G       SCF + + D +Y I     E  M++K  GG  
Sbjct: 75  FFHYLARGYYSFSSPIWSNFGLARGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGGGTS 134

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  H D+EE
Sbjct: 135 AYFGAIRPRGSDIR-DNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIEE 193

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           +L              D++T      L    V  +  W                      
Sbjct: 194 WL--------------DIHTEGNPIQLMYYGVCISHQWLA-------------------- 219

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
               E +A   E +         +W K+L    ETG P++ FKD  N   P  +  +   
Sbjct: 220 ----EMKAGDSEKR--------RIWAKVLQRKSETGIPYLFFKDNANAGRPDVYKDLNLP 267

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-- 636
           +++SNLCTEI L +S EE+ VC L S+NLL       ++  K    +   V  LD V+  
Sbjct: 268 IYASNLCTEIMLPASEEESFVCCLSSMNLL------YYEEWKNTDAVELLVYFLDAVMTE 321

Query: 637 ----DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +   +E+A++    HRA+GLG++G+ S L   H+P+ S  A++  +E  + +  
Sbjct: 322 FIEKSADLPFLERARRFAMRHRALGLGVLGWHSYLQSQHLPFDSLAAMQKNNEIFQLLQR 381

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             +SAS  LA+  G     +G                                       
Sbjct: 382 KTLSASRTLAEHLGEPEILRG--------------------------------------- 402

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M++APT + + I G VS S++P   N +VK       T  N FLV  L 
Sbjct: 403 ---YGRRNTTLMSVAPTKSSSFILGSVSPSVEPLKSNYHVKDLAKIKTTYKNPFLVALLA 459

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E     +  +DGS+ ++  + D+ K I  T  EI+ + +I+ A++RQK+IDQ Q
Sbjct: 460 EKGLDTETTWESILLNDGSVQHLPDLSDEEKAIFKTFSEINQLSIIQQAAQRQKYIDQGQ 519

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           S+NL +  D P+ + ++ +Y  A  +G+K+ YY  S SA
Sbjct: 520 SINLMIHPDTPT-RDINQLYLTAAELGVKSIYYQHSMSA 557


>gi|225854652|ref|YP_002736164.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae JJA]
 gi|225723895|gb|ACO19748.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae JJA]
          Length = 719

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A++  N +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + + 
Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P  
Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373

Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI        +N + E         CNLGS N++    +  F      
Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426

Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +IR  VR L  V D    +   TI+      HT    GLG MG  S L    I Y SPE
Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736
           +VE        +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +
Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             + +   +P    W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  
Sbjct: 544 KELFKNVFIPGVADWTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y    + + E IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L++  D P G            + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYVRT 701


>gi|289746859|ref|ZP_06506237.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
 gi|289687387|gb|EFD54875.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
          Length = 783

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 242/529 (45%), Gaps = 42/529 (7%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 101 DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 160

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 161 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 217

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +    T +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+
Sbjct: 218 VALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDI 277

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF- 518
             FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F 
Sbjct: 278 YRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFA 334

Query: 519 EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +I+  E Y    D   I+   KI A   ++ +  + FE+G+P+I F+D  N  +P    G
Sbjct: 335 DISVTEKYYEMVDDARIRK-TKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPID--G 391

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S+              +   CNLGS+N+         D    A TI
Sbjct: 392 KITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLNIA-----KTMDSPDFAQTI 446

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +
Sbjct: 447 EVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTN 506

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                + +HA+ AS  +A ERG  +  F+ S +  G F       + E +     +L  +
Sbjct: 507 IYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFAD 566

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              R+P    W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P
Sbjct: 567 AGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHP 615


>gi|163786627|ref|ZP_02181075.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878487|gb|EDP72543.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 599

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 162/597 (27%), Positives = 256/597 (42%), Gaps = 126/597 (21%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A +FY  ++  ++  ++P   N G +     SCF + + DD+  I     E  M++K  G
Sbjct: 87  ADKFYGYMAEGYYSLASPVWSNFGKKRGLPISCFGSHISDDMGDILYTQSEVGMMSKLGG 146

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  GA +   NG+S G +  +++       V+QG  R+G    YL   H D
Sbjct: 147 GTSGYFGKLRHRGAPVK-NNGESSGAVHIMQLFEKMVDVVSQGSVRRGRFSPYLPIEHND 205

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           + EFL++       +  TH +   N W+ ++                             
Sbjct: 206 INEFLEIGTEGNPIQELTHGVTVGNEWMQEM----------------------------- 236

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQ 574
             I  +  +R                A+W K+L    E G+P+I FKD  N  +P   Q+
Sbjct: 237 --IDGDTEKR----------------AIWAKVLQRRGEIGYPYIFFKDNANNTAPEVYQE 278

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632
           +   +++SNLC+EI L ++   + VC L SINLL         YDK   T  + T V  L
Sbjct: 279 NKHEIYASNLCSEIMLPTNDRWSFVCVLSSINLL--------HYDKWKDTDAVETMVYFL 330

Query: 633 DNVID------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           D V++                       +EKA      +RA+G+G +G+ S L    +P+
Sbjct: 331 DAVLEEFVTKLEVYRDSPDRDDRQTFMFMEKAYNFAKENRALGMGALGWHSLLQSKMLPF 390

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  E  + I   ++ AS ELA++ G     KG                     
Sbjct: 391 DSAEAFNLNSEIFKTIKEKSVKASEELAEKFGEPEVMKG--------------------- 429

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                                 G RN+   A+APT + A I G VSQ I+P + N YVK 
Sbjct: 430 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNSYVKD 468

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                 T+ N FL   LK++ +    +   ++ +DGS+ ++E + +  K +  T  EID 
Sbjct: 469 IAKIKTTIKNPFLKALLKEKGMDTVEIWKSIRDYDGSVQHLEGLTELEKDVFKTYSEIDQ 528

Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           M +I  A+ RQ  IDQ QSLN+ +  D P  K ++ +Y  AW +G+K+ YY  S +A
Sbjct: 529 MTIIYQAANRQNHIDQGQSLNIMVHPDMPV-KDINKLYVTAWQLGVKSLYYQHSMNA 584


>gi|312867246|ref|ZP_07727456.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
 gi|311097375|gb|EFQ55609.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
          Length = 719

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E   +     CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+   K  HT    GLG MG  S L    I Y SPE++E        
Sbjct: 438 FVTDSSHIVAVPTIDHGNKLAHT---FGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFML 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F   + G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|162417878|ref|YP_001604552.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
 gi|162350850|gb|ABX84799.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
          Length = 548

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 159/547 (29%), Positives = 239/547 (43%), Gaps = 57/547 (10%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++DG++   L  AL+ S+  LI  E PNY +V AR  L K+R++                
Sbjct: 16  IFDGMTTCQLHEALVKSAADLISPETPNYLQVAARLNLFKIRKDAFG------------- 62

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDF----DLVYLANDLKYERDFAFEYLGLQILYD 303
            Q  YP ++  +I   V   +  E ++ +    ++  L   +K +RD  F Y     L  
Sbjct: 63  -QYDYPNFY-NHIVSNVSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLAS 120

Query: 304 RYFLH--INGSRIEMPQAFFMRVAM--------GLALKETEKEKRAVEFYNLLSSFHFMC 353
           +Y +   + G+  E PQ  +M V M        G A K   +  R   FY++ S+F    
Sbjct: 121 KYLVQNRVTGAIYEGPQQLYMLVGMCLFQNWEDGCAGKTRLEMVRG--FYDVTSTFKLSL 178

Query: 354 STPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            TP +  +G R P  Q SSC L    D L GI  A            G+G  +  +R LG
Sbjct: 179 PTPIM--AGVRTPTRQFSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALG 236

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I        GVIPFLK       + +QGG R GA  A+   WH++VE  L L+ N G 
Sbjct: 237 SEIRNGEATHTGVIPFLKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGI 296

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQ 528
           +  R   ++    I  L  +R+  N   TLFSP +V  L+D +     +FE  Y  YE  
Sbjct: 297 EENRVRHLDYGVMINRLMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYE-- 354

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587
           AD    K  + I AV L+  ++     TG  +I   D  N        +  VH SNLC E
Sbjct: 355 ADESIRK--KSIPAVDLFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCME 412

Query: 588 ITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           ITL        +  + E A+C L + NL A         D L      AV  LD+++D  
Sbjct: 413 ITLPTKPLAFTDDPNGEIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQ 467

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +  A+      R++G+G+  F   L      Y+     ++  E+ E I ++ + AS 
Sbjct: 468 DYPMAAAEIPAKARRSLGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASC 527

Query: 700 ELAQERG 706
            LA+E+ 
Sbjct: 528 RLAEEKA 534


>gi|322515074|ref|ZP_08068082.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118954|gb|EFX91131.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 554

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 162/592 (27%), Positives = 263/592 (44%), Gaps = 116/592 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 169 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 205

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 206 --------DPYKRQ----------------LWAKLLQRKTETGIPYLFFKDNANAGRPDV 241

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      VH+SNLCTEI L SS++E+ VC L S+NLL         +D+   T   A  V
Sbjct: 242 YKDKNMTVHASNLCTEIMLPSSNDESFVCCLSSMNLLY--------FDEWKDT--EAPEV 291

Query: 632 LDNVIDI----------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           L   +D+          +   +++A +    HRA+GLG++G+ S L   +I + S +A++
Sbjct: 292 LTYFLDVVMSEFIEKSKDMPFLDRAHRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQ 351

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             +   + +    + AS ELA+  G     KG                            
Sbjct: 352 KNNLIFKTLQEKTLKASQELAKRFGEPEILKG---------------------------- 383

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800
                          G RN+  M+IAPT + + I G VS S++P   N YVK        
Sbjct: 384 --------------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTV 429

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N FL   L+++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A
Sbjct: 430 YKNPFLEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQA 489

Query: 861 SRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++RQK+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 490 AQRQKYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|226940518|ref|YP_002795592.1| NrdE [Laribacter hongkongensis HLHK9]
 gi|226715444|gb|ACO74582.1| NrdE [Laribacter hongkongensis HLHK9]
          Length = 947

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 172/629 (27%), Positives = 273/629 (43%), Gaps = 80/629 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL- 380
           RVA  LA +E E  + A  FY  +    F+        +GT     L +CF+  V D + 
Sbjct: 37  RVAAALAGQEQEPSRHAESFYWAMEQ-GFIPGGRINSAAGTELSATLINCFVQPVGDSVS 95

Query: 381 ------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                  GI+ AL + A   +  GG+G ++T +R  GA + GTN ++ G + +++V + +
Sbjct: 96  ETRDGKVGIYEALLQAAETMRRGGGVGYNFTRIRPKGARVKGTNSRASGPVSYMRVFDRS 155

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L+  H D+E F+   K+ GD R    + N +  + D FM+ V 
Sbjct: 156 CETVESAGARRGAQMGVLDCDHPDIESFIHA-KDAGDLR----NFNISVGVSDAFMQAVE 210

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L   +E         KEF  A +  + +       V+R + A  LW +++   +
Sbjct: 211 ADGSWELVHKEEPDR------KEFPDACQRADGKW------VYRAVRARDLWNQIMESTY 258

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           +   P + F    N  +   +  V+ S+N C E  L     +   C+LGSINL       
Sbjct: 259 DHAEPGVLFMSKINRDNNLSYCEVIESTNPCGEQPL----PDYGCCDLGSINLTRFVRDP 314

Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             A   FD+      +R +VR+LDNV+D+    + + ++   + R IGLG  G   AL +
Sbjct: 315 FTAKAGFDFATFDKVVRQSVRMLDNVLDLTVWPLPEQQREAQSKRRIGLGFTGLGDALIM 374

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y+S      A    E +   A  ASV+LA E+GA+  F            D+   L
Sbjct: 375 LTIKYSSDAGRAFAARVSEAMRNSAYDASVDLAIEKGAFPLF------------DADQYL 422

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQ 787
           AE       +  SRLP  E+K R+K  G+RNS+ ++IAPT TI  A     S  I+P + 
Sbjct: 423 AEP------HCASRLP-KEIKARIKKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIH 845
             Y +     D T                 E  + D  Y  +    G++  +PD      
Sbjct: 476 WFYTRKKRMADGTQ---------------QEYRVEDHAYRVYRELGGDVSSLPD----YF 516

Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            +A E+  +  +   +    +ID A  +++N+  D P     + +Y +AW  GLK     
Sbjct: 517 VSALEMSALDHMSMVAAVAPFIDTAISKTVNVPADYPFA-DFESLYIEAWRAGLKGITTY 575

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           R  S      S     +   +  P  DP+
Sbjct: 576 RPNSVLGSVLSVEPTRETPADLPPSDDPD 604


>gi|15901044|ref|NP_345648.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TIGR4]
 gi|15903109|ref|NP_358659.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae R6]
 gi|111657124|ref|ZP_01407909.1| hypothetical protein SpneT_02001650 [Streptococcus pneumoniae
           TIGR4]
 gi|116516073|ref|YP_816516.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae D39]
 gi|148985788|ref|ZP_01818916.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990436|ref|ZP_01821594.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|148994531|ref|ZP_01823711.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|148999043|ref|ZP_01826475.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|149004131|ref|ZP_01828934.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|149008158|ref|ZP_01831677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149013340|ref|ZP_01834071.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026428|ref|ZP_01836565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483242|ref|ZP_02708194.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486505|ref|ZP_02711013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489009|ref|ZP_02713208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|168577271|ref|ZP_02723065.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|221231889|ref|YP_002511041.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|225856855|ref|YP_002738366.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae P1031]
 gi|225858967|ref|YP_002740477.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 70585]
 gi|225860978|ref|YP_002742487.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237649544|ref|ZP_04523796.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822454|ref|ZP_04598299.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229750|ref|ZP_06963431.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255395|ref|ZP_06978981.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502820|ref|YP_003724760.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067833|ref|YP_003876799.1| ribonucleotide reductase subunit alpha [Streptococcus pneumoniae
           AP200]
 gi|307127226|ref|YP_003879257.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 670-6B]
 gi|14972660|gb|AAK75288.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458688|gb|AAK99869.1| Ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           pneumoniae R6]
 gi|116076649|gb|ABJ54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae D39]
 gi|147755113|gb|EDK62168.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|147757864|gb|EDK64874.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760397|gb|EDK67376.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762930|gb|EDK69877.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922092|gb|EDK73215.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924288|gb|EDK75382.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|147927201|gb|EDK78237.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929259|gb|EDK80260.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043335|gb|EDT51381.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570440|gb|EDT90968.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572571|gb|EDT93099.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|183577174|gb|EDT97702.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|220674349|emb|CAR68895.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae ATCC 700669]
 gi|225721006|gb|ACO16860.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 70585]
 gi|225725183|gb|ACO21035.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae P1031]
 gi|225727917|gb|ACO23768.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238415|gb|ADI69546.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301794278|emb|CBW36699.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV104]
 gi|301800115|emb|CBW32716.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae OXC141]
 gi|306409370|gb|ADM84797.1| Ribonucleotide reductase, alpha subunit [Streptococcus pneumoniae
           AP200]
 gi|306484288|gb|ADM91157.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 670-6B]
 gi|327389422|gb|EGE87767.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA04375]
 gi|332073522|gb|EGI84001.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17570]
 gi|332074794|gb|EGI85266.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41301]
 gi|332075111|gb|EGI85582.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17545]
 gi|332200631|gb|EGJ14703.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41317]
 gi|332201650|gb|EGJ15720.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47368]
 gi|332203033|gb|EGJ17101.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47901]
          Length = 719

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A++  N +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + + 
Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P  
Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373

Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI        +N + E         CNLGS N++    +  F      
Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426

Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +IR  VR L  V D    +   TI+      HT    GLG MG  S L    I Y SPE
Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736
           +VE        +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +
Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             + +   +P    W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  
Sbjct: 544 KELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y    + + E IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L++  D P G            + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYVRT 701


>gi|270307517|ref|YP_003329575.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153409|gb|ACZ61247.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 585

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 166/626 (26%), Positives = 269/626 (42%), Gaps = 87/626 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G+  E  +  F RVA  +A  E       +    A EFY +++ F F+
Sbjct: 10  VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYCMMTGFEFL 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G     LSSCF+  V D + GI   + E  ++ +Y GG G  +  +R    
Sbjct: 70  PNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFAFDAIRPEDD 129

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   +  + G +  + V ++ A  + Q G R G   A L   H D+ +F+  +    D+
Sbjct: 130 PVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
              + +      + D F+++V   A + L +P                      R     
Sbjct: 186 GNHSANFGINIALTDSFIQKVRLGADYELVNP----------------------RTG--- 220

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++ C    L  
Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278

Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               T    LG+INL           + DY +L   I  AVR LD+V+++N +   + +K
Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLITKAVRFLDDVLEVNRYPTAEVEK 334

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IGLG MGF   L  L I Y S +AV  ADE M F+   A  A+ ELA ERGA+
Sbjct: 335 AAKATRKIGLGFMGFAEMLIKLGIRYDSADAVSAADELMAFVKEAACQATEELALERGAF 394

Query: 709 SSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            +F GS++  +G  P                                    RN+ C+   
Sbjct: 395 PAFAGSIYAKRGAKP-----------------------------------RRNATCLTFT 419

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY 826
            T T + I   S  I P Y  + V++ + G   + +N       ++R  +  A+I  L  
Sbjct: 420 NTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKLLT 479

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKK 884
            + S  N   IP+D +++  TA +I P W I   +  QK+ D A  Q++N +    S + 
Sbjct: 480 GE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVN-FPANASVED 537

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  ++ +A  +GLK     R  S  S
Sbjct: 538 IADLFLKAHELGLKGVTAYRDSSRES 563


>gi|194398211|ref|YP_002037787.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae G54]
 gi|194357878|gb|ACF56326.1| ribonucleoside-diphosphate reductase, alpha subunitv [Streptococcus
           pneumoniae G54]
          Length = 719

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 269/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A++  N +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + + 
Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVP 315

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P  
Sbjct: 316 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 373

Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI        +N + E         CNLGS N++    +  F      
Sbjct: 374 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 426

Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +IR  VR L  V D    +   TI+      HT    GLG MG  S L    I Y SPE
Sbjct: 427 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL 736
           +VE        +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +
Sbjct: 484 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRV 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             + +   +P    W EL+ +V+  G+ + N +A+AP  +I  I  VS SI P  Q +  
Sbjct: 544 KELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSIXYINDVSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y    + + E IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L++  D P G            + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYVRT 701


>gi|307706627|ref|ZP_07643434.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
 gi|307618082|gb|EFN97242.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
          Length = 719

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G +    I G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYITGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|55821275|ref|YP_139717.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMG 18311]
 gi|55823188|ref|YP_141629.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus CNRZ1066]
 gi|116628013|ref|YP_820632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMD-9]
 gi|55737260|gb|AAV60902.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           LMG 18311]
 gi|55739173|gb|AAV62814.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           CNRZ1066]
 gi|116101290|gb|ABJ66436.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278605|gb|ADQ63262.1| Ribonucleoside-diphosphate reductase [Streptococcus thermophilus
           ND03]
          Length = 719

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 174/656 (26%), Positives = 287/656 (43%), Gaps = 82/656 (12%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           + F F+ ++     Y +Y L  N     + ++F  RV           E  A +  N + 
Sbjct: 89  QKFRFQSFMAAYKFYQQYALKTNDGETYL-ESFEDRVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYE 523
           K   D++ R   ++    +PD F +    N    LFSP     +   YGK +   +I   
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSP---YSIEKEYGKPYNYIDITAM 324

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 325 YDELVANPNITKT--KINARELETEISKLQQESGYPYIINIDTANRHNPID--GKIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        LN S E   +     CNLGS N+L    +  F       +I+T  R 
Sbjct: 381 LCSEILQVQTPSELNDSQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRA 435

Query: 632 LDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +   K  N      GLG MG  S L   HI Y SPE++E  +     +
Sbjct: 436 LTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESIEFTNIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP-- 745
           ++  +  S  +A+ER   +  F+ S + D   F     G      D +  +     +P  
Sbjct: 496 NYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRVKELFEGHFIPQA 555

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +              
Sbjct: 556 KDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------- 601

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +  
Sbjct: 602 -----EERQ-----EKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKLTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|293556437|ref|ZP_06675015.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601401|gb|EFF31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 625

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 161/605 (26%), Positives = 273/605 (45%), Gaps = 92/605 (15%)

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   L     L++  GG+G + 
Sbjct: 50  LISQRYQPATPTFLNAGKKRRGEMVSCFLIDIDDSMLSIGRNLNSALQLSRIGGGVGVNL 109

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R +GA I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL 
Sbjct: 110 SNLRAMGAPIKEIANASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILNFLS 169

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LF+P  V     +YG  F  +Y +
Sbjct: 170 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNQPMYLFNPYHV---ERVYGIPF--SYVD 224

Query: 525 YERQADRGEIK-VFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
             ++ D   +     K  I+A  L +++  +  E+G+P+I   D  N  +P +  G +  
Sbjct: 225 LTKEYDNMVVNDTIEKTVINARELEQEISRLQQESGYPYIINIDTANRTNPVK--GKIIM 282

Query: 582 SNLCTEIT-----------LNSSSEETAV-CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI            LN     T + CNLGS+N++    ++ F       +I  AV
Sbjct: 283 SNLCSEILQPQEPSKLNADLNYKQVGTDISCNLGSMNMVNLMKSSDF-----GKSIEYAV 337

Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D ++   +    K N  +  IGLG MG  +AL L  + Y S EA+E  D    
Sbjct: 338 RALTTVTDQVHIEEVPTVSKGNALYHTIGLGAMGLHTALALNGLDYESEEALEFVDAFFL 397

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGV-----------FPIDSIGLLAEVRDEL 736
            ++++ + AS ++A E+  A+  F+ S +  G            F  D +    E+  ++
Sbjct: 398 AMNYYTLKASHQIAVEKSEAFHDFESSHYADGTYFDKYLEKDFEFQFDKVN---EIFKQI 454

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           ++   S   W +LK+ +   G+ + N +AIAP  +I+ I   S S+ P  Q +       
Sbjct: 455 SLPTVS--DWQQLKEDIMHDGLYHRNRLAIAPNGSISYINETSASLHPITQLI------- 505

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                       E +Q     E  +  + Y    + N         + + TA+ +D   +
Sbjct: 506 ------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQRKI 542

Query: 857 IESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTT 900
           I+  ++ Q+ IDQ  SL L++    P G              + L+ +   AW  G+K+ 
Sbjct: 543 IDIYAKAQQHIDQGMSLTLFMRSVLPEGVYEWKSPGNSQLTTRDLNRLRNYAWTKGIKSL 602

Query: 901 YYLRS 905
           YY+R+
Sbjct: 603 YYVRT 607


>gi|296876815|ref|ZP_06900863.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432317|gb|EFH18116.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 719

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E   +     CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+   K  H+    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNKLAHS---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F   + G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|309800431|ref|ZP_07694592.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
 gi|308115947|gb|EFO53462.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
          Length = 719

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 174/664 (26%), Positives = 291/664 (43%), Gaps = 96/664 (14%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSKAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--- 745
           +++  +  S  +A+ERG  + +F+ S +  G +          + DE  + ++ R+    
Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGSY------FDKYLTDEF-LPKSDRVKELF 547

Query: 746 ----------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +      
Sbjct: 548 KDIFIPTAADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------ 601

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                        E +Q     E  I  + Y    + + E IP      + +A+++D   
Sbjct: 602 -------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRK 637

Query: 856 LIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTY 901
           +I+  +   + +DQ  SL L++  D P+G            + L  +   A+  G+K+ Y
Sbjct: 638 VIDVYAAATEHVDQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIY 697

Query: 902 YLRS 905
           Y+R+
Sbjct: 698 YVRT 701


>gi|322372697|ref|ZP_08047233.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
 gi|321277739|gb|EFX54808.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
          Length = 719

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 173/658 (26%), Positives = 288/658 (43%), Gaps = 82/658 (12%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y ++F F+ ++     Y +Y L  N  +  + ++   RV           E  A +  N 
Sbjct: 87  YSQNFRFQSFMSAYKFYQQYALKTNDGQAYL-ESIEDRVLFNALYFADGDEHLASDLANE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDILAFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521
            +K   D++ R   ++    +PD F +   +N    LFSP  V      YGK F   +I 
Sbjct: 266 TKKENADEKVRVKTLSLGVTVPDKFYELARKNEEMYLFSPYSV---EKEYGKPFNYIDIT 322

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  
Sbjct: 323 AMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHNPID--GKIVM 378

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI        LN + E   +     CNLGS N+L    +  F       +I+   
Sbjct: 379 SNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKAMT 433

Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D +    +   K  N      GLG MG  S L   HI Y SPE+VE  +    
Sbjct: 434 RALTFVTDSSSIEAVPSIKNGNQQAHTFGLGAMGLHSYLAKNHIEYGSPESVEFTNIYFM 493

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP 745
            +++  +  S  +A+ER   +  F+ S + D   F     G      D +  +     +P
Sbjct: 494 LMNYWTLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRVKELFDGHFIP 553

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P                 
Sbjct: 554 QAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHP----------------- 596

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               +   +++R    E  I  + Y    + + + IP      + +A+++D   +I+  +
Sbjct: 597 ----ITQRIEER---QEKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYA 643

Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 644 AATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|257865183|ref|ZP_05644836.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871508|ref|ZP_05651161.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874805|ref|ZP_05654458.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257799117|gb|EEV28169.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805672|gb|EEV34494.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808971|gb|EEV37791.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 719

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ERYEDRVAFNALYFADGNEELAMSLADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DNLVMNPRIRK-TKIRARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N  D      ++R   R L 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D +      +I+     NHT   IGLG MG  +      + Y SPE++E  D     
Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+E+G  + +F+ S +  G +  D I    + + E   A+     LP 
Sbjct: 495 LNYWTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L + VK  G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 GEDWAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E I       + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETI-----GYYKSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            QK +DQ  S+ L++  D P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|56478191|ref|YP_159780.1| ribonucleotide reductase, coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
 gi|56314234|emb|CAI08879.1| Ribonucleotide reductase, Coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
          Length = 963

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 183/644 (28%), Positives = 281/644 (43%), Gaps = 78/644 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA  LA+ E E +KRA      L +    F+ +      +GT     L +CF+  V D 
Sbjct: 46  RVARALAIVEAE-DKRAHWEAKFLEAQEKGFVPAGRINSAAGTNLQATLINCFVQPVGDS 104

Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +        GI+ AL + A   +  GG+G D++ +R  GA + GT   + G + +++V +
Sbjct: 105 VTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVRGTLSNASGPVSYMRVFD 164

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H DVEEF+   K+ GD      + N +  + D FMK 
Sbjct: 165 RSCETVESAGARRGAQMGVLRCDHPDVEEFIHA-KDHGD----LTNFNISVGVSDAFMKA 219

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A        +V   H     E   A   Y+R  D G + V+RK+ A  LW +++  
Sbjct: 220 VDTDA--------DVELAHKAEPIEELKAAGAYQR--DDG-LWVYRKLPARELWDQIMRS 268

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P I F D  N  +   +   + ++N C E  L         C+LGSINL     
Sbjct: 269 TYDHAEPGILFLDRMNQDNNLHYCETIEATNPCAEQPL----PPYGCCDLGSINLTPFIK 324

Query: 613 NN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +      +FDY      +  A+R+LDNV+D+    + + +    + R +GLG  G   AL
Sbjct: 325 HPFTDKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPLPQQENEAQSKRRVGLGFTGLGDAL 384

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L   Y SP+A  +A +  E++   A  ASVELA+ERGA+  F   L+  G        
Sbjct: 385 IMLCKRYDSPDARAVATKISEYMRDRAYLASVELAKERGAFPLFNADLYLSG-------- 436

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785
                      N  SRLP D LK +++  G+RNS+ ++IAPT TI  A     S  I+P 
Sbjct: 437 ----------GNFASRLPAD-LKDKIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPP 485

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +     D T    + V +   R          L  H G  GN+    D+L    
Sbjct: 486 FSYTYTRRKRMADGT-YKEYPVEDYAWR----------LFKHLG--GNV----DELPPYF 528

Query: 846 ATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            TA EI      +  +    ++D   ++++N+  D P  +  D +Y  AW  GLK     
Sbjct: 529 VTALEISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFED-LYLSAWKAGLKGLATY 587

Query: 904 RSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           R  S   SV   T      +   +  + PN       +P+   S
Sbjct: 588 RPNSVLGSVLSVTPSAAPKQPQDIEFSGPNKRLAIKSLPAPVLS 631


>gi|307709352|ref|ZP_07645810.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
 gi|307619935|gb|EFN99053.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
          Length = 719

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELRDKVQVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|307708707|ref|ZP_07645170.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
 gi|307615281|gb|EFN94491.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
          Length = 719

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 174/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELREQVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|325571549|ref|ZP_08147049.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156025|gb|EGC68221.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
          Length = 719

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFTFKSFMAAYKFYSQYALKTNDGTAYL-ERYEDRVAFNALYFADGNEELAMSLADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DNLVMNPRIRK-TKIRARDLENEISKLQQESGYPYIINIDTANRSNPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N  D      ++R   R L 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D +      +I+     NHT   IGLG MG  +      + Y SPE++E  D     
Sbjct: 438 FVTDASDIDVVPSIQNGNALNHT---IGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+E+G  + +F+ S +  G +  D I    + + E   A+     LP 
Sbjct: 495 LNYWTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L + VK  G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 GEDWAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E I       + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETI-----GYYKSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            QK +DQ  S+ L++  D P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQKHVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|182684088|ref|YP_001835835.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|303255567|ref|ZP_07341619.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|303260587|ref|ZP_07346553.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|303262721|ref|ZP_07348660.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265255|ref|ZP_07351166.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
 gi|303267602|ref|ZP_07353444.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|303269941|ref|ZP_07355679.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|182629422|gb|ACB90370.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|301801955|emb|CBW34683.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV200]
 gi|302597473|gb|EFL64567.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|302636153|gb|EFL66649.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638300|gb|EFL68769.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|302640523|gb|EFL70932.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|302642868|gb|EFL73173.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|302645226|gb|EFL75462.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
          Length = 719

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 168/610 (27%), Positives = 269/610 (44%), Gaps = 84/610 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A++  N +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 EAVAIDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V      Y
Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSV---EKEY 312

Query: 515 GKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           G  F      E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P
Sbjct: 313 GAPFNYIDITEKYDELVVNPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANP 371

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+EI        +N + E         CNLGS N++    +  F    
Sbjct: 372 VD--GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF---- 425

Query: 621 LASTIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
              +IR  VR L  V D    +   TI+      HT    GLG MG  S L    I Y S
Sbjct: 426 -GRSIRAMVRALTFVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGS 481

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRD 734
           PE+VE        +++  +  S  +A+ERG  + +F+ S +  G  F     G      D
Sbjct: 482 PESVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSD 541

Query: 735 ELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +  + +   +P    W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +
Sbjct: 542 RVKELFKNVFIPGVADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI 601

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                              E +Q     E  I  + Y    + + E IP      + +A+
Sbjct: 602 -------------------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAY 631

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLM 895
           ++D   +I+  +   + +DQ  SL L++  D P G            + L  +   A+  
Sbjct: 632 DMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNK 691

Query: 896 GLKTTYYLRS 905
           G+K+ YY+R+
Sbjct: 692 GIKSIYYVRT 701


>gi|322391985|ref|ZP_08065449.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
 gi|321145211|gb|EFX40608.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
          Length = 719

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREGGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G +    + G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGTYFDKYVTGEFVPKSDRIKELFKNVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELRDKVKVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPQGLYEWKSENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|329767979|ref|ZP_08259490.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838464|gb|EGF88072.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 696

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 162/590 (27%), Positives = 273/590 (46%), Gaps = 73/590 (12%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G 
Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+
Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R   ++T   +P LF     +N  + +F P  + + + L   + +IA    E  A+  
Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDIAKYYDEFVANEN 327

Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +K  RK  A    R ML ++ +T    G+P++ FKD  N     + +G V  SNLCTEI
Sbjct: 328 IMK--RKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKDHALREIGQVKMSNLCTEI 381

Query: 589 -------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                   +    E+  +     CNL S+N++     N  +  K+  +I + +  L  V 
Sbjct: 382 FQLQETSIIKDYGEDDIIKRDISCNLASLNIV-----NVMESKKIKESIYSGMDALTFVS 436

Query: 637 DINCHTIEKAK---KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             N   I+ A    K+N    ++GLG M     L    I Y S EA + A+     ++++
Sbjct: 437 --NSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNYY 494

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPW 746
            +  S+++A++R   +  F+ S +  G +       D + +  +V++    ++  +R  W
Sbjct: 495 TLERSMQIAKKRNETFKDFEKSDYYNGRYFTKYIENDYLPVTDKVKELFEGIHIPTREDW 554

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             LK RVK  G+ ++  MAIAPT +I+ +   + S+ P                     +
Sbjct: 555 RSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP---------------------I 593

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V+++++R   +      + Y          +    +  + +AF ID M LI+  +  Q+ 
Sbjct: 594 VDKIERRSYGNAETFYPMPY----------LSPKTQWFYKSAFTIDQMKLIDLMAVIQEH 643

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +DQ  S+ L+++ + + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 644 VDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|325284718|ref|YP_004264181.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
 gi|324316207|gb|ADY27321.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
          Length = 695

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 165/611 (27%), Positives = 278/611 (45%), Gaps = 73/611 (11%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386
           AL  +   + A+E  + L +  F  +TPTL NSG  +  +L SCFL     D+L  I   
Sbjct: 119 ALARSSNVEEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLNSITKT 178

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L   A L+K  GG+G + + +R  G  + G    ++GV+   K+ ++     +Q G+R G
Sbjct: 179 LSFVAELSKGGGGIGVEVSNLRARGESLRGIQNVTKGVMGVAKMLDNMLRYADQAGQRPG 238

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YL   H D  + L  +K   D+  R   ++    IPD+FM++V        F P  
Sbjct: 239 AGAIYLSVMHADFMDVLSAKKIASDEDSRLKTLSVGATIPDIFMQKVRSGEDIYQFYP-- 296

Query: 507 VSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
              +    G+EF  I + E Y+  AD   I+  +++SA  ++  +     E+G+P++ F+
Sbjct: 297 -YSIEQETGREFTSIDWNEEYQALADNPRIRK-KRVSARRVFEDIAITQGESGYPYLLFE 354

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEE-------TAVCNLGSINLLAH 610
              N  +P  +VG +  SNLC+EI         +   EE          CNL S+ +   
Sbjct: 355 GNANRANPIPNVGKILMSNLCSEILQPTRPSYFHPYGEEHKDRIGLDVSCNLSSLVI--- 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHL 669
                     +   +  A+R+LD+V      T +   K++N   R+IGLG MG  S L  
Sbjct: 412 --EQTMRSGDMGRVVGAAIRMLDDVARSTSVTEVPAVKRANDEMRSIGLGAMGLHSFLAK 469

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PI 723
             + Y S EA++  D     + +HA  AS+E+A++ G  ++ F+GS +  G +       
Sbjct: 470 NELIYGSEEALDFVDTFFAAVHYHARKASMEIARDTGFVFAGFEGSRYADGSYFEQYLAK 529

Query: 724 DSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           D     AEV    A+     LP    W +L + ++  G+ +S  MAIAPT +I+ +   S
Sbjct: 530 DFTPKTAEV---AALFEGHTLPTKEDWAQLVRDIQQHGLAHSFVMAIAPTGSISYVSHAS 586

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P  + +  +++                K R ++                 +  +  
Sbjct: 587 ASIMPITEKVETRTSN---------------KARTIYP----------------MPHLNV 615

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK 898
           D +  +  A+++D   ++++ +  Q+ +DQ  S  L++    S + L   Y QA+L G+K
Sbjct: 616 DTEWYYEEAYDMDMNRVLDTVATAQRHVDQGISCTLFVPGTCSTRDLQRYYIQAYLKGVK 675

Query: 899 TTYYLRSRSAT 909
           T YY R R  T
Sbjct: 676 TLYYTRMRKTT 686


>gi|222475860|ref|YP_002564381.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222454231|gb|ACM58495.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 562

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 260/593 (43%), Gaps = 117/593 (19%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++E  A  FY+ +S   +  ++P   N G       SCF + + D++  I     E   +
Sbjct: 55  DEEGFADRFYDYMSRGFYSLASPVWANFGLDSGLPISCFGSYMEDNMESILYTHAEVGEM 114

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG    +  +R  G+ I   NGKS G   F ++ +     V+QG  R+G    Y++
Sbjct: 115 TKLGGGTSGYFGDIRPRGSPIT-NNGKSNGSYSFTELFDTAINVVSQGETRRGQFAGYID 173

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+EE+L++ K  GD             + D+F   +                    
Sbjct: 174 VEHDDLEEWLNI-KTEGDP------------VQDIFYGVI-------------------- 200

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                 I  E ++   D  E K          W K++      G P+I F+D  N   PQ
Sbjct: 201 ------IGDEWFQEMVDGDEEKR-------ETWAKIIETRINIGVPYIIFRDNMNEGKPQ 247

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +      +++SNLCTEI L ++ +E+ VC L S+N L       +D  K    + T  R
Sbjct: 248 VYKDKDYEINASNLCTEIALPATPDESFVCCLSSMNAL------HYDEWKDTDAVETLTR 301

Query: 631 VLDNVIDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            LD V++           +E+A +    HRA+G+G++G+ S L    IP+ S EA++  +
Sbjct: 302 FLDAVMEEFIQKAEGTQFMERAVRFAKRHRAVGIGVLGWHSYLQSNMIPFDSMEAMQENE 361

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +    I   +  AS ELA E G     +G                               
Sbjct: 362 QIFRTIREKSYEASEELADEFGEPEMLEG------------------------------- 390

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                       G RN+  M++APT + + I G VS SI+P   N +V+       T  N
Sbjct: 391 -----------YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKN 439

Query: 804 SFLVNELKQR-----DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            FL   LK+R     ++WD      +  +DGS+ +++ + D+ K++  T  EI  M +I 
Sbjct: 440 RFLEAILKERGRDGREVWD-----SIAQNDGSVQHLDCLTDEEKEVFKTFAEIPQMAIIN 494

Query: 859 SASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            A++RQK IDQAQSLN+ +D  E S K+++ +Y +AW  G+K+ YY  S +A 
Sbjct: 495 QAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWKKGVKSLYYQHSVNAA 547


>gi|322516574|ref|ZP_08069488.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
 gi|322124844|gb|EFX96268.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
          Length = 719

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A +  N +    +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 ENLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ 
Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +    N    LFSP  V      Y
Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312

Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           GK +   +I     E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +
Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHN 370

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI        LN + E   +     CNLGS N+L    +  F   
Sbjct: 371 PID--GKIVMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425

Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               +I+   R L  V D +    +   K  N      GLG MG  S L   HI Y SPE
Sbjct: 426 --GRSIKAMTRALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736
           +VE  +     +++  +  S  +A+ER   +  F+ S + D   F     G      D +
Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRI 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +     +P    W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  
Sbjct: 544 KELFEGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y   S+ + + IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANSL-STDTIP-----FYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L+L              ++ + + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYIRT 701


>gi|312862712|ref|ZP_07722952.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
 gi|311101572|gb|EFQ59775.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
          Length = 719

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 270/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A +  N +    +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 ENLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ 
Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +    N    LFSP  V      Y
Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312

Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           GK +   +I     E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +
Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRYN 370

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI        LN + E   +     CNLGS N+L    +  F   
Sbjct: 371 PID--GKIVMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425

Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               +I+   R L  V D +    +   K  N      GLG MG  S L   HI Y SPE
Sbjct: 426 --GRSIKAMTRALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736
           +VE  +     +++  +  S  +A+ER   +  F+ S + D   F     G      D +
Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRI 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +     +P    W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  
Sbjct: 544 KELFEGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y   S+ + + IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANSL-STDTIP-----FYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L+L              ++ + + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYIRT 701


>gi|254487728|ref|ZP_05100933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
 gi|214044597|gb|EEB85235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
          Length = 760

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 159/592 (26%), Positives = 255/592 (43%), Gaps = 90/592 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E   E     F+  L  F F+ +      SGT R   L +CF + T+PD +
Sbjct: 37  RIARDLAQTEDAPEVWEETFFEALEDFKFLPAGRITAGSGTARRVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVLGVSADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM  V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMSVLITDPFMDAVKADQSWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+R + A  LW +++   +E   P 
Sbjct: 213 L-----------QFGG------------------KVYRTVQARDLWNRIMKATYEFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +   + ++N C E  L         C LGSIN+    A+       
Sbjct: 244 VIFIDRINAANNLSYCETIAATNPCGEQPL----PPYGACLLGSINMARMVADPFDKTAH 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   + TAVR++DNV+D++   +E  K      R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDVVALDKLVATAVRMMDNVVDVSKFPLEAQKAEAKAKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  ++ I+  A  ASV+LA+E+GA+  F    +                   
Sbjct: 360 SDEAAAQTEAWLKAIARAAYLASVDLAKEKGAFPLFDADAY------------------- 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           LA     ++  ++++  +K  G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LASGTMQQMD-EDVRSEIKEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459

Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           +  D +     +V+   Q  RDL  +A + D   +  ++  ++ +     K+ A A    
Sbjct: 460 LQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAPLDHV-----KMQAAA---- 510

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                      QKW+D + S  +   E  S      +Y  AW  G K  TTY
Sbjct: 511 -----------QKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTY 551


>gi|222831854|gb|EEE70331.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 159/247 (64%), Gaps = 10/247 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++   +
Sbjct: 39  KLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRSRPN 98

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--APKLKI 147
               HIED+QD VE +LM+SG H++ R YVLYRE+R+  R AQ+++++ A +  A     
Sbjct: 99  GGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQER-AQANAQAVARVQEAGVSFN 157

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I ++
Sbjct: 158 VTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAILAA 217

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G++A
Sbjct: 218 RTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGIEA 271

Query: 267 RLLHESM 273
            LL E +
Sbjct: 272 ELLDEKL 278


>gi|126733656|ref|ZP_01749403.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
 gi|126716522|gb|EBA13386.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
          Length = 760

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 167/611 (27%), Positives = 267/611 (43%), Gaps = 93/611 (15%)

Query: 306 FLHINGSRIEMPQA-FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I+   A  + R+A  LA  E +      +FY+ L  F ++ +      +GT 
Sbjct: 19  FKEADGTPIDETVADTWTRIAGALAAVEDDPTAWESKFYDALEDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVMGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I D FM+ V  +  W L           ++G E                  V+R + A
Sbjct: 195 VLITDPFMEAVKADGPWDL-----------IFGGE------------------VYRTVQA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++   ++   P + F D  N  +   +   + ++N C E  L         C L
Sbjct: 226 RELWDAIMRSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSIN+ A    + F      D   L   + TAVR++DNV+D +   +E  +      R I
Sbjct: 282 GSINM-ARLVKDPFEDIAALDEAALTDLVATAVRMMDNVVDASRFPLEAQQAEAKAKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL ++ + Y S EA    D+ M  I+  A  ASV+LA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMVGLRYGSQEAAAQTDKWMHQIARAAYLASVDLAKEKGAFPLFDA--- 397

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +Q +      G+ A+VRD +A +                 G+RN+   +IAPT TI+   
Sbjct: 398 EQFLASGAMQGMDADVRDAIAEH-----------------GIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN 833
           G VS  I+P +   Y +  +  D +     +V+   Q  RDL  +A + D   +  ++  
Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQLWRDLKGDAPLPDYFVNAQTLAP 500

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
           ++ +     ++ A A               QKWID + S  +   E  S      +Y  A
Sbjct: 501 LDHV-----RMQAAA---------------QKWIDSSISKTINCPEDISFDDFKEVYMAA 540

Query: 893 WLMGLK--TTY 901
           W  G K  TTY
Sbjct: 541 WDQGCKGCTTY 551


>gi|168491100|ref|ZP_02715243.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574524|gb|EDT95052.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
          Length = 719

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPG 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 VADWAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKDLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|167856023|ref|ZP_02478768.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219871495|ref|YP_002475870.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis SH0165]
 gi|167852862|gb|EDS24131.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219691699|gb|ACL32922.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parasuis SH0165]
          Length = 569

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 162/588 (27%), Positives = 255/588 (43%), Gaps = 108/588 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY  +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 65  EGYADKFYYYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 124

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 125 IGGGTSAYFGDIRPRGSLIK-NNGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 183

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D++E+LD+       +   + +    +W+  +        AG                
Sbjct: 184 HGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESM-------KAG---------------- 220

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                   + Y+RQ                LW K+L    ETG P++ FKD  N   P  
Sbjct: 221 --------DPYKRQ----------------LWAKILQRKTETGIPYLFFKDNANAGRPDV 256

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      VH+SNLCTEI L S++EE+ VC L S+NLL       FD  K           
Sbjct: 257 YKDKNMTVHASNLCTEIMLPSNNEESFVCCLSSMNLL------YFDEWKDTDAPEVLTYF 310

Query: 632 LDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           LD V+            +++A +    HRA+G+G++G+ S L   +IP+ S EA++  + 
Sbjct: 311 LDVVMSEFIEKSAEIPFLDRANRFAKRHRALGIGVLGWHSYLQANNIPFDSFEAMQKNNI 370

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + +    + AS ELAQ  G     KG                                
Sbjct: 371 IFKTLKEKTMKASEELAQRFGEPELLKG-------------------------------- 398

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G RN+  M+IAPT + + I G VS S++P   N YVK          N 
Sbjct: 399 ----------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNP 448

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL   L+++ L  E +   +  +DGS+ ++ ++ +  K++  T  EI  + +I+ A++RQ
Sbjct: 449 FLEQLLREKGLDTEEIWESILLNDGSVQHLTQLSEHEKEVFKTFSEISQLSVIQQAAQRQ 508

Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           K+IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 509 KYIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 556


>gi|315641367|ref|ZP_07896442.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
 gi|315482860|gb|EFU73381.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
          Length = 719

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 168/654 (25%), Positives = 290/654 (44%), Gaps = 76/654 (11%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F F  ++     Y +Y L  N    E  +++  RVA          E+ A+   + +
Sbjct: 88  EQSFVFHSFMAAYKFYSQYALKTNNGE-EYLESYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNSIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGSPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIMTFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVLVPDKFYELTRKNEEMYLFSPYSVEREYGVPFSYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVTNPRIRK-TKIKARDLENELSKLQQESGYPYIINIDTANRANPVN--GKIIMSNLC 382

Query: 586 TEI------TLNSSSEETAV------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI      +L ++ +E  V      CNLGS N++   ++  F       ++RT  R L 
Sbjct: 383 SEILQVQEPSLINAKQEYDVLGTDISCNLGSTNIVNLMSSPDF-----GKSVRTMTRALT 437

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   +  NH +  IGLG MG  +      + Y SPE++E  D     +++
Sbjct: 438 FVTDASDIDVVPSIQNGNHLNHTIGLGAMGLHTYFAKNQMEYGSPESIEFTDIYFTLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA-MNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    I        A+V++  A +   +   
Sbjct: 498 WTLVESNTIAKERQLVFHNFEKSSYADGSYFDKYIQGNHQPKSAKVKELFAGVFIPTSDD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L   VK  G+ + N +A+AP  +I+ I   S S+ P                     
Sbjct: 558 WQVLADNVKRDGLYHQNRLAVAPNGSISYINDTSASLHP--------------------- 596

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +   +++R    E  I  + Y    + N E I       + +A+++D   +I+  +  Q+
Sbjct: 597 ITRLIEER---QEKKIGKIYYPAAYLSN-ETI-----GYYKSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            IDQ  S+ L+L  D P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HIDQGMSMTLFLRSDMPEGLYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|323341318|ref|ZP_08081562.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
 gi|323091195|gb|EFZ33823.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
          Length = 702

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 157/592 (26%), Positives = 263/592 (44%), Gaps = 76/592 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TP+  N+G  R  +  SCFL    DD+  I   +     L++  GG+G + + +RG
Sbjct: 132 FQPATPSFLNAGRKRRGEFVSCFLLQTTDDMNSIGRMINSALQLSRIGGGVGVNLSNLRG 191

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H DV EFL  +K  
Sbjct: 192 RGASIKQIKGVASGVVPVMKLLEDSFSYSNQLGQRQGAGAVYLNVFHPDVLEFLGTKKEN 251

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LF P  V   +       ++  E YE+  
Sbjct: 252 ADEKIRVKTLSLGLVVPDKFYELARKNEEMCLFEPYTVEKEYHCPFSYVDLTKE-YEKMV 310

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +   I+  +KISA  L  ++  +  E+G+P+I   D  N  +P +  G +  SNLC+EI 
Sbjct: 311 ENPRIEK-KKISARMLEEEISKLQQESGYPYIVNIDTVNAGNPIK--GKIVMSNLCSEIL 367

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N   E   +     CNLGS N+      N         +++T V+ L  V D
Sbjct: 368 QVQEPSVINDEQEYVKLGRDISCNLGSTNIA-----NLMKAPDFGRSVKTMVKALTEVSD 422

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N  ++      N T  AIGLG MG  S L    I Y S EA+E        +++  + 
Sbjct: 423 ESNIKSVPSVAHGNETAHAIGLGAMGLHSFLAQNKIRYGSKEALEFVSTYFMLLNYWTLV 482

Query: 697 ASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLPWDEL 749
           AS E+A E+   +  F  S +  G +       DS    ++ ++    +   S   W  L
Sbjct: 483 ASNEIAIEKKQMFDGFLESGYADGSYFEEYENADSTLHFSKTKELFKGIFIPSAKDWGRL 542

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ V   G+ N N +A+APT +I+ I   + S+ P                     +V  
Sbjct: 543 RQNVMRHGLYNQNRLAVAPTGSISYINDTTASLQP---------------------IVRV 581

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++R    E  I  + Y    +   E +P      + +A+++D   +I++ +  QK +DQ
Sbjct: 582 VEER---QEKKIGKIYYPAPGLSE-ETLP-----YYTSAYDLDMRCVIDTYAAAQKHVDQ 632

Query: 870 AQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++                +E + + L  +   A+   +K+ YY+R+
Sbjct: 633 GLSLTLFMRSKPSADLYEWKKGHKEELTTRDLTILRHYAFRKKIKSIYYVRT 684


>gi|329116333|ref|ZP_08245050.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906738|gb|EGE53652.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 719

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 159/595 (26%), Positives = 266/595 (44%), Gaps = 84/595 (14%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP  V        KE+ I Y   +  A
Sbjct: 271 ADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYSVE-------KEYGIPYNYIDITA 323

Query: 530 DRGEI----KVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              E+    K+ + KI A  L  ++  +  E+G+P+I   D  N  +P    G V  SNL
Sbjct: 324 MYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPVD--GKVIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F      ++I+   R L
Sbjct: 382 CSEILQIQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GASIKAMTRAL 436

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     ++
Sbjct: 437 TFVTDSSQIEAVPTIKNGNQQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP--- 745
           +  +  S  +A+ER   ++ F+ S + D   F     G      D +  + +   +P   
Sbjct: 497 YWTLVESNNIARERQTTFTGFENSKYADGSYFDKYVTGKFVPQTDFVKDLFKDHFIPQAS 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P                    
Sbjct: 557 DWETLRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHP-------------------- 596

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   +++R    E  I  + Y    + + + IP      + +A+++D   +I+  +   
Sbjct: 597 -ITQRIEER---QEKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 QHVDQGLSLTLFLRSELPKELYEWKSESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|331266448|ref|YP_004326078.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
 gi|326683120|emb|CBZ00738.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
          Length = 719

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|239636655|ref|ZP_04677657.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
 gi|239598010|gb|EEQ80505.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
          Length = 701

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 177/684 (25%), Positives = 293/684 (42%), Gaps = 92/684 (13%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
           + E   D DLV +    +Y +   F+   Y+     Y  Y L  N  +  +E        
Sbjct: 69  VFEKYSDSDLVEIT---EYAKSINFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAI 125

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           V+M LA  + ++ K   +F + +    +  +TPT  N+G  R  +L SCFL  V D L  
Sbjct: 126 VSMYLANGDKDQAK---QFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I         L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G
Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F
Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMF 302

Query: 503 SPDEVS----------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +P  V           DL   Y     +A  N E+          +K  A  +   +   
Sbjct: 303 APHTVKQEYGVTLDDIDLEKYYDD--MVANPNVEK----------KKKDAREMLNTIAQT 350

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----C 600
             ++G+P++ FKD  N       +G +  SNLCTEI        +N    E  +     C
Sbjct: 351 QLQSGYPYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISC 410

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N++     N  +  K   ++ T +  L  V D  N       KK+N    ++GLG
Sbjct: 411 NLGSLNIV-----NVMESQKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLG 465

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
           +M     L    I Y S EA + A+     +++++I  S+++A+ERG  Y  F  S +  
Sbjct: 466 VMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMQIAKERGEKYLDFDKSDYAN 525

Query: 719 GVF--PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATI 772
           G +     S     +      + +   +P    W  L+K V+  G+ ++  +AIAPT +I
Sbjct: 526 GKYFEFYTSQEFEPQFEKVRELFKGFEIPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSI 585

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P                     +V+++++R   +      + +      
Sbjct: 586 SYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPMPF------ 618

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
               +  +    + +AF  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  
Sbjct: 619 ----LSPETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVY 674

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           A   GLK+ YY R++   SVE+ T
Sbjct: 675 AHHKGLKSLYYTRNK-LLSVEECT 697


>gi|319947338|ref|ZP_08021571.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
 gi|319746580|gb|EFV98840.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
          Length = 719

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 290/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEDIAKDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E   +     CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSQAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F   + G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYTTGEFVPQSDRVKELFKDIFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|241888655|ref|ZP_04775962.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864678|gb|EER69053.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
          Length = 696

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 165/593 (27%), Positives = 270/593 (45%), Gaps = 79/593 (13%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G 
Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+
Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R   ++T   +P LF     +N  + +F P  + + + L   + +IA + Y+R     
Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDIA-KYYDRFVANE 326

Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            I + RK  A    R ML ++ +T    G+P++ FKD  N     + +G V  SNLCTEI
Sbjct: 327 NI-MKRKFDA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381

Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 +ET+V               CNL S+N++     N  +  K+  +I + +  L 
Sbjct: 382 F---QLQETSVIKDYGEDDIIKRDISCNLASLNIV-----NVMESKKIKESIYSGMDALT 433

Query: 634 NVIDINCHTIEKAK---KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            V   N   I+ A    K+N    ++GLG M     L    I Y S EA + A+     +
Sbjct: 434 FVS--NSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMM 491

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--GLLAEVRDELAMNRTSRLP-- 745
           +++ +  S+++A++R   +  F+ S +  G +    I    L       A+     +P  
Sbjct: 492 NYYTLERSMQIAKDRNETFKDFEKSDYYNGSYFTKYIENDYLPVTEKVKALFEGIYIPTK 551

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P                   
Sbjct: 552 EDWRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLP------------------- 592

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V+++++R   +      + Y          +    +  + +AF +D M LI+  S  
Sbjct: 593 --IVDKIERRSYGNAETFYPMPY----------LSPKTQWFYKSAFTMDQMKLIDLMSVI 640

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q+ +DQ  S+ L+++ + + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 641 QEHVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|227552560|ref|ZP_03982609.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257888212|ref|ZP_05667865.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257896900|ref|ZP_05676553.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|293378469|ref|ZP_06624632.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
 gi|227178309|gb|EEI59281.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257824266|gb|EEV51198.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257833465|gb|EEV59886.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|292642798|gb|EFF60945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
          Length = 719

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 167/657 (25%), Positives = 293/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +R      I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DRLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNTLKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|255264072|ref|ZP_05343414.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
 gi|255106407|gb|EET49081.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
          Length = 757

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 157/593 (26%), Positives = 261/593 (44%), Gaps = 87/593 (14%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + R+A  LA  E        +FYN L  F ++ +      +GT R   L +CF + TVPD
Sbjct: 35  WTRIATSLASVEKTPSDWGEKFYNALEDFKYLPAGRITAGAGTKRSVTLFNCFVMGTVPD 94

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           D+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 95  DMGGIFDHLREAALTMQQGGGIGYDFSTIRPKGAAVKGVAADASGPLSFMDVWDAMCRTI 154

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  
Sbjct: 155 MSAGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNVSVLVTDPFMEAVKADQP 210

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L    +V                              + + AV LW K++   ++   
Sbjct: 211 WDLVFKGQVC-----------------------------KTVQAVDLWNKIMQSTYDYAE 241

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616
           P + F D  N  +   +V  + ++N C E  L         C LGSIN+ +    + F  
Sbjct: 242 PGVIFIDRINKANNLGYVEEIAATNPCGEQPL----PPYGACLLGSINM-SRIVTDPFTD 296

Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D   +   + TAVR++DNV+D +   ++  +      R IGLG+ G   AL ++ +
Sbjct: 297 AAALDEAAMIDLVATAVRMMDNVVDASRFPLDAQRAEAQAKRRIGLGVTGLADALLMVGL 356

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S +A    ++ M  I+  A  ASV+LA+E+GA+  F    + Q     D++      
Sbjct: 357 RYGSEDAARQTEQWMHAIARAAYLASVDLAKEKGAFPLFDADKYLQS----DAM------ 406

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791
              +AM+       D+++  ++T G+RN+   +IAPT TI+   G VS  I+P +   Y 
Sbjct: 407 ---MAMD-------DDVRDAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYT 456

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +  D T     +V+   +  L+ +   +D +  D  +      P D  ++ A A   
Sbjct: 457 RKVLQKDGTRTEEEVVDYAVK--LYRDIHGADAELPDHFVNAQTLAPLDHVRMQAAA--- 511

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                       QKWID + S  +   E  S +    +Y +AW  G K  TTY
Sbjct: 512 ------------QKWIDSSISKTINCPEDISFEDFKEVYMEAWDTGCKGCTTY 552


>gi|126463986|ref|YP_001045099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126105797|gb|ABN78327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 755

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 257/590 (43%), Gaps = 86/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +       FY+ L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+R + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGS+NL    A       +
Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  M+ I+  A  AS +LA+E+GA+  F                   E    
Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           LA    + +  ++++  ++T G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LASGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   +  LW E M           G+   +PD        A    P+
Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
             +   +  QKWID + S  +   E  G ++   +Y  AW  G K  TTY
Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551


>gi|146279531|ref|YP_001169689.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557772|gb|ABP72384.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 753

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 161/591 (27%), Positives = 255/591 (43%), Gaps = 88/591 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E + +     FY  L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARSLAEVEADPQLWEDRFYAALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV++ + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGG------------------KVYKTLEARDLWNRIMRSTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGS+N LA      F    
Sbjct: 244 VIFIDRINRMNNLAYCETIAATNPCGEQPL----PPYGACLLGSVN-LARLVTGAFSDEA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D   L   +R AVR++DNV+D +   + +        R IGLG+ G   AL ++ + Y
Sbjct: 299 RLDLAALDDLVRLAVRMMDNVVDASRFPLPEQANEAQMKRRIGLGVTGLADALLMVGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA E  +  M+ I+  A  ASV+LA+E+GA+  F                   E   
Sbjct: 359 GSEEAAERTEAWMKAIARSAYLASVDLAREKGAFPLF-------------------EAEK 399

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
            LA    + +  +++++ +++ G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 400 YLASGSLTHMD-EDVREAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D T     +V+   +  LW E M  D    D  +      P D  ++ A A     
Sbjct: 459 VLQKDGTRTEEEVVDYAVR--LWREKM-GDAPLPDYFVNAQTLAPLDHVRMQAAA----- 510

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                     QKWID + S  +   E  S      +Y  AW  G K  TTY
Sbjct: 511 ----------QKWIDSSISKTINCPEDISFDDFADVYLAAWDQGCKGCTTY 551


>gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 830

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 160/630 (25%), Positives = 268/630 (42%), Gaps = 93/630 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  ET+       FY  L  F F+ +      +GT R   L +CF + TVPD++
Sbjct: 37  RIARALAAVETDAAVWEDRFYAALEDFRFLPAGRITAGAGTGRRVTLFNCFVMGTVPDNM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIGAKS----DPARLRMFNMSVLVTDAFMEAVKADGSWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                               + KV+  + A  LW +++   ++   P 
Sbjct: 213 LLF-----------------------------DGKVYHTLKARDLWNRIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGS+NL A    + F    
Sbjct: 244 VIFIDRINKANNLAYCETIAATNPCGEQPL----PPYGACLLGSVNL-ARLVTDPFTDAA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D + L   +RTA+R++DN +D +   +E   +     R IGLG+ G   AL +L + Y
Sbjct: 299 RLDPEALDDLVRTAIRMMDNTVDASKFPLEAQAREAEAKRRIGLGVTGLADALLMLGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA    +  M+ I+  A  ASV+LA+E+GA+  F                     RD
Sbjct: 359 GSDEAAAQTEAWMKAIARAAYLASVDLAKEKGAFPLFD--------------------RD 398

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
               + T +   ++++  V   G+RN+   ++APT TI+   G VS  I+P +   Y + 
Sbjct: 399 AYLASGTMQAMDEDVRAAVAEHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYEYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            +  D +     +++   Q  RD+  +A + D   +  ++  +E +     K+ A A   
Sbjct: 459 VLQKDGSRTEEKVIDYAVQMWRDVKGDAPLPDYFVNAQTLAPLEHV-----KMQAAA--- 510

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                       QKW+D + S  +   E  S +    +Y +A+  G K     R    T 
Sbjct: 511 ------------QKWVDSSISKTINCPEDISFEAFKDVYMEAYETGCKGCTTYRPNDVTG 558

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
              S L   + K  A P     S+  ++G+
Sbjct: 559 ---SVLSVSEAKAAATPGERLRSARKAVGL 585


>gi|262283136|ref|ZP_06060903.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
 gi|262261388|gb|EEY80087.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
          Length = 719

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + +    RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESSNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|225868772|ref|YP_002744720.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702048|emb|CAW99656.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 719

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP  V   + L     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARHNDDMYLFSPYSVEKEYGLPFNYIDITSMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPNITKT--KIKARDLETEISKLQQESGYPYVINIDTANRSNPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+   R L  V D
Sbjct: 387 QVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFVTD 441

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLMNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLP----WDEL 749
            S ++A+ER   +  F+ S +  G +    I      + EL  ++ +   +P    W  L
Sbjct: 502 ESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQAADWKAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ V   G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RQAVMIDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   K +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATKHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|322385109|ref|ZP_08058756.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
 gi|321270733|gb|EFX53646.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
          Length = 719

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 179/657 (27%), Positives = 286/657 (43%), Gaps = 84/657 (12%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY---- 522
           K   D++ R   ++    IPD F +   +N    LFSP     +   YG  F  AY    
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEDMYLFSP---YSIEREYGVPF--AYIDIT 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+      +I    KI A  L  ++  +  E+G+P++   D  N  +P    G +  S
Sbjct: 323 EKYDELVANPKITK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMS 379

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI        LN + E   +     CNLGS N++    +  F       +IRT  R
Sbjct: 380 NLCSEILQVQEPSLLNDAQEYIHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTR 434

Query: 631 VLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D +  T +      N      GLG MG  S L    I Y S EAVE        
Sbjct: 435 ALTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332362637|gb|EGJ40435.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK49]
          Length = 719

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 284/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G     +  D     ++   EL   +   S   W
Sbjct: 499 TLVESNNIARERGVTFDNFEKSDYANGTYFDKYLTDEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|77465546|ref|YP_355049.1| ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
 gi|77389964|gb|ABA81148.1| Ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
          Length = 755

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E E       FY+ L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+R + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGS+NL    A       +
Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  M+ I+  A  AS +LA+E+GA+  F                   E    
Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           L     + +  ++++  ++T G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   +  LW E M           G+   +PD        A    P+
Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
             +   +  QKWID + S  +   E  G ++   +Y  AW  G K  TTY
Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551


>gi|329769049|ref|ZP_08260471.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839540|gb|EGF89116.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 696

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 160/591 (27%), Positives = 271/591 (45%), Gaps = 75/591 (12%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G 
Sbjct: 148 ATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGE 207

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+
Sbjct: 208 SIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADE 267

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R   ++T   +P LF     +N  + +F P  + + + L   + ++A   Y  +    
Sbjct: 268 ELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDLA--KYYDEFVVN 325

Query: 533 EIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           E  + RK +A    R ML ++ +T    G+P++ FKD  N     + +G V  SNLCTEI
Sbjct: 326 ENIMKRKYNA----RDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEI 381

Query: 589 TLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 +ET+V               CNL S+N++     N  +  K+  +I + +  L 
Sbjct: 382 F---QLQETSVIKDYGEGDIIKRDISCNLASLNIV-----NVMESKKVKESIYSGMDALT 433

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D           K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSDSTKIKNAPGVVKANEEFHSVGLGAMNLNGYLAKNCIAYDSEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLP 745
           + +  S+++A++RG ++  F+ S +  G +       D +    +V++    +   ++  
Sbjct: 494 YTLERSMQIAKQRGQSFKDFEKSDYYNGSYFAKYIEKDYLPKSDKVKELFEGIYIPTKED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK R+K  G+ ++  MAIAPT +I+ +   + S+ P                     
Sbjct: 554 WHSLKNRIKENGLYHAYRMAIAPTQSISYVQNSTSSVLP--------------------- 592

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +V+++++R   +      + Y          +    +  + +AF +D M LI+  S  Q+
Sbjct: 593 IVDKIERRTYGNAETFYPMPY----------LSPKTQWYYKSAFTMDQMKLIDLMSVIQE 642

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +DQ  S+ LY++ + + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 HVDQGISVILYVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|325697178|gb|EGD39065.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK160]
          Length = 719

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 174/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G +    + G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFAKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|163732870|ref|ZP_02140315.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
 gi|161394230|gb|EDQ18554.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
          Length = 834

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 159/616 (25%), Positives = 268/616 (43%), Gaps = 87/616 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I++  +  + R+A  LA  E   +    +FY+ L  F ++ +      +GT 
Sbjct: 19  FKEADGAPIDVTVEDTWRRIARDLARVEKTPDIWEEQFYSALKDFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAKS----DPARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W L                       ++ Q       V+R + A
Sbjct: 195 VLVTDPFMEAVKADGPWDLV----------------------FDGQ-------VYRTLQA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW +++   ++   P + F D  N  +   +   + ++N C E  L         C L
Sbjct: 226 RDLWNRIMQATYDYAEPGVIFIDRINQANNLNYCETIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSIN+ A   +  F      D   L   + TAVR++DNV+D +   +E   +  H  R I
Sbjct: 282 GSINM-ARLVSAPFEEAAKLDEVALNDLVATAVRMMDNVVDASKFPLEAQAREAHAKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL ++ + Y S EA    D  +  I+  A  ASV+LA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMVGLRYGSDEAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA--- 397

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                            D+   + T +   +++++ V+  G+RN+   +IAPT TI+   
Sbjct: 398 -----------------DKYLASGTMQAMDEDVREAVREHGIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           G VS  I+P +   Y +  +  D +     +V+   Q  +W E      K+ D      +
Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRE------KFGD------K 486

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWL 894
            +PD        A  + P+  ++  +  QKW+D + S  +   E  G      +Y +AW 
Sbjct: 487 ELPD----YFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYMEAWD 542

Query: 895 MGLKTTYYLRSRSATS 910
            G K     R  + T 
Sbjct: 543 SGCKGCTTYRPNAVTG 558


>gi|225351963|ref|ZP_03742986.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157210|gb|EEG70549.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 727

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 161/605 (26%), Positives = 259/605 (42%), Gaps = 90/605 (14%)

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           ++  L S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+
Sbjct: 156 YFEELISGRFQPATPTFLNLGKAQRGEAVSCFLVRIEDNMESISRGINAALQLSKRGGGV 215

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               + +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 216 ALLLSNLREAGAPIKRIKHQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIM 275

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   +     IPD+  +   ++    LFSP    D+  + G+ F  
Sbjct: 276 HFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHEPMALFSP---YDVERVMGRPFAD 332

Query: 521 A--YENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
               ENY    D   I K +  I A   +  +  + FE+G+P++ F+D  N  +P    G
Sbjct: 333 VSISENYRNMVDDERIGKTY--IDAREFFMTLAELQFESGYPYMVFEDTVNRANPID--G 388

Query: 578 VVHSSNLCTEI-------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            +  SNLC+EI             + N    + + CNLGS+N+      +      L  T
Sbjct: 389 RIAMSNLCSEILQVQEPSTYHEDLSYNHVGRDVS-CNLGSLNIAKAMDGD------LGRT 441

Query: 625 IRTAVRVLDNV---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           +  A+R L +V    DI C  +   +++N    AIGLG M     L    I Y SPEA++
Sbjct: 442 VERAIRALTSVSEHTDIAC--VPSIRRANDEGHAIGLGQMNLHGFLARESIMYGSPEALD 499

Query: 682 IADESMEFISFHAISASVELAQERGA-YSSFK----------GSLWDQGVFPIDSIGLLA 730
             D     +++HA  AS ELA ERG  ++ F+          G+ +D+      S+    
Sbjct: 500 FTDMYFMTVAYHAYRASHELAVERGTRFAGFERSAYAKPAGAGNYFDKYTNGERSLAPKT 559

Query: 731 EVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                L   R   +P    W  L+  +   G+ N    A+ PT +I+ I   + SI P  
Sbjct: 560 GKIASLFARRGIHIPNEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISYINHSTSSIHPIA 619

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842
             + ++                                   +G IG I      + +D  
Sbjct: 620 SKIEIRK----------------------------------EGKIGRIYYPAPYMTNDNL 645

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
           +  A A+EI    ++++ +   + +DQ  SL L+  D  + + L+     AW  G+KT Y
Sbjct: 646 QYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLY 705

Query: 902 YLRSR 906
           Y+R R
Sbjct: 706 YIRIR 710


>gi|119897702|ref|YP_932915.1| putative ribonucleoside reductase [Azoarcus sp. BH72]
 gi|119670115|emb|CAL94028.1| conserved hypothetical ribonucleoside reductase [Azoarcus sp. BH72]
          Length = 958

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 166/592 (28%), Positives = 256/592 (43%), Gaps = 84/592 (14%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +        GI+ AL + A   +  GG+G D++ +R  GA + GT   
Sbjct: 91  LINCFVQPVGDSVTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGAMVRGTASN 150

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + +++V + +   V   G R+GA    L   H D+EEF+   K+ GD      + N
Sbjct: 151 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDHGD----LTNFN 205

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +    L    E SD     G         Y+R   R    V+RK+
Sbjct: 206 ISVGVTDDFMRAVESDGDIELTHKSEPSDELKAAGA--------YQRDDGR---WVYRKV 254

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A ALW +++   ++   P I F D  N  +   +   + ++N C E  L         C
Sbjct: 255 PARALWDQVMRSTYDHAEPGILFLDRMNQDNNLYYCETIEATNPCAEQPL----PPYGCC 310

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGS+NL     N      +FDY      +  ++R+LDNV+D     +E+ ++   + R 
Sbjct: 311 CLGSVNLTPFVKNPFTDKAEFDYAAFGKVVDVSIRMLDNVLDATHWPLEQQQREADSKRR 370

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G   AL +L   Y S EA E A +  E++   A  AS ELA+ERGA+  F   +
Sbjct: 371 VGLGFTGLGDALIMLGKRYDSDEAREEARKISEYMRNRAYLASTELAKERGAFPLFNADM 430

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
           +  G                   N  SRLP  E+K +++  G+RNS+ ++IAPT TI  A
Sbjct: 431 YLSG------------------GNFASRLP-AEVKDKIRKHGIRNSHLLSIAPTGTISLA 471

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P +   Y +     D T    + V +   R          L  H G  GN
Sbjct: 472 FADNASNGIEPPFSYTYTRRKRMADGT-FKEYAVEDYAWR----------LYKHLG--GN 518

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           +E++P        TA EI      +  +    +ID   ++++N+  D P     D +Y  
Sbjct: 519 VEQLP----SYFVTALEISAQAHKDMVAAVAPYIDTSISKTVNVPEDYPYADFED-LYLT 573

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           AW  GLK     R  S           V G + +V  T      H + IP +
Sbjct: 574 AWKAGLKGLATYRPNS-----------VLGSVLSVAPTSEQKQPHDVEIPDA 614


>gi|290580849|ref|YP_003485241.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
 gi|254997748|dbj|BAH88349.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
          Length = 719

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 265/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  +  E  A
Sbjct: 271 ADEKVRVKTLSLGITIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDITEKYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +   IK   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKIIKT--KIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N++    +  F       +I+   R L  V D
Sbjct: 387 QVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVTD 441

Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLV 501

Query: 697 ASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G  F     G      D++  + +   +P    W+ L
Sbjct: 502 ESNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKVKELFKNHFIPQAEDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ V   G+ + N +A+AP  +I+ I  VS SI P                     +   
Sbjct: 562 RQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHP---------------------ITRR 600

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++R    E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 601 IEER---QEKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 652 GMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|24379141|ref|NP_721096.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           mutans UA159]
 gi|24377046|gb|AAN58402.1|AE014910_6 ribonucleotide reductase, large subunit [Streptococcus mutans
           UA159]
          Length = 719

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 265/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  +  E  A
Sbjct: 271 ADEKVRVKTLSLGVTIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDITEKYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +   IK   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKIIKT--KIKARDLETEISKLQQESGYPYVVNIDTANRANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N++    +  F       +I+   R L  V D
Sbjct: 387 QVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVTD 441

Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLV 501

Query: 697 ASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDELA-MNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S + D   F     G      D++  + +   +P    W+ L
Sbjct: 502 ESNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKIKELFKNHFIPQAEDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ V   G+ + N +A+AP  +I+ I  VS SI P                     +   
Sbjct: 562 RQAVIKDGLYHQNRLAVAPNGSISYINDVSASIHP---------------------ITRR 600

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++R    E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 601 IEER---QEKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 652 GMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|327458664|gb|EGF05012.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1057]
 gi|332363058|gb|EGJ40845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK355]
          Length = 719

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|66394955|ref|YP_240947.1| ORF006 [Staphylococcus phage G1]
 gi|62636977|gb|AAX92088.1| ORF006 [Staphylococcus phage G1]
          Length = 704

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 167/592 (28%), Positives = 263/592 (44%), Gaps = 66/592 (11%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  STPT  NSG     +LSSC+L  V D +  +       A  +   GG+  D T +R 
Sbjct: 149 FQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNGGGVAIDLTRIRP 208

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +      S+GVI F K         +QGG R+G+   YL  +H D+ + L  +K  
Sbjct: 209 KGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHNDILDLLSSKKIN 268

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             +  R   ++    IP+ FM+ V +   +  F   +++ ++  Y  E  I  E Y++  
Sbjct: 269 ASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKVYGKYLDELNID-EWYDKLL 327

Query: 530 DRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           D   I KV  K  A  +   +     E+G+P++ + D  N   P +++G V  SNLCTEI
Sbjct: 328 DNDSIGKV--KHDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLGKVKMSNLCTEI 385

Query: 589 T-LNSSSE-------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           + L   SE                VC LGS+NL+     N  +   L  ++    R L  
Sbjct: 386 SQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLV-----NVVEKGLLNESVDIGTRALTK 440

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V DI +   +   +K+N   RAIGLG M     L    I Y S EA+++ +     I+F 
Sbjct: 441 VTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDLVNSLYSAINFQ 500

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PW 746
           +I  S+ +A+E G  +  F+ S +  G + +  I    + + + A    +++       W
Sbjct: 501 SIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVLNKVYIPTQDDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           DEL K VK  G+ N    A APT +I+ +   + SI P      +++   GD        
Sbjct: 561 DELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSA--IENRQYGDMET----- 613

Query: 807 VNELKQRDLWDEAMISDLK--YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                    +    +S +   +++G                 TA++ID   +I +++  Q
Sbjct: 614 --------YYPMPYLSPITQFFYEGE----------------TAYKIDNKRIINTSAVVQ 649

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           K  DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E  T
Sbjct: 650 KHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECET 701


>gi|157150204|ref|YP_001450837.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074998|gb|ABV09681.1| ribonucleoside-diphosphate reductase large chain [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 719

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + +    RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYASGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|325688331|gb|EGD30350.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK72]
          Length = 719

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|119383702|ref|YP_914758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
 gi|119373469|gb|ABL69062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
          Length = 754

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 172/645 (26%), Positives = 277/645 (42%), Gaps = 101/645 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           RVA  LA  E +       FY  L  F F+ +   L  +GT R   L +CF + T+PD +
Sbjct: 37  RVARDLARVEKDPALWEDRFYAALEDFKFLPAGRILAGAGTGREVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ ++    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFIEAKQ----DSARLRMFNLSVLVTDAFMEAVKADGPWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+  + A  LW +++   ++   P 
Sbjct: 213 L-----------QFGG------------------KVYHTVRARDLWNRIMRATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHF-ANNQ 615
           + F D  N ++   +   V ++N C E  L         C LGS+NL     A F A+ +
Sbjct: 244 VIFIDRINQQNNLNYAETVAATNPCGEQPL----PPYGACLLGSVNLARLVEAPFTAHAR 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            + + L   +RTAVR++DNV+D +   + +        R IGLG+ G   AL +L + Y 
Sbjct: 300 LNPEALDELVRTAVRMMDNVVDASKFPLPQQSAEAQAKRRIGLGVTGLADALLMLGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           + +AVE     M+ I+  A  ASV+LA+E+GA+  F                   + +  
Sbjct: 360 AADAVEQTRVWMKAIARSAYLASVDLAREKGAFPLF-------------------DAKKY 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           LA     R+  D L++ V   G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LASGFMRRMDAD-LREAVARHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459

Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           +  D +     +V+   Q  RDL  +A + D   +  ++      P D   + A A    
Sbjct: 460 LQKDGSRTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLA-----PLDHVAMQAAA---- 510

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT-- 909
                      Q+W+D + S  +   E  S +    +Y  AW  G K     R    T  
Sbjct: 511 -----------QEWVDSSISKTINCPEDISFEDFKDVYLAAWDKGCKGCTTYRPNEVTGS 559

Query: 910 --SVEKSTLKG--VDGKLNAVPVTDP-------NSSTHSLGIPSS 943
             SV + T +    D   + V +T+P         +T+ L  P S
Sbjct: 560 VLSVSEKTEEAPQADKGADVVYLTEPLDRPAALEGATYKLKFPGS 604


>gi|315613101|ref|ZP_07888011.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
 gi|315314663|gb|EFU62705.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
          Length = 719

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 175/660 (26%), Positives = 291/660 (44%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  + +F+      GS +D+   G F   S  +    +D    +
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 555 ATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + + IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332361650|gb|EGJ39454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1056]
          Length = 719

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSSEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 VELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|254459677|ref|ZP_05073093.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2083]
 gi|206676266|gb|EDZ40753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 762

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 264/595 (44%), Gaps = 92/595 (15%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           ++R+A  LA  E + E    +FY  L  F ++ +      +GT R+  L +CF +  +PD
Sbjct: 35  WVRIAKDLAKVEKDPEHWEEQFYAALEDFKYLPAGRITAGAGTARNVTLFNCFVMGAIPD 94

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 95  SMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVAADASGPLSFMDVWDAMCRTI 154

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H D+E+F+  +     D  R    N +  I D FM+ V  +A 
Sbjct: 155 MSAGSRRGAMMATMRCDHPDIEDFITAKS----DAARLRMFNVSVLITDPFMEAVKADAE 210

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L               EF+            GE  V+R + A+ LW K++   ++   
Sbjct: 211 WDL---------------EFD------------GE--VYRTVRALELWNKIMQGTYDYAE 241

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F D  N  +   +   + ++N C E  L         C LGSIN LA    N F+ 
Sbjct: 242 PGVIFIDRINKANNLGYCETIAATNPCGEQPL----PPYGACLLGSIN-LARLVPNPFEV 296

Query: 619 D------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           D       L   + TAVR++DNV+D +   ++   +     R IGLG+ G   AL ++  
Sbjct: 297 DAALDVSALNELVATAVRMMDNVVDASKFPLDAQAREAAAKRRIGLGVTGLADALLMVGQ 356

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S EA    D+ +  I+  A  ASV+LA+E+GA+  F            D+   LA  
Sbjct: 357 RYGSEEAARQTDQWLHAIARAAYLASVDLAKEKGAFPLF------------DADAFLAS- 403

Query: 733 RDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790
                    + L  DE ++  ++  G+RN+   +IAPT TI+   G VS  I+P +   Y
Sbjct: 404 --------GAMLDMDEDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +  D +     +V+   Q  +W +      K+ D      + +PD        A  
Sbjct: 456 SRKVLQKDGSRTEEEVVDYAVQ--MWRD------KFGD------KELPDYFVNAQTLA-- 499

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK--TTY 901
             P+  +   +  QKW+D + S  +   E      DF  +Y +AW  G K  TTY
Sbjct: 500 --PLDHVRMQAAAQKWVDSSISKTINCPEDIAFD-DFKEVYMEAWDSGCKGCTTY 551


>gi|194014861|ref|ZP_03053478.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194013887|gb|EDW23452.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 700

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 172/672 (25%), Positives = 293/672 (43%), Gaps = 85/672 (12%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRV 324
           L   SM D   V+ A    Y + F F  ++     Y+ Y L  N  +  +E  +     V
Sbjct: 69  LRQYSMADIKEVFEA---AYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISVV 125

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGI 383
           A+  A  + EK   A+EF  L+ +  +  STPT  N+G  R  +L SCFL  V D L  I
Sbjct: 126 ALFFAGGDKEK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDI 182

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G+
Sbjct: 183 SRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQ 242

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++     F 
Sbjct: 243 RQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYTFY 302

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P  V   +  +  E ++  E Y+   +  +IK   K++   L  K+  +  E+G+P+I F
Sbjct: 303 PHTVYKEYGQHLDEMDME-EMYDELVENPKIKK-EKVNPRKLLEKLAVLRSESGYPYIMF 360

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHF 611
           +D  N      H+  V  SNLC+E+   S     A             CNLGS+N++   
Sbjct: 361 QDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMNVM 420

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            N       +  T++ A   L  V +  +       +K+N   ++IGLG M     L   
Sbjct: 421 KNKS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLAQN 475

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL 729
            + Y S EA + A+     +++++I  S ELA+E+G  +  ++GS +  G +    +   
Sbjct: 476 QMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVEND 535

Query: 730 AEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              + E A      M+  ++  W  LK  V   GM +S  + IAPT +I+ +   + S+ 
Sbjct: 536 FTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATASVM 595

Query: 784 P--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           P        +Y N      M G  +  N F   E                          
Sbjct: 596 PIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------------------- 628

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                       A+++D   +++  +  Q+ +DQ  S  L+L D  + + L+ I   A  
Sbjct: 629 ------------AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHH 676

Query: 895 MGLKTTYYLRSR 906
            G+KT YY R++
Sbjct: 677 KGIKTLYYARTK 688


>gi|330683859|gb|EGG95633.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU121]
          Length = 701

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 176/678 (25%), Positives = 291/678 (42%), Gaps = 92/678 (13%)

Query: 275 DFDLVYLANDLKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
           D DLV +    +Y +   F+   Y+     Y  Y L  N  +  +E        V+M LA
Sbjct: 75  DSDLVEIT---EYAKSINFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAIVSMYLA 131

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQ 388
             + ++ K   +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 132 NGDKDQAK---QFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAG 248

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 308

Query: 509 ----------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                     DL   Y     +A  N E+          +K  A  +   +     ++G+
Sbjct: 309 QEYGVTLDDIDLEKYYDD--MVANPNVEK----------KKKDAREMLNTIAQTQLQSGY 356

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSIN 606
           P++ FKD  N       +G +  SNLCTEI        +N    E  +     CNLGS+N
Sbjct: 357 PYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLN 416

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           ++     N  +  K   ++ T +  L  V D  N       KK+N    ++GLG+M    
Sbjct: 417 IV-----NVMESQKFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHG 471

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--P 722
            L    I Y S EA + A+     +++++I  S+++A+ERG  Y  F  S +  G +   
Sbjct: 472 YLAKNKIGYESEEAKDFANIFFMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEF 531

Query: 723 IDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             S     +      + +   +P    W  L+K V+  G+ ++  +AIAPT +I+ +   
Sbjct: 532 YTSQEFEPQFEKVRELFKGFEIPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNA 591

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + S+ P                     +V+++++R   +      + +          + 
Sbjct: 592 TSSVMP---------------------IVDQIERRTYGNAETFYPMPF----------LS 620

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
            +    + +AF  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GL
Sbjct: 621 PETMWYYKSAFNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGL 680

Query: 898 KTTYYLRSRSATSVEKST 915
           K+ YY R++   SVE+ T
Sbjct: 681 KSLYYTRNK-LLSVEECT 697


>gi|332365966|gb|EGJ43722.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1059]
          Length = 719

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGGTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|328945481|gb|EGG39632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1087]
          Length = 719

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFVPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|223932818|ref|ZP_03624815.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|330833007|ref|YP_004401832.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           suis ST3]
 gi|223898527|gb|EEF64891.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|329307230|gb|AEB81646.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis ST3]
          Length = 719

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 169/654 (25%), Positives = 289/654 (44%), Gaps = 76/654 (11%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E+ A+   N +
Sbjct: 88  DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGNEELALNLANEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPRIRK-TKIKARDLETEISKLQQESGYPYVINIDTANRSNPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N S E   +     CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDF-----GRSVRTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   +  N    +IGLG MG  S L    I Y S  AVE  +     +++
Sbjct: 438 YVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNY 497

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF----PIDSIGLLAEVRDEL--AMNRTSRLP 745
             +  S  +A+ER A + +F+ S +  G +            +E   EL   +   S   
Sbjct: 498 WTLVESNNIARERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +L+++VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                
Sbjct: 558 WADLREKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------------- 601

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
              E +Q     E  I  + Y    +   E IP      + +A+++D   +I+  +   +
Sbjct: 602 ---EERQ-----EKKIGKIYYPAAGLAT-ETIP-----FYKSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|332686051|ref|YP_004455825.1| ribonucleotide reductase of class Ib (aerobic), subunit alpha
           [Melissococcus plutonius ATCC 35311]
 gi|332370060|dbj|BAK21016.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 720

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 169/664 (25%), Positives = 294/664 (44%), Gaps = 80/664 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F F+ ++     Y +Y L  N   + + +++  RVA          E+ A+   + +
Sbjct: 88  EQKFQFQSFMAAYKFYSQYALKTNDGTMYL-ESYEDRVAFNALYFADGNEELAITLADEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGKKRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  
Sbjct: 207 NLREASAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIERFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD F +    N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGILIPDKFYELTCNNEEMYLFSPYSVEKEYGIPFSYVDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I  + KI+A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DQLVENPKIHKY-KINARELENEISKLQQESGYPYVINIDTANKNNPVD--GKIVMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        LN   E     E   CNLGS N++    +  F     A T R    + D
Sbjct: 383 SEILQVQTPSILNDKQEYEVLGEDISCNLGSTNIVNLMESPDFGKSVCAMT-RALTYITD 441

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           +       +I+   + NHT   IGLG MG  + L    I Y S E++E        +++ 
Sbjct: 442 SSFIEVVPSIQNGNQHNHT---IGLGAMGLHTFLAKNQITYGSKESIEFTTIYFMLLNYW 498

Query: 694 AISASVELAQERGA------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-- 745
            +  S ++A+ER        YS +    +       D +   A+++    + +   +P  
Sbjct: 499 TLVESNKIAKERQQVFHRFEYSDYADGSYFSKYLTGDFLPKSAKIK---GLFKDIFIPAV 555

Query: 746 --WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +L+  V+  G+ + N +A+AP  +I+ I   S S+ P  Q                
Sbjct: 556 EDWQQLRDAVQKDGLYHQNRLAVAPNGSISYINDTSASLHPITQ---------------- 599

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L+ E +++          + Y   S+ N   IP      + +A+++D   +I+  +  
Sbjct: 600 --LIEERQEKK------TGKIYYPAPSLSNT-TIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           Q+ IDQ  SL L++  + P G            + L  +   A+  G+K+ YY+R+ +  
Sbjct: 646 QQHIDQGMSLTLFMRSEIPEGLYEWKKTTKQTTRDLTILRHYAFNKGIKSIYYVRTFTED 705

Query: 910 SVEK 913
           S E+
Sbjct: 706 SGEE 709


>gi|323352632|ref|ZP_08087602.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
 gi|322121668|gb|EFX93414.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
          Length = 719

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELAHKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIIMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +     ++   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFASIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|315223182|ref|ZP_07865043.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
 gi|315187614|gb|EFU21368.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
          Length = 719

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 182/662 (27%), Positives = 287/662 (43%), Gaps = 90/662 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +E+DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N 
Sbjct: 87  HEQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522
            +K   D++ R   ++    IPD F +   +N    LFSP     +   YG  F  AY  
Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSP---YSIEREYGVPF--AYID 320

Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y       +I    KI A  L  ++  +  E+G+P++   D  N  +P    G + 
Sbjct: 321 ITEKYNELVANPKISK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKII 377

Query: 581 SSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI        LN + E   +     CNLGS N++    +  F       +IRT 
Sbjct: 378 MSNLCSEILQVQEPSLLNDAQEFVRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTM 432

Query: 629 VRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            R L  V D +      TI+      HT    GLG MG  S L    I Y S E+VE   
Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTS 489

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV-FPIDSIGLLAEVRDELAMNRT- 741
                +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +    T 
Sbjct: 490 IYFMLMNYWTLVESNNIARERGMTFHNFEKSDYANGTYFDKYLTGEFVPQSDRVKELFTG 549

Query: 742 ----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               S   W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +        
Sbjct: 550 IFIPSAEDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------- 601

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                      E +Q     E  I  + Y    + + E IP      + +A+++D   +I
Sbjct: 602 -----------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVI 639

Query: 858 ESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYL 903
           +  +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+
Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTECKQTTRDLSILRNYAFNKGIKSIYYV 699

Query: 904 RS 905
           R+
Sbjct: 700 RT 701


>gi|125717618|ref|YP_001034751.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK36]
 gi|125497535|gb|ABN44201.1| Ribonucleoside-diphosphate reductase, putative [Streptococcus
           sanguinis SK36]
          Length = 719

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSPEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332292140|ref|YP_004430749.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170226|gb|AEE19481.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 596

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 160/596 (26%), Positives = 253/596 (42%), Gaps = 128/596 (21%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  +S   F  ++P   N G       SCF + + DD+  I     E  M++K  GG 
Sbjct: 86  KFYGYMSEGFFSLASPVWSNFGKERGLPISCFGSHISDDMGNILYTQSEVGMMSKLGGGT 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA +   NG++ G +  +++       V+QG  R+G    YL   H D+E
Sbjct: 146 SGYFGKIRPRGADVK-NNGQASGSVHIMQLFESMVDVVSQGSVRRGRFSPYLPIEHADIE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EFL +       +  TH +   N W+ ++                               
Sbjct: 205 EFLKIGTEGNSIQELTHGVTVTNEWMEEM------------------------------- 233

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574
           IA ++ +R                +LW K+L    E G+P+I F D  N     +     
Sbjct: 234 IAGDSAKR----------------SLWAKVLQSRGEMGYPYIFFTDNANNGAADVYKDND 277

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632
           H   +++SNLCTEI L S+ + + VC L S+N+L         YDK  +T  + T V  L
Sbjct: 278 HK--IYASNLCTEIMLPSNDDWSFVCVLSSVNVL--------HYDKWKNTDAVETMVYFL 327

Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674
           D VI      +E+ + S+                    +R++GLG++G+ S L    +P+
Sbjct: 328 DAVITEFLEKLERYRDSDSREDRQTFLFMERAYNFAKANRSLGLGVLGWHSLLQSRMLPF 387

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  E  + I   +  AS ELA+  G     KG                     
Sbjct: 388 NSQEAYNLNSEIFKAIKDKSYEASEELAKTFGEPEVLKG--------------------- 426

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                                 G RN+   A+APT + A I G VSQ I+P + N+YVK 
Sbjct: 427 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 465

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                 T+ N FL   L+++ +    +   ++  DGS+ ++E + ++ K    T  EID 
Sbjct: 466 IAKIKTTIKNPFLEELLEEKGMNTTEVWRSIRDMDGSVQHLEFLSENEKDTFKTYSEIDQ 525

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           M +I  A+ RQ  IDQ QS+N+ +  E   K+++ I+  AW +GLK+ YY  S +A
Sbjct: 526 MDIIYQAANRQNHIDQGQSVNIIVHPEMPVKEINKIHVTAWKLGLKSLYYQHSMNA 581


>gi|270292679|ref|ZP_06198890.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
 gi|270278658|gb|EFA24504.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
          Length = 719

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 175/660 (26%), Positives = 289/660 (43%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 EELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y SPE++E        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  +  F+      GS +D+   G F   S  +    +D     
Sbjct: 495 MNYWTLVESNNIARERGITFHKFEKSDYANGSYFDKYVTGEFIPKSDRVKELFKDVFI-- 552

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 553 -PSAADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + + IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|327468919|gb|EGF14391.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK330]
          Length = 719

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|212716022|ref|ZP_03324150.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661389|gb|EEB21964.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
          Length = 698

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 165/615 (26%), Positives = 264/615 (42%), Gaps = 94/615 (15%)

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           ++  L S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+
Sbjct: 127 YFEELVSGRFQPATPTFLNLGKAQRGEAVSCFLIRIEDNMESISRGINAALQLSKRGGGV 186

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               + +R  GA I     +S G++P +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 187 ALLLSNLREAGAPIKRIKHQSSGIVPVMKLLEDSFSYANQLGARQGAGAVYLSAHHPDIM 246

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   +     IPD+  +   ++    LFSP    D+  + G+ F  
Sbjct: 247 HFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHERMALFSP---YDVERVMGRPFAD 303

Query: 521 A--YENYERQADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
               ENY    D   I K +  I A   +  +  + FE+G+P++ F+D  N  +P    G
Sbjct: 304 VSISENYRNMVDDERIGKTY--IDAREFFMTLAELQFESGYPYMVFEDTVNRANPID--G 359

Query: 578 VVHSSNLCTEITLNSSSEET-------------AVCNLGSINLLAHFANNQFDYDKLAST 624
            +  SNLC+EI L      T               CNLGS+N+      +      L  T
Sbjct: 360 RIAMSNLCSEI-LQVQEPSTYHEDLSYDHVGRDVSCNLGSLNIAKAMDGD------LGRT 412

Query: 625 IRTAVRVLDNV---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           +  A+R L +V    DI C  +   +++N    AIGLG M     L    I Y SPEA++
Sbjct: 413 VERAIRALTSVSERTDIAC--VPSIRRANDEGHAIGLGQMNLHGFLARESIMYGSPEALD 470

Query: 682 IADESMEFISFHAISASVELAQERG---------AYS--SFKGSLWDQ---GVFPI-DSI 726
             D     +++HA  AS ELA ERG         AY+  +  G+ +D+   G  P+    
Sbjct: 471 FTDMYFMTVAYHAYRASHELAVERGTRFVGFERSAYAKPTGAGNYFDKYTNGERPLAPKT 530

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G +A +     ++      W  L+  +   G+ N    A+ PT +I+ I   + SI P  
Sbjct: 531 GKVASLFARRGIHIPDEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISYINHSTSSIHPIA 590

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI----ERIPDDLK 842
             + ++                                   +G IG I      + +D  
Sbjct: 591 SKIEIRK----------------------------------EGKIGRIYYPAPYMTNDNL 616

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
           +  A A+EI    ++++ +   + +DQ  SL L+  D  + + L+     AW  G+KT Y
Sbjct: 617 QYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLY 676

Query: 902 YLRSR----SATSVE 912
           Y+R R    S T V+
Sbjct: 677 YIRIRQQALSGTEVQ 691


>gi|324993304|gb|EGC25224.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK405]
 gi|324995392|gb|EGC27304.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK678]
 gi|327461575|gb|EGF07906.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1]
 gi|327473299|gb|EGF18719.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK408]
          Length = 719

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 282/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|221369551|ref|YP_002520647.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
 gi|221162603|gb|ACM03574.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
          Length = 755

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 257/590 (43%), Gaps = 86/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +       FY+ L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+R + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGS+NL    A       +
Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  M+ I+  A  AS +LA+E+GA+  F                   E    
Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           LA    + +  ++++  +++ G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LASGSLTHMD-EDVRAAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   +  LW E M           G+   +PD        A    P+
Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
             +   +  QKWID + S  +   E  G ++   +Y  AW  G K  TTY
Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551


>gi|222153354|ref|YP_002562531.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           uberis 0140J]
 gi|222114167|emb|CAR42680.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus uberis 0140J]
          Length = 719

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 161/600 (26%), Positives = 269/600 (44%), Gaps = 92/600 (15%)

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522
             D++ R   ++    +PD F +   QN    LFSP +V        +E+ +A+      
Sbjct: 270 NADEKVRVKTLSLGLTVPDKFYELARQNEDMYLFSPYDVE-------REYGVAFNYIDIT 322

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+      +I    KI A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 323 EKYDELVANPKITK-TKIRARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMS 379

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI        +N + E   +     CNLGS N+L    +  F       +I+   R
Sbjct: 380 NLCSEILQVQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTR 434

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     
Sbjct: 435 ALTFVTDSSQIEAVPTVKNGNQQAHTFGLGAMGLHSFLAKNHIEYGSPESVEFTDIYFML 494

Query: 690 ISFHAISASVELAQER-GAYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ER   +  F+      GS +D+   G F +    L+ E+  +  + 
Sbjct: 495 MNYWTLVESNNIARERQTTFVGFEKSKYADGSYFDKYVTGQF-VPKSDLVKELFKDHFIP 553

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           + S   W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +          
Sbjct: 554 QAS--DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + + IP      + +A+++D   +I+ 
Sbjct: 602 ---------EGRQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATQHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|149369594|ref|ZP_01889446.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
 gi|149357021|gb|EDM45576.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
          Length = 596

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 162/597 (27%), Positives = 252/597 (42%), Gaps = 126/597 (21%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A +FY  +S   +  ++P   N G +     SCF + + DD+  I     E  M++K  G
Sbjct: 84  ADKFYGYMSEGFYSLASPVWSNFGKKRGLPISCFGSHIDDDIGNILYTQSEVGMMSKLGG 143

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  GA I   NG++ G +  +++       V+QG  R+G    YL   H D
Sbjct: 144 GTSGFFGKIRPRGAAIT-NNGEASGAVHIMRLFESMVDVVSQGSVRRGRFSPYLPIDHAD 202

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           ++EFL++       +  TH +   N W+ ++                             
Sbjct: 203 IKEFLEIGSEGNPIQELTHGVTVTNEWMEEM----------------------------- 233

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQ 574
             IA +  +R                 +W K+L    E G+P++ F D  N  +    Q 
Sbjct: 234 --IAGDEEKR----------------TIWAKVLQSRGEMGYPYVFFTDNANNGAADVYQD 275

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632
               +H+SNLCTEI L S    + VC L SIN+L         YDK   T  + T V  L
Sbjct: 276 KNHKIHASNLCTEIMLPSDHNWSFVCVLSSINVL--------HYDKWKDTDAVETMVYFL 327

Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674
           D VI      +E  K S                     +RA+GLG++G+ S L      +
Sbjct: 328 DAVITEFLEKLESYKNSEDREDRQTFLFMERAYNFAKENRALGLGVLGWHSLLQSKKHAF 387

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  E  + I   +  AS ELA+  G     KG                     
Sbjct: 388 NSQEAFNLNSEIFKIIKDKSYKASEELAKAFGEPEVLKG--------------------- 426

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                                 G RN+   A+APT + A I G VSQ I+P + N+YVK 
Sbjct: 427 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 465

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                 T+ N FLV  L+++ +    +  D++  DGS+ +++ + ++ K +  T  EID 
Sbjct: 466 IAKIKTTIKNPFLVELLQEKGMDTREVWLDIRDKDGSVQHLDFLTENEKDVFKTYSEIDQ 525

Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           M +I  A+ RQ  IDQ QS+N+ +  D P+ K+++ ++  AW +GLK+ YY  S +A
Sbjct: 526 MDIIYQAANRQNHIDQGQSVNIIVHPDMPT-KEVNKLHITAWKLGLKSLYYQHSMNA 581


>gi|171779599|ref|ZP_02920555.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281701|gb|EDT47135.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 719

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 267/590 (45%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +  SCFL +V DD+  I  ++     L++  GG+G + + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISVTDDMNAIGRSINSALQLSRIGGGVGINLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E Y++  
Sbjct: 271 ADEKVRVKTLSLGITIPDKFYELARKNEDMYLFSPYSVEREYGVPYSYVDITAE-YDKMV 329

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
               I V  KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+E+ 
Sbjct: 330 ANPNI-VKTKIKARDLETEISKLQQESGYPYVINIDTANRTNPID--GKIIMSNLCSEVL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N++    +  F       +I+   R L  V D
Sbjct: 387 QVQKPSIINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +   ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++  + 
Sbjct: 442 TSSIESVPTIKHGNEQAHTFGLGAMGLHTYLAQNHIHYGSPESIEFTNIYFMLLNYWTLV 501

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDEL 749
            S ++A+ER   +  F+ S +  G +       D +     V++  A +   S   W EL
Sbjct: 502 ESNQIARERKQTFVGFEKSKYADGSYFDKYITGDFVPKSDRVKELFAEHFIPSGKDWAEL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V   G+ + N +A+AP  +I+ I  VS S+ P  Q +                   E
Sbjct: 562 RDAVMIDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L  D P G            + L  +   A+  GLK+ YY+R+
Sbjct: 652 GLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGLKSIYYIRT 701


>gi|325694008|gb|EGD35926.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK150]
          Length = 719

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 283/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVLNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E   +     CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332561218|ref|ZP_08415536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
 gi|332275016|gb|EGJ20332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
          Length = 755

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 256/590 (43%), Gaps = 86/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E E       FY+ L  F F+ +      +G+ R   L +CF + TVPD +
Sbjct: 37  RIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGSGRTVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G                   KV+R + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGG------------------KVYRTLQARDLWNRIMRSTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGS+NL    A       +
Sbjct: 244 VIFIDRINQMNNLAYCETISATNPCGEQPL----PPYGACLLGSVNLARLVAKPFSDGAE 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL ++ + Y 
Sbjct: 300 LDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALLMVGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  M+ I+  A  AS +LA+E+GA+  F                   E    
Sbjct: 360 SEEAAARTEAWMKAIARSAYLASADLAREKGAFPLF-------------------EADKY 400

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           L     + +  ++++  ++T G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 401 LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYKRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   +  LW E M           G+   +PD        A    P+
Sbjct: 460 LQKDGSRTEEEVVDYAVR--LWREQM-----------GDAP-LPDYFVNAQTLA----PL 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
             +   +  QKWID + S  +   E  G ++   +Y  AW  G K  TTY
Sbjct: 502 EHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTY 551


>gi|77413116|ref|ZP_00789316.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77160817|gb|EAO71928.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 719

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 167/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           EK A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLRDAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPID--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|319938785|ref|ZP_08013149.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811835|gb|EFW08101.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 719

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 180/662 (27%), Positives = 289/662 (43%), Gaps = 90/662 (13%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N 
Sbjct: 87  HDQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-- 522
            +K   D++ R   ++    IPD F +   +N    LFSP     +   YG  F  AY  
Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSP---YSIEREYGVPF--AYID 320

Query: 523 --ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y+      +I    KI A  L  ++  +  E+G+P++   D  N  +P    G + 
Sbjct: 321 ITEKYDELVANPKINK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKII 377

Query: 581 SSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI        LN + E         CNLGS N++    +  F       +IRT 
Sbjct: 378 MSNLCSEILQVQESSLLNDAQEFLRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTM 432

Query: 629 VRVLDNVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            R L  V D +      TI+      HT    GLG MG  S L    I Y S E+VE   
Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIAYGSAESVEFTS 489

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDELA-MNRT 741
                +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + + 
Sbjct: 490 IYFMLMNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKD 549

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +P    W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +        
Sbjct: 550 IFIPTAADWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------- 601

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                      E +Q     E  I  + Y    + + E IP      + +A+++D   +I
Sbjct: 602 -----------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVI 639

Query: 858 ESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYL 903
           +  +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+
Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYV 699

Query: 904 RS 905
           R+
Sbjct: 700 RT 701


>gi|86140896|ref|ZP_01059455.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832838|gb|EAQ51287.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 600

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 162/594 (27%), Positives = 255/594 (42%), Gaps = 124/594 (20%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  +   +F  ++P   N G +     SCF + + DD+  I     E  M++K  GG 
Sbjct: 90  KFYKYMGEGYFSLASPVWSNFGKKRGLPISCFGSHIDDDMGNILYTQSEVGMMSKLGGGT 149

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA +   NG + G +  +++ +     V+QG  R+G    YL   H D++
Sbjct: 150 SGYFGKIRHRGAAVK-NNGYASGAVHIMQLFDKMVDVVSQGSVRRGRFSPYLPISHPDIK 208

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL++       ++ TH               VT ++ W                     
Sbjct: 209 EFLEIGTEGNSIQQLTHG--------------VTVDSTWM-------------------- 234

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E  +   D+ E+           W K+L    E G+P+I + D  N   P  +    H
Sbjct: 235 -QEMIDGDTDKREV-----------WAKVLQRRGEMGYPYIFYTDNANNGKPDVYKDKGH 282

Query: 581 ---SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVLDNV 635
              +SNLCTEI L SS E + VC L SIN+L         YDK  +T  + T V  LD V
Sbjct: 283 DIYASNLCTEIMLPSSDEWSFVCVLSSINVL--------HYDKWKNTDAVETMVCFLDAV 334

Query: 636 IDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPYASP 677
           +      +E+ + S++                  ++RA+GLG++G+ S L      + S 
Sbjct: 335 LTEFIDKLEEYRDSDNRDHRQTFMFMERAYNFAKSNRALGLGVLGWHSLLQSKRHAFDSQ 394

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  E    I   +  AS ELA++ G   + KG                        
Sbjct: 395 EAYDLNSEIFREIKQRSYKASEELAEKFGEPETLKG------------------------ 430

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS 796
                              G RN+   AIAPT + A I G VSQ I+P + N+YVK    
Sbjct: 431 ------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNVYVKDIAK 472

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
              T+ N FL    +++ +    +   ++ +DGS+ ++E + +  K +  T  EID M +
Sbjct: 473 IKTTIKNPFLEELFEEKGMNTPEVWRSVRDNDGSVQHLEFLTEQEKDVFKTYAEIDQMAI 532

Query: 857 IESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           I  A+ RQ  IDQ QS+NL +  D P  K+++ I+  AW +GLK+ YY  S +A
Sbjct: 533 IYQAANRQNHIDQGQSINLLVHPDMPI-KEINKIHITAWKLGLKSLYYQHSMNA 585


>gi|228476825|ref|ZP_04061470.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
 gi|228251399|gb|EEK10544.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
          Length = 719

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 269/608 (44%), Gaps = 80/608 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           EK A +  N +    +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 EKLASDLANEMIHQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ 
Sbjct: 196 RIGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +    N    LFSP  V      Y
Sbjct: 256 FHPDILAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSV---EKEY 312

Query: 515 GKEF---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           GK +   +I     E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +
Sbjct: 313 GKPYNYIDITAMYDELVANPNITKT--KINARELETEISKLQQESGYPYIVNVDTANRHN 370

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI        LN + E   +     CNLGS N+L    +  F   
Sbjct: 371 PID--GKIIMSNLCSEILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF--- 425

Query: 620 KLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               +IR     L  V D +    +   K  N      GLG MG  S L   HI Y SPE
Sbjct: 426 --GRSIRAMTCALTFVTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPE 483

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL 736
           +VE  +     +++  +  S  +A+ER   +  F+ S + D   F     G      D +
Sbjct: 484 SVEFTNIYFMLMNYWTLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRI 543

Query: 737 A-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +     +P    W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  
Sbjct: 544 KELFDGHFIPQAKDWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-- 601

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                            E +Q     E  I  + Y    + + + IP      + +A+++
Sbjct: 602 -----------------EERQ-----EKKIGKIYYPANGL-STDTIP-----FYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L+L              ++ + + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYIRT 701


>gi|257092627|ref|YP_003166268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045151|gb|ACV34339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 969

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/547 (28%), Positives = 246/547 (44%), Gaps = 73/547 (13%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  + D +        GI+ AL E A   +  GG+G D++ +R +GA + GT  +
Sbjct: 97  LINCFVQPIGDSVVEIVDGKPGIYSALAEAAETMRRGGGVGYDFSAIRPMGAIVKGTQSR 156

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + +++V + +   V   G R+GA    L   H D+E F+   K+ GD      + N
Sbjct: 157 ASGPVSYMRVFDRSCETVESAGSRRGAQMGVLRCDHPDIEVFIHA-KDHGD----LTNFN 211

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +A        EV   H             ++R  D G I V+R++
Sbjct: 212 VSIAVTDAFMEAVEADA--------EVELTHRAEPNADMKRASAFQR--DDG-IWVYRRV 260

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW +++   ++   P I F D  N  +   +  V+ ++N C E  L         C
Sbjct: 261 RARDLWDQVMKSTYDHAEPGILFLDRMNKDNNLYYCEVIEATNPCAEQPL----PPYGCC 316

Query: 601 NLGSINLL-----AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGSINL      A  A  +FD+      I+ + R+LDNV+D+    +++ ++     R 
Sbjct: 317 CLGSINLTLFVKDAFSARAEFDFAAFGEVIKVSTRMLDNVLDVTAWPLDRQREEAANKRR 376

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G    L +L + Y  PEA  +     EF+   A  ASV+LA+ERGA+  F   L
Sbjct: 377 VGLGFTGLGDTLCMLCLRYDRPEATAMGARISEFMRDTAYLASVDLAKERGAFPLFNAEL 436

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
           +  G                   N  SRLP  E+K  ++  G+RNS+ ++IAPT TI  A
Sbjct: 437 YLSG------------------GNFASRLP-TEIKAEIRKHGLRNSHLLSIAPTGTISLA 477

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P +   Y +     D T +  + V +   R          L  H G  G+
Sbjct: 478 FADNASNGIEPPFSWTYSRKKRMADGT-LKEYAVEDYAWR----------LYKHQG--GD 524

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           +E++PD       TA EI      +  +    +ID   ++++N+  D P     D +Y  
Sbjct: 525 VEKLPD----YFVTALEISAKAHKDMVAAVAPYIDTSISKTVNVPADYPYEDFQD-LYLS 579

Query: 892 AWLMGLK 898
           AW  GLK
Sbjct: 580 AWKAGLK 586


>gi|25010892|ref|NP_735287.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23095271|emb|CAD46481.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 719

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 167/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           EK A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPID--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|77408851|ref|ZP_00785578.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|77172537|gb|EAO75679.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 719

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 168/662 (25%), Positives = 287/662 (43%), Gaps = 76/662 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           E+ A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRL----- 744
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++    T+       
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFTNHFIPEAK 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+ +  S
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRTFTDDS 706

Query: 911 VE 912
            E
Sbjct: 707 SE 708


>gi|146318861|ref|YP_001198573.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 05ZYH33]
 gi|146321069|ref|YP_001200780.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 98HAH33]
 gi|253751942|ref|YP_003025083.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis SC84]
 gi|253753765|ref|YP_003026906.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis P1/7]
 gi|253755357|ref|YP_003028497.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis BM407]
 gi|145689667|gb|ABP90173.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           05ZYH33]
 gi|145691875|gb|ABP92380.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           98HAH33]
 gi|251816231|emb|CAZ51858.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis SC84]
 gi|251817821|emb|CAZ55574.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis BM407]
 gi|251820011|emb|CAR46181.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis P1/7]
 gi|292558518|gb|ADE31519.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           suis GZ1]
 gi|319758304|gb|ADV70246.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis JS14]
          Length = 719

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 170/659 (25%), Positives = 288/659 (43%), Gaps = 86/659 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E+ A+   N +
Sbjct: 88  DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGDEELALNLANEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPRIRK-TKIKARDLETEISKLQQESGYPYVINIDTANRSNPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        LN S E  ++     CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSILNDSQEYLSMGTDVSCNLGSTNIVNLMKSPDF-----GRSVRTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   +  N    +IGLG MG  S L    I Y S  AVE  +     +++
Sbjct: 438 YVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNY 497

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMNR 740
             +  S  +A+ER A + +F  S +  G +             D +  L E      +  
Sbjct: 498 WTLVESNNIARERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFE-----GIFI 552

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            S   W EL+++V   G+ + N +A+AP  +I+ I  VS SI P  Q +           
Sbjct: 553 PSGQDWAELREKVMADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------- 601

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                   E +Q     E  I  + Y    +   E IP      + +A+++D   +I+  
Sbjct: 602 --------EERQ-----EKKIGKIYYPAAGL-TTETIP-----FYKSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|84516707|ref|ZP_01004066.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
 gi|84509743|gb|EAQ06201.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
          Length = 769

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 163/611 (26%), Positives = 268/611 (43%), Gaps = 93/611 (15%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I++  +  + R+A  LA  E + +    +FY+ L+ F ++ +      +GT 
Sbjct: 19  FKQADGTPIDISVEDTWHRIAKSLAAVEADPQAWEPKFYDALADFKYLPAGRITAGAGTA 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGASVLGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMAVMRCDHPDIEAFITAKS----DAARLRMFNMS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I D FM  V     W L                       ++ Q       V++ + A
Sbjct: 195 VLITDPFMAAVKAGGDWDLL----------------------FDGQ-------VYKTLKA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++   ++   P + F D  N  +   +   + ++N C E  L         C L
Sbjct: 226 RDLWDTIMQSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSIN+ A   ++ F      D + L   + TAVR++DNV+D +   +   +      R I
Sbjct: 282 GSINM-ARLVSDPFSDSAKLDANALTDLVATAVRMMDNVVDASRFPLPAQQHEAMNKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL ++ + Y S EA    D  M  I+  A  ASV+LA+E+GA+  F     
Sbjct: 341 GLGVTGLADALLMVGLRYGSEEAAAQTDAWMHAIARAAYLASVDLAKEKGAFPLF----- 395

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                  D+   LA      AM +      D++++ ++T G+RN+   +IAPT TI+   
Sbjct: 396 -------DADKYLASG----AMQQMD----DDVREAIRTHGIRNALLTSIAPTGTISLYA 440

Query: 777 G-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN 833
           G VS  I+P +   Y +  +  D T     +V+   Q  RDL  +A + D   +  ++  
Sbjct: 441 GNVSSGIEPVFAYAYTRKVLQKDGTKTEEEVVDYAVQMWRDLKGDAPLPDYFVNAQTLAP 500

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
           ++ +     ++ A A               QKWID + S  +   E  S      +Y  A
Sbjct: 501 LDHV-----RMQAAA---------------QKWIDSSISKTINCPEDISFDAFKEVYMAA 540

Query: 893 WLMGLK--TTY 901
           W  G K  TTY
Sbjct: 541 WDQGCKGCTTY 551


>gi|306829460|ref|ZP_07462650.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
 gi|304428546|gb|EFM31636.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
          Length = 719

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 289/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y S E+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + R   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFRDVFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELREKVQANGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|83952673|ref|ZP_00961403.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
 gi|83835808|gb|EAP75107.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
          Length = 820

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 165/629 (26%), Positives = 265/629 (42%), Gaps = 106/629 (16%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E         F+  L  F ++ +      +GT R   L +CF + TVPDD+
Sbjct: 23  RIARALAQAEKTPADWEGRFFEALEDFKYLPAGRITAGAGTGRSVTLFNCFVMGTVPDDM 82

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 83  GGIFDMLREAALTMQQGGGIGYDFSTIRPRGADVKGVGADASGPLSFMDVWDAMCRTIMS 142

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 143 AGSRRGAMMATMRCDHPDIEQFIAAKS----DPARLRMFNLSVLVTDPFMEAVRADGSWD 198

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                               + KV+R I A  LW  ++   ++   P 
Sbjct: 199 LIF-----------------------------DGKVYRTIQARDLWNTIMQATYDYAEPG 229

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N ++   +V  + ++N C E  L         C LGSIN+    A+       
Sbjct: 230 VIFIDRINAQNNLNYVETIAATNPCGEQPL----PPYGACLLGSINMARLVADPFSEAAH 285

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   + TAVR++DNV+DI+   +   +      R IGLG+ G   AL ++ + Y 
Sbjct: 286 LDEGALNDLVETAVRMMDNVVDISRFPLPAQEAEAQNKRRIGLGVTGLADALAMVGLRYG 345

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA E     M  I+  + +AS  LA E+GA+  +    + +   P+    L AE R  
Sbjct: 346 SPEAAEQTGVWMARIANASYAASARLAGEKGAFPLYDAKAYAKA--PMIK-KLDAETRAL 402

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           +A +                 G+RN+   ++APT TI+   G VS  I+P + N Y +  
Sbjct: 403 IAEH-----------------GLRNALLTSVAPTGTISLYAGNVSSGIEPIFANSYTRKV 445

Query: 795 MSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           +  D +     +V+   Q  RD+  +A + +   +  ++      P D  ++ A A    
Sbjct: 446 LQKDGSRTEEEVVDYAVQMWRDVKGDAPLPEYFVNAQTLS-----PADHVRMQAAA---- 496

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY---- 901
                      Q W+D + S  +   E     +DF     +Y QAW  G K  TTY    
Sbjct: 497 -----------QDWVDSSISKTINCPE----DIDFEAFKDVYMQAWDTGCKGCTTYRPND 541

Query: 902 ----YLRSRSATSVEKSTLKGVDGKLNAV 926
                L   +  +   +T K   GKL A+
Sbjct: 542 VTGSVLSVEAPANATAATGKDFRGKLEAL 570


>gi|289551412|ref|YP_003472316.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658920|ref|ZP_07911787.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
 gi|289180943|gb|ADC88188.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496044|gb|EFU84372.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
          Length = 701

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 154/603 (25%), Positives = 271/603 (44%), Gaps = 67/603 (11%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           + ++     +  A+   IK  +K  A  +   +     ++G+P++ FKD  N      ++
Sbjct: 317 DIDLEQYYDDMVANPNIIK--KKKDAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNI 374

Query: 577 GVVHSSNLCTEITLNSSSEETAV---------------CNLGSINLLAHFANNQFDYDKL 621
           G +  SNLCTEI      +ET++               CNLGS+N++     N  +  K 
Sbjct: 375 GQIKMSNLCTEIF---QLQETSIINDYGIDDEIKRDISCNLGSLNIV-----NVMETGKF 426

Query: 622 ASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             ++ T +  L  V D  N       +K+N    ++GLG+M          I Y S EA 
Sbjct: 427 RDSVFTGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYFAKNKIGYESEEAK 486

Query: 681 EIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRD 734
           + A+     ++++++  S+++A+ERG  Y  F+ S +  G +       D     A+V+ 
Sbjct: 487 DFANVFFMMMNYYSLERSMQIAKERGQVYQDFEQSDYANGKYFSFYTAQDITPRFAKVQQ 546

Query: 735 EL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +   +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P         
Sbjct: 547 LFEGIEIPTAEDWKALQQQVEAHGLYHAYRLAIAPTQSISYVQNATSSVMP--------- 597

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                       +V+++++R   +      + +          +  +    + +AF  D 
Sbjct: 598 ------------IVDQIERRTYGNAETFYPMPF----------LSPETMWYYKSAFNTDQ 635

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE
Sbjct: 636 MKLIDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK-LLSVE 694

Query: 913 KST 915
           + T
Sbjct: 695 ECT 697


>gi|34496901|ref|NP_901116.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
 gi|34102757|gb|AAQ59121.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
          Length = 950

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 156/554 (28%), Positives = 257/554 (46%), Gaps = 80/554 (14%)

Query: 368 LSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +        GI+ AL + A   +  GG+G +++ +R  GA + GTN +
Sbjct: 82  LINCFVQPVGDSVSETEHGKVGIYQALLQAAETMRRGGGVGYNFSRIRPRGARVKGTNSR 141

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + +++V + +   V   G R+GA    L+  H DVE+F+   K+ GD R    + N
Sbjct: 142 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLDVSHPDVEDFIHA-KDQGDLR----NFN 196

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +A W L     V  + D +   F        R+AD   + V+R +
Sbjct: 197 ISVGVSDDFMRAVEADADWQLTH--AVEPMSDAFPDSF--------RRAD--GLWVYRTV 244

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWR+++   ++   P + F    N  +   +  V+ S+N C E  L     +   C
Sbjct: 245 RARDLWRQIMESTYDHAEPGVLFMTRINQDNNLSYCEVIESTNPCGEQPL----PDYGCC 300

Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +LGS+NL  H    F +   FD+      +R +VR+LDNV+D+    + + ++     R 
Sbjct: 301 DLGSVNLTRHVRAPFGDKAHFDFKSFEKVVRMSVRMLDNVLDLTVWPLPEQQREAMNKRR 360

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G   AL +L I Y S E    A    E +   A  ASV+LA E+GA+  F    
Sbjct: 361 VGLGFTGLGDALIMLKIRYDSEEGRRFAARISESMRDAAYDASVDLAIEKGAFPLF---- 416

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
                   D+   LA      A +  SRLP  +++ R++  G+RNS+ ++IAPT TI  A
Sbjct: 417 --------DAEKYLA------APHCASRLP-AKIQARIRKHGIRNSHLLSIAPTGTISLA 461

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-- 831
                S  I+P +   Y +     D    NS             E ++ D  Y    +  
Sbjct: 462 FADNASNGIEPPFSWFYTRKKRMAD----NS-----------QQEYLVEDHAYRVWRMQG 506

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIY 889
           G+  ++PD       +A E+  +  +   +    ++D A  +++N+  D P  +  + +Y
Sbjct: 507 GDTAKLPD----YFVSALEMSALDHMRMVAAVAPYVDTAISKTVNVPADYPF-EDFESLY 561

Query: 890 RQAWLMGLK--TTY 901
            +AW  GLK  TTY
Sbjct: 562 LEAWRNGLKGITTY 575


>gi|257885401|ref|ZP_05665054.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257821257|gb|EEV48387.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 719

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPA 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|293570829|ref|ZP_06681876.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609097|gb|EFF38372.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 719

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|320546424|ref|ZP_08040739.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
 gi|320448809|gb|EFW89537.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
          Length = 719

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 266/590 (45%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +  SCFL ++ DD+  I  ++     L++  GG+G + + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISMTDDMNSIGRSINSALQLSRIGGGVGINLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDILAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E     A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELTRNNEDMYLFSPFSVEREYGVPYSYVDITAEYDNMVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +   +K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+E+ 
Sbjct: 331 NPNIVKT--KIKARDLETEISKLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E T +     CNLGS N++    +  F       +I+   R L  V D
Sbjct: 387 QVQTPSVINDAQEFTKMGTDISCNLGSTNIVNMMTSPDF-----GRSIKAMTRALTFVSD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +   ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++  + 
Sbjct: 442 TSSIESVPTIKHGNEQAHTFGLGAMGLHTFLAQNHIQYGSPESIEFTNIYFMLLNYWTLV 501

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT-SRLPWDEL 749
            S ++A+ER   +  F+ S +  G +       D +     V++  A +   S   W EL
Sbjct: 502 ESNKIARERKQTFVGFEKSSYADGSYFDKYITDDYVPKSDRVKELFAKHFIPSGKDWLEL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V   G+ + N +A+AP  +I+ I  VS S+ P  Q +                   E
Sbjct: 562 RDAVMRDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|325690075|gb|EGD32079.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK115]
          Length = 719

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL  +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELCDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|48696468|ref|YP_024510.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage K]
 gi|37729162|gb|AAO47529.1| ORF80 [Staphylococcus phage K]
 gi|119658117|gb|ABL87152.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage 812]
 gi|182627941|gb|ACB89103.1| gp ORF110 [Staphylococcus phage A5W]
          Length = 704

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/590 (28%), Positives = 261/590 (44%), Gaps = 62/590 (10%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  STPT  NSG     +LSSC+L  V D +  +       A  +   GG+  D T +R 
Sbjct: 149 FQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNGGGVAIDLTRIRP 208

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +      S+GVI F K         +QGG R+G+   YL  +H D+ + L  +K  
Sbjct: 209 KGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHNDILDLLSSKKIN 268

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             +  R   ++    IP+ FM+ V +   +  F   +++ ++  Y  E  I  E Y++  
Sbjct: 269 ASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKMYGKYLDELNID-EWYDKLL 327

Query: 530 DRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           +   I KV  K  A  +   +     E+G+P++ + D  N   P +++G V  SNLCTEI
Sbjct: 328 NNDSIGKV--KHDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLGKVKMSNLCTEI 385

Query: 589 T-LNSSSE-------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           + L   SE                VC LGS+NL+     N  +   L  ++    R L  
Sbjct: 386 SQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLV-----NVVEKGLLNESVDIGTRALTK 440

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V DI +   +   +K+N   RAIGLG M     L    I Y S EA+++ +     I+F 
Sbjct: 441 VTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDLVNSLYSAINFQ 500

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PW 746
           +I  S+ +A+E G  +  F+ S +  G + +  I    + + + A     ++       W
Sbjct: 501 SIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVLDKVYIPTQDDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           DEL K VK  G+ N    A APT +I+ +   + SI P                     +
Sbjct: 561 DELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMP---------------------V 599

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            + ++ R   D      + Y    +  I +   +      TA++ID   +I +++  QK 
Sbjct: 600 PSAIENRQYGDMETYYPMPY----LSPITQFFYE----GETAYKIDNKRIINTSAVVQKH 651

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E  T
Sbjct: 652 TDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECET 701


>gi|73663295|ref|YP_302076.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495810|dbj|BAE19131.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 701

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 178/692 (25%), Positives = 298/692 (43%), Gaps = 74/692 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLV--YLANDLK----YERDFAFE---YLGLQILYDRY 305
           YF   IE   + R L ++   FDL   Y   DL+    Y +   FE   Y+     +  Y
Sbjct: 49  YFDTEIE---RLRYLVDNDFYFDLFAKYSEADLQEITDYAKSIPFEFASYMSASKFFKDY 105

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TR 364
            L  NG + +  + +   VA+         +  A +F + +    +  +TPT  N+G  R
Sbjct: 106 ALKTNG-KSQYLEDYKQHVAIVALYLANGHKATAKQFISAMVEQRYQPATPTFLNAGRAR 164

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL    D L  I         L+K  GG+  + + +R  G  I G  G ++GV
Sbjct: 165 RGELVSCFLLEADDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGV 224

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   
Sbjct: 225 LPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLI 284

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +P  F     +   + +F+P  +   + L   +  +  E Y+       I   +K  A  
Sbjct: 285 VPSKFFDLAKEGKDFHMFAPHTIYKEYGLTLDDINLD-EYYDELVANPNIDK-KKKDARE 342

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEET 597
           +   +     ++G+P++ FKD  N       +G +  SNLCTEI        +N    E 
Sbjct: 343 MLNTIAQTQLQSGYPYLMFKDNANKVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTED 402

Query: 598 AV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNH 651
            +     CNLGS+N++     N  +  K   ++ T +  L  V D  +       +K+N 
Sbjct: 403 EIKRDISCNLGSLNIV-----NVMESGKFKDSVHTGMDALTVVSDEADIQNAPGVRKANR 457

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
              ++GLG+M     L    I Y S EA + A+     +++++I  S+E+A+ER   Y  
Sbjct: 458 ELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMLNYYSIERSMEIAKERQEVYKD 517

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCM 764
           F+ S +  G +         E + E        L       W  L+++V+T G+ ++  +
Sbjct: 518 FEQSDYANGKYFEFYTSQTFEPKYEKVRKLFDGLEIPTPEDWKALQEQVETNGLFHAYRL 577

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT +I+ +   + S+ P                     +V+++++R   +      +
Sbjct: 578 AIAPTQSISYVQNATSSVMP---------------------IVDQIERRTYGNAETFYPM 616

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
            +          +  +    + +AF  D M LI+  S  Q  IDQ  S  LY++ E S +
Sbjct: 617 PF----------LSPETMWYYKSAFNTDQMKLIDLISTIQTHIDQGISTILYVNSEISTR 666

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 667 ELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|293553989|ref|ZP_06674591.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601846|gb|EFF32096.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 719

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|257899643|ref|ZP_05679296.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|257837555|gb|EEV62629.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
          Length = 719

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 292/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGKSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|196046537|ref|ZP_03113762.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225863314|ref|YP_002748692.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228914022|ref|ZP_04077644.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229183643|ref|ZP_04310866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|196022721|gb|EDX61403.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225789936|gb|ACO30153.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228599886|gb|EEK57483.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|228845627|gb|EEM90656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 563

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 248/508 (48%), Gaps = 35/508 (6%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+E+G  +  F  S +  G +      ID   +  +V+   A +
Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765
           +  ++  W++LK++V   G+ N+  C A
Sbjct: 533 HIPTKEDWNQLKRQVMEHGLYNALTCSA 560


>gi|118476920|ref|YP_894071.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416145|gb|ABK84564.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bacillus thuringiensis str. Al Hakam]
          Length = 575

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 248/508 (48%), Gaps = 35/508 (6%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+E+G  +  F  S +  G +      ID   +  +V+   A +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765
           +  ++  W++LK++V   G+ N+  C A
Sbjct: 545 HIPTKEDWNQLKRQVMEHGLYNALTCSA 572


>gi|324990558|gb|EGC22494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK353]
          Length = 719

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 163/590 (27%), Positives = 259/590 (43%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E  A
Sbjct: 271 ADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCSEIL 386

Query: 589 ------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  LN + E         CNLGS N++    +  F       +IRT  R L  V D
Sbjct: 387 QVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFVTD 441

Query: 638 INCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +  T +      N      GLG MG  S L    I Y S EAVE        +++  + 
Sbjct: 442 SSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWTLV 501

Query: 697 ASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPWDEL 749
            S  +A+ERG  + +F+ S +  G  F     G      D +      +   S   W EL
Sbjct: 502 ESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDWAEL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                   E
Sbjct: 562 RDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|319954719|ref|YP_004165986.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
 gi|319423379|gb|ADV50488.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
          Length = 595

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 160/597 (26%), Positives = 254/597 (42%), Gaps = 130/597 (21%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  +S  ++  ++P   N G       SCF + + DD+  I     E  M++K  GG 
Sbjct: 85  KFYGYMSDGYYSLASPVWSNFGKERGLPISCFGSHIDDDMGNILYTQSEVGMMSKMGGGT 144

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA +   NG++ G +  +++       V+QG  R+G    YL   H D+ 
Sbjct: 145 SGYFGKIRHRGAEVK-NNGQASGAVHIMQLFESMVDVVSQGSVRRGRFSPYLPVEHPDIS 203

Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EFL++       +  TH +   N W+ ++                D  SD          
Sbjct: 204 EFLEIGTEGNPIQELTHGVTVTNEWMQEMI---------------DGDSDKR-------- 240

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574
                                   A+W K+L    E G+P+I FKD  N     +     
Sbjct: 241 ------------------------AIWAKVLQRRGEMGYPYIFFKDNANNGAADVYKDNN 276

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST--IRTAVRVL 632
           H   +++SNLCTEI L S+   + VC L SIN++         YDK   T  + T V  L
Sbjct: 277 HT--IYASNLCTEIMLPSNDNWSFVCVLSSINVM--------HYDKWKDTDAVETMVYFL 326

Query: 633 DNVIDINCHTIEKAKKSNH------------------THRAIGLGLMGFQSALHLLHIPY 674
           D VI      +E  + S+                    +RA+GLG++G+ S L    +P+
Sbjct: 327 DAVITEFLDKLEVYRDSDRREDRQTFLFMERAYNFAKDNRALGLGVLGWHSLLQSEMLPF 386

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S +A ++ +E    I   +  AS ELA + G  +  KG                     
Sbjct: 387 NSQKAYDLNNEIFRTIKSKSYKASEELASKFGEPAVLKG--------------------- 425

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                                 G RN+   A+APT + A I G VSQ I+P + N+YVK 
Sbjct: 426 ---------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKD 464

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                 T+ N FLV+ L+++      +   ++  DGS+ +++ + D  K++  T  EID 
Sbjct: 465 IAKIKTTIKNPFLVDLLEEKGQNITEVWHSIRERDGSVQHLDFLSDLEKEVFKTYSEIDQ 524

Query: 854 MWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +I  A+ RQ  IDQ QS+N+ +  D P  K+++ I+  AW +GLK+ YY  S +A
Sbjct: 525 LDIIYQAANRQNHIDQGQSVNIIVHPDMPV-KEINKIHVTAWKLGLKSLYYQHSMNA 580


>gi|83594588|ref|YP_428340.1| ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577502|gb|ABC24053.1| Ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 786

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 163/615 (26%), Positives = 272/615 (44%), Gaps = 83/615 (13%)

Query: 310 NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367
           +GS +E  P+  F RV  G+  ++  +          + +  +         +GT R   
Sbjct: 21  DGSSLEQGPEDSFARVCRGIYARDPRRAVHEPLALEAMKALEWCPGGRIHAGAGTDRRVT 80

Query: 368 LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +CF+   VPD + GI  AL   A+  +  GG+G D++ +R  GA +  T   S G + 
Sbjct: 81  LINCFVNMIVPDRMDGIMEALTRAALTMQQGGGIGTDFSTLRPRGAKVRRTGSVSSGPLS 140

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+++ +     +  GG R+GA+   +   H D+  F+  +   G    R  + N +  + 
Sbjct: 141 FMEIWHAMCGTIMSGGARRGAMMGTMICDHPDLPAFITAKAQAG----RLTNFNVSVLVT 196

Query: 487 DLFMKRVTQNAGWTL-FS--PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           D FM+ V ++A W L FS  P + + L  +  +  E  Y             V+ ++SA 
Sbjct: 197 DAFMRAVDEDATWDLGFSVPPADPARLVAVTERNGEPWY-------------VYERLSAR 243

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           ALW K++   ++   P + F D  N R+   +   +  +N C E  L  + +    CNLG
Sbjct: 244 ALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGEQPLPPNGD----CNLG 299

Query: 604 SINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            +NL     +      +FD  +LA      VR LDNV+D++   +E   K     R +GL
Sbjct: 300 CVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEAQAKRRLGL 359

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG  +AL +L + Y SP A+      M  +   A  AS ELA ERG +      L+D 
Sbjct: 360 GIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGERGPF-----PLYD- 413

Query: 719 GVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA-NIC 776
                         RD+ LA      LP D+L+ ++   G+RN   + IAPT T A    
Sbjct: 414 --------------RDQLLARPFIQELP-DDLRAKIAEQGLRNGVMLTIAPTGTTAIYYN 458

Query: 777 GVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            VS  ++P++   Y +  +  D     F V+++   +  + R L            D + 
Sbjct: 459 NVSSGLEPTFGWRYFRKVLRPDGGHDEFAVIDAGFESWCRTRGL------------DPAT 506

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FI 888
             +  +PD +     TA E+     +   +  Q++ID   S++  ++ P+    D    +
Sbjct: 507 APLTGLPDSM----VTALELSVEDHLRMQAACQEFID--ASISKTINCPADMSYDSFAAV 560

Query: 889 YRQAWLMGLK--TTY 901
           Y+ A+ MG K  TTY
Sbjct: 561 YKLAYEMGCKGCTTY 575


>gi|319744838|gb|EFV97176.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 719

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           E+ A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFANGDEELATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|76787476|ref|YP_329565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|76562533|gb|ABA45117.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
          Length = 719

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           E+ A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDTQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|38638229|ref|NP_944412.1| ribonucleotide reductase subunit 1 [Psittacid herpesvirus 1]
 gi|81987372|sp|Q6UDJ2|RIR1_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|34500235|gb|AAQ73718.1| ICP6 [Psittacid herpesvirus 1]
          Length = 811

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 175/673 (26%), Positives = 276/673 (41%), Gaps = 85/673 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY- 343
           L+  R F   YLG           +   R+E    FF+R+A   A      +  A   + 
Sbjct: 154 LQSARKFESMYLG----------KLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFR 203

Query: 344 --------NLLSSFHFMC--------STPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGA 386
                   N +    FM          TP +  +GT     +SCFL  V       +  +
Sbjct: 204 DGTRAPDANTVFCLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTS 263

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG---KSQGVIPFLKVANDTAVAVNQGGK 443
           + E  +   +S G         G+G ++   +     S G++  LK  +    A N    
Sbjct: 264 IAEEIIPVMHSHG---------GIGLYMDCDSNWDDNSSGMMLALKALDSIIAASNAVSA 314

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R   +C Y+E WH D+ + L  R    G++  R  +   A W+PDLFMKR   N  WTLF
Sbjct: 315 RPSGLCVYVEPWHRDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLF 374

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                + L DLYG+EFE  YE  ER+ + G      +    AL +  ++    TG P++ 
Sbjct: 375 D-GRAAHLSDLYGEEFEKEYELLERK-NVGIATYPARDVMFALIKSAVS----TGTPFVM 428

Query: 563 FKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------ 615
           FK   N        G  +  SNLCTEI   +  E   VCNL S+NL A            
Sbjct: 429 FKHAVNRNYFFDMAGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTP 488

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FDY         A   ++ ++ ++   I++A   N   R+IG+G+ GF +A  L  
Sbjct: 489 PIGTFDYSSFRDACAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQG 548

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLA 730
               S EA     +  E ++      S  + +     +  F  S + +G   +D      
Sbjct: 549 FGLDSVEACRFNGKLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPARH 608

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
              D           WD L++ +K  G+ N   +A+ PTA+ + +  VS+ I P + N++
Sbjct: 609 LYFDG----------WDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIF 658

Query: 791 VKSNMSGDFTVVNSFLV--------NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            K   +G+   +N  L+        N+ ++RD+  E +  +     G+ G        L 
Sbjct: 659 SKITTTGEDIQLNVALMETIECLYPNKAERRDIL-ERLHKNKWSTRGAFGAALPSQHPLT 717

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGL 897
           K   TAFE D   L+  ++ R  ++D +QS  LY+ E         ++  +   A+  GL
Sbjct: 718 KFD-TAFEADQEHLLRLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGL 776

Query: 898 KT-TYYLRSRSAT 909
           KT  YY + R AT
Sbjct: 777 KTGMYYCKVRKAT 789


>gi|69245953|ref|ZP_00603725.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257880354|ref|ZP_05660007.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257891013|ref|ZP_05670666.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894266|ref|ZP_05673919.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258614694|ref|ZP_05712464.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium DO]
 gi|260562342|ref|ZP_05832856.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|293563176|ref|ZP_06677634.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|293568384|ref|ZP_06679705.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|294617335|ref|ZP_06696974.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|314939362|ref|ZP_07846603.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|314941565|ref|ZP_07848450.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|314949608|ref|ZP_07852932.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
 gi|314953715|ref|ZP_07856590.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|314992171|ref|ZP_07857615.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|314997662|ref|ZP_07862592.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|68195483|gb|EAN09927.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257814582|gb|EEV43340.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257827373|gb|EEV53999.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830645|gb|EEV57252.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260073266|gb|EEW61607.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|291588905|gb|EFF20732.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|291596408|gb|EFF27662.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|291604867|gb|EFF34343.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|313588297|gb|EFR67142.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|313593274|gb|EFR72119.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|313594299|gb|EFR73144.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|313599624|gb|EFR78467.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|313641347|gb|EFS05927.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|313644032|gb|EFS08612.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
          Length = 719

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|703072|gb|AAA80556.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 820

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 177/663 (26%), Positives = 283/663 (42%), Gaps = 79/663 (11%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN-------LL 346
           LGLQ  + Y+ Y + + G + E    FF+R+A   A +   ++       N         
Sbjct: 172 LGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKPLIASLTNGSANWRTAF 231

Query: 347 SSFH-------FMCSTPTLFNSGTRHPQLSSCFL----TTVPDDLYGIFGALQENAMLAK 395
           +SF        F+ STP +   G      +SC+L    TT   D   +        +LA+
Sbjct: 232 TSFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQDTIKVITNDVVPHLLAR 291

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
                        G+G  +   N KS G++  LK+ +   VA N    R   VC YLE W
Sbjct: 292 ------------GGIGISLQHVNQKS-GLMHVLKLIDSLIVATNVNESRPTGVCVYLEPW 338

Query: 456 HIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVS 508
           H D+   L +R     ++ RR  ++  A W  DL  KR        +N  WTLF     S
Sbjct: 339 HSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNGEKNVMWTLFD-SRAS 397

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L  LYG +FE+ YE  E++     I V  +I    +   ++     TG P+I FKD CN
Sbjct: 398 ILSKLYGDKFEVEYERLEKEG----IGV-AQIPIRDMMFAIIKSAASTGSPFILFKDACN 452

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK----LAS 623
                   G  +  SNLCTEI   ++     VC L SINL         + +     L  
Sbjct: 453 RHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVRRVNVNVNSILMPLGM 512

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             R A    + ++D +     K++     +R+IG+G+ GF +A+  L +         + 
Sbjct: 513 PFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAMLSLGLDLEDGAVRALN 572

Query: 684 DESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            +  E +   A++ S E   ERG   +  F  S + QG    D            ++  T
Sbjct: 573 KQIFELMLLEAMTVSCEFC-ERGLPPFPDFSDSYYAQGRLHFDGWD---------SVELT 622

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W  L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + N++ K   +G+   
Sbjct: 623 APEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFSNMFSKVTSAGELLR 682

Query: 802 VNSFLVNELKQ--------RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            NS L+ +++Q        R     A+ S       ++G+       LK  + TAFE D 
Sbjct: 683 PNSQLMRDVRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTRLLK--YKTAFEYDQ 740

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRS 907
             LI+  + R  ++DQ+QS+ L++ E +       ++  +   A+  GLKT  YY + R 
Sbjct: 741 SLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAGLKTGMYYCKIRK 800

Query: 908 ATS 910
           AT+
Sbjct: 801 ATN 803


>gi|22536983|ref|NP_687834.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|77405563|ref|ZP_00782654.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|77410694|ref|ZP_00787053.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|22533838|gb|AAM99706.1|AE014229_7 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|77163230|gb|EAO74182.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77175870|gb|EAO78648.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 719

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 166/655 (25%), Positives = 286/655 (43%), Gaps = 76/655 (11%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           E+ A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    +   + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGLAT-DTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|294623133|ref|ZP_06702019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
 gi|291597502|gb|EFF28667.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
          Length = 719

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAM 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|157692409|ref|YP_001486871.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pumilus SAFR-032]
 gi|157681167|gb|ABV62311.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus
           pumilus SAFR-032]
          Length = 700

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 166/670 (24%), Positives = 293/670 (43%), Gaps = 81/670 (12%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
           L   SM D   V+ A    Y + F F  ++     Y+ Y L  N  + ++ + +  R+++
Sbjct: 69  LRQYSMADIKEVFEA---AYAKKFRFPSFMSAFKFYNDYALKTNDKK-KILERYEDRISV 124

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG 385
                    + +A+EF  L+ +  +  STPT  N+G  R  +L SCFL  V D L  I  
Sbjct: 125 VALFFAGGDKAKALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISR 184

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G+R+
Sbjct: 185 AIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQ 244

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++     F P 
Sbjct: 245 GSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYTFYPH 304

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            V   +  +  E ++  E Y+   +  ++K   K++   L  K+  +  E+G+P+I F+D
Sbjct: 305 TVYKEYGQHLDEMDME-EMYDELVENPKVKK-EKVNPRKLLEKLAVLRSESGYPYIMFQD 362

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFAN 613
             N      H+  V  SNLC+E+   S     A             CNLGS+N++    N
Sbjct: 363 NVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMNVMKN 422

Query: 614 NQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                  +  T++ A   L  V +  +       +K+N   ++IGLG M     L    +
Sbjct: 423 KS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLAQNQM 477

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAE 731
            Y S EA + A+     +++++I  S ELA+E+G  +  ++GS +  G +    +     
Sbjct: 478 AYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVENDFT 537

Query: 732 VRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP- 784
            + E A      M+  ++  W  LK  V   GM +S  + IAPT +I+ +   + S+ P 
Sbjct: 538 PKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATASVMPI 597

Query: 785 -------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
                  +Y N      M G  +  N F   E                            
Sbjct: 598 MERIEERTYGNSKTYYPMPG-LSAQNWFFYKE---------------------------- 628

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
                     A+++D   +++  +  Q+ +DQ  S  L+L D  + + L+ I   A   G
Sbjct: 629 ----------AYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKG 678

Query: 897 LKTTYYLRSR 906
           +KT YY R++
Sbjct: 679 IKTLYYARTK 688


>gi|159045489|ref|YP_001534283.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
 gi|157913249|gb|ABV94682.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
          Length = 765

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 170/642 (26%), Positives = 271/642 (42%), Gaps = 94/642 (14%)

Query: 306 FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           F   +G+ I++  +  + R+A  LA  E++      +FY  L  F F+ +      +GT 
Sbjct: 19  FKEADGTPIDVTVEDSWRRIARALASVESDPAAWEPKFYAALEDFKFLPAGRITAGAGTE 78

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R   L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + 
Sbjct: 79  RSVTLFNCFVMGTVPDDMGGIFEGLKEAALTMQQGGGIGYDFSTIRPKGAAVKGVAADAS 138

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R    N +
Sbjct: 139 GPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAKS----DPARLRMFNVS 194

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  W L                               + KV+  + A
Sbjct: 195 VLVTDAFMEAVKADGSWDLVF-----------------------------DGKVYHTVEA 225

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   FE   P + F D  N  +   +   + ++N C E  L         C L
Sbjct: 226 RDLWNKIMKATFEYAEPGVIFIDRINAANNLSYCETIAATNPCGEQPL----PPYGACLL 281

Query: 603 GSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           GSINL +   ++ F      D   L   + TAVR++DNV+D +   +E         R I
Sbjct: 282 GSINL-SRLISDPFGEGAALDEAALEELVATAVRMMDNVVDASRFPLEAQAAEARAKRRI 340

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G   AL ++ + Y S  A    +  +  I+  A  ASV+LA E+GA+  F+   +
Sbjct: 341 GLGVTGLADALLMVGLRYGSEAAARQTERWLHRIARAAYLASVQLATEKGAFPLFEADAY 400

Query: 717 DQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            Q G        + A+VR  +A +                 G+RN+   +IAPT TI+  
Sbjct: 401 LQSGTMQT----MDADVRAAIAEH-----------------GIRNALLTSIAPTGTISLY 439

Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G VS  I+P +   Y +  +  D +     +V+   Q  LW E      K+ D      
Sbjct: 440 AGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVDYAVQ--LWRE------KFGDA----- 486

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
                DL      A  + P+  +   +  QKW+D + S  +   E  S  +   +Y  AW
Sbjct: 487 -----DLPDHFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDISFAEFKDVYMAAW 541

Query: 894 LMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAV-PVTD 930
             G K     R  + T    SV  S  K  + +   V PV++
Sbjct: 542 DQGCKGCTTYRPNAVTGSVLSVSDSATKDSEAEKGEVKPVSE 583


>gi|291614699|ref|YP_003524856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
 gi|291584811|gb|ADE12469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
          Length = 981

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 166/604 (27%), Positives = 269/604 (44%), Gaps = 77/604 (12%)

Query: 323 RVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
           RVA GLA  ET E+  +  E + L     F+ +      +G +    L +CF+  V D +
Sbjct: 69  RVARGLAQAETPEQRAKWEEAFFLAQENGFVPAGRINSAAGLKIQATLINCFVQPVGDAI 128

Query: 381 YG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            G       I+ ALQ+ A   +  GG+G D++ +R  GAH+ GTN ++ G I +++V + 
Sbjct: 129 SGTNDGKPGIYDALQQAAETMRRGGGVGYDFSSIRPEGAHVKGTNSRASGPISYMRVFDR 188

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V   G R+GA    L   H D+E+F+   K+ GD R    + N +  + D  M+ V
Sbjct: 189 SCETVESAGARRGAQMGVLRCDHPDIEKFISA-KDQGDLR----NFNISVGVTDALMQAV 243

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  + L    E S           I      R+ D   I  +RK+ A  LW++++   
Sbjct: 244 EKDEEFELVHSAEPST---------AIKEAGATRREDGKWI--YRKVRATDLWKQIIAST 292

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +  ++ ++N C E  L         C LGSI+L     N
Sbjct: 293 YDHAEPGVLFIDLMNRDNNLSYCEIIEATNPCAEQPL----PPYGCCCLGSIDLTRMVKN 348

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  FDY+     +R AVR+LDNV+D+    + + ++     R IGLG  G   AL 
Sbjct: 349 PFSKHAGFDYEPFKQLVRVAVRMLDNVLDVTAWPLPEQQQEAKNKRRIGLGFTGLGDALV 408

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP-IDSIG 727
           ++ + Y +  A   A +    +   A  ASV+LA ERG              FP +D+  
Sbjct: 409 MMGLRYDTDAARAFASDITRIMRDEAYLASVDLAVERGK-------------FPLLDADK 455

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785
            L+  R        SRLP DE+K +++  G+RNS+ ++IAPT TI  A     S  I+P+
Sbjct: 456 YLSAPR------FASRLP-DEIKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPA 508

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +     D T    + V +   R    +             G++  +P       
Sbjct: 509 FSWFYTRKKRMMDGT-TKDYPVEDHAWRVFKQQG------------GDVSHLPPSF---- 551

Query: 846 ATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            TA EI  +  ++  +    +ID   ++++N+  D P     D +Y +AW  GLK     
Sbjct: 552 VTALEISAIDHMKMVAAVAPYIDTSISKTVNVPADYPYEDFKD-LYTEAWKAGLKGLATY 610

Query: 904 RSRS 907
           R  S
Sbjct: 611 RPNS 614


>gi|222150733|ref|YP_002559886.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119855|dbj|BAH17190.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 701

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 171/667 (25%), Positives = 291/667 (43%), Gaps = 87/667 (13%)

Query: 285 LKYERDFAFE---YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339
           +KY +D  F    Y+     +  Y L  N  +  +E  +   + V++ LA  +  K K+ 
Sbjct: 82  IKYAQDIEFNFASYMSASKFFKDYALKTNDKQQYLEDYKEHVIIVSLYLAKGDVNKAKQL 141

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           +   + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K  G
Sbjct: 142 I---SAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINYIDSTAKQLSKIGG 198

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H D
Sbjct: 199 GVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYD 258

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + L   + 
Sbjct: 259 VLEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFFMFAPHTVEREYGLTLDDL 318

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSPQQ 574
            I  E Y+       I    K +     R+ML ++ +T    G+P++ FKD  N      
Sbjct: 319 NID-EMYDELVANPNIMKKSKDA-----REMLNLIAQTQLQSGYPYLMFKDNANKVHANS 372

Query: 575 HVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLA 622
           ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K  
Sbjct: 373 NIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIV-----NVMESKKFK 427

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            ++ T +  L  V D  +        K+N    ++GLG+M     L    I Y S EA E
Sbjct: 428 DSVHTGMDALTTVSDEADIKNAPGVAKANRELHSVGLGVMNLHGYLAKNQIGYESEEAKE 487

Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----------PIDSIGLL 729
            A      ++F+++  S+E+A ER   ++ F+ S +  G +             D +  L
Sbjct: 488 FAATFFMMLNFYSLQRSMEIAMERNETFADFEKSDYASGKYFDKYVATDFRPKSDKVTAL 547

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E      ++  S   W +LK +V   G+ ++  +AIAPT +I+ +   + S+ P     
Sbjct: 548 FE-----GIDMPSPEDWADLKDKVMKNGLFHAYRLAIAPTQSISYVQNATSSVMP----- 597

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           +V+++++R   +      + +          +  +    + +AF
Sbjct: 598 ----------------IVDQIERRTYGNAETFYPMPF----------LSPETMWFYKSAF 631

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             D M LI+  +  Q+ IDQ  S  L+++ + S ++L  +Y  A   GLK+ YY R++  
Sbjct: 632 NTDQMKLIDLIATIQEHIDQGISTILFVNSDISTRELARLYVYAHHKGLKSLYYTRNK-L 690

Query: 909 TSVEKST 915
            SVE+ T
Sbjct: 691 LSVEECT 697


>gi|28377562|ref|NP_784454.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum WCFS1]
 gi|28270394|emb|CAD63297.1| ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           plantarum WCFS1]
          Length = 721

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 163/674 (24%), Positives = 290/674 (43%), Gaps = 88/674 (13%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DF  +    D    +DF F+ ++     Y +Y L  +     + + F  RVAM       
Sbjct: 75  DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             E  A++  + +    +  +TP+  N+G  R  +L SCFL    DD+  I   +     
Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL
Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H D+  FL  +K   D++ R   ++    +PD F + +  +A   LFSP  V   + 
Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +     +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P
Sbjct: 314 VPFSYVDITKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371

Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+E+      +L    ++         CNLGS N++    +  F    
Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +K N     IGLG MG  +      + Y S EA
Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----------PIDSIG 727
           V+  +     +++  + AS E+A+ER   + +F+ S +  G +             D   
Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTA 544

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L +      +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   + S+ P   
Sbjct: 545 ALFD-----GIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP--- 596

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             ++N +++R    E  I  + Y    + N      D    + +
Sbjct: 597 ------------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQ 891
           A++ D   +I+  +  Q+ +DQ  SL L++                D+ + + L+ +   
Sbjct: 630 AYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNY 689

Query: 892 AWLMGLKTTYYLRS 905
           A+  G+K+ YY+R+
Sbjct: 690 AYRKGIKSIYYIRT 703


>gi|254511074|ref|ZP_05123141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
 gi|221534785|gb|EEE37773.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
          Length = 760

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 157/591 (26%), Positives = 252/591 (42%), Gaps = 88/591 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +      +FY  L  F ++ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARDLARVEDDPAHWEEKFYAALEDFKYLPAGRITAGAGTARQVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEQFITAKS----DPARLRMFNMSVLVTDPFMEAVKADGPW- 211

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             E+ ++           KV++ + A  LW K++   ++   P 
Sbjct: 212 ------------------ELVFDG----------KVYQTVQARDLWNKIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +V  + ++N C E  L         C LGS+NL    A        
Sbjct: 244 VIFIDRINKANNLSYVETIAATNPCGEQPL----PPYGACLLGSVNLARLVAEPFEDAAH 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   + TAVR++DNV+D +   + + +      R IGLG+ G   AL +L + Y 
Sbjct: 300 LDEAALQELVATAVRMMDNVVDASKFPLAEQEAEAQDKRRIGLGVTGLADALLMLGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA    +  +  I+  A  ASV+LA+E+GA+  F                       E
Sbjct: 360 SDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFAA---------------------E 398

Query: 736 LAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
             +   + L  DE ++  ++  G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 399 KYLASGTMLQMDEDVRDAIREHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   Q  +W +   +D +  D  +      P D  K+ A A     
Sbjct: 459 VLQKDGSRTEEEVVDYAVQ--MWRDK-FADKELPDYFVNAQTLSPSDHVKMQAAA----- 510

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
                     QKWID + S  +   E  S      +Y QAW  G K  TTY
Sbjct: 511 ----------QKWIDSSISKTINCPEDISFDAFKDVYMQAWDQGCKGCTTY 551


>gi|83313545|ref|YP_423809.1| ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82948386|dbj|BAE53250.1| Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 781

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 256/596 (42%), Gaps = 87/596 (14%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTT 375
           Q  + RVA  LA  E +       F+  +  F  + +   +  +GT R   L +CF +  
Sbjct: 31  QDTWRRVARSLAAAEADPALWEERFFEAMEDFKLLPAGRIISGAGTDRRVTLFNCFVMGD 90

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +   
Sbjct: 91  IPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMC 150

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             +   G R+GA+ A +   H D+E F+D ++  G    R    N +  + D FM+ V +
Sbjct: 151 RTIMSAGSRRGAMMATMRCDHPDIEAFIDAKREAG----RLRMFNLSVLVTDPFMQAVKE 206

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W                   E+ ++             ++ + A  LW K++   + 
Sbjct: 207 DGPW-------------------ELTFKGV----------TYKSLPARELWNKIMRATYS 237

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
              P + F D  N  +   +   +H++N C E  L +      VC LGS+NL A   +  
Sbjct: 238 YAEPGVIFIDRINRLNNLSYCEEIHATNPCGEQPLPA----YGVCLLGSLNL-ARLVDRP 292

Query: 616 F------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           F      D D+L   +R AVR++DNVID++ + +E+ +      R IGLG+ G   AL L
Sbjct: 293 FEDGARLDLDQLDRLVRVAVRMMDNVIDVSNYPLERHRHEAQAKRRIGLGITGLADALIL 352

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y   +A+ + +  M  I   A  AS ELA+E+GA             FP      L
Sbjct: 353 CGARYGGAQAIRLTETWMAAIRRSAYLASTELAKEKGA-------------FP------L 393

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788
            +    LA      L  D ++  ++  G+RN+   +IAPT TI+     VS  ++P +  
Sbjct: 394 YDAEKYLAGETIQSLDSDVIEA-IRANGIRNALLTSIAPTGTISLFADNVSSGLEPVFAF 452

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            Y +  +  D T                 E  +SD  Y        E  P  L      A
Sbjct: 453 TYTRGVLQKDGTR---------------REEEVSDYAYRLFRRQRGENAP--LPSYFVDA 495

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
             + P   +   +  QK++D + S  + + E  S +    +Y+QA+ +G K  TTY
Sbjct: 496 LSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFESFKDVYQQAYDLGCKGCTTY 551


>gi|76803442|ref|YP_327711.1| ribonucleotide-diphosphate reductase subunit alpha [Natronomonas
           pharaonis DSM 2160]
 gi|76559257|emb|CAI50864.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 564

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 159/579 (27%), Positives = 254/579 (43%), Gaps = 99/579 (17%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  FY+ +S   +  ++P   N G       SCF + + D +  I     E   + K  G
Sbjct: 62  ADRFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDSMESILYTQAEVGEMTKLGG 121

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  G+ I   NGKS G   F ++ +     V+QG  R+G    Y++  H D
Sbjct: 122 GTSGYFGEIRPRGSPIT-NNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDD 180

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EE+L+++                                      D V D++  YG   
Sbjct: 181 LEEWLNIKTEG-----------------------------------DPVQDIY--YG--V 201

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            I  + ++   D  E K          W +++      G P+I F+D  N   PQ +   
Sbjct: 202 IIGDDWFQAMVDGDEEKR-------ETWAEIIEARINIGVPYIIFRDNMNEGKPQVYKDK 254

Query: 579 ---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              +++SNLCTEI L ++ +E+ VC L S+N L H+   + D D + +  R    V++  
Sbjct: 255 GYEINASNLCTEIALPATPDESFVCCLSSMNAL-HYGEWK-DTDAVETLTRFLDAVMEEF 312

Query: 636 IDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           I+    T  +E+  +    HRAIG+G++G+ S L    IP+ S EA++  +E    I   
Sbjct: 313 IEEAEGTQFMERPVRFAKRHRAIGIGVLGWHSYLQSEMIPFDSMEAMKKNEEIFRTIRER 372

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +   S  LA E G     +G                                        
Sbjct: 373 SYEESRRLADEFGEPEVLEG---------------------------------------- 392

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
              G RN+  M++APT + + I G VS SI+P   N +V+       T  N FL   LKQ
Sbjct: 393 --YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKQ 450

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R   +  +   +   DGS+ +++ + D+ K+I  T  EI  M +I  A++RQK+IDQAQS
Sbjct: 451 RGRDEREVWDSIAQQDGSVQHLDCLTDEEKEIFKTFAEIPQMAIINQAAQRQKYIDQAQS 510

Query: 873 LNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           LN+ +D  E S K+++ +Y +AW  G+K+ YY  S +A 
Sbjct: 511 LNISIDPSEVSVKEINQLYIEAWRKGVKSLYYQNSVNAA 549


>gi|257882207|ref|ZP_05661860.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257817865|gb|EEV45193.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
          Length = 719

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 290/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A+ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAM 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+     A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNIFRHYAFHKGIKSIYYVRT 701


>gi|306827105|ref|ZP_07460400.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304430700|gb|EFM33714.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 719

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 158/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSNIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S + D   F     G      D + ++ +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|300769756|ref|ZP_07079638.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300492664|gb|EFK27850.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 721

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 163/672 (24%), Positives = 292/672 (43%), Gaps = 84/672 (12%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DF  +    D    +DF F+ ++     Y +Y L  +     + + F  RVAM       
Sbjct: 75  DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             E  A++  + +    +  +TP+  N+G  R  +L SCFL    DD+  I   +     
Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL
Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H D+  FL  +K   D++ R   ++    +PD F + +  +A   LFSP  V   + 
Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +     ++  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P
Sbjct: 314 VPFSYVDVTKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371

Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+E+      +L    ++         CNLGS N++    +  F    
Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +K N     IGLG MG  +      + Y S EA
Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL---------L 729
           V+  +     +++  + AS E+A+ER   + +F+ S +  G +  D              
Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSY-FDKYTTQDWQPKYDKT 543

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           A + D + +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   + S+ P     
Sbjct: 544 AALFDSIFI--PTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP----- 596

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                           ++N +++R    E  I  + Y    + N      D    + +A+
Sbjct: 597 ----------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKSAY 631

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAW 893
           + D   +I+  +  Q+ +DQ  SL L++                D+ + + L+ +   A+
Sbjct: 632 DTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNYAY 691

Query: 894 LMGLKTTYYLRS 905
             G+K+ YY+R+
Sbjct: 692 RKGIKSIYYIRT 703


>gi|332522761|ref|ZP_08399013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314025|gb|EGJ27010.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 719

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 154/595 (25%), Positives = 263/595 (44%), Gaps = 84/595 (14%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP ++        +E+ IA+   +   
Sbjct: 271 ADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIE-------REYGIAFNYIDITE 323

Query: 530 DRGEIKVFRKISAVALWRKML-----TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              E+    KI+   L  + L      +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 324 KYDELVANPKITKTKLRARDLETEISKLQQESGYPYIINIDTANKTNPID--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+   R L
Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRAL 436

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     ++
Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESVEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    +      + +L   + ++  +P   
Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSKYADGTYFDKYVTGEFVPKSDLVKELFKSHFIPQAS 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +               
Sbjct: 557 DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI--------------- 601

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   
Sbjct: 602 ----EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 QHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|300024266|ref|YP_003756877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526087|gb|ADJ24556.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 809

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 169/597 (28%), Positives = 262/597 (43%), Gaps = 91/597 (15%)

Query: 321 FMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LT 374
           F RVA+  A  E     +++K A  FY  ++ F F  +   L  +GT R+  L +CF L 
Sbjct: 38  FRRVALAAASAEKGGKRQQQKWAGTFYEAMADFGFQPAGRILAGAGTDRNVTLFNCFVLG 97

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + DDL  IF +++E A+  +  GG+G+D++ +R  GA +      + G + F+ V +  
Sbjct: 98  EIADDLSSIFESVKEAALTMQSGGGIGHDFSTLRPRGAPVKSIGADASGPVSFMDVWDAM 157

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              +   G+R+GA+ A L   H D+E F+  +     D +R  + N +  + D FM  V 
Sbjct: 158 CRTIMSAGQRRGAMMATLRCDHPDIEAFIAAKA----DSQRLRNFNLSVLVTDAFMDAVR 213

Query: 495 QNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           ++A W L FS                               KV++ I A ALW +++   
Sbjct: 214 RDAPWDLIFSG------------------------------KVYKTIPARALWDQIMRAT 243

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----- 608
           F+   P + F D  N  +  Q+   + ++N C E  L         C LGSINL      
Sbjct: 244 FDYAEPGVIFIDRINAANNLQYCETISATNPCGEQPL----PPYGACLLGSINLARLVEE 299

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              A    D  KL + + TAVR LDNVIDI+ + + +  +     R IGLG+ G   AL 
Sbjct: 300 PFTATAHVDIAKLEARVATAVRFLDNVIDISRYPVPQQAQEARAKRRIGLGVTGLADALI 359

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +PY S  A E A   M  I   A  AS  LA E+GA+      L+D  V        
Sbjct: 360 FLGLPYGSAAAREQAARWMAIIQNAAYRASAALAAEKGAF-----PLYDANVV------- 407

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQ 787
                  L     +RL  D++++ +   G+RN    +IAPT TI+ + G VS  I+P + 
Sbjct: 408 -------LTRPNITRLD-DDVREAIAANGLRNGCLTSIAPTGTISLLAGNVSSGIEPVFD 459

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ +  +S D        V +   R   D        + D ++         L +   T
Sbjct: 460 FVFRRRVLS-DGGGAEEETVEDFAHRAFRD-------AFGDDAV---------LPEAFVT 502

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
           A  + P   +   +  Q ++D A S  +   E  S +    IY +A+  GLK  TTY
Sbjct: 503 AETLTPSEHVAMQATLQPYVDSAISKTINCPEDISFESFRDIYIEAYDSGLKGCTTY 559


>gi|308068542|ref|YP_003870147.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305857821|gb|ADM69609.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 694

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 155/585 (26%), Positives = 268/585 (45%), Gaps = 66/585 (11%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G +R  +L SCFL  + D L  I   L     L+K  GG+  + + +R  G 
Sbjct: 145 ATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRARGE 204

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++G++P LK+  D     +Q G+RKG+  AY   +  DV EFLD +K   D+
Sbjct: 205 AIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADE 264

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R R   ++    +P+ F K    N    +F+P  V   +  +  +  +  E Y+      
Sbjct: 265 RVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDMNLD-EMYDTLLADD 323

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLN 591
            +K    +SA  +  K+  +  E+G+P+I  K   N     ++VG V  SNLCTEI  L 
Sbjct: 324 RVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQVKMSNLCTEIFQLQ 383

Query: 592 SSSEET-----------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-- 638
            +SE T             CNL S+N++     N  ++ K+  ++   +  L +V D+  
Sbjct: 384 ETSEITDYGQQDTIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGMIALTSVSDMTQ 438

Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N   + KA +  H+   +GLG+M          I Y S EA +        +++H+I 
Sbjct: 439 VANAPGVAKANREMHS---VGLGVMNLHGYFAKNKIAYESNEAKDFVRTFFMTMNYHSIE 495

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLPWDEL 749
            S+E+A+  G ++  F+ S +  GV+       D   + A V++    +   +   WD+L
Sbjct: 496 KSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPITARVQELFKGIYVPTSADWDKL 555

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K  V   G+ ++  MAIAPTA+I+ I   + S+ P                     +V +
Sbjct: 556 KADVMKNGLYHAYRMAIAPTASISYIQNATSSVMP---------------------IVEQ 594

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           ++ R   +      + Y          +  D    + +A+++D   +++  +  Q  +DQ
Sbjct: 595 IETRTYANSTTYYPMPY----------LQKDNLFFYKSAYQMDQFKVLDLIAEIQPHVDQ 644

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             S  L+++ + + ++L   Y  A   GLK+ YY R++   SVE+
Sbjct: 645 GISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKK-LSVEE 688


>gi|171779439|ref|ZP_02920403.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282056|gb|EDT47487.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 718

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 169/662 (25%), Positives = 286/662 (43%), Gaps = 82/662 (12%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           D  Y   F F+ ++     Y++Y +  N S+  + + F  R               A + 
Sbjct: 81  DFAYNYGFEFKSFMAAYKFYNQYAMKTNDSKYYL-ENFEDRAVFNALYLANGDRNLAHKI 139

Query: 343 YNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G
Sbjct: 140 LEELISQRYQPATPTFLNAGKKRRGEMVSCFLIDIEDSMLSIGRNINSALQLSRIGGGVG 199

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ E
Sbjct: 200 VNLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILE 259

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL  +K   D++ R   ++    +PD + + +  N    LF+P  V  ++ +     ++ 
Sbjct: 260 FLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFNPYHVERVYGIPFSYVDLT 319

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+   D  EI+    I+A  L +++  +  E+G+P+I   D  N  +P +  G +  
Sbjct: 320 KE-YDTMVDNDEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIM 375

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI        LN       V     CNLGS+N++    +  F       +I  A+
Sbjct: 376 SNLCSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMVNLIKSKDF-----GKSIEYAI 430

Query: 630 RVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D    + +      N  +  IGLG MG  + L L  I Y S EA+E  D    
Sbjct: 431 RALTTVTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFL 490

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSR 743
            ++++++ AS ++A E+   +  F+ S +  G     +        +E   ++  N    
Sbjct: 491 AMNYYSLKASHQIAVEKNETFHDFENSRYADGSHFDYYLAKEFHFTSEKVAKIFENIL-- 548

Query: 744 LP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           LP    W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +          
Sbjct: 549 LPTIEDWQLLKEDVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---------- 598

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  +  + Y    + N         K + TA+ +D   +I+ 
Sbjct: 599 ---------ENRQ-----EKKVGSIFYPAPYLSN------KTLKYYKTAYNMDQRKIIDI 638

Query: 860 ASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGLKTTYYL 903
            ++ Q+ IDQ  SL L++    P G              + L+ +   AW  G+K+ YY+
Sbjct: 639 YAKAQQHIDQGMSLTLFMRSVLPEGIYEWKKQGSSKLTTRDLNRLRNYAWTKGIKSLYYV 698

Query: 904 RS 905
           R+
Sbjct: 699 RT 700


>gi|288904914|ref|YP_003430136.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
 gi|288731640|emb|CBI13197.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
          Length = 719

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 171/689 (24%), Positives = 299/689 (43%), Gaps = 91/689 (13%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHING 311
           PE+  +Y  + +++              LA DL+  + F F+ ++     Y +Y L  N 
Sbjct: 68  PEFISKYTPDFIES--------------LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTND 112

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370
            +  + ++   R+           E+ A +    +    +  +TP+  N+G +R  +  S
Sbjct: 113 GKYYL-ESIEDRILFNALYFADGNEELARDLATEMIHQRYQPATPSFLNAGRSRRGEFVS 171

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL +V DD+  I  ++     L++  GG+G   + +R  GA I G  G + GV+P +K+
Sbjct: 172 CFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKL 231

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R+GA   YL+ +H D+  FL  +K   D++ R   ++    +PD F 
Sbjct: 232 FEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKENADEKIRVKTLSLGITVPDKFY 291

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LFSP  V   + +     +I  E  +  A+   +K   KI A  L  ++ 
Sbjct: 292 ELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVANPNIVKT--KIRARDLETEIS 349

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV---- 599
            +  E+G+P++   D  N  +P    G +  SNLC+E+        +N + E   +    
Sbjct: 350 KLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVLQVQTPSVINDAQEFVKMGTDI 407

Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657
            CNLGS N++     N  D      +I+   R L  V D +    +   K  N      G
Sbjct: 408 SCNLGSTNVV-----NMMDSPDFGRSIKAMTRALTFVSDTSSIEAVPTIKHGNEQAHTFG 462

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG MG  + L   HI Y SPE++E  +     +++  +  S  +A+ER   +  F+ S +
Sbjct: 463 LGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESNHIARERQQTFVGFENSKY 522

Query: 717 DQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770
             G +    I G      D +  +     +P    W +L+  V T G+ + N +A+AP  
Sbjct: 523 ADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNG 582

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I  VS S+ P  Q +                   E +Q     E  I  + Y    
Sbjct: 583 SISYINDVSASLHPITQRI-------------------EERQ-----EKKIGKIYYPAAG 618

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882
           + + + IP      + +A+++D   +I+  +   + +DQ  SL L+L  D P G      
Sbjct: 619 L-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSDIPQGLYEWKT 672

Query: 883 ------KKLDFIYRQAWLMGLKTTYYLRS 905
                 + L  +   A+  G+K+ YY+R+
Sbjct: 673 QSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|261209283|ref|ZP_05923675.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567002|ref|ZP_06447403.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|294615273|ref|ZP_06695150.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
 gi|260076829|gb|EEW64564.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161203|gb|EFD09102.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|291591870|gb|EFF23502.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
          Length = 719

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 166/657 (25%), Positives = 291/657 (44%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E+ F+F+ ++     Y +Y L  N     + + +  RVA          E+ A+   + +
Sbjct: 88  EQHFSFKSFMAAYKFYSQYALKTNDGSAYL-ETYEDRVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  +KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DHLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANRENPID--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N   E   +     CNLGS N++     N         ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMQSPNFGQSVRTMTRALT 437

Query: 634 NVIDIN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + D +       I+   K NHT   IGLG MG  + L    + Y S ++++  +     
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHT---IGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP- 745
           +++  +  S  +A ER   + +F+ S +  G +    +    + + E   A+     +P 
Sbjct: 495 LNYWTLVESNNIACERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPT 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P                  
Sbjct: 555 AEDWNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHP------------------ 596

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +   +++R    E  I  + Y    + N E IP      + +A+++D   +I+  + 
Sbjct: 597 ---ITRMIEER---QEKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAT 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            Q+ +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 645 AQQHVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|327489433|gb|EGF21226.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1058]
          Length = 719

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 174/653 (26%), Positives = 281/653 (43%), Gaps = 76/653 (11%)

Query: 289 RDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           +DF F+ ++     Y++Y L  N     + ++   RV           E  A +  N + 
Sbjct: 89  QDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEII 147

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  +  E
Sbjct: 268 KENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDITEKYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNITKT--KIKARDLETEISKLQQESGYPYVVNIDTANRSNPID--GKIVMSNLCS 383

Query: 587 EI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI        LN + E         CNLGS N++    +  F       +IRT  R L  
Sbjct: 384 EILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTF 438

Query: 635 VIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +  T +      N      GLG MG  S L    I Y S EAVE        +++ 
Sbjct: 439 VTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYW 498

Query: 694 AISASVELAQERGA-YSSFKGSLWDQGV-FPIDSIGLLAEVRDEL-----AMNRTSRLPW 746
            +  S  +A+ER   + +F+ S +  G  F     G      D +      +   S   W
Sbjct: 499 TLVESNNIARERRVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +                 
Sbjct: 559 AELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI----------------- 601

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             E +Q     E  I  + Y    + + E IP      + +A+++D   +I+  +   + 
Sbjct: 602 --EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|293365330|ref|ZP_06612047.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
 gi|291316780|gb|EFE57216.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
          Length = 719

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 174/660 (26%), Positives = 290/660 (43%), Gaps = 88/660 (13%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y S E+VE        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGLLAEVRDELAMN 739
           +++  +  S  +A+ERG  + +F+      GS +D+   G F   S  +    +D    +
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +          
Sbjct: 555 ATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI---------- 601

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                    E +Q     E  I  + Y    + + + IP      + +A+++D   +I+ 
Sbjct: 602 ---------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|18653875|ref|NP_570809.1| large ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494973|gb|AAD21395.1| large ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 788

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 189/741 (25%), Positives = 307/741 (41%), Gaps = 104/741 (14%)

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327
           HE+ +D  L        Y       YL     YD Y L   GS    E     FMRVA+ 
Sbjct: 96  HEAALDGLLQDFKQSKAYTNFVNCGYLSAVRFYDTYVLRTQGSSPIFESVAQMFMRVAVF 155

Query: 328 LA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHPQL 368
           +A        L+ET     E E    E Y +  +FH++      C+TP L ++G R  QL
Sbjct: 156 VACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGGQL 215

Query: 369 SSCFL---TTVPDDLYGIFGALQE--NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           SSCF+   +   +D      AL E  + +LA  SG +G D   V     H        + 
Sbjct: 216 SSCFILKPSMATED--KTLKALHEEMSPLLASKSG-VGID---VSSFAEH--------KN 261

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +   LK+ N      N    R     AY+E WH  + +FL+ +    +++ R H++    
Sbjct: 262 ITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGV 319

Query: 484 WIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            +P+LF +    N    W LF+P+   +L  LYG EFEI    Y R    G  K    + 
Sbjct: 320 CVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLP 374

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVC 600
             ++   ++  + +TG P++  K+  N     +  G  ++ SNLC EI +     + +VC
Sbjct: 375 LKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVC 433

Query: 601 NLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           NL +I+L                  +  F ++ L   +  AV +++  I       E  +
Sbjct: 434 NLANISLPKCLRPHRGESGVEPGKGDVTFGFELLDDAVEAAVIIVNACILGGTAPTESVR 493

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE--LAQER 705
           +     R++G+G+ G       L   Y   E+ ++  E  + + F A+  S E  L  E 
Sbjct: 494 RGQE-ERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMYFTAVQTSHEIVLLGEG 552

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             +  ++ S   QGVF         +  D +  +      W++L + +   G+ NS  +A
Sbjct: 553 TPFRGWERSRLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQFLA 605

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PTA  + + G +++  P + N+  K     +    N      +K  DL        ++
Sbjct: 606 LMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------RTVR 659

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            + G + +      D  KI  TAF+  P+  +E A  R  ++DQ+QSLN +L E    + 
Sbjct: 660 RYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQATRA 719

Query: 886 DFI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLG 939
            +I       + +GLKT  YY R      ++K T      KLNA+   D     +  S G
Sbjct: 720 SYIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLDQVVGDNISSEG 767

Query: 940 IPSSCTSDTE------CEVCQ 954
             S+C    +      C  CQ
Sbjct: 768 AESNCVQKADGERTKVCLACQ 788


>gi|89070843|ref|ZP_01158088.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
 gi|89043581|gb|EAR49790.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
          Length = 761

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 159/594 (26%), Positives = 259/594 (43%), Gaps = 94/594 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +      +FY  L  F F+ +      +GT R   L +CF + TVPD +
Sbjct: 37  RIARALASVEADPAAWEPKFYAALEDFRFLPAGRITAGAGTDRSVTLFNCFVMGTVPDTM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAPVAGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE+F++ +     D  R    N +  + D FM+ V  +A W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEQFIEAKS----DPARLRMFNMSVLVTDPFMEAVKADADWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L            +G E                  VFR + A  LW +++   ++   P 
Sbjct: 213 L-----------TFGGE------------------VFRTVRARELWDRIMRSTYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + F D  N  +   +   + ++N C E  L         C LGSINL    A        
Sbjct: 244 VIFIDRINEMNNLAYCETIAATNPCGEQPL----PPYGACLLGSINLARLVAEPFAEGAS 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   + TAVR++DNV+D +   + +  +     R IGLG+ G   AL ++   Y 
Sbjct: 300 LDEAALDELVATAVRMMDNVVDASRFPLPQQAEEARNKRRIGLGVTGLADALLMVGQRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  + +  M+ I+  A  AS +LA E+GA+  F+         P  + G +A++   
Sbjct: 360 SEEAAALTEAWMKRIARAAYLASADLAAEKGAFPLFQAE-------PYLASGTMAQMD-- 410

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
                      D+++  +   G+RN+   ++APT TI+   G VS  I+P +   Y +  
Sbjct: 411 -----------DDVRAAIAEKGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAFAYNRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D +     +V+   Q  LW E           + G+ E     L      A  + PM
Sbjct: 460 LQKDGSRTEEEVVDYAVQ--LWRE-----------TRGDAE-----LPAHFVNAQTLAPM 501

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901
             +   +  QKW+D   S++  ++ P+   +DF     +Y +A+  G K  TTY
Sbjct: 502 DHVRMQAAAQKWVD--SSISKTINVPA--DIDFESFKDVYMEAYETGCKGCTTY 551


>gi|254555735|ref|YP_003062152.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308179715|ref|YP_003923843.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|254044662|gb|ACT61455.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308045206|gb|ADN97749.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 721

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 163/674 (24%), Positives = 290/674 (43%), Gaps = 88/674 (13%)

Query: 275 DFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
           DF  +    D    +DF F+ ++     Y +Y L  +     + + F  RVAM       
Sbjct: 75  DFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFAD 133

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             E  A++  + +    +  +TP+  N+G  R  +L SCFL    DD+  I   +     
Sbjct: 134 GNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQ 193

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL
Sbjct: 194 LSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYL 253

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +H D+  FL  +K   D++ R   ++    +PD F + +  +A   LFSP  V   + 
Sbjct: 254 SVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYG 313

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +     +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P
Sbjct: 314 VPFSYVDITKE-YDNMVKNPNIRK-TKIKARDLENEISKLQQESGYPYVVNIDTANRENP 371

Query: 573 QQHVGVVHSSNLCTEI------TLNSSSEE------TAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+E+      +L    ++         CNLGS N++    +  F    
Sbjct: 372 ID--GKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF---- 425

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++   VR L  V D  N   +   +K N     IGLG MG  +      + Y S EA
Sbjct: 426 -GHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEA 484

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----------PIDSIG 727
           V+  +     +++  + AS E+A+ER   + +F+ S +  G +             D   
Sbjct: 485 VDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTT 544

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L +      +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   + S+ P   
Sbjct: 545 ALFD-----GIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHP--- 596

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
                             ++N +++R    E  I  + Y    + N      D    + +
Sbjct: 597 ------------------IINRVEER---QEKKIGKIYYPAPYLSN------DTINYYKS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQ 891
           A++ D   +I+  +  Q+ +DQ  SL L++                D+ + + L+ +   
Sbjct: 630 AYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNY 689

Query: 892 AWLMGLKTTYYLRS 905
           A+  G+K+ YY+R+
Sbjct: 690 AYRKGIKSIYYIRT 703


>gi|325977863|ref|YP_004287579.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177791|emb|CBZ47835.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 719

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 168/661 (25%), Positives = 291/661 (44%), Gaps = 77/661 (11%)

Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           LA DL+  + F F+ ++     Y +Y L  N  +  + ++   R+           E+ A
Sbjct: 82  LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTNDGKYYL-ESIKDRILFNALYFADGNEELA 139

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +    +    +  +TP+  N+G +R  +  SCFL +V DD+  I  ++     L++  G
Sbjct: 140 RDLATEMIHQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGG 199

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D
Sbjct: 200 GVGISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPD 259

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FL  +K   D++ R   ++    +PD F +    N    LFSP  V   + +     
Sbjct: 260 IMAFLSTKKENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYV 319

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +I  E  +  A+   +K   KI A  L  ++  +  E+G+P++   D  N  +P    G 
Sbjct: 320 DITAEYDKMVANPNIVKT--KIRARDLETEISKLQQESGYPYVVNIDTANRTNPID--GK 375

Query: 579 VHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+E+        +N + E   +     CNLGS N++    +  F       +I+
Sbjct: 376 IIMSNLCSEVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIK 430

Query: 627 TAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              R L  V D +    +   K  N      GLG MG  + L   HI Y SPE++E  + 
Sbjct: 431 AMTRALTFVSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNI 490

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTS 742
               +++  +  S  +A+ER   + SF+ S +  G +    I G      D +  +    
Sbjct: 491 YFMLMNYWTLVESNHIARERKQTFVSFENSKYADGSYFDKYITGEFVPKSDRVKELFAEH 550

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            +P    W +L+  V T G+ + N +A+AP  +I+ I  VS S+ P  Q +         
Sbjct: 551 FIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI--------- 601

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                     E +Q     E  I  + Y    + + + IP      + +A+++D   +I+
Sbjct: 602 ----------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVID 640

Query: 859 SASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLR 904
             +   + +DQ  SL L+L  D P G            + L  +   A+  G+K+ YY+R
Sbjct: 641 VYAAATEHVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIR 700

Query: 905 S 905
           +
Sbjct: 701 T 701


>gi|307703870|ref|ZP_07640811.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
 gi|307622705|gb|EFO01701.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
          Length = 623

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 166/611 (27%), Positives = 271/611 (44%), Gaps = 86/611 (14%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A +  N +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 40  EAIATDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLS 99

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 100 RIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 159

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + + 
Sbjct: 160 FHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVP 219

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I  E Y+       I+   KI A  L  ++  +  E+G+P++   D  N  +P  
Sbjct: 220 FNYIDIT-EKYDELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD 277

Query: 575 HVGVVHSSNLCTEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI        +N + E         CNLGS N++    +  F      
Sbjct: 278 --GKIIMSNLCSEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----G 330

Query: 623 STIRTAVRVLDNVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +IR  VR L  V D    +   TI+      HT    GLG MG  S L    I Y S E
Sbjct: 331 RSIRAMVRALTFVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSAE 387

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFK------GSLWDQ---GVFPIDSIGL 728
           +VE        +++  +  S  +A+ERG  + +F+      GS +D+   G F   S  +
Sbjct: 388 SVEFTSIYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRV 447

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
               +D    + T    W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q 
Sbjct: 448 KELFKDVFIPSATD---WAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQR 504

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +                   E +Q     E  I  + Y    + + + IP      + +A
Sbjct: 505 I-------------------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSA 534

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWL 894
           +++D   +I+  +   + +DQ  SL L++  D P G            + L  +   A+ 
Sbjct: 535 YDMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFN 594

Query: 895 MGLKTTYYLRS 905
            G+K+ YY+R+
Sbjct: 595 KGIKSIYYVRT 605


>gi|74316076|ref|YP_313816.1| ribonucleoside-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055571|gb|AAZ96011.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 600

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 161/607 (26%), Positives = 272/607 (44%), Gaps = 70/607 (11%)

Query: 318 QAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF- 372
           +A + RVA  +A  + E + RA+    FY LL  F F+     L  +G+ H   L +CF 
Sbjct: 29  RASWQRVAQAVA--QAEVDARALWADRFYALLDDFRFLPGGRILAGAGSGHRVTLFNCFV 86

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  + DD+  IF AL+E A+  ++ GG+G D++ +R  G     T   + G + F+ + +
Sbjct: 87  MGEIADDIEDIFEALKEGALTMQHGGGVGYDFSTLRPAGTIAQATGTIASGPVSFMHIWD 146

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                V   G R+GA+ A L   H D+E F+D +++    R      N +  + D F+  
Sbjct: 147 AMCATVLSTGARRGAMMATLRCDHPDIEAFVDAKRDPAVLRH----FNLSVQVSDAFIAA 202

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A W L  P     L D    +  +   ++         +V R + A ALW+++L  
Sbjct: 203 VDADADWPLVFP-----LRDGEPADGAVVRRHWTGSTTAVPCRVLRTVRARALWQRILRA 257

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++T  P + F D  N  +       + ++N C EI L +       C+LGS+NL A F 
Sbjct: 258 AYDTAEPGVLFVDTINRDNTLAGRETLTTTNPCGEIPLPAYG----ACDLGSLNLTA-FV 312

Query: 613 NNQFDYDKLASTIRTA------VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
              F  D               VR LD+VID++ + ++   +     R IGLG+ G   A
Sbjct: 313 VAPFAADARLDLAALGDAAALAVRFLDDVIDVSRYPLQAQAREARFKRRIGLGITGLADA 372

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L LL + Y S  A ++A+ +M  +   A  AS++LA+E+G + + + S +          
Sbjct: 373 LVLLGLDYDSEPARQLAERAMRTVRDAAYRASIDLAREKGGFPALERSAF---------- 422

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPS 785
                    LA     RLP  E++  +   G+RNS+ +AIAP  TI+ +   +S  I+P 
Sbjct: 423 ---------LASGFAGRLP-PEIRDGIARDGIRNSHLLAIAPAGTISLLANNLSSGIEPI 472

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +     +  +  D            +   + D A +  L    G +G     P  L +  
Sbjct: 473 FAAEASRRILQPD---------GSYRSHAVSDYACL--LWRAHGGVGQ----PPALVE-- 515

Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
             A ++DP+  +   +  Q  +D A  +++N+  D  +  + + +YRQA  +GLK     
Sbjct: 516 --AQQLDPVAHLAMQAALQPAVDNAISKTINVAADI-AFARFEALYRQAHALGLKGCTVF 572

Query: 904 RSRSATS 910
           R    T 
Sbjct: 573 RPNPVTG 579


>gi|293570203|ref|ZP_06681273.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609716|gb|EFF38976.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 718

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 98/608 (16%)

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + 
Sbjct: 143 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EFL 
Sbjct: 203 SNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLS 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E 
Sbjct: 263 TKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE- 321

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+   D GEI+    I+A  L +++  +  E+G+P+I   D  N  +P +  G +  SNL
Sbjct: 322 YDTMVDNGEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIMSNL 378

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        LN       V     CNLGS+N++     N  +      +I  A+R L
Sbjct: 379 CSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRAL 433

Query: 633 DNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             + D    + +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++
Sbjct: 434 TTITDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNSIDYESDEALEFVDAFFLAMN 493

Query: 692 FHAISASVELAQERG------AYSSFK-GSLWD-----------QGVFPIDSIGLLAEVR 733
           ++++ AS ++A E+        YS +  GS +D           + V  I    LL  + 
Sbjct: 494 YYSLKASHQIAIEKNETFHNFEYSRYADGSYFDYYLAKEFHFTSEKVAKIFENILLPTIE 553

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D           W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +    
Sbjct: 554 D-----------WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---- 598

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                          E +Q     E  +  + Y    + N         + + TA+ +D 
Sbjct: 599 ---------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQ 632

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGL 897
             +I+  ++ Q+ IDQ  SL L++    P G              + L+ +   AW  G+
Sbjct: 633 RKIIDIYAKAQQHIDQGMSLTLFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGI 692

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 693 KSLYYVRT 700


>gi|219682806|ref|YP_002469189.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219620456|gb|ACL28613.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178105|gb|ADC85351.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 708

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 182/702 (25%), Positives = 292/702 (41%), Gaps = 94/702 (13%)

Query: 252 YPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           Y EY  F +Y  E + A   H   +           K+ R +A     L+     ++L  
Sbjct: 60  YYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYA-----LKTFDGEHYLE- 113

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQL 368
                + PQ      A+ LAL + + E  A+   + +    F  +TPT  N G  +  + 
Sbjct: 114 -----DFPQ---RAAAVSLALADGD-EPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 164

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GV+P +
Sbjct: 165 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 224

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   +     IPD+
Sbjct: 225 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 284

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +     LFSP +V  ++ +   +  +  +  E  AD    K F  I A   +  
Sbjct: 285 TFELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEMLADDRIRKTF--IDAREFFTT 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI L      T           
Sbjct: 343 LAEIQFESGYPYLLFEDTANAANPID--GRITMSNLCSEI-LQVQEPSTYYEDLSYAHVG 399

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
               CNLGS+N+             LA  + TA+R L  V    +   +    ++N    
Sbjct: 400 RDVSCNLGSLNIARAMDAG------LAGPVETAIRALTAVSQHTHIGAVPSIARANEEGH 453

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713
           AIGLG M     L    I Y SPEA++  +   E ++FHA  AS  LA E G A++ F  
Sbjct: 454 AIGLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFAD 513

Query: 714 SLW-----DQGVF------PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGM 758
           S +     D   F       +D+      VR  L      R+P    W EL+  +   G+
Sbjct: 514 SAYARQPSDGNYFDKYLDGSLDTEPRTGTVR-ALFERFGVRIPTARDWRELQGEILRDGI 572

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWD 817
            N    A+ PT +I+ I   + SI P    + + K    G       ++ N+    DL+D
Sbjct: 573 YNQYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND--NLDLYD 630

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +                             A+EI    ++++ +     +DQ  SL L+ 
Sbjct: 631 D-----------------------------AYEIGWKAIVDTYAEATPHVDQGLSLTLFF 661

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            D  + + L+     AW  G+KT YY+R R   ++E + + G
Sbjct: 662 PDTVTTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAG 702


>gi|290889637|ref|ZP_06552727.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
 gi|290480835|gb|EFD89469.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
          Length = 723

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 154/605 (25%), Positives = 274/605 (45%), Gaps = 86/605 (14%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR 
Sbjct: 153 FQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVRE 212

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K  
Sbjct: 213 AGASVMGLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKEN 272

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527
            D++ R   ++    +PD F +   +     LFSP   +D+  +YG  F      + Y+ 
Sbjct: 273 ADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+E
Sbjct: 330 MVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCSE 386

Query: 588 IT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633
           I        +N+  E T +     CNLGSIN+  + H A    D+ K   T+  A+  + 
Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFVS 442

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
              DI+   +   +  N    AIGLG MG  + L    I Y    A++  +      +++
Sbjct: 443 ESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYY 500

Query: 694 AISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP--- 745
            + AS ++A+ERG ++  F+ S +  G     + +   G   +   +L  +    +P   
Sbjct: 501 TLLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDY--HVPTIE 558

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK+ V   G+ N+   A+APT +I+ +   + S+ P                    
Sbjct: 559 DWQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP-------------------- 598

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +V+ ++ R    E M   + Y    + N E +P      + +A+++D   +I++ +  Q
Sbjct: 599 -IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ + 
Sbjct: 649 EHVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTD 708

Query: 909 TSVEK 913
            + E+
Sbjct: 709 DNTEQ 713


>gi|23015529|ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 775

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 159/591 (26%), Positives = 256/591 (43%), Gaps = 87/591 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           RVA  LA  E E       F+  +  F  + +   +  +GT R   L +CF +  +PDD+
Sbjct: 36  RVARSLAATEAEPAVWEQRFFESMEDFKVLPAGRIISGAGTDRKVTLFNCFVMGDIPDDM 95

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 96  AGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMS 155

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+D ++  G    R    N +  + D FM+ V ++  W 
Sbjct: 156 AGSRRGAMMATMRCDHPDIEAFIDAKREAG----RLRMFNLSVLVTDPFMQAVKEDGPW- 210

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             E+ ++             ++ + A  LW K++   +    P 
Sbjct: 211 ------------------ELTFKGV----------TYKSLPARELWNKIMRATYSYAEPG 242

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   +H++N C E  L +      VC LGS+NL A   +  F    
Sbjct: 243 VIFIDRINRLNNLSYCEDIHATNPCGEQPLPA----YGVCLLGSLNL-ARLVDRPFEDGA 297

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D DKL   +R AVR++DNVID++ + +++ +    + R IGLG+ G   AL L    Y
Sbjct: 298 RLDLDKLDRLVRVAVRMMDNVIDVSNYPLDRHRHEALSKRRIGLGITGLADALILCGARY 357

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
              EA+ + +  M  I   A  AS ELA+E+GA             FP      L +   
Sbjct: 358 GGREAIRLTETWMAAIRRSAYLASAELAREKGA-------------FP------LYDAEK 398

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKS 793
            LA      L  D ++  ++T G+RN+   +IAPT TI+     VS  ++P +   Y + 
Sbjct: 399 YLAGETIQGLDSDVIEA-IRTHGIRNALLTSIAPTGTISLFADNVSSGLEPVFAFTYTRG 457

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D T           +R    E  +SD  Y        E  P  L      A  + P
Sbjct: 458 VLQRDGT-----------RR----EEEVSDYAYRLFRRLRGENAP--LPTYFVDALSLTP 500

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
              +   +  QK++D + S  + + E  S      +Y QA+ +G K  TTY
Sbjct: 501 GDHVVMQAAVQKYVDSSISKTINVPEDISFDAFKDVYTQAYELGCKGCTTY 551


>gi|183601892|ref|ZP_02963261.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190382|ref|YP_002967776.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195788|ref|YP_002969343.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218777|gb|EDT89419.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248774|gb|ACS45714.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250342|gb|ACS47281.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793369|gb|ADG32904.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 698

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 182/702 (25%), Positives = 292/702 (41%), Gaps = 94/702 (13%)

Query: 252 YPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           Y EY  F +Y  E + A   H   +           K+ R +A     L+     ++L  
Sbjct: 50  YYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYA-----LKTFDGEHYLE- 103

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQL 368
                + PQ      A+ LAL + + E  A+   + +    F  +TPT  N G  +  + 
Sbjct: 104 -----DFPQ---RAAAVSLALADGD-EPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GV+P +
Sbjct: 155 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   +     IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +     LFSP +V  ++ +   +  +  +  E  AD    K F  I A   +  
Sbjct: 275 TFELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEMLADDRIRKTF--IDAREFFTT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI L      T           
Sbjct: 333 LAEIQFESGYPYLLFEDTANAANPID--GRITMSNLCSEI-LQVQEPSTYYEDLSYAHVG 389

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
               CNLGS+N+             LA  + TA+R L  V    +   +    ++N    
Sbjct: 390 RDVSCNLGSLNIARAMDAG------LAGPVETAIRALTAVSQHTHIGAVPSIARANEEGH 443

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKG 713
           AIGLG M     L    I Y SPEA++  +   E ++FHA  AS  LA E G A++ F  
Sbjct: 444 AIGLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFAD 503

Query: 714 SLW-----DQGVF------PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGM 758
           S +     D   F       +D+      VR  L      R+P    W EL+  +   G+
Sbjct: 504 SAYARQPSDGNYFDKYLDGSLDTEPRTGTVR-ALFERFGVRIPTARDWRELQGEILRDGI 562

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWD 817
            N    A+ PT +I+ I   + SI P    + + K    G       ++ N+    DL+D
Sbjct: 563 YNQYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND--NLDLYD 620

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +                             A+EI    ++++ +     +DQ  SL L+ 
Sbjct: 621 D-----------------------------AYEIGWKAIVDTYAEATPHVDQGLSLTLFF 651

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            D  + + L+     AW  G+KT YY+R R   ++E + + G
Sbjct: 652 PDTVTTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAG 692


>gi|322412097|gb|EFY03005.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 719

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 161/609 (26%), Positives = 267/609 (43%), Gaps = 78/609 (12%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           ET  +  A+E  N      +  +TP+  N+G +R  +L SCFL  V DD+  I  ++   
Sbjct: 136 ETLAKDLAIEMINQ----RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSA 191

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L++  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   
Sbjct: 192 LQLSRIGGGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVV 251

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   
Sbjct: 252 YLNVFHPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKE 311

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +     +I     E  A+    K   KI A  L  ++  +  E+G+P+I   D  N  
Sbjct: 312 YGIPFNYLDITNMYDELVANPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKA 369

Query: 571 SPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI        +N + E   +     CNLGS N+L    +  F  
Sbjct: 370 NPID--GKIIMSNLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-- 425

Query: 619 DKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I+T  R L  V D  +   +   K  N      GLG MG  S L   HI Y SP
Sbjct: 426 ---GRSIKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSP 482

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           E++E  D     +++  +  S  +A+ER   +  F  S +  G +    I      + +L
Sbjct: 483 ESIEFTDIYFMLMNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYITGQFVPKSDL 542

Query: 737 AMN--RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             +  +   +P    W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q + 
Sbjct: 543 VKDLFKNHFIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI- 601

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                             E +Q     E  I  + Y    + + + IP      + +A++
Sbjct: 602 ------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYD 632

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMG 896
           +D   +I+  +   + +DQ  SL L+L               + + + L  +   A+  G
Sbjct: 633 MDMRKVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKG 692

Query: 897 LKTTYYLRS 905
           +K+ YY+R+
Sbjct: 693 IKSIYYIRT 701


>gi|302879218|ref|YP_003847782.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
 gi|302582007|gb|ADL56018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
          Length = 942

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 167/605 (27%), Positives = 269/605 (44%), Gaps = 79/605 (13%)

Query: 323 RVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA GLAL E + ++RA   E + L     F+ +      +G      L +CF+  V D 
Sbjct: 28  RVARGLALAE-KPDQRAHWEEAFYLAQENGFVPAGRINSAAGLAIQATLINCFVQPVGDA 86

Query: 380 LYGI-------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + GI       + ALQ+ A   +  GG+G D++ +R  GA + GTN ++ G I +++V +
Sbjct: 87  ISGITDGKPGIYDALQQAAETMRRGGGVGYDFSTIRPEGALVKGTNSRASGPISYMRVFD 146

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H D+E+F+   K+ GD R    + N +  + D  M+ 
Sbjct: 147 RSCETVESAGARRGAQMGVLRCDHPDIEKFISA-KDKGDLR----NFNISVGVTDALMQA 201

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +           SD   ++  E   A  +           ++R++ A  LWR+++  
Sbjct: 202 VEAD-----------SDFELVHTAEPAAALRDAGATQRADGRWIYRRVRATDLWRQIIES 250

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P + F D  N  +   +  V+ ++N C E  L         C LGSINL     
Sbjct: 251 TYDHAEPGVLFIDLMNRDNNLSYCEVIEATNPCAEQPL----PPYGCCCLGSINLTRMVK 306

Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           N       FDY+     I+ AVR+LDNV+D+    + + +      R IGLG  G   AL
Sbjct: 307 NPFSTHAGFDYEPFKQLIKVAVRMLDNVLDVTAWPLPEQQLEAQNKRRIGLGYTGLGDAL 366

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L + Y + EA   A +    +   A +AS+EL++ERGA             FP     
Sbjct: 367 VMLGLRYDTEEARAFAADITRIMRDEAYAASIELSKERGA-------------FP----- 408

Query: 728 LLAEVRDELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDP 784
            L +    LA  R  SRLP DE+K  ++  G+RNS+ ++IAPT TI  A     S  I+P
Sbjct: 409 -LLDAEHYLAAPRFASRLP-DEMKNHIREYGIRNSHLLSIAPTGTISLAFADNASNGIEP 466

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           ++   Y +     D T          K   + D A     +      G++  +P+     
Sbjct: 467 AFSWFYTRKKRMMDGTS---------KDYSVEDHAW----RVFKKQGGDVSHLPEAF--- 510

Query: 845 HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
             +A EI  +  ++  +    +ID   ++++N+  D P  +    +Y +AW  GLK    
Sbjct: 511 -VSALEIPALDHMKMCAAVAPYIDTSISKTVNVPADYPF-EDFKNLYTEAWRAGLKGLAT 568

Query: 903 LRSRS 907
            R  S
Sbjct: 569 YRPNS 573


>gi|320450284|ref|YP_004202380.1| ribonucleoside-diphosphate reductase subunit alpha [Thermus
           scotoductus SA-01]
 gi|320150453|gb|ADW21831.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermus
           scotoductus SA-01]
          Length = 556

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 168/588 (28%), Positives = 250/588 (42%), Gaps = 106/588 (18%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           T  E  + +F   ++   +  +TP   N G +     SC+ T V DD   I  A+ E  M
Sbjct: 48  TRIEGFSRKFQEYMAKGWYSLATPIWANYGLKRGLPISCYGTYVEDDTASILRAVAEIGM 107

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++K  GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL
Sbjct: 108 MSKQGGGTSVYLGALRPRGAPIR-DNGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYL 166

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+EE+  +++  G+             I  LF   V+    W             
Sbjct: 167 PIEHPDLEEWFKIQREGGE-------------IQSLFWG-VSVGDAWL------------ 200

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
               E  IA +  +R+                 W K+L    E G P+I F+D  N ++P
Sbjct: 201 ----EEAIAGDREKRER----------------WAKVLKSRTEVGIPYIFFRDNANRQAP 240

Query: 573 Q--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +  + +G  +H+SNLCTEI L S  EE+ VC L S+NLL       FD  K    + T  
Sbjct: 241 EVFKKLGKTIHASNLCTEIMLPSGPEESFVCCLSSLNLL------HFDEWKDTDAVETLT 294

Query: 630 RVLDNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             LD+V+D           +E+A +    +RAIG+G++G+ S L    IP  + EA+ + 
Sbjct: 295 IFLDSVLDDFIEKAEGIPYMERAVRFAKRYRAIGIGVLGWHSYLQSKGIPLENAEALFLN 354

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           +     + F  I    E A           S W +   P D +  L E            
Sbjct: 355 N-----LIFKTIREKAEEA-----------SRWLRKRHPEDELADLME------------ 386

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802
                          RN+  +AIAPT + + I G VS SI+P   N Y+K          
Sbjct: 387 --------------RRNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKARIAFR 432

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           + FL   L+ +   +E +   +   +GS+ +++ + D+ K +  T  EI    L+  A  
Sbjct: 433 SPFLEELLQAKGKNEEKVWRSILERNGSVQHLDFLSDEEKDVFKTFSEISQKTLVNLAIA 492

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           RQK+IDQ QSLNL +  E   K ++ +Y  AW  GLK  YY  S SA 
Sbjct: 493 RQKYIDQGQSLNLVIHPEAPPKDVNELYLHAWRGGLKALYYQFSASAA 540


>gi|317121176|ref|YP_004101179.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
 gi|315591156|gb|ADU50452.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
          Length = 881

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 160/623 (25%), Positives = 265/623 (42%), Gaps = 94/623 (15%)

Query: 300 ILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCST 355
           +  DRY     +G  +E  P+  + RVA  +A  E   ++   E  F   L  F F+   
Sbjct: 10  VFLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPGQREVWERRFRQALEGFKFVPGG 69

Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT +     +C++   P+D   GI   +     +    GG+G + + +R  G +
Sbjct: 70  RILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTY 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D 
Sbjct: 130 VRGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DL 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  + N +  I D FM+ V Q+  W L                             +  
Sbjct: 186 TKITNANLSVCISDAFMEAVQQDLPWDL-----------------------------KWN 216

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C E  L   
Sbjct: 217 GKVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCGEQPLGP- 275

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHT 652
                VCNLG+INL A     + D + L  T+  AVR LDNVID   +   E  K   + 
Sbjct: 276 ---WGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYG 332

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG MG    L  L I Y S +A E+ D+    I   A   S  LA+E+GA+  F 
Sbjct: 333 VRRIGLGTMGLADMLIKLRIRYGSEKAFEVCDQVYRLIRDEAYRTSALLAKEKGAFPWFD 392

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
              + QG F                     RLP +++++ +   G+RN   +  APT T 
Sbjct: 393 KEKYLQGWF-------------------IQRLP-EDIRQLIAQHGIRNGFLLTQAPTGTT 432

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + GVS  I+P +   + +++ +G   V                        YH+    
Sbjct: 433 SLLAGVSSGIEPVFAFSFKRTDRTGTHIV------------------------YHELYKE 468

Query: 833 NIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI--- 888
            +E+ PD+ +     +A ++ P   +   +  Q+++D   S++  ++ P    +D +   
Sbjct: 469 WLEKHPDEPVPDYFVSADQLTPEEHVRMQAIIQQYVD--ASISKTVNAPREHTVDQVRTL 526

Query: 889 YRQAWLMGLKTTYYLRSRSATSV 911
           YR A+ +G K   Y R  S   V
Sbjct: 527 YRLAYELGCKGITYYRDGSREGV 549


>gi|50914443|ref|YP_060415.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50903517|gb|AAT87232.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 719

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDTQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S + D   F     G      D + ++ +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|71903781|ref|YP_280584.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|71802876|gb|AAX72229.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
          Length = 719

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G  F     G      D + ++ +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|294505969|ref|YP_003570027.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
 gi|294342297|emb|CBH23075.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
          Length = 560

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 162/584 (27%), Positives = 243/584 (41%), Gaps = 113/584 (19%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           E +  A  FY  ++  ++  ++P   N G       SCF + + D +  I     E  M+
Sbjct: 53  EMDGFADRFYEYMARGYYSLASPVWANFGLDRGLPISCFGSYIDDSMEAILDTHAEVGMM 112

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG    +  VR  GA I   NG S G  PF ++ +     V+QG  R+G    Y++
Sbjct: 113 TKVGGGTSGYFGDVRPRGASIT-NNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYID 171

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVEE+L+++  T  D  +T             M  V     W     D  SD    
Sbjct: 172 IEHPDVEEWLNIQ--TEGDAIQT------------MMYGVVVGDDWMEAMIDGDSDKR-- 215

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                                         ALW K++      G P+I F+       PQ
Sbjct: 216 ------------------------------ALWAKVVESRMNLGIPYILFRGNVQDGRPQ 245

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +      VH+SNLC+E+ L S  +E+ VC L S+N L       +D  K    + T  +
Sbjct: 246 VYKDKGYDVHASNLCSEVLLPSGPDESFVCCLSSMNAL------HYDDWKDTDAVETLTQ 299

Query: 631 VLDNVIDINCHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            LD V+      I+ AK   H          HRAIG+G++G+ S L    IP+ S EA  
Sbjct: 300 FLDAVMQ---EFIDGAKGMAHMDRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASL 356

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
              E  + I   + +AS ELA   G     +G                            
Sbjct: 357 TGAEIAKTIKERSYAASAELADRFGEPPVLEG---------------------------- 388

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800
                          G RN+  MA+APT + + I G VS SI+P   N +V+       T
Sbjct: 389 --------------YGRRNATTMAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVT 434

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N  L   L+++    +A+  ++   DGS+ +++ + D+ K +  T  EI  M +I+ A
Sbjct: 435 YKNPHLKALLQEKGRDTDAVWDEIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQA 494

Query: 861 SRRQKWIDQAQSLNLYLDEPSG--KKLDFIYRQAWLMGLKTTYY 902
           + RQK IDQ+QSLNL +D  S   K ++ +Y +AW  G+K+ YY
Sbjct: 495 AGRQKHIDQSQSLNLAIDPGSTPVKDINRLYVEAWKKGVKSLYY 538


>gi|149914029|ref|ZP_01902561.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812313|gb|EDM72144.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 759

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 158/593 (26%), Positives = 257/593 (43%), Gaps = 92/593 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E + +    +FY  L  F ++ +      +GT R   L +CF + T+PDD+
Sbjct: 37  RIARALAAVEDDPKLWEQKFYAALEDFKYLPAGRITAGAGTGRSVTLFNCFVMGTIPDDM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA +      + G + F+ V +     +  
Sbjct: 97  GGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAEVKSVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIAAKA----DAARLRMFNLSVLVTDDFMEAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L               EF                KV+R + A  LW +++   ++   P 
Sbjct: 213 L---------------EFGG--------------KVYRTVEARDLWNRIMQATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGSIN+ A    + F    
Sbjct: 244 VIFIDRINAANNLNYCETISATNPCGEQPL----PPYGACLLGSINM-ARLVTDPFGPEA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D D L   +  AVR++DNV+D +   +E   +     R IGLG+ G   AL ++ + Y
Sbjct: 299 ALDEDALDDLVAVAVRMMDNVVDASRFPLEAQAREAEAKRRIGLGVTGLADALLMVGLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEV 732
            S EAV   +  +  I+  A  ASV+LA+E+G +      L+D G F       G+ A+V
Sbjct: 359 GSDEAVAQTEAWLHQIARAAYLASVDLAREKGPF-----PLFDAGAFLASGNMRGMDADV 413

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791
           R+ +A +                 G+RN+   +IAPT TI+   G VS  I+P +   Y 
Sbjct: 414 REAIAEH-----------------GIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYSYT 456

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +  D +     +V+   Q  +W E      K+ D           DL      A  +
Sbjct: 457 RKVLQKDGSRTEEEVVDYAVQ--MWRE------KFGDA----------DLPDYFVNAQTL 498

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
            P   ++  +  Q+W+D + S  +      G +    +Y QA+  G K  TTY
Sbjct: 499 APQDHVKMQAAAQRWVDSSISKTINCPADIGFEAFKDVYMQAYETGCKGCTTY 551


>gi|310641425|ref|YP_003946183.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309246375|gb|ADO55942.1| Ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 694

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 153/585 (26%), Positives = 267/585 (45%), Gaps = 66/585 (11%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G +R  +L SCFL  + D L  I   L     L+K  GG+  + + +R  G 
Sbjct: 145 ATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRSRGE 204

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++G++P LK+  D     +Q G+RKG+  AY   +  DV EFLD +K   D+
Sbjct: 205 AIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADE 264

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R R   ++    +P+ F K    N    +F+P  V   +  +  + ++  E Y+      
Sbjct: 265 RVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDMDLD-EMYDTLLADD 323

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +K    +SA  +  K+  +  E+G+P+I  K   N     ++VG +  SNLCTEI    
Sbjct: 324 RVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQIKMSNLCTEIFQLQ 383

Query: 593 SSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-- 638
            + E A             CNL S+N++     N  ++ K+  ++   +  L +V D+  
Sbjct: 384 ETSEIADYGQQDIIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGMIALTSVSDMTQ 438

Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N   + KA +  H+   +GLG+M     L    I Y S EA +        +++H+I 
Sbjct: 439 VANAPGVAKANREMHS---VGLGVMNLHGYLAKNKIAYESNEAKDFVRTFFMTMNYHSIE 495

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTSRLPWDEL 749
            S+E+A+  G ++  F+ S +  GV+       D     A V++    +   ++  WD L
Sbjct: 496 KSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPTTARVQELFKDIYIPTQADWDTL 555

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K  V   G+ ++  MAIAPTA+I+ I   + S+ P                     +V +
Sbjct: 556 KADVMKNGLYHAYRMAIAPTASISYIQNATSSVMP---------------------IVEQ 594

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           ++ R   +      + Y          +  D    + +A+++D   +++  +  Q  +DQ
Sbjct: 595 IETRTYANSTTYYPMPY----------LQKDNVFFYKSAYQMDQFKVLDLIAEIQPHVDQ 644

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             S  L+++ + + ++L   Y  A   GLK+ YY R++   SVE+
Sbjct: 645 GISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKK-LSVEE 688


>gi|307727744|ref|YP_003910957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
 gi|307588269|gb|ADN61666.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
          Length = 859

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 164/602 (27%), Positives = 267/602 (44%), Gaps = 80/602 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378
           F RVA G+A  E E  + +VE   + +  H       + ++        L +CF+  V D
Sbjct: 51  FRRVAHGVAAAEPEALRESVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 110

Query: 379 --------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                    L GI+ AL + A   +  GG+G +++ +R  GA +H T+  + G   ++ V
Sbjct: 111 AIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPCSYMDV 170

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  + D FM
Sbjct: 171 FDASCRTVESAGSRRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNVSVGVTDQFM 226

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V +N  W L    E S      G           RQ D G + V+ +  A  +W +++
Sbjct: 227 RAVEENELWQLVHRAEPSPALRAAGDM---------RQRDDG-MWVYSERPAREIWDRIM 276

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607
              ++   P I F    N  +  + V  + ++N C E  L +       CNLG +NL   
Sbjct: 277 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 332

Query: 608 -LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            L  FA        FD+D LA   RT VR LDNV+D+    + +    +   R IG+G  
Sbjct: 333 VLEPFAQLKGRKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRIGVGFT 392

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720
           G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    + + G 
Sbjct: 393 GLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAKRYLEPGT 452

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778
           F                    SRLP D LK  ++  G+RNS+ ++IAPT T+  A     
Sbjct: 453 F-------------------ASRLPED-LKDAIRRDGIRNSHLLSIAPTGTVSLAFADNA 492

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++   Y +  +  D +   +F V +   R L+ E             G++ R+P
Sbjct: 493 SNGIEPAFSWTYKRMKVMADGS-RETFDVEDYAYR-LYRELG-----------GDVSRLP 539

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           D       +A E+     ++  +  Q ++D   ++++N+  D P  +  + +Y  AW  G
Sbjct: 540 D----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFDAWKSG 594

Query: 897 LK 898
           LK
Sbjct: 595 LK 596


>gi|94994622|ref|YP_602720.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94548130|gb|ABF38176.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 719

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKTNPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S + D   F     G      D + ++ +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|313890803|ref|ZP_07824428.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120904|gb|EFR44018.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 719

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 177/672 (26%), Positives = 291/672 (43%), Gaps = 99/672 (14%)

Query: 281 LANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEK 337
           LA  LK E +F F+ ++     Y +Y L  N     +E  +   M  A+  A    E  K
Sbjct: 82  LATILKSE-NFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYYADGNEELAK 140

Query: 338 R-AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
             AVE  N      +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++
Sbjct: 141 DLAVEMINQ----RYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSR 196

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +
Sbjct: 197 IGGGVGISLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIF 256

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+  FL  +K   D++ R   ++    +PD F +    N    LFSP ++        
Sbjct: 257 HPDIIAFLSTKKENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIE------- 309

Query: 516 KEFEIAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           +E+ IA+      E Y+       I    K+ A  L  ++  +  E+G+P+I   D  N 
Sbjct: 310 REYGIAFNYIDITEKYDELVANPNITK-TKLRARDLETEISKLQQESGYPYIINIDTANK 368

Query: 570 RSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFD 617
            +P    G +  SNLC+EI        +N + E   +     CNLGS N+L    +  F 
Sbjct: 369 TNPID--GKIIMSNLCSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF- 425

Query: 618 YDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                 +I+   R L  V D +    +   K  N      GLG MG  S L   HI Y S
Sbjct: 426 ----GRSIKAMTRALTYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGS 481

Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--------PIDSIG 727
           PE++E  D     +++  +  S  +A+ER   +  F+ S +  G +         I    
Sbjct: 482 PESIEFTDIYFMLMNYWTLVESNNIARERHTTFVGFEKSQYADGTYFDKYVTGQFIPKSD 541

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L+ E+     + + S   W  L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q
Sbjct: 542 LVKELFKNHFIPQAS--DWQALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQ 599

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +                   E +Q     E  I  + Y    + + + IP      + +
Sbjct: 600 RI-------------------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTS 629

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAW 893
           A+++D   +I+  +   + +DQ  SL L+L               + + + L  +   A+
Sbjct: 630 AYDMDMRKVIDVYAAATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAF 689

Query: 894 LMGLKTTYYLRS 905
             G+K+ YY+R+
Sbjct: 690 NKGIKSIYYVRT 701


>gi|329575045|gb|EGG56597.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1467]
          Length = 591

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 156/593 (26%), Positives = 267/593 (45%), Gaps = 80/593 (13%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G  R  +L SCFL  V DD+  I  +      L++  GG+G   + +R 
Sbjct: 23  YQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSFNSALQLSRIGGGVGITLSNLRE 82

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K  
Sbjct: 83  AGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKKEN 142

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+   
Sbjct: 143 ADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDNLV 201

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
               I+  RKI A  L  ++     E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 202 ANPNIRK-RKIKARDLENEISKSQQESGYPYIINIDTANKNNPID--GKIIMSNLCSEIL 258

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N   E   +     CNLGS N++     N  +      ++R   R L  V D
Sbjct: 259 QVQTPSVINGKQEYEVLGTDISCNLGSTNIV-----NLMESPDFGKSVRAMTRALTFVTD 313

Query: 638 IN----CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +      TI+   + +HT   IGLG MG  +     H+ Y S E+++  D     +++ 
Sbjct: 314 ASEIDVVPTIQNGNRLSHT---IGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYW 370

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----W 746
            +  S ++A+ER   + + + S +  G +    I G      D++  + +  ++P    W
Sbjct: 371 TLMESNQIAKERNQVFHNLEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDW 430

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+  VK  G+ + N +A+AP  +I+ I   S SI P                     +
Sbjct: 431 AALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHP---------------------I 469

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              +++R    E  I  + Y    + N + IP      + +A+++D   +I+  +  Q+ 
Sbjct: 470 TRMIEER---QEKKIGKIYYPAPYLAN-DTIP-----YYTSAYDMDMRKVIDVYATAQQH 520

Query: 867 IDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L++  + P G            + L+ +   A+  G+K+ YY+R+
Sbjct: 521 VDQGMSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 573


>gi|46092514|dbj|BAD14377.1| hypothetical protein [Solanum melongena]
          Length = 169

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G 
Sbjct: 1   YIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLRKNHGK 60

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G++FE  Y  YER+   
Sbjct: 61  EEHRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGEDFEKLYTKYEREG-- 118

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              K  + + A  LW ++L    ETG P++ +KD CN +S QQ++G + SSNLC
Sbjct: 119 ---KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLC 169


>gi|21910585|ref|NP_664853.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28895724|ref|NP_802074.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|21904786|gb|AAM79656.1| putative ribonucleoside-diphosphate reductase 2 alpha subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810973|dbj|BAC63907.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes SSI-1]
          Length = 719

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G  F     G      D + ++ +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|254449519|ref|ZP_05062956.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263925|gb|EDY88195.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 753

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 162/600 (27%), Positives = 262/600 (43%), Gaps = 102/600 (17%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + R+A  LA  E + +    +FY  L+ F ++ +      +GT R   L +CF + T+PD
Sbjct: 35  WARIAKSLASVEKDPKAWEPKFYEALNDFRYLPAGRITAGAGTDRSVTLFNCFVMGTIPD 94

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 95  TMGGIFDALREAALTMQQGGGIGYDFSTIRPKGAVVKGVAADASGPLSFMDVWDAMCRTI 154

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM+ V  +  
Sbjct: 155 MSAGSRRGAMMATMRCDHPDVEDFITAKS----DAARLRMFNMSVLITDPFMEAVKADKP 210

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L    E                               R + A ALW  ++   +    
Sbjct: 211 WNLVWAGET-----------------------------VRTVQARALWDSIMQSTYSHAE 241

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616
           P + F D  N  +   +V  + ++N C E  L         C LGSINL A   +N F  
Sbjct: 242 PGVIFIDRINTMNNLNYVETIAATNPCGEQPL----PPYGACLLGSINL-ARLVSNPFTD 296

Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +LA  +  AVR++DNV+D +   +E   +     R IGLG+ G   AL +  +
Sbjct: 297 TATIDDAELAELVGLAVRMMDNVVDASKFPLEAQAREAAAKRRIGLGVTGLADALLMTGL 356

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S +A    +  M+ I+  A  +SV+LA+E+GA+  F            D+   LA  
Sbjct: 357 RYGSEDAARQTEAWMKAIARAAYLSSVDLAREKGAFPLF------------DADKYLAS- 403

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791
            + + M+       D+++  ++  G+RN+   ++APT TI+   G VS  I+P +   Y 
Sbjct: 404 GNMMQMD-------DDVRDAIREHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYAYT 456

Query: 792 KSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATA 848
           +  +  D +     +V+   +  RDL  +A + D         N + +P  D  ++ A A
Sbjct: 457 RKVLQKDGSRTEEEVVDYAVKMWRDLKGDAELPDY------FVNAQTLPAMDHVRMQAAA 510

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901
                          QKWID + S  + + E     +DF     +Y  AW  G K  TTY
Sbjct: 511 ---------------QKWIDSSISKTINVPE----DIDFQSFKDVYMAAWDQGCKGCTTY 551


>gi|229090404|ref|ZP_04221647.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
 gi|228692987|gb|EEL46705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
          Length = 563

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 246/508 (48%), Gaps = 35/508 (6%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 357 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 472

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AM 738
               +++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     +
Sbjct: 473 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGI 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765
           +  ++  W++LK++V   G+ N+  C A
Sbjct: 533 HIPTKEDWNQLKRQVMEHGLYNALTCSA 560


>gi|301052990|ref|YP_003791201.1| ribonucleoside-diphosphate reductase subunit alpha, N-terminal
           domain-containing protein [Bacillus anthracis CI]
 gi|300375159|gb|ADK04063.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 575

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/508 (27%), Positives = 246/508 (48%), Gaps = 35/508 (6%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            V  SNLCTEI  L  +SE               CNLGS+N++    N +   + + + +
Sbjct: 369 TVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGM 427

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A  
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFART 484

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV----FPIDSIGLLAEVRDEL--AM 738
               +++++I  S+E+A+E+G  +  F  S +  G     +   +   + E   +L   +
Sbjct: 485 FFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTNYSPVTEKVQQLFEGI 544

Query: 739 NRTSRLPWDELKKRVKTIGMRNS-NCMA 765
           +  ++  W++LK++V   G+ N+  C A
Sbjct: 545 HIPTKEDWNQLKRQVMEHGLYNALTCSA 572


>gi|322374375|ref|ZP_08048889.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
 gi|321279875|gb|EFX56914.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
          Length = 719

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 171/657 (26%), Positives = 288/657 (43%), Gaps = 82/657 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A +  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI        +N + E         CNLGS N++    +  F       +IR  VR L 
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALT 437

Query: 634 NVID----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            V D    +   TI+      HT    GLG MG  S L    I Y S E++E        
Sbjct: 438 FVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSHESIEFTSIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRTSRLP- 745
           +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + +   +P 
Sbjct: 495 MNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPS 554

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +             
Sbjct: 555 AADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI------------- 601

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 E +Q     E  I  + Y    + + + IP      + +A+++D   +I+  + 
Sbjct: 602 ------EERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|306833074|ref|ZP_07466205.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
 gi|304424783|gb|EFM27918.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
          Length = 719

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 263/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +  SCFL +V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K  
Sbjct: 211 AGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E  +  A
Sbjct: 271 ADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +   +K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+E+ 
Sbjct: 331 NPNIVKT--KIRARDLETEISKLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N++    +  F       +I+   R L  V D
Sbjct: 387 QVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  + 
Sbjct: 442 TSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLV 501

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    I G      D +  +     +P    W +L
Sbjct: 502 ESNHIARERKQTFVGFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDWAKL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V T G+ + N +A+AP  +I+ I  VS S+ P  Q +                   E
Sbjct: 562 RDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L  D P G            + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|260574979|ref|ZP_05842981.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259022984|gb|EEW26278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 761

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 164/598 (27%), Positives = 257/598 (42%), Gaps = 86/598 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           RVA  LA  E +       FY  L  F F+ +      +GT R   L +CF + T+PD++
Sbjct: 37  RVARALAEVEAKPALWEDRFYAALEGFKFLPAGRITAGAGTGRTVTLFNCFVMGTIPDNM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFESLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H DVE F++ +K    D  R    N +  I D FM  V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDVEAFIEAKK----DPARLRMFNLSVLITDAFMAAVKADGPWE 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L   D                             KV++   A  LW +++   ++   P 
Sbjct: 213 LCFGD-----------------------------KVYKTCQARDLWNRIMRNTYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +V  + ++N C E  L         C LGSIN LA   +N F    
Sbjct: 244 VIFIDRINAMNNLAYVETIAATNPCGEQPL----PPYGACLLGSIN-LATLVSNPFAANA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D   L   +RTAVR++DNV+D +   + +        R IGLG+ G   AL +L + Y
Sbjct: 299 ALDLAALDELVRTAVRMMDNVVDASRFPLPEQAVEAQAKRRIGLGVTGLADALLMLRLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A    +  M+ I+  A  ASV+LA+E+GA+  F            D+   LA    
Sbjct: 359 GSDAAAAQTEAWMQAIARAAYLASVDLAREKGAFPLF------------DAEKYLA---- 402

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
               + T R    +++  ++  G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 403 ----SGTMRQMDGDVRDAIRKHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYSRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   +  LW E    D    D  + N + +P            +D 
Sbjct: 459 VLQKDGSRTEEEVVDYAVR--LWRETH-GDAPLPDYFV-NAQTLP-----------PLDH 503

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +W+  +A   QKW+D + S  +   E  S      +Y  AW  G K     R  + T 
Sbjct: 504 VWMQAAA---QKWVDSSISKTINCPEDISFDDFQQVYMAAWDQGCKGCTTYRPNAVTG 558


>gi|139473585|ref|YP_001128301.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|134271832|emb|CAM30067.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 719

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    +      + +L  ++ +   +P    W  L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVAKSDLVKSLFKDHFIPQASDWKAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|15675307|ref|NP_269481.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910936|ref|YP_282486.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13622485|gb|AAK34202.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes M1 GAS]
 gi|71853718|gb|AAZ51741.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 719

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    +      + +L  +  +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|209559613|ref|YP_002286085.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540814|gb|ACI61390.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 719

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    +      + +L  +  +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|94990702|ref|YP_598802.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94544210|gb|ABF34258.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 719

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 261/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    +      + +L  +  +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|227513707|ref|ZP_03943756.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227522502|ref|ZP_03952551.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083026|gb|EEI18338.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227090324|gb|EEI25636.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
          Length = 721

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 159/658 (24%), Positives = 290/658 (44%), Gaps = 82/658 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           ++DF F+ ++     Y +Y L  N +   + ++F  RVA          E+ A+   + +
Sbjct: 88  DQDFHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEI 146

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G ++  +  SCFL    DD+  I   +     L++  GG+G + +
Sbjct: 147 IHQRYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLRAAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD + + V  +A   LFSP    D+   YG  F      +
Sbjct: 267 KKENADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSP---YDVEREYGVPFSYVDITK 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      +IK   K+ A  L  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 324 EYDHLVANDKIKK-TKVKARDLETEISKLQQESGYPYIINIDTANRENPID--GRIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI       T+++      +     CNLGS N+      N  +      ++ + VR 
Sbjct: 381 LCSEILQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  N   +   +  N    +IGLG MG  S     H+ Y SPE++E        +
Sbjct: 436 LTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLL 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-LLAEVRDEL-----AMNRTSR 743
           ++ ++ AS ++A+ER   + +F+ S +  G +    +    A   D++      +   + 
Sbjct: 496 NYWSLVASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFHGITIPTN 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LKK V   G+ + N +A+AP  +I+ I   + S+ P                   
Sbjct: 556 EDWVALKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHP------------------- 596

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             ++N +++R    E+ I  + Y    + N      D    + +A+++D   +I+  +  
Sbjct: 597 --IINRIEER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +DQ  +L L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QVHVDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile 630]
 gi|115252053|emb|CAJ69889.1| Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase large subunit) [Clostridium difficile]
          Length = 699

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292
           E    YIEE ++ +L   + ++  L YL ++  Y ++                     F 
Sbjct: 26  EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHKFE 85

Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350
           F+ Y+ +   Y  Y L  N  + E+ + +  +V +  L L    K+  A+   + +    
Sbjct: 86  FQSYMSVNKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGNKD-LALNLADKIVKQE 143

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G  R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + +R 
Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +K  
Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y++  
Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC EI 
Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381

Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
              +  E               CNLGS+N+      N  D   + ST+ TA+R L  V D
Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I 
Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744
           AS+++A ER   +  F  S + +G     +  +L++  ++  + ++ ++           
Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++   GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610

Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL N+             ++ Y+                   +A+ +D   +I+  
Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q  +DQ  S  L++ DE + + +   Y  A+  GLK+ YY R++
Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|255307976|ref|ZP_05352147.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile ATCC 43255]
          Length = 699

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292
           E    YIEE ++ +L   + ++  L YL ++  Y ++                     F 
Sbjct: 26  EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHKFE 85

Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350
           F+ Y+     Y  Y L  N  + E+ + +  +V +  L L   +K+  A+   + +    
Sbjct: 86  FQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVKQE 143

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G  R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + +R 
Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +K  
Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y++  
Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC EI 
Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381

Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
              +  E               CNLGS+N+      N  D   + ST+ TA+R L  V D
Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I 
Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744
           AS+++A ER   +  F  S + +G     +  +L++  ++  + ++ ++           
Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++   GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610

Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL N+             ++ Y+                   +A+ +D   +I+  
Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q  +DQ  S  L++ DE + + +   Y  A+  GLK+ YY R++
Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|227510691|ref|ZP_03940740.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189812|gb|EEI69879.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 721

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 159/658 (24%), Positives = 290/658 (44%), Gaps = 82/658 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           ++DF F+ ++     Y +Y L  N +   + ++F  RVA          E+ A+   + +
Sbjct: 88  DQDFHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEI 146

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G ++  +  SCFL    DD+  I   +     L++  GG+G + +
Sbjct: 147 IHQRYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLRAAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           +K   D++ R   ++    +PD + + V  +A   LFSP    D+   YG  F      +
Sbjct: 267 KKENADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSP---YDVEREYGVPFSYVDITK 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+      +IK   K+ A  L  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 324 EYDHLVANDKIKK-TKVKARDLETEISKLQQESGYPYIINIDTANRENPID--GRIVMSN 380

Query: 584 LCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI       T+++      +     CNLGS N+      N  +      ++ + VR 
Sbjct: 381 LCSEILQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  N   +   +  N    +IGLG MG  S     H+ Y SPE++E        +
Sbjct: 436 LTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLL 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-LLAEVRDEL-----AMNRTSR 743
           ++ ++ AS ++A+ER   + +F+ S +  G +    +    A   D++      +   + 
Sbjct: 496 NYWSLVASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFQGITIPTN 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LKK V   G+ + N +A+AP  +I+ I   + S+ P                   
Sbjct: 556 EDWVALKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHP------------------- 596

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             ++N +++R    E+ I  + Y    + N      D    + +A+++D   +I+  +  
Sbjct: 597 --IINRIEER---QESKIGKIYYPAPYLSN------DTMPYYTSAYDMDMRKVIDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +DQ  +L L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QVHVDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|238059797|ref|ZP_04604506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
 gi|237881608|gb|EEP70436.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
          Length = 611

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 168/617 (27%), Positives = 256/617 (41%), Gaps = 107/617 (17%)

Query: 313 RIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           RIE       RVA GL   E E           A  F  L++   F  S   L N GTR 
Sbjct: 30  RIESVDDLLDRVATGLGAVEREYGADESTARVWAARFRALMAENRFWPSGRILNNCGTRQ 89

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGV 424
            QL+SCF+  V DDL  IF  L+  A   +  GG G D TP+R  GA I       S G 
Sbjct: 90  GQLASCFVLPVEDDLGAIFDTLKLAASCHRTGGGTGFDLTPLRERGAPISTAEAAGSSGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + +L + +     V QGGK +GA  A L   H DV EF+D +   G    R  + N +  
Sbjct: 150 VSWLHLFDAETGVVMQGGKMRGANLASLSVRHPDVFEFIDAKAVVG----RLANFNLSVT 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+        TL    E+  +  + G+                     R++ A  
Sbjct: 206 VDDAFMR--------TLIDGGEIDLVSPVGGRPR-------------------RRVPAAE 238

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +WR++    + TG P + F D  N  +P    +G + ++N C E TL      T    LG
Sbjct: 239 IWRRISAQAWRTGDPGLLFTDMINRANPLLDRLGPIRTTNPCGEQTLYPYEPST----LG 294

Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL A    + + D  +L  T+  AVR+LDN ID + +   +       +R +GLG+MG
Sbjct: 295 SVNLRAMTGPDGRLDTARLERTVEDAVRLLDNSIDASHYPDPRITAMARGNRRLGLGVMG 354

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F   L  L + Y S  A+ + DE    I   A + +  LA ERG + +F  + +D  V  
Sbjct: 355 FADLLIALGVRYDSTRALAVVDEVGGRIRAVAEATTRRLAAERGTFPNFDPARFDAPV-- 412

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                               RN     IAPT TI+ + G S  I
Sbjct: 413 ------------------------------------RNCAVTTIAPTGTISMVAGCSSGI 436

Query: 783 DPSYQNLYVKSNM-SGDFTVVNSFL---------VNELKQRDLWDEAMISDLKYHDGSIG 832
           +P +  ++ K+ +  G  + V+  L         V+  + R L  E  +++L        
Sbjct: 437 EPRFAPIWRKNVLVDGGVSYVDEDLAADVCAHGGVDPEQARRLIRERPVTELP------- 489

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYR 890
               +P+ ++  +  A ++   W +  A++ Q+ ID A  +++NL  D  S   +  +  
Sbjct: 490 ----MPEPVRDRYRYAHDVPGEWHVRIAAQWQRHIDNAVSKTVNLPRDC-SVDDVAEVLT 544

Query: 891 QAWLMGLKTTYYLRSRS 907
            +W +G K     R  S
Sbjct: 545 ASWRLGCKGVSVYRQGS 561


>gi|73748165|ref|YP_307404.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73659881|emb|CAI82488.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 585

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 155/580 (26%), Positives = 254/580 (43%), Gaps = 85/580 (14%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGT 363
           +GS  E P+  F RVA  +A  E    ++      A EFY +++   F+ ++PTL N+G 
Sbjct: 21  DGSITESPEDMFRRVADAVAAAENAYNQQGKAACWADEFYRMMTGLEFLPNSPTLLNAGR 80

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
               LSSCF+  V D + GI  A+ E  ++ +Y GG G  +  +R     I   +  + G
Sbjct: 81  ELGLLSSCFVLPVEDSVEGIAKAIGEAMIIHQYGGGTGFAFDTIRPEDTPIKSGHNVAGG 140

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            +  + V ++ A  + Q G R G   A L   H D+ +F+  +    D+   + +     
Sbjct: 141 PVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DEGNHSANFGINI 196

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D F+++V +   + L +P                           GE+     +SA 
Sbjct: 197 ALTDSFIQKVRRGEDYELINPRT-------------------------GEVT--GSLSAS 229

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            ++ ++    +ETG P I F D  N  +P   +G   +++ C    L      T    LG
Sbjct: 230 DVFYRIAQSAWETGDPGIMFIDRINKDNPTPQLGEFVTTDPCGGQPLLPYESAT----LG 285

Query: 604 SINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +INL  +A    N F  DY +L   I  A+R LD+V+++N + I + +++    R IGLG
Sbjct: 286 TINLSLMALKEGNCFGVDYLRLGKLIAKAIRFLDDVLEVNRYPIPEVERAAKATRKIGLG 345

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ- 718
            MGF   L  L I Y S +AV +AD  M F++     AS ELA ERG++ +F G+++ + 
Sbjct: 346 FMGFAEMLIKLGIRYDSEQAVSLADRLMTFVNETVNKASEELALERGSFPAFAGNIYAKS 405

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G  P                                    RN+ C+    T T + I   
Sbjct: 406 GAKP-----------------------------------RRNATCLTFTNTGTTSIIADT 430

Query: 779 SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           S  I P Y  + V++ + G   + +N       ++R  ++  +I  L   + S  N   I
Sbjct: 431 SVGIHPIYSLVMVRNILDGQRLLDINHTFEETARERGFFNPVLIEKLLTGE-SPQNCPEI 489

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNL 875
           P D +++  TA +I P W I   +  QK  D A  Q++N 
Sbjct: 490 PRDYRRLLVTARDIQPEWCIRVQAAFQKHTDNAISQTVNF 529


>gi|94988800|ref|YP_596901.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94992685|ref|YP_600784.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94542308|gb|ABF32357.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546193|gb|ABF36240.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 719

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQG-VFPIDSIGLLAEVRDEL-AMNRTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G  F     G      D + ++ +   +P    W  L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAEDWKAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|19746347|ref|NP_607483.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19748542|gb|AAL97982.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes MGAS8232]
          Length = 719

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 260/590 (44%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+T  R L  V D
Sbjct: 387 QVQTPSLVNDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749
            S  +A+ER   +  F+ S +  G +    +      + +L  +  +   +P    W  L
Sbjct: 502 ESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWKAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|296159883|ref|ZP_06842704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
 gi|295889866|gb|EFG69663.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
          Length = 858

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 160/607 (26%), Positives = 275/607 (45%), Gaps = 90/607 (14%)

Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA G+A  E    + +VE        +  L +   M +  T   +      L +CF+
Sbjct: 48  FKRVARGVAEAEPPALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 102

Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D         L GI+ AL + A   +  GG+G +++ +R  GA +H T+  + G  
Sbjct: 103 QPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 162

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 163 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 218

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++  W L        +H       + A ++  ++ D   + V+ +  A A+
Sbjct: 219 TDDFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPARAI 268

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 269 WDRIMRSTYDIAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 324

Query: 606 NL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL    +  FA        FD+D LA   RT VR LDNV+D+    + +  + +   R I
Sbjct: 325 NLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLPQQYEESRAKRRI 384

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A    + +   A  ASVELA+ERGA+  F  + +
Sbjct: 385 GVGFTGLGDTLVMLGLRYDSQEGRDFAVGIAQLMRDEAYRASVELARERGAFPLFDAARY 444

Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
            + G F                    SRLP D +K+ ++  G+RNS+ ++IAPT T+  A
Sbjct: 445 LETGTF-------------------ASRLPED-IKQAIRRDGIRNSHLLSIAPTGTVSLA 484

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +  +  D +   SF V +   R L+ E             G+
Sbjct: 485 FADNASNGIEPAFSWTYTRMKVMADGS-RESFDVEDYAYR-LYRELG-----------GD 531

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           ++R+PD       +A E+     ++  +  Q ++D   ++++N+  D P  +  + +Y  
Sbjct: 532 VDRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFD 586

Query: 892 AWLMGLK 898
           AW  GLK
Sbjct: 587 AWKNGLK 593


>gi|118586507|ref|ZP_01543951.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433071|gb|EAV39793.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 723

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 152/604 (25%), Positives = 272/604 (45%), Gaps = 82/604 (13%)

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR
Sbjct: 152 RFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K 
Sbjct: 212 EAGASVMGLANMAGGVVPIMKLMEDVFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYE 526
             D++ R   ++    +PD F +   +     LFSP   +D+  +YG  F      + Y+
Sbjct: 272 NADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+
Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCS 385

Query: 587 EIT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVL 632
           EI        +N+  E T +     CNLGSIN+  + H A    D+ K   T+  A+  +
Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFV 441

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
               DI+   +   +  N    AIGLG MG  + L    I Y    +++  +      ++
Sbjct: 442 SESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVSLDFVNTFFLMTNY 499

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLP- 745
           + + AS ++A+ERG ++  F+ S +  G +       D      +V+   +      +  
Sbjct: 500 YTLLASNQIAKERGESFFEFEKSDYANGKYFDKYLAKDWGPKTDKVKKLFSDYHVPTIED 559

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK+ V   G+ N+   A+APT +I+ +   + S+ P                     
Sbjct: 560 WQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP--------------------- 598

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +V+ ++ R    E M   + Y    + N E +P      + +A+++D   +I++ +  Q+
Sbjct: 599 IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQE 649

Query: 866 WIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ +  
Sbjct: 650 HVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYNQGIKSIYYIRTFTDD 709

Query: 910 SVEK 913
           + E+
Sbjct: 710 NTEQ 713


>gi|241116846|ref|XP_002401636.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
 gi|215493180|gb|EEC02821.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
          Length = 382

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 196/389 (50%), Gaps = 51/389 (13%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGV-VHSSNLCTEITLN 591
           KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  +G+ V  SNLC+EITL 
Sbjct: 2   KVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 61

Query: 592 SS-----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +         TAVC L S+NL  ++   + D + + S +     VL++ I+    T+ +A
Sbjct: 62  TGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 120

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S        +  E+IS  A  AS+E+ +E+G
Sbjct: 121 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEKG 180

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                        V P           D L      R                 SN  AI
Sbjct: 181 -------------VCP-----------DALDAGSNERF----------------SNKTAI 200

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 201 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 260

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L     KK 
Sbjct: 261 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 320

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           L+ I+ +AW  G+K+ YY RS S    +K
Sbjct: 321 LNNIHFKAWKKGVKSLYYCRSTSIQRADK 349


>gi|261408340|ref|YP_003244581.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
 gi|261284803|gb|ACX66774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
          Length = 883

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 210/434 (48%), Gaps = 35/434 (8%)

Query: 368 LSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D  G I   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +  + 
Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258

Query: 487 DLFMKRVTQNAGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           + FMK V ++  W L  PD    D  +L+  + +     +++   R  I  ++ + A  +
Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYDELWDGDLD----KWKKAGRR--IIPYKTVKAREV 312

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++
Sbjct: 313 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 368

Query: 606 NLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           NL   +  AN+   +D+LA+T R +VR LDNVID   +  E+ + +    R +GLG MG 
Sbjct: 369 NLSKFYDEANHDVAWDELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGL 428

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  F  
Sbjct: 429 AELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGF-- 486

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             +  +AEV  E+A             + V+  G RN   +  APT +   + G S  I+
Sbjct: 487 --MKNMAEVYPEVA-------------EAVRKKGARNVTVITQAPTGSTGTMVGTSTGIE 531

Query: 784 PSYQNLYVKSNMSG 797
           P +   Y + +  G
Sbjct: 532 PYFAFKYFRQSRLG 545


>gi|256422446|ref|YP_003123099.1| ribonucleotide-diphosphate reductase subunit alpha [Chitinophaga
           pinensis DSM 2588]
 gi|256037354|gb|ACU60898.1| ribonucleoside-diphosphate reductase, alpha chain [Chitinophaga
           pinensis DSM 2588]
          Length = 565

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 155/576 (26%), Positives = 253/576 (43%), Gaps = 100/576 (17%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  ++       S+P   N GT      SCF   +PD++ GI   L E  M  K  GG  
Sbjct: 67  FVEMIERGWMSLSSPIWANMGTERGLPISCFNVHIPDNIEGITHKLGEVIMQTKIGGGTS 126

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G+ +   NGKS G + F+++ +     ++QGG R+GA  AY++  H D++E
Sbjct: 127 AYFGGLRARGSAVT-DNGKSSGAVSFMRLFDTAMDTISQGGVRRGAFAAYMDIDHDDIQE 185

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL ++    D      ++     +PD +M+ +                  D+  +E    
Sbjct: 186 FLSIK----DIGHPIQNLFYGVCVPDYWMQDMIDG---------------DMEKRE---- 222

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
                                  +W K+L    + G P++ F D  N   PQ +  +   
Sbjct: 223 -----------------------IWAKVLESRQQKGLPYLFFTDNVNRNKPQVYKDLNLA 259

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +++SNLC+EI L S+ +E+ +C L S+NL  +      D  KLA+    AV     V   
Sbjct: 260 INASNLCSEIMLPSTEDESFICCLSSMNLELYDEWKDTDAVKLATFFLDAVLQEFIVKTE 319

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             H +  A +    HRA+GLG++G+ S L    I +   +A ++     + I   A  A+
Sbjct: 320 GNHFLAAANRFAKRHRALGLGVLGWHSYLQKNMIAFEGMQAKQLTSIIFKDIRDKAEKAT 379

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA   G     KG                                           G 
Sbjct: 380 KELAWIYGEPEVLKG------------------------------------------YGR 397

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816
           RN+  MAIAPT + + I G  S  I+P   N Y K+ +S G+F   N +L   L+Q+ + 
Sbjct: 398 RNTTLMAIAPTTSSSAILGQTSPGIEPFSSN-YFKAGLSKGNFMRKNKYLKALLEQKGID 456

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +E     +  + GS+ ++E + +  K +  T  EI  + +++ A+ RQ  +DQAQSLNL 
Sbjct: 457 NEDTWRSIMLNHGSVQHLEELTEHEKDVFKTFKEISQLEIVQQAAIRQTHVDQAQSLNLN 516

Query: 877 LDEPSG---KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +  PS    K+++ +  +AW +G+KT YY RS+S +
Sbjct: 517 I--PSNLPVKEVNRLLIEAWKLGVKTLYYQRSQSVS 550


>gi|76799234|ref|ZP_00781408.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|76585417|gb|EAO62001.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
          Length = 704

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 144/525 (27%), Positives = 239/525 (45%), Gaps = 32/525 (6%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           +++ F F+ ++     Y +Y L  N     + ++   RV           E+ A +    
Sbjct: 87  FDKKFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALE 145

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +    N    LFSP  +   + +     +I  + 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDITEKY 325

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  A+    K   KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 326 DELVANPNITKT--KINARDLETEISKLQQESGYPYIINIDTANRTNPVD--GKIIMSNL 381

Query: 585 CTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI        +N + E   +     CNLGS N+L    +  F       +I+T  R L
Sbjct: 382 CSEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDF-----GKSIKTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TFVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-GLLAEVRDEL-AMNRTSRLP--- 745
           +  +  S  +A+ER   +  F+ S +  G +    + G      D++ ++     +P   
Sbjct: 497 YWTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAK 556

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +
Sbjct: 557 DWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI 601


>gi|86136293|ref|ZP_01054872.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
 gi|85827167|gb|EAQ47363.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
          Length = 765

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 163/620 (26%), Positives = 270/620 (43%), Gaps = 89/620 (14%)

Query: 296 LGLQILYDRY-FLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +  QI   +Y F   +G+ I++  +  + R+A  LA  E        +FY  L  F ++ 
Sbjct: 8   IAAQIWDMKYRFKEADGTPIDVTVEDSWRRIARDLARAEDNPGVWEEKFYEALEDFKYLP 67

Query: 354 STPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +      +GT R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  G
Sbjct: 68  AGRITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRG 127

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A + G    + G + F+ V +     +   G R+GA+ A +   H DVE F+  +     
Sbjct: 128 ADVKGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFITAKS---- 183

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D  R    N +  I D FM+ V  +  W                   E+ ++        
Sbjct: 184 DSARLRMFNMSVLISDAFMEAVKADGSW-------------------ELQFDG------- 217

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              K++  + A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L 
Sbjct: 218 ---KIYHTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPL- 273

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEK 645
                   C LGSIN+ A   +N F+ +       +   + TAVR++DNV+D++   +E 
Sbjct: 274 ---PPYGACLLGSINM-ARLVSNPFESNAELNQSAMQELVATAVRMMDNVVDVSKFPLEA 329

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                   R IGLG+ G   AL +L + Y S  A    D  +  I+  A  ASV+LA+E+
Sbjct: 330 QAAEAQAKRRIGLGVTGLADALLMLGLEYGSDAAARQTDRWLHAIARAAYLASVDLAKEK 389

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F            D+   LA       MN       +++++ ++  G+RN+   +
Sbjct: 390 GAFPLF------------DAEAYLASGN---MMNMD-----EDVREAIREHGIRNALLTS 429

Query: 766 IAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+   G VS  I+P +   Y +  +  D +     +V+   Q  ++ E   +D 
Sbjct: 430 IAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGTDA 487

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
               G   N + +P              P   ++  +  QKWID + S  +   E  S  
Sbjct: 488 ALP-GYFVNAQTLP--------------PAAHVKMQAAAQKWIDSSISKTINCPEDISFD 532

Query: 884 KLDFIYRQAWLMGLK--TTY 901
           +   +Y QAW  G K  TTY
Sbjct: 533 EFKDVYMQAWDQGCKGCTTY 552


>gi|254976541|ref|ZP_05273013.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-66c26]
 gi|255093926|ref|ZP_05323404.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CIP 107932]
 gi|255315678|ref|ZP_05357261.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-76w55]
 gi|255518339|ref|ZP_05386015.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-97b34]
 gi|255651456|ref|ZP_05398358.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-37x79]
 gi|260684516|ref|YP_003215801.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile CD196]
 gi|260688174|ref|YP_003219308.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile R20291]
 gi|306521279|ref|ZP_07407626.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-32g58]
 gi|260210679|emb|CBA65437.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CD196]
 gi|260214191|emb|CBE06440.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile R20291]
          Length = 699

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 174/707 (24%), Positives = 314/707 (44%), Gaps = 100/707 (14%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292
           E    YIEE ++ +L   + ++  L YL ++  Y ++                     F 
Sbjct: 26  EALSSYIEEFIQPKLRKFNNLEERLKYLIDEGYYLKEVINQYSIDVIKNIYDMIDKHKFE 85

Query: 293 FE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFH 350
           F+ Y+     Y  Y L  N  + E+ + +  +V +  L L   +K+  A+   + +    
Sbjct: 86  FQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVKQE 143

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G  R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + +R 
Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +K  
Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y++  
Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDKLV 322

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC EI 
Sbjct: 323 NDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCEIF 381

Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
              +  E               CNLGS+N+      N  D   + ST+ TA+R L  V D
Sbjct: 382 QYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I 
Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----------- 744
           AS+++A ER   +  F  S + +G     +  +L++  ++  + ++ ++           
Sbjct: 497 ASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 745 --PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++   GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDSTTI 610

Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL N+             ++ Y+                   +A+ +D   +I+  
Sbjct: 611 YPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVIDLV 639

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q  +DQ  S  L++ DE + + +   Y  A+  GLK+ YY R++
Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|81428552|ref|YP_395552.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610194|emb|CAI55243.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 723

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 167/659 (25%), Positives = 290/659 (44%), Gaps = 84/659 (12%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           ++DF F+ ++     Y +Y L  N +   + + F  RV           E  A+   + +
Sbjct: 90  DQDFHFKSFMAAYKFYAQYALKTNDNGFYL-EDFKDRVFTNALYFADGDEALAMSVADEM 148

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TPT  N+G +R  +L SCFL    DD+  I   +     L++  GG+G   +
Sbjct: 149 IHQRYQPATPTFLNAGRSRRGELVSCFLLQTTDDMNSIGRTINSALQLSRIGGGVGISLS 208

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +RG G  I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H DV  FL  
Sbjct: 209 NLRGAGDPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDVVAFLGA 268

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAY 522
           +K   D++ R   ++    +PD + + V ++A   LFSP  V      YG+ F   +I  
Sbjct: 269 KKENADEKYRLKTLSLGLTVPDKYYELVKEDADMYLFSPYSV---EREYGQPFSYIDITA 325

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+       IK   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 326 E-YDNLVANEAIKK-TKIKARDLENEISKLQQESGYPYIVNIDTANKANPID--GKIIMS 381

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+        +N+  E   +     CNLGS N+     +  F +     +I T VR
Sbjct: 382 NLCSEVLQVQTPSQINNRQEYDVLGTDISCNLGSTNIPNMMTSPDFGH-----SIETMVR 436

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +      N     IGLG MG  +      + Y S E+++        
Sbjct: 437 SLTYVTDHSDIDVVPSVAHGNQLAHTIGLGGMGLHTYFAKNQMMYGSEESIDFTSNYFML 496

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL-----LAEVRDEL-AMNRTS 742
           +++  + AS ++A+ERG  + +F+ S +  G +    +        A+V+     +   +
Sbjct: 497 LNYWTLVASNKIAKERGITFDNFENSKYADGSYFDQYLNTEWAPKTAKVKGLFDGVFIPT 556

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  LK+ +   G+ + N +A+AP  +I+ I   S S+ P                  
Sbjct: 557 QADWAALKEAIMQDGLYHQNRLAVAPNGSISYINDTSASLQP------------------ 598

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              +VN ++ R    E  I  + Y    + N E +P      + +A++ID   +I+  + 
Sbjct: 599 ---IVNRVEDR---QEKKIGTIYYPAPGLSN-ETMP-----YYESAYDIDMRKVIDIYAA 646

Query: 863 RQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            QK +DQ  S+ L++                D+ + + L+ +   A    +K+ YY+R+
Sbjct: 647 AQKHVDQGMSMTLFMRSTIPAGLYDWKDGRTDKMTTRDLNILRNYAHHKSIKSIYYIRT 705


>gi|282598965|ref|YP_003358882.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
 gi|257219035|gb|ACV50050.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
          Length = 711

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 165/620 (26%), Positives = 281/620 (45%), Gaps = 104/620 (16%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS----SCFLTTVPDDLYGIFGALQENAMLA 394
           A   Y+  S   F+ ++P   N+     ++     SCFL  VPD + G+     E ++L+
Sbjct: 57  AQRLYDYASKDDFIWASPAFSNATLPGEKIRAMPISCFLPDVPDSVPGLLYQKAELSLLS 116

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV-AVNQGGKRKGAVCAYLE 453
              GG+G ++  +R +       + K+ G IPF+   ND+A+ A  QG  R+GA+ A L 
Sbjct: 117 VLGGGVGQNFGGIRSV-------SDKAPGPIPFI-AENDSAILAWKQGKIRRGALSANLG 168

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D  EF+ +R  TGD  R++ +++    + D +M+ V            E   L D 
Sbjct: 169 VTHPDTMEFMRIRVPTGDIERKSLNIHHGFNVTDEYMQAVVDGI--------ETLPLIDP 220

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRS 571
            GK+                      ++    +R+M+T+   TG P++ F D     +  
Sbjct: 221 TGKQVG-------------------SMNPREHFREMVTVRSRTGEPFMYFIDRAQEYLSL 261

Query: 572 PQQHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           PQ+ +G+   ++N+CTEITL ++ + T VC L SIN    + + +  Y ++ S +   + 
Sbjct: 262 PQKLIGMACKATNICTEITLAATKDRTPVCCLCSINA-ERYEDFKPYYQEMVSDL---IE 317

Query: 631 VLDNVIDINCHTIEKA--------------------KKSNHTHRAIGLGLMGFQSALHLL 670
           +LDN+I+     +EK                     KKS    R++GLG+MG    L   
Sbjct: 318 MLDNIIEFFVQNVEKVAEGYADQLDRDLIRLLVQKVKKSAECERSVGLGVMGLAYMLQRA 377

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGVFPIDSIG 727
            + +A  ++ E   E    +   + +AS  L  ERG     +  L    + G+ P     
Sbjct: 378 DMVFAGEDSREYELEFFRQLKDFSHAASCRLGIERGVPPDIQAYLEKCKELGIEP----- 432

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                 D   +NR                  RN + +AIAP A  + I   S SI+  Y 
Sbjct: 433 ------DPYWVNR------------------RNLHLLAIAPNANSSVILNTSASIEFMYS 468

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N+Y +   +G F V N +L   L+ +    E + + +K   GS+  ++ + +  K+++A 
Sbjct: 469 NVYSREMRTGTFEVRNRYLEKLLESQGRNTEEVWNQIKADSGSVKGLDFLTEHQKRVYAV 528

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKTTYYLR 904
             E++ M ++  A  RQ +I QAQSLNL+   P G  ++F   ++  AW +G+K+ YY +
Sbjct: 529 PEEMNMMDVVVRAGERQVYICQAQSLNLFF--PPGSDINFVMAVHILAWKVGVKSLYYYK 586

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           + S   +EK + K    KL 
Sbjct: 587 TESEVKIEKPSDKTEREKLT 606


>gi|304406355|ref|ZP_07388011.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304344413|gb|EFM10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 694

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 170/693 (24%), Positives = 300/693 (43%), Gaps = 86/693 (12%)

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T+      Y + + RY  E V+         +F         K+  D+A +     +
Sbjct: 47  EQVTYMIQNDFYEDVYARYTPEQVEEIFASTHGFNFQFSSYMAASKFYTDYAMKSDDRTV 106

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLF 359
             ++Y       R+ M       VA+ L   + +K KR AV     +       +TPT  
Sbjct: 107 YMEKY-----PDRVAM-------VALHLGEGDFDKAKRLAVS----MMEQRVQPATPTFL 150

Query: 360 NSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+G +R  ++ SCFL  + D L  I   L     L+K  GG+  + + +RG G  I G  
Sbjct: 151 NAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKLRGRGEPIKGVE 210

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G ++G++P LK+  D     +Q G+RKG+   Y   +  DV EFLD +K   D++ R   
Sbjct: 211 GAAKGIMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDVMEFLDSKKINADEKTRLKT 270

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           ++    +P+ F +   QN    +F P  +   + ++  + ++  E Y+       +K   
Sbjct: 271 LSIGLIVPNKFYELAAQNKPLVVFGPHSIHKAYGVHMDDMDLD-EMYDTLLADERVKKKS 329

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-- 595
            +SA  +  K+  +  E+G+P+I  +   N     + +G +  SNLCTEI  L  +SE  
Sbjct: 330 IMSAREMLVKIAMIQLESGYPYIMNRSNANKDHALKGIGAIKMSNLCTEIFQLQETSEIN 389

Query: 596 ---------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI----NCHT 642
                        CNL S+N++     N  D  K+  ++   +  L +V D+    N   
Sbjct: 390 DYGQSDVIRRDISCNLASMNIV-----NVMDLGKIKESVHEGIEGLTSVSDMAQIANAPG 444

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I KA +  H+   +GLG M     L    I Y S EA + A      ++F+++  S+ +A
Sbjct: 445 IRKANEELHS---VGLGAMNLNGYLAKNKIAYESEEARDFARTFFMMMNFYSLEKSMHIA 501

Query: 703 QERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRV 753
           ++RG  +  F+ S +  G +  D   L  + R + A        M+  S   W ELK +V
Sbjct: 502 RDRGETFKGFEQSEYANGNY-FDRY-LSTDFRPQTARALELFGEMHIPSPDDWAELKAQV 559

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ ++  +AIAPT +I+ I   + S+ P                     +V  ++ R
Sbjct: 560 MKHGVYHAYRLAIAPTQSISYIQNATSSVMP---------------------VVEHIETR 598

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              +      + Y          +  D    + +A+++D   +I+  +   + IDQ  S 
Sbjct: 599 TYANSTTYYPMPY----------LAQDNYFFYKSAYQMDQFKVIDMIAEISQHIDQGIST 648

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L+++ + + ++L   Y  A   GLK+ YY R+
Sbjct: 649 VLHVNSDVTTRELSRYYIYAAKKGLKSLYYTRT 681


>gi|251782829|ref|YP_002997132.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391459|dbj|BAH81918.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323127634|gb|ADX24931.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 719

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 259/590 (43%), Gaps = 74/590 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TP+  N+G +R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R 
Sbjct: 151 YQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLRE 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K  
Sbjct: 211 AGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKEN 270

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E  A
Sbjct: 271 ADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDELVA 330

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI- 588
           +    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 331 NPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--GKIIMSNLCSEIL 386

Query: 589 ------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                  +N + E   +     CNLGS N+L    +  F       +I+   R L  V D
Sbjct: 387 QVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFVTD 441

Query: 638 INC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++  + 
Sbjct: 442 SSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNYWTLV 501

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RTSRLP----WDEL 749
            S  +A+ER   +  F  S +  G +    +      + +L  +  +   +P    W+ L
Sbjct: 502 ESNNIARERQTTFVGFDKSKYADGTYFDKYVTGQFVPKSDLVKDLFKDHFIPQASDWEAL 561

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  V+  G+ + N +A+AP  +I+ I   S SI P  Q +                   E
Sbjct: 562 RDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------------------E 602

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            +Q     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ
Sbjct: 603 ERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 652 GLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|255102107|ref|ZP_05331084.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-63q42]
          Length = 699

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 164/649 (25%), Positives = 294/649 (45%), Gaps = 79/649 (12%)

Query: 291 FAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSS 348
           F F+ Y+     Y  Y L  N  + E+ + +  +V +  L L   +K+  A+   + +  
Sbjct: 84  FEFQSYMSANKFYQNYALKSNDGK-EILETYNDKVLIVALTLGNGDKD-LALNLADKIVK 141

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + +
Sbjct: 142 QEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKL 201

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +K
Sbjct: 202 RASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKK 261

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y++
Sbjct: 262 INADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWYDK 320

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC E
Sbjct: 321 LVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCCE 379

Query: 588 ITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +  E               CNLGS+N+      N  D   + ST+ TA+R L  V
Sbjct: 380 IFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFV 434

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++
Sbjct: 435 ADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYS 494

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------- 744
           I AS+++A ER   +  F  S + +G     +  +L++  ++  + ++ ++         
Sbjct: 495 IKASMKIAIERNQTFEGFDKSEYVKG----RNSKVLSKYYEQSYLPKSEKVRALFEGIYI 550

Query: 745 ----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++   GD T
Sbjct: 551 PTKEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRT--YGDST 608

Query: 801 VVNS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            +    FL N+             ++ Y+                   +A+ +D   +I+
Sbjct: 609 TIYPMPFLTND-------------NMLYYQ------------------SAYRMDMRKVID 637

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  L++ DE + + +   Y  A+  GLK+ YY R++
Sbjct: 638 LVATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|294676157|ref|YP_003576772.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294474977|gb|ADE84365.1| ribonucleoside-diphosphate reductase NrdJ-1
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 755

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 158/592 (26%), Positives = 263/592 (44%), Gaps = 90/592 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           RVA  LA  E +      +FY  L  F F+ +   L  +GT R   L +CF + T+PD +
Sbjct: 37  RVARDLASVEADPAHWEPKFYAALEDFKFLPAGRILAGAGTGRAVTLFNCFVMGTIPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  AGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAAVKGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+  ++    D  R    N +  I D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFITAKQ----DSARLRMFNLSVLITDAFMEAVKADGPW- 211

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                             E+ ++           KV+  ++A  LW K++   ++   P 
Sbjct: 212 ------------------ELVFDG----------KVYHTLNARDLWNKIMRATYDFAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-Q 615
           + F D  N  +   ++  + ++N C E  L         C LGS+NL     A F +  +
Sbjct: 244 VIFIDRINAMNNLAYLEQIAATNPCGEQPL----PPYGACLLGSVNLARLVTAPFTDQAR 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L   +RT+VR++DNV+D +   + + +      R IGLG+ G   AL +L + Y 
Sbjct: 300 LDLAALDELVRTSVRMMDNVVDASRFPLPQQQAEAANKRRIGLGVTGLADALLMLGLRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
             +A    +  M+ I+  A  ASV+LA+E+GA+  F                       E
Sbjct: 360 DDKAAAQTEAWMKAIARAAYLASVDLAREKGAFPLFDA---------------------E 398

Query: 736 LAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
             ++  + L  DE +++ + T G+RN+   +IAPT TI+   G VS  I+P +   Y + 
Sbjct: 399 KYLSSGNMLQMDEDVRQAIATHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAYTRK 458

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +  D +     +V+   +  LW      D+K      G++      L      A  + P
Sbjct: 459 VLQKDGSRTEEEVVDYAVK--LW-----RDMK------GDVA-----LPAYFVNAQTLAP 500

Query: 854 MWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
           M  ++  +  QKWID   ++++N  +D  S      +Y  A+  G K  TTY
Sbjct: 501 MDHVKMQAAAQKWIDSSISKTINCPVDI-SFDDFKDVYMAAFESGCKGCTTY 551


>gi|257373021|ref|YP_003175795.1| ribonucleotide-diphosphate reductase subunit alpha [Halomicrobium
           mukohataei DSM 12286]
 gi|257167745|gb|ACV49437.1| ribonucleoside-diphosphate reductase, alpha chain [Halomicrobium
           mukohataei DSM 12286]
          Length = 564

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 156/583 (26%), Positives = 250/583 (42%), Gaps = 107/583 (18%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A +FY+ +S   +  ++P   N G       SCF + + D++  I     E   + K  G
Sbjct: 62  ADKFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDNMESILYTQAEVGEMTKLGG 121

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  G+ I   NGKS G   F ++ +     V+QG  R+G    Y++  H D
Sbjct: 122 GTSGYFGEIRPRGSPIT-NNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDD 180

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           ++E+L+++                                      D V D++  YG   
Sbjct: 181 LDEWLNIKTEG-----------------------------------DPVQDIY--YG--V 201

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
            I  + +    D  E K          W +++      G P+I F+D  N   PQ +   
Sbjct: 202 IIGDDWFRAMVDGDEEKR-------ETWAEIIETRINIGVPYIIFRDNMNDGKPQVYKDR 254

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              ++ SNLCTEI L ++ +E+ VC L S+N L       +D  K    + T  R LD V
Sbjct: 255 GYEINGSNLCTEIALPATPDESFVCCLSSMNAL------HYDEWKDTDAVETLTRFLDAV 308

Query: 636 IDI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           I+           +E+  +    HRA+G+G++G+ S L    IP+ S EA+E  +     
Sbjct: 309 IEEFIQEAEGTQFMERPVRFAKRHRAVGIGVLGWHSYLQSEMIPFDSMEAMEKNEAIFRT 368

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   +   S  LA E G     +G                                    
Sbjct: 369 IKERSYEESRRLADEFGEPEVLEG------------------------------------ 392

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+  M++APT + + I G VS SI+P   N +V+       T  N FL  
Sbjct: 393 ------YGRRNATTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEA 446

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            LK+R   +  +   +  +DGS+ +++ + D+ K++  T  EI  M +I  A++RQK ID
Sbjct: 447 ILKERGRDEREVWDSIAQNDGSVQHLDCLTDEEKEVFKTFAEIPQMAIINQAAQRQKHID 506

Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           QAQSLN+ +D  E S K+++ +Y +AW  G+K+ YY  S +A 
Sbjct: 507 QAQSLNVSIDPSEVSVKEINQLYIEAWKKGVKSLYYQHSVNAA 549


>gi|46519448|gb|AAT00096.1| JM119 [Macaca fuscata rhadinovirus]
          Length = 788

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 176/708 (24%), Positives = 296/708 (41%), Gaps = 90/708 (12%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVA 325
           L HE+ +D  L        Y       YL     YD Y L  +GS    E     FMRVA
Sbjct: 94  LKHEAALDGLLQDFKQSKAYANLVNCGYLSAVRFYDTYVLRTHGSSPIFESVAQMFMRVA 153

Query: 326 MGLA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHP 366
           + +A        L++T     + E    E Y +  +FH++      C+TP L ++G R  
Sbjct: 154 VFVACQCIKFPCLRKTLRHLVQSETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGG 213

Query: 367 QLSSCFL--TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           QLSSCF+   ++  +   +    +E + L     G+G D   V     H        + +
Sbjct: 214 QLSSCFILKPSMATENKTLKALHEEMSPLLASKSGVGID---VSSFAEH--------KNI 262

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              LK+ N      N    R     AY+E WH  + +FL+ +    +++ R H++     
Sbjct: 263 TSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGVC 320

Query: 485 IPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           +P+LF +    N    W LF+P+   +L  LYG EFEI    Y R    G  K    +  
Sbjct: 321 VPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLPL 375

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601
            ++   ++  + +TG P++  K+  N     +  G  ++ SNLC EI +     + +VCN
Sbjct: 376 KSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVCN 434

Query: 602 LGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           L +I+L                  +  F ++ L   +  AV +++  I       E  ++
Sbjct: 435 LANISLPKCLRPPRGKSGVEPGKGDVTFGFELLDDAVEAAVIIVNACILGGTAPTESVRR 494

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE--LAQERG 706
                R++G+G+ G       L   Y   E+ ++  E  + + F A+  S E  L  E  
Sbjct: 495 -GQKERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMYFAAVHTSHEIVLLGEGT 553

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  ++ S   QGVF         +  D +  +      W++L + +   G+ NS  +A+
Sbjct: 554 PFHGWERSRLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQFLAL 606

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA  + + G +++  P + N+  K     +    N      +K  DL        ++ 
Sbjct: 607 MPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------RTVRR 660

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           + G + +      D  KI  TAF+  P+  +E A  R  ++DQ+QSLN +L E    +  
Sbjct: 661 YGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQATRAS 720

Query: 887 FI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           +I       + +GLKT  YY R      ++K T      KLNA+   D
Sbjct: 721 YIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLD 756


>gi|116490255|ref|YP_809799.1| ribonucleotide-diphosphate reductase subunit alpha [Oenococcus oeni
           PSU-1]
 gi|116090980|gb|ABJ56134.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Oenococcus oeni PSU-1]
          Length = 723

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 153/605 (25%), Positives = 273/605 (45%), Gaps = 86/605 (14%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR 
Sbjct: 153 FQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNVRE 212

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +      + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K  
Sbjct: 213 AGASVMRLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKKEN 272

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYER 527
            D++ R   ++    +PD F +   +     LFSP   +D+  +YG  F      + Y+ 
Sbjct: 273 ADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSP---ADVEKVYGVPFNYVDLTKEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+E
Sbjct: 330 MVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPV--YGKVVTSNLCSE 386

Query: 588 IT-------LNSSSEETAV-----CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLD 633
           I        +N+  E T +     CNLGSIN+  + H A    D+ K   T+  A+  + 
Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINIDNMMHTA----DFGKSVETMTRALTFVS 442

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
              DI+   +   +  N    AIGLG MG  + L    I Y    A++  +      +++
Sbjct: 443 ESSDISV--VPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYY 500

Query: 694 AISASVELAQERG-AYSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLP--- 745
            + AS ++A+ERG ++  F+ S +  G     + +   G   +   +L  +    +P   
Sbjct: 501 TLLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDY--HVPTIE 558

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK+ V   G+ N+   A+APT +I+ +   + S+ P                    
Sbjct: 559 DWQRLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQP-------------------- 598

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +V+ ++ R    E M   + Y    + N E +P      + +A+++D   +I++ +  Q
Sbjct: 599 -IVSRVEAR---AEGMTGRVFYPANGLSN-ETLP-----YYVSAYDLDQRKVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ + 
Sbjct: 649 EHVDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTD 708

Query: 909 TSVEK 913
            + E+
Sbjct: 709 DNTEQ 713


>gi|327198710|emb|CCA61411.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 580

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 175/655 (26%), Positives = 279/655 (42%), Gaps = 124/655 (18%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           YE D  ++ +GL  + D Y      S    PQ     V       +  + +     Y   
Sbjct: 6   YEMDKLYDSVGLLRMKDSYLSGGEAS----PQDRLASVCNQFGTDDDHRRR----LYEYA 57

Query: 347 SSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S      S+P L +N   +     SC+L  + D + G+   L E   L+   GG+     
Sbjct: 58  SKHWLSLSSPLLGYNKDKKMSYPISCYLLYLHDTVEGLIDTLSEANHLSVCGGGVS---- 113

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
               +   I   N KS GV+   K  +   +A  QG +R G+   YL+  H ++  F+D+
Sbjct: 114 ----VKMGIRPLNDKSLGVVSHCKTYDSCVLAYKQGSRR-GSYAMYLDVSHPEILAFIDI 168

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFM---KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           RK TGD   R  +++ A  + D FM   +R T++      S D+  DL D          
Sbjct: 169 RKPTGDYNMRCLNIHNAICLSDKFMEIIERCTEDP-----SADDSWDLVD---------- 213

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-V 579
                    G +K  + +SA  +W+K++ M  +TG P++ F D CN  +   Q+  G+ +
Sbjct: 214 ------PSTGVVK--QTVSAKLIWQKIIEMRMQTGEPYLCFVDACNRDMNPYQKARGMKI 265

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVI- 636
             SNLCTE+ + ++   +++C L S+N+  +  + NN+         I   + +LDNV+ 
Sbjct: 266 EQSNLCTEVIVPTNETRSSLCCLASVNIEKYEEWKNNE-------RFIGDTMEMLDNVLT 318

Query: 637 ----DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                   H  ++   S    R IG+G++GF S L  + +   S EA  +  E  ++++ 
Sbjct: 319 EFERKATSHRFDRVNDSVKKERNIGIGVLGFHSYLQSVGVSIESEEAQRVNIEIFKWLNE 378

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
                ++EL   RG      GS                                      
Sbjct: 379 TCDKYNLELGSRRGTPEDIAGS-------------------------------------- 400

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN--- 808
               G R +  MA+APTAT + I G  S SI+P   N+Y +  +SG     N  L     
Sbjct: 401 ----GRRFAYTMAVAPTATTSIIMGNTSPSIEPFRANVYRQDTVSGSQFNKNKNLDRLFD 456

Query: 809 ------ELKQRDLWDEAMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESA 860
                 +LK + LW     + +  +DGS+ +++   I    K +  T  E++   L+E A
Sbjct: 457 SKGYGPKLKAK-LW-----TSIVANDGSVQHLDERFITKSEKDVFKTFIEVEQSKLVELA 510

Query: 861 SRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           + R K+IDQ QSL L    DEP    +  I+ QAW  GLKT YYLRS   +  +K
Sbjct: 511 AGRHKYIDQGQSLTLTFGPDEPVA-NIHRIHLQAWKSGLKTMYYLRSAKISRADK 564


>gi|7330058|gb|AAF60047.1|AF210726_68 large ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 788

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 187/744 (25%), Positives = 308/744 (41%), Gaps = 110/744 (14%)

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMG 327
           HE+ +D  L        Y       YL     YD Y L   GS    E     FMRVA+ 
Sbjct: 96  HEAALDGLLQDFKQSKAYTNLVNCGYLSAVRFYDTYVLRTQGSSPIFESVAQMFMRVAVF 155

Query: 328 LA--------LKET-----EKEKRAVEFYNLLSSFHFM------CSTPTLFNSGTRHPQL 368
           +A        L+ET     E E    E Y +  +FH++      C+TP L ++G R  QL
Sbjct: 156 VACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQIVCCATPVLRSAGLRGGQL 215

Query: 369 SSCFL---TTVPDDLYGIFGALQE--NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           SSCF+   +   +D      AL E  + +LA  SG +G D   V     H        + 
Sbjct: 216 SSCFILKPSMATED--KTLKALHEEMSPLLASKSG-VGID---VSSFAEH--------KN 261

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +   LK+ N      N    R     AY+E WH  + +FL+ +    +++ R H++    
Sbjct: 262 ITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAK--MPENQERCHNLFQGV 319

Query: 484 WIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            +P+LF +    N    W LF+P+   +L  LYG EFEI    Y R    G  K    + 
Sbjct: 320 CVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAAG--KHSSSLP 374

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVC 600
             ++   ++  + +TG P++  K+  N     +  G  ++ SNLC EI +     + +VC
Sbjct: 375 LKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEI-VQQPEGQASVC 433

Query: 601 NLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           NL  I+L                  +  F ++ +   +  AV +++  I       E  +
Sbjct: 434 NLAHISLPKCLRPHRGESGVEPGKGDVTFGFELIDDAVEAAVIIVNACILGGTAPTESVR 493

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R++G+G+ G       L   Y   ++ ++  E  + + F A+  + E+    G 
Sbjct: 494 RGQE-ERSMGIGVQGLADVFAELGFGYLDADSAKLDLEIFQAMYFTAVQTTHEIVL-LGE 551

Query: 708 YSSFKGSLWD-----QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            + F+G  W+     QGVF         +  D +  +      W++L + +   G+ NS 
Sbjct: 552 GTPFRG--WERNQLAQGVFHW-------QTWDGVKPSHPPLERWEQLGRSIAQHGIFNSQ 602

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+ PTA  + + G +++  P + N+  K     +    N      +K  DL       
Sbjct: 603 FLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL------R 656

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            ++ + G + +      D  KI  TAF+  P+  +E A  R  ++DQ+QSLN +L E   
Sbjct: 657 TVRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNFFLKEEQA 716

Query: 883 KKLDFI---YRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTH 936
            +  +I       + +GLKT  YY R      ++K T      KLNA+   D     +  
Sbjct: 717 TRASYIRDLLLTGYRLGLKTMLYYCR------IQKQT------KLNALQCLDQVVGDNIS 764

Query: 937 SLGIPSSCTSDTE------CEVCQ 954
           S G  S+C    +      C  CQ
Sbjct: 765 SEGAESNCVQKADGERTKVCLACQ 788


>gi|187919646|ref|YP_001888677.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
 gi|187718084|gb|ACD19307.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
          Length = 861

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 160/607 (26%), Positives = 273/607 (44%), Gaps = 90/607 (14%)

Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA G+A  E +  + +VE        +  L +   M +  T   +      L +CF+
Sbjct: 51  FKRVARGVAEAEPQALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105

Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D         L GI+ AL + A   +  GG+G +++ +R  GA +H T+  + G  
Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++  W L        +H       + A ++  ++ D   + V+ +  A A+
Sbjct: 222 TDEFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPARAI 271

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327

Query: 606 NL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL    +  FA  +     FD+D LA   RT VR LDNV+D+    +++    +   R I
Sbjct: 328 NLTRFVIDPFAQMKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLQQQYDESRAKRRI 387

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF-KGSL 715
           G+G  G    L +L + Y S E  + A    + +   A  ASVELA+ERGA+  F  G  
Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIAQLMRDEAYRASVELARERGAFPLFDAGRY 447

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
            + G F                    SRLP D +K+ ++  G+RNS+ ++IAPT T+  A
Sbjct: 448 LEAGTF-------------------ASRLPED-IKEAIRRDGIRNSHLLSIAPTGTVSLA 487

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +  +  D     SF V +   R L+ E             G+
Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GD 534

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
             ++PD       +A E+     ++  +  Q ++D   ++++N+  D P  +  + +Y  
Sbjct: 535 TNKLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYFD 589

Query: 892 AWLMGLK 898
           AW  GLK
Sbjct: 590 AWKNGLK 596


>gi|217969781|ref|YP_002355015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
 gi|217507108|gb|ACK54119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
          Length = 957

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 246/556 (44%), Gaps = 73/556 (13%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +        GI+ AL + A   +  GG+G D++ +R  GA + GT   
Sbjct: 95  LINCFVQPVGDSVTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVKGTASN 154

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + +++V + +   V   G R+GA    L   H D+EEF+   K+ GD      + N
Sbjct: 155 ASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDEGD----LTNFN 209

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +         +V  +H     E   A   Y+R  D G + V+RK+
Sbjct: 210 ISVGVTDPFMQAVEADG--------DVELVHKAEPTEEVKAAGAYQR--DDG-MWVYRKV 258

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW +++   ++   P I F D  N  +   +   + ++N C E  L         C
Sbjct: 259 RARELWDQVMRSTYDHAEPGILFLDRMNADNNLYYCETIEATNPCAEQPL----PPYGCC 314

Query: 601 NLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGSINL     N      +FDY      +  ++R+LDNV+++    + +      + R 
Sbjct: 315 CLGSINLTLFVKNPFGDKAEFDYAGFGKVVDVSIRMLDNVLEVTHWPLAQQHAEAQSKRR 374

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G   AL +L   Y + EA E A +  EF+   A  AS ELA+ERGA+  F   L
Sbjct: 375 VGLGFTGLGDALIMLGQRYDTAEAREEARKISEFMRNRAYLASSELARERGAFPLFNADL 434

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
           +  G                   N  SRLP D +K +++  G+RNS+ ++IAPT TI  A
Sbjct: 435 YLSG------------------GNFASRLPAD-VKDKIRKHGIRNSHLLSIAPTGTISLA 475

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P +   Y +     D T    + V +   R          L  H G  GN
Sbjct: 476 FADNASNGIEPPFSYTYTRRKRMADGT-FKEYAVEDYAWR----------LYKHLG--GN 522

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           ++++P        TA EI      +  +    ++D   ++++N+  D P  +  D +Y  
Sbjct: 523 VDKLPQSF----VTALEISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFED-LYLT 577

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  GLK     R  S
Sbjct: 578 AWKAGLKGLATYRPNS 593


>gi|89053442|ref|YP_508893.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
 gi|88862991|gb|ABD53868.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
          Length = 757

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 153/594 (25%), Positives = 255/594 (42%), Gaps = 94/594 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E +       FY  L  F ++ +   +  +GT R   L +CF + TVPD +
Sbjct: 37  RIAKALAAVEDDSATWEETFYTALEDFKYLPAGRIVAGAGTGRSVTLFNCFVMGTVPDSM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E+F+  ++    D  R    N +    D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEDFIAAKQ----DPARLRMFNMSVLATDPFMEAVKDDGPWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L   D                             KVFR + A  LW +++   ++   P 
Sbjct: 213 LVFGD-----------------------------KVFRTVQARDLWNRIMRATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           + F D  N  +   +   + ++N C E  L         C LGS+NL A   ++ F    
Sbjct: 244 VIFIDRINAENNLNYAETICATNPCGEQPL----PPYGACLLGSVNL-AQLVSDPFTDTA 298

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D  KLA    TA+R++DNV+D +   ++   +     R IGLG+ G   AL +  + Y
Sbjct: 299 DLDPIKLADLTATAIRMMDNVVDTSRFPLDAQAQEAQAKRRIGLGVTGLADALAMCRLRY 358

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA    ++ M  I+  +  AS  LA E+GA+  F  + + +                
Sbjct: 359 GSEEAAAKTEDWMARIANASYRASALLAAEKGAFPLFDAAEYAKAPM------------- 405

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                   RL  D ++  +   G+RN+   +IAPT TI+   G VS  I+P + N Y + 
Sbjct: 406 ------VQRLDAD-VQALIAEHGLRNALLTSIAPTGTISLFAGNVSSGIEPIFANAYTRK 458

Query: 794 NMSGDFTVVNSFLVN--ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            +  D T     +V+    K RD+  +  + D   +  ++  ++ +     ++ A A   
Sbjct: 459 VLQVDGTRTEEEVVDFAVAKWRDMHGDTPLPDYFVNAQTLAPLDHV-----RMQAAA--- 510

Query: 852 DPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
                       Q WID   ++++N+  D  S +    +Y +A+  G K  TTY
Sbjct: 511 ------------QPWIDSSISKTINVPADI-SFEAFKDVYAEAYATGCKGCTTY 551


>gi|326333060|ref|ZP_08199311.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
 gi|325949134|gb|EGD41223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
          Length = 571

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 158/589 (26%), Positives = 256/589 (43%), Gaps = 117/589 (19%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F+  + +     STP L N GT      SC  + V D ++G +  L+E A+L++   G  
Sbjct: 76  FFEAIWNGWLSPSTPVLSNLGTDRGLPVSCEGSYVEDSVWGFYETLKEAAILSQNGFGTS 135

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIP----FLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
                VR  GA     NGK+ GV+P    F+++ N     ++QG  R+G+   YL   H 
Sbjct: 136 AYLGDVRPRGAKFS-DNGKANGVVPVFCNFVEMTNQ----ISQGATRRGSWAGYLPVDHP 190

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D  E  DL                      +F +   +N GW                  
Sbjct: 191 DFYELADL----------------------IFREPANKNVGWI----------------- 211

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW-ITFKDPCNIRSPQQHV 576
           F  A+ +     D+  ++ ++++  +        ++   G+ W +   +     S Q + 
Sbjct: 212 FSQAFIDRMLAGDKDALERYQRVLKI-------RVVLGKGYIWKVDTVNAAQTESYQANG 264

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +SNLC+EITL S  + +  C L S+NL      + +D  K   T   A   LD V 
Sbjct: 265 LANKASNLCSEITLFSDEDHSYTCVLSSLNL------STYDEWKDQDTAYVATVFLDAVA 318

Query: 637 DI------NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +           +E+A +     R++GLG+MG+   L    +P+ S +A  +  +  E I
Sbjct: 319 EAFLRKARTIRGLERAVRYTEKARSLGLGVMGYHDYLQKQRVPFESDKAAALNKDIFERI 378

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDEL 749
           S  A +AS                 W                     M   + +P W   
Sbjct: 379 SSRADAAS----------------RW---------------------MGSVAGIPEW--- 398

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                 +G RNS+ MAIAPT + A I G  SQ I+P   N++ ++  +G+    N  LV 
Sbjct: 399 -----CVGRRNSHLMAIAPTMSTAVIVGGTSQGIEPYVANVWNQTTSAGEMPRANQNLVE 453

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            +K+R ++D+A ISD+  H GS+ ++  + D  K++  T +EID   L+  AS RQ +ID
Sbjct: 454 VMKERGVYDQAHISDIIDHGGSVQHVSWLDDHEKEVFRTGYEIDQEILLARASDRQVYID 513

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWL-MGLKTTYYLRSRSATSVEKST 915
           QAQSLNL+   + + + +  I++ A L   +K+ YYLRSR+     K +
Sbjct: 514 QAQSLNLFFQADATPQYISKIHKLALLDPNIKSLYYLRSRAGIQASKQS 562


>gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 822

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 260/598 (43%), Gaps = 98/598 (16%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + R+A  LA  E + +    +FY  L+ F ++ +      +GT R   L +CF + T+PD
Sbjct: 35  WARIAKSLASVEKDPKAWEPKFYKALNDFRYLPAGRITAGAGTDRSVTLFNCFVMGTIPD 94

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 95  TMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAVVKGVAADASGPLSFMDVWDAMCRTI 154

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H DV +F+  +     D  R    N +  I D FM+ V  +  
Sbjct: 155 MSAGSRRGAMMATMRCDHPDVMDFITAKS----DAARLRMFNMSVLITDPFMEAVKADTP 210

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L    EV                              R + A  LW  ++   +    
Sbjct: 211 WDLIWDGEV-----------------------------VRTVQARDLWDSIMQSTYSHAE 241

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN 614
           P + F D  N  +   +V  + ++N C E  L         C LGSINL    L  FA+ 
Sbjct: 242 PGVIFIDRINTMNNLNYVETIAATNPCGEQPL----PPYGACLLGSINLARLVLNPFADA 297

Query: 615 Q-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D ++L   +  AVR++DNV+D +   +E   +     R IGLG+ G   AL +  + 
Sbjct: 298 ATIDDNELTELVGLAVRMMDNVVDASKFPLEAQAQEAVAKRRIGLGVTGLADALLMTGLR 357

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y SPEA    +  M+ I+  A  ASV+LA+E+GA+  F     D+ +   + + +  +VR
Sbjct: 358 YGSPEAARQTEHWMKAIARAAYLASVDLAREKGAFPLFDA---DKYLASGNMMQMDEDVR 414

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVK 792
           D                  ++  G+RN+   ++APT TI+   G VS  I+P +   Y +
Sbjct: 415 DA-----------------IREHGIRNALLTSVAPTGTISLYAGNVSSGIEPVFAYAYTR 457

Query: 793 SNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +  D +     +V+   +  RDL  +A + D   +  ++  ++ +     ++ A A  
Sbjct: 458 KVLQKDGSRTEEEVVDYAVKMWRDLKGDAELPDYFVNAQTLPAMDHV-----RMQAAA-- 510

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLK--TTY 901
                        QKW+D + S  + + E     +DF     +Y  AW  G K  TTY
Sbjct: 511 -------------QKWVDSSISKTINVPE----DIDFQSFKDVYMAAWDQGCKGCTTY 551


>gi|237798941|ref|ZP_04587402.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021795|gb|EGI01852.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 226

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 128/196 (65%), Gaps = 1/196 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  LTEQ      +   
Sbjct: 32  LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMP 91

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  RA ++  +      P ++I 
Sbjct: 92  SGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPDEQ-VQAHPSIRIT 150

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  RL  IV EAC GL +V + ++ +ET KN+YDG++  D+ TAL+ ++RT
Sbjct: 151 LADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTART 210

Query: 209 LIEKEPNYAKVTARFL 224
           L+E+EPNY+ VTAR L
Sbjct: 211 LVEREPNYSFVTARLL 226


>gi|91778404|ref|YP_553612.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
 gi|91691064|gb|ABE34262.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
          Length = 861

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 159/607 (26%), Positives = 273/607 (44%), Gaps = 90/607 (14%)

Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA G+A  E    + +VE        +  L +   M +  T   +      L +CF+
Sbjct: 51  FKRVARGVAEAEPPALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105

Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D         L GI+ AL + A   +  GG+G +++ +R  GA +H T+  + G  
Sbjct: 106 QPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++  W L        +H       + A ++  ++ D   + V+ +  A  +
Sbjct: 222 TDEFMRAVEEDQPWQL--------VHRAEPSPAQRAADDVRQRED--GLWVYSERPAREI 271

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327

Query: 606 NL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL    +  FA        FD+D LA   RT VR LDNV+D+    + +  + +   R I
Sbjct: 328 NLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVLDVTLWPLPQQYEESRAKRRI 387

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A    + +   A  ASVELA+ERGA+  F  + +
Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVGIAQLMRDEAYRASVELARERGAFPLFDAARY 447

Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
            + G F                    SRLP D +K+ ++  G+RNS+ ++IAPT T+  A
Sbjct: 448 LETGTF-------------------ASRLPED-IKQAIRRDGIRNSHLLSIAPTGTVSLA 487

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +  +  D +   SF V +   R L+ E             G+
Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGS-RESFDVEDYAYR-LYRELG-----------GD 534

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           + R+PD       +A E+     ++  +  Q ++D   ++++N+  D P  +  + +Y  
Sbjct: 535 VNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYLD 589

Query: 892 AWLMGLK 898
           AW  GLK
Sbjct: 590 AWKNGLK 596


>gi|209516306|ref|ZP_03265163.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
 gi|209503242|gb|EEA03241.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
          Length = 861

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 160/602 (26%), Positives = 267/602 (44%), Gaps = 80/602 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378
           F RVA G+A  E  + + +VE   + +  H       + ++        L +CF+  V D
Sbjct: 54  FRRVARGVAEAEPPELRASVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 113

Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                    L GI+ AL + A   +  GG+G +++ +R  GA +H TN  + G   ++ V
Sbjct: 114 SIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTNSAASGPCSYMDV 173

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  + D FM
Sbjct: 174 FDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGVTDEFM 229

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +  W L    E S      G           RQ + G + V+ +  A A+W +++
Sbjct: 230 RAVENDEPWQLVHRAEPSPALRSAGDV---------RQREDG-LWVYSEHEARAIWDRIM 279

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607
              ++   P I F    N  +  + V  + ++N C E  L +       CNLG +NL   
Sbjct: 280 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 335

Query: 608 ----LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                A     Q  FD+D LA   RT VR LD+V+D+    + +    +   R IG+G  
Sbjct: 336 VVDPFAQLQGRQPSFDWDGLAWRTRTQVRFLDDVLDVTLWPLPQQYDESRAKRRIGVGFT 395

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720
           G    L +L + Y S E  + A      +   A  ASV+LA+ERGA+  F  + + + G 
Sbjct: 396 GLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVDLAKERGAFELFDAARYLETGT 455

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778
           F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  A     
Sbjct: 456 F-------------------ASRLP-DDIQQAIRRDGIRNSHLLSIAPTGTVSLAFADNA 495

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++   Y ++ M  D     SF V +   R L+ E             G++ R+P
Sbjct: 496 SNGIEPAFSWTYTRTKMMADGG-RESFDVEDYAYR-LYRELG-----------GDVTRLP 542

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           D        A E+     ++  +  Q ++D   ++++N+  D P     + +Y  AW  G
Sbjct: 543 D----YFVNALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-DAFESLYFDAWKSG 597

Query: 897 LK 898
           LK
Sbjct: 598 LK 599


>gi|253573377|ref|ZP_04850720.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846905|gb|EES74910.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 864

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 210/434 (48%), Gaps = 35/434 (8%)

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 146 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 205

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +  + 
Sbjct: 206 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 261

Query: 487 DLFMKRVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           + FMK V ++  W L  PD    D ++++  + +      + +AD  ++  +R + A  +
Sbjct: 262 NAFMKAVKEDLDWDLVFPDTTYEDYNEVWDGDLD------KWKADGRKVIHYRTVKAREI 315

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++
Sbjct: 316 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 371

Query: 606 NLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           NL   +   + D  +D+LA+T R +VR LDNVI+   +  E+ +K+    R +GLG MG 
Sbjct: 372 NLSKFYDEEKHDVAWDELATTTRYSVRFLDNVINKTPYHFEENEKNQKKERRVGLGTMGL 431

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F+   + Q  F  
Sbjct: 432 AELMIKLNIRYGSPESLEFLDKLYGFIAKEAYLASADIAEEKGSFPAFEADKFLQSGF-- 489

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                          N T   P  E+ + V+T G+RN   +  APT +   + G S  I+
Sbjct: 490 -------------MKNMTEVYP--EVGEAVRTKGIRNVTIITQAPTGSTGTMVGTSTGIE 534

Query: 784 PSYQNLYVKSNMSG 797
           P +   Y + +  G
Sbjct: 535 PYFAFKYYRQSRLG 548


>gi|146322250|ref|YP_001174721.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis]
 gi|145968741|gb|ABQ00019.1| putative ribonucleotide reductase subunit alpha [Lactococcus
           lactis]
          Length = 718

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 157/608 (25%), Positives = 267/608 (43%), Gaps = 98/608 (16%)

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + 
Sbjct: 143 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EFL 
Sbjct: 203 SNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLS 262

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E 
Sbjct: 263 TKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE- 321

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+     GEI+    I+A  L +++  +  E+G+P+I   D  N  +P +  G +  SNL
Sbjct: 322 YDTMVANGEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTNPVK--GKIIMSNL 378

Query: 585 CTEI---------TLNSSSEETAV---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI          L+ S ++      CNLGS+N++     N  +      +I  A+R L
Sbjct: 379 CSEILQPQEPSILNLDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRAL 433

Query: 633 DNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D    + +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++
Sbjct: 434 TTVTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMN 493

Query: 692 FHAISASVELAQERG------AYSSFK-GSLWD-----------QGVFPIDSIGLLAEVR 733
           ++++ AS +++ E+        YS +  GS +D           + V  I    LL  + 
Sbjct: 494 YYSLKASHQISIEKNETFHNFEYSRYADGSYFDYYLAKKFHFTSEKVAKIFENILLPTIE 553

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D           W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +    
Sbjct: 554 D-----------WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLI---- 598

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                          E +Q     E  +  + Y    + N         + + TA+ +D 
Sbjct: 599 ---------------ENRQ-----EKKVGSIFYPAPYLSN------KTLRYYKTAYNMDQ 632

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--PSG--------------KKLDFIYRQAWLMGL 897
             +I+  ++ Q+ IDQ  SL +++    P G              + L+ +   AW  G+
Sbjct: 633 RKIIDIYAKAQQHIDQGMSLTVFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGI 692

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 693 KSLYYVRT 700


>gi|146966|gb|AAA24223.1| ribonucleoside diphosphate reductase B1 subunit precursor
           [Escherichia coli]
          Length = 776

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 166/612 (27%), Positives = 268/612 (43%), Gaps = 67/612 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++  T   + P          LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKA-TASLRPPA---------LY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPD 378
           + VA  L      +  + V+ FY+ +S+F    S PT   SG R P  Q SSC L    D
Sbjct: 174 ILVAACLFSNYPREGLQYVKRFYDAVSTFKI--SLPTPIMSGVRTPTRQFSSCVLIECGD 231

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTP-------------VRGLGAHIHGTNGKSQGVI 425
            L  I      +A++   S   G   TP              R + A    T     G  
Sbjct: 232 SLDSINAT--SSAIVKYVSQRAGIASTPGVFVRWVARFAVVKRSIPAAFRSTTFPDSG-- 287

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
                    + +    G+R G V  +   WH++VE  L L+ N G +  R   M+    I
Sbjct: 288 --------ESCSRRCAGRRCGNV--FYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQI 337

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISA 542
             L   R+ +    TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ A
Sbjct: 338 NKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKA 393

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSS 593
           V L+  M+     TG  +I   D C   SP    +  V  SNLC EI L        N  
Sbjct: 394 VELFSLMMQERASTGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDE 453

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           + E A+C L + NL A   NN  + ++LA     AVR LD ++D   + I  AK+     
Sbjct: 454 NGEIALCTLSAFNLGA--INNLDELEELAIL---AVRALDALLDYQDYPIPAAKRGAMGR 508

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  
Sbjct: 509 RTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNE 568

Query: 714 SLWDQGVFPIDS 725
           + + +G+ PID+
Sbjct: 569 TTYAKGILPIDT 580


>gi|167041120|gb|ABZ05880.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine microorganism HF4000_001A02]
          Length = 817

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 164/629 (26%), Positives = 272/629 (43%), Gaps = 98/629 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFM 352
           LG  +L ++Y           P   + R A  LA  E  K+ R     +FY +L  F F 
Sbjct: 57  LGADVLKNKYLAPWENH----PYELWQRQAKALASVERTKKLRDTWEKKFYYILEDFRFT 112

Query: 353 CSTPTLFNSGTRH--PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
                +  +G       L++C++  + DD +  I+  ++E A   KY GG G+D + +R 
Sbjct: 113 PGGRIMHGAGREDITTTLNNCYVVGIQDDSINSIYRTIEEEARTYKYGGGCGHDLSVLRP 172

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I GT G+S G + F+ + ++    + Q G+R GA    L   H D+E+F++++  T
Sbjct: 173 SGDAIKGTGGESCGPVGFMNLFSENTNTIAQHGRR-GANMQTLRVDHPDIEKFIEIK--T 229

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD     +  N +  +   FM+ V  ++                   EF++ + +     
Sbjct: 230 GDIHMVKYS-NISVLLTHRFMEAVENDS-------------------EFDLKWND----- 264

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                +V++ I A  LW K++     +  P + F D        ++   + S+N C E  
Sbjct: 265 -----QVYKTIKARQLWNKIIEHAHTSAEPGLLFWDTMIDYHNAEYCSPLVSTNPCAEQP 319

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINC--HTIEK 645
           L     +   CNLGSINL   F + + ++  D+   T+  A R LDNVID N   H +E 
Sbjct: 320 L----PDGGCCNLGSINL-ERFVDGEGNFMIDEFKDTVGIATRFLDNVIDYNLERHALES 374

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K +    R IGLG++G    L  + I Y S +A++  ++ M+     A   SVELA E+
Sbjct: 375 QKDNATKDRRIGLGILGLGDMLVRMGIKYDSDDAIQTVEQVMQIFRDGAYETSVELANEK 434

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ SF  + + +  F                      LP + L  ++K  G+RNS  + 
Sbjct: 435 GSFPSFDWAGYRKSQF-------------------IKNLPRN-LNNKIKENGIRNSTVLT 474

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT + A +  V+  I+P +   Y +                 +K+ D + +       
Sbjct: 475 VPPTGSGAIVARVTSGIEPIFATSYTR----------------RVKKNDGFGKTFNEYKV 518

Query: 826 YH---DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-S 881
           YH       GN E +PD +   H    +IDP   ++     QK+ID + S  + L E  +
Sbjct: 519 YHPIIKKLFGNDENLPDYVISAH----DIDPYSRVKMQGVIQKYIDSSISSTVNLKEDVT 574

Query: 882 GKKLDFIYRQAWLMGLK--TTYYLRSRSA 908
            + +  IY  A+  GLK  T Y   SR  
Sbjct: 575 LETVADIYMTAYKTGLKGITVYREGSREG 603


>gi|306830971|ref|ZP_07464133.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426994|gb|EFM30104.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 719

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 168/689 (24%), Positives = 298/689 (43%), Gaps = 91/689 (13%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHING 311
           PE+  +Y  + +++              LA DL+  + F F+ ++     Y +Y L  N 
Sbjct: 68  PEFISKYTPDFIES--------------LAKDLQ-AQGFRFKSFMAAYKFYQQYALKTND 112

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSS 370
            +  + ++   R+           E+ A +    +    +  +TP+  N+G +R  +  S
Sbjct: 113 GKYYL-ESIEDRILFNALYFADGNEELARDLATEMIHQRYQPATPSFLNAGRSRRGEFVS 171

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL +V DD+  I  ++     L++  GG+G   + +R  GA I G  G + GV+P +K+
Sbjct: 172 CFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKL 231

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R+GA   YL+ +H D+  FL  +K   D++ R   ++    +PD F 
Sbjct: 232 FEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKKENADEKIRVKTLSLGITVPDKFY 291

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LFSP  V   + +     +I  E  +  A+   +K   KI A  L  ++ 
Sbjct: 292 ELARNNEEMYLFSPYSVEREYGVPYSYVDITAEYDKMVANPNIVKT--KIRARDLETEIS 349

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV---- 599
            +  E+G+P++   D  N  +P    G +  SNLC+E+        +N + E   +    
Sbjct: 350 KLQQESGYPYVVNIDTANRTNPID--GKIIMSNLCSEVLQVQTPSVINDAQEFVKMGTDI 407

Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIG 657
            CNLGS N++    +  F       +I+   R L  V D +    +   K  N      G
Sbjct: 408 SCNLGSTNVVNMMTSPDF-----GRSIKAMTRALTFVSDTSSIEAVPTIKHGNEQAHTFG 462

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG MG  + L   HI Y SPE++E  +     +++  +  S  +++ER   +  F+ S +
Sbjct: 463 LGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESNHISRERQQTFVGFENSKY 522

Query: 717 DQGVFPIDSI-GLLAEVRDELA-MNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTA 770
             G +    I G      D +  +     +P    W +L+  V T G+ + N +A+AP  
Sbjct: 523 ADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDAVMTDGLYHQNRLAVAPNG 582

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I  VS S+ P  Q +                   E +Q     E  I  + Y    
Sbjct: 583 SISYINDVSASLHPITQRI-------------------EERQ-----EKKIGKIYYPAAG 618

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG------ 882
           + + + IP      + +A+++D   +I+  +   + +DQ  SL L+L  D P G      
Sbjct: 619 L-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFLRSDIPQGLYEWKT 672

Query: 883 ------KKLDFIYRQAWLMGLKTTYYLRS 905
                 + L  +   A+   +K+ YY+R+
Sbjct: 673 QSKQTTRDLSILRHYAFNKDIKSIYYIRT 701


>gi|312865007|ref|ZP_07725235.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099118|gb|EFQ57334.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 725

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 270/606 (44%), Gaps = 94/606 (15%)

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + 
Sbjct: 150 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRGINSALQLSRIGGGVGVNL 209

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G+ I        GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL 
Sbjct: 210 SNLRASGSPIKRIAHAFSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILAFLS 269

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIA 521
            +K   D++ R   ++    +PD + + +  N    LF+P  V      YG+ F   +I 
Sbjct: 270 TKKENTDEKIRVKTLSLGLVVPDKYYELLKTNQPMYLFNPYHV---ERAYGRPFSYVDIT 326

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y++      I+    I+A  L +++  +  E+G+P+I   D  N  +P +  G +  
Sbjct: 327 AE-YDKLVANPAIEKM-VINARELEQEISRLQQESGYPYILNIDSANRSNPVK--GRIIM 382

Query: 582 SNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI       TLN       V     CNLGS+N++    +  F       +I  AV
Sbjct: 383 SNLCSEILQPQEPSTLNRDLTYQEVGTDISCNLGSMNMVNLLRSPDF-----GKSIEYAV 437

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D  +   +    K N  +  IGLG MG  +AL L  + Y S EA+E  D    
Sbjct: 438 RALTTVTDSESIEEVPTVAKGNALYHTIGLGAMGLHTALALNGLNYDSKEALEFVDAFFL 497

Query: 689 FISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN-------- 739
            ++++++ AS ++A E+   +  F+ S +  G +  D       ++D+   +        
Sbjct: 498 AMNYYSLKASHQIALEKKQVFHDFEASKYADGSY-FDQY-----LQDDFHFDFPQVAKSF 551

Query: 740 RTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            T  LP    W  LK+ V   G+ + N +A+AP  +I+ I   S S+ P  Q +      
Sbjct: 552 ETIHLPSLEDWQALKEAVMADGLYHRNRLAVAPNGSISYINETSASLHPITQLI------ 605

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                        E +Q     E  +  + Y    + N      D    + TA+++D   
Sbjct: 606 -------------ENRQ-----EKKVGSIFYPAPYLSN------DTISHYKTAYDMDQRK 641

Query: 856 LIESASRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKT 899
           +I+  ++ QK +DQ  SL L++              D P  + + L+ +   AW  G+K+
Sbjct: 642 IIDIYAQAQKHVDQGLSLTLFMRSKLPQGLYEWKKPDHPNLTTRDLNKLRNYAWTKGIKS 701

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 702 LYYVRT 707


>gi|294338105|emb|CBJ93943.1| Probable phage ribonucleotide-diphosphate reductase alpha subunit
           [Campylobacter phage CP220]
          Length = 898

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 171/654 (26%), Positives = 291/654 (44%), Gaps = 65/654 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+ ++G    F+++++   +  AC  L DV    ++ +    ++DG    D++ +LI 
Sbjct: 6   IHIVKNNGEREIFDAEKIHKHLHFACQNL-DVDIISIIKDARLKIFDGAKSVDIQDSLIK 64

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S++  I E  P+Y  V  R L +KLR+EV    YK+             P  F   ++E 
Sbjct: 65  SAQEKISEDSPDYELVAGRLLNQKLRKEV----YKQ-----------YTPLDFKSQVKER 109

Query: 264 VKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +K     E +    D +L Y  + + YE D    Y  L  +Y +Y +  N   IE+PQ  
Sbjct: 110 IKKGFYTEDLNAYSDEELDYFGSLINYELDNELPYSALNQMYSKYLIKHNKKCIEVPQEV 169

Query: 321 FMRVAMGLALK-ETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           F+ + M +    + E  K+ V+  Y LLS       TP +  + T + +  SC L    D
Sbjct: 170 FILIPMAIFYNTDIEYRKKYVKLGYELLSQRKISLPTPIMNGARTSYKKFISCNLLNFGD 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ-----GVIPFLKVAND 433
            +      L+          GLG + + +RGLGA +    GK       G++P +K    
Sbjct: 230 SVESFARGLEAVLKCTSAKSGLGINTSFIRGLGAPV----GKPSRLDHTGMLPIVKAIES 285

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A+ Q G R GA    +  +H ++E F  L  + G    R    +    I   F+++ 
Sbjct: 286 ATSALVQHG-RGGASNLSMPFFHYEIELFSQLGDSKGSLENRARHTDQTIIINKWFLEKA 344

Query: 494 TQNAGWTLFSPDEVS------DLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVAL 545
                  LF  + V       DL+D  G  K F+  Y++Y  +      K  +KI++  L
Sbjct: 345 LNKEDIFLFHMNAVGNKDPKLDLYDALGDYKRFDELYKHYSAKVPN---KSKKKINSYDL 401

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EET 597
              ++     TG  +I F D     S ++++   + +NLC EI++ S S         E 
Sbjct: 402 LSLIINERMITGRVYIVFADNFVNSSFKENL---YMTNLCCEISVPSHSLDNYRGIPGEL 458

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             C LG+IN   H  + + D  K+A  +   VR LDN+IDI+   + + + S    R +G
Sbjct: 459 GTCILGNINF-GH--SKESDIPKVADFL---VRFLDNMIDISDFAMPEIEYSATKRRTLG 512

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+      L    + Y + EA E  ++ ME   F+ +  S++LA+ERGA   +  S + 
Sbjct: 513 IGVSNLFGYLAKSKLFYNTKEAREHINDLMELFYFNLVKTSIDLAKERGACELYNESFYS 572

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
              F  +   L A ++ E      ++L W+ L++ +   GMR+S+  A+ P   
Sbjct: 573 DNKFIFERY-LEAGIKPEFK----TKLDWESLREELSKYGMRHSSLSAVPPAGN 621


>gi|315648443|ref|ZP_07901542.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
 gi|315276137|gb|EFU39483.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
          Length = 884

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 208/434 (47%), Gaps = 35/434 (8%)

Query: 368 LSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D  G I   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +  + 
Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG-EIKVFRKISAVAL 545
           + FMK V ++  W L  PD     +D      E+   + E+  + G  +  ++ + A  +
Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYD------ELWDGDLEKWKNAGHSVIPYKTVRAREV 312

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++
Sbjct: 313 WHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAM 368

Query: 606 NLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           NL   +  AN+   +++LA+T R +VR LDNVID   +  E+ + +    R +GLG MG 
Sbjct: 369 NLSKFYDEANHDVAWEELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGL 428

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  F  
Sbjct: 429 AELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGF-- 486

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             +  +AEV  E+A               V+  G RN   +  APT +   + G S  I+
Sbjct: 487 --MKNMAEVYPEVA-------------DAVREKGARNVTVITQAPTGSTGTMVGTSTGIE 531

Query: 784 PSYQNLYVKSNMSG 797
           P +   Y + +  G
Sbjct: 532 PYFAFKYFRQSRLG 545


>gi|167838948|ref|ZP_02465725.1| ribonucleotide reductase system [Burkholderia thailandensis MSMB43]
          Length = 843

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 161/608 (26%), Positives = 274/608 (45%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGIAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+D LA   RT VR LD+V+D+    + + ++     R 
Sbjct: 312 LNLTRFVIDPFAQLDGGASAFDWDALAERTRTQVRFLDDVLDVTLWPLLEQRREAEQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G   AL +L + Y + E  + A      +   A  ASVELA+ERGA++ F  S 
Sbjct: 372 IGIGFTGLGDALVMLGLRYDTQEGRDFAARVGREMRDAAYRASVELARERGAFALFDASR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLP-DDIQEAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E             G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +PD       +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 519 DVDALPD----CFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|113868364|ref|YP_726853.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
 gi|113527140|emb|CAJ93485.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
          Length = 827

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 173/647 (26%), Positives = 286/647 (44%), Gaps = 86/647 (13%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           AND       A + +  ++L ++Y      S  ++ Q    RVA  LA  E E ++ A  
Sbjct: 3   ANDQIIRGALAPQEISTEVLIEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWS 58

Query: 342 FYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAM 392
              L +  + F+ +      +GT     L +CF+  V D +         I+ A+ + A 
Sbjct: 59  ARFLWAQENGFVPAGRINSAAGTGIQATLINCFVQPVGDSVSEPREGRPSIYTAVAQAAE 118

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
             +  GG+G D++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L
Sbjct: 119 TMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVL 178

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+E F+   K+ GD      + N +  + D FM+ V  +         EV  +H+
Sbjct: 179 RCDHPDIESFIHA-KDKGD----LSNFNISIGVTDAFMQAVQADG--------EVELVHE 225

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                  IA   Y R  D G+  V+R++ A  LW +++   ++   P I F    N  + 
Sbjct: 226 AEPGADMIAAGAYRR--DDGQW-VYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNN 282

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRT 627
             +   + ++N C E  L S       C LGSINL            +FD+D  A  +R 
Sbjct: 283 LYYCERIEATNPCAEQPLPS----YGCCCLGSINLTRFVRQPFSPQAEFDFDAFAEVVRV 338

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A R+LDNV+D+    + + +   H  R +GLG +G  SAL +L + Y +  A ++A    
Sbjct: 339 ATRMLDNVLDVTFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARIS 398

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E +   A  AS ELA E+GA+  F  + + Q  F                     RLP +
Sbjct: 399 ERMRDDAYLASTELAVEKGAFPLFDANAYLQSGF-------------------AGRLP-E 438

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            L+  +   G+RNS+ ++IAPT TI  A     S  I+P++   Y +     D       
Sbjct: 439 RLRDAIARNGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMPD------- 491

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASR 862
             N  +  ++ D A    L  H G+  ++ ++PD       TA +   +D M ++E+   
Sbjct: 492 --NSYRSFEVADHAW--RLYRHMGA--DMAQLPDAF----VTALQMSALDHMRMLEAV-- 539

Query: 863 RQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            Q +ID   ++++N+  D P  +    +Y +AW  GLK     R  S
Sbjct: 540 -QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNS 584


>gi|186472165|ref|YP_001859507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
 gi|184194497|gb|ACC72461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
          Length = 851

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 160/602 (26%), Positives = 264/602 (43%), Gaps = 80/602 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           + RVA G+AL E E  + A+E  F   L +                   L +CF+  V D
Sbjct: 46  YRRVARGVALAEPEALRPAIEARFVENLQNGALGAGRIMSAAGAGIQATLINCFVQPVGD 105

Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                    L GI+ AL + A   +  GG+G +++ +R  GA +  T   + G   ++ V
Sbjct: 106 SIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGARVKTTGSSASGPCSYIDV 165

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +   V   G R+GA  A L+  H D+ EF+D + + G    R ++ N +  + D FM
Sbjct: 166 FDASCRTVESAGSRRGAQMAVLDCTHPDLLEFIDAKHSKG----RWNNFNVSVAVTDEFM 221

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +A W L    E +           +   N  RQ D G + V+ +  A  ++ +++
Sbjct: 222 QAVENDAMWQLVHRAEPTP---------ALRAANDVRQRDDG-MWVYSERRAKEIFDRIM 271

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
              ++   P I F    N  +  + V  + ++N C E  L         CNLG +NL   
Sbjct: 272 RSTYDIAEPGIVFISRMNDDNNLRAVESIRATNPCGEQPL----PPYGCCNLGPLNLTRF 327

Query: 610 --------HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                   H     FD+D LA   RT VR LD+V+D+    +E+    +   R IG+G  
Sbjct: 328 VLDPFAQRHGGKPSFDWDALAQRTRTQVRFLDDVLDVTLWPLEQQYDESRAKRRIGVGFT 387

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ-GV 720
           G    L ++ + Y S E  + A    + +   A  ASVELA+ERGA+  F    + Q G 
Sbjct: 388 GLGDTLVMMGLRYNSQEGRDFAVRIAKLMRDEAYRASVELARERGAFPLFNAKQYLQDGT 447

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778
           F                    SRLP D++K+ ++T G+RNS+ ++IAPT T+  A     
Sbjct: 448 F-------------------ASRLP-DDVKEAIRTHGIRNSHLLSIAPTGTVSLAFADNA 487

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++   Y ++ +  + +    F V +   R L+ E             G++  +P
Sbjct: 488 SNGIEPAFSWTYTRTKVMANGS-REQFAVEDHAYR-LYRELG-----------GDVGHLP 534

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           D       +A E+     ++  +  Q +ID   ++++N+  D P     + +Y  AW  G
Sbjct: 535 D----YFVSALEMSARDHLDMMAAVQPYIDTSISKTVNVPADYPF-DAFENLYFDAWKGG 589

Query: 897 LK 898
           LK
Sbjct: 590 LK 591


>gi|323342960|ref|ZP_08083191.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463024|gb|EFY08219.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 704

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 170/671 (25%), Positives = 298/671 (44%), Gaps = 96/671 (14%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI--EMPQAFFMRVAMGLALK 331
           F+ +    D+ Y+  F F  Y+G    Y+ Y L  I+  R+  E  +     +A+  A  
Sbjct: 78  FEQIQAVYDIAYDAKFRFPTYMGAFKFYNDYALKSIDAERVFLERYEDRLSVIALYHADG 137

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390
           + E  K+ +     L +  F  +TPTL N+G +   +  SCFL  V D L  I   +QE 
Sbjct: 138 DFELAKKLI---TSLIAQDFTPATPTLLNTGKKKRGEFVSCFLLEVDDSLNDI-ARVQEF 193

Query: 391 AM-LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           AM L+K  GG+  + T +R  G  I      ++GV+   K+ ++     +Q G+R+GA  
Sbjct: 194 AMQLSKLGGGVSINLTNLRAKGESIKDIPNVAKGVVGVAKLLDNAFRYADQMGQRQGAGA 253

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL  +H D+E+FL  +K   DD  R   ++    +PD  ++   ++    +F P     
Sbjct: 254 VYLNVFHADIEDFLQTKKLNADDDVRVKTLSMGVVMPDKMIELAREDKDMYVFYP----- 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVF-------RKISAVALWRKMLTMLFETGHPWIT 562
            H +Y KE+ I + +   + D    K+        RKI+   L+  +  +  E+G+P+I 
Sbjct: 309 -HTVY-KEYGIPFSDVAIKMDEWYDKLVENPNVRKRKINPRKLFDMIAQLQGESGYPYIM 366

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------SSEETAV---CNLGSINLL 608
           + D  N  +P      +  SNLCTEI   S             +E  +   CNL S ++ 
Sbjct: 367 YADNVNKENPL--ADPIKFSNLCTEILQPSIVSHYGDYHRRDEDEIGLDISCNLASGHMG 424

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               NN      +  T+  A+ ++++V +  N   +    ++N   R++G G+MG    +
Sbjct: 425 NMIKNNS-----IKETVFAAMEIMNSVSEKTNIAHVPAVARANRIMRSVGFGVMGHHGYI 479

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG------- 719
               I Y S E +++ D     I+++++  S+E A+E G  +  F+ S +  G       
Sbjct: 480 AENFIAYGSEEDIDLIDVFFSLINYYSLVHSMEKAKETGEKFYGFERSSYADGSYFNDRG 539

Query: 720 -VFPIDSI--GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            V P   +  GLLA+V  E+  +      W +LK+ V   G+ NSN +A+AP  +IA + 
Sbjct: 540 QVLPKTEVVKGLLADV--EIPTDED----WAQLKEDVMAYGLYNSNRLAVAPNGSIAYVM 593

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P                         +KQ       ++ +  Y +        
Sbjct: 594 SATPSLTP-------------------------IKQ-------VVEERTYGNSKTYFPMP 621

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
             D    ++ +A+++D   +I+  +  QK +DQ  S  L +  + + + L   Y  A   
Sbjct: 622 AADVAGFMYESAYQMDKYKIIDVIATAQKHVDQGISFELCITSDETTRSLQRYYLYAHYQ 681

Query: 896 GLKTTYYLRSR 906
           G+KT YY R++
Sbjct: 682 GIKTLYYTRTQ 692


>gi|149408188|ref|YP_001294622.1| hypothetical protein ORF029 [Pseudomonas phage PA11]
          Length = 563

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 174/639 (27%), Positives = 263/639 (41%), Gaps = 118/639 (18%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G Q+  ++Y     G +       + R+A   A    + +K A +F+++L       STP
Sbjct: 29  GWQLFKEKYLWEARGLKDT-----YERIAKTAAQHTDDPDKWAAKFFDVLWRGWLAASTP 83

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            L N GT      SC    + D + G + A  E AML K   G       +R  G+ I  
Sbjct: 84  VLSNMGTIKGMPVSCSGQYIEDSIDGFYSAYHETAMLTKNGFGTSGYLGDIRPRGSII-S 142

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T GK+ G +P  K        V QG  R+GA   YL   H D  E +D  KN  DD    
Sbjct: 143 TGGKASGTLPIFKHFVQDMRDVAQGTSRRGAWAGYLPIDHGDFYEIVDYLKNFPDDL--- 199

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA--DRGEI 534
                              N GW L                          QA  DR E+
Sbjct: 200 -------------------NIGWNL-------------------------SQAFIDRLEV 215

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GV-VHSSNLCTEITLN 591
                + AV  +++ + +   TG  +    D  N  +PQ +   G+ V +SNLCTEITL 
Sbjct: 216 G---DVDAVQRFQRAMYVKAITGKGYFFKPDTVNAMNPQVYKDRGLEVKASNLCTEITLF 272

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV------IDINCHTIEK 645
           S  + T  C L S+NL       ++D  K    +  +   LD V      +       EK
Sbjct: 273 SDEDHTFTCVLSSMNL------EKYDEWKNTDAVFVSTVFLDCVAQEFIRLAKGQKGFEK 326

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           + +     RA+GLG +GF + L    IP  S EA  I  E  + +   A  A+  +A+  
Sbjct: 327 SVRFTEASRALGLGALGFHTYLQAKMIPLESFEAHMINLEIFQHLHEEATRATKWMAKAW 386

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G     KG                                           G+RN++ +A
Sbjct: 387 GEPEWCKG------------------------------------------YGVRNTHLLA 404

Query: 766 IAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAP  + A ICG VSQ I+P   NLY +   +G+   VN   +N  K+R  W + ++ DL
Sbjct: 405 IAPNTSSALICGGVSQGIEPVVANLYNQPTSAGEIYRVNPVFLNLAKKRVGWTDELVKDL 464

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
              +GS+ +++ +    K +  TA+E+D   L+  A+ RQ +I QAQS+NL+ D   S  
Sbjct: 465 IKSEGSVQHLDWLSPKEKAVFKTAYEVDQAALVRLAAARQPYICQAQSINLFFDANESEA 524

Query: 884 KLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDG 921
            +  I+++A L   +K+ YY+R+++     K   +   G
Sbjct: 525 YIAQIHKEALLNPQIKSLYYMRTKAGVQASKGECEACSG 563


>gi|323529940|ref|YP_004232092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
 gi|323386942|gb|ADX59032.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
          Length = 859

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 162/607 (26%), Positives = 268/607 (44%), Gaps = 90/607 (14%)

Query: 321 FMRVAMGLALKETEKEKRAVEF-------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA G+A  E    + +VE        +  L +   M +  T   +      L +CF+
Sbjct: 51  FRRVARGVAEAEPAALRESVEALFVDNLRHGALGAGRIMSAAGTGIAA-----TLINCFV 105

Query: 374 TTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D         L GI+ AL + A   +  GG+G +++ +R  GA +  T+  + G  
Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVRTTSSSASGPC 165

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++  W L    E S      G           RQ + G + V+ +  A  +
Sbjct: 222 TDEFMRAVEEDEPWQLVHRAEPSPALRAAGDV---------RQREDG-MWVYSERPAREI 271

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 272 WERIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPL 327

Query: 606 NL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL    L  FA  +     FD+D LA   RT VR LDNV+D+    + +    +   R I
Sbjct: 328 NLTRFVLDPFAQMKGGKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F  + +
Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAARY 447

Query: 717 -DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
            + G F                    SRLP D +K+ ++  G+RNS+ ++IAPT T+  A
Sbjct: 448 LETGTF-------------------ASRLPED-IKEAIRRDGIRNSHLLSIAPTGTVSLA 487

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +  +  D     SF V +   R L+ E             G+
Sbjct: 488 FADNASNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GD 534

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
           + R+PD       +A E+     ++  +  Q ++D   ++++N+  D P  +  + +Y  
Sbjct: 535 VNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-EAFESLYLD 589

Query: 892 AWLMGLK 898
           AW  GLK
Sbjct: 590 AWKSGLK 596


>gi|18138465|ref|NP_542569.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32453892|ref|NP_861655.1| ribonucleotide reductase [Halovirus HF1]
 gi|18000406|gb|AAL54989.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32346460|gb|AAO61366.1| ribonucleotide reductase [Halovirus HF1]
          Length = 805

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 169/648 (26%), Positives = 275/648 (42%), Gaps = 130/648 (20%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTP 356
           IL  RYF   + G+ IE     F RVA  +A  E + +    A EF + + +  FM ++P
Sbjct: 40  ILPARYFRKDSEGNIIEGADDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSP 99

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+GT   QLS+CF+    DD+  IF   Q+ A++ +  GG+G  ++ +R  GA I+ 
Sbjct: 100 TLMNAGTDMNQLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINS 159

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T G++ G + F++V ++T   V QGGKR+GA    L   H D+  F+  ++N G+     
Sbjct: 160 TGGEASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGE----F 215

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQA-DR 531
            + N +    D F++ V     +TL+ P    +E   + +L    +   Y++  R A D 
Sbjct: 216 ANFNISVATTDNFIEAVDAQESYTLYDPETDYEEPYTVRELSAHFYSPEYQDNPRDAFDD 275

Query: 532 GEIKVFR----------------------------------------KISAVALWRKMLT 551
           GE  V                                          ++ A  +W  M+ 
Sbjct: 276 GEGAVVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMELPAAFIWDVMID 335

Query: 552 MLFETGHPWI-TFKDPCNIRSPQQHVGVV--------HSSNLCTEITLNSSSEETAVCNL 602
             +  G P +  F++     S +QH   V        +++N C E  L     E   CNL
Sbjct: 336 GAWRNGEPGLFNFEE-----SNRQHSFDVEEYPEFRMNATNPCAEQMLV----EYEACNL 386

Query: 603 GSINL--------------------------------LAHFANNQFDYDKLASTIRTAVR 630
           G INL                                +  +     D+++L  TI    R
Sbjct: 387 GHINLSLMLSEDAPTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEAGTR 446

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNV+  +   I +  +     R IGLG+MGF   L+ + +PY + ++ E+A   M +I
Sbjct: 447 FLDNVVTQSDFPIPEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVMRYI 506

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSRLPWDE 748
                 AS  LA ERGA+     S WD+  +  P +         DE    RT   P D 
Sbjct: 507 DRRGTWASHRLALERGAF-----SYWDKSKYADPTE--------YDEWFAARTGLDPED- 552

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS---NMSGDFTVV--N 803
                    +RN N   IAPT T + I   +   +P+Y     K+   ++ GD  +V  +
Sbjct: 553 ---WAGGFPIRNHNITTIAPTGTTSMIGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFD 609

Query: 804 SFLVNELKQRDLWDEAMISD----LKYHDGSIGNIERIPDDLKKIHAT 847
            + +  L++ DL  +A+  +    ++ ++    N   IPD++ +I  T
Sbjct: 610 DYFLRTLEENDLDVDAVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVT 657


>gi|295699386|ref|YP_003607279.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
 gi|295438599|gb|ADG17768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
          Length = 861

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 158/602 (26%), Positives = 266/602 (44%), Gaps = 80/602 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPD 378
           + RVA G+A  E  + + +VE   + +  H       + ++        L +CF+  V D
Sbjct: 54  YRRVARGVAEAEPPELRASVEEQFVDNMRHGALGAGRIMSAAGSGIAATLINCFVQPVGD 113

Query: 379 D--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                    L GI+ AL + A   +  GG+G +++ +R  GA +H T+  + G   ++ V
Sbjct: 114 SIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSAASGPCSYMDV 173

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  + D FM
Sbjct: 174 FDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGVTDEFM 229

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V     W L    E S      G           RQ + G + V+ +  A A+W +++
Sbjct: 230 RAVENEEPWQLVHRAEPSPALRAAGDV---------RQREDG-LWVYSEHPARAIWDRIM 279

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607
              ++   P I F    N  +  + V  + ++N C E  L +       CNLG +NL   
Sbjct: 280 RSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPA----YGCCNLGPLNLTRF 335

Query: 608 ----LAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                A     Q  FD+D LA   RT VR LD+V+D+    + +    +   R IG+G  
Sbjct: 336 VVDPFAQLQGRQPSFDWDGLARRTRTQVRFLDDVLDVTLWPLPEQYAESRAKRRIGVGFT 395

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720
           G    L ++ + Y S E  + A      +   A  ASVELA+ERGA+  F  + + + G 
Sbjct: 396 GLGDTLVMMGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFELFDAARYLEAGT 455

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778
           F                    SRLP D+LK+ ++  G+RNS+ ++IAPT T+  A     
Sbjct: 456 F-------------------ASRLP-DDLKQAIRRDGIRNSHLLSIAPTGTVSLAFADNA 495

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++   Y +  +  D     SF V +   R L+ E             G++ R+P
Sbjct: 496 SNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-LYRELG-----------GDVTRLP 542

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           D       +A ++     ++  +  Q ++D   ++++N+  D P     + +Y  AW  G
Sbjct: 543 D----YFVSALQMSARDHLDMMAAVQPYVDTSISKTVNVPADYPF-DAFESLYFDAWKSG 597

Query: 897 LK 898
           LK
Sbjct: 598 LK 599


>gi|255656921|ref|ZP_05402330.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-23m63]
 gi|296452238|ref|ZP_06893945.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296877590|ref|ZP_06901621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
 gi|296258925|gb|EFH05813.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296431441|gb|EFH17257.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
          Length = 699

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 149/587 (25%), Positives = 268/587 (45%), Gaps = 75/587 (12%)

Query: 351 FMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N+G  R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + +R 
Sbjct: 144 FQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSKLRA 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +K  
Sbjct: 204 SGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTKKIN 263

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  + Y++  
Sbjct: 264 ADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMN-KWYDKLV 322

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + +G++  SNLC EI 
Sbjct: 323 NDNDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDIGIIKMSNLCCEIF 381

Query: 590 LNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
              +  E               CNLGS+N+      N  D   + ST+ TA+R L  V D
Sbjct: 382 QYQTHSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALSFVAD 436

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I 
Sbjct: 437 STDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIK 496

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---------- 745
           AS+++A E+   +  F  S + +G     +  +L++  ++  + ++ ++           
Sbjct: 497 ASMKIAIEKNQTFEGFDKSEYAKG----RNSKVLSKYYEQSYLPKSEKVKALFEGIYIPT 552

Query: 746 ---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +L   VK  G+ N+  MAIAPT +I+ +   + SI P  + + V++   GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAIAPTQSISYVQNSTSSIMPITEPVEVRT--YGDSTTI 610

Query: 803 NS--FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL N+             ++ Y+                   +A+ +D   +I+  
Sbjct: 611 YPMPFLTND-------------NILYYQ------------------SAYRMDMRKVIDLV 639

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q  +DQ  S  L++ DE + + +   Y  A+  GLK+ YY R++
Sbjct: 640 ATVQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|195941045|ref|ZP_03086427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
          Length = 552

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 211/434 (48%), Gaps = 33/434 (7%)

Query: 291 FAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ +LG    Y  Y L   +G R +E  +   + VA+ LA  +    +R  E   +LS
Sbjct: 97  FRFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRTVMVALTLAQGDEALAERLTE--EILS 154

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 155 G-RFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 214 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-EN 524
           +   D++ R   ++    IPD+  K   +N    LFSP    D+  +YGK F ++A  E 
Sbjct: 274 RENADEKIRIKTLSLGVVIPDITFKLAKENTEMALFSP---YDIERIYGKAFGDVAISEL 330

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+    I+A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNL
Sbjct: 331 YDELVADDRIRK-NTINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNL 387

Query: 585 CTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI  +NS+S                CNLGS+N +AH      D      T+ TA+R L
Sbjct: 388 CSEILQVNSASSYDENLDYADVGNDISCNLGSLN-IAH----TMDSPDFGRTVETAIRGL 442

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D++   ++   +  N    AIGLG M     L    I Y SPE ++  +     I+
Sbjct: 443 TAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTIT 502

Query: 692 FHAISASVELAQER 705
           +HA+  S+ LA+ER
Sbjct: 503 WHALHTSMRLARER 516


>gi|121592862|ref|YP_984758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
 gi|120604942|gb|ABM40682.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
          Length = 811

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 168/635 (26%), Positives = 279/635 (43%), Gaps = 85/635 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF     S +E     F RVA  LA  E E  ++A+E  F + L +     
Sbjct: 17  ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDMRQALEARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
               +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D+
Sbjct: 73  GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L        +H       E+  + 
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWEL--------VHGA-APGAELQAQG 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             ++AD G+  V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 AHQRAD-GQW-VYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636
           C E  L         C+LG I +L  F  N         FD+D     + T VR LDNV+
Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  
Sbjct: 352 DVTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYR 411

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+E+GA+  F            D+ G LA+          SRLP D ++K ++  
Sbjct: 412 ASVELAKEKGAFPKF------------DADGYLAK------GTFASRLPAD-IQKAIRKH 452

Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + ++V +   R 
Sbjct: 453 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYAWR- 510

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
                       +    G++  +P         A   D + ++E+    Q ++D A  ++
Sbjct: 511 -----------LYKTLGGDVNHLPAYFVSAMDMA-AADHVAMMEAV---QPYVDTAISKT 555

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +N+  D P       +Y QAW  GLK     R  S
Sbjct: 556 VNVPEDYPY-DDFKGLYMQAWHSGLKGLATYRPNS 589


>gi|94311068|ref|YP_584278.1| ribonucleotide reductase large subunit [Cupriavidus metallidurans
           CH34]
 gi|93354920|gb|ABF09009.1| ribonucleotide reductase, coenzyme B12-dependent [Cupriavidus
           metallidurans CH34]
          Length = 832

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 152/550 (27%), Positives = 250/550 (45%), Gaps = 80/550 (14%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +         I+ A+ + A   +  GG+G D++ +R  GA +  T+ +
Sbjct: 87  LINCFVQPVGDSVSQVRGGKPSIYTAVAQAAETMRRGGGVGYDFSSIRPGGALVRATHSR 146

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F+KV + +   V   G R+GA    L   H D+E F+  +     DR    + N
Sbjct: 147 ASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-----DRGDLTNFN 201

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +         E+  +H+       IA   Y R  D G+  V+R++
Sbjct: 202 ISIGVTDEFMQAVAADG--------EIELIHEAEPGADGIAAGAYRR--DDGQW-VYRRV 250

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW +++   ++   P I F    N  +   +   + ++N C E  L S       C
Sbjct: 251 PARRLWDQVMQATYDHAEPGILFLSRINADNNLYYCETIEATNPCAEQPLPS----YGCC 306

Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGSINL       F +   FD++  A  +R + R+LDNV+DI    + + +      R 
Sbjct: 307 CLGSINLTRFVRRPFTDQASFDFEAFAEVVRVSTRMLDNVLDITYWPLPEQQAEAQAKRR 366

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG +G  SAL +L   Y +  A  +A    E +  HA  ASVELA+E+G +  F    
Sbjct: 367 IGLGFLGLGSALVMLGHRYDTDAARALAGRISETMRDHAYLASVELAEEKGRFPLFDADA 426

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
           +  G F                    SRLP + ++  ++  G+RNS+ ++IAPT TI  A
Sbjct: 427 YLSGGF-------------------VSRLP-EPIRDAIREHGLRNSHLLSIAPTGTITLA 466

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +     D +   +F V +   R          L  H G  G+
Sbjct: 467 FADNASNGIEPAFSWTYNRRKRMPDDS-YRTFEVADHAWR----------LYRHMG--GD 513

Query: 834 IERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFI 888
           +E++P+       TA +   ID M ++E+    Q +ID   ++++N+  D P  +    +
Sbjct: 514 VEQLPESF----VTALQMSAIDHMRMLEAV---QPYIDTSISKTVNVPEDYPY-EAFRNL 565

Query: 889 YRQAWLMGLK 898
           Y +AW  GLK
Sbjct: 566 YLEAWKAGLK 575


>gi|194172963|ref|YP_002003607.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
 gi|114796001|gb|ABI79175.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
          Length = 771

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 199/839 (23%), Positives = 348/839 (41%), Gaps = 104/839 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  +G  ++F+ +RL         G  + S   +  + YK +YDG +  ++  A+I S
Sbjct: 4   KVIKSNGCEVAFDPERLNKAAIFGDDGNGNWSH--IALDAYKRLYDGCTTKEVNQAIIDS 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   K+  ++++  R L+ ++ +E      K P            P ++   +E+G  
Sbjct: 62  CVS--RKDEEHSRMAGRVLIGQIYKEAFGGFTKIPS----------LPSFYNTMVEKGYW 109

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
             + +      +L  L   + + +D  + Y  L+   D+Y +   +  +  E PQ  FM 
Sbjct: 110 EDMGYSFT---ELNTLDAVIDHSKDLGYGYAVLKQFRDKYGIKDTLKDTLFESPQMMFMG 166

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +AM + +K   KE+R    V+ Y  LS       TP L    T     +SC +    D  
Sbjct: 167 IAMAV-MKNMPKERRINDVVKLYTYLSDLKINAPTPYLNGLRTGKTGYASCCVIKADDTA 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A +    +     G+G  +   R  G  + G   K  G IP+ +   D  V  N+
Sbjct: 226 KSIGVAREVAYTMTVNQAGIGY-YLSSRSAGDGVRGNTIKHMGKIPYYR-GIDAGVKENR 283

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R G+           ++E + LR       +R + M+ +  I   F+ RV +N  W 
Sbjct: 284 QQSRGGSATVSFLALDPQIDELIRLRNPMTVASKRINTMDYSIGINRSFINRVAKNLDWM 343

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADR-GEIKVFRK--ISAVALWRKMLTMLFETG 557
           L S      LH+     F ++ E ++ + DR  +     K  I A  L  ++LT   E G
Sbjct: 344 LVSYKHAPQLHE---GIFTMSMEEFDAEVDRIAKDDSIPKTWIRARDLAVELLTQRIEVG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------EETAVCNLG 603
             ++ + D  N  +P + V  ++SSNLC EI L +                 E A+C L 
Sbjct: 401 RLFVYWTDEMNRHTPFKDV--IYSSNLCAEIALPTKGYSDMRNIFKHDVDDGEVALCFLS 458

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S  L+A     + +Y+ +A      V ++DNV++I  +  E  + +    R+IG+GL   
Sbjct: 459 S--LVAGRVTPE-EYEDVA---YYTVLMIDNVMEIMTYPYENMESTVKKRRSIGVGLTNV 512

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +    + Y SPE+ ++  +  E  S+    AS+ LA+ERG       + + +G  PI
Sbjct: 513 AHFIASHKVTYGSPESKQLVHDLAELHSYSLHKASLRLAKERGVCEWMHKTKYPEGWLPI 572

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+     EV D +  + + +  W+ L+K  ++  G+RNS   A  P  + +     +  +
Sbjct: 573 DTYN--KEV-DSVVKDPSLKQDWEGLRKEIIENGGLRNSVLEAYMPNESSSLATNTTNGV 629

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  +++  K +  G       F+V +                             D+LK
Sbjct: 630 YPVREHIIFKKSPQGQVL----FIVPDY----------------------------DELK 657

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK--------KLDFIYRQAWL 894
           + + +A+++D   +I+  +  QK+  QA S +LY+D    K        +L ++ R A  
Sbjct: 658 EYYTSAWDVDTNDMIDMYAVIQKFTGQAISADLYIDYTKLKDGKISMKEQLGYLIR-ATK 716

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            G+KT YYL SR       S  + +  K  A   T  N       I  S   D  CE C
Sbjct: 717 FGMKTWYYLNSRVGAG--DSLAEELHAKKQAEDETRKNYPL----IADSSVEDPYCESC 769


>gi|295690403|ref|YP_003594096.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295432306|gb|ADG11478.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter segnis ATCC 21756]
          Length = 747

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 166/627 (26%), Positives = 263/627 (41%), Gaps = 94/627 (14%)

Query: 321 FMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTV 376
           + RVA  +A  E  + + A   +F + L  F FM +      +GT R   L +CF + T+
Sbjct: 33  WRRVAEAIAQAEPAEAREAWREKFLDALGDFQFMPAGRIFAGAGTGRAVTLFNCFVMGTL 92

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +    
Sbjct: 93  PDDLPGIFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVRGVGADASGPLSFMDVWDSMCR 152

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            +   G+R+GA+   L   H D+E F+D ++    +  R  + N +  + D F++ +  +
Sbjct: 153 TILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----EPTRLRNFNLSVLVTDAFLEALAAD 208

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A W L           ++G E                  VF+ + A  LWR+++T  +  
Sbjct: 209 ADWPL-----------VFGGE------------------VFKTVRASDLWRRLMTATYAY 239

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFA 612
             P + F D  N R+       + +SN C E  L         C LGSINL     A F 
Sbjct: 240 AEPGVIFVDRVNARNNLADCETICASNPCGEQML----PPYGACLLGSINLARLVAAPFT 295

Query: 613 NNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D +KLA     A+R LD+VID++   +E   +     R +GLG+ G   AL    
Sbjct: 296 EGAVLDEEKLAELTHVAIRFLDDVIDVSRFPLEAQAEEARAKRRLGLGVTGLADALIFCG 355

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y S EA +     +  I   A  AS  LA E+G Y      LWD  V  +D   LL  
Sbjct: 356 QRYGSQEAAQTIKRWLGIIKREAYRASAALAAEKGPY-----PLWDPRV--LDRPNLL-- 406

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790
              EL          D+ +  +   G+RN    +IAPT T + + G VS  ++P +   Y
Sbjct: 407 ---ELD---------DDTRALIAKHGLRNGCLTSIAPTGTTSLVAGNVSSGVEPVFAYAY 454

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +     D            +Q  + D A+    + H    G  E   D    +  +A  
Sbjct: 455 SRKVRQPD---------GSTRQEAVEDYALTVWKRLH----GETEPPAD----VFVSAQT 497

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKTTYYLRSRS 907
           + P   +   +  Q  ID   S++  ++ P+    D    +Y + W MG K     R  +
Sbjct: 498 LTPREHLVMQAAAQSMID--SSISKTVNCPADIAFDAFCDVYLEGWRMGCKGLTTYRPNA 555

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            T     ++  VD      P + P ++
Sbjct: 556 VT----GSVLSVDTPPAEPPASTPEAT 578


>gi|326402358|ref|YP_004282439.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
 gi|325049219|dbj|BAJ79557.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
          Length = 761

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 160/607 (26%), Positives = 263/607 (43%), Gaps = 93/607 (15%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + RVA  LA  E E       FY  L  F F+ +   +  +GT R   L +CF +  + D
Sbjct: 48  WRRVARALAETEREPSSWEAPFYEALRDFRFVPAGRIISGAGTARRVTLFNCFVMGDIED 107

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  IF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 108 DLGRIFAHLREAALTMQQGGGIGYDFSSIRPKGAAVRGVGADASGPLSFMDVWDSMCRTI 167

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H D+E F+  ++  G    R  + N +  + D FM+ V  +A 
Sbjct: 168 MSAGARRGAMMATMRCDHPDIEAFIAAKREPG----RLRNFNLSVLVTDDFMRAVEADAA 223

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L                               E KV+R + A ALW  +    ++   
Sbjct: 224 WDLVF-----------------------------EGKVYRTLQARALWEAITRATYDYAE 254

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616
           P + F D  N R+   +   +H++N C E  L         C LGSINL A    + F  
Sbjct: 255 PGVIFIDRINKRNNLYYCETIHATNPCGEQPLPP----YGACLLGSINL-ARLVRDPFGS 309

Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +LA  +  AVR+LD+ ID +   +E  ++     R +GLG+ G   AL +  +
Sbjct: 310 GARIDEAELAELVTIAVRMLDDTIDASGFPLEAQREEAVAKRRVGLGMTGLADALMMCGL 369

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAE 731
            Y +PEA   A +    I   A  AS  LA E+GA+  +  + +  G    ++I GL  +
Sbjct: 370 RYGTPEAAARAGDWARQIERAAYLASAALAAEKGAFPLYDAAQYLAG----ETIAGLDED 425

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
           VR  +A +                 G+RN+   ++APT TI+ +   VS  ++P +   Y
Sbjct: 426 VRAAIAAH-----------------GIRNALLTSVAPTGTISLLSDNVSSGVEPVFALAY 468

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAM-ISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +  +  D            ++ ++ D A+ +   K+ +G+          L     TA 
Sbjct: 469 TRKVLQRD---------GSRREEEVTDYALRLFRAKFGEGA---------PLPAHFVTAQ 510

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLK--TTYYLRS 905
           E+ P   +   +  Q+ +D A S  + + E  G + DF  +Y  A+  G K  TTY   +
Sbjct: 511 ELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE-DFQEVYLDAYRSGCKGCTTYRPNA 569

Query: 906 RSATSVE 912
            + + +E
Sbjct: 570 VTGSVLE 576


>gi|88801651|ref|ZP_01117179.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
 gi|88782309|gb|EAR13486.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
          Length = 592

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 150/595 (25%), Positives = 249/595 (41%), Gaps = 126/595 (21%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  +++ ++  S+P   N G +     SCF + V DD+  I  +  E  M++K  GG 
Sbjct: 82  KFYKYMAAGYYSLSSPVWSNFGKKRGLPISCFGSHVADDMGDILYSQSEVGMMSKLGGGT 141

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA +   NG S G +  +++       V+QG  R+G    YL   H D++
Sbjct: 142 SGYFGKLRKRGADVK-NNGSSSGSVHIMQLFEKMVDVVSQGSVRRGRFSPYLPVDHPDIK 200

Query: 461 EFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EFL++       +  TH +  ++ W+ ++    V + +                      
Sbjct: 201 EFLEIGTEGNPIQELTHGVTVSDQWMEEMIAGDVEKRS---------------------- 238

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQ 574
                                    +W K+L    E G+P+I F+D  N     +   + 
Sbjct: 239 -------------------------IWAKILQRRGEIGYPYILFRDNANNGTVDVYKDKN 273

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           H   +++SNLCTEI L S+ + + VC L SINL+       ++  K    + T    LD 
Sbjct: 274 HE--IYASNLCTEIMLPSNDDWSFVCCLSSINLV------HYEEWKDTDAVETLAYFLDA 325

Query: 635 VID------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           V++                       +EKA      +RA+GLG +G+ S L    + + S
Sbjct: 326 VMEEFITKLEVYKDSSKRDDQFTFRFMEKAYNFAKDNRALGLGALGWHSLLQSKMLAFDS 385

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  E  + I   +  AS E+A   G  +  KG                       
Sbjct: 386 QEAYDLNTEIFKVIKEKSYKASEEMATLYGEPAVLKG----------------------- 422

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795
                               G RN+   AIAPT + A I G VSQ I+P + N+YVK   
Sbjct: 423 -------------------YGRRNTTLNAIAPTTSSAFILGQVSQGIEPIWSNIYVKDIA 463

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
               T+ N  L   L+ +      +   ++ +DGS+ ++  + D  K++  T  EID   
Sbjct: 464 KIKTTIRNPVLEKLLEDKGESTSDVWKSIRDNDGSVQHLAILTDAEKEVFKTYSEIDQKV 523

Query: 856 LIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           ++  A+ RQ  IDQ QS+N+ +  D P  K+++ +Y  AW +G+K+ YY  S +A
Sbjct: 524 IVYQAANRQNHIDQGQSINIMVHPDMPI-KEVNDVYITAWKLGVKSMYYQHSMNA 577


>gi|148259205|ref|YP_001233332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
 gi|146400886|gb|ABQ29413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
          Length = 761

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 158/606 (26%), Positives = 261/606 (43%), Gaps = 91/606 (15%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + RVA  LA  E E       FY  L  F F+ +   +  +GT R   L +CF +  + D
Sbjct: 48  WRRVARALAETEREPSSWEAPFYEALRDFRFVPAGRIISGAGTARRVTLFNCFVMGDIED 107

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  IF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 108 DLGRIFAHLREAALTMQQGGGIGYDFSSIRPKGAAVRGVGADASGPLSFMDVWDSMCRTI 167

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H D+E F+  ++  G    R  + N +  + D FM+ V  +A 
Sbjct: 168 MSAGARRGAMMATMRCDHPDIEAFIAAKREPG----RLRNFNLSVLVTDDFMRAVEADAA 223

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L                               E KV+R + A ALW  +    ++   
Sbjct: 224 WDLVF-----------------------------EGKVYRTLQARALWEAITRATYDYAE 254

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-- 616
           P + F D  N R+   +   +H++N C E  L         C LGSINL A    + F  
Sbjct: 255 PGVIFIDRINKRNNLYYCETIHATNPCGEQPLPP----YGACLLGSINL-ARLVRDPFGS 309

Query: 617 ----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +LA  +  AVR+LD+ ID +   +E  ++     R +GLG+ G   AL +  +
Sbjct: 310 GARIDEAELAELVTIAVRMLDDTIDASGFPLEAQREEAVAKRRVGLGMTGLADALMMCGL 369

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GLLAE 731
            Y +PEA   A +    I   A  AS  LA E+GA+  +  + +  G    ++I GL  +
Sbjct: 370 RYGTPEAAARAGDWARQIERAAYLASAALAAEKGAFPLYDAAQYLAG----ETIAGLDED 425

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
           VR  +A +                 G+RN+   ++APT TI+ +   VS  ++P +   Y
Sbjct: 426 VRAAIAAH-----------------GIRNALLTSVAPTGTISLLSDNVSSGVEPVFALAY 468

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAM-ISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +  +  D            ++ ++ D A+ +   K+ +G+          L     TA 
Sbjct: 469 TRKVLQRD---------GSRREEEVTDYALRLFRAKFGEGA---------PLPAHFVTAQ 510

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTYYLRSR 906
           E+ P   +   +  Q+ +D A S  + + E  G +    +Y  A+  G K  TTY   + 
Sbjct: 511 ELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFEAFQEVYLDAYRSGCKGCTTYRPNAV 570

Query: 907 SATSVE 912
           + + +E
Sbjct: 571 TGSVLE 576


>gi|82492125|gb|ABB77922.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 569

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 154/592 (26%), Positives = 252/592 (42%), Gaps = 122/592 (20%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  FY  +S   +  ++P   N G       SCF + + D+   +     E   + K  G
Sbjct: 62  ADRFYEYMSRGFYSLASPVWSNFGLDRGLPISCFGSYIEDNTESLLYTQAEVGEMTKLGG 121

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  G+ I   NGKS G   F ++ +     ++QGG R+G    Y++  H D
Sbjct: 122 GTSGYFGNLRPRGSSIT-NNGKSNGSYSFTELFDTEISVISQGGTRRGQFAGYIDVEHDD 180

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           ++E+L++ K  GD   +  +M     I D + +        ++   DE            
Sbjct: 181 LDEWLNI-KTEGD---KIQNMYYGVIIGDDWFQ--------SMIDGDE------------ 216

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
                      D+ E            W  ++      G P+I F+D  N   PQ +   
Sbjct: 217 -----------DKRET-----------WANIVETRINIGVPYIIFRDNMNGGKPQVYKDK 254

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              +++SNLCTEI+L ++  E+ VC L S+N L       FD  K    + T  R LD V
Sbjct: 255 NYQINASNLCTEISLPATPTESFVCCLSSMNAL------HFDEWKDTDAVETLTRFLDAV 308

Query: 636 ID-----------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           ++           +    +++A +    HRAIG+G++G+ S L    IP+ S +A+   +
Sbjct: 309 MEEFIQEAQGNEYLGVDLMQRAVRFAERHRAIGIGVLGWHSYLQSKMIPFDSMDAMRENE 368

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +    I   + + S  +A E G     +G                               
Sbjct: 369 KIFSMIEERSYAESERMADEFGEPEVLEG------------------------------- 397

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                       G RN+  M++APT + + I G VS SI+P   N +V+       T  N
Sbjct: 398 -----------YGRRNATTMSVAPTKSSSVILGQVSASIEPLKSNYFVRDGAKLKSTQKN 446

Query: 804 SFLVNELKQR-----DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            FL   LK R     D WD      +  +DGS+ +++ + D  K++  T  EI  M +I 
Sbjct: 447 RFLEAILKDRGEDTRDTWDS-----IGRNDGSVQHLDCLDDHEKEVFKTFSEIPQMAIIN 501

Query: 859 SASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            A++RQ  IDQ+QS+N+ +  DE S K+++ +Y +AW  G+K+ YY  S +A
Sbjct: 502 QAAQRQDHIDQSQSVNISINPDEVSVKEMNQLYIEAWRKGVKSLYYQHSVNA 553


>gi|319942969|ref|ZP_08017252.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319743511|gb|EFV95915.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 829

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 164/632 (25%), Positives = 273/632 (43%), Gaps = 94/632 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MCSTPT 357
           +L ++Y    +G + E     F RVA  LA  E + E R       L + H   + +   
Sbjct: 24  VLAEKYLK--DGEKTEA--ELFARVARALASVE-KPEIRDEWEAKFLGNLHAGAIGAGRI 78

Query: 358 LFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVR 408
           +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D++ +R
Sbjct: 79  MSAAGTDIQATLINCFVQPVGDCIQGYDDQGYPGIYEALREAAETMRRGGGVGYDFSRIR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT+  + G   ++ V + +   V   G R+GA    L   H DV +F+  ++ 
Sbjct: 139 PNGAEVKGTHSIASGPCSYINVFDQSCATVESAGSRRGAQMGVLRIDHPDVLDFITAKRT 198

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FMK +  NA W L        +H        +A   Y+R 
Sbjct: 199 PG----RWNNFNVSVGVTDAFMKALQDNADWEL--------VHRARPGRKVMAAGAYQR- 245

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            D G+  V+R++ A  LW  ++   ++   P I F D     +   +   + ++N C E 
Sbjct: 246 -DDGKW-VYRRVPARQLWDTIMKSTYDFAEPGILFLDAIGRDNNLNYCETIEATNPCGEQ 303

Query: 589 TLNSSSEETAVCNLGSI-------NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
            L         C+LG I       N   H     FD+      +   VR LDNV+D+   
Sbjct: 304 PL----PPYGCCDLGPIILTRFVRNAFGHGGEPTFDFAAFEDVVAIQVRALDNVLDVTFW 359

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            ++K +      R IG+G  G  + L +L + Y   E   +A    E +   A  ASVEL
Sbjct: 360 PLDKQRAEAAAKRRIGVGFTGLGNTLAMLKLRYDRAEGRAMAARIAETMRNAAYRASVEL 419

Query: 702 AQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           A+E+GA+  F       KGS   +G F                    SRLP D++K  ++
Sbjct: 420 AKEKGAFPQFDADRYLGKGSKKGEGSF-------------------ASRLP-DDIKADIR 459

Query: 755 TIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + ++V +   
Sbjct: 460 KYGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-RSEYVVEDHAW 518

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870
           R    +             G+++ +PD      A   + + + ++E+    Q ++D   +
Sbjct: 519 RLFKSQG------------GDVDNLPDYFVNALAMTAQ-EHVAMMEAV---QPYVDTSIS 562

Query: 871 QSLNLYLDEPSGKKLDFIYRQAW---LMGLKT 899
           +++N+  D P     D +Y+QAW   L GL T
Sbjct: 563 KTVNVPADYPYEDFKD-LYQQAWKARLKGLAT 593


>gi|126728437|ref|ZP_01744253.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
 gi|126711402|gb|EBA10452.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
          Length = 762

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 250/590 (42%), Gaps = 85/590 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDL 380
           R+A  LA  E E       FY  L  F ++ +      +GT R   L +CF + T+PD +
Sbjct: 37  RIARALAEVEAEPAVWEDRFYAALEDFKYLPAGRITAGAGTARSVTLFNCFVMGTIPDTM 96

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +  
Sbjct: 97  GGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVTGVAADASGPLSFMDVWDAMCRTIMS 156

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA+ A +   H D+E F+  +     D  R    N +  + D FM+ V  +  W 
Sbjct: 157 AGSRRGAMMATMRCDHPDIEAFIGAKS----DSARLRMFNLSVLVTDTFMEAVKADGPWD 212

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                          Q D     V+  + A  LW +++   ++   P 
Sbjct: 213 L--------------------------QFDG---TVYHTVQARDLWNRIMRATYDYAEPG 243

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +V  + ++N C E  L         C LGS+NL    A       +
Sbjct: 244 VIFIDRINKANNLNYVETIAATNPCGEQPL----PPYGACLLGSVNLARLVAEPFTDAAR 299

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D D L   +  AVR++DNV+D +   + + +      R IGLG+ G   AL ++   Y 
Sbjct: 300 LDEDALDELVTCAVRMMDNVVDASRFPLPQQEAEAQAKRRIGLGVTGLADALLMMGQRYG 359

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA   A+  ++ I+  A  ASV+LA+E+GA+  F            D+   LA   + 
Sbjct: 360 SEEAAVQAEGWLKRIARAAYLASVDLAKEKGAFPLF------------DAEKYLAS-GNM 406

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
           +AM+       ++++  V+  G+RN+   +IAPT TI+   G VS  I+P +   Y +  
Sbjct: 407 MAMD-------EDVRSAVREHGIRNALVTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKV 459

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +  D T     +V+   Q              +    G    +PD        A    P+
Sbjct: 460 LQKDGTRTEEEVVDYAVQ-------------MYRAVHGEDAELPDYFVNAQTLA----PL 502

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
             +   +  QKW+D + S  +   E  S +    +Y  A+  G K  TTY
Sbjct: 503 EHVRMQAAAQKWVDSSISKTINCPEDISFEDFKEVYMAAYETGCKGCTTY 552


>gi|222109642|ref|YP_002551906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
 gi|221729086|gb|ACM31906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
          Length = 813

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 171/637 (26%), Positives = 284/637 (44%), Gaps = 89/637 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF     S +E     F RVA  LA  E E  ++A+E  F + L +   + 
Sbjct: 17  ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDMRQALEARFLDNLRA-GAIG 71

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
           +   +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D+
Sbjct: 72  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L        +H       E+  + 
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWEL--------VHGA-APGAELQAQG 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             ++AD G+  V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 AHQRAD-GQW-VYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636
           C E  L         C+LG I +L  F  N         FD+D     + T VR LDNV+
Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  
Sbjct: 352 DVTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRREGRDMAVQIAERMRNAAYR 411

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+E+GA+  F            D+ G LA+          SRLP D ++K ++  
Sbjct: 412 ASVELAKEKGAFPKF------------DADGYLAK------GTFASRLPAD-IQKAIRKH 452

Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + ++V +   R 
Sbjct: 453 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWSYTRRKREADGS-KSEYVVEDYAWR- 510

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
                +   L       G++  +P         A   D + ++E+    Q ++D A  ++
Sbjct: 511 -----LYKTLG------GDVNHLPAYFVSAMDMA-AADHVAMMEAV---QPFVDTAISKT 555

Query: 873 LNLYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRS 907
           +N+  D P     DF  +Y QAW  GLK     R  S
Sbjct: 556 VNVPEDYPYA---DFKGLYMQAWHSGLKGLATYRPNS 589


>gi|332527721|ref|ZP_08403762.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
 gi|332112119|gb|EGJ12095.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
          Length = 827

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 160/606 (26%), Positives = 273/606 (45%), Gaps = 82/606 (13%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLS-SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD-- 378
           RVA  LA  E E  + A E   L +    F+ +   +  +GT     L +CF+  V D  
Sbjct: 40  RVARALAAIEAEDARSAREAEFLWAMQRGFVPAGRIMSAAGTDIQATLINCFVQPVGDSI 99

Query: 379 -----DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
                D  GI+ A+ E A   +  GG+G D++ +R  GA +  T+ ++ G + F++V + 
Sbjct: 100 TGYEGDKPGIYTAVTEAAETMRRGGGVGYDFSRIRPQGALVTQTHSRASGPVSFMRVFDA 159

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V   G R+GA    L   H D+E F+  +     D+    + N +  + D  ++ V
Sbjct: 160 SCETVESAGARRGAQMGVLRCDHPDIEAFIHAK-----DKGELRNFNISVGVTDALVQAV 214

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +A + L        +H     E  +A    +R+  +    V+R + A  LW +++   
Sbjct: 215 IDDAEFEL--------VHAARPHEELVAAGARQREDGK---WVYRSVKARDLWDQIMRST 263

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--- 610
           ++   P + F D  N  +   +   + ++N C E  L     +   C LGS++L  H   
Sbjct: 264 YDHAEPGVLFIDQMNRENNLHYCETIEATNPCAEEPL----PDYGCCCLGSVDLTRHVVG 319

Query: 611 -FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            F+++  FD++  A+ +R  VR+LDNV+D     +E+ +      R +GLG +G  S+L 
Sbjct: 320 AFSDDAHFDFEGFAAVVRVGVRMLDNVLDATYWPLEQQRAEAAAKRRVGLGFLGLGSSLV 379

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L I Y S E   +A +  E +   +  ASV+LA ERGA+   + + + +  F       
Sbjct: 380 MLGIRYDSDEGRALAAKIAETMRDASYLASVDLAVERGAFPKLEKTKYLKSGF------- 432

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786
                         RLP + ++K ++  G+RNS+ +AIAPT TI  A     S  I+P +
Sbjct: 433 ------------AKRLP-ESIRKAIRKHGIRNSHLLAIAPTGTISLAFADNASNGIEPPF 479

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y +     D     S  + E+  R  W       L  H G  G++ ++P        
Sbjct: 480 SWTYNRKKREAD----GSHRIFEVADR-AW------RLFRHLG--GDVTKLPPQF----V 522

Query: 847 TAFEI---DPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           TA E+   D M ++E+    Q ++D   ++++N+  D P  +    +Y  AW  GLK   
Sbjct: 523 TALEMSANDHMRMLEAV---QPFLDTSISKTVNVPADYPY-EDFQNLYLDAWKAGLKGLA 578

Query: 902 YLRSRS 907
             R  S
Sbjct: 579 TYRPNS 584


>gi|162448129|ref|YP_001621261.1| ribonucleoside-diphosphate reductase subunit alpha [Acholeplasma
           laidlawii PG-8A]
 gi|161986236|gb|ABX81885.1| ribonucleoside-diphosphate reductase, alpha chain [Acholeplasma
           laidlawii PG-8A]
          Length = 700

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 171/649 (26%), Positives = 297/649 (45%), Gaps = 70/649 (10%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           D+ Y   F F  Y+G    Y+ Y L     +  + + +  R+A+           +A   
Sbjct: 84  DIAYAAKFRFPTYMGAFKFYNDYALKDRTGKNYL-ERYEDRLAVNALYHANGDFDKARNL 142

Query: 343 YNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
             LL S  F  +TPTL N+G ++  +  SCFL    D L  I    + +  L+K  GG+ 
Sbjct: 143 IRLLISQDFTPATPTLLNTGKSKRGEFVSCFLLEAGDSLNDISRISEFSMQLSKVGGGVS 202

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + T +R  G  I G    S+GV+  +K+ ++     +Q G+R GA   YL  +H D+E+
Sbjct: 203 INLTNLRAKGEAIKGIPNVSKGVVGVVKLLDNNFRYADQMGQRTGAGAVYLNVFHADIED 262

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EI 520
           FL  +K   DD  R   ++    IPD FM+    N    LF P  V    + YGK+F +I
Sbjct: 263 FLATKKLNADDDIRAKTLSMGVVIPDKFMELARDNKDMWLFYPHTV---FEQYGKDFADI 319

Query: 521 AYEN---YERQADRGEIKVFRKISAVALWRKMLTMLF----ETGHPWITFKDPCNIRSPQ 573
           + +    Y+  AD   ++  RK++     RK+L M+     E+G+P+I F D  N  +P 
Sbjct: 320 SIDMDHWYDILADNPLVRK-RKVNP----RKILDMIAQLQGESGYPYIMFSDNVNKANPL 374

Query: 574 QHVGVVHSSNLCTEI---TLNSSSEETAVCN--LG---SINLLAHFANNQFDYDKLASTI 625
                V  SNLCTEI   T+ S   +    N  +G   S NL +    N   ++ +  T+
Sbjct: 375 DM--PVKFSNLCTEILQPTITSHYGDYGANNDEIGMDISCNLASGHMGNMMKHNTIKETV 432

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             A+ V+++V +  +   +    K+N  +R++G G+MG    +   +I Y S E +++ D
Sbjct: 433 FGAMDVMNSVSNQTDIKHVPAVAKANRLNRSVGFGIMGHHGYIAENYIMYGSDENIDLID 492

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTS 742
                ++++++  S+E A+E G  +  F+ S +  G +  D  G +    D++  + +  
Sbjct: 493 VFFNIVNYYSLVHSMEKAKETGEKFHRFEKSKYADGSY-FDGRGQILPKTDKVKELFKNV 551

Query: 743 RLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            +P    W +LK+ V T G+ NS+ +A+AP  +I  +   + S+ P              
Sbjct: 552 YIPTDDDWLQLKEDVMTHGLYNSHRLAVAPNGSIGYVMSATPSLTP-------------- 597

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                      +KQ       ++ +  Y +          +    ++ TA+ +D   LI+
Sbjct: 598 -----------IKQ-------LVEERTYGNSKTYYPMPAVEKAAFMYETAYRMDTYRLID 639

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  QK +DQ  S  L +  + + ++L   Y  A   G+KT YY R++
Sbjct: 640 VIATAQKHVDQGISFELCITSDITTRELQKYYLYAHYQGIKTLYYTRTQ 688


>gi|89900981|ref|YP_523452.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89345718|gb|ABD69921.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 969

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 226/494 (45%), Gaps = 58/494 (11%)

Query: 323 RVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA  LA  E  ++++  E  F   L +  F+ +      +GT     L +CF+  V D 
Sbjct: 43  RVAHALAQVEAPEQQKQWETKFLQALQN-GFLPAGRIQSAAGTDLAATLINCFVQPVGDS 101

Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +        GI+ AL E A   +  GG+G D++ +R  GA +  T   + G + +++V +
Sbjct: 102 IAHVEDGHPGIYTALTEAAETMRRGGGVGYDFSRIRPRGAWVGSTQSSASGPVSYMRVFD 161

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H D+EEF+   K+TGD +    + N +  I D FM+ 
Sbjct: 162 RSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDTGDLK----NFNISVGITDTFMQA 216

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++A + L    E        G              D G I V+R + A  LW +++  
Sbjct: 217 VQKDAAFALVHRAEPGPAQKEAGAH---------HVTDSG-IWVYRTLQARELWDQIMRS 266

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P + F D  N  +   +   + S+N C E  L         C LGSI+L   F 
Sbjct: 267 TYDHAEPGVLFLDHINRDNNLSYCETIASTNPCAEQPL----PPYGCCCLGSIDL-TRFI 321

Query: 613 NNQFD----YDKLA--STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
              F+    +DK A     R A R+LDNV+D+    + + ++   + R IGLG  G   A
Sbjct: 322 KQPFEKAASFDKAAFVEVARVATRMLDNVLDVTVWPLPQQQEEARSKRRIGLGYTGLGDA 381

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L +L++ Y +  A ++A +  E +   A  ASV+LAQERGA+  F   L+  G       
Sbjct: 382 LVMLNLRYDTQAARDMARDISELMRDTAYDASVDLAQERGAFPLFNADLYLTG------- 434

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDP 784
                          SRLP   LK+RV+T G+RNS+ ++IAPT TI  A     S  I+P
Sbjct: 435 -----------QRFASRLP-PALKERVRTHGLRNSHLLSIAPTGTISLAFADNASNGIEP 482

Query: 785 SYQNLYVKSNMSGD 798
           ++   Y +     D
Sbjct: 483 AFSWSYTRKKRMAD 496


>gi|194290033|ref|YP_002005940.1| ribonucleotide reductase subunit alpha [Cupriavidus taiwanensis LMG
           19424]
 gi|193223868|emb|CAQ69877.1| Putative ribonucleotide reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 828

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 169/647 (26%), Positives = 285/647 (44%), Gaps = 86/647 (13%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           AND       A + +  ++L ++Y      S  ++ Q    RVA  LA  E E ++ A  
Sbjct: 3   ANDQIIRGALAPQEISTEVLLEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWS 58

Query: 342 FYNLLSSFH-FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAM 392
              L +  + F+ +      +GT     L +CF+  V D +         I+ A+ + A 
Sbjct: 59  ARFLWAQENGFVPAGRINSAAGTGIQATLINCFVQPVGDSVSEPRDGRPSIYTAVAQAAE 118

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
             +  GG+G D++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L
Sbjct: 119 TMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVL 178

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+E F+  +     D+    + N +  + D FM+ V  +A        EV  +H+
Sbjct: 179 RCDHPDIESFIHAK-----DKGELSNFNISIGVTDDFMQAVQADA--------EVELVHE 225

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                  IA   Y R  D G+  V+R++ A  LW +++   ++   P I F    N  + 
Sbjct: 226 AEPGADMIAAGAYRR--DDGQW-VYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNN 282

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRT 627
             +   + ++N C E  L S       C LGSINL             FD+D  A  +R 
Sbjct: 283 LYYCERIEATNPCAEQPLPS----YGCCCLGSINLTRFVRQPFTPQAAFDFDAFAEVVRV 338

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A R+LDNV+D+    + + +   H  R +GLG +G  SAL +L + Y +  A ++A    
Sbjct: 339 ATRMLDNVLDVTFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARIS 398

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E +   A  AS ELA ++GA+  F    + +  F                    SRLP  
Sbjct: 399 ERMRDEAYLASTELATQKGAFPLFDAEAYLRSGF-------------------ASRLP-Q 438

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            +++ +   G+RNS+ ++IAPT TI  A     S  I+P++   Y +     D       
Sbjct: 439 TVREAIGRHGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKRMPD------- 491

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASR 862
             N  +  ++ D A    L  H G+  ++ ++P+       TA +   +D M ++E+   
Sbjct: 492 --NSYRSFEVADHAW--RLYRHMGA--DMAQLPEAF----VTALQMSALDHMRMLEAV-- 539

Query: 863 RQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            Q +ID   ++++N+  D P  +    +Y +AW  GLK     R  S
Sbjct: 540 -QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNS 584


>gi|73541801|ref|YP_296321.1| ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
 gi|72119214|gb|AAZ61477.1| Ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
          Length = 828

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 174/674 (25%), Positives = 296/674 (43%), Gaps = 91/674 (13%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--- 338
           AND       A + +  ++L ++Y      S  ++ +    RVA  LA  ETE ++    
Sbjct: 3   ANDQILRGALAPQEISTEVLLEKYAKGEEQSVTDVRK----RVARALAQAETEDQREGWT 58

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENA 391
           A   +   S F       +   +G +   L +CF+  V D +         I+ A+ + A
Sbjct: 59  ARFLWAQESGFVPAGRINSAAGTGIQA-TLINCFVQPVGDSVSEPRGGRPSIYTAVAQAA 117

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
              +  GG+G D++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    
Sbjct: 118 ETMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGV 177

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+E F+   K+ GD      + N +  + D FM+ V ++        +EV  +H
Sbjct: 178 LRCDHPDIESFIHA-KDKGD----LSNFNISIGVTDEFMRAVERD--------EEVELVH 224

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +       IA   Y R  D G+  V+R++ A  LW +++   ++   P I F    N  +
Sbjct: 225 EAEPGADLIAGGAYRR--DDGQW-VYRRMPARLLWDQVMHATYDHAEPGILFLSRINADN 281

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIR 626
              +   + ++N C E  L         C LGSI+L          ++ FD+D  A  +R
Sbjct: 282 NLYYCETIEATNPCAEQPL----PPYGCCCLGSIDLTRFVRQPFTPDSDFDFDAFAEVVR 337

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            + R+LDNV+D+    + + +      R +GLG +G  SAL +L + Y S  A  +A   
Sbjct: 338 VSTRMLDNVLDVTFWPLPEQQAEAQAKRRVGLGFLGLGSALVMLGLRYDSEPARVVAARI 397

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E +   A  AS ELA E+GA+  F    + Q  F                    SRLP 
Sbjct: 398 AERMRDEAYLASTELAAEKGAFPLFDADAYLQSGF-------------------ASRLP- 437

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
           + +++ +   G+RNS+ ++IAPT TI  A     S  I+P++   Y +     D      
Sbjct: 438 EPVRQAIMRNGLRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYQRKKRMPD------ 491

Query: 805 FLVNELKQRDLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESA 860
              N  +  ++ D A     +Y H G+  ++ ++PD       TA +   +D M ++++ 
Sbjct: 492 ---NTYRTYEVADHAW---RRYRHTGA--DMNKLPDAF----VTALQMSALDHMRMLQAV 539

Query: 861 SRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLK 917
              Q +ID   ++++N+  D P  +    +Y +AW  GLK     R  S   +V   ++ 
Sbjct: 540 ---QPYIDTSISKTVNVPEDYPY-EAFRNLYLEAWKAGLKGLATYRPNSVLGAVLSVSVP 595

Query: 918 GVDGKLNAVPVTDP 931
            V     A  V DP
Sbjct: 596 AVAASSTATTVDDP 609


>gi|322384851|ref|ZP_08058512.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150320|gb|EFX43822.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 891

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 33/433 (7%)

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 164 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 223

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +  I 
Sbjct: 224 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 279

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD  +D    Y ++++   + +  +A   E+K +R + A  +W
Sbjct: 280 NSFMKAVKEDLDWELVFPD-TTDPE--YNEKWDGNLDAW--KALGKEVKHYRTVRARDVW 334

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL ++N
Sbjct: 335 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 390

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G MG  
Sbjct: 391 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 450

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  F  +
Sbjct: 451 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 510

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +    EV + ++ N                 GMRN   +  APT +   + G S  I+P
Sbjct: 511 MVAEFPEVGESISQN-----------------GMRNVTVITQAPTGSTGTMVGTSTGIEP 553

Query: 785 SYQNLYVKSNMSG 797
            +   Y + +  G
Sbjct: 554 YFAFEYFRQSRLG 566


>gi|167578702|ref|ZP_02371576.1| ribonucleotide reductase system [Burkholderia thailandensis TXDOH]
          Length = 843

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 159/608 (26%), Positives = 270/608 (44%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G   AL +L + Y + E  + A      +   A  ASVELA ERGA+  F  S 
Sbjct: 372 IGIGFTGLGDALVMLGLRYDAQEGRDFAARVARVMRDAAYRASVELACERGAFPLFDASR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLP-DDIQEAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E             G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +P        +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|167463293|ref|ZP_02328382.1| Ribonucleotide reductase alpha subunit [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 868

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 33/433 (7%)

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 141 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 200

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +  I 
Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 256

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD  +D    Y ++++   + +  +A   E+K +R + A  +W
Sbjct: 257 NSFMKAVKEDLDWELVFPD-TTDPE--YNEKWDGNLDAW--KALGKEVKHYRTVRARDVW 311

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL ++N
Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 367

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G MG  
Sbjct: 368 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 427

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  F  +
Sbjct: 428 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 487

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +    EV + ++ N                 GMRN   +  APT +   + G S  I+P
Sbjct: 488 MVAEFPEVGESISQN-----------------GMRNVTVITQAPTGSTGTMVGTSTGIEP 530

Query: 785 SYQNLYVKSNMSG 797
            +   Y + +  G
Sbjct: 531 YFAFEYFRQSRLG 543


>gi|30348566|emb|CAC84358.1| RRlarge [Saimiriine herpesvirus 2]
          Length = 767

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 175/665 (26%), Positives = 280/665 (42%), Gaps = 96/665 (14%)

Query: 301 LYDRYFL----HINGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341
            YD Y L      NG    +P  FF R+A        M  +LK+T    +K    VE   
Sbjct: 97  FYDTYVLPPKTENNGKYESIPH-FFARIAAYCAWNCIMCESLKDTLVYIQKRDWNVEIKT 155

Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389
                  FY ++SS    C+TP + ++G     LSSCF     L T    +  IFG L  
Sbjct: 156 DMHIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGEL-- 213

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A L     G+G D T     G +IH            LK+ N      N    R  +V 
Sbjct: 214 -APLLASRSGVGVDVTKFSFSGKNIHSC----------LKLINAQVEFFNDKSVRPVSVA 262

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSPDEV 507
           AY+E WH  + EFL  +     D  R + +     +P LF K   V  N  W LF P + 
Sbjct: 263 AYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYEVDPNGLWYLFDPKDA 320

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            +L  LYG EFE   E Y R     + K  + ++  +L   ++  + +TG P++  K+  
Sbjct: 321 PNLVKLYGFEFE---EEYLRLVSEKKYK--QSVTLKSLMFSLINTIIKTGSPYVISKEAM 375

Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616
           N     +  G  ++ SNLC EI +    + T+ CNL ++ L          +  +N  QF
Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQF 434

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHI 672
           D+ KL   ++ AV +++  I      +  +  S+ T     R++G+G  G       +  
Sbjct: 435 DFSKLEYAVQAAVFIINACI------LSPSPTSSATVGQRERSMGIGCHGLADVFSEMGY 488

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            Y   E+  +  +  E + + A+  S E+    +   ++ F+ S    GVF   +   + 
Sbjct: 489 GYLDLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMP 548

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +        R     W  L+  +K  G+ NS  +A+ PTA  + + G + S  P + N+ 
Sbjct: 549 Q--------RVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMS 600

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K +   +    N   +  +K +DL        ++++ G +  +        K   TAF+
Sbjct: 601 SKVSNKEEIMKPNITFLKNVKPQDL------CTVRFYGGDVSMMPEEVSTRYKHFLTAFD 654

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-YYLRSR 906
             P   +  AS R  ++DQ+QSL L+L E    S K L  +    + +GLKT  YY R +
Sbjct: 655 YCPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVK 714

Query: 907 SATSV 911
             T +
Sbjct: 715 KTTKL 719


>gi|237651588|ref|YP_002899058.1| putative ribonucleoside-diphosphate redutase [Roseophage DSS3P2]
 gi|220898058|gb|ACL81316.1| putative ribonucleoside-diphosphate redutase [Silicibacter phage
           DSS3phi2]
          Length = 776

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 257/611 (42%), Gaps = 79/611 (12%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENA 391
           E+E     FYN L  F F+ +      +GT R+  L +C+ + T+PD L GIF  L+E A
Sbjct: 57  EREALEARFYNALYDFKFLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAA 116

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +  +  GG+G D++ +R  GA + G    S G + F+ V +     +   G R+GA+ A 
Sbjct: 117 LTMQQGGGIGYDFSTLRPKGALVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMAT 176

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +   H D+ EF+  ++    D  R  + N +    D FM+ V  ++ W L          
Sbjct: 177 MRCDHPDIMEFVTAKQ----DPLRLRNFNVSVLCTDEFMEAVAADSDWDLMF-------- 224

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                + KV++ I A  LW  +L   +    P + F D  N  +
Sbjct: 225 ---------------------DGKVYQTIKAKELWETILWNTYNYAEPGVIFIDRINKEN 263

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ--FDYDKLASTI 625
               +  + ++N C E  L         C LGS+NL  H    F   Q   D   L  ++
Sbjct: 264 NLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVVFPFVKGQAEIDMKALEESV 319

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR+LD+V++ +   +E  +      R  GLG+ G   AL +    Y + +AV   D 
Sbjct: 320 RTGVRILDSVVETSLFPLEAQRDEARFKRRQGLGVTGLADALFMTGHRYGNQQAVNFTDT 379

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M  I+  A   S+++A+E G               P   +  L      +      R+P
Sbjct: 380 IMMNIAIWAYEESIQMAKEMG---------------PAPCLVPLEAREKFIQSGFMQRMP 424

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            + +K  +   G+RNS+ +++APT TI+   G VS   +P +   Y +   + D T    
Sbjct: 425 -EYIKDDILEWGIRNSHLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---- 479

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                 +   ++D A++   + H G   N E I    +   ATA ++ P   I   +  Q
Sbjct: 480 -----KRTETVYDYAVLK-FEEHFGENDNPEAIW-WWENYMATAQDLTPSDHIVMQAVLQ 532

Query: 865 KWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGV 919
           KW+D + S  + L E  S      +Y  A+  G K     R    T    SVE    K V
Sbjct: 533 KWVDSSISKTVNLPEDISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLSVETKEEKPV 592

Query: 920 DGKLNAVPVTD 930
           + K+ A P  D
Sbjct: 593 ETKV-AEPAYD 602


>gi|330823092|ref|YP_004386395.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
 gi|329308464|gb|AEB82879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
          Length = 811

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 163/636 (25%), Positives = 279/636 (43%), Gaps = 87/636 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF     S +E     F RVA  LA  E E  + A++  F + L +     
Sbjct: 17  ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
               +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D+
Sbjct: 73  GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L        +H       E+  E 
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWEL--------VHSA-APGAELLKEG 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             ++AD G+  ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 ARQRAD-GQW-IYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636
           C E  L         C+LG I +L  F  N         FD+D     + T VR LDNV+
Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  
Sbjct: 352 DVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYR 411

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+E+GA+  F+   +  +G F                    SRLP ++++K+++ 
Sbjct: 412 ASVELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRK 451

Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + ++V +   R
Sbjct: 452 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYAWR 510

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--Q 871
                        +    G++ ++P         A   D + ++E+    Q ++D A  +
Sbjct: 511 ------------LYKTLGGDVNQLPAYFVSAMDMA-AADHVAMMEAV---QPYVDTAISK 554

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++N+  D P       +Y QAW  GLK     R  S
Sbjct: 555 TVNVPEDYPY-DDFKGLYMQAWHSGLKGLATYRPNS 589


>gi|9631251|ref|NP_048032.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019287|gb|AAC95585.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 767

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 167/637 (26%), Positives = 271/637 (42%), Gaps = 90/637 (14%)

Query: 301 LYDRYFLHI----NGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341
            YD Y L      NG    +P  FF R+A        M   LK+T    +K    VE   
Sbjct: 97  FYDTYVLPPKPGSNGRYESIPH-FFARIAAYCAWNCIMCEPLKDTLVHIQKRDWNVELKT 155

Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389
                  FY ++SS    C+TP + ++G     LSSCF     L T    +  IFG L  
Sbjct: 156 NIQIFKYFYKVISSQLVCCATPVMRSAGIAGENLSSCFIVAPTLDTEKSTISSIFGEL-- 213

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A L     G+G D T     G +IH            LK+ N      N    R  +V 
Sbjct: 214 -APLLASRSGVGIDVTKFSFGGKNIHSC----------LKLINAQVDFFNDKSVRPVSVA 262

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSPDEV 507
            Y+E WH  + EFL  +     D  R + +     IP LF K      NA W LF P + 
Sbjct: 263 TYIEMWHCQIHEFLSAKLPENPD--RCNSIFQGVCIPSLFFKMYETDPNAQWYLFDPQDA 320

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            +L  LYG EF+   E Y R     + K  + +S  +L   ++  + +TG P++  K+  
Sbjct: 321 PNLTKLYGSEFD---EEYLRLVSTKKYK--QSVSLKSLMFSLINTIIKTGSPYVISKEAM 375

Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616
           N     +  G  ++ SNLC EI +    + T+ CNL +I L          +  +N  QF
Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQYTSTCNLANICLPKCLNGSEFPYTCSNKAQF 434

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL   ++ AV +++  I     T   A       R++G+G  G       +   Y  
Sbjct: 435 DFLKLEYAVQAAVFIINACILAPSPT--SAATVGQRERSMGIGCQGLADVFSEMGYGYLD 492

Query: 677 PEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            E+  +  +  E + + A+  S E+    +   ++ F+ S    G+F   +   + +   
Sbjct: 493 LESECLDRDIFETMYYTAVKTSSEICSIGKGQPFAGFRKSKLAHGIFHWATWDAMPQ--- 549

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           ++ M +     W  L+  +K  G+ NS  +A+ PTA  + + G + S  P + N+  K +
Sbjct: 550 KVPMKQ-----WIHLQDNIKKFGVYNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVS 604

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK---KIHATAFEI 851
              +    N   +  +K +DL        ++++    G++  +P++L    K   TAF+ 
Sbjct: 605 NKEEIMRPNLTFLKNVKPQDL------CTVRFYG---GDVSMMPEELSARYKHFLTAFDY 655

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
            P   +  AS R  ++DQ+QSL L+L E + +   +I
Sbjct: 656 CPKAQMRRASVRAPYVDQSQSLTLFLTEDNIQSAKYI 692


>gi|329922843|ref|ZP_08278359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
 gi|328941616|gb|EGG37901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
          Length = 718

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 198/404 (49%), Gaps = 34/404 (8%)

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G + + +R   A + G NG S G + +  + + T   + QGG R+GA+   +  WH
Sbjct: 8   GGGVGINLSSLRPRRAIVRGVNGSSSGAVSWGGLFSYTTGLIEQGGSRRGALMLMMNDWH 67

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-DLHDLYG 515
            DVE+F+ +++  G    +  + N +  + + FMK V ++  W L  PD    D  +L+ 
Sbjct: 68  PDVEDFITVKQTMG----QVTNANLSVCVSNDFMKAVKEDLDWELVFPDTTDPDYDELWD 123

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + +       ++A R  I  ++ + A  +W  ++   +++  P + F +  N  S   +
Sbjct: 124 GDLD-----KWKKAGR-SIIPYKTVKAREVWHTIIESAWKSAEPGVVFMEYYNQMSNSWY 177

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLD 633
              +  +N C E  L        VCNL ++NL   +  AN+   +D+LA+T R +VR LD
Sbjct: 178 FNPIICTNPCGEQGLPG----WGVCNLSAMNLSKFYDEANHDVAWDELATTTRYSVRFLD 233

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID   +  E+ + +    R +GLG MG    +  L+I Y SPE++E  D+   FI+  
Sbjct: 234 NVIDRTPYHFEENELNQKKERRVGLGTMGLAELMIKLNIRYGSPESLEFLDKLYGFIARE 293

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS ++A+E+G++ +F   L+ Q  F    +  +AEV  E+A             + V
Sbjct: 294 AYLASADIAEEKGSFQAFDAELFLQSGF----MKNMAEVYPEVA-------------EAV 336

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  G RN   +  APT +   + G S  I+P +   Y + +  G
Sbjct: 337 RKKGARNVTVITQAPTGSTGTMVGTSTGIEPYFAFKYFRQSRLG 380


>gi|167572268|ref|ZP_02365142.1| ribonucleotide reductase system [Burkholderia oklahomensis C6786]
          Length = 825

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 17  IYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 71

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 72  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 131

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 132 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 187

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 188 ITDAFMDAVEQDLPWQLVHRAEPSPARRAAG--------DLHRRDD--GMWVYAEKRARA 237

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  ++   ++   P + F    N  +  + V  + ++N C E  L +       CNLG 
Sbjct: 238 IWDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPA----YGCCNLGP 293

Query: 605 INL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA  Q     FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 294 LNLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRR 353

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    
Sbjct: 354 IGIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADR 413

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + + G F                    SRLP D+++  ++  G+RNS+ ++IAPT T+  
Sbjct: 414 YLEAGTF-------------------ASRLP-DDIQDAIRRDGIRNSHLLSIAPTGTVSL 453

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D     +F V +   R L+ E             G
Sbjct: 454 AFADNASNGIEPAFSWTYQRTKIMADGG-RRTFAVEDYAYR-LYRELG-----------G 500

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +PD       +A ++     +   +  Q ++D   ++++N+  D P     + +Y 
Sbjct: 501 DVDALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPF-DDFESLYF 555

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 556 DAWKSGLK 563


>gi|167565165|ref|ZP_02358081.1| ribonucleotide reductase system [Burkholderia oklahomensis EO147]
          Length = 843

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 160/608 (26%), Positives = 266/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 206 ITDAFMDAVEQDLPWQLVHRAEPSPARRAAG--------DLHRRDD--GMWVYAEKRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  ++   ++   P + F    N  +  + V  + ++N C E  L +       CNLG 
Sbjct: 256 IWDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA  Q     FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + + G F                    SRLP D+++  ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEAGTF-------------------ASRLP-DDIQDAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D     +F V +   R L+ E             G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGG-RRTFAVEDYAYR-LYRELG-----------G 518

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +PD       +A ++     +   +  Q ++D   ++++N+  D P     + +Y 
Sbjct: 519 DVDALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|160896563|ref|YP_001562145.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
 gi|160362147|gb|ABX33760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
          Length = 840

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 154/606 (25%), Positives = 263/606 (43%), Gaps = 89/606 (14%)

Query: 320 FFMRVAMGLALKETEKEKRAVE---FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA  LA  E E  +   E     NL    + +   M +  T   +      L +CF
Sbjct: 64  LYARVARALASVEPEARRAECEALFLANLQAGAIGAGRIMSAAGTDLQA-----TLINCF 118

Query: 373 LTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D + G        I+ AL+E A   +  GG+G D++ +R  GA +  T   + G 
Sbjct: 119 VQPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVRATASLASGP 178

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ N +  
Sbjct: 179 CSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLEFITAKRTPG----RWNNFNVSVG 234

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ V ++  W L        +H    +      E    Q   G+  V++ + A  
Sbjct: 235 VSDAFMQAVAEDQPWHL--------VH--RARPGTALLEQGAHQRADGQW-VYQTLPART 283

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  ++   ++   P I F D  N  +  ++   + ++N C E  L S       C+LG 
Sbjct: 284 LWDTIMRSAYDFAEPGILFLDHINDDNNLRYCEEIAATNPCGEQPLPS----YGCCDLGP 339

Query: 605 INLLAHFANNQF--------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           + +L  F  + F        D++     +   VR LDNV+++    + + ++ +   R I
Sbjct: 340 V-ILTRFVRHPFGFAGEPVFDFEAFERAVAVQVRALDNVLELTWWPLPQQREESEAKRRI 398

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G  +AL +L + Y +PE   +A    E +   A  ASVELA+E+GA+  F     
Sbjct: 399 GVGFTGMGNALAMLRLRYDAPEGRAMAARIAERMRDAAYGASVELAREKGAFPKF----- 453

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--AN 774
                  D+ G LAE          SRLP + L++R++T G+RNS+ ++IAPT T+  A 
Sbjct: 454 -------DADGYLAE------GTFASRLP-EALRQRIRTHGIRNSHLLSIAPTGTVSLAF 499

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               S  I+P +   Y +   + D       + +       W        + +    G++
Sbjct: 500 ADNASNGIEPPFSWTYKRKKRTADGGSAEYAVEDH-----AW--------RLYRSLGGDV 546

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQA 892
           +++P        +A ++     I      Q ++D A  +++N+  D P  +    +YRQA
Sbjct: 547 QQLP----AYFVSALQMPAAGHIAMMQAVQPFVDTAISKTVNVAADYPY-EDFKDLYRQA 601

Query: 893 WLMGLK 898
           W  GLK
Sbjct: 602 WKAGLK 607


>gi|139472880|ref|YP_001129418.1| ORF61 [Human herpesvirus 8]
 gi|87196890|gb|ABD28916.1| ORF61 [Human herpesvirus 8]
          Length = 792

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 178/726 (24%), Positives = 296/726 (40%), Gaps = 102/726 (14%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETE---------- 334
           YE      YL    LYD Y L   G+    E     FMRV++ +A +  E          
Sbjct: 111 YEDTLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARD 170

Query: 335 --------KEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDL 380
                    E   VE+ +  L++ H  C+TP L ++G    QL+SCF     +   P  L
Sbjct: 171 LIEDAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNEPGTL 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             ++  +  + +LA  SG +G D T           +    + +   LK+ +      N 
Sbjct: 231 DALYHDM--SPLLASKSG-VGLDVT-----------SFSHQKNIASCLKLVDAQVHYFND 276

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-- 498
              R     AY+E WH  + +FL+ +     DR   H +     IP LF +   ++    
Sbjct: 277 NNIRPVGASAYMELWHSQICDFLNAKLPENPDR--CHSLFQGVCIPTLFFRMYEKDPSKL 334

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FE 555
           W LF P    +L  LYG  F+  YE   R          + +S + L   M T++    +
Sbjct: 335 WYLFDPATAPNLIKLYGAAFDNEYERLVRAG--------KYVSCMPLKSMMFTLIHTIIK 386

Query: 556 TGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           TG P++  K+  N        G+ ++ SNLC EI +      T+VCNL +I L       
Sbjct: 387 TGSPYVLLKEALNEHHWTDTQGMAINCSNLCAEI-VQLPGRNTSVCNLANICLPKCLRTV 445

Query: 612 ---------ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                    AN  F  ++ L   +R AV V++  I    H     ++     R++G+G+ 
Sbjct: 446 ESARVGTTDANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVER-GQKERSMGIGVQ 504

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G       L   Y   E+ E+     + + + A+  S  L  E G    F G  W+   F
Sbjct: 505 GLADVFAELGYGYLDAESAELDKNIFQSMYYTAVETSHNLVLE-GQGVPFHG--WEVSNF 561

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                       ++ +     R  WD L K +   G+ NS  +A+ PTA  + + G ++S
Sbjct: 562 AKGRFHWQTWEGEDASF--VPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAES 619

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P + N+  K     +    N     ++   DL        ++ + G +    +   + 
Sbjct: 620 VYPFFANISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRER 673

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLK 898
            ++  TAF+  P  L++ A  R  ++DQ+QS++ +L E   +   +   +    + +GLK
Sbjct: 674 YRVFLTAFDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLK 733

Query: 899 T-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--IPS-------SCTSDT 948
           T  YY R +  +S+  + L+ +     A P + P+S     G  +P        SC +D 
Sbjct: 734 TLMYYCRVQKQSSL--TALQCL-----ADPGSPPHSGMKQDGAWLPGPKNPEEESCAADP 786

Query: 949 ECEVCQ 954
           EC VCQ
Sbjct: 787 ECLVCQ 792


>gi|1718317|gb|AAC57146.1| ORF 61 [Human herpesvirus 8 type M]
 gi|2246520|gb|AAB62645.1| ORF 61 [Human herpesvirus 8]
 gi|261853542|gb|ACY00464.1| ORF61 [Human herpesvirus 8]
 gi|312275209|gb|ADQ57946.1| core gene UL39 family protein [Human herpesvirus 8]
          Length = 792

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 180/725 (24%), Positives = 296/725 (40%), Gaps = 100/725 (13%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETE---------- 334
           YE      YL    LYD Y L   G+    E     FMRV++ +A +  E          
Sbjct: 111 YEDTLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARD 170

Query: 335 --------KEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGI 383
                    E   VE+ +  L++ H  C+TP L ++G    QL+SCF+   P  +   G 
Sbjct: 171 LIEDAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQ-PSMMNESGT 229

Query: 384 FGALQEN--AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             AL  +   +LA  SG +G D T           +    + +   LK+ +      N  
Sbjct: 230 LDALYHDMSPLLASKSG-VGLDVT-----------SFSHQKNIASCLKLVDAQVHYFNDN 277

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--W 499
             R     AY+E WH  + +FL+ +     DR   H +     IP LF +   ++    W
Sbjct: 278 NIRPVGASAYMELWHSQICDFLNAKLPENPDR--CHSLFQGVCIPTLFFRMYEKDPSKLW 335

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML---FET 556
            LF P    +L  LYG  F+  YE   R          + +S + L   M T++    +T
Sbjct: 336 YLFDPATAPNLIKLYGAAFDNEYERLVRAG--------KYVSCMPLKSMMFTLIHTIIKT 387

Query: 557 GHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---- 611
           G P++  K+  N        G+ ++ SNLC EI +      T+VCNL +I L        
Sbjct: 388 GSPYVLLKEALNEHHWTDTQGMAINCSNLCAEI-VQLPGRNTSVCNLANICLPKCLRTVE 446

Query: 612 --------ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                   AN  F  ++ L   +R AV V++  I    H     ++     R++G+G+ G
Sbjct: 447 SARVGTTDANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVER-GQKERSMGIGVQG 505

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                  L   Y   E+ E+     + + + A+  S  L  E G    F G  W+   F 
Sbjct: 506 LADVFAELGYGYLDAESAELDKNIFQSMYYTAVETSHNLVLE-GQGVPFHG--WEVSNFA 562

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                      ++ +     R  WD L K +   G+ NS  +A+ PTA  + + G ++S+
Sbjct: 563 KGRFHWQTWEGEDASF--VPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESV 620

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P + N+  K     +    N     ++   DL        ++ + G +    +   +  
Sbjct: 621 YPFFANISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERY 674

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYRQAWLMGLKT 899
           ++  TAF+  P  L++ A  R  ++DQ+QS++ +L E   +   +   +    + +GLKT
Sbjct: 675 RVFLTAFDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKT 734

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--IPS-------SCTSDTE 949
             YY R +  +S+  + L+ +     A P + P+S     G  +P        SC +D E
Sbjct: 735 LMYYCRVQKQSSL--TALQCL-----ADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPE 787

Query: 950 CEVCQ 954
           C VCQ
Sbjct: 788 CLVCQ 792


>gi|9626017|ref|NP_040263.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|266914|sp|Q01037|RIR1_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|66407|pir||WMBEP6 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60382|emb|CAA45684.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|330990|gb|AAA46137.1| ribonucleotide reductase large subunit [Saimiriine herpesvirus 2]
          Length = 767

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 174/664 (26%), Positives = 280/664 (42%), Gaps = 94/664 (14%)

Query: 301 LYDRYFL----HINGSRIEMPQAFFMRVA--------MGLALKET----EKEKRAVE--- 341
            YD Y L     +NG    +P  FF R+A        M   LK+T    +K    VE   
Sbjct: 97  FYDTYVLPPRTEMNGKYESIPH-FFARIAAYCAWNCIMCEPLKDTLVYVQKRDWNVEIKT 155

Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQE 389
                  FY ++SS    C+TP + ++G     LSSCF     L T    +  IFG L  
Sbjct: 156 DMQIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGEL-- 213

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A L     G+G D T     G +IH            LK+ N      N    R  +V 
Sbjct: 214 -APLLASRSGVGVDVTKFSFGGKNIHSC----------LKLINAQVEFFNDKSVRPVSVA 262

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV 507
            Y+E WH  + EFL  +     D  R + +     +P LF K      N  W LF P + 
Sbjct: 263 TYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYLFDPQDA 320

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            +L  LYG EFE   E Y R     + K  + ++  +L   ++  + +TG P++  K+  
Sbjct: 321 PNLTRLYGLEFE---EEYLRLVSEKKYK--QSVTLKSLMFSLINTIIKTGSPYVISKEAM 375

Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--------LAHFANN--QF 616
           N     +  G  ++ SNLC EI +    + T+ CNL ++ L          +  +N  QF
Sbjct: 376 NKHHWYETQGEAINCSNLCAEI-VQQPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQF 434

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL   ++ AV +++  I     T   +       R++G+G  G       +   Y  
Sbjct: 435 DFSKLEYAVQAAVFIINACILSPSPT--SSATVGQRERSMGIGCHGLADVFSEMGYGYLD 492

Query: 677 PEAVEIADESMEFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            E+  +  +  E + + A+  S E+    +   ++ F+ S    GVF   +   + +   
Sbjct: 493 LESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--- 549

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                R     W  L+  +K  G+ NS  +A+ PTA  + + G + S  P + N+  K +
Sbjct: 550 -----RVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVS 604

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK---KIHATAFEI 851
              +    N   +  +K +DL        ++++    G++  +P+D+    K   TAF+ 
Sbjct: 605 NKEEIMKPNITFLKNVKPQDL------CTVRFYG---GDVSMMPEDVSTRYKHFLTAFDY 655

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
            P   +  AS R  ++DQ+QSL L+L E    S K L  +    + +GLKT  YY R + 
Sbjct: 656 CPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKK 715

Query: 908 ATSV 911
            T +
Sbjct: 716 TTKL 719


>gi|297618137|ref|YP_003703296.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145974|gb|ADI02731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 571

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/589 (25%), Positives = 252/589 (42%), Gaps = 85/589 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDL 380
           R+A  +A  E E  +    F  ++    F+ STP   N G   R  Q ++CF+  + D L
Sbjct: 33  RLARTVATAEKEPSQWEERFARIIGELFFVPSTPIWANVGKPDRPWQPAACFVLPLEDSL 92

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +F  L++ A++ K  GG+G +++ +R  G  +  + G++ GV+  L++ +  A  + Q
Sbjct: 93  ESVFETLKDTALVFKSGGGVGYNFSAIRPRGFPVRSSQGQAFGVVELLRLYDHAAGIIVQ 152

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R+GA    L   H ++ EF+  +   G       + N +  + D FM+ V +N  W 
Sbjct: 153 GGVRRGACMGILNADHPEILEFIRAKLAGG-----LANFNLSVGVGDAFMEAVRENGTWR 207

Query: 501 L-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           L F+   +++L                               A  +W  ++      G P
Sbjct: 208 LVFNGQAIAEL------------------------------PAAEVWEAIVEASHACGEP 237

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDY 618
            + F D     +P +   V+ ++N C E+ L +       C LGSINL     A      
Sbjct: 238 GLVFLDALQRSNPIRGT-VIAATNPCGEVPLLAGES----CILGSINLAPMVDAAGNLKE 292

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +LA T+  AVR LDN+ID+  + +    ++    R IG+G  G   AL    + Y S E
Sbjct: 293 VQLAETVGIAVRFLDNLIDVGQYPLTFIAQTTRATRRIGVGFTGLADALIKSGLAYDSEE 352

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
               AD +   I   A  AS ELA+E+GA+  +  S++    +P D              
Sbjct: 353 GRAWADRAAAIIKAAAEEASRELAREKGAFPWWGRSVY----YPDDP------------- 395

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMS 796
                               RN+  +++APT ++  I       I+P +   Y KS + +
Sbjct: 396 -------------------RRNAALLSVAPTGSVTLIAACEGYGIEPIFAVAYTKSTSAA 436

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G   V +   + E ++  +  E + S++    GS   ++ IP D+ ++   A EI P   
Sbjct: 437 GKIEVFSPLFLQECERHGI-PETVRSEVARR-GSCQGVDGIPADMARVFKGAREIAPEDH 494

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +   +  QK +D A S  + L  E +   +D  +R AW +GLK     R
Sbjct: 495 LLMQAAVQKHVDNAVSKTVNLPREATPADVDHTFRLAWELGLKGVTVFR 543


>gi|167647819|ref|YP_001685482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
 gi|167350249|gb|ABZ72984.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
          Length = 744

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 209/483 (43%), Gaps = 70/483 (14%)

Query: 321 FMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV- 376
           + RVA  +A  ET K ++    E  + L+ F F+ +   L  +GT R   L +CF+  V 
Sbjct: 33  WARVAHAIAEAETPKLRKGFQAEVMDALADFKFLPAGRILAGAGTARSVTLFNCFVMGVT 92

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL GIF  ++E A+  +  GG+G D++ +R  GA + G    + G + F+ V +    
Sbjct: 93  PDDLGGIFEHVREAAVTLQQGGGVGMDFSSIRPAGARVEGVGADASGPLSFMDVWDSMCR 152

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            +   G+R+GA+   L   H D+E F+D ++       R  + N +  + D FM  +  +
Sbjct: 153 TILSAGQRRGAMMGCLRIDHPDIEAFIDAKRTA----NRFRNFNLSVLVTDPFMAALDAD 208

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W L            +G + +                  R + A  LW +++   ++ 
Sbjct: 209 GDWPLS-----------FGGQVQ------------------RTVRAADLWAQLMRATYDA 239

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
             P + F D  N  +   +   + +SN C E  L         C LGS+NL A   +N F
Sbjct: 240 AEPGVIFIDRVNAANNLAYCEQILASNPCGEQML----PPYGACLLGSLNL-ARLVDNPF 294

Query: 617 ------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 D D+L +  RTAVR+LDNVIDI+   +E         R +G+G+ G   AL   
Sbjct: 295 EADAALDEDRLGALARTAVRMLDNVIDISRFPLEAQAVEARAKRRLGIGVTGLADALVFC 354

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y   +AV +    +  I   A  AS  LA E+  +      L+D  +    ++  L 
Sbjct: 355 GARYGDDQAVALTQRWLGVIKREAYRASARLAAEKAPF-----PLYDPQILDRPNLTSLD 409

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNL 789
           E                E +  +   G+RN    +IAPT T + + G VS  I+P +   
Sbjct: 410 E----------------ETRALIAAHGLRNGCLTSIAPTGTTSLLAGNVSSGIEPVFAYA 453

Query: 790 YVK 792
           Y +
Sbjct: 454 YTR 456


>gi|91791299|ref|YP_552249.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91701180|gb|ABE47351.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 858

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 160/613 (26%), Positives = 263/613 (42%), Gaps = 78/613 (12%)

Query: 320 FFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            F RVA G+A  E     EK +R V F N++          +   +G +   L++CF+  
Sbjct: 40  IFARVAKGIAQAEQPELREKYER-VFFDNMMRGAIGAGRIMSAAGTGIKA-TLANCFVQP 97

Query: 376 VPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           V D + G        I+ AL+E A   +  GG+G D++ +R  G+ + GT   + G   +
Sbjct: 98  VGDAIQGVDTEGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGSVVKGTASSASGPCSY 157

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           + V + +   V   G R+GA    ++  H D+ EF+  ++  G    R ++ N +  I D
Sbjct: 158 IDVFDASCKTVESAGARRGAQMGVMKISHPDILEFITAKREVG----RWNNFNVSVGIVD 213

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM  V  N  W L    E S      G         Y R++D   + V+R++ A  +W 
Sbjct: 214 GFMAAVEANEMWPLVHKAEPSVEQQRAGA--------YLRESD--GLWVYREVPAAEIWD 263

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            ++   ++   P I F D  N+ +   +V  + ++N C E  L         C+LG I +
Sbjct: 264 TVMKSCYDFAEPGIVFLDLMNLDNNLSYVETIEATNPCAEQPL----PPYGCCDLGPI-I 318

Query: 608 LAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L  F +        FD +   + ++   R LDNV+ +    +E+ +K     R IG G  
Sbjct: 319 LPKFVSRAFTERAAFDDEGFKAAVKIQTRFLDNVLSVTHWPLEQQRKEAEAKRRIGAGFT 378

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGV 720
           G    L +L I Y S E VE +      +   A  AS++LA E+G +  F    +  +G 
Sbjct: 379 GLGDMLAMLGIRYNSIEGVEFSRHVALMMRDAAYEASIDLAIEKGPFPLFDADKYLKKGT 438

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGV 778
           F                    SRLP   LK R++  G+RNS+ ++IAPT T+  A     
Sbjct: 439 F-------------------ASRLP-KSLKDRIRRHGIRNSHLLSIAPTGTVSLAFADNA 478

Query: 779 SQSIDPSYQNLYVKSNMSGD----FTVVN---SFLVNELKQRDLWDEAMISDLKYHDG-- 829
           S  I+P +   Y +    GD    + VV+      +  +  ++L    + +  +Y     
Sbjct: 479 SNGIEPPFALAYTRKKRVGDGHVNYNVVDHAFRVFLETVCAQELRAPLLEAVSRYQPAFE 538

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDF 887
             G   ++ D +     TA E+     +   +  Q  ID A  +++N+  D P     DF
Sbjct: 539 VAGKTYQVKDCIPPSIVTAQEMSAAEHLAVMAAVQPLIDTAISKTVNVPEDYPYD---DF 595

Query: 888 --IYRQAWLMGLK 898
             +Y QAW   LK
Sbjct: 596 KNLYMQAWKANLK 608


>gi|319761225|ref|YP_004125162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
 gi|317115786|gb|ADU98274.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
          Length = 811

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 236/525 (44%), Gaps = 67/525 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF     S +E     F RVA  LA  E E  + A++  F + L +     
Sbjct: 17  ISMDVLKEKYFKD-GESDVE---DLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
               +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D+
Sbjct: 73  GR-IMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L        +H       E+  E 
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWEL--------VHSA-APGAELLKEG 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             ++AD G+  ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 ARQRAD-GQW-IYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636
           C E  L         C+LG I +L  F  N         FD+D     + T VR LDNV+
Sbjct: 297 CGEQPL----PPYGCCDLGPI-ILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVL 351

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  
Sbjct: 352 DVTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYR 411

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+E+GA+  F+   +  +G F                    SRLP ++++K+++ 
Sbjct: 412 ASVELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRK 451

Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGD 798
            G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D
Sbjct: 452 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREAD 496


>gi|294338964|emb|CAZ87308.1| Putative Ribonucleoside-diphosphate reductase large chain
           [Thiomonas sp. 3As]
          Length = 811

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 159/594 (26%), Positives = 268/594 (45%), Gaps = 78/594 (13%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT----TVP 377
           RVA  LA++E +  +    F   L+   F+ +   +  +GT     L +CF+     +V 
Sbjct: 29  RVARALAVEEADPARSEALFRQALAD-GFVPAGRIMSAAGTDIQATLINCFVQPVGDSVS 87

Query: 378 DDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           DD  G   I+ AL + A   +  GG+G D++ +R +GAH+ GT+ ++ G + F++V + +
Sbjct: 88  DDKEGKPSIYKALAQAAETMRRGGGVGYDFSRIRPVGAHVGGTHSRASGPLSFMRVFDAS 147

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L   H D+E F+  +     D+    + N +  +   FM+ + 
Sbjct: 148 CETVESAGSRRGAQMGVLRIDHPDIEAFIHAK-----DQGAFKNFNLSVGVSAAFMQAIE 202

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +A        ++  +H     + ++A E   ++AD GE  V+R + A ALW +++   +
Sbjct: 203 NDA--------QIDLVHKARPGDDQLA-EGAHQRAD-GEW-VYRSVRARALWDQIMQSTY 251

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           +   P I F D  N  +   +     ++N C E  L     +   C LGSINL   F  +
Sbjct: 252 DHAEPGILFLDTANADNNLYYCETFEATNPCAEEFL----PDYGCCCLGSINL-TRFVRD 306

Query: 615 ------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD +   +  R AVR+LDNV+D+    + +        R IGLG +G   A  
Sbjct: 307 PFTPKARFDAEGFQAVTRVAVRMLDNVLDVTYWPLVEQHNEAQNKRRIGLGFLGLGDACV 366

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y S +A   A +    +   A +ASV+LA+E+GA+  F  + +    F       
Sbjct: 367 MLGLRYDSDDARRFAADLARTLRDAAYAASVDLAKEKGAFPLFDATKYLDSGF------- 419

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786
                         RLP + L+  +   G+RNS+ +A+APT TI  A     S  I+P++
Sbjct: 420 ------------AKRLP-EALRADIAAHGIRNSHLLAVAPTGTISLAFADNASNGIEPAF 466

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             +Y +     D         N  ++ ++ D A      Y   S+G   R    L     
Sbjct: 467 SWVYTRKKRMAD---------NTTREYEVADHAW---RLYR--SMG---RDMSALPPAFV 509

Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           TA E+     ++     Q +ID   ++++N+  D P     D +Y QAW  GLK
Sbjct: 510 TALEMSATDHMKMLQVVQPFIDTSISKTVNVPADYPYDDFKD-LYLQAWKAGLK 562


>gi|154252043|ref|YP_001412867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
 gi|154155993|gb|ABS63210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 771

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 210/471 (44%), Gaps = 67/471 (14%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKY 396
           A  F+  ++ + F+ +   L  +GT R   L +CF +  +PD + GIF  L+E A+  + 
Sbjct: 51  AKRFHEAMAGYRFLPAGRILAGAGTGRDVTLFNCFVMGEIPDTMEGIFQNLKEAALTMQQ 110

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G D++ +R  GA + G    + G + F+ V +     +   G R+GA+ A +   H
Sbjct: 111 GGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDH 170

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+E F++ ++  G    R    N +    D FM  V  +A W L            +G 
Sbjct: 171 PDIEAFIEAKQEPG----RLTMFNLSVLATDAFMAAVKADADWEL-----------TFGG 215

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                              VF+ + A ALW +++   +    P + F D  N R+   + 
Sbjct: 216 ------------------TVFKTLKARALWDRIIAATYAYAEPGVIFIDRINARNNLYYA 257

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRV 631
             +H++N C E  L         C LGSINL A        N   D  +L+  +  AVR 
Sbjct: 258 ETIHATNPCGEQPL----PPYGACLLGSINLAALVKEPFTENAHIDESELSELVHVAVRA 313

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +DN ID++   + + +      R IGLG+ G   AL +    Y S  +V +  + M+ +S
Sbjct: 314 MDNTIDVSRFPLPEQRHEATAKRRIGLGVTGLADALIMCRARYGSEASVTLIRKWMKVLS 373

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELK 750
             A  ASV++A+E+G +  F    +  G    ++I  L  ++RD +A +           
Sbjct: 374 RAAYLASVDIAKEKGPFLLFVADAYLAG----ETISALDKDIRDAIAEH----------- 418

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFT 800
                 G+RN+   +IAPT TI+   G VS  I+P +   Y +  +  D T
Sbjct: 419 ------GIRNALVTSIAPTGTISLFAGNVSSGIEPVFAYGYKRKVLMPDGT 463


>gi|83717926|ref|YP_440130.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
 gi|83651751|gb|ABC35815.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 881

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 73  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 127

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 128 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 187

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 188 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 243

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 244 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 293

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 294 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 349

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 350 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 409

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y + E  + A      +   A  ASVELA ERGA+  F  S 
Sbjct: 410 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 469

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  
Sbjct: 470 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 509

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E             G
Sbjct: 510 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 556

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +P        +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 557 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 611

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 612 DAWKSGLK 619


>gi|257140761|ref|ZP_05589023.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 843

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSSIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y + E  + A      +   A  ASVELA ERGA+  F  S 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E             G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +P        +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|237651505|ref|YP_002898976.1| putative ribonucleoside-diphosphate redutase [Roseophage EE36P1]
 gi|220898137|gb|ACL81394.1| putative ribonucleoside-diphosphate redutase [Sulfitobacter phage
           EE36phi1]
          Length = 776

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 154/582 (26%), Positives = 251/582 (43%), Gaps = 78/582 (13%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQEN 390
           TE++     FYN L  F F+ +      +GT R+  L +C+ + T+PD L GIF  L+E 
Sbjct: 56  TERDALEARFYNALYDFKFLRAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEA 115

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A+  +  GG+G D++ +R  GA + G    S G + F+ V +     +   G R+GA+ A
Sbjct: 116 ALTMQQGGGIGYDFSTLRPKGALVRGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMA 175

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D+ +F+  ++    D  R  + N +    D FM+ V+ ++ W L         
Sbjct: 176 TMRCDHPDIMDFVTAKQ----DPLRLRNFNVSVLCTDEFMEAVSADSDWDLVF------- 224

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 + KV++ I A  LW  +L   +    P + F D  N  
Sbjct: 225 ----------------------DGKVYQTIKAKELWDAILWNTYNYAEPGVIFIDRINKE 262

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ--FDYDKLAST 624
           +    +  + ++N C E  L         C LGS+NL  H    F   Q   D   L  T
Sbjct: 263 NNLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVVFPFVKGQAEIDMGMLEQT 318

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RT VR+LD+V++ +   +E  +      R  GLG+ G   AL +    Y S +AV+  D
Sbjct: 319 VRTGVRILDSVVETSLFPLEAQRDEARFKRRQGLGVTGLADALFMTGHKYGSEQAVDFTD 378

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR-TSR 743
             M  I+  A   S+++A+E G                     +  E R++   +    R
Sbjct: 379 TIMMNIAIWAYEESIKMAKEMGPAPCL----------------VSKEAREKFIQSGFMQR 422

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802
           +P   +K  +   G+RNS+ +++APT TI+   G VS   +P +   Y +   + D T  
Sbjct: 423 MP-QYIKVGILEWGIRNSHLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT-- 479

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                   +   ++D A++   + H G   N E I    +   ATA ++ P   I   + 
Sbjct: 480 -------KRTETVYDYAVLK-FEEHFGENDNPEAIW-WWENYMATAQDLTPADHIVMQAV 530

Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTY 901
            QKW+D + S  + L E  S      +Y  A+  G K  TTY
Sbjct: 531 IQKWVDSSISKTVNLPEDISFDDFKAVYDHAYTTGCKGCTTY 572


>gi|167616835|ref|ZP_02385466.1| ribonucleotide reductase system [Burkholderia thailandensis Bt4]
          Length = 843

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 269/608 (44%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G        +  R+ D   + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAG--------DLHRRDD--GMWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+D LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y + E  + A      +   A  ASVELA ERGA+  F  S 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYRASVELACERGAFPLFDASR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D++++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLP-DDIREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E             G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYRELG-----------G 518

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
           +++ +P        +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 519 DVDALP----GYFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|237748699|ref|ZP_04579179.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
 gi|229380061|gb|EEO30152.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
          Length = 963

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 172/636 (27%), Positives = 294/636 (46%), Gaps = 91/636 (14%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEF-YNLLS 347
           +A + +  ++L ++Y    N + +E       RVA  LA  E  K K+  A EF + L +
Sbjct: 19  YAPQEISTEVLLEKY-AKGNETSVE---EVMERVAQALAEVEAPKNKKKYAEEFLWALQN 74

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGL 400
            F       +   +G +   L +CF+  V D +        GI+ AL + A   +  GG+
Sbjct: 75  GFIPAGRVSSAAGTGLQT-TLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGV 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA + GT   + G I ++KV + +   V   G R+GA  A L   H D+ 
Sbjct: 134 GYNFSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIV 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+ +++    ++ +  + N +  + D FM+ V  +  + L    E ++         E+
Sbjct: 194 EFITIKQ----EQNQLSNFNVSVGVTDKFMQAVESDGDFELAHVAEPNN---------EL 240

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             +   ++AD G+  V+ K+ A  +W  ++   +    P + + D  N  +   +  V+ 
Sbjct: 241 KEKGSYKRAD-GKW-VYSKVKARDIWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIE 298

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNV 635
           ++N C E  L     +   C LGS+NL +       A+  FD++  A   + AVR+LDNV
Sbjct: 299 ATNPCGEQPL----PDYGCCCLGSLNLTSFVTAPFSAHPLFDFNLFARVTKIAVRMLDNV 354

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +E+  K     R IGLG  G   AL +L I Y S EA  ++ E  + +   A 
Sbjct: 355 LTATKWPLEEQAKEAAAKRRIGLGFTGLGDALIMLGIRYDSEEARILSSEISKAMRDAAY 414

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           S S++LA+ERGA             FP      + +V + L     SRLP +E+K +++ 
Sbjct: 415 SGSIDLAKERGA-------------FP------MLDVENYLKGGFVSRLP-EEMKAQIRK 454

Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+  +IAPT TI  A     S  I+P++   Y +     D +  N + V +   R
Sbjct: 455 HGIRNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPDGSKKN-YTVEDHAYR 513

Query: 814 DLWDEAMISDLKYHDGSIGN-IERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQ 869
                       Y   S+GN + ++PD       +A E   ID M ++ + +    +ID 
Sbjct: 514 -----------IYR--SMGNDVSKLPD----YFVSALEISAIDHMLMVAAVA---PYIDA 553

Query: 870 A--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
           A  +++N+  + P  +    +Y +AW  GLK  TTY
Sbjct: 554 AISKTVNVAEEYPY-EDFKNLYMEAWKKGLKGITTY 588


>gi|251797975|ref|YP_003012706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
 gi|247545601|gb|ACT02620.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
          Length = 864

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 222/489 (45%), Gaps = 39/489 (7%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFM-CSTPTLFNSGTRHPQLSSCF 372
           P+  + R+A  +A  E  +EKR      F  +L  +  +           +    L +C+
Sbjct: 86  PEEMWNRLAGAMAGVEQGEEKRRTWTERFRYILDDWKLVPGGRIAAGAGASDELTLFNCY 145

Query: 373 LTTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +   P D  G I   L E   +    GG+G + + +R   A + G NG S G + +  + 
Sbjct: 146 VIPSPKDSRGGIMTTLSEMTEIMARGGGVGINLSSLRPRRAVVAGVNGSSSGAVSWGGLF 205

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +  + + FMK
Sbjct: 206 SYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVSNAFMK 261

Query: 492 RVTQNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            V ++  W L  PD + +D  +L+  + E A++   ++     +  ++ + A  +W  ++
Sbjct: 262 AVKEDLDWELVFPDTKETDYDELWDGDLE-AWKKLGKK-----VVHYKTVRARDVWHTII 315

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
              +++  P + F +  N  S   +   +  +N C E  L        VCNL +INL   
Sbjct: 316 ESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAINLSKF 371

Query: 611 FANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           +  ++ D  +++L    + +VR LDNVID   +  E+ +K+    R +GLG MG    + 
Sbjct: 372 YDESKHDVNWEELGKVTQWSVRFLDNVIDTTPYHFEENEKNQKKERRVGLGTMGLAELMI 431

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L + Y SPE++   D+   F++  A  AS E+A E+G++ +F    + Q  F       
Sbjct: 432 KLGVRYGSPESLLFLDKIYGFMAREAYLASAEIASEKGSFEAFDAEKFLQSGF------- 484

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                     N  S  P  E+ + V   GMRN   +  APT +   + G S  I+P +  
Sbjct: 485 --------MKNMVSEFP--EVGEAVLAKGMRNVTVITQAPTGSTGTMVGTSTGIEPYFAF 534

Query: 789 LYVKSNMSG 797
            Y + +  G
Sbjct: 535 EYFRQSRLG 543


>gi|312114419|ref|YP_004012015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219548|gb|ADP70916.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 762

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 147/589 (24%), Positives = 246/589 (41%), Gaps = 97/589 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAML 393
           EKR   F + ++ F F+ +   L  +GT R   L +CF +  + DD+  IF  ++E A+ 
Sbjct: 51  EKR---FLDAMADFAFIPAGRILAGAGTGRDVTLFNCFVMGEIGDDMGSIFAHVREAALT 107

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            +  GG+G+D++ +R  GA + G    + G + F+ V +     +   G R+GA+   L 
Sbjct: 108 LQQGGGIGHDFSTLRPKGAPVKGVGADASGPVSFMDVWDAMCRTIMSAGSRRGAMMGTLR 167

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +     D  R  + N +  + D FM+ V  +A W L            
Sbjct: 168 CDHPDIEAFIEAKA----DPARLRNFNLSVLVTDAFMEAVKADARWPL------------ 211

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   +E            VFR++SA  LW K++   ++   P + F D  N  +  
Sbjct: 212 -------TFEG----------TVFREVSARGLWLKIMRSAYDYAEPGVIFIDRVNAANNL 254

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGSINL A          + D  +L   +  A
Sbjct: 255 AWCETISATNPCGEQPLPP----YGACLLGSINLAALIEKPFEPEARLDEARLERLVPVA 310

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDN+ID++ + +   ++     R IGLG+ G   AL      Y       +A   M 
Sbjct: 311 VRLLDNIIDVSRYPLPSQEREAKAKRRIGLGVTGLADALIFCGAHYGEESGRALAASWMA 370

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            IS  A  AS  LA+E+GA+  F    +    FP                   + LP   
Sbjct: 371 RISELAYEASAALAKEKGAFPLFDAEAFLARPFP-------------------ASLP-PP 410

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTV----VN 803
           L+K ++  G+RN    +IAPT TI+ + G VS  ++P +   + +  +  D +     V 
Sbjct: 411 LQKAIRQHGIRNGVLTSIAPTGTISLLAGNVSSGVEPVFDFEFSRRVLQPDGSARHETVE 470

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            + V   ++R               GS        + L      A E+ P   +E  +  
Sbjct: 471 DYAVRIFRER--------------QGS--------EPLPPAFVAARELTPAQHLEMQAAL 508

Query: 864 QKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+ +D   ++++N     P  +  + +Y  A+ +GLK     R  + T 
Sbjct: 509 QRHVDASISKTVNCPASIPF-EDFEMLYADAYRLGLKGCTAYRPNAVTG 556


>gi|229543872|ref|ZP_04432931.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
 gi|229325011|gb|EEN90687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
          Length = 852

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 171/673 (25%), Positives = 279/673 (41%), Gaps = 122/673 (18%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FYN L + +F+ +   L+ +G+       +C++   VP
Sbjct: 136 RNATGLAAVEKTEEKRNEWFEKFYNELVNLNFIPAGRVLYGAGSETEVTYFNCYVMPFVP 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD--RRRTHD------ 478
           V QGG R+GA    L  WH D+ EF+            L +NT D+  R+  HD      
Sbjct: 256 VEQGGSRRGAQMIMLAVWHPDIVEFIISKMQNPRILRFLIENTNDEWIRKLAHDKLKFTP 315

Query: 479 ---MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG-------------------- 515
              M    +   +  K +    G+T     E  +  +  G                    
Sbjct: 316 LSEMERQMYHGIVNYKHIPGQGGFTEEVMKEAEEKLETGGHYTVHNPEFLTGANISVCLT 375

Query: 516 ----------KEFEIAY---ENYERQADR---------GEIK----------VFRKISAV 543
                      EFE+ +   ENY  +  R         G+++          V+RKI A 
Sbjct: 376 KEFMEAVEQDAEFELKFPDVENYSEEEMRIYNEEWHKIGDVREWEKLGRKVRVYRKIKAK 435

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
            LW  +      +  P + F D  N  +  +  G  V ++N C E  L   S    VCNL
Sbjct: 436 ELWNLINICATYSAEPGVFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPYS----VCNL 491

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL  +      +  +D+L  T+RT VR+ DNVID   + +++ KK     R +GLG+
Sbjct: 492 AAVNLAKMVDKETKEVRWDQLKQTVRTGVRMQDNVIDATPYFLKENKKQALGERRVGLGV 551

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L  +   Y S E  ++ D+  E I+  A  AS+E+A+E+G++    G   ++  
Sbjct: 552 MGLADLLIYMEKEYGSEEGNKLVDKVFETIATEAYRASIEIAKEKGSFPFLTGETEEE-- 609

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   L     E    +   +P D ++K +   G+RNS+ + +APT +   + GVS 
Sbjct: 610 -----TNRLRHAFTETGYMKN--MPED-IRKAILKHGIRNSHLLTVAPTGSTGTMVGVST 661

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            ++P +   Y +S   G F  VN+ +V E              L  H       E   D 
Sbjct: 662 GLEPYFSFSYFRSGRLGKFIEVNADIVQEY-------------LDKHP------ETDKDH 702

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGL 897
           L     TA ++ P    +     Q+W+D   S++  ++ P G   ++++ +Y + +  G 
Sbjct: 703 LPNWFVTAMDLAPEAHADVQCVIQRWVD--SSISKTVNAPRGYTVEQVEKVYERLYKGGA 760

Query: 898 K--TTYYLRSRSA 908
           K  T Y   SR +
Sbjct: 761 KGGTVYVDGSRDS 773


>gi|197294206|ref|YP_001798747.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853533|emb|CAM11391.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 856

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 180/702 (25%), Positives = 299/702 (42%), Gaps = 94/702 (13%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E    ++ E VK +L H   +   L +L  +  YE DF  +Y   QI  D Y       +
Sbjct: 188 EALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIK-DIY-------K 239

Query: 314 IEMPQAFFMRVAMG-------LALK--------ETEKEKRAVE-FYNLLSSFH------- 350
           I   + F     MG        ALK        ET +++  V   Y+    F        
Sbjct: 240 IAYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIK 299

Query: 351 ------FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                 F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  +
Sbjct: 300 SLINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSIN 359

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  G  I G  G  +GV+   K+ + +    +Q G+R GA   YL  +H D+E+FL
Sbjct: 360 ITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLSVFHADIEDFL 419

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D+  R   ++    +P+  ++   +N     F P  V      Y K F     
Sbjct: 420 STKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTV---FLEYEKNFADIAV 476

Query: 524 NYERQAD--RGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           N +   D      KV +K I    L   +  M  E+G+P++ F D  N ++   H+  V 
Sbjct: 477 NMDYWYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVN-QNNTSHLQ-VK 534

Query: 581 SSNLCTEI---TLNS------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
            SNLCTEI   T+ S       ++E  +    S NL +   +N  + + +  T+  A+ V
Sbjct: 535 FSNLCTEILQPTITSHYTDYNHTQEDKIGMDVSCNLASGHMSNMINNNTIKETVFMAMEV 594

Query: 632 LDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++ V +  N + +    K+N  +R++G G+MG    L   +I + S E  ++ D     I
Sbjct: 595 MNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAI 654

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---- 745
           +++++  S + A++ G  +  F+ S +  G +      +L +      M     LP    
Sbjct: 655 NYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKD 714

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +LKK V+  G+ NS+ +A+AP  TI  I G + S+ P  Q                  
Sbjct: 715 WQQLKKDVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQ------------------ 756

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV E    +      +  LK              +   ++ TA++++   LI+  +  QK
Sbjct: 757 LVEERTYGNSKTYCPMPGLK--------------ETSFMYVTAYKMNKYQLIDVIATAQK 802

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +DQ  S  L +  + + ++L   Y  A   G+KT YY R++
Sbjct: 803 HVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQ 844


>gi|320450942|ref|YP_004203038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
 gi|320151111|gb|ADW22489.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
          Length = 586

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 158/636 (24%), Positives = 266/636 (41%), Gaps = 98/636 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAV-EFYNLLS 347
           F  + L   +   RY L     R+    P+  + R+  G+    T  EK A  EF  L S
Sbjct: 18  FQGDELRASVFLHRYALKDPEGRLLEATPEEMWQRLVQGV----TRVEKGATQEFSWLFS 73

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
            F F+     LF  G  R   L +C+   + +D + GI   L E A    Y GG+G++  
Sbjct: 74  DFRFVPGGRILFGLGNWRRSTLFNCYYIPIREDSVKGITRFLDEAARTFAYGGGVGSNAD 133

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +     +S G + F+++ +  A  +   G R+GA+       H D+ +FL +
Sbjct: 134 ALRPKGAKVGNAGMESSGAVSFMELFSTLAGVMGASGGRRGALMLTFSDTHPDLLDFLQV 193

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +  T  +R R    N +    D F++    +  WTL                F    E+ 
Sbjct: 194 K--TDPERSRVRHANISLRATDAFLQAALADEPWTL---------------SFTTPREH- 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584
                     + R I A   W  ++   +++  P + F D     +  Q+ G+ V   N+
Sbjct: 236 ----------ITRTIRAKEAWDLLVEAAWQSAEPGLLFWDRVRTWATAQYGGMEVEGVNV 285

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDI 638
           C E+ +    E    CNLGS+NL+A F    F      DY  L    R AVR LD V+D+
Sbjct: 286 CGEVPM----EPYGACNLGSLNLVA-FVQEPFTDRARLDYAGLEEATRLAVRFLDAVVDL 340

Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N H +   ++++   R +GLG+MG    L +L +PY + E++  A+E M  I   A  
Sbjct: 341 GKNRHPLRAQREASLRSRRVGLGIMGLADTLAMLGLPYGAEESLTFAEEVMRRIKEAAYW 400

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S  LA++RG++ +F                   + ++ +       LP + L + V+  
Sbjct: 401 ESTRLARQRGSFPAF-------------------DPKEHIKSPFIQSLP-EALIQAVEK- 439

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN+  ++IAPT +I+ + GV+  I+P +   Y++      F   +  L    ++R   
Sbjct: 440 GLRNAALLSIAPTGSISILAGVTSGIEPIFALTYLRHAGGQVFLAEHPLLKRYRRERG-- 497

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                               +PD       TA  + P   +   +  Q+ +DQ+ S  + 
Sbjct: 498 ------------------GEVPD-----WPTAHTVAPFQRVRLQATLQRHVDQSISSTVN 534

Query: 877 LDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSV 911
           L   + K+ ++ ++  AW  G K     R  S   V
Sbjct: 535 LPRETPKEVVENLFLTAWKEGCKGITVFREGSREEV 570


>gi|114797863|ref|YP_760266.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
 gi|114738037|gb|ABI76162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
          Length = 731

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 156/623 (25%), Positives = 267/623 (42%), Gaps = 96/623 (15%)

Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFM 352
           L  +I   +Y F    G  +++  A   RVA  +A  E    ++     F + L+ F F+
Sbjct: 7   LAAEIWEKKYRFRSDEGEDVDL-AATLSRVANAVAKAENPANRKVWRARFRDALTDFRFI 65

Query: 353 CSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L  +GT R+  L +CF + T+PD+L GIF  L+E A+  +  GG+G D++ +R  
Sbjct: 66  PAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRPS 125

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G   ++ G + F+   +     +   G+R+GA+   L   H D+E F+D ++   
Sbjct: 126 GAPVMGVGAQASGPLSFMDTWDAMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 182

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  R  + N +  + D FM  +     WTL                      ++  Q  
Sbjct: 183 -DGARFRNFNLSVLVTDEFMAALEAGRDWTL----------------------SFNGQP- 218

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                 +R + A  LW +++   ++   P + F D  N  +    +  + +SN C E  L
Sbjct: 219 ------YRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQML 272

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIE 644
                    C LGSINL A   ++ F+ D       L +   TA+R LDNVIDI+ + +E
Sbjct: 273 ----PPYGACLLGSINL-ARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLE 327

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  +     R +GLG+ G   AL      Y S +AV +++  M  I   A  AS  LA E
Sbjct: 328 QQGEEARAKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAE 387

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y  F  ++ D+     + +GL  + R  ++ +                 G+RN    
Sbjct: 388 KGPYPLFDKAILDR----PNLLGLDPDTRALISEH-----------------GLRNGCLT 426

Query: 765 AIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +IAPT T + +   VS  ++P +   Y +     D T V   + +   +  +W       
Sbjct: 427 SIAPTGTTSLLADNVSSGVEPVFAFSYSRKVRQADGTSVEEPVTDYALR--VWHRLHGDA 484

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
               D  +      P D  ++ A+A               Q+++D   S++  ++ P+  
Sbjct: 485 APPADVFVSAQTLTPQDHLRMQASA---------------QRFVD--SSISKTVNCPADI 527

Query: 884 KLDF---IYRQAWLMGLK--TTY 901
             D    +YR+ + +G K  TTY
Sbjct: 528 SFDAFKDVYREGYRLGCKGLTTY 550


>gi|89099226|ref|ZP_01172104.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89086072|gb|EAR65195.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 849

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 173/678 (25%), Positives = 285/678 (42%), Gaps = 132/678 (19%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377
           R A GLA  E  +EKR     +FY+ L S +F+ +   L+ +G  T     +   +  V 
Sbjct: 134 RNATGLAAAEATEEKRKEWFEKFYHELVSLNFIPAGRVLYGAGADTDVTYFNCYVMPFVQ 193

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 194 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 253

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDDRRRTHDMNTANW-- 484
           V QGG R+GA    L  WH D+ EF+            L +NT D+  + +      +  
Sbjct: 254 VEQGGSRRGAQMIMLTDWHPDIIEFIISKMQNPRILRFLLENTQDETIKRYASEKLKFTP 313

Query: 485 -----------------IPDL--FMKRVTQNA--------GWTLFSPDEVS--------- 508
                            IP L  F +++ ++A         +T+ +P+ ++         
Sbjct: 314 LTEQETNMYQGIINYKQIPGLGGFSEKIIKDAENKLAAGGNYTVHNPEFLTGANISVCLT 373

Query: 509 -DLHDLYGK--EFEIAY---ENYERQADR---------GEIKVFRK----------ISAV 543
            D  D   K  E+E+ +   E+Y+ +  +         G+++ + K          I A 
Sbjct: 374 KDFMDAVEKDAEYELRFPDVESYDAETMKIYNEEWHKIGDVREWEKLGHKVRTYRKIKAK 433

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
            LW  +      +  P I F D  N  +  Q  G  V ++N C E  L   S    VCNL
Sbjct: 434 ELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQPLAPYS----VCNL 489

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL  +A   N   D++KLA T+   VR+ DNVID   + +E+ KK     R +GLG+
Sbjct: 490 AAVNLAEMADKENKTVDFEKLARTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGV 549

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L      Y S +  E+ D+  E I+  A  ASVELA E+G++    G+      
Sbjct: 550 MGLHDLLIYCETEYGSEKGNELIDKVFETIAVTAYKASVELAGEKGSFPFLTGA------ 603

Query: 721 FPIDSIGLLAEVRDELAMNRT-----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                     E    L  N T      ++P D +++ +   G+RNS+ + +APT +   +
Sbjct: 604 --------TDEETSRLRQNFTEAGFMQKMPED-VRQSILEKGIRNSHLLTVAPTGSTGTM 654

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  ++P +   Y +S   G F  V + +V E   R                   N +
Sbjct: 655 VGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR-------------------NPD 695

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQA 892
             P++L +   +A E+ P    +     Q+WID   S++  ++ P G   ++++ +Y + 
Sbjct: 696 ADPENLPEWFISAMELSPEAHADVQCVIQRWID--SSISKTVNAPKGYSVEQVEGVYERL 753

Query: 893 WLMGLK--TTYYLRSRSA 908
           +  G K  T Y   SR +
Sbjct: 754 YRGGAKGGTVYVDGSRDS 771


>gi|325968165|ref|YP_004244357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707368|gb|ADY00855.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
          Length = 1312

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 189/387 (48%), Gaps = 24/387 (6%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           +LL  + ++V      K         +  Y E F  +   G++ R+    M  +   ++ 
Sbjct: 86  YLLWSMYKQVWGKDVVKAINDGRTRFEDAYREGFRAWFRTGLELRIWDSEMSAWYAQHID 145

Query: 283 NDLKY---ERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
              KY    RD    Y G++ L  RY L  ++GS  E PQ  +MR AMG+A  E +    
Sbjct: 146 ELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEAPQYLWMRTAMGVAYAELKYGGD 205

Query: 339 AV----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-------------- 380
            +     FY+L+S    M ++PTL+N+ TR  QLS+CF+  + D L              
Sbjct: 206 PITWTRRFYDLMSQLKLMPNSPTLYNAMTRLGQLSACFVVPIDDCLSRESDTNREDPECN 265

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +GI  AL+  A++ +  GG+G ++  +R  G  +  T G + G + F+K+ +     + Q
Sbjct: 266 FGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIASGPLSFMKLFDTLVDTIKQ 325

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKR+GA    L  WH D+E+F+  +     D  +  + N +  I D FM++  +     
Sbjct: 326 GGKRRGAQMGMLFWWHPDIEKFITSKSGELKD-IQLQNFNISVAIDDHFMQKALKGEDIY 384

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L +P E   L+  +G+EF   YE        G+I+++R+I+A  LW K++   +++G P 
Sbjct: 385 LVNPRECPCLYKTWGEEFIKCYEGCIEAIKAGKIRIWRRINAKELWDKIVKSAWDSGDPG 444

Query: 561 ITFKDPCNIRSPQQHVG-VVHSSNLCT 586
           +  +D  N  + ++  G V++++N C 
Sbjct: 445 LWNRDLANYINNEKIPGEVINATNPCV 471



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 170/358 (47%), Gaps = 43/358 (12%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            CNLGSINL+ +  + + D+D LA  ++ AVR LD+VID+N    ++ +K     R IGLG
Sbjct: 898  CNLGSINLVKYVYDGRIDWDSLARDVQLAVRFLDDVIDVNKLPHDRLRKRVLETRRIGLG 957

Query: 660  LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
              G    L  L + Y SP+A+ +++E   FI+  A+ AS+ELA+E+G Y ++K S W +G
Sbjct: 958  ANGLADTLIALGLKYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEG 1017

Query: 720  VFP--------------IDS----------------IGLLAEVRDELAMNRTSRLPWDEL 749
            V P              ID                 I + A +     + R  +    +L
Sbjct: 1018 VLPWTKHRERLEKFSSAIDKDAVDEYLKTLDVGYGDIKVKAIIDGATTVLRGYKASDSDL 1077

Query: 750  KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
               V TIG+RN + M+IAP  + + I GV+ SI+P +   Y+++   G     N   +  
Sbjct: 1078 SIDVSTIGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALKL 1137

Query: 810  LKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAFEIDPMWLIESASRRQKWI 867
            L Q    DEA  S ++ +         +P D  L  +  TA EI   W +       +W 
Sbjct: 1138 LMQTKALDEATRSFVEEYG-------ILPRDHPLANLLRTAHEIHWKWHVYMQVTWARWN 1190

Query: 868  DQ--AQSLNLYLDEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDGK 922
            D   ++++N+  D P  + ++  YR AWL+     T Y     +  V  + +KG + K
Sbjct: 1191 DSGVSKTINMPSDTPI-EDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAK 1247


>gi|291240499|ref|XP_002740156.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Saccoglossus kowalevskii]
          Length = 316

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 7/258 (2%)

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           KA+ SN  HR IG+G+ G   A  L+  P+ S EA+ +  +  E I + A+ AS ELA+ 
Sbjct: 61  KARNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAER 120

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y S+K   +  G  P+ S G+L    D   +  T    WD LKK + T G+RNS  +
Sbjct: 121 DGVYESYK---FGDGC-PV-SKGILQ--YDMWDVTPTDLHDWDALKKDIATHGLRNSLLL 173

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ A I G ++S++P   N+Y +  +S +F VVN  L+ +L +  LW++ M + L
Sbjct: 174 APMPTASTAQILGNNESVEPYTTNIYSRRVLSKEFQVVNHHLLKDLTEMGLWNDDMKNLL 233

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             ++GSI +I+ IPD +KK++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  K
Sbjct: 234 IANNGSIQSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGK 293

Query: 885 LDFIYRQAWLMGLKTTYY 902
           L  ++  AW  GLKT  Y
Sbjct: 294 LTSMHFFAWKQGLKTGMY 311


>gi|76818467|ref|YP_337183.1| ribonucleotide reductase, coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
 gi|76582940|gb|ABA52414.1| Ribonucleotide reductase, Coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
          Length = 871

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 62  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 116

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 117 VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 176

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 177 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 232

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 233 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 282

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 283 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 338

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 339 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 398

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA+ERGA++ F  + 
Sbjct: 399 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 458

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 459 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 498

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 499 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 548

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 549 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 600

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 601 DAWKSGLK 608


>gi|237745665|ref|ZP_04576145.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229377016|gb|EEO27107.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 957

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 164/635 (25%), Positives = 288/635 (45%), Gaps = 89/635 (14%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEF-YNLLS 347
           FA + +  ++L ++Y      S  E+ +    RVA  LA  E  K ++  A EF + + +
Sbjct: 12  FAPQEISTEVLLEKYAKGDETSAEEVME----RVACALAEVEAPKSRKKYAEEFLWAMQN 67

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGL 400
            F       +   +G +   L +CF+  V D +        GI+ AL + A   +  GG+
Sbjct: 68  GFIPAGRVSSAAGTGLQT-TLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGV 126

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA + GT   + G I ++KV + +   V   G R+GA  A L   H D+ 
Sbjct: 127 GYNFSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIL 186

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+ +++    ++ +  + N +  + D FM+ V  ++ + L    E +D         E+
Sbjct: 187 EFITVKQ----EQNQLSNFNVSVGVSDEFMRAVETDSDFELAHTAEPND---------EL 233

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             +   ++AD G+  V+ +I A  +W  ++   +    P + + D  N  +   +  V+ 
Sbjct: 234 KEKGAFKRAD-GKW-VYNRIKAREVWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIE 291

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNV 635
           ++N C E  L     +   C LGS+NL +       A   FD++ L    + AVR+LDNV
Sbjct: 292 ATNPCGEQPL----PDYGCCCLGSLNLTSFITAPFSAQPLFDFNLLTRVTKIAVRMLDNV 347

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +E+  +     R IGLG  G   AL +L I Y S +A  ++ E  + +   A 
Sbjct: 348 LTATKWPLEEQAREAAAKRRIGLGFTGLGDALIMLGIRYDSEKARILSAEIAKAMRDAAY 407

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           + S+ELA+ERG +       + +G F                    SRLP +E+K++++ 
Sbjct: 408 TGSIELAKERGGFPMLDVERYLEGGF-------------------VSRLP-EEMKEKIRK 447

Query: 756 IGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+  +IAPT TI  A     S  I+P++   Y +     D            K  
Sbjct: 448 HGIRNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPD---------GSRKNY 498

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQA 870
            + D A     + +     ++ ++PD       +A E   ID M ++ + +    +ID A
Sbjct: 499 TVEDHA----YRVYRSMNNDVSKLPD----YFVSALEISAIDHMLMVAAVA---PYIDAA 547

Query: 871 --QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
             +++N+  D P  +    +Y +AW  GLK  TTY
Sbjct: 548 ISKTVNVAEDYPY-EDFKNLYMEAWKKGLKGITTY 581


>gi|213584526|ref|ZP_03366352.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 478

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 233/508 (45%), Gaps = 71/508 (13%)

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA
Sbjct: 9   ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENA 68

Query: 498 GWTLFSPDEVSDLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVALWRKMLTMLF 554
              LFSP    D+   YGK F +IA  E Y E  AD    K +  I+A   ++ +  + F
Sbjct: 69  QMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQF 123

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNL 602
           E+G+ +I F+D  N  +P    G ++ SNLC+EI  +NS+S                CNL
Sbjct: 124 ESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNL 181

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
           GS+N +AH      D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M
Sbjct: 182 GSLN-IAHV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQM 236

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                L    I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G 
Sbjct: 237 NLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGD 296

Query: 721 FPI-----DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I
Sbjct: 297 YFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSI 356

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + + K   +G       F+ NE                      
Sbjct: 357 SYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------- 394

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
            N++   D        A++I P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 395 -NLDMYQD--------AYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 445

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            AW  G+K+ YY+R R   ++E + ++G
Sbjct: 446 YAWRKGIKSLYYIRLRQ-LALESTEIEG 472


>gi|167905562|ref|ZP_02492767.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei NCTC 13177]
 gi|254185407|ref|ZP_04891995.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
 gi|184209642|gb|EDU06685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
          Length = 844

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA+ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|53721516|ref|YP_110501.1| ribonucleotide reductase protein [Burkholderia pseudomallei K96243]
 gi|126443851|ref|YP_001061740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134283051|ref|ZP_01769753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|167741547|ref|ZP_02414321.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 14]
 gi|167818742|ref|ZP_02450422.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 91]
 gi|167827116|ref|ZP_02458587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 9]
 gi|167848614|ref|ZP_02474122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei B7210]
 gi|167913872|ref|ZP_02500963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 112]
 gi|167921786|ref|ZP_02508877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei BCC215]
 gi|217424572|ref|ZP_03456070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|226196550|ref|ZP_03792131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254187293|ref|ZP_04893807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254198951|ref|ZP_04905369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|254264773|ref|ZP_04955638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
 gi|254296714|ref|ZP_04964168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|52211930|emb|CAH37935.1| putative ribonucleotide reductase protein [Burkholderia
           pseudomallei K96243]
 gi|126223342|gb|ABN86847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134245699|gb|EBA45791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|157806658|gb|EDO83828.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|157934975|gb|EDO90645.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169657123|gb|EDS88517.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|217392496|gb|EEC32520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|225931426|gb|EEH27432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215775|gb|EET05160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
          Length = 844

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA+ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|9628064|ref|NP_042658.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
 gi|82013697|sp|Q66663|RIR1_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|695234|gb|AAC13849.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
          Length = 799

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 170/690 (24%), Positives = 290/690 (42%), Gaps = 95/690 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVY--LANDLKYERDFAFEYLGLQILYDRYFLHIN-----GS 312
           +E+GV  R L ++  D D +     N  +YER  +   L  + +YD Y L        G+
Sbjct: 71  LEKGVH-RFLWDNARDIDDLCKDFQNGPEYERLISRGMLSAKRMYDTYVLRTEEGGGEGA 129

Query: 313 RIEMPQAFFMRVAMGL--------ALKETEKEKRA------------VEFYNLLSSFHFM 352
             E     + R+A           +L++T  E                 F+ +L+S    
Sbjct: 130 VYESALQMYARMAAFFTCQCFAYPSLRKTVSEVEGGSGRMESGLDFFAYFFKILASQLVS 189

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           C+TP + ++G R   L+SCF+   PD          E+  L+     L        G+G 
Sbjct: 190 CATPVMRSAGLRQSYLASCFIMN-PD-------MSTEDKTLSAVFRDLSPLLCSKSGVGM 241

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           ++   +   + V   L++ N      N    R  +V AY+E WH  +EEFL  +    ++
Sbjct: 242 NLTNFSSGGKNVQSCLRLINSQVEFCNDKNLRPVSVAAYMELWHEQIEEFLAAK--LPEN 299

Query: 473 RRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
             R   +     +P LF +   QN  + W LFSP     L  LYG +F+   E Y R   
Sbjct: 300 PERCQSIFQGVCVPGLFFRLYEQNPDSQWHLFSPKVGGHLAGLYGDKFD---EEYARLVR 356

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
            G       + A +L   +++ + +TG P+I  KD  N     +  G  +  +NLC E+ 
Sbjct: 357 HGLYS--SSLPAKSLMFALISAIIKTGSPYILSKDAINRHHWFETQGNAISYANLCAEV- 413

Query: 590 LNSSSEETAVCNLGSINLLAHF-------------------------ANNQFDYDKLAST 624
           +    E T+ CNL ++ L A                            + +F +D L + 
Sbjct: 414 VQQPHEFTSTCNLANVCLPACLRARGEGEGAGAAGEGEGADRLSPLTPDLEFCFDTLRAA 473

Query: 625 IRTAVRVLD-NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +R AV +++ +++   C T     +     R+ G+G+ G       L   Y   E+  + 
Sbjct: 474 VRAAVYMINASILGGVCPT--PGVRVMQAERSAGIGVQGLADVFAKLGRGYMDAESALLD 531

Query: 684 DESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
               E + + A+ AS +L    GA  ++++K S   +G F  +S G+     D L + R 
Sbjct: 532 ARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSKLSRGEFHWESWGV---QYDSLFIERQ 588

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W+EL++ V   G  NS  +A+ PTA  + + G+S+S  P Y N+  K +   +   
Sbjct: 589 L---WEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFYANVSSKVSNKEEVMK 645

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIE 858
            N   +  +   D      +  LKYH    G++ ++P  L   +    TAF+  P   I 
Sbjct: 646 PNITFLERVSPSD------VPLLKYHG---GDVSKLPPPLAAKYRNFLTAFDYSPEDQIR 696

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
            A+ R  ++DQ+QS + +L E + K   ++
Sbjct: 697 RAAARSPFVDQSQSFSFFLKEANVKSASYV 726


>gi|167897188|ref|ZP_02484590.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 7894]
          Length = 844

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 267/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFAIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA+ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|91791016|ref|YP_551967.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91700896|gb|ABE47069.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 784

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 151/579 (26%), Positives = 251/579 (43%), Gaps = 88/579 (15%)

Query: 364 RHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           R   + +CF+  V D + G        I  AL+E+A   +  GG+G D++ +R +GA + 
Sbjct: 77  RVSTMINCFVQPVGDSMSGSNQDGQPGIMDALRESAETMRRGGGVGYDFSSIRPVGARVK 136

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GT+ K+ G + +++V +     V   G R+GA    +   H D+E F+D +K T D  + 
Sbjct: 137 GTDSKASGPVSYMRVFDRMCQTVESAGARRGAQMGVMRVDHPDIEMFIDAKK-TPDFSQM 195

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSP--------------DEVSDLHDLYGKEFEIA 521
             D   A+ + DL  K   Q  GW+L S               DE  +   +   +F++ 
Sbjct: 196 GLDKKDADGLLDLVRK--NQGFGWSLRSAFATLSNFNISVAVTDEFMNAV-VNDSDFDLV 252

Query: 522 YENYERQA-------DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           ++    +A       D     V+R + A+ +W K++   +    P + F D  N  +  +
Sbjct: 253 HDAEPVEACPTKVCTDGKARFVYRTVKAIEIWTKIMRNTYYGAEPGVLFIDRINQDNNLR 312

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           +  V+ ++N C E TL         C LGS NL    +N       FD+D L+  +  AV
Sbjct: 313 YCEVIKATNPCGEQTL----PPYGCCCLGSPNLTRFVSNPFTLMASFDFDGLSKVVAKAV 368

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +LD V+D     + +        R IGLG  G   A+ +L I Y S +  + A    E 
Sbjct: 369 EMLDKVLDKTHWPLPQQASEAANKRRIGLGHFGLADAMAMLGIRYDSQQGADFAAHVSEV 428

Query: 690 ISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +   A  ASV LA+  GA+  F    + ++G F                    SRLP ++
Sbjct: 429 LRDSAYMASVNLAKTLGAFPFFDAEKYLEEGTF-------------------ASRLP-EK 468

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +K  ++  G+RNS+ ++IAPT TI+   G   S  I+P +     ++ M  D +      
Sbjct: 469 IKDAIRMYGIRNSHLLSIAPTGTISMAFGDNASSGIEPIFSLRQQRNKMMADGS------ 522

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                 R +++   + D  Y    +   E   D    +  TA ++     +        +
Sbjct: 523 ------RQIFE---LEDYAYRQFKLSKGE---DAKSDVFVTAMQMTVADHLRVLGAVAPY 570

Query: 867 IDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
           ID A  +++N+  D P  +    +Y  AW MGLK  TTY
Sbjct: 571 IDSAISKTVNVPADYPF-EDFQQVYMDAWRMGLKGITTY 608


>gi|237509777|ref|ZP_04522492.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001982|gb|EEP51406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 844

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q   W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQGLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA+ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELARERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|332285600|ref|YP_004417511.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
 gi|330429553|gb|AEC20887.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
          Length = 949

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 167/603 (27%), Positives = 271/603 (44%), Gaps = 85/603 (14%)

Query: 323 RVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA  LA  E  K ++  A EF   + +  F+ +      +GT     L +CF+  V D 
Sbjct: 40  RVAEALARVEPAKLRKQYAQEFLWAMEN-GFIPAGRVNSAAGTDLQSTLINCFVQPVGDS 98

Query: 380 LY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +        GI+ AL + A   +  GG+G +++ +R  GA + GT   + G I +++V +
Sbjct: 99  ITEEVDGKPGIYTALAQAAETMRRGGGVGYNFSGIRPRGARVKGTGSSASGPISYMRVFD 158

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA  A L   H D+ EF+  ++    +R + ++ N +  + D FM+ 
Sbjct: 159 RSCETVESAGSRRGAQMAVLNVTHPDIMEFITAKQ----ERGQLNNFNVSVGVSDAFMQA 214

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +    LF   E+S  H+    E       Y R  D G + V++ + A  +W  ++  
Sbjct: 215 VETDG---LF---ELS--HEAEPTEELKGSGAYLR--DDG-LWVYKAVQAREIWDLIMQS 263

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611
            +    P + + D  N  +   +   + S+N C E  L     +   C LGS+NL A+  
Sbjct: 264 TYAAAEPGVLYMDRINQENNLAYCEKIESTNPCGEQPL----PDYGCCCLGSLNLTAYVT 319

Query: 612 ----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               A   FD++K+    + AVR+LDNV+      +++ +      R +GLG  G    L
Sbjct: 320 SPFSATAAFDFEKMKQATKLAVRMLDNVLIATKWPLDEQRLEAENKRRLGLGFTGLGDTL 379

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L + Y S +  ++A +    +   A  ASV LAQERGA             FP     
Sbjct: 380 IMLGLRYDSEQGRQLAADFARHMRDAAYEASVALAQERGA-------------FP----- 421

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785
            L +  + L      RLP DELK+ ++  G+RNS+  +IAPT TI  A     S  I+P+
Sbjct: 422 -LLQADEYLNSEFAQRLP-DELKQAIRQHGIRNSHLTSIAPTGTISLAFADNASNGIEPA 479

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y ++    D            K   + D A     + +    G+I  +PD      
Sbjct: 480 FSWFYKRTKRMAD---------GSKKDYTVEDHA----YRVYRAMGGDIGALPDAF---- 522

Query: 846 ATAFE---IDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK-- 898
            +A E   ID M ++ S +    ++D A  +++N+  D P     D +Y QAW  GLK  
Sbjct: 523 VSALEISAIDHMLMVASVA---PYVDAAISKTVNVPADYPYDDFKD-LYMQAWHKGLKGI 578

Query: 899 TTY 901
           TTY
Sbjct: 579 TTY 581


>gi|145639186|ref|ZP_01794793.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271748|gb|EDK11658.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 504

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 219/518 (42%), Gaps = 53/518 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR+           KA  H      P     ++++ 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRK-----------KAYGH----FDPPRLYDHVKKL 109

Query: 264 VKARLLHESMMDFDLVYLAND-----LKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           V+     ++++D D      D     + + RD  F Y  ++ L  +Y +   + G   E 
Sbjct: 110 VRMEKYDQALLD-DYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYES 168

Query: 317 PQAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSC 371
            Q  ++ V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC
Sbjct: 169 AQFLYLLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSC 225

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +R LG+ I G      G IPF K  
Sbjct: 226 VLIECDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYF 285

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +
Sbjct: 286 QTAVKSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQ 345

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  
Sbjct: 346 RLIKGGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSL 401

Query: 549 MLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAV 599
           ++     TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+
Sbjct: 402 LMQERASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIAL 461

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           C L + NL         + D+L      AVR LD ++D
Sbjct: 462 CTLSAFNL-----GKIENLDELEELADLAVRSLDALLD 494


>gi|126457217|ref|YP_001074685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242311219|ref|ZP_04810236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
 gi|126230985|gb|ABN94398.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242134458|gb|EES20861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
          Length = 844

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 158/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  ASVELA ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASVELALERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|329913475|ref|ZP_08275946.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545350|gb|EGF30583.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 794

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 219/487 (44%), Gaps = 57/487 (11%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP---QLSSCFLTTVPDD 379
           RVA G+A  ET  + R       L +           NS    P    L +CF+  V D 
Sbjct: 4   RVAKGIAEPETNAKNRKAWTAKFLWAQQNGWVPAGRINSAAGLPLKATLMNCFVQPVGDS 63

Query: 380 LYG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + G       I+ A+ + A   +  GG+G +++ +R  GA + GTN ++ G I +++V +
Sbjct: 64  VTGFSDGKPGIYTAIAQAAETMRRGGGVGYNFSEIRPEGALVKGTNSRASGPISYMRVFD 123

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H DV  F+  +++         + N +  + D FM+ 
Sbjct: 124 SSCSTVESAGARRGAQMGVLNCDHPDVLNFITAKRDG-----SLSNFNLSVGVTDAFMQA 178

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +    L        +H        +    ++R  D G + V+++++A  +W  M+  
Sbjct: 179 VASSGTIQL--------IHKAAPGNELMQAGAFQR--DDG-MWVYKEVAAQEIWGLMMQS 227

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P I + D  N  +   +   + ++N C E  L     +   C+LGS+NL     
Sbjct: 228 TYDFAEPGILYIDRMNQENNLYYCEKIEATNPCAEQPL----PDYGCCDLGSVNLTLCVT 283

Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +       FDY K +  ++  +R LDNV+D +   +E+ +      R IGLG +G  SA+
Sbjct: 284 DPFSERASFDYAKFSQLVQIGIRFLDNVLDASQWPLEEQRLEAMNKRRIGLGFLGLGSAM 343

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L I Y S      A +  E +   A  ASV+LA+E+GA+  F  + +  G F      
Sbjct: 344 VMLGIRYDSDAGRTFAAKVSEEMRDAAYRASVDLAKEKGAFPLFDAAKYLAGAF------ 397

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPS 785
                         SRLP D +++ + T G+RNS+ ++IAPT TI  + G   S  I+P+
Sbjct: 398 -------------VSRLPAD-IREGIATFGIRNSHLLSIAPTGTITLVFGDNASNGIEPA 443

Query: 786 YQNLYVK 792
           +   Y +
Sbjct: 444 FSWNYTR 450


>gi|296134979|ref|YP_003642221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
 gi|295795101|gb|ADG29891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
          Length = 811

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 153/594 (25%), Positives = 263/594 (44%), Gaps = 78/594 (13%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT----TVP 377
           RVA  LA++E +  +    F   L+   F+ +   +  +GT     L +CF+     +V 
Sbjct: 29  RVARALAVEEADPARSEALFRQALAD-GFVPAGRIMSAAGTDIQATLINCFVQPVGDSVS 87

Query: 378 DDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           DD  G   I+ AL + A   +  GG+G D++ +R  GAH+ GT+ ++ G + F++V + +
Sbjct: 88  DDKDGKPSIYKALAQAAETMRRGGGVGYDFSRIRPAGAHVGGTHSRASGPLSFMRVFDAS 147

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L   H D+E F+  +     D+    + N +  +   FM+ V 
Sbjct: 148 CETVESAGSRRGAQMGVLRADHPDIEAFIHAK-----DQGAFKNFNLSVGVSAAFMQAVE 202

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +A        ++  +H     + ++A    +R AD   + V+R + A  LW +++   +
Sbjct: 203 NDA--------QIDLVHKARPGDDQLAAGARQR-AD--GLWVYRSVRARDLWDQIMQSTY 251

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           +   P I F D  N  +   +     ++N C E  L     +   C LGSINL   F  +
Sbjct: 252 DHAEPGILFLDTANADNNLYYCETFEATNPCAEEFL----PDYGCCCLGSINL-TRFVRD 306

Query: 615 ------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD +   +  R AVR+LDNV+D+    + +        R IGLG +G   A  
Sbjct: 307 PFTPQARFDAEGFQAVTRVAVRMLDNVLDVTYWPLVEQHNEAQNKRRIGLGFLGLGDACV 366

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y S +A   A +    +   A +ASV+LA+E+GA+  F    +    F       
Sbjct: 367 MLGLRYDSDDARRFAADMARTLRDAAYAASVDLAKEKGAFPLFDAKKYLDSGF------- 419

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSY 786
                         RLP + L+  +   G+RNS+ +A+APT TI  A     S  I+P++
Sbjct: 420 ------------AKRLP-EALRADIAAHGIRNSHLLAVAPTGTISLAFADNASNGIEPAF 466

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             +Y +     D         N  ++ ++ D A     + +     ++  +P        
Sbjct: 467 SWVYTRKKRMAD---------NTTREYEVADHAW----RLYRSMGRDMSALP----PAFV 509

Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           TA E+     ++     Q +ID   ++++N+  D P     D +Y QAW  GLK
Sbjct: 510 TALEMSAADHMKMLQVVQPFIDTSISKTVNVPADYPYDDFKD-LYLQAWKAGLK 562


>gi|167722571|ref|ZP_02405807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei DM98]
          Length = 844

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 157/608 (25%), Positives = 266/608 (43%), Gaps = 90/608 (14%)

Query: 320 FFMRVAMGLALKET-----EKEKRAVEFY--NLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA G+A  E      E E R VE      L +   M +  +   +      L +CF
Sbjct: 35  IYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGAGRIMSAAGSPIAA-----TLINCF 89

Query: 373 LTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D         L GI+ AL + A   +  GG+G +++ +R  GA++H T   + G 
Sbjct: 90  VQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  
Sbjct: 150 CSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVA 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM  V Q+  W L    E S      G           R+ D G + V+ +  A A
Sbjct: 206 VTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL---------RRRDDG-MWVYAERRARA 255

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   ++   P + F    N  +  + +  + ++N C E  L +       CNLG 
Sbjct: 256 IWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPCGEQPLPA----YGCCNLGP 311

Query: 605 INL----LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +NL    +  FA      + FD+  LA   RT VR LD+V+D+    + + +      R 
Sbjct: 312 LNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDVLDVTLWPLPEQRHEAQQKRR 371

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G  G    L +L + Y S +  + A      +   A  AS ELA+ERGA++ F  + 
Sbjct: 372 IGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAYRASAELARERGAFALFDANR 431

Query: 716 W-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           + ++G F                    SRLP D +++ ++  G+RNS+ ++IAPT T+  
Sbjct: 432 YLEEGTF-------------------ASRLPED-IREAIRRDGIRNSHLLSIAPTGTVSL 471

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P++   Y ++ +  D +   +F V +   R L+ E          G +G
Sbjct: 472 AFADNASNGIEPAFSWTYQRTKIMADGS-RQTFAVEDYAYR-LYREL--------GGDVG 521

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L     +A ++     +   +  Q +ID   ++++N+  D P     + +Y 
Sbjct: 522 A-------LPACFVSALQMSAHDHLAMMAAVQPYIDTSISKTVNVPADYPF-DDFESLYF 573

Query: 891 QAWLMGLK 898
            AW  GLK
Sbjct: 574 DAWKSGLK 581


>gi|213022042|ref|ZP_03336489.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 395

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 182/369 (49%), Gaps = 29/369 (7%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           + SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 1   MVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 60

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 61  MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 120

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENY-ERQADRGEIKVFRKISAVA 544
           +  +   +NA   LFSP    D+   YGK F +IA  E Y E  AD    K +  I+A  
Sbjct: 121 ITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARD 175

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-------- 595
            ++ +  + FE+G+ +I F+D  N  +P    G ++ SNLC+EI  +NS+S         
Sbjct: 176 FFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYT 233

Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651
                  CNLGS+N +AH      D   +  T+ TA+R L  V D+ +  ++      N 
Sbjct: 234 HIGHDISCNLGSLN-IAHV----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNA 288

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
              AIGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ 
Sbjct: 289 ASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAG 348

Query: 711 FKGSLWDQG 719
           F  S +  G
Sbjct: 349 FAQSRYASG 357


>gi|51518028|ref|YP_067953.1| BORF2 [Macacine herpesvirus 4]
 gi|18025479|gb|AAK95423.1| BORF2 [Macacine herpesvirus 4]
          Length = 822

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 203/785 (25%), Positives = 327/785 (41%), Gaps = 115/785 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L T LI   +     +P  A V A  LL +L+ E +T         T  E   ++ +
Sbjct: 6   ERELLTKLIDELKVKANVDPE-ADVLAGRLLHRLKAESVTR--------TVAEYMEVFSD 56

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSR 313
            F  Y EE  +A   H+  ++  +   A    YER  +  YL     YD Y ++  NG +
Sbjct: 57  KF--YDEEFFQA---HQDELEARVSAFAQSPAYERIVSAGYLSALRYYDTYLYVGRNGRQ 111

Query: 314 IEMPQAFFMRVA----------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTP 356
             +P  F+MR+A           GL      A  E E +    ++Y   L+S    CSTP
Sbjct: 112 ESVPH-FYMRLAGFCASTTCLYTGLRDALLRARPEIETDMEVFDYYFEHLTSQTVCCSTP 170

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            +  +G  +  L+SC LTT      G+    +    L +       +   V GLG   +G
Sbjct: 171 FMRFAGVENSTLASCILTTP-----GLSSEFEVTQALHRPLDRYLYERAGV-GLGVTEYG 224

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +GK   ++  +++ N      N   KR  +V AY+E WH  + +FL+ +    ++  R 
Sbjct: 225 KDGKHISLL--MRMINSHVEYHNYLCKRPVSVAAYMEPWHSQIFKFLETK--VPENHERC 280

Query: 477 HDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
             + T  ++P+LF K  R    + W LF P    +L  LYG+EFE     Y R    G  
Sbjct: 281 PGIFTGLFVPELFFKLFRDEPWSDWYLFEPQNAGNLEKLYGEEFE---REYYRLVTEG-- 335

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSS 593
           K   ++S  +L   ++    + G P+I  K+ CN    +   G  ++S+NLC E+ L  S
Sbjct: 336 KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNSANLCAEV-LQPS 394

Query: 594 SEETAVCNLGSINL-----------LAHFANNQFD-----YDKLASTIRTAVRVLDN--- 634
            E  A CNL +I L            A  A+ Q D       +L+ T+     + D    
Sbjct: 395 RETVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLGLPRLSVTMPGEGAIGDGFSL 454

Query: 635 ----------VIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAVEIA 683
                        + C  ++ +   +    A +GLG+ G       L   Y  P +  + 
Sbjct: 455 ARLRDATQCATFVVACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPSSRSLN 514

Query: 684 DESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAMNRT 741
            E  E + F A+  S  +    R  +  FK S +  G F   D  G    +  ++     
Sbjct: 515 KEIFEHMYFTALCTSNLIGLHTRKTFPGFKRSKYAGGWFHWHDWAGTGLSIPKDM----- 569

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +   
Sbjct: 570 ----WARLSERIVRDGLFNSQFVALMPTSGCAQLTGCSDAFYPFYANASTKVTNKEEALR 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIE 858
            N         R  W    + D++  +   G I R+P+ LK+ +    TAF+ +   L++
Sbjct: 626 PN---------RAFWRHVRMDDMEAVNLVGGRISRLPERLKRRYLRFQTAFDYNQEDLMQ 676

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSVEKS 914
            +  R  ++DQ+QS +L+L E    +   L  +  + + +GLKT  YY R      +EKS
Sbjct: 677 MSRDRAPFVDQSQSHSLFLREEHAARASTLANLLVRGYELGLKTIMYYCR------IEKS 730

Query: 915 TLKGV 919
              GV
Sbjct: 731 ADLGV 735


>gi|297565747|ref|YP_003684719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
 gi|296850196|gb|ADH63211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
          Length = 1014

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 165/631 (26%), Positives = 274/631 (43%), Gaps = 105/631 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428
           VPDD+ GI    ++   +A        D++ +R  G  I G+ G S G + FL       
Sbjct: 214 VPDDMGGIIDTARDAVAMAGKGQEPHVDFSLLRPEGTPIKGSGGTSSGPVSFLLEIFDNF 273

Query: 429 ------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467
                              V +     V QGG R+GA  A L   H D+ +FL   DL +
Sbjct: 274 LEWGNLGAEKSGPVATLRYVYSPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 333

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYEN 524
              +    T   N +  + + F   +  +  W +  P EV   +  Y   G+      E 
Sbjct: 334 EAAEGDIST--FNISILVTEAFWNTLQADGLWAV-EPAEVPGKYYPYLVQGEYTGALPEL 390

Query: 525 YERQADRGE-IKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VV 579
            +R+ D    I V+  K+ A  LW ++    + TG P + F D  N  S  +H+G    +
Sbjct: 391 PDREVDGARAIPVYEGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKHLGERYRI 450

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDI 638
            ++N C EI L         C+LG+INL A+   ++ FDY    + +RT +R LDNV+D+
Sbjct: 451 RATNPCGEIPLTVGEP----CDLGAINLAAYVREDKTFDYATFRADVRTCIRFLDNVLDV 506

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +E  + ++ + R +GLG+MG   AL  + +PY+S E  +   + M  +   AI AS
Sbjct: 507 NVFALEDNRIASQSLRRLGLGVMGLADALIKMGLPYSSEEGRQAVAKIMNAMREEAILAS 566

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             L +ERG             VFPI +                 + P  E++ R      
Sbjct: 567 ERLGEERG-------------VFPIYA-------------QHPEKFP--EIRPR------ 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNEL------- 810
           RN   + +APT T + + GVS  I+P + + ++   + G +  +++   V ++       
Sbjct: 593 RNVAVLTVAPTGTTSMLMGVSSGIEPMF-SPFMWRRIGGQYKALLHPLFVEQMEKYPPTP 651

Query: 811 --KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             ++   WD + +I  ++ H GS+  IE IP +++ +   A ++ P+  +      Q+  
Sbjct: 652 PFEKEGAWDWDKLIEAIQAHHGSVRGIEGIPTEIQAVFEGAHDVPPLDHVRMQGVVQRAF 711

Query: 868 D----QAQSLNLYLDEPSGKK---LDFIYRQAWLMGLK--TTYYLRSR--SATSVEKSTL 916
           D     A SL+  ++ P+      ++  Y +A+L G K  T Y   SR     SV KS  
Sbjct: 712 DAFGLAANSLSKTINLPNQATVADVEAAYTEAYLTGCKGITVYRDGSRDLQVLSVSKSEK 771

Query: 917 KGVDGKLNAV--P--VTDPNSSTHSLGIPSS 943
           K  +   + V  P  +  P  +T   G PS+
Sbjct: 772 KETNESTHTVVQPALLEPPTPATAYAGTPST 802



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 33/175 (18%)

Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             F RVA  +A  E + E RA    EF+ L++S  F      L  +GTRH  + +CF+  
Sbjct: 30  GMFRRVADWVAGAE-KPEARAYWSEEFFRLMASKRFCPGGRVLAGAGTRHGNVLNCFVQG 88

Query: 376 V----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
                P    G+    ++ A++ K  GG G +  P        HG  GK+ G        
Sbjct: 89  ATENDPSSFNGVLEVAKKLALVTKVGGGNGVNLDPY----PPRHGGAGKAAGP------- 137

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD--LRKNTGDDRRRTHDMNTANW 484
                      +R     AYL   H DV++F+   +R     D  +   +   NW
Sbjct: 138 -----------RRTVRGFAYLRADHPDVQDFIQGMMRPPINPDGEK-EPITVRNW 180


>gi|258544276|ref|ZP_05704510.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258520514|gb|EEV89373.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 555

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 160/578 (27%), Positives = 254/578 (43%), Gaps = 100/578 (17%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  F++ ++  ++  S+P   N G       SCF + + D +Y I     E  M++K  G
Sbjct: 54  AERFHHYMARGYYSLSSPIWSNFGLSRGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGG 113

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG         +ID
Sbjct: 114 GTSAYFGAIRPRGSDI-SNNGKSDGSFNFSKLFDTIIDVISQGTSRKGQFAG-----YID 167

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           ++         GD           N I  ++                        YG   
Sbjct: 168 IDH--------GDIDEWLDIHTEGNPIQLMY------------------------YGVCI 195

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
             A+    +  D  + +V         W K+L    ETG P++ FKD  N   P  +   
Sbjct: 196 SNAWLESMKAGDPEKRRV---------WAKVLQRKAETGIPYLFFKDNANAGRPDVYKDR 246

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              V++SNLCTEI L +S EE+ VC L S+NLL        D  +L +    AV  +   
Sbjct: 247 NMTVYASNLCTEIMLPASDEESFVCCLSSMNLLYFDEWKHTDAPELLTQFLDAV--MSEF 304

Query: 636 IDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           I+ +     +++A +    HRA+GLG++G+ S L          +A  IA     F SF 
Sbjct: 305 IEKSAEIPFLDRAHRFAKRHRALGLGVLGWHSYL----------QANRIA-----FDSFA 349

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+  + E+ Q                        LL E     +    ++    EL   +
Sbjct: 350 AMQKNNEIFQ------------------------LLQEKTLAASKALAAKFGEPEL---L 382

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           K  G RN+  ++IAPT + + I G VS S++P   N +VK       T  N FLV  LK+
Sbjct: 383 KGYGRRNTTLLSIAPTKSSSFILGSVSPSVEPFKSNYHVKDLAKIKTTYKNPFLVELLKE 442

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + + +E     +  +DGS+ ++  + D+ K+I  T  EI  + +I+ A++RQK+IDQ QS
Sbjct: 443 KGIDNEKTWESILLNDGSVQHLAALNDEEKEIFKTFAEISQLAVIQQAAQRQKYIDQGQS 502

Query: 873 LNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +N+ +  D P+ + ++ +Y  A  +GLK+ YY  S SA
Sbjct: 503 INVMIHPDTPT-RDINQLYLTAAELGLKSIYYQHSMSA 539


>gi|57641671|ref|YP_184149.1| ribonucleotide-diphosphate reductase subunit alpha [Thermococcus
            kodakarensis KOD1]
 gi|57159995|dbj|BAD85925.1| ribonucleoside-diphosphate reductase [Thermococcus kodakarensis KOD1]
          Length = 1746

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 166/338 (49%), Gaps = 22/338 (6%)

Query: 596  ETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            E   CNL SINL A F          FD+D+ A  I+   + LDN ID+N   + +  ++
Sbjct: 1304 EYESCNLASINL-AKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDRN 1362

Query: 650  NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
                R IG+G+MG   AL  L IPY S E  +   ++ E+++F+A   SVE A+ERG + 
Sbjct: 1363 TKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEYLTFYAYKRSVEAAKERGPFP 1422

Query: 710  SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             ++ + +  G  P++                   LPWDEL + +K  G+RN       PT
Sbjct: 1423 LYEKTRYKDGELPVEG----------FYHREIWNLPWDELVEEIKKYGVRNGMVTTCPPT 1472

Query: 770  ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
             +++ I   S  I+P +  +Y KS   G+F  V+     ELK+R LW + ++  +  + G
Sbjct: 1473 GSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLWSDEILKKISDNYG 1532

Query: 830  SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            S+  +E IP+D++++  TA +I  +  I + +  Q W+  + S  + + ++ + + +   
Sbjct: 1533 SVQGLEEIPEDMQRVFVTAMDIHWLDHILAQANIQLWLTDSASKTINMPNDATVEDVKAA 1592

Query: 889  YRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGK 922
            Y  A+ +G K     R  S +    SVE    K V  K
Sbjct: 1593 YLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAK 1630



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           EN M+  ++ GL  +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA 
Sbjct: 747 ENGMVFVHNTGL--NFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804

Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
              LE WH D+E+F+  + KNTG +     +++   W  + F + + +   + L +P
Sbjct: 805 MGILEVWHPDIEKFIHAKEKNTGTNVLSNFNISVGLW--EDFWEALKEGKRYPLINP 859



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E++ L++  +FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ K  GG
Sbjct: 243 EYFRLMTGQYFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKAGGG 301



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V        +R + ++ N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDKERIRWAIQRAMLEV-------GVRDEKLL-NRVVRRVVRRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I +IE+IQD VE  LM++G   + + Y+LYR++++++R
Sbjct: 57  GQIPNIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIR 96


>gi|15615373|ref|NP_243676.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10175431|dbj|BAB06529.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           halodurans C-125]
          Length = 852

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 182/690 (26%), Positives = 280/690 (40%), Gaps = 133/690 (19%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRH 365
           IE P   F      R A GLA  ET +EKR      FY  L + +F+ +   L+ +G + 
Sbjct: 122 IEKPLEIFYEQIAKRNATGLAAVETTEEKRQQSFERFYEELVNMNFVPAGRVLYGAGAKT 181

Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +C++   V D   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 182 DVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 241

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472
            + +L         V QGG R+GA    L  WH DV EF+            L +NT DD
Sbjct: 242 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDVLEFIISKMQNPRILRYLLENTDDD 301

Query: 473 --RRRTHD---------------MNTANW--IPDL--FMKRVTQNA--------GWTLFS 503
             R+   D                   N+  IP +  F  +V + A         +T+ +
Sbjct: 302 QIRKLVKDKLKFTPLSQLEEAMYQGIVNYKSIPGMGGFDAKVIKEAEEKLRIGGTYTVNN 361

Query: 504 PD----------------EVSDLHDLYGKEFEIAYENYERQ------------------A 529
           PD                E  D  D Y   F    ENY  +                   
Sbjct: 362 PDFLTGANISVCLTKEFMEAVDNDDWYALRFP-DVENYTEEEMDIYNREWSNVGDVREWE 420

Query: 530 DRG-EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTE 587
           +RG  +K +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E
Sbjct: 421 ERGFPVKTYRMIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGE 480

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
             L   S    VCNL +IN LA  AN Q    D+ KL  T+   VR+ DNVID   + +E
Sbjct: 481 QPLAPYS----VCNLAAIN-LAEMANKQEKTVDFKKLKQTVEVGVRMQDNVIDATPYFLE 535

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  K     R +GLG+MG    L      Y S E  ++ D+  E I+  A   S+ELA+E
Sbjct: 536 ENTKQAKGERRVGLGVMGLHDLLIYTETVYGSEEGNKLVDQIFETIATTAYRTSIELAKE 595

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           +G++    G   ++            ++R   +      ++P D +++ V   G+RNS+ 
Sbjct: 596 KGSFPFLVGQTDEE----------TKQLRQRFIGTGYMKKMPED-IRQGVLEYGIRNSHL 644

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           + +APT +   + GVS  ++P +   Y +S   G F  V + +V E              
Sbjct: 645 LTVAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEIVQEY------------- 691

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG- 882
           L+ H       E   + L +   +  E+ P    +     Q+W+D   SL+  ++ P G 
Sbjct: 692 LRAHP------EADENHLPEWFISTMELAPEAHADVQCIIQRWVD--SSLSKTVNAPRGY 743

Query: 883 --KKLDFIYRQAWLMGLK--TTYYLRSRSA 908
             +++  +Y + +  G K  T Y   SR A
Sbjct: 744 TVEQVQAVYERLYRGGAKGGTVYVDGSRDA 773


>gi|14590272|ref|NP_142338.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus
            horikoshii OT3]
 gi|3256754|dbj|BAA29437.1| 1291aa long hypothetical ribonucleoside-diphosphate reductase
            [Pyrococcus horikoshii OT3]
          Length = 1291

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 26/291 (8%)

Query: 596  ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            E   CNL SINL      ++     FD+D+ A  I+   + LDN ID+N   + +   + 
Sbjct: 860  EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVTKYLDNAIDVNKFPLPEIDHNT 919

Query: 651  HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
               R IG+G+MG   AL  L IPY S E  +   +  E+++F+A   SVE A+ RG +  
Sbjct: 920  KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKRRGTFPL 979

Query: 711  FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            ++ + + +G  P++                   LPWD+L + +K  G+RN+      PT 
Sbjct: 980  YEKTEYPKGKLPVEG----------FYHPEIWNLPWDKLVEEIKKYGLRNAMVTTCPPTG 1029

Query: 771  TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            +++ I   S  I+P Y  +Y KS   G+F  V+     ELK+R L+ E ++  +  + GS
Sbjct: 1030 SVSMIADTSSGIEPIYALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGS 1089

Query: 831  IGNIERIPDDLKKIHATAFEID-----------PMWLIESASRRQKWIDQA 870
            I  +E IP+D+K++  TA +I             MWL +SAS+    I++A
Sbjct: 1090 IQGLEEIPEDMKRVFVTALDIHWLDHLLAQASIQMWLTDSASKTINMINEA 1140



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 32/254 (12%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I  A  + A++ K
Sbjct: 245 EKEIDEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVALIQK 304

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE W
Sbjct: 305 AGGGTGINFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIW 364

Query: 456 HIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D+E+F+  + KN G +     +++   W  + F++ + +   + L +P          
Sbjct: 365 HPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFLEALKEGKKYPLINP---------- 412

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                            GE  V R++   +L+ ++  M +    P + F D  N R+  +
Sbjct: 413 ---------------RTGE--VVREVDPKSLFEELAYMAWAKADPGVIFFDIINRRNVLK 455

Query: 575 HV--GVVHSSNLCT 586
               G + ++N C 
Sbjct: 456 EAKGGPIRATNPCV 469



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++K +  Q +  L      
Sbjct: 12  KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDEKKLDEVVKAIV-QRINELYDGK-- 65

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R
Sbjct: 66  --IPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 103


>gi|332800125|ref|YP_004461624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
 gi|332697860|gb|AEE92317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
          Length = 1225

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 221/497 (44%), Gaps = 79/497 (15%)

Query: 444  RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
            R+GA    L   H D+ +F+  +KN     +   + N +  I D FM+ + ++  + L  
Sbjct: 621  RRGANMGILRVDHPDILDFIQCKKND----KEITNFNISVAITDKFMEALKEDGNYDLID 676

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            P                              K   K+ A  ++  ++ M +  G P I F
Sbjct: 677  PHTK---------------------------KPTGKLRAREVFDLIVDMAWNNGEPGIVF 709

Query: 564  KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYD 619
             D  N  +P   +G + S+N C E  L         CNLGSINL          N  DY+
Sbjct: 710  IDRMNEDNPTPEIGDIESTNPCGEQPLLPYES----CNLGSINLAKFIKKSGNKNTIDYE 765

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             L  T+  AVR LD+VID+N + +++ ++    +R IGLG+MGF   L  L IPY S EA
Sbjct: 766  SLKETVHLAVRFLDDVIDVNLYPLKEIEEMTKANRKIGLGVMGFADMLIELGIPYNSDEA 825

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            V+ A+  M FI   + +AS ELA+ERG + +++ S++ +                     
Sbjct: 826  VKTAEAIMSFIDSESKNASCELAKERGVFPNWEKSIYKE--------------------- 864

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                          K + +RN+    IAPT TI+ I GVS  I+P +   + +  M    
Sbjct: 865  --------------KGMRIRNATTTTIAPTGTISIIAGVSSGIEPIFALAFERHVMDNQR 910

Query: 800  TV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V V+      LK++ L+ E ++  +    G++  I+ +P ++K++  TA +I P W I+
Sbjct: 911  LVEVHPIFKQVLKEQGLYSEELMQKV-VTQGTLQGIDELPKEIKRVFVTAHDIKPEWHIK 969

Query: 859  SASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
              +  QK+ D A S  + + +  + + +  +Y  A+ +G K  T Y   SR    + K T
Sbjct: 970  MQAAFQKYTDNAVSKTVNFPNSATREDVKTVYMMAYNLGCKGVTIYRDGSRQEQVLNKGT 1029

Query: 916  LKGVDGKLNAVPVTDPN 932
             K    +    P   P+
Sbjct: 1030 KKERPARYKIKPRPRPS 1046



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVEFYNLLSSFHFMC 353
           +L  RY     +G  IE P+    RV+  +A  E      + +  A +FY+++S   F+ 
Sbjct: 15  VLEKRYLAKDSSGKVIETPETLIERVSNAIAKAELKYVQDKSDDWAKKFYDMISELKFLP 74

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++PTL N+G    QLS+CF+  V D + GIF +++ +A++ K  GG G  ++ +R  GA 
Sbjct: 75  NSPTLMNAGRELGQLSACFVLPVEDSMEGIFDSIKSSALIHKSGGGTGFSFSRLRPKGAM 134

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           +  T G + G I F+KV N    AV QGG
Sbjct: 135 VKSTGGVASGPISFMKVFNAATEAVKQGG 163


>gi|310831444|ref|YP_003970087.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
 gi|309386628|gb|ADO67488.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
          Length = 1257

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 69/371 (18%)

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G    L LL +PYA
Sbjct: 880  YDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRVPYA 939

Query: 676  SPEAVEIADESMEFISFHAISA-------------------------------------- 697
            S  A++I ++    I   A++A                                      
Sbjct: 940  SKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDNFEC 999

Query: 698  ---------------SVEL--AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                           S EL   Q  GAYS+F+GS + +G        L   + +   +N 
Sbjct: 1000 YPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEG-------KLQYHLWNRTPINI 1052

Query: 741  TSRL---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            ++ +    WD L   +K  G RNS   A+ PTA+ + + G  +S +P   N+Y +  ++G
Sbjct: 1053 STLIEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 1112

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            +F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T++E+   ++I
Sbjct: 1113 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 1171

Query: 858  ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST- 915
            +  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+ + +  K T 
Sbjct: 1172 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 1231

Query: 916  -LKGVDGKLNA 925
             L     K+N+
Sbjct: 1232 LLNNSQNKINS 1242



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+  G+RKG+   YLE  H D+ +FL+LRKNTG +  R  D+  A W+ DLFM +V  N 
Sbjct: 627 VHNSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNN 686

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W LF PD+   L+D+YG E+E  Y  Y       E K  +KI A  LW  ++T  FETG
Sbjct: 687 DWYLFCPDKAPGLNDVYGDEYETLYWKY-----VSEEKYNKKIKARKLWEAIMTAQFETG 741

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            P++ +KD  N +S Q+++G++ SSNLC EI   S S ETA CNL SI L
Sbjct: 742 SPYMLYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIAL 791



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 19/260 (7%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++ +T  ++Y G++  +L+    +    +     +YA +  R  +  L +E + T  +K 
Sbjct: 54  IVKKTITSIYPGITTKELDNQSAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEK- 112

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +  +  +      Y   +IE   K R     ++D           Y RD++F++ G++ 
Sbjct: 113 MELINDNLHI----YDSEWIEFIKKHRNKLNKIID-----------YNRDYSFDFFGIKT 157

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           +   Y   ++G  IE PQ  FMRVA   +L      ++ ++ YNL+S  +F  ++PTLFN
Sbjct: 158 MERTYITKLDGHLIERPQDVFMRVA---SLVHCGDLQKTIDSYNLMSKKYFTHASPTLFN 214

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G +   L SCFL    D + GI     + A ++K+ GG+G   + VR  G+ I  TNG 
Sbjct: 215 AGNKKGNLVSCFLLGTEDSMTGISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGH 274

Query: 421 SQGVIPFLKVANDTAVAVNQ 440
           S G++P L+V N     VNQ
Sbjct: 275 SDGIVPMLQVYNSICRYVNQ 294


>gi|328951135|ref|YP_004368470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451459|gb|AEB12360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
          Length = 955

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 162/589 (27%), Positives = 260/589 (44%), Gaps = 100/589 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428
           VPDD+ GI  +  +    AK       D++ +R  GA I G+ G S G + FL       
Sbjct: 207 VPDDMGGIIRSAAQAVAQAKEGYEPHVDFSQLRPEGAPIKGSGGTSSGPVSFLLEIFDNF 266

Query: 429 -KVANDTAVA-----------------VNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467
            + AN  A A                 V QGG R+GA  A L   H D+ +FL   DL +
Sbjct: 267 LEWANLGAEAAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 326

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY----- 522
              +    T   N +  + D F K +  +A W + +P EV   +  Y    E  Y     
Sbjct: 327 EAAEGDIST--FNISILVTDTFWKALEADALWPV-TPVEVPGKY--YPYPLEEPYTGTLP 381

Query: 523 ENYERQADRGE-IKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
           E  +R+AD    I ++  K+ A  LW ++    + TG P + F D  N  S  + +G   
Sbjct: 382 ELPDREADGARAIPLYDGKVPAKWLWHEIAWHAWATGEPGLIFIDRVNDLSALKGLGERY 441

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + S+N C EI L         C+LG++NL A+     FD++     +R AVR LDNV+D
Sbjct: 442 RIRSTNPCGEIPLTVGEP----CDLGAMNLAAYVREGAFDFEAFRRDVRIAVRFLDNVLD 497

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  + ++   R +GLG+MG   AL  + +PY S  A E   E M  +   AI A
Sbjct: 498 VNKFALEDNRAASQKLRRLGLGVMGLADALIKMGLPYDSEAAREQVYEIMSVLREEAIRA 557

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA+ERG             VFP+ +        +E A        +++L  R +   
Sbjct: 558 SEALAEERG-------------VFPLYA--------EEQAY-------FEKLGIRPR--- 586

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL------- 810
            RN   + +APT T + + GVS  I+P Y + +V   +  ++  +   L  EL       
Sbjct: 587 -RNVALLTVAPTGTTSMLMGVSSGIEPVY-SPFVWRRIGSEYKPLLHPLFQELMAQFPPH 644

Query: 811 ---KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
               +   WD + +I  ++ + GS+  +E IP+ ++++   A ++ P+  +      Q+ 
Sbjct: 645 PEYAKDGGWDWDKLIEAIQENHGSVEGLEMIPEAIRRVFRCAHDVAPLDHVRMQGVVQRA 704

Query: 867 IDQ--------AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            D         ++++NL  +E S   ++  Y +A+  G K     R  S
Sbjct: 705 FDAEGYAGNSLSKTINL-PNEASVADVEAAYTEAYRTGCKGITVYRDGS 752



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 40/176 (22%)

Query: 319 AFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             F RVA  +AL  KE E+E+ A  FY L+++  F      L  +GT H  + +CF+   
Sbjct: 28  GMFRRVANWVALPEKEAERERWAQRFYELMATKRFCPGGRVLAGAGTAHGNVLNCFVQGA 87

Query: 377 ----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
               P    GI    ++ A++ K  GG G +  P    GA                    
Sbjct: 88  TQHPPASFEGIMEVAEKLALVTKVGGGNGVNLDPYVSRGAT------------------- 128

Query: 433 DTAVAVNQGGKRKGAV--CAYLETWHIDVEEFLD--LRKNTGDDRRRTHDMNTANW 484
                     KR G V   AYL   H DVE+F+   +R  T  D  +   +   NW
Sbjct: 129 ----------KRTGTVRGWAYLRADHPDVEDFIKGLMRPPTNPDGDK-EQITVRNW 173


>gi|18976812|ref|NP_578169.1| ribonucleotide-diphosphate reductase subunit alpha [Pyrococcus
            furiosus DSM 3638]
 gi|1688292|gb|AAB36947.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
 gi|18892410|gb|AAL80564.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
          Length = 1740

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 26/291 (8%)

Query: 596  ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            E   CNL SINL      ++     FD+D+ A  I+   + LDN ID+N   + +   + 
Sbjct: 1304 EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEIDYNT 1363

Query: 651  HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
               R IG+G+MG   AL  L IPY S E  +   +  E+++F+A   SVE A++RG +  
Sbjct: 1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPL 1423

Query: 711  FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +  + + +G  P++                   LPWD+L + +K  G+RN+      PT 
Sbjct: 1424 YDKTEYPEGKLPVEG----------FYHPEIWNLPWDKLVEEIKKYGLRNAMVTTCPPTG 1473

Query: 771  TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            +++ I   S  I+P Y  +Y KS   G+F  V+     ELK+R L+ E ++  +  + GS
Sbjct: 1474 SVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDPVFEEELKKRGLYSEELLKKISDNYGS 1533

Query: 831  IGNIERIPDDLKKIHATAFEID-----------PMWLIESASRRQKWIDQA 870
            +  +E IP+D++++  TA +I             MWL +SAS+    I++A
Sbjct: 1534 VQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQMWLTDSASKTINMINEA 1584



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++K++  Q +  L      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV---GIRDEKKLDEVVKSIV-QRINELY----D 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIR 96



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 34/201 (16%)

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           EN M+  ++ GL  +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA 
Sbjct: 747 ENGMIFVHNTGL--NFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGAN 804

Query: 449 CAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              LE WH D+E+F+  + KN G +     +++   W  + F + + +   + L +P   
Sbjct: 805 MGILEIWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLINP--- 859

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                                   GE  V +++    L+ ++  M +    P + F D  
Sbjct: 860 ----------------------RTGE--VVKEVDPKTLFEELAYMAWAKADPGVIFFDVI 895

Query: 568 NIRSPQQHV--GVVHSSNLCT 586
           N R+  +    G + ++N C 
Sbjct: 896 NRRNVLKKAKGGPIRATNPCV 916



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
            E EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I  A  + AM
Sbjct: 235 NEYEKEINEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAM 294

Query: 393 LAKYSGG 399
           + K  GG
Sbjct: 295 IQKMGGG 301


>gi|262285103|gb|ACY41131.1| ribonucleotide reductase subunit 1 [Wood mouse herpesvirus]
          Length = 783

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 173/725 (23%), Positives = 307/725 (42%), Gaps = 102/725 (14%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLV--YLANDLKYERDFAFEYLGLQILYDRYFLHI 309
           Y + F R ++EG+ A + + S    ++V  Y++      ++    YL     YD Y L  
Sbjct: 57  YLDVFARVLDEGLCAFIGNYSQSLDEMVQRYVSGGFAAVKENG--YLAAARFYDTYVLR- 113

Query: 310 NGSRIEMPQAFFMRVAMGLA------------LKETEKEKRAV---------EFYNLLSS 348
           N    E     FMR+A   A            LK  E ++  V          F+ +++S
Sbjct: 114 NEDIYESVPHMFMRIATFCAYYCIQNECLFKTLKHMELDRGNVVENAIDLITYFFEMVAS 173

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
               C+TP + ++G R   LSSCF+   T+  +   +     E   L     G+G D T 
Sbjct: 174 QQVCCATPVMRSAGLRDANLSSCFILAPTLDSEEKTVEAVFSELTKLLACKSGVGMDLT- 232

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
                 + HG N     +   LK  +      N    R  +V AY+E WH ++ +FL  +
Sbjct: 233 -----TYSHGKN-----LHALLKAMDGQICYFNDHNIRPVSVAAYMEIWHTNIMDFLTAK 282

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
               ++  R  ++     IP++F +    +  + W LF P +   L   YG  F IAY  
Sbjct: 283 --LPENPERCSNIFQGVCIPEIFFRTYKNDPESNWYLFDPSKAEILTHSYGYMFSIAYAG 340

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS----PQQHVGVVH 580
              Q   G  +    I +V     +++ + +TG P++  K   N              ++
Sbjct: 341 LVEQ---GAYEAVVPIKSVMF--ALVSCIIKTGGPYVLNKKAINRHDWHEWSSHQSRAIN 395

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------------QFDYDKLASTIR 626
            +NLC E+ +    +  + CNL +I L     ++              +F  +KL     
Sbjct: 396 CANLCAEV-IQYPGDNVSTCNLANICLPKCLEDDKYTSGKSCLLTYEREFSIEKLERATE 454

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AV +++  I       ++A++   + R++G+G+ G      L+ + Y    + EI D+ 
Sbjct: 455 AAVFIINACIYGGTLPTQRARRG-QSDRSMGIGVQGLADTFALMGLGYFDGGS-EILDQK 512

Query: 687 M-EFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRDELAMNR 740
           + E + F+A++ S+ L +  +   Y++++ S    GV      D    +   RDE     
Sbjct: 513 IAETLYFNALNTSINLVKIGKGEPYANYEESKHAIGVLHWHDWDMCSPMVYTRDE----- 567

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W++L +  +  G+ NS  +A  PTA    I G S S  P Y ++  K +   +  
Sbjct: 568 -----WEDLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEIL 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL---KKIHATAFEIDPMWLI 857
             N  L++ +  R++    ++ +  +      +I ++P+ L    +I  +AF+ DP   +
Sbjct: 623 RPNMTLMSRMSDREV---QLLRECNW------DIAKLPEPLLQKYRIFLSAFDYDPSLYV 673

Query: 858 ESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSR-SATSVE 912
             A  R  +IDQ+QS+ L+L+E    S   +  +    W  GLKT  YY R R +ATS E
Sbjct: 674 RRAMLRAPFIDQSQSMTLFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNE 733

Query: 913 KSTLK 917
              ++
Sbjct: 734 FECVR 738


>gi|488079|gb|AAA56995.1| ribonucleoside-diphosphate reductase large subunit [Drosophila
           melanogaster]
          Length = 180

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 112/177 (63%), Gaps = 5/177 (2%)

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L  NG   E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T 
Sbjct: 3   YLLKRNGKIAERPQHMLMRVAIGI---HGEDIDAAVETYNLLSERYFTHASPTLFAAATN 59

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G
Sbjct: 60  RPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNG 119

Query: 424 VIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           ++P L+V N+ A  V+Q GGKR GA   YLE WH DV EFL+L+KNTG +  R  D+
Sbjct: 120 LVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDL 176


>gi|237738296|ref|ZP_04568777.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420176|gb|EEO35223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 756

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 149/578 (25%), Positives = 256/578 (44%), Gaps = 83/578 (14%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
           E   ++ +  F+ +   L N G     R    S+C++ T P+D L  IF   ++ A    
Sbjct: 42  ELKEMIINKEFIFAGRILSNRGLAKLGRKITYSNCYVVTPPEDNLESIFDTAKKLARTYS 101

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           Y GG G D + +R  GA ++ +   + G I F+ + N T   + Q G+R GA+   ++  
Sbjct: 102 YGGGCGVDISKLRPKGAEVNNSAKYTTGSISFMNLYNMTTDIIGQKGRR-GALMISIDVN 160

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEF+ ++     D  +    N +  + + FMK V ++                   
Sbjct: 161 HPDVEEFIKVK----SDLNKVQKANISVRVDENFMKAVIEDRN----------------- 199

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572
                 YE   +  D GEI + + I A  L++++    +    P I F D     N+ S 
Sbjct: 200 ------YETVFKVEDTGEI-IKKSIDAKKLFKELAIQNWRFAEPGILFWDRISNWNLLSE 252

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            +       +N C E  L +       C LGS+ L +    N FD++KL S +  +V+ L
Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPSFVGENGFDFEKLKSAVVKSVKAL 307

Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++V+D  +  H +E+ ++S    R IGLG++G    L  L + Y +PE++E  D+    I
Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGVLGVGDLLIKLGLKYGAPESLEFCDKVARTI 367

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+SAS  LA+E GA+  +K     Q  F +++           A   T  L      
Sbjct: 368 IDTALSASALLAKEYGAFPRYKEEKILQSPFLLEN-----------ASTETMEL------ 410

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+RNS  + IAPT +I  +  +S  I+P++   + +   S             L
Sbjct: 411 --IKEYGLRNSQLLTIAPTGSIGTMLEISTGIEPNFAFSFTRKTES-------------L 455

Query: 811 KQRDLWDEAMISDLKYH--DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
              D++ +  I   K +  D ++   + +PD       TA  ++P   I+     QK ID
Sbjct: 456 HGEDVYYKVFIPIAKKYMEDNNLTEEDELPD----YFVTAQNLNPYDRIKMQGVWQKRID 511

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + S  + L ++ S ++++ +Y + W  GLK     R+
Sbjct: 512 ASISSTINLVNKVSVEEVEHLYIEGWKNGLKGMTIYRA 549


>gi|291296467|ref|YP_003507865.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
 gi|290471426|gb|ADD28845.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
          Length = 983

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 150/587 (25%), Positives = 254/587 (43%), Gaps = 94/587 (16%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------ 428
            VPDD+ GI  A +  + LA        D++ +R  GA I G+ G S G + FL      
Sbjct: 210 VVPDDMRGIIEAAKSASSLAVKGQEPHVDFSSLRPEGAPIRGSGGTSSGPVSFLVEIFDN 269

Query: 429 ---------KVANDTAV----------AVNQGGKRKGAVCAYLETWHIDVEEFL---DLR 466
                    + A   A            V QGG R+GA  A +   H D+ +FL   DL 
Sbjct: 270 FLEWANLGAEKAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIAIDHPDLLDFLTAKDLD 329

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE--FEIAYEN 524
           +   +    T   N +  + + F + +  +  W +  P EV   +  Y  +  +  A  +
Sbjct: 330 REASEGDIST--FNISILVTEAFWQTLQADGLWAV-EPSEVPGKYYPYPVQGPYTGALPD 386

Query: 525 YERQADRG--EIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
              +A  G   I V+  K+ A  LW ++    + TG P + F D  N  S  +++G    
Sbjct: 387 LPERAQDGARPIPVYDGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKNLGPRYQ 446

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + S+N C EI L         C+LG+INL A+  N  F++ +    +RTAVR LDNV+D+
Sbjct: 447 IRSTNPCGEIPLTVGEP----CDLGAINLAAYVENGAFNFAEFRKDVRTAVRFLDNVLDV 502

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +E  + ++ T R +GLG+MG    L  + +PY+S     +  + M  +   AI+ S
Sbjct: 503 NVFALEDNRVASQTLRRLGLGVMGLADMLIKMGLPYSSEAGRRVVAQVMNAMREEAIAES 562

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             L QERG             VFP+                  +R  ++ L  R +    
Sbjct: 563 ERLGQERG-------------VFPV---------------YEQNRAAFEALGIRPR---- 590

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----- 813
           RN   + +APT T + + GVS  I+P + + ++   + G +  +   L  E+ ++     
Sbjct: 591 RNVAVLTVAPTGTTSMLMGVSSGIEPMF-SPFMWRRIGGQYKALLHPLFVEMMEQFPATG 649

Query: 814 -----DLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                  W+ EA+I  ++ + G++  +E IP  +  +   A ++ P+  +      Q   
Sbjct: 650 PFEKDGAWNWEAIIEAIQANHGTVKGLEGIPAAIALVFEGAHDVPPLDHVRMQGVVQTAF 709

Query: 868 D----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
           D     A SL+  ++ P+   ++ +   Y +A++ G K     R  S
Sbjct: 710 DAEGYAANSLSKTINLPNQATVEDVEAAYTEAYMTGCKGITVYRDGS 756



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 319 AFFMRVAMGLALKE-TEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             F RVA  +A  E +E++K+  + +FY L++S  F      L  +GT+H  + +CF+  
Sbjct: 31  GMFRRVATWVASPEKSEQDKQYWSEQFYRLMASKRFCPGGRVLAGAGTQHGNVLNCFVQG 90

Query: 376 V----PDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
                P    G+     + A++ K  GG G +  P
Sbjct: 91  ATEHDPSSFDGVMEVATKLALVTKVGGGNGVNLDP 125


>gi|134288270|ref|YP_001110433.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
 gi|134132920|gb|ABO59630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 830

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 236/556 (42%), Gaps = 74/556 (13%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +        GI+ AL + A   +  GG+G D++ +R  GA + GT  +
Sbjct: 87  LINCFVQPVGDSVSEYKNGVPGIYPALLQAAETMRRGGGVGYDFSEIRPAGALVSGTFSR 146

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F+ V + +   V   G R+GA    L   H D+  F+   K+ GD      + N
Sbjct: 147 ASGPVSFMAVFDRSCSTVESAGARRGAQMGALRVDHPDILTFIHA-KDKGD----LTNFN 201

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V ++        +EV   H           E Y R+       V+RK 
Sbjct: 202 ISIGVTDAFMRAVERD--------EEVELWHAAEPHPDVKQPETYRREDG---TWVYRKQ 250

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  +W  ++   ++   P I F    N  +    V  + ++N C E  L         C
Sbjct: 251 RAREIWEAVMLSTYDHAEPGILFISRINEENNLHAVETIRTTNPCGEQPL----PPYGCC 306

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +LGS+NL     N       FD++     +R  VR+LD V+D     + + +      R 
Sbjct: 307 DLGSVNLTMFVRNAFTDQAYFDFEGFKDLVRVGVRMLDLVLDATFWPLPEQRDEAMAKRR 366

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG +G  SAL +L I Y S +   +A +  E +   A  AS+ELA+E+GA+ +     
Sbjct: 367 IGLGFLGLGSALVMLGIRYDSDKGCSMAAQISEVMRDEAYLASIELAKEKGAFPAL---- 422

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--A 773
                          EV   L      RLP + ++ +++  G+RNS+ ++IAPT TI  A
Sbjct: 423 ---------------EVEQYLESGFAKRLP-EHIRAQIREHGIRNSHLLSIAPTGTITLA 466

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
                S  I+P++   Y +     D T    F V +   R          L  H G  GN
Sbjct: 467 FADNASNGIEPAFSWTYNRKKRMADGT-HEIFEVADHAYR----------LYRHRG--GN 513

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQ 891
            + +P        TA E+  M  +      Q +ID   ++++N+  D P  +    +Y  
Sbjct: 514 TDSLPGSF----VTALEMSAMDHLRMLQAVQPYIDTSISKTVNVPADYPY-EDFQNLYFA 568

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  GLK     R  S
Sbjct: 569 AWKAGLKGLATYRPNS 584


>gi|332158632|ref|YP_004423911.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
 gi|331034095|gb|AEC51907.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
          Length = 1703

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 32/309 (10%)

Query: 572  PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAST 624
            P  H+ + +   S+ C E  L     E   CNL SINL      ++     FD+D+ A  
Sbjct: 1245 PNHHMYISNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYV 1300

Query: 625  IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   
Sbjct: 1301 IQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMR 1360

Query: 685  ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            +  E+++F+A   SVE A++RG +  +  + + +G  P++                   L
Sbjct: 1361 KVTEYLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVEG----------FYHPEIWNL 1410

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            PWD+L + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F  V+ 
Sbjct: 1411 PWDKLVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDP 1470

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID-----------P 853
                ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I             
Sbjct: 1471 VFEEELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQ 1530

Query: 854  MWLIESASR 862
            MWL +SAS+
Sbjct: 1531 MWLTDSASK 1539



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++KN+ ++     +     
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKR-----INELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +  
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKR 101



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ K
Sbjct: 238 EKEIDEYFRLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKS 421
             GG G +++ +R  G  +  T G +
Sbjct: 298 MGGGTGINFSKLRPEGDLVGTTTGAA 323



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 35/182 (19%)

Query: 411 GAHIHGTNG---KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466
           G H+   NG    + G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  + 
Sbjct: 747 GVHLLTGNGIYTSNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKE 806

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +     +++   W  + F + + +   + L +P                      
Sbjct: 807 KNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLINP---------------------- 842

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNL 584
                GE  V +++    L+ ++  M +    P + F D  N R+  +    G + ++N 
Sbjct: 843 ---RTGE--VVKEVDPKTLFEELAYMAWAKADPGVIFFDVINRRNVLKKAKGGPIRATNP 897

Query: 585 CT 586
           C 
Sbjct: 898 CV 899


>gi|301331891|gb|ADK70921.1| U28 [Elephant endotheliotropic herpesvirus 2]
          Length = 799

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 154/649 (23%), Positives = 276/649 (42%), Gaps = 77/649 (11%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM--LAKYSGG 399
           F  L++    +CS P + N+G     L+SCF+     +       +  + +  +    GG
Sbjct: 185 FQQLVTQTVGLCS-PVMLNAGISTSNLTSCFIIVRDLECNADVNDVHTSILRQILDCGGG 243

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D +             G    +  + K+ N T    N+  +R   +   ++ W+ ++
Sbjct: 244 IGLDVSHF-----------GSGLDISKYFKMLNSTVDFYNEYLRRPVGLSVSMDIWNKNI 292

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKE 517
            + L ++     +      +  A  IPDLF KR  ++ G  W+LFS +    L   YGK+
Sbjct: 293 HKLLRMKMPNASEEESCPSLFNAVMIPDLFFKRYEEDPGGKWSLFSGNMAKVLSSTYGKK 352

Query: 518 FEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSP 572
           FE AY  YE      ++ ++  +I    +   +L  +  TG P+I FKD  N    +   
Sbjct: 353 FEAAYVKYE------QLGLYDTQIPIKEILFLLLNAIVNTGTPYILFKDAMNRHYYMEDN 406

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----------------FANNQ 615
                ++ ++NLC EI  +++  E  VCN+ S+NL                    F  N+
Sbjct: 407 TSSSYIIRATNLCAEIVHHANDSEVGVCNICSVNLTNFVKCYVPVDNQSLQEGIDFVVNE 466

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEK------AKKSNHTHRAIGLGLMGFQSALHL 669
            D+ K+ S       V   VI +NC   E       A+ S   +R++G+G+ G  S    
Sbjct: 467 -DHTKMFSLKDLRETVQKVVIMVNCSIAESGSIPMGARLSAGRYRSMGVGVQGLHSTFLK 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL 728
           + + + S  A ++     E + + A++ S+ L +     + +F  S + +G    D    
Sbjct: 526 MKLGFTSAAARDLNRRIFESMYYSAVNTSMTLCKNGLEPFYNFHRSKYSRGWLHYDG--- 582

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +V+  L  +      W +L+  +   G+ N+  +A+ PT+  +   GVS++  P++ N
Sbjct: 583 WEDVKLTLPSDW-----WSKLRAGIGKYGLYNAQFIALMPTSGTSQTSGVSEAFYPNFSN 637

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI--HA 846
            + K     +  V N  L  E         + +S++ +             + +K+  + 
Sbjct: 638 FHSKVTTGVEVLVANKDLQKEFSMY----SSYLSNIDWEVSKACETYFTEPEWEKLMRYK 693

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLKT-TYY 902
            AFE +   LI+  + R  ++D +QS++L++ E       +IY   R A   GLKT  YY
Sbjct: 694 NAFEYEQEALIDMCADRAPFVDHSQSMSLFVREEDITGCRYIYSLLRHAHKKGLKTGMYY 753

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTEC 950
           LR R    +     K V G    VPV   +S + S+    SCT +D  C
Sbjct: 754 LRIRKQARLRDLEKKDVFG----VPVC--SSGSRSVAKKDSCTEADNTC 796


>gi|171060924|ref|YP_001793273.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
 gi|170778369|gb|ACB36508.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
          Length = 1007

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 155/590 (26%), Positives = 240/590 (40%), Gaps = 73/590 (12%)

Query: 368 LSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           L +CF+  V D +        GI+ AL E A   +  GG+G D++ +R  GA +  T   
Sbjct: 106 LINCFVQPVGDSIAEPEEGFPGIYTALTEAAETMRRGGGVGYDFSRIRPYGAWVGSTQSH 165

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + +++V + +   V   G R+GA    L   H DVE F+   K+ GD      + N
Sbjct: 166 ASGPVSYMRVFDRSCETVESAGSRRGAQMGVLRCDHPDVEAFIHA-KDKGD----LKNFN 220

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D+FMK V  +    L    E  +     G           RQ   G + V+R +
Sbjct: 221 ISVGVTDVFMKAVEADTDVDLVHKAEPGEKQKAAGA----------RQRADG-LWVYRSV 269

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW +++   ++   P + F D  N  +   +   + ++N C E  L         C
Sbjct: 270 RARDLWDQIMRSTYDHAEPGVLFLDRINQDNNLSYCETIAATNPCAEQPL----PPYGCC 325

Query: 601 NLGSINLLAHFANNQFDYDK------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            LGS++L  HF    F+ D        A    TA R+LDNV+D     +   ++     R
Sbjct: 326 CLGSVDL-THFVQRPFESDASFDDAAFAEVCATATRMLDNVLDATVWPLPAQQQEAANKR 384

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG  G   AL +L + Y +P A  +A    E +   A  AS +LAQERGA+  F   
Sbjct: 385 RVGLGFTGLGDALIMLGLRYDTPAARAMATHISEVMRDAAYIASSDLAQERGAFPLFNAD 444

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           L+  G                   +  SRLP   +K+ ++  G+RNS+ ++IAPT TI  
Sbjct: 445 LYLSG------------------NSFASRLP-AAVKEHIRVNGLRNSHLLSIAPTGTISL 485

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A     S  I+P +   Y +     D T    F V +   R L+     +D    D  + 
Sbjct: 486 AFADNASNGIEPPFSWTYTRKKREADGT-FKEFAVEDHAWR-LYRHLKGADAPLTDAFVT 543

Query: 833 NIERIPDDLKK-IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            +E   +  +  + A A  ID                 ++++N+  D P  +    +Y  
Sbjct: 544 ALEMSAEAHESMVAAVAPCID--------------TSISKTVNVPADYPY-EDFQGLYMA 588

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           AW  GLK     R  S      S    V           P +   SLG P
Sbjct: 589 AWKSGLKGLATYRPNSVLGSVLSVTPTVPVVAETAATPQPLTVPVSLGTP 638


>gi|14521806|ref|NP_127282.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus abyssi
            GE5]
 gi|5459026|emb|CAB50512.1| nrd inteins containing ribonucleotide reductase [Pyrococcus abyssi
            GE5]
          Length = 2122

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 32/317 (10%)

Query: 572  PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAST 624
            P+ H+ + +   S+ C E  L     E   CNL SINL      ++     FD+D+ A  
Sbjct: 1665 PEHHMYISNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYV 1720

Query: 625  IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   
Sbjct: 1721 IQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMR 1780

Query: 685  ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            +  E+++F+A   S+E A++RG +  ++ + + +G  P++                   L
Sbjct: 1781 KVTEYLTFYAYKYSIEAAKKRGTFPLYEKTGYPKGELPVEG----------FYHPEIWNL 1830

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            PWD+L + +K  G+RN+      PT +++ I   S  I+P +  +Y KS   G+F  V+ 
Sbjct: 1831 PWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDP 1890

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID-----------P 853
                ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I             
Sbjct: 1891 VFEAELKRRGLYSEELLKKISDNYGSVQGLEEIPEDMRRVFVTALDIHWLDHLLAQANIQ 1950

Query: 854  MWLIESASRRQKWIDQA 870
            MWL +SAS+    I++A
Sbjct: 1951 MWLTDSASKTINMINEA 1967



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 61/104 (58%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++KN+ ++     +     
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKR-----INELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  + 
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKK 100



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ K
Sbjct: 238 EKEIEEYFKLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297

Query: 396 YSGG 399
             GG
Sbjct: 298 MGGG 301



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 32/175 (18%)

Query: 415  HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDR 473
            +G    + G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  + KN G + 
Sbjct: 1154 NGIYTSNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNV 1213

Query: 474  RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                +++   W  + F + + +   + L +P                           GE
Sbjct: 1214 LSNFNISVGIW--EDFWEALKEGKKYPLINP-------------------------RTGE 1246

Query: 534  IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCT 586
              V ++I    L+ ++  M +    P + F D  N R+  +    G + ++N C 
Sbjct: 1247 --VVKEIDPKTLFEELAYMAWAKADPGVIFFDIINRRNVLKEAKGGPIRATNPCV 1299


>gi|71403769|ref|XP_804651.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70867734|gb|EAN82800.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 236

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 15/220 (6%)

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y+ F GS   QG+   D    L E +      R+ R  WD LKKR+   GMRNS  +A
Sbjct: 2   GPYARFAGSPASQGLLHFD----LWEQKP-----RSGRWYWDALKKRMMKSGMRNSLLLA 52

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L +R LW+E M + + 
Sbjct: 53  PMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQII 112

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            ++GS+ NI  IP+DLK+++   +EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L
Sbjct: 113 AYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQL 172

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919
             ++  AW  GLKT  YYLRS+ A      +V+ +TLKG+
Sbjct: 173 TSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTLKGL 212


>gi|304407150|ref|ZP_07388804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
 gi|304344137|gb|EFM09977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
          Length = 875

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 221/488 (45%), Gaps = 38/488 (7%)

Query: 317 PQAFFMRVAMGLA-LKETEKEKRAVE-FYNLLSSFHFM-CSTPTLFNSGTRHPQLSSCFL 373
           P+  + R+A  +A +++ EK K   E F  +L  +  +           +    L +C++
Sbjct: 88  PEEMWDRLAGAMASVEKEEKRKEWTERFRYILDDWKLVPGGRIAAGAGASEELTLFNCYV 147

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P D   GI   L E   +    GG+G + + +R   A + G NG S G + +  + +
Sbjct: 148 IPSPKDSRGGIMETLTEMTEIMARGGGVGINLSSLRPRRAIVAGVNGSSSGAVSWGGLFS 207

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T   + QGG R+GA+   +  WH D+ +F+ +++  G    +  + N +  + + FMK 
Sbjct: 208 YTTGLIEQGGSRRGALMLMINDWHPDLLDFITVKQTMG----QVTNANLSVCVSNGFMKA 263

Query: 493 VTQNAGWTLFSPDEVSDLHD-LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           V ++  W L  PD  +  +D L+  + E      + +++   +  ++ + A  +W  ++ 
Sbjct: 264 VKEDLDWELVFPDTKATGYDQLWDGDLE------KWRSNGHPVIPYKTVRARDVWHTIIE 317

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +++  P + F +  N  S   +   +  +N C E  L +      VCNL +INL   +
Sbjct: 318 SAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAINLSKFY 373

Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
               +  D+++L    R +VR LDNVID   +   + + +    R +GLG MG    +  
Sbjct: 374 DEGKDDVDWNELGRVTRWSVRFLDNVIDKTPYHFPENEANQQNERRVGLGTMGLAELMIK 433

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y SPE++   D+   FI+  +  AS E+A E+G++ +F+   + Q  F  + +   
Sbjct: 434 LGIRYGSPESLSFLDKLYGFIARESYLASSEIASEKGSFPAFEAEPYLQSGFMQNMVEEY 493

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            EV D +  +                 G+RN   +  APT +   + G S  I+P +   
Sbjct: 494 PEVGDAIMKS-----------------GVRNVTVLTQAPTGSTGTMVGTSTGIEPYFAFE 536

Query: 790 YVKSNMSG 797
           Y + +  G
Sbjct: 537 YFRQSRLG 544


>gi|315231895|ref|YP_004072331.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
 gi|315184923|gb|ADT85108.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
          Length = 1042

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 174/358 (48%), Gaps = 25/358 (6%)

Query: 579 VHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQ------FDYDKLASTIRTAV 629
           VH     + I+ N   E   E   CNL SINL A F          FD+D+ A  I+   
Sbjct: 601 VHEYVANSIISRNCGEEPLYEYESCNLASINL-AKFVKYDDEGKPYFDWDEYAYVIQKVA 659

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   ++ E+
Sbjct: 660 KYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEY 719

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           ++F+A   SVE A++RG +  +  S + +G  P++                   LPWDEL
Sbjct: 720 LTFYAYKYSVEAAKKRGTFPLYDKSDYPEGKLPVEG----------FYHREIWNLPWDEL 769

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + +K  G+RN+      PT +++ I   S  I+P +  +Y KS   G+F  V+     E
Sbjct: 770 AEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAE 829

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+R L+ + +++ +  + GS+  +E IP+D++++  TA ++  +  I + +  Q W+  
Sbjct: 830 LKKRGLYSDELLAKISNNYGSVQGLEEIPEDMQRVFVTAMDVHWLDHILAQASIQLWLTD 889

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGK 922
           + S  + + ++ + + +   Y  A+ +G K     R  S +    SVE    K V  K
Sbjct: 890 SASKTINMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAK 947



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 30/237 (12%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           EK   E++ L+++  FM +TP L N+G     LS+CF+  + DD+  I  A  + AM+ K
Sbjct: 238 EKEIEEYFRLMTNQIFMPNTPALINAGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQK 297

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE W
Sbjct: 298 MGGGTGVNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVW 357

Query: 456 HIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D+E+F+  + KN G +     +++   W  + F + + +   + L +P          
Sbjct: 358 HPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGRKYPLINP---------- 405

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                           R   KV R++   AL+ ++  M +    P + F D  N R+
Sbjct: 406 ----------------RTGKKV-REVDPKALFEELAYMAWAKADPGVVFFDVINRRN 445



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A   V        +R + ++  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDEGRIRWAIQRAMWEV-------GVRDEKLLDKVVKDVVGRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I HIE+IQD VE  LM++G   + + Y+LYR++++++R
Sbjct: 57  GKIPHIENIQDIVELELMRNGLFDVAKAYILYRKKKAEIR 96


>gi|196020388|ref|XP_002119099.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
 gi|190576963|gb|EDV18415.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
          Length = 300

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 153/327 (46%), Gaps = 42/327 (12%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           +L ++  D    Y  N + Y RD      G  +L DRY L       E  Q  F+RVA  
Sbjct: 5   VLEKNNQDSTFKYEVN-VDYSRDQNLSESGKAMLLDRYLLEN-----ESYQDLFVRVATH 58

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
            A    + +  A   Y+ +S F FM +TP L N G +     SCFL  V D L  I    
Sbjct: 59  YA----DNKNHAQRLYDYMSKFWFMPATPVLSNGGAKRGLPISCFLNEVGDGLKEIVEIW 114

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            EN  LA   GG+G  W  VR +G  +   +G++ G++PFL V +   +A++QG  R+G+
Sbjct: 115 NENVWLASRGGGIGTFWGNVRSIGEKV-ANSGRTSGIVPFLSVQDRLTLAISQGSLRRGS 173

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
              YL   H ++EEF +LR+ TG D  RRT +++    I D FM  V  +  W L SP +
Sbjct: 174 AAVYLPVSHPEIEEFTELRRPTGGDPNRRTLNLHHGVVITDKFMYAVENDLPWELVSPKD 233

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            S                           +   + A  +W ++L    ETG P++ F D 
Sbjct: 234 NS---------------------------IISIVKARDIWIRILLARIETGEPYLLFIDN 266

Query: 567 CNIRSP---QQHVGVVHSSNLCTEITL 590
            N  +P   ++H   + +SNLC+EITL
Sbjct: 267 VNKNAPDSYKRHNMEIKTSNLCSEITL 293


>gi|119485473|ref|ZP_01619801.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457229|gb|EAW38355.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 405

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 202/456 (44%), Gaps = 72/456 (15%)

Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           M+RV     WTL  P EV      +L +L+G++FE AY+  E+  D+  + +++KI+A  
Sbjct: 1   MRRVIAKEEWTLVDPFEVRTKLGIELAELWGEKFEFAYQEIEQSLDK-TLTLYKKINARE 59

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLG 603
           L++ M+    ETG P++ FKD  N  +P  H G +   NLC E   N +  +E   CNL 
Sbjct: 60  LFKTMMRSQVETGMPYLWFKDTSNRANPNSHEGYIPGGNLCQESWSNVAPGKEAHTCNLN 119

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL         +  +LA     AVR+LDN I++ C   E +K  N  +R IG+G MG 
Sbjct: 120 SLNLANL------EDGELAEICEIAVRLLDNTIELTCPPFEDSKVHNIKYRTIGVGAMGL 173

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y   + +       E + ++    S+ELA+ERG+Y +F GS W QG    
Sbjct: 174 ADWLAKNKRSYRDLDTI---SHLFEDLGYYCTKTSMELAKERGSYPAFAGSSWSQGKL-- 228

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             IG  A+  +    N  S+  W +L   ++  G+RNS+  AIAP  + + + G + SI 
Sbjct: 229 --IG--AKPVEWFLENAHSKERWQQLSLDIQKYGIRNSHITAIAPNTSSSLVQGCTASIL 284

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P Y   +      G   +   F+      RD       S   Y +    N + +      
Sbjct: 285 PCYSRFFYDKWAKGTVPIAPPFI------RD-------SFWFYPENKTLNQQTV------ 325

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYR 890
                        +++ +  QKWID   S+ L         + DEP      K +     
Sbjct: 326 -------------VKAVATIQKWIDTGISMELIFNLNQGVYFPDEPERSIKAKDIFDTLV 372

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            AW  G K  YY+R     +V++ + K  D    A 
Sbjct: 373 MAWQEGCKAIYYIR-----TVQRDSFKEADETCTAC 403


>gi|37651591|ref|NP_932465.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
 gi|34732891|gb|AAQ81429.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
          Length = 570

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 165/609 (27%), Positives = 261/609 (42%), Gaps = 118/609 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT      SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G+R G    Y++  H D   F +L+                            
Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+      +K  R    +A W +++ M  
Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEK------LKA-RDPEYMARWNELMYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G+ + SS LCTEI L S    T  C L S+N+    
Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ +VR LD+V         +++  T+ KA +     RA+GLG +G
Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +  I + S  A  + ++    I   A   S ELA+E G     KG+        
Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
                                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLK-YHDGSIGNIERIP 838
           ++P   N +++ + +GDF   N  L   LK R  D   + ++ D+  YH+GS+ +++ + 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896
           D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++    
Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543

Query: 897 LKTTYYLRS 905
           LK+ YYLRS
Sbjct: 544 LKSLYYLRS 552


>gi|241764581|ref|ZP_04762598.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
 gi|241365984|gb|EER60605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
          Length = 829

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 161/635 (25%), Positives = 272/635 (42%), Gaps = 85/635 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MC 353
           + L +L ++Y L    + +E     + RVA  LA  E  K ++  E    L++ H   + 
Sbjct: 34  ISLDVLREKY-LKPGETNVE---DLYRRVAHALASVEAPKLRQKYEEL-FLANLHAGAIG 88

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDW 404
           +   +  +GT     L +CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 89  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDEGFPGIYEALREAAETMRRGGGVGYDF 148

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV+EF+ 
Sbjct: 149 SRIRPKGAQVKATASVASGPCSYMNVFDQSCSTVESAGARRGAQMGVLRIDHPDVQEFIT 208

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  + D F++ V  +  W L        +H        +A   
Sbjct: 209 AKRTPG----RWNNFNVSVGVSDAFIEAVQHDRPWEL--------VHRARPGTAAMAQGA 256

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           ++R   +    V+  + A ALW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 257 HQRADGQ---WVYATVQARALWDIIMKSAYDFAEPGILFLDHINEDNNLNYCEAIAATNP 313

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS--------TIRTAVRVLDNVI 636
           C E  L S       C+LG + +L  F  + F +D L S         +   VR LDNV+
Sbjct: 314 CGEQPLPS----YGCCDLGPV-ILTRFVRHPFGFDGLPSFDFEAFEKVVALQVRALDNVL 368

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G  + L +L + Y   E   +A    E +   A  
Sbjct: 369 DVTFWPLPQQRDEAMAKRRIGVGFTGMGNTLAMLCLRYDMQEGRAMAARIAEAMRDAAYR 428

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+E+GA+  F+         P  + G  A           SRLP + +K+ ++  
Sbjct: 429 ASVELAREKGAFPKFEAE-------PYLAAGTFA-----------SRLP-ESIKEAIRAN 469

Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T+  A     S  I+P +  +Y +     D +  + + V +   R 
Sbjct: 470 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWMYKRKKREADGS-TSEYSVEDHAWR- 527

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
           L+ E             G++  +PD       +A E+     I      Q ++D A  ++
Sbjct: 528 LYRELG-----------GDVNALPD----YFISALEMPAEGHIAMMEAVQPFVDTAISKT 572

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +N+  D P     D +Y QAW   LK     R  S
Sbjct: 573 VNIPADYPYEDFKD-LYLQAWRARLKGLATYRPNS 606


>gi|319651515|ref|ZP_08005643.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317396830|gb|EFV77540.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 853

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 177/687 (25%), Positives = 279/687 (40%), Gaps = 127/687 (18%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--T 363
           IE P   F      R A GLA  E  +EKR     +FY  L + +F+ +   L+ +G  T
Sbjct: 123 IEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFEKFYQELKNLNFIPAGRVLYGAGADT 182

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 183 DVTYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSSG 242

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472
            + +L         V QGG R+GA    L  WH D+ EF+            L +NT DD
Sbjct: 243 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRILRFLLENTNDD 302

Query: 473 RRRTHDMNTANWIP----DLFMKRVTQN----AGWTLFSPDEVSDLHD------------ 512
             + +      + P    ++ M +   N     G+  FS   + D  +            
Sbjct: 303 TIKKYAKEKLKFTPFTEQEIAMYQGIINYKSIPGYGGFSDKIIQDAEEKLATGGTYSVHN 362

Query: 513 ---LYG--------KEFEIAYEN---YERQ--------ADR-----------GEIKVFRK 539
              L G        KEF  A EN   YE +        AD            G+++ + K
Sbjct: 363 SEFLTGANISVCLTKEFMDAVENDAEYELRFPDVESYDADTMKTYNEEWHKVGDVREWGK 422

Query: 540 ----------ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588
                     I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E 
Sbjct: 423 LGYKVRVHRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQ 482

Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            L   S    VCNL ++NL  +A   N   +++KL  T+   VR+ DNVID   + +E+ 
Sbjct: 483 PLAPYS----VCNLAAVNLAEMADKENKTVNFEKLKRTVEVGVRMQDNVIDATPYFLEEN 538

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           KK     R +GLG+MG    L      Y S E   + D+  E I+  A  ASVELA+E+G
Sbjct: 539 KKQALGERRVGLGVMGLHDLLIYCETEYGSEEGNVLIDKVFETIAATAYRASVELAEEKG 598

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           ++    G          +    L +   E       ++P D +++ +   G+RNS+ + +
Sbjct: 599 SFPFLTGE-------NAEETNRLRKAFTETGF--MQKMPED-IRESILQSGIRNSHLLTV 648

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +   + GVS  ++P +   Y +S   G F  V + +V E   R             
Sbjct: 649 APTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR------------- 695

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---K 883
                 N +  P++L +    A ++ P    +     Q+WID   S++  ++ P G   +
Sbjct: 696 ------NPDADPNNLPEWFVAAMDLAPEAHADVQCVIQRWID--SSISKTVNAPKGYSVE 747

Query: 884 KLDFIYRQAWLMGLK--TTYYLRSRSA 908
           +++ +Y + +  G K  T Y   SR +
Sbjct: 748 QVEQVYERLYRGGAKGGTVYVDGSRDS 774


>gi|308516939|emb|CBW47044.1| hypothetical host-like ribonucleoside diphosphate reductase
           [Roseovarius sp. 217 phage 1]
          Length = 776

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 150/593 (25%), Positives = 253/593 (42%), Gaps = 78/593 (13%)

Query: 330 LKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFG 385
           L     E+ A+E  F+  L  F  + +      +GT R+  L +C+ + T+PD L GIF 
Sbjct: 51  LHNNHAEREALEQRFFQALYDFKLLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFD 110

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            L+E A+  +  GG+G D++ +R  GA + G    S G + F+ V +     +   G R+
Sbjct: 111 MLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRR 170

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+ A +   H D+ EF+  ++    D  R  + N +    D FM+ V  +  W L    
Sbjct: 171 GAMMATMRCDHPDIMEFVHAKQ----DPLRLRNFNVSVLCTDEFMEAVANDEEWDLV--- 223

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                       F                 V+  I AV LW  +L   ++   P + F D
Sbjct: 224 ------------FNGV--------------VYETIRAVELWNTILQNTYDYAEPGVIFID 257

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FA--NNQFDYD--K 620
             N  +    +  + ++N C E  L         C LGS+NL  H FA    Q D D  +
Sbjct: 258 RINKENNLWFLETIAATNPCGEQPL----PPYGACLLGSVNLAKHVFAPFTEQADVDMAE 313

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  ++RT VR+LD+V+D +   + + +K     R  GLG+ G    L +    Y S +AV
Sbjct: 314 LEKSVRTGVRLLDSVVDTSKFPLPEQEKEAKEKRRAGLGVTGLADLLFMTGYRYGSVQAV 373

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           +  +  M  I+  A   S+E+A+E G     + +                E R +   + 
Sbjct: 374 DCTETIMMNIAIWAYEESIEMAKEMGPAPCLQTT----------------EARMKFIQSG 417

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798
              R+P + ++  +   G+RN++ +++APT TI+   G VS   +P +   + +   + D
Sbjct: 418 FMQRMP-EYIRDDIIQWGIRNTHLLSVAPTGTISMYAGNVSSGGEPIFAPSFQRKVTNDD 476

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            T          +   ++D A++   K+     G  +   D+     ATA +++P   I 
Sbjct: 477 GT---------KRTETVYDYAILLFEKHFGEDTGAAQEWMDNYL---ATAQDLEPQDHIV 524

Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             +  QKW+D + S  + L E  S +    +Y  A+  G K     R    T 
Sbjct: 525 MQAVLQKWVDSSISKTVNLPENISFEDFKAVYDMAYETGCKGCTTYRPNDVTG 577


>gi|13095638|ref|NP_076553.1| ribonucleotide reductase large subunit [Bovine herpesvirus 4]
 gi|12802588|gb|AAK07980.1|AF318573_60 ribonucleotide reductase large subunit [Bovine herpesvirus 4]
          Length = 793

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 155/653 (23%), Positives = 275/653 (42%), Gaps = 78/653 (11%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F+  ++S    C+TP L ++G     L+SCF+  V  ++Y       E + +      L 
Sbjct: 179 FFGFIASQVVCCATPVLRSAGVESENLASCFI--VSPEMYS------ETSTITSLYSRLF 230

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              +   G+G  I       + +   LK+ N      N    R  +V  Y+E WH+ + E
Sbjct: 231 PLLSSKSGVGMDITSFANDQKNIHSCLKLINAHVEFFNDHNIRPVSVATYIELWHVQIFE 290

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFE 519
           FL  +     D  R   +  A  +P LF K   ++    W LF P +V  L  LYGKEFE
Sbjct: 291 FLYAKVPENSD--RCASIFQAVCVPSLFFKLYEKDPMGSWHLFDPSDVPGLKLLYGKEFE 348

Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
             Y    +       ++F +++   ++   ++  + +TG P++  K+  N     +  G 
Sbjct: 349 DEYHKLVQS------QLFVKEVPLKSIMFSLINTIIKTGSPYVILKEAINQHHWCETQGE 402

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------------ANNQFDYDKLAS 623
            ++++NLC EI +  S    A C+L +I L                      F +  L  
Sbjct: 403 AINAANLCAEI-VQHSGRHVATCSLANICLPKCLEGLDFLTQCHGGTPVKKTFSFQLLTR 461

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +  AV V++  I +  H +    K     RA+G+G+ G       L   Y   E+ EI 
Sbjct: 462 AVEAAVFVINAAI-VGGHCVLDEVKRGQGERAMGIGVQGLADVFAELGYGYLDKES-EIL 519

Query: 684 DESM-EFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           D  + E + + A+  S ++ +  G   +  F  S   +G+F         E+ D + +++
Sbjct: 520 DRHIFECMYYSAVKTSHDIVRIGGGVPFEGFDRSKLKRGLFHWQE----WEIEDPMLISQ 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W  L K +   G+ NS  +A+ PTA  + I G S++  P + N+  K +   +  
Sbjct: 576 DM---WLNLGKSISQFGIFNSQFIALMPTAGTSQITGHSEAFYPFFANMSSKVSNKEEIM 632

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK---IHATAFEIDPMWLI 857
             N   +  +++RDL        +++++   G++ R P+ L K   I   AF+  P   +
Sbjct: 633 KPNITFLKSVRKRDL------DTVRFYN---GDVSRFPEPLAKRYQIFLNAFDYCPFEQM 683

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTT-YYLRSRSATSVEK 913
           + A +R  ++DQ+QS +L+L E + K   ++       + +GLKT  YY R +   +V  
Sbjct: 684 KRARQRAPFVDQSQSFSLFLKEENVKSASYLKNLLLYGYNLGLKTIMYYCRIQKEFTVSD 743

Query: 914 STLKGVDGKLNAVP------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   + +  P              +PN  T +   P    S  +C+ CQ
Sbjct: 744 FQCLDTGCQFDEDPDNQNKCEETHNKSQEPNYKTEA---PCQLDSSPQCDCCQ 793


>gi|294083957|ref|YP_003550714.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663529|gb|ADE38630.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 573

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 134/571 (23%), Positives = 236/571 (41%), Gaps = 92/571 (16%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398
           +F ++L +  F+ +       G  R     +CF++ V  D +  I     E A   +  G
Sbjct: 52  DFKDVLRNMRFLPAGRVQNAMGAARQTTAFNCFVSGVIGDSMESIMQRATEAAETMRRGG 111

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G D++ +R  G  I     KS G + F+ + +     +   G R+GA    L   H D
Sbjct: 112 GIGYDFSRLRPRGDRIKSLESKSSGPVSFMGIFDSVCQTIASSGHRRGAQMGVLRIDHPD 171

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +E+FL  + N+     +    N +  + D FM  + Q                   GK F
Sbjct: 172 IEQFLTAKHNS----DKLTGFNISIGVTDEFMMHLQQ-------------------GKPF 208

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            + Y+           + ++++   ALW  ++   ++   P + F D  N  +   +   
Sbjct: 209 PLKYDG----------RTYKEVDPEALWDMVMRSTWDWAEPGVLFIDQINRLNNLWYCET 258

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVI 636
           + ++N C E  L +       C LGS NL+ +       F+ D+  + IRT VR +DNVI
Sbjct: 259 IEATNPCGEQPLPA----YGACLLGSFNLVKYVNMEEKMFNLDQFEADIRTVVRAMDNVI 314

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D   + + + +      R +GLG+    +A  +L +PY SPE ++  + +++ +  +A  
Sbjct: 315 DRTIYPLPEQEAEAKAKRRMGLGVTALANAGEMLGLPYGSPEFMDFTETTLKALRDYAYD 374

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+GA+  F    + QG F                     +LP D +++++   
Sbjct: 375 TSADLAHEKGAFPLFDPVKYPQGEF-------------------IQQLPKD-IQEKIGAY 414

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G+RNS+  +IAPT TI+     VS  I+P +   Y ++                ++Q D 
Sbjct: 415 GIRNSHLTSIAPTGTISLTADNVSSGIEPPFSLYYDRT----------------IQQFDG 458

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                + D  +  G  G              TA EI     +   +  Q+++D A S   
Sbjct: 459 HQIERVEDYAFTQGVSGR-------------TANEISAEEHLSVLAMAQQYVDSACSKTC 505

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + D+ S      +Y +AWL G K     R+
Sbjct: 506 NVGDDVSYDDFKNLYMKAWLSGCKGITTFRA 536


>gi|123845657|sp|Q3KSU5|RIR1_EBVG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|64173255|gb|AAY41105.1| unknown [Human herpesvirus 4]
          Length = 826

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 182/728 (25%), Positives = 294/728 (40%), Gaps = 135/728 (18%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
           +H   ++  +   A    YER  +  YL     YD Y       + E  Q F+MR+A   
Sbjct: 68  MHRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQESVQHFYMRLAGFC 127

Query: 326 -------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
                   GL      A  E E +    ++Y   L+S    CSTP +  +G  +  L+SC
Sbjct: 128 ASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPFMRFAGVENSTLASC 187

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI----------------H 415
            LTT PD                     L ++W   + L  H+                 
Sbjct: 188 ILTT-PD---------------------LSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G +GK   ++  +++ N      N G KR  +V AY+E WH  + +FL+ +    ++  R
Sbjct: 226 GQDGKHISLL--MRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETK--LPENHER 281

Query: 476 THDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              + T  ++P+LF K  R T  + W LF P +  DL  LYG+EFE     Y R    G 
Sbjct: 282 CPGIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFE---REYYRLVTAG- 337

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNS 592
            K   ++S  +L   ++    + G P+I  K+ CN    +   G  ++++NLC E+ L  
Sbjct: 338 -KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEV-LQP 395

Query: 593 SSEETAVCNLGSINL-----------LAHFANNQFDYDKLA------------------- 622
           S +  A CNL +I L            A  A+ Q D   LA                   
Sbjct: 396 SRKSVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAIGDGFS 455

Query: 623 -STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAV 680
            + +R A +    V  + C  ++ +   +    A +GLG+ G       L   Y  P + 
Sbjct: 456 LARLRDATQCATFV--VACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSR 513

Query: 681 EIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAM 738
            +  E  E + F A+  S  +    R  +  FK S +  G F   D  G    +  E+  
Sbjct: 514 SLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIPREI-- 571

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +
Sbjct: 572 -------WSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855
               N         R  W    + D +  +   G +  +P+ L++ +    TAF+ +   
Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSV 911
           LI+ +  R  ++DQ+QS +L+L E    +   L  +  +++ +GLKT  YY R      +
Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCR------I 729

Query: 912 EKSTLKGV 919
           EK+   GV
Sbjct: 730 EKAADLGV 737


>gi|82503213|ref|YP_401655.1| BORF2 [Human herpesvirus 4]
 gi|139424487|ref|YP_001129452.1| BORF2 [Human herpesvirus 4 type 2]
 gi|132602|sp|P03190|RIR1_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|238055302|sp|P0C702|RIR1_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1334856|emb|CAA24842.1| unnamed protein product [Human herpesvirus 4]
 gi|23893601|emb|CAD53405.1| ribonucleoside-diphosphate reductase large chain [Human herpesvirus
           4]
 gi|82703963|gb|ABB89232.1| BORF2 [Human herpesvirus 4]
          Length = 826

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 182/728 (25%), Positives = 294/728 (40%), Gaps = 135/728 (18%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
           +H   ++  +   A    YER  +  YL     YD Y       + E  Q F+MR+A   
Sbjct: 68  MHRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQESVQHFYMRLAGFC 127

Query: 326 -------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
                   GL      A  E E +    ++Y   L+S    CSTP +  +G  +  L+SC
Sbjct: 128 ASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPFMRFAGVENSTLASC 187

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI----------------H 415
            LTT PD                     L ++W   + L  H+                 
Sbjct: 188 ILTT-PD---------------------LSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G +GK   ++  +++ N      N G KR  +V AY+E WH  + +FL+ +    ++  R
Sbjct: 226 GQDGKHISLL--MRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETK--LPENHER 281

Query: 476 THDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              + T  ++P+LF K  R T  + W LF P +  DL  LYG+EFE     Y R    G 
Sbjct: 282 CPGIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFE---REYYRLVTAG- 337

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNS 592
            K   ++S  +L   ++    + G P+I  K+ CN    +   G  ++++NLC E+ L  
Sbjct: 338 -KFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEV-LQP 395

Query: 593 SSEETAVCNLGSINL-----------LAHFANNQFDYDKLA------------------- 622
           S +  A CNL +I L            A  A+ Q D   LA                   
Sbjct: 396 SRKSVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAVGDGFS 455

Query: 623 -STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA-IGLGLMGFQSALHLLHIPYASPEAV 680
            + +R A +    V  + C  ++ +   +    A +GLG+ G       L   Y  P + 
Sbjct: 456 LARLRDATQCATFV--VACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSR 513

Query: 681 EIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPI-DSIGLLAEVRDELAM 738
            +  E  E + F A+  S  +    R  +  FK S +  G F   D  G    +  E+  
Sbjct: 514 SLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIPREI-- 571

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +
Sbjct: 572 -------WSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855
               N         R  W    + D +  +   G +  +P+ L++ +    TAF+ +   
Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKTT-YYLRSRSATSV 911
           LI+ +  R  ++DQ+QS +L+L E    +   L  +  +++ +GLKT  YY R      +
Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCR------I 729

Query: 912 EKSTLKGV 919
           EK+   GV
Sbjct: 730 EKAADLGV 737


>gi|109290087|ref|YP_656336.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
 gi|104345760|gb|ABF72660.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
          Length = 570

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 167/611 (27%), Positives = 256/611 (41%), Gaps = 122/611 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT      SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G+R G    Y++  H D   F +L+                            
Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+        + R    +A W ++L M  
Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEKL-------LARDPEYMARWNELLYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G+ + SS LCTEI L S    T  C L S+NL    
Sbjct: 234 RTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTCILSSLNLA--- 290

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ AVR LD+V          +   T+ KA +     RA+GLG +G
Sbjct: 291 -----RWDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +    + S  A  + +     I  +A +AS ELA+E G               P
Sbjct: 346 FHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGE--------------P 391

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
              +G                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 392 EWCVG----------------------------TGMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-----KYHDGSIGNIER 836
           ++P   N +++ + +GDF   N  L   L  R    +  I DL      YH+GS+ +++ 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDR--LSDKEIKDLMENIATYHNGSVQHLDI 481

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++  
Sbjct: 482 LTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVASVHKAFMDD 541

Query: 897 --LKTTYYLRS 905
             LK+ YYLRS
Sbjct: 542 PRLKSLYYLRS 552


>gi|310722362|ref|YP_003969186.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
 gi|306021205|gb|ADM79740.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
          Length = 570

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 167/611 (27%), Positives = 256/611 (41%), Gaps = 122/611 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT      SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G+R G    Y++  H D   F +L+                            
Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+        + R    +A W ++L M  
Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEKL-------LARDPEYMARWNELLYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G+ + SS LCTEI L S    T  C L S+NL    
Sbjct: 234 RTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTCILSSLNLA--- 290

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ AVR LD+V          +   T+ KA +     RA+GLG +G
Sbjct: 291 -----RWDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +    + S  A  + +     I  +A +AS ELA+E G               P
Sbjct: 346 FHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGE--------------P 391

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
              +G                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 392 EWCVG----------------------------TGMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-----KYHDGSIGNIER 836
           ++P   N +++ + +GDF   N  L   L  R    +  I DL      YH+GS+ +++ 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDR--LSDKEIKDLMENIATYHNGSVQHLDI 481

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++  
Sbjct: 482 LTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVASVHRAFMDD 541

Query: 897 --LKTTYYLRS 905
             LK+ YYLRS
Sbjct: 542 PRLKSLYYLRS 552


>gi|321496612|ref|YP_004207897.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332514|gb|ADW24402.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332597|gb|ADW24484.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
          Length = 772

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 172/717 (23%), Positives = 290/717 (40%), Gaps = 93/717 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA--------LKETEK--------EKR 338
           YL  +  YD Y L  +G ++E     F+RV+   A        L +T K        E  
Sbjct: 91  YLSAKRFYDTYVLRGSG-KVESVPFLFLRVSCFCAYQCLQNPCLADTVKALNSWVIDEVS 149

Query: 339 AVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-----LTTVPDDLYGIFGALQENAM 392
            V+ F+ ++S+    C+TP L ++G +   LSSCF     +TT  + +  +   L     
Sbjct: 150 LVKYFFRMVSTMTVCCATPILRSAGVQGANLSSCFIIDRDMTTERETVQAVCSELTS--- 206

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L +   G+G +           HG     + +   L++ N      N    R  +   Y+
Sbjct: 207 LLECKSGVGIN------CAMFSHG----EKSINSLLQMVNGITAYFNDSNVRPVSTALYI 256

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDL 510
           E WH  +  FL  +    ++  R  ++     + DLF K    N    W LF P +   L
Sbjct: 257 EIWHHQIMSFLTAK--LPENPERCANVFQGVSVCDLFFKMYKNNPDGEWFLFDPGQFPGL 314

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             LYGK FE AY    R    G+ K    + +V     +++ + +TG P++  KD  N  
Sbjct: 315 TGLYGKTFEEAYMALVRD---GKFKASVPLKSVMF--ALVSSIVKTGGPYVMSKDAMNRH 369

Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANN------------- 614
              +  G  + ++NLCTE+ + +  ++ + CNL SI+L    H   N             
Sbjct: 370 HWHETQGQAIVAANLCTEV-IQAPGDDISTCNLASISLPECMHMHGNGHSEGGLSCGQTT 428

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              F Y  L   + TAV V++  I       EK  +     R++G+G+ G      +  +
Sbjct: 429 DKTFCYSFLEKAVETAVFVINACIVGGMAPTEKVAR-GQLFRSMGIGVQGLADVFAMCGL 487

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730
            Y   ++ EI    ME + F A+  S+ + +  G   +  ++ S   +G F         
Sbjct: 488 EYFDEKSEEIDSRIMESMYFTAVKTSMNIVKLGGGEPHKRWEKSKLSKGQFHWQE---FT 544

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           + R ++     S   W  L       G  N+  +A+ PTA  + + G + S  P + N+ 
Sbjct: 545 DCRPKV----HSLSQWSALSTDCAMYGTYNAQFIALMPTAGTSQLTGYADSCYPFFGNMA 600

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K +   +    N   ++ +   DL      + ++   G +  +     D  ++  +AFE
Sbjct: 601 TKVSNKEEIMRPNRMFIDSIVPDDL------AAIRQVGGDLAKLPPALADKYRLFKSAFE 654

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKT-TYYLRSR 906
             P   I  A  R  ++DQ+QS+ L+L+E    K  ++      A  +GLKT  YY R +
Sbjct: 655 YSPEDYIRRARVRAPFVDQSQSMTLFLNEKEASKASYVKDLLMYAQEIGLKTLMYYCRIK 714

Query: 907 SAT-SVEKSTLKGVDGKLNAVPVTDPNS-------STH-SLGIPSSCTSDTECEVCQ 954
             T   + S + G     + V    P S       S H S+     C  +  C  CQ
Sbjct: 715 KETICCDFSCVPGPAATPSPVSSFMPESDGDGEGQSGHVSIKRDRECDEEQCCSACQ 771


>gi|226942250|ref|YP_002797323.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
 gi|226717177|gb|ACO76348.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
          Length = 713

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 138/561 (24%), Positives = 238/561 (42%), Gaps = 48/561 (8%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   +QE  +  K   G+G +++ +R  GA + G   ++ G + F+ + +  
Sbjct: 107 TLYDAMDDILAKVQEAGLTLKAGCGIGYEFSTLRPHGAFVSGAGARTSGPLSFMDIFDRM 166

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 167 CFTVSSAGGRRGAQMATFDVAHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQAVE 222

Query: 495 QNAGWTLFSPDEVSDLHDL-YGKEFEIAYENYERQA-----DRGEI--KVFRKISAVALW 546
            +A W L  P    +  +L  G   ++ + ++         D G++  +++ K+ A  LW
Sbjct: 223 NDAEWPLVFPVHPKEAAELDLGDPNQVLWRDWPLHEGYPVRDDGKVACRIYGKVRARHLW 282

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   ++   P     D  N  +       + ++N C E  L         C LGS+N
Sbjct: 283 DMLMVSTYDFAEPGFILIDRVNQLNNNWWCEEIRATNPCGEQPLPPYGS----CLLGSVN 338

Query: 607 LLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L A       A  +FD+++    +R   R+LDNV++IN   ++  ++     R  G+G +
Sbjct: 339 LTAFVEEPFTARARFDWERFRQVVRIFTRLLDNVVEINNLPLQAQRREILDKRRHGMGFL 398

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF---------- 711
           G  SAL LL + Y SPEA    +E    ++      ++ELA+E+G               
Sbjct: 399 GLGSALTLLRLRYGSPEACVFTEEVAREMALVGWEVALELAKEKGPAPLLAQEFEVTAKM 458

Query: 712 ---KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
              +  +   G    D + G +   R    M R +     EL   +   G R ++  +IA
Sbjct: 459 LRQRPEMATDGYRVGDRVAGRVLHARYSRYMQRLAEFA-PELIAALAEQGARFTHHTSIA 517

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++ +             E+   +L     + D +
Sbjct: 518 PTGTISLSLANNASNGIEPSFAHQYSRNLIRPGRKAKEKV---EVFSYELLAYRALVDPQ 574

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGK 883
              G      R+PD       +A +I P   ++  +  QKW+D +  ++ N+  D P   
Sbjct: 575 AQPGGDEPAHRLPD----YFVSADDIGPTQHVDIQAAAQKWVDSSLSKTANVPTDYPFEA 630

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
             D IYR AW  GLK     R
Sbjct: 631 FKD-IYRYAWRQGLKGCTTFR 650


>gi|66391912|ref|YP_238837.1| nrdA [Aeromonas phage 31]
 gi|62114749|gb|AAX63597.1| nrdA [Aeromonas phage 31]
          Length = 570

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 164/609 (26%), Positives = 260/609 (42%), Gaps = 118/609 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+G       SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEAEE-RYFDLLWSGKLAMATPVFCNTGPDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G+R G    Y++  H D   F +L+                            
Sbjct: 163 KTKVAAAGRR-GEWAGYVDFSHGD---FWELQ---------------------------- 190

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+      +K  R    +A W +++ M  
Sbjct: 191 ---GYVLKNPASAH-----VGWVFE--KEDYEK------LKA-RDPEYMARWNELMYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G+ + SS LCTEI L S    T  C L S+N+    
Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ +VR LD+V         +++  T+ KA +     RA+GLG +G
Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +  I + S  A  + ++    I   A   S ELA+E G     KG+        
Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
                                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLK-YHDGSIGNIERIP 838
           ++P   N +++ + +GDF   N  L   LK R  D   + ++ D+  YH+GS+ +++ + 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896
           D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++    
Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543

Query: 897 LKTTYYLRS 905
           LK+ YYLRS
Sbjct: 544 LKSLYYLRS 552


>gi|124262925|ref|YP_001023395.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
 gi|124262171|gb|ABM97160.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
          Length = 862

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 159/618 (25%), Positives = 268/618 (43%), Gaps = 80/618 (12%)

Query: 320 FFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F RV+ G+A  E  + +   E  F++ + +                   L++CF+  V 
Sbjct: 36  IFARVSKGIAQAEKPELREHFEKVFFDNMQAGAIGAGRIMSAGGSEIRATLANCFVQPVG 95

Query: 378 D-------DLY-GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           D       D Y GI+ AL + A   +  GG+G D++ +R  GA + GT+  + G   ++ 
Sbjct: 96  DAVMGQDDDGYPGIYVALLQAAETMRRGGGVGYDFSRIRPKGAFVKGTHSSASGPCSYMD 155

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ N +  I + F
Sbjct: 156 VFDKSCKTVESAGSRRGAQMGVLRIDHPDVMEFITAKREEG----RWNNFNVSVGIVEGF 211

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+ V     W L    E        GKE + A     R+AD   + V+ K+ A  ++  +
Sbjct: 212 MEAVVAGGDWELVHKAEP-------GKEQKDA--GAYRRAD--GLWVYSKVPAKQIFDTI 260

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +   ++   P I F D  N  +  ++   + ++N C E  L         C+LG + +L 
Sbjct: 261 MRSTYDFAEPGILFIDNMNKDNNLRYCERIEATNPCAEEPL----PPYGCCDLGPV-ILP 315

Query: 610 HFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            F  +      +FD++   + +   VR LDNV+D+    +E+ ++ +   R IG+G  G 
Sbjct: 316 RFVRDPFTPAARFDFEAYRAAVAVQVRFLDNVLDVTHWPLEQQEQESRNKRRIGVGYTGL 375

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFP 722
              L +L + Y S E    A E    +   A  ASV+LA+E+G +  F    + ++G F 
Sbjct: 376 GDTLIMLGLRYNSDEGRAKAVEITREMRDAAYLASVDLAKEKGRFPLFNAEKYLEEGTF- 434

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQ 780
                              SRLP + +K  ++  G+RNS+ +AIAPT T+  A     S 
Sbjct: 435 ------------------ASRLP-EHIKAAIREHGIRNSHLLAIAPTGTVSLAFADNASG 475

Query: 781 SIDPSYQNLYVKSNMSGD----FTVVN-------SFLVNELKQRDLWDEAMISDLKYHDG 829
            I+P++   Y +   + D    F  V        S  V E   RD   +A+ +   Y D 
Sbjct: 476 GIEPAFSLAYNRKKRTKDGGHTFYAVKDHAFRVFSETVCEPALRDGLIDAVCN---YKDS 532

Query: 830 SI--GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKL 885
            +  G   ++ D L     TA ++     ++     Q +ID   ++++N+  D P     
Sbjct: 533 FVVGGQTYQVKDVLPASFVTALDMTAAEHLQMMKDVQPYIDTSISKTVNVPADYPY-DDF 591

Query: 886 DFIYRQAWLMGLK--TTY 901
             +Y  AW  GLK  +TY
Sbjct: 592 KGLYLAAWQAGLKGLSTY 609


>gi|9629623|ref|NP_044899.1| ribonucleotide reductase large [Murid herpesvirus 4]
 gi|6625624|gb|AAF19325.1|AF105037_57 61 [murid herpesvirus 4]
 gi|2317993|gb|AAB66451.1| ribonucleotide reductase large [murid herpesvirus 4]
          Length = 783

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 170/729 (23%), Positives = 297/729 (40%), Gaps = 128/729 (17%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA------------LKETEKEKRAV-- 340
           YL     YD Y L  N  + E     FMR++   A            LK  E ++  V  
Sbjct: 100 YLAAARFYDTYVLR-NDVKYESVPHMFMRISAFCAYHCIQNECLFKTLKHMELDRGNVVE 158

Query: 341 -------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL--TTVPDDLYGIFGALQENA 391
                   F+ +++S    C+TP + ++G R   LSSCF+    +  +   +     E  
Sbjct: 159 NAMDLITYFFEMIASQQVCCATPVMRSAGLRDANLSSCFIFAPALDSEEKTVDAVFSELT 218

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L     G+G D      L  + HG N     +   LK  +      N    R  +V AY
Sbjct: 219 KLLACKSGVGMD------LSTYSHGKN-----LHAVLKALDGQITYFNDHNIRPVSVAAY 267

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD 509
           +E WH ++ +FL  +    ++  R  ++     IP++F +    +  + W LF P +   
Sbjct: 268 MEIWHTNIMDFLTAK--LPENPERCGNLFQGVCIPEIFFRTYKNDPESNWYLFDPKKAEV 325

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L + YG  F IAY     Q   G  +    I +V     +++ + +TG P+I  K   N 
Sbjct: 326 LTNTYGYMFSIAYAGLVEQ---GAYEAVVPIKSVMF--ALVSCIIKTGGPYILNKKAINR 380

Query: 570 R-----SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------- 614
                 S  Q+  + + +NLC E+ +    E  + CNL +I L     ++          
Sbjct: 381 HDWHEWSTHQYRAI-NCANLCAEV-IQYPGENVSTCNLANICLPKCLEDDKFVSGKSCLL 438

Query: 615 ----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               +F  ++L      AV +++  I       ++A++   + R++G+G+ G      ++
Sbjct: 439 TYEREFSIERLERATEAAVFIINACIHGGTLPTQRARRG-QSDRSMGIGVQGLADTFAMM 497

Query: 671 HIPYASPEAVEIADESM-EFISFHAISASVELAQ--ERGAYSSFKGSLWDQGVF---PID 724
            + Y    + EI D+ + E + F+A++ S+   +  +   Y++++ S    GV      D
Sbjct: 498 GLGYFDAGS-EILDQKIAETLYFNALNTSINFVKIGKGEPYANYEQSKHSIGVLHWHDWD 556

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               +   RDE          W++L +  +  G+ NS  +A  PTA    I G S S  P
Sbjct: 557 MCSPMVYTRDE----------WEDLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYP 606

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDL-------WDEAMISDLKYHDGSIGNIERI 837
            Y ++  K +   +    N  L++ +   ++       WD                I ++
Sbjct: 607 FYSSMSSKVSNKEEILRPNMTLMSRMSDSEVQTLRECNWD----------------IAKL 650

Query: 838 PDDL---KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQ 891
           P+ L    +I  +AF+ +P   +  A  R  +IDQ+QS+ L+L+E    S   +  +   
Sbjct: 651 PEPLLQKYRIFLSAFDYEPSLYVRRAMLRAPFIDQSQSMTLFLNEDYASSASNIKNLLMY 710

Query: 892 AWLMGLKT-TYYLRSR-SATSVEKSTLK--------------GVDGKLNAVPVTDPNSST 935
            W  GLKT  YY R R +ATS E   ++              G  G+  +        +T
Sbjct: 711 GWECGLKTLMYYCRIRKTATSNEFECVRRNSQQKYVNCADGEGAGGEEPSENCIKAEGAT 770

Query: 936 HSLGIPSSC 944
            SL + +SC
Sbjct: 771 CSLSVGASC 779


>gi|255655272|ref|ZP_05400681.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-23m63]
          Length = 659

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 148/581 (25%), Positives = 258/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EEFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N+ S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDRDL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|296451257|ref|ZP_06892997.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296880391|ref|ZP_06904354.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
 gi|296259863|gb|EFH06718.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296428632|gb|EFH14516.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
          Length = 729

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 148/581 (25%), Positives = 258/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EEFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N+ S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDRDL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|66732768|gb|AAY53359.1| gp56 [Listeria phage P100]
          Length = 343

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 61/355 (17%)

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTE-------ITLNSSSEETAVCNLGSINLLAHFAN 613
           +T ++   +   +Q +    S+ + TE       I +   + +  VCNL SINL + F+ 
Sbjct: 27  LTGRELTTLTESKQEIAQNMSATVVTEEIIDGDKIVVTKEAGDFVVCNLSSINLGSVFSE 86

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                D +   +   VR+LDNVI++N   + +A  +N  +RA+GLG  G+   L    I 
Sbjct: 87  E----DVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRAVGLGTFGWHHLLAKKGIH 142

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA   AD   E I+FH I AS++LA+E+GAY  FK S WD G +            
Sbjct: 143 WDSEEATNFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSSWDTGEYF----------- 191

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
              + N TS   W +L K+VK  G+RN   MA+AP  + A I G + SIDP Y + Y + 
Sbjct: 192 --SSRNYTSD-TWVDLAKKVKEKGIRNGYLMAVAPNMSTAQIAGSTASIDPIYDSFYYE- 247

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                            +++D     +  +L  +  +              + +A++++ 
Sbjct: 248 -----------------EKKDYRRPVIAPELNLNTYAF-------------YKSAYKVNQ 277

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           +  ++   +RQ+ IDQA S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 278 IQSVKQNGKRQRHIDQAISFNFYV--PSGIKASKLLELHTTAWSEGLKTTYYVRS 330


>gi|255649712|ref|ZP_05396614.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 659

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N  S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|121611904|ref|YP_999711.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
 gi|121556544|gb|ABM60693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
          Length = 813

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 155/607 (25%), Positives = 259/607 (42%), Gaps = 82/607 (13%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ--LSSCFLTT 375
           Q  + RVA  LA  E  + +   E   L +          + ++     Q  L +CF+  
Sbjct: 34  QMLYQRVARALASVEAPELRSRYEALFLANLQAGAIGAGRIMSAAGTDIQATLINCFVQP 93

Query: 376 V--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           V         D   GI+ AL+E A   +  GG+G D++ +R  GA +  T   + G   +
Sbjct: 94  VGDCIQGQDEDGFPGIYEALREAAETMRRGGGVGYDFSRIRPKGARVMATASMASGPCSY 153

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           + V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ N +  +PD
Sbjct: 154 MNVFDQSCATVESAGARRGAQMGVLRIDHPDVHEFISAKRQPG----RWNNFNVSVSVPD 209

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            F++ +  +A W L        +H        +A   ++R AD G+  V+  + A ALW 
Sbjct: 210 AFIQALQDDAAWDL--------VHKARPGAALLAQGAHQR-AD-GQW-VYASVPARALWE 258

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +++   ++   P I F    N  +   +   + ++N C E  L +       C+LG + +
Sbjct: 259 RIMRSAYDYAEPGILFLGRINEDNNLHYCETITATNPCGEQPLPA----YGCCDLGPV-I 313

Query: 608 LAHFANNQFDYD--------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           L  F  + F +           A  +   VR LDNV+D+    + + ++     R IG+G
Sbjct: 314 LPRFVRHPFGFGGAAAFDFEAFAQAVALQVRALDNVLDLTYWPLPQQREEAMAKRRIGVG 373

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G  + L +L + Y  PE   +A      +   A  ASV+LA+E+GA+  F    +   
Sbjct: 374 FTGLGNTLAMLCLRYDRPEGRAMAVRIARCMRDAAYRASVDLAREKGAFPHFSAGPY--- 430

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICG 777
                    LAE R        SRLP + LK  ++  G+RNS+ ++IAPT T+  A    
Sbjct: 431 ---------LAEGR------FASRLP-EALKAAIRQHGIRNSHLLSIAPTGTVSLAFADN 474

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  I+PS+   Y +   + D      + V +   R      +  +L       G+ + +
Sbjct: 475 ASNGIEPSFAWTYKRKKRAADGGSTE-YAVQDHAWR------LYRELG------GDAQAL 521

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAW-- 893
           PD       +A ++     I      Q W+D A  +++N+ +D P     D +Y QAW  
Sbjct: 522 PD----YFVSALDMPVQAHIAMMEAVQPWVDTAISKTVNIPVDYPYEDFKD-LYLQAWRA 576

Query: 894 -LMGLKT 899
            L GL T
Sbjct: 577 RLKGLAT 583


>gi|255516612|ref|ZP_05384288.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-97b34]
          Length = 689

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N  S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|302344178|ref|YP_003808707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
 gi|301640791|gb|ADK86113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
          Length = 604

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 165/616 (26%), Positives = 253/616 (41%), Gaps = 82/616 (13%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSSFHFM 352
           ++L  RY       R E P+    RVA  +A  E   +  A        F+ L++   F+
Sbjct: 14  ELLRRRYLAVGPDGRHESPERMLWRVARAVAAAEERWDGAASAAAMAGRFFELMAGGLFL 73

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G R  QLS+CF+  V D L  IF AL++ A++ K  GG G D++ +R  G 
Sbjct: 74  PNSPTLINAGRRLGQLSACFVLPVEDSLESIFEALKQAALIHKSGGGTGFDFSRLRPRGD 133

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G S G + F+ V +    AV QGG R+GA  A L  WH D+ EF+  ++  G  
Sbjct: 134 DVASTRGVSSGPLSFMHVFDVATEAVRQGGVRRGANMASLAAWHPDILEFVTAKQTPG-- 191

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  + N + W  D FM    Q  GW L +P     +  L   E     E   R A   
Sbjct: 192 --RLENFNLSLWADDAFMDAAAQGRGWALRNPRHGRTVATLEAAEL---LEVVARAAH-- 244

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                                  +G P + F    N  +P   +G + + N C E  L  
Sbjct: 245 ----------------------ASGEPGMLFGGAINRANPTPALGAIEAVNPCGEQPLLP 282

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  C LGS+ L         D+  L      A R LD+V++IN   + +  +++  
Sbjct: 283 YES----CVLGSLALPRFVRGGDMDWPALEEAAALATRFLDDVLEINRQPLPQVAEASLR 338

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLGL+G   AL +L + Y S  A ++A   M  ++  A   S  LA+ RG + +F 
Sbjct: 339 TRKIGLGLLGLADALIMLGLAYDSQPARDLAGRVMARVTAAAREQSAALARRRGDFPAFA 398

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S                  R   A N                  MRN+    IAPT  +
Sbjct: 399 NS----------------APRAAGAKN------------------MRNATVSTIAPTGAL 424

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + + G S  I+P +   Y +    G    +     +  L+   L   A ++ L+   G  
Sbjct: 425 SLLLGWSSGIEPLFALHYHRHMQDGQVLELTCRPFLQRLRALGLDSPANLAALRAQ-GRA 483

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK---KLDFI 888
             ++ +P    ++ ATA +I P   +   +  Q+ +D   S  + L  PS     ++  I
Sbjct: 484 SAVQGLPAAEARLFATAHQIAPHDHLAMQAACQRHVDNGVSKTINL--PSAATVGQVREI 541

Query: 889 YRQAWLMGLKTTYYLR 904
           + QA  + LK     R
Sbjct: 542 FLQAHALNLKGVTVFR 557


>gi|312137428|ref|YP_004004765.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
 gi|311225147|gb|ADP78003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
          Length = 789

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 39/311 (12%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL     N + D+ KL    R A+  LDNVID+N +  ++ +K     R +GLG
Sbjct: 484 CNLGSINLTKIVKNKKIDWKKLRRITRIAIHFLDNVIDVNKYPTKEIEKMTKKTRKVGLG 543

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY SP+A++IA++ M FIS  A   SVEL +ERG++ SFKGS W++ 
Sbjct: 544 VMGFADMLIKLGIPYDSPKALQIAEKLMNFISKEARKKSVELGEERGSFPSFKGSKWEKE 603

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +                                    MRN+    IAPT T++ I  VS
Sbjct: 604 GYE----------------------------------HMRNATTTTIAPTGTLSIIANVS 629

Query: 780 QSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI+P +   +++  M G   + ++       K+R  +   ++  +    GSI + + IP
Sbjct: 630 SSIEPIFAIAFIREVMEGTVLLEIHPLFEKIAKERGFYSLDLMKKIA-KKGSIQDFDEIP 688

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D++++  T+ +IDP+W ++  +  QK++D A S  + L  +   K ++ ++  A+ +G 
Sbjct: 689 EDIRRLFVTSHDIDPIWHVKMQAAFQKYVDNAVSKTVNLPKDAKPKDVERVFLTAYKLGC 748

Query: 898 K--TTYYLRSR 906
           K  T Y   S+
Sbjct: 749 KGITVYRYGSK 759



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 37/296 (12%)

Query: 297 GLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKET---EKEKRAVE--FYNLLSSFH 350
            L++L  RY   +  G  IE P+  F RVA  +A  +T   EK+    E  FYN++ +F 
Sbjct: 7   ALEVLKRRYLRRNEKGEVIETPKEMFRRVAHHVAKADTIYGEKDISETEEKFYNIMKNFE 66

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG+G  ++ +R  
Sbjct: 67  FLPNSPTLMNAGTAIGQLSACFVLPVGDSIEEIFDALKYMALIHKSGGGVGFSFSKLRPK 126

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  +  T G + G + F+++ +     + QGG+R+GA    L   H D+EEF++ +K  G
Sbjct: 127 GDVVASTGGVASGPVSFMRIFDVATDVIKQGGRRRGANMGVLRYDHPDIEEFIESKKVEG 186

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               +  + N +    + FM  V +N  + L +P                      R   
Sbjct: 187 ----KFSNFNISVAADEKFMDAVIKNKEYELINP----------------------RNKK 220

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             +    R I     +RK++ M +  G P + F D  N  +P  H+G + ++N C 
Sbjct: 221 VVKKVKARNI-----FRKIVKMAWSHGDPGMIFLDHINKHNPTPHLGKIEATNPCV 271


>gi|254974806|ref|ZP_05271278.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255092194|ref|ZP_05321672.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255313933|ref|ZP_05355516.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|260682868|ref|YP_003214153.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260686466|ref|YP_003217599.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
 gi|306519825|ref|ZP_07406172.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-32g58]
 gi|260209031|emb|CBA62135.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260212482|emb|CBE03396.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
          Length = 729

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 148/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EEFIDIKT----DLEKVTKANISIRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N  S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|85057305|ref|YP_456221.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789410|gb|ABC65142.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 845

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 153/576 (26%), Positives = 255/576 (44%), Gaps = 57/576 (9%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T +R 
Sbjct: 295 FTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRA 354

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I G  G  +GV+   K+ + +    +Q G+R GA   YL  +H D+ +FL  +K +
Sbjct: 355 KGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLNVFHADIIDFLSTKKLS 414

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE-NYER 527
            D+  R   ++    +P+  ++   +N     F P  V      YGK F +IA + +Y  
Sbjct: 415 ADEDVRVKTLSLGVVVPNKMIELARKNEVMYTFFPHTV---FLEYGKNFADIAVDMSYWY 471

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  KV +K I+   L   +  M  E+G+P++ F D  N  +       V  SNLCT
Sbjct: 472 DILIVNPKVQKKAINPRQLLELIAQMQGESGYPYLMFCDNTNQANTSDL--KVKFSNLCT 529

Query: 587 EI---TLNSSSE---ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVI- 636
           EI   T+ S  +   +T    +G   S NL +    N    + +  T+  A+ V++ V  
Sbjct: 530 EILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMNCVSE 589

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           + N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     I+F+++ 
Sbjct: 590 NTNISYVPAVAKANFLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAINFYSLL 649

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKK 751
            S   A+  G  +  FK S +  G +  +   +L +      M +   LP    W++LK+
Sbjct: 650 HSCNKAKTTGKKFYRFKKSKYADGSYFNNRGEILPKTNKIKKMFQNITLPTQSDWNQLKQ 709

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V   G+ NS+ +AIAP  +I  I G + S+ P  Q                  LV E  
Sbjct: 710 DVMKFGLYNSHRLAIAPNGSIGYIMGATPSLTPVKQ------------------LVEERT 751

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
             +      +  LK                  ++ TA++I+   LI+  +  QK +DQ  
Sbjct: 752 YGNSKTYCPMPALK--------------QASFMYTTAYKINKYDLIDVIAIAQKHVDQGI 797

Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           S  L +  + + ++L   Y  A    +KT YY R++
Sbjct: 798 SFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 833


>gi|299532605|ref|ZP_07045994.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
 gi|298719408|gb|EFI60376.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
          Length = 797

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 197/447 (44%), Gaps = 56/447 (12%)

Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           L +CF+  V D   G        I+ AL + A   +  GG+G D++ +R  GA + GTN 
Sbjct: 79  LINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G   F+ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ 
Sbjct: 139 FASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  +   FM+ V  +A W L        +H     E +I    + R  D G + V++ 
Sbjct: 195 NVSVGVSSAFMQAVRDDAEWEL--------IHVASPSEAQIQAGAHRR--DDG-LWVYKS 243

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A ALW  ++   ++   P I F D  N  +   +   + ++N C E  L         
Sbjct: 244 QPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQPL----PPYGC 299

Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           C+LG + +L  F    F      D +   + +   VR+LDNV+D     + + ++     
Sbjct: 300 CDLGPV-ILTRFVREAFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+E+GA+  F  
Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAREKGAFPLFNA 418

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772
             + +  F                     RLP  EL+  +K  G+RNS+ ++IAPT T+ 
Sbjct: 419 KQYLKSGF-------------------AKRLP-KELRATIKKHGLRNSHLLSIAPTGTVS 458

Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798
            A     S  I+P++   Y +   + +
Sbjct: 459 LAFADNASNGIEPAFSWTYTRKKRTAN 485


>gi|117926763|ref|YP_867380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
 gi|117610519|gb|ABK45974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
          Length = 707

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 159/663 (23%), Positives = 282/663 (42%), Gaps = 69/663 (10%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE 341
           D+  +RD   +     I   +Y L   G     +  +  F RVA  LAL   E+E    +
Sbjct: 9   DINPQRDLELQSASQDIWDRKYRLKSKGGDPVDKTIEDTFKRVARALAL--VEQEPLQEQ 66

Query: 342 FYNLLSSFHFMCSTPT---LFNSGTR--HPQLSSCFLT---TVPDDLYGIFGALQENAML 393
           +Y          + P    + N+G R   P  S+   T   TV D +  I  A+ E  + 
Sbjct: 67  WYQRFLWALMQGAIPAGRIVSNAGARDHKPATSTINCTVSQTVKDSMDDILAAVHEAGLT 126

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K   G+G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +
Sbjct: 127 LKAGCGIGYEFSTLRPRGAFVAGAGSSTSGPLSFMDIYDAMCRTVSSAGGRRGAQMATFD 186

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DV +F+  ++  G    R    N +  + + FM+ V  +  W L  P    +L D 
Sbjct: 187 ITHPDVVDFIRAKREDG----RLRQFNLSCLVTEQFMEAVKSDMDWELVFPANHYELDD- 241

Query: 514 YGKEFEIAYENYE-----RQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                EI Y ++      +  ++GE+  +V++ I A  LW  +++  ++   P     D 
Sbjct: 242 --PTVEIVYRHWPVTEGYKTNEQGEVACRVWKSIPARRLWDVVMSSTYDYAEPGFILIDK 299

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDK 620
            N ++       + ++N C E  L         C LGS+N LA F  N      +FD+ +
Sbjct: 300 VNEQNNNWFCEDIRATNPCGEQPL----PPYGACLLGSVN-LARFVKNPFTAKAEFDWAR 354

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               +    R+LDNV++I+   +          R  G+G +G  S L +L++ Y   ++V
Sbjct: 355 FKEVVAVFTRMLDNVVEIHGLPLPGQADEIAHKRRHGMGFLGLGSTLTMLNMVYGDRQSV 414

Query: 681 EIADESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVR 733
           E   +    ++       +ELA E+G        Y+  +  +  +     D I +  ++ 
Sbjct: 415 EFTSQVAREMALTGWEVGLELANEKGPAPVMNQMYTITEAMMAKRPEMANDGICVGDQLP 474

Query: 734 DELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQ 787
            ++ M R SR     P + L+KR++T G R S+  +IAPT TI+   G  VS  I+PS+ 
Sbjct: 475 GKVLMARYSRYMAKFP-ERLRKRIETEGSRFSHHSSIAPTGTISLSLGNNVSNGIEPSFA 533

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + Y +           + +    K ++  D      L Y      + +   ++ K +   
Sbjct: 534 HKYSR-----------NIIREGRKTKEKVDVFSYELLAYRALVNPDADPYAEEEKNLLPA 582

Query: 848 AF----EIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
            F     I+P   ++  +  Q+W+D   ++++N+  D P  +  D IY  A+  GLK   
Sbjct: 583 TFLDSNAINPRAHVDIQAAAQEWVDSSISKTINVPTDFPYDEFKD-IYLYAYEKGLKGCT 641

Query: 902 YLR 904
             R
Sbjct: 642 TFR 644


>gi|126698858|ref|YP_001087755.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile 630]
 gi|255100279|ref|ZP_05329256.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-63q42]
 gi|255306218|ref|ZP_05350390.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile ATCC 43255]
 gi|115250295|emb|CAJ68117.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile]
          Length = 729

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 147/581 (25%), Positives = 257/581 (44%), Gaps = 94/581 (16%)

Query: 345 LLSSFHFMCSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGG 399
           L+    F+ +   L N G     +    S+C++   P D +  IF   ++ A    Y GG
Sbjct: 135 LIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D + +R  GA ++     + G + F+++ + T   + Q G+R GA+   ++  H ++
Sbjct: 195 VGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRGRR-GALMISMDVNHPEI 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+F+D++     D  +    N +  + D FM+ V +                 LY   FE
Sbjct: 254 EDFIDIKT----DLEKVTKANISVRVTDEFMQAVREKK---------------LYNCTFE 294

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHV 576
           +           GE K+ + ++A  L+ K +   ++   P I F D     N  S  ++ 
Sbjct: 295 VE--------TTGE-KIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNF 345

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANN-QFDYDKLASTIRTAVRV 631
                 N C E  L S       C LGSINL    +  F  +  FD +KL S +R AV  
Sbjct: 346 -CFSGVNPCAEEPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVA 400

Query: 632 LDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           L++V+D  +N H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + 
Sbjct: 401 LNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKT 460

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A+  S  +A+E G +S +K     +  F I+++                    ++ 
Sbjct: 461 MLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN-------------------EDT 501

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNS 804
           K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y++   S       + V   
Sbjct: 502 KEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKTESLHDEDVYYKVYTP 561

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +   + ++ + DE  + D      +IG  ERI  +++K+          W        Q
Sbjct: 562 IVKEYMDKKGITDEECLPDFFVTAMNIGYEERI--NMQKV----------W--------Q 601

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           K+ID + S  + +  E + + +  IY +AW  GLK     R
Sbjct: 602 KYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFR 642



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG G  R +   DI + +          +N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEG-GVDREL-AYDISRKIAND-------YNSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R 
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRT 94


>gi|78127896|gb|ABB22280.1| ribonucleotide-reductase large subunit-like protein [Ovine
           herpesvirus 2]
          Length = 785

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 145/611 (23%), Positives = 256/611 (41%), Gaps = 79/611 (12%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSG 398
           F++ L+     C+TP + ++GTRH  L+SCFL + PD   +       LQE   L     
Sbjct: 169 FFSPLAQQLVCCATPIMRSAGTRHANLASCFLMS-PDLSSEANTTAALLQELTSLLSVKS 227

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G D T          G  GKS  V   L + +      N    R  +V AY+E WH  
Sbjct: 228 GVGCDVTSF--------GHGGKS--VQSCLSLIDAQVEYFNDQNPRPVSVAAYMEVWHSQ 277

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLFSPDEVSDLHDLYGK 516
           ++EFL ++    ++  R   +     IP LF  +     N  W LFSP++  +L  LYG+
Sbjct: 278 IQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPEDAGNLPHLYGE 335

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE   R     E +   ++   +L   ++  + +TG P+I +KD CN R  ++  
Sbjct: 336 EFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNARHWKEMR 390

Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------------ 611
           G  + S+NLC E+ +     + + CNL ++ L                            
Sbjct: 391 GQAIASANLCAEV-IQYPGRDVSTCNLANVCLPMCLISTPVDPRAPSGQNYSGEVVKSEA 449

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +N  F    L   +  AV +++  ID      E  ++     R++G+G+ G       +
Sbjct: 450 VSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRGQR-ERSMGIGVHGLADVFAEM 508

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-G 727
              Y  P A  +  +  E + + A+  S  + +  G   +  ++ S   +GVF  +   G
Sbjct: 509 GYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSRGVFHWEGWDG 568

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +   + +           W  L +     G+ NS  +A+ PT   + + G ++S  P + 
Sbjct: 569 VKLSIPEH---------EWSSLARSCVHSGVYNSQFVALMPTVGSSLLTGYAESYYPFFA 619

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA- 846
           N+  K +   +    N      + + DL    +           G++  +P  L++ ++ 
Sbjct: 620 NVSSKVSSKEEIMKPNVTFWKRVSEEDLHTVRVYG---------GDVALLPSPLREKYSL 670

Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT- 900
             +AF+      +  A  R  ++DQ+QS + YL E    S K L  +    +  GLKT  
Sbjct: 671 FLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAHGLKTIM 730

Query: 901 YYLRSRSATSV 911
           YY + +  +++
Sbjct: 731 YYCKVKKQSTM 741


>gi|260654687|ref|ZP_05860177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
 gi|260630703|gb|EEX48897.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
          Length = 881

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 158/604 (26%), Positives = 255/604 (42%), Gaps = 105/604 (17%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKS 421
           T + QL +CF+ +VPD + GIF A+++ A+++KY GG+G ++  +R  GA I  GT GK+
Sbjct: 159 TANQQLFACFVVSVPDSIEGIFDAVKDAAIISKYGGGVGANFGHLRESGAPIKGGTGGKA 218

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F++  N     V QGG+R+ A+   L   H D+E F+D +   G    R    N 
Sbjct: 219 SGPVSFMETWNTMGSVVVQGGRRRAALMGMLPDNHPDIERFMDAKTEDG----RLPYFNI 274

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D  +    +   + L S                           R + K    + 
Sbjct: 275 SVCVSDRLVNAAREGGDFPLVS---------------------------RVDGKTAATVP 307

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           A  LW K+ +  +  G P + F D       +R   +   V+ S+N C E  L + +   
Sbjct: 308 AAQLWDKLCSNAWRRGDPGVFFIDRAGADNLLREDPEF--VIESTNPCGEQPLPNYTS-- 363

Query: 598 AVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             CNLGSINL A  A +      FD  +    +  ++  LD VID   + +E+  +    
Sbjct: 364 --CNLGSINLSAFVAPDGSGQLAFDEARFVDQVYRSMVYLDLVIDSCSYPLERIGRRTRQ 421

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE----LAQERGAY 708
            R +GLGLMG   A     + Y SPE     D     ++  A+ A+V+    L +E  A 
Sbjct: 422 IRPVGLGLMGLSDAAIASGLVYGSPEFSGFCDRLASVMAVCALLATVDSVDHLGKEPFAA 481

Query: 709 SS------------FKGSLW-DQGVFPIDSIGLLAEV--RDELAMNRT------------ 741
           SS              G L+  Q +  +D  G L  V    EL +  T            
Sbjct: 482 SSAVVKLFAPLRDELGGDLFMSQTMETLDEEGFLRVVGRMKELGLPYTLCNTLQAAPGVL 541

Query: 742 SRLPW---DELKKRVKTI---GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            RL     +EL++ +  +    MRNS  ++IAPT +I+ +   S  I+P++   + +  M
Sbjct: 542 KRLEGGSPEELRRLLGAVLGGRMRNSRRLSIAPTGSISMLLDASAGIEPNFAWSWNRKVM 601

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             D    N +   +   R + DE      K    + G +E           TA+++ P  
Sbjct: 602 KSDG---NGYETRQYFHRLVTDEG-----KRQLSAGGKLE------DPRFVTAYDLSPEG 647

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLK--TTYYLRSRSATS 910
            +E      +++D   S  + L  PS   +D    +Y + + +G K  T Y   SRS   
Sbjct: 648 HVEVTGIFARYVDSGISKTVNL--PSSATVDDVKAVYERCYDLGCKGITIYRDGSRSEQP 705

Query: 911 VEKS 914
           +E S
Sbjct: 706 IEVS 709


>gi|264678224|ref|YP_003278131.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
 gi|262208737|gb|ACY32835.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
          Length = 797

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 198/447 (44%), Gaps = 56/447 (12%)

Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           L +CF+  V D   G        I+ AL + A   +  GG+G D++ +R  GA + GTN 
Sbjct: 79  LINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G   F+ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ 
Sbjct: 139 FASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  +   FM+ V  +A W L        +H     E +I    + R  D G + V++ 
Sbjct: 195 NVSVGVSSAFMQAVRDDAEWEL--------VHVASPSEAQIQAGAHRR--DDG-LWVYKS 243

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A ALW  ++   ++   P I F D  N  +   +   + ++N C E  L         
Sbjct: 244 QPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQISATNPCGEQPL----PPYGC 299

Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           C+LG + +L  F  + F      D +   + +   VR+LDNV+D     + + ++     
Sbjct: 300 CDLGPV-ILTRFVRDSFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+E+        
Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAREK-------- 410

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772
                GVFP      L   +  L      RLP  EL+  ++  G+RNS+ ++IAPT T+ 
Sbjct: 411 -----GVFP------LFNAKQYLKSGFAKRLP-KELRATIRKHGLRNSHLLSIAPTGTVS 458

Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798
            A     S  I+P++   Y +   + +
Sbjct: 459 LAFADNASNGIEPAFSWTYTRKKRTAN 485


>gi|157325079|ref|YP_001468504.1| gp124 [Listeria phage A511]
 gi|66733087|gb|AAY52905.1| gp124 [Listeria phage A511]
          Length = 343

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 170/355 (47%), Gaps = 61/355 (17%)

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTE-------ITLNSSSEETAVCNLGSINLLAHFAN 613
           +T +    +   +Q +    S+ + TE       I +   + +  VCNL SINL + F+ 
Sbjct: 27  LTGRGLTTLTESKQEIAQNMSATVVTEEIIDGDKIVVTKEAGDFVVCNLSSINLGSVFSE 86

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                D +   +   VR+LDNVI++N   + +A  +N  +RA+GLG  G+   L    I 
Sbjct: 87  E----DVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRAVGLGTFGWHHLLAKKGIH 142

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA   AD   E I+FH I AS++LA+E+GAY  FK S WD G +            
Sbjct: 143 WDSEEATSFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSSWDTGEYF----------- 191

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
              + N TS   W +L K+VK  G+RN   MA+AP  + A I G + SIDP Y   Y + 
Sbjct: 192 --SSRNYTSD-TWVDLAKKVKEKGIRNGYLMAVAPNMSTAQIAGSTASIDPIYDYFYYE- 247

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                            +++D     +  +L  +  +              + +A++++ 
Sbjct: 248 -----------------EKKDYRRPVIAPELNLNTYA-------------FYKSAYKVNQ 277

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           +  ++   +RQ+ +DQA S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 278 IQSVKQNGKRQRHVDQAISFNFYV--PSGIKASKLLELHTTAWSEGLKTTYYVRS 330


>gi|56807758|ref|ZP_00365618.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 522

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 139/542 (25%), Positives = 234/542 (43%), Gaps = 73/542 (13%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
            G+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H 
Sbjct: 2   AGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHP 61

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    
Sbjct: 62  DIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNY 121

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I     E  A+    K   KI A  L  ++  +  E+G+P+I   D  N  +P    G
Sbjct: 122 LDITNMYDELVANPKITKT--KIKARDLETEISKLQQESGYPYIINIDTANKANPID--G 177

Query: 578 VVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI        +N + E   +     CNLGS N+L    +  F       +I
Sbjct: 178 KIIMSNLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSI 232

Query: 626 RTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +T  R L  V D +    +   K  N      GLG MG  S L   HI Y SPE++E  D
Sbjct: 233 KTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTD 292

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN--RT 741
                +++  +  S  +A+ER   +  F+ S +  G +    +      + +L  +  + 
Sbjct: 293 IYFMLLNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKD 352

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +P    W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +        
Sbjct: 353 HFIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRI-------- 404

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                      E +Q     E  I  + Y    + + + IP      + +A+++D   +I
Sbjct: 405 -----------EERQ-----EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVI 442

Query: 858 ESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  +   + +DQ  SL L+L               + + + L  +   A+  G+K+ YY+
Sbjct: 443 DVYAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSMYYI 502

Query: 904 RS 905
           R+
Sbjct: 503 RT 504


>gi|221067377|ref|ZP_03543482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
 gi|220712400|gb|EED67768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
          Length = 797

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 197/447 (44%), Gaps = 56/447 (12%)

Query: 368 LSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           L +CF+  V D   G        I+ AL + A   +  GG+G D++ +R  GA + GTN 
Sbjct: 79  LINCFVQPVADATNGFDTQGNPGIYTALSQAAETMRRGGGVGYDFSNLRPRGALVRGTNS 138

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G   F+ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ 
Sbjct: 139 NASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQKG----RWNNF 194

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + + FM+ V  +A W L        LH     + +I    + R+     + V++ 
Sbjct: 195 NVSVGVSNAFMQAVRDDAEWEL--------LHVASPSDAQIQAGAHRREDG---LWVYQS 243

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A  LW  ++   ++   P I F D  N  +   +   + ++N C E  L         
Sbjct: 244 QPARTLWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQPL----PPYGC 299

Query: 600 CNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           C+LG + +L  F    F      D +   + +   VR+LDNV+D     + + ++     
Sbjct: 300 CDLGPV-ILTRFVREPFTPQAFFDLEAFRAAVAVQVRMLDNVLDATVWPLPEQQREAQQK 358

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G  G   AL LL + YAS   ++ A+     +   A +ASVELA+E+G++  F  
Sbjct: 359 RRIGVGFTGLGDALILLGLHYASDAGLQQAEAIARNMRDAAYAASVELAREKGSFPLFNA 418

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772
             + +  F                     RLP  EL+  ++  G+RNS+ ++IAPT T+ 
Sbjct: 419 KQYLKSGF-------------------AKRLP-KELRADIRKHGLRNSHLLSIAPTGTVS 458

Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSGD 798
            A     S  I+P++   Y +   + D
Sbjct: 459 LAFADNASNGIEPAFSWTYTRRKRTAD 485


>gi|196229990|ref|ZP_03128854.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
 gi|196226316|gb|EDY20822.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
          Length = 159

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 101/165 (61%), Gaps = 11/165 (6%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSG+F   N  L+ EL+ R LWDE M++DLKY DGS+  I+R+P +LK+++ TAFEI P 
Sbjct: 1   MSGEFIRTNDHLLRELQNRGLWDEEMLADLKYFDGSVQQIDRVPAELKRLYKTAFEIAPT 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W+++ A+ RQKWIDQAQS NL+L E   +   F+YR+AW  GLKTTYYLR     ++ KS
Sbjct: 61  WILQCAAARQKWIDQAQSTNLWLAESDARTASFMYREAWERGLKTTYYLR-----TLNKS 115

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-----ECEVCQ 954
            +   +    A    +P    +S     SC+ +       CE CQ
Sbjct: 116 AIDSSNRDRRATTAPEPKRE-YSAEEKQSCSIEAMRNGGTCEACQ 159


>gi|38707873|ref|NP_944991.1| Ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage Felix 01]
 gi|33340476|gb|AAQ14827.1| putative ribonucleoside triphosphate reductase alpha chain
           [Enterobacteria phage Felix 01]
          Length = 744

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 184/805 (22%), Positives = 326/805 (40%), Gaps = 108/805 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59

Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              ++K+   Y+ +  R LL  + +E      K P   T           F + +E   +
Sbjct: 60  DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           A L  +  MD+   +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  
Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163

Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           FM    G+A+K  EK+ +       ++ Y  LS       TP L          +SC L 
Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D    +  A +    +     G+G      R +G  I     +  G +P+ K+   +
Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           +V  N+   R G+   +       +E+ L L+  T    +R ++M+ +    D F + V 
Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337

Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +  W LFS  +   L+D++      EF +A  +    A    +K  R++ A  + +  +
Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602
              + TG  +  F +  N  +P +    +  SNLC EI L     E         AV   
Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           G + L  LA     +   D+ A     A+ ++D+VID+  +     +      R++G+GL
Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L   ++ Y+S        E  E  S++   AS+ LA+ERG     K + + +G 
Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGW 570

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779
            P  +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +
Sbjct: 571 VPPKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             + P    +  K + +G+   +                                  +PD
Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652

Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895
             +LK ++  A++ID   +I+  +  QK+  QA S + Y+D    KK+       +++  
Sbjct: 653 YEELKYVYEIAWDIDTFDMIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712

Query: 896 ---GLKTTYYLRSRSATSVEKSTLK 917
              G+KT YYL SR    V KS L+
Sbjct: 713 NSVGMKTMYYLNSR--IGVGKSALQ 735


>gi|218681258|ref|ZP_03529155.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CIAT 894]
          Length = 441

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 177/379 (46%), Gaps = 28/379 (7%)

Query: 276 FDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKE 332
           F+ V    D  Y R F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +
Sbjct: 75  FNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD 134

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENA 391
              E  A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++    
Sbjct: 135 ---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSAL 191

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   Y
Sbjct: 192 QLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVY 251

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++
Sbjct: 252 LNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFELARNNEDMYLFSPYDVERVY 311

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   E  +  +  E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 312 GVPFTEISVTEKYREMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN 369

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + +               CNLGS+N+ A   +  F   
Sbjct: 370 PV--AGRISMSNLCSEILQVSEASDYNDDLSYKHLGKDISCNLGSLNIAAAMDSTDF--- 424

Query: 620 KLASTIRTAVRVLDNVIDI 638
               TI T++R L  V D+
Sbjct: 425 --GKTIETSIRALTAVSDM 441


>gi|269975272|gb|ACZ55496.1| ribonucleoside triphosphate reductase alpha chain [Staphylococcus
           phage SA1]
          Length = 744

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 184/805 (22%), Positives = 326/805 (40%), Gaps = 108/805 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59

Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              ++K+   Y+ +  R LL  + +E      K P   T           F + +E   +
Sbjct: 60  DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           A L  +  MD+   +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  
Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163

Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           FM    G+A+K  EK+ +       ++ Y  LS       TP L          +SC L 
Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D    +  A +    +     G+G      R +G  I     +  G +P+ K+   +
Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           +V  N+   R G+   +       +E+ L L+  T    +R ++M+ +    D F + V 
Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337

Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +  W LFS  +   L+D++      EF +A  +    A    +K  R++ A  + +  +
Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602
              + TG  +  F +  N  +P +    +  SNLC EI L     E         AV   
Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           G + L  LA     +   D+ A     A+ ++D+VID+  +     +      R++G+GL
Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L   ++ Y+S        E  E  S++   AS+ LA+ERG     + + + +G 
Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMQFTKYPEGW 570

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779
            P  +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +
Sbjct: 571 VPPKTANRKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             + P    +  K + +G+   +                                  +PD
Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652

Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895
             +LK ++  A++ID   LI+  +  QK+  QA S + Y+D    KK+       +++  
Sbjct: 653 YEELKYVYEIAWDIDTFDLIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712

Query: 896 ---GLKTTYYLRSRSATSVEKSTLK 917
              G+KT YYL SR    V KS L+
Sbjct: 713 NSVGMKTMYYLNSR--IGVGKSALQ 735


>gi|24943147|ref|NP_733909.1| ORF55 [Callitrichine herpesvirus 3]
 gi|13676698|gb|AAK38264.1|AF319782_58 ORF55 [callitrichine herpesvirus 3]
          Length = 802

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 168/675 (24%), Positives = 264/675 (39%), Gaps = 117/675 (17%)

Query: 287 YERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVA------------MGLALKET 333
           Y+R     YL     YD Y  +  +G    +P A+ MRVA            M LA+K  
Sbjct: 91  YDRLLGRGYLSALRYYDTYLNVTTDGVYESIPHAY-MRVAAFCASITLHFEGMRLAMKAM 149

Query: 334 EKEKRAV-----EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGA 386
                 +      F+  L+     CSTP L ++G R   L+SCF+ +  +  +       
Sbjct: 150 CPHLSDILSIFDYFFEHLTLQTVCCSTPILRSAGIRKQILASCFIMSPRMESEAAVNLAM 209

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++   L ++  G+G        +G    G +GK  G++  LK+ N      N   KR  
Sbjct: 210 MRDLGRLLQHKSGVG--------MGVTDFGRDGKHIGLL--LKMVNSHVEYHNYANKRPV 259

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           +V A++E WH  V +FL+ +    ++  R   + T   IP +F K   +   + W LF P
Sbjct: 260 SVAAFMEVWHSQVFKFLEAK--VPENPERCAGIFTGLCIPHMFFKLYKEKPWSFWHLFEP 317

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                L  LYG+EFE     Y R    G  K +  +   +L   ++    + G P+I  K
Sbjct: 318 QNAGRLESLYGEEFE---REYYRLIKEG--KSYGSVPIKSLMFSIVNSAIKAGSPYILLK 372

Query: 565 DPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINL---------------- 607
           + CN    +   G  + + NLC E+ L  S +E AVCNL S+ L                
Sbjct: 373 EACNEHYWRDLSGEAMSAGNLCAEV-LQPSRDEIAVCNLASVCLPRCLTGPLTTGPVHGL 431

Query: 608 -----------------------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                                          F    L   ++ AV +++  I     T E
Sbjct: 432 MGPERKSGHELLRGLQETYDPIEAVDLPTGDFSLKILRDAVQCAVFLVNCAIQAGSPTWE 491

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
               +     ++G+G+ G       L   Y  P +  +     E + F A+  S  +A+ 
Sbjct: 492 ARDVA-----SMGIGVQGLADVFSALGWHYTDPSSRALNSRIFEEMYFTALCTSNTIAEH 546

Query: 705 -RGAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            R  +S F  S +  G F     P     L  EV             W+ L  R+K  G+
Sbjct: 547 SRRMFSGFSRSKYASGWFHWHDWPDTITSLEPEV-------------WETLAGRIKEHGL 593

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            NS  +A+ PTA +A + GVS S  P + N   K     +    N      L+  D  +E
Sbjct: 594 FNSQFIALMPTAGVAQLTGVSDSFYPFFANASTKVTSKEEALRPNQTFWRHLRV-DHANE 652

Query: 819 AMISDLKYHDGSIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           A+    K        +E +P+ L+    I  TAF+     LI  +  R  ++DQ+QSL L
Sbjct: 653 AVRVGCK--------VEAMPEPLRTHYSIFKTAFDYPQEDLIRMSRDRAPFVDQSQSLTL 704

Query: 876 YLDEPSGKKLDFIYR 890
           +L E    +   + R
Sbjct: 705 FLKERDASRASMLVR 719


>gi|91776891|ref|YP_546647.1| ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
 gi|91710878|gb|ABE50806.1| Ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
          Length = 719

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 229/512 (44%), Gaps = 51/512 (9%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLTT- 375
           + RVA  LA  E  +EKR++ F   L +     + +     N+G +   P  S+   T  
Sbjct: 52  YKRVARALADVEETEEKRSLWFEKFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 111

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D + GI   + E  +  K   G+G +++ +R  GA + G    + G + F+ + + 
Sbjct: 112 GIVEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 171

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   FM+ V
Sbjct: 172 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREAG----RLRQFNLSTLITREFMEAV 227

Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKIS 541
             +A W L  P           ++ D H +  +E+ +  +   R++D G++  +V++ I 
Sbjct: 228 KTDAEWKLAFPVTAREAEQDKLDLDDEHAVVWREWPVKDKYLTRESD-GKVACRVYKTIK 286

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW  +++  ++   P     D  N  +   +   + ++N C E  L         C 
Sbjct: 287 AQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWYCENIRATNPCGEQPLPP----YGACL 342

Query: 602 LGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGSINL       F +   FD+D+    +    R+LDNV++IN   +++ +      R  
Sbjct: 343 LGSINLTKFVREPFTDKAYFDWDEYREVVAIFTRMLDNVVEINGLPLQQQRDEIARKRRH 402

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YS 709
           G+G +G  S L +L + Y   ++++  +E  + ++       V+LA+E+G        + 
Sbjct: 403 GMGYLGLGSTLTMLRMKYGEADSLQFTEEVTKVMAEVGWEVGVQLAEEKGPAPIMEEEFE 462

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMA 765
                L  +     D I L  +V+ ++ M R SR     P   L+KR+   G R S+  +
Sbjct: 463 ITPDLLSKRPEMAKDGIKLGDKVKGKVLMGRYSRYLQQFP-AALRKRIAETGARFSHHSS 521

Query: 766 IAPTATI----ANICGVSQSIDPSYQNLYVKS 793
           IAPT TI    AN    S  I+PS+ + Y ++
Sbjct: 522 IAPTGTISLSLAN--NASNGIEPSFAHHYSRN 551


>gi|71835949|gb|AAZ42350.1| ribonucletotide reductase large subunit [Caenorhabditis remanei]
          Length = 214

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 123/220 (55%), Gaps = 11/220 (5%)

Query: 592 SSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           S+ +E AVCNL SI L  +     +FD+ KLA   +   + L+ +ID+N + +E+A+ SN
Sbjct: 3   SAPDEIAVCNLASIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSN 62

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IGLG+ G      L+  P+ S +A ++     E I + A+ AS ELA+  G YS+
Sbjct: 63  MRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPYST 122

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++GS   +G    D  G+            T +  W  L+K++ T G+RNS  MA  PTA
Sbjct: 123 YEGSPVSKGQLQFDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMPTA 172

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + A I G ++SI+P   N+Y +  +SGDF +VN  ++ +L
Sbjct: 173 STAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDL 212


>gi|83642897|ref|YP_438185.1| ORF61 [Ovine herpesvirus 2]
 gi|61971011|gb|AAX58096.1| ORF61 [Ovine herpesvirus 2]
          Length = 785

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 144/611 (23%), Positives = 255/611 (41%), Gaps = 79/611 (12%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSG 398
           F++ L+     C+TP + ++GTRH  L+SCFL + PD   +       LQE   L     
Sbjct: 169 FFSPLAQQLVCCATPIMRSAGTRHANLASCFLMS-PDLSSEANTTTALLQELTSLLSVKS 227

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G D T          G  GKS  V   L + +      N    R  +V AY+E WH  
Sbjct: 228 GVGCDVTSF--------GHGGKS--VQSCLSLIDAQVEYFNDQNPRPVSVAAYMEVWHSQ 277

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLFSPDEVSDLHDLYGK 516
           ++EFL ++    ++  R   +     IP LF  +     N  W LFSP++  +L  LYG+
Sbjct: 278 IQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPEDAGNLPHLYGE 335

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF+  YE   R     E +   ++   +L   ++  + +TG P+I +KD CN    ++  
Sbjct: 336 EFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNAHHWKEMR 390

Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------------------------ 611
           G  + S+NLC E+ +     + + CNL ++ L                            
Sbjct: 391 GQAIASANLCAEV-IQYPGRDVSTCNLANVCLPMCLISTPVDPRAPSGQNYSGEVVKSEA 449

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +N  F    L   +  AV +++  ID      E  ++     R++G+G+ G       +
Sbjct: 450 VSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRGQR-ERSMGIGVHGLADVFAEM 508

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSI-G 727
              Y  P A  +  +  E + + A+  S  + +  G   +  ++ S   +GVF  +   G
Sbjct: 509 GYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSRGVFHWEGWDG 568

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +   + +           W  L +     G+ NS  +A+ PT   + + G ++S  P + 
Sbjct: 569 VKLSIPEH---------EWSSLARSCVHSGVYNSQFVALMPTVGSSLLTGYAESYYPFFA 619

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA- 846
           N+  K +   +    N      + + DL    +           G++  +P  L++ ++ 
Sbjct: 620 NVSSKVSSKEEIMKPNVTFWKRVSEEDLHTVRVYG---------GDVALLPSPLREKYSL 670

Query: 847 --TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT- 900
             +AF+      +  A  R  ++DQ+QS + YL E    S K L  +    +  GLKT  
Sbjct: 671 FLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAHGLKTIM 730

Query: 901 YYLRSRSATSV 911
           YY + +  +++
Sbjct: 731 YYCKVKKQSTM 741


>gi|212550980|ref|YP_002309297.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549218|dbj|BAG83886.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 867

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 172/706 (24%), Positives = 294/706 (41%), Gaps = 124/706 (17%)

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALK 331
           M F+ VY ++ L Y   F  + L  ++  D+Y L  N G   E  P     R+A  +   
Sbjct: 1   MTFEEVYKSS-LDY---FCGDELAAKVFVDKYALKSNKGEYFESTPNEMHQRIAREIVRI 56

Query: 332 ETEKEKRAVEFYNLL---SSFHFMC-STPTLFNSGTRH--PQLSSCFLTTVPDDLYG-IF 384
           E +     +   N+L   S F+++      +F  G  +    LS+CF+     D YG I 
Sbjct: 57  EQKYPNPILTEKNILEVISDFNYLIPQGGNMFGIGNSYQLTSLSNCFVIGNRTDSYGGIM 116

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
              +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R
Sbjct: 117 RTDEEQIQLMKRRGGVGHDLSHIRPRGSPVNNSAITSTGMVPFMERYSNSTREVAQEGRR 176

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA+   +   H ++E F+D +   G    +    N +  + D FM+ V  N  +     
Sbjct: 177 -GALMLSMSVEHPEIESFIDAKIEEG----KVTGANISVKLTDEFMRAVESNRSFI---- 227

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                      + F I  EN +         + ++I A  LW K++   +++  P + F 
Sbjct: 228 -----------QRFPIDSENPQ---------IIKEIDAKDLWNKIIHNAWQSAEPGVLFW 267

Query: 565 DP--------CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613
           D         C I S     G V S+N C EI L         C L +INL ++      
Sbjct: 268 DTILRESIPDCYIDS---GFGTV-STNPCGEIPLCPYDS----CRLLAINLYSYVKQPFK 319

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTI------------------------EKAK 647
              +FD+D     +  A R++DN++D+    I                        EK +
Sbjct: 320 KEAEFDFDLFEEHVALAQRMMDNIVDLEVEKIDAILMKIISDYESDEIKHTEQLLWEKIR 379

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R IG+G+      L  L   Y + EA   A+   + ++     ASVE+A+ERGA
Sbjct: 380 HKTLIGRRIGIGITAEGDMLAALGFRYGTEEATNFAERIQKVLALSVYRASVEVAKERGA 439

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F   L     F    I  L EV  +L  +             ++  G RN  C+ IA
Sbjct: 440 FEIFNIELEKNNPF----IHRLKEVDSQLIED-------------MQQFGRRNIACLTIA 482

Query: 768 PTATIANICGVSQSIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           PT T + +   +  I+P +  +Y    K N S + T ++   V+E+   D W E  +   
Sbjct: 483 PTGTTSLMSQTTSGIEPVFLPVYKRRRKVNPSDEITKID--FVDEMG--DSWVEYTVFHH 538

Query: 825 KY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           K+        +  +    +R  D L        +T+ ++D +  ++   R Q+W+D + S
Sbjct: 539 KFVKWMEVQGYPTTRKYAQREIDALVAKSPYYKSTSNDVDWLQKVKMQGRIQRWVDHSIS 598

Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + + L   + ++L +++Y +AW  G K     R  S   V  +T K
Sbjct: 599 VTINLPNETKEELVNYLYIEAWKSGCKGCTVYRDGSRNGVLVTTSK 644


>gi|253583701|ref|ZP_04860899.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834273|gb|EES62836.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 754

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 145/578 (25%), Positives = 261/578 (45%), Gaps = 83/578 (14%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
           E   ++++  F+ +   L N G     R    S+C++   P+D L  IF   ++ A    
Sbjct: 42  ELKEMIANKEFIFAGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYS 101

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           Y GG G D + +R  G+ ++ +   + G I F+++ N T   + Q G+R GA+   ++  
Sbjct: 102 YGGGCGVDISKLRPRGSEVNNSAKHTTGSISFMELYNLTTDIIGQKGRR-GALMISIDVN 160

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DV EF+ ++     D  +    N +  +   FMK V +   +                
Sbjct: 161 HPDVSEFISIK----SDLNKIQKANISVRVDANFMKAVIEGMQFV--------------- 201

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572
            EF +         D GE+ V ++I A  L++++    ++   P I F D     N+ S 
Sbjct: 202 TEFLVE--------DTGEV-VTKEIDARKLFKELARQNWKFAEPGILFWDRISKWNLLSE 252

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            +       +N C E  L +       C LGS+ L       +F++D+LA  ++ +V+ L
Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPTFVEGKEFNFDRLAKVVQKSVKAL 307

Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++V+D  +  H +E+ ++S    R IGLG++G    L  + + Y SPE++E  D+  + I
Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGILGVGDLLIKIGMKYGSPESLEFCDKIAKVI 367

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +A+ AS  LA++ GAY  +K           D +     ++ E  +   S     E  
Sbjct: 368 VDNALKASALLAKDFGAYPKYKA----------DKV-----LKSEFLLENASI----ETL 408

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + ++  G+RNS  + IAPT +I  +   S  I+P++   YV+   S             L
Sbjct: 409 ELIEKYGLRNSQLLTIAPTGSIGTMLETSTGIEPNFAFSYVRKTES-------------L 455

Query: 811 KQRDLWDEAMISDLKYH--DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
              D++ +  I   K +  + +I + E    DL +   TA  ++P   I+     QK ID
Sbjct: 456 HGEDVFYKVFIPIAKKYMEENNITDEE----DLPEYFVTAQSLNPYDRIKMQGVWQKRID 511

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + S  + L ++ S ++++ +Y +AW  GLK     R+
Sbjct: 512 ASISSTINLVNKVSVEEVEKLYLEAWKNGLKGMTIYRA 549


>gi|83816105|ref|YP_444446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
 gi|83757499|gb|ABC45612.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
          Length = 894

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 139/549 (25%), Positives = 230/549 (41%), Gaps = 78/549 (14%)

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           ND  +E + + E  G    Y        G+   +P  ++ R A  +A  E + +     F
Sbjct: 44  NDDIFETEISEEVYGQNYQY--------GTDDRVPDTWY-RNARAMAQVEDDTDMWTQRF 94

Query: 343 YNLLSS-------FHFMCSTPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQE 389
           Y LLS        F F        N+GT      L +CF++       D +  I   L  
Sbjct: 95  YQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTR 154

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK------ 443
            A +    GG G     +R  GA I G    + G +  L V N  A  +  G        
Sbjct: 155 QAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRD 214

Query: 444 ------RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                 RKGA    +  WH D+ EF++ ++  G    R H  N +  I D FM+ V  + 
Sbjct: 215 DVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG----RLHKFNMSVLITDEFMEAVKNDD 270

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS--------AVALWRKM 549
            W L  PD   +  + Y + ++   + Y+ +   G +K +   +        A  +W ++
Sbjct: 271 TWALRFPD-YENEKEFYKQHWDGNLKAYQEKG--GTVKTWTDPATGEPAVYEAREIWNRI 327

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-- 607
           +   +    P + F D  N  +   +V  ++++N C E  L        VC LG++N+  
Sbjct: 328 MDSTYNRNEPGVIFVDTINKENNLGYVEHINATNPCGEQVLPVG----GVCLLGNLNVTQ 383

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           L        DYD +   +  AVR LDNV D++   +E+ +++    R IGLG  G  SAL
Sbjct: 384 LVDREAGTIDYDLVDDLVPLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSAL 443

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            ++   Y S E   +  E  E ++  A  AS  LA+E+GA+  F                
Sbjct: 444 MMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEKGAFPLFD--------------- 488

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
                +DE L+     RL  D+ K+ +  +G+RNS+ ++I PT   + +    S  I+P 
Sbjct: 489 -----KDEYLSSPFVQRLS-DKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPV 542

Query: 786 YQNLYVKSN 794
           + + Y++++
Sbjct: 543 FMHSYIRTS 551


>gi|282877838|ref|ZP_06286650.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
 gi|281300049|gb|EFA92406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
          Length = 861

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 170/694 (24%), Positives = 299/694 (43%), Gaps = 116/694 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLAL--KETEKEKRAV 340
           LKY   FA + L  ++  ++Y +  +   I  + P+    R+A  +A   K+ +    A 
Sbjct: 17  LKY---FAGDELAARVWVNKYSMKDSFGNIYEKSPEDMHCRIANEIARIEKKYKNPMSAR 73

Query: 341 EFYNLLSSFHFMCSTPTLFNS-GTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394
           E ++LL  F ++    +     G  H    LS+CF+  +  D   YG I    +E   L 
Sbjct: 74  EIFDLLDHFKYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLM 133

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 134 KRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 192

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM+  T +                 Y
Sbjct: 193 KHPDSEAFIDAKMTEG----KVTGANVSVKIDDAFMEAATSDKP---------------Y 233

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            ++F +         D  E  V R+ISA ALW K++   +++  P + F D     S P 
Sbjct: 234 VQQFPV---------DGDEPLVKREISAKALWEKIVHNAWKSAEPGVLFWDTITRESIPD 284

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTI 625
            +  +     S+N C EI L         C L SINL ++       +  FD DK    +
Sbjct: 285 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVVHPFTKDAYFDMDKFRKHV 340

Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661
           + A R++D+++D+                          H  EK K  +   R  G+G+ 
Sbjct: 341 QIAQRIMDDIVDLELEKIDRIMQKIQQDPQSDEVKGSEYHLWEKIKHKSSQGRRTGVGIT 400

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  + + Y +PEA E +    + ++  A  +SV +AQERGA++ F  S      F
Sbjct: 401 AEGDMIAAMGLRYGTPEATEFSVNVHKNLALSAYRSSVTMAQERGAFAVFDASREKNNPF 460

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                         L +    +  + +L+K     G RN  C+ IAPT T + +   +  
Sbjct: 461 L-------------LRIKEADQQLYADLQK----YGRRNIACLTIAPTGTTSLMTQTTSG 503

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD-----GSIGNIE 835
           I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+ +     G     +
Sbjct: 504 IEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMNVNGIDSTKK 561

Query: 836 RIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
              +++ K+        ATA ++D +  ++     QKW+D + S+ + L     + L + 
Sbjct: 562 YTQEEIDKLVAQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNR 621

Query: 888 IYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLK 917
           +Y +AW  G K  T Y   SR+    SV KS  K
Sbjct: 622 LYVEAWKSGCKGCTIYRDGSRAGVMISVSKSEKK 655


>gi|189490616|ref|YP_001957186.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
 gi|164609681|gb|ABY63290.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
          Length = 764

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 198/820 (24%), Positives = 331/820 (40%), Gaps = 109/820 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205
           I+  DGT   FN+ +     E     L+D V    ++ ET + + + +S    + ALI  
Sbjct: 5   IIKLDGTQEPFNAAKANRWCEWGTENLKDKVDWSSIVMETIQTLPETVSSQAFQMALI-- 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             TL  +  ++     R     + + +  T      KA H  MQ           ++G+ 
Sbjct: 63  ENTLSHRTWSHYLFAGRLYAVWIHKHLYGTDGIPTVKALHTRMQ-----------KDGLM 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMR 323
            +L + +    D + +   +K++ DF   +  L  +  +Y L   + G+  E PQ  ++R
Sbjct: 112 VKLKYNTQ---DYLKIEKFIKHDLDFEQPHFALHQIRKKYALGNRVTGAEYESPQFTYIR 168

Query: 324 VAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM LA  E +  +  V  +FY L +       TP   N GT H   +SC L  V D+  
Sbjct: 169 MAMALAENEPKATRLQVVRDFYELFAYKKLSAPTPNYINLGTSHRGFASCCLFAVGDNGT 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +         + + S G+G +    R +G  + G      G   +      + VA  Q 
Sbjct: 229 SLALGNYIGDKMTQMSAGIGVN-IMTRAVGDAVRGGLFAHHGKKKYYDAMGKSIVANVQA 287

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GAV  + E++  +VE    LR       RR  DM+ A      F K+   N     
Sbjct: 288 G-RGGAVTCFFESFDQEVEMIQGLRNPLSTPDRRNRDMHFAMLTNRFFAKKAASNEQIFA 346

Query: 502 FSPDEVSDLHD-LYGK---EFEIAYENYERQADRGEIKVFRK--ISAVALWRKMLTMLFE 555
           F+P    DLH+  YGK   EF   YE YE+       + F K  +SA  + R+ L    E
Sbjct: 347 FNPYTAPDLHEAFYGKDIEEFIRLYEKYEKD------ESFTKHWMSARDILRRSLKEAQE 400

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVC 600
           TG  ++   D  N  +P   +  +HSSNLC EI   +S                 E A C
Sbjct: 401 TGVAYVGQIDEMNRHTP--FLDPIHSSNLCMEIAEPTSPYYEMEDLVSREDHGRGEIATC 458

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           +L ++++      N  +Y+K+      A++++D  I  + + I   + +     + G+G+
Sbjct: 459 SLAAVSV--ENIENDKEYEKVC---YYALKMIDYCILNSTYVIPHLEFTAKQRMSAGVGM 513

Query: 661 MGFQSALHLLHIPYASP----EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           MG  + L    + Y S     E   IA+  M F+    I AS+ +++ERG       + W
Sbjct: 514 MGLATHLAKNGLDYTSNAGKREIHWIAERHMYFM----IKASIAISKERGLAPWIHKTKW 569

Query: 717 DQGVFPIDSIGLLAE-VRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIAN 774
             G  PID+     + + D    +      W++L+   V   G+ +S  +A  P  + + 
Sbjct: 570 PAGWLPIDTYQRAVDNIIDPKGSSFDYTYNWEKLRAEVVANGGIAHSVLIAYMPGESSSK 629

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
             G + SI P  +    K++ +           N L               Y     G  
Sbjct: 630 ALGGANSIYPVRRLTLSKNDQN-----------NHL---------------YWAAPYG-- 661

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKL--DF 887
               DD    +  A++I    LI+  +  QK+ DQ  S + Y      +E    +L  D+
Sbjct: 662 ----DDPSVKYQFAWDIPTKDLIDCYAIFQKFTDQGISADFYRRIVGTEEIDSNELLKDY 717

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLK-GVDGKLNAV 926
            Y     MG+KT YY  + +  ++    ++  +D   NA 
Sbjct: 718 FYMVK--MGMKTRYYFNTETTANLSLEAMESAIDNSGNAA 755


>gi|323448023|gb|EGB03927.1| hypothetical protein AURANDRAFT_6442 [Aureococcus anophagefferens]
          Length = 212

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 122/220 (55%), Gaps = 14/220 (6%)

Query: 592 SSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           ++S+E AVC L SINL  H         FD+ KL  T     + L+ V+D+N + +E+AK
Sbjct: 3   TASDEIAVCTLASINLTVHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAK 62

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            SN  HR +G+G+ G   AL  L  PY S +A  I  +  E I F A+ AS++LAQE G 
Sbjct: 63  SSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQELGP 122

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y S+ GS   QG+F  D    L  V+       + R  W+ L+ R+   G RNS  +A  
Sbjct: 123 YDSYAGSPTSQGLFQFD----LWNVKP------SDRWDWEGLRARLGEHGCRNSLLLAPM 172

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           PTA+ A I G ++S +P   N+Y +  ++G+F VVN +L+
Sbjct: 173 PTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLL 212


>gi|15678679|ref|NP_275794.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621734|gb|AAB85157.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 703

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 47/310 (15%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+NL      +  +++KL  TI  AV  LDNVID+N + +   ++     R IGLG
Sbjct: 411 CNLGSVNLSLMVGPSGINWEKLRRTIHVAVHFLDNVIDVNSYPLRPVEEMTLRTRKIGLG 470

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY S  A+E+A   M FIS  A  AS+ELA+ERG++  FKGS+WD  
Sbjct: 471 VMGFADMLIKLGIPYNSVAALEVAGRVMSFISSEARRASMELARERGSFPEFKGSIWDIQ 530

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F                                    MRN+    IAPT +++ I G S
Sbjct: 531 GFEC----------------------------------MRNATLTTIAPTGSLSIIAGTS 556

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSF---LVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             I+P +   + ++ +   F  ++     +   L +R L  EA+ S      GS+  +  
Sbjct: 557 SGIEPLFAVSFTRNILGRSFHELHPLFKTMAGRLDKRSL--EAIES-----RGSLRGVPG 609

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWL 894
           +P  ++++  TA EIDP++ ++  +  Q+++D A  +++NL  D  S   ++ ++R A  
Sbjct: 610 VPARIRRLFVTAHEIDPVFHVKMQAAFQRYVDNAVSKTVNLPADS-SPADVERVFRAAHE 668

Query: 895 MGLKTTYYLR 904
           +G K     R
Sbjct: 669 LGCKGVTVYR 678



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 145/324 (44%), Gaps = 47/324 (14%)

Query: 298 LQILYDRYFLHINGSRI-EMPQAFFMRVAMGLA-LKETEKEKRAVE---FYNLLSSFHFM 352
           L++L +RY L   G  + E P+  F RVA  +A   E   +  AV    FY+++ +  F+
Sbjct: 9   LKVLEERYLLRGEGGEVVETPEEMFRRVARAVASADEAYGDDPAVAEEAFYSVMGNLEFL 68

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QLS+CF+  V D +  IF +L++ A++ K  GG+G  ++ +R  G 
Sbjct: 69  PNSPTLMNAGTPINQLSACFVLPVEDSIDSIFSSLRDMAIIHKSGGGVGFSFSRLRPRGD 128

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+++ +     + QGG+R+GA    L   H D+  F+D +   G  
Sbjct: 129 IVASTMGVASGPVSFMRIFDVAVDVIKQGGRRRGANMGVLHVSHPDIFSFIDAKSREGPL 188

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R    + N +  +PD FM              D   DL +    E            D  
Sbjct: 189 R----NFNLSVAVPDEFMD-------------DRPVDLINPRNGEV----------VDSV 221

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E +V  K    A WR        +G P I F+D  N  +P   +G + ++N C       
Sbjct: 222 ESRVILKRIVEAAWR--------SGDPGILFEDRINRYNPTPQLGRIEATNPCV------ 267

Query: 593 SSEETAVCNLGSINLLAHFANNQF 616
            S +T V   G    +A      F
Sbjct: 268 -SGDTIVMTSGGPRTVAELEGKPF 290


>gi|332830258|gb|EGK02886.1| hypothetical protein HMPREF9455_01136 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 848

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 170/713 (23%), Positives = 290/713 (40%), Gaps = 119/713 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + + +  FD  Y A  L Y   F  + L  ++  ++Y L      I  + P+    R+A 
Sbjct: 1   MAQKVYTFDEAYNAA-LNY---FNGDELAAKVWVNKYALKDAAGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEKRAV--EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PDD 379
            +   E++ EK     E Y+L   F ++    S  T   +  +   LS+CF+  +  P D
Sbjct: 57  EIGRIESKYEKGLTNKELYDLFDHFKYIVPQGSPMTGIGNDFQIASLSNCFVIGLNGPSD 116

Query: 380 LYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            YG I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+R GA+   +   H D E F+D +   G    +    N +  I D FM+ V   + 
Sbjct: 177 AQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDGSK 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P                         D       + I A  LWRK++   +++  
Sbjct: 232 YTQQYP------------------------IDSSNPTTVKDIQATELWRKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S P  +  +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIKESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEK 645
                 FD++  +  +  A R++D++ID+                          H  EK
Sbjct: 324 FKDDAHFDFELFSKHVGLAQRIMDDIIDLETEKIDKILQKIDDDPETDEVRWPERHLWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R  G+G+      +  + + Y + EA   A+E    ++  A  +SVELA+ER
Sbjct: 384 IRTKTLQGRRTGVGITAEGDMIAAMGLRYGTEEATAFAEEVHRVLAVAAYRSSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F      +  F    I  LAEV  +L              K ++  G RN  C+ 
Sbjct: 444 GAFEIFDFKREKKNPF----INRLAEVDPQLI-------------KDMEKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           +APT T + +   +  I+P +  +Y  +  ++ +   V    V+E    D W+E ++   
Sbjct: 487 VAPTGTTSLMTQSTSGIEPVFMPVYKRRRKVNPNDKEVRVDFVDE--NGDSWEEYIVFHH 544

Query: 825 KY------------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           K+               +   +E +  +     AT+ ++D +  ++   R QKW+D + S
Sbjct: 545 KFVTWMESKGYPTSKKYTNEEVETMVAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSIS 604

Query: 873 LNLYLDEPSGKKLDFI---YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVD 920
           + + L  PS    D +   Y +AW  G K  T Y   SR+   V     K  D
Sbjct: 605 VTINL--PSDVSEDLVNDLYIEAWKSGCKGCTVYRDGSRAGVLVAADNKKQAD 655


>gi|329960252|ref|ZP_08298694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
 gi|328532925|gb|EGF59702.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
          Length = 845

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 165/685 (24%), Positives = 293/685 (42%), Gaps = 111/685 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E +N
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNGLSSEELFN 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+   +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLADSFMQAAIEGKPYTQQYPID------------ 239

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576
                         E+ VF+K I A ALW+K++   +++  P + F D     S P  + 
Sbjct: 240 -------------AEVPVFKKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYA 286

Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
            + +   S+N C EI L         C L +INL ++  N       FD++     +  A
Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFEKHVSLA 342

Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQ 664
            R++D++ID+    IE+           +   HT R +              G+G+    
Sbjct: 343 QRIMDDIIDLELEKIERIMEKIDSDPECEDVKHTERILWQKIYKKSGQGRRTGVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E ++   + ++ +A  +SVE+A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFSERVHKAVALNAYRSSVEMAKERGAFEIYDTEREKNNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -INRLREADPEL---------YEEMKK----FGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834
            +  +Y  +  ++ + T V+   ++E    D ++E ++   K         Y+       
Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ 563

Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890
           E +   + K     AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y 
Sbjct: 564 EEVDAMVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYI 623

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
           +AW  G K     R  S + V  ST
Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648


>gi|167764850|ref|ZP_02436971.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
 gi|167697519|gb|EDS14098.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
          Length = 845

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 174/703 (24%), Positives = 292/703 (41%), Gaps = 117/703 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFG 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+                       GK F
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAID-------------------GKPF 232

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
               + Y   AD    K  ++ISA  LW+K++   +++  P + F D     S P  +  
Sbjct: 233 ---VQQYPIDADEPLFK--KEISATDLWKKIVHNAWKSAEPGVLFWDTILRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD+D     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQ 343

Query: 630 RVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQS 665
           R++D++ID+    IE                        K  K +   R  G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E A++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFAEKVHQTVALSAYRSSVEMAKERGAFEVYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISDLKYH---DG 829
           +  +Y +        +N+  DF          ++V   K    W +A   D   H   D 
Sbjct: 507 FLPVYKRRRKVNPNDANVHVDFVDETGDAFEEYIVFHPKFV-TWMQAQGYDPAKHYTQDE 565

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFI 888
               +++ P       AT+ ++D +  ++   R QKW+D + S+ + L     ++L + +
Sbjct: 566 VDALVQKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRL 621

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           Y +AW  G K     R  S + V  ST K  D K    P   P
Sbjct: 622 YVEAWKSGCKGCTVYRDGSRSGVLISTKK--DKKEELPPCKPP 662


>gi|319899891|ref|YP_004159619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
 gi|319414922|gb|ADV42033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
          Length = 845

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 163/685 (23%), Positives = 295/685 (43%), Gaps = 111/685 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E +N
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEIARIEAKYPNALSSEELFN 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL+ F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+   +   +T   P + ++         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDSFMQAAIEGKPYTQQYPIDAAE--------- 242

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQ 574
                            +F+K I A ALW+K++   +++  P + F D     ++    +
Sbjct: 243 ----------------PIFKKEIDASALWKKIVHNAWKSAEPGVLFWDTILRESVPDCYE 286

Query: 575 HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
            +G    S+N C EI L         C L +INL ++  N       FD+D     +  A
Sbjct: 287 DLGYRTISTNPCGEIPLCPYDS----CRLLAINLYSYVINPFKSDAYFDFDLFKKHVALA 342

Query: 629 VRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQ 664
            R++D++ID+    IE                        K  K +   R  G+G+    
Sbjct: 343 QRIMDDIIDLELEKIERIMKKIDSDPEDEEVKRTELSLWQKIYKKSRQGRRTGVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEIYNTEREKDNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834
            +  +Y  +  ++ + T V+   ++E    D ++E ++   K         Y+       
Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ 563

Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890
           E I   ++K     AT+ ++D +  ++   R QKW+D + S+ + L     ++L + +Y 
Sbjct: 564 EEIDTMVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRLYV 623

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
           +AW  G K     R  S + V  ST
Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648


>gi|229166286|ref|ZP_04294045.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617231|gb|EEK74297.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 462

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 224/487 (45%), Gaps = 61/487 (12%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHP 559
           +P  V   +  +  + +I  E Y+      ++K  +K   ISA  +  K+  +  E+G+P
Sbjct: 62  APYTVFKEYGKHLDDIDID-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYP 118

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINL 607
           ++ FK   N + P + +G V  SNLCTEI        +N    E  +     CNLGS+N+
Sbjct: 119 YLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNI 178

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    N +   + + + +     V D  I  N  T++KA    H+   +GLG M     L
Sbjct: 179 VNVMENKEIR-EAVHAGMEALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYL 234

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----P 722
               I Y S EA E A      +++++I  S+E+A+E+G  +  F  S +  G +     
Sbjct: 235 AKNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYE 294

Query: 723 IDSIGLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 + E   +L   ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + 
Sbjct: 295 TTDYSPVTETVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATS 354

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P                     +V++++ R   +      + Y          +  D
Sbjct: 355 SVMP---------------------IVSQIESRTYANATTYYPMPY----------LSKD 383

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
               + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+
Sbjct: 384 TFWYYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKS 443

Query: 900 TYYLRSR 906
            YY R+R
Sbjct: 444 LYYTRTR 450


>gi|288553354|ref|YP_003425289.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288544514|gb|ADC48397.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 857

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 171/688 (24%), Positives = 276/688 (40%), Gaps = 129/688 (18%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRH 365
           IE P   F      R A GLA  E +  +R     +FY+ L + +F+ +   L+ +G + 
Sbjct: 122 IEKPLELFYEQIAKRNATGLASVEEDAARRQESFEQFYSELVNMNFIPAGRVLYGAGAKT 181

Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +C++   V D   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 182 DVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 241

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472
            + +L         V QGG R+GA    L  WH D+ EF+            L + T D+
Sbjct: 242 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRFLLEQTNDE 301

Query: 473 RRRTHDMNTANWIP---------------------DLFMKRVTQNAGWTLFSPD--EVSD 509
           + R       ++ P                       F  +V Q A   L +    +V++
Sbjct: 302 QIRRLVKEKLSFTPLSPVEEAMYQGIVNFRNVEGQGGFDTKVIQEAEDKLMTGGTYKVNN 361

Query: 510 LHDLYG--------KEFEIAYENYERQADR----------------------GEIKVFRK 539
              L G        KEF  A EN E  A R                      G+++ +R+
Sbjct: 362 PEFLTGANISITLTKEFMEAVENDEEYALRFPDVENYTAEEMESYNETWHEIGDVREWRE 421

Query: 540 ----------ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588
                     I A  LW  +      +  P I F D  N  +  +  G  V ++N C E 
Sbjct: 422 MGYGVRTYRLIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQ 481

Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            L   S    VCNL +INL  +A       ++DKL  T+   VR+ DNVID   + +E  
Sbjct: 482 PLAPYS----VCNLAAINLAEMADKETKTVNFDKLKRTVEVGVRMQDNVIDATPYFLEDN 537

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            K     R +GLG+MG    L      Y S +  ++ D+  E I+  A   S+ELA+E+G
Sbjct: 538 TKQAKGERRVGLGVMGLHDLLIYAETVYGSEKGNQLVDQVFETIATTAYRTSIELAKEKG 597

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           ++    G   ++             +R+  +      ++P D +++ V   G+RNS+ + 
Sbjct: 598 SFPYLIGQNEEE----------TKALREAFINTGYMKKMPED-IREGVLAYGIRNSHLLT 646

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P +   Y +S   G F  V + +V E              L 
Sbjct: 647 VAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAGIVEEY-------------LN 693

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--- 882
            H       E   D+L +   +  E+ P    +     Q+W+D   SL+  ++ P G   
Sbjct: 694 SHP------EASADELPEWFISTMELSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTV 745

Query: 883 KKLDFIYRQAWLMGLK--TTYYLRSRSA 908
           +++  +Y + +  G K  T Y   SR A
Sbjct: 746 EQVQAVYERLYRGGAKGGTVYVDGSRDA 773


>gi|226355314|ref|YP_002785054.1| ribonucleoside-diphosphate reductase [Deinococcus deserti VCD115]
 gi|226317304|gb|ACO45300.1| putative ribonucleoside-diphosphate reductase [Deinococcus deserti
           VCD115]
          Length = 996

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 150/590 (25%), Positives = 243/590 (41%), Gaps = 100/590 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428
           VPDD+ GI GA ++ A  AK S     D + +R  GA I G+ G S G + FL       
Sbjct: 215 VPDDMAGIIGAARKVAEDAKLSLEPRIDLSSMRPEGAPIKGSGGTSSGPVSFLLEIFDNF 274

Query: 429 -KVANDTA-----------------VAVNQGGKRKGAVCAYLETWHIDVEEFL---DLRK 467
            + AN  A                   V QGG R+GA  A +   H DV +FL   DL +
Sbjct: 275 LEWANRGAEQSGPINTLRFVYAPVLRVVRQGGTRRGAGMATISIEHPDVLDFLTAKDLDR 334

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE- 526
              +    T   N +  +   F   +     W + +  EV   + L  +E + +    E 
Sbjct: 335 EAAEGDIST--FNISILVSSAFWDTLQAGGVWPVAA-QEVPGKYYLARQEGKFSGTLPEL 391

Query: 527 ---RQADRGEIKVF------RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
               + D   + V+        I A  LW ++    + TG P + F D  N  S  +++G
Sbjct: 392 PVRAEDDARGVPVYTLRGGKTGIPAQWLWNEIAQHAWSTGEPGLIFNDRVNEFSALKNLG 451

Query: 578 V---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               + S+N C EI L         C+LG+INL A+   + FDY    + +RT VR LD+
Sbjct: 452 ARYEIRSTNPCGEIPLTVGEP----CDLGAINLAAYVKGSDFDYPTFRADVRTCVRFLDD 507

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+D+N   +E  + ++   R +GLG+MG   AL  + + Y +    +   E M  +   A
Sbjct: 508 VLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKMGLRYDNEAGRQAISEIMGALRDEA 567

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++ S  L QERG Y  ++                              R P      +V 
Sbjct: 568 VAESERLGQERGVYPVYE------------------------------RHP-----GKVP 592

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV------- 807
               RN   + +APT T + + GVS  I+P +     +   S    +++   V       
Sbjct: 593 HAPRRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLSSYP 652

Query: 808 --NELKQRDLWDEAMISD-LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
             + + Q D WD   +++ +  + GS+  +  IPD L+++   A +I P+  +      Q
Sbjct: 653 PASGMAQGDGWDWDKVTEAVSENHGSVVGLPFIPDALQQVFVCAHDIKPLDHVRMQGAVQ 712

Query: 865 KWID----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
           +  D     A SL+  ++ P+   +  +   Y +A+  G K     R  S
Sbjct: 713 QAFDAEGFAANSLSKTINLPNNATVQDVQDAYTEAYRTGCKGITVYRDGS 762


>gi|332981533|ref|YP_004462974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
 gi|332699211|gb|AEE96152.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
          Length = 1112

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 155/315 (49%), Gaps = 43/315 (13%)

Query: 600 CNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGSINLL+          + +Y KLA  + TAV  LDNVID+N + + + +K     R
Sbjct: 648 CNLGSINLLSVVQPVDGDKWEINYAKLARIVDTAVHFLDNVIDVNLYPLPEIEKMTKRMR 707

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MG+   L  L IPY S EA+E+  + M+FI   A   S ELA++RGA+ +++ S
Sbjct: 708 KIGLGVMGWADMLFRLGIPYNSDEAIELGTKLMKFICDRARQQSAELAEQRGAFPAYEQS 767

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W                                   + K + +RN+    IAPT +I+ 
Sbjct: 768 IW-----------------------------------KDKGLKVRNATVTTIAPTGSISI 792

Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I GVS  I+P +   +V++ M       V+       KQR  +   ++  +  H GSI +
Sbjct: 793 IAGVSSGIEPLFAISFVRNVMDNTQLPEVHPIFEEVAKQRGFYSAELMRQIA-HQGSIQH 851

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892
           ++ IPDD+K++  TA +I P + +   +  Q++ D A S  + + +  + + +  +Y  A
Sbjct: 852 MDGIPDDVKRVFVTAHDISPEYHVRMQAAFQRYTDNAVSKTVNFPNSATQEDVRQVYILA 911

Query: 893 WLMGLKTTYYLRSRS 907
           + +G K     R  S
Sbjct: 912 YKLGCKGVTIYRDGS 926



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 139/295 (47%), Gaps = 38/295 (12%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFH 350
           +++L  RY      G+ IE P+  F RVA  +A  ++      +  K   EFY++++   
Sbjct: 8   IKVLEKRYLAKDEQGNIIETPEQMFRRVAHHVAQADSIYDPKVDVSKTEQEFYDIMTELE 67

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G    QLS+CF+  + D + GIF +++  A++ K  GG G  ++ +R  
Sbjct: 68  FLPNSPTLMNAGRPLGQLSACFVLPIEDSMEGIFDSVKNAALIHKSGGGTGFSFSRLRPK 127

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +K+  
Sbjct: 128 GATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFIQCKKDNS 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D      + N +  I + FM+ V ++  + L  P                          
Sbjct: 188 D----ITNFNISVGITEKFMEAVEKDEEYDLIDPHTG----------------------- 220

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               K+ R++ A  ++  ++ M +  G P I F D  N  +    +G + S+N C
Sbjct: 221 ----KITRRLRARQVFDLIVDMAWHNGEPGIVFLDRINKDNVVPALGEIESTNPC 271


>gi|254436965|ref|ZP_05050459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
 gi|198252411|gb|EDY76725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
          Length = 492

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 139/554 (25%), Positives = 234/554 (42%), Gaps = 97/554 (17%)

Query: 364 RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R+  LS+ F + T+PD + GI   L++ A+  +  GG+G D++ +R  G  +HG + ++ 
Sbjct: 8   RNVTLSNTFVMRTIPDSVDGIMDTLKDGALTMQMGGGVGFDFSTLRPSGTVVHGLDCRAA 67

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G +  + + + T   +  G  R GA+ A +   H D+E F+  +     DR R  + N +
Sbjct: 68  GPLAAMDIFDVTCKMIVSGMGR-GAMMATMRCDHPDIEAFIVAKS----DRSRLRNFNLS 122

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM  +  +  W L                               E  + R++ A
Sbjct: 123 VMVTDAFMAAIAADTTWDLV-----------------------------WEGAIMRRLRA 153

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++   +    P + F D  N  +P +++  + ++N C E  L         C L
Sbjct: 154 RDLWNAIMKQTYAAAEPGVLFIDKINAANPLRYLENIAATNSCAEQPL----PPNGTCPL 209

Query: 603 GSINLL----AHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            SINL     A F  + + D  +L   +R AVR+LDN +D++   +E  K+     R IG
Sbjct: 210 ASINLAQLVSAPFTPDARLDVVQLRQLVRVAVRMLDNSLDVSRFALEAQKQQAKDQRRIG 269

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--L 715
           +G+ G  +A+ +L   Y S +AV +    M+ I   A  AS  LA+ERG +  +     L
Sbjct: 270 IGVTGVANAIAMLGARYGSSKAVFLLGSWMQTIQNAAYGASALLAKERGVFPRYDADKHL 329

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+  +D                       +++  V+  G+RN     IAPT T +  
Sbjct: 330 TSRGIQALDP----------------------DVRTLVEQHGLRNGTLTTIAPTGTKSMF 367

Query: 776 CG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMI--SDLKYHDGSI 831
            G VS  I+P +   ++++      T  N    +E +    +W  A I   D    D  +
Sbjct: 368 AGNVSSGIEPMFSTSFLRT-----ITKPNGDKSSERVIDYAVWRFAQIFGPDAPLPDSFV 422

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIY 889
              +  PDD   + A A               Q+W+D   ++++N   D P     D IY
Sbjct: 423 TVADLSPDDHVAMQAAA---------------QEWVDSGISKTVNCPEDIPFDTFKD-IY 466

Query: 890 RQAWLMGLK--TTY 901
           R A+    K  TTY
Sbjct: 467 RAAYDADCKGCTTY 480


>gi|89901782|ref|YP_524253.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89346519|gb|ABD70722.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 589

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 214/485 (44%), Gaps = 65/485 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVP 377
           + RVA+ ++  E   +    E F  +LS + F+     L  +GT R   L +C  +  + 
Sbjct: 36  WARVALAVSGAEPHHQNDWRERFLAMLSDWRFLPGGRILAGAGTSRRVTLFNCLAMGPIE 95

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF AL+E     +  G +G D++ +R   A    +   + G + F+ V       
Sbjct: 96  DSVQGIFNALREAMQCLQAGGAIGIDFSTLRPALALAQSSGAVASGPVSFMNVWQAANAV 155

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +  G +R+ A+ A L   H D+E F+D + +TG           +  + D FM+ + ++ 
Sbjct: 156 LEAGNRRRSAMLATLRCDHPDIEAFIDAKLDTG----ALSHFKLSVLLNDEFMQALQEDG 211

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIK---VFRKISAVALWRKMLTML 553
            W L  P        L      +  E  ER  +D G  +   V R++ A ALW K+L   
Sbjct: 212 PWPLVFP--------LGEHPIPVGGEVCERVWSDGGPPQLCMVHRRVPARALWEKLLQAQ 263

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------CNLGSIN 606
             +G P + F D  N            ++NL  +  L  ++ +  V       CNLGSIN
Sbjct: 264 HASGEPGVLFIDRIN-----------RANNLWYDEHLTVANPDGGVPLPPWGACNLGSIN 312

Query: 607 LLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L + F    F      D   L +    A R LD+V DI+   ++  +KS    R IGLG+
Sbjct: 313 L-SRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQQKSALASRRIGLGV 371

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G    L +L + Y S  ++++  E M  I   A   SVELAQE+GA+ +     +    
Sbjct: 372 TGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELAQEKGAFPACDKLKYGASP 431

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVS 779
           F ++             ++R        L+  +   G+RNS+ +A+APT +I+ +   VS
Sbjct: 432 FVLE-------------LDRA-------LQDAIAQHGIRNSHLLAVAPTESISLLANNVS 471

Query: 780 QSIDP 784
             I+P
Sbjct: 472 NGIEP 476


>gi|257468300|ref|ZP_05632396.1| putative ribonucleotide-diphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062578|ref|ZP_07927063.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688254|gb|EFS25089.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 753

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 145/576 (25%), Positives = 258/576 (44%), Gaps = 79/576 (13%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
           E   ++++  F+ +   L N G     R    S+C++   P+D L  IF   ++ A    
Sbjct: 42  ELKEMIANKEFIFAGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYS 101

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           Y GG G D + +R  G+ ++ +   + G I F+++ N T   + Q G+R GA+   ++  
Sbjct: 102 YGGGCGVDISKLRPKGSEVNNSAKYTTGSISFMELYNLTTDIIGQKGRR-GALMISIDVN 160

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DV EF+ ++     D  +    N +  +   FMK V +   +                
Sbjct: 161 HPDVSEFISIK----SDLNKIQKANISVRVDANFMKAVVEGLQFV--------------- 201

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSP 572
            EF +         D GE+ + ++I A  L++++    ++   P + F D     N+ S 
Sbjct: 202 TEFLVE--------DTGEV-ISKEIDARKLFKELARQNWKFAEPGVLFWDRISKWNLLSE 252

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            +       +N C E  L +       C LGS+ L       +FD+D+LA+ ++ +V+ L
Sbjct: 253 DEEFEYA-GTNPCAEEPLPAGGS----CLLGSLILPTFVEGKEFDFDRLANAVQKSVKAL 307

Query: 633 DNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++V+D  +  H +E+ ++S    R IGLG++G    L  L + Y SPE++E  D   + I
Sbjct: 308 NDVLDEGLPLHPLEEQRESVRDWRQIGLGILGVGDLLIKLGMKYGSPESLEFCDNIAKVI 367

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +A+ AS  LA+E GAY  +K           D +     ++ E  +   S     E  
Sbjct: 368 IDNALKASALLAKESGAYPKYKA----------DKV-----LKSEFLLENASI----ETL 408

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + ++  G+RNS  + IAPT +I  +   S  I+P++   Y++   S             L
Sbjct: 409 QLIEEYGLRNSQLLTIAPTGSIGTMLETSTGIEPNFAFSYIRKTES-------------L 455

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D++ +  I   K +     N     DDL +   TA  ++P   I+     QK ID +
Sbjct: 456 HGEDVFYKVFIPIAKKY--MEENEIDDEDDLPEYFVTAQNLNPYDRIKMQGIWQKRIDAS 513

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            S  + L ++ S ++++ +Y +AW  GLK     R+
Sbjct: 514 ISSTINLVNKVSVEEVEKLYLEAWKNGLKGMTIYRA 549


>gi|163939260|ref|YP_001644144.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|229010749|ref|ZP_04167946.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132250|ref|ZP_04261106.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|163861457|gb|ABY42516.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228651188|gb|EEL07167.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750423|gb|EEM00252.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 462

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 226/492 (45%), Gaps = 71/492 (14%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHP 559
           +P  V   +  +  + +I  E Y+      ++K  +K   ISA  +  K+  +  E+G+P
Sbjct: 62  APYTVFKEYGKHLDDIDID-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYP 118

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINL 607
           ++ FK   N + P + +G V  SNLCTEI        +N    E  +     CNLGS+N+
Sbjct: 119 YLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNI 178

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    N +   + + + +     V D  I  N  T++KA    H+   +GLG M     L
Sbjct: 179 VNVMENKEIR-EAVHAGMEALTAVSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYL 234

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF----- 721
               I Y S EA E A      +++++I  S+E+A+E+G  +  F  S +  G +     
Sbjct: 235 AKNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYE 294

Query: 722 -----PI-DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                P+ + I  L E      ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +
Sbjct: 295 TTDYSPVTEKIQQLFE-----GIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYV 349

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P                     +V++++ R   +      + Y         
Sbjct: 350 QNATSSVMP---------------------IVSQIESRTYANATTYYPMPY--------- 379

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            +  D    + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A  
Sbjct: 380 -LSKDTFWYYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHK 438

Query: 895 MGLKTTYYLRSR 906
            GLK+ YY R+R
Sbjct: 439 KGLKSLYYTRTR 450


>gi|320332670|ref|YP_004169381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
 gi|319753959|gb|ADV65716.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
          Length = 976

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 151/587 (25%), Positives = 240/587 (40%), Gaps = 93/587 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428
           + TV DD+ GI  A ++ +  AK       D + +R  GA I G+ G S G + FL    
Sbjct: 213 ILTVQDDMGGIIDAARQVSETAKLGLEPRIDLSGMRPEGAPIKGSGGTSSGPVSFLVEIF 272

Query: 429 ----KVANDTA-----------------VAVNQGGKRKGAVCAYLETWHIDVEEFL---D 464
               + AN  A                   V QGG R+GA  A +   H DV +FL   D
Sbjct: 273 DNFLEWANRGAETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHADVLDFLTAKD 332

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--LHDLYGKEFEIAY 522
           L +   +    T   N +  + + F   +  N  W + + D      L    GK      
Sbjct: 333 LDREASEGDIST--FNISILVDEAFWATLQANGLWAIPAQDVPGKYYLEPQKGKFSGSFP 390

Query: 523 ENYERQAD--RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
           E  ER  D  RG      KI A  LWR++    + TG P + F D  N  S  +++G   
Sbjct: 391 ELPERAEDGARGVPTYGGKIPAAWLWREIAQHAWSTGEPGLIFVDRINEYSALKNLGERY 450

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + S+N C EI L         C+LG+INL A+   + FDY    + +RT VR LD+V+D
Sbjct: 451 QIKSTNPCGEIPLTVGEP----CDLGAINLAAYVKGSDFDYAAFRADVRTTVRFLDDVLD 506

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  ++++ + R +GLG+MG   AL  + + Y +        E M  +   AI+ 
Sbjct: 507 VNVFALEDNREASQSLRRLGLGVMGLADALIKMGLRYDNEAGRTAIFEIMSALREEAIAE 566

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  L  ERG Y  +                                    E   ++    
Sbjct: 567 SERLGAERGVYRVYT-----------------------------------ENADKIPHAP 591

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK------ 811
            RN   + +APT T + + GVS  I+P +     +   S    +++   V  L+      
Sbjct: 592 RRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLETYPPAA 651

Query: 812 QRDL---WDEAMISD-LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             D+   WD   +++ +  + GS+  +  IPD L+++   A +I P+  +      Q+  
Sbjct: 652 NMDVDGKWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDIKPLDHVRMQGAVQRAF 711

Query: 868 D----QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
           D     A SL+  ++ P+   +  +   Y +A+  G K     R  S
Sbjct: 712 DAEGYAANSLSKTINLPNDATVQDVQDAYTEAYRTGCKGITVYRDGS 758


>gi|294506192|ref|YP_003570250.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
 gi|294342520|emb|CBH23298.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
          Length = 908

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 137/549 (24%), Positives = 230/549 (41%), Gaps = 78/549 (14%)

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           ND  +E + + E  G    Y        G+   +P  ++ R A  +A  E + +     F
Sbjct: 58  NDDIFETEISEEVYGQNYQY--------GTDDRVPDTWY-RNARAMAQVEDDTDMWTQRF 108

Query: 343 YNLLSS-------FHFMCSTPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQE 389
           Y LLS        F F        N+GT      L +CF++       D +  I   L  
Sbjct: 109 YQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTR 168

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK------ 443
            A +    GG G     +R  GA I G    + G +  L V N  A  +  G        
Sbjct: 169 QAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRD 228

Query: 444 ------RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                 RKGA    +  WH D+ EF++ ++  G    R H  N +  I D FM+ V  + 
Sbjct: 229 DVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG----RLHKFNMSVLITDEFMEAVKNDD 284

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS--------AVALWRKM 549
            W L  PD   +  + Y + ++   + Y+ +   G +K +   +        A  +W ++
Sbjct: 285 TWALRFPD-YENEKEFYKQHWDGNLKAYQEKG--GTVKTWTDPATGEPAVYEAREIWNRI 341

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-- 607
           +   +    P + F D  N  +   +   ++++N C E  L        VC LG++N+  
Sbjct: 342 MDSTYNRNEPGVIFVDTINKENNLAYTEHINATNPCGEQVLPVG----GVCLLGNLNVTQ 397

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           L      + +YD +   +  AVR LDNV D++   +E+ +++    R IGLG  G  SAL
Sbjct: 398 LVDREAGEINYDLVDDLVPLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSAL 457

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            ++   Y S E   +  E  E ++  A  AS  LA+E+GA+  F                
Sbjct: 458 MMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEKGAFPLFD--------------- 502

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
                +DE L+     RL  D+ K+ +  +G+RNS+ ++I PT   + +    S  I+P 
Sbjct: 503 -----KDEYLSSPFVQRLS-DKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPV 556

Query: 786 YQNLYVKSN 794
           + + Y++++
Sbjct: 557 FMHSYIRTS 565


>gi|226331037|ref|ZP_03806555.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
 gi|225201832|gb|EEG84186.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
          Length = 326

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 22/305 (7%)

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL
Sbjct: 14  LSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYL 73

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ 
Sbjct: 74  HAHHPDIYHFLDTKRENADEKVRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERVYG 133

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +   E  I+ E Y    +  +I+  +KI A   ++ +  + FE+G+P+I F+D  N  +P
Sbjct: 134 VPMSEISIS-EKYSEMVNNAQIRK-KKIKAREFFQTLAEIQFESGYPYIMFEDAVNRANP 191

Query: 573 QQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI  +NS+SE               CNLGS+N+         D   
Sbjct: 192 I--AGRINMSNLCSEILQVNSASEYHPDLSYRHIGHDISCNLGSMNIAM-----AMDSPN 244

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TA+R L NV ++    ++   +K N    AIGLG M     L    I Y S EA
Sbjct: 245 FAHTVSTAIRALSNVSEMTKIESVPSIEKGNLASHAIGLGQMNLHGYLARERIYYGSEEA 304

Query: 680 VEIAD 684
           ++  +
Sbjct: 305 LDFTN 309


>gi|288929559|ref|ZP_06423403.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329064|gb|EFC67651.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 854

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 165/683 (24%), Positives = 289/683 (42%), Gaps = 111/683 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           FA + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      A E Y LL
Sbjct: 20  FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYPNPLSAQEVYELL 79

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    S  T   +G +   LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFRYIVPAGSPMTGIGNGYQVASLSNCFVVGLEGDADSYGAILRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +                 Y ++F I
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDSFMQAAVDDKP---------------YVQQFPI 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                  + D  E+K  ++ISA  LW K++   +++  P + F D     S P  +  + 
Sbjct: 240 -------EGDNPEVK--KEISAKTLWEKIVHNAWQSAEPGVLFWDTILRESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L  +NL ++  N       FD+DK A  +  A R+
Sbjct: 291 FRTVSTNPCGEIPLCPYDS----CRLLCVNLFSYVVNPFTKEAYFDFDKFAKHVAVAQRI 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK K+ +   R  G+G+      +
Sbjct: 347 MDDIVDLELEKIDLIMEKIKDDPQNDEVKGAEYHLWEKIKRKSSMGRRTGVGITAEGDMI 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA +++    + ++  A  +SV +A+ERGA+  F         F    I 
Sbjct: 407 AALGLRYGTQEATDVSVSVHKRLALAAYRSSVVMAKERGAFEIFDAKREAANPF----IL 462

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E    L         +D++       G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 463 RLKEADQSL---------YDDM----VAYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++ + T V+   V+E+   D ++E ++   K+ D    N            I
Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTDKRYTQEEI 567

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           + I +      ATA ++D +  +      QKW+D + S+ + L     + L + +Y +AW
Sbjct: 568 DAIVEQSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNLPNDVDEALVNRLYVEAW 627

Query: 894 LMGLK--TTYYLRSRSATSVEKS 914
             G K  T Y   SRS   +  S
Sbjct: 628 RSGCKGCTIYRDGSRSGVMISVS 650


>gi|257076070|ref|ZP_05570431.1| ribonucleoside reductase class II [Ferroplasma acidarmanus fer1]
          Length = 1136

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 158/313 (50%), Gaps = 41/313 (13%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            CNLGSINL     + +F+Y++   TI  A R L+NV+D N   +E  K      R IGLG
Sbjct: 815  CNLGSINLAKFVEDGKFNYERYRETIDVATRFLENVVDANKFPVESIKNMTRKTRKIGLG 874

Query: 660  LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            +MGF  AL +L IPY S EA+E A+  M+ ++  +   S +LA ERG +  + GS +++ 
Sbjct: 875  IMGFADALIMLGIPYNSNEALEFAENVMKTLNDESHMESQKLAAERGVFPGWYGSEYEE- 933

Query: 720  VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                              K I MRNS    IAPT TI+ I G S
Sbjct: 934  ----------------------------------KGIKMRNSTTTTIAPTGTISIIAGCS 959

Query: 780  QSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             SI+P +   +V+  ++G +   VN  L N LK R+LW + ++  +    G +GN++ +P
Sbjct: 960  SSIEPLFALAFVRHVLNGQELLEVNPLLENALKSRNLWTQELMEKIA-ETGKLGNLD-LP 1017

Query: 839  DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
            +D+K +  TA EIDP W +   +  QK+ D   ++++NL  D  + + +   YR A  + 
Sbjct: 1018 EDVKNLFITAQEIDPDWHVLMQATFQKYCDSGVSKTINLPFD-ATREDIAKSYRLAKELH 1076

Query: 897  LKTTYYLRSRSAT 909
             K     R RS +
Sbjct: 1077 CKGITVYRDRSKS 1089



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 113/247 (45%), Gaps = 32/247 (12%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +F N++    ++ ++PTL N+G    QLS+CF+  V D +  IF  L+  A + K  GG 
Sbjct: 224 KFENMMIKLEYVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFDTLKATAEIHKSGGGT 283

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T G + G + F+++ + T   + QGGKR+GA    L   H ++ 
Sbjct: 284 GFSFSRLRASDDIVASTKGVASGPVSFMRIFDVTTDVIKQGGKRRGANMGILNYNHPNIM 343

Query: 461 EFLDLRKNTGDDRRRT-HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +F+    N+ D   +   + N +  + D F +++  +    L +P +             
Sbjct: 344 DFI----NSKDAENKILSNFNISVGVNDEFFEKLDNDENVDLINPRDG------------ 387

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                          KV  ++ A  LW  ++   + T  P + F D  N ++P +++G +
Sbjct: 388 ---------------KVTGRVKATTLWNSIIDHAWLTADPGMIFLDEINKKNPVKNIGYI 432

Query: 580 HSSNLCT 586
            S+N C 
Sbjct: 433 ESTNPCV 439



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 33/165 (20%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+      + ++ D +    E           S+
Sbjct: 8   VIKRDGSSVPFDKKKIAMAIFKAMLSVKIGSMEEANKLADYVAQELET----------SS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKIT-----REYVLYREERSDVRAAQSHSKSDAPIAPKL 145
            +  +E IQD VE  LM    + ++     + Y+LYRE+R+ +R  +             
Sbjct: 58  EVPTVELIQDTVEKVLMTRRINDVSYIAAAKAYILYREKRNTIRQEKEF----------- 106

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            I + D   +S N+ +    V EA    +D   KI+  ET K M+
Sbjct: 107 -IGVKDDLKLSLNAVK----VLEARYLFKDSEGKII--ETPKQMF 144


>gi|153820327|ref|ZP_01972994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
 gi|126509128|gb|EAZ71722.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
          Length = 408

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 170/394 (43%), Gaps = 25/394 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTT 375
           ++ VA  L  K   KE R      FY+  S+F     TP +  SG R P  Q SSC L  
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM--SGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYE 526
               TLFSP +V  L+D + +   EFE  Y  YE
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYE 383


>gi|78044854|ref|YP_359531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996969|gb|ABB15868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 1101

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 44/313 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL     + + D++ L  T++ AVR LDNVID+N + + + +K     R IGLG
Sbjct: 627 CNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGLG 686

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L+IPY S EA+ +AD+ MEFI+  +  AS ELA+ RG + ++K S+W + 
Sbjct: 687 VMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVWAK- 745

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                             K + +RN+    IAPT +I+ I GVS
Sbjct: 746 ----------------------------------KGLKLRNATTTTIAPTGSISIIAGVS 771

Query: 780 QSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             I+P +   + +  +   D   V+       ++   + E +++++    G I  I  +P
Sbjct: 772 SGIEPVFALAFKRHILDRKDIVEVHRLFEQHARENGYYSEKLMNEVA-KTGRITGIAGVP 830

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLM 895
           ++ K++  TA +I P W ++  +  QK  D A S  + +  P+   ++ +   Y  A+ +
Sbjct: 831 EEAKRLFVTALDIAPEWHVKMQAVFQKHTDNAVSKTINM--PNSATVEDVKESYLLAYKL 888

Query: 896 GLK--TTYYLRSR 906
           G K  T Y   SR
Sbjct: 889 GCKGLTVYRDGSR 901



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 141/295 (47%), Gaps = 37/295 (12%)

Query: 298 LQILYDRYFL-HINGSRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYNLLSSFHF 351
           L++L  RY   +  G  IE P+  F RVA  +A       E ++E+ A EFYN +++  F
Sbjct: 9   LKVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +TPTL N+G    QLS+CF+  V D +  IF A++ +A++ K  GG G  ++ +R  G
Sbjct: 69  LPNTPTLVNAGRPLGQLSACFVLPVGDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +    +
Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGGVRRGANMGVLRCDHPDILEFITAK----E 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D R   + N +  + D FMK + ++  + L  P     +  L  +E              
Sbjct: 185 DNRDITNFNISVALTDKFMKALEEDGEYELIEPSTGEVVGRLRARE-------------- 230

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               VF +I+  A W+         G P + F D  N  +    +G + S+N C 
Sbjct: 231 ----VFERIARNA-WK--------NGEPGVIFIDRINAANVVPELGEIESTNPCV 272


>gi|39938540|ref|NP_950306.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
 gi|39721649|dbj|BAD04139.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
          Length = 769

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 252/576 (43%), Gaps = 57/576 (9%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T +R 
Sbjct: 219 FTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRA 278

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  I G  G  +GV+   K+ + +    +Q G R GA   YL  +H D+ +FL  +K +
Sbjct: 279 KGESIKGIKGVCKGVVGVCKLLDHSFRYADQIGLRTGAGAVYLNVFHSDIIDFLSTKKLS 338

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYE-NYER 527
            D+  R   ++    +P+  ++    N     F P  V      YGK F +IA + +Y  
Sbjct: 339 ADEDVRVKTLSLGVVVPNKMIELARNNEVMYTFFPHTV---FLEYGKNFADIAVDMDYWY 395

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  KV +K I+   L   +  M  E+G+P++ F D  N          V  SNLCT
Sbjct: 396 DILVANPKVQKKAINPRQLLELIAHMQGESGYPYLMFCD--NTNQANTSDLKVKFSNLCT 453

Query: 587 EI---TLNSSSE---ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           EI   T+ S  +   +T    +G   S NL +    N    + +  T+  A+ V++ V +
Sbjct: 454 EILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMNCVSE 513

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     ++F+++ 
Sbjct: 514 NTNISYVPAVAKANFINRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAVNFYSLL 573

Query: 697 ASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDELKK 751
            S   A+  G  +  F+ S +  G +  +   +L +      M +   LP    W +LK+
Sbjct: 574 HSCNKAKTTGKKFYRFEQSKYADGSYFDNRGEILPKTAKIKKMFQNITLPTQKDWHQLKQ 633

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V   G+ NS+ +A+AP  +I  I G + S+ P  Q   V+    G+        +  LK
Sbjct: 634 DVMQFGLYNSHRLAVAPNGSIGYIMGATPSLTPVKQ--LVEERTYGNSKTYCP--MPALK 689

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           Q                               ++ TA++++   LI+  +  QK +DQ  
Sbjct: 690 QTSF----------------------------MYTTAYKMNKYDLIDVIAIAQKHVDQGI 721

Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           S  L +  + + ++L   Y  A    +KT YY R++
Sbjct: 722 SFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 757


>gi|254243048|ref|ZP_04936370.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
 gi|126196426|gb|EAZ60489.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
          Length = 734

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 150/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   L  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNALVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++ N
Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 642

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671


>gi|329957666|ref|ZP_08298141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
 gi|328522543|gb|EGF49652.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
          Length = 845

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 170/693 (24%), Positives = 292/693 (42%), Gaps = 121/693 (17%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL+ F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + ++         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGTPFVQQYPIDATE--------- 242

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576
                            VF+K ISA  LW+K++   +++  P + F D     S P  + 
Sbjct: 243 ----------------PVFKKEISAADLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286

Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
            + +   S+N C EI L         C L +INL ++  N       FD+D     +  A
Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342

Query: 629 VRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGF 663
            R++D++ID+    IE+                          KKS    R  G+G+   
Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRT-GVGITAE 401

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L  L + Y + EA E A++  + ++  A  +SVE+A+ERGA+  +         F  
Sbjct: 402 GDMLAALGLRYGTEEATEFAEKVHKTVALSAYRSSVEMAKERGAFEVYDSEREKNNPF-- 459

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+
Sbjct: 460 --INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIE 504

Query: 784 PSYQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISD--LKYHD 828
           P +  +Y +        +N+  DF          ++V   K    W EA   D   +Y  
Sbjct: 505 PVFLPVYKRRRKVNPNDANVHIDFVDETGDAFEEYIVFHPKFV-TWMEAEGYDPAKRYTQ 563

Query: 829 GSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-D 886
             I   +E+ P       AT+ ++D +  ++   R QKW+D + S+ + L     ++L +
Sbjct: 564 DEIDALVEKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVN 619

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917
            +Y +AW  G K  T Y   SRS   +   + K
Sbjct: 620 RLYIEAWKSGCKGCTVYRDGSRSGVLISAKSEK 652


>gi|52550429|gb|AAU84278.1| ribonucleotide reductase large subunit [uncultured archaeon
           GZfos9C4]
          Length = 914

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 39/280 (13%)

Query: 600 CNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           CNLGSIN+       + + D+++L   I  +V+ LD+VID+N + + + +K    +R IG
Sbjct: 608 CNLGSINVSKFVKSGDGEIDWERLREVICISVKFLDDVIDVNRYPLPEIEKMTKANRKIG 667

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MGF   L  L I Y S +A+   ++ M+FI+  A   S EL  ERG++S+F+ S+W+
Sbjct: 668 LGIMGFAELLIKLGIAYDSKDALSTGEKLMQFITNEARRCSTELGLERGSFSNFELSVWN 727

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                               K   MRN+    IAPT TI+ I G
Sbjct: 728 S-----------------------------------KYEAMRNATVTTIAPTGTISIIAG 752

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  I+P +   +V+ N+ G    +N       K+R  + + +I+++    GS+ +I+ +
Sbjct: 753 CSSGIEPIFAVAFVR-NVMGGMLEINKLFEEIAKERGFYSKELITEIA-KCGSVQDIDGV 810

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           P D+K++  TA +I P W +   +  QK+ D A S  + L
Sbjct: 811 PGDIKRVFVTALDISPEWHVRMQAAFQKYTDNATSKTVNL 850



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 40/305 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE-- 341
           D       +++L  RY L    G  IE P   F RVA  +A  E     +++E + +E  
Sbjct: 19  DLKLSLNAVEVLKRRYLLKNELGGVIETPSQMFKRVAKAIARAELNYGKSKEEVKEIERR 78

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY L+ +  F+ ++PTL N+GT   QL++CF+  V D + GIFGA+++ A + +  GG G
Sbjct: 79  FYLLMRNLEFLPNSPTLMNAGTELGQLAACFVLPVEDSIGGIFGAVKKMAKIHQSGGGTG 138

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  T G + G + F++V +     + QGGKR+GA    L   H D+ E
Sbjct: 139 FSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMGILNAEHPDILE 198

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +     +R    + NT+  + D FM+ V +N  + L +P                 
Sbjct: 199 FIRAK-----ERGEFANFNTSVAVTDEFMRAVERNDEYGLVNP----------------- 236

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    +GE+K   +I A  ++ +++T  ++TG P I F D  N R+    VG + +
Sbjct: 237 -------RTKGEVK---RIKAREVFNEIVTYAWKTGDPGIVFMDEINRRNTIPAVGKIEA 286

Query: 582 SNLCT 586
           +N C 
Sbjct: 287 TNPCV 291


>gi|255691403|ref|ZP_05415078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
 gi|260623049|gb|EEX45920.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
          Length = 847

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 169/701 (24%), Positives = 293/701 (41%), Gaps = 111/701 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIESKYPNALTAKELYD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + SD    + KE 
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDGKPYLQQYPIDSSD--PTFTKE- 248

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                                I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 249 ---------------------IDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD+D     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPNAYFDFDLFKKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQ 664
           R++D++ID+    IE+                          KKS    R  G+G+    
Sbjct: 344 RIMDDIIDLELEKIERIMHKIDEDPENDEVKRAERVLWEKIYKKSGQGRRT-GVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYDNKREQNNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  LAE   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -IQRLAEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN---------- 833
            +  +Y  +  ++ + T V+   V+E    D ++E ++   K+      N          
Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPSKRYSQ 563

Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890
             I+++        AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y 
Sbjct: 564 EEIDKLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYV 623

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +AW  G K     R  S + V  ST    + K    P   P
Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLISTKSDKNKKEELPPCKPP 664


>gi|88705203|ref|ZP_01102914.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
 gi|88700293|gb|EAQ97401.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
          Length = 715

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 156/625 (24%), Positives = 261/625 (41%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTT--- 375
           F RVA  LA  ET   +   E +          +   + N+G     P  S+   T    
Sbjct: 49  FKRVAAALAKVETSDHEDWKEKFEWALRNGATPAGRIMSNAGAEKYKPSTSTINCTVSGP 108

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D + GI  A  E  +  K   G+G +++ +R  GA++ G   ++ G + F+++ + T 
Sbjct: 109 ISDSMEGILQANLEAGLTLKAGCGIGYEFSTLRPSGANVAGAGAETSGPLSFMEIFDATC 168

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+  G R+GA     +  H DV EF+  ++  G  R+     N +  I D FM+ V  
Sbjct: 169 KTVSSAGGRRGAQMGTFDVSHPDVFEFIRAKRTDGMLRQ----FNLSLLITDEFMEAVKA 224

Query: 496 NAGWTLFSPDEVSDLHD---------LYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
              W L  P +  +L D         +  K F I       +      K++  + A  LW
Sbjct: 225 EGDWPLVFPIKADNLEDAEKKAGSRGILWKYFPITDGYLSNEVGEVACKIYNVVKARELW 284

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +++++ ++   P     D  N+ +       + S+N C E  L         C LGS+N
Sbjct: 285 DEVMSLTYDYAEPGFILIDKYNVMNNNWFCENIRSTNPCGEQGLPYYGS----CLLGSVN 340

Query: 607 L----LAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L    ++ F +   FD+DK         R++DNV++IN   + +  +   T R  G+G +
Sbjct: 341 LTRFIVSPFTDRAAFDWDKFREVTAIFTRMMDNVVEINGLPLPEQVEEITTKRRHGIGYL 400

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGS 714
           G  SA+ L+ + Y S EAV   D     ++       +ELA+E+GA       Y      
Sbjct: 401 GLGSAVTLMGMRYGSEEAVAFTDRVSRELAVVGWKVGLELAKEKGAAPILDKNYDVTGEM 460

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAP 768
           L  +     D   L  +V   + M R SR          +L   ++  G R ++  +IAP
Sbjct: 461 LNARPEMIADGFKLGDKVSGRVLMARYSRYMQTIAEVEPQLVAEIEQHGARFTHHSSIAP 520

Query: 769 TATIA--NICGVSQSIDPSYQNLYVKS-----NMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           T TIA       S  I+PS+ + Y+++       +   T V SF +  L  R L +    
Sbjct: 521 TGTIAFSFANNSSNGIEPSFAHSYMRNIIKAGKKTKQQTEVQSFEL--LAYRHLINPE-- 576

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDE 879
           +D    +G        P+ L     T  +I P   ++  +  QKWID   ++++N+  + 
Sbjct: 577 ADPYATEG--------PNKLPDYFITTNDISPKEHVDMQAASQKWIDSSISKTVNVPTEI 628

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
           P     D +Y  A+  GLK     R
Sbjct: 629 PYDSFKD-VYMYAYERGLKGCTTFR 652


>gi|238801852|ref|YP_002922902.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
 gi|216263065|gb|ACJ71933.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
          Length = 723

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 177/790 (22%), Positives = 318/790 (40%), Gaps = 106/790 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMI--- 59

Query: 207 RTLIEKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              ++K+   Y+ +  R LL  + +E      K P   T           F + +E   +
Sbjct: 60  DVCVDKQTQEYSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNME---R 105

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           A L  +  MD+   +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  
Sbjct: 106 AGLWEK--MDYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFM 163

Query: 321 FMRVAMGLALKETEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           FM    G+A+K  EK+ +       ++ Y  LS       TP L          +SC L 
Sbjct: 164 FM----GMAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLI 219

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D    +  A +    +     G+G      R +G  I     +  G +P+ K+   +
Sbjct: 220 KANDTAESLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVR-S 277

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           +V  N+   R G+   +       +E+ L L+  T    +R ++M+ +    D F + V 
Sbjct: 278 SVEANKQKSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQ 337

Query: 495 QNAGWTLFSPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +  W LFS  +   L+D++      EF +A  +    A    +K  R++ A  + +  +
Sbjct: 338 YDTDWLLFSYKDAPKLYDMFYTASADEFAMAVGH----AVHSGVK-HRRVKAREIAKLFI 392

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------AVCNL 602
              + TG  +  F +  N  +P +    +  SNLC EI L     E         AV   
Sbjct: 393 QQRYATGRVYPFFTNNANTHTPFKEP--LKMSNLCMEIVLPVYGFEKETDLYRDDAVKED 450

Query: 603 GSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           G + L  LA     +   D+ A     A+ ++D+VID+  +     +      R++G+GL
Sbjct: 451 GEVALCFLASLVAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGL 510

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L   ++ Y+S        E  E  S++   AS+ LA+ERG     K + + +G 
Sbjct: 511 TNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGW 570

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVS 779
            P  +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +
Sbjct: 571 VPPKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTT 626

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             + P    +  K + +G+   +                                  +PD
Sbjct: 627 NGLYPIRDFILTKKSATGNVLFI----------------------------------VPD 652

Query: 840 --DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM-- 895
             +LK ++  A++ID   +I+  +  QK+  QA S + Y+D    KK+       +++  
Sbjct: 653 YEELKYVYEIAWDIDTFDMIDCYAIAQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYA 712

Query: 896 ---GLKTTYY 902
              G+KT YY
Sbjct: 713 NSVGMKTMYY 722


>gi|260909524|ref|ZP_05916227.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636372|gb|EEX54359.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 854

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 165/683 (24%), Positives = 287/683 (42%), Gaps = 111/683 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           FA + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      A E Y LL
Sbjct: 20  FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYPNPLSAKEVYELL 79

Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    + +   G  H    LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFRYIVPAGSPMTGIGNSHQVASLSNCFVVGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +                 Y ++F I
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDNFMQAAVDDKP---------------YVQQFPI 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC---NIRSPQQHVG 577
             +N E         V ++ISA ALW K++   +++  P + F D     +I      +G
Sbjct: 240 NSDNPE---------VEKEISAKALWDKIVHNAWQSAEPGVLFWDTILRESIPDCYADLG 290

Query: 578 VVH-SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L  +NL ++  N       FD+DK A  +  A RV
Sbjct: 291 FTTVSTNPCGEIPLCPYDS----CRLLCVNLFSYVVNPFTKEAYFDFDKFAKHVAIAQRV 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK K+ +   R  G+G+      +
Sbjct: 347 MDDIVDLELEKIDLIMEKIKDDPQSSEVKGAEYHLWEKIKRKSSMGRRTGVGITAEGDMI 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA +++    + ++  A  +SV +A+ERGA+  F         F    I 
Sbjct: 407 AALGLRYGTQEATDLSVSVHKCLAIAAYRSSVVMAKERGAFEVFDAKREAANPF----IL 462

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E    L  +  +              G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 463 RLKEADPSLYNDMVA-------------YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++ + T V+   V+E+   D ++E ++   K+ D    N            I
Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTEKRYTQEEI 567

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           + I +      ATA ++D +  ++     QKW+D + S+ + L     + L + +Y +AW
Sbjct: 568 DAIVEQSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAW 627

Query: 894 LMGLK--TTYYLRSRSATSVEKS 914
             G K  T Y   SRS   +  S
Sbjct: 628 RSGCKGCTIYRDGSRSGVMISVS 650


>gi|107104599|ref|ZP_01368517.1| hypothetical protein PaerPA_01005678 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 108 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 338

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 516

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 572

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++ N
Sbjct: 573 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 622

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 623 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651


>gi|149183744|ref|ZP_01862151.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148848544|gb|EDL62787.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 854

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 196/436 (44%), Gaps = 56/436 (12%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V  +A + L  PD    +     +E +   EN+    D  E       ++ +RK+ 
Sbjct: 379 FMEAVENDAEYELRFPD----VEKYDEEEMKFYNENWHEVGDVREWEQMGYKVRTYRKMR 434

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW  +      +  P I F D  N ++  +  G  V ++N C E  L   S    VC
Sbjct: 435 AKELWNLINVCATYSAEPGIFFIDNANDKTNAKAYGQKVVATNPCGEQPLAPFS----VC 490

Query: 601 NLGSINLLAHFA---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL ++NL A FA   N   D+DKL  T+   VR+ DNVID   + +E+ KK     R +G
Sbjct: 491 NLAAVNL-AEFADKENKTVDFDKLKKTVEVGVRMQDNVIDATPYFLEQNKKQALGERRVG 549

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE  E I+  A  ASVEL++E+G++   +G   +
Sbjct: 550 LGVMGLADLLIYCEKEYGSEEGNKLVDEVFETIAVTAYRASVELSKEKGSFPFLQGETEE 609

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +          L E    +     S +P D +++ +   G+RNS+ + +APT +   + G
Sbjct: 610 E-------TNRLREAF--INTGYMSEMPED-VRQSILDNGIRNSHLLTVAPTGSTGTMVG 659

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           V+  ++P +   Y +S   G F  V + +V E  +R                   N E  
Sbjct: 660 VATGLEPYFSFTYYRSGRLGKFIEVKAEIVQEYLER-------------------NPEVN 700

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWL 894
           PD L +   ++ E+ P    +     Q+WID   S++  ++ P G  +D    +Y + + 
Sbjct: 701 PDSLPEWFVSSMELAPEAHADVQCVIQRWID--SSISKTVNAPRGYTVDQVQGVYERLYK 758

Query: 895 MGLK--TTYYLRSRSA 908
            G K  T Y   SR +
Sbjct: 759 GGAKGGTVYVDGSRDS 774



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377
           R A GLA  ET +EKR     +FY+ L + +F+ +   L+ +G  T     +   +  V 
Sbjct: 137 RNATGLASVETTEEKRQEWFEKFYHELVNMNFVPAGRVLYGAGADTDVTYFNCYVMPFVK 196

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 197 DSRDGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 256

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 257 VEQGGSRRGAQMIMLADWHPDIIEFI 282


>gi|116053647|ref|YP_793974.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894600|ref|YP_002443470.1| NrdJa [Pseudomonas aeruginosa LESB58]
 gi|254237823|ref|ZP_04931146.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|115588868|gb|ABJ14883.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169754|gb|EAZ55265.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|218774829|emb|CAW30647.1| NrdJa [Pseudomonas aeruginosa LESB58]
          Length = 734

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++ N
Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 642

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671


>gi|304314793|ref|YP_003849940.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588252|gb|ADL58627.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 573

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 44/309 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    + +  ++++L  T+ TAV  LDNVID+N + + + ++     R IGLG
Sbjct: 280 CNLGSINLSLMVSASGVNWERLRRTVHTAVHFLDNVIDVNSYPLPEVREMTLKTRKIGLG 339

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L +PY S EA+ +A+  M FI   A  AS +LA ERG++  F GS+WD+ 
Sbjct: 340 VMGFADMLIKLGVPYNSGEALGVAERVMSFIEGEARRASSDLAAERGSFPEFSGSMWDKM 399

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F                                   GMRN+    IAPT +++ I G S
Sbjct: 400 GFE----------------------------------GMRNATLTTIAPTGSLSIIAGTS 425

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD--EAMISDLKYHDGSIGNIERI 837
             I+P +   + ++ +   FT  N       + R   D  E +IS      G++  +  +
Sbjct: 426 SGIEPLFAVSFTRNILGRKFTENNPLFERIARGRLKRDTFEMIIS-----KGTLHGVSGV 480

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLM 895
           P  ++++  TA EIDP++ ++  +  Q+ +D A  +++NL  D  S    + ++  A+ +
Sbjct: 481 PGKIRRLFVTAHEIDPVFHVKMQAAFQRHVDNAVSKTVNLPPDA-SINDAERVFGAAYEL 539

Query: 896 GLKTTYYLR 904
           G K     R
Sbjct: 540 GCKGITIYR 548



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 35/167 (20%)

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G + G + F++V +     + QGG+R+GA    L   H D+  F++ + + G  R    +
Sbjct: 2   GVASGPVSFMRVFDVAVEVIKQGGRRRGANMGVLHVSHPDIFGFIEAKTSEGPLR----N 57

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  +PD FM    ++    L +P     +  +  +E                  +F+
Sbjct: 58  FNLSVSVPDRFM----EDRKIDLINPRTGETVDSVPSRE------------------IFK 95

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +I   A WR        +G P + F+D  N R+P   +G + ++N C
Sbjct: 96  RIVKAA-WR--------SGDPGMIFEDRINRRNPTPSLGRIEATNPC 133


>gi|296392362|ref|ZP_06881837.1| NrdJa [Pseudomonas aeruginosa PAb1]
          Length = 714

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 108 TIQDSMDHILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 338

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 516

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 572

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++ N
Sbjct: 573 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKTAN 622

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 623 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651


>gi|15600690|ref|NP_254184.1| NrdJa [Pseudomonas aeruginosa PAO1]
 gi|9951832|gb|AAG08882.1|AE004962_6 NrdJa [Pseudomonas aeruginosa PAO1]
          Length = 734

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 243/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRTLV 592

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++ N
Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHMDIQAAAQKWVDSSISKTAN 642

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671


>gi|298372704|ref|ZP_06982694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275608|gb|EFI17159.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 881

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 156/680 (22%), Positives = 287/680 (42%), Gaps = 113/680 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
           F+ + L  Q+  ++Y L  +   +  + P+    R+A  +A  E +        E + L 
Sbjct: 46  FSGDELATQVWINKYALKDSAGNLYEKSPEDMHRRMAREIARIEAKYPNPMSEDELFELF 105

Query: 347 SSFHFMCSTP---TLFNSGTRHPQLSSCFLTTV--PDDLYG-IFGALQENAMLAKYSGGL 400
             F ++       T   +  +   LS+CF+  V    D YG I    +E   L K  GG+
Sbjct: 106 DKFKYIVPQGGPMTGIGNSFQVSSLSNCFVVGVDGSSDSYGAIIKIDEEQVQLMKRRGGV 165

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V QGG+R GA+   +   H D E
Sbjct: 166 GHDLSAIRPEGSPVNNSALTSTGIVPFMERYSNSTREVAQGGRR-GALMLSISIKHPDSE 224

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FM+ V     +T   P       D     F +
Sbjct: 225 KFIDAKL----EQNKITAANISVKIDDEFMRCVESGKQYTQQYP------IDSPNPTFSV 274

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVV 579
                             KI A  LW K++   + +  P + F D     S P  +  + 
Sbjct: 275 ------------------KIDAKKLWNKIIHNAWASAEPGVLFWDTIIRESVPDCYADLG 316

Query: 580 H---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
           +   S+N C EI L         C L ++NL ++  N       F+++     +R A R+
Sbjct: 317 YKTVSTNPCGEIPLCPYDS----CRLLAVNLYSYVENPFTAMANFNFELFRKHVRYAQRI 372

Query: 632 LDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+    I                        +K K      R  G+G+      +
Sbjct: 373 MDDIIDLEIEKIDRILEKISSDPESEVVKRTEYELWQKIKDKCINGRRTGVGITAEGDMV 432

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + YAS EA++ A+   + ++  A  +SV +A+ERGA++ F                
Sbjct: 433 AAMGLRYASDEAIDFAENVQKVLAVEAYRSSVIMAKERGAFAVFDAK------------- 479

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              E ++   M      P  ++ + +K  G RN  C+ +APT T + +   +  I+P + 
Sbjct: 480 --REEKNPFVMRLREADP--QMYEDMKKYGRRNIACLTVAPTGTTSIMTQTTSGIEPVFL 535

Query: 788 NLYVKSNM--SGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSI---------GNIE 835
            +Y +       D  V     ++E+  Q D W++  +   K+ D  +          N +
Sbjct: 536 CVYTRKRKVNPNDKNVT----IDEVDAQGDSWEKFTVFHHKFVDWMVVNGYDVTKRYNEK 591

Query: 836 RIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
            + + +KK     AT+ ++D +  +    R QKW+D + S+ + L E + ++L D +YR+
Sbjct: 592 ELAELIKKSPYYGATSNDVDWLNKVRLQGRIQKWVDHSISVTVNLPETATEELVDRLYRE 651

Query: 892 AWLMGLKTTYYLRSRSATSV 911
           AW +G K     R+ S  +V
Sbjct: 652 AWKVGCKGVTIYRAGSRGNV 671


>gi|317475578|ref|ZP_07934840.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908282|gb|EFV29974.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 845

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 171/704 (24%), Positives = 293/704 (41%), Gaps = 120/704 (17%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           L + F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +D         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATD--------- 242

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576
                            VF+K I+A  LW+K++   +++  P + F D     S P  + 
Sbjct: 243 ----------------PVFKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286

Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
            + +   S+N C EI L         C L +INL ++  N       FD+D     +  A
Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342

Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTH--------------RAIGLGLMGFQ 664
            R++D++ID+    IE+          ++   HT               R  G+G+    
Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E A++  + ++  A  +SV +A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYDSEREKNNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLYVK--------SNMSGDFT-----VVNSFLVNELKQRDLWDEAMISD--LKYHDG 829
            +  +Y +        SN+  DF          ++V   K    W EA   D   +Y   
Sbjct: 506 VFLPVYKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKFV-TWMEAEGYDPAKRYTQE 564

Query: 830 SIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
            I   +E+ P       AT+ ++D +  ++   R QKW+D + S+ + L     ++L + 
Sbjct: 565 EIDALVEKSP----YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNR 620

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +Y +AW  G K     R  S + V  ST      K N +P   P
Sbjct: 621 LYVEAWKSGCKGCTVYRDGSRSGVLISTKS---DKKNELPPCKP 661


>gi|114776813|ref|ZP_01451856.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
 gi|114552899|gb|EAU55330.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
          Length = 723

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 165/677 (24%), Positives = 286/677 (42%), Gaps = 87/677 (12%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKETE--KEK 337
           ANDL  E    F+     I   +Y L    G  I++  QA + RVA  LA  E E  +E 
Sbjct: 17  ANDLPAE--IPFQPASEDIWDKKYRLKDKLGREIDLDIQATYDRVATALAQVENEDVREL 74

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTR--HPQLSSCFLT---TVPDDLYGIFGALQENAM 392
               F   L++   + +   + N+G     P  S+   T   T+PD + GI   + E  +
Sbjct: 75  WHERFVWALAN-GAIPAGRIMSNAGAEAHKPATSTINCTVSGTIPDSMTGILSMVHEAGL 133

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
             K   G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     
Sbjct: 134 TLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPMSFMDIYDKMCFTVSSAGGRRGAQMGTF 193

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EF+  ++  G    R    N +  I   FM+ V  +A W L  P   +++ D
Sbjct: 194 DISHPDIVEFIRAKREDG----RLRQFNLSCLITRDFMEAVKHDADWDLVFPASQTEIDD 249

Query: 513 LYGKEFEIAYENYERQA---DRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              +       N  + +   DRG +  KV++ + AV LW  ++   ++   P     D  
Sbjct: 250 ADTRIVFKPVANPPKGSVKDDRGHVACKVYKTMKAVRLWDVIMASTYDYAEPGFILIDEV 309

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QFDYDKLA 622
           N  +       V ++N C E  L         C LGS+NL       F +N +FD+D   
Sbjct: 310 NEMNNNWFCEDVRATNPCGEQPL----PPYGACLLGSVNLTRFVRDPFTDNARFDWDTYR 365

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +    R+LDNV++IN   +EK ++     R  G+G +G  S L +L  PY S E++  
Sbjct: 366 EVVSIFTRMLDNVVEINGLPLEKQRQEIMRKRRHGMGFLGLGSTLTMLRTPYGSTESLAF 425

Query: 683 ADESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPIDSIG-- 727
            ++    ++       +EL  E+GA  +              +  + D G+   D +   
Sbjct: 426 TEQIAYEMARTGFQTGLELVDEKGAAPALTDLYEITPEMMAKRPEMADDGIKIGDMVAGK 485

Query: 728 --------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANI 775
                    + + RD       + L  DEL ++    G R ++  +IAPT TI    AN 
Sbjct: 486 VLWGKYSRYMQKFRDTANAEDAAML--DELIEK----GCRFTHHSSIAPTGTISLSLAN- 538

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              S  I+PS+ + Y ++            ++ E ++     +    +L  +   I N +
Sbjct: 539 -NASNGIEPSFAHHYSRN------------IIREGRKSKEKVDVFSYELLAYRAHI-NAD 584

Query: 836 RIP---DDLKKI---HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDF 887
            +P   D+  K+     +A E+ P   ++  +  Q+W+D   +++ N+  + P  +  D 
Sbjct: 585 AMPYATDENAKLPDYFISADEVTPKQHVDIQAAAQRWVDSSISKTANVPTEFPYDEFKD- 643

Query: 888 IYRQAWLMGLKTTYYLR 904
           IY  A+  GLK     R
Sbjct: 644 IYLYAYEQGLKGCTTFR 660


>gi|119485474|ref|ZP_01619802.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457230|gb|EAW38356.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 171/335 (51%), Gaps = 29/335 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  DG+    +  ++  +V  AC GL D +   + +     + DG++  +++  LI
Sbjct: 15  EIQVIRRDGSRADLDISKIRNVVNWACEGL-DANPITLEAGLTTRLRDGVTTREIQDNLI 73

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  L    EP++  V  R  +  L ++ L               +    E + R +E 
Sbjct: 74  NCALELCSPSEPDWRYVAGRLHIWSLWKDTLAN-------------RGYRYEDYARTVES 120

Query: 263 GVK-----ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            VK     +R+L  +  +        D ++++D+  +Y G  +L  RY L       E+P
Sbjct: 121 KVKNHEYDSRILTYNPEELQQAGTWIDPQWDKDY--DYAGAVLLTKRYLLTN-----ELP 173

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q   +  A+ LA+ E  + +   A +FY  ++      +TP L N    +  LSSCF+T+
Sbjct: 174 QEALLTCALLLAVVEKPENRLFWARQFYEAIAKRKISLATPILGNLRIPNGSLSSCFITS 233

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D+L  IF A+++ A ++K  GG+G + + VR  G+ + G    S GVIP++K+ NDTA
Sbjct: 234 MDDNLESIFDAIKDAARISKNGGGVGTNVSRVRATGSWVMGKENTSGGVIPWIKLLNDTA 293

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           +AVNQGG+R GA+   L+ WH+DV EFL+++   G
Sbjct: 294 IAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENG 328


>gi|313680374|ref|YP_004058113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153089|gb|ADR36940.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 961

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 226/504 (44%), Gaps = 80/504 (15%)

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL---DLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           V QGG R+GA  A ++  H DV +FL   DL +   +    T   N +    D F++ + 
Sbjct: 292 VRQGGTRRGAGMATIDVAHPDVLDFLTAKDLDREAAEGDIST--FNISILATDAFVEALE 349

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF----EIAYENYERQADRGE-----IKVFRK-ISAVA 544
           ++  W +        L  + GK +    E AY     +    E     + V+   + A  
Sbjct: 350 KDELWPV-------RLRPVPGKYYLQPVEGAYTGEWPELGVAEDGARPVPVYEGGVPARW 402

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCN 601
           +W ++    + TG P + F D  N +S  + +G    + ++N C EI L         C+
Sbjct: 403 IWHEVAWHAWATGEPGLIFIDRVNEKSALKGLGERWQIRATNPCGEIPLTVGEP----CD 458

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LG++NL A+  +  FDY+     +RTAVR LDNV+D+N   +E  ++++   R +GLG+M
Sbjct: 459 LGALNLAAYVEDGAFDYEAFRRDVRTAVRFLDNVLDVNVFALEDNREASQQLRRLGLGVM 518

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   AL  + +PY S  A E   + M  +   A++AS  L  ERG             VF
Sbjct: 519 GLADALIKMGLPYDSEAAREAVWKIMSVMREEALAASEALGAERG-------------VF 565

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           P+          +E A          E   R+     RN   + +APT T + + GVS  
Sbjct: 566 PL---------YEEEA----------EYFGRMGIKPRRNLAVLTVAPTGTTSMLMGVSSG 606

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----------DLWD-EAMISDLKYHDGS 830
           I+P + + +V   + G++  +   L  EL ++            WD + +I+ ++ + GS
Sbjct: 607 IEPVF-SPFVWRRIGGEYKPLVHPLFQELMEQHPPHPDWEKDGTWDWDKLIAAIQENHGS 665

Query: 831 IGNIERIPDDLKKIHATAFEIDPM------WLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
           +  +E +P+ ++ +   A ++ P+       +++ A   + ++  + S  + L  E S +
Sbjct: 666 VQGLEVVPESIRAVFKCAHDVSPLDHVRMQGVVQRAFDAEGYVGNSLSKTINLPHEASVE 725

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
            ++  Y +A+  G K     R  S
Sbjct: 726 DVEAAYTEAYRTGCKGVTVYRDGS 749



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 35/151 (23%)

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             F RVA  +AL E E  +   A  FY L+++  F      L  +GT H  + +CF+   
Sbjct: 28  GIFRRVADWVALPEDEATRSGWADTFYELMATKRFCPGGRVLAGAGTAHGNVLNCFVQGA 87

Query: 377 ----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
               P    GI    ++ A++ K  GG G +  P                       V  
Sbjct: 88  TAHPPASFEGIMEVAKKLALVTKVGGGNGVNLDPY----------------------VYR 125

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  V V +G        AY++  H DVE+F+
Sbjct: 126 ERPVGVVRG-------IAYMDAAHRDVEDFI 149


>gi|262275642|ref|ZP_06053451.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
 gi|262219450|gb|EEY70766.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
          Length = 718

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 156/630 (24%), Positives = 266/630 (42%), Gaps = 70/630 (11%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT- 374
           F RVA  LA  E E  +EK   EF   L          T       H   +S   C ++ 
Sbjct: 50  FKRVARALADLEEESVREKWYNEFLWALRHGAIPAGRITSNAGAFEHKPATSTINCTVSG 109

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I G + E  +  K   G+G D++ +R  GA + G    + G + F+ + +  
Sbjct: 110 TIEDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKM 169

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA    ++  H DV EF+  ++  G    R    N +  I + F++ V 
Sbjct: 170 CFTVSSAGGRRGAQMGTMDIRHPDVMEFIRAKREDG----RLRQFNLSLLITEEFIEAVK 225

Query: 495 QNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFRKISAV 543
            +  W L  P    +   D  DLY  +  I + ++  +      D+G +  K++R + A 
Sbjct: 226 NDGEWQLIFPVTEKEARQDGTDLYNDD-NIVWADWPSKEGLLEDDQGRVACKIYRTMPAR 284

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +++  ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 285 NLWNVIMSSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPP----YGACLLG 340

Query: 604 SINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL          N +FD++     +    R+LDNV++IN   +EK ++   T R  G+
Sbjct: 341 SVNLTKFVRDPFTENARFDWEMYRKVVAIFTRMLDNVVEINQLPLEKQREEIQTKRRHGM 400

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------- 711
           G +G  S L +L   Y S  ++   ++  + ++      +V+LA E+G            
Sbjct: 401 GFLGLGSTLTMLRHKYGSAASIAFTEQISQEMAITGWEQAVKLAAEKGPAPVMEQEFEVT 460

Query: 712 ------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
                 +  +   G+   D + G +   +    M +   +  D ++K V+T G R ++  
Sbjct: 461 PKMMRQRPEMAKDGIKVGDKVKGKVLHAKYSRYMQQIGEVRPDLIEKLVET-GGRFTHHS 519

Query: 765 AIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWD 817
           +IAPT TI    AN    S  I+PS+ + Y ++ +         V+ F    L  R+L +
Sbjct: 520 SIAPTGTISLSLAN--NASNGIEPSFAHHYTRNVIKPGKKSKESVDVFSFELLAYRELIN 577

Query: 818 -EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
            +AM    K         E++P+       TA +I P   +E  +  Q+WID   +++ N
Sbjct: 578 AKAMPYSTKEE-------EQLPE----YFITADDITPSQHVEVQAAAQRWIDSSISKTAN 626

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IY  A+  GLK     R
Sbjct: 627 VPTDFPFENFKD-IYMDAYDKGLKGCTTFR 655


>gi|254881426|ref|ZP_05254136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642814|ref|ZP_07997452.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
 gi|254834219|gb|EET14528.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385558|gb|EFV66499.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
          Length = 848

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYQNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +                     
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
             + Y   +D+    VF K I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + EA E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E ++   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKP 664


>gi|268323545|emb|CBH37133.1| putative intein containing ribonucleotide reductase, large subunit
           [uncultured archaeon]
          Length = 919

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 40/285 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSIN+     N + D+++L   + ++VR LD+VID N + + K +K    +R IGLG
Sbjct: 616 CNLGSINVSKFVENGEIDWERLKEAVWSSVRFLDDVIDENRYPLSKIEKMTKANRKIGLG 675

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG    L  L I Y S +AV +A++ M+FI+  A   S EL  E+G++ +F+ S+W   
Sbjct: 676 IMGLAELLIKLKIAYDSKDAVLMAEKLMQFITNEARQCSTELGLEKGSFPNFELSVWST- 734

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                     +D          MRN+    IAPT TI  I   S
Sbjct: 735 --------------------------YD---------AMRNATVTTIAPTGTIGIIGNCS 759

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P +   +V+ N+ G    +N       K++  + + +I+++    GSI +I  IP+
Sbjct: 760 SGIEPLFAVAFVR-NVMGGMLEINKLFEEIAKEKGFYSKELIAEIAKR-GSIQDIAGIPE 817

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSG 882
           D+K++  TA +I P W +   +  Q++ D A  +++NL  D   G
Sbjct: 818 DIKRVFVTALDISPEWHVRMQAAFQRYTDNAVSKTVNLPSDATRG 862



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 138/296 (46%), Gaps = 40/296 (13%)

Query: 299 QILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFH 350
           ++L  RY L     R IE P   F RVA  +A  E    K   E       FY L+ S  
Sbjct: 36  EVLKRRYLLKDELERVIETPSQMFARVAKAIARAEQNYGKSKAEVKKIEQRFYLLMHSLE 95

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+GT   QL++CF+  V D + GIFGA+++ A + +  GG G  ++ +R  
Sbjct: 96  FLPNSPTLMNAGTDLGQLAACFVIPVEDSIEGIFGAVKDMARIHQSGGGTGFSFSRLRPK 155

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  +  T G + G + F++V +     + QGGKR+GA    +   H D+ EF+  +    
Sbjct: 156 GDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMGIICADHPDILEFIRAK---- 211

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +R    + NT+  + D FM  V +N  + L +P    ++                    
Sbjct: 212 -ERGEFANFNTSVAVTDEFMHAVDRNEEYELINPRTKEEV-------------------- 250

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  RKI A  ++ +++T  ++ G P I F D  N  +P   VG + ++N C 
Sbjct: 251 -------RKIKAGEVFNEIVTYAWKIGDPGIIFLDEINRHNPVSAVGRIEATNPCV 299


>gi|152985283|ref|YP_001351609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
 gi|150960441|gb|ABR82466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
          Length = 714

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 151/572 (26%), Positives = 249/572 (43%), Gaps = 70/572 (12%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 108 TIQDSMDDILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 167

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 168 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 223

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEI--KVFRKISAV 543
           Q+A W L  P      DE+ DL D   +  +E+    +NY ++AD G +  KV+ ++ A 
Sbjct: 224 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPTQ-DNYVQRAD-GLVACKVYGQVRAR 280

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  ++   ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 281 HLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLG 336

Query: 604 SINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL       F +  +FD+D+    +R   R+LDNV++IN   +++ ++     R  G+
Sbjct: 337 SVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLQQQRQEILGKRRHGM 396

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSF 711
           G +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y   
Sbjct: 397 GFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVT 456

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNC 763
              L  +     D   +   +R  +   + SR         P  EL + +   G R ++ 
Sbjct: 457 AEMLRKRPEMAADGYKVGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHH 514

Query: 764 MAIAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R 
Sbjct: 515 SSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRT 570

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQS 872
           L +   + D      S     R+PD       TA  + P   ++  +  QKW+D   +++
Sbjct: 571 LVNAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWVDSSISKT 620

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            N+  D P     D IYR AW  GLK     R
Sbjct: 621 ANVPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 651


>gi|294775362|ref|ZP_06740884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
 gi|294450819|gb|EFG19297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
          Length = 848

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +                     
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
             + Y   +D+    VF K I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + EA E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E ++   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664


>gi|54309322|ref|YP_130342.1| hypothetical protein PBPRA2142 [Photobacterium profundum SS9]
 gi|46913758|emb|CAG20540.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 716

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 163/663 (24%), Positives = 279/663 (42%), Gaps = 72/663 (10%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           D A++   ++I   +Y L   +G  I E     F RVA  LA  + EK+K    +YN   
Sbjct: 15  DIAYQSTSMEIWDSKYRLKTKHGIAIDETVDDTFKRVARALA--DLEKDKVKEHWYNEFL 72

Query: 348 SFHFMCSTPT---LFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYSGG 399
                 + P      N+G     P  S+   T   T+ D +  I G + E  +  K   G
Sbjct: 73  WALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCG 132

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+
Sbjct: 133 IGYDFSTLRPRGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDI 192

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLH- 511
            +F+  ++  G    R    N +  I + F++ V  +  W+L  P        +  DLH 
Sbjct: 193 IDFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDNLDLHT 248

Query: 512 --DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
              +   ++ +     E +  R   K++R + A  LW  ++T  ++   P     D  N 
Sbjct: 249 DSSVMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQ 308

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QFDYDKLAST 624
            +       + ++N C E  L         C LGSINL       F N   FD+D     
Sbjct: 309 MNNNWFCEEIRATNPCGEQPL----PPYGACLLGSINLTKFVRDPFTNTAAFDWDGFRRV 364

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + T  R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S  ++   +
Sbjct: 365 VATFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLKHKYGSAASIAFTE 424

Query: 685 ESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPIDSI-GLLA 730
           +  + ++      ++ LA+E+GA                 +  + D G+   D I G + 
Sbjct: 425 QVAQELAITGWKEALSLAKEKGAAPVMEQEFTITAKMIRQRPEMADDGIKVGDKIKGKVL 484

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDPSY 786
             +    M + + +   EL + + T+G R ++  +IAPT TI    AN    S  I+PS+
Sbjct: 485 HAKYSRYMQQVAEIE-PELIEALSTVGARFTHHSSIAPTGTISLSLAN--NASNGIEPSF 541

Query: 787 QNLYVKSNM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
            + Y ++ + +G  T   VN +    L  R+L +       K    S     ++P+    
Sbjct: 542 AHHYTRNVIVTGKKTKENVNVYSFELLAYRELVNS------KAMPYSTDEETQLPE---- 591

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
              TA +I P   ++  +  Q+WID   +++ N+  D P     D IY  A+  GLK   
Sbjct: 592 YFITADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQD-IYMNAYDKGLKGCT 650

Query: 902 YLR 904
             R
Sbjct: 651 TFR 653


>gi|194246585|ref|YP_002004224.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
 gi|193806942|emb|CAP18374.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
          Length = 830

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 165/699 (23%), Positives = 296/699 (42%), Gaps = 98/699 (14%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA--FEYLGLQILYDRYFLHINGSRIEM 316
           Y +E +K +L +   +   + YL  +  YE+DF   + Y  ++ +Y          +I  
Sbjct: 167 YFKEEIKPKLKYFYSLKAKIDYLLENNYYEKDFFNHYTYEQIKTIY----------QIAY 216

Query: 317 PQAFFMRVAMGL-------ALKETEK-------EKRAV--EFYNLLSSF----------- 349
            + F     MG+       ALK   K       E R V    Y+   +F           
Sbjct: 217 AEKFQFASFMGIFKFYNDYALKNRNKTKYLETYEDRLVVNALYHAHGNFILAKKLIKSLI 276

Query: 350 --HFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             +F  +TPTL NSG ++  +  SCFL    D L  I    + +  L+K  GG+  + + 
Sbjct: 277 QQNFTPATPTLLNSGKKYRGEFVSCFLIEGGDSLNDIARIFEFSMQLSKIGGGVSINLSN 336

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I       +GV+   K+ +      +Q G+R GA   YL  +H D+++FL+ +
Sbjct: 337 LRAKGETIKKNANVCKGVVGVCKLLDHGFRYADQMGQRNGAGAVYLNVFHADIKDFLNTK 396

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D+  R   ++    IPD  ++    N    +F P  V      YG+ F     N +
Sbjct: 397 KLNADEDVRVKTLSLGVVIPDKMLELAKNNEMMYIFYPHTV---FLEYGQNFADISINMD 453

Query: 527 RQAD---RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
              D   +      + I+   L   +  +  E+G+P+I + D  N+         +  SN
Sbjct: 454 YWYDILVKNSKIKKKIINPRNLLDLIAQLQGESGYPYIMYCD--NVNKNNMLNLPIKFSN 511

Query: 584 LCTEI---TLNS------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           LCTEI   T+ S        EE  +    S NL +    N    + +  T+  A+ V+++
Sbjct: 512 LCTEILQPTITSHYADYDKREEDRIGMDISCNLSSGHMGNMIKNNSIKETVFMAMEVMNS 571

Query: 635 V-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V ++ +   +    K+N  +R++G G+MG    +    I + S E +++ D     ++++
Sbjct: 572 VALNTDIAYVPGVAKANRLNRSVGFGIMGHHEFIAKNFIFFGSEEDLDLIDVFFNAVNYY 631

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----WDE 748
           ++  S++ A+  G  + +F  S +  G +  +   +L +      + +  +LP    W E
Sbjct: 632 SLLHSMQKAKTTGQKFFNFSKSKYADGSYFNNRGEILPKNIKVKNIFKHIKLPSNKDWTE 691

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK  V   G+ NS+ +A+AP  +I  I   + S+ P                        
Sbjct: 692 LKTNVIKYGLYNSHRLAVAPNGSIGYIMSTTPSLTP------------------------ 727

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            +KQ  L +E    + K +  + G      +    ++ TA++I+   LI+  +  QK ID
Sbjct: 728 -IKQ--LIEERTYGNSKTYFPTPG-----LEQFSFMYETAYKINKYRLIDVIATAQKHID 779

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L +  + + ++L   Y  A   G+KT YY R++
Sbjct: 780 QGISFELGITSDITTRELQKYYLYAHYQGIKTLYYTRTQ 818


>gi|160885202|ref|ZP_02066205.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|237714835|ref|ZP_04545316.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237720010|ref|ZP_04550491.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260174146|ref|ZP_05760558.1| putative ribonucleoside reductase [Bacteroides sp. D2]
 gi|262406893|ref|ZP_06083442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|293368853|ref|ZP_06615457.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|294643070|ref|ZP_06720909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294807801|ref|ZP_06766591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|299147888|ref|ZP_07040951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|315922411|ref|ZP_07918651.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109552|gb|EDO11297.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|229445160|gb|EEO50951.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229450562|gb|EEO56353.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262355596|gb|EEZ04687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|292636158|gb|EFF54646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|292641589|gb|EFF59768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294444998|gb|EFG13675.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298514071|gb|EFI37957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|313696286|gb|EFS33121.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 847

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 167/700 (23%), Positives = 299/700 (42%), Gaps = 109/700 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+             DE       Y +++
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAV----------DEKP-----YVQQY 236

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
            I         D  +    ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 237 PI---------DSAQPTFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD+D     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+           ++  H  RA+              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  LA    +L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 IQRLAAADPKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836
           +  +Y  +  ++ + T V+   V+E    D ++E ++   K+        +D +    + 
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPARRYTQE 564

Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
             D+L        AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +
Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R  S + V  ST    D K    P   P
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664


>gi|298479867|ref|ZP_06998067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
 gi|298274257|gb|EFI15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
          Length = 847

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 167/700 (23%), Positives = 299/700 (42%), Gaps = 109/700 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+             DE       Y +++
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAV----------DEKP-----YVQQY 236

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
            I         D  +    ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 237 PI---------DSAQPAFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD+D     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+           ++  H  RA+              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  LA    +L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 IQRLAAADPKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836
           +  +Y  +  ++ + T V+   V+E    D ++E ++   K+        +D +    + 
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPARRYTQE 564

Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
             D+L        AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +
Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R  S + V  ST    D K    P   P
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664


>gi|150002611|ref|YP_001297355.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
 gi|149931035|gb|ABR37733.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
          Length = 848

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 168/702 (23%), Positives = 293/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +                     
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYK-------------------- 233

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
             + Y   +D+    VF K I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 234 --QQYPVDSDQ---PVFTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + EA E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E ++   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKP 664


>gi|152974879|ref|YP_001374396.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023631|gb|ABS21401.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 462

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 218/484 (45%), Gaps = 55/484 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    +SA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKSLDLSARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           FK   N + P +++G V  SNLCTEI  L  +SE               CNLGS+N++  
Sbjct: 122 FKSNANQQHPLKNIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N +   + + + +     V D  +  N  T++KA    H+   +GLG M     L   
Sbjct: 182 MENKEIR-EAVHAGMEALTAVSDMTVIPNAPTVKKANDELHS---VGLGAMNLHGYLAKN 237

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PID 724
            I Y S EA E        +++++I  S+ +A+E+G  +  F  S +  G +       D
Sbjct: 238 KIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETTD 297

Query: 725 SIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
              +  +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+ 
Sbjct: 298 YSPVTEKVQQLFEGIYIPTKEDWTSLKEEVQKYGLYNSYRLAIAPTQSISYVQNATSSVM 357

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P                     +V++++ R   +      + Y          +  D   
Sbjct: 358 P---------------------IVSQIESRTYANATTYYPMPY----------LSKDTFW 386

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY
Sbjct: 387 YYKSAYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYY 446

Query: 903 LRSR 906
            R+R
Sbjct: 447 TRTR 450


>gi|160889318|ref|ZP_02070321.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|317479653|ref|ZP_07938778.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
 gi|156861325|gb|EDO54756.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|316904218|gb|EFV26047.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
          Length = 845

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 164/697 (23%), Positives = 300/697 (43%), Gaps = 113/697 (16%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           +D  Y    LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E 
Sbjct: 8   YDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEA 63

Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385
           +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D YG IF 
Sbjct: 64  KYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFK 123

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R 
Sbjct: 124 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR- 182

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  + D FM+   +   +T   P 
Sbjct: 183 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPI 238

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           + +          E A++              + I A ALW+K++   +++  P + F D
Sbjct: 239 DAT----------EPAFQ--------------KDIDASALWKKIVHNAWKSAEPGVLFWD 274

Query: 566 PCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  + +   S+N C EI L         C L +INL ++  N       F
Sbjct: 275 TILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYF 330

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEK----------AKKSNHTHRAI---------- 656
           D++     +  A R++D++ID+    IE+          ++   HT R +          
Sbjct: 331 DFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQ 390

Query: 657 ----GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
               G+G+      L  L + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  + 
Sbjct: 391 GRRTGVGITAEGDMLAALGLRYGTEEATEFSEQVHKTVALNAYRSSIEMAKERGAFEVYD 450

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                   F    I  L E   E+         ++E+KK     G RN  C+ IAPT T 
Sbjct: 451 TEREKNNPF----INRLREADPEM---------YEEMKK----YGRRNIACLTIAPTGTT 493

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK------ 825
           + +   +  I+P +  +Y  +  ++ + T V+   ++E    D ++E ++   K      
Sbjct: 494 SLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWME 551

Query: 826 ---YHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
              Y+       E +   ++K     AT+ ++D +  ++   R QKW+D + S+ + L  
Sbjct: 552 AQGYNPAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPN 611

Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              + L + +Y +AW  G K     R  S + V  ST
Sbjct: 612 DVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 648


>gi|90410606|ref|ZP_01218622.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
 gi|90328847|gb|EAS45131.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
          Length = 716

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 161/674 (23%), Positives = 280/674 (41%), Gaps = 78/674 (11%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
           A+++    D A++   ++I   +Y L   +G  I E     F RVA  LA  + EK+K  
Sbjct: 7   ASEVSQTIDIAYQSTSMEIWNSKYRLKTKHGIAIDETVDDTFKRVARALA--DLEKDKVK 64

Query: 340 VEFYNLLSSFHFMCSTPT---LFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENA 391
             +YN         + P      N+G     P  S+   T   T+ D +  I G + E  
Sbjct: 65  EHWYNEFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAG 124

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +  K   G+G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    
Sbjct: 125 LTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGT 184

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP------- 504
           ++  H D+ +F+  ++  G    R    N +  I + F++ V  +  W+L  P       
Sbjct: 185 MDIRHPDIIDFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAK 240

Query: 505 DEVSDLH---DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            +  DLH    +   ++ +     E +  R   K++R + A  LW  ++T  ++   P  
Sbjct: 241 QDKLDLHTDSSIMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGF 300

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANN-QF 616
              D  N  +       + ++N C E  L         C LGSINL       F N   F
Sbjct: 301 ILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSINLTKFVRDPFTNTAAF 356

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D     +    R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S
Sbjct: 357 DWDGFRRVVAIFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLTHKYGS 416

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPI 723
             ++   ++  + ++      ++ LA+E+GA                 +  + D G+   
Sbjct: 417 AASIAFTEQVAQELAISGWKEALSLAKEKGAAPVMDQVFTITAKMMRQRPEMADDGIKVG 476

Query: 724 DSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGV 778
           D I G +   +    M + + +   EL + + T+G R ++  +IAPT TI    AN    
Sbjct: 477 DKIKGKVLHAKYSRYMQQVAEIE-PELIEALSTVGARFTHHSSIAPTGTISLSLAN--NA 533

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+PS+ + Y +           + +V   K ++  D      L Y +  + N + +P
Sbjct: 534 SNGIEPSFAHHYSR-----------NVIVTGKKTKESVDVYSFELLAYRE--LVNSKAMP 580

Query: 839 ------DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYR 890
                   L +   TA +I P   ++  +  Q+WID   +++ N+  D P     D IY 
Sbjct: 581 YSTDEETQLPEYFITADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQD-IYM 639

Query: 891 QAWLMGLKTTYYLR 904
            A+  GLK     R
Sbjct: 640 NAYDKGLKGCTTFR 653


>gi|254455135|ref|ZP_05068570.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263545|gb|EDY87817.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 535

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 151/599 (25%), Positives = 254/599 (42%), Gaps = 98/599 (16%)

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTV 376
           + RVA GLA  +    ++K   +F+  +  F  +     L   GT RH  L + F + T+
Sbjct: 5   WARVANGLAAHKALAVRDKVVTDFHAAMHDFKVLPGGRILSGCGTARHVTLCNTFVMRTI 64

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD + GI   L++ A+  +  GG+G D++ +R  G  + G + ++ G +  + + + T  
Sbjct: 65  PDSVDGIMDTLKDAALTMQMGGGVGFDFSMLRPSGTVVRGLDCRAAGPLAAMDIFDATCK 124

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            +  G  R GA+ A +   H ++E F+    N   DR R  + N +    + FM  +  +
Sbjct: 125 MIVSGMGR-GAMMATMRCDHPNIEAFI----NAKSDRTRLRNFNMSVMATNEFMAAIAAD 179

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W L                               +  V R++ A  LW  ++   +  
Sbjct: 180 ETWDLV-----------------------------WQGAVMRRLRARDLWNAIMKQTYAA 210

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFA 612
             P + F D  N  +P +++ V+ ++N C E  L         C L SINL     A F 
Sbjct: 211 AEPGVLFIDRINAVNPLRYLEVIAATNSCAEQPL----PPNGTCPLASINLAQLVSAPFT 266

Query: 613 NN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            + + D  +L   +R AVR+ DN +D++   ++  ++     R IG+G+ G  +A+ ++ 
Sbjct: 267 TDARLDVTQLRQLVRVAVRMFDNSLDVSRFALDAQRQQAQDQRRIGVGVTGVANAIAMMG 326

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI-DSIGLLA 730
           + Y S +AV +    M+ I   A  AS  LA ERGA             FP+ D+   LA
Sbjct: 327 VRYGSSKAVFLLGSWMQTIQNAAYGASALLANERGA-------------FPLYDADKHLA 373

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNL 789
             R   A+N+       +++  V+  G+RN     IAPT T +     VS  I+P +   
Sbjct: 374 S-RGIQALNQ-------DIRALVEQHGLRNGTLTTIAPTGTTSMFAENVSSGIEPIFSTS 425

Query: 790 YVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHA 846
           + ++      T  N    +E +     W  A I   +    D  +   +  PDD   + A
Sbjct: 426 FTRT-----ITKANGEKSSERVMDYAAWQFAQIYGPNAALPDSFVTVADLSPDDHIAMQA 480

Query: 847 TAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
            A               Q+WID   ++++N   D P  +    IYR A+  G K  TTY
Sbjct: 481 AA---------------QEWIDSGISRTVNCPEDIPF-EAFKGIYRAAYDAGCKGCTTY 523


>gi|121997262|ref|YP_001002049.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
 gi|121588667|gb|ABM61247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
          Length = 721

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 152/627 (24%), Positives = 263/627 (41%), Gaps = 62/627 (9%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHF--MCSTPTLFNSGT--RHPQLSSCFLT-- 374
           + RVA  LA  E  + K+   F   L +     + +   + N+G     P  S+   T  
Sbjct: 51  YQRVARALAEVEETEAKQEHWFERFLWALRHGAVPAGRIISNAGAWDHKPATSTINCTVS 110

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D + GI   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 111 GTIHDSMDGILKRVHEAGLTLKSGAGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 170

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I D FM+ +
Sbjct: 171 MCFTVSSAGGRRGAQMATFDVGHPDVTDFIRAKREDG----RLRQFNLSLLITDAFMQAM 226

Query: 494 TQNAGWTLFSP---DEVS----DLHD---LYGKEFEIAYENYERQAD-RGEIKVFRKISA 542
             +  W L  P   DEV+    DL D   +  +E+    E Y    + R   +++R++ A
Sbjct: 227 EADEEWPLAFPLTDDEVAAEGIDLQDPEQVLWREWPTR-EGYVTDGEGRVACRIYRRVKA 285

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++T  ++   P     D  N  +       + ++N C E  L         C L
Sbjct: 286 RHLWNLIMTSTYDYAEPGFILIDQYNELNNNWFCEEIRATNPCGEQGLPP----YGACLL 341

Query: 603 GSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           GSINL     +      +FD+++    +    R+LDN ++IN   +E+ +      R  G
Sbjct: 342 GSINLTMFVRDPFTPQARFDWEEFREAVAVFTRMLDNTVEINGLPLEQQRAEIQRKRRHG 401

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSS 710
           +G +G  S + +L + Y    +V   +E  + ++       +ELA+E+G        Y  
Sbjct: 402 MGFLGLGSTVTMLRMKYGDAASVAFTEEVAKQMALTGWRTGLELAKEKGPAPIMEEIYEI 461

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL------PWDELKKRVKTIGMRNSNCM 764
               +  +     D   +  ++   +   R SR          EL   +  IG R ++  
Sbjct: 462 TPELMRKRPELREDGYEVGEQIPGRVLWGRYSRYMQRIADEEPELVDELAQIGARFTHHS 521

Query: 765 AIAPTATIANICG--VSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELKQRDLWDEA 819
           +IAPT TI+       S  I+PS+ + YV++ +  G  T   V+ F    L  R   D  
Sbjct: 522 SIAPTGTISLSLANNASNGIEPSFAHHYVRNVIREGRKTKEPVDVFSFELLAYRHFID-- 579

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877
              D     G  G   ++PD       +A ++ P   ++  +  QKW+D   +++ N+  
Sbjct: 580 --GDALPEGGEEGQ-GKLPD----YFISADQVTPKQHVDIQAAAQKWVDSSISKTANVPT 632

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           D P     D IYR A+  GLK     R
Sbjct: 633 DYPYEDFKD-IYRYAYQQGLKGCTTFR 658


>gi|158335535|ref|YP_001516707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
 gi|158305776|gb|ABW27393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
          Length = 649

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 172/663 (25%), Positives = 283/663 (42%), Gaps = 97/663 (14%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNS--GTRHPQLSSCFLTTVP 377
           RVA  +A  E+  E+++    +F ++L    F+     L N   GTR   L +CF+ +  
Sbjct: 36  RVATYVASAESTPEQQSYWQEKFLSILQPMKFVPGGSILANCDHGTRG--LLNCFVLSAE 93

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTP------VRGLGAHIHGTNGKSQGVIPFLKVA 431
           D ++ I   + ++ +  K+ GG+G +         +R  GA     +GK+ G    L + 
Sbjct: 94  DHIHDITKLVSDSVLTTKFRGGVGINIGAEGSKGYIRQKGAPFQ--DGKALGPCAVLDMV 151

Query: 432 NDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           ++ +  +  G K R+GA    +   H D+ EF+  +  +      T D N A  + +   
Sbjct: 152 SENSKKITTGNKARRGAFLFSMNWKHPDIWEFIQAKTQS------TIDANFAKSVMEELA 205

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----GEIKV------FRKI 540
           +   Q+   +    +++  LH   G  +   + N E + DR      I V      F K+
Sbjct: 206 QLAQQDEP-SQGKQEKLKALHTEVGTAWVETHLNPEGKRDRRWHNANISVQLDDEFFAKL 264

Query: 541 -----SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
                 A  LW+ M      T  P +   D    RSP +    V  +N C EI L  +S 
Sbjct: 265 DQGDEEANKLWQAMAENAHATADPGLLLIDNAKRRSPIRDF--VTCTNPCGEIFLPPNS- 321

Query: 596 ETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKK 648
               CNLGS+ +L  F       N + D+D LA T+R A+R LDNV+D++   T ++   
Sbjct: 322 ---ACNLGSL-VLTKFVRRTAEGNIEIDWDDLAETVRIAIRFLDNVLDVSEFATPDQKHN 377

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG+   L L  IPY S   +E  D    +I+ HA   S  +A E+GA 
Sbjct: 378 VRDVFRQLGLGIMGWADYLKLARIPYDSARHLEEIDRWGSWIAAHAYRTSEAIAAEKGAC 437

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                 +WDQ +  I +        D               ++ +  +  RNS  ++IAP
Sbjct: 438 -----GVWDQ-IKDIQTGNPFERWMDSEGNYYNGTEAHHNDRQDLTQVPRRNSTVLSIAP 491

Query: 769 TATIANICGVSQSIDPSY-----QNLYVKSNMSGD--FTVVNSFLVN-ELKQRDLWDEAM 820
           T +IA +   S + +P +     + ++V ++ S      ++N +L    L + D      
Sbjct: 492 TGSIAQLAACSWAFEPDFGLTLWKQVFVDASRSQQNWVQILNPYLDELNLPEAD------ 545

Query: 821 ISDLKYHDGSIG--NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +++    GS+   N  +   ++ +    A EI P W I   S+ Q WID + S  + L 
Sbjct: 546 -AEIVKQTGSLADTNYGKQHPEIARSFKIAREIPPGWHILVQSKWQSWIDSSISKTINL- 603

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV----DGKLNAVPVTDPNSS 934
            P+   +D I         K  Y L        EK+ LKGV     G L++ P+   NS 
Sbjct: 604 -PAHATVDEI---------KQIYRL-------AEKAGLKGVTIYRSGTLDSEPIKVGNSE 646

Query: 935 THS 937
             S
Sbjct: 647 KDS 649


>gi|270295907|ref|ZP_06202107.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273311|gb|EFA19173.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 845

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 164/697 (23%), Positives = 300/697 (43%), Gaps = 113/697 (16%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           +D  Y    LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E 
Sbjct: 8   YDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEA 63

Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385
           +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D YG IF 
Sbjct: 64  KYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFK 123

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R 
Sbjct: 124 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR- 182

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  + D FM+   +   +T   P 
Sbjct: 183 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPI 238

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           + +          E A++              + I A ALW+K++   +++  P + F D
Sbjct: 239 DAT----------EPAFQ--------------KDIDASALWKKIVHNAWKSAEPGVLFWD 274

Query: 566 PCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  + +   S+N C EI L         C L +INL ++  N       F
Sbjct: 275 TILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYF 330

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEK----------AKKSNHTHRAI---------- 656
           D++     +  A R++D++ID+    IE+          ++   HT R +          
Sbjct: 331 DFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQ 390

Query: 657 ----GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
               G+G+      L  L + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  + 
Sbjct: 391 GRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEVYD 450

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                   F    I  L E   E+         ++E+KK     G RN  C+ IAPT T 
Sbjct: 451 TEREKNNPF----INRLREADPEM---------YEEMKK----YGRRNIACLTIAPTGTT 493

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK------ 825
           + +   +  I+P +  +Y  +  ++ + T V+   ++E    D ++E ++   K      
Sbjct: 494 SLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETG--DAFEEYIVFHPKFVTWME 551

Query: 826 ---YHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
              Y+       E +   ++K     AT+ ++D +  ++   R QKW+D + S+ + L  
Sbjct: 552 AQGYNPAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPN 611

Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              + L + +Y +AW  G K     R  S + V  ST
Sbjct: 612 DVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 648


>gi|120436488|ref|YP_862174.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
 gi|117578638|emb|CAL67107.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
          Length = 850

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 171/687 (24%), Positives = 287/687 (41%), Gaps = 118/687 (17%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE- 341
           LKY   F  + L  ++  ++Y L  +   I  + P     R+A  +A  E +      E 
Sbjct: 23  LKY---FKGDDLAARVWVNKYALKDSDGNIYEQTPDDMHRRIAKEIARVEKKYPNSMSED 79

Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAML 393
             ++L+ +F ++    +   +G  +P     LS+CF+     V D   GI    QE   L
Sbjct: 80  EVFDLIKNFKYIVPQGSPM-AGIGNPYQVGSLSNCFVIGNDGVSDSYGGIMKIDQEQVQL 138

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   + 
Sbjct: 139 MKRRGGVGHDLSHIRPKGSAVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSVS 197

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D E+F+D +   G    +    N +  I D FMK V  N  +T   P        +
Sbjct: 198 INHPDAEDFIDAKMEQG----KVTGANVSVRIDDNFMKAVKNNGNYTQTYP--------V 245

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSP 572
           + K                + K  + I A  LW+K++   +++  P I F D   N   P
Sbjct: 246 FSK----------------DPKFSKDIEADKLWKKIVHNAWKSAEPGILFWDTVINESVP 289

Query: 573 QQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLAST 624
             +  + +   S+N C EI L         C L +INL ++          F+Y+     
Sbjct: 290 DCYDDLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEEPFTEKAHFNYELFKKH 345

Query: 625 IRTAVRVLDNVIDINCHTIEK------------------------AKKSNHTHRAIGLGL 660
           I  A R++D++ID+    I+K                         +K     R  G+G+
Sbjct: 346 IGAAQRIMDDIIDLELEKIDKIIAKIDADPENEEVKAVEKNLWLNIRKKADEGRRTGIGI 405

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L  L I Y S E ++ + +  + I+  A  ASV+ A+ERGA+S F         
Sbjct: 406 TAEGDMLAGLGIRYGSKEGIDFSVDIHKKIALAAYRASVDTAKERGAFSIFDSEREKDNP 465

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F    I  L E  DE       +L +D L+      G RN   + IAPT T + +   S 
Sbjct: 466 F----ILRLKEA-DE-------KLYYDMLE-----YGRRNIALLTIAPTGTTSLMTQTSS 508

Query: 781 SIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDG 829
            I+P +  +Y    K N +     V+   V+E+   D W+E ++   ++        HD 
Sbjct: 509 GIEPVFLPVYKRRRKVNPNDKNARVD--FVDEVG--DSWEEYVVFHHRFKEWMRANGHDT 564

Query: 830 SIGNIERIPDDLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           +    +   D L K+     AT+ ++D +  ++     QKWID + S+ + L   + + L
Sbjct: 565 NENYTQEELDKLVKLSPYYQATSNDVDWLSKVKMQGAVQKWIDHSISVTINLPNDASEDL 624

Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSV 911
              +Y +AW  G K     R  S + V
Sbjct: 625 VGKLYLEAWEAGCKGVTVYRDGSRSGV 651


>gi|323705616|ref|ZP_08117190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535093|gb|EGB24870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1180

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 166/342 (48%), Gaps = 46/342 (13%)

Query: 579 VHSSNLCTEITLNSSSEETAV----CNLGSINL--LAHFANNQF--DYDKLASTIRTAVR 630
           V  S +C  I ++   E+  +    CNLGSINL  +    N ++  DY KL  T+  AV 
Sbjct: 671 VTHSMICNGIVVHQCGEQPLLPYESCNLGSINLKNMLKEENGKYEVDYGKLRDTVHNAVH 730

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + +++  +     R IGLG+MGF   L +L+IPY S EAVE AD+ M+FI
Sbjct: 731 FLDNVIDANKYPLQQIDEMTKGTRKIGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFI 790

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              + +AS+ELA++RG +  +  S++                                  
Sbjct: 791 DEESKAASMELAEKRGVFKYYDKSIY---------------------------------- 816

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNE 809
            + K I +RN+    IAPT TI+ I G S  I+P +     ++ M     V VN      
Sbjct: 817 -KDKNIRLRNATTTTIAPTGTISIIAGTSSGIEPLFAIAMTRNVMDNTQLVEVNPVFKEV 875

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
             +R  + E ++  +    G++  I+ IPDD+K++  TA +IDP+W I   S  QK +D 
Sbjct: 876 ALKRGFYSEELMKKIA-QQGTLKGIDGIPDDVKRVFVTAHDIDPVWHIRMQSAFQKHVDN 934

Query: 870 AQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           A S  + +  + +   +  +Y  A+ +GLK     R  S  S
Sbjct: 935 AVSKTVNFRHDATVDDVREVYELAYKLGLKGVTIYRDGSRDS 976



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 38/295 (12%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE------KEKRAVEFYNLLSSFHF 351
           ++L  RY     NG  +E  +  F RVA  ++  + E       EK   +FY ++++  F
Sbjct: 9   KVLERRYLAKDENGRVVETVEELFERVAKAISDVDKEYDINADTEKVKKKFYEMMTNLDF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R  G
Sbjct: 69  LPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRPKG 128

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  ++    
Sbjct: 129 ATVRSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFIQCKQ---- 184

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D     + N +  I + FMK V +   + L  P                 + N       
Sbjct: 185 DNNEITNFNISVGITEDFMKAVEKGQDYDLIDP-----------------HTN------- 220

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              KV + ++A  +++ ++ M ++ G P I F D  N ++P   VG + S+N C 
Sbjct: 221 ---KVVKSLNAREVFKLIVEMAWKNGEPGIVFLDRINEKNPTPLVGEIESTNPCV 272


>gi|219681362|ref|YP_002456126.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
 gi|199580629|gb|ACH89016.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
          Length = 744

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 192/804 (23%), Positives = 331/804 (41%), Gaps = 114/804 (14%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DGT+  F+  RL    E A +   D S   V  +  K  +DG + SDL+ A+I      I
Sbjct: 9   DGTVQPFDPSRLNRWAEWAANYGVDWSEIAV--DAVKRCHDGCTTSDLQWAMI---EACI 63

Query: 211 EKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +++   +A +  R L+  + +E      K P     ++                 K R L
Sbjct: 64  DRQTQAHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYD-----------------KMRTL 106

Query: 270 H--ESM--MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
           +  E M   D +L YL   + + +D  + Y  ++   D+Y +   +     E PQ  FM 
Sbjct: 107 NLWEDMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +A+ + ++   K++R    ++ Y  LS       TP L    ++    +SC +    D  
Sbjct: 167 MALAV-MQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTA 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A      +     G+G      R  G  +       QG  P+    N TAV  N+
Sbjct: 226 ESIGIAEHIAYTMTCKQAGIG-ILLQTRSKGDGVRNKTIVHQGKTPYFACIN-TAVKANK 283

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R G+          ++++ L L       +++   M+    I + F++RV ++  W 
Sbjct: 284 QQTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWM 343

Query: 501 LFSPDEVSDLHD-LYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           L S  +  +LH  +YG  + FE+ Y+   R  D  +    + +SA  L +  L   +ETG
Sbjct: 344 LVSFKDAPELHKRMYGSYELFEVEYDRVMRNPDIKK----KMVSARKLSKVFLKNRYETG 399

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVCNL 602
             +  F D  N  +P +    + +SNLC EI L + +                E A+C L
Sbjct: 400 RVYPFFTDNMNTHTPFEDT--IWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFL 457

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            SI  +A     + +Y+++A      + ++DNV+DI  +  E  KKS    R++G+G+  
Sbjct: 458 SSI--VAGRVKPE-EYEEVA---YYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITN 511

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L      Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P
Sbjct: 512 LAHYLASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTP 571

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQS 781
           ++      EV +   ++ T +  W +L K +K   G+R+S   A  P  + +     +  
Sbjct: 572 LEDYS--QEVDN--IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNG 627

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P                      V ELK             K   GS+  +    + +
Sbjct: 628 LYP----------------------VRELKMFK----------KSPQGSVFFLAPDSEVI 655

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL-------DFIYRQAW 893
             ++ +A+++    +IE  +  QK+  QA S + Y+D   +G K+         IY  A 
Sbjct: 656 GDVYQSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIY--AH 713

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
            +G+KT YY+ SR    V +S+LK
Sbjct: 714 RLGMKTQYYMNSR--VGVGESSLK 735


>gi|313887183|ref|ZP_07820879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923412|gb|EFR34225.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 857

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 168/707 (23%), Positives = 292/707 (41%), Gaps = 113/707 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + +    FD  Y A  L+Y   F  + L  ++   +Y L  +   I  + P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+R GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  
Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVED-- 229

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                            KE+   Y  + +     E K  R I A  LW K++   + +  
Sbjct: 230 -----------------KEYVQTYPIHSK-----EPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S P  +  +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVCNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A+R++D++ID+    I+                        K
Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K+     R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ER
Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  +A+   +L         ++E+KK     G RN   + 
Sbjct: 444 GAFDLYDTEREKDNPF----IQRVAKADPKL---------YEEMKK----FGRRNIAMLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL 815
           IAPT + + +   S  I+P +  +Y +         N+  D+T    ++F    +   + 
Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546

Query: 816 --WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W +A   D   H+ S   ++ +        ATA ++D +  ++   R Q+W+D + S+
Sbjct: 547 LTWMKANGYDPN-HNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISV 605

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917
            + L  + S + +  +Y +AW  G K  T Y   SRS   + +   K
Sbjct: 606 TINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQK 652


>gi|254468285|ref|ZP_05081691.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
 gi|207087095|gb|EDZ64378.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
          Length = 719

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 158/636 (24%), Positives = 266/636 (41%), Gaps = 70/636 (11%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCF 372
           E  Q  + RVA  LA  E   +K   E +        + +     N+G +   P  S+  
Sbjct: 45  ETIQDTYERVAEALADVEPSNKKEWKENFLWALQHGAIPAGRITSNAGAKEHKPATSTIN 104

Query: 373 LTT---VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            T    V D +  I   + E  +  K   G+G +++ +R  GA + G    + G + F+ 
Sbjct: 105 CTVSGAVQDSMTDILDKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMD 164

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + +     V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   F
Sbjct: 165 IYDRMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREDG----RLRQFNLSCLITKEF 220

Query: 490 MKRVTQNAGWTL---------------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           M+ V  ++ W L               F   E +   D   KE  I  E+  + A +   
Sbjct: 221 MEAVKSDSDWKLAFPVTEKEAKQDNLDFKDSEKTVWRDWPVKEKYIVKES-GKDAGKVAC 279

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  I A  LW  ++   ++   P     D  N  +       + ++N C E  L    
Sbjct: 280 KVYSTIKAKRLWDVIMASTYDYAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPL---- 335

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            E   C LGS+NL     N       FD+D+    +    R+LDNV++IN   + K +  
Sbjct: 336 PEYGACLLGSVNLTMFVKNPFTDDAYFDWDEYKKVVSIFTRMLDNVVEINGLPLGKQRDE 395

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-- 707
               R  G+G +G  S L ++ I Y  PE+++  +E    ++       +ELA+E+G+  
Sbjct: 396 IMQKRRHGMGYLGLGSTLTMMKIKYGDPESIKFTEEVTRILAEEGWKVGIELAKEKGSAP 455

Query: 708 -----YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGM 758
                +   +  L  +     D I +  +V  ++ M + S+     P +EL+  +   G+
Sbjct: 456 IMEELFEITEQMLQMRPEMKADGIKVGDKVAGKVLMGKYSKYMQQFP-EELRNEIAENGV 514

Query: 759 RNSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELK 811
           R S+  +IAPT TI    AN    S  I+PS+ + Y ++ +  G  T   V+ F    L 
Sbjct: 515 RFSHHSSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNVIREGKKTKEKVDVFSFELLA 572

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R L ++  +   +  D      E +PD    I ++  +      I++A+  QKWID   
Sbjct: 573 YRSLINDKAMPFSEKED------EVLPDYF--IDSSTIKTKNHVDIQAAA--QKWID--S 620

Query: 872 SLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904
           S++  ++ P+     DF  IY  A+  GLK     R
Sbjct: 621 SISKTINVPTDYDFEDFKEIYMYAYEKGLKGCTTFR 656


>gi|313111562|ref|ZP_07797361.1| NrdJa [Pseudomonas aeruginosa 39016]
 gi|310883863|gb|EFQ42457.1| NrdJa [Pseudomonas aeruginosa 39016]
          Length = 734

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 242/570 (42%), Gaps = 66/570 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 128 TIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKM 187

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 188 CFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDG----RLRQFNLSLLITDQFMQAVE 243

Query: 495 QNAGWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           Q+A W L  P      DE+ DL D   +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 244 QDADWPLVFPVHVKERDEI-DLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSV 358

Query: 606 NLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL       F +  +FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMA 765
            L  +     D       +R  +   + SR         P  EL + +   G R ++  +
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAP--ELIEALAETGARFTHHSS 536

Query: 766 IAPTATI----ANICGVSQSIDPSY-----QNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           IAPT TI    AN    S  I+PS+     +NL  +   + +   V S+ +  L  R L 
Sbjct: 537 IAPTGTISLSLAN--NASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYEL--LAYRILV 592

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLN 874
           +   + D      S     R+PD       TA  + P   ++  +  QKW D   +++ N
Sbjct: 593 NAQALPD------SDDPARRLPD----YFITADSVTPAQHVDIQAAAQKWGDSSISKTAN 642

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  D P     D IYR AW  GLK     R
Sbjct: 643 VPTDYPFEDFKD-IYRYAWHQGLKGCTTFR 671


>gi|196248885|ref|ZP_03147585.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
 gi|196211761|gb|EDY06520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
          Length = 596

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 204/457 (44%), Gaps = 59/457 (12%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V  +  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 117 FMEAVENDDEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 172

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 173 ARELWKLINICATYSAEPGIFFIDNANDMTNARAYGQKVVATNPCGEQPLAPYS----VC 228

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 229 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 287

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++    G   +
Sbjct: 288 LGVMGLADLLIYCEKEYGSEEGNQLVDELFQTIATTAYRASIELAKEKGSFPFLVGETEE 347

Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +            ++R+  +      R+P D +++ +   G+RNS+ + +APT +   + 
Sbjct: 348 E----------TRQLREAFINTGYMKRMPED-IRQDILQYGIRNSHLLTVAPTGSTGTMV 396

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  ++P +   Y +S   G F  V + +V E              L  H       E 
Sbjct: 397 GVSTGLEPYFSFAYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 437

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P+ L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++  +Y + W
Sbjct: 438 DPNHLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 495

Query: 894 LMGLK--TTYYLRSRSATSVE-KSTLKGVDGKLNAVP 927
             G K  T Y   SR A  +  K+    V+ +L  +P
Sbjct: 496 RCGAKGGTVYVDGSRDAQVLTLKAEENTVEEQLELIP 532


>gi|153808746|ref|ZP_01961414.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
 gi|149128572|gb|EDM19790.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
          Length = 796

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 156/631 (24%), Positives = 267/631 (42%), Gaps = 107/631 (16%)

Query: 339 AVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAM 392
           A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   
Sbjct: 22  AKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQ 81

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +
Sbjct: 82  LMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSV 140

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D E F+D +   G    +    N +  + D FM+   +                 
Sbjct: 141 SIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVE----------------- 179

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS- 571
             GK +   Y       D       ++I A  LW+K++   +++  P + F D     S 
Sbjct: 180 --GKPYVQQY-----PIDAANPAFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESV 232

Query: 572 PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
           P  +  + +   S+N C EI L         C L +INL ++  N       FD+D    
Sbjct: 233 PDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKK 288

Query: 624 TIRTAVRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGL 658
            +  A R++D++ID+    IE+                          KKS    R  G+
Sbjct: 289 HVALAQRIMDDIIDLELEKIERIMKKIDEDPENEEVKRAERVLWEKIYKKSGQGRRT-GV 347

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +       
Sbjct: 348 GITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNNEREQN 407

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             F    I  LAE   EL         + E+KK     G RN  C+ IAPT T + +   
Sbjct: 408 NPF----IKRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQT 450

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDG 829
           +  I+P +  +Y  +  ++ + T V+   V+E    D ++E ++   K+        +D 
Sbjct: 451 TSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDP 508

Query: 830 SIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           +    +   D+L        AT+ ++D +  ++   R QKW+D + S+ + L     + L
Sbjct: 509 ARRYTQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDL 568

Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + +Y +AW  G K     R  S + V  ST
Sbjct: 569 VNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 599


>gi|42522732|ref|NP_968112.1| ribonucleotide-diphosphate reductase alpha subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|81617878|sp|Q6MNP6|NRDJ_BDEBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|39573928|emb|CAE79105.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 764

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 142/582 (24%), Positives = 241/582 (41%), Gaps = 69/582 (11%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQ S+CF+ +V D +  IF   +  A L KY  G G++++ +R       G+ GKS G+
Sbjct: 166 RPQCSACFIQSVDDSIESIFDLAKTEAKLFKYGSGTGSNFSKIRS-KYEATGSGGKSSGL 224

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN--------------- 468
           I FL+V +  A A+  GG  R+ A    ++  H +V +F+D +                 
Sbjct: 225 ISFLEVLDKGAGAIKSGGTTRRAAKMVVVDIDHPEVLDFIDWKMREEQKAHLLIAAGLSA 284

Query: 469 --TGDDRRRTHDMNTAN--WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              G+  R     N  N   + D FMK V Q   W L +                     
Sbjct: 285 DFEGEAYRTVSGQNANNSVRVSDAFMKAVEQERPWKLKA--------------------- 323

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R   KV R+I A  +W ++    +    P I F D  N         ++HSSN 
Sbjct: 324 ------RLTGKVLREIPAGEVWNRITRAAWMCADPGIQFHDTINKWHTCPETDIIHSSNP 377

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E      S     CNL SINL+  F N+   FD++    T RT     + ++D + + 
Sbjct: 378 CSEYMFLDDS----ACNLASINLV-KFLNDTGDFDFESFIHTARTLFVAQEILVDYSSYP 432

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  +++H +R +GLG     S L    + Y S E    A      +S  A   S E+A
Sbjct: 433 TQRVAQNSHDYRPLGLGFANLGSLLMRKGVAYDSDEGRAWAGALTSLMSGVAYLTSSEMA 492

Query: 703 QERGAYSSFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           + +G ++ ++    S+         ++  +A       +++  R  W  +    +  G R
Sbjct: 493 RAKGPFAGYRKNSKSMLKVMKMHERALNQVAWKMLPAGIDKAVRNLWKGVLYNGEKYGYR 552

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWD 817
           N+    IAPT TI  +    +  I+P +  +  K  +  G+  +VN  +   L     ++
Sbjct: 553 NAQATVIAPTGTIGLLMDCDTTGIEPDFSLIKFKKLVGGGEIQIVNQSVDAALASLQYFE 612

Query: 818 EAMISDLKY---HDGSIGNIERIPDDLKKIH-ATAFE----IDPMWLIESASRRQKWIDQ 869
           +   + LKY   ++  +G  +  P+DL     ATA      + P   ++  +  Q +I  
Sbjct: 613 DERQAILKYVEENNSVVGAPQMHPEDLPVFDTATAMPGQRVLSPESHVKMMAAVQPFISG 672

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910
           A S  + +   + ++ +  IY  AW +G+K     R  S  S
Sbjct: 673 AISKTVNMPSTATEEDISRIYFLAWKLGVKAVAVYRDGSKQS 714


>gi|304315898|ref|YP_003851043.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777400|gb|ADL67959.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1143

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 155/317 (48%), Gaps = 42/317 (13%)

Query: 600 CNLGSINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           CNLGSINL  +    N ++  DYDKL  T+  AV  LDNVID N + + +  +     R 
Sbjct: 656 CNLGSINLKNMLKEENGKYEVDYDKLRDTVHNAVHFLDNVIDANKYPLPQIDEMTKGTRK 715

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MGF   L +L+IPY S EAVE AD+ M+FI   +  AS+ELA++RG +  F  S+
Sbjct: 716 IGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFIDEESKKASMELAKKRGVFKYFDKSI 775

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +                                   + K I +RN+    IAPT TI+ I
Sbjct: 776 Y-----------------------------------KDKNIKLRNATTTTIAPTGTISII 800

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G S  I+P +     ++ M     V VN        +R  + + ++  +    G++  I
Sbjct: 801 AGTSSGIEPLFAIAMTRNVMDNTQLVEVNPIFKEVALKRGFYSDELMKKIA-EQGTLKGI 859

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAW 893
           + IPDD+KK+  TA +IDP+W I   +  QK +D A S  + +  + +   +  +Y  A+
Sbjct: 860 DSIPDDVKKVFVTAHDIDPVWHIRMQAAFQKHVDNAVSKTVNFRHDATVDDVREVYELAY 919

Query: 894 LMGLKTTYYLRSRSATS 910
            +GLK     R  S  S
Sbjct: 920 RLGLKGVTIYRDGSRDS 936



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 42/297 (14%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK--------EKRAVEFYNLLSSF 349
           ++L  RY     NG  +E  +  F RVA   ++ E +K        E+   +FY+++++ 
Sbjct: 9   KVLERRYLAKDENGRVVETVEELFERVAK--SISEIDKKYDSNANIEELKNKFYDMMTNL 66

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R 
Sbjct: 67  DFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFSFSRLRP 126

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  ++  
Sbjct: 127 KGATVKSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFIQCKQ-- 184

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D     + N +  I + FMK V     + L  P                         
Sbjct: 185 --DNNEITNFNISVGITEDFMKAVESGEDYDLVDPHTK---------------------- 220

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                KV  K++A  ++  ++ M ++ G P I F D  N ++P   +G + S+N C 
Sbjct: 221 -----KVVNKLNAREVFELIVEMAWKNGEPGIVFLDRINEKNPTPAIGEIESTNPCV 272


>gi|332300423|ref|YP_004442344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177486|gb|AEE13176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 857

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 167/707 (23%), Positives = 291/707 (41%), Gaps = 113/707 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + +    FD  Y A  L+Y   F  + L  ++   +Y L  +   I  + P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+R GA+   +   H D E F+D +   G    +    N +  I D FM+ V  +  
Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDD-- 229

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                            KE+   Y  + +     E K  R I A  LW K++   + +  
Sbjct: 230 -----------------KEYVQTYPIHSK-----EPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S P  +  +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A+R++D++ID+    I+                        K
Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K+     R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ER
Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+      L+D               +D   + R ++    +L + +K  G RN   + 
Sbjct: 444 GAF-----DLYD-----------TEREKDNPFIQRVAKAD-PKLYEEMKKFGRRNIAMLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL 815
           IAPT + + +   S  I+P +  +Y +         N+  D+T    ++F    +   + 
Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546

Query: 816 --WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W +A   D   H+ S   ++ +        ATA ++D +  ++   R Q+W+D + S+
Sbjct: 547 LTWMKANGYDPN-HNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISV 605

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917
            + L  + S + +  +Y +AW  G K  T Y   SRS   + +   K
Sbjct: 606 TINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQK 652


>gi|228990453|ref|ZP_04150418.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996555|ref|ZP_04156194.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004205|ref|ZP_04162006.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757066|gb|EEM06310.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763187|gb|EEM12095.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768979|gb|EEM17577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 462

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 218/489 (44%), Gaps = 65/489 (13%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKPLDISARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           FK   N + P + +G V  SNLCTEI  L  +SE               CNLGS+N++  
Sbjct: 122 FKSNANKQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N +   + + + +     V D  +  N  T++KA    H+   +GLG M     L   
Sbjct: 182 MENKEIR-EAVHAGMEALTAVSDMTVIPNAPTVKKANDELHS---VGLGAMNLHGYLAKN 237

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-------- 721
            I Y S EA E        +++++I  S+ +A+E+G  +  F  S +  G +        
Sbjct: 238 KIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGSYFEKYETTD 297

Query: 722 --PI-DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             P+ D +  L E      +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   
Sbjct: 298 YSPVTDKVQQLFE-----GIYIPTKEDWTSLKEEVQKHGLYNSYRLAIAPTQSISYVQNA 352

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + S+ P                     +V++++ R   +      + Y          + 
Sbjct: 353 TSSVMP---------------------IVSQIESRTYANATTYYPMPY----------LS 381

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
            D    + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GL
Sbjct: 382 KDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGL 441

Query: 898 KTTYYLRSR 906
           K+ YY R+R
Sbjct: 442 KSLYYTRTR 450


>gi|333029143|ref|ZP_08457204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
 gi|332739740|gb|EGJ70222.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
          Length = 855

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 160/683 (23%), Positives = 291/683 (42%), Gaps = 114/683 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAV 340
           LKY   F+ + L  ++  ++Y +  +   I  + P     R+A  LA  E +      + 
Sbjct: 14  LKY---FSGDELAARVWVNKYAMKDSYGSIYEKSPADMHWRIANELARVEKKYPNPLTSE 70

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PDDLYG-IFGALQENAMLA 394
           E + LL  F ++    S  T   +  +   LS+CF+  V  P D YG I    +E   L 
Sbjct: 71  ELFKLLDKFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVEGPGDSYGGIIKMDEEQVQLM 130

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 131 KRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDGRR-GALMLSVSI 189

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM     + G               Y
Sbjct: 190 KHPDSEAFIDAKMTEG----KITGANVSVKIDDEFMTAAINDKG---------------Y 230

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            +++ I  E              ++I A +LW K++   +++  P + F D     S P 
Sbjct: 231 IQQYPIYSET---------PTTVKEIKAKSLWEKIVHNAWKSAEPGVLFWDTIIKESVPD 281

Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  + +   S+N C EI L         C L +INL ++  N      +F++D     +
Sbjct: 282 CYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVENPFTDKAKFNFDLFKKHV 337

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A R++D++ID+    IE                        K  K     R  G+G+ 
Sbjct: 338 ALAQRIMDDIIDLELEKIETILSKIKSDPENEEVKRTEYNLWQKIYKKTGQGRRTGVGIT 397

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L++ Y + EA + ++E  + I+  A +ASV++A+ERGA+  +         F
Sbjct: 398 AEGDMLAALNLRYGTEEATDFSEEVHKTIALAAYNASVDMAKERGAFEVYDTDREANNPF 457

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  +  ++D  +           L +++K  G RN  C+ IAPT T + +   +  
Sbjct: 458 -------INRLKDADSA----------LYEKMKKYGRRNIACLTIAPTGTTSLMTQTTSG 500

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY------------HD 828
           I+P +  +Y  +  ++ + T V    V+E    D ++E ++   K+              
Sbjct: 501 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEAKGYNPAKR 558

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
            +   I+++ ++     AT+ ++D +  ++   R QKW+D + S+ + L     ++L + 
Sbjct: 559 YTQEEIDKLVEESPYNKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVNEELVNK 618

Query: 888 IYRQAWLMGLK--TTYYLRSRSA 908
           +Y +AW  G K  T Y   SRS 
Sbjct: 619 LYVEAWKAGCKGCTVYRDGSRSG 641


>gi|329729596|gb|EGG65997.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 493

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 29/348 (8%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 317 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 370

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 371 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 425

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L
Sbjct: 426 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYL 473


>gi|253995423|ref|YP_003047487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
 gi|253982102|gb|ACT46960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
          Length = 721

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 159/636 (25%), Positives = 277/636 (43%), Gaps = 76/636 (11%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGT-RHPQLSSCFLTT 375
           A ++RVA  LA  ET +EKRA      L +     + +     N+G   H   +S    T
Sbjct: 49  ASYLRVARALADVETTEEKRAEWHEKFLWALRRGAIPAGRITSNAGALEHKPATSTINCT 108

Query: 376 VP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           V     D +  I G + E  +  K   G+G +++ +R  GA + G    + G + F+ + 
Sbjct: 109 VSGVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIY 168

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +     V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   FM+
Sbjct: 169 DKMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKRENG----RLRQFNLSCLITKEFME 224

Query: 492 RVTQNAGWTLFSPD----------EVSDLHDLYGKEFEIA--YENYERQADRGEI--KVF 537
            V  +A W L  P            V+D   +  +E+ I   Y       D G++  +V+
Sbjct: 225 AVKADAEWKLAFPVTEKESIIDNLNVNDESQVVWREWPIKGKYLTKTDGVDAGKVACRVY 284

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + I A  LW  +++  ++   P     D  N  +       + ++N C E  L       
Sbjct: 285 KTIKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP----Y 340

Query: 598 AVCNLGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             C LGS+NL       F +   FD+ +    +    R+LDNV++IN   +++ +     
Sbjct: 341 GACLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQQQRDEIMR 400

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA----- 707
            R  G+G +G  S+L ++ + Y   ++++  +E    ++    S  V+LA+E+GA     
Sbjct: 401 KRRHGMGYLGLGSSLTMMKMKYGEEDSIKFTEEVTRVMAEEGWSVGVQLAEEKGAAPIMD 460

Query: 708 --YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNS 761
             +      L  +     D I +  ++  ++ + + SR     P + L+ ++ T G+R +
Sbjct: 461 EKFEITADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFP-EGLRNQIATKGVRFT 519

Query: 762 NCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRD 814
           +  +IAPT TI    AN    S  I+PS+ + Y ++ +         V+ F    L  R+
Sbjct: 520 HHSSIAPTGTISLSLAN--NASNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRE 577

Query: 815 LWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           L +    + + + D      E++PD   D   I A A  +D    I++AS  QKWID   
Sbjct: 578 LINP---NAMPFSDKP---EEQLPDYFLDSSTIMAKA-HVD----IQAAS--QKWID--S 622

Query: 872 SLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904
           S++  ++ P+     DF  IY  A+  GLK     R
Sbjct: 623 SISKTINVPTDYDFEDFKNIYLYAYDKGLKGCTTFR 658


>gi|332877996|ref|ZP_08445726.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683958|gb|EGJ56825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 845

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 157/652 (24%), Positives = 266/652 (40%), Gaps = 109/652 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371
           P+    R+A  +A  E + E   +A E + LL  F ++    + +   G  H    LS+C
Sbjct: 47  PEDMHWRIANEIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNC 106

Query: 372 FLTTV---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D   GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF+
Sbjct: 107 FVIGLDGQADSYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 166

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  I D 
Sbjct: 167 ERYSNSTREVAQDGRR-GALMLSVSIKHPDAEAFIDAKMTEG----KVTGANVSVKIDDE 221

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM    +   +T   P                         D     V + ISA  LW+K
Sbjct: 222 FMHAAIEGQSYTQQYP------------------------IDSSSPMVAKNISAQDLWKK 257

Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604
           ++   +++  P + F D     S P  +  +     S+N C EI L         C L +
Sbjct: 258 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 313

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC------------------- 640
           INL A+  N       FD+D     ++ A R++D++ID+                     
Sbjct: 314 INLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKIDADPESEEV 373

Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                H  EK  K +   R  G+G+      L  L + Y + EA + A E  + ++  A 
Sbjct: 374 KGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAY 433

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV++A+ERGA+  F         F    I  L E   EL  N                
Sbjct: 434 RSSVQMAKERGAFEIFDAEREKNNPF----INRLREADPELYENMVK------------- 476

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814
            G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   ++E    D
Sbjct: 477 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETG--D 534

Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862
            ++E ++   K+        +D      +   D+L        ATA ++D +  ++    
Sbjct: 535 AFEEYIVYHHKFLTWMKINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGA 594

Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSV 911
            QKW+D + S+ + L     ++L + +Y +AW  G K  T Y   SRS   +
Sbjct: 595 IQKWVDHSISVTVNLPNNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMI 646


>gi|282916073|ref|ZP_06323836.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320021|gb|EFB50368.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
          Length = 493

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 29/348 (8%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 154 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 213

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 214 GGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFH 273

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V + + +   
Sbjct: 274 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLD 333

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET----GHPWITFKDPCNIRSP 572
           + ++  + Y+       ++  +K +     R+ML ++ +T    G+P++ FKD  N   P
Sbjct: 334 DIDLE-KYYDDMVANPNVEKKKKNA-----REMLNLIAQTQLQSGYPYLMFKDNANRVHP 387

Query: 573 QQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDK 620
             ++G +  SNLCTEI        +N    E  +     CNLGS+N++     N  +  K
Sbjct: 388 NSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIV-----NVMESGK 442

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
              ++ + +  L  V D+ N       +K+N    ++GLG+M     L
Sbjct: 443 FRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYL 490


>gi|157310980|ref|YP_001468976.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832128|gb|ABF57528.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 865

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 22/344 (6%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLV--YLANDLK------YERDFAFE-YLGLQILYDRYF 306
           F   +EE V        + D D+V  Y   DLK      Y   F F+ Y+G    Y+ Y 
Sbjct: 45  FFHSLEEKVDHLTEEVQLWDKDVVLRYGFEDLKRLMKQAYGHKFRFKTYMGALKFYNSYA 104

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           L  N  +    + +  RV +  A+  +E  + A    +L+    F  +TPT  N+G    
Sbjct: 105 LKTNDGK-RYYERYEDRVVL-TAIHYSEDFEHAESLVDLIIKGIFQPATPTFLNAGLLDA 162

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +  SCF+  V D +  I   +Q++  L+K  GG+G  ++ +R  GA I G  G++ GVI
Sbjct: 163 GKPVSCFILDVQDTMGSIGRIVQDSLQLSKRGGGVGIGFSNLREAGAPIKGREGQASGVI 222

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +
Sbjct: 223 PVMKILEDSFSYSNQLGARQGAGAVYLNAHHPDILAFLDTKRENADEKIRIKTLSLGVIV 282

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEI-KVFRKIS 541
           PD+  +   ++    LFSP    D++ +YGK   EF +  E Y+       I K F  I 
Sbjct: 283 PDVTFRLAKESEPMALFSP---YDINKVYGKSLSEFSVT-EMYDTWLKDDRIAKTF--ID 336

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           A  L++ +  + FE+G+P++ F D  N  +P  ++G + SSNLC
Sbjct: 337 ARKLFQTIAEVQFESGYPYLMFDDAANRGNPAPNIGRIKSSNLC 380



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 142/331 (42%), Gaps = 49/331 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+    A    D D   + ++ A + L+ V +     +     + N   RAIGL
Sbjct: 566 CNLGSLNVARLSA---LDTDDFHTAVKDAYKFLNQVAVQTEIGSSPTVVRGNRESRAIGL 622

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW- 716
           G M    AL  L + Y S EA +  +  M  ++F  ISASV+ A+E G+ +   +GS W 
Sbjct: 623 GQMNLHGALIELGLDYNSQEARDWFEWYMMRVTFSVISASVDKAEEMGSGFKGAEGSRWG 682

Query: 717 -------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                  D+ +  ID I       +   +  +    W  L +R +  G+ N N  AI PT
Sbjct: 683 DIISGHRDRAMALIDRITASGNAMENSDVAWS--YEWLRLLERFRLHGIYNQNLQAIPPT 740

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + V K    G        + NE                   
Sbjct: 741 GSISYINHATASIHPVTSPVEVRKEGKLGRVYYPQYGVTNE------------------- 781

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
               N+E I         +A+ I P  +I+  +    W+DQ  SL L+  D  + + ++ 
Sbjct: 782 ----NVESID--------SAYAIGPNPIIDMYAVASPWVDQGMSLTLFFPDTATTRDINR 829

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               A   GLK+ YY+R+ SA SVE + ++G
Sbjct: 830 AQIYAHKKGLKSLYYIRT-SAKSVEGTEVEG 859


>gi|224536055|ref|ZP_03676594.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522328|gb|EEF91433.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 845

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 161/688 (23%), Positives = 293/688 (42%), Gaps = 111/688 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                      +  E  V ++I+A  LW+K++   +++  P + F D     S P  +  
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD++     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+          ++   HT R +              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMEKIDADPESEDVKHTERILWDKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   +L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPQL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSI----G 832
           +  +Y  +  ++ + T V+   V+E    D ++E ++   K+        H+ S      
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHPKFVTWMEAQGHNPSKRYTQE 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
            I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +
Sbjct: 565 EIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLK 917
           AW  G K  T Y   SRS   +   + K
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDK 652


>gi|34540859|ref|NP_905338.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
 gi|34397173|gb|AAQ66237.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
          Length = 850

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 154/628 (24%), Positives = 264/628 (42%), Gaps = 111/628 (17%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394
           E ++L   F ++    S  T   +  +   LS+CF+  +  D   YG I    +E   L 
Sbjct: 73  ELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDADSYGAIIRIDEEQVQLM 132

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM+ V +                   
Sbjct: 192 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVE------------------- 228

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
           GK ++  Y       D  E K  ++I A  LW K++   +++  P + F D     S P 
Sbjct: 229 GKPYKQQY-----PIDAKEPKWEKEIDARTLWGKIIHNAWKSAEPGVLFWDTIIRESVPD 283

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  +     S+N C EI L         C L +INL ++  N       FD++   + +
Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVKNPFTSEASFDFELFRNHV 339

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A R++D++ID+    IE                        K ++     R  G+G+ 
Sbjct: 340 VLAQRIMDDIIDLEAEKIEQILSKIASDPESEEVKTSERNLWHKIRRKTLAGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+  F     +   F
Sbjct: 400 AEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKREENNPF 459

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  +A +R+          PW  L + +K  G RN  C+ IAPT + + +   S  
Sbjct: 460 -------IARIREAD--------PW--LYEEMKQYGRRNIACLTIAPTGSTSLMTQTSSG 502

Query: 782 IDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--W--DEAMISDLKYH 827
           I+P +  +Y +         N+  D+   V +SF    +   +   W        D KY 
Sbjct: 503 IEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWMRTNGYDPDRKYT 562

Query: 828 DGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
           +  I + + R P       ATA ++D +  ++   R Q+W+D + S+ + L     ++L 
Sbjct: 563 NEEIDDLVARSP----YYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDVTEELV 618

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSV 911
           + +Y +AW  G K  T Y   SRS   +
Sbjct: 619 NTLYVEAWKSGCKGCTVYRDGSRSGVLI 646


>gi|188995090|ref|YP_001929342.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
 gi|188594770|dbj|BAG33745.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
          Length = 850

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 154/628 (24%), Positives = 264/628 (42%), Gaps = 111/628 (17%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394
           E ++L   F ++    S  T   +  +   LS+CF+  +  D   YG I    +E   L 
Sbjct: 73  ELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDADSYGAIIRIDEEQVQLM 132

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM+ V +                   
Sbjct: 192 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVE------------------- 228

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
           GK ++  Y       D  E K  ++I A  LW K++   +++  P + F D     S P 
Sbjct: 229 GKPYKQQY-----PIDAKEPKWEKEIDARTLWGKIIHNAWKSAEPGVLFWDTIIRESVPD 283

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  +     S+N C EI L         C L +INL ++  N       FD++   + +
Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVKNPFTSEASFDFELFRNHV 339

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A R++D++ID+    IE                        K ++     R  G+G+ 
Sbjct: 340 VLAQRIMDDIIDLEAEKIEQILSKIDSDPESEEVKTSERNLWHKIRRKTLAGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+  F     +   F
Sbjct: 400 AEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKREENNPF 459

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  +A +R+          PW  L + +K  G RN  C+ IAPT + + +   S  
Sbjct: 460 -------IARIREAD--------PW--LYEEMKQYGRRNIACLTIAPTGSTSLMTQTSSG 502

Query: 782 IDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--W--DEAMISDLKYH 827
           I+P +  +Y +         N+  D+   V +SF    +   +   W        D KY 
Sbjct: 503 IEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWMRTNGYDPDRKYT 562

Query: 828 DGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
           +  I + + R P       ATA ++D +  ++   R Q+W+D + S+ + L     ++L 
Sbjct: 563 NEEIDDLVARSP----YYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDVTEELV 618

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSV 911
           + +Y +AW  G K  T Y   SRS   +
Sbjct: 619 NTLYVEAWKSGCKGCTVYRDGSRSGVLI 646


>gi|319767468|ref|YP_004132969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
 gi|317112334|gb|ADU94826.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
          Length = 596

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 202/452 (44%), Gaps = 61/452 (13%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V ++  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 117 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 172

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 173 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 228

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 229 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 287

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G++    G   +
Sbjct: 288 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVGETEE 347

Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +            ++R+  +      R+P D +++ +   G+RNS+ + +APT +   + 
Sbjct: 348 E----------TRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 396

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  ++P +   Y +S   G F  V + +V E              L  H       E 
Sbjct: 397 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 437

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P+ L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++  +Y + W
Sbjct: 438 DPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 495

Query: 894 LMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
             G K  T Y   SR A  +   TLK  + ++
Sbjct: 496 RCGAKGGTVYVDGSRDAQVL---TLKAEENRI 524


>gi|205374047|ref|ZP_03226847.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           coahuilensis m4-4]
          Length = 849

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 206/458 (44%), Gaps = 61/458 (13%)

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQADRGE----- 533
           N +  + D FMK V ++  + L  PD  S     Y +E    Y EN+ +  D  E     
Sbjct: 370 NISVCLTDDFMKAVEEDRDYELRFPDVES-----YNEEQMKYYNENWHQVGDVREWEKQG 424

Query: 534 --IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITL 590
             ++ +R I A  LW  +      +  P I F D  N ++     G  V ++N C E  L
Sbjct: 425 YAVRTYRTIRAKELWNLINICATYSAEPGIFFIDNANDKTNATAYGQKVVATNPCGEQPL 484

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
              S    VCNL +INL A FAN +    D++KL  T+   VR+ DNVID   + +E  K
Sbjct: 485 APYS----VCNLAAINL-AEFANKESKTVDFEKLKQTVAIGVRMQDNVIDATPYFLEDNK 539

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R +GLG+MG    L      Y S E  ++ D+  E I+  A   S++LA+E+G+
Sbjct: 540 KQALGERRVGLGVMGLADLLIYCEKEYGSEEGNQLVDQVFEVIATTAYRESIDLAKEKGS 599

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +   +GS  ++          L +   E    +   +P D +++ + T G+RNS+ + +A
Sbjct: 600 FPFLEGSTEEE-------TNRLRQAFTETGYMKG--MPED-IREDILTYGIRNSHLLTVA 649

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P +   Y +S   G F  V + +V E              L +H
Sbjct: 650 PTGSTGTMVGVSTGLEPYFSFTYYRSGRLGKFIEVKADIVQEY-------------LDHH 696

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KK 884
                  +  P  L    ATA  + P    +     Q+WID   S++  ++ P G   ++
Sbjct: 697 P------DADPHALPHWFATAMSLKPEAHADVQCVIQRWID--SSISKTVNAPKGYTVEQ 748

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVD 920
           ++ +Y + +  G K  T Y   SR A  +   TLK  D
Sbjct: 749 VEKVYERLYKGGAKGGTVYVDGSRDAQVL---TLKAED 783



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSG--TRHPQLSSCFLTTVP 377
           R A GLA  E  +E R     +FYN L    F+ +   L+ +G  T     +   +  V 
Sbjct: 137 RNATGLASAEKTEELRQEWFQKFYNELVHLRFVPAGRVLYGAGAGTDVTYFNCYVMPFVQ 196

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 197 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSSGSVSWLDDIAKLTHL 256

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 257 VEQGGSRRGAQMIMLSDWHPDIVEFI 282


>gi|260888488|ref|ZP_05899751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|330838203|ref|YP_004412783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|260861685|gb|EEX76185.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|329745967|gb|AEB99323.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
          Length = 749

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 138/525 (26%), Positives = 229/525 (43%), Gaps = 79/525 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +G  IL  +Y+ H   +    P  F  RVA G+   E  ++ RA      LS      + 
Sbjct: 9   IGRSILQAKYY-HAGETE---PHEFIERVA-GIFSPEVREKMRAYLEDGALSP-----AG 58

Query: 356 PTLFNSGTR---HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            TL+ +G +      LS+C++   P DD+  IF   Q+ A +  Y GG+G + + +R   
Sbjct: 59  RTLYAAGAKGKFKSSLSNCYIMPSPTDDIESIFTVNQQIAKIFSYGGGIGVNISGLRPKD 118

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + ++     S G + FLK+ N T   ++Q G R+GA+   L++ H D+ EFL +++    
Sbjct: 119 SRVNNVARSSTGAVSFLKIFNTTGEVISQNG-RRGAMLVALDSEHPDIYEFLHMKQ---- 173

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  +   MN +    D FM+ V  +A                   E+E+ ++        
Sbjct: 174 ENEKLASMNLSILFSDAFMQAVIDDA-------------------EYELTFD----VEAT 210

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEIT 589
           GE K+ R I A   + +     ++ G P   FKD  N  +         +  +N C E  
Sbjct: 211 GE-KIRRTIRAAEFFDEYCQTQWDWGDPGALFKDRLNDYTLLSGYDEYKIEVTNPCGEFG 269

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLA-----STIRTAVRVLDNVIDINCHT-- 642
            N+ +     CNL S+NL +   +   D   +A     + I+TAVR LD V+D    T  
Sbjct: 270 GNAYNS----CNLMSLNLYSFIEDKFGDAPHIAEEEFRAAIQTAVRALDEVLDYGFDTQP 325

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+ ++     R++GLGL G   A   + + Y S E+ +     +  +   A   S  LA
Sbjct: 326 LEENRQCIRDWRSVGLGLFGVADAFVAMKLAYGSRESCDFIQGVLRTMFTEAARTSAALA 385

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA+  +    W++              +  L        P  E+   +K  G+RN  
Sbjct: 386 KEKGAFGKYD---WEK------------TKKSPLIQRLAEEAP--EVYAEIKEYGLRNGT 428

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-----SGDFTV 801
            ++IAPT TI+ + GV S   +P YQ  Y ++       SG F V
Sbjct: 429 LLSIAPTGTISLLMGVFSGGCEPLYQISYERTTHKMEEGSGSFRV 473


>gi|56420954|ref|YP_148272.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56380796|dbj|BAD76704.1| ribonucleoside-diphosphate reductase (major subunit) [Geobacillus
           kaustophilus HTA426]
          Length = 857

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 195/437 (44%), Gaps = 58/437 (13%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V ++  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 378 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 433

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 434 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 489

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 490 NLAAINL-ANMVDKERKVIDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 548

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G++    G   +
Sbjct: 549 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVGETEE 608

Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +            ++R+  +      R+P D +++ +   G+RNS+ + +APT +   + 
Sbjct: 609 E----------TRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 657

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  ++P +   Y +S   G F  V + +V E              L  H       E 
Sbjct: 658 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 698

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P+ L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++  +Y + W
Sbjct: 699 DPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 756

Query: 894 LMGLK--TTYYLRSRSA 908
             G K  T Y   SR A
Sbjct: 757 RCGAKGGTVYVDGSRDA 773



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FY  L+S +F+ +   L+ +G+ +     +C++   V 
Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 256 VEQGGSRRGAQMIMLADWHPDIIEFI 281


>gi|297529413|ref|YP_003670688.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
 gi|297252665|gb|ADI26111.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
          Length = 857

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 202/459 (44%), Gaps = 75/459 (16%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V ++  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 378 FMEAVEKDEEYALRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 433

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 434 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 489

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 490 NLAAINL-ANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 548

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G+          
Sbjct: 549 LGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGS---------- 598

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTS--------RLPWDELKKRVKTIGMRNSNCMAIAPT 769
              FP     L+ E  +E    R +        R+P D +++ +   G+RNS+ + +APT
Sbjct: 599 ---FPF----LVGETEEETRKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPT 650

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  V + +V E              L  H  
Sbjct: 651 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP- 696

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886
                E  P+ L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++ 
Sbjct: 697 -----EADPNHLPPWFVTAMDLPPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQ 749

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
            +Y + W  G K  T Y   SR A  +   TLK  + ++
Sbjct: 750 KVYERLWRCGAKGGTVYVDGSRDAQVL---TLKAEENRI 785



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FY  L+S +F+ +   L+ +G+ +     +C++   V 
Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 256 VEQGGSRRGAQMIMLADWHPDIIEFI 281


>gi|295399141|ref|ZP_06809123.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978607|gb|EFG54203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 591

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 197/437 (45%), Gaps = 58/437 (13%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V ++  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 112 FMEAVEKDEEYELRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 167

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 168 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 223

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 224 NLAAINL-ANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 282

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++    G   +
Sbjct: 283 LGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLVGKTEE 342

Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +            ++R+  +      R+P D +++ +   G+RNS+ + +APT +   + 
Sbjct: 343 E----------TQKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 391

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  ++P +   Y +S   G F  V + +V E              L  H       E 
Sbjct: 392 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 432

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P++L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++  +Y + W
Sbjct: 433 DPNNLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 490

Query: 894 LMGLK--TTYYLRSRSA 908
             G K  T Y   SR A
Sbjct: 491 RGGAKGGTVYVDGSRDA 507


>gi|327198491|ref|YP_004327079.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
 gi|311875187|emb|CBX44447.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
          Length = 744

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 189/801 (23%), Positives = 327/801 (40%), Gaps = 108/801 (13%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DGT+  F+  RL    E A +   D +   V  +  K  +DG + SDL+ A+I      I
Sbjct: 9   DGTVQPFDPSRLNRWAEWAANYGVDWAEIAV--DAVKRCHDGCTTSDLQWAMI---EACI 63

Query: 211 EKEPN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +++   +A +  R L+  + +E      K P     ++                 K R L
Sbjct: 64  DRQTQAHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYD-----------------KMRTL 106

Query: 270 H--ESM--MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMR 323
           +  E M   D +L YL   + + +D  + Y  ++   D+Y +   +     E PQ  FM 
Sbjct: 107 NLWEDMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +A+ + ++   K++R    ++ Y  LS       TP L    ++    +SC +    D  
Sbjct: 167 MALAV-MQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTA 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A      +     G+G      R  G  +       QG  P+    N TAV  N+
Sbjct: 226 ESIGIAEHIAYTMTCKQAGIG-ILLQTRSKGDGVRNKTIVHQGKTPYFACIN-TAVKANK 283

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R G+          ++++ L L       +++   M+    I + F++RV ++  W 
Sbjct: 284 QQTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWM 343

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L S  +  +LH      +E+    Y+R      IK  + +SA  L +  L   +ETG  +
Sbjct: 344 LVSFKDAPELHKRMYGSYELFEVEYDRVMRNPGIKK-KMVSARKLSKVFLKNRYETGRVY 402

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------EETAVCNLGSI 605
             F D  N  +P +    + +SNLC EI L + +                E A+C L SI
Sbjct: 403 PFFTDNMNTHTPFEDT--IWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSI 460

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
             +A     + +Y+++A      + ++DNV+DI  +  E  KKS    R++G+G+     
Sbjct: 461 --VAGRVKPE-EYEEVAYY---TLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAH 514

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L      Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P++ 
Sbjct: 515 YLASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLED 574

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDP 784
                EV +   ++ T +  W +L K +K   G+R+S   A  P  + +     +  + P
Sbjct: 575 YS--QEVDN--IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYP 630

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                 V ELK             K   GS+  +    + +  +
Sbjct: 631 ----------------------VRELKMFK----------KSPQGSVFFLAPDSEVIGDV 658

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL-------DFIYRQAWLMG 896
           + +A+++    +IE  +  QK+  QA S + Y+D   +G K+         IY  A  +G
Sbjct: 659 YQSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIY--AHRLG 716

Query: 897 LKTTYYLRSRSATSVEKSTLK 917
           +KT YY+ SR    V +S+LK
Sbjct: 717 MKTQYYMNSR--VGVGESSLK 735


>gi|312110256|ref|YP_003988572.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
 gi|311215357|gb|ADP73961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
          Length = 591

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 197/437 (45%), Gaps = 58/437 (13%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM+ V ++  + L  PD    +     +E  I  E +    D  E       ++V+RKI 
Sbjct: 112 FMEAVEKDEEYELRFPD----VETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIR 167

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L   S    VC
Sbjct: 168 ARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPYS----VC 223

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL +INL A+  + +    DY+KL  T+   VR+ DNVID   + +E+ KK     R IG
Sbjct: 224 NLAAINL-ANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIG 282

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++    G   +
Sbjct: 283 LGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLVGKTEE 342

Query: 718 QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +            ++R+  +      R+P D +++ +   G+RNS+ + +APT +   + 
Sbjct: 343 E----------TQKLREAFINTGYMKRMPED-IRQDILKYGIRNSHLLTVAPTGSTGTMV 391

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  ++P +   Y +S   G F  V + +V E              L  H       E 
Sbjct: 392 GVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEY-------------LDKHP------EA 432

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
            P++L     TA ++ P    +     Q+W+D   SL+  ++ P G   +++  +Y + W
Sbjct: 433 DPNNLPHWFVTAMDLSPEAHADVQCIIQRWVD--SSLSKTVNAPKGYTVEQVQKVYERLW 490

Query: 894 LMGLK--TTYYLRSRSA 908
             G K  T Y   SR A
Sbjct: 491 RGGAKGGTVYVDGSRDA 507


>gi|298383753|ref|ZP_06993314.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
 gi|298263357|gb|EFI06220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
          Length = 845

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 164/685 (23%), Positives = 287/685 (41%), Gaps = 111/685 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTAKELYD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P E ++         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYIQQYPIESANP-------- 243

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                              ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 244 ----------------TTTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD++     +  A 
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFKKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQ 664
           R++D++ID+    IE+                          KKS    R  G+G+    
Sbjct: 344 RIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRT-GVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQNNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  LAE   EL         + E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -IQRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIGNI 834
            +  +Y  +  ++ + T V+   V+E    D ++E ++   K         Y      + 
Sbjct: 506 VFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYSQ 563

Query: 835 ERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890
           E I + + K     AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y 
Sbjct: 564 EEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYV 623

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
           +AW  G K     R  S + V  ST
Sbjct: 624 EAWKSGCKGCTVYRDGSRSGVLIST 648


>gi|62327200|ref|YP_223938.1| ribonucleotide reductase [Phage phiJL001]
 gi|50059518|gb|AAT69490.1| ribonucleotide reductase [Phage phiJL001]
          Length = 602

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 217/485 (44%), Gaps = 79/485 (16%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT-TVPDDLYGIFGA 386
           ALK+ E+  +  E   +L    FM +       G T++    +C+++ T+ D      G+
Sbjct: 57  ALKDGEEHYK--ELREILLDMRFMPAGRVQAAMGSTKNVTAYNCYVSGTIEDSFIDGHGS 114

Query: 387 LQENAMLA----KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           + E A  A    +  GG+G D++ +R  GA I     +S G + F+++ +     V   G
Sbjct: 115 IMERAKQAAATMRMGGGIGYDFSTLRPNGALIKKLQSRSSGPLSFMQIYDSVCKCVASSG 174

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    L   H D+EEF+  + N  +        NT+  I D FM+ V         
Sbjct: 175 HRRGAQMGVLRVDHPDIEEFIRAKHNEDN----LTGFNTSIAITDRFMECV--------- 221

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                     + G+ F + +            + +R I+A  LW  ++   ++   P   
Sbjct: 222 ----------ISGEPFPLTFGG----------ETYRSINAENLWEMIMRSTWDWAEPGTL 261

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----------- 611
           F D  N  +  ++   + ++N C E  L         C LGS NL+ +            
Sbjct: 262 FIDQINRMNNLKYCETIAATNPCGEQPL----PPYGACLLGSFNLVKYVKPFTGRVFVVG 317

Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           A+++  FD+D  A+ +   VR +DNV+D   + + + +K   + R +GLG+    +A   
Sbjct: 318 ADSRWTFDWDLFATDVYAVVRAMDNVVDRAIYPLFEQEKEAKSKRRMGLGVTALANAAEA 377

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +PY S E ++   + +E ++ ++  ASVELAQE+GA+      L+D+     + +  +
Sbjct: 378 LGMPYGSIEFLKFEGQVLETLACNSYQASVELAQEKGAF-----PLYDERYLDSEYVRQV 432

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788
                         LP +EL++ +   G+RNS+  +IAPT TI+     VS  I+P +  
Sbjct: 433 --------------LP-EELQEDIGRYGIRNSHLTSIAPTGTISLTADNVSSGIEPVFSY 477

Query: 789 LYVKS 793
            Y ++
Sbjct: 478 GYDRT 482


>gi|298244257|ref|ZP_06968063.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
 gi|297551738|gb|EFH85603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
          Length = 1225

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 201/471 (42%), Gaps = 85/471 (18%)

Query: 444  RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
            R+GA+   L+  H D+EEF+ ++K  G         N +  + D FM+ V  +A W L  
Sbjct: 617  RRGALMLMLDDNHPDIEEFITVKKKAG----MIEHANLSVCVSDAFMQAVKDDADWNLVW 672

Query: 504  PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                                       +GE+K  + + A  LW  + T  +E+  P + F
Sbjct: 673  ---------------------------QGEVK--KTLKARHLWDLICTSAWESAEPGVVF 703

Query: 564  KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
             D  N  S   +   +   N C E  L   +    VCNLG++N+ A  ++   D+ +LA 
Sbjct: 704  MDRYNKESNTWYYETIRCVNPCGEQGLGPWN----VCNLGALNVAAFVSDGAMDWQRLAE 759

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
              + ++R LDNVID   +  ++ +++    R  GLG MG   AL  + I Y S  ++ + 
Sbjct: 760  ISKVSMRFLDNVIDATDYFFDENREAQLGTRRTGLGTMGLADALIKMKIAYGSEASIPVI 819

Query: 684  DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            +     I   A  AS E+A E+G +  F+   + QG F                     R
Sbjct: 820  ERIYSTIRDSAYEASTEIAAEKGPFPRFERDKYLQGKF-------------------IKR 860

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
            LP   L++++K  G RN+  +  APT T + + GVS  I+P +    ++ + +G+  + +
Sbjct: 861  LP-KSLQEKIKKHGTRNAVLLTQAPTGTTSLLSGVSSGIEPVFDFAMIRRDRTGEHILYH 919

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              L         W +A  +    H   + + +  P++  ++ AT                
Sbjct: 920  PLL-------QAWRDAHPNASTPHY-FVSSKDLSPEEHIRVQATV--------------- 956

Query: 864  QKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSATSV 911
            Q++ D   S++  ++ P+   +D +   YR A+ MG K   Y R  S  +V
Sbjct: 957  QRYTD--ASISKTVNAPNNHTVDQVETLYRLAYEMGCKGVTYYRDGSRDAV 1005



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAV---EFYNLLS 347
            E +  ++  DRY L    G  +E  P+  + RVA G+A  E  +EK+A     FY+ LS
Sbjct: 29  LEGIRQKVFMDRYSLKDATGQPLEFYPEDMWKRVARGIAAVEQGEEKQAFWEERFYDALS 88

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWT 405
           +F F+     L  +GT H     +CF+   P+D   GI   L+    +    GG+G + +
Sbjct: 89  NFQFVPGGRILAGAGTGHQVTFYNCFVVPSPEDSRQGILENLKVMTEIMARGGGVGINLS 148

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVAN-DTAVAVNQGG 442
            +R  G++I   NG + G   + ++ +  T   + QGG
Sbjct: 149 TLRPRGSYIKTVNGTASGPCSWAQLYSVATGDVIQQGG 186


>gi|326802953|ref|YP_004320771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650728|gb|AEA00911.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 860

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 197/439 (44%), Gaps = 62/439 (14%)

Query: 489 FMKRVTQNAGWTL-FSPDEVSDLHDL--YGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           FM+ V +   W+L F   E  D  ++  Y  +++   +  E +A   EI  +R + A  L
Sbjct: 375 FMEAVKEGKDWSLRFPAVEKYDQEEMAAYDSQWQEIGDVREWEAMGHEITTYRTLPAQEL 434

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGS 604
           W+ +         P I F D  N  +     G  V ++N C E  L   S    VCNLG+
Sbjct: 435 WQLINICATYAAEPGIFFIDRANEDTNAVAYGQKVVATNPCGEQPLAPYS----VCNLGA 490

Query: 605 INL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           INL  +A   N + D  KL  T+ TA+R+ DNVID   + +E  KK     R IGLG+MG
Sbjct: 491 INLAQMADKENKRLDKKKLQKTVATAIRMQDNVIDATPYFLEANKKQALGERRIGLGVMG 550

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L      Y S E  ++ DE  E I+  A   S+ELA+ERG+             FP
Sbjct: 551 LADLLIYCEKRYGSKEGNQLVDEVFETIAVTAYQTSIELAKERGS-------------FP 597

Query: 723 IDSIGLLAEVRDELAMNR--------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                L+ E  +E    R          R+P + +++ V   G+RNS+ + +APT +   
Sbjct: 598 F----LIGETDEETQALRERFVQSGFMQRMP-ESIRQDVLKYGIRNSHLLTVAPTGSTGT 652

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +  VS  ++P +   Y ++   G F  VN+ +V E              L  H  +  ++
Sbjct: 653 MMNVSTGLEPYFAFKYYRTGRLGKFIEVNADIVQEY-------------LDQHPEA--DV 697

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
           + +PD       +A ++ P   ++  +  Q+W+D   S++  ++ P G    ++  +Y +
Sbjct: 698 DNLPD----FFVSAMDLSPREHVDVQTTIQRWVD--SSISKTVNAPKGYAVNQVAEVYEK 751

Query: 892 AWLMGLK--TTYYLRSRSA 908
            +  G K  T Y   SR +
Sbjct: 752 LYEGGAKGGTVYVDGSRDS 770



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 323 RVAMGLA-LKETEKEKRAVE--FYNLLSSFHFMCSTPTLFN--SGTRHPQLSSCFLTTVP 377
           R A GLA + + E  ++ +E  FY   S  +F+ +   L+   SGT     +   +  VP
Sbjct: 134 RNAHGLAAIDKNEDRRQEIEAAFYQEESKGNFVPAGRVLYGAGSGTDVTYFNCYVMPYVP 193

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    +E   +    GG+G + + +R   + + G NGKS G + +L         
Sbjct: 194 DSRGGIADHRKEVMEIMSRGGGVGTNGSTLRPRHSLVRGVNGKSSGAVSWLDDIAKLTHL 253

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 254 VEQGGSRRGAQMIMLADWHPDILEFI 279


>gi|212691080|ref|ZP_03299208.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
 gi|212666312|gb|EEB26884.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
          Length = 848

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 166/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399
             F ++    S  T   +  +   LS+CF+  + D     +GA+    +E   L K  GG
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D 
Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E F+D +   G    +    N +  + D FM+       +    P  V     ++ KE  
Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
                               I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + +A E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E +I   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIIFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664


>gi|117620070|ref|YP_855408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561477|gb|ABK38425.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 715

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 154/627 (24%), Positives = 262/627 (41%), Gaps = 62/627 (9%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TVPD 378
           RVA+ LA +E++ +     F   L +        T       H   +S   C ++ T+ D
Sbjct: 51  RVALALAGQESQPDVWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIED 110

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  I G + E  +  K   G+G D++ +R  GA + G    + G + F+ + +     V
Sbjct: 111 SMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTV 170

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +  G R+GA    ++  H DV EF+  ++  G    R    N +  I + F+K V ++A 
Sbjct: 171 SSAGGRRGAQMGTMDIRHPDVVEFIQAKREDG----RLRQFNLSLLITEEFVKAVKEDAP 226

Query: 499 WTLFSPDEVSDLH------DLYGKEFEIAYENYERQA--DRGEI--KVFRKISAVALWRK 548
           W L  P    ++       D   + F   + N E     + G++  KV++ + A  LW  
Sbjct: 227 WQLIFPYTAREVEQDGITLDDPTQVFWADWPNREGVVFNELGQVACKVYKTLPARKLWNV 286

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++T  ++   P     D  N  +       + ++N C E  L         C LGS+NL 
Sbjct: 287 IMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVNLT 342

Query: 609 AH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                 FA    FD+      +    R+LDNV++IN   + + ++   + R  G+G +G 
Sbjct: 343 RFVRDPFAEQAAFDWSAFRKVVAIFTRMLDNVVEINQLPLARQREEIISKRRHGMGFLGL 402

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF-- 721
            SAL +L I Y S  AV   ++  + ++      S+ LA+E+G     +      G    
Sbjct: 403 GSALTMLRIKYGSAAAVAFTEQVSQELAMTGWRESLALAKEKGPAPIMEQEFEVTGKLLR 462

Query: 722 -----PIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTA 770
                  D I L  +V+ ++   R SR           L   +  +G R ++  +IAPT 
Sbjct: 463 LRPEMAADGIKLGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTG 522

Query: 771 TI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISD 823
           TI    AN    S  I+PS+ + Y ++ +         V+ +    L  R+L + A    
Sbjct: 523 TISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSYELLAYRELVNPAA--- 577

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPS 881
           + Y +       R+PD       TA +I P   ++  +  Q+WID   +++ N+  D P 
Sbjct: 578 MPYAE---DEATRLPD----YFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFPF 630

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +  D IY  A   GLK     R   A
Sbjct: 631 EQFKD-IYLYASDSGLKGCTTFRFNPA 656


>gi|198434254|ref|XP_002126546.1| PREDICTED: similar to Ribonucleotide reductase M1 [Ciona
           intestinalis]
          Length = 263

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 117/180 (65%), Gaps = 6/180 (3%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W++LK+R+   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  
Sbjct: 50  WNKLKQRIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNQH 109

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ +L + +LW+E +   +  ++GSI NI  IPDDLK+++ T +EI    +++ A+ R  
Sbjct: 110 LLKDLTEMNLWNEDVKLQMIANNGSIQNIPNIPDDLKQLYRTVWEISQKNIVKMAADRAA 169

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGV 919
           +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A      +V+K+ LK V
Sbjct: 170 FIDQSQSLNIHIAEPNYAKLTSMHFFGWKSGLKTGMYYLRTKPAAQAIQFTVDKNKLKDV 229


>gi|189463959|ref|ZP_03012744.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
 gi|189438532|gb|EDV07517.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
          Length = 845

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 160/688 (23%), Positives = 293/688 (42%), Gaps = 111/688 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LLDHFRYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                      +  E  V ++I+A  LW+K++   +++  P + F D     S P  +  
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       F+++     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFNFELFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEK----------AKKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+          ++   HT R +              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIIEKIDADPESEDVRHTERVLWDKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   +L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPQL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSI----G 832
           +  +Y  +  ++ + T V+   V+E    D ++E ++   K+        H+ S      
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHPKFVTWMEAQGHNPSKRYTQE 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
            I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +
Sbjct: 565 EIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLK 917
           AW  G K  T Y   SRS   +   + K
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDK 652


>gi|288802022|ref|ZP_06407463.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
 gi|288335457|gb|EFC73891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
          Length = 866

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 174/724 (24%), Positives = 309/724 (42%), Gaps = 125/724 (17%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           FD  + A+ L Y   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E 
Sbjct: 9   FDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIANEIARIEN 64

Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385
           + +    A E ++LL  F ++    S  T   +  +   LS+CF+  +    D YG I  
Sbjct: 65  KYKNPLTAQEVFDLLDHFRYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNADSYGAIMR 124

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   V Q G+R 
Sbjct: 125 IDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  +    P 
Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDKTYVQQFPT 239

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             S                        E  V ++ISA ALW K++   +++  P + F D
Sbjct: 240 NSS------------------------EPSVTKEISAKALWEKIVHNAWKSAEPGVLFWD 275

Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  +     S+N C EI L         C L S+NL ++  +      +F
Sbjct: 276 TIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARF 331

Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652
           D +      + A R++D++ID+                          H  EK KK +  
Sbjct: 332 DMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKKKSCQ 391

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+  + 
Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAFEIYD 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
               ++  F    I  L E   +L         ++++KK     G RN  C+ IAPT T 
Sbjct: 452 AKREEKNPF----ILRLKEADGQL---------YEDMKK----YGRRNIACLTIAPTGTT 494

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + +   +  I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++    YH   +
Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHRKFL 548

Query: 832 GNIERIPDDLKKIH----------------ATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             +E    D KK +                ATA ++D +  +      QKW+D + S+ +
Sbjct: 549 TWMEVNGIDTKKKYSQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTV 608

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVPVTD 930
            L     ++L + +Y +AW  G K  T Y   SRS    SV K      +  ++   V D
Sbjct: 609 NLPNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKD 668

Query: 931 PNSS 934
            NS+
Sbjct: 669 LNSA 672


>gi|218264324|ref|ZP_03478181.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222092|gb|EEC94742.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
          Length = 856

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 149/628 (23%), Positives = 262/628 (41%), Gaps = 105/628 (16%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394
           E +NL   F ++    S  T   +  +   LS+CF+  +  D   YG I    +E   L 
Sbjct: 82  ELFNLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQVQLM 141

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 142 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 200

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM+ V         +P         Y
Sbjct: 201 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVVNG------TP---------Y 241

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            +++ I         D  E    ++I+A  LW+K++   +++  P + F D     S P 
Sbjct: 242 KQQYPI---------DSSEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILKESVPD 292

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  +     S+N C EI L         C L +INL ++  N       FD+D     +
Sbjct: 293 SYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348

Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK +K     R  G+G+ 
Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDTDPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA   A++  + ++  A  +SVE+A+ERGA+  +     ++  F
Sbjct: 409 AEGDMIAALGLRYGTEEATVFAEKVQKMLALAAYRSSVEMAKERGAFDIYDAKREEKNPF 468

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E   EL         +D++ K     G RN  C+ IAPT T + +   +  
Sbjct: 469 ----INRLREADPEL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQTTSG 511

Query: 782 IDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------- 833
           I+P +  +Y  +  ++ +        V+E    D ++E ++   K+    + N       
Sbjct: 512 IEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFVTWMLANGFSASKK 569

Query: 834 -----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
                +E +        AT+ ++D +  +    R QKW+D + S+ + L     + L + 
Sbjct: 570 YTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTEDLVNS 629

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +Y +AW  G K     R  S + V  ST
Sbjct: 630 LYVEAWRCGCKGCTVYRDGSRSGVLLST 657


>gi|260593155|ref|ZP_05858613.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
 gi|260534863|gb|EEX17480.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
          Length = 902

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 172/713 (24%), Positives = 301/713 (42%), Gaps = 121/713 (16%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFF 321
           +K  ++      FD VY  + L Y   F  + L  ++  ++Y +  +   I  + P+   
Sbjct: 33  LKRTMVTNQTYSFDEVYQTS-LAY---FNGDELAARVWVNKYAMKDSLGNIYEKSPEQMH 88

Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTT 375
            R+A  +A  E  K K  +   E +NLL  F ++    + +   G  H    LS+CF+  
Sbjct: 89  RRIAKEIARIE-HKYKNPLTEEEIFNLLDHFRYIIPAGSPMTGIGNDHQVASLSNCFVIG 147

Query: 376 VPDDL--YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  D   YG I    +E   L K  GG+G+D + +R  G+ +H +   S G++PF++  +
Sbjct: 148 LDGDADSYGAILRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVHNSALTSTGLVPFMERYS 207

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           ++   V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ 
Sbjct: 208 NSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMRA 262

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
              +                 Y ++F I         D  E K  +K+SA ALW K++  
Sbjct: 263 AIDDKP---------------YEQQFPI---------DSTEPKCTKKVSAKALWEKIVHN 298

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLL 608
            +++  P + F D     S P  +  +     S+N C EI L         C L S+NL 
Sbjct: 299 AWKSAEPGVLFWDTIIRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSLNLY 354

Query: 609 AH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINC----------------------- 640
           ++    F ++  FD+D  +   + A R++D+++D+                         
Sbjct: 355 SYVLDPFTDHACFDFDLFSKHAQLAQRIMDDIVDLEMEKIDLIMAKVKSDPQVDEVKEAE 414

Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            H  EK K  +   R  G+G+      +  + + Y + EA + +      ++ +A  +SV
Sbjct: 415 YHLWEKIKDKSGKGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHRALALNAYRSSV 474

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            +A+ERGA++ +     +   F    I  L E   +L         ++E+ +     G R
Sbjct: 475 RMAEERGAFAIYDAKREEHNPF----ILRLKEADAQL---------YEEMIR----YGRR 517

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNE 809
           N  C+ IAPT T + +   +  I+P +  +Y +        +++  DF   V +SF    
Sbjct: 518 NIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYI 577

Query: 810 LKQRDL--WDE--AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +  R    W E   + +  KY    I   ++R P       ATA ++D +  +      Q
Sbjct: 578 VYHRKFLTWMEVNGIDTQKKYSQEEIDTLVKRSP----YYKATANDVDWLMKVRMQGTIQ 633

Query: 865 KWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914
           KW+D + S+ + L     + L + +Y +AW  G K  T Y   SRS   +  S
Sbjct: 634 KWVDHSISVTVNLPNSVDEALVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVS 686


>gi|326914626|ref|XP_003203625.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Meleagris gallopavo]
          Length = 221

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK+++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  
Sbjct: 12  WKALKEKIAKHGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPH 71

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ +L +R LW+E M + +  H+GSI NI  IP DLK+++ T +EI    +++ A+ R  
Sbjct: 72  LLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGA 131

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 132 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 183


>gi|254000336|ref|YP_003052399.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|313202290|ref|YP_004040948.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
 gi|253987015|gb|ACT51872.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|312441606|gb|ADQ85712.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
          Length = 714

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 153/628 (24%), Positives = 270/628 (42%), Gaps = 67/628 (10%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLTT- 375
           + RVA  LA  E    KR+  +   L +     + +     N+G +   P  S+   T  
Sbjct: 47  YKRVARALADAEETDAKRSFWYERFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 106

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D + GI   + E  +  K   G+G +++ +R  GA + G    + G + F+ + + 
Sbjct: 107 GIIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 166

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   FM+ V
Sbjct: 167 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKREAG----RLRQFNLSTLITKEFMEAV 222

Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKIS 541
             +A W L  P            + D   +  +E+ +  +   R++D G++  +V++ I 
Sbjct: 223 KADAEWKLAFPVTEKEANQDSLNLEDPTQVVWREWPVKNKYLTRESD-GKVACRVYKTIK 281

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW  +++  ++   P     D  N  +       + ++N C E  L         C 
Sbjct: 282 AQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP----YGACL 337

Query: 602 LGSINLLAH----FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL       F +   FD+++    + T  R+LDNV+++N   + + +      R  
Sbjct: 338 LGSVNLTKFVREPFTDKAWFDWEEYREVVATFTRMLDNVVEVNGLPLPQQQAEIMRKRRH 397

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YS 709
           G+G +G  S L +L + Y    ++   +E  + ++       VELA+E+G        + 
Sbjct: 398 GMGYLGLGSTLTMLKMKYGDDASLTFTEEVTKIMAEVGWQVGVELAEEKGPAPIMDEEFV 457

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMA 765
                L  +     D I L  +V+ ++ M   SR     P D+L+K++   G+R ++  +
Sbjct: 458 VTADLLAKRPEMVKDGIKLGDKVKGKVLMGLYSRYMQQFP-DKLRKQIAKNGVRFTHHSS 516

Query: 766 IAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDE 818
           IAPT TI    AN    S  I+PS+ + Y ++ +         V+ F    L  R+L + 
Sbjct: 517 IAPTGTISLSLAN--NASNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRELIN- 573

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLY 876
              S + + D     +     D   I A A  +D    I++A+  QKWID   ++++N+ 
Sbjct: 574 --ASAMPFSDKPEEQLPEYFMDSSTISAKA-HVD----IQAAA--QKWIDSSISKTINVP 624

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            D   G   D IY  A+  GLK     R
Sbjct: 625 TDYDFGDFKD-IYLYAYEKGLKGCTTFR 651


>gi|237712420|ref|ZP_04542901.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726611|ref|ZP_04557092.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435137|gb|EEO45214.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453741|gb|EEO59462.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 848

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 165/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399
             F ++    S  T   +  +   LS+CF+  + D     +GA+    +E   L K  GG
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D 
Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E F+D +   G    +    N +  + D FM+       +    P  V     ++ KE  
Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
                               I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + +A E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E ++   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664


>gi|282880763|ref|ZP_06289459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305297|gb|EFA97361.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
          Length = 861

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 158/684 (23%), Positives = 289/684 (42%), Gaps = 109/684 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F+ + L  ++  ++Y +  +   I  + P+    R+A  +   E + E    A E + LL
Sbjct: 20  FSGDELAARVWVNKYAMKDSFGHIYEKSPKDMHWRIANEIVRIENKYENPLSAQEVFELL 79

Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    + +   G  H    LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFKYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +                 Y ++F +
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDEFMQAAIDDKP---------------YVQQFPV 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D  E  + ++I+A +LW K++   +++  P + F D     S P  +  + 
Sbjct: 240 ---------DSDEPSMKKEIAAKSLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L SINL ++  N       FD +K A  ++ A R+
Sbjct: 291 FRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVVNPFTSDAYFDMEKFAKHVQIAQRL 346

Query: 632 LDNVID-----INC-------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D     I+C                   H  EK K+ +   R  G+G+      L
Sbjct: 347 MDDIVDLELEKIDCILEKIKLDPQSEEVKETERHLWEKIKRKSGQGRRTGVGITAEGDML 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA E +    + ++ +A  +SV +AQERGA+  F                
Sbjct: 407 AAMGLRYGTKEATEFSVNIHKTLALNAYRSSVTMAQERGAFEVFDAK------------- 453

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              E  +   +      P  +L + ++  G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 454 --REANNPFLLRIKEADP--QLYEDLQKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++   T V+   V+E+   D ++E ++   K+ +    N            I
Sbjct: 510 PVYKRRRKVNPSDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMKVNGIDTTKRYTQEEI 567

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           +++ +      ATA ++D +  ++     QKW+D + S+ + L     + L + +Y +AW
Sbjct: 568 DQLVEQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPHDVDEALVNRLYVEAW 627

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
             G K     R  S   V  S  K
Sbjct: 628 KSGCKGCTIYRDGSRAGVMISVSK 651


>gi|265752122|ref|ZP_06087915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236914|gb|EEZ22384.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 848

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 165/702 (23%), Positives = 291/702 (41%), Gaps = 117/702 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGG 399
             F ++    S  T   +  +   LS+CF+  + D     +GA+    +E   L K  GG
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGI-DGAADSYGAIIRIDEEQVQLMKRRGG 137

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D 
Sbjct: 138 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDS 196

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E F+D +   G    +    N +  + D FM+       +    P  V     ++ KE  
Sbjct: 197 EAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYP--VDSDQPVFTKE-- 248

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV 578
                               I A ALW+K++   +++  P + F D     S P  +  +
Sbjct: 249 --------------------IDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADL 288

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  N       FD+D     +  A R
Sbjct: 289 GYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQR 344

Query: 631 VLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMGFQS 665
           ++D++ID+    IEK                          KKS    R  G+G+     
Sbjct: 345 IMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRT-GVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + + Y + +A E +++  + I+  A  +SV +A+ERGA++ +         F    
Sbjct: 404 MLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++E+KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLKEADPNL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--------- 833
           +  +Y    K N +   T V+   V+E    D ++E ++   K+ +    N         
Sbjct: 507 FMPVYKRRRKVNPNDPQTHVD--FVDETG--DAFEEYIVFHHKFVEWMTVNGYDPTKRYT 562

Query: 834 ---IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y
Sbjct: 563 QEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 623 VEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664


>gi|154491701|ref|ZP_02031327.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
 gi|154087942|gb|EDN86987.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
          Length = 856

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 149/628 (23%), Positives = 262/628 (41%), Gaps = 105/628 (16%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL--YG-IFGALQENAMLA 394
           E + L   F ++    S  T   +  +   LS+CF+  +  D   YG I    +E   L 
Sbjct: 82  ELFALFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQVQLM 141

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 142 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 200

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  I D FM+ V         +P         Y
Sbjct: 201 KHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVING------TP---------Y 241

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            +++ I         D  E    ++I+A  LW+K++   +++  P + F D     S P 
Sbjct: 242 KQQYPI---------DSSEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILRESVPD 292

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  +     S+N C EI L         C L +INL ++  N       FD+D     +
Sbjct: 293 SYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348

Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK +K     R  G+G+ 
Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDADPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA E A++  + ++  A  +SVE+A+ERGA+  +     ++  F
Sbjct: 409 AEGDMIAALGLRYGTEEATEFAEKVQKMLALAAYRSSVEMAKERGAFDIYDAKREEKNPF 468

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E   EL         +D++ K     G RN  C+ IAPT T + +   +  
Sbjct: 469 ----INRLREADPEL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQTTSG 511

Query: 782 IDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------- 833
           I+P +  +Y  +  ++ +        V+E    D ++E ++   K+    + N       
Sbjct: 512 IEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFVTWMLANGFSASKK 569

Query: 834 -----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
                +E +        AT+ ++D +  +    R QKW+D + S+ + L     + L + 
Sbjct: 570 YTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTEDLVNS 629

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +Y +AW  G K     R  S + V  ST
Sbjct: 630 LYVEAWKCGCKGCTVYRDGSRSGVLLST 657


>gi|330995971|ref|ZP_08319865.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
 gi|329573968|gb|EGG55546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
          Length = 845

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 156/652 (23%), Positives = 266/652 (40%), Gaps = 109/652 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371
           P+    R+A  +A  E + E   +A E + LL  F ++    + +   G  H    LS+C
Sbjct: 47  PEDMHWRIANEIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNC 106

Query: 372 FLTTV---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D   GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF+
Sbjct: 107 FVIGLDGQADSYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 166

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  I D 
Sbjct: 167 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDE 221

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM    +   +T   P                         D     V + I+A  LW+K
Sbjct: 222 FMHAAIEGKSYTQQYP------------------------IDSSSPMVAKDINAQDLWKK 257

Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604
           ++   +++  P + F D     S P  +  +     S+N C EI L         C L +
Sbjct: 258 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 313

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC------------------- 640
           INL A+  N       FD+D     ++ A R++D++ID+                     
Sbjct: 314 INLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKVDADPESEEV 373

Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                H  EK  K +   R  G+G+      L  L + Y + EA + A E  + ++  A 
Sbjct: 374 KGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAY 433

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV++A+ERGA+  F         F    I  L E   EL  N                
Sbjct: 434 RSSVQMAKERGAFKIFDAEREKNNPF----INRLREADPELYENMVK------------- 476

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814
            G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   ++E    D
Sbjct: 477 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETG--D 534

Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862
            ++E ++   K+        +D      +   D+L        ATA ++D +  ++    
Sbjct: 535 AFEEYIVYHHKFLTWMKINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGA 594

Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSV 911
            QKW+D + S+ + L     ++L + +Y +AW  G K  T Y   SRS   +
Sbjct: 595 IQKWVDHSISVTVNLPNNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMI 646


>gi|15451586|gb|AAK98710.1|AC069158_22 Putative ribonucleotide reductase [Oryza sativa Japonica Group]
          Length = 236

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 111/177 (62%), Gaps = 1/177 (0%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++R  W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 21  SARWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 80

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +EI    +++ A
Sbjct: 81  VVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMA 140

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A    K T+
Sbjct: 141 IDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTV 197


>gi|94263673|ref|ZP_01287482.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
 gi|93455978|gb|EAT06133.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 35/274 (12%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL     + + D++KL   +R AV  LDNV+DIN + + + ++    +R IGLG
Sbjct: 675 CNLGSINLARMVTDKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKIGLG 734

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY+S EA   A+E M FI   A+ AS+EL + RG + +F  S++   
Sbjct: 735 VMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIYG-- 792

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                          ++     +RN+    IAPT TI+ + G S
Sbjct: 793 -------------------------------RQDPDRPVRNATRTTIAPTGTISILAGCS 821

Query: 780 QSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             ++P +   +++  M  D    VN       K+ + +   +I  + Y +G++  IE +P
Sbjct: 822 SGVEPLFAVSFLRRVMDNDELFEVNPLFEAVAKKENFYSHELIRQIAY-NGTVAGIEEVP 880

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
              ++I  TA +I P   +E  +  Q+  + A S
Sbjct: 881 QKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVS 914



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 38/293 (12%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G  +E PQ    RVA  +A       +  + E   ++FYNL++   FM
Sbjct: 27  VLKKRYLKKDEHGKVLETPQQMLWRVAKTVAEADHLYAQGADTEALGLDFYNLMAGLEFM 86

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  ++ +R    
Sbjct: 87  PNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFSRIRPKND 146

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ ++     D
Sbjct: 147 VVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKVK----SD 202

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               H+ N +  I D FM+ +  N  + L +P                   N E      
Sbjct: 203 LDLLHNFNLSVAITDEFMRALADNGEYALRNP------------------RNNE------ 238

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              + R  SA  ++R+++   + +G P + F D  N  +P    G + S+N C
Sbjct: 239 ---IIRYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNPC 288


>gi|29347555|ref|NP_811058.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339455|gb|AAO77252.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 796

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 154/631 (24%), Positives = 265/631 (41%), Gaps = 107/631 (16%)

Query: 339 AVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAM 392
           A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D YG I    +E   
Sbjct: 22  AKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQ 81

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +
Sbjct: 82  LMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSV 140

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D E F+D +   G    +    N +  + D FM+       +    P E ++   
Sbjct: 141 SIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYIQQYPIESANP-- 194

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS- 571
                                    ++I A  LW+K++   +++  P + F D     S 
Sbjct: 195 ----------------------TTTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESV 232

Query: 572 PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
           P  +  + +   S+N C EI L         C L +INL ++  N       FD++    
Sbjct: 233 PDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFKK 288

Query: 624 TIRTAVRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGL 658
            +  A R++D++ID+    IE+                          KKS    R  G+
Sbjct: 289 HVALAQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRT-GV 347

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +       
Sbjct: 348 GITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQN 407

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             F    I  LAE   EL         + E+KK     G RN  C+ IAPT T + +   
Sbjct: 408 NPF----IQRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQT 450

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHD 828
           +  I+P +  +Y  +  ++ + T V+   V+E    D ++E ++   K         Y  
Sbjct: 451 TSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDP 508

Query: 829 GSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
               + E I + + K     AT+ ++D +  ++   R QKW+D + S+ + L     + L
Sbjct: 509 AKRYSQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDL 568

Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + +Y +AW  G K     R  S + V  ST
Sbjct: 569 VNRLYVEAWKSGCKGCTVYRDGSRSGVLIST 599


>gi|297539886|ref|YP_003675655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
 gi|297259233|gb|ADI31078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
          Length = 721

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 164/669 (24%), Positives = 286/669 (42%), Gaps = 78/669 (11%)

Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNL 345
           E++   + + L I   +Y L    G  ++    A + RVA  LA  ET  EKRA      
Sbjct: 16  EKEIPIQAVSLDIWDKKYRLKTKAGEHVDADIDASYARVARALADVETTDEKRAEWHEKF 75

Query: 346 LSSFH--FMCSTPTLFNSGT-RHPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSG 398
           L +     + +     N+G   H   +S    TV     D +  I G + E  +  K   
Sbjct: 76  LWALRRGAIPAGRITSNAGALEHKPATSTINCTVSGVISDSMDDILGKVHEAGLTLKAGC 135

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H D
Sbjct: 136 GIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVS 508
           V +F+  ++  G    R    N +  I   FM+ V  +A W L  P             +
Sbjct: 196 VTDFIKAKRENG----RLRQFNLSCLITKEFMEAVKADAEWKLAFPVTEKEAIIDGLNTN 251

Query: 509 DLHDLYGKEFEIA--YENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DL  +  +E+ I   Y       D G++  +V++ I A  LW  +++  ++   P     
Sbjct: 252 DLAQVVWREWPIKGKYLTKLDGVDAGKVACRVYKTIKARRLWDVIMSSTYDFAEPGFILI 311

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ-FDYD 619
           D  N  +       + ++N C E  L         C LGS+NL       F +   FD+ 
Sbjct: 312 DRVNEMNNNWFCENIRTTNPCGEQPLPP----YGACLLGSVNLTRFVKKPFTDEAYFDWK 367

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +    +    R+LDNV++IN   +++ +      R  G+G +G  S+L ++ + Y   E+
Sbjct: 368 EYREVVAIFTRMLDNVVEINGLPLQEQRDEIMRKRRHGMGYLGLGSSLTMMKLKYGEEES 427

Query: 680 VEIADESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEV 732
           ++  DE    ++    +  V+LA+E+G        +      L  +     D I +  ++
Sbjct: 428 LKFTDEVTRVMAEEGWNTGVQLAEEKGPAPIMDEKFEVTADMLAKRPEMAADGIKVGQKI 487

Query: 733 RDELAMNRTSR----LPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDP 784
             ++ + + SR     P + L+ ++   G+R ++  +IAPT TI    AN    S  I+P
Sbjct: 488 AGKVLLGKYSRYMQQFP-EGLRNQIAAKGVRFTHHSSIAPTGTISLSLAN--NASNGIEP 544

Query: 785 SYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-- 839
           S+ + Y ++ +         V+ F    L  R+L +    + + + D      E++PD  
Sbjct: 545 SFAHHYARNVIREGKKSKEKVDVFSYELLAYRELINP---NAMPFSDKP---EEQLPDYF 598

Query: 840 -DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF--IYRQAWLM 895
            D   I A A  +D    I++AS  QKWID   S++  ++ P+     DF  IY  A+  
Sbjct: 599 LDSSTIMAKA-HVD----IQAAS--QKWID--SSISKTINVPTDYDFEDFKNIYLYAYDK 649

Query: 896 GLKTTYYLR 904
           GLK     R
Sbjct: 650 GLKGCTTFR 658


>gi|209694807|ref|YP_002262735.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
 gi|208008758|emb|CAQ78955.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
          Length = 717

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 163/658 (24%), Positives = 280/658 (42%), Gaps = 62/658 (9%)

Query: 290 DFAFEYLGLQILYDRYFL-HINGSRIEMP-QAFFMRVAMGLA-LKETEKEKRAVEFYNLL 346
           + A++   + I   +Y L +  G+R+++     F RVA  L+ L++  ++K+  E +   
Sbjct: 16  EIAYQSTSMDIWESKYCLKNKQGNRVDLSMDDTFKRVAKALSDLEQPAEQKQWNEQFLWA 75

Query: 347 SSFHFMCSTPTLFNSGT--RHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGLG 401
                + +     N+G     P  S+   T   T+ D +  I G + E  +  K   G+G
Sbjct: 76  LRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTIVDSMDDILGKVHEAGLTLKAGCGIG 135

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV +
Sbjct: 136 YDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVID 195

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----DLHDLYG-- 515
           F+  ++  G    R    N +  I + F++ V     W L  P  +     D  DLY   
Sbjct: 196 FIRAKREDG----RLRQFNLSLLITEDFVEAVKNQNDWQLIFPITLKEAKLDHMDLYSDN 251

Query: 516 ----KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                ++ +     E +      KV+R + A  LW  ++T  ++   P     D  N  +
Sbjct: 252 SVVWADWPVKEGFAENEEGLVACKVYRTMPAQNLWNIIMTSTYDYAEPGFILIDKVNQMN 311

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTI 625
                  + ++N C E  L         C LGSIN L  F  N       FD+D   + +
Sbjct: 312 NNWFCEEIRATNPCGEQPL----PPYGACLLGSIN-LTKFVRNPFTDTAFFDWDAYRNVV 366

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R+LDNV++IN   +E+ +      R  G+G +G  S L +L   Y S E++   ++
Sbjct: 367 SIFTRMLDNVVEINQLPLEQQRHEIMHKRRHGMGFLGLGSTLTMLQHKYGSIESIGFTEQ 426

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAM 738
             + ++     + ++LA E+G+    + S       L  +     D I L  +V+ ++  
Sbjct: 427 VAQEMAVTGWKSGLDLAAEKGSAPIMEESFIVTAKMLRQRPEMAEDGIKLGDKVKGKVLH 486

Query: 739 NRTSR----LPWDELKKRVKTI--GMRNSNCMAIAPTATI----ANICGVSQSIDPSYQN 788
            + SR    L   E K   K I  G+R ++  +IAPT TI    AN    S  I+PS+ +
Sbjct: 487 AKYSRYMQQLAIIEPKLVAKIIEQGVRFTHHSSIAPTGTISLSLAN--NASNGIEPSFAH 544

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            Y ++ +        S  V+      L   A+I+D K    S     ++PD       TA
Sbjct: 545 HYTRNVIKTGKKSKES--VDVYSYELLAYRALIND-KAMPYSTNEENKLPD----YFITA 597

Query: 849 FEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I P   +   +  QKWID   +++ N+  D P  +  D IY  A+  GLK     R
Sbjct: 598 DDITPQQHVAVQAAAQKWIDSSISKTANIPTDFPFEEFKD-IYMDAYDKGLKGCTTFR 654


>gi|55378393|ref|YP_136243.1| ribonucleoside-diphosphate reductase subunit alpha [Haloarcula
           marismortui ATCC 43049]
 gi|55231118|gb|AAV46537.1| ribonucleoside-diphosphate reductase alpha chain [Haloarcula
           marismortui ATCC 43049]
          Length = 1032

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 160/664 (24%), Positives = 262/664 (39%), Gaps = 142/664 (21%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F   +    FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G
Sbjct: 148 FQEQMEQLSFMPNSPTLMNAGDELQQLSACFVDSPGDDIDDIHQTAKEAAQVFQSGGGMG 207

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +
Sbjct: 208 YAFWKLRPYGDPVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVIQ 267

Query: 462 FL-----------DLRKNTGDD-------------RRRTHD------------------M 479
           F+            LR N  DD             R    D                   
Sbjct: 268 FIHAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDDDGQVPKHLRNAVEGHLSNF 327

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQAD 530
           N +  + D FM+ +     +T  +P         +E  +L+D++G              +
Sbjct: 328 NISVGVTDDFMEALKAGEEFTFTNPRTGDAHIVTEETKELYDMFGL------------GE 375

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--------SS 582
             E+     I A  LW  ++    E G P + + +  N    +QH   V         ++
Sbjct: 376 HVEVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVN----KQHSFDVEEHPDHEILAT 431

Query: 583 NLCTEITLNSSSEETAVCNLGSINLL---------------AH-------------FANN 614
           N C E  L    EE   CNLG INL                AH             F   
Sbjct: 432 NPCGEQPL----EEYEACNLGHINLSTLAATDAPDWRVWSEAHADEYDSIDAAIDAFLEE 487

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D+D+    I    R L+NV+ ++   +EK ++     R IGLG+MG       L + Y
Sbjct: 488 AIDWDEFDRRIELGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGVAY 547

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA EIA ++M  I+  + +AS ELA+ERG ++ ++ S +     P D      +   
Sbjct: 548 GTEEANEIARQTMRHINHGSKAASHELAEERGVFTEWENSKY---ANPTDYSDWFEKQTG 604

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS- 793
           E A +     P            +RN N   IAPT T + I   +   +P Y   Y K+ 
Sbjct: 605 EDAADWEDGYP------------IRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNV 652

Query: 794 --NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDLKK 843
             ++ GD  +V  + + +  L+  D+  EA+  + +        DG  G +  +PD + +
Sbjct: 653 SDDVQGDEMLVEFDDYFLRALEDNDIDVEAVKQEAQEQMANNEFDGVDG-LTTVPDAIGE 711

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898
           +  T  ++            Q+ +D A  +++N   D   E + +  ++IY      G  
Sbjct: 712 LFVTTGDLSAKQHAGIQVACQEGVDSAISKTVNAPNDSTTEDAAEVFEYIYDHG---GKG 768

Query: 899 TTYY 902
            TYY
Sbjct: 769 VTYY 772


>gi|330831086|ref|YP_004394038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
 gi|328806222|gb|AEB51421.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
          Length = 715

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 153/627 (24%), Positives = 259/627 (41%), Gaps = 66/627 (10%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TV 376
           + RVA  LA +E E E     F   L +        T       H   +S   C ++ T+
Sbjct: 49  YQRVARALAEQELEPEAWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTI 108

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D +  I G + E  +  K   G+G D++ +R  GA + G    + G + F+ + +    
Sbjct: 109 EDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCF 168

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+  G R+GA    ++  H DV EF+  ++  G    R    N +  I + F+K V ++
Sbjct: 169 TVSSAGGRRGAQMGTMDIRHPDVIEFIQAKREDG----RLRQFNLSLLITEDFVKAVKED 224

Query: 497 AGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFRKISAVALW 546
           A W+L  P    EV           ++ + ++  +      + G++  KV++ + A  LW
Sbjct: 225 APWSLIFPYTAKEVEQDGIALDDPAQVLWADWPNKEGVVFNELGQVACKVYKTMPARKLW 284

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++T  ++   P     D  N  +       + ++N C E  L         C LGS+N
Sbjct: 285 NVIMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVN 340

Query: 607 LLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L     +       FD+      +    R+LDNV++IN   + K ++     R  G+G +
Sbjct: 341 LTKFVRDPFTESAAFDWQAFRKVVAIFTRMLDNVVEINQLPLAKQREEITAKRRHGMGFL 400

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV- 720
           G  S L +L I Y S  +V   ++  + ++      S+ LA+E+G     +      G  
Sbjct: 401 GLGSTLTMLQIKYGSAASVAFTEQVSQELAMTGWQESLRLAKEKGPAPIMEQEFEVTGKM 460

Query: 721 ------FPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAP 768
                    D I +  +V+ ++   R SR           L   +  +G R ++  +IAP
Sbjct: 461 LRLRPEMAADGIKVGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAP 520

Query: 769 TATI----ANICGVSQSIDPSYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDEA 819
           T TI    AN    S  I+PS+ + Y ++ +     S +   V SF +  L  R+L + A
Sbjct: 521 TGTISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSFEL--LAYRELVNPA 576

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877
                 Y D       R+PD       TA +I P   ++  +  Q WID   +++ N+  
Sbjct: 577 ATP---YAD---DEASRLPD----YFITADDISPAQHVDIQAAAQHWIDSSISKTANVPT 626

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           D P  +  D IY  A   GLK     R
Sbjct: 627 DFPFEQFKD-IYMYASDSGLKGCTTFR 652


>gi|310778932|ref|YP_003967265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
 gi|309748255|gb|ADO82917.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
          Length = 750

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 140/549 (25%), Positives = 245/549 (44%), Gaps = 79/549 (14%)

Query: 369 SSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           S+C++ T PDD +  IF   ++ A    Y GG G D + +R  G+ ++ +   + G + F
Sbjct: 77  SNCYVITPPDDNIESIFETAKKLARTFSYGGGCGVDISNLRPKGSEVNNSAKHTTGAVSF 136

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           + + N T   + Q G+R GA+   ++  H DVE+F+ ++     D  +    N +  I D
Sbjct: 137 MDLYNLTTDIIGQKGRR-GALMLSIDVNHPDVEDFIKVK----SDLNKIQKANISVRIND 191

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FMK V +                D++  EF +         D GE  + +K++A  L++
Sbjct: 192 EFMKAVEKG---------------DMFKTEFIVG--------DTGET-ITKKVNARLLFK 227

Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++    +    P + F D     N+ S  +       +N C E  L         C LGS
Sbjct: 228 ELARQNWNFAEPGVLFWDTISNWNLLSEDEEFEYA-GTNPCAEEPLPPGGS----CLLGS 282

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMG 662
           I L +      F++++LA  +R  V+ L++V+D  +  H +E+ + S    R IGLG++G
Sbjct: 283 IVLPSFIEGEVFNFERLAERVRDGVKALNDVLDEGLPLHPLEEQRDSVRDWRQIGLGILG 342

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L  + + Y SPE++E  D+  + I  +A+ AS  LA+E+G++  +K          
Sbjct: 343 LGDLLINMKLKYGSPESLEFCDKVSKTIVDNALRASALLAKEQGSFPKYKK--------- 393

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D +     ++D  +         DE  + ++  G+RNS  + IAPT +I  +   S  I
Sbjct: 394 -DKVLASPFLKDNAS---------DETIELIEKYGLRNSQLLTIAPTGSIGTMLRTSTGI 443

Query: 783 DPSYQNLYVKSNMS--GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           +P++   Y +   S  G+      F       +D  DE  I D               +D
Sbjct: 444 EPNFAFFYTRKTESLHGEDVFYKVFTP---IAKDYMDENGIED--------------END 486

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
           L     TA  ++P   I+     Q+ ID + S  + L  + S ++++ +Y +AW  GLK 
Sbjct: 487 LPDYFVTAQNLNPFDRIKMQGIWQRRIDASISSTINLVHKTSIEEVEDLYIEAWKQGLKG 546

Query: 900 TYYLRSRSA 908
               R+  A
Sbjct: 547 MTIYRAGCA 555


>gi|94265072|ref|ZP_01288839.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
 gi|93454451|gb|EAT04742.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 35/274 (12%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    A+ + D++KL   +R AV  LDNV+DIN + + + ++    +R IGLG
Sbjct: 675 CNLGSINLARMVADKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKIGLG 734

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY+S EA   A+E M FI   A+ AS+EL + RG + +F  S++   
Sbjct: 735 VMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIYG-- 792

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                          ++     +RN+    IAPT TI+ +   S
Sbjct: 793 -------------------------------RQDPDRPVRNATRTTIAPTGTISILASCS 821

Query: 780 QSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             ++P +   +++  M  D    VN       K+ + +   +I  + Y +G++  IE +P
Sbjct: 822 SGVEPLFAVSFLRRVMDNDELFEVNPLFEAMAKKENFYSHELIRQIAY-NGTVAGIEEVP 880

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
              ++I  TA +I P   +E  +  Q+  + A S
Sbjct: 881 QKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVS 914



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 38/293 (12%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G  +E PQ    RVA  +A       +  + E  A++FYNL++   FM
Sbjct: 27  VLKKRYLKKDEHGKVLETPQQMLWRVARTVAEADHLYTQGADTEALALDFYNLMAGLEFM 86

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  ++ +R    
Sbjct: 87  PNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSFSRIRPKND 146

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ ++     D
Sbjct: 147 VVHSTKGVSSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIKVK----SD 202

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               H+ N +  I D FM+ +  N  + L +P                   N E      
Sbjct: 203 LDLLHNFNLSVAITDEFMRALADNGEYALRNP------------------RNNE------ 238

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              V +  SA  ++R+++   + +G P + F D  N  +P    G + S+N C
Sbjct: 239 ---VVKYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNPC 288


>gi|115379423|ref|ZP_01466524.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822416|ref|YP_003954774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363562|gb|EAU62696.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395488|gb|ADO72947.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
          Length = 926

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 162/676 (23%), Positives = 265/676 (39%), Gaps = 110/676 (16%)

Query: 292 AFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVA---------MGLALKETEKEKRAV 340
           A+  L   ++  +YF  + G+  R    +    RV           G   +E ++E    
Sbjct: 72  AWSMLATNVVASKYFRGVPGTPEREGSVRKLVARVVDTLTRWGQEGGYFAREQDRETFQA 131

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  +LL       ++P  FN G    PQ S+CF+ +V D +  I    +  AML KY  G
Sbjct: 132 ELTHLLLRQKAAFNSPVWFNVGVEEQPQCSACFINSVEDSMESILTLAKTEAMLFKYGSG 191

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G++ +P+R    H+ G  G + G + F+K  +  A  V  GGK R+ A    L   H D
Sbjct: 192 TGSNLSPLRSSREHLTG-GGTASGPVSFMKGFDAFAGVVKSGGKTRRAAKMVILNASHPD 250

Query: 459 VEEFLDLRKN-----------------TGDDRRRTHDMNTAN--WIPDLFMKRVTQNAGW 499
           + +F+  + N                  GD        N+ N   + D FM+ V  +  W
Sbjct: 251 ILDFIRCKTNEEKKAWALIEAGYDASFNGDAYGSVFFQNSNNSVRVTDEFMRAVVNDGTW 310

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           T         + D    E  +A E            +FR+IS  A            G P
Sbjct: 311 T------TRAVRDGQAMETHMARE------------LFREISEAA---------HLCGDP 343

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617
            + F    N      +   +++SN C+E      S     CNL S+NL+ HF   +  FD
Sbjct: 344 GLQFDTTVNAWHTCANTARINASNPCSEYMFLDDS----ACNLASLNLM-HFRTIDGCFD 398

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                  +   +  ++ ++  + +  EK  +++H +R +GLG     + L    +PY SP
Sbjct: 399 PVAFKHAVDVVLLAMEIIVGFSRYPTEKITRNSHDYRPLGLGYANLGALLMACGLPYDSP 458

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--- 734
           E    A      +   A +AS  LA+  G ++ +      Q   P+  +G++ + R    
Sbjct: 459 EGRNYAGAITSLMCGQAYAASARLAERMGPFAGYA-----QNAEPM--LGVIRKHRKAGH 511

Query: 735 ELA-------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
           +LA       ++   +  WDE        G RNS    +APT TI  +    +  I+P  
Sbjct: 512 QLAPEGVNPDLHAAQKAAWDEALALGTEHGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDI 571

Query: 787 QNL-YVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             + Y K    G   +VN  +   L++   R    + +IS L  ++     IE  P  LK
Sbjct: 572 ALIKYKKLVGGGMLKIVNQTVPQALERLGYRQSQAQEIISYLDKNE----TIEGAP-HLK 626

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQ-----------SLNLYLDEPSGKKLDFI--- 888
             H   F  D  +      R  +W+   Q           +++  ++ PS   ++ I   
Sbjct: 627 PEHLPVF--DCAFKPARGKRSIQWMGHIQMMEACQPFLSGAISKTVNMPSNATVEDIEKA 684

Query: 889 YRQAWLMGLKTTYYLR 904
           Y +AW  GLK     R
Sbjct: 685 YLEAWKRGLKAIAVYR 700


>gi|145591871|ref|YP_001153873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
 gi|145283639|gb|ABP51221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
          Length = 1240

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 174/367 (47%), Gaps = 44/367 (11%)

Query: 577  GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----------FDYDKLASTI 625
            G+V  S+ C E   N       VCNL  INL+    +N             D+D LA   
Sbjct: 826  GIV--SHNCAETVQNPFE----VCNLTHINLVKFVKDNCGGGSFEEKLGCIDWDGLAQAA 879

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            R   R LD+ ID +   IE   + N   R  GLG+MGF   L  L +PYAS EAVE+ + 
Sbjct: 880  RVGTRFLDDAIDRSKTGIEVIDEMNAATRKNGLGIMGFAELLIKLGVPYASWEAVELINR 939

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----DSIGLLAE---------- 731
             M +I  +A+  S ELA+E+G +  F  S++ +G  P+    D +    E          
Sbjct: 940  IMGWIYVNALDESAELAREKGPFKFFHKSIYARGEIPVLKFQDHVWSRWERIKRVYPREL 999

Query: 732  ------VRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                  +RD     R    P+ D+L ++V+  G+RNS  ++IAPT   + + G +  ++P
Sbjct: 1000 QEAGDKLRDITMRTRQWLGPYLDKLSEKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEP 1058

Query: 785  SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             +   ++++   G         +  LK R LW    +  +    G + +   +P+D+K +
Sbjct: 1059 VFALAFLRNVTVGTLVEYYEPGIELLKSRGLWT-PQVRKVVEETGMLRDAP-VPEDVKHL 1116

Query: 845  HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
             ATA EI  +W +   +  Q+W+DQ  ++++N+  + P  + + + +  AW +G+K    
Sbjct: 1117 LATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPE-EDVYWAFAFAWAVGVKGITV 1175

Query: 903  LRSRSAT 909
             R +S +
Sbjct: 1176 YRDKSKS 1182



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 159/353 (45%), Gaps = 24/353 (6%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           +L  VYK+       + +  Y E      +  V A LL    ++F L       +++R  
Sbjct: 77  LLGRVYKEAFGKDFLKTKVGYGERAAARFKSLVDAGLLKREALEF-LSKFEPRPEFDRSL 135

Query: 292 AFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
           ++  L L      Y L     R+ E P     RVA  +A +E E   RA  +Y+ ++   
Sbjct: 136 SYNALRL-FTNGNYALRDQNFRLAETPSMAAWRVATAVA-RELE---RARLYYDYITKLK 190

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGIFGALQENAMLAKYSGGLGN 402
            + ++P  FN+ T+    +SCF   V D L        Y I+ AL  + ++ +  GG+G 
Sbjct: 191 IVPASPFWFNAWTKKEMFASCFTLEVEDCLSSITHPGRYCIYDALAYSGIIQQLGGGVGY 250

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D++ +R  G  + G+ G + G I F+++ +     + QGGKR+GA    L  WH D+ +F
Sbjct: 251 DFSLLRPEGDVVRGSVGVASGPISFMRLFDTNVDVIKQGGKRRGAQMGTLHVWHPDIRKF 310

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKR---VTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +  +     D     + N + +  D FM++   + QN  + L +P    +       E+ 
Sbjct: 311 IKAKTGELKD-AHLQNFNISVFADDTFMEKALGIDQNPKYKLINPRAFVEKTGTKPVEY- 368

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                 ER+    E  V+ +I+A  L++++    +++G P + FK   N  +P
Sbjct: 369 ----VDEREVAIPEEAVWGEINAKELFKEIAHGAWDSGDPGMIFKSNLNASNP 417


>gi|171186058|ref|YP_001794977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
 gi|170935270|gb|ACB40531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
          Length = 1240

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 178/373 (47%), Gaps = 43/373 (11%)

Query: 572  PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQF-------DYD 619
            PQ H  +     S+ C E   N       VCNL  INL+      A   F       D++
Sbjct: 818  PQHHRYIAEGIVSHNCAETVQNPFE----VCNLTHINLVKFARECAGKTFEEKLACIDWE 873

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             LA   R   R LD+ ID +   IE   + N   R  GLG+MGF   L  L IPYAS EA
Sbjct: 874  GLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRATRKNGLGIMGFAELLIKLGIPYASWEA 933

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----DSI-GLLAEVRD 734
            VE+ +  M +I  +A+  S ELA+ERG +  F+ S + +G  P+    D + G    VR 
Sbjct: 934  VELINRIMAWIYVNALDESAELARERGPFKFFEKSAYARGEIPVLKFQDYVWGRWERVRG 993

Query: 735  EL------AMNRTSRLP-----W-----DELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             L      A +R   +      W     + L+++V+  G+RNS  ++IAPT   + + G 
Sbjct: 994  ALPPELREAGDRLRGITMRTREWLRPRLEALREKVRG-GVRNSVVLSIAPTGRTSILAGT 1052

Query: 779  SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            +  ++P +   ++++   G         V  L+ R LW   +   ++   G + +   +P
Sbjct: 1053 TSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRARGLWTPQVRKTVE-ETGMLKDAP-LP 1110

Query: 839  DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
            +++K + ATA EI  +W +   +  Q+W+DQ  ++++N+  + P  + + + +  AW +G
Sbjct: 1111 EEVKHLFATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPK-EDVYWAFALAWALG 1169

Query: 897  LKTTYYLRSRSAT 909
            +K     R +S +
Sbjct: 1170 VKGITVYRDKSKS 1182



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 50/378 (13%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P  A+V    LL ++ +EV    + +  K+ + E          RY +      L  ES+
Sbjct: 67  PELAEVAKSHLLGRVYKEVFGKDFLR-HKSGYLERA------LARYRQLAEAGLLKEESL 119

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRVAMGLALK 331
              +    A + K + D +  Y  L++  +  Y L     R+ E P     RVA  +A +
Sbjct: 120 RLLE----AFEPKPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRVATAVA-R 174

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--------YGI 383
           + E  +R   +Y +++S   + ++P  FN+ T+    +SCF   V D L        + I
Sbjct: 175 DVETARR---YYGVITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLSHPGRFCI 231

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ +     + QGGK
Sbjct: 232 YDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVEVIKQGGK 291

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTL 501
           R+GA    L  WH DV +F+  +     D     + N + ++ D FM++        + L
Sbjct: 292 RRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGLDKPEYPL 350

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW-------RKMLTMLF 554
            +P               I  E   R+    E +V     AVA W       R++    +
Sbjct: 351 VNP--------------RIYLERAGRKPVE-ETRVSPPQEAVAGWVDARELFREITEGAW 395

Query: 555 ETGHPWITFKDPCNIRSP 572
           ++G P + +KD  N  +P
Sbjct: 396 DSGDPGVIYKDNLNASNP 413


>gi|257874881|ref|ZP_05654534.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257809047|gb|EEV37867.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 825

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 197/439 (44%), Gaps = 57/439 (12%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C E  L 
Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 AVCNL +INL A+ A+ Q    D+ KL  T++TAVR  DNVID+  +  +K ++
Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFDKNEQ 529

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E+G++
Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   DQ     ++  L  +  D   M    ++P   +++ V   G+RNS+ + +AP
Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFIDTGYMK---KMP-AHIREGVLRFGIRNSHLLTVAP 639

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P Y   Y +S   G F  +N+ +V+E     L D           
Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYYRSGRLGKFIEINAEIVDEY----LMDHP--------- 686

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885
                 ER   +L     +A E+ P   +      Q+W+D   S++  ++ P G    ++
Sbjct: 687 ------ERTKAELPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYTVSQV 738

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSSTHSLG 939
             +YR  +  G K  T Y   SR +  +   TL+ V+ +L A    +PV   +    S  
Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPVASGE 795

Query: 940 IPSSCTSDT-----ECEVC 953
           I   C   T      C  C
Sbjct: 796 ICPICHEGTIEEIGGCSTC 814



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365
           S IE P   F      RVA G++  E   ++R  E F+  + + + + +   L+ +GT +
Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANEAHDQERFFEAFHQQIVAQNLIPAGRVLYGAGT-N 172

Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            Q++  +CF+   + D   GI    QE   +    GG+G + + +R   + +HG +G+S 
Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           G + +L    +    V QGG R+GA    +  WH D+  F+
Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFI 273


>gi|10140983|ref|NP_065560.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
 gi|81984052|sp|O36411|RIR1_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|2338024|gb|AAC58108.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
          Length = 780

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 170/730 (23%), Positives = 293/730 (40%), Gaps = 111/730 (15%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDL-VYLANDL-KYERDFAFEYLGLQILYDRYFLHI 309
           Y E F   +EE V  R L ++    +L +Y+   L  Y+   +   L  +  YD Y L  
Sbjct: 48  YIEKFADVLEENV-LRFLQDNAEMLELCIYMYEQLPAYKAVKSRGILSAKRFYDTYVLRT 106

Query: 310 -NGSRIEMPQAFFMRVA--------MGLALKET----EKEKRA------------VEFYN 344
            +GS  E     FMR+A           ALK T     ++K              + F++
Sbjct: 107 ADGSCYESVSHCFMRIAAFCTVQVLTNSALKITILYLGRDKLFKDLPCSPTMDLFIYFFS 166

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLG 401
            LS     C+TP + ++G R   L+SCFL   PD   +       LQE  ML     G+G
Sbjct: 167 PLSHQLVCCATPIMRSAGLRDANLASCFLIN-PDLSTEKSTTTALLQELTMLLSAKSGVG 225

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + T        I    G     + F           N    R  +V AY+E WH  ++E
Sbjct: 226 CNVTSFGVDEKCIQSCVGLINSQVEFF----------NDQNPRPVSVAAYMEVWHSQIQE 275

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFE 519
           FL ++    ++  R   +     IP LF ++  ++ G  W LF P++  +L +LYG EF 
Sbjct: 276 FLAVK--LPENPSRCASIYQGLCIPKLFFEKFIEDPGQNWYLFKPEKSGNLANLYGDEFR 333

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578
                YER    G       I   +L   ++  + +TG P+I +K+ CN    +   G  
Sbjct: 334 ---SEYERLVGIGCYA--DAIPIKSLMFLIINTIIKTGSPYIIYKEACNEHHWKNMEGCA 388

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL---LAHFANNQ-------------------- 615
           + S+NLC E+ +     + + CNL ++ L   L   +N+                     
Sbjct: 389 IASANLCAEV-IQYPGADVSTCNLANVCLPMCLVTVSNDSHSPLEKTYCGNVIESQAVSG 447

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             F    L + +  AV +++  I      +    +     R++G+G+ G       +   
Sbjct: 448 VGFSMPILHAAVEVAVFLVNCAI-AGGKCVTPGMERGQRERSMGIGVHGLADVFAEMGYS 506

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVF---PIDSIGL 728
           Y    A  +  E  E + F A+  S  + +  G   +  +  S    G F     + + L
Sbjct: 507 YLDERAARLDVEIFENMYFRAVKTSNNICRLGGGRPFEGWGESKLRHGFFHWQGWEDVNL 566

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
              + +           W++L +R  + G+ NS  +A+ PT   + + G S+S  P + N
Sbjct: 567 SIPITE-----------WEKLSRRCISSGVYNSQFIALMPTVGSSLLTGFSESYYPYFAN 615

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-- 846
           +  K +   +    N    N + + DL      S         G++   P+ LK+ ++  
Sbjct: 616 ISSKVSSKEEVMKPNMTFWNRVSKEDLDTVRFFS---------GDVALFPEPLKEKYSLF 666

Query: 847 -TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTT-Y 901
            +AF+      +  A  R  ++DQ+QS + +L E    S + L  +    + +GLKT  Y
Sbjct: 667 LSAFDYCAEKQLARARLRAPFVDQSQSHSFHLKEENVVSARFLKDLILSGYTLGLKTIMY 726

Query: 902 YLRSRSATSV 911
           Y + +  +++
Sbjct: 727 YCKVKKQSTM 736


>gi|218673204|ref|ZP_03522873.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 442

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 209/470 (44%), Gaps = 74/470 (15%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    +PD+  +    N    LFSP +V  ++ +   E  +  +  
Sbjct: 1   KRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVYGVPFTEISVTEKYR 60

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  AD    K  +KI A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC
Sbjct: 61  EMVADARISK--KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI--AGRISMSNLC 116

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S + E               CNLGS+N+ A  A +  D+ K   TI T++R L 
Sbjct: 117 SEILQVSEASEYNEDLSYKHLGKDISCNLGSLNIAA--AMDSADFGK---TIETSIRALT 171

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D++   ++   +K N    AIGLG M     L    I Y S E V+  +     +++
Sbjct: 172 AVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTY 231

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRT 741
           HAI AS  LA ERG ++  F+ S +  G +          P  +   +  + D+  ++  
Sbjct: 232 HAIRASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKP--ATEKVQALFDKSGIHIP 289

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P                 
Sbjct: 290 TQEDWAALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHP----------------- 332

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER----IPDDLKKIHATAFEIDPMWLI 857
               +V++++ R              +G IG +      + +D    +  A+EI    +I
Sbjct: 333 ----IVSKIEIR-------------KEGKIGRVYYPAPFMTNDNLDYYQDAYEIGAEKII 375

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 376 DTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLR 425


>gi|82492130|gb|ABB77927.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 1061

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 159/671 (23%), Positives = 268/671 (39%), Gaps = 127/671 (18%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF   +     M ++PT+ N+G    QLS+CF+ +  DD+  I   + + A + +  GG+
Sbjct: 146 EFQANMEKLGVMPNSPTIMNAGDELQQLSACFVNSPGDDIRDIHDKVADAADVFQSGGGM 205

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G I F++  +     +  GGKR+GA    +   H D+ 
Sbjct: 206 GYAFHTLRPYGDVVGSTGGVASGPISFMRTFDQMCATIAAGGKRRGAQMGVMRVSHPDII 265

Query: 461 EFL-----------DLRKNTGDDRRRTH-------------------------------D 478
            F+            L+ N  DD                                    +
Sbjct: 266 HFIHAKNKDVSLKESLKLNDPDDFEHNSFSEALEEASELIDEDGQIPKHLRNAAEGHLSN 325

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM  +  +  +TL +P    + H    K  E+ Y  Y+ + D  E+    
Sbjct: 326 FNISVGVTDGFMDALFNDEEYTLINP-RTQEPHIATAKTEEM-YSWYDLE-DHVEVGEEL 382

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVGVV----------HSSNLC 585
            I A  LW +M+    E G P + + D  N       + H  +V          H++N C
Sbjct: 383 SIPATVLWERMIEGAHENGEPGVVYIDQINKDHSYDVESHCTIVDDDPMSQYEVHATNPC 442

Query: 586 TEITLNSSSEETAVCNLGSINL------------------------LAHFANN----QFD 617
            E  L     E   CNL  INL                        LA   +N      D
Sbjct: 443 GEQQLM----EGEACNLCHINLSTIVDQDAPDWRDWLDTHSDDYISLAECVDNYLEVALD 498

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y++L S I+T    L+NV+ ++   ++K +++   +R IGLG+MG       L + Y + 
Sbjct: 499 YEELDSRIQTGTHFLENVVTMSDFPLDKIEQTVADNRKIGLGIMGLAQMYIQLGVKYGTK 558

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E  EIA++ M+ I+  +   S ELAQ RG +++++ S +     P+D          E  
Sbjct: 559 EGNEIAEQVMKHINHGSKQVSHELAQRRGVFANWEDSKY---ASPLDY---------EEW 606

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             R +     E     K   +RN N   IAPT T + +   +   +P Y   Y K N+SG
Sbjct: 607 FERQTGESAAEYADGFK---IRNHNTTTIAPTGTTSMLGNTTGGCEPMYNVAYYK-NVSG 662

Query: 798 D------FTVVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIH 845
           D          + + +  L+  D+  +A+  + +        DG + ++E +P+ L ++ 
Sbjct: 663 DVQGDEMLVEFDDYFMRMLEANDVDADAVKQEAQELMQANEFDG-VDDLETVPERLTELF 721

Query: 846 ATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLD---EPSGKKLDFIYRQAWLMGLKTT 900
            T  ++            QK +D A  ++ N   D   E + +  ++IY+     G   T
Sbjct: 722 VTTADLSAHQHASVQCALQKGVDAAISKTTNAPHDSSLEDAKEVFEYIYKNG---GKGVT 778

Query: 901 YYLRSRSATSV 911
           YY     A  V
Sbjct: 779 YYRDGTRAKQV 789


>gi|260588433|ref|ZP_05854346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260541307|gb|EEX21876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 763

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 196/436 (44%), Gaps = 60/436 (13%)

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LS+C++   P+D +  IF   ++ A    Y GG G D + +   GA +  T  ++ G + 
Sbjct: 73  LSNCYVVEPPEDNIESIFDCAKKLARTYSYGGGCGVDISKLAPKGARVTNTAKETSGSVS 132

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+ + +     + Q G+R GA+   +   H D+EEF++++     D  +    N +  I 
Sbjct: 133 FMDLYSLVTGLIGQNGRR-GALMISIACDHPDLEEFIEIKS----DLDKVTKANISIRIT 187

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D FM  V                      K F +++   E     GE  + ++I A +++
Sbjct: 188 DKFMLAVKMR-------------------KPFVLSFTREET----GET-IRKEIDAYSVF 223

Query: 547 RKMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            K+  M ++   P + F D     N+ S  +       +N C E  L +       C LG
Sbjct: 224 HKLCEMNWDYAEPGMLFWDRIENWNLLSADKEFSYA-GTNPCAEEPLPAGGS----CLLG 278

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGL 660
           SINL      N+ F++     T+  AVR L+ V+D  +  H +++ ++S    R IGLG+
Sbjct: 279 SINLSEFVTENKTFNFTDFKKTVDIAVRALNIVLDEGLPLHPLKEQRESVRDWRQIGLGI 338

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G    L  + I Y SPE++++ D     +++ AI  S  +A E G+Y  +K     Q  
Sbjct: 339 FGLADLLIKIGIKYGSPESIDLCDMIGHAMAYQAIMTSNSIAIEVGSYPKYKPDAVKQSP 398

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  + I       DEL             ++ +  IG+ NS  + IAPT +++++ GVS 
Sbjct: 399 FFTEHI-------DEL------------YRENISEIGLCNSQLLTIAPTGSLSSMLGVSG 439

Query: 781 SIDPSYQNLYVKSNMS 796
            I+P Y N Y +   S
Sbjct: 440 GIEPVYANYYTRKTES 455


>gi|257865281|ref|ZP_05644934.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871609|ref|ZP_05651262.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257799215|gb|EEV28267.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805773|gb|EEV34595.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 825

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 201/444 (45%), Gaps = 63/444 (14%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C E  L 
Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 AVCNL +INL A+ A+ Q    D+ KL  T++TAVR  DNVID+  +  +K ++
Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFDKNEQ 529

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E+G++
Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   DQ     ++  L  +  D   M    ++P   +++ V   G+RNS+ + +AP
Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFIDTGYMK---KMP-AHIREGVLRFGIRNSHLLTVAP 639

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P Y   Y +S   G F  +N+ +V+E     L D           
Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEY----LMDHP--------- 686

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885
                 ER   +L     +A E+ P   +      Q+W+D   S++  ++ P G    ++
Sbjct: 687 ------ERTKAELPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYTVSQV 738

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA-------VPVTDPNSSTH 936
             +YR  +  G K  T Y   SR +  +   TL+ V+ +L A       V V +P +S  
Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLSVVQVDEPVASGE 795

Query: 937 SLGIP--------SSCTSDTECEV 952
              I           C++ T C++
Sbjct: 796 ICPICHEGTIEEIGGCSTCTNCKI 819



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365
           S IE P   F      RVA G++  E+  ++R  E FY  + + + + +   L+ +GT +
Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANESHDQERFFEAFYQQIVAQNLIPAGRVLYGAGT-N 172

Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            Q++  +CF+   + D   GI    QE   +    GG+G + + +R   + +HG +G+S 
Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           G + +L    +    V QGG R+GA    +  WH D+  F+
Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFI 273


>gi|125860265|ref|YP_001036435.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
 gi|120969410|gb|ABM45853.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
          Length = 839

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 151/634 (23%), Positives = 259/634 (40%), Gaps = 104/634 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L+++RD+          YD        + +E  Q  FMRVA+ +   + +K    +E Y+
Sbjct: 251 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 298

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G + 
Sbjct: 299 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 358

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                V                 +  L V N+    +    K       ++E WH +V+ 
Sbjct: 359 LYMQNVS----------------VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 402

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE A
Sbjct: 403 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 459

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577
           Y  +E++    +I     + A  L + ++  +   G+  + FKD  N    I   Q    
Sbjct: 460 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 514

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           +V S+++  +  +N  ++                   QFDY+ L    +  VR LD +I+
Sbjct: 515 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 555

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + ++K +   H    I +G+ GF   L LL   +   EA  +     E I + AI A
Sbjct: 556 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 612

Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           S ELA+      E G   S++     Q ++ +               N T    W  L +
Sbjct: 613 SNELAEASKELNESGKNKSYRNEKITQQIYNV------------YTDNETLMWDWQSLHE 660

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V+  G+++   ++     T   I G   +  P    LY    ++     +   LV  L 
Sbjct: 661 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 715

Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867
             +L    +I S L   +GS+ N + IPD +KK+     E D     ++IE++     +I
Sbjct: 716 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 771

Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898
           DQ Q L L+         D IY    +AW   LK
Sbjct: 772 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 800


>gi|94984359|ref|YP_603723.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
 gi|94554640|gb|ABF44554.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
          Length = 1010

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 149/612 (24%), Positives = 250/612 (40%), Gaps = 128/612 (20%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428
           +  VPDD+ GI  A +  A  AK       D + +R  GA I G+ G S G + FL    
Sbjct: 212 VQAVPDDMGGIIDAARAVAESAKVGVEPRIDLSQMRPEGAPIKGSGGTSSGPVSFLMEIF 271

Query: 429 -------KVANDTAVAVN--------------QGGKRKGAVCAYLETWHIDVEEFL---D 464
                      +T+  +N              QGG R+GA  A +   H DV +FL   D
Sbjct: 272 DNFLEWANRGGETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATIAIEHPDVLDFLTAKD 331

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF----EI 520
           L +   +    T   N +  + + F + +  +A W +       D+ ++ GK +      
Sbjct: 332 LDREAAEGDIST--FNISILVSEQFWQALEGDALWHV-------DVQEVPGKYYLAPQSG 382

Query: 521 AYENY-----ERQAD--RGEIKVFRK--------------ISAVALWRKMLTMLFETGHP 559
            Y+ +     ER  D  RG + ++R               + A  LW ++    + TG P
Sbjct: 383 PYDGHLPTLPERAEDGARG-VPLYRGAPRGRSQPADARPGVPAKWLWDQIAEHAWATGEP 441

Query: 560 WITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            + F D  N  S  +++G    + S+N C EI L         C+LG+INL A+  N++F
Sbjct: 442 GLIFVDRVNEHSALKNLGKRYEIRSTNPCGEIPLTVGEP----CDLGAINLAAYVQNSRF 497

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+    + +RT VR LD+V+D+N   +E  + ++   R +GLG+MG   AL  L + Y S
Sbjct: 498 DFAAFRADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKLGLRYDS 557

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
                   E M  +   A++ S  L QERG Y  ++                    R+  
Sbjct: 558 EAGRAAIAEIMTALREEAVAESERLGQERGVYPVYE--------------------RNAQ 597

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +  + R               RN   + +APT T + + GVS  I+P + + ++   + 
Sbjct: 598 KIPHSPR---------------RNVAVLTVAPTGTTSMLMGVSSGIEPVF-SPFIWRKIG 641

Query: 797 GDFTVVNSFLVNELKQRDL-------------WDEAMISDLKYHDGSIGNIERIPDDLKK 843
            ++  +   L  EL  +               WD    +  + H GS+  +  IP+ L++
Sbjct: 642 AEYRALLHPLFMELLNQYPPAANMDDGQGGWNWDRVTEAVSENH-GSVVGLAFIPEALQQ 700

Query: 844 IHATAFEIDPMWLIESASRRQKWID-----QAQSLNLYLDEPSGKKLDFI---YRQAWLM 895
           +   A +I P+  +      Q+  D      A SL+  ++ P+   +  +   Y +A+  
Sbjct: 701 VFVCAHDIKPLDHVRMQGVVQQAFDAGGQHAANSLSKTINLPNSATVADVRAAYAEAYRT 760

Query: 896 GLKTTYYLRSRS 907
           G K     R  S
Sbjct: 761 GCKGITVYRDGS 772


>gi|319997477|gb|ADV91375.1| rr1 [Spodoptera frugiperda MNPV]
          Length = 838

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 151/634 (23%), Positives = 261/634 (41%), Gaps = 104/634 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L+++RD+          YD        + +E  Q  FMRVA+ +   + +K    +E Y+
Sbjct: 250 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 297

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G + 
Sbjct: 298 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 357

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                       ++  N      +  L V N+    +    K       ++E WH +V+ 
Sbjct: 358 ------------LYMQNVS----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 401

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE A
Sbjct: 402 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 458

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577
           Y  +E++    +I     + A  L + ++  +   G+  + FKD  N    I   Q    
Sbjct: 459 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 513

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           +V S+++  +  +N  ++                   QFDY+ L    +  VR LD +I+
Sbjct: 514 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 554

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + ++K +   H    I +G+ GF   L LL   +   EA  +     E I + AI A
Sbjct: 555 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 611

Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           S ELA+      E G   S++     Q ++ +               N T    W  L +
Sbjct: 612 SNELAEASKELNESGKKKSYRNEKITQQIYNV------------YTDNETLMWDWQSLHE 659

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V+  G+++   ++     T   I G   +  P    LY    ++     +   LV  L 
Sbjct: 660 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 714

Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867
             +L    +I S L   +GS+ N + IPD +KK+     E D     ++IE++     +I
Sbjct: 715 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 770

Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898
           DQ Q L L+         D IY    +AW   LK
Sbjct: 771 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 799


>gi|189462576|ref|ZP_03011361.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
 gi|189430737|gb|EDU99721.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
          Length = 847

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 150/628 (23%), Positives = 267/628 (42%), Gaps = 105/628 (16%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394
           E + L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L 
Sbjct: 73  ELFGLFDHFKYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGKADSYGAIIRIDEEQVQLM 132

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 191

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  + D FM+   +N  +T              
Sbjct: 192 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVENRTYT-------------- 233

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            ++F I         D  + +V ++I+A ALW+K++   +++  P + F D     S P 
Sbjct: 234 -QQFPI---------DSNDPQVKKEINASALWKKIVHNAWKSAEPGVLFWDTILRESVPD 283

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  +     S+N C EI L         C L +INL ++  N       FD++     +
Sbjct: 284 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTPEAYFDFELFKKHV 339

Query: 626 RTAVRVLDNVIDINCHTIEKAK------------KSNHTH------------RAIGLGLM 661
             A R++D++ID+    IEK              K    H            R  G+G+ 
Sbjct: 340 GLAQRIMDDIIDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYRKSGLGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  + + Y + EA E +++  + I+  A  +SV +A+ERGA+  +  +       
Sbjct: 400 AEGDMLAAMGLRYGTEEATEFSEKVHKTIAIEAYRSSVNMAKERGAFEIYDAA------- 452

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    EV +   +NR       EL + +K  G RN  C+ IAPT T + +   +  
Sbjct: 453 --------REVNNPF-INRIKDAD-PELYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSG 502

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832
           I+P +  +Y  +  ++ +   V+   V+E    D ++E ++   K+        +D    
Sbjct: 503 IEPVFMPVYKRRRKVNPNDANVHVDFVDETG--DAFEEYVVFHHKFLTWMQINGYDPDKH 560

Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
             +   DDL        AT+ ++D +  ++   R QKW+D + S+ + L     ++L + 
Sbjct: 561 YTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNSVDEELVNR 620

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +Y +AW  G K     R  S   V  ST
Sbjct: 621 LYVEAWRSGCKGCTVYRDGSRAGVLVST 648


>gi|257052366|ref|YP_003130199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
 gi|256691129|gb|ACV11466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
          Length = 1039

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 187/466 (40%), Gaps = 103/466 (22%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E+ A EF +L+ +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EETATEFQDLMENLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFL-----------DLRKNTGDDRRRT---------------------------- 476
           H DV +F+            LR N  DD   T                            
Sbjct: 262 HPDVIQFIHAKNKDVSLARTLRLNDPDDFTHTSFSDALEEARELIDDDGRVPEHLRNAVE 321

Query: 477 ---HDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524
               + N +  I D FM  +  +  +T  +P          E  +L+D++G         
Sbjct: 322 GHLSNFNISVGITDEFMDALQNDEEFTFTNPRTGDPHIVTAETKELYDMFGL-------- 373

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN------IRSPQQHVGV 578
                +  E+     I A  LW  ++    E G P + + +  N      +     H   
Sbjct: 374 ----GEYVEVGEELSIPASELWDDIVEGAHENGEPGVIYLERANKEHSFDVEENSDH--R 427

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAH 610
           + ++N C E  L    EE   CNLG INL                            +  
Sbjct: 428 ILATNPCGEQPL----EEYEACNLGHINLSTLAAEGAPDWRVWSERHADDYDDFEAAVEA 483

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           + +   D ++L   I  A R L+NV+ ++   +EK ++     R IGLG+MG       L
Sbjct: 484 YLDEAIDVEELEYRIEMATRFLENVVTMSDFPVEKIEEKVRDMRKIGLGIMGLAQLFIQL 543

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            + Y S E   IA   M+ I+  +  AS ELA+ERG ++ ++ S +
Sbjct: 544 GVKYGSDEGDAIAGHLMQKINHDSKWASHELAEERGVFNDWEDSKY 589


>gi|228471291|ref|ZP_04056097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
 gi|228306933|gb|EEK16031.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
          Length = 857

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 164/704 (23%), Positives = 290/704 (41%), Gaps = 119/704 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + +    FD  Y A  L Y   F  + L  ++   +Y L  +   I  + P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LDY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+R GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  
Sbjct: 177 AQDGRR-GALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVED-- 229

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                            KE+   Y  +       E K  R I A  LW K++   + +  
Sbjct: 230 -----------------KEYLQTYPVHS-----AEPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S P  +  +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A+R++D++ID+    I+                        K
Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K+     R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ER
Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  +A+   +L         ++E+KK     G RN   + 
Sbjct: 444 GAFDLYDTEREKDNPF----IQRIAKADPKL---------YEEMKK----FGRRNIAMLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFTVVNSFLVNELKQRDLWD 817
           IAPT + + +   S  I+P +  +Y +         N+  D+T       +  ++  ++ 
Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETG---DTFEEYTVYH 543

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQA 870
              ++ +K  +G         ++L+++        ATA ++D +  ++   R Q+W+D +
Sbjct: 544 HNFLTWMKI-NGYDPEKNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHS 602

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV 911
            S+ + L  + S + +  +Y +AW  G K  T Y   SRS   +
Sbjct: 603 ISVTINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLI 646


>gi|303235869|ref|ZP_07322472.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
 gi|302483742|gb|EFL46734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
          Length = 865

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 168/698 (24%), Positives = 298/698 (42%), Gaps = 115/698 (16%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           FD  + A+ L+Y   F  + L  ++  ++Y +  +  +I  + P+    R+A  +A  E 
Sbjct: 9   FDEAFEAS-LRY---FNGDELAARVWVNKYAMKDSFGKIYEKSPEDMHWRIANEVARIEK 64

Query: 334 EKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFG 385
           + +    A E ++LL  F ++    + +   G  H    LS+CF+  +  D   YG I  
Sbjct: 65  KYKNPISAQEVFDLLDHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGDADSYGAILR 124

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R 
Sbjct: 125 IDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  I D FM+    +  +    P 
Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDSFMEAAVNDKEFVQQFP- 238

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            +   H  + KE                      ISA  LW K++   +++  P I F D
Sbjct: 239 -IDSAHPTFKKE----------------------ISAKKLWDKIVHNAWKSAEPGILFWD 275

Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  +     S+N C EI L         C L SINL ++  +       F
Sbjct: 276 TITRESLPDCYADLGFRTISTNPCGEIPLCPYDS----CRLLSINLYSYVKHPFTKEATF 331

Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652
           D+D     ++ A R++D+++D+                          H  EK K  +  
Sbjct: 332 DFDLFKKHVQLAQRIMDDIVDLEMEKIDLIMEKVKDDPQNDEVKLAEYHLWEKIKDKSGK 391

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  G+G+      +  + + Y + EA   + E  + ++  A  +SV +AQERGA+S F 
Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTEEATAFSVEVHKTLALCAYRSSVTMAQERGAFSIFD 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                +  F      LL     E A+       +D++ K     G RN  C+ IAPT T 
Sbjct: 452 AKREAENPF------LLRIKEAEPAL-------YDDMIK----YGRRNIACLTIAPTGTT 494

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + +   +  I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+ +   
Sbjct: 495 SLMTQTTSGIEPVFMPVYTRRRKVNPNDTGVHIDFVDEVG--DSFEEYIVYHKKFIEWMK 552

Query: 832 GN---------IERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
            N          E I + +K+     ATA ++D +  ++     QKW+D + S+ + L  
Sbjct: 553 VNGLDTEKKYTQEEINELVKRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPN 612

Query: 880 PSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914
              + L + +Y +AW  G K  T Y   SRS   +  S
Sbjct: 613 NVDEVLVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVS 650


>gi|332883039|gb|EGK03323.1| hypothetical protein HMPREF9456_01960 [Dysgonomonas mossii DSM
           22836]
          Length = 847

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 163/703 (23%), Positives = 284/703 (40%), Gaps = 119/703 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + + +  FD  Y A  L Y   F  + L  ++  ++Y L      I  + P+    R+A 
Sbjct: 1   MAQKVYTFDEAYRAA-LDY---FNGDELAAKVWVNKYALKDATGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEKRAV---EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTV--PD 378
            +   E+ K K  +   E Y+L   F ++    S  T   +  +   LS+CF+  +    
Sbjct: 57  EIGRIES-KYKNGLTTQELYDLFDQFKYIVPQGSPMTGIGNDYQIASLSNCFVIGMEGSS 115

Query: 379 DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D YG I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   
Sbjct: 116 DSYGAIIRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 175

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G+R GA+   +   H D E F+D +   G    +    N +  I D FM+ V    
Sbjct: 176 VAQDGRR-GALMLSVSIKHPDSESFIDAKMIEG----KVTGANVSVRIDDAFMQAVVDGT 230

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +T   P                         D       +   A  LW+K++   +++ 
Sbjct: 231 PYTQQYP------------------------IDSDNPTTVKDTDATELWKKIVHNAWKSA 266

Query: 558 HPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            P + F D     S P  +  +     S+N C EI L         C L +INL ++  N
Sbjct: 267 EPGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVVN 322

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIE 644
                  FD++     +  A R++D++ID+                          H  E
Sbjct: 323 PFKEDAYFDFELFKKHVGLAQRIMDDIIDLETEKIDKILNKIEIDPENEEVKWPERHLWE 382

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K +K     R  G+G+      +  + + Y + EA   A+E    ++  A  ASVELA+E
Sbjct: 383 KIRKKTLQGRRTGVGITAEGDMIAAMGLRYGTEEATTFAEEVHRTLAVAAYRASVELAKE 442

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+  F                 +   R+   +NR + +   +L K ++  G RN  C+
Sbjct: 443 RGAFEIFD----------------IERERNNPFINRLAEVD-PKLYKDMEKYGRRNIACL 485

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT T + +   +  I+P +  +Y  +  ++ +   V    V+E    D W+E ++  
Sbjct: 486 TVAPTGTTSLMTQSTSGIEPVFLPVYKRRRKVNPNDKEVRVDFVDE--NGDSWEEYVVFH 543

Query: 824 LKY-----HDGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQ 871
            K+       G         +++ K+        AT+ ++D +  ++   R QKW+D + 
Sbjct: 544 HKFVTWMESKGYPAAKRYTNEEIDKMIAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSI 603

Query: 872 SLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSATSV 911
           S+ + L  PS    D +   Y +AW  G K     R  S   V
Sbjct: 604 SVTINL--PSDVSEDLVNQLYIEAWKSGCKGCTVYRDGSRAGV 644


>gi|15790595|ref|NP_280419.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|169236332|ref|YP_001689532.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581113|gb|AAG19899.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727398|emb|CAP14186.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 1051

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 161/693 (23%), Positives = 273/693 (39%), Gaps = 129/693 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A EF +L++S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 141 EGVAAEFQDLMASLSFMPNSPTLMNAGDELQQLSACFVDSPDDDITDIHQTAKEAAEVFQ 200

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G + F++  +     + QGG R+GA  A +   
Sbjct: 201 SGGGMGYAFWQLRPYGDTVGSTGGIASGPLTFMETFDQMCETIAQGGARRGAQMAVMRVS 260

Query: 456 HIDVEEFL-----------DLRKNTGDDRRRTH--------------------------- 477
           H DV EF+            L+ N  DD   T                            
Sbjct: 261 HPDVVEFIHAKNKDVSLAQTLKLNDPDDYTYTEFSEALEEARDLIDEDGRVPEHLRNAVE 320

Query: 478 ----DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  + D FM+ +     +T  +P            E  IA E  +    R  
Sbjct: 321 GHLSNFNISVGVTDGFMEALEAGEEYTFTNP---------RTGEAHIATEETKEMYSRYG 371

Query: 534 IKVF------RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG-VVHSSN 583
           +  +        + A  LW +++    E G P + + +  N       ++H    + ++N
Sbjct: 372 LGHYVTPGEELTLPAEELWSRIVEGAHENGEPGVIYLERVNDEHSFDVEEHPDHRILATN 431

Query: 584 LCTEITLNSSSEETAVCNLGSINL--------------------------LAHFANNQFD 617
            C E  L    EE   CNLG INL                          ++ F +   D
Sbjct: 432 PCGEQPL----EEYEACNLGHINLSTLAAQDAPDWRVWSQTHDFDTLEAGVSRFLDEAMD 487

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D     I    R L+NV+ ++   + + ++     R IGLG+MG       L + Y S 
Sbjct: 488 TDAFQRRIEMGTRFLENVVTMSDFPVPEIEQKVSEMRKIGLGVMGLAQLYIQLGVKYGSE 547

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDE 735
           E  EIA + M+ I+  + +AS ELA ERG++       WD   F  P +          E
Sbjct: 548 EGNEIASQLMQTINHDSKTASHELALERGSFDE-----WDNSKFAAPTEYADWFEHHTGE 602

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-- 793
            A +     P            +RN N   IAPT T + +   +   +P Y   Y K+  
Sbjct: 603 DAADWADGYP------------IRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVS 650

Query: 794 -NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDLKKI 844
            ++ GD  +V  + + +  L+  D+  +A+  + +        DG +  +  +PD + ++
Sbjct: 651 DDVQGDEMLVEFDDYFLRTLEDNDIDVQAVKEEAQTQMANNDFDG-VDGLTTVPDAIGEL 709

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTY 901
                ++         +  Q  +D A S    + ++ S + +D +YR  +  G K  T Y
Sbjct: 710 FVVTSDLSGKDHAAVQTACQNGVDSAISKTCNFPNDASVEDMDEVYRYIYDNGGKGVTVY 769

Query: 902 YLRSRS----ATSVEKSTLKGVDGKLNAVPVTD 930
              +RS     T  + +   G+D +  A  + D
Sbjct: 770 RDGTRSKQVLTTRADNTEFSGLDEEEAAAAMVD 802


>gi|325066267|ref|ZP_08124940.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           oris K20]
          Length = 393

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           Y   F FE +LG    Y  Y L   +G R    + F  RV M         E+ A++  +
Sbjct: 97  YAHKFRFETFLGAFKYYTSYTLKTFDGKR--YLERFEDRVTMVALTLANGVERLALDLVD 154

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+   
Sbjct: 155 EMMSGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALL 214

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FL
Sbjct: 215 LSNLREMGAPIKRIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFL 274

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   +  +  E
Sbjct: 275 DTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGMPFADINVT-E 333

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y    D G IK  +KI+A   ++ +  + FE+G+P++ F+D  N  +P +  G V  SN
Sbjct: 334 KYREMVDDGRIKK-KKINARTFFQTLAEIQFESGYPYVMFEDTVNKANPIK--GKVVMSN 390

Query: 584 LCT 586
           LC+
Sbjct: 391 LCS 393


>gi|330720411|gb|EGG98732.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [gamma proteobacterium IMCC2047]
          Length = 715

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 157/662 (23%), Positives = 276/662 (41%), Gaps = 68/662 (10%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +D   +   L I   +Y L   NG  ++    A F RVA  LA  ET K+ +   +   L
Sbjct: 13  KDIPLQDASLDIWDKKYRLKAKNGEAVDTDVDATFRRVARALADVETGKKNQEKWYEKFL 72

Query: 347 SSFH--FMCSTPTLFNSGTR-HPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSGG 399
            +     + +   + N+G + H   +S    TV     D +  I     E  +  K   G
Sbjct: 73  WALRKGVIPAGRIISNAGAKEHKPATSTINCTVSAVIHDSMTDILTKNLEAGLTLKAGCG 132

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV
Sbjct: 133 IGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDV 192

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYG 515
            EF+  ++  G    R    N +  I D F++ V   A W L  P    ++     DL G
Sbjct: 193 FEFIRAKREDG----RLRQFNLSLLITDEFIQAVKDQADWQLAFPVTAKEVENDGIDLEG 248

Query: 516 KEF----EIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +         E+Y    D G +  +V++ + A  +W  +++  ++   P     D  N 
Sbjct: 249 DDIIWRESPNSEDYVHN-DEGLVACRVYKTVKAQRVWDAIMSSTYDFAEPGFILIDKVNE 307

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLAST 624
            +       + ++N C E  L         C LGS+NL          N +FD+D+    
Sbjct: 308 MNNNWFCEQIRATNPCGEQPLPPYGS----CLLGSVNLTRFVVDPFTPNARFDWDEYRKV 363

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +    R+LDNV++IN   +E+ +      R  G+G +G  S   +L + Y    ++E+ +
Sbjct: 364 VSIFTRMLDNVVEINGLPLEQQRHEIQNKRRHGMGYLGLGSTTTMLGLKYGDEASLELTE 423

Query: 685 ESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
              + ++      ++ELA+E+GA       +      L  +     D   +  +V  ++ 
Sbjct: 424 RVTKEMAMVGWETALELAEEKGAAPIMDEMFEVTPCMLRKRPEMAKDGYKVGDQVAGKVL 483

Query: 738 MNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDPSYQ 787
             + SR          EL +++   G R ++  +IAPT TI    AN    S  I+PS+ 
Sbjct: 484 HAKYSRYMQQVAQENPELVEKLAEKGARFTHHTSIAPTGTISLSLAN--NASNGIEPSFA 541

Query: 788 NLYVKSNM-SGDFT--VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           + Y ++ +  G  T   V+ F    L  R+L           +  ++   E   + L + 
Sbjct: 542 HHYSRNVIREGRKTKEKVDVFSYELLAYREL----------VNPKAMPYSENPEEQLPEY 591

Query: 845 HATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
             +A +I P   ++  +  QKWID   +++ N+  D P     D IY  A+  GLK    
Sbjct: 592 FISADDIKPKQHVDVQAASQKWIDSSISKTANVPTDFPYQDFKD-IYMYAYEQGLKGCTT 650

Query: 903 LR 904
            R
Sbjct: 651 FR 652


>gi|304310470|ref|YP_003810068.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
 gi|301796203|emb|CBL44409.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
          Length = 704

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 139/571 (24%), Positives = 246/571 (43%), Gaps = 66/571 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I     E  +  K   G+G +++ +R  GA++ G   K+ G + F+ + + T
Sbjct: 96  TIHDTMNDILAKNFEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAKTSGPLSFMDIFDRT 155

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+ +++  G    R    N +  + + F+  V 
Sbjct: 156 CFTVSSAGGRRGAQMATFDVSHPDVLDFIRVKRENG----RLRQFNLSLLVSEKFIDAVR 211

Query: 495 QNAGWTLF------SPD-EVSDLHDLYGKEF-EIAYENYERQADRGEI--KVFRKISAVA 544
            +  W L       SPD +  +L D    E+ E    +     D GE+  +V+RK++A  
Sbjct: 212 NDQQWALVFPIKTNSPDAQKLNLQDPEQVEWREWPSNDGYITNDCGEVACRVYRKVAARK 271

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  +++  ++   P     D  N  +       + ++N C E  L         C LGS
Sbjct: 272 IWHVIMSSTYDFAEPGFILIDKVNQMNNNWFCENIRATNPCGEQPLPPYGS----CLLGS 327

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           INL    +N      QFD++K    +    R+LDNV+++N   +          R  G+G
Sbjct: 328 INLTRFISNPFSVDAQFDWEKFRRMVSVFSRLLDNVVEVNGLPLNHQAHEIQYKRRHGMG 387

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG------------- 706
            +G  SA+ +L I Y S E+VE  ++    ++      ++ELA+E+G             
Sbjct: 388 FLGLGSAMTMLRIKYGSKESVEFTEQIAREMAMTGWKTALELAKEKGPAPIMEDEFEVTP 447

Query: 707 AYSSFKGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSN 762
           +  S +  +   G    D I G +   +    M R +       DEL K    +G R ++
Sbjct: 448 SMLSKRPEMVADGYRVGDKIKGKVLHAKYSRYMQRIAEQDPALVDELAK----VGARYTH 503

Query: 763 CMAIAPTATIANICG--VSQSIDPSYQNLYVKS-----NMSGDFTVVNSFLVNELKQRDL 815
             +IAPT TI+   G   S  I+P++ + Y+++       S +   V SF        +L
Sbjct: 504 HSSIAPTGTISLSIGNNASNGIEPTFAHHYIRNVIKEGKKSKEKMDVFSF--------EL 555

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSL 873
                + + K    S    E++PD       +  ++ P   ++  +  QKW+D   ++++
Sbjct: 556 LAYRALVNPKAMPFSENPAEKLPD----YFTSTDDVSPEQHVDIQAAAQKWVDSSISKTI 611

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           N+  D  S  +   IY  A+  GLK     R
Sbjct: 612 NVPTD-ISYDRFKDIYLYAYDSGLKGCTTFR 641


>gi|146280505|ref|YP_001170658.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
 gi|145568710|gb|ABP77816.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
          Length = 745

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 237/569 (41%), Gaps = 54/569 (9%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           ++ D +  I G + E  +  K   G+G +++ +R  G+ + G    + G + F+ + +  
Sbjct: 139 SITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKM 198

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 199 CFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQTVE 254

Query: 495 QNAGWTLFSPD--------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +  W L  P         +++D   +  +E+ +      R       K++ ++ A  LW
Sbjct: 255 ADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYIVRDDGLVACKIYGRVKARHLW 314

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   ++   P     D  N  +       + ++N C E  L         C LGSIN
Sbjct: 315 DMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSIN 370

Query: 607 LLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L  HF         +FD+DK    +R   R+LDNV++IN   +E+ +    + R  G+G 
Sbjct: 371 L-THFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEINGLPLEQQRHEIESKRRHGMGF 429

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--------- 711
           +G  S L LL + Y SPEA    +E    ++      ++EL++E+G              
Sbjct: 430 LGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALELSKEKGPAPLLSQNFEVTAE 489

Query: 712 ----KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
               +  +   G    D I G +   +    M + +    D L + +   G R ++  +I
Sbjct: 490 MLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAPD-LIEALAEQGARFTHHSSI 548

Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           APT TI    AN    S  I+PS+ + Y ++ +             E+   +L     + 
Sbjct: 549 APTGTISLSLAN--NASNGIEPSFAHHYSRNLIRPGRKAKEKI---EVFSYELLAYRTLI 603

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEP 880
           + +   GS    E++PD       TA ++ P   ++  +  QKW+D   +++ N+  D P
Sbjct: 604 NARAKPGSDEPGEKLPD----YFITADDVSPTQHVDIQAAAQKWVDSSISKTANVPTDYP 659

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
                D IYR AW  GLK     R   A 
Sbjct: 660 FEAFKD-IYRYAWRQGLKGCTTFRFNPAA 687


>gi|145300302|ref|YP_001143143.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853074|gb|ABO91395.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 715

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 154/628 (24%), Positives = 259/628 (41%), Gaps = 68/628 (10%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLT-TV 376
           + RVA  LA +E E +     F   L +        T       H   +S   C ++ T+
Sbjct: 49  YQRVARALAEQEREPDAWYEPFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGTI 108

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D +  I G + E  +  K   G+G D++ +R  GA + G    + G + F+ + +    
Sbjct: 109 EDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCF 168

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+  G R+GA    ++  H DV EF+  ++  G    R    N +  I + F+K V ++
Sbjct: 169 TVSSAGGRRGAQMGTMDIRHPDVIEFIQAKREDG----RLRQFNLSLLITEDFVKAVKED 224

Query: 497 AGWTLFSPDEVSDL-HDLYGKE-----FEIAYENYERQADR--GEI--KVFRKISAVALW 546
           A W+L  P    ++  D  G +     F   + N E       G++  KV++ + A  LW
Sbjct: 225 APWSLIFPYTAKEVEQDGIGLDDPEVVFWADWPNKEGVVINALGQVACKVYKTMPARKLW 284

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++T  ++   P     D  N  +       + ++N C E  L         C LGS+N
Sbjct: 285 NVIMTSTYDYAEPGFILIDKVNQMNNNWFCEEIRATNPCGEQPL----PPYGACLLGSVN 340

Query: 607 LLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L  F  +       FD+      +    R+LDNV++IN   + K ++     R  G+G 
Sbjct: 341 -LTRFVRDPFTEQAAFDWQGFRKVVAIFTRMLDNVVEINQLPLAKQREEITAKRRHGMGF 399

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           +G  S L +L I Y S  +V   ++  + ++      S+ LA+E+G     +      G 
Sbjct: 400 LGLGSTLTMLQIKYGSAASVAFTEQVSQELAMTGWQESLRLAKEKGVAPIMEQEFEVTGK 459

Query: 721 -------FPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIA 767
                     D I L  +V+ ++   R SR           L   +  +G R ++  +IA
Sbjct: 460 MLRLHPEMAADGIKLGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIA 519

Query: 768 PTATI----ANICGVSQSIDPSYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDE 818
           PT TI    AN    S  I+PS+ + Y ++ +     S +   V SF +  L  R+L   
Sbjct: 520 PTGTISLSLAN--NASNGIEPSFAHHYSRNVIKPGKKSKESVDVYSFEL--LAYREL--- 572

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLY 876
                   + G++   E     L     TA +I P   ++  +  Q+WID   +++ N+ 
Sbjct: 573 -------VNAGAMPYSEDDASRLPGYFITADDISPAQHVDIQAAAQRWIDSSISKTANVP 625

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            D P  +  D IY  A   GLK     R
Sbjct: 626 TDFPFEQFKD-IYMYASDSGLKGCTTFR 652


>gi|224027035|ref|ZP_03645401.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
 gi|224020271|gb|EEF78269.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
          Length = 847

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 160/704 (22%), Positives = 297/704 (42%), Gaps = 113/704 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAM 326
           + +    +D  Y A+ L+Y   F  + L  ++  ++Y +  +   I  + P+    R+A 
Sbjct: 1   MEKKTYSYDEAYNAS-LQY---FKGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--D 379
            +A  E +      A E ++LL  F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EVARIEAKYPNALSAQELFDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGLEGAAD 116

Query: 380 LYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            YG I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+R GA+   +   H D E F+D +   G    +    N +  + D FM+   +   
Sbjct: 177 AQDGRR-GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVEGR- 230

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                         +Y ++F I         D     V ++I+A ALW+K++   +++  
Sbjct: 231 --------------MYTQQFPI---------DSDHPMVSKQINASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S P  +  +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVINP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEK 645
                +FD+D     I  A R++D++ID+                          H  EK
Sbjct: 324 FTPEARFDFDLFKKHIALAQRIMDDIIDLELEKIERIMEKIDADPESEEVKGAERHLWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + +   R  G+G+      L  + + Y + EA E +++  + ++  A  +SV +A+ER
Sbjct: 384 IYRKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTVALEAYRSSVNMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F       +  ++D              L + +   G RN  C+ 
Sbjct: 444 GAFEIYDAEREKNNPF-------INRIKDADPA----------LYEDMVRYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T + +   +  I+P +  +Y+ +  ++ +   V+   V+E    D ++E ++   
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFMPVYMRRRKVNPNDANVHVDFVDETG--DAFEEYVVFHH 544

Query: 825 KY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           K+        +D +    +   DDL        AT+ ++D +  ++   R QKW+D + S
Sbjct: 545 KFLTWMEVNGYDPNKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSIS 604

Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + + L     ++L + +Y +AW  G K     R  S   V  ST
Sbjct: 605 VTINLPNSVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGVLIST 648


>gi|302347121|ref|YP_003815419.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
 gi|302150496|gb|ADK96757.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
          Length = 866

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 174/722 (24%), Positives = 305/722 (42%), Gaps = 121/722 (16%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           FD  + A+ L Y   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E 
Sbjct: 9   FDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIANEIARIEN 64

Query: 334 EKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFG 385
           + +    A E ++LL  F ++    S  T   +  +   LS+CF+  +    D YG I  
Sbjct: 65  KYKNPLTAQEVFDLLHHFKYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNADSYGAIMR 124

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   V Q G+R 
Sbjct: 125 IDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR- 183

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  +    P 
Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDKTYVQQFPT 239

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             S                        E  V ++ISA  LW K++   +++  P + F D
Sbjct: 240 NSS------------------------EPSVTKEISAKELWEKIVHNAWKSAEPGVLFWD 275

Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  +     S+N C EI L         C L S+NL ++  +      +F
Sbjct: 276 TIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARF 331

Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652
           D +      + A R++D++ID+                          H  EK KK +  
Sbjct: 332 DMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKKKSCQ 391

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+  + 
Sbjct: 392 GRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAFEIYD 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
               ++  F    I  L E   +L         ++++KK     G RN  C+ IAPT T 
Sbjct: 452 AKREEKNPF----ILRLKEADGQL---------YEDMKK----YGRRNIACLTIAPTGTT 494

Query: 773 ANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--WDE-- 818
           + +   +  I+P +  +Y +        +++  DF   V +SF    +  R    W E  
Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEVN 554

Query: 819 AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            + +  KY    I   ++R P       ATA ++D +  +      QKW+D + S+ + L
Sbjct: 555 GIDTQKKYSQEEIDELVKRSP----YYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNL 610

Query: 878 DEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVPVTDPN 932
                ++L + +Y +AW  G K  T Y   SRS    SV K      +  ++   V D N
Sbjct: 611 PNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDLN 670

Query: 933 SS 934
           S+
Sbjct: 671 SA 672


>gi|326333208|ref|ZP_08199455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
 gi|325948852|gb|EGD40945.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
          Length = 976

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 142/593 (23%), Positives = 255/593 (43%), Gaps = 63/593 (10%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL + HF  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G +
Sbjct: 128 LLVNQHFAFNSPVWFNVGTESPQQVSACFILSVDDSMDSILNWYKEEGLIFKGGSGAGLN 187

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 188 LSRIRSSKELLKSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEF 247

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518
           ++ +    D  R   D   A +  DL  K ++    QNA  ++   DE     +  GK+F
Sbjct: 248 VETKAREEDKIRALRD---AGFDMDLGGKDISSVQYQNANNSVRVSDEFMRAVE-EGKKF 303

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +      R    GE  V  +I A  L+RK+    +E   P + + D  N        G 
Sbjct: 304 GL------RARTTGE--VIEEIDARELFRKISIAAWECADPGLQYDDTINDWHTNPETGR 355

Query: 579 VHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVI 636
           +  SN C+E ++L++SS     CNL S+NLL    ++  FD  +           +D  I
Sbjct: 356 ITGSNPCSEYMSLDNSS-----CNLASLNLLKFLKDDDTFDAVRFQQACEIVFTAMDISI 410

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  E   ++   +R +G+G     + L  + + Y S     +A      ++     
Sbjct: 411 CFADFPTEAIGETTRDYRQLGIGYANLGALLMAMGLGYDSEGGRTMAAAITSLMTGAGYK 470

Query: 697 ASVELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            S ELA   G Y+ +            K    +  V  I+ +       D   ++  +R+
Sbjct: 471 RSAELAGVVGPYAGYARNAEAHQRVMRKHQAANDAVRSINPV-------DRNIIDAATRV 523

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVV 802
            W ++ +  K  G RN+    +APT TI  +    +  I+P +  +  K  +  G   +V
Sbjct: 524 -WSDVVEIGKVNGFRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIV 582

Query: 803 NSFL---VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------ID 852
           N  +   + +L  +    EA+++ +  H    G++   P  L++ H   F+       + 
Sbjct: 583 NQVIPRALTKLGYQAEQIEAIVAYIAEH----GHVVDAP-GLRQEHYEVFDTAMGKRALQ 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           PM  +   +  Q ++  A S  + L E +  + ++ +Y ++W +GLK T   R
Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPETATVEDIEQVYMESWKLGLKATAIYR 690


>gi|222095084|ref|YP_002529144.1| ribonucleoside-diphosphate reductase, alpha subunit, n-terminal
           region [Bacillus cereus Q1]
 gi|221239142|gb|ACM11852.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus Q1]
          Length = 346

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 44  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 101

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 102 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 161

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 162 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 221

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 222 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 281

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 282 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 338

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 339 TVKMSNLC 346


>gi|291515281|emb|CBK64491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes shahii WAL 8301]
          Length = 850

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 151/635 (23%), Positives = 263/635 (41%), Gaps = 115/635 (18%)

Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394
           E + LL  F ++       T   +  +   LS+CF+     P D YG IF   +E   L 
Sbjct: 80  EVFALLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L  
Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSI 198

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D + +TG    +    N +  I D FM+                      Y
Sbjct: 199 KHPDAERFIDAKVDTG----KVTGANVSIKIDDDFMRAALAGKK---------------Y 239

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            ++F I  +N + + D         I A  LW K++   +++  P + F D     S P 
Sbjct: 240 HQQFPIKSDNPKYEQD---------IDARKLWEKIIHNAWKSAEPGVLFWDTIIRESIPD 290

Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625
            +     V  S+N C EI L         C L ++NLL++      A+ +F++DK    +
Sbjct: 291 CYADEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFKADAKFNFDKFRDHV 346

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A+ ++D++ID+    +E                        K ++     R  GLG+ 
Sbjct: 347 YKAMHMMDDIIDLELEKVEQIIGKIAADPEDLDVRRVELELWKKIREMARKGRRTGLGIT 406

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y + EA++ A E  + ++  A  ASV++A ERGA+  +  +       
Sbjct: 407 AEGDMLAALGLRYGTQEAIDFAVEVQKCLALAAYGASVKMAAERGAFPVYDAA------- 459

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    EV + +        P   L + +  +G RN   + IAPT T + +   +  
Sbjct: 460 --------KEVNNPMIARIREADP--ALYEEMTKVGRRNIAMLTIAPTGTTSLMSQTTSG 509

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P ++ +Y K     + + V++ +  E +  + + E  +    YH   +  +E    D 
Sbjct: 510 IEPVFRTVY-KRRRKINPSDVDTHVDYEDETGEKFQEYNV----YHHNFVKWLEASGYDT 564

Query: 842 KKI------------------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
            K+                   ATA +ID +  ++     QKW+D + S+ + L     +
Sbjct: 565 SKLATISDAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSE 624

Query: 884 KL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
            L   +YR AW  G K  T Y    R    +EK++
Sbjct: 625 ALVADVYRTAWECGCKGVTVYRDGCRDGVLLEKNS 659


>gi|229160403|ref|ZP_04288401.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623127|gb|EEK79955.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 364

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|297584572|ref|YP_003700352.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
 gi|297143029|gb|ADH99786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
          Length = 855

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 182/421 (43%), Gaps = 49/421 (11%)

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE------ 533
           N +  I   FM  V Q+  + L  PD    + +   KE E     +    D  E      
Sbjct: 369 NISVCITKEFMDAVEQDRDYELRFPD----VENYNEKEMEAYNREWHEYGDVREWEQLGF 424

Query: 534 -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
            I+ +RKI A  LW  +      +  P I F D  N  +     G  V ++N C E  L 
Sbjct: 425 GIRTYRKIKARELWELINICATYSAEPGIFFIDNANEMTNASAYGQKVVATNPCGEQPLA 484

Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             S    VCNL ++NL  +A       D++KL  T+ T VR+ DNVID   + +++    
Sbjct: 485 PYS----VCNLAAVNLAEMADRTTKTVDFEKLKQTVATGVRMQDNVIDATPYFLQENTDQ 540

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S    E+ D+  E I+  A   SVE+A+E+G++ 
Sbjct: 541 AKGERRVGLGVMGLHDLLIHTETTYGSEAGNELVDQIFETIAVTAYRESVEIAKEKGSFP 600

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +GS  ++  F          +RD        +   ++L + ++  G+RNS+ + +APT
Sbjct: 601 FLEGSNTEETAF----------LRDRFTQTGYMKKMPEDLLEDIRAYGIRNSHLLTVAPT 650

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  V + ++     +D  DE           
Sbjct: 651 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKAQIL-----QDYLDE----------- 694

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
              + E   D L +   ++ E+ P    +     Q+W+D   SL+  ++ P G  +D + 
Sbjct: 695 ---HPEVSSDQLPEWFISSMELTPEAHADVQCVIQRWVD--SSLSKTVNAPKGYTVDQVK 749

Query: 890 R 890
           R
Sbjct: 750 R 750



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLS--SCF-LTTV 376
           R A GL+  ET  E+R      FY+ L + +F+ +   L+ +G+ H  ++  +C+ +  +
Sbjct: 136 RNARGLSDVETNPEQREASFERFYHELVNMNFVPAGRVLYGAGS-HTDVTYFNCYVMPYI 194

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D   GI    ++   +    GG+G + + +R       G NGKS G + +L        
Sbjct: 195 ADSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTH 254

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFL 463
            V QGG R+GA    L  WH D+ EF+
Sbjct: 255 LVEQGGSRRGAQMIMLADWHPDILEFI 281


>gi|327478741|gb|AEA82051.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri DSM
           4166]
          Length = 716

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 237/569 (41%), Gaps = 54/569 (9%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           ++ D +  I G + E  +  K   G+G +++ +R  G+ + G    + G + F+ + +  
Sbjct: 110 SITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKM 169

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA     +  H DV EF+  ++  G    R    N +  I D FM+ V 
Sbjct: 170 CFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKREDG----RLRQFNLSLLITDEFMQTVE 225

Query: 495 QNAGWTLFSPD--------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +  W L  P         +++D   +  +E+ +      R       K++ ++ A  LW
Sbjct: 226 ADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYIVRDDGLVACKIYGRVKARHLW 285

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   ++   P     D  N  +       + ++N C E  L         C LGSIN
Sbjct: 286 DMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPCGEQPLPPYGS----CLLGSIN 341

Query: 607 LLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L  HF         +FD+DK    +R   R+LDNV++IN   +E+ +    + R  G+G 
Sbjct: 342 L-THFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEINGLPLEQQRHEIESKRRHGMGF 400

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--------- 711
           +G  S L LL + Y SPEA    +E    ++      ++EL++E+G              
Sbjct: 401 LGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALELSKEKGPAPLLSQNFEVTAE 460

Query: 712 ----KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
               +  +   G    D I G +   +    M + +    D L + +   G R ++  +I
Sbjct: 461 MLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAPD-LIEALAEQGARFTHHSSI 519

Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           APT TI    AN    S  I+PS+ + Y ++ +             E+   +L     + 
Sbjct: 520 APTGTISLSLAN--NASNGIEPSFAHHYSRNLIRPGRKAKEKI---EVFSYELLAYRTLI 574

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEP 880
           + +   GS    E++PD       TA ++ P   ++  +  QKW+D   +++ N+  D P
Sbjct: 575 NARAKPGSDEPGEKLPD----YFITADDVSPTQHVDIQAAAQKWVDSSISKTANVPTDYP 630

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
                D IYR AW  GLK     R   A 
Sbjct: 631 FEAFKD-IYRYAWRQGLKGCTTFRFNPAA 658


>gi|313203094|ref|YP_004041751.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Paludibacter propionicigenes WB4]
 gi|312442410|gb|ADQ78766.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paludibacter propionicigenes WB4]
          Length = 851

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 144/631 (22%), Positives = 254/631 (40%), Gaps = 119/631 (18%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVP--DDLYG-IFGALQENAMLA 394
           E + L   F ++    S  T   +  +   LS+CF+       D YG I    +E   L 
Sbjct: 73  ELFELFRDFKYIVPQGSPMTGIGNDFQVASLSNCFVIGFDGDSDSYGAIIKIDEEQVQLM 132

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 133 KRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDGRR-GALMLSVSI 191

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +  +G    +    N +  + D FMK    N               + Y
Sbjct: 192 KHPDSETFIDAKMESG----KVTGANISVKLHDDFMKAAINN---------------ETY 232

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            +++ +  EN             + + A A+W+K++   +++  P I F D     S P 
Sbjct: 233 TQQYPVTSEN---------PWFTKNVDANAIWKKIVHNAWQSAEPGILFWDTITRESVPD 283

Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  + +   S+N C EI L         C L +INL ++  N       FD++     +
Sbjct: 284 CYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYINNPFTPQASFDFELFHKHV 339

Query: 626 RTAVRVLDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLM 661
             A R++D++ID+    I                        EK K      R  G+G  
Sbjct: 340 GLAQRIMDDIIDLEMEKIDKIIAKIESDPEDEEIKNTEFQLWEKIKTKTSQGRRTGVGTT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L   Y + EA + +++  + ++  A  +SV +AQERGA+S +     +   +
Sbjct: 400 AEGDMLAALGFRYGTEEATDFSEKVHKAVALAAYRSSVTMAQERGAFSVYDAKREENNPY 459

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E   +L         ++++ K     G RN  C+ IAPT T + +   +  
Sbjct: 460 ----IQRLREADPQL---------YEDMAK----YGRRNIACLTIAPTGTTSIMTQTTSG 502

Query: 782 IDPSYQNLYVK--------SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           ++P +  +Y +         N+  DF   N          D W+E ++   K+      N
Sbjct: 503 VEPVFMPVYTRRRKVNPNDKNVRVDFIDENG---------DSWEEYVVFHHKFVTWMEAN 553

Query: 834 ------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                       ++ I        ATA ++D +  ++   R QKW+D + S+ + L   +
Sbjct: 554 NYSTTKRYTKEEVDEIVAKSPYYKATANDVDWLKKVQMQGRIQKWVDHSISVTINLPADA 613

Query: 882 GKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
            ++L   +Y +AW  G K     R  S   V
Sbjct: 614 TEELVGKLYEEAWRCGCKGVTVYRDGSRAGV 644


>gi|293556604|ref|ZP_06675171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
 gi|291601222|gb|EFF31507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
          Length = 827

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 188/429 (43%), Gaps = 47/429 (10%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K+ + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L 
Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472

Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 AVCNL +INL  +        D++KLA  +R +VR  DNVID   +  EK ++ 
Sbjct: 473 P----YAVCNLAAINLANMVDKKTKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQQ 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++ 
Sbjct: 529 AKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP 588

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              G   ++           A  +  +      ++P + +++ +   G+RNS+ + +APT
Sbjct: 589 FLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAPT 638

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  VNS +V+E  ++                
Sbjct: 639 GSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNSEIVSEYLEK---------------- 682

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886
              N E   D+L     +A E+ P   +      Q+W+D   S++  ++ P G   K++ 
Sbjct: 683 ---NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQVA 737

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            IY   +  G K  T Y   SR +  +   TL+  D      PV    ++  +L    S 
Sbjct: 738 AIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESS 793

Query: 945 TSDTECEVC 953
            ++  C +C
Sbjct: 794 EAEEICPIC 802



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352
           +I   R   +IN   +E P + +F ++A  +A  + + E EK+A    EFY  L+  + +
Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L+ +GT       +C++   + D   G+    QE   +    GG+G + + +R  
Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            A +HG NGKS G + +L    +    V QGG R+GA    L  WH D+ EF+
Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273


>gi|229057077|ref|ZP_04196469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720218|gb|EEL71797.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 364

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    IP  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIIPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|284992284|ref|YP_003410838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
 gi|284065529|gb|ADB76467.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
          Length = 951

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 144/596 (24%), Positives = 249/596 (41%), Gaps = 62/596 (10%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E   +L   +F  ++P  FN GT  PQ +S+CF+  V D++  I    +E  ++ K   G
Sbjct: 131 ELTWMLMHQYFSFNSPVWFNVGTNAPQQVSACFILAVDDEMDSILNWYREEGLIFKGGSG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D
Sbjct: 191 AGLNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPD 249

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514
           +EEF++ +    D  R   D   A +  DL  K +T    QNA  ++     VSD     
Sbjct: 250 IEEFIETKAREEDKIRALRD---AGYDMDLGGKDITSVQYQNANNSV----RVSD----- 297

Query: 515 GKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
             EF  A E+ +    R  +   V   + A  L+RK+    +E   P I + D  N    
Sbjct: 298 --EFMRAVEDGDEFGLRARLDGSVIETVDAKTLFRKVTRAAWECADPGIQYDDTINDWHT 355

Query: 573 QQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVR 630
               G +++SN C+E ++L++SS     CNL S+NL+    ++  FD       +   + 
Sbjct: 356 NPETGRINASNPCSEYMSLDNSS-----CNLASLNLMKFLEDDGTFDSRNFVKAVELVIT 410

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +   ++   +R +G+G     + L      Y S     +A      +
Sbjct: 411 AMDISICFADFPTDPIGETTRAYRQLGIGYANLGALLMATGHAYDSRGGQTLAAAITSLM 470

Query: 691 SFHAISASVELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAM 738
           +  A   S ELA   GAY  F            K +  +  + P+ +        D+  +
Sbjct: 471 TGTAYRRSAELAGIVGAYEGFARNADAHARVMRKHAAANDAIRPVGA--------DDADV 522

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMS 796
            + +   W E  +     G RN+    +APT TI  +    +  I+P +  + Y K    
Sbjct: 523 LKAATAQWQECLELGADFGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKYKKLVGG 582

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------ 850
           G   +VN  +   L+     DE + + ++Y     G++   P  L+  H   F+      
Sbjct: 583 GSMQIVNQTVPRALRSLGYQDEQIEAIVEYIS-EHGHVVDAP-SLRPEHYEVFDCAMGER 640

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            I PM  +   +  Q +I  A S  + + E +  + ++ IY Q W +GLK     R
Sbjct: 641 AISPMGHVRMMAAVQPFISGAISKTVNMPETATVEDVENIYFQGWKLGLKALAIYR 696


>gi|47566240|ref|ZP_00237268.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217958928|ref|YP_002337476.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228984527|ref|ZP_04144704.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155018|ref|ZP_04283132.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195648|ref|ZP_04322414.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|47556793|gb|EAL15124.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217063500|gb|ACJ77750.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228587897|gb|EEK45949.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628576|gb|EEK85289.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775230|gb|EEM23619.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 364

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|254785736|ref|YP_003073165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
 gi|237684341|gb|ACR11605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
          Length = 719

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 141/629 (22%), Positives = 265/629 (42%), Gaps = 77/629 (12%)

Query: 323 RVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLT--- 374
           R  +  AL   EK KRA    EF   L +   + +   + N+G +   P  S+   T   
Sbjct: 58  RKRVAKALSSVEKSKRAHWEKEFIWALDN-GAIPAGRIISNAGAQEYKPATSTINCTVSG 116

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D ++GI     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 117 TINDSMHGILEKNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIFDKM 176

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV++F+  ++  G  R+     N +  I D F++ V 
Sbjct: 177 CFTVSSAGGRRGAQMATFDVHHPDVQDFIRAKREDGKLRQ----FNLSLLITDDFIRAVK 232

Query: 495 QNAGWTL----------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           ++  W L            P +++D   +  +      +    +      ++++ I A  
Sbjct: 233 EDTDWALSFPLSQRDMEHKPVDLNDSTQVVWRRVPAKDKYITNEEGLTACRIYKSIPAKR 292

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW ++++  ++   P     D  N ++       + ++N C E  L         C LGS
Sbjct: 293 LWNQIMSSTYDFAEPGFILIDRVNDQNNNWFCENIRATNPCGEQPL----PPYGSCLLGS 348

Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL          N +F+++K    +    R+LDNV++IN   +E+ +      R  G+G
Sbjct: 349 VNLTVFVEEPFTENARFNWEKYRKVVAIFTRMLDNVVEINGLALEQQRDEITRKRRHGMG 408

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-------AYSSFK 712
            +G  S L LL IPY S  ++   ++    ++       + LA+E+G        Y   +
Sbjct: 409 FLGLGSTLALLRIPYGSSASIAFTEQVSRELAITGWREGLSLAKEKGMAPALADEYDVTE 468

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWD--ELKKRVKTIGMRNSNCMAI 766
             L  +     D +    +V+  +  +R     S+L  +  +L   +   G R ++  +I
Sbjct: 469 AMLRMRPAMAADGLKAGDKVKGSVLFSRYSNYMSKLAEEDPQLLADLAEHGCRFTHHSSI 528

Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----DLWDE 818
           APT TI    AN    S  I+PS+ + Y ++            ++ E K+     D++  
Sbjct: 529 APTGTISLSLAN--NASNGIEPSFAHHYSRN------------IIREGKKSKEKVDVFSY 574

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +++     D   G     P DL +   +A  + P   ++  +  QKW+D   S++  ++
Sbjct: 575 ELLAYRHLIDAEAG-----PSDLPEYFVSADSVAPSQHVDVQAAAQKWVD--SSISKTIN 627

Query: 879 EPSG---KKLDFIYRQAWLMGLKTTYYLR 904
            P+    +    IY  A+  GLK     R
Sbjct: 628 VPTNISYEAFKDIYLYAYDQGLKGCTTFR 656


>gi|331028061|ref|YP_004421775.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
 gi|301341524|gb|ADK73408.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
          Length = 586

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 177/410 (43%), Gaps = 63/410 (15%)

Query: 370 SCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +CF++ T+ D   GI           +  GG+G DW+ +R  G  I   +  S G I F+
Sbjct: 75  NCFVSQTIEDSTEGICDTFSRAFQTMRMGGGIGYDWSTLRPNGDMIVKLDSNSSGPISFM 134

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            + ++    +   G R+GA    L   H D+E F+ +++    D  +    N +  + D 
Sbjct: 135 GIFSELCHCIASSGHRRGAQMGVLRIDHPDIEAFIRIKQ----DLTKLTGFNISIAVTDE 190

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+                       GK F + +            + ++++  VALW +
Sbjct: 191 FMEAKAS-------------------GKPFTLRFNG----------RAYKQVDPVALWEE 221

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++   ++   P + F D  N  +   +   + ++N C E  L  +      C LGS+NL+
Sbjct: 222 VMRSTWDFADPGVLFIDTINRMNNLYYCETIAATNPCGEQPLPPN----GACLLGSLNLV 277

Query: 609 AHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            +   +      FD+ +  + I   VR +DNV+D   + +E+ K    + R +GLG  G 
Sbjct: 278 RYIKQDALGRRYFDWAQYRADIPHIVRAMDNVVDRAIYPLEEQKAEAISKRRMGLGFTGL 337

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            +A   L   Y SP  +E   + ++ ++ HA  AS  LA E+G++  F   L+       
Sbjct: 338 ANAGEALGFMYGSPGFIEFELQLLDELNHHAYMASSLLAAEKGSFPLFDADLF------- 390

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               L  E   +L          DE++  +K  G+RNS+  +IAPT TI+
Sbjct: 391 ----LAGEYAKQLD---------DEVRASIKKNGLRNSHLTSIAPTGTIS 427


>gi|52143986|ref|YP_082841.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|51977455|gb|AAU19005.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|324325468|gb|ADY20728.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 376

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 252 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 311

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 312 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 368

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 369 TVKMSNLC 376


>gi|257869921|ref|ZP_05649574.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804085|gb|EEV32907.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 831

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 216/487 (44%), Gaps = 55/487 (11%)

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY----ERQADRGEIK 535
           N +  + + FM  V ++  + L  PD + +  +    E++  +       E +A   ++K
Sbjct: 362 NISVCLTEEFMDAVKKDDWYALRFPD-IDNYSEEEMAEYDAKWAEVGDVREWEAAGHKVK 420

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSS 594
            +++I A  LW  +      +  P I F D  N  +     G  V ++N C E  L    
Sbjct: 421 TYQRIRARELWNLITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLTPY- 479

Query: 595 EETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              AVCNL ++NL A+ A++Q    D+ KL  T++TAVR  DNVID   +  +K ++   
Sbjct: 480 ---AVCNLAAVNL-ANMADHQTGTVDFAKLRETVKTAVRFQDNVIDATPYFFDKNERQAK 535

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R +GLG+MG    L      Y S E  ++ D+  E I+  A  AS++LA+E+G++   
Sbjct: 536 GERRVGLGIMGLADLLIYCEKTYGSAEGNQLVDQIFETIAITAYEASIDLAKEKGSFPFL 595

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            G   DQ     ++  L  +  D   M    ++P   +++ V   G+RNS+ + +APT +
Sbjct: 596 IGKD-DQ-----ETQALREKFIDTGYM---KKMP-AHIREGVMQFGIRNSHLLTVAPTGS 645

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              + GVS  ++P Y   Y +S   G F  +N+ +V E              L  H    
Sbjct: 646 TGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAAIVEEY-------------LANHP--- 689

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888
              E+  D L     +A E+ P   +      Q+W+D   S++  ++ P G    ++  +
Sbjct: 690 ---EQDKDQLPDFFISAMELSPEEHVGVQCAIQRWVD--SSISKTVNAPKGYSVSQVAKV 744

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           Y   +  G K  T Y   SR +  +   TL+ +D ++N     +P     +        S
Sbjct: 745 YMDLYDGGAKGGTVYVDGSRDSQVL---TLEAIDNEINT--QVEPAEDQFTTQTNEPVIS 799

Query: 947 DTECEVC 953
              C +C
Sbjct: 800 GDICPIC 806



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           + IE P   +      RVA G++ KE E+E    +FY  ++  + + +   L+ +GT + 
Sbjct: 118 NEIEKPLELYFEQIARRVARGISDKELEQELFLEQFYQQIAEQNLIPAGRVLYGAGT-NS 176

Query: 367 QLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q++  +CF+   + D   GI    QE   +    GG+G + + +R     +HG +G+S G
Sbjct: 177 QVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKACVVHGVSGRSSG 236

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +L    +    V QGG R+GA    +  WH D+  F+
Sbjct: 237 AVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDILAFI 276


>gi|255282089|ref|ZP_05346644.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
 gi|255267408|gb|EET60613.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
          Length = 757

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 204/448 (45%), Gaps = 72/448 (16%)

Query: 364 RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           R    S+C++ T P D++  IF   ++ A    Y GG G D + +   GA IH    ++ 
Sbjct: 69  RKVTYSNCYVITPPKDEIEDIFECAKKLARTYSYGGGCGIDISGLAPRGARIHNAAKETS 128

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+++ +     + Q G+R GA+   +++ H DVEEF++L+     D  +    N +
Sbjct: 129 GAVSFMELYSMVTALIGQNGRR-GALMISIDSSHPDVEEFINLKT----DLEKVTKANIS 183

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I + FMK V +N  + L    EV+                       GE ++ + + A
Sbjct: 184 VRIHEDFMKAVKENGEYLLSFTREVT-----------------------GE-RIEKTVQA 219

Query: 543 VALWRKMLTMLFETGHPWITFKDPC---NIRSPQQ---HVGVVHSSNLCTEITLNSSSEE 596
             L+ K+    ++   P   F D     N+ S  +   + GV    N C E  L +    
Sbjct: 220 KELFHKIALTNWDYAEPGALFWDRITGWNLLSNTKEFSYAGV----NPCAEEPLPAGGS- 274

Query: 597 TAVCNLGSINLLAHFAN------NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKK 648
              C LGSINL + F          FD +     ++ +VR L+ V++  +  H +++ ++
Sbjct: 275 ---CLLGSINL-SEFVQYPFTEAATFDMEGFRKCVQASVRALNEVLEEGLPLHPLQEQRE 330

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           S    R IGLG+MG   AL  L + Y   +AV + D+    ++  AI+ S ELA+E    
Sbjct: 331 SVAKWRQIGLGIMGLADALLKLGLTYGEQDAVAMCDKIGFAMADAAIATSAELAKE---- 386

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                    QG FP  +   + E    LA   TS    ++ ++ V+  G+RNS  + IAP
Sbjct: 387 ---------QGAFPACNAEEIMETPYFLA--NTS----EKTRELVRKYGLRNSQLLTIAP 431

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS 796
           T T++ + G+S  I+P Y N Y +   S
Sbjct: 432 TGTLSTMLGISGGIEPVYANSYQRKTES 459


>gi|89893068|ref|YP_516555.1| hypothetical protein DSY0322 [Desulfitobacterium hafniense Y51]
 gi|219666336|ref|YP_002456771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
 gi|89332516|dbj|BAE82111.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536596|gb|ACL18335.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
          Length = 1153

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 40/277 (14%)

Query: 600 CNLGSINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           CNLGSINL  +    N +   D+++L    R A R LDNVI+ N + +   ++    +R 
Sbjct: 661 CNLGSINLKLMVTEKNGKVVVDWERLGQITRLATRFLDNVIEANTYPLPSIEEMVKGNRK 720

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MGF   L LL   YAS +AVE A++ M FI   A   S  LA+ERG + +++GS+
Sbjct: 721 IGLGVMGFADMLILLQTSYASEDAVEYAEKVMNFIQTEARLESQRLAEERGTFPNYQGSI 780

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +D GV P                                   +RN+    IAPT TI+ I
Sbjct: 781 YD-GVRP-----------------------------------LRNATLTTIAPTGTISMI 804

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           CG S  ++P +   Y K+ M G   +  + +   L +   ++   +       G++    
Sbjct: 805 CGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQSLAEDYGFNSPELMRKIAEKGTVLGFP 864

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +P+ ++++  TA EI+P W I   +  QK+ D A S
Sbjct: 865 EVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDNAVS 901



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 132/293 (45%), Gaps = 38/293 (12%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKR--AVEFYNLLSSFHFM 352
           IL  RY    NG   E P+    RVA  +A  E     T+KE +  A  FY +++   FM
Sbjct: 23  ILEKRYLKQENGEVAESPEDMLYRVASIIAQVEETFGKTKKEVKELAKSFYEMMAKLEFM 82

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R   +
Sbjct: 83  PNSPTLMNAGRDLGQLSACFVLPVEDSMEEIFDAIKSAAIIHKSGGGTGFSFSRLRPKNS 142

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  +    +D
Sbjct: 143 TVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIREFITCK----ED 198

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
            +   + N +  I + FMK V +   + L  P        LY  E               
Sbjct: 199 NKEITNFNISVGITEEFMKAVQEKRHYNLIDPHTKEADGQLYAPE--------------- 243

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              VF+ I   A WR         G P I F D  N  +P   +G + ++N C
Sbjct: 244 ---VFQLIVDHA-WR--------NGEPGIIFLDRLNRDNPTPQLGEIEATNPC 284


>gi|293377855|ref|ZP_06624037.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
 gi|292643518|gb|EFF61646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
          Length = 827

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 190/430 (44%), Gaps = 49/430 (11%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K+ + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L 
Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 AVCNL +INL A+  + +    D++KLA  +R +VR  DNVID   +  EK ++
Sbjct: 473 P----YAVCNLAAINL-ANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQ 527

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++
Sbjct: 528 QAKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSF 587

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   ++           A  +  +      ++P + +++ +   G+RNS+ + +AP
Sbjct: 588 PFLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAP 637

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  VN+ +V+E  ++               
Sbjct: 638 TGSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK--------------- 682

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885
               N E   D+L     +A E+ P   +      Q+W+D   S++  ++ P G   K++
Sbjct: 683 ----NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQV 736

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             IY   +  G K  T Y   SR +  +   TL+  D      PV     +  +L    S
Sbjct: 737 AAIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLES 792

Query: 944 CTSDTECEVC 953
             ++  C +C
Sbjct: 793 SEAEEICPIC 802



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352
           +I   R   +IN   +E P + +F ++A  +A  + + E EK+A    EFY  L+  + +
Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L+ +GT       +C++   + D   G+    QE   +    GG+G + + +R  
Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            A +HG NGKS G + +L    +    V QGG R+GA    L  WH D+ EF+
Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273


>gi|229095935|ref|ZP_04226911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102051|ref|ZP_04232763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|229114889|ref|ZP_04244302.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668581|gb|EEL24010.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228681371|gb|EEL35536.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687445|gb|EEL41347.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 364

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|325571485|ref|ZP_08146985.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
 gi|325155961|gb|EGC68157.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
          Length = 825

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 194/439 (44%), Gaps = 57/439 (12%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C E  L 
Sbjct: 415 KVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 474

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 AVCNL +INL A+ A+ Q    D+ KL  T++TAVR  DNVID   +  +K ++
Sbjct: 475 PY----AVCNLAAINL-ANMADRQKGTVDFAKLKETVKTAVRFQDNVIDATPYFFDKNEQ 529

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E+G++
Sbjct: 530 QAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKGSF 589

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   DQ     ++  L  +  D   M    ++P   + + V   G+RNS+ + +AP
Sbjct: 590 PFLIGKN-DQ-----ETQALRKKFVDTGYMK---KMP-AHIHEGVLRFGIRNSHLLTVAP 639

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P Y   Y +S   G F  +N+ +V+E     L D           
Sbjct: 640 TGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEY----LMDHP--------- 686

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-- 886
                 ER    L     +A E+ P   +      Q+W+D   S++  ++ P G K+   
Sbjct: 687 ------ERTKAQLPAWFISAMELTPEEHVGVQCTIQRWVD--SSISKTVNAPKGYKVSQV 738

Query: 887 -FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSSTHSLG 939
             +YR  +  G K  T Y   SR +  +   TL+ V+ +L A    +PV   +    S  
Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPVVSGE 795

Query: 940 IPSSCTSDT-----ECEVC 953
           I   C   T      C  C
Sbjct: 796 ICPICHEGTIEEIGGCSTC 814



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 312 SRIEMPQAFFM-----RVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRH 365
           S IE P   F      RVA G++  E+  ++R +E FY  + + + + +   L+ +GT +
Sbjct: 114 SDIEKPLELFFEQVAHRVAKGISANESHDQERFLETFYQQIVAQNLIPAGRVLYGAGT-N 172

Query: 366 PQLS--SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            Q++  +CF+   + D   GI    QE   +    GG+G + + +R   + +HG +G+S 
Sbjct: 173 SQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSGRSS 232

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           G + +L    +    V QGG R+GA    +  WH D+  F+
Sbjct: 233 GAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFTFI 273


>gi|167833823|gb|ACA02699.1| RR-1 [Spodoptera frugiperda MNPV]
          Length = 850

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 151/634 (23%), Positives = 260/634 (41%), Gaps = 104/634 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L+++RD+          YD        + +E  Q  FMRVA+ +   + +K    +E Y+
Sbjct: 262 LRHDRDYT---------YDLRLYENKNNLLERVQHMFMRVALTMYGDDIQK---VIESYH 309

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G + 
Sbjct: 310 MMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVD 369

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                       ++  N      +  L V N+    +    K       ++E WH +V+ 
Sbjct: 370 ------------LYMQNVS----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKN 413

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE A
Sbjct: 414 FIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQA 470

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVG 577
           Y  +E++    +I     + A  L + ++  +   G+  + FKD  N    I   Q    
Sbjct: 471 YVKFEKEHINAKI-----VKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFSIEDEQVKYN 525

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           +V S+++  +  +N  ++                   QFDY+ L    +  VR LD +I+
Sbjct: 526 IVFSASVAVDKCVNLETK-------------------QFDYNLLRRITKNVVRDLDAMIN 566

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN + ++K +   H    I +G+ GF   L LL   +   EA  +     E I + AI A
Sbjct: 567 INMYPLDKFENKKHN---IAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEA 623

Query: 698 SVELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           S ELA+      E G   S +     Q ++ +               N T    W  L +
Sbjct: 624 SNELAEASKELNESGKKKSHRNEKITQQIYNV------------YTDNETLMWDWQSLHE 671

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V+  G+++   ++     T   I G   +  P    LY    ++     +   LV  L 
Sbjct: 672 KVERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALA 726

Query: 812 QRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM---WLIESASRRQKWI 867
             +L    +I S L   +GS+ N + IPD +KK+     E D     ++IE++     +I
Sbjct: 727 HENLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQLDYMIENSP----YI 782

Query: 868 DQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLK 898
           DQ Q L L+         D IY    +AW   LK
Sbjct: 783 DQTQELILH-----DTNYDNIYCNILKAWQNKLK 811


>gi|313125840|ref|YP_004036110.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
 gi|312292205|gb|ADQ66665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
          Length = 1044

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 170/670 (25%), Positives = 275/670 (41%), Gaps = 120/670 (17%)

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           ++ T K+KR   F +++ S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E
Sbjct: 137 IRTTVKDKRET-FQDMMESLSFMPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKE 195

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA  
Sbjct: 196 AAEVFQSGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQM 255

Query: 450 AYLETWHIDVEEFL-----------DLRKNTGDD---------------------RRRTH 477
             +   H DV +F+            LR N  DD                     R   H
Sbjct: 256 GVMRVSHPDVIQFIHAKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDDEGRVPKH 315

Query: 478 ----------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
                     + N +  I D FM+ + +N    +F+     + H    +  EI YE +  
Sbjct: 316 LRNAVEGHLSNFNISVGITDDFMEAL-ENGEEFVFTNPRTEEPHIATPETKEI-YEMF-G 372

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH------- 580
             +  E+     + A  LW +M+   +E G P + + +  N    +QH   V        
Sbjct: 373 LGEHVEVGEVLSVPAEKLWDQMVDGAYENGEPGVIYLERVN----KQHSFDVEKHPEHRI 428

Query: 581 -SSNLCTEITLNSSSEETAVCNLGSINL--LAHF---------ANNQFDYDKLAST---- 624
            ++N C E  L    EE   CNLG INL  LA           A N  DYD +       
Sbjct: 429 LATNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWQAENGDDYDSIEDAVDAF 484

Query: 625 -------------IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                        I    R L+NV+ ++   +EK ++     R IGLG+MG       L 
Sbjct: 485 LEEAIDWEEFDHRIDNGTRFLENVVTMSDFPVEKIEEKVRAMRKIGLGVMGLAQLYIQLG 544

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S    E+A + M  I+  +  AS ELA+ERG +       WD   F   +     E
Sbjct: 545 IRYGSDSGNEVARQLMTHINHQSKWASHELAEERGTFED-----WDDSKFADPT-----E 594

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            R+    +  + L  DE +       +RN N   IAPT T + +   +   +P Y   Y 
Sbjct: 595 YREWFEHH--TGLDADEWEDGFP---IRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYY 649

Query: 792 KS---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDD 840
           K+   ++ GD  +V  + + +  L+  D+  +A+  + +        DG  G +E +P+ 
Sbjct: 650 KNVSDDVQGDEMLVEFDDYFLRVLEANDIDVDAVKEEAQEQMANNEFDGVEG-LETVPNA 708

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK- 898
           + ++     ++            QK +D A S    + +  S + +D +YR  +  G K 
Sbjct: 709 IGELFVVTSDLSGKDHAAVQCACQKGVDSAISKTCNFPNSASKEDMDEVYRYIYNNGGKG 768

Query: 899 -TTYYLRSRS 907
            T Y   +RS
Sbjct: 769 VTVYRDGTRS 778


>gi|315606269|ref|ZP_07881285.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
 gi|315251960|gb|EFU31933.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
          Length = 855

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 166/714 (23%), Positives = 298/714 (41%), Gaps = 113/714 (15%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK- 337
            A  LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +    
Sbjct: 13  FAASLKY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEIARIERKYANP 69

Query: 338 -RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQEN 390
               E + LL  F ++    + +   G  H    LS+CF+  +  D   YG I    +E 
Sbjct: 70  LSEEEIFGLLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDEEQ 129

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+  
Sbjct: 130 VQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALML 188

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  + D FM+    N              
Sbjct: 189 SVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDNRP------------ 232

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
              Y ++F +  +           KV ++ISA ALW K++   +++  P + F D     
Sbjct: 233 ---YVQQFPVTGD---------APKVKKEISAKALWEKIVHNAWKSAEPGVLFWDTILRE 280

Query: 571 S-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKL 621
           S P  +  +     S+N C EI L         C L SINL ++       +  F+ DK 
Sbjct: 281 SIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLISINLYSYVEHPFTPDAHFNMDKF 336

Query: 622 ASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIG 657
               + A R++D+++D+                          H  EK K  +   R  G
Sbjct: 337 KQHAQLAQRLMDDIVDLEMEKIELIMEKIKADPQSEEVKGAEYHLWEKIKHKSSLGRRTG 396

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+      L  + + Y + EA + + E  + ++ +A ++SV++A+ERGA+  F     +
Sbjct: 397 VGITAEGDMLAAMGLRYGTQEATDFSVEVHKALALNAYASSVQMAKERGAFEIFDAKREE 456

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
              F    I  L +   +L         +D++ K     G RN  C+ IAPT T + +  
Sbjct: 457 HNPF----ILRLKDADPQL---------YDDMVK----YGRRNIACLTIAPTGTTSLMTQ 499

Query: 778 VSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN--- 833
            +  I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+      N   
Sbjct: 500 TTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHRKFLTWMQANGLD 557

Query: 834 ---------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
                    I+ +        ATA ++D +  ++     QKW+D + S+ + L     + 
Sbjct: 558 TEKRYTQEEIDALVSRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEA 617

Query: 885 L-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSSTH 936
           L + +Y +AW  G K     R  S + V  S  K    K  +V PV +     H
Sbjct: 618 LVNRLYVEAWKSGCKGCTIYRDGSRSGVMISVSKKDKKKETSVAPVAEAVPCKH 671


>gi|325297273|ref|YP_004257190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
 gi|324316826|gb|ADY34717.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
          Length = 869

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 156/650 (24%), Positives = 266/650 (40%), Gaps = 107/650 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSC 371
           P+    R+A  +A  E +      A E + L   F ++    S  T   +  +   LS+C
Sbjct: 69  PEDMHWRIANEVARIEAKYPNGLSAQELFGLFDHFKYIIPQGSPMTGIGNDYQIASLSNC 128

Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D YG I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF+
Sbjct: 129 FVIGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 188

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  + D 
Sbjct: 189 ERYSNSTREVAQDGRR-GALMMTVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDE 243

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+   +N  +    P  +   H +  KE                      I A ALW+K
Sbjct: 244 FMEAAVENRPYVQQFP--IGSPHPMVKKE----------------------IDASALWKK 279

Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604
           ++   +++  P + F D     S P  +  +     S+N C EI L         C L +
Sbjct: 280 IVHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 335

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------------ 647
           INL ++  N       FD+D     +  A R++D++ID+    IEK              
Sbjct: 336 INLYSYVVNPFTPEAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIMEKIDSDPESEEV 395

Query: 648 KSNHTH------------RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           K    H            R  G+G+      L  L + Y + EA E A+   + I+  A 
Sbjct: 396 KGTERHLWEKIYRKSGMGRRTGVGITAEGDMLAALGLRYGTEEATEFAERVQKTIALEAY 455

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV +A+ERGA+  +         F    +  L E    L         ++E+KK    
Sbjct: 456 RSSVVMAKERGAFEIYDTEREKDNPF----VNRLREADPGL---------YEEMKK---- 498

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814
            G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V    V+E    D
Sbjct: 499 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDENVRIDFVDETG--D 556

Query: 815 LWDEAMISDLKY--------HDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASR 862
            ++E ++   K+        +D      +   DDL        AT+ ++D +  ++   R
Sbjct: 557 AFEEYLVFHHKFLAWMKVNGYDPDKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGR 616

Query: 863 RQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
            QKW+D + S+ + L     ++L + +Y +AW  G K     R  S   V
Sbjct: 617 IQKWVDHSISVTINLPNNVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGV 666


>gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 945

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 150/592 (25%), Positives = 247/592 (41%), Gaps = 54/592 (9%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  + L +  F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G
Sbjct: 126 ELKHALVNQVFSFNSPVWFNVGTASPQQVSACFILAVDDQMESILDWYKEEGVIFKGGSG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D
Sbjct: 186 SGVNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 244

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514
           +EEF++ +    D  R   D   A +  DL  K +     QNA  ++     VSD     
Sbjct: 245 IEEFIETKAREEDKVRALRD---AGFDMDLGGKDIVSVQYQNANNSV----RVSD----- 292

Query: 515 GKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
             EF  A E  E    R  +  +V  K+ A  L+RKM T  +E   P + + D  N    
Sbjct: 293 --EFMRAVEKGEEFGLRARLTGEVIEKVDAGRLFRKMATAAWECADPGVQYDDTINDWHT 350

Query: 573 QQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVR 630
               G + +SN C+E + L++SS     CNL SINL+     +N FD +         + 
Sbjct: 351 SPETGRITASNPCSEYLHLDNSS-----CNLASINLMKFLKDDNSFDIESFVKITELIIT 405

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       EK  ++   +R +G+G     + L      Y S     IA      +
Sbjct: 406 AMDVSITFADFPTEKIDQTTRAYRQLGIGYANLGALLMATGHAYDSEGGRAIAGAVTSLM 465

Query: 691 SFHAISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  +   S ELA   G Y  +  +      +  +     D +  L E  D+      SR 
Sbjct: 466 TGASYRRSAELAAVVGPYDGYARNADAHKRVMRKHAAANDDLRTL-EGMDKAIHAEASR- 523

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVV 802
            W E  K  +  G RN+    +APT TI  +    +  I+P    +  K  +  G   +V
Sbjct: 524 QWTECLKLGERNGYRNAQASLLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIV 583

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD--DLKKIHATAFE-------IDP 853
           N  +   L+Q    +E + + ++Y    I +   + D   LK  H   F+       I P
Sbjct: 584 NQTIPRALRQLGYPEEQVEAIVEY----IASNSHVVDAPGLKPEHYEVFDCAMGERAIAP 639

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           M  +   +  Q ++  A S  + L E +  + ++ +Y + W +GLK     R
Sbjct: 640 MGHVRMMAAAQPFLSGAISKTVNLPEAATVEDIEQVYMEGWKLGLKALAVYR 691


>gi|229172090|ref|ZP_04299655.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611433|gb|EEK68690.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 364

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|229029123|ref|ZP_04185220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732181|gb|EEL83066.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 364

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|218663033|ref|ZP_03518963.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 427

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 202/451 (44%), Gaps = 74/451 (16%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD+  +    N    LFSP +V  ++ +   E  +  +  E  AD    K  +KI+A  
Sbjct: 5   VPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK--KKINARE 62

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E        
Sbjct: 63  FFQVLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVSEASEYDDDLSYK 120

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+ A  A +  D+ K   TI T++R L  V D++   ++   +K N 
Sbjct: 121 HLGKDISCNLGSLNIAA--AMDSADFGK---TIETSIRALTAVSDMSHIASVPSIEKGND 175

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
              AIGLG M     L    I Y S E V+  +     +++HAI AS  LA ERG ++  
Sbjct: 176 ESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKG 235

Query: 711 FKGSLWDQGVF----------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           F+ S +  G +          P  +   +  + D+  ++  ++  W  LK  V T G+ N
Sbjct: 236 FENSKYASGDYFDKYTEQEWKP--ATEKVQALFDKSGIHIPTQDDWASLKTAVMTSGLYN 293

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            N  A+ PT +I+ I   + SI P                     +V++++ R       
Sbjct: 294 QNLQAVPPTGSISYINHSTSSIHP---------------------IVSKIEIR------- 325

Query: 821 ISDLKYHDGSIGNIER----IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                  +G IG +      + +D    +  A+EI    +I++ +   + +DQ  SL L+
Sbjct: 326 ------KEGKIGRVYYPAPFMTNDNLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLF 379

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             D  + + ++     AW  G+KT YY+R R
Sbjct: 380 FRDTATTRDINKAQIYAWKKGIKTIYYIRLR 410


>gi|331082220|ref|ZP_08331347.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403014|gb|EGG82579.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 755

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 142/550 (25%), Positives = 245/550 (44%), Gaps = 84/550 (15%)

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           S+C++   P D++  IF   ++ A    Y GG G D + +   GA I+    ++ G + F
Sbjct: 74  SNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAVSF 133

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ +     + Q G+R GA+   ++  H DV EF++L+     D  + +  N +  I +
Sbjct: 134 MELYSLVTSLIGQNGRR-GALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRIHE 188

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+ V +N  + L                      +Y R+ + G++ + R ++A  L+ 
Sbjct: 189 DFMEAVKKNEEYCL----------------------HYTRE-ETGQV-IERMVNARELFH 224

Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++    ++   P   F D     N+ S  +        N C E  L +       C LGS
Sbjct: 225 RITETNWDYAEPGALFWDRITGWNLLSNTKEFSYA-GVNPCAEEPLPAGGS----CLLGS 279

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657
           INL A   N       FD+++    ++ +VR L+ V++  +  H + + ++S    R IG
Sbjct: 280 INLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQIG 339

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E GA          
Sbjct: 340 LGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGA---------- 389

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
              FP   +  + E    LA N T     +  K+ V+  G+RNS  + IAPT T++ + G
Sbjct: 390 ---FPKCKVEEIMETPYFLA-NTT-----EGTKELVRKYGLRNSQLLTIAPTGTLSTMLG 440

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           +S  I+P Y N Y +   S     V   +  ++  +D  +E  +SD +           +
Sbjct: 441 ISGGIEPIYANYYERKTESLHGEDVYYKVYTKI-VKDFMEEHKVSDDRL----------L 489

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWL 894
           PD       TA  +D    I+  S  Q+ ID   S++  ++ PSG   ++ + +Y  A+ 
Sbjct: 490 PD----YFVTAMTLDYHQRIDMQSIWQRHID--ASISSTVNVPSGFTVEETENLYLYAFE 543

Query: 895 MGLKTTYYLR 904
            GLK     R
Sbjct: 544 QGLKGITIFR 553


>gi|260588503|ref|ZP_05854416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260540978|gb|EEX21547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 760

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 142/550 (25%), Positives = 245/550 (44%), Gaps = 84/550 (15%)

Query: 369 SSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           S+C++   P D++  IF   ++ A    Y GG G D + +   GA I+    ++ G + F
Sbjct: 79  SNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAVSF 138

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ +     + Q G+R GA+   ++  H DV EF++L+     D  + +  N +  I +
Sbjct: 139 MELYSLVTSLIGQNGRR-GALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRIHE 193

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+ V +N  + L                      +Y R+ + G++ + R ++A  L+ 
Sbjct: 194 DFMEAVKKNEEYCL----------------------HYTRE-ETGQV-IERMVNARELFH 229

Query: 548 KMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           ++    ++   P   F D     N+ S  +        N C E  L +       C LGS
Sbjct: 230 RITETNWDYAEPGALFWDRITGWNLLSNTKEFSYA-GVNPCAEEPLPAGGS----CLLGS 284

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657
           INL A   N       FD+++    ++ +VR L+ V++  +  H + + ++S    R IG
Sbjct: 285 INLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQIG 344

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E GA          
Sbjct: 345 LGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGA---------- 394

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
              FP   +  + E    LA N T     +  K+ V+  G+RNS  + IAPT T++ + G
Sbjct: 395 ---FPKCKVEEIMETPYFLA-NTT-----EGTKELVRKYGLRNSQLLTIAPTGTLSTMLG 445

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           +S  I+P Y N Y +   S     V   +  ++  +D  +E  +SD +           +
Sbjct: 446 ISGGIEPIYANYYERKTESLHGEDVYYKVYTKI-VKDFMEEHKVSDDRL----------L 494

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWL 894
           PD       TA  +D    I+  S  Q+ ID   S++  ++ PSG   ++ + +Y  A+ 
Sbjct: 495 PD----YFVTAMTLDYHQRIDMQSIWQRHID--ASISSTVNVPSGFTVEETENLYLYAFE 548

Query: 895 MGLKTTYYLR 904
            GLK     R
Sbjct: 549 QGLKGITIFR 558


>gi|328956633|ref|YP_004374019.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328672957|gb|AEB29003.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 849

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 193/440 (43%), Gaps = 68/440 (15%)

Query: 489 FMKRVTQNAGWTL-------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           FM+ V + A + L       +SP+E+ + +  + +  ++   ++E       +  +R I 
Sbjct: 379 FMEAVEKGADYPLRFPAVETYSPEEMEEYNAHWSEIGDV--RDWESSGHG--VHTYRTIP 434

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +         P I F D  N  +     G  V ++N C E  L   S    VC
Sbjct: 435 ARELWKLITICATYAAEPGIFFIDNANQMTNASAYGQKVVATNPCGEQPLAPYS----VC 490

Query: 601 NLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NL ++NL  +A+  +   ++DKL  T++  VR+ DNVID   + + + +K     R +GL
Sbjct: 491 NLAAVNLAEMANKKSGTINFDKLKQTVQVGVRMQDNVIDATPYFLAENEKQALGERRVGL 550

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG    L      Y S E  ++ D+  E I+  A  AS+ELA+ERG+           
Sbjct: 551 GIMGLADLLIYCGAEYGSQEGNQLVDKIFEVIAVSAYEASIELAKERGS----------- 599

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTAT 771
             FP     L+ +   E    R   L    +KK  K I       G+RNS+ + +APT +
Sbjct: 600 --FPF----LIGKTEAETTKLREKFLQSGYMKKMPKHIHEGIMRYGIRNSHLLTVAPTGS 653

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              + GVS  ++P Y   Y +S   G F  V + +V E              L +H    
Sbjct: 654 TGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEY-------------LDHHP--- 697

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888
              E  P+ L K   +A  + P   ++     Q+WID   S++  ++ P G   +++  I
Sbjct: 698 ---ETDPERLPKQFVSAMSLKPEAHVDVQCTIQRWID--SSISKTVNAPRGYTVEQVQTI 752

Query: 889 YRQAWLMGLK--TTYYLRSR 906
           Y + +  G K  T Y   SR
Sbjct: 753 YERLYKGGAKGGTVYVDGSR 772



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTRH 365
           IE P   F      R A GLA  E+  EKR V    FY  L S +F+ +   L+ +G++ 
Sbjct: 123 IEKPLEIFYEQIAKRNATGLAAIESTPEKRKVAYTAFYEELKSLNFVPAGRVLYGAGSKT 182

Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +C++   VPD   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 183 DVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSG 242

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +L         V QGG R+GA    L  WH D+ EF+
Sbjct: 243 AVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFI 282


>gi|239909099|ref|YP_002955841.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
 gi|239798966|dbj|BAH77955.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
          Length = 1096

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 42/312 (13%)

Query: 599 VCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            CNLGSINL   +   A +  D+  LA T+  AVR LDNVID + + +++  +    +R 
Sbjct: 647 ACNLGSINLSVFYDPSAPDGIDWAGLAETVHLAVRFLDNVIDASRYPLDQITEMVRANRK 706

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MGF   L+LL IPY S EA+ +A++ ME +   A SAS  LA ERGA+ ++  S+
Sbjct: 707 IGLGVMGFADLLYLLRIPYDSTEALTLAEKLMETVQAEARSASKTLAAERGAFPAYPESI 766

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIAN 774
           + +                                   + +G  RN+    IAPT T++ 
Sbjct: 767 YGK-----------------------------------RNLGPYRNATTTTIAPTGTLSI 791

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G S  I+P +   + +  M G+  V  N   V  L++     +A++ ++    GSI +
Sbjct: 792 IAGCSSGIEPLFALSFARHVMDGEKLVEANPHFVTALREAGAHSDALMEEVT-RKGSIAH 850

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQA 892
           I  +P+ L+++  TA +I+P+W ++  +  QK+ D A S  + L   + K ++  IY  A
Sbjct: 851 IGLLPEALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNSATKEEIREIYWLA 910

Query: 893 WLMGLKTTYYLR 904
           + +G K     R
Sbjct: 911 YELGCKGVTVYR 922



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 39/297 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSF 349
           + +L  RY      G+  E  Q  F RVA  +A +E        + E  A +FY+L+   
Sbjct: 1   MVVLSKRYLKKSPEGAPEEDVQGLFWRVAGAIASEEAKYAASPWQPEALARKFYDLMVGM 60

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R 
Sbjct: 61  RFLPNSPTLMNAGTPLGQLAACFVLPVGDSMDEIFDAVKFAALIHKSGGGTGFSFSRLRP 120

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++  
Sbjct: 121 KKSRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFIACKERE 180

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G+      + N +  + + FM+ V +   + L  P + S                     
Sbjct: 181 GE----LTNFNISVALTERFMQAVEKGEDYDLIDPRDGS--------------------- 215

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            RG       +SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C 
Sbjct: 216 KRG------SLSAPEVFALLVRKAWESGDPGIVFLDRINRDNPTPALGAIESTNPCV 266


>gi|282858151|ref|ZP_06267346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
 gi|282584073|gb|EFB89446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
          Length = 894

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 142/611 (23%), Positives = 245/611 (40%), Gaps = 115/611 (18%)

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-G 416
           L++  T + QL +CF+  +PD + GIF +++  A+++KY GG+G ++  +R  GA I  G
Sbjct: 138 LYDGKTDNQQLFACFVIDIPDSIEGIFDSVRAAAVISKYGGGVGGNFGRLRERGADIKGG 197

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T GK+ G + F++  N     V QGG+R+ A+   L   H D+E+F+D +   G    + 
Sbjct: 198 TGGKASGPVSFMETWNTMGCVVVQGGRRRAALMGMLPDDHPDIEQFMDAKTEEG----KL 253

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  + D  +    +   + L S                           R   KV
Sbjct: 254 SYFNISVCVSDELVGAAREKRPFALRS---------------------------RANGKV 286

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSS 594
            R +S   LW K+    +  G P + F D  N  +  +  G   + S+N C E  L + +
Sbjct: 287 VRTVSGDELWNKLCQNAWRRGDPGVFFIDRANDDNLLKLSGDFDIESTNPCGEQPLPTYT 346

Query: 595 EETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                CNLGS+NL+            FD +     +  ++  LD VID   + +++  + 
Sbjct: 347 S----CNLGSVNLVKFVRPDETGRQSFDMEGFMDQVYRSIYYLDLVIDATSYPLQRIGER 402

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--- 706
               R +GLGLMG   A  L    Y S       D     ++  A+ A+V+     G   
Sbjct: 403 TKRIRPVGLGLMGLADAAILSGDVYGSESFKSFCDSLGAHMAGAALMATVDAVAHMGKEP 462

Query: 707 ----------------------------------AYSSFKGSLWDQGVFP---IDSIGLL 729
                                             +Y  F   +   G  P   ++++ +L
Sbjct: 463 FSESFAVARLFEEEHRAHGGELFARQWIDEMDLNSYREFIARMRTHGQVPYTLLNTLEIL 522

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +V  + A+    RL    L+ +     +RNS  ++IAPT +I+ I   S  I+P++   
Sbjct: 523 PDVLGDEALPELKRLMTALLEGK-----LRNSRRLSIAPTGSISMIFDSSAGIEPNFAWR 577

Query: 790 YVKSNMSGD---FTVVNSF--LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           + +  M  D   + V   F  L+ + +  +L    +ISD +Y                  
Sbjct: 578 WSRKVMKSDGDGWEVREYFHPLITQKEADELRGSGVISDPRY------------------ 619

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTY 901
             TA++I P   ++      +++D   S  + L   +    +  +Y   + MG K  T Y
Sbjct: 620 -VTAYDISPEQHVDVTGIFARYVDSGISKTVNLSSSATVDDVRKVYETCYDMGCKGITIY 678

Query: 902 YLRSRSATSVE 912
              SR    +E
Sbjct: 679 RDGSRDNQPIE 689


>gi|198275618|ref|ZP_03208149.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
 gi|198271247|gb|EDY95517.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
          Length = 883

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 155/658 (23%), Positives = 271/658 (41%), Gaps = 115/658 (17%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSC 371
           P+    R+A  +A  E +      A E ++LL  F ++    S  T   +  +   LS+C
Sbjct: 83  PEDMHWRIANEVARIEAKYPNAISAQELFDLLDHFKYIVPQGSPMTGIGNDYQIASLSNC 142

Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D YG I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF+
Sbjct: 143 FVIGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 202

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  + D 
Sbjct: 203 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKLDDE 257

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+   +   +T   P                         D     V ++I A ALW+K
Sbjct: 258 FMQAAVEGKPYTQQYP------------------------IDSPNPMVSKEIDASALWKK 293

Query: 549 MLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGS 604
           ++   +++  P + F D     S P  +  +     S+N C EI L         C L +
Sbjct: 294 IVHNAWKSAEPGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLA 349

Query: 605 INLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID-----INC-------------- 640
           INL ++  N       FD++     +  A R++D++ID     I C              
Sbjct: 350 INLYSYVVNPFTPEAYFDFELFKKHVALAQRIMDDIIDLELEKIECILEKIDSDPESMEV 409

Query: 641 -----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                H  EK    +   R  G+G+      L  + + Y + EA E +++  + I+  A 
Sbjct: 410 KGSERHLWEKIYHKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEKVHKTIALEAY 469

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV +A+ERGA+  +         F    I  L +   EL         ++E++K    
Sbjct: 470 RSSVNMAKERGAFEIYDAEREKNNPF----INRLKDADPEL---------YEEMRK---- 512

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814
            G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E    D
Sbjct: 513 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDANVHVDFVDETG--D 570

Query: 815 LWDEAMI---------------SDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIE 858
            ++E ++                D +Y    I   +E+ P       AT+ ++D +  ++
Sbjct: 571 AFEEYVVFHHKFLTWMKINGYDPDKRYTQEEIDELVEKSP----YYKATSNDVDWLMKVK 626

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              R QKW+D + S+ + L     + L + +Y +AW  G K     R  S   V  ST
Sbjct: 627 MQGRIQKWVDHSISVTINLPNNVSEDLVNQLYVEAWRSGCKGCTVYRDGSRAGVLIST 684


>gi|295134666|ref|YP_003585342.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
 gi|294982681|gb|ADF53146.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
          Length = 850

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 164/679 (24%), Positives = 276/679 (40%), Gaps = 111/679 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  ++  ++Y L  +   I  + P     R+A  +A  E        E   ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSDGNIYEQTPNDMHRRIAKEIARVEQRYPNPMTEDEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAMLAKYSGG 399
             F ++    +   +G  +P     LS+CF+       D   G+    QE   L K  GG
Sbjct: 86  KDFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGNEGSSDSYGGVMKIDQEQVQLMKRRGG 144

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D 
Sbjct: 145 VGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSVSINHPDS 203

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+F+D +   G    +    N +  I D FMK V     +T   P   SD          
Sbjct: 204 EDFIDAKMEQG----KVTGANVSVRIDDDFMKAVKNKTAYTQKYP-VFSDAP-------- 250

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSPQQHVGV 578
                          K  ++I A  LW+K++   +++  P I F D   N   P  +  +
Sbjct: 251 ---------------KFSKEIEAEKLWKKIVHNAWKSAEPGILFWDTVINESVPDCYADL 295

Query: 579 VH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
            +   S+N C EI L         C L +INL ++  +      +F+Y      I  A R
Sbjct: 296 GYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEDPFTTKAKFNYTLFKKHISAAQR 351

Query: 631 VLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSA 666
           ++D++ID+    I+                          KK     R  G+G+      
Sbjct: 352 IMDDIIDLELEKIDAILQKIDADPENEDVKGVERNLWLNIKKKAEEGRRTGIGITAEGDM 411

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L I Y S E V  + E  + I+  A  ASVE A+ERGA+  F      +  F    I
Sbjct: 412 LAGLGIKYGSEEGVAFSTEIHKNIALAAYRASVETAKERGAFGIFDSDREKENPF----I 467

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L E  DE       +L +D L+      G RN   + IAPT T + +   +  I+P +
Sbjct: 468 LRLKEA-DE-------KLYYDMLE-----YGRRNIALLTIAPTGTTSLMTQTTSGIEPVF 514

Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIERI 837
             +Y  +  ++ +   V    V+E+   D W+E ++   ++        HD         
Sbjct: 515 LPVYKRRRKVNPNDKDVRVDFVDEVG--DSWEEYVVFHHRFKEWMKINGHDIDKNYSNTD 572

Query: 838 PDDLKKI----HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
            D+L K      AT+ ++D +  +      QKW+D + S+ + L ++ S   +  +Y +A
Sbjct: 573 LDELVKASPYYQATSNDVDWLSKVRMQGAVQKWVDHSISVTINLPNDVSEDLVGRLYLEA 632

Query: 893 WLMGLKTTYYLRSRSATSV 911
           W  G K     R  S + V
Sbjct: 633 WQAGCKGVTVYRDGSRSGV 651


>gi|229084442|ref|ZP_04216721.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698870|gb|EEL51576.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 364

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RV++  L L   +  K A +
Sbjct: 62  NVAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVSIVSLYLGRGDVNK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANKQHPLKGIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|227550161|ref|ZP_03980210.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257897485|ref|ZP_05677138.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
 gi|227180728|gb|EEI61700.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257834050|gb|EEV60471.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
          Length = 827

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 188/429 (43%), Gaps = 47/429 (10%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K+ + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L 
Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472

Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 AVCNL +INL  +        D++KL   +R +VR  DNVID   +  +K ++ 
Sbjct: 473 PY----AVCNLAAINLANMVDKKTKVVDFEKLTDVVRASVRFQDNVIDATPYFFKKNEQQ 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++ 
Sbjct: 529 AKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP 588

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              G   ++      +  L     +   M    ++P + +++ +   G+RNS+ + +APT
Sbjct: 589 FLVGKTVEE------TTALRQRFIESGYMK---KMP-ESIRQAILKYGIRNSHLLTVAPT 638

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  VN+ +V+E  ++                
Sbjct: 639 GSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK---------------- 682

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLD 886
              N E+  D+L     TA E+ P   +      Q+W+D   S++  ++ P G   K++ 
Sbjct: 683 ---NPEKTADNLPPFFVTAMELSPKDHVSVQCTIQRWVD--SSISKTVNAPKGYQVKQVA 737

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            IY   +  G K  T Y   SR +  +   TL+  D      PV     +  +L    S 
Sbjct: 738 AIYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLESS 793

Query: 945 TSDTECEVC 953
            ++  C +C
Sbjct: 794 EAEEICPIC 802



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352
           +I   R   +IN   +E P + +F ++A  +A  + + E EK+A    EFY  L+  + +
Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L+ +GT       +C++   + D   G+    QE   +    GG+G + + +R  
Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            A +HG NGKS G + +L    +    V QGG R+GA    L  WH D+ EF+
Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273


>gi|229016700|ref|ZP_04173633.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
 gi|229022912|ref|ZP_04179432.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228738447|gb|EEL88923.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228744608|gb|EEL94677.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
          Length = 364

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 155/308 (50%), Gaps = 11/308 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-ANH 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I
Sbjct: 240 EFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDI 299

Query: 521 AYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             E Y+      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G
Sbjct: 300 D-EMYDELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIG 356

Query: 578 VVHSSNLC 585
            V  SNLC
Sbjct: 357 TVKMSNLC 364


>gi|292656576|ref|YP_003536473.1| ribonucleoside-diphosphate reductase [Haloferax volcanii DS2]
 gi|291372162|gb|ADE04389.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloferax volcanii DS2]
          Length = 1033

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 185/461 (40%), Gaps = 105/461 (22%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  L+    FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G
Sbjct: 149 FEELMEQLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQSGGGMG 208

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +
Sbjct: 209 YAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVSHPDVIQ 268

Query: 462 FL-----------DLRKNTGDDRRRTH-------------------------------DM 479
           FL            LR N  DD   T                                + 
Sbjct: 269 FLHAKNKDVSLAHTLRLNDPDDFTHTKFVDALDEARELIDEDGRVPKHLRNAVEGHLSNF 328

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQAD 530
           N +  I D FMK +  +  +   +P          +  +++D++G              +
Sbjct: 329 NISVGITDGFMKALYNDEEFVFTNPRTEEPHVATPQTKEIYDMFG------------LGE 376

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-------RSPQQHVGVVHSSN 583
             E+     + A  LW +++   +E G P + + +  N        + P      + ++N
Sbjct: 377 YVEVGEVLSVPAKELWDQIIEGAWENGEPGVVYLERANKEHSFDVEKHPDHQ---ILATN 433

Query: 584 LCTEITLNSSSEETAVCNLGSINLL---------------AH-------------FANNQ 615
            C E  L    EE   CNLG INL                AH             F  + 
Sbjct: 434 PCGEQPL----EEYEACNLGHINLSTLVAEDSPDWRVWYDAHSDEYDSLEAATEAFLEDA 489

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+++    I +  R L+NV+ ++   +EK ++     R IGLG+MG       L + Y 
Sbjct: 490 VDWEEFNHRIESGTRFLENVVTMSDFPVEKIEEKVRELRKIGLGIMGLAQLYIQLGVRYG 549

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           S E  EIA + M  I+  +  AS ELA+ERG + +++ S +
Sbjct: 550 SDEGNEIAQQLMTHINHGSKRASHELAEERGPFEAWEDSKY 590


>gi|305665964|ref|YP_003862251.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
 gi|88710739|gb|EAR02971.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
          Length = 847

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 171/706 (24%), Positives = 288/706 (40%), Gaps = 125/706 (17%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKE-------TEKEKRAVE 341
           F  + L  Q+  ++Y L  + G+  EM P     R+A  ++  E       TEKE     
Sbjct: 26  FKGDDLAAQVWINKYALKDSEGNLYEMNPDDMHYRIAKEISRVEQKYPNPLTEKE----- 80

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFL--TTVPDDLYG-IFGALQENAMLA 394
            Y+L+ +F ++    +   +G  +P     LS+CF+  T    D YG I    QE   L 
Sbjct: 81  VYDLIKNFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGTDGKSDSYGGIMKIDQEQVQLM 139

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +  
Sbjct: 140 KRRGGVGHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSI 198

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E+F+D +   G    +    N +  I D FMK V  N  +T              
Sbjct: 199 NHPDAEDFIDAKMEQG----KVTGANVSVRIDDDFMKAVDNNTNYT-------------- 240

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQ 573
            ++F I  +N          +   +I A  LW K++   +++  P I F D   N   P 
Sbjct: 241 -QKFPIHSDN---------PRFTNEIEANKLWDKIVHNAWKSAEPGILFWDTIINESVPD 290

Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625
            +  + +   S+N C EI L         C L +INL ++       +  F++      I
Sbjct: 291 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVDQPFTKDASFNFPLFKKHI 346

Query: 626 RTAVRVLDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGLM 661
             A R++D++ID+    +                        E  K+     R  G+G+ 
Sbjct: 347 ALAQRIMDDIIDLELEKVDGILEKIMADPELEETKSVEISLWENIKEKAIKGRRTGIGIT 406

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y S EA E + E  + I+  A  ASV  A++RGA+  F      +  F
Sbjct: 407 AEGDMLAALGLRYGSEEANEFSIEVHKNIALEAYRASVHAAKDRGAFEIFDAEREKENPF 466

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E  ++L                +   G RN   + IAPT T + +   +  
Sbjct: 467 ----ILRLKEADEKLYY-------------EMLEYGRRNIALLTIAPTGTTSLMTQTTSG 509

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-----DGSIGNIE 835
           I+P +  +Y  +  ++ +   VN   V+E+   D W+E ++   ++      +G   N  
Sbjct: 510 IEPVFLPVYKRRRKVNPNDKNVNVTFVDEVG--DSWEEYVVFHHRFRQWMEVNGIDTNKS 567

Query: 836 RIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
               +L KI        AT+ ++D +  +      QKW+D + S+ + L  P+  + D +
Sbjct: 568 YSQVELDKIVKKSPYYKATSNDVDWLSKVRLQGGVQKWVDHSISVTINL--PNEVQEDLV 625

Query: 889 ---YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
              Y +AW  G K     R  S + V  S     +  L   P   P
Sbjct: 626 GKLYLEAWKAGCKGVTVYRDGSRSGVLISNEPEAEETLTHFPTKRP 671


>gi|119718033|ref|YP_924998.1| vitamin B12-dependent ribonucleotide reductase [Nocardioides sp.
           JS614]
 gi|119538694|gb|ABL83311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioides sp. JS614]
          Length = 956

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 144/592 (24%), Positives = 259/592 (43%), Gaps = 54/592 (9%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G
Sbjct: 121 ELTWLLVHQYFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILNWYKEEGFIFKGGSG 180

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D
Sbjct: 181 AGLNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 239

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDL 513
           +EEF++ +    D  R   D   A +  DL  K +T    QNA  ++   DE +  + D 
Sbjct: 240 IEEFIETKAREEDKIRALRD---AGFDMDLGGKDITSVQYQNANNSVRVSDEFMRAVED- 295

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F +      R    GE  V  ++ A  L+RK+    +E   P + + D  N     
Sbjct: 296 -GTDFGL------RARKTGE--VIERVDARELFRKISQAAWECADPGLQYDDTINDWHTN 346

Query: 574 QHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRV 631
              G + +SN C+E ++L++SS     CNL S+NLL    ++  FD +  A  +   +  
Sbjct: 347 PETGRITASNPCSEYMSLDNSS-----CNLASLNLLKFLKDDDTFDAELFAKAVEVIITA 401

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +D  I       E   ++   +R +G+G     + L  + + Y S     +A      ++
Sbjct: 402 MDISICFADFPTEAIGRTTVDYRQLGIGYANLGALLMAMGLGYDSDGGRAMAAAITSLMT 461

Query: 692 FHAISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             +   S ELA   G Y+ +  +      +  +     D++  LA    ++  ++ +   
Sbjct: 462 GTSYKRSAELAGVVGPYNGYARNAEAHKRVMRKHQAANDTVRTLAITDSQV--HKLATQA 519

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
           W ++ +   T G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 520 WADVIELGATHGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVN 579

Query: 804 SFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDP 853
             +   LK+        EA+++ +  H    G++   P  L+  H   F+       + P
Sbjct: 580 QTVPRALKKLGYQPEQIEAIVAYIAEH----GHVVDAP-GLRTEHYEVFDTAMGVRSLKP 634

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           M  +   +  Q ++  A S  + L E +  + ++ IY Q+W +GLK T   R
Sbjct: 635 MGHVRMMAAAQPFLSGAISKTVNLPETATVEDVEDIYLQSWKLGLKATAIYR 686


>gi|38639972|ref|NP_943927.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414661|gb|AAQ17704.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 473

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 197/449 (43%), Gaps = 30/449 (6%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET-ALIFSSRTLI 210
           G   +F  K+L  I+  A +G + +    +L+    ++ DG+S  +++  A+ F++  + 
Sbjct: 8   GITENFEPKKLLKILGFATAGTR-IDPNEILNGIMPSITDGMSTKNIQKLAIKFAADRIS 66

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            ++ +Y  V AR  +  +R++V       P     H +           +++G+  + L 
Sbjct: 67  IEQSDYQYVAARLQMYAIRKDVYNQF--DPIHLKRHTLDL---------VQDGIYDKDLA 115

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGL 328
               D +   L   +K++RDF   Y G+    ++Y      +    E PQ  +M VAM L
Sbjct: 116 IKWTDDEFNELNAYIKHDRDFDLAYAGVMQFKEKYLAKDRSTDQIYETPQILYMLVAMCL 175

Query: 329 ALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFG 385
              E T++  +   FY++ S       TP L  +G R P  Q SSC      D+L  I  
Sbjct: 176 HQDEKTDRIAKVKNFYDVTSLGKLSLPTPIL--AGVRTPTRQFSSCVKIESGDELDSINA 233

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
                        G+G +   +R  G+ I     +  G+IPF K       + +QGG R 
Sbjct: 234 TASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQGGVRG 293

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   Y   WH++VE+ L L+ N G +  R   ++    I  LF +R+  +   TLFSPD
Sbjct: 294 GAATLYYPMWHLEVEKILVLKNNKGVEENRIRQLDYGIQINKLFFERLKNDDYITLFSPD 353

Query: 506 -EVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            +  +L+DL+ K+   F+  YE  E +    +    ++I A  L+         TG  + 
Sbjct: 354 VQNGELYDLFYKDPVKFKELYEMLENEPWCRK----KRIKASELFNLFAQERTGTGRIYP 409

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
            F D  N  +P +    +   NLC EI L
Sbjct: 410 MFVDNVNSATPYKE--PIRMGNLCIEIAL 436


>gi|261881174|ref|ZP_06007601.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
 gi|270332043|gb|EFA42829.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
          Length = 857

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 171/709 (24%), Positives = 298/709 (42%), Gaps = 125/709 (17%)

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMG 327
           ++    +D  + A+ LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  
Sbjct: 3   NQKTFSYDEAFEAS-LKY---FDGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIAGE 58

Query: 328 LALKETEKEK--RAVEFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDL-- 380
           +A  E + +    A + + LL  F ++    S  T   +  +   LS+CF+  +  D   
Sbjct: 59  IARIEQKYKNPLSAEDVFGLLDHFRYIIPAGSPMTGIGNNQQVASLSNCFVIGLDGDADS 118

Query: 381 YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           YG I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V 
Sbjct: 119 YGAIMRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVA 178

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+    +   
Sbjct: 179 QDG-RRGALMLSVGIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDAFMEAAVGDK-- 231

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                         Y ++F +         D  +  V ++ISA  LW K++   +++  P
Sbjct: 232 -------------FYMQQFPL---------DAKKPMVEKEISARKLWEKIVHNAWQSAEP 269

Query: 560 WITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
            + F D     S P  +  +     S+N C EI L         C L S+NL ++  N  
Sbjct: 270 GVLFWDTIIRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVKNPF 325

Query: 614 ---NQFDYDKLASTIRTAVRVLDNVID---------------------INC---HTIEKA 646
                FD++K A  ++ A R++D+++D                     + C   H  EK 
Sbjct: 326 TKEASFDFEKFAKHVQLAQRIMDDIVDLEMEKINMILDKVGTDPQNEEVKCTERHLWEKI 385

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++ +   R  G+G+      +  + + Y S EA E + +  + ++ +A  +SV +A ERG
Sbjct: 386 QRKSGMGRRTGVGITAEGDMIAAMGLRYGSEEATEFSVKVHKTLALNAYRSSVTMAAERG 445

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  +         F    +  L E   +L             K  VK  G RN  C+ I
Sbjct: 446 AFEIYDAEREKNNPF----VNRLKEADPQL------------YKDMVKH-GRRNIACLTI 488

Query: 767 APTATIANICGVSQSIDPSYQNLYVK--------SNMSGDFT--VVNSF--LVNELKQRD 814
           APT T + +   +  I+P +  +Y +        +++  DF   V +SF   +   K+  
Sbjct: 489 APTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFL 548

Query: 815 LWDE--AMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            W E   + ++ KY    I   + R P       ATA ++D +  +      QKW+D + 
Sbjct: 549 TWMEVNGIDTNKKYSQEEIDELVARSP----YYKATANDVDWLMKVRMQGAVQKWVDHSI 604

Query: 872 SLNLYL----DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914
           S+ + L    DE    KL   Y +AW  G K  T Y   SRS   V  S
Sbjct: 605 SVTVNLPGNVDEALVNKL---YVEAWRSGCKGCTIYRDGSRSGVMVSVS 650


>gi|90416806|ref|ZP_01224736.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
 gi|90331559|gb|EAS46795.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
          Length = 720

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 190/448 (42%), Gaps = 40/448 (8%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + GI     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +   
Sbjct: 115 VPDSMVGILERNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMC 174

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I + F++ V  
Sbjct: 175 FTVSSAGGRRGAQMATFDVSHPDVFDFVRAKREDG----RLRQFNLSLLITEEFIEAVRN 230

Query: 496 NAGWTLFSP---DEVSDLHDLYG-----KEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  W L  P    E+    DL G     K F      Y         +++  I A  LW 
Sbjct: 231 DGSWDLTFPISAKEIDAGLDLKGDNIVWKPFPTTENYYCNDDGLVACRIYETIRAQKLWN 290

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +++  ++   P     D  N  +       + ++N C E  L         C LGS+NL
Sbjct: 291 AIMSSTYDYAEPGFILIDQVNKNNNNWFCEDIRATNPCGEQPLPPYGS----CLLGSVNL 346

Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                N       FD+++ A  +    R+LDNV++IN   ++  +K     R  G+G +G
Sbjct: 347 TKFVRNPFTKDAYFDWEEYAEVVAVFTRMLDNVVEINGLPLDNQRKEIEYKRRHGMGFLG 406

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715
             S + +L + Y    ++E  D     ++   + A +ELA+E+G        +      L
Sbjct: 407 LGSTITMLQMKYGDEGSLEFTDRIARDMAVAGLKAGLELAREKGPAPIMEDDFEVTAALL 466

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPT 769
           + +     D I     ++ ++ + + S+          EL + +   G R S+  +IAPT
Sbjct: 467 FKRPELAKDGIKAGDSLKGKVLLGKYSKYMQTIATVAPELIESIIEEGCRFSHHSSIAPT 526

Query: 770 ATI----ANICGVSQSIDPSYQNLYVKS 793
            TI    AN   VS  I+PS+ + Y ++
Sbjct: 527 GTISLSLAN--NVSNGIEPSFAHHYARN 552


>gi|167754049|ref|ZP_02426176.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
 gi|167658674|gb|EDS02804.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
          Length = 848

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 153/621 (24%), Positives = 249/621 (40%), Gaps = 111/621 (17%)

Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394
           E + LL  F ++       T   +  +   LS+CF+     P D YG IF   +E   L 
Sbjct: 80  EVFELLDHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L  
Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLTLSI 198

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D + +T     +    N +  I D FM+                      Y
Sbjct: 199 KHPDAERFIDAKVDTS----KVTGANVSVKIDDEFMRAALAGKK---------------Y 239

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            ++F I  +    Q D         I A  LW K++   +++  P + F D     S P 
Sbjct: 240 HQQFPIHSDKPLYQQD---------IDAKKLWDKIIHNAWKSAEPGVMFWDTIIRESIPD 290

Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625
            +        ++N C EI L         C L +INLL++          F+++K    +
Sbjct: 291 CYADEGFTTVATNPCGEIPLCPYDS----CRLLAINLLSYVDKPFTKEASFNFEKFKQHV 346

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A+R++D++ID+    IE                        K +      R  GLG+ 
Sbjct: 347 EKAMRMMDDIIDLELEKIELIINKIAADPEDEDIRRVELELWKKIRTMARKGRRTGLGIT 406

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y +PEA   A +  + ++  A  ASV++A ERGA+  F     ++   
Sbjct: 407 AEGDMLAALGLRYGTPEATAFAVKVQKTLALEAYRASVKMAAERGAFEIFDARKEEKNPM 466

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               IG + E   EL         + E+ K     G RN   + IAPT T + +   +  
Sbjct: 467 ----IGRIREADPEL---------YAEMVKH----GRRNIAMLTIAPTGTTSLMSQTTSG 509

Query: 782 IDPSYQNLYVK----------------SNMSGDFTVVNSFLVNELKQRDLWDEAMISDL- 824
           I+P ++ +Y +                 +M   F   N +  N +K    W EA   D  
Sbjct: 510 IEPVFRPVYKRRRKINPSDQDAKVAFVDDMGEKFEEYNVYHHNFVK----WLEANGYDTS 565

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           K  D S   + R         ATA +ID +  ++     QKW+D + S+ + L ++ S  
Sbjct: 566 KLQDISDDELNRWVAASPYHGATANDIDWVAKVKMQGEIQKWVDHSISVTVNLPNDVSEA 625

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
            +  +YR AW  G K     R
Sbjct: 626 LVADVYRTAWECGCKGVTVYR 646


>gi|2760640|dbj|BAA24243.1| P25 [Leucania separata nuclear polyhedrosis virus]
          Length = 222

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 6/190 (3%)

Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL T+  D + GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L
Sbjct: 19  SCFLLTMESDSIRGIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPML 78

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +V N+    V +    K      L     D+ + L +R+N G +  +  D+  A W+PD+
Sbjct: 79  RVFNNMVRHVIKVASEKAPKQCTLNRGIGDIMDVLHMRRNIGSEDTKARDLMNALWVPDI 138

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +N  W+L  P+E   L+D YG +FE  Y++YE   D+G+ +   ++ AV L R 
Sbjct: 139 FMKRVEENGIWSLMCPNECPKLNDTYGDDFEYWYKHYE---DKGQFR--EQMPAVTLMRN 193

Query: 549 MLTMLFETGH 558
           ++ +  ET H
Sbjct: 194 IIEIQAETAH 203


>gi|311898754|dbj|BAJ31162.1| putative vitamin B12-dependent ribonucleotide reductase
           [Kitasatospora setae KM-6054]
          Length = 964

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 145/581 (24%), Positives = 249/581 (42%), Gaps = 52/581 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT+ PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R 
Sbjct: 144 FSFNSPVWFNVGTQQPQQVSACFILAVDDSMDSILDWYKEEGMIFKGGSGAGLNLSRIRS 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE F++ +  
Sbjct: 204 -SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAFIETKVK 262

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             +  R   D   A +  DL    +T    QNA  ++     V+D       EF  A EN
Sbjct: 263 EEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND-------EFMTAVEN 308

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 R  +  +V   + A AL+RKM    +    P I +    N        G +++S
Sbjct: 309 GGSFGLRARMTGEVIETVDAKALFRKMAEAAWACADPGIQYDSVINHWHTCPESGRINAS 368

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    ++  FD ++ A  +   +  +D  I    
Sbjct: 369 NPCSEYMHLDNSS-----CNLASLNLMKFLRDDDSFDAERFAKVVELVITAMDISICFAD 423

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L      Y S     +A      ++  A   S E
Sbjct: 424 FPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSAGGRALAGAITSLMTGTAYRRSAE 483

Query: 701 LAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTI 756
           LA   G Y  + + +   Q V     D+   +A + D +  +   +   W ++ +     
Sbjct: 484 LAAVVGPYDGYARNAAPHQRVMRQHADASAAVAPLDDLDAPVWAVANDTWADVVRLGARN 543

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  ++P    +  K  +  G   +VN  +   LK+  
Sbjct: 544 GFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPRALKRLG 603

Query: 815 LWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQ 864
             D   EA+++ +  H    GN+   P  LK  H   F+       I PM  +   +  Q
Sbjct: 604 YQDEQVEAVVAHIAEH----GNVIDAP-GLKSAHYEVFDCAMGERSISPMGHVRMMAAIQ 658

Query: 865 KWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 659 PWISGAISKTVNMPEDATVEEVEEIYFEAWKLGVKALAIYR 699


>gi|309789876|ref|ZP_07684454.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
 gi|308228083|gb|EFO81733.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
          Length = 491

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 154/334 (46%), Gaps = 26/334 (7%)

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+NL     + Q  D+D L + +  + R LDNVID N + + +    +   R IGL
Sbjct: 7   CNLGSVNLGLFVTSKQTVDWDNLRTVVHASTRFLDNVIDANHYPLPQIGALSQRIRRIGL 66

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG+   L  + IPYAS EA+ +A E M F+   +  AS ELA+ERG +  ++ S+W  
Sbjct: 67  GVMGWADMLVKMGIPYASDEAIALAREVMAFVDEESKVASEELARERGTFPEWEQSVWGP 126

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                          DE    R         +K      +RN N   +APT TI+ I G 
Sbjct: 127 ---------------DETCARRPDGSRIRPFRK------LRNCNVTTVAPTGTISIIAGC 165

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P +   + +         VN   V +  QR+ W    + +     G I + E +P
Sbjct: 166 SSGIEPLFAIAFWRHQADARMLDVNEQFVAQ-AQREGWYSQELMERIADSGHIHHPE-VP 223

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            +++++  TA +I P W + + +  Q+ +D A S  + + +E +   +   Y  A+ +G 
Sbjct: 224 SEVQRVWTTAHDIAPEWHVRTQAAFQESVDSAISKTINMPNEATPDDVRAAYELAFNLGC 283

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           K     R  S ++   ST  G   K  A P   P
Sbjct: 284 KGITVYRDGSRSNQVLSTGSGEKEK-TAAPAPAP 316


>gi|223937584|ref|ZP_03629487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
 gi|223893747|gb|EEF60205.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
          Length = 1035

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 142/595 (23%), Positives = 241/595 (40%), Gaps = 59/595 (9%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+ +V D++  I       AML KY  G G D +P+R     + G  G+  G 
Sbjct: 198 YPQGSACFIQSVEDNMEDIMHLAYSEAMLFKYGSGTGTDLSPIRSSREKLSG-GGRPSGP 256

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + FLKV +  A  V  GGK R+ A    L  WH D+EEF+D ++          +     
Sbjct: 257 LSFLKVYDQVANVVKSGGKTRRAAKMNTLRDWHGDIEEFIDAKQK--------EEKKAWA 308

Query: 484 WIPDLFMKRVTQNA-GWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            I   F       A G  ++  + +S  + D +    E   E + +       +   K  
Sbjct: 309 LIEQGFDGSYNGEAYGSVMYQNENLSVRVSDAFMTAAEAGTEWWTKSVTGN--RPLEKKD 366

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVC 600
           A  L  K+    +  G P + + D        +    +HS+N C+E + LN+++     C
Sbjct: 367 ANKLMHKIAEGTWICGDPGLQYDDAIQKWHTCKGTEPIHSTNPCSEYVFLNNTA-----C 421

Query: 601 NLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL S+NL+     +  FD ++  + +R  +   + ++D   +  ++  +++H +R +GLG
Sbjct: 422 NLASLNLMKFKREDGVFDVERFKAAVRIYITAQEIIVDNASYPTKQIAENSHIYRTLGLG 481

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                S +    + Y S     +A      ++ HA   S E+A   GA+  +  +     
Sbjct: 482 YANLGSLIMSYGLAYDSDGGRALAGAITAIMTGHAYEQSAEVATSMGAFKGYHDARCAHV 541

Query: 720 VFPI----------------DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             PI                D++  +   R+   +   +R  WD   +R +  G RN+  
Sbjct: 542 SKPIARDNVESMLGVIKLHRDAVEQIQPSREFHYLKEEARKTWDRALERGQKAGYRNAQV 601

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +APT TIA +    +  ++P    + Y      G   +VN  +   L++     EA I
Sbjct: 602 TVLAPTGTIAFLMDCDTTGVEPDIALVKYKLLAGGGLLKLVNRTVPEGLRRLGYGTEA-I 660

Query: 822 SDLKYHDGSIGNIERIPDD-------LKKIHATAFE-----------IDPMWLIESASRR 863
             +  H      IE + D+       L+  H   F+           I  M  ++     
Sbjct: 661 QKIVAHVEKYDTIEDVQDNGQAVSSGLRPEHLEVFDCAFKPYQGKRSIKYMAHLKMMGAA 720

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q +I  A S  + L  E + + +   Y QAW MGLK     R  S  S   +T K
Sbjct: 721 QPFISGAISKTVNLPQECTVEDIRDAYVQAWKMGLKCVAIYRDGSKRSQPLNTKK 775


>gi|163789925|ref|ZP_02184361.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159874865|gb|EDP68933.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 849

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 188/440 (42%), Gaps = 68/440 (15%)

Query: 489 FMKRVTQNAGWTL-------FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           FM+ V  +  + L       +SP+++ +    Y   +    +  E +A    +  +R I 
Sbjct: 379 FMEAVENDTDYELRFPAVESYSPEDMEE----YNAHWSEVGDVREWEASGHAVHTYRTIK 434

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW+ +         P I F D  N  +     G  V ++N C E  L   S    VC
Sbjct: 435 ARELWKLITICATYAAEPGIFFIDNANKMTNAAAYGQKVVATNPCGEQPLAPYS----VC 490

Query: 601 NLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NL ++NL  +A   +   D+ KL  T++  VR+ DNVID   + +   +K     R +GL
Sbjct: 491 NLAAVNLAEMADKESGTIDFAKLKQTVQVGVRMQDNVIDATPYFLADNEKQALGERRVGL 550

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG    L    + Y S E  ++ D+  E I+  A  AS+ELA+ERG+           
Sbjct: 551 GIMGLADLLIYCGVEYGSQEGNQLIDKVFETIAVSAYEASIELAKERGS----------- 599

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTAT 771
             FP     L+ E   E    R   L    +K+  K I       G+RNS+ + +APT +
Sbjct: 600 --FPF----LIGETDAETTNLRERFLQSGYMKQMPKHIHEGVLKYGIRNSHLLTVAPTGS 653

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              + GVS  ++P Y   Y +S   G F  V + +V E              L  H    
Sbjct: 654 TGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEY-------------LDQHP--- 697

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFI 888
              E  PD+L K   +A  + P   ++     Q+WID   S++  ++ P G   +++  I
Sbjct: 698 ---EADPDNLPKQFVSAMSLTPEAHVDVQCTIQRWID--SSISKTVNAPQGYSVEQVQKI 752

Query: 889 YRQAWLMGLK--TTYYLRSR 906
           Y + +  G K  T Y   SR
Sbjct: 753 YERLYKGGAKGGTVYVDGSR 772



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 21/181 (11%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTRH 365
           IE P   F      R A GLA  E+  EKRA     FY  L + +F+ +   L+ +G+  
Sbjct: 123 IEKPLEIFYEQIAKRNATGLAATESTPEKRAAAYATFYEELKNLNFIPAGRVLYGAGSET 182

Query: 366 P-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +C++   VPD   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 183 DVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSG 242

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-----------LRKNTGDD 472
            + +L         V QGG R+GA    L  WH D+ EF+            L +NT DD
Sbjct: 243 AVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLIENTADD 302

Query: 473 R 473
           +
Sbjct: 303 Q 303


>gi|323344465|ref|ZP_08084690.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
 gi|323094592|gb|EFZ37168.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
          Length = 862

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 167/708 (23%), Positives = 295/708 (41%), Gaps = 110/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+  + R+A  +A  E +     +A E + LL
Sbjct: 20  FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMYWRIANEIARIEKKYANPLKAKEIFELL 79

Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    + +   G  H    LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFRYIVPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM     NA         +SD    Y ++F I
Sbjct: 199 LFIDAKMTEG----KVTGANVSVKIDDEFM-----NAA--------ISD--KPYTQQFPI 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
             +N +             ISA  LW K++   +++  P + F D     S P  +  + 
Sbjct: 240 DSKNPQ---------CTNSISAKKLWEKIVHNAWKSAEPGVLFWDTIIRESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L  INL ++  N       FD+D     ++ A R+
Sbjct: 291 FHTVSTNPCGEIPLCPYDS----CRLLCINLYSYVVNPFTKDAYFDFDTFKKHVQIAQRI 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK K  +   R  G+G+      L
Sbjct: 347 MDDIVDLELEKIDKIMEKITIDPQSDEVKGAEYHLWEKIKYKSGLGRRTGVGITAEGDML 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA + +      ++  A  +SV +A+ERGA+  +                
Sbjct: 407 AAMGLRYGTQEATDFSVSVHRALALGAYRSSVTMAKERGAFEVYDAK------------- 453

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              E R+   +      P  EL + +   G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 454 --REERNPFILRLKEADP--ELYRDMVQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG-SIGNI--------ERI 837
            +Y  +  ++ + T V+   V+E+   D ++E ++   K+ +   I  I        E I
Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMRINGIDSTKKYTQEEI 567

Query: 838 PDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
            + + K     ATA ++D +  +      QKW+D + S+ + L +E     ++ +Y +AW
Sbjct: 568 DELVAKSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNEVDEALVNRLYVEAW 627

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             G K     R  S   V  S  K  D K N       +++   LG+P
Sbjct: 628 RSGCKGCTIYRDGSRAGVMISVSKK-DKKKNEDGEAVKDNNMEQLGMP 674


>gi|332664296|ref|YP_004447084.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333110|gb|AEE50211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 865

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 159/681 (23%), Positives = 288/681 (42%), Gaps = 115/681 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L   +  ++Y L  +   I  + P     R+A  +A  E++        E Y L+
Sbjct: 28  FNGDNLAANVWVNKYALKDSFGNIYEKTPDDMHRRIAKEIARIESKYPNPLNEEEAYELV 87

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPDDLYG-IFGALQENAMLAKYSGGLGN 402
            +F ++    S      +  +   LS+CF+     D YG I    +E   L K  GG+G+
Sbjct: 88  RNFKYIVPQGSPMAGIGNNMQVSSLSNCFVIGNFADSYGGIIRTDEEQVQLMKRRGGVGH 147

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   + + H D E+F
Sbjct: 148 DLSHIRPKGSPVMNSALSSTGIVPFMERYSNSTREVAQDG-RRGALMLTVSSKHPDAEDF 206

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +D +   G    +    N +  I D FM+           +P         Y ++F +  
Sbjct: 207 IDAKLEQG----KVTGANVSVRIDDDFMRAAIGG------TP---------YQQQFPVDA 247

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVH- 580
           +N          KV ++I A ALW K++   +++  P + F D     S P  +  + + 
Sbjct: 248 KN---------PKVTKEIDASALWDKIIYNAWKSAEPGVLFWDTVLRESVPDCYADLGYR 298

Query: 581 --SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLD 633
             S+N C EI L+        C L ++NL ++          F+++K A   + A R +D
Sbjct: 299 TISTNPCGEIPLSPYDS----CRLLALNLYSYVEQPFTPEAFFNFEKFAKHAQLAQRFMD 354

Query: 634 NVIDINCH----TIEKAKKSNHTH--------------------RAIGLGLMGFQSALHL 669
           ++ID+        IEK +K                         R  G+G+      L  
Sbjct: 355 DIIDMELEKVDRIIEKIEKDPEARDLKEVEYELWNKVRTACIGGRRTGVGITAEGDTLAA 414

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L   Y S E +E+A +  + ++ +A  ASV++A++RGA+  F     +Q  F    I  L
Sbjct: 415 LGFRYGSDEGIEMAVKIHQSLAVNAYRASVDMARDRGAFPIFDSKREEQNPF----IQRL 470

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           A V   L  +             ++  G RN   + IAPT T + +   +  I+P +   
Sbjct: 471 ASVDPTLYAD-------------MQRYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFMVS 517

Query: 790 YV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH--- 845
           Y  +  ++ +   V    ++E+   D W+E  +   K+ D    N  ++ D++ K++   
Sbjct: 518 YKRRRKVNPNDKEVKVAFIDEVG--DHWEEYNVFHHKFLDWLQQNGYQV-DEVTKMNAEE 574

Query: 846 ------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF---IYR 890
                       ATA ++D +  ++     QKW+D   S+++ ++ P    +D    IY+
Sbjct: 575 LQPIIEKSPYHKATANDVDWVQKVKMQGAIQKWVD--HSISVTVNVPEDTSVDMVKRIYQ 632

Query: 891 QAWLMGLKTTYYLRSRSATSV 911
            AW +G K     R  S + V
Sbjct: 633 TAWEVGCKGCTIYRDGSRSGV 653


>gi|76802311|ref|YP_327319.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76558176|emb|CAI49764.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
          Length = 1042

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 146/606 (24%), Positives = 236/606 (38%), Gaps = 126/606 (20%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A  F   + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 143 EATADAFQEQMESLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQ 202

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 203 SGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRIS 262

Query: 456 HIDVEEFL-----------DLRKNTGDD-------------------------------R 473
           H DV +F+            LR N  DD                                
Sbjct: 263 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALEEARELIDEDGKVPKHLRNAVE 322

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524
               + N +  + D FM+ +     +T  +P          E  +L+D++G         
Sbjct: 323 GHLSNFNISVGVTDGFMEALKNGEEFTFTNPRTDEPHIATPETKELYDMFGL-------- 374

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG-VVH 580
                D  E+     I A  LW  M+    E G P + + +  N       ++H    + 
Sbjct: 375 ----GDHVEVGEELSIPATKLWEHMIEGAHENGEPGVIYLERVNKEHSFDVEEHPDHQIL 430

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFA 612
           ++N C E  L    EE   CNLG INL                            +  F 
Sbjct: 431 ATNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWYDEHGDDYETLADAVDAFL 486

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D++ L   I    R L+NV+ ++   ++K ++     R IGLG+MG       L I
Sbjct: 487 EEAIDFEALDGRIELGTRFLENVVTMSDFPVDKIEQKVREMRKIGLGVMGLAQLYIQLGI 546

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S E  E+A + M  I+  +   S ELA+ERG +       WD+  +        AE 
Sbjct: 547 KYGSEEGNEVARQLMRHINHGSKWTSHELAEERGVFDE-----WDKSKY-----ANPAEY 596

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           R+     + + L  DE         +RN N   IAPT T + +   +   +P Y   Y K
Sbjct: 597 RE--WFEKQTGLDADEW---ADGFAIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYK 651

Query: 793 S---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDL 841
           +   ++ GD  +V  + + +  L++  L  EA+  + +        DG I  +  +PD +
Sbjct: 652 NVSDDVQGDEMLVEFDDYFLRVLEENGLDVEAVKEEAQEQMATNEFDG-IDGLSTVPDAI 710

Query: 842 KKIHAT 847
            ++  T
Sbjct: 711 GELFVT 716


>gi|318059580|ref|ZP_07978303.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actG]
 gi|318075430|ref|ZP_07982762.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actF]
          Length = 959

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 131 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 189

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 190 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 248

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 249 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 305

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 306 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 356

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 357 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 411

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       EK  ++    R +G+G     + L      Y S     +A      +
Sbjct: 412 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 471

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   + V     D+ G+   + D +  +   +   W
Sbjct: 472 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 531

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 532 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 590

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 591 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 649

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 650 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 697


>gi|304321238|ref|YP_003854881.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303300140|gb|ADM09739.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 1196

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 149/595 (25%), Positives = 237/595 (39%), Gaps = 131/595 (22%)

Query: 365 HPQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           +PQ  +CF+ +V D L G   IF      A L KY  G G++++ +RG    + G  GKS
Sbjct: 177 YPQPHACFIQSVSDSLVGENGIFDLWSREARLFKYGSGSGSNFSAIRGEDEPLAG-GGKS 235

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD---------------- 464
            G+I FLKV +  A A+  GG  R+ A    L+  H D+E F+D                
Sbjct: 236 SGLISFLKVGDTAAGAIKSGGITRRAAKMVVLDIDHPDIENFIDWKVKEEQKVAALVTGS 295

Query: 465 -------------LRKNTGDDR---------RRTHDMNTANWIPDLFMKRVTQNA----- 497
                        +++   DDR         RR       + +PD  + R    A     
Sbjct: 296 LVTKRHVEAMFAAIKRGDEDDRLDPTRNEILRRVMKAARRDGVPDGIIGRALSLAASGRT 355

Query: 498 ---------GWT-----LFSPDEVSDLHDLYGKEFEIAYENYE-----RQADRGEIKVFR 538
                    GW        S    ++   L G EF +A ++ +     R+ D G   V +
Sbjct: 356 EMPLDVYTVGWDDEAYRTVSGQNANNSIRLTG-EFLVAVDDDQQWPLTRRTDGG---VHK 411

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEET 597
            +SA ALW K+    + +  P + F D  N        G + +SN C+E + LN ++   
Sbjct: 412 SVSARALWEKIGEAAWASADPGLQFHDTINDWHTCPMDGDIEASNPCSEYMFLNDTA--- 468

Query: 598 AVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             CNL SINLLA    + + D D L  TIR    VL+  + +  +   +  + ++ +R +
Sbjct: 469 --CNLASINLLAFLQEDGELDLDGLIHTIRLWTIVLEISVGMASYPDARIAQRSYDYRTL 526

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG       L    +PY S      A      ++  A   S +LA   G +  F  +  
Sbjct: 527 GLGFANLGGLLMSAALPYDSDRGRAAAGALSALMTAIAYKTSADLAARLGPFPRFDANKE 586

Query: 715 --------------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
                                      +D+G  P    GL+A           +   WDE
Sbjct: 587 AVLRVMRNHRAALTGDDFDDLSVTPPRFDEGAVPF--AGLVA----------AASSAWDE 634

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
              + +  G+RN+   AIAPT TI  +    +  I+P +  +  K  ++G  TV    L+
Sbjct: 635 AISKAERSGVRNAQVTAIAPTGTIGLVMDCDTTGIEPDFALVKFK-QLAGGGTVR---LI 690

Query: 808 NELKQRDL----WDEAMISDLKYHDGSIGNIERIP----DDLKKIHATAFEIDPM 854
           N+   R L    + +  I ++K      G+++  P    DDL++   +  EID +
Sbjct: 691 NQSVPRALARLGYTDQQIREIKAFAVGHGSLDHAPGVSFDDLRREGFSDREIDKL 745


>gi|311694338|gb|ADP97211.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 714

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 140/572 (24%), Positives = 240/572 (41%), Gaps = 68/572 (11%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 106 TVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDRM 165

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I + F++ V 
Sbjct: 166 CFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKREDG----RLRQFNLSLLITEDFIEAVR 221

Query: 495 QNAGWTLFSP-------DEVSDLHDLYGKEFEIAYENYERQAD---RGEIKV----FRKI 540
            +A W L  P       DE  DL D    E +  Y ++  Q      GE KV    +R +
Sbjct: 222 NDADWHLSFPVTKKEVEDEKLDLSD----ESQFVYRDFPEQKGYVVNGEGKVACRIYRTL 277

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  +W  ++T  ++   P     D  N  +       + ++N C E  L         C
Sbjct: 278 KAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPYGS----C 333

Query: 601 NLGSINLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGS+NL       F +   F+Y+K    +    R+LDNV++IN   + + +      R 
Sbjct: 334 LLGSVNLTMFVDYPFTDKASFNYEKYRKVVAIFTRMLDNVVEINGLPLAEQRHEITYKRR 393

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------Y 708
            G+G++G  S L +L +PY S E+V+  +E +  ++      S+ LA+E+G        +
Sbjct: 394 HGMGILGLGSTLAMLRMPYGSEESVQFTEEVVREMAVEGWRQSLALAEEKGVAPIMDDEF 453

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI------GMRNSN 762
                 L        D   L  +V+  +   + S+   +  K   K +      G R ++
Sbjct: 454 EITPKMLTKCPQLSEDGYKLGDKVKGRILHAKYSKYMQEIAKVEPKLVEELAEKGGRFTH 513

Query: 763 CMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             +IAPT TI    AN    S  I+PS+ + Y +           + +    K ++  D 
Sbjct: 514 HTSIAPTGTISLSLAN--NASNGIEPSFSHHYAR-----------NIIREGRKTKEKVDV 560

Query: 819 AMISDLKY-HDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWIDQ--AQS 872
                L Y H  + G +    D+ KK+ A   T+ ++ P   ++  +  QKW+D   +++
Sbjct: 561 FSFELLAYRHMVNPGAMPFSEDEDKKLPAYFTTSDDVTPSQHVDIQAAAQKWVDSSISKT 620

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            N+  D       D IY  A+  GLK     R
Sbjct: 621 ANVPTDFAYQDFKD-IYLYAYDKGLKGCTTFR 651


>gi|300726805|ref|ZP_07060235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
 gi|299775918|gb|EFI72498.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
          Length = 861

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 166/718 (23%), Positives = 300/718 (41%), Gaps = 117/718 (16%)

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGL 328
           + M  FD  +    LKY   F  + L  ++  ++Y +  +   I  + P     R+A  +
Sbjct: 4   QKMYTFDEAF-EESLKY---FDGDQLAARVWVNKYAMKDSFGHIYEKSPLEMHWRIANEV 59

Query: 329 ALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--Y 381
           A  E + +    A E ++LL  F ++    + +   G  H    LS+CF+  +  D   Y
Sbjct: 60  ARIEKKYKNPLSAQEIFDLLDHFRYIVPAGSPMTGIGNTHQVASLSNCFVIGLDGDADSY 119

Query: 382 G-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           G I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q
Sbjct: 120 GAIMRIDEEQVQLMKRRGGVGHDLSHIRPAGSPVNNSALTSTGIVPFMERYSNSTREVAQ 179

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+R GA+   +   H D E F+D +   G    +    N +  I D FM+   ++  + 
Sbjct: 180 DGRR-GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDEFMRCAIEDEPYR 234

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
              P     +HD+                      V ++ISA  LW K++   +++  P 
Sbjct: 235 QQWP-----IHDV-------------------NPSVVKQISARKLWDKIVHNAWKSAEPG 270

Query: 561 ITFKDPCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613
           I F D     S P  +  +     S+N C EI L         C L SINL ++  N   
Sbjct: 271 ILFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVENPFT 326

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAK 647
               F+YD     ++ A R++D+++D+                          H  EK K
Sbjct: 327 PQASFNYDLFKKHVQLAQRIMDDIVDLEMEKIDLIMNKIDKDPQLEEVKGAEYHLWEKIK 386

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + +   R  G+G+      +  + + Y + EA + +    + ++ +A  +SV LA+ERGA
Sbjct: 387 RKSSLGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHKTLALNAYRSSVNLAEERGA 446

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  +                E ++   +      P   L   +   G RN  C+ IA
Sbjct: 447 FEIYDAN---------------REAKNPFILRIKEADP--ALYADMVKYGRRNIACLTIA 489

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT T + +   +  I+P +  +Y  +  ++     V+   V+E+   D ++E ++   K+
Sbjct: 490 PTGTTSIMTQTTSGIEPVFMPVYKRRRKVNPTDKDVHVDFVDEVG--DSFEEYIVYHKKF 547

Query: 827 HD-----GSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            +     G   N     D++ ++        ATA ++D +  ++     QKW+D + S+ 
Sbjct: 548 VEWMKINGFDVNKRYSQDEINELVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVT 607

Query: 875 LYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVP 927
           + L     + L + +Y +AW  G K  T Y   SRS    S  KS  K  + +  A P
Sbjct: 608 VNLPNDVDESLVNRLYVEAWKSGCKGCTIYRDGSRSGVMISASKSEKKEAEKQGTADP 665


>gi|70915525|ref|XP_732202.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502850|emb|CAH78399.1| hypothetical protein PC001041.02.0 [Plasmodium chabaudi chabaudi]
          Length = 182

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 7/168 (4%)

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + DF + +   L  ++ Y RDF ++Y G + L   Y L IN   IE PQ 
Sbjct: 17  GRPASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQH 76

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D
Sbjct: 77  LLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKSD 133

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            + GIF  L++ A+++K +GG+G     +R   ++I GTNG S G++P
Sbjct: 134 SIEGIFETLKQCALISKTAGGIGVAVQDIRAQNSYIRGTNGISNGLVP 181


>gi|333024021|ref|ZP_08452085.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
 gi|332743873|gb|EGJ74314.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
          Length = 921

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 93  YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 151

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 152 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 210

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 211 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 267

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 268 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 318

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 319 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 373

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       EK  ++    R +G+G     + L      Y S     +A      +
Sbjct: 374 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 433

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   + V     D+ G+   + D +  +   +   W
Sbjct: 434 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 493

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 494 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 552

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 553 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 611

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 612 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 659


>gi|302522306|ref|ZP_07274648.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
 gi|302431201|gb|EFL03017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
          Length = 965

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 248/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 137 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAG 195

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 196 LNLSRIRS-SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 254

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 255 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK 311

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 312 -FGL------RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPES 362

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 363 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVIT 417

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       EK  ++    R +G+G     + L      Y S     +A      +
Sbjct: 418 AMDISICFADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLM 477

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   + V     D+ G+   + D +  +   +   W
Sbjct: 478 TGTAYRRSAELAAVVGPYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAW 537

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 538 QDVLRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 596

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 597 GTVPQALRRLGYQEEQIEAIVAHIAENGNVVDAP-ALKPEHYEVFDCAMGDRAISPMGHV 655

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 656 RMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 703


>gi|219556406|ref|ZP_03535482.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis T17]
          Length = 413

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 161/380 (42%), Gaps = 52/380 (13%)

Query: 260 IEEGVKARLLHESMMDFDLVYL-----------ANDLKYERD-FAFEYLGLQILYDRYFL 307
           I++ V+ARL    + D   VY+           A  L   RD        + +L +RY L
Sbjct: 64  IQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLL 123

Query: 308 HINGSRIEMPQAFFM-RVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNS 361
           H    R        M R A  +A  E + E     + A  F  LL +  F+ ++PTL NS
Sbjct: 124 HDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNS 183

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G +
Sbjct: 184 GTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N 
Sbjct: 244 SGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNL 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D F++ V +N    L +P                              K+  ++ 
Sbjct: 301 SVGVTDAFLRAVERNGLHRLVNPRTG---------------------------KIVARMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+  +       G P + F D  N  +P    G + ++N C E+ L         CN
Sbjct: 334 AAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CN 389

Query: 602 LGSINLLAHFANNQFDYDKL 621
           LGSINL    A+ + D+D+L
Sbjct: 390 LGSINLARMLADGRVDWDRL 409



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A         +R +   D        TV + +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA---------AREVACDD---PDMPGTVAKAVADALG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++
Sbjct: 56  RGIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKA 99


>gi|325270011|ref|ZP_08136619.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
 gi|324987596|gb|EGC19571.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
          Length = 868

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 159/685 (23%), Positives = 290/685 (42%), Gaps = 115/685 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A E ++LL
Sbjct: 23  FGGDELAARVWVNKYAVKDSHGNIYEKSPEQMHWRIANEIARIERKYKNPLTAQEVFDLL 82

Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    + +   G  H    LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 83  DHFRYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAILHIDEEQVQLMKRRGGV 142

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 143 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 201

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+    +  +                ++F I
Sbjct: 202 AFIDAKMEEG----KVTGANVSVKLTDEFMQAAIDDRPFV---------------QQFPI 242

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D  E    + +SA ALW K++   +++  P + F D     S P  +  + 
Sbjct: 243 ---------DSREPMSAKTVSARALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 293

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L S+NL ++  +      +FD+D  +  ++ A R+
Sbjct: 294 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARFDFDLFSRHVQLAQRI 349

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK K+ +   R  G+G+      +
Sbjct: 350 MDDIVDLELEKIELIMEKIRRDPQSDEVKQTEYHLWEKIKEKSGKGRRTGVGITAEGDMI 409

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA + A      ++ +A  +SV +A+ERGA++ +         F    I 
Sbjct: 410 AAMGLRYGTQEATDFAVSVHRTLALNAYRSSVTMAKERGAFAIYDADREAHNPF----IN 465

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E   +L         ++++++     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 466 RLREADPQL---------YEDMRR----CGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 512

Query: 788 NLYVK--------SNMSGDFT--VVNSFLVNELKQRDL--WDEAMISDL--KYHDGSI-G 832
            +Y +        +++  DF   V +SF    +  R    W EA   D   +Y    I G
Sbjct: 513 PVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEANGIDTRKRYTQEEIDG 572

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
            ++R P       ATA ++D +  +      QKW+D + S+ + L     + L + +Y +
Sbjct: 573 LVKRSP----YYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNQVDEALVNKLYVE 628

Query: 892 AWLMGLK--TTYYLRSRSATSVEKS 914
           AW  G K  T Y   SRS   +  S
Sbjct: 629 AWRSGCKGCTIYRDGSRSGVMISVS 653


>gi|120554013|ref|YP_958364.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
 gi|120323862|gb|ABM18177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
          Length = 712

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 149/635 (23%), Positives = 264/635 (41%), Gaps = 76/635 (11%)

Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFL 373
           A + RVA  LA  E +  ++K   EF   L +        T       H   +S   C +
Sbjct: 42  ATYERVAKALAEVEKKNLRDKYMKEFLWALQNGAIPAGRITSNAGAEAHKPATSTINCTV 101

Query: 374 T-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + T+ D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +
Sbjct: 102 SGTIQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDIFD 161

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                V+  G R+GA  A  +  H DV EF+  ++  G    R    N +  I + F++ 
Sbjct: 162 RMCFTVSSAGGRRGAQMATFDVHHPDVIEFIQAKREDG----RLRQFNLSLLITEDFIEA 217

Query: 493 VTQNAGWTLFSP-------DEVSDLHDLYGKEFEIAYENYERQA-----DRGEI--KVFR 538
           V     W L  P       DE  DL D      +  Y ++  Q      + G++  ++++
Sbjct: 218 VRNGDDWHLSFPVTQKEADDEGLDLTDAS----QFVYRDFPVQEGYVVNNEGKVACRIYK 273

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  +W  ++T  ++   P     D  N  +       + ++N C E  L        
Sbjct: 274 TVKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPYGS--- 330

Query: 599 VCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL             F+Y+K    + T  R+LDNV++IN   + + +      
Sbjct: 331 -CLLGSVNLTKFVEYPFTEKASFNYEKYRKVVGTFTRMLDNVVEINGLPLGEQRHEITYK 389

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R  G+G++G  S L +L +PY S E+V+  +E +  ++      S+ LA+E+G       
Sbjct: 390 RRHGMGILGLGSTLAMLRMPYGSDESVKFTEEVVREMAVEGWRQSLALAEEKGPAPIMDD 449

Query: 714 -------------SLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
                         L + G+   D + G +   +    M R + +   EL  ++   G R
Sbjct: 450 EFEVTPKMMTKCPKLAEDGIKVGDKVKGKVLHAKYSAYMGRIAEVE-PELVAKLAEKGGR 508

Query: 760 NSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            ++  +IAPT TI    AN    S  I+PS+ + Y +           + +    K ++ 
Sbjct: 509 FTHHTSIAPTGTISLSLAN--NASNGIEPSFSHHYAR-----------NIIREGRKTKEK 555

Query: 816 WDEAMISDLKY-HDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWIDQ-- 869
            D      L Y H  + G +    D+ KK+ +   T+ ++ P   ++  +  QKW+D   
Sbjct: 556 VDVFSFELLAYRHLVNPGAMPFSEDEDKKLPSYFTTSDDVTPTQHVDIQAAAQKWVDSSI 615

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +++ N+  + P     D IY  A+  GLK     R
Sbjct: 616 SKTANVPTEFPYQDFKD-IYLYAYDKGLKGCTTFR 649


>gi|325860121|ref|ZP_08173247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
 gi|325482406|gb|EGC85413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
          Length = 865

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 157/687 (22%), Positives = 289/687 (42%), Gaps = 119/687 (17%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A E ++LL
Sbjct: 20  FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    +       H Q   LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 140 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +  +                ++F I
Sbjct: 199 AFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFV---------------QQFPI 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D     V + +SA  LW K++   +++  P + F D     S P  +  + 
Sbjct: 240 ---------DARAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L S+NL ++  +       FD+D  +   + A R+
Sbjct: 291 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRI 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK ++ +   R  G+G+      +
Sbjct: 347 MDDIVDLEMEKIDLIMEKIKHDPQSEEVKYAEYHLWEKIREKSGKGRRTGVGITAEGDMI 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA + +      ++ +A  ASV +AQERGA+  +     +   F    I 
Sbjct: 407 AAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGAFGIYDAKREENNPF----IN 462

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E   +L         ++++KK     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 463 RLKEADAKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH- 845
            +Y  +  ++ + T V+   V+E+   D ++E ++    YH   +  +E    D +K + 
Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHHKFLTWMEVNGIDTRKRYT 563

Query: 846 ---------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
                          ATA ++D +  +      QKW+D + S+ + L     ++L + +Y
Sbjct: 564 QEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLY 623

Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKS 914
            +AW  G K  T Y   SRS   +  S
Sbjct: 624 VEAWRSGCKGCTIYRDGSRSGVMISVS 650


>gi|15078798|ref|NP_149548.1| 085L [Invertebrate iridescent virus 6]
 gi|82013365|sp|O55716|RIR1_IIV6 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit;
           Contains: RecName: Full=IIV-6 RIR1 intein
 gi|2738400|gb|AAB94427.1| 085L [Invertebrate iridescent virus 6]
          Length = 959

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 167/362 (46%), Gaps = 75/362 (20%)

Query: 572 PQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           P  H GV +   +  C+EI L + S  TAVC L S+NL   + +   D D     I+  +
Sbjct: 596 PINHAGVFNGILTGQCSEIILPTDSTRTAVCCLSSLNL--EYYDEWKDNDLF---IKDVM 650

Query: 630 RVLDNVIDINCH----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +LDN + I       TI +A  S    R+IG+G++GF S L   +I + S EA ++  +
Sbjct: 651 EMLDNALTIFIEKAPPTISRAVNSAKKERSIGIGVLGFHSFLQQKNISFESDEAAKLNID 710

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
               +     + ++ L   RG+              P D+ G                  
Sbjct: 711 IFTKLRSKIDTFNLVLGSLRGS--------------PEDAEG------------------ 738

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G R    MA+APTAT + I G  S S++P   N Y +  +SG F   N 
Sbjct: 739 ----------TGRRFCCTMAVAPTATSSIIMGNTSPSVEPFRANAYRQDTLSGSFLNKNR 788

Query: 805 FLVNELKQR-------DLWDEAMISDLKYHDGSIGNIERIPDDL-----KKIHATAFEID 852
           +L   L QR       ++W   +         + G+++++P++L     K++  TAFEI+
Sbjct: 789 YLSRILSQRLNVKEINEVWSNIV--------SNGGSVQQLPNNLLSEQEKQVFKTAFEIN 840

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSV 911
             W+I+ A+ RQK+IDQ+QS+NL+L     K+ L  ++  AW  GLKT YYLRS      
Sbjct: 841 QKWVIKHAADRQKYIDQSQSINLFLKPDIHKRELHSLHLNAWKSGLKTLYYLRSEKIADA 900

Query: 912 EK 913
           +K
Sbjct: 901 DK 902



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 122/307 (39%), Gaps = 54/307 (17%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD  F+ LGL+ L + Y +    S    PQ  F  V   +       ++     Y   S 
Sbjct: 10  RDSKFDELGLKRLRESYMMREETS----PQERFAYVCKQVGTDRDHSQR----LYEYTSK 61

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                STP L      H    SC+L+ + D   G+   L E   L+   G          
Sbjct: 62  HWLSLSTPILSFGKANHGLPISCYLSWIEDTKEGLIDTLSEVNQLSMLGG--------GV 113

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  I  ++ KS GV+  L   +  ++A  Q G R+G+   YL   H DV +F+++RK 
Sbjct: 114 GVGVGIRTSDNKSTGVMSHLNTYDACSLAYKQDGVRRGSYAMYLNNNHPDVLQFIEMRKP 173

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAG-------WTLFSPDEVSDLHDLYGKEFEIA 521
           TGD   R  +++    I D FM+ + +  G       W L  P                 
Sbjct: 174 TGDHNIRCLNLHHGLNISDEFMELIEKCDGGGNIDDTWNLIDP----------------- 216

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV- 578
                        K    + A  LW+++L    +TG P+I F D CN  +   Q+  G+ 
Sbjct: 217 -----------HTKKITTVGARDLWQRILETRMKTGEPYICFIDTCNKHMYDFQKKKGLT 265

Query: 579 VHSSNLC 585
           +  SNLC
Sbjct: 266 IKQSNLC 272


>gi|60683069|ref|YP_213213.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|60494503|emb|CAH09300.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|301164584|emb|CBW24143.1| putative ribonucleoside reductase [Bacteroides fragilis 638R]
          Length = 882

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 147/644 (22%), Positives = 265/644 (41%), Gaps = 105/644 (16%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394
           + + L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L 
Sbjct: 108 QLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLM 167

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 168 KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 226

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  + D FM    +   +T   P          
Sbjct: 227 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP---------- 272

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
                          D       ++I A  LW+K++   +++  P + F D     S P 
Sbjct: 273 --------------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPD 318

Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  + +   S+N C EI L         C L +INL ++  N       FD+D     +
Sbjct: 319 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHV 374

Query: 626 RTAVRVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLM 661
             A R++D++ID+    IE+           ++  HT R +              G+G+ 
Sbjct: 375 ALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGIT 434

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y + EA E +++  + ++  A  +SV++A+ERGA+  +         F
Sbjct: 435 AEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF 494

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E    L         ++++KK     G RN  C+ IAPT T + +   +  
Sbjct: 495 ----INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSG 537

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832
           I+P +  +Y  +  ++ + T V    V+E    D ++E ++   K+        +D +  
Sbjct: 538 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKR 595

Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
             +   D+L        AT+ ++D +  +    + QKW+D + S+ + L     ++L + 
Sbjct: 596 YTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNR 655

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +Y +AW  G K     R  S + V  S     D K    P   P
Sbjct: 656 LYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 699


>gi|322372257|ref|ZP_08046798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
 gi|320548266|gb|EFW89939.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
          Length = 1028

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 154/673 (22%), Positives = 261/673 (38%), Gaps = 147/673 (21%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF +L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+
Sbjct: 148 EFGDLMEGLSFIPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAEVFQSGGGM 207

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV 
Sbjct: 208 GYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVI 267

Query: 461 EFL-----------DLRKNTGDDRRRTH-------------------------------D 478
           +F+            LR N  DD   T                                +
Sbjct: 268 QFIHAKNKDVSLANTLRLNDPDDYTHTSFKEALEEARELIDDDGRVPKHLRNAAEGHLSN 327

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYENYERQA 529
            N +  + D FM+ +  +  +   +P         +   +++D++G    +         
Sbjct: 328 FNISVGVTDDFMEALYNDEEFVFTNPRTEEPHVATEHTKEMYDMFGLGDYVT-------- 379

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--------S 581
             GE+     I A  LW +++   +E G P I + +  N    +QH   V         +
Sbjct: 380 -PGEV---LSIPAKVLWDRIVEGAWENGEPGIIYLERVN----KQHSFDVEKHPDHRILA 431

Query: 582 SNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFAN 613
           +N C E  L    EE   CNLG INL                            +  F  
Sbjct: 432 TNPCGEQPL----EEYEACNLGHINLSTLADLDAPDWRVWYDENGDNYGSLSEAVDAFLR 487

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D+++    I    R L+NV+ ++   +EK ++     R IGLG+MG       L + 
Sbjct: 488 EGIDWEEFDHRIEYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGIMGLAQLYIQLGVR 547

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S E  EIA + M  I+  +  AS ELA+ERG+++ ++ S +                 
Sbjct: 548 YGSEEGNEIAKQLMTHINHESKWASHELAEERGSFNDWEDSKY----------------- 590

Query: 734 DELAMNRTSRLPWDE------LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                N T    W E       +K      +RN N   IAPT T + +   +   +P Y 
Sbjct: 591 ----ANPTEYAEWFEKQTGLDAEKWKDGFAVRNHNTTTIAPTGTTSMVGNTTGGCEPIYN 646

Query: 788 NLYVKS---NMSGDFTVV--NSFLVNELKQRDL-----WDEAMISDLKYHDGSIGNIERI 837
             Y K+   ++ GD  +V  + + +  L+  D+      +EA           +  +E +
Sbjct: 647 VAYYKNVSDDVQGDEMLVEFDDYFLRTLEANDIDVDAVKEEAQTQMANNEFSGVEGLETV 706

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
           PD + ++     ++            Q+ +D A S    + +  S + +D +YR  +  G
Sbjct: 707 PDAIGELFVVTGDLTGKQHAAVQCSCQQGVDSAISKTCNFPNSASKEDMDEVYRYIYDHG 766

Query: 897 LK--TTYYLRSRS 907
            K  T Y   +RS
Sbjct: 767 GKGVTVYRDGTRS 779


>gi|88800235|ref|ZP_01115803.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
 gi|88777081|gb|EAR08288.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
          Length = 716

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 150/633 (23%), Positives = 265/633 (41%), Gaps = 69/633 (10%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGT--RHPQLSSCFL 373
           +A F RVA  L+  E  K K+       L +     + +   + N+G     P  S+   
Sbjct: 44  EATFARVAEALSSVEKNKAKKKEWHEKFLWALENGAIPAGRIVSNAGALEHKPATSTINC 103

Query: 374 T---TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           T   T+ D + GI   + E  +  K   G+G +++ +R   A + G    + G + F+ +
Sbjct: 104 TVSGTIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKNAFVSGAGAYTSGPLSFMDI 163

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +     V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   FM
Sbjct: 164 YDKMCFTVSSAGGRRGAQMATFDVSHPDVVDFIRAKREDG----RLRQFNLSLLITMEFM 219

Query: 491 KRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYE-----RQADRGEI--KVFRK 539
           + V  +  W L  P    + + D  D+   E ++ ++++       Q D+GEI  +V+R 
Sbjct: 220 EAVKNDTDWPLVFPVSEAEVLRDGLDVNNPE-QVIWKDWHVKDPYLQNDKGEIACRVYRI 278

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW  ++T  ++   P     D  N  +       + ++N C E  L         
Sbjct: 279 IKARNLWNVIMTSTYDYAEPGFILIDKVNEYNNNWFCETIRATNPCGEQPLPPYGS---- 334

Query: 600 CNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           C LGS+NL          N +F++DK    +R   R+LDNV++IN   + + +      R
Sbjct: 335 CLLGSVNLTRFVEDPFTENAKFNWDKFHEVVRIFTRMLDNVVEINGLPLPEQRDEITRKR 394

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711
             G+G +G  S + +L + Y    +V   +E  + ++      +++LA+E+G        
Sbjct: 395 RHGMGYLGLGSTITMLRMKYGDEASVAFTEEVTKAMALAGWETALDLAKEKGPAPIMEEE 454

Query: 712 ----------KGSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                     +  L   G    D + G +   +    M + + +   EL   +  +G R 
Sbjct: 455 FEITHEMVRKRPELLKDGYQVGDKLPGRILHAKYSRYMQQINDIA-PELVDELAKVGARF 513

Query: 761 SNCMAIAPTATIA-NIC-GVSQSIDPSYQNLYVKSNMSGDFTV---VNSFLVNELKQRDL 815
           ++  +IAPT TI+ +I    S  I+PS+ + Y ++ +         V+ F    L  R L
Sbjct: 514 THHSSIAPTGTISLSIANNASNGIEPSFAHHYSRNVIRAGKKSKEKVDVFSFELLAYRKL 573

Query: 816 W-DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             D+AM     Y D       ++PD       T+  ++P   ++  +  Q WID   S++
Sbjct: 574 VNDKAM----PYSDEPEA---QLPD----YFITSDSVEPKQHVDIQAASQIWID--SSIS 620

Query: 875 LYLDEPSGKKLDF---IYRQAWLMGLKTTYYLR 904
              + P+    D    IY  A+  GLK     R
Sbjct: 621 KTANVPTDYAFDSFKDIYLYAYEQGLKGCTTFR 653


>gi|254482169|ref|ZP_05095410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
 gi|214037494|gb|EEB78160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
          Length = 707

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 139/621 (22%), Positives = 261/621 (42%), Gaps = 67/621 (10%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           ++ D + GI     E  +  K   G+G +++ +R  GA + G    + G + F+ + +  
Sbjct: 110 SITDSMEGILQKNLEAGLTLKAGCGIGYEFSTLRPRGAFVSGAGAYTSGPMSFMDIFDKM 169

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I + F+  V 
Sbjct: 170 CFTVSSAGGRRGAQMATFDVHHPDVFDFVKAKREDG----RLRQFNLSLLITEDFINAVK 225

Query: 495 QNAGWTL---FSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           ++  W L    +P E ++L      ++  + F +       +  +   +V+++I A+ LW
Sbjct: 226 EDGEWPLSFPVTPKEFANLELDPEQEVVWRSFPVTDGYVTNEQGQVACRVYQRIRAIKLW 285

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +++  ++   P     D  N ++       V ++N C E  L         C LGS+N
Sbjct: 286 NAIMSSTYDYAEPGFILIDEVNKKNNNWFCENVRATNPCGEQPLPPYGS----CLLGSVN 341

Query: 607 LLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L       F +   FD+++    +    R+LDNV++IN   +E+ ++   + R  G+G +
Sbjct: 342 LTRFVREPFTDKAHFDWEEYREVVAVFTRMLDNVVEINGLPLEQQRQEITSKRRHGMGFL 401

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGS 714
           G  S L +L + Y   +++E  +E  + ++       ++LA+E+GA       +      
Sbjct: 402 GLGSTLTMLQMKYGEEDSLEFTEEVSKQMAVSGWKIGLDLAREKGAAPIMDEEFEVTGEM 461

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRVKTIGMRNSNCMAIAP 768
           L  +     D I L  ++  ++  ++ S       L   EL   +   G R ++  +IAP
Sbjct: 462 LRRRPEMAADGIKLGDKLPGKVLHSKYSHYMQALALEEPELVNSIIQEGARFTHHSSIAP 521

Query: 769 TATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-RDLWDEAMISD 823
           T TI    AN    S  I+PS+ + Y ++            ++ E K+ ++  D      
Sbjct: 522 TGTISLSLAN--NASNGIEPSFAHHYSRN------------VIREGKKSKEKVDVFSFEL 567

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAF----EIDPMWLIESASRRQKWIDQ--AQSLNLYL 877
           L Y +   G+   + DD  K     F     + P   ++  S  QKW+D   ++++N+  
Sbjct: 568 LAYRELVNGDAMPLTDDESKKLPDYFIASDNVTPRQHVDVQSAAQKWVDSSISKTINVPT 627

Query: 878 DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV----EKSTLKGVDGKLNAVPVTDP 931
           D P     D  Y  A   GLK  TT+     ++  V    E      +   L   P  + 
Sbjct: 628 DCPYEDFKD-TYLYAAEQGLKGCTTFRFIPEASQGVLMKEEDWRTLTISSPLRMAPRLN- 685

Query: 932 NSSTHSLGIPSSCTSDTECEV 952
           + +T  L +   CT    C +
Sbjct: 686 SRATKKLSMTGRCTPQPTCSM 706


>gi|319442629|ref|ZP_07991785.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 395

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+GLA  +      A    
Sbjct: 98  YAKKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALGLADGDA---ALASHLV 154

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 155 DEIIDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 214

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 215 LLSNIREVGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 274

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F    
Sbjct: 275 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFADVS 331

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E+YE   +   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 332 VTEHYEEMVEDPRIRK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GRIT 388

Query: 581 SSNLCTE 587
            SNLC+E
Sbjct: 389 HSNLCSE 395


>gi|329113328|ref|ZP_08242109.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697153|gb|EGE48813.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 352

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 167/354 (47%), Gaps = 59/354 (16%)

Query: 568 NIRSPQQH--VGV-VHSSNLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYD 619
           N   P+ H   G+ V +SNLC+EITL +  +      TAVC L S+NL         ++ 
Sbjct: 2   NNARPEHHKLAGLEVKTSNLCSEITLPTGIDHHGKARTAVCCLSSLNL-----ETWDEWK 56

Query: 620 KLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
                I   +  LDNV    ID     + +AK +    R++GLG+MGF + L   ++P+ 
Sbjct: 57  DNPQFIEDVMLFLDNVLQDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHTFLQSRNVPFE 116

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A     +  + I   A +AS +LA+ RG     +    + GV               
Sbjct: 117 SVIAKVWNRKIFKHIREQADAASRKLAELRGPCPDAE----EYGVME------------- 159

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
                                  R SN MAIAPTA+I+ I G  S  I+P   N++++  
Sbjct: 160 -----------------------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKT 196

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG FTV N  L   L+++      + S +    GS+ +++ +    K +  TAFE+D  
Sbjct: 197 LSGSFTVRNRHLQKLLEEKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQR 256

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           W++E A+ RQ +I QAQS+NL+L     K+ L  I+  AW  GLK+ YY RS S
Sbjct: 257 WIVEHAADRQPFICQAQSVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLS 310


>gi|313159184|gb|EFR58557.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes sp. HGB5]
          Length = 851

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 148/617 (23%), Positives = 256/617 (41%), Gaps = 103/617 (16%)

Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394
           E + LL  F ++       T   +  +   LS+CF+     P D YG IF   +E   L 
Sbjct: 80  EVFELLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L  
Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSI 198

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D + +TG    +    N +  I D FM+                      Y
Sbjct: 199 KHPDAERFIDAKVDTG----KVTGANVSIKIDDEFMRAAIAGKK---------------Y 239

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
            ++F I  ++ + + D         I A  LW K++   +++  P + F D     S P 
Sbjct: 240 HQQFPIKSDHPKYEQD---------IDAKKLWDKIIHNAWKSAEPGVLFWDTIIRESVPD 290

Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +     V  S+N C EI L         C L ++NLL++  N      +F++D+  + +
Sbjct: 291 CYADEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFTKEAKFNFDRFKAHV 346

Query: 626 RTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLM 661
             A+R++D++ID+    +E                        K +      R  GLG+ 
Sbjct: 347 GKAMRMMDDIIDLELEKVEQIIAKIAADPEDEEVRRVELELWKKIRTMAQKGRRTGLGIT 406

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y S EA+  A E  + ++  A  ASV +A +RGA+  +  S       
Sbjct: 407 AEGDMLAALGLLYGSDEAIAFAVEVQKTLAVEAYRASVRMAAQRGAFPIYDASKEKNNP- 465

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                 ++A +R+             EL   ++  G RN   + IAPT T + +   +  
Sbjct: 466 ------MIARIREADP----------ELYAEMEKNGRRNIAMLTIAPTGTTSLMSQTTSG 509

Query: 782 IDPSYQNLYV---KSNMSGDFTVVN--SFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           I+P ++ +Y    K N S   T V+       + ++ +++    +  L  +      +E 
Sbjct: 510 IEPVFRTVYKRRRKINPSDHDTHVDYEDETGEKFQEYNVYHHNFVKWLDANGYDTSKLET 569

Query: 837 IPD-DLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
           I D +L +         ATA +ID +  ++     QKW+D + S+ + L     + L   
Sbjct: 570 ISDAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVAD 629

Query: 888 IYRQAWLMGLKTTYYLR 904
           +YR AW  G K     R
Sbjct: 630 VYRTAWECGCKGVTVYR 646


>gi|253566262|ref|ZP_04843716.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|265766962|ref|ZP_06094791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
 gi|251945366|gb|EES85804.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|263253339|gb|EEZ24815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
          Length = 847

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 157/700 (22%), Positives = 288/700 (41%), Gaps = 109/700 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                      D       ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 238 ----------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD+D     +  A 
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+           ++  HT R +              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SV++A+ERGA+  +         F    
Sbjct: 404 MLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836
           +  +Y  +  ++ + T V    V+E    D ++E ++   K+        +D +    + 
Sbjct: 507 FLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYTQE 564

Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
             D+L        AT+ ++D +  +    + QKW+D + S+ + L     ++L + +Y +
Sbjct: 565 EIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R  S + V  S     D K    P   P
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 664


>gi|118197661|ref|YP_874054.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
 gi|116266352|gb|ABJ91435.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
          Length = 797

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 132/550 (24%), Positives = 230/550 (41%), Gaps = 101/550 (18%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNL---------LSSFHFMCSTP-------TLFN 360
           P   F+RVA+ +AL      KR +E Y L           SF ++ +T         + N
Sbjct: 118 PYHTFVRVALAVALVNARYSKR-LEKYGLDAFKTFVDDFLSFFYILATGRSTGAGRVMSN 176

Query: 361 SGTR----HPQLSSC-FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +G++    +  L +C  +  +PD ++GI   L E ++  K   G G D++ +R  GA +H
Sbjct: 177 AGSKLYKTYTTLINCTVMRQIPDSMHGIMETLTEASLTLKAGAGTGYDFSSIRPKGAFVH 236

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G   ++ GV+ F ++ +     +   G R+GA    ++  H +  +    ++N G  R  
Sbjct: 237 GAGAETSGVVSFAEIFDKMCSTIMSAGGRRGAQMLVIDVRHPESIDLFMAKRNDGVLRY- 295

Query: 476 THDMNTANWIPDLFMKRVTQNAG-----WTL---FSPDEVSDLHD--------------- 512
               N +   P+  M++V  +       WT    F+P EV + +                
Sbjct: 296 ---FNISLLFPNSLMEKVKNDEEFEQWFWTFEMTFTPSEVIEKNGNNVFFIGDKEVVIVE 352

Query: 513 --------------LYGKEFEI-AYENYERQADRGEIK-VFRKISAVALWRKMLTMLFET 556
                          +G++ ++  YEN+ +   R   K VF+++ A  ++  ++   ++ 
Sbjct: 353 NGKLPYEYEEYDYFAFGEDHQVMKYENFGKDKYRIYKKEVFKRVRAREIYDIVMQSTYDY 412

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613
             P I F D  N ++  +    + ++N C E  L         CNLGSI  L  F     
Sbjct: 413 AEPGIIFIDNVNNKNVLKGKEYIRATNPCGEQPLPPYGS----CNLGSI-FLHRFVKEPF 467

Query: 614 -------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    FD+DKL    R   R LD V DI    + + K++  T R  GLG+ G    
Sbjct: 468 NYDLKPEENFDFDKLFEVSRLMNRFLDFVNDITNLPLVQLKEAAFTKRRHGLGISGIADT 527

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS 725
           L ++ + Y S EA +  ++ M  I   +   +V +A   G A        W      +D 
Sbjct: 528 LIMVGLRYGSEEAAKFLEKIMYTIQLASAVENVRMADIYGPAPVGVTLKEW------VDV 581

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSID 783
            G L E  +E+      +LP            +R S+ ++IAPT TI+   G  V+  I+
Sbjct: 582 FGHLKEKLEEIYGEDFYKLP------------LRYSHAISIAPTGTISLTFGNNVANGIE 629

Query: 784 PSYQNLYVKS 793
           P++   Y+++
Sbjct: 630 PTFALSYMRN 639


>gi|258646860|ref|ZP_05734329.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
 gi|260404299|gb|EEW97846.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
          Length = 622

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 152/612 (24%), Positives = 258/612 (42%), Gaps = 98/612 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP---QLSSCFL 373
           PQ F  RV+        E+ K+       ++   F  +  TL+ +G+R      +S+C++
Sbjct: 26  PQQFIDRVSSVFKGDFRERMKK------YITDGDFSPAGRTLYAAGSRGKFKVSMSNCYI 79

Query: 374 TTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P+D L  IF +  E A +  Y GG+G + + +R  G+ +H     S G + F+K+ N
Sbjct: 80  LPSPEDNLESIFHSNYEIARIFSYGGGIGINISNLRPAGSRVHNVARTSTGAVSFMKIFN 139

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T   ++Q G R+GA    L   H D+ EFL +++N      +   MN +    D FM+ 
Sbjct: 140 TTGEVISQNG-RRGAQMVGLNCSHPDIYEFLHIKQN----EEKLSSMNISILFTDEFMEA 194

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  +TL         H       E   EN ER            I A   +R+    
Sbjct: 195 VRDDKEYTL-------RFH------VESTGENIERT-----------IRARDFFREFCET 230

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGV------VHSSNLCTEITLNSSSEETAVCNLGSIN 606
            ++ G P   F D  N      H+        +  +N C E   N+ +     CNLGSIN
Sbjct: 231 QWDWGDPGALFSDRLN----DYHLLAGYDEYQIEITNPCGEFGGNAYN----ACNLGSIN 282

Query: 607 LLA----HFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLG 659
           L       F N    + +K    +   +  LD ++     T  +++ +      R++GLG
Sbjct: 283 LYNMIDDKFGNAPSLNEEKFKQAVYDGIIALDEIVSYGYETQPLDENRTCIDDWRSLGLG 342

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           L G   AL  + + Y S EA    +  M+ +   A+ +S + A+ +G +  ++    ++ 
Sbjct: 343 LFGVADALVAMKLAYGSREASAFMENVMKIMLLSALRSSCDRAKMKGTFGRYRREATEKS 402

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-V 778
             PI  I ++ E+   L  +             ++T G+RN   +AIAPT TI+ + G  
Sbjct: 403 --PI--IQMVKELDGGLYED-------------IRTYGLRNGTLLAIAPTGTISLLMGSF 445

Query: 779 SQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           S   +P Y+  Y +S      ++G F V    + + L+ R L        L   D  I  
Sbjct: 446 SGGCEPLYKISYERSTHKMEEVNGSFRVYAHSVKDLLRYRHL-------PLTLTDDEI-- 496

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
            E+ P  ++  H  +F    M  +   +  QK++D + S  + L ++ + + +  IY  A
Sbjct: 497 REKFPWVIES-HDVSF----MDRVAMQAVMQKYVDNSISSTVNLKNDATPEDIYDIYLAA 551

Query: 893 WLMGLKTTYYLR 904
           W  G K     R
Sbjct: 552 WESGCKGITVFR 563


>gi|304382861|ref|ZP_07365344.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
 gi|304336046|gb|EFM02293.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
          Length = 855

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 158/693 (22%), Positives = 289/693 (41%), Gaps = 113/693 (16%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
           +D  Y A+ LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E 
Sbjct: 9   YDEAYKAS-LKY---FEGDELAARVWVNKYAMKDSFGNIYEQSPENMHWRIANEIARIEN 64

Query: 334 EKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFG 385
           +     +A E ++LL  F ++    + +   G  H    LS+CF+  +  D   YG I  
Sbjct: 65  KYANPLKAEEVFSLLDHFRYIVPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMR 124

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             +E   L K  GG+G+D + VR  G+ ++ +   S G++PF++  +++   V Q G R+
Sbjct: 125 IDEEQVQLMKRRGGVGHDLSHVRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RR 183

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   +   H D E F+D +   G    +    N +  + D FM+              
Sbjct: 184 GALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDGRP------- 232

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                   Y ++F IA +N           V ++I A +LW+K++   +++  P + F D
Sbjct: 233 --------YRQQFPIAGDN---------PMVSKEIDARSLWQKIVHNAWQSAEPGVLFWD 275

Query: 566 PCNIRS-PQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
                S P  +  +     S+N C EI L         C L SINL ++  +      +F
Sbjct: 276 TILRESIPDCYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLFSYVIDPFTDHARF 331

Query: 617 DYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKKSNHT 652
           D+D     +  A R++D+++D+                          H  EK K  +  
Sbjct: 332 DFDTFKKHVGMAQRLMDDIVDLELEKIDAIMNKVQDDPQSGEVKGAEYHLWEKIKDKSSK 391

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  G+G+      L  + + Y + EA   + E  + ++  A  +S  +A+ERGA++ + 
Sbjct: 392 GRRTGVGITAEGDMLAAMGLRYGTEEATAFSVEVHKTLALSAYRSSAIMAKERGAFAVYD 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                             E ++   +      P  EL + +   G RN  C+ IAPT T 
Sbjct: 452 AQ---------------REAKNPFVLRLKEADP--ELYELMVKYGRRNIACLTIAPTGTT 494

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---- 827
           + +   +  I+P +  +Y  +  ++   T V+   V+E+   D ++E ++   K+     
Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPSDTNVHIDFVDEVG--DSFEEYIVYHPKFMQWMK 552

Query: 828 -DGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
            +G         D++  +        ATA ++D +  +      QKW+D + S+ + L  
Sbjct: 553 TNGYDTEKRYTQDEIDALVAKSPYNKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPN 612

Query: 880 PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
              + L + +Y +AW  G K     R  S   V
Sbjct: 613 DVDEALVNRLYVEAWRSGCKGCTIYRDGSRAGV 645


>gi|222480783|ref|YP_002567020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222453685|gb|ACM57950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 1056

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 152/669 (22%), Positives = 264/669 (39%), Gaps = 129/669 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A  F + + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EATADRFRDGMESLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFL-----------DLRKNTGDD-------------------------------R 473
           H DV +F+            LR N  DD                                
Sbjct: 262 HPDVIQFIHSKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDEDGKVPEHLRNAVE 321

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524
               + N +  + D FM+ +  +  +T  +P          E  +++D++G         
Sbjct: 322 GHLSNFNISVGVTDDFMEALYNDEEFTFTNPRTEEPHIATPETKEIYDMFGL-------- 373

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN----IRSPQQHVGVVH 580
                +  E+     I A  LW  M+    E G P + + +  N      + +     + 
Sbjct: 374 ----GEHVEVGEVLSIPADELWDDMIEGAHENGEPGVIYLERVNKEHSFDTKEHPDHRIL 429

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFA 612
           ++N C E  L    EE   CNLG INL                            ++ F 
Sbjct: 430 ATNPCGEQPL----EEYEACNLGHINLSTLAAQDAPDWRVWSDEHADEYDTEEAAMSAFL 485

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D+++    I    R L+NV+ ++   +EK ++     R IGLG+MG       L I
Sbjct: 486 EEAIDFEEFDERIDYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGVMGLAQLYIQLGI 545

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y +    E+A + M  I+  +   S ELA ERG ++ ++ S +              E 
Sbjct: 546 QYGTEPGNEVARQLMTHINHASKQTSHELATERGTFNDWEESKYANPT----------EY 595

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           RD       + L  DE +       +RN N   IAPT T + I   +   +P Y   Y K
Sbjct: 596 RD--WFEHYTGLDADEWEDGFP---IRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYK 650

Query: 793 S---NMSGDFTVV--NSFLVNELKQRDLWDEAMISDLKYH------DGSIGNIERIPDDL 841
           +   ++ GD  +V  + + +  L++ D+  +A+  + +        DG  G +E +PD +
Sbjct: 651 NVSDDVQGDEMLVEFDDYFLRTLEENDVDVDAVKQEAQEQMATNEFDGVDG-LETVPDAI 709

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK-- 898
            ++     ++            Q+ +D A S    + ++ + ++++ +YR  +  G K  
Sbjct: 710 GELFVVTGDLSGKQHASVQCACQEGVDSAISKTCNFPNDATAEEMEEVYRYIYDHGGKGV 769

Query: 899 TTYYLRSRS 907
           T Y   +RS
Sbjct: 770 TVYRDGTRS 778


>gi|293572391|ref|ZP_06683372.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
 gi|291607540|gb|EFF36881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
          Length = 827

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 188/428 (43%), Gaps = 45/428 (10%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           ++K+ + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L 
Sbjct: 413 KVKIHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLT 472

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 AVCNL +INL A+  + +    D++KLA  +R +VR  DNVID   +  EK ++
Sbjct: 473 P----YAVCNLAAINL-ANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQ 527

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++
Sbjct: 528 QAKGERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSF 587

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   ++           A  +  +      ++P + +++ +   G+RNS+ + +AP
Sbjct: 588 PFLVGKTVEETT---------ALRQRFIESGYMKKMP-ESIRQAILKYGIRNSHLLTVAP 637

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  VN+ +V+E  ++               
Sbjct: 638 TGSTGTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK--------------- 682

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
               N E   D+L     +A E+ P   +      Q+W+D + S  +    E   K++  
Sbjct: 683 ----NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVDSSISKTVNAPKEYQVKQVAA 738

Query: 888 IYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           IY   +  G K  T Y   SR +  +   TL+  D      PV    ++  +L    S  
Sbjct: 739 IYEDLYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESSE 794

Query: 946 SDTECEVC 953
           ++  C +C
Sbjct: 795 AEEICPIC 802



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 299 QILYDRYFLHINGSRIEMP-QAFFMRVAMGLA--LKETEKEKRA---VEFYNLLSSFHFM 352
           +I   R   +IN   +E P + +F ++A  +A  + + E EK+A    EFY  L+  + +
Sbjct: 103 EIASGRVIRNIN--EVEKPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLI 160

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L+ +GT       +C++   + D   G+    QE   +    GG+G + + +R  
Sbjct: 161 PAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPK 220

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            A +HG NGKS G + +L    +    V QGG R+GA    L  WH D+ EF+
Sbjct: 221 SAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFI 273


>gi|218128620|ref|ZP_03457424.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
 gi|217989222|gb|EEC55536.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
          Length = 587

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 132/546 (24%), Positives = 230/546 (42%), Gaps = 95/546 (17%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           L + F ++    S  T   +  +   LS+CF+  V    D YG IF   +E   L K  G
Sbjct: 77  LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +D         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATD--------- 242

Query: 519 EIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHV 576
                            VF+K I+A  LW+K++   +++  P + F D     S P  + 
Sbjct: 243 ----------------PVFKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYA 286

Query: 577 GVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
            + +   S+N C EI L         C L +INL ++  N       FD+D     +  A
Sbjct: 287 DLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALA 342

Query: 629 VRVLDNVIDINCHTIEK----------AKKSNHTH--------------RAIGLGLMGFQ 664
            R++D++ID+    IE+          ++   HT               R  G+G+    
Sbjct: 343 QRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEG 402

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA E A++  + ++  A  +SV +A+ERGA+  +         F   
Sbjct: 403 DMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYDSEREKNNPF--- 459

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  L E   EL         ++E+KK     G RN  C+ IAPT T + +   +  I+P
Sbjct: 460 -INRLREADPEL---------YEEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEP 505

Query: 785 SYQNLY 790
            +  +Y
Sbjct: 506 VFLPVY 511


>gi|53715111|ref|YP_101103.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
 gi|52217976|dbj|BAD50569.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
          Length = 798

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 147/644 (22%), Positives = 265/644 (41%), Gaps = 105/644 (16%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394
           + + L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L 
Sbjct: 24  QLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLM 83

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +  
Sbjct: 84  KRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSI 142

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  + D FM    +   +T   P          
Sbjct: 143 KHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYP---------- 188

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
                          D       ++I A  LW+K++   +++  P + F D     S P 
Sbjct: 189 --------------IDSDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPD 234

Query: 574 QHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
            +  + +   S+N C EI L         C L +INL ++  N       FD+D     +
Sbjct: 235 CYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFDLFHKHV 290

Query: 626 RTAVRVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLM 661
             A R++D++ID+    IE+           ++  HT R +              G+G+ 
Sbjct: 291 ALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGIT 350

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y + EA E +++  + ++  A  +SV++A+ERGA+  +         F
Sbjct: 351 AEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF 410

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
               I  L E    L         ++++KK     G RN  C+ IAPT T + +   +  
Sbjct: 411 ----INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSG 453

Query: 782 IDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIG 832
           I+P +  +Y  +  ++ + T V    V+E    D ++E ++   K+        +D +  
Sbjct: 454 IEPVFLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKR 511

Query: 833 NIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
             +   D+L        AT+ ++D +  +    + QKW+D + S+ + L     ++L + 
Sbjct: 512 YTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNR 571

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +Y +AW  G K     R  S + V  S     D K    P   P
Sbjct: 572 LYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 615


>gi|314922993|gb|EFS86824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL001PA1]
          Length = 950

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G YS +      +   P  ++  +A+ RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|319788201|ref|YP_004147676.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466713|gb|ADV28445.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 718

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 150/638 (23%), Positives = 266/638 (41%), Gaps = 78/638 (12%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRH--PQLSSCFLT-- 374
           + RVA  LA  E  +EKR   +   L +     + +     N+G +   P  S+   T  
Sbjct: 50  YQRVARALADAEQTEEKRTYWYERFLWALRRGAIPAGRITSNAGAQEHKPATSTINCTVS 109

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D + GI   + E  +  K   G+G +++ +R  GA + G    + G + F+ + + 
Sbjct: 110 GTIGDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPRGAFVAGAGAYTSGPMSFMDIFDK 169

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV++F+  ++  G    R    N +  I D FM+ V
Sbjct: 170 MCFTVSSAGGRRGAQMGTFDVSHPDVKDFIRAKREDG----RLRQFNLSLLITDGFMEAV 225

Query: 494 TQNAGWTLFSP---DEVSDLHDLYGKEFEI-----AYENYERQADRGEI--KVFRKISAV 543
             +  W L  P    E +D+ DL   +  +     A+++     D G +  K++  I A 
Sbjct: 226 DADGDWPLVFPVNRKEEADI-DLSNADQVVWRDWPAHDDAYIVRDDGMVACKIYGHIKAR 284

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  ++   ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 285 HLWEMIMVSTYDYAEPGFILIDRVNEMNNNWWCENIRATNPCGEQPLPP----YGACLLG 340

Query: 604 SINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL     +       FD+++    +R   R+LDNV+++N   +E+ +      R  G+
Sbjct: 341 SVNLTKFVRDPFTDKASFDWEEYKEVVRVFTRMLDNVVEVNGLPLEQQRNEIMRKRRHGM 400

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-------AYSSF 711
           G +G  S L +L + Y S +++   ++    ++       + LA+E+G        ++  
Sbjct: 401 GFLGLGSTLTMLRMKYGSADSLGFTEQVARDMAVAGWEVGLSLAKEKGPAPIMDETFTVT 460

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNC 763
              L  +     D   +  E+  ++   R SR         P  +L   +   G R ++ 
Sbjct: 461 PQMLRQRPEMAKDGWRVGQEIEGKVLHARYSRYMQRIASVAP--DLVDELAETGARFTHH 518

Query: 764 MAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ-RDLWDE 818
            +IAPT TI    AN    S  I+PS+ + Y ++            ++ E K+ ++  D 
Sbjct: 519 SSIAPTGTISLSLAN--NASNGIEPSFAHHYSRN------------VIREGKKSKEKVDV 564

Query: 819 AMISDLKYHDGSIGNIERIP--DD----LKKIHATAFEIDPMWLIESASRRQKWIDQ--A 870
                L Y +  + N + +P  DD    L     +A +I P   ++  +  QKW+D   +
Sbjct: 565 YSFELLAYRE--LVNPKAMPFSDDPEAQLPDYFISADDISPKEHVDVQAAAQKWVDSSIS 622

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           ++ N+  D P     D IYR A   GLK     R   A
Sbjct: 623 KTANVPTDYPYEDFKD-IYRYAHQQGLKGCTTFRFNPA 659


>gi|282854026|ref|ZP_06263363.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|282583479|gb|EFB88859.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|314981104|gb|EFT25198.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA3]
 gi|315091930|gb|EFT63906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA4]
          Length = 950

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G YS +      +   P  ++  +A+ RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|314966769|gb|EFT10868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA2]
 gi|315093314|gb|EFT65290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL060PA1]
 gi|315103431|gb|EFT75407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA2]
 gi|327327595|gb|EGE69371.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL103PA1]
          Length = 950

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 144/604 (23%), Positives = 242/604 (40%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G YS +      +   P  ++  +A+ RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYSGYA-----ENAEPHQAV--MAKHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|319440695|ref|ZP_07989851.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 387

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 287 YERDFAFE-YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y + F F+ +LG    Y  Y L   +G R +E  +     VA+GLA  +       V+  
Sbjct: 90  YAKKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALGLADGDAALASHLVD-- 147

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 148 -EIIDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 206

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 207 LLSNIREVGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRF 266

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--I 520
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK F    
Sbjct: 267 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERIYGKPFADVS 323

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E+YE   +   I+   KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G + 
Sbjct: 324 VTEHYEEMVEDPRIRK-SKINARQFFQTLAEIQFESGYPYIMFEDTVNRANPIE--GRIT 380

Query: 581 SSNLCTE 587
            SNLC+E
Sbjct: 381 HSNLCSE 387


>gi|118594264|ref|ZP_01551611.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
 gi|118440042|gb|EAV46669.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
          Length = 720

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 138/577 (23%), Positives = 245/577 (42%), Gaps = 79/577 (13%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D +  I   ++E  +  K   G+G +++ +R  GA + G    + G + F+ + +   
Sbjct: 112 IEDSMTDILDKVKEAGLTLKAGCGIGYEYSTLRPKGAFVAGAGAYTSGPLSFMDIYDRMC 171

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I   FM+ V  
Sbjct: 172 FTVSSAGGRRGAQMATFDIAHPDVTDFIKAKREDG----RLRQFNLSCLITKEFMEAVKA 227

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-------------------RQADRGEIKV 536
           +  W L  P     + +   KE +I  +N E                   + A +   KV
Sbjct: 228 DGEWKLAFP-----ITEKEAKEDQIDLKNNEQVVWREWPVNGKYLTELKGKNAGKVACKV 282

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           ++ + A  LW  +++  ++   P     D  N  +       + ++N C E  L      
Sbjct: 283 YKTLKAKRLWDIIMSSTYDYAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPP---- 338

Query: 597 TAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGSINL     N       F++D+    +    R+LDNV++IN   +EK +    
Sbjct: 339 YGACLLGSINLTKFVKNPFTDKAYFNWDEYKEVVGIFTRMLDNVVEINGLPLEKQRDEIA 398

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA---- 707
             R  G+G +G  S+L ++ + Y   ++++  ++    ++       V+LA+E+GA    
Sbjct: 399 RKRRHGMGYLGLGSSLAMMQMVYGDEKSIKFTEDVSRILAEEGWKTGVDLAKEKGAAPIM 458

Query: 708 ---YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----LPWDELKKRVKTIGMRN 760
              +      L  +     D I +  ++  ++ M R SR     P   L+ ++   G+R 
Sbjct: 459 EELFEVTPAMLAMRPEMETDGIKIGDKLPGKVLMGRYSRYMQQFP-KSLQDQIADQGVRF 517

Query: 761 SNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQR 813
           S+  +IAPT TI    AN    S  I+PS+ + Y ++ +         V+ F    L  R
Sbjct: 518 SHHSSIAPTGTISLSLAN--NASNGIEPSFAHHYSRNVIREGKKSKEKVDVFSFELLAYR 575

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            L ++  +   +  +      E++PD   D   I A A  +D    I++A+  QKWID  
Sbjct: 576 HLINQKAMPFSEKEN------EKLPDYFIDSSTIQAKA-HVD----IQAAA--QKWID-- 620

Query: 871 QSLNLYLDEPSGKKL-DF--IYRQAWLMGLKTTYYLR 904
            S++  ++ P+     DF  IY  A+  GLK     R
Sbjct: 621 SSISKTINVPTDYDYEDFKSIYLYAYDKGLKGCTTFR 657


>gi|281423575|ref|ZP_06254488.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
 gi|281402395|gb|EFB33226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
          Length = 861

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 150/658 (22%), Positives = 269/658 (40%), Gaps = 111/658 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371
           P+    R+A  +A  E + +    A E + +L  F ++    + +   G  H    LS+C
Sbjct: 48  PEDMHRRIANEVARIEAKYKNPMNAQEIFEMLDHFKYIVPAGSPMTGIGNSHQVASLSNC 107

Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D YG I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF+
Sbjct: 108 FVIGLEGKADSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFM 167

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  + D 
Sbjct: 168 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDE 222

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ--ADRGEIKVFRKISAVALW 546
           FM+    +                           NY +Q   D  E K+ ++ISA  LW
Sbjct: 223 FMQAAVDD--------------------------RNYMQQWPIDAKEPKITKEISARKLW 256

Query: 547 RKMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVH-SSNLCTEITLNSSSEETAVCNL 602
            K++   +++  P + F D     +I      +G    S+N C EI L         C L
Sbjct: 257 EKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFTTVSTNPCGEIPLCPYDS----CRL 312

Query: 603 GSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINC----------------- 640
            SINL ++          F++DK    ++ A R++D+++D+                   
Sbjct: 313 LSINLYSYVEKPFTTEASFNFDKFKKHVQIAQRIMDDIVDLEMEKIDLIIHKIKEDPEND 372

Query: 641 -------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
                  H  EK K+ +   R  G+G+      L  L + Y + EA + +    + ++ +
Sbjct: 373 EVKEAEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALGLRYGTQEATDFSVSVHKTLALN 432

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  +SV +A+ERGA+  +                   EV +          P  EL   +
Sbjct: 433 AYRSSVTMARERGAFEIYDAK---------------REVNNPFVQRIKEADP--ELFADM 475

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQ 812
           +  G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E+  
Sbjct: 476 QQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG- 534

Query: 813 RDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESA 860
            D ++E ++   K+      N            I+ +        ATA ++D +  ++  
Sbjct: 535 -DSFEEYIVYHRKFLQWMQVNGYDTEKRYTQEEIDHLVAKSPYYKATANDVDWLMKVKMQ 593

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
              QKW+D + S+ + L     + L + +Y +AW  G K     R  S   V  S  K
Sbjct: 594 GAIQKWVDHSISVTVNLPHDVDESLVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSK 651


>gi|331668937|ref|ZP_08369785.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064131|gb|EGI36042.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 375

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 22/371 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYG----------QFEPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L      +E R      FY+ +S+F     TP +  SG R P  Q SSC L   
Sbjct: 174 ILVAACL-FSNYPRETRLQYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ + 
Sbjct: 291 SCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKG 350

Query: 497 AGWTLFSPDEV 507
              TLFSP +V
Sbjct: 351 EDITLFSPSDV 361


>gi|327314698|ref|YP_004330135.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
 gi|326945704|gb|AEA21589.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
          Length = 865

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 157/687 (22%), Positives = 288/687 (41%), Gaps = 119/687 (17%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E + +    A E ++LL
Sbjct: 20  FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVPDDL--YG-IFGALQENAMLAKYSGGL 400
             F ++    +       H Q   LS+CF+  +  D   YG I    +E   L K  GG+
Sbjct: 80  DHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRHGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 140 GHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +  +                ++F I
Sbjct: 199 AFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFV---------------QQFPI 239

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D     V + +SA  LW K++   +++  P + F D     S P  +  + 
Sbjct: 240 ---------DARAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L S+NL ++  +       FD+D  +   + A R+
Sbjct: 291 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRI 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK ++ +   R  G+G+      +
Sbjct: 347 MDDIVDLEMEKIDLIMEKIKHDPQSEEVKHAEYHLWEKIREKSGKGRRTGVGITAEGDMI 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA + +      ++ +A  ASV +AQERGA   +     +   F    I 
Sbjct: 407 AAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGALGIYDAKREENNPF----IN 462

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E   +L         ++++KK     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 463 RLKEADAKL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH- 845
            +Y  +  ++ + T V+   V+E+   D ++E ++    YH   +  +E    D +K + 
Sbjct: 510 PVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIV----YHHKFLTWMEVNGIDTRKRYT 563

Query: 846 ---------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
                          ATA ++D +  +      QKW+D + S+ + L     ++L + +Y
Sbjct: 564 QEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLY 623

Query: 890 RQAWLMGLK--TTYYLRSRSATSVEKS 914
            +AW  G K  T Y   SRS   +  S
Sbjct: 624 VEAWRSGCKGCTIYRDGSRSGVMISVS 650


>gi|295836140|ref|ZP_06823073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
 gi|197695235|gb|EDY42168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
          Length = 964

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 145/580 (25%), Positives = 245/580 (42%), Gaps = 46/580 (7%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R 
Sbjct: 144 FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRS 203

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE F++ +  
Sbjct: 204 -SKELLTSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVEGFIETKVK 262

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             +  R   D   A +  DL    +T    QNA  ++   DE     +  GK F +    
Sbjct: 263 EEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGK-FGL---- 314

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R    GE  V  ++ A +L+RKM    +    P I + D  N        G ++ SN 
Sbjct: 315 --RSRLTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNP 370

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI 638
           C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   +  +D  I  
Sbjct: 371 CSEYMHLDNTS-----CNLASLNLMKFLKDDGNGNQSFEAERFAKLVELVITAMDISICF 425

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                EK  ++    R +G+G     + L      Y S     +A      ++  A   S
Sbjct: 426 ADFPTEKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAISSLMTGTAYRRS 485

Query: 699 VELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPWDELKKRVK 754
            ELA   G Y  F + +   + V    +    A VR D+L   +   +   W ++ +  +
Sbjct: 486 AELAAVVGPYEGFARNATAHKRVMKQHADANGAAVRMDDLDTPVWAAATEAWQDVLRLGE 545

Query: 755 TIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G RN+    +APT TI  A  C  +  ++P    +  K  + G    + +  V +  +
Sbjct: 546 KNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVNGTVPQALR 604

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
           R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +   +  Q 
Sbjct: 605 RLGYQEEQIEAIVAHIAENGNVVDAP-ALKTEHYEVFDCAMGDRAISPMGHVRMMAAIQP 663

Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 664 WISGAISKTVNMPESATVEEVEEIYFEAWKLGIKALAIYR 703


>gi|83647576|ref|YP_436011.1| ribonucleotide reductase subunit alpha [Hahella chejuensis KCTC
           2396]
 gi|83635619|gb|ABC31586.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 712

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/562 (22%), Positives = 233/562 (41%), Gaps = 74/562 (13%)

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            E  +  K   G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA
Sbjct: 117 HEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDKMCFTVSSAGGRRGA 176

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP--- 504
             A  +  H DV +F+  ++  G    R    N +  I + F+K V  +  W    P   
Sbjct: 177 QMATFDVHHPDVFDFVRAKREDG----RLRQFNLSLLITEDFIKAVQNDEDWRFSFPITR 232

Query: 505 ----DEVSDLHD----LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               ++  D++D    LY ++F +       ++ R   +++R + A ++W  ++T  ++ 
Sbjct: 233 KEAEEDNIDVNDETQYLY-RDFPVKDGYMTDESGRVVCRIYRTVKARSIWDAIMTSTYDF 291

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
             P     D  N  +       + ++N C E  L         C LGS+NL         
Sbjct: 292 AEPGFILIDKVNEMNNNWFCENIRATNPCGEQPLPPYGS----CLLGSVNLTKFVEYPFT 347

Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N +F++DK    +    R+LDNV++IN   +E  +      R  G+G++G  S L +L 
Sbjct: 348 ENAKFNFDKYRKVVAIFTRMLDNVVEINGLPLEGQRHEIQYKRRHGMGILGLGSTLAMLR 407

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYS-------------SFKGSLWDQ 718
           +PY S E+V   +E    ++       +ELA+E+G                  +  +   
Sbjct: 408 MPYGSDESVSFTEEVCREMALEGWRQGLELAKEKGPAPIMEDTFIVTEEMLRLRPEMAKD 467

Query: 719 GVFPIDSI-GLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATI-- 772
           G+   D + G +   +    M R +       D L K+    G R ++  +IAPT TI  
Sbjct: 468 GLKAGDKLKGKVLHAKYSRYMQRVAEADPKLVDALAKK----GARFTHHTSIAPTGTISL 523

Query: 773 --ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
             AN    S  I+PS+ + Y +           + +    K ++  D      L Y    
Sbjct: 524 SLAN--NASNGIEPSFAHHYSR-----------NVIRQGKKTKEKMDVFSYELLAYR--H 568

Query: 831 IGNIERIP------DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSG 882
           + N + +P        L     T+ ++ P   ++  +  Q W+D   +++ N+  D P G
Sbjct: 569 LVNPKAMPFSEDAEAQLPAYFTTSDDVTPKQHVDIQAAAQLWVDSSISKTANVPTDFPYG 628

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           +  D IY  A+  GLK     R
Sbjct: 629 EFKD-IYMYAYEKGLKGCTTFR 649


>gi|313667234|ref|YP_004049635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153865|gb|ADR37715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 927

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 138/587 (23%), Positives = 237/587 (40%), Gaps = 123/587 (20%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND-- 433
           VPDD+ GI  A  E    A     +  D++ +R  GA +  + G + G + FL    D  
Sbjct: 205 VPDDMGGIIDAATEAVRRALAGEQVYVDFSALRPEGAPVKRSGGTASGPVSFLSEIFDHF 264

Query: 434 -----------TAVA------------VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                        VA            V QGG R+GA  A L   H DV +FL  +    
Sbjct: 265 LYWARLGGVESGPVATLRYVYAPILRVVRQGGTRRGAGMATLSWQHPDVLDFLTAK---- 320

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--LHDLYGKEFEIAYENYERQ 528
                  D++      D+    ++  A   LF    V    LH + GK     Y++    
Sbjct: 321 -------DLDREEAEGDIATFNISVLADNELFDGPAVDSGYLHPVPGK-----YDS---- 364

Query: 529 ADRGEIKVFRKISAVALW--RKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSN 583
                      +S V  W   ++    + TG P + F D  N +SP + +     + ++N
Sbjct: 365 --------LPTLSDVRPWILEQIAEHAWATGEPGLIFIDRINEKSPLKVLDERWRITATN 416

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C EI L         C+LG++ L ++  +  FD       +R AVR LDNV+D+  + +
Sbjct: 417 PCGEIPLAKGE----ACDLGAMILPSYVKDGAFDEAAFRRDVRLAVRFLDNVLDVTRYAV 472

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           +  +++    R +GLG+MG    L L+   Y  PEA E+ +  +  +   A++ S  LA+
Sbjct: 473 KDNEETQALTRRLGLGVMGLADMLILMGYRYDDPEAREVVEHVVGILRDEALAESERLAE 532

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR---N 760
           ERG             VFP+                      + + +K  + +G+R   N
Sbjct: 533 ERG-------------VFPL----------------------YAQHQKEFEALGIRPRRN 557

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK--------- 811
              + +APT T++ + GVS  I+P +     +        +V+      L+         
Sbjct: 558 LALLTVAPTGTVSMVAGVSSGIEPIFAAFVWRRIGEQYVPLVHPLFARLLEGFEPPEGYR 617

Query: 812 -QRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                W+ E++++ L+ H GS   ++ +P  ++ +  TA ++ P   +   +  Q+  D 
Sbjct: 618 TPEGRWNMESVLAALQEHHGSPQQLDFLPQAIRDVFVTAHDVAPEDHVAMQAAVQRAFDA 677

Query: 870 AQSL---------NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++ L         NL  +E + + +  +YR AW +G K     R  S
Sbjct: 678 SEQLVGNAISKTTNLP-NEATVEDVLTVYRTAWKLGAKGITVYRDGS 723


>gi|225019985|ref|ZP_03709177.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
 gi|224947349|gb|EEG28558.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
          Length = 757

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 200/444 (45%), Gaps = 72/444 (16%)

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LS+C++ + P+D +  IF    + A    Y GG G D + +   GA I+    ++ G + 
Sbjct: 73  LSNCYVISPPEDNIESIFECATKLARTYSYGGGCGTDISGLSPRGAKINNAARETSGSVS 132

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+ + +     + Q G+R GA+   +   H DVEEF+ ++ N      +    N +  I 
Sbjct: 133 FMDLYSLITELIGQNGRR-GALMLSISCSHPDVEEFIKVKTNL----EKVTKANISVRIT 187

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FM+ V  +A +TL               EF         + + GE  + RK++A  L+
Sbjct: 188 NDFMQAVKDSAEYTL---------------EF--------TRVETGE-HIERKVNARELF 223

Query: 547 RKMLTMLFETGHPWITFKD---PCNIRSPQQ---HVGVVHSSNLCTEITLNSSSEETAVC 600
           R +    ++   P   F D     N+ S  +   + GV    N C E  L +       C
Sbjct: 224 RLIAETNWDFAEPGALFWDRISSWNLLSNNKEFRYAGV----NPCAEEPLPAGGS----C 275

Query: 601 NLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHT 652
            LGSINL + F       N +FD+     T+  + R L++V++  +  H +E+ ++S   
Sbjct: 276 LLGSINL-SEFVTDPFTENARFDFAAFKETVAVSTRALNDVLEEGLPLHPLEEQRESVSN 334

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG+MG    L  L I Y   EA++++D+    ++  AI+ S  LA++ GA     
Sbjct: 335 WRQIGLGIMGLADMLVKLGITYGEQEAIDLSDKIGFAMADTAIAESARLAKQHGA----- 389

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                   FP  +I  + E     A      L      + VK  G+RNS  + IAPT T+
Sbjct: 390 --------FPKCNIEEIIETPYFQANTSPKTL------ELVKKYGLRNSQLLTIAPTGTL 435

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS 796
           + + G+S  I+P Y N Y +   S
Sbjct: 436 STMLGISGGIEPIYANFYERKTES 459


>gi|312130912|ref|YP_003998252.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Leadbetterella byssophila DSM 17132]
 gi|311907458|gb|ADQ17899.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leadbetterella byssophila DSM 17132]
          Length = 851

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 157/717 (21%), Positives = 287/717 (40%), Gaps = 130/717 (18%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--E 315
           R IEE  + +   E      L Y   D           L  ++   +Y L  +   I  +
Sbjct: 3   RIIEETQRQKYTTEEATQAALEYFKGD----------DLAAKVWVTKYALKDSEGNIYEK 52

Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLS 369
            P+    R+A  +A  E++     +  E  +L+  F ++    +   +G  +P     LS
Sbjct: 53  SPEDMHHRIASEIARVESKYPSPMKYEEILDLIRDFKYIVPQGSPM-TGIGNPFQIASLS 111

Query: 370 SCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           +CF+   P    D   GI    QE   L K  GG+G+D + +R  G+ +  +   S G++
Sbjct: 112 NCFVIGHPNGTGDSYGGIMKIDQEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLV 171

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           PF++  +++   V Q G R+GA+   +   H D E+F+D +   G    +    N +  I
Sbjct: 172 PFMERYSNSTREVAQDG-RRGALMLSVSINHPDAEDFIDAKLEAG----KITGANVSVRI 226

Query: 486 PDLFMKRVTQNAGWT----LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            D FMK V   + +T    +FSP+                             ++ ++I 
Sbjct: 227 DDDFMKAVKNKSAYTQKFPIFSPNP----------------------------RMTKEID 258

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVH---SSNLCTEITLNSSSEET 597
           A  +W+K++   +++  P I F D     S P  +  + +   S+N C EI L       
Sbjct: 259 AEKIWQKIVHNAWKSAEPGILFWDTIRRESLPDCYADLGYETVSTNPCGEIPLCPYDS-- 316

Query: 598 AVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------- 644
             C L +INL ++  N       FD+D     +  A R++D++ID+    I+        
Sbjct: 317 --CRLLAINLYSYVVNPFKKDAYFDFDLFKQHVGAAQRMMDDIIDLELEKIDAILQKIDE 374

Query: 645 ----------------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
                           + +      R  G+G+      L  L I Y   E +  + +  +
Sbjct: 375 DPEDEEIKRIEKNLWLEIRTKAREGRRTGVGITAEGDMLAALGIRYGREEGIAFSIKVHQ 434

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            ++  A  AS E+A+ERGA+S F                   E  +   +   S  P   
Sbjct: 435 TLTLAAYRASCEMAKERGAFSIFDAQ---------------REKNNPFLLRIKSVDP--A 477

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLV 807
           L   ++  G RN   + IAPT + + +   +  I+P +  +Y  +  ++ +   V    V
Sbjct: 478 LYNDLQEYGRRNIALLTIAPTGSTSILTQTTSGIEPVFMPVYKRRRKVNPNDKNVRVDFV 537

Query: 808 NELKQRDLWDEAMISDLKY------------HDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +E+   D W+E ++   K+             + S   I+ +        AT+ ++D + 
Sbjct: 538 DEVG--DSWEEYVVFHHKFKTWMEAQGIDTSKNLSDAEIDELIAQSPYYKATSNDVDWVS 595

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            ++     QKW+D + S+ + + +E + + ++ +Y  AW  G K     R  S + V
Sbjct: 596 KVKMQGEIQKWVDHSISVTINIPNEATEELVNELYITAWEAGCKGVTVYRDGSRSGV 652


>gi|299141379|ref|ZP_07034516.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
 gi|298577339|gb|EFI49208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
          Length = 861

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 150/658 (22%), Positives = 269/658 (40%), Gaps = 111/658 (16%)

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSC 371
           P+    R+A  +A  E + +    A E + +L  F ++    + +   G  H    LS+C
Sbjct: 48  PEDMHRRIANEVARIEAKYKNPMNAQEIFEMLDHFKYIVPAGSPMTGIGNSHQVASLSNC 107

Query: 372 FLTTVPD--DLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D YG I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF+
Sbjct: 108 FVIGLEGKADSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFM 167

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++   V Q G+R GA+   +   H D E F+D +   G    +    N +  + D 
Sbjct: 168 ERYSNSTREVAQDGRR-GALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDE 222

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ--ADRGEIKVFRKISAVALW 546
           FM+    +                           NY +Q   D  E K+ ++ISA  LW
Sbjct: 223 FMQAAVDD--------------------------RNYMQQWPIDAKEPKMTKEISARKLW 256

Query: 547 RKMLTMLFETGHPWITFKDPC---NIRSPQQHVGVVH-SSNLCTEITLNSSSEETAVCNL 602
            K++   +++  P + F D     +I      +G    S+N C EI L         C L
Sbjct: 257 EKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFTTVSTNPCGEIPLCPYDS----CRL 312

Query: 603 GSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVID-------------------- 637
            SINL ++          F++DK    ++ A R++D+++D                    
Sbjct: 313 LSINLYSYVEKPFTTEASFNFDKFKKHVQIAQRIMDDIVDLEMEKIDLIIHKIKEDPEND 372

Query: 638 ----INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
               +  H  EK K+ +   R  G+G+      L  L + Y + EA + +    + ++ +
Sbjct: 373 EVKEVEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALGLRYGTQEATDFSVSVHKTLALN 432

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  +SV +A+ERGA+  +                   EV +          P  EL   +
Sbjct: 433 AYRSSVTMARERGAFEIYDAK---------------REVNNPFVQRIKEADP--ELFADM 475

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQ 812
           +  G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E+  
Sbjct: 476 QQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG- 534

Query: 813 RDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESA 860
            D ++E ++   K+      N            I+ +        ATA ++D +  ++  
Sbjct: 535 -DSFEEYIVYHRKFLQWMQVNGYDTEKRYTQEEIDHLVAKSPYYKATANDVDWLMKVKMQ 593

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
              QKW+D + S+ + L     + L + +Y +AW  G K     R  S   V  S  K
Sbjct: 594 GAIQKWVDHSISVTVNLPHDVDESLVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSK 651


>gi|260062376|ref|YP_003195456.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
 gi|88783939|gb|EAR15110.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
          Length = 850

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 158/656 (24%), Positives = 264/656 (40%), Gaps = 122/656 (18%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFL--TTVPDDLYG-IFGALQENAML 393
           E ++L+ +F ++    +   +G  +P     LS+CF+  T    D YG I    QE   L
Sbjct: 80  EIFDLIKNFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGTDGNSDSYGAIMKVDQEQVQL 138

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   + 
Sbjct: 139 MKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVS 197

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D E+F+D +   G    +    N +  I D FMK V  +  +T   P   SD    
Sbjct: 198 INHPDAEDFIDAKMEQG----KVTGANVSVRIDDAFMKAVEMDGHYTQKFPIHSSDP--- 250

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-P 572
                                K  +KI A  LW+K++   +++  P I F D     S P
Sbjct: 251 ---------------------KFSKKIKASQLWKKIVHNAWKSAEPGILFWDTIIDESVP 289

Query: 573 QQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLAST 624
             +  + +   S+N C EI L         C L +INL ++          F++      
Sbjct: 290 DCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEEPFTEEASFNFPLFKKH 345

Query: 625 IRTAVRVLDNVIDINCHTI------------------------EKAKKSNHTHRAIGLGL 660
           I  A R++D++ID+    +                        +  +K     R  G+G+
Sbjct: 346 IAAAQRIMDDIIDLELEKVDAILKKIEDDPELDETKMVEYKLWQNIRKKAEEGRRTGIGI 405

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L  L + Y S +A E + E  + I+  A  ASV+ A++RGA+  F      +  
Sbjct: 406 TAEGDMLAALGLRYGSKKANEFSVEVHKTIALEAYRASVQTARDRGAFGIFDAQREKENP 465

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F    I  L E  ++L                    G RN   + IAPT T + +   + 
Sbjct: 466 F----ILRLKEADEKLYYEMLEH-------------GRRNIALLTIAPTGTTSLMTQTTS 508

Query: 781 SIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMI---------------S 822
            I+P +  +Y    K N +     V+   V+E+   D W+E ++               +
Sbjct: 509 GIEPVFLPVYKRRRKVNPNDKEARVD--FVDEVG--DSWEEYLVFHHQFKAWMITKGYDT 564

Query: 823 DLKYHDGSIGNI-ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           D  Y    I  I E+ P       AT+ ++D +  +      QKW+D + S+ + L ++ 
Sbjct: 565 DKNYSQEEINAIVEKSP----YYKATSNDVDWLSKVRLQGEVQKWVDHSISVTINLPNDV 620

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK-GVDGKLNAVPVTDPNS 933
           S + +  +Y +AW  G K  T Y   SRS   +     K      L A P   P +
Sbjct: 621 SEELVGKLYLEAWKAGCKGVTVYRDGSRSGVLISNDDNKEDSQNTLTAFPTKRPQT 676


>gi|51512034|gb|AAU05233.1| ribonucleoside-diphosphate reductase 1 alpha chain [Enterobacteria
           phage T5]
          Length = 811

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 170/776 (21%), Positives = 303/776 (39%), Gaps = 105/776 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  + ++ P     H+       +      E +
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDS-FEPPSLRFFHDHMVSVGAW------EDM 153

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFM 322
            A +  E     + V     + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 154 SAWITDEQFEALNQV-----IDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWT------PVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           I  A      +     G+G          PVR  GA  H       G +P+ +   D +V
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLESRSIADPVRN-GAFPHS------GKLPYYRHI-DRSV 320

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             N    R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N
Sbjct: 321 KANTQQTRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKN 380

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR------------GEIKVFRKISAVA 544
              TL S     ++H+ +  + E  +E     A++              +    K+SA  
Sbjct: 381 EDITLMSYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPTAPKVSAKE 440

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----------LNSS 593
           +    L +  ETG  +       N       +  +  +NLC EIT           L  +
Sbjct: 441 ILDTWLRIRMETGRMYAHHIGESNRHG--NFLDPIRMTNLCVEITQPTRPFHHITELYKT 498

Query: 594 SE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            E           E ++CNLG + L    +  +++      T    ++ +D +I+I  + 
Sbjct: 499 KEQLDQMKPEDIGEVSLCNLGGVVLGRMESLAEWE-----KTCYILLKFVDTIIEIQDYP 553

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               + +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA
Sbjct: 554 FPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLA 613

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA   F  +   +G+  ID+     +  DEL ++    + W+ L+  +   GMRNS 
Sbjct: 614 KEQGACEWFNRTKPSKGILVIDT---YKKTVDEL-VSVGLEMDWESLRADILKYGMRNSV 669

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A  P  + + + GV+ SI+P  + + +K       + VN  +       D W+  M  
Sbjct: 670 LTAQMPGESSSVLLGVTNSIEPPRKIVSIKG------SAVNKVIAIAPGATD-WETLMSY 722

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            L                       A+++D +  I+  +  QK+  Q+ S N+Y D
Sbjct: 723 KL-----------------------AYDVDRIEWIKWVATMQKFFSQSISTNMYYD 755


>gi|326632982|ref|YP_004306571.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
 gi|321272176|gb|ADW80068.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
          Length = 776

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 170/776 (21%), Positives = 303/776 (39%), Gaps = 105/776 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  + ++ P     H+       +      E +
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDS-FEPPSLRFFHDHMVSVGAW------EDM 118

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFM 322
            A +  E     + V     + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 119 SAWITDEQFEALNQV-----IDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWT------PVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           I  A      +     G+G          PVR  GA  H       G +P+ +   D +V
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLESRSIADPVRN-GAFPHS------GKLPYYRHI-DRSV 285

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             N    R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N
Sbjct: 286 KANTQQTRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKN 345

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR------------GEIKVFRKISAVA 544
              TL S     ++H+ +  + E  +E     A++              +    K+SA  
Sbjct: 346 EDITLMSYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKE 405

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----------LNSS 593
           +    L +  ETG  +       N       +  +  +NLC EIT           L  +
Sbjct: 406 ILDTWLRIRMETGRMYAHHIGESNRHG--NFLDPIRMTNLCVEITQPTRPFHHITELYKT 463

Query: 594 SE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            E           E ++CNLG + L    +  +++      T    ++ +D +I+I  + 
Sbjct: 464 KEQLDQMKPEDIGEVSLCNLGGVVLGRMESLAEWE-----KTCYILLKFVDTIIEIQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               + +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA
Sbjct: 519 FPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA   F  +   +G+  ID+     +  DEL ++    + W+ L+  +   GMRNS 
Sbjct: 579 KEQGACEWFDRTKPSKGILVIDT---YKKTVDEL-VSVGLEMDWESLRADILKYGMRNSV 634

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A  P  + + + GV+ SI+P  + + +K       + VN  +       D W+  M  
Sbjct: 635 LTAQMPGESSSVLLGVTNSIEPPRKIVSIKG------SAVNKVIAIAPGATD-WETLMSY 687

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            L                       A+++D +  I+  +  QK+  Q+ S N+Y D
Sbjct: 688 KL-----------------------AYDVDRIEWIKWVATMQKFFSQSISTNMYYD 720


>gi|59897233|gb|AAX12028.1| ribonucleoside-diphosphate reductase alpha chain [Enterobacteria
           phage T5]
          Length = 776

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 170/776 (21%), Positives = 303/776 (39%), Gaps = 105/776 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  + ++ P     H+       +      E +
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDS-FEPPSLRFFHDHMVSVGAW------EDM 118

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFM 322
            A +  E     + V     + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 119 SAWITDEQFEALNQV-----IDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWT------PVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           I  A      +     G+G          PVR  GA  H       G +P+ +   D +V
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLESRSIADPVRN-GAFPHS------GKLPYYRHI-DRSV 285

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             N    R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N
Sbjct: 286 KANTQQTRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKN 345

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR------------GEIKVFRKISAVA 544
              TL S     ++H+ +  + E  +E     A++              +    K+SA  
Sbjct: 346 EDITLMSYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKE 405

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----------LNSS 593
           +    L +  ETG  +       N       +  +  +NLC EIT           L  +
Sbjct: 406 ILDTWLRIRMETGRMYAHHIGESNRHG--NFLDPIRMTNLCVEITQPTRPFHHITELYKT 463

Query: 594 SE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            E           E ++CNLG + L    +  +++      T    ++ +D +I+I  + 
Sbjct: 464 KEQLDQMKPEDIGEVSLCNLGGVVLGRMESLAEWE-----KTCYILLKFVDTIIEIQDYP 518

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               + +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA
Sbjct: 519 FPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLA 578

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA   F  +   +G+  ID+     +  DEL ++    + W+ L+  +   GMRNS 
Sbjct: 579 KEQGACEWFNRTKPSKGILVIDT---YKKTVDEL-VSVGLEMDWESLRADILKYGMRNSV 634

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A  P  + + + GV+ SI+P  + + +K       + VN  +       D W+  M  
Sbjct: 635 LTAQMPGESSSVLLGVTNSIEPPRKIVSIKG------SAVNKVIAIAPGATD-WETLMSY 687

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            L                       A+++D +  I+  +  QK+  Q+ S N+Y D
Sbjct: 688 KL-----------------------AYDVDRIEWIKWVATMQKFFSQSISTNMYYD 720


>gi|296270389|ref|YP_003653021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
 gi|296093176|gb|ADG89128.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
          Length = 938

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 138/578 (23%), Positives = 245/578 (42%), Gaps = 46/578 (7%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 140 FSFNSPVWFNVGTASPQQVSACFILSVDDTMESILEWYKEEGLIFKGGSGAGVNLSRIRS 199

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ EF++ +  
Sbjct: 200 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFIESKAR 258

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              + ++   +  A +  DL  + +     QNA  ++     VSD       EF  A EN
Sbjct: 259 ---EEQKIRVLRDAGFDMDLGGRDIVSVQYQNANNSV----RVSD-------EFMRAVEN 304

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             +   R  +  +V  ++ A  L+RKM    +E G P I + D  N        G + +S
Sbjct: 305 GGKFGLRARLTGEVIEEVDARELFRKMAQAAWECGDPGIQYDDTINDWHTCPESGRITAS 364

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL SINL+    ++  FD +     +   +  +D  I    
Sbjct: 365 NPCSEYVHLDNSS-----CNLASINLMKFLRDDDTFDVESFTKMVELIITAMDISITFAD 419

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              +K  ++    R +G+G     + L      Y S     +A      ++  A   S E
Sbjct: 420 FPTQKIAETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTAVAYRRSAE 479

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT----SRLPWDELKKRVKTI 756
           LA+  G Y  ++ +           +    ++R   AM+      +   WD   K  +  
Sbjct: 480 LAEVVGPYQGYQRNAEPHKRVIRKHVAANTQLRTYEAMDSAIHAEATRQWDRCVKLGEKH 539

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P    + +K  +  G   +VN  +   L++  
Sbjct: 540 GYRNAQVSLLAPTGTIGLMMDCDTTGIEPDLALVKIKKLVGGGSMKIVNQTVPRALRKLG 599

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWI 867
             DE + + ++Y     G++   P  LK  H   F+       I PM  +   +  Q ++
Sbjct: 600 YQDEQIEAIVEYIS-EHGHVVDAP-GLKPEHYAVFDCAMGERAIAPMGHVRMMAAVQPFL 657

Query: 868 DQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
             A S  + L E +  + ++ +Y   W +GLK     R
Sbjct: 658 SGAISKTVNLPESATVEDIEQVYMAGWKLGLKALAVYR 695


>gi|313820320|gb|EFS58034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA1]
 gi|313822873|gb|EFS60587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA2]
 gi|314925207|gb|EFS89038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA3]
          Length = 950

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 248/589 (42%), Gaps = 55/589 (9%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518
           ++ +    D  R   D   A +  DL  + +     QNA  ++   D      + +GK F
Sbjct: 246 IETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVE-HGKPF 301

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +       + D    KV   + A  L+ K+    +E   P + + D  N      + G 
Sbjct: 302 GLMSRT---EPD----KVLDTVDAKELFGKIAQAAWECADPGLQYDDTINAWHTTPNSGR 354

Query: 579 VHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVI 636
           +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K    +   +  +D  I
Sbjct: 355 INASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKFTRAVELVITAMDISI 409

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  E   K+    R +G+G     + L  L + Y S     +A      ++  +  
Sbjct: 410 CFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALAAAITSLMTGVSYR 469

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-----------ELAMNRTSRLP 745
            S ELA   G Y  +      +   P  ++  +A  RD           + A+   ++  
Sbjct: 470 RSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHPLHNNDTAVLTAAKAE 522

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
           WD++ K   T G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 523 WDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGGSMQIVN 582

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   LK      E     + Y   + G++   P DL + H   F+       I PM  
Sbjct: 583 QTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEVFDCAMGTRFIAPMGH 640

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R
Sbjct: 641 VRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYR 689


>gi|289425582|ref|ZP_06427359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289427199|ref|ZP_06428915.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|295130586|ref|YP_003581249.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|289154560|gb|EFD03248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289159668|gb|EFD07856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|291375818|gb|ADD99672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|313772155|gb|EFS38121.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL074PA1]
 gi|313792149|gb|EFS40250.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA1]
 gi|313810019|gb|EFS47740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA1]
 gi|313818553|gb|EFS56267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA2]
 gi|313825195|gb|EFS62909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA1]
 gi|313830347|gb|EFS68061.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL007PA1]
 gi|313833721|gb|EFS71435.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL056PA1]
 gi|313838725|gb|EFS76439.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL086PA1]
 gi|314960010|gb|EFT04112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA2]
 gi|314962807|gb|EFT06907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA1]
 gi|314973352|gb|EFT17448.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA1]
 gi|314976029|gb|EFT20124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL045PA1]
 gi|314978432|gb|EFT22526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA2]
 gi|314983949|gb|EFT28041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA1]
 gi|314988133|gb|EFT32224.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA2]
 gi|314989937|gb|EFT34028.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA3]
 gi|315078024|gb|EFT50075.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA2]
 gi|315080649|gb|EFT52625.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL078PA1]
 gi|315084321|gb|EFT56297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA2]
 gi|315085663|gb|EFT57639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA3]
 gi|315088915|gb|EFT60891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA1]
 gi|315095897|gb|EFT67873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL038PA1]
 gi|327326179|gb|EGE67969.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA2]
 gi|327331946|gb|EGE73683.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA3]
 gi|327443147|gb|EGE89801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA2]
 gi|327445932|gb|EGE92586.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA2]
 gi|327448088|gb|EGE94742.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA1]
 gi|327453133|gb|EGE99787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL092PA1]
 gi|328753478|gb|EGF67094.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL020PA1]
 gi|328760860|gb|EGF74426.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL099PA1]
 gi|332675426|gb|AEE72242.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes 266]
          Length = 950

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 248/589 (42%), Gaps = 55/589 (9%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518
           ++ +    D  R   D   A +  DL  + +     QNA  ++   D      + +GK F
Sbjct: 246 IETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVE-HGKPF 301

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +       + D    KV   + A  L+ K+    +E   P + + D  N      + G 
Sbjct: 302 GLMSRT---EPD----KVLDTVDAKELFGKIAQAAWECADPGLQYDDTINAWHTTPNSGR 354

Query: 579 VHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVI 636
           +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K    +   +  +D  I
Sbjct: 355 INASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKFTRAVELVITAMDISI 409

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  E   K+    R +G+G     + L  L + Y S     +A      ++  +  
Sbjct: 410 CFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALAAAITSLMTGVSYR 469

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-----------ELAMNRTSRLP 745
            S ELA   G Y  +      +   P  ++  +A  RD           + A+   ++  
Sbjct: 470 RSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHPLHNNDTAVLTAAKAE 522

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
           WD++ K   T G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 523 WDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGGSMQIVN 582

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   LK      E     + Y   + G++   P DL + H   F+       I PM  
Sbjct: 583 QTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEVFDCAMGTRFIAPMGH 640

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R
Sbjct: 641 VRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYR 689


>gi|314955749|gb|EFT00149.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA1]
          Length = 950

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 143/604 (23%), Positives = 240/604 (39%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ LS+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQLSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G Y  +      +   P  ++  +A  RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|46401832|ref|YP_006924.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
 gi|45775010|gb|AAS77142.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
          Length = 811

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 170/776 (21%), Positives = 303/776 (39%), Gaps = 105/776 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  + ++ P     H+       +      E +
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDS-FEPPSLRFFHDHMVSVGAW------EDM 153

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFM 322
            A +  E     + V     + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 154 SAWITDEQFEALNQV-----IDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWT------PVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           I  A      +     G+G          PVR  GA  H       G +P+ +   D +V
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLESRSIADPVRN-GAFPHS------GKLPYYRHI-DRSV 320

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             N    R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N
Sbjct: 321 KANTQQTRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKN 380

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR------------GEIKVFRKISAVA 544
              TL S     ++H+ +  + E  +E     A++              +    K+SA  
Sbjct: 381 EDITLMSYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKE 440

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-----------LNSS 593
           +    L +  ETG  +       N       +  +  +NLC EIT           L  +
Sbjct: 441 ILDTWLRIRMETGRMYAHHIGESNRHG--NFLDPIRMTNLCVEITQPTRPFHHITELYKT 498

Query: 594 SE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            E           E ++CNLG + L    +  +++      T    ++ +D +I+I  + 
Sbjct: 499 KEQLDQMKPEDIGEVSLCNLGGVVLGRMESLAEWE-----KTCYILLKFVDTIIEIQDYP 553

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               + +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA
Sbjct: 554 FPTMEYTAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLA 613

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA   F  +   +G+  ID+     +  DEL ++    + W+ L+  +   GMRNS 
Sbjct: 614 KEQGACEWFNRTKPSKGILVIDT---YKKTVDEL-VSVGLEMDWESLRADILKYGMRNSV 669

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A  P  + + + GV+ SI+P  + + +K       + VN  +       D W+  M  
Sbjct: 670 LTAQMPGESSSVLLGVTNSIEPPRKIVSIKG------SAVNKVIAIAPGATD-WETLMSY 722

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            L                       A+++D +  I+  +  QK+  Q+ S N+Y D
Sbjct: 723 KL-----------------------AYDVDRIEWIKWVATMQKFFSQSISTNMYYD 755


>gi|297626482|ref|YP_003688245.1| Vitamin B12-dependent ribonucleotide reductase
           (ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922247|emb|CBL56819.1| Vitamin B12-dependent ribonucleotide reductase
           (Ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 963

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 245/583 (42%), Gaps = 53/583 (9%)

Query: 350 HFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R
Sbjct: 133 YFSFNSPVWFNVGTASPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIR 192

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRK 467
                +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ + 
Sbjct: 193 SSKELLRSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKA 252

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDLYGKEFEIAY 522
              D  R   D   A +  DL  + +T    QNA  ++   DE +  + D  G  F +  
Sbjct: 253 REEDKIRALRD---AGFDMDLGGRDITSVQYQNANNSVRVSDEFMQAVQD--GTPFGLKA 307

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   +V  ++ A  LW K+    +E   P + +    N        G +++S
Sbjct: 308 --------RTTGEVIEEVDAKDLWGKIAKAAWECADPGMQYDGTINSWHTTPESGRINAS 359

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E ++L++SS     CNL S+NLL     ++ FD +     +   +  +D  I    
Sbjct: 360 NPCSEYMSLDNSS-----CNLASLNLLKFLRDDDSFDTELFTKAVELIITAMDISICFAD 414

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              E    +   +R +G+G     + L  L   Y S     +A      ++  A   S E
Sbjct: 415 FPTEAIGDTTRDYRQLGIGYANLGALLMALGKGYDSEGGRALAAAITSLMTGTAYRRSAE 474

Query: 701 LAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDELA-----MNRTSRLPWDELKKRVK 754
           +A   G Y  + + +   Q V  I   G   E  D +A     + R ++  WD+     +
Sbjct: 475 MAGVVGPYKGYARNAESHQRV--IRKHGAANEALDNVAAIDTEVRRAAQHEWDKADVMGQ 532

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    +APT TI  +    +  I+P +  +  K  + G     +  +VN   +R
Sbjct: 533 ANGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG----SMQMVNHTVER 588

Query: 814 DL----WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASR 862
            L    +D      +  +    GN+   P  L++     F+       I PM  +   + 
Sbjct: 589 ALTNLGYDATTRQSIVDYVAEKGNVVGAP-GLREADYEVFDTAMGVRAIAPMGHVRMMAA 647

Query: 863 RQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            Q ++  A S  + L E +  +++  +Y Q W +GLK     R
Sbjct: 648 VQPFLSGAISKTVNLPESATVEEIADVYMQGWKLGLKALAVYR 690


>gi|313807511|gb|EFS45998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA2]
          Length = 950

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 248/589 (42%), Gaps = 55/589 (9%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518
           ++ +    D  R   D   A +  DL  + +     QNA  ++   D      + +GK F
Sbjct: 246 IETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVE-HGKPF 301

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +       + D    KV   + A  L+ K+    +E   P + + D  N      + G 
Sbjct: 302 GLMSRT---EPD----KVLDTVDAKELFGKIAQAAWECADPGLQYDDTINAWHTTPNSGR 354

Query: 579 VHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVI 636
           +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K    +   +  +D  I
Sbjct: 355 INASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKFTRAVELVITAMDISI 409

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  E   K+    R +G+G     + L  L + Y S     +A      ++  +  
Sbjct: 410 CFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALAAAITSLMTGVSYR 469

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-----------ELAMNRTSRLP 745
            S ELA   G Y  +      +   P  ++  +A  RD           + A+   ++  
Sbjct: 470 RSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHPLHNNDTAVLTAAKAE 522

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
           WD++ K   T G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 523 WDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGGSMQIVN 582

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   LK      E     + Y   + G++   P DL + H   F+       I PM  
Sbjct: 583 QTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEVFDCAMGTRFIAPMGH 640

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R
Sbjct: 641 VRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYR 689


>gi|323488918|ref|ZP_08094155.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323397310|gb|EGA90119.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 852

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 197/449 (43%), Gaps = 61/449 (13%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-------IKVFRKIS 541
           FM  V  +A + L  P   S   D    E  +  E ++   D  E       ++V+R + 
Sbjct: 379 FMTAVENDADFELRFPAVESYSKD----EMAVYNEKWQEVGDVREWERMGHGVRVYRTMK 434

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVC 600
           A  LW  +      +  P I F D  N ++     G  V ++N C E  L   S    VC
Sbjct: 435 ARELWNLINICATYSAEPGIFFIDNANEKTNAAAYGQKVVATNPCGEQPLAPYS----VC 490

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL ++NL A FA+ +    D++ L  T+R  VR+ DNVID   + +E+ +      R +G
Sbjct: 491 NLAAVNL-AQFADPKTKTVDFESLKETVRVGVRMQDNVIDATPYFLEENQVQALGERRVG 549

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L      Y SPE  E+ DE  + I+  A   S +LA ERG++    G+  +
Sbjct: 550 LGVMGLADLLIYCDREYGSPEGNELVDEIFKTIATAAYEVSTDLAAERGSFPFLVGNSDE 609

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +           A +R         +   + +++ V   G+RNS+ + +APT +   + G
Sbjct: 610 E----------TAALRKAFTETGFMQGMPEHVREAVLEKGIRNSHLLTVAPTGSTGTMVG 659

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDGSIGNIER 836
           VS  ++P Y   Y +S   G F  V + +V+E LK     DE                  
Sbjct: 660 VSTGLEPYYSFTYYRSGRLGKFIEVKADIVSEYLKNNPEADE------------------ 701

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAW 893
             ++L K   T+ ++ P    +     Q+WID   S++  ++ P G   ++++ +Y + +
Sbjct: 702 --ENLPKAFVTSMDLAPEAHADVQCIIQRWID--SSISKTVNAPRGYTVEQVEGVYERLY 757

Query: 894 LMGLK--TTYYLRSRSATSVEKSTLKGVD 920
             G K  T Y   SR +  +   TLK  D
Sbjct: 758 KGGAKGGTVYVDGSRDSQVL---TLKAED 783



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 10/160 (6%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--T 363
           IE P   F      R A GLA  ET  EKR     +FY  L    F+ +   L+ +G  T
Sbjct: 123 IEKPMEVFYEQIAKRNATGLASVETTPEKRQEWFEKFYQQLVGLKFIPAGRVLYGAGADT 182

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 183 DVTYFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 242

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +L         V QGG R+GA    L  WH D+ EF+
Sbjct: 243 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIAEFI 282


>gi|238063474|ref|ZP_04608183.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
 gi|237885285|gb|EEP74113.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
          Length = 972

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 142/586 (24%), Positives = 242/586 (41%), Gaps = 62/586 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 135 FSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILDWYKEEGLIFKGGSGSGVNLSRIRS 194

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 195 -SRELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVITKAR 253

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL    +     QNA  ++     VSD       EF  A EN
Sbjct: 254 EEDKIRALRD---AGFDMDLGGNDIVSVQYQNANNSV----RVSD-------EFMSAVEN 299

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +  +    I A  L+R +    +E   P + + D  N        G + +S
Sbjct: 300 GGGFDLRGRLDGQTIETIEAKKLFRTIAQAAWECADPGLQYDDIINDWHTCPETGRITAS 359

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    A+  F+ +K   ++   +  +D  I    
Sbjct: 360 NPCSEYLHLDNSS-----CNLASLNLMKFLRADGGFEVEKFVRSVEFVITAMDISICFAD 414

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L    +PY S +   +A      ++  A   S E
Sbjct: 415 FPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGRSVAAAITSLMTGTAYRRSAE 474

Query: 701 LAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           LA   GAY  +            K +  +  + P  ++          A+ R +   W +
Sbjct: 475 LAGIVGAYDGYARNAEPHKRVMRKHAAANDAIKPAGTVA--------TAIQREATKQWTQ 526

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
             K     G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  +
Sbjct: 527 GNKIGDRYGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTV 586

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L+    + E  +  +  H    G++   P  LK  H   F+       I PM  +  
Sbjct: 587 PRALRSLG-YPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRM 644

Query: 860 ASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +  Q +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 645 MAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYR 690


>gi|196230496|ref|ZP_03129358.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
 gi|196225426|gb|EDY19934.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
          Length = 1043

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 152/628 (24%), Positives = 254/628 (40%), Gaps = 97/628 (15%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+ +V D++  I       AML KY  G G+D + +R     + G  G+  G 
Sbjct: 199 YPQGSACFIQSVDDNMEDIMRLAMSEAMLFKYGSGTGSDLSTLRSTREKLSG-GGRPSGP 257

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR---THDMN 480
           + FLKV +  A  V  GGK R+ A    L+ WH D+EEF++ +  T ++++         
Sbjct: 258 LSFLKVYDQVANVVKSGGKTRRAAKMNTLKDWHPDIEEFIEAK--TKEEKKAWALIEQGY 315

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
             ++  D +   + QN   ++   DE  +   + GKE+      + ++   G  K   K 
Sbjct: 316 DGSYNGDAYGSIMYQNENLSVRVSDEFMNAA-VEGKEW------WTKRVTDG--KPCEKK 366

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A AL RK+       G P + F    +     +  G  +S+N C+E     ++     C
Sbjct: 367 EAKALLRKIAEGTHLCGDPGVQFDTTIDKWHTCKGTGRQNSTNPCSEYLFLDNT----AC 422

Query: 601 NLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL S+NLL    A+  FD ++  + +R  +   + ++D   + I++  +++H  R +GLG
Sbjct: 423 NLASLNLLKFKKADGGFDVERFKAAVRVFITAQEIIVDNASYPIKEIAENSHIFRTLGLG 482

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                + +    + Y + E   +A      ++ HA   S +LA+  G +  +K +     
Sbjct: 483 YANLGALIMSYGLGYDTDEGRALAGAITSIMTGHAYEQSAKLAKTMGPFPGYKDTRASGV 542

Query: 720 VFPIDSI--GLLAEVRDELAMNRTSRLP---------------WDELKKRVKTIGMRNSN 762
              +DS     + EV D L  +  SR+                WD    + K  G RN+ 
Sbjct: 543 KKTVDSTNESYMLEVID-LHRSHVSRIQDSDRFGYLKEEAQKCWDGALAQGKKHGYRNAQ 601

Query: 763 CMAIAPTATIANI--CG------------------------VSQSIDPSYQNL-YVKSNM 795
              +APT TI  +  C                         V+Q++ P+ QNL Y  + +
Sbjct: 602 VTVLAPTGTIGFLMDCDTTGIEPDIALVKYKLLAGGGMLKIVNQTVKPALQNLGYSFAEI 661

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE--IDP 853
            G    ++ F               I D+   DG+      IP  LK  H   F+    P
Sbjct: 662 EGVVAHIDKF-------------DTIEDVTDEDGTT-----IPSGLKPEHLPVFDCAFKP 703

Query: 854 MWLIESASRR---------QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                S   R         Q ++  A S  + L +E + + +   Y + W +GLK     
Sbjct: 704 HRGSRSLHYRGHIRMMAAAQPFLSGAISKTVNLPEEATVEDIVNTYVEGWQLGLKAIAIY 763

Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTD 930
           R  S  S   +  K  D G   AV   D
Sbjct: 764 RDGSKRSAPLNVKKTKDMGTAEAVSDVD 791


>gi|169829015|ref|YP_001699173.1| ribonucleotide-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168993503|gb|ACA41043.1| Vitamin B12-dependent ribonucleotide reductase [Lysinibacillus
           sphaericus C3-41]
          Length = 866

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 47/386 (12%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLN 591
           +I+ +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 437 KIRTYRTIKAKELWNLINVCATYSAEPGIFFIDNANDMTNAKAYGQSVVATNPCGEQPLA 496

Query: 592 SSSEETAVCNLGSINLLAHFAN--NQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
             S    VCNL ++NL A FAN  NQ  DY+ L  T+R  VR+ DNVID   + +E+ + 
Sbjct: 497 PYS----VCNLAAVNL-AQFANKDNQTVDYEALRETVRVGVRMQDNVIDATPYFLEENRV 551

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S     + DE  + I+  A  AS ELA+ERG++
Sbjct: 552 QALGERRVGLGVMGLADLLIYCEKEYGSEAGNALVDEIFKTIAETAYEASTELAKERGSF 611

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
               G+  ++           A +R          ++P   +K+++   G+RNS+ + +A
Sbjct: 612 PFLVGATDEE----------TARLRKAFTETGFMEKMP-AHIKEQILATGIRNSHLLTVA 660

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GV+  ++P +   Y +S   G F  V + +V E   R              
Sbjct: 661 PTGSTGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDR-------------- 706

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KK 884
                + E    +L +   TA E+ P    +     QKWID   S++  ++ P G   ++
Sbjct: 707 -----HPEANEQELPEWFVTAMELKPEAHADVQCIIQKWID--SSISKTVNAPKGYTVQQ 759

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSA 908
           ++ +Y + +  G K  T Y   SR +
Sbjct: 760 VEKVYERLYKGGAKGGTVYVDGSRDS 785



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VP 377
           R A GLA+ E   EKR     +FY+ L S  F+ +   ++ +G+       +C++   V 
Sbjct: 148 RNATGLAIVEKTPEKRQEWFEKFYDQLVSLKFIPAGRVIYGAGSETDVTFFNCYVMPFVA 207

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 208 DSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 267

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 268 VEQGGSRRGAQMIMLADWHPDIVEFI 293


>gi|313801898|gb|EFS43132.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA2]
          Length = 950

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 146/592 (24%), Positives = 249/592 (42%), Gaps = 61/592 (10%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDL---YG 515
           ++ +    D  R   D   A +  DL  + +     QNA  ++     VSD       +G
Sbjct: 246 IETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSV----RVSDAFMAAVGHG 298

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           K F +       + D    KV   + A  L+ K+    +E   P + + D  N      +
Sbjct: 299 KPFGLMSRT---EPD----KVLDTVDAKELFGKIAQAAWECADPGLQYDDTINAWHTTPN 351

Query: 576 VGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLD 633
            G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K    +   +  +D
Sbjct: 352 SGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKFTRAVELVITAMD 406

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             I       E   K+    R +G+G     + L  L + Y S     +A      ++  
Sbjct: 407 ISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALAAAITSLMTGV 466

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-----------ELAMNRTS 742
           +   S ELA   G Y  +      +   P  ++  +A  RD           + A+   +
Sbjct: 467 SYRRSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHPLHNNDTAVLTAA 519

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFT 800
           +  WD++ K   T G RN+    +APT TI  +    +  I+P +  +  K  +  G   
Sbjct: 520 KAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGGSMQ 579

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDP 853
           +VN  +   LK      E     + Y   + G++   P DL + H   F+       I P
Sbjct: 580 IVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEVFDCAMGTRFIAP 637

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           M  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R
Sbjct: 638 MGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYR 689


>gi|315108335|gb|EFT80311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA2]
          Length = 950

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 142/604 (23%), Positives = 240/604 (39%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G Y  +      +   P  ++  +A  RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|50842509|ref|YP_055736.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes KPA171202]
 gi|50840111|gb|AAT82778.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|313764463|gb|EFS35827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA1]
 gi|313812950|gb|EFS50664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA1]
 gi|313816001|gb|EFS53715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA1]
 gi|313827770|gb|EFS65484.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA2]
 gi|314915455|gb|EFS79286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA4]
 gi|314918261|gb|EFS82092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA1]
 gi|314920074|gb|EFS83905.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA3]
 gi|314931597|gb|EFS95428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL067PA1]
 gi|314958164|gb|EFT02267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA1]
 gi|314967825|gb|EFT11924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA1]
 gi|315098528|gb|EFT70504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA2]
 gi|315101114|gb|EFT73090.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA1]
 gi|315105661|gb|EFT77637.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA1]
 gi|327450790|gb|EGE97444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA3]
 gi|327453865|gb|EGF00520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA2]
 gi|328754209|gb|EGF67825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA1]
 gi|328754540|gb|EGF68156.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA2]
          Length = 950

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 142/604 (23%), Positives = 240/604 (39%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G Y  +      +   P  ++  +A  RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|312879665|ref|ZP_07739465.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
 gi|310782956|gb|EFQ23354.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
          Length = 1095

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 36/293 (12%)

Query: 298 LQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFM 352
           L++L  RY      G+  E P+  F+RVA  +A  E     + +  A  FY L++   F+
Sbjct: 13  LKVLEKRYLRRDEAGNLAETPEGLFVRVAEAVAAPEAAHGGDPKAWAEVFYGLMARGDFL 72

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G D++ +R  G 
Sbjct: 73  PNSPTLMNAGTPLGQLSACFVLPVGDSMEEIFDALKHTALVHKSGGGTGFDFSDLRPAGD 132

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T+G + G + FL++ + T   + QGG R+GA    LE  H DV +F+  +   G  
Sbjct: 133 RVRSTSGVASGPLSFLELFDRTTEVIKQGGMRRGANMGILEASHPDVMDFVRAKTEQG-- 190

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  + N +  + D F++ V  +  W L +P                           G
Sbjct: 191 --RLGNFNISVGVTDRFLRAVRDDGSWDLVNPRT-------------------------G 223

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E    R + A  LWR ++   + TG P + F D     +P  H+G + S+N C
Sbjct: 224 E--TVRTLPARELWRLLVDSAWRTGDPGLVFLDRIEEDNPTPHLGRLRSTNPC 274



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 42/218 (19%)

Query: 600 CNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           CNLGSINL+   A+   + D++KL  T+R AVR LD+VID NC+ + +  +     R IG
Sbjct: 658 CNLGSINLV-RMADEAGELDWEKLDRTVRHAVRFLDDVIDANCYPLPEIAQRTRASRKIG 716

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG+   L L  + Y SPE++ +A E M FI      AS  L +ERGA+ +++GSL  
Sbjct: 717 LGIMGWADLLFLRRLRYGSPESLVLAGELMGFIRAVGHEASEALGEERGAFPAWEGSL-- 774

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                 R  R              +RN+    +APT TI+ + G
Sbjct: 775 --------------------HQRQGRR-------------LRNATVTTLAPTGTISLLAG 801

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            S  I+P++     +     D  V    L+N + QRDL
Sbjct: 802 CSSGIEPAFSLALRRRAFESDTLV----LLNPVFQRDL 835


>gi|255011258|ref|ZP_05283384.1| putative ribonucleoside reductase [Bacteroides fragilis 3_1_12]
          Length = 855

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 155/700 (22%), Positives = 288/700 (41%), Gaps = 109/700 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + + + 
Sbjct: 25  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 84

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  G
Sbjct: 85  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 144

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 145 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 203

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P              
Sbjct: 204 SEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGRKYTQQYP-------------- 245

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                      D       ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 246 ----------IDSDHPTTVKEIDASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 295

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD++     +  A 
Sbjct: 296 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFELFHKHVALAQ 351

Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+           ++  HT R +              G+G+     
Sbjct: 352 RIMDDIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGD 411

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA + +++  + ++  A  +SV++A+ERGA+  +         F    
Sbjct: 412 MLAALGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAFDVYDTEREKNNPF---- 467

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 468 INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 514

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836
           +  +Y  +  ++ + T V    V+E    D ++E ++   K+        +D +    + 
Sbjct: 515 FLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYTQE 572

Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
             D+L        AT+ ++D +  +    + QKW+D + S+ + L     ++L + +Y +
Sbjct: 573 EVDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVE 632

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R  S + V  S     D K    P   P
Sbjct: 633 AWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 672


>gi|327330249|gb|EGE71998.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL097PA1]
          Length = 950

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 142/604 (23%), Positives = 240/604 (39%), Gaps = 85/604 (14%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMAAVEQGKPFGLMS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPD--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     N+ FD +K 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDENDHFDVEKF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   K+    R +G+G     + L  L + Y S     
Sbjct: 395 TRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD------- 734
           +A      ++  +   S ELA   G Y  +      +   P  ++  +A  RD       
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYGGYS-----ENAEPHQAV--MARHRDANRQVHP 507

Query: 735 ----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               + A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +
Sbjct: 508 LHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLV 567

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             K  +  G   +VN  +   LK      E     + Y   + G++   P DL + H   
Sbjct: 568 KFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADN-GSVVGAP-DLDEAHYEV 625

Query: 849 FE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
           F+       I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK  
Sbjct: 626 FDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKAL 685

Query: 901 YYLR 904
              R
Sbjct: 686 AVYR 689


>gi|329113327|ref|ZP_08242108.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697152|gb|EGE48812.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 255

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 11/206 (5%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G   L +RY L   G      Q  F RVA          ++     Y+ +S 
Sbjct: 50  RDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGADAAHAQR----IYDYISK 100

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 101 HWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYWGNLR 160

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G ++ G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+ 
Sbjct: 161 SIGENV-GRNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRRP 219

Query: 469 TGDD-RRRTHDMNTANWIPDLFMKRV 493
           TG D  R+  +++    + D FM+ V
Sbjct: 220 TGGDPNRKALNLHHGVLVSDAFMRAV 245


>gi|13470431|ref|NP_101999.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           loti MAFF303099]
 gi|14021172|dbj|BAB47785.1| ribonucleotide reductase [Mesorhizobium loti MAFF303099]
          Length = 1312

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 140/586 (23%), Positives = 243/586 (41%), Gaps = 92/586 (15%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 244 SSYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG- 302

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF+D + N        
Sbjct: 303 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVNEEQKVASL 362

Query: 469 -TGDDRRRTH---------------------DMNTA----------NWIPDLFMKRVTQN 496
            TG    + H                      +NTA          + +P+ ++ RV Q 
Sbjct: 363 VTGSKIVKKHLEAIMKACVNCEGNGEDCFDPAINTALKREIKAAKKSAVPENYIYRVIQF 422

Query: 497 A-------GWTLFSPDEVSDLH-DLYGKEFEIAY---ENYERQAD---------RGEIKV 536
           A        +  +  D  SD +  + G+    +    +N+ R  +         R + KV
Sbjct: 423 AKQGYKSMSFKTYDTDWDSDAYLTVSGQNSNNSVSLKDNFLRAVEDDADWHLTARKDGKV 482

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N        G + +SN C+E       ++
Sbjct: 483 LKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF---LDD 539

Query: 597 TAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           TA CNL SINLL +  A+   D      T+R    VL+  + +     ++  K ++ +R 
Sbjct: 540 TA-CNLASINLLPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKLSYEYRT 598

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF---- 711
           +GLG       L    IPY S E   I       ++  A S S E+A E GA+  +    
Sbjct: 599 LGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGVAYSTSAEMASELGAFPDYDRNA 658

Query: 712 -----------KGSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                      + +  D+  +    ++ + L+A    + A+   ++  WD   +  +  G
Sbjct: 659 QNMLRVMRNHRRAAYGDKDGYEKLAVNPVPLVASDLKQQALAEHAKAAWDRAIELGEEHG 718

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDL 815
            RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+    
Sbjct: 719 YRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG- 777

Query: 816 WDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
           + E+ I++++ +    GN+ + P  +   + A  F  D +  + +A
Sbjct: 778 YSESQIAEIEAYAVGHGNLNQAPGINPGSLKAKGFSDDKIAALNAA 823


>gi|317128403|ref|YP_004094685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473351|gb|ADU29954.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
          Length = 855

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 203/478 (42%), Gaps = 68/478 (14%)

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE------ 533
           N +  I   FM+ V  +  + L  PD    + +   KE E     +    D  E      
Sbjct: 369 NISVCITKEFMEAVDNDEDYALRFPD----VENYNEKEMEAYNREWHEYGDVREWEALGF 424

Query: 534 -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
            ++ +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 425 GVRTYRNIKAKELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLA 484

Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             S    VCNL ++NL  +A   N   D+ KL  T+ T VR+ DNVID   + +E   K 
Sbjct: 485 PYS----VCNLAAVNLAEMADKDNKVVDFKKLEQTVATGVRMQDNVIDATPYFLEDNTKQ 540

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S E   + D+  E I+  A   S+ELA+E+G++ 
Sbjct: 541 AKGERRVGLGVMGLHDLLIYTETVYGSEEGNALVDKIFETIATTAYRTSIELAKEKGSFP 600

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-----RLPWDELKKRVKTIGMRNSNCM 764
                           +G   +  + L M   +     ++P D +++ +   G+RNS+ +
Sbjct: 601 YL--------------VGNNEQETNHLRMKYINTGYMKKMPED-VRQGILQYGIRNSHLL 645

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            +APT +   + GVS  ++P +   Y +S   G F  V +             E + S L
Sbjct: 646 TVAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKA-------------EILQSYL 692

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           + H       E  P++L +   ++ E+ P    +     Q+W+D   SL+  ++ P G  
Sbjct: 693 ERHP------EADPNELPEWFVSSMELSPEAHADVQCVIQRWVD--SSLSKTVNAPRGYT 744

Query: 885 LD---FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-DPNSSTH 936
           +D    +Y + +  G K  T Y   SR +  +   TLK  +  + AV +  +P   T 
Sbjct: 745 VDQVKKVYERLYKGGAKGGTVYVDGSRDSQVL---TLKAEENDMYAVELAGEPEQDTE 799



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VP 377
           R A GLA  E + +K+     +FY+ L + +F+ +   L+ +G        +C++   V 
Sbjct: 136 RNARGLAEVEVDPQKQVESFEKFYHELVNMNFVPAGRVLYGAGAETDVTYFNCYVMPFVA 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R   A   G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNALARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 256 VEQGGSRRGAQMIMLADWHPDILEFI 281


>gi|260892347|ref|YP_003238444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
 gi|260864488|gb|ACX51594.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
          Length = 955

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 153/316 (48%), Gaps = 46/316 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINLL       F ++KL   +  AVR LD+VI++N   +     +    R +GLG
Sbjct: 660 CNLGSINLLNMVDGAGFSWEKLREVVHLAVRFLDDVIEVNNFPVPAIAAATRRTRKVGLG 719

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG+  AL  L IPY S  A+ +  E M FI   A +AS +LA+ERG + +++ S++   
Sbjct: 720 VMGWADALFKLGIPYDSEAALGLGAEVMRFIREEARAASRQLAEERGTFPAWEDSVY--- 776

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +P                     LP            +RN+    IAPT +I+ I GVS
Sbjct: 777 -YP--------------------HLP------------LRNATLTTIAPTGSISAIAGVS 803

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL---WDEAMISDLKYHDGSIGNIER 836
             I+P +   Y +  + G   +V   +  E  +++      E +++ +    G++G    
Sbjct: 804 PGIEPVFALAYTRMVLDGKKLLVVDKVFQEYVEQNFPPSRREEIMAGVS-RTGNLGLCAE 862

Query: 837 ---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
              +P+D++++  TA EI P W +   +  Q++ D A S  + L  + S +++  I+ +A
Sbjct: 863 ELDLPEDMRRLFKTALEIAPEWHLRHQATFQQYTDNAVSKTINLPSDSSPEEVGQIFWKA 922

Query: 893 WLMGLK--TTYYLRSR 906
           + + +K  T Y   SR
Sbjct: 923 FELKVKGLTVYRTGSR 938



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 45/297 (15%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFF---------MRVAMGLALKETEKEKRAVEFYNLLSSF 349
           IL  RY      G+ +E P+  F              G + +E E+  R   F+ L++S 
Sbjct: 27  ILEGRYLKRDEAGNVVETPEEMFWRVARAVAEAEARFGASAQEVEEWAR--RFFELMASL 84

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G    QL++CF+  + D +  IF  L+  A++ K  GG G D++ +R 
Sbjct: 85  DFLPNSPTLINAGRELGQLAACFVLPIEDSIESIFETLKYAALIHKSGGGTGFDFSRLRP 144

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T G + G + F+++ N     + QGG R+GA    L   H D+ EF+  ++  
Sbjct: 145 KGDPVRSTGGVASGPVSFMRIFNAATEEIKQGGVRRGANMGILRADHPDIMEFVACKEEE 204

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G  R    + N +  + D F + + ++  W L                            
Sbjct: 205 GAFR----NFNISVAVTDAFFETLARSGEWELVF-------------------------- 234

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            RG  KV+R++ A  L+  ++      G P + F D  N  +P   +G + ++N C 
Sbjct: 235 -RG--KVYRRLPARELFDWIVQHAHANGEPGLLFLDAINRANPTPALGRIEATNPCV 288


>gi|110633685|ref|YP_673893.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110284669|gb|ABG62728.1| ribonucleoside-diphosphate reductase class II [Chelativorans sp.
           BNC1]
          Length = 1258

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 141/566 (24%), Positives = 234/566 (41%), Gaps = 97/566 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSQLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E F+D + N        
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEAFIDWKVNEEQKVAAL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    R H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVRKHLDAIMKACINCEGANDDCFDPAKNPALKREIKAAKKNAVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYENYERQAD-----RGE 533
           A  G+T      +  D  S+ +  + G+          +F  A EN     D     R +
Sbjct: 368 AKQGYTSIEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVEN---DGDWTLIRRID 424

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            K  + I A  LW K+    + +  P + F    N        G + +SN C+E      
Sbjct: 425 GKPGKTIKARDLWEKIGYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEYMF--- 481

Query: 594 SEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            ++TA CNL SINLLA+   + + D +    ++R    VL+  + +     ++  K ++ 
Sbjct: 482 LDDTA-CNLASINLLAYRGKDGRIDIEGYEHSVRLWTIVLEISVMMAQFPSKEIAKLSYE 540

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    IPY S E   I       ++  A + S E+A E GA+  ++
Sbjct: 541 YRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAAELGAFPDYE 600

Query: 713 ------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G         ++ + L AE   + A+   +R  WD   +  +
Sbjct: 601 RNADAMLRVMRNHRRAAHGLAEGYERLAVNPVPLKAEDCPDPALTAHARAAWDRALELGQ 660

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+ 
Sbjct: 661 KHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRT 720

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIP 838
              + E+ I++++ +    GN+ + P
Sbjct: 721 LG-YSESQIAEIEAYAVGHGNLNQAP 745


>gi|313149069|ref|ZP_07811262.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137836|gb|EFR55196.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 847

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 155/700 (22%), Positives = 288/700 (41%), Gaps = 109/700 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSG 398
           L   F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGRKYTQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVG 577
                      D       ++I A  LW+K++   +++  P + F D     S P  +  
Sbjct: 238 ----------IDSDHPTTVKEIDASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       FD++     +  A 
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTKDAYFDFELFHKHVALAQ 343

Query: 630 RVLDNVIDINCHTIEKA----------KKSNHTHRAI--------------GLGLMGFQS 665
           R++D++ID+    IE+           ++  HT R +              G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA + +++  + ++  A  +SV++A+ERGA+  +         F    
Sbjct: 404 MLAALGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAFDVYDTEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E    L         ++++KK     G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPAL---------YEDMKK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--------HDGSIGNIER 836
           +  +Y  +  ++ + T V    V+E    D ++E ++   K+        +D +    + 
Sbjct: 507 FLPVYKRRRKVNPNDTNVRVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRYTQE 564

Query: 837 IPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQ 891
             D+L        AT+ ++D +  +    + QKW+D + S+ + L     ++L + +Y +
Sbjct: 565 EVDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R  S + V  S     D K    P   P
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 664


>gi|196019001|ref|XP_002118908.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
 gi|190577773|gb|EDV18606.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
          Length = 285

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 156/338 (46%), Gaps = 65/338 (19%)

Query: 629 VRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +R LDNV    ID    ++ KA+ S +  R++GLG+MGF S L    +P  S  A     
Sbjct: 1   MRFLDNVLQDFIDNAPDSMSKARYSAYRERSVGLGVMGFHSFLQSKMVPMESAMAKSWNL 60

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              + I+     AS  +++E+GA                          +EL +      
Sbjct: 61  RIFKHINDEVNKASKLISEEKGACPD----------------------AEELGLKE---- 94

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                         R +N  A+APTA+I+ I G  S  I+P   N Y + +++G F + N
Sbjct: 95  --------------RFTNKTAVAPTASISVIAGSTSPGIEPFNSNAYTQKSLTGSFNIRN 140

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L   L+ +D   E + S +  H+GS+ ++E +  D K +  TAFEI+  WLIE A+ R
Sbjct: 141 KYLKKLLQMKDKDTEEIWSSIMNHEGSVSHLEFLSKDEKDVFKTAFEINQQWLIEHAADR 200

Query: 864 QKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN+++     K +L+ ++  AW  G+K+ YY RS+S    +K         
Sbjct: 201 TPYISQAQSLNIFIPADIDKSELNKLHYLAWKKGVKSLYYCRSKSLQRADK--------- 251

Query: 923 LNAVPVTDPNSSTHSLGIPSS--CTSDT----ECEVCQ 954
              V +TD N   H L +  S   T D     EC  CQ
Sbjct: 252 ---VSITD-NVDKHQLKMKLSPVVTKDEDKYDECLACQ 285


>gi|262384874|ref|ZP_06078006.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293590|gb|EEY81526.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 855

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 158/684 (23%), Positives = 278/684 (40%), Gaps = 109/684 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y L      I  E P     R+A  +A  E +        E ++L 
Sbjct: 28  FTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLASEIARVEKKYPNPLSEQELFDLF 87

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  GG+
Sbjct: 88  DHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQADSYGAIIRIDEEQVQLMKRRGGV 147

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 148 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 206

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM     N G               Y +++ I
Sbjct: 207 AFIDAKMTEG----KVTGANVSVKIDDDFMNAAV-NGG--------------TYKQQYPI 247

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D       + I A  LW+K++   +++  P + F D     S P  +  + 
Sbjct: 248 ---------DSDSPVYVKDIDASGLWKKIIHNAWKSAEPGVLFWDTILRESVPDCYADLG 298

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L +INL ++  N       FDYD     +  A R+
Sbjct: 299 FRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTPDAYFDYDLFKKHVGLAQRI 354

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                          H  EK ++     R  G+G+      +
Sbjct: 355 MDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRKTLQGRRTGVGITAEGDMI 414

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA + A+   + ++  A  +SV LA+ERGA+  F     ++  F    I 
Sbjct: 415 AALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFEIFDAKREEKNPF----IN 470

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E    L         ++++ K     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 471 RLREADPAL---------YEDMLK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFL 517

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++ + +      V+E    D ++E ++   K+      N            +
Sbjct: 518 PVYKRRRKVNPNDSEARVDFVDETG--DAFEEYIVFHHKFVTWMQANGYSASKKYTQEEV 575

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
           E +        AT+ ++D +  +    R QKW+D + S+ + L ++ S + +D +Y +AW
Sbjct: 576 EELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPNDVSEELVDSLYVEAW 635

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
             G K     R  S + V  +T K
Sbjct: 636 RCGCKGCTVYRDGSRSGVLIATDK 659


>gi|330466451|ref|YP_004404194.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
 gi|328809422|gb|AEB43594.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
          Length = 954

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 142/586 (24%), Positives = 241/586 (41%), Gaps = 62/586 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 130 FSFNSPVWFNVGTPSPQQVSACFILAVDDSMDSILDWYKEEGLIFKGGSGSGVNLSRIRS 189

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 190 -SRELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVVTKAR 248

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL    +     QNA  ++     VSD       EF  A EN
Sbjct: 249 EEDKIRALRD---AGFDMDLGGADIVSVQYQNANNSV----RVSD-------EFMTAVEN 294

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +  +    I A  L+R +    +E   P + + D  N        G + +S
Sbjct: 295 GGGFDLRGRLDGQTIETIDAKKLFRTISQAAWECADPGLQYDDTINDWHTCPETGRITAS 354

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    A+  F+ +K   ++   +  +D  I    
Sbjct: 355 NPCSEYLHLDNSS-----CNLASLNLMKFLRADGGFEVEKFVKSVEFVITAMDISICFAD 409

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L    +PY S +   +A      ++  A   S E
Sbjct: 410 FPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSDQGRSLAAAITSLMTGTAYRRSAE 469

Query: 701 LAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           LA   GAY  +            K +  +  + P  ++          A+ R +   W +
Sbjct: 470 LAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGTVA--------TAVVREATRQWTQ 521

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
             K     G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  +
Sbjct: 522 GNKIGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTV 581

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L+    + E  +  +  H    G++   P  LK  H   F+       I PM  +  
Sbjct: 582 PRALRSLG-YPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRM 639

Query: 860 ASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +  Q +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 640 MAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYR 685


>gi|256391015|ref|YP_003112579.1| vitamin B12-dependent ribonucleotide reductase [Catenulispora
           acidiphila DSM 44928]
 gi|256357241|gb|ACU70738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Catenulispora acidiphila DSM 44928]
          Length = 994

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 141/579 (24%), Positives = 244/579 (42%), Gaps = 46/579 (7%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 163 FAFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILNWYREEGLIFKGGSGAGLNLSRIRS 222

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 223 -SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVQTKAR 281

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL  K +T    QNA  ++     V+D       EF  A +N
Sbjct: 282 EEDKIRALRD---AGFDMDLGGKDITSVQYQNANNSV----RVTD-------EFMHAVQN 327

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            ER   R     +V   + A  L+R +    +E   P + + D  N        G + +S
Sbjct: 328 TERFGLRARQTGEVIETLDAKQLFRDIAKAAWECADPGLQYDDTINAWHTNPETGRITAS 387

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E ++L++SS     CNL S+NL+     ++ FD +     +   +  +D  I    
Sbjct: 388 NPCSEYLSLDNSS-----CNLASLNLMKFLREDDTFDTETFVKMVELVITAMDISISFAD 442

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               +  ++    R +G+G     + L      Y S     IA      ++  A   S E
Sbjct: 443 FPTPEIGQTTRDFRQLGIGYANLGALLMATGHAYDSEGGRAIAAAITSLMTGVAYRRSAE 502

Query: 701 LAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTI 756
           LA   G Y+ F  +            D+        D +  +   SR  W    +     
Sbjct: 503 LAGVVGPYNGFARNAKPHAAVMRKHADAADAYVPFEDFDKQILELSRTEWQRGNEIGAAN 562

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +  V +  ++P    +  K  +  G   +VN+ +   LK+  
Sbjct: 563 GWRNAQASLLAPTGTIGFMMDVDTTGVEPDLALVKFKKLVGGGSMQIVNNTVPRALKRLG 622

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWI 867
              E + + ++Y  G  G++   P  LK  H + F+       I PM  +   +  Q ++
Sbjct: 623 YQQEQIEAIVEYI-GEQGHVVDAP-GLKPEHYSVFDCAMGERSIAPMGHVRMMAAIQPFL 680

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             A S  + + +E S + ++ IY + W +GLK     R+
Sbjct: 681 SGAISKTVNMPEEASIEDVEEIYFEGWKLGLKALAIYRN 719


>gi|302537351|ref|ZP_07289693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
 gi|302446246|gb|EFL18062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
          Length = 960

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 147/594 (24%), Positives = 250/594 (42%), Gaps = 59/594 (9%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 133 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 191

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 192 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 250

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F+  +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 251 DFIATKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 296

Query: 517 EFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A EN      R  +  +V  K+ A AL+RK+    +    P I +    N      
Sbjct: 297 EFMTAVENGTEFGLRARMTGEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCP 356

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
             G + +SN C+E + L+++S     CNL S+NL+         N  FD ++ A  +   
Sbjct: 357 ESGRITASNPCSEYMHLDNTS-----CNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRL 744
            ++  A   S ELA   G Y  + + +   + V     D+  +     D + A+   +  
Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADSHKRVMKQHADANAVAPRTEDLDNAIWAAATE 531

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGDFTV 801
            W ++ +  +  G RN+    +APT TI  A  C  +  ++P    +  K  +  G   +
Sbjct: 532 AWQDVLRLGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQI 590

Query: 802 VNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------I 851
           VN  +   L++    +   EA++S +  H    GN+   P  LK  H   F+       I
Sbjct: 591 VNGTVPQALRRMGYLEEQIEAIVSHIAEH----GNVVDAP-GLKTEHYEVFDCAMGERSI 645

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            PM  +   +  Q WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 646 SPMGHVRMMAAIQPWISGAISKTVNMPESATVEEIEEIYFEAWKLGVKALAIYR 699


>gi|47458851|ref|YP_015713.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mobile 163K]
 gi|47458179|gb|AAT27502.1| ribonucleotide reductase [Mycoplasma mobile 163K]
          Length = 842

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 173/403 (42%), Gaps = 55/403 (13%)

Query: 489 FMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           FM  V  N  + L  PD      +    Y KE+    +  E       +KV+  I A  L
Sbjct: 367 FMDAVKNNEMYELRFPDLEKFTKEQKAFYDKEWHNIGDVKEWGKLGYPVKVYSTIKAKEL 426

Query: 546 WRKMLTMLFETGHPWITFKDPCN-IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           W  +      +  P + F D  N + + Q +   V  +N C E  L   S    VCNL +
Sbjct: 427 WDLINLCSTYSAEPGVFFIDRANELTNAQSYGQKVVCTNPCGEQPLAPYS----VCNLAA 482

Query: 605 INLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           INL A+F +    + DY KL +T++  +R  DN+ID   + +++ K      R +GLG+M
Sbjct: 483 INL-ANFVDKHTGKIDYPKLENTVKLGIRFQDNIIDKTYYFLKENKDQALGERRVGLGVM 541

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L    + Y S EA ++ D+  E I+  A   S+EL +E+G++  F          
Sbjct: 542 GLHDMLIWSGLKYGSKEANKVVDKVFETIATSAYLTSIELGKEKGSFPFF---------- 591

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     V   L      +LP   +    KT  +RNS+ + IAPT +   + GVS  
Sbjct: 592 --------TSVERFLQSGYVKKLPQIVIDAFKKTKAIRNSHLLTIAPTGSTGTMAGVSTG 643

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD- 840
           ++P Y   Y +S   G F  V+  +V E K+   W                     P D 
Sbjct: 644 LEPYYAFKYFRSGRLGKFIEVDQDIVAEWKKIKNW---------------------PADK 682

Query: 841 -LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            L +I ++A ++ P   ++  +  Q+WID   S++  ++ P G
Sbjct: 683 ALPEIFSSAMDLKPEEHVKVQNLIQRWID--SSISKTVNAPKG 723



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 312 SRIEMP-QAFFMRVA--MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           S I  P + ++ ++A  +G A+ + E +K        L+  + + +   L+ +G++    
Sbjct: 119 SYISKPLEIYYEQIAKRVGFAISKDESKKHIEAITKELADKNIIPAGRILYGAGSKKEVT 178

Query: 368 LSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
             +C+ +  + D   GI     +   +    GG+G + + +R   A      GKS G + 
Sbjct: 179 FFNCYVMPMIQDSREGISKHRGQIMEIMSRGGGVGTNGSSLRPKDAIAISVGGKSSGAVS 238

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +L   +     V QGG R+GA    L  WH D+ EF+
Sbjct: 239 WLNDISQLTNLVQQGGSRRGAQMIMLGVWHPDIVEFI 275


>gi|150006676|ref|YP_001301419.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|255016563|ref|ZP_05288689.1| putative ribonucleoside reductase [Bacteroides sp. 2_1_7]
 gi|256842199|ref|ZP_05547703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298377646|ref|ZP_06987597.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
 gi|149935100|gb|ABR41797.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|256736083|gb|EEU49413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298265349|gb|EFI07011.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
          Length = 846

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 158/684 (23%), Positives = 278/684 (40%), Gaps = 109/684 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y L      I  E P     R+A  +A  E +        E ++L 
Sbjct: 19  FTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLASEIARVEKKYPNPLSEQELFDLF 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  GG+
Sbjct: 79  DHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM     N G               Y +++ I
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKIDDDFMNAAV-NGG--------------TYKQQYPI 238

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D       + I A  LW+K++   +++  P + F D     S P  +  + 
Sbjct: 239 ---------DSDSPVYVKDIDASGLWKKIIHNAWKSAEPGVLFWDTILRESVPDCYADLG 289

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L +INL ++  N       FDYD     +  A R+
Sbjct: 290 FRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTPDAYFDYDLFKKHVGLAQRI 345

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                          H  EK ++     R  G+G+      +
Sbjct: 346 MDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRKTLQGRRTGVGITAEGDMI 405

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA + A+   + ++  A  +SV LA+ERGA+  F     ++  F    I 
Sbjct: 406 AALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFEIFDAKREEKNPF----IN 461

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E    L         ++++ K     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 462 RLREADPAL---------YEDMLK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFL 508

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++ + +      V+E    D ++E ++   K+      N            +
Sbjct: 509 PVYKRRRKVNPNDSEARVDFVDETG--DAFEEYIVFHHKFVTWMQANGYSASKKYTQEEV 566

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
           E +        AT+ ++D +  +    R QKW+D + S+ + L ++ S + +D +Y +AW
Sbjct: 567 EELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPNDVSEELVDSLYVEAW 626

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
             G K     R  S + V  +T K
Sbjct: 627 RCGCKGCTVYRDGSRSGVLIATDK 650


>gi|325171198|ref|YP_004251299.1| ribonucleoside triphosphate reductase alpha chain [Vibrio phage
           ICP1]
          Length = 748

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 181/804 (22%), Positives = 327/804 (40%), Gaps = 105/804 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L    S +VL+   K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNLGVGWSSLVLNAI-KKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P          LY +++   +  G+  
Sbjct: 64  AEKADKA--HLAMAARLFLGTMYKNAHGGFEERPH---------LY-DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISLN-CRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQE-VR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYE--RQADRGEI---KVFRKISAVALWRKMLTMLFETGHP 559
               +++  Y       +ENY+  +Q     I   K ++ I AV + +  L    +TG  
Sbjct: 347 LHAPEVYKAY-------HENYDSLKQTLNDYILSGKPYKTIKAVEVLKLYLKQRQDTGRM 399

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------EETAVCNLG 603
           + T+ D  N  +P +    ++SSNLC EI L +                   E A+C L 
Sbjct: 400 YSTWLDEANYHTPFKEP--IYSSNLCVEIFLPTKGFKDTGEMYTNDVENVQGEIALCFLS 457

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            I  +A   + + +Y+ +A      V   DNVI +  +       S    R++G+G+   
Sbjct: 458 CI--VAGRVSEE-EYEDVAYYTLLGV---DNVISLMDYAFPNLSYSAQNRRSVGIGITNL 511

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             AL    + Y + E         E  S++   AS+ LA+E+G       + + +G  PI
Sbjct: 512 AHALASKGLSYKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPI 571

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSI 782
           D+     +  D +   +  R  W+ L+K + + G +RNS   A  P  + + +   + S+
Sbjct: 572 DTYN---KNVDRVHTQKL-RFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSL 627

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  Q+  +K   SG   VV  F   ++                            ++LK
Sbjct: 628 YPIRQDYVIKK--SGTTKVV--FAAPDI----------------------------ENLK 655

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKL-DFIYRQAW 893
             +  A+EI    +I+  +  QK+  Q  S +L+ D         P  + L DF Y  A 
Sbjct: 656 GKYEYAYEIPTKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYY--AT 713

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
            MG+K+ YY  S+S    E ST++
Sbjct: 714 KMGMKSWYYQNSKSGIKQEGSTIE 737


>gi|301308944|ref|ZP_07214889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
 gi|300832970|gb|EFK63595.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
          Length = 846

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 158/684 (23%), Positives = 278/684 (40%), Gaps = 109/684 (15%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y L      I  E P     R+A  +A  E +        E ++L 
Sbjct: 19  FTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLASEIARVEKKYPNPLSEQELFDLF 78

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L K  GG+
Sbjct: 79  DHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G+R GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRR-GALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM     N G               Y +++ I
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKIDDDFMNAAV-NGG--------------TYKQQYPI 238

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
                    D       + I A  LW+K++   +++  P + F D     S P  +  + 
Sbjct: 239 ---------DSDSPVYVKDIDASGLWKKIIHNAWKSAEPGVLFWDTILRESVPDCYADLG 289

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L +INL ++  N       FDYD     +  A R+
Sbjct: 290 FRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFTPDAYFDYDLFKKHVGLAQRI 345

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                          H  EK ++     R  G+G+      +
Sbjct: 346 MDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRKTLQGRRTGVGITAEGDMI 405

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA + A+   + ++  A  +SV LA+ERGA+  F     ++  F    I 
Sbjct: 406 AALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFEIFDAKREEKNPF----IN 461

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            L E    L         ++++ K     G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 462 RLREADPVL---------YEDMLK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFL 508

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------I 834
            +Y  +  ++ + +      V+E    D ++E ++   K+      N            +
Sbjct: 509 PVYKRRRKVNPNDSEARVDFVDETG--DAFEEYIVFHHKFVTWMQANGYSASKKYTQEEV 566

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
           E +        AT+ ++D +  +    R QKW+D + S+ + L ++ S + +D +Y +AW
Sbjct: 567 EELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPNDVSEELVDSLYVEAW 626

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK 917
             G K     R  S + V  +T K
Sbjct: 627 RCGCKGCTVYRDGSRSGVLIATDK 650


>gi|325281019|ref|YP_004253561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
 gi|324312828|gb|ADY33381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
          Length = 846

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 151/617 (24%), Positives = 255/617 (41%), Gaps = 107/617 (17%)

Query: 368 LSSCFL--TTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           LS+CF+     P D YG +    QE   L K  GG+G+D + +R  G+ +  +   S G+
Sbjct: 109 LSNCFVIGNEGPSDSYGGVMKIDQEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGI 168

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PF++  +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  
Sbjct: 169 VPFMERYSNSTREVAQDG-RRGALMLSVSINHPDSESFIDAKMTEG----KVTGANVSVK 223

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FM+ V  +                   +E+E  Y  Y       E K  ++I+A  
Sbjct: 224 IDDEFMRAVIND-------------------EEYEQKYPVYS-----DEPKNRKQINARQ 259

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRS--PQQHVGVVH---SSNLCTEITLNSSSEETAV 599
           LW K++   +++  P I F D   IR   P  +    +   S+N C EI L         
Sbjct: 260 LWNKIVHNAWKSAEPGILFWDTI-IRESVPDCYADKGYRTVSTNPCGEIPLCPYDS---- 314

Query: 600 CNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTI----------- 643
           C L +INL ++  N       FD+      +  A R++D++ID+    I           
Sbjct: 315 CRLLAINLYSYVQNPFTKGAFFDFPLFKKHVAIAQRIMDDIIDLELEKIDAILDKVHEDP 374

Query: 644 -------------EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                        EK K+     R  G+G+      L  L + Y S EA++ A +  + +
Sbjct: 375 ESEEVKGVEIRLWEKIKQKAKEGRRTGVGITAEGDMLAALGLRYGSEEAIDFAVDIQKTL 434

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  A  ASV LA++RG++  +     +   F    I  L E   ++         + E+ 
Sbjct: 435 AVEAYRASVHLAKDRGSFKIYDTRREENNPF----IKRLREADPDM---------YAEMV 481

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE 809
           K     G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E
Sbjct: 482 K----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDQNVHIDFVDE 537

Query: 810 LKQRDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLI 857
               D ++E ++   K+ D    N            I+ +        AT+ +ID +  +
Sbjct: 538 --SGDSYEEFIVFHHKFADWMKANGYDTTKCYTDEEIDELVAQSPYYKATSNDIDWVAKV 595

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRSRSATSVEKS 914
               + QKW+D + S+ + L     ++L   +Y +AW  G K  T Y   SR+   V   
Sbjct: 596 RMQGQVQKWVDHSISVTVNLPSDVTEELVGNLYIEAWKSGCKGCTVYRDGSRAGVLVSNK 655

Query: 915 TLKGVDGKLNAVPVTDP 931
             K      N +P   P
Sbjct: 656 DKKQTTSP-NEMPAKRP 671


>gi|306825285|ref|ZP_07458627.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432721|gb|EFM35695.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 421

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 19/335 (5%)

Query: 288 ERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +++F F+ ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRK-TKIKARDLETEISKLQQESGYPYVVNIDTANRANPVD--GKIIMSNLC 382

Query: 586 TEI-------TLNSSSE-----ETAVCNLGSINLL 608
           +EI        +N + E         CNLGS N++
Sbjct: 383 SEILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVV 417


>gi|162448649|ref|YP_001611016.1| putative ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
 gi|161159231|emb|CAN90536.1| putative Ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
          Length = 1134

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 216/533 (40%), Gaps = 56/533 (10%)

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           PQ S+CF+  V DDL  I+  ++  A L KY  G G +++ +RG    + G  G S G++
Sbjct: 247 PQCSACFIQAVQDDLMSIYDLVKSEARLFKYGSGTGTNFSAIRGKQEKLSG-GGTSSGLM 305

Query: 426 PFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            FL+V +  A A   GG  R+ A    L+  H ++ +F+  +     + ++   +  A +
Sbjct: 306 SFLEVFDRAAGATKSGGTTRRAAKMVCLDMDHPEIVDFIQWKVR---EEKKAMALIGAGY 362

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
             D   +     +G    +   VSD   +       A+E   R       +V   +SA  
Sbjct: 363 PSDFNGEAYHTVSGQNSNNSVRVSDEF-MRAAATGAAWETRSRTTG----EVVDTLSAKD 417

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWR++    +    P + +    N      +   +++SN C+E      S     CNL S
Sbjct: 418 LWRQIAEAAWGCADPGVQYDTTINRWHTCPNTARINASNPCSEYMFLDDS----ACNLAS 473

Query: 605 INLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +NL      +  FD +     +R      + ++D + +      K++H +R +GLG    
Sbjct: 474 LNLTKFLREDGSFDIEGYRHAVRVFFVAQEILVDFSAYPTRGIAKNSHDYRPLGLGYANL 533

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--------- 714
            + L L  IPY S +   +A      +  HA   S E+A  +G ++ F  +         
Sbjct: 534 GTLLMLQGIPYDSDQGRSVAGALTAILCGHAYRVSAEMAAAKGPFAGFARNREPMLRVMG 593

Query: 715 LWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +     + ID        RD    ++ R +   WDE  +  +  G RN+    +APT TI
Sbjct: 594 MHRDAAYAID--------RDRCPESLWRAACADWDEAVRIGQEHGYRNAQATVLAPTGTI 645

Query: 773 ANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             +    +  I+P +  +  K    G +  + +  V E  +R  + EA + ++  +    
Sbjct: 646 GLLMDCDTTGIEPDFSLVKFKKLAGGGYFKIVNQSVPEALRRLGYPEAEVQEIVAYVSGT 705

Query: 832 GNIERIP--------------DDLKKIHAT---AFEID----PMWLIESASRR 863
             +   P              DDL K+ A     F++D    P  L E A  R
Sbjct: 706 NTLLAAPHVNRASLKARGLTSDDLAKVEAAIPGVFDLDLAFGPWILGEEAYDR 758


>gi|255535746|ref|YP_003096117.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341942|gb|ACU08055.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 848

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 156/683 (22%), Positives = 286/683 (41%), Gaps = 119/683 (17%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++   +Y L  +   I    P     R+A  +A  E          E ++L+
Sbjct: 26  FNGDDLAAKVWVSKYALKDSDGNIYERTPDDMHRRIASEIARIEANYPNALSETEVFDLI 85

Query: 347 SSFHFMC---STPTLFNSGTRHPQLSSCFL--TTVPDDLYG-IFGALQENAMLAKYSGGL 400
            +F ++    S  T   +  +   LS+CF+  +    D YG I    QE   L K  GG+
Sbjct: 86  KNFKYIIPQGSPMTGIGNDFQIASLSNCFVIGSGTQSDSYGSIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D +
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSVNHPDSD 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F++ +   G    +    N +  I D FM+ V  N  +T   P     +H         
Sbjct: 205 DFVNAKLEQG----KITGANISVRIDDEFMQAVVGNENYTQKYP-----IH--------- 246

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQHVG 577
                       E   FRK I A  LW K++   +++  P I F D   IR   P  +  
Sbjct: 247 -----------SEDPKFRKEIKATELWDKIIHNAWKSAEPGILFWDTI-IRESLPDCYAD 294

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L ++NL ++  N      +F+++     +  A 
Sbjct: 295 LGYETVSTNPCGEIPLCPYDS----CRLLAVNLFSYVENPFTKKAKFNFELFKKHVGYAQ 350

Query: 630 RVLDNVIDINCHTIE---------------KAKKSNHTH---------RAIGLGLMGFQS 665
           R++D++ID+    I+               KA + N  +         R  G+G+     
Sbjct: 351 RMMDDIIDLEIEKIDAILDKIDSDPESSEIKATEKNLWNNIRKKTIEGRRTGVGITAEGD 410

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L+I Y S E  E +    + ++  A  +SVE+A+ERGA++ +     +   F    
Sbjct: 411 MLAALNIQYGSKEGNEFSTLVHKTLALAAYRSSVEMAKERGAFAIYDAKREENNPF---- 466

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +  ++D             +L + ++  G RN   + IAPT + + +   +  I+P 
Sbjct: 467 ---VQRIKDADP----------QLFEDLQKFGRRNIALLTIAPTGSTSLMSQTTSGIEPV 513

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMI---------------SDLKYHDG 829
           +  +Y  +  ++ +   V    V+E+   D W+E ++               +D KY   
Sbjct: 514 FLPVYKRRRKVNPNDQDVRVDFVDEVG--DHWEEYIVFHHRFKQWMEVNGIDTDRKY--- 568

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFI 888
           S   I +I +      AT+ ++D +  +E     QKW+D + S+ + +   + ++L + +
Sbjct: 569 SQDEINKIIETSPYYKATSNDVDWLSKVEMQGAIQKWVDHSISVTINIPNDATEELVNQL 628

Query: 889 YRQAWLMGLKTTYYLRSRSATSV 911
           Y +AW +G K     R  S + V
Sbjct: 629 YIKAWEVGCKGVTVYRDGSRSGV 651


>gi|86141198|ref|ZP_01059744.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831757|gb|EAQ50212.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
          Length = 852

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 168/716 (23%), Positives = 287/716 (40%), Gaps = 131/716 (18%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETE--KEKRAV 340
           LKY   F  + L  ++  ++Y L  +   I  + P     R+A  +A  E       +  
Sbjct: 23  LKY---FKGDDLAARVWVNKYALKDSDGNIYEKTPDDMHTRIAKEIARIEARYPNPMQED 79

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAML 393
           E ++L+ +F ++    +   +G  +P     LS+CF+       D   GI    QE   L
Sbjct: 80  EVFDLIKNFKYIVPQGSPM-AGIGNPYQVGSLSNCFVIGNDGSSDSYGGIMKIDQEQVQL 138

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   + 
Sbjct: 139 MKRRGGVGHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVS 197

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT----LFSPDEVSD 509
             H D E+F+D +   G    +    N +  I D FM+ V  +  +T    +FSP+ +  
Sbjct: 198 INHPDAEDFIDAKMEQG----KVTGANVSVRIDDGFMQAVKDHKPYTQKYPVFSPNPIKQ 253

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                       ++I A  LW+K++   +++  P I F D    
Sbjct: 254 ----------------------------KEIDAEKLWKKIVHNAWQSAEPGILFWDTIAR 285

Query: 570 RS-PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDK 620
            S P  +  + +   S+N C EI L         C L +INL ++          F+++ 
Sbjct: 286 ESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEKPFTPEASFNFEL 341

Query: 621 LASTIRTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAI 656
               I  A R++D++ID+    ++                          KK     R  
Sbjct: 342 FKKHIAKAQRIMDDIIDLELEKVDAILAKIDADPENDEVKNVERNLWLNIKKKAEEGRRT 401

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+      L  L I Y S    E + E  + I+  A  ASV  A+ERGA+  F     
Sbjct: 402 GIGITAEGDMLAALGIKYGSEAGNEFSVEIHKTIAVEAYRASVYAAKERGAFPIFDSERE 461

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               F I  I            N   +L +D L+      G RN   + IAPT T + + 
Sbjct: 462 KDNPF-IQRI-----------KNADEKLYYDMLE-----YGRRNIALLTIAPTGTTSLMT 504

Query: 777 GVSQSIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD----- 828
             +  I+P +  +Y    K N +     V+   V+E+   D W+E ++   ++ +     
Sbjct: 505 QTTSGIEPVFLPVYKRRRKVNPNDKEARVD--FVDEVG--DSWEEYVVFHHRFKEWMQIN 560

Query: 829 GSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           G   +     ++L  I        AT+ ++D +  +      QKW+D + S+ + L    
Sbjct: 561 GIATDKNYSQEELDVIVAKSPYYQATSNDVDWLNKVRMQGAVQKWVDHSISVTINLPNDV 620

Query: 882 GKKL-DFIYRQAWLMGLK--TTYYLRSRSATSV---EKSTLKGVDGKLNAVPVTDP 931
            ++L   +Y +AW  G K  T Y   SRS   +   EK   +     L A P   P
Sbjct: 621 DEELVGQLYLEAWQAGCKGVTVYRDGSRSGVLISNDEKKNEEEDSETLTAFPTKRP 676


>gi|258591934|emb|CBE68239.1| Ribonucleoside-diphosphate reductase [NC10 bacterium 'Dutch
           sediment']
          Length = 1196

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 135/289 (46%), Gaps = 50/289 (17%)

Query: 600 CNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           CNLGSINL   +            + D+  L   +RTAVR LD+VID+N + ++   +  
Sbjct: 693 CNLGSINLARFYLPSIPADARVTERIDWVGLEQVVRTAVRFLDDVIDVNPYPLQDITEEV 752

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+MG+   L  L +PY S EAV + +E M FI      AS +LA+ RG +  
Sbjct: 753 RNNRRIGLGVMGWADLLLELGVPYDSDEAVTLGNEIMGFIRRIGHDASEKLAEARGPFPR 812

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +  S++ +G  PI                                   RNS    IAPT 
Sbjct: 813 WSRSIY-KGGKPI-----------------------------------RNSTVTTIAPTG 836

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TI+ I G S  I+P +   +  S++ GD   T VN       K+R  + E ++  +    
Sbjct: 837 TISIIVGCSSGIEPIFAVAF--SHIVGDRHLTFVNPIFEEVAKRRGFYSEELMRRVA-ER 893

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           G++  +E +P+D++++  TA EI+P   ++  +  QK  D   S  + L
Sbjct: 894 GTVRGLEGVPEDVQRVFVTAHEIEPARHVKMQAAFQKQTDNGVSKTINL 942



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 44/299 (14%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLA-------LKETEKEKRAVEFYNLLSSFH 350
           +++L +RY +       E P+    RVA+ +A         E E  + A  FY+++    
Sbjct: 38  IRVLKERYLIRDATGVKETPEEMCWRVAVAIAKAEGQWGRSEAEALQVAESFYDVMVDGK 97

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F+ ++PT+ N+G  +  Q S+CF+  V D + GIF A++  A++ +  GG G  ++ +R 
Sbjct: 98  FLPNSPTMMNAGKENGMQYSACFVLPVEDSMEGIFEAVKRAAIIHQSGGGTGFAFSRLRP 157

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
               +  T GK+ G I FL+V N    AV QGG R+GA    L+  H D+ EF+D + + 
Sbjct: 158 KDTLVKSTGGKASGPISFLRVFNAATEAVKQGGARRGANMGILKVDHPDILEFIDCKLDG 217

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G       + N +    D FM  + +         DE  +L D + K             
Sbjct: 218 G-----ITNFNISVATTDTFMDALAK---------DETYELIDPHTK------------- 250

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLC 585
                 V R + A  ++++M+   + TG P + F D  N  SP   +    ++ ++N C
Sbjct: 251 -----LVTRHLPAREVFQRMVQAAWRTGDPGMIFIDRINA-SPSNPIPQDELIEATNPC 303


>gi|29135242|ref|NP_803872.1| ORF306 [Pseudomonas phage phiKZ]
 gi|18996771|gb|AAL83207.1|AF399011_306 PHIKZ306 [Pseudomonas phage phiKZ]
          Length = 779

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 167/666 (25%), Positives = 269/666 (40%), Gaps = 91/666 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           G   E  Q  +MR+AM LA KE  E     VE +Y LLS+      TP   N GT+    
Sbjct: 173 GQEYETAQFVYMRMAMALAEKEPAETRMTHVENYYKLLSNKILSAPTPNYVNLGTKLRGF 232

Query: 369 SSCFLTTVPDDLYGIFGALQE--NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +SC L    D+  G+  A+ +    ++ + S G+G +    R +G  I       QG  P
Sbjct: 233 ASCCLFASGDN--GVSLAMGDYIANIMTQSSAGIGVNLM-TRSIGDPIRNGLIIHQGKKP 289

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++ V    AV  N    R GAV  Y   +  + +    LR     + R+  D++ A    
Sbjct: 290 YIDVIG-KAVRANLQNGRGGAVTCYYSAFDPEADMITQLRNPRSTEDRKNRDLHYAFLSN 348

Query: 487 DLFMKRVTQNAGWT-LFSPDEVSDLHDLYGK----EFEIAYENYERQADRGEIKVFRKIS 541
             F K+  Q  G   +F+P    DLHD +      +F   YE YE  AD    K +  ++
Sbjct: 349 KFFAKKAAQKDGMIFVFNPFTAPDLHDAFYSGDIDKFIKLYEKYE--ADPKFEKTY--VN 404

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------- 592
           A  L + ML   +ETG  +    D  N  +P +    ++SSNLC EI   +         
Sbjct: 405 ARDLLKSMLVEAYETGTIYSAQIDELNHHTPFKE--PIYSSNLCLEIAEPTKPYYRMEDL 462

Query: 593 -SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            SSE+     + + +L A   +N  D          A++++D  I    +       +  
Sbjct: 463 YSSEDHGRGEIATCSLAAIAVDNVPDKQTYEMAAYYALKMIDYCILNAEYAFPHLALTAK 522

Query: 652 THRAIGLGLMGFQSALHLLHIPYAS----PEAVEIADESMEFISFHAISASVELAQERGA 707
              + G+G+MG  + +    + Y+S     E   IA+  M F+    I AS+++++ERG 
Sbjct: 523 NRMSAGVGIMGLATHMARAGLKYSSDAGKAEIHFIAERHMYFL----IKASLKISKERGN 578

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAI 766
                 + W +G  P  +     +   E         PWDEL+K +K   G+ +S   A 
Sbjct: 579 APWIHKTKWPEGWTPRKTYNKSVDTIIEGGFEEL--YPWDELEKEIKENGGIAHSVLAAY 636

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDL 824
            P    +   G +    P                 V   ++N+     R LW      D 
Sbjct: 637 MPGEASSKALGSTNGPYP-----------------VRRLILNKTDNGARVLWAAPYGDDD 679

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
            Y                 ++ +A++I    LI+  +  QKW DQ  S +LY      +K
Sbjct: 680 SY-----------------VYESAYDIPTKDLIDCYAIIQKWTDQTISADLYRRIVGSEK 722

Query: 885 L---DFIYRQAWLM--GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +   + +    +++  G+KT YY+   +A  ++  +L+       AV VT  N+     G
Sbjct: 723 ISSNEMLGNHFYMVKRGMKTRYYVNLETAAGLDIKSLE------RAVEVT--NTEVGCAG 774

Query: 940 IPSSCT 945
              SCT
Sbjct: 775 --GSCT 778


>gi|307822851|ref|ZP_07653082.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
 gi|307736455|gb|EFO07301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
          Length = 716

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 134/567 (23%), Positives = 239/567 (42%), Gaps = 58/567 (10%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I G + E  +  K   G+G +++ +R   A++ G    + G + F+ + +  
Sbjct: 108 TIADSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKNAYVSGAGAYTSGPLSFMDIYDKM 167

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV EF+  ++  G    R    N +  I   F++ V 
Sbjct: 168 CFTVSSAGGRRGAQMATFDVGHPDVVEFIRAKREDG----RLRQFNLSLLITSEFVEAVK 223

Query: 495 QNAGWTLFSP---DEVS-DLHDLYGKEF----EIAYENYERQADRGEI--KVFRKISAVA 544
            +  W+L  P    EV  D  DL   +     ++ Y +     D G +  K+ + + A  
Sbjct: 224 NDKPWSLSFPVTEKEVKLDNLDLTDDKLIIWRDLPYIDGYILNDDGMVACKISKTMPARR 283

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +++  ++   P     D  N  +       + ++N C E  L         C LGS
Sbjct: 284 LWDIIMSSTYDYAEPGFILIDKVNEMNNNWFCEKIRATNPCGEQPLPPYGS----CLLGS 339

Query: 605 INLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           INL       F N+  FD+D     I+   R+LDNV++IN   + + ++   T R  G+G
Sbjct: 340 INLTRFVKKPFTNDAHFDWDNYRKAIKIFTRMLDNVVEINGLPLAQQREEILTKRRHGMG 399

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFK 712
            +G  S + ++ + Y   +++E  +E  + ++     A + LA+E+G        +S   
Sbjct: 400 YLGLGSTVTMMGMKYGDAQSLEFTEEVTKVLAVEGWKAGLALAKEKGPAPIMEQMFSVTG 459

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAI 766
             L  +     D   +   V  +L   + SR          EL   +   G R ++  +I
Sbjct: 460 EMLHKRPEMIADGYKVGDRVPGKLLHTKYSRYMQQVAQEEPELVAELIETGARFTHHSSI 519

Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTV---VNSFLVNELKQRDLWDEA 819
           APT TI    AN    S  I+PS+ + Y ++ +         ++ F    L  R++ +  
Sbjct: 520 APTGTISLSLAN--NASNGIEPSFAHHYSRNVIRAGKKSKEKIDVFSFELLAYREMVNA- 576

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYL 877
               + Y D      +++PD        A ++ P   ++  +  QKWID   +++ N+  
Sbjct: 577 --DAMPYSDDP---EQKLPD----YFIAADDVTPKQHVDIQAAAQKWIDSSISKTANVPT 627

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           D P  +    IY  A+  GLK     R
Sbjct: 628 DYPY-EDFKSIYEYAYDKGLKGCTTFR 653


>gi|307329251|ref|ZP_07608416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
 gi|306885150|gb|EFN16171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
          Length = 953

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 248/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQV-FSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 250 AFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDTFMK 299

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GE     ++ A +L+RKM    +    P I + D  N        
Sbjct: 300 AVESGSSFGLRSRLTGE--PIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTSPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G + +SN C+E + L++SS     CNL S+NL+         N +FD ++ A  +   + 
Sbjct: 358 GRITASNPCSEYMHLDNSS-----CNLASLNLMKFLQDDDAGNQRFDAERFAKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       EK  ++    R +G+G     + L      Y S     +A      +
Sbjct: 413 AMDISICFADFPTEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 472

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDS-IGLLAEVRDEL--AMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   + V    S    +A+  D+L   +   +   W
Sbjct: 473 TGTSYKRSAELAAVVGPYDGYARNADAHKRVMKQHSDANAIAKRMDDLDAPVWAAATEAW 532

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  +    +  ++P    +  K  +  G   +VN+
Sbjct: 533 QDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNN 592

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
            +   LK R  + E  +  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 593 TVPKALK-RLGYQEEQVEAIVAHIADHGNVIDAP-GLKPEHYEVFDCAMGERSISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q ++  A S  + + E +  ++++ IY + W +G+K     R
Sbjct: 651 RMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGIKALAIYR 698


>gi|297202847|ref|ZP_06920244.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
 gi|197717331|gb|EDY61365.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
          Length = 966

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 143/590 (24%), Positives = 243/590 (41%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 134 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 193 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 252 DFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDAFMK 301

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +        GE  V  ++ A AL+RKM    +    P I + D  N        
Sbjct: 302 AVETGGKFGLTSRMTGE--VIEEVEAKALFRKMAEAAWACADPGIQYDDTINHWHTCPES 359

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 360 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVIT 414

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 415 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGSITSLM 474

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRD-ELAMNRTSRL 744
           +  +   S ELA   G Y  +  +   Q    +     D  G    V D +  +   +  
Sbjct: 475 TGTSYRRSAELAAVVGPYDGYARNA--QPHLRVMKQHSDENGKAVRVDDLDTPIWAAATE 532

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RNS    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 533 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 591

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 592 VNGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAP-GLKHEHYEVFDCAMGERSISAMG 650

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 651 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 700


>gi|297156720|gb|ADI06432.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 964

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 140/588 (23%), Positives = 250/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQV-FSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL  + +T    QNA  ++        ++D + K
Sbjct: 250 AFIEAKVKEEEKIRALRD---AGFDMDLGGEDITSVQYQNANNSV-------RVNDTFMK 299

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +   R    GEI    ++ A +L+RKM    +    P I + D  N        
Sbjct: 300 AVESGSKFGLRARMSGEI--LEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTSPET 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
           G + +SN C+E + L++SS     CNL S+NL+    +++     FD ++ A  +   + 
Sbjct: 358 GRITASNPCSEYMHLDNSS-----CNLASLNLMKFLDDDEAGHQRFDAERFAKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 413 AMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 472

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   + V     D+ G    + D +  +   +   W
Sbjct: 473 TGTSYRRSAELAAVVGPYEGYARNADAHKRVMKQHSDANGAAKRMDDLDTPVWAAATEAW 532

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  +    +  I+P    +  K  +  G   +VN+
Sbjct: 533 QDVIRLGEKNGFRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNN 592

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
            +   LK+     E  +  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 593 TVPKALKRLGYQPE-QVEAIVAHIAEHGNVIDAP-GLKSEHYEVFDCAMGDRSISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q ++  A S  + + E +  ++++ IY + W +GLK     R
Sbjct: 651 RMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGLKALAIYR 698


>gi|317124572|ref|YP_004098684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
 gi|315588660|gb|ADU47957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
          Length = 970

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 137/589 (23%), Positives = 250/589 (42%), Gaps = 53/589 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y+LL    F  ++P  FN GT+ PQ +S+CF+  V D +  I    +E   + +   G G
Sbjct: 128 YSLLHQV-FSFNSPVWFNVGTKSPQQVSACFILAVEDSMDSILNWYKEEGKIFQGGSGAG 186

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 187 LNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIE 245

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           EF++ +    D  R   D   A +  DL  + +     QNA  ++               
Sbjct: 246 EFIETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSV-----------RVNA 291

Query: 517 EFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E   +   +  +   V  ++ A  L+ KM    +E   P I + D  N      
Sbjct: 292 EFMRAVEEGTKFGLKARLDGSVIEEVDARELFHKMAQAAWECADPGIQYDDIINDWHTNP 351

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
             G + +SN C+E ++L++SS     CNL S+NLL    ++  FD           +  +
Sbjct: 352 ETGRITASNPCSEYMSLDNSS-----CNLASLNLLKFLRDDDTFDAATFQKVTELVITAM 406

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D  I       EK  ++   +R +G+G     + L      Y S     +A      ++ 
Sbjct: 407 DISISFADFPTEKIAETTRNYRQLGIGYANLGALLMATGHGYDSEGGRALAAAITSLLTG 466

Query: 693 HAISASVELAQERGAYSSF-KGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSR 743
            A   S ELA   G Y+ + + +   + V          + ++G++     +  +++ + 
Sbjct: 467 AAYKRSAELAAVVGPYAGYARNAEAHKRVMRKHQAANDTLKTVGVM-----DADIHQAAT 521

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTV 801
             WD + K  +  G RN+    +APT TI  +    +  I+P +  +  K  +  G   +
Sbjct: 522 KAWDVVVKLGEKNGYRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQI 581

Query: 802 VNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWL 856
           VN  +   LK+     E++ + ++Y  H G + +   +  +  +I  TA     I PM  
Sbjct: 582 VNLTIPRALKKLGYQQESIEAIVEYIAHKGHVIDAPGLKPEHYEIFDTAMGARAIAPMGH 641

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q ++  A S  + L E +  ++++ +Y Q W +GLK     R
Sbjct: 642 VRMMAATQPFLSGAISKTVNLPESATVEEIEDVYFQGWKLGLKALAIYR 690


>gi|153009461|ref|YP_001370676.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561349|gb|ABS14847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1263

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 139/564 (24%), Positives = 235/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +     ++  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  M   +R  WD+  +  +  
Sbjct: 606 AEHMLRVIRNHRLAAHGETEGYEGLAVNPVALIAEDCPDQDMITHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GNI + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNINQAP 748


>gi|9630286|ref|NP_046713.1| ribunucleotide reductase large subunit [Bacillus phage SPBc2]
 gi|50812254|ref|NP_389888.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|75077840|sp|O64173|NRDEB_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
           alpha; AltName: Full=Ribonucleotide reductase large
           subunit; Contains: RecName: Full=SPBc2 bnrdE intein
 gi|81341995|sp|O31875|NRDEB_BACSU RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
           alpha; AltName: Full=Ribonucleotide reductase large
           subunit; Contains: RecName: Full=Bsu nrdEB intein
 gi|3025639|gb|AAC13134.1| ribunucleotide reductase large subunit [Bacillus phage SPbeta]
 gi|32468777|emb|CAB13898.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1084

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 44/396 (11%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           PN+ K+    +++K  +      ++K ++A H         YF  YI +       H+  
Sbjct: 6   PNWIKLNNEIMIQKDGK----YQFEKDKEAVH--------SYFVDYINQN--TVFFHDLK 51

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQI----------------------LYDRYFLHING 311
              D  YL  +  YE +F  +Y   QI                       Y+ Y L  N 
Sbjct: 52  EKLD--YLIKNDYYEEEFLSKYTFEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTN- 108

Query: 312 SRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369
            + ++ + +  RV++  L   + + EK   E + ++    +  +TPT  N+G  R  ++ 
Sbjct: 109 DKTKILERYEDRVSIVALYCADGDYEKAVEEVHTMMKQ-EYQPATPTFLNAGRKRRGEMV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K
Sbjct: 168 SCFLLEVGDSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F
Sbjct: 228 LLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKF 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           ++   ++  + +F P  V   +  Y  E +I  E Y+   +   ++   K +A  L  ++
Sbjct: 288 IELAREDKDYYMFYPHSVYKEYGQYLDELDIN-EMYDELVENPRVRK-AKGNARKLLEQL 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +  E+G+P+I F D  N   P +H+  V  SNLC
Sbjct: 346 AILRSESGYPYIMFADNVNKVHPNEHISKVKFSNLC 381



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 61/327 (18%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
            CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 793  CNLGSMNIVNVMSNQS-----IASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 847

Query: 659  GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
            G M     L   +I Y S EA + A+     ++F+++  S+E+A+E G  Y  F GS + 
Sbjct: 848  GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 907

Query: 718  QGVF-----PIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTAT 771
             G +       D      +V+          +  W +LK+ V   G+ +S   AIAPT +
Sbjct: 908  SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVMKYGLYHSYRQAIAPTGS 967

Query: 772  IANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            I+ +   +  + P        +Y N      M G  +  N F   E              
Sbjct: 968  ISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------- 1012

Query: 824  LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                    A+++D   +++  +  Q+ +DQ  S  L+L D  + 
Sbjct: 1013 ------------------------AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTT 1048

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            + L+ I   A   G+KT YY R++  T
Sbjct: 1049 RDLNRIDLYAHHRGIKTLYYARTKDTT 1075


>gi|332977689|gb|EGK14454.1| ribonucleoside-diphosphate reductase [Desmospora sp. 8437]
          Length = 1120

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 216/515 (41%), Gaps = 76/515 (14%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G  G S 
Sbjct: 192 PQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNIRGKGEPLSG-GGTSS 250

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++ FLK+ +  A A+  GG  R+ A    L+  H DVEEF++ + N   + ++   +  
Sbjct: 251 GLLSFLKIGDRAAGAIKSGGTTRRAAKMVTLDLDHPDVEEFINWKSN---EEKKVRALIE 307

Query: 482 ANWIPDL----FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           A + P      +     QN+  ++  P+E   + D      E    N  R+ D    KV 
Sbjct: 308 AGYDPSFNGEAYETISGQNSNNSVRVPNEFFRVLD------EDGGWNLIRRTDG---KVS 358

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVGV-------VHSSNLCTEI 588
           + + A  LW+++    +E   P + +    N    +P    G        +++SN C+E 
Sbjct: 359 KTVPARDLWKQISEAAWECADPGLQYDGTINEWHTTPAGMDGQLGARHNRINASNPCSEY 418

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               ++     CNL S+NL+  +   N +FD   L    R    VL+  + +  +   + 
Sbjct: 419 MFLDNT----ACNLASLNLMKFYDVENTRFDIPALKHASRLWTVVLEISVLMAQYPSREI 474

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG     + L +  IPY S EA+ I       ++  A + S E+A+E G
Sbjct: 475 ARLSYEYRTLGLGYANIGTVLMVSGIPYDSDEALAITGAVTAIMTGTAYATSAEMARELG 534

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMN------------------------- 739
            + +          FP++   +L  +R+    A N                         
Sbjct: 535 PFKA----------FPLNREHMLRVIRNHRRAAYNVADEEYEGLTVPPMGIHPTHCPPEL 584

Query: 740 -RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +RL WDE  +  +  G RN+    +APT TI  +    +  ++P +  +  K    G
Sbjct: 585 LEAARLCWDEALELGEKHGYRNAQSTLLAPTGTIGLLMDCDTTGVEPDFALVKFKKLAGG 644

Query: 798 D-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             F + N  +   LK     +  +   L Y  G++
Sbjct: 645 GYFKIANQSIQPALKNLGYSEAEIREILTYVTGTL 679


>gi|300710136|ref|YP_003735950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
 gi|299123819|gb|ADJ14158.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
          Length = 1031

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 185/466 (39%), Gaps = 103/466 (22%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E +A EF  L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EAKADEFQALMERLSFIPNSPTLMNAGDELQQLSACFVDSPGDDISDIHQTAKEAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWRLRPYGDSVGSTGGIASGPITFMRTFDQMCETIAQGGTRRGAQMGVMRVS 261

Query: 456 HIDVEEFL-----------DLRKNTGDDRRRT---------------------------- 476
           H DV EF+            LR N  DD   T                            
Sbjct: 262 HPDVIEFIHAKNKDVSLAHTLRLNDPDDYTYTSFSEALEEARGLIDEDGRVPKHLRNAVE 321

Query: 477 ---HDMNTANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKEFEIAYEN 524
               + N +  + D FM+ +  +  +   +P          E  +++  YG    +    
Sbjct: 322 GHLSNFNISVGVTDGFMEALYNDEEFVFENPRTEEPHIATAETKEMYSRYGLGHHV---- 377

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN------IRSPQQHVGV 578
                   E+     I A ALW +++   +E G P + + +  N      + +   H   
Sbjct: 378 --------EVGEELAIPAEALWDRIVDGAYENGEPGVIYLERVNKEHSFDVEAHPDH--R 427

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY-------------------D 619
           + ++N C E  L    EE   CNLG INL    A +  D+                   D
Sbjct: 428 ILATNPCGEQPL----EEYEACNLGHINLSTLAATDAPDWRIWHTEHGAEYDSLEAAMAD 483

Query: 620 KLASTIRTA---------VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            L   I TA          R L+NV+ ++   + + ++     R IGLG+MG       L
Sbjct: 484 YLEEAIDTAEFDRRIELGTRFLENVVTMSDFPVPEIEQKVREMRKIGLGIMGLAQLYIQL 543

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            + Y S E  E+A + M  I+  +  AS ELA ERG++  +  S +
Sbjct: 544 GVRYGSEEGNEMASQLMTHINHGSKRASHELAGERGSFEDWSDSKY 589


>gi|239831934|ref|ZP_04680263.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
 gi|239824201|gb|EEQ95769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
          Length = 1265

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 138/567 (24%), Positives = 233/567 (41%), Gaps = 95/567 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 467 -------------------------KNTGDD---------RRRTHDMNTANWIPDLFMKR 492
                                    + T DD          +R       N +P+ ++KR
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEAGSEATRDDCFDPAKNPALKREIRAAKKNQVPENYVKR 370

Query: 493 VTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADR 531
           V Q A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R
Sbjct: 371 VIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR 430

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            + +V + + A  LW K+    + +  P + +    N        G + +SN C+E    
Sbjct: 431 -DGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF- 488

Query: 592 SSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              ++TA CNL SINLL +   +  FD      T R    VL+  + +     ++  + +
Sbjct: 489 --LDDTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLS 545

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG       L    IPY S E   I       ++  A + S E+A+E G + S
Sbjct: 546 YEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPS 605

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         ++ + L+AE   +  M   +R  WD+  + 
Sbjct: 606 YEPNAQHMLRVIRNHRRAAHGETQGYEGLAVNPVALIAEDCPDQDMIVHARAAWDKALEL 665

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  
Sbjct: 666 GEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEAL 725

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIP 838
           +   + E+ I++++ +    GNI + P
Sbjct: 726 RTLGYSESQIAEIEAYAVGHGNINQAP 752


>gi|269102468|ref|ZP_06155165.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162366|gb|EEZ40862.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 716

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 155/673 (23%), Positives = 270/673 (40%), Gaps = 74/673 (10%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP-QAFFMRVAMGLALKETEKEKR 338
           LA D   ++   F+   ++I   +Y L    G  I++     F RVA  L+  E  K ++
Sbjct: 6   LAADTTAKQTIPFQPTSIEIWNSKYRLKSKYGDAIDLTLDDTFKRVAKALSALEKPKLQQ 65

Query: 339 --AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP----DDLYGIFGALQENAM 392
               EF   L +        T       H   +S    TV     D +  I   + E  +
Sbjct: 66  HWYQEFLWALRNGAIPAGRITSNAGAFEHKPATSTINCTVSGIIEDSMDDILAKVHEAGL 125

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
             K   G+G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    +
Sbjct: 126 TLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTM 185

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------- 504
           +  H D+ EF+  ++  G    R    N +  I + F++ V Q+  W L  P        
Sbjct: 186 DVRHPDIIEFIRAKREDG----RLRQFNLSLLITEEFIEAVKQDLSWQLIFPMTAKEIAQ 241

Query: 505 --DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              +V +   +   ++    +  E    +   K++R + A  LW  ++T  ++   P   
Sbjct: 242 DGIDVDNDETMVWADWPTTTDLIENDLGQVACKIYRTLPARNLWNIIMTSTYDYAEPGFI 301

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFD 617
             D  N  +       + ++N C E  L         C LGS+NL            +FD
Sbjct: 302 LIDKVNQMNNNWFCEDIRATNPCGEQPL----PPYGACLLGSVNLTKFVRYPFTEQAEFD 357

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +    +    R+LDNV++IN   +EK +      R  G+G +G  S L +L   Y S 
Sbjct: 358 WKEFRKVVAIFTRMLDNVVEINHLPLEKQRHEIENKRRHGMGFLGLGSTLTMLRHQYGSA 417

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSF-------------KGSLWDQGVFPID 724
            +V   ++    ++      ++ELA+E+G+                 +  + D G    D
Sbjct: 418 ASVAFTEQVALELAVVGWQQALELAKEKGSAPIMEQEFEVTAKMLRQRPEMHDDGYELGD 477

Query: 725 SI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVS 779
            + G +   +    M + + +   EL  ++   G R ++  +IAPT TI    AN    S
Sbjct: 478 KVKGRILHAKYSRYMQQLAEVE-PELVTQLMETGARFTHHSSIAPTGTISLSLAN--NAS 534

Query: 780 QSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELKQRDLW-DEAMISDLKYHDGSIGNIE 835
             I+PS+ + Y ++ + +G  T   V+ +    L  R+L  D+AM    +          
Sbjct: 535 NGIEPSFAHHYTRNVIVAGKKTKESVDVYSYELLAYRELINDKAMPYSTE---------- 584

Query: 836 RIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQ 891
             PD  L     TA +I P   +E  +  Q+WID   S++   + P+    +    IY  
Sbjct: 585 --PDAMLPDYFITADDITPSQHVEVQAAAQRWID--SSISKTANVPTNFAFESFKDIYMD 640

Query: 892 AWLMGLKTTYYLR 904
           A+  GLK     R
Sbjct: 641 AYDKGLKGCTTFR 653


>gi|227498920|ref|ZP_03929059.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904371|gb|EEH90289.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 757

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 205/469 (43%), Gaps = 67/469 (14%)

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LS+C++   P+D +  IF    + A    Y GG G D + +   GAHI+    ++ G I 
Sbjct: 73  LSNCYVVEPPEDSIESIFDRAGKLARTYSYGGGCGIDISKLSPKGAHINNAAKQTSGSIS 132

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+ + +     + Q G+R GA+   ++  H DV +F+ L+     D  +    N +  I 
Sbjct: 133 FMTLYSLVTELIGQNGRR-GALMISIDCSHPDVVDFIKLKT----DLDKVTKANISVRIS 187

Query: 487 DLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
             FM+ V +N  + L ++  E  +  +      E+ +   E   D  E            
Sbjct: 188 GDFMEAVKENRKFRLHYTRKETGETIESLVDAAEVFHLLAETNWDYAE-------PGALF 240

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W ++ +        W       N +S  Q  GV    N C E  L +       C LGS+
Sbjct: 241 WDRITS--------WNLLS---NTKS-FQFAGV----NPCAEEPLPAGGS----CLLGSM 280

Query: 606 NLLAHFANN------QFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657
           NL A F  +       FD +     I  AVR L++V++  +  H +E+ ++S    R IG
Sbjct: 281 NL-AEFVKDPFTEEASFDQEGFKQAIHVAVRALNDVLEEGLPLHPLEEQRESVAKWRQIG 339

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  + + Y S EAV+        ++  AI++S  LA+ERG+Y  F      
Sbjct: 340 LGIMGLGDMLLKMGLTYGSKEAVDFCHTLGFTMADTAIASSALLAKERGSYEQF------ 393

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                       AE   E    + +    +E  + VK+ G+RNS  + IAPT T++ + G
Sbjct: 394 -----------CAEEVMETPYFKANTT--EETVQLVKSYGLRNSQLLTIAPTGTLSTMLG 440

Query: 778 VSQSIDPSYQNLYVKSNMS---GD--FTVVNSFLVNELKQRDLWDEAMI 821
           +S  I+P Y N Y +   S    D  + V    +   +KQ DL D++ +
Sbjct: 441 ISGGIEPIYANYYERKTESLHAADVYYKVYTPIVERYMKQHDLKDDSQL 489


>gi|218289143|ref|ZP_03493379.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240726|gb|EED07905.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 42/253 (16%)

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           + LG+ G+   L    IP+ S   V+ ADE  E+I+F AI AS+ELA E+G Y  F+GS 
Sbjct: 1   MALGISGYHQYLAYKGIPWKSETHVKHADELFEWINFFAIEASMELACEKGPYPLFEGSD 60

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D  G            R     WD L++ V   G+RN+  +AIAPT++ + I
Sbjct: 61  WQTGRY-FDLRGY---------RTRPGGPDWDRLRREVAEHGVRNAYLVAIAPTSSTSLI 110

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  IDP Y   +++   +G   VV     N L  +  W                   
Sbjct: 111 AGSTAGIDPVYARFFLEEKKNG---VVPQTAPN-LNDKTFW------------------- 147

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                    +  A  ID  W IE+ + RQ+ +DQ+QS NLY+    S ++   +Y  AW 
Sbjct: 148 --------YYKEAHTIDQRWSIEACAARQRHVDQSQSFNLYITPGISARQFLDLYMLAWK 199

Query: 895 MGLKTTYYLRSRS 907
            GLKT YY+RS+S
Sbjct: 200 RGLKTVYYVRSKS 212


>gi|149375056|ref|ZP_01892829.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360945|gb|EDM49396.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 699

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 132/567 (23%), Positives = 237/567 (41%), Gaps = 58/567 (10%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +V D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 91  SVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDIFDRM 150

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I + F++ V 
Sbjct: 151 CFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKREDG----RLRQFNLSLLITEDFIEAVR 206

Query: 495 QNAGWTLFSP-------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
               W L  P       DE  DL D      ++F I          +   +++R + A  
Sbjct: 207 NGDDWHLSFPVTEKEVEDEGLDLSDTTQFVYRDFPIQKGYVVNGEGKVACRIYRTLKAQF 266

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  ++T  ++   P     D  N  +       + ++N C E  L         C LGS
Sbjct: 267 IWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPYGS----CLLGS 322

Query: 605 INLLAH----FANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL       F +   F+Y+K    +    R+LDNV++IN   +E+ +      R  G+G
Sbjct: 323 VNLTMFVDYPFTDKASFNYEKYRKVVGIFTRMLDNVVEINGLPLEEQRHEITYKRRHGMG 382

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFK 712
           ++G  S L +L +PY S E+V+  +E +  ++      S+ LA+E+G        +    
Sbjct: 383 ILGLGSTLAMLRMPYGSSESVQFTEEVVREMAVEGWRQSLALAEEKGPAPIMDDEFEVTP 442

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAI 766
             L        D   L  +++ ++   + S+          EL +++   G R ++  +I
Sbjct: 443 KMLTKCPQLSQDGYKLGDKLKGKVLHAKYSKYMQQIAGVEPELIEQLAEKGGRFTHHTSI 502

Query: 767 APTATI----ANICGVSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELKQRDLWDEA 819
           APT TI    AN    S  I+PS+ + Y ++ +  G  T   V+ F    L  R L +  
Sbjct: 503 APTGTISLSLAN--NASNGIEPSFSHHYARNIIREGRKTKEKVDVFSFELLAYRHLVNPG 560

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
            +   +  D      +R+P    +   T+ ++ P   ++  +  Q W+D + S    + +
Sbjct: 561 AMPFSEEED------KRLP----QYFTTSEDVTPAQHVDIQAAAQLWVDSSISKTANVPQ 610

Query: 880 PSGKKLDF--IYRQAWLMGLKTTYYLR 904
                 DF  IY  A+  GLK     R
Sbjct: 611 DFAYP-DFKDIYMYAYDKGLKGCTTFR 636


>gi|83816554|ref|YP_444285.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
 gi|83757948|gb|ABC46061.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
          Length = 932

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 152/323 (47%), Gaps = 49/323 (15%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHT 642
           C+EI L S  +E+ VC L S+N L H+ ++  D D + +  +    V+   ID       
Sbjct: 632 CSEIALPSGPDESFVCCLSSMNAL-HY-DDWKDTDAVETLTQFLDAVMQEFIDGAKGMAH 689

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++A +    HRAIG+G++G+ S L    IP+ S EA     E  + I   + +AS ELA
Sbjct: 690 MDRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAASAELA 749

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
              G     +G                                           G RN+ 
Sbjct: 750 DRFGEPPVLEG------------------------------------------YGRRNAT 767

Query: 763 CMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            MA+APT + + I G VS SI+P   N +V+       T  N  L   L+++    +A+ 
Sbjct: 768 TMAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLQALLQEKGRDTDAVW 827

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
            ++   DGS+ +++ + D+ K +  T  EI  M +I+ A+ RQK IDQ+QSLNL +D  S
Sbjct: 828 DEIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAIDPGS 887

Query: 882 G--KKLDFIYRQAWLMGLKTTYY 902
              K ++ +Y +AW  G+K+ YY
Sbjct: 888 TPVKDINRLYVEAWKKGVKSLYY 910



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 93/250 (37%), Gaps = 50/250 (20%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  FY  ++  ++  ++P   N G       SCF + + D +  I     E  M+ K  G
Sbjct: 58  ADRFYEYMARGYYSLASPVWANFGLDRGLPISCFGSYIDDSMEAILNTHAEVGMMTKVGG 117

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  VR  GA I   NG S G  PF ++ +     V+QG  R+G    Y++  H D
Sbjct: 118 GTSGYFGDVRPRGASIT-NNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPD 176

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           VEE+L+++  T  D  +T             M  V     W     D  SD         
Sbjct: 177 VEEWLNIQ--TEGDAIQT------------MMYGVVVGDDWMEAMIDGDSDKR------- 215

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                                    ALW K++      G P+I F+       PQ +   
Sbjct: 216 -------------------------ALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDK 250

Query: 579 ---VHSSNLC 585
              VH+SNLC
Sbjct: 251 GYDVHASNLC 260


>gi|311742740|ref|ZP_07716549.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
 gi|311314368|gb|EFQ84276.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
          Length = 970

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 141/600 (23%), Positives = 246/600 (41%), Gaps = 41/600 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    E + E    E  ++L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 113 GYFTTEADAEVFEHELTHMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILN 172

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  GG  R
Sbjct: 173 WYREEGLIFKGGSGAGLNLSRIRSSKELLRSSGGTASGPVSFMRGADASAGTIKSGGATR 232

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+ EF+  +    D  R   D   A +  DL    +T    QNA  +
Sbjct: 233 RAAKMVVLDVDHPDIAEFVATKAREEDKIRVLRD---AGYDMDLGGADITSVQYQNANNS 289

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGH 558
           +     V+D       EF  A E+      RG +  +V   + A +LW  +    +    
Sbjct: 290 I----RVND-------EFMRAVEDGTEFGLRGRMTGEVIETVDARSLWNDIAEAAWACAD 338

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QF 616
           P I +    N        G + +SN C+E + L++SS     CNL S+NLL    ++  F
Sbjct: 339 PGIQYDGTINDWHTSPEAGRITASNPCSEYMHLDNSS-----CNLASLNLLKFLKDDGSF 393

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +     +   +  +D  I       E    +   +R +G+G     + L    + Y S
Sbjct: 394 DTETFVKAVEFIITAMDISICFADFPTEAIGDTTRAYRQLGIGFANLGALLMASGLAYDS 453

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
                +A      ++  +   S ELA   G Y  F  +                E+R   
Sbjct: 454 DGGRALAGAITSLMTGTSFRRSAELAGVVGPYDGFAQNASAHERVMRKHQAANDEIRTLH 513

Query: 735 --ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYV 791
             ++A++R +   W +  K  +  G RNS    +APT TI  +    +  I+P +  +  
Sbjct: 514 SMDIAVHREAAKQWADNLKIGEKNGWRNSQASVLAPTGTIGFMMDCDTTGIEPDFSLVKF 573

Query: 792 KSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA 848
           K  +  G   +VN  +   LK+     E + + ++Y   +G + +   +  +  ++  TA
Sbjct: 574 KKLVGGGSMQIVNQTIPAALKKLGYAGETIEAIVEYIAENGHVVDAPGLKTEHYEVFDTA 633

Query: 849 F---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
                I PM  +   +  Q ++  A S  + L E  S +++  +Y Q W +GLK     R
Sbjct: 634 MGQRSIKPMGHVHMMAACQPFLSGAISKTVNLPESASVEEIKDVYFQGWKLGLKALAVYR 693


>gi|328885529|emb|CCA58768.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Streptomyces venezuelae ATCC 10712]
          Length = 941

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 143/588 (24%), Positives = 244/588 (41%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 110 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 168

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 169 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 227

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F+  +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 228 DFIQTKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDTFMK 277

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E            GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 278 AVESGGTFGLTSRMTGE--VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPES 335

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 336 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVIT 390

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++   +R +G+G     + L      Y S     +A      +
Sbjct: 391 AMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 450

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPW 746
           +  +   S ELA   GAY  + + +   Q V    +      VR D+L   +   +   W
Sbjct: 451 TGTSYKRSAELAAVVGAYDGYARNAAPHQRVMQQHADENTKAVRMDDLDSPIWAAATEAW 510

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 511 QDVIRLGAKHGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 569

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I  M  +
Sbjct: 570 GTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAP-GLKTEHYEVFDCAMGERSISAMGHV 628

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 629 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 676


>gi|302542052|ref|ZP_07294394.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459670|gb|EFL22763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces himastatinicus ATCC 53653]
          Length = 954

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 139/588 (23%), Positives = 246/588 (41%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 131 YALLHQV-FSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 189

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 190 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 248

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 249 AFIETKVKEEEKVRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDTFMK 298

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +   R    GE     +I A +L+RKM    +    P I + D  N        
Sbjct: 299 AVESGSQFGLRSRMTGE--PIEEIDAKSLFRKMAEAAWACADPGIQYDDTINHWHTSPET 356

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G + +SN C+E + L++SS     CNL S+NL+         N +FD ++ A  +   + 
Sbjct: 357 GRITASNPCSEYMHLDNSS-----CNLASLNLMKFLEDDDAGNQRFDAERFAKVVELVIT 411

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 412 AMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 471

Query: 691 SFHAISASVELAQERGAYSSF--KGSLWDQGVFPIDSIGLLAEVRDEL--AMNRTSRLPW 746
           +  +   S ELA   G Y  +       ++ +        +A+  D+L   +   +   W
Sbjct: 472 TGTSYKRSAELAGVVGPYDGYARNADAHNRVMKQHSDANAIAKRVDDLDSPVWAAATEAW 531

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  +    +  ++P    +  K  +  G   +VN+
Sbjct: 532 QDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNN 591

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
            +   LK+     E  +  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 592 TVPKALKRLGYQPE-QVEAIVAHIAEHGNVIDAP-GLKLEHYEVFDCAMGERSISPMGHV 649

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q ++  A S  + + E +  ++++ IY + W +GLK     R
Sbjct: 650 RMMAAAQPFLSGAISKTVNMSESATVEEIEEIYFEGWKLGLKALAIYR 697


>gi|116620784|ref|YP_822940.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223946|gb|ABJ82655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 944

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 138/586 (23%), Positives = 238/586 (40%), Gaps = 66/586 (11%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           T   +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +R   A + G
Sbjct: 175 TKLETGVMRPQCSACFIVSVKDSLESILDLAKTEGMLFKWGSGTGSNLSALREEDAVLSG 234

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             G++ G + F+K  +  A  +  GGK R+ A    L   H DV++F+  +     + ++
Sbjct: 235 -GGRASGPLSFMKGFDAFAGVIKSGGKTRRAAKMVILNVDHPDVDKFIWCKAK---EEKK 290

Query: 476 THDMNTANWIPDL----FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
            + +  A +   L    +     QNA  ++ + DE  D                 R  D 
Sbjct: 291 AYTLVEAGYDSSLDGEAYSSIFFQNANNSVRASDEFMDAA--------------MRDDDW 336

Query: 532 GEIKVF-----RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               VF     ++  A  L R++     + G P + F    N   P ++   +++SN C+
Sbjct: 337 WTKGVFTGQPVKRYKAKDLMRQIAEATHQCGDPGMQFDTTVNRWHPCKNTARINASNPCS 396

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E      S     CNL S+NL+ +   + QFD +     + T +   + ++D   +  EK
Sbjct: 397 EYMFLDDS----ACNLSSLNLMKYVGPDGQFDVEAFRHAVDTMILAQEIIVDNASYPTEK 452

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +++H  R +GLG     + L  + +PY S    + A      +   A   S  +A+  
Sbjct: 453 IGQNSHDFRPLGLGFANLGALLMSMGVPYDSDHGRDFAGAITAVMCGQAYLTSSRVAE-- 510

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP----------WDELKKRVKT 755
            A   F+G   ++  F    + ++   RD +     + LP          WD   +  + 
Sbjct: 511 -AVGPFEGYAANEDPF----LEVIRMHRDSVKRINGNHLPTALMSGAQECWDYAYESGRR 565

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P    + Y K    G   +VN+ +   L + 
Sbjct: 566 SGYRNAQVTVIAPTGTIGFMMDCDTTGIEPDLALIKYKKLVGGGVIKIVNNTVPAALVKL 625

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMWLIESASR 862
               E     +  H  S G IE  P DLK  H   F+           I  M  +   + 
Sbjct: 626 GYTPE-QAEKIVTHIDSTGTIEGAP-DLKPEHLAVFDCSFRPQNGSRSIHYMGHVRMMAA 683

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            Q +I  A S  + + +E + +++   Y ++W +GLK     R  S
Sbjct: 684 VQPFISGAISKTINMPEECTVEEIMSAYTESWKLGLKAVAIYRDNS 729


>gi|84495900|ref|ZP_00994754.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
 gi|84382668|gb|EAP98549.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
          Length = 987

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 143/586 (24%), Positives = 243/586 (41%), Gaps = 47/586 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E   + K   G G
Sbjct: 128 YALLHQV-FSFNSPVWFNVGTASPQQVSACFILAVDDSMDSILNWYKEEGFIFKGGSGAG 186

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ 
Sbjct: 187 LNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIV 245

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           EF++ +    D  R   D   A +  DL  K +     QNA  ++   DE     +  G 
Sbjct: 246 EFVETKAREEDKIRALRD---AGFDMDLGGKDIVSVQYQNANNSVRVNDEFMRAVE-EGT 301

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EF +          RG+  V   I A  L  K+    +E   P I + D  N        
Sbjct: 302 EFGLK--------SRGDGSVIETIDARELMGKIAKAAWECADPGIQYDDTINDWHTNPET 353

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDN 634
           G + +SN C+E ++L++SS     CNL S+NLL    ++  FD  K        +  +D 
Sbjct: 354 GRITASNPCSEYMSLDNSS-----CNLASLNLLKFLKDDDTFDVVKFQQVAELVITAMDI 408

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I       E   K+   +R +G+G     + L      Y S     +A      ++  A
Sbjct: 409 SICFADFPTEPIAKTTRDYRQLGIGYANLGALLMATGHGYDSDGGRALAASITSLLTGAA 468

Query: 695 ISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
              S E+A   G Y+ +  +      +  +     DSI  +  +  ++  +R +   WD 
Sbjct: 469 YKRSAEIAGVVGPYAGYARNADAHKRVMRKHASANDSIRTMQTMDKDI--HRAATKAWDA 526

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
           + K  +  G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN  +
Sbjct: 527 VVKVGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNLTI 586

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L++    +E + + +++     G++   P  LK  H   F+       I  M  +  
Sbjct: 587 PRALRKLGYTEETVEAIVEFI-ADKGHVIDAP-GLKTEHYEIFDTAMGARSISAMGHVRM 644

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +  Q ++  A S  + L E  S +++  +Y Q W MGLK     R
Sbjct: 645 MAATQPFLSGAISKTVNLPEDASVEEIQDVYMQGWKMGLKALAVYR 690


>gi|256255021|ref|ZP_05460557.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|261222211|ref|ZP_05936492.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265998175|ref|ZP_06110732.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260920795|gb|EEX87448.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262552643|gb|EEZ08633.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1261

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|256159759|ref|ZP_05457506.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|256044701|ref|ZP_05447605.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNLNQAP 748


>gi|254689271|ref|ZP_05152525.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254697407|ref|ZP_05159235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|256257521|ref|ZP_05463057.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
          Length = 1257

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|62289965|ref|YP_221758.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|82699892|ref|YP_414466.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|189024207|ref|YP_001934975.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237815468|ref|ZP_04594466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|254730305|ref|ZP_05188883.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260545287|ref|ZP_05821028.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260754779|ref|ZP_05867127.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260758002|ref|ZP_05870350.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260761825|ref|ZP_05874168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883797|ref|ZP_05895411.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297248364|ref|ZP_06932082.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
 gi|62196097|gb|AAX74397.1| ribonucleotide reductase domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615993|emb|CAJ11019.1| Ribonucleotide reductase large subunit [Brucella melitensis biovar
           Abortus 2308]
 gi|189019779|gb|ACD72501.1| Ribonucleotide reductase large subunit [Brucella abortus S19]
 gi|237790305|gb|EEP64515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|260096694|gb|EEW80569.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260668320|gb|EEX55260.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260672257|gb|EEX59078.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674887|gb|EEX61708.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260873325|gb|EEX80394.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297175533|gb|EFH34880.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
          Length = 1260

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNLNQAP 748


>gi|265994961|ref|ZP_06107518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|265999463|ref|ZP_05466495.2| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|262766074|gb|EEZ11863.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263094108|gb|EEZ18030.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409064|gb|ADZ66129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326538771|gb|ADZ86986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis M5-90]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 723 -YSESQIAEIEAYAVGHGNLNQAP 745


>gi|306843914|ref|ZP_07476509.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
 gi|306275669|gb|EFM57393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
          Length = 1260

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|225852546|ref|YP_002732779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256113594|ref|ZP_05454414.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|225640911|gb|ACO00825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis ATCC 23457]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNLNQAP 748


>gi|223983087|ref|ZP_03633285.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
 gi|223964943|gb|EEF69257.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
          Length = 469

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 171/385 (44%), Gaps = 56/385 (14%)

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNS 592
           IK +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  L  
Sbjct: 48  IKTYRTIRARDLWDLICFCATYSAEPGIFFIDNANKMTNAKAYGQKVVATNPCGEQPLAP 107

Query: 593 SSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            S    VCNL ++NL A+F +    +  +D+LA T+   VR+ DNVI+   + ++  +  
Sbjct: 108 YS----VCNLAAVNL-ANFVDKKDGRILFDELAETVALTVRMQDNVINSTPYFLKANEDQ 162

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y SPEA+E  D+    I+  A   SVELA+E+G++ 
Sbjct: 163 ALGERRVGLGVMGLHDMLIWNRKRYGSPEALETIDQVFHCIARAAYQTSVELAKEKGSFP 222

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAP 768
            F                       E  +N       DE +++ V   G+RNS+ + IAP
Sbjct: 223 FFTSG--------------------EAFINTGYMKQMDEDIRQDVLKYGIRNSHLLTIAP 262

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  VN+ +V      D W       L  + 
Sbjct: 263 TGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVNAAIV------DQW-------LALNP 309

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKL 885
           G         D L +   +A E+ P    ++    Q+WID   S++  ++ P G   +++
Sbjct: 310 GY------TRDTLPEFFVSAMELTPEEHADTQCAIQRWID--SSISKTVNAPRGFSVRQV 361

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSA 908
             IY + +  G K  T Y   SR +
Sbjct: 362 QHIYERLYAGGAKGGTVYVDGSRDS 386


>gi|49477195|ref|YP_035576.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318722|ref|ZP_00391681.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|165870442|ref|ZP_02215097.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167634290|ref|ZP_02392611.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|167639300|ref|ZP_02397572.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|170686704|ref|ZP_02877924.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|170706204|ref|ZP_02896665.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|177651433|ref|ZP_02934222.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190568016|ref|ZP_03020926.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|196035391|ref|ZP_03102796.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218902560|ref|YP_002450394.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227815799|ref|YP_002815808.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228926483|ref|ZP_04089555.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932734|ref|ZP_04095606.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120992|ref|ZP_04250234.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229604865|ref|YP_002865866.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
 gi|254682484|ref|ZP_05146345.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726147|ref|ZP_05187929.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733900|ref|ZP_05191614.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740410|ref|ZP_05198101.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753801|ref|ZP_05205836.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758896|ref|ZP_05210923.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49328751|gb|AAT59397.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164713937|gb|EDR19459.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167512739|gb|EDR88113.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|167530178|gb|EDR92904.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|170128738|gb|EDS97604.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|170669227|gb|EDT19970.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|172082711|gb|EDT67774.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190560750|gb|EDV14725.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|195992068|gb|EDX56031.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218536400|gb|ACK88798.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227004906|gb|ACP14649.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228662652|gb|EEL18250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826939|gb|EEM72701.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833307|gb|EEM78872.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229269273|gb|ACQ50910.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
          Length = 440

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 210/464 (45%), Gaps = 61/464 (13%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I  E Y
Sbjct: 3   KKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID-EMY 61

Query: 526 ERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G V  S
Sbjct: 62  DELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMS 119

Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLCTEI  L  +SE               CNLGS+N++    N +   + + + +     
Sbjct: 120 NLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGMEALTA 178

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 179 VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 336

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 337 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 428


>gi|294852367|ref|ZP_06793040.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
 gi|294820956|gb|EFG37955.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|254704332|ref|ZP_05166160.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706767|ref|ZP_05168595.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|256061132|ref|ZP_05451286.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|260566419|ref|ZP_05836889.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261314231|ref|ZP_05953428.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261325135|ref|ZP_05964332.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261755004|ref|ZP_05998713.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|260155937|gb|EEW91017.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261301115|gb|EEY04612.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261303257|gb|EEY06754.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261744757|gb|EEY32683.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|254719117|ref|ZP_05180928.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306838401|ref|ZP_07471246.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
 gi|306406541|gb|EFM62775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|17987226|ref|NP_539860.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|260564046|ref|ZP_05834532.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|265991125|ref|ZP_06103682.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17982898|gb|AAL52124.1| vitamin b12-dependent ribonucleotide reductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154062|gb|EEW89154.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|263001909|gb|EEZ14484.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|265984108|ref|ZP_06096843.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264662700|gb|EEZ32961.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|148560410|ref|YP_001258980.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|148371667|gb|ABQ61646.1| B12-dependent ribonucleoside diphosphate reductase [Brucella ovis
           ATCC 25840]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|254693756|ref|ZP_05155584.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214030|ref|ZP_05928311.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260915637|gb|EEX82498.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|254714125|ref|ZP_05175936.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 723 -YSESQIAEIEAYAVGHGNLNQAP 745


>gi|23501921|ref|NP_698048.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|256369467|ref|YP_003106975.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|23347864|gb|AAN29963.1| ribonucleotide reductase domain protein [Brucella suis 1330]
 gi|255999627|gb|ACU48026.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|161618992|ref|YP_001592879.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|161335803|gb|ABX62108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella canis ATCC 23365]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDCDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|254716817|ref|ZP_05178628.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261218618|ref|ZP_05932899.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261321884|ref|ZP_05961081.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|260923707|gb|EEX90275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261294574|gb|EEX98070.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1264

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNLNQAP 748


>gi|163843310|ref|YP_001627714.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163674033|gb|ABY38144.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella suis ATCC 23445]
          Length = 1267

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 137/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMRACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GN+ + P
Sbjct: 726 -YSESQIAEIEAYAVGHGNLNQAP 748


>gi|254701790|ref|ZP_05163618.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261752346|ref|ZP_05996055.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261742099|gb|EEY30025.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 1261

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|254710126|ref|ZP_05171937.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|256031621|ref|ZP_05445235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261317676|ref|ZP_05956873.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|265988710|ref|ZP_06101267.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261296899|gb|EEY00396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|264660907|gb|EEZ31168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 1261

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|320008140|gb|ADW02990.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces flavogriseus ATCC 33331]
          Length = 967

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 144/588 (24%), Positives = 243/588 (41%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 135 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 193

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 194 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 252

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 253 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVEAGGK 309

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    G+  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 310 -FGL------RARMTGD--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPES 360

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 361 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELVIT 415

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++   +R +G+G     + L      Y S     +A      +
Sbjct: 416 AMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 475

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   Q V    S      VR D+L   +   +   W
Sbjct: 476 TGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDANAVAVRMDDLDAPVWAAATEAW 535

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 536 QDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 594

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M  +
Sbjct: 595 GTVPQALRRLGYQPEQIEAIVAHIADHGNVVDAP-GLKTEHYEVFDCAMGERSISAMGHV 653

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 654 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 701


>gi|317503716|ref|ZP_07961733.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
 gi|315665237|gb|EFV04887.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
          Length = 861

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 146/654 (22%), Positives = 262/654 (40%), Gaps = 120/654 (18%)

Query: 341 EFYNLLSSFHFMC---STPTLFNSGTRHPQLSSCFLTTVPD--DLYG-IFGALQENAMLA 394
           E + LL  F ++    S  T   +  +   LS+CF+  +    D YG I    +E   L 
Sbjct: 74  EVFELLDHFRYIVPAGSPMTGIGNNQQVASLSNCFVIGLDGKADSYGAIMRIDEEQVQLM 133

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+   +  
Sbjct: 134 KRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSI 192

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D E F+D +   G    +    N +  + D FM     +  +    P          
Sbjct: 193 KHPDSEAFIDAKMEEG----KVTGANVSVKLDDDFMNAAINDKTYVQQWP---------- 238

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQ 573
                          D  + KV ++I A  LW K++   +++  P + F D     S P 
Sbjct: 239 --------------IDAEKPKVQKEIEARKLWEKIVHNAWKSAEPGVLFWDTIIKESIPD 284

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTI 625
            +  +     S+N C EI L         C L SINL ++         +FD++K    +
Sbjct: 285 CYADLGFRTVSTNPCGEIPLCPYDS----CRLLSINLYSYVEKPFTKEARFDFEKFKKHV 340

Query: 626 RTAVRVLDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLM 661
           + A R++D+++D+                          H  EK K+ +   R  G+G+ 
Sbjct: 341 QFAQRIMDDIVDLEMEKINLIIEKIKQDPESNEVKDAEYHLWEKIKRKSGMGRRTGVGIT 400

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y + EA + +    + ++ +A  +SV +A+ERGA+  +         F
Sbjct: 401 AEGDMLAALGLRYGTQEATDFSVLVHKTLALNAYRSSVTMAKERGAFEIYDAKRESNNPF 460

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            +     + E   EL  +             ++  G RN  C+ IAPT T + +   +  
Sbjct: 461 VL----RIKEADPELYAD-------------MQQYGRRNIACLTIAPTGTTSLMTQTTSG 503

Query: 782 IDPSYQNLYVK--------SNMSGDFT--VVNSFLVNELKQRDLWDEAMI----SDLKYH 827
           I+P +  +Y +        +++  DF   V +SF    +  R       +    ++ +Y 
Sbjct: 504 IEPVFMPVYKRRRKVNPNDADVHVDFVDEVGDSFEEYIVYHRKFLKWMQVNGYDTEKRYS 563

Query: 828 DGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
              I N + + P       ATA ++D +  ++     QKW+D + S+ + L     + L 
Sbjct: 564 QEEIDNLVAKSP----YYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDETLV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           + +Y +AW  G K     R  S   V           + +V   D    TH+ G
Sbjct: 620 NRLYVEAWKSGCKGCTIYRDGSRAGV-----------MISVSKKDKKKGTHAEG 662


>gi|306840527|ref|ZP_07473286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
 gi|306289542|gb|EFM60760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
          Length = 1264

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDVAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIVHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|75538786|sp|O54196|NRDJ_STRCL RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|3402271|emb|CAA12167.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus]
          Length = 961

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 240/590 (40%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE       + +
Sbjct: 250 GFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDE-------FMR 299

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GEI    ++ A AL+RKM    +    P I + D  N        
Sbjct: 300 AVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++ A  +   + 
Sbjct: 358 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     IA      +
Sbjct: 413 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLM 472

Query: 691 SFHAISASVELAQERGAYSSFK------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  +   S ELA   G Y  +         +  Q     D+   + ++   +    T   
Sbjct: 473 TGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE-- 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 590 VNGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAP-GLKTEHYKVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + + E +  ++++ IY +AW MG+K     R
Sbjct: 649 HVRMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYR 698


>gi|228957725|ref|ZP_04119469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229108908|ref|ZP_04238512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674564|gb|EEL29804.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228801968|gb|EEM48841.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 440

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 209/464 (45%), Gaps = 61/464 (13%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I  E Y
Sbjct: 3   KKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID-EMY 61

Query: 526 ERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G V  S
Sbjct: 62  DELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMS 119

Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLCTEI  L  +SE               CNLGS+N++    N +   + + + +     
Sbjct: 120 NLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGMEALTA 178

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 179 VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 336

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 337 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 428


>gi|315502612|ref|YP_004081499.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
 gi|315409231|gb|ADU07348.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
          Length = 964

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 139/586 (23%), Positives = 239/586 (40%), Gaps = 62/586 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + +   G G + + +R 
Sbjct: 140 FSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILDWYKEEGRIFQGGSGAGVNLSRIRS 199

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 200 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVATKAR 258

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL    +     QNA  ++     VSD       EF  A EN
Sbjct: 259 EEDKIRALRD---AGFDMDLGGADIVSVQYQNANNSV----RVSD-------EFMTAVEN 304

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +  +    I A  L+  +    +E   P + + D  N        G + +S
Sbjct: 305 GGGFDLRGRLDGQTIETIDAKKLFHTISQAAWECADPGLQYDDTINDWHTCPETGRITAS 364

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    A+  F+ +K   ++   +  +D  I    
Sbjct: 365 NPCSEYLHLDNSS-----CNLASLNLMKFLRADGGFEVEKFVKSVEFVITAMDISICFAD 419

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L    +PY S +  E++      ++  A   S E
Sbjct: 420 FPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVSAAITSLMTGTAYRRSAE 479

Query: 701 LAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           LA   G Y  +            K +  +  + P  ++          A+ R +   W  
Sbjct: 480 LAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKPTGTVA--------TAVQREATKQWTL 531

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
             K     G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  +
Sbjct: 532 GNKLGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTV 591

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L+    + E  +  +  H    G++   P  LK  H   F+       I PM  +  
Sbjct: 592 PRALRSLG-YPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRM 649

Query: 860 ASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +  Q +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 650 MAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYR 695


>gi|284165414|ref|YP_003403693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
 gi|284015069|gb|ADB61020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
          Length = 1042

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 184/468 (39%), Gaps = 107/468 (22%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A EF  ++ +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EDVAEEFQGMMENLDFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWQLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFL-----------DLRKNTGDD-------------RRRTHD------------- 478
           H DV +F+            LR N  DD             R    D             
Sbjct: 262 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALDEARELIDDEGKVPKHLRNAVE 321

Query: 479 -----MNTANWIPDLFMKRVTQNAGWTLFSP---------DEVSDLHDLYGKEFEIAYEN 524
                 N +  I D FM+ +     +T  +P          E  +L+D++G         
Sbjct: 322 GHLSNFNISVGITDDFMEALQNGEEFTFTNPRTGEPHIATAETKELYDMFGL-------- 373

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH---- 580
                D  E+     I A  LW  ++    E G P + + +  N    +QH   V     
Sbjct: 374 ----GDYVEVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVN----KQHSFDVEKHPD 425

Query: 581 ----SSNLCTEITLNSSSEETAVCNLGSINL----------------------------L 608
               ++N C E  L    EE   CNLG INL                            +
Sbjct: 426 HRILATNPCGEQPL----EEYEACNLGHINLSTLADLEAPDWRVWYDEHGEEYDSLEDAV 481

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
             F     D+++    I    R L+NV+ ++   +EK ++     R IGLG+MG      
Sbjct: 482 DAFLEEAIDFEEFDRRIEMGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYI 541

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            L + Y S  + E+A + M  I+  +  AS ELA+ERG++  +  S +
Sbjct: 542 QLGMEYGSETSNEVARQLMRHINHGSKWASHELAEERGSFDEWDNSKY 589


>gi|294815514|ref|ZP_06774157.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443865|ref|ZP_08218599.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328113|gb|EFG09756.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 961

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 240/590 (40%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE       + +
Sbjct: 250 GFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDE-------FMR 299

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GEI    ++ A AL+RKM    +    P I + D  N        
Sbjct: 300 AVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++ A  +   + 
Sbjct: 358 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     IA      +
Sbjct: 413 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLM 472

Query: 691 SFHAISASVELAQERGAYSSFK------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  +   S ELA   G Y  +         +  Q     D+   + ++   +    T   
Sbjct: 473 TGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE-- 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 590 VNGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAP-GLKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + + E +  ++++ IY +AW MG+K     R
Sbjct: 649 HVRMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYR 698


>gi|254391044|ref|ZP_05006252.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704739|gb|EDY50551.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 965

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 240/590 (40%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 136 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 194

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 195 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 253

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++   DE       + +
Sbjct: 254 GFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDE-------FMR 303

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GEI    ++ A AL+RKM    +    P I + D  N        
Sbjct: 304 AVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPES 361

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++ A  +   + 
Sbjct: 362 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVIT 416

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     IA      +
Sbjct: 417 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLM 476

Query: 691 SFHAISASVELAQERGAYSSFK------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  +   S ELA   G Y  +         +  Q     D+   + ++   +    T   
Sbjct: 477 TGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE-- 534

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 535 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 593

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 594 VNGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAP-GLKTEHYEVFDCAMGERSISAMG 652

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + + E +  ++++ IY +AW MG+K     R
Sbjct: 653 HVRMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYR 702


>gi|145594000|ref|YP_001158297.1| vitamin B12-dependent ribonucleotide reductase [Salinispora tropica
           CNB-440]
 gi|145303337|gb|ABP53919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora tropica CNB-440]
          Length = 963

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 139/587 (23%), Positives = 245/587 (41%), Gaps = 64/587 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 135 FSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILDWYKEEGLIFKGGSGSGVNLSRIRS 194

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 195 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVVTKAR 253

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDLYGKEFEIAYE 523
             D  R   D   A +  DL    +     QNA  ++   DE ++ + D  G  F++   
Sbjct: 254 EEDKVRALRD---AGFDMDLGGADIVSVQYQNANNSVRVSDEFMTAVQD--GGTFDL--- 305

Query: 524 NYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                  RG +   V   I A +L+R +    +E   P + + D  N        G + +
Sbjct: 306 -------RGRLDGTVIDTIDAKSLFRTISQAAWECADPGLQYDDTINDWHTCPETGRITA 358

Query: 582 SNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E + L++SS     CNL S+NL+    A+  F+ +K   ++   +  +D  I   
Sbjct: 359 SNPCSEYLHLDNSS-----CNLASLNLMRFLRADGGFEVEKFVRSVELVITAMDISICFA 413

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               EK  ++   +R +G+G     + L    +PY S +   +A      ++  A   S 
Sbjct: 414 DFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYGSDQGRSLAAAITSLMTGTAYRRSA 473

Query: 700 ELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           ELA   GAY  +            K +  +  + P  ++          A+ R +   W 
Sbjct: 474 ELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGAVA--------TAVQREATRQWT 525

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSF 805
              K     G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  
Sbjct: 526 LGNKVGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQT 585

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIE 858
           +   L+     +E + + ++Y     G++   P  L+  H   F+       I PM  + 
Sbjct: 586 VPRALRSLGYPEEQVEAIVEYI-AEHGHVVDAP-GLRPEHYPVFDCAMGERSIAPMGHVR 643

Query: 859 SASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
             +  Q +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 644 MMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYR 690


>gi|302866053|ref|YP_003834690.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
 gi|302568912|gb|ADL45114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
          Length = 964

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 140/580 (24%), Positives = 239/580 (41%), Gaps = 50/580 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + +   G G + + +R 
Sbjct: 140 FSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILDWYKEEGRIFQGGSGAGVNLSRIRS 199

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 200 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVATKAR 258

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL    +     QNA  ++     VSD       EF  A EN
Sbjct: 259 EEDKIRALRD---AGFDMDLGGADIVSVQYQNANNSV----RVSD-------EFMTAVEN 304

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +  +    I A  L+  +    +E   P + + D  N        G + +S
Sbjct: 305 GGGFDLRGRLDGQTIETIDAKKLFHTISQAAWECADPGLQYDDTINDWHTCPETGRITAS 364

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    A+  F+ +K   ++   +  +D  I    
Sbjct: 365 NPCSEYLHLDNSS-----CNLASLNLMKFLRADGGFEVEKFVKSVEFVITAMDISICFAD 419

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L    +PY S +  E++      ++  A   S E
Sbjct: 420 FPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVSAAITSLMTGTAYRRSAE 479

Query: 701 LAQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           LA   G Y  +  +      +  +     D+I     V    A+ R +   W    K   
Sbjct: 480 LAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKATGTV--ATAVQREATKQWTLGNKLGD 537

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQ 812
             G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  +   L+ 
Sbjct: 538 KFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTVPRALRS 597

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
              + E  +  +  H    G++   P  LK  H   F+       I PM  +   +  Q 
Sbjct: 598 LG-YPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRMMAAVQP 655

Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 656 FISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYR 695


>gi|254255489|ref|ZP_04948805.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124901226|gb|EAY71976.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 636

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 215/518 (41%), Gaps = 68/518 (13%)

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G D++PV    A+         GV   +   +     +   G R+GA  A L   H
Sbjct: 152 GGGIGYDFSPVPPESAY-DARRAAESGVCAAIDRFDAMCGTLPFSGPRRGAQMAVLRCDH 210

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  F+  +      R R    N +  I D FM+ V  +  W L  P            
Sbjct: 211 PDLAAFVAAKNR----RLRWTTFNVSVGITDAFMEAVAYDRPWALVHPS----------P 256

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            +  +  + ER AD   +     +SA ALW +++T   ++  P + F D  N  +P +  
Sbjct: 257 RYAASAASSER-ADGQHLHAI--VSARALWHRIVTAARDSAEPGLLFLDTINDANPLRDH 313

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL-------LAHFANNQFDYDKLASTIRTAV 629
             + ++N C E  L         C LG I+L               FD+D LA  +R  V
Sbjct: 314 ERIDATNPCGEQPLPPYGS----CVLGPIDLSRFVRRPFGCGGEPAFDFDTLADAVRIQV 369

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV+D+    +   ++     R IG+G+ G   AL +L + Y S +A  +A   +  
Sbjct: 370 RMLDNVLDLTNWPLAAHEREARRTRRIGVGVTGLGDALTMLRLRYDSADARAVARSIVLT 429

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  HA SAS  LA ERGA+ +F+ S +  G  P   + L  +V   +A +          
Sbjct: 430 MREHAFSASARLAAERGAFPAFEPSAYLAG--PAHRMPLPLKVHHAIARH---------- 477

Query: 750 KKRVKTIGMRNSNCMAIAPTATIA-NIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                  G+RNS+ ++ AP  +++   C   S  I+P+   +  ++  + D   V +F V
Sbjct: 478 -------GLRNSHLLSFAPAGSVSLAFCDNCSNGIEPALGWVQHRTVRTADGN-VRAFRV 529

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                R L+ E        H   +G    +PD      ATA +I P   +   +  Q  +
Sbjct: 530 ENHAYR-LFRE-------LHGDGVG----LPD----YFATAADIAPADHVAMLAALQPCV 573

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           D   S  + +  + S  ++D ++  AW   LK     R
Sbjct: 574 DAGISKTVAMRRQCSLSQVDELFFLAWRERLKGITIFR 611


>gi|29829003|ref|NP_823637.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           avermitilis MA-4680]
 gi|81720079|sp|Q82KE2|NRDJ_STRAW RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|29606109|dbj|BAC70172.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces avermitilis MA-4680]
          Length = 964

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 245/588 (41%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 131 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 189

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 190 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 248

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 249 DFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDTFMK 298

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +        GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 299 AVEEGGKFGLTSRMTGE--VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPES 356

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+    ++      F+ ++ A  +   + 
Sbjct: 357 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGRQSFEVERFAKVVELVIT 411

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 412 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 471

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   Q V     D+ G+   V D +  +   +   W
Sbjct: 472 TGTSYKRSAELAAVVGPYDGYARNAQPHQRVMKQHSDANGVAVRVDDLDTPIWAAATEAW 531

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++    +  G RN+    IAPT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 532 QDVLHLGEKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 590

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I  M  +
Sbjct: 591 GTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAP-GLKHEHYEVFDCAMGERSISAMGHV 649

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 650 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 697


>gi|49184286|ref|YP_027538.1| ribonucleoside-diphosphate reductase subunit alpha, group I
           intron-containing [Bacillus anthracis str. Sterne]
 gi|49178213|gb|AAT53589.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Sterne]
          Length = 440

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 210/464 (45%), Gaps = 61/464 (13%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I  E Y
Sbjct: 3   KKINVDEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID-EMY 61

Query: 526 ERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +      ++K  +K   ISA  +  K+  +  E+G+P++ FK   N + P + +G V  S
Sbjct: 62  DELMSNPKVK--KKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMS 119

Query: 583 NLCTEI-TLNSSSE-----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLCTEI  L  +SE               CNLGS+N++    N +   + + + +     
Sbjct: 120 NLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKEIR-EAVHAGMEALTA 178

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 179 VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 336

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 337 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 428


>gi|257387814|ref|YP_003177587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
 gi|257170121|gb|ACV47880.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
          Length = 1053

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 188/461 (40%), Gaps = 93/461 (20%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A EF + + +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 ENVAGEFQDAMENLSFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWQLRPYGDQVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFL-----------DLRKNTGDD-------------------------------R 473
           H DV +F+            LR N  DD                                
Sbjct: 262 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDEDGKVPKHLRNAVE 321

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE--RQADR 531
               + N +  I D FM  +     +T  +P   ++ H +  +E +  YE ++     + 
Sbjct: 322 GHLSNFNISVGITDDFMDALEAGEEFTFTNP-RTNEPH-VATEETQELYEMFDLGEYVEA 379

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--------SSN 583
           GE+     I A  LW +++    E G P + + +  N    +QH   V         ++N
Sbjct: 380 GEV---LSIPAEKLWERIIGGAHENGEPGVIYLERVN----KQHSFDVEEHPDHRILATN 432

Query: 584 LCTEITLNSSSEETAVCNLGSINLL---------------AH-------------FANNQ 615
            C E  L    EE   CNLG INL                AH             F ++ 
Sbjct: 433 PCGEQPL----EEYEACNLGHINLSTLADQDAPDWRVWSDAHADEYDALEDAVDAFLDDA 488

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D ++    I    R L+NV+ ++   +EK ++     R IGLG+MG       L + Y 
Sbjct: 489 LDNEEFQRRIELGTRFLENVVTMSDFPVEKIEEKVREMRKIGLGIMGLAQLYIQLGVKYG 548

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           S E  EIA + M  I+  +  AS ELA++RG +  +  S +
Sbjct: 549 SEEGDEIARQIMRQINHGSKWASHELAEDRGTFDEWDNSKY 589


>gi|291454575|ref|ZP_06593965.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
 gi|291357524|gb|EFE84426.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 965

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 142/589 (24%), Positives = 246/589 (41%), Gaps = 49/589 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 140 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 198

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 199 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 257

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F+  + +  +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 258 DFIQTKVSEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDAFMK 307

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 308 AVESGSTFGLRARMTGE--VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPES 365

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ +  +   + 
Sbjct: 366 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFESERFSKVVELVIT 420

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 421 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 480

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   Q V    +      VR D+L   +   +   W
Sbjct: 481 TGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAW 540

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGDFTVVN 803
            ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  +  G   +VN
Sbjct: 541 QDVVRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 599

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   L++ + + E  I  +  H    GN+   P  LK  H   F+       I  M  
Sbjct: 600 GTVPQALRRMN-YSEEQIEAIVAHIAEHGNVIDAP-ALKPEHYEVFDCAMGERSISAMGH 657

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q WI  A S  + L E +  + ++ +Y +AW +G+K     R
Sbjct: 658 VRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKLGVKALAIYR 706


>gi|239996351|ref|ZP_04716875.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 367

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 161/376 (42%), Gaps = 22/376 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G   S + +++  +V  A  GL++VS   V  +     YDG++ S++   LI 
Sbjct: 5   LLVTKRNGEKESIDLEKIHKVVTWAAKGLKNVSVSQVEIKAQIQFYDGINTSEIHETLIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  + P+Y  + AR  +  LR++     ++ P    H            + ++ G
Sbjct: 65  SAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALLEH----------VGKMVDMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDKHLLEDYTPEEFAEMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + VA  L     +K  R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 ILVAACL-FANYDKATRMDYIRRFYDAASTFKLSLPTPIM--AGVRTPTRQFSSCVLIET 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 231 GDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++
Sbjct: 291 SCSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKD 350

Query: 497 AGWTLFSPDEVSDLHD 512
              +LFSP +V  L+D
Sbjct: 351 GYISLFSPSDVPGLYD 366


>gi|260168749|ref|ZP_05755560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261758230|ref|ZP_06001939.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
 gi|261738214|gb|EEY26210.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
          Length = 1261

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 603 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 663 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 723 YSESQIAEIEAYAVGHGNLNQAP 745


>gi|225627518|ref|ZP_03785555.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
 gi|225617523|gb|EEH14568.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
          Length = 1264

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 233/563 (41%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 192 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 250

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 251 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 310

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 311 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 370

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 371 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 429

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 430 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF---LD 486

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +      +  + ++ +R
Sbjct: 487 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 546 TLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 605

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  +   +R  WD+  +  +  
Sbjct: 606 AQHMLRVIRNHRRAAHGERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWDKALELGEKH 665

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   
Sbjct: 666 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 725

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + E+ I++++ +    GN+ + P
Sbjct: 726 YSESQIAEIEAYAVGHGNLNQAP 748


>gi|239982726|ref|ZP_04705250.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 924

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 142/589 (24%), Positives = 246/589 (41%), Gaps = 49/589 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 99  YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 157

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 158 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 216

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F+  + +  +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 217 DFIQTKVSEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDAFMK 266

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E       R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 267 AVESGSTFGLRARMTGE--VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPES 324

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ +  +   + 
Sbjct: 325 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFESERFSKVVELVIT 379

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 380 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 439

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   Q V    +      VR D+L   +   +   W
Sbjct: 440 TGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAW 499

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGDFTVVN 803
            ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  +  G   +VN
Sbjct: 500 QDVVRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 558

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   L++ + + E  I  +  H    GN+   P  LK  H   F+       I  M  
Sbjct: 559 GTVPQALRRMN-YSEEQIEAIVAHIAEHGNVIDAP-ALKPEHYEVFDCAMGERSISAMGH 616

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q WI  A S  + L E +  + ++ +Y +AW +G+K     R
Sbjct: 617 VRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKLGVKALAIYR 665


>gi|21224150|ref|NP_629929.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           coelicolor A3(2)]
 gi|81816916|sp|O69981|NRDJ_STRCO RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|2995313|emb|CAA18341.1| ribonucleotide reductase [Streptomyces coelicolor A3(2)]
 gi|68449794|emb|CAJ01782.1| vitamin B12-dependent ribonucleotide reductase (class II)
           [Streptomyces coelicolor A3(2)]
          Length = 967

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 244/589 (41%), Gaps = 49/589 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDLYG 515
           +F+  +    +  R   D   A +  DL    +T    QNA  ++   D  +  + D  G
Sbjct: 250 DFIQTKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQD--G 304

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +F +          R   +V  ++ A AL+RKM    +    P I + D  N       
Sbjct: 305 GKFGLT--------SRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTINAWHTCPE 356

Query: 576 VGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
            G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++ +  +   +
Sbjct: 357 SGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFDAERFSKVVELVI 411

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             +D  I       +K  ++    R +G+G     + L      Y S     +A      
Sbjct: 412 TAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSL 471

Query: 690 ISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLP 745
           ++  +   S ELA   G Y  + + +     V    S      VR D+L   +   +   
Sbjct: 472 MTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATEA 531

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           W ++ +  +  G RNS    IAPT TI  A  C  +  ++P    +  K  + G    + 
Sbjct: 532 WQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIV 590

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
           +  V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I  M  
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAP-GLKPEHYEVFDCAMGERSISAMGH 649

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 650 VRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|326536371|ref|YP_004300812.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
 gi|299483452|gb|ADJ19546.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
          Length = 803

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 198/463 (42%), Gaps = 35/463 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI- 203
           +K++   G    F+  ++  ++E +C G Q ++   +       + D ++ ++++ A++ 
Sbjct: 1   MKVIKSSGIAQDFDPAKIIQVLEWSCEGTQ-INPYELYERAQPFIKDQMTTAEIQRAIVK 59

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP----QKATHHEMQCLYPEYFCRY 259
            ++ ++  +E +Y  V +   +  LR+EV    +  P    Q     ++    PE   +Y
Sbjct: 60  VAADSITVEESDYQFVASNLAMFGLRKEVYGQ-FDPPHLLAQVKAKTDLGVYDPEIVQKY 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
             E              +   L   + ++RDF F Y G   + D+Y +    NG+  E P
Sbjct: 119 SAE--------------EFEELNRYINHDRDFNFTYAGTMQMKDKYLVKDRSNGAIHETP 164

Query: 318 QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372
           Q  FM + M L  +E EK KR     +FY+ +S       TP +  +G R P  Q SSC 
Sbjct: 165 QFTFMLIGMCLH-QEDEKSKRLQYVKDFYDAVSLKQISLPTPIM--AGVRTPTRQFSSCV 221

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L    D L  I               G+G     +R  G+ I     K  GV PF K  N
Sbjct: 222 LIESGDSLDSINETSSAIISYVSKRAGIGVSGGAIRAEGSKIGPGEVKHTGVTPFWKHFN 281

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               + +QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L ++R
Sbjct: 282 TGVHSCSQGGIRKGSATCYWPGWHLECENLIVLKNNKGIEENRIRHMDYGIQLNNLMIER 341

Query: 493 VTQNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM-L 550
              N   TLFSP+     L D +  + E+    YE+      ++  ++I A   ++ + +
Sbjct: 342 YLNNDYITLFSPEINGGQLRDAFYADEELFRTMYEQLEATPAVRK-KRIKATEYFQSLFM 400

Query: 551 TMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS 592
                T   +    D  N   P  + +  V  SNLC EI L++
Sbjct: 401 PERANTARIYPQHVDNANNFGPWIRSIAPVKMSNLCAEIALHT 443



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 587 EITLNSSSE--ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI+LN   +  E A+C L +  L      NQ + +++    +  VR LDN++D   +  +
Sbjct: 495 EISLNVQEDLGEIALCTLSAWVLDNFDWKNQDEVNRIG---KVMVRALDNLLDYQDYPHQ 551

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A K+   +R++G+G+  +   L      Y      E + E  E + +  ++AS++LA+E
Sbjct: 552 NALKAKE-YRSLGIGVTNYAGWLAANASSYEDDH--ETSHELFERLQYALVNASIDLAEE 608

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G       + + QG+ PID       V D +A N    + W++ + R+   GMRN    
Sbjct: 609 KGPSPMLYKTKYGQGLLPID--WYCKNVDDLVAPNYV--MDWEDTRARLIKFGMRNVTLS 664

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEA 819
           A  P  T + +   +  ++ + + +  K +  G F  +V ++ +N +     W+ A
Sbjct: 665 AQMPCETSSQVSNSTNGVERALKPVSYKQSKDGSFNQIVPNYDINSVFYEFAWESA 720


>gi|311993500|ref|YP_004010365.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
 gi|295917457|gb|ADG60128.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
          Length = 803

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 199/470 (42%), Gaps = 49/470 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALI 203
           +K++   G    F   ++  ++E +C   +   +   L E  +  + D ++ ++++ A++
Sbjct: 1   MKVIKSSGIAQDFIPAKIIQVLEWSCE--KTTINPYELFELCQPFFKDEMTTTEIQRAIV 58

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH----HEMQCLYPEYFCR 258
             S   I+  + +Y  V +      LR+EV    +  P    H     ++    PE   R
Sbjct: 59  KVSADSIQIDQTDYQYVASNLAQFGLRKEVYGQ-FDPPHLYDHVVAKTDVGIYDPEIIER 117

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEM 316
           Y  E   A     +M+D D           RDF F Y G   + D+Y +    +G   E 
Sbjct: 118 YTREEFDAL---NAMIDHD-----------RDFNFTYAGTMQMKDKYLVKDRSSGEIFET 163

Query: 317 PQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCF 372
           PQ  +M + M L   E   ++     +FY+  S F     TP L  +G R P  Q SSC 
Sbjct: 164 PQFLYMLIGMCLHQNENPAKRLQYIKDFYDAASQFKISLPTPIL--AGVRTPTRQFSSCV 221

Query: 373 LTTVPDDLYGIFGALQENAMLAKY---SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           L    DDL  I    +  + + KY     G+G     +R  G+ I     K  GV PF K
Sbjct: 222 LIETGDDLESI---TETTSAIVKYVSKRAGIGISGGAIRAEGSKIGPGEVKHTGVTPFWK 278

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + N    + +QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L 
Sbjct: 279 LKNAAVHSCSQGGIRKGSATCYWPIWHLECENLMVLKNNKGIEENRIRHMDYGIQLNNLM 338

Query: 490 MKRVTQNAGWTLFSPDEVSD---LHDLYGKE--FEIAYENYERQADRGEIKVFRKISAVA 544
           ++R   N   TLFS  E++    L   Y  E  F   YE  ER     +    ++I A  
Sbjct: 339 IERYLTNDYVTLFST-EINGGKLLESYYADEELFRTMYEELERNPAIRK----KRIKATE 393

Query: 545 LWRKM-LTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS 592
           L++ + +T    T   +    D  N   P  + +  V  SNLC EI L++
Sbjct: 394 LFQGLFMTERANTARLYPQHVDNTNNFGPWIRSIAPVKMSNLCAEIALHT 443



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 42/293 (14%)

Query: 587 EITLNSSSE--ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI  N   +  E A+C L +  L      +Q + +++   +   VR LDN++D   +  +
Sbjct: 495 EIAFNVQEDLGEIALCTLSAWVLDNFDWRDQEEVNRIGMVM---VRALDNLLDYQDYPHQ 551

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A K+   +R++G+G+  + + L      Y      E   E  E + +  I+AS++LA+E
Sbjct: 552 NALKAKE-YRSLGIGVTNYAAWLASNASSYEDDH--ETTHELFERLQYALINASIDLAEE 608

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G       + + +G  PID      +  DELA      L W+  + R+K IGMRN    
Sbjct: 609 KGPSPQLHKTKYGRGELPID---WYCKNVDELA-PPVYVLDWEATRTRLKIIGMRNVTLS 664

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISD 823
           A  P  + + +   +  I+   + +  K +  G F  VV ++ VN++     W+ A    
Sbjct: 665 AQMPCESSSQVSNSTNGIERPLKPVSYKQSKDGSFNQVVPNYEVNQMFYEFAWESAA--- 721

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            K+  G+ G + +                 M +I      QKW DQA SLN Y
Sbjct: 722 -KF--GNKGYLAK-----------------MAVI------QKWTDQAISLNTY 748


>gi|331668938|ref|ZP_08369786.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064132|gb|EGI36043.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 412

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 181/407 (44%), Gaps = 60/407 (14%)

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQ 574
           +EFE  Y  YE+     +    +++ AV L+  M+     TG  +I   D CN  SP   
Sbjct: 24  EEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDP 79

Query: 575 HVGVVHSSNLCTEITL--------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            +  V  SNLC EI L        N  + E A+C L + NL A  +      D+L     
Sbjct: 80  AIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINS-----LDELEELAI 134

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR LD ++D   + I  AK+     R +G+G++ F   L      Y+   A  +  ++
Sbjct: 135 LAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKT 194

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +  D +A N      W
Sbjct: 195 FEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDT---YKKDLDAIA-NEPLHYDW 250

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K++  G   ++   +
Sbjct: 251 EALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG---ILRQVV 307

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            +     D ++  ++ ++  +DG                           ++     QK+
Sbjct: 308 PDYEHLHDAYE--LLWEMPGNDG--------------------------YLQLVGIMQKF 339

Query: 867 IDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSR 906
           IDQ+ S N   D    PSGK    +L      A+  G+KT YY  +R
Sbjct: 340 IDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTR 386


>gi|282862309|ref|ZP_06271371.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
 gi|282562648|gb|EFB68188.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
          Length = 971

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 147/603 (24%), Positives = 247/603 (40%), Gaps = 51/603 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 135 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 193

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 194 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 252

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 253 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 298

Query: 517 EFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N      
Sbjct: 299 EFMKAVESGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCP 358

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTA 628
             G ++ SN C+E + L+++S     CNL S+NL+    ++      F+ ++ A  +   
Sbjct: 359 ESGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGEGHQSFEAERFAKVVELV 413

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 414 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRSLAGAITS 473

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRL 744
            ++  +   S ELA   G Y  + + +   Q V    S      VR D+L   +   +  
Sbjct: 474 LMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDANATAVRVDDLDSPVWAAATE 533

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +     G RNS    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 534 AWQDVLRLGAKNGFRNSQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 592

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 593 VNGTVPQALRRLGYQAEQIEAIVAHIAENGNVIDAP-SLKTEHYEVFDCAMGERSISAMG 651

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R         S
Sbjct: 652 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 711

Query: 915 TLK 917
           T K
Sbjct: 712 TKK 714


>gi|254386108|ref|ZP_05001422.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
 gi|194344967|gb|EDX25933.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
          Length = 961

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 144/590 (24%), Positives = 244/590 (41%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 133 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 191

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 192 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 250

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 251 AFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 296

Query: 517 EFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A EN      R  +  +V  K+ A AL+RK+    +    P I +    N      
Sbjct: 297 EFMTAVENGTEFGLRSRMTGEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCP 356

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
             G + +SN C+E + L+++S     CNL S+NL+         N  FD ++ A  +   
Sbjct: 357 ESGRITASNPCSEYMHLDNTS-----CNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRL 744
            ++  A   S ELA   G Y  + + +   + V     D+       +D +  +   +  
Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADAHKRVMKQHADANATAPRTQDLDNTIWAAATE 531

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RNS    +APT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 532 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQI 590

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  + E  I  +  H    G +   P  LK  H   F+       I  M 
Sbjct: 591 VNGTVPQALRRLGYQEEQIEAIVTHIAEHGVVVDAP-GLKTEHYEVFDCAMGERSISAMG 649

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + + E +  ++++ IY +AW MG+K     R
Sbjct: 650 HVRMMAAIQPWISGAISKTVNMPETATVEEIEEIYFEAWKMGVKALAIYR 699


>gi|108760764|ref|YP_631136.1| vitamin B12-dependent ribonucleotide reductase [Myxococcus xanthus
           DK 1622]
 gi|108464644|gb|ABF89829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Myxococcus xanthus DK 1622]
          Length = 930

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 153/642 (23%), Positives = 245/642 (38%), Gaps = 117/642 (18%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           V  G   ++ ++E    E  +LL       ++P  FN G    PQ S+CF+ +V D++  
Sbjct: 117 VEGGYFTRDADREAFHAELTHLLLRQKASFNSPVWFNVGVEAQPQCSACFINSVEDNMDS 176

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I    +   ML KY  G G++ + +RG    + G  G + G + F++  +  A  +  GG
Sbjct: 177 ILTLARTEGMLFKYGSGTGSNLSTIRGSKELLAG-GGTASGPVSFMRGFDAFAGVIKSGG 235

Query: 443 K-RKGAVCAYLETWHIDVEEFLDLRKN-----------------TGDDRRRTHDMNTAN- 483
           K R+ A    L   H D+ EF+  + +                  G+        N+ N 
Sbjct: 236 KTRRAAKMVILNAEHPDILEFIRCKSSEEKKAWALIEAGYDPSFNGEAYSSVFFQNSNNS 295

Query: 484 -WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FMK V  +A WT  S  +   L     +E                  +FR+IS 
Sbjct: 296 VRVTDAFMKAVVDDATWTTRSVRDGQPLDTYQARE------------------LFREISE 337

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            A            G P + F    N          +++SN C+E      S     CNL
Sbjct: 338 AA---------HLCGDPGMQFDTTVNSWHTCSTTARINASNPCSEYMFLDDS----ACNL 384

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVL----DNVIDINCHTIEKAKKSNHTHRAIGL 658
            S+NL+ HF     D+D  A   R AV +L    + ++  + +  E+ +K++H +R +GL
Sbjct: 385 ASLNLM-HFRTIDGDFDVTA--FRHAVDILLMAQEIIVGNSRYPTERIEKNSHDYRPLGL 441

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---- 714
           G     + L    +PY SP     A      +   A + S  LA+++G ++ +  +    
Sbjct: 442 GYANLGALLMASGLPYDSPAGRNYAGAITSLMCGEAYAMSARLAEKQGPFAGYAKNAEPM 501

Query: 715 -------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                        +  +GV    S GL A  +D           WD      +  G RNS
Sbjct: 502 LGVIRKHRKAAYHIAPEGV----SQGLFAAQKDA----------WDRALALGEEHGFRNS 547

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNS---FLVNELKQRDLW 816
               +APT TI  +    +  I+P    + Y K    G   +VN      + +L      
Sbjct: 548 QVTVLAPTGTIGFMMDCDTTGIEPDIALIKYKKLVGGGMLKIVNQTVPLALEKLGYPQTQ 607

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ----- 871
            + +IS L   D     IE  P  LK  H   F  D  +      R   W+   Q     
Sbjct: 608 SQDIISYLDKQD----TIEGAP-HLKPEHLPVF--DCAFKPAQGERSIHWMGHIQMMEAC 660

Query: 872 ------SLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLR 904
                 +++  ++ PS   ++ I   Y +AW  GLK     R
Sbjct: 661 QPFLSGAISKTVNMPSDATVEDIEKAYMEAWKRGLKAIAVYR 702


>gi|297191628|ref|ZP_06909026.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719369|gb|EDY63277.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 964

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 245/590 (41%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 250 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 295

Query: 517 EFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N      
Sbjct: 296 EFMKAVESGGKFGLRARMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCP 355

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
             G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++    +   
Sbjct: 356 ESGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFDVERFTKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++   +R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRL 744
            ++  +   S ELA   G Y  + + +   + V    +      VR D+L   +   +  
Sbjct: 471 LMTGTSYKRSAELAAVVGPYDGYARNAEPHKRVMKQHADANTVAVRMDDLDSPIWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 AWQDVIRLGEKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 590 VNGTVPQALRRLGYQPEQIEAIVAHIADHGNVIDAP-GLKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|302554609|ref|ZP_07306951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472227|gb|EFL35320.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
          Length = 959

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 251/595 (42%), Gaps = 61/595 (10%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQV-FSFNSPVWFNVGTAQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 250 DFIETKVKEEEKIRVLRD---AGYDMDLGGDDITSVQYQNANNSV----RVND------- 295

Query: 517 EFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E   +   RG +  +V  ++ A +L+RK+    +    P I + D  N      
Sbjct: 296 EFMKAVEQGGQFGLRGRMTGEVIEEVDAKSLFRKIAEAAWACADPGIQYDDTINGWHTCP 355

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
             G + +SN C+E + L+++S     CNL S+NL+         N  F+ ++    +   
Sbjct: 356 ESGRITASNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFEAERFQKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGV----FPIDSIGLLAEVRDELAMNRTSR 743
            ++  A   S ELA   G Y  + + +   + V    F  +   +  +  D       S 
Sbjct: 471 LMTGTAYRRSSELAAVVGPYDGYARNADAHKRVMKQHFDANDKAVRMDDLDTPVWAAASE 530

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGDFT 800
             W ++ +  +  G RNS    +APT TI  A  C  +  ++P    +  K  +  G   
Sbjct: 531 A-WQDVVRLGEKNGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQ 588

Query: 801 VVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------- 850
           +VN  +   L++    +   EA+++ +  H    GN+   P  LK  H   F+       
Sbjct: 589 IVNGTVPQALRRLGYLEEQNEAIVAHIAEH----GNVIDAP-GLKPEHYEVFDCAMGERA 643

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           I PM  +   +  Q WI  A S  + + E +  ++++ IY +AW +G+K     R
Sbjct: 644 ISPMGHVRMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGVKALAIYR 698


>gi|149408275|ref|YP_001294554.1| hypothetical protein ORF046 [Pseudomonas phage M6]
          Length = 620

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 190/447 (42%), Gaps = 63/447 (14%)

Query: 363 TRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           TR     +C+++   +D +      I     E A   +  GG+G D++ +R  G  I   
Sbjct: 80  TRQVTPYNCYVSGTINDSFVDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIRKL 139

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
              S G I F+ + +     V   G R+GA    +   H D+EEF+   K  G D +   
Sbjct: 140 QSHSSGPISFMHIFDAICKCVASSGHRRGAQMGVMRVDHPDIEEFIHA-KQPGKDVQPLW 198

Query: 478 DMNTANWIPDLFMKR-----VTQNAGWTLFSPDEVSDLHDLY------GKEFEIAYENYE 526
           D+     +P+   K+     + Q    T F+      + D +      G+ F + +E + 
Sbjct: 199 DLVAE--LPEGAQKQQLIMSLQQTLKLTGFNVSVA--ITDKFMECVASGEPFPLTFEGW- 253

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +R++ A ALW  ++   ++   P + F D  N  +   +   + ++N C 
Sbjct: 254 ---------TYREVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATNPCG 304

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         C LGS NL+ +   +      FD+D+    I   VR +DNV+D   +
Sbjct: 305 EQPL----PPYGACLLGSFNLVKYIFKDGAGRYAFDWDQYREDIPQVVRAMDNVVDRAIY 360

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + K+     R +GLG+ G  +A   L   Y SP  +    E ++ +   +  AS  +
Sbjct: 361 PLPQQKQEAKDKRRMGLGITGLANAAEALGHEYGSPAFLAFEAEVLDTLRDESYLASAHI 420

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G++  F    + QG F I +  L  +VRD +A                   G+RNS
Sbjct: 421 AKVKGSFPKFDKDKYLQGQF-IKT--LREDVRDAIA-----------------KYGIRNS 460

Query: 762 NCMAIAPTATIANICG--VSQSIDPSY 786
           +  +IAPT TI ++C   VS  I+P +
Sbjct: 461 HLTSIAPTGTI-SLCADNVSSGIEPVF 486


>gi|284032582|ref|YP_003382513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
 gi|283811875|gb|ADB33714.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
          Length = 960

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 131/577 (22%), Positives = 242/577 (41%), Gaps = 41/577 (7%)

Query: 350 HFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R
Sbjct: 144 YFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILNWYKEEGLIFKGGSGAGLNLSRIR 203

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRK 467
                +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ + 
Sbjct: 204 SSKELLQSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKM 263

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
              D  R   D   A +  DL  + +T    QNA  ++   DE     +  G EF +   
Sbjct: 264 REEDKIRVLRD---AGYDMDLGGRDITSVQYQNANNSVRVTDEFMRAVEEKG-EFGLRA- 318

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R +  V   + A  L+ K+    +    P + + D  N        G + +SN
Sbjct: 319 -------RLDGSVIETVDARELFDKISHAAWACADPGLQYDDTINDWHTTPETGRITASN 371

Query: 584 LCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCH 641
            C+E + L++SS     CNL S+NL+    ++  FD +K    +   +  +D  I     
Sbjct: 372 PCSEYMHLDNSS-----CNLASLNLMKFLRDDDLFDSEKFVKAVELIITAMDISICFADF 426

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             E   ++   +R +G+G     + L      Y S     +A      ++  +   S EL
Sbjct: 427 PTEAIGETTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAEL 486

Query: 702 AQERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           A   G Y  F+ +      +  +     D+I  + E+  ++   + +   W ++      
Sbjct: 487 AGIVGPYDGFERNKDAHTRVMRKHAAANDAIRTIHEIDKDV--QKAATAAWQDVLTLGAK 544

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQR 813
            G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN  +   L+  
Sbjct: 545 NGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTVPRALRLH 604

Query: 814 DLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWID 868
              +E + + ++Y    G + +   +  +  +I  TA     I PM  +   +  Q ++ 
Sbjct: 605 GYTEETIEAIVEYISEHGHVVDAPGLKPEHYEIFDTAMGERAIKPMGHVRMMAAAQPFLS 664

Query: 869 QAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            A S  + L E +  +++  +Y Q W +GLK     R
Sbjct: 665 GAISKTVNLPETATVEEIADVYFQGWKLGLKALAVYR 701


>gi|282858613|ref|ZP_06267775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
 gi|282588617|gb|EFB93760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
          Length = 862

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 148/683 (21%), Positives = 279/683 (40%), Gaps = 111/683 (16%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLL 346
           F  + L  ++  ++Y +  +   I  + P+    R+A  +A   K+      A E + LL
Sbjct: 20  FKGDELAARVWVNKYAMKDSFGNIYEQSPEDMHWRIANEVARIEKKYANPMGAAEVFELL 79

Query: 347 SSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPD--DLYG-IFGALQENAMLAKYSGGL 400
             F ++    + +   G  H    LS+CF+  +    D YG I    +E   L K  GG+
Sbjct: 80  DHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLEGNADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D++ +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+   +   H D E
Sbjct: 140 GHDFSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +  +                     
Sbjct: 199 AFIDAKMEEG----KVTGANVSVKITDEFMEAAVNDKPYI-------------------- 234

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV- 578
             + Y   ADR      +++SA  +W K++   +++    + F D     S P  +  + 
Sbjct: 235 --QQYPINADRPSFT--KEVSAKQIWEKIVHNAWKSAELGVLFWDTILKESIPDCYADLG 290

Query: 579 --VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L S+NL ++  +      +FD++  A  ++ A R+
Sbjct: 291 FQTVSTNPCGEIPLCPYDS----CRLLSLNLYSYVIDPFTDHARFDFETFAKHVQLAQRI 346

Query: 632 LDNVIDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D+++D+                          H  EK K  +   R  G+G+      +
Sbjct: 347 MDDIVDLEMEKIDLILNKIKSDPQSDEVKGAEYHLWEKIKDKSGKGRRTGVGITAEGDMI 406

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + Y + EA   + E  + ++ +A  +SV +A+ERG +  F         F +   G
Sbjct: 407 AAMGLRYGTQEATNFSVEVHKTLALNAYRSSVAMAKERGCFEIFDAKREQNNPFILRLKG 466

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             A++  ++                    G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 467 EDAQLYADMV-----------------EYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFM 509

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY------------HDGSIGNI 834
            +Y  +  ++ +   V+   V+E+   D ++E ++   K+               S   I
Sbjct: 510 PVYKRRRKVNPNEPDVHVDFVDEVG--DSFEEYIVYHSKFLTWMQVNGIDAAKKYSQDEI 567

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           + +        ATA ++D +  +      QKW+D + S+ + L     + L + +Y +AW
Sbjct: 568 DALVKQSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNNVDETLVNKLYIEAW 627

Query: 894 LMGLK--TTYYLRSRSATSVEKS 914
             G K  T Y   SRS   +  S
Sbjct: 628 RSGCKGCTIYRDGSRSGVMISVS 650


>gi|239944781|ref|ZP_04696718.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291448244|ref|ZP_06587634.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351191|gb|EFE78095.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
          Length = 965

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 141/590 (23%), Positives = 243/590 (41%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 250 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 295

Query: 517 EFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N      
Sbjct: 296 EFMKAVESGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCP 355

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTA 628
             G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   
Sbjct: 356 ESGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRL 744
            ++  +   S ELA   G Y  + + +   Q V     D+      + D +  +   +  
Sbjct: 471 LMTGTSYKRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHIDDLDSPVWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 AWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V ++ +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 590 VNGTVPQVLRRLGYQPEQIEAIVAHIAENGNVVDAP-GLKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|290956950|ref|YP_003488132.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
 gi|260646476|emb|CBG69573.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
          Length = 965

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 145/590 (24%), Positives = 248/590 (42%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQV-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F+  +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 250 DFIATKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 295

Query: 517 EFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A EN      R  +  +V  K+ A AL+RK+    +    P I +    N      
Sbjct: 296 EFMTAVENGTEFGLRARMTGEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCP 355

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTA 628
             G + +SN C+E + L+++S     CNL S+NL+    ++      F+ ++ A  +   
Sbjct: 356 ESGRITASNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGRQSFEVERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRL 744
            ++  A   S ELA   G Y  + + +     V    S      VR D+L   +   +  
Sbjct: 471 LMTGTAYKRSAELAAVVGPYDGYARNADAHNRVMKQHSDANGTAVRMDDLDSPVWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +  +  G RNS    +APT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  + E  I  +  H    GN+   P  LK+ H   F+       I PM 
Sbjct: 590 VNGTVPQALRRLGYQEEQIEAIVAHIADHGNVIDAP-GLKQEHYEVFDCAMGERAISPMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + + +  + ++++ IY +AW +G+K     R
Sbjct: 649 HVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGVKALAIYR 698


>gi|72162548|ref|YP_290205.1| vitamin B12-dependent ribonucleotide reductase [Thermobifida fusca
           YX]
 gi|71916280|gb|AAZ56182.1| ribonucleotide reductase large subunit [Thermobifida fusca YX]
          Length = 934

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 138/586 (23%), Positives = 244/586 (41%), Gaps = 62/586 (10%)

Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 136 FSFNSPVWFNVGTSSKAQVSACFILSVDDTMESILDWYKEEGLIFKGGSGAGVNLSRIRS 195

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ +  
Sbjct: 196 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIECKAR 254

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              + R+   +  A +  DL    +     QNA  ++     VSD       +F  A EN
Sbjct: 255 ---EERKIRVLRDAGFDVDLGGADIISVQYQNANNSV----RVSD-------KFMRAVEN 300

Query: 525 YER--QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E      R   +V  K+ A  L+RKM    +E   P I + D  N        G + +S
Sbjct: 301 DEDFDLIARTTGEVISKVRARDLFRKMAQAAWECADPGIQYDDTINDWHTTPESGRITAS 360

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL SINL+     +  F  ++        +  +D  I    
Sbjct: 361 NPCSEYVHLDNSS-----CNLASINLMKFLDEDGSFRVEEFERLTELVITAMDISICFAD 415

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L      Y S     +A      ++  A   S E
Sbjct: 416 FPTEKIAETTRAYRQLGIGYTNLGALLMATGHAYDSDGGRSVAAAITSLMTAAAYRRSAE 475

Query: 701 LAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           LA   GAY  +            K +  +  + P+  +        E  ++  +   W E
Sbjct: 476 LAGVVGAYEGYAKNAEAHKRVMRKHAAANDALRPVGQL--------EKPIHDAATRAWKE 527

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
             +  +  G RN+    +APT TI+ +    +  I+P +  + +K  +  G   +VN  +
Sbjct: 528 CLELGERHGWRNAQASLLAPTGTISFMLDCDTTGIEPDFSLVKIKKLVGGGSMKIVNQGI 587

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L+    ++E  I  +  +    G++   P +L+  H   F+       I PM  +E 
Sbjct: 588 PRALRTLG-YNEDQIQAIVDYVAEHGHVVDAP-ELRPEHYEVFDCATGKRYIRPMGHVEM 645

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +  Q ++  A S  + L +E + +  + +Y + W  GLK     R
Sbjct: 646 MAAVQPFLSGAISKTVNLPEEATVEDFERLYFEGWKKGLKALAVYR 691


>gi|255037291|ref|YP_003087912.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
 gi|254950047|gb|ACT94747.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
          Length = 850

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 151/654 (23%), Positives = 266/654 (40%), Gaps = 109/654 (16%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFL---TTVPDDLYGIFGALQENAM 392
            E ++L+  F ++    +   +G  +P     LS+CF+       D   GI    QE   
Sbjct: 79  AEIFDLIKDFKYIIPQGSPM-TGIGNPYQIASLSNCFVIGNNGESDSYGGIMKIDQEQVQ 137

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +
Sbjct: 138 LMKRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERFSNSTREVAQDG-RRGALMLSV 196

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D E F+D +   G    +    N +  I D FM+ V  +AG T            
Sbjct: 197 SIKHPDSESFIDAKMEQG----KVTGANVSVRIDDEFMQAV--DAGTT------------ 238

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS- 571
            Y +++ I         D         I A ALW+K++   +++  P I F D     S 
Sbjct: 239 -YRQQYPIQSHTPTHIKD---------IDATALWKKIVHNAWQSAEPGILFWDTIIRESV 288

Query: 572 PQQHVGVVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
           P  +  + +   S+N C EI L +       C L +INL ++  +      +F++D    
Sbjct: 289 PDCYADLGYQTISTNPCGEIPLCAYDS----CRLLAINLFSYVEDPFTDKAKFNWDLFKK 344

Query: 624 TIRTAVRVLDNVIDINCHTIEK-------------------------AKKSNHTHRAIGL 658
            I  A R++D++ID+    I+                            K+N   R  G+
Sbjct: 345 HIAAAQRMMDDIIDLELEKIDAILQKIDEDPEDAEVKRVERNLWLNIQTKANEGRRT-GI 403

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+      L  L + Y S E    A E  + ++  A   SV  A+ERGA++ F       
Sbjct: 404 GITAEGDMLAALGLRYGSDEGNAFAVEIHKTVALEAYRGSVHTAKERGAFTIFDSEREKN 463

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             F    I  L E          ++L ++ L+      G RN   + IAPT T + +   
Sbjct: 464 NPF----ILRLKEA--------DAQLYYEMLE-----YGRRNIALLTIAPTGTTSLMSQT 506

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--------DG 829
           +  I+P +  +Y  +  ++ +   V    V+E+   D W+E ++   ++         D 
Sbjct: 507 TSGIEPVFLPVYKRRRKVNPNDKDVRVDFVDEVG--DSWEEYVVFHHRFKQWMEVNGLDT 564

Query: 830 SIGNIERIPDDLKK----IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           S    ++  D+L K      AT+ ++D +  ++     Q+W+D + S+ + +     ++L
Sbjct: 565 SKNYAQKDLDELVKKSPYYKATSNDVDYLKKVKMQGAIQQWVDHSISVTINMPNDVTEEL 624

Query: 886 -DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
               Y +AW  G K     R  S + V  S  +  +      P   P     +L
Sbjct: 625 VGECYMEAWKAGCKGVTVYRDGSRSGVLISNTEKKEETQEGAPTPFPTERPQTL 678


>gi|294631833|ref|ZP_06710393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
 gi|292835166|gb|EFF93515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
          Length = 962

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 146/588 (24%), Positives = 251/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 133 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 191

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 192 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 250

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 251 DFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVEQGGK 307

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 308 -FGL------RARMTGE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPES 358

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+    ++      F+ ++ A  +   + 
Sbjct: 359 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGHQSFEVERFAKVVELVIT 413

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 414 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 473

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   Q V    +    A VR D+L   +   +   W
Sbjct: 474 TGTAYKRSAELAAVVGPYDGYARNAQPHQRVMKQHADANAAAVRMDDLDTPVWAAATEAW 533

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RNS    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 534 QDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 592

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK+ H   F+       I PM  +
Sbjct: 593 GTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAP-GLKQEHYEVFDCAMGERAISPMGHV 651

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + +  + ++++ IY +AW +G+K     R
Sbjct: 652 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYR 699


>gi|291302019|ref|YP_003513297.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571239|gb|ADD44204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
          Length = 946

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 143/590 (24%), Positives = 240/590 (40%), Gaps = 52/590 (8%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G +
Sbjct: 137 LLLHQYFSFNSPVWFNVGTPDPQQVSACFILSVDDTVDSILNWYREEGLIFKGGSGAGLN 196

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 197 LSRIRA-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEF 255

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEF 518
           +D +    D  R   D   A +  DL  K +     QNA  ++   DE     +  G   
Sbjct: 256 IDTKAREEDKVRALRD---AGFDMDLGGKDIVSVQYQNANNSVRVTDEFMRAVEAGG--- 309

Query: 519 EIAYENYERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                +Y  +A  D  EI+   ++ A  ++RKM    +E   P I F +  N        
Sbjct: 310 -----DYALRARLDGSEIE---RLDAKTVFRKMAQAAWECADPGIQFDNIINDWHTNPET 361

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDN 634
           G +  SN C+E + +++SS     CNL S+NL+    ++  FD +     +   +  ++ 
Sbjct: 362 GRITGSNPCSEYMHIDNSS-----CNLASLNLMKFLKDDGSFDVELFTKAVEFVITAMEI 416

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I       E   K+   HR +G+G     + L      Y S E   +A      ++  +
Sbjct: 417 SISFADFPTEAITKNTRAHRQLGIGYANLGALLMASGFAYDSDEGRAVAAGITSLMTGVS 476

Query: 695 ISASVELAQERGAYSSFK------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
              S ELA   G Y ++         +  +     D++     +  E+     S   W  
Sbjct: 477 YRRSAELAGVVGPYDAYALNADAHKRVMRKHAAACDNVKTYGVMDREILKAAVSE--WQN 534

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
                   G RNS    IAPT TI  +    +  I+P    +  K  +  G   +VN  +
Sbjct: 535 GNNIGDKNGWRNSQASVIAPTGTIGFMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTV 594

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              LK      E+ I  +  +    G++   P  L+  H + F+       I  M  +  
Sbjct: 595 PRALKTLGYQTES-IEAITEYIAEHGHVVDAP-GLRPEHYSVFDCAMGERSISAMGHVRM 652

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDF--IYRQAWLMGLKTTYYLRSRS 907
            +  Q ++  A S  + + E S    DF  IY ++W +GLK     R  S
Sbjct: 653 MAAAQPFVSGAISKTVNVPE-SATVEDFEEIYFESWKLGLKALAVYRENS 701


>gi|298256075|gb|ADI71316.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Bohle iridovirus]
          Length = 254

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  K    +   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYDEWKETDLVECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|162135089|ref|YP_001595830.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513936|emb|CAO77762.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 580

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 190/447 (42%), Gaps = 63/447 (14%)

Query: 363 TRHPQLSSCFLTTVPDDLY-----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           TR     +C+++   +D +      I     E A   +  GG+G D++ +R  G  I   
Sbjct: 40  TRQVTPYNCYVSGTINDSFVDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIRKL 99

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
              S G I F+ + +     V   G R+GA    +   H D+EEF+   K  G D +   
Sbjct: 100 QSHSSGPISFMHIFDAICKCVASSGHRRGAQMGVMRVDHPDIEEFIHA-KQPGKDVQPLW 158

Query: 478 DMNTANWIPDLFMKR-----VTQNAGWTLFSPDEVSDLHDLY------GKEFEIAYENYE 526
           D+     +P+   K+     + Q    T F+      + D +      G+ F + +E   
Sbjct: 159 DLVAE--LPEGAQKQQLIMSLQQTLKLTGFNVSVA--ITDKFMECVASGEPFPLTFEG-- 212

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   + +R++ A ALW  ++   ++   P + F D  N  +   +   + ++N C 
Sbjct: 213 --------RTYREVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATNPCG 264

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         C LGS NL+ +   +      FD+D+    I   VR +DNV+D   +
Sbjct: 265 EQPL----PPYGACLLGSFNLVKYIYKDGAGCFAFDWDQYREDIPQVVRAMDNVVDRAIY 320

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + K+     R +GLG+ G  +A   L   Y SP  +    E ++ +   +  AS  +
Sbjct: 321 PLPQQKQEAKDKRRMGLGITGLANAAEALGHEYGSPAFLAFEAEVLDTLRDESYLASAHI 380

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G++  F    + QG F I +  L  +VRD +A                   G+RNS
Sbjct: 381 AKVKGSFPKFDKDKYLQGQF-IKT--LREDVRDAIA-----------------KYGIRNS 420

Query: 762 NCMAIAPTATIANICG--VSQSIDPSY 786
           +  +IAPT TI ++C   VS  I+P +
Sbjct: 421 HLTSIAPTGTI-SLCADNVSSGIEPVF 446


>gi|325104223|ref|YP_004273877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
 gi|324973071|gb|ADY52055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
          Length = 854

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 151/684 (22%), Positives = 277/684 (40%), Gaps = 121/684 (17%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  ++  ++Y L  +   +  + P     R+A  +A  E++      E   + L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSSGNLYEKTPDDMHRRIASEIARIESKYPNPLSESDVFELI 85

Query: 347 SSFHFMCSTPTLFNSGTRHP----QLSSCFLTT---VPDDLYGIFGALQENAMLAKYSGG 399
            +F ++    +   +G  +P     LS+CF+       D   GI    QE   L K  GG
Sbjct: 86  KNFKYIIPQGSPM-TGIGNPFQIASLSNCFVIGNDGESDSYGGIMKIDQEQIQLMKRRGG 144

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D 
Sbjct: 145 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIEHPDA 203

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E F+D +   G    +    N +  I D FM+ V +++ +                    
Sbjct: 204 ERFIDAKMEQG----KVTGANVSVRITDAFMQAVEKDSDFV------------------- 240

Query: 520 IAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQQHVG 577
                 +R     E  +F  KI A  LW K++   + +  P I F D   N   P  +  
Sbjct: 241 ------QRYPIGAEKPIFSNKIKAKELWDKIVHNAWRSAEPGILFWDTIINESVPDCYAD 294

Query: 578 VVH---SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           + +   S+N C EI L         C L +INL ++  N       F+++     I  A 
Sbjct: 295 LGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVENPYTKAASFNFELFKKHIGFAQ 350

Query: 630 RVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQS 665
           R++D++ID+    +                           ++     R  G+G+     
Sbjct: 351 RIMDDIIDLELEKVNDILAKIDSDPEEDETKRVEKNLWLNIRRKAEEGRRTGIGITAEGD 410

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y S E +  + +  + I+  A  +SV  A+ERGA+  F         F    
Sbjct: 411 MLAALGLRYGSDEGISFSVDIHKLIAIEAYRSSVTAAKERGAFPIFDAEREKNNPF---- 466

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  LAE          S+L ++ L+      G RN   + IAPT T + +   +  I+P 
Sbjct: 467 IKRLAEA--------DSKLYYEMLE-----YGRRNIALLTIAPTGTTSLMSQTTSGIEPV 513

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           +  +Y  +  ++ +   V    V+E+   D W+E ++    +H G    +E    D+++ 
Sbjct: 514 FMPVYKRRRKVNPNDKNVRIDFVDEVG--DSWEEYVV----FHHGFKTWMETNGFDIERN 567

Query: 845 H----------------ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
           +                AT+ ++D +  +      QKW+D + S+ + + ++ S + +  
Sbjct: 568 YSNEELDELVKQSPYYKATSNDVDYLKKVHMQGAIQKWVDHSISVTINMPNDVSEELVGA 627

Query: 888 IYRQAWLMGLKTTYYLRSRSATSV 911
           +Y +AW  G K     R  S + V
Sbjct: 628 LYMEAWKSGCKGVTVYRDGSRSGV 651


>gi|194333550|ref|YP_002015410.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris aestuarii DSM 271]
 gi|194311368|gb|ACF45763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prosthecochloris aestuarii DSM 271]
          Length = 1156

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 222/552 (40%), Gaps = 98/552 (17%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G  G S 
Sbjct: 178 PQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTNFSNLRSRGEKLSG-GGTSS 236

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRK-------------- 467
           G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF++ +               
Sbjct: 237 GLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIEWKSREEDKVASLVSGSR 296

Query: 468 --------------NTGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                         + G DR     +NT         +P  ++ RV      G+T    D
Sbjct: 297 VCSKFLKAIVDEAVSNGTDRMTNPKLNTLVVNALGRGVPMSYIVRVISLVEQGYTTLDFD 356

Query: 506 EVSDLHD------LYGK----------EFEIAYENYERQA--DRGEIKVFRKISAVALWR 547
           E +  ++      + G+          EF  A EN +     +R   K  R + A  LW 
Sbjct: 357 EYTTHYESEAYQTVSGQNSNNTVRVTNEFMKAVENDDLWVLRERTTGKSARSVRARDLWE 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K++   ++   P + F    N        G ++ SN C+E       ++TA CNL S+NL
Sbjct: 417 KIVMSAWKCADPGLQFDTTINEWHTCPASGRINGSNPCSEYMF---LDDTA-CNLASLNL 472

Query: 608 LAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            AHF +    +   D L    R    VL+  + +     E   + ++  R +GLG     
Sbjct: 473 -AHFLDVEKGEIKVDDLLHATRLWTIVLEISVLMAHFPSEDIARLSYEFRTLGLGFANLG 531

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD------- 717
           + L ++ IPY SP+A+ IA      I+  A  AS E+A + G Y+ F+ +  D       
Sbjct: 532 TILMVMGIPYDSPKALAIAGAISALITGGAYRASAEMAADLGPYARFRENEKDMLRVIRN 591

Query: 718 -----QGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                  +   +   LL + R          + +     WD+   + +  G RN+    I
Sbjct: 592 HRRAAHNLSEDEYENLLVKPRGIDSEYCPGYLFKAVGSVWDDALAKGEKDGFRNAQVSVI 651

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI  +    +  I+P +  +  K    G  F +VN  +   LK+           L
Sbjct: 652 APTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALKR-----------L 700

Query: 825 KYHDGSIGNIER 836
            Y D  I  IE+
Sbjct: 701 GYSDTDIDEIEK 712


>gi|182435508|ref|YP_001823227.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776145|ref|ZP_08235410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464024|dbj|BAG18544.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656478|gb|EGE41324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
          Length = 965

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 140/588 (23%), Positives = 241/588 (40%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQV-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 250 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDEFMK 299

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +   R    G+  V  ++ A +L+RKM    +    P I + D  N        
Sbjct: 300 AVETGGKFGLRARMTGD--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   + 
Sbjct: 358 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 413 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 472

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  +   S ELA   G Y  + + +   Q V     D+      V D +  +   +   W
Sbjct: 473 TGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHVDDLDSPVWAAATEAW 532

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 533 QDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVN 591

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M  +
Sbjct: 592 GTVPQALRRLGYQPEQIEAIVAHIAENGNVVDAP-ALKTEHYEVFDCAMGERSISAMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 651 RMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|159037049|ref|YP_001536302.1| vitamin B12-dependent ribonucleotide reductase [Salinispora
           arenicola CNS-205]
 gi|157915884|gb|ABV97311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora arenicola CNS-205]
          Length = 962

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 139/586 (23%), Positives = 239/586 (40%), Gaps = 62/586 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 135 FSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILDWYKEEGLIFKGGSGSGVNLSRIRS 194

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 195 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVVTKAR 253

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL    +     QNA  ++     V+D       EF  A ++
Sbjct: 254 EEDKVRALRD---AGFDMDLGGTDIVSVQYQNANNSV----RVTD-------EFMAAVQS 299

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +   V   I A  L+R +    +E   P + + D  N        G + +S
Sbjct: 300 GGTFDLRGRLDGTVIDTIDAKPLFRTISQAAWECADPGLQYDDTINDWHTCPETGRITAS 359

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NL+    ++  F+  K   ++   +  +D  I    
Sbjct: 360 NPCSEYLHLDNSS-----CNLASLNLMRFLRSDGGFEVAKFVRSVELVITAMDISICFAD 414

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK   +   +R +G+G     + L    +PY+S +   +A      ++  A   S E
Sbjct: 415 FPTEKIGATTRAYRQLGIGYANLGALLMASGLPYSSDQGRSLAAAITSLMTGTAYRRSAE 474

Query: 701 LAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           LA   GAY  +            K +  +  + P  ++          A+ R +   W  
Sbjct: 475 LAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPSGTVA--------TAVQREATRQWSL 526

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
             K     G RNS    +APT TI  +    +  ++P    +  K  +  G   +VN  +
Sbjct: 527 GNKIGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTV 586

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              L+    + E  +  +  H    G++   P  LK  H   F+       I PM  +  
Sbjct: 587 PRALRSLG-YPEEQVEAIVEHIAEHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRM 644

Query: 860 ASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +  Q +I  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 645 MAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYR 690


>gi|309812682|ref|ZP_07706426.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
 gi|308433377|gb|EFP57265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
          Length = 975

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 239/592 (40%), Gaps = 56/592 (9%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G
Sbjct: 127 YALLHQV-FSFNSPVWFNVGTASPQQVSACFILSVEDSMDSILNWYKEEGFIFKGGSGAG 185

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 186 LNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIE 244

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           EF++ +    D  R   D   A +  DL  + +     QNA  ++   DE      + G 
Sbjct: 245 EFIETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVNDEFMQAV-VDGG 300

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R  D GE  V   + A  L+ K+    +E   P + + D  N        
Sbjct: 301 SFGL------RARDTGE--VIETVDARELFDKINKAAWECADPGVQYDDTINAWHTNPET 352

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDN 634
           G + +SN C+E ++L++SS     CNL S+NLL     ++ FD    A  +   +  +D 
Sbjct: 353 GRITASNPCSEYMSLDNSS-----CNLASLNLLKFLKEDDTFDAATFAKVVELVITAMDI 407

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I       E   K+   +R +G+G     + L      Y S     +A      ++  A
Sbjct: 408 SICFADFPTESIGKTTVDYRQLGIGYANLGALLMATGHGYDSDGGRALAASITSLLTGAA 467

Query: 695 ISASVELAQERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
              S E+A   G Y+ +            K    +  +     +G +A     LA     
Sbjct: 468 YKRSAEMAAVVGPYAGYAQNSQAHNRVMRKHRAANDELSSHKDMGAMASDIHALATK--- 524

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFT 800
              W ++    +  G RN+    +APT TI  +    +  I+P +  +  K  +  G   
Sbjct: 525 --AWADVVTLGEKNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQ 582

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDP 853
           +VN  +   LK+    DE  I  +  H    G++   P  LK  H   F+       I P
Sbjct: 583 IVNQTIPRALKKLGYQDE-QIEAIVEHIAEKGHVIDAP-GLKPEHYEIFDCAMGARAISP 640

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           M  +   +  Q ++  A S  + L E  S   +  ++ + W +GLK     R
Sbjct: 641 MGHVRMMAACQPFLSGAISKTVNLPETASVDDIAEVHLEGWKLGLKAIAVYR 692


>gi|256784770|ref|ZP_05523201.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289768657|ref|ZP_06528035.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289698856|gb|EFD66285.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
          Length = 967

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 143/589 (24%), Positives = 243/589 (41%), Gaps = 49/589 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE-VSDLHDLYG 515
           +F+  +    +  R   D   A +  DL    +T    QNA  ++   D  +  + D  G
Sbjct: 250 DFIQTKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQD--G 304

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +F +          R   +V  ++ A AL+RKM    +    P I + D          
Sbjct: 305 GKFGL--------TSRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTIKAWHTCPE 356

Query: 576 VGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
            G ++ SN C+E + L+++S     CNL S+NL+         N  FD ++ +  +   +
Sbjct: 357 SGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFDAERFSKVVELVI 411

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             +D  I       +K  ++    R +G+G     + L      Y S     +A      
Sbjct: 412 TAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSL 471

Query: 690 ISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLP 745
           ++  +   S ELA   G Y  + + +     V    S      VR D+L   +   +   
Sbjct: 472 MTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATEA 531

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           W ++ +  +  G RNS    IAPT TI  A  C  +  ++P    +  K  + G    + 
Sbjct: 532 WQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIV 590

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
           +  V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I  M  
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAP-GLKPEHYEVFDCAMGERSISAMGH 649

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 650 VRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|256825535|ref|YP_003149495.1| vitamin B12-dependent ribonucleotide reductase [Kytococcus
           sedentarius DSM 20547]
 gi|256688928|gb|ACV06730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kytococcus sedentarius DSM 20547]
          Length = 985

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 144/600 (24%), Positives = 248/600 (41%), Gaps = 47/600 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E   + K   G G
Sbjct: 127 YALLHQI-FSFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILNWYREEGFIFKGGSGAG 185

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ 
Sbjct: 186 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIV 244

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           EF+D +    D  R   D   A +  DL    +T    QNA  ++     VSD       
Sbjct: 245 EFIDTKAREEDKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVSD------- 290

Query: 517 EFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A EN E      R    V   ++A  L+ +M    +E   P I + D  N      
Sbjct: 291 EFMRAVENGEEFGLRSRSTGDVIETVNAADLFTRMAKAAWECADPGIQYDDTINHWHTNP 350

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVL 632
             G +++SN C+E ++L++SS     CNL S+NLL    ++  FD ++  +     +  +
Sbjct: 351 ESGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLNDDDTFDVERFQAVTELVITAM 405

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D  I       +   ++    R +G+G     + L      Y S    ++A      ++ 
Sbjct: 406 DISICFADFPTDPIGETTRNFRQLGIGYANLGALLMATGHGYDSEGGRQLAAAITSLLTG 465

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRDELA-MNRTSRLPWDE 748
            +   S ELA   G Y+ +  +            D+   LA + +  A +   +   WD 
Sbjct: 466 ASYKRSAELAAVVGPYNGYARNAEAHNRVMRQHRDANAELAPLHEMDAHIQDAATEAWDA 525

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL 806
           +       G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN  +
Sbjct: 526 VVALGDEHGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTI 585

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIES 859
              LK    +D+A    +  +    G++   P  L + H   F+       I PM  +  
Sbjct: 586 PRALKLLG-YDQAATDAIVEYIAEHGHVVDAP-GLAEEHYEIFDTAMGERAIAPMGHVRM 643

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  Q ++  A S  + L E  + ++++ +Y + W  GLK     R         S+ KG
Sbjct: 644 MAAVQPFLSGAISKTVNLPERATVEEIEEVYLEGWKSGLKALAVYRDNCKVGQPLSSGKG 703


>gi|239991245|ref|ZP_04711909.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 11379]
          Length = 965

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 141/590 (23%), Positives = 242/590 (41%), Gaps = 51/590 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F++ +    +  R   D   A +  DL    +T    QNA  ++     V+D       
Sbjct: 250 NFIETKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV----RVND------- 295

Query: 517 EFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N      
Sbjct: 296 EFMKAVESGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCP 355

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTA 628
             G ++ SN C+E + L+++S     CNL S+NL+         N  F+ ++ A  +   
Sbjct: 356 ESGRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRL 744
            ++  +   S ELA   G Y  + + +   Q V     D+      + D +  +   +  
Sbjct: 471 LMTGTSYKRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHIDDLDSPVWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W ++ +     G RN+    IAPT TI  A  C  +  ++P    +  K  + G    +
Sbjct: 531 AWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQI 589

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
            +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I  M 
Sbjct: 590 VNGTVPQALRRLGYQPEQIEAIVAHIAENGNVVDAP-GLKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            +   +  Q WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYR 698


>gi|298256089|gb|ADI71323.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Rana esculenta virus]
          Length = 254

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  +    +   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|298256091|gb|ADI71324.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Short-finned eel ranavirus]
          Length = 254

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 124/284 (43%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           +PD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   IPDTIEGLVDHTSELRWLSVRGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    + D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSVSHPDLIEFITMRTPTGDVNRKNLNLHHGVNVTDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVTH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L +S + TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLRIRGSNLCNEIHLATSEDRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  +    I   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYDEWRGTDLIECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|296123412|ref|YP_003631190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
 gi|296015752|gb|ADG68991.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
          Length = 1032

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 145/598 (24%), Positives = 242/598 (40%), Gaps = 67/598 (11%)

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           PQ S+CF+ +V D++  I       AML K+  G G D + +R     + G  G   G +
Sbjct: 202 PQASACFIQSVDDNMEDIMRLATSEAMLFKFGSGTGTDLSSIRSAKEKLSG-GGTPSGPL 260

Query: 426 PFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT--A 482
            F++V +  A  V  GGK R+ A    L+ WH D+ EF+  +       R   +     +
Sbjct: 261 SFMRVYDQIAAVVKSGGKTRRAAKMQSLKDWHPDILEFIQCKLKEEKKARVLIESGEYDS 320

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR---GEIKVFRK 539
           N+  + +   + QNA  ++     +SD       EF  AYE  ++          K    
Sbjct: 321 NFNGEAYGSIMYQNANLSV----RLSD-------EFMRAYEENKKWVTHWVTDATKPGPA 369

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A  + R+M    +  G P + F    N      + G +++SN C+E       ++TA 
Sbjct: 370 YEARYVMRQMAEGAWHCGDPGVQFDTIINRWHTCPNDGRINASNPCSEYMF---LDDTA- 425

Query: 600 CNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+NL      + +FD ++  S I   +   + ++D   +   +   ++H +R +GL
Sbjct: 426 CNLASLNLRKFQREDGRFDVERYRSAINIFLTAQEILVDHASYPTPQIAANSHKYRPLGL 485

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---- 714
           G     S L  + IPY S     I       ++  A   S  +A   G +  ++ +    
Sbjct: 486 GYANLGSLLMSMGIPYDSAAGRGICGALTSLLTGQAYLTSSRIAAFAGPFEGYRNNADPM 545

Query: 715 -----LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                +    V  IDS        +EL   + +   WD++    +  G RNS    +APT
Sbjct: 546 LRVMRMHRDAVDRIDS-----SCPEEL--RKAAEEVWDDVVDSGRRFGFRNSQATVLAPT 598

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWD----EAMISD 823
            TIA +    +  I+P    +  K    G    +VN  +   LK    +D    E ++  
Sbjct: 599 GTIAFMMDCDTTGIEPDIALVKYKQLAGGGLMKIVNRTVPLALKTLG-YDSPEVERIVKA 657

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW------IDQAQ-----S 872
           ++ HD     IE    DL   H   F  D  +   S +R  +W      +  AQ     +
Sbjct: 658 IEEHD----TIE-AATDLSPDHLAVF--DCAFKPASGTRSIQWRAHIKMMAAAQPFLSGA 710

Query: 873 LNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           ++  ++ P+   ++ I   Y + W +GLK     R  S  S   +  KG DG     P
Sbjct: 711 ISKTVNMPADSTVEDIEKAYAEGWRLGLKALAVYRDGSKQSQPLNVKKGGDGNKEVAP 768


>gi|298256085|gb|ADI71321.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 254

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  +    +   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYDEWRKTDLVECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|298256087|gb|ADI71322.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Pike-perch iridovirus]
          Length = 254

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  +    +   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|29469209|gb|AAO65322.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces murayamaensis]
          Length = 826

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 138/580 (23%), Positives = 241/580 (41%), Gaps = 46/580 (7%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R 
Sbjct: 1   FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRS 60

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E F++ +  
Sbjct: 61  -SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVK 119

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             +  R   D   A +  DL    +T    QNA  ++   DE       + K  E   + 
Sbjct: 120 EEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSVRVNDE-------FMKAVETGGKF 169

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R    G+  V  ++ A +L+RKM    +    P I + D  N        G ++ SN 
Sbjct: 170 GLRARMTGD--VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNP 227

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDI 638
           C+E + L+++S     CNL S+NL+    ++      F+ ++ A  +   +  +D  I  
Sbjct: 228 CSEYMHLDNTS-----CNLASLNLMKFLKDDGEGHQAFEVERFAKVVELVITAMDISICF 282

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                +K  ++    R +G+G     + L      Y S     +A      ++  +   S
Sbjct: 283 ADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRS 342

Query: 699 VELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVR-DEL--AMNRTSRLPWDELKKRVK 754
            ELA   G Y  + + +   Q V    +      VR D+L   +   +   W ++ +  +
Sbjct: 343 AELAAVVGPYDGYARNAAPHQRVMKQHADENTKAVRMDDLDSPIWAAATEAWQDVVRLGE 402

Query: 755 TIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G RN+    IAPT TI  A  C  +  ++P    +  K  + G    + +  V +  +
Sbjct: 403 KNGFRNAQASVIAPTGTIGLAMSCDTT-GLEPDLALVKFKKLVGGGSMQIVNGTVPQALR 461

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
           R  +    I  +  H    GN+   P  LK  H   F+       I  M  +   +  Q 
Sbjct: 462 RLGYQPEQIEAIVAHIAEHGNVIDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQP 520

Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           WI  A S  + L E +  + ++ +Y +AW MG+K     R
Sbjct: 521 WISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYR 560


>gi|87306454|ref|ZP_01088601.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
 gi|87290633|gb|EAQ82520.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
          Length = 1002

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 141/591 (23%), Positives = 232/591 (39%), Gaps = 44/591 (7%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+  V DD+  I       AML KY  G G D + +R     + G  GK  G 
Sbjct: 174 YPQASACFIQGVQDDMQSIMSLAAAEAMLFKYGSGSGTDLSTLRSRHEVLSG-GGKPSGP 232

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR--THDMNT 481
           + F++V +  A  V  GGK R+ A    L+  H D+ +F+  +       R    H    
Sbjct: 233 LSFMRVYDQVAGVVKSGGKTRRAAKMQSLKIEHPDILDFIQCKAKEEAKARILIEHGGYD 292

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDL--HDLYGKEFEIAYENYERQADRGEIKVFRK 539
           A++  + +   + QNA  ++   D   +    D   K   I   + E            +
Sbjct: 293 ADFNGEAYNSILFQNANLSVRVSDPFMEAVEQDQPWKTHWITKPDNEGP----------Q 342

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A  L ++M    ++ G P + +    N        G +++SN C+E      S     
Sbjct: 343 YPARELLQQMAESAWQCGDPGVQYDTTINAWHTCPQAGRINASNPCSEYMFLDDS----A 398

Query: 600 CNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+NL+    A+  FD  + A+  R      + ++D   +      +++H  R +GL
Sbjct: 399 CNLASLNLMRFRAADGTFDASRFAAACRLLFLAQEILVDHAGYPTATIAENSHRFRPLGL 458

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G     S L    +PY S  A          +   A+  S E+A  RGA++ F  +  D 
Sbjct: 459 GYTNLGSLLMASGLPYDSDSARGTCAVITAILHGAALRTSSEIAASRGAFAGFAENREDM 518

Query: 719 GVFPIDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                     L EV++  A +++ +R  W +++   +  G RN+    +APT TI+    
Sbjct: 519 LTVIDKHAAALGEVKNAPANLSQFARELWGQVQIAGQRDGFRNAQATVLAPTGTISFFMD 578

Query: 778 V-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             +  I+P       K     G   +VN  +   L     +    I  +  + G  G++ 
Sbjct: 579 CDTTGIEPELALSKTKRLAGGGSLQIVNQTVKLGLAALG-YSPTQIDAIADYLGRTGSLT 637

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ-----------SLNLYLDEPSGKK 884
             P DL++     F  D  +  E   R   W    Q           +++  ++ P    
Sbjct: 638 GAP-DLRESDLPTF--DCAFPAEPGGRAISWQAHVQMMAAAQPFLSGAISKTVNMPQEAT 694

Query: 885 LDFI---YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            D I   YR  W +GLK+    R  S  S   S   G D   +A   + PN
Sbjct: 695 PDDIAEAYRWGWKLGLKSLSIYRDNSKQSQPLSA--GDDKPSSAAHASQPN 743


>gi|262198687|ref|YP_003269896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
 gi|262082034|gb|ACY18003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
          Length = 963

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 140/623 (22%), Positives = 241/623 (38%), Gaps = 84/623 (13%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  +LL +     ++P  FN G    PQ S+CF+ +V D +  I    +   ML KY  G
Sbjct: 138 ELVHLLVNQKMAFNSPVWFNVGVETEPQCSACFINSVDDSMSSILTLARTEGMLFKYGSG 197

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G++ + +R    ++HG  G + G + F++  +  A A+  GGK R+ A    L+  H D
Sbjct: 198 TGSNLSSLRSSAENLHG-GGTASGPVSFMRGFDAFAGAIKSGGKTRRAAKMVILDAEHPD 256

Query: 459 VEEFLDLR---------------------KNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           + +F++ +                          D     + N +  + D FM+ V  ++
Sbjct: 257 IVDFVECKAKEEQKAWALIDAGYDGGFNEPGGAYDSVNYQNANHSVRVSDSFMQAVVDDS 316

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WT  +  +  D+H +  +E                           L RK+       G
Sbjct: 317 SWTTHAVLDGRDIHTMPARE---------------------------LMRKIADAAHLCG 349

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-HFANNQF 616
            P + F    N  +P      +++SN C+E      S     CNL S+NL      +  F
Sbjct: 350 DPGMQFDSTINDWNPCIGTARINASNPCSEYMFLDDS----ACNLASLNLRRFQSEDGNF 405

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +     I      ++ ++D   +   K  +++H  R +GLG     + L    +PY S
Sbjct: 406 DVEAYKHAIEITTLAMEIIVDNASYPTPKIGENSHRFRPLGLGYANLGALLMSRGLPYDS 465

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-----GLLAE 731
                 A      +   A   S  +A +  A   F G  +D+   P   +       +A+
Sbjct: 466 EPGRAYAAALTAILCGQAYRTSARIAAD--ATGPFAG--YDENREPFLRVMNKHRKAVAD 521

Query: 732 VRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
           +   L    +   +R  W+++ +  +  G RN+    +APT TIA +    +  ++P   
Sbjct: 522 IDAALVPYDLMEAARGAWNDVVELGEKHGFRNAQTTVLAPTGTIAFLMDCDTTGVEPDIA 581

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  K  + G    + +  V E  +R  + E  +  +  H  +  +IE     LK+ H  
Sbjct: 582 LVKYKRLVGGGMLKMVNQTVPEALRRLGYSEQQLEGIINHIDTQESIEGT-SVLKEEHLP 640

Query: 848 AFE-----------IDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWL 894
            F+           I  M  I   S  Q ++  A  +++NL  D   G   D  Y QAW 
Sbjct: 641 VFDCAFRSPSGTRSIHYMGHIRMMSAVQPFLSGAISKTVNLPSDCTVGDIED-AYLQAWK 699

Query: 895 MGLKTTYYLRSRSATSVEKSTLK 917
           +GLK     R     +   ST K
Sbjct: 700 LGLKAIAVYRDGCKRTQPLSTSK 722


>gi|298256077|gb|ADI71317.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Cod iridovirus/15/04.11.92/DNK]
          Length = 254

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             ++D  +    +   V +LDNVI       E   ++ HT RA+
Sbjct: 204 -ERYDEWRKTDLVECLVEMLDNVIQT--FVDEAPLRTPHTARAV 244


>gi|300697572|ref|YP_003748233.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
 gi|299074296|emb|CBJ53843.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
          Length = 611

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 152/644 (23%), Positives = 260/644 (40%), Gaps = 100/644 (15%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FY-NLLSS 348
           A   +   +L +RY      +R ++    F R A  L+  E    +  +   FY N+L  
Sbjct: 14  ALPSISAAVLANRYLAPGETTRRDV----FKRAARALSGAEAPDRRGRIARLFYANMLRG 69

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFG-------ALQENAMLAKYSGGL 400
              + +   + N+G  R   + +CF+  +     G          AL +        GG+
Sbjct: 70  A--IGAGRIMANAGRARDVTMVNCFVHPIGSGASGAVATVADVDRALADARTTLLMGGGV 127

Query: 401 GNDWTPV--RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G D++PV  R   A   G +  + GV   +   +     +     R GA  A L   H D
Sbjct: 128 GYDFSPVAPRDANADGAGQDNNAGGVCASIDRFDAACATLPFADTRGGAQMAVLRCDHPD 187

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+  ++     RRR    N +  I + FM+ V  +A W L            +G   
Sbjct: 188 LLDFVMAKRG----RRRWSTFNVSVAITNAFMQAVAGDAPWML-----------RHG--- 229

Query: 519 EIAYENYERQADRGEIKV-----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             A    +R AD     V     +  + A  LW+ ++    ++  P + F D  N  +  
Sbjct: 230 --ARPGAQRLADGAHRLVDGDWCYATLPARRLWQTLVQCARDSAEPGLLFIDTINAANAL 287

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHF-----ANNQFDYDKLASTIR 626
             +  + ++N C E  L         C LG I+L  L H         +FD+  LA   R
Sbjct: 288 ASIETIAATNPCGEQPLPPWGS----CVLGPIDLSRLVHCPFGVGGAPRFDFAGLAERAR 343

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             VR+LDN ID+    + +      T R IG+G+ G   AL ++ + Y +P A  +A   
Sbjct: 344 VQVRMLDNAIDLTRWPLPEHMHEARTKRRIGVGVTGLADALAMMCLSYGTPAARHLATRI 403

Query: 687 MEFISFHAISASVELAQERGAYSSFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            + +   A +AS  LA ERGAY +F  + +   G F   +  L   VRD +A++      
Sbjct: 404 AQCLRDQAYAASSALAAERGAYPAFDAARILGAGSF---ASRLPGAVRDAIALH------ 454

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                      G+RNS+ ++ APT ++    A+ C  S  I+P+Y  +Y++    G    
Sbjct: 455 -----------GLRNSHLLSFAPTGSVSLAFADNC--SSGIEPAYDWVYLRRLRVG-HGA 500

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
             ++ +     R      +   L+         +R P     + A   ++DP   I   +
Sbjct: 501 PRAYRIENRAYR------LFRSLRG--------DRAPQPAYFVKAV--DVDPAEHIAMVA 544

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             Q ++D + S  + +  + +  ++D ++ QAW  GLK     R
Sbjct: 545 ALQPFVDASISKTVIVPPDITADRVDALFFQAWRTGLKGITIFR 588


>gi|283778372|ref|YP_003369127.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
 gi|283436825|gb|ADB15267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
          Length = 1041

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 134/575 (23%), Positives = 236/575 (41%), Gaps = 53/575 (9%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+ +V D++  I       AML K+  G G D + +R     + G  GK  G 
Sbjct: 189 YPQGSACFIQSVDDNMEAIMRLATSEAMLFKFGSGTGTDLSTLRSHREKLSG-GGKPSGP 247

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM---- 479
           + F++V +  A  V  GGK R+ A    L+ WH D+ EF++ +     + R+ H +    
Sbjct: 248 LSFMRVYDQIAAVVKSGGKTRRAAKMQSLKVWHPDILEFVECKWK---EERKAHVLIEKG 304

Query: 480 -NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
              AN+  + +   + QNA  ++   DE    H+   K  + A       +  G +    
Sbjct: 305 GYEANFNGEAYSSILFQNANLSVRLTDEFMQAHE---KNEKWATHWITDASKEGPV---- 357

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  L  +M    ++ G P + +    N      + G +++SN C+E       ++TA
Sbjct: 358 -YEARWLLNRMAECAWQCGDPGVQYDTTINKWHTCPNSGRINASNPCSEYMF---LDDTA 413

Query: 599 VCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            CNL SINL+    A+  F+ D+  +  R      + ++D   +  E+  +++H  R +G
Sbjct: 414 -CNLSSINLMKFREADGSFNVDRFKTACRLFFIAQEILVDHASYPTEQIARNSHAFRPLG 472

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--- 714
           LG     S +    +PY S  A  +       +   A  AS E+A   G +  ++ +   
Sbjct: 473 LGYSNLGSLIMSNGLPYDSEAAYGLCGSVTALLHGAANLASAEMAAVVGPFEGYEANREP 532

Query: 715 ------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                 +    V  I+  G          +   +R  WD++    +  G RN+    +AP
Sbjct: 533 FLRVMQMHRDAVEDINPAG-------PADLQEAARATWDQVLALGRRTGFRNAQATVLAP 585

Query: 769 TATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T TI+ +    +  I+P    + Y +    G   +VN  +   L +    D  +   LKY
Sbjct: 586 TGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNGTVPMALGKLGYDDPQIKGILKY 645

Query: 827 --HDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQA--QSLNL 875
              + +I     + D+   +   AF+       I+    I   +  Q ++  A  +++N+
Sbjct: 646 VNENDTIEGAPELADEHLAVFDCAFKPANGVRSINWRAHIRMMAAAQPFLSGAISKTVNM 705

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             D       D  Y   W +GLK     R  S  S
Sbjct: 706 PTDVTPADIGD-AYTWGWQLGLKALAIYRDGSKQS 739


>gi|145641093|ref|ZP_01796674.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274254|gb|EDK14119.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 354

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 166/385 (43%), Gaps = 61/385 (15%)

Query: 556 TGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL--------NSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  V  SNLC EI L        N  + E A+C L + N
Sbjct: 7   TGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 66

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L     N     D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   
Sbjct: 67  L-GKIEN----LDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYY 121

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+ 
Sbjct: 122 LAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTY 181

Query: 727 GLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                 +D  A+ +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 182 K-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 236

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             ++ +K++  G    V     N +   + LWD                   IP +   +
Sbjct: 237 RGHVSIKASKDGILKQVVPEYENLMDNYELLWD-------------------IPSNDGYL 277

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----EPSGKKLDFIYRQ---AWLMGL 897
           H                  QK++DQA S N   D    E     +  + +    A+  GL
Sbjct: 278 HLVGI-------------MQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGL 324

Query: 898 KTTYYLRSR-SATSVEKSTLKGVDG 921
           KT YY  +R  A  V++    G  G
Sbjct: 325 KTLYYQNTRDGAEDVQEDLDDGCAG 349


>gi|313837155|gb|EFS74869.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA2]
 gi|314927822|gb|EFS91653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL044PA1]
 gi|314971928|gb|EFT16026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA3]
          Length = 949

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 139/620 (22%), Positives = 241/620 (38%), Gaps = 71/620 (11%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 127 LLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 186

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 187 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 245

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 246 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMTAVEQGQPFGLTS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 306 RTEPG--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 339

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     ++ FD  + 
Sbjct: 340 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDEDDHFDVGRF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   ++    R +G+G     + L  L + Y S     
Sbjct: 395 TKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELA 737
           +A      ++  +   S ELA   G Y+ +  +        I       +V     ++  
Sbjct: 455 LAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIKHRDANRQVHPLHDNDTT 514

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM- 795
           +   ++  WD++ K  +T G RN+    +APT TI  +    +  I+P +  +  K  + 
Sbjct: 515 VLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVG 574

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE----- 850
            G   +VN  +   LK      E     + Y   + G++   P  L + H   F+     
Sbjct: 575 GGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDN-GSVVGAP-VLDEAHYEVFDCAMGT 632

Query: 851 --IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R   
Sbjct: 633 RFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNC 692

Query: 908 ATSVEKSTLKGVDGKLNAVP 927
                 S +K  +    A P
Sbjct: 693 KVGQPLSEVKKTEEDEKAEP 712


>gi|308044273|ref|NP_001183684.1| hypothetical protein LOC100502278 [Zea mays]
 gi|238013844|gb|ACR37957.1| unknown [Zea mays]
          Length = 195

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y 
Sbjct: 2   PTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYD 61

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++ +  KL  
Sbjct: 62  DGSVQKIAEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTS 121

Query: 888 IYRQAWLMGLKT-TYYLRSRSAT-----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           ++  AW  GLKT  YYLR+R+A      +V+ + LK     +N    T+ +       + 
Sbjct: 122 LHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTTLLKENGNGMNDGKPTEEDVEAKMAQMV 181

Query: 942 SSCTSDTECEVC 953
            S  +  EC  C
Sbjct: 182 CSFNNREECLAC 193


>gi|328907286|gb|EGG27052.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium sp. P08]
          Length = 974

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 139/620 (22%), Positives = 241/620 (38%), Gaps = 71/620 (11%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G +
Sbjct: 152 LLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILNWYREEGFIFKGGSGAGLN 211

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF
Sbjct: 212 ISRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEF 270

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    D  R   D                    N +  + D FM  V Q   + L S
Sbjct: 271 IETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVSDAFMTAVEQGQPFGLTS 330

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E                            KV   + A  L+ K+    +E   P + +
Sbjct: 331 RTEPG--------------------------KVLDTVDAKELFGKIAQAAWECADPGLQY 364

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
            D  N      + G +++SN C+E ++L++SS     CNL S+NLL     ++ FD  + 
Sbjct: 365 DDTINAWHTTPNSGRINASNPCSEYMSLDNSS-----CNLASLNLLKFLDEDDHFDVGRF 419

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E   ++    R +G+G     + L  L + Y S     
Sbjct: 420 TKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLGALLMALGLGYDSDGGRA 479

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELA 737
           +A      ++  +   S ELA   G Y+ +  +        I       +V     ++  
Sbjct: 480 LAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIKHRDANRQVHPLHDNDTT 539

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM- 795
           +   ++  WD++ K  +T G RN+    +APT TI  +    +  I+P +  +  K  + 
Sbjct: 540 VLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVG 599

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE----- 850
            G   +VN  +   LK      E     + Y   + G++   P  L + H   F+     
Sbjct: 600 GGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDN-GSVVGAP-VLDEAHYEVFDCAMGT 657

Query: 851 --IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R   
Sbjct: 658 RFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNC 717

Query: 908 ATSVEKSTLKGVDGKLNAVP 927
                 S +K  +    A P
Sbjct: 718 KVGQPLSEVKKTEEDEKAEP 737


>gi|298256081|gb|ADI71319.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 254

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 125/284 (44%), Gaps = 45/284 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             +++  +    +   V +LDNVI       E   K+ HT RA+
Sbjct: 204 -ERYNEWRETDLVECLVEMLDNVIQT--FVDEAPLKTPHTARAV 244


>gi|269941514|emb|CBI49912.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 1091

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 15/311 (4%)

Query: 285 LKYERDFAFEY---LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339
           L Y   F FE+   +     YD Y L        +E  +   + V++ LA  + +  KR 
Sbjct: 75  LDYAYSFGFEFQSFMAASKFYDTYALKTRDKSQWLEDFEQHNVIVSLYLAGGDVDLAKRY 134

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           ++ + L +      +TPT  N+G +H  +L+SC+L T+ D L  I     + +  +K +G
Sbjct: 135 IKAHTLQT---VQTATPTYLNAGRKHRGELASCYLFTMDDTLNSINFIRSQVSQASKIAG 191

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+  + T +RG GA + G     +G++P  K+        +Q G+R GA  AYL  +H D
Sbjct: 192 GVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGEVSYADQLGQRAGAGAAYLNIFHSD 251

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V E L+ +K   D+  R   ++    +P LF     ++    +F P     + + +GK+ 
Sbjct: 252 VIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAKEDKDLYMFEP---YSIQEEFGKDV 308

Query: 519 ---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
              +I   ++  +    E  +  KI+A  +   +  +  ++G+P+I +KD  N       
Sbjct: 309 ILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKNHALNE 368

Query: 576 VGVVHSSNLCT 586
           +G +  SNLC 
Sbjct: 369 LGEIKMSNLCV 379



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 143/334 (42%), Gaps = 68/334 (20%)

Query: 599  VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE---KAKKSNHTHRA 655
            +CNL S+N++      +     +  +IRT +R L  V   N   IE      K+N  +RA
Sbjct: 788  ICNLASLNMVKSIEEKE-----IEESIRTGMRALTFVA--NNSRIEHLPTVHKANKNNRA 840

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER---------- 705
            +GLG+M F S      I Y S E++++ +     + ++++  S+++A ER          
Sbjct: 841  VGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMMDYYSLDESMKIAVERNDKFYGFDQT 900

Query: 706  ----------GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
                      G Y  +K +   + V PI     + E+   + +   ++  W  L + V  
Sbjct: 901  DYKAKDDKEFGEYF-YKNNRVTKNVEPITP--KIKEIFKGIYI--PTKEDWQRLAREVDK 955

Query: 756  IGMRNSNCMAIAP--TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G+ NS  ++IAP  T +I+ I   S ++ P                     +V+ +++R
Sbjct: 956  NGLYNSYRLSIAPYRTQSISYITNCSSALTP---------------------VVDVVEKR 994

Query: 814  DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               +      + Y           P+ +     TAF+I    +I  A+  QKWIDQ  S 
Sbjct: 995  KYGNSETYYPMPYLS---------PETMWFYSPTAFDIPQEHIINVAAVAQKWIDQGVST 1045

Query: 874  NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             L+++ E    KL  +Y  A   GLK+ YY R++
Sbjct: 1046 ILFVNSEIETNKLARLYAYAHDRGLKSLYYTRNK 1079


>gi|298256079|gb|ADI71318.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European catfish virus]
 gi|298256083|gb|ADI71320.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European sheatfish virus]
          Length = 254

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 127/285 (44%), Gaps = 47/285 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLVEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVTH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N  +    +  G+ +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIMGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAI 656
             ++D  +    +   V +LDNVI      ++ A  K+ HT RA+
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQT---FVDGAPLKTPHTARAV 244


>gi|238584481|ref|XP_002390574.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
 gi|215454140|gb|EEB91504.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
          Length = 260

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 132/260 (50%), Gaps = 36/260 (13%)

Query: 166 VEEACSGLQ-------DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
           +++ C GL        +V+ K+V     + +Y G++  +L+     ++  L  K P+YA 
Sbjct: 23  IDKLCYGLDMNYVNPIEVTQKVV-----QGVYQGVTTVELDNLAAETAAYLTTKHPDYAV 77

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE------EGVKARLLHES 272
           + AR  +  L +E      KK   A    ++ LY      Y+        G+ A+  +E 
Sbjct: 78  LAARIAISNLHKET-----KKNFSAV---IKDLY-----EYVNPKNGRPSGMIAQDTYEI 124

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           + +     L + + Y RDF + + G + L   Y L ING   E PQ   MR A+G+  ++
Sbjct: 125 IQEHKET-LDSAIIYNRDFNYNFFGFKTLERSYLLRINGRVAERPQHMIMRCAVGIHGRD 183

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENA 391
            E   R ++ Y L+S  +F  ++PTLFN+GT H QLSSCFL  + DD + GI+  L+E A
Sbjct: 184 IE---RVLQTYELMSEKYFTHASPTLFNAGTPHAQLSSCFLVAMKDDSIEGIYDTLKECA 240

Query: 392 MLAKYSGGLGNDWTPVRGLG 411
           M++K +GG+G     +R  G
Sbjct: 241 MISKCAGGIGLHIHNIRATG 260


>gi|294998841|gb|ADF58155.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           JG004]
          Length = 581

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 139/564 (24%), Positives = 231/564 (40%), Gaps = 109/564 (19%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F++++       STP L N G R    + SC    + ++LY  +  + E A+L K+S G 
Sbjct: 83  FFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSHGT 142

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T     G  I G  G+SQGV+P ++   +    V QG +R    CAY         
Sbjct: 143 SFSLTNWPSEGDAIRG--GESQGVMPVIRDVINVMEEVAQGSRR--GSCAY--------- 189

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
               +    GD           N I  L+ +  + N GW L          D + K+  +
Sbjct: 190 ---SINPRHGD---------FWNVIDHLYKRTESNNVGWLL---------DDQWCKD--M 226

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV 578
           A ++ E                +  W++M+ +    G  + TF D  N  +  P +  G+
Sbjct: 227 AEKDPE---------------TLKRWKRMMFVKLARGKGYFTFIDKMNRHLAEPFKRAGL 271

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLAS--TIRTAVRVLD 633
            V +SNLC E  L ++   T  C + + NL  +  +  +     ++ S   I   +  +D
Sbjct: 272 KVEASNLCQETVLPANDFYTFSCVILNYNLELYRSWPKHLVFIGQVMSDCNISEYLATMD 331

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V   +   +EK  +     RA+G G++GF + L     P  S +A+        F++  
Sbjct: 332 EVSVQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAM--------FLNNA 383

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                 E A+   ++                    LAEV  E A  R             
Sbjct: 384 IFKGMKEQAEACNSW--------------------LAEVLGEPAGCRG------------ 411

Query: 754 KTIGMRNSNCMAIAPTATIANI-CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             +G RN+  M + PT + A +  G S+ I       + K +  G+F  VN  L+  +++
Sbjct: 412 --LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEIIQE 469

Query: 813 RDL-WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           R L W+E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ Q
Sbjct: 470 RGLDWEEC-ARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQGQ 528

Query: 872 SLNLYL---DEPSGKKLDFIYRQA 892
           S+NLY    D P+   + +I+R A
Sbjct: 529 SINLYFTSNDSPA--YISYIHRLA 550


>gi|269838377|ref|YP_003320605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787640|gb|ACZ39783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
          Length = 1139

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 77/553 (13%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           P   +CF+ +V DDL    GIF  +   A + KY  G G +++ +R  G  + G  G S 
Sbjct: 199 PTPHACFIQSVEDDLVNPGGIFDLVTREARVFKYGSGSGTNFSKIRAEGEPLSG-GGTSS 257

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++ FLK+ +  A A+  GG  R+ A    ++  H D+E F++ +    ++ ++   +  
Sbjct: 258 GLMSFLKIFDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFINWK---AEEEKKVAALIA 314

Query: 482 ANWIPDL----FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           A +  D     +     QN+  ++   DE      L   E+ + +        R + ++ 
Sbjct: 315 AGYSADFNGEAYATVSGQNSNNSVRVTDEFIRAV-LTDGEWHLRW--------RTDGRIA 365

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW ++    ++   P + F    N        G +++SN C+E       ++T
Sbjct: 366 KTVRARDLWHQIAQAAWQCADPGVQFDTTINAWHTCPASGRINASNPCSEYMF---LDDT 422

Query: 598 AVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           A CNL S+NL+  +      FD ++    +R    VL+  + +     E   + ++  R 
Sbjct: 423 A-CNLASLNLMKFYDAERRTFDIERFRHAVRLWTIVLEISVLMAQFPSEAIARKSYEFRT 481

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA------------- 702
           +GLG     S L  + +PY S  A  IA      ++  A +AS E+A             
Sbjct: 482 LGLGYANLGSMLMTMGLPYDSDRARGIAAAVTAIMTGEAYAASAEMASVLGPFPAFAENR 541

Query: 703 ---------QERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKR 752
                      R AY++  G      V P+   GL  A   ++L   + +R  WD     
Sbjct: 542 EHMLRVIRNHRRAAYNAHPGEYEGLSVAPV---GLDPATCPEDLV--QAAREAWDRALAM 596

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    +APT TI  +    +  ++P +  +  K    G  F + N  +   L
Sbjct: 597 GEQYGYRNAQTTLLAPTGTIGLLMDCDTTGVEPDFALVKFKKLAGGGYFKIANQSIAPAL 656

Query: 811 KQRDLWDEAMISDLKYHDGSIG--------------------NIERIPDDLKKIHATAFE 850
           +     +E +   L+Y  G++                      ++R+   L  +    + 
Sbjct: 657 RTLGYTEEQIEDILRYVLGTLSLDNAPHINRASLMEKGLTSEEVDRLEQALPSVFELTYA 716

Query: 851 IDPMWLIESASRR 863
             P  L E A RR
Sbjct: 717 FTPWTLGEEALRR 729


>gi|256375568|ref|YP_003099228.1| vitamin B12-dependent ribonucleotide reductase [Actinosynnema mirum
           DSM 43827]
 gi|255919871|gb|ACU35382.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Actinosynnema mirum DSM 43827]
          Length = 948

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 145/610 (23%), Positives = 242/610 (39%), Gaps = 42/610 (6%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQEN 390
           ET+ E    E   +L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E 
Sbjct: 122 ETDAEVFEHELTWMLLHQVFSFNSPVWFNVGTASPQQVSACFILSVDDTMESILNWYREE 181

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVC 449
            ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A  
Sbjct: 182 GLIFKGGSGAGLNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKM 240

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPD 505
             L+  H DVEEF+  +    D  R   D   A +  DL    +     QNA  ++   D
Sbjct: 241 VVLDVDHPDVEEFIQTKAREEDKIRALRD---AGFDMDLGGSDIVSVQYQNANNSVRVSD 297

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E     +  GKEF +          RG  +V   + A +L+RK+    +E   P I +  
Sbjct: 298 EFMRAFE-GGKEFGLR--------SRGTGEVIETVDAKSLFRKLAQAAWECADPGIQYDG 348

Query: 566 PCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
             N        G + +SN C+E + L++SS     CNL S+NL+    ++  F+ D  A 
Sbjct: 349 TINDWHTTPESGRITASNPCSEYMHLDNSS-----CNLASLNLMKFLGDDGSFNADLFAR 403

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I           ++    R +G+G     + L      Y S     +A
Sbjct: 404 SVELIITAMDISICFADFPTPAIGETTRAFRQLGIGYANLGALLMATGHAYDSEGGRALA 463

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
                 +   +   S ELA   G Y  +  +                E+R   A +  +R
Sbjct: 464 ASITSLMQAVSYRRSAELAGVVGPYDGYARNAESHKRIIRKHASANDEIRTLHANDADTR 523

Query: 744 ----LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SG 797
                 W   ++     G RN+    +APT TI  +    +  I+P    +  K  +  G
Sbjct: 524 SLATAEWQRCQEIGAVNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGG 583

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------- 850
              +VN  +   L       E  +  +  H G  G++   P  LK  H   F+       
Sbjct: 584 SMQIVNQTVPRALSALGYPTE-QVEAIVEHIGEHGHVVDAP-SLKLEHYEVFDCAMGERS 641

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PM  +   +  Q ++  A S  + + E  + ++++ +Y Q W MGLK     R     
Sbjct: 642 ITPMGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEVYYQGWKMGLKALAIYRDNCKV 701

Query: 910 SVEKSTLKGV 919
               S  KG 
Sbjct: 702 GQPLSAGKGA 711


>gi|302557997|ref|ZP_07310339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
 gi|302475615|gb|EFL38708.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
          Length = 964

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 139/588 (23%), Positives = 246/588 (41%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +     QNA  ++   DE     +  GK
Sbjct: 250 DFIETKVKEEEKIRVLRD---AGFDMDLGGDDIASVQYQNANNSVRVNDEFMQAVEQGGK 306

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A AL+R++    +    P I +    N        
Sbjct: 307 -FGL------RARMTGE--VIEEVDAKALFRRLAEAAWACADPGIQYDGVINNWHTCPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVR 630
           G + +SN C+E + L+++S     CNL S+NL+         N  F+ ++    +   + 
Sbjct: 358 GRITASNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGLGNQSFETERFQKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 413 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 472

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   Q V     D+ G    + D +  +   +   W
Sbjct: 473 TGTAYRRSAELAAIVGPYDGYARNADAHQRVMRQHADANGTAVRMDDLDTPVWAAATEAW 532

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RN+    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 533 QDVVRVGEKNGFRNAQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 591

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK+ H   F+       I PM  +
Sbjct: 592 GTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAP-GLKQEHYEVFDCAMGERAISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + +  + ++++ IY +AW +G+K     R
Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGVKALAIYR 698


>gi|239997054|ref|ZP_04717578.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 268

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 125/257 (48%), Gaps = 20/257 (7%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITL------ 590
           ++I A+ L+   +     TG  ++   D CN  SP    V  V  SNLC EI L      
Sbjct: 19  KQIKAMELFSLFMQERASTGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQ 78

Query: 591 --NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
             N  + E A+C L + NL A  + ++F+  +L+     AVR LDN++D   + +  A  
Sbjct: 79  HVNDENGEIALCTLSAFNLGAIKSLDEFE--ELSDL---AVRALDNLLDYQDYPVPAAYN 133

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G++ F   L    + Y+   A  +   + E + ++ + AS  LA+E+GA 
Sbjct: 134 ATMGRRTLGVGVINFAYYLAKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGAC 193

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             F  + + QG+ PIDS       +D +   N      WD L++ +KT G+RNS   A+ 
Sbjct: 194 PKFNETTYSQGIMPIDSYK-----KDLDSVCNEPLHYDWDALREEIKTHGLRNSTLSALM 248

Query: 768 PTATIANICGVSQSIDP 784
           P+ T + I   +  I+P
Sbjct: 249 PSETSSQISNATNGIEP 265


>gi|260576393|ref|ZP_05844384.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259021464|gb|EEW24769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 1222

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 139/575 (24%), Positives = 223/575 (38%), Gaps = 115/575 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGA----VC--------AYLETWHIDVEEFLDL 465
            GKS G++ FLK+ +  A A+  GG  + A    +C        A++    I+ ++   L
Sbjct: 248 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDVDHPDVEAFINWKVIEEQKVASL 307

Query: 466 RKNTGDDRRRTHDMNTA--NW---------------------------IPDLFMKRVTQN 496
              +    ++ +++ TA   W                           IP+ ++ RV Q 
Sbjct: 308 VAGSKMHEQKLNEIFTAIGGWDGSIADATDPAKNEALKAAIRGAKRVMIPETYINRVLQY 367

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYE-----NYERQAD----------------RGEIK 535
           A    FS  E       +  E  I+       N  R  D                R + K
Sbjct: 368 ARQG-FSSIEFPTYDTDWDSEAYISVSGQNSNNSVRVTDAFLQAVKDDADWALIRRTDGK 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + I A  LW ++    +    P I F D  N        G + +SN C+E       +
Sbjct: 427 VSKTIKAKELWDQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +TA CNL S+NLL  FAN QFD +      R     L+  + +     ++  + ++  R 
Sbjct: 484 DTA-CNLASMNLLTFFANGQFDAESYIHACRLWTVTLEISVMMAQFPSKEIAQLSYDFRT 542

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG       L  + + Y S E   +       ++  A + S E+A E GA++ +    
Sbjct: 543 LGLGYANIGGLLMNMGLGYDSAEGRAMCGALTALMTGVAYATSAEMAGELGAFAGY---- 598

Query: 716 WDQGVFPIDSIGLLAEVRDE--LAMNRTS--------------------------RLPWD 747
                   +S  +L  +R+    A  RTS                          +  WD
Sbjct: 599 ------ARNSAHMLRVIRNHRTAAYGRTSGYEALNVAPVPLDQVNCPDQTLVTLAKSAWD 652

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
           E     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 653 EALVLGEKHGFRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQS 712

Query: 806 LVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           +   L++   +  A I+++  H    GSIGN   I
Sbjct: 713 VPAALEKLG-YGSAQIAEIIAHAVGHGSIGNCPGI 746


>gi|328720930|ref|XP_003247166.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 234

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 21/237 (8%)

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ SP++  +  +  E + + A+ AS ELA++ G YSS+K S       PI    + 
Sbjct: 1   MQYPFGSPKSRNLNIQIFETLYYGALEASCELAEKYGTYSSYKES-------PISQGYMW 53

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +   EL         W  LK+++   G+RNS  ++I  TA  A I G + SI+P   N 
Sbjct: 54  NKQPSEL-------WNWPLLKEKIAKYGVRNSLLLSIMTTAKTARILGNNDSIEPYTNNF 106

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y     +G++++ N  LVN+L + +LW+E MI+  +Y  GS+  I RIP  +K+++ T++
Sbjct: 107 YHLRISAGEYSIYNCHLVNDLIKLNLWNEDMINTFRYLKGSVQKIARIPQHIKELYPTSW 166

Query: 850 EIDPMWLIESASRRQ---KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++    ++E A+R +   + I  ++S NL+   P   K+      A   G K   YL
Sbjct: 167 KLPQKIILEMAARERTIHRSISPSRSTNLFFAGPIYGKIS----SAHFFGWKIVSYL 219


>gi|239928523|ref|ZP_04685476.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291436848|ref|ZP_06576238.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291339743|gb|EFE66699.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 966

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 142/588 (24%), Positives = 247/588 (42%), Gaps = 47/588 (7%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 132 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 190

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+E
Sbjct: 191 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIE 249

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           +F++ +    +  R   D   A +  DL    +T    QNA  ++   DE     +  GK
Sbjct: 250 DFIETKVKEEEKIRVLRD---AGFDMDLGGDDITSVQYQNANNSVRVNDEFMQAVEQGGK 306

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F +      R    GE  V  ++ A AL+RK+    +    P I + D  N        
Sbjct: 307 -FGL------RARMTGE--VIEEVDAKALFRKIAEAAWACADPGIQYDDTINNWHTCPES 357

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
           G + +SN C+E + L+++S     CNL S+NL+         N  F+ ++    +   + 
Sbjct: 358 GRITASNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGKGNQSFETERFQKVVELVIT 412

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     ++      +
Sbjct: 413 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALSGAITSLM 472

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   Q V     D+ G    + D +  +   +   W
Sbjct: 473 TGTAYRRSAELAAIVGPYDGYARNADAHQRVMKQHADANGTAVRMDDLDTPVWAAATEAW 532

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++ +  +  G RNS    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 533 QDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 591

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 592 GTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAP-GLKHEHYEVFDCAMGERAISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WI  A S  + + +  + ++++ IY +AW +G+K     R
Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYR 698


>gi|269125830|ref|YP_003299200.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
 gi|268310788|gb|ACY97162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
          Length = 1370

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 162/371 (43%), Gaps = 30/371 (8%)

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT+ P Q+S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 134 FSFNSPVWFNVGTKSPWQVSACFILSVDDTMESILDWYKEEGIIFKGGSGAGLNLSRIRS 193

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 194 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIWTKAR 252

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL  K +T    QNA  ++     VSD       EF  A EN
Sbjct: 253 EEDKIRALRD---AGFDMDLGGKDITSVQYQNANNSV----RVSD-------EFMRAVEN 298

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E    R  +  +V   + A  L+R M    +E   P I + D  N        G + +S
Sbjct: 299 DEEFGLRARLTGEVIETVRARDLFRAMAQAAWECADPGIQYDDTINDWHTNPETGRITAS 358

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E ++L++SS     CNL SINLL     ++ FD  +        +  +D  I    
Sbjct: 359 NPCSEYMSLDNSS-----CNLASINLLKFLREDDTFDITRFVKLTELIITAMDISITFAD 413

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  ++   +R +G+G     + L      Y S     +A      ++  A   S E
Sbjct: 414 FPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSEGGRSLAAAITSLMTATAYRRSAE 473

Query: 701 LAQERGAYSSF 711
           LA   GAY  +
Sbjct: 474 LAGIVGAYDGY 484


>gi|260889746|ref|ZP_05901009.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860352|gb|EEX74852.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLK------YERDFAF-EYLGLQILYDRYFLH 308
           F   +EE +   + ++  +DF  +Y  +++K      Y++ F F  ++     Y  Y L 
Sbjct: 47  FFHNLEEKMGYLIKNDYYIDFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSYALM 106

Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            +     +E  +     V++ LA    EK K   E+  +L +  +  +TPT  NSG  R 
Sbjct: 107 DDTGEKFLERYEDRIATVSLYLAQGNVEKAK---EYALMLINQEYQPATPTFLNSGKKRS 163

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D+L GI      +  L+   GG+  + + VR  G  I G  G++ GV+
Sbjct: 164 GELVSCFLDEMGDNLSGIGYVFDSSMKLSSIGGGVSINLSKVRARGESIKGVEGRASGVL 223

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G+R GA   YL  +H D+ EFLD +K   D++ R   ++    +
Sbjct: 224 PIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIGVIV 283

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           PD FM+   ++     F+P  V   +  Y  E ++  E YE+  D   +K
Sbjct: 284 PDKFMQLAMEDEVCYTFNPHTVFLEYGQYLDEMDMN-EMYEKLVDNPNVK 332


>gi|57867420|ref|YP_189078.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638078|gb|AAW54866.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 969

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 15/311 (4%)

Query: 285 LKYERDFAFEY---LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339
           L Y   F FE+   +     YD Y L        +E  +   + V++ LA  + +  KR 
Sbjct: 75  LDYAYSFGFEFQSFMAASKFYDTYALKTRDKSQWLEDFEQHNVIVSLYLAGGDVDLAKRY 134

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           ++ + L +      +TPT  N+G +   +L+SC+L T+ D L  I     + +  +K +G
Sbjct: 135 IKAHTLQT---VQTATPTYLNAGRKQRGELASCYLFTMDDTLNSINFIRSQVSQASKIAG 191

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+  + T +RG GA + G     +G++P  K+        +Q G+R GA  AYL  +H D
Sbjct: 192 GVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGEVSYADQLGQRAGAGAAYLNIFHSD 251

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V E L+ +K   D+  R   ++    +P LF     ++    +F P     + + +GK+ 
Sbjct: 252 VIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAKEDKDLYMFEP---YSIQEEFGKDV 308

Query: 519 ---EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
              +I   ++  +    E  +  KI+A  +   +  +  ++G+P+I +KD  N       
Sbjct: 309 ILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKNHALNE 368

Query: 576 VGVVHSSNLCT 586
           +G +  SNLC 
Sbjct: 369 LGEIKMSNLCV 379



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 25/188 (13%)

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE---KAKKSNHTHRA 655
           +CNL S+N++      +     +  +IRT +R L  V   N   IE      K+N  +RA
Sbjct: 788 ICNLASLNMVKSIEEKE-----IEESIRTGMRALTFVA--NNSRIEHLPTVHKANKNNRA 840

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--------- 706
           +GLG+M F S      I Y S E++++ +     + ++++  S+++A ER          
Sbjct: 841 VGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMMDYYSLDESMKIAVERNDKFYGFDQT 900

Query: 707 AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRN 760
            Y +  G  + +  +  + +      +  +V++    +   ++  W  L + V   G+ N
Sbjct: 901 DYKAKDGKEFGEYFYKNNRVTKNVEPITPKVKEIFKGIYIPTKEDWQRLAREVDKNGLYN 960

Query: 761 SNCMAIAP 768
           S  ++IAP
Sbjct: 961 SYRLSIAP 968


>gi|258622933|ref|ZP_05717949.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584872|gb|EEW09605.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 381

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 171/391 (43%), Gaps = 60/391 (15%)

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-- 596
           KI+A  L++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI   S + +  
Sbjct: 11  KINARELFQTIAEIQFESGYPYLMFEDTVNRANP--IAGRITMSNLCSEILQVSEASQFN 68

Query: 597 ----------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEK 645
                        CNLGS+N+         D   L  ++  AVR L  V +++   ++  
Sbjct: 69  DDLSYQHLGTDISCNLGSLNIA-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPS 123

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K N    AIGLG M     L    I Y S E V+  +     I+FH + AS ++A+E+
Sbjct: 124 VRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGVDFTNCYFAAIAFHCLRASNQIAREK 183

Query: 706 -GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              +  F+ S +  G +    +         ++  + +  A+   ++  W +LK+ V   
Sbjct: 184 QQTFHDFERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRD 243

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+ N N  A+ PT +I+ I   + SI P    + ++                        
Sbjct: 244 GLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRK----------------------- 280

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E  +  + Y    + N     D+L   +  A+EI P  +I++ +   + +DQ  SL L+
Sbjct: 281 -EGQVGRVYYPAPYMTN-----DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLF 333

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                + + ++     AW  G+KT YY+R R
Sbjct: 334 FPASATTRDINKAQIYAWKKGIKTLYYVRLR 364


>gi|326804461|ref|YP_004327265.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
 gi|290873874|gb|ADD65077.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
          Length = 581

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 131/564 (23%), Positives = 226/564 (40%), Gaps = 109/564 (19%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLS-SCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F++++       STP L N G R    + SC    + ++LY  +  + E A+L K+S G 
Sbjct: 83  FFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSHGT 142

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T     G  I G  G+SQGV+P ++   +    V QG +R    CAY         
Sbjct: 143 SFSLTNWPSEGDAIRG--GESQGVMPVIRDVINVMEEVAQGSRR--GSCAY--------- 189

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
               +    GD           N I  L+ +  + N GW L                   
Sbjct: 190 ---SINPRHGD---------FWNVIDHLYKRTESNNVGWLL------------------- 218

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV 578
             +N+ +     + +  ++      W++M+ +    G  + TF D  N  +  P +  G+
Sbjct: 219 -DDNWCKAMAEKDPETLKR------WKRMMFVKLARGKGYFTFIDKMNRHLAEPFKRAGL 271

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLAS--TIRTAVRVLD 633
            V +SNLC E  L ++   T  C + + NL  +  +  +     ++ S   I   +  +D
Sbjct: 272 KVEASNLCQETVLPANDWYTFSCVILNYNLELYRSWPEHLVFIGQVMSDCNISEYLATMD 331

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V   +   +EK  +     RA+G G++GF + L     P  S +A+ + +   + +   
Sbjct: 332 EVSIQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAMFLNNAIFKGMKEQ 391

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A + +  LA   G     +G                                        
Sbjct: 392 AEACNSWLAAVLGEPEGCRG---------------------------------------- 411

Query: 754 KTIGMRNSNCMAIAPTATIANI-CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             +G RN+  M + PT + A +  G S+ I       + K +  G+F  VN  L+  +++
Sbjct: 412 --LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEIIQE 469

Query: 813 RDL-WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           R L W+E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ Q
Sbjct: 470 RGLDWEEC-ARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQGQ 528

Query: 872 SLNLYL---DEPSGKKLDFIYRQA 892
           S+NLY    D P+   + +I+R A
Sbjct: 529 SINLYFTSNDSPA--YISYIHRLA 550


>gi|312890959|ref|ZP_07750486.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
 gi|311296556|gb|EFQ73698.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
          Length = 1104

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 208/500 (41%), Gaps = 48/500 (9%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S    PQ  +CF+ +V DDL    GI       A + KY  G+G +++ +RG    + G 
Sbjct: 176 SAYERPQPHACFILSVDDDLVNEGGIMDLWVREARIFKYGSGVGTNFSKIRGESEKLSG- 234

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            G S G++ FLK+ +  A A+  GG  R+ A    L+  H ++E F++ +    ++ ++ 
Sbjct: 235 GGYSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPEIESFVNWKV---EEEKKV 291

Query: 477 HDMNTANWIPDL----FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             +  A +  D     +     QN+  ++  P+   +     GK++++          R 
Sbjct: 292 AALIAAGYSSDYEGEAYRTVSGQNSNNSVRIPNSFFNALK-EGKQWDLT--------GRM 342

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V + +SA  LW  +    +    P + +    N        G +++SN C+E     
Sbjct: 343 NGRVIKSVSAQKLWDDIAFAAWACADPGVQYDTTINEWHTCPEGGRINASNPCSEYMF-- 400

Query: 593 SSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL SINL  +F  +   FD      T R    VL+  + +     +   + +
Sbjct: 401 --LDNTACNLASINLAHYFDADTRVFDVKGFEHTCRIWTIVLEISVLMAQFPSKDVAQLS 458

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG     SAL +  IPY S +A  I       ++  A + S E+A+E G +S 
Sbjct: 459 YDYRTLGLGYANLGSALMVNGIPYDSDKARAIGGAITAIMTGTAYATSAEMAREMGTFSK 518

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +                    S  +     I   G+  +   +  ++      WD+  + 
Sbjct: 519 YAENKEHMLRVMRNHRYAAYNSTENYEGLEIAPPGIDQKYCPDYLLSAACN-AWDKAVEM 577

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  + + K +  G F ++N  +   L
Sbjct: 578 GEQYGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLSGGGYFKIINQAVPAAL 637

Query: 811 KQRDLWDEAMISDLKYHDGS 830
           K     +  + + + Y  G+
Sbjct: 638 KNLGYKEHEVTAIINYAKGT 657


>gi|294676999|ref|YP_003577614.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294475819|gb|ADE85207.1| ribonucleoside-diphosphate reductase NrdJ-2
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 1224

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 143/597 (23%), Positives = 231/597 (38%), Gaps = 117/597 (19%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVRDDLVGEGGIMDLWVREARLFKYGSGTGTNFSSLRAEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD------------ 464
            GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+EEF++            
Sbjct: 248 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEEFINWKVIEEQKVASL 307

Query: 465 -----------------LRKNTGDDRRRTHD-MNTA----------NWIPDLFMKRVTQN 496
                            +R   G D  RT   +N A            IP+ ++ RV Q 
Sbjct: 308 VAGSKMHERELNKIFEAIRAFDGSDEGRTDPAVNVALKAAIRSAKKAMIPETYINRVLQY 367

Query: 497 AGWTLFS---PDEVSDL-HDLYGKEFEIAYENYERQAD----------------RGEIKV 536
           A     S   P   +D   D Y         N  R  D                R +  V
Sbjct: 368 ARQGFSSIEFPTYDTDWDSDAYISVSGQNSNNSVRVTDAFLKAVKDDANWELLRRTDGSV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW ++    +    P I F D  N        G +  SN C+E       ++
Sbjct: 428 AKVVKARDLWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TA CNL S+NLL  +   +FD +      R     L+  + +     ++  + ++  R +
Sbjct: 485 TA-CNLASLNLLTFYTGGEFDAEAYVHATRLWTMTLEISVLMAQFPSKEIAQRSYDFRTL 543

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---- 712
           GLG       L  + + Y S E   +       ++  + + S E+A E G +  +     
Sbjct: 544 GLGYANIGGLLMTMGLGYDSDEGRALCGALSAIMTGISYATSAEMAAELGPFPGYAKNRA 603

Query: 713 ---------------GSLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                           S   +G+     P+D    LA   D+  + R +R+ WDE  +  
Sbjct: 604 HMLRVIRNHRTAAHGKSKGYEGLEVPPVPLD----LANCPDDRLL-RLARMAWDEALRLG 658

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+
Sbjct: 659 EEHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALE 718

Query: 812 QRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
               +  A I+++  +    GS+GN   I           P +++KI A   +AF+I
Sbjct: 719 TLG-YGSAQIAEIIAYAVGHGSLGNCPGINPTALIGHGFGPREIEKIEAALPSAFDI 774


>gi|17544914|ref|NP_518316.1| hypothetical protein RSc0195 [Ralstonia solanacearum GMI1000]
 gi|17427204|emb|CAD13723.1| probable ribonucleotide reductase, alpha subunit oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 617

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 189/452 (41%), Gaps = 56/452 (12%)

Query: 358 LFNSGT-RHPQLSSCFLTTVPDDLYGIFGA------LQENAMLAKYSGGLGNDWTPVRGL 410
           + N+G  R   + +CF+  +      + GA      L++  +  +  GG+G D++ V  +
Sbjct: 86  MANAGVDRQATMVNCFVHPIVGPGAQVAGAADIDRALKQAQVTLRMGGGVGYDFSAVAPM 145

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            A   G +G +  V   ++  + T  A+     R GA  A L   H D+  F+  ++   
Sbjct: 146 DALQTGEDGGTGSVCEVIERFDHTCAALALANTRGGAQMAVLRCNHPDLAAFVAAKRG-- 203

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
             R+R    N +  + D FM+ V  +A W L    E S      G              D
Sbjct: 204 --RKRWTTFNVSVAVTDAFMQAVADDAQWRLQHRAEPSAQRRAAGAHL----------LD 251

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
            G    +  + A  LW  ++     +  P + F D  N  +    +  + ++N C E  L
Sbjct: 252 NGHW-CYATVPARQLWDMLVEAAHHSAEPGLLFIDTINAANDLAELETIAATNPCGEQPL 310

Query: 591 NSSSEETAVCNLGSINL-------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            +       C LG INL               FD+      +   VR+LDN IDI    +
Sbjct: 311 PAWGS----CVLGPINLSRWIQHPFGVGGQPMFDFVSFGRAVHIQVRMLDNAIDITRWPL 366

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +  +  H  R IG+G+ G   AL ++ +PY +PEA  +A +    +  +A +AS  LAQ
Sbjct: 367 IEHMREAHAKRRIGVGVTGLADALTMMGLPYQAPEARNLAVQIGRCLRDNAYAASAALAQ 426

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ER  Y  F+    ++ + P   +  L   VR+ +A +                 G+RNS+
Sbjct: 427 ERSPYPLFRA---ERSLAPGHFVATLPGAVRETIARH-----------------GLRNSH 466

Query: 763 CMAIAPTATIANICG--VSQSIDPSYQNLYVK 792
            +++APT +++   G   S  I+P++   Y +
Sbjct: 467 LLSLAPTGSVSLAFGGNCSSGIEPAFDWAYQR 498


>gi|315425011|dbj|BAJ46685.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1044

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/510 (21%), Positives = 204/510 (40%), Gaps = 88/510 (17%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
            PQ  +CF+ ++ DDL    GI     + A + KY  G G +++ +R  G  + G  G S
Sbjct: 192 RPQAHACFILSIKDDLVNPGGIMDTWVKQARIYKYGSGEGCNYSTLRAKGEPLSG-GGVS 250

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            GV+ FLKV +  A ++  GG  R+ A    L   H ++E+F+D +     + ++   + 
Sbjct: 251 SGVMSFLKVGDAVAGSIKSGGTTRRAAKMVVLNIDHPEIEDFIDWKMK---EEQKVAALV 307

Query: 481 TANWIPDL----------------------FMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            A + PD                       FM+ V +N  W L                 
Sbjct: 308 AAGYSPDFEGEAYQTVSGQNSNNSVRVTNEFMRAVLENRDWAL----------------- 350

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                   R+ D   +K    + A  LW K+    +    P + F    N  +     G 
Sbjct: 351 -------TRRTDGKPVKF---VKARYLWEKIAKAAWACADPGLQFDTTINEWNTCPETGR 400

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVI 636
           ++++N C+E     ++     CNL S+NL+  +   +  FD +     +R    VL+  +
Sbjct: 401 INATNPCSEFNFLDNT----ACNLASLNLVKFYDEEKGVFDVEAFRHAVRLWTIVLEITV 456

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +  +   +  + ++  R++GLG       L  + +PY S E   +A      ++    +
Sbjct: 457 GMAQYPSPEIAEMSYKTRSLGLGYANLGGLLMRMGLPYDSDEGRAVAAVITALMTGEVYA 516

Query: 697 ASVELAQERGAYSSFKGSLWD---------QGVF---PIDSIGLLAEVRDELA------- 737
            S E+A   G +  F+ +            + ++   P +  GL  E++  L        
Sbjct: 517 TSAEIASIAGPFEEFEKNRVHVLRVLNNHRRAIYQAKPHEYEGL--EIKPHLPPLELAPK 574

Query: 738 -MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM 795
            +   +R  WD      +  G+RN+    IAPT TI  +    +  ++P +  + +K  +
Sbjct: 575 YLLDEARASWDRAVAMAEKYGVRNAQATLIAPTGTIGLLMDCDTLGVEPDFSLVKLKKLV 634

Query: 796 SGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
            G  F +VN  L   L++   + E  I D+
Sbjct: 635 GGGYFKLVNRSLEPALRKLG-YSEKQIRDI 663


>gi|257056733|ref|YP_003134565.1| vitamin B12-dependent ribonucleotide reductase [Saccharomonospora
           viridis DSM 43017]
 gi|256586605|gb|ACU97738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Saccharomonospora viridis DSM 43017]
          Length = 955

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 141/603 (23%), Positives = 247/603 (40%), Gaps = 50/603 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT   Q +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 140 FSFNSPVWFNVGTSSKQQVSACFILSVDDTMESILNWYKEEGLIFKGGSGAGLNLSRIRS 199

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVEEF++ +  
Sbjct: 200 -SRELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEEFIETKAR 258

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL    ++    QNA  ++   DE     +  G +F +    
Sbjct: 259 ---EEHKIRALRDAGFDMDLGGADISSVQYQNANNSVRVSDEFMQAVET-GGDFGL---- 310

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R    GEI    ++ A +L+RKM    +E   P I + D  N        G + +SN 
Sbjct: 311 --RARTTGEI--IERVDARSLFRKMAQAAWECADPGIQYDDTINDWHTCPESGRITASNP 366

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NLL    ++  FD +     +   +  +D  I      
Sbjct: 367 CSEYMHLDNSS-----CNLASLNLLKFLRDDGTFDAELFVKAVELVITAMDISICFADFP 421

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E   ++    R +G+G     + L      Y S     +A      ++  +   S ELA
Sbjct: 422 TEAIAETTRKFRQLGIGYANLGALLMATGHAYDSEGGRALAAAITSLMTAVSYRRSAELA 481

Query: 703 QERGAYSSF-KGSLWDQGVF----PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
              G Y  + + +   Q V       + +     V D  A+   +   W+   +     G
Sbjct: 482 GIVGPYEGYARNAEAHQRVMRKHAAANELVRTYHVND-AAIRAVATKEWNRGIELGMANG 540

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDL 815
            RNS    +APT TI  +    +  I+P +  +  K  +  G   +VN+ +   L+    
Sbjct: 541 WRNSQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMKIVNNAVPRALRSLGY 600

Query: 816 WD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
            +   EA++  +  H    G++   P  L+  H   F+       I PM  +   +  Q 
Sbjct: 601 QEEQIEAIVDYISEH----GHVVNAP-GLRPEHYEVFDCAVGERSIAPMGHVRMMAAVQP 655

Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++  A S  + + E +  + ++ IY Q W +GLK     R         ST K    +  
Sbjct: 656 FLSGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRDNCKVGQPLSTAKKEKSESR 715

Query: 925 AVP 927
           A P
Sbjct: 716 AEP 718


>gi|329939982|ref|ZP_08289264.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
 gi|329300808|gb|EGG44704.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
          Length = 969

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 133/555 (23%), Positives = 228/555 (41%), Gaps = 46/555 (8%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G
Sbjct: 133 YALLHQI-FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAG 191

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVE
Sbjct: 192 LNLSRIRS-SKELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVE 250

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
            F+  +    +  R   D   A +  DL    +T    QNA  ++        ++D + K
Sbjct: 251 NFIQTKVKEEEKIRALRD---AGFDMDLGGDDITSVQYQNANNSV-------RVNDTFMK 300

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E   +        GE  V  +I A +L+RKM    +    P I + D  N        
Sbjct: 301 AVETGGKFGLTSRMTGE--VIEEIDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPES 358

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVR 630
           G ++ SN C+E + L+++S     CNL S+NL+    ++      F+ ++    +   + 
Sbjct: 359 GRINGSNPCSEYMHLDNTS-----CNLASLNLMKFLKDDGQGHQSFETERFQKLVELVIT 413

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            +D  I       +K  ++    R +G+G     + L      Y S     +A      +
Sbjct: 414 AMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLM 473

Query: 691 SFHAISASVELAQERGAYSSF-KGSLWDQGVFP--IDSIGLLAEVRD-ELAMNRTSRLPW 746
           +  A   S ELA   G Y  + + +   Q V     D+  +   + D +  +   +   W
Sbjct: 474 TGTAYRRSAELASVVGPYDGYARNAQPHQRVMKQHADANAVAPRMDDLDTPVWAAATEAW 533

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            ++++  +  G RNS    +APT TI  A  C  +  ++P    +  K  + G    + +
Sbjct: 534 QDVQRLGEKHGFRNSQASVLAPTGTIGLAMSCDTT-GVEPDLALVKFKKLVGGGSMQIVN 592

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLI 857
             V +  +R  + E  I  +  H    GN+   P  LK  H   F+       I PM  +
Sbjct: 593 GTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAP-GLKAEHYEVFDCAMGERAISPMGHV 651

Query: 858 ESASRRQKWIDQAQS 872
              +  Q WI  A S
Sbjct: 652 RMMAAIQPWISGAIS 666


>gi|218288525|ref|ZP_03492802.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241182|gb|EED08357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 1065

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 127/550 (23%), Positives = 210/550 (38%), Gaps = 111/550 (20%)

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  +   G  + G      GV   + V     +   QGG R+GA+   L   H D+ +F+
Sbjct: 364 WGLLYDKGNQVFGEGFGPVGVGEIMSVGCQLTL---QGGSRRGALMLILNDRHADLPKFI 420

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAY 522
             ++  G         N +  + + FM+   +   W L F P    +  D          
Sbjct: 421 RAKQVDG----VITGANISVGVSEEFMQAKRRGESWQLGFVPPSHREAFD---------- 466

Query: 523 ENYERQADRGE-IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            ++ R  + G+  +V   ISA  LWR +    +++  P + F    N  S   +   + +
Sbjct: 467 GDFGRWLEEGKPFEVTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVA 526

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD------------------------ 617
           +N C E  L        +CNLG++ +LA FAN   D                        
Sbjct: 527 TNPCGEQPLPP----YGICNLGAV-VLARFANGFRDSGVRTEFSDPKREAYVRSRLLEKF 581

Query: 618 -------------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                        +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG  
Sbjct: 582 PADEAEFLLHHIRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLH 641

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +    I Y S E+V++ D  M  ++  A   SVELA+E G +  F    + Q  F   
Sbjct: 642 DLMLYCGIRYGSEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKFLQSGF--- 698

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                      +A  R        + + ++  G+RN   M IAPT T   + G S   +P
Sbjct: 699 --------MRHMAAERP------HVVEAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEP 744

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y   Y +++  G F   ++ +V + ++    +E+                     L   
Sbjct: 745 YYAWSYFRNSRLGLFE-EHAAIVEQYRREHPSEES---------------------LPPY 782

Query: 845 HATAFEIDPMWLIESASRRQKWIDQA-----QSLNLYLDEPSGKKLDFIYRQAWLMGLK- 898
             TA E+ P   +   +  Q+WID +      + N Y  E + K  D  Y     +G K 
Sbjct: 783 FVTAMELTPEEHVRVQAALQRWIDSSISKTCNAPNSYTVEDTVKLYDLAYE----LGCKG 838

Query: 899 -TTYYLRSRS 907
            T Y   SRS
Sbjct: 839 ITIYRDGSRS 848


>gi|40965509|gb|AAR97976.1| B12-dependent ribonucleoside diphosphate reductase [Corynebacterium
           nephridii]
          Length = 1260

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 138/564 (24%), Positives = 234/564 (41%), Gaps = 93/564 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEELSGG 248

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN-------- 468
             KS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 249 G-KSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASL 307

Query: 469 -TGDDRRRTH-----------------------------DMNTA--NWIPDLFMKRVTQN 496
            TG    + H                             ++  A  N +P+ ++KRV Q 
Sbjct: 308 VTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEIK 535
           A  G+T      +  D  S+ +  + G+          EF  A EN   +   A R + +
Sbjct: 368 ARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARR-DGR 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINLL +   +  FD      T R    VL+  + +     ++  + ++ +R
Sbjct: 484 DTA-CNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLSYEYR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S E   I       ++  A + S E+A+E G + S++  
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPN 602

Query: 713 ----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+AE   +  M   +R  WD+  +  +  
Sbjct: 603 AEHMLRVIRNHRLAAHGQTEGYEGLAVNPVALIAEDCPDQDMITHARAAWDKALELGEKH 662

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 663 GYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 722

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I++++ +    GNI + P
Sbjct: 723 -YSESQIAEIEAYAVGHGNINQAP 745


>gi|78223117|ref|YP_384864.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194372|gb|ABB32139.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 279

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 35/256 (13%)

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+  LA  I+TAVR LD+ ID N + +   +  +  +R IGLG+MG+   L  L +PY  
Sbjct: 11  DFPSLAEDIKTAVRFLDDTIDANIYPLPAIELMHKGNRKIGLGVMGWADLLLRLGLPYNH 70

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           P++  +A   M+F+   +  AS ELA+ERG + +F GS++D    P              
Sbjct: 71  PQSFALARSLMKFVRDTSRKASAELAEERGVFPNFAGSVYDAPDRP-------------- 116

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                          RV     RN+    IAPT T+A I   S  I+P +   Y ++ + 
Sbjct: 117 ---------------RV-----RNATTTTIAPTGTLATIADCSSGIEPLFALAYKRNVLG 156

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            + T +N + +N  K+R L+ + ++  +    G++  I  IP D++++  TA EI     
Sbjct: 157 TELTEINGYFLNVAKERGLFSDELMQKV-MEQGNLRGITGIPADIRRLFKTALEIPAADH 215

Query: 857 IESASRRQKWIDQAQS 872
           IE  +  Q++ D A S
Sbjct: 216 IEMQAAFQEYTDNAVS 231


>gi|209967330|ref|YP_002300245.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
 gi|209960796|gb|ACJ01433.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
          Length = 1191

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 35/268 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF-LTTVPD 378
           + RVA  LA  E +       F + L  F F+ +   L  +GTR    L +CF + TVPD
Sbjct: 48  WTRVARALAAPERDPAAWEERFRSALEGFRFLPAGRILAGAGTRRTVTLFNCFVMGTVPD 107

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           D+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V +     +
Sbjct: 108 DMGGIFAHLREAALTLQQGGGIGYDFSTLRPKGAPVAGVGADASGPVSFMDVWDSMCRTI 167

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A L   H D+E F+D ++  G    R  + N +    D FM  V ++  
Sbjct: 168 MSAGSRRGAMMATLRCDHPDIELFIDAKREPG----RLRNFNLSVLATDDFMAAVREDRP 223

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L                             R + +VFR + A ALW +++   ++   
Sbjct: 224 WPL-----------------------------RFDGRVFRTVPARALWDRIMRATYDYAE 254

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P + F D  N ++   +   + ++N C 
Sbjct: 255 PGVIFIDRINEQNNLSYCETISATNPCV 282



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 152/334 (45%), Gaps = 55/334 (16%)

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVL 632
           VVH+   C E  L         C LGS+NL A   +      + D ++LA  +  AVR++
Sbjct: 654 VVHN---CGEQPL----PPYGACLLGSVNLAALVRDPFTPAARLDREELARVVPLAVRMM 706

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNV+D++   +E  +      R IGLG+ G   AL L  + Y S   V + +E +  I  
Sbjct: 707 DNVVDVSRFPLEAQEAEAQAKRRIGLGVTGLADALILCGVRYGSEAGVRLTEEWLRAIQV 766

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A   S  LA E+GA+      L+D+  F             E  M R   LP D +++ 
Sbjct: 767 AAYRTSAALAAEKGAF-----PLFDREAF------------LERPMVRA--LPPD-VREA 806

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +   G+RN+   +IAPT TI+   G VS  I+P +   Y ++ +  D +   +  V +L 
Sbjct: 807 IAAQGVRNALVTSIAPTGTISLFAGNVSSGIEPVFAYEYQRAVLMPDGS-RRTETVQDLA 865

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA- 870
            R L+ E M  D    D               + A + E     ++++A++R   +D A 
Sbjct: 866 YR-LYRERMGPDAPLTDAF-------------VDAQSLEPAAHLVMQAAAQRH--VDSAI 909

Query: 871 -QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
            +++N   D P     D +YRQA+ +G K  TTY
Sbjct: 910 SKTINCPADLPFEAFKD-VYRQAYELGCKGCTTY 942


>gi|220917435|ref|YP_002492739.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955289|gb|ACL65673.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 928

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 143/639 (22%), Positives = 246/639 (38%), Gaps = 97/639 (15%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            E  +L+       ++P  FN G   HPQ S+CF+  V D +  I        ML KY  
Sbjct: 129 AELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILKLAHTEGMLFKYGS 188

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHI 457
           G G++ + +R     + G  G++ G + F++  +  A  +  GGK R+ A    L+  H 
Sbjct: 189 GTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTRRAAKMVILDVDHP 247

Query: 458 DVEEFLDLRKN----------TGDD-----RRRTHD------MNTANWIPDLFMKRVTQN 496
           DV EF++ + +           G D     R   +D       N +  + D FM+ V ++
Sbjct: 248 DVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSVRVTDAFMRAVLED 307

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W L +                           R + +    I A  L R++    +  
Sbjct: 308 REWKLTA---------------------------RTDGQALETIRARDLMRQITEAAWLC 340

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N 614
           G P + F    N   P  +   +++SN C+E      S     CNL S+NL+ HF +   
Sbjct: 341 GDPGMQFDTTINAWHPCPNTDRINASNPCSEYMFLDDS----ACNLASLNLM-HFRSIEG 395

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            FD +     +   +   + ++    +      K++  +R +GLG     + L    +PY
Sbjct: 396 GFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYANLGALLMASGLPY 455

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL---------WDQGVFPIDS 725
            S      A      ++  A + S  +A+  G ++ ++ +            Q V  +D 
Sbjct: 456 DSDAGRACAAAITSLMTGEAYAMSARIAERMGPFAGYEKNRDPFLAVIRKHAQHVDLVDP 515

Query: 726 I----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
                GLLA  RD           W +  ++    G RN     +APT TI  +    + 
Sbjct: 516 TLVEAGLLAAARDA----------WGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCDTT 565

Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P    + Y K    G   +VN+ +   L++     E + S L++ D  +  IE  P 
Sbjct: 566 GIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFID-EVETIEGAP- 623

Query: 840 DLKKIHATAFE-----------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
            L+  HA  F+           I  M  I      Q ++  A S  + +    + + ++ 
Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            Y ++W +GLK     R     S   +T K  + K +AV
Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAV 722


>gi|320103134|ref|YP_004178725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
 gi|319750416|gb|ADV62176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
          Length = 1048

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 125/512 (24%), Positives = 208/512 (40%), Gaps = 50/512 (9%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+    PQ S+CF+ +V DD+  I       AML KY  G G D + +R     + G  G
Sbjct: 179 NTAYEFPQGSACFIQSVQDDMADIMRLATSEAMLFKYGSGTGTDLSTLRSSKEKLAG-GG 237

Query: 420 KSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           +  G + F+KV +  A  V  GGK R+ A    L+ WH D+ EF++ +     + R+ H 
Sbjct: 238 RPSGPVSFMKVYDAIASVVKSGGKTRRAAKMQTLKVWHPDIVEFIECKVK---EERKAHA 294

Query: 479 M----NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +      AN+  + +   + QNA  ++ + D       L   E +  +  Y     +  +
Sbjct: 295 LIRQGYDANFNGEAYSSVMFQNANLSVRATDAF-----LRAVEEDGEWVTYAVTTGK-PM 348

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R   A  L  ++    ++ G P + ++D         +   ++SSN C+E      S
Sbjct: 349 GVYR---ARDLMERIAQSAWQCGDPGMQYEDTIQRWHTCPNTAPINSSNPCSEYMFIDDS 405

Query: 595 EETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                CNL SINL+     +  FD ++  +  R  +   + ++D   +  ++   ++H  
Sbjct: 406 ----ACNLASINLMKFRREDGTFDVERFRAACRIYLTAQEILVDHVSYPTDRIALNSHRF 461

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG     S +      Y S     +A      +   A   S  +A   G +  F  
Sbjct: 462 RPLGLGYANLGSLIMASGRAYDSEAGRALAAGITAVMHGEANLTSARIAAHLGPFEGFAV 521

Query: 714 S---------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +         +    V  ID     A V +       +R  W E  +  +  G RNS   
Sbjct: 522 NREPMLKVMEMHRDAVERIDPTLCPANVLE------AARAVWKECLEMGREHGFRNSQVT 575

Query: 765 AIAPTATIANICGV-SQSIDP-----SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            IAPT TI+ +    +  I+P      Y+NL       G   +VN  +   LK    +D+
Sbjct: 576 VIAPTGTISFMMDCDTTGIEPDIALVKYKNL----AGGGMLKIVNRTVPLALKTLG-YDD 630

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             I  +  H  +   +E  P DLK  H   F+
Sbjct: 631 EEIKRVLAHVDAHDTVEGAP-DLKPEHLDVFD 661


>gi|316956309|gb|EFV46789.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 178

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+   + +    A+
Sbjct: 2   LNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIHEDDIDA---AI 58

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGG 399
           E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+E A+++K +GG
Sbjct: 59  ETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLKECAIISKSAGG 118

Query: 400 LGNDWTPVRGLGAHIHG 416
           +G +   +R  G +I G
Sbjct: 119 IGLNVHCIRASGTYIAG 135


>gi|315426696|dbj|BAJ48321.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1028

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 205/488 (42%), Gaps = 44/488 (9%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
            PQ  +CF+ ++ DDL    GI     + A + KY  G G +++ +R  G  + G  G S
Sbjct: 176 RPQAHACFILSIKDDLVNPGGIMDTWVKQARIYKYGSGEGCNYSTLRAKGEPLSG-GGVS 234

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            GV+ FLKV +  A ++  GG  R+ A    L   H ++E+F+D +     + ++   + 
Sbjct: 235 SGVMSFLKVGDAVAGSIKSGGTTRRAAKMVVLNIDHPEIEDFIDWKMK---EEQKVAALV 291

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A + PD   +     +G    S + V   ++      E       R+ D   +K    +
Sbjct: 292 AAGYSPDFEGEAYQTVSGQN--SNNSVRVTNEFMRAVLEDRDWALTRRTDGKPVKF---V 346

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW K+    +    P + F    N  +     G ++++N C+E     ++     C
Sbjct: 347 KARYLWEKIAKAAWACADPGLQFDTTINEWNTCPETGRINATNPCSEFNFLDNT----AC 402

Query: 601 NLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NL S+NL+  +   +  FD +     +R    VL+  + +  +   +  + ++  R++GL
Sbjct: 403 NLASLNLVKFYDEEKGVFDVEAFRHAVRLWTIVLEITVGMAQYPSPEIAEMSYKTRSLGL 462

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD- 717
           G       L  + +PY S E   +A      ++    + S E+A   G +  F+ +    
Sbjct: 463 GYANLGGLLMRMGLPYDSDEGRAVAAVITALMTGEVYATSAEIASIAGPFEEFEKNRVHV 522

Query: 718 --------QGVF---PIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRVKTIGM 758
                   + ++   P +  GL  E++  L         +   +R  WD      +  G+
Sbjct: 523 LRVLNNHRRAIYQAKPHEYEGL--EIKPHLPPLELAPKYLLDEARASWDRAVAMAEKYGV 580

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  ++P +  + +K  + G  F +VN  L   L++   +
Sbjct: 581 RNAQATLIAPTGTIGLLMDCDTLGVEPDFSLVKLKKLVGGGYFKLVNRSLEPALRKLG-Y 639

Query: 817 DEAMISDL 824
            E  I D+
Sbjct: 640 SEKQIRDV 647


>gi|330318802|gb|AEC11061.1| ribonucleotide reductase large subunit a [Camellia sinensis]
          Length = 160

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  IPD+LK I+ T +EI   
Sbjct: 1   LSGEFVVVNKHLLHDLTEMGLWSPALKNQIIYEDGSVQKIPEIPDELKVIYKTVWEIKQK 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K
Sbjct: 61  TLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRSRAAADAIK 120

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+      LN  P  + + ++    +  S T+  EC  C
Sbjct: 121 FTVDT--SILNEKPKIEDDENSKMSQMVCSLTNREECMAC 158


>gi|258511853|ref|YP_003185287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478579|gb|ACV58898.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 1065

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 195/508 (38%), Gaps = 100/508 (19%)

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  +   G  + G      GV   + V     +   QGG R+GA+   L   H D+ +F+
Sbjct: 364 WGLLYDKGNQVFGEGFGPVGVGEIMSVGCQLTL---QGGSRRGALMLILNDRHADLPKFI 420

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAY 522
             ++  G         N +  + + FM+   +   W L F P    +  D          
Sbjct: 421 RAKQVDG----VITGANISVGVSEEFMQAKRRGESWQLGFVPPSHREAFD---------- 466

Query: 523 ENYERQADRGE-IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            ++ R  + G+  +V   ISA  LWR +    +++  P + F    N  S   +   + +
Sbjct: 467 GDFGRWLEEGKPFEVTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVA 526

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD------------------------ 617
           +N C E  L        +CNLG++ +LA FAN   D                        
Sbjct: 527 TNPCGEQPLPP----YGICNLGAV-VLARFANGFRDSGVRTEFSDPEREAYVRSLLLEKF 581

Query: 618 -------------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                        +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG  
Sbjct: 582 PADEAEFLLHHIRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLH 641

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +    I Y S E+V++ D  M  ++  A   SVELA+E G +  F    + Q  F   
Sbjct: 642 DLMLYCGIRYGSEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKFLQSGF--- 698

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                      +A  R        + + ++  G+RN   M IAPT T   + G S   +P
Sbjct: 699 --------MRHMAAERP------HVVEAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEP 744

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y   Y +++  G F   ++ +V + ++    +E+                     L   
Sbjct: 745 YYAWSYFRNSRLGLFE-EHAAIVEQYRREHPSEES---------------------LPPY 782

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQS 872
             TA E+ P   +   +  Q+WID + S
Sbjct: 783 FVTAMELTPEEHVRVQAALQRWIDSSIS 810


>gi|297183206|gb|ADI19346.1| ribonucleotide reductase, alpha subunit [uncultured Chloroflexi
           bacterium HF0500_03M05]
          Length = 465

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 44/300 (14%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            +Y  L   +R A R LDNVID N ++++K +K     R IGLG+MGF   L  L + Y 
Sbjct: 1   MNYHGLRDVVRVATRFLDNVIDANTYSVDKIRKMTRDTRKIGLGVMGFADMLTKLRVSYD 60

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E +E+    M F+   +   S ELA+ RG + +F GS++D    P             
Sbjct: 61  SDEGLEMGSSIMRFVQRESDQMSQELAEVRGVFPAFNGSIYDAHGQP------------- 107

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                 MRN+  + +APT TI+ I G S  I+P +   Y K N+
Sbjct: 108 ---------------------KMRNACRLTVAPTGTISMIAGCSSGIEPLFALCYNKHNI 146

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISD--LKY--HDGSIGNIERIPDDLKKIHATAFEI 851
            G  +++    +++  ++   DE   S   + Y    GS+   + +P   K++  T+ +I
Sbjct: 147 LGGESLL---YIDQEFEKAAHDEGFYSKELMNYLADGGSLQERDDVPGWAKRVFVTSADI 203

Query: 852 DPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSA 908
            P   ++  +  Q+ +D A S  + + +  +   +   Y  AW +  K  T Y   SR A
Sbjct: 204 SPEMHVKMQAAFQESVDAAISKTINFPNTATEDDVRSAYMLAWELACKGITVYRAGSREA 263


>gi|197122652|ref|YP_002134603.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. K]
 gi|196172501|gb|ACG73474.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 925

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 145/639 (22%), Positives = 245/639 (38%), Gaps = 97/639 (15%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            E  +L+       ++P  FN G   HPQ S+CF+  V D +  I        ML KY  
Sbjct: 129 AELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILKLAHTEGMLFKYGS 188

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHI 457
           G G++ + +R     + G  G++ G + F++  +  A  +  GGK R+ A    L+  H 
Sbjct: 189 GTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTRRAAKMVILDVDHP 247

Query: 458 DVEEFLDLRKN----------TGDD-----RRRTHD------MNTANWIPDLFMKRVTQN 496
           DV EF++ + +           G D     R   +D       N +  + D FM+ V ++
Sbjct: 248 DVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSVRVTDAFMRAVLED 307

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W L +                           R + +    I A  L R++    +  
Sbjct: 308 REWKLTA---------------------------RTDGQALETIRARDLMRQITEAAWLC 340

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N 614
           G P + F    N   P  +   +++SN C+E      S     CNL S+NL+ HF +   
Sbjct: 341 GDPGMQFDTTINAWHPCPNTDRINASNPCSEYMFLDDS----ACNLASLNLM-HFRSIEG 395

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            FD +     +   +   + ++    +      K++  +R +GLG     + L    +PY
Sbjct: 396 GFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYANLGALLMASGLPY 455

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSS-------FKGSLWD--QGVFPIDS 725
            S      A      ++  A + S  +A   G ++        F G +    Q V  +D 
Sbjct: 456 DSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVIRKHAQHVDLVDP 515

Query: 726 I----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
                GLLA  RD           W +  ++    G RN     +APT TI  +    + 
Sbjct: 516 TLVEPGLLAAARDA----------WGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCDTT 565

Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P    + Y K    G   +VN+ +   L++     E + S L++ D  +  IE  P 
Sbjct: 566 GIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFID-EVETIEGAP- 623

Query: 840 DLKKIHATAFE-----------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
            L+  HA  F+           I  M  I      Q ++  A S  + +    + + ++ 
Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            Y ++W +GLK     R     S   +T K  + K +AV
Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAV 722


>gi|134291696|ref|YP_001115465.1| hypothetical protein Bcep1808_6310 [Burkholderia vietnamiensis G4]
 gi|134134885|gb|ABO59210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 598

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 156/630 (24%), Positives = 255/630 (40%), Gaps = 85/630 (13%)

Query: 319 AFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL- 373
           A F RVA  L+L E  + +   E   F NL      + +   L N+G      + +CF+ 
Sbjct: 25  AVFQRVARALSLAEPPELRAQCERAFFQNLQRGA--IGAGRILANAGADTGGTMVNCFVH 82

Query: 374 -TTVPDDL------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
              +P D         +  AL +        GG+G D++PV  L A+       +     
Sbjct: 83  PLAMPADTRARAVDAALTHALGDARRTLLMGGGIGYDFSPVPPLDAYERRAASDAGACAA 142

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             +  +    A+   G R+GA  A L   H D+  F+  ++     R R    N +  I 
Sbjct: 143 IDRF-DAMCRALPFTGPRRGAQMAVLRCDHPDLAAFVAAKRG----RSRWPTFNVSVGIT 197

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D FM+ V  +  W L        +H        +A     RQ D     V+  ++A  LW
Sbjct: 198 DAFMEAVLHDRPWAL--------VHRAPPHRASVAAP---RQPDGNH--VYTTVAARTLW 244

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           R+++    ++  P + F D     +P +    + ++N C E  L +       C LG I+
Sbjct: 245 REIVAAARDSAEPGLLFVDTIRDANPLREHERIDATNPCGEQPLPAYGS----CVLGPID 300

Query: 607 L----LAHFA---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           L    L  F      +FD+  LA  +R  VR+LDNV+D+    +   ++     R IG+G
Sbjct: 301 LSRFVLHPFGVEGKPRFDFATLADAVRIQVRMLDNVLDLTAWPLAAHQREARRTRRIGVG 360

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G   AL +L + Y S +A   A   +  +  HA +AS  LA ERGA+ ++        
Sbjct: 361 VTGLADALTMLRLRYDSADARAFARSIVLSMREHAFAASAALAAERGAFPAYD------- 413

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA-NIC-G 777
             P D +   A  R  L +N         ++  +   G+RNS+ ++ AP  +++   C  
Sbjct: 414 --PADYLTGPAH-RTLLPLN---------VQHAIARHGLRNSHLLSFAPAGSVSLAFCDN 461

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  I+P+      +   + D           ++Q    + A       H    G  ER+
Sbjct: 462 CSNGIEPAVGWTQRRMVHTAD---------GRVRQFHAQNHAYRLFRALH----GEHERL 508

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
           PD       TA EI P   +   +  Q  +D   S  + L D  S  ++D ++ QAW  G
Sbjct: 509 PD----YFVTAAEIAPADHVAMLAALQPCVDAGISKTVTLPDRCSLAQVDALFVQAWRDG 564

Query: 897 LKTTYYLRSR---SATSVEKSTLKGVDGKL 923
           LK     R     +A  ++ +T    DG +
Sbjct: 565 LKGITVFRPDPRLAAVVMDDATQARRDGPV 594


>gi|332087396|gb|EGI92524.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 348

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           ++D  N  +P    G ++ SNLC+EI  +NS+SE               CNLGS+N+ AH
Sbjct: 2   YEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNI-AH 58

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L  
Sbjct: 59  ----TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 114

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y SPEA++  +     I++HA+  S+ LA+ERG  ++ FK S +  G +    +  
Sbjct: 115 EGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQG 174

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 175 NWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATS 234

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + + K   +G       F+ NE       + A+  D                
Sbjct: 235 SIHPIVAKVEIRKEGKTGRVYYPAPFMTNE-------NLALYQD---------------- 271

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                    +EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 272 --------TYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIK 323

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY+R R   ++E + ++G
Sbjct: 324 TLYYIRLRQ-MALEGTEIEG 342


>gi|163784235|ref|ZP_02179159.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880498|gb|EDP74078.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 464

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 32/259 (12%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
            E EK   +++ L++   FM +TP L N G       +CF+  + D L  I   L+  A+
Sbjct: 230 NEYEKEIEDYFYLMTDKKFMPNTPVLVNFGRPLGMGMACFVLDIEDSLISIMETLKNAAL 289

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           + K  GG G +++ +R  G +I  TNG+S G I F+ + +     + QGG R+GA    L
Sbjct: 290 IFKAGGGCGYNFSKLRPKGDYISTTNGRSSGPIAFMTLYDKMTEVIKQGGVRRGANMGIL 349

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           ++ H D+EEF+  +K    + ++  + N + ++ + F     +N  + L +P +      
Sbjct: 350 DSDHPDIEEFITAKK----ENKQLTNFNISVFLKEDFWNYYKKNKPYPLINPRDG----- 400

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                 KV++ I+  AL+  ++   +E+  P + F D  N  +P
Sbjct: 401 ----------------------KVWKYINPKALFNMIVYRGWESAEPGLLFDDNINKYNP 438

Query: 573 -QQHVGVVHSSNLCTEITL 590
             +H G ++++N C E+ L
Sbjct: 439 LLKHFGKIYATNPCGEVVL 457



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  F P KI  AI KA ++V      ++       K LT++ + +L +  K 
Sbjct: 4   KIIKRDGKVVDFIPEKIQNAIFKAMLSVGKPDVKQA-------KELTKKVIEKLEESLKE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +E +QD VE  L++ G  K+ + Y+LYR++R+++R  +  
Sbjct: 57  KQIPTVEQVQDIVEQVLIEKGLSKVAKSYILYRQKRAEIRREKQQ 101


>gi|307565852|ref|ZP_07628313.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
 gi|307345476|gb|EFN90852.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
          Length = 866

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 146/644 (22%), Positives = 253/644 (39%), Gaps = 119/644 (18%)

Query: 317 PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMC-STPTLFNSGTRH--PQLSSC 371
           P+    R+A  +A  E        A + + LL  F ++  S  ++   G ++    L++C
Sbjct: 48  PEDMHWRIANEVARIEKRYVNPINAAKVFELLDHFRYIVPSGSSMVGIGNKYLLSSLANC 107

Query: 372 FLTTVPDDLYGIFGAL----QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           F+    +D++  +G +    +E   L K SG +G+D + +R  G+ I  +   S G++PF
Sbjct: 108 FVIGSAEDVHS-YGTIMHIDEEQVQLMKCSGIVGHDLSYIRPKGSSIKDSKLISTGILPF 166

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           ++   ++   V QGG   GA+   +   H DVE  +D+      D    +  N +  I D
Sbjct: 167 MERYFNSMREVVQGG-HSGALMLSVNIKHPDVESLIDVNIKKAKD----NSANISVKITD 221

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FMK V     +    P  +     ++ KE                      I A  L+ 
Sbjct: 222 EFMKAVINEESYIQQFP--IISTKPIFTKE----------------------IYAKHLFE 257

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+L   +    P + F D     S       +    +               C+L S+NL
Sbjct: 258 KILYKAYHDAEPTVLFWDNILKDSLSDSYADLGFQTISITPYYKIPLSPYDSCHLLSLNL 317

Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------ 644
            ++  +      +FD+DK A  ++ A RVLD+++D+    I+                  
Sbjct: 318 YSYVIDPFTKEARFDFDKFAEHVQIAQRVLDDIVDLELEKIDLILSNIEKASVSKEIKET 377

Query: 645 ------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                 K K+ +   R IG+G+         + + Y + E+++ + +  + ++ +A  +S
Sbjct: 378 EYNLWKKIKEKSAMGRRIGIGVTAEGDMFAAMGLCYGTQESIDFSVKVHKVMALNAYRSS 437

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V +A+ERG+++ +  S      F      L  +  DE   N   R             G 
Sbjct: 438 VNMAKERGSFAIYDASREKNNPFI-----LRLKREDEQLFNDMERY------------GR 480

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV---KSNMSGDFTVVNSFLVNELKQRDL 815
           RN +C+AIA   T++ +   +  I+P Y  +Y    K N     T  N+ L  EL     
Sbjct: 481 RNISCLAIASIKTVSLMTQTTSGIEPKYIPVYKHHDKINSYNKNTNANTDLAYEL----- 535

Query: 816 WDEAMISDLKYHDG-----SIGNIERIP-------DDLKK-----IHATAFEIDPMWLIE 858
            D +    + YH        +  IE          DDL K     +    +E   M +I 
Sbjct: 536 -DNSFREHIIYHSKFLTWMKVNGIEPTKKYSQEEIDDLIKRSPYYMTTANYESLSM-IIH 593

Query: 859 SASRRQKWIDQAQSLNL----YLDEPSGKKLDFIYRQAWLMGLK 898
                +KW DQ+ S+ +     +DE S  KL   Y +AW  G K
Sbjct: 594 MQGAIEKWTDQSVSVTINTPSSIDEDSISKL---YFEAWRCGCK 634


>gi|218294852|ref|ZP_03495706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
 gi|218244760|gb|EED11284.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
          Length = 1768

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 55/285 (19%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            C EI L         C+LG++NL A+  +  F  ++    + TA+R LDNV+D+N   ++
Sbjct: 851  CGEIPLTVGEP----CDLGALNLAAYVKDGAFQMEEFRKDVHTAIRFLDNVLDVNRFALK 906

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              +++  + R +GLG+MG   AL  + +PYAS EA E   E +  +   AI AS ELA+E
Sbjct: 907  DNEEAAKSLRRLGLGVMGLADALIKMGLPYASEEAREKVYEIISAMREEAIKASEELAKE 966

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM---RNS 761
            RG              FP+                      ++  ++  + +G+   RN 
Sbjct: 967  RGP-------------FPL----------------------YEAHREYFQALGVRPRRNV 991

Query: 762  NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR-------- 813
              + +APT T + + GVS  I+P +   +V   + G++  +   L  EL +         
Sbjct: 992  ALLTVAPTGTTSMLMGVSSGIEPVFSP-FVWRRIGGEYKPLLHPLFVELMEAYPPAPGFA 1050

Query: 814  --DLWD-EAMISDL-KYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                WD E ++ ++ K   GS+ N+  +P+ ++K+   A +I P+
Sbjct: 1051 KDGRWDWEKIVEEIQKDGHGSVQNLPFVPEPIRKVFQCAHDIPPL 1095



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 46/249 (18%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428
           VPDD+ GI  A +E A LA+       D++ +R  GA I G+ G S G + FL       
Sbjct: 206 VPDDMGGIVEAAKEAAALARQGLTPHVDFSLLRPEGAPIRGSGGTSSGPVSFLLEIFDNF 265

Query: 429 --------KVANDTAV----------AVNQGGKRKGAVCAYLETWHIDVEEF-----LDL 465
                   + A   A            V QGG R+GA  A L   H D+ +F     LD 
Sbjct: 266 LEWAALGAEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 325

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            K  GD        N +  + + FM+ + ++A W + +P EV   +  Y    E  Y   
Sbjct: 326 EKAEGD----ISTFNISVLVTEAFMRALEEDALWPV-TPVEVPGKY--YPYPLEGPYTGK 378

Query: 526 -----ERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578
                ER+     I ++  K+ A  LW ++    + TG P + F D  N  S  + +G  
Sbjct: 379 IPKLPEREDGAKAIPLYGGKVPAKWLWHEIAWHAWATGEPGLIFIDRINELSALKGLGPR 438

Query: 579 --VHSSNLC 585
             + S+N C
Sbjct: 439 YQIRSTNPC 447



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           ER F  E+   Q +  R +L      I      F RVA  +A  E  +E+   E  FY L
Sbjct: 2   ERHFFDEHA--QAIAKRQYLQPGDGDI---LGMFRRVAREIARPEKPEERAYWEEKFYEL 56

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLG 401
           +S+  F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 57  MSTKRFSPGGRILAGAGTAHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 116

Query: 402 NDWTPVRGLG 411
            +  P R  G
Sbjct: 117 VNLDPYRSKG 126


>gi|221633788|ref|YP_002523014.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
 gi|221156890|gb|ACM06017.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
          Length = 1122

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 116/501 (23%), Positives = 215/501 (42%), Gaps = 55/501 (10%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HP   +CF+ +V DDL    GIF  +   A + KY  G G +++ +R  G  + G  G S
Sbjct: 190 HPSAHACFIQSVEDDLVNPGGIFDLVLREARVFKYGAGSGTNFSKIRAEGEPLSG-GGTS 248

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++ FLKV +  A A+  GG  R+ A    ++  H D+E+F+  +    ++ ++   + 
Sbjct: 249 SGLMSFLKVFDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEKFIRWK---AEEEKKVAALV 305

Query: 481 TANWIPDL----FMKRVTQNAGWTLFSPDEV--SDLHDLYGKEFEIAYENYERQADRGEI 534
            A +  D     +     QN+  ++  PDE   + L D   +++ + +        R + 
Sbjct: 306 AAGYSADFNGEAYATVSGQNSNNSVRVPDEFIRAVLED---RDWHLRW--------RTDG 354

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           ++ + + A  LW+ +    ++   P I +    N        G +++SN C+E       
Sbjct: 355 RIAKTVRARELWQMIAEAAWQCADPGIQYDTTINDWHTCPASGRINASNPCSEYMF---L 411

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK----SN 650
           ++TA CNL S+NLL  +      +D  A   R AVR+   V++I     +   +    ++
Sbjct: 412 DDTA-CNLASLNLLKFYDAKSGRFDIAA--FRHAVRLWTIVLEITVLMAQYPSREIAWNS 468

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG     S L  + +PY S  A  +A      ++  A + S E+A   G + +
Sbjct: 469 YRFRTLGLGYANLGSLLMTMGLPYDSDRARAVAAAITAIMTGEAYATSAEMAAILGPFPA 528

Query: 711 F--------------KGSLWDQGVFPIDSIGLLAEVRDEL----AMNRTSRLPWDELKKR 752
           F              + + +D      + + +  +  D       +   +R  WD   + 
Sbjct: 529 FPENREHMLRVIRNHRRAAYDAHPEEYEGLHIAPQGLDATHCPPELVAAAREAWDRALEL 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    +APT TI  +    +  I+P +  +  K    G  F +VN  +   L
Sbjct: 589 GERFGYRNAQATLLAPTGTIGLLMDCDTTGIEPDFALVKFKKLAGGGYFKIVNRSVAPAL 648

Query: 811 KQRDLWDEAMISDLKYHDGSI 831
           ++     E +   L Y  G++
Sbjct: 649 ERLGYTPEQIQDILTYVLGTL 669


>gi|67008230|emb|CAH18520.1| ribonucleoside-diphosphate reductase alpha chain [Rhodobacteraceae
           bacterium 198]
          Length = 340

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 162/367 (44%), Gaps = 61/367 (16%)

Query: 576 VGVVHSSNLCTEI-TLNSSSEET-----------AVCNLGSINLLAHFANNQFDYDKLAS 623
            G +  SNLC+EI  +N++SE T             CNLGS+N+         D   LA 
Sbjct: 5   AGRISMSNLCSEILQVNTASEFTDDLSYAQMGTDISCNLGSMNIA-----RTMDGGDLAG 59

Query: 624 TIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           T+ TA+R L+ V +++   ++   +K N    AIGLG M     L    I Y S E ++ 
Sbjct: 60  TVGTAIRALNAVSEMSAIDSVPSIRKGNDEGHAIGLGQMNLHGYLARERIYYGSAEGIDF 119

Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF---PIDSIGL-----LAEVR 733
            +     + FHA+SAS  LAQE G  +  F+ S +  G F    +D   L     + E+ 
Sbjct: 120 TNIYFCTVLFHALSASNALAQEIGTRFKGFEDSTYADGSFFAKYVDRDWLPETDRVRELF 179

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-K 792
           +   +   SR  W  L  +VK  G+ N N  A+ PT +I+ I   + SI P    + + K
Sbjct: 180 EGAGIPVPSREDWSALCDKVKEHGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRK 239

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G       ++ NE                       N+E   D        A++I 
Sbjct: 240 EGKIGRVYYPAPYMTNE-----------------------NLEYYRD--------AYDIG 268

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P  +I++ +   + +DQ  SL L+   E S + ++     AW  G+KT YY+R R   ++
Sbjct: 269 PEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-QAL 327

Query: 912 EKSTLKG 918
           E + ++G
Sbjct: 328 EGTEVEG 334


>gi|316933806|ref|YP_004108788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
 gi|315601520|gb|ADU44055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
          Length = 1257

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 135/598 (22%), Positives = 234/598 (39%), Gaps = 115/598 (19%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 308 VTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARRALVQDAMIKRVIQF 367

Query: 497 A-------GWTLFSPDEVSDLHDLYGKEFEIAYEN--------------YERQAD----- 530
           A        + ++  D  S+ +        +A +N               E   D     
Sbjct: 368 AKQGYKEIDFPIYDTDWDSEAY------LTVAGQNSNNSVSLRDDFLRAVETDGDWHLTA 421

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+ T  + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLLA +    N+FD D      R    VL+  + +     ++  +
Sbjct: 482 ---LDDTA-CNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEISVLMAQFPSKQIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + + Y S E   +       ++  A + S E+A + GA+
Sbjct: 538 LSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAF 597

Query: 709 SSFK---------------GSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLP 745
             +K                +  +  V+        P+D  G    + D +A  + +   
Sbjct: 598 PGYKKNADHMLRVIRNHRRAAHGETRVYEALSVNPVPLDHAG--CPIPDAVAHAKAA--- 652

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 653 WDKALELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 712

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             +   L+    + E  I +++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 713 RAVPAALRVLG-YPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769


>gi|325066266|ref|ZP_08124939.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces
           oris K20]
          Length = 306

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 140/321 (43%), Gaps = 48/321 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A TIRTAVR L  V D  +  ++    + NH   AIGL
Sbjct: 7   CNLGSLNIA-----KTMDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGL 61

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L    I Y S E ++  +     + F A++AS E+A ERG ++  F+ S + 
Sbjct: 62  GQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYA 121

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F       D + +   V++  A +     +R  W  L +RVK  G+ N N  A+ PT
Sbjct: 122 SGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAALAERVKKGGLYNRNLQAVPPT 181

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + + K    G       F+ N+                   
Sbjct: 182 GSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND------------------- 222

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
               N+E   D        A+EI P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 223 ----NLEYYRD--------AYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNR 270

Query: 888 IYRQAWLMGLKTTYYLRSRSA 908
               AW  G+KT YY+R R A
Sbjct: 271 AQIYAWRKGIKTLYYIRLRQA 291


>gi|320451209|ref|YP_004203305.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
 gi|320151378|gb|ADW22756.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
          Length = 1388

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 157/342 (45%), Gaps = 56/342 (16%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            C E+ L         C+LG++NL A+  + +F  ++    + TA+R LDNV+D+N   + 
Sbjct: 851  CGEVPLTVGEP----CDLGALNLAAYVKDGEFQMEEFRRDVHTAIRFLDNVLDVNRFALP 906

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              +++    R +GLG+MG   AL  + +PY+S EA E   E M  +   AI AS  LA+E
Sbjct: 907  DNEEAAKKLRRLGLGVMGLADALIKMGLPYSSEEAREKVYEIMSAMREEAIKASEALAKE 966

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            RG             VFP      L E   E          ++ L  R +    RN   +
Sbjct: 967  RG-------------VFP------LYEAHQEY---------FEALGIRPR----RNVALL 994

Query: 765  AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL----------KQRD 814
             +APT T + + GVS  I+P +   +V   + G++  +   L  EL          ++  
Sbjct: 995  TVAPTGTTSMVMGVSSGIEPVFSP-FVWRRIGGEYKPLLHPLFVELMETYPPHPDYEKDG 1053

Query: 815  LWD-EAMISDLKYHD-GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID---- 868
             WD E +I+ ++    GS+ N+  +P+ ++++   A +I P+  +      Q+  D    
Sbjct: 1054 KWDWEKIIAAIQEDGHGSVKNLPFVPEAIRRVFECAHDIHPLDHVRMQGAVQRAFDAEGY 1113

Query: 869  QAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             A SL+  ++ P   + ++++  Y +A+  G K     R  S
Sbjct: 1114 AANSLSKTINLPNHATPEEVEEAYLEAYRTGCKGITVYRDGS 1155



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 97/249 (38%), Gaps = 46/249 (18%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDD+ GI  A +  A LA        D++ +R  GA I G+ G S G + FL    D  
Sbjct: 206 VPDDMGGIVEAAKAAAALALKGLEPHVDFSLLRPEGAPIRGSGGTSSGPVSFLMEIFDNF 265

Query: 436 V-------------------------AVNQGGKRKGAVCAYLETWHIDVEEF-----LDL 465
           +                          V QGG R+GA  A L   H D+ +F     LD 
Sbjct: 266 LEWAALGGEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIEHPDLLDFLTAKDLDR 325

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            K  GD        N +  + + FMK + ++A   LFS   +      Y       Y   
Sbjct: 326 EKAEGD----ISTFNISVLVTEAFMKALEEDA---LFSVTPIEVPGKYYPHPLGSTYTGQ 378

Query: 526 -----ERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578
                ER+     + +F  K+ A  LW ++    + TG P + F D  N  S  + +G  
Sbjct: 379 IPALPEREDGAKPVPLFGGKVPARWLWHEIAWHAWATGEPGLIFVDRINELSALKGLGPR 438

Query: 579 --VHSSNLC 585
             + S+N C
Sbjct: 439 YQIRSTNPC 447



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           ER F F+     I   +YF   +G  + M    F RVA  +A  E  +++   E  FY+L
Sbjct: 2   ERYF-FDEHAQAIARRQYFQEGDGDILGM----FRRVAREIAKVEKPEDRVYWEEKFYDL 56

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLG 401
           ++S  F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 57  MASKRFSPGGRILAGAGTPHGNLLNCFVQGATQYPPESFNGIMEVAKKLALVTKVGGGNG 116

Query: 402 NDWTPVRGLG 411
            +  P R  G
Sbjct: 117 VNLDPYRSKG 126


>gi|46200232|ref|YP_005899.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
 gi|46197860|gb|AAS82272.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
          Length = 1800

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 156/345 (45%), Gaps = 62/345 (17%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            C EI L         C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   + 
Sbjct: 1293 CGEIPLTVGEP----CDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFALP 1348

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + +  + R +GLGLMG   AL  + +PY S EA     E +  +   AI AS  LA+E
Sbjct: 1349 DNEMAAKSLRRLGLGLMGLADALIKMGLPYDSEEARRKVYEIVSVMREEAIRASEALAEE 1408

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR---NS 761
            RG              FP+                      ++E ++  +++G+R   N 
Sbjct: 1409 RGP-------------FPL----------------------YEEHREYFQSLGIRPRRNV 1433

Query: 762  NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR-------- 813
              + +APT T + + GVS  I+P +   +V   + G++  +   L  EL +         
Sbjct: 1434 ALLTVAPTGTTSMLMGVSSGIEPVFSP-FVWRRIGGEYKPLLHPLFVELMEAYPPAPGYA 1492

Query: 814  --DLWD-EAMISDL-KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID- 868
                WD E +I ++ K   GS+ N+  +P+ ++K+   A ++ P+  +      Q+  D 
Sbjct: 1493 KDGKWDWEKIIEEIQKDGHGSVQNLPFVPEAIRKVFLCAHDVHPLDHVRMQGAVQRAFDA 1552

Query: 869  ---QAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
                A S++  ++ P+   ++ +   Y +A+  G K     R  S
Sbjct: 1553 EGYAANSISKTINLPNHAAVEDVEAAYTEAYRTGCKGITVYRDGS 1597


>gi|307717949|ref|YP_003873481.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
 gi|306531674|gb|ADN01208.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
          Length = 1120

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 212/540 (39%), Gaps = 113/540 (20%)

Query: 366 PQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+  V DDL G   I  AL   A + KY  G G++++ +R  G  + G  G S 
Sbjct: 166 PQPHACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPLSG-GGMSS 224

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLET----------WHIDVE----------- 460
           G++ FLKV + +A A+  GG  R+ A    L+           W ++ E           
Sbjct: 225 GLMSFLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILTFVRWKVEEEYKVASLVAGSR 284

Query: 461 -------EFLDLRKNTGD----DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
                  E L   ++ GD      R          +P+ F+ +V + A   +  P+E   
Sbjct: 285 LVARHAREILSAYRSEGDVGAAAVRDAVGRALEAGVPEQFVHQVLRLAEEGM-GPEEFP- 342

Query: 510 LHDLYGKEFEI-AYENYERQADRGEIKV------------------------FRKISAVA 544
              +Y  ++E  AY     Q+    ++V                         R + A  
Sbjct: 343 ---VYTTDWEGEAYATVSGQSSNNSVRVPHEFMLAVQEDREWPLTARTTGEVVRTVRARD 399

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW +++   +    P + F    N        G + +SN C+E       ++TA CNL S
Sbjct: 400 LWNEIVLAAWRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMF---LDDTA-CNLAS 455

Query: 605 INLLAHF--ANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           +NLLA +     +FD +     +     +L+ +V+     + E A++S + +R +GLG  
Sbjct: 456 LNLLAFYDEEEGRFDVESFVHAVDIWTLILEISVVMAQFPSAEVARRS-YLYRTLGLGFA 514

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------- 713
              S L ++ +PY S E   +A      ++  A   S  +A E G +  F+         
Sbjct: 515 NLGSLLMVMGLPYDSEEGRAVAGAIAAIMTGRAYHMSARMAAEWGPFPRFEANREHMLRV 574

Query: 714 -------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                              S+   G+ P  + G L E         T+R  WDE  +  +
Sbjct: 575 IRNHARAARHAPPEEYEGLSVTPMGLDPDHTPGYLLE---------TARRVWDEALEWGE 625

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ 812
             G RN+   AIAPT TI  +    +  I+P Y  +  K    G  F ++N  +   L++
Sbjct: 626 RHGFRNAQVSAIAPTGTIGLLMDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALRR 685


>gi|288957136|ref|YP_003447477.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
 gi|288909444|dbj|BAI70933.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
          Length = 1250

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 120/529 (22%), Positives = 213/529 (40%), Gaps = 83/529 (15%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLAG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D + N        
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVTVDMDHPDIEGYIDWKVNEEQKVAAL 307

Query: 469 -------------------TGDDRRRTHDMNTA------NWIPDLFMKRVTQNAG----- 498
                              +G D +   ++  A      + + + +++RV Q AG     
Sbjct: 308 VTGSKICQKHLTAVMAAAQSGLDPKENKELKKAILAARKDQVSENYIQRVIQFAGQGFTS 367

Query: 499 --WTLFSPDEVSDLH-DLYGK----EFEIAYENYERQAD--------RGEIKVFRKISAV 543
             +  ++ D  S+ +  + G+       I+ E  +   D        R   KV + + A 
Sbjct: 368 IEFKTYNTDWDSEAYLTVSGQNSNNSVRISNEFVQAVLDDADWNLIGRTNGKVVKTVRAR 427

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW K+    +    P + F    N        G +++SN C+E       ++TA CNL 
Sbjct: 428 DLWDKVGYAAWACADPGVQFDSTINEWHTCPASGRINASNPCSEYMF---LDDTA-CNLA 483

Query: 604 SINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL++    +  FD +      R    VL+  + +     ++  + ++  R +GLG   
Sbjct: 484 SLNLMSFRLKDGSFDVEAFEHACRLWTIVLEISVLMAQFPSKEIAQLSYEFRTLGLGFAN 543

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---------- 712
               L    + Y S E           ++  A + S E+AQE G +  F+          
Sbjct: 544 LGGLLMASGLSYDSDEGRAYCAGISAVMTGVAYATSAEMAQELGTFPGFEANRDHMLRVI 603

Query: 713 --------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
                   G +       ++ +  +A++  +  +   +   WDE  +  +  G RN+   
Sbjct: 604 RNHRRAANGEMNGYEGLAVEPVPFVADLCPDQELALAAVRVWDEALELGEAHGFRNAQAT 663

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
            +APT TI  +    +  I+P +  +  K    G  F +VN  +   LK
Sbjct: 664 VVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIVNRLVPEALK 712


>gi|134098345|ref|YP_001104006.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910968|emb|CAM01081.1| ribonucleoside diphosphate reductase,B12-dependent
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 922

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 136/594 (22%), Positives = 240/594 (40%), Gaps = 42/594 (7%)

Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 115 FSFNSPVWFNVGTSSRQQVSACFILSVDDTMESILNWYKEEGLIFKGGSGAGLNLSRIRS 174

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ +  
Sbjct: 175 -SRELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKAK 233

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL          QNA  ++   DE     +  GK F +    
Sbjct: 234 ---EEHKIRALRDAGFDMDLGGADSASVQYQNANNSVRVSDEFMRAVESDGK-FGLR--- 286

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R +  V   + A  L+RK+    +E   P I + D  N        G + +SN 
Sbjct: 287 -----SRTDGSVIESVGARELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNP 341

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NL+     +  FD +    T+   +  +D  I      
Sbjct: 342 CSEYMHLDNSS-----CNLASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFP 396

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E    +    R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 397 TEAIGDTTRKFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELA 456

Query: 703 QERGAYSSF-KGSLWDQGVFPIDSIG---LLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
              G Y  + + +   Q V    +     +    ++++A+++ +   W E  +     G 
Sbjct: 457 GAVGPYEGYARNADAHQRVMRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGW 516

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLW 816
           RN+    +APT TI  +    +  I+P    +  K  +  G   +VN  +   LK     
Sbjct: 517 RNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQ 576

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQ 869
            E + + ++Y     G++   P  L+  H   F+       I PM  +   +  Q ++  
Sbjct: 577 QEQIEAVVEYI-AEHGHVVDAP-GLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSG 634

Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           A S  + + E  S   ++ IY + W +GLK     R         S  KG  G+
Sbjct: 635 AISKTVNMPESASVADVEEIYFEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGE 688


>gi|331695964|ref|YP_004332203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950653|gb|AEA24350.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
          Length = 954

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 134/580 (23%), Positives = 236/580 (40%), Gaps = 51/580 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 151 FSFNSPVWFNVGTSSPQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ +  
Sbjct: 211 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKAK 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL    +T    QNA  ++     V+D       EF  A E 
Sbjct: 270 ---EEAKVRVLRDAGFDMDLGGADITSVQYQNANNSV----RVTD-------EFMRAVEE 315

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 RG +  +V   + A  L+R +    +E   P I +    N        G + +S
Sbjct: 316 GTSFGLRGRMTGEVIDSVDARTLFRGIAQAAWECADPGIQYDGTINDWHTTPESGRITAS 375

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NLL    ++  FD ++    +   +  +D  I    
Sbjct: 376 NPCSEYMHLDNSS-----CNLASLNLLTFLGDDGMFDAERFRRAVEFIITAMDISICFAD 430

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              E    +    R +G+G     + L      Y S     +A      ++  A   S E
Sbjct: 431 FPTEPIGDTTRKFRQLGIGYANLGALLMATGHAYDSEGGRALAASITSLMTGAAYKRSAE 490

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIG 757
           LA   G Y  +  +                +VR   A   ++R + + W E     +  G
Sbjct: 491 LAGVVGPYEGYARNAEGHQRVMRKHAAANDDVRTLAASTHIHRLATITWKECLAIGERNG 550

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQ--- 812
            RN+    +APT TI  +    +  I+P    +  K  +  G   +VN  +   L++   
Sbjct: 551 WRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALQKLGY 610

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
           +    EA++  +  H    G++   P  L+  H   F+       I PM  +   +  Q 
Sbjct: 611 QAEQAEAIVEYVAEH----GHVIDAP-GLRTEHYEVFDCAMGERSIAPMGHVRMMAAVQP 665

Query: 866 WIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
           ++  A S  + + E +  + ++ IY + W +GLK     R
Sbjct: 666 FLSGAISKTVNMPEAASVEDVERIYMEGWKLGLKALAIYR 705


>gi|319645697|ref|ZP_07999928.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392244|gb|EFV73040.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 401

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 172/393 (43%), Gaps = 63/393 (16%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TL 590
           +K +A  L  K+  +  E+G+P++ F D  N      H+ +V  SNLC+E+       T 
Sbjct: 36  KKANARKLLEKLAILRSESGYPYLMFTDNVNRFHANSHISMVKFSNLCSEVLQSSKVSTY 95

Query: 591 NSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIE 644
               EE  +     CNLGSIN+     N     D + +T++ A+  L +V +  N     
Sbjct: 96  TDYGEEDDIGLDISCNLGSINIFNVMKN-----DSIKNTVKLAIDALTHVSNKTNITNAP 150

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              K+N   R++GLG M     L    I Y S EA + A+     ++F+++  S+E+A+E
Sbjct: 151 AVAKANKLMRSVGLGAMNLHGFLAQNGIAYESEEARDFANTFFMMMNFYSLERSMEIAKE 210

Query: 705 RG-AYSSFKGSLWDQGVF--PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIG 757
            G  Y  F+GS +  G +    +      +      +     +P    W +LK+ V   G
Sbjct: 211 AGETYYQFEGSTYKSGEYFKKYEEQSFSPKYEKVKKLFGDQHIPTIEDWKKLKQAVMKYG 270

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           + +S   AIAPT +I+                YV+S+ +G   +     +  +++R    
Sbjct: 271 LYHSYRQAIAPTGSIS----------------YVQSSTAGVMPI-----MERIEERTY-- 307

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                      G+      +P    K    +  A+++D   +++  +  Q+ +DQ  S  
Sbjct: 308 -----------GNSKTYYPMPGLSAKNWFFYKEAYDMDMFKVVDMIATIQQHVDQGISFT 356

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 357 LFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 389


>gi|291006953|ref|ZP_06564926.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 943

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 136/594 (22%), Positives = 240/594 (40%), Gaps = 42/594 (7%)

Query: 351 FMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 136 FSFNSPVWFNVGTSSRQQVSACFILSVDDTMESILNWYKEEGLIFKGGSGAGLNLSRIRS 195

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF++ +  
Sbjct: 196 -SRELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKAK 254

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL          QNA  ++   DE     +  GK F +    
Sbjct: 255 ---EEHKIRALRDAGFDMDLGGADSASVQYQNANNSVRVSDEFMRAVESDGK-FGLR--- 307

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R +  V   + A  L+RK+    +E   P I + D  N        G + +SN 
Sbjct: 308 -----SRTDGSVIESVGARELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNP 362

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NL+     +  FD +    T+   +  +D  I      
Sbjct: 363 CSEYMHLDNSS-----CNLASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFP 417

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E    +    R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 418 TEAIGDTTRKFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELA 477

Query: 703 QERGAYSSF-KGSLWDQGVFPIDSIG---LLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
              G Y  + + +   Q V    +     +    ++++A+++ +   W E  +     G 
Sbjct: 478 GAVGPYEGYARNADAHQRVMRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGW 537

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLW 816
           RN+    +APT TI  +    +  I+P    +  K  +  G   +VN  +   LK     
Sbjct: 538 RNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQ 597

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQ 869
            E + + ++Y     G++   P  L+  H   F+       I PM  +   +  Q ++  
Sbjct: 598 QEQIEAVVEYI-AEHGHVVDAP-GLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSG 655

Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           A S  + + E  S   ++ IY + W +GLK     R         S  KG  G+
Sbjct: 656 AISKTVNMPESASVADVEEIYFEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGE 709


>gi|325000219|ref|ZP_08121331.1| vitamin B12-dependent ribonucleotide reductase [Pseudonocardia sp.
           P1]
          Length = 964

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 139/602 (23%), Positives = 245/602 (40%), Gaps = 53/602 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 161 FSFNSPVWFNVGTPSPQQVSACFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 220

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DVEEF++ +  
Sbjct: 221 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEEFVETKAK 279

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL    +T    QNA  ++   DE       + +  E   E 
Sbjct: 280 ---EEAKVRVLRDAGFDMDLGGSDITSVQYQNANNSIRVSDE-------FMRAVEEDTEF 329

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R    GE  V   + A  L+  +    +    P I +    N        G + +SN 
Sbjct: 330 GLRARMTGE--VIDTVDARKLFHGIAEAAWNCADPGIQYDGTINDWHTCPESGRITASNP 387

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NLL    A+++FD +  A  +   +  +D  I      
Sbjct: 388 CSEYMHLDNSS-----CNLASLNLLKFLDADDRFDAETFAKAVELIITAMDISICFADFP 442

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +    +    R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 443 TDPIADTTRKFRQLGIGYANLGALLMATGHAYDSEGGRALAGAITSLMTGAAYKRSAELA 502

Query: 703 QERGAYSSF-KGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              G Y  + + +   Q V        D I   A      A+ + + L W + ++  +  
Sbjct: 503 GVVGPYEGYARNAEAHQRVIRKHAAANDGIRTFAA---STAIQKLATLTWKQCQEIGEAN 559

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVNSFL---VNELK 811
           G RN+    +APT TI  +    +  I+P    +  K  +  G   +VN  +   ++ L 
Sbjct: 560 GWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQSVRRALDNLG 619

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQ 864
            +    EA++  +  H    G++   P  ++  H   F+       I PM  +   +  Q
Sbjct: 620 YQAEQAEAIVEYVAEH----GHVVDAP-GMRPEHYEVFDCAMGERSIAPMGHVRMMAAAQ 674

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            ++  A S  + + E  + + ++ IY + W +GLK     R         S  KG  G+ 
Sbjct: 675 PFLSGAISKTVNMPERATVEDVERIYLEGWRLGLKALAIYRDNCKVGQPLSAGKGGSGEK 734

Query: 924 NA 925
            A
Sbjct: 735 TA 736


>gi|39936042|ref|NP_948318.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39649896|emb|CAE28418.1| ribonucleotide reductase [Rhodopseudomonas palustris CGA009]
          Length = 1257

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 135/594 (22%), Positives = 234/594 (39%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 308 VTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQF 367

Query: 497 A-------GWTLFSPDEVSDLHDLYGKEFEIAYEN--------------YERQAD----- 530
           A        + ++  D  S+ +        +A +N               E   D     
Sbjct: 368 AKQGYKEIDFPIYDTDWDSEAY------LTVAGQNSNNSVSLKDDFLRAVETDGDWHLTA 421

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+ T  + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLLA +    N+FD D      R    VL+  + +     ++  +
Sbjct: 482 ---LDDTA-CNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEVSVLMAQFPSKQIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + + Y S E   +       ++  A + S E+A + GA+
Sbjct: 538 LSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAF 597

Query: 709 SSFKGSLWDQGVFPIDSIGLLA----EVRDELAMNRT---------------SRLPWDEL 749
             +K +  D  +  I +    A     V + L++N                 ++  WD+ 
Sbjct: 598 PGYKKNA-DHMLRVIRNHRRAAHGESRVYEALSVNPVPLDHTNCPIPDAVAHAKAAWDKA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLV 807
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + 
Sbjct: 657 LELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             L+    + E  I +++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 717 AALRVLG-YPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769


>gi|192291697|ref|YP_001992302.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192285446|gb|ACF01827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris TIE-1]
          Length = 1257

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 135/594 (22%), Positives = 234/594 (39%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 308 VTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQF 367

Query: 497 A-------GWTLFSPDEVSDLHDLYGKEFEIAYEN--------------YERQAD----- 530
           A        + ++  D  S+ +        +A +N               E   D     
Sbjct: 368 AKQGYKEIDFPIYDTDWDSEAY------LTVAGQNSNNSVSLKDDFLRAVETDGDWHLTA 421

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+ T  + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLLA +    N+FD D      R    VL+  + +     ++  +
Sbjct: 482 ---LDDTA-CNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEVSVLMAQFPSKQIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + + Y S E   +       ++  A + S E+A + GA+
Sbjct: 538 LSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAF 597

Query: 709 SSFKGSLWDQGVFPIDSIGLLA----EVRDELAMNRT---------------SRLPWDEL 749
             +K +  D  +  I +    A     V + L++N                 ++  WD+ 
Sbjct: 598 PGYKKNA-DHMLRVIRNHRRAAHGESRVYEALSVNPVPLDHTNCPIPDAVAHAKAAWDKA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLV 807
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + 
Sbjct: 657 LELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             L+    + E  I +++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 717 AALRVLG-YPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769


>gi|55980044|ref|YP_143341.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
 gi|55771457|dbj|BAD69898.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
          Length = 2202

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 55/285 (19%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            C EI L         C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   + 
Sbjct: 1295 CGEIPLTVGEP----CDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFALP 1350

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + +    R +GLGLMG   AL  + +PY S EA     E +  +   AI AS  LA+E
Sbjct: 1351 DNEMAAKKLRRLGLGLMGLADALIKMGLPYDSEEARRKVYEIVSAMREEAIRASEALAEE 1410

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM---RNS 761
            RG              FP+                      ++E ++  +++G+   RN 
Sbjct: 1411 RGP-------------FPL----------------------YEEHREYFQSLGIKPRRNV 1435

Query: 762  NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL----------K 811
              + +APT T + + GVS  I+P +   +V   + G++  +   L  EL           
Sbjct: 1436 ALLTVAPTGTTSMLMGVSSGIEPVFSP-FVWRRIGGEYKPLLHPLFVELMEAYPPAPGFA 1494

Query: 812  QRDLWD-EAMISDL-KYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +   WD E ++ ++ K   GS+ N+  +P+ ++++  +A +I P+
Sbjct: 1495 KEGKWDWEKIVEEIQKDGHGSVQNLPFVPEAIRRVFLSAHDIHPL 1539


>gi|86158038|ref|YP_464823.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774549|gb|ABC81386.1| ribonucleoside diphosphate reductase, B12-dependent
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 925

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 140/630 (22%), Positives = 239/630 (37%), Gaps = 97/630 (15%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN G   HPQ S+CF+  V D +  I  
Sbjct: 116 GYFTTEADAATFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     + G  G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKN----------TGDD-----RRRTHD------MNTAN 483
           + A    L+  H DV EF++ + +           G D     R   +D       N + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D FM+ V ++  W L +                           R + +    I A 
Sbjct: 295 RVTDAFMRAVLEDREWKLTA---------------------------RTDGEALETIRAR 327

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L R++    +  G P + F    N   P  +   +++SN C+E      S     CNL 
Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMFLDDS----ACNLA 383

Query: 604 SINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           S+NL+ HF +    FD +     +   +   + ++    +      K++  +R +GLG  
Sbjct: 384 SLNLM-HFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYA 442

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-------FKGS 714
              + L    +PY S      A      ++  A + S  +A   G ++        F G 
Sbjct: 443 NLGALLMASGLPYDSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGV 502

Query: 715 LWD--QGVFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           +    Q V  +D      GLL+  RD           W +  ++    G RN     +AP
Sbjct: 503 IRKHAQHVDLVDPTLVEPGLLSAARDA----------WGDALRQGMESGYRNGQVTVLAP 552

Query: 769 TATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T TI  +    +  I+P    + Y K    G   +VN+ +   L++     E + S L++
Sbjct: 553 TGTIGFMMDCDTTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQKLGYSSEEITSVLQF 612

Query: 827 HDGSIGNIERIPDDLKKIHATAFE-----------IDPMWLIESASRRQKWIDQAQSLNL 875
            D  +  IE  P  L+  HA  F+           I  M  I      Q ++  A S  +
Sbjct: 613 ID-EVETIEGAP-GLRPEHAPVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTV 670

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +    + + ++  Y ++W +GLK     R
Sbjct: 671 NMPTSATPQDIENAYLESWKLGLKAVAIYR 700


>gi|313903475|ref|ZP_07836866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466296|gb|EFR61819.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
          Length = 1272

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 138/319 (43%), Gaps = 51/319 (15%)

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAI 656
            VCNLG+INL A     + D + L  T+  AVR LDNVID   +   E  K   +  R I
Sbjct: 686 GVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYGVRRI 745

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG MG    L  L + Y S +A E+ D+    I   A   S  LAQE+G +  F    +
Sbjct: 746 GLGTMGLADMLIKLGVRYGSEKAFEVCDQVYRLIRDEAYRVSALLAQEKGPFPLFDREKY 805

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            QG F                     RLP +++++ +   G+RN   +  APT T + + 
Sbjct: 806 LQGWF-------------------IQRLP-EDIRQLIAQHGIRNGFLLTQAPTGTTSLLA 845

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P +   + +++ +G   V                        YH+     +E+
Sbjct: 846 GVSSGIEPVFAFSFKRTDRTGTHIV------------------------YHELYKEWLEK 881

Query: 837 IPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQA 892
            PD+ +     +A ++ P   +   +  Q+++D   S++  ++ P    +D +   YR A
Sbjct: 882 HPDEPVPDYFVSADQLTPEEHVRMQAVIQQYVD--ASISKTVNAPREHTVDQVRTLYRLA 939

Query: 893 WLMGLKTTYYLRSRSATSV 911
           + +G K   Y R  S   V
Sbjct: 940 YELGCKGITYYRDGSREGV 958



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 41/293 (13%)

Query: 300 ILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCS 354
           +  DRY     +G  +E  P+  + RVA  +A  E E ++R V    F   L  F F+  
Sbjct: 10  VFLDRYARKGPDGKPVESSPEEMWDRVARAIAEVE-EPDRREVWERRFRQALDGFKFVPG 68

Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
              L  +GT +     +C++   P+D   GI   +     +    GG+G + + +R  G 
Sbjct: 69  GRILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGT 128

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           ++ G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D
Sbjct: 129 YVKGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----D 184

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             +  + N +  I D FM+ V Q+  W L                             + 
Sbjct: 185 LTKITNANLSVCISDAFMEAVQQDLPWDL-----------------------------KW 215

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C
Sbjct: 216 NGKVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPC 268


>gi|85715492|ref|ZP_01046473.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85697687|gb|EAQ35563.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 1248

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 128/596 (21%), Positives = 235/596 (39%), Gaps = 91/596 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKMTKSKSAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  + G  G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+++D +
Sbjct: 239 RGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQYIDWK 297

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 298 VKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFVPEKNPALRREIKLARRAQVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLH-DLYGKEFEIAY---ENYERQAD----- 530
           D ++KRV Q A        + ++  D  S+ +  + G+    +    +++ R  +     
Sbjct: 358 DNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW 417

Query: 531 ----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 418 NLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E       ++TA CNL S NL+  +  A+ +FD D    T+R    VL+  + +     +
Sbjct: 478 EYMF---LDDTA-CNLASANLITFYDTASRRFDVDAYEHTVRLWTVVLEISVLMAQFPSK 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 534 AIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALTAIMTGIAYKTSAEMAGE 593

Query: 705 RGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+   K                  G         ++ + L      +  +   +   W
Sbjct: 594 LGAFPGHKKNAGHMLRVIRNHRRAAHGQSNGYEALAVNPVPLDHASCPQANLIAHATRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            V E  +   + E+ I++++ +    G++   P  ++  + A  F  + +  +E A
Sbjct: 714 AVPEALRALGYRESEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVEKA 769


>gi|32477697|ref|NP_870691.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica SH 1]
 gi|81658769|sp|Q7UI46|NRDJ_RHOBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|32448251|emb|CAD77768.1| ribonucleotide reductase [Rhodopirellula baltica SH 1]
          Length = 1040

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 185/423 (43%), Gaps = 35/423 (8%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+ +V D++  I       AML K+  G G D + +R     + G  G   G 
Sbjct: 208 YPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTDLSTIRSQREKLSG-GGTPSGP 266

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM---- 479
           + F++V +  A  V  GGK R+ A    L+ WH D+ EF++ +     + ++ H +    
Sbjct: 267 LSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEFIECKWA---EEKKAHALIREG 323

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ--ADRGEIKVF 537
             +N+  + +     QNA  ++        L D Y  E     EN++ +   D+   +  
Sbjct: 324 YDSNFNGEAYASVCFQNANLSV-------RLTDDY-MEAVRKNENFQTRWITDKPTTEPP 375

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
             + A  L  KM    +  G P + +    N      + G +++SN C+E       ++T
Sbjct: 376 SYV-AKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINASNPCSEYMF---LDDT 431

Query: 598 AVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           A CNL SINL+     +  FD+++  +  RT     + ++D   +  E   +++H  R +
Sbjct: 432 A-CNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASYPTEPIARNSHKFRPL 490

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG     S +    +PY S  A  +       +   A   S ELA   G   +F G + 
Sbjct: 491 GLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAELASVVG---TFDGYVE 547

Query: 717 DQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++    +  + +  +  D++       +   +R  WD + +  +  G RN+    +APT 
Sbjct: 548 NEAPM-LRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFRNAQATVLAPTG 606

Query: 771 TIA 773
           TI+
Sbjct: 607 TIS 609


>gi|328543988|ref|YP_004304097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [polymorphum gilvum SL003B-26A1]
 gi|326413732|gb|ADZ70795.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Polymorphum gilvum SL003B-26A1]
          Length = 1004

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 135/565 (23%), Positives = 212/565 (37%), Gaps = 93/565 (16%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHI-H 415
            S    PQ+ +  + +V DDL G  G +      A L KY  G G +++ +RG G  + H
Sbjct: 188 TSAYERPQVHASIILSVKDDLVGDNGIMDLWVREARLFKYGSGTGTNFSAIRGAGEPLDH 247

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDD-- 472
           G  GKS G++ FLKV +  A ++  GG  R  A    ++  H D+E+F+D +    +   
Sbjct: 248 G--GKSAGLLSFLKVGDAAAGSLRSGGTTRAAAKMVVVDIDHPDIEDFIDWKVKEEEKVA 305

Query: 473 ----------RR--------------------------RTHDMNTANWIPDLFMKRVT-- 494
                     RR                          R  +   A  IPD +++RV   
Sbjct: 306 AIVAGSKMAARRLSRILEIVDAVEHHRYRDNAYKRELDRAIEEARAALIPDGYIERVIHF 365

Query: 495 --QNAGWTLFSPDEVSDLHDLY----GKEF-------EIAYENYERQA-----DRGEIKV 536
             Q  G   F   +V    D Y    G+         +   E  ER A      R + + 
Sbjct: 366 AEQGHGGLEFRTYDVDWDSDAYRTVSGQNANNSVRVPDAFLEAVERGAPWRLVQRTDPRK 425

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R++ A ALW K+    + +  P + F    N        G ++ SN C+E       ++
Sbjct: 426 GREVDARALWHKVAGAAWASADPGVQFDTTINAWHTCPRSGRINGSNSCSEFMF---LDD 482

Query: 597 TAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           TA C L S+NL+A   A+  F  D     +R     LD  I +  +      +    +R 
Sbjct: 483 TA-CPLASLNLMAFRDADGGFRVDDFRHAVRLWTLSLDISISMAQYPSRATARRTARYRP 541

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG       L  L IPY S             ++      S ELA E+G +  ++ + 
Sbjct: 542 IGLGYANLGGLLMSLGIPYDSDAGRAYCAAVTALLTGWTYRTSAELAAEQGPFEGYRANA 601

Query: 716 WD------------QGVFPIDSIGLLAEVRDELAMNRTSRLP--------WDELKKRVKT 755
                          G   + +   LA     L  +     P        WD+     + 
Sbjct: 602 AHMLRVIRNHRRAAHGTTQVSAYEGLATPPVPLGASACPDAPLHAAAVEAWDQALALGER 661

Query: 756 IGMRNSNCMAIAPTATIANI--CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +  C  +  I+P +  +  K    G F  + + +V    +R
Sbjct: 662 HGYRNAQASVIAPTGTIGLVMDCATT-GIEPDFALVKFKKLAGGGFFKIINGMVPTALRR 720

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             + E  + D+  H    G++E  P
Sbjct: 721 LGYAEHEVRDIVAHAVGHGSLELAP 745


>gi|258654101|ref|YP_003203257.1| vitamin B12-dependent ribonucleotide reductase [Nakamurella
           multipartita DSM 44233]
 gi|258557326|gb|ACV80268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nakamurella multipartita DSM 44233]
          Length = 988

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 135/584 (23%), Positives = 240/584 (41%), Gaps = 54/584 (9%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 151 FAFNSPVWFNVGTKSPQQVSACFILSVDDTMDSILNWYREEGLIFKGGSGAGLNLSRIRS 210

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ EF++ +  
Sbjct: 211 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIAEFVETKAR 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDE---VSDLHDLYGKEFEIA 521
              +  +   +  A +  DL    +     QNA  ++   DE     D     G  F + 
Sbjct: 270 ---EEHKIRVLRDAGFDMDLGGDDIISVQYQNANNSVRVSDEFMRAVDADTDEGASFGL- 325

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                R    GE  V   + A  L+ K+    +E   P I + D  N        G + +
Sbjct: 326 -----RARQTGE--VIETVDARELFGKITQAAWECADPGIQYDDTINDWHTSPESGRISA 378

Query: 582 SNLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E + L++SS     CNL S+NL+   + +  FD    A  +   +  +D  I   
Sbjct: 379 SNPCSEYMHLDNSS-----CNLASLNLMKFLSEDGTFDAPTFARAVEFVITAMDISICFA 433

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               +   ++   +R +G+G     + L      Y S     +A      ++  A   S 
Sbjct: 434 DFPTQPIAETTRAYRQLGIGYANLGALLMATGHAYDSEGGRSLAAAITSLMTGVAYRRSA 493

Query: 700 ELAQERGAYSSF-KGSLWDQGVFP--------IDSIGLLAEVRDELAMNRTSRLPWDELK 750
           ELA   G Y  + + +   + V          + SIG      ++ A+ + +   W +  
Sbjct: 494 ELAGVVGPYEGYARNADAHKRVIRKHAAANDYVRSIG-----GNDGAVLKLATTVWQDTV 548

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG-DFTVVNSFLVN 808
              +  G RN+    +APT TI  +    +  I+P    +  K  + G    +VN  +  
Sbjct: 549 AIGERNGYRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPG 608

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESAS 861
            LK      E++ + ++Y     G++   P  L++ H + F+       I PM  +   +
Sbjct: 609 ALKSLGYQAESIEAIVEYI-AEHGHVVDAPG-LRREHYSVFDCAMGERSIAPMGHVRMMA 666

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             Q +I  A S  + + E  +   +  IY+Q W MGLK     R
Sbjct: 667 AVQPFISGAISKTVNMPEHATVADVAEIYQQGWKMGLKALAIYR 710


>gi|297802304|ref|XP_002869036.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314872|gb|EFH45295.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 291

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 94/186 (50%), Gaps = 19/186 (10%)

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++P L+V N TA  V+QGG KRKG         H+ +  F         +  R  D+  
Sbjct: 5   GIVPVLRVFNATASYVDQGGGKRKGI--------HLTINPFFF----PFQEEHRARDLFY 52

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
             WIP LFM+RV  +  W+LF  +E   L D  G EFE  Y  YE      ++   ++  
Sbjct: 53  GLWIPYLFMERVQTDGQWSLFCSNEAPGLADCCGAEFEKLYTQYENVGKAKKVVQAQQ-- 110

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
              LW ++LT   +TG P++ FK     ++  +    + SSNLCTEI   +S  ETAVCN
Sbjct: 111 --QLWYEILTSQVKTGTPYMLFK--VRNKAINKICIPLMSSNLCTEIVEYTSPAETAVCN 166

Query: 602 LGSINL 607
           L SI L
Sbjct: 167 LASIVL 172



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HA+ +S E+A + GAY +++GS    GV    +  ++           + R  W  L  
Sbjct: 197 YHALKSSSEIATKEGAYETYQGS---PGVVQPATWSVIP----------SDRWDWAALMD 243

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    +RNS  +A+ PTA+ + I G ++  +P   N++ +  +   F
Sbjct: 244 MISKNVIRNSLLVALMPTASTSQILGNNECFEPYTSNVFSRRVLCNKF 291


>gi|327537908|gb|EGF24608.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica WH47]
          Length = 1040

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 214/504 (42%), Gaps = 43/504 (8%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +PQ S+CF+ +V D++  I       AML K+  G G D + +R     + G  G   G 
Sbjct: 208 YPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTDLSTIRSQREKLSG-GGTPSGP 266

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM---- 479
           + F++V +  A  V  GGK R+ A    L+ WH D+ EF++ +     + ++ H +    
Sbjct: 267 LSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEFIECKWA---EEKKAHALIREG 323

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA----DRGEIK 535
             +N+  + +     QNA  ++        L D Y    E   +N   Q     D+   +
Sbjct: 324 YDSNFNGEAYASVCFQNANLSV-------RLTDDY---MEAVRKNETFQTRWITDKPTTE 373

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
               + A  L  KM    +  G P + +    N      + G +++SN C+E       +
Sbjct: 374 PPSYV-AKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINASNPCSEYMF---LD 429

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL SINL+     +  FD+++  +  RT     + ++D   +  E   +++H  R
Sbjct: 430 DTA-CNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASYPTEPIARNSHKFR 488

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG     S +    +PY S  A  +       +   A   S ELA   G   +F G 
Sbjct: 489 PLGLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAELASVVG---TFDGY 545

Query: 715 LWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + ++    +  + +  +  D++       +   +R  WD + +  +  G RN+    +AP
Sbjct: 546 VENEAPM-LRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFRNAQATVLAP 604

Query: 769 TATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T TI+ +    +  I+P    + Y +    G   +VN  +   LK+     + +   LKY
Sbjct: 605 TGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNQTVKLGLKKLGYDADTIDEILKY 664

Query: 827 HDGSIGNIERIPDDLKKIHATAFE 850
            D +   IE  P  L+  H   F+
Sbjct: 665 VDAN-DTIEGAP-GLQDEHLAVFD 686


>gi|197104105|ref|YP_002129482.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
 gi|196477525|gb|ACG77053.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
          Length = 570

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 141/589 (23%), Positives = 226/589 (38%), Gaps = 92/589 (15%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI-----FGALQENAMLAKY 396
           F  LL  F F+        +G     L +CF+        G        AL+E     + 
Sbjct: 52  FRALLEDFRFLPGGRIQAGAGDPAAVLFNCFVLPAFGPGPGAEADRALDALREAVATLRA 111

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G D +     GA        + G + +L + +        G  R+GA+   L   H
Sbjct: 112 GGGVGCDVSGAPPAGAAAE-RGPPAPGPVGYLHLWDAACRVFLAGATRQGALMGALRCDH 170

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVE F   +   G   R     N +  + + FM  V  +A W L  P E          
Sbjct: 171 PDVEAFAAAKTAPGALSR----FNLSVAVTEAFMAAVAADADWPLRFPVETG-------- 218

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                              V R + A  LW ++L   +ETG P + F D  N  +P    
Sbjct: 219 ------------------PVVRTVRARGLWTRILRCAYETGDPGVLFIDRINAENPLAWR 260

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK------LASTIRTAVR 630
             + ++N C E+ L     +   C+LGS+NL   F    F  +       LA     AVR
Sbjct: 261 ERLAATNPCGEVPL----PDYGACDLGSLNLT-RFVAAPFTPEARLDLAGLAEAAAAAVR 315

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LD+VIDI+   +          R IGLG+ G   AL +L + Y    ++  A E+M  I
Sbjct: 316 LLDDVIDISAFPLAAQADEARATRRIGLGITGLADALVMLGLRYGEAASLRAAGEAMRTI 375

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS  LA+E+GA+ + +      G F                     RLP + L+
Sbjct: 376 RDAAYGASAGLAREKGAFPACEAERLLAGPF-------------------ARRLP-EPLR 415

Query: 751 KRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKS--NMSGDFTVVNSFLV 807
             +   G+RNS+ +A+AP  +I+ +  G+S  ++P +  +  ++     G+   V     
Sbjct: 416 AAIARHGLRNSHLLAVAPAGSISLLAGGISPGLEPIFAAVQERTLRTSPGETRAVR---- 471

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                   W  A ++  +   G           L    A A +I     ++  +  Q ++
Sbjct: 472 --------WTAASVALWRRATGEAAG-------LPPAFAAAHDIPADAHLDMQAALQPYV 516

Query: 868 DQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           DQA  +++N+ ++ P  +    IY  A   GLK     R   A  +  +
Sbjct: 517 DQAISKTVNVPVETPF-EDFARIYAGAHARGLKGCTAFRPARAQVIAAA 564


>gi|332087395|gb|EGI92523.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 258

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPD 378
           F  RV M     E      A++  + + S  F  +TPT  N G +   +L SCFL  + D
Sbjct: 13  FADRVTMVALTLEQGDATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 72

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     
Sbjct: 73  NMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 132

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA 
Sbjct: 133 NQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQ 192

Query: 499 WTLFSPDEVSDLHDLYGKEF 518
             LFSP    D+  +YGK F
Sbjct: 193 MALFSP---YDVERVYGKPF 209


>gi|254489336|ref|ZP_05102539.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214041843|gb|EEB82483.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 346

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 167/382 (43%), Gaps = 69/382 (18%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLGSINLLAH 610
           F+D  N  +P    G +  SNLC+EI  +N +S                CNLGS+N+   
Sbjct: 2   FEDTVNSANPIN--GRIAMSNLCSEILQVNEASTFHDDLGYDHLGTDISCNLGSLNIA-- 57

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D     +T+ T++RVL  V +++  +++   ++ N    AIGLG M     L  
Sbjct: 58  ---KTMDGPDFGATVETSIRVLTAVSEMSSINSVPSVRRGNDESHAIGLGQMNLHGYLAR 114

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF------- 721
             I Y S E VE        +++HAI AS  LAQE+   +  F  S +  G F       
Sbjct: 115 ERIHYGSAEGVEFTSVYFAAVTYHAIRASNLLAQEKDETFKDFATSTYASGAFFETYTTR 174

Query: 722 ----PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                 D++  L + +D       +R  W +L+  V   G+ N N  A+ PT +I+ I  
Sbjct: 175 DWLPESDAVKALFDGKD-----LPTREDWAKLRDLVMEHGLYNRNLQAVPPTGSISYINN 229

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P                     +V++++ R    E  I  + Y    + N    
Sbjct: 230 STSSIHP---------------------IVSKIEIRK---EGKIGRVYYPAPFMNN---- 261

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
            D+L+  +  A+EI P  +I++ +     +DQ  SL L+   + S + ++     AW  G
Sbjct: 262 -DNLE-FYRDAYEIGPEAIIDTYAAATTHVDQGLSLTLFFPADASTRDINRAQIYAWKKG 319

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY+R R  T++E + + G
Sbjct: 320 IKTIYYIRLRQ-TALEGTEVDG 340


>gi|153005059|ref|YP_001379384.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028632|gb|ABS26400.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 929

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 131/593 (22%), Positives = 230/593 (38%), Gaps = 77/593 (12%)

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN G   HPQ S+CF+ +V D +  I        ML KY  G G++ + +R    
Sbjct: 142 NSPVWFNVGVEEHPQCSACFINSVGDSMDSILRLAHTEGMLFKYGSGAGSNLSKIRSSKE 201

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLR----- 466
            + G  G++ G + F++  +  A  +  GGK R+ A    L+  H D+ EF+  +     
Sbjct: 202 RLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTRRAAKMVILDADHPDIGEFVSCKADEEK 260

Query: 467 ----------------KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
                           K    D     + N +  + D FM+ V  +  W L +    +D 
Sbjct: 261 KAWALIDAGYDGGFNVKGGAYDSVFFQNANHSIRVTDGFMRSVLDDRAWELTA---RTDG 317

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           H L                          I A  L R++    +  G P + F    N  
Sbjct: 318 HAL------------------------ESIRARDLMRQITEAAWLCGDPGMQFDTTINAW 353

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTA 628
                   +++SN C+E      S     CNL S+NL+ HF   +  FD +     +   
Sbjct: 354 HTCPATDRINASNPCSEYMFLDDS----ACNLASLNLM-HFRGIDGAFDVESFKRAVDLT 408

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V   + ++    +  E+  K++  +R +GLG     + L    +PY S      A     
Sbjct: 409 VLAQEILVSNAKYPTEQIGKNSEDYRPLGLGYANLGALLMASGLPYDSDGGRACAGAITA 468

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD-QGVFP--IDSIGLLAEVRDELAMNRTSRLP 745
            ++  A + S  +A+  G ++ ++ +     GV     + +  +     E  +   +R  
Sbjct: 469 LMTGEAYAMSARIAERMGPFAGYERNREPFLGVVRKHANHVDRIDPTFVERPLLDAARDA 528

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803
           W +  +     G RN+    +APT TI  +    +  I+P    + Y K    G   +VN
Sbjct: 529 WGDALRLGTQSGYRNAQLTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGVLKIVN 588

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------ID 852
           + +   L++     +A+ S L++ D  +  IE  P +L+  H   F+           I 
Sbjct: 589 NTVPLALQRLGYSADAIASTLEFID-KVETIEGAP-ELRDAHLPVFDCAFKPQNGTRSIH 646

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            M  I      Q ++  A S  + +  E +   ++  Y +AW +GLK     R
Sbjct: 647 YMGHIRMMGAVQPFLSGAISKTVNMPTEATPADIETAYLEAWKLGLKAIAVYR 699


>gi|315187551|gb|EFU21307.1| ribonucleoside-diphosphate reductase class II [Spirochaeta
           thermophila DSM 6578]
          Length = 1120

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 127/541 (23%), Positives = 210/541 (38%), Gaps = 113/541 (20%)

Query: 365 HPQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
            PQ  +CF+  V DDL G   I  AL   A + KY  G G++++ +R  G  + G  G S
Sbjct: 165 RPQPHACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPLSG-GGMS 223

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLET----------WHIDVE---------- 460
            G++ FLKV + +A A+  GG  R+ A    L+           W ++ E          
Sbjct: 224 SGLMSFLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILTFVRWKVEEEYKVASLVAGS 283

Query: 461 --------EFLDLRKNTGD----DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
                   E L   ++ GD      R          +P+ F+ +V + A   +  P+E  
Sbjct: 284 RLVARHAREILSAYRSEGDVAAGGVRDAVGRALEAGVPEQFVHQVLRLAEEGM-GPEEFP 342

Query: 509 DLHDLYGKEFEI-AYENYERQADRGEIKV------------------------FRKISAV 543
               +Y  ++E  AY     Q+    ++V                         R + A 
Sbjct: 343 ----VYTTDWEGEAYATVSGQSSNNSVRVSHEFMLAVQEDGEWPLTARTTGEVVRTVRAR 398

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW +++   +    P + F    N        G + +SN C+E       ++TA CNL 
Sbjct: 399 DLWNEIVLAAWRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMF---LDDTA-CNLA 454

Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAKKSNHTHRAIGLGL 660
           S+NLLA +     +FD D     +     +L+ +V+     + E A++S + +R +GLG 
Sbjct: 455 SLNLLAFYDEEEGRFDVDSFVHAVDIWTLILEISVVMAQFPSAEVARRS-YLYRTLGLGF 513

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG------- 713
               S L ++ +PY S E   +A      ++  A   S  +A E G +  F+        
Sbjct: 514 ANLGSLLMVMGLPYDSDEGRAVAGAITAIMTGRAYHMSARMAAEWGPFPRFEANREHMLR 573

Query: 714 --------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                               S+   G+ P  +   L E          +R  WDE  +  
Sbjct: 574 VVRNHARAARQAPPEEYEGLSVTPMGLDPGHTPDYLLE---------AARRVWDEALEWG 624

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+   AIAPT TI  +    +  I+P Y  +  K    G  F ++N  +   L+
Sbjct: 625 ERHGFRNAQVSAIAPTGTIGLLMDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALR 684

Query: 812 Q 812
           +
Sbjct: 685 R 685


>gi|27379385|ref|NP_770914.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|81737311|sp|Q89MB9|NRDJ_BRAJA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|27352536|dbj|BAC49539.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bradyrhizobium
           japonicum USDA 110]
          Length = 1254

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 129/593 (21%), Positives = 229/593 (38%), Gaps = 105/593 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIETYIDWKVKEEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +   + +PD ++KRV Q 
Sbjct: 308 VTGSKINQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRSLVPDNYIKRVIQ- 366

Query: 497 AGWTLFSPDEVSDLH-DLYGKEFE------IAYEN--------------YERQAD----- 530
                F+     D+  D+Y  +++      ++ +N               E   D     
Sbjct: 367 -----FAKQGYKDIQFDVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLNA 421

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTSKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLL  +  A   FD +      R    VL+  + +     +   +
Sbjct: 482 ---LDDTA-CNLASANLLTFYNVATKHFDVEGYEHLCRLWTVVLEISVMMAQFPSKAIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + +PY S E   +       ++      S E+A E G +
Sbjct: 538 LSYEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALTAVMTGITYKTSAEIAAELGTF 597

Query: 709 SSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +K                  G         ++ + L      +  +   ++  WD   
Sbjct: 598 PGYKKNAAHMLRVIRNHRRAAHGQSNGYEALSVNPVPLDLVSCPQADLVSHAQAAWDAAL 657

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
           +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +  
Sbjct: 658 ELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPA 717

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            L+    + E+ I++++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 718 ALRALG-YRESEIAEIEAYAVGHGSLSNAPGINASTLKAKGFTDEAIAKVEKA 769


>gi|114704434|ref|ZP_01437342.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
 gi|114539219|gb|EAU42339.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
          Length = 1331

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 133/568 (23%), Positives = 227/568 (39%), Gaps = 96/568 (16%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G
Sbjct: 190 DSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSFLRGEGEKLSG 249

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR--------- 466
             GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E +++ +         
Sbjct: 250 -GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYINWKVREEEKVAA 308

Query: 467 ---------KN--------------TGDD---------RRRTHDMNTANWIPDLFMKRVT 494
                    KN               GD          +R   D   A  +P+ ++KRV 
Sbjct: 309 LVTGSKTVAKNLKLILSACVNCEGPEGDCFDPNKNPALKRAVKDAKKAQ-VPENYVKRVI 367

Query: 495 QNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYENYE--RQADRGEI 534
           Q A  G+T     ++  D  S+ +  + G+          +F  A EN E  +   R + 
Sbjct: 368 QFARQGFTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVENDEEWKLIRRTDG 427

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW ++    + +  P + F    N        G + +SN C+E       
Sbjct: 428 KVHKTVKARELWDQIGYAAWASADPGLHFNTTMNDWHTCPAAGKIRASNPCSEYMF---L 484

Query: 595 EETAVCNLGSINLL----AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           ++TA CNL S+NLL    A     +FD        R    VL+  + +      +  + +
Sbjct: 485 DDTA-CNLASLNLLQFVDATSEAKRFDTASFEHATRLWTIVLEISVLMAQFPSREIARLS 543

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG       L    IPY S     I       ++  A   S E+A E G +  
Sbjct: 544 YDYRTLGLGFANIGGLLMSGGIPYDSRHGRAICGAISALMTGIAYKTSAEMAGELGTFPD 603

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +D + L      +  ++  ++  W E  + 
Sbjct: 604 YERNAEHMSRVIRNHARAAHGIANGYEKLAVDPVPLDHASLADKRLSTRAKAAWTEAVEL 663

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L
Sbjct: 664 GEKFGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEAL 723

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +    + EA I++++ +    GN+ + P
Sbjct: 724 RTLG-YSEAQIAEIEAYAVGHGNLNQAP 750


>gi|330859934|emb|CBX70264.1| hypothetical protein YEW_LG48160 [Yersinia enterocolitica W22703]
          Length = 367

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEM 316
           +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G R +E 
Sbjct: 69  VEEGYYEKEVLEKY-DFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 127

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT 375
            +     VA+ LA    +  +  VE    + +  F  +TPT  N G +   +L SCFL  
Sbjct: 128 YEDRVCMVALTLAAGNQQVARDLVE---EIITGRFQPATPTFLNCGKKQRGELVSCFLLR 184

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +K+  D  
Sbjct: 185 IEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAF 244

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 245 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKN 304

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           N    LFSP +V  ++ +   E  ++ E Y    D   I
Sbjct: 305 NEEMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDDKRI 342


>gi|294101134|ref|YP_003552992.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
 gi|293616114|gb|ADE56268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
          Length = 858

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 142/615 (23%), Positives = 246/615 (40%), Gaps = 117/615 (19%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR-GLGAHIH 415
           TL  S T++ QL +CF+  +PD + GIF ++++ ++++K+ GG+G ++  +R        
Sbjct: 140 TLLASKTKNQQLFACFVIDIPDSIEGIFDSVKDASIISKFGGGVGGNFGWLREKGAGING 199

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GT G++ G I F++  N     V QGGKR+ A+   L   H D+ +F+D +     +  +
Sbjct: 200 GTGGQASGPISFMETWNTMGSVVVQGGKRRAALMGMLFDNHPDIMDFIDAKT----EENK 255

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  + D  +K V +   + L S                           R +  
Sbjct: 256 LSYFNISVCVSDALLKAVEEEGDFPLIS---------------------------RIDGS 288

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-----PQQHVGVVHSSNLCTEITL 590
           V + + A  LW K+    ++ G P + F D  N  +     P+     + S+N C E  L
Sbjct: 289 VAKTVKAKDLWNKLSESAWKRGDPGVFFIDRANADNLLKLDPEWR---IESTNPCGEQPL 345

Query: 591 NSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            + +     CNLGSIN+ A   +      FD D     +  ++  LD VID   + + + 
Sbjct: 346 PNYTS----CNLGSINVEAFVTSKGGLPAFDTDGFVDQVYRSIYYLDLVIDACSYPLPRI 401

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++     R +GLG+MG   A  LL + Y      E      E ++  A+ A+ E+    G
Sbjct: 402 EERTKRIRPVGLGVMGLADAAILLGMRYGGERFDEYCTSLGESMAAAALCATEEIVSVIG 461

Query: 707 A------------YSSFKGSLWDQGVFPI---------DSIGLLAEVRD----------- 734
                        +  F+     + +F           D I L+A +R            
Sbjct: 462 KAPFDESHLVKDLFHKFRDETGQKELFTAEWLKSTTIEDIISLIALMRGSETVPYTLINA 521

Query: 735 -ELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            E  +N       +E   +VK +        +RNS  ++IAPT +I+ +   S  I+P++
Sbjct: 522 IESIVNNEGLGSEEERLAKVKDVLKALESGQIRNSRRLSIAPTGSISMLMDTSSGIEPNF 581

Query: 787 QNLYVKSNMSGDF------TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
              + +  +  D          +  L  EL Q +L     ISD  Y              
Sbjct: 582 AWTWTRRIIKKDGEGHELREFCHKLLSEELHQ-ELKQTGCISDPTY-------------- 626

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK- 898
                 TA++I     +       ++ID   S  + L   +  + +  +Y   + +G K 
Sbjct: 627 -----VTAYDISTDEHVAVTGIFSRYIDSGISKTVNLPYSADVEDVQKVYEMCYKLGTKG 681

Query: 899 -TTYYLRSRSATSVE 912
            T Y   SRSA  +E
Sbjct: 682 ITIYRDGSRSAQPIE 696


>gi|254489544|ref|ZP_05102747.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214042051|gb|EEB82691.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 342

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RV M         + +A+ F + + S  F  +TPT  N+G +   +L SCFL  + D++ 
Sbjct: 116 RVVMTALTLARGDQVQAMAFMHEILSGRFQPATPTFLNAGKQSRGELISCFLLRLEDNME 175

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+  D+    NQ 
Sbjct: 176 SIGRGINSALQLSKRGGGVALMLTNIREQGAPIKGIENQSSGVIPVMKLLEDSFSYANQL 235

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    L
Sbjct: 236 GARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 295

Query: 502 FSPDEVSDLHDL 513
           FSP +V  ++ L
Sbjct: 296 FSPHDVERVYGL 307


>gi|85704837|ref|ZP_01035938.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
 gi|85670655|gb|EAQ25515.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
          Length = 1131

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 35/268 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LTTVPD 378
           + R+A  LA+ E E E     F++ L  F F+ +      +GT R   L +CF + TVPD
Sbjct: 33  WRRIARALAVLEAEPEVWEDRFFHALEDFKFLPAGRITAGAGTARKVTLFNCFVMGTVPD 92

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           D+ GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V +     +
Sbjct: 93  DMGGIFDNLREAALTMQQGGGIGYDFSTIRPKGAEVKGVSADASGPLSFMDVWDAMCRTI 152

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              G R+GA+ A +   H D+E F+  +     D  R    N +  I D FM+ V  +  
Sbjct: 153 MSAGSRRGAMMATMRCDHPDIEAFIAAKS----DPARLRMFNLSVLITDAFMEAVKADGP 208

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L           ++G                   +V+  + A  LW +++   ++   
Sbjct: 209 WDL-----------VFGG------------------RVYHTVQARDLWNRIMQATYDYAE 239

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P + F D  N  +   +   + ++N C 
Sbjct: 240 PGVIFIDRINAANNLSYCETIAATNPCV 267



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 145/344 (42%), Gaps = 51/344 (14%)

Query: 598 AVCNLGSINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             C LGSINL A      F      D   L   +R AVR++DNV+D++   +        
Sbjct: 647 GACLLGSINL-ARLVTEPFATGARVDAAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQ 705

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+ G   AL ++ + Y S EAV+  +  +  I+  A  ASV+LA+E+GA+  F
Sbjct: 706 AKRRIGLGVTGLADALLMVGLRYGSDEAVQQTEAWLHAIARAAYLASVDLAREKGAFPLF 765

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                                RD    + T +   ++++  V   G+RN+   +IAPT T
Sbjct: 766 D--------------------RDAYLASGTMQAMDEDVRAAVAAHGIRNALLTSIAPTGT 805

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+   G VS  I+P +   Y +  +  D +     +V+   Q  +W + M  D       
Sbjct: 806 ISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVDYAVQ--MWRDRM-GDAPLPSYF 862

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIY 889
           +      P+D  K+ A A               QKW+D + S  +   E  S +    +Y
Sbjct: 863 VNAQTLPPEDHVKMQAAA---------------QKWVDSSISKTINCPEDISFEAFKNVY 907

Query: 890 RQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVPVT 929
            QAW +G K     R    T    SV +++ K        +PVT
Sbjct: 908 LQAWDLGCKGCTTYRPNDVTGSVLSVSETSDKVPGETRGDIPVT 951


>gi|75675763|ref|YP_318184.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74420633|gb|ABA04832.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           winogradskyi Nb-255]
          Length = 1265

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 128/596 (21%), Positives = 233/596 (39%), Gaps = 91/596 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKLTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  + G  G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+++D +
Sbjct: 239 RGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQYIDWK 297

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 298 VKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFLPEKNPALRREIKLARRAQVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLH-DLYGKEFEIAY---ENYERQAD----- 530
           D ++KRV Q A        + ++  D  S+ +  + G+    +    +++ R  +     
Sbjct: 358 DNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW 417

Query: 531 ----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 418 NLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E       ++TA CNL S NL+  +  A+ QFD +    T+R    VL+  + +     +
Sbjct: 478 EYMF---LDDTA-CNLASANLITFYDTASKQFDVEAYEHTVRLWTVVLEISVLMAQFPSK 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 534 AIAALSYEFRTLGLGFANIGGLLMTMGLSYDSREGRALCGALSAIMTGIAYRTSAEMAGE 593

Query: 705 RGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+   K                  G         ++ + L      +  +   +   W
Sbjct: 594 LGAFPGHKKNAGHMLRVIRNHRRAAHGQAHGYEALAVNPVPLDHASCPQADLIAHATRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            V E  +   + E+ I++++ +    G +   P  ++  + A  F  + +  +E A
Sbjct: 714 AVPEALRALGYRESEIAEIEAYAVGHGLLSNAPGINVSTLKAKGFTDEAIAKVEKA 769


>gi|168056527|ref|XP_001780271.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668325|gb|EDQ54935.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 1/119 (0%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLKKI+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVD 60

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+   K T+
Sbjct: 61  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTM 119


>gi|117928683|ref|YP_873234.1| vitamin B12-dependent ribonucleotide reductase [Acidothermus
           cellulolyticus 11B]
 gi|117649146|gb|ABK53248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidothermus cellulolyticus 11B]
          Length = 1098

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 133/610 (21%), Positives = 242/610 (39%), Gaps = 88/610 (14%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A++   ++  +     +    + G R   + +CF+ +V D +  I    +E  ++ K   
Sbjct: 281 AIDELGVMPVYDIQTESGEYLSDGIR---VHNCFILSVDDTMESILDWYKEEGLIFKGGS 337

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHI 457
           G G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H 
Sbjct: 338 GAGVNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHP 396

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEF++ +                  + +    RV ++AG+ +          DL G++
Sbjct: 397 DIEEFIETK------------------VREEEKIRVLRDAGFDM----------DLGGRD 428

Query: 518 -FEIAYEN----------YERQADRGEI---------KVFRKISAVALWRKMLTMLFETG 557
            + + Y+N          + R  +RGE          +V   + A  L+RKM    +   
Sbjct: 429 LYSVQYQNANNSVRVSDEFMRAVERGESFGLRARTTGEVIETVDARKLFRKMAEAAWACA 488

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-Q 615
            P I + D  N        G + +SN C+E + L++SS     CNL S+NL+    ++ +
Sbjct: 489 DPGIQYDDTINDWHTCPESGRITASNPCSEYMHLDNSS-----CNLASLNLMKFLTDDGR 543

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD D     +   +  +D  I       EK   +    R +G+G     + L      Y 
Sbjct: 544 FDIDTFIKVVELVITAMDISICFADFPTEKIADTTRRFRQLGIGYANLGALLMATGHAYD 603

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------LWDQGVFPIDSIGLL 729
           S     +A      ++  A   S ELA   G Y  +  +      +  +     D++  +
Sbjct: 604 SDGGRALAAAITSLMTATAYKRSAELAAIVGPYDGYARNAEAHKRVMRKHAAASDALRTI 663

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQ 787
            E+ D     R  ++ W E     +  G RNS    +APT TI  A  C  +  I+P   
Sbjct: 664 GEM-DRAIAERACQM-WRECLTLGEQHGWRNSQASVLAPTGTIGLAMDCDTT-GIEPDLA 720

Query: 788 NLYVKSNM-SGDFTVVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKK 843
            +  K  +  G   +VN  +   L+     +   EA++  +  H   +G        L+ 
Sbjct: 721 LVKFKKLVGGGSMQIVNRTVPRALRTLGYPEEQVEAIVEYISEHGSVVG-----APGLRP 775

Query: 844 IHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLM 895
            H   F+       I PM  +   +  Q +I  A S  + + E +  + ++ IY Q W +
Sbjct: 776 EHYEVFDCAMGDRAISPMGHVRMMAAVQPFISGAISKTVNMPESATVEDVEEIYFQGWKL 835

Query: 896 GLKTTYYLRS 905
           GLK     R+
Sbjct: 836 GLKALAIYRN 845


>gi|169831430|ref|YP_001717412.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638274|gb|ACA59780.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 1121

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 48/334 (14%)

Query: 600 CNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           C LGS+NL       +     D++ L  T+R  +R LDN+ID+  + +E   ++    R 
Sbjct: 655 CLLGSVNLARMLKPGRDGYVVDWELLRDTVRLGIRFLDNLIDVAEYPLEFIAEATRATRK 714

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G    L  + +PY + E    A    + +   A++ S ELA ERG +       
Sbjct: 715 VGLGYTGLHDLLIKMGLPYDAEEGRRFAGTVFKAVQDAALAYSRELAGERGCFPE----- 769

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W++ VF                            +KR      RN+ C+ +APT ++  I
Sbjct: 770 WERSVF-------------------------HPHEKR------RNAACITVAPTGSVTTI 798

Query: 776 CGV-SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            G     I+P +   Y K ++++G F V +   +   ++  +  E M S++    G  G 
Sbjct: 799 AGCEGYGIEPIFAVAYTKDTDVAGSFEVFSPLFLEACERLGVSREVM-SEVARRGGCQG- 856

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
           +E +P +L +I   A EI P   I   +  QK++  A S  + L +  +   ++  YR A
Sbjct: 857 VEGVPPELARIFKGAQEISPRDHILMQAEVQKYVCNAVSKTINLPNSATIHDIETCYRLA 916

Query: 893 WLMGLKTTYYLR---SRSATSVEKSTLKGVDGKL 923
           + +GLK     R    +   +V +   K V G+L
Sbjct: 917 YELGLKGVTVFRDGCKQGVVTVGRKKRKPVPGEL 950



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 10/216 (4%)

Query: 297 GLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           G ++   RY       R+ E  +    R+A   AL E  +++ A E  F   +    F+ 
Sbjct: 11  GQKVFEARYAAKDEQGRVTETFEQAVHRLARTTALAEKAQDRAAWEEKFAASIGGLLFVP 70

Query: 354 STPTLFNSG-TRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           STP   N G T  P Q  +CF+  V D L  ++  L++ AM+ K  GG+G +++ +R  G
Sbjct: 71  STPIWANIGKTDRPWQPGACFVLAVEDSLESMYQTLKDTAMVFKSGGGVGYNFSAIRPRG 130

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G++ GV+  +++ + ++  V QGG R+GA    L   H ++  F++  K  GD
Sbjct: 131 SMVRSTKGQASGVVELIRLYDASSGMVMQGGVRRGASMGILNIDHPEIIHFIN-SKRGGD 189

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               TH  N +  + D FM+ + ++  W L    EV
Sbjct: 190 I---TH-FNLSVGVTDAFMEALERDEDWPLVFNGEV 221


>gi|78223118|ref|YP_384865.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194373|gb|ABB32140.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 232

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVEFYNLLSSFHFM 352
           L++L  RY L   NG  IE P+  F R+A  +A    L + +  +    F+ LLSS  F+
Sbjct: 8   LKVLKARYLLKDENGQIIETPEEMFERIARTVANTEKLYDGDTAQWEERFFTLLSSLRFL 67

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++  L N+G    QL++CF+  + D +  IF  L+  A++ +  GG G  ++ +R    
Sbjct: 68  PNSSALMNAGKPMGQLAACFVLPLEDSMQSIFDTLKNAALILQSGGGTGFSFSRLRPRAD 127

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ +++N    
Sbjct: 128 IVRSTGGIASGPVSFMKIFNTATDIIKQGGARRGANMGILHIDHPDILEFIRVKRNV--- 184

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            +   + N +  + D FM+ +     + + +P
Sbjct: 185 -QELANFNISVAVTDAFMEALHAKGEYQIVNP 215


>gi|209964247|ref|YP_002297162.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209957713|gb|ACI98349.1| B12-dependent ribonucleoside diphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 1246

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 137/574 (23%), Positives = 220/574 (38%), Gaps = 98/574 (17%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G  GKS
Sbjct: 193 HPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGEGEKLSG-GGKS 251

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN---------TGD 471
            G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +           TG 
Sbjct: 252 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVTVDLDHPDIEAYIDWKVAEEQKVAALVTGS 311

Query: 472 DRRRTH---------------------DMNTA----------NWIPDLFMKRVTQNAG-- 498
              R H                       N A            +P+ +++R  Q AG  
Sbjct: 312 KTVRKHLTMVMAACTEGFGPDADRLDPQKNKALKRAIIAARKALVPENYIQRAVQLAGQG 371

Query: 499 ------------WTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD-----RGEIKVFRKI 540
                       W   +   VS  +         A+ E  E  AD     R + K  R +
Sbjct: 372 YTDFDVRVFDTDWDSEAYLTVSGQNSNNSVRIPNAFLEAVETDADWTLIRRTDGKPARTL 431

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A ALW K+    +++  P + F    N        G +++SN C+E       ++TA C
Sbjct: 432 KARALWDKIAYAAWQSADPGVQFDTTINEWHTCPASGRINASNPCSEYMF---LDDTA-C 487

Query: 601 NLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL SINL+     +  FD        R    VL+  + +      +  + ++ +R +GLG
Sbjct: 488 NLASINLMEFRRTDGSFDIPAFEHACRLWTVVLEISVLMAQFPSREIARLSYEYRTLGLG 547

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF-------- 711
                  L    IPY S E   I       ++  A + S E+AQE G +  +        
Sbjct: 548 FANIGGLLMASGIPYDSTEGRAICGAITAIMTGIAYATSAEMAQELGPFPGYAQNREAML 607

Query: 712 -------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                        +    D  V P   + L A+   + A+   ++  WD+     +  G 
Sbjct: 608 RVIRNHRRAAHGARSGYEDLSVLP---VALRADDCPDAALMDAAKAAWDKALALGEAHGF 664

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816
           RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +   L +    
Sbjct: 665 RNAQATVLAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALSRLGYT 724

Query: 817 DEAMISDLKYHDGSIGNIERIPD-DLKKIHATAF 849
            E +    +Y  G  G ++  P  D  K+ A  F
Sbjct: 725 PEEITRIERYAVGH-GTLQGAPGIDHAKLRAKGF 757


>gi|84687160|ref|ZP_01015041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664748|gb|EAQ11231.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2654]
          Length = 1230

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 132/569 (23%), Positives = 215/569 (37%), Gaps = 103/569 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R     + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAANEPLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD-----------L 465
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++           L
Sbjct: 248 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEYINWKVKEEQKVASL 307

Query: 466 RKNTGDDRRRTHDMNTA--NW---------------------------IPDLFMKRV--- 493
              +    R  +D+ TA   W                           IP+ ++KRV   
Sbjct: 308 VAGSKMHERHLNDIFTAIHGWDGSIDAATDPKENPQLKDAVRAAKKVAIPETYIKRVLDY 367

Query: 494 -----------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD-----RGEIKV 536
                      T +  W   +   VS  +         A+ +  E  AD     R +  V
Sbjct: 368 ARQGYASIEFPTYDTDWDSEAYASVSGQNSNNSVRVTDAFLKAVEADADWELIRRTDGSV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW  +    +    P I + D  N        G +  SN C+E       ++
Sbjct: 428 AKTIKARDLWENIGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TA CNL S+NLL    +  F  +      R     L+  + +     ++  + ++  R +
Sbjct: 485 TA-CNLASMNLLTFLKDGTFQAEDYMHATRLWTVTLEISVTMAQFPSKEIAQLSYDFRTL 543

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG       L  + + Y S E   +       +S  A + S E+A E GA+  +K +  
Sbjct: 544 GLGYANIGGLLMNMGLGYDSKEGRALTGALTAILSGVAYATSAEMAGELGAFDGYKRNAD 603

Query: 715 ---------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                                  D     +D  G   +   +LAM+      WDE     
Sbjct: 604 HMLRVIRNHRTAAYGATDGYEALDIKPVALDHAGCPDKALVDLAMSS-----WDEALALG 658

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+
Sbjct: 659 EKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALE 718

Query: 812 QRDLWDEAMISDLKYH---DGSIGNIERI 837
           +   +  A I ++  +    GS+GN   I
Sbjct: 719 KLG-YSSAQIEEIIAYAVGHGSLGNAPGI 746


>gi|260433625|ref|ZP_05787596.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417453|gb|EEX10712.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1209

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/597 (23%), Positives = 230/597 (38%), Gaps = 117/597 (19%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 181 SAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEALSG- 239

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFL------------- 463
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+             
Sbjct: 240 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEKFIEWKVIEEQKVASI 299

Query: 464 ---------------------DLRKNTGDDRRRTHDMNTA------NWIPDLFMKRV--- 493
                                D  +    D ++   +  A        IP+ ++KRV   
Sbjct: 300 VAGSKMHEKMLNGIFEAIRTWDGAQEDAYDPKKNDALKAAIREAKKVAIPETYIKRVLDY 359

Query: 494 -----------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD-----RGEIKV 536
                      T +  W   + + VS  +         A+ +  E+ AD     R + KV
Sbjct: 360 AKQGHDSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLKAVEKDADWELINRTDGKV 419

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    +    P I F D  N        G +  SN C+E       ++
Sbjct: 420 AKVVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMF---LDD 476

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TA CNL S+NLL    + +F         R     L+  + +     ++  + ++  R +
Sbjct: 477 TA-CNLASMNLLTFLKDGEFQAADYMHAARLWTLTLEISVMMAQFPSKEIAQLSYDFRTL 535

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL- 715
           GLG       L  +   Y S E   I       ++  A + S E+A E G ++ +K +  
Sbjct: 536 GLGYANIGGLLMNMGYGYDSDEGRAICGALTAIMTGVAYATSAEIAGELGPFAGYKRNAD 595

Query: 716 -----------WDQGV-----------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                        QGV            P+D      +   +LAM+      WDE     
Sbjct: 596 HMLRVIRNHRRAAQGVTEGYEKLSVKPVPLDHANCPDKRLVDLAMS-----AWDEALSLG 650

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L+
Sbjct: 651 EKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALE 710

Query: 812 QRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           +   +  A I ++  +    G++GN   I           P++L KI A   +AF+I
Sbjct: 711 KLG-YSSAEIEEIVSYAVGHGTLGNAPGINHTSLTGHGFGPNELAKIDAALESAFDI 766


>gi|158313087|ref|YP_001505595.1| vitamin B12-dependent ribonucleotide reductase [Frankia sp.
           EAN1pec]
 gi|158108492|gb|ABW10689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EAN1pec]
          Length = 1011

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 135/600 (22%), Positives = 240/600 (40%), Gaps = 60/600 (10%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 134 FSFNSPVWFNVGTAAPQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 193

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H DV EF++ +  
Sbjct: 194 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVVEFVETKAR 252

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL  + +     QNA  ++   DE      + G  F++    
Sbjct: 253 EEDKIRALRD---AGFDMDLGGRDIASVQYQNANNSVRVNDEFMRAV-VDGTSFDLRA-- 306

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R + +V   + A  L+R +    +E   P I +    N        G + +SN 
Sbjct: 307 ------RLDNRVIESVDARGLFRTISQAAWECADPGIQYDGTINDWHTCPESGRISASNP 360

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NL+     +  FD +   +++   +  +D  I      
Sbjct: 361 CSEYVHLDNSS-----CNLASLNLMKFLRPDRTFDTETFVASVELIITAMDISICFADFP 415

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +  K    +R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 416 TPEITKVTRAYRQLGIGYANLGALLMASARAYDSDGGRALAAAITSLMTATAYRRSAELA 475

Query: 703 QERGAYSSF------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              GAY  F            K S  +  V  + +        +E  +   +   W+   
Sbjct: 476 GTVGAYDGFARNADAHRRVVRKHSAANDAVRTVHA--------EEARLITAASKEWERAL 527

Query: 751 KRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLV 807
              +  G RN+    +APT TI  A  C  +  I+P    + +K  + G    +VN  + 
Sbjct: 528 SVGEKHGWRNAQVSLLAPTGTIGLAMDCDTT-GIEPDLALVKMKKLVGGASMKIVNQTVP 586

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESA 860
             L+     +E + + ++Y     G++   P  L+  H   F+       I PM  +   
Sbjct: 587 AALRALGYAEETIEAIVEYI-AEHGHVVDAP-GLRTEHYEVFDCAIGDRAISPMGHVRMM 644

Query: 861 SRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  Q ++  A S  + +   +   +++ IY + W +GLK     R         + +KG 
Sbjct: 645 AAVQPFLSGAISKTVNMPATATVAEVEEIYLEGWRLGLKALAIYRDNCKVGQPLTDVKGA 704


>gi|294054517|ref|YP_003548175.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613850|gb|ADE54005.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
          Length = 971

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 135/603 (22%), Positives = 234/603 (38%), Gaps = 62/603 (10%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NS    PQ S+CF+  V D++  I    +  AML K+  G G D + +R     + G  G
Sbjct: 180 NSQYEFPQCSACFIQHVDDNMDSIMELARSEAMLFKFGSGSGTDLSSIRSTREKLSG-GG 238

Query: 420 KSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           +  G + FL V +  A  V  GGK R+ A    L+ WH D+EEF++ +     + R+   
Sbjct: 239 RPSGPLSFLSVYDAVAGVVKSGGKTRRAAKMNVLKDWHPDIEEFIEAKTI---EERKAWA 295

Query: 479 MNTANWIP----DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +    + P    D +     QN   ++ + D          K F     + E   ++   
Sbjct: 296 LIEEGYDPSFNGDAYGSIKYQNENLSVRASDTFMQAATTGSKFFTKRVTDGEPCEEKDAS 355

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            +  +IS               G P + F D  +     +  G  + +N C+E     ++
Sbjct: 356 YLLDRISEGT---------HVCGDPGMQFDDTIHKWHTCKGSGRQNCTNPCSEYLFLDNT 406

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNL S+NL+        D ++ A+  +  +   + V+D + +  E    ++H  R
Sbjct: 407 ----ACNLASLNLMKFRTAEGLDAERFAAAAKIFIIAQEIVVDRSSYPTEAITYNSHWFR 462

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG     + L      YAS E + +A      ++  A   S ELA  +  +  +K +
Sbjct: 463 TLGLGYANLGALLMSYGYAYASDEGLGLAKAITATMTGVAYKTSAELAALKTPFPGYKDA 522

Query: 715 LWDQGVFP--IDSIGLLAEV----------------RDEL--AMNRTSRLPWDELKKRVK 754
                  P   D++  +  V                R EL  A  + ++  W E     K
Sbjct: 523 RHHGVENPPEADNVASMQAVIELHKSHAESLASQTARGELAEATAQYAQRVWKEAADLGK 582

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    +APT TI  +    +  ++P+   +  K+   G    +    +    + 
Sbjct: 583 RYGYRNAQVTVLAPTGTIGFLMDCDTTGVEPAIGLVAYKTLAGGGLMTIPIKSIPLAMET 642

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-----------TAFE--IDPMWL---- 856
             +D+A I  +  H    G +E I    K+I +           +AF+  +   +L    
Sbjct: 643 MGYDQAAIDQVCAHVKEYGTVENISVSGKQIQSGLKDEHIPVFDSAFKSGMGQRYLPYTA 702

Query: 857 -IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            I+  S  Q ++  A S  + +  E + K++   Y  AW  G+K     R  S  S    
Sbjct: 703 HIDMMSAVQPFLSGAISKTVNMPQEATIKEIRETYIHAWKKGIKGIAIYRDGSKRSAPIK 762

Query: 915 TLK 917
           T K
Sbjct: 763 TTK 765


>gi|300784301|ref|YP_003764592.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299793815|gb|ADJ44190.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 937

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 241/602 (40%), Gaps = 68/602 (11%)

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT    Q+S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 139 FSFNSPVWFNVGTPSKQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 198

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 199 -SKELLTSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIQTKAR 257

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              + ++   +  A +  DL    ++    QNA  ++     V+D       EF  A EN
Sbjct: 258 ---EEKKIKVLRDAGFDMDLSGADISSVQYQNANNSV----RVTD-------EFMQAVEN 303

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 R  +  +V  +  A  L+R M    +E   P I +    N        G + +S
Sbjct: 304 GTEFGLRARLTGEVIDRTDAKKLFRTMAQAAWECADPGIQYDGTINDWHTCPESGRITAS 363

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NLL        FD    A  +   +  +D  I    
Sbjct: 364 NPCSEYMHLDNSS-----CNLASLNLLKFVTPEGTFDAPLFARAVEFVITAMDVSICFAD 418

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              E    +    R +G+G     + L  L   Y S     +A      ++  +   S E
Sbjct: 419 FPTEPIADTTRKFRQLGIGYANLGALLMALGHAYDSEGGRALAAAITSLMTGVSYRRSAE 478

Query: 701 LAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-----------LPWDE 748
           +A+  GAY  + + +   Q V           +R   A N   R           L  +E
Sbjct: 479 MARVVGAYEGYARNAEAHQRV-----------MRKHAAANELVRTYHSNDAAVRALATEE 527

Query: 749 LKKRVKTI---GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
            +K ++     G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 528 WQKGIEIGAKHGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVN 587

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   L+      E + + ++Y     G++   P  L+  H   F+       I PM  
Sbjct: 588 QTVPRALEALGYLTEQVEAIVEYV-AQNGHVVDAP-GLRPEHYEVFDCAVGERSIAPMGH 645

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   +  Q ++  A S  + + E +  ++++ IY Q W +GLK     R         ST
Sbjct: 646 VRMMAAVQPFLSGAISKTVNMPESATVEEVEEIYFQGWKLGLKALAIYRDNCKVGQPLST 705

Query: 916 LK 917
            K
Sbjct: 706 AK 707


>gi|146340435|ref|YP_001205483.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. ORS278]
 gi|146193241|emb|CAL77257.1| ribonucleotide reductase large subunit [Bradyrhizobium sp. ORS278]
          Length = 1256

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 128/589 (21%), Positives = 227/589 (38%), Gaps = 97/589 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 193 SSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 251

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 252 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVAAL 311

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     +PD ++KRV Q 
Sbjct: 312 VTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVPDNYIKRVIQF 371

Query: 497 A-------GWTLFSPDEVSD---------------LHDLYGKEFEIAYENYERQADRGEI 534
           A        + ++  D  S+               L D + +  E   ++      R   
Sbjct: 372 ARQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET--DSDWNLVGRTNK 429

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+ + + A  LW K+    + +  P + F    N     +  G + +SN C+E       
Sbjct: 430 KIVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF---L 486

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S NLL  +     QFD        R    VL+  + +     +   + ++ 
Sbjct: 487 DDTA-CNLASANLLTFYDTRTKQFDVASYEHLCRLWTIVLEISVLMAQFPSKAIAELSYE 545

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF- 711
            R +GLG       L  + + Y S E   +       ++  A   S E+A E GA+  + 
Sbjct: 546 FRTLGLGYANIGGLLMTMGLSYDSKEGRALCGALSAIMTGIAYRTSAEMAGELGAFPGYK 605

Query: 712 -----------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                            KG         +  + L      ++++   +   WD+     +
Sbjct: 606 KNAAHMLRVIKNHRRAAKGEATGYEALSVAPVPLDHAHCPQVSLVSHAIQAWDDALALGE 665

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ 812
           T G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +   L+ 
Sbjct: 666 TNGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRA 725

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
              + E+ I++++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 726 LG-YRESEIAEIEAYAVGHGSLSNAPGINASTLKAKGFTDEAIAKVEKA 773


>gi|241204320|ref|YP_002975416.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858210|gb|ACS55877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1271

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 134/578 (23%), Positives = 224/578 (38%), Gaps = 119/578 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 469 ---------------------TGDDRRRTHDMN------------TANWIPDLFMKRVTQ 495
                                 G D    +D N              + +P+ +++RV Q
Sbjct: 308 VTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 NAGWTLFSPDEVSDLH-DLYGKEFEI-AYENYERQADRGEIKV----FRKISAVALW--- 546
                 F+     DL    Y  +++  AY     Q     + +     R +     W   
Sbjct: 368 ------FARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWNLT 421

Query: 547 -----RKMLTM----LFET--------GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                R M T+    L+ET          P I F    N        G +  SN C+E  
Sbjct: 422 ARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYM 481

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-----AVRVLDNVIDINCHTIE 644
                ++TA CNL S+NLL      QF  DK    I       AVR+   V++++    +
Sbjct: 482 F---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQ 530

Query: 645 KAKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E
Sbjct: 531 FPSKRIAELSYEYRTLGLGYANIGGLLMSTGIPYDSTEARAIAGSLTAIMTGICYATSAE 590

Query: 701 LAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           +A E G + +F                   G         I+ + L+     +  +   +
Sbjct: 591 MAAELGPFPNFAPNRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHA 650

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FT 800
           +  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F 
Sbjct: 651 KSAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 710

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 711 IINRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 747


>gi|302525528|ref|ZP_07277870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
 gi|302434423|gb|EFL06239.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
          Length = 938

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 144/612 (23%), Positives = 243/612 (39%), Gaps = 68/612 (11%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT   Q +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 137 FSFNSPVWFNVGTSSKQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 196

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+EEF+  +  
Sbjct: 197 -SKELLTSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIQTKAR 255

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
              +  +   +  A +  DL    ++    QNA  ++     VSD       EF  A EN
Sbjct: 256 ---EEEKIKVLRDAGFDMDLSGSDISSVQYQNANNSV----RVSD-------EFMHAVEN 301

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 R  +  +V  +  A  L+R M    +E   P + +    N        G + +S
Sbjct: 302 GTDFGLRARLTGEVIDRTDAKKLFRSMAQAAWECADPGVQYDSTINDWHTCPESGRITAS 361

Query: 583 NLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E + L++SS     CNL S+NLL   +++  FD    A  +   +  +D  I    
Sbjct: 362 NPCSEYMHLDNSS-----CNLASLNLLKFVSDDGTFDAPLFAKAVEFVITAMDISICFAD 416

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              E    +    R +G+G     + L  L   Y S     +A      ++  +   S E
Sbjct: 417 FPTEPIADTTRKFRQLGIGYANLGALLMALGHAYDSEGGRALAAAITSLMTGVSYRRSAE 476

Query: 701 LAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-----------LPWDE 748
           LA   G Y  + + +   Q V           +R   A N   R           L  +E
Sbjct: 477 LAGVVGPYEGYARNAEAHQRV-----------MRKHAAANELVRTYHSNDAAVRALASEE 525

Query: 749 LKKRVKTI---GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803
            +K ++     G RN+    +APT TI  +    +  I+P +  +  K  +  G   +VN
Sbjct: 526 WQKGIELGTRNGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVN 585

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWL 856
             +   LK      E + + ++Y     G++   P  L+  H   F+       I PM  
Sbjct: 586 QTVPRALKVLGYQAEQVEAIVEYV-AQHGHVVDAP-GLRPEHYEVFDCAVGDRSIAPMGH 643

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   +  Q +I  A S  + + E +  + ++ IY Q W +GLK     R         ST
Sbjct: 644 VRMMAAVQPFISGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRDNCKVGQPLST 703

Query: 916 LKGVDGKLNAVP 927
            K  +    A P
Sbjct: 704 AKKKEAVAEAEP 715


>gi|209885884|ref|YP_002289741.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
 gi|209874080|gb|ACI93876.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
          Length = 1251

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 133/593 (22%), Positives = 234/593 (39%), Gaps = 105/593 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVREEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          +R   +     + D  +KRV Q 
Sbjct: 308 VTGSKINQKHLKAIMKACVNCEGSGDDCFDPEKNPALKREIKLARRALVTDNMIKRVIQF 367

Query: 497 A--GWT-----LFSPDEVSD---------------LHDLYGKEFEIAYE-NYERQADRGE 533
           A  G+T      F  D  S+               L D + +  E   E N   + D G+
Sbjct: 368 ARQGYTDIQFDTFDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGEWNLVGRTD-GK 426

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           ++  + + A  LW K+    + +  P + F    N     +  G + +SN C+E      
Sbjct: 427 VR--KTLRARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF--- 481

Query: 594 SEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            ++TA CNL S NLL  +     +FD D      R    VL+  + +     +   + ++
Sbjct: 482 LDDTA-CNLASANLLTFYDPHTRRFDTDAYEHLCRLWTIVLEISVMMAQFPSKAIAELSY 540

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R +GLG       L  + +PY S E   +       ++  A + S E+A E G +  +
Sbjct: 541 EFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIMTGTAYATSAEMAAELGTFPGY 600

Query: 712 KGSL------------WDQGVFPIDSIGLLAEVRDELAMNRTS----------RLPWDEL 749
           K +                GV    ++G  A   D + ++  S          +  WD  
Sbjct: 601 KKNAKHVLRVIRNHRRAAHGV----AVGYEALAVDPVPLDHASCPQADIVEHAKAVWDRA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            +  +T G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 657 LELGETNGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVP 716

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
           E  +   + E+ I++++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 717 EALRALGYRESEIAEIEAYAVGHGSLSNAPGINASTLKAKGFTDEALAKVEKA 769


>gi|206562176|ref|YP_002232939.1| ribonucleotide reductase-like protein [Burkholderia cenocepacia
           J2315]
 gi|198038216|emb|CAR54169.1| putative ribonucleotide reductase [Burkholderia cenocepacia J2315]
          Length = 608

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 149/609 (24%), Positives = 243/609 (39%), Gaps = 84/609 (13%)

Query: 319 AFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-- 372
           A F RVA  L+L E    +  VE   F NL      + +   L N+G      + +CF  
Sbjct: 35  ALFHRVAHTLSLAEPADLRAQVERAFFRNLQHGA--IGAGRILANAGADTGGTMVNCFVH 92

Query: 373 -LTTVPDDLYGIFGALQENAMLAKY-----SGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            L   P   +    A    A+   +      GG+G D++PV   GA+    + + +G   
Sbjct: 93  PLAIPPGARWPAVDAALARALSDAWRTLLMGGGIGYDFSPVPPAGAYERCVSSE-RGACV 151

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +   +    A+   G R+GA    L   H D+  F+  ++     R R    N +  + 
Sbjct: 152 AIDRFDAMCRALPFTGPRRGAQMGVLRCDHPDLAAFVASKRG----RSRWPTFNLSVGVT 207

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D FM+ V Q+  W L            + +    A     R   R    ++  I A  LW
Sbjct: 208 DAFMEAVRQDLPWALVH----------HARPRSGACAPIRRPDGR---YLYATIPARTLW 254

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +++    ++  P + F D     +P +    + ++N C E  L         C LG I+
Sbjct: 255 HEIVGAARDSAEPGLLFLDTIRDTNPLREHERIDATNPCGEQPLPPYGN----CVLGPID 310

Query: 607 LLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           L + F ++        +FD+  LA  +R  VR+LDNV+D+    +   +      R IG+
Sbjct: 311 L-SRFVHHPFGVGGKPRFDFPGLADAVRIQVRMLDNVLDLTEWPLAAHEHEARRTRRIGV 369

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G   AL +L + Y   EA   A   +  +  HA +AS  LA ERG + ++  + +  
Sbjct: 370 GITGLGDALTMLRLRYDGTEARAFARSIVLTMREHAFAASAALAAERGVFPAYDPAAYLT 429

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA-NIC- 776
           G  P     L  +V   +A +                 G+RNS+ ++ AP  +++   C 
Sbjct: 430 G--PAHRTLLPLKVHHAIARH-----------------GLRNSHLLSFAPAGSVSLAFCD 470

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             S  I+P+      +   + D   V  F V     R      +  DL  H  S+G    
Sbjct: 471 NCSNGIEPALGWTQRRLVRTAD-GRVRPFRVENHAYR------LFRDL--HGDSVG---- 517

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
           +PD       TA +I P   +   +  Q  +D   S  + L E  S  ++D ++ QAW  
Sbjct: 518 LPD----YFVTAADIAPADQVAMLAALQPCVDAGISKTVTLPEQCSLAEVDALFFQAWRD 573

Query: 896 GLKTTYYLR 904
           GLK     R
Sbjct: 574 GLKGVTVFR 582


>gi|302348230|ref|YP_003815868.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328642|gb|ADL18837.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
          Length = 977

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 288 ERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E D  F Y  +++L  RY    + G  IE P     RVA+G + +           Y  +
Sbjct: 62  EDDMKFTYNAIRVLMSRYMTKDLRGRYIETPSMVMRRVALGFSGRVDPDS-----LYRAM 116

Query: 347 SSFHFMCSTPTLFN--SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               FM ++PTLFN  +      LS+C++T V DD+ GI   L    M  KY GG G  +
Sbjct: 117 IEGRFMFNSPTLFNMYADGAKGALSACYVTPVYDDMRGIMDGLTVQVMTFKYGGGEGFSF 176

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           + +R  G  + GT+G + G + F+++ + +   V QGGKR+GA    L  WH D+
Sbjct: 177 SELRPRGDVVAGTSGVASGPLSFMRLYDVSTDVVKQGGKRRGANMGILHDWHPDL 231



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW +++   +E G P + F D  N   P   +G V ++N C E  L         CNLGS
Sbjct: 410 LWEEIVRGAWEGGDPGMIFLDNHNKWVPTPWLGAVAATNPCGEEPLYPYES----CNLGS 465

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           ++L  +  + +FD D  A  +  AV  LD VID N    ++    N   R +GLG+MG  
Sbjct: 466 LSLDKYIRDGKFDLDSFAKDVDLAVDGLDAVIDYNRQPDQRQDLVNKFTRKVGLGIMGLA 525

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +AL  L+IPY S EAV     +M  I   A   S EL    G   +F+
Sbjct: 526 NALAKLNIPYDSEEAVAFTMIAMAMIEAEAWKRSWELGSRLGHAPAFE 573



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 43/234 (18%)

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI---APTATIANICGVSQSIDPSYQNLYVK 792
           +A+   +RL W+ LK   +++G R     A+   APT TI+ I G +  I+P +  +Y++
Sbjct: 690 MAIYDPARL-WNALKDYGRSLGARAPRHTAVNTTAPTGTISIIAGTTSGIEPYFALVYLR 748

Query: 793 SNMSGD-FTVVNSF------LVNELKQRDLWDEAMISDLKYHDGS----IGNIERIPDD- 840
               G+ + VV  F       + E        E ++  +  H GS    + ++E+   D 
Sbjct: 749 RVTIGELWEVVREFRDRLYSAIAEAGAPAELGEKLLEAISRHKGSLRWALEDVEKAIRDA 808

Query: 841 -------------------------LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                    L K+ AT+ + D  + I   +  Q + DQA S  +
Sbjct: 809 QLQEVDGKIVKANWDAEKLISRIKELAKLFATSMDFDVWYHIAHQAAAQLYTDQAISKTV 868

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            L  + S   +   Y  AWL GLK     R  S   V+     G   +LN VPV
Sbjct: 869 NLPKDASVNAVATAYLTAWLTGLKGVTVYRDES-KGVQVIYFGGQQRELNRVPV 921


>gi|116251709|ref|YP_767547.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256357|emb|CAK07438.1| putative vitamin B12-dependent ribonucleotide reductase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1271

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 134/578 (23%), Positives = 224/578 (38%), Gaps = 119/578 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 469 ---------------------TGDDRRRTHDMN------------TANWIPDLFMKRVTQ 495
                                 G D    +D N              + +P+ +++RV Q
Sbjct: 308 VTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 NAGWTLFSPDEVSDLH-DLYGKEFEI-AYENYERQADRGEIKV----FRKISAVALW--- 546
                 F+     DL    Y  +++  AY     Q     + +     R +     W   
Sbjct: 368 ------FARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWNLT 421

Query: 547 -----RKMLTM----LFET--------GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                R M T+    L+ET          P I F    N        G +  SN C+E  
Sbjct: 422 ARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYM 481

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-----AVRVLDNVIDINCHTIE 644
                ++TA CNL S+NLL      QF  DK    I       AVR+   V++++    +
Sbjct: 482 F---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQ 530

Query: 645 KAKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E
Sbjct: 531 FPSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAE 590

Query: 701 LAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           +A E G + +F                   G         I+ + L+     +  +   +
Sbjct: 591 MAAELGPFPNFAPNRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHA 650

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FT 800
           +  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F 
Sbjct: 651 KSAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 710

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 711 IINRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 747


>gi|213583962|ref|ZP_03365788.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 208

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 8/196 (4%)

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH++
Sbjct: 6   GIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLE 65

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---G 515
           VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L+D +    
Sbjct: 66  VESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQ 125

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQ 574
            EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D CN  SP   
Sbjct: 126 DEFERLYVKYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDP 181

Query: 575 HVGVVHSSNLCTEITL 590
            V  V  SNLC EI L
Sbjct: 182 VVAPVRQSNLCLEIAL 197


>gi|327439699|dbj|BAK16064.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 661

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 19/241 (7%)

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNS 592
           ++ +R I A  LW  +         P I F D  N  +  +  G  V ++N C E  L  
Sbjct: 424 VRTYRTIKAKELWNLINVCATYAAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQPLAP 483

Query: 593 SSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            S    VCNL ++NL A FA  +    D+D L  T++  VR+ DNVID   + +E+ KK 
Sbjct: 484 YS----VCNLAAVNL-AKFAKKETKTVDFDALRKTVKVGVRMQDNVIDATPYFLEENKKQ 538

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S E   + DE  + I+  A   SVELA ERG++ 
Sbjct: 539 ALGERRVGLGVMGLADLLIYCEKEYGSEEGNALVDEIFKTIAVAAYEESVELATERGSFP 598

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +G    +           A +R+        +     +++ +   G+RNS+ + +APT
Sbjct: 599 FLEGQTEAE----------TARLREAFINTGFMKKMPQHIRENIVANGIRNSHLLTVAPT 648

Query: 770 A 770
            
Sbjct: 649 G 649



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 314 IEMPQAFFM-----RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTR- 364
           IE P   F      R A GLA  E  +EKR     +FY  L S +F+ +   ++ +G+  
Sbjct: 120 IEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFGKFYEELVSMNFIPAGRVIYGAGSET 179

Query: 365 HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                +C++   V D   GI    ++   +    GG+G + + +R       G NGKS G
Sbjct: 180 EVTFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSG 239

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +L         V QGG R+GA    L  WH D+ EF+
Sbjct: 240 SVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFI 279


>gi|310827646|ref|YP_003960003.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
 gi|308739380|gb|ADO37040.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
          Length = 979

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 214/507 (42%), Gaps = 69/507 (13%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I         L K   G+G +++ +RG+   +  + G+S G
Sbjct: 174 QSSACFILSIEDKLLGHHSISEHYVSETKLFKGGSGVGTNFSSLRGVNEKL-SSGGQSSG 232

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN-T 481
           ++ FL+  +  A A+  GG  R+ A    ++  H ++EEF+D +    D  R    M   
Sbjct: 233 MMSFLQGLDRNAGAIKSGGTTRRAAKMVIVDVDHPEIEEFVDWKVKEEDKVRALGKMGYD 292

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD-------RGEI 534
            +   + +     QN+  ++              KEF  A  N E + D       R + 
Sbjct: 293 ISMDGEAYRTVAGQNSNNSV-----------RLNKEFMDAVINLEHEPDHKMTLKGRVDF 341

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-------VVHSSNLC 585
            V R++S   LW+K+ T  +    P + F D  N     P    G        ++++N C
Sbjct: 342 AVNREVSVKELWQKINTASWACADPGLQFDDLFNAWHTCPGGEDGDTSKKENRINATNPC 401

Query: 586 TEIT-LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           +E   LN ++     CNL SIN+   F    N+ D ++ +        VL+  I      
Sbjct: 402 SEYAFLNDTA-----CNLASINIFRFFDPETNKIDIERFSHLAGLIQLVLEASIYWGQFP 456

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E   + ++  R  GLGL    S +  L  PY S EA  +       ++ H+   S  +A
Sbjct: 457 TEDVARKSYLFRTTGLGLANAASLILALGYPYDSDEARNLIAALCGIMTGHSYYVSAMMA 516

Query: 703 QERGAYSSFK-GSLWDQGVFPIDS--IGLLAEVRDELA----------------MNRTSR 743
            + G +  ++  S + + V    S   G LA+  +E+                 +N +SR
Sbjct: 517 GKVGPFVKYEINSPYMKRVIRNHSRVAGYLADDYEEMTYEPLKINHELLEEMGFLNISSR 576

Query: 744 L--PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGD 798
           +   W +     +  G RN+    IAPT TI  A  CG + S++P Y ++  K  +  G 
Sbjct: 577 IKDAWKDAIDYGEANGYRNAQVSVIAPTGTISFAMDCGAT-SVEPFYNHVVFKKLVGGGS 635

Query: 799 FTVVNSFLVNELKQRDL-WDEAMISDL 824
             +VN   V E+  R+L +    ISD+
Sbjct: 636 MEIVNP--VMEIALRNLGYKPKEISDI 660


>gi|218459308|ref|ZP_03499399.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 302

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 23/249 (9%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD+  +    N    LFSP +V  ++ +   E  +  +  E  AD    K  +KI A  
Sbjct: 12  VPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK--KKIKARE 69

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E        
Sbjct: 70  FFQVLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVSEASEYNDDLSYK 127

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+ A  A +  D+ K   TI T++R L  V D++   ++   +K N 
Sbjct: 128 HLGKDISCNLGSLNIAA--AMDSADFGK---TIETSIRALTAVSDMSHIASVPSIEKGND 182

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSS 710
              AIGLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  +  
Sbjct: 183 ESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTRFKG 242

Query: 711 FKGSLWDQG 719
           F+ S +  G
Sbjct: 243 FENSKYASG 251


>gi|299139759|ref|ZP_07032932.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
 gi|298598383|gb|EFI54548.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
          Length = 1087

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 144/602 (23%), Positives = 236/602 (39%), Gaps = 78/602 (12%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +RG    + G  G 
Sbjct: 183 TGYTRPQCSACFINSVNDSLDSILTLAKTEGMLFKWGSGAGSNLSAIRGSMETLSG-GGT 241

Query: 421 SQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           + G + F++  +  A  +  GGK R+ A    L   H DVE+F+  +     + R+   +
Sbjct: 242 ASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDVEDFIQCKVK---EERKAWSL 298

Query: 480 NTANW---IPD--LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG-- 532
             A +    PD   F     QNA  ++     V+D       EF  A EN      R   
Sbjct: 299 MQAGYDGSGPDSEAFTSIFFQNANNSV----RVTD-------EFMQAVENDGMFTTRTVK 347

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + +  ++I A  L  ++    ++ G P + +    N     ++   +++SN C+E     
Sbjct: 348 DKQPVKEIRARDLMHQIAEATWQCGDPGMQYDTTINRWHTSKNTARINASNPCSEYMFLD 407

Query: 593 SSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            S     CNL S NLL       QFD       +      ++ ++D   +  E+  K++H
Sbjct: 408 DS----ACNLASFNLLKFLTPGGQFDIPSYRHAVAVLTTAMEIIVDAAGYPTEQIAKNSH 463

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE---RGAY 708
            +R +GLG     + L    +PY S      A      +   A + S  +A +    GA 
Sbjct: 464 DYRPLGLGYANLGALLMDRGLPYDSDAGRAYAATLTAILCGDAYAQSARIAGDCPPLGAA 523

Query: 709 SSFKGSLWDQG----VFPIDSIGLL-------AEVRDELAMNRTSRLP------------ 745
           +        QG     F ++    L       AEV +     ++S+ P            
Sbjct: 524 TPLTQQTGVQGGACPGFYVNREPFLDVIRMHRAEVNNIDKSLKSSKEPFVAPQLEELKAA 583

Query: 746 ----WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDF 799
               WD      +  G RNS    +APT TI  +    +  I+P    + Y K    G  
Sbjct: 584 SQNAWDTALALGEKHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMI 643

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE--IDP---- 853
            +VN+ +   L +    +  +   + Y D + G IE  P  LK  H   F+    P    
Sbjct: 644 KIVNNTVPGALFKLGYKESEVEGIVNYIDAT-GTIEGAP-SLKPEHLAVFDCSFKPAKGT 701

Query: 854 ---MWL--IESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRS 905
               W   ++  S  Q ++  A S  + L  P+   +D I   Y +AW +GLK     R 
Sbjct: 702 RTIAWTGHVKMMSATQPFLSGAISKTVNL--PNDCSVDDIAEAYTEAWRLGLKAVAIYRD 759

Query: 906 RS 907
            S
Sbjct: 760 NS 761


>gi|220925864|ref|YP_002501166.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium nodulans ORS 2060]
 gi|219950471|gb|ACL60863.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium nodulans ORS 2060]
          Length = 1243

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 130/565 (23%), Positives = 223/565 (39%), Gaps = 94/565 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRGENEKLAG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H DVE F+D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEAFIDWKVKEEQKVAAL 307

Query: 469 -TGDDRRRTH---------------------DMNTA----------NWIPDLFMKRVTQN 496
            TG      H                     + N A            +PD ++KRV Q+
Sbjct: 308 VTGSKVAAKHLKAVMRACVNCEAEGDACFDPERNPALKREVKAARRAMVPDAYIKRVIQS 367

Query: 497 A-------GWTLFSPDEVSDLH-DLYGK----------EFEIAYE---NYERQADRGEIK 535
           A        + +F  D  S+ +  + G+          EF  A E   ++  +A  G  K
Sbjct: 368 ARQGATEVDFPVFDTDWDSEAYLTVSGQNSNNSVSLTDEFLRAVEADGDWPLKARIGG-K 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + F    N        G + +SN C+E       +
Sbjct: 427 VTKTLKARDLWDKIGAAAWASADPGLHFNTTMNDWHTCPAGGRIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +TA CNL S NLLA +      FD +      R    VL+  + +      +    ++ +
Sbjct: 484 DTA-CNLASANLLALYDRTTKTFDVEAYEHLCRLWTVVLEISVTMAQFPSREIADLSYKY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK- 712
           R +GLG       L  + +PY S E   +A      ++  A + S E+A+E G + +++ 
Sbjct: 543 RTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAEMARELGPFPAYEE 602

Query: 713 -----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
                            G            + L      +  +   +   WD      + 
Sbjct: 603 NADAMLRVIRNHRRAAHGEAEGYEFLSTRPVPLDHAACPQRNLVAHATQAWDRALALGEE 662

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L+  
Sbjct: 663 HGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRAL 722

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             + E+ I++++ +    G++ + P
Sbjct: 723 G-YRESEIAEIEAYAVGHGSLGQAP 746


>gi|167945438|ref|ZP_02532512.1| ribonucleotide-diphosphate reductase subunit alpha [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 93

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
           Y++  VK  LL   +  +DL  + + +K ERD  F YLGLQ LYDRYF+H   G+R E+P
Sbjct: 8   YVKRAVKLELLDSRLQQYDLQRITDAIKPERDLQFNYLGLQTLYDRYFIHTEEGTRFELP 67

Query: 318 QAFFMRVAMGLALKETEKEKRAVEF 342
           QAFFMRVAMGLA+ E ++E RA+E 
Sbjct: 68  QAFFMRVAMGLAINEIDREGRAIEL 92


>gi|62996796|gb|AAY24448.1| ribonucleoside-diphosphate reductase large chain [Popillia japonica
           iridescent virus]
          Length = 225

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 38/250 (15%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G +P L   +   +A  Q G R+G+   YL+  H ++  FL++RK+TGD   R  +++
Sbjct: 3   SCGPMPHLHTYDSCCLAYKQDGVRRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLNLH 62

Query: 481 TANWIPDLFM---KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
               I D FM   +R T+       + D+  +L D + KE                  V 
Sbjct: 63  HCINITDKFMELIERCTKEK-----NVDDTWNLIDPHSKE------------------VT 99

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSS 594
            KISA  LW+++L    +TG P+I F D CN  +   Q   G+ +  SNLC E+ L + S
Sbjct: 100 DKISAKELWQRILETRLKTGEPYICFIDTCNKGMYDFQVEKGLSIKQSNLCVEVVLPTDS 159

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT----IEKAKKSN 650
             TAVC L S+N L H+  +++  D L   I+  + +LDN + I        IE+A  S 
Sbjct: 160 TRTAVCCLSSLN-LEHY--DEWKDDPLF--IKDVMEMLDNALTIFIENAPKRIERAVNSA 214

Query: 651 HTHRAIGLGL 660
              R+IG+G+
Sbjct: 215 KKGRSIGIGV 224


>gi|325526630|gb|EGD04172.1| ribonucleotide reductase-like protein [Burkholderia sp. TJI49]
          Length = 598

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 159/652 (24%), Positives = 271/652 (41%), Gaps = 95/652 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTP 356
           +  +RY      SR ++    F RVA  L+L E  + +  VE   F NL      + +  
Sbjct: 10  VFAERYAQPGEASRADV----FHRVAHALSLAEPAERRAQVERAFFVNLQRGA--IGAGR 63

Query: 357 TLFNSGTRHPQ-LSSCFL--TTVPDD--LYGIFGALQENAMLAKYS----GGLGNDWTPV 407
            L N+G  + + + +CF+    +P D  +  +  AL+     A+ +    GG+G D++PV
Sbjct: 64  ILANAGADNGRTMINCFVHPLAIPADAPVQAVDTALEHALADARVTLLMGGGIGYDFSPV 123

Query: 408 RGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
               A+  H ++G+  G    +   +    A+   G R+GA    L   H D+  F+  +
Sbjct: 124 PPADAYERHQSSGR--GACAAIDRFDAMCQALPFTGPRRGAQMGVLRCDHPDLVAFVTAK 181

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +     R R    N +  + D FM+ V  +  W L           ++      A     
Sbjct: 182 RG----RLRWPTFNMSVGVTDAFMEAVRYDLPWAL-----------VHHAPPRCASGAPP 226

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R  D   +      SA  LW +++    ++  P + F D     +P +    + ++N C 
Sbjct: 227 RLPDGRYLHAM--ASARTLWHEIIKAARDSAEPGLLFLDTIRDANPLREHERIDATNPCG 284

Query: 587 EITLNSSSEETAVCNLGSINL----LAHFANNQ---FDYDKLASTIRTAVRVLDNVIDIN 639
           E  L         C LG I+L    L  F+ ++   FD+  LA  +R  VR+LDNV+D+ 
Sbjct: 285 EQPLPPYGS----CVLGPIDLSRFVLHPFSIDEMPRFDFAMLADAVRVQVRMLDNVLDLT 340

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +      R IG+G+ G   AL +L + Y S EA   A   +  +  HA +AS 
Sbjct: 341 AWPLAAHECEARRTRRIGVGVTGLADALTMLQLRYDSVEARTFARGIVLRMREHAFAASA 400

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA ERG + ++  + +  G  P     L  +V   +A +                 G+R
Sbjct: 401 ALAAERGVFPAYDPAAYLAG--PAYLTPLPLKVHHAIARH-----------------GLR 441

Query: 760 NSNCMAIAPTATIA-NIC-GVSQSIDPS--YQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           NS+ ++ APT +++   C   S  I+P+  +Q   +    +G    +  FL      R L
Sbjct: 442 NSHLLSFAPTGSVSLAFCDNCSNGIEPAVGWQQRRMVRTANGQ---IRPFLAENHAYR-L 497

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           + E    ++K           +PD       TA EI P   +   +  Q  +D   S  +
Sbjct: 498 FRELYGENVK-----------LPD----YFVTAAEIAPADHVAMLAALQPCVDAGISKTV 542

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV-EKSTLKGVDGKL 923
            +  + S  ++D ++ QAW  GLK  T +    R A+ V + + L   DG +
Sbjct: 543 TMPGQCSLAEVDALFFQAWRDGLKGITVFRPDPRLASVVADDAALARRDGPV 594


>gi|15807364|ref|NP_296095.1| ribonucleoside-diphosphate reductase-like protein [Deinococcus
            radiodurans R1]
 gi|6460188|gb|AAF11919.1|AE002068_2 ribonucleoside-diphosphate reductase-related protein [Deinococcus
            radiodurans R1]
          Length = 1418

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 59/342 (17%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            C EI L         C+LG+INL A+   + FD+    + +RT VR LD+V+D+N   +E
Sbjct: 891  CGEIPLTVGEP----CDLGAINLAAYVRGSDFDFAAFRADVRTCVRFLDDVLDVNVFALE 946

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++   R +GLG+MG   AL  + + Y +    +   + M  +   A++ S  L QE
Sbjct: 947  DNRVASQDLRRLGLGVMGLADALIKMGLRYDNESGRQAIYDIMSALREEAVAESERLGQE 1006

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            RG Y  ++                          NR  ++P D           RN   +
Sbjct: 1007 RGFYPVYE-------------------------RNR-EQVPHDP---------RRNVAVL 1031

Query: 765  AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL----------KQRD 814
             +APT T + + GVS  I+P + + ++   +  ++  + + L  EL          ++  
Sbjct: 1032 TVAPTGTTSMLMGVSSGIEPVF-SPFIWRKIGSEYRALLAPLFVELLESYPAPKGMEKDG 1090

Query: 815  LWDEAMISD-LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ---- 869
             WD   +++ +  + GS+  +  IPD L+++   A +I P+  +      Q+  D     
Sbjct: 1091 GWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDISPVDHVRMQGTVQRAFDDGGQL 1150

Query: 870  -AQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
             A SL+  ++ P+   +D +   Y +A+  G K     R  S
Sbjct: 1151 AANSLSKTINLPNSASVDDVKSAYEEAYRTGCKGITVYRDGS 1192



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 118/300 (39%), Gaps = 55/300 (18%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGAL 387
           + + EK+ V   N     +    +P L  S    G +  +     +T V DD+ GI  A 
Sbjct: 235 QPDGEKQPVSVRNWTRVVYGQAISPELVASARANGVQIVRTLPEGVTAVADDMGGIIDAA 294

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------------KVANDTA 435
           ++ A +AK +     D + +R  GA I G+ G S G + FL            + A D+ 
Sbjct: 295 RQVAEIAKLNIEPRIDLSAMRPEGAPIKGSGGTSSGPVSFLMEIFDNFIEWANRGAEDSG 354

Query: 436 V-------------AVNQGGKRKGAVCAYLETWHIDVEEFL---DLRKNTGDDRRRTHDM 479
                          V QGG R+GA  A +   H DV +FL   DL +   +    T   
Sbjct: 355 PINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHPDVLDFLTAKDLDREAAEGDIST--F 412

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN-----YERQADRGE- 533
           N +  +   F   +  +  WT+       D  D+ GK F +  E      +     R E 
Sbjct: 413 NISILVDTKFWDTLQADGVWTI-------DAQDVPGKYFPVPQEGEYAGTFPELPTRAED 465

Query: 534 ----IKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLC 585
               + V+   I A  LW ++    + TG P + F D  N  S  +++G    + S+N C
Sbjct: 466 GAKGVPVYGSGIPARWLWDQIAQHAWSTGEPGLIFNDRVNEYSALKNLGERYEIRSTNPC 525


>gi|110598403|ref|ZP_01386676.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340012|gb|EAT58514.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
          Length = 1115

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 132/559 (23%), Positives = 234/559 (41%), Gaps = 98/559 (17%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 147 PQAHACFIQSVSDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSGGEKLSGGGSSSG 206

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN------------- 468
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 207 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASLVAGSR 265

Query: 469 ---------------TGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    +N       +  +P  ++ RV      G+T    D
Sbjct: 266 ICSRFLQAIVEEALLNGSDRKENPALNRLIQNALSRAVPMSYIIRVLALVEQGFTSLDFD 325

Query: 506 EV-----SDLHDLYG-----------KEFEIAYENYE----RQADRGEIKVFRKISAVAL 545
           E      S+ +   G            EF  A EN +    RQ   G  K  R + A  L
Sbjct: 326 EYNSNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWQLRQRTTG--KNVRAVKARDL 383

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W K+L   ++   P + F    N        G +++SN C+E       ++TA CNL S+
Sbjct: 384 WEKILLSAWKCADPGLQFDTTINEWHTCPASGRINASNPCSEYMF---LDDTA-CNLASL 439

Query: 606 NLLAHFANNQFDYDKL-----ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL+ HF + +    K+     AS + T V  + +V+  +  + E A+ S + +R +GLG 
Sbjct: 440 NLI-HFIDEESGRVKIRELQHASALWTIVLEI-SVLMAHFPSKEIARLS-YEYRTLGLGF 496

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD--- 717
               + L +L IPY SP+A+ +A      ++  A + S E+A + GA++    +  +   
Sbjct: 497 ANLGTVLMVLGIPYDSPKALALAGAIASVMTGQAYATSAEMAHDLGAFAGHSANAKEMLR 556

Query: 718 -----------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                            +G+  +   G+ +E   +       ++ WDE  ++ K  G RN
Sbjct: 557 VIRNHRRAAHNLSEEEYEGL-SVSPRGIDSEYCPKELFEAAGKI-WDEALQKGKKYGFRN 614

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +    IAPT TI  +    +  I+P +  +  K    G +  + +  V++  +R  +  +
Sbjct: 615 AQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTPS 674

Query: 820 MISDLKYHDGSIGNIERIP 838
            I +++++    G +   P
Sbjct: 675 QIDEIEHYCKGHGTLAGSP 693


>gi|308172805|ref|YP_003919510.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605669|emb|CBI42040.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 384

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 168/399 (42%), Gaps = 77/399 (19%)

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----- 593
           KI A  L  K+  +  E+G+P+I F+   N      HV  V  SNLC+E+   S      
Sbjct: 20  KIDARKLLEKLAVLRSESGYPYIMFEGNVNAEHANGHVSKVKFSNLCSEVLQASQVSEYT 79

Query: 594 --SEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEK 645
              EE  +     CNLGS+N+     N  F+     + ++ +V  L  V +  N      
Sbjct: 80  DYGEEDEIGLDISCNLGSLNVANVMKNGDFE-----TIVKLSVDALTRVSETSNIKNAPA 134

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             ++N   R+IGLG M     L    I Y S EA + A+     +++ ++  S+ELA+E 
Sbjct: 135 VARANREMRSIGLGAMNLHGYLAQNGIAYESEEARDFANVFFALVNYWSLVRSMELAKET 194

Query: 706 GA-YSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           G+ +  F+GS +  G +    I          +A++ + + + +  R+ W  L+  V   
Sbjct: 195 GSTFEGFEGSTYADGSYFDKYIAEDFRPKTEKVAKLFEGVEIPK--RIDWVRLEVNVMLH 252

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVN 808
           G+ +S  +AIAPT +I+ +   + S+ P        +Y N      M G  +  N F   
Sbjct: 253 GLYHSYRLAIAPTGSISYVQSATASVMPIMERIEERTYGNSKTYYPMPG-LSPQNWFFYK 311

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E                                      A+++D   +++  +  Q+ +D
Sbjct: 312 E--------------------------------------AYDMDMFKVVDMIATIQQHVD 333

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 334 QGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTK 372


>gi|309789877|ref|ZP_07684455.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
 gi|308228084|gb|EFO81734.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
          Length = 306

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 135/304 (44%), Gaps = 25/304 (8%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA-------LKETEKEKRAVEFY 343
           A   +   +L  RY +    G   E P+  F RVA  +A          ++ + R   FY
Sbjct: 10  ALSEIARTVLKKRYLIKDEQGKVTETPETMFQRVAETIAGIDARYGATPSQVKARTETFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++++   F  ++PTL N+G     LS+CF+  V D L  I+  ++  A++ +  GG G  
Sbjct: 70  HMMTQGLFEPNSPTLMNAGRPLGMLSACFVLPVDDSLESIYETMKHAALVHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++V N +  A+ QGG R+GA    L   H D+  F+
Sbjct: 130 FSRLRPHNDIVRSTMGVASGPVSFMEVYNYSTEAIKQGGTRRGANMGILRCDHPDILHFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            +++    D  R  + N +  I D FM+ V  +  + L +P              ++A  
Sbjct: 190 SVKQ----DLSRVTNFNISVAITDAFMQAVANDEEYNLLNPRT---------GLVQLAVR 236

Query: 524 NYERQADRGEIKV----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              +    GE+ V      ++ A  ++  ++     TG P + F D  N  +P   +G  
Sbjct: 237 EPLKHPFTGEVLVEANQPMRLRARVVFDLIIQCAHATGEPGLFFVDRTNEGNPVPALGEY 296

Query: 580 HSSN 583
            ++N
Sbjct: 297 EATN 300


>gi|225873206|ref|YP_002754665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793913|gb|ACO34003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
          Length = 1083

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 143/621 (23%), Positives = 251/621 (40%), Gaps = 90/621 (14%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G R+PQ S+CF+  V D L  I    +   ML K+  G G + +P+RG    + G  G 
Sbjct: 181 TGYRNPQCSACFINAVDDSLDSILTLAKTEGMLFKWGSGTGTNLSPIRGSMEQLSG-GGT 239

Query: 421 SQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDR----RR 475
           + G + F++  +  A  +  GGK R+ A    L   H D+ +F++ +           R 
Sbjct: 240 ASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDIVDFIECKMKEEAKAWALMRE 299

Query: 476 THDMNTANWIPD--LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRG 532
            +D ++    PD   +     QNA  ++        ++D + +  E   E   R   D  
Sbjct: 300 GYDGSSG---PDSEAYSSIFFQNANNSV-------RVNDEFMRAVEKDGEFTTRTVKDGA 349

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +K ++   A  +  K+    ++ G P + +    N     ++ G +++SN C+E     
Sbjct: 350 AVKTYK---AREIMHKIAEATWQCGDPGMQYDSTINRWHTSKNSGRINASNPCSEYMFLD 406

Query: 593 SSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           +S     CNL S NLL        FD       I   +  ++ ++D + +  E   +++H
Sbjct: 407 NS----ACNLASFNLLKFMTPAGTFDIRAYRHAIDVLITAMEILVDNSGYPTENIARNSH 462

Query: 652 THRAIGLGLMGFQSALHLLHIPYASP-------------------EAVEIADESMEFISF 692
            +R +GLG     + L  L +PY S                    ++  IA++     S 
Sbjct: 463 DYRPLGLGYANLGALLMALGLPYDSDAGRDFAATLTAIMCGEAYLQSSRIAEKCPPLASA 522

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------- 745
             ++ASVE  +  GA   F     ++  F +D I +     +++  ++TS  P       
Sbjct: 523 TPLTASVE--RNGGACPGF---YVNREPF-LDVIRMHRAEVNKIGKSKTSSEPFKVPELD 576

Query: 746 ---------WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
                    WD+     +  G RNS    +APT TI  +    +  I+P    + Y K  
Sbjct: 577 ALITASKECWDQALAHGEKYGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLV 636

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---- 850
             G   +VN+ +   L +    +E + + + Y D + G IE  P  +K  H   F+    
Sbjct: 637 GGGMIKIVNNTVPAALFKLGYKNEDVDAIVSYIDAT-GTIEGAP-GIKPEHLAVFDCSFK 694

Query: 851 -------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTT 900
                  I  +  I+  +  Q ++  A S  + +  P    +D I   Y ++W  GLK  
Sbjct: 695 PAKGTRSIHYLGHIKMMAATQPFLSGAISKTVNM--PHDSNIDDIAEAYLESWRQGLKAV 752

Query: 901 YYLR--SRSATSVEKSTLKGV 919
              R  S+ A  +  S  KG 
Sbjct: 753 AIYRDGSKGAQPLNVSDGKGA 773


>gi|213609532|ref|ZP_03369358.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 208

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 22/202 (10%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 1   SSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 60

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAY-ENY-ERQADRGEIKVF 537
               IPD+  +   +NA   LFSP    D+   YGK F +IA  E Y E  AD    K +
Sbjct: 61  LGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY 117

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE- 595
             I+A   ++ +  + FE+G+ +I F+D  N  +P    G ++ SNLC+EI  +NS+S  
Sbjct: 118 --INARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRY 173

Query: 596 ----------ETAVCNLGSINL 607
                         CNLGS+N+
Sbjct: 174 DDNLDYTHIGHDISCNLGSLNI 195


>gi|161522899|ref|YP_001585828.1| hypothetical protein Bmul_5876 [Burkholderia multivorans ATCC
           17616]
 gi|189348270|ref|YP_001941466.1| ribonucleotide reductase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|160346452|gb|ABX19536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia multivorans ATCC 17616]
 gi|189338408|dbj|BAG47476.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 598

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 150/649 (23%), Positives = 259/649 (39%), Gaps = 88/649 (13%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFH 350
           + L   +  +RY      SR ++    F RVA  L+L E  + +   E   F NL     
Sbjct: 4   QPLCTTVFAERYAQPGETSRADV----FHRVAHALSLAEPAERRAQAERAFFLNLQRGA- 58

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFL--TTVPDDL------YGIFGALQENAMLAKYSGGLG 401
            + +   L N+G  + + + +CF+    +P D         +  AL +  +     GG+G
Sbjct: 59  -IGAGRILANAGADNGRTMVNCFVHPLAIPPDTPVQTVDTALAQALDDARVTLLMGGGIG 117

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++PV    A+        +G    +   +    A+   G R+GA    L   H D+  
Sbjct: 118 YDFSPVPPADAY-ERRQSSVRGACEAIDRFDGMCRALPFTGPRRGAQMGVLRCDHPDLVA 176

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++     R R    N +  + D FM+ V  +  W L           ++      A
Sbjct: 177 FVAAKRG----RSRWPTFNLSVGVTDAFMEAVRHDLPWAL-----------VHHAPPRRA 221

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                R+ D G   ++  + A  LW +++    ++  P + F D     +P +    + +
Sbjct: 222 SGAPPRRPD-GRY-LYATVPARTLWHEIVKAARDSAEPGLLFLDTIRDANPLREHERIDA 279

Query: 582 SNLCTEITLNSSSEETAVCNLGSINL----LAHFA---NNQFDYDKLASTIRTAVRVLDN 634
           +N C E  L         C LG I+L    L  F    N +FD+  LA  +R  VR+LDN
Sbjct: 280 TNPCGEQPLPPYGS----CVLGPIDLSRFVLHPFGVDENPRFDFATLADAVRIQVRMLDN 335

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+D+    +   +      R +G+G+ G   AL +L + Y S EA  +A   +  +  HA
Sbjct: 336 VLDLTAWPLAAHEHEARRTRRVGVGVTGLADALTMLRVRYDSAEARTLARTIVLTMREHA 395

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +AS  LA ERGA+ ++  + +  G  P     L  +V   +A +               
Sbjct: 396 FAASAALAAERGAFPAYDPAAYLTG--PAYRTLLPLKVHHTIARH--------------- 438

Query: 755 TIGMRNSNCMAIAPTATIA-NIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G+RNS+ ++ AP  +++   C   S  I+P+      +   + D   +  F       
Sbjct: 439 --GLRNSHLLSFAPAGSVSLAFCDNCSNGIEPAVGWTQRRMVRTADGQ-IRPFRAENHAY 495

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R            +H+    N+E     L     TA +I P   +   +  Q  +D   S
Sbjct: 496 R-----------LFHELHGENVE-----LPGYFVTAADIAPADHVAMLAALQPCVDAGIS 539

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKG 918
             + +  + S  ++D ++ QAW  GLK  T +    R A+ V   T + 
Sbjct: 540 KTVTMPGQCSLAEVDALFFQAWRDGLKGITVFRPDPRLASVVADDTARA 588


>gi|294828088|ref|NP_712541.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
 gi|302393704|sp|Q8F3P1|NRDJ_LEPIN RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|293385936|gb|AAN49559.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 1201

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 207/547 (37%), Gaps = 101/547 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEPLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+E F+D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKKVASL 307

Query: 467 -------------------KNTGDDR---------RRTHDMNTANWIPDLFMKRVT---- 494
                              +  G+DR         ++T        IPD ++KRV     
Sbjct: 308 VTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLAR 367

Query: 495 QNAGWTLF---SPDEVSDLHDLYG-----------KEFEIAYEN-------YERQADRGE 533
           Q     LF   + D  SD ++               EF  A E        +  + ++ +
Sbjct: 368 QGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAK 427

Query: 534 I-----KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           +     K  + + A  LW K+    + +  P   +    N        G +++SN C+E 
Sbjct: 428 VEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNPCSEY 487

Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S NL    +     FD +      +    +L+  + +     ++ 
Sbjct: 488 MF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFPSKEI 543

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A+E+G
Sbjct: 544 AELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMAKEQG 603

Query: 707 AY-------------------SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            +                   +++     D     I  IG+         M + ++   D
Sbjct: 604 PFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSY-MLKAAQEDAD 662

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
                 +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 663 LALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFTLVKFKKLAGGGYFKIINQS 722

Query: 806 LVNELKQ 812
           +   LK+
Sbjct: 723 VPYGLKK 729


>gi|302393703|sp|Q72S00|NRDJ_LEPIC RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
          Length = 1201

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 207/547 (37%), Gaps = 101/547 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEPLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+E F+D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKKVASL 307

Query: 467 -------------------KNTGDDR---------RRTHDMNTANWIPDLFMKRVT---- 494
                              +  G+DR         ++T        IPD ++KRV     
Sbjct: 308 VTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLAR 367

Query: 495 QNAGWTLF---SPDEVSDLHDLYG-----------KEFEIAYEN-------YERQADRGE 533
           Q     LF   + D  SD ++               EF  A E        +  + ++ +
Sbjct: 368 QGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAK 427

Query: 534 I-----KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           +     K  + + A  LW K+    + +  P   +    N        G +++SN C+E 
Sbjct: 428 VEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNPCSEY 487

Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S NL    +     FD +      +    +L+  + +     ++ 
Sbjct: 488 MF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFPSKEI 543

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A+E+G
Sbjct: 544 AELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMAKEQG 603

Query: 707 AY-------------------SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            +                   +++     D     I  IG+         M + ++   D
Sbjct: 604 PFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSY-MLKAAQEDAD 662

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
                 +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 663 LALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQS 722

Query: 806 LVNELKQ 812
           +   LK+
Sbjct: 723 VPYGLKK 729


>gi|45657460|ref|YP_001546.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600699|gb|AAS70183.1| ribonucleotide reductase protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1209

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 123/547 (22%), Positives = 207/547 (37%), Gaps = 101/547 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 197 SAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEPLSG- 255

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+E F+D +          
Sbjct: 256 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKKVASL 315

Query: 467 -------------------KNTGDDR---------RRTHDMNTANWIPDLFMKRVT---- 494
                              +  G+DR         ++T        IPD ++KRV     
Sbjct: 316 VTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLAR 375

Query: 495 QNAGWTLF---SPDEVSDLHDLYG-----------KEFEIAYEN-------YERQADRGE 533
           Q     LF   + D  SD ++               EF  A E        +  + ++ +
Sbjct: 376 QGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAK 435

Query: 534 I-----KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           +     K  + + A  LW K+    + +  P   +    N        G +++SN C+E 
Sbjct: 436 VEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNPCSEY 495

Query: 589 TLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S NL    +     FD +      +    +L+  + +     ++ 
Sbjct: 496 MF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFPSKEI 551

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A+E+G
Sbjct: 552 AELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMAKEQG 611

Query: 707 AY-------------------SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            +                   +++     D     I  IG+         M + ++   D
Sbjct: 612 PFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSY-MLKAAQEDAD 670

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
                 +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 671 LALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQS 730

Query: 806 LVNELKQ 812
           +   LK+
Sbjct: 731 VPYGLKK 737


>gi|289642421|ref|ZP_06474567.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
 gi|289507766|gb|EFD28719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
          Length = 976

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 130/594 (21%), Positives = 242/594 (40%), Gaps = 48/594 (8%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 143 FSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 202

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ +F++ +  
Sbjct: 203 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVDFVETKSR 261

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             +  R   D   A +  DL  + +     QNA  ++   DE             I   +
Sbjct: 262 EENKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVTDEF--------MRAVIDDAD 310

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           ++ +A R + +    + A  L+R +    ++   P I + D  N        G + +SN 
Sbjct: 311 FDLRA-RLDGRTIETVRARTLFRSIAQAAWDCADPGIQYDDTINDWHTCPESGRISASNP 369

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NL+     +  FD D   + +   +  +D  I      
Sbjct: 370 CSEYVHLDNSS-----CNLASLNLMKFLRKDLSFDADAFVAAVELIITAMDISICFADFP 424

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +  +     R +G+G     + L      Y S     +       ++  A   S E+A
Sbjct: 425 TPEITRVTRMFRQLGIGYANLGALLMATGHAYDSEGGRAMGAAITSLMTATAYRRSAEIA 484

Query: 703 QERGAYSSFKGS------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              GAY  F  +      +  +     D++  +  V D   +   +R  W+  +   +  
Sbjct: 485 AALGAYDGFARNTDAHRRVIRKHAAATDAVRTVG-VDDARVLAVAAR-EWERAQSVGEKH 542

Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQR 813
           G RN+    + PT TI  A  C  +  I+P    + +K  + G    +VN  +   L+  
Sbjct: 543 GWRNAQVSLLPPTGTIGLAMDCDTT-GIEPDLALVKMKKMVGGSSMRIVNQTVPAALRAL 601

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKW 866
              +E + + ++Y     G++   P  L++ H   F+       I PM  I   +  Q +
Sbjct: 602 GYAEETIEAIVEYI-AEHGHVIDAP-GLRREHYEVFDCAIGERAITPMGHIRMMAAVQPF 659

Query: 867 IDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  A S  + +   +  ++++ IY + W +GLK     R         S L+G 
Sbjct: 660 LSGAISKTVNMPTSATVEEVEQIYLEGWRLGLKALAIYRDNCKVGQPLSDLRGA 713


>gi|189346081|ref|YP_001942610.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           limicola DSM 245]
 gi|189340228|gb|ACD89631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium limicola DSM 245]
          Length = 1146

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 127/557 (22%), Positives = 228/557 (40%), Gaps = 94/557 (16%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 173 PQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLRSSGEKLSGGGSSSG 232

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN------------- 468
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE F++ +               
Sbjct: 233 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVERFIEWKAREEDKVAALVAGSR 291

Query: 469 ---------------TGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR    ++        A  +P  ++ RV    + G+T    +
Sbjct: 292 ICSRFLKAIVDEAIANGSDRSENLNLQLLIKNALARAVPMNYIVRVLALVDQGYTTLDFE 351

Query: 506 EV-----SDLHDLYGKE-----------FEIAYENYERQA--DRGEIKVFRKISAVALWR 547
           E      S+ +   G +           F  A EN +  A  +R   K  R + A  LW 
Sbjct: 352 EYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENDDMWALRERTTDKTARAVRARDLWE 411

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+L   ++   P + F    N        G +++SN C+E       ++TA CNL S+NL
Sbjct: 412 KVLMSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSEYMF---LDDTA-CNLASLNL 467

Query: 608 LAHFANNQFDYDKL-----ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           + HF +      ++     AS + T V  L+  + +     +   + ++ +R +GLG   
Sbjct: 468 I-HFVDESTGKIRVRELLHASALWTVV--LEISVLMAHFPSKDIARLSYEYRTLGLGFAN 524

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD----- 717
             + L +L IPY SP+A+ +A      ++  A   S E+A++ GA++ +  +  D     
Sbjct: 525 LGTVLMVLGIPYDSPKALALAGAISALMTGQAYVTSAEMAKDLGAFAGYAANSKDMLRVI 584

Query: 718 ---------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                          +G+  +   G+ +E           ++ WDE  ++ K  G RN+ 
Sbjct: 585 RNHRRAAHNLSEEEYEGL-SVKPRGIDSEYCPTELFEAAGKI-WDEALQKGKKHGFRNAQ 642

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT TI  +    +  ++P +  +  K    G +  + +  V++  +R  +  A I
Sbjct: 643 VSVIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTSAQI 702

Query: 822 SDLKYHDGSIGNIERIP 838
            D++ +    G +   P
Sbjct: 703 DDIEKYCKGHGTLSGCP 719


>gi|94968153|ref|YP_590201.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550203|gb|ABF40127.1| Ribonucleoside-diphosphate reductase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1004

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 135/591 (22%), Positives = 227/591 (38%), Gaps = 69/591 (11%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           G   PQ S+CF+ +V D L  I    +   ML K+  G G + +P+R     + G  G +
Sbjct: 185 GYTRPQCSACFINSVHDSLDSILTLAKTEGMLFKWGSGTGTNLSPLRSSNEQLSG-GGTA 243

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G + F++  +  A  +  GGK R+ A    L   H D+ EF+D +              
Sbjct: 244 SGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNIEHPDIVEFIDCKAKEEAKAWALMQQG 303

Query: 481 TANWIPD--LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
                PD   +     QNA  ++   D+      +Y    +  +    +    G+  V +
Sbjct: 304 YDGSSPDAEAYSSIFFQNANNSVRVTDDF-----MYAVVRDADFST--KAVKSGD--VVK 354

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  L  K+    ++ G P + +    N     ++   +++SN C+E      S    
Sbjct: 355 TFKARWLLSKISEATWQCGDPGMQYDTTVNRWHTSKNTARINASNPCSEYMFLDDS---- 410

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+NL+    N  FD           +   + ++D   +  E   K++H +R +GL
Sbjct: 411 ACNLASLNLMKFAPNGTFDVAAYRHACAITITAQEILVDNAGYPTESIMKNSHDYRPLGL 470

Query: 659 GLMGFQSALHLLHIPYASP-------------------EAVEIADESMEFISFHAISASV 699
           G     + L    +PY S                    ++ +IA+          I+ SV
Sbjct: 471 GYANLGALLMAAGLPYDSDAGRDYAACVTAIMCGEAYLQSSKIAELGQPLTPATPITQSV 530

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGL-LAEVRDELAMN------RTSRLPWDELKKR 752
           E+       S+  G   ++  F +D I +  A V +    N        ++  WDE  + 
Sbjct: 531 EITG-----SACPGWYVNREPF-LDVIRMHRASVNNINQKNVPAPVFEAAKATWDEALQH 584

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNEL 810
            +  G RNS    +APT TI  +    +  I+P    + Y K    G   +VN+ +   L
Sbjct: 585 GERHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKIVNNTVPAAL 644

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMWLIES 859
            +     +   + + Y D + G IE  P  +K  H   F+           I  M  ++ 
Sbjct: 645 FKLGYTSDQANATVSYIDAT-GTIEGAP-HIKDEHLAVFDCSFKPAKGTRTISYMGHVKM 702

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRS 907
            +  Q +I  A S  + L  P    +D I   Y Q+W +GLK     R  S
Sbjct: 703 MAATQPFISGAISKTVNL--PKDATIDDIMEAYIQSWKLGLKAVAIYRDGS 751


>gi|14602364|ref|NP_148911.1| ORF127 RR1 [Cydia pomonella granulovirus]
 gi|14591882|gb|AAK70787.1|U53466_127 ORF127 RR1 [Cydia pomonella granulovirus]
          Length = 624

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 203/497 (40%), Gaps = 88/497 (17%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+  V  Y+   +    E L LR+ TG+ +  T ++     +PDLF+++  +   W  F 
Sbjct: 152 RQSRVAVYVSLHNTTAYESLFLRQ-TGNIQ--TENIFYGIMVPDLFVRKQKEGGVWHFFD 208

Query: 504 PDEVSD---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            D   D   L+D YG+E+E  YE   R+  +      + ++   LW +++  L   G+P+
Sbjct: 209 NDAQVDGKSLNDCYGEEYERLYEEMVRRGIQ-----IKSVNVWELWGEIVNCLATNGYPY 263

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----ETAVCNLGSINLLAHFANNQF 616
           I ++D  N  + QQ +GVV + NLC E+  +++       T++C L ++N+ A   +   
Sbjct: 264 IVWRDTVNKYNNQQALGVVKTLNLCAEVCQHATDSTVDTNTSLCTLMTLNVAAFCEDYTQ 323

Query: 617 DYDKLASTIRTAV------------RVLDNVID--------INCHTIEKAKKSNHTHRAI 656
            +  +   +R               ++LD+           +NC   E  +      R I
Sbjct: 324 HWHLIYDDLRQCQIPEQCIPPLGENKILDHCFYGGYMSTFVLNCVLGESKR------REI 377

Query: 657 GLGLMGFQSALHLLHIPYASPEAV--EIADESMEFISFHAISASVELAQERGAYS-SFKG 713
           G+   G   ALH+++   A+ E    + +    E+I    +  SV   +  G    +F+ 
Sbjct: 378 GVSPTGLFDALHIMYGAAATYEYAMDDYSARVAEYIYLGCVVGSVVYNRLYGVECVNFRA 437

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S + +GVF  D  G+   +           L W  ++      GM NS     APTAT +
Sbjct: 438 SRFSEGVFQFDLRGVTPSL----------TLQWACIRPHAMR-GMANSMLTTQAPTATTS 486

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I  V++S         V+  + G  T  NS            +    +DL ++      
Sbjct: 487 QITNVTES---------VQYPLPGRITTKNS------------ETGRFADLPFY------ 519

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
                +     H     + P+  I+  +    ++DQ+QS  +Y  EP   ++  +     
Sbjct: 520 -AHFTNQPPSRHP---HVSPLRQIKVYANTAPYVDQSQSTIIYC-EPKNDEISKVLVYTH 574

Query: 894 LMGLKT-TYYLRSRSAT 909
              LKT  YYL   S T
Sbjct: 575 KAQLKTGVYYLTYISPT 591


>gi|121606643|ref|YP_983972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
 gi|120595612|gb|ABM39051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
          Length = 1184

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 54/313 (17%)

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           C+LG I +L  F  +        +FD++   +++ T VR LDNV+++    + + +  + 
Sbjct: 683 CDLGPI-ILTRFVRHPFGFGGEPEFDFEAFEASVATQVRALDNVLEVTFWPLPQQQTESS 741

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IG+G  G  +AL +L + Y +PE  ++A      +   A +AS ELA+E+GA+  F
Sbjct: 742 AKRRIGVGFTGLGNALAMLRLRYDAPEGRDMAARIAVRMRDAAYAASSELAKEKGAFPKF 801

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                       D+ G LA           SRLP   L++ ++  G+RNS+ ++IAPT T
Sbjct: 802 ------------DANGYLA------TGTFASRLP-AALQQAIRAHGIRNSHLLSIAPTGT 842

Query: 772 I--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +  A     S  I+P++  +Y +     D +    + V +   R L+ E           
Sbjct: 843 VSLAFADNASNGIEPAFSWMYKRKKRESDGSTTE-YAVEDHAWR-LYRELG--------- 891

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDF 887
             G++ ++P        +A ++     I      Q +ID A  +++N+  D P G   DF
Sbjct: 892 --GDVNKLPG----YFVSALDMSATSHIAMMQAVQPFIDTAISKTVNVPADYPYG---DF 942

Query: 888 --IYRQAWLMGLK 898
             +Y QAW  GLK
Sbjct: 943 KSLYHQAWRAGLK 955



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 35/280 (12%)

Query: 321 FMRVAMGLALKE--TEKEKRAVEFY-NL----LSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           + RVA  LA  E   E+EK    F  NL    + +   M +  T   +      L +CF+
Sbjct: 39  YRRVARALASVELPAEREKHEALFLENLHAGAIGAGRIMSAAGTAIQA-----TLINCFV 93

Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D + G        I+ AL+E A   +  GG+G D++ +R  GA +  T   + G  
Sbjct: 94  QPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVKATASMASGPC 153

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ N +  +
Sbjct: 154 SYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVHEFITAKRTPG----RWNNFNVSVGM 209

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ +  +  W L        +H        +A   ++R AD   + V++ ++A  +
Sbjct: 210 SDGFMQALNDDQPWEL--------VHKAKPGAALMAKGAFQR-AD--GLWVYQTVAAREM 258

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           W  ++   ++   P I F D  N  +  ++   + ++N C
Sbjct: 259 WDTVMRSAYDFAEPGILFLDNINTDNNLRYCEAIAATNPC 298


>gi|284046866|ref|YP_003397206.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
 gi|283951087|gb|ADB53831.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
          Length = 963

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 132/598 (22%), Positives = 233/598 (38%), Gaps = 80/598 (13%)

Query: 354 STPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN G    PQ S+CF+ +V D +  I G   +   + +   G G + + +RG   
Sbjct: 138 NSPVWFNVGFEEQPQCSACFILSVEDTMESILGWNTKEGNIFRGGSGSGINLSNIRGSME 197

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFL-------- 463
            +    G + G + F++ A+  A  +  GGK R+ A    L+  H DV+EF+        
Sbjct: 198 PLR-KGGTASGPVSFMRGADSWAGTIKSGGKTRRAAKMVVLDVDHPDVQEFIWCKAKEED 256

Query: 464 --DLRKNTGDDRR---------RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             +  +N G D           +  + N +  + D FM+ V +   W L +  + S +  
Sbjct: 257 KAEALRNAGFDMSIDGDGFTSIQYQNANNSVRVSDAFMQAVEKGEDWDLIARTDGSAVKT 316

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +  +E                  + R+I A A WR           P + +    N    
Sbjct: 317 VDARE------------------LMREI-AEAAWR--------CADPGVQYDTTINQWHT 349

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRV 631
             + G +++SN C+E      S     CNL S+NL+     +  FD       +      
Sbjct: 350 SPNSGRINASNPCSEYMHVDDS----ACNLASLNLMKFRRPDGTFDVANFEHAVDVVFLA 405

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            + V+  + +  E   K+ +  R +GLG     + L    +PY S      A      ++
Sbjct: 406 QEIVVGASSYPTEGIAKNANAFRQLGLGYANLGAYLMSNGMPYDSDAGRGTAAAITALMT 465

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI---------GLLAEVRDELAMNRTS 742
             A   S E+A   GA  +F+   + +   P +++          +     D+  +   S
Sbjct: 466 GRAYQRSAEIA---GAVGTFE--RYAENREPHNAVMRMHRDASYAIPNASCDDDGLLTAS 520

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFT 800
           R  WD+  +  +  G RN+    +APT TI+ +    +  ++P +  +  K  +  G  T
Sbjct: 521 RRVWDDAVELGEKNGYRNAQATVLAPTGTISFLMDCDTTGVEPDFSLVKFKELVGGGQMT 580

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDP 853
           +VN  +   L+     DE  +  ++ H      I   P  L   H   F+       I  
Sbjct: 581 IVNRTVPLALQTLGYSDE-QVEQIESHINDASTIVGAP-GLAAEHLPVFDVAVGERAISH 638

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           M  I+     Q +I  A S  + L + +  + +   Y QAW +G+K     R  S T+
Sbjct: 639 MGHIKMMGAVQPFISGAISKTVNLPQTATVEDIADAYLQAWRLGVKALAIYRDGSKTA 696


>gi|319442525|ref|ZP_07991681.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 323

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 49/331 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+ A       D    + TI TA+R L  V D     ++   ++ N+   AIGL
Sbjct: 24  CNLGSLNIAA-----AVDSPDFSRTIETAIRGLTAVSDQTFIDSVPSIREGNNASHAIGL 78

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L   HI Y S E ++  +     + +  + AS  +A+ERG  + SF+ S + 
Sbjct: 79  GQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYECLKASNAIARERGRKFGSFETSDYA 138

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAP 768
            G F     P         VR E+  N +  +P    W  LK  V   G+ N N  A+ P
Sbjct: 139 SGEFFDRYDPASFAPATDRVR-EIFANSSIHVPDAADWAALKDAVMADGLYNRNLQAVPP 197

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++                         E  I  + Y  
Sbjct: 198 TGSISYINNSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA 233

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             + N     D+L+     A+EI    +I++ +   K++DQ  SL L+  D+ + + ++ 
Sbjct: 234 PHMDN-----DNLEYFQ-DAYEIGYEKIIDTYAVATKYVDQGLSLTLFFRDDATTRDINR 287

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               AW  G+KT YY+R R  T++  + ++G
Sbjct: 288 AQIYAWRKGIKTLYYIRLRQ-TALTGTEVEG 317


>gi|170738645|ref|YP_001767300.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium sp. 4-46]
 gi|168192919|gb|ACA14866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium sp. 4-46]
          Length = 1247

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 133/594 (22%), Positives = 230/594 (38%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRGENEKLAG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN-------- 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E F+D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWKVREEQKVAAL 307

Query: 469 -TGDDRRRTH---------------------DMNTA----------NWIPDLFMKRVTQN 496
            TG      H                     + N A            +PD  +KRV Q+
Sbjct: 308 VTGSKVAAKHLKAVMRACLNCEAEGDACFDPERNPALKREVKAARRAMVPDASVKRVIQS 367

Query: 497 A-------GWTLFSPDEVSD---------------LHDLYGKEFEIAYENYERQADRGEI 534
           A        + +F  D  S+               L D + +  E   +   R    G++
Sbjct: 368 ARQGATEVDFPIFDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVEADADWPLRTRIGGKV 427

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              + + A  LW K+    + +  P + F    N        G + +SN C+E       
Sbjct: 428 A--KTLKARDLWEKIGAAAWASADPGLHFNTTMNDWHTCPVGGRIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S NLLA F      FD +      R    VL+  + +      +    ++ 
Sbjct: 483 DDTA-CNLASANLLALFDRGTRTFDVEAYEHLCRLWTIVLEISVTMAQFPSREIADLSYK 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L  + +PY S E   +A      ++  A + S E+A+E G + +++
Sbjct: 542 YRTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAEMARELGPFPAYE 601

Query: 713 GS-----------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            +                              P+D     A  + +L  + T    WD  
Sbjct: 602 ENADAMLRVIRNHRRAAHGEAEGYEFLSTKPVPLDHA---ACPQPDLVAHATR--AWDRA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLV 807
               +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + 
Sbjct: 657 LVLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
           + L+    + E+ I++++ +    G++ + P  +   + A  F  D +  +E+ 
Sbjct: 717 DALRALG-YRESEIAEIEAYAVGHGSLGQAPAVNPAALRAKGFTDDKIAAVEAG 769


>gi|118431711|ref|NP_148354.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
 gi|116063033|dbj|BAA81072.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
          Length = 979

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR+++   +  G P + + D  N  SP   +G V+++N C+E TL         CN
Sbjct: 424 AREIWREIVEAAWGGGDPGLVYFDNHNKWSPTPWLGAVNATNPCSEQTLYPFEP----CN 479

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+++  + A  +FD ++ A+ +      +D VID+N H  E+   +N   R IGLG+M
Sbjct: 480 LGSLSVDKYVAGGRFDLERFANDVEFLTEAMDAVIDLNRHPDERQDTANKFTRKIGLGIM 539

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           G   AL  L  PY S EAV      M  +   +   S E+    G   +F+  ++D
Sbjct: 540 GLADALAGLGYPYDSEEAVAFTTILMAGLEVFSWKRSWEMGARLGHAPAFECRMFD 595



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F Y  +++L  RY +     R +E P     RVA+G   +E     R    Y LL  
Sbjct: 67  DFGFTYNAVRVLMARYMVKDEMGRFLETPSMVMRRVALGF--RERVDPDR---LYRLLVE 121

Query: 349 FHFMCSTPTLFN---SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
             FM ++PTLFN    G R   LS+C++T V DD+  I  A    A   K+ GG G  ++
Sbjct: 122 RRFMFNSPTLFNMFVDGARG-TLSACYVTPVYDDMDSIMDAATVQAKTFKWGGGQGFSFS 180

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
            +R     + GT+G S G + F+++ +     V QGGKR+GA    +  WH D+
Sbjct: 181 ELRPRWDVVRGTSGYSSGPMSFMRLYDTVTELVKQGGKRRGANMGIMHVWHPDI 234



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 30/187 (16%)

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFL 806
           E  +R+     RN+    IAPT TI+ + G S  I+P +  +Y +    G F  VV+ F 
Sbjct: 720 EYGRRLGAKAPRNTVTTTIAPTGTISILAGTSSGIEPYFALVYKRQVAVGTFLEVVSRFR 779

Query: 807 VNELKQ-------RDLWDEAMISDLKYHDGSI-----------------GNIERIPDDLK 842
            + LK        RD+  E +  +++ H GS+                 G +E +   L 
Sbjct: 780 EDLLKAAEKHGVGRDVL-EIVYEEVRRHKGSLRWSLNVLAEKLDGRVDDGFLEELA-RLA 837

Query: 843 KIHATAFEIDPMWL-IESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
           + +AT+ +  P+W  +      Q ++DQA S  + L    +   ++  Y  AWL GLK  
Sbjct: 838 RKYATSMDF-PLWYHLAHQIAAQLYVDQAISKTVNLPRTATPDDVEASYLAAWLGGLKGF 896

Query: 901 YYLRSRS 907
              R  S
Sbjct: 897 TVYRDES 903


>gi|148255613|ref|YP_001240198.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. BTAi1]
 gi|146407786|gb|ABQ36292.1| ribonucleoside-diphosphate reductase class II [Bradyrhizobium sp.
           BTAi1]
          Length = 1258

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 125/587 (21%), Positives = 228/587 (38%), Gaps = 93/587 (15%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 193 SSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 251

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 252 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVAAL 311

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     +PD ++KRV Q 
Sbjct: 312 VTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVPDNYIKRVIQF 371

Query: 497 A-------GWTLFSPDEVSDLH-DLYGKEFEIAY---ENYERQAD---------RGEIKV 536
           A        + ++  D  S+ +  + G+    +    +++ R  +         R   KV
Sbjct: 372 AKQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWSLIGRTNKKV 431

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N     +  G + +SN C+E       ++
Sbjct: 432 VKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF---LDD 488

Query: 597 TAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           TA CNL S NLL  +      FD        R    VL+  + +     +   + ++  R
Sbjct: 489 TA-CNLASANLLTFYNTETKHFDVGAYEHLCRLWTVVLEISVLMAQFPSKAIAELSYEFR 547

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711
            +GLG       L  + + Y S E   +       ++  A   S E+A E G +  +   
Sbjct: 548 TLGLGYANIGGLLMTMGLSYDSKEGRALCGALSAIMTGIAYKTSAEMAGELGPFPGYKKN 607

Query: 712 ---------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                          KG         ++ + L      ++++   +   WD+     +  
Sbjct: 608 AAHMLRVIRNHRRAAKGEATGYEALSVNPVPLDHAHCPQVSLVSHAIQAWDDALALGEVN 667

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +   L+   
Sbjct: 668 GYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRVLG 727

Query: 815 LWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            + E+ I++++ +    G++   P  +   + A  F  + +  +E A
Sbjct: 728 -YRESEIAEIEAYAVGHGSLSNAPGVNATTLKAKGFTDEAIAKVEKA 773


>gi|168055674|ref|XP_001779849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668761|gb|EDQ55362.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 160

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 82/125 (65%), Gaps = 7/125 (5%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLK I+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLK-IYRTVWEIKQRSIVD 59

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVE 912
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+     +V+
Sbjct: 60  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTVD 119

Query: 913 KSTLK 917
           +S++K
Sbjct: 120 QSSIK 124


>gi|189499762|ref|YP_001959232.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides BS1]
 gi|189495203|gb|ACE03751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium phaeobacteroides BS1]
          Length = 1161

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 204/526 (38%), Gaps = 101/526 (19%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVTDDLVNDGGIFDLALREARVFKFGSGSGTNFSNLRSAGEKLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR--------------- 466
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 238 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKSKEEDKVASLVSGSR 296

Query: 467 -------------KNTGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR++   ++T         +P  ++ RV    + G+T    D
Sbjct: 297 VCSTFLKAIVDEASKNGCDRQKNEALHTLMKNAVGRGVPMNYIVRVLSLVDQGFTSLDFD 356

Query: 506 EVSDLHDLYGKEFEI-AYENYERQADRGEIKV------------------------FRKI 540
           E       Y  ++E  AY+    Q     ++V                         R +
Sbjct: 357 E-------YNAQYESEAYQTVSGQNSNNTVRVTNAFMKAVENDELWELKERTTGMHVRSV 409

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW K++   ++   P + F    N        G +++SN C+E      S     C
Sbjct: 410 RARDLWDKIVMSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMFLDDS----AC 465

Query: 601 NLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL S+N L  F + +      D L    R    VL+  + +     +   + ++  R +G
Sbjct: 466 NLASLN-LGRFLDEKSGTIKIDDLLHASRLWTVVLEISVLMAHFPSKDIARLSYEFRTLG 524

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG     + L ++ IPY SP+A+ IA      I+  A  AS ELA++ G ++ ++ +  D
Sbjct: 525 LGFANIGTVLMIMGIPYDSPKALAIAGAISALITGEAYKASAELARDLGPFARYEENAGD 584

Query: 718 ------------QGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMR 759
                         +   +  GL  + R          +  T+   WDE     +  G R
Sbjct: 585 MMRVIKNHRRAAHNMSEDEYEGLSVKPRGIDSEYCPSELFATAGKVWDEALDMGEKHGYR 644

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           N+    IAPT TI  +    +  ++P +  +  K    G  F +VN
Sbjct: 645 NAQVSVIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVN 690


>gi|163746552|ref|ZP_02153910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
 gi|161380437|gb|EDQ04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
          Length = 1217

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 127/570 (22%), Positives = 211/570 (37%), Gaps = 97/570 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +RG G  
Sbjct: 177 TRSKSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEK 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA-------------------------- 447
           + G  GKS G++ FLK+ +  A A+  GG  + A                          
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIQDFINWKVLEEQK 295

Query: 448 -----------------VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                            +   ++ W    E+  D  KN  D  ++         IP+ ++
Sbjct: 296 VASIVAGSKMHEQKLNLLFDAIKAWDGKAEDAYDPAKN--DQLKQAIREAKKVTIPETYV 353

Query: 491 KRV--------------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD----- 530
           KRV              T +  W   + + VS  +         A+    E+ AD     
Sbjct: 354 KRVLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLTAVEKDADWELIS 413

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R E +V + I A  LW ++    +    P I + D  N        G +  SN C+E   
Sbjct: 414 RTENRVTKTIRARDLWDQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYMF 473

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + +
Sbjct: 474 ---LDDTA-CNLASMNLLTFLKDGEFQVEDYMHASRLWTVTLEISVMMAQFPSKEIAQRS 529

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  A + S E+A E GA+  
Sbjct: 530 YDFRTLGLGYANIGGLLMNMGYSYDSDEGRALGGALTAIMTGVAYATSAEMAGELGAFPG 589

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +                   G         +  + L      +  +   ++  WDE  K 
Sbjct: 590 YSKNAAHMLRVIRNHRQAAYGEAEGYEQLSVKPVPLDHANCPQDGLVDVAKSCWDEALKL 649

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +T G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L
Sbjct: 650 GETHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAAL 709

Query: 811 KQRDLWDEAMISDLKYH---DGSIGNIERI 837
           ++   +  A I ++  +    G+IGN   I
Sbjct: 710 EKLG-YGSAQIEEIVGYAVGHGTIGNAPSI 738


>gi|255263212|ref|ZP_05342554.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
 gi|255105547|gb|EET48221.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
          Length = 1273

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 122/547 (22%), Positives = 205/547 (37%), Gaps = 111/547 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 231 SSYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGAGEALSG- 289

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRK-------------------------------- 445
            GKS G++ FLK+ +  A A+  GG  +                                
Sbjct: 290 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIIDADHPDIEDFINWKVLEEQKVASI 349

Query: 446 -----------GAVCAYLETWHIDVEEFLDLRKNTG--DDRRRTHDMNTANWIPDLFMKR 492
                       A+ A + +W     +  D + N+   D  R    ++    IP+ ++KR
Sbjct: 350 VAGSKMHEEKLNAIFAAIRSWDGAEADAYDPKVNSALKDAVRSAKKVS----IPETYVKR 405

Query: 493 V--------------TQNAGWTLFSPDEVSD--------LHDLYGKEFEIAYENYERQAD 530
           V              T +  W   + + VS         + D + K  E+   ++E   +
Sbjct: 406 VLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVEVD-ADWEL-VN 463

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R    V + I A  LW ++    +    P I + D  N        G +  SN C+E   
Sbjct: 464 RKNGNVSKTIKARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYMF 523

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  + + QF  ++     R     L+  + +     ++  + +
Sbjct: 524 ---LDDTA-CNLASMNLLTFYTDGQFQVEEYMHATRLWTVTLEISVMMAQFPSKEIAQRS 579

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA++ 
Sbjct: 580 YDFRTLGLGYANIGGLLMNMGHGYDSSEGRALCGALTAILTGVSYATSAEIAGELGAFAG 639

Query: 711 F---------------KGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLPWD 747
           +                 +    G +        P+D  G       ELAM+      WD
Sbjct: 640 YGKNKDHMLRVIRNHRNAAYGATGGYEKLATKPVPLDHAGCPDSRLVELAMSS-----WD 694

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
           E     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 695 EALSLGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQS 754

Query: 806 LVNELKQ 812
           +   L++
Sbjct: 755 VPASLEK 761


>gi|288926569|ref|ZP_06420486.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
 gi|288336646|gb|EFC75015.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
          Length = 646

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 192/451 (42%), Gaps = 73/451 (16%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGV---VHSSNLCTEITL 590
           KV ++ISA ALW K++   +++  P + F D     S P  +  +     S+N C EI L
Sbjct: 36  KVKKEISAKALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFRTVSTNPCGEIPL 95

Query: 591 NSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINC----- 640
                    C L SINL ++       +  FD DK     + A R++D+++D+       
Sbjct: 96  CPYDS----CRLISINLYSYVEHPFTPDAHFDMDKFKQHAQLAQRLMDDIVDLEMEKIEL 151

Query: 641 -------------------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                              H  EK K  +   R  G+G+      L  + + Y + EA +
Sbjct: 152 IMEKIKADPQSEEVKGAEYHLWEKIKHKSSLGRRTGVGITAEGDMLAAMGLRYGTQEATD 211

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            + E  + ++ +A ++SV++A+ERGA+  F     +   F    I  L +   +L     
Sbjct: 212 FSVEVHKTLALNAYASSVQMAKERGAFEIFDAKREEHNPF----ILRLKDADPQL----- 262

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFT 800
               +D++ K     G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ + T
Sbjct: 263 ----YDDMVK----YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDT 314

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATA 848
            V+   V+E+   D ++E ++   K+      N            I+ +        ATA
Sbjct: 315 DVHVDFVDEVG--DSFEEYIVYHRKFLTWMQANGLDTEKRYTQEEIDALVSRSPYYKATA 372

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLK--TTYYLRS 905
            ++D +  ++     QKW+D + S+ + L     + L + +Y +AW  G K  T Y   S
Sbjct: 373 NDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWKSGCKGCTIYRDGS 432

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           RS   +  S  K    + +A PV +     H
Sbjct: 433 RSGVMISVSK-KDKKKEASAAPVAEAVPCKH 462


>gi|325293115|ref|YP_004278979.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325060968|gb|ADY64659.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 1272

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 127/566 (22%), Positives = 225/566 (39%), Gaps = 96/566 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQ-GGKRKGA-----------VCAYLETWHIDVEE---- 461
            GKS G++ FLK+ +  A A+   G  R+ A           + AY++ W ++ E+    
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYID-WKVNEEQKVAA 306

Query: 462 ------------------FLDLRKNTGD--------DRRRTHDMNTANWIPDLFMKRVTQ 495
                              ++   + GD          +R       + +P+ ++KRV Q
Sbjct: 307 LVTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPENYVKRVIQ 366

Query: 496 NAG-------WTLFSPDEVSDLH-DLYGK----------EFEIAYEN---YERQADRGEI 534
            A        +  +  D  S+ +  + G+          +F  A EN   +   A R + 
Sbjct: 367 FAQQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGDWNLTA-RKDG 425

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+    + +  P + F    N        G + +SN C+E       
Sbjct: 426 KVMKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S+NLL     A  + D       +R    VL+  + +      +  + ++ 
Sbjct: 483 DDTA-CNLASLNLLQFKDQATKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIAERSYE 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    IPY S E   IA      ++  + + S E+A E G +  F 
Sbjct: 542 YRTLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELGPFPGFA 601

Query: 713 ------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G  +      ++ + L+     +  +   +   WD+  +  +
Sbjct: 602 PNRDNMLRVIRNHRRAAHGLSYGYEGLSVNPVALIHSDCTDQDLVAHATAAWDKALELGE 661

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+ 
Sbjct: 662 KHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPESLRS 721

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIP 838
              + E+ I++++ +    GN+ + P
Sbjct: 722 LG-YSESQIAEIEAYAVGHGNLNQAP 746


>gi|66391288|ref|YP_238597.1| ORF033 [Staphylococcus phage Twort]
 gi|62637218|gb|AAX92329.1| ORF033 [Staphylococcus phage Twort]
          Length = 300

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 27/237 (11%)

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------------NSSSEETAV 599
            E+G+P++ + D  N   P + +G V  SNLC E+T               N +     V
Sbjct: 63  LESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVTQLQEVSDIFPYLQSHNDTIGNDVV 122

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           C LGS+NL+     N  +   L  ++ + +R L  V D+ N   +   +K+N   RAIGL
Sbjct: 123 CTLGSLNLV-----NVVEKGLLKESVDSGIRSLSKVTDLMNVPFLPSVQKANDELRAIGL 177

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M +   L    + Y S E+++IA+     I +++I +S+ELA+E G  +  FK S + 
Sbjct: 178 GAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYSIKSSMELAKETGKVFKGFKESEYY 237

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRL------PWDELKKRVKTIGMRNSNCMAIAP 768
            G      I    E R + A     ++       W+ L K VK  GM N     +AP
Sbjct: 238 TGEVFSSYIQKSHEPRTKKAKKVLEKVYIPTEEDWNSLSKDVKEYGMYNGYLNNLAP 294


>gi|15889037|ref|NP_354718.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|81591416|sp|Q8UEM4|NRDJ_AGRT5 RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|15156830|gb|AAK87503.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 1272

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 131/568 (23%), Positives = 229/568 (40%), Gaps = 100/568 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQ-GGKRKGA-----------VCAYLETWHIDVEE---- 461
            GKS G++ FLK+ +  A A+   G  R+ A           + AY++ W ++ E+    
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYID-WKVNEEQKVAA 306

Query: 462 ------------------FLDLRKNTGD--------DRRRTHDMNTANWIPDLFMKRVTQ 495
                              ++   + GD          +R       + +P+ ++KRV Q
Sbjct: 307 LVTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPENYVKRVIQ 366

Query: 496 NA-------GWTLFSPDEVSDLH-DLYGK----------EFEIAYENYERQ--ADRGEIK 535
            A        +  +  D  S+ +  + G+          +F  A EN        R + K
Sbjct: 367 FAEQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGNWNLTARKDGK 426

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW K+    + +  P + F    N        G + +SN C+E       +
Sbjct: 427 VMKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           +TA CNL S+NLL  F +    + D       +R    VL+  + +      +  + ++ 
Sbjct: 484 DTA-CNLASLNLL-QFKDAKTKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIAERSYE 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    IPY S E   IA      ++  + + S E+A E G + SF 
Sbjct: 542 YRTLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELGPFPSFA 601

Query: 713 ------------------GSLWDQGVFPIDSIGLL-AEVRDE-LAMNRTSRLPWDELKKR 752
                             G         ++ + L+ A+  D+ L  + T+   WD+  + 
Sbjct: 602 PNRDNMLRVIRNHRRAAHGQSEGYEGLSVNPVALIHADCTDQDLVAHATA--AWDKALEL 659

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L
Sbjct: 660 GEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPESL 719

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +    + E+ I++++ +    GN+ + P
Sbjct: 720 RSLG-YSESQIAEIEAYAVGHGNLNQAP 746


>gi|254510648|ref|ZP_05122715.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
 gi|221534359|gb|EEE37347.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
          Length = 1232

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 138/599 (23%), Positives = 221/599 (36%), Gaps = 121/599 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 207 SAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEALSG- 265

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGA------------------------------ 447
            GKS G++ FLK+ +  A A+  GG  + A                              
Sbjct: 266 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVIEEQKVASI 325

Query: 448 -------------VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV- 493
                        +   + TW    E+  D  KN  D  +          IP+ ++KRV 
Sbjct: 326 VAGSKMHEKMLNGIFEAIRTWDGATEDAYDPNKN--DSLKSAVREAKKVAIPETYIKRVL 383

Query: 494 -------------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD-----RGEI 534
                        T +  W   +   VS  +         A+    E+ AD     R + 
Sbjct: 384 DYARQGHDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLTAVEKDADWELINRTDG 443

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+    +    P I F D  N        G +  SN C+E       
Sbjct: 444 KVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMF---L 500

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           ++TA CNL S+NLL    + +F         R     L+  + +     ++  + ++  R
Sbjct: 501 DDTA-CNLASMNLLTFLKDGEFQAADYMHASRLWTLTLEISVTMAQFPSKEIAQLSYDFR 559

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  +   Y S E   I       ++  A + S E+A E G +  ++ +
Sbjct: 560 TLGLGYANIGGLLMNMGYSYDSDEGRAICGALTAIMTGVAYATSAEIAGELGPFKGYERN 619

Query: 715 L------------WDQGV-----------FPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                          QGV            P+D      +   +LAM+      WDE   
Sbjct: 620 ADHMLRVIRNHRRASQGVTEGYEKLAVKPVPLDHGNCPDKRLIDLAMS-----AWDEALN 674

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + 
Sbjct: 675 LGEKNGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSA 734

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           L++   +  A I ++  +    G+IGN   I           P++L K+ A   +AF+I
Sbjct: 735 LEKLG-YSSAQIEEIVGYAVGHGTIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDI 792


>gi|167589131|ref|ZP_02381519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ubonensis Bu]
          Length = 594

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 148/633 (23%), Positives = 241/633 (38%), Gaps = 90/633 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           L   +L DRY      +R     A F RVA  LAL E    +  VE  FY  +       
Sbjct: 6   LSAAVLADRYARAGETTR----AAIFRRVAHALALAEPMTSRARVEQLFYRNMQRGAIGA 61

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL----------QENAMLAKYSGGLGN 402
               + N+GT     + +CF+  V   + G+               E  +     GG+G 
Sbjct: 62  GR-IMANAGTGAEGTMVNCFVHPV--AMPGVASLAAVHAALAQALDEARITLLMGGGVGY 118

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D++P+    A+       +  V   +   +    A+   G R+GA  A L   H D+ EF
Sbjct: 119 DFSPLPPATAY-ERRGADTPDVCAAIDRFDIVCRALPYAGPRRGAQMAVLRCDHPDIIEF 177

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           ++ +      RRR    + A  + D FM+ V  N  WTL                     
Sbjct: 178 VEAKHG----RRRWPTFSLAVGVTDAFMEAVAGNLPWTL-------------RHRVPPCS 220

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               + A       +  + A ALW  ++    ++  P + F D  +     +    + ++
Sbjct: 221 PACTQTALPDGSWTYATVPARALWHVIVNEARDSSEPRLLFLDTIDAADSLRAHERIDAT 280

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDN 634
           + C+E  L +         LG I+L + F  +         FD+   A  +R  VR+LDN
Sbjct: 281 DPCSEQPLPAYGSSV----LGPIDL-SRFVRHPFGVDGKPNFDFTGFADAVRVQVRMLDN 335

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID+    +    +  H  R IG+G+ G   AL +L + Y    A  +A E    +  HA
Sbjct: 336 AIDLTVWPLAAHAREAHEKRRIGVGVTGLADALTMLRLRYDCGAARMVAREIALTMRHHA 395

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            SAS  LA ERG + ++  + +  G        L   VR+ +A +               
Sbjct: 396 FSASASLAAERGVFPAYDAADYLDGA--AHRAPLPVTVRETIARH--------------- 438

Query: 755 TIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G+RNS+ M+ AP  +++   G   S  I+P+   +  +   +GD         N L  
Sbjct: 439 --GLRNSHLMSFAPAGSVSVAFGDNCSHGIEPAIDWVERREVRTGD---------NHLHA 487

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               + A     + H    G    +PD   K    A +I P   +   +  Q  +D A S
Sbjct: 488 IRAENHAYRLFRQLH----GEHAPLPDYFVK----AADIAPADHVSMLAALQPCVDAAIS 539

Query: 873 LNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLR 904
             + +D   S  ++D ++  AW   LK+    R
Sbjct: 540 KTVNVDRRCSLAQIDALFFAAWRERLKSIRIFR 572


>gi|124027730|ref|YP_001013050.1| ribonucleotide reductase, alpha subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978424|gb|ABM80705.1| predicted ribonucleotide reductase, alpha subunit [Hyperthermus
           butylicus DSM 5456]
          Length = 991

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           K  A  LW K++   + +G P + F D  N  +P   +G V+++N C E  L        
Sbjct: 420 KYPARKLWEKIVENAWASGDPGLFFPDNHNKWNPTPWLGAVYATNPCGEQPLYPFES--- 476

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNLGS+++  + ++ +FD  +  S I+ AV  +D VID N H   +   +N   R IGL
Sbjct: 477 -CNLGSMSIDKYISDGKFDLAQFMSDIQLAVDSMDAVIDFNKHPDPRQTVANKFTRKIGL 535

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           G+MG   AL  L  PY S EAV      M  +  ++   S EL  + G   +F+   +D
Sbjct: 536 GIMGLADALAKLGYPYDSEEAVAFTLIVMAALEVYSWKRSWELGAKLGHAPAFECRRYD 594



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           D  F Y  +++L  RY +    G  +E P     RVA G + +        V+ Y LL +
Sbjct: 67  DKGFTYNAIRVLLARYMVRNEYGVPMETPSMVMARVAWGFSTRVD-----PVKLYRLLIA 121

Query: 349 FHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             FM ++PTLFN      +  LS+C++T V DD+  I  A    AM  K+ GG G  ++ 
Sbjct: 122 RKFMFNSPTLFNMYVDGAYGTLSACYVTPVYDDMKAIMDAATVQAMTFKWGGGQGFSFSE 181

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +R     +  T G++ G + F+++ +     V QGGKR+GA    +  WH D+
Sbjct: 182 LRPRWDIVRSTGGQASGPLSFMQIYDMVTETVKQGGKRRGANMGIMHAWHPDI 234


>gi|84515607|ref|ZP_01002969.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510890|gb|EAQ07345.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
          Length = 1202

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 121/543 (22%), Positives = 198/543 (36%), Gaps = 103/543 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 181 SSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG- 239

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRK-------------------------------- 445
            GKS G++ FLK+ +  A A+  GG  +                                
Sbjct: 240 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWKVIEEQKVASI 299

Query: 446 -----------GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV- 493
                       A+ A +E+W  D EE       T +           + IP+ ++KRV 
Sbjct: 300 VAGSKMHERYLNAIFAAIESW--DGEEIAAYDPKTNETLAAAVKDAKRSAIPETYIKRVL 357

Query: 494 -------------TQNAGWTLFSPDEVSDLHD----LYGKEFEIAYENYE--RQADRGEI 534
                        T +  W   +   VS  +          F  A EN E  +  +R   
Sbjct: 358 DYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTDAFLKAVENDEMWKLINRKNG 417

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +V + I A  LW ++    +    P I + D  N        G +  SN C+E       
Sbjct: 418 EVAKIIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF---L 474

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           ++TA CNL S+NLL  + + QF  +      R     L+  + +     ++  + ++  R
Sbjct: 475 DDTA-CNLASMNLLTFYKDGQFQVEDYMHATRLWTVTLEISVMMAQFPSKEIAQRSYDFR 533

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  +   Y S E   +       ++  + + S E+A E GA+  +  +
Sbjct: 534 TLGLGYANIGGLLMNMGFGYDSAEGRAMGAALTAIMTGVSYATSAEMAGELGAFPGYAKN 593

Query: 715 -----------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                                    D    P+D      +   +LA+       WDE  +
Sbjct: 594 EKHMLRVIRNHRNAAYGKTDGYEALDVKPVPLDHANCPDDRLVKLAVE-----SWDEALR 648

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 649 LGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAA 708

Query: 810 LKQ 812
           L++
Sbjct: 709 LEK 711


>gi|302793901|ref|XP_002978715.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
 gi|300153524|gb|EFJ20162.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
          Length = 211

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 24/177 (13%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W   K+ V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 7   SGRWDWPASKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFV 66

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+N+L    +W                     PD   ++  T +EI     ++ A
Sbjct: 67  VVNKHLLNDLTDLGIWT--------------------PDLNIQVGLTVWEIKQ---VDMA 103

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YYLRS++A    K T+
Sbjct: 104 VERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 160


>gi|99080992|ref|YP_613146.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99037272|gb|ABF63884.1| ribonucleoside-diphosphate reductase class II [Ruegeria sp. TM1040]
          Length = 1217

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 132/598 (22%), Positives = 220/598 (36%), Gaps = 111/598 (18%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  
Sbjct: 178 TKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEK 237

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA-------------------------- 447
           + G  GKS G++ FLK+ +  A A+  GG  + A                          
Sbjct: 238 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVLEEQK 296

Query: 448 -----------------VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                            +   L TW    E+  D  +N    +        A  IP+ ++
Sbjct: 297 VASIVAGSKMHEKMLNGIFEALRTWDGLSEDAYDPAENPALKKAIREAKKVA--IPETYI 354

Query: 491 KRV--------------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD----- 530
           KRV              T +  W   +   VS  +         A+    E+ AD     
Sbjct: 355 KRVLDYARQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADWELIN 414

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW K+    +    P I F D  N        G +  SN C+E   
Sbjct: 415 RTDGQVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  +    F  +      R     L+  + +     ++  + +
Sbjct: 475 ---LDDTA-CNLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFPSKEIAQLS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  A + S E+A E G ++ 
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIASELGPFAG 590

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G+        +  + L  +   +  +   +   WDE  + 
Sbjct: 591 YERNADHMLRVMRNHRNAAYGATEGYDKLTVKPVPLDLQNCPDARLTELAMSAWDEAVRL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L
Sbjct: 651 GEEHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSAL 710

Query: 811 KQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           +    +  A I ++  +    GSIGN   I           P++L K+ A   +AF+I
Sbjct: 711 EGLG-YSSAQIEEIVSYAVGHGSIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDI 767


>gi|194015491|ref|ZP_03054107.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
 gi|194012895|gb|EDW22461.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
          Length = 417

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 181/453 (39%), Gaps = 79/453 (17%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD F++   ++    +F P  V   +  +  E +I    Y+   +   ++  R I+   
Sbjct: 1   MPDKFIELAREDRPAYVFYPHTVYKAYGTHLDEMDIG-AMYDELVNNPAVRKER-INPRQ 58

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------ 598
           L  KM  +  E+G+P++ F+D  N      H+  V  SNLC+E+   S+  E        
Sbjct: 59  LLEKMAVLRSESGYPYMMFQDNVNREHALNHISRVKFSNLCSEVLQASTVSEYTDYGEPD 118

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNH 651
                  CNLGS+N+    A    +     + ++ AV  L  V +  N        K+N 
Sbjct: 119 DIGLDISCNLGSLNIANVMAGGSIE-----NAVKLAVDALTVVSESTNIKNAPAVAKANR 173

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
             R+IGLG M     L    I Y S EA + A+     +++  +  S ELAQE G  +  
Sbjct: 174 EMRSIGLGAMNLHGYLAQNGIAYESEEARDFANVFFATVNYWTLVRSNELAQETGTTFEG 233

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRT--------SRLPWDELKKRVKTIGMRNSN 762
           ++GS +  G +  D   L  + R +    R         + L W  L   V   G+ ++ 
Sbjct: 234 YEGSTYASGEY-FDKY-LEGDYRPKTDKVRALFKDIVIPTPLEWQVLSDNVNLHGLYHAY 291

Query: 763 CMAIAPTATIANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            +AIAP  +I+ +   + S+ P        +Y N      M G  +  N F   E     
Sbjct: 292 RLAIAPNGSISYVQSATASVMPIMERIEERTYGNSKTYYPMPG-LSPQNWFFYKE----- 345

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                            A+++D   +++  +  Q+ +DQ  S  
Sbjct: 346 ---------------------------------AYDMDMFKVVDMIATIQQHVDQGISFT 372

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           L+L D  + + L+ I   A   G+KT YY R++
Sbjct: 373 LFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 405


>gi|163795180|ref|ZP_02189148.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
 gi|159179578|gb|EDP64107.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
          Length = 1248

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 134/578 (23%), Positives = 222/578 (38%), Gaps = 100/578 (17%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKLTRSKSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA------------VCAYLETW 455
           RG    + G  GKS G++ FLK+ +  A A+  GG  + A            + AY+E W
Sbjct: 239 RGENESLAG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVSVDIDHPDIEAYIE-W 296

Query: 456 HIDVEE-----------------------FLDLRKNTGD---------DRRRTHDMNTAN 483
            + VEE                        +D + + GD         + +       A 
Sbjct: 297 KV-VEEQKVAALVAGSKLAARNMKAVMKACVDAKASLGDAAYEPTANPELKAAIKSAKAA 355

Query: 484 WIPDLFMKRVTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEIAYE-- 523
            IP  +++RV Q A  G+T      +  D  SD +  + G+          EF  A E  
Sbjct: 356 MIPLNYVQRVIQFAKQGFTEIDFKTYDTDWDSDAYLTVSGQNSNNSVRVSDEFLQAVEAD 415

Query: 524 ---NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
              N  R+ D    K+   + A  LW K+    +    P + +    N        G ++
Sbjct: 416 GDWNLIRRTDG---KIAATVKANDLWEKIAHAAWACADPGLQYDTTINDWHTCPAGGRIN 472

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           +SN C+E       ++TA CNL S+NL+    A+  F+        R     L+  + + 
Sbjct: 473 ASNPCSEYMF---LDDTA-CNLASMNLMQFQRADGSFNVAAYEHATRLWTVTLEIAVLMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  K ++ +R +GLG       L  + + Y SP+   +       ++  A + S 
Sbjct: 529 QFPSKEIAKLSYDYRTLGLGYANIGGLLMAMGLSYDSPKGRAMCGALTAVMTGVAYATSA 588

Query: 700 ELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           ELA E GA+  +K                  G +       I  + L A       +   
Sbjct: 589 ELAGEIGAFPRYKENAESMLRVIRNHRRAAHGDVTGYESLSITPVPLDAASCPSSELVEA 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 ARRAWDSALALGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            + + +V +  Q   +DEA +  +  +    G ++  P
Sbjct: 709 KIINRVVPQALQTLGYDEAEVEAIVRYAVGYGTLKGAP 746


>gi|46309417|ref|YP_006307.1| ORF37 [Agrotis segetum granulovirus]
 gi|46200634|gb|AAS82701.1| ORF37 [Agrotis segetum granulovirus]
          Length = 615

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 226/505 (44%), Gaps = 65/505 (12%)

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL--FNSGTRHPQLSSC 371
           +E P+ F  R++ G+ +K  ++EK+      LLSS   + S+      N        S+C
Sbjct: 29  VETPEEFCQRISRGM-VKLDDEEKKIAHATALLSSVSIIPSSALCQHLNLQRNDTTPSAC 87

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYS-----GGLGNDWTPVRGLGAHIHGTNGKS-QGVI 425
            LT      Y  F  L E   +AK +      G+G D+  +R  G+++ G    S   + 
Sbjct: 88  HLTVFSHS-YEAFSKLNELDRIAKMAIMGTGVGVGGDY--LRYKGSNVAGELKNSFVEIC 144

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +L  A    V+      RK  V  +L   HI     L LR+    + R T ++     I
Sbjct: 145 QYLNAATTLNVSA-----RKSRVAVFLSLHHICSMICLTLRQ---QNARVTSNIFYGVMI 196

Query: 486 PDLFM--KRVTQNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RK 539
           P+ FM  +R  +NA W  F  +   E   L+D YG+E+E     Y R  ++   K++ +K
Sbjct: 197 PNFFMEMQRKDKNAMWYFFDGNTTLEGLSLNDCYGEEYE---SLYWRMVEK---KLYVKK 250

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  +  ++++ L E G P++ ++D  N+ +  + +G + + NLCTEI  ++ S+ +++
Sbjct: 251 MYATQVLGELISCLTENGFPYVVWRDHVNMFNNHRDLGTIQTLNLCTEICQHAGSDSSSM 310

Query: 600 CNLGSINLLAHFANNQFD--YDKLAST-----IRTAVRVLDNV----IDINCHT------ 642
           C L ++N+ A+  +      Y+++        +       D      + ++C T      
Sbjct: 311 CTLMTVNIAAYCEDYPLCKMYEEIVEELAEYGLHQCCPQFDETNEARLLMHCFTASYTST 370

Query: 643 --IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM--EFISFHAISAS 698
             + +      + R +G+   G   A+++L    A+     I   ++  E++    + +S
Sbjct: 371 FLLNRLLGDKTSRRELGVTPTGLFDAVYILCGRDAAYNDAMIHYSALVAEYMYIGCVLSS 430

Query: 699 VELAQERGAYS-SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           +   ++      +F  S + +G+F  D    L  V   L+      L W+ ++  +K  G
Sbjct: 431 IVYNRKFNVICVNFSKSEFAKGLFQFD----LRNVTPSLS------LLWNRIRPFMKK-G 479

Query: 758 MRNSNCMAIAPTATIANICGVSQSI 782
           M NS   A APTAT + +  V++S+
Sbjct: 480 MANSMLTAQAPTATTSLLTNVTESV 504


>gi|312195035|ref|YP_004015096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
 gi|311226371|gb|ADP79226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
          Length = 1016

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 203/509 (39%), Gaps = 55/509 (10%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           Y LL    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G
Sbjct: 187 YMLLHQM-FSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILNWYREEGLIFKGGSGSG 245

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ 
Sbjct: 246 LNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIV 304

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGK 516
           EF++ +    D  R   D   A +  DL  K +T    QNA  ++   D+      +   
Sbjct: 305 EFVETKAREEDKVRALRD---AGFDMDLGGKDITSVQYQNANNSVRVTDDF-----MRAV 356

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +  I+++   R   R    V   I A  L RK+ T  +E   P I +    N        
Sbjct: 357 QDGISFDLRARMDHR----VIESIDARGLMRKIATAAWECADPGIQYDGVINDWHTTPEA 412

Query: 577 GVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDN 634
           G + +SN C+E + L++SS     CNL S+NL+    ++  FD +     +   +  +D 
Sbjct: 413 GRISASNPCSEYMHLDNSS-----CNLASLNLMRFLRSDLTFDVEGFVHAVELIITAMDI 467

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I        +  +    +R +G+G     + L      Y S     +A      ++  A
Sbjct: 468 SICFADFPTPQITEVTRAYRQLGIGYANLGALLMASARAYDSEGGRTLAAAITSLMTGTA 527

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
              S ELA   G Y  +            D+ G    +R   A N   R    E  + + 
Sbjct: 528 YRRSAELAGVVGPYDGYA----------RDADGHRRVIRKHAAANDAVRSVHSEDARILA 577

Query: 755 TIGMRNSNCMAI--------------APTATI--ANICGVSQSIDPSYQNLYVKSNMSG- 797
             G   + C+ I              APT TI  A  C  +  I+P    + +K  + G 
Sbjct: 578 AAGQEWAKCLTIGERDGWRNAQASLLAPTGTIGLAMDCDTT-GIEPDLALVKMKKLVGGA 636

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY 826
              +VN  +   L+     +E + + ++Y
Sbjct: 637 SMKIVNQTVPAALRALGYTEETLEAIVEY 665


>gi|312115570|ref|YP_004013166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220699|gb|ADP72067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1254

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 120/539 (22%), Positives = 209/539 (38%), Gaps = 93/539 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRLRSEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E F++ +          
Sbjct: 248 GGKSSGLMSFLKIGDKAAGAIKSGGTTRRAAKMVIVDADHPDIEAFINWKVLEEQKVAAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                +  G+D          +R      A ++PD +++RV   
Sbjct: 308 VAGSKICAKHLAAIMRACVNCEGHGEDCFDPLKNVALKREIKAARAAFVPDAYIQRVIHF 367

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQAD----------------RGEIKV 536
           A     S +  S   D  G+ +         N  R  D                R   K 
Sbjct: 368 ARQGFKSIEFPSFDTDWEGEAYRTVGGQNSNNTVRVDDSFLRAVEVDSDWHLMSRTTDKA 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A AL  ++    + +  P I F    N        G + +SN C+E       ++
Sbjct: 428 VKTLKARALMDQISEAAWASADPGIQFHTTINDWHTCPASGPIRASNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           TA CNL S+NLL+           D +  A   R    VL+  + +     ++  + ++ 
Sbjct: 485 TA-CNLASLNLLSFRPQGGEGRLVDAEAFAHACRLWTVVLEISVTMAQFPSKEIAQLSYD 543

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L +  + Y S E   +A      ++  + + S E+A+E GA++ ++
Sbjct: 544 FRTLGLGYANLGGLLMVSGLGYDSDEGRALAAAISALMTGVSYATSAEMAKELGAFAGYE 603

Query: 713 GSL----------------WDQG--VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +                  D G  +     + L   V  +  +   +R  WD++    +
Sbjct: 604 PNASHMLRVMKNHRRAAYGRDNGYELLSTSPVPLKDGVCPQTDLVTVAREVWDDVISLGQ 663

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELK 811
             G RN+    IAPT TI  +    +  I+P +  + + K +  G F ++N  +   L+
Sbjct: 664 MHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLSGGGYFKIINRAVPEALR 722


>gi|288920762|ref|ZP_06415062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
 gi|288347838|gb|EFC82115.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
          Length = 1009

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 134/604 (22%), Positives = 237/604 (39%), Gaps = 70/604 (11%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 134 FSFNSPVWFNVGTSAPQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 193

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ EF++ +  
Sbjct: 194 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAR 252

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL  + +     QNA  ++   DE      + G  F++    
Sbjct: 253 EEDKIRALRD---AGFDMDLGGRDIASVQYQNANNSVRVNDEFMRAV-VDGTSFDLRA-- 306

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R + +V   + A  L+  +    +E   P I +    N        G + +SN 
Sbjct: 307 ------RLDNRVIESVDARGLFTTIAQAAWECADPGIQYDGTINDWHTCPESGRISASNP 360

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NL+     +  FD +   +++   +  +D  I      
Sbjct: 361 CSEYVHLDNSS-----CNLASLNLMKFLRPDRTFDAEAFVASVELIITAMDISICFADFP 415

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +       +R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 416 TPEITTVTRAYRQLGIGYANLGALLMASARAYDSEGGRSLAAAITSLMTATAYRRSAELA 475

Query: 703 QERGAYSSF------------KGSLWDQGVFPI--DSIGLLAEVRDELAMNRTSRLPWDE 748
              GAY  F            K +  +  V  +  +   L+A    E          W+ 
Sbjct: 476 GTVGAYDGFARNADAHRRVVRKHAAANDAVRAVHTEDARLIAAASKE----------WER 525

Query: 749 LKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSF 805
                +  G RN+    +APT TI  A  C  +  I+P    + +K  + G    +VN  
Sbjct: 526 ALSVGEKNGWRNAQVSLLAPTGTIGLAMDCDTT-GIEPDLALVKMKKLVGGASMKIVNQT 584

Query: 806 LVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
           +   L+     +   EA++  +  H    G++   P  L+  H   F+       I PM 
Sbjct: 585 VPAALRALGYPEETTEAIVEFIAEH----GHVVDAP-GLRPEHYEVFDCAIGDRAISPMG 639

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q ++  A S  + +   +    ++ IY + W +GLK     R         +
Sbjct: 640 HVRMMAAVQPFLSGAISKTVNMPSTATVADVEEIYLEGWRLGLKALAIYRDNCKVGQPLT 699

Query: 915 TLKG 918
            +KG
Sbjct: 700 DVKG 703


>gi|111225058|ref|YP_715852.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111152590|emb|CAJ64331.1| Ribonucleoside-diphosphate reductase M1 chain (Vitamin
           B12-dependent ribonucleotide reductase) [Frankia alni
           ACN14a]
          Length = 1012

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 136/605 (22%), Positives = 237/605 (39%), Gaps = 70/605 (11%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R 
Sbjct: 135 FSFNSPVWFNVGTPAPQQVSACFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS 194

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D+ EF++ +  
Sbjct: 195 -SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAR 253

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
             D  R   D   A +  DL  + +     QNA  ++   DE      + G  F++    
Sbjct: 254 EEDKIRALRD---AGFDMDLGGRDIASVQYQNANNSVRVTDEFMRAV-VDGSSFDLRA-- 307

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R + +    I A  L+R +    +    P I +    N        G + +SN 
Sbjct: 308 ------RLDGRTIETIDAKGLFRTIAEAAWACADPGIQYDGTINDWHTCPESGRISASNP 361

Query: 585 CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E + L++SS     CNL S+NLL     +  FD +   + +   +  +D  I      
Sbjct: 362 CSEYVHLDNSS-----CNLASLNLLTFLRPDRTFDAEGFVAAVELIITAMDISICFADFP 416

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +       +R +G+G     + L      Y S     +A      ++  A   S ELA
Sbjct: 417 TPEITAVTRAYRQLGIGYANLGALLMASARAYDSDGGRALAASITSLMTATAYRRSAELA 476

Query: 703 QERGAYSSF------------KGSLWDQGVFPI--DSIGLLAEVRDELAMNRTSRLPWDE 748
              GAY  F            K S  +  V  +  +   +LA    E          W  
Sbjct: 477 GIVGAYDGFARNADAHRRVVRKHSAANDAVRSVHTEDTRVLAAASKE----------WAR 526

Query: 749 LKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSF 805
            +      G RN+    +APT TI  A  C  +  I+P    + +K  + G    +VN  
Sbjct: 527 AQTLGDKHGWRNAQVSLLAPTGTIGLAMDCDTT-GIEPDLALVKMKKLVGGASMRIVNQT 585

Query: 806 LVNELKQRDLWDE---AMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMW 855
           +   L+     +E   A++  +  H    G++   P  L+  H   F+       I PM 
Sbjct: 586 VPAALRALGYPEETLEAIVEFIAEH----GHVVDAPG-LRPEHYDVFDCAIGERAISPMG 640

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q ++  A S  + +   +  ++++ IY + W +GLK     R         S
Sbjct: 641 HVRMMAAVQPFLSGAISKTVNMPSTATVEEVEEIYLEGWRLGLKALAIYRDNCKVGQPLS 700

Query: 915 TLKGV 919
            ++G 
Sbjct: 701 DVRGA 705


>gi|21673413|ref|NP_661478.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           tepidum TLS]
 gi|21646513|gb|AAM71820.1| ribonucleotide reductase family protein [Chlorobium tepidum TLS]
          Length = 1129

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 223/555 (40%), Gaps = 104/555 (18%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R          G S 
Sbjct: 153 PQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLR-GSGEKLSGGGSSS 211

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT------------ 469
           G++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 212 GLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASMVAGSK 271

Query: 470 ----------------GDDRRRTHDMNTA------NWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    +NT         +P  ++ RV      G+T    +
Sbjct: 272 ICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPMSYILRVLALVEQGYTTLDFE 331

Query: 506 EV-----SDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVALWR 547
           E      S+ +   G            EF  A +N E     +R   K  R + A  LW 
Sbjct: 332 EYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWVLRERTTGKEARAVRARDLWE 391

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K++   ++   P + F    N        G +++SN C+E       ++TA CNL S+N 
Sbjct: 392 KIVMSAWKCADPGLQFDSTINEWHTCPKSGRINASNPCSEYMF---LDDTA-CNLASLN- 446

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS----NHTHRAIGLGLMGF 663
           LAHF + +    K+ + ++ A  +   V++I+        K     ++  R +GLG    
Sbjct: 447 LAHFLDEETGKIKI-TELQHASALWTVVLEISVLMAHFPSKDIARLSYEFRTLGLGFANL 505

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD------ 717
              L +L IPY SP A+ IA      ++  A   S ++A+E GA++ ++ +  D      
Sbjct: 506 GRVLMVLGIPYDSPRALAIAGGIAAIMTGQAYVTSADMAKELGAFARYRENSDDMLRVIR 565

Query: 718 --------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                         +G+  +   G+ +E   +       ++ WDE  K+ K  G RN+  
Sbjct: 566 NHSRAARNSSEEEYEGLV-VKPRGIDSEYCPKELFEAAGKV-WDEALKKGKKYGFRNAQV 623

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
             IAPT TI  +    +  I+P +  +  K    G  F +VN  +   L +         
Sbjct: 624 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALAR--------- 674

Query: 822 SDLKYHDGSIGNIER 836
             L Y D  I  IE+
Sbjct: 675 --LGYSDKQIEEIEK 687


>gi|7532767|emb|CAB87136.1| aerobic ribonucleotide reductase class Ia [Yersinia enterocolitica]
          Length = 209

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH++
Sbjct: 28  GIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLE 87

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---G 515
           VE  L L+ N G +  R   M+    I  L  +R+ +    TLFSP +V  L+D +    
Sbjct: 88  VESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGEDITLFSPSDVPGLYDAFFADQ 147

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            EFE  Y  YE+     +    +++ AV L+  M+     TG  +I   D CN  SP
Sbjct: 148 DEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSP 200


>gi|193212265|ref|YP_001998218.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobaculum
           parvum NCIB 8327]
 gi|193085742|gb|ACF11018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobaculum parvum NCIB 8327]
          Length = 1152

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 136/556 (24%), Positives = 223/556 (40%), Gaps = 106/556 (19%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R          G S 
Sbjct: 178 PQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLR-GSGEKLSGGGSSS 236

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT------------ 469
           G++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 237 GLMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAKEEDKVASMVAGSK 296

Query: 470 ----------------GDDRRRTHDMNTA------NWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    +NT         +P  ++ RV      G+T    +
Sbjct: 297 ICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPMSYILRVLALVEQGYTTLDFE 356

Query: 506 EV-----SDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVALWR 547
           E      S+ +   G            EF  A +N E     +R   K  R + A  LW 
Sbjct: 357 EYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWVLRERTTGKDARAVRAKDLWE 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K++   ++   P + F    N        G +++SN C+E       ++TA CNL S+N 
Sbjct: 417 KIVMSAWKCADPGLQFDSTINEWHTCPVSGRINASNPCSEYMF---LDDTA-CNLASLN- 471

Query: 608 LAHFANNQFDYDKL-----ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           LAHF + +    K+     AS + T   VL+  + +     E   + ++  R +GLG   
Sbjct: 472 LAHFLDEESGKIKITELQHASALWTV--VLEISVLMAHFPSEDIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD----- 717
               L +L IPY SP A+ IA      ++  A   S +LA++ GA++ ++ +  +     
Sbjct: 530 LGRILMVLGIPYDSPRALAIAGGIAALMTGQAYVTSADLAKDHGAFARYRENSNEMLRVI 589

Query: 718 ---------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                          +G+  +   G+ +E   +       ++ WDE  KR K  G RN+ 
Sbjct: 590 RNHRRAAHNSAEEEYEGLV-VKPRGIDSEYCPKELFTAAGKV-WDEALKRGKKYGFRNAQ 647

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI  +    +  I+P +  +  K    G  F +VN  +   L +        
Sbjct: 648 VSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALAR-------- 699

Query: 821 ISDLKYHDGSIGNIER 836
              L Y D  I  IE+
Sbjct: 700 ---LGYSDTQIEEIEK 712


>gi|120609366|ref|YP_969044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax citrulli AAC00-1]
 gi|120587830|gb|ABM31270.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax citrulli AAC00-1]
          Length = 1226

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 144/334 (43%), Gaps = 53/334 (15%)

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVL 632
           ++ LC              C+LG I +L  F  +         FD+D  A+++ T VR L
Sbjct: 682 ANGLCVHNCGEQPLPSYGCCDLGPI-ILPRFVRHPFGFAGEPAFDFDAFAASVATQVRAL 740

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNV+D+    + + +  +   R IG+G  G  + L +L + Y +     +A    E +  
Sbjct: 741 DNVLDVTFWPLPQQRAESAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAECMRD 800

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +ASVELA+E+G +  F            D+ G LA           SRLP   L++ 
Sbjct: 801 AAYAASVELAKEKGVFPKF------------DAAGYLAP------GTFASRLP-AALQEA 841

Query: 753 VKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++T G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + + V + 
Sbjct: 842 IRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-TSEYAVED- 899

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                W        + +    G++  +PD       +A ++     I      Q +ID A
Sbjct: 900 ---HAW--------RLYGALGGDVNALPD----YFVSALQMPAAGHIAMMEAVQPFIDTA 944

Query: 871 --QSLNLYLDEPSGKKLDFIYRQAW---LMGLKT 899
             +++N+  D P  +    +Y  AW   L GL T
Sbjct: 945 ISKTVNMPADYPY-EDFKNLYLHAWRARLKGLAT 977



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 35/284 (12%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVE---FYNL----LSSFHFMCSTPTLFNSGTRHPQLSS 370
           +  + RVA  LA  E  + + A+E     NL    + +   M +  T   +      L +
Sbjct: 40  ETLYRRVARALASVEAPEVREAIEARFLANLRAGAIGAGRIMSAAGTAIQA-----TLIN 94

Query: 371 CFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           CF+  V D + G        I+ AL+E A   +  GG+G D++ +R  GA + GT   + 
Sbjct: 95  CFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVKGTASMAS 154

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G   ++ V + +   V   G R+GA    L   H DV +F+  ++  G    R ++ N +
Sbjct: 155 GPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFITAKRTPG----RWNNFNVS 210

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             +PD F++ V  +A W L  P           +      E   RQ   G+  V+R + A
Sbjct: 211 VGVPDAFVQAVLDDAPWELVHP----------ARPGAALREEGARQRADGQW-VYRTLPA 259

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             LW  ++   ++   P I F D  N  +   +   + ++N C 
Sbjct: 260 RELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNPCV 303


>gi|145220004|ref|YP_001130713.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206168|gb|ABP37211.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 1149

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 208/525 (39%), Gaps = 99/525 (18%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVNDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSSGEKLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRK-------------- 467
            ++ FLK+ + +A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 238 -LMSFLKIFDSSAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAREEDKVASLVAGSR 296

Query: 468 --------------NTGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR R   +           +P  ++ RV      G+T    D
Sbjct: 297 ICSRFLQAIVAEALENGADRTRNPKLQRLIENALQRAVPMNYIIRVLALVEQGFTSLDFD 356

Query: 506 EV-----SDLHDLYG-----------KEFEIAYEN------YERQADRGEIKVFRKISAV 543
           E      S+ +   G            EF  A EN       ER   +G     R ++A 
Sbjct: 357 EYDTNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWTLKERTTGKGA----RAVNAR 412

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW+K+L   ++   P + F    N        G +++SN C+E       ++TA CNL 
Sbjct: 413 DLWQKILLSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMF---LDDTA-CNLA 468

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS----NHTHRAIGLG 659
           S+NL+ HF + +    K+   +R A  +    ++I+        K     ++  R +GLG
Sbjct: 469 SLNLI-HFLDEKSGTIKV-DELRHAAGLWTIALEISVLMAHFPSKEIARLSYEFRTLGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG------ 713
                + L +L IPY SP+A+ +A      I+  A   S ELA++ G +  +        
Sbjct: 527 FANLGTVLMVLGIPYDSPKALALAGSISALITGQAYITSAELARDLGPFDGYAANSKEML 586

Query: 714 -------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                        S  +     +   G+ +E           ++ WDE  ++ K  G RN
Sbjct: 587 RVIRNHQRAAHNKSQEEYEGLSVKPRGIDSEYCSNELFAAVGKV-WDEALQKGKKHGFRN 645

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           +    IAPT TI  +    +  I+P +  +  K    G  F +VN
Sbjct: 646 AQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVN 690


>gi|194335987|ref|YP_002017781.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308464|gb|ACF43164.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1141

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 128/576 (22%), Positives = 232/576 (40%), Gaps = 89/576 (15%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVSDDLVNDGGIFDLAIREARVFKFGSGSGTNYSNLRSGGEKLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN------------- 468
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 238 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASLVAGSR 296

Query: 469 ---------------TGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    ++       +  +P  ++ RV      G+T    +
Sbjct: 297 ICSRFLQAIVEEALANGADRKANPQLHRLIQNALSRAVPMSYIVRVLALVEQGYTTLDFE 356

Query: 506 EV-----SDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVALWR 547
           E      S+ +   G            EF  A EN +  +  +R   K  R + A  LW 
Sbjct: 357 EYTSNYESEAYQTVGGQNSNNTVRMTNEFMKAVENDDVWSLRERTTGKTARVVKARDLWE 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+L   ++   P + F    N        G +++SN C+E       ++TA CNL S+NL
Sbjct: 417 KILLSSWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMF---LDDTA-CNLASLNL 472

Query: 608 LAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           + HF   A+ +    +L         VL+  + +      +  + ++  R +GLG     
Sbjct: 473 I-HFIDEASGRMKVKELQHASALWAVVLEISVLMAHFPSREIARLSYEFRTLGLGFANLG 531

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----------- 713
           + L +L IPY SP A+ +A      ++  A   S E+A + GA+S ++            
Sbjct: 532 TVLMVLGIPYDSPRALALAGAISAVMTGQAYVTSAEMAHDLGAFSGYEANREEMLRVIRN 591

Query: 714 --------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                   S  +     +   G+ +E           ++ WD   ++    G RN+    
Sbjct: 592 HRRAARNMSEEEYEGLSVKPRGIDSEYCPGELFEAAGKV-WDLALEKGMQYGFRNAQVSV 650

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI  +    +  I+P +  +  K    G +  + +  V++  +R  +  A I D+
Sbjct: 651 IAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTPAQIDDI 710

Query: 825 KYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIES 859
           +++    G +   P  + + + +  F  D + ++ES
Sbjct: 711 EHYCKGHGTLSGSPSLNRQWLKSRGFPDDKIEIVES 746


>gi|213581375|ref|ZP_03363201.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 305

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 49/321 (15%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E A+C L + NL A         D+L      AVR LD ++D   + I  AK+     R 
Sbjct: 2   EIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRT 56

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + 
Sbjct: 57  LGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETT 116

Query: 716 WDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           + +G+ PID+       +D +  +N      W++L++ +KT G+RNS   A+ P+ T + 
Sbjct: 117 YAKGILPIDTYK-----KDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQ 171

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   +  I+P    + +K++  G   ++   + +    +D ++  ++ ++  +DG     
Sbjct: 172 ISNATNGIEPPRGYVSIKASKDG---ILRQVVPDYEHLKDAYE--LLWEMPNNDG----- 221

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDF 887
                                 ++     QK+IDQ+ S N   D    PSGK    +L  
Sbjct: 222 ---------------------YLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK 260

Query: 888 IYRQAWLMGLKTTYYLRSRSA 908
               A+  G+KT YY  +R  
Sbjct: 261 DLLTAYKFGVKTLYYQNTRDG 281


>gi|187736452|ref|YP_001878564.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426504|gb|ACD05783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1180

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 162/403 (40%), Gaps = 59/403 (14%)

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +  S   +PQ S+CFLT V D +  I   L     +     G+G + + +R     I G 
Sbjct: 195 MVQSTYEYPQCSACFLTEVGDSMEDILDHLTTEGRIFASGSGVGINLSTLRSSKEPISG- 253

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-- 474
            G+S G I F +  +  A A+  GGK R+ A    + + H D+ EF++ +    D  +  
Sbjct: 254 KGRSSGPISFDRGWDRMAGAIKSGGKTRRAARMVLMFSDHPDIFEFINTKNRQEDIAKVI 313

Query: 475 -RTHDMNTANWIPDLFMKRVTQN------------AGWTLFSPDEVSDLHD------LYG 515
            R H+++         +K++ +             A   L  P    +  D      LYG
Sbjct: 314 LREHNVHVE-------LKQIAETKLVAGTPAEKAAARVILSLPLATRNSFDPHMDALLYG 366

Query: 516 KEFEIAYEN---------YERQADRGEI---------KVFRKISAVALWRKMLTMLFETG 557
           +       N         ++  A+ G            + +   A  L   M   +++ G
Sbjct: 367 ETLSHQNANHSVSLKGDFWQALANNGNTYTRWVTNPAHIEQTFRAQELLEAMAQSIWDNG 426

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ- 615
            P +   D  N+ +P + +G + +SN C+E + LN++S     CNL S N        + 
Sbjct: 427 EPGVHNNDVINLWNPVKSIGTITTSNPCSEYVFLNNTS-----CNLSSFNAYRFLIKGED 481

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD D L    R A+   D  ++     IE+  +  + +R  G+G      +L  L 
Sbjct: 482 GKPVFDADALTHAARLAMVCADLNVERGGFPIEEIAEGTYKYRTTGIGFANVGGSLMALG 541

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +PY S E   IA +    ++    +AS E+  E G+Y  +  S
Sbjct: 542 VPYDSDEGRWIASQLCSALTAACWTASAEMGAELGSYVEYPAS 584


>gi|7532415|emb|CAB86983.1| aerobic ribonucleotide reductase class Ia [Acinetobacter
           calcoaceticus]
          Length = 209

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH++
Sbjct: 28  GIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLE 87

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---G 515
           VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L+D +    
Sbjct: 88  VESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQ 147

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D CN  SP
Sbjct: 148 DEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSP 200


>gi|229138138|ref|ZP_04266736.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|228645483|gb|EEL01717.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
          Length = 246

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 5/187 (2%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLDLRK 467
           EFLD +K
Sbjct: 240 EFLDTKK 246


>gi|7258400|emb|CAB77447.1| aerobic ribonucleotide reductase [Pectobacterium carotovorum]
          Length = 209

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH++
Sbjct: 28  GIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLE 87

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---G 515
           VE  L L+ N G +  R   ++    +  L  +R+ +    TLFSP +V  L+D +    
Sbjct: 88  VESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEEITLFSPSDVPGLYDAFFANQ 147

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            EFE  Y  YE+     +    ++I AV L+  M+     TG  +I   D CN  SP
Sbjct: 148 DEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQERASTGRIYIQNVDHCNTHSP 200


>gi|218529231|ref|YP_002420047.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium chloromethanicum CM4]
 gi|218521534|gb|ACK82119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium chloromethanicum CM4]
          Length = 1243

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 139/605 (22%), Positives = 234/605 (38%), Gaps = 97/605 (16%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C   T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +RG    + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKN---------TGDDRRRTH---------------------DMNTA------ 482
           VE F+D +           TG      H                     + N A      
Sbjct: 290 VENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIK 349

Query: 483 ----NWIPDLFMKRVTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEI 520
                 +PD ++KRV Q A  G+T     ++  D  S+ +  + G+          EF  
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLR 409

Query: 521 AYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           A E         R   KV +   A  LW K+    + +  P + F    N        G 
Sbjct: 410 AVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGR 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           + +SN C+E       ++TA CNL S NLL  +   +  FD +      R    VL+  +
Sbjct: 470 IRASNPCSEYMF---LDDTA-CNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISV 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A +
Sbjct: 526 MMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYA 585

Query: 697 ASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAM 738
            S E+A E G + ++                   G +       +  + L      +  +
Sbjct: 586 TSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADI 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 646 GAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 705

Query: 798 D-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMW 855
             F ++N    + L+    + EA I++++ +    G++ + P  +   + A  F  D + 
Sbjct: 706 GYFKIINQAAPDALRALG-YREAEIAEIEAYAVGHGSMGQAPAINPGSLRAKGFTDDKIA 764

Query: 856 LIESA 860
            +E+ 
Sbjct: 765 AVEAG 769


>gi|172065487|ref|YP_001816199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
 gi|171997729|gb|ACB68646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
          Length = 598

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 143/614 (23%), Positives = 239/614 (38%), Gaps = 94/614 (15%)

Query: 319 AFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT 374
           A F RVA  L+L E    +  VE   F NL      + +   L N+G      + +CF+ 
Sbjct: 25  AVFHRVAHALSLAEPADFRAQVERAFFLNLQRGA--IGAGRILANAGADTGGTMVNCFVH 82

Query: 375 TVPDDLYGIFGALQENAMLAK-------------YSGGLGNDWTPVRGLGAHIHGTNGKS 421
            +P     I   +   A+ A                GG+G D++P     A+    + +S
Sbjct: 83  PLP-----IPAGMPVQAVDAALAHALDDARLTLLMGGGIGYDFSPAPPADAYERRFSSES 137

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G    +   +    A+   G R+GA    L   H D+  F++ ++     R R    N 
Sbjct: 138 -GACAAIDRFDAMCGALPFAGPRRGAQMGVLRCDHPDLVAFVNAKRG----RSRWPTFNL 192

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM+ V  +  W L      +  H   G         Y          ++  + 
Sbjct: 193 SVGITDAFMEAVAHDLPWALV---HQTQRHGASGAPARRPDGRY----------LYATVP 239

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW +++    ++  P + F D     +P +    + ++N C E  L         C 
Sbjct: 240 ARTLWHEIVNAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQPLPPYGS----CV 295

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG I+L + F  +         FD+  LA  +R  VR+LDNV+D+    +   +      
Sbjct: 296 LGPIDL-SRFVRHPFGVDGKPHFDFATLADAVRVQVRLLDNVLDLTAWPLAAHEHEARRT 354

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G    L +L + Y S EA   A   +  +  HA +AS  LA ERGA+ ++  
Sbjct: 355 RRIGVGVTGLGDTLTMLQLRYDSVEARAFARGIVLTMREHAFAASAALAAERGAFPAYDP 414

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           + +  G  P   + L  +V   +A +                 G+RNS+ ++ AP  +++
Sbjct: 415 AAYLAG--PAYRMLLPLKVHRAIAQH-----------------GLRNSHLLSFAPAGSVS 455

Query: 774 -NIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              C   S  I+P+      +   + D   V  F V     R      +  +L       
Sbjct: 456 LAFCDNCSNGIEPALGWTQHRVVRTAD-GRVRRFRVENHACR------LFRELH------ 502

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           G+  ++PD       TA +I P   +   +  Q  +D   S  + +  + S   +D ++ 
Sbjct: 503 GDSVQLPD----YFVTAADIAPADHVAMLAALQPCVDAGISKTVTIPGQCSLADVDALFF 558

Query: 891 QAWLMGLKTTYYLR 904
           QAW  GLK     R
Sbjct: 559 QAWRDGLKGITVFR 572


>gi|167840936|ref|ZP_02467620.1| hypothetical protein Bpse38_29954 [Burkholderia thailandensis
           MSMB43]
          Length = 613

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 133/333 (39%), Gaps = 30/333 (9%)

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           AL E  +       LG D++ +   GA        S GV   L   +       +   R 
Sbjct: 123 ALDEARLALAMGADLGYDFSDIPPAGARPDADQPTSPGVRAALDRFDRIGAQAGERDGRH 182

Query: 446 GAVCAYLETWHIDVEEFLDLR--KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
            A  A L   H D+  F   +  +  G   R T ++  A  + D FM+ V Q+  WTL  
Sbjct: 183 RAQLAVLRCDHPDLSAFATAKCGRERGHAHRTTLELAVA--VTDAFMQAVEQDLPWTLRH 240

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P    D         + A+              +  + A  LWR+++    +   P + F
Sbjct: 241 PAPPRDAASGALPAADGAW-------------TYASVPARNLWREIVAAARDGAGPGLVF 287

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------Q 615
            D  +   P +    + +++ C    L           LG+++L + F  N        +
Sbjct: 288 VDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM----LGAVDL-SRFVRNPFGAGGEPR 342

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+    + +R  VR+LDN +DI    +    + ++  R IG+G+ G    L ++ + Y 
Sbjct: 343 FDFAAFDAAVRVEVRLLDNALDIARWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYD 402

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SP A E+A      +   A SAS ELA ERGAY
Sbjct: 403 SPAAREMARYIASDLRNLAYSASAELAAERGAY 435


>gi|323137682|ref|ZP_08072758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
 gi|322396979|gb|EFX99504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
          Length = 1212

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 131/588 (22%), Positives = 228/588 (38%), Gaps = 95/588 (16%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGEKEKLSGG 248

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
              S  ++ FLK+ +  A A+  GG  R+ A    ++  H D+E F+D +          
Sbjct: 249 GSSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFVDWKVKEEEKVASL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                   GDD          +R   +   N +PD F+KRV Q 
Sbjct: 308 VTGSKIVKKHLKAILRACVNCDGPGDDCFNPEKNPALKREIKLARRNEVPDNFIKRVIQF 367

Query: 497 A-------GWTLFSPDEVSDLH-DLYGK----------EFEIAYENYE--RQADRGEIKV 536
           A        +  +  D  S+ +  + G+          EF  A EN        R + KV
Sbjct: 368 ARQGYKDISFETYDTDWDSEAYLTVSGQNSNNSVRVTDEFLHAVENDGDWNLIKRLDGKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P I F    N        G + +SN C+E       ++
Sbjct: 428 SKTLKARDLWEKIGYAAWASADPGIQFHTTINDWHTCPAGGPIRASNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           TA CNL S+NLL  F +++    D D     +R    VL+  + +     ++  + ++ +
Sbjct: 485 TA-CNLASLNLL-QFRDDETKRIDVDSYEHAVRLWTIVLEISVLMAQFPSKEIAQLSYDY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF-- 711
           R +GLG       L    + Y S     I       ++    + S E+A+ERG ++ F  
Sbjct: 543 RTLGLGYANVGGLLMSSGVAYDSAAGRAITGALSAIMTGVCYATSAEMAKERGPFARFME 602

Query: 712 ----------------KGSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVK 754
                            G         +  + L +A   D L   R +   WD+   + +
Sbjct: 603 NRESMLRVVRNHRRAAHGEHDGYESLAVKPVPLDIASCPDPLLAERAA-AAWDKALSQGE 661

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V E  + 
Sbjct: 662 LYGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYLKIVNRAVPEGLRA 721

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             + E+ I++++ +     ++   P  +   + A  F  + +  +E+A
Sbjct: 722 LSYRESEIAEIEAYAVGHASLANAPAINTASLRARGFTDEKLAAVEAA 769


>gi|163850534|ref|YP_001638577.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium extorquens PA1]
 gi|163662139|gb|ABY29506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium extorquens PA1]
          Length = 1243

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 138/605 (22%), Positives = 235/605 (38%), Gaps = 97/605 (16%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C   T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +RG    + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKN---------TGDDRRRTH---------------------DMNTA------ 482
           VE F+D +           TG      H                     + N A      
Sbjct: 290 VENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIK 349

Query: 483 ----NWIPDLFMKRVTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEI 520
                 +PD ++KRV Q A  G+T     ++  D  S+ +  + G+          EF  
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLR 409

Query: 521 AYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           A E         R   KV +   A  LW K+    + +  P + F    N        G 
Sbjct: 410 AVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGR 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           + +SN C+E       ++TA CNL S NLL  +   +  FD +      R    VL+  +
Sbjct: 470 IRASNPCSEYMF---LDDTA-CNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISV 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A +
Sbjct: 526 MMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYA 585

Query: 697 ASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAM 738
            S E+A E G + ++                   G +       +  + L      +  +
Sbjct: 586 TSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADI 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 646 GAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 705

Query: 798 D-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMW 855
             F ++N  + + L+    + E+ I++++ +    G++ + P  +   + A  F  D + 
Sbjct: 706 GYFKIINRAVPDALRALG-YRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIA 764

Query: 856 LIESA 860
            +E+ 
Sbjct: 765 AVEAG 769


>gi|90417656|ref|ZP_01225568.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337328|gb|EAS50979.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1294

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 126/575 (21%), Positives = 226/575 (39%), Gaps = 100/575 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  
Sbjct: 187 TRSTSSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGSNFSYLRGEGET 246

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLE----------TWHIDVEE- 461
           + G  GKS G++ FLK+ +  A A+   G  R+ A    ++          +W +  EE 
Sbjct: 247 LAG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYISWKVREEEK 305

Query: 462 ---------------------FLDLRKNTGDD---------RRRTHDMNTANWIPDLFMK 491
                                 ++     GD          +R   D   A  +P+ ++K
Sbjct: 306 VAALVTGSKTVSKHLKAILSACVNCEGPDGDCFEPMKNPALKRAVKDAKRAQ-VPENYVK 364

Query: 492 RVTQNA--GWT-----LFSPDEVSDLH-DLYGKEFEIAY---ENYERQAD---------R 531
           RV Q A  G+T     ++  D  S+ +  + G+    +    +++ R  +         R
Sbjct: 365 RVIQFARQGYTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVEEDGTWDLIRR 424

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            + KV + + A  LW ++    + +  P + +    N        G + +SN C+E    
Sbjct: 425 TDGKVAKTLKARELWDQIGYAAWASADPGLHYNTTMNDWHTCPAAGPIRASNPCSEYMF- 483

Query: 592 SSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
              ++TA CNL S+NL+              +FD D      R    VL+  + +     
Sbjct: 484 --LDDTA-CNLASLNLIQFREEGLDGPEGIKRFDTDAFEHATRLWTVVLEISVMMAQFPS 540

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++  + ++ +R +GLG       L    IPY S E   I       ++  A   S E+A 
Sbjct: 541 KEIARLSYDYRTLGLGFANIGGLLMTAGIPYDSDEGRAICGAIAALMTGVAYKTSAEMAG 600

Query: 704 ERGAYSSFKGS-------LWDQG-----------VFPIDSIGLLAEVRDELAMNRTSRLP 745
             GA+  ++ +       + + G              +D + L      +  ++  ++  
Sbjct: 601 HLGAFPDYERNSEHMLRVMRNHGRAAHGIANGYEGLSVDPVPLDHASLPDKRLSARAKTA 660

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           W +  +  K  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 661 WTDAVELGKKNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 720

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
                 L+    + EA I++++ +    GN+ + P
Sbjct: 721 RAAPEALRSLG-YTEAQIAEMEAYAVGHGNLNQAP 754


>gi|240137599|ref|YP_002962070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
 gi|240007567|gb|ACS38793.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
          Length = 1243

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 138/605 (22%), Positives = 235/605 (38%), Gaps = 97/605 (16%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C   T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +RG    + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKN---------TGDDRRRTH---------------------DMNTA------ 482
           VE F+D +           TG      H                     + N A      
Sbjct: 290 VENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIK 349

Query: 483 ----NWIPDLFMKRVTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEI 520
                 +PD ++KRV Q A  G+T     ++  D  S+ +  + G+          EF  
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLR 409

Query: 521 AYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           A E         R   KV +   A  LW K+    + +  P + F    N        G 
Sbjct: 410 AVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGR 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           + +SN C+E       ++TA CNL S NLL  +   +  FD +      R    VL+  +
Sbjct: 470 IRASNPCSEYMF---LDDTA-CNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISV 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A +
Sbjct: 526 MMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYA 585

Query: 697 ASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAM 738
            S E+A E G + ++                   G +       +  + L      +  +
Sbjct: 586 TSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADI 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 646 GAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 705

Query: 798 D-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMW 855
             F ++N  + + L+    + E+ I++++ +    G++ + P  +   + A  F  D + 
Sbjct: 706 GYFKIINRAVPDALRALG-YRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIA 764

Query: 856 LIESA 860
            +E+ 
Sbjct: 765 AVEAG 769


>gi|220935836|ref|YP_002514735.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997146|gb|ACL73748.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1137

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 149/335 (44%), Gaps = 42/335 (12%)

Query: 598  AVCNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGS++L   F  +      +FD+D     +    R+LDNV++I+   + +  ++  
Sbjct: 710  GACLLGSVDL-TRFVQHPFTGKLRFDWDTYREVVAVFTRMLDNVVEIHGLPLAQQAEALE 768

Query: 652  THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA---- 707
              R  G+G +G  SAL ++ I Y SPEA    + +   ++       +ELA+E+G     
Sbjct: 769  RTRRHGMGFLGLGSALAMMGIRYDSPEAAAFTERAARELALTGWRTGLELAREKGPAPLM 828

Query: 708  YSSFK---------GSLWDQGVFPIDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
            Y  F           +L + G+   D + G +   R    M R + L    L   +   G
Sbjct: 829  YERFTVTEHLLARYPALAEDGIRVGDVLPGRVLHARYSPYMRRIAGLD-PALVAALAEEG 887

Query: 758  MRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE---LKQ 812
             R ++  AIAPT TIA   G  VS  I+PS+ + Y+++ +  D    ++  V     L  
Sbjct: 888  ARFTHHSAIAPTGTIALSFGNNVSNGIEPSFAHTYLRNILGRDGATRDTVPVTAYELLAW 947

Query: 813  RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA-- 870
            R L D     + K          + P  L +   TA +I P   +   +  Q WID A  
Sbjct: 948  RALVDPDADPEAK----------QGPHRLPEAFVTAGDIAPRAHLAIQAAAQPWIDAAIS 997

Query: 871  QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYL 903
            +++N+  D P     D +YR+A  +GLK  TTY L
Sbjct: 998  KTINVPTDCPFEDFRD-LYREAHALGLKGCTTYRL 1031



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 27/247 (10%)

Query: 358 LFNSGTR-HPQLSS---CFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           L N+G R H + +S   C ++ T+ D L  I G L+E  +  +   G+G +++ +R  GA
Sbjct: 85  LANAGARDHKRGTSTINCTVSGTIHDTLDEILGKLREAGLTLQSGAGIGYEFSTLRPKGA 144

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            + G   +S G + F+ V +     +   G R+GA  A     H DV EF++ ++  G  
Sbjct: 145 WVAGAGARSSGPLSFMDVYDQMCRTIASAGDRRGAQMATFHIGHPDVLEFIEAKREPG-- 202

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTL---FSPDEV----SDLHDLYGKEFEIAYENY 525
             R    N +  +PD FM  +   A W L    SP E     +DL D      ++ + ++
Sbjct: 203 --RLRQFNLSLLVPDAFMAALDAGADWPLAFPLSPAEQARTGADLQD----PKQVVWRHW 256

Query: 526 ERQA-------DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                       R   +V + I A ALW +++   ++   P + F D  N  +       
Sbjct: 257 PETEGYITDGHGRVACRVQQWIPAAALWEQVMRATYDHAEPGVIFIDRVNAENNNGFCES 316

Query: 579 VHSSNLC 585
           + ++N C
Sbjct: 317 IRAANPC 323


>gi|254560071|ref|YP_003067166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
 gi|254267349|emb|CAX23181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
          Length = 1243

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 138/605 (22%), Positives = 235/605 (38%), Gaps = 97/605 (16%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C   T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +RG    + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKN---------TGDDRRRTH---------------------DMNTA------ 482
           VE F+D +           TG      H                     + N A      
Sbjct: 290 VENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIK 349

Query: 483 ----NWIPDLFMKRVTQNA--GWT-----LFSPDEVSDLH-DLYGK----------EFEI 520
                 +PD ++KRV Q A  G+T     ++  D  S+ +  + G+          EF  
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLR 409

Query: 521 AYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           A E         R   KV +   A  LW K+    + +  P + F    N        G 
Sbjct: 410 AVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGR 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVI 636
           + +SN C+E       ++TA CNL S NLL  +   +  FD +      R    VL+  +
Sbjct: 470 IRASNPCSEYMF---LDDTA-CNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISV 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A +
Sbjct: 526 MMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYA 585

Query: 697 ASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAM 738
            S E+A E G + ++                   G +       +  + L      +  +
Sbjct: 586 TSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADI 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 646 GVHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 705

Query: 798 D-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMW 855
             F ++N  + + L+    + E+ I++++ +    G++ + P  +   + A  F  D + 
Sbjct: 706 GYFKIINRAVPDALRALG-YRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIA 764

Query: 856 LIESA 860
            +E+ 
Sbjct: 765 AVEAG 769


>gi|294084614|ref|YP_003551372.1| ribonucleoside-diphosphate reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664187|gb|ADE39288.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1215

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 116/541 (21%), Positives = 207/541 (38%), Gaps = 97/541 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G ++ G 
Sbjct: 189 SAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGSGENLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FL++ +  A A+  GG  R+ A    ++  H D+EE++D +          
Sbjct: 248 GGKSSGLMSFLRIGDRAAGAIKSGGTTRRAAKMVTVDIDHPDIEEYVDWKVVEEQKVAAL 307

Query: 467 --------KNTG-------------DDRRRTHDMNTA----------NWIPDLFMKRVTQ 495
                   K+ G             DD R    +N            + IP+ +++RV Q
Sbjct: 308 VAGSKLAQKHMGEVMAACQITDGLDDDERFDPKVNKVLRKAIISARKSMIPENYVQRVIQ 367

Query: 496 NAG-------WTLFSPDEVSDLHDLYGKE-----FEIAYENYERQADRGEIKVFRK---- 539
            A        +  +  D  SD +     +       ++ +  +   D G+  + ++    
Sbjct: 368 FAQQGYNEIEFKTYDTDWDSDAYLTVAGQNSNNSVRVSNDYLQAVLDGGDWNLIKRRDDG 427

Query: 540 ----ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
               I A  LW K+    +    P + +    N        G +++SN C+E       +
Sbjct: 428 VAKTIKAKDLWEKIAHAAWACADPGLQYDTTINEWHTCPEGGRINASNPCSEYMF---LD 484

Query: 596 ETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL S+NL+     +  FD +      R     L+  + +     ++  + ++ +R
Sbjct: 485 DTA-CNLASLNLMQFRKQDGTFDIEMFEHGCRFWTLTLEISVLMAQFPSKEIAQLSYEYR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L      Y S E   I       ++  + + S E+A E G +  +K  
Sbjct: 544 TLGLGFANIGGLLMAQGHSYDSDEGRAICGAISAIMTGTSYATSAEIAGEVGPFPQYKKN 603

Query: 713 -------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                                     + P+    L A+   +  +   ++  WD+     
Sbjct: 604 AKHMLRVMKNHRLAAHSKASGYKGLSILPVP---LDAKSCPDQDLVNAAKAAWDKAVDLG 660

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
              G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L 
Sbjct: 661 TKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYFKIINRVVPEALD 720

Query: 812 Q 812
           +
Sbjct: 721 K 721


>gi|326315454|ref|YP_004233126.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372290|gb|ADX44559.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1226

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 57/330 (17%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVI 636
           C E  L S       C+LG I +L  F  +         FD++  A+++ T VR LDNV+
Sbjct: 690 CGEQPLPS----YGCCDLGPI-ILPRFVRHPFGFAGEPAFDFEAFAASVATQVRALDNVL 744

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +  +   R IG+G  G  + L +L + Y +     +A    E +   A +
Sbjct: 745 DVTFWPLPQQRAESAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAECMRDAAYA 804

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+E+G +  F            D+ G L+           SRLP   L++ ++T 
Sbjct: 805 ASVELAKEKGVFPKF------------DAAGYLSP------GTFASRLP-AALQEAIRTH 845

Query: 757 GMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T+  A     S  I+P +   Y +     D +  + + V +     
Sbjct: 846 GIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-TSEYAVED----H 900

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QS 872
            W        + +    G+++ +PD       +A ++     I      Q +ID A  ++
Sbjct: 901 AW--------RLYRALGGDVDALPD----YFVSALQMPAAGHIAMMEAVQPFIDTAISKT 948

Query: 873 LNLYLDEPSGKKLDFIYRQAW---LMGLKT 899
           +N+ +D P  +    +Y  AW   L GL T
Sbjct: 949 VNVPVDYPY-EDFKNLYLHAWRARLKGLAT 977



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 35/284 (12%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVE---FYNL----LSSFHFMCSTPTLFNSGTRHPQLSS 370
           +  + RVA  LA  E  + + A+E     NL    + +   M +  T   +      L +
Sbjct: 40  ETLYRRVARALASVEAPEVREAIEARFLANLRAGAIGAGRIMSAAGTDIQA-----TLIN 94

Query: 371 CFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           CF+  V D + G        I+ AL+E A   +  GG+G D++ +R  GA + GT   + 
Sbjct: 95  CFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVKGTASMAS 154

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G   ++ V + +   V   G R+GA    L   H DV +F+  ++  G    R ++ N +
Sbjct: 155 GPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFITAKRTPG----RWNNFNVS 210

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             +PD F++ V  +A W L  P           +      E   RQ   G+  V+R + A
Sbjct: 211 VGVPDAFVQAVLDDAPWELVHP----------ARPGAALREEGARQRADGQW-VYRTLPA 259

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             LW  ++   ++   P I F D  N  +   +   + ++N C 
Sbjct: 260 RELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNPCV 303


>gi|315924390|ref|ZP_07920612.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622269|gb|EFV02228.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 984

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 198/489 (40%), Gaps = 58/489 (11%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I         L K   G+G +++P+RG    +  + GKS G
Sbjct: 174 QASACFILSIKDQLLGHRSISDHYVSETKLFKGGSGVGTNFSPLRGENEAL-SSGGKSSG 232

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++ FL+  +  A A+  GG  R+ A    ++  H ++E++++ +    +  R    M   
Sbjct: 233 MMSFLQGLDRNAGAIKSGGTTRRAAKMVIVDVDHPEIEDYINWKVKEEEKVRALGKMGYD 292

Query: 483 NWIP-DLFMKRVTQNAGWTLFSPDEVSD--LHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             +  + +     QNA  ++    E  D  +H     E  I          R + KV RK
Sbjct: 293 MGMDGEAYQTVAGQNANNSVRVDREFMDKVMHLDEDPEATITLTG------RKDHKVDRK 346

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCN-----IRSPQQHVGVVH----SSNLCTEITL 590
           I    LW ++    +    P + F +  N            VG  H    ++N C+E   
Sbjct: 347 IKVSKLWDEINEAAWACADPGLQFDNIFNNWHTCPAGEDGDVGAKHNRINATNPCSEYAF 406

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL SIN+   F     + D ++ +        VL+  I       E   +
Sbjct: 407 ---LDDTA-CNLASINIFRFFDPKTKKIDIERFSHLAGLIQLVLEASIYWGQFPTEDVAE 462

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R  GLG+    S +  L  PY S EA  +       ++ H+   S  +A + GA+
Sbjct: 463 KSYKFRTTGLGIANTASLILALGYPYDSDEARNLTAALAGLMTGHSYFVSALMASKVGAF 522

Query: 709 SSFK-----------------GSLWD--QGV----FPIDSIGLLAEVRDELAMNRTSRLP 745
             +K                 G+L D  +G+    + ID   L       L+M    +  
Sbjct: 523 ECYKINEPYMMRVMRNHARIAGTLTDAFEGLDYDPYIIDHPILKRMGFKNLSMR--IKDA 580

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNM-SGDFTVV 802
           W E     +  G RN+    IAPT TI  A  CG + SI+P Y ++  K  +  G   +V
Sbjct: 581 WQEALDYGEVYGYRNAQVSVIAPTGTISFAMDCGAT-SIEPFYSHVVFKKLVGGGSIEIV 639

Query: 803 NSFLVNELK 811
           N  +   LK
Sbjct: 640 NPVMEMALK 648


>gi|229108907|ref|ZP_04238511.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674563|gb|EEL29803.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
          Length = 243

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLD 464
           EFLD
Sbjct: 240 EFLD 243


>gi|49184284|ref|YP_027536.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Sterne]
 gi|49477194|ref|YP_035575.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318720|ref|ZP_00391679.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|254682486|ref|ZP_05146347.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726149|ref|ZP_05187931.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733902|ref|ZP_05191616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740408|ref|ZP_05198099.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753799|ref|ZP_05205834.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758894|ref|ZP_05210921.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49178211|gb|AAT53587.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. Sterne]
 gi|49328750|gb|AAT59396.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 255

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 251

Query: 461 EFLD 464
           EFLD
Sbjct: 252 EFLD 255


>gi|228957723|ref|ZP_04119467.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801966|gb|EEM48839.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 243

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVSK-ARQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLD 464
           EFLD
Sbjct: 240 EFLD 243


>gi|322434426|ref|YP_004216638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
 gi|321162153|gb|ADW67858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
          Length = 1149

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 139/614 (22%), Positives = 243/614 (39%), Gaps = 80/614 (13%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +RG    + G  G 
Sbjct: 179 TGYTKPQCSACFINSVQDSLDSILTLAKTEGMLFKWGSGAGSNLSSIRGSMETLSG-GGT 237

Query: 421 SQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           + G + F++  +  A  +  GGK R+ A    L   H D+ +F++ +     +  + + +
Sbjct: 238 ASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVVLNVDHPDIVDFIECKSK---EEAKAYSL 294

Query: 480 NTANW---IPD--LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
             A +    PD   +     QNA  ++     V+D       EF  A E     + R  +
Sbjct: 295 IAAGYDGSGPDSEAYSSIFFQNANNSV----RVTD-------EFMSAVERDAEFSTR-TV 342

Query: 535 KVFRKIS---AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           K    ++   A  +  K+    +  G P + +    N     ++   +++SN C+E    
Sbjct: 343 KERTPVTTGPARDIMNKIAENTWACGDPGMQYDTTINKWHTSKNTARINASNPCSEYMFL 402

Query: 592 SSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
             S     CNL S NL+    +  QFD     S I      ++ ++D   +  E   K++
Sbjct: 403 DDS----ACNLASFNLIKFVDSRGQFDIPAYRSAIAIVTTAMEIIVDSAGYPTEMIAKNS 458

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG---A 707
           H +R +GLG     + L    +PY S    + A      +   A   S  +A+      A
Sbjct: 459 HDYRPLGLGYANLGALLMSFGLPYDSDAGRDFAGTLTAILCGDAYYQSALIAETCPPLLA 518

Query: 708 YSSF--KGSLWDQGVFP---------IDSIGLLAEVRDELAMNRTSRLP----------- 745
            + F  + +    G  P         +D I +     +++  ++ S  P           
Sbjct: 519 ATPFCQQATPEQGGACPGFYMNREPFLDVIRMHRAEVNKIGKSKHSNEPFSVPQLDSLIQ 578

Query: 746 -----WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
                WD      +  G RNS    +APT TI  +    +  I+P    + Y K    G 
Sbjct: 579 ASKDAWDAALIHGEHYGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGM 638

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------- 850
             +VN+ + + L +    D  M + + Y D + G IE  P  +K  H   F+        
Sbjct: 639 IKIVNNTVPSALTKLGYSDADMHAIVSYIDAT-GTIEGAP-AIKAEHLAVFDCSFKPAKG 696

Query: 851 ---IDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR- 904
              I  M  I+  +  Q ++  A  +++NL  D  S + +   Y ++W  G+K     R 
Sbjct: 697 TRSIHYMGHIKMMAAAQPFLSGAISKTVNLPTD-CSVEDIAEAYLESWRQGIKAVAIYRD 755

Query: 905 -SRSATSVEKSTLK 917
            S+ A  +  ST K
Sbjct: 756 GSKGAQPLNVSTDK 769


>gi|165870353|ref|ZP_02215008.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167634338|ref|ZP_02392659.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|167639266|ref|ZP_02397538.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|170686841|ref|ZP_02878061.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|170706345|ref|ZP_02896806.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|177651553|ref|ZP_02934342.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190568126|ref|ZP_03021036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035396|ref|ZP_03102801.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218902558|ref|YP_002450392.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227815801|ref|YP_002815810.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228926481|ref|ZP_04089553.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932733|ref|ZP_04095605.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120990|ref|ZP_04250232.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229603385|ref|YP_002865864.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
 gi|164713848|gb|EDR19370.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167512705|gb|EDR88079.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|167530226|gb|EDR92952.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|170128879|gb|EDS97745.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|170669364|gb|EDT20107.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|172082831|gb|EDT67894.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190560860|gb|EDV14835.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992073|gb|EDX56036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218535235|gb|ACK87633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227003555|gb|ACP13298.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228662650|gb|EEL18248.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826938|gb|EEM72700.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833305|gb|EEM78870.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229267793|gb|ACQ49430.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
          Length = 243

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A +
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ 
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDII 239

Query: 461 EFLD 464
           EFLD
Sbjct: 240 EFLD 243


>gi|91977382|ref|YP_570041.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB5]
 gi|91683838|gb|ABE40140.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB5]
          Length = 1256

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 123/594 (20%), Positives = 225/594 (37%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR---------- 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVSAL 307

Query: 467 ---------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQN 496
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 308 VTGSKLNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQY 367

Query: 497 A-------GWTLFSPDEVSD---------------LHDLYGKEFEIAYENYERQADRGEI 534
           A        + ++  D  S+               L D + +  E   +       R   
Sbjct: 368 AKQGYKEIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET--DGDWNLTGRTTK 425

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E       
Sbjct: 426 KVMKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S NLL  +    N FD        R    VL+  + +     ++  + ++ 
Sbjct: 483 DDTA-CNLASANLLTFYDTTANVFDLGAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYE 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  + + S E+A + G +  +K
Sbjct: 542 FRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGVSYATSAEMAAKLGPFPGYK 601

Query: 713 GS-----------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            +                              P+D  G    + + +   + +   WD  
Sbjct: 602 KNAAHMLRVIRNHRRAAHGESRGYEALSVAPVPLDHAG--CPIPEAITHAKAA---WDRA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF-TVVNSFLV 807
            +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  ++N  + 
Sbjct: 657 LELGELHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             L+    + E  I++++ +    G++   P  +   + A  F  + +  +E+A
Sbjct: 717 AALRILG-YPENQIAEIEAYAVGHGSLSNAPAINHSTLKAKGFTDEALAKVEAA 769


>gi|1617015|emb|CAA69026.1| ribonucleotide reductase RNR1 like protein [Arabidopsis thaliana]
          Length = 236

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 27/191 (14%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W  L+  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 13  SDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRXVLSGEFV 72

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIES 859
           VVN  L+++L    LW   + + L   +GSI   + R PDDLK I+ T +EI        
Sbjct: 73  VVNKHLLHDLTDMGLWTPTLKNKLINENGSIVTCLLRYPDDLKAIYRTVWEI-------- 124

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLD--------------FIYRQAWLMGLKTTYYLRS 905
            + RQ W++ A      +D+  G KL               + +++ W  G+   YYLRS
Sbjct: 125 ITXRQ-WVNWAADCGCNIDQSQGLKLTTWTNPTSQNSFVHFYTWKRVWKTGM---YYLRS 180

Query: 906 RSATSVEKSTL 916
           R+A    K T+
Sbjct: 181 RAAADAIKFTV 191


>gi|145641094|ref|ZP_01796675.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274255|gb|EDK14120.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 245

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 10/216 (4%)

Query: 289 RDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKR---AVEFY 343
           RD  F Y  ++ L  +Y +   + G   E  Q  ++ V+  L   +  KE R      FY
Sbjct: 28  RDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYLLVSASL-FSKYPKETRLDYVKRFY 86

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           +  S+F     TP +  +G R P  Q SSC L    D L  I               G+G
Sbjct: 87  DATSTFKISLPTPIM--AGVRTPTRQFSSCVLIECDDSLDSINATASAIVKYVSQRAGIG 144

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +   +R LG+ I G      G IPF K       + +QGG R GA   Y   WH++ E 
Sbjct: 145 INAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQGGVRGGAATLYYPIWHLEAEN 204

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            L L+ N G +  R   M+    +  L  +R+ + +
Sbjct: 205 LLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGS 240


>gi|15894334|ref|NP_347683.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023960|gb|AAK79023.1|AE007620_4 Ribonucleotide reductase, vitamin B12-dependent [Clostridium
           acetobutylicum ATCC 824]
 gi|325508462|gb|ADZ20098.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 987

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 214/544 (39%), Gaps = 76/544 (13%)

Query: 367 QLSSCFLTTVPDDLYGIFGALQE---NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G     ++      L K   G G +++ +R  G  + G  G S G
Sbjct: 175 QASACFIISIEDKLLGSHSISEQYVTETKLFKGGSGTGTNFSTIRAKGEKLSG-GGISSG 233

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN-T 481
           ++ FLK  +  A A+  GG  R+ A    L   H ++ +++  +    D  +    M   
Sbjct: 234 LMSFLKGLDRNAGAIKSGGTTRRAAKMLCLNVDHPEIMDYITWKAKEEDKVKALGKMGYD 293

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDE----VSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           A++  + +     QNA  ++   DE    V +L +   +  E+     + + D    KV 
Sbjct: 294 ASFEGEAYETVSGQNANNSVMLSDEFMKKVCNLKNNPDETIEL-----KGRVDSSVNKV- 347

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-------VVHSSNLCTEI 588
            KIS   LW       +    P   F D  N     P    G        ++S+N C E 
Sbjct: 348 EKISN--LWEAFNKSSWRCADPSPLFSDTLNAWHTCPGGEDGNFNADYNKINSTNPCGEY 405

Query: 589 T-LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L+ +S     CNL SINL   +   N  FD +     I     +L+  I       E 
Sbjct: 406 AFLDDTS-----CNLASINLYKFYDTENKTFDLEGYKHVIGLVQLLLEASIHWGQFPTED 460

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +  H  R  GLG+    + L ++  PY S E   I+   +  ++ ++   S  +A+E 
Sbjct: 461 VARKTHMFRTTGLGISNLAALLMVMGYPYDSEEGRAISSSLIGVLTGYSYYISSLMAKEV 520

Query: 706 GAYSSF-----------KGSLWDQGVF--PIDSIGL--------LAEVRDELAMNRTSRL 744
           GA+  +           + S    G    P + IG         + E  D   ++   + 
Sbjct: 521 GAFEKYNINKEHMLKVLRNSARAAGSIDTPFEKIGYKPLVVNHSILEKEDLRYISSELKN 580

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            W+   +  +  G RN+    +APT TI  A  C  S S++P + ++  K    G +  +
Sbjct: 581 SWNSALESGEKYGFRNAQVSVMAPTGTISFAMDC-ASTSVEPFFSHVIYKKLSGGGYMTL 639

Query: 803 NSFLVNELKQRDLWDEAMISDL----------KYHDGS------IGNIERIPDDLKKIHA 846
            + L+ E  +   + E  I D+          K  DG+       G IE  P  LKK H 
Sbjct: 640 TNPLIQESLKHLGYSENEIEDITNYILRKKKVKTDDGTEYETILDGKIEGAP-HLKKEHL 698

Query: 847 TAFE 850
             F+
Sbjct: 699 AIFD 702


>gi|297622329|ref|YP_003703763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
 gi|297163509|gb|ADI13220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
          Length = 1236

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 153/376 (40%), Gaps = 71/376 (18%)

Query: 574  QHVGVVHSSNL----CTEITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIR 626
            +HV    ++ L    C EI L         C+LG+INL A+        F +D     +R
Sbjct: 738  EHVHAFDANGLLAHNCGEIPLFPGEP----CDLGAINLAAYVTGEGLENFAWDAFREDVR 793

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            T VR LDNV+++N   +E  +  +   R +GLG+MG   AL  L   Y + E     +  
Sbjct: 794  TCVRFLDNVLEVNRFALEDNRAMSMKLRRLGLGIMGLADALIKLGYRYDTDEGRAAVEAI 853

Query: 687  MEFISFHAISASVELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            +  +   A  AS  LA+ERGA+  F K SL                        +T R  
Sbjct: 854  ITAMRESATEASRALAEERGAFPEFGKSSL------------------------KTPR-- 887

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                         RN   + +APT T + + GVS  ++P +   ++   +   +  + + 
Sbjct: 888  -------------RNVALLTVAPTGTTSMLMGVSSGVEPIFAP-FIYRKIGDTYAALIAP 933

Query: 806  LVNEL----------KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            L  E+          +    WD E ++  ++ + GS+  +  IP+ +K++   A +I P 
Sbjct: 934  LFKEMLEQHPPHPDYEHEGAWDWERVVEAVQANHGSVQGLAFIPEAVKRVLVCAHDIAPE 993

Query: 855  WLIESASRRQKWIDQ-----AQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSR 906
              ++     Q+  D      A S++  ++ P+   +  +   Y  A+ +G K     R  
Sbjct: 994  DHVKMQGAVQRAFDAGGEMVANSISKTINLPNKATVADVYSAYSMAFDVGCKGITVYRDG 1053

Query: 907  SATSVEKSTLKGVDGK 922
            S      ST KG   K
Sbjct: 1054 SRQFQVLSTSKGASEK 1069


>gi|258623341|ref|ZP_05718346.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
 gi|258584401|gb|EEW09145.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
          Length = 308

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RV M         E  A++    + S  F  +TPT  N+G +   +L SCFL  + D++ 
Sbjct: 137 RVVMTALTLARGDEAFAMQLMREILSGRFQPATPTFINAGKKSRGELISCFLLRIEDNME 196

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 197 SIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMKLLEDSFSYANQL 256

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 257 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDI 303


>gi|119357579|ref|YP_912223.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354928|gb|ABL65799.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 1148

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 137/581 (23%), Positives = 228/581 (39%), Gaps = 105/581 (18%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVKDDLVNDGGIFDLAVREARVFKFGSGSGTNYSSLRSGGEQLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN------------- 468
            ++ FLK+ +  A A+  GG  R+ A    ++  H DV+ F+D +               
Sbjct: 238 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVDRFIDWKAKEEDKVASLVAGSR 296

Query: 469 ---------------TGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    +           +P  ++ RV    + G+T    D
Sbjct: 297 ICSRFLQAIVNEAVENGSDRKENPGLQQLIKNALGRAVPMSYIVRVLALVDQGYTTLDFD 356

Query: 506 EV-----SDLHDLYGKE-----------FEIAYENYE--RQADRGEIKVFRKISAVALWR 547
           E      S+ +   G +           F  A EN E     +R   K  + + A  LW 
Sbjct: 357 EYDSNYESEAYQTVGGQNSNNTVRVTNAFMKAVENDEIWLLKERTTGKTAKALKARDLWE 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+L   ++   P + F    N        G +++SN C+E       ++TA CNL S+NL
Sbjct: 417 KILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSEYMF---LDDTA-CNLASLNL 472

Query: 608 LAHFANNQFDYDKL-----ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           + HF +      K+     AS++ T   VL+  + +     +   + ++  R +GLG   
Sbjct: 473 I-HFVDEASGRIKIKELLHASSLWTV--VLEISVLMAHFPSKDIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
             + L +L IPY SP+A+ IA      ++  A   S E+A++ G ++ +  +  D  +  
Sbjct: 530 LGTVLMVLGIPYDSPKALAIAGAIGALMTGQAYVTSAEMARDLGTFAGYTANAKDM-LRV 588

Query: 723 IDSIGLLAEVRDELAMNRTSRLP-------------------WDELKKRVKTIGMRNSNC 763
           I +    A    E      S +P                   WD+  ++ +  G RN+  
Sbjct: 589 IRNHRRAAHNMSEEEYEGLSVMPRGIDSEYCPKDLFEAAGKVWDDALRKGEKHGFRNAQV 648

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
             IAPT TI  +    +  I+P +  +  K    G  F +VN  +   L++         
Sbjct: 649 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALER--------- 699

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             L Y    I +IER       + A    I+  WLI    R
Sbjct: 700 --LGYTISQIDDIERYCKGHGTL-AGCNAINRPWLIARGFR 737


>gi|111224293|ref|YP_715087.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111151825|emb|CAJ63545.1| Vitamin B12-dependent ribonucleotide reductase (partial) [Frankia
           alni ACN14a]
          Length = 711

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 130/596 (21%), Positives = 239/596 (40%), Gaps = 54/596 (9%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E   LL    F  ++P  FN GT  PQ ++SCF+    D L  +    ++ A+L +   G
Sbjct: 107 ELIWLLLHQAFSFNSPVWFNVGTDLPQQVASCFILAADDSLDSVLDWYRDEALLFRGGAG 166

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV-CAYLETWHID 458
            G + + +R   A +  +   + G +  ++ A+ +A ++  GG  + A     L+  H D
Sbjct: 167 SGVNLSRMRST-AELLPSGRPAPGPVSIMRGADASAGSIRTGGAPRPATKIVILDVDHPD 225

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514
           + +F++ +     + R+   ++ A +  D+  + +     QNA       +    + D +
Sbjct: 226 IADFIECKAR---EERKIRALHDAGFDMDVGGRDIDSVQFQNA-------NNAVRVSDAF 275

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            +    A ++ E +A RG+ +  R + A  ++R +    +E   P + F D  N      
Sbjct: 276 MRAVA-ADQSIELRA-RGDGQTVRTVPARKIFRMIAQAAWECADPGLHFDDTINSWHTCP 333

Query: 575 HVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVL 632
             G + +SN C+E + L++SS     C LGS+NLL     + +FD    A+ +   V  +
Sbjct: 334 ASGRISASNSCSEYMHLDNSS-----CTLGSLNLLRFLGRDRRFDATSFAAAVELVVLAM 388

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D  +        +   +  + R +G+G     + L      Y S E    A      +S 
Sbjct: 389 DISLCFAEVPSRQIGDATRSFRQLGVGHANLGALLMATGQAYDSEEGRATAAAITSLMSA 448

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT----------- 741
            A   S E+A   G Y  F  +               A +R   A  R+           
Sbjct: 449 TAYRRSAEIAAVLGPYPGFTANAAAHRRVVARHSAAHAAIRHPPAARRSMEKSIHEQVLP 508

Query: 742 -SRLPWDELKKRVKTIGMRNSNCMAIAPTAT--IANICGVSQSIDPSYQNLYVKSNMSGD 798
            + L W+      +  G RN++   IAPT T  +A  C  +  I+P    + V+ + +G 
Sbjct: 509 RAGLEWERALLLGERHGWRNAHLTLIAPTGTTGLAMDC-ATMGIEPDLALVKVRKSATGS 567

Query: 799 -FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------- 850
              +VN+ +   L     +  A ++ +     + G+    P  L+  H   F+       
Sbjct: 568 AMRLVNTTVPTALHALG-YPRAAVARIVSFIAAHGHAVDAP-GLRPEHQAVFDCALGPRA 625

Query: 851 IDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           IDPM  +   +  Q ++    ++++NL            +Y   W  GLK     R
Sbjct: 626 IDPMGHVRMMAAVQPFLSGGISKTVNLQASATVDDVAALLY-AGWRRGLKALAVYR 680


>gi|187926579|ref|YP_001892924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|241666090|ref|YP_002984449.1| ribonucleotide reductase-like protein [Ralstonia pickettii 12D]
 gi|187728333|gb|ACD29497.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|240868117|gb|ACS65777.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12D]
          Length = 605

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 206/522 (39%), Gaps = 75/522 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA----VEFYNLLSSFHF 351
           L   +L DRY      +  ++    F RVA  LA  E + ++RA    + + NLL     
Sbjct: 15  LSTAVLADRYLAPGETTCNDV----FKRVAHALAAAE-QPDQRAHFTRLFYANLLQGA-- 67

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPD------DLYGIFGALQENAMLAKYSGGLGNDW 404
           + +   + N+G+  H  + +CF+  +        D   +  AL       +  GG+G D+
Sbjct: 68  IGAGRIMANAGSANHGTMVNCFVHPIGASEQSVADASDVERALHAAQRTLQMGGGVGYDF 127

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +    A    +N  +  V   L   +           R GA  A L   H D+  F+ 
Sbjct: 128 SVIAPADAEQATSNSGTGSVCAVLDSFDRVCATQALVNTRGGAQMAVLRCDHPDLATFIT 187

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++     RRR    N +  + D FM+ V  +  W L                   A  N
Sbjct: 188 AKRG----RRRWATFNLSVAVTDAFMRAVADDGLWCLQ----------------HRAVPN 227

Query: 525 YERQADRGE-IKVFRKISAVALWRKMLTMLFETGH----PWITFKDPCNIRSPQQHVGVV 579
            +R A     +   +   AV   R++  M+ E  H    P + F D  N  +    +  +
Sbjct: 228 AQRLATGAHALSNGKWCYAVVPARQLWNMIAEAAHHSAEPGLLFIDTINAANDLAEIETI 287

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINL-------LAHFANNQFDYDKLASTIRTAVRVL 632
            ++N C E  L         C LG I++               FD+  L+  +R  VR+L
Sbjct: 288 AATNPCGEQPLPPWGS----CVLGPIDVSRWVQWPFGMGGQPLFDFVGLSRAVRVQVRML 343

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DN I+I    + +        R IG+G+ G   AL ++ +PY +P A   A +    +  
Sbjct: 344 DNAIEITRWPLPEHMHEAQAKRRIGVGVTGLADALTMMCLPYDAPAARCFAAQIGRCLRD 403

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS  LA ERG Y                   L +  R     + ++ LP   + + 
Sbjct: 404 SAYAASAALACERGPYP------------------LFSPERSLAPGHFSAALP-KAVCEA 444

Query: 753 VKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVK 792
           V   G+RNS+ +++APT +++   G   S  I+P++  +Y +
Sbjct: 445 VAKHGLRNSHLLSLAPTGSVSLAFGDNCSSGIEPAFDWVYQR 486


>gi|38639970|ref|NP_943925.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414659|gb|AAQ17702.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 323

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           V+     T + +     E ++C L + NL A        Y+   +  R AVR LDN++D 
Sbjct: 10  VYEDEEYTTVEIEVDVSEISLCTLAAYNLGAIEG-----YEDFLNVARAAVRALDNLLDY 64

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             + + +A  +    RA+G+G+  F   L    + Y+S  A ++   +ME + F  + AS
Sbjct: 65  QDYPVVQALAAKK-RRALGMGVTNFAYFLAKNFVNYSSGNANKLVHRTMEMMQFANLVAS 123

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           +ELA+ERGA      + W  G+ PID      +  D +  N   ++ W+ L+  +K  G+
Sbjct: 124 MELAKERGANEWHHKTKWADGLLPID---WYNKNVDNIVPNDL-KMDWEWLRAEIKQHGL 179

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           RN    A  P  + + I   +  I+P    +  K +  G F
Sbjct: 180 RNDTLSAFMPCESSSQITNSTNGIEPPRGLVSTKQSKDGVF 220


>gi|110668757|ref|YP_658568.1| ribonucleoside-diphosphate reductase alpha subunit
           (intein-containing) [Haloquadratum walsbyi DSM 16790]
 gi|109626504|emb|CAJ52966.1| ribonucleoside-diphosphate reductase alpha subunit
           (intein-containing) [Haloquadratum walsbyi DSM 16790]
          Length = 1909

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 157/407 (38%), Gaps = 109/407 (26%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H 
Sbjct: 612 GGMGYAFWKLRPYGDSVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRISHP 671

Query: 458 DVEEFL-----------DLRKNTGDDRRRTH----------------------------- 477
           DV +F+            LR N  DD   T                              
Sbjct: 672 DVIQFIHAKNKDVSLAHSLRLNDPDDFTHTSFADALEEARELIDEEGRVPEHLRNAVEGH 731

Query: 478 --DMNTANWIPDLFMKRVTQNAGWTLFSP------------DEVSDLHDLYGKEFEIAYE 523
             + N +  + D FM+ +  +  +T  +P             E+ +LHDL G+  E+  E
Sbjct: 732 LSNFNISVGVTDEFMEALFADEEFTFTNPRTEDPHIATPETKELYELHDL-GEHVEVGEE 790

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN------IRSPQQHVG 577
                           + A  LW  +++   E G P + + +  N      +    +H  
Sbjct: 791 --------------LSVPAEELWDHIVSGAHENGEPGVIYLERVNKEHSFDVEKHSEHE- 835

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINL--LAH---------FANNQFDYDKLAST-- 624
            + ++N C E  L    EE   CNLG INL  LA          + NN   Y+ L     
Sbjct: 836 -ILATNPCGEQPL----EEYEACNLGHINLSTLADKDAPDWRVWYDNNGDAYNNLDDAAE 890

Query: 625 ---------------IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                          I +  R L+NV+ ++   +++ + +    R IGLG+MG       
Sbjct: 891 AFIYEAIDMNAFNRRIESGTRFLENVVTMSDFPVDEIEATVRDMRKIGLGIMGLAQLYIQ 950

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           + + Y S EA  IA++ M  I+  +  AS ELA+ERG ++ +  S +
Sbjct: 951 IGVRYGSQEANAIAEQLMTHINHESKWASHELAKERGTFNDWTESKY 997



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
           A EF +L+S   FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A
Sbjct: 145 ADEFEDLMSRLSFMPNSPTLMNAGDELQQLSACFVDSPSDDISDIHQTAKEAA 197


>gi|62996794|gb|AAY24447.1| ribonucleoside-diphosphate reductase large chain [Iridovirus IV31]
          Length = 198

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 38/226 (16%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM---KRVTQNAG 498
           G R+G+   YL+  H ++  FL++RK+TGD   R  +++    I D FM   +R T+   
Sbjct: 1   GVRRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLNLHHGINITDKFMELIERCTKEK- 59

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
               + D+  +L D + KE                  V  KISA  LW+++L    +TG 
Sbjct: 60  ----NVDDTWNLIDPHSKE------------------VTDKISAKELWQRILETRLKTGE 97

Query: 559 PWITFKDPCN--IRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           P+I F D CN  +   Q   G+ +  SNLC+E+ L + S  TAVC L S+N L H+  ++
Sbjct: 98  PYICFIDTCNKGMYDFQVEKGLKIKQSNLCSEVLLPTDSSRTAVCCLSSLN-LEHY--DE 154

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT----IEKAKKSNHTHRAIG 657
           +  D L   I+  + +LDN + I        IE+A  S    R+IG
Sbjct: 155 WKDDPLF--IKDVMEMLDNALTIFIENAPKRIERAVNSAKKERSIG 198


>gi|254461385|ref|ZP_05074801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium HTCC2083]
 gi|206677974|gb|EDZ42461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 1225

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 129/571 (22%), Positives = 213/571 (37%), Gaps = 107/571 (18%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  + G 
Sbjct: 182 SSYEHPQPHACFIQSVSDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRADGEQLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQ-GGKRKGA---VC------------------------ 449
            GKS G++ FLK+ +  A A+   G  R+ A   +C                        
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDVQEFINWKVKEEQKVASI 300

Query: 450 ---------------AYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV 493
                            +  W    E+ +D +KN+   D  R     +   IP+ ++KRV
Sbjct: 301 VAGSKMHEQHLNEIFKAIRAWDGSSEDAVDPKKNSQLKDAIRGAKKTS---IPETYVKRV 357

Query: 494 --------------TQNAGWTLFSPDEVSD--------LHDLYGKEFEIAYENYE--RQA 529
                         T +  W   +   VS         + D + K  E A  ++E  R+ 
Sbjct: 358 LDYAKQGYSSIEFPTYDTDWDSEAYASVSGQNSNNSVRVTDSFLKAVE-ADSDWELIRRT 416

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           D     V + I A  LW  +    +    P I + D  N        G +  SN C+E  
Sbjct: 417 DG---TVAKTIKARDLWEDIGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL  + +++F  D+     R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASMNLLKFYKDSKFQADEYVHATRLWTVTLEISVMMAQFPSKEIAQR 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R +GLG       L  +   Y S E           ++  + + S E+A E GA++
Sbjct: 530 SFDFRTLGLGYANIGGLLMNMGHSYDSDEGRAFCGALTAVMTGVSYATSAEMAGELGAFA 589

Query: 710 SFK------------------GSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELK 750
            ++                  G+        I  + L LA   D+  + + +   WD   
Sbjct: 590 GYEKNAGHMLRVIRNHRNAAYGATEGYETLDIKPVALDLANCPDQ-DLTKLAMASWDNAL 648

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
           +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +  
Sbjct: 649 ELGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPT 708

Query: 809 ELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
            L+        +   + Y  G  SIGN   I
Sbjct: 709 ALENLGYGSAQIEEIVSYAVGHASIGNAPGI 739


>gi|188580303|ref|YP_001923748.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium populi BJ001]
 gi|179343801|gb|ACB79213.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium populi BJ001]
          Length = 1243

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 137/617 (22%), Positives = 238/617 (38%), Gaps = 121/617 (19%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C   T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGALTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +R     + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRAENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKN---------TGDDRRRTH---------------------DMNTA------ 482
           +E F+D +           TG      H                     + N A      
Sbjct: 290 IEAFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACIQCEAEGDACFDAERNPALKREIK 349

Query: 483 ----NWIPDLFMKRVTQNA--GWT-----LFSPDEVSD---------------LHDLYGK 516
                 +PD ++KRV Q A  G+T     ++  D  S+               L D + +
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIEFPVYDTDWDSEAYLTVAGQNSNNSVSLTDTFLR 409

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             E A  ++   A R   KV + + A  LW K+    + +  P + F    N        
Sbjct: 410 AVE-ADGDWSLTA-RTTGKVTKTLKARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPTG 467

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDN 634
           G + +SN C+E       ++TA CNL S NLL  +      FD +      R    VL+ 
Sbjct: 468 GRIRASNPCSEYMF---LDDTA-CNLASANLLTMYDRQAKHFDVEAFEHLNRLWTVVLEI 523

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A
Sbjct: 524 SVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDQGRALAGALTAIMTGVA 583

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-------------------- 734
            + S E+A E G + +          +P ++  +L  +R+                    
Sbjct: 584 YATSAEMAAELGTFEA----------YPENADHMLRVIRNHRRAAHGEATGYEGLNVAPV 633

Query: 735 --------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
                   +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+P 
Sbjct: 634 PLDHANIPQGDIGAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPD 693

Query: 786 YQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKK 843
           +  +  K    G  F ++N  + + L+    + E+ I++++ +    G++ + P  +   
Sbjct: 694 FALVKFKKLAGGGYFKIINRAVPDALRALG-YRESEIAEIEAYAVGHGSMGQAPAINPGS 752

Query: 844 IHATAFEIDPMWLIESA 860
           + A  F  D +  +E+ 
Sbjct: 753 LRAKGFSDDKIAAVEAG 769


>gi|302037266|ref|YP_003797588.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
 gi|300605330|emb|CBK41663.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
          Length = 1180

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 125/554 (22%), Positives = 210/554 (37%), Gaps = 107/554 (19%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG         G+S
Sbjct: 177 HPQPHACFIQSIEDDLVNENGIMDLWVREARLFKYGSGTGTNFSRLRG-DGESLSGGGRS 235

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF------------------ 462
            G++ FLK+ +  A A+  GG  R+ A    L+  H D+EEF                  
Sbjct: 236 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPDIEEFIDWKVIEEQKVAAMVTGS 295

Query: 463 --------------------------LDLRKNTGDDRRRTHDMNTA---NWIPDLFMKRV 493
                                     LD++KN     +   D  TA   + +P+ ++ R+
Sbjct: 296 KICAQRLNTVLKACLLVDAQGLGQVELDMKKN-----QVLRDAVTAARRDMVPEAYIHRM 350

Query: 494 TQNA--GWTLFSPDEVSDLHDLYGKEFEIA---------------YENYERQAD-----R 531
              A  G+T F   E     D  GK ++                 ++  E   D     R
Sbjct: 351 FDYAKQGYTHFVFHEYDTNWD--GKAYQTVSGQNSNNSVRIPNGFFDALEGDGDWELRRR 408

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            + K+ + + A  LW K+    +    P   +    N        G +++SN C+E    
Sbjct: 409 IDGKISKTVKARDLWDKIAWAAWICADPGTQYDTTINEWHTCPEDGRINASNPCSEYMF- 467

Query: 592 SSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              ++TA CNL S+NL   F    +FD D     +R     L+  + +         + +
Sbjct: 468 --LDDTA-CNLASLNLSKFFNVEGEFDLDSFRHAVRLWTVALEISVLMASFPSRAIAQKS 524

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG     + L    +PY S +A  I       ++  + + S E+A E G +  
Sbjct: 525 YEYRTLGLGYANLGTILMKQSVPYDSSKATAICGAITAIMTGESYATSAEMAAEIGPFPG 584

Query: 711 F--------------KGSLWDQGVFPIDSIGLL-AEVRDE---LAMNRTSRLPWDELKKR 752
           +              + + +       + + +L   ++ E    AM   +R  WD   + 
Sbjct: 585 YNRNRESMLRVIRNHRRAAYSAAHEEYEGLTILPTSIQPEHCPPAMLLAARRAWDRALEL 644

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
               G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  L   L
Sbjct: 645 GTAYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSLPPAL 704

Query: 811 KQRDLWDEAMISDL 824
           +     D A I D+
Sbjct: 705 QALGYTD-AQIRDI 717


>gi|309782687|ref|ZP_07677408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
 gi|308918465|gb|EFP64141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
          Length = 600

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 209/525 (39%), Gaps = 81/525 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA----VEFYNLLSSFHF 351
           L   +L DRY      +  ++    F RVA  LA  E + ++RA    + + NLL     
Sbjct: 10  LSTAVLADRYLAPGETTCNDV----FKRVAHALAAAE-QPDQRAHFTRLFYANLLQGA-- 62

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPD------DLYGIFGALQENAMLAKYSGGLGNDW 404
           + +   + N+G+  H  + +CF+  +        D   +  AL       +  GG+G D+
Sbjct: 63  IGAGRIMANAGSANHGTMVNCFVHPIGASEQSVADASDVERALHAAQRTLQMGGGVGYDF 122

Query: 405 T---PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
           +   P     A  +   G    V+        T   VN    R GA  A L   H D+  
Sbjct: 123 SVIAPADAEQATSYSGTGSVCAVLDSFDRVCTTQALVN---TRGGAQMAVLRCDHPDLAA 179

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++     R+R    N +  + D FM+ V  +  W L                   A
Sbjct: 180 FITAKRG----RKRWATFNLSVAVTDAFMQAVADDGLWCLQ----------------HRA 219

Query: 522 YENYERQADRGE-IKVFRKISAVALWRKMLTMLFETGH----PWITFKDPCNIRSPQQHV 576
             N +R A     +   +   AV   R++  M+ E  H    P + F D  N  +    +
Sbjct: 220 VPNAQRLATGAHALSNGKWCYAVVPARQLWNMIAEAAHHSAEPGLLFIDTINAANDLAEI 279

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINL-------LAHFANNQFDYDKLASTIRTAV 629
             + ++N C E  L         C LG I++               FD+  L+  +R  V
Sbjct: 280 ETIAATNPCGEQPLPPWGS----CVLGPIDVSRWVQWPFGMGGQPLFDFVGLSQAVRVQV 335

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDN I+I    + +        R IG+G+ G   AL ++ +PY +P A   A +    
Sbjct: 336 RMLDNAIEITRWPLPEHMHEAQAKRRIGVGVTGLADALTMMCLPYDAPAARCFAAQIGRC 395

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  +A +AS  LA ERG Y                   L +  R   + + ++ LP   +
Sbjct: 396 LRDNAYAASAALACERGPYP------------------LFSPERSLASGHFSAALP-KAV 436

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVK 792
            + V   G+RNS+ +++APT +++   G   S  I+P++  +Y +
Sbjct: 437 CEAVAKHGLRNSHLLSLAPTGSVSLAFGDNCSSGIEPAFDWVYQR 481


>gi|53803344|ref|YP_114954.1| ribonucleoside reductase [Methylococcus capsulatus str. Bath]
 gi|53757105|gb|AAU91396.1| ribonucleoside reductase precursor [Methylococcus capsulatus str.
           Bath]
          Length = 1317

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 50/333 (15%)

Query: 598 AVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             C LGS++L    +        F+ ++LA     AVR+LDNV+D     + + ++    
Sbjct: 672 GCCCLGSLDLTRFVSRPFTPEAAFEAERLAEVATIAVRMLDNVLDTTYWPLARQRQEAQA 731

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG  G   AL +L + Y S  A ++A      +   A  AS  LA+E+GA+  F 
Sbjct: 732 KRRIGLGFTGLGDALAMLGLRYDSAAARDMAAGIARRLRDAAYLASTALAREKGAFPLF- 790

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                             E    LA    + LP + L+ R+   G+RNS+ ++IAPT TI
Sbjct: 791 ------------------EAEPYLASPFVAGLP-EPLRARILESGIRNSHLLSIAPTGTI 831

Query: 773 --ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
             A     S  I+P Y   Y++     D +    F V +   R             +  +
Sbjct: 832 SLAFADNTSNGIEPPYAWTYLRKKREPDGS-TREFPVEDHAYR------------LYRAT 878

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGKKLDFI 888
            G+       L     TA +I  +  +   +  Q ++D   ++++N+  D P       +
Sbjct: 879 AGD-----RPLPPAFVTALDISALDHMRMLAAVQPFVDASISKTVNVPADYPYA-DFQHL 932

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGV 919
           Y +AW  GLK   TY     +   +E +   G+
Sbjct: 933 YLEAWKAGLKGLATYRPNPVTGAVLEATPTHGI 965



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 26/299 (8%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           + + L++L ++Y  H      E+   F        A +E+  E R + F  L S F    
Sbjct: 4   QAISLEVLREKYARHGETCAEEI---FARVADALAAAEESPDEWRPLFFSALESGFIPAG 60

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTP 406
              +   +G +   L +CF+  V D +        GI+ AL E A   +  GG+G D++ 
Sbjct: 61  RIMSAAGTGMQA-TLINCFVQPVGDSVSEETDGKPGIYTALAEAAETMRRGGGVGYDFSA 119

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +H T  ++ G + +++V + +   V   G R+GA    L   H D+ EF+  +
Sbjct: 120 IRPRGARVHTTESRASGPVSYMRVFDRSCETVESAGSRRGAQMGILRCEHPDIFEFVRAK 179

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              G+      + N +  + + FM+ V  +  W L    E S      G         Y 
Sbjct: 180 DRPGE----LTNFNLSVALNEDFMRAVETDGPWELTHRAEPSPEQQCEGA--------YL 227

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           R+     + V+R + A  LW  ++   ++   P + F D  N  +   +   + ++N C
Sbjct: 228 REDG---LWVYRSVPARELWELIMRSTYDHAEPGVLFIDRMNRENNLSYCERIEATNPC 283


>gi|37523535|ref|NP_926912.1| ribonucleotide reductase large subunit [Gloeobacter violaceus PCC
            7421]
 gi|35214539|dbj|BAC91907.1| gll3966 [Gloeobacter violaceus PCC 7421]
          Length = 1566

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 55/352 (15%)

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVL 632
            VVH+   C EI L  +S     CNLGSI +++ F +      + D++ LA T+  + R L
Sbjct: 1119 VVHN---CGEIWLPPNS----ACNLGSI-VISKFMHRTERGVELDWEDLARTVEISTRFL 1170

Query: 633  DNVIDINCHTIEKAKKSN--HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            DNV+D+       A+K N  +  R +GLG+MG+   L    IPY S   +   D+   FI
Sbjct: 1171 DNVLDV-AEFATPAQKHNVRNVFRQLGLGIMGWADWLKARRIPYDSEAHLREIDKVGRFI 1229

Query: 691  SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------- 743
            +  A   S  LA E+GA                   G+  E++D    N   R       
Sbjct: 1230 AERAYRTSEALAAEKGA------------------CGIWEEIKDVRPGNPFERWRDSTGR 1271

Query: 744  -LPWDELKKRVKTIGM---RNSNCMAIAPTATIANICGVSQSIDPSY-----QNLYVKSN 794
             L  DE  +R + +     RNS  ++IAPT +IA +   S + +P +     + +YV ++
Sbjct: 1272 VLSGDEAAERAEALTQTPRRNSTVLSIAPTGSIAQLASCSWAFEPDFGLTIWKQVYVDAS 1331

Query: 795  MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             S  ++  + S  V  L   +   + ++        +            KI   + EI  
Sbjct: 1332 SSQQNWVQIPSPYVEALGLGEADRQIVLQTGSLQGTAFAAAHPEEAAAFKI---SREISW 1388

Query: 854  MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
             W + + SR Q W+D + S  +    E + +++  +YR A   GLK     R
Sbjct: 1389 QWHVLAQSRWQNWVDSSISKTINCSRETTVEEIKEMYRFAQRNGLKGITVYR 1440


>gi|295695122|ref|YP_003588360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
 gi|295410724|gb|ADG05216.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
          Length = 1483

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 37/264 (14%)

Query: 609  AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            A F  +   ++ L  T+RT VR  D VID   +  E+ +++    R +GLG+MG    L 
Sbjct: 960  AEFFLHHIRWEALEETVRTGVRFQDAVIDATYYPFEENRENQLGERRVGLGIMGLHDLLI 1019

Query: 669  LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
               + Y S E+  + D  +  ++  +   SVELA+E G +  F+   + Q  +       
Sbjct: 1020 HCGVRYGSEESTRLIDVLIGMMAEWSYLESVELAKENGPFPRFETEKFLQSGY------- 1072

Query: 729  LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                   +A  R        + + ++  G+RN   M IAPT T   + G S   +P Y  
Sbjct: 1073 ----MRHMAAERP------HVVEAIRKYGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAW 1122

Query: 789  LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
             Y +++  G F   N+ +V++              L  H G+  + E +PD       TA
Sbjct: 1123 SYFRNSRLGMFE-ENAQIVDDY-------------LALHPGA--DREHLPD----YFVTA 1162

Query: 849  FEIDPMWLIESASRRQKWIDQAQS 872
             E+ P   +   +  QKWID + S
Sbjct: 1163 MELTPEEHVRVQAALQKWIDSSIS 1186



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 16/148 (10%)

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R+GA+   L   H D+  F+  ++  G         N +  I + FM+   +   W
Sbjct: 395 QGGSRRGALMLILNDRHADLHRFIQAKQVEG----VITGANVSVGISEEFMQVKQRGGDW 450

Query: 500 TLFSP--DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           +L  P  +E+ +    +G+     +E   R+     + V   + A  LW +++T  +++ 
Sbjct: 451 SLGFPRMEEMDEFDGDFGR-----WEATGRK-----LVVTETLPAEELWEEIITSAWKSA 500

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            P + F    N  S   +   + ++N C
Sbjct: 501 EPGVVFLGRYNAMSNSWYYNPIIATNPC 528


>gi|213021498|ref|ZP_03335945.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 194

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 7/195 (3%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +R LG+ I G      G IPF K
Sbjct: 1   SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYK 60

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                  + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L 
Sbjct: 61  HFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLM 120

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+
Sbjct: 121 YTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELF 176

Query: 547 RKMLTMLFETGHPWI 561
             M+     TG  +I
Sbjct: 177 SLMMQERASTGRIYI 191


>gi|194015138|ref|ZP_03053754.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012542|gb|EDW22108.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 262

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A+EF  L+    +  +TPT  N+G  R  ++ SCFL  V D L  I  A+  +  L+K 
Sbjct: 135 KAIEFAKLMIRQEYQPATPTFLNAGRKRRGEMVSCFLLEVNDSLNDISRAIDISMQLSKS 194

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I    G ++GV+  +K+ ++     +Q G+R+GA  AYL  +H
Sbjct: 195 GGGVSLNLSKIRAKGESIKDVAGATKGVVGVMKLLDNAFRYADQMGQRQGAGAAYLNVFH 254

Query: 457 IDVEEFLD 464
            D+ +FLD
Sbjct: 255 ADINDFLD 262


>gi|254443062|ref|ZP_05056538.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
 gi|198257370|gb|EDY81678.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
          Length = 1164

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 204/522 (39%), Gaps = 97/522 (18%)

Query: 365 HPQLSSCFLTTVPDDLYGIFG-ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           HPQ S+CFL  + D +  I    + E  + +  SG +G + + +R     I G  G + G
Sbjct: 212 HPQASACFLMGIEDSMEKILSHQIAEGGVFSSGSG-IGVNLSSIRSSKEPIAG-KGFASG 269

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR---RTHDM 479
            I F K  +  A A+  GGK R+ A    L   H D+ +F+  +    D  +   R H++
Sbjct: 270 PISFDKGFDRMAGAIKSGGKTRRAARMVLLFADHPDIFQFISTKNEQEDIGKIVLREHNV 329

Query: 480 NTA-NWIPDLFMKRVT----QNAGWTLFSPDEVSDLHD------LYGK------------ 516
           + A     ++F  + +      A   L  P      +D      LYG+            
Sbjct: 330 SVALKKKAEVFAVKGSPAERMAARIVLDMPMVTDRQYDSGMDELLYGETLGHQNANHSVS 389

Query: 517 ---EFEIAYENYERQADR---GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
              +F  AY+     A R      KV     A  +   +   ++    P     D  NI 
Sbjct: 390 LKGDFWKAYQTKGEYATRWVSDPTKVEDTFKAEEILDAIAECVWHNAEPGTHNNDFINIW 449

Query: 571 SPQQHVGVVHSSNLCTE-ITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRT 627
           +P +  G + +SN C+E + LN +S     CNL S N+   +  ++     +KL   IR 
Sbjct: 450 NPVKSDGDISTSNPCSEYLHLNFTS-----CNLSSFNVFRFYDRDEKKMKVEKLQKAIRL 504

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+   D  I+     I +     + +R  G+G       L  + IPY S E   IA + +
Sbjct: 505 AMIAADLNIEEGGFPISEIAAGTYRYRTTGIGYANVGGLLMAMGIPYDSDEGRLIASQLV 564

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWD-QGVFPI-----DSIGLLAEVRD------E 735
             ++     AS E+ QE GAY  F+ +  D + V  +     D  G  AE +D       
Sbjct: 565 SLLTSTCWKASSEMGQELGAYPRFESTEADLREVLELHKAVQDLSGAFAEGKDVEKEAEV 624

Query: 736 LAMNRTSRLPWD------------------------ELKKRVKTIG------------MR 759
           +   R SRLP                          E+ K+++ +              R
Sbjct: 625 IFKKRGSRLPMSQGLTALDVLKGYAKSFEKHSVDAPEIAKQLQDVNAATWTEVLAAKRFR 684

Query: 760 NSNCMAIAPTATIANICGV----SQSIDPSYQNLYVKSNMSG 797
           NS    +APT TI+   GV    + S +P Y  +  K N+SG
Sbjct: 685 NSFTTVMAPTGTISAPMGVYDEGTTSAEPDYTLVKYK-NLSG 725


>gi|260460764|ref|ZP_05809014.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
 gi|259033341|gb|EEW34602.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
          Length = 1263

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 27/352 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGKVLKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL SINLL +  A+   D      T+R    VL+  + +     ++  K 
Sbjct: 482 ---LDDTA-CNLASINLLPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKL 537

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++ +R +GLG       L    IPY S E   I       ++  A + S E+A E GA++
Sbjct: 538 SYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGTAYATSAEMASELGAFA 597

Query: 710 SF---------------KGSLWDQGVF---PIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +               + +  D+  +    ++ + L+A    + A+   ++  WD   +
Sbjct: 598 DYDRNAQNMLRVMRNHRRAAYGDKDGYEKLAVNPVPLVASDLKQQALADHAKAAWDRAIE 657

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 658 LGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEA 717

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
           L+    + EA +++++ +    GN+ + P  +   + A  F  D +  + +A
Sbjct: 718 LRTLG-YSEAQLAEIEAYAVGHGNLNQAPGINPGSLKAKGFTDDKIAALNAA 768



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSFLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF+D + N
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVN 299


>gi|91790417|ref|YP_551369.1| ribonucleoside reductase [Polaromonas sp. JS666]
 gi|91699642|gb|ABE46471.1| ribonucleoside reductase [Polaromonas sp. JS666]
          Length = 1189

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 146/315 (46%), Gaps = 53/315 (16%)

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           C+LG I +L  F  N         FD+D    ++ T VR LDNV+D+    + + +  + 
Sbjct: 689 CDLGPI-ILTRFVRNPFGFNGVPDFDFDAFGKSVTTQVRALDNVLDLTFWPLPQQQAESA 747

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IG+G  G  +AL +L + Y +PE  E+A      +   A +ASV LA+E+GA+  F
Sbjct: 748 AKRRIGVGFTGLGNALVMLCLRYDAPEGREMAARIAVCMRDAAYAASVALAKEKGAFLKF 807

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                       D+ G LA           +RLP   L++ ++  G+RNS+ ++IAPT T
Sbjct: 808 ------------DAEGYLAP------GTFANRLP-AGLQQAIRAHGIRNSHLLSIAPTGT 848

Query: 772 I--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +  A     S  I+PS+  +Y +     D +  + + V +   R L+ E           
Sbjct: 849 VSLAFADNASNGIEPSFSWMYRRRKRESDGSTTD-YAVEDHAWR-LYRELG--------- 897

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDF 887
             G+++R+P        +A E+     I      Q ++D A  +++N+ +D  +      
Sbjct: 898 --GDVDRLPG----YFVSALEMSAASHIAMMEAVQPFVDTAISKTVNVPVDY-AYDDFKG 950

Query: 888 IYRQAW---LMGLKT 899
           +Y+QAW   L GL T
Sbjct: 951 LYQQAWRARLKGLAT 965



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 35/281 (12%)

Query: 320 FFMRVAMGLALKETEK---EKRAVEFYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            + RVA  LA  E E    E  A+   NL    + +   M +  T   +      L +CF
Sbjct: 38  LYRRVARALASVEPEAARAEHEALFLENLHAGAIGAGRIMSAAGTSIQA-----TLINCF 92

Query: 373 LTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  V D + G        I+ AL+E A   +  GG+G D++ +R  GA +  T   + G 
Sbjct: 93  VQPVGDCIQGMDDGGYPGIYEALREAAETMRRGGGVGYDFSRIRPRGAEVKATASMASGP 152

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             ++ V + +   V   G R+GA    L   H DV EF+  ++  G    R ++ N +  
Sbjct: 153 CSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVFEFITAKRTPG----RWNNFNVSVG 208

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ +  +  W L        +H        IA   ++R AD   + V++ ++A  
Sbjct: 209 VSDAFMQALGDDQPWEL--------VHRAKPGARLIAQGAFQR-AD--GLWVYQTLAASE 257

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           LW  ++   ++   P I F D  N  +  ++   + ++N C
Sbjct: 258 LWDTVMRSAYDFAEPGILFLDHINQDNNLRYCESIEATNPC 298


>gi|21686784|ref|NP_663284.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
 gi|21637100|gb|AAM70317.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
          Length = 609

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 180/419 (42%), Gaps = 50/419 (11%)

Query: 409 GLGA-HIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLR 466
           G+GA  +  ++ K +    F+++      ++N     RK  +  Y+   +I+    L LR
Sbjct: 108 GVGADFLRSSSSKGEFQNNFVELCKYLNQSINLSATIRKSRMAVYVSLHNINSYLCLSLR 167

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD---LHDLYGKEFEIA 521
           K    +   T ++     +P++FM        A W  F  D   D   L++ YG+++E  
Sbjct: 168 K---QNNLITPNLFYGLMVPNMFMTMFEHEPTAWWYFFDGDYTLDGESLNECYGEKYE-- 222

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            + Y+R   +GE +  ++I    L  ++++ + E G P+I ++D  N+ + Q+ +G V +
Sbjct: 223 -KLYKRMVQKGEYR--KRIMVRELIGELVSCITENGFPYIVWRDYINLYNNQRELGTVQT 279

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV--IDIN 639
            NLC EI   S++   + C L ++N+ A   N   D+ ++   +      +D +  +D N
Sbjct: 280 LNLCAEICQYSTNSFDSHCTLMTLNVAAFCENYPQDWAEIRQDLDCCKIPIDCLPPLDNN 339

Query: 640 ---CHTIEKAKKSNHT---------HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
               H    A  S             R IG+   G   A   + I Y    A   A E  
Sbjct: 340 NMLAHCFYTAYMSTFVLNFMLGDSKRREIGVSPTGLFDA---ICIKYGVEAAYNYAMEKY 396

Query: 688 -----EFISFHAISASVELAQERGAYS-SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                E+I    I ASV   +       +F  S++ +G++  D    L  V   L     
Sbjct: 397 AGLVSEYIYLGCILASVVFNRRYNVTCVNFSRSMYARGLYQFD----LRHVEPVLMQQ-- 450

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID-PSYQNLYVKSNMSGDF 799
               W+ L+  +   GM NS   A APTAT + I  V++S+  P    +  K++ SG F
Sbjct: 451 ----WNSLRPYMMK-GMANSMVTAQAPTATTSLITNVTESVQFPLPGVITTKNSESGRF 504


>gi|319783931|ref|YP_004143407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169819|gb|ADV13357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 139/329 (42%), Gaps = 26/329 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E   
Sbjct: 423 RKDGKVLKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF 482

Query: 591 NSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL SINLL +  A+   D      T+R    VL+  + +     ++  K 
Sbjct: 483 ---LDDTA-CNLASINLLPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKQ 538

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++ +R +GLG       L    IPY S E   I       ++  A + S E+A E GA++
Sbjct: 539 SYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGMAYATSAEMAGELGAFA 598

Query: 710 SFKGSLWD----------------QGV--FPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +  +  +                QG     ++ + L+A    +  +   ++  WD   +
Sbjct: 599 DYDRNAQNMLRVMRNHRRAAYGEKQGYEKLAVNPVPLVASDLKQQDLATHAKAAWDRAIE 658

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 659 LGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEA 718

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           L+    + EA I++++ +    GN+ + P
Sbjct: 719 LRTLG-YSEAQIAEMEAYAVGHGNLNQAP 746



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 190 SSYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG- 248

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN 468
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF+D + N
Sbjct: 249 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVN 300


>gi|9631115|ref|NP_047785.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822383|gb|AAC70334.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 596

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 180/418 (43%), Gaps = 75/418 (17%)

Query: 407 VRGLGAHIHGTNGKSQG-------------VIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           V G G  I   N + QG             +  ++   N  +VA     +RK     +L 
Sbjct: 100 VNGTGVGIGADNLRYQGSAVAGELKNNFVEICQYIDGGNKLSVA-----ERKSRTALFLS 154

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM--KRVTQNAGWTLFSPDEVSD-- 509
             +I+    L LR+    + R T ++     IPDLF+  +R   +A W  F      D  
Sbjct: 155 LHNINSLICLTLRQQ---NARVTPNVFYGLMIPDLFIEAQRRDADASWYFFDGHATLDGA 211

Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPC 567
            L++ YG+E+E  Y      A   E K++ +K++A  +  +++  + E G P++ ++D  
Sbjct: 212 SLNECYGREYEDLY------ARMVEAKLYLKKMNARRVLGEIIMCIAENGFPYVVWRDRV 265

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N  + Q+ +GVV + NLCTEI  ++ S   ++C L ++N  A+      DYD+ A+  R 
Sbjct: 266 NEYNNQKRLGVVQTLNLCTEICQHADSGADSMCTLLTVNAAAYCE----DYDR-AAVFRE 320

Query: 628 AVRVLDNVIDINC-----------HTIEKAKKSNH---------THRAIGLGLMGFQSAL 667
               L     + C           H    A  +             R IG+   G   A+
Sbjct: 321 IEADLAAHGMLECMPPFGGNELFAHCFATAYMATFALNVLLGETARREIGVTPTGLFDAV 380

Query: 668 HLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYS-SFKGSLWDQGVFPIDS 725
           +++    A+ +A+ E A  + E+I    + +S+  ++  G    +F  S + +G+   D 
Sbjct: 381 YIMCGREAAYDAMPECAAAAAEYIYMGCVLSSIAYSRAHGVVCRNFAKSEFSRGLLQFD- 439

Query: 726 IGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                       + R +  L WD ++  +   GM NS   A APTAT + +  V++S+
Sbjct: 440 ------------LRRVAPALRWDAIRPHMMR-GMANSMLTAQAPTATTSLLTNVTESV 484


>gi|170746750|ref|YP_001753010.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653272|gb|ACB22327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1243

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 132/589 (22%), Positives = 228/589 (38%), Gaps = 110/589 (18%)

Query: 347 SSFHFMC--STPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  H+ C   T  L  S +   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHYYCDPQTGVLTKSASAYEHPQPHACFIQSVQDDLVNDGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHID 458
            G++++ +R       G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D
Sbjct: 231 TGSNFSMLRSEN-EKLGGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLR-------------------------------KNTGDD----------RRRTH 477
           +E F+D +                               +  GD           +R   
Sbjct: 290 IEAFIDWKVKEEQKVAALVTGSKVVSKHLTLVMKACTQCEAEGDACFDSERNPALKREIK 349

Query: 478 DMNTANWIPDLFMKRVTQNA--GWT-----LFSPDEVSDLHDLYGKEFEIAYEN------ 524
               A+ +PD ++KRV Q A  G+T     ++  D  S+ +        +A +N      
Sbjct: 350 AARRAS-VPDSYIKRVVQFARQGFTKIEFPVYDTDWDSEAY------LTVAGQNSNNSVS 402

Query: 525 --------YERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                    E  AD     R   KV + + A  LW ++    + +  P + F    N   
Sbjct: 403 LTDDFLRAVEADADWQLTARTTGKVTKTLRARDLWERIGEAAWASADPGLHFNTTMNDWH 462

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAV 629
                G + +SN C+E       ++TA CNL S NLL  +     +FD +      R   
Sbjct: 463 TCPAGGRIRASNPCSEYMF---LDDTA-CNLASANLLTMYDRETKRFDAEAFEHLNRLWT 518

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            VL+  + +     ++  + ++ +R +GLG       L  + +PY S     +A      
Sbjct: 519 VVLEISVMMAQFPSKEIAELSYRYRTLGLGYANIGGLLMTMGLPYDSDAGRALAGALTAI 578

Query: 690 ISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAE 731
           ++  A + S E+A E G + +++                  G         +  + L   
Sbjct: 579 MTGVAYATSAEMASELGTFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLNVAPVALDHA 638

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLY 790
              +  +   +R  WD   K  +  G RN+    IAPT TI  +    +  I+P +  + 
Sbjct: 639 NIPQADLGDHARAAWDRALKLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVK 698

Query: 791 VKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            K    G  F ++N    + L+    + E+ I++++ +    G++ + P
Sbjct: 699 FKKLAGGGYFKIINQAAPDALRALG-YRESEIAEIEAYAVGHGSMGQAP 746


>gi|328553046|gb|AEB23538.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 310

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 135/327 (41%), Gaps = 61/327 (18%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  +    N        ++N   R+IGL
Sbjct: 19  CNLGSMNIVNVMSNQS-----IASTVRIAIDSLTTITRKTNIVNAPAVARANTLMRSIGL 73

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L    IPY S EA + A+     ++F+++  S+E+A+E G  Y  F GS + 
Sbjct: 74  GQMNLHGFLAQNKIPYESEEAKDFANTYFMMVNFYSLQRSMEIAKETGETYYKFDGSTYK 133

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTAT 771
            G +       D      +V++         +  W +LK+ V   G+ +S   AIAPT +
Sbjct: 134 SGEYFDKYVTNDYSPKYQKVKNMFGDQHIPNIEDWMKLKEDVMKYGLYHSYRQAIAPTGS 193

Query: 772 IANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           I+ +   +  + P        +Y N      M G  +  N F   E              
Sbjct: 194 ISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------- 238

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                   A+++D   +++  +  Q+ +DQ  S  L+L D  + 
Sbjct: 239 ------------------------AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTT 274

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + L+ I   A   G+KT YY R++  T
Sbjct: 275 RDLNRIDLYAHHKGIKTLYYARTKDTT 301


>gi|167574090|ref|ZP_02366964.1| hypothetical protein BoklC_29910 [Burkholderia oklahomensis C6786]
          Length = 610

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 33/352 (9%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           HP  +   LT    DL     A+ E  +     G +G D++ +    A        S GV
Sbjct: 105 HPIRAPAALTRFHPDLDR---AIDEARLTLAMGGDVGYDFSAIPPASARPEAEQSTSPGV 161

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              L   +       +   R+ A  A L   H D+  F+  ++  G  R  T ++  A  
Sbjct: 162 CAALDRFDRIGAQAGERDGRRRAQLAVLRCDHPDLLAFVAAKR--GHARWETLELAVA-- 217

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ + Q+  WTL  P   +  HD        A   +           +  + A  
Sbjct: 218 VTDAFMQAIEQDRPWTLRHP---APPHDAASGALPAADGAW----------TYATVPARH 264

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWR+++    +   P + F D  +  +P +    + +++ C    L         C LG+
Sbjct: 265 LWREIVAATRDGEGPGLVFVDAIDAANPLRGRERIDATSPCGAQPLPPYGS----CMLGA 320

Query: 605 INLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           ++L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++  R I
Sbjct: 321 VDL-SRFVRNPFGAGGEPRFDFAAFDAAVRVEVRLLDNALDVTRWPLAAHARESYQKRRI 379

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           G+G+ G    L ++ + Y SP A E+       +  HA +AS ELA ERGA+
Sbjct: 380 GVGVTGLADMLAMMRLRYDSPAAREMTRYIASDLRNHAYAASAELAAERGAF 431


>gi|255523366|ref|ZP_05390336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296188300|ref|ZP_06856692.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|255513020|gb|EET89290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296047426|gb|EFG86868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
          Length = 1012

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 197/517 (38%), Gaps = 100/517 (19%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I         L K   G G +++ +R  G  + G  G S G
Sbjct: 175 QASACFILSIEDKLLGPHSISDQYVTETKLFKGGSGTGTNFSSIRAKGEKLSG-GGFSSG 233

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM--- 479
           ++ FLK  +  A A+  GG  R+ A    L+  H ++ +F+  +    +  R    M   
Sbjct: 234 LMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFMTWKAKEENKVRALGKMGYD 293

Query: 480 ----------------NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
                           N +    D FM +V         +PDE  +L             
Sbjct: 294 MDIDGEAYETVSGQNSNNSVRFSDYFMNKVDNLNN----NPDETIELK------------ 337

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVGV--- 578
                  R ++K+ + I    +W    +  ++   P   F D  N     P    G    
Sbjct: 338 ------GRVDLKLDKTIGVSDIWEAFNSSSWQCADPAPQFSDTFNAWHTCPAGEDGALNA 391

Query: 579 ----VHSSNLCTEIT-LNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRV 631
               ++S+N C E   L+ SS     CNL SIN+   + N  ++FD D     I     +
Sbjct: 392 PYNRINSTNPCGEYAFLDDSS-----CNLASINIYRFYNNTTHKFDIDGYLHVIGLVQLI 446

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L++ I    +  E   + ++  R  GLG+    S   ++   Y S  A  +A   +  ++
Sbjct: 447 LESSIHWGQYPTEDIARKSYLFRPTGLGISNAASLFMVMGYAYDSDGARNLASSLIGILT 506

Query: 692 FHAISASVELAQERGAYSSF-----------KGSLWDQGVFPIDSI------------GL 728
            ++   S  +++E GA+  F           +  +   GV P D I            GL
Sbjct: 507 GYSYYISSLISKEIGAFKKFEINKSYMMRVIRNHVRTAGVDPDDVIKNSKTKYGNDFEGL 566

Query: 729 -LAEVR-DELAMNRTS--------RLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANIC 776
               ++ D   +N+          +  W +     +  G RN+    IAPT TI  A  C
Sbjct: 567 NYTPIKVDHNILNKEGLKYISLCLKDCWGKALSYGEEYGYRNAQVSVIAPTGTISFAMDC 626

Query: 777 GVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQ 812
           G + SI+P + ++  K    G F T++N  +   LK 
Sbjct: 627 GAT-SIEPFFSHIVYKKLSGGGFLTIINPVITVALKN 662


>gi|28210310|ref|NP_781254.1| vitamin B12-dependent ribonucleotide reductase [Clostridium tetani
           E88]
 gi|28202746|gb|AAO35191.1| ribonucleoside-diphosphate reductase (vitamin B12-dependent)
           [Clostridium tetani E88]
          Length = 1047

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 144/608 (23%), Positives = 233/608 (38%), Gaps = 96/608 (15%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I         L K   G G +++ +R  G  + G  G S G
Sbjct: 184 QASACFILSIEDKLLGSHSISDQYVNETKLFKGGSGTGTNFSTIRAKGEKLSG-GGVSSG 242

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++ FLK  +  A A+  GG  R+ A    L+  H ++ +F+  +    D  R    M   
Sbjct: 243 LMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDIDHPEILDFITWKAREEDKVRALGKMGYD 302

Query: 483 NWIPDLFMKRVT-QNAGWTL----FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             I     + V+ QN+  ++    F  ++V +L  +     E+          R +  V 
Sbjct: 303 MDIDGEAYETVSGQNSNNSIRFSDFFMEKVKNLDSMPDDTIELE--------GRVDSSVN 354

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVGVVH-------SSNLCTEI 588
           +K+    LW       +    P   F D  N     P    G V+       S+N C E 
Sbjct: 355 QKVKVKDLWDSFAKSTWMCADPAPQFSDTFNAWHTCPAGEDGNVNAKHNKINSTNPCGEY 414

Query: 589 T-LNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L++SS     CNL SIN+   +   +   D +     +      L+  I       + 
Sbjct: 415 AFLDNSS-----CNLASINIYKFYDGKEKNIDLESYLHVVGLVQLALEASIYWGQFPTKD 469

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +  +  RA GLG+    S L +L  PY S EA  I+   +  ++ ++   S  +A+E 
Sbjct: 470 IAQKTYMFRATGLGITNLASLLMVLGYPYNSTEARNISSALVGLLTGYSYYISSLMAKEI 529

Query: 706 GAYSSF---------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           G +  F                      G   D    P+     L E      ++   + 
Sbjct: 530 GTFEKFSINKPHMLKVIRNHAKVAGSINGLYEDLNYNPVKVDHNLLENIGFSDLSNLLKK 589

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQN-LYVKSNMSGDFTV 801
            W +     +  G RN+    IAPT TI  A  CG + SI+P + + +Y K +  G  TV
Sbjct: 590 SWLKALNSGEEHGYRNAQVSVIAPTGTISFAMDCGAT-SIEPFFSHVVYKKLSGGGMMTV 648

Query: 802 VNSFLVNELKQRDL-WDEAMISDL----------------KYHDGSIGNIERIPDDLKKI 844
            N  +  EL  ++L + +  I D+                KY     G IE  P  LKK 
Sbjct: 649 TNPVI--ELSLKNLGYSKEQIKDILQYVLEKEVVQTKEGFKYEKVLDGKIEGAP-HLKKE 705

Query: 845 HATAFE-----------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF--IYR 890
           H   F+           I+PM  ++  +     I  A S  + L  P+   + DF  +  
Sbjct: 706 HYAIFDTANKCGSGKRYIEPMGHVKMVAALTPLISGAISKTVNL--PNNATIEDFKKVIL 763

Query: 891 QAWLMGLK 898
            +W +G+K
Sbjct: 764 NSWELGVK 771


>gi|169334439|ref|ZP_02861632.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259156|gb|EDS73122.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
          Length = 987

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 150/624 (24%), Positives = 257/624 (41%), Gaps = 87/624 (13%)

Query: 349 FHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGND 403
           +++   + T+  S  R+   Q S+CF+ ++ D L G   I         L K   G+G +
Sbjct: 157 YYYDIKSGTVKESKDRYTRTQASACFILSIKDTLLGDNSISEQYITETKLFKGGSGVGTN 216

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
           ++ +R +      + GKS G++ FLK  +  A A+  GG  R+ A     +  H ++E+F
Sbjct: 217 FSNLRAIN-EGLSSGGKSSGLMSFLKGFDRNAGAIKSGGTTRRAAKMVITDIDHPEIEDF 275

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EI 520
           +  +    D  R    M       D+ M        +   S    ++   L  KEF  ++
Sbjct: 276 ITWKAREEDKVRALGKMGY-----DMSM----DGEAYATVSGQNGNNSVRL-NKEFMQKV 325

Query: 521 AYENYERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN-----IR 570
            + + +  AD     R + KV RK+    LW  +    +    P + F D  N       
Sbjct: 326 LHLDEDPDADFELKGRVDDKVNRKVKVKELWDLICQSTWNCADPAVQFDDTFNDWHTCPA 385

Query: 571 SPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
                VG  H    ++N C+E        +   CNL SIN+   F+  +  + KL   I 
Sbjct: 386 GEDGKVGAKHNRINATNPCSEYAF----LDNTACNLASINIYRFFSKEEGKF-KLNDYIH 440

Query: 627 TAVRVLDNVIDINCH-----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             + ++  V++ + H     T E A+KS H  R  GLGL    S L +L  PY S E   
Sbjct: 441 L-ISLIQLVLEASIHWGQFPTKEVARKS-HLFRTTGLGLANMASLLMVLGYPYDSDEGRN 498

Query: 682 IADESMEFISFHAISASVELAQERGAYSSF---------------KGSL--------WDQ 718
           ++      ++  +   S  +A+E G ++ +               + SL         D 
Sbjct: 499 LSASLCSIMTAQSYLVSSLMAKEVGPFAKYDINKEHLLKVLRNSARCSLAIDDNFEGLDY 558

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANIC 776
               +D   L+ E+  E  +N   ++ W +  +     G+RN+    IAPT TI  A  C
Sbjct: 559 SPVRLDE-DLMTEMGLEEVLN-AGKILWIKAIEGANRYGVRNAQVSVIAPTGTISFAMDC 616

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIG- 832
           G + S++P Y N+  KS   G    +VN  L + L      DE +  I D        G 
Sbjct: 617 GAT-SLEPFYSNVVYKSLAGGGMMELVNPVLEDALINLGYSDEQVDKIKDYLLEKDENGM 675

Query: 833 ----NIERIP---DDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSLNLYLDEPSGK 883
               N+   P   ++ KKI  TA +I P   +   +     I    ++++N+ ++  + K
Sbjct: 676 FVHFNLNDAPYLREEDKKIFETANDISPSGHVLMVAAVTPMISGSVSKTVNMPVN-ATVK 734

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
           ++  IY+ +++ G+K     R  S
Sbjct: 735 EISDIYKLSYITGVKAISVYRDGS 758


>gi|88813364|ref|ZP_01128602.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
 gi|88789422|gb|EAR20551.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
          Length = 1540

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 147/336 (43%), Gaps = 40/336 (11%)

Query: 596  ETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            E   C LGS+NL             FD+++    +    R+LDNV++IN   +E+ ++  
Sbjct: 1155 EFGACLLGSVNLTKFVREPFTERAWFDWEEYRRVVAIFTRMLDNVVEINGLPLERQREEI 1214

Query: 651  HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA--- 707
               R  G+G +G  SAL +L + Y +P+++   + + + ++     A +ELA+E+G    
Sbjct: 1215 LRKRRHGMGFLGLGSALTMLRMQYGAPDSLAFTERAAKEMALAGWRAGLELAEEKGPAPI 1274

Query: 708  ----YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIG 757
                ++  +  L  +     D   +  +V+  +   R SR          EL +R+   G
Sbjct: 1275 MDEEFTLTEALLAKRPEMRKDGYRVGQKVKGRVLWARYSRYMQRIAEADPELVERLAEQG 1334

Query: 758  MRNSNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNMSGDFTV---VNSFLVNEL 810
             R ++  +IAPT TI    AN    S  I+PS+ + Y ++ +         ++ +    L
Sbjct: 1335 ARFTHHSSIAPTGTISLSLAN--NASNGIEPSFAHHYFRNVIRAGRKSKEKIDVYSFELL 1392

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ- 869
              R   D   +  +   D    N   +PD       TA +I P   ++  +  QKWID  
Sbjct: 1393 AYRHFVDPQALPSM---DPQTRN---LPD----YFITADDITPQQHVDIQAAAQKWIDSS 1442

Query: 870  -AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             +++ N+  D P  +    IYR A+  GLK     R
Sbjct: 1443 ISKTANVPTDYPY-EDFKGIYRYAYQQGLKGCTTFR 1477



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           EN ++  ++ G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA 
Sbjct: 573 ENGLMVIHNCGIGYEFSTLRPKGAYVCGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQ 632

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL---FSPD 505
            A  +  H DV +F+  ++  G    R    N +  I D FMK V +   W L    S  
Sbjct: 633 MATFDVGHPDVLDFIRAKREAG----RLRQFNLSLLITDEFMKAVERGTDWPLAFPLSAQ 688

Query: 506 EVS----DLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           E S    DL D   +  +E+        R+      ++FR+I A  +W  ++T  ++   
Sbjct: 689 EASVDGIDLDDPEQVVWREWPSPQTYVTRKDGLVACRIFRRIKAQRIWDMIMTATYDYAE 748

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P     D  N  +       + ++N C 
Sbjct: 749 PGFILIDRVNELNNNWFCEEIRATNPCV 776


>gi|167567021|ref|ZP_02359937.1| hypothetical protein BoklE_30966 [Burkholderia oklahomensis EO147]
          Length = 537

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 33/352 (9%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           HP  +   LT    DL     A+ E  +     G +G D++ +    A        S GV
Sbjct: 32  HPIRAPAALTRFHPDLDR---AIDEARLTLAMGGDVGYDFSAIPPASARPEAEQSTSPGV 88

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              L   +       +   R+ A  A L   H D+  F+  ++  G  R  T ++  A  
Sbjct: 89  CAALDRFDRIGAQAGERDGRRRAQLAVLRCDHPDLLAFVAAKR--GHARWETLELAVA-- 144

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ + Q+  WTL  P   +  HD        A   +           +  + A  
Sbjct: 145 VTDAFMQAIEQDRPWTLRHP---APPHDAASGALPAADGAW----------TYATVPARH 191

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWR+++    +   P + F D  +  +P +    + +++ C    L         C LG+
Sbjct: 192 LWREIVAATRDGEGPGLVFVDAIDAANPLRGRERIDATSPCGAQPLPPYGS----CMLGA 247

Query: 605 INLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           ++L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++  R I
Sbjct: 248 VDL-SRFVRNPFGAGGEPRFDFAAFDAAVRVEVRLLDNALDVTRWPLAAHARESYQKRRI 306

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           G+G+ G    L ++ + Y SP A E+       +  HA +AS ELA ERGA+
Sbjct: 307 GVGVTGLADMLAMMRLRYDSPAAREMTRYIASDLRNHAYAASAELAAERGAF 358


>gi|308172803|ref|YP_003919508.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605667|emb|CBI42038.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 264

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A+E+ +L+    +  STPT  N+G  R  +L SCFL  V D L  I  A+  +  L+K 
Sbjct: 137 KAIEYVDLMMRQEYQPSTPTFLNAGRKRRGELVSCFLLEVGDSLNDISRAIDISMQLSKL 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H
Sbjct: 197 GGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNVFH 256

Query: 457 IDVEEFLD 464
            D+ +FLD
Sbjct: 257 ADINDFLD 264


>gi|260889745|ref|ZP_05901008.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860351|gb|EEX74851.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 315

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 60/339 (17%)

Query: 590 LNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTI 643
           +N+  EE  +     CNLGS+N+     N      ++    + A+  L  V D+ N   +
Sbjct: 9   INAYYEEDTIRRGISCNLGSLNIATVMENK-----RIKEATKAAIDSLTMVSDLTNIDIV 63

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
              KK+N    ++GLG M     L    I Y S EA++  +     ++F+++  S+E+A+
Sbjct: 64  PSIKKANDELHSVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAK 123

Query: 704 ERG-AYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           E+G  +  F+ S +  G +             + I  L E      +   ++  W  LK+
Sbjct: 124 EKGETFKDFEKSEYANGNYFDKYITKEYVPQTEKIKQLFE-----GIYIPTKEDWANLKE 178

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V   G+ N+  MAIAP  + + I   + S+ P                     +V+ ++
Sbjct: 179 QVMKHGVYNAYRMAIAPNQSTSYIMNSTASVMP---------------------VVDTIE 217

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R+  D      + Y          + +D    + +A++++   +++  S  Q+ +DQ  
Sbjct: 218 VREYGDSTTFYPMPY----------LTNDNYFFYKSAYDMNQKNILKLISVIQRHVDQGI 267

Query: 872 SLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           S  LY     S + L  +Y  A  +GLK+ YY R+R AT
Sbjct: 268 STILYTKSTDSTRDLARLYIYAHRLGLKSLYYTRTRKAT 306


>gi|938283|emb|CAA49151.1| ribonucleotide reductase [Saccharomyces cerevisiae]
          Length = 72

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 43/72 (59%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D YG EFE  Y 
Sbjct: 1   DIRKNHGKEEIRARDLLPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYT 60

Query: 524 NYERQADRGEIK 535
            YE++     IK
Sbjct: 61  RYEKEGRGKTIK 72


>gi|168704293|ref|ZP_02736570.1| ribonucleotide-diphosphate reductase subunit alpha [Gemmata
           obscuriglobus UQM 2246]
          Length = 1246

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 202/544 (37%), Gaps = 112/544 (20%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S    P   +CF+  V DDL    GI       A + KY  G G++++ +RG G  + G 
Sbjct: 182 SAYERPAPHACFIQEVADDLVNEGGIMDLWVREARIFKYGSGTGSNFSSLRGEGEPLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLD------------ 464
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+EEF++            
Sbjct: 241 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVLDLDHPDIEEFVNWKVTEEQKVADL 300

Query: 465 ------LRKNTGDDRRRTHDMNTAN---------------------WIPDLFMKRVTQNA 497
                 L K+     R  H    A                       +P+ ++ RV Q A
Sbjct: 301 VTGSRLLNKHLNAIMRALHGHAVAEERYDPTKNAALRKAVLEARAALLPENYIARVLQLA 360

Query: 498 --GWTLFSPDEVSD------LHDLYGK----------EFEIAYEN-----------YERQ 528
             GW     DE          + + G+          EF  A EN            E+ 
Sbjct: 361 RQGWKSIEIDEYDTDWNSKAYYTVSGQNSNNSVRIPNEFMRAVENNGPWQLFWRTELEKA 420

Query: 529 ADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              G   K  + + A  LW ++    +    P + F    N        G + +SN C+E
Sbjct: 421 KKEGRAPKAKKTLPARELWDQISYAAWSCADPGVQFHTTINEWHTCPLDGEIRASNPCSE 480

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  ++TA CNL S+NL   F      +D  A   R AVR+   +++++ +  +   
Sbjct: 481 YLF---LDDTA-CNLASLNLTTFFDTKAGKFDIEA--YRHAVRIWTMILEVSVYMAQFPS 534

Query: 648 KS----NHTHRAIGLGLMGFQSALHLLHIPYASPEA----------------VEIADESM 687
           +S    ++  R +GLG     + L +  I Y S E                    A+ + 
Sbjct: 535 QSVAQKSYDFRTLGLGYANLGALLMVQGISYDSAEGRAQCGALTAIMHAGAYAASAEMAA 594

Query: 688 EFISFHAISAS------VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E   F   +A+      V     R AY++         V+P+  I       D LA  R 
Sbjct: 595 EVGPFARYAANRDHMLRVVRNHRRAAYNAAPAEYEGLSVYPV-GIDARYCPPDLLAAARR 653

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-F 799
                 EL +R    G RN+    +APT TI  +    +  I+P +  +  K    G  F
Sbjct: 654 ESDRMLELGER---HGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 710

Query: 800 TVVN 803
            ++N
Sbjct: 711 KIIN 714


>gi|134303480|ref|YP_001111349.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
 gi|134022866|gb|ABO45415.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
          Length = 683

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 161/365 (44%), Gaps = 51/365 (13%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+     Y+  +   + + L++R+    ++ +  ++  A  IP++FMK+V  N  W LF
Sbjct: 223 KRESNFAVYISIYRDTLYDVLNIRQR---NKNKLLNVFPAVKIPNMFMKKVRNNEAWYLF 279

Query: 503 SPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
              E   L      KEFE  YE +  +     +   RKI     ++ ++  +  TG P+I
Sbjct: 280 DVTESQLLDKTKNEKEFEELYETFVSEQKYTNMYESRKI-----FKDIIKNILMTGSPYI 334

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            F D  N  +  +H+G + + NLC+EIT   + +  + C L S+N+    AN +  +D L
Sbjct: 335 IFIDNVNKFNNIKHLGKIKTLNLCSEITNYCNEDVISTCLLLSVNV----ANFKHQWD-L 389

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG--LGLMGFQSALHLLHI------- 672
            S++     +L    ++N    +   + + T +       +MGF + + L +        
Sbjct: 390 VSSLEN---ILSKEFNVNFKDDDFVIELDETSKLCWSYCKIMGFLATVCLNYFLGSSKRR 446

Query: 673 -----PYASPEAVEIA--DESMEFISF-------HAISASVELAQERGA-YSSFKGSLWD 717
                P    +A+ I+  D+ + F            + ASV  +++ G    +F+ S + 
Sbjct: 447 EIGVSPLGVYDAIIISKTDQPLFFCKLISESLYKGCVLASVAWSKKFGIRCKNFENSCFS 506

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G F  D       +R+    N +    W  LK+ V   GM NS     APTAT + +  
Sbjct: 507 RGEFQFD-------LRNLTYKNISD---WSSLKRDVLLYGMANSLLTCQAPTATTSLLAD 556

Query: 778 VSQSI 782
           V+ S+
Sbjct: 557 VTPSV 561


>gi|9629970|ref|NP_046188.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
 gi|1911278|gb|AAC59031.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
          Length = 593

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 211/498 (42%), Gaps = 68/498 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R+A  +A     K +    F +LL S   + S+    +     P  S+C LT
Sbjct: 24  ETPSGFCTRMANKMAGDHPTKTRL---FKSLLESVALIPSSAVCADKA--DP--SACHLT 76

Query: 375 TVPDDLYGIFGALQE----NAMLAKYSG-GLGNDWTPVRGLGAHIHG-TNGKSQGVIPFL 428
            +    Y     L E     AM    +G G+G D   +R  G+ I G        +  ++
Sbjct: 77  VLSRS-YAAATKLDELNRAVAMCVNGTGVGVGAD--NLRYQGSAIAGELKNNFVEICQYI 133

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
              N+  VA     +RK     +L   +I+    L LR+    + R T ++     IPDL
Sbjct: 134 DGGNNLNVA-----ERKSRTALFLSLHNINALICLTLRQ---QNARVTPNIFYGLMIPDL 185

Query: 489 F--MKRVTQNAGWTLFSPDEVSD---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           F  M++  +NA W LF      D   L++ YG+E    YEN   +  + ++   +K++A 
Sbjct: 186 FIKMQQRDENATWYLFDGHTTLDGASLNECYGEE----YENLYWRMVKAKL-YLKKMNAR 240

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +  +++  + E G P++ ++D  N  + Q+ +G V + NLCTEI  ++ S  +++C L 
Sbjct: 241 RVLGEVIMCITENGFPYVVWRDRVNEYNNQKQLGAVQTLNLCTEICQHADSSASSMCTLL 300

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVL----------DNVIDINCHTIEKAKK----- 648
           ++N  A+  N  +D + +   I+  +             DN +  +C             
Sbjct: 301 TVNAAAYCEN--YDREAVLREIKNDLATHGMLDCMPAFGDNELFAHCFAAAYMATFALNT 358

Query: 649 --SNHTHRAIGLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQER 705
              +   R IG+   G   A++++     +  A+   A    E++      +S+  ++  
Sbjct: 359 LLGDTARREIGVTPTGVFDAVYIMCGKDEAYAAMPRYAALVAEYMYMGCALSSIVYSRAY 418

Query: 706 GAY-SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G    +F  S + +G+   D              N T  L WD ++  +   GM NS   
Sbjct: 419 GVICCNFAKSEFSRGLLQFD------------LRNVTPALQWDSVRHHMMK-GMANSMLT 465

Query: 765 AIAPTATIANICGVSQSI 782
           A APTAT + +  V++S+
Sbjct: 466 AQAPTATTSLLTNVTESV 483


>gi|240141792|ref|YP_002966300.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
 gi|240011734|gb|ACS42959.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
          Length = 1019

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 125/555 (22%), Positives = 212/555 (38%), Gaps = 102/555 (18%)

Query: 378 DDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           DDL    GI       A L KY  G+G++++ VRG    + G  GKS G++ FL++ +  
Sbjct: 3   DDLVNEGGIMDLWVREARLFKYGSGVGSNFSMVRGKDEKLSG-GGKSSGLMSFLQIGDKA 61

Query: 435 AVAVNQGGK-RKGAVCAYLETWHIDV---------EEFLDLRKNTGDDRRRTH------- 477
           A ++  GG  R+ A    ++  H D+         EE+      TG      H       
Sbjct: 62  AASIKSGGTTRRAAKMVIVDIDHPDIEAYIDWKVQEEYKVAALVTGSKVVSKHLNLILKA 121

Query: 478 ----------------------DMNTAN--WIPDLFMKRVTQNA--GWT-----LFSPDE 506
                                 ++  A    +PD ++KRV Q A  G+T     ++  D 
Sbjct: 122 CVNCEAEGAACFDPERNPVLKREIKAARKATVPDAYIKRVVQFASQGFTSIEFPVYDTDW 181

Query: 507 VSD---------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            S+               L D + +  E A  ++   A R   KV + + A ALW K+  
Sbjct: 182 ESEAYLTVSGQNSNNSVSLTDDFLRAVE-ADGDWNLTA-RTTGKVVKTVKARALWDKIGE 239

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             + +  P + F    N        G +  SN C+E       ++TA CNL S NLL   
Sbjct: 240 AAWASADPGLHFNTTMNDWHTCPAGGRIRGSNPCSEYMF---LDDTA-CNLASANLLTLV 295

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +FD   L    R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 296 TRGRFDVAMLEHVCRLWTVVLEISVAMAQFPSARIAELSYRYRTLGLGYANIGGMLMSTG 355

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ------------- 718
           I Y S E   I       ++  A + S E+A E G + ++  +                 
Sbjct: 356 IAYDSHEGRAICGAITAIMTGVAYATSAEMAAELGTFEAYPENAEHMLRVIRNHRRAAHG 415

Query: 719 --------GVFPI--DSIGLLAEVRDEL---AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                    + P+  D  GL   V  +    A+   +   WD      +  G RN+    
Sbjct: 416 ETEGYEGLSINPVALDHAGLDCPVARQYGYDALGEAAVAAWDRALSLGELHGYRNAQASV 475

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L+    +++A I++
Sbjct: 476 IAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPSALRALG-YEQAQIAE 534

Query: 824 LKYHDGSIGNIERIP 838
           ++ +    G++ + P
Sbjct: 535 IEAYAVGHGSLGQAP 549


>gi|167924463|ref|ZP_02511554.1| hypothetical protein BpseBC_38253 [Burkholderia pseudomallei
           BCC215]
          Length = 613

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+IN L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAIN-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|302874475|ref|YP_003843108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
 gi|307690918|ref|ZP_07633364.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           cellulovorans 743B]
 gi|302577332|gb|ADL51344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
          Length = 984

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 194/486 (39%), Gaps = 54/486 (11%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I    +    L K   G G +++ +R  G  + G  G S G
Sbjct: 169 QASACFILSIEDKLLGNHSISQQFETETRLFKGGSGCGTNFSTIRAKGEKLSG-GGVSSG 227

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN-T 481
           V+ FLK  +  A A+  GG  R+ A    L++ H ++ +F+  +       R    M   
Sbjct: 228 VMSFLKGLDRNAGAIKSGGTTRRAAKMVILDSSHPEIMDFITWKAKEEQKVRDLGKMGYD 287

Query: 482 ANWIPDLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            ++  + +     QN   ++ FS D +  +     K  + A ++  +   R +  V + I
Sbjct: 288 ISFDGEAYETVSGQNGNNSVRFSDDFMEKV-----KNLDEAPDSEIQLTGRIDSTVDKSI 342

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-------VVHSSNLCTEIT-L 590
               LW+     +++   P   F D  N     P    G       +++++N C E   L
Sbjct: 343 KVSELWKNFNKAVYDCADPAPMFSDTLNSWHTCPGGEDGKYFEKHNMINATNPCGEYCFL 402

Query: 591 NSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           + +S     CNL S+NLL  +      FD +     I  +  +L+  +       E   +
Sbjct: 403 DDTS-----CNLASLNLLNFYDKFAKIFDIESYLHVIGLSQLLLEASVHFGQFPTEDVAR 457

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             +  R  GLG+    + L L+ +PY S E   +    +  ++ H+   S  +A+    +
Sbjct: 458 KTYMFRTTGLGVANGAALLLLMGLPYDSEEGRTVLSSIIGLMTGHSYYVSAMMAKAISPF 517

Query: 709 SSF---------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
             +                     K +  +    P+     + E      ++ + +  W 
Sbjct: 518 EKYEINKEHMLKVIRNHARVAGAIKTNFENLNYTPVMVNHEILESLKLTDLSMSLKNSWK 577

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNS 804
                    G RN+    IAPT TI  A  C  + SI+P + ++  K  + G++ T+VN 
Sbjct: 578 AALDCGNKYGYRNAQVTVIAPTGTISFAMDCATT-SIEPFFNHIVYKKLVGGNYMTIVNP 636

Query: 805 FLVNEL 810
            L++ L
Sbjct: 637 LLMDAL 642


>gi|221309912|ref|ZP_03591759.1| hypothetical protein Bsubs1_11096 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314235|ref|ZP_03596040.1| hypothetical protein BsubsN3_11022 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319157|ref|ZP_03600451.1| hypothetical protein BsubsJ_10948 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323431|ref|ZP_03604725.1| hypothetical protein BsubsS_11067 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 848

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 61/327 (18%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 557 CNLGSMNIVNVMSNQS-----IASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 611

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E G  Y  F GS + 
Sbjct: 612 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 671

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTAT 771
            G +       D      +V+          +  W +LK+ V   G+ +S   AIAPT +
Sbjct: 672 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVMKYGLYHSYRQAIAPTGS 731

Query: 772 IANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           I+ +   +  + P        +Y N      M G  +  N F   E              
Sbjct: 732 ISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------- 776

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                   A+++D   +++  +  Q+ +DQ  S  L+L D  + 
Sbjct: 777 ------------------------AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTT 812

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + L+ I   A   G+KT YY R++  T
Sbjct: 813 RDLNRIDLYAHHRGIKTLYYARTKDTT 839



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F++   ++  + 
Sbjct: 3   GLQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKFIELAREDKDYY 62

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  Y  E +I  E Y+   +   ++   K +A  L  ++  +  E+G+P+
Sbjct: 63  MFYPHSVYKEYGQYLDELDIN-EMYDELVENPRVRK-AKGNARKLLEQLAILRSESGYPY 120

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLC 585
           I F D  N   P +H+  V  SNLC
Sbjct: 121 IMFADNVNKVHPNEHISKVKFSNLC 145


>gi|288573496|ref|ZP_06391853.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569237|gb|EFC90794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 994

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 40/230 (17%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKS 421
           T   QL +CF+ +V D + GIF ++++ A+++KY GG+G ++  +R  G+ I  GT GK+
Sbjct: 146 TESQQLFACFVISVEDSIEGIFDSVKDAAVISKYGGGVGGNFGNLREFGSDIKGGTGGKA 205

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F++  N     V QGG+R+ A+   L   H DVE F+D +   G    +    N 
Sbjct: 206 SGPVSFMETWNTMGSVVVQGGRRRAALMGMLYDDHPDVERFMDAKVEDG----KLPYFNI 261

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D  + +  Q   + L S                           R +  V + + 
Sbjct: 262 SVSVSDELLTKAAQGGDFHLRS---------------------------RADGSVAKTVK 294

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNI-----RSPQQHVGVVHSSNLCT 586
           A  LW K+    +  G P + F D  N+     ++PQ     + S+N C 
Sbjct: 295 AADLWNKLCRNAWRRGDPGVFFGDRANVDNILKKAPQWR---IESTNPCV 341



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 45/241 (18%)

Query: 600 CNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL A  ++       FD D     +  +V  LD VID   + +E+        R
Sbjct: 486 CNLGSVNLEAFVSSESSGEAVFDMDSFVDQVFRSVYYLDLVIDATSYPLERIADRTKMIR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA------- 707
            +GLGLMG   A  +L I Y S             ++  A++A+V +  E G        
Sbjct: 546 PVGLGLMGLADAAIMLGISYGSESFNRFCRSLGGTMASAALAATVRIVSEEGKDPFPEHR 605

Query: 708 -YSSFKGSLWDQGVFPIDSIGLLAEVRDELA-------MNRTSRLPWD------------ 747
             S    S   +   P D++    E  DE         M RT  +P+             
Sbjct: 606 LVSELMESFRCEAGLP-DAVDRWLERMDEGGFRELLERMRRTDTVPYTLVNTLEALLSAA 664

Query: 748 ------------ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                       E+ + + +  MRNS  +++APT +I+ +   S  I+P++   + +  M
Sbjct: 665 SVHKGDGMGLVREVLEALFSGRMRNSRRLSVAPTGSISMLLDASPGIEPNFAWSWSRKVM 724

Query: 796 S 796
           S
Sbjct: 725 S 725


>gi|7475800|pir||A69927 ribonucleoside-diphosphate reductase (alph) homolog yosO - Bacillus
           subtilis
          Length = 786

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 61/327 (18%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 495 CNLGSMNIVNVMSNQS-----IASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 549

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E G  Y  F GS + 
Sbjct: 550 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 609

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTAT 771
            G +       D      +V+          +  W +LK+ V   G+ +S   AIAPT +
Sbjct: 610 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVMKYGLYHSYRQAIAPTGS 669

Query: 772 IANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           I+ +   +  + P        +Y N      M G  +  N F   E              
Sbjct: 670 ISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------- 714

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                   A+++D   +++  +  Q+ +DQ  S  L+L D  + 
Sbjct: 715 ------------------------AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTT 750

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + L+ I   A   G+KT YY R++  T
Sbjct: 751 RDLNRIDLYAHHRGIKTLYYARTKDTT 777



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  Y  E +I  E Y+   +   ++   K +A  L  ++  +  E+G+P+
Sbjct: 1   MFYPHSVYKEYGQYLDELDIN-EMYDELVENPRVRK-AKGNARKLLEQLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLC 585
           I F D  N   P +H+  V  SNLC
Sbjct: 59  IMFADNVNKVHPNEHISKVKFSNLC 83


>gi|2708498|gb|AAB92484.1| ribonucleotide reductase homolog [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 661

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 61/327 (18%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 370 CNLGSMNIVNVMSNQS-----IASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 424

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E G  Y  F GS + 
Sbjct: 425 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 484

Query: 718 QGVF-----PIDSIGLLAEVRDELAMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTAT 771
            G +       D      +V+          +  W +LK+ V   G+ +S   AIAPT +
Sbjct: 485 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVMKYGLYHSYRQAIAPTGS 544

Query: 772 IANICGVSQSIDP--------SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           I+ +   +  + P        +Y N      M G  +  N F   E              
Sbjct: 545 ISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPG-LSAQNWFFYKE-------------- 589

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                   A+++D   +++  +  Q+ +DQ  S  L+L D  + 
Sbjct: 590 ------------------------AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTT 625

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + L+ I   A   G+KT YY R++  T
Sbjct: 626 RDLNRIDLYAHHRGIKTLYYARTKDTT 652


>gi|126455505|ref|YP_001077113.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1106a]
 gi|167851317|ref|ZP_02476825.1| hypothetical protein BpseB_39126 [Burkholderia pseudomallei B7210]
 gi|242311117|ref|ZP_04810134.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
 gi|126229273|gb|ABN92686.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106a]
 gi|242134356|gb|EES20759.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
          Length = 613

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 36/357 (10%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTL--FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           A    D FM+ V Q+  WTL   +P   +    L G +    Y +               
Sbjct: 219 AVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYAS--------------- 263

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  +WR++++   +   P + F D  +   P +    + +++ C    L         
Sbjct: 264 VPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM-- 321

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++
Sbjct: 322 --LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESY 378

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 379 QKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|86742189|ref|YP_482589.1| ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
           CcI3]
 gi|86569051|gb|ABD12860.1| Ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
           CcI3]
          Length = 1281

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 123/577 (21%), Positives = 230/577 (39%), Gaps = 47/577 (8%)

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           ++ +CF+ +V D +  I    +E  ++ K   G G + + +R     +  + G + G + 
Sbjct: 446 RVHNCFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRS-SKELLSSGGTASGPVS 504

Query: 427 FLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           F++ A+ +A  +  GG  R+ A    L+  H D+ EF++ +    D  R   D   A + 
Sbjct: 505 FMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREEDKIRALRD---AGFD 561

Query: 486 PDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            DL  + +     QNA  ++   DE      + G  F++          R + +V   + 
Sbjct: 562 MDLGGRDIASVQYQNANNSVRVTDEFMRAV-VDGGGFDLRA--------RLDGRVLETVD 612

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE-ITLNSSSEETAVC 600
           A  L+  +    +    P I +    N        G + +SN C+E + L++SS     C
Sbjct: 613 ARGLFHTIAEAAWACADPGIQYDGTINDWHTCPESGRISASNPCSEYVHLDNSS-----C 667

Query: 601 NLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL S+NLL     +  FD +   + +   +  +D  I        +  + +  +R +G+G
Sbjct: 668 NLASLNLLKFLRPDRSFDAEAFVAAVELIITAMDISICFADFPTPEITRVSRAYRQLGIG 727

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS----- 714
                + L      Y S     +A      ++  A   S ELA   GAY  F  +     
Sbjct: 728 YANLGALLMASARAYDSDGGRALAASITSLMTATAYRRSAELAGIVGAYDGFARNADAHR 787

Query: 715 -LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI- 772
            +  +     D++  +    D   +   SR  W   +   +  G RN+    +APT TI 
Sbjct: 788 RVMRKHAAANDAVRSV-HAEDSRILAVASR-EWARAQTVGEKHGWRNAQASLLAPTGTIG 845

Query: 773 -ANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            A  C  +  I+P    + +K  + G    +VN  +   L+     +E + + ++Y    
Sbjct: 846 LAMDCDTT-GIEPDLALVKMKKLVGGASMRIVNQTVPAALQALGYPEETIEAIVEYI-AE 903

Query: 831 IGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG- 882
            G++   P  L+  H   F+       I PM  +   +  Q ++  A S  + +   +  
Sbjct: 904 YGHVIDAP-GLRPEHYEVFDCAIGERAISPMGHVRMMAAVQPFLSGAISKTVNMPSTATV 962

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +++ IY + W +GLK     R         + +KG 
Sbjct: 963 AEVEQIYLEGWRLGLKALAIYRDNCKVGQPLTDVKGA 999


>gi|237509351|ref|ZP_04522066.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001556|gb|EEP50980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 613

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 36/357 (10%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTL--FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           A    D FM+ V Q+  WTL   +P   +    L G +    Y +               
Sbjct: 219 AVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYAS--------------- 263

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  +WR++++   +   P + F D  +   P +    + +++ C    L         
Sbjct: 264 VPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM-- 321

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++
Sbjct: 322 --LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESY 378

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 379 QKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|238562332|ref|ZP_00440615.2| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
 gi|254203557|ref|ZP_04909918.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|254205430|ref|ZP_04911783.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|147745796|gb|EDK52875.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|147755016|gb|EDK62080.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|238522855|gb|EEP86297.1| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
          Length = 677

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 163 MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 222

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 223 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 282

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 283 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 329

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 330 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 385

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 386 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 444

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 445 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 499


>gi|217424388|ref|ZP_03455887.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
 gi|217392853|gb|EEC32876.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
          Length = 594

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 145/357 (40%), Gaps = 36/357 (10%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 80  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 139

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 140 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 199

Query: 482 ANWIPDLFMKRVTQNAGWTL--FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           A    D FM+ V Q+  WTL   +P   +    L G +    Y +               
Sbjct: 200 AVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYAS--------------- 244

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  +WR++++   +   P + F D  +   P +    + +++ C    L         
Sbjct: 245 VPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM-- 302

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++
Sbjct: 303 --LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESY 359

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 360 QKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 416


>gi|153820501|ref|ZP_01973168.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
 gi|126508954|gb|EAZ71548.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
          Length = 277

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 48/296 (16%)

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LD ++D   + +  A++S+   R +G+G++ +   L    + Y+   A  +   + E
Sbjct: 2   VRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGSANGLTHRTFE 61

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747
            + +H + AS++LA+E+G    F  + + +G+ PID+       +D +L         WD
Sbjct: 62  AMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYK-----KDIDLVCAEPLHYDWD 116

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFL 806
           +L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK++  G    VV  F 
Sbjct: 117 KLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSVKASKDGILKQVVPEFT 176

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             +     LW      ++  +DG              +H                  QK+
Sbjct: 177 RLKENYELLW------NIGSNDGY-------------LHLVGI-------------MQKF 204

Query: 867 IDQAQSLNLYLDEPSG--------KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +DQA S N   D PS         KKL      A+  G+KT YY  +R     E++
Sbjct: 205 VDQAISANTNYD-PSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHNTRDGAKDEQT 259


>gi|124381297|ref|YP_001025139.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10229]
 gi|126446010|ref|YP_001079488.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10247]
 gi|126238864|gb|ABO01976.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|261826248|gb|ABN00538.2| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
          Length = 689

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 175 MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 234

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 235 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 294

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 295 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 341

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 342 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 397

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 398 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 456

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 457 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 511


>gi|121597480|ref|YP_990650.1| ribonucleotide reductase-like protein [Burkholderia mallei SAVP1]
 gi|167002214|ref|ZP_02268004.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
 gi|254176553|ref|ZP_04883211.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|121225278|gb|ABM48809.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|160697595|gb|EDP87565.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|243062113|gb|EES44299.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
          Length = 677

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 163 MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 222

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 223 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 282

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 283 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 329

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 330 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 385

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 386 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 444

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 445 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 499


>gi|254187031|ref|ZP_04893546.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
 gi|157934714|gb|EDO90384.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
          Length = 665

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 151 MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 210

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 211 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 270

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 271 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 317

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 318 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 373

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 374 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 432

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 433 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 487


>gi|145639185|ref|ZP_01794792.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271747|gb|EDK11657.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 256

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 47/286 (16%)

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+S+   R++G+G++ +   L    + Y+   A ++   + E I ++ + AS+ LA+E+
Sbjct: 3   AKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQ 62

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCM 764
           GA   F  + + +G+ PID+       +D  A+ +      W+ L+K ++  G+RNS   
Sbjct: 63  GACEYFNETTYAKGILPIDTYK-----KDLDALTQEPLHYDWESLRKDIQEFGLRNSTLT 117

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISD 823
           A+ P+ T + I   +  I+P   ++ +K++  G    V     N +   + LWD      
Sbjct: 118 ALMPSETSSQISNATNGIEPPRGHVSIKASKDGILKQVVPEYENLMDNYELLWD------ 171

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD----E 879
                        IP +   +H                  QK++DQA S N   D    E
Sbjct: 172 -------------IPSNDGYLHLVGI-------------MQKFVDQAISANTNYDPKRFE 205

Query: 880 PSGKKLDFIYRQ---AWLMGLKTTYYLRSR-SATSVEKSTLKGVDG 921
                +  + +    A+  GLKT YY  +R  A  V++    G  G
Sbjct: 206 DGKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQEDLDDGCAG 251


>gi|76818060|ref|YP_336579.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1710b]
 gi|76582533|gb|ABA52007.1| ribonucleoside reductase, intein-containing [Burkholderia
           pseudomallei 1710b]
          Length = 639

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 125 MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 184

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 185 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 244

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 245 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 291

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 292 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 347

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 348 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 406

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 407 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 461


>gi|167829855|ref|ZP_02461326.1| hypothetical protein Bpseu9_39630 [Burkholderia pseudomallei 9]
 gi|226199237|ref|ZP_03794797.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928644|gb|EEH24671.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 613

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|53723300|ref|YP_112285.1| hypothetical protein BPSS2282 [Burkholderia pseudomallei K96243]
 gi|254265005|ref|ZP_04955870.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
 gi|52213714|emb|CAH39768.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|254216007|gb|EET05392.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
          Length = 613

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|53715933|ref|YP_106543.1| hypothetical protein BMAA2027 [Burkholderia mallei ATCC 23344]
 gi|52421903|gb|AAU45473.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
          Length = 594

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 80  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 139

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 140 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 199

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 200 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 246

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 247 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 302

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 303 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 361

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 362 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 416


>gi|114320627|ref|YP_742310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227021|gb|ABI56820.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1095

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 142/333 (42%), Gaps = 38/333 (11%)

Query: 598  AVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              C LGS+NL     +      +FD+ + A  +    R+LDNV++IN   +++ ++    
Sbjct: 712  GACLLGSVNLTKFVRDPFTEKARFDWQEYAEVVSVFTRMLDNVVEINGLPLDEQRREIER 771

Query: 653  HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG------ 706
             R  G+G +G  S L +L + Y   E++   ++    ++       VELA+E+G      
Sbjct: 772  KRRHGMGFLGLGSTLTMLRMKYGEAESLAFTEKVSREMALAGWRTGVELAEEKGPAPIMD 831

Query: 707  -AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMR 759
              Y+  +  L  +    +D   +  +V+  + + R S           EL + +   G R
Sbjct: 832  ETYTVDEAMLAKRPEMAVDGYKVGDKVKGRVLLARYSHYMQRVAEVDAELVEAIAEKGAR 891

Query: 760  NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTV---VNSFLVNELKQRD 814
             S+  +IAPT TI+       S  I+PS+ + Y ++ +         V+ F    L  R 
Sbjct: 892  FSHHTSIAPTGTISLSLANNASNGIEPSFAHHYFRNVIREGRKSKEKVDVFSFELLAYRH 951

Query: 815  LWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQ 871
              D EA+ S       +      +PD       TA  + P   ++  +  QKW+D   ++
Sbjct: 952  FIDPEAVPS-------TDPETRNLPD----YFITADSVTPKQHVDIQAAAQKWVDSSISK 1000

Query: 872  SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + N+  D P     D IYR A+  GLK     R
Sbjct: 1001 TANVPTDYPYEDFKD-IYRYAYQQGLKGCTTFR 1032



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 14/221 (6%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 110 TIQDSMDDILQKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGSLSFMDIYDRM 169

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++  G    R    N +  I + FM+ V 
Sbjct: 170 CFTVSSAGGRRGAQMATFDVGHPDVLDFIRAKREDG----RLRQFNLSLLITEEFMQAVE 225

Query: 495 QNAGWTLFSP----------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
            +A W L  P           +++D   +  +E+         +      +++R + A  
Sbjct: 226 DDAQWPLAFPLTKHEAETDNIDLTDSEQVIWREWPTTEPYISDEQGLVACRIYRTVKARR 285

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           LW  ++T  ++   P     D  N  +       + ++N C
Sbjct: 286 LWDMIMTSTYDFAEPGFILIDRVNEMNNNWFCEDIRATNPC 326


>gi|254192572|ref|ZP_04899011.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
 gi|169649330|gb|EDS82023.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
          Length = 613

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|167908267|ref|ZP_02495472.1| hypothetical protein BpseN_38946 [Burkholderia pseudomallei NCTC
           13177]
 gi|254182480|ref|ZP_04889074.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
 gi|184213015|gb|EDU10058.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
          Length = 613

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|254296584|ref|ZP_04964040.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
 gi|157806542|gb|EDO83712.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
          Length = 613

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|134281694|ref|ZP_01768401.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
 gi|134246756|gb|EBA46843.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
          Length = 613

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 32/355 (9%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D FM+ V Q+  WTL      +   D  G     A   +           +  + 
Sbjct: 219 AVAATDAFMQAVEQDLPWTL---RHTAPPRDAPGGALPGADGAW----------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +WR++++   +   P + F D  +   P +    + +++ C    L           
Sbjct: 266 ARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+ L+ F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAID-LSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYITSDLRHHAYAASAELAAERGAY 435


>gi|149918798|ref|ZP_01907285.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
 gi|149820399|gb|EDM79815.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
          Length = 1239

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 147/382 (38%), Gaps = 45/382 (11%)

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           T  W  D +     QN+  ++  PD    LH        +  +N      R + KV R +
Sbjct: 383 TTGWDSDAYGTVSGQNSNNSVRLPDAF--LH-------AVDADNTWDLTRRTDGKVARTL 433

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW K+    +    P + F    N      + G +++SN C+E       ++TA C
Sbjct: 434 RAAELWDKIAFSAWSCADPGLQFDTTINDWHTCPNSGRINASNPCSEYMF---LDDTA-C 489

Query: 601 NLGSINLLAHFAN------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           NL S+NL+    +             +FD D +    R    VL+  + +      K   
Sbjct: 490 NLASLNLMKFVIDASTPGPRSADMLGEFDVDAIRHACRLWTIVLEVSVLMAQFPSHKIAA 549

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++ +R +GLG     +   +  +PY S EAV I       ++    + S ELA + G +
Sbjct: 550 LSYRYRTLGLGYANLGTYFMVRGVPYDSEEAVAICGGVSALMTGTCYATSAELADKHGPF 609

Query: 709 SSF--------------KGSLWDQGVFPIDSIGLLAEVRDELA----MNRTSRLPWDELK 750
             +              + + +D      +S+  L    D       +   +R  WDE  
Sbjct: 610 PGYEENRDAMLRVIRNHRRAAYDAPRSDYESLNTLPRGIDAQRCPNYLLTAARGAWDEAL 669

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
           +R +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +  
Sbjct: 670 QRGEQSGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPG 729

Query: 809 ELKQRDLWDEAMISDLKYHDGS 830
            L +    D  +   ++Y  G+
Sbjct: 730 ALSRLGYTDSQIDDIVRYCKGA 751



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+  V DDL G  G +      A L KY  G G++++ +RG G  + G  G+S
Sbjct: 193 HPQPHACFIQGVADDLVGEDGIMDLWVREARLFKYGSGTGSNFSQIRGEGEPLSG-GGRS 251

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G++ FL++ +  A A+  GG  R+ A    ++  H D+E+++D +
Sbjct: 252 SGLMSFLRIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEQYIDWK 297


>gi|323448022|gb|EGB03926.1| hypothetical protein AURANDRAFT_7614 [Aureococcus anophagefferens]
          Length = 86

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    +
Sbjct: 2   NGFWSLMCPNECPGLADCHGAEFEALYERYE-----AEGRARKAIPAQQLWFAILDSQVK 56

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           TG P++ +KD CN +S Q+H+G + SSNLC
Sbjct: 57  TGTPYMLYKDACNDKSNQKHLGTIKSSNLC 86


>gi|289207441|ref|YP_003459507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thioalkalivibrio sp. K90mix]
 gi|288943072|gb|ADC70771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thioalkalivibrio sp. K90mix]
          Length = 1089

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 20/282 (7%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTR--HPQ--LSSC 371
           +A F RVA  LA  E   ++  +E  F   L +         L N+G     PQ  L +C
Sbjct: 50  EAMFDRVARALAAVEAPDQRAPIEREFRWALDNGAIPAGR-ILANAGAEAHKPQTTLINC 108

Query: 372 FLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            ++ T+ D L  I  A     +  K   G+G D++ +R  GA + G    + G + F+++
Sbjct: 109 TVSRTIRDSLQAILDANTVAGLTLKAGAGIGYDFSTLRPKGALVAGAGAPTNGPVAFMQI 168

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + T   +   G R+GA  A L+  H D+E F+  ++  G    R    N +  + D F+
Sbjct: 169 FDQTCRTIGAAGGRRGAQMATLDIGHPDIERFILAKRRKG----RLTQFNLSVLVRDAFL 224

Query: 491 KRVTQNAGWTLFSP-----DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA- 544
           + V ++  W L  P      +     DL  +++ +  + Y R  D+G +         A 
Sbjct: 225 EAVERDDEWALAFPLLPVEQDGVPASDLVYRDWPVVEDGY-RVDDQGRVACRVCRRVRAR 283

Query: 545 -LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            LW  ++   ++ G P +   D  N ++      V+ ++N C
Sbjct: 284 ELWETLMRSTYDVGEPGVILIDQVNRQNNAWFDEVIRATNPC 325



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 143/359 (39%), Gaps = 66/359 (18%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLL----AHF-ANNQFDYDKLASTIRTAVRVLDNV 635
            ++ LC              C LGS+NL     A F A+  FD+++    +R   R+LDNV
Sbjct: 695  ANGLCAHNCGEQPLPPDGACLLGSVNLTRFVSAPFSADTAFDWERFERVVRVFTRMLDNV 754

Query: 636  IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
             DI+   + + +      R  G+G++G  SAL +L   Y S  A     E    ++  + 
Sbjct: 755  ADISGLPLPEQRAEMLRKRRHGMGILGLGSALAMLGETYGSESAAGFTAEVCRRLALASW 814

Query: 696  SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE-VRDELAMNRTSRLPWDELKKR-- 752
             A +ELA+E+G        + D+G        L A+ +R + A+        D LK R  
Sbjct: 815  RAGLELAREKG-----PAPIMDEG------FTLTADMLRRQPALAEAGYQVGDVLKGREL 863

Query: 753  ---------------------VKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNL 789
                                 +   G R ++  +IAPT TI+       S  I+P++ + 
Sbjct: 864  HARFSPYMQHVAVQDPALVAALAEEGARFTHATSIAPTGTISFSVANNASNGIEPTFLHH 923

Query: 790  YVKS-NMSGDFT--VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              ++    G  T   V+ +    L  R L D                 E  P+DL     
Sbjct: 924  TTRNIRRPGRRTREAVDCYSYELLAYRALVDP----------------EAGPEDLPANAI 967

Query: 847  TAFEIDPMWLIESASRRQKWIDQA--QSLNLYLDEPSGKKLDFIYRQAWLMGLK--TTY 901
            TA  +     I   +  Q W+D A  ++LN+  D P  +    +Y QAW  GLK  TTY
Sbjct: 968  TAERVGVDAHIRMQAAAQPWVDSAISKTLNVPSDIPF-EGFKEVYLQAWRAGLKGCTTY 1025


>gi|83951851|ref|ZP_00960583.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
 gi|83836857|gb|EAP76154.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
          Length = 1208

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 153/405 (37%), Gaps = 71/405 (17%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R +  V + I A  
Sbjct: 379 VTDAFLKAVKDDADWALI---------------------------NRTDGSVAKTIKARD 411

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +    +    P I F D  N        G +  SN C+E       ++TA CNL S
Sbjct: 412 LWEDVGHAAWACADPGIQFHDTVNAWHTCPEDGEIRGSNPCSEYMF---LDDTA-CNLAS 467

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  F N QFD D      R     L+  + +     ++  + ++  R +GLG     
Sbjct: 468 MNLLTFFKNGQFDADAYVHATRLWTMTLEISVLMAQFPSKEIAQLSYEFRTLGLGYANIG 527

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------ 712
             L  + + Y S E   +       ++  A + S E+A E G ++ ++            
Sbjct: 528 GLLMNMGLGYDSDEGRAMCGALTAVMTGVAYATSAEMAGELGPFAGYERNAAHMLRVIRN 587

Query: 713 ------GSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                 G+        +  + L LA   D+  + + +   WDE     +  G RN+    
Sbjct: 588 HRNAAYGASEGYEALAVKPVPLDLANCPDQ-TLVKLAMASWDEALALGEKHGYRNAQATV 646

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWD---EAM 820
           IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L++        E +
Sbjct: 647 IAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEKLGYGSAEIEEI 706

Query: 821 ISDLKYHDGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           +S    H G+IGN   +           P +L+KI A   +AF+I
Sbjct: 707 VSYAVGH-GTIGNAPGVNHTSLVGHGFGPHELEKIDAALGSAFDI 750



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R        
Sbjct: 164 SSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAE-GESLS 222

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D++EF++ +
Sbjct: 223 GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEFINWK 273


>gi|323513934|gb|ADX89383.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2001_A]
          Length = 1076

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 195/470 (41%), Gaps = 37/470 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L    S +VL+   K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNLGVGWSSLVLNAI-KKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P          LY +++   +  G+  
Sbjct: 64  AEKADKA--HLAMAARLFLGTMYKNAHGGFEERPH---------LY-DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISLN-CRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYE--RQADRGEI---KVFRKISAVALWRKMLTMLFETGHP 559
               +++  Y       +ENY+  +Q     I   K ++ I AV + +  L    +TG  
Sbjct: 347 LHAPEVYKAY-------HENYDSLKQTLNDYILSGKPYKTIKAVEVLKLYLKQRQDTGRM 399

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINL 607
           + T+ D  N  +P +    ++SSNLC   E  + + +  TA+  L   N+
Sbjct: 400 YSTWLDEANYHTPFKE--PIYSSNLCVAPETKILTRNGYTAIAELDGENV 447



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 48/296 (16%)

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+     AL    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+     +  D +   +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYN---KNVDRVHTQKL-RFDWESLRK 923

Query: 752  RVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             + + G +RNS   A  P  + + +   + S+ P  Q+  +K   SG   VV  F   ++
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKK--SGTTKVV--FAAPDI 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             S +L+ D         P  + L DF Y  A  MG+K+ YY  S+S    E ST++
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFYY--ATKMGMKSWYYQNSKSGIKQEGSTIE 1065


>gi|257141158|ref|ZP_05589420.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
          Length = 596

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 169/434 (38%), Gaps = 53/434 (12%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +    A        S
Sbjct: 80  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSDIPPASARPDSGQPAS 139

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L+          +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 140 PGVCAALERFERIGAQAGERDGRRRAQLAVLRCDHPDLPAFAAAKCGPKRGHARWTTLGL 199

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A  + D FM+ V Q+  W L  P    D         + A+              +  + 
Sbjct: 200 AVAVTDAFMRAVEQDLPWALRHPAPPRDAPSGALPAEDGAW-------------TYASVP 246

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWR++++   +   P + F D      P +    + + + C    L           
Sbjct: 247 ARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCGAQPLPPYGSAM---- 302

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 303 LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRVEVRLLDNALDVTRWPLAAHARESYQK 361

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY     
Sbjct: 362 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYVASDLRNHAYAASAELAAERGAY----- 416

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            L D+    +D            A+     LP   +   V+  G+RNS+  + AP A ++
Sbjct: 417 PLCDRQAH-LD------------ALRAGPPLP-HAVCHAVERDGLRNSHLTSFAPVAGVS 462

Query: 774 NICG--VSQSIDPS 785
              G   S  I+P+
Sbjct: 463 LAFGDNCSPGIEPA 476


>gi|325171171|ref|YP_004251146.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323512566|gb|ADX88021.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323513245|gb|ADX88697.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_B]
 gi|323513472|gb|ADX88923.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_A]
 gi|323514162|gb|ADX89610.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2004_A]
          Length = 1076

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 195/470 (41%), Gaps = 37/470 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L    S +VL+   K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNLGVGWSSLVLNAI-KKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P          LY +++   +  G+  
Sbjct: 64  AEKADKA--HLAMAARLFLGTMYKNAHGGFEERPH---------LY-DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISLN-CRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYE--RQADRGEI---KVFRKISAVALWRKMLTMLFETGHP 559
               +++  Y       +ENY+  +Q     I   K ++ I AV + +  L    +TG  
Sbjct: 347 LHAPEVYKAY-------HENYDSLKQTLNDYILSGKPYKTIKAVEVLKLYLKQRQDTGRM 399

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINL 607
           + T+ D  N  +P +    ++SSNLC   E  + + +  TA+  L   N+
Sbjct: 400 YSTWLDEANYHTPFKE--PIYSSNLCVAPETKILTRNGYTAIAELDGENV 447



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 48/296 (16%)

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+     AL    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+     +  D +   +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYN---KNVDRVHTQKL-RFDWESLRK 923

Query: 752  RVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             + + G +RNS   A  P  + + +   + S+ P  Q+  +K   SG   VV  F   ++
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKK--SGTTKVV--FAAPDI 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             S +L+ D         P  + L DF Y  A  MG+K+ YY  S+S    E ST++
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFYY--ATKMGMKSWYYQNSKSGIKQEGSTIE 1065


>gi|323512792|gb|ADX88246.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_D]
 gi|323513020|gb|ADX88473.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_C]
 gi|323513703|gb|ADX89153.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2005_A]
          Length = 1076

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 195/470 (41%), Gaps = 37/470 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L    S +VL+   K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNLGVGWSSLVLNAI-KKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P          LY +++   +  G+  
Sbjct: 64  AEKADKA--HLAMAARLFLGTMYKNAHGGFEERPH---------LY-DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISLN-CRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYE--RQADRGEI---KVFRKISAVALWRKMLTMLFETGHP 559
               +++  Y       +ENY+  +Q     I   K ++ I AV + +  L    +TG  
Sbjct: 347 LHAPEVYKAY-------HENYDSLKQTLNDYILSGKPYKTIKAVEVLKLYLKQRQDTGRM 399

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINL 607
           + T+ D  N  +P +    ++SSNLC   E  + + +  TA+  L   N+
Sbjct: 400 YSTWLDEANYHTPFKE--PIYSSNLCVAPETKILTRNGYTAIAELDGENV 447



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 48/296 (16%)

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+      L    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHTLASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+     +  D +   +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYN---KNVDRVHTQKL-RFDWESLRK 923

Query: 752  RVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             + + G +RNS   A  P  + + +   + S+ P  Q+  +K   SG   VV  F   ++
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKK--SGTTKVV--FAAPDI 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             S +L+ D         P  + L DF Y  A  MG+K+ YY  S+S    E ST++
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFYY--ATKMGMKSWYYQNSKSGIKQEGSTIE 1065


>gi|83717836|ref|YP_440500.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
 gi|167617291|ref|ZP_02385922.1| hypothetical protein BthaB_13373 [Burkholderia thailandensis Bt4]
 gi|83651661|gb|ABC35725.1| Ribonucleotide reductase, barrel domain [Burkholderia thailandensis
           E264]
          Length = 615

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 169/434 (38%), Gaps = 53/434 (12%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +    A        S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSDIPPASARPDSGQPAS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GV   L+          +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PGVCAALERFERIGAQAGERDGRRRAQLAVLRCDHPDLPAFAAAKCGPKRGHARWTTLGL 218

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A  + D FM+ V Q+  W L  P    D         + A+              +  + 
Sbjct: 219 AVAVTDAFMRAVEQDLPWALRHPAPPRDAPSGALPAEDGAW-------------TYASVP 265

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWR++++   +   P + F D      P +    + + + C    L           
Sbjct: 266 ARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCGAQPLPPYGSAM---- 321

Query: 602 LGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++  
Sbjct: 322 LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRVEVRLLDNALDVTRWPLAAHARESYQK 380

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY     
Sbjct: 381 RRIGVGVTGLADMLAMMRLRYDSPAAREMARYVASDLRNHAYAASAELAAERGAY----- 435

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            L D+    +D            A+     LP   +   V+  G+RNS+  + AP A ++
Sbjct: 436 PLCDRQAH-LD------------ALRAGPPLP-HAVCHAVERDGLRNSHLTSFAPVAGVS 481

Query: 774 NICG--VSQSIDPS 785
              G   S  I+P+
Sbjct: 482 LAFGDNCSPGIEPA 495


>gi|289579754|ref|YP_003478220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natrialba magadii ATCC 43099]
 gi|289529307|gb|ADD03658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natrialba magadii ATCC 43099]
          Length = 1416

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 51/278 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A  F   + +  FM ++PTL N+G    QLS+CF+ +  DDL  I    ++ A + +
Sbjct: 142 EDVADTFTEGMENLSFMPNSPTLMNAGDELQQLSACFVMSPDDDLSDIHETAKKAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGVGYGFWKLRPYGDAVGSTGGIASGPITFMRTYDQLCETIAQGGTRRGAQMGIMRVS 261

Query: 456 HIDVEEFLD-----------LRKNTGDDRRRT---------------------------- 476
           H DV EF+            LR N  DD   T                            
Sbjct: 262 HPDVIEFIHAKNKDVSLAHCLRLNDPDDYTYTSFSEALEEARDLIDEDGRVPKHLRNAVE 321

Query: 477 ---HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  + D FM+ +     +T  +P    + H +  +E +  Y  Y    D GE
Sbjct: 322 GHLSNFNISVGVTDGFMEALQNGEEYTFTNP-RTEEPH-IATEETKEMYSRY----DLGE 375

Query: 534 -IKVFRKISAVA--LWRKMLTMLFETGHPWITFKDPCN 568
            I+V   +S  A  +W +++    E G P + + +  N
Sbjct: 376 HIEVGEPLSIPAELIWERIVEGAHENGEPGVIYLERVN 413



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 109/273 (39%), Gaps = 59/273 (21%)

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLL---------------AH------------ 610
            VVH+   C E  L    EE   CNLG INL                AH            
Sbjct: 802  VVHN---CGEQPL----EENEACNLGHINLSTLADTDAPDWRVWSEAHADEYDSQAEAVD 854

Query: 611  -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             F     DY++    I    R L+NV+ ++   +E  +++    R IGLG+MG       
Sbjct: 855  AFLEEAIDYEEFDERISYGTRFLENVVTMSDFPVEDIEQTVRDMRKIGLGIMGLAQLYIQ 914

Query: 670  LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIG 727
            L I Y S E  E+A + M  I+  A + S ELA ERG+++      WD   +  P +   
Sbjct: 915  LGIRYGSEEGNEVARQLMTHINHGAKATSHELATERGSFND-----WDDSKYANPTEYRE 969

Query: 728  LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                   E A +     P            +RN N   IAPT T + +   +   +P Y 
Sbjct: 970  WFEHQTGEDADDWEDGFP------------IRNHNVTTIAPTGTTSMVGNTTGGCEPIYN 1017

Query: 788  NLYVKS---NMSGDFTVV--NSFLVNELKQRDL 815
              Y K+   ++ GD  +V  + + +  L+  D+
Sbjct: 1018 VAYYKNVTDDVQGDEMLVEFDDYFLRTLEANDI 1050


>gi|126444513|ref|YP_001064201.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           668]
 gi|126224004|gb|ABN87509.1| ribonucleotide reductase system [Burkholderia pseudomallei 668]
          Length = 613

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 144/357 (40%), Gaps = 36/357 (10%)

Query: 368 LSSCFLTTV--PDDLYGIFGALQE---NAMLAKYSGG-LGNDWTPVRGLGAHIHGTNGKS 421
           ++SCF+  +  P  L      L E    A LA   G  +G D++ +   GA     +  S
Sbjct: 99  MASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDS 158

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
             V   L   +       +   R+ A  A L   H D+  F   +        R   +  
Sbjct: 159 PDVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLEL 218

Query: 482 ANWIPDLFMKRVTQNAGWTL--FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           A    D FM+ V Q+  WTL   +P   +    L G +    Y +               
Sbjct: 219 AVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYAS--------------- 263

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  +WR++++   +   P + F D  +   P +    + +++ C    L         
Sbjct: 264 VPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSAM-- 321

Query: 600 CNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    + ++
Sbjct: 322 --LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESY 378

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 379 QKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 435


>gi|229172091|ref|ZP_04299656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611434|gb|EEK68691.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 284

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 23  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLSKNKIAYESAEAKEFARTFFMML 79

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 80  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 139

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 140 EDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 180

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 181 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 228

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 229 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 272


>gi|229021468|ref|ZP_04178075.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
 gi|228739830|gb|EEL90220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
          Length = 268

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 7   VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLSKNKIAYESAEAKEFARTFFMML 63

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 64  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 123

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 124 EDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 164

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 165 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 212

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 213 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 256


>gi|229022913|ref|ZP_04179433.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
 gi|228738448|gb|EEL88924.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
          Length = 281

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLSKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|229029124|ref|ZP_04185221.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732182|gb|EEL83067.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 281

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|170118628|ref|XP_001890489.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
 gi|164634518|gb|EDQ98854.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
          Length = 156

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 34/164 (20%)

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           + T   V+QGG +R G    Y+E WH D+ EFLDLRKN G +           W      
Sbjct: 17  SSTGCYVDQGGNQRSGTFTIYIEPWHADIFEFLDLRKNHGMEE-------VCEW------ 63

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA-----L 545
             V  N  W LF P++   L    GK        + R+         RK+   +     +
Sbjct: 64  --VGPNRDWPLFCPNKAPGL----GKVNSAVSRLFTRR---------RKVVPASPFLPRI 108

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           W  +L    +TG P++ ++D  N +S Q+++G + SS+LC EIT
Sbjct: 109 WYAILEAQIKTGGPFMVYRDHTNTKSNQKNLGTIKSSDLCMEIT 152


>gi|14251036|ref|NP_116398.1| T45 [Tupaiid herpesvirus 1]
 gi|14210730|gb|AAK57093.1| T45 [Tupaiid herpesvirus 1]
          Length = 1035

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 199/516 (38%), Gaps = 79/516 (15%)

Query: 312 SRIEMPQAFFMRVAMGLALKETE-------------KEKRAV--EFYNLLSSFHFMCSTP 356
            R E P A  +RVA+ LA++ TE              E + V  ++ + L S   + S  
Sbjct: 430 GREECPLAVAVRVALALAVRSTEVCYGGSYLKVLAMDETQEVFEQYLDDLYSERLLGSVN 489

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA--MLAKYSGGLGNDWTPVRGLGAHI 414
            L  +G         F   + D    ++  L ENA  +L     GL       RG G   
Sbjct: 490 ALAQAGLNESAPQEGFSGRIDDQDVEVW--LDENAQRLLGMMKDGLALSLNVTRGYG--- 544

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL--RKNTGDD 472
           H  +      + +L  A        Q  +R   V  Y + WH      L+L  R  +G D
Sbjct: 545 HAVD------VIYLLAAQARLCRSRQ--RRATFVRVYFDLWHTQAAAILELIERSASGLD 596

Query: 473 RRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 +  A  +P+LF +R     + WT+F  +  ++L++  G EF   Y   ER    
Sbjct: 597 -----GVEFAVNVPNLFFERERHAKSHWTMFPYEHCAELNERTGAEFATVYVQKERN--- 648

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----QQHVGV----VHSSN 583
              +    +S   L+ +++  +  TG   + F D   +  P     Q+V      V   N
Sbjct: 649 ---RCGWSVSLGWLYARLVRAVL-TGRLAVVFPDNVGVYGPLLGTMQNVPTLGPHVDMLN 704

Query: 584 LCTE---------ITLNSSSEETAV-CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +C E         + ++   EE      +  ++L    +            +R AV   D
Sbjct: 705 VCVERHVPVVRFNVNVDDCYEENVPDGRVSEMDLYIVSSGLAISLCHFRRLVRAAVVAGD 764

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            +++ I      +   +   +R + +G  G  + L  + + Y S EAV +A+   E + +
Sbjct: 765 LLLEEIFEQQGPQLGVAFQRYRPLCVGYSGLHTLLLRVGVEYDSDEAVTVAERLAEHLYY 824

Query: 693 HAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDE 748
            A+  SV+L      A S F  + + +G+F  +  G            R   +P   WD 
Sbjct: 825 EALRTSVDLCIAGLPACSWFGHTRYSRGLFAFERHG-----------RRPCSVPERLWDA 873

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           L++ +   GMRN+  +++ P    A + GVS S  P
Sbjct: 874 LREDMSAFGMRNAQLVSLGPGWEQARLAGVSASFYP 909


>gi|225175480|ref|ZP_03729474.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168809|gb|EEG77609.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 673

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G V  FD  KI+ AI+KA  AV G+        + I  +LT Q V+ L +   
Sbjct: 3   IEIKKRDGRVVPFDAEKITDAILKAAKAVGGEN-------KKIAVSLTNQVVSELTKMGY 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + +I  +ED+QD VE  L+++GH +  + Y+LYR  RS +R  +S
Sbjct: 56  NGIIPAVEDVQDTVEKVLIENGHARTAKAYILYRHRRSRIREGKS 100


>gi|149203728|ref|ZP_01880697.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
 gi|149142845|gb|EDM30887.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
          Length = 1226

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 152/404 (37%), Gaps = 69/404 (17%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R +  V + I A  
Sbjct: 396 VTDAFLKAVKDDADWALI---------------------------NRTDGSVAKTIKARD 428

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +    +    P I + D  N        G +  SN C+E       ++TA CNL S
Sbjct: 429 LWEDVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGSNPCSEYMF---LDDTA-CNLAS 484

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  F + +FD D      R     L+  + +     ++  + ++  R +GLG     
Sbjct: 485 MNLLKFFGDGKFDADAYMHATRLWTVTLEISVTMAQFPSKEIAQLSYEFRTLGLGYANIG 544

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------ 712
             L  +   Y S E   +       ++  A + S E+A E GA++ +K            
Sbjct: 545 GLLMNMGFGYDSDEGRALCGALTAIMTGVAYATSAEMAGELGAFAGYKRNSKHMLRVIRN 604

Query: 713 ------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                 G+        +  + L  +   +  +   +   WDE  K  +  G RN+    I
Sbjct: 605 HRNAAYGATEGYEGLAVKPVPLDHKNCPDARLVDLAMASWDEALKLGEKHGYRNAQTSVI 664

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI  +    +  I+P +  +  K    G  F ++N  +   L++   +  A I ++
Sbjct: 665 APTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALEKLG-YGPAQIEEI 723

Query: 825 KYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
             +    G+IGN   I           P++L K+ A   +AF+I
Sbjct: 724 VSYAVGHGTIGNAPGINHTSLIGHGFGPNELAKVDAALGSAFDI 767



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +
Sbjct: 172 FQTGELTKSTSAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 231

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  + G  GKS G++ FLK+ +  A A+  GG  R+ A     +  H D++EF++ +
Sbjct: 232 RAEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEFINWK 290


>gi|256371812|ref|YP_003109636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008396|gb|ACU53963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
          Length = 1331

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 28/366 (7%)

Query: 568  NIRSPQQHVGVVHSSNL--CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLAS 623
            N+  P+ H  +V    +  C+E + L++SS     CNL SINLLA+   +  FD +    
Sbjct: 732  NLSEPKNHSYIVDGIVVRNCSEYMHLDNSS-----CNLASINLLAYLDEDGNFDVEGFRH 786

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            T R  +   D +     +   +  +++  +R +GLG     + L  L +PY S      A
Sbjct: 787  TARVLITAQDILAGNADYPTPRIAETSRAYRQLGLGYANLGAMLMALGLPYDSDGGRAYA 846

Query: 684  DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL----LAEVRDEL-AM 738
                  ++  A   S ELA+  G ++ +     D     +  +G+    LA+V     A+
Sbjct: 847  AAVTALMTGAAYERSAELAERLGPFAGYA----DDAESMLRVLGMHRDALAKVDGAPEAI 902

Query: 739  NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
               +R  WD    R   +G+RN+    +APT TI  +    +  I+P +  +  K+ + G
Sbjct: 903  VEAARASWDMAIARASEVGVRNAQASLLAPTGTIGFLMDCDTTGIEPDFSLVKYKTLVGG 962

Query: 798  D-FTVVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATA---FE 850
                +VN  +   L+     +   + + + L  HD  +G     P+  + + A A   + 
Sbjct: 963  GTMKIVNQTVPRALRTLGYPEHEIDQITAYLAEHDSIVGAPGLKPEH-EAVFACAVGEYP 1021

Query: 851  IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            I P   +      Q ++  A S  + L   S  + ++  Y  AW +G+K     R  S  
Sbjct: 1022 ISPTGHLAMMGAVQPFLSGAISKTVNLPSTSTVEDVEQTYLDAWRLGIKAVALYRDGSKV 1081

Query: 910  SVEKST 915
                ST
Sbjct: 1082 GQPLST 1087



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 110/283 (38%), Gaps = 50/283 (17%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYG 382
           A G    + E++  A E   LL       ++P  FN G      Q S+CF+ +V D +  
Sbjct: 97  ADGYFADDDERDAFADELRWLLVHQRAAFNSPVWFNIGVEGVPQQASACFILSVDDTMES 156

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     E  ++ K   G G + + +R     + G  G + G + F++ A+ +A  +  GG
Sbjct: 157 ILNWYHEEGIIFKGGSGAGVNLSTIRSSVEPLAG-GGTASGPVSFMRGADASAGTIKSGG 215

Query: 443 K-RKGAVCAYLETWHIDVEEF-----LDLRK---------NTGDDRR-----RTHDMNTA 482
           K R+ A    L   H DVEEF     ++ RK         + G D +     +  + N +
Sbjct: 216 KTRRAAKMVILNVDHPDVEEFVWTKAIEERKARVLAEAGFDMGVDGKDAFSIQYQNANNS 275

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V ++  W L                         R    GE+   + + A
Sbjct: 276 VRVTDEFMQAVVEDREWEL-------------------------RAVTTGEVT--KTVRA 308

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             L+ ++    +E   P + F    N      + G ++ SN C
Sbjct: 309 RDLFHQIAEAAWECADPGLQFDTTINRWHTTPNAGRINGSNPC 351


>gi|300853872|ref|YP_003778856.1| putative ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433987|gb|ADK13754.1| predicted ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 1013

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 144/636 (22%), Positives = 236/636 (37%), Gaps = 104/636 (16%)

Query: 367 QLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           Q S+CF+ ++ D L G   I         L K   G G +++ +R  G  + G    S  
Sbjct: 175 QASACFILSIEDKLLGSHSISNQFVTETKLFKGGSGTGTNFSTIRAKGEKLSGGGSSSG- 233

Query: 424 VIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++ FLK  +  A A+  GG  R+ A    L+  H ++ +F++ +    D  R    M   
Sbjct: 234 LMSFLKALDKNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFINWKSKEEDKVRALGKMGYD 293

Query: 483 NWIPDLFMKRVT-QNAGWTLFSPDE----VSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             I     + V+ QN+  ++   DE    VS L        E+          R + K+ 
Sbjct: 294 TDIDGEAYETVSGQNSNNSVRFSDEFMNKVSKLEQNPDDTIEL--------IGRTDPKLN 345

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVGV-------VHSSNLCTEI 588
           R      +W       ++   P   F    N     P    G        ++S+N C E 
Sbjct: 346 RIEKIKNIWDAFNNSAWKCADPAPQFSTTFNAWHTCPAGEDGKLNAPYNRINSTNPCGEY 405

Query: 589 T-LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L+ +S     CNL SIN+   +   NN FD +     I     +L++ I       E 
Sbjct: 406 AFLDDTS-----CNLASINIYKFYNITNNTFDIEGYLHIIDLVQLILESSIHWGQFPTED 460

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +  +  R  GLG+    S   ++  PY S EA  +A   +  ++  +   S  +A+E 
Sbjct: 461 IARKTYLFRTTGLGISNIASLFMVMGYPYDSDEARTLAASLVGILTGESYYVSSLMAKEI 520

Query: 706 GAY---------------------------------SSFKGSLWDQGVFPIDSIGLLAEV 732
           G +                                 ++F     D    P+     + + 
Sbjct: 521 GPFKKFEINKPYMMRVLRNHARAASVDIESLQAILGNNFSNEFEDLNYVPLKVKHSVLKK 580

Query: 733 RDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNL 789
                + +T +  W + LK  +K  G RN+    IAPT TI  A  CG + SI+P + ++
Sbjct: 581 EGLSYIGKTLKDCWINALKSGIK-FGYRNAQVSVIAPTGTISFAMDCGAT-SIEPFFSHI 638

Query: 790 YVKSNMSGDF-TVVNSFLVNELKQRDLWDEAM--------------ISDLKYHDGSIGNI 834
             K    G F T++N  +   LK      E +               +D  Y     G I
Sbjct: 639 VYKKLSGGGFMTIINPVITIALKNLGYTSEQIEDILSYVLEKENVSENDYTYEKILDGKI 698

Query: 835 ERIPDDLKKIHATAFE-----------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           E  P  LK  H + F+           IDPM  ++  +     I  + S  + L + +  
Sbjct: 699 EGAP-HLKDEHLSIFDTSNKCGSGERYIDPMGHVKMVASLTPLISGSVSKTVNLPKTASV 757

Query: 884 KLDF--IYRQAWLMGLK-TTYYLRSRSATSVEKSTL 916
           + DF  +   +W +G+K  T Y  S  A     +TL
Sbjct: 758 Q-DFKDVVLTSWKLGVKGITLYRDSSKAAQPLNTTL 792


>gi|253572016|ref|ZP_04849420.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
 gi|251838196|gb|EES66283.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
          Length = 524

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 59/327 (18%)

Query: 628 AVRVLDNVIDINCHTIEKA-------------------------KKSNHTHRAIGLGLMG 662
           A R++D++ID+    IE+                          KKS    R  G+G+  
Sbjct: 21  AQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRT-GVGITA 79

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F 
Sbjct: 80  EGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQNNPF- 138

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
              I  LAE   EL         + E+KK     G RN  C+ IAPT T + +   +  I
Sbjct: 139 ---IQRLAEADPEL---------YAEMKK----YGRRNIACLTIAPTGTTSLMTQTTSGI 182

Query: 783 DPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK---------YHDGSIG 832
           +P +  +Y  +  ++ + T V+   V+E    D ++E ++   K         Y      
Sbjct: 183 EPVFLPVYKRRRKVNPNDTNVHVDFVDETG--DAFEEYIVFHHKFVTWMEANGYDPAKRY 240

Query: 833 NIERIPDDLKK---IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFI 888
           + E I + + K     AT+ ++D +  ++   R QKW+D + S+ + L     + L + +
Sbjct: 241 SQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRL 300

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y +AW  G K     R  S + V  ST
Sbjct: 301 YVEAWKSGCKGCTVYRDGSRSGVLIST 327


>gi|229057078|ref|ZP_04196470.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720219|gb|EEL71798.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 281

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEV 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|229160404|ref|ZP_04288402.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623128|gb|EEK79956.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 281

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLSKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|268318085|ref|YP_003291804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
 gi|262335619|gb|ACY49416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
          Length = 1354

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQ S+CF+ +V D +  I+  + E+A L K+  G+G DW+ +R     + G  G+  G 
Sbjct: 185 RPQASACFIISVEDSIDDIWQLMAESARLFKFGSGVGADWSKLRSTKEKLSG-GGRPSGP 243

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFL 463
           + F++V + T   +  GGK R+ A+   L+ WH D+ EF+
Sbjct: 244 VSFMRVQDATGATIKSGGKTRRAAIMQTLKVWHPDIMEFV 283



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 37/350 (10%)

Query: 596  ETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            + + CNL S+NL      +  FD ++  + +R  +  ++ ++D   +  EK  +++H +R
Sbjct: 759  DNSACNLASLNLRKFQREDGSFDVERFRAAVRIFITAMEILVDNAGYPSEKIAQNSHDYR 818

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA--QERGAYSSFK 712
             +GLG     + L  + +PY S E   +A      +   A + S E+A  +  G +  F 
Sbjct: 819  PLGLGFANLGAMLMAMGLPYDSDEGRAVAGAITAIMHAEAYARSAEIAAIEHIGPFPGF- 877

Query: 713  GSLWDQGVFPIDSIGLL--AEVRD-----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                ++   P+  +  +  A V D        +   +R     +    +  G RN+    
Sbjct: 878  ----EKNREPMLEVMRMHQAAVEDIHLSCPAYLKEAARESMARMVALGERYGYRNAQATV 933

Query: 766  IAPTATIANICGV-SQSIDP-----SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
            +APT TI+ +    +  I+P      Y+ L  K +  G F +VN+ +   L+ R  + E 
Sbjct: 934  LAPTGTISFMMDCDTTGIEPDIALVKYKLLAGKGD--GMFKIVNNTVPIALR-RLGYSEE 990

Query: 820  MISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMWLIESASRRQKWID 868
             I D+  +      IE  P  LK+ H   F+           I  M  I+  +  Q +I 
Sbjct: 991  QIKDILAYIEENDTIEGAP-HLKEEHLPVFDCAFKPYKGQRFIHYMGHIKMMAACQPFIS 1049

Query: 869  QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             A S  + + E  + +++   Y Q W +GLK     R  S  S   ST K
Sbjct: 1050 GAISKTVNMPEHVTVEEIMDAYIQGWKLGLKALAIYRENSKRSQPLSTRK 1099


>gi|83311845|ref|YP_422109.1| ribonucleotide-diphosphate reductase subunit alpha
           [Magnetospirillum magneticum AMB-1]
 gi|82946686|dbj|BAE51550.1| Ribonucleotide reductase [Magnetospirillum magneticum AMB-1]
          Length = 1245

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 42/330 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   K  + + A  LW ++    +    P I F    N        G +++SN C+E   
Sbjct: 445 RNSAKAAKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINASNPCSEYMF 504

Query: 591 NSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S+NLL  F N    FD D      R    VL+  + +      K  +
Sbjct: 505 ---LDDTA-CNLASLNLLC-FRNEDGSFDVDGFRHACRLWTMVLEISVLMAQFPSPKIAE 559

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L    IPY S +   +       ++  A + S ++A+E GA+
Sbjct: 560 LSYEFRTLGLGYANVGGLLMASGIPYDSDKGRALTGAITALMTGEAYATSADMAEELGAF 619

Query: 709 SSFK--------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
             F+                    G+ ++     +  + L A    +  +   SR  WDE
Sbjct: 620 EGFEKNRAAMMRVIRNHRRAAHGMGTGFEG--LSVTPVPLDAANCPDAPLLAASRQAWDE 677

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFL 806
              + +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +
Sbjct: 678 ALAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMV 737

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIER 836
              L+            L Y++G I  I R
Sbjct: 738 PEALRT-----------LGYNEGDIAEIIR 756



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 211 SAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGEGEKLSG- 269

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 270 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKFISWK 319


>gi|284049138|ref|YP_003399477.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283953359|gb|ADB48162.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 708

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 18/167 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   SFD +KI  AI KA  AVEGK     +R +DI     E+  + +   NK
Sbjct: 1   MKVIKRDGSTVSFDRNKIVTAISKANKAVEGK---ERLRQEDI-----EEIASFVEHKNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI 147
             L+V  EDIQD VE  +M  GH+++ + Y++YR  R+ VR A +  +S  + I+ K K 
Sbjct: 53  KRLLV--EDIQDMVEKQIMIRGHYELAKAYIIYRYNRALVRKANTTDESILSLISNKNKD 110

Query: 148 MMDDGT---LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           +M++ +    +  +++R ++I  E     +D++ ++VL E     +D
Sbjct: 111 VMEENSNKNAVMVSTQR-DLIAGEVS---RDLTRRVVLPEKISRAHD 153


>gi|217958929|ref|YP_002337477.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|229138140|ref|ZP_04266738.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|217068033|gb|ACJ82283.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228645485|gb|EEL01719.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|324325469|gb|ADY20729.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 281

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|222095085|ref|YP_002529145.1| ribonucleoside-diphosphate reductase alpha chain, c-terminal region
           [Bacillus cereus Q1]
 gi|221239143|gb|ACM11853.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus cereus Q1]
          Length = 268

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 7   VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 63

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 64  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 123

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 124 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 164

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 165 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 212

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 213 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 256


>gi|52143987|ref|YP_082842.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228984528|ref|ZP_04144705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155019|ref|ZP_04283133.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195649|ref|ZP_04322415.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|51977456|gb|AAU19006.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228587898|gb|EEK45950.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628577|gb|EEK85290.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775231|gb|EEM23620.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 281

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|229095936|ref|ZP_04226912.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102052|ref|ZP_04232764.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228681372|gb|EEL35537.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687446|gb|EEL41348.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 281

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIGYESAEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|229114890|ref|ZP_04244303.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668582|gb|EEL24011.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
          Length = 281

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H+   +GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELHS---VGLGAMNLHGYLAKNKIGYESAEAKEFARAFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|311992720|ref|YP_004009588.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
 gi|298684503|gb|ADI96464.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
          Length = 768

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 127/593 (21%), Positives = 215/593 (36%), Gaps = 85/593 (14%)

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG-------VKARLLH 270
           KVT + L E L +  L     KP  A H     LY     + + +        V   L+ 
Sbjct: 51  KVTTKELQETLIKYCLA----KPSWAYHRMAGRLYISLLYKQVYDDKIPSIRQVHKNLVK 106

Query: 271 ESMMDFDLVYLANDLKYE---------RDFAFEYLGLQILYDRYFL--HINGSRIEMPQA 319
             MM  D V   +D  Y+         RD    +  ++   ++Y L   ++G   E PQ 
Sbjct: 107 AGMMTNDFVNSYSDEDYKALEKIIDHSRDLDVAHYQIKQSMEKYSLKDRVDGIYYETPQF 166

Query: 320 FFMRVAMGLALKE---TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             MRVAM +   +    E+  R    Y+  S       TP   NSGT +    SC L T 
Sbjct: 167 TMMRVAMRMCQNKGTGAERIARIKRHYDAYSRDMVNVPTPYYTNSGTANSGFLSCCLHTN 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D+L  +  A   + M+   S G+G+  +  R  G  + G   +  G I + + A    +
Sbjct: 227 DDNLLSLAAANHISYMMTAASAGIGSK-SYTRAAGDKVRGGLIEHMGRINYNR-AEVAMI 284

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             N    R G+   + ++  I+    + ++       ++   ++      D F+++   +
Sbjct: 285 NANMQNGRGGSQSQFFDSVDIESIAIIPMKNPMTPLAKQVRGLDYGFCYNDYFVQQAATS 344

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
             + LFS  +  +L         +  YE   ++A  G+ +   K++A      +L    E
Sbjct: 345 GDYYLFSYKDHPELFTAMASNMSVKEYEKLFKKAIAGKNRRL-KVNARDFLMSVLEQSVE 403

Query: 556 TGHPWIT-----------FKDPCNIRSPQQHVGVVHSSNLCTEITL-------------- 590
            G  +             FKDP            +  SNLC EI L              
Sbjct: 404 VGQMYTVNLSIMNGDGTPFKDP------------ILQSNLCLEIRLPTRPYKHITELYKT 451

Query: 591 --NSSSEETAVCNLGSINLLAHFANNQFDYDKLA----STIRTAVRVLDNVIDINCHTIE 644
             +    E AVC +  +++         DY + A      I TA+   D        T +
Sbjct: 452 HYDEGDGEVAVCAIAGVSVGKCITEE--DYKEAAWVALDMIHTAIHETDYPFPQVAFTAK 509

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +   +       G+G++     +      +   E      + ME   F+ + AS+ELA+E
Sbjct: 510 QRMNA-------GVGVVDLAHLMAKNDKNFYDQEGRNFIHKVMERHYFYLLEASIELAEE 562

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
            G       + W  G  PID      +  DE+  +      W+  +K +K  G
Sbjct: 563 FGNAPWMHKTKWPDGWLPIDG---YKKTVDEIC-DEPLHYDWEAKRKIIKERG 611


>gi|47566241|ref|ZP_00237269.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
 gi|47556794|gb|EAL15125.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
          Length = 281

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  I  N  T++KA    H   ++GLG M     L    I Y S EA E A      +
Sbjct: 20  VSDMTIIPNAPTVKKANDELH---SVGLGAMNLHGYLAKNKIAYESVEAKEFARTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+G  +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 77  NYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|110680377|ref|YP_683384.1| ribonucleotide-diphosphate reductase subunit alpha [Roseobacter
           denitrificans OCh 114]
 gi|109456493|gb|ABG32698.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter denitrificans OCh 114]
          Length = 1214

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 131/597 (21%), Positives = 216/597 (36%), Gaps = 109/597 (18%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 177 TRSKSSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEG 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA-------------------------- 447
           + G    S  ++ FLK+ +  A A+  GG  + A                          
Sbjct: 237 LSGGGRSSG-LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWKVVEEQK 295

Query: 448 -----------------VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                            +   ++TW    E+  D  KN    +        A  IP+ ++
Sbjct: 296 VASIVAGSKMHEQKLNLLFEAIKTWDGAEEDAYDPSKNAALKQAIREAKKVA--IPETYV 353

Query: 491 KRV--------------TQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQAD----- 530
           KRV              T +  W   +   VS  +         A+ +  E  AD     
Sbjct: 354 KRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLKAVEEDADWDLIN 413

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW K+    +    P I + D  N        G +  SN C+E   
Sbjct: 414 RVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGEIRGSNPCSEYMF 473

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + +
Sbjct: 474 ---LDDTA-CNLASMNLLTFLKDGEFQIEDYMHAARLWTVTLEISVMMAQFPSKEIAQRS 529

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   I       ++  + + S E+A E G +  
Sbjct: 530 YDFRTLGLGYANIGGLLMNMGHSYDSAEGRAICGALTAIMTGVSYATSAEMAGELGPFPG 589

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +                   G +       ++ + L  +   +  M   +R  WD+  + 
Sbjct: 590 YAKNADNMLRVIRNHRHAAYGKVGGYEDLSVNPVPLDYKSCPDARMIEVARGAWDQALEL 649

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L
Sbjct: 650 GQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPGAL 709

Query: 811 KQRDLWDEAMISDLKYHDG--SIGNIERI-----------PDDLKKIH---ATAFEI 851
           ++       +   + Y  G  +IGN   I           P++L KI    A+AF+I
Sbjct: 710 EKLGYGSAQIEEIVSYAVGHATIGNAPGINHTSLAGHGFGPNELAKIDAALASAFDI 766


>gi|322807124|emb|CBZ04698.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 131

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 32/151 (21%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT   +    +L + + W 
Sbjct: 1   MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEK-KGSFTPKTA---PDLNEENFW- 55

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 56  --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 89

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             E   K++  +Y ++W  G+KT YY+R++S
Sbjct: 90  TPEIKAKEILNMYMESWKQGVKTIYYVRNKS 120


>gi|258624606|ref|ZP_05719544.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
 gi|258583153|gb|EEW07964.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
          Length = 267

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 40/275 (14%)

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
           ++   +K N    AIGLG M     L    I Y S E ++  +     I+FH + AS ++
Sbjct: 6   SVPSVRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGIDFTNCYFAAIAFHCLRASNQI 65

Query: 702 AQER-GAYSSFKGSLWDQGVF--PI--DSIGLLAEVRDELAMNRTSRLP----WDELKKR 752
           A+E+   +  F+ S +  G +  P   +S      V + L       LP    W +LK+ 
Sbjct: 66  AREKQQTFHDFERSRYASGEYFTPYLQESFAPKTPVVNALFERFAVELPTQEDWQQLKEA 125

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N N  A+ PT +I+ I   + SI P    + ++                    
Sbjct: 126 VMRDGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRK------------------- 166

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  +  + Y    + N     D+L   +  A+EI P  +I++ +   + +DQ  S
Sbjct: 167 -----EGQVGRVYYPAPYMTN-----DNL-NYYQDAYEIGPYKIIDTYAAATRHVDQGLS 215

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           L L+     + + ++     AW  G+KT YY+R R
Sbjct: 216 LTLFFPASATTRDINKAQIYAWKKGIKTLYYVRLR 250


>gi|209549016|ref|YP_002280933.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534772|gb|ACI54707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1271

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 136/337 (40%), Gaps = 41/337 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E   
Sbjct: 423 RKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF 482

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRVLDNVIDINCHTIEK 645
               ++TA CNL S+NLL      QF  DK    I  A     VR+   V++++    + 
Sbjct: 483 ---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQF 531

Query: 646 AKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E+
Sbjct: 532 PSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAEM 591

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G + +F                   G         ID + L+     +  +   ++
Sbjct: 592 AAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAK 651

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTV 801
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +
Sbjct: 652 SAWDKALELGERHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 711

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 712 INRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 747



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297


>gi|190891445|ref|YP_001977987.1| ribonucleotide-diphosphate reductase [Rhizobium etli CIAT 652]
 gi|190696724|gb|ACE90809.1| putative ribonucleotide-diphosphate reductase protein [Rhizobium
           etli CIAT 652]
          Length = 1270

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 41/337 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E   
Sbjct: 422 RKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRVLDNVIDINCHTIEK 645
               ++TA CNL S+NLL      QF  DK    I  A     VR+   V++++    + 
Sbjct: 482 ---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQF 530

Query: 646 AKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E+
Sbjct: 531 PSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEM 590

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G + +F                   G         ID + L+     +  +   ++
Sbjct: 591 AAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAK 650

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTV 801
             WD+     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +
Sbjct: 651 SAWDKALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 710

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 711 INRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 746



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297


>gi|218463594|ref|ZP_03503685.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 1170

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 41/337 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E   
Sbjct: 409 RKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF 468

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRVLDNVIDINCHTIEK 645
               ++TA CNL S+NLL      QF  DK    I  A     VR+   V++++    + 
Sbjct: 469 ---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQF 517

Query: 646 AKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E+
Sbjct: 518 PSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEM 577

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G + +F                   G         ID + L+     +  +   ++
Sbjct: 578 AAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAK 637

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTV 801
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +
Sbjct: 638 SAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 697

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +N  +   L+    + E+ I++++ +    GN+ + P
Sbjct: 698 INRAVPEALRTLG-YSESQIAEIEAYAVGHGNLNQAP 733



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 175 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 233

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 234 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 283


>gi|327193111|gb|EGE60021.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 1291

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 135/337 (40%), Gaps = 41/337 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E   
Sbjct: 443 RKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF 502

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRVLDNVIDINCHTIEK 645
               ++TA CNL S+NLL      QF  DK    I  A     VR+   V++++    + 
Sbjct: 503 ---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQF 551

Query: 646 AKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E+
Sbjct: 552 PSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEM 611

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G + +F                   G         ID + L+     +  +   ++
Sbjct: 612 AAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAK 671

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTV 801
             WD+     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +
Sbjct: 672 SAWDKALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 731

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 732 INRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 767



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 209 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 267

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 268 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 317


>gi|158319503|ref|YP_001512010.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
 gi|158139702|gb|ABW18014.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
          Length = 784

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 9/107 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG +  F+PSKI+ AI KA MA    G   ++ V+     +TE+ +   +Q+N 
Sbjct: 2   IQVMKRNGRLVEFNPSKITNAIKKA-MAETKLGVDHNLSVK-----ITEE-IKEKIQNN- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            A  +H+E+IQD VE  LM S    + + Y++YR ER+ +RA Q  S
Sbjct: 54  -AKPIHVEEIQDIVEMLLMSSDRKDVAKRYIIYRNERAKIRANQKSS 99


>gi|146295813|ref|YP_001179584.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409389|gb|ABP66393.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 695

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSNYS-------IAEKLTDQ-VIELLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|254469591|ref|ZP_05082996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
 gi|211961426|gb|EEA96621.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
          Length = 1223

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 154/383 (40%), Gaps = 53/383 (13%)

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  + D F+K VT +  W            DL G+               GE K 
Sbjct: 395 QNSNNSVRVTDGFLKAVTADGEW------------DLIGR-------------IDGETK- 428

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW ++    + +  P + +    N        G + +SN C+E       ++
Sbjct: 429 -KTIKAAELWEQIGYAAWASADPGLQYHTTINEWHTCPQGGEIRASNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           TA CNL S+NLL    ++ QFD+DK     R    VL+  + +     ++  + ++ +R 
Sbjct: 485 TA-CNLASLNLLQFRQDDGQFDFDKFEHATRLWQIVLEISVMMAQFPSKQIAELSYEYRT 543

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
            GLG       L    I Y S E   +       ++    + S E+A E GA+  ++ + 
Sbjct: 544 TGLGYANIGGLLMTSGIAYDSDEGRALCGAITAIMTGVCYATSAEMAGELGAFPRYEENA 603

Query: 716 WD----------------QGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIG 757
            D                QG   + ++ +  +  +  +  +   +RL WD+  +  +  G
Sbjct: 604 KDMLRVIRNHRRAAHSDTQGYEKLSTLPVPLDAANCPQADLVERARLAWDKALELGEKHG 663

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDL 815
            RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+    
Sbjct: 664 YRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRALG- 722

Query: 816 WDEAMISDLKYHDGSIGNIERIP 838
           + EA I +++ +    G+I + P
Sbjct: 723 YSEAEIGEIEAYAVGHGSIAQAP 745



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 20/173 (11%)

Query: 299 QILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Q  YD  RY L         PQ F   +     +    +    V+F            T 
Sbjct: 134 QAFYDELRYMLATQKVAPNSPQWFNTGLHWAYGIDGPSQGHHYVDF-----------ETG 182

Query: 357 TLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G
Sbjct: 183 KLTRSATAYEHPQPHACFIQSVDDDLVNENGIMDLWVREARLFKYGSGTGTNFSSLRASG 242

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
             + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF+
Sbjct: 243 ERLAG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEFV 294


>gi|46202431|ref|ZP_00053222.2| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1224

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 133/333 (39%), Gaps = 48/333 (14%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   K  + + A  LW ++    +    P I F    N        G +++SN C+E   
Sbjct: 423 RNSTKTSKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINASNPCSEYMF 482

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE----KA 646
               ++TA CNL S+NLL  F N+   +D      R A R+   V++I+    +    K 
Sbjct: 483 ---LDDTA-CNLASLNLLC-FRNDDGSFD--VEGFRHACRLWTMVLEISVLMAQFPSPKI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L    IPY S +   +       ++  + + S ++A+E G
Sbjct: 536 AELSYEFRTLGLGYANVGGLLMAGGIPYDSDKGRALIGAITALMTGESYATSADMAEELG 595

Query: 707 AYSSFK--------------------GSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLP 745
           A+  F+                    G+ ++   V P+    L A    +  +   SR  
Sbjct: 596 AFEGFEKNRAAMMRVIRNHRRAAHGMGTGYEGLSVIPVP---LDAANCPDAPLLAASRQA 652

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           WDE   + +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 653 WDEALAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 712

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             +   L+            L Y++G I  I R
Sbjct: 713 RMVPEALRT-----------LGYNEGDIAEIIR 734



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKFISWK 297


>gi|254465729|ref|ZP_05079140.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
 gi|206686637|gb|EDZ47119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
          Length = 1214

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 143/360 (39%), Gaps = 44/360 (12%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N        G +  SN C+E  
Sbjct: 413 NRTDGKVAKVVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYM 472

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL+      F  D+   + R     L+  + +     ++  + 
Sbjct: 473 F---LDDTA-CNLASLNLLSFLKEGLFQADEFMHSCRLWTLTLEISVMMAQFPSKEIAQR 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  A + S E+A E GA+ 
Sbjct: 529 SYDFRTLGLGYANIGGLLMNMGYSYDSDEGRALCGALTALMTGVAYATSAEIAAELGAFP 588

Query: 710 SF------------------KGSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELK 750
            +                  KG+        +  + L +A   D L  +  +   WDE  
Sbjct: 589 GYAKNADHMLRVIRNHRNAAKGNADGYEALSVKPVPLDIASCPDALLTDLAAS-AWDEAL 647

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
           +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + +
Sbjct: 648 ELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPS 707

Query: 809 ELKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
            L+    +  A I ++  +    GSIGN   I           P++L K+ A    AF+I
Sbjct: 708 ALEGLG-YSSAQIEEIVSYAVGHGSIGNAPAINHTSLAGHGFGPNELAKVDAALEAAFDI 766



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  
Sbjct: 177 TKSDSAYEHPQPHACFIQSVSDDLVKDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEP 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIQWK 289


>gi|111184259|gb|ABH08179.1| HSPV074c [Horsepox virus]
          Length = 124

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           YER+F++ Y G + L   Y L IN   +E PQ   MRVA+ +     +    A+E YNLL
Sbjct: 40  YERNFSYNYFGFKTLEKSYLLKINNKIVEKPQHMLMRVAVKIHQWNID---LAIETYNLL 96

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           S   F  ++PTLFN+ T   Q+S CF T
Sbjct: 97  SEKWFTHASPTLFNARTSRHQMSRCFFT 124


>gi|312792793|ref|YP_004025716.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179933|gb|ADQ40103.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 695

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIELLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|158422892|ref|YP_001524184.1| ribonucleotide-diphosphate reductase subunit alpha [Azorhizobium
           caulinodans ORS 571]
 gi|158329781|dbj|BAF87266.1| ribonucleotide reductase large subunit [Azorhizobium caulinodans
           ORS 571]
          Length = 1241

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 139/338 (41%), Gaps = 44/338 (13%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW K+ +  +    P I F    N        G + +SN C+E   
Sbjct: 422 RTDGKVHKTVKARELWDKIGSAAWHCADPGIQFHTTINDWHTCPSGGEIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S+NLL  F +++  FD +     +R    VL+  + +      +  +
Sbjct: 482 ---LDDTA-CNLASLNLL-QFRDSEKRFDVESFEHAVRLWTVVLEISVLMAQFPSRRIAE 536

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE---- 704
            ++ +R +GLG       L    IPY S E   I       ++    + S E+A+E    
Sbjct: 537 LSYEYRTLGLGYANIGGLLMTAGIPYDSAEGRAICGAISAIMTGICYATSAEMAKELGPF 596

Query: 705 ------------------RGAYSSFKGSLWDQGV----FPIDSIGLLAEVRDELAMNRTS 742
                             R AY   KG    +G+     P+D     A  +DE  +   +
Sbjct: 597 PAYEQNATSMLRVIRNHRRAAYGEAKGY---EGLSIAPVPLDH----ASCKDERLVAH-A 648

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FT 800
           +  WD+     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F 
Sbjct: 649 KAAWDKALADGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++N  +   L+    + EA I++++ +    G++ + P
Sbjct: 709 IINGAVPEALRTLG-YSEAQIAEIEAYAVGHGSLAQAP 745



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 10/129 (7%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSG 398
           FY    S   + ST     S   HPQ  +CF+ +V DDL    GI       A L KY  
Sbjct: 175 FYVDYKSGELLAST-----SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGS 229

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457
           G G++++ +RG G  + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H 
Sbjct: 230 GTGSNFSALRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHP 288

Query: 458 DVEEFLDLR 466
           D+E +++ +
Sbjct: 289 DIESYVNWK 297


>gi|316969145|gb|EFV53297.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 208

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +E++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ R  +IDQ+QSLN++
Sbjct: 47  EESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGAFIDQSQSLNIH 106

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + EP+  KL  ++   W  GLKT  YYLR++ A +  + T+
Sbjct: 107 IAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTV 147


>gi|300022474|ref|YP_003755085.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524295|gb|ADJ22764.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1253

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 145/351 (41%), Gaps = 37/351 (10%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + I A  LW ++    + +  P I F    N        G + +SN C+E       
Sbjct: 426 KVTKTIKARDLWEQIGFAAWASADPGIQFHTTINDWHTCPQSGQIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           ++TA CNL S+NLL     ++ FD +      R    VL+  + +      +  + ++ +
Sbjct: 483 DDTA-CNLASLNLLRFRREDKSFDIESYEHGCRLWTIVLEISVLMAQFPSRRIAELSYRY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S E   I       ++  + +AS E+A + GA+  ++ 
Sbjct: 542 RTLGLGFANIGGLLMSAGIPYDSDEGRAICGAISAIMTGVSYAASAEMAAKLGAFPGYEP 601

Query: 714 SLWD----------------QGV-------FPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  D                QG         P+D     A ++D   +   ++L WD   
Sbjct: 602 NAADMLRVMRNHRRAAHGEAQGYEQLATAPVPLDH----ASLKDH-RLGEAAKLAWDRAL 656

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
           +  +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +  
Sbjct: 657 ELGQNHGYRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPE 716

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
            L+    + E+ I++++ +    G++ + P  +   + A  F  D +  IE
Sbjct: 717 ALRTLG-YRESEIAEVEAYAVGHGSLAQAPAINTATLKAKGFTDDALAKIE 766



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            S   HPQ  +CF+ +V DDL G  G +      A L KY  G G++++ +RG    + G
Sbjct: 188 TSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGSNFSSLRGANEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
             G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE++
Sbjct: 248 -GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYI 294


>gi|312623134|ref|YP_004024747.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203601|gb|ADQ46928.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 695

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIEILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|222528565|ref|YP_002572447.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455412|gb|ACM59674.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 695

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIEILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|302871165|ref|YP_003839801.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574024|gb|ADL41815.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 695

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIEILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|312128309|ref|YP_003993183.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778328|gb|ADQ07814.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 695

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIEILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|312134451|ref|YP_004001789.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
 gi|311774502|gb|ADQ03989.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
          Length = 695

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIEILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|305682413|dbj|BAJ16294.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 100/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   LK + L
Sbjct: 145 -----TAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLKSKGL 197


>gi|78044308|ref|YP_360870.1| anaerobic ribonucleoside triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996423|gb|ABB15322.1| anaerobic ribonucleoside-triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 671

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FDP+KI+ AI KA  AV G+    +++       LT Q V   L+   +
Sbjct: 4   EIIKRDGRVVPFDPNKITEAIFKAARAVGGEDRETALK-------LTLQ-VLGYLKAKYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + ++ED+QD VE  L+++GH K  + Y+LYR +R+ +R  +S
Sbjct: 56  GNLFNVEDVQDAVEKILIENGHAKTAKAYILYRAKRTAIREGKS 99


>gi|188584769|ref|YP_001916314.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349456|gb|ACB83726.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 736

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 9/105 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G    FDPSKI+ AI KA  A++ +  S ++       +LT Q + +L +H  
Sbjct: 17  TKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLAL-------SLTYQVINKLTKHGV 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V    IQ+ VE SLM +GH+++ R YV+YR +R  +R A +
Sbjct: 70  DKPTV--PQIQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADT 112


>gi|305682403|dbj|BAJ16289.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 101/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSSAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|322785763|gb|EFZ12389.1| hypothetical protein SINV_05398 [Solenopsis invicta]
          Length = 209

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 25/186 (13%)

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL---HDLYGKEFEIAYENYERQA 529
           R     M    W PDLFMKRV           D++S+L   H+  G   EI  + YE+  
Sbjct: 31  RSSFESMCYGLWTPDLFMKRVY----------DDISNLICSHECPGL-IEII-DIYEK-- 76

Query: 530 DRGEIKVFRKISAVALWRKMLTML-FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +G++ +  K  A  L R ++  + FET  P+I FKD  N +S  Q++G +  S+ CTE+
Sbjct: 77  -KGQV-LKDKFKARELIRLLIIQIQFETEVPYIVFKDYYNRKSNYQNLGTIECSSFCTEV 134

Query: 589 TLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-- 644
              SSS E A+CN+ SI  N+  +     FD+ KL   I  +V+ L + + +  +  E  
Sbjct: 135 VQYSSSGEVAMCNVASITVNMFMNSTKRIFDFYKL-KFIGVSVQELADALILMRYVFESN 193

Query: 645 KAKKSN 650
           KAK+ N
Sbjct: 194 KAKEFN 199


>gi|312878494|ref|ZP_07738382.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794730|gb|EFR11171.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 203

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q V  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQ-VIELLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMR 95


>gi|242278302|ref|YP_002990431.1| ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
 gi|242121196|gb|ACS78892.1| Ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
          Length = 894

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 172/416 (41%), Gaps = 42/416 (10%)

Query: 505 DEVSDLHDLYGKEFEIAYE-NYERQADRG-EIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +E SD+ D     +   ++ +Y R  + G  ++ +  + A  L  ++    +++G P I 
Sbjct: 323 NETSDIFDPVKSVYNTLWDGDYSRWQELGLPLRKYDTVKARDLLEEISESAWKSGDPGIL 382

Query: 563 FKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           ++D     +P  ++  +     S+N C E  L   S     C LG++ L  +  N     
Sbjct: 383 YQDTTQRNTPGTYIDPLRLKPMSTNPCGEQALGYWSN----CLLGAMVLYRYVVNPFTKE 438

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +FD D     +   +  +D + D+N   H ++K + ++   + IG+   G    L +L 
Sbjct: 439 ARFDSDLFHDDLTRTMAFMDTMSDLNQNKHPLQKHRDADKYGKRIGIEFTGLGDMLAMLG 498

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S E++E   E M   +   IS S  +A+  G   + K     Q       I  L  
Sbjct: 499 MRYGSEESIEFIKEIMRDKAITEISVSANIAERFGEVEALKTKDARQRFLDCPYISKLG- 557

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
                       LP ++L+K++   G+R++    + P+ +I+ +    +  I+P +   Y
Sbjct: 558 ------------LP-NKLQKKILKTGLRHTAFNTVGPSGSISIMSDNCTSGIEPVFMFSY 604

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +        V     +  LK    W   M+   + H        ++ + L  + A   E
Sbjct: 605 ARETRLEAGKVFEFIHMPPLK----W---MLETNQEHLFGKYTALQLKEKLNYVQAD--E 655

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-IYRQAWLMGLKTTYYLRS 905
           +D M  I   +  Q++ D + S  + L E + K+  F IY ++W  GLK     R+
Sbjct: 656 LDYMDRIRMQAAIQQYTDSSISSTINLAEETPKETIFEIYLESWKHGLKGVTVFRN 711



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 330 LKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQ--LSSCFLTTV-PDDLYGIFG 385
           LK ++ EK   E    LL S  F+ +   L   G  H +  LS+C+L  +  D L GIF 
Sbjct: 57  LKNSQFEKNENEQVCELLQSGRFIPAGSILSGLGNEHAKCSLSNCYLAKIESDSLEGIFE 116

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A ++ A    Y GG G D T +R  G  ++     S G + F+ + ++    + Q G R+
Sbjct: 117 AQKKLARTYSYRGGSGIDITILRPSGDPVNNAAVTSSGAVSFMPLFSELTNTIGQNG-RR 175

Query: 446 GAVCAYLETWHIDVEEFLDLRKNT----GDDR--RRTHDMNTANW---IPDLFMKRVTQN 496
           GA+   ++  H +   F+  +       G D    +  D+  AN    + D FM+ V ++
Sbjct: 176 GALMISIDIRHPETRRFIWCKSKPEEIFGVDSLTGKVQDVFGANISLKVTDEFMQAVEED 235

Query: 497 AGWTLFSPD 505
             WT   PD
Sbjct: 236 KDWTFIFPD 244


>gi|85703576|ref|ZP_01034680.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
 gi|85672504|gb|EAQ27361.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
          Length = 1226

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 55/376 (14%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R +  V + I A  
Sbjct: 396 VTDAFLKAVKDDADWALI---------------------------NRVDGSVAKTIKARD 428

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +    +    P I + D  N        G +  SN C+E       ++TA CNL S
Sbjct: 429 LWEDVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGSNPCSEYMF---LDDTA-CNLAS 484

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  + + +FD D      R     L+  + +     ++  + ++  R +GLG     
Sbjct: 485 MNLLKFYVDGKFDADAYMHATRLWTVTLEISVTMAQFPSKEIAQLSYEFRTLGLGYANIG 544

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------ 712
             L  +   Y S E   +       ++  A + S E+A E GA++ +K            
Sbjct: 545 GLLMNMGFGYDSDEGRALCGALTAIMTGVAYATSAEMAAELGAFAGYKRNSKHMLRVIRN 604

Query: 713 ------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                 G+        +  + L  +   +  +   +   WDE  K  +  G RN+    I
Sbjct: 605 HRNAAYGATEGYEALAVKPVPLDHKNCPDARLVDLAMASWDEALKLGEKHGYRNAQSTVI 664

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI  +    +  I+P +  +  K    G  F ++N  +   L++   +  A I ++
Sbjct: 665 APTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALEKLG-YGPAQIEEI 723

Query: 825 KYH---DGSIGNIERI 837
             +    G+IGN   I
Sbjct: 724 VSYAVGHGTIGNAPGI 739



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +
Sbjct: 172 FQSGELTKSASAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 231

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  + G  GKS G++ FLK+ +  A A+  GG  R+ A     +  H D++EF++ +
Sbjct: 232 RGEGERLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEFINWK 290


>gi|144898200|emb|CAM75064.1| Ribonucleotide reductase large subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1208

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 25/302 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW ++    +    P I F    N        G +++SN C+E   
Sbjct: 424 RNSDKVKKNLKARDLWERIGEAAWACADPGIQFDTTINDWHTCPESGRINASNPCSEYMF 483

Query: 591 NSSSEETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL S+NLL+   A+  FD +      R    VL+  + +     EK  + 
Sbjct: 484 ---LDDTA-CNLASLNLLSFRRADASFDIEGFRHACRLWTMVLEISVLMAQFPSEKIAQL 539

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L    IPY S +   +       ++  +   S E+A E GA+ 
Sbjct: 540 SYEFRTLGLGFANIGGLLMADGIPYDSQKGRALTGAITALMTGESYVTSAEMAAELGAFP 599

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +                   G         I  + L A+   + ++   +RL WD    
Sbjct: 600 GYGANSAHMLRVIRNHRRAAYGLTSGYEGLDISPVPLDADNCPDSSLVAAARLAWDSALA 659

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 660 MGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMVPEA 719

Query: 810 LK 811
           L+
Sbjct: 720 LR 721



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 185 TRSKSSYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSKLRGEGER 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E F++ +
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFINWK 297


>gi|305682409|dbj|BAJ16292.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 100/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQTNEHFIPDVIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSSAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKAWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIHERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|82548289|gb|ABB82980.1| ribonucleotide reductase alpha subunit [uncultured organism
           HF70_19B12]
          Length = 652

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 6/107 (5%)

Query: 365 HPQLSSCFLTTVPDDLYG----IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           HPQ  +CF+ +V D L G    I G     A+L KY  G G++++ +RG G  + G  G 
Sbjct: 212 HPQPHACFIQSVSDSLVGGNDSIMGLWNREALLFKYGSGTGSNFSNIRGSGEPLSG-GGT 270

Query: 421 SQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           S G++ FLK+ +  A A+  GG  R+ A    L+  H D+EE++D +
Sbjct: 271 SSGLLSFLKIGDRAAGAIKSGGTTRRAAKMVTLDLDHPDIEEYIDWK 317



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 25/231 (10%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG-EIKVFRKISAV 543
           +P+ FM  +  +  W L+   E+                  +R  + G E    R + A 
Sbjct: 422 VPNSFMDALENDGIWNLYHRTEL------------------KRANEEGREPSPCRSMPAK 463

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW K+    +    P + F    N        G ++ SN C+E       ++TA CNL 
Sbjct: 464 ELWDKVAYTAWACADPGVQFDTTINEWHTCPEGGRINGSNPCSEYMF---LDDTA-CNLA 519

Query: 604 SINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SINLL +F     +FD      ++R     L+  + +     E+  + ++ +R +GLG  
Sbjct: 520 SINLLHYFDTGTQKFDVASFQHSVRLWTITLEVSVLMAQFPSEQIARKSYEYRTLGLGYC 579

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
              S L  + +PYA   A  +       +   + + S ELA   G +  ++
Sbjct: 580 NLGSLLMHMGLPYADDRAYAVCGALTSIMCGESYATSAELAGALGPFPKYE 630


>gi|298291309|ref|YP_003693248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
 gi|296927820|gb|ADH88629.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
          Length = 1241

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 152/387 (39%), Gaps = 52/387 (13%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+    + +  P I F    N        G + +SN C+E       
Sbjct: 426 KVTKTLKAAELWEKIGYAAWASADPGIQFHTTINDWHTSPAGGPIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           ++TA CNL S+NLL    A+  FD +      R    VL+  I +     ++  K ++ +
Sbjct: 483 DDTA-CNLASLNLLQFRNADGTFDVESYEHACRLWTVVLEISILMAQFPSKEIAKLSYDY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK- 712
           R +GLG       L    IPY S E           ++  + + S E+A+E G +  +K 
Sbjct: 542 RTLGLGYANIGGLLMTSGIPYDSEEGRAYCGALTAIMTGVSYATSAEMAKELGPFPEYKP 601

Query: 713 --------------GSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLPWDELK 750
                          +  + G +        P+D     A+V + + ++  ++  WD   
Sbjct: 602 NATHMLRVIRNHRRAAYGEHGGYEGLATNPVPLDH----AKVPEAILVDH-AKAAWDRAL 656

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
              +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V E
Sbjct: 657 ALGEEHGYRNAQTTLLAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPE 716

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
             +   + E+ I++++ +    G+I + P                  I  ++ R K  D 
Sbjct: 717 ALRTLGYSESQIAEIEVYAVGHGSITQAP-----------------AINHSTLRAKGFDD 759

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           A    +     S   + FI+ + W +G
Sbjct: 760 AMLAKIDAGAKSAFDVKFIFNR-WTLG 785



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)

Query: 349 FHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGND 403
           F+   +T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G++
Sbjct: 175 FYVDYATGKLTRSKTSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E +
Sbjct: 235 FSALRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETY 293

Query: 463 LDLR 466
           +D +
Sbjct: 294 VDWK 297


>gi|289578846|ref|YP_003477473.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
 gi|289528559|gb|ADD02911.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
          Length = 692

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++ + D I N  E+ +       
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYKQAVEIADEITNYVEKNLEG----- 58

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R
Sbjct: 59  ----IASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIR 96


>gi|86357383|ref|YP_469275.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86281485|gb|ABC90548.1| ribonucleotide-diphosphate reductase protein [Rhizobium etli CFN
           42]
          Length = 1271

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 41/337 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E   
Sbjct: 423 RKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF 482

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-----AVRVLDNVIDINCHTIEK 645
               ++TA CNL S+NLL      QF  DK    I       AVR+   V++++    + 
Sbjct: 483 ---LDDTA-CNLASLNLL------QFK-DKATKRINIGDYEHAVRLWTVVLEVSVMMAQF 531

Query: 646 AKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             K     ++ +R +GLG       L    IPY S EA  IA      ++    + S E+
Sbjct: 532 PSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEM 591

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G + +F                   G         I+ + L+     +  +   ++
Sbjct: 592 AAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSINPVALIHSENPDQDLAAHAK 651

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTV 801
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +
Sbjct: 652 SAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 711

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +N  +   L+    + E+ I++++ +    GN+ + P
Sbjct: 712 INRAVPEALRTLG-YSESQIAEIEAYAVGHGNLNQAP 747



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297


>gi|313898389|ref|ZP_07831926.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312956771|gb|EFR38402.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 792

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G ++ FD +KIS AI KAF AVE +     I   D++           ++H++ 
Sbjct: 3   QVIKRDGKISEFDIAKISNAIQKAFDAVERQYHPSII---DMLALRVTSDFEPKIRHDR- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S
Sbjct: 59  ---IQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKS 99


>gi|149913748|ref|ZP_01902280.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
 gi|149812032|gb|EDM71863.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
          Length = 1008

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 144/359 (40%), Gaps = 42/359 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R +  V + I A  LW ++    +    P I + D  N        G +  SN C+E  
Sbjct: 414 NRTDGGVAKTIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL  F N  FD +      R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASMNLLQFFHNGAFDAESYVHATRLWTVTLEISVMMAQFPSKEIAQL 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  + + Y S E   +       ++  + + S E+A E GA++
Sbjct: 530 SYEFRTLGLGYANIGGLLMNMGLGYDSDEGRAMCGALTALMTGVSYATSAEMAGELGAFA 589

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++                  G+        I  + L  +   +  +   +   WDE  +
Sbjct: 590 GYERNREHMLRVIRNHRNAAYGNSDGYEALAIKPLPLDQKNCPDARLVDLAMASWDEALR 649

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 650 LGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINHSVPAA 709

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           L++   +  A I ++  +    G+IGN   I           P++L+K+ A   +AF+I
Sbjct: 710 LEKLG-YGSAQIEEIVSYAVGHGTIGNAPGINHTSLVGHGFGPNELQKVDAALGSAFDI 767



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  
Sbjct: 178 TKSSSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAAGEK 237

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+EEF++ +
Sbjct: 238 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFINWK 290


>gi|305682401|dbj|BAJ16288.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 101/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|254486479|ref|ZP_05099684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
 gi|214043348|gb|EEB83986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
          Length = 1217

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +RG G  
Sbjct: 177 TRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRGAGEK 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 28/331 (8%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           DR   +V + I A  LW ++    +    P I + D  N        G +  SN C+E  
Sbjct: 413 DRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYM 472

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + 
Sbjct: 473 F---LDDTA-CNLASMNLLTFLEDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEIAQR 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G++ 
Sbjct: 529 SYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEIAGELGSFP 588

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +K                  G         +  + L      + A+   +   WDE  +
Sbjct: 589 GYKKNADHMLRVIRNHRNAAYGKADGYENLSVKPVPLDHANCPQQALIEVATSTWDEALR 648

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 649 LGEQNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAA 708

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           L++   +  A I ++  +    GSIGN   I
Sbjct: 709 LEKLG-YGSAQIEEIVAYAVGHGSIGNAPGI 738


>gi|119384125|ref|YP_915181.1| ribonucleotide-diphosphate reductase subunit alpha [Paracoccus
           denitrificans PD1222]
 gi|119373892|gb|ABL69485.1| ribonucleoside-diphosphate reductase class II [Paracoccus
           denitrificans PD1222]
          Length = 1205

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 150/382 (39%), Gaps = 42/382 (10%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + +SA  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 422 RTDGKVAKTVSARELWDQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL+ ++  +FD D      R     L+  + +     ++  + +
Sbjct: 482 ---LDDTA-CNLASMNLLSFWSGKEFDADGYVHASRLWTVTLEISVMMAQFPSKEIAQRS 537

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  + + S E+A E G +  
Sbjct: 538 YDFRTLGLGYANIGGLLMNMGLGYDSDEGRALCGALTAVMTGVSYATSAEMAAELGPFPG 597

Query: 711 F--------------KGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +              + + +  G +    +  + L      +  +   ++  WDE     
Sbjct: 598 YGKNAQHMLRVIRNHRAAAYGTGAYEGVNVRPVELDTANCPDPRLVALAQGAWDEALTLG 657

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+
Sbjct: 658 EAHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALE 717

Query: 812 QRDLWDEAMISDLKYHDG--SIGNIERI-----------PDDLKKIH---ATAFEID--- 852
                   +   + Y  G  S+GN   I           P +L+K+    A+AF+I    
Sbjct: 718 TLGYGSAQIEEIIAYAVGHASLGNCPGINHASLIGHGFGPRELEKVDAALASAFDIRFVF 777

Query: 853 PMWLIESASRRQKWIDQAQSLN 874
             W +  A  R+     A+ LN
Sbjct: 778 NQWTLGEAFCRETLGIPAERLN 799



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 188 DSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 248 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 297


>gi|306825286|ref|ZP_07458628.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432722|gb|EFM35696.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 288

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 54/302 (17%)

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +R    V D+   +   TI+      HT    GLG MG  S L    I Y SPE++E   
Sbjct: 2   VRALTFVTDSSHIVAVPTIDHGNSLAHT---FGLGAMGLHSYLAQQLIEYGSPESIEFTS 58

Query: 685 ESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG-VFPIDSIGLLAEVRDELA-MNRT 741
                +++  +  S  +A+ERG  + +F+ S +  G  F     G      D +  + + 
Sbjct: 59  IYFMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKD 118

Query: 742 SRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +P    W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +        
Sbjct: 119 VFIPSAADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRI-------- 170

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                      E +Q     E  I  + Y    + + E IP      + +A+++D   +I
Sbjct: 171 -----------EERQ-----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVI 208

Query: 858 ESASRRQKWIDQAQSLNLYL--DEPSG------------KKLDFIYRQAWLMGLKTTYYL 903
           +  +   + +DQ  SL L++  D P G            + L  +   A+  G+K+ YY+
Sbjct: 209 DVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYV 268

Query: 904 RS 905
           R+
Sbjct: 269 RT 270


>gi|146276981|ref|YP_001167140.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555222|gb|ABP69835.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 1239

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 143/382 (37%), Gaps = 53/382 (13%)

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  + D F++ V ++A W L                             R + KV
Sbjct: 418 QNSNNSVRVTDAFLRAVKEDADWALLR---------------------------RTDGKV 450

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW ++    +    P I F D  N        G +  SN C+E       ++
Sbjct: 451 AKTVKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMF---LDD 507

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TA CNL S+NLL  F   +FD D      R     L+  + +     ++  + +   R +
Sbjct: 508 TA-CNLASMNLLTFFEGGRFDADAYIHATRLWTLTLEVSVMMAQFPSKEIAQLSFDFRTL 566

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG       L  + + Y S E   +       ++  A + S E+A E GA++ ++ +  
Sbjct: 567 GLGYANIGGLLMNMGLGYDSKEGRALCGALSAIMTGVAYATSAEMAAELGAFAGYQRNAQ 626

Query: 717 D------------QGVFPIDSIGLLAEVRDELAMNRTSRL------PWDELKKRVKTIGM 758
                         G    +++  +A V  + A    +RL       WDE     +  G 
Sbjct: 627 HMLRVIRNHRAAAHGATSYEAVN-VAPVPLDAANCPDARLVSLAKSAWDEALALGEAHGY 685

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+    +
Sbjct: 686 RNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALETLG-Y 744

Query: 817 DEAMISDLKYHDGSIGNIERIP 838
             A IS +  +    G +   P
Sbjct: 745 SSAQISQIVAYAVGHGTLANCP 766



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 211 DSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 270

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 271 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 320


>gi|288817532|ref|YP_003431879.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786931|dbj|BAI68678.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751135|gb|ADO44618.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
          Length = 701

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD S+I RA+ KAF AV G+        Q I+  L E  VT++L   K  
Sbjct: 21  VVKRDGILVPFDRSRIQRAMFKAFKAV-GEFVE-----QSILDELVEDVVTKVLSLGKQR 74

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             VH+E+IQD VE +L+  G  K  + Y+LYR+ R ++R
Sbjct: 75  --VHVEEIQDLVEETLILHGFAKTAKAYILYRKRREELR 111


>gi|297616998|ref|YP_003702157.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144835|gb|ADI01592.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 671

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FDPSKI+ AI KA  AV G+   +S+        LT + V R+L     
Sbjct: 4   KIKKRDGREVPFDPSKITEAIFKAAQAVGGEDRQKSLE-------LTLE-VMRVLGQKYQ 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  +ED+QD VE  L++ GH K  + Y+LYR++R+  R A+S
Sbjct: 56  GEVFTVEDVQDIVEKVLIEHGHAKTAKAYILYRDQRTRYREAKS 99


>gi|305682407|dbj|BAJ16291.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 100/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQSNEHFIPDIIRFLDNVLEDFINN 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|154248593|ref|YP_001419551.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthobacter
           autotrophicus Py2]
 gi|154162678|gb|ABS69894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Xanthobacter autotrophicus Py2]
          Length = 1241

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 134/330 (40%), Gaps = 28/330 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW K+    +    P I F    N        G + +SN C+E   
Sbjct: 422 RTDGKVAKTVKARELWEKIGAAAWHCADPGIQFHTTVNDWHTCPAAGEIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL S+NLL    A  +FD +     +R    VL+  + +      +  + 
Sbjct: 482 ---LDDTA-CNLASLNLLQFRDAEKRFDVESYEHAVRLWTVVLEISVLMAQFPSRRIAEL 537

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++ +R +GLG       L    IPY SP+   I       ++  + + S E+A E G + 
Sbjct: 538 SYEYRTLGLGYANIGGLLMSSGIPYDSPQGRAIGGALSAIMTGVSYATSAEMASELGPFP 597

Query: 710 SFKGSLWDQGVFPI---------------DSIGLLAEVRDELAMNRT-----SRLPWDEL 749
           ++  +   Q +  +               + + +     D ++   T     +   WD+ 
Sbjct: 598 AYSANA--QSMLRVIRNHRRAAHGLKDGYEGLSIAPVPLDHVSCPDTRLVAHATAAWDKA 655

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
               +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 656 LALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 715

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           E  +   + EA I++++ +    G++ + P
Sbjct: 716 EALRTLGYSEAEIAEMEAYAVGHGSLAQAP 745



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 16/174 (9%)

Query: 299 QILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Q  YD  RY L +  +    PQ F   +     +    +      FY    S   + ST 
Sbjct: 134 QAFYDEHRYMLALQMAAPNSPQWFNTGLFWAYGIDGPGQG----HFYVDHESGELLAST- 188

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  
Sbjct: 189 ----SAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRGEGER 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E +++ +
Sbjct: 245 LSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYVNWK 297


>gi|163759498|ref|ZP_02166583.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283095|gb|EDQ33381.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 1263

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 150/359 (41%), Gaps = 36/359 (10%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW ++    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGKVMKTLKARDLWEQIGHAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFAN------NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
               ++TA CNL S+NLL  F +      N  DY+     +R    VL+  + +      
Sbjct: 482 ---LDDTA-CNLASLNLL-RFKDADTKRINIADYEH---AVRLWTLVLEVSVMMAQFPSR 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  + ++ +R +GLG       L    IPY S E   I       ++  + + S E+A E
Sbjct: 534 QIAELSYKYRTLGLGYANIGGLLMTTGIPYDSKEGRAICGALTAIMTGVSYATSAEIAGE 593

Query: 705 RGAYSSFK---------------GSLWDQGVFPIDSIGLLAEVRDELA---MNRTSRLPW 746
            GA+  +K                +  +   +   S+  +A + DE     + + +   W
Sbjct: 594 LGAFPGYKDNKTNMLRVIRNHRLAAHGEDSGYEGLSVNPVALIHDECPDQDLIKHATAAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNS 804
           D+  +     G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N+
Sbjct: 654 DKALELGTKNGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINN 713

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASR 862
            +   L+    + EA +++++ +    GNI + P  +   + A  F  + +  I +A++
Sbjct: 714 AVPEALRTLG-YSEAQLAEIEAYAVGHGNINQAPGVNPGSLKAKGFTDEKIEAINAATK 771



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQSVEDDLVNDNGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E++++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEDYINWK 297


>gi|305682411|dbj|BAJ16293.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|223985352|ref|ZP_03635422.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
 gi|223962678|gb|EEF67120.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
          Length = 399

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +T FD SKIS AI KAF A + +  S  I       ++    VT   +    
Sbjct: 3   KVVKRDGMITEFDISKISLAITKAFEAQQKQYHSSVI-------DMLALRVTADFEGKIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S
Sbjct: 56  NDLIQVEDIQDSVESILIQSGYSDVAKAYILYRKQREKIRNMKS 99


>gi|160878693|ref|YP_001557661.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160427359|gb|ABX40922.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 800

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  SKIS AI KAF       A++ +  +DII NL    VT   Q   
Sbjct: 2   IKVVKRDGEIAEFALSKISSAIAKAF------NATQKLYNEDII-NLLSLRVTSDFQTKL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +EDIQD VE  L QSG+  + + Y+LYR+ R  +R  +S
Sbjct: 55  KDSTVTVEDIQDSVEHVLEQSGYTDVAKAYILYRKNREKIRNMKS 99


>gi|213417043|ref|ZP_03350187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 142

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L
Sbjct: 1   FYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGL 60

Query: 511 HDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           +D +     EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D C
Sbjct: 61  YDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHC 116

Query: 568 NIRSP-QQHVGVVHSSNLCTEITL 590
           N  SP    V  V  SNLC EI L
Sbjct: 117 NTHSPFDPVVAPVRQSNLCLEIAL 140


>gi|126668921|ref|ZP_01739863.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
 gi|126626617|gb|EAZ97272.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
          Length = 1087

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 24/285 (8%)

Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHF--MCSTPTLFNSGTR-HPQLSSCFLT 374
           A + RVA   AL E E K+ RA  + +   +     + +   + N+G + H   +S    
Sbjct: 42  ATYERVAQ--ALSEVENKDLRAKHYKDFAWALKHGAIPAGRIISNAGAQSHKPATSTINC 99

Query: 375 TVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           TV     D +  I G   E  +  K   G+G +++ +R  GA++ G    + G + F+ +
Sbjct: 100 TVSGNINDSMNDILGKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDI 159

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +     V+  G R+GA  A  +  H D+ +F+  ++  G    R    N +  I + F+
Sbjct: 160 FDRMCFTVSSAGGRRGAQMATFDIHHPDIIDFIQAKREDG----RLRQFNLSLLITEDFI 215

Query: 491 KRVTQNAGWTLFSP-------DEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKI 540
             V  NA W+L  P       +E  DL D      ++F +  +       +   +++R +
Sbjct: 216 NAVRDNADWSLSFPVTDKEVEEEDLDLTDTAKFVYRDFPVVKDYVMNAEGKVACRIYRTL 275

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            A  +W  ++T  ++   P     D  N  +       + ++N C
Sbjct: 276 KAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPC 320



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 44/342 (12%)

Query: 600  CNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL   F ++       F+Y+K    +    R+LDNV++IN   + + +      
Sbjct: 706  CLLGSVNL-TMFVDDPFTDKASFNYEKYKKVVGIFTRMLDNVVEINGLPLAQQRHEITYK 764

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY----S 709
            R  G+G++G  S L +L +PY S E+V   ++ +  ++      S+ L +E+GA      
Sbjct: 765  RRHGMGILGLGSTLAMLRMPYGSEESVVFTEDVVREMAVEGWRQSLALGKEKGAAPIMDD 824

Query: 710  SFKGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRN 760
             F+ +    G  P    D   L  +++  +   + SR          EL  ++   G R 
Sbjct: 825  EFEITPKLLGKCPQLTADGYNLGDKLKGRVLHAKYSRYMQRIAEVEPELVAQLAEKGGRF 884

Query: 761  SNCMAIAPTATI----ANICGVSQSIDPSYQNLYVKSNM-SGDFT--VVNSFLVNELKQR 813
            ++  +IAPT TI    AN    S  I+PS+ + Y ++ +  G  T   V+ F    L  R
Sbjct: 885  THHTSIAPTGTISLSLAN--NASNGIEPSFSHHYARNIIREGRKTKEKVDVFSFELLAYR 942

Query: 814  DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQ 871
             L +      + + D +    +++PD       T+ ++ P   ++  +  Q WID   ++
Sbjct: 943  HLSNPGA---MPFSDDA---DKKLPD----YFTTSDDVTPAQHVDIQAAAQLWIDSSISK 992

Query: 872  SLNLYLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV 911
            + N+  D P  K    IY  A+  GLK  TT+   + +   V
Sbjct: 993  TANVPTDFPY-KNFKDIYLYAFDKGLKGCTTFRFNAEAFQGV 1033


>gi|163742806|ref|ZP_02150191.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161384061|gb|EDQ08445.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 1214

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 178 TKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEP 237

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+D +
Sbjct: 238 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIDWK 290



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 143/364 (39%), Gaps = 52/364 (14%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N        G +  SN C+E  
Sbjct: 414 NRVDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    +  F  +      R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQR 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G ++
Sbjct: 530 SYDFRTLGLGYANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMASELGPFA 589

Query: 710 SFKGSLWD-------------------QGV----FPIDSIGLLAEVRDELAMNRTSRLPW 746
            ++ +  D                   +G+     P+DS         ELAM+      W
Sbjct: 590 RYEQNASDMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMSS-----W 644

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNS 804
           DE  +  +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N 
Sbjct: 645 DEALELGERHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 704

Query: 805 FL---VNELKQRDLWDEAMISDLKYHDGSIGNIERI-----------PDDLKKIHA---T 847
            +   ++ L       E ++S    H G+IGN   I           P +L K+ A   +
Sbjct: 705 SVPAALDGLGYSPAQIEEIVSYAVGH-GTIGNAPGINHTSLAGHGFGPAELAKVDAALES 763

Query: 848 AFEI 851
           AF+I
Sbjct: 764 AFDI 767


>gi|305682415|dbj|BAJ16295.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 100/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|163736546|ref|ZP_02143965.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
 gi|161390416|gb|EDQ14766.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
          Length = 1214

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 178 TKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEP 237

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+D +
Sbjct: 238 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIDWK 290



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 142/364 (39%), Gaps = 52/364 (14%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N        G +  SN C+E  
Sbjct: 414 NRVDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    +  F  +      R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQR 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G ++
Sbjct: 530 SYDFRTLGLGYANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMASELGPFA 589

Query: 710 SFKGSLWD-------------------QGV----FPIDSIGLLAEVRDELAMNRTSRLPW 746
             + +  D                   +G+     P+DS         ELAM+      W
Sbjct: 590 RHEQNASDMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMSS-----W 644

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNS 804
           DE  +  +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N 
Sbjct: 645 DEALELGERHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 704

Query: 805 FL---VNELKQRDLWDEAMISDLKYHDGSIGNIERI-----------PDDLKKIHA---T 847
            +   ++ L       E ++S    H G+IGN   I           P +L K+ A   +
Sbjct: 705 SVPAALDGLGYSPAQIEEIVSYAVGH-GTIGNAPGINHTSLAGHGFGPAELAKVDAALES 763

Query: 848 AFEI 851
           AF+I
Sbjct: 764 AFDI 767


>gi|297545066|ref|YP_003677368.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842841|gb|ADH61357.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 692

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD SKI  AI KAF AV      +++ + D + N  E+ +        
Sbjct: 5   MKVIKRNGKEVEFDKSKIVNAIYKAFKAVGEGEYKQAVEIADEVTNYVEKNLEG------ 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  +E IQD VE  L++ GH K  + Y+LYR++  D+R
Sbjct: 59  ---IASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIR 96


>gi|225569137|ref|ZP_03778162.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
 gi|225161936|gb|EEG74555.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
          Length = 788

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD +KIS AI KAF A E +        QDII  L  +         K+
Sbjct: 3   QVTKRDGQIAKFDITKISEAISKAFAAQEKE------YNQDIIDLLALKVTADFEPKIKN 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +L V +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S
Sbjct: 57  SL-VQVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNS 99


>gi|309775960|ref|ZP_07670952.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916242|gb|EFP61990.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 792

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G ++ FD +KIS AI KAF AVE        +    I ++    VT   +    
Sbjct: 3   QVIKRDGKISEFDIAKISNAITKAFEAVER-------QYHPSIIDMLALRVTSDFEPKIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S
Sbjct: 56  NDRIQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKS 99


>gi|305682405|dbj|BAJ16290.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  +      TAVC L S+NL  +F   Q +   +   I+    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIKFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                          D    N   R  +            
Sbjct: 120 VVLAKERGA------------------------CIDAQKCNIQERFSYK----------- 144

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                 AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 145 -----TAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|167947198|ref|ZP_02534272.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 72

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 8/79 (10%)

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           + EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT+VEK+T     G +N +    P  +  
Sbjct: 1   MAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATAVEKTTASS-SGDVNRLGDGAPAEA-- 57

Query: 937 SLGIPSSCTS-DTECEVCQ 954
               P +C+  D +CE CQ
Sbjct: 58  ----PKACSILDPDCEACQ 72


>gi|61743911|ref|YP_214057.2| Homolog of the large subunit of ribonucleotide reductase [Murid
           herpesvirus 1]
          Length = 912

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 148/361 (40%), Gaps = 33/361 (9%)

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WTLFSPDEV 507
           Y + W +D  +      + G  R     M  A   P +F  R   ++G   W +F+  E 
Sbjct: 413 YFDIWSVDALKIFSFILDVG--REYEGLMAFAVNTPRIFWDRYLDSSGDKMWLMFARREA 470

Query: 508 SDLHDLYGKEFEIAYENYERQADRG------------EIKVFRKISAVALWRKMLTMLFE 555
           + L  L  K F   YE  ER                 +  V R  +AV     + +M+ E
Sbjct: 471 AALCGLDLKSFRNVYEKMERDGRSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSMIPE 530

Query: 556 T-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
             G P +    P         VG      LC  +  N   E  AV    S++++      
Sbjct: 531 NIGRPAVC--GPGVSVVSGGFVGCTPIHELCINLE-NCVLEGAAV--ESSVDVVLGL-GC 584

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L   
Sbjct: 585 RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQK 644

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLAE 731
           +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D       
Sbjct: 645 FADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPDLFD---- 699

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N+++
Sbjct: 700 -DDERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFL 758

Query: 792 K 792
           +
Sbjct: 759 E 759


>gi|86138859|ref|ZP_01057431.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
 gi|85824506|gb|EAQ44709.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
          Length = 1215

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 36/300 (12%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N      + G +  SN C+E  
Sbjct: 414 NRTDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPNDGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL  + + +F  +      R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASLNLLTFYKDGKFQAEDYMHACRLWTVTLEISVTMAQFPSKEIAQR 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  A + S E+A E GA++
Sbjct: 530 SYDFRTLGLGYANIGGLLMNMGYGYDSEEGRALCGSLTALMTGVAYATSAEMASELGAFA 589

Query: 710 SF--------------------KGSLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLP 745
            +                    K + + +G+     P+D  G       +LAM       
Sbjct: 590 GYAKNADAMLKVIRNHRTAAMGKATGY-EGLSVPPVPLDIAGCPDARLADLAMG-----A 643

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           WDE  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 644 WDEALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 703



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 182 SSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEALSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIQWK 290


>gi|76664965|emb|CAJ17922.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 222

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 6/190 (3%)

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    N  + + +  T+  A+ V+++V    N   +    K+N  +R++G G+MG
Sbjct: 8   SCNLSSGHMENMINNNTIKETVFMAMEVMNSVSTKTNIDYVPAVAKANRLNRSVGFGIMG 67

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF 721
             S L   +I +   E  ++ D     I+++++  S   A++ G  +  F+ S +  G +
Sbjct: 68  HHSFLVKNYIDFGGEENKDLLDVFFNAINYYSLLHSCNKARQTGQKFYRFQNSHYADGSY 127

Query: 722 PIDSIGLLAEVRDELAMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             +   +L + +    +     LP    W +L+K VK  G+ NS+ +A+AP  +I  I G
Sbjct: 128 FRNRGEILPKTQKIKKIFSKISLPSQKDWQQLEKDVKQYGLFNSHRLAVAPNGSIGYIMG 187

Query: 778 VSQSIDPSYQ 787
            + S+ P  Q
Sbjct: 188 TTPSLTPVKQ 197


>gi|222085732|ref|YP_002544262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
 gi|221723180|gb|ACM26336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
          Length = 1264

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 132/330 (40%), Gaps = 27/330 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + K+ + + A  LW  +    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGKIMKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S+NL+     A  + +       +R    VL+  + +      +  +
Sbjct: 482 ---LDDTA-CNLASLNLMTFKDAATKRINIADYEHAVRLWTVVLEVSVMMAQFPSRRIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++ +R +GLG       L    IPY S EA  IA      ++  + + S E+A E G +
Sbjct: 538 LSYEYRTLGLGYANIGGLLMSSGIPYDSDEARAIAGSLTAIMTGISYATSAEMASELGTF 597

Query: 709 SSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             FK                  G         ++ + L+     +  +   ++  WD+  
Sbjct: 598 PMFKPNRENMLRVIRNHRRAAYGETSGYEGLAVNPVALIHSENPDQDLVAHAKAAWDKAL 657

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVN 808
              +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +  
Sbjct: 658 ALGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPE 717

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            L+    + E+ +++++ +    GN+ + P
Sbjct: 718 ALRALG-YSESQLAEIEAYAVGHGNLNQAP 746



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297


>gi|328543987|ref|YP_004304096.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326413730|gb|ADZ70793.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 1229

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 136/333 (40%), Gaps = 34/333 (10%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW ++    + +  P I +    N        G + +SN C+E   
Sbjct: 422 RRDGKVMKTIKARELWEQIGYAAWASADPGIQYHTTINDWHTCPASGEIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL S+NLL    A+  FD +      R    VL+  + +      +  + 
Sbjct: 482 ---LDDTA-CNLASLNLLQFRRADRSFDVEAYEHATRLWTIVLEISVLMAQFPSREIAEL 537

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L    IPY S E   I       ++  A + S E+A E GA+ 
Sbjct: 538 SYRFRTLGLGYANIGGLLMTSGIPYDSAEGRAICGALTAIMTGVAYATSAEMAGELGAFP 597

Query: 710 SF--------------KGSLWDQ---------GVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            +              + + + +            P+D     A   D++ + R +R  W
Sbjct: 598 GYAENAEHMLRVMRNHRRAAYGEVDGYEKLHTNPVPLDH----ASCPDKVLIER-ARAAW 652

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D   +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 653 DRALELGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 712

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            V E  +   + E+ I++++ +    G+I++ P
Sbjct: 713 AVPEALRVLGYSESQIAEIEAYAVGHGSIDQSP 745



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E +++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIESYINWK 297


>gi|150396451|ref|YP_001326918.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           medicae WSM419]
 gi|150027966|gb|ABR60083.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium medicae WSM419]
          Length = 1263

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 33/333 (9%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGRVMKTLKARDLWESISHAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S+NL+     AN + +       +R    VL+  + +      +  +
Sbjct: 482 ---LDDTA-CNLASLNLMQFKDAANKRINIGDYEHAVRLWTVVLEVSVMMAQFPSREIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++ +R +GLG       L    IPY SPE   IA      ++  A + S E++ + G +
Sbjct: 538 LSYAYRTLGLGYANIGGLLMSSGIPYDSPEGRAIAGALTAIMTGVAYATSAEISAKLGPF 597

Query: 709 SSF---------------KGSLWDQGVFPIDSIGLLAEV------RDELAMNRTSRLPWD 747
             F               + +  +   +   S+  +A V      +D +A  +++   WD
Sbjct: 598 PGFAPNRDNMLRVMRNHRRAAYGETAGYEGLSVNPVALVHGDCPDQDLIAHAKSA---WD 654

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  
Sbjct: 655 QAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 714

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +   L+    + E+ I++++ +    GN+ + P
Sbjct: 715 VPEALRTLG-YSESQIAEMEAYAVGHGNLNQAP 746



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYVRAEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297


>gi|126735671|ref|ZP_01751416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
 gi|126714858|gb|EBA11724.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
          Length = 1218

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 181 SSYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGDGEALSG- 239

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF++ +
Sbjct: 240 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWK 289



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 138/379 (36%), Gaps = 62/379 (16%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R   +V + I A  
Sbjct: 395 VTDAFLKAVEDDADWKLI---------------------------NRRNGEVAKIIKARE 427

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW ++    +    P I + D  N        G +  SN C+E       ++TA CNL S
Sbjct: 428 LWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGSNPCSEYMF---LDDTA-CNLAS 483

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  + +  F  +      R     L+  + +     ++  + ++  R +GLG     
Sbjct: 484 MNLLTFYKDGTFQAEDYMHATRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLGYANIG 543

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---------- 714
             L  +   Y S E   +       +S  + + S E+A E GA+  +K +          
Sbjct: 544 GLLMNMGFGYDSDEGRAMGAALTAIMSGVSYATSAEMAGELGAFPGYKKNSKHMLRVIKN 603

Query: 715 -------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                          D    P+D      +   ELA+       WDE  K  K  G RN+
Sbjct: 604 HRQAALGKADGYDKLDVKPVPLDHANCPDQRLIELAVGS-----WDEALKLGKKHGYRNA 658

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEA 819
               IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L++   +  A
Sbjct: 659 QVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALEKLG-YGSA 717

Query: 820 MISDLKYHDGSIGNIERIP 838
            I ++  +    G+I + P
Sbjct: 718 QIEEIIAYAVGHGSIGQAP 736


>gi|296444836|ref|ZP_06886799.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
 gi|296257784|gb|EFH04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
          Length = 1207

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 142/354 (40%), Gaps = 38/354 (10%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW ++    + +  P I F    N        G + +SN C+E       
Sbjct: 426 KVSKTLKARELWERIGYAAWASADPGIQFHTTINDWHTCPAGGPIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           ++TA CNL S+NLL  F N++   FD D      R    VL+  + +      +  + ++
Sbjct: 483 DDTA-CNLASLNLL-QFRNDETKRFDVDSYEHAARLWTVVLEVSVLMAQFPSREIAQLSY 540

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R +GLG       L    I Y S     +       ++  A  AS E+A+ERGA+  F
Sbjct: 541 DYRTLGLGYANVGGLLMSCGIAYDSEAGRALCGALSAIMTGVAYRASAEMAKERGAFDCF 600

Query: 712 ---------------KGSLWDQGVF--------PIDSIGLLAEVRDELAMNRTSRLPWDE 748
                          + +   +  +        P+D     A   D+  + R  R  WDE
Sbjct: 601 PQNREAMLRVIRNHRRAAHGQRAGYEGLSMTPVPLDH----AACPDQTLIARAMR-AWDE 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALSLGEQYGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYLKIVNRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            E  +   + EA I++++ +     ++   P  +   + A  F  + + ++E A
Sbjct: 716 PEALRALGYREAEIAEIEAYAVGHASLSNAPAVNTTSLRARGFTEEKIEVVEKA 769



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    + G    S
Sbjct: 193 HPQPHACFIQSVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEKEKLSGGGSSS 252

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAV 448
             ++ FLK+ +  A A+  GG  + A 
Sbjct: 253 G-LMSFLKIGDRAAGAIKSGGTTRRAA 278


>gi|255652452|ref|ZP_05399354.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 741

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 7/107 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  FD +KI  AI K+F+++  KG S +   +  +  L  + +      NK
Sbjct: 2   LNVIKRDGRIVPFDENKIIDAIEKSFLSLRNKGKSEAFDRE--LATLIAKKIK-----NK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
               +HIEDIQD +E SLM S    + +EY+ YRE+R+  R  ++++
Sbjct: 55  PCEKMHIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRKTYN 101


>gi|222148917|ref|YP_002549874.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           vitis S4]
 gi|221735903|gb|ACM36866.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           vitis S4]
          Length = 1256

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYIDWK 297



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 31/332 (9%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW K+    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RRDGRVMKTLKARDLWEKISYAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
               ++TA CNL S+NLL  F +    + D       +R    VL+  + +      +  
Sbjct: 482 ---LDDTA-CNLASLNLL-QFKDADTKKIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIA 536

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++ +R +GLG       L    IPY S E   I       ++  + + S E+A E G 
Sbjct: 537 ELSYEYRTLGLGYANIGGLLMSTGIPYDSAEGRAICGALSAIMTGVSYATSAEIASELGP 596

Query: 708 YSSFKGS-----------------LWD--QGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +  +  +                 L D  +G+  +D + L+     + A+   ++  WD+
Sbjct: 597 FPGYAPNRDNMLRVIRNHRRAAHGLSDGYEGL-AVDPVPLVHAECSDPALIAHAKAAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFL 806
             +  +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +
Sbjct: 656 ALELGEQHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
              L+    + E+ +++++ +    GN+ + P
Sbjct: 716 PEALRTLG-YTESQLAEIEAYAVGHGNLNQAP 746


>gi|116330897|ref|YP_800615.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124586|gb|ABJ75857.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 1196

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGENEPLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+E F+D +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWK 297



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 23/225 (10%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM  V Q+  W L+               F    E  + +  +   K  + + A  LW K
Sbjct: 405 FMAAVEQDQPWNLY---------------FRTEKEKAKFEGRKA--KPSQTLRARELWEK 447

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607
           +    + +  P   +    N        G +++SN C+E        +   CNL S NL 
Sbjct: 448 ISYAAWASADPGTQYHTTINEWHTCPEDGSINASNPCSEYMF----LDNTACNLASANLQ 503

Query: 608 -LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
              +     FD +      R    +L+  + +     ++  + ++  R +GLG     S 
Sbjct: 504 KFVNLETLNFDVEGFRYLCRLWTIILEISVTMAQFPSKEIAELSYKFRTLGLGYANLGSV 563

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
           L +L IPY S EA+ I       +   A + S E+A+E+G ++ +
Sbjct: 564 LMILGIPYDSQEAMAITGAISSIMHMTAYATSAEMAKEQGPFTGY 608


>gi|116328172|ref|YP_797892.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120916|gb|ABJ78959.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 1196

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGENEPLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+E F+D +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWK 297



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 23/225 (10%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM  V Q+  W L+               F    E  + +  +   K  + + A  LW K
Sbjct: 405 FMAAVEQDQPWNLY---------------FRTEKEKAKFEGRKA--KPSQTLRARELWEK 447

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607
           +    + +  P   +    N        G +++SN C+E        +   CNL S NL 
Sbjct: 448 ISYAAWASADPGTQYHTTINEWHTCPEDGSINASNPCSEYMF----LDNTACNLASANLQ 503

Query: 608 -LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
              +     FD +      R    +L+  + +     ++  + ++  R +GLG     S 
Sbjct: 504 KFVNLETLNFDVEGFRYLCRLWTIILEISVTMAQFPSKEIAELSYKFRTLGLGYANLGSV 563

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
           L +L IPY S EA+ I       +   A + S E+A+E+G ++ +
Sbjct: 564 LMILGIPYDSQEAMAITGAISSIMHMTAYATSAEMAKEQGPFTGY 608


>gi|157676150|emb|CAP08092.1| M45 protein [Murine cytomegalovirus (strain K181)]
          Length = 1174

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 35/362 (9%)

Query: 451  YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WTLFSPDEV 507
            Y + W +D  +      + G  R     M  A   P +F  R   ++G   W +F+  E 
Sbjct: 675  YFDIWSVDALKIFSFILDVG--REYEGLMAFAVNTPRIFWDRYLDSSGDKMWLMFARREA 732

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKV-------------FRKISAVALWRKMLTMLF 554
            + L  L  K F   YE  ER   R  I V              R  +AV     + +M+ 
Sbjct: 733  AALCGLDLKSFRNVYEKMERDG-RSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSMIP 791

Query: 555  ET-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            E  G P +    P         VG      LC  +  N   E  AV    S++++     
Sbjct: 792  ENIGRPAVC--GPGVSVVSGGFVGCTPIHELCINLE-NCVLEGAAV--ESSVDVVLGLGC 846

Query: 614  NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L  
Sbjct: 847  -RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQ 905

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730
             +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D   L  
Sbjct: 906  KFADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPD---LFD 961

Query: 731  EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +  DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N++
Sbjct: 962  D--DERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVF 1019

Query: 791  VK 792
            ++
Sbjct: 1020 LE 1021


>gi|89054963|ref|YP_510414.1| ribonucleotide-diphosphate reductase subunit alpha [Jannaschia sp.
           CCS1]
 gi|88864512|gb|ABD55389.1| ribonucleoside-diphosphate reductase class II [Jannaschia sp. CCS1]
          Length = 1236

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 34/299 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + I A  LW K+    +    P I + D  N        G +  SN C+E  
Sbjct: 432 NRRDGKVSKTIKARDLWEKVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYM 491

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL  +A   FD +      R     L+  + +     ++  + 
Sbjct: 492 F---LDDTA-CNLASMNLLTFYAGGTFDAESYMHACRLWTLTLEISVMMAQFPSKEIAQR 547

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L      Y S E   +       ++  A + S E+A E G ++
Sbjct: 548 SYDFRTLGLGFANIGGLLMNTGHSYDSAEGRALCGSLTAIMTGVAYATSAEIASELGPFA 607

Query: 710 SF--------------KGSLWDQ-------GVFPI--DSIGLLAEVRDELAMNRTSRLPW 746
            F              + + + +        V P+  D I    +   ELA     +  W
Sbjct: 608 GFAKNREHMLRVMRNHRAAAYGKTDGYEEVNVNPVALDHINCPDQTLVELA-----KQAW 662

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           DE     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 663 DEALTLGEAHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 721



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGVKDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 248 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIEWK 297


>gi|254437550|ref|ZP_05051044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198252996|gb|EDY77310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 1223

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G +
Sbjct: 177 TASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRASGEN 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF++ +
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWK 289



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 124/344 (36%), Gaps = 61/344 (17%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R   +V + I A  
Sbjct: 395 VTDAFLKAVEDDANWKLI---------------------------NRKNGEVAKVIKARD 427

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW ++    +    P I + D  N        G +  SN C+E       ++TA CNL S
Sbjct: 428 LWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF---LDDTA-CNLAS 483

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  F +  F  +      R     L+  + +     ++  + +   R +GLG     
Sbjct: 484 MNLLKFFKDGAFQVEDYMHASRLWTVTLEISVMMAQFPSKEIAQRSFDFRTLGLGYANIG 543

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---------- 714
             L  +   Y S E   +A      ++  + + S E+A E GA+S +K +          
Sbjct: 544 GLLMNMGFGYDSDEGRSMAGALTAIMTGVSYATSAEIAGELGAFSGYKRNKEHMLKVIRN 603

Query: 715 -------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                          D    P+D          ++AM+      WDE  +  +  G RN+
Sbjct: 604 HRNAAYGASDGYEKLDIKPVPLDHANCPEARLIDIAMST-----WDEALRLGEKHGYRNA 658

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
               IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 659 QVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 702


>gi|323141415|ref|ZP_08076306.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414164|gb|EFY04992.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 708

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI  AI KA  AVE +      ++Q+I  ++  +   RLL    
Sbjct: 1   MKVIKRDGTTVDFDAAKIVVAIQKANAAVEPEFRIEEDKIQEIADSVQSRNRMRLL---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD VE SLM +G  ++ ++Y++YR +R+ VR A +   S
Sbjct: 57  ------VEDIQDMVEHSLMDAGKFELAKQYIIYRYKRALVRKANTTDDS 99


>gi|218281041|ref|ZP_03487617.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
 gi|218217690|gb|EEC91228.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
          Length = 652

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FDPSKI  AI KAF        S  +   D I NL     T   Q   
Sbjct: 2   IEVEKRDGSIVDFDPSKIFSAISKAF-------DSLHMEKDDAIINLLVLRATADFQAKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E IQD VE +L +SG++ + + Y+LYR++R +VR  QS
Sbjct: 55  KENRISVEMIQDSVEKTLSESGYYPVAKTYILYRKQRENVRKIQS 99


>gi|83942582|ref|ZP_00955043.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
 gi|83846675|gb|EAP84551.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
          Length = 1217

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  
Sbjct: 177 TRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAAGEK 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 137/359 (38%), Gaps = 42/359 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           DR   +V + I A  LW ++    +    P I + D  N        G +  SN C+E  
Sbjct: 413 DRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYM 472

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + 
Sbjct: 473 F---LDDTA-CNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEIAQR 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY- 708
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+ 
Sbjct: 529 SYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMAGELGAFP 588

Query: 709 -----------------SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                            ++  G         +  + L      +  +   +   WDE  +
Sbjct: 589 GHAKNADHMLRVIRNHRNAAHGKTDGYEALSVKPVPLDHANCPQANLIDIATATWDEALR 648

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 649 LGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAA 708

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHAT---AFEI 851
           L++   +  A I ++  +    G+IGN   I           P++L KI A    AF+I
Sbjct: 709 LEKLG-YGSAQIEEIVGYAVGHGTIGNAPAINHTTLVGHGFGPNELAKIDAALAQAFDI 766


>gi|115343624|gb|ABI94733.1| pM45 [Murid herpesvirus 1]
 gi|289547264|gb|ADD10427.1| hypothetical protein [Murid herpesvirus 1]
          Length = 1174

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 35/362 (9%)

Query: 451  YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WTLFSPDEV 507
            Y + W +D  +      + G  R     M  A   P +F  R   ++G   W +F+  E 
Sbjct: 675  YFDIWSVDALKIFSFILDVG--REYEGLMAFAVNTPRIFWDRYLDSSGDKMWLMFARREA 732

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKV-------------FRKISAVALWRKMLTMLF 554
            + L  L  K F   YE  ER   R  I V              R  +AV     + +M+ 
Sbjct: 733  AALCGLDLKSFRNVYEKMERDG-RSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSMIP 791

Query: 555  ET-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            E  G P +    P         VG      LC  +  N   E  AV    S++++     
Sbjct: 792  ENIGRPAVC--GPGVSVVSGGFVGCTPIHELCINLE-NCVLEGAAV--ESSVDVVLGLGC 846

Query: 614  NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L  
Sbjct: 847  -RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQ 905

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730
             +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D   L  
Sbjct: 906  KFADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPD---LFD 961

Query: 731  EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +  DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N++
Sbjct: 962  D--DERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVF 1019

Query: 791  VK 792
            ++
Sbjct: 1020 LE 1021


>gi|83953823|ref|ZP_00962544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
 gi|83841768|gb|EAP80937.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
          Length = 1217

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  
Sbjct: 177 TRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAAGEK 236

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 237 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 138/359 (38%), Gaps = 42/359 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           DR   +V + I A  LW ++    +    P I + D  N        G +  SN C+E  
Sbjct: 413 DRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYM 472

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + 
Sbjct: 473 F---LDDTA-CNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEIAQR 528

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY- 708
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+ 
Sbjct: 529 SYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMAGELGAFP 588

Query: 709 -----------------SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                            ++  G+        +  + L      +  +   +   WDE  +
Sbjct: 589 GHAKNADHMLRVIRNHRNAAHGNTDGYEALSVKPVPLDHANCPQANLIDIATATWDEALR 648

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 649 LGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAA 708

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHAT---AFEI 851
           L++   +  A I ++  +    G+IGN   I           P++L KI A    AF+I
Sbjct: 709 LEKLG-YGSAQIEEIVGYAVGHGTIGNAPAINHTTLVGHGFGPNELAKIDAALAQAFDI 766


>gi|307265926|ref|ZP_07547475.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919095|gb|EFN49320.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 692

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI+ AI KAF AV      +++++ D + +  E       +H 
Sbjct: 4   AMKVIKRNGNEVEFDKSKIANAIYKAFKAVGEGEYEQAVQIADEVTDYVE-------KHF 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   I  +E IQD VE  L++ GH K  + Y+LYR++  D+R
Sbjct: 57  EG--IATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIR 96


>gi|330905569|gb|EGH36141.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 34

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 7/41 (17%)

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           GV+P       TAVAVNQGGKRKGAVCAYLETWH+D+EEF+
Sbjct: 1   GVVP-------TAVAVNQGGKRKGAVCAYLETWHMDIEEFI 34


>gi|229084443|ref|ZP_04216722.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698871|gb|EEL51577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 281

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 42/284 (14%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V D  +  N  T++KA    H   ++GLG M     L    I Y S EA E        +
Sbjct: 20  VSDMTVIPNAPTVKKANDELH---SVGLGAMNLHGYLSKNKIAYESAEAKEFVRTFFMML 76

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+ +A+E+G  +  F  S +  G +       D   +  +V+     +   ++
Sbjct: 77  NYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIYIPTK 136

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+ P                   
Sbjct: 137 EDWTSLKEEVQKNGLYNSYRLAIAPTQSISYVQNATSSVMP------------------- 177

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +V++++ R   +      + Y          +  D    + ++++++   LI+  +  
Sbjct: 178 --IVSQIESRTYANATTYYPMPY----------LSKDTFWYYKSSYDMNQFKLIDLIAEI 225

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R
Sbjct: 226 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269


>gi|259418707|ref|ZP_05742624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
 gi|259344929|gb|EEW56783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
          Length = 1055

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           NS   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G
Sbjct: 91  NSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEKLSG 150

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 151 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWK 200



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 139/359 (38%), Gaps = 42/359 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N        G +  SN C+E  
Sbjct: 324 NRTDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYM 383

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL  +    F  +      R     L+  + +     ++  + 
Sbjct: 384 F---LDDTA-CNLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFPSKEIAQL 439

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  A + S E+A E G ++
Sbjct: 440 SYDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIASELGPFA 499

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++                  G+        +  + L  +   +  +   +   WDE   
Sbjct: 500 GYERNADHMLRVMRNHRNAAYGATEGYDALTVKPVPLDLQNCPDARLTELAMSAWDEAVN 559

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + 
Sbjct: 560 LGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSA 619

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           L+    +  A I ++  +    GSIGN   I           P++L K+ A   +AF+I
Sbjct: 620 LEGLG-YSSAQIEEIVSYAVGHGSIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDI 677


>gi|118590077|ref|ZP_01547481.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
 gi|118437574|gb|EAV44211.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
          Length = 1227

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHVRAEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYINWK 297



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 134/324 (41%), Gaps = 26/324 (8%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW ++    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VLKTVKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +TA CNL S+NL+     +  FD D     +R    VL+  + +     ++  + ++  R
Sbjct: 484 DTA-CNLASLNLMQFRREDRSFDIDNYEHAVRLWTIVLEISVLMAQFPSKEIAELSYKFR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L    IPY S E   +       ++  A + S E+A E GA+  +K +
Sbjct: 543 TLGLGYANIGGLLMTSGIPYDSDEGRALCGALTAVMTGVAYATSAEMAGELGAFPGYKKN 602

Query: 715 L----------------WDQGVFPIDSIGLL---AEVRDELAMNRTSRLPWDELKKRVKT 755
                              +G   +++  +    A   D++ + R  +  WD   +  + 
Sbjct: 603 ANHMLRVMRNHRRAAYGEAEGYEGLNTAPVALDHASCPDKVLIERAQK-AWDRALELGEK 661

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  ++ 
Sbjct: 662 NGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRKL 721

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I +++ +    G+I++ P
Sbjct: 722 GYSESEIGEIEAYAVGHGSIDQAP 745


>gi|260426808|ref|ZP_05780787.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
 gi|260421300|gb|EEX14551.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
          Length = 1213

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  
Sbjct: 178 TRSKSAYEHPQPHACFIQSVADDLVSDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGER 237

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF++ +
Sbjct: 238 LSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWK 290



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 137/358 (38%), Gaps = 42/358 (11%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V + + A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 415 RTDGSVAKTVDARELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    +  FD +      R     L+  + +     ++  + +
Sbjct: 475 ---LDDTA-CNLASMNLLTFLKDGSFDAETYMHATRLWTLTLEISVLMAQFPSKEIAQLS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+  
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGYSYDSDEGRALCGALTAIMTGVSYATSAEIAGELGAFPG 590

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      + A+   ++  WDE  + 
Sbjct: 591 YERNAEHMLRVIRNHRTAAYGRTDGYEGLQVKPVALDHGNCPDKALVALAKSAWDEALRL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L
Sbjct: 651 GEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSAL 710

Query: 811 KQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIH---ATAFEI 851
            +   +  + + ++  H    G++GN   I           P  + K+    ATAF+I
Sbjct: 711 AKLG-YSSSQVEEIVGHAVGHGTLGNAPGINHTALIGHGFGPAQIDKVERSLATAFDI 767


>gi|126461930|ref|YP_001043044.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103594|gb|ABN76272.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 1218

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 188 DSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 248 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 297



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 422 RTDGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  F   +FD +      R     L+  + +     ++  + +
Sbjct: 482 ---LDDTA-CNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLS 537

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  + + S E+A E GA+S 
Sbjct: 538 YDFRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVSYATSAEMAGELGAFSG 597

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      +  +   ++  WDE  + 
Sbjct: 598 YERNAAHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRL 657

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 658 GEAHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 710


>gi|224541069|ref|ZP_03681608.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525993|gb|EEF95098.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
          Length = 788

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G +T FD  KI+RAI KAF++++ +     I +  +   +T     ++  H   
Sbjct: 3   QVIKRDGKITEFDLKKITRAIEKAFISLKKEYHPSVIDM--LALKVTSDFEKKIKDHK-- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L Q+G+  + + Y+LYR++R  VR  +S
Sbjct: 59  ---IAVEDIQDSVEDILSQAGYSDVAKSYILYRKQREKVRNMKS 99


>gi|221638914|ref|YP_002525176.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides KD131]
 gi|221159695|gb|ACM00675.1| Ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides KD131]
          Length = 1218

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 188 DSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 248 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 297



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 422 RTDGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  F   +FD +      R     L+  + +     ++  + +
Sbjct: 482 ---LDDTA-CNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLS 537

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S 
Sbjct: 538 YDFRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVAYATSAEMAGELGAFSG 597

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      +  +   ++  WDE  + 
Sbjct: 598 YERNAAHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRL 657

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 658 GEAHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 710


>gi|77463055|ref|YP_352559.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387473|gb|ABA78658.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1218

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 188 DSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 248 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 297



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 422 RTDGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  F   +FD +      R     L+  + +     ++  + +
Sbjct: 482 ---LDDTA-CNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLS 537

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S 
Sbjct: 538 YDFRTLGLGYANIGGLLMNMGLGYDSSEGRALCGALSAIMTGVAYATSAEMAGELGAFSG 597

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      +  +   ++  WDE  + 
Sbjct: 598 YERNAGHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRL 657

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 658 GEAHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 710


>gi|152974878|ref|YP_001374395.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023630|gb|ABS21400.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 233

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           D+ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+          K+A +F
Sbjct: 74  DIAYGENFKFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVKKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            + + +R  G  I G    + GV+P +K+  D+    NQ G
Sbjct: 193 LNLSKLRARGEQIKGIENAASGVVPVMKLLEDSFSYANQLG 233


>gi|332557931|ref|ZP_08412253.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
 gi|332275643|gb|EGJ20958.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
          Length = 1218

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G
Sbjct: 188 DSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+E+F++ +
Sbjct: 248 -GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWK 297



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 24/293 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + I A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 422 RTDGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  F   +FD +      R     L+  + +     ++  + +
Sbjct: 482 ---LDDTA-CNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLS 537

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S 
Sbjct: 538 YDFRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVAYATSAEMAGELGAFSG 597

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      +  +   ++  WDE  + 
Sbjct: 598 YERNAGHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRL 657

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 658 GEAHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 710


>gi|7532773|emb|CAB87139.1| aerobic ribonucleotide reductase class Ib [Yersinia pestis]
 gi|7532777|emb|CAB87141.1| aerobic ribonucleotide reductase class Ib [Yersinia
           pseudotuberculosis]
          Length = 173

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 22/177 (12%)

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  I+ E Y    D   I+   KI A   ++ +  + FE
Sbjct: 6   NEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRK-SKIKAREFFQILAEIQFE 63

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSSE-----------ETAVCNLG 603
           +G+P++ F+D  N  +P +  G ++ SNLC+EI  +N+ +E           +   CNLG
Sbjct: 64  SGYPYMMFEDTVNRANPIK--GRINMSNLCSEILQVNAPTEYHEDLTYRRIGKDISCNLG 121

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
           S+N+         D      +I  A+R L  V ++ N  ++   +K N    AIGLG
Sbjct: 122 SLNIA-----QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLG 173


>gi|295109140|emb|CBL23093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus obeum
           A2-162]
          Length = 791

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F  SKI+ AI KAF A E       +  +D+I +L    VT   Q+  +
Sbjct: 3   QVVKRDGEIAEFQMSKITAAIDKAFDAKE------KVYSKDMI-DLMALRVTADFQNKIT 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S
Sbjct: 56  DGKVTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKS 99


>gi|256752117|ref|ZP_05492984.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749026|gb|EEU62063.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 692

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D + +  E+       H 
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEVTDYVEK-------HF 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   I  +E IQD VE  L++ GH K  + Y+LYR++  D+R
Sbjct: 57  EG--IASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQDIR 96


>gi|84503411|ref|ZP_01001471.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
 gi|84388198|gb|EAQ01150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
          Length = 1216

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R  G  + G 
Sbjct: 182 SAYEHPQPHACFIQSVGDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEKLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEYINWK 290



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 124/330 (37%), Gaps = 28/330 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V + I A  LW  +    +    P I + D  N        G +  SN C+E   
Sbjct: 415 RTDGSVAKTIKARDLWETIGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    +  F  +      R     L+  + +     ++  + +
Sbjct: 475 ---LDDTA-CNLASMNLLTFLEDGVFQAEDYVHATRLWTITLEISVLMAQFPSQEIAQRS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +A      ++  + + S E+A E G +  
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGLGYDSDEGRAMAGALTAIMTGVSYATSAEMAGELGTFPG 590

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +K                  G         +  + L      +  +   ++  WDE  + 
Sbjct: 591 YKRNAEHMLRVIRNHRNAAYGRTDGYEQLAVKPVALDHANCPDGKLVDLAKTSWDEALRL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L
Sbjct: 651 GEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAAL 710

Query: 811 KQRDLWD---EAMISDLKYHDGSIGNIERI 837
           ++        E +IS    H GSIGN   I
Sbjct: 711 EKLGYGSAQIEEIISYAVGH-GSIGNAPAI 739


>gi|254500218|ref|ZP_05112369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
 gi|222436289|gb|EEE42968.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
          Length = 1222

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   +   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ V
Sbjct: 179 FQTGKLTKSKTAYEHPQPHACFIQSVGDDLVNDGGIMDLWVREARLFKYGSGTGSNFSHV 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 239 RAEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEEYINWK 297



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 128/324 (39%), Gaps = 26/324 (8%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW ++    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 VLKTVKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +TA CNL S+NL+  F N    F  D     +R    VL+  + +     ++  + ++  
Sbjct: 484 DTA-CNLASLNLM-QFRNEDGSFAIDNYEHGVRLWTIVLEISVLMAQFPSKEIAELSYKF 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK- 712
           R +GLG       L    IPY S E   I       ++  + + S E+A E G++  +K 
Sbjct: 542 RTLGLGYANIGGLLMTAGIPYDSDEGRAICGALTAVMTGVSYATSAEMAGELGSFPGYKK 601

Query: 713 -----------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
                            G          + + L      E  +   ++  WD   +  + 
Sbjct: 602 NAKHMLRVIRNHRLAAHGKAEGYEGLKTNPVPLDHASCPEPILVERAKKAWDRALELGEK 661

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  ++ 
Sbjct: 662 NGFRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRKL 721

Query: 815 LWDEAMISDLKYHDGSIGNIERIP 838
            + E+ I +++ +    G+I++ P
Sbjct: 722 GYSESEIGEIEAYAVGHGSIDQAP 745


>gi|6782386|emb|CAB70098.1| ribonucleotide reductase R1 subunit [Plasmodium yoelii]
          Length = 86

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 44/71 (61%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW  +L    ETG P++ +KD CN  S Q+++G +  SNLC EI   +S +E 
Sbjct: 13  KTVLAQDLWFAILQSQIETGVPYMLYKDACNSESNQKNLGTIKCSNLCCEIIEYTSPDEV 72

Query: 598 AVCNLGSINLL 608
           AVCNL SI L+
Sbjct: 73  AVCNLASIALM 83


>gi|190886995|gb|ACE95558.1| ribonucleotide reductase [Muromegalovirus C4A]
          Length = 1173

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 153/364 (42%), Gaps = 39/364 (10%)

Query: 451  YLETWHIDVEEFLDLRKNTGDDRRR--THDMNTANWIPDLFMKRVTQNAG---WTLFSPD 505
            Y + W +D  +      + G +     T  +NT    P +F  R   ++G   W +F+  
Sbjct: 674  YFDIWSVDALKIFSFILDAGREYEGLITFAVNT----PRIFWDRYLDSSGDKMWLMFARR 729

Query: 506  EVSDLHDLYGKEFEIAYENYERQADRGEIKV-------------FRKISAVALWRKMLTM 552
            E + L  L  K F   YE  ER   R  I V              R  +AV     + +M
Sbjct: 730  EAAALCGLDLKSFRNVYEKMERDG-RSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSM 788

Query: 553  LFET-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            + E  G P +    P         VG      LC  I L +   E A     S++++   
Sbjct: 789  IPENIGRPAVC--GPGVSVVSGGFVGCTPIHELC--INLENCVLEGAAVE-SSVDVVLGL 843

Query: 612  ANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L
Sbjct: 844  GC-RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRL 902

Query: 671  HIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGL 728
               +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D   L
Sbjct: 903  GQKFADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPD---L 958

Query: 729  LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
              +  DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N
Sbjct: 959  FDD--DERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDN 1016

Query: 789  LYVK 792
            ++++
Sbjct: 1017 VFLE 1020


>gi|254476611|ref|ZP_05089997.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
 gi|214030854|gb|EEB71689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
          Length = 1216

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G  GKS
Sbjct: 186 HPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEALSG-GGKS 244

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 245 SGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWK 290



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 144/364 (39%), Gaps = 52/364 (14%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + + A  LW K+    +    P I F D  N        G +  SN C+E  
Sbjct: 414 NRVDGKVAKTVRARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPADGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + 
Sbjct: 474 F---LDDTA-CNLASLNLLTFLKDGEFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQR 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G ++
Sbjct: 530 SYDFRTLGLGYANIGGLLMNMGFGYDSIEGRALCGALTAIMTGVSYATSAEMASELGPFA 589

Query: 710 SFK------------------GSLWDQGVFPIDSIGL-LAEVRD----ELAMNRTSRLPW 746
            ++                  GS+       +  + L +A   D    ELAM+      W
Sbjct: 590 RYEANANHMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDIANCPDPRLAELAMSS-----W 644

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNS 804
           DE     +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N 
Sbjct: 645 DEALDLGEKHGYRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 704

Query: 805 FLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---T 847
            +   L+    +  A I ++  +    GSIGN   I           P++L KI A   +
Sbjct: 705 SVPAALEGLG-YSTAQIGEIVSYAVGHGSIGNAPAINHTSLAGHGFGPNELAKIDAALES 763

Query: 848 AFEI 851
           AF+I
Sbjct: 764 AFDI 767


>gi|190886666|gb|ACE95231.1| ribonucleotide reductase [Muromegalovirus G4]
          Length = 1175

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 35/362 (9%)

Query: 451  YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WTLFSPDEV 507
            Y + W +D  +      + G  R     ++ A   P +F  R   ++G   W +F+  E 
Sbjct: 676  YFDIWSVDALKIFSFILDVG--REYEGLISFAVNTPRIFWDRYLDSSGDKMWLMFARREA 733

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKV-------------FRKISAVALWRKMLTMLF 554
            + L  L  K F   YE  ER   R  I V              R  +AV     + +M+ 
Sbjct: 734  AALCGLDLKSFRNVYEKMERDG-RSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSMIP 792

Query: 555  ET-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            E  G P +    P         VG      LC  I L +   E A     S++++     
Sbjct: 793  ENIGRPAVC--GPGVSVVSGGFVGCTPIHELC--INLENCVLEGAAVE-SSVDVVLGLGC 847

Query: 614  NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L  
Sbjct: 848  -RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVVNRLGQ 906

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730
             +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D   L  
Sbjct: 907  KFADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPD---LFD 962

Query: 731  EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +  DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N++
Sbjct: 963  D--DERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVF 1020

Query: 791  VK 792
            ++
Sbjct: 1021 LE 1022


>gi|167039791|ref|YP_001662776.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300914964|ref|ZP_07132279.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307724884|ref|YP_003904635.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
 gi|166854031|gb|ABY92440.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300888688|gb|EFK83835.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307581945|gb|ADN55344.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
          Length = 692

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D + +  E       +H 
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEVTDYVE-------KHF 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   I  +E IQD VE  L++ GH K  + Y+LYR++  D+R
Sbjct: 57  EG--IATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIR 96


>gi|114769378|ref|ZP_01447004.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
 gi|114550295|gb|EAU53176.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
          Length = 1216

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 113/296 (38%), Gaps = 30/296 (10%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + KV + + A  LW  +    +    P + + D  N        G +  SN C+E   
Sbjct: 420 RTDGKVSKTVKAKELWEDVGHAAWACADPGVQYHDTINAWHTCPEDGQIRGSNPCSEYMF 479

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL  F + +FD D      R     L+  + +     E   + +
Sbjct: 480 ---LDDTA-CNLASMNLLKFFKDGEFDADAYMHATRLWTITLETSVLMAQFPSEAIARGS 535

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + + Y S E   +       ++  +   S E+A+E G +  
Sbjct: 536 YDFRTLGLGYANIGGLLMNMGLSYDSDEGRSMCAALTALMTGISYKTSAEMAKELGPFPG 595

Query: 711 F---------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +                     K       V P+         R+ + + +TS   W+E 
Sbjct: 596 YAKNSQHMLRVMRNHKRAAFGKKAGYEGLEVKPVPLDAKNCPDRNLIDLAKTS---WEEA 652

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 653 VQLGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 708



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           NS   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG      G
Sbjct: 186 NSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRG-SDESLG 244

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A     +  H DVEEF+  +
Sbjct: 245 GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDVEEFISWK 295


>gi|182678921|ref|YP_001833067.1| ribonucleotide-diphosphate reductase subunit alpha [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634804|gb|ACB95578.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1236

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    + G
Sbjct: 188 QSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGENEKLSG 247

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
             GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+++D +
Sbjct: 248 -GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEDYIDWK 297


>gi|225575072|ref|ZP_03783682.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037742|gb|EEG47988.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
          Length = 789

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  FD  KIS AI KAF A E   +      +D++ +L    VT   Q   +
Sbjct: 3   QVVKRDGEIAEFDLQKISNAICKAFEAKEKHYS------EDMM-SLLALRVTADFQDKIA 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L+Q+G+  + + Y+LYR++R  VR  +S
Sbjct: 56  DEQISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKVRNMKS 99


>gi|126731267|ref|ZP_01747074.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
 gi|126708178|gb|EBA07237.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
          Length = 1220

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 182 SAYEHPQPHACFIQSVSDDLVSDGGIMDLWVREARLFKYGSGTGTNFSSLRAQGEALSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+EEF++ +
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFINWK 290



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 111/293 (37%), Gaps = 24/293 (8%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V + I A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 415 RTDGSVAKTIDAKELWEQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    +  F  D      R     L+  + +     ++  + +
Sbjct: 475 ---LDDTA-CNLASMNLLTFLKDGVFQSDDYMHATRLWTLTLEISVTMAQFPSKEIAQLS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+S 
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGYGYDSEEGRALCGALTAIMTGVSYATSAEMAGELGAFSG 590

Query: 711 F--------------KGSLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +              + + W +        +  + L      +  +   +   WDE  K 
Sbjct: 591 YERNAKHMLKVIRNHRNAAWGKTTGYEKLEVKPVALDHRNCPDATLVELAMASWDEALKL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 651 GERHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 703


>gi|126726388|ref|ZP_01742229.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126704251|gb|EBA03343.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 1236

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 135/336 (40%), Gaps = 37/336 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + ISA  LW ++    +    P I + D  N        G +  SN C+E  
Sbjct: 421 NRTDGKVKKTISARELWEQIGHAAWACADPGIQYHDTINAWHTCPEDGEIRGSNPCSEYM 480

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-AVRVLDNVIDINCHTIEKAKK 648
                ++TA CNL S+NLL  + + +FD        R  A+ +  +V+     + E A++
Sbjct: 481 F---LDDTA-CNLASMNLLTFYNDKKFDTAAYMHASRLWAITLEISVMMAQFPSKEIAQR 536

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           S  T R +GLG       L  +   Y S E   I       +   + + S E+A+++G +
Sbjct: 537 SYET-RTLGLGFANLGGLLMNMGYSYDSDEGRAICGALTAIMCGVSYATSAEMAKDQGPF 595

Query: 709 SSFKGS-----------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             +K +                         +    P+D+    A   D+  M   +R  
Sbjct: 596 EKYKVNEKHMLRVMRNHHRAVHSKTDGYEGLNMAPVPLDA----ANCPDQ-DMVDMARAS 650

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
           WDE     +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 651 WDEALALGEKHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 710

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             +   L+ +  +  + I ++  +    G +   PD
Sbjct: 711 RSVPGALEAQG-YSSSQIEEIISYAVGHGTLGNAPD 745



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+    D+L    GI       A L KY  G G +++ VRG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGCSDNLVNDGGIMDLWMREARLFKYGSGTGTNFSHVRGNGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A ++  GG  R+ A    ++  H DV+EF++ +
Sbjct: 248 GGKSSGLMDFLKIGDRAAGSIKSGGTTRRAAKMVIVDVDHPDVQEFINWK 297


>gi|190886830|gb|ACE95394.1| ribonucleotide reductase [Muromegalovirus WP15B]
          Length = 1180

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 35/362 (9%)

Query: 451  YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WTLFSPDEV 507
            Y + W +D  +      + G  R     ++ A   P +F  R   ++G   W +F+  E 
Sbjct: 681  YFDIWSVDALKIFSFILDVG--REYEGLISFAVNTPRIFWDRYLDSSGDKMWLMFARREA 738

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKV-------------FRKISAVALWRKMLTMLF 554
            + L  L  K F   YE  ER   R  I V              R  +AV     + +M+ 
Sbjct: 739  AALCGLDLKSFRNVYEKMERDG-RSAITVSPWWAVCQLDACVARGNTAVVFPHNVKSMIP 797

Query: 555  ET-GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            E  G P +    P         VG      LC  +  N   E  AV    S++++     
Sbjct: 798  ENIGRPAVC--GPGVSVVSGGFVGCTPIHELCINLE-NCVLEGAAV--ESSVDVVLGLGC 852

Query: 614  NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +F +  L S +R AV + + +ID+   T    A K    +R + +G++GF + ++ L  
Sbjct: 853  -RFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVVNRLGQ 911

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFPIDSIGLLA 730
             +A  E+ ++     EFI + A+ ASV+L    GA  +  F  SL+  G F  D   L  
Sbjct: 912  KFADMESYDLNQRIAEFIYYTAVRASVDLCMA-GADPFPKFPKSLYAAGRFYPD---LFD 967

Query: 731  EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +  DE    R ++   ++L++ V   G+RN++ +        AN+ G +    P   N++
Sbjct: 968  D--DERGPRRMTKEFLEKLREDVVKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVF 1025

Query: 791  VK 792
            ++
Sbjct: 1026 LE 1027


>gi|15965308|ref|NP_385661.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           meliloti 1021]
 gi|307307934|ref|ZP_07587659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
 gi|307317165|ref|ZP_07596606.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|15074488|emb|CAC46134.1| Vitamin B12-dependent ribonucleotide reductase [Sinorhizobium
           meliloti 1021]
 gi|306897253|gb|EFN27998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|306901550|gb|EFN32153.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
          Length = 1263

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRAEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 138/339 (40%), Gaps = 45/339 (13%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGRVMKTLKARDLWESISHAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-------AVRVLDNVIDINCHTI 643
               ++TA CNL S+NL+      QF   K A+T R        AVR+   V++++    
Sbjct: 482 ---LDDTA-CNLASLNLM------QF---KDAATKRINIGDYEHAVRLWTVVLEVSVMMA 528

Query: 644 EKAKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
           +   +     ++ +R +GLG       L    IPY SPE   IA      ++  A + S 
Sbjct: 529 QFPSREIAELSYEYRTLGLGYANIGGLLMSSGIPYDSPEGRAIAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E++ + G +  F                   G         ++ + L+     +  +   
Sbjct: 589 EISAKLGPFPGFAPNRDNMLRVMRNHRRAAHGETAGYEGLSVNPVALVHGDCPDQDLIAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-F 799
           ++  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F
Sbjct: 649 AKGAWDKAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            ++N  +   L+    + E+ I++++ +    GN+ + P
Sbjct: 709 KIINRAVPEALRTLG-YSESQIAEMEAYAVGHGNLNQAP 746


>gi|255024696|ref|ZP_05296682.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-208]
          Length = 141

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 35/160 (21%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +                
Sbjct: 1   LAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE---------------- 44

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
             +++D     +  DL        N+   P         A+++D    +    RRQ+ +D
Sbjct: 45  --EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVD 90

Query: 869 QAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 91  QSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 128


>gi|115524508|ref|YP_781419.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisA53]
 gi|115518455|gb|ABJ06439.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisA53]
          Length = 1255

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 193 SAYEHPQPHACFIQGIQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 251

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 252 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWK 301



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 141/360 (39%), Gaps = 44/360 (12%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + I A  LW K+ T  + +  P + F    N     +  G + +SN C+E   
Sbjct: 426 RTSKKVMKTIKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 485

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLL  +     +FD D      R    VL+  + +     ++  +
Sbjct: 486 ---LDDTA-CNLASANLLTFYDIEAKRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQIAE 541

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + + Y S E   +       ++  + + S E+AQ+ G +
Sbjct: 542 LSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGGLTAIMTGVSYATSAEMAQKLGPF 601

Query: 709 SSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +K                  G         +  + L      +  +   ++  WD   
Sbjct: 602 PGYKKNASHMLRVIRNHRRAAHGESRGYEALAVAPVPLDHASCPQPEIITHAKAAWDRAL 661

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVN 808
           +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  ++N  +  
Sbjct: 662 ELGELHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPA 721

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP--------------DDLKKIHA---TAFEI 851
            L+    + E+ I++++ +    G++   P              + LKK+ A   TAF+I
Sbjct: 722 ALRVMG-YPESQIAEIEAYAVGHGSLSNAPAINHSTLKAKGFTDEALKKVEAALPTAFDI 780


>gi|92117612|ref|YP_577341.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91800506|gb|ABE62881.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           hamburgensis X14]
          Length = 1263

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKMTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  + G  G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 239 RGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWK 297



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 26/352 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNKKVMKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NL+  +  A  +FD D      R    VL+  + +     +   +
Sbjct: 482 ---LDDTA-CNLASANLITFYDTALKRFDVDAYEHVCRLWTVVLEISVLMAQFPSKAIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + +PY S E   +       ++  A   S E+A E GA+
Sbjct: 538 LSYEFRTLGLGFANIGGLLMTMGLPYDSKEGRALCGALTAIMTGIAYKTSAEMAGELGAF 597

Query: 709 SSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +K                  G         ++ + L      +  +   +   WD+  
Sbjct: 598 HGYKKNTGHMLRVIRNHRRAALGQSHGYEALAVNPVPLDHASCPQADLIVHATKAWDDAL 657

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
              +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V E
Sbjct: 658 ALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPE 717

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             +   + E+ I++++ +    G++   P  ++  + A  F  + +  +E A
Sbjct: 718 ALRVLGYRESEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVEKA 769


>gi|255103283|ref|ZP_05332260.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 741

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G +  FD  KI  AI K+F+++  KG S     +  +  L  + +      NK 
Sbjct: 3   NVVKRDGRIVPFDEKKIINAIEKSFLSLRNKGKSEVFDRE--LATLIAKKIK-----NKP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
              +HIEDIQD +E SLM S    + +EY+ YRE+R+  R  ++++
Sbjct: 56  CEKMHIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRKTYN 101


>gi|86749663|ref|YP_486159.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris HaA2]
 gi|86572691|gb|ABD07248.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris HaA2]
          Length = 1257

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWK 297



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 140/354 (39%), Gaps = 38/354 (10%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+ T  + +  P + F    N     +  G + +SN C+E       
Sbjct: 426 KVMKTVKARDLWEKIGTAAWASADPGLHFNSTMNDWHTCKASGDIRASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S NLL  +    N FD        R    VL+  + +     ++  + ++ 
Sbjct: 483 DDTA-CNLASANLLTFYDTTANVFDLPAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYE 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  + + S E+A + G +  +K
Sbjct: 542 FRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGVSYATSAEMAAKLGPFPGYK 601

Query: 713 GS-----------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            +                              P+D  G    + + +A  + +   WD+ 
Sbjct: 602 KNAAHMLRVIRNHRRAAHGESRGYEALSVAPVPLDHAG--CPIPEAIAHAKAA---WDKA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF-TVVNSFLV 807
            +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  ++N  + 
Sbjct: 657 LELGELHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
             L+    + E  I++++ +    G++   P  +   + A  F  + +  +E+A
Sbjct: 717 AALRILG-YPENQIAEIEAYAVGHGSLSNAPAINRSTLKAKGFTDEALAKVEAA 769


>gi|126737866|ref|ZP_01753596.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126721259|gb|EBA17963.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 1239

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  + G 
Sbjct: 209 SSYEHPQPHACFIQSVSDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEPLSG- 267

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 268 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIQWK 317



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 139/364 (38%), Gaps = 52/364 (14%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R   +V + + A  LW K+    +    P I F D  N      + G +  SN C+E  
Sbjct: 441 NRTNGEVAKTVKARELWEKVGHAAWACADPGIQFHDTVNEWHTCLNDGEIRGSNPCSEYM 500

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL       F  +      R     L+  + +     +   + 
Sbjct: 501 F---LDDTA-CNLASLNLLTFLKAGNFQAEDFMHACRLWTVTLEISVTMAQFPSKAIAQR 556

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +H +R +GLG       L  +   Y S E   +       ++  A + S E+A E G+++
Sbjct: 557 SHDYRTLGLGYANIGGLLMNMGFSYDSEEGRALCGSLTALMTGVAYATSAEMASELGSFA 616

Query: 710 SFKG-------------------SLWDQGV----FPIDSIGLLAEVRDELAMNRTSRLPW 746
            +                     +   +G+     P+D  G       +LA+       W
Sbjct: 617 GYANNSEHMLKVIRNHRNAALGKATGYEGLSVPPVPLDIRGCPDARLTDLALG-----AW 671

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNS 804
           DE     +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N 
Sbjct: 672 DEALALGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 731

Query: 805 FLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIH---AT 847
            +   L+    +  A I ++  +    G+IGN   I           P++L KI     +
Sbjct: 732 SVPAALEGLG-YSSAEIEEIVSYAVGHGTIGNAPGINHTSLTGHGFGPNELSKIDRALES 790

Query: 848 AFEI 851
           AF+I
Sbjct: 791 AFDI 794


>gi|302390515|ref|YP_003826336.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201143|gb|ADL08713.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 696

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G V  FD  KI  AI KA  AV G   + + R+ D         V ++L+    
Sbjct: 4   QIIKRDGTVQKFDREKIENAIFKAARAVGGSDRTIAQRLTD--------EVIKILEKRYR 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +E++QD VE  L+++GH +  + Y+LYR++  D+R
Sbjct: 56  GSVPTVENVQDTVEKVLIENGHARTAKAYILYRKQHQDMR 95


>gi|163731970|ref|ZP_02139416.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
 gi|161394268|gb|EDQ18591.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
          Length = 912

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 138/358 (38%), Gaps = 40/358 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +R + KV + I A  LW K+    +    P I + D  N        G +  SN C+E  
Sbjct: 429 NRVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGAIRGSNPCSEYM 488

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + 
Sbjct: 489 F---LDDTA-CNLASMNLLTFLKDGEFQIEDYMHASRLWTVTLEISVMMAQFPSKEIAQR 544

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   I       ++  + + S E+A E G + 
Sbjct: 545 SYDFRTLGLGYANIGGLLMNMGYSYDSTEGRAICGALTAIMTGVSYATSAEMAGELGPFP 604

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +                   G +       ++ + L  +   +  M   +R  WD+  +
Sbjct: 605 GYAKNADNMLRVIRNHRTAAYGKVGGYEDLAVNPVPLDYKSCPDARMIDVARGAWDQALE 664

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 665 LGQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPGA 724

Query: 810 LKQRDLWDEAMISDLKYHDG--SIGNIERI-----------PDDLKKIH---ATAFEI 851
           L++       +   + Y  G  +IGN   I           P++L K+    A+AF+I
Sbjct: 725 LEKLGYGSAQIEEIVSYAVGHATIGNAPGINHTSLAGHGFGPNELAKVDAALASAFDI 782



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R         
Sbjct: 197 SSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRA-AGEGLSG 255

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 256 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 305


>gi|227822105|ref|YP_002826076.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           fredii NGR234]
 gi|227341105|gb|ACP25323.1| ribonucleotide-diphosphate reductase alpha subunit [Sinorhizobium
           fredii NGR234]
          Length = 1263

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRAEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+EE+++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWK 297



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 137/339 (40%), Gaps = 45/339 (13%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E   
Sbjct: 422 RKDGRVMKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-------AVRVLDNVIDINCHTI 643
               ++TA CNL S+NL+      QF   K A+T R        AVR+   V++++    
Sbjct: 482 ---LDDTA-CNLASLNLM------QF---KDAATKRINIADYEHAVRLWTVVLEVSVMMA 528

Query: 644 EKAKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
           +   +     ++ +R +GLG       L    IPY S E   IA      ++  A + S 
Sbjct: 529 QFPSREIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEGRAIAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E++ + G +  F                   G         ++ + L+     +  +   
Sbjct: 589 EISAKLGPFPGFAPNRENMLRVMRNHRRAAHGETTGYEGLSVNPVALIHADCPDQELIAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-F 799
           ++  WDE  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F
Sbjct: 649 AKSAWDEAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            ++N  +   L+    + E+ I++++ +    GN+ + P
Sbjct: 709 KIINRAVPEALRTLG-YSESQIAEIEAYAVGHGNLNQAP 746


>gi|90423882|ref|YP_532252.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90105896|gb|ABD87933.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB18]
          Length = 1262

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWK 297



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 28/353 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNKKVMKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLL  +    N+FD D      R    VL+  + +     ++  +
Sbjct: 482 ---LDDTA-CNLASANLLTMYDTTTNRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + + Y S E   +       ++  A S S E+AQ+ G +
Sbjct: 538 LSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYSTSAEMAQKLGPF 597

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVR--DELAMNRT---------------SRLPWDELK 750
             +K +      V          E R  + LA+N                 ++  WD+  
Sbjct: 598 PGYKKNAGHMLRVIRNHRRAAHGESRGYEGLAVNPVPLDHASCPQEDVVTHAKAAWDKAL 657

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF-TVVNSFLVN 808
           +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  ++N  +  
Sbjct: 658 ELGEAHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPA 717

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
            L+    + E  I++++ +    G++   P  ++  + A  F  + +  +E+A
Sbjct: 718 ALRILG-YPEHQIAEIEAYAVGHGSLSNAPAINVATLKAKGFTDEALKKVEAA 769


>gi|260893396|ref|YP_003239493.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260865537|gb|ACX52643.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 670

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FDP++I+ AI KA  AV G+    ++R+           V + L+   + 
Sbjct: 5   IRKRDGREVPFDPNRITEAIFKAARAVGGEDRETAMRLT--------LEVMKYLKARYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            I  +ED+QD VE  L++ GH K  + Y+LYR  R+ +R A+S
Sbjct: 57  TIFGVEDVQDAVEKVLIEHGHAKTAKAYILYRAWRTRIREAKS 99


>gi|218661576|ref|ZP_03517506.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 569

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 130/331 (39%), Gaps = 41/331 (12%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW  +    + +  P I F    N        G +  SN C+E       ++
Sbjct: 1   MKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF---LDD 57

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRVLDNVIDINCHTIEKAKKS-- 649
           TA CNL S+NLL      QF  DK    I  A     VR+   V++++    +   K   
Sbjct: 58  TA-CNLASLNLL------QFK-DKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIA 109

Query: 650 --NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
             ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E G 
Sbjct: 110 ELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGP 169

Query: 708 YSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           + +F                             ID + L+     +  +   ++  WD+ 
Sbjct: 170 FPNFAPNRESMLRVIRNHRRAAYAETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKA 229

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLV 807
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + 
Sbjct: 230 LELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 289

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             L+    + E+ I++++ +    GN+ + P
Sbjct: 290 EALRTLG-YSESQIAEIEAYAVGHGNLNQAP 319


>gi|159044334|ref|YP_001533128.1| ribonucleotide-diphosphate reductase subunit alpha [Dinoroseobacter
           shibae DFL 12]
 gi|157912094|gb|ABV93527.1| vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter
           shibae DFL 12]
          Length = 1224

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 189 SSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEALSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A     +  H D+EEF++ +
Sbjct: 248 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFVNWK 297



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 152/413 (36%), Gaps = 71/413 (17%)

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  + D F+K V  +A W L                             R + KV
Sbjct: 395 QNSNNSVRVTDAFLKAVKDDADWELIR---------------------------RTDGKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW  +    +    P I F D  N        G +  SN C+E       ++
Sbjct: 428 AKTIKARELWETIGHAAWACADPGIQFHDTVNDWHTCPEDGAIRGSNPCSEYMF---LDD 484

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAKKSNHTHRA 655
           TA CNL S+NLL  + + +FD +      R     L+ +V+     + E A++S +  R 
Sbjct: 485 TA-CNLASMNLLTFYRDGKFDSEGYMHAARLWTLTLEISVLMAQFPSKEIAQRS-YDFRT 542

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK--- 712
           +GLG       L  +   Y S E   +       ++  + + S E+A E G +  +    
Sbjct: 543 LGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVSYATSAEIAAEVGPFPGYAKNA 602

Query: 713 ---------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                          G            + L      +  + + +   WDE  K  +  G
Sbjct: 603 DHMLRVIRNHRNAAYGKTDGYEALATKPVALDHANCPDQTLVKLAMSSWDEALKLGEQHG 662

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFL---VNELKQ 812
            RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   ++ L  
Sbjct: 663 YRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDTLGY 722

Query: 813 RDLWDEAMISDLKYHDGSIGNIERI-----------PDDLKKIHA---TAFEI 851
                E +I+    H G++GN   +           P+ ++KI A   +AF+I
Sbjct: 723 SSAQIEEIIAYAVGH-GTLGNAPGVNHTALIGHGFGPEQIEKIEAALPSAFDI 774


>gi|224539245|ref|ZP_03679784.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519127|gb|EEF88232.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 131

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 32/151 (21%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN+  +AIAPT++ + I G +   DP                V+  F + E K      
Sbjct: 1   MRNAYLLAIAPTSSTSIIAGTTAGTDP----------------VMKRFFLEEKKG----- 39

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            AM+  +            + D    ++  A+  D  W I +A  RQ  IDQAQSLNLY+
Sbjct: 40  -AMLPRVA---------PSLSDKTFWLYKGAYLTDQQWSIRAAGVRQLHIDQAQSLNLYI 89

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +E + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 90  TNEFTMRQVLNLYLLAWECGVKTVYYVRSKS 120


>gi|108515096|gb|ABF93321.1| ribonucleotide reductase large subunit [Oryctes rhinoceros virus]
          Length = 737

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 31/340 (9%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           L  +RDF +   G+++L +RY L    I    + + + F  R +   +          + 
Sbjct: 95  LDTDRDFIYSSHGMRLLKNRYLLPAEPIQYCMLRIAKLFSRRNSSNNSSSSDGNSIDDIN 154

Query: 342 F------YNLLSSFHFMCSTPTLFNSGTRH----PQLSSCFLTTVPDDLYGIFGALQENA 391
           F      Y++LS   +M ++  L ++        P  +   L   PD        + E  
Sbjct: 155 FQLWRLMYDVLSC-GYMHTSSILADADNADKNIVPGEACRLLVCNPDYDRAFVNQINEIC 213

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L     G+G   + V     H +  NGK +G         D+   ++   +RK  +  Y
Sbjct: 214 NLISLGVGVGMSASTV---PLHGYAVNGKIRGGFKSFARKLDSCNYLSIY-ERKPKIAIY 269

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-- 509
           +E  +  + E  +LR    +      ++     +PD F++    +  W LF  D   D  
Sbjct: 270 IEMHNNTIYEAFELRNPLTN---HLENVFVGIMVPDYFIECYENDEDWYLFPGDAKLDGR 326

Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPC 567
            L +  G E++  Y+ +       E  ++  K+S+ AL   ++T + ETG P++ + D  
Sbjct: 327 TLCEFTGDEYKRMYKRFV------EANLYTNKVSSSALMDDLVTCISETGSPYVVWSDNV 380

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           N  S  +H+G + + NLC EI   +S  +++ C L S+N 
Sbjct: 381 NRFSNHKHLGKIKTLNLCAEIANYASVGKSSSCTLMSVNF 420


>gi|213159319|ref|YP_002321362.1| rr1 [Oryctes rhinoceros virus]
 gi|202073505|gb|ACH96181.1| rr1 [Oryctes rhinoceros virus]
          Length = 737

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 31/340 (9%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           L  +RDF +   G+++L +RY L    I    + + + F  R +   +          + 
Sbjct: 95  LDTDRDFIYSSHGMRLLKNRYLLPAEPIQYCMLRIAKLFSRRNSSNNSSSSDGNSIDDIN 154

Query: 342 F------YNLLSSFHFMCSTPTLFNSGTRH----PQLSSCFLTTVPDDLYGIFGALQENA 391
           F      Y++LS   +M ++  L ++        P  +   L   PD        + E  
Sbjct: 155 FQLWRLMYDVLSC-GYMHTSSILADADNADKNIVPGEACRLLVCNPDYDRAFVNQINEIC 213

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L     G+G   + V     H +  NGK +G         D+   ++   +RK  +  Y
Sbjct: 214 NLISLGVGVGMSASTV---PLHGYAVNGKIRGGFKSFARKLDSCNYLSIY-ERKPKIAIY 269

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-- 509
           +E  +  + E  +LR    +      ++     +PD F++    +  W LF  D   D  
Sbjct: 270 IEMHNNTIYEAFELRNPLTN---HLENVFVGIMVPDYFIECYENDEDWYLFPGDAKLDGR 326

Query: 510 -LHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPC 567
            L +  G E++  Y+ +       E  ++  K+S+ AL   ++T + ETG P++ + D  
Sbjct: 327 TLCEFTGDEYKRMYKRFV------EANLYTNKVSSSALMDDLVTCISETGSPYVVWSDNV 380

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           N  S  +H+G + + NLC EI   +S  +++ C L S+N 
Sbjct: 381 NRFSNHKHLGKIKTLNLCAEIANYASVGKSSSCTLMSVNF 420


>gi|56697002|ref|YP_167364.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria
           pomeroyi DSS-3]
 gi|56678739|gb|AAV95405.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria pomeroyi DSS-3]
          Length = 1214

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 139/359 (38%), Gaps = 52/359 (14%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV + + A  LW K+    +    P I F D  N        G +  SN C+E       
Sbjct: 418 KVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMF---L 474

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           ++TA CNL S+NLL    + +F  +      R     L+  + +     ++  + ++  R
Sbjct: 475 DDTA-CNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFR 533

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711
            +GLG       L  +   Y S E   +       ++  A + S E+A E G ++ +   
Sbjct: 534 TLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGYERN 593

Query: 712 -----------------KGSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                            K + ++Q      P+D          ELAM       WDE   
Sbjct: 594 AANMLRVIRNHRTAAYGKANGYEQLSVKPVPLDHSNCPDPRLVELAM-----ASWDEALS 648

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNE 809
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   
Sbjct: 649 LGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAA 708

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           L+    +  A I ++  +    G+IGN   I           P++L+K+ A   +AF+I
Sbjct: 709 LENLG-YSSAQIEEIVSYAVGHGTIGNAPGINHTSLTGHGFGPNELRKVDAALESAFDI 766



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G
Sbjct: 180 DSAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG 239

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
               S  ++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F+  +
Sbjct: 240 GGKSSG-LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQWK 289


>gi|299133758|ref|ZP_07026952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
 gi|298591594|gb|EFI51795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
          Length = 1250

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G+S G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWK 297



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 129/329 (39%), Gaps = 25/329 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E   
Sbjct: 422 RTNGKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               ++TA CNL S NLL  +  +  +FD D      R    VL+  + +     +   +
Sbjct: 482 ---LDDTA-CNLASANLLTFYDTHTRRFDADAYEHLCRLWTIVLEISVMMAQFPSKAIAE 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L  + +PY S E   +       ++  A + S E+A E G +
Sbjct: 538 LSYEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIMTGTAYATSAEMAAELGTF 597

Query: 709 SSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             +K                  G         ++ + L      +  +   ++  WD   
Sbjct: 598 PGYKKNASHMLRVIRNHRRAAHGEAAGYEALAVNPVPLDHASCPQADIVDHAKAVWDRAL 657

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  K  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V E
Sbjct: 658 ELGKANGFRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPE 717

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             +   + E+ I++++ +    G++   P
Sbjct: 718 ALRALGYRESEIAEIEAYAVGHGSLSNAP 746


>gi|78186460|ref|YP_374503.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            luteolum DSM 273]
 gi|78166362|gb|ABB23460.1| ribonucleotide reductase family protein [Chlorobium luteolum DSM 273]
          Length = 1521

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 40/295 (13%)

Query: 596  ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE----KAKKSNH 651
            +   CNL S+NL+ HF + +  + K+ + +R A  +   V++I+            + ++
Sbjct: 831  DNTACNLASLNLI-HFVDEESGHVKI-NELRHAAALWTVVLEISVLMAHFPSPDIARLSY 888

Query: 652  THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             +R +GLG     + L +L IPY SP+A+ +A      I+  A   S E++++ G +  +
Sbjct: 889  EYRTLGLGFANLGTVLMVLGIPYDSPKALALAGAISAIITGQAYVTSAEISRDLGPFDGY 948

Query: 712  KGSLWDQ-------------------GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            + +  +                        +   G+ +E   +        + WDE  ++
Sbjct: 949  QANSKEMLRVIRNHRRAARNESEEEYEELSVKPRGIDSEYCPKELFEAAGSV-WDEALQK 1007

Query: 753  VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
             K  G RN+    IAPT TI  +    +  I+P +  +  K    G  F +VN  +   L
Sbjct: 1008 GKKYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKAL 1067

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            K+     + +    KY  GS G++E  P            I+  WL+      +K
Sbjct: 1068 KRLGYAAQEIEEIEKYCKGS-GSLEGCPS-----------INSQWLMNRGFTEEK 1110



 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 59/279 (21%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLRSSGEKLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR------- 474
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +    D          
Sbjct: 238 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAREEDKVASLVAGSR 296

Query: 475 ----------RTHDMNTANWIPDLFMKRVTQNA-------------------GWTLFSPD 505
                         +N A+ + +  ++R+ +NA                   G+T    +
Sbjct: 297 ICSRFLQAIVEEAILNGADRLENPKLQRLIENALHRAVPMSYIIRVLALVEQGYTTLDFE 356

Query: 506 EV-----SDLHDLYGKE-----------FEIAYENYE--RQADRGEIKVFRKISAVALWR 547
           E      S+ +   G +           F  A EN E     +R   K  R ++A  LW 
Sbjct: 357 EYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENNELWMLKERTTGKTARAVNARELWE 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           K+L   ++   P + F    N        G +++SN C 
Sbjct: 417 KILLSAWKCADPGLQFDTTINEWHTCPAAGRINASNPCV 455


>gi|89068838|ref|ZP_01156221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
 gi|89045608|gb|EAR51671.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
          Length = 1226

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 181 SSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEKLSG- 239

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 240 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 112/297 (37%), Gaps = 32/297 (10%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V R + A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 414 RTDGSVTRTVQARDLWEQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSNPCSEYMF 473

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS- 649
               ++TA CNL S+NLL    +  F    LA     A R+    ++I+    +   K  
Sbjct: 474 ---LDDTA-CNLASMNLLTFHKDGAF----LAEEYMHATRLWTLTLEISVMMAQFPSKEI 525

Query: 650 ---NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
              ++  R +GLG       L  + + Y S E   +       ++  A + S E+A E G
Sbjct: 526 AQLSYDFRTLGLGYANIGGLLMNMGLGYDSDEGRAMGGALTAIMTGVAYATSAEIAGELG 585

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+S ++                  G         +  + L      +  + + +   WDE
Sbjct: 586 AFSGYERNREHMLRVIRNHRNAAYGKSDGYEALAVKPVALDHANCPDRRLVQLATAAWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
                +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 646 ALALGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 702


>gi|325265173|ref|ZP_08131899.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
 gi|324029577|gb|EGB90866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
          Length = 788

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD +KI  AI KAF A E +        QDII +L    VT   +    
Sbjct: 3   QVTKRDGKIADFDLAKICEAIRKAFEARERQ------YNQDII-DLLALKVTADFEPKIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +V +ED+QD VE  L+++G+  + + Y+LYR++R  +R   S
Sbjct: 56  KGLVSVEDVQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNS 99


>gi|150389197|ref|YP_001319246.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949059|gb|ABR47587.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 710

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KRNG +  FD  KI  AI  A  +V GK    + R+  +  ++  +T         
Sbjct: 4   MKVQKRNGEIVDFDAIKIKEAIFSAAKSVGGKDEMTASRLSKLAVDIVSETY-------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +A I  +EDIQD VE  L++ GH K  + Y+LYR+++ D+R  ++
Sbjct: 56  AANIPSVEDIQDIVEKVLIEEGHAKTAKSYILYRKKQKDIREVKN 100


>gi|154505221|ref|ZP_02041959.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
 gi|153794419|gb|EDN76839.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
          Length = 792

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +T F+ +KIS AI KAF A E +        QDII +L    VT   +    
Sbjct: 3   QVTKRDGEITEFNLTKISEAIRKAFEAREKE------YNQDII-DLLALKVTADFEPKIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S
Sbjct: 56  EHKIAVEDIQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNS 99


>gi|7532417|emb|CAB86984.1| aerobic ribonucleotide reductase class Ib [Acinetobacter
           calcoaceticus]
          Length = 174

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 23/179 (12%)

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +N    LFSP    D+  +YGK F +I+  ++  +         +KI+A   ++ +  + 
Sbjct: 5   RNEDMYLFSP---YDVERVYGKPFGDISVSDHYAEMVEDPRITKKKINARHFFQTVAELQ 61

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-TLNSSS--------EETA---VCN 601
           FE+G+P+I F+D  N  +P +  G ++ SNLC+EI  +NS S        EE      CN
Sbjct: 62  FESGYPYIMFEDTVNNANPVK-TGRINMSNLCSEILQVNSPSSFNDDLSYEEMGSDISCN 120

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLG 659
           LGS+N+         D      T+  A+R L  V D     ++   +  N    AIGLG
Sbjct: 121 LGSMNIAL-----AMDSPDFGGTVEAAIRGLTAVADKTAIDSVPSIRHGNDQSHAIGLG 174


>gi|313622836|gb|EFR93155.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria
           innocua FSL J1-023]
          Length = 140

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 35/158 (22%)

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +                  
Sbjct: 2   KEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE------------------ 43

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++D     +  DL        N+   P         A+++D    +    RRQ+ +DQ+
Sbjct: 44  EKKDYRRPVIAPDL--------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQS 91

Query: 871 QSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
            S N Y+  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 92  LSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVRS 127


>gi|296449099|ref|ZP_06890888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296879490|ref|ZP_06903483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
 gi|296262061|gb|EFH08867.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296429508|gb|EFH15362.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
          Length = 783

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           V KR+G V  F+  +I+RAI  A   V    A R   V D  + + LT Q V + L H  
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLAATNV----AEREGIVPDYKLSEQLT-QEVIKFLNHKY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S  +  +EDIQD V   L+++GH K + EY++YR ERS +R +++
Sbjct: 60  SESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKT 104


>gi|255305054|ref|ZP_05349226.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile ATCC 43255]
          Length = 783

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           V KR+G V  F+  +I+RAI  A   V    A R   V D  + + LT Q V + L H  
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLAATNV----AEREGIVPDYKLSEQLT-QEVIKFLNHKY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S  +  +EDIQD V   L+++GH K + EY++YR ERS +R +++
Sbjct: 60  SESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKT 104


>gi|121535244|ref|ZP_01667058.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
 gi|121306129|gb|EAX47057.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
          Length = 671

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD +KI+ AI KA  AV   G  + + ++  I+      V R L+   +
Sbjct: 4   KIKKRDGREVPFDETKITEAIFKAAKAV--GGVDKQLAMELTIE------VLRYLKQRYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +ED+QD VE  L++ GH K  + Y+LYR++R+ +R A+S
Sbjct: 56  GSIFGVEDVQDAVEKVLIEKGHAKTAKAYILYRDKRTRMREAKS 99


>gi|254977366|ref|ZP_05273838.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255094694|ref|ZP_05324172.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255316453|ref|ZP_05358036.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|255519109|ref|ZP_05386785.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-97b34]
 gi|255652288|ref|ZP_05399190.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
 gi|260681885|ref|YP_003213170.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CD196]
 gi|260685483|ref|YP_003216616.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile R20291]
 gi|260208048|emb|CBA60257.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile CD196]
 gi|260211499|emb|CBE01646.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile R20291]
          Length = 783

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           V KR+G V  F+  +I+RAI  A   V    A R   V D  + + LT Q V + L H  
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLAATNV----AEREGIVPDYKLSEQLT-QEVIKFLNHKY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S  +  +EDIQD V   L+++GH K + EY++YR ERS +R +++
Sbjct: 60  SESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKT 104


>gi|255102947|ref|ZP_05331924.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 783

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           V KR+G V  F+  +I+RAI  A   V    A R   V D  + + LT Q V + L H  
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLAATNV----AEREGIVPDYKLSEQLT-QEVIKFLNHKY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S  +  +EDIQD V   L+++GH K + EY++YR ERS +R +++
Sbjct: 60  SESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKT 104


>gi|126697679|ref|YP_001086576.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile 630]
 gi|115249116|emb|CAJ66927.1| Anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile]
          Length = 783

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           V KR+G V  F+  +I+RAI  A   V    A R   V D  + + LT Q V + L H  
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLAATNV----AEREGIVPDYKLSEQLT-QEVIKFLNHKY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S  +  +EDIQD V   L+++GH K + EY++YR ERS +R +++
Sbjct: 60  SESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKT 104


>gi|307945073|ref|ZP_07660409.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
 gi|307770946|gb|EFO30171.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
          Length = 1227

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 130/325 (40%), Gaps = 28/325 (8%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             + I A  LW ++    + +  P + +    N        G + +SN C+E       +
Sbjct: 427 AIKTIKAKELWEQIGYAAWASADPGLQYHTTINDWHTCPASGEIRASNPCSEYMF---LD 483

Query: 596 ETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +TA CNL S+NL+  F N    FD +     +R    VL+  + +     ++  + ++ +
Sbjct: 484 DTA-CNLASLNLM-QFRNEDRSFDVESYEHAVRLWTMVLEVSVLMAQFPSKEIAELSYRY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK- 712
           R  GLG       L    IPY S E   I       ++  A + S E+A E G +  +K 
Sbjct: 542 RTTGLGYANIGGLLMTSGIPYDSTEGRAICGALTAIMTGVAFATSAEMAGELGPFPGYKD 601

Query: 713 -----------------GSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVK 754
                            G          D + L  A   D+  + R ++  WD+  +  +
Sbjct: 602 NAKHMLRVMRNHRRAAFGEASGYEKLSTDPVPLDHASCADKRLVER-AKAAWDKALELGE 660

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E    
Sbjct: 661 KHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALSV 720

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             + E+ I++++ +    G++++ P
Sbjct: 721 LGYSESQIAEIEAYAVGHGSLDQAP 745



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VRG G  + G  GKS
Sbjct: 193 HPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRVRGEGEKLSG-GGKS 251

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G++ FLK+ +  A A+  GG  R+ A    ++  H DVEE+++ +
Sbjct: 252 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDVEEYINWK 297


>gi|210615495|ref|ZP_03290622.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
 gi|210150344|gb|EEA81353.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
          Length = 788

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +T F   KI  AI KAF A E     ++I   DII  L  + VT   +    
Sbjct: 3   QVTKRDGKITDFHLKKIVAAITKAFEAQE-----KAIH-PDIIDMLALK-VTADFEPKIQ 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S
Sbjct: 56  ENLIRVEDIQDSVESVLIQSGYGDVAKGYILYRKQREKIRNMKS 99


>gi|154253737|ref|YP_001414561.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154157687|gb|ABS64904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 1244

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 131/326 (40%), Gaps = 34/326 (10%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW ++    + +  P I +    N        G + +SN C+E       ++T
Sbjct: 429 KTLPARELWEQVGHAAWASADPGIQYHTTINDWHTCPASGPIRASNPCSEYMF---LDDT 485

Query: 598 AVCNLGSINLLA-HFANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAKKSNHTHRA 655
           A CNL SINL+    A+ +FD +     ++    VL+ +V+     + E A++S   +R 
Sbjct: 486 A-CNLASINLMQFRDADGRFDVEAFEHAVKLLTIVLEISVLMAQFPSREIAERS-FRYRT 543

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF---- 711
           +GLG       L    + Y S EA  +A      ++  + + S ++A+E GA+  +    
Sbjct: 544 LGLGFANIGGLLMSCGLAYDSAEARALAGAISAIMTGVSYATSAQMAKELGAFEGYAENS 603

Query: 712 -----------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G   D  V+P+    L A    +  +   +R  WD      +
Sbjct: 604 AHMLRVMRNHARAAHGYNGGYEDLSVYPL---ALDAANCPQADLVDHARASWDLAVSMGE 660

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  +   L+ 
Sbjct: 661 RYGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPQALRT 720

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIP 838
              +D A I  +  +    G +   P
Sbjct: 721 LG-YDAAAIERIVNYAVGFGTLANAP 745



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           +PQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    + G  GKS
Sbjct: 193 YPQPHACFIQSVNDDLVNENGIMDLWVREARLFKYGSGTGSNFSDLRGEDEKLSG-GGKS 251

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +
Sbjct: 252 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEDFINWK 297


>gi|114765323|ref|ZP_01444440.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114542303|gb|EAU45332.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 1215

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 117/302 (38%), Gaps = 24/302 (7%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V + + A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 415 RTDGSVAKTVDAKELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               ++TA CNL S+NLL    + QFD +      R     L+  + +     ++  + +
Sbjct: 475 ---LDDTA-CNLASMNLLTFLKDGQFDAESYMHATRLWTLTLEISVLMAQFPSKEIAQLS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+  
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTALMTGVSYATSAEIAGELGAFPG 590

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++                  G         +  + L      + A+   ++  WDE  + 
Sbjct: 591 YERNAEHMLRVIRNHRTAAYGRTDGYEGLSVKPVALDHGNCPDQALVALAKSAWDEALRL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L
Sbjct: 651 GEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSAL 710

Query: 811 KQ 812
           ++
Sbjct: 711 EK 712



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL G  G +      A L KY  G G +++ +R     + G 
Sbjct: 182 SAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAENERLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+F++ +
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 290


>gi|167916608|ref|ZP_02503699.1| hypothetical protein Bpse112_39427 [Burkholderia pseudomallei 112]
          Length = 377

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 13/181 (7%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L     
Sbjct: 24  TYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGS 83

Query: 596 ETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 84  AM----LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 138

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 139 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 198

Query: 708 Y 708
           Y
Sbjct: 199 Y 199


>gi|304391737|ref|ZP_07373679.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
 gi|303295966|gb|EFL90324.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
          Length = 1248

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 128/328 (39%), Gaps = 32/328 (9%)

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R +  V + + A  LW K+    +++  P + +    N        G + +SN C+E   
Sbjct: 422 RRDGSVVKSVQARELWDKIGNAAWQSADPGLHYNTTMNDWHTCPEAGPIRASNPCSEYMF 481

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               ++TA CNL S+NLL    +++ FD +      R  + VL+  + +     ++  + 
Sbjct: 482 ---LDDTA-CNLASLNLLQFRRDDKSFDVEAFEHATRLWMMVLEISVLMAQFPSKEIAQL 537

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++ +R  GLG       L    IPY S E   +       ++      S E+A+E+G + 
Sbjct: 538 SYDYRTTGLGFANIGGLLMTAGIPYDSDEGRAVCGAITAIMTGICYETSAEMAKEQGPFP 597

Query: 710 SF--------------------KGSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            +                        +D       P+D   L    R    ++  ++  W
Sbjct: 598 GYAPNAEHMARVMRNHRNAAHGNAEGYDALAINPVPLDHASLEGRAR-WAGLSDHAKAAW 656

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D   +     G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 657 DRAVELGNEHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 716

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGN 833
            V E      +DEA I  +  +  ++GN
Sbjct: 717 AVPEALGSLGYDEATIKRMITY--AVGN 742



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG    + G  GKS
Sbjct: 193 HPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYIRGENEPLSG-GGKS 251

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            G++ FLK+ +  A A+  GG  R+ A    ++  H D+E ++D +
Sbjct: 252 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEAYIDWK 297


>gi|7532463|emb|CAB86985.1| aerobic ribonucleotide reductase class Ib [Allochromatium vinosum]
          Length = 173

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 30/176 (17%)

Query: 501 LFSPDEVSDLHDLYGKEF-EIAY-ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           LFSP    D+  +YG+ F EI+  E Y    D   I+  R I+A A ++ +  + FE+G+
Sbjct: 11  LFSP---HDVGRVYGQPFSEISVSEKYAEMVDDRRIRKSR-INARAFFQTLAEIQFESGY 66

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI-----------TLNSSSEETAV-CNLGSIN 606
           P+I F+D     +P    G +  SNLC+EI            L+ S   T + CNLGS+N
Sbjct: 67  PYILFEDAATRANPAG--GRISMSNLCSEILQTNEASLYQEDLSYSRLGTDISCNLGSLN 124

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVL---DNVIDINCHTIEKAKKSNHTHRAIGLG 659
           + A       D     +++  A+R L    N+  I+C  +   ++ N    A+GLG
Sbjct: 125 VAA-----VMDGPDFGASVEAAIRALTAVSNMSAIDC--VPSIRRGNDEAHAVGLG 173


>gi|304314792|ref|YP_003849939.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588251|gb|ADL58626.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 144

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 297 GLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLSSFHF 351
            L++L +RY L +  G  +E P+  F RVA  +A  +      + E    FY+++ +  F
Sbjct: 9   ALKVLEERYLLKNERGEVVETPEEMFRRVARAVASADEMYGFDSYETEELFYSVMRNLEF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF +L+  A++ K  G L + +      G
Sbjct: 69  LPNSPTLMNAGTPINQLSACFVLPVDDSIESIFESLRNMAIIHKSGGALDSHFPDSDQGG 128

Query: 412 AHIH 415
             +H
Sbjct: 129 TPLH 132


>gi|227824829|ref|ZP_03989661.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905328|gb|EEH91246.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 713

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 18/168 (10%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+QVIKR+G   SFD  KI  AI KA  AVE       +   DI       T+   ++  
Sbjct: 5   GMQVIKRDGSTVSFDRHKIVVAIQKANKAVE---EGERLPESDI------DTIASFVEGK 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLK 146
           K    + +EDIQD VE  +M  G +++ + Y++YR  R+ VR A +  +S  + I+ K K
Sbjct: 56  KRKRFL-VEDIQDMVEKQIMNRGRYELAKAYIIYRYNRALVRKANTTDESILSLISNKNK 114

Query: 147 IMMDDGT---LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
            +M++ +    +  +++R ++I  E     +D++ +IVL E     +D
Sbjct: 115 DVMEENSNKNAVMVSTQR-DLIAGEVS---RDLTRRIVLPEKISRAHD 158


>gi|217976380|ref|YP_002360527.1| ribonucleotide-diphosphate reductase subunit alpha [Methylocella
           silvestris BL2]
 gi|217501756|gb|ACK49165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocella silvestris BL2]
          Length = 1230

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG    
Sbjct: 185 TASTSSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGENEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G  GKS G++ FLK+ +  A A+  GG  R+ A    ++  H D+E+++  +
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEDYIQWK 297



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 117/300 (39%), Gaps = 27/300 (9%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K  + + A ALW K+    + +  P + +    N          + +SN C+E       
Sbjct: 426 KAHKVLKARALWEKIGEAAWASADPGLQYHTTINDWHTCPAEAPIVASNPCSEYMF---L 482

Query: 595 EETAVCNLGSINLLA--HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++TA CNL S+NLL          D D     +R    VL+  + +     ++   +++ 
Sbjct: 483 DDTA-CNLASLNLLQFREPVTGAIDIDSYEHAVRLWTIVLEISVMMAQFPSKEIAVNSYR 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    I Y S +   I       ++  + +AS E+A+E GA+  + 
Sbjct: 542 YRTLGLGYANIGGLLMSSGISYDSDQGRAICGAFSAILTGVSYAASAEMARELGAFEGYG 601

Query: 713 GS-------------LWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753
            +               D  VF  +++ +     D        A+   ++  W +     
Sbjct: 602 ANANAMLRVMRNHKRAADGKVFGYEALSIAPVPLDHAALGAFQALGEHAKAAWSQAVALG 661

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
           +  G RN+    +APT TI  +    +  I+P +  +  K    G  F ++N  +   L+
Sbjct: 662 EQHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEGLR 721


>gi|213421653|ref|ZP_03354719.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 152

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  AK+ 
Sbjct: 2   VNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRG 56

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA  
Sbjct: 57  AMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP 116

Query: 710 SFKGSLWDQGVFPIDS 725
            F  + + +G+ PID+
Sbjct: 117 WFNETTYAKGILPIDT 132


>gi|326390979|ref|ZP_08212529.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993021|gb|EGD51463.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 692

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ AI KAF AVE      ++ + D         VT  +++N
Sbjct: 4   AMKVIKRDGREVEFDKIKIANAIYKAFKAVEEGEYKDALEIAD--------EVTEYVENN 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               I  +E IQD VE  L++ GH K  + Y+LYR++  ++R
Sbjct: 56  LEG-IASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQEIR 96


>gi|147678177|ref|YP_001212392.1| anaerobic ribonucleoside triphosphate reductase [Pelotomaculum
           thermopropionicum SI]
 gi|146274274|dbj|BAF60023.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Pelotomaculum thermopropionicum SI]
          Length = 670

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD +KI+ AI KA  AV G+   R   ++  I+      V +LL+   + 
Sbjct: 5   IKKRDGREVPFDETKITDAIFKAARAVGGE--DRQTAMELTIE------VLKLLKKKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  +ED+QD VE  L+++GH +  + Y+LYR++R+ +R A+S
Sbjct: 57  SVFGVEDVQDVVEKVLIEAGHARTAKAYILYRDKRTRIREAKS 99


>gi|126653223|ref|ZP_01725344.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126590054|gb|EAZ84181.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 494

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VP 377
           R A GLA+ E   EKR     +FY  L S  F+ +   ++ +G+       +C++   V 
Sbjct: 138 RNATGLAVVEKTPEKRQEWFEKFYEQLVSLKFIPAGRVIYGAGSETDVTFFNCYVMPFVA 197

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 198 DSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 257

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFL 463
           V QGG R+GA    L  WH D+ EF+
Sbjct: 258 VEQGGSRRGAQMIMLADWHPDIVEFI 283


>gi|20808264|ref|NP_623435.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516863|gb|AAM25039.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 692

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KIS AI KAF AV       ++ + D +    EQ          
Sbjct: 5   MKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEG------ 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  +E IQD VE  L++ G+ K  + Y+LYR++  D+R
Sbjct: 59  ---IASVEQIQDVVEVFLIKRGYAKAAKAYILYRKQHQDIR 96


>gi|218509638|ref|ZP_03507516.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Brasil 5]
          Length = 392

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 41/291 (14%)

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA-----VRV 631
           G +  SN C+E       ++TA CNL S+NLL      QF  DK    I  A     VR+
Sbjct: 7   GPIRGSNPCSEYMF---LDDTA-CNLASLNLL------QFK-DKATKRINIADYEHAVRL 55

Query: 632 LDNVIDINCHTIEKAKKS----NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
              V++++    +   K     ++ +R +GLG       L    IPY S EA  IA    
Sbjct: 56  WTVVLEVSVMMAQFPSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLT 115

Query: 688 EFISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIGLL 729
             ++    + S E+A E G + +F                   G         ID + L+
Sbjct: 116 AIMTGICYATSAEMAAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALI 175

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN 788
                +  +   ++  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  
Sbjct: 176 HSENPDQDLAAHAKSAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFAL 235

Query: 789 LYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  K    G  F ++N  + + L+    + E+ I++++ +    GN+ + P
Sbjct: 236 VKFKKLAGGGYFKIINRAVPDALRTLG-YSESQIAEIEAYAVGHGNLNQAP 285


>gi|213583560|ref|ZP_03365386.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 235

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 22/234 (9%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNY 216
           N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I ++  LI ++ P+Y
Sbjct: 2   NLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDY 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             + AR  +  LR++       +P    HH           + +E G     L E   + 
Sbjct: 62  QYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELGKYDNHLLEDYTEE 110

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETE 334
           +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  ++ V   L      
Sbjct: 111 EFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVVACL-FSNYP 169

Query: 335 KEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGI 383
           +E R      FY+ +S+F     TP +  SG R P  Q SSC L    D L  I
Sbjct: 170 RETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTRQFSSCVLIECGDSLDSI 221


>gi|296133640|ref|YP_003640887.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola sp.
           JR]
 gi|296032218|gb|ADG82986.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola potens
           JR]
          Length = 675

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  F+ +KI+ AI KA  AV G+   R I ++  ++      V + L+   + 
Sbjct: 5   IKKRDGRVVDFNETKITDAIFKAAQAVGGE--DRQIAMELTLE------VLKYLKQKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  +ED+QD VE  L+++GH K  + Y+LYR  R+ +R A+S
Sbjct: 57  QLFSVEDVQDAVEKILIENGHAKTAKAYILYRAHRTRIREARS 99


>gi|193214776|ref|YP_001995975.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088253|gb|ACF13528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroherpeton thalassium ATCC 35110]
          Length = 1966

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF  +   A + K+  G G +++ +R  G  + G  G S 
Sbjct: 178 PQAHACFIQSVQDDLVNEGGIFDLVVREARVFKFGSGTGTNFSNIRAEGEMLSG-GGTSS 236

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++ FLK+ +  A A+  GG  R+ A    +   H D+EEF++ +     +  +   M  
Sbjct: 237 GLMSFLKIFDAAAGAIKSGGTTRRAAKMVIVNIDHPDIEEFIEWKAK---EEEKVAAMVA 293

Query: 482 ANWIPDLFMKRVTQNA 497
            + I   F+K +   A
Sbjct: 294 GSKINSTFLKAILHEA 309



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 599  VCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
             CNL S+NL+ HF N +    D D L    R     L+  + +  +   K  + ++ +R 
Sbjct: 834  ACNLASLNLI-HFVNEKTGDVDTDALRHAARVWTLTLEISVLMAQYPSPKIAQQSYDYRT 892

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF---- 711
            +GLG     S L +   PY SP+A+ +A      ++  A + S E+A + GA+  F    
Sbjct: 893  LGLGFANLGSLLMVSGTPYDSPKALAVAGAISAIMTGEAYATSAEMAADIGAFPKFAHNR 952

Query: 712  ------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                              K    D  V P+     L        + + +   WD   K  
Sbjct: 953  DAMLRVVRNHRHAAHNAPKEDYEDLSVVPMS----LDPAHCPKKLCKVAGETWDRALKLG 1008

Query: 754  KTIGMRNSNCMAIAPTATI 772
            +  G RN+    IAPT  +
Sbjct: 1009 EKHGFRNAQVSVIAPTGCL 1027


>gi|207344318|gb|EDZ71502.1| YIL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 21/177 (11%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +Y G++  +L+     +   +    P+YA + AR  +  L ++      K+  K      
Sbjct: 63  VYSGVTTVELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQTT----KQFSKVIEDLH 118

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVY-----LANDLKYERDFAFEYLGLQILYD 303
             + P         G  A ++ + +  +++V      L + + Y+RDF + Y G + L  
Sbjct: 119 DWINPA-------TGKHAPMISDEI--YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLER 169

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            Y L +NG   E PQ   MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN
Sbjct: 170 SYLLRLNGEVAERPQHLVMRVALGIHGSDIES---VLKTYNLMSLRYFTHASPTLFN 223


>gi|255018949|ref|ZP_05291075.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL F2-515]
          Length = 134

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 35/152 (23%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN+  +A+AP  + A I G + SIDP Y   Y +                  +++D  
Sbjct: 2   GLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE------------------EKKDYR 43

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              +  DL        N+   P         A+++D    +    RRQ+ +DQ+ S N Y
Sbjct: 44  RPVIAPDL--------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFY 91

Query: 877 LDEPSG---KKLDFIYRQAWLMGLKTTYYLRS 905
           +  PSG    KL  ++  AW  GLKTTYY+RS
Sbjct: 92  V--PSGIKASKLLELHMTAWNEGLKTTYYVRS 121


>gi|257792461|ref|YP_003183067.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|317490328|ref|ZP_07948814.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325833526|ref|ZP_08165975.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|257476358|gb|ACV56678.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|316910618|gb|EFV32241.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325485450|gb|EGC87919.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 813

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G +  FD +KIS AI KAF A+E +    +I       +L    VT   +    
Sbjct: 3   EVQKRDGKIAEFDIAKISSAISKAFDALEKQYHPSTI-------DLLALNVTAHFEPRIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A +
Sbjct: 56  NGIISVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNANA 99


>gi|291547169|emb|CBL20277.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           SR1/5]
          Length = 790

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F   KI+ AI KAF   + KG + S  + D++           +++N+ 
Sbjct: 3   QVVKRDGELDEFKMGKITAAIDKAF---DAKGKNYSSDMIDLLGLRVTADFQNKIENNR- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S
Sbjct: 59  ---ISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKS 99


>gi|167579176|ref|ZP_02372050.1| hypothetical protein BthaT_13605 [Burkholderia thailandensis TXDOH]
          Length = 361

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 36/261 (13%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            +  + A  LWR++++   +   P + F D      P +    + + + C    L     
Sbjct: 6   TYASVPARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCGAQPLPPYGS 65

Query: 596 ETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 66  AM----LGAIDL-SRFVRNPFGAGGEPRFDFAGFDTAVRVEVRLLDNALDVTRWPLAAHA 120

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 121 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRNHAYAASAELAAERGA 180

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           Y                    L + +  L A+     LP   +   ++  G+RNS+  + 
Sbjct: 181 YP-------------------LCDRQAHLDALRAGPPLP-HSVCHAIERDGLRNSHLTSF 220

Query: 767 APTATIANICG--VSQSIDPS 785
           AP A ++   G   S  I+P+
Sbjct: 221 APVAGVSLAFGDNCSPGIEPA 241


>gi|293402281|ref|ZP_06646419.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304388|gb|EFE45639.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 790

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G VT FD +KI+ AI +AF +V+ +     I       ++    VT   +    
Sbjct: 3   KVIKRDGKVTDFDIAKITIAITQAFESVQRQYHPSVI-------DMLALRVTSDFEPKIK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +H+EDIQD VE  L+Q+ +  + + Y+LYR++R  +R  +S
Sbjct: 56  EERIHVEDIQDSVEDVLIQADYADVAKSYILYRKQREKIRNMRS 99


>gi|332981657|ref|YP_004463098.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
 gi|332699335|gb|AEE96276.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
          Length = 695

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F  SKI  AI KA  AV   G+ RSI V+     LT++ V  LLQ     + 
Sbjct: 11  KRDGRIVEFQRSKIEDAIFKAAQAV--GGSDRSIAVR-----LTDKVVDMLLQRFDGGM- 62

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +ED+QD VE  L++ G+ +  + Y+LYR++  D+R
Sbjct: 63  PSVEDVQDIVEKVLIEEGYARTAKAYILYRKQHQDIR 99


>gi|332295915|ref|YP_004437838.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
 gi|332179018|gb|AEE14707.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
          Length = 758

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 15/108 (13%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVT 81
           PE +K     KR+G V  FD  +I RAI KAF AV E  GA          K L  +   
Sbjct: 64  PEYVK-----KRDGRVVPFDIFRIERAIAKAFKAVGEHLGAE---------KELAARVSK 109

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +L +  K   +V IE IQD VE  L+++G  K+ + Y+LYR +R + R
Sbjct: 110 KLYRQYKEQEVVDIERIQDVVEEVLIENGFAKVAKAYILYRRKRQEAR 157


>gi|48429400|gb|AAT42468.1| NrdA [Escherichia coli B]
          Length = 182

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +  
Sbjct: 7   YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDT---YKKDL 63

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D +A N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K+
Sbjct: 64  DTIA-NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKA 122

Query: 794 NMSG 797
           +  G
Sbjct: 123 SKDG 126


>gi|188995260|ref|YP_001929512.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594940|dbj|BAG33915.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 798

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 15/161 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTDFA-------RQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKL 145
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+   D R +  H+        K 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
            + + +  + S       M    A    +D +SK +LS  Y
Sbjct: 116 DVNLGNANMSSHTPAGQMMTF--ASEVTKDYASKYLLSLRY 154


>gi|251771782|gb|EES52357.1| Ribonucleotide reductase [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 48/238 (20%)

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E +E+A++ M FI   A   S++LA+  G Y  F+G                      
Sbjct: 2   SEEGLEMAEKVMGFIREEAEKTSLDLAKVHGPYPYFEG---------------------- 39

Query: 736 LAMNRTSRLPWDELKKRVKTIG--MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                               IG   RNS+ + IAPT TI+ I   S   +P +  ++ K+
Sbjct: 40  --------------------IGSPKRNSHLLTIAPTGTISMIADTSSGCEPEFSIIWYKN 79

Query: 794 NMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            M G        +   + +++  W + + + +  + GS   + ++P+  ++  ATA +I 
Sbjct: 80  VMDGTHLPYTLEMFERVARKEGFWSDDLPALIVENHGSCRGLAQVPEKWQRTFATAHDIA 139

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLK--TTYYLRSRS 907
           P W +   +  QK ID A S  + + E +    ++  Y  A+ +G K  T Y   SRS
Sbjct: 140 PEWHVRMQAAFQKHIDAAVSKTINMPETATIGDVENAYMLAYQLGCKGITVYRDGSRS 197


>gi|303257842|ref|ZP_07343852.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
 gi|302859445|gb|EFL82526.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
          Length = 673

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  FD SKI+ A+ KA  A     A+ + R+  I      + + RL Q N + 
Sbjct: 11  VIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHI------EVMNRLAQQNVAT 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               IE IQD VE +L  +G  K  R Y++YRE+R+  R A+
Sbjct: 65  PT--IEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDAR 104


>gi|167748467|ref|ZP_02420594.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
 gi|167652459|gb|EDR96588.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
          Length = 794

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +     I       +L    VT   +     
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPSVI-------DLLALKVTSDFEPKVKN 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S
Sbjct: 57  DVIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKS 99


>gi|34540965|ref|NP_905444.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis W83]
 gi|34397280|gb|AAQ66343.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Porphyromonas gingivalis W83]
          Length = 798

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 15/161 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTDFA-------RQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKL 145
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+   D R +  H+        K 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
            + + +  + S       M    A    +D +SK +LS  Y
Sbjct: 116 DVNLGNANMSSHTPAGQMMTF--ASEVTKDYASKYLLSLRY 154


>gi|317472001|ref|ZP_07931333.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900405|gb|EFV22387.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 794

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +     I       +L    VT   +     
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPSVI-------DLLALKVTSDFEPKVKN 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S
Sbjct: 57  DVIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKS 99


>gi|331000300|ref|ZP_08323983.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
 gi|329572332|gb|EGG53990.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
          Length = 669

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 8/102 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  FD SKI+ A+ KA  A     A+ + R+  I      + + RL Q N + 
Sbjct: 7   VIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHI------EVMNRLAQQNVAT 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               IE IQD VE +L  +G  K  R Y++YRE+R+  R A+
Sbjct: 61  PT--IEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDAR 100


>gi|31745026|dbj|BAC77641.1| probable anaerobic reductase [Porphyromonas gingivalis]
          Length = 794

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 15/161 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTDFA-------RQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKL 145
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+   D R +  H+        K 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
            + + +  + S       M    A    +D +SK +LS  Y
Sbjct: 116 DVNLGNANMSSHTPAGQMMTF--ASEVTKDYASKYLLSLRY 154


>gi|228990451|ref|ZP_04150416.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996552|ref|ZP_04156191.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004202|ref|ZP_04162003.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757063|gb|EEM06307.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763184|gb|EEM12092.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768977|gb|EEM17575.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 221

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RV++  L L   +  K A +
Sbjct: 62  NVAYGENFEFQSYMAASKFYKDYALKTNNQK-QYLESYEDRVSIVSLYLGRGDVNK-AKQ 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
             + + +R  G  I G +  + GV+P +K+  D+    NQ G
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLG 221


>gi|163939259|ref|YP_001644143.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861456|gb|ABY42515.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
          Length = 233

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 131

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 132 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
             + + +R  G  I G +  + GV+P +K+  D+    NQ G
Sbjct: 192 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLG 233


>gi|78188679|ref|YP_379017.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            chlorochromatii CaD3]
 gi|78170878|gb|ABB27974.1| ribonucleotide reductase family protein [Chlorobium chlorochromatii
            CaD3]
          Length = 1513

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 25/262 (9%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC----HTIEKAKKSNHTHRA 655
            CNL S+NL+ HF +      K+ + +R A  +   V++I+        +   + ++  R 
Sbjct: 835  CNLASLNLI-HFVDEASGTIKI-NELRHAASLWTVVLEISVLMAHFPSQTIARLSYDFRT 892

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
            +GLG     + L +L IPY S EA+ +A      ++  A   S E+A++ G +  +  + 
Sbjct: 893  LGLGFANLGTVLMVLGIPYDSAEALAMAGAIASLMTGQAYVTSAEMARDLGTFKRYSDNA 952

Query: 716  WD------------QGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIG 757
             D            Q     D  GL      +     + A+   +   W+E+ ++ +  G
Sbjct: 953  NDMLRVMRNHRRAAQNAATTDYEGLSVIPHGINAAHCQTALAEAAGAVWNEVLQKGEAHG 1012

Query: 758  MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
             RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V++   R  +
Sbjct: 1013 FRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALLRLGY 1072

Query: 817  DEAMISDLKYHDGSIGNIERIP 838
                I D++ +    G +E  P
Sbjct: 1073 SAEQIEDIERYCKGHGTLEGCP 1094



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 63/280 (22%)

Query: 366 PQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S 
Sbjct: 178 PQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTNYSSLRSSGEKLSGGGSSSG 237

Query: 423 GVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKN------------- 468
            ++ FLK+ +  A A+  GG  R+ A    ++  H DVE+F++ +               
Sbjct: 238 -LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASLVAGSR 296

Query: 469 ---------------TGDDRRRTHDMNT------ANWIPDLFMKRVTQ--NAGWTLFSPD 505
                           G DR+    +        +  +P  ++ RV      G+T    +
Sbjct: 297 ICSRFLQAIVEEALANGADRKTNPRLQQLIQNALSRGVPMSYVIRVLALVEQGYTSLDFN 356

Query: 506 EV-----SDLHDLYGKE-----------FEIAYENYE----RQADRGEIKVFRKISAVAL 545
           E      S+ +   G +           F +A  N E    RQ   G  KV R + A  L
Sbjct: 357 EYDTHYESEAYQTVGGQNSNNTVRVTNAFMLAVANDEVWELRQRTTG--KVSRVVKAREL 414

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           W K+L   ++   P + F    N        G +++SN C
Sbjct: 415 WEKILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPC 454


>gi|254453532|ref|ZP_05066969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198267938|gb|EDY92208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 1206

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 126/344 (36%), Gaps = 61/344 (17%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D F+K V  +A W L                            +R   +V + I A  
Sbjct: 378 VTDAFLKAVEDDANWKLI---------------------------NRKNGEVAKVIKARD 410

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW ++    +    P I + D  N        G +  SN C+E       ++TA CNL S
Sbjct: 411 LWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF---LDDTA-CNLAS 466

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NLL  F + +F  +      R     L+  + +     ++  + +   R +GLG     
Sbjct: 467 MNLLKFFKDGEFQVEDYMHASRLWTVTLEISVMMAQFPSKEIAQRSFDFRTLGLGYANIG 526

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------------- 711
             L  +   Y S E   +A      ++  + + S E+A E GA+S +             
Sbjct: 527 GLLMNMGFGYDSDEGRSMAGALTAIMTGVSYATSAEIAGELGAFSGYGRNKDHMLKVIRN 586

Query: 712 -KGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            + + +         D    P+D          ++AM+      WDE  +  +  G RN+
Sbjct: 587 HRNAAYGASDGYEKLDIKPVPLDHANCPDARLIDIAMST-----WDEALRLGEKHGYRNA 641

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVN 803
               IAPT TI  +    +  I+P +  +  K    G  F ++N
Sbjct: 642 QVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 685



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  
Sbjct: 160 TASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRASGES 219

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           + G    S  ++ FLK+ +  A A+  GG  R+ A    ++  H D+EEF++ +
Sbjct: 220 LSGGGKSSG-LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWK 272


>gi|254966981|gb|ACT97524.1| putative ribonucleotide reductase [uncultured organism]
          Length = 279

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 341 EFYNLLSSFHFMCSTP---TLFNSGTRHPQLSSCFLT--TVPDDLYG-IFGALQENAMLA 394
           E + LL  F ++       T   +  +   LS+CF+     P D YG IF   +E   L 
Sbjct: 80  EVFELLDHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRMDEEQVQLM 139

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L  
Sbjct: 140 KRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLTLSI 198

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            H D E F+D + +T     +    N +  I D FM+
Sbjct: 199 KHPDAERFIDAKVDTS----KVTGANVSVKIDDEFMR 231


>gi|167821508|ref|ZP_02453188.1| hypothetical protein Bpse9_40698 [Burkholderia pseudomallei 91]
          Length = 263

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L      
Sbjct: 13  YASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSA 72

Query: 597 TAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    +
Sbjct: 73  M----LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHAR 127

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 128 ESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 187


>gi|229010747|ref|ZP_04167944.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132248|ref|ZP_04261104.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228651186|gb|EEL07165.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750421|gb|EEM00250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 221

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
             + + +R  G  I G +  + GV+P +K+  D+    NQ G
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLG 221


>gi|167899958|ref|ZP_02487359.1| hypothetical protein Bpse7_39915 [Burkholderia pseudomallei 7894]
          Length = 251

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L      
Sbjct: 5   YASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSA 64

Query: 597 TAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    +
Sbjct: 65  M----LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHAR 119

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 120 ESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAY 179


>gi|229166285|ref|ZP_04294044.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617230|gb|EEK74296.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 221

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVE 341
           ++ Y  +F F+ Y+     Y  Y L  N  + +  +++  RVA+  L L   +  K A  
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQK-QYLESYEDRVAIVSLYLGRGDVAK-AKH 119

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           F +++   ++  +TPT  N+G +R  ++ SCFL  + D L  I   +     L+K  GG+
Sbjct: 120 FASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGV 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
             + + +R  G  I G +  + GV+P +K+  D+    NQ G
Sbjct: 180 ALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLG 221


>gi|302386874|ref|YP_003822696.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197502|gb|ADL05073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 788

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG    F  +KI+ AI KAF A + +         + I  L    VT   Q   
Sbjct: 2   IQVVKRNGESAEFSLNKITEAIKKAFKATQKE-------YNNEILELLSLRVTADFQGKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           S   V +E IQD VE  L Q+G+  + + Y+LYR++R  +R
Sbjct: 55  SGGQVTVEQIQDSVEHVLEQAGYTDVAKAYILYRKQREKIR 95


>gi|169335229|ref|ZP_02862422.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257967|gb|EDS71933.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
          Length = 777

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +++KR+G  + ++  KI+ AI KA  A  G+  + +  + D + N+        L    
Sbjct: 3   TEILKRDGRTSRYEKKKITDAIYKAAEAAGGQDYATAKELSDKVDNI--------LNEKY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             ++  +E IQD VE +L++SGH K  + Y+LYR ER+ VR
Sbjct: 55  IDIVPTVEQIQDTVEKTLIESGHAKTAKNYILYRAERNKVR 95


>gi|323701309|ref|ZP_08112984.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533911|gb|EGB23775.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 676

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD +KI+ AI KA  AV G+    ++        LT + V ++L+   + 
Sbjct: 5   IQKRDGRIVPFDETKITEAIFKAAKAVGGEDRQTAM-------ELTLE-VLKMLKKKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  +E++QD VE  L+++GH +  + Y+LYR +R+ +R A+S
Sbjct: 57  NLFGVEEVQDMVEKVLIETGHARTAKAYILYRHQRTRLREAKS 99


>gi|302793899|ref|XP_002978714.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
 gi|300153523|gb|EFJ20161.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
          Length = 90

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFM+RV  N+  +LF P++   L D +G+EFE  Y  Y+++      +  R +S   LW
Sbjct: 1   DLFMERVKSNSDSSLFCPNKAPGLADCWGEEFESLYTRYKKEG-----RAKRSLSGQKLW 55

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +L    ETG+    F    + +S QQ++G +  SNLC
Sbjct: 56  FAILETQMETGN----FLRCEDRKSNQQNLGTIKCSNLC 90


>gi|167744304|ref|ZP_02417078.1| hypothetical protein Bpse14_39918 [Burkholderia pseudomallei 14]
          Length = 287

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L      
Sbjct: 8   YASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYGSA 67

Query: 597 TAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                LG+I+L + F  N        +FD+    + +R  VR+LDN +D+    +    +
Sbjct: 68  M----LGAIDL-SRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHAR 122

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGAY
Sbjct: 123 ESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLCHHAYAASAELAAERGAY 182


>gi|253580121|ref|ZP_04857388.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848640|gb|EES76603.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 792

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G V  F   KI+ AI KAF A E   +   I       +L    VT   Q   +
Sbjct: 3   QVVKRDGEVDEFKIGKITAAIHKAFDAKEKNYSEEMI-------DLLGLRVTSDFQKKIT 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +E+IQD VE  L+Q+G+  + + Y+LYR++R  VR  +S
Sbjct: 56  DNKITVEEIQDSVENVLIQAGYADVAKAYILYRKQREKVRNMKS 99


>gi|302669154|ref|YP_003832304.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396818|gb|ADL35722.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
          Length = 798

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F+ SKIS AI KAF+A++    S  I       +L    V    +   +
Sbjct: 3   QVVKRDGKIADFNISKISSAITKAFIALDKDYHSSVI-------DLIALRVASDFEGKVA 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +E+IQD VE  L ++G+  + + Y+LYR++R  VR   S
Sbjct: 56  DGKITVEEIQDSVEKVLSEAGYTDVAKAYILYRKQREKVRNVNS 99


>gi|167759292|ref|ZP_02431419.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
 gi|167663166|gb|EDS07296.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
          Length = 784

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G V  F  SKI  AI KAF A E +        QDII  L  +         K +L
Sbjct: 1   MKRDGQVAEFTLSKIGVAIEKAFKAQEKE------YNQDIIDLLALKVTADFEPKIKDSL 54

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           I ++EDIQD VE  L+++G+  + + Y+LYR++R  +R   S
Sbjct: 55  I-NVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNS 95


>gi|187251595|ref|YP_001876077.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971755|gb|ACC98740.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 690

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 20/134 (14%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLT 76
           P  E IK   ++KR+G    FD +KI++AI KA        E   +  +IRV +II+ L 
Sbjct: 2   PKSEIIK--NIVKRDGTKQKFDAAKITKAISKAGQVTGEFGEDVASKLTIRVINIIQQLY 59

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +V              +E+IQD VE  L+ S +HK  + Y++YRE+ S +R  + HSK
Sbjct: 60  SDSVPT------------VENIQDIVEDVLLTSNYHKTAKSYIIYREQHSKIR--EIHSK 105

Query: 137 SDAPIAPKLKIMMD 150
            +  +  +    MD
Sbjct: 106 FNVDLVEQYLKKMD 119


>gi|9845337|ref|NP_064151.1| pR45 [Murid herpesvirus 2]
 gi|9800270|gb|AAF99144.1|AF232689_37 pR45 [rat cytomegalovirus Maastricht]
          Length = 1064

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 139/602 (23%), Positives = 223/602 (37%), Gaps = 133/602 (22%)

Query: 408  RGLGAHIHGT-NGKSQGVIPFLKVANDTAVAVNQGG---------KRKGAVCAYL----- 452
            R  G  + GT NG  Q V   L  AN  +V+V             K  G  CA L     
Sbjct: 493  RPRGVAVEGTWNGSMQNVCDLL--ANGVSVSVQLSDLLGDVAGILKSFGLFCASLRDHRR 550

Query: 453  ---------ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG---WT 500
                     + W +D+          G   R   ++  A  +P  F +R  +      W 
Sbjct: 551  FDTKLRVVVDLWSVDLVYAFSFILGEG---RAYPELLYAVNVPQFFWERYVEEGASGRWQ 607

Query: 501  LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK---VFRKISA-VALWRKMLT----- 551
            +F   E   L  +  K F  AYE  E + +   +    V R + A VAL    +      
Sbjct: 608  VFQKSECKSLCRVDEKGFRTAYERLELEGNGLSLSPWWVVRHLDACVALGNTAVVYPYNL 667

Query: 552  ---MLFETGH-----PWITFKDPCNIRSPQQHVGVVHSS--NLCTEITL--NSSSEETAV 599
               M+ ETG      P ++    CN       +GV   +  ++C E  L   S +++ A 
Sbjct: 668  KSAMVGETGRLLLCGPELSLV--CN-----SFLGVFPENKIDVCLENCLLEGSGADDAAA 720

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRV----LDNVIDINCHTIEKAKKSNHTHRA 655
               G + +L H     F +  L   +R AV +    +D VI  N   +  A      +R 
Sbjct: 721  ATEGEVPVLGH--EVFFSFRSLRVLVRDAVVIGNVLMDAVIRDN---VFGAGDVMCLYRP 775

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKG 713
            + L ++GF + L  L + Y    +V +     EF+ + A+ ASV+L    GA  +  F  
Sbjct: 776  LQLRVLGFHAVLGRLGLLYTDDASVLLGRRIAEFVHYAAVRASVDLCVH-GAEPFPKFSR 834

Query: 714  SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTA 770
            SL+  G        L  ++ D+  +  TS LP   W +L++ V   G+RNS  +      
Sbjct: 835  SLFATGR-------LYPDLFDD-PLQETSSLPAGHWAQLREDVVRYGVRNSAFVCGGLGE 886

Query: 771  TIANICGVSQSIDPSYQNLYVK-------------------------------------- 792
              AN+ G +  + P   NL ++                                      
Sbjct: 887  ESANVAGTTPGMFPRAYNLSLEPSPLLAAPRDRCLGEALRVAEDLRLDLPNASDRSLLAL 946

Query: 793  -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
              N      VVN +L    + R +    +   + Y  G    +E   +D   +  T +  
Sbjct: 947  VGNQRVYLPVVNRYLAEIPRSRAV----LAVRMGYAAGLYAGVEEEDEDRASLE-TGWMT 1001

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI---YRQAWLMGLKTTYYLRSRSA 908
                +++ A  RQ ++DQ Q L L+L   SG+ +  +    R+A   GL    Y + R A
Sbjct: 1002 SQEAVLKMAVDRQPYVDQGQGLPLFLG--SGRSMVDVARHLRRAGAAGLGIGLY-KCRVA 1058

Query: 909  TS 910
            +S
Sbjct: 1059 SS 1060


>gi|323486670|ref|ZP_08091991.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
 gi|323400051|gb|EGA92428.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
          Length = 790

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A      +++   Q+I++ L+ + VT   Q   
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKA------TKNDYNQEILELLSLR-VTADFQSKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R
Sbjct: 55  TDGKVSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIR 95


>gi|160941957|ref|ZP_02089280.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435121|gb|EDP12888.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
          Length = 806

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G V  F  +KI+ AI KAF A        S    + I  L    VT   Q+  
Sbjct: 2   IQVVKRDGEVAEFSLNKITEAIKKAFRAT-------SKDYNNEILELLSLRVTADFQNKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S
Sbjct: 55  KDGRISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNS 99


>gi|323692184|ref|ZP_08106427.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503758|gb|EGB19577.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 790

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A      +++   Q+I++ L+ + VT   Q   
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKA------TKNDYNQEILELLSLR-VTADFQSKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R
Sbjct: 55  TDGKVSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIR 95


>gi|213023622|ref|ZP_03338069.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LD ++D   + I  AK+     R +G+G++ F   L      Y+   A  +  ++ E
Sbjct: 1   VRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFE 60

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747
            I ++ + AS ELA+E+GA   F  + + +G+ PID+       +D +  +N      W+
Sbjct: 61  AIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK-----KDLDAIVNEPLHYDWE 115

Query: 748 ELKKRVKTIG 757
           +L++ +KT G
Sbjct: 116 QLRESIKTHG 125


>gi|270717088|ref|ZP_06223220.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
 gi|270315576|gb|EFA27785.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
          Length = 131

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 57/98 (58%)

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR LD ++D   + +  AK+S+   R++G+G++ +   L    + Y+   A ++   + 
Sbjct: 8   AVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTF 67

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
           E I ++ + AS+ LA+E+GA   F  + + +G+ PID+
Sbjct: 68  EAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDT 105


>gi|319941888|ref|ZP_08016209.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804541|gb|EFW01411.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 679

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G V  FD  KI +A++KA +A +   A+R+   ++I++      + RL++H+ 
Sbjct: 7   LHLIKRDGAVRDFDAEKIVQAVVKAGLATQEFDAARA---REIVQTYV---LPRLMKHD- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +A    IE +QD VE  L ++G     R Y++YRE R+  R A+
Sbjct: 60  AARTPTIEWVQDAVEHGLYEAGCFPTLRAYIVYRESRAKARDAK 103


>gi|213420918|ref|ZP_03353984.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH           + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHH---------VVKMVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
                L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           + V   L      +E R      FY+ +S+F     TP +  SG R P +SS 
Sbjct: 174 ILVVACL-FSNYPRETRLDYVKRFYDAVSTFKISLPTPIM--SGVRTPTVSSA 223


>gi|261885165|ref|ZP_06009204.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 74

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 2/50 (4%)

Query: 863 RQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           RQKWIDQ QSLN++  LD+ SG+ L  IY  AW +G+K+TYYLRS S  S
Sbjct: 7   RQKWIDQGQSLNIFMRLDKASGRYLSEIYTLAWELGVKSTYYLRSESPDS 56


>gi|304317367|ref|YP_003852512.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778869|gb|ADL69428.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 692

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    F+  KI+ AI KAF AV+    + ++++ D         VT+ ++ N
Sbjct: 4   AMKVIKRNGMEEEFNKEKIANAIYKAFEAVDEGEYNDALKIAD--------EVTKYIEEN 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 ++E IQD VE  L++ G  K  + Y+LYR++  D+R
Sbjct: 56  FDGY-ANVEQIQDIVEQFLIRGGFAKAAKAYILYRKQHQDMR 96


>gi|283768712|ref|ZP_06341623.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
 gi|283104498|gb|EFC05871.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
          Length = 732

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI +A+ KA  A E    +     +++I+ ++E  V +    N+
Sbjct: 1   MKVIKRSGEEVLFDANKIKKAVQKANEATEVHHQAG----EEVIQQISEGVVAKCKALNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           S   V +E+IQD VE +LM++  +++   Y+ YR ER+ VR A +  K
Sbjct: 57  S---VSVEEIQDMVENALMEAKVYQVAHNYITYRYERALVRKANTTDK 101


>gi|125973164|ref|YP_001037074.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|256003962|ref|ZP_05428948.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281417359|ref|ZP_06248379.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|125713389|gb|ABN51881.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|255992090|gb|EEU02186.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281408761|gb|EFB39019.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|316940607|gb|ADU74641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 1313]
          Length = 696

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G +  + P KI+ AI KA  A    G S   R +++ + + E     +L    
Sbjct: 3   TKISKRDGRIEKYQPEKITWAIFKAATAC---GGSDFGRAEELCRQVNE-----ILNKQF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  +EDIQD VE  L+++GH K  + Y+LYRE+R   R
Sbjct: 55  KDRIPGVEDIQDIVEKVLIENGHAKTAKAYILYREKRKSAR 95


>gi|163816122|ref|ZP_02207490.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
 gi|158448542|gb|EDP25537.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E  K V VIKRNG   +FD SKI  AI+ A   V+        +V  I  NL +Q  +  
Sbjct: 4   EAKKHVHVIKRNGEEVTFDLSKIENAILAANNEVDNLHQLNEYQVHAIADNLEKQIES-- 61

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + H      VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 62  MSH-----AVHVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELARKSNT 106


>gi|323704571|ref|ZP_08116149.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536033|gb|EGB25806.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 692

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K ++VIKRNG    FD +KI+ A+ KAF AV G+G        D +K    + VT  + +
Sbjct: 3   KNMKVIKRNGKEEEFDRAKIANAVNKAFEAV-GEG-----EYNDALK--VAEEVTEYIGN 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           N       +E+IQD VE  L++ G  K  + Y+LYR++  D+R
Sbjct: 55  NFEG-CASVEEIQDIVEQFLIKHGFAKAAKAYILYRKQHQDIR 96


>gi|145638029|ref|ZP_01793660.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
 gi|145268770|gb|EDK08742.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
          Length = 241

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 22/247 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++     +  P +   H  + +  E + + + + 
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKKAYG--HFDPPRLYDHVKKLVRMEKYDQALLDD 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFF 321
              R   ++M  F        + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 123 Y-TREEWDTMDGF--------IDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP--QLSSCFLTTV 376
           + V+  L   +  KE R      FY+  S+F     TP +  +G R P  Q SSC L   
Sbjct: 174 LLVSASL-FSKYPKETRLDYVKRFYDATSTFKISLPTPIM--AGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGI 383
            D L  I
Sbjct: 231 DDSLDSI 237


>gi|134298561|ref|YP_001112057.1| anaerobic ribonucleoside triphosphate reductase [Desulfotomaculum
           reducens MI-1]
 gi|134051261|gb|ABO49232.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 676

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 10/106 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
            +V KR+G   +F+ +KI+ AI +A  AV G+    ++ +  D++K L +Q    L    
Sbjct: 3   TKVRKRDGREVAFNETKITEAIFRAAKAVGGEDRQTAMELTLDVLKMLKKQYNGNLFG-- 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  +E++QD VE  L++SGH +  + Y+LYR +R+ +R A+S
Sbjct: 61  -------VEEVQDMVEKVLIESGHARTAKAYILYRAQRTRLRDARS 99


>gi|254226425|ref|ZP_04920012.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
 gi|125621047|gb|EAZ49394.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
          Length = 232

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 18/221 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTSEELELMEQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTL 358
           ++ VA  L  K   KE R      FY+  S+F     TP +
Sbjct: 173 YILVAACLFAK-YPKETRLDYIKRFYDATSTFKISLPTPIM 212


>gi|239616932|ref|YP_002940254.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505763|gb|ACR79250.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 717

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+ SKI  A+ KAF A +      +    DI++ L  + VT   Q     
Sbjct: 4   VRKRDGSLVEFELSKIILAVKKAFEATD------TAYTDDILERLALR-VTSDFQGKIKE 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            IV IEDIQD VE +L   G +K+ + Y+LYR++R  +R  +S
Sbjct: 57  NIVDIEDIQDSVEKTLEDLGFNKVAKAYILYRKQREKLRNLKS 99


>gi|223983088|ref|ZP_03633286.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
 gi|223964944|gb|EEF69258.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
          Length = 379

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 323 RVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS--SCFLTTVP 377
           RV   LA  ET   ++EK A  F   L   + + +   LF +G+   Q++  +CF+    
Sbjct: 133 RVGTALAEPETDVAQREKYAGLFTEQLKKLNVIPAGRVLFGAGS-GTQVTYFNCFVMPFV 191

Query: 378 DDLYGIFGALQENAM-LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK-VANDTA 435
           +D  G     ++  M +    GG+G + + +R   A   G  G+S G + +L  +AN T 
Sbjct: 192 EDSRGGIAEHRKEVMEIMSRGGGVGTNGSTLRPKHAPAKGVGGRSSGAVSWLNDIANLTN 251

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           + V QGG R+GA    L  WH D+ EF+
Sbjct: 252 L-VEQGGSRRGAQMIMLADWHPDIIEFI 278


>gi|167630139|ref|YP_001680638.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
 gi|167592879|gb|ABZ84627.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
          Length = 712

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  F  SKI+ AI +A  AV G+    ++ +           V + L+   +
Sbjct: 4   QIRKRDGRIVEFHESKITDAIFRAAKAVGGEDKQMAMELT--------LAVLKALKGRYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  +ED+QD VE  L+++GH +  + Y++YR  R+ +R A+S
Sbjct: 56  GNVFSVEDVQDMVEKVLIENGHARTAKAYIIYRNSRTRIRDAKS 99


>gi|114567781|ref|YP_754935.1| anaerobic ribonucleoside triphosphate reductase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338716|gb|ABI69564.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 718

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+  KI++AI KA  AV GK    ++ + D         V  + Q+   
Sbjct: 5   KIKKRDGRIVPFEKEKITKAIWKAAQAVGGKDYQTALDLTD--------KVVEIAQYVDD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I  +E IQD VE  L+++G++K  + Y+LYR++  D+R
Sbjct: 57  DEIATVEGIQDLVERVLVKNGNYKTAKAYILYRKQHEDMR 96


>gi|283796119|ref|ZP_06345272.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|291076335|gb|EFE13699.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
          Length = 898

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  F+ +KI+ AI KAF A   + +      Q+I++ L+ + VT   Q   
Sbjct: 100 INVIKRDGEIADFNLAKITNAIKKAFKATSNEYS------QEILELLSLR-VTADFQPKL 152

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +E+IQD VE  L Q+G+ ++ + Y+LYR++R  +R
Sbjct: 153 KNGKISVEEIQDSVEHVLEQTGYTEVAKAYILYRKQREKIR 193


>gi|197302141|ref|ZP_03167201.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
 gi|197298828|gb|EDY33368.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
          Length = 746

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
           Y   E+  G+++IKRNG    FD +KI +A+ KA +  E +  S   +++DI + +    
Sbjct: 19  YLESEETGGMKIIKRNGSEEVFDINKIIKAVKKADINSEERSLSDG-QIEDIAEYVE--- 74

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                + NK    V +E+IQD VE  +M +G  ++ + YV YR +RS VR A +
Sbjct: 75  ----FKCNKLNRAVSVEEIQDMVENQIMATGAFELAKSYVRYRYKRSLVRKANT 124


>gi|295106152|emb|CBL03695.1| anaerobic ribonucleoside-triphosphate reductase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 813

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G +  FD +KIS AI KAF A+  +    +I       +L    VT   +    
Sbjct: 3   EVQKRDGKIAEFDIAKISSAIAKAFDALGKQYHPSTI-------DLLALNVTAHFEPKIE 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A
Sbjct: 56  DGIITVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNA 97


>gi|95931058|ref|ZP_01313785.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132867|gb|EAT14539.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 662

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  KIS AI KA  AV G+  +++       + +T Q V  L    K  
Sbjct: 5   IRKRDGRLAAFEEGKISEAIKKAVRAVGGQDMTKA-------EEITRQVVGILEIIYKDD 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E++QD VE  L++SGH +  + Y+LYR +   +RA +S
Sbjct: 58  RAPTVENVQDLVEKQLIESGHAQTAKAYILYRRQHEQLRATKS 100


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K  Q+IKR+  ++ F+  KI++AI KA ++VE    S +I +       +E     LL+
Sbjct: 1   MKITQIIKRDALISLFELDKITKAIQKAMLSVENGNKSDAIAI-------SESVNETLLE 53

Query: 86  HNKSA--LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +S    I  +E +QD VE  LM S    + + Y+LYR E++ +R
Sbjct: 54  RKRSEPDYIPTVEQVQDIVEYKLMDSPFQDVAKAYILYRNEQARIR 99


>gi|167037075|ref|YP_001664653.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115490|ref|YP_004185649.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855909|gb|ABY94317.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928581|gb|ADV79266.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 692

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR-SIRVQDIIKNLTEQTVTRLLQH 86
            ++VIKR+G    FD  KI+ AI KAF AV G+G  + ++ + D         VT  +++
Sbjct: 4   AIKVIKRDGREVEFDKIKIANAIYKAFKAV-GEGEYKDALEIAD--------EVTEYVEN 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           N    I  +E IQD VE  L++ G+ K  + Y+LYR++  ++R
Sbjct: 55  NLEG-IASVEQIQDIVEQYLIKHGYAKAAKAYILYRKQHQEIR 96


>gi|239623883|ref|ZP_04666914.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521914|gb|EEQ61780.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 688

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   KIS AI KAF A  GK  +      D I +L    VT   Q     
Sbjct: 4   VVKRDGETVEFQLEKISSAIKKAFKAT-GKSYT------DDIIDLLSIRVTSDFQRKMRD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R
Sbjct: 57  GRISVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIR 95


>gi|150392202|ref|YP_001322251.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
 gi|149952064|gb|ABR50592.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
          Length = 784

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 11/102 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL-LQHN 87
           VQV+KR+G    FD  KI  AI KA MA    G         I +NL+ +    + L+ +
Sbjct: 2   VQVMKRDGRAVFFDSEKIIHAIEKA-MAETTSG---------IDQNLSREIAKTIELEID 51

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           KS   +H+EDIQD VE  LM S    + + Y++YR +RS  R
Sbjct: 52  KSLTSIHVEDIQDIVENLLMDSNRKDVAKRYIIYRNKRSQSR 93


>gi|326204794|ref|ZP_08194648.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985006|gb|EGD45848.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 770

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    ++ + + + +  E ++ R      
Sbjct: 3   TKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAERVADFIESSLDRR----- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  +E++QD VE  L+++GH K  +E++LYR +R+ VR
Sbjct: 58  ---IPSVEELQDAVEKVLIETGHAKTAKEFILYRADRTKVR 95


>gi|169832136|ref|YP_001718118.1| anaerobic ribonucleoside triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638980|gb|ACA60486.1| anaerobic ribonucleoside-triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 709

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  +I+ AI +AF A    G +      D    +T++ +  L   N+  
Sbjct: 5   IKKRDGRIAAFESRRITNAIAQAFKATGEAGWADD----DAAPAVTQRVIEAL--ENRGI 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +E++QD VE SLM+ G+H+  + Y+LYRE+   +R  +S    D
Sbjct: 59  ATPTVEEVQDLVERSLMELGYHRTAKAYILYREQHRQMREMKSLVNCD 106


>gi|239625641|ref|ZP_04668672.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519871|gb|EEQ59737.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 804

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G    F  +KI+ AI KAF A +           + I  L    VT   Q   
Sbjct: 2   IQVVKRDGENAEFSLNKITEAIKKAFKATKKD-------YNNEILELLSLRVTADFQDKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              ++ +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S
Sbjct: 55  KEGMISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNS 99


>gi|330836811|ref|YP_004411452.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
 gi|329748714|gb|AEC02070.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
          Length = 785

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V  +D +KI+RAI+KA   +E  G   +++    + N    T +  L+    +
Sbjct: 5   IVKRDGRVVLYDEAKIARAILKA---MEAAGTPDAVKAAAAVAN----TTSAYLEKKFGS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + IE IQD VE  LM SG+  + + Y+LYR ER+  R   S
Sbjct: 58  ESLPIEGIQDAVETQLMHSGYEDVAKRYILYRAERTRRREMNS 100


>gi|42526839|ref|NP_971937.1| anaerobic ribonucleoside triphosphate reductase [Treponema
           denticola ATCC 35405]
 gi|41817154|gb|AAS11848.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola ATCC 35405]
          Length = 708

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVT 81
           PE ++ V  +KR+G + +++  KI +AI KA  AVEG     +++ + D +    E+ + 
Sbjct: 26  PEILRSV--VKRSGEIEAYNRKKIEQAINKAITAVEGSPNDEKAVFLTDKV----EEKLK 79

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            ++    +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 80  NIMASRYAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|332654657|ref|ZP_08420400.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332516621|gb|EGJ46227.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 793

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G   +F+  KIS AI KAF A++ +     I       +L    VT   +    
Sbjct: 3   QVTKRDGTAATFEIGKISAAITKAFQALDKQFHPSVI-------DLLALRVTADFEPKVR 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L ++G+  + + Y+LYR++R  +R   S
Sbjct: 56  DGRIAVEDIQDSVEAVLSEAGYSDVAKAYILYRKQREKIRNVNS 99


>gi|325473891|gb|EGC77079.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola F0402]
          Length = 708

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 7/112 (6%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVT 81
           PE ++ V  +KR+G + +++  KI +AI KA  AVEG     +++ + D +    E+ + 
Sbjct: 26  PEILRSV--VKRSGEIEAYNRKKIEQAINKAITAVEGSPNDEKAVFLTDKV----EEKLK 79

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            ++    +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 80  NIMASRYAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|303327408|ref|ZP_07357849.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302862348|gb|EFL85281.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 755

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    FD  KI  AI KA  AV G+  S +    D++  +TE+   +L + +   
Sbjct: 9   IMKRDGASVPFDSVKILNAITKANQAVGGEDMSPT----DLL-FVTEKVCRKLDERS--- 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            + H+E+IQD VE +L+Q  + K  + Y+LYR E + +R A+S+
Sbjct: 61  -LRHVEEIQDVVEETLIQYDYAKTAKAYILYRAEHAKIRNAESY 103


>gi|257456079|ref|ZP_05621282.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
 gi|257446537|gb|EEV21577.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
          Length = 698

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+ +KI  AI KA  AV G          D++    E+ +T+L+    + 
Sbjct: 27  VVKRSGDIEVFNRNKIKIAIQKAIEAVTGAADEEK---ADVLTAAVEEKLTQLMASRHAH 83

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            I  IE+IQD +E  L++     I + ++LYR +R  VR A+
Sbjct: 84  SIPAIEEIQDIIENVLIERNEASIAKAFILYRAKREAVRDAE 125


>gi|193214402|ref|YP_001995601.1| anaerobic ribonucleoside triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087879|gb|ACF13154.1| anaerobic ribonucleoside-triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 699

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + +FD  KI+ AI+ A  A    GA  +  + +++ NL  +T+         
Sbjct: 7   QIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTL--------G 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                +E+IQD VE  L+QS + K  + Y+LYR++   +R
Sbjct: 59  EKTPSVEEIQDLVERVLLQSPYMKTAKAYILYRDQHHKIR 98


>gi|162448132|ref|YP_001621264.1| anaerobic ribonucleoside triphosphate reductase [Acholeplasma
           laidlawii PG-8A]
 gi|161986239|gb|ABX81888.1| ribonucleoside-triphosphate reductase, anaerobic [Acholeplasma
           laidlawii PG-8A]
          Length = 762

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 20/109 (18%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           EKIK     KR+G +  F+P KI+ A+ KAF+A+ GK              L ++  T +
Sbjct: 3   EKIK-----KRDGRIVRFNPEKINDAVTKAFIAL-GKDPK-----------LADEVTTGV 45

Query: 84  LQHNKSAL---IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           L    S     I  +EDIQD+VE +L++  +  + + Y++YRE+R+ VR
Sbjct: 46  LNKVDSKFKKQIPTVEDIQDEVERTLIELNYADVAKSYIIYREDRNKVR 94


>gi|220928152|ref|YP_002505061.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulolyticum H10]
 gi|219998480|gb|ACL75081.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulolyticum H10]
          Length = 769

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    ++ + + + +  E ++ R      
Sbjct: 3   TKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAESVVDFIESSLDRK----- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E+IQD VE  L+++GH K  +E++LYR +R+ VR
Sbjct: 58  ---VPSVEEIQDAVEKVLIETGHAKTAKEFILYRADRTKVR 95


>gi|291530822|emb|CBK96407.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum 70/3]
          Length = 787

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVR 97


>gi|167772499|ref|ZP_02444552.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
 gi|167665602|gb|EDS09732.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
          Length = 804

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD  KI+ AI KA  A+ G          ++ K L  Q V   L      
Sbjct: 36  IIKRDGRCVLFDADKIASAIFKAAQALGGND-------YEMAKALAGQ-VASYLDEQYGD 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +E IQD VE +L++SGH +  +EY+LYR +R+ VR
Sbjct: 88  ESPSVEQIQDAVERTLVESGHARTAKEYILYRAQRTRVR 126


>gi|167750480|ref|ZP_02422607.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
 gi|167656631|gb|EDS00761.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
          Length = 787

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVR 97


>gi|291557671|emb|CBL34788.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 787

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVR 97


>gi|896309|gb|AAA69767.1| unknown protein [Mamestra brassicae MNPV]
          Length = 216

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 28/224 (12%)

Query: 151 DGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG L   +S +L   +   C  L  Q V  + V  +  K + D  +  D++      + T
Sbjct: 7   DGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYAASVAAT 66

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L  K  +Y  +  R L+  + + V                     E F + ++E  K  L
Sbjct: 67  LTYKHYDYDTLAGRLLVTNMHKYV--------------------DESFTKVVQELHKHNL 106

Query: 269 LHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           + + ++   + +   +  ++  + D  + Y G Q L + Y + IN    E  Q   MR+A
Sbjct: 107 VSDELLSVTIKHSKIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAETIQHMHMRIA 166

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G+   + +    A++ Y  LS   +  ++PT+F +GT  PQ S
Sbjct: 167 LGIFGDDIDS---AIKSYKFLSRKMYTHASPTMFAAGTLTPQTS 207


>gi|257064524|ref|YP_003144196.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256792177|gb|ACV22847.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 816

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F   KIS AI KAF A+  +     I +  I  ++T     +++     
Sbjct: 3   QVVKRDGKIVDFSIDKISVAITKAFDALNKQYHPSVIEL--IALHVTSDFEDKIVDDK-- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + +EDIQD VE  L +SG+  + + Y+LYR +R  VR   S
Sbjct: 59  ---ITVEDIQDSVEKVLSESGYADVAKAYILYRRQREKVRNVNS 99


>gi|83590293|ref|YP_430302.1| anaerobic ribonucleoside triphosphate reductase [Moorella
           thermoacetica ATCC 39073]
 gi|83573207|gb|ABC19759.1| Ribonucleoside-triphosphate reductase, anaerobic [Moorella
           thermoacetica ATCC 39073]
          Length = 705

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD  +I  AI KA  AV G+   ++ ++ +         VT LL     
Sbjct: 5   KIIKRDGRVVDFDEERIINAIYKAAQAVGGQDRRQASQLAN--------QVTALLAEKFV 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +ED+QD VE  L+++GH +  + Y+LYR++ ++ R
Sbjct: 57  DRLPTVEDVQDLVEKVLIENGHARTAKAYILYRQQHAEWR 96


>gi|4996016|dbj|BAA78249.1| ribonucleotide reductase large sub-unit [Human herpesvirus 6B]
          Length = 804

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 140/363 (38%), Gaps = 51/363 (14%)

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQNAGWTLFSPDEVS 508
            Y+E WH+    +LDL +   +  R T  +     IP +FM R   + A W+LF  +   
Sbjct: 301 VYVEVWHVSALTWLDLYQVLPETSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNIAF 356

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+    
Sbjct: 357 ELGKCDEVTFSTKYLEFERTTDHA------KITMASFVEKICRCL-KRGRMGLIFRKNVY 409

Query: 569 IRSPQQHV------------GVVHSSNLCTEITLN--------SSSEETAVCNLGSINLL 608
             S   HV             V    N C  + LN         S E T    +  + L 
Sbjct: 410 QYSMIPHVPLYCGGDFLDVLPVRDGINTCLRMLLNVVHFLGDEVSDELTE--EIDFVRLQ 467

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
             F    F +++L   +R  V V + VID      +  ++     R++G+ + G  S   
Sbjct: 468 CKF----FMFNELRRVVRKMVLVANAVIDYAVENKDFLREGIVDGRSLGICITGLHSVFM 523

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + + YA P+A  +     E I +  +  SV+    +GA      +L+D+  +   ++G+
Sbjct: 524 TVGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCM-KGAEPC---NLFDRSKY---ALGM 576

Query: 729 LAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           L    D+   N    LP   W  L+K V   G+RN +  A        +I   S+S  P 
Sbjct: 577 LY--FDQFD-NVECTLPEELWTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPM 633

Query: 786 YQN 788
             N
Sbjct: 634 EDN 636


>gi|320537091|ref|ZP_08037066.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
 gi|320146058|gb|EFW37699.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
          Length = 702

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVE-GKGASRSIRV-QDIIKNLTEQTVTRLLQHNK 88
           V+KR+G + +F+ +KI+ AI KA  A E  +   ++ R+ + +I+NL        L    
Sbjct: 33  VVKRSGEIQAFNKNKITAAISKAITAAEWAENPEKAERLTEKVIENLK-----TFLSGRH 87

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +  I  IE+IQD VE +L+      I + Y+LYR +R  VR AQ
Sbjct: 88  ANSIPAIEEIQDTVETTLIAENEAPIAKAYILYRAKREAVRNAQ 131


>gi|219666419|ref|YP_002456854.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
 gi|219536679|gb|ACL18418.1| anaerobic ribonucleoside-triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
          Length = 789

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    S+        L  + V   L+ N 
Sbjct: 3   TKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSL--------LLAEEVVNYLEVNL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR
Sbjct: 55  HKKVPSVEEIQDAVEKILIERGHARTAKEFILYRAERTRVR 95


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT--VTRLLQHN 87
            V KR+G V +F   KI  AI KA  A +           D + N++++   V   ++H 
Sbjct: 5   HVTKRDGSVKTFKIDKIKVAIHKAMQAADSGNL-------DDVDNISQKVLDVIESIKHT 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            S  I  IE IQ+ VE  LM SG HK+ + Y+LYR E S  R
Sbjct: 58  DSRYIPSIEGIQNIVEEQLMGSGFHKVAKAYILYRNEHSKDR 99


>gi|329769428|ref|ZP_08260841.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
 gi|328838998|gb|EGF88589.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
          Length = 294

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 8/100 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           IK + VIKR+G V  FDP KI +AI KA   V G+    S+ + +I+  +  +   R   
Sbjct: 18  IKNLLVIKRDGRVVKFDPDKIYKAIEKAVFKVFGE--KHSVNIDNIVDKVILEISNRFKD 75

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           +      + I ++Q+ VE +L+ SG   I  EYV YR +R
Sbjct: 76  N------IKIYEVQNIVEHTLLTSGEEAIYEEYVGYRSKR 109


>gi|210621578|ref|ZP_03292714.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
 gi|210154701|gb|EEA85707.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
          Length = 788

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + KR+G    F+ +KI+RAI  A   V  K G +   ++ +   +LT Q V  LL+    
Sbjct: 5   IKKRDGRTIPFNENKITRAIFLAASDVAKKEGKAPDFKMAE---DLT-QEVIALLERRFG 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  +ED+QD V   L+++GH K + EY+LYR ER+ VR +++
Sbjct: 61  EEVPSVEDVQDAVVKVLIETGHAKTSEEYILYRAERTRVRNSKT 104


>gi|328480219|gb|EGF49143.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 190

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 501 LFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           LFSP  V      YGK F      + Y++     +IK + KI A  L  ++  +  E+G+
Sbjct: 2   LFSPYSVERA---YGKPFSYVDITKEYDKMVANPDIKKY-KIKARDLENEISKLQQESGY 57

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEIT-------LNSSSEETAV-----CNLGSIN 606
           P+I   D  N  +P +  G +  SNLC+EI        LN+  E   +     CNLGS N
Sbjct: 58  PYIINIDTANRANPIE--GKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTN 115

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +  F +     ++   VR L  V D  N   +   +  NH   +IGLG MG  +
Sbjct: 116 IPNLMHSRDFGH-----SVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHT 170

Query: 666 AL 667
            L
Sbjct: 171 YL 172


>gi|9633099|ref|NP_050209.1| large ribonuclease reductase [Human herpesvirus 6]
 gi|82007175|sp|Q9QJ39|RIR1_HHV6Z RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|5733539|gb|AAD49642.1|AF157706_39 U28 [Human herpesvirus 6B]
          Length = 804

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 140/363 (38%), Gaps = 51/363 (14%)

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQNAGWTLFSPDEVS 508
            Y+E WH+    +LDL +   +  R T  +     IP +FM R   + A W+LF  +   
Sbjct: 301 VYVEVWHVSALTWLDLYQVLPETSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNIAF 356

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+    
Sbjct: 357 ELGKCDEVTFSTKYLEFERTTDHA------KITMASFVEKICRCL-KRGRMGLIFRKNVY 409

Query: 569 IRSPQQHV------------GVVHSSNLCTEITLN--------SSSEETAVCNLGSINLL 608
             S   HV             V    N C  + LN         S E T    +  + L 
Sbjct: 410 QYSMIPHVPLYCGGDFLDVLPVRDGINTCLRMLLNVVHFLGDEVSDELTE--EIDFVRLQ 467

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
             F    F +++L   +R  V V + VID      +  ++     R++G+ + G  S   
Sbjct: 468 CKF----FMFNELRRVVRKMVLVANAVIDYAVDNKDFLREGIVDGRSLGICITGLHSVFM 523

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + + YA P+A  +     E I +  +  SV+    +GA      +L+D+  +   ++G+
Sbjct: 524 TVGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCM-KGAEPC---NLFDRSKY---ALGM 576

Query: 729 LAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           L    D+   N    LP   W  L+K V   G+RN +  A        +I   S+S  P 
Sbjct: 577 LY--FDQFD-NVECTLPEELWTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPM 633

Query: 786 YQN 788
             N
Sbjct: 634 EDN 636


>gi|89893143|ref|YP_516630.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense Y51]
 gi|89332591|dbj|BAE82186.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 789

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    S+        L  + V   L+ N 
Sbjct: 3   TKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSL--------LLAEEVVNYLEVNL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR
Sbjct: 55  HKKVPSVEEIQDAVEKILIERGHARTAQEFILYRAERTRVR 95


>gi|317052449|ref|YP_004113565.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
 gi|316947533|gb|ADU67009.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
          Length = 688

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+ AI KA  +V G         ++I   L+ Q +  L+      
Sbjct: 5   VMKRDGRFVPFDQERIATAIFKAARSVGGSD-------RNIASALSLQVLRALVDQYGQY 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               +E +QD VE  L++ GH K  + Y++YR +R+D+RA
Sbjct: 58  GSCTVEQVQDCVEKVLIEGGHAKTAKAYIIYRHQRADMRA 97


>gi|294102547|ref|YP_003554405.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
 gi|293617527|gb|ADE57681.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
          Length = 678

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD SKI+ A+MKA  AV+ +         ++ + +T Q V+ L    K 
Sbjct: 4   RIRKRDGHEVPFDESKITTAVMKAAKAVDHQNP------MEVGQEITRQIVSLLEIFYKE 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +E +QD VE  L++ G+  I + Y+LYRE+ + +R
Sbjct: 58  EGVPTVEQVQDLVEKILIEKGYASIAKAYILYREQHAKMR 97


>gi|238577950|ref|XP_002388548.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
 gi|215449937|gb|EEB89478.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
          Length = 267

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 23/123 (18%)

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VV  +L+ +L    LWD+ M + +  H+GS+ NI  IPD++K I+ T +E          
Sbjct: 1   VVCPWLLRDLVDLGLWDDNMKNMIIAHNGSVQNIPNIPDNVKAIYKTVWE---------- 50

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT-----SVEKS 914
                 I Q + L+L  D   G  L  ++   W  GLKT  YYLR+R A      +V++S
Sbjct: 51  ------ISQKKVLDLAADR-GGLHLPDMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQS 103

Query: 915 TLK 917
            LK
Sbjct: 104 VLK 106


>gi|310658265|ref|YP_003935986.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii DSM 519]
 gi|308825043|emb|CBH21081.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii]
          Length = 782

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +V KR+G +  F+P KI+RAI  A   V  K G +   +   I   LTE+ V +LL    
Sbjct: 4   KVKKRDGRLIPFNPEKITRAIFLAASEVANKEGITADYQ---IASELTEE-VRKLLNRKF 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           +  I  +EDIQD V   L+++GH K +  Y+LYR E
Sbjct: 60  AGKIPSVEDIQDAVTKVLIETGHAKTSETYILYRAE 95


>gi|282855510|ref|ZP_06264829.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
 gi|282586653|gb|EFB91902.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
          Length = 794

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + KR+G +  F+  +I+RAI  A  AV E +G +   R   I + LT Q V RL +   S
Sbjct: 5   IKKRDGRLAPFNEDRITRAIFLAASAVAEKEGTAADYR---IAEGLTSQVVRRLNEKYAS 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                +ED+QD V   L+++GH + +  Y+ YR ER+ VR   SH++
Sbjct: 62  G-SPSVEDVQDMVVKVLIENGHARTSEAYITYRNERTRVR--DSHTR 105


>gi|225419681|ref|ZP_03761984.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
 gi|225041666|gb|EEG51912.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 13/102 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT---RLLQHN 87
           V+KR+G +  F   KI+ AI KAF A +           DI++ L+ +  +   + +Q N
Sbjct: 4   VVKRDGEIVEFCLEKITMAIQKAFKATD------KFYTDDILELLSIRVTSDFQKKIQEN 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + A    +EDIQD VE  L +SG+  + + Y+LYR++R  +R
Sbjct: 58  RIA----VEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIR 95


>gi|303249443|ref|ZP_07335662.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302489154|gb|EFL49127.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 724

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           ++ A   +A   P +IK     KR+G V  FD  KI  AI +A       GA+     + 
Sbjct: 20  EQPASARVAVAVPARIK-----KRDGKVVPFDADKIFSAIRRA-------GAATGDFDES 67

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + LT Q V ++L H  +  I  IE IQD VE +L+ + H +  R Y +YRE+R+ +R
Sbjct: 68  EARLLTAQAV-KVLSHRFAGQIPDIERIQDVVEQALISANHFRTMRAYSVYREQRAKLR 125


>gi|282851877|ref|ZP_06261238.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556977|gb|EFB62578.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 114

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           I   +IEK  K+N   RAIGLG M     L   HI Y SPEAVE        I++HA   
Sbjct: 4   IRAPSIEKGNKAN---RAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKE 60

Query: 698 SVELAQERGAYSSFKGSLWDQG 719
           S +LA+  GA+  FK S +  G
Sbjct: 61  SNKLAETYGAFKGFKDSSYASG 82


>gi|90408371|ref|ZP_01216534.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
 gi|90310534|gb|EAS38656.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
          Length = 705

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 12/108 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I+ AI+KA         S + R +D+      + V   LQ  K  
Sbjct: 5   VIKRDGSQVPFNALRIAEAILKA---------SGAARCKDVDAFAIAKEVELRLQGQKE- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE SLM+SGH ++ R Y+ YR +R   R  +S   S+
Sbjct: 55  --VDIHHIQDAVEASLMKSGHIELARVYIEYRHDRDIARERKSQLNSE 100


>gi|51874250|ref|YP_073768.1| ribonucleotide reductase subunit 1 [Human herpesvirus 7]
 gi|1710387|sp|P50641|RIR1_HHV7J RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|1139630|gb|AAC54690.1| ribonucleotide reductase, large subunit [Human herpesvirus 7]
 gi|2746258|gb|AAC40742.1| U28 [Human herpesvirus 7]
          Length = 806

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 146/365 (40%), Gaps = 38/365 (10%)

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQN 496
           V +   +   +  YLE WH+ +  +LD      +    T  +     +P++FM+R+ T+N
Sbjct: 289 VEKDTNKTTGLTIYLEIWHLSLLMWLDF----CEILPTTVQVKFCLILPEIFMERLKTEN 344

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV--ALWRKMLTMLF 554
           + W++F      +L      +F   Y   ER A+   IK    +  +   L R  +  +F
Sbjct: 345 SYWSVFHKALAINLGLYDESDFTSKYLECERTAEHARIKTETLLDNICRCLRRGQMGFIF 404

Query: 555 ETG-HPWITFKDPCN--IRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGS 604
               H +       +  + +    +   +  N    I L       N S E+ +  N+  
Sbjct: 405 RKNIHKYSMLPQIASYCLGNSMDVIPFEYGLNTAFRIALNLSYFVENVSEEQKSHTNID- 463

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
              + H+ +  F+  K+  T+   V + + VID      +         R++ + + G  
Sbjct: 464 ---MFHYRDKIFNLKKMRKTVTELVLIGNAVIDYALENRDFLMDGIVNARSLAICVTGLH 520

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA--YSSFKGSLWDQGVFP 722
           SAL  +++P+ S    ++     E I + ++  S+   + +GA   S F+ S + QG+  
Sbjct: 521 SALMSMNLPFNSQLGCQLYRIVCENIYYSSVRTSMNCCK-KGAEPCSFFQRSKYAQGILH 579

Query: 723 IDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            D           L  N    LP   W  L+  +K  G+RN   ++ +  +   ++   S
Sbjct: 580 CD-----------LYDNVEYTLPNVLWTNLRSDIKKYGLRNLTFVSGSAMSKEFDLLNCS 628

Query: 780 QSIDP 784
           QS  P
Sbjct: 629 QSFCP 633


>gi|303239827|ref|ZP_07326350.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302592537|gb|EFL62262.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 696

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG    F P KI+ AI KA  A  G   +++  +   + +L E T           
Sbjct: 5   IIKRNGREEKFQPEKITWAIFKAASACGGDDFTKAEGICRQVMDLAELTY--------KD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +E+IQD VE  L+++GH K  + ++LYRE+R   R
Sbjct: 57  TTPTVEEIQDTVEKVLIENGHAKTAKAFILYREKRKSAR 95


>gi|183221073|ref|YP_001839069.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911167|ref|YP_001962722.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775843|gb|ABZ94144.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779495|gb|ABZ97793.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 1208

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 35/309 (11%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           D  E K  + + A  LW ++    + +  P   +    N        G +++SN C+E  
Sbjct: 433 DGREPKAAKTLRARDLWERIANAAWNSADPGTQYHSTINEWHTCPEDGAINASNPCSEYM 492

Query: 590 LNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
              ++     CNL S NL+     +  FD +      +    +L+  + +     ++  +
Sbjct: 493 FLDNT----ACNLASANLVKFLKEDGTFDVEGYRYLNKIWTIILEISVLMAQFPSKEIAE 548

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE---- 704
            ++  R +GLG     S L ++ IPY S EA+ +       +   A + S E+A+E    
Sbjct: 549 LSYKFRTLGLGYANLGSLLMIMGIPYDSQEAMAVTGAISSIMHMTAYATSAEMAKELGPF 608

Query: 705 ------------------RGAYSSFKGSLWDQGVFPID-SIGLLAEVRDELAMNRTSRLP 745
                             R AY++ K       + P+  +   L     E A   + R  
Sbjct: 609 AGYEKNKNHMLRVIRNHRRAAYNAPKEEYEGLTITPVGINPSFLPSYLLEAAKEDSDRAL 668

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803
             EL ++    G RN+    IAPT TI  +    +  I+P +  + Y K    G F ++N
Sbjct: 669 --ELGEQY---GYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKYKKLAGGGYFKIIN 723

Query: 804 SFLVNELKQ 812
             +   LK+
Sbjct: 724 QSVPAALKK 732



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R         
Sbjct: 189 SSYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRAAN-ESLSG 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  GG  R+ A    L+  H D+EEF+D +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDMDHPDIEEFIDWK 297


>gi|225388054|ref|ZP_03757778.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
 gi|225045907|gb|EEG56153.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  +KI+ AI KAF A +           + I  L    VT   Q   
Sbjct: 2   IEVVKRDGEIAEFSLNKITEAIKKAFKATKKD-------YNNEILELLSLRVTADFQGKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S
Sbjct: 55  TEGRISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNS 99


>gi|107101355|ref|ZP_01365273.1| hypothetical protein PaerPA_01002390 [Pseudomonas aeruginosa PACS2]
          Length = 675

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +     
Sbjct: 13  LLKRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER---- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + IE +QD VE  LM++GH+   R YV+YRE    +R
Sbjct: 62  ACLDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLR 100


>gi|15597116|ref|NP_250610.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAO1]
 gi|218892122|ref|YP_002440989.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa LESB58]
 gi|254235012|ref|ZP_04928335.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296389671|ref|ZP_06879146.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAb1]
 gi|9947914|gb|AAG05308.1|AE004618_2 class III (anaerobic) ribonucleoside-triphosphate reductase
           subunit, NrdD [Pseudomonas aeruginosa PAO1]
 gi|126166943|gb|EAZ52454.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772348|emb|CAW28130.1| putative ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
          Length = 675

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +     
Sbjct: 13  LLKRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER---- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + IE +QD VE  LM++GH+   R YV+YRE    +R
Sbjct: 62  ACLDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLR 100


>gi|116049873|ref|YP_791318.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313111346|ref|ZP_07797161.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|115585094|gb|ABJ11109.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310883663|gb|EFQ42257.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 675

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +     
Sbjct: 13  LLKRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER---- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + IE +QD VE  LM++GH+   R YV+YRE    +R
Sbjct: 62  ACLDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLR 100


>gi|295093550|emb|CBK82641.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus sp.
           ART55/1]
          Length = 708

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   ++D SKI  AI KA   VE        ++++I+ ++  +   R+L    
Sbjct: 1   MQVIKRDGRAVTYDRSKIILAIQKANSEVEPCEKISDEKIEEIVGSIEAKNRKRML---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S
Sbjct: 57  ------VEDIQDIIEQGLMADGKFVLAKTYIIYRYSRELIRKANTTDDS 99


>gi|310829195|ref|YP_003961552.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
 gi|308740929|gb|ADO38589.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
          Length = 774

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 17/108 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKRNG V  FD  KIS AI KA ++V G+             ++TE+ +  L     S
Sbjct: 4   NIIKRNGTVAPFDTRKISSAIYKANISVNGE-------------SMTEKHIEFLTNVVTS 50

Query: 90  A----LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           A    +   +E IQD VE +L+++ + K  + Y+LYR E +  R A+S
Sbjct: 51  AAEPLVCPTVEQIQDIVEETLIKADYAKTAKAYILYRAEHAKTRQAES 98


>gi|312114579|ref|YP_004012175.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219708|gb|ADP71076.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 685

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G +  FD +KI  A+ +A  A     A+ +        +L      +++ H  
Sbjct: 18  LSIVKRSGALAPFDAAKIRSAVERAGRATGDFDATEA--------HLLAIQAVKVIAHRF 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++   HIE+IQD VE  L+ + H    R Y++YRE+R+ +RA
Sbjct: 70  ASRSPHIEEIQDIVEQVLISANHFATARAYIVYREQRARLRA 111


>gi|316934448|ref|YP_004109430.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
 gi|315602162|gb|ADU44697.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
          Length = 673

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD +KI  AI +A  A    G   +         LT Q+V +++ H  + 
Sbjct: 13  IIKRSGAEAAFDSTKIRSAIARAGQATGAFGELEA-------GLLTSQSV-KVIAHRFAG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +  IE +QD VE  L+ + H    R Y++YRE+RS  R+
Sbjct: 65  AVPQIEQVQDIVEQVLISANHLTTARAYIVYREKRSQARS 104


>gi|134094879|ref|YP_001099954.1| anaerobic ribonucleoside triphosphate reductase [Herminiimonas
           arsenicoxydans]
 gi|133738782|emb|CAL61829.1| anaerobic class III ribonucleotide reductase NrdD [Herminiimonas
           arsenicoxydans]
          Length = 673

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 10/102 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT-VTRLLQHN 87
             V+KR+G +  FD  KI  A+++A +A     A        + KNL+ +  + R+  H 
Sbjct: 10  THVVKRDGSIKPFDAGKIESALLRAGLASGEFDAG-------VAKNLSARVALARISFHE 62

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +   + HIE IQD VE  L  +G+ K  R Y +YRE+   +R
Sbjct: 63  QD--VPHIEQIQDAVETVLFDTGYRKTLRAYTVYREQHQKLR 102


>gi|260885728|ref|ZP_05897138.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
 gi|260852077|gb|EEX71946.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
          Length = 727

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 24/120 (20%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF ++               + +  Q + R+++H +  
Sbjct: 33  ITKRDGTTERFSLDKIKSAILKAFTSLH--------------QPIDAQGLQRVIEHLRFC 78

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQ+QVE +LM   H K+ + ++LYR++ ++          D  +A +L  M D
Sbjct: 79  NGMSVEDIQNQVEVALMAEKHFKVAKAFMLYRQQHTE----------DRDVAERLSFMFD 128


>gi|312144556|ref|YP_003996002.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
 gi|311905207|gb|ADQ15648.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
          Length = 1076

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 7/99 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG    F+  KI  A++KA  AVE    S + ++ D I     + ++ L    K  
Sbjct: 6   VKKRNGKKVDFNSDKIKAAVIKAAEAVE----SNNDKIGDEI---CSEVISYLKIFFKDG 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            IV +E IQD VE  L++ G+  + + Y+LYRE+ S +R
Sbjct: 59  GIVEVEQIQDLVEKVLIEKGYADVAKAYILYREQHSKLR 97


>gi|187251462|ref|YP_001875944.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971622|gb|ACC98607.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 746

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 9/107 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + + KR+G +  +D  KI+ AI+K+  A   + A+ + R+ + + N        L + 
Sbjct: 5   KVLTITKRDGRIVLYDEKKIANAILKSLAATGQEDAAAAARLANEVGNT-------LAEK 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            K      IEDIQD+VE +LM +G+ +  + Y+LYR +R+ VR + +
Sbjct: 58  GKDNYF--IEDIQDEVERALMHNGYEETAKSYILYRAKRTRVRESNT 102


>gi|265763466|ref|ZP_06092034.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|263256074|gb|EEZ27420.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
          Length = 733

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF        S+ +     I     ++V +L+    
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAF-------DSKQVEYDPAIV----KSVDKLISLTY 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + + V +E IQD VE  LMQ G++ I + ++LYRE+R   R
Sbjct: 50  TNVPVSVETIQDYVERVLMQFGYYDIAKTFILYREQRKSTR 90


>gi|319645698|ref|ZP_07999929.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392245|gb|EFV73041.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  + EK K   EF +L+    +  STPT  N+G  R  ++ SCFL  V D L  
Sbjct: 126 VALFFANGDAEKAK---EFTSLMMKQEYQPSTPTFLNAGRKRRGEMVSCFLLEVNDSLND 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 183 ISRAVDISMQLSKLGGGVALNLSKIRAKGEPIKKVENATKGVVGVMKLLDNAFRYADQMG 242


>gi|153814148|ref|ZP_01966816.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|317499950|ref|ZP_07958186.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087827|ref|ZP_08336752.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848544|gb|EDK25462.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|316898667|gb|EFV20702.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409522|gb|EGG88963.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 719

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  A+ KA  + EG+  + S +++DI + +         + NK
Sbjct: 1   MKIIKRNGAEEVFDIKKIVIAVTKADSSSEGRSLTDS-QIEDIAEFVE-------FKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQD VE  +M +G  ++ + YV YR +RS VR A +
Sbjct: 53  LNRAVSVEEIQDLVEDQIMATGAFELAKRYVRYRYKRSLVRKANT 97


>gi|294674062|ref|YP_003574678.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294471904|gb|ADE81293.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 701

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V+ + A  +I             V+++L
Sbjct: 2   EIKNFTITKRDGSKDLFSLDKIMNAIVKAFESVQ-EPADLAI-------------VSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            H      + +EDIQ+QVE +LM+ G++K+ + ++LYR+  S+ R
Sbjct: 48  NHLDMHDNITVEDIQNQVEEALMREGYYKVAKSFILYRQLHSEDR 92


>gi|260590774|ref|ZP_05856232.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
 gi|260537260|gb|EEX19877.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
          Length = 713

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 14/104 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KRNG    F   KI  AI+KAF +V            DI   +  + ++ L  
Sbjct: 1   MKNFTITKRNGDKVPFSLDKIMNAIVKAFQSVN--------EPTDI--GIVSRILSDLDI 50

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           HN     + +EDIQ+QVE +LM+ G++K+ + +++YR++ ++ R
Sbjct: 51  HND----IKVEDIQNQVEFALMKEGYYKVAKSFIVYRQQHTEDR 90


>gi|182682908|ref|YP_001837032.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
 gi|182630620|gb|ACB97552.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
          Length = 409

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 133/363 (36%), Gaps = 48/363 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           + ++RD  F   GL+  +D+Y       G   E PQ  +M +AM +  +       A++ 
Sbjct: 17  IDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYMGMAMAMLSQPNWTILDAIDL 76

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           YN +S       TP L    +     +SC L    D L  I  A      +     G+G 
Sbjct: 77  YNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDSIDTAEHIVFKMVAARAGIGY 136

Query: 403 DWT------PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
                    PVR  GA  H       G +P+ +   D +V  N    R G+       + 
Sbjct: 137 HLESRSIADPVRN-GAFPHS------GKLPYYRHI-DRSVKANTQQTRGGSATVSYPYFD 188

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            ++ + + +++    D  +   M+ +    +L +KR  +N   TL S     ++H+ +  
Sbjct: 189 PEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLMSYFYAPEVHEAFYG 248

Query: 517 EFEIAYENYERQADR------------GEIKVFRKISAVALWRKMLTMLFETGHPWI--- 561
           E E  +E     A++              I    +ISA  +    L +  ETG  +    
Sbjct: 249 EDEAKFEEIYVAAEKRVASLTKIDHEGKTIPAAPRISAKEILDTWLRIRMETGRMYAHHI 308

Query: 562 -------TFKDPCNIRS----------PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
                   F DP  + +          P  HV  ++ +    +        E ++CNLG 
Sbjct: 309 GESNRHGNFLDPIRMTNPFVLNYSATRPFHHVTELYKTQDQLDDMRPEDIGEVSLCNLGG 368

Query: 605 INL 607
           + L
Sbjct: 369 VVL 371


>gi|281426110|ref|ZP_06257023.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
 gi|281399686|gb|EFB30517.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
          Length = 740

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E KG   +         L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTE-KGEDDA---------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|284048540|ref|YP_003398879.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952761|gb|ADB47564.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 802

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD +KIS AI KAF A+              I N+    VT         
Sbjct: 4   VVKRDGQIVDFDVTKISSAITKAFEALHKN-------YHPSIINMLALQVTADFDPKIKD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  L  SG+  + + Y+LYR++R  +R   S
Sbjct: 57  DRISVESIQDSVEKVLSDSGYADVAKAYILYRKQREQIRNVNS 99


>gi|313905496|ref|ZP_07838860.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
 gi|313469680|gb|EFR65018.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
          Length = 747

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 9/112 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +FD  KI  AIMKA   V       + ++Q I  N++ +        + S 
Sbjct: 12  VIKRNGEEVAFDRKKIYNAIMKANKEVGRIHQMSNYQIQAITDNVSAKV-------HAST 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
             V++EDIQD VE  +M+   +++ ++YV YR +R+  R  +S++  D  +A
Sbjct: 65  HAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRTLAR--KSNTTDDGILA 114


>gi|299141931|ref|ZP_07035066.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
 gi|298576782|gb|EFI48653.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
          Length = 740

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E KG   +         L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTE-KGEDDA---------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|266625113|ref|ZP_06118048.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862990|gb|EFC95288.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 93

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 7/97 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G +  F   KIS AI KAF A  GK        +DI++ L+ + VT   Q   
Sbjct: 2   ILVVKRDGEIVEFHLEKISEAIRKAFKAT-GK-----FYTEDIVELLSIR-VTSDFQGKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               + +EDIQD VE  L +SG+  + + Y+LYR++R
Sbjct: 55  QGDRIAVEDIQDSVEKVLEESGYTDVAKAYILYRKQR 91


>gi|167754489|ref|ZP_02426616.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
 gi|167659114|gb|EDS03244.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
          Length = 696

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 26/121 (21%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN-LTEQTVTRLLQHNKS 89
           ++KR+G   +F   KI RAI KAF++V       S   QD+I N L+  +VT        
Sbjct: 5   IVKRDGTREAFSMEKIQRAIAKAFLSVG------SFATQDVITNILSRVSVTDG------ 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQ+QVE +LM   ++ + + Y+LYR         Q H++ D  +  KL+ +M
Sbjct: 53  ---ISVEEIQNQVEVALMAERYYTVAKAYMLYR---------QRHTE-DREVRDKLQFLM 99

Query: 150 D 150
           +
Sbjct: 100 E 100


>gi|83593776|ref|YP_427528.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576690|gb|ABC23241.1| ribonucleoside-diphosphate reductase class II [Rhodospirillum
           rubrum ATCC 11170]
          Length = 1231

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 30/299 (10%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LW ++    + +  P + F    N        G +++SN C+E       ++T
Sbjct: 429 RTVKARTLWDEIAFAAWASADPGLQFDTTINDWHTCPESGRINASNPCSEYMF---LDDT 485

Query: 598 AVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLD-NVIDINCHTIEKAKKSNHT 652
           A CNL S+NL+           FD    A   R    VL+ +V+     + E A++S + 
Sbjct: 486 A-CNLASLNLITFRGQGAEAGLFDAVGFAHACRLWTVVLEISVLMAQFPSREIAERS-YK 543

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF- 711
            R +GLG       L    +PY S     +       ++  A + S E+A++ GA+  F 
Sbjct: 544 FRTLGLGYANIGGLLMANGLPYDSDAGRALCGALSAIMTGVAYATSAEMAEQMGAFPGFA 603

Query: 712 --------------KGSLWDQGVFPIDSIGLLA-EVRD--ELAMNRTSRLPWDELKKRVK 754
                         + +  +   +   SI  +  ++R+  +  +   ++  WD+  +   
Sbjct: 604 INREAMLRVIRNHRRAAFGESKGYEALSIAPVPLDIRNCPQADLVAVAQRAWDKALEIGT 663

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK 811
             G RN+    IAPT TI  +    +  I+P +  +  K    G  F ++N  + + L+
Sbjct: 664 AHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMVPSALR 722



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVNDDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRASGESLSGG 248

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
              S  ++ FLK+ +  A A+  GG  R+ A     +  H D+EEF+
Sbjct: 249 GKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVICDIDHPDIEEFI 294


>gi|269123987|ref|YP_003306564.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315313|gb|ACZ01687.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
          Length = 704

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 12/109 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G    +D +KI  AI KA   VE K            + +  + +  ++QH +
Sbjct: 1   MNILKRDGREEKYDSNKIRDAINKANETVELK------------ERICNKKIEEIIQHIE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +  I  +E+IQD +E SL+  G +K+ + Y++YR  RS VR A +  +S
Sbjct: 49  NEKISTVEEIQDFIEKSLVSEGLYKLAKNYIVYRYTRSLVRKANTTDES 97


>gi|302387220|ref|YP_003823042.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197848|gb|ADL05419.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 690

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SK+  A+ KAF A  GK         D I  L    V    +   
Sbjct: 2   LKVIKRDGAEAGFDLSKVKEAMKKAFTAT-GK------YYTDSIVELLALRVASDFKDKV 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V +E+IQD VE  L ++G+  + + Y+LYR++R+ +R+
Sbjct: 55  KEDRVAVEEIQDSVEKVLEETGYTDVAKAYILYRKQRAKIRS 96


>gi|160937929|ref|ZP_02085287.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439155|gb|EDP16909.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
          Length = 719

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  A     A ++    + IK++ +    + ++ N+
Sbjct: 1   MKIIKRNGAEEDFDNNKIVVAVAKANTA-----AGKNKLSLEQIKDIADYVEYKCVKLNR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A +
Sbjct: 56  A---VSVEEIQDMVENQIMSTGAFELAKDYVRYRYQRSLIRKANT 97


>gi|254388614|ref|ZP_05003848.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702335|gb|EDY48147.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
          Length = 76

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 314 IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           +E PQ F +R A GLA  +TE+        Y  +S  +++ S+PTLFNSGTR   +SSC+
Sbjct: 2   VETPQHFMLRGACGLAEDDTERALDEDAALYRRMSRLYYLPSSPTLFNSGTRQSHMSSCY 61

Query: 373 LTTVPD-DLYGIF 384
               P   L  +F
Sbjct: 62  FRETPQKQLLSVF 74


>gi|327197763|ref|YP_004301461.1| gp128 [Brochothrix phage A9]
 gi|299810363|gb|ADJ53162.1| gp128 [Brochothrix phage A9]
          Length = 727

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + V  +    LF
Sbjct: 2   QRNGAGAVYLNVFHPDIINFLATKKENADEKVRIKTLSMGLILPDKFYELVGNDDYMYLF 61

Query: 503 SPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           SP    D+   YGK F      E Y+   +   I   R I A  L  ++  +  E G+P+
Sbjct: 62  SP---YDVEREYGKPFSYINITEEYDNLVENKSITKSR-IKARQLNDEISKLQQEAGYPY 117

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLC 585
           I  +D  N+ +     G V  SNLC
Sbjct: 118 IINEDTVNLANAGD--GKVIMSNLC 140



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 23/183 (12%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS  +     + +   DK+   +R   +V    +  +   +   KK N    ++GLG
Sbjct: 552 CNLGSTVISNMMDSGKEFGDKVELMMRALTKV---SMSTSIEEVPTIKKGNDLTHSVGLG 608

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
            MG  S L  + I Y   ++ +  +     ++++++ AS +L++E G +Y  F+ S +  
Sbjct: 609 AMGLHSYLADMEIMYGDEQSKDFTNMYFLLLNYYSLKASNKLSKEAGNSYYGFENSTYAS 668

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLP-------------WDELKKRVKTIGMRNSNCMA 765
           G +  D+   LA   ++LA  RT R+              W +L++ V+  G+ N   MA
Sbjct: 669 GEY-FDT--YLA--NNDLAP-RTERVAELFEDIHIPTVEDWRQLQQEVQAFGLFNKYRMA 722

Query: 766 IAP 768
           +AP
Sbjct: 723 LAP 725


>gi|332526298|ref|ZP_08402426.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
 gi|332110436|gb|EGJ10759.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
          Length = 675

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 12/105 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR G   +FDP+KI+ A+ +A  A     A+R+         LT+Q   RL +   
Sbjct: 17  LAVIKREGRTVAFDPAKIADALARAGAATGEYDAARA-------AELTQQVTERLRRR-- 67

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +  +E IQD+VE  L ++GH    R Y++YRE+R  +R  +S
Sbjct: 68  ---VTGVEQIQDEVERVLQEAGHFDTARAYIVYREQRRALRQDRS 109


>gi|257052675|ref|YP_003130508.1| anaerobic ribonucleoside triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
 gi|256691438|gb|ACV11775.1| anaerobic ribonucleoside-triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
          Length = 706

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V  FD SKI+ AI +AF A E    +        I  LT+  V RL   + S
Sbjct: 4   QVQKRDGTVEPFDRSKITTAIRQAFAAAETDPDTG-------IDALTDGVVDRL---DPS 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V +E IQD VE +L+++  +   + Y+LYR   +++R
Sbjct: 54  DGTVAVETIQDCVERTLVEADEYAAAKRYILYRHRHAELR 93


>gi|158321089|ref|YP_001513596.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158141288|gb|ABW19600.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 710

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KRNG +  F+  KI  AI  A  +V G    ++ ++  I           +L     
Sbjct: 5   KVQKRNGEIVDFNGGKIKEAIFAAAKSVGGSNEVQATKLSKI--------SIEILNETYG 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +EDIQD VE  L++ GH K  + Y+LYR++  ++R
Sbjct: 57  TGVPSVEDIQDIVEKVLIEEGHAKTAKAYILYRKKHEEIR 96


>gi|313836260|gb|EFS73974.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA2]
 gi|314928911|gb|EFS92742.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL044PA1]
 gi|314971126|gb|EFT15224.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA3]
 gi|328906527|gb|EGG26302.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           sp. P08]
          Length = 780

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 18/114 (15%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA-----VEGKGASRSIRVQDIIKNLTEQT 79
           ++    + KR+G V  FD +KI  A+ KAF+A      E   A  ++ V   +  + E+T
Sbjct: 16  RVVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIDTTERHAAEVALEVMSRLSEMGEET 75

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                          +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 76  PD-------------VEAIQDLVEKTLMNQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|307297317|ref|ZP_07577123.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916577|gb|EFN46959.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 717

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG +  FD  KI  A+ KAF A E      +   +DI++ +  + V    Q   
Sbjct: 2   LNVRKRNGAIVGFDLDKIINAMKKAFDATE------THYNEDILERVALRVVADF-QPKA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  ++ IEDIQD VE +L   G   + + Y+LYR  R  +R   S
Sbjct: 55  TDNLIDIEDIQDSVERTLESLGFTDVAKSYILYRRHREKLRELDS 99


>gi|239627658|ref|ZP_04670689.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517804|gb|EEQ57670.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 719

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA +A     A +S    + IK++ +    +  + N+
Sbjct: 1   MKIIKRNGAEEDFDINKIVVAVSKANVA-----AGKSKLSMEQIKDIADYVEYKCDKLNR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A +
Sbjct: 56  A---VSVEEIQDMVENQIMSTGAFELAKDYVRYRFQRSLIRKANT 97


>gi|283852324|ref|ZP_06369595.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572281|gb|EFC20270.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 728

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 13/116 (11%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A P +A   P +I+     KR+G + +F+  KI  AI +A  A    G   ++       
Sbjct: 26  APPRIAIAVPTRIR-----KRDGTIVAFNADKIRSAISRAGAATGDFGDDEALL------ 74

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            LT Q V ++L H  +  I  IE IQD VE +L+ + H +  R Y +YR +R+ +R
Sbjct: 75  -LTAQ-VMKVLSHRFAGQIPDIERIQDVVEQALISANHFRTMRAYSIYRAQRARLR 128


>gi|169838795|ref|ZP_02871983.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 68

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 34/45 (75%)

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           IE IPD++K ++ T+F+I P   IE A+R QKW+DQA S N+YL+
Sbjct: 6   IEAIPDEIKSVYKTSFQILPYAFIEVAARAQKWVDQAISRNMYLE 50


>gi|317505369|ref|ZP_07963296.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
 gi|315663511|gb|EFV03251.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
          Length = 756

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E KG   ++ VQ I  +++         H KS 
Sbjct: 21  VVKRDGRIVGFNEQKIMAAIRKAMMHTE-KGEDDAL-VQKITDHIS--------IHGKSQ 70

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + + Y+ YR +RS  R A++
Sbjct: 71  MTV--EKIQDSVEMELMKSARKDVAQRYIAYRNQRSIARKAKT 111


>gi|90425006|ref|YP_533376.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisB18]
 gi|90107020|gb|ABD89057.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodopseudomonas
           palustris BisB18]
          Length = 673

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FDP+KI  AI +A     GK  +   R +    +L      +++ H   
Sbjct: 12  RVIKRSGEQAPFDPAKIHSAIERA-----GKATAEFDRPE---ADLLGIQAIKVISHRFI 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               HIE IQD VE  L+ + H    R Y++YRE+R+ +R
Sbjct: 64  DQAPHIEQIQDVVEQVLISANHFATARAYIVYREQRARLR 103


>gi|315185589|gb|EFU19358.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           thermophila DSM 6578]
          Length = 689

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  +D S+I+RAI+KA  +V G+   +   + + + +L E+ +  L++     
Sbjct: 16  VVKRDGQIEFYDRSRITRAILKAIESVRGE---KDKSLAEHLTDLVEEKIRALMRDRHPN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               IE+IQD VE  L++     + + Y+LYR + S +R
Sbjct: 73  SAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMR 111


>gi|237749265|ref|ZP_04579745.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
 gi|229380627|gb|EEO30718.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
          Length = 687

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS+  P P++I     IKR+G    FD ++I+ A+ KA  A    G       +D  + L
Sbjct: 18  PSVLPPLPQRI-----IKRDGADVPFDANRITVALTKAGRATGDFG-------EDEAQLL 65

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           T++T+ ++L+H        +E +QD VE  L+ + H K  R Y  YR++R  +R
Sbjct: 66  TQRTL-KVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAYATYRDQRHRLR 118


>gi|291513995|emb|CBK63205.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes shahii
           WAL 8301]
          Length = 697

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 14/104 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G    F   KI RAI KAF++V G                T+  +T +L 
Sbjct: 3   ISEIYIVKRDGKRAPFSVEKIKRAISKAFLSVGGYA--------------TDDDLTSVLS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + +  + +E+IQ+QVE +LM   +  + + Y+LYR++ S+ R
Sbjct: 49  RVRVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHSEDR 92


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  FD  +I RA+ KA       GA+  + +      + E+ V   ++     
Sbjct: 335 VVKRDGRVVPFDELRIVRAVEKA-------GAATGVALD---PGVIERQVLGPIKRKARQ 384

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             +HIE+IQ+ VE  LM+S +  + R Y+LYREER+  R  Q + 
Sbjct: 385 QRLHIEEIQNLVEEGLMKS-YPAVARAYILYREERAKARRDQPYG 428


>gi|266625324|ref|ZP_06118259.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862777|gb|EFC95075.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 787

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G V  F  +KI+ AI KAF A +           + I  L    VT   Q   
Sbjct: 2   IAVLKRDGEVAEFSLNKITEAIKKAFKATKKD-------YNNEILELLSLRVTADFQEKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +E IQD VE  L Q+G+  + + Y+LYR++R  +R
Sbjct: 55  RDGQITVEQIQDSVEHVLEQTGYTDVAKAYILYRKQREKIR 95


>gi|327455910|gb|EGF02565.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA3]
 gi|328757223|gb|EGF70839.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA1]
          Length = 780

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|289426093|ref|ZP_06427840.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
 gi|289153636|gb|EFD02350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
          Length = 780

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|314927073|gb|EFS90904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA3]
          Length = 780

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|313829697|gb|EFS67411.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA2]
 gi|315109656|gb|EFT81632.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA2]
          Length = 780

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|289428068|ref|ZP_06429772.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|289158951|gb|EFD07151.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|313808389|gb|EFS46856.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA2]
 gi|313813745|gb|EFS51459.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA1]
 gi|313818190|gb|EFS55904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA2]
 gi|313821048|gb|EFS58762.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA1]
 gi|313824074|gb|EFS61788.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA2]
 gi|313827180|gb|EFS64894.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA1]
 gi|314961895|gb|EFT05996.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA2]
 gi|314979622|gb|EFT23716.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA2]
 gi|314988358|gb|EFT32449.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA2]
 gi|314990254|gb|EFT34345.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA3]
 gi|315082381|gb|EFT54357.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL078PA1]
 gi|315083828|gb|EFT55804.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA2]
 gi|315087288|gb|EFT59264.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA3]
 gi|315089706|gb|EFT61682.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA1]
 gi|327326632|gb|EGE68420.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA3]
 gi|327449550|gb|EGE96204.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA2]
 gi|328757413|gb|EGF71029.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL020PA1]
 gi|332676520|gb|AEE73336.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes 266]
          Length = 780

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|314968909|gb|EFT13007.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA1]
          Length = 780

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|313763785|gb|EFS35149.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA1]
 gi|313816896|gb|EFS54610.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA1]
 gi|314916660|gb|EFS80491.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA4]
 gi|314918881|gb|EFS82712.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA1]
 gi|314920892|gb|EFS84723.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA3]
 gi|314932335|gb|EFS96166.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL067PA1]
 gi|314956610|gb|EFT00862.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA1]
 gi|314959490|gb|EFT03592.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA1]
 gi|315100259|gb|EFT72235.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA2]
 gi|315102584|gb|EFT74560.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA1]
 gi|327458063|gb|EGF04718.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA2]
 gi|328757606|gb|EGF71222.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA2]
          Length = 780

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|295131657|ref|YP_003582320.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|291375496|gb|ADD99350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|313771801|gb|EFS37767.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL074PA1]
 gi|313810623|gb|EFS48337.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA1]
 gi|313831666|gb|EFS69380.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL007PA1]
 gi|313834820|gb|EFS72534.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL056PA1]
 gi|314975016|gb|EFT19111.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA1]
 gi|314977887|gb|EFT21981.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL045PA1]
 gi|314984705|gb|EFT28797.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA1]
 gi|315095578|gb|EFT67554.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL038PA1]
 gi|327332895|gb|EGE74627.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA2]
 gi|327447723|gb|EGE94377.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA2]
 gi|327448598|gb|EGE95252.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA1]
 gi|328762022|gb|EGF75528.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL099PA1]
          Length = 780

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|160938866|ref|ZP_02086217.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437829|gb|EDP15589.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
          Length = 690

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 7/99 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    F   KI+ AI KAF A  GK  +      DII+ L+ +  +      K +
Sbjct: 4   VAKRDGETVEFQLDKITLAIKKAFKAT-GKSYT-----ADIIELLSLRVTSDFQMKIKDS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            I  +EDIQD VE  L +SG+  + + Y+LYR++R  +R
Sbjct: 58  RI-SVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIR 95


>gi|89899182|ref|YP_521653.1| anaerobic ribonucleoside triphosphate reductase [Rhodoferax
           ferrireducens T118]
 gi|89343919|gb|ABD68122.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodoferax
           ferrireducens T118]
          Length = 675

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKR+GG+  FD +KI+ A+ +A    +  G       Q +   L    + ++  H + 
Sbjct: 11  HIIKRDGGIKPFDGAKIAHALARA---AQVSGEFDDTEAQRLTHYLV---LPKIKVHGQ- 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +  HIE IQD VE +L  +G+ K  R Y++YRE+   +R+
Sbjct: 64  -VTPHIEQIQDAVESALFDAGYPKTLRAYIVYREQHHKLRS 103


>gi|313793665|gb|EFS41696.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA1]
 gi|313802977|gb|EFS44185.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA2]
 gi|313839393|gb|EFS77107.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL086PA1]
 gi|314964686|gb|EFT08786.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA1]
 gi|315079322|gb|EFT51323.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA2]
 gi|327455997|gb|EGF02652.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL092PA1]
          Length = 780

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|299145838|ref|ZP_07038906.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298516329|gb|EFI40210.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 733

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF        S+ +     I     ++V + +    
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAF-------DSKQVEYDPAIV----ESVDKSISLTY 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + + V +E IQD VE +LMQ G++ I + ++LYRE+R   R
Sbjct: 50  TNVPVSVETIQDYVERALMQFGYYDIAKTFILYREQRKSTR 90


>gi|331085611|ref|ZP_08334695.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330407498|gb|EGG87000.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 761

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V  +D SKI+ AI+KA  A     A+ +  V + +++  E+            
Sbjct: 5   IIKRDGRVVLYDESKIASAILKAMEAAGEGDATDAANVANDVQSKLEKL--------PED 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   IE +QD VE +LM+ G  +  ++++LYR +R+ +R A +
Sbjct: 57  MPPQIEQVQDTVERALMKKGFEESAKKFILYRAQRTHIREANT 99


>gi|327335299|gb|EGE77009.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL097PA1]
          Length = 780

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GMGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDGVAKAYILYRQRRTVARDQQS 116


>gi|282879302|ref|ZP_06288047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
 gi|281298584|gb|EFA91008.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
          Length = 735

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E KG           + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTE-KGED---------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MSV--EDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|282881395|ref|ZP_06290073.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304744|gb|EFA96826.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 735

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E KG           + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTE-KGED---------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MSV--EDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|291562920|emb|CBL41736.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 729

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   SFD  KI  A+ KA  A E    +         + LT+       + NK
Sbjct: 1   MKIIKRNGAEESFDTLKIVNAVQKACNATENAYLAP--------EQLTDIADYVEYKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQD VE  LM  G   I + YV YR +RS VR A +
Sbjct: 53  LGRAVSVEEIQDMVENQLMAIGAFAIAKNYVRYRYDRSLVRKANT 97


>gi|258514358|ref|YP_003190580.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778063|gb|ACV61957.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1197

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 8/102 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G   SFD  KI+ AI +A  +V G+   R + ++  I+      V ++++   + 
Sbjct: 5   IKKRDGREVSFDDKKITDAIFRAARSVGGE--DRQLAMELTIE------VLKMIKAKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               +ED+QD VE  L+++GH +  + Y+LYR+ R+ +R A+
Sbjct: 57  NAFGVEDVQDIVEKVLIENGHARTAKAYILYRDRRTRMREAK 98


>gi|237747114|ref|ZP_04577594.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
 gi|229378465|gb|EEO28556.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
          Length = 687

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS+  P P++I     IKR+G    FD  +I+ A+ KA  A    G       +D  + L
Sbjct: 18  PSVLPPLPQRI-----IKRDGAEVPFDARRITVALTKAGRATGDFG-------EDEAQLL 65

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           T++T+ ++L+H        +E +QD VE  L+ + H K  R Y  YR++R  +R
Sbjct: 66  TQRTL-KVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAYATYRDQRHRLR 118


>gi|237722911|ref|ZP_04553392.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
 gi|229447433|gb|EEO53224.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
          Length = 697

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + 
Sbjct: 6   IFIIKRDGKKEAFSLDKIKNAISKAFLSVG------SFATQDVITNV----LSRVSISDG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 56  T----NVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           MD
Sbjct: 102 MD 103


>gi|212702235|ref|ZP_03310363.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
 gi|212674361|gb|EEB34844.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD  KI  AI KA      K +   +   D++  +TE+   +L   N   
Sbjct: 10  IIKRDGTEVAFDSVKILNAITKA-----NKASGEDMSPTDLL-FVTEKVCRKLEAQN--- 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            + H+E+IQD VE +L+Q  + K  + Y+LYR E +  R A+S+
Sbjct: 61  -LRHVEEIQDVVEETLIQYDYAKTAKAYILYRAEHTKRRNAESY 103


>gi|218281714|ref|ZP_03488096.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
 gi|218217221|gb|EEC90759.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
          Length = 724

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    FD SKI  AI KA      K  + +    ++I+++T+  + +     +
Sbjct: 1   MNVIKRSGEEVVFDASKIENAIKKA-----NKATTHNQMSDELIRSVTQSVINKCENLKR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           S    ++E+IQD VE  LM+     +   Y+ YR ER+ VR A S  K
Sbjct: 56  SP---NVEEIQDMVEGELMEHRCFAVAHNYITYRYERALVRKANSTDK 100


>gi|160882839|ref|ZP_02063842.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
 gi|156111703|gb|EDO13448.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
          Length = 697

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + 
Sbjct: 6   IFIIKRDGKKEAFSLDKIKNAISKAFLSVG------SFATQDVITNV----LSRVSISDG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 56  T----NVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           MD
Sbjct: 102 MD 103


>gi|293370688|ref|ZP_06617238.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|292634212|gb|EFF52751.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 697

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + 
Sbjct: 6   IFIIKRDGKKEAFSLDKIKNAISKAFLSVG------SFATQDVITNV----LSRVSISDG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 56  T----NVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           MD
Sbjct: 102 MD 103


>gi|260173775|ref|ZP_05760187.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922040|ref|ZP_07918280.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
 gi|313695915|gb|EFS32750.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
          Length = 697

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + 
Sbjct: 6   IFIIKRDGKKEAFSLDKIKNAISKAFLSVG------SFATQDVITNV----LSRVSISDG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 56  T----NVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           MD
Sbjct: 102 MD 103


>gi|317484305|ref|ZP_07943228.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
 gi|316924449|gb|EFV45612.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
          Length = 755

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 10/98 (10%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHNKSAL 91
           KR+  +  FD +KI++AI +A  +  GK    S+++  ++++ L EQ             
Sbjct: 7   KRDARIVPFDVNKIAQAIFRAASSQGGKDYVLSLKIAAEVLERLNEQF---------EDA 57

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +  +E +QD VE +L++SGH +  + Y+LYR +R+ +R
Sbjct: 58  VPDVEQVQDLVEKTLIKSGHARTAKAYILYRHQRTKIR 95


>gi|299146608|ref|ZP_07039676.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298517099|gb|EFI40980.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 697

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + 
Sbjct: 6   IFIIKRDGKKEAFSLDKIKNAISKAFLSVG------SFATQDVITNV----LSRVSISDG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 56  T----NVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           MD
Sbjct: 102 MD 103


>gi|304382155|ref|ZP_07364666.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
 gi|304336753|gb|EFM02978.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
          Length = 749

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  + KG   ++ VQ I  +++         H KS 
Sbjct: 16  VVKRDGRIVGFNEQKIMAAIRKAMMHTD-KGEDDAL-VQKITDHIS--------IHGKSQ 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 66  MTV--EKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 106


>gi|163815689|ref|ZP_02207061.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
 gi|158448994|gb|EDP25989.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
          Length = 720

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   ++D SKI  AI KA   VE        +++DI+ ++  +   R+L      
Sbjct: 15  VIKRDGRAVNYDRSKIILAIQKANSEVEPCEKISDEKIEDIVGSIEAKNRKRML------ 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               +EDIQD +E  +M  G   + + Y++YR  R  +R A +   S
Sbjct: 69  ----VEDIQDIIEQGIMADGKFVLAKTYIIYRYSRELIRKANTTDDS 111


>gi|50843575|ref|YP_056802.1| anaerobic ribonucleoside triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|50841177|gb|AAT83844.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|315107774|gb|EFT79750.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA1]
          Length = 780

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GIGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|315094850|gb|EFT66826.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL060PA1]
          Length = 780

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GIGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|282854905|ref|ZP_06264239.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|282582051|gb|EFB87434.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|314924386|gb|EFS88217.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL001PA1]
 gi|314967228|gb|EFT11327.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA2]
 gi|314981635|gb|EFT25728.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA3]
 gi|315092274|gb|EFT64250.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA4]
 gi|327328693|gb|EGE70453.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL103PA1]
          Length = 780

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GIGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQS 116


>gi|268609355|ref|ZP_06143082.1| anaerobic ribonucleoside triphosphate reductase [Ruminococcus
           flavefaciens FD-1]
          Length = 772

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI   F A + KG +      D+        V +L +   
Sbjct: 3   IHIIKRDGRKVPFNIEKIANAI---FKAAQAKGGTDFNAAMDVAVE-----VCKLYEEQN 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                 +E+IQD VE +L++ GH K  + Y+LYR ER+  R  +++
Sbjct: 55  PGKTPTVEEIQDLVEKTLIEKGHAKTAKAYILYRYERTRSREMKTN 100


>gi|320527019|ref|ZP_08028208.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320132604|gb|EFW25145.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 734

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   +FD SKI  AI KA  A +    + +     +I+++TE+  ++     +
Sbjct: 1   MNVIKRSGEELAFDVSKIENAITKANNATDLSHRTTA----KVIRDITERVSSKCKSLKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S   V +E+IQD VE  LM++   ++   Y+ YR ER+ VR A +
Sbjct: 57  S---VSVEEIQDMVENELMKAQVFQVAHNYITYRYERALVRKANT 98


>gi|80648|pir||C41476 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain
           homolog - Mycobacterium leprae (fragment)
          Length = 57

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           T+R AVR LD VID+N + IE A+++N   R +GLG MG Q     L +P+ S  A
Sbjct: 2   TVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGAMGLQDVFFKLRLPFDSEPA 57


>gi|317056536|ref|YP_004105003.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448805|gb|ADU22369.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 762

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G     ++        L+ + V  L+ +N 
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGGSDYETALE-------LSGKVVDMLMANNI 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           S   V  E+IQD VE  L++ GH    + Y+LYR ER+  R
Sbjct: 56  STPTV--EEIQDCVEKVLIEEGHAATAKSYILYRSERTRAR 94


>gi|300698167|ref|YP_003748828.1| ribonucleotide reductase oxidoreductase protein (nrdD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074891|emb|CBJ54460.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CFBP2957]
          Length = 685

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  FD  KI RAI  A  A            ++    +  +   R+L H  
Sbjct: 4   TQVMKRDGTLVDFDAEKIRRAIAAAGHAT-----------REFDMPMAAELTGRVLWHLA 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++
Sbjct: 53  DVPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKT 97


>gi|260912237|ref|ZP_05918789.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633671|gb|EEX51809.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 737

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  + KG           + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTD-KGED---------ERLVQQIADRIGFAGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++
Sbjct: 55  MTV--EDIQNQVEMELMKSSRKDVARAYIAYRNQRSVARKAKT 95


>gi|207722416|ref|YP_002252852.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
 gi|206587595|emb|CAQ18177.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
          Length = 685

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  FD  KI RAI  A  A            ++    +  +   R+L H  
Sbjct: 4   TQVMKRDGTLVDFDAGKIRRAIGAAGHAT-----------REFETPMAAELTGRVLWHLA 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++
Sbjct: 53  DMPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKT 97


>gi|292491694|ref|YP_003527133.1| ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
 gi|291580289|gb|ADE14746.1| Ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
          Length = 1129

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           QV KR+G +  FD S+I+ AI +A  A  EG  A    RV D       + +  L Q   
Sbjct: 11  QVRKRDGRLVPFDQSRITHAIFRAMEASKEGDLAHDPSRVSD-------KVIAELNQQYP 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +  I  +E+IQD VE +L+     K  + Y+LYR +R+ +R
Sbjct: 64  ATHIPQVEEIQDLVEETLILMEFAKTAKAYILYRHKRAQIR 104


>gi|83745549|ref|ZP_00942607.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|207738921|ref|YP_002257314.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
 gi|83727626|gb|EAP74746.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|206592292|emb|CAQ59198.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
          Length = 685

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  FD  KI RAI  A  A            ++    +  +   R+L H  
Sbjct: 4   TQVMKRDGTLVDFDAGKIRRAIGAAGHAT-----------REFETPMAAELTGRVLWHLA 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++
Sbjct: 53  DMPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKT 97


>gi|160931567|ref|ZP_02078962.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
 gi|156869438|gb|EDO62810.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
          Length = 795

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 16/104 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSI--RVQDIIKNLTEQTVTRLLQ 85
           ++IKR+G    F+  KIS AI KA  A+ G  +G +  +  +V+D I+   E+  T  ++
Sbjct: 16  RIIKRDGREVPFEIDKISTAIYKAAEAIGGHNRGVAEELAKQVEDYIEK-EEKISTPTVE 74

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           H           IQD VE +L++SGH +  +EY+LYR +R+  R
Sbjct: 75  H-----------IQDVVERTLIESGHSRTAKEYILYRADRTRHR 107


>gi|295106642|emb|CBL04185.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 783

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F+  KI+ A+ +AF A  G    R+   +DI + + E+     L+     
Sbjct: 5   IIKRDGRTAEFNEGKIAEAVERAFQAC-GAMQDRTA-AEDIARKVVEK-----LESGAIE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  +E +QD VE +L++SG  +  + Y+LYR ERS  R   S
Sbjct: 58  GVPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRARDVNS 100


>gi|150005617|ref|YP_001300361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212693359|ref|ZP_03301487.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|237710101|ref|ZP_04540582.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|237723614|ref|ZP_04554095.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D4]
 gi|265754020|ref|ZP_06089375.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294778572|ref|ZP_06743994.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|149934041|gb|ABR40739.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212664124|gb|EEB24696.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|229437962|gb|EEO48039.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           dorei 5_1_36/D4]
 gi|229456194|gb|EEO61915.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|263235734|gb|EEZ21258.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294447521|gb|EFG16099.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
          Length = 697

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 24/122 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V +IKR+G   +F   KI  AI KAF++V       S   QD+I        T +L    
Sbjct: 6   VFIIKRDGKKETFSLDKIKNAIAKAFLSVG------SFATQDVI--------TTVLSRVS 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  +++E+IQ+QVE +LM   ++ + + Y+LYR++  +          D  +  KLK +
Sbjct: 52  VSDGMNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLE----------DREVRDKLKFL 101

Query: 149 MD 150
           +D
Sbjct: 102 LD 103


>gi|536840|gb|AAA85331.1| ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 64

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-N 496
           N    R   +C Y E WH D  + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  
Sbjct: 1   NGAANRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPG 60

Query: 497 AGWT 500
           + WT
Sbjct: 61  SKWT 64


>gi|313900949|ref|ZP_07834439.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312954369|gb|EFR36047.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 781

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAI-MKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + KR+G    F P KI+RAI + A    + +G+       +I   LTE+ V  LL +   
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLAASRVAQEEGSKADYETAEI---LTEKVVN-LLNNTYQ 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E++QD V   L+++GH + +  Y+LYR ER+ +R+ ++
Sbjct: 61  GTTPTVENVQDAVIKVLIETGHARTSEAYILYRAERTRIRSMKT 104


>gi|152987792|ref|YP_001348725.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PA7]
 gi|150962950|gb|ABR84975.1| anaerobic ribonucleoside-triphosphate reductase [Pseudomonas
           aeruginosa PA7]
          Length = 675

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG    FDP KI RAI  A  A  G+  SR  +       L E+ V RL +     
Sbjct: 13  LLKRNGREVPFDPGKIERAIAAAGQAT-GELDSRQAQA------LAERVVERLPER---- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + IE +QD VE  LM++GH+   R YV+Y
Sbjct: 62  ACLDIERVQDLVERVLMEAGHYPTARAYVVY 92


>gi|297562264|ref|YP_003681238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846712|gb|ADH68732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 1779

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 49/266 (18%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E  + L+   F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G
Sbjct: 126 ELKHALAHQLFSFNSPVWFNVGTNSKAQVSACFILSVDDTMESILDWYKEEGIIFKGGSG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  GG  R+ A    L+  H D
Sbjct: 186 AGVNLSRIRS-SKELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 244

Query: 459 VEEFLDLRKN-----------------TGDDRRRTHDMNTAN--WIPDLFMKRVTQNAGW 499
           +E+F++ +                    GDD       N  N   + D FM+ V   + +
Sbjct: 245 IEDFVETKAREEHKIRALRDAGFDVDLGGDDMFSVQYQNANNSVRVSDAFMRAVESGSDF 304

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            L S                           R   +V   + A  L+++M    +E   P
Sbjct: 305 GLTS---------------------------RTTGEVVATVDAKELFQRMARAAWECADP 337

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLC 585
            I +             G + +SN C
Sbjct: 338 GIQYDGTIQDWHTTPESGRISASNPC 363



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNL--CTE-ITLNSSSEETAVCNLGSINLLAHF-ANNQFDY 618
           F+   N+  P+ H  +V  + +  C+E ++L+ SS     CNL SINLL     ++ FD 
Sbjct: 741 FETTYNLTEPRNHSYIVGGTVVANCSEYMSLDDSS-----CNLASINLLKFLREDDTFDV 795

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++  +     +  +D  I       EK  ++   +R +G+G     + L      Y S  
Sbjct: 796 ERFTALTELVITAMDVSITFADFPTEKIGETTRAYRQLGIGYANLGALLMATGHAYDSEG 855

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFK 712
              +A      ++  A   S ELA   G Y  ++
Sbjct: 856 GRAVAAAVTSLMTGTAYRRSAELAGVVGPYDGYR 889


>gi|295102055|emb|CBK99600.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii L2-6]
          Length = 723

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V GK      ++ DI   +T+Q        N+
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGKARLSREQITDIAAAVTDQCQAL----NR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E++QD VE  LM    H I R Y+ YR
Sbjct: 57  A---VSVEEVQDMVENQLMDIKAHDIARHYITYR 87


>gi|307718381|ref|YP_003873913.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
 gi|306532106|gb|ADN01640.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
          Length = 689

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  +D S+I+RA++KA  +V G+   +   + + + +L E+ +  L++     
Sbjct: 16  VVKRDGQIEFYDRSRITRAVLKAIESVRGE---KDKPLAEHLTDLVEEKLRALMRDRHPN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               IE+IQD VE  L++     + + Y+LYR + S +R
Sbjct: 73  SAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMR 111


>gi|295111909|emb|CBL28659.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Synergistetes bacterium SGP1]
          Length = 772

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI +A  AV   G             LTE+ V  + Q  +
Sbjct: 3   ARIRKRDGREVPFNAEKIAGAIGRALAAVGEPGTE--------AMPLTERVVAHMEQKLQ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              +  +E+IQD VE  L++SG  +  + Y+LYR  RS  R  +SH
Sbjct: 55  GG-VPQVEEIQDIVEEVLIESGRARAAKAYILYRASRSRAREMKSH 99


>gi|293400325|ref|ZP_06644471.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306725|gb|EFE47968.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 720

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-N 87
           + +IKR+G    FD SKI  A+ KA  +V         ++  I+ N     VT   QH N
Sbjct: 1   MNIIKRSGKEVVFDASKIEDAVCKANQSVTHIYQMSGEQIAQIVTN-----VTAYCQHLN 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +SA +   E+IQD+VE  +M+    K+   Y+ YR +R  VR + S  K
Sbjct: 56  RSATV---EEIQDKVEEEIMKQSAFKVANNYITYRYKRELVRKSNSTDK 101


>gi|224535702|ref|ZP_03676241.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522682|gb|EEF91787.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 697

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 24/120 (20%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   +F   KI  AI KAF++V       S   QD+I N+    ++R+   + ++
Sbjct: 8   IVKRDGKKEAFSLDKIKNAISKAFLSV------GSFATQDVITNI----LSRVNISDGTS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +EDIQ+QVE +LM   ++ + + ++LYR++  +          D  +  KL+ +MD
Sbjct: 58  ----VEDIQNQVEIALMAEHYYSVAKAFMLYRQKHLE----------DREVRDKLRFLMD 103


>gi|332300584|ref|YP_004442505.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177647|gb|AEE13337.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 799

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A    G +  ++   I+   T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIAT---GQTECLQEAKIV---TMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|255994385|ref|ZP_05427520.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993098|gb|EEU03187.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
          Length = 750

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FD SKIS AI+ A   + G     S +       L  +   RL+    S
Sbjct: 6   KIRKRDGRIVDFDISKISEAILNAAKVLGGNNKEMSDK-------LASEVHDRLIAQFGS 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                +E IQD VE  L+ +GH +  +EY+LYR ER+  R
Sbjct: 59  TP-PPVESIQDVVEAVLIDNGHARTAKEYILYRAERTKNR 97


>gi|302345375|ref|YP_003813728.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150044|gb|ADK96306.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
          Length = 719

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++K   + KR+G    F   KI  AI+KAF +V       ++    II NL  Q      
Sbjct: 2   EMKNFTITKRDGSKDRFSLDKIMNAILKAFESVNEPTDLGTL--SKIIANLNIQND---- 55

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                   + +EDIQ+QVE +LM+ G++++ + +++YR++ ++ R
Sbjct: 56  --------IKVEDIQNQVELALMKEGYYQVAKSFIVYRQQHTEDR 92


>gi|291550831|emb|CBL27093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus
           torques L2-14]
          Length = 719

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 14/108 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI---RVQDIIKNLTEQTVTRLLQ 85
           +++IKRNG   +FD  KI  A+ KA    +     R++   +++DI + +         +
Sbjct: 1   MKIIKRNGSEETFDIQKIVVAVTKA----DKDNGERTLTDSQIEDIAEYVE-------FK 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    V +E+IQD VE  +M +G  ++ R+YV YR +RS VR A +
Sbjct: 50  CNKLNRAVSVEEIQDMVENQIMATGAFELARKYVRYRYKRSLVRKANT 97


>gi|313885875|ref|ZP_07819615.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924630|gb|EFR35399.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 799

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A    G +  ++   I+   T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIAT---GQTECLQEAKIV---TMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|189424838|ref|YP_001952015.1| anaerobic ribonucleoside triphosphate reductase [Geobacter lovleyi
           SZ]
 gi|189421097|gb|ACD95495.1| anaerobic ribonucleoside-triphosphate reductase [Geobacter lovleyi
           SZ]
          Length = 669

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 15/114 (13%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P LA PF        V+KR+G    F+ S+I  AI +A  A    G   ++        L
Sbjct: 4   PVLAAPF-------FVLKRDGTRAPFEASRIQSAIQRAGTATAEFGDDEAM--------L 48

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V ++L+H        IE IQD VE +L+ + H    R Y +YRE+RS +R
Sbjct: 49  ITSQVLKVLRHRFPQEPPTIEQIQDVVEQALISANHFATLRAYAVYREQRSRLR 102


>gi|160914925|ref|ZP_02077139.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
 gi|158433465|gb|EDP11754.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
          Length = 781

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           + KR+G    F P KI+RAI  A   V    A  S  V D    + L EQ V  LL +  
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLAASHV----AQDSGEVADYATAERLCEQVVG-LLNNCY 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E++QD V   L+++GH K +  Y+LYR ERS +R
Sbjct: 60  QDKVPSVEEVQDMVVKVLIENGHAKTSEAYILYRAERSKIR 100


>gi|317472119|ref|ZP_07931451.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900523|gb|EFV22505.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
          Length = 81

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A  ID  W +++   RQ+ IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY 
Sbjct: 7   YKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEQGVKTIYYT 66

Query: 904 RSRS 907
           RS+S
Sbjct: 67  RSKS 70


>gi|157781903|gb|ABV72277.1| NrdA [Azospirillum brasilense]
          Length = 108

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ +  A A+  G
Sbjct: 7   GIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLAG-GGKSSGLMSFLKIGDRAAGAIKSG 65

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           G  R+ A    ++  H D+E ++D + + G  R
Sbjct: 66  GTTRRAAKMVTVDMDHPDIEAYIDWKGDRGARR 98


>gi|266625307|ref|ZP_06118242.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862793|gb|EFC95091.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 424

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G + ++D  KI RAI KA   V+    +    +  I+ ++  +          
Sbjct: 2   IKVQKRDGRIVNYDREKIVRAIQKANAEVDAAERAGEALIDGILDDVERECED------- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              +VH+E IQD +E  L++   + ++++Y++YR +R+ +R A +  +S
Sbjct: 55  ---VVHVESIQDMIESRLVKQNKYTLSKKYMIYRYQRALLRKANTTDES 100


>gi|291545180|emb|CBL18289.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ruminococcus sp. 18P13]
          Length = 774

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI +A  +V G     ++++           V  L++   
Sbjct: 3   IHIIKRDGRKVPFNMEKIANAIFRAAQSVGGTNFEEAMQIA--------ARVCALVEEKY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              +  +E +QD VE +L++ GH    + Y+LYR ER+  R  +++
Sbjct: 55  PGQVPTVEQVQDLVEKTLIEEGHAATAKAYILYRYERTRSREMKTN 100


>gi|329121537|ref|ZP_08250160.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
 gi|327468836|gb|EGF14309.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
          Length = 730

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G       ++  +      +T+ +    +K 
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDGIHRMNHYQICGV-----AETIAKFA--DKC 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 62  SHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNT 105


>gi|329729535|gb|EGG65936.1| ribonucleoside-diphosphate reductase subunit alpha domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 208

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 48/238 (20%)

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVF----------PIDSIGLLAEVRDELAM 738
           ++F++I  S+E+A+ERG  Y  F+ S +  G +          P      + E+ D +A+
Sbjct: 3   MNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEP--QFEKVRELFDGMAI 60

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P              
Sbjct: 61  PTSE--DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMP-------------- 104

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +V+++++R   +      + +          +       + +AF  D M LI+
Sbjct: 105 -------IVDQIERRTYGNAETFYPMPF----------LSPQTMWYYKSAFNTDQMKLID 147

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 148 LIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK-LLSVEECT 204


>gi|313892083|ref|ZP_07825679.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
 gi|313119475|gb|EFR42671.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G       ++  +      +T+ +    +K 
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDGIHRMNHYQICGV-----AETIAKFA--DKC 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 62  SHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNT 105


>gi|288928325|ref|ZP_06422172.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331159|gb|EFC69743.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 737

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  + KG           + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTD-KGED---------ERLVQQIADRIGFVGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++
Sbjct: 55  MTV--EDIQNQVEMELMKSSRKDVARAYISYRNQRSVARKAKT 95


>gi|315104645|gb|EFT76621.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA2]
          Length = 780

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 20/109 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR------SIRVQDIIKNLTEQTVTRLL 84
           + KR+G V  FD +KI  A+ KAF+A  G G S       ++ V   +  + E+T     
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVAC-GIGTSELHASEVALEVMSRLSEMGEETPD--- 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                     +E IQD VE +LM  GH    + Y+LYR+ R+  R  QS
Sbjct: 78  ----------VETIQDLVEKTLMDQGHDDAAKAYILYRQRRTVARDQQS 116


>gi|320527903|ref|ZP_08029070.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320131699|gb|EFW24262.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 647

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G   +F+  K++ AI KAF A + +         D + +L    +T   +    
Sbjct: 4   RVKKRDGSTAAFNIKKVASAIRKAFDACDRE-------YTDSVIDLIALRITSDFEPKIQ 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             ++ +E IQD  E  L +SG+  +++ Y+LYR++R +VR
Sbjct: 57  NSLIDVEKIQDSAEKVLSESGYADVSKAYILYRKQRENVR 96


>gi|261878746|ref|ZP_06005173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
 gi|270334755|gb|EFA45541.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
          Length = 737

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH--NK 88
           V+KR+G +  F+  KI  AI KA +  +              K   EQ + R+  H   K
Sbjct: 5   VVKRDGRIVGFNDQKIQAAIRKAMLHTD--------------KGEDEQLIVRITDHIAMK 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 51  GNPQMSVEEIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|309388471|gb|ADO76351.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium
           praevalens DSM 2228]
          Length = 1033

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
           V V KRNG    F  +KI +A+ KA  +V       ++++  +++  L      ++   N
Sbjct: 4   VYVRKRNGQQVKFKLNKIEKAVNKAAASVGRNEGQIAVKIAAEVLAYL------KIFFEN 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           ++  +V +E IQD VE  L++ G+ +I + Y+LYRE+ S  R ++
Sbjct: 58  ENNNLVEVEQIQDLVEKVLIEKGYAEIAKAYILYREQHSKFRNSK 102


>gi|332829841|gb|EGK02483.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 735

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVE-GKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G +  F+  KI  AI KA +  E G+ +S   R+ D I     + +T        
Sbjct: 5   VIKRDGRIVGFNEEKIMAAIRKAMLHTEQGEDSSLIRRITDFISCQGNEQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM+S   +  ++Y+ YR++R+  R A++
Sbjct: 57  -----VEQIQDMVEVELMKSPRKEAAKKYIAYRDQRNIARKAKT 95


>gi|288925296|ref|ZP_06419231.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
 gi|288338061|gb|EFC76412.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
          Length = 741

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 12/105 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  + KG   ++ V+     +T+    R     KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTD-KGEDEALIVK-----ITDHIAFR----GKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           + V  EDIQD VE  LM+S    + ++Y+ YR +RS  R A++ +
Sbjct: 55  MSV--EDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKTRN 97


>gi|315607270|ref|ZP_07882270.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
 gi|315250973|gb|EFU30962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
          Length = 741

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  + KG   ++ V+     +T+    R     KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTD-KGEDEALIVK-----ITDHIAFR----GKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MSV--EDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKT 95


>gi|186688097|gb|ACC86126.1| anaerobic ribonucleoside-triphosphate reductase [uncultured
           bacterium]
          Length = 322

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + +F   KISRAI   FMA    G S       I   +     T L      
Sbjct: 4   QIKKRDGRIVNFSKEKISRAI---FMAAREVGGSDFAMADSIADKVINYMATVLPPDE-- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +E +QD VE  L++ GH K  + Y+LYR +R+  R A++
Sbjct: 59  --IPTVEFVQDCVEKVLIEDGHAKTAKAYILYRAKRTRYREAKT 100


>gi|228470172|ref|ZP_04055079.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
 gi|228308123|gb|EEK16986.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
          Length = 799

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A    G +  ++     K +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIAT---GQTECLQEA---KTVTMGVLGRIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|322779112|gb|EFZ09483.1| hypothetical protein SINV_11842 [Solenopsis invicta]
          Length = 92

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            ++Y+  + L   Y L ING   E PQ   MRVA+G+   + +K    +E YN LS  +F
Sbjct: 17  GYDYIDFKTLERSYLLKINGKMGERPQHMLMRVAIGIHENDIDK---VIETYNYLSEQYF 73

Query: 352 MCSTPTLFNSGTR 364
               PTLFN+ T+
Sbjct: 74  THPLPTLFNACTK 86


>gi|209963665|ref|YP_002296580.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           centenum SW]
 gi|209957131|gb|ACI97767.1| anaerobic ribonucleoside-triphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 675

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G V++F+  KI  AI +A  A  E  GA   +     IK         ++ H   
Sbjct: 13  VIKRSGEVSAFNGDKIRSAIERAGKATGEFDGAEAHLLAIQAIK---------VIGHRFH 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               HIE IQD VE  L+ + H    R Y++YRE+R+ +R
Sbjct: 64  TDAPHIEQIQDVVEQVLISANHFATARAYIVYREQRARLR 103


>gi|192291023|ref|YP_001991628.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284772|gb|ACF01153.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
          Length = 673

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F  +KI  AI +A  A    G   +         LT Q+V +++ H  + 
Sbjct: 13  IIKRSGAEAAFASAKIRSAIARAGQATGEFGELEA-------GLLTSQSV-KVIAHRFAG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  IE IQD VE  L+ + H    R Y++YRE+RS  R
Sbjct: 65  AVPQIEQIQDIVEQVLISANHLTTARAYIVYREKRSQAR 103


>gi|325269325|ref|ZP_08135942.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
 gi|324988246|gb|EGC20212.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
          Length = 718

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V            D+       T++++L
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVN--------EPTDL------GTMSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIA 142
                   + +EDIQ+QVE +LM+ G +K+ + +++YR++ ++ R      K  SD  IA
Sbjct: 48  ADLDIQNDIKVEDIQNQVETALMKEGFYKVAKSFIVYRQQHTEDRETLEKMKFLSDYCIA 107


>gi|258647549|ref|ZP_05735018.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
 gi|260852335|gb|EEX72204.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
          Length = 775

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 111/494 (22%), Positives = 167/494 (33%), Gaps = 93/494 (18%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTRHPQ--LSSC 371
           P+A   R A  L   E +      E   F  L  + H   STP L   G  H Q  +S  
Sbjct: 47  PEATLRRCAGALGRIEAKYPDPVSEEEIFDFLYPAHHVSLSTPMLAGLGNPHRQAPVSDA 106

Query: 372 FLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F        Y    +  A +E   L +    LG+D +  R   A +     +S+   P +
Sbjct: 107 FTIGFGPKAYSYNDLLQADEEEVYLLRRGAALGHDLS--RIYPAQLQ--TEQSEKATPDV 162

Query: 429 KVANDTAVAVNQGGKRK---GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
             A +      Q   R    GA+   L   H D E F+D     G   R T  +N    I
Sbjct: 163 VSALERYARSRQEAARLTACGAITLSLSIKHPDAEAFID----AGARMRTTAGVNCCLLI 218

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V +                + Y ++F +         D     +   I A  L
Sbjct: 219 DDDFMYAVAKG---------------ESYRQQFPV---------DAESPLLATNIDARRL 254

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETA 598
           W K+L        P I F D  N+   Q       +       TLN++       S    
Sbjct: 255 WEKLLRKAMRNEAPEIHFSD--NMLKEQLAGCYAGARPQALAATLNATIPLATYDSSRLL 312

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI--------------- 643
             NL S           FD+      +    R+ D+++DI    I               
Sbjct: 313 TVNLYSYVEQPFTEQAIFDHKLFRRHLFLVQRLADDLVDIEEEKIDSMLQNIADAEVPAE 372

Query: 644 ---------EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
                    EK ++   T+R  GL L G    L  L +   +P A        + ++   
Sbjct: 373 AKMIEQKLWEKVRRHLLTYRPTGLLLTGEAETLAALGLSQDTPAAGAHTRALKQSLAIAT 432

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             ++V++A+ERGA+S +     D G           E  + L +   +  P  +L  R++
Sbjct: 433 CESTVKMAEERGAFSDY-----DAG----------REAENSLILRLRNVAP--DLYDRMQ 475

Query: 755 TIGMRNSNCMAIAP 768
            IG RN  C  + P
Sbjct: 476 KIGRRNLACTIVTP 489


>gi|300725847|ref|ZP_07059313.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
 gi|299776894|gb|EFI73438.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
          Length = 739

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M V  KG    +     I+ +T+   T+     KS 
Sbjct: 5   VVKRDGRIVGFNDVKIKSAIRKA-MLVTDKGEDDVL-----IQKITDHIATK----GKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MSV--EAIQDAVEVELMKSARKDVAQKYIAYRNQRSIARKAKT 95


>gi|66391299|ref|YP_238596.1| ORF045 [Staphylococcus phage Twort]
 gi|62637229|gb|AAX92340.1| ORF045 [Staphylococcus phage Twort]
          Length = 247

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TP   NSG  +  +LSSC+L  V D +  I          +K +GG   D T +R  G 
Sbjct: 152 ATPVYLNSGLGKRGELSSCYLFIVDDTIESINFITDSVRQASKNAGGCAVDLTRLRPRGT 211

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            ++G    S+GVIPF K    +    NQG
Sbjct: 212 EVNGVPNASKGVIPFAKNIEQSVSYFNQG 240


>gi|221195724|ref|ZP_03568778.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
 gi|221184490|gb|EEE16883.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
          Length = 740

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 11/96 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +++IKRNG   +FD  KI  AI KA   V G  +   R IR   +  N+T++ +      
Sbjct: 1   MKIIKRNGSEVTFDVDKIENAIAKANAEVNGDERLTDREIRFAAL--NVTDECM------ 52

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            ++   V +E++QD VE  LM   H ++ R+Y++YR
Sbjct: 53  -EAGHTVTVEEVQDLVEDQLMALDHFEVARKYIIYR 87


>gi|323345594|ref|ZP_08085817.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
 gi|323093708|gb|EFZ36286.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
          Length = 710

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +I+   + KR+G    F   KI  AI+KAF +V               + +   ++++LL
Sbjct: 2   EIRDFVITKRDGSKDRFSLDKIMNAIIKAFNSVN--------------EPINLGSISKLL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            H      + +EDIQ+QVE +LM+ G++ + + ++LYR+  ++ R
Sbjct: 48  SHLAIHDDIKVEDIQNQVEEALMREGYYNVAKSFMLYRQAHTEDR 92


>gi|325290819|ref|YP_004267000.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966220|gb|ADY56999.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 707

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KI +A+ KA  A       +  R+      +T++ V  L ++  S 
Sbjct: 3   VVKRDGRKEIFNSGKIQQAVEKALTATGADNVDQWSRI------ITDRVVADLNENFSSG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + IE IQD+VE  LM++G+ K+ R Y+ YR +   +R
Sbjct: 57  DGITIEYIQDKVEDILMRTGNTKVARSYIRYRFQHEIIR 95


>gi|218264992|ref|ZP_03478616.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221660|gb|EEC94310.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
          Length = 737

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E  G  R + V+ I  +++ +  T++       
Sbjct: 5   VIKRDGRIVGFNEEKIATAIRKAMLHTE-NGEDREL-VRQITDHISFKGDTQMT------ 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  ----VEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|222153867|ref|YP_002563044.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           uberis 0140J]
 gi|222114680|emb|CAR43757.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           uberis 0140J]
          Length = 731

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + SFD +KI  A++KA + V         +++ I + +  + + R   +  
Sbjct: 14  IKVIKRDGRLVSFDTTKIYSALLKASLEVTKMSPLMEAKLEAISERVVAEIIDRFPNN-- 71

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 72  ----VKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 109


>gi|222109329|ref|YP_002551593.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax ebreus
           TPSY]
 gi|221728773|gb|ACM31593.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax ebreus
           TPSY]
          Length = 675

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A  A    G       +D  + LT Q  T++L H    
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARAGQATGEFG-------EDEARLLTAQ-ATKVLIHRFHG 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA
Sbjct: 67  EAPAIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRA 106


>gi|307565599|ref|ZP_07628079.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
 gi|307345758|gb|EFN91115.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
          Length = 698

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   + KR+G    F   KI  AI+KAF +V     +    V  I+ +LT         
Sbjct: 1   MQNFTITKRDGSKEMFSLDKIMGAILKAFESV--NAPTDLAAVSKILSDLT--------I 50

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           HN     + +EDIQ+QVE +LM+ G++ + + +++YR + S  R  Q   K
Sbjct: 51  HND----ITVEDIQNQVEQALMKEGYYDVAKSFIVYRHQHSQDRETQDKIK 97


>gi|158522580|ref|YP_001530450.1| anaerobic ribonucleoside triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
 gi|158511406|gb|ABW68373.1| anaerobic ribonucleoside-triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
          Length = 730

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +T+FD  KI+ AI K+  A  G+   R        K LT + +T L    K  
Sbjct: 5   IKKRDGRITTFDSKKITEAIAKSGKAT-GEFDGREA------KKLTLRVLT-LASQMKLG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  +E+IQD VE  L+ S  +K  + Y+LYRE+ + +R
Sbjct: 57  PVPEVEEIQDIVERVLLDSPFYKSAKSYILYREQHTQIR 95


>gi|269795447|ref|YP_003314902.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
 gi|269097632|gb|ACZ22068.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 754

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  +DP+++ RA+  AF  V   G ++ +R    +  LTEQ    + +  +  
Sbjct: 32  VLKRDGRVAEYDPARVERALTSAFADVH-VGPAQLVR--PAVLGLTEQVGAEIAR--RFT 86

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQ+ VE  L++S H+++   Y+ YR  R   R
Sbjct: 87  DTVQIYEIQNVVEHVLLESRHYEVAEAYIAYRVRRDVAR 125


>gi|319935635|ref|ZP_08010069.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
 gi|319809512|gb|EFW05933.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
          Length = 766

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           KR+G +  FD +KI+ AI KAF A E K     +I V         Q V   L+   S L
Sbjct: 7   KRDGRMDQFDVNKIAGAIYKAFQATEAKYDLDTAIAVA--------QEVEEKLEARHSEL 58

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +E +QD VE +L+  G+ +I + Y+LYR ER+  R  +S
Sbjct: 59  PT-VELVQDTVEETLISKGYVRIAKAYILYRAERTRSRDRKS 99


>gi|166032728|ref|ZP_02235557.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
 gi|166027085|gb|EDR45842.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
          Length = 729

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    FD  KI  AI  A   V+        +V+ I  ++  Q         KS
Sbjct: 8   KVIKRNGEEVGFDLEKIENAIRAANEEVDNIYKLNEFQVRAIADDIAGQV-------KKS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +H+EDIQD VE  +M    +++ ++YV YR +R   R + +
Sbjct: 61  THAIHVEDIQDMVETGIMGMRGYEVAQKYVRYRYKRELARKSNT 104


>gi|241889296|ref|ZP_04776599.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
 gi|241864133|gb|EER68512.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
          Length = 727

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + VIKR+G +  FD  KI +AI KA  +V GK  + S+ +  I+ N+  +   R   +
Sbjct: 19  KNLLVIKRDGRIVRFDTEKIYKAIEKAVHSVFGK--NHSVNINGIVDNVILEIANRFKGN 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                 + I ++Q+ VE +L+  G   I  EYV YR  R
Sbjct: 77  ------IKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMR 109


>gi|220931945|ref|YP_002508853.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
 gi|219993255|gb|ACL69858.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
          Length = 676

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F   KI  A+MKA  AV G+       V++I + +T + ++ L    K 
Sbjct: 4   KIKKRDGRLVPFKHEKIKNAVMKAAQAV-GRND-----VEEIGEEITREIISYLNIFFKD 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +E +QD VE  L++ G+ +  + Y+LYRE+ + +R
Sbjct: 58  EGVPTVEQVQDLVEKVLIEKGYAETAKAYILYREQHAKLR 97


>gi|62996798|gb|AAY24449.1| ribonucleoside-diphosphate reductase large chain precursor [Wiseana
           iridescent virus]
          Length = 330

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 32/173 (18%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRV------- 493
           R+G+  AYL+  H ++  FL+ R+ +G   D   +  +++ A  IPD FM+++       
Sbjct: 3   RRGSYAAYLDITHPEIISFLNTRRVSGVGGDYNFKLMNIHNAVNIPDEFMRKIWFISTVT 62

Query: 494 -----------------TQNAG-WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
                             +N+  W  FS  ++ D      ++F    + +    D    K
Sbjct: 63  PLLRENKYLKIEETIKEIKNSNKWVEFSELKIEDFTPQNSQKFIKEMDKWN-LFDPHTKK 121

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VHSSNLC 585
           V   ISA  LW ++L    ETG P++ F D  N   P  Q+ +G+ V  SNLC
Sbjct: 122 VKETISATELWERILITRAETGEPYLHFIDASNRNLPSFQKKLGLRVKQSNLC 174


>gi|121592522|ref|YP_984418.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax sp.
           JS42]
 gi|120604602|gb|ABM40342.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax sp.
           JS42]
          Length = 678

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A  A    G       +D  + LT Q  T++L H    
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARAGQATGEFG-------EDEARLLTAQ-ATKVLIHRFHG 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA
Sbjct: 67  EAPTIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRA 106


>gi|91202836|emb|CAJ72475.1| similar to oxygen sensitive ribonucleoside triphosphate reductase
           NrdD [Candidatus Kuenenia stuttgartiensis]
          Length = 812

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ---TVTRLLQHN 87
           V+KR+G    F   KI+ AI KA  AV G             + L E+    V+  L   
Sbjct: 8   VVKRDGRTAPFVEKKIADAIFKAAQAVGGND-----------RALAEELAVVVSMFLAKK 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +     IE+IQD VE  L+++GH K  + Y++YR++R+ +R
Sbjct: 57  YNGNPPGIENIQDVVEKVLIETGHAKTAKAYIIYRDKRARIR 98


>gi|213584599|ref|ZP_03366425.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 236

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 20/165 (12%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 70  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLED 231


>gi|239909067|ref|YP_002955809.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798934|dbj|BAH77923.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 699

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G + +FD  KI  A+ +A       GA+     +D    LT Q V ++L H   
Sbjct: 7   RIRKRDGQIVTFDADKILSAVRRA-------GAATGEFGEDEAWLLTAQVV-KVLSHRFI 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I  IE IQD VE + + + H +  R Y +YRE+R+ +R
Sbjct: 59  GQIPDIERIQDIVEQAFVSANHFRTLRAYSVYREQRARLR 98


>gi|221309913|ref|ZP_03591760.1| hypothetical protein Bsubs1_11101 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314236|ref|ZP_03596041.1| hypothetical protein BsubsN3_11027 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319158|ref|ZP_03600452.1| hypothetical protein BsubsJ_10953 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323432|ref|ZP_03604726.1| hypothetical protein BsubsS_11072 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 240

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 42/253 (16%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           PN+ K+    +++K  +      ++K ++A H         YF  YI +       H+  
Sbjct: 6   PNWIKLNNEIMIQKDGK----YQFEKDKEAVH--------SYFVDYINQN--TVFFHDLK 51

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQI----------------------LYDRYFLHING 311
              D  YL  +  YE +F  +Y   QI                       Y+ Y L  N 
Sbjct: 52  EKLD--YLIKNDYYEEEFLSKYTFEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTN- 108

Query: 312 SRIEMPQAFFMRVAM-GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369
            + ++ + +  RV++  L   + + EK   E + ++    +  +TPT  N+G  R  ++ 
Sbjct: 109 DKTKILERYEDRVSIVALYCADGDYEKAVEEVHTMMKQ-EYQPATPTFLNAGRKRRGEMV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K
Sbjct: 168 SCFLLEVGDSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMK 227

Query: 430 VANDTAVAVNQGG 442
           + ++     +Q G
Sbjct: 228 LLDNAFRYADQMG 240


>gi|229825027|ref|ZP_04451096.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
 gi|229790774|gb|EEP26888.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
          Length = 737

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V++IKR+G  + FD +KI  A+ KA   V       S   ++ +  +TE  VT++    
Sbjct: 3   AVKIIKRSGQESIFDSNKIKLAVQKANDEVVADDLKLS---EEEVLKITE-NVTKVCSSM 58

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             AL   +E+IQD VE  LM++G   + R+Y+ YR +R+ VR  QS++  D
Sbjct: 59  NRAL--SVEEIQDLVEDELMKTGKTHVARKYITYRYKRALVR--QSNTTDD 105


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+    SF   KI+ A++KA +AV   G+ +    + + K++ +  + R  ++N  
Sbjct: 5   HIKKRDYSTKSFHLDKITAAVLKAMLAV-NTGSEKE--AEKVAKSVYDVLLER--KNNDK 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + I  IE++QD VE  LM+ G  ++ + Y+LYR +R+  R
Sbjct: 60  SYIPTIEEVQDIVETKLMECGFPEVAKAYILYRNKRTQER 99


>gi|225869406|ref|YP_002745354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702682|emb|CAX00785.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 732

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++  
Sbjct: 14  AIKVIKRDGRLVNFDATKIYSALLKASMKV----TRMSPLVEAKLEAISERVIAEIIERF 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 70  PTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|225871404|ref|YP_002747351.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
 gi|225700808|emb|CAW95505.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
          Length = 732

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++  
Sbjct: 14  AIKVIKRDGRLVNFDATKIYSALLKASMKV----TRMSPLVEAKLEAISERVIAEIIERF 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 70  PTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|195978954|ref|YP_002124198.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975659|gb|ACG63185.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 732

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++  
Sbjct: 14  AIKVIKRDGRLVNFDATKIYSALLKASMKV----TRMSPLVEAKLEAISERVIAEIIERF 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 70  PTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|224066617|ref|XP_002302165.1| predicted protein [Populus trichocarpa]
 gi|222843891|gb|EEE81438.1| predicted protein [Populus trichocarpa]
          Length = 129

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 59/160 (36%)

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
           P+   G+ I G +G S G +P L+V N T                         + +L  
Sbjct: 5   PIFPTGSSIRGEDGASNGFVPTLRVFNHT-------------------------DRYLIK 39

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            +  G + RR  D+  A WIPDLF++RV  +  W                          
Sbjct: 40  EEGRGKEERRAQDLFCALWIPDLFIERVRGDGSW-------------------------- 73

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                +G+ KV   +SA  LW ++L    ETG P++ F D
Sbjct: 74  -----KGQKKV---VSARKLWFEILNSQTETGTPYMLFHD 105


>gi|325681522|ref|ZP_08161047.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324106789|gb|EGC01080.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 756

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G     ++        L+ + V  L+   K
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGGSDYETALE-------LSGKVVDMLMA--K 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + +   +E+IQD VE  L++ GH    + Y+LYR  R+  R
Sbjct: 54  NVITPSVEEIQDCVEKVLIEEGHAATAKSYILYRSMRTKAR 94


>gi|257440198|ref|ZP_05615953.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197232|gb|EEU95516.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 723

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V  K +    ++  I  ++TEQ        N+
Sbjct: 1   MKIIKRNGSEVPFDITKIITAVTKASDSVSRKSSLTQEQILSIANDVTEQCQAL----NR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E+IQD VE  LM    H + R Y+ YR
Sbjct: 57  A---VSVEEIQDMVENKLMDIQAHDVARHYITYR 87


>gi|281355198|ref|ZP_06241692.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318078|gb|EFB02098.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 778

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V S+D  KI RAI KA  A     A  + +  +        +     +    A
Sbjct: 5   IVKRDGRVVSYDDGKIVRAIQKAMDA-----AGHTAKAGEAAIIAAAASAIVEEKCPGKA 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +EDIQD VE +LM++G  ++ + Y+LYR ER+  R  ++
Sbjct: 60  --PQVEDIQDAVEIALMRNGLEEVAKSYILYRAERTRTREMKT 100


>gi|227871727|ref|ZP_03990136.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
 gi|227842436|gb|EEJ52657.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
          Length = 738

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  A+ KA   V         ++Q        +TV + +Q +  A
Sbjct: 18  VIKRNGKEVKFDIYKIIHAMEKANKEVAPVYQMNEYQIQ-----AAAETVAKKIQASSHA 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V++EDIQD VE ++M+   +++ ++YV YR +R   R A S
Sbjct: 73  --VNVEDIQDMVETAIMEMRAYEVAQKYVRYRYKREMARKANS 113


>gi|74318189|ref|YP_315929.1| anaerobic ribonucleoside triphosphate reductase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057684|gb|AAZ98124.1| ribonucleotide reductase [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    FD  KI  A+++A  A    G   +        +L    V ++L H+  
Sbjct: 16  EVLKRDGRRAPFDAGKIRSALLRAGQASGEFGGDEA--------DLLTAQVVKVLAHSFR 67

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                IE IQD VE SL+ S H +  R Y+ YRE    +R
Sbjct: 68  NTPPDIERIQDVVEQSLIASNHFQTARAYIAYRESHKKLR 107


>gi|306829697|ref|ZP_07462886.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
 gi|304428048|gb|EFM31139.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
          Length = 112

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V        +   D+ +NL + T   +L  ++
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLDE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|328947069|ref|YP_004364406.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
 gi|328447393|gb|AEB13109.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
          Length = 725

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    +D +KIS AI KA + V      +  +++ I+ ++        ++ + 
Sbjct: 1   MKIIKRSGAEAIYDRNKISTAIRKANVQVRESHRLKESQIESIVDDIE-------IECHN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           S   +++EDIQD VE  +MQ+G +++ + Y+ YR
Sbjct: 54  SGHALNVEDIQDLVENGIMQNGAYEVAKLYITYR 87


>gi|313158565|gb|EFR57959.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes sp.
           HGB5]
          Length = 741

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 14/104 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G   +F   KI RA+ KAF++V G  A             T+  +T +L 
Sbjct: 3   ISELYIVKRDGKRKAFSVEKIKRAVRKAFLSV-GSYA-------------TDDDITSILS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +  + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R
Sbjct: 49  RVHVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHTEER 92


>gi|251783466|ref|YP_002997771.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392098|dbj|BAH82557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 732

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V    A  S  ++  ++ ++E+ +  +  + +
Sbjct: 15  IKVIKRDGRLVNFDATKIYSALLKASMKV----ARMSPLIEAKLEAISERVIAEI--NER 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 69  FPTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|15211868|emb|CAC51103.1| ribonucleotide reductase large subunit [Bacillus sp. M1321]
          Length = 104

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    +PD
Sbjct: 4   MKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPD 63

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F++   ++  + +F P  V   +  Y  E +I
Sbjct: 64  KFIELAREDKDYYMFYPHSVYKEYGQYLDEMDI 96


>gi|154489787|ref|ZP_02030048.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
 gi|154089512|gb|EDN88556.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
          Length = 775

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E  G  R + V+ I  +++ +  +++       
Sbjct: 45  VIKRDGRIVGFNEEKIATAIRKAMLHTEN-GEDREL-VRQITDHISFKGDSQMT------ 96

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 97  ----VEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKT 135


>gi|34497867|ref|NP_902082.1| anaerobic ribonucleoside triphosphate reductase [Chromobacterium
           violaceum ATCC 12472]
 gi|34103723|gb|AAQ60084.1| ribonucleoside-triphosphate reductase [Chromobacterium violaceum
           ATCC 12472]
          Length = 712

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 10/110 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V  FD  KI+ A  +A MA    G +   R+   I +  E+   +L +  +
Sbjct: 2   LQVSKRDGAVVGFDIGKIANACQRAAMAA---GHAEPARLALEIASQVERECRQLARDGR 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS--HSK 136
               + I  IQ +VE +LMQ  + ++ R Y+ YR +R +VRA  S  H+K
Sbjct: 59  ----LDIPAIQKRVEDALMQR-YPEVARVYIEYRHDRDNVRARGSELHAK 103


>gi|52549681|gb|AAU83530.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos30H9]
          Length = 748

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA  A     +  + ++   + NL +Q + R       
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKAGAATGEFDSEIAQKLTLKVLNLAQQAIPRD------ 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 58  --IPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSKANVD 104


>gi|11762259|gb|AAG40404.1|AF325052_1 At2g21790 [Arabidopsis thaliana]
          Length = 104

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+
Sbjct: 2   AADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTV 59


>gi|291521908|emb|CBK80201.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Coprococcus catus GD/7]
          Length = 776

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KRNG + +FD  KI  AI +A MAVE +     +     +  LT++  ++L      
Sbjct: 4   KIQKRNGQMVAFDSVKILNAISRANMAVEDE-----VMEPADLSYLTQKVCSQL----NP 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +V +E +QD VE +L++  + K  + Y+LYR E + +R  +S
Sbjct: 55  DEVVTVEHVQDVVEETLIRFDYAKTAKAYILYRAEHTKIRQTES 98


>gi|282851731|ref|ZP_06261095.1| ribonucleotide reductase, all-alpha domain protein [Lactobacillus
           gasseri 224-1]
 gi|282557134|gb|EFB62732.1| ribonucleotide reductase, all-alpha domain protein [Lactobacillus
           gasseri 224-1]
          Length = 217

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           L Y ++F+F  ++G    Y  Y L  N ++ ++ + F  R  M         E+ A+   
Sbjct: 85  LAYAQNFSFLNFMGAAKFYKAYALKTNDNK-QVLERFEDRAVMNALFLADGNEELALNLV 143

Query: 344 NLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             + S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 144 KDIISNRFQPATPTFLNAGRKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 203

Query: 403 DWTPVRGLGAHI 414
             T +R LGA I
Sbjct: 204 CLTNLRELGAPI 215


>gi|327313621|ref|YP_004329058.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
 gi|326946134|gb|AEA22019.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
          Length = 718

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V       ++    II +L  Q      
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVNEPTDLGTM--SKIIADLDIQND---- 55

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                   + +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R
Sbjct: 56  --------IKVEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDR 92


>gi|322374031|ref|ZP_08048565.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
 gi|321276997|gb|EFX54068.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
          Length = 734

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD SKI  AI+KA  A+        ++++ I   +  +   R  Q+  
Sbjct: 15  IKVIKRDGRMVAFDSSKIYEAILKASDAITPVTPLIEVKLESIANRIVAEINDRFSQN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ  VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----VKIYEIQSIVEHELLSANEYAIAQEYINYRTKRDFERS 110


>gi|332881385|ref|ZP_08449035.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680761|gb|EGJ53708.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 737

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 16/105 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH--NK 88
           V+KR+G +  F+  KI  A+ KA +  E                  E+ +  + +H  N+
Sbjct: 5   VVKRDGRIVGFNARKIGDAVRKAMVHTEA--------------GENEELIHLICEHVANR 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 51  GKVQMTVEEIQDAVEVELMKSRRKDVAQKYIAYRNQRSIARKAKT 95


>gi|328464293|gb|EGF35723.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus MTCC 5463]
          Length = 217

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 24/180 (13%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLAND---------------------LKYERDFAF-EY 295
           +Y+E  ++ R+   + ++  L YL ++                     L Y ++F+F  +
Sbjct: 37  QYLENHIEPRMKKFASLEEKLAYLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNF 96

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +G    Y  Y L  N ++ +  + F  R  M         E+ A+     + S  F  +T
Sbjct: 97  MGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLVKDIISNRFQPAT 155

Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R LGA I
Sbjct: 156 PTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPI 215


>gi|329768462|ref|ZP_08259953.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
 gi|328836795|gb|EGF86445.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
          Length = 727

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  FD  KI +AI KA  +V GK  + S+ +  I+ N+  +   R   +    
Sbjct: 23  VIKRDGRIVKFDAEKIYKAIEKAIHSVFGK--NHSVNIDGIVDNVIIEIGNRFKDN---- 76

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             + I ++Q+ VE +L+  G   I  EYV YR  R
Sbjct: 77  --IKIYELQNIVEHTLLTLGEEAIYEEYVSYRSMR 109


>gi|163857400|ref|YP_001631698.1| anaerobic ribonucleoside triphosphate reductase [Bordetella petrii
           DSM 12804]
 gi|163261128|emb|CAP43430.1| anaerobic ribonucleoside-triphosphate reductase [Bordetella petrii]
          Length = 668

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           Q++KR+G V +FD +KI  AI  A  A  E   A+  I        L  + V RL  H  
Sbjct: 10  QILKRDGRVVAFDGAKIVHAIAAAGQATGEVDAAAAEI--------LGARVVARLAGH-- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             L   IE IQ+ VE +L+++G     R Y++YRE  + +R+ Q
Sbjct: 60  --LCPGIETIQNLVEEALVEAGCWHTARAYIVYRERHARLRSLQ 101


>gi|52549915|gb|AAU83764.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos33H6]
          Length = 748

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA  AV G+  S      +I + LT + V  L Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKA-GAVTGEFDS------EIAQKLTLK-VLNLAQQAIP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 56  RDIPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVD 104


>gi|332297833|ref|YP_004439755.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
 gi|332180936|gb|AEE16624.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
          Length = 706

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            V+KR+G V  +D SKIS AI KA  AVE +    ++ ++ D +++     +    +H+ 
Sbjct: 28  HVVKRSGEVEDYDRSKISAAIGKAITAVEKRPDPDKAEQLTDAVEDRLRLMMAGRHEHS- 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  IE+IQD VE  L+++    I + Y+LYR     +R
Sbjct: 87  ---IPAIEEIQDIVETVLIENNAVTIAKAYILYRARHEAIR 124


>gi|288942003|ref|YP_003444243.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
 gi|288897375|gb|ADC63211.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
          Length = 683

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G    FD  KI  AI +A  A    GA+ +         L  Q +  L     
Sbjct: 12  TRVVKRDGQEVRFDAGKIESAIRRAGQASGEFGAAEA-------SLLAAQAIKVLTHRFS 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  IE IQD VE +L+ + H +  R Y++YRE+ + +R
Sbjct: 65  DGRLPDIEGIQDVVEQTLIAANHFETARAYIVYREQHNKLR 105


>gi|268592801|ref|ZP_06127022.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
 gi|291311585|gb|EFE52038.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
          Length = 714

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  AV  K     ++V  ++   TEQ  +R        
Sbjct: 7   VIKRDGCQVGFDLPRIQEAVKRAAAAVNVKDDDYCLQVASVV---TEQLCSRDR------ 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 58  --VDIADIQDAVENQLMAGPYKDLARAYIEYRHDRDSEREKRSQLTHD 103


>gi|325854308|ref|ZP_08171507.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
 gi|325484102|gb|EGC87036.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
          Length = 718

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V       ++    II +L  Q      
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVNEPTDLGTM--SKIIADLDIQND---- 55

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                   + +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R
Sbjct: 56  --------IKVEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDR 92


>gi|168187697|ref|ZP_02622332.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294428|gb|EDS76561.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 703

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD   I+ AI  +  A E   A +   V ++ + + EQ   R  +     
Sbjct: 4   VVKRDGRRVPFDSINITNAIKGS--ADEIAFALKESEVIELTQKVIEQIELRDYKE---- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH
Sbjct: 58  --ISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSH 99


>gi|330503314|ref|YP_004380183.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
 gi|328917600|gb|AEB58431.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
          Length = 672

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F+ +KI RAI  A  A    G   +I      K L++  + RL +     
Sbjct: 13  LFKRDGQEVPFEGAKIERAITAAGQAT---GEFAAIEA----KALSDAVLARLTEFRS-- 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E +QD+VE  LM++G+++  R Y++YRE    +R  + H
Sbjct: 64  --LDVEQVQDRVEQVLMEAGYYQTARAYIVYRERHGRLRRDRKH 105


>gi|294675471|ref|YP_003576087.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294473461|gb|ADE82850.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 746

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+  K+  AI KA +  + KG           + L  Q   R+ Q  +S 
Sbjct: 5   VKKRDGRIVGFNEQKVMAAIRKAMLHTD-KGED---------ERLLYQITDRIAQRGESQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E+IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EEIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|224367600|ref|YP_002601763.1| anaerobic ribonucleoside triphosphate reductase [Desulfobacterium
           autotrophicum HRM2]
 gi|223690316|gb|ACN13599.1| NrdD [Desulfobacterium autotrophicum HRM2]
          Length = 696

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G V  FD SKI  AI KA  A  G+   R        K LT + +T L ++ +    
Sbjct: 7   KRDGRVAQFDSSKIVDAIAKAGKAT-GEFDEREA------KKLTLKVIT-LARNLRLGKC 58

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +E+IQD VE  L+ S  +K  + Y++YRE+R+ +R
Sbjct: 59  PEVEEIQDIVERILLDSPFYKTAKAYIIYREQRNQIR 95


>gi|331092351|ref|ZP_08341177.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401375|gb|EGG80961.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 764

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  +D SKI+ A++KA  A     A+ + +V +         V   L+     
Sbjct: 8   IKKRDGRIVLYDESKIASAVLKAMEAAGEGDATDAAQVAN--------DVHMELEKLPED 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   IE +QD VE  LM++G  +  ++++LYR +R+++R A +
Sbjct: 60  MPPQIEQVQDAVERELMKNGFEQSAKKFILYRAKRTNIREANT 102


>gi|295102976|emb|CBL00520.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 723

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q      Q N+
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGQARLSREQITQIAAAVTDQC----QQLNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E++QD VE  LM    H + R Y+ YR
Sbjct: 57  A---VSVEEVQDLVENQLMDIQAHDVARHYITYR 87


>gi|160943676|ref|ZP_02090908.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445131|gb|EDP22134.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
          Length = 723

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q      Q N+
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGQARLSREQITQIAAAVTDQC----QQLNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E++QD VE  LM    H + R Y+ YR
Sbjct: 57  A---VSVEEVQDLVENQLMDIQAHDVARHYITYR 87


>gi|301331665|gb|ADK70787.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331725|gb|ADK70826.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331785|gb|ADK70863.1| U28 [Elephant endotheliotropic herpesvirus 1B]
 gi|301331844|gb|ADK70893.1| U28 [Elephant endotheliotropic herpesvirus 1B]
          Length = 185

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT+  + +  VS++  P++ N + K     +  V N  L  E K  + +   +  D +  
Sbjct: 2   PTSGTSQVSSVSEAFYPTFSNFHSKITTGVEVLVSNKELQREFKMYNNYLSNI--DWEVT 59

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
             S         D   I+  AFE D   LI+  + R  ++D +QS++L++ E        
Sbjct: 60  KASETYFTEPEWDKLMIYKNAFEYDQEDLIDMCADRAPFVDHSQSMSLFVREEDITGCRH 119

Query: 888 IY---RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN--AVPVTDPNSSTHSLGIP 941
           IY   R A   GLKT  YYLR +     +++ L+ ++ K +   VP+  P SST +L   
Sbjct: 120 IYSLIRHAHKRGLKTGMYYLRIK-----KQARLRDLEKKSDVFGVPLCCP-SSTSALVKK 173

Query: 942 SSCTSDTEC 950
           S   SD  C
Sbjct: 174 SCPESDNTC 182


>gi|115525180|ref|YP_782091.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
 gi|115519127|gb|ABJ07111.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
          Length = 673

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  KI  AI +A     GK  +   R +    +L      +++ H   
Sbjct: 12  RVIKRSGEQAPFDSGKIHSAIERA-----GKATAEFDRPE---ADLLAIQAIKVISHRFI 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               HIE IQD VE  L+ + H    R +++YRE+R+ +R
Sbjct: 64  DQAPHIEQIQDVVEQVLISANHFATARAFIVYREQRARLR 103


>gi|299821095|ref|ZP_07052983.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
 gi|299816760|gb|EFI83996.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
          Length = 717

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR-SIRVQDIIKNLTEQTV 80
           + EK     V KR+G    FDP KI +AI+ A  A E    ++  + +++I+  L   TV
Sbjct: 2   YTEKETQQVVEKRDGRQVDFDPGKIRKAILAAMNAQETDAENQIDVFLENIVNELANDTV 61

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                       + IE IQ+ VE  LM+S +  + R Y+ YR +R   R
Sbjct: 62  ------------LTIEKIQETVENVLMKSEYPDVARAYIEYRHDRDSER 98


>gi|270292547|ref|ZP_06198758.1| ATP cone domain-containing protein [Streptococcus sp. M143]
 gi|270278526|gb|EFA24372.1| ATP cone domain-containing protein [Streptococcus sp. M143]
          Length = 112

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|258646237|ref|ZP_05733706.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
 gi|260403624|gb|EEW97171.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
          Length = 735

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +FD +KI  AI KA   V G     + +++ I  N+ +    ++  +  +A
Sbjct: 15  VIKRNGQEVTFDITKIINAIGKANHEVAGIHQMNNFQIRAIADNIAK----KISNYPHAA 70

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              ++EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 71  ---NVEDIQDMVETGIMEMRGYEVAQKYVRYRYKREISRKSNT 110


>gi|332886401|gb|EGK06645.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas
           mossii DSM 22836]
          Length = 735

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVE-GKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  A+ KA +  E G+ +    R+ D +     + +T        
Sbjct: 5   VVKRDGRIVGFNEEKIMAAVRKAMLHTEQGEDSILIRRITDYVSCQGNEQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM+S   ++ ++Y+ YR++RS  R A++
Sbjct: 57  -----VEQIQDMVEMELMKSPRKEVAKKYIAYRDKRSIARKAKT 95


>gi|160895081|ref|ZP_02075855.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
 gi|156863512|gb|EDO56943.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
          Length = 708

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   S+D SKI  AI KA   VE        ++++II  +  +   R+L    
Sbjct: 1   MQVIKRDGRAVSYDRSKIIVAIQKANAEVEDCEKISEEKIEEIIDGIEAKNRKRML---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S
Sbjct: 57  ------VEDIQDIIEQKLMAEGKFVLAKTYIIYRYSRELIRKANTTDDS 99


>gi|288800589|ref|ZP_06406047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332802|gb|EFC71282.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 736

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KIS AI KA +       S          NL +Q   R+     S 
Sbjct: 5   VVKRDGRIVGFNELKISGAIRKAMLHTNNGEDS----------NLIQQITDRISMSGNSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E+IQ++VE  LM+S    + R Y+ YR  R+  R A++
Sbjct: 55  MTV--EEIQNKVENELMKSRRKDVARAYISYRNLRNVARKAKT 95


>gi|317496440|ref|ZP_07954792.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
 gi|316913455|gb|EFV34949.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
          Length = 727

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + VIKR+G V  FD  KI +AI KA  +V G+    S+ +  I+ N+  +   R   +
Sbjct: 19  KNLLVIKRDGRVVKFDADKIYKAIEKAVKSVFGE--KHSVNIDSIVDNVIIEIGNRFKDN 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                 + I ++Q+ VE +L+  G   I  EYV YR  R
Sbjct: 77  ------IKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMR 109


>gi|313890379|ref|ZP_07824010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121222|gb|EFR44330.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 731

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + SFD +KI  A++KA + V       S  V+  ++ ++E+ V  +   ++
Sbjct: 14  IKVIKRDGRLVSFDTTKIYSALLKASIEV----TKMSPLVEAKLEAISERVVAEI--RDR 67

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 68  FPKNVKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARS 109


>gi|154496758|ref|ZP_02035454.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
 gi|150274010|gb|EDN01110.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
          Length = 773

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL-LQHNKS 89
           + KR+G +  FD  KI  AI +AF A    G       +D  + L ++ ++ L ++ N+ 
Sbjct: 6   IRKRDGRLMPFDEEKIVHAIARAFNATYKPGH------EDTARKLADEVLSILEVEGNQQ 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + HI+D+   VE  LM  G+ +  + Y+LYR +RS VR
Sbjct: 60  PDVEHIQDL---VERVLMDDGYIQTAKAYILYRSDRSRVR 96


>gi|94989434|ref|YP_597535.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94993323|ref|YP_601422.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94542942|gb|ABF32991.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94546831|gb|ABF36878.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARS 110


>gi|330996499|ref|ZP_08320381.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329573055|gb|EGG54674.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 737

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH--NK 88
           V+KR+G +  F+  KI  AI KA +  E                  E+ +  + +H  N+
Sbjct: 5   VVKRDGRIVGFNARKIGDAIRKAMVHTEA--------------GENEELIHLICEHVTNR 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 51  GKAQMTVEEIQDAVEMELMKSRRKDVAQKYIAYRNQRSIARKAKT 95


>gi|332523314|ref|ZP_08399566.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314578|gb|EGJ27563.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 731

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD +KI  A++KA M V       S  V+  ++ ++E+ V  +   ++
Sbjct: 14  IKVIKRDGRLVPFDTTKIYSALLKASMEV----TPMSPLVEAKLEAISERVVAEI--RDR 67

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 68  FPKNVKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARS 109


>gi|306826483|ref|ZP_07459794.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
 gi|304431342|gb|EFM34340.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|21911330|ref|NP_665598.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS315]
 gi|28896704|ref|NP_803054.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes SSI-1]
 gi|21905545|gb|AAM80401.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS315]
 gi|28811958|dbj|BAC64887.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes SSI-1]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARS 110


>gi|94991370|ref|YP_599470.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94544878|gb|ABF34926.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|71904439|ref|YP_281242.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71803534|gb|AAX72887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|15675860|ref|NP_270034.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes M1 GAS]
 gi|19746977|ref|NP_608113.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS8232]
 gi|50915138|ref|YP_061110.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808133|ref|ZP_00365919.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|139474550|ref|YP_001129266.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209560220|ref|YP_002286692.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes NZ131]
 gi|13623093|gb|AAK34755.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M1 GAS]
 gi|19749231|gb|AAL98612.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS8232]
 gi|50904212|gb|AAT87927.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|134272797|emb|CAM31074.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209541421|gb|ACI61997.1| Ribonucleotide reductase of class III (anaerobic), large subunit
           [Streptococcus pyogenes NZ131]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|94995281|ref|YP_603379.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|94548789|gb|ABF38835.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|71911606|ref|YP_283156.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|71854388|gb|AAZ52411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
          Length = 732

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R   +  
Sbjct: 15  IKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERFPTN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARS 110


>gi|328553044|gb|AEB23536.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 240

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A+E  + +    +  +TPT  N+G  R  ++ SCFL  V D L  I  A+  +  L+K 
Sbjct: 135 KAIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVGDSLNDISRAIDISMQLSKL 194

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 195 GGGVALNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 240


>gi|167756187|ref|ZP_02428314.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
 gi|167704179|gb|EDS18758.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
          Length = 772

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G + +F+  KI+ AI KAF A  GK   ++    +I K     TV   L+  KS L 
Sbjct: 12  KRDGRLVAFELDKIAGAIYKAFEASGGKYELKN--AMNIAK-----TVETKLEKKKSELP 64

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S
Sbjct: 65  T-VELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKS 104


>gi|83592612|ref|YP_426364.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575526|gb|ABC22077.1| ATP-cone [Rhodospirillum rubrum ATCC 11170]
          Length = 673

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P +  P P       V+KR+G    FD  KI  AI +A  A    G    I  Q     L
Sbjct: 3   PEIVSPPP------GVVKRSGRTVPFDAVKIRSAIERAGKAT---GDFDPIEAQ-----L 48

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 ++L H  +    HIE IQD VE  L+ + H    R Y++YRE+ + +R
Sbjct: 49  LAIQAVKVLSHRFTEDAPHIEQIQDVVEQVLISANHFATARAYIVYREQHARLR 102


>gi|237734134|ref|ZP_04564615.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229382694|gb|EEO32785.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 772

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G + +F+  KI+ AI KAF A  GK   ++    +I K     TV   L+  KS L 
Sbjct: 12  KRDGRLVAFELDKIAGAIYKAFEASGGKYELKN--AMNIAK-----TVETKLEKKKSELP 64

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S
Sbjct: 65  T-VELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKS 104


>gi|15211874|emb|CAC51106.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 104

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 49/93 (52%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD
Sbjct: 4   MKLLDNAFRYADQMGQRQGSGAAYLSVFHPDIIDFLDTKKISADEDVRVKTLSIGVVIPD 63

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F++   ++  + +F P  V   +  Y  E  I
Sbjct: 64  KFIELAREDKDYYMFYPHSVYKEYGQYLDEMSI 96


>gi|319937925|ref|ZP_08012325.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
 gi|319806831|gb|EFW03470.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
          Length = 587

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++IKRNG +  FD  KI +AI+ A   +       G +R I  +   + L ++    L+
Sbjct: 17  MKIIKRNGSLEDFDRGKIEKAILGAMEDLGADYRNAGVARRISREVEREFLDKEAQETLI 76

Query: 85  QHNKSA-LIVH----IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            H  +  L++H    I+DI+D+VE  LM S    + R+Y+ YR ++   R    + KS
Sbjct: 77  AHKDNPNLLLHYQVPIKDIEDRVEEKLMGSHCKDVARQYIRYRYKKKQQRDKYENIKS 134


>gi|313113153|ref|ZP_07798780.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624547|gb|EFQ07875.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 723

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q        N+
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVSGQSRLTKDQITQIAAAVTDQCQAL----NR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E++QD VE  LM    H + R Y+ YR
Sbjct: 57  A---VSVEEVQDMVENQLMDIKAHDVARHYITYR 87


>gi|255283025|ref|ZP_05347580.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255266327|gb|EET59532.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 771

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P+ IK     KRNG   +FD +KI  AI KA         + + +V+ I     E+ V  
Sbjct: 9   PDTIK-----KRNGRPVTFDRTKIENAIRKA---------NDAAKVEAIAPCQFEKLVDE 54

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           ++       +  +E +QD VE  L+ +G  K  + Y+LYR E + VR  ++
Sbjct: 55  VIAFIPEGEVPDVEQVQDLVEERLIANGFAKTAKAYILYRAEHTKVRKTEA 105


>gi|298373461|ref|ZP_06983450.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274513|gb|EFI16065.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 697

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + ++KR+G    F   KI  AI KAF++V+                 T+     +L  
Sbjct: 4   KEIYIVKRDGKSVPFSLDKIKSAIAKAFLSVDTFA--------------TDDDFVAILSR 49

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              A  + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R
Sbjct: 50  IHVANGMSVEEIQNQVETALMAEKYFAVAKSYMLYRQKHTETR 92


>gi|189462188|ref|ZP_03010973.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
 gi|189431091|gb|EDV00076.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
          Length = 826

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F PSKI+ AI KAF A         I  Q+    L ++   R++ H ++ 
Sbjct: 39  IIKRDGKRENFSPSKITNAISKAFNAT-------GIAHQE---ELIDEITQRVINHFENP 88

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            I  +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 89  TI-GVEEIQDLVETELMKV-QPEVAKKYIIYRQWRNTERDRKTQIK 132


>gi|317479915|ref|ZP_07939030.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
 gi|316903860|gb|EFV25699.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
          Length = 735

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  + KG       +D+   L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTD-KG-------EDL--QLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|160889395|ref|ZP_02070398.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270296553|ref|ZP_06202752.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
 gi|156860912|gb|EDO54343.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270272540|gb|EFA18403.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
          Length = 735

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  + KG       +D+   L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTD-KG-------EDL--QLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|319939165|ref|ZP_08013529.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
 gi|319812215|gb|EFW08481.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
          Length = 112

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG VT F+P KI +AI+KA   V        +   D+ +NL   T   +L   +
Sbjct: 1   MQVIKRNGEVTDFNPDKIYQAILKAAQTV-------YVLTDDLRQNLALVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 54  AGVERATISMIQSMVENRLLGAGYITIAEHYISYRLQR 91


>gi|281422174|ref|ZP_06253173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
 gi|281403679|gb|EFB34359.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
          Length = 739

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  + KG   +         L EQ    +    KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMLHTD-KGEDTT---------LIEQITDHISYRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD +E  LM+S    + ++Y+ YR +R+  R A++
Sbjct: 55  MSV--EAIQDAIELELMKSARKDVAQKYIAYRNQRNIARKAKT 95


>gi|293365648|ref|ZP_06612357.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|306825031|ref|ZP_07458374.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307703596|ref|ZP_07640538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315613358|ref|ZP_07888267.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|322375430|ref|ZP_08049943.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|331266169|ref|YP_004325799.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
 gi|291316016|gb|EFE56460.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|304432858|gb|EFM35831.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307623003|gb|EFO01998.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315314593|gb|EFU62636.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|321279693|gb|EFX56733.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|326682841|emb|CBZ00458.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
          Length = 112

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  FDP KI +A++KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRNGEIAEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|76665047|emb|CAJ17966.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 230

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T +R 
Sbjct: 138 FTPATPTLLNTGKKHRGEFVSCFLLEASDSLNDIARINEFSTQLSKIGGGVSINITNLRA 197

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            G  I G  G  +GV+   K+ + +    +Q G
Sbjct: 198 KGESIKGIKGVCKGVVGVCKLLDHSFRYADQMG 230


>gi|282858815|ref|ZP_06267960.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
 gi|282588384|gb|EFB93544.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
          Length = 702

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   + KR+G    F   KI  AI+K F +V                +LT  TV+++L 
Sbjct: 3   MQNFTITKRDGSKELFSLDKIMGAILKGFESVNEP------------TDLT--TVSKILS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + K    + +E+IQ+QVE SLM+ G + + + +++YR + S+ R  Q   K
Sbjct: 49  NIKIHDDITVEEIQNQVEESLMKEGFYHVAKSFIVYRHQHSEDRETQEKIK 99


>gi|317133406|ref|YP_004092720.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471385|gb|ADU27989.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 781

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  G          D+   L E+ VT  +Q   
Sbjct: 3   TRIRKRDGREAPFNMEKIANAIYKAARANGGHD-------YDMAVALAEK-VTEEIQRRS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              I  +E IQD VE  L+++GH +  + Y+LYR  R+ VR
Sbjct: 55  GDSIPTVEGIQDIVEHVLIETGHARTAKAYILYRANRTRVR 95


>gi|194333736|ref|YP_002015596.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311554|gb|ACF45949.1| anaerobic ribonucleoside-triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
          Length = 715

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G +  FD  KI+ AI +A  ++       + R+ D         V   L  +  
Sbjct: 12  RIIKRDGTIVPFDREKITFAIFRAMRSIGKPDRGYAARLSD--------RVVERLGSDGP 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +E+IQD VE  L +S   +  + Y++YR + S +R A+
Sbjct: 64  DRIASVEEIQDLVERLLFESREFEAAKAYIVYRHQHSSLRQAK 106


>gi|218133064|ref|ZP_03461868.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991937|gb|EEC57941.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
          Length = 708

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    +D +KI  AI +A   V+ K      ++++I+ ++  + V  L     
Sbjct: 1   MKVIKRNGRQVEYDRNKIIVAIQRANDEVDEKEKITEGQIENIVASIENRNVDAL----- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM      + + Y++YR  R+ VR A +  +S
Sbjct: 56  -----KVEDIQDIIEQKLMAERKFILAKTYIIYRYTRALVRKANTTDES 99


>gi|52424688|ref|YP_087825.1| anaerobic ribonucleoside triphosphate reductase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306740|gb|AAU37240.1| NrdD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 711

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF+  +I  AI KA  AV        I  +     +++Q    + QHN++ 
Sbjct: 9   IIKRDGSRASFEIQRIINAIKKAAKAV-------GIDDERFCHLVSQQVFDEIFQHNQNE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    D
Sbjct: 62  --IDISRIQQFVENKLMASAYPQVARAYIEYRHDRDLAREKRSQLTKD 107


>gi|213419184|ref|ZP_03352250.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 205

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 43/231 (18%)

Query: 699 VELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+ERG  ++ F  S +  G +       D     A+VR   A   +   +R  W +L
Sbjct: 1   MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 60

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + + K   +G       F+ N
Sbjct: 61  RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 120

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E                       N++   D        A++I P  +I++ +   + +D
Sbjct: 121 E-----------------------NLDMYQD--------AYDIGPEKIIDTYAEATRHVD 149

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           Q  SL L+  D  + + ++     AW  G+K+ YY+R R   ++E + ++G
Sbjct: 150 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQ-LALESTEIEG 199


>gi|306834528|ref|ZP_07467641.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
 gi|304423330|gb|EFM26483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
          Length = 738

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIKR+G   +FD  KI  A++KA + V         +++ I  N+  +   R   + 
Sbjct: 14  AVKVIKRDGRSVNFDADKIYNALVKASINVTKMSPVVEAKLETISDNIIAEIFDRFKDN- 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  -----VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARS 110


>gi|330822767|ref|YP_004386070.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
 gi|329308139|gb|AEB82554.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
          Length = 676

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P P       VI+RNG   +FD  +I  AI +A  A    GA       D  + LT Q  
Sbjct: 5   PAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDFGA-------DEAQLLTAQ-A 56

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           T++L H        IE IQD VE +L+ + H +  R Y+ +R+  + +RA
Sbjct: 57  TKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRA 106


>gi|262274139|ref|ZP_06051951.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
 gi|262221949|gb|EEY73262.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
          Length = 706

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+GG   F+  +I  A+M A  AVE    + +  V D +       + + ++  +  
Sbjct: 5   VIKRDGGRVPFERQRIKDAVMSAAFAVEDMDEAYAAAVADGV-------LAQFMRDEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   +  + R Y+ YR +R  +R  +S
Sbjct: 56  --VDIHQIQDAVENHLMAGPYKAVARAYIEYRHDRDSIREKKS 96


>gi|315223014|ref|ZP_07864893.1| ATP cone domain protein [Streptococcus anginosus F0211]
 gi|315187964|gb|EFU21700.1| ATP cone domain protein [Streptococcus anginosus F0211]
          Length = 122

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG VT F+P KI +AI+KA   V        +   D+ +NL   T   +L   +
Sbjct: 11  MQVIKRNGEVTDFNPDKIYQAILKAAQTV-------YVLTDDLRQNLALVTKKVVLDLEE 63

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 64  AGVERATISMIQSMVENRLLGAGYITIAEHYISYRLQR 101


>gi|319760862|ref|YP_004124799.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
 gi|317115423|gb|ADU97911.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
          Length = 676

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P P       VI+RNG   +FD  +I  AI +A  A    GA       D  + LT Q  
Sbjct: 5   PAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDFGA-------DEAQLLTAQ-A 56

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           T++L H        IE IQD VE +L+ + H +  R Y+ +R+  + +RA
Sbjct: 57  TKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRA 106


>gi|164686917|ref|ZP_02210945.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
 gi|164604040|gb|EDQ97505.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
          Length = 786

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD + I++AI  A   V  K  +      +I + +  Q V+ LL      
Sbjct: 5   IKKRDGRKVLFDKNCITKAIFAAASEVAEKENTEP--NYEIAEGVAAQVVS-LLNKKFVD 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            I  +EDIQD V   L+++GH K +  ++LYR ERS +R ++S
Sbjct: 62  KIPTVEDIQDAVVKVLIENGHAKTSEAFILYRNERSRIRNSKS 104


>gi|300694471|ref|YP_003750444.1| ribonucleotide reductase oxidoreductase protein (nrdd) [Ralstonia
           solanacearum PSI07]
 gi|299076508|emb|CBJ35833.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum PSI07]
          Length = 683

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD  KI +AI  A        A+R   +  +  +LT + + RL     
Sbjct: 4   TQVTKRDGMMVDFDAEKIRQAIAAA------GHATREFDL-PVAADLTTRVIGRLADMPC 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA ++
Sbjct: 57  PG----IETIQNAVEETLVAAGYWRTARAYIVYREQHARLRALEA 97


>gi|95930914|ref|ZP_01313644.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133040|gb|EAT14709.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 674

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G    FD  +I  AI +A     GK        +  +  LT+QT+ ++L+H  
Sbjct: 17  AKVVKRDGTSVPFDSERIRFAIARA-----GKVTGEFDESEAAL--LTQQTL-KVLRHRF 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                 +E IQD VE +L+ + H    R YV+YRE+   +R  Q
Sbjct: 69  PFQAPKVEQIQDVVEQTLISANHFATLRAYVVYREQHQKLRQDQ 112


>gi|332671990|ref|YP_004454998.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
 gi|332341028|gb|AEE47611.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
          Length = 752

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-KGASRSIRVQDIIKNLTEQTVT 81
           P    G+ V KR+G V  FDP ++  A+ +AF  V G  G  + + + ++++ +  +   
Sbjct: 25  PSTAAGLVVRKRDGRVLPFDPIRVHSALGRAFAHVHGLLGPLQDLTIAELVERIDAELAA 84

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           R          V I +IQ+ VE +L+++  +++   Y+ YR +R   R+
Sbjct: 85  RFTGE------VRIYEIQNVVEHTLLEAREYEVAEAYIDYRVQRDLARS 127


>gi|299069356|emb|CBJ40622.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CMR15]
          Length = 683

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 19/109 (17%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G QV KR+G +  FD  KI +AI  A  A                     Q   RL  
Sbjct: 1   MTGTQVTKRDGSLAPFDGQKIRQAIAAAGQAT---------------NEFDTQEAQRLSA 45

Query: 86  HNKSAL----IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           H    L       IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA
Sbjct: 46  HVIGQLAGLACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRA 94


>gi|167957418|ref|ZP_02544492.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 78

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           QKW+DQA S N+YL+     +   IY +AW  GLKTTYYL  +     E++T+K
Sbjct: 1   QKWVDQAISRNMYLETRDIDEYVKIYSEAWRRGLKTTYYLHVKPRHQSEQTTVK 54


>gi|323128211|gb|ADX25508.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V       S  ++  ++ ++E+ +  +  + +
Sbjct: 15  IKVIKRDGRLVNFDATKIYSALLKASMKV----TRMSPLIEAKLEAISERVIAEI--NER 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 69  FPTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|226329644|ref|ZP_03805162.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
 gi|225202830|gb|EEG85184.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
          Length = 533

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A +A E       + V         Q+V++ L    + 
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRAAVACEITDDDYCVSVA--------QSVSQSLAGRSN- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQD VE  LM   H  + R Y+ YR +R   R
Sbjct: 56  --VDIREIQDAVENQLMAGKHKDVARAYIEYRHDRDVAR 92


>gi|228478027|ref|ZP_04062638.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250207|gb|EEK09460.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 734

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD SKI  AI+KA  A+         +++ I   +  +   R  Q+  
Sbjct: 15  IKVIKRDGRMVVFDSSKIYEAILKASEAITPITPLIEAKLEGIANRIVAEINDRFTQN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|322412843|gb|EFY03751.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 732

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA M V       S  ++  ++ ++E+ +  +  + +
Sbjct: 15  IKVIKRDGRLVNFDTTKIYSALLKASMKV----TRMSPLIEAKLEAISERVIAEI--NER 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 69  FPTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 110


>gi|322515844|ref|ZP_08068788.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
 gi|322125730|gb|EFX97052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
          Length = 734

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G +  FD SKI  AI+KA  A+          +  II+   E   TR++   +
Sbjct: 15  IKVIKRDGRMVVFDSSKIYEAILKASEAI--------TPITPIIETKLEGIATRIVAEIN 66

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++ +  + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 67  DRFSHNIKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|322388113|ref|ZP_08061719.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|322392172|ref|ZP_08065634.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
 gi|321141134|gb|EFX36633.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|321145072|gb|EFX40471.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
          Length = 112

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +AI+KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRDGQVADFDPDKIYQAILKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|157150561|ref|YP_001450490.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262282234|ref|ZP_06060002.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
 gi|157075355|gb|ABV10038.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262261525|gb|EEY80223.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
          Length = 112

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLQE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVESRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|281357522|ref|ZP_06244010.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281316125|gb|EFB00151.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 720

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G    F  +KI  A+ KA   VE K A  + +++ I      + V+ + +   
Sbjct: 1   MKIVKRSGAEEEFSVAKILAAVTKANQTVEFKNALTAQQIEAI-----GEYVSGICKALD 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            AL   +E+IQD VE  +MQ G  ++ ++Y+ YR  R+ +R A +
Sbjct: 56  RAL--SVEEIQDIVETRIMQEGAFEVAKKYITYRYVRNLIRQANT 98


>gi|320547636|ref|ZP_08041921.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
 gi|320447711|gb|EFW88469.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
          Length = 738

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   +  
Sbjct: 15  VKVIKRDGRSVNFDADKIYNALLKASNNVTKMSPVIEAKLESISDNIVAEIFDRFKDN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  ----VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARS 110


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +K   +IKR+     F  +KIS AI+KA   V  G  A   +    I KN+ E  + R  
Sbjct: 1   MKITHLIKRDFTTKPFQLNKISNAILKAMTTVNHGDKADADL----ISKNVHEALLER-- 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +         +E++QD VE  LM+ G   + + Y+LYR E+S  R +    K
Sbjct: 55  EETVVNYTPTVEEVQDFVETKLMEGGFFDVAKAYILYRNEQSQKRKSNIFEK 106


>gi|169343319|ref|ZP_02864329.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
 gi|169298617|gb|EDS80698.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
          Length = 710

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E++K + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +
Sbjct: 2   EELKMLHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYI 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               K+   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  EMSGKTD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 103


>gi|224539203|ref|ZP_03679742.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519175|gb|EEF88280.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  + KG    +     I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTD-KGEDLQL-----IRQITDHISF------KGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|325969858|ref|YP_004246049.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
 gi|324025096|gb|ADY11855.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
          Length = 691

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 13/108 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G V   +  KI  AI KA +A     +S+ +   ++         + +L   K 
Sbjct: 4   QVVKRDGQVVLCEVQKIINAITKAAVA-----SSQDVDALEV--------ASLVLARMKG 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              + +E IQD VE +LM++G  K  + Y+LYR +R  +R  ++  K+
Sbjct: 51  NNPITVEQIQDLVEQALMETGATKTAKAYILYRSQRERMREGKALIKA 98


>gi|189465495|ref|ZP_03014280.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
 gi|189437769|gb|EDV06754.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  + KG    +     I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTD-KGEDLQL-----IRQITDHISF------KGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|323351559|ref|ZP_08087213.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|322122045|gb|EFX93771.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|324991140|gb|EGC23074.1| ATP cone domain protein [Streptococcus sanguinis SK353]
 gi|324992890|gb|EGC24810.1| ATP cone domain protein [Streptococcus sanguinis SK405]
 gi|324994473|gb|EGC26386.1| ATP cone domain protein [Streptococcus sanguinis SK678]
 gi|325687472|gb|EGD29493.1| ATP cone domain protein [Streptococcus sanguinis SK72]
 gi|325689691|gb|EGD31695.1| ATP cone domain protein [Streptococcus sanguinis SK115]
 gi|325696517|gb|EGD38407.1| ATP cone domain protein [Streptococcus sanguinis SK160]
 gi|327460343|gb|EGF06680.1| ATP cone domain protein [Streptococcus sanguinis SK1057]
 gi|327462195|gb|EGF08522.1| ATP cone domain protein [Streptococcus sanguinis SK1]
 gi|327470024|gb|EGF15488.1| ATP cone domain protein [Streptococcus sanguinis SK330]
 gi|327474216|gb|EGF19623.1| ATP cone domain protein [Streptococcus sanguinis SK408]
 gi|327489683|gb|EGF21474.1| ATP cone domain protein [Streptococcus sanguinis SK1058]
 gi|328946296|gb|EGG40440.1| ATP cone domain protein [Streptococcus sanguinis SK1087]
 gi|332360873|gb|EGJ38679.1| ATP cone domain protein [Streptococcus sanguinis SK49]
 gi|332361190|gb|EGJ38994.1| ATP cone domain protein [Streptococcus sanguinis SK1056]
 gi|332366880|gb|EGJ44621.1| ATP cone domain protein [Streptococcus sanguinis SK1059]
          Length = 112

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 54  AKVERATISMIQSMVESRLLGAGYITIAEHYISYRLQR 91


>gi|157962440|ref|YP_001502474.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           pealeana ATCC 700345]
 gi|157847440|gb|ABV87939.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           pealeana ATCC 700345]
          Length = 705

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  + +V + +     QTV  L +     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVS----QTVAELEE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V+I D+QD VE  LM+  H  + R Y+ YR +R   R   S
Sbjct: 55  --VNIHDLQDSVENLLMEGPHKSLARVYIEYRHDRDVKREVSS 95


>gi|198277606|ref|ZP_03210137.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
 gi|198270104|gb|EDY94374.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
          Length = 794

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 12/108 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +F  +KI+ AI KAF   E  G  +     D+I   T Q V+       
Sbjct: 6   IRIIKRDGKQENFSAAKITNAIGKAF---EATGIPQQKEELDLI---TRQVVSHF----- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           S   + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++H K
Sbjct: 55  SQPTMGVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERDRKTHIK 101


>gi|310659559|ref|YP_003937280.1| ribonucleoside-triphosphate reductase [Clostridium sticklandii DSM
           519]
 gi|308826337|emb|CBH22375.1| Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium sticklandii]
          Length = 783

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFM-AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V KR+G +  FD  KI  AI KA    +EG   + S+ + + I    EQ         
Sbjct: 1   MKVEKRDGRIVEFDKIKIKNAIEKAMSETIEGIDEALSLMISNGIAEDFEQ--------- 51

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
              + V +++IQD VE  LM+S    + + Y++YR E+   R  +
Sbjct: 52  -RRVPVRVDEIQDMVEIMLMESPRKDVAKSYIIYRSEQDKTRPKK 95


>gi|206890756|ref|YP_002248349.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742694|gb|ACI21751.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 1385

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G +  FDP KI+ AI KA       G +      D  K LT + V  L +     
Sbjct: 5   IIKRDGRIVPFDPEKITVAISKA-------GKATGEFDYDTAKRLTIK-VLLLAEELIRD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              H+E+IQD VE  L+ S + K  + Y++YR++ + +R
Sbjct: 57  RDPHVEEIQDIVEEILLSSPYRKTAKAYIIYRDQHARMR 95


>gi|189485584|ref|YP_001956525.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287543|dbj|BAG14064.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 708

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG   +F+  KIS AI KA       G +     QD    L  + ++ LL   +  
Sbjct: 10  IVKRNGTKEAFNSKKISAAIAKA-------GETTGEFGQDTANKLAIKALSLLLDTIEDR 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E +QD VE  L+ S + K  R Y+LYR++ S +R   S
Sbjct: 63  KPT-VEKVQDAVEEVLLYSKYKKTARAYILYRDQHSKIREIYS 104


>gi|302672270|ref|YP_003832230.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
 gi|302396743|gb|ADL35648.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
          Length = 743

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 11/107 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE--QTVTRLLQH 86
           +++IKR+G    FD SKIS AI KA   V  +      ++ DI   + +   T+TR    
Sbjct: 1   MKIIKRSGKEVDFDVSKISAAIEKANKEVTEEKRLTHGQIIDIATGVEKLCATLTRA--- 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                   +E+IQD VE  LM++G   + R+Y+ YR + + VR + +
Sbjct: 58  ------ASVEEIQDMVEDGLMRAGKFDVARKYITYRYKHALVRKSNT 98


>gi|52548363|gb|AAU82212.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos11H11]
          Length = 746

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA +         + ++   + NL +Q + R       
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKAGVVTGEFDYEIAQKLCLKVLNLAQQAIPRD------ 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 58  --IPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVD 104


>gi|168177426|ref|ZP_02612090.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
 gi|182670415|gb|EDT82389.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|153938050|ref|YP_001389457.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|152933946|gb|ABS39444.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|295317561|gb|ADF97938.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. 230613]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|170760773|ref|YP_001785422.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407762|gb|ACA56173.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKKE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|313885613|ref|ZP_07819363.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619343|gb|EFR30782.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 746

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 16/139 (11%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLL 84
           +  +QVIKR+    +FD SKI  AI KA   VEG+ +S R + ++ ++  +      R  
Sbjct: 13  LASMQVIKRDKRQVAFDASKIQVAIEKAVTEVEGQVSSQRLVEIEALVAEILTTIQERFT 72

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAP 143
           +       ++I +IQ  VE  L+QS   ++   Y+       D R  Q  +++DA  I  
Sbjct: 73  RD------INIYEIQSIVEQHLLQSNMPEVAHAYI-------DYRVKQDFARADATNINH 119

Query: 144 KLKIMMD-DGTLISFNSKR 161
           +++ ++D D T+++ N+ +
Sbjct: 120 RIQSLLDQDKTVVNENANK 138


>gi|15902732|ref|NP_358282.1| hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|111658331|ref|ZP_01409019.1| hypothetical protein SpneT_02000471 [Streptococcus pneumoniae
           TIGR4]
 gi|116515795|ref|YP_816174.1| hypothetical protein SPD_0680 [Streptococcus pneumoniae D39]
 gi|118090036|ref|YP_873928.1| ATP cone domain-containing protein [Streptococcus pneumoniae TIGR4]
 gi|148985870|ref|ZP_01818964.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|148989862|ref|ZP_01821156.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992445|ref|ZP_01822140.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997142|ref|ZP_01824796.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|149003402|ref|ZP_01828291.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007662|ref|ZP_01831279.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010592|ref|ZP_01831963.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|149021646|ref|ZP_01835677.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484438|ref|ZP_02709390.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|168486207|ref|ZP_02710715.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488449|ref|ZP_02712648.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|168490869|ref|ZP_02715012.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|168492931|ref|ZP_02717074.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575441|ref|ZP_02721377.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|169833820|ref|YP_001694239.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683698|ref|YP_001835445.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|194397979|ref|YP_002037425.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|221231573|ref|YP_002510725.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854287|ref|YP_002735799.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225856453|ref|YP_002737964.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225858587|ref|YP_002740097.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225861318|ref|YP_002742827.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649422|ref|ZP_04523674.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821920|ref|ZP_04597765.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230987|ref|ZP_06964668.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254140|ref|ZP_06977726.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503216|ref|YP_003725156.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255807|ref|ZP_07341848.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|303260246|ref|ZP_07346217.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261452|ref|ZP_07347400.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264120|ref|ZP_07350041.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|303266269|ref|ZP_07352160.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|303268708|ref|ZP_07354498.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|307067384|ref|YP_003876350.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|307127671|ref|YP_003879702.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           670-6B]
 gi|15458277|gb|AAK99492.1| Hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|85720552|gb|ABC75778.1| ribonucleoside-diphosphate reductase, alpha subunit, truncation
           [Streptococcus pneumoniae TIGR4]
 gi|116076371|gb|ABJ54091.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147756842|gb|EDK63882.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|147758585|gb|EDK65583.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760817|gb|EDK67788.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|147765073|gb|EDK72002.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|147922016|gb|EDK73140.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|147924804|gb|EDK75888.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928762|gb|EDK79775.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930107|gb|EDK81093.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996322|gb|ACA36934.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042325|gb|EDT50371.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629032|gb|ACB89980.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|183570715|gb|EDT91243.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183573047|gb|EDT93575.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|183574590|gb|EDT95118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577037|gb|EDT97565.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578590|gb|EDT99118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|194357646|gb|ACF56094.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|220674033|emb|CAR68546.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720177|gb|ACO16031.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225723761|gb|ACO19614.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225724472|gb|ACO20324.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225726538|gb|ACO22389.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238811|gb|ADI69942.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793936|emb|CBW36332.1| ATP-binding protein [Streptococcus pneumoniae INV104]
 gi|301799793|emb|CBW32362.1| ATP-binding protein [Streptococcus pneumoniae OXC141]
 gi|301801624|emb|CBW34322.1| ATP-binding protein [Streptococcus pneumoniae INV200]
 gi|302597191|gb|EFL64296.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|302637586|gb|EFL68073.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638570|gb|EFL69034.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641768|gb|EFL72125.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|302644199|gb|EFL74455.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|302646525|gb|EFL76751.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|306408921|gb|ADM84348.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|306484733|gb|ADM91602.1| ATP cone domain protein [Streptococcus pneumoniae 670-6B]
 gi|327390136|gb|EGE88479.1| ATP cone domain protein [Streptococcus pneumoniae GA04375]
 gi|332073096|gb|EGI83575.1| ATP cone domain protein [Streptococcus pneumoniae GA17570]
 gi|332076058|gb|EGI86524.1| ATP cone domain protein [Streptococcus pneumoniae GA41301]
 gi|332077193|gb|EGI87655.1| ATP cone domain protein [Streptococcus pneumoniae GA17545]
 gi|332202642|gb|EGJ16711.1| ATP cone domain protein [Streptococcus pneumoniae GA41317]
 gi|332203933|gb|EGJ18000.1| ATP cone domain protein [Streptococcus pneumoniae GA47368]
 gi|332204787|gb|EGJ18852.1| ATP cone domain protein [Streptococcus pneumoniae GA47901]
          Length = 112

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  F+P KI +AI+KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRNGEIAEFNPDKIYQAILKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLQE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|253682276|ref|ZP_04863073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
 gi|253561988|gb|EES91440.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
          Length = 703

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ----- 85
           V+KR+G    FD  KI+ AI         KG++      +I  NL E  V  L Q     
Sbjct: 4   VVKRDGRRVPFDSIKITNAI---------KGSA-----DEIAFNLKESEVIELTQKVIHQ 49

Query: 86  -HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             +K+   + +E+IQ+ VE +L ++G+  I + Y  YR ER+ +R  +SH
Sbjct: 50  IEDKNCDEISVEEIQNIVENALQKNGYELIWKTYSNYRRERTKIREKKSH 99


>gi|170756294|ref|YP_001779720.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
 gi|169121506|gb|ACA45342.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|168182298|ref|ZP_02616962.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|237793411|ref|YP_002860963.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
 gi|182674680|gb|EDT86641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|229260713|gb|ACQ51746.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKKE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|148378101|ref|YP_001252642.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933790|ref|YP_001382500.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935349|ref|YP_001386052.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. Hall]
 gi|148287585|emb|CAL81650.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929834|gb|ABS35334.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931263|gb|ABS36762.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. Hall]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|15211861|emb|CAC51099.1| ribonucleotide reductase large subunit [Bacillus sp. M1918]
          Length = 104

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD
Sbjct: 4   MKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPD 63

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F++   ++  + +F P  V   +  Y  E  I
Sbjct: 64  KFIELAREDKDYYMFYPHSVYKEYGQYLDEMSI 96


>gi|256831157|ref|YP_003159885.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580333|gb|ACU91469.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 686

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G V S+   +I++AI+K+  A         I+   + K L  +  ++L    ++
Sbjct: 4   QIVKRDGRVESWSVDRIAQAILKSLNA-------SGIKDPILAKRLAGKVESKL----EA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +   E +QD VE  LM+S  +++ R Y++YRE+R  +R+
Sbjct: 53  EAMPEQELVQDTVEQVLMESRLYQVARRYIVYREKRRAIRS 93


>gi|218780155|ref|YP_002431473.1| anaerobic ribonucleoside triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761539|gb|ACL04005.1| anaerobic ribonucleoside-triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 697

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN-K 88
           Q+ KR+G +  FD +KI+ AI +A  A + +   R  R       LT + VT  L H+ +
Sbjct: 4   QIKKRDGRIVPFDAAKITNAIAQAGKATD-EFTEREAR------KLTLRVVT--LAHDMR 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              I  +E++QD VE  L+ S +    + Y+LYRE+ + +R      + D
Sbjct: 55  LGSIPEVEEVQDIVEHVLLDSPYFMSAKAYILYREQHAQIRRITREDRID 104


>gi|261416546|ref|YP_003250229.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373002|gb|ACX75747.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 776

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 14/111 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRS----IRVQDIIKNLTEQTVTR 82
           V KR+G    F+  KI+ A++KAF A     E   AS++    +   D++ N+  +    
Sbjct: 5   VKKRDGREMPFNIEKIADAVIKAFRASGELDEQIKASQAQMNLLGSDDLLTNVALKVAAE 64

Query: 83  LLQH----NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            + H    NK+     IE+IQD VE +L + G+    + Y+LYR ER+ VR
Sbjct: 65  AVGHLEAENKTK--PDIEEIQDAVEKALTEGGYADTAKSYILYRAERTRVR 113


>gi|303233138|ref|ZP_07319811.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
 gi|302480723|gb|EFL43810.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
          Length = 765

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 21/101 (20%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASR------SIRVQDIIKNLTEQTVT 81
           +++IKRNG    FD SKIS AI  A   V EG+  ++      S+ V+D+ K+    TVT
Sbjct: 26  MRIIKRNGSEVEFDISKISNAISAANKEVPEGERLTQREITFASLNVEDLCKS-AGHTVT 84

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                        +E+IQD VE  +M   H  + R+Y++YR
Sbjct: 85  -------------VEEIQDMVEDQIMALNHFSVARKYIIYR 112


>gi|149276406|ref|ZP_01882550.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
 gi|149232926|gb|EDM38301.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
          Length = 706

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 14/100 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   SF+  KI  AI KAF +V       ++  Q    +L  + ++ L++  K A
Sbjct: 7   VIKRNGSFQSFESYKIEDAIRKAFSSV-------NVPHQ---HDLVVRVLSLLIRKEKWA 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               +E+IQD +E +L  +G  ++TR ++ YR  R   RA
Sbjct: 57  ----VEEIQDVIERTLFDAGLFEVTRSFMRYRHTRKMQRA 92


>gi|187777315|ref|ZP_02993788.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
 gi|187774243|gb|EDU38045.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
          Length = 713

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G    FD  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEFDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQRVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKKE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|15211872|emb|CAC51105.1| ribonucleotide reductase large subunit [Bacillus sp. M135]
          Length = 89

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------SEETAV---CNL 602
           E+G+P+I F D  N   P +H+  V  SNLC+E+   S           +E  +   CNL
Sbjct: 1   ESGYPYIMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGLDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|118444516|ref|YP_877160.1| anaerobic ribonucleoside triphosphate reductase [Clostridium novyi
           NT]
 gi|118134972|gb|ABK62016.1| oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium novyi NT]
          Length = 703

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 16/108 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI----RVQDIIKNLTEQTVTRLLQH 86
           V+KR+G    FD   I  AI         KG++  I    +  +II+ LT++ + ++   
Sbjct: 4   VVKRDGRRVPFDSINIKNAI---------KGSADEIAFALKESEIIE-LTQKVIEQIEII 53

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           N     + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH
Sbjct: 54  NCKE--ISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSH 99


>gi|55821930|ref|YP_140372.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55823849|ref|YP_142290.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
 gi|55737915|gb|AAV61557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55739834|gb|AAV63475.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
          Length = 734

 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD SKI  AI+KA   +         ++++I   +  +   R   HN 
Sbjct: 15  IKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEEIANRVVAEINDR-FSHN- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|330809992|ref|YP_004354454.1| ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378100|gb|AEA69450.1| Ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 671

 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G V +FD  KI +A++ A     GK       V+   + L E  + RL    +    
Sbjct: 15  KRDGSVVAFDADKIRQALIAA-----GKATGEYAEVE--AEALLEAVLARLEGQTR---- 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +++E IQD+VE  LM +G     R Y++YRE+   +R
Sbjct: 64  LNVEQIQDRVERVLMDAGFFLSMRAYIVYREQHGRLR 100


>gi|312864356|ref|ZP_07724589.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
 gi|311100077|gb|EFQ58288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
          Length = 735

 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   SFD  KI +A++KA   V        ++++ I   +  +   R +    
Sbjct: 15  ITVIKRDGRHVSFDSDKIYQALIKASQNVSHMSPLMEVKLKGICDRIVAEIANRFMAD-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ  VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQSIVEHELLNANEYAIAQEYINYRTQRDFARS 110


>gi|257792307|ref|YP_003182913.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|257476204|gb|ACV56524.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
          Length = 775

 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF A  G    R+   +DI + + ++  +  ++   + 
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAFQAC-GAMQDRAA-AEDIAQRVVDKLESGAIEGAPT- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S
Sbjct: 62  ----VEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNS 100


>gi|317490230|ref|ZP_07948718.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|316910724|gb|EFV32345.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
          Length = 775

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF A  G    R+   +DI + + ++  +  ++   + 
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAFQAC-GAMQDRAA-AEDIAQRVVDKLESGAIEGAPT- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S
Sbjct: 62  ----VEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNS 100


>gi|325833573|ref|ZP_08166022.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|325485497|gb|EGC87966.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 805

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF A  G    R+   +DI + + ++  +  ++   + 
Sbjct: 35  IMKRDGRTVEFKQEKIAEAVERAFQAC-GAMQDRAA-AEDIAQRVVDKLESGAIEGAPT- 91

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S
Sbjct: 92  ----VEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNS 130


>gi|332702573|ref|ZP_08422661.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552722|gb|EGJ49766.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 685

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 11/102 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KR+G + ++   +I  AI+KA  A           ++D I  L+++   ++ +  +
Sbjct: 3   LQIRKRDGRLETWSTDRIGEAILKALKASG---------IKDPI--LSKRLACKVEKKLE 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              +   E IQD VE  LM++  + + ++YVLYRE+R ++RA
Sbjct: 52  GLDVAEQEQIQDTVELVLMENRLYDVAKKYVLYREKRRELRA 93


>gi|197287263|ref|YP_002153135.1| anaerobic ribonucleoside triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227357040|ref|ZP_03841410.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
 gi|194684750|emb|CAR46763.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227162732|gb|EEI47695.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A  A +           D       Q+V++ L    + 
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRAAEACQ--------ITDDDYCEFVAQSVSQSLAGRSN- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQD VE  LM   H  I R Y+ YR +R   R
Sbjct: 56  --VDIREIQDAVENQLMAGEHKDIARAYIEYRHDRDVAR 92


>gi|317476686|ref|ZP_07935930.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907149|gb|EFV28859.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 736

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  + KG         +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTD-KGED-----MQLIRQITDHISF------KGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|218961544|ref|YP_001741319.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730201|emb|CAO81113.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 710

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG +  F   KI++AI  A +A    G       +DI   LT + V  L Q      I
Sbjct: 9   KRNGSIVPFKQQKIAKAIESAGLATGEFG-------KDIAGVLTLR-VLNLAQQVIQDEI 60

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +E IQD VE  L+ S + K  + Y++YR++ S +R
Sbjct: 61  PEVEKIQDIVEEVLLASPYKKTAKAYIIYRDQHSRIR 97


>gi|15211877|emb|CAC51108.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 89

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAV-----CNL 602
           E+G+P+I F D  N   P +H+  V  SNLC+E+   S         +E  +     CNL
Sbjct: 1   ESGYPYIMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGFDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|302337969|ref|YP_003803175.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635154|gb|ADK80581.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 827

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNKS 89
           +++R+GG+  +D  +I  A+ +A  A  G+G   S+  + +   + E+  +    +H  S
Sbjct: 33  IVRRDGGLVPYDRERILSAVARAIEAT-GRGEEGSL-AEGLTLAVEEKLRSGFAARHPNS 90

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           A  V  E+IQD VE +L+++G   + + Y+LYR     +R A+
Sbjct: 91  APAV--EEIQDIVETTLIEAGEAAVAKAYILYRARHEAIRDAK 131


>gi|169349534|ref|ZP_02866472.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
 gi|169293609|gb|EDS75742.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
          Length = 742

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F+  KI+ AI KAF A   K   ++    DI K      V + L+  +SAL 
Sbjct: 7   KRDGRLVPFELDKIAGAIYKAFQACSSKYELKT--ALDIAK-----KVEKNLEKKQSALP 59

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +E +QD VE  L++ G  ++ + Y+LYR  R+  R  +S
Sbjct: 60  T-VELVQDTVEEVLIEQGFVRVAKAYILYRANRTRERDMRS 99


>gi|325299812|ref|YP_004259729.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
 gi|324319365|gb|ADY37256.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
          Length = 795

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF  SKIS AI KAF A    G  +        + L E+   R++ H    
Sbjct: 8   IIKRDGKQESFSASKISNAIGKAFQAT---GLEKQ-------EQLIEEITRRVIAHFTHP 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            +  +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 58  TL-GVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERERKTQMK 101


>gi|218130192|ref|ZP_03458996.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
 gi|217987696|gb|EEC54024.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
          Length = 736

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  + KG         +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTD-KGED-----MQLIRQITDHISF------KGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|312862463|ref|ZP_07722706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
 gi|311102106|gb|EFQ60306.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
          Length = 734

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G +  FD SKI  AI+KA  A+          +  II+   E   T +L   +
Sbjct: 15  IKVIKRDGRMVVFDSSKIYEAILKASEAI--------TPITPIIETKLEGIATHILAEIN 66

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++ +  + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 67  DRFSHNIKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|303239258|ref|ZP_07325787.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302593303|gb|EFL63022.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 770

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  G     ++ + + + +  E+ + +      
Sbjct: 3   TKIKKRDGREVPFNIEKIANAIFKAASATGGHDYESALSLAEKVVDSIEKEMDKK----- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E+IQD VE  L+ +GH +  + ++LYR +R+ VR
Sbjct: 58  ---VPSVEEIQDSVEKVLIDTGHVRTAKAFILYRADRTRVR 95


>gi|187926824|ref|YP_001893169.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|241665153|ref|YP_002983512.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|187728578|gb|ACD29742.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|240867180|gb|ACS64840.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 683

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G + +FD  KI RA     MA  G+ A+     Q+       Q ++  +    
Sbjct: 4   TQVTKRDGSLAAFDGQKIHRA-----MAAAGQ-ATGEFDTQE------AQRLSLYVVDQV 51

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           SAL    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA
Sbjct: 52  SALDCPGIEAIQNHVEETLVDAGYWRTARAYIVYREQHARLRA 94


>gi|332360461|gb|EGJ38272.1| ATP cone domain protein [Streptococcus sanguinis SK355]
          Length = 112

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   ++   +
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVMDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 54  AKVERATISMIQSMVESRLLGAGYITIAEHYISYRLQR 91


>gi|241761764|ref|ZP_04759850.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283856392|ref|YP_162760.2| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373678|gb|EER63238.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283775391|gb|AAV89649.2| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 672

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA  A    G         + K   +  + R   H    
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKAGAA---SGEFDHAEAARLAKQAQKVILHRFADHAP-- 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q
Sbjct: 67  ---EIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQ 105


>gi|125718012|ref|YP_001035145.1| hypothetical protein SSA_1190 [Streptococcus sanguinis SK36]
 gi|125497929|gb|ABN44595.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
          Length = 112

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   ++   +
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVMDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 54  AKVERATISMIQSMVESRLLGAGYITIAEHYISYRLQR 91


>gi|303236548|ref|ZP_07323131.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
 gi|302483254|gb|EFL46266.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
          Length = 699

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 22/108 (20%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KR+G    F   KI  AI+KAF +V                   E T   ++ 
Sbjct: 1   MKNFTITKRDGSKDRFSLDKIMNAIIKAFDSV------------------NEPTDLAMVS 42

Query: 86  HNKSALIVH----IEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              S + +H    +EDIQ+QVE +LM+ G + + + +++YR++ ++ R
Sbjct: 43  KVLSNIDIHDDIKVEDIQNQVEVALMKEGFYNVAKSFIVYRQQHTEDR 90


>gi|260752524|ref|YP_003225417.1| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258551887|gb|ACV74833.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 672

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA  A    G         + K   +  + R   H    
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKAGAA---SGEFDHAEAARLAKQAQKVILHRFADHAP-- 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q
Sbjct: 67  ---EIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQ 105


>gi|288906369|ref|YP_003431591.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           gallolyticus UCN34]
 gi|325979382|ref|YP_004289098.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733095|emb|CBI14676.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus gallolyticus UCN34]
 gi|325179310|emb|CBZ49354.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 738

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   + 
Sbjct: 14  AVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN- 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  -----VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARS 110


>gi|171778524|ref|ZP_02919651.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282747|gb|EDT48171.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 741

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   + 
Sbjct: 14  AVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN- 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  -----VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARS 110


>gi|306832414|ref|ZP_07465567.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425454|gb|EFM28573.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 738

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   + 
Sbjct: 14  AVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN- 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  -----VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARS 110


>gi|325694491|gb|EGD36400.1| ATP cone domain protein [Streptococcus sanguinis SK150]
          Length = 112

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T    L   +
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVALDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 54  AKVERATISMIQSMVESRLLGAGYITIAEHYISYRLQR 91


>gi|15211870|emb|CAC51104.1| ribonucleotide reductase large subunit [Bacillus sp. M1321]
          Length = 89

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------SEETAV---CNL 602
           E+G+P++ F D  N   P +H+  V  SNLC+E+   S           +E  +   CNL
Sbjct: 1   ESGYPYVMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGLDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|317154199|ref|YP_004122247.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944450|gb|ADU63501.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA        A+  I+   + K L  +   +L      
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKAL-------AASGIKDPLLAKRLARKVEKKL----DG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I   E +Q+ VE  LM+S  + I ++Y+LYRE+R  +R+ ++
Sbjct: 53  MEIPEQEHVQNTVEQILMESRQYDIAKKYILYREKRRQLRSQKA 96


>gi|28210021|ref|NP_780965.1| anaerobic ribonucleoside triphosphate reductase [Clostridium tetani
           E88]
 gi|28202456|gb|AAO34902.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium tetani
           E88]
          Length = 704

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SF+  KI+ AI +A   +        ++  + + NLT+  +  L +  K  
Sbjct: 4   VVKRDGRRASFNSIKIANAIKRASEEI-----GFELKESEFM-NLTQNVIKVLEKSVKDE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E+IQ+ VE +LM++ +  I R Y  YR+ER+ +R  +S
Sbjct: 58  ITV--EEIQNLVERTLMENNYKNIGRAYANYRQERTRIREIKS 98


>gi|160881178|ref|YP_001560146.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160429844|gb|ABX43407.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 708

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G VT +D +KI  AI KA   V+ K      +++ II  +         +H K
Sbjct: 1   MKVVKRDGRVTDYDRNKILVAIRKANDEVDPKEKITEDKIEAIILGI---------EHLK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              + ++E+IQD +E  LM      + + Y++YR  R  VR A +  +S
Sbjct: 52  KDTM-YVEEIQDMIEQKLMAERKFVLAKTYIIYRFRRELVRKANTTDES 99


>gi|319901859|ref|YP_004161587.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
 gi|319416890|gb|ADV44001.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
          Length = 735

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  + KG       +D+   L  Q    +     S 
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTD-KG-------EDL--QLIHQITDHISFKGNSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 55  MTV--EAIQDMVEVELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|308271161|emb|CBX27770.1| hypothetical protein N47_C18280 [uncultured Desulfobacterium sp.]
          Length = 758

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           EKIK     KR+  +  FD SKI+ A+ KA  A + +   R  R       LT + +T L
Sbjct: 29  EKIK-----KRDNRIVEFDSSKITAALTKAGRATD-EFDERDAR------KLTLRVLT-L 75

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +   I  +E IQD VE  L+ S  +K  + Y++YRE+ + +R+  +++  D
Sbjct: 76  AHEIRLGPIPDVEGIQDIVERVLLDSSFYKTAKAYIIYREQHAQIRSIATNANID 130


>gi|328912187|gb|AEB63783.1| Ribonucleoside-diphosphate reductase nrdEB subunit alpha [Bacillus
           amyloliquefaciens LL3]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A+E  + +    +  +TPT  N+G  R  ++ SCFL  V D L  I   +  +  L+K 
Sbjct: 135 KAIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVGDSLNDISRTIDISMQLSKL 194

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            GG+  +   +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 195 GGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 240


>gi|294790367|ref|ZP_06755525.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
 gi|294458264|gb|EFG26617.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
          Length = 798

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  V+V KR+G V  FD   I  AI  AF AV+ +     +R   +I+ +T++  + +  
Sbjct: 17  IDSVKVEKRDGRVVPFDSVNIIHAIEAAFKAVDEEVGPEEVR---LIEQMTQRVASSITG 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I+DIQ  VE  L+    + I + Y  YR ++ D++ A++   SD   A K 
Sbjct: 74  RYNGP--VRIDDIQSLVEHELVNEHLYDIAKAYTSYRLDK-DIKRAKA---SDVNEAIK- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D +L+  N+ +
Sbjct: 127 KLVNKDESLVRENANK 142


>gi|213622029|ref|ZP_03374812.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 225

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 286 KYERDFAFE--------------YLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLA 329
           +Y+R F F               +LG    Y  Y L   +G R +E  +     VA+ LA
Sbjct: 70  RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLA 129

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQ 388
             +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+ 
Sbjct: 130 QGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVN 186

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
               L+K  GG+    + +R  GA I     +S GVIP
Sbjct: 187 SALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIP 224


>gi|291529710|emb|CBK95296.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV---EGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +++IKR+G    FD +KI+ A+ KA  +V   E       I++ + I+N         +Q
Sbjct: 1   MKIIKRSGMEVDFDVTKIAAAVRKANNSVVDYEKISEDEIIKLSETIENACSN-----MQ 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           H  +     +EDIQD VE  LM      + R Y+ YR  R  VR + +
Sbjct: 56  HTPT-----VEDIQDMVENQLMSMKKFTLARNYITYRYRRELVRKSNT 98


>gi|237807193|ref|YP_002891633.1| anaerobic ribonucleoside triphosphate reductase [Tolumonas auensis
           DSM 9187]
 gi|237499454|gb|ACQ92047.1| anaerobic ribonucleoside-triphosphate reductase [Tolumonas auensis
           DSM 9187]
          Length = 707

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD S+I +A+ KA  AV       ++R      ++  Q  + L   ++  
Sbjct: 7   VIKRDGCRVSFDGSRIWQAVAKAAEAV-------NVRDDAYCASVAGQIASLLAGRDE-- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I ++Q  VE  LM+  H K+ R Y+ YR +R   R  Q 
Sbjct: 58  --VDISEVQTLVENLLMEGPHKKLARAYIEYRHDRDLAREKQG 98


>gi|152979072|ref|YP_001344701.1| anaerobic ribonucleoside triphosphate reductase [Actinobacillus
           succinogenes 130Z]
 gi|150840795|gb|ABR74766.1| anaerobic ribonucleoside-triphosphate reductase [Actinobacillus
           succinogenes 130Z]
          Length = 708

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  +SF+  +I  AI KA  AV+       I+ +     + +Q    + +H ++ 
Sbjct: 6   VIKRDGSRSSFEIQRIINAIKKAAKAVD-------IQDERYYHQIGQQACDEIFEHYQNE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S
Sbjct: 59  --IDISHIQRIVENKLMASSYPQVARAYIEYRHDRDSAREKRS 99


>gi|291458234|ref|ZP_06597624.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418767|gb|EFE92486.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 731

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA   V         +++        + V R +  +K A
Sbjct: 11  VIKRNGQEVKFDIQKIVNAIQKANHEVALVYQMNEYQIRG-----AAEKVARQIGSSKHA 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V++EDIQD VE ++M+   +++ ++YV YR +R   R + +
Sbjct: 66  --VNVEDIQDMVETAIMEMRGYEVAQKYVRYRYKRELARKSNT 106


>gi|227550411|ref|ZP_03980460.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257897185|ref|ZP_05676838.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
 gi|227180312|gb|EEI61284.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257833750|gb|EEV60171.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +      N 
Sbjct: 20  MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRFAEN- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 79  ----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|69246407|ref|ZP_00603929.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257879321|ref|ZP_05658974.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257881863|ref|ZP_05661516.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257890147|ref|ZP_05669800.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257893475|ref|ZP_05673128.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258615727|ref|ZP_05713497.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecium DO]
 gi|260558763|ref|ZP_05830952.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|261207358|ref|ZP_05922045.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289566865|ref|ZP_06447274.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|293550613|ref|ZP_06673281.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|293559577|ref|ZP_06676111.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|293567572|ref|ZP_06678916.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|294616063|ref|ZP_06695880.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|294617660|ref|ZP_06697287.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|294621765|ref|ZP_06700925.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|314937917|ref|ZP_07845233.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|314941408|ref|ZP_07848301.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|314948537|ref|ZP_07851917.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
 gi|314951292|ref|ZP_07854346.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|314992877|ref|ZP_07858278.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|314998081|ref|ZP_07862969.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|68195279|gb|EAN09731.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257813549|gb|EEV42307.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817521|gb|EEV44849.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257826507|gb|EEV53133.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257829854|gb|EEV56461.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260075222|gb|EEW63535.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|260078418|gb|EEW66122.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289161353|gb|EFD09244.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|291589673|gb|EFF21477.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|291591080|gb|EFF22772.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|291596067|gb|EFF27333.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|291598652|gb|EFF29709.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|291603234|gb|EFF33418.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|291606453|gb|EFF35853.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|313587923|gb|EFR66768.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|313592681|gb|EFR71526.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|313596509|gb|EFR75354.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|313599831|gb|EFR78674.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|313642775|gb|EFS07355.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|313645034|gb|EFS09614.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +      N 
Sbjct: 20  MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRFAEN- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 79  ----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|257885069|ref|ZP_05664722.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257820921|gb|EEV48055.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +      N 
Sbjct: 20  MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRFAEN- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 79  ----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|319935134|ref|ZP_08009574.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
 gi|319809959|gb|EFW06342.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
          Length = 726

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFM-AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           +++IKRNG   SFD  KI+ AI KA   AVE +  S      + I N+T        Q  
Sbjct: 1   MKIIKRNGSEVSFDELKITAAIEKANAEAVETERLS-----DEDIDNITNNVK---YQCE 52

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           K    + +E+IQ+ VE  +M+     + R+Y+ YR +R+ VR A +
Sbjct: 53  KMRRALSVEEIQNLVENEIMKLNAFAVARKYITYRYKRALVRKANT 98


>gi|315924356|ref|ZP_07920578.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622235|gb|EFV02194.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 725

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    F+  KI  AI KA   V+      + ++Q +  N+ +Q      QH    
Sbjct: 4   VIKRNGEEVLFNIDKIVNAITKANAEVKPIRQLNAAQIQAVADNVEKQISA--YQHAAG- 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +EDIQD VE  +M+   +++ + Y+ YR++R+ +R + +
Sbjct: 61  ----VEDIQDLVETGIMEMRGYEVAQAYMHYRDKRTALRRSNT 99


>gi|301155917|emb|CBW15387.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           parainfluenzae T3T1]
          Length = 708

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I+ AI KA  AV       +I  +  I +L+++  T +  H +  
Sbjct: 6   VIKRDGSRIGFDLQRITNAIRKAASAV-------NIVDEMYIHDLSQRINTEIFSHYQHE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQ 100


>gi|257888440|ref|ZP_05668093.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257899183|ref|ZP_05678836.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|293572067|ref|ZP_06683078.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
 gi|257824494|gb|EEV51426.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257837095|gb|EEV62169.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|291607852|gb|EFF37163.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +      N 
Sbjct: 20  MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRFAEN- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 79  ----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|325578789|ref|ZP_08148836.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159613|gb|EGC71745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 708

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I+ AI KA  AV       +I  +  I +L+++  T +  H +  
Sbjct: 6   VIKRDGSRIGFDLQRITNAIKKAASAV-------NIVDEIYIHDLSQRINTEIFSHYQHE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQ 100


>gi|116628629|ref|YP_821248.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMD-9]
 gi|116101906|gb|ABJ67052.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMD-9]
          Length = 734

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD SKI  AI+KA   +         +++ I   +  +   R   HN 
Sbjct: 15  IKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAEINDR-FSHN- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|315639678|ref|ZP_07894818.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
 gi|315484639|gb|EFU75095.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRL 83
           ++K ++V+KR+G    FD  KI  A++KA   V G   AS    +  I+  + ++   R 
Sbjct: 17  QLKKMKVVKRDGRFVVFDDQKIYDALLKATQQVNGPLQASDHQVIHQIVTQINQEIAARF 76

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            ++      V I +IQ+ VE +L+Q+  +++   Y+ YR +R
Sbjct: 77  KKN------VKIYEIQNIVEHTLIQNHLYQLAEHYMHYRSQR 112


>gi|293379602|ref|ZP_06625739.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
 gi|292641751|gb|EFF59924.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +      N 
Sbjct: 20  MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRFAEN- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 79  ----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|312279281|gb|ADQ63938.1| Ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus ND03]
          Length = 734

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD SKI  AI+KA   +         +++ I   +  +   R   HN 
Sbjct: 15  IKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAEINDR-FSHN- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ  VE  L+++  + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERS 110


>gi|218132283|ref|ZP_03461087.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992798|gb|EEC58799.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
          Length = 718

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-- 86
           +++IKRNG    FD  KI  AI KA  A              I K LTE+ +  +  +  
Sbjct: 1   MKIIKRNGSEEEFDIDKIIMAIRKANDA-------------GIRKELTEEQIDDIADYIE 47

Query: 87  ---NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               K    + +E+IQD VE  +M  G  +I + YV YR  RS VR + +
Sbjct: 48  YKCEKMNRTLSVEEIQDLVENQIMAKGAFEIAKGYVRYRYTRSLVRKSNT 97


>gi|229828070|ref|ZP_04454139.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
 gi|229792664|gb|EEP28778.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
          Length = 764

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 17/126 (13%)

Query: 10  GDEDAF-PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           G+E+ +  SL     E    V V+KR+G    FD  KI +AI KA    EG  + R    
Sbjct: 11  GEEEMYDESLDGNMDESNHMVYVMKRSGERVPFDLDKIIKAIQKANNE-EGIVSER---- 65

Query: 69  QDIIKNLTEQTVTRLL-----QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                 LTE  +  +          +   + +E+IQD+VE +LM SG HK+ R Y+ YR 
Sbjct: 66  ------LTEGEIAGMAYGIMKDAENTGRDLSVEEIQDKVEDALMGSGKHKVARLYITYRY 119

Query: 124 ERSDVR 129
           + +++R
Sbjct: 120 KHNEMR 125


>gi|255316678|ref|ZP_05358261.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium difficile QCD-76w55]
          Length = 706

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL--DNVIDINC 640
           N C EI L S S     CNL + NL+   +N++ D D L S +R +VR+     +ID   
Sbjct: 396 NPCGEILLKSKS----CCNLTTTNLVNFISNDKLDIDALKSVLRLSVRIALRMTLIDAEL 451

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
              +K  KS+   R IG+ L G     +L ++ Y
Sbjct: 452 KEWDKVMKSD---RVIGVSLTGIMDMFNLTNMTY 482


>gi|167624610|ref|YP_001674904.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354632|gb|ABZ77245.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
          Length = 705

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++    A    G   +   Q I +N+ E +V++L +     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVI---AAANSAGIECAEYAQQIAENVRE-SVSQLAE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V+I D+QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  --VNIHDLQDTVENLLMEGPYKSLARVYIEYRHDRDTNREVSS 95


>gi|224025811|ref|ZP_03644177.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
 gi|224019047|gb|EEF77045.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
          Length = 795

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 16/108 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMA--VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +IKR+G   +F  +KI+ AI KAF+A  +E + A  +   Q +I++  E T+T       
Sbjct: 8   IIKRDGKRENFSAAKITNAIGKAFVATGLEHQEAMINEITQRVIEHFAEPTIT------- 60

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 +E IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 61  ------VEAIQDLVETELMKV-QPEVAKKYIIYRQWRNTERDRKTQIK 101


>gi|167766281|ref|ZP_02438334.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|317496972|ref|ZP_07955302.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712000|gb|EDS22579.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|291559087|emb|CBL37887.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SSC/2]
 gi|316895984|gb|EFV18136.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 729

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKRNG   +FD +KI  AI KA   V         ++  I + + +Q          S
Sbjct: 8   KIIKRNGEEVTFDLNKIINAITKANEEVTKIHQMNQYQIMAIAEKVADQVAN-------S 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  V++EDIQ+ VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 61  SHAVNVEDIQNMVETGIMEMRGYEVAQKYVRYRFKRELRRKSNT 104


>gi|238917493|ref|YP_002931010.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
 gi|238872853|gb|ACR72563.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
          Length = 726

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD SKI  A+ KA M V         +++ I  N+  +++ +  + N+
Sbjct: 1   MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNV--ESICK--EMNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S   + +E+IQD VE  +M      + R+Y+ YR +R+ VR + S
Sbjct: 57  S---LSVEEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNS 98


>gi|206896391|ref|YP_002246379.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739008|gb|ACI18086.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 696

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F+  KI+ AI KA  A       R +  + +IK      V  + Q      I
Sbjct: 7   KRDGRIVPFEAEKITNAIAKAGQAT--GEFDRDVAQKLMIK------VVNVAQTVIKEEI 58

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +E IQD VE  L+ S + K  + Y++YRE+ + +R   S + SD
Sbjct: 59  PSVEQIQDIVEEVLLDSPYRKTAKAYIIYREDHAKMREIVSKANSD 104


>gi|312863781|ref|ZP_07724019.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|322373150|ref|ZP_08047686.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322516549|ref|ZP_08069465.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
 gi|311101317|gb|EFQ59522.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|321278192|gb|EFX55261.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322124937|gb|EFX96357.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
          Length = 112

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V          + D  +    Q   +++   +
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTV--------YVIDDAWRQNLAQVTRKVVLDLQ 52

Query: 89  SALIVH--IEDIQDQVECSLMQSGHHKITREYVLYREER 125
            A +    I  IQ  VE  LM++G   I   Y+ YR +R
Sbjct: 53  DAQVERPTINMIQSLVENRLMEAGFINIAEHYISYRLQR 91


>gi|213621683|ref|ZP_03374466.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 120

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DS 725
           + Y SPEA++  +     I++HA+  S+ LA+ERG  ++ F  S +  G +       D 
Sbjct: 1   MAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDW 60

Query: 726 IGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI
Sbjct: 61  QPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSI 120


>gi|301061755|ref|ZP_07202495.1| ATP cone domain protein [delta proteobacterium NaphS2]
 gi|300444143|gb|EFK08168.1| ATP cone domain protein [delta proteobacterium NaphS2]
          Length = 302

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 17/117 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           EKIK     KR+G +  F+ SKI  AI KA  A    G   +       K+LT + + + 
Sbjct: 3   EKIK-----KRDGEIVPFNDSKIRAAIFKAGKATGEFGGQAA-------KSLTRRVLKKA 50

Query: 84  LQHNKSAL--IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              +KS +  I  +E+IQD VE  L ++  +K  + YV+YR + + +R   + S  D
Sbjct: 51  ---HKSGIGPIPEVEEIQDIVERVLFEADFYKTAKAYVIYRHQHARIRDILNKSNFD 104


>gi|330861131|emb|CBX71394.1| hypothetical protein YEW_EY21260 [Yersinia enterocolitica W22703]
          Length = 171

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L++ V   G+ N N  A+ PT +I+ I   + SI P                     
Sbjct: 23  WAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP--------------------- 61

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +V+ ++ R    E  I  + Y    + N     D+L+  +  A++I P  +I++ +   +
Sbjct: 62  IVSPIEIRK---EGKIGRVYYPAPYMTN-----DNLE-YYQDAYQIGPEKIIDTYAEATQ 112

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   ++E + ++G
Sbjct: 113 HVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQ-MALEGTEVEG 165


>gi|329961239|ref|ZP_08299419.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
 gi|328532002|gb|EGF58816.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  + KG         +I+ +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTD-KGED-----MQLIRQITDHISF------KGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  SQMTVEAIQDLVELELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|188026380|ref|ZP_02961883.2| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
 gi|188020182|gb|EDU58222.1| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
          Length = 732

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I  AI         K AS ++ +QD   +   Q  T + +   + 
Sbjct: 25  VIKRDGCQVNFDFQRIQEAI---------KRASAAVNIQD--DDYCLQVATTVTEQLGNR 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 74  EKVDIREIQDAVENQLMSGPYKDLARAYIEYRHDRDSAREKRSQLTHD 121


>gi|88799250|ref|ZP_01114829.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
 gi|88778009|gb|EAR09205.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
          Length = 709

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 11/104 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F   +I++AI+ A +A     A            L +Q  + + Q  K  
Sbjct: 5   VTKRDGHVVPFYRPRITQAILNAMIAKNQVDAP-----------LADQLSSNVEQFFKDQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             V IE +Q QVE  L+Q+    + R Y+ YR++R   R  +S 
Sbjct: 54  TRVDIEQVQQQVEAELIQAALVPVARAYIRYRQQRDLARDRRSQ 97


>gi|323487570|ref|ZP_08092861.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
 gi|323399108|gb|EGA91515.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
          Length = 725

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I   + E   TR    N 
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQVEEVCSTRPHAMN- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 +E+IQD VE  +M+    ++ R+Y+ YR  R+  R++ +
Sbjct: 60  ------VEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKRSSNT 98


>gi|304570577|ref|YP_386773.2| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 683

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++ P +I+ AI+KA            ++   I   L  + + R ++    
Sbjct: 4   QIQKRDGCLETWSPDRIALAILKA------------LKASGIKDPLLSRRLARKVEQRLE 51

Query: 90  ALIVHI-EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            + V   E +QD +E  LM+S  + + R +++YRE R  +R  Q+
Sbjct: 52  GIDVPCQEQVQDTIEMILMESRLYHVARRFIIYRENRRQLREQQA 96


>gi|329115737|ref|ZP_08244454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
 gi|326906142|gb|EGE53056.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
          Length = 729

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G + +FD +KI  A++KA + V         +++ I + +  +   R   +  
Sbjct: 12  IRVIKRDGRLVNFDTTKIYSALLKASVEVTKMSPVLEAKLEAISERVIAEIRDRFPNN-- 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+
Sbjct: 70  ----IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARS 107


>gi|323692294|ref|ZP_08106533.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503619|gb|EGB19442.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 725

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I   + E   TR    N 
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQVEEVCSTRPHAMN- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 +E+IQD VE  +M+    ++ R+Y+ YR  R+  R++ +
Sbjct: 60  ------VEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKRSSNT 98


>gi|310780509|ref|YP_003968841.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309749832|gb|ADO84493.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 783

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  KI  AI KA +A  GK         DI K  +    +++L  +   
Sbjct: 3   VIKRDGTKVPFNKEKIINAIEKAGIAA-GK---------DIPKEFSVTAASKILNLSSD- 51

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +E IQD VE  LMQ  + ++ ++Y+LYR+ R+  R  ++H K
Sbjct: 52  --TEVESIQDMVEKELMQE-YPEVAKKYILYRDMRNVERHKRTHIK 94


>gi|298252649|ref|ZP_06976443.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
 gi|297533013|gb|EFH71897.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
          Length = 805

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL- 84
           +  VQV KR+G V  FDP  I  AI  AF  +   G     + + +I+N+++     +  
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDL---GKEVGPQEEQLIRNISDHIEAEIQD 80

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++N  A    IEDIQ  VE SL+++  +++ R Y  YR  R   RA
Sbjct: 81  RYNGPA---KIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRA 123


>gi|300853392|ref|YP_003778376.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433507|gb|ADK13274.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 701

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 22/112 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-------DIIKNLTEQTVT 81
           + V+KR+G    FD  KI+ AI         KG+   I          D+ + +TE    
Sbjct: 2   LHVVKRDGRRVPFDSIKITNAI---------KGSCDEIGFDLKESEFIDLTQKVTENIEN 52

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             L+       V++EDIQ+ VE  LM+ G+ KI   Y  YR ER+D+R  +S
Sbjct: 53  LNLKE------VNVEDIQNIVEEVLMKKGYVKIGLAYSNYRRERNDIREIKS 98


>gi|150009988|ref|YP_001304731.1| anaerobic ribonucleoside triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938412|gb|ABR45109.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|256838798|ref|ZP_05544308.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
 gi|256739717|gb|EEU53041.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|298374346|ref|ZP_06984304.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
 gi|298268714|gb|EFI10369.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|262382704|ref|ZP_06075841.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
 gi|262295582|gb|EEY83513.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|329955958|ref|ZP_08296761.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
 gi|328525338|gb|EGF52388.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  AI KA +  + KG         +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIVTAIRKAMLHTD-KGED-----MQLIRQITDHISF------KGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|301308020|ref|ZP_07213974.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
 gi|300833490|gb|EFK64106.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|255012747|ref|ZP_05284873.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           2_1_7]
          Length = 735

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G +  F+  KI  AI KA +  +     + IR + D I    E  +T        
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQLIRQITDHISFKGEPQMT-------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +E IQD VE  LM S    + ++Y+ YR +RS  R A++
Sbjct: 57  -----VEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKT 95


>gi|38639964|ref|NP_943919.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414653|gb|AAQ17696.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
          Length = 704

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQH 86
           +QV KR+G V  FD S I  AI  +          +SI + D     + TE  V +L+  
Sbjct: 1   MQVQKRDGRVVDFDQSFIETAITNSL---------QSINIIDPTFPHHATEAVVRKLIGR 51

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           N    +V IE+IQ  VE +LM+S +  + R Y+ YR +R   R   S
Sbjct: 52  N----LVTIEEIQHVVEDTLMKSRYPAVARSYIEYRYDRDVARDLNS 94


>gi|188996398|ref|YP_001930649.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931465|gb|ACD66095.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 703

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 14/95 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  AI KAF +V       +    +II N     +T L Q +   
Sbjct: 3   IIKRDGLAQEFMPYKIKDAIEKAFKSV-------NQTFDEIIYN---NVLTTLKQKD--- 49

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            +  +E+IQD +E  L ++G+ ++ R ++LYR  R
Sbjct: 50  -VWTVEEIQDLIEKELFRAGYFEVMRSFMLYRHTR 83


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL--QHN 87
           ++IKR+     F   KI+ AI  A MA  G G+ +  ++      ++ Q    LL  +  
Sbjct: 8   KIIKRDYSTAPFVLEKITNAIANA-MAALGHGSEQDAKL------ISMQVYESLLNNKEQ 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           +S  I  +E +QD VE  LM S  H + + Y++YR +R+
Sbjct: 61  ESEYIPTVEQVQDMVEDKLMSSEFHDVAKAYIIYRNKRA 99


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+     F   KI+ AI+KA  A+E  G   + R+ D++ +  ++      +   +
Sbjct: 5   HIVKRDFQTKPFHQEKITSAILKAMTAIEHGGPEDAQRISDMVYSDLKKR-----KELDA 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHH-KITREYVLYREERSDVR 129
           + I  IE IQD VE  LM S     + + Y+LYR+E++  R
Sbjct: 60  SYIPTIEQIQDLVERKLMLSEEFVDVAKTYILYRDEQAQKR 100


>gi|111184257|gb|ABH08177.1| HSPV074a [Horsepox virus]
          Length = 80

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 2   AADRGAFIDQSQSMNIHIADPSYFKLTSMHFYGWSLGLKTEMYYLRTKPASAPIQFTL 59


>gi|196248887|ref|ZP_03147587.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           sp. G11MC16]
 gi|196211763|gb|EDY06522.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           sp. G11MC16]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 323 RVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FY  LSS +F+ +   L+ +G+ +     +C++   V 
Sbjct: 136 RNATGLAAVEKTEEKRNEWFQKFYEELSSMNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKR 444
           V QGG R
Sbjct: 256 VEQGGSR 262


>gi|269967747|ref|ZP_06181795.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
 gi|269827653|gb|EEZ81939.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
          Length = 706

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L +H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLREHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|228477618|ref|ZP_04062251.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250762|gb|EEK09960.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 112

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA        A     + D  +    Q   +++   +
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKA--------AQTVYVLDDTWRQNLAQVTKKVVLDLQ 52

Query: 89  SALIVH--IEDIQDQVECSLMQSGHHKITREYVLYREER 125
            A +    I  IQ  VE  LM++G   I   Y+ YR +R
Sbjct: 53  DAQVERPTINMIQSLVENRLMEAGFINIAEHYISYRLQR 91


>gi|283783570|ref|YP_003374324.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
 gi|283441058|gb|ADB13524.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL- 84
           +  VQV KR+G V  FDP  I  AI  AF  +   G     + + +I+N+++     +  
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDL---GKEIGPQEEQLIRNISDHIEAEIQD 80

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++N  A    IEDIQ  VE SL+++  +++ R Y  YR  R   RA
Sbjct: 81  RYNGPA---KIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRA 123


>gi|237736598|ref|ZP_04567079.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420460|gb|EEO35507.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 729

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G +  FD  +I RA+  AF    G           +   L E+  T++   N  
Sbjct: 3   EVIKRDGAIVEFDRDRIVRAMTMAFKQSSGT----------VNNELVEKITTQI--ENMD 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +H+EDIQD V   LM S    I   Y  YR  ++++R
Sbjct: 51  NKRMHVEDIQDIVVKKLMASSEKDIAIAYQSYRAIKTEIR 90


>gi|260173949|ref|ZP_05760361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922217|ref|ZP_07918457.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
 gi|313696092|gb|EFS32927.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
          Length = 797

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +   +   V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGFQDEQQ--LVADITMNVISQFTTP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|310722633|ref|YP_003969456.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
 gi|306021476|gb|ADM80010.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
          Length = 703

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQH 86
           +QV KR+G V +FD S I  AI  +          +SI + D     + TE  V +L+  
Sbjct: 1   MQVQKRDGRVVNFDQSFIETAISNSL---------KSINITDPTFPHHATEAVVRKLIGR 51

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           N     V IE+IQ  VE +LM+S +  + R Y+ YR +R   R   S
Sbjct: 52  N----TVTIEEIQRVVEDTLMRSRYPAVARAYIEYRYDRDVARDMNS 94


>gi|329926784|ref|ZP_08281192.1| ATP cone domain protein [Paenibacillus sp. HGF5]
 gi|328938984|gb|EGG35352.1| ATP cone domain protein [Paenibacillus sp. HGF5]
          Length = 154

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 22/103 (21%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR---SIRVQDIIKNLT---EQTVTR 82
           ++V+KR+G +  F+ S+I  A+ KAFMAVE  G SR   S+R+ D + + T   EQ    
Sbjct: 1   MKVMKRDGCLVKFETSRIVEAVDKAFMAVE--GVSRKDASLRIGDEVAHATAGMEQ---- 54

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     V +E+IQD V   L  +G+ ++   Y  YRE R
Sbjct: 55  ----------VSVEEIQDIVVEHLQSTGYPEVAAAYQHYREAR 87


>gi|238924749|ref|YP_002938265.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
 gi|238876424|gb|ACR76131.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
          Length = 746

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N+  +T    ++ + 
Sbjct: 12  MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASNV--ETACENMKRSP 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S
Sbjct: 70  S-----VEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNS 109


>gi|153956348|ref|YP_001397113.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           kluyveri DSM 555]
 gi|219856663|ref|YP_002473785.1| hypothetical protein CKR_3320 [Clostridium kluyveri NBRC 12016]
 gi|146349206|gb|EDK35742.1| NrdD [Clostridium kluyveri DSM 555]
 gi|219570387|dbj|BAH08371.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 701

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI+ AI  A   +        ++  D I +LT++ +  + + N 
Sbjct: 2   LHVVKRDGRKVEFNSIKITNAIKSASEEI-----GYELKESDFI-DLTQKVIKEIEELNV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E+IQ+ VE  L+++GH KI   Y  YR ER+ +R  +S
Sbjct: 56  KE--IEVEEIQNIVEKILLKNGHRKIGLVYSNYRSERTKIRDIKS 98


>gi|307704585|ref|ZP_07641490.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307621882|gb|EFO00914.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 112

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|291526100|emb|CBK91687.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale DSM 17629]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N+  +T    ++ + 
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASNV--ETACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S
Sbjct: 59  S-----VEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNS 98


>gi|291527165|emb|CBK92751.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N+  +T    ++ + 
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASNV--ETACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S
Sbjct: 59  S-----VEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNS 98


>gi|226324292|ref|ZP_03799810.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
 gi|225206740|gb|EEG89094.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
          Length = 729

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    F   KI  AI KA   VE        ++  I + + +Q         + 
Sbjct: 8   RVIKRNGEEVDFRLEKIVNAIKKANEEVENIHRMNDFQIIAIAEKIAQQA-------EEF 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              V++EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 61  THAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNT 104


>gi|24379431|ref|NP_721386.1| putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|290580558|ref|YP_003484950.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
 gi|24377364|gb|AAN58692.1|AE014938_8 putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|254997457|dbj|BAH88058.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
          Length = 122

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 16/102 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRL 83
           +QVIKR+G V  FDP KI +AI+         GA++++ V D      +  +T++ V  L
Sbjct: 11  MQVIKRSGQVVDFDPDKIYQAIL---------GAAQTVYVLDDALRQDLAQVTKKVVVDL 61

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            +       + +  IQ QVE  L+ +G+  I   Y+ YR +R
Sbjct: 62  EEAQTERPTISM--IQSQVEHRLLDAGYITIAEHYISYRLQR 101


>gi|291522895|emb|CBK81188.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 708

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +++ SKI  AI KA   V  +    +  +++I+  +  +   R+L      
Sbjct: 3   VIKRDGQEVNYNRSKIIVAIGKANEEVPEEERISNQEIEEIVSYVETRKRKRIL------ 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               +EDIQD +E  LM  G   + + Y++YR  R  VR A +   S
Sbjct: 57  ----VEDIQDIIEQKLMALGKFDLAKRYIVYRYTRELVRRANTTDDS 99


>gi|225018290|ref|ZP_03707482.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
 gi|224948927|gb|EEG30136.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
          Length = 775

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 10/102 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
            ++IKR+G   +F+  K+++AI +A  +V     SR+  +  ++   + EQ         
Sbjct: 3   TKIIKRDGREAAFNIDKVTQAIFRAGQSVGDLDYSRANEIAGNVYARINEQM-------- 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +  +E +QD VE  L+  G  +I + Y+LYR ER+ VR
Sbjct: 55  -EDSVPTVEQVQDFVEKELIAEGLSEIAKHYILYRAERTRVR 95


>gi|15893771|ref|NP_347120.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023339|gb|AAK78460.1|AE007562_7 Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium acetobutylicum ATCC 824]
 gi|325507894|gb|ADZ19530.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 702

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD +KI  AI  A   +        I+  DI++ LT++ + R+   + 
Sbjct: 2   LNVVKRDGRQVVFDSNKIFNAIKGAADEI-----GYDIKQSDILE-LTQKVIGRV--EDL 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E++Q+ VE  L+++G+ +I   Y  YR+ER+ VR  +S
Sbjct: 54  KIREISVEEVQNLVEEVLLENGNKEIGMAYCTYRKERTKVREIKS 98


>gi|51243916|ref|YP_063800.1| anaerobic ribonucleoside triphosphate reductase [Desulfotalea
           psychrophila LSv54]
 gi|50874953|emb|CAG34793.1| related to anaerobic ribonucleoside-triphosphate reductase
           [Desulfotalea psychrophila LSv54]
          Length = 705

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G +  F+ +KI+ A+ KA +A E          QD  + LT + +T  L +    
Sbjct: 16  VKKRTGNIVPFESAKITAALEKAGLATEE-------FAQDEARRLTIRVLT--LAYEVLP 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +E +QD VE  L+ S H K  + Y+LYR+++   R
Sbjct: 67  ETPEVEQLQDLVEEVLLASPHRKTAKSYILYRDQQKRRR 105


>gi|330448570|ref|ZP_08312218.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492761|dbj|GAA06715.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   ++ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAKSINDMEMSEVYAMSVAEAALAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 56  EEVEIHAIQDAVENQLMVGPHQAVARAYIEYRHDRDIAREKKS 98


>gi|167762161|ref|ZP_02434288.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
 gi|167699804|gb|EDS16383.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
          Length = 736

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  + KG         +I+ +T+          K  
Sbjct: 5   VLKRDGRIVGFNEEKIVTAIRKAMLHTD-KGED-----MQLIRQITDHISF------KGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKT 95


>gi|76786720|ref|YP_330615.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77406616|ref|ZP_00783662.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
 gi|77411839|ref|ZP_00788173.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|76561777|gb|ABA44361.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77162116|gb|EAO73093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|77174775|gb|EAO77598.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G + SFD  KI  A++KA        +++ I++  +++   E     ++   +
Sbjct: 6   IKVIKRDGRLVSFDKYKIYTALLKA--------SNKVIKMSPLVEAKLEMIADHVIAEIY 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           N+    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 58  NRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERS 101


>gi|22538221|ref|NP_689072.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77412973|ref|ZP_00789176.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
 gi|22535133|gb|AAN00945.1|AE014286_8 anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77160985|gb|EAO72093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
          Length = 723

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G + SFD  KI  A++KA        +++ I++  +++   E     ++   +
Sbjct: 6   IKVIKRDGRLVSFDKYKIYTALLKA--------SNKVIKMSPLVEAKLEMIADHVIAEIY 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           N+    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 58  NRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERS 101


>gi|319746024|gb|EFV98305.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus agalactiae ATCC 13813]
          Length = 732

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G + SFD  KI  A++KA        +++ I++  +++   E     ++   +
Sbjct: 15  IKVIKRDGRLVSFDKYKIYTALLKA--------SNKVIKMSPLVEAKLEMIADHVIAEIY 66

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           N+    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 67  NRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERS 110


>gi|299148081|ref|ZP_07041144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298514264|gb|EFI38150.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 797

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSAT-GIQDEQQL-VADITMNVISQFTTP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|25012079|ref|NP_736474.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae NEM316]
 gi|24413623|emb|CAD47700.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 732

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 10/104 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--H 86
           ++VIKR+G + SFD  KI  A++KA        +++ I++  +++   E     ++   +
Sbjct: 15  IKVIKRDGRLVSFDKYKIYTALLKA--------SNKVIKMSPLVEAKLEMIADHVIAEIY 66

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           N+    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+
Sbjct: 67  NRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERS 110


>gi|167758690|ref|ZP_02430817.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
 gi|167663886|gb|EDS08016.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
          Length = 729

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI KA   V+        ++  I  N+  +         +  
Sbjct: 9   VIKRSGEEVSFDLEKIINAIRKANKEVDRLHQMNEYQINAIADNIAHRV-------EEIP 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V++EDIQD VE  +M+   +++ ++YV YR +R   R + +
Sbjct: 62  HAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNT 104


>gi|119026234|ref|YP_910079.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765818|dbj|BAF39997.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 801

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           PE +K V V KR+G V  FDP  I  A+  AF  ++ K   +  R+   I N  E  +  
Sbjct: 17  PEMVK-VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEERLIRDIANQVEAEIKD 75

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             ++N  A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 76  --RYNGPA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 118


>gi|160883453|ref|ZP_02064456.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|237720231|ref|ZP_04550712.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|293371155|ref|ZP_06617692.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|156111173|gb|EDO12918.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|229450783|gb|EEO56574.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|292633813|gb|EFF52365.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 797

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSAT-GIQDEQQL-VADITMNVISQFTTP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|268678694|ref|YP_003303125.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616725|gb|ACZ11090.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 701

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G    F P KI  AI KAF + EG     SI              T +L+  +
Sbjct: 3   TKVLKRDGTTEEFQPYKIEDAIKKAFKS-EGVMYDESI-------------YTEILKRIE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              +  +ED QD +E  L ++ +  + R ++LYR
Sbjct: 49  KKRVAAVEDFQDMIEQELYKARYFDVMRSFILYR 82


>gi|154489082|ref|ZP_02029931.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
 gi|154083219|gb|EDN82264.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
          Length = 801

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           PE +K V V KR+G V  FDP  I  A+  AF  ++ K   +  R+   I N  E  +  
Sbjct: 17  PEMVK-VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEERLIRDIANQVEAEIKD 75

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             ++N  A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 76  --RYNGPA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 118


>gi|153853583|ref|ZP_01994963.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
 gi|149753738|gb|EDM63669.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
          Length = 729

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +FD  KI  AI  A   V+        ++  +  N+ ++         +S 
Sbjct: 9   VIKRNGEEVAFDLEKIINAIKGANKDVDKLHRMNEYQIMAVADNVAKKI-------EEST 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V++EDIQD VE  +M+   +++ ++YV YR +R  +R   +
Sbjct: 62  HAVNVEDIQDMVETGIMELRGYEVAQKYVRYRYKRELMRKTNT 104


>gi|21910387|ref|NP_664655.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
 gi|21904584|gb|AAM79458.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
          Length = 112

 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 20/104 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLLQH 86
           +Q+IKR+G V  FDP KI +AI+K         A+R++ V D    +NLT  T   ++  
Sbjct: 1   MQIIKRDGHVADFDPDKIYQAIIK---------AARTVYVIDDTWRQNLTHVTKKVVIDL 51

Query: 87  NKSALIVHIED-----IQDQVECSLMQSGHHKITREYVLYREER 125
            ++    H+E      +Q  VE  LM +G+  I   Y+ YR +R
Sbjct: 52  EEA----HVERPTINMVQSLVENRLMDAGYITIAEHYISYRLQR 91


>gi|315143853|gb|EFT87869.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2141]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFQRS 113


>gi|307271805|ref|ZP_07553076.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
 gi|306511683|gb|EFM80682.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|55821294|ref|YP_139736.1| hypothetical protein stu1289 [Streptococcus thermophilus LMG 18311]
 gi|55823206|ref|YP_141647.1| hypothetical protein str1289 [Streptococcus thermophilus CNRZ1066]
 gi|55737279|gb|AAV60921.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739191|gb|AAV62832.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 112

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA        A     + D  +    Q   ++    K
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKA--------AQTVYVLDDSWRQNLAQVTKKVALDLK 52

Query: 89  SALIVH--IEDIQDQVECSLMQSGHHKITREYVLYREER 125
            A +    I  IQ  VE  LM++G   I   Y+ YR +R
Sbjct: 53  DAQVERPTINMIQSLVENRLMEAGFINIAEHYISYRLQR 91


>gi|329577341|gb|EGG58799.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1467]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|256961001|ref|ZP_05565172.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
 gi|256951497|gb|EEU68129.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|229818102|ref|ZP_04448384.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
 gi|229784706|gb|EEP20820.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
          Length = 796

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 10/132 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FDP  I  A+  AF  ++ +        + +I++L  Q    + +  + 
Sbjct: 19  QVEKRDGRIVDFDPINIIAAVKSAFADLDKEVGPEE---EALIRDLANQVEGEIKE--RY 73

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           A    IEDIQ+ VE +L++   + + R Y  YR ++ D++ A++   ++A      + + 
Sbjct: 74  AGPAKIEDIQNLVEHALIEDHLYDVARTYTNYRLDK-DIQRAKATDVNEA----VARFIN 128

Query: 150 DDGTLISFNSKR 161
           +D TLI  N+ +
Sbjct: 129 NDPTLIHENANK 140


>gi|225376983|ref|ZP_03754204.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
 gi|225211160|gb|EEG93514.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
          Length = 720

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI KA  +V         ++Q+I+ N     V +  ++ K
Sbjct: 1   MKIIKRSGMEDNFDIKKIEAAIRKANESVIDYEKLTEEKIQEILAN-----VEKACENMK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +    +E+IQD VE  +M      + R Y+ YR +R+ VR + S
Sbjct: 56  RS--PSVEEIQDMVENQIMNQRAFNVARNYITYRYKRALVRKSNS 98


>gi|237714067|ref|ZP_04544548.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262407118|ref|ZP_06083667.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|294644010|ref|ZP_06721790.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298479624|ref|ZP_06997824.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
 gi|229445891|gb|EEO51682.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262355821|gb|EEZ04912.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|292640647|gb|EFF58885.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298274014|gb|EFI15575.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
          Length = 797

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSA-SGIQDEQQL-VADITMNVISQFATP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|268323800|emb|CBH37388.1| putative anaerobic ribonucleoside-triphosphate reductase
           [uncultured archaeon]
          Length = 748

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F+  KI+ AI KA       GA       +I + LT + V  L Q      +
Sbjct: 7   KRDGRLVFFETEKITTAIAKA-------GAVTGEFDYEIAQKLTLK-VLNLAQQAIPRDV 58

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +E++QD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 59  PTVEELQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSRANVD 104


>gi|312906437|ref|ZP_07765445.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
 gi|310627591|gb|EFQ10874.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|257087719|ref|ZP_05582080.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257416922|ref|ZP_05593916.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257421637|ref|ZP_05598627.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
 gi|256995749|gb|EEU83051.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257158750|gb|EEU88710.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257163461|gb|EEU93421.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|256616745|ref|ZP_05473591.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256596272|gb|EEU15448.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|302386691|ref|YP_003822513.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197319|gb|ADL04890.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  +D  KI  AI KA   VE    +    +  I+              + 
Sbjct: 2   IKVQKRDGRIVEYDREKIVTAIGKANAEVEASEQAGEEMIDGILD----------FVESH 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +  ++++E IQD +E  L+    + ++++Y++YR +R+ +R A +  +S
Sbjct: 52  AEDVINVETIQDMIESGLVNRNKYTLSKKYIIYRYQRALLRKANTTDES 100


>gi|17549184|ref|NP_522524.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           solanacearum GMI1000]
 gi|17431436|emb|CAD18114.1| putative ribonucleotide reductase oxidoreductase protein [Ralstonia
           solanacearum GMI1000]
          Length = 683

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 11/102 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD  KI +AI     A  G+ A+     Q+  + L+   + +L     
Sbjct: 4   TQVTKRDGSLAPFDGQKIRQAI-----AAAGR-ATNEFDTQEA-QRLSAHVIGQL----A 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA
Sbjct: 53  GLACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRA 94


>gi|293384613|ref|ZP_06630478.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|293386751|ref|ZP_06631322.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|312979405|ref|ZP_07791093.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
 gi|291078071|gb|EFE15435.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|291083754|gb|EFE20717.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|311287776|gb|EFQ66332.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|227519463|ref|ZP_03949512.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229544864|ref|ZP_04433589.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|227073075|gb|EEI11038.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229310032|gb|EEN76019.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|315025480|gb|EFT37412.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2137]
 gi|315032604|gb|EFT44536.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0017]
 gi|315155614|gb|EFT99630.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0043]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|295084957|emb|CBK66480.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 804

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 15  IIKRDGKREDFSISKIKNAISKAFSA-SGIQDEQQL-VADITMNVISQFATP-------- 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 65  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 108


>gi|238760373|ref|ZP_04621514.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
 gi|238701433|gb|EEP94009.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
          Length = 712

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 13/105 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNKS 89
           VIKR+G    FD  +I  A+ +A +AV            D++      TV R++ Q  ++
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAV------------DVVDADYCATVARVVAQTMEN 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              V I DIQ  VE  LM   + ++ R Y+ YR +R   R  + H
Sbjct: 53  QPKVDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGH 97


>gi|319767470|ref|YP_004132971.1| ribonucleotide reductase large subunit [Geobacillus sp. Y412MC52]
 gi|317112336|gb|ADU94828.1| ribonucleotide reductase large subunit [Geobacillus sp. Y412MC52]
          Length = 262

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FY  L+S +F+ +   L+ +G+ +     +C++   V 
Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVK 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKR 444
           V QGG R
Sbjct: 256 VEQGGSR 262


>gi|15675175|ref|NP_269349.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19746144|ref|NP_607280.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28895963|ref|NP_802313.1| hypothetical protein SPs1051 [Streptococcus pyogenes SSI-1]
 gi|50914260|ref|YP_060232.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808671|ref|ZP_00366394.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|71903562|ref|YP_280365.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71910738|ref|YP_282288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94988658|ref|YP_596759.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94990548|ref|YP_598648.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94992481|ref|YP_600580.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94994470|ref|YP_602568.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|139473716|ref|YP_001128432.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209559480|ref|YP_002285952.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|306827309|ref|ZP_07460596.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
 gi|13622339|gb|AAK34070.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19748321|gb|AAL97779.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28811213|dbj|BAC64146.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50903334|gb|AAT87049.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|71802657|gb|AAX72010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71853520|gb|AAZ51543.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94542166|gb|ABF32215.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94544056|gb|ABF34104.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94545989|gb|ABF36036.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94547978|gb|ABF38024.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|134271963|emb|CAM30201.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209540681|gb|ACI61257.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|304430456|gb|EFM33478.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 118

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 20/104 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLLQH 86
           +Q+IKR+G V  FDP KI +AI+K         A+R++ V D    +NLT  T   ++  
Sbjct: 7   MQIIKRDGHVADFDPDKIYQAIIK---------AARTVYVIDDTWRQNLTHVTKKVVIDL 57

Query: 87  NKSALIVHIED-----IQDQVECSLMQSGHHKITREYVLYREER 125
            ++    H+E      +Q  VE  LM +G+  I   Y+ YR +R
Sbjct: 58  EEA----HVERPTINMVQSLVENRLMDAGYITIAEHYISYRLQR 97


>gi|315151788|gb|EFT95804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0012]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|29377228|ref|NP_816382.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227554237|ref|ZP_03984284.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229549131|ref|ZP_04437856.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294779724|ref|ZP_06745112.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300860551|ref|ZP_07106638.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269217|ref|ZP_07550571.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|307276990|ref|ZP_07558100.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|307278683|ref|ZP_07559751.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|307288628|ref|ZP_07568609.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|307290242|ref|ZP_07570158.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|312900113|ref|ZP_07759429.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|312951928|ref|ZP_07770816.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|29344694|gb|AAO82452.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227176637|gb|EEI57609.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229305756|gb|EEN71752.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294453215|gb|EFG21629.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300849590|gb|EFK77340.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498663|gb|EFM68164.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|306500382|gb|EFM69718.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|306504623|gb|EFM73825.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|306506413|gb|EFM75573.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|306514436|gb|EFM82997.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|310630117|gb|EFQ13400.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|311292748|gb|EFQ71304.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|315030426|gb|EFT42358.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4000]
 gi|315035125|gb|EFT47057.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0027]
 gi|315148715|gb|EFT92731.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4244]
 gi|315154283|gb|EFT98299.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0031]
 gi|315159625|gb|EFU03642.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0312]
 gi|315162082|gb|EFU06099.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0645]
 gi|315165321|gb|EFU09338.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1302]
 gi|315168735|gb|EFU12752.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1341]
 gi|315170449|gb|EFU14466.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1342]
 gi|315573791|gb|EFU85982.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309B]
 gi|315580303|gb|EFU92494.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309A]
 gi|327535968|gb|AEA94802.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus faecalis OG1RF]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|323481675|gb|ADX81114.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis 62]
          Length = 726

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 16  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 74

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 75  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 112


>gi|315173494|gb|EFU17511.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1346]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|256963857|ref|ZP_05568028.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256954353|gb|EEU70985.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|257090991|ref|ZP_05585352.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
 gi|256999803|gb|EEU86323.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|255971849|ref|ZP_05422435.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255974846|ref|ZP_05425432.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256763375|ref|ZP_05503955.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256854049|ref|ZP_05559414.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256957980|ref|ZP_05562151.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|257079917|ref|ZP_05574278.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257420141|ref|ZP_05597135.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
 gi|255962867|gb|EET95343.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255967718|gb|EET98340.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256684626|gb|EEU24321.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256710992|gb|EEU26035.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256948476|gb|EEU65108.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|256987947|gb|EEU75249.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257161969|gb|EEU91929.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|256826696|ref|YP_003150655.1| anaerobic ribonucleoside triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
 gi|256582839|gb|ACU93973.1| anaerobic ribonucleoside-triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
          Length = 740

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI  AI KA   V  +      ++     N+T  T      H  
Sbjct: 1   MKVIKRNGSEVIFDVTKIVNAIAKANEEVVPENRLSQAQILTAANNVT--TECEACGHAP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +     +E+IQD VE  +M  G  ++ R+Y++YR  ++  RA+ +
Sbjct: 59  A-----VEEIQDMVEDQIMALGCFEVARKYIIYRYLQNQKRASNT 98


>gi|312902577|ref|ZP_07761783.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|310634247|gb|EFQ17530.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|315579613|gb|EFU91804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0630]
          Length = 727

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 17  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 76  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|257084282|ref|ZP_05578643.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
 gi|256992312|gb|EEU79614.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|226947317|ref|YP_002802408.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842007|gb|ACO84673.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 713

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G     D  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEIDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|156932481|ref|YP_001436397.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156530735|gb|ABU75561.1| hypothetical protein ESA_00260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 711

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 11/104 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+ ++I  AI++A  A     A     V +I        V+  +QH + 
Sbjct: 4   HVVKRDGCKVPFNSTRIREAILRAAQAAGVDDADYCATVAEI--------VSSQMQHRRE 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q 
Sbjct: 56  ---VDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQG 96


>gi|257081685|ref|ZP_05576046.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
 gi|256989715|gb|EEU77017.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G + +FD  KI  A++KA   +  +    +  +VQ I+ ++  +   R   + 
Sbjct: 20  IKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFTNN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 79  -----VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|322804365|emb|CBZ01915.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Clostridium botulinum H04402 065]
          Length = 713

 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 18/108 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLLQ 85
           V+KR+G     D  KIS AI         KGA+  I       ++I  +LT++ + ++  
Sbjct: 4   VVKRDGRKVEIDVVKISNAI---------KGAAEEIAFDMKESENI--SLTQKVIKKIED 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            NK    + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S
Sbjct: 53  SNKEE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKS 98


>gi|241765490|ref|ZP_04763455.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
 gi|241364744|gb|EER59744.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
          Length = 672

 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+R+G    FD  +I  A+ +A  A +   A+ +         LT Q V ++L H   
Sbjct: 11  EVIQRSGQRVPFDAERIRAALQRAGKATDEFDAAEAAL-------LTAQVV-KVLIHRFH 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E IQD  E +L+ + H    R Y++YRE+ + +RA
Sbjct: 63  GEAPTVEQIQDVAEQTLIAANHLATARAYIVYREQHATLRA 103


>gi|307706340|ref|ZP_07643152.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307708487|ref|ZP_07644952.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|322376343|ref|ZP_08050836.1| ATP cone domain protein [Streptococcus sp. M334]
 gi|307615403|gb|EFN94611.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|307618258|gb|EFN97413.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|321282150|gb|EFX59157.1| ATP cone domain protein [Streptococcus sp. M334]
          Length = 112

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSLVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|289167678|ref|YP_003445947.1| hypothetical protein smi_0831 [Streptococcus mitis B6]
 gi|307708979|ref|ZP_07645439.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|288907245|emb|CBJ22080.1| conserved hypothetical protein [Streptococcus mitis B6]
 gi|307620315|gb|EFN99431.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 112

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V        +   D+ +NL + T   +L   +
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTV-------YVLTDDLRQNLAQVTKKVVLDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSLVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|23006385|ref|ZP_00048729.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 346

 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 121/315 (38%), Gaps = 71/315 (22%)

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKN------ 468
           G   KS G+  FLK+ +  A A+  GG  R+ A    ++  H D+E F+D +        
Sbjct: 10  GAGAKSSGLRSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWKVKEEQKVA 69

Query: 469 ---TGDDRRRTH---------------------DMNTA----------NWIPDLFMKRVT 494
              TG      H                     + N A            +PD ++KRV 
Sbjct: 70  VLVTGSKVVSKHLSAVMKACIQCEAEGDACFDPERNPALKREIKAARKAMVPDAYIKRVV 129

Query: 495 QNA--GWT-----LFSPDEVSD---------------LHDLYGKEFEIAYENYERQADRG 532
           Q A  G+T     ++  D  S+               L D + +  E A E++   + R 
Sbjct: 130 QFARQGFTKIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDQFLRSVE-ADEDWSLTS-RT 187

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             KV + + A  LW K+    + +  P + F    N        G + +SN C+E     
Sbjct: 188 TGKVSKTLKARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPTGGRIRASNPCSEYMF-- 245

Query: 593 SSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
             ++TA CNL S NLL  +     QFD +      R    VL+  + +     ++  + +
Sbjct: 246 -LDDTA-CNLASANLLTMYDRQTKQFDVEAFEHLNRLWTVVLEISVMMAQFPSKEIAELS 303

Query: 651 HTHRAIGLGLMGFQS 665
           + +R +GLG   + +
Sbjct: 304 YKYRTLGLGYAXYSA 318


>gi|187929185|ref|YP_001899672.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|187726075|gb|ACD27240.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A    G   +I  Q +   +        + H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQAT---GEFDTIEAQHLTSGV--------VAHLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRS 98


>gi|309388303|gb|ADO76183.1| ATP-cone domain protein [Halanaerobium praevalens DSM 2228]
          Length = 235

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ---DIIKNLTEQTVTRLLQHN 87
           VIKR+    ++   KI++AI +A M   G+ A+     Q   D+  +L       +L+  
Sbjct: 8   VIKRDEREVAYSRDKITKAIYRA-MIESGEDATEDDAEQVALDVESDL-------ILEFY 59

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
               I  +E+IQD VE  LM++ +    + Y+LYR +R   R  +   + + P+
Sbjct: 60  NEDQIPKVEEIQDLVEEKLMKAAYVTTAKAYILYRNKRQKTRLKRKKDRQENPL 113


>gi|251782435|ref|YP_002996737.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391064|dbj|BAH81523.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 118

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 16/102 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-----IKNLTEQTVTRL 83
           +Q+IKR+G V  FDP KI +AI+K         A+R++ V D      +  +T++ V  L
Sbjct: 7   MQIIKRDGQVAEFDPDKIYQAIIK---------AARTVYVIDDTWRQNLAQVTKKVVIDL 57

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            + +     +++  IQ  VE  LM +G+  I   Y+ YR +R
Sbjct: 58  EEVHAERPTINM--IQSLVENRLMDAGYITIAEHYISYRLQR 97


>gi|156976928|ref|YP_001447834.1| anaerobic ribonucleoside triphosphate reductase [Vibrio harveyi
           ATCC BAA-1116]
 gi|156528522|gb|ABU73607.1| hypothetical protein VIBHAR_05713 [Vibrio harveyi ATCC BAA-1116]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLQDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|241663376|ref|YP_002981736.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|240865403|gb|ACS63064.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A    G   +I  Q +   +        + H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQAT---GEFDTIEAQHLTSGV--------VAHLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRS 98


>gi|157368772|ref|YP_001476761.1| anaerobic ribonucleoside triphosphate reductase [Serratia
           proteamaculans 568]
 gi|157320536|gb|ABV39633.1| anaerobic ribonucleoside-triphosphate reductase [Serratia
           proteamaculans 568]
          Length = 712

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I +AI +A +AV        I   D    +      R+ Q  +  
Sbjct: 5   VIKRDGCQVPFDEARIGQAIERAALAV-------GIVNADYCATVARVVAQRMSQQQR-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIHEIQQAVENQLMAGEYKQLARAYIEYRHDRDVAR 92


>gi|153832814|ref|ZP_01985481.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
 gi|148870948|gb|EDL69838.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLQDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|189346576|ref|YP_001943105.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           limicola DSM 245]
 gi|189340723|gb|ACD90126.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           limicola DSM 245]
          Length = 721

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P  +   +VIKR+G    FD  KI  A+ +A  AV     +++  + D           R
Sbjct: 3   PHTMVCREVIKRDGRKVPFDAEKIVYAVFRALRAVGRADRAKAAVIAD--------DAIR 54

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            L +  +  +  +EDIQD  E SL         + Y++YR +   +R A+
Sbjct: 55  QLYNPCAGTVPSVEDIQDMAEKSLFLHREFDAAKAYIIYRHQHQYMREAK 104


>gi|182624325|ref|ZP_02952110.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
 gi|177910543|gb|EDT72916.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|46578715|ref|YP_009523.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120603720|ref|YP_968120.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46448127|gb|AAS94782.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563949|gb|ABM29693.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311232588|gb|ADP85442.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I+ AI+KA  A         I+   + K L  +   +L      
Sbjct: 4   QIRKRDGRLETWSTDRIAEAILKALKA-------NGIKDPLLSKRLARKVEAKL----HD 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I   E +QD VE  LM+S  + + R Y++YRE+R ++R
Sbjct: 53  VEIPEQEQVQDNVEQVLMESRLYAVARRYIVYREKRRELR 92


>gi|54302122|ref|YP_132115.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum SS9]
 gi|46915543|emb|CAG22315.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Photobacterium profundum SS9]
          Length = 711

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+       + V+ + +         +L    SA
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVD------EVDVEAMNEAYAASVADGVLSQFMSA 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKS 101


>gi|168217624|ref|ZP_02643249.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
 gi|182380348|gb|EDT77827.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|110802339|ref|YP_699763.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens SM101]
 gi|110682840|gb|ABG86210.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens SM101]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|90578071|ref|ZP_01233882.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
 gi|90441157|gb|EAS66337.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
          Length = 708

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   D+ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAQSINDMDMSEVDAMSVAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKS 98


>gi|328470708|gb|EGF41619.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus 10329]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|309782389|ref|ZP_07677113.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
 gi|308918726|gb|EFP64399.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
          Length = 687

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A    G   +I  Q +   +        + H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQAT---GEFDTIEAQHLTSGV--------VAHLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRS 98


>gi|269959772|ref|ZP_06174151.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
 gi|269835526|gb|EEZ89606.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLQDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|18311489|ref|NP_563423.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens str. 13]
 gi|18146173|dbj|BAB82213.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens str. 13]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|294808479|ref|ZP_06767230.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444306|gb|EFG13022.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 307

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSA-SGIQDEQQL-VADITMNVISQFATP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKSLMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|261368242|ref|ZP_05981125.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
 gi|282569755|gb|EFB75290.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
          Length = 740

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 10/113 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA   V     S+ +    II+ L ++     L    
Sbjct: 1   MKIIKRNGSEAVFDITKIIAAVTKANNVVP---ESQRLTNHQIIE-LADKVQASCLSRGH 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           +   +++E+IQD VE ++M +G +++ R+Y+ YR  +S  R   +H+ +D  I
Sbjct: 57  A---MNVEEIQDIVEDAIMATGAYEVARKYITYRYVQSLKR---THNTTDDRI 103


>gi|168213431|ref|ZP_02639056.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
 gi|170714994|gb|EDT27176.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|153836863|ref|ZP_01989530.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
 gi|149749821|gb|EDM60566.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|296876485|ref|ZP_06900536.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432478|gb|EFH18274.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
          Length = 112

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   ++   +
Sbjct: 1   MEVIKRSGEVVEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVMDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|168205767|ref|ZP_02631772.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|168209745|ref|ZP_02635370.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
 gi|170662686|gb|EDT15369.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|170712053|gb|EDT24235.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|291515766|emb|CBK64976.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Alistipes shahii WAL 8301]
          Length = 795

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 16/111 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMA--VEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + +IKR+G    F   KI RAI KAF A  +  +G +      D+   +T+  ++     
Sbjct: 6   ISIIKRDGKTEPFSLDKIVRAITKAFRAGGITDEGQAVEQIASDVAAAITKAEIS----- 60

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                   +E+IQD VE  LM+  +  I + Y++YRE R+  R  +S  KS
Sbjct: 61  --------VEEIQDMVEERLMKR-NPSIAKRYIIYREWRNVERDRRSSIKS 102


>gi|91224720|ref|ZP_01259981.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
 gi|91190608|gb|EAS76876.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLRAHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|241589596|ref|YP_002979621.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
 gi|240868308|gb|ACS65967.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
          Length = 442

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           INL  + A     NN FD  +L   IR AVR LD++ D+   T+    +     R IG+G
Sbjct: 217 INLCDYLADTPRENNWFDSKRLEEQIRLAVRELDSMHDVK-ETLGCLGQPGLGRR-IGIG 274

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G   AL  L +   + +A     +    +   A  AS +LA+E GA   F    +  G
Sbjct: 275 ISGVAFALQQLGVAGNADKARAALAQVTRIVRDEAYRASCDLAEEVGASPWFDSVEFHTG 334

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             P+                   +LP  EL +R++T G+RN++    A
Sbjct: 335 --PV-----------------ADQLP-PELVERIRTYGLRNAHIFGWA 362


>gi|110798770|ref|YP_697194.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens ATCC 13124]
 gi|110673417|gb|ABG82404.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens ATCC 13124]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I    ++ +  +    K
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTI----QKVINYIEMSGK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  TD--VTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|28900796|ref|NP_800451.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260365699|ref|ZP_05778213.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
 gi|260896111|ref|ZP_05904607.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|260902097|ref|ZP_05910492.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|28809242|dbj|BAC62284.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088140|gb|EFO37835.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|308109924|gb|EFO47464.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|308111794|gb|EFO49334.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|89075721|ref|ZP_01162116.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
 gi|89048584|gb|EAR54158.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
          Length = 708

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   D+ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAQSINDMDMSEVDAMSVAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKS 98


>gi|322411829|gb|EFY02737.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323127322|gb|ADX24619.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 112

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 16/102 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-----IKNLTEQTVTRL 83
           +Q+IKR+G V  FDP KI +AI+K         A+R++ V D      +  +T++ V  L
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIK---------AARTVYVIDDTWRQNLAQVTKKVVIDL 51

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            + +     +++  IQ  VE  LM +G+  I   Y+ YR +R
Sbjct: 52  EEVHAERPTINM--IQSLVENRLMDAGYITIAEHYISYRLQR 91


>gi|262395407|ref|YP_003287260.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
 gi|262339001|gb|ACY52795.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I         AVE    ++   V     N+      +L  H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQ-------AAVEAAAENKDKDVAIYALNVALAVELQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQS 96


>gi|260892783|ref|YP_003238880.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260864924|gb|ACX52030.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 695

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V  FD ++I+ A+ KA  A  G+        + +++ L    VT         
Sbjct: 7   IVKRDGRVVPFDAARITVAVTKA-AAATGEAVDTGEVTRCVLEELARSGVT--------- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  +E +QD VE  LM+ G+++  + Y+LYR++R  +R  ++
Sbjct: 57  -VPTVEQVQDLVETCLMRLGYYRTAKAYILYRDQRRQIREMKA 98


>gi|195953774|ref|YP_002122064.1| anaerobic ribonucleoside triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933386|gb|ACG58086.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 710

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 30  QVIKR-NGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           +V+KR N     FD ++I +AI KAF AV E KG   +  ++DI K +      R L   
Sbjct: 19  RVLKRDNVTEVDFDVNRIEKAIEKAFDAVSEFKGIDNAY-IKDIAKEVISAICRRGLS-- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
               ++ IE IQD VE +++  G  K+ R Y++Y
Sbjct: 76  ----VITIEQIQDIVEETIIAHGFSKVARAYIVY 105


>gi|315645811|ref|ZP_07898932.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
 gi|315278572|gb|EFU41886.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
          Length = 742

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 24/104 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR-------SIRVQDIIKNLTEQTVT 81
           ++V+KR+G + +F+ S+I +A+ KAF+AVE  GASR        +R   I   + + TV 
Sbjct: 1   MKVMKRDGCLVNFEMSRIVKAVDKAFIAVE--GASREQAALEIGVRAAHIAAGMDQVTV- 57

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                         E+IQD V   L  SG+ ++   Y  YRE R
Sbjct: 58  --------------EEIQDIVVEHLQSSGYTEVAAAYQQYREIR 87


>gi|145219615|ref|YP_001130324.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205779|gb|ABP36822.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 717

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNKS 89
           +IKR+G    FD  KI+ AI +A  AV     +++ ++  D++  L E     L   N+ 
Sbjct: 11  IIKRDGTNAPFDTEKITYAIFRALRAVGKPDRTKAAKLCGDVLARLHE-----LAGENQP 65

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                +E +Q+ VE +L  +G  +  + Y++YR +   +R A+
Sbjct: 66  T----VEGVQNLVEKTLFSTGEFEAAKAYIIYRHQHRTLRDAK 104


>gi|313636849|gb|EFS02470.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL S4-171]
          Length = 100

 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKTTYYLR 904
           A+++D    +    RRQ+ +DQ+ S N Y+  PSG    KL  ++  AW  GLKTTYY+R
Sbjct: 29  AYKVDQFASVRQNGRRQRHVDQSLSFNFYV--PSGIKASKLLELHMTAWNEGLKTTYYVR 86

Query: 905 S 905
           S
Sbjct: 87  S 87


>gi|297243781|ref|ZP_06927711.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
 gi|296888202|gb|EFH26944.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
          Length = 805

 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK--GASRSIRVQDIIKNLTEQTVTRL 83
           +  VQV KR+G V  FDP  I  AI  AF  + GK  G      ++DI  ++  +   R 
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDL-GKEVGPQEEQMIRDISDHIEAEIQDR- 81

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +N  A    IEDIQ  VE SL+++  +++ R Y  YR  R   RA
Sbjct: 82  --YNGPA---KIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRA 123


>gi|254520476|ref|ZP_05132532.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
 gi|226914225|gb|EEH99426.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
          Length = 705

 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK---NLTEQTVTRLLQHN 87
           V+KR+G   SF+  KI+ AI KA   +  +   + + + DI+K   N  E+T        
Sbjct: 4   VVKRDGREVSFNSVKIATAIRKAGDEIGER--LKEVELLDIVKKVINYIEETGNEK---- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                + +E+IQ+ VE SL+ S +  I   Y  YR+ER+ VR  +S
Sbjct: 58  -----ITVEEIQNLVEKSLIDSNYKNIKTAYSSYRKERTKVREIKS 98


>gi|187735364|ref|YP_001877476.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425416|gb|ACD04695.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 698

 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    +   KI  AI KAF +  G   +RSI           + V   L H  SA
Sbjct: 5   IIKRSGKKEQYQGYKIEEAIRKAFHS-SGTAYNRSIY----------EEVEAKLSHQDSA 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              H+E+IQD +E +L +SG+    + ++ YR
Sbjct: 54  ---HVEEIQDMIERALFRSGYFDTAKAFITYR 82


>gi|312278622|gb|ADQ63279.1| Anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           thermophilus ND03]
          Length = 112

 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK----NLTEQTVTRLL 84
           +Q+IKRNG V  FDP KI +AI+KA   V     S    +  + K    +L +  V R  
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDSWRQNLAQVTKKVALDLQDAQVER-- 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     I  IQ  VE  LM++G   I   Y+ YR +R
Sbjct: 59  --------PTINMIQSLVENRLMEAGFINIAEHYISYRLQR 91


>gi|311106099|ref|YP_003978952.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
 gi|310760788|gb|ADP16237.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
          Length = 668

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V +FD  KI++A+  A       G S         + LT+  +  L  +   
Sbjct: 9   HILKRDGRVAAFDRDKIAQAMAAA-------GQSTGELDLAGAQTLTDGVIAALAGNPCP 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E IQ++VE +L+Q+GH +  R Y+++RE+ + +R+
Sbjct: 62  G----VETIQNRVEEALVQAGHWRTARAYIVHREQHARLRS 98


>gi|149911726|ref|ZP_01900333.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
 gi|149805199|gb|EDM65217.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
          Length = 711

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI  A  +V+ +    ++ + + ++ +       + Q   S 
Sbjct: 5   VIKRDGCRVRFNIQRIQDAIFAAAKSVQQQSRDHAVEMANKVQKIL------ITQDVSSE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + I  IQ+ VE  LMQ  +  I R Y+ YR +R   R  QS
Sbjct: 59  HAIEIHTIQNTVEDVLMQESNKLIARAYIEYRHQRDIARETQS 101


>gi|260888087|ref|ZP_05899350.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|330839966|ref|YP_004414546.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|260862116|gb|EEX76616.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|329747730|gb|AEC01087.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
          Length = 777

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           IK +Q  KR G +  FD  KI+ AI KA +    +  S     Q  ++ LT+  + R+  
Sbjct: 2   IKNIQ--KRTGQIVPFDAEKITDAIRKANLESIDETFS-----QHQLEKLTKSVIHRIEG 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               A    +E IQD VE +L+++      + Y+LYR E + +R A+ 
Sbjct: 55  EETPA----VEFIQDAVEKALIKNNFASTAKAYILYRAEHAKIRDAEG 98


>gi|262283635|ref|ZP_06061400.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
 gi|262260692|gb|EEY79393.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
          Length = 734

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V         +++ I + +  +   R  Q
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEVTPMSPLLEAKLEGITEKIVAEITHRFSQ 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R
Sbjct: 72  D------VKIYEIQNIVEHELLNANEYAIAKAYISYRTQR 105


>gi|290581341|ref|YP_003485733.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
 gi|254998240|dbj|BAH88841.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
          Length = 734

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V VIKR+G   +FD  KI +AI++A   V         ++  I   +  +   R  ++  
Sbjct: 15  VIVIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAEIYERFTEN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERS 110


>gi|157151175|ref|YP_001451281.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157075969|gb|ABV10652.1| ribonucleoside-triphosphate reductase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 734

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V         +++ I + +  +   R  Q
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEVTPMSPLLEAKLEGITEKIVAEITHRFSQ 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R
Sbjct: 72  D------VKIYEIQNIVEHELLNANEYAIAKAYISYRTQR 105


>gi|24380409|ref|NP_722364.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           mutans UA159]
 gi|24378433|gb|AAN59670.1|AE015029_9 putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans UA159]
          Length = 734

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V VIKR+G   +FD  KI +AI++A   V         ++  I   +  +   R  ++  
Sbjct: 15  VIVIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAEIYERFTEN-- 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+
Sbjct: 73  ----IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERS 110


>gi|257063213|ref|YP_003142885.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790866|gb|ACV21536.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 737

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD SKI  AI  A   V  K      +V    +N+ +Q          
Sbjct: 1   MKIIKRNGSEVTFDISKIINAIKAANAEVSEKERLTERQVVYAAQNVADQC-------EA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E+IQD VE  +M+    ++ R+Y++YR
Sbjct: 54  AGHSVSVEEIQDMVEDEIMKLDRFEVARKYIIYR 87


>gi|125623154|ref|YP_001031637.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|4098081|gb|AAD00215.1| anaerobic ribonucleotide reductase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491962|emb|CAL96888.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069900|gb|ADJ59300.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 747

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  A+ KA   VE       +  + ++  LT++ V+ +   ++
Sbjct: 15  INVIKRDGRSVKFNSEKIFDALTKAAKKVE-------LTDKSVLSELTDRVVSEIF--SR 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  V I +IQ  VE  L++SG   +  EY+ YR  R   R
Sbjct: 66  FSENVKIYEIQSIVEQELLESGETALAEEYISYRANRDLAR 106


>gi|331002724|ref|ZP_08326239.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330407137|gb|EGG86641.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 728

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  AI KA  AV G+         D I N  E    + +  N+
Sbjct: 7   MRIIKRSGAEVDFDISKIIAAIYKA-NAVVGEDDKLKKSQVDRIANTVE---NQCMSMNR 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   + +E+IQD VE  +M+   +++ R+Y+ YR
Sbjct: 63  A---MSVEEIQDMVEDGIMRENAYEVARKYITYR 93


>gi|302669117|ref|YP_003832942.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
 gi|302397457|gb|ADL36360.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
          Length = 751

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG    FD  K+  AI KA  A   +    SI +  I  ++ E         N + 
Sbjct: 3   IIKRNGTEVEFDIEKVKTAISKANEASSERARMNSIYIDAIASDVEEYA-------NNTV 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +EDI D++E  LM+    ++ + ++ YR  R+ VR A +
Sbjct: 56  ATLTVEDISDKIELLLMKMA-PEVAKNFMNYRHNRALVRKANT 97


>gi|146318383|ref|YP_001198095.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|146320575|ref|YP_001200286.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|145689189|gb|ABP89695.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|145691381|gb|ABP91886.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|292558174|gb|ADE31175.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           GZ1]
          Length = 124

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 22/113 (19%)

Query: 22  FPEKIKG--VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTE 77
           F E  KG  +QVIKR+G +  FDP KI +AI+K         A++++ V D    KNL +
Sbjct: 4   FTENQKGAFMQVIKRSGEIVEFDPDKIYQAIIK---------AAQTVYVIDETWRKNLAQ 54

Query: 78  QTVTRLLQHNKSALIVHIED-----IQDQVECSLMQSGHHKITREYVLYREER 125
            T   +L   ++    H E      +Q QVE  L+ +G+  I   Y+ YR +R
Sbjct: 55  VTKKVVLDLEEA----HTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQR 103


>gi|223932456|ref|ZP_03624458.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|253751528|ref|YP_003024669.1| ATP-binding protein [Streptococcus suis SC84]
 gi|253753429|ref|YP_003026570.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|253755743|ref|YP_003028883.1| ATP-binding protein [Streptococcus suis BM407]
 gi|330832683|ref|YP_004401508.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
 gi|223898910|gb|EEF65269.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|251815817|emb|CAZ51425.1| ATP-binding protein [Streptococcus suis SC84]
 gi|251818207|emb|CAZ56008.1| ATP-binding protein [Streptococcus suis BM407]
 gi|251819675|emb|CAR45457.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|319757960|gb|ADV69902.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis JS14]
 gi|329306906|gb|AEB81322.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
          Length = 112

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 20/104 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLLQH 86
           +QVIKR+G +  FDP KI +AI+K         A++++ V D    KNL + T   +L  
Sbjct: 1   MQVIKRSGEIVEFDPDKIYQAIIK---------AAQTVYVIDETWRKNLAQVTKKVVLDL 51

Query: 87  NKSALIVHIED-----IQDQVECSLMQSGHHKITREYVLYREER 125
            ++    H E      +Q QVE  L+ +G+  I   Y+ YR +R
Sbjct: 52  EEA----HTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQR 91


>gi|154483115|ref|ZP_02025563.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
 gi|149735923|gb|EDM51809.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
          Length = 368

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    FD  KI  AI KA   VE        +++ + K + +Q    + Q N +
Sbjct: 7   RVIKRNGEEVVFDVQKILNAIRKANNEVEPIHRLNEYQIEAVGKIVMDQ----ICQSNHA 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +   EDIQD VE  +M+   +++ + YV YR +R   R A +
Sbjct: 63  TAV---EDIQDMVERGIMEMRGYEVAQIYVRYRYKRDMARKANT 103


>gi|153809477|ref|ZP_01962145.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
 gi|149127858|gb|EDM19081.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
          Length = 797

 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +   + I   DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDEQQLI--ADITMNVISQFATP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKALMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|319945850|ref|ZP_08020100.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
 gi|319747915|gb|EFW00159.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
          Length = 736

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI RA++KA   V G   +   +++ +   +  + + R  +     
Sbjct: 17  VEKRDGRKVKFDVDKIYRALVKATEEVTGLTPALEAKLETVTDRIVAEILERFPRG---- 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 73  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 110


>gi|157164943|ref|YP_001467813.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           concisus 13826]
 gi|112801754|gb|EAT99098.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           concisus 13826]
          Length = 700

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 17/95 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--HN 87
           +++KR+G    F   KI  AI KAF A E K                EQ  T ++Q    
Sbjct: 3   EILKRDGTRQEFVAYKIVDAIKKAF-ASENKA-------------YDEQVFTNVVQDIFQ 48

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           KS+ I  +EDIQD +E  L   GH ++ + ++LYR
Sbjct: 49  KSSAIT-VEDIQDAIEKELFDGGHFEVLKSFMLYR 82


>gi|255691221|ref|ZP_05414896.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
 gi|260623135|gb|EEX46006.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
          Length = 797

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A  G    + + V DI  N+  Q  T         
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFNAT-GIQDEQQL-VADITMNVISQFATP-------- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 58  -TITVEEIQDLVEKALMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|62996800|gb|AAY24450.1| ribonucleoside-diphosphate reductase large chain precursor
           [Costelytra zealandica iridescent virus]
          Length = 378

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 17/157 (10%)

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF------------KDPCNI 569
           Y N+    D   IK  ++I A  L      + F     ++T              D    
Sbjct: 224 YHNFLSLEDDSTIKNLKRICAQDLPCNFKVLYFYQNLDFVTTVKVTKITHLSQRADTYCF 283

Query: 570 RSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             P  + GV +   +  C+EI L +    TAVC L S+NL   + +N  D ++    + T
Sbjct: 284 SEPLNNAGVFNGILTGQCSEIILPTDENRTAVCCLASLNL--DYYDNWCDNEQFYLDVAT 341

Query: 628 AV-RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            +  VL   ID    ++++A  S  + RAIG+G+MG 
Sbjct: 342 YLDNVLQYFIDNAPRSLKRAIYSAESERAIGIGVMGL 378


>gi|14270378|emb|CAC39437.1| UL39 protein [Suid herpesvirus 1]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 20/173 (11%)

Query: 305 YFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKRAVE-FYNLLSSFHFMC 353
           Y   +   R E    FF+R+A          M L L  ++      + ++  L++   + 
Sbjct: 201 YLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDAYFRALATQAIVP 260

Query: 354 STPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRGLG 411
           +TP +  +G     L+SC+L   +P        A+  E A +    GG+G        L 
Sbjct: 261 ATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLS------LQ 314

Query: 412 AHIHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +     +G  ++G++  LK  +    A+N   +R   VC Y+E WH DV   L
Sbjct: 315 SFNRTPSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVL 367


>gi|326405849|gb|ADZ62920.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 747

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +    +
Sbjct: 15  INVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF--TR 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  V I +IQ  VE  L++SG  ++  EY+ YR  R   R
Sbjct: 66  FSENVKIYEIQSIVEQELLESGETQLAEEYISYRANRDLAR 106


>gi|120599363|ref|YP_963937.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|146292640|ref|YP_001183064.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           putrefaciens CN-32]
 gi|120559456|gb|ABM25383.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|145564330|gb|ABP75265.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           putrefaciens CN-32]
 gi|319425944|gb|ADV54018.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           putrefaciens 200]
          Length = 705

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           VIKR+G  T FD ++I  A+M A  +V    E   A+ +  V   + +LTE         
Sbjct: 4   VIKRDGCRTPFDETRIRDAVMAAANSVGIEDEDYAATVAACVSQRVASLTE--------- 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  ------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICREATS 95


>gi|15672255|ref|NP_266429.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|12723134|gb|AAK04371.1|AE006264_10 anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 747

 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +    +
Sbjct: 15  INVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF--TR 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  V I +IQ  VE  L++SG  ++  EY+ YR  R   R
Sbjct: 66  FSENVKIYEIQSIVEQELLESGETQLAEEYISYRANRDLAR 106


>gi|261405435|ref|YP_003241676.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
 gi|261281898|gb|ACX63869.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
          Length = 744

 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR---SIRVQDIIKNLTEQTVTRLLQ 85
           ++V+KR+G +  F+  +I  A+ +AFMAVE  G SR   S+R+ D + + T         
Sbjct: 1   MKVMKRDGCLVKFETIRIVEAVDRAFMAVE--GVSRKDASLRIGDEVAHATAGMEQ---- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                  V +E+IQD V   L  +G+ ++   Y  YRE R
Sbjct: 55  -------VSVEEIQDIVVEHLQSTGYPEVASAYQHYREAR 87


>gi|114563613|ref|YP_751126.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           frigidimarina NCIMB 400]
 gi|114334906|gb|ABI72288.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 705

 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G  T+FD  +I  A++ A   +E  G +     Q + + + +Q   +        
Sbjct: 4   VVKRDGCRTAFDGCRIKEAVVAA---MESAGIADHQYAQQLAQTVEQQMTVKTE------ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I ++QD VE  LM      + R Y+ YR +R   R  QS
Sbjct: 55  --VDIHELQDAVENLLMSGPFKSVARHYIEYRHDRDKHRETQS 95


>gi|288926570|ref|ZP_06420487.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
 gi|288336647|gb|EFC75016.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK- 337
            A  LKY   F  + L  ++  ++Y +  +   I  + P+    R+A  +A  E +    
Sbjct: 13  FAASLKY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEMARIERKYANP 69

Query: 338 -RAVEFYNLLSSFHFMCSTPT-LFNSGTRH--PQLSSCFLTTVPDDL--YG-IFGALQEN 390
               E + LL  F ++    + +   G  H    LS+CF+  +  D   YG I    +E 
Sbjct: 70  LSEEEIFGLLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDEEQ 129

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G+R
Sbjct: 130 VQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDGRR 183


>gi|295399143|ref|ZP_06809125.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110254|ref|YP_003988570.1| ribonucleotide reductase large subunit [Geobacillus sp. Y4.1MC1]
 gi|294978609|gb|EFG54205.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215355|gb|ADP73959.1| ribonucleotide reductase large subunit [Geobacillus sp. Y4.1MC1]
          Length = 262

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 323 RVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VP 377
           R A GLA  E  +EKR     +FY  L S +F+ +   L+ +G+ +     +C++   V 
Sbjct: 136 RNATGLAAVEKTEEKRKEWFEKFYQELVSLNFVPAGRVLYGAGSGKDVTYFNCYVMPYVK 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R       G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKR 444
           V QGG R
Sbjct: 256 VEQGGSR 262


>gi|332652519|ref|ZP_08418264.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332517665|gb|EGJ47268.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 712

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D SKI  AI KA   V  +      R++ I+  + +    +L     
Sbjct: 5   MKVVKRDGSVVDYDRSKIITAIQKANAEVSEEEQLSLDRIEAIVSRIEDLGRDKL----- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +E+IQD VE  L+      + + Y++YR  R+ VR   +  +S
Sbjct: 60  -----PVEEIQDLVEQGLVNENKFYLAKTYIIYRYTRALVRKQNTTDES 103


>gi|281490762|ref|YP_003352742.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374531|gb|ADA64052.1| Anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 747

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +    +
Sbjct: 15  INVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF--TR 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  V I +IQ  VE  L++SG  ++  EY+ YR  R   R
Sbjct: 66  FSENVKIYEIQSIVEQELLESGETQLAEEYISYRANRDLAR 106


>gi|116511094|ref|YP_808310.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116106748|gb|ABJ71888.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 747

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +    +
Sbjct: 15  INVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF--TR 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            +  V I +IQ  VE  L++SG  ++  EY+ YR  R   R
Sbjct: 66  FSENVKIYEIQSIVEQELLESGETQLAEEYISYRANRDLAR 106


>gi|225026315|ref|ZP_03715507.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
 gi|224956325|gb|EEG37534.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
          Length = 720

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           +++IKR+G    FD SKI  A+ +A  +V EG+  S   +V+ I +N+  +T+   +  N
Sbjct: 1   MKIIKRSGMEVEFDRSKIIAAVKRANNSVVEGEKVSDE-QVEKIAENV--ETICEGM--N 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           ++   +++E+IQD VE  +M     ++   Y+ YR +R+ VR + S  K
Sbjct: 56  RA---LNVEEIQDLVENQIMNQKAFRLASNYITYRYKRALVRKSNSTDK 101


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+   + F  +KIS AI KA M+V G G         I  N+ +  + R  +    
Sbjct: 10  EIIKRDYETSPFVLNKISNAIEKAMMSV-GNGTKED--ANGISVNVLQTLLER--KGKDH 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + +  +E++QD VE  LM S    + + Y+LYR+E++  R      K
Sbjct: 65  SYLPTVEEVQDLVEEKLMGSAFPNVAKAYILYRDEQARNRKTNIFEK 111


>gi|146301794|ref|YP_001196385.1| anaerobic ribonucleoside triphosphate reductase [Flavobacterium
           johnsoniae UW101]
 gi|146156212|gb|ABQ07066.1| anaerobic ribonucleoside-triphosphate reductase [Flavobacterium
           johnsoniae UW101]
          Length = 707

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    F+  KI  AI KAF +V         ++  I+ N  E   +         
Sbjct: 5   VIKRNGDYKPFEAYKIQDAIQKAFKSV---NLPMDKKILKIVLNGLEPKYS--------- 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               +E+IQD +E  L ++G+ K  R +++YR  R
Sbjct: 53  --WPVEEIQDSIERVLFENGYFKTMRSFIIYRHTR 85


>gi|167948702|ref|ZP_02535776.1| anaerobic ribonucleoside triphosphate reductase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 436

 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G    FD  KI  AI  A  A        S   +D    L    V ++L H  
Sbjct: 14  TKVRKRDGSEVDFDLDKIRTAIRLAGQA--------SGEYEDAEAQLLTAQVLKVLTHTG 65

Query: 89  -SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +  IE IQD VE  L+ S H K  R Y++YRE+   +R
Sbjct: 66  YREHVPDIERIQDIVEQVLISSNHLKTARAYIVYREQHKKLR 107


>gi|223038337|ref|ZP_03608631.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
 gi|222880194|gb|EEF15281.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
          Length = 718

 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    + P KI  AI KAF +                K   ++    ++ H   +
Sbjct: 21  ILKRDGTKQEYLPYKIQDAIKKAFESES--------------KEYDDKVFLDVMGHVFDS 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            ++ +EDIQD +E +L  +GH  + + ++LYR
Sbjct: 67  EVLSVEDIQDYIEKALFNAGHFDVMKSFMLYR 98


>gi|328956597|ref|YP_004373983.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
 gi|328672921|gb|AEB28967.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
          Length = 738

 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G    F   KI  A++KA  ++E +    +++ ++ I+  + E+   R     
Sbjct: 18  LKVLKRDGREVEFKEEKIFSALLKAHQSLEKETDKETVKELKGIVTKVKEEIAKRF---- 73

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  + I +IQ  VE +L+ +  H +   Y+LYR  R D+  +QS
Sbjct: 74  --SADIKIYEIQSIVEHTLLDAHEHDLAEAYLLYRSRR-DLERSQS 116


>gi|170696403|ref|ZP_02887531.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
 gi|170138664|gb|EDT06864.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
          Length = 430

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 43/205 (20%)

Query: 699 VELAQERGAYSSF-KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           +EL +ERGA++ F   S    G F                    SRLP D +K+ ++  G
Sbjct: 1   MELTKERGAFALFDTASYLKAGTF-------------------ASRLPED-IKEAIRRDG 40

Query: 758 MRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++ APT T+  A     S  I+P++   Y +  +  D     SF V +   R L
Sbjct: 41  IRNSHLLSNAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGG-RESFDVEDYAYR-L 98

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ--AQSL 873
           + E             G++ R+PD       +A E+     ++  +  Q ++D   ++++
Sbjct: 99  YRELG-----------GDVTRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTV 143

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLK 898
           N+  D P  +  + +Y  AW  GLK
Sbjct: 144 NVPADYPF-EAFESLYFDAWKSGLK 167


>gi|222153086|ref|YP_002562263.1| ATP-binding protein [Streptococcus uberis 0140J]
 gi|222113899|emb|CAR42086.1| ATP-binding protein [Streptococcus uberis 0140J]
          Length = 112

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +Q+IKR+G V  FDP KI +AI+KA   V    E    + +   + ++ +L E  V +  
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAAQTVYVIDENWRQNLAQVTKKVVIDLEEAKVEK-- 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     I  IQ  VE  LM +G+  I   Y+ YR +R
Sbjct: 59  --------PTINMIQSLVENRLMDAGYINIAEHYISYRLQR 91


>gi|85540870|gb|ABC70820.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    N  
Sbjct: 11  WSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPNVM 70

Query: 806 LVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           L+ +L    K +D  D   +  L+ H   +G  E  P DL K HA
Sbjct: 71  LLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFP-DLPKDHA 110


>gi|315633672|ref|ZP_07888962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
 gi|315477714|gb|EFU68456.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
          Length = 708

 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV+       I+ +    ++ ++    +  H++  
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAVD-------IQDERFCHDIAQKVSNDIFAHHQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S 
Sbjct: 59  --IDISHIQKIVENHLMASQYPQIARAYIEYRHERDMAREKRSQ 100


>gi|328955274|ref|YP_004372607.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
 gi|328455598|gb|AEB06792.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
          Length = 745

 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 17/99 (17%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-- 86
           +++IKR+G   +FD  KIS AI         +GA++ ++  D    LTE+ V    Q+  
Sbjct: 6   MKIIKRSGVEVAFDVDKISSAI---------RGANKEVKEAD---RLTERQVIYASQNVA 53

Query: 87  ---NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
               ++   V +E+IQD VE  +M     ++ R Y++YR
Sbjct: 54  EACERAGHTVSVEEIQDLVEDEIMALDRFEVARRYIIYR 92


>gi|239909107|ref|YP_002955849.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798974|dbj|BAH77963.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 684

 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 9/100 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A   +    + R+   ++   E+    + +    
Sbjct: 4   QIRKRDGCLETWSSQRIAQAILKALKASGIQDPILAARLAGKVEGKLEELGNDVPEQ--- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 E +QD VE  LM+S    + R Y++YRE+R ++R
Sbjct: 61  ------EHVQDAVELVLMESRLFAVARRYIVYREKRRELR 94


>gi|333029184|ref|ZP_08457245.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
 gi|332739781|gb|EGJ70263.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
          Length = 794

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 25/160 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  A+ KAF A    G S+      I   +T + V ++       
Sbjct: 8   IIKRDGKKEVFSPLKIQNALSKAFTATGINGDSQ------ITSEITNRVVDKI-----QL 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E +QD VE  LM+  +  + ++Y++YR+ R+  R  ++          K+K +MD
Sbjct: 57  DTISVEQVQDLVENELMKV-YPDVAKKYIIYRDWRTTEREKKT----------KMKHIMD 105

Query: 151 DGTLISFNSKRL---EMIVEEACSGLQDVSSKIVLSETYK 187
               I  N   L    M        +   +S++    TYK
Sbjct: 106 GIVAIDTNDVNLSNANMSSHTPAGQMMTFASEVTKDYTYK 145


>gi|298385135|ref|ZP_06994694.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
 gi|298262279|gb|EFI05144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
          Length = 797

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A           +QD  + + + T++ + Q     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATG---------IQDEQQLIADVTMSVISQFTNPT 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + V  E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 59  ITV--EEIQDLVEKALMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|152991850|ref|YP_001357571.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
 gi|151423711|dbj|BAF71214.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
          Length = 698

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  AI KAF + E K   + +              T L++  K  
Sbjct: 5   IIKRDGASQKFVPFKIEDAIKKAFDS-EAKAYDKHV-------------FTELMESIKDR 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             + +E+IQD +E  L +  H ++ R ++LYR
Sbjct: 51  DEISVEEIQDLIEKVLYEHRHFEVMRSFILYR 82


>gi|332290045|ref|YP_004420897.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
 gi|330432941|gb|AEC18000.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
          Length = 726

 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD   I  A+ KA  AV       +I      + L+++    +L  N   
Sbjct: 24  VIKRDGSKAQFDAQFILNAMKKAAQAV-------NIEDDGYFEQLSQEISFEIL--NGVN 74

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I DIQ  VE  LMQS + ++ R Y+ YR +R   R  +S 
Sbjct: 75  QQIDIADIQQVVENHLMQSRYPQVARAYIEYRHDRDKEREKRSQ 118


>gi|313890446|ref|ZP_07824076.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522961|ref|ZP_08399213.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
 gi|313121189|gb|EFR44298.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332314225|gb|EGJ27210.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRL 83
           +Q+IKR+G V  FDP KI +AI+K         A+R++ V D      +  +T++ V  L
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIK---------AARTVYVIDETWRQNLAQVTKKVVIDL 51

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            +       +++  IQ  VE  LM +G   I   Y+ YR +R
Sbjct: 52  EEAKVEKPTINM--IQSLVENRLMDAGFINIAEHYISYRLQR 91


>gi|238755179|ref|ZP_04616525.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
 gi|238706626|gb|EEP98997.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
          Length = 712

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV            D++      TV R++      
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAV------------DVVDADYCATVARVVAQKMEK 52

Query: 91  LI-VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           L  V I +IQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  LAQVDIREIQEAVENQLMAGDYKQLARAYIEYRHDRDVSR 92


>gi|315301268|ref|ZP_07872490.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
 gi|313630362|gb|EFR98273.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
          Length = 598

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 11/108 (10%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  AI         + + ++I ++D  ++  E+ + 
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAI---------EASMKAINLED--ESFLEEVLL 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            ++    +   + I++IQ+ VE +LM+S +  + R Y+ YR +R   R
Sbjct: 51  EVVSELPNKADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHER 98


>gi|255321696|ref|ZP_05362851.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
 gi|255301176|gb|EET80438.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
          Length = 701

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    + P KI  AI KAF +                K   ++    ++ H   +
Sbjct: 4   ILKRDGTKQEYLPYKIQDAIKKAFESES--------------KEYDDKVFLDVMGHVFDS 49

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            ++ +ED+QD +E +L  +GH  + + ++LYR
Sbjct: 50  EVLSVEDVQDYIEKALFNAGHFDVMKSFMLYR 81


>gi|323700675|ref|ZP_08112587.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323460607|gb|EGB16472.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 685

 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 13/105 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA  A              I   L  + + R ++    
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKALSA------------SGIKDPLLARRLARKVEKKLD 51

Query: 90  AL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            + I   E +Q+ VE  LM+   + I ++Y+LYRE+R  +R+ ++
Sbjct: 52  GMDIPEQEHVQNMVEQVLMEGRQYDIAKKYILYREKRRQLRSQKA 96


>gi|90413429|ref|ZP_01221421.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
 gi|90325517|gb|EAS41994.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
          Length = 711

 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+       + V+ + +         +L    S 
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVD------EVDVEAMSEAYAASVADGVLSQFMSV 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKS 101


>gi|289433629|ref|YP_003463501.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169873|emb|CBH26413.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 716

 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  AI  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAI-------NLEDEPFLEEVLLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+I+ N+ +
Sbjct: 110 ----KLLQKDKTVINENANK 125


>gi|209809560|ref|YP_002265099.1| anaerobic ribonucleoside triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
 gi|208011123|emb|CAQ81545.1| anaerobic ribonucleoside-triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
          Length = 706

 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
           + VIKR+G   +++ S+I  A+         KGAS  +  + +    L    V   LQ  
Sbjct: 3   ITVIKRDGSRAAYENSRIIDAV---------KGASEQVTPEIESYAQLVAHAVEVALQGQ 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           K    V I  IQD VE  LMQ  H  + R Y+ YR +R   R
Sbjct: 54  KE---VGIRQIQDLVENELMQGPHKVLARAYIEYRHDRDIAR 92


>gi|91792777|ref|YP_562428.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           denitrificans OS217]
 gi|91714779|gb|ABE54705.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           denitrificans OS217]
          Length = 704

 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  A++ A        AS + +  D    L EQ V + +Q  +  
Sbjct: 4   VIKRDGCRTVFNAERIQEAVIAAM-------ASANKQDVDYACTLAEQ-VRQQMQGKRE- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I ++QD VE  LM   +  + R Y+ YR +R   R A+S
Sbjct: 55  --VDIHELQDAVENLLMAGPYKAVARHYIEYRHDRDLCREAKS 95


>gi|332686125|ref|YP_004455899.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
 gi|332370134|dbj|BAK21090.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 730

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHN 87
           +++IKR+G +  F   KI  A+MKA   + G     +  R+Q+I+  + ++   R   + 
Sbjct: 19  IKIIKRDGRLVDFSNKKIYDALMKAERQINGSLDPLAYERIQEILDRVDQEISERFTNN- 77

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE +L++   +++   Y+ YR  R   R+
Sbjct: 78  -----VKIYEIQNIVEHTLLEKNEYELAEAYINYRTRRDFERS 115


>gi|9625480|ref|NP_039714.1| predicted 76.3Kd protein [Mycobacterium phage L5]
 gi|465265|sp|Q05262|VG50_BPML5 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|579135|emb|CAA79426.1| gene 50 [Mycobacterium phage L5]
          Length = 682

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 155/421 (36%), Gaps = 129/421 (30%)

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFL----KVAN------------------DTAVA--V 438
           D + +R  GA +    G + G +PF     KVAN                  D A+A  V
Sbjct: 201 DVSRIRPQGAKLKTFGGVASGPLPFAVMLQKVANIFSEYAGITLDGIAAMEVDHAIAQCV 260

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
             GG R+ A  + +      +++F++++ +TG+           +W  ++ ++    +  
Sbjct: 261 VAGGVRRSARMSMMHWDDYQIDKFINIKASTGE-----------HWTTNISVE--VDDEF 307

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L          + YG  F +A E+  +Q  +   +V + +S  A+           G 
Sbjct: 308 WRL--------AKEGYGS-FAVAREDMPKQ--KRAHRVLKALSEGAV---------RNGE 347

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P +      N+  P +    V  +N C EITL    E    CNLG INL A      + D
Sbjct: 348 PGMWDSSLSNVGEPNR----VVCTNPCGEITL----EPWEPCNLGHINLAAFVTPAGKTD 399

Query: 618 YDKLASTIRTAVRVL-----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           Y  L    R   R L       V D       K+++    +R IG+G +G  S L L   
Sbjct: 400 YLDLIRAHRLMTRFLIRATFSEVAD------PKSREVLDRNRRIGVGHLGVASYLALTGS 453

Query: 673 PYASPEAVEIADESMEFISF-HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            Y+       A     F  F   ++A V+   ER A+                       
Sbjct: 454 RYSE------APGDKRFTQFLREMAAEVDSEAERFAHD---------------------- 485

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      R+P   +KKR             IAPT T+A + GVS+ I P +   ++
Sbjct: 486 ----------LRIP-VPVKKRT------------IAPTGTVAKMPGVSEGIHPIFSRYFI 522

Query: 792 K 792
           +
Sbjct: 523 R 523


>gi|257784926|ref|YP_003180143.1| anaerobic ribonucleoside triphosphate reductase [Atopobium parvulum
           DSM 20469]
 gi|257473433|gb|ACV51552.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium parvulum
           DSM 20469]
          Length = 740

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +F+  KI  AI KA   V          +Q    N+T++         K
Sbjct: 1   MKIIKRNGSEVTFEVEKIVNAIAKANAEVPEDQRLTEREIQFASLNVTDEC-------EK 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E++QD VE  LM     ++ R+Y++YR
Sbjct: 54  AGHTVTVEEVQDLVEDQLMALDRFEVARKYIIYR 87


>gi|323491825|ref|ZP_08097000.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
 gi|323313960|gb|EGA67049.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
          Length = 706

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A   V+ + A  ++ V   ++        +L  H++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVESAAEHVDQEIAVYALNVALAVE-------LQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQTRVENELMQGPYKSLARSYIEYRHDRDIAREKQS 96


>gi|298527845|ref|ZP_07015249.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511497|gb|EFI35399.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 682

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + S+   +I+ AI+KA            ++   I   L    + R ++    
Sbjct: 4   QIKKRDGCMESWSTDRIAHAILKA------------LKASGIKDPLLASRLARKVEGKLH 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I   E +QD VE  LM+S  +   ++Y++YRE+R ++R
Sbjct: 52  EDIPEQETVQDMVEMVLMESRLYDAAKKYIIYREKRRELR 91


>gi|29347408|ref|NP_810911.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253570570|ref|ZP_04847978.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
 gi|29339308|gb|AAO77105.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251839519|gb|EES67602.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
          Length = 797

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 16/108 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQHNK 88
           +IKR+G    F  SKI  AI KAF A   +   + I      +I   T  T+T       
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATGIQNEQQLIADVTMSVISQFTNPTIT------- 60

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 61  ------VEEIQDLVEKALMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|283852526|ref|ZP_06369794.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572134|gb|EFC20126.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 682

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 19/108 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A           +QD +        TRL    + 
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKALKASG---------IQDPL------LATRLAHKVEC 48

Query: 90  AL----IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            L    +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++
Sbjct: 49  KLEDEDVPEQERVQDAVELVLMESRLFGVARRYIVYREKRRELREQKA 96


>gi|251791877|ref|YP_003006597.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533264|gb|ACS96510.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 708

 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I+ +    ++ ++    +  H++  
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAV-------GIQDERFCHDIAQKVSNDIFAHHQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S
Sbjct: 59  --IDISHIQKIVENHLMASRYPQIARAYIEYRHERDMAREKRS 99


>gi|229495535|ref|ZP_04389268.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317518|gb|EEN83418.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 801

 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F+  KI  AI KA+ A   +    S+ V  I+  +  ++V R   H + A
Sbjct: 8   ILKRDGSRQLFEAEKIRSAIYKAYRAGGVRPDPSSVDV--IVARI--ESVAR--AHKEGA 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           L V  EDIQD VE +LM +    I ++Y++YRE R+  R  ++  K
Sbjct: 62  LAV--EDIQDMVEQALMAADPF-IAKKYIIYREWRTVERDKRTRLK 104


>gi|322831246|ref|YP_004211273.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
 gi|321166447|gb|ADW72146.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
          Length = 727

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII-KNLTEQTVTRLLQHNKS 89
           VIKR+G    FD   I +A+ +A  A          +V  I+ +NL +Q           
Sbjct: 20  VIKRDGCQVPFDEVLIKQAVQRAAEAAGIDSVDYCAQVARIVAENLQDQAR--------- 70

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I +IQD VE  LM   H K+ R Y+ YR +R DV+
Sbjct: 71  ---VDIHEIQDAVENQLMAGPHKKLARAYIEYRHDR-DVK 106


>gi|153809894|ref|ZP_01962562.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
 gi|149834072|gb|EDM89152.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
          Length = 763

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +D+I +L    VT   Q+      V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +
Sbjct: 9   KDMI-DLLALRVTADFQNKIQDGKVTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKI 67

Query: 129 RAAQS 133
           R  +S
Sbjct: 68  RNMKS 72


>gi|323698640|ref|ZP_08110552.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323458572|gb|EGB14437.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 11/101 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G + ++   +I  AI KA   ++G G      ++D +  L ++   ++ +  K 
Sbjct: 4   KILKRDGCIETWSTKRIGNAIFKA---LKGSG------IKDPL--LADRLAGKVEKKLKD 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             I   E +QD V+  LM++   K+   Y++YRE+R ++R+
Sbjct: 53  VDIPEQEQVQDMVQEVLMEARLFKVAERYIIYREKRRELRS 93


>gi|312961516|ref|ZP_07776017.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
 gi|311284195|gb|EFQ62775.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           KR+G +  F+P KI +A++ A  A  E + A   + +  ++  L      R + H     
Sbjct: 15  KRDGSLAPFNPEKIRQALIAAGTATGEYQEADVDLLLGAVLARL------RSIDH----- 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            + +E IQD VE  LM +G+    R Y++YRE+   +R
Sbjct: 64  -LDVEQIQDSVERVLMDAGYFLSMRAYIVYREQHGRLR 100


>gi|259047272|ref|ZP_05737673.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
 gi|259036048|gb|EEW37303.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
          Length = 732

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTR 82
           +++K + V KR+G    F   KI RAI KA   + G+  A R   +  I+  + ++   R
Sbjct: 4   QELKTLLVTKRDGREVEFQKEKIERAIFKAETELNGEMDAKREAELNRIVDEVLQEISRR 63

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             +       + I +IQ  +E  L++ G  ++ + Y+ YR +R   R  Q
Sbjct: 64  FSE------TIQIYEIQSIIEHFLIEDGESELAQAYISYRVDRDLRRKNQ 107


>gi|284007690|emb|CBA73439.1| anaerobic ribonucleoside-triphosphate reductase [Arsenophonus
           nasoniae]
          Length = 710

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 13/103 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+M+A   +         +   ++ ++ EQ +      N+  
Sbjct: 5   VIKRDGCQVLFDKNRIKEAVMRAATGICDD------QYCAVVASVVEQQLG-----NRQT 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + +H  +IQD VE  LM   +  + R Y+ YR ER   R  +S
Sbjct: 54  VDIH--EIQDAVENQLMAGRYKDLARNYIAYRHERDIAREQRS 94


>gi|312865276|ref|ZP_07725504.1| ATP cone domain protein [Streptococcus downei F0415]
 gi|311099387|gb|EFQ57603.1| ATP cone domain protein [Streptococcus downei F0415]
          Length = 112

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KR+G V  FDP KI +AI+KA  +V         +++  +  +T++ V  L + + 
Sbjct: 1   MQITKRSGQVVEFDPDKIYQAILKAAQSV----YVLDDKLRQELAEVTKKVVIDLEEAHA 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               + +  +Q QVE  LM +G+  I   Y+ YR +R
Sbjct: 57  DRPTISM--VQSQVENRLMDAGYINIAEHYISYRLQR 91


>gi|255528304|ref|ZP_05395116.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
 gi|255508006|gb|EET84434.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
          Length = 700

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 16/109 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI----RVQDIIKNLTEQTVTRLL 84
           + V+KR+G    FD  KI+ AI         KG+S  I    +  + I+ LT++ + +L 
Sbjct: 2   LHVVKRDGREVEFDSIKITNAI---------KGSSEEIGYDLKESEFIE-LTQKVIKQLE 51

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + + +   +++E IQ+ VE +L+++ + +I   Y  YR+ER+ +R  +S
Sbjct: 52  ELDANE--INVEQIQNFVEKTLLENDYREIGTAYCNYRKERNKIREIKS 98


>gi|303245838|ref|ZP_07332120.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302492621|gb|EFL52489.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 682

 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 19/108 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A           +QD + +      TRL    ++
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKALKASG---------IQDPLLS------TRLAHKVEA 48

Query: 90  AL----IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            L    +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++
Sbjct: 49  KLEGVDVPEQEAVQDAVEQVLMESRLFAVARRYIVYREKRRELREQKA 96


>gi|212635935|ref|YP_002312460.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           piezotolerans WP3]
 gi|212557419|gb|ACJ29873.1| Ribonucleoside-triphosphate reductase [Shewanella piezotolerans
           WP3]
          Length = 705

 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++    A    G   S   + + KN  + +V  L +     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVI---AAANSAGIDDSAYAEKVAKNAAD-SVAMLDE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             ++I D+QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  --INIHDLQDAVENLLMEGPYKSLARVYIEYRHDRDIKREVSS 95


>gi|313639674|gb|EFS04463.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL S4-171]
          Length = 716

 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  AI  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAI-------NLEDEPFLEEVLLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|313635001|gb|EFS01380.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL N1-067]
          Length = 716

 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  AI  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAI-------NLEDEPFLEEVLLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|257465898|ref|ZP_05630209.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917054|ref|ZP_07913294.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690929|gb|EFS27764.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 734

 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF     K  SR+I  +++I  +  Q        N  
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAF-----KQNSRTIP-EELISKIAHQI------ENLE 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I+ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 52  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIR 91


>gi|315221491|ref|ZP_07863411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
 gi|315189325|gb|EFU23020.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
          Length = 740

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 24  EKIKG---VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           E ++G   + V KR+G   +FD  KI +A++KA   V         +++ I   +  + +
Sbjct: 11  ETVQGFADIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVI 70

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            R          V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 71  ERF------PAGVKIYEIQNIVEHELLQANEYAIAESYITYRTQRDFARS 114


>gi|139437341|ref|ZP_01771501.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
 gi|133776988|gb|EBA40808.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
          Length = 740

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A + VE        +V    +N+ E          K
Sbjct: 1   MKIIKRSGTEVTFDIDKIVNAIRAANLEVEEGSRLTDRQVIYAAQNVAEAC-------EK 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E+IQD VE  +M+   +++ R Y++YR
Sbjct: 54  AGHTVSVEEIQDLVEDEIMRLDCYEVARHYIIYR 87


>gi|327399299|ref|YP_004340168.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
 gi|327181928|gb|AEA34109.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
          Length = 995

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G +  FD  KI+ AI KA       G +      +  K LT + +    +  K 
Sbjct: 4   RIVKRDGRIVEFDSEKITTAITKA-------GKATGEFDYETAKKLTIKVLDLAYRFFKG 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                +E+IQD VE  L+ S   K  + Y++YRE+ + +R
Sbjct: 57  KTPT-VEEIQDIVEEVLLSSPFKKTAKAYIIYREQHAQLR 95


>gi|322385546|ref|ZP_08059190.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270284|gb|EFX53200.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
          Length = 112

 Score = 44.7 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V        +   D+ +NL   T    L   +
Sbjct: 1   MKVIKRSGEVVDFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLALVTKKVALDLEE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AKVERATISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|315652796|ref|ZP_07905770.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
 gi|315484998|gb|EFU75406.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  AI KA  AV G+         D I N  E     +   N+
Sbjct: 1   MRIIKRSGAEVDFDISKIIAAIYKA-NAVVGEDDKLKKSQVDRIANTVENQCWSM---NR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   + +E+IQD VE  +M+   +++ R Y+ YR
Sbjct: 57  A---MSVEEIQDMVEDGIMRENAYEVARRYITYR 87


>gi|85540880|gb|ABC70825.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    N  
Sbjct: 11  WSALRPKIIKYGLCNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPNVM 70

Query: 806 LVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           L+ +L    K +D  D   +  L+ H   +G  E  P DL K HA
Sbjct: 71  LLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFP-DLPKDHA 110


>gi|15900138|ref|NP_344742.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
 gi|14971670|gb|AAK74382.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
          Length = 735

 Score = 44.7 bits (104), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKCLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|111658806|ref|ZP_01409437.1| hypothetical protein SpneT_02000104 [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKCLNDLTERIITEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|312866583|ref|ZP_07726798.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
 gi|311097882|gb|EFQ56111.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
          Length = 112

 Score = 44.7 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  F+P KI +AI+KA   V        +   D+ +NL + T    +  ++
Sbjct: 1   MEVIKRSGEVVEFNPDKIYQAILKAAQVV-------YVLTDDLRQNLAQVTKKVAMDLDE 53

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R   R+ 
Sbjct: 54  AQVERATISMIQSLVEQRLLGAGYITIAEHYISYRLQRDLERSG 97


>gi|257463668|ref|ZP_05628058.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 750

 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G +VIKR+G V  FD  +I  AI  AF     K  SR I  ++++  +  Q        N
Sbjct: 18  GKKVIKRDGTVIDFDAQRIVNAISMAF-----KQHSRVIP-EELVSKIAHQI------EN 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               I+ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 66  LENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIR 107


>gi|317061216|ref|ZP_07925701.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
 gi|313686892|gb|EFS23727.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 741

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G +VIKR+G V  FD  +I  AI  AF     K  SR I  ++++  +  Q        N
Sbjct: 9   GKKVIKRDGTVIDFDAQRIVNAISMAF-----KQHSRVIP-EELVSKIAHQI------EN 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               I+ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 57  LENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIR 98


>gi|257452311|ref|ZP_05617610.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|317058854|ref|ZP_07923339.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|313684530|gb|EFS21365.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
          Length = 734

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF     K  SR+I  +++I  +  Q        N  
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAF-----KQNSRTIP-EELISKIAHQI------ENIE 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             I+ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 52  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIR 91


>gi|85540868|gb|ABC70819.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540882|gb|ABC70826.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540884|gb|ABC70827.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           TS+  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TSQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             N  L+ +L    K +D  D   +  L+ H   +G  E  PD
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFPD 104


>gi|195546290|ref|YP_002117548.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
 gi|195537749|dbj|BAG67046.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
          Length = 807

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRN  +  F    I+ A+ KAF  V         ++  I+    + T+ +LL+ NK  
Sbjct: 67  VIKRNKSIAKFHRENITNAVTKAFEDVYSNIEDHITKIDQIV----DLTINKLLRQNK-- 120

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   I +IQ  VE SL+     K+   Y  YR +    R  Q+
Sbjct: 121 MQFDITEIQSAVEQSLVDVEEFKVAEAYTAYRLQHDIDRKKQT 163


>gi|159901278|ref|YP_001547525.1| ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894317|gb|ABX07397.1| Ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 755

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD ++I RA+ + F    G G      V ++      Q V  +L   K  
Sbjct: 21  IIKRDGREVTFDVARIERALTRCFA---GLGRQPHTTVAELA-----QRVVNILAA-KYT 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +E +QD VE  L  +G  +  + Y+LYR E +  R
Sbjct: 72  TTPTVEAVQDTVEVMLQAAGEFEAAKSYILYRAEHAKKR 110


>gi|320530799|ref|ZP_08031839.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
 gi|320136958|gb|EFW28900.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
          Length = 754

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI     A   K  +  +   +I +N+T    T      +S 
Sbjct: 6   VTKRAGHSVPYDRAKILNAI-----AAASKEYAHPMTALEI-ENVTAAVETAF----ESR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H
Sbjct: 56  AEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKH 99


>gi|257869794|ref|ZP_05649447.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
 gi|257803958|gb|EEV32780.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
          Length = 732

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS-IRVQDIIKNLTEQTVTRLLQHN 87
           ++++KR+G +  FD  KI  A++KA   V+G+ +     R+ +I++ +  +   R  ++ 
Sbjct: 20  LKIVKRDGRLVDFDDQKIYDALVKAQRKVKGELSPLDHERILEIVEGIDHEIAERFTKN- 78

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I +IQ+ VE  L+    + +  EY+ YR  R   R     SK+        K+
Sbjct: 79  -----VKIYEIQNIVEHILLAKNEYALAEEYINYRTRRDFER-----SKATDINFTINKL 128

Query: 148 MMDDGTLISFNSKR 161
           M  D T+++ N+ +
Sbjct: 129 MNKDQTVVNENANK 142


>gi|255011119|ref|ZP_05283245.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313148930|ref|ZP_07811123.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313137697|gb|EFR55057.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
          Length = 797

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A    G +     Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVTKAFSAT---GINDE---QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|293393112|ref|ZP_06637427.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
 gi|291424258|gb|EFE97472.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
          Length = 708

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD ++I +AI +A +AV    A     V  ++    EQ            
Sbjct: 1   MIKRDGCQVPFDQARIGQAIERAALAVGVVDADYCATVARVVAQQMEQQQR--------- 51

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 52  --VDIHDIQLAVENQLMAGPYKQLARAYIEYRHDRDVSR 88


>gi|269217079|ref|ZP_06160933.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
 gi|269129216|gb|EEZ60301.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
          Length = 740

 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  AI  A   V       + R+ D   +   Q V        
Sbjct: 1   MKIIKRNGSEVEFDISKIENAITAANAEVPA-----AQRLTDRQISYASQNVADACAEAG 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            A  V +E+IQD VE  +M+    ++ R+Y++YR
Sbjct: 56  HA--VSVEEIQDLVEDEIMKLDRFEVARKYIIYR 87


>gi|313895284|ref|ZP_07828841.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976179|gb|EFR41637.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 754

 Score = 44.3 bits (103), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI     A   K  +  +   +I +N+T    T      +S 
Sbjct: 6   VTKRAGHSVPYDRAKILNAI-----AAASKEYAHPMTALEI-ENVTAAVETAF----ESR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H
Sbjct: 56  AEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKH 99


>gi|253991475|ref|YP_003042831.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638353|emb|CAR66975.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782925|emb|CAQ86090.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica]
          Length = 712

 Score = 44.3 bits (103), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A        AS +    D         VT+L+ ++   
Sbjct: 5   VIKRDGHQVPFDGERIRDAVKRA--------ASAAGVTDDEYCAQVASVVTQLMTNHSQ- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             V I DIQ+ VE  LM   +  + R Y+ YR +R   R   SH
Sbjct: 56  --VDIRDIQNAVENQLMAGNYKHLARIYIEYRHDRDIARELHSH 97


>gi|60416866|emb|CAD71192.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 44.3 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+  AYL  +H D+ EFLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITEFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|325281162|ref|YP_004253704.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312971|gb|ADY33524.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
          Length = 735

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  A+ +A +  + KG       +D+   L  +   R+    +  
Sbjct: 5   VLKRDGRVVGFNEEKIVAAVRRAMLHTD-KG-------EDM--QLAHEIADRIACRGQEQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + V  EDIQ+ VE  LM+S    + + Y+ YR +RS  R A++
Sbjct: 55  MSV--EDIQNCVEIELMKSRRKDVAQLYIAYRNQRSVARKAKT 95


>gi|269469073|gb|EEZ80628.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           SUP05 cluster bacterium]
          Length = 445

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    FD  KI  AI++A    E           D    L    V ++L H +
Sbjct: 10  LSVIKRDGTTVFFDSEKIHLAILRAGQVSE--------EFDDNEAGLLTAQVLKVLGH-R 60

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           S     IE IQD VE  L+ S   K  R Y+ YRE+   +R
Sbjct: 61  SDHEPSIERIQDIVEQVLISSNFIKTARSYIAYREKHKVLR 101


>gi|258404206|ref|YP_003196948.1| anaerobic ribonucleoside triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796433|gb|ACV67370.1| anaerobic ribonucleoside-triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
          Length = 697

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 11/102 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + ++   +I  AI+KA  A           V+D +  L  +   ++ Q  +  
Sbjct: 20  IRKRDGRLETWALDRIGEAILKALKASG---------VKDPL--LANRLARKVEQKLEGI 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                E +QD VE  LM+S  +++ R Y++YRE+R  +R+ Q
Sbjct: 69  ETPEQEQVQDMVELVLMESRLYQVARRYIVYREKRRQLRSQQ 110


>gi|66391367|ref|YP_238600.1| ORF118 [Staphylococcus phage Twort]
 gi|62637297|gb|AAX92408.1| ORF118 [Staphylococcus phage Twort]
          Length = 108

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA+++D   +I +++  QK +DQA S  LY++ E    KL  +Y  AW  GLK+ YY RS
Sbjct: 36  TAYKLDNKRIINTSAVIQKHVDQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRS 95

Query: 906 RSATSVE 912
           ++   +E
Sbjct: 96  QTLKVIE 102


>gi|76787167|ref|YP_329761.1| ATP cone domain-containing protein [Streptococcus agalactiae A909]
 gi|77409851|ref|ZP_00786486.1| Unknown [Streptococcus agalactiae COH1]
 gi|77410524|ref|ZP_00786885.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77415022|ref|ZP_00791098.1| Unknown [Streptococcus agalactiae 515]
 gi|76562224|gb|ABA44808.1| ATP cone domain protein [Streptococcus agalactiae A909]
 gi|77158928|gb|EAO70163.1| Unknown [Streptococcus agalactiae 515]
 gi|77163472|gb|EAO74422.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77171541|gb|EAO74775.1| Unknown [Streptococcus agalactiae COH1]
          Length = 112

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +Q+IKR+G +  FDP KI +AI+KA   V    E      +   + +I +L +  V R  
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLEDAQVER-- 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 59  --------PTINMIQSLVENRLLDAGYIHIAEHYISYRLQR 91


>gi|77407156|ref|ZP_00784145.1| Unknown [Streptococcus agalactiae H36B]
 gi|77174233|gb|EAO77113.1| Unknown [Streptococcus agalactiae H36B]
          Length = 112

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +Q+IKR+G +  FDP KI +AI+KA   V    E      +   + +I +L +  V R  
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRZDLAQVTKKVILDLEDAQVER-- 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 59  --------PTINMIQSLVENRLLDAGYIHIAEHYISYRLQR 91


>gi|317407422|gb|EFV87384.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans C54]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 9/101 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V +FD  KI+ AI  A     G+G        D+ + LT   +  L      
Sbjct: 5   HILKRDGRVVAFDRDKIAAAIAAA-----GRGTGELD--ADVAQALTGAVIEALAAEGN- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +   +E IQ+QVE +L+++G+ +  R Y++YRE+ + +RA
Sbjct: 57  -VCPGVETIQNQVEETLVKAGYWRTARAYIVYREQHARLRA 96


>gi|317152686|ref|YP_004120734.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942937|gb|ADU61988.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 686

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+IKR+G + ++   +I  AI KA   ++G G    I+   +   L  +   +L   + 
Sbjct: 3   TQIIKRDGRIETWSTKRIGVAIFKA---LKGSG----IKDPMLADRLAGKVEAKLADMDT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                  E +QD V+  LM++  +K+   Y+LYRE+R ++R
Sbjct: 56  P----EQEQVQDMVQQVLMEARLYKVAERYILYREKRRELR 92


>gi|283832328|ref|ZP_06352069.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071975|gb|EFE10084.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 97

 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I ++  LI
Sbjct: 11  DGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLI 70

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTV 236
            +E P+Y  + AR  +  LR++ L  V
Sbjct: 71  SREAPDYQYLAARLAIFHLRKKSLRRV 97


>gi|302873254|ref|YP_003841887.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|307688579|ref|ZP_07631025.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|302576111|gb|ADL50123.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
          Length = 703

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+KR+G    F+  KI++AI ++   +  + K +      Q II ++ E+ +        
Sbjct: 4   VVKRDGRKVKFNSDKITKAIKRSSEELGYDLKESEAIDLTQGIITSIEEEDLEE------ 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E IQ+ VE  L + G+  I++ Y  YR ER+ VR  +S
Sbjct: 58  ----VTVEQIQNFVEKVLTEKGYTNISKSYSAYRNERTRVRELKS 98


>gi|225163579|ref|ZP_03725888.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
 gi|224801814|gb|EEG20101.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
          Length = 748

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++D+     +A P+L          VQV KR+G +  FD  +I+RA+ +A  A      
Sbjct: 8   PAQDLAAFLRNAAPTLP---------VQVRKRDGRLVPFDAKRITRALSRAGTATGEFDD 58

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + + R+   + NL   TV        +     +E +QD +E  L+ S   K  R  ++YR
Sbjct: 59  AMAHRLTLRVINLLLATV--------ADTTPTVEQVQDVIEEFLLDSPFRKTARALIVYR 110

Query: 123 EERSDVR 129
           ++   +R
Sbjct: 111 DQHKRLR 117


>gi|53714977|ref|YP_100969.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60682944|ref|YP_213088.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis NCTC 9343]
 gi|253566075|ref|ZP_04843529.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|265766824|ref|ZP_06094653.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|52217842|dbj|BAD50435.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60494378|emb|CAH09174.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis NCTC 9343]
 gi|251945179|gb|EES85617.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|263253201|gb|EEZ24677.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|301164410|emb|CBW23968.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis 638R]
          Length = 797

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A    G +     Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVSKAFSAT---GINDE---QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDKKTQMK 101


>gi|225351560|ref|ZP_03742583.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157904|gb|EEG71187.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 799

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           V V KR+G V  FDP  I  A+  AF  ++ K G      ++DI   +  +   R   +N
Sbjct: 20  VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEEQLIRDIANQVEAEIKDR---YN 76

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 77  GPA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116


>gi|212715440|ref|ZP_03323568.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661615|gb|EEB22190.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
          Length = 799

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           V V KR+G V  FDP  I  A+  AF  ++ K G      ++DI   +  +   R   +N
Sbjct: 20  VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEEQLIRDIANQVEAEIKDR---YN 76

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 77  GPA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116


>gi|194397878|ref|YP_002036904.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae G54]
 gi|194357545|gb|ACF55993.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae G54]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALYKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|85540876|gb|ABC70823.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    N  
Sbjct: 11  WSALRPKIVKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPNVM 70

Query: 806 LVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           L+ +L    K +D  D   +  L+ H   +G  E  PD
Sbjct: 71  LLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFPD 104


>gi|182413606|ref|YP_001818672.1| ATP-cone domain-containing protein [Opitutus terrae PB90-1]
 gi|177840820|gb|ACB75072.1| ATP-cone domain protein [Opitutus terrae PB90-1]
          Length = 842

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI----IKNLTEQTVTRLLQH 86
           VIKR+G    FD SK++RA+  AF  V    A    R   +    +   T   V+R+   
Sbjct: 39  VIKRDGSKVRFDQSKVTRALALAFHEVRTDNAPNPYRDHLLACFGLDTETFNEVSRISGA 98

Query: 87  NKSALIVH--------IEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               L ++        IE +QD  E ++  +GH ++ R Y+LYR   ++ R A 
Sbjct: 99  VAQMLELYYRDGKHPSIEQVQDAAEKAIAAAGHWEVARAYMLYRARHAERRLAH 152


>gi|168188057|ref|ZP_02622692.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294101|gb|EDS76234.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+ ++I  AI  A    +          Q I K+L+      + + NK  
Sbjct: 5   VIKRDGREVEFNINRIVNAIELAMKDTK----------QGIEKDLSVHIANDISEINKDK 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           + V  E+IQD VE  LM S    + +EY+ YR ER+  R ++S+
Sbjct: 55  ITV--EEIQDLVEDKLMDS-RKDVAKEYIKYRNERTKARDSKSN 95


>gi|168492156|ref|ZP_02716299.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573603|gb|EDT94131.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLDDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  +++  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYELAEEYITYRTQRDFERS 109


>gi|149017891|ref|ZP_01834350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147931455|gb|EDK82433.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD +KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVNKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|323143426|ref|ZP_08078111.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
 gi|322416831|gb|EFY07480.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
          Length = 755

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNK 88
           ++KR+G   SF+  KI+ AI KA ++V        +  QD  ++  LTE+ +  +   ++
Sbjct: 5   IVKRDGRKVSFNQQKIANAIKKALVSVH---PDDDVTPQDEELVVQLTEEVINAI--ESE 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              +  +E  QD +E  L++       + ++LYR++R++VR
Sbjct: 60  VTKVPTVEHTQDLIERILIKHDLADEAKNFILYRQQRTNVR 100


>gi|317056517|ref|YP_004104984.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448786|gb|ADU22350.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 723

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FDP KI  A+ KA +A E KG      + D+   +  +        NK
Sbjct: 1   MKIIKRNGAEEVFDPDKIINAVKKANIAGE-KGRISDEEIADVTDYVEYKC-------NK 52

Query: 89  SALIVHIEDIQDQVECSLMQSG 110
               V +E+IQD VE  LM  G
Sbjct: 53  LGRAVTVEEIQDMVENQLMAKG 74


>gi|238750152|ref|ZP_04611655.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
 gi|238711696|gb|EEQ03911.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
          Length = 712

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNKS 89
           VIKR+G    FD  +I  A+ +A +AV             ++      TV R++ Q  ++
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAV------------GVVDTDYCATVARVVAQTMEN 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I DIQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  QAKVDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|37528320|ref|NP_931665.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787758|emb|CAE16871.1| Anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 712

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+ +A  AV        I+V   +     Q++    Q     
Sbjct: 5   VIKRDGRQVPFDETRIRDAVKRATSAVGMTDDEYCIQVASAVT----QSMADYRQ----- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V ++DIQ+ VE  L+ + H  +   Y+ YR +R  VR   S
Sbjct: 56  --VDVQDIQNAVEHQLIANKHDHLVHRYIQYRHDRDTVRELHS 96


>gi|117921044|ref|YP_870236.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           ANA-3]
 gi|117613376|gb|ABK48830.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           ANA-3]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++    + V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVR----ERVANLAE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATS 95


>gi|237649729|ref|ZP_04523981.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821427|ref|ZP_04597272.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK----NLTEQTVTRLLQH 86
           V KR+G    FD  KI +A+ KA        A + I V  +++    +LTE+ +T +  H
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA--------ADKVIDVTPLVEKRLNDLTERIITEI--H 65

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++    + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 66  SRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|222823093|ref|YP_002574666.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
 gi|222538314|gb|ACM63415.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
          Length = 759

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 12/100 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFM-AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +IKR+    +FD  KI  AI KA + +++ K  +      D +  L ++ V  L + +  
Sbjct: 6   IIKRDKSQVAFDIFKIKNAIFKANINSIDEKLNN------DFLDKLCDEVVALLDEKH-- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              + +E IQD+VE  L+++      + Y+LYR++R+ +R
Sbjct: 58  ---IQVEQIQDKVEEVLIKNALVNTAKSYILYRQKRTQIR 94


>gi|85540872|gb|ABC70821.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540874|gb|ABC70822.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540878|gb|ABC70824.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    N  
Sbjct: 11  WSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPNVM 70

Query: 806 LVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           L+ +L    K +D  D   +  L+ H   +G  E  PD
Sbjct: 71  LLRDLGSVFKGKDYTDA--LEKLERHKWVVG--EAFPD 104


>gi|114048003|ref|YP_738553.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-7]
 gi|113889445|gb|ABI43496.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           MR-7]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++    + V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVR----ERVANLAE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATS 95


>gi|307720177|ref|YP_003891317.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978270|gb|ADN08305.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 702

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF++                 +  E    +++Q   + 
Sbjct: 5   ILKRDGSYKQFFSYKIEDAIKKAFLSEH--------------VDFDETVYIKVIQRLDAK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            +V +EDIQD +E  L ++ +  + R ++LYR
Sbjct: 51  RVVAVEDIQDIIEQELFKAKYFDVMRSFMLYR 82


>gi|326790793|ref|YP_004308614.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541557|gb|ADZ83416.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +F+ +KI  AI+++         ++++ V   I ++T +   R+   +  +
Sbjct: 5   VIKRDGRKVTFNTTKIENAILRS---------AKNVEVDIPISDITSKVTGRI--QDLYS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD +E +LM      +   Y  YR+ER+ +R  +S
Sbjct: 54  YEITVEQIQDVIEDTLMDLQLEALKNSYANYRKERTRIRDLKS 96


>gi|328943623|ref|ZP_08241088.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
 gi|327491592|gb|EGF23366.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
          Length = 740

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 21/101 (20%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV-------EGKGASRSIRVQDIIKNLTEQTVT 81
           +++IKRNG    F+  KI  AI  A   V       E +    S+ V+D+ KN    TVT
Sbjct: 1   MKIIKRNGSEVEFNLHKIINAISAANKEVPEDERLTEREITFASLNVEDLCKN-AGHTVT 59

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                        +E+IQD VE  +M   H  + R+Y++YR
Sbjct: 60  -------------VEEIQDMVEDQIMALNHFSVARKYIIYR 87


>gi|113970776|ref|YP_734569.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-4]
 gi|113885460|gb|ABI39512.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella sp.
           MR-4]
          Length = 705

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++    + V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVR----ERVANLAE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATS 95


>gi|182420124|ref|ZP_02951358.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237669565|ref|ZP_04529545.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376161|gb|EDT73748.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237655009|gb|EEP52569.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 702

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KI++AI  +   +       +++  +++  + + T    +++ KS 
Sbjct: 4   VVKRDGREVEFNSDKIAQAIKGSASEI-----GLTLKESEVLTTVAKVTDYIEIEYKKS- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQ+ VE +L   GH  I   Y  YR+ER+ VR  +S
Sbjct: 58  --ITVEQIQNFVERALQNQGHIDIAVAYSTYRKERTKVREIKS 98


>gi|307126423|ref|YP_003878454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|306483485|gb|ADM90354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|332076649|gb|EGI87111.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17545]
          Length = 735

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|224373779|ref|YP_002608151.1| anaerobic ribonucleoside triphosphate reductase [Nautilia
           profundicola AmH]
 gi|223589780|gb|ACM93516.1| anaerobic ribonucleoside-triphosphate reductase [Nautilia
           profundicola AmH]
          Length = 703

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 16/94 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V ++ P KI  AI KAF   E    S    V +++IK +            +
Sbjct: 3   KVIKRDGSVQNYFPYKIEDAIKKAF---EATNVSYDPHVFEEVIKQI------------Q 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              +  +E IQD +E SL + G+  + + ++LYR
Sbjct: 48  KIEMPEVEYIQDLIEHSLYKHGYFDVMKNFMLYR 81


>gi|238783484|ref|ZP_04627506.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
 gi|238715539|gb|EEQ07529.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
          Length = 712

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|329117224|ref|ZP_08245941.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
 gi|326907629|gb|EGE54543.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
          Length = 112

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 12/100 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLLQH 86
           +Q+IKR+G V  F+P KI +AI+K         A+R++ V D    +NL + T   +L  
Sbjct: 1   MQIIKRDGQVAEFNPDKIYQAIIK---------AARTVYVIDETWRQNLAQVTKKVVLDL 51

Query: 87  NKSAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            ++ +    I  IQ  VE  LM +G   +   Y+ YR +R
Sbjct: 52  EEAKVEKPTINMIQSLVENRLMDAGFINVAEHYISYRLQR 91


>gi|149194704|ref|ZP_01871799.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
 gi|149135127|gb|EDM23608.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
          Length = 698

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G + ++ P KI  AI KAF A + +              L  + V  LL   K 
Sbjct: 3   KVIKRDGRIDNYVPYKIEEAIKKAFKATKVE-----------YDPLVYEEVINLL---KK 48

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                +E IQD +E SL + G+  + + ++LYR
Sbjct: 49  VDTPEVEFIQDLIEKSLYKHGYFDVMKNFMLYR 81


>gi|29566069|ref|NP_817639.1| gp50 [Mycobacterium phage Bxz2]
 gi|34925222|sp|Q857H2|VG50_BPMB2 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|29424794|gb|AAN01804.1| gp50 [Mycobacterium phage Bxz2]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 148/400 (37%), Gaps = 97/400 (24%)

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ----GGKRKGAVCAYLETWHID 458
           D + VR  GA +    G + G +P  ++  D    +++    GG+  G   A +E  H  
Sbjct: 197 DVSRVRQFGAKLKTFGGTASGPLPLARMLIDVCEILSEIATEGGQLTG--IAAMEIDHAI 254

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWI-PDLF-MKRVTQNAG--WTLFSPDEVSDLHDLY 514
            +  +          RR+  M+  +W  P ++   R+ Q+ G  WT     EV D     
Sbjct: 255 AQCVV------AGGVRRSARMSMMHWKDPQVYEFLRIKQDTGSHWTTNISLEVDD----- 303

Query: 515 GKEFEIAYE-NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             EF +A E  +    +R             + R++   +   G P        N+  P 
Sbjct: 304 --EFWVAVEEGWAGPNNR-------------ILRELTEGMVANGEPGFWNSSLSNVGEPN 348

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVL 632
           + V     +N C EITL    E    CNLG +NL A    N  +D   L    R   R L
Sbjct: 349 EVV----CTNPCGEITL----EPWEPCNLGHVNLAAFAHGNGSYDITGLYRAHRLVTRFL 400

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +     K+++    +R IG+G +G  S L L    Y+        +E  +++  
Sbjct: 401 MRAT-FSPVADPKSREVLDRNRRIGVGHLGVASFLALCGWKYSEAR----TNEEFKWL-L 454

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            +++  V+ A  + A+         Q   P+                         +KKR
Sbjct: 455 RSLAEEVDHAATQFAH---------QLRIPV------------------------PVKKR 481

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        +APT TIA + GVS+ I P +   +++
Sbjct: 482 T------------VAPTGTIAKMPGVSEGIHPIFSRYFIR 509


>gi|301793476|emb|CBW35849.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV104]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|148996624|ref|ZP_01824342.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168576370|ref|ZP_02722253.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|307066880|ref|YP_003875846.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|147757199|gb|EDK64238.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183577900|gb|EDT98428.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|306408417|gb|ADM83844.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|332204211|gb|EGJ18276.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47901]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|225855968|ref|YP_002737479.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae P1031]
 gi|225726017|gb|ACO21869.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae P1031]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|149005952|ref|ZP_01829681.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298502017|ref|YP_003723957.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147762308|gb|EDK69269.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298237612|gb|ADI68743.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|117620502|ref|YP_855772.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561909|gb|ABK38857.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 705

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVNQASPA-----------LAERIAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+ 
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARG 96


>gi|313676821|ref|YP_004054817.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
 gi|312943519|gb|ADR22709.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNKS 89
           VIKRNG        KI  AI KAF +V   G    + + + +++ L E+T          
Sbjct: 5   VIKRNGEYQPLKHYKIEDAIKKAFKSV---GVEYDVIILKSVLEKLEEKTTWA------- 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
                +E+IQD +E  L    + K+ R ++LYR  R   R  +   K D 
Sbjct: 55  -----VEEIQDIIELQLYHYHYFKVMRSFMLYRHTRKLQRNQKKGIKHDT 99


>gi|148987939|ref|ZP_01819402.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926403|gb|EDK77476.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|238799269|ref|ZP_04642714.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
 gi|238716873|gb|EEQ08744.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
          Length = 712

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|148983601|ref|ZP_01816920.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|148992779|ref|ZP_01822422.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|149011071|ref|ZP_01832376.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|168483839|ref|ZP_02708791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486030|ref|ZP_02710538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489680|ref|ZP_02713879.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|168493896|ref|ZP_02718039.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|169832955|ref|YP_001693735.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231107|ref|YP_002510259.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225853809|ref|YP_002735321.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225858057|ref|YP_002739567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225860244|ref|YP_002741753.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229095|ref|ZP_06962776.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255981|ref|ZP_06979567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|303259255|ref|ZP_07345233.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261010|ref|ZP_07346959.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263338|ref|ZP_07349261.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|303265503|ref|ZP_07351403.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|303267939|ref|ZP_07353741.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|147764707|gb|EDK71637.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147923748|gb|EDK74860.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147928505|gb|EDK79520.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995457|gb|ACA36069.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042826|gb|EDT50872.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570916|gb|EDT91444.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571822|gb|EDT92350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|183576223|gb|EDT96751.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|220673567|emb|CAR68053.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225721134|gb|ACO16988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225723312|gb|ACO19165.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225727716|gb|ACO23567.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|301799352|emb|CBW31887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae OXC141]
 gi|301801147|emb|CBW33820.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV200]
 gi|302637847|gb|EFL68333.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639673|gb|EFL70130.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642635|gb|EFL72980.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|302644943|gb|EFL75190.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|302647111|gb|EFL77335.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|327390622|gb|EGE88962.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA04375]
 gi|332075868|gb|EGI86335.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17570]
 gi|332077504|gb|EGI87965.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41301]
 gi|332203368|gb|EGJ17435.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47368]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|182683182|ref|YP_001834929.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
 gi|182628516|gb|ACB89464.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|260881448|ref|ZP_05893445.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260848801|gb|EEX68808.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    ++  KI  AI  A    +G G + S +  D + +  E  +       K  
Sbjct: 6   VTKRSGHTVPYNREKIYHAIAGA--NADG-GNTMSEKDVDEVTSQVEWDI-------KDR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             V +E+IQD VE  LM+   + I ++Y+ YR++ ++ RAAQ H
Sbjct: 56  DNVSVEEIQDIVEQELMKYDFYDIAKKYITYRQKHAERRAAQKH 99


>gi|261337705|ref|ZP_05965589.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277150|gb|EFA23004.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
          Length = 798

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           V V KR+G +  FDP  I  A+  AF  ++ + G      ++DI K +  +   R   +N
Sbjct: 20  VLVEKRDGRIVDFDPINIVVAVKSAFDDLDKEVGPQEEGMIRDIAKQVEGEIKAR---YN 76

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             A    IEDIQ+ VE +L++   + + R Y  YR  +   RA
Sbjct: 77  GPA---KIEDIQNLVEHALIEDHLYDVARTYTNYRLNKDIERA 116


>gi|307704058|ref|ZP_07640988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307622388|gb|EFO01395.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|307711059|ref|ZP_07647481.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307617021|gb|EFN96199.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|224282538|ref|ZP_03645860.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310286999|ref|YP_003938257.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|311063874|ref|YP_003970599.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Bifidobacterium bifidum PRL2010]
 gi|313139692|ref|ZP_07801885.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|309250935|gb|ADO52683.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|310866193|gb|ADP35562.1| NrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum PRL2010]
 gi|313132202|gb|EFR49819.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 794

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           V V KR+G V  FDP  I  A+  AF  ++ +        + +I+   +Q    + + +N
Sbjct: 16  VLVEKRDGRVVDFDPINIISAVKSAFADLDKQVGPEE---EKLIRGFADQIEGEITERYN 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
             A    IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A      + 
Sbjct: 73  GPA---KIEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA----VSRF 124

Query: 148 MMDDGTLISFNSKR 161
           +  D TLI  N+ +
Sbjct: 125 INQDPTLIHENANK 138


>gi|307708055|ref|ZP_07644523.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
 gi|307615840|gb|EFN95045.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|289177458|gb|ADC84704.1| Anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 824

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V V KR+G V  FDP  I  A+  AF  ++ +   +  R+   I N  E  +    ++N 
Sbjct: 46  VLVEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEERMILDIANQIEGEIRE--RYNG 103

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    IEDIQ+ VE +L++   +++ R Y  YR  +   RA
Sbjct: 104 PA---KIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRA 142


>gi|183602101|ref|ZP_02963469.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683013|ref|YP_002469396.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191333|ref|YP_002968727.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196739|ref|YP_002970294.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218594|gb|EDT89237.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620663|gb|ACL28820.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249725|gb|ACS46665.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251293|gb|ACS48232.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794326|gb|ADG33861.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 808

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V V KR+G V  FDP  I  A+  AF  ++ +   +  R+   I N  E  +    ++N 
Sbjct: 30  VLVEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEERMILDIANQIEGEIRE--RYNG 87

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    IEDIQ+ VE +L++   +++ R Y  YR  +   RA
Sbjct: 88  PA---KIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRA 126


>gi|294782760|ref|ZP_06748086.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481401|gb|EFG29176.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
          Length = 728

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F+      ASR   ++     L E+  T++      
Sbjct: 3   RVIKRDGSVIEFDKKRIINAISKTFIQ-----ASREPNMK-----LIEKIATQV--EELP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + ++ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 51  SKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIR 90


>gi|289168739|ref|YP_003447008.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
 gi|288908306|emb|CBJ23148.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|332202118|gb|EGJ16187.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41317]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLDDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|319940096|ref|ZP_08014450.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
 gi|319810810|gb|EFW07137.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
          Length = 736

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 24  EKIKG---VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           E ++G   + V KR+G   +FD  KI +A++KA   V         +++ I   +  + +
Sbjct: 7   ETVQGFADIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVI 66

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +R          V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 67  SRF------PAGVKIYEIQNIVEHELLNANEYAIAESYITYRTQRDFARS 110


>gi|307709905|ref|ZP_07646352.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|307619276|gb|EFN98405.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 735

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  KGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|145298237|ref|YP_001141078.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851009|gb|ABO89330.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 705

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVSQANPT-----------LGERVAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+ 
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARG 96


>gi|322377235|ref|ZP_08051727.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
 gi|321281948|gb|EFX58956.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
          Length = 737

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  KGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|242280970|ref|YP_002993099.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123864|gb|ACS81560.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + S+   +IS AI KA  A         I+   + K L  +   +L   +  
Sbjct: 4   QILKRDGCLESWSTERISEAIFKALKA-------SGIKDPLLSKRLGRKVEEKLADVD-- 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +   E +QD V+  LM++  + +   Y++YRE+R ++R
Sbjct: 55  --VPEQEMVQDMVQLVLMENRLYSVAERYIIYREKRRELR 92


>gi|66354484|gb|AAY44877.1| ribonucleotide reductase large subunit [Tortoise herpesvirus 2]
          Length = 125

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ ++   G+ NS  +A+ PT + + I   S+   P + NLY K + +G+    N  
Sbjct: 17  WDVLRPKIIEHGLYNSQFIALMPTVSSSQITESSEGFYPVFTNLYSKLSTNGETIKPNVL 76

Query: 806 LVNEL 810
           L+ EL
Sbjct: 77  LLREL 81


>gi|150004213|ref|YP_001298957.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932637|gb|ABR39335.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR+G    F  SKI  AI KAF A         I  +D +I  +T + ++  +     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHA-------SGIDNEDKLIAEITMRVISNFV----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 56  SPTISVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDRKTQMK 101


>gi|254884769|ref|ZP_05257479.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294774982|ref|ZP_06740512.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|319644168|ref|ZP_07998693.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
 gi|254837562|gb|EET17871.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294451191|gb|EFG19661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|317384290|gb|EFV65261.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR+G    F  SKI  AI KAF A         I  +D +I  +T + ++  +     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHA-------SGIDNEDKLIAEITMRVISNFV----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 56  SPTISVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDRKTQMK 101


>gi|319947078|ref|ZP_08021312.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|322389596|ref|ZP_08063145.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
 gi|319747126|gb|EFV99385.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|321143722|gb|EFX39151.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
          Length = 118

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V        +   D+ +NL + T   ++   +
Sbjct: 7   MEVIKRSGEVVEFDPDKIYQAVLKAAQTV-------YVLTDDLRQNLAQVTKKVVMDLEE 59

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + +    I  IQ  VE  L+ +G+  I   Y+ YR +R
Sbjct: 60  AKVERATISMIQSMVEHRLLGAGYITIAEHYISYRLQR 97


>gi|237723711|ref|ZP_04554192.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D4]
 gi|265756835|ref|ZP_06090823.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|229437922|gb|EEO47999.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides dorei
           5_1_36/D4]
 gi|263233621|gb|EEZ19241.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR+G    F  SKI  AI KAF A         I  +D +I  +T + ++  +     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHA-------SGIDNEDKLIAEITMRVISNFV----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 56  SPTISVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDRKTQMK 101


>gi|195978076|ref|YP_002123320.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225868594|ref|YP_002744542.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225870449|ref|YP_002746396.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|195974781|gb|ACG62307.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225699853|emb|CAW93719.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|225701870|emb|CAW99344.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
          Length = 112

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 16/114 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-----IKNLTEQTVTRL 83
           +Q+IKR+G +  FDP KI +A++K         A+R++ V D      +  +T++ V  L
Sbjct: 1   MQIIKRDGQLADFDPDKIYQALIK---------AARTVYVIDDSWRQHLAQVTKKVVIDL 51

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            +       +++  IQ  VE  L+ +G+  I   Y+ YR +R   R     S S
Sbjct: 52  EEVQAERPTINM--IQSLVENRLIDAGYMTIAEHYIAYRLQRDLERNGYGDSIS 103


>gi|237708180|ref|ZP_04538661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
 gi|229457733|gb|EEO63454.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR+G    F  SKI  AI KAF A         I  +D +I  +T + ++  +     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHA-------SGIDNEDKLIAEITMRVISNFV----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 56  SPTISVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDRKTQMK 101


>gi|212690794|ref|ZP_03298922.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
 gi|212666671|gb|EEB27243.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
          Length = 758

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           +IKR+G    F  SKI  AI KAF A         I  +D +I  +T + ++  +     
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHA-------SGIDNEDKLIAEITMRVISNFV----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 56  SPTISVEEIQDLVEKELMKV-RPEVAKKYIIYREWRNTERDRKTQMK 101


>gi|150014960|ref|YP_001307214.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901425|gb|ABR32258.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV---QDIIKNLTEQTVTRLLQHN 87
           V+KR+G    F+  KI++AI         KG++  I +   +  + +   + +T + +  
Sbjct: 4   VVKRDGREVEFNSDKIAQAI---------KGSASEIGLNLKESQVLDTVHKVITYIEEEY 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           K  + V  E IQ+ VE +L   GH  I   Y  YR ER+ VR  +S
Sbjct: 55  KKTITV--EQIQNFVEKALRNEGHKDIAVAYSAYRRERTKVRDIKS 98


>gi|330830675|ref|YP_004393627.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas veronii
           B565]
 gi|328805811|gb|AEB51010.1| Anaerobic ribonucleoside-triphosphate reductase, putative
           [Aeromonas veronii B565]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     + + R+ + +    E             
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVSRAAEAVNQANPALASRIANAVSQELEGRGE--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+ 
Sbjct: 56  --VDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARG 96


>gi|16799382|ref|NP_469650.1| anaerobic ribonucleoside triphosphate reductase [Listeria innocua
           Clip11262]
 gi|16412734|emb|CAC95538.1| lin0305 [Listeria innocua Clip11262]
          Length = 716

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+E       +  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIE-------LEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKTDMT--IDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|126173897|ref|YP_001050046.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS155]
 gi|125997102|gb|ABN61177.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           baltica OS155]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S+ ++D      +     Q+V  L +
Sbjct: 4   VIKRDGCRTPFDETRIRDAV---------NAAANSVGIEDGDYAATVAACISQSVATLTE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  -------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATS 95


>gi|217973855|ref|YP_002358606.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS223]
 gi|217498990|gb|ACK47183.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS223]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S+ ++D      +     Q+V  L +
Sbjct: 4   VIKRDGCRTPFDETRIRDAV---------NAAANSVGIEDGDYAATVAACISQSVATLTE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  -------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATS 95


>gi|85859088|ref|YP_461290.1| anaerobic ribonucleoside triphosphate reductase [Syntrophus
           aciditrophicus SB]
 gi|85722179|gb|ABC77122.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophus
           aciditrophicus SB]
          Length = 715

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FD  KI+RAI KA       G +       + + LT + V  L +    
Sbjct: 22  EIKKRDGRLVKFDAEKITRAIAKA-------GDATGEFDYKVARKLTIK-VMSLAEKIFD 73

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           + I+ +E+IQD VE  L+ S + +  + Y++YR++ + +R   +  + D
Sbjct: 74  SRIISVEEIQDIVEEVLL-STYSRTAKAYIIYRDQHARLREITNRMEVD 121


>gi|328944724|gb|EGG38885.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1087]
          Length = 732

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ESAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|160874804|ref|YP_001554120.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS195]
 gi|160860326|gb|ABX48860.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS195]
 gi|315267042|gb|ADT93895.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS678]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S+ ++D      +     Q+V  L +
Sbjct: 4   VIKRDGCRTPFDETRIRDAV---------NAAANSVGIEDGDYAATVAACISQSVATLTE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  -------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATS 95


>gi|331267142|ref|YP_004326772.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
 gi|326683814|emb|CBZ01432.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
          Length = 735

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDLTPLVEKRLNGLVERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|153000177|ref|YP_001365858.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS185]
 gi|151364795|gb|ABS07795.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS185]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S+ ++D      +     Q+V  L +
Sbjct: 4   VIKRDGCRTPFDETRIRDAV---------NAAANSVGIEDGDYAATVAACISQSVATLTE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  -------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATS 95


>gi|260599405|ref|YP_003211976.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           turicensis z3032]
 gi|260218582|emb|CBA33838.1| Anaerobic ribonucleoside-triphosphate reductase [Cronobacter
           turicensis z3032]
          Length = 711

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+ ++I  AI++A  A     A     V +I        V+  +Q  + 
Sbjct: 4   HVVKRDGCKVPFNSARIHEAILRAAQAAGVDDADYCATVAEI--------VSSQMQGRRE 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q 
Sbjct: 56  ---VDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQG 96


>gi|304409768|ref|ZP_07391388.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|307304124|ref|ZP_07583877.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
 gi|304352286|gb|EFM16684.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|306913022|gb|EFN43445.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
          Length = 705

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S+ ++D      +     Q+V  L +
Sbjct: 4   VIKRDGCRTPFDETRIRDAV---------NAAANSVGIEDGDYAATVAACISQSVATLTE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I  +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  -------VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATS 95


>gi|306822273|ref|ZP_07455654.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|309802805|ref|ZP_07696907.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304554435|gb|EFM42341.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|308220558|gb|EFO76868.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V V KR+G V  FDP  I  A+  AF  ++ K   +  ++   I N  E  +    ++N 
Sbjct: 20  VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEEQMIRGIANQVEAEIKE--RYNG 77

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 78  PA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116


>gi|300718561|ref|YP_003743364.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
 gi|299064397|emb|CAX61517.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD ++I  AI         KGA+ +  ++D  +    +   ++ Q  +
Sbjct: 1   MRVIKRDGCSMPFDATRIGDAI---------KGAAHAAGIED--QGYCAEVTVQICQQLQ 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 50  QQDCLDIHDIQRAVENQLMAGRYPELARTYIEYRHDRDIAR 90


>gi|296875605|ref|ZP_06899676.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433402|gb|EFH19178.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 743

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A++KA   V    AS +  ++  ++ + ++ +  +L+   + 
Sbjct: 24  VEKRDGRRVQFDVEKIYKALLKATEEV----ASLTPVLEAKLEAIVDRVIAEILERFPNG 79

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 80  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 117


>gi|148658653|ref|YP_001278858.1| ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
 gi|148570763|gb|ABQ92908.1| Ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
          Length = 768

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P+ +    +IKR+G V  FD S+I  A+ + F +          R+ D       Q V  
Sbjct: 22  PDVVVPTMIIKRDGRVVPFDVSRIENAMARCFASFG--------RIPDTPIPELAQRVVN 73

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           ++          +E +QD VE  L  +G  +  + Y+LY
Sbjct: 74  IVAARLQGRPPTVEGVQDIVEMVLQAAGEFEAAKRYILY 112


>gi|125719012|ref|YP_001036145.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           sanguinis SK36]
 gi|125498929|gb|ABN45595.1| Ribonucleotide reductase, class III, anaerobic, putative
           [Streptococcus sanguinis SK36]
          Length = 731

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVTFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|327463474|gb|EGF09793.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1057]
          Length = 732

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|324989646|gb|EGC21590.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK353]
          Length = 731

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|251791307|ref|YP_003006028.1| anaerobic ribonucleoside triphosphate reductase [Dickeya zeae
           Ech1591]
 gi|247539928|gb|ACT08549.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya zeae
           Ech1591]
          Length = 712

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAAKAANVDDADYCATVAGAVA-----------QQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q 
Sbjct: 54  ARVDIREIQNAVENLLMSGKYKQLARTYIEYRHDRDVARERQG 96


>gi|213864875|ref|ZP_03386994.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 115

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++  LI ++ P+Y  + AR  +  LR++       +P    HH ++ +
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHHVVKMV 110


>gi|171742360|ref|ZP_02918167.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283456546|ref|YP_003361110.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium Bd1]
 gi|171277974|gb|EDT45635.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283103180|gb|ADB10286.1| nrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium dentium Bd1]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V V KR+G V  FDP  I  A+  AF  ++ K   +  ++   I N  E  +    ++N 
Sbjct: 20  VLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEEQMIRGIANQVEAEIKE--RYNG 77

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 78  PA---KIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116


>gi|50119334|ref|YP_048501.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609860|emb|CAG73294.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 712

 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V              + Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATV-----------ACAVAQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQD VE  LM   + K+ R Y+ YR +R   R
Sbjct: 54  SRVDIRDIQDAVENLLMSGNYKKLARTYIEYRHDRDIAR 92


>gi|325695345|gb|EGD37245.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK150]
          Length = 732

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|324992630|gb|EGC24551.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK405]
 gi|324995841|gb|EGC27752.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK678]
 gi|327460033|gb|EGF06372.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1]
 gi|327472179|gb|EGF17616.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK408]
 gi|327488623|gb|EGF20423.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1058]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|332363726|gb|EGJ41506.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK49]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|315280721|ref|ZP_07869539.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
 gi|313615632|gb|EFR88959.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
          Length = 603

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++   +VIKR+G   +FD  KI  A+  +  A+       S+  +  ++ +  + V+
Sbjct: 2   YVEQLNEQKVIKRDGRKANFDLIKIRNAVEASMKAI-------SLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKTDMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|323350681|ref|ZP_08086342.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
 gi|322123101|gb|EFX94792.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|332365289|gb|EGJ43052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1059]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|327467918|gb|EGF13408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK330]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|325688821|gb|EGD30829.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK115]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|157737486|ref|YP_001490169.1| anaerobic ribonucleoside triphosphate reductase [Arcobacter
           butzleri RM4018]
 gi|157699340|gb|ABV67500.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Arcobacter
           butzleri RM4018]
          Length = 704

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 14/94 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V ++KR+G   SF+  KI  AI KAF +V  K         DI           +L   K
Sbjct: 3   VDILKRDGSKQSFESYKIEDAIKKAFKSVNIK--------YDI------SVFFNVLFELK 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              +V +EDIQD +E  L ++ +  + + +++YR
Sbjct: 49  CKRVVAVEDIQDIIEKELYKARYFDVMKSFMIYR 82


>gi|210635440|ref|ZP_03298544.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
 gi|210158387|gb|EEA89358.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
          Length = 740

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A   V+        +V+   +N+ E+  T       
Sbjct: 1   MKIIKRSGSEVTFDLQKIINAINGANSEVKSGERLTDRQVRYAAENVAERCET------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +   V +E+IQD VE  LM     ++ R Y++YR
Sbjct: 54  AGHTVSVEEIQDMVEDELMALDRFEVARHYIIYR 87


>gi|325697285|gb|EGD39171.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK160]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|325686730|gb|EGD28756.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK72]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|307702678|ref|ZP_07639630.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|307623794|gb|EFO02779.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
          Length = 735

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|257876806|ref|ZP_05656459.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257810972|gb|EEV39792.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLL 84
           ++ ++++KR+G +  FD  KI  A++KA   V G+ +     ++ +I+ ++  +   R  
Sbjct: 17  LRQLKIVKRDGRLVDFDDQKIYDALVKALRKVNGELSPIDHEKITEIVDSVDHEIAERFR 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 77  TN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 116


>gi|322375044|ref|ZP_08049558.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
 gi|321280544|gb|EFX57583.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|315612325|ref|ZP_07887238.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
 gi|315315306|gb|EFU63345.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|293364355|ref|ZP_06611081.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
 gi|291317201|gb|EFE57628.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|315637212|ref|ZP_07892432.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
 gi|315478484|gb|EFU69197.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
          Length = 704

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 14/94 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V ++KR+G   SF+  KI  AI KAF +V  K         DI           +L   K
Sbjct: 3   VDILKRDGSKQSFESYKIEDAIKKAFKSVNIK--------YDI------SVFFNVLFELK 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              +V +EDIQD +E  L ++ +  + + +++YR
Sbjct: 49  CKRVVAVEDIQDIIEKELYKARYFDVMKSFMIYR 82


>gi|123440857|ref|YP_001004848.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087818|emb|CAL10604.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|306828775|ref|ZP_07461967.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
 gi|304428953|gb|EFM32041.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDLTPLVEKRLNGLVERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|238787629|ref|ZP_04631427.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
 gi|238724416|gb|EEQ16058.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|238793046|ref|ZP_04636675.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
 gi|238727646|gb|EEQ19171.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|313620854|gb|EFR92063.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL S4-378]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+E       +  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIE-------LEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKTDMT--IDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|283768228|ref|ZP_06341141.1| ATP cone domain protein [Bulleidia extructa W1219]
 gi|283105105|gb|EFC06476.1| ATP cone domain protein [Bulleidia extructa W1219]
          Length = 511

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+  +T F+  KI  AI KAF      G+ +  R+   + +L         +    
Sbjct: 3   KVKKRDNSLTEFEMDKIKTAIKKAF-----HGSKK--RIHSSVLDLLAIRAVADFEDKMV 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             ++ +EDIQD VE  L + G+ ++ + Y+LY
Sbjct: 56  DDVISVEDIQDSVEHVLSECGYSEVAKAYILY 87


>gi|318607315|emb|CBY28813.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|167957220|ref|ZP_02544294.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 97

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETAL 202
           +K++  DGT  +F++ ++ M +  A  GL D  SK+  + SE    ++DG++   L  ++
Sbjct: 6   IKVVKRDGTSEAFDANKINMELIAAAEGLPDQISKVAQISSEVQLTLFDGITTEQLNESI 65

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE 226
           I ++   I+ +P++  + +R LL+
Sbjct: 66  INTALQNIKDDPDFDVIASRLLLK 89


>gi|145641095|ref|ZP_01796676.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274256|gb|EDK14121.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 108

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRRE 231
           ++  LI K+ P+Y  + AR  +  LR++
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKK 92


>gi|189500136|ref|YP_001959606.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
 gi|189495577|gb|ACE04125.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
          Length = 730

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++IKR+G V SF+  KI+ A+ +A  A            +     L+ Q V  L +  +
Sbjct: 11  AKIIKRDGKVVSFNREKITFALFRALRATGNPD-------RQYAAELSAQVVASL-EAKR 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +     +E+IQD VE  L ++      + Y++YR +  ++R A+
Sbjct: 63  AKEPPSVEEIQDVVEKVLFENCAFDAAKAYIIYRFQHGNMREAK 106


>gi|223986900|ref|ZP_03636877.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
 gi|223961156|gb|EEF65691.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
          Length = 811

 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    F   KI   I K F  V    +  ++R          + + R L   +
Sbjct: 57  IEVIKRDGRTVRFHKEKIQNVIEKGFANVGTHCSEENVR----------KVLNRALNQIE 106

Query: 89  SALI--VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +A +  + IE IQDQVE + ++ G  +  + +  YR++R+  R
Sbjct: 107 AANLPQIEIEKIQDQVEEAFVEEGFIEEYKAFKNYRQKRAVAR 149


>gi|255025356|ref|ZP_05297342.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-003]
          Length = 716

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|311114309|ref|YP_003985530.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
 gi|310945803|gb|ADP38507.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
          Length = 817

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           VQV KR+G V  FD   I  AI  AF  +  + G      ++DI  ++  +   R   +N
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQEEQMIRDITDHIEAEIQDR---YN 95

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             A    IEDIQ  VE  L+++  +++ R Y  YR  R   RA
Sbjct: 96  GPA---KIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRA 135


>gi|254831898|ref|ZP_05236553.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 10403S]
 gi|284800577|ref|YP_003412442.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284993763|ref|YP_003415531.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
 gi|284056139|gb|ADB67080.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284059230|gb|ADB70169.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
          Length = 716

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|254828739|ref|ZP_05233426.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
 gi|258601145|gb|EEW14470.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
          Length = 716

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  A+         + + ++I ++D  +   E+ + 
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAV---------EASMKAINLED--ETFLEEILL 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            ++    +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 51  EVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|152991511|ref|YP_001357233.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
 gi|151423372|dbj|BAF70876.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
          Length = 707

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V SF P KI  AI  AF +V          +    K + E  + R+      A
Sbjct: 9   IIKRDGSVESFKPYKIEDAIKAAFDSV----------LVPYDKKVYEAVLIRISFDTVKA 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
               +E+IQD +E  L ++G+  + + ++ YR
Sbjct: 59  ----VEEIQDIIEYELHRAGYFDVMKSFITYR 86


>gi|306825992|ref|ZP_07459328.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431708|gb|EFM34688.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  KGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|47096368|ref|ZP_00233963.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224502427|ref|ZP_03670734.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL R2-561]
 gi|254900532|ref|ZP_05260456.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes J0161]
 gi|254913517|ref|ZP_05263529.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
 gi|254937902|ref|ZP_05269599.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|47015242|gb|EAL06180.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610511|gb|EEW23119.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|293591526|gb|EFF99860.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
          Length = 716

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|331268374|ref|YP_004394866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329124924|gb|AEB74869.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 700

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ----- 85
           ++KR+G    FD  KI+ AI         KG++      +I  NL E     + Q     
Sbjct: 1   MVKRDGRRVPFDSIKITNAI---------KGSA-----DEIAFNLKESEAIEITQKVIEQ 46

Query: 86  -HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             +K+   + +E+IQ+ VE  L  +G   I + Y  YR ER+ +R  +SH
Sbjct: 47  LEDKNCDEISVEEIQNIVESVLQANGCEVIWKTYSNYRRERTKIREKKSH 96


>gi|16802325|ref|NP_463810.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes EGD-e]
 gi|16409644|emb|CAD00806.1| lmo0279 [Listeria monocytogenes EGD-e]
 gi|323676613|emb|CBZ41775.1| class III anaerobic ribonucleoside-triphosphate reductase catalytic
           subunit [Listeria monocytogenes EGD-e]
          Length = 710

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   SFD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|313669387|ref|YP_004049814.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156584|gb|ADR35261.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 704

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    + P KI  AI KA+ +V+               ++ E  +T +L     
Sbjct: 6   RVIKRDGSSELYHPFKIEDAIRKAYESVQ--------------VSVNEDVITEILFQVMY 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             +  +E IQD +E  L +SG   + + ++ YR
Sbjct: 52  HSVFEVEKIQDLIEEELYKSGAFSVMKSFITYR 84


>gi|118474565|ref|YP_891231.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413791|gb|ABK82211.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 689

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 16/94 (17%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G +  F   KI  AI KA+ +               +K      + ++L   K
Sbjct: 1   MKIIKRDGSLQDFASYKIENAITKAYKSA--------------LKEPNTALIKKVLSEVK 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             +   +E+IQD +E +L  SG   + R ++LYR
Sbjct: 47  DKM--SVEEIQDIIEKALFDSGDFTVMRNFMLYR 78


>gi|213027740|ref|ZP_03342187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 136

 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I ++  LI
Sbjct: 11  DGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLI 70

Query: 211 EKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
            ++ P+Y  + AR  +  LR++       +P    HH ++ +
Sbjct: 71  SRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHHVVKMV 110


>gi|312866777|ref|ZP_07726990.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
 gi|311097560|gb|EFQ55791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
          Length = 739

 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A++KA   V         +++ I+  +  + + R   
Sbjct: 15  VPDIFVEKRDGRRVQFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERFPN 74

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 75  G------VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 113


>gi|325570716|ref|ZP_08146442.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
 gi|325156562|gb|EGC68742.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
          Length = 731

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLL 84
           ++ ++++KR+G +  FD  KI  A++KA   + G+ +     ++ +I+ ++  +   R  
Sbjct: 18  LRQLKIVKRDGRLVDFDDQKIYDALVKALRKINGELSPIDHEKITEIVDSVDHEIAERFR 77

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 78  TN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 117


>gi|313625297|gb|EFR95116.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL J1-023]
          Length = 196

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+E       +  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIE-------LEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKTDMT--IDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|257867913|ref|ZP_05647566.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257874242|ref|ZP_05653895.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257801996|gb|EEV30899.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257808406|gb|EEV37228.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 730

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLL 84
           ++ ++++KR+G +  FD  KI  A++KA   + G+ +     ++ +I+ ++  +   R  
Sbjct: 17  LRQLKIVKRDGRLVDFDDQKIYDALVKALRKINGELSPIDHEKITEIVDSVDHEIAERFR 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 77  TN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 116


>gi|288803351|ref|ZP_06408784.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
 gi|288334171|gb|EFC72613.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
          Length = 696

 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 14/81 (17%)

Query: 49  AIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108
           AI+KAF +V       ++    II NL  Q              + +EDIQ+QVE +LM+
Sbjct: 3   AILKAFESVNEPTDLGTL--SKIIANLNIQND------------IKVEDIQNQVELALMK 48

Query: 109 SGHHKITREYVLYREERSDVR 129
            G++++ + +++YR++ ++ R
Sbjct: 49  EGYYQVAKSFIVYRQQHTEDR 69


>gi|170718686|ref|YP_001783879.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           2336]
 gi|168826815|gb|ACA32186.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus somnus
           2336]
          Length = 708

 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV       +I+ +     + +     +  H +  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV-------NIQDEMFCHKIGQLVCDNIFAHYQKE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+
Sbjct: 59  --IDISHIQEIVENHLMASKYPQVARAYIEYRHERDLAREKRSN 100


>gi|25011136|ref|NP_735531.1| hypothetical protein gbs1085 [Streptococcus agalactiae NEM316]
 gi|76798073|ref|ZP_00780329.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|23095535|emb|CAD46744.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586578|gb|EAO63080.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|319745053|gb|EFV97380.1| ribonucleoside-diphosphate reductase [Streptococcus agalactiae ATCC
           13813]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV----EGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +Q+IKR+G +  FDP KI +AI+KA   V    E      +   + +I +L +  V R  
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLEDAQVER-- 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
                     I  IQ  VE  L+ +G+      Y+ YR +R
Sbjct: 59  --------PTINMIQSLVENRLLDAGYIHTAEHYISYRLQR 91


>gi|309799048|ref|ZP_07693301.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
 gi|308117283|gb|EFO54706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
          Length = 560

 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V         R+  +++ + E+  +R  Q     
Sbjct: 16  VEKRDGRRVVFDVEKIEKALHKAAEKVMDVTPLVEKRLSTLVERIVEEIHSRFPQG---- 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  --VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|322390437|ref|ZP_08063958.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
 gi|321142895|gb|EFX38352.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A++KA   V         +++ I+  +  + + R        
Sbjct: 24  VEKRDGRRVPFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERFPNG---- 79

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 80  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 117


>gi|242280417|ref|YP_002992546.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123311|gb|ACS81007.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 683

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q++KR+G + ++   +I++AI KA  A              I   L  + + R +++  
Sbjct: 3   TQIMKRDGRLETWSTERIAQAIFKALSA------------SGIKDPLMAKRMARKVEYKL 50

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + I   E +Q+ VE  LM S  H + ++++LYR+ R  +R
Sbjct: 51  EGVDIPEQEHVQNMVEEVLMDSRLHSVAKKFILYRDSRRRLR 92


>gi|113461609|ref|YP_719678.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           129PT]
 gi|112823652|gb|ABI25741.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Haemophilus
           somnus 129PT]
          Length = 708

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV       +I+ +     + +     +  H++  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV-------NIQDEMFCHKIGQLVCDDIFAHHQKE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+
Sbjct: 59  --IDISRIQEIVENHLMGSQYPQVARAYIEYRHERDLAREKRSN 100


>gi|291457375|ref|ZP_06596765.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
 gi|291381210|gb|EFE88728.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
          Length = 802

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   V V KR+G V  FDP  I  AI  AF  +  +          +I+   +Q    + 
Sbjct: 20  KASTVLVEKRDGRVVDFDPINIISAIKSAFGDLNKEVGPEE---DAMIRGFADQVEGEIK 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +  + A    IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A     
Sbjct: 77  E--RYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA----V 129

Query: 145 LKIMMDDGTLISFNSKR 161
            + +  D TLI  N+ +
Sbjct: 130 SRFINHDPTLIHENANK 146


>gi|153801436|ref|ZP_01956022.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
 gi|124123011|gb|EAY41754.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
          Length = 706

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLCDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|332360137|gb|EGJ37951.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1056]
          Length = 756

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R  ++ 
Sbjct: 38  AIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRFAKY- 96

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 97  -----VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 134


>gi|291536646|emb|CBL09758.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis M50/1]
 gi|291541014|emb|CBL14125.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis XB6B4]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+  +     ++ + 
Sbjct: 1   MKIIKRSGMEDTFDIKKIESAIRRANNSVIDYEKLTDKQIDEISKNV--EVACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S     +E+IQD VE  +M      + R Y+ YR ++  VR + S
Sbjct: 59  S-----VEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNS 98


>gi|312262459|gb|ADQ52754.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage PX29]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G +  FD S I  AI  +  ++        I       + TE  V +L+  + 
Sbjct: 1   MQVQKRDGRIVDFDQSFIETAISNSLQSI-------GITDPTFPHHATEAVVRKLIGRS- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +V I +IQ  VE +LM+S +  + R Y+ YR +R   R   S
Sbjct: 53  ---MVTIGEIQHVVEDTLMRSRYPAVARAYIEYRYDRDVARDLNS 94


>gi|262363220|gb|ACY59941.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           D106004]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|22124647|ref|NP_668070.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45440484|ref|NP_992023.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594871|ref|YP_069062.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808947|ref|YP_652863.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|108810799|ref|YP_646566.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|145600518|ref|YP_001164594.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|153949602|ref|YP_001402510.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997506|ref|ZP_02022606.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|162421738|ref|YP_001608327.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Angola]
 gi|165925838|ref|ZP_02221670.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936718|ref|ZP_02225285.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010082|ref|ZP_02230980.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214312|ref|ZP_02240347.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398618|ref|ZP_02304142.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420614|ref|ZP_02312367.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423681|ref|ZP_02315434.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469609|ref|ZP_02334313.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           FV-1]
 gi|170025906|ref|YP_001722411.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893881|ref|YP_001870993.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930468|ref|YP_002348343.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           CO92]
 gi|229839102|ref|ZP_04459261.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896590|ref|ZP_04511757.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|229899665|ref|ZP_04514806.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901001|ref|ZP_04516125.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|270489180|ref|ZP_06206254.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294505158|ref|YP_003569220.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|21957455|gb|AAM84321.1|AE013675_1 anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45435341|gb|AAS60900.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51588153|emb|CAH19759.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774447|gb|ABG16966.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Yersinia pestis
           Nepal516]
 gi|108780860|gb|ABG14918.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|115349079|emb|CAL22042.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CO92]
 gi|145212214|gb|ABP41621.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|149289143|gb|EDM39223.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|152961097|gb|ABS48558.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354553|gb|ABX88501.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Angola]
 gi|165915367|gb|EDR33977.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922450|gb|EDR39627.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990989|gb|EDR43290.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204544|gb|EDR49024.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961420|gb|EDR57441.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051122|gb|EDR62530.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057851|gb|EDR67597.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752440|gb|ACA69958.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696907|gb|ACC87536.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229682340|gb|EEO78432.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|229687157|gb|EEO79232.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695468|gb|EEO85515.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700368|gb|EEO88400.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|262367151|gb|ACY63708.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           D182038]
 gi|270337684|gb|EFA48461.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294355617|gb|ADE65958.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|320016657|gb|ADW00229.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|291532368|emb|CBL05481.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Megamonas hypermegale ART12/1]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR G +  F+  KI+ AI KA M    +  S+  ++  I  N     V + L++ K+ 
Sbjct: 5   IKKRTGDIVKFNAQKITDAIKKANMESIDETFSKE-QLSTITNN-----VIKALKNLKTP 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E IQD VE  L+        + Y+LYR E + +R A++
Sbjct: 59  ---GVEQIQDAVEKVLIAGNFASTAKAYILYRAEHTKLRQAKA 98


>gi|332365428|gb|EGJ43189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK355]
          Length = 732

 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD +KI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVAKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AKY------VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|149001693|ref|ZP_01826666.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760151|gb|EDK67140.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 185

 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  H++    
Sbjct: 18  KRDGRRVVFDVDKIDKALHKA----ADKVIDVTPLVEKRLNDLTERIITEI--HSRFPQG 71

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           + I +IQ+ VE  L+++  + +  EY+ YR +R
Sbjct: 72  IKIYEIQNIVEHELLEAKEYALAEEYITYRTQR 104


>gi|156740149|ref|YP_001430278.1| ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
 gi|156231477|gb|ABU56260.1| Ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P+ I    +IKR+G V  FD ++I  A+ + F +          R  D       Q V  
Sbjct: 22  PDVIVPTTIIKRDGRVVPFDVTRIENAMARCFASFG--------RTPDTPIPELAQRVVN 73

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           ++          +E +QD VE  L  +G  +  + Y+LY
Sbjct: 74  IVAAKSQGKPPTVEGVQDIVEMVLQAAGEFEAAKRYILY 112


>gi|297569531|ref|YP_003690875.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925446|gb|ADH86256.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++   +   D  P+ ++  P       + KR+  +  F   KI+ AI KA       G 
Sbjct: 5   PTQPQPQATTDHQPAASHTTPRSQLFSVIRKRDQRLVPFAAEKITNAIHKAGEVTGELGP 64

Query: 63  SRSIR----VQDIIKNLTEQTVTR--LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116
             + R    V  I +N   + + R      +++A +  +E+IQD VE  L+ S + K  +
Sbjct: 65  PEARRLTMQVLAIAQNFFGEQLNRSAPAAGDQAAAVPSVEEIQDLVEEVLLSSPYKKTAK 124

Query: 117 EYVLYREERSDVR 129
            Y+LYR++ + +R
Sbjct: 125 AYILYRDQHARIR 137


>gi|240146770|ref|ZP_04745371.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|257201054|gb|EEU99338.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+  +     ++ + 
Sbjct: 1   MKIIKRSGMEDTFDIKKIEAAIRRANNSVIDYEKLTDKQIDEISKNV--EVACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           S     +E+IQD VE  +M      + R Y+ YR ++  VR + S
Sbjct: 59  S-----VEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNS 98


>gi|255028153|ref|ZP_05300104.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes LO28]
          Length = 180

 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 15/110 (13%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQT 79
           + E++    VIKR+G   SFD  KI  A+         + + ++I ++D   ++ +  + 
Sbjct: 2   YVEQLNEQMVIKRDGRKASFDLIKIRNAV---------EASMKAINLEDETFLEEILLEV 52

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           V+ L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R
Sbjct: 53  VSELP--NKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHER 98


>gi|237742481|ref|ZP_04572962.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
 gi|229430129|gb|EEO40341.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
          Length = 728

 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|260582007|ref|ZP_05849802.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
 gi|260094897|gb|EEW78790.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
          Length = 707

 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRTEFEIQRIINAIKKAANAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|194337606|ref|YP_002019400.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310083|gb|ACF44783.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 719

 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G    FD  KI  A+ +A  AV   G +   +   I ++       R L+   +
Sbjct: 8   EMIKRDGRKVPFDAEKIVYAVFRALRAV---GKADRTKAAGIARD-----AIRELESAMN 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             +  +E++QD VE +L         + Y++YR +   +R A+
Sbjct: 60  GNVPSVEEMQDMVEKTLFLHREFDAAKAYIIYRHQHQYMRDAK 102


>gi|24374363|ref|NP_718406.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           oneidensis MR-1]
 gi|24348920|gb|AAN55850.1|AE015721_13 anaerobic ribonucleoside-triphosphate reductase [Shewanella
           oneidensis MR-1]
          Length = 705

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++          A+ S+ ++D     T          N + 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVI---------AAANSVGIEDTDYAATVAACVSARVANMAE 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + +H   +QD VE  LM+  +  + R Y+ YR +R   R A S
Sbjct: 55  VEIH--HLQDVVENLLMEGPYKSLARVYIEYRHDRDICRDATS 95


>gi|34763888|ref|ZP_00144791.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886336|gb|EAA23608.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 728

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|307129134|ref|YP_003881150.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
 gi|306526663|gb|ADM96593.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAAKAAGVDDADYCATVAGAVA-----------QQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q 
Sbjct: 54  TRVDIREIQNVVENLLMSGKYKQLARTYIEYRHDRDVARERQG 96


>gi|145633334|ref|ZP_01789065.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986180|gb|EDJ92770.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 108

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRRE 231
           ++  LI K+ P+Y  + AR  +  LR++
Sbjct: 65  AAADLISKDSPDYQYLAARLAIFHLRKK 92


>gi|294785007|ref|ZP_06750295.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
 gi|294486721|gb|EFG34083.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
          Length = 728

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             ++ +E IQD V   LM S    I   Y  YR  ++++R
Sbjct: 51  DKVLSVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIR 90


>gi|308235049|ref|ZP_07665786.1| anaerobic ribonucleoside triphosphate reductase [Gardnerella
           vaginalis ATCC 14018]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           VQV KR+G V  FD   I  AI  AF  +  + G      ++DI  ++  +   R   +N
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQEEQMIRDITDHIEAEIQDR---YN 95

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             A    IEDIQ  VE  L+++  +++ R Y  YR  R   RA
Sbjct: 96  GPA---KIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRA 135


>gi|254226501|ref|ZP_04920085.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
 gi|125620958|gb|EAZ49308.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|15602805|ref|NP_245877.1| anaerobic ribonucleoside triphosphate reductase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721261|gb|AAK03024.1| NrdD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  AI KA  AV       +I  +     + +Q    +    +  
Sbjct: 6   VIKRDGSRTGFEIQRIINAIKKAAQAV-------NIEDERYCHTMGQQVCNDIFTRYQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE +LM   + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDISHIQKIVENTLMAGKYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|290559190|gb|EFD92546.1| ribonucleotide reductase alpha subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 24/144 (16%)

Query: 775 ICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + GVS  I+P +   Y++ + S     F V++ F+      +   D+  I   K      
Sbjct: 1   MAGVSGGIEPIFALSYIRRSESLSEEKFEVLDPFV------KRYMDKLGIKSKK------ 48

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYR 890
                   DL  I  TA  IDP + ++  +  QK ID + S  + L   +    +D IYR
Sbjct: 49  --------DLPDIFVTAHNIDPFFRVKMQAAVQKHIDSSISSTVNLSAGTDADTVDKIYR 100

Query: 891 QAWLMGLKTTYYLRSRSATSVEKS 914
            AW +G K+    R  S   + KS
Sbjct: 101 YAWKLGCKSITVYREGSKNDILKS 124


>gi|116493703|ref|YP_805437.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei ATCC 334]
 gi|116103853|gb|ABJ68995.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           casei ATCC 334]
          Length = 727

 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G + +FD SKIS AI KA  +V     S  + +  +   +T +   R   H+ 
Sbjct: 6   TQIKKRDGRIVNFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRY--HDD 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLAR 100


>gi|260773807|ref|ZP_05882722.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
 gi|260610768|gb|EEX35972.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF   +I  A+  A   V  + A  ++ V   ++   E             
Sbjct: 5   VIKRDGSKASFSRDRIQAAVESAADQVTSEIAIYALNVALAVELQLEGQQQ--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKGLARSYIEYRHDRDIAREKQS 96


>gi|292669384|ref|ZP_06602810.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
 gi|292649019|gb|EFF66991.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI  A  + E      ++ + ++   +      R        
Sbjct: 26  VTKRAGHAVPYDRAKILNAIAAA--SKEYVHPMTALEIDEVTAAVEASFENRAE------ 77

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H
Sbjct: 78  --ISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRLAQKH 119


>gi|260437342|ref|ZP_05791158.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810254|gb|EFF69459.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 708

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   ++D  KI  AI KA   V         ++  I+ ++ +  V  L     
Sbjct: 1   MKVIKRDGREVTYDRGKIIIAIHKANDEVPISERISDEKIHGIVASIEKLGVNTL----- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +E+IQD +E  LM      + + Y++YR +R  +R + +  +S
Sbjct: 56  -----QVEEIQDIIEQKLMAERKFVLAKTYIIYRYQRQMIRKSNTTDES 99


>gi|153212457|ref|ZP_01948226.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
 gi|124116494|gb|EAY35314.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|238918443|ref|YP_002931957.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella
           ictaluri 93-146]
 gi|238868011|gb|ACR67722.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 712

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++A  A +   A     V  ++     Q   R        
Sbjct: 5   VIKRDGCQVPFNEQRIKEAVLRAAQAADVNDADYCATVARVV---AMQMADRER------ 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 56  --VDINDIQHAVENQLMAGNYKQLARAYIEYRHDRDVAREQRGRLNQD 101


>gi|229523013|ref|ZP_04412425.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
 gi|229339863|gb|EEO04873.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|229526819|ref|ZP_04416223.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229527641|ref|ZP_04417032.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229334003|gb|EEN99488.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229336977|gb|EEO01995.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|254285124|ref|ZP_04960090.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
 gi|150425127|gb|EDN16904.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|116516887|ref|YP_815706.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae D39]
 gi|116077463|gb|ABJ55183.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae D39]
          Length = 735

 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+  A      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHTA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|147671741|ref|YP_001215286.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           O395]
 gi|262169066|ref|ZP_06036759.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
 gi|146314124|gb|ABQ18664.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|227015436|gb|ACP11645.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|262022347|gb|EEY41055.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|15601271|ref|NP_232902.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae O1
           biovar eltor str. N16961]
 gi|121586449|ref|ZP_01676236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121726189|ref|ZP_01679487.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|153819569|ref|ZP_01972236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227812081|ref|YP_002812091.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229506317|ref|ZP_04395826.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229509563|ref|ZP_04399045.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229516616|ref|ZP_04406063.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229605868|ref|YP_002876572.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           MJ-1236]
 gi|254849674|ref|ZP_05239024.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262151236|ref|ZP_06028373.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
 gi|9657915|gb|AAF96414.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549274|gb|EAX59305.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121631408|gb|EAX63780.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|126509879|gb|EAZ72473.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227011223|gb|ACP07434.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229346497|gb|EEO11468.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229353513|gb|EEO18451.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229356668|gb|EEO21586.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229372354|gb|ACQ62776.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae MJ-1236]
 gi|254845379|gb|EET23793.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262031003|gb|EEY49630.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|229513317|ref|ZP_04402782.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
 gi|229349727|gb|EEO14682.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
          Length = 706

 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|15902227|ref|NP_357777.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae R6]
 gi|15457727|gb|AAK98987.1| Ribonucleotide reductase, class III, anaerobic [Streptococcus
           pneumoniae R6]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+  A      K    +  V+  + +LTE+ +T +  H++  
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHTA----ADKVMDVTPLVEKRLNDLTERIITEI--HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 72  QGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111


>gi|116871673|ref|YP_848454.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740551|emb|CAK19671.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A++       +  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAID-------LEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKTDMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|153830794|ref|ZP_01983461.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
 gi|148873724|gb|EDL71859.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
          Length = 579

 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|325680853|ref|ZP_08160391.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324107633|gb|EGC01911.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 723

 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ KA  A E KG      + D+   +  +        NK
Sbjct: 1   MKIIKRNGAEEIFDQSKIINAVKKANFAGE-KGRISDEEIADVTDYVEYKC-------NK 52

Query: 89  SALIVHIEDIQDQVECSLMQSG 110
               V +E+IQD VE  LM  G
Sbjct: 53  LGRAVSVEEIQDMVENQLMAKG 74


>gi|146283826|ref|YP_001173979.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri A1501]
 gi|145572031|gb|ABP81137.1| anaerobic class III ribonucleotide reductase [Pseudomonas stutzeri
           A1501]
 gi|327482155|gb|AEA85465.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri DSM 4166]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V + KR+G + +F+ +KI RAI  A  A  G+         D           RL    +
Sbjct: 11  VSLRKRDGRLAAFELAKIERAIAAAGAAT-GEF--------DAAVAQALAEAVRLQLARR 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +A  V +E +QD VE +LM +GH    R Y++YRE  + +R
Sbjct: 62  TA--VEVEQVQDAVERALMAAGHFDTARAYIVYRERHARLR 100


>gi|119774412|ref|YP_927152.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           amazonensis SB2B]
 gi|119766912|gb|ABL99482.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella
           amazonensis SB2B]
          Length = 705

 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD +++  A++ A      +GA+  +  +D    +       + Q ++ A
Sbjct: 4   VIKRDGCRAAFDETRLRDAVIAA------QGAA-GVEDKDYAATVASVVAAEVAQRDEVA 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               I ++QD VE  LM   + ++ R Y+ YR +R   R A S
Sbjct: 57  ----IHELQDAVENCLMSGPYKEVARHYIEYRHDRDVCREATS 95


>gi|331270949|ref|YP_004385660.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329127341|gb|AEB77285.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+ ++I  AI  A    +          Q + K L+      + + NK  
Sbjct: 5   VIKRDGREVDFNINRIVNAIELAMKDTK----------QGVDKELSVHIANDISKINKDK 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           + V  E+IQD VE  LM S    + +EY+ YR ER+  R ++S+
Sbjct: 55  MTV--EEIQDLVEDKLMDS-KKDVAKEYIKYRNERTKERDSKSN 95


>gi|60416876|emb|CAD71198.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|46906520|ref|YP_012909.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091416|ref|ZP_00229213.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|226222915|ref|YP_002757022.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes Clip81459]
 gi|254825669|ref|ZP_05230670.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|254853448|ref|ZP_05242796.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|254932506|ref|ZP_05265865.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|300764588|ref|ZP_07074580.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|46879785|gb|AAT03086.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47020093|gb|EAL10829.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|225875377|emb|CAS04074.1| Putative anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606817|gb|EEW19425.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|293584062|gb|EFF96094.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|293594913|gb|EFG02674.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|300514695|gb|EFK41750.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|328467888|gb|EGF38928.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 1816]
 gi|328476118|gb|EGF46827.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 220]
 gi|332310697|gb|EGJ23792.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. Scott A]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|317160546|gb|ADV04372.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|270356139|gb|ACZ80296.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|290892573|ref|ZP_06555566.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
 gi|290557882|gb|EFD91403.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|217965627|ref|YP_002351305.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|217334897|gb|ACK40691.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|307569824|emb|CAR83003.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes L99]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|46190969|ref|ZP_00120770.2| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
 gi|189440791|ref|YP_001955872.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum DJO10A]
 gi|189429226|gb|ACD99374.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q    + 
Sbjct: 20  KASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQVEGEIK 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +  + A    IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A     
Sbjct: 77  E--RYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA----V 129

Query: 145 LKIMMDDGTLISFNSKR 161
            + +  D TLI  N+ +
Sbjct: 130 ARFINHDPTLIHENANK 146


>gi|296327376|ref|ZP_06869925.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155491|gb|EFG96259.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 728

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|197337531|ref|YP_002157872.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
 gi|197314783|gb|ACH64232.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
           + VIKR+G   ++  S+I  A+         KGAS  +  + +    L    V   LQ  
Sbjct: 3   ITVIKRDGSRAAYKSSRIIDAV---------KGASEQVTPEIESYAKLVAHAVEIALQGQ 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +    V I  IQ+ VE  LMQ  H  + R Y+ YR +R   R
Sbjct: 54  QE---VGIRQIQELVENELMQGPHKVLARAYIEYRHDRDIAR 92


>gi|59713464|ref|YP_206239.1| anaerobic ribonucleoside triphosphate reductase [Vibrio fischeri
           ES114]
 gi|59481712|gb|AAW87351.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           ES114]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHN 87
           + VIKR+G   ++  S+I  A+         KGAS  +  + +    L    V   LQ  
Sbjct: 3   ITVIKRDGSRAAYKSSRIIDAV---------KGASEQVTPEIESYAKLVAHAVEIALQGQ 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +    V I  IQ+ VE  LMQ  H  + R Y+ YR +R   R
Sbjct: 54  QE---VGIRQIQELVENELMQGPHKVLARAYIEYRHDRDIAR 92


>gi|34557096|ref|NP_906911.1| anaerobic ribonucleoside triphosphate reductase [Wolinella
           succinogenes DSM 1740]
 gi|34482811|emb|CAE09811.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 702

 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G    F P KI  AI KAF +V       ++R  D I        T ++   +S
Sbjct: 4   HIFKRDGHAEKFQPYKIEDAIKKAFESV-------NVRYDDRI-------YTNVILAIES 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             +  +E IQD++E    ++G+  + + ++ YR
Sbjct: 50  ENLNSVECIQDRIELEFFKAGYFAVMKSFMNYR 82


>gi|261868776|ref|YP_003256698.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414108|gb|ACX83479.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV   G +       + + +++   +   Q     
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAV---GITDDRYCYAVAQKVSDDIFSHYQQE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S 
Sbjct: 59  --IDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQ 100


>gi|242554112|gb|ACS93387.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270355807|gb|ACZ79966.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|253686765|ref|YP_003015955.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753343|gb|ACT11419.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V              + Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATV-----------ACAVAQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQD VE  LM   + K+ R Y+ YR +R   R
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIAR 92


>gi|222354485|gb|ACM48033.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|239909412|gb|ACS32359.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|293390629|ref|ZP_06634963.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951163|gb|EFE01282.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV   G +       + + +++   +   Q     
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAV---GITDDRYCYAVAQKVSDDIFSHYQQE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S 
Sbjct: 59  --IDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQ 100


>gi|256557049|gb|ACU83705.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|254770915|gb|ACT81726.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|227533385|ref|ZP_03963434.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227188951|gb|EEI69018.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 727

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R   H+ 
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRY--HDD 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLAR 100


>gi|224498872|ref|ZP_03667221.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes Finland 1988]
          Length = 716

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+  +  A+       ++  +  ++ +  + V+
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAI-------NLEDETFLEEILLEVVS 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L   NK+ +   I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 55  EL--PNKADMT--IDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|52139230|ref|YP_081503.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|39842065|gb|AAR31609.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270311421|gb|ACZ72798.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|290564402|gb|ADD39105.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|256845818|ref|ZP_05551276.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
 gi|256719377|gb|EEU32932.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
          Length = 728

 Score = 41.2 bits (95), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|239630945|ref|ZP_04673976.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065267|ref|YP_003787290.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
 gi|239527228|gb|EEQ66229.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300437674|gb|ADK17440.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
          Length = 727

 Score = 41.2 bits (95), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R   H+ 
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRY--HDD 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLAR 100


>gi|19703656|ref|NP_603218.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713772|gb|AAL94517.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 728

 Score = 41.2 bits (95), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|270355641|gb|ACZ79801.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|327197952|ref|YP_004306269.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
 gi|306009272|gb|ADM73667.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
          Length = 499

 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 287 YERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           Y++ F F  ++G    Y +Y +H    +  + + +  R+A    +     E+ A+   N 
Sbjct: 92  YDKKFRFTTFMGAYKFYTQYAMHTTDGK-SILERYEDRIAFNALVMADGDEQLALNIANE 150

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           + S  +  +TPT  N+G  R     SCFL  + D++  I  ++     L+K  GG+
Sbjct: 151 MISQTYQPATPTFSNAGKLRGGNAVSCFLLNIEDNMTSIGRSVNSVLQLSKMGGGV 206


>gi|44903271|gb|AAS48950.1| UL45 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|132604|sp|P16782|RIR1_HCMVA RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein UL45
 gi|1780823|emb|CAA35404.1| HCMVUL45 [Human herpesvirus 5]
 gi|27808778|tpg|DAA00148.1| TPA: ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|219879649|gb|ACL51124.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|242345662|gb|ACS91980.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|242345828|gb|ACS92145.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270355973|gb|ACZ80131.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|191636946|ref|YP_001986112.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei BL23]
 gi|190711248|emb|CAQ65254.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           casei BL23]
 gi|327380973|gb|AEA52449.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei LC2W]
 gi|327384149|gb|AEA55623.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei BD-II]
          Length = 727

 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R   H+ 
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRY--HDD 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLAR 100


>gi|237740150|ref|ZP_04570631.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
 gi|229422167|gb|EEO37214.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
          Length = 728

 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+      ASR   ++     L E+  T++      
Sbjct: 3   RVIKRDGSVVEFSKDRIINAISKTFIQ-----ASREPNMK-----LIEKIATQV--EELP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + ++ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 51  SKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIR 90


>gi|294488390|gb|ADE88052.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|322391193|ref|ZP_08064665.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
 gi|321145946|gb|EFX41335.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
          Length = 733

 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--HNK 88
           V KR+G    FD  KI +A+ KA        A + + V  +++      V R++   H++
Sbjct: 16  VEKRDGRRVIFDVDKIDKALHKA--------AEKVMDVTPLVEKRLSALVERIVDEIHSR 67

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 68  FPQGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|163804060|ref|ZP_02197860.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
 gi|159172129|gb|EDP57065.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
          Length = 540

 Score = 41.2 bits (95), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 1   VHIHEIQDLVENELMQGSYKALARSYIEYRHDRDIAREKQS 41


>gi|157780061|gb|ABV71575.1| UL44 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|254771081|gb|ACT81891.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS-FK 712
           R + +G+ G  +AL  L   Y +  + ++ +   E + F A+ ASV+L +        F+
Sbjct: 668 RPLHIGVAGLHTALMRLGFTYFA--SWDLIERIFEHMYFAAVRASVDLCKSGLPRCEWFE 725

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            +++ +G F  +   L    R  +A  R     W+ L+  +   G+RN   +A+ P   +
Sbjct: 726 RTIYQEGKFIFE---LYRLPRLSIASAR-----WEALRADMLEFGLRNCQFLAVGPDDEV 777

Query: 773 ANICGVSQSIDPSYQNLY 790
           A++ GV+ S+  S   ++
Sbjct: 778 AHLWGVTPSVWASRGTVF 795


>gi|238761800|ref|ZP_04622774.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
 gi|238699914|gb|EEP92657.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +A     A     V  ++    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAAGVVDADYCATVARVVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|227115429|ref|ZP_03829085.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V              + Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATV-----------ACAVAQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I +IQD VE  LM   + K+ R Y+ YR +R   R
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIAR 92


>gi|153825874|ref|ZP_01978541.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
 gi|149740474|gb|EDM54597.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIVIYAL--NVALAVELKLRDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|313611065|gb|EFR85944.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL F2-208]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+         + + ++I ++D  +   E+ + 
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAV---------EASMKAINLED--ETFLEEILL 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            ++    +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 51  EVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|294141701|ref|YP_003557679.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
 gi|293328170|dbj|BAJ02901.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
          Length = 705

 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           VIKR+G  T FD ++I  A++ A  +      + ++ V D + K + ++T          
Sbjct: 4   VIKRDGCRTPFDETRIRDAVVAAANSAGIDDKNYAMSVADSVAKCVADKTE--------- 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              + I D+QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  ---IDIHDLQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSS 95


>gi|291461042|ref|ZP_06026597.2| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379291|gb|EFE86809.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 731

 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+      ASR   ++     L E+  T++      
Sbjct: 6   RVIKRDGSVVEFSKDRIINAISKTFIQ-----ASREPNMK-----LIEKIATQV--EELP 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             ++ +E+IQD V   LM S    I   Y  YR  ++++R
Sbjct: 54  GKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIR 93


>gi|52548444|gb|AAU82293.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos13E1]
          Length = 699

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTEQTVTRLLQHNK 88
           ++ KR+G V  FD  KI+ AI KA  A  G+   +  R   + + NL +Q +        
Sbjct: 4   KIRKRDGRVVRFDSKKIADAIAKAGAAT-GEFDHKIARALTLKVLNLAQQAIPHR----- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              I  +E IQD VE  L+ S + K  R Y++YRE+ + +R   + +  D
Sbjct: 58  ---IPTVEGIQDVVEEVLLSSPYRKTARAYIIYREQHAGIREITAKADVD 104


>gi|332160122|ref|YP_004296699.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664352|gb|ADZ40996.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861978|emb|CBX72146.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica W22703]
          Length = 712

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V   +    E             
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATVARAVAQTMENQPK--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISR 92


>gi|328543068|ref|YP_004303177.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412814|gb|ADZ69877.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 145

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R
Sbjct: 69  AYEIGPEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINRAQIHAWKKGIKTIYYIRLR 128

Query: 907 SATSVEKSTLKG 918
              ++E + ++G
Sbjct: 129 Q-MALEGTEVQG 139


>gi|163789959|ref|ZP_02184395.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
 gi|159874899|gb|EDP68967.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
          Length = 737

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 59/106 (55%), Gaps = 8/106 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G    F   KI  A++KA  ++  +   +SI+ +++I++ + ++   R + + 
Sbjct: 17  IKVMKRDGREVEFKEEKIFEALLKAQRSLIKETDEKSIQELKEIVEVIKKEIAQRFVSN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                + I +IQ  VE  L+ +  H++   Y++YR  R D+  +Q+
Sbjct: 76  -----IKIYEIQSIVEHVLIDAHKHELAEAYLVYRTRR-DLERSQA 115


>gi|296454674|ref|YP_003661817.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184105|gb|ADH00987.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 802

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q    + 
Sbjct: 20  KASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQVEGEI- 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              + A    IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A     
Sbjct: 76  -KGRYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA----V 129

Query: 145 LKIMMDDGTLISFNSKR 161
            + +  D TLI  N+ +
Sbjct: 130 ARFINHDPTLIHENANK 146


>gi|322388408|ref|ZP_08062011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
 gi|321140721|gb|EFX36223.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
          Length = 737

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V         R+  +++ + E+  +R  Q     
Sbjct: 18  VEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSTLVERIVEEIHSRFPQG---- 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L++   + +  EY+ YR +R   R+
Sbjct: 74  --VKIYEIQNIVEHELLEVKEYALAEEYITYRTQRDFERS 111


>gi|307107581|gb|EFN55823.1| hypothetical protein CHLNCDRAFT_145342 [Chlorella variabilis]
          Length = 1229

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 209 LIEKEPNYAKVTARFLLEKLRR----EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           L E EP+ A +++  L E  RR    +  TT   + Q  T H++ C   + F     +G 
Sbjct: 527 LAEVEPSAATLSSTVLPELNRRLDALQAQTTGRLQQQGFTEHQVHC---QRFLNLRYDGT 583

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              ++  S  D D   +A +  Y+R+F F+     IL D   +  +G   E+P+A
Sbjct: 584 DVPIMTPSPEDGDFA-VAFEQAYQREFGFKLERRAILVDDLRVRASGRHTELPEA 637


>gi|261210268|ref|ZP_05924564.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
 gi|260840612|gb|EEX67168.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
          Length = 706

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  + +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQDIAIYAL--NVALAVELKLRDYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|146310102|ref|YP_001175176.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter sp.
           638]
 gi|145316978|gb|ABP59125.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter sp.
           638]
          Length = 712

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +I+            Q N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEIVSQ----------QMNER 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           +  V I +IQ  VE  LM   H ++ R Y+ YR +R
Sbjct: 54  SQ-VDINEIQTAVENQLMSGPHKQLARAYIEYRHDR 88


>gi|158320179|ref|YP_001512686.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140378|gb|ABW18690.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 773

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK--NLTEQTVTRLLQH 86
            ++ KR+G    F+  KI+ AI +A         S+S+  +D     N+ EQ V   ++ 
Sbjct: 3   TKITKRDGREVPFNIEKIANAIFRA---------SKSVGEEDYEAAFNIAEQAVA-YIEK 52

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +     +E IQD VE  L+++   +I + Y++YR ER+ +R
Sbjct: 53  EINNPNPSVEQIQDIVEKVLIKNEKAEIAKAYIIYRAERTRLR 95


>gi|255657771|ref|ZP_05403180.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260849961|gb|EEX69968.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 727

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+KRNG +  FD SKIS AI+KA     G   + SI  Q I  +   Q         K
Sbjct: 2   VKVVKRNGSLADFDKSKISNAILKAMTV--GNTINESIASQ-IADDAEHQY--------K 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V I DI+  V   L + G     + Y  YR  R   R A +
Sbjct: 51  DKEKVSISDIETFVFNELCKYGQQMTAKAYEGYRSIREFQRKASN 95


>gi|260878201|ref|ZP_05890556.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
 gi|308093471|gb|EFO43166.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
          Length = 694

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 56  AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKIT 115
           AVE    ++   V     N+      +L  H++    VHI +IQD VE  LMQ  +  + 
Sbjct: 11  AVEAAAENKDKDVAIYALNVALAVELQLKDHDE----VHIHEIQDLVENELMQGPYKALA 66

Query: 116 REYVLYREERSDVRAAQS 133
           R Y+ YR +R   R  QS
Sbjct: 67  RSYIEYRHDRDIAREKQS 84


>gi|152973118|ref|YP_001338264.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892730|ref|YP_002917464.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150957967|gb|ABR79997.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238545046|dbj|BAH61397.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 712

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+  +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQR 92


>gi|319775018|ref|YP_004137506.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|329123079|ref|ZP_08251649.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
 gi|317449609|emb|CBY85814.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|327471634|gb|EGF17076.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
          Length = 707

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  + F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRSEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|315617655|gb|EFU98261.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           3431]
          Length = 712

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  I+   +EQ   R       
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIV---SEQMQGRSQ----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|84393950|ref|ZP_00992691.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
 gi|84375449|gb|EAP92355.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
          Length = 706

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A        A + I +  +  N+      +L  +++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-----SDKADKEIAIYAL--NVALAVELKLEDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHISEIQTLVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|297600071|ref|NP_001048435.2| Os02g0804900 [Oryza sativa Japonica Group]
 gi|255671328|dbj|BAF10349.2| Os02g0804900 [Oryza sativa Japonica Group]
          Length = 78

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW
Sbjct: 3   TVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAW 49


>gi|57867411|ref|YP_189076.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638069|gb|AAW54857.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 87

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P+ +     TAF+I    +I  A+  QKWIDQ  S  L+++ E    KL  +Y  A   G
Sbjct: 6   PETMWFYSPTAFDIPQEHIINVAAVAQKWIDQGVSTILFVNSEIETNKLARLYAYAHDRG 65

Query: 897 LKTTYYLRSR 906
           LK+ YY R++
Sbjct: 66  LKSLYYTRNK 75


>gi|170767095|ref|ZP_02901548.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
 gi|170124533|gb|EDS93464.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
          Length = 712

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  I+   +EQ   R       
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIV---SEQMQGRSQ----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|312142435|ref|YP_003993881.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
 gi|311903086|gb|ADQ13527.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
          Length = 798

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFM-AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G    +   KI  AI +A + + E  G   + +V   ++N  ++       ++K 
Sbjct: 8   VIKRDGREVEYKREKIKTAIHRAMIESGEDAGEKDAEKVAVEVENSLKKEF-----YSKD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +  +E+IQD VE  LM+S +    + Y+LYR +R   R
Sbjct: 63  K-VPKVEEIQDLVEEELMKSAYVTTAKTYILYRSKRQQSR 101


>gi|213691512|ref|YP_002322098.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213522973|gb|ACJ51720.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457589|dbj|BAJ68210.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 802

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q    + 
Sbjct: 20  KASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQVEGEI- 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              + A    IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A     
Sbjct: 76  -KGRYAGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA----V 129

Query: 145 LKIMMDDGTLISFNSKR 161
            + +  D TLI  N+ +
Sbjct: 130 SRFINHDPTLIHENANK 146


>gi|238926706|ref|ZP_04658466.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
 gi|238885463|gb|EEQ49101.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
          Length = 761

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D SKI  AI  A  + E      ++ +  + K++ E    R        
Sbjct: 13  VTKRAGNAVPYDRSKILNAITSA--SKEYVHPMTALEIDTVTKSVEEAFGDRTE------ 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + +E+IQD VE  L+  GH+ I R Y+ Y
Sbjct: 65  --ISVEEIQDLVEKQLLAHGHYDIARRYITY 93


>gi|304437818|ref|ZP_07397767.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369175|gb|EFM22851.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 761

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D SKI  AI  A  + E      ++ +  + K++ E    R        
Sbjct: 13  VTKRAGNAVPYDRSKILNAITSA--SKEYVHPMTALEIDTVTKSVEEAFGDRTE------ 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + +E+IQD VE  L+  GH+ I R Y+ Y
Sbjct: 65  --ISVEEIQDLVEKQLLAHGHYDIARRYITY 93


>gi|327197760|ref|YP_004301458.1| gp125 [Brochothrix phage A9]
 gi|299810360|gb|ADJ53159.1| gp125 [Brochothrix phage A9]
          Length = 213

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +F +LL    ++ +TPT+ N+   R  ++ SC+L  V DD+  I  A+  +  L++  
Sbjct: 144 ASKFVDLLIKQEYVPATPTMMNALRARAGEMVSCYLIDVNDDMLSISRAVNSSLQLSRLG 203

Query: 398 GGLG 401
           GG+G
Sbjct: 204 GGVG 207


>gi|262403554|ref|ZP_06080112.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
 gi|262350058|gb|EEY99193.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
          Length = 706

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A      + A + I +  +  N+      +L  + +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----AEHADQEIAIYAL--NVALAVELKLKGYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|229816394|ref|ZP_04446699.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
 gi|229808043|gb|EEP43840.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
          Length = 740

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-- 86
           +++IKR+G   +FD  KI  AI         KGA+  ++  +    LT++ V    Q+  
Sbjct: 1   MKIIKRSGSEVNFDIQKIIDAI---------KGANSEVKEAE---RLTDRQVVYAAQNVA 48

Query: 87  ---NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                +   V +E+IQD VE  +M     ++ R Y++YR
Sbjct: 49  DRCESAGHTVSVEEIQDMVEDEIMALDRFEVARRYIIYR 87


>gi|213420919|ref|ZP_03353985.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 66

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH
Sbjct: 8   AGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWH 66


>gi|68248626|ref|YP_247738.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 86-028NP]
 gi|68056825|gb|AAX87078.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 86-028NP]
          Length = 707

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKVVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|86148016|ref|ZP_01066319.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
 gi|85834240|gb|EAQ52395.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
          Length = 706

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++        +L  +++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVE-------LKLEDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|148825645|ref|YP_001290398.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
 gi|148715805|gb|ABQ98015.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
          Length = 708

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQDE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|294510243|ref|YP_002395294.2| anaerobic ribonucleoside-triphosphate reductase (N-terminal part)
           [Vibrio splendidus LGP32]
 gi|223587979|emb|CAV26396.2| anaerobic ribonucleoside-triphosphate reductase [Vibrio splendidus
           LGP32]
          Length = 707

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++        +L  +++  
Sbjct: 6   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVE-------LKLEDYDE-- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 57  --VHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQS 97


>gi|301168668|emb|CBW28259.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 10810]
          Length = 707

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV       +I  +     + ++    +  H++  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV-------NISDEFYCHQIGQEVGNEIFIHHQGE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|145633716|ref|ZP_01789442.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145635474|ref|ZP_01791174.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229845475|ref|ZP_04465604.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
 gi|229846995|ref|ZP_04467101.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|144985476|gb|EDJ92297.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145267239|gb|EDK07243.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229810079|gb|EEP45799.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|229811578|gb|EEP47278.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
          Length = 707

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQDE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|78777437|ref|YP_393752.1| anaerobic ribonucleoside triphosphate reductase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497977|gb|ABB44517.1| Ribonucleoside-triphosphate reductase, anaerobic [Sulfurimonas
           denitrificans DSM 1251]
          Length = 698

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF            + Q+II +        +L   K+ 
Sbjct: 5   ILKRDGTHKEFLSFKIEDAIKKAF------------KSQNIIYD--SSIFFNVLDELKNK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            ++ +EDIQD +E  L +S +  + R +++YR
Sbjct: 51  RVIAVEDIQDLIEKELYKSRYFDVMRSFMIYR 82


>gi|319896488|ref|YP_004134681.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
 gi|317431990|emb|CBY80338.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
          Length = 707

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASHYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|145630624|ref|ZP_01786403.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
 gi|144983750|gb|EDJ91200.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
          Length = 707

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|257458936|ref|ZP_05624056.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
 gi|257443640|gb|EEV18763.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
          Length = 702

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 14/93 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G    F   KI  AI KA+ +V   G+    +V D +       ++ ++  +K 
Sbjct: 3   KIIKRDGSFQEFQSYKIKDAIKKAYKSV---GSEFDEKVFDNV-------MSAIVFKDK- 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
              + +EDIQD +E  L ++G   + + +++YR
Sbjct: 52  ---LSVEDIQDLIEKKLFEAGDFAVLKSFMIYR 81


>gi|237744003|ref|ZP_04574484.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
 gi|229431232|gb|EEO41444.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
          Length = 728

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|23466296|ref|NP_696899.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227546652|ref|ZP_03976701.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621685|ref|ZP_04664716.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312134044|ref|YP_004001383.1| nrdd [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482888|ref|ZP_07941895.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|322689748|ref|YP_004209482.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691698|ref|YP_004221268.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|23327048|gb|AAN25535.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227212969|gb|EEI80848.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515560|gb|EEQ55427.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|291516291|emb|CBK69907.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311773352|gb|ADQ02840.1| NrdD [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915662|gb|EFV37077.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|320456554|dbj|BAJ67176.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461084|dbj|BAJ71704.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 802

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRL 83
           K   V V KR+G V  FDP  I  A+  AF  +  + G      ++     +  +   R 
Sbjct: 20  KASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEEDAMIRGFANQVEGEIKGRY 79

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               K      IEDIQ+ VE +L+ +  + + R Y  YR ++ D++ A++   ++A    
Sbjct: 80  TGPAK------IEDIQNLVEHALIDAHLYDVARAYTNYRLDK-DIQRAKATDVNEA---- 128

Query: 144 KLKIMMDDGTLISFNSKR 161
             + +  D TLI  N+ +
Sbjct: 129 VARFINHDPTLIHENANK 146


>gi|270291993|ref|ZP_06198208.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
 gi|270279521|gb|EFA25363.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
          Length = 735

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ V  +  H++  
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNGLLERIVAEI--HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109


>gi|256028545|ref|ZP_05442379.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289766464|ref|ZP_06525842.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289718019|gb|EFD82031.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
          Length = 728

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|218702942|ref|YP_002410571.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI39]
 gi|218372928|emb|CAR20810.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI39]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|157374739|ref|YP_001473339.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           sediminis HAW-EB3]
 gi|157317113|gb|ABV36211.1| Ribonucleoside-triphosphate reductase [Shewanella sediminis
           HAW-EB3]
          Length = 705

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-----IIKNLTEQTVTRLLQ 85
           VIKR+G  T FD ++I  A+           A+ S  + D     ++ N   ++V  + +
Sbjct: 4   VIKRDGYRTPFDETRIRDAV---------SAAANSAGIDDNDYATLVANNVAESVADMPE 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  V I D+QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  -------VDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSS 95


>gi|194433892|ref|ZP_03066165.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|194417873|gb|EDX33969.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|320177637|gb|EFW52627.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           ATCC 9905]
 gi|332083239|gb|EGI88470.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           5216-82]
 gi|332083702|gb|EGI88920.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 155-74]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|260497987|ref|ZP_05816102.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
 gi|260196452|gb|EEW93984.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
          Length = 728

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F     + ASR   ++ +I+ +  Q        +  
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF-----EQASREPNMK-LIEKIASQV------EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKE 93


>gi|260847071|ref|YP_003224849.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
 gi|257762218|dbj|BAI33715.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|146970|gb|AAA24226.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. W3110]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|170021751|ref|YP_001726705.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|193069836|ref|ZP_03050786.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218561398|ref|YP_002394311.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           S88]
 gi|256025176|ref|ZP_05439041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia sp.
           4_1_40B]
 gi|307312986|ref|ZP_07592614.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|312973946|ref|ZP_07788117.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|331671145|ref|ZP_08371978.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
 gi|169756679|gb|ACA79378.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|192956890|gb|EDV87343.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218368167|emb|CAR05976.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           S88]
 gi|306907154|gb|EFN37661.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|309704744|emb|CBJ04095.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ETEC H10407]
 gi|310331480|gb|EFP98736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|315063548|gb|ADT77875.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|320200633|gb|EFW75219.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EC4100B]
 gi|323380372|gb|ADX52640.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           KO11]
 gi|323935363|gb|EGB31711.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1520]
 gi|323940158|gb|EGB36352.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E482]
 gi|323945973|gb|EGB42011.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H120]
 gi|331061734|gb|EGI33660.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|188494309|ref|ZP_03001579.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|191167267|ref|ZP_03029085.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
 gi|188489508|gb|EDU64611.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|190902720|gb|EDV62451.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|187731109|ref|YP_001882978.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           CDC 3083-94]
 gi|187428101|gb|ACD07375.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           CDC 3083-94]
          Length = 712

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|26251144|ref|NP_757184.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           CFT073]
 gi|91213791|ref|YP_543777.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UTI89]
 gi|110644599|ref|YP_672329.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           536]
 gi|117626584|ref|YP_859907.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|191170771|ref|ZP_03032323.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|237703913|ref|ZP_04534394.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|306815544|ref|ZP_07449693.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|331650369|ref|ZP_08351441.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331660818|ref|ZP_08361750.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
 gi|26111576|gb|AAN83758.1|AE016771_269 Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           CFT073]
 gi|91075365|gb|ABE10246.1| NrdD subunit of ribonucleoside-triphosphate reductase and anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli UTI89]
 gi|110346191|gb|ABG72428.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           536]
 gi|115515708|gb|ABJ03783.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|190908995|gb|EDV68582.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|222036011|emb|CAP78756.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LF82]
 gi|226901825|gb|EEH88084.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|281181337|dbj|BAI57667.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE15]
 gi|294490614|gb|ADE89370.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IHE3034]
 gi|305851206|gb|EFM51661.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|307556410|gb|ADN49185.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ABU 83972]
 gi|307629314|gb|ADN73618.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UM146]
 gi|312948891|gb|ADR29718.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|323950691|gb|EGB46569.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H252]
 gi|323955527|gb|EGB51291.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H263]
 gi|330908585|gb|EGH37104.1| ribonucleotide reductase of class 3 (anaerobic), large subunit
           [Escherichia coli AA86]
 gi|331040763|gb|EGI12921.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331051860|gb|EGI23899.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|16132060|ref|NP_418659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89110956|ref|AP_004736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157163713|ref|YP_001461031.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           HS]
 gi|170083679|ref|YP_001732999.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|193063742|ref|ZP_03044830.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194426625|ref|ZP_03059179.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194437791|ref|ZP_03069886.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209921734|ref|YP_002295818.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SE11]
 gi|218556788|ref|YP_002389702.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI1]
 gi|218707847|ref|YP_002415366.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UMN026]
 gi|238903341|ref|YP_002929137.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|253775137|ref|YP_003037968.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037259|ref|ZP_04871336.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|254164165|ref|YP_003047275.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|256019890|ref|ZP_05433755.1| anaerobic ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|260858393|ref|YP_003232284.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|260870993|ref|YP_003237395.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|293402863|ref|ZP_06646960.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|293417740|ref|ZP_06660362.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|293476542|ref|ZP_06664950.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|298378391|ref|ZP_06988275.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|301028070|ref|ZP_07191351.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|307140932|ref|ZP_07500288.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           H736]
 gi|312965919|ref|ZP_07780145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|331644987|ref|ZP_08346104.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331656073|ref|ZP_08357061.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331680375|ref|ZP_08381034.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332281030|ref|ZP_08393443.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|34395948|sp|P28903|NRDD_ECOLI RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|537080|gb|AAA97135.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790686|gb|AAC77195.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85676987|dbj|BAE78237.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K12 substr. W3110]
 gi|157069393|gb|ABV08648.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           HS]
 gi|169891514|gb|ACB05221.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|192930729|gb|EDV83335.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194415364|gb|EDX31632.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194423287|gb|EDX39279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209914993|dbj|BAG80067.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE11]
 gi|218363557|emb|CAR01212.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI1]
 gi|218434944|emb|CAR15883.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           UMN026]
 gi|226840365|gb|EEH72367.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|238859989|gb|ACR61987.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|242379760|emb|CAQ34587.1| ribonucleoside-triphosphate reductase, subunit of anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli BL21(DE3)]
 gi|253326181|gb|ACT30783.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976068|gb|ACT41739.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|253980224|gb|ACT45894.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           BL21(DE3)]
 gi|257757042|dbj|BAI28544.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|257767349|dbj|BAI38844.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|260450939|gb|ACX41361.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           DH1]
 gi|284924412|emb|CBG37536.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           042]
 gi|291320995|gb|EFE60437.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|291429778|gb|EFF02792.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|291430458|gb|EFF03456.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|298280725|gb|EFI22226.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|299878843|gb|EFI87054.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|312289162|gb|EFR17056.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|315138791|dbj|BAJ45950.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           DH1]
 gi|320175802|gb|EFW50886.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae CDC 74-1112]
 gi|323157557|gb|EFZ43666.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EPECa14]
 gi|323162035|gb|EFZ47907.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E128010]
 gi|323176153|gb|EFZ61745.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1180]
 gi|323970506|gb|EGB65765.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA007]
 gi|323975417|gb|EGB70518.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TW10509]
 gi|324118800|gb|EGC12692.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1167]
 gi|331035962|gb|EGI08200.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331046427|gb|EGI18517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331071838|gb|EGI43174.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332103382|gb|EGJ06728.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|332346317|gb|AEE59651.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Escherichia
           coli UMNK88]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|323181971|gb|EFZ67382.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1357]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|157157950|ref|YP_001465747.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           E24377A]
 gi|157079980|gb|ABV19688.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E24377A]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|323960281|gb|EGB55922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H489]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|323171679|gb|EFZ57325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LT-68]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|308049531|ref|YP_003913097.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
 gi|307631721|gb|ADN76023.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
          Length = 706

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G  VIKR+G    F P  I +A+++A  A             D++               
Sbjct: 2   GPVVIKRDGCRVPFKPELIQQAVLRAATAAG---------CDDLVYAAGVAQAVAAQLEG 52

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +S   V I  IQD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 53  ESE--VAINRIQDAVENQLMEGPYKDLARSYIEYRHDRDLAREKAS 96


>gi|170681280|ref|YP_001746642.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218697988|ref|YP_002405655.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           55989]
 gi|293407962|ref|ZP_06651802.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331665909|ref|ZP_08366803.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331671386|ref|ZP_08372184.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
 gi|170518998|gb|ACB17176.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218354720|emb|CAV01764.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           55989]
 gi|291472213|gb|EFF14695.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331056960|gb|EGI28954.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331071231|gb|EGI42588.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|170727389|ref|YP_001761415.1| anaerobic ribonucleoside triphosphate reductase [Shewanella woodyi
           ATCC 51908]
 gi|169812736|gb|ACA87320.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella woodyi
           ATCC 51908]
          Length = 705

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)

Query: 31  VIKRNGGVTSFDPSKI--SRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQH 86
           VIKR+G  T FD ++I  + A       ++  G +  +  +V D + N+ E         
Sbjct: 4   VIKRDGYRTPFDETRIRDAVAAAAISAGIDDNGYATQVATKVADTVANMAE--------- 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                 V I D+QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  ------VDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSS 95


>gi|82546515|ref|YP_410462.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           Sb227]
 gi|81247926|gb|ABB68634.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           Sb227]
 gi|320185332|gb|EFW60104.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           CDC 796-83]
 gi|332087111|gb|EGI92245.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           3594-74]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|15804828|ref|NP_290869.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 EDL933]
 gi|15834469|ref|NP_313242.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751072|ref|ZP_02776094.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754815|ref|ZP_02779822.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760488|ref|ZP_02785495.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766524|ref|ZP_02791531.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774045|ref|ZP_02799052.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782760|ref|ZP_02807767.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784883|ref|ZP_02809890.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|168797813|ref|ZP_02822820.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|195937263|ref|ZP_03082645.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808013|ref|ZP_03250350.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811996|ref|ZP_03253325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820712|ref|ZP_03261032.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395826|ref|YP_002273781.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325941|ref|ZP_03442025.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796258|ref|YP_003081095.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225358|ref|ZP_05939639.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255389|ref|ZP_05947922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285651|ref|YP_003502469.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519242|gb|AAG59435.1|AE005656_3 anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13364692|dbj|BAB38638.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770204|gb|EDU34048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014840|gb|EDU52962.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999753|gb|EDU68739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357853|gb|EDU76272.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364193|gb|EDU82612.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368865|gb|EDU87281.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374739|gb|EDU93155.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|189379431|gb|EDU97847.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727814|gb|EDZ77415.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733273|gb|EDZ81960.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740835|gb|EDZ88517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157226|gb|ACI34659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209749668|gb|ACI73141.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749670|gb|ACI73142.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749672|gb|ACI73143.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749674|gb|ACI73144.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749676|gb|ACI73145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|217322162|gb|EEC30586.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595658|gb|ACT75019.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290765524|gb|ADD59485.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190629|gb|EFW65279.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638997|gb|EFX08643.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. G5101]
 gi|320644366|gb|EFX13431.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649684|gb|EFX18208.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655080|gb|EFX23041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660587|gb|EFX28048.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665856|gb|EFX32893.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326345429|gb|EGD69172.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346713|gb|EGD70447.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. 1044]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|82779300|ref|YP_405649.1| anaerobic ribonucleoside triphosphate reductase [Shigella
           dysenteriae Sd197]
 gi|81243448|gb|ABB64158.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae Sd197]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|74314715|ref|YP_313134.1| anaerobic ribonucleoside triphosphate reductase [Shigella sonnei
           Ss046]
 gi|73858192|gb|AAZ90899.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           Ss046]
 gi|323166725|gb|EFZ52483.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           53G]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|218692626|ref|YP_002400838.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ED1a]
 gi|218430190|emb|CAR11048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ED1a]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+ 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|254302715|ref|ZP_04970073.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322907|gb|EDK88157.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 728

 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD ++I  AI K F     + ASR   ++     L E+  +++   +  
Sbjct: 3   RVIKRDGSVVEFDRNRIINAIRKTF-----EQASREPNMK-----LLEKIASQV--EDLP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             ++ +E IQD V   LM S    I   Y  YR  ++++R
Sbjct: 51  DKVLSVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIR 90


>gi|218551536|ref|YP_002385328.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|331681261|ref|ZP_08381898.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
 gi|218359078|emb|CAQ91739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|320193644|gb|EFW68279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           WV_060327]
 gi|323965629|gb|EGB61083.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M863]
 gi|325499798|gb|EGC97657.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ECD227]
 gi|327250183|gb|EGE61902.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           STEC_7v]
 gi|331081482|gb|EGI52643.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R       
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGRSQ----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|324112138|gb|EGC06116.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii B253]
          Length = 712

 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R       
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGRSQ----- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ---VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|256822439|ref|YP_003146402.1| anaerobic ribonucleoside triphosphate reductase [Kangiella
           koreensis DSM 16069]
 gi|256795978|gb|ACV26634.1| anaerobic ribonucleoside-triphosphate reductase [Kangiella
           koreensis DSM 16069]
          Length = 679

 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P P KI     +KR+     F+ +KI  A+MKA       G +      D  + LT Q +
Sbjct: 9   PMPLKI-----VKRDLTEAKFERAKIYEAVMKA-------GKASGEFDADEAEKLTRQVI 56

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             L        +  +E +QD VE  L  + +    + Y+LYRE+   +R
Sbjct: 57  DVLSFRFTDLTVPTVEQVQDIVEHCLAVNQYFATAKAYILYREKHKIIR 105


>gi|260655536|ref|ZP_05861024.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
 gi|260629984|gb|EEX48178.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
          Length = 693

 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD  KI  A+MKA  AV     S       I +N+T Q  + L       
Sbjct: 16  IFKRDGSQVLFDREKIRVAVMKAAAAVGSSDPS-------IGENVTRQVESYLAIFYDHD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            I  +E IQD VE  L+++ + ++ + Y+LYR +R+ +R
Sbjct: 69  SIPSVEQIQDLVERILIENDYAEVAKAYILYRRQRARIR 107


>gi|206579484|ref|YP_002240794.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
 gi|206568542|gb|ACI10318.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
          Length = 712

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQR 92


>gi|199599013|ref|ZP_03212421.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|258507133|ref|YP_003169884.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|199590121|gb|EDY98219.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|257147060|emb|CAR86033.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|259648503|dbj|BAI40665.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
          Length = 727

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++   ++
Sbjct: 6   TQIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKI--RDR 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 60  YHDDVEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLAR 100


>gi|148982125|ref|ZP_01816601.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
 gi|145960658|gb|EDK26004.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
          Length = 496

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++        +L  +++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVE-------LKLEDYDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|81429068|ref|YP_396068.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610710|emb|CAI55761.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 738

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G +  F   KI +A++KA   V+ +      ++   +  ++  +   R  +  
Sbjct: 16  IKVLKRDGRILPFSADKIEQAVIKAAKNVKDELEPLDYQILNSVATDVVSEVGARFDKD- 74

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I +IQ+ VE  L++   + I +EY+ YR +R   R    +  +D     + K+
Sbjct: 75  -----VKIYEIQNIVEHKLLEHHQYDIAQEYINYRTQRDFAR----NKATDINFTIQ-KL 124

Query: 148 MMDDGTLISFNSKR 161
           +  D T+++ N+ +
Sbjct: 125 LAKDQTVVNENANK 138


>gi|290512190|ref|ZP_06551557.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
 gi|289775185|gb|EFD83186.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
          Length = 712

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQR 92


>gi|229550958|ref|ZP_04439683.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538331|ref|YP_003172830.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
 gi|229315673|gb|EEN81646.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257150007|emb|CAR88979.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
          Length = 727

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++   ++
Sbjct: 6   TQIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKI--RDR 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               V I +IQ  VE +L+ +  +     Y  YR +R   R
Sbjct: 60  YHDDVEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLAR 100


>gi|288937450|ref|YP_003441509.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
 gi|288892159|gb|ADC60477.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
          Length = 712

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQR 92


>gi|294634537|ref|ZP_06713072.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
 gi|291092051|gb|EFE24612.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
          Length = 724

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++A         S++  V D     T   V  +   ++  
Sbjct: 17  VIKRDGCQVPFNEQRIKEAVLRA---------SQAAGVDDADYCATVARVVAMQMADRER 67

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 68  --VDINEIQNAVENQLMAGDYKQLARAYIEYRHDRDVAREQRGRLNQD 113


>gi|296101023|ref|YP_003611169.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055482|gb|ADF60220.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 712

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII-KNLTEQTVTRLLQHNK 88
            V+KR+G    F   +I  AI++A  A     A     V D++ + + E++         
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVADVVSRQMNERSQ-------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  ----VDISEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|254993187|ref|ZP_05275377.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-064]
          Length = 165

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+         + + ++I ++D  +   E+ + 
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAV---------EASMKAINLED--ETFLEEILL 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            ++    +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +        
Sbjct: 51  EVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE- 109

Query: 142 APKLKIMMDDGTLISFNSKR 161
               K++  D T+++ N+ +
Sbjct: 110 ----KLLQKDKTVVNENANK 125


>gi|308189133|ref|YP_003933264.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
 gi|308059643|gb|ADO11815.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
          Length = 712

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD  +I +A+M A  A E   A+   +V        E+   RL    +  
Sbjct: 5   VIKRDGCRTGFDAQRIEQAVMAAARAAEVDDAAWCAQV-------AERVALRLADRPE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             V I +IQ  VE +LM   + ++ R Y+ YR +R   R  QS 
Sbjct: 56  --VDISEIQCAVEETLMAGPYPQLARAYIEYRHDRDVARDRQSQ 97


>gi|260770526|ref|ZP_05879459.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|260615864|gb|EEX41050.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|315181612|gb|ADT88525.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio furnissii
           NCTC 11218]
          Length = 706

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A   V  + A  ++ V   ++        +L ++ +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEEVNSEIAIYALNVALAVE-------LKLKEYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VRIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|289571254|ref|ZP_06451481.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis T17]
 gi|289545008|gb|EFD48656.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis T17]
          Length = 212

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLH-INGSR-IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D  Y + F F  +LG    Y  Y L   +G R +E  +   + VA+ LA  +T   +  V
Sbjct: 69  DRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLV 128

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    +    F  +TPT  NSG +   +  SCFL  V D++  I  ++     L+K  GG
Sbjct: 129 D---EIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVEDNMESIGRSINSALQLSKRGGG 185

Query: 400 LGNDWTPVRGLGAHI 414
           +    T +R  GA I
Sbjct: 186 VALLLTNIREHGAPI 200


>gi|258623425|ref|ZP_05718428.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262164241|ref|ZP_06031979.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
 gi|258584240|gb|EEW08986.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262026621|gb|EEY45288.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
          Length = 706

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A        A + I +  +  N+      +L  + +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----ADHADQEIAIYAL--NVALAVELKLKGYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|258624529|ref|ZP_05719471.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
 gi|258583182|gb|EEW07989.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
          Length = 706

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A        A + I +  +  N+      +L  + +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----ADHADQEIAIYAL--NVALAVELKLKGYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|297519341|ref|ZP_06937727.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           OP50]
          Length = 455

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|262173685|ref|ZP_06041362.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
 gi|261891043|gb|EEY37030.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
          Length = 706

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A        A + I +  +  N+      +L  + +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----ADHADQEIAIYAL--NVALAVELKLKGYEE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQS 96


>gi|145639636|ref|ZP_01795239.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|145271193|gb|EDK11107.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|309750606|gb|ADO80590.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2866]
          Length = 707

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQ 100


>gi|16272049|ref|NP_438248.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae Rd KW20]
 gi|260580621|ref|ZP_05848448.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
 gi|1171762|sp|P43752|NRDD_HAEIN RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|1573024|gb|AAC21751.1| anaerobic ribonucleoside-triphosphate reductase (nrdD) [Haemophilus
           influenzae Rd KW20]
 gi|260092683|gb|EEW76619.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
          Length = 707

 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAV---NISDEFYCHQIGQEVGNEIFTR---HQGE- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQ 100


>gi|27366780|ref|NP_762307.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           CMCP6]
 gi|27358347|gb|AAO07297.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio vulnificus
           CMCP6]
          Length = 706

 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A   V+ + A  ++ V   ++        +L  H++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAAAENVDKEIAIYALNVALAVE-------LQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|37676555|ref|NP_936951.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           YJ016]
 gi|37201097|dbj|BAC96921.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Vibrio
           vulnificus YJ016]
          Length = 706

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A   V+ + A  ++ V   ++        +L  H++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAAAENVDKEIAIYALNVALAVE-------LQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|320158663|ref|YP_004191041.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
 gi|319933975|gb|ADV88838.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 706

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A   V+ + A  ++ V   ++        +L  H++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAAAENVDKEIAIYALNVALAVE-------LQLKDHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS
Sbjct: 56  --VHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQS 96


>gi|294055877|ref|YP_003549535.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615210|gb|ADE55365.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 23/115 (20%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KN 74
           SL YP         VIKR+G  + +   +I++A+ KA          +S++++D      
Sbjct: 18  SLPYPL--------VIKRDGTHSPYSAERIAQAVYKA---------GQSMQIEDFAYAGQ 60

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +T     +L+   +    + + +IQ  VE  LM   H ++ R Y+ +R +R+  R
Sbjct: 61  VTAAVTAKLIGTQE----ICVTEIQKLVEDELMSGPHKELARAYIEFRHDRNVAR 111


>gi|322386564|ref|ZP_08060191.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
 gi|321269483|gb|EFX52416.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
          Length = 731

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G   +FD +KI +A+++A   +         +++ I   +  +  +R  ++  
Sbjct: 14  IYVEKRDGRRVAFDVTKIYKAMVRAAQDLGPMTPMLEAKLETITDRVVAEISSRFAKY-- 71

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 72  ----VKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|317471779|ref|ZP_07931118.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900756|gb|EFV22731.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 719

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G G       +DI   + E+        ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMRY--GSGVVDEKCAKDISFEIHEE--------HQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               + I  I+DQV   L+Q       + Y  YR+ R
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVR 87


>gi|167746967|ref|ZP_02419094.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
 gi|167653927|gb|EDR98056.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
          Length = 719

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G G       +DI   + E+        ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMRY--GSGVVDEKCAKDISFEIHEE--------HQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               + I  I+DQV   L+Q       + Y  YR+ R
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVR 87


>gi|309972792|gb|ADO95993.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2846]
          Length = 707

 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  AI KA  AV       +I  +     + ++    +  H++  
Sbjct: 6   VIKRDGSRAEFKIQRIINAIKKAASAV-------NISDEFYCHQIGQEVGNEIFIHHQGE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQ 100


>gi|213159194|ref|YP_002321238.1| gp45 [Caviid herpesvirus 2]
 gi|212598199|gb|ACJ35827.1| GP45 [Caviid herpesvirus 2]
 gi|324039490|dbj|BAJ78512.1| GP45 [Caviid herpesvirus 2]
          Length = 929

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 14/165 (8%)

Query: 631 VLDNVIDINCHTIEKAKKSNHTHR--AIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +LD++I  NC   E +K +    R  A+ + + GF  AL  L + Y S EAVE+  +  E
Sbjct: 642 MLDSMIK-NCGG-ESSKLAERFRRFAALAVNVTGFHKALMKLDVEYDSNEAVELCRKIHE 699

Query: 689 FISFHAISASVELAQERGAYSSFKG-SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            + + A+  S+ L +   +  ++ G +++ +G+   D        R  +         W 
Sbjct: 700 HVYYEALKTSMSLCRAGASACTWFGRTMYARGIMMFD--------RYSVTPTSVPTKHWI 751

Query: 748 ELKKRVKTIGMRNSNCMAIA-PTATIANICGVSQSIDPSYQNLYV 791
            L++ +   G+RN+   +   P   +  +   S SI P  +N Y+
Sbjct: 752 VLRQNIMRHGLRNAFITSCQDPEDGVCLMTEGSVSILPILKNHYI 796


>gi|257469813|ref|ZP_05633905.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064043|ref|ZP_07928528.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689719|gb|EFS26554.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
          Length = 748

 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQH 86
           ++VIKRNG + +F+  KI + + K           + ++  D   IK + +  V ++  H
Sbjct: 4   IEVIKRNGSIVTFNKEKIEKVLEK---------IDKEVKFIDKVTIKQMMDDIVIKINGH 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            +    + +E IQD V  +L  +G  +  + +  YR +R++ R  +++
Sbjct: 55  TR----MSVEAIQDIVFYTLCTNGLFEQAKAFQTYRTQRAEQRLKEAN 98


>gi|254459239|ref|ZP_05072661.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
 gi|207084132|gb|EDZ61422.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
          Length = 702

 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF        S +I     I          +L   K+ 
Sbjct: 5   ILKRDGTHKEFLSFKIEDAIKKAF-------KSENITYDSSI-------FFNVLDRLKNK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            +V +EDIQD +E  L +  +  + R ++LYR
Sbjct: 51  RVVAVEDIQDAIEKELYKGRYFDVMRSFILYR 82


>gi|330016521|ref|ZP_08308476.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
 gi|328528692|gb|EGF55652.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
          Length = 707

 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F+  +I  AI++A  A     A     V +++            Q  +   
Sbjct: 1   MKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQGRA 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQR 87


>gi|317493663|ref|ZP_07952084.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918606|gb|EFV39944.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 712

 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+++A         +++  V D     T   V  +   +   
Sbjct: 5   VIKRDGCQVPFDEQRIKEAVVRA---------AQAAGVDDTDYCATVARVVAMQMADLER 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + +H+  IQ+ VE  LM   + ++ R Y+ YR +R   R
Sbjct: 56  VDIHV--IQNAVENQLMAGNYKQLARAYIEYRHDRDVSR 92


>gi|293380785|ref|ZP_06626830.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
 gi|290922649|gb|EFD99606.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
          Length = 141

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P
Sbjct: 49  WEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQP 87


>gi|302336271|ref|YP_003801478.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
 gi|301320111|gb|ADK68598.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
          Length = 740

 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +++IKRNG    FD  KI  AI  A   V    +   R +R       L  +   +   H
Sbjct: 1   MKIIKRNGSEVQFDLEKIVNAINAANAEVTADERLTEREVR----FAALNVEDACKAAGH 56

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                 V +E+IQD VE  +M      + R+Y++YR
Sbjct: 57  T-----VTVEEIQDLVEDQIMALDRFAVARKYIIYR 87


>gi|459403|gb|AAC43383.1| ribonucleoside triphosphate reductase [Escherichia coli]
          Length = 229

 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++   +EQ   R    N+  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVV---SEQMQGR----NQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|295098395|emb|CBK87485.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 712

 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++ +           H +S
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSSQ---------MHERS 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
              V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 55  Q--VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 88


>gi|255522361|ref|ZP_05389598.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J1-175]
          Length = 148

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + E++    VIKR+G   +FD  KI  A+         + + ++I ++D  +   E+ + 
Sbjct: 2   YVEQLNEQMVIKRDGRKANFDLIKIRNAV---------EASMKAINLED--ETFLEEILL 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            ++    +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R
Sbjct: 51  EVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHER 98


>gi|157147776|ref|YP_001455095.1| anaerobic ribonucleoside triphosphate reductase [Citrobacter koseri
           ATCC BAA-895]
 gi|157084981|gb|ABV14659.1| hypothetical protein CKO_03580 [Citrobacter koseri ATCC BAA-895]
          Length = 707

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A     A     V +++ N          Q N+ + 
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSN----------QMNERSQ 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            V I +IQ  VE  LM   + ++ R Y+ YR +R
Sbjct: 51  -VDINEIQTAVENQLMSGPYKQLARAYIEYRHDR 83


>gi|212709921|ref|ZP_03318049.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
 gi|212687433|gb|EEB46961.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
          Length = 728

 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 11/104 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I  A+ +A  AV+ K     ++V  ++   +EQ     L H +  
Sbjct: 21  VIKRDGCQVNFDLPRIQEAVRRAAAAVDVKDDDYCLQVATVV---SEQ-----LCHREK- 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S 
Sbjct: 72  --VDIAEIQDAVENQLMSGPYKDLARAYIEYRHDRDSEREKRSQ 113


>gi|300362835|ref|ZP_07059006.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
 gi|300353071|gb|EFJ68948.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
          Length = 187

 Score = 38.5 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 24/149 (16%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLAND---------------------LKYERDFAF-EY 295
           +Y+E  ++ R+   + ++  L YL ++                     L Y ++F+F  +
Sbjct: 37  QYLENHIEPRMKKFASLEEKLAYLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNF 96

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +G    Y  Y L  N ++ +  + F  R  M         E+ A+     + S  F  +T
Sbjct: 97  MGAAKFYKAYALKTNDNK-QFLERFEDRAVMNALFLADGNEELALNLVKDIISNRFQPAT 155

Query: 356 PTLFNSG-TRHPQLSSCFLTTVPDDLYGI 383
           PT  N+G  R  +  SC+L  V D++  I
Sbjct: 156 PTFLNAGKKRRGEYISCYLLRVEDNMESI 184


>gi|291522482|emb|CBK80775.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 714

 Score = 38.5 bits (88), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG    FD +KI  A+  A   V+ +      ++Q +++  ++Q +        S 
Sbjct: 5   IIKRNGTKMDFDGTKIYNAVAAANAEVKPEHVLSEAQLQTVVEMASKQILA-------SE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E+IQD VE ++M    +++ + Y+ YR  R   R + +
Sbjct: 58  KDMSVEEIQDIVELAIMSVRGYEVAQHYIRYRHNRELARRSNT 100


>gi|218672028|ref|ZP_03521697.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 253

 Score = 38.1 bits (87), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 361 SGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEG 242


>gi|50286957|ref|XP_445908.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74610507|sp|Q6FV36|MED5_CANGA RecName: Full=Mediator of RNA polymerase II transcription subunit
           5; AltName: Full=Mediator complex subunit 5
 gi|49525214|emb|CAG58827.1| unnamed protein product [Candida glabrata]
          Length = 1099

 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 106 LMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMI 165
           L+++G + I  +YV+      +V     HS+      PKLK +M+ G LI F SK     
Sbjct: 84  LLENGKYVILADYVV------EVLFVNYHSELVREFLPKLKDLMNKGILIHFFSK----- 132

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
              +C+   +++  +V+S+  K++   +    LET     S  L+     + +   RF
Sbjct: 133 ---SCAFFVNLTDNLVISQLIKDLRATIVPCILETNFCDISNELVVAIAKFLQAVLRF 187


>gi|328480223|gb|EGF49146.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 206

 Score = 38.1 bits (87), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  AV+  + +    +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L+
Sbjct: 138 EDLAVDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELS 197

Query: 395 KYSGGLG 401
           +  GG+G
Sbjct: 198 RIGGGVG 204


>gi|163751120|ref|ZP_02158350.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
 gi|161329076|gb|EDQ00148.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
          Length = 705

 Score = 38.1 bits (87), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VIKR+G  T FD ++I  A++ A     +E K  + S+    + K + E           
Sbjct: 4   VIKRDGYRTPFDETRIRDAVVAAANSAGIEDKSYAVSV-AASVAKCVAEHAE-------- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + I ++QD VE  LM+  +  + R Y+ YR +R   R   S
Sbjct: 55  ----IDIHELQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSS 95


>gi|89097306|ref|ZP_01170196.1| gamma-glutamyltransferase [Bacillus sp. NRRL B-14911]
 gi|89088129|gb|EAR67240.1| gamma-glutamyltransferase [Bacillus sp. NRRL B-14911]
          Length = 562

 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           ++ + DP ++++ +K  +  D+      L+N  ++ D  D    +  KY DG    + R 
Sbjct: 316 IAFNTDPEFEDMPIKGLLHDDYIKERQKLINFERRNDAVD--FGNPWKYEDGEPKKVIRQ 373

Query: 838 PDDLKKIHATAFEIDPMW 855
           PDDL+K   T F +   W
Sbjct: 374 PDDLEKSETTHFTVRDQW 391


>gi|301792387|ref|XP_002931160.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 260

 Score = 38.1 bits (87), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 135 SKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYD 191
           S   AP  P  + ++  DG        ++   +++ C GL    V    +  +  + +Y 
Sbjct: 101 SNPSAPQPPATMHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYS 160

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G++  +L+T    ++ TL  + P+YA + AR  +  L +E         +K     M+ L
Sbjct: 161 GVTTVELDTLAAETAATLTTEHPDYAILAARIAVSNLHKET--------KKVFSDVMEDL 212

Query: 252 YPEYFCRYIEE--GVKARLLHESMMDFDLV---YLANDLKYERDFAFEYLGLQ 299
           Y      YI    G  + ++ +S +D  L     L + + Y+RDF++ Y G +
Sbjct: 213 Y-----NYINPHNGRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 260


>gi|271498937|ref|YP_003331962.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
 gi|270342492|gb|ACZ75257.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
          Length = 712

 Score = 38.1 bits (87), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A           V D     T           K+ 
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAASAAG---------VDDADYCATVAAAVAQQMQGKAR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q 
Sbjct: 56  --VDIREIQNAVENLLMAGQYKQLARTYIEYRHDRDVARERQG 96


>gi|213422935|ref|ZP_03355960.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 49

 Score = 37.7 bits (86), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K+
Sbjct: 2   WEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKA 49


>gi|46581351|ref|YP_012159.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601471|ref|YP_965871.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46450773|gb|AAS97419.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561700|gb|ABM27444.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311235010|gb|ADP87864.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 689

 Score = 37.7 bits (86), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G V ++   +++ AI KA  A           ++D +  L ++  +R+    + 
Sbjct: 4   KILKRDGRVETWSVDRVAHAINKALKASG---------IKDPL--LGKRLASRVEAKLED 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 E +QD V+  LM++  + +   Y++YRE+R ++R
Sbjct: 53  VDAPEQEHVQDMVQRVLMEARLYAVAERYIIYREKRREMR 92


>gi|15894492|ref|NP_347841.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15024132|gb|AAK79181.1|AE007634_11 Anaerobic ribonucleotide reductase [Clostridium acetobutylicum ATCC
           824]
 gi|325508623|gb|ADZ20259.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 699

 Score = 37.7 bits (86), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  +I  AI KA  ++E         + DI+  + E  + +       
Sbjct: 4   KVIKRDGREKDFDILRIEHAIKKAEKSIEVNECWDDDALCDILMKIDETNLKK------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              + IE +QD V   ++   +  + + Y  YR+ER+ +R  +S+
Sbjct: 57  ---IEIEKVQDIV-IDVLNKYNKNVAKAYSDYRKERTKIRQDKSN 97


>gi|145636719|ref|ZP_01792385.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
 gi|145270017|gb|EDK09954.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
          Length = 707

 Score = 37.7 bits (86), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     F+  +I  AI KA  AV       +I  +     + ++    +  H++  
Sbjct: 6   VIKRDSSRAEFEIQRIINAIKKAASAV-------NISDEFYCHQIGQEVGNEIFTHHQGE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S 
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQ 100


Searching..................................................done


Results from round 2




>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 1290 bits (3339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 954/954 (100%), Positives = 954/954 (100%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK
Sbjct: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL
Sbjct: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI
Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP
Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI
Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN
Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK
Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN
Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI
Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC
Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL
Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV
Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ
Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD
Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT
Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ
Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954


>gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 934

 Score = 1141 bits (2950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 712/937 (75%), Positives = 812/937 (86%), Gaps = 3/937 (0%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
           + YPFPEK+KG++VI+RNG  T FDPSKIS AIMKAF+AVEGK AS S RV++I+  LTE
Sbjct: 1   MTYPFPEKVKGIKVIRRNGKTTPFDPSKISWAIMKAFIAVEGKSASSSSRVRNIVNVLTE 60

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +TV +LL    S LI+HIE IQDQVE SLM++ HHK+ REYVLYREERS +R A++HSKS
Sbjct: 61  ETVLKLLHEYSSNLIIHIEAIQDQVEASLMRNDHHKVAREYVLYREERSGIRTAKAHSKS 120

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           D    P LKI MDD T +  +SKRL+MI+EE+C+GLQDVS +++LSET KNMYDG+SE +
Sbjct: 121 DT---PHLKIRMDDDTFVPLDSKRLKMIIEESCAGLQDVSLELILSETIKNMYDGMSEVE 177

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE AL+F+SR LIE+EPNYAKVT R LL+KLRREVLT +YK P+KATH EM  LY  YF 
Sbjct: 178 LELALVFASRALIEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFL 237

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +YIEEG+KA LL ESM +FDL YLAN LK +RD  FEYLGLQ LYDRYFLH++GSR EMP
Sbjct: 238 QYIEEGIKAHLLAESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMP 297

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMG+ALKE EKEKRAVEFYNL+SSFHFMCSTPTLFN+GTRHPQLSSCFLTTVP
Sbjct: 298 QAFFMRVAMGIALKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVP 357

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL  IF A+++NA+LAKYSGGLGNDWT VRGLG+HI GTNGKSQGVIPFLKVANDTAVA
Sbjct: 358 DDLGDIFEAIKDNALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVA 417

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +N 
Sbjct: 418 VNQGGKRKGAVCAYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNE 477

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSPDEV DLH LYG +FE AY NYE++A+RGEIK+FRKI+AV+LWRKMLTM+FETG
Sbjct: 478 QWTLFSPDEVGDLHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETG 537

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           HPWITFKDPCNIRSPQQHVG V  SNLCTEITLN S +E AVCNLGSINL AH   N  D
Sbjct: 538 HPWITFKDPCNIRSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLD 597

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           YDKLA+TI TAVR+LDNVID+N + I+KA+ SN  HR IGLGLMGFQSALH L IPY S 
Sbjct: 598 YDKLANTIHTAVRMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESV 657

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EAV+ AD+SMEFISFHAISAS  LA+ERG YS+FKGSLW +G+ PIDS+ LL EVRD+  
Sbjct: 658 EAVDFADQSMEFISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDKCE 717

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++++SRL WD L++RVK++GMRNSNCMAIAPTATI+NICGVSQSI+PSYQNL+VKSNMSG
Sbjct: 718 IDKSSRLGWDVLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSG 777

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DFT+VNS LVN+LK R LWDE MISDLK++DGSIGNIERIP+DLKK+HATAFEIDP+WLI
Sbjct: 778 DFTIVNSCLVNDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLI 837

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           ++ASRRQKWIDQAQSLNLYL +PSGKKLDFIYRQ+WLMGLKTTYYLRSRSAT VEKSTLK
Sbjct: 838 KAASRRQKWIDQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLK 897

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            VDGKLN+VP+ D NSS       SSC S  ECEVCQ
Sbjct: 898 EVDGKLNSVPIMDHNSSELLSTPQSSCDSGVECEVCQ 934


>gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans
           sp. BNC1]
          Length = 954

 Score = 1113 bits (2878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 606/944 (64%), Positives = 738/944 (78%), Gaps = 5/944 (0%)

Query: 14  AFPSLAYPFP---EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           A   +  P P   E     +VI+RNG VT FDPSKI+ A+ KAF+AVEG  A+ S RV +
Sbjct: 13  AAGPVFTPAPVEREAESAYRVIRRNGSVTPFDPSKIAIALTKAFLAVEGSVAAGSRRVHE 72

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           ++++LTEQ V  L + N++    HIE+IQDQVE +LM+ GHHK+ R YVLYREER+    
Sbjct: 73  VVEDLTEQVVGALTRRNEAGRTFHIEEIQDQVELALMRDGHHKVARAYVLYREERAR--E 130

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
             +   ++    P L++M++DG+    +  RL  +VEEAC GL+ VS++ +LSE  +N+Y
Sbjct: 131 RAATKTAENAAQPILQVMLEDGSKTPLDIARLTAVVEEACQGLEAVSAEAILSEAQRNLY 190

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++  +L  A I ++RTL+E EPNY++V+AR LL+KLRRE LT V  +P +AT  EM  
Sbjct: 191 DGITLDELSLAPILAARTLVETEPNYSQVSARLLLDKLRREALTFVEGRPTQATQAEMVE 250

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            YP YF  +I  G++A ++   +  FDL  L   LK ERD  F+YLG Q LYDRYFLH +
Sbjct: 251 RYPAYFEGFIAAGIQAEMIDPELGRFDLKRLGAALKPERDLRFQYLGFQTLYDRYFLHED 310

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G R E+PQAFFMRVAMGLAL+E ++E RA+EFY+L+S+F FMCSTPTLFN+GT  PQLSS
Sbjct: 311 GVRYELPQAFFMRVAMGLALREIDREARAIEFYDLISTFDFMCSTPTLFNAGTLRPQLSS 370

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFLTTV DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGA I GTNGKSQG++PFLKV
Sbjct: 371 CFLTTVSDDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGARIKGTNGKSQGIVPFLKV 430

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           ANDTA+AVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM
Sbjct: 431 ANDTAIAVNQGGKRKGAVCAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFM 490

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  WTLFSPDE  DLHDLYG  F+ AYE YE +A RGEI+VFR++ AV LWR+ML
Sbjct: 491 ERVEADGEWTLFSPDETPDLHDLYGPAFKAAYEEYEARAARGEIRVFRQVRAVDLWRRML 550

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           TMLFETGHPWITFKDPCN+RSPQ+H GVVHSSNLCTEITLN+S +E AVCNLGSINL AH
Sbjct: 551 TMLFETGHPWITFKDPCNLRSPQRHAGVVHSSNLCTEITLNTSKDEVAVCNLGSINLAAH 610

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +    D +KLA T+ TA+R+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ AL  L
Sbjct: 611 VSEKGLDMEKLARTVATAMRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFQDALQTL 670

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PYAS  AVE AD SME I++HAISASVELA+ERGAY+SF+GSLW +GV PIDS+  +A
Sbjct: 671 RLPYASEGAVEFADRSMEAIAYHAISASVELAKERGAYASFEGSLWSKGVLPIDSLSFVA 730

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E R    M+R + L W+ L+ RV   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+
Sbjct: 731 ESRGVDGMDRGTTLDWESLRARVVEHGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLF 790

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSNMSGDFTVVN+ LV++LK R LWDE M+SDLKY+DG +G I+R+PDDLK ++ATAFE
Sbjct: 791 VKSNMSGDFTVVNAALVHDLKARGLWDEVMVSDLKYYDGLLGQIDRVPDDLKALYATAFE 850

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDP WLIE+ASRRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSAT 
Sbjct: 851 IDPAWLIEAASRRQKWIDQAQSLNLYIANPSGKKLDELYRLAWRKGLKTTYYLRSRSATH 910

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           VEKSTLK  DGKLNAV V    ++    G+ +    D +CE CQ
Sbjct: 911 VEKSTLKRADGKLNAVAVMPQPAAFELEGVKACAIDDPDCEACQ 954


>gi|209885873|ref|YP_002289729.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
          Length = 969

 Score = 1110 bits (2871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 612/952 (64%), Positives = 738/952 (77%), Gaps = 13/952 (1%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P    P P +   +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV +I++ 
Sbjct: 19  SPESLAPSP-REPAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEIVEG 77

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT++ VT L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA   
Sbjct: 78  LTQEVVTNLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAAGKS 137

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           +++     P L++ + +GT    + KRLE+I+ EA  GL  V    VL+E  +N+YDG+S
Sbjct: 138 AEAAVSNEPALQMTLANGTRAPLDIKRLELIIREAGEGLDGVDPAPVLAEARRNLYDGIS 197

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           + +L  A I ++RTL+E EPNYA V+AR LL+KLR EVLT +YK P  A+  +M   Y E
Sbjct: 198 QDELALAPIMAARTLVEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYAE 257

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  Y++ G++A LL   +  FDL  LA+ LK ERD  F++LGLQ LYDRYFLH+ GSR+
Sbjct: 258 YFPVYVKAGIEAELLDPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSRL 317

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSCFLT
Sbjct: 318 ELPQAFFMRVAMGLAVREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLT 377

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL GIF A+++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDT
Sbjct: 378 TVADDLDGIFKAVKDNALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVANDT 437

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           A+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV 
Sbjct: 438 AIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVE 497

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  WTLFSPDE  DLHDLYG  F+ AYE YE +A RGEI VF+++ A  LWR+MLTMLF
Sbjct: 498 EDGTWTLFSPDETPDLHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTMLF 557

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINLL H    
Sbjct: 558 ETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTRE 617

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             ++DKL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  IP 
Sbjct: 618 GLNHDKLKRTIATAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIPI 677

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  AV  ADESME IS+HAISASV+LA ERG Y SF+GSLW QG+ PIDS+ +LA+ R+
Sbjct: 678 TSDAAVAFADESMEIISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKARN 737

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++ ++ L W  L++RVKT GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN
Sbjct: 738 GAPLDTSATLDWSGLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKSN 797

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSGDFTVVN FLV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++AT FEID  
Sbjct: 798 MSGDFTVVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDTS 857

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKS
Sbjct: 858 WLIQAAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKS 917

Query: 915 TLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           TLKG DGKLNAV           P+  PN +   L    +C+ D  +CE CQ
Sbjct: 918 TLKGTDGKLNAVSASIPSAQQHAPIVVPNDTAPDLTGVKACSIDNPDCEACQ 969


>gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase, subunit alpha [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 956

 Score = 1104 bits (2855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/942 (63%), Positives = 721/942 (76%), Gaps = 6/942 (0%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S   P        QVI+RNG VT FD SKIS A+ KAF+AVEG  A+ S RV + +  LT
Sbjct: 17  STGIPKATVDPVFQVIRRNGSVTPFDASKISVALTKAFLAVEGGRAAASRRVHETVDGLT 76

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q V  L +        HIE+IQDQVE +LM+  HHK+ R YVLYREER   RAA   + 
Sbjct: 77  SQIVVALTRRGVQERTFHIEEIQDQVELALMRGEHHKVARAYVLYREERKRERAA--ETA 134

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +  P  P + +   DG+L   ++ RL  ++EE+C+GL DVS++ +LSET +N+YDG++  
Sbjct: 135 APIPTMPSISVKSKDGSLAPLDAARLRKLIEESCAGLADVSAEAILSETQRNLYDGITRD 194

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L  A + ++RTLIE EPNY  VTAR L++KLRRE L+ V  +  +A   EM   YPEYF
Sbjct: 195 ELADAPVLAARTLIETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPEYF 254

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             +I +G+ A LL   +  FDL  L   LK ERD  F+YLGLQ LYDRYFL  +G R E+
Sbjct: 255 RAFIAKGIVADLLDPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRFEL 314

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQAFFMRVAMGLAL+E ++E +A+EFY+L+S+F FMCSTPTLFN+GT  PQLSSCFLTTV
Sbjct: 315 PQAFFMRVAMGLALREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLTTV 374

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL GIF ++++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA+
Sbjct: 375 PDDLDGIFKSIKDNALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTAI 434

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWHID+EEFLDLRKN GDDRRRTHDMNTA+WIPDLFM+RV ++
Sbjct: 435 AVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVAED 494

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSPDE  DLHDLYG  F   YE YE +A+R E+KV R++ AV LWR+MLTMLFET
Sbjct: 495 GQWTLFSPDETPDLHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLFET 554

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCN+RSPQQH G+VHSSNLC EITLN+S++E AVCNLGSINL+AH  N+  
Sbjct: 555 GHPWITFKDPCNLRSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTNDGV 614

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+DKL  T++TA+R+LDNVIDIN +TI +A++SN  HR +G+GLMGFQ AL  L I Y S
Sbjct: 615 DFDKLERTVKTAMRMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINYGS 674

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-E 735
            EAV  AD SME ISFHAISASV+LA ERG Y SF GSLW QG+ PIDSI LL   R  +
Sbjct: 675 EEAVAFADTSMEAISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARGTD 734

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           L ++ +S L WD L+ RV+T GMRNSN MAIAPTATI+NICGV+QSI+P+++NLYVKSNM
Sbjct: 735 LRLDTSSTLDWDGLRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKSNM 794

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDFTVVN FLV +LK R LWDE MISDLKY DGS+G I+RIP+DLK ++ATAFEID  W
Sbjct: 795 SGDFTVVNPFLVRDLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDAHW 854

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L+++A+RRQKWIDQ QSLNLY+  P+G+KLD +YR AW  GLKTTYYLRS+SAT VEKST
Sbjct: 855 LVDAAARRQKWIDQGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEKST 914

Query: 916 LKGVDGKLNAVPVTDPNSST---HSLGIPSSCTSDTECEVCQ 954
           LKG DGKLNAV  +  +S+     ++   +    D  CE CQ
Sbjct: 915 LKGTDGKLNAVSSSVHHSAPENIEAMAGKACLIDDPTCEACQ 956


>gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 960

 Score = 1098 bits (2839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/950 (62%), Positives = 733/950 (77%), Gaps = 9/950 (0%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D  PS+         G ++I+RNG VT FDP+KI+ A+ KAF+AVEG  A+ S R+ D++
Sbjct: 12  DRPPSVVEHVTAANPGYRLIRRNGTVTRFDPTKITLALTKAFLAVEGSSAASSRRIHDVV 71

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LT+Q V+ L +         IED+QDQVE +LM+  +HK+ R YVLYRE+R+  R   
Sbjct: 72  GGLTQQIVSSLTRRADLGHTFLIEDVQDQVELALMRGEYHKVARAYVLYREDRAKQRIES 131

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           + +    P +P L++   DG ++  ++ RL  +VEEAC+GL DV +  VLSET +N+YDG
Sbjct: 132 AQNAQLEPASP-LRVTATDGIVVPLDAVRLAAVVEEACAGLDDVRASQVLSETRRNLYDG 190

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++RTLIE EPNYAKV+AR LL+KLRRE L+ V  +P++ATH EM   Y
Sbjct: 191 ISLDELALAPILAARTLIETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRY 250

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  YI  G+ + LL   +  FDLV L+  LK ERD  F+YLGLQ LYDRYFLH++G+
Sbjct: 251 GDYFKAYIATGIASELLDRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGT 310

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA GLAL+E ++E +A+EFY LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 311 RFELPQAFFMRVACGLALREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCF 370

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN
Sbjct: 371 LTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 430

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFM R
Sbjct: 431 DTAIAVNQGGKRKGAVCAYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTR 490

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V Q+ GWTLFSPDE  DLHDL G+ F   YE YE +A+RGE++VF+++ A  LWRKMLTM
Sbjct: 491 VEQDGGWTLFSPDETPDLHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTM 550

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S+ E AVCNLGSINL+ H  
Sbjct: 551 LFETGHPWITFKDPCNLRSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLV 610

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N   D+ +LA ++ T +R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +
Sbjct: 611 NGAIDHARLARSVGTGMRMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRL 670

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS +AV  ADESME +S+ AISASV+LA ERG Y SF+GSLW +GV P+DSI  +   
Sbjct: 671 PYASEQAVAFADESMESVSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAA 730

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R+ RL WD L+ RVK +GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 731 RALPVEVDRSFRLDWDGLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYV 790

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN++LVN+LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 791 KSNMSGDFTVVNTYLVNDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEI 850

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLIE+A+RRQKWIDQ+QSLNLYL  P+GKKLD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 851 DSAWLIEAAARRQKWIDQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHV 910

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTH-------SLGIPSSCTSDTECEVCQ 954
           EKSTLKG DGKLNAV       +         ++   +    D  CEVCQ
Sbjct: 911 EKSTLKGTDGKLNAVSAGLAMDTPRAVAVACGAVAGQACAIDDPTCEVCQ 960


>gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 969

 Score = 1097 bits (2836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 602/951 (63%), Positives = 736/951 (77%), Gaps = 13/951 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVEG  A+ S RV DI+  LT
Sbjct: 19  SAAATAPSSEPACQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVTGLT 78

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R YVLYREER+  RA    SK
Sbjct: 79  DQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKAQESK 138

Query: 137 SDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           S    A      L++   DG+LI+ ++ RL  +VEEAC+GL DVS+  +L+ET++N+YDG
Sbjct: 139 SKKGGAAAAKAALRMKSADGSLIALDTPRLTAVVEEACAGLGDVSASAILTETHRNLYDG 198

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++RTL+E +P+YAKV+AR LL+K+RRE L+ V  + ++AT  EM   Y
Sbjct: 199 ISVDELAQAPILAARTLVETDPDYAKVSARLLLDKMRREALSFVAGRLEQATQAEMAERY 258

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+YLGLQ LYDRYFLH+   
Sbjct: 259 ADYFLSYVRAGIDHELLDPEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRSV 318

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 319 RFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 378

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN
Sbjct: 379 LTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 438

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R
Sbjct: 439 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQR 498

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE++V +++ AV LWR+MLTM
Sbjct: 499 VEEDGMWTLFSPDETPDLHDLTGKAFAGRYAYYEEKAARGELRVTKQVRAVDLWRRMLTM 558

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL+ H  
Sbjct: 559 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVNHIK 618

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +
Sbjct: 619 DGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGIMGFQDALNILRL 678

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS EAV  ADESME I++HAIS SVELA ERG Y S++GSLW +GV P+DS+ L+ E 
Sbjct: 679 PYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGSLWSKGVLPLDSLELVDEA 738

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R  E+ ++R+SRL WD L++RV TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 739 RGAEVDIDRSSRLDWDSLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYV 798

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 799 KSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATAFEI 858

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 859 DSAWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHV 918

Query: 912 EKSTLKGVDGKLNAVPVTD--------PNSSTHSLGIPSSCTSDTECEVCQ 954
           EKSTLKG DGKLNAV  +            ++ S G  S    D  CE CQ
Sbjct: 919 EKSTLKGTDGKLNAVAASVSVAPLNGHAAVASASEGWKSCRVDDPTCEACQ 969


>gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
 gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
          Length = 967

 Score = 1092 bits (2825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 609/945 (64%), Positives = 736/945 (77%), Gaps = 11/945 (1%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P P +   +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV + ++ LT++ 
Sbjct: 24  APSPSE-PAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEAVEQLTQEV 82

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           V  L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA   S + +
Sbjct: 83  VGTLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAADRASTTVS 142

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
              P L++ + +G  +  + KR E+I+ EAC GL  V    VL+E  +N+YDG+S+ +L 
Sbjct: 143 SNEPTLQMTLANGARVPLDLKRFELIIREACEGLDAVDPAPVLAEARRNLYDGISQDELA 202

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A I ++RTL+E+EPNYA V+AR LL+KLR EVL+ V+  P  A+  +M   Y EYF  Y
Sbjct: 203 LASIMAARTLVEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATRYAEYFPAY 262

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           I+ G++A LL   +   DL  LA+ LK ERD  F++LGLQ LYDRYFLH++G+RIE+PQA
Sbjct: 263 IKTGIEAELLDPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHGARIELPQA 322

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSCFLTTV DD
Sbjct: 323 FFMRVAMGLAMREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFLTTVADD 382

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GIF A+++NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLKVANDTA+AVN
Sbjct: 383 LDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVANDTAIAVN 442

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV Q+  W
Sbjct: 443 QGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEW 502

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSPDE  +LHDLYG  F+ AYE YE +A RGE++VF+++ A  LWR+MLTMLFETGHP
Sbjct: 503 TLFSPDETPELHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLTMLFETGHP 562

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           WITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGSINLL H      D +
Sbjct: 563 WITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTREGLDQN 622

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  IP AS  A
Sbjct: 623 KLKRTITTAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQRIPIASEAA 682

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           V  AD SME IS+HAISAS +LA ERG Y SF GSLW QG+ PIDS+ +L++ RD  A+N
Sbjct: 683 VAFADASMEIISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSKSRDGTALN 742

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +  L W  L++RV+  GMRNSN MAIAPTATI+NICGV+QSI+PSYQNL+VKSNMSGDF
Sbjct: 743 ASMTLDWTGLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFVKSNMSGDF 802

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN  LV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE+D  WLIES
Sbjct: 803 TVVNEHLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEVDTSWLIES 862

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT VEKSTLKG 
Sbjct: 863 AARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEKSTLKGT 922

Query: 920 DGKLNAV---------PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           DGKLNAV         P+  PN++   L    +C+ D  +CE CQ
Sbjct: 923 DGKLNAVSASGMLAHAPIIVPNATAPDLDGVKACSIDNPDCEACQ 967


>gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 956

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/951 (62%), Positives = 733/951 (77%), Gaps = 13/951 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVEG  A+ S RV DI+  LT
Sbjct: 6   SAAAAMPPSEPAYQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVAELT 65

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R YVLYREER+  RA    SK
Sbjct: 66  GQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKSQESK 125

Query: 137 S----DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +           L++   DG+LI+ ++KRL  +V EAC+GL DVS+  +L+ET++N+YDG
Sbjct: 126 AKKGNTTAAKTVLRMKSADGSLIALDTKRLATVVVEACAGLGDVSASAILAETHRNLYDG 185

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ V  + ++AT  EM   Y
Sbjct: 186 ISVDELALAPILAARTLVETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMAERY 245

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+YLGLQ LYDRYFLH+ G 
Sbjct: 246 ADYFRAYVRTGIDNELLDLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRGV 305

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 306 RFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 365

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN
Sbjct: 366 LTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 425

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R
Sbjct: 426 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRR 485

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE++V +++ AV LWR+MLTM
Sbjct: 486 VEEDGMWTLFSPDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRMLTM 545

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL++H  
Sbjct: 546 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVSHIK 605

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +
Sbjct: 606 DGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNILRL 665

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AV  ADESME I+++AIS SVELA ERG Y S++GSLW +G+ P+DS+ L+ E 
Sbjct: 666 PYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLVDEA 725

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R+SRL WD L++ V TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 726 RGAAVDIDRSSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYV 785

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 786 KSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEI 845

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 846 DSSWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHV 905

Query: 912 EKSTLKGVDGKLNAVPVTD--------PNSSTHSLGIPSSCTSDTECEVCQ 954
           EKSTLKG DGKLNAV  +           +++ S G  S    D  CE CQ
Sbjct: 906 EKSTLKGTDGKLNAVAASVSAAPLNGHATAASASEGWKSCRIEDPTCEACQ 956


>gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 966

 Score = 1088 bits (2813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/967 (60%), Positives = 738/967 (76%), Gaps = 14/967 (1%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M  + +  + +  + P+ A   P      QVI+RNG V+ FD SKI+ A+ KAF+AVEG 
Sbjct: 1   MSLATEAARAERPSLPA-AAAMPSSEPAYQVIRRNGSVSPFDSSKIAVALTKAFLAVEGN 59

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S RV DI+  LT+Q V  L + + +    HIEDIQDQ E +LM+S HHK+ R YVL
Sbjct: 60  SAAASRRVHDIVTELTDQIVASLTRRSDAGRTFHIEDIQDQAELALMRSAHHKVARAYVL 119

Query: 121 YREERSDVRAAQSHSKSDAPI----APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
           YREER+  RA    S +         P L++   DG++   +++RL  +VEEAC+GL+ V
Sbjct: 120 YREERARERAKAQESNAKKSNAAAATPALRMKSVDGSMAPLDTRRLAAVVEEACAGLEGV 179

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S++ +L+ET++N+YDG+S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ +
Sbjct: 180 SAEAILTETHRNLYDGISADELALAPILAARTLVETDPDYAKASARLLLDKLRREALSLI 239

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
             +P++AT  EM   Y EYF  Y++ G++  LL   +  FDL  LA  LK ERD  F+YL
Sbjct: 240 AGRPEQATQAEMTGRYAEYFLGYVQTGIENELLDPEIGRFDLDRLAAALKPERDLQFDYL 299

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G Q LYDRYFLH+ G+R E+PQAFFMRVA GLAL+E ++E +A+ FYNLLSSF FM STP
Sbjct: 300 GFQTLYDRYFLHVRGTRFELPQAFFMRVACGLALREIDREDKAIAFYNLLSSFDFMASTP 359

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFN+GT+  QLSSCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI G
Sbjct: 360 TLFNAGTQRAQLSSCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKG 419

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRT
Sbjct: 420 TNGESQGVVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 479

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PDLFM+RV ++  WTLFSP+E  DLHDL GK F   Y +YE +A RGE++V
Sbjct: 480 HDMNTANWVPDLFMQRVEEDGVWTLFSPNETPDLHDLTGKAFAERYAHYEGKAARGEMRV 539

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E
Sbjct: 540 TKQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTE 599

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGS+NL+ H  + + D+  LA T++TA+R+LDNV+++N +TI +A+ SN  HR +
Sbjct: 600 VAVCNLGSVNLVNHLHDGKLDHAHLARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPV 659

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGFQ AL++L +PYA  EAV  ADESME IS+ AIS SV+LA ERG Y S++GSLW
Sbjct: 660 GLGLMGFQDALNILRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLW 719

Query: 717 DQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            +G+ P+DS+ L+ E R   + ++R+SRL W+ L++RV T+GMRNSNCMAIAPTATI+NI
Sbjct: 720 SKGILPLDSLALVDEARGAPIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNI 779

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           CGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DG +  I+
Sbjct: 780 CGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRID 839

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           R+PDDLK ++ATAFEID  WLI++A+RRQKWIDQAQSLNLY+ +PSGKKLD +YR AW  
Sbjct: 840 RVPDDLKALYATAFEIDSAWLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKR 899

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCTSD 947
           GLKTTYYLRSRSAT VEKSTLK  DGKLNAV  +   +           S G  +    D
Sbjct: 900 GLKTTYYLRSRSATHVEKSTLKVTDGKLNAVSASVSTAPLNGHAASVAESDGWKACRIDD 959

Query: 948 TECEVCQ 954
             CE CQ
Sbjct: 960 PTCEACQ 966


>gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1]
          Length = 959

 Score = 1079 bits (2790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/959 (58%), Positives = 713/959 (74%), Gaps = 14/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+ P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAQVPQAA-DSNPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 RDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 185 QRETLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAD 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + 
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PLDSQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
 gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
          Length = 963

 Score = 1077 bits (2784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/963 (58%), Positives = 706/963 (73%), Gaps = 18/963 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P     +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQASAPQAA-DSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           RE R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 REARAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    +
Sbjct: 185 ERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAE 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLA++E ++E R +EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARTIEFYNLLSSFDYMSSTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + 
Sbjct: 484 ANWIPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PIDSEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 DLKDLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPV-------TDPNSSTHSLGIPSSCTSD-TECE 951
           TYYLR+ +ATS EKST+    GKLNAV           P +      +P +C+ D  +CE
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNPDCE 960

Query: 952 VCQ 954
            CQ
Sbjct: 961 ACQ 963


>gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida KT2440]
 gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
          Length = 959

 Score = 1075 bits (2781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/959 (58%), Positives = 712/959 (74%), Gaps = 14/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAQVPQAA-DSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 RDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 185 QRETLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAD 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + 
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PLDSQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida F1]
 gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida F1]
          Length = 959

 Score = 1075 bits (2780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/959 (58%), Positives = 712/959 (74%), Gaps = 14/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAQVPQAA-DSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 RDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 185 QRETLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAD 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I 
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PLDSQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
 gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
          Length = 959

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/959 (58%), Positives = 711/959 (74%), Gaps = 14/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAKVPQAA-DSQQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA +++S +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 RDQRAKERATRANSDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    +
Sbjct: 185 QRETLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAE 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+E+GV+  LL  ++  +DL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I 
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLPNHINDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + +N    L W  +++RVK  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PLDSQQILIEARGQKYIDVNLEESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida GB-1]
 gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida GB-1]
          Length = 959

 Score = 1074 bits (2777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/959 (58%), Positives = 710/959 (74%), Gaps = 14/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAKVPQAA-DSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 RDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 185 QRETLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAD 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I 
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HI Y S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 664 GFQDALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PLDSQQILIEARGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 974

 Score = 1073 bits (2775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/968 (61%), Positives = 725/968 (74%), Gaps = 24/968 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P   +   D                  QVI+R+G V+ FD SKI+ A+ KAF+AVEG  A
Sbjct: 15  PLSPLASAD-------VVAGAAHETSYQVIRRSGEVSPFDASKIAVALTKAFLAVEGSNA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV D +  LT+Q V  L +        HIEDIQDQ E +LM+S HHK+ R YV+YR
Sbjct: 68  AASRRVHDTVAELTDQIVANLTRRVGPGRTFHIEDIQDQAELALMRSEHHKVARAYVIYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           EER+  R A++ +    P+AP L+    DGTL   + +RL  I+ EAC+GL  VS   VL
Sbjct: 128 EERTRER-AKAAAAQVKPVAPALRTKSADGTLHLIDMQRLAAIIAEACAGLDGVSVDAVL 186

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+S+ +L  A I ++R  +E EP+YAKV+AR LL+KLRRE L+ V  +P +
Sbjct: 187 AETQRNLYDGISDDELALAPILAARIFVETEPDYAKVSARLLLDKLRREALSFVEGRPHQ 246

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M   Y +YF  Y++ G+   L+   +  FD+  LA  +K ERD  F+YLGLQ LY
Sbjct: 247 ATQAQMAERYADYFSAYVKAGIAHELIDPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLY 306

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH++G+R E+PQAFFMRVA G+AL+E ++E +A+EFY+LLSSF FM STPTLFN+G
Sbjct: 307 DRYFLHVHGTRFELPQAFFMRVACGIALREVDREAKAIEFYDLLSSFDFMASTPTLFNAG 366

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSCFLTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQ
Sbjct: 367 TLRPQLSSCFLTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQ 426

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTA
Sbjct: 427 GIVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTA 486

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NW+PDLFM+RV QN  WTLFSPDE  DLHDL G+ F   Y  YE +A RGE++V ++I A
Sbjct: 487 NWVPDLFMQRVEQNGPWTLFSPDETPDLHDLTGRAFAERYAFYEARAARGELRVTKQIRA 546

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
           V LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S  E AVCNL
Sbjct: 547 VDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEREVAVCNL 606

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL+ H  + + D  +L  T+ TA+R+LDNVID+N +TI +A+ SN  HR +GLGLMG
Sbjct: 607 GSVNLVNHVVDGRLDCARLERTVTTAMRMLDNVIDVNFYTIPEARASNLRHRPVGLGLMG 666

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL++L +PYAS EAV  ADESME I++ +ISASV+LA ERG Y+S+ GSLW QG+ P
Sbjct: 667 FQDALNILRLPYASDEAVAFADESMEAIAYWSISASVDLAAERGRYASYDGSLWSQGILP 726

Query: 723 IDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           +DSI LL E R   + ++R SRL W+ L+KRV   GMRNSN MAIAPTATI+NICGVSQS
Sbjct: 727 LDSIDLLDEARGAAIEVDRGSRLDWEALRKRVTATGMRNSNVMAIAPTATISNICGVSQS 786

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDL
Sbjct: 787 IEPAYQNLYVKSNMSGDFTVVNTHLVRDLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDL 846

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFEID  WLIE+A+RRQKWIDQAQSLNLYL  PSGK LD +YR AW  GLKTTY
Sbjct: 847 KALYATAFEIDATWLIEAAARRQKWIDQAQSLNLYLANPSGKTLDALYRLAWRRGLKTTY 906

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPV-------TDPNSS-------THSLGIPSSC-TS 946
           YLRSRSAT VEKSTL+G DGKLNAV          +P+ S         + G   +C   
Sbjct: 907 YLRSRSATHVEKSTLRGTDGKLNAVSAIILPTASAEPSRSNGAGNGHAATEGWGKACAID 966

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 967 DPGCEACQ 974


>gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
 gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
          Length = 961

 Score = 1071 bits (2769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/955 (58%), Positives = 714/955 (74%), Gaps = 12/955 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S  +          LA   P +   ++VIKRNG V +F+ SK+S AI KAF+AVEG  A+
Sbjct: 15  SNPIPTTSNPGASPLAATAPGQ---LRVIKRNGTVVAFEDSKVSVAITKAFLAVEGGTAA 71

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTEQ V    +   S   +HIEDIQDQVE +LM++G HKI R+YV+YRE
Sbjct: 72  ASSRIHETVAKLTEQVVATFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYRE 131

Query: 124 ERSDVRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            R+  RAA++    ++  A  ++ ++  DG+    + +R+  IV EAC GL DVS   ++
Sbjct: 132 ARAQERAAKAALSPESQQAAERINVVQADGSRSPLDIERVRTIVAEACEGLADVSEAAII 191

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+YDG++  ++ TAL+ ++RTLIE+EPNY+   AR LL+ LR E L+ +    + 
Sbjct: 192 DEALRNLYDGVAAEEVSTALVITARTLIEQEPNYSYAAARLLLDNLRAEGLSFM-GVAEL 250

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M   YP     +I+ G++  LL   + DFDL  L + L  ERD  F YLGLQ LY
Sbjct: 251 ATQQDMTIHYPAALKAFIKRGIELELLAPDLQDFDLEELGSALLPERDLQFSYLGLQTLY 310

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H + +R E+PQ FFMRVAMGLA +E  K  RA+EFY LLSSF +M STPTLFN+G
Sbjct: 311 DRYFIHSDNTRFELPQIFFMRVAMGLAAREEAKNARAIEFYRLLSSFDYMSSTPTLFNAG 370

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQ
Sbjct: 371 TLRPQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQ 430

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 431 GIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTA 490

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV  +  WTLFSP++V DLHDLYGK FE  Y+ YE  A  GE+K+ + + A
Sbjct: 491 NWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLKA 550

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            +LWRKML M+FETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNL
Sbjct: 551 QSLWRKMLGMIFETGHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCNL 610

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H  N   + DKL STIRTA+R+LDNVIDIN +++ +A++SN  HR IG+G+MG
Sbjct: 611 GSVNLPQHIENGVLNLDKLRSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVMG 670

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+ L + Y S +AV  AD+SME IS++AI AS ELA+ERG+YSS++GSLW QG+FP
Sbjct: 671 FQDALYKLDVAYGSDQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIFP 730

Query: 723 IDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            DS+ LL + R E  + +NR   + W  LK +V   GMRNSN MAIAPTATIANI GVSQ
Sbjct: 731 HDSLDLLIQHRGEDYIQVNRDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVSQ 790

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWD+ M++DLKY+DGS+  I+RIPDD
Sbjct: 791 SIEPTYQNLYVKSNLSGEFTVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPDD 850

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK  +ATAFE++P WL++SASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTT
Sbjct: 851 LKAKYATAFEVEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKTT 910

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           YYLRS +AT  EKST++   GKLNAV     +++     +P +C+  D +CE CQ
Sbjct: 911 YYLRSLAATGTEKSTVES--GKLNAVSSG--SATPQPAPVPQACSLDDPDCEACQ 961


>gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus
           capsulatus str. Bath]
 gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus
           capsulatus str. Bath]
          Length = 969

 Score = 1070 bits (2768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/969 (58%), Positives = 710/969 (73%), Gaps = 23/969 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P  D+      A      P       V+VI+RNG VT FD +KIS AI KAF+AVEG  
Sbjct: 8   RPLSDIPLDATSAELRSLSP-----GEVRVIRRNGKVTGFDAAKISVAITKAFLAVEGGN 62

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ + ++ LT+  V  LL+       +HIEDIQDQVE +LM++GH K+ R YVLY
Sbjct: 63  AAASRRIHESVEELTDLVVRALLRRLPGGGTIHIEDIQDQVELALMRAGHQKVARAYVLY 122

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           REER+ +R   Q+  K+       +++ ++DGT    ++ RL  +VEEAC GL DV    
Sbjct: 123 REERARLRAEKQNEGKAQGGAEDVVQVTLEDGTRKPLDTARLRHVVEEACRGLSDVEPAW 182

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++ ET +N++DG+ E ++   L+ ++RT IE+E NY+ V AR LL+ LRRE L+ +    
Sbjct: 183 IIEETRRNLFDGVPEKEVAPTLVMTARTRIEQESNYSYVAARLLLDALRREALSFLGHGA 242

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             AT  EM   Y EYF  Y++ GV+  LL   +  FDL  L   LK ERD  F YLGLQ 
Sbjct: 243 VSATQDEMSERYGEYFKDYVKRGVELELLSPELARFDLQRLGEALKPERDLQFNYLGLQT 302

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H    R E+PQAFFMRVAMGLA++E ++E+RA+EFY+LLSSF FM STPTLFN
Sbjct: 303 LYDRYFIHSGDIRFELPQAFFMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFN 362

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGK
Sbjct: 363 AGTLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGK 422

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMN
Sbjct: 423 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMN 482

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANW+PDLFMKRV +   WTLFSP++  DLHDL G+ FE  Y+ YE +ADRGEIK+++++
Sbjct: 483 TANWVPDLFMKRVAEEREWTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRL 542

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            AV LWRKML+MLFETGHPW+ FKDPCN+R   QH GVVHSSNLCTEITL+++  E AVC
Sbjct: 543 PAVQLWRKMLSMLFETGHPWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVC 602

Query: 601 NLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NLGS+NL AH   +   D +KL  TI T +R+LDNVIDIN +++ +A++SN  HR +GLG
Sbjct: 603 NLGSVNLAAHITPDGALDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGLG 662

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ AL+ L +PYAS EAV  AD SME +S++AI AS +LA ERG YSSF GSLW +G
Sbjct: 663 IMGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSRG 722

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + PIDSI LL E R   L M+R+  L W+ L++RV+T+GMRNSN MAIAPTATI+NICGV
Sbjct: 723 ILPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICGV 782

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNL+VKSN+SG+FTVVN +LV +LK   LWD  MI+DLKY+DGS+  IERIP
Sbjct: 783 SQSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERIP 842

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           + LK+++ATAFEID  WLIE+ SRRQKW+DQAQSLNLYL EPSGKKLD +Y+ AW+ GLK
Sbjct: 843 ETLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLK 902

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV-------------PVTDPNSSTHSLGIPSSCT 945
           TTYYLRS  AT VEKST    DGKLNAV             P+    + T      +   
Sbjct: 903 TTYYLRSLGATHVEKST--AFDGKLNAVKTDPIDDAIPGLRPLETVYADTRPAEPKACLI 960

Query: 946 SDTECEVCQ 954
            D  CE CQ
Sbjct: 961 DDPTCEACQ 969


>gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas
           entomophila L48]
          Length = 958

 Score = 1070 bits (2768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/959 (57%), Positives = 711/959 (74%), Gaps = 15/959 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P     + +  +   L    P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQALAPQAE--SNQDLTATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 63

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 64  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 123

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R++R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V  +++
Sbjct: 124 RDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGELI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 184 QRETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVAD 242

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+E+GV+  LL  ++  +DL  +   + +ERD  F YLGLQ L
Sbjct: 243 SATHHEMADLYAKALPAYVEKGVEFELLDPALKGYDLERMGKAINHERDQQFTYLGLQTL 302

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 303 YDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNA 362

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 363 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 422

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 423 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNT 482

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I 
Sbjct: 483 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQ 542

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 543 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 602

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 603 LGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIM 662

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ 
Sbjct: 663 GFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGIL 722

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P+DS  +L E R +  + ++ T  L W  +++RVK  G+RNSN MAIAPTATIANI GVS
Sbjct: 723 PLDSQQILIEARGQKYIDVDLTESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVS 781

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP 
Sbjct: 782 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQ 841

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 842 ELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT 901

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---IPSSCTSD-TECEVCQ 954
           TYYLR+ +ATS EKST+    GKLNAV     ++   + G   +P +C  D  +CE CQ
Sbjct: 902 TYYLRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 958


>gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PA7]
 gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Pseudomonas aeruginosa PA7]
          Length = 963

 Score = 1068 bits (2762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/963 (58%), Positives = 707/963 (73%), Gaps = 18/963 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P  +  +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQANAPQAA-DSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           RE R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 REARAAERKNAGATSDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    +
Sbjct: 185 ERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAE 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + 
Sbjct: 484 ANWIPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PIDSEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 DLKDLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSD-TECE 951
           TYYLR+ +ATS EKST+    GKLNAV     +              +P +C+ D  +CE
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCE 960

Query: 952 VCQ 954
            CQ
Sbjct: 961 ACQ 963


>gi|220935778|ref|YP_002514677.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 971

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 585/956 (61%), Positives = 725/956 (75%), Gaps = 8/956 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           + +V+   +     LA   P +     VI+RNG VT+FD SKI  AI KAF+AVEG  A+
Sbjct: 19  APEVSPESQVTAAELAATAPGQH---HVIRRNGKVTAFDASKIKVAITKAFLAVEGGNAA 75

Query: 64  RSIRVQDIIKNLTEQTVTRLLQH-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            S R+ DI+  L EQ    L +    SA+ VHIEDIQDQVE +LM+ GHHKI R YVLYR
Sbjct: 76  ASRRIHDIVAELAEQVCENLFRRAGGSAVTVHIEDIQDQVELALMRGGHHKIARAYVLYR 135

Query: 123 EERSDVRAAQSHSKSDAPIAP--KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           E+++  RAA++ ++  A  A    + +   DGT    ++ RL  +VEEAC+GL+ V  ++
Sbjct: 136 EQQAQKRAAEAATRKPARQAEAAVIHVTRPDGTRAPLDTARLVKVVEEACAGLEAVDGQL 195

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+E  +N++DG++E D+ TAL+ S+R LIEKEPNY++VTAR L++ LRRE L+ +   P
Sbjct: 196 ILNEAQRNLFDGVAEKDVGTALVMSARVLIEKEPNYSQVTARLLMDTLRREALSFIAGLP 255

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           Q AT  EM   YPEYF  Y++   +  LL   +  +DL  L   LK ERD  F YLGLQ 
Sbjct: 256 QAATQAEMTQRYPEYFKAYVKRAAELELLDSELTRYDLDRLGAALKPERDLQFTYLGLQT 315

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFN
Sbjct: 316 LYDRYFIHSGGVRFELPQAFFMRVAMGLAIHEIDREGRAIEFYNLLSSFDFMSSTPTLFN 375

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPDDL GIFGA+++NA+L+K++GGLGNDWT VRG+GAHI GTNGK
Sbjct: 376 SGTLRPQLSSCYLTTVPDDLDGIFGAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGK 435

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMN
Sbjct: 436 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHVDVEEFIELRKNTGDDRRRTHDMN 495

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           +ANWIPDLFMKRV +   WTLFSP+E  DLHDL G+ FE  Y  YE +A RGEIKVF+K+
Sbjct: 496 SANWIPDLFMKRVAEEGEWTLFSPNETPDLHDLVGEAFEQRYAEYEAKAARGEIKVFKKL 555

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            AV LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVC
Sbjct: 556 KAVDLWRKMLAMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVC 615

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL AH   N  + +KL  T+ TA+R+LDNVID N +++ +A++SN  HR +GLG+
Sbjct: 616 NLGSVNLAAHVDENGLNLEKLERTVSTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGI 675

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   IPYAS +AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QGV
Sbjct: 676 MGFQDALYQQRIPYASEDAVEFADRSMEAVSYYAIKASTDLAEERGRYQSFDGSLWSQGV 735

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LLA+ R + L  + +    WD L+ RVKT+GMRNSN MAIAPTATI+NICGVS
Sbjct: 736 LPIDSIELLAKSRGQYLQQDTSMTFDWDSLRDRVKTVGMRNSNTMAIAPTATISNICGVS 795

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNL+VKSN+SG+FTV+N  LVN+LK R LWDE M++DLKY+DGS+  I+R+P 
Sbjct: 796 QSIEPTYQNLFVKSNLSGEFTVINPNLVNDLKARKLWDEVMVNDLKYYDGSVQPIDRVPA 855

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ATAFE+D  WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKT
Sbjct: 856 DLKQLYATAFELDARWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKT 915

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  AT VEKST+           V   +++  +   P  C+  D ECE CQ
Sbjct: 916 TYYLRSMGATHVEKSTVADASRANKLNAVKGADAAAPATEAPKMCSILDPECEACQ 971


>gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO1]
 gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2]
 gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa LESB58]
 gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAb1]
 gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
 gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa PAO1]
 gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa LESB58]
 gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
          Length = 963

 Score = 1067 bits (2760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/963 (58%), Positives = 706/963 (73%), Gaps = 18/963 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P     +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQASAPQAA-DSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           RE R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++
Sbjct: 125 REARAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    +
Sbjct: 185 ERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAE 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + 
Sbjct: 484 ANWIPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCN
Sbjct: 544 AKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+M
Sbjct: 604 LGSINLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ 
Sbjct: 664 GFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGIL 723

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDS   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVS
Sbjct: 724 PIDSEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVS 782

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP 
Sbjct: 783 QSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQ 842

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKT
Sbjct: 843 DLKDLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSD-TECE 951
           TYYLR+ +ATS EKST+    GKLNAV     +              +P +C+ D  +CE
Sbjct: 903 TYYLRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCE 960

Query: 952 VCQ 954
            CQ
Sbjct: 961 ACQ 963


>gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
 gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
          Length = 958

 Score = 1066 bits (2756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/955 (58%), Positives = 705/955 (73%), Gaps = 14/955 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +  V++    A   +A   P +   ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+
Sbjct: 14  TSPVDRETAPAAGGIAATAPGQ---LRVIKRNGTVVPFEESKISVAITKAFLAVEGGTAA 70

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LT+Q      +   S   +HIED+QDQVE SLM++G HKI R+YV+YRE
Sbjct: 71  ASSRIHETVAKLTDQVAATFQRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYRE 130

Query: 124 ERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           E+S  RAA++    +   A   + ++  DG+ ++ +  RL  +V EAC  L+DV    +L
Sbjct: 131 EQSRKRAAKASLSQETQDAANGINVIQPDGSRVALDLDRLHTVVSEACFELEDVVESAIL 190

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  KN+YDG++  +L T+L+ ++RT+IE++PNY+ V AR L + LR E L+ +      
Sbjct: 191 DEALKNLYDGVTAEELATSLVITARTMIEQDPNYSYVAARLLCDNLRAEALSFLGVATN- 249

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M  LY +    YI  G++  LL  ++  +DL  L   L  ERD  F YLGLQ LY
Sbjct: 250 ATQADMGQLYAKALPAYIARGIELELLSPNLAGYDLQRLGEALLPERDLQFTYLGLQTLY 309

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H + +R E+PQ FFMRVAMGLA +E  +  RA+EFY LLSSF +M STPTLFN+G
Sbjct: 310 DRYFIHSDETRFELPQVFFMRVAMGLAAEEANRNDRAIEFYELLSSFDYMSSTPTLFNAG 369

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQ
Sbjct: 370 TLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQ 429

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMNTA
Sbjct: 430 GIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTA 489

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV     WTLFSP +V DLHDLYG  FE  Y +YE  A  GEIK+F+ + A
Sbjct: 490 NWIPDLFMKRVFNGEDWTLFSPSDVPDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKA 549

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 550 ENLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 609

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H   N  + +KL +T+RTAVR+LDNVIDIN +++ +AK SN  HR +GLGLMG
Sbjct: 610 GSVNLPQHIDENGLNLEKLRNTVRTAVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMG 669

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+  H+ Y S +AV  AD SME IS++AI AS ELA ERGAYSS++GSLW QGVFP
Sbjct: 670 FQDALYKQHLAYGSEQAVSFADHSMEAISYYAIEASSELAAERGAYSSYEGSLWSQGVFP 729

Query: 723 IDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           IDS+  L + R  D + +++T  + W  L+ +V+  GMRNSN MAIAPTATIANI GVSQ
Sbjct: 730 IDSLQRLIDERGADYIQVDQTESMDWQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQ 789

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LV +LK+R LWD  M++DLKY+DGS+  I+RIP D
Sbjct: 790 SIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPAD 849

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K I++TAFE++P WL+++ASRRQKWIDQAQSLNLY++  +GKKLD  YR AW  GLKTT
Sbjct: 850 IKGIYSTAFEVEPRWLVDAASRRQKWIDQAQSLNLYINNANGKKLDITYRMAWYSGLKTT 909

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           YYLRS +AT  EKST+    G LNAV     N +     +P +C+  D +CE CQ
Sbjct: 910 YYLRSLAATGTEKSTID--TGTLNAVS----NEAAGPAPVPQACSLDDPDCEACQ 958


>gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida W619]
 gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida W619]
          Length = 959

 Score = 1065 bits (2753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/954 (58%), Positives = 704/954 (73%), Gaps = 13/954 (1%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
           +     D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S 
Sbjct: 13  LAPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASS 69

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+
Sbjct: 70  RIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRA 129

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
             RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  ET 
Sbjct: 130 KERATRANTDAAVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETL 189

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHH
Sbjct: 190 KNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-NVADSATHH 248

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           EM  LY +    YI +GV+  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDRYF
Sbjct: 249 EMADLYAKALPAYIAKGVEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDRYF 308

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           +H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  P
Sbjct: 309 IHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRP 368

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+P
Sbjct: 369 QLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVP 428

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIP
Sbjct: 429 FLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIP 488

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LW
Sbjct: 489 DLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLW 548

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSIN
Sbjct: 549 RKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSIN 608

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ A
Sbjct: 609 LPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDA 668

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+L HIPY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+DS 
Sbjct: 669 LYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQ 728

Query: 727 GLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +L E R +  + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P
Sbjct: 729 QILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEP 787

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           +YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK +
Sbjct: 788 TYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDL 847

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR
Sbjct: 848 YATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLR 907

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPN----SSTHSLGIPSSCTSDTECEVCQ 954
           + +ATS EKST+    GKLNAV     +    ++  +    +    + +CE CQ
Sbjct: 908 ALAATSTEKSTIN--TGKLNAVSSGGDSAPAQAAGPAPVPKACAIDEPDCEACQ 959


>gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thioalkalivibrio sp. K90mix]
 gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 964

 Score = 1064 bits (2752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 572/952 (60%), Positives = 720/952 (75%), Gaps = 15/952 (1%)

Query: 15  FPSLAYPFPEKIKGV----QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +P  A P  E +       QVI+RNG VT FD SKI  A+ KAF+AVEG  A+ S R+ +
Sbjct: 16  YPPQAEPSAEVLATSPGQHQVIRRNGKVTGFDASKIEVAVTKAFLAVEGGNAAASRRIHE 75

Query: 71  IIKNLTEQTVTRLLQH-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + K +  Q V  L +      + VHIEDIQDQVE +LM+ GHHK+ R YV+YRE+++  R
Sbjct: 76  VSKEVAGQVVDSLFRRAGTQGMTVHIEDIQDQVELALMRGGHHKVARAYVIYREQQAQKR 135

Query: 130 AAQ--SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
           AA+    S  +   A  L +   DGT    +  RL+ +V EAC G++ V  + +L+E  +
Sbjct: 136 AAEAAEQSPEEQEAAAALNVTRADGTQAPLDEARLQAVVAEACDGIEHVDGEKILTEARR 195

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N++DG++E D+ TAL+ ++R +IEKEPNY++VTAR L++ LRRE L+ V+ +P++AT  +
Sbjct: 196 NLFDGVAEKDVATALVMAARVMIEKEPNYSEVTARLLMDALRREALSFVHGRPEEATQAQ 255

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           +   Y EYF  YI       L+   +  +DL  L   +K ERD  F YLGLQ LYDRYF+
Sbjct: 256 LAERYAEYFGAYIRRAADLELVDSELTRYDLDKLGAAIKPERDLQFTYLGLQTLYDRYFI 315

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H +G+R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQ
Sbjct: 316 HSDGTRFELPQAFFMRVAMGLAINEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQ 375

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LT+VPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGKSQGV+PF
Sbjct: 376 LSSCYLTSVPDDLDGIYSAIRDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPF 435

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF++LRKNTGDDRRRTHDMN+ANWIPD
Sbjct: 436 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFIELRKNTGDDRRRTHDMNSANWIPD 495

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV ++  WTLFSP+E  DLHDL G +FE  Y  YE +A RGE++V + + AV LWR
Sbjct: 496 LFMKRVAEDGDWTLFSPNETPDLHDLVGTDFEKRYCEYEEKAARGELRVHKTMKAVDLWR 555

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL
Sbjct: 556 KMLGMLFETGHPWMTFKDPCNLRSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSINL 615

Query: 608 LAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            AH     + D DKL  T+ TA+R+LDNVID N +++ +A++SN  HR +GLG+MGFQ A
Sbjct: 616 AAHINEAGELDQDKLEQTVNTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGIMGFQDA 675

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L +PYAS  AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QG+ PIDS+
Sbjct: 676 LYKLRMPYASEAAVEFADTSMEAVSYYAIKASTDLAEERGRYESFPGSLWSQGILPIDSV 735

Query: 727 GLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             LAE R + L M+ T RL WD+L+KRVK +GMRNSN MAIAPTATI+NICGVSQSI+P+
Sbjct: 736 EKLAETRGDYLQMDTTQRLEWDKLRKRVKKVGMRNSNTMAIAPTATISNICGVSQSIEPT 795

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           YQNL+VKSN+SG+FTV+N +LV +LK R+LWDE M++DLKY+DGS+  ++R+PDDLK ++
Sbjct: 796 YQNLFVKSNLSGEFTVINPYLVRDLKDRELWDEVMVNDLKYYDGSVQPLDRVPDDLKALY 855

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+D  WL+E+ASRRQKWIDQAQSLNLY+ EPSG KLD +Y+ AW+ GLKTTYYLRS
Sbjct: 856 ATAFELDTRWLVEAASRRQKWIDQAQSLNLYMAEPSGPKLDALYKLAWVRGLKTTYYLRS 915

Query: 906 RSATSVEKSTLKGVD--GKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
             AT VEKST+       KLNAV      S   +   P +C+  D +CE CQ
Sbjct: 916 MGATHVEKSTVADSSRANKLNAVSGGQQASEPEA---PKACSILDPDCEACQ 964


>gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
          Length = 955

 Score = 1064 bits (2751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/954 (58%), Positives = 713/954 (74%), Gaps = 14/954 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           P   +      + P+ ++  PE + + + VI+R+G V+ FDP KI+ A+ KA++AVEG  
Sbjct: 14  PEVTMPAQSAVSLPAESFEHPESRARDLHVIRRDGQVSGFDPGKITVAMTKAYLAVEGAN 73

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           AS S R+++ ++ L  Q V  L +   +   VHIEDIQDQVE +LM++G H++ R YVLY
Sbjct: 74  ASGSQRIRETVERLVGQVVEALTRRQPAGGRVHIEDIQDQVELALMRAGEHRVARAYVLY 133

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           REER+  R  Q  ++  A  A +L++   DG  +  +  RL  IVEE+C  +  V  + +
Sbjct: 134 REERARAR--QDQAEPVAAQAERLRVTRADGGQVPLDEARLRRIVEESCQRIAGVEPEAI 191

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET++N+YDG+ E++L TAL+  +RTLIE+EP Y+ V A  LL+ LRRE L+ +     
Sbjct: 192 VAETHRNLYDGIPEAELGTALVMCARTLIEREPGYSYVAAGLLLDTLRREALSFLGGVEA 251

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  EM   YP+YF  Y+  GV+  LL   +++FDL  LA  L+  RD  F YLGLQ L
Sbjct: 252 GATFEEMAKRYPDYFIAYVRRGVELELLDPRLLEFDLERLARVLEPARDRQFGYLGLQTL 311

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH +G+  E+PQAFFMRVAMGLAL E ++E+RA EFY LL+SF FM STPTLFN+
Sbjct: 312 YDRYFLHYDGTHFELPQAFFMRVAMGLALNEIDREERAAEFYRLLASFDFMSSTPTLFNA 371

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR PQLSSC+L+T+PDDL GI+ A+++NA+L+K++GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 372 GTRRPQLSSCYLSTIPDDLDGIYSAIRDNALLSKFAGGLGNDWTPVRALGAHIKGTNGRS 431

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGG+R+GAVCAYLE WH+D+EEFL+LRKNTGD+RRRTHDMNT
Sbjct: 432 QGVVPFLKVANDTAVAVNQGGRRRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNT 491

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFM+RV   A WTLFSPDE  DLHDLYG  FE  Y  YE QA+RGE++ ++++S
Sbjct: 492 ANWVPDLFMRRVIDEADWTLFSPDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVS 551

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AVALWR+ML+MLFETGHPWITFKD CN RSPQQH GVVHSSNLCTEITLN+S +E AVCN
Sbjct: 552 AVALWRRMLSMLFETGHPWITFKDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCN 611

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL AH      D  +L  T+RTA+R+LDNVIDIN +++ +A+++N  HR +GLG+M
Sbjct: 612 LGSVNLAAHVGAEGIDAARLERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVM 671

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L +PYAS EAV+ AD SME IS++AI AS ELAQERGAY+SF GSLW +G+ 
Sbjct: 672 GFQDALYRLGLPYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGIL 731

Query: 722 PIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PIDSI LLAE R E L M+ ++ L WD L++R++  GMRNSNC+AIAPTATIANI GVS 
Sbjct: 732 PIDSIRLLAEQRGEPLTMDTSTTLDWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSP 791

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+Y+NLYVKSN+SG+FTVVN  LV  LK R LWD  +++DLKY DGS+  IER+P+ 
Sbjct: 792 SIEPTYRNLYVKSNLSGEFTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEP 851

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ TAFEIDP WL+E+ASRRQKW+DQ+QSLNLY+ E SG KLD +YR AW  GLKTT
Sbjct: 852 IKALYTTAFEIDPNWLVEAASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKTT 911

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRS  AT VEKST+   DG LN V       +            D ECE CQ
Sbjct: 912 YYLRSLGATHVEKSTV--ADGALNRVAAAPAAPACA--------VDDPECEACQ 955


>gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
 gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
          Length = 967

 Score = 1063 bits (2749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/955 (58%), Positives = 709/955 (74%), Gaps = 13/955 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           + +V  G   +   ++   P +   ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+
Sbjct: 22  AANVASGVSASKAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAA 78

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTE       +   S   +HIED+QDQVE SLM++G HKI R+YV+YRE
Sbjct: 79  ASSRIHETVAKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYRE 138

Query: 124 ERSDVRAAQSHSKSDAPIA-PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           +++  RAA+    ++   A  ++ ++  DG+    + +RL +IV EAC+GL+DVS   +L
Sbjct: 139 QQAVKRAARQSLSAETQQAADRINVVQLDGSKAPLDLERLHIIVSEACAGLEDVSESRIL 198

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+YDG+S  +L T+L+ ++RTLIE+EPNY   +AR L + LR E LT +    + 
Sbjct: 199 DEALRNLYDGVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEALTFL-GVAES 257

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M   YP+    YI+ GV+  LL  ++ D+DL  L   +  ERD  F YLGLQ LY
Sbjct: 258 ATQGDMDRYYPQALSAYIKRGVELELLDPTLADYDLEQLGAAILPERDLQFTYLGLQTLY 317

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H +  RIE+PQ FFMRVAMGLA++E  +E RA+EFY LLSSF +M STPTLFN+G
Sbjct: 318 DRYFIHSDEVRIELPQIFFMRVAMGLAVEEEHREARAIEFYRLLSSFDYMSSTPTLFNAG 377

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 378 TLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQ 437

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTA
Sbjct: 438 GVVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTA 497

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV  +  WTLFSP++V DLHDLYGK FE  Y  YE  A  GEIK  + + A
Sbjct: 498 NWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYNTYEAMAANGEIKNHKTVKA 557

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNL
Sbjct: 558 QNLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNL 617

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H   N  + +KL  T+RTAVR+LDNVIDIN ++++ A+ SN  HR +GLGLMG
Sbjct: 618 GSINLPQHIDENGLNLEKLEQTVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMG 677

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+  HI Y S  AVE AD SME IS++AI AS  LA ERGAYSS++GSLW QG+ P
Sbjct: 678 FQDALYKQHIAYGSDAAVEFADRSMEAISYYAIDASSSLAAERGAYSSYEGSLWSQGILP 737

Query: 723 IDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           IDS+  L + R  D + ++ T+ L W+ L+  VK  GMRNSN MAIAPTATIANI GVSQ
Sbjct: 738 IDSLSKLVDERGSDYIKVDSTTTLDWESLRTSVKARGMRNSNVMAIAPTATIANITGVSQ 797

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LVN+LK R LWD  M++DLKY+DGS+ +IERIP D
Sbjct: 798 SIEPTYQNLYVKSNLSGEFTVVNPYLVNDLKARGLWDSVMVNDLKYYDGSVQSIERIPAD 857

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           L+ I++ AFE++P W++E ASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTT
Sbjct: 858 LRAIYSNAFEVEPKWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTT 917

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           YYLRS +AT  EKST+    G+LNAV     ++      +P +C+  D +CE CQ
Sbjct: 918 YYLRSLAATGTEKSTI--ATGQLNAVSS---SAEPQPAPVPQACSLDDPDCEACQ 967


>gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Halothiobacillus neapolitanus c2]
 gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halothiobacillus neapolitanus c2]
          Length = 957

 Score = 1061 bits (2744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/950 (58%), Positives = 702/950 (73%), Gaps = 9/950 (0%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
                  A  S           ++VI+RNG VT+FD SKI  A+ KAF+AVEG GA+ S+
Sbjct: 15  TAHSAPSAAHSTIDTAATTPGQLRVIRRNGKVTAFDDSKIKVAMTKAFLAVEGSGAAVSM 74

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           RV D++  L++Q  + L +       VHIEDIQDQVE +LM+ GHHK+ R YVLYRE ++
Sbjct: 75  RVHDLVNALSDQISSALKRRAPGGGTVHIEDIQDQVELALMREGHHKVARAYVLYREHQA 134

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
             RAA++  ++   I   L +   DGT    +  RL  ++ EACS L DV    VL ET 
Sbjct: 135 QKRAAEAPDQATPEI--VLNVTHADGTRSPLDHVRLNALIGEACSNLTDVDPNAVLQETL 192

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +N++DG+ E ++ TAL+ S+RTLIEK+PNY+ V AR LL+ +R E L    +     T  
Sbjct: 193 RNLFDGVPEKEVNTALVMSARTLIEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCTQS 252

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           E+  L+ +YF  YI  G++  LL  ++  +D+  L + +   RD  F YLGLQ LYDRYF
Sbjct: 253 ELSGLFADYFQSYINTGIEHELLDPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDRYF 312

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LH  G R E+PQAFFMRVAMGLA+ E ++E  A+EFY LLSSF FM STPTLFNSGT  P
Sbjct: 313 LHEGGVRFELPQAFFMRVAMGLAINEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTLRP 372

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSC+LTTVPDDL GIF A+++NA+L+K++GGLGNDW+ VR L +HI GTNGKSQGV+P
Sbjct: 373 QLSSCYLTTVPDDLDGIFAAIKDNALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGVVP 432

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+P
Sbjct: 433 FLKVANDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANWVP 492

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV +   WTLFSP +  DLHDL G  FE AY  YE + DRGE+K FR+I A  LW
Sbjct: 493 DLFMKRVMEEGEWTLFSPADCPDLHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATNLW 552

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RKML+MLFETGHPWITFKDPCN+R   QH GVVHSSNLCTEITL+++ +E AVCNLGS+N
Sbjct: 553 RKMLSMLFETGHPWITFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGSVN 612

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L  H   N  D +KLA TI+TA+R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ A
Sbjct: 613 LAQHVTENGLDQEKLARTIKTAMRMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQDA 672

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           LH+  IPY+S +A+E AD SME +S++AISAS +LA ERG Y SF+GSLW +G+ PIDSI
Sbjct: 673 LHIQKIPYSSEQAIEFADRSMETVSYYAISASSDLAAERGRYQSFEGSLWSRGILPIDSI 732

Query: 727 GLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LLAE R + L MNR + L W+ ++ ++K  GMRNSN MAIAPTATI+NICGV+QSI+P+
Sbjct: 733 DLLAEARGKYLVMNRDTTLDWEAVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIEPT 792

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           ++NL+VKSN+SG+FTV+N +LV +LK  DLWDE M++DLKY DGS+  I+RIPD LK ++
Sbjct: 793 FENLFVKSNLSGEFTVINPYLVRDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKALY 852

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE++P WLIE+ SRRQKWIDQAQSLNLYL +PSG KLD +Y+ AWL+GLKTTYYLR+
Sbjct: 853 ATAFEVEPRWLIEAGSRRQKWIDQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYLRA 912

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
            S T VEK+T+  +DGKL  V     ++   +  +P +C   D  CE CQ
Sbjct: 913 SSKTRVEKTTMTKLDGKLRGV-----SADPIAEALPKACAIDDPGCEACQ 957


>gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina ymp]
 gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           mendocina ymp]
          Length = 968

 Score = 1058 bits (2737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/969 (57%), Positives = 713/969 (73%), Gaps = 25/969 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P     +G  D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAVAPQGA-DSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           RE +++ R A + S+   P  P ++I   DG+L   +  RL+ I+ EAC GL +V   ++
Sbjct: 125 REAQANKRKASAGSEIAQP-HPSIRITAADGSLQPLDMGRLQTIIREACEGLAEVDGALI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E LT +    Q
Sbjct: 184 ERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALTFL-GITQ 242

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+++GV+  LL   + ++DL  L   L +ERD  F YLGLQ L
Sbjct: 243 SATHHEMVDLYAKALPAYVDKGVEFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTL 302

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFN 360
           YDRYF+H +G R E+PQ FFMRVAMGLA++E + +E RA+EFYNLLSSF +M STPTLFN
Sbjct: 303 YDRYFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFN 362

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 363 AGTLRPQLSSCYLTTVPDDLSGIYSAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGK 422

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 423 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 482

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV ++  WTLFSP EV DLHDL GK FE  YE YE   + G+IK+++ I
Sbjct: 483 TANWIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTI 542

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 543 QAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 602

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL+ H  + + D +KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLGL
Sbjct: 603 NLGSVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGL 662

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HI Y S  A+E AD SME IS++AI AS +LA+ERGAYS+F+GSLW +G+
Sbjct: 663 MGFQDALYLQHIAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGI 722

Query: 721 FPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  +L E R +  + ++ +  L W  L++RVK  G+RNSN MAIAPTATI+NI GV
Sbjct: 723 LPLDSQQILIEARGQKYIDVDLSESLDWAPLRERVKK-GIRNSNIMAIAPTATISNIIGV 781

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP
Sbjct: 782 SQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIP 841

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 842 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 901

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------STHSLGIPSSCT 945
           TTYYLR+ +ATS EKST+    GKLNAV                       +    +   
Sbjct: 902 TTYYLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAI 959

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 960 DEPDCEACQ 968


>gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf0-1]
 gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 964

 Score = 1058 bits (2735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/964 (57%), Positives = 705/964 (73%), Gaps = 19/964 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   + +   D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQGTLPQAA-DSNSDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R+ RS  RA ++ +++     P ++I   DG+L   +  RL  IV EAC GL +V   ++
Sbjct: 125 RDARSKERATRTTAEAPVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    +
Sbjct: 185 QRETLKNLYDGVALNDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVAE 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+ +G++  LL+  +  FDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYVAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKI 540
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE      G+IK+F+ I
Sbjct: 484 ANWIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 544 QAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 603

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL  H  + + D  KL  TI  AVR+LDNVIDIN +++ +AK SN  HR +GLG+
Sbjct: 604 NLGSINLPNHIVDGKLDTAKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGI 663

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERG+Y +F+GSLW +GV
Sbjct: 664 MGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGV 723

Query: 721 FPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  +L E R +  + ++ T  L W  ++ RV+  G+RNSN MAIAPTATIANI GV
Sbjct: 724 LPLDSQQILIEARGQKYIDVDLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGV 782

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP
Sbjct: 783 SQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIP 842

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 843 QELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 902

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL--------GIPSSCTSDTEC 950
           TTYYLR+ +ATS EKST+    GKLNAV     +     L           +    + +C
Sbjct: 903 TTYYLRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDC 960

Query: 951 EVCQ 954
           E CQ
Sbjct: 961 EACQ 964


>gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
 gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
          Length = 963

 Score = 1057 bits (2734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/963 (57%), Positives = 703/963 (73%), Gaps = 18/963 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQGSVPQAA-DSNMDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGN 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R+ R+  RA  + +       P ++I + DG+    +  RL  I+ EAC GL++V   ++
Sbjct: 125 RDSRAKERAVHAPAAEAVQAHPSIRITLADGSFAPLDLGRLNTIITEACEGLEEVDGDLI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +     
Sbjct: 185 QRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVAD 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    YI +G++  LL+  +  FDL  L   + +ERD  F YLGLQ L
Sbjct: 244 SATHHEMADLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H +G R E+PQ FFMRVAMGLA++E  KE RA+EFYNLLSSF +M STPTLFN+
Sbjct: 304 YDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKI 540
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE  A   G+IK+F+ I
Sbjct: 484 ANWIPDLFMKRVFDDGQWTLFSPSEVPDLHDLTGKAFEERYEYYEALAQYPGKIKLFKTI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 544 QAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 603

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL  H  N + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+
Sbjct: 604 NLGSINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGI 663

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+
Sbjct: 664 MGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGI 723

Query: 721 FPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GV
Sbjct: 724 LPLDSQQILIEQRGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGV 782

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP
Sbjct: 783 SQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIP 842

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 843 QELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 902

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECE 951
           TTYYLR+ +ATS EKST+    GKLNAV   +    +        +    +    + +CE
Sbjct: 903 TTYYLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCE 960

Query: 952 VCQ 954
            CQ
Sbjct: 961 ACQ 963


>gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 964

 Score = 1057 bits (2732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/955 (59%), Positives = 717/955 (75%), Gaps = 10/955 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +  V      +   L    P +   ++VIKRNG VTSF+ SKIS AI KAF+AVEG  A+
Sbjct: 16  TAPVTGTGNTSSGRLQATAPGQ---LRVIKRNGTVTSFEDSKISVAITKAFLAVEGGTAA 72

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTEQ +T   +   S   +HIEDIQDQVE +LM++G HKI R+YV+YRE
Sbjct: 73  ASSRIHETVAKLTEQVITTFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYRE 132

Query: 124 ERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ER+  RAA++    ++  A   + ++M DG+    N +R+  IV EAC+ L DVS   ++
Sbjct: 133 ERARDRAAKAALSPESQAAASGINVVMPDGSREPLNIERVRTIVSEACADLVDVSESAII 192

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+YDG++  ++ T+L+ ++RT+IE++PNY+ V AR LL+ LR E L  +    + 
Sbjct: 193 DEALRNLYDGVTADEVSTSLVITARTMIEQDPNYSYVAARLLLDNLRAESLNYL-GVAKS 251

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M  LY E    +I +GV   LL   +++FD+  L   L  ERD  F YLGLQ LY
Sbjct: 252 ATQSDMAQLYSEALSAFIHQGVTLELLSPELLEFDIAALGQALLPERDLQFSYLGLQTLY 311

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H +  RIE+PQ FFMRVAMGL+++E +   RA+EFY LLSSF +M STPTLFNSG
Sbjct: 312 DRYFIHADEVRIELPQVFFMRVAMGLSIREDDPNTRAIEFYQLLSSFDYMSSTPTLFNSG 371

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 372 TLRSQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQ 431

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 432 GIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 491

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV ++  WTLFSP++V DLHDLYG+ FE  Y  YE  A  GEI+V + + A
Sbjct: 492 NWIPDLFMKRVFEDGDWTLFSPNDVPDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKA 551

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            A+WRKML M+FETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNL
Sbjct: 552 QAVWRKMLGMIFETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNL 611

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H  + + +  KL +T+RTA+R+LDNVIDIN +++ +A++SN  HR IGLG+MG
Sbjct: 612 GSVNLPQHIEDGKLNLKKLRATVRTAIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMG 671

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+ + + YAS  AV  AD+SME +S+ AI AS ELA ERGAYSS++GSLW QGVFP
Sbjct: 672 FQDALYKIDVSYASKGAVSFADQSMEAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFP 731

Query: 723 IDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS+ +L E R    + +NR     W ELK RV   GMRNSNCMAIAPTATIANI GVSQ
Sbjct: 732 LDSLDILVEQRGANYIEVNRDMTFDWPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQ 791

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LV +LK RDLWD+ M++DLKY DGS+ +I+RIPDD
Sbjct: 792 SIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDD 851

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK  ++TAFEI+P WL++SASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTT
Sbjct: 852 LKAKYSTAFEIEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKTT 911

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           YYLRS +AT  EKST++   GKLNAV      S+     +P +C+  D +CE CQ
Sbjct: 912 YYLRSLAATGTEKSTVES--GKLNAVASGAAESTPQPAPVPQACSLDDPDCEACQ 964


>gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 970

 Score = 1056 bits (2731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 699/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +  ++      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAGR-ATEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVAESAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLADFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 963

 Score = 1056 bits (2730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/960 (57%), Positives = 705/960 (73%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+ P L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QGTAPLAADSNPDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +S + +     P ++I   DG+L   +  RL  IV EAC GL++V   ++  E
Sbjct: 128 RAKERATRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L+ + +  + AT
Sbjct: 188 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFL-EVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMVDLYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IK+F+ + A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLD 726

Query: 725 SIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L   R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIAQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           +++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 ELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL--------GIPSSCTSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV     +     L           +    + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 970

 Score = 1056 bits (2730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|298487944|ref|ZP_07005983.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 970

 Score = 1055 bits (2729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/968 (57%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 970

 Score = 1055 bits (2729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 698/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRT-PEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter
           turnerae T7901]
 gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I
           [Teredinibacter turnerae T7901]
          Length = 961

 Score = 1055 bits (2729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/958 (59%), Positives = 720/958 (75%), Gaps = 12/958 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+  V + +  +  S+A   P +   ++VIKRNG +  +   KI+ A+ KAF+AVEG  A
Sbjct: 10  PTSPVPQANPHSNSSIANAAPGQ---LRVIKRNGTLVPYTDDKIAVAMTKAFLAVEGGTA 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + + NLT+Q      +   S   +HIE+IQDQVE +LM++G HK+ R+YVLYR
Sbjct: 67  AASSRIHETVANLTQQISATFKRRMPSGGTIHIEEIQDQVELTLMRTGEHKVARDYVLYR 126

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            ER+ +RA +          P++ ++  DG+L   +  RL  +V EAC+GL+DV  + +L
Sbjct: 127 AERAKLRAEKEKLSQANVDFPEINVLQPDGSLQPLDVMRLHTVVSEACAGLKDVDGEAIL 186

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+Y+G+S  DL T+L+ S+RTL+EKEPNY   TAR L++KLR E L  +     +
Sbjct: 187 KEAMRNLYEGVSAEDLNTSLVISARTLVEKEPNYTYATARLLMDKLRAEALAFL-DVATQ 245

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  EM+  YP     YI  G++  LL  ++ DFDL  L   L  ERD  F YLGLQ LY
Sbjct: 246 ATSAEMEMFYPNALPAYISRGIELELLDPALADFDLQLLGAALIPERDQQFTYLGLQTLY 305

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH +G+R E+PQ FFMRVAMGLA++E +K  RA+EFY LLSSF +M STPTLFN+G
Sbjct: 306 DRYFLHSDGTRFELPQIFFMRVAMGLAMREDDKNGRAIEFYRLLSSFDYMSSTPTLFNAG 365

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LT+VPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 366 TLRPQLSSCYLTSVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQ 425

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKVANDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 426 GVVPFLKVANDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTA 485

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NW+PDLFMKRV ++  WTLF+P  V DLHDL+G  FE  YE+YER+A  G IK F+K+ A
Sbjct: 486 NWVPDLFMKRVFEDKEWTLFTPSTVPDLHDLFGLAFEERYEHYEREAAAGNIKPFKKVRA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCN 601
           V LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ ++EE AVCN
Sbjct: 546 VDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCN 605

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D +KL  ++ TAVR+LDNVIDIN ++++ A+ SN  HR +GLG+M
Sbjct: 606 LGSINLAQHVVDGKLDQEKLQRSVDTAVRMLDNVIDINYYSVDTARNSNLRHRPVGLGIM 665

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ + IPY+S  AVE AD SME +S++AISAS  LA ERG+YS+F+GSLW QGV 
Sbjct: 666 GFQDALYKMRIPYSSAAAVEFADRSMEAVSYYAISASSALASERGSYSTFEGSLWSQGVL 725

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI LLA+ R E  +  ++T+ L WD L+  VKT GMRNSN MAIAPTATIANI GVS
Sbjct: 726 PIDSIQLLAKNRGEQFIEQDQTTTLDWDTLRNTVKTQGMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD  M++DLKY++GS+  I+RIPD
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPD 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++P W++++ASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GLKT
Sbjct: 846 DLKLLYATAFEVEPRWIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYRMAWYRGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCT-SDTECEVCQ 954
           TYYLR+ +AT+ EKST+    G LNAV    P  N S     +P +C+  D +CE CQ
Sbjct: 906 TYYLRALAATTTEKSTID--TGSLNAVSSGAPAANISAGPADVPKACSLDDPDCEACQ 961


>gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 970

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/968 (57%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQAQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|28868877|ref|NP_791496.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 970

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQAQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAGR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae Cit 7]
          Length = 970

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/968 (57%), Positives = 696/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 970

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 696/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens SBW25]
 gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens SBW25]
          Length = 964

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/964 (57%), Positives = 706/964 (73%), Gaps = 19/964 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P   V +   D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQGSVPQAA-DSNLDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDA-PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           R+ R+  RA ++ ++  A    P ++I + DGT    +  RL  I+ EAC GL++V   +
Sbjct: 125 RDSRAKERAVRTPAEEAAVQAHPSIRITLADGTFAPLDLGRLNTIITEACEGLEEVDGDL 184

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  ET KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    
Sbjct: 185 IQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVA 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ATHHEM  LY +    YI +G++  LL+  +  FDL  L   + +ERD  F YLGLQ 
Sbjct: 244 DSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H +G R E+PQ FFMRVAMGLA++E  KE RA+EFYNLLSSF +M STPTLFN
Sbjct: 304 LYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 364 AGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRK 539
           TANWIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE  +   G+IK+F+ 
Sbjct: 484 TANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFEERYEYYEALSQYPGKIKLFKT 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AV
Sbjct: 544 IQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAV 603

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL  H  N + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG
Sbjct: 604 CNLGSINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLG 663

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G
Sbjct: 664 IMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKG 723

Query: 720 VFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           + P+DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI G
Sbjct: 724 ILPLDSQQILIEQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITG 782

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERI
Sbjct: 783 VSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERI 842

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GL
Sbjct: 843 PQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL 902

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTEC 950
           KTTYYLR+ +ATS EKST+    GKLNAV   +    +        +    +    + +C
Sbjct: 903 KTTYYLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDC 960

Query: 951 EVCQ 954
           E CQ
Sbjct: 961 EACQ 964


>gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato K40]
 gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
          Length = 970

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQAQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAGR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGRAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 970

 Score = 1054 bits (2726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 698/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G      +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQPSQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRT-PEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE+YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEHYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 970

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 696/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri A1501]
 gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501]
          Length = 961

 Score = 1054 bits (2725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/954 (57%), Positives = 705/954 (73%), Gaps = 21/954 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  
Sbjct: 15  APDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVAR 71

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE ++  R + S 
Sbjct: 72  LTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASG 131

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           S   A   P +++   DG+    +  RL+ I+ EAC GL +V   ++  ET KN+YDG++
Sbjct: 132 SSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVA 191

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L  +    + ATHHEM  LY +
Sbjct: 192 EKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAK 250

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ LYDRYF+H +  R 
Sbjct: 251 ALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRF 310

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LT
Sbjct: 311 ELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLT 370

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDT
Sbjct: 371 TVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDT 430

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV 
Sbjct: 431 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVF 490

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ + A  LWRKML+MLF
Sbjct: 491 DDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLF 550

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  + 
Sbjct: 551 ETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDG 610

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           + D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+MGFQ AL+L HI Y
Sbjct: 611 KLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAY 670

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A++ AD+SME IS+ AI AS +LA ERGAYSSF+GSLW +G+ P+DS  +L E R 
Sbjct: 671 GSDAAIDFADKSMEAISYFAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARG 730

Query: 735 E--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           +  + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVK
Sbjct: 731 QKYIDVDLSESLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVK 789

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           SN+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE++
Sbjct: 790 SNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVE 849

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS E
Sbjct: 850 TKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTE 909

Query: 913 KSTLKGVDGKLNAVPVT-----------DPNSSTHSLGIPSSCTSD-TECEVCQ 954
           KST+    GKLNAV                 +      +P +C+ D  +CE CQ
Sbjct: 910 KSTIN--TGKLNAVSSGGSEAANSASAAPAAAEPKPAPVPLACSIDNPDCEACQ 961


>gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae 642]
          Length = 970

 Score = 1053 bits (2723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMAELYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf-5]
 gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha chain [Pseudomonas
           fluorescens Pf-5]
          Length = 963

 Score = 1053 bits (2722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/955 (57%), Positives = 701/955 (73%), Gaps = 17/955 (1%)

Query: 10  GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
              D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ 
Sbjct: 16  QAADSTQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIH 72

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ R+  R
Sbjct: 73  DTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKER 132

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           A +S S+      P ++I   DG+    +  RL  IV EAC GL++V   ++  ET KN+
Sbjct: 133 ATRSTSEEPVQAHPSIRITRTDGSFAPLDMGRLNTIVSEACEGLEEVDGDLIQRETLKNL 192

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  + +  + ATHHEM 
Sbjct: 193 YDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-EVAESATHHEMA 251

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            LY +    Y+ +G++  LL+  + +FDL  L   + +ERD  F YLGLQ LYDRYF+H 
Sbjct: 252 ELYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHK 311

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT  PQLS
Sbjct: 312 DGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLS 371

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLK
Sbjct: 372 SCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLK 431

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLF
Sbjct: 432 VVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLF 491

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IK+F+ + A  LWRKM
Sbjct: 492 MKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKTVQAKDLWRKM 551

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  
Sbjct: 552 LSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPN 611

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           H  + + D  KL  T+ TAVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ AL+L
Sbjct: 612 HIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYL 671

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            HI Y S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L
Sbjct: 672 QHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQIL 731

Query: 730 AEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            E R +  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI+P+YQ
Sbjct: 732 IEARGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQ 790

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK+++AT
Sbjct: 791 NLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYAT 850

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +
Sbjct: 851 AFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALA 910

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL--------GIPSSCTSDTECEVCQ 954
           ATS EKST+    GKLNAV     +     L           +    + +CE CQ
Sbjct: 911 ATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 970

 Score = 1052 bits (2721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 696/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC  L +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACESLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P               +    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
 gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
          Length = 969

 Score = 1052 bits (2719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/954 (57%), Positives = 706/954 (74%), Gaps = 11/954 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           + ++ +    +   ++   P +   ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+
Sbjct: 24  AANLTQAPGASAAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAA 80

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTE       +   S   +HIED+QDQVE SLM++G HKI R+YV+YRE
Sbjct: 81  ASSRIHETVAKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYRE 140

Query: 124 ERSDVRAAQSHSKSDA-PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           +++  RAA+    ++    A ++ ++  DG+    + +RL +IV EAC+GL DVS   +L
Sbjct: 141 QQASKRAARQSLSAETQEAADRINVVQLDGSKAPLDLERLHIIVSEACAGLDDVSETRIL 200

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+YDG+S  +L T+L+ ++RTLIE+EPNY   +AR L + LR E L+ +      
Sbjct: 201 DEALRNLYDGVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEALSFL-GVADS 259

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M  LY +    YI  GV+  LL  ++ ++DL  +   +  ERD  F YLGLQ LY
Sbjct: 260 ATQGDMDRLYAKALPAYIARGVELELLDPTLAEYDLERMGKAILPERDLQFTYLGLQTLY 319

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H +  R E+PQ FFMRVAMGLA++ET++E RA+EFY LLSSF +M STPTLFN+G
Sbjct: 320 DRYFIHSDEVRFELPQIFFMRVAMGLAVEETDREARAIEFYRLLSSFDYMSSTPTLFNAG 379

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 380 TLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQ 439

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTA
Sbjct: 440 GVVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTA 499

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV  +  WTLFSP++V DLHDLYGK FE  Y  YE  A  GE+K  + + A
Sbjct: 500 NWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKA 559

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNL
Sbjct: 560 QNLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNL 619

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H   N  + +KLA T+RTAVR+LDNVIDIN ++++ A+ SN  HR +GLGLMG
Sbjct: 620 GSINLPQHVDENGLNLEKLAETVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMG 679

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+  HI Y S +AV  AD SME IS++AI AS +LA+ERGAY S++GSLW QG+ P
Sbjct: 680 FQDALYKQHIAYGSEDAVTFADRSMEAISYYAIDASSKLAEERGAYESYEGSLWSQGILP 739

Query: 723 IDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           IDS+G L E R  D + ++ +  + W  L++ VK  GMRNSN MAIAPTATIANI GVSQ
Sbjct: 740 IDSLGKLVEERGSDYIKVDDSMTMDWTSLREAVKARGMRNSNVMAIAPTATIANITGVSQ 799

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LVN+LK R LWD  M++DLKY+DGS+  IERIP D
Sbjct: 800 SIEPTYQNLYVKSNLSGEFTVVNPYLVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPAD 859

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           L+ I++ AFE++P W++E ASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTT
Sbjct: 860 LRAIYSNAFEVEPRWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTT 919

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRS +AT  EKST+    G+LNAV  +  ++   +    +    D +CE CQ
Sbjct: 920 YYLRSLAATGTEKSTID--TGQLNAV--SSESAPAPAPVPMACSLDDPDCEACQ 969


>gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
 gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
          Length = 922

 Score = 1051 bits (2717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/926 (60%), Positives = 699/926 (75%), Gaps = 8/926 (0%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKRNG V  FD SKIS AI KAF+AVEG  A+ S R+ + +  LT Q +    +   S  
Sbjct: 2   IKRNGQVVPFDNSKISVAITKAFLAVEGGTAAASSRIHETVAKLTTQVMGTFERRMPSGG 61

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMMD 150
            +HIEDIQDQVE +LM++G HKI R+YV+YREE++  RA +    ++A   A  + ++  
Sbjct: 62  TIHIEDIQDQVELALMRAGEHKIARDYVIYREEQARKRAQKRALSAEAERAAGAISVLQP 121

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG+    + +RL+ +V EAC+ L DVS+  +L E  +N+YDG++  ++ T+L+ ++RTLI
Sbjct: 122 DGSRAPLDIERLQTVVSEACADLADVSASKILEEALRNLYDGVTLDEVTTSLVITARTLI 181

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E+EPNY    AR L + LR E L  +    Q+AT  EM   YP+    YI +G++  LL 
Sbjct: 182 EQEPNYTYAAARLLCDDLRSEALEFL-GVTQRATQQEMALYYPQALQAYIAKGIQLELLS 240

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             + DFD+  L   ++ ERD  F YLGLQ LYDRYF+H N +R E+PQ FFMR+AMGLA+
Sbjct: 241 PELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLAV 300

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +E +K  RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+GA+++N
Sbjct: 301 REDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRDN 360

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCA
Sbjct: 361 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 420

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ANWIPDLFMKRV +   WTLFSP++  DL
Sbjct: 421 YLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPDL 480

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HD YG +FE  YE YE Q   GE+K+F+++ A  LWRKML MLFETGHPWITFKDPCN+R
Sbjct: 481 HDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNLR 540

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ HVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H   N  + +KL  T+ TAVR
Sbjct: 541 SPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAVR 600

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVIDIN +++ +A++SN  HR +GLGLMGFQ AL+  HI Y+SPEAVE AD SME I
Sbjct: 601 MLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEAI 660

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDE 748
           S++AI AS  LA+ERG YSSF+GSLW QG+ PIDS+  LAE R +  L ++RT  L WD 
Sbjct: 661 SYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWDT 720

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LVN
Sbjct: 721 LRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 780

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LK R+LWD+ M++DLKY+DGS   I+RIP DLK I++TAFE++P W++E+ASRRQKWID
Sbjct: 781 DLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWID 840

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QAQSLNLY++  SGKKLD  YR AWL GLKTTYYLRS +AT  EKST+    G LNAV  
Sbjct: 841 QAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVD--KGTLNAVAA 898

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
               +   +    +    D +CE CQ
Sbjct: 899 AA--APQPAPVPKACSLDDPDCEACQ 922


>gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri DSM 4166]
          Length = 960

 Score = 1051 bits (2717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/953 (58%), Positives = 708/953 (74%), Gaps = 20/953 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +  
Sbjct: 15  APDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVAR 71

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE ++  R + S 
Sbjct: 72  LTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREAQAVKRKSASG 131

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           S   A   P +++   DG+    +  RL+ I+ EAC GL +V   ++  ET KN+YDG++
Sbjct: 132 SSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGALIERETLKNLYDGVA 191

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L  +    + ATHHEM  LY +
Sbjct: 192 EKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALGFL-GVAESATHHEMADLYAK 250

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ LYDRYF+H +  R 
Sbjct: 251 ALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQTLYDRYFIHKDNVRF 310

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+LT
Sbjct: 311 ELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLT 370

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDT
Sbjct: 371 TVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDT 430

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV 
Sbjct: 431 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVF 490

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ + A  LWRKML+MLF
Sbjct: 491 DDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTLPAKDLWRKMLSMLF 550

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H  + 
Sbjct: 551 ETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIKDG 610

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           + D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+MGFQ AL+L HI Y
Sbjct: 611 KLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGIMGFQDALYLQHIAY 670

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A++ AD+SME IS++AI AS +LA ERGAYSSF+GSLW +G+ P+DS  +L E R 
Sbjct: 671 GSDAAIDFADKSMEAISYYAIQASCDLADERGAYSSFEGSLWSKGILPLDSQQILIEARG 730

Query: 735 E--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           +  + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GVSQSI+P+YQNLYVK
Sbjct: 731 QKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVK 789

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           SN+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE++
Sbjct: 790 SNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVE 849

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS E
Sbjct: 850 TKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTE 909

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS----------SCTSD-TECEVCQ 954
           KST+    GKLNAV      ++  +   P+          +C+ D  +CE CQ
Sbjct: 910 KSTIN--TGKLNAVSSGGSEAANSASAAPAAEPKPAPVPLACSIDNPDCEACQ 960


>gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 972

 Score = 1050 bits (2715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/966 (59%), Positives = 707/966 (73%), Gaps = 37/966 (3%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             +    ++VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++  LT+Q  T
Sbjct: 11  AADTPTAIRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAELTQQVET 70

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            LL+H      +HIE IQD VE +LM+  HHK+ R YVLYR+ER+  R A   + ++A  
Sbjct: 71  TLLRHAGPETALHIEQIQDIVELALMRGEHHKVARAYVLYRDERAKAREAVKPATTEA-- 128

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   DG L   +  R+  +V EA +GL+DV+++ VL+E  +N+YDG+S  +L  A
Sbjct: 129 --TLNVKGTDGVLRPLDWARVSHVVGEAVAGLEDVTAEPVLAEAKRNLYDGISADELALA 186

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I ++R L+E+EPNY+ V+AR LL+KLR E L+ +   P+ A+  EM   YP YF  Y+ 
Sbjct: 187 QIMAARVLVEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEYPAYFRAYLR 246

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
             ++  L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H +G+R E+PQAFF
Sbjct: 247 RAIELELVDAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGTRFELPQAFF 306

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMGLA++E ++E RA+EFY LLSSFHFM STPTLFNSGT  PQLSSCFLTTV DDL 
Sbjct: 307 MRVAMGLAIREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCFLTTVDDDLD 366

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTAVAVNQG
Sbjct: 367 SIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTAVAVNQG 426

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV  +A WTL
Sbjct: 427 GKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTL 486

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP+E  DLHDLYG EF   Y  YE  ADRGEIKVFR+  AV LWR+MLTMLFETGHPWI
Sbjct: 487 FSPNETPDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTMLFETGHPWI 546

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++SEE AVCNLGS+NLL H      D  +L
Sbjct: 547 TFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVTPEGLDTKRL 606

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             T+RTAVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  + +P+AS EAV+
Sbjct: 607 EKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVK 666

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMN 739
            AD SME +S++AISAS +LA+ERG Y SF+GSLW +G+ PIDS+ LL + R  D L ++
Sbjct: 667 FADVSMEHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVD 726

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S L W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNL+VKSNMSGDF
Sbjct: 727 TSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKSNMSGDF 786

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN  LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+  W++++
Sbjct: 787 TVVNPHLVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDA 846

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            S RQKWIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT VEKSTL+G 
Sbjct: 847 GSVRQKWIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATHVEKSTLRGT 906

Query: 920 DGKLNAVPV-------------------------------TDPNSSTHSLGIPSSCTSDT 948
           DGKLNAV                                  +P+    +    +    D 
Sbjct: 907 DGKLNAVSATPAPAAPAAAAPAPAPTPTPAPAPAPSPSPKPEPDVDFVATEGAACRIDDP 966

Query: 949 ECEVCQ 954
           +CE CQ
Sbjct: 967 DCEACQ 972


>gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 971

 Score = 1050 bits (2714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/969 (56%), Positives = 697/969 (71%), Gaps = 24/969 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEE-GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           HHEM  LY +    Y+   G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 246 HHEMADLYAKALPAYVTPAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 305

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 485

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A
Sbjct: 486 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 546 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 605

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 606 GSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 665

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 666 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 725

Query: 723 IDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R E  ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 726 LDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 784

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 785 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 844

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 845 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 904

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------------SSCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P               +   
Sbjct: 905 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 962

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 963 DEPDCEACQ 971


>gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio
           japonicus Ueda107]
 gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus
           Ueda107]
          Length = 978

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/976 (57%), Positives = 719/976 (73%), Gaps = 31/976 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +   +  D      L+   P +   ++VIKRNG V  FD SKI+ A+ KAF+AVEG  A+
Sbjct: 9   TSTSSHADLSNNNGLSATAPGQ---LRVIKRNGTVVPFDASKIAIAMTKAFLAVEGGTAA 65

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S RV++ + NLT+Q      +   S   +HIE+IQDQVE  LM++G  K+ R+YVLYRE
Sbjct: 66  ASTRVRETVDNLTKQITATFKRRMPSGGTIHIEEIQDQVELILMRAGEQKVARDYVLYRE 125

Query: 124 ERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E + +R AQ         P  P + +   DGT    +  R+  IV EAC+GL  V  K +
Sbjct: 126 EHARLRRAQKEVNKTEADPDYPAMSVTQADGTRAPLDIARMRTIVSEACAGLAGVEEKAI 185

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L E  +N+YDG++E D+ T+L+ ++RTL+EKEPNY   TAR LL+KLR E L  +   P 
Sbjct: 186 LDEAMRNLYDGVAEKDVNTSLVITARTLVEKEPNYTYATARLLLDKLRAEALGFLGVAPS 245

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  +M+  Y      YI++GV+  L+   +++FDL  L   L  +RD  F YLGLQ L
Sbjct: 246 -ATQSDMELYYARALPVYIQKGVELELISPELLNFDLDKLGKALIADRDLQFTYLGLQTL 304

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H + +RIE+PQ FFMRVAMGLAL+E ++E+RA+EFY LLSSF +M STPTLFNS
Sbjct: 305 YDRYFIHSDSTRIELPQIFFMRVAMGLALQEDKREERAIEFYRLLSSFDYMSSTPTLFNS 364

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKS
Sbjct: 365 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRGLGAYIKGTNGKS 424

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNT
Sbjct: 425 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDVEEFLELRKNTGDDRRRTHDMNT 484

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFMKRV ++  WTLFSP++V DLHDLYGK FE  YE+YE+ A +G++++F+ + 
Sbjct: 485 ANWVPDLFMKRVFEDQEWTLFSPNDVPDLHDLYGKAFEERYEHYEQLAAQGKVRLFKTVR 544

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVC 600
           A+ LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+ + +E AVC
Sbjct: 545 ALDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTKAGDEIAVC 604

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL  H  N + D  KL  T+ TA+R+LDNVIDIN + ++ +K+SN  HR IGLG+
Sbjct: 605 NLGSVNLAQHIVNGKLDLAKLEKTVSTAIRMLDNVIDINYYAVDTSKQSNLRHRPIGLGI 664

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   I Y+S  AV+ AD SME +S++AI AS +LAQERG YS+F+GSLW +GV
Sbjct: 665 MGFQDALYEQRIAYSSQAAVDFADTSMEAVSYYAIKASCQLAQERGKYSTFEGSLWSKGV 724

Query: 721 FPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDSI +LA+ R E  + ++R+    WD L+  VKT GMRNSN MAIAPTATI+NI GV
Sbjct: 725 LPIDSIDILAQNRGENYIKVDRSKTFDWDSLRTEVKTKGMRNSNVMAIAPTATISNITGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD  M++DLKY++GS+  I+RIP
Sbjct: 785 TQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVQKIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +D+K I+ATAFE++P W++ESASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GLK
Sbjct: 845 EDMKAIYATAFEVEPKWIVESASRRQKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-------------------DPNSSTHSLG 939
           TTYYLR+ +AT+ EKST+    G LNAV  T                   +  S   +  
Sbjct: 905 TTYYLRALAATTTEKSTIN--TGALNAVSATGNSGLSAAPAAAKPVVADIEEASFAEAAP 962

Query: 940 IPSSCTSD-TECEVCQ 954
           +P +C+ D  +CE CQ
Sbjct: 963 VPKACSIDNPDCEACQ 978


>gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella
           koreensis DSM 16069]
 gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella
           koreensis DSM 16069]
          Length = 957

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/948 (59%), Positives = 720/948 (75%), Gaps = 12/948 (1%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  + P +    P +I   +VI+RNG VT +D SKI  A+ KAF+AVEG  A+ S RV +
Sbjct: 18  NTPSRPEIEATKPGEI---RVIRRNGKVTPYDDSKIEVAMTKAFLAVEGGAAAASSRVHE 74

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++ LT+Q      +      I+HIED+QDQVE +LM++G  K+ R YVLYREERS  RA
Sbjct: 75  TVRQLTKQITDAFKRRMPGGGIIHIEDVQDQVELALMRNGEQKVARSYVLYREERSRERA 134

Query: 131 AQSHSKSDAPIAP-KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           A+  +K DA +   ++ + ++DG+    + +RL  +V EAC  L DV    +L +T +N+
Sbjct: 135 ARDTAKLDALVGDNQVMVTVEDGSKRPLDVERLHTVVVEACKDLSDVEPDQILKDTMRNL 194

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG++  D   AL+ ++RT+IEKEPNY  VTAR LL+ +R E L  +    ++AT  EM 
Sbjct: 195 YDGVAIKDAYQALVMTARTMIEKEPNYTYVTARLLLDSIRSEALREL-GVAKRATQSEMN 253

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            +YPE F  Y+  GV+  LL   ++ FDL  +AN +K ERD  F YLG+Q L+DRYF+H 
Sbjct: 254 AIYPEAFKAYLSVGVENELLSPELLSFDLDKIANAIKPERDMLFTYLGIQTLFDRYFIHK 313

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +  RIE+PQ F+MRVAMGLA+ E ++E RA+EFY++LS+FH+M STPTLFNSGT  PQLS
Sbjct: 314 DEVRIELPQVFWMRVAMGLAVNEDDREARAIEFYDVLSTFHYMSSTPTLFNSGTLRPQLS 373

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+LT VPDDL GI+GA+++NA+L+K++GGLGNDWTPVRGLGA+I GTNGKSQGV+PFLK
Sbjct: 374 SCYLTNVPDDLDGIYGAIKDNALLSKFAGGLGNDWTPVRGLGAYIKGTNGKSQGVVPFLK 433

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           VANDTAVAVNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMN+ANW+PDLF
Sbjct: 434 VANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNSANWVPDLF 493

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +KRV+ +  WTLFSP+EV DLHDLYGKEFE  YE YE  A  G+IK  + I A  LWRKM
Sbjct: 494 LKRVSSDGDWTLFSPNEVPDLHDLYGKEFEERYEYYEEMAKYGKIKTAKTIPANVLWRKM 553

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-SSEETAVCNLGSINLL 608
           L+MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+ + EE AVCNLGS+NL 
Sbjct: 554 LSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTKAGEEIAVCNLGSVNLP 613

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            H  + + D ++L  T+ TAVR+LDNVIDIN + ++ A+KSN  HR +GLGLMGFQ AL+
Sbjct: 614 KHMKDGKLDTEQLEKTVSTAVRMLDNVIDINFYPVDTARKSNMRHRPVGLGLMGFQDALY 673

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L +IPY S  AV+ AD +ME IS++AI AS +LA+ERG+Y SF GSLW QG+ PIDSI  
Sbjct: 674 LQNIPYTSEAAVDFADNAMEAISYYAIQASTDLAEERGSYESFAGSLWSQGILPIDSIEK 733

Query: 729 LAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           L E R    + ++ +S + WD L++RVKTIGMRNSN MAIAPTATI+NI GVSQSI+P+Y
Sbjct: 734 LIEERGAEFIEVDTSSTMDWDTLRERVKTIGMRNSNVMAIAPTATISNISGVSQSIEPTY 793

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTVVN ++V ELK R LWD  M++DLKY++GS+ +I+RIP ++K++ A
Sbjct: 794 QNLYVKSNLSGEFTVVNPYMVKELKARKLWDSVMVNDLKYYEGSLQHIDRIPSEIKELFA 853

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ EPSGKKLD +YR AW  GLKTTYYLRS 
Sbjct: 854 TAFEVEPKWLVEAASRRQKWIDQAQSLNLYMSEPSGKKLDMVYRMAWFRGLKTTYYLRSL 913

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            ATS EKST+   DGKLNAV      ++  S    +    + +CE CQ
Sbjct: 914 GATSTEKSTI--SDGKLNAVSSGP--AAVGSAAPKACAIDEPDCEACQ 957


>gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
 gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
          Length = 968

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/969 (57%), Positives = 709/969 (73%), Gaps = 25/969 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P     +  E +   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  
Sbjct: 9   NPQAVTPQAAE-SSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGT 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+Y
Sbjct: 65  AAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIY 124

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           RE ++  R A + S+   P  P ++I    G +   +  RL+ I+ EAC GL +V   ++
Sbjct: 125 REAQASKRKASAGSEIAQP-HPSIRITNAAGEVQPLDMGRLQTIIREACEGLAEVDGSLI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E L+ +     
Sbjct: 184 ERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALSFL-SIAA 242

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            ATHHEM  LY +    Y+E+GV+  LL   +  FDL  L   + +ERD  F YLGLQ L
Sbjct: 243 SATHHEMADLYAKALPAYVEKGVEFELLDAKLKTFDLEKLGAAINHERDQQFTYLGLQTL 302

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFN 360
           YDRYF+H +G R E+PQ FFMRVAMGLA++E + +E RA+EFYNLLSSF +M STPTLFN
Sbjct: 303 YDRYFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFN 362

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 363 AGTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGK 422

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 423 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 482

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV ++  WTLFSP EV DLHDL GK FE  YE YE   + G+IK+++ I
Sbjct: 483 TANWIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTI 542

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 543 QAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 602

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL+ H  + + D +KL  T++TAVR+LDNVIDIN +++++A+ SN  HR +GLGL
Sbjct: 603 NLGSVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVDQARNSNLKHRPVGLGL 662

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HI Y S  A+E AD+SME IS++AI AS +LA ERG+YS+F+GSLW +G+
Sbjct: 663 MGFQDALYLQHIAYGSDAAIEFADKSMEAISYYAIQASCDLADERGSYSTFEGSLWSKGI 722

Query: 721 FPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  LL E R +  + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GV
Sbjct: 723 LPLDSQQLLIEARGQKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIIGV 781

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP
Sbjct: 782 SQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIP 841

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 842 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 901

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------STHSLGIPSSCT 945
           TTYYLR+ +ATS EKST+    GKLNAV                       +    +   
Sbjct: 902 TTYYLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAI 959

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 960 DEPDCEACQ 968


>gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus
           degradans 2-40]
 gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Saccharophagus degradans 2-40]
          Length = 969

 Score = 1047 bits (2708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/972 (57%), Positives = 717/972 (73%), Gaps = 21/972 (2%)

Query: 1   MHPSKDVNKGDEDAFP------SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAF 54
           M  ++  N G     P      S +         ++VIKRNG V  +   KIS A+ KAF
Sbjct: 1   MQTTETENTGKPQGSPIADNASSSSTINATAPGQLRVIKRNGTVVPYTDDKISVAMTKAF 60

Query: 55  MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKI 114
           +AVEG  A+ S R+ + ++ LT Q      +   S   +HIE+IQDQVE +LM++G HK+
Sbjct: 61  LAVEGGTAAASRRIHETVEGLTAQISATFKRRMPSGGTIHIEEIQDQVELTLMRAGEHKV 120

Query: 115 TREYVLYREERSDVRAAQSHSKS-DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL 173
            R+YV+YR +R++ R    + +  +    P++ ++  +G     +  R++ +V EAC+GL
Sbjct: 121 ARDYVIYRAKRAEQRTPAVNVEDVNFSDFPEINVVDHNGDRHPLDIDRIKTVVAEACAGL 180

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           +DV +  +L E  +++YDG+S +DL TAL+ S+RTL+EKEPNY   T+R L++KLR E L
Sbjct: 181 KDVDADAILKEAMRSLYDGVSLTDLNTALVISARTLVEKEPNYTYATSRLLMDKLRAEAL 240

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
           + +    ++AT  EM+ LY +    YIE+G++  L+   +  +DL  L N L  ERD  F
Sbjct: 241 SFL-GIAEEATQAEMETLYAKTLPAYIEKGIELDLISPDLASYDLNMLGNALIAERDLQF 299

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            YLGLQ LYDRYFLH N  RIE+PQ FFMRVAMGLA  E  K +RAVEFY LLSSF +M 
Sbjct: 300 TYLGLQTLYDRYFLHSNDVRIELPQIFFMRVAMGLAANEENKNERAVEFYRLLSSFDYMS 359

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           STPTLFN+GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+
Sbjct: 360 STPTLFNAGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRGLGAY 419

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDR
Sbjct: 420 IKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDR 479

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           RRTHDMNTANW+PDLFMKRV +   WTLFSP++V DLHDL+G+ FE  YE YERQA  G+
Sbjct: 480 RRTHDMNTANWVPDLFMKRVFEEKEWTLFSPNDVPDLHDLFGRAFEDRYEEYERQAAAGK 539

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS- 592
           I+V +K+ A+ LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ 
Sbjct: 540 IRVHKKVRALDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTK 599

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           ++EE AVCNLGSINL  H  + + D +KLA T++TAVR+LDNVIDIN + +E A+ SN  
Sbjct: 600 ANEEIAVCNLGSINLAQHIVDGKLDEEKLAQTVKTAVRMLDNVIDINYYAVESARTSNMR 659

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR +GLGLMGFQ AL+ ++I Y+S +AV  AD SME IS+HAI AS ELA+ERG+YS+F 
Sbjct: 660 HRPVGLGLMGFQDALYKMNISYSSDDAVTFADRSMEAISYHAIKASSELAKERGSYSTFD 719

Query: 713 GSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           GSLW +G+ P+DS+ LL E R E  + ++++S   WD L++ VKT GMRNSN MAIAPTA
Sbjct: 720 GSLWSKGILPLDSLDLLIENRGEKFIKVDKSSTHDWDTLRETVKTQGMRNSNVMAIAPTA 779

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LV++LK+R LWD  M++DLKY++GS
Sbjct: 780 TIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKERGLWDSVMVNDLKYYEGS 839

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  I+RIP+DLK +++TAFE++P W++E+ASRRQKWIDQAQSLNLY+   +GKKLD  YR
Sbjct: 840 LQKIDRIPEDLKALYSTAFEVEPRWIVEAASRRQKWIDQAQSLNLYIAGANGKKLDITYR 899

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV--------PVTDPNSSTHSLGIPS 942
            AW  GLKTTYYLR+ SAT+ EKST+    G LNAV                  +    +
Sbjct: 900 MAWYSGLKTTYYLRALSATTTEKSTV--TSGTLNAVSSGGGASQSAAAAAEPAPAAVPLA 957

Query: 943 SCTSDTECEVCQ 954
               D +CE CQ
Sbjct: 958 CSLDDPDCEACQ 969


>gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 957

 Score = 1047 bits (2707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/930 (60%), Positives = 716/930 (76%), Gaps = 4/930 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVI+RN  ++ FDPSKI+ A+ KAF+AVEG  A+ S RV+DI++      V  L +H  
Sbjct: 28  FQVIRRNRTLSPFDPSKIAVAMTKAFVAVEGSSAATSARVRDIVERRCVSVVEALTRHAD 87

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI-APKLKI 147
           +   +HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ +R      ++   +    ++ 
Sbjct: 88  AQRALHIEEIQDQVELALMRGGHHKVARAYVLYREERARLRRESGAEETTPGVATSTVRF 147

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
               G L + +   L +++++AC GL  VS+  VL ET +N+YDG++  +L  A I ++R
Sbjct: 148 RTATGELRTIDQGHLGLVIDDACDGLDGVSAVSVLDETLRNIYDGITADELSLAPILAAR 207

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+E EPNYA V+AR LLE+LR EVL+ ++ +  +A   +M   Y +YF  ++  G+   
Sbjct: 208 TLVETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTG 267

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +  FDL  LA+ L+ ERD AF YLGLQ LYDRY LH +G R+E+PQ FFMRVAMG
Sbjct: 268 LLDPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMG 327

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT   QLSSCFLTTVPDDL GIF ++
Sbjct: 328 LALREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSV 387

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+LAKYSGGLGNDW+ VRGLG++I GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 388 KDNALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGA 447

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV ++  WTLFSPDEV
Sbjct: 448 VCAYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEV 507

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDLYG+ F   Y  +E +A+RGE+ V +++ AV LWR+MLTMLFETGHPWITFKDPC
Sbjct: 508 PDLHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPC 567

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQH GV+HSSNLCTEITLN+S  E AVCNLGS+NL  H +    D  +LA+T+RT
Sbjct: 568 NLRSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRT 627

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ ALH+L +PYAS  A+  ADESM
Sbjct: 628 AVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESM 687

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPW 746
           EF+S+ AI+AS +LA ERG+Y SF GSLW +G+ PIDS+ LL   R+  L  +R+SRL W
Sbjct: 688 EFLSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGRLECDRSSRLDW 747

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L++RV+T G+RNSN +AIAPTATI+NICGVSQSI+PSY+NL+VKSNMSG+FT VN +L
Sbjct: 748 SSLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYL 807

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK R LWDE M+ DLKY DGS+G I+R+P+DLK+++ TAFE+D  WLIE+A+RRQKW
Sbjct: 808 VQDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKW 867

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+  P+G++LD +YR AW  GLKTTYYLRS++AT VEKSTL   DGKLNAV
Sbjct: 868 IDQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAV 927

Query: 927 PVTDPN--SSTHSLGIPSSCTSDTECEVCQ 954
            V      S+  ++  P+    + +CE CQ
Sbjct: 928 AVAAAQTVSAIEAVTAPACSIDNPDCEACQ 957


>gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
           borkumensis SK2]
 gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2]
          Length = 962

 Score = 1047 bits (2707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/959 (58%), Positives = 715/959 (74%), Gaps = 18/959 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+    S+A   P +   ++VIKRNG V  +D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQ----SIASTAPGQ---LRVIKRNGKVVGYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           E+R+  RAA+  S        +  + + M+DG+    +  RLE ++  ACSGL+DV++  
Sbjct: 128 EQRASKRAAEQKSTDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADK 187

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L    +  
Sbjct: 188 IITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLRVA 246

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++A+H EM  LY +    YI +G++  LL   + ++DL  L   L   RD  F YLGLQ 
Sbjct: 247 ERASHDEMNALYSDALKAYISKGIELELLSPQLAEYDLDALGAALDGNRDLQFSYLGLQT 306

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H N +RIE+PQ FFMRVAMGLA +E  +E RA+EFYNLLSSF +M STPTLFN
Sbjct: 307 LYDRYFIHHNDTRIELPQCFFMRVAMGLAAEEDNREARAIEFYNLLSSFDYMSSTPTLFN 366

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+
Sbjct: 367 AGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGR 426

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 427 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 486

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           +ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+++
Sbjct: 487 SANWIPDLFMKRVINEEDWTLFSPNDTPDLHDLYGEAFEKAYTEYEAKTRSGELKLFKRL 546

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVC
Sbjct: 547 PAINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVC 606

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL  H   N  + +KL STI TAVR+LDNVIDIN +++ +AK+SN  HR +GLG+
Sbjct: 607 NLGSVNLAQHVDENGLNIEKLQSTINTAVRMLDNVIDINYYSVPQAKRSNMKHRPVGLGI 666

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW QG+
Sbjct: 667 MGFQDALYKQGISYASSDAVTFADTSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGI 726

Query: 721 FPIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDSI +L + R E    ++R+  L WD ++   K  GMRNSN MAIAPTATIANI GV
Sbjct: 727 LPIDSIDILVKQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTVVN +LV  LK+R LWD  M++DLKY+DGS   IERIP
Sbjct: 786 SQSIEPTYQNLYVKSNLSGEFTVVNPYLVKALKERGLWDNVMVNDLKYYDGSAQPIERIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+GLK
Sbjct: 846 ADLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD--PNSSTHSLGIPSSCTSD-TECEVCQ 954
           TTYYLR+  AT  EKST+   DGKLN V      P     +  +P +C+ D  +CE CQ
Sbjct: 906 TTYYLRAIGATQTEKSTI--SDGKLNQVSSGPETPAEFNQAADVPKACSIDEPDCEACQ 962


>gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
 gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
          Length = 962

 Score = 1047 bits (2706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/959 (59%), Positives = 716/959 (74%), Gaps = 18/959 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+    SLA   P +   ++VIKRNG V S+D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQ----SLASTAPGQ---LRVIKRNGKVVSYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E+++  RAA+  S   AP     + + M+DG+    +  RLE ++  ACSGL+DV++  +
Sbjct: 128 EQQASKRAAEHSSDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADKI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L       +
Sbjct: 188 ITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLNVAE 246

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +A+H EM  LY E    YI +G++  LL   + ++DL  L   L   RD  F YLGLQ L
Sbjct: 247 RASHDEMNALYGEALKAYIGKGIELELLSPQLAEYDLDKLGAALDGNRDLQFSYLGLQTL 306

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H N +RIE+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+
Sbjct: 307 YDRYFIHHNDTRIELPQCFFMRVAMGLAVEEDNREARAIEFYNLLSSFDYMSSTPTLFNA 366

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+S
Sbjct: 367 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGRS 426

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+
Sbjct: 427 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNS 486

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+++ 
Sbjct: 487 ANWIPDLFMKRVINEEDWTLFSPNDAPDLHDLYGEAFEKAYLEYEAKTRSGELKLFKRLP 546

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVCN
Sbjct: 547 AINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVCN 606

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL  H   N  D +KL  TI TAVR+LDNVIDIN +++ +A++SN  HR +GLG+M
Sbjct: 607 LGSVNLAQHVDENGLDIEKLQGTINTAVRMLDNVIDINYYSVPQAERSNMKHRPVGLGIM 666

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW QGV 
Sbjct: 667 GFQDALYKQGISYASSDAVTFADNSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGVL 726

Query: 722 PIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI +L   R E    ++R+  L WD ++   K  GMRNSN MAIAPTATIANI GVS
Sbjct: 727 PIDSIEILVNQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV+ LK+R LWD  M++DLKY+DGS   IERIP 
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVSALKERGLWDNVMVNDLKYYDGSAQPIERIPA 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+GLKT
Sbjct: 846 DLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCT-SDTECEVCQ 954
           TYYLR+  AT  EKST+   DGKLN V       +     +  +P +C+  D +CE CQ
Sbjct: 906 TYYLRAIGATQTEKSTIN--DGKLNRVSSKVEEPAAEFGQAADVPQACSLDDPDCEACQ 962


>gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxidans DMS010]
 gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxydans DMS010]
          Length = 976

 Score = 1046 bits (2704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/972 (56%), Positives = 701/972 (72%), Gaps = 32/972 (3%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
                +       G  VI+RNG VT FD  KI+ AI KAF+AVEG  A  S R+ D +K 
Sbjct: 5   PAQTTHTPSSAESGYSVIRRNGKVTDFDSGKIAVAITKAFLAVEGDSAQNSRRIHDTVKK 64

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT Q    LL+       VHIEDIQDQVE +LM+ G +K+ R YV+YRE++S+ RA +  
Sbjct: 65  LTGQITDNLLRRLDDGGTVHIEDIQDQVELALMREGEYKVARSYVVYREKQSEKRAEEEK 124

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
                     L + + DGT    +  RL  ++ EAC GL +V  + +L +T +N++DG+ 
Sbjct: 125 KHPQPANETTLHVTLADGTRQPLDIDRLHNLITEACEGLAEVDREAILRDTQRNLFDGVK 184

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           ESD+E AL+  +RT IEK+P Y+ + AR L++ +RRE L+ V+K P++A  +EM  +YP+
Sbjct: 185 ESDVEKALVMGARTFIEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDIYPD 244

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  YI   ++  L+   +  FDL  L   LK E DF F YLGLQ LYDRYF+H +G+R 
Sbjct: 245 YFKSYIHTAIEKELVDSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDGTRF 304

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAF+MRVAMGLA+ E  +E+RA+EFYNLLSSF FM STPTLFNSGT  PQLSSC+LT
Sbjct: 305 ELPQAFYMRVAMGLAINELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLT 364

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNGKSQGV+PFLKVANDT
Sbjct: 365 TVPDDLSGIYNAMRDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVANDT 424

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVCAYLETWHID+EEFLD+RKNTGDDRRRTHDMNTANWIPD+FMKRV 
Sbjct: 425 AVAVNQGGKRKGAVCAYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMKRVA 484

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +   WTLFSP+EV DLHDL G  FE AY  YE +A RGEI+ F+++ A  LWRKML MLF
Sbjct: 485 EEGQWTLFSPEEVDDLHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLGMLF 544

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-AN 613
           ETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+N++ H   N
Sbjct: 545 ETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHIDEN 604

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            + D  KL  T+RTA+R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ AL+ L +P
Sbjct: 605 GKLDTQKLQKTVRTAMRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKLRLP 664

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+S E V+ ADESME +S++AI AS +LA ERG Y S++GSLW +G+ PIDSI LL E R
Sbjct: 665 YSSEETVKFADESMEAVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQEAR 724

Query: 734 DE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            E L  + +  + WD L+ ++K  GMRNSN MAIAPTATI+NICGVSQSI+P+YQN++VK
Sbjct: 725 GEYLQQDDSQTMDWDALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNIFVK 784

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           SN+SG+FTV+N ++V +LK RDLWDE MI+DLKY DGS+ +I+RIPD+LK ++ TAFE+D
Sbjct: 785 SNLSGEFTVINPYMVEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAFEMD 844

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             WLIE+ASRRQKWIDQAQSLNLY+ EPSGKK+D +Y+ AW+ GLKTTYYLRS  AT  E
Sbjct: 845 ARWLIEAASRRQKWIDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGATGAE 904

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSL-----------------------------GIPSS 943
           K++           P      ++                                  P +
Sbjct: 905 KTSSAPTPPPSAQKPTGPTPVASAPTASPVASSAAASAPLASAAADPEEFLGEGMEAPQA 964

Query: 944 CTS-DTECEVCQ 954
           C+  + +CE CQ
Sbjct: 965 CSILEPDCEACQ 976


>gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira
           multiformis ATCC 25196]
 gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 956

 Score = 1044 bits (2700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/960 (56%), Positives = 703/960 (73%), Gaps = 25/960 (2%)

Query: 11  DEDAFPSLA-YPFPE-------KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           D+   P++A Y F         +    ++I+RNG V  F+P+KIS A+ KAF+AVEG   
Sbjct: 6   DQTPRPAMAGYEFSSNPSGHDPRYSQYKIIRRNGSVAGFEPNKISIAMTKAFLAVEGSQG 65

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV++++  LTE  V  L++   S    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 66  AASARVREVVARLTEDVVNALMRRQPSGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 125

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181
           E+R+  RA Q  + +       L ++ +DG  +  ++ RL  ++   C GL + V   ++
Sbjct: 126 EDRARKRAQQKEAGAAEAAGSVLNVL-EDGRRVPLDTARLLALIGSCCEGLGEGVDPALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L  T K++YDG+   ++  ++I S+R L+EKEP Y+ VTAR LL  LR EVL       +
Sbjct: 185 LKATLKDLYDGVPMEEVRKSVILSARALLEKEPAYSYVTARLLLHSLRFEVLG------E 238

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    EM   Y EYF  +I+ G++A LL E +  FDL  LA  L  ERD  F YLGLQ L
Sbjct: 239 EIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQFDLPRLAQALHAERDLKFGYLGLQTL 298

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI   RIE+PQAFFMRVAMGLAL E ++E RA+EFY++LS+F FM STPTLFNS
Sbjct: 299 YDRYFLHIQERRIELPQAFFMRVAMGLALNEIDREARAIEFYHVLSNFDFMSSTPTLFNS 358

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR  QLSSC+LTTVPDDL GI+  ++ENA+LAKY+GGLGNDWT VR +G+HI GTNGKS
Sbjct: 359 GTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAKYAGGLGNDWTRVRAMGSHIKGTNGKS 418

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV +DTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 419 QGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNT 478

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFMKRV +   WTLFSP +V DLH+ YGK FE AY  YE +  RGE+ +++ I 
Sbjct: 479 ATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYGKAFEQAYLAYEDKVARGELDLYKTIP 538

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV LWRKML+MLFETGHPWITFKD CNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCN
Sbjct: 539 AVQLWRKMLSMLFETGHPWITFKDACNIRSPQNHIGVVHSSNLCTEITLNTNDQEIAVCN 598

Query: 602 LGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           LGSINL AH  +  + D DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+
Sbjct: 599 LGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDNVIDINFYAVAKARNSNLRHRPVGLGI 658

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ  LH + IPYAS EAVE AD +ME +++HA  AS ELA+ERG Y+S++GSLWD+G+
Sbjct: 659 MGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHAYWASTELAEERGRYASYRGSLWDRGI 718

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P D++ LL E R   +  +R+S L W+ L++R++  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 719 LPQDTLDLLQEERGGYIEADRSSTLDWEALRERIRNHGMRNSNCLAIAPTATISNIVGVS 778

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+P+++NLYVKSN+SG+FT+ N +LV++LK+  LWDE MISD+KY DG++G I+R+P 
Sbjct: 779 ASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKKLGLWDEVMISDIKYFDGALGKIDRVPT 838

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +L+K++ATAFE++P WLIE+A+RRQKWIDQ+QSLN+Y+   SGKKLD  Y+ AW+ GLKT
Sbjct: 839 ELRKLYATAFEVEPQWLIEAAARRQKWIDQSQSLNIYIASVSGKKLDETYKLAWVRGLKT 898

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-----SCTSDTECEVCQ 954
           TYYLRS  ATS EKST++   G LNAVP      +  +  +P+         D ECE CQ
Sbjct: 899 TYYLRSLGATSAEKSTVQA--GSLNAVPAEGSLPAMGAAAVPATDVSFCSVDDPECESCQ 956


>gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
 gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
          Length = 949

 Score = 1043 bits (2698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/955 (58%), Positives = 697/955 (72%), Gaps = 21/955 (2%)

Query: 9   KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           +G   A    A          + I+RNG V  F+P KIS A+ KAF+A+ G   + S  +
Sbjct: 7   EGQTAAELGRAAAPQADFSQYKTIRRNGAVVPFEPVKISIAMTKAFLAIMGHQGATSASI 66

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +D +  LTE  V+ L++       +HIEDIQDQVE SLM++G H + R YVLYREERS  
Sbjct: 67  RDKVAQLTEMVVSALMRRKPEGGAIHIEDIQDQVELSLMRAGEHDVARAYVLYREERSRE 126

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           RAA+  + +       + ++  +G  +  +  +L   +E AC GL +     +L+ET KN
Sbjct: 127 RAARGEALTQI----TINVVRKNGAKLPLDIAKLRATIESACVGLAETDVDAILTETLKN 182

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+SE ++  + I ++R +IE++P Y  VTAR LL  +R E+L       +  +  EM
Sbjct: 183 IYDGVSEEEVNKSAILAARAMIEQDPAYDYVTARLLLNNIRLEILG------EAVSQEEM 236

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y  YF + I++G+ A LL E + ++DL  L   L   RD  F YLGLQ LYDRYFLH
Sbjct: 237 GECYVSYFPQAIKKGIAAELLDERLGEYDLKKLGAALDASRDLQFGYLGLQTLYDRYFLH 296

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG+RIEMPQAF+MRVAMGLAL E E+E RA+EFYN+LSSF FM STPTLFNSGTR  QL
Sbjct: 297 VNGTRIEMPQAFYMRVAMGLALNEVEREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQL 356

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTT+ DDL GI+  ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL
Sbjct: 357 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 416

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 417 KVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDL 476

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV   A WTL SP E  DLHDL G  FE  Y+ YE  A RGEIKV ++I A++LWRK
Sbjct: 477 FMKRVMDGAEWTLLSPSECPDLHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRK 536

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPWITFKDPCNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL 
Sbjct: 537 MLTMLFETGHPWITFKDPCNIRSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLA 596

Query: 609 AHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            H  A+   D  KL  TIR A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L
Sbjct: 597 RHMQADGTLDGAKLQRTIRIAMRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 656

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H+  IPYAS EAVE ADESME +++HA  AS ELAQERG Y S+KGSLWD+GV P DSI 
Sbjct: 657 HMKRIPYASQEAVEFADESMELVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSIN 716

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLA  R   L ++RT RL W++L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+Y
Sbjct: 717 LLAAERGGYLDVDRTERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTY 776

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNL+VKSN+SG+FTV N  LV +LK+  LWDE M+SDLKY DGS+G I+RIP +LK I+A
Sbjct: 777 QNLFVKSNLSGEFTVTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYA 836

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP WL+++ASRRQKWIDQAQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ 
Sbjct: 837 TAFEMDPKWLVDAASRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTL 896

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPN-------SSTHSLGIPSSCTSDTECEVCQ 954
           +ATS EKST +G  G+LNAV  T P         +T +         + +CE CQ
Sbjct: 897 AATSAEKSTGRG--GELNAVSATTPAVSAAPEVDNTPATDAKFCSIDNPDCEACQ 949


>gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           longbeachae NSW150]
 gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Legionella longbeachae NSW150]
          Length = 941

 Score = 1043 bits (2696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 568/956 (59%), Positives = 705/956 (73%), Gaps = 21/956 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + P  DV +  +     L    P  +K    IKRNG V ++D +KI  AI KAF+A EG 
Sbjct: 5   LDPVNDVPQISQL---ELTANAPGLLKT---IKRNGKVVNYDDTKIKIAITKAFIADEGG 58

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            AS S R+   I+ LT Q      +   S   VHIEDIQDQVE +LM+SGH+K+ R YVL
Sbjct: 59  TASTSDRIHQQIEELTRQITQVFKRRLPSGGAVHIEDIQDQVELALMRSGHYKVARAYVL 118

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREE    R  ++  K  A     L I M DG L   +++R++ IV EAC  L+ V ++ 
Sbjct: 119 YREEHRKAR--ENELKKQASDQKLLLITMPDGELKPLDTERMDTIVHEACRNLEHVDAEP 176

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V+ +  +N+Y+    +D+  ALI ++RTL+EKEPNY  V+AR LL+ LR E L  +  + 
Sbjct: 177 VIKDALRNLYNEAKFADVHKALIMAARTLVEKEPNYTYVSARLLLDCLRIEALHKLGIEA 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             AT  EM  LYP YF  Y+  G+K  +L E M DFDL  L   L  ERD  F YL LQ 
Sbjct: 237 -DATFDEMSQLYPAYFKIYVAHGIKQGMLDEKMADFDLEKLGKALLPERDMKFTYLSLQT 295

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLA++E +K ++A+EFY LLSSF +M STPTLFN
Sbjct: 296 LYDRYFIHDQGIRYELPQAFFMRVAMGLAIREKDKNEKAIEFYQLLSSFDYMSSTPTLFN 355

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR +G+HI GTNGK
Sbjct: 356 SGTIRPQLSSCYLTTVPDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGSHIKGTNGK 415

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFL VA+ TAVAVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMN
Sbjct: 416 SQGVVPFLNVADATAVAVNQGGKRKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMN 475

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA WIPDLFM RV ++A WTLFSPDEV +LHD +GK FE  Y  YE +A +G +K  + +
Sbjct: 476 TALWIPDLFMMRVREDADWTLFSPDEVPELHDQFGKAFEALYNKYEEKAHQGLMKNVKTV 535

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAV LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S EE AVC
Sbjct: 536 SAVKLWRKMLSMLFETGHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEEEIAVC 595

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL AH  N + D +KL  TI+TAVR+LDNVIDIN +++ +A+ SN  HR +GLGL
Sbjct: 596 NLGSINLPAHIKNGKLDIEKLKQTIKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGL 655

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+ L I YAS EAVE AD SME IS++AI AS +LA+ERG+YSS++GSLW +G+
Sbjct: 656 MGFQDALYELKIDYASEEAVEFADSSMELISYYAIEASCDLAKERGSYSSYEGSLWSKGI 715

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LL + R++ L  +R+ RL W+ L+ +V+T GMRNSN MAIAPTATI+NICGV+
Sbjct: 716 LPIDSINLLQQARNKYLEQDRSQRLDWESLRIKVRTQGMRNSNVMAIAPTATISNICGVA 775

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK  +LWDE M++DLKY +GS+  I RIP 
Sbjct: 776 QSIEPTYQNLYVKSNLSGEFTVINPYLVADLKALELWDEVMVNDLKYFNGSVQPISRIPA 835

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLKK +AT+FEIDP+WL+++ASRRQKWIDQAQSLN+Y+ EPSGKKLD +Y  AW+ GLKT
Sbjct: 836 DLKKRYATSFEIDPIWLVDAASRRQKWIDQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKT 895

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  A++ EKST+   D  LNAV +            P +C+  D +CE CQ
Sbjct: 896 TYYLRSMGASNAEKSTV--TDSALNAVKI--------MTEAPKACSILDPDCEACQ 941


>gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 953

 Score = 1042 bits (2695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/947 (57%), Positives = 691/947 (72%), Gaps = 8/947 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G      +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQPSQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRT-PEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVAAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R E  ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           YLR+ +ATS EKST+    GKLNAV          ++  P    +  
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAP 949


>gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
 gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
          Length = 995

 Score = 1040 bits (2688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/993 (55%), Positives = 688/993 (69%), Gaps = 54/993 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEQGAPALAPQATFA------DYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R       +          ++D+G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACEGLGAAVNPDP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 245 EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------- 929
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSSG 962

Query: 930 --DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
             D  +          CT         ECE CQ
Sbjct: 963 ALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995


>gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Lens]
 gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens]
          Length = 942

 Score = 1040 bits (2688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/956 (58%), Positives = 704/956 (73%), Gaps = 20/956 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + P KD+   ++     L    P  +K    IKRNG V  +D +KI  AI KAF+A EG 
Sbjct: 5   LEPVKDIPLTNQL---ELTANVPGLLKT---IKRNGKVVIYDDTKIKIAITKAFIADEGG 58

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A  S R+   I+ LT Q      +   S   +HIE+IQDQVE +LM+SGH+K+ R YVL
Sbjct: 59  TAPTSDRIHQQIEELTRQITQVFKRRLPSGGAIHIEEIQDQVELALMRSGHYKVARSYVL 118

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREER   R ++S  K     +  L I M +G +   +  R+  IV+E+C  L +V ++ 
Sbjct: 119 YREERRKARESESKQK-QTKDSKHLLITMPNGEVQPLDMDRVNTIVKESCRDLSNVKAEP 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V+ +  +N+Y+     D+  ALI S+R L+EKEPNY  V+AR LL+ LR E LT +  K 
Sbjct: 178 VIKDALRNLYNQAKYEDVHKALIMSARALVEKEPNYTYVSARLLLDSLRSEALTKLNIK- 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +AT  EM  +YP YF  YIE+G+   +L   M DFDL  L+  L  ERD  F YL LQ 
Sbjct: 237 SEATFDEMAQIYPVYFKSYIEQGIAQGMLDPKMTDFDLDKLSQALLPERDMKFTYLSLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLAL+E  KE++A+EFY LLSSF +M STPTLFN
Sbjct: 297 LYDRYFIHERGVRYELPQAFFMRVAMGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR +GAHI GTNGK
Sbjct: 357 SGTVRPQLSSCYLTTVPDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGK 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFL VA+ TAVAVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLNVADATAVAVNQGGKRKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA W+PDLFMKRV ++  WTLFSPDEV DLHD YGK FE  Y  YE +A +G I+  + I
Sbjct: 477 TALWVPDLFMKRVREDGNWTLFSPDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTI 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            AV LWR+ML+MLFETGHPW+TFKDPCN+RSPQQH GV+HSSNLCTEITLN+S EE AVC
Sbjct: 537 PAVKLWRRMLSMLFETGHPWLTFKDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL AH  N + D  KL  TI TA+R+LDNVIDIN +++ +A+ SN  HR IGLG+
Sbjct: 597 NLGSINLPAHIKNGKLDEQKLKRTISTAIRMLDNVIDINYYSVPQARNSNLQHRPIGLGI 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+ L + YAS EA+E AD SME IS++AI AS +LA+ERG+YS+++GSLW +G+
Sbjct: 657 MGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGI 716

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LL + R++ L  +R+ +L W+ L+ +V+T GMRNSN MAIAPTATI+NICGVS
Sbjct: 717 LPIDSINLLQQSRNKYLEQDRSQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVS 776

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV +LK  +LWDE M++DLKY +GS+  I RIP+
Sbjct: 777 QSIEPTYQNLYVKSNLSGEFTVVNPYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPE 836

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK  +AT+FEIDPMWL+E+ASRRQKWIDQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKT
Sbjct: 837 ELKSRYATSFEIDPMWLVEAASRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT 896

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  A++ EKST+   DG LNAV + D          P +C+  D +CE CQ
Sbjct: 897 TYYLRSLGASNAEKSTV--TDGALNAVKLIDTE--------PKACSITDPDCEACQ 942


>gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
 gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
          Length = 995

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/993 (55%), Positives = 688/993 (69%), Gaps = 54/993 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEQGAPALAPQATFA------DYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R       +          ++D+G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 245 EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------- 929
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSSG 962

Query: 930 --DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
             D  +          CT         ECE CQ
Sbjct: 963 ALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995


>gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b]
          Length = 942

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/956 (59%), Positives = 706/956 (73%), Gaps = 20/956 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + P KD+   ++     L    P  +K    IKRNG V  +D +KI  AI KAF+A EG 
Sbjct: 5   LEPVKDIPLTNQL---ELTANVPGMLKT---IKRNGKVVIYDDTKIKIAITKAFIADEGG 58

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A  S R+   I+ LT Q      +   S   +HIE+IQDQVE +LM+SGH+K+ R YVL
Sbjct: 59  TAPTSDRIHQQIEELTRQITQVFKRRLPSGGAIHIEEIQDQVELALMRSGHYKVARSYVL 118

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREER   R ++S  K     +  L I M +G +   +  R+  IV+E+C  L +V ++ 
Sbjct: 119 YREERRKARESESKQK-QTKDSKHLLITMPNGEVQPLDMDRVNTIVKESCRDLSNVKAEP 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V+ +  +N+Y+     D+  ALI S+R L+EKEPNY  V+AR LL+ LR E LT +  K 
Sbjct: 178 VIKDALRNLYNQAKYEDVHKALIMSARALVEKEPNYTYVSARLLLDSLRSEALTKLNIK- 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +AT  EM  +YP YF  YIE+G+   +L   M DFDL  L+  L  ERD  F YL LQ 
Sbjct: 237 SEATFDEMAQIYPVYFKSYIEQGIAQGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLAL+E  KE++A+EFY LLSSF +M STPTLFN
Sbjct: 297 LYDRYFIHERGVRYELPQAFFMRVAMGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR +GAHI GTNGK
Sbjct: 357 SGTVRPQLSSCYLTTVPDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGK 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFL VA+ TAVAVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLNVADATAVAVNQGGKRKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA W+PDLFMKRV ++  WTLFSPDEV DLHD YGK FE  Y  YE +A +G I+  + I
Sbjct: 477 TALWVPDLFMKRVREDGNWTLFSPDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTI 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAV LWR+ML+MLFETGHPW+TFKDPCN+RSPQQH GV+HSSNLCTEITLN+S EE AVC
Sbjct: 537 SAVKLWRRMLSMLFETGHPWLTFKDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL AH  N + D  KL  TI TAVR+LDNVIDIN +++ +A+ SN  HR IGLG+
Sbjct: 597 NLGSINLPAHIKNGKLDEQKLKRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGI 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+ L + YAS EA+E AD SME IS++AI AS +LA+ERG+YS+++GSLW +G+
Sbjct: 657 MGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGI 716

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LL + R++ L  +R+ +L W+ L+ +V+T GMRNSN MAIAPTATI+NICGVS
Sbjct: 717 LPIDSINLLQQSRNKYLEQDRSQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVS 776

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV +LK  +LWDE M++DLKY +GS+  I RIPD
Sbjct: 777 QSIEPTYQNLYVKSNLSGEFTVVNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPD 836

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK+ +AT+FEIDPMWL+E+ASRRQKWIDQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKT
Sbjct: 837 ELKRRYATSFEIDPMWLVEAASRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT 896

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  A++ EKST+   DG LNAV + D          P +C+  D +CE CQ
Sbjct: 897 TYYLRSLGASNAEKSTV--TDGALNAVKLIDTE--------PKACSITDPDCEACQ 942


>gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phymatum STM815]
 gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phymatum STM815]
          Length = 997

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/999 (55%), Positives = 702/999 (70%), Gaps = 65/999 (6%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P + + +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 18  RPVEGLAQGADALAPQTGYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 71

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM++G H + R YVLY
Sbjct: 72  GAASARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRTGEHNVARAYVLY 131

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R+  R      + DAP+A  L +  D+G     +   L  ++E AC+ L D V+++ 
Sbjct: 132 REKRTQERG----HEVDAPVASGLNVT-DNGVTRPLDMAALRGLIESACANLGDAVNAEP 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VT+R LL  +RRE+L       
Sbjct: 187 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILE------ 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF  +I+ GV A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 241 EEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI+G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 301 LYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 361 SGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 481 TANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 541 PAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 600

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 601 NLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRP 660

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LH+L  PYAS EAVE AD SME + ++A  AS ELA+ERG YS+++GSL
Sbjct: 661 VGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAVCYYAYWASTELAEERGRYSTYRGSL 720

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLA+ R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 721 WDRGILPQDTLKLLADARGGYVEVDSSESMDWASLRSRIATHGMRNSNCVAIAPTATISN 780

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I
Sbjct: 781 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLSRI 840

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+D  WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 841 DRVPADLRAIYATAFEVDATWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 900

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------------------------ 930
            GLKTTYYLR+ +AT VEKST+    G LNAVP  D                        
Sbjct: 901 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGDGGAGSFGVGGGAASSGTKGGFQAS 958

Query: 931 ---------PNSSTHSLGIPSSCTSDT------ECEVCQ 954
                    P            C          ECE CQ
Sbjct: 959 AASAAATSVPAVEAAPEADGPVCMMRPGDPGFEECEACQ 997


>gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella
           chejuensis KCTC 2396]
 gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 953

 Score = 1039 bits (2686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/929 (58%), Positives = 685/929 (73%), Gaps = 8/929 (0%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G    FD  KI+ A+ KAF+AVEG+ AS S RV+D ++ L +  V RL + + 
Sbjct: 30  LQVIKRTGQAAPFDDRKIAMAVTKAFLAVEGQSASGSPRVRDSVEKLVKDIVARLRRRSP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               VHIE+IQD VE  LM+ G HK+ R YVLYREE +  RA    S+      P + + 
Sbjct: 90  EGGSVHIEEIQDLVELGLMRGGFHKVARAYVLYREEHARQRAPAP-SEQSGETHPDINVK 148

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DG+    N  RL  ++ +AC+ L  VS + VL    KN+Y+G+   D+  AL+ ++R 
Sbjct: 149 FADGSEAPLNMGRLRTVISDACADLDGVSEEKVLQGALKNLYNGVKHKDVNAALVMAARP 208

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIE+EPNY+ V AR LL+ LR E L+ +      AT  EM  LYP  F   +E  V+  L
Sbjct: 209 LIEEEPNYSYVCARLLLDGLREESLSYL-NIAASATEGEMAELYPTAFRAIVERCVEHEL 267

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  L   LK ERD    YLGLQ LYDRYF+H   +R+E+PQAFFMRVAMGL
Sbjct: 268 LSPELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRVAMGL 327

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +++E +   RA+EFY+LLSSF +MCSTPTLFN+GT  PQLSSC+LTTVPDDL GI+GA++
Sbjct: 328 SVQEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIYGAIK 387

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 388 DNALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 447

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMN+ANWIPDLFMKRV ++  WTLFSP +  
Sbjct: 448 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSPSDAP 507

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG  FE  Y +YE   + G I +F+K+ A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 508 DLHDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFKDPCN 567

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+ H  N + D+D+L +T+ TA
Sbjct: 568 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNTVYTA 627

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +A+ +N  HR +G+GLMGFQ AL+ L +PY+S EAV  AD+SME
Sbjct: 628 VRMLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFADQSME 687

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLPW 746
            IS+ AI+AS  LA+ERG Y +++GSLWDQGV PIDS+  L + R      ++R   L W
Sbjct: 688 LISYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGHSLDW 747

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             +++ VK  GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 748 APVRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVINPWL 807

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK RDLWD  M++DLKY DGS+  I+RIP+D+K++  TAFEIDP WL+E+ASRRQKW
Sbjct: 808 VQELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASRRQKW 867

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ QSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT +EK +  G     NA 
Sbjct: 868 IDQGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEKIS-SGASQSDNAK 926

Query: 927 PVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           P  D + + +    P  C+  D +CE CQ
Sbjct: 927 P--DVDDTENQEPQPKFCSILDPDCEACQ 953


>gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 997

 Score = 1038 bits (2685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/993 (55%), Positives = 688/993 (69%), Gaps = 54/993 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 19  RPLGGAEQGAPALAPQATFA------DYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 72

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 73  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R       +          ++D+G     +   L  ++  AC GL   V+   
Sbjct: 133 REKRHLERQHAGEETAAVRETTGGINVVDNGVTRPLDMNALRALIVSACDGLGAAVNPDP 192

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 193 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 246

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 247 EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQT 306

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 307 LYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 366

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 367 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 426

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 427 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 486

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+KI
Sbjct: 487 TANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKKI 546

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 547 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 606

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 607 NLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 666

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 667 VGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 726

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 727 WDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATISN 786

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 787 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 846

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 847 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 906

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------- 929
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 907 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSSG 964

Query: 930 --DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
             D  +          CT         ECE CQ
Sbjct: 965 ALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 997


>gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
 gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
          Length = 950

 Score = 1038 bits (2684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/935 (58%), Positives = 689/935 (73%), Gaps = 17/935 (1%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++ +  LTE  V  L++
Sbjct: 27  VSGYQIIRRNGSVVAFEPNKIAVALMKAFLAVHGAQGAASASVRETVDQLTEGVVRALVR 86

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   HIED+QD VE  LM+ GHH++ R YVLYRE R+  R+ Q+ +   A    +L
Sbjct: 87  SRPGGGTFHIEDVQDHVELGLMRGGHHEVARAYVLYRERRAQERSRQAAAPQPAAP--EL 144

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++   G  +  +   L  +VE+AC+GL +DV ++ +L+ET +N+YDG+   ++  A I 
Sbjct: 145 HVVDG-GQRLPLDLDALRSLVEQACAGLGEDVRAEPILAETRRNLYDGVPLDEVYKAAIL 203

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +SRTLIEK+P Y + TAR LL  +RRE+L    +         M   Y EYF  Y+ +GV
Sbjct: 204 ASRTLIEKDPAYTRATARLLLHTIRREILGADVRP------EAMAARYAEYFPAYVRQGV 257

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYFLH++G RIE+PQAFFMRV
Sbjct: 258 QAELLDEELQRFDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRV 317

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY++LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 318 AMGLALNEIDREARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 377

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 378 EALKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 437

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP
Sbjct: 438 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSP 497

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD +G  FE AY  YER+ADRGEI+ F+++ A  LWRKMLTMLFETGHPWITFK
Sbjct: 498 SSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFK 557

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D CN+RSPQQHVGVVHSSNLCTEITLN+S+ E AVCNLGSINL  H A    D  KL  T
Sbjct: 558 DACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRT 617

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN + ++KA+ +N  HR +GLGLMGFQ  L+ L +PYAS  AVE AD
Sbjct: 618 VSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFAD 677

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSR 743
            SME + +HA  AS ELA+ERG YSS++GSLWD+GV P D++ LLA  R   + ++R+  
Sbjct: 678 RSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDRSET 737

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W  L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTVVN
Sbjct: 738 LDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVN 797

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+ DGS+  ++R+PD+LK+++ATAFE+D  WL+E+A+RR
Sbjct: 798 EYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARR 857

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLR+ SAT  EKST+    G +
Sbjct: 858 QKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTV--APGAM 915

Query: 924 NAVPV---TDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           NAVP     +  ++         C+ D  +CE CQ
Sbjct: 916 NAVPRHGGLEAAAAAEPASDVRFCSIDNPDCEACQ 950


>gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Paris]
 gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris]
          Length = 942

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/956 (59%), Positives = 706/956 (73%), Gaps = 20/956 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + P KD+   ++     L    P  +K    IKRNG V  +D +KI  AI KAF+A EG 
Sbjct: 5   LEPVKDIPLTNQL---ELTANVPGMLKT---IKRNGKVVIYDDTKIKIAITKAFIADEGG 58

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A  S R+   I+ LT Q      +   S   +HIE+IQDQVE +LM+SGH+K+ R YVL
Sbjct: 59  TAPTSDRIHQQIEELTRQITQVFKRRLPSGGAIHIEEIQDQVELALMRSGHYKVARSYVL 118

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREER   R ++S  K     +  L I M +G +   +  R+  IV+E+C  L +V ++ 
Sbjct: 119 YREERRKARESESKQK-QTKDSKHLLITMPNGEVQPLDMDRVNTIVKESCRDLSNVKAEP 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V+ +  +N+Y+     D+  ALI S+R L+EKEPNY  V+AR LL+ LR E LT +  K 
Sbjct: 178 VIKDALRNLYNQAKYEDVHKALIMSARALVEKEPNYTYVSARLLLDSLRSEALTKLNIK- 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +AT  EM  +YP YF  YIE+G+   +L   M DFDL  L+  L  ERD  F YL LQ 
Sbjct: 237 SEATFDEMAQIYPVYFKSYIEQGIAQGMLDPKMADFDLDKLSQALLPERDMKFTYLSLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLAL+E  KE++A+EFY LLSSF +M STPTLFN
Sbjct: 297 LYDRYFIHERGVRYELPQAFFMRVAMGLALREQHKEEKAIEFYQLLSSFDYMSSTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR +GAHI GTNGK
Sbjct: 357 SGTVRPQLSSCYLTTVPDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGAHIKGTNGK 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFL VA+ TAVAVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLNVADATAVAVNQGGKRKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA W+PDLFMKRV ++  WTLFSPDEV DLHD YGK FE  Y  YE +A +G I+  + I
Sbjct: 477 TALWVPDLFMKRVREDGNWTLFSPDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTI 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAV LWR+ML+MLFETGHPW+TFKDPCN+RSPQQH GV+HSSNLCTEITLN+S EE AVC
Sbjct: 537 SAVKLWRRMLSMLFETGHPWLTFKDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL AH  N + D  KL  TI TAVR+LDNVIDIN +++ +A+ SN  HR IGLG+
Sbjct: 597 NLGSVNLPAHIKNGKLDEQKLKRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGI 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+ L + YAS EA+E AD SME IS++AI AS +LA+ERG+YS+++GSLW +G+
Sbjct: 657 MGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGI 716

Query: 721 FPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LL + R++ L  +R+ +L W+ L+ +V+T GMRNSN MAIAPTATI+NICGVS
Sbjct: 717 LPIDSINLLQQSRNKYLEQDRSQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVS 776

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV +LK  +LWDE M++DLKY +GS+  I RIP+
Sbjct: 777 QSIEPTYQNLYVKSNLSGEFTVVNPYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPE 836

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK+ +AT+FEIDPMWL+E+ASRRQKWIDQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKT
Sbjct: 837 ELKRRYATSFEIDPMWLVEAASRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT 896

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  A++ EKST+   DG LNAV + D          P +C+  D +CE CQ
Sbjct: 897 TYYLRSLGASNAEKSTV--TDGALNAVKLIDTE--------PKACSITDPDCEACQ 942


>gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ubonensis Bu]
          Length = 990

 Score = 1038 bits (2683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/989 (55%), Positives = 689/989 (69%), Gaps = 51/989 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R            A  + ++ D+G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERQHAGEEAPAVESAGGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EM   Y EYF ++++ GV A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 244 EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDANRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++GSRIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVDGSRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 603

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVPKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 664 VGMGIMGFQDCLHLLRTPYASQAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 723

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W EL+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWSELRSRIAAHGMRNSNCVAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 844 DRVPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------------------- 932
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGAGGAQGAAGGFGATGGDASAAGT 961

Query: 933 -SSTHSLGIPSSCTSDT------ECEVCQ 954
            ++         C          ECE CQ
Sbjct: 962 VNAAPVEAEGPVCMMRPGDPGFDECEACQ 990


>gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium
           violaceum ATCC 12472]
 gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 972

 Score = 1037 bits (2682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/954 (57%), Positives = 697/954 (73%), Gaps = 20/954 (2%)

Query: 9   KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           +G   A    A          + I+RNG V  F+P KIS A+ KAF+AV G   + S  +
Sbjct: 31  EGQTAAELGRAAAPQADFSLYKTIRRNGAVVPFEPVKISIAMTKAFLAVMGNQGATSASI 90

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +D +  LTEQ V  L++       +HIEDIQDQVE SLM+ G H + R YVLYRE+RS  
Sbjct: 91  RDKVAQLTEQVVNALMRRKPEGGAIHIEDIQDQVELSLMRFGEHDVARAYVLYREQRSQE 150

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           RAA+  + +      ++ ++  DG  +  +  RL   +E A   L  +    +L+ET KN
Sbjct: 151 RAARGEALTSV----QINVLRKDGRKLPLDVPRLRASIEAASKNLAGIDVDAILAETLKN 206

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+ E ++  + I ++R++IE++P Y  VTAR L+  +R E+L       +  +  EM
Sbjct: 207 IYDGVPEEEVGKSAILAARSMIEQDPAYDYVTARLLMGNIRLEILG------EAVSQDEM 260

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y  YF  YI++G+ A LL E + ++DL  L   L  ERD  F YLGLQ LYDRYFLH
Sbjct: 261 GKQYAPYFADYIKKGIAAELLDEKLAEYDLKKLGAALDAERDLQFGYLGLQTLYDRYFLH 320

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           ++G+RIEMPQAF+MRVAMGLAL E  +E RA+EFY +LSSF FM STPTLFNSGTR  QL
Sbjct: 321 VDGTRIEMPQAFYMRVAMGLALNEVNREDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQL 380

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTT+ DDL GI+  ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL
Sbjct: 381 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 440

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVCAYLETWH D+EEFL+LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 441 KVVNDTAVAVNQGGKRKGAVCAYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDL 500

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +   W+LFSP E  DLHDLYG+ FE AY  YE +  RGE+KV+++I A++LWRK
Sbjct: 501 FMKRVMEGGDWSLFSPSETPDLHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRK 560

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPW+TFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL 
Sbjct: 561 MLTMLFETGHPWVTFKDPCNIRSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLS 620

Query: 609 AHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           AH   +   D DKL  TIRTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L
Sbjct: 621 AHLKEDGSLDADKLQRTIRTALRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 680

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H+  +PY S  AVE ADESME +++ A  AS ELA+ERG Y S+ GSLWD+GV P DSI 
Sbjct: 681 HIKRVPYGSNAAVEFADESMEMVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSIN 740

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLA  R   L ++RT R+ W++L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+Y
Sbjct: 741 LLAAERGGYLEVDRTERMDWNKLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTY 800

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNL+VKSN+SG+FTV N +LV +LK   LWDE M++DLKY DGS+G I+R+P +LK I+A
Sbjct: 801 QNLFVKSNLSGEFTVTNEYLVRDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYA 860

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP WL+E+ASRRQKWIDQAQSLNLY+   SGKKLD +Y+ AWL GLKTTYYLR+ 
Sbjct: 861 TAFEVDPKWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTL 920

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS-----CTSD-TECEVCQ 954
           +ATS EKST +G  G+LNAV      +   ++    +     C+ D  +CE CQ
Sbjct: 921 AATSAEKSTGRG--GELNAVSSQAQTAPAAAVDNTPATDAKFCSIDNPDCESCQ 972


>gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
 gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
          Length = 967

 Score = 1037 bits (2680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/914 (61%), Positives = 693/914 (75%), Gaps = 9/914 (0%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
              PS A   P     V+VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++
Sbjct: 28  QRPPSAAEGAPS---AVRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVV 84

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ    LL+H      +HIE IQDQVE +LM+ GHHK+ R YVLYR+ER    A  
Sbjct: 85  AELTEQVEAALLRHTGPETALHIEQIQDQVELALMRGGHHKVARAYVLYRDER----AKA 140

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             + + A     L +   DGTL   +  R+  +V EA +GL+DVS++ VL+E  +N+YDG
Sbjct: 141 REAAAPAHAEVALSVKGADGTLRPLDWARVSHVVGEAVAGLEDVSAEPVLAEAKRNLYDG 200

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L  A I ++R L+E+EPNY+ V+AR LL+KLR E L+ +   P++A+  EM   Y
Sbjct: 201 ITADELALAQIMAARVLVEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEY 260

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
             YF  Y+   V+  L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H NG 
Sbjct: 261 APYFRAYLRRAVELELVDAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGV 320

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVAMGLA++E  +E RA+EFY LLS+FHFM STPTLFNSGT   QLSSCF
Sbjct: 321 RFELPQAFFMRVAMGLAIREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCF 380

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL  IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+AN
Sbjct: 381 LTTVDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIAN 440

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++R
Sbjct: 441 DTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRR 500

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  NA WTLFSP+E  DLHDLYG  F   Y  YE  A RGEIKVFRK+ AV LWR+MLTM
Sbjct: 501 VEANAEWTLFSPNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTM 560

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NLL H  
Sbjct: 561 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVT 620

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D ++L  T+RTAVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  L +
Sbjct: 621 PEGLDTERLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGV 680

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+AS EAV+ AD SME +S++AISAS +LA+ERG Y +F+GSLW +G+ PIDS+ LL + 
Sbjct: 681 PFASEEAVKFADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDA 740

Query: 733 R--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R  D L ++ ++ L W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNLY
Sbjct: 741 RQGDGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLY 800

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSNMSGDFTVVN  LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE
Sbjct: 801 VKSNMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFE 860

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           I+  W++++ S RQKWIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT 
Sbjct: 861 IESKWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATH 920

Query: 911 VEKSTLKGVDGKLN 924
           VEKSTL+G DGKLN
Sbjct: 921 VEKSTLRGTDGKLN 934


>gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha
           [Chromohalobacter salexigens DSM 3043]
 gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 976

 Score = 1036 bits (2679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/978 (56%), Positives = 687/978 (70%), Gaps = 44/978 (4%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
               S+    P++   ++VIKR G V +FD SKIS AI KAF+A EG  A+ S R+++ +
Sbjct: 7   PGKASVDITAPQR---LRVIKRGGEVAAFDGSKISVAITKAFIATEGDNAAASSRIREFV 63

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
              T+  V   L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  R  Q
Sbjct: 64  SEATQSIVDTFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARAR--Q 121

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                 A   P L +   DGT+   +  R+E +V +AC GL +V  + ++  + KN+YDG
Sbjct: 122 PQGADIAKPHPSLNVTQADGTVRPLDLGRVETLVADACEGLANVEPQKIVDASLKNLYDG 181

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +    + TAL+ ++RTL+EKEPNY   TAR L + LRRE L+ +     +AT+ EM  LY
Sbjct: 182 VPIDGVATALMMTARTLVEKEPNYTYATARLLQDNLRREALSFL-GIADEATYQEMATLY 240

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
              F  YI++G++   L E + +FDL  L   L + RD  F YLGLQ LYDRYFLH +  
Sbjct: 241 APAFKAYIDKGIEFEQLDERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHDDV 300

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ  FMRVAMGLAL E + E RA+EFY LLSSF +M STPTLFN+GT+  QLSSC+
Sbjct: 301 RYELPQVMFMRVAMGLALNEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSSCY 360

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD L GI+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 361 LTTVPDQLDGIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 420

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 421 DTAVAVNQGGKRKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 480

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP    DLHDLYG  FE  Y  YE     G++K+F+++ A  LWRKML+M
Sbjct: 481 VFDDEEWTLFSPSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKMLSM 540

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S++E AVCNLGS+NL  H  
Sbjct: 541 LFETGHPWITFKDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQHIV 600

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + Q D DKL  T++TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L I
Sbjct: 601 DGQLDGDKLKKTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQLGI 660

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            YAS +AV  AD SME IS+HAI AS +LA ERG Y SF+GSLW +GV PIDSI  LAE 
Sbjct: 661 AYASDDAVTFADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLAEE 720

Query: 733 R--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R  D + ++ ++   W  L+ +V   GMRNSN MAIAPTATI+NICGV+QSI+P+YQNL+
Sbjct: 721 RGADYIEVDTSTTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLF 780

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN+++VN+LK R LWDE MI+DLKY+DGS+  I+RIPDDLK  +A+AFE
Sbjct: 781 VKSNLSGEFTVVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFE 840

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E+A+RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  ATS
Sbjct: 841 VEPKWLVEAAARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGATS 900

Query: 911 VEKSTLKGVDGKLNAVPVTD---------------------------------PNSSTHS 937
           VEKST+    GKLNAV  T                                     S   
Sbjct: 901 VEKSTVD--RGKLNAVGNTGGSASPQPAAAPSPSPSPAASDAGGEARGIDDFLTGKSGSG 958

Query: 938 LGIPSSCTSDT-ECEVCQ 954
              PS+   D   CE CQ
Sbjct: 959 SRAPSAGDIDELGCEACQ 976


>gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax
           paradoxus S110]
 gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus S110]
          Length = 971

 Score = 1036 bits (2679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/972 (55%), Positives = 703/972 (72%), Gaps = 35/972 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           PS    +  + A      P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 15  PSTPTQQQRDTA----GSPAGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  +++        HIED+QDQVE  LM+ GHH+I R YVLYR
Sbjct: 71  AASASVRETVDALTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E R+  R+ Q   + +AP  P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +
Sbjct: 131 ERRTQERSKQ--VEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + +E++       +
Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPAE 247

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +AT       Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ L
Sbjct: 248 RAT------AYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  SRIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+
Sbjct: 302 YDRYFLHVRKSRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S
Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I 
Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NLL H  + + D +KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM
Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L IPYAS EAV+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELARERGKYSSYKGSLWDKGIL 721

Query: 722 PIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID++ LL + R   + ++R++ L W+ L++++K  GMRNSNC+AIAPTATI+NI GV  
Sbjct: 722 PIDTLDLLEKARGGYVEVDRSATLDWEALRQKIKADGMRNSNCVAIAPTATISNIIGVDA 781

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D
Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ATAFE++  WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 842 VKALYATAFEVETTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS------------------THSLGIPS 942
           YYLR++SAT  EKST++   G+LNAV      SS                    +  I  
Sbjct: 902 YYLRTQSATHAEKSTVQS--GRLNAVSSGSDASSGMSALEAAAAAAKAQMSAMPATDIAF 959

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 960 CGVDDPTCEACQ 971


>gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
            rhizoxinica HKI 454]
 gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1)
            [Burkholderia rhizoxinica HKI 454]
          Length = 1046

 Score = 1036 bits (2679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/990 (56%), Positives = 705/990 (71%), Gaps = 51/990 (5%)

Query: 4    SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
            +  +  G   A  + A      +   +VI+RNG V SF+PSKI+ A+ KAF+AV G   +
Sbjct: 69   AAGLPHGGGAAHGARALAPQATLADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGA 128

Query: 64   RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
             S RV++ ++ LT+  V  L++   +    HIEDIQDQVE +LM++G H + R YVLYRE
Sbjct: 129  ASARVRESVETLTQAVVRALVRSRPNGGTFHIEDIQDQVELALMRAGEHNVARAYVLYRE 188

Query: 124  ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVL 182
            +R+  RA   H  +  P    L +  D+G +   +   L  ++  AC GL + VS++ ++
Sbjct: 189  KRAAERA---HEVAQQPAQGGLNV-NDNGIVRPLDLAALRNVITAACDGLGEAVSAEPIV 244

Query: 183  SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            +ET KN+YDG+  S +  + I ++RT+IEKEP Y++VTAR LL  +RRE+L       ++
Sbjct: 245  AETVKNLYDGVPLSQVYDSAILAARTMIEKEPAYSQVTARLLLHTIRREILG------EE 298

Query: 243  ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
                EM   Y EYF ++++ GV+A LL E ++ FDL  L + L   RD  F YLGLQ LY
Sbjct: 299  VLQSEMGARYAEYFPQFLKRGVEAELLDEKLLQFDLKKLGDALDASRDLKFGYLGLQTLY 358

Query: 303  DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
            DRYFLH++G RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LS+F FM STPTLFNSG
Sbjct: 359  DRYFLHVDGQRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSTFDFMSSTPTLFNSG 418

Query: 363  TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            TR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQ
Sbjct: 419  TRRSQLSSCYLTTVADDLEGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQ 478

Query: 423  GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
            GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 479  GVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 538

Query: 483  NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            NWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +A RGE+K+F+KI A
Sbjct: 539  NWIPDLFMKRVIEGGDWTLFSPSSCPDLHDKFGAEFEQAYVAYEEKAARGELKLFKKIPA 598

Query: 543  VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
              LWRKML MLFETGHPWITFKDPC +RSPQQHVGVVHSSNLCTEITLN+S  E AVCNL
Sbjct: 599  AQLWRKMLGMLFETGHPWITFKDPCXVRSPQQHVGVVHSSNLCTEITLNTSDNEIAVCNL 658

Query: 603  GSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            GS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +G
Sbjct: 659  GSVNLVAHMKQGADXGYVLDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVG 718

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            +G+MGFQ  LHLL  PYAS +AVE AD SME I ++A  AS ELA ERG YSS++GSLWD
Sbjct: 719  MGIMGFQDCLHLLRTPYASQQAVEFADRSMEAICYYAYWASTELASERGRYSSYRGSLWD 778

Query: 718  QGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+ P D++ LLA+ R   + ++ +  + W  L++R+ T GMRNSNC+AIAPTATI+NI 
Sbjct: 779  RGILPQDTLKLLADSRGGYVEVDSSETMDWAALRERIATHGMRNSNCVAIAPTATISNII 838

Query: 777  GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+R
Sbjct: 839  GVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLARIDR 898

Query: 837  IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
            IP DL++ +ATAFE+DP WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL G
Sbjct: 899  IPADLRETYATAFEVDPKWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRG 958

Query: 897  LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP------------------NSSTHSL 938
            LKTTYYLR+ +AT VEKST+    G LNAVP +D                   N+  H+ 
Sbjct: 959  LKTTYYLRTIAATHVEKSTV--AHGALNAVPSSDGGVGAMHGAGGVSGSATARNAGVHAA 1016

Query: 939  GIPSS--------CTSDT------ECEVCQ 954
                S        C          ECE CQ
Sbjct: 1017 ADAGSQDEIAGPVCMLRPGDAGFDECEACQ 1046


>gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           thailandensis E264]
          Length = 995

 Score = 1036 bits (2679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/994 (56%), Positives = 710/994 (71%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P+LA          +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGA----PALASQA--TYADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGATGGD 961

Query: 930 DPNSSTHSLGIPS---SCTSDT------ECEVCQ 954
            P+ + ++  I +    CT         ECE CQ
Sbjct: 962 APSGAMNAAPIEADGPVCTMRPGDPGFEECEACQ 995


>gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei K96243]
 gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei ATCC 23344]
 gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1710b]
 gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei SAVP1]
 gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10229]
 gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 668]
 gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10247]
 gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1106a]
 gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 9]
 gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813880|ref|YP_002898331.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei
           K96243]
 gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 23344]
 gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710b]
 gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei SAVP1]
 gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 668]
 gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106a]
 gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
          Length = 995

 Score = 1036 bits (2678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/993 (55%), Positives = 703/993 (70%), Gaps = 54/993 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------D 930
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGDA 962

Query: 931 PNSSTHSLGIPS---SCTSDT------ECEVCQ 954
           P+ + ++  + +    CT         ECE CQ
Sbjct: 963 PSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995


>gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
 gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
          Length = 971

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/972 (55%), Positives = 702/972 (72%), Gaps = 35/972 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           PS  V +  + A      P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 15  PSTPVQQQRDTA----GSPTGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  +++        HIED+QDQVE  LM+ GHH+I R YVLYR
Sbjct: 71  AASASVRETVDVLTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E R+  R+ Q   + +AP  P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +
Sbjct: 131 ERRTQERSKQ--VEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + +E++        
Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPVD 247

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +AT       Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ L
Sbjct: 248 RAT------AYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+
Sbjct: 302 YDRYFLHVRKTRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S
Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I 
Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NLL H  + + D +KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM
Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L IPYAS EAV+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELAKERGKYSSYKGSLWDKGIL 721

Query: 722 PIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID++ LL + R   + ++R++ L WD L+ ++K  GMRNSNC+AIAPTATI+NI GV  
Sbjct: 722 PIDTLDLLEQARGGYVEVDRSATLDWDALRAKIKADGMRNSNCVAIAPTATISNIIGVDA 781

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D
Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ATAFE++  WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 842 VKALYATAFEVETTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS------------------THSLGIPS 942
           YYLR++SAT  EKST++   G+LNAV   +   S                    +  I  
Sbjct: 902 YYLRTQSATHAEKSTVQS--GRLNAVSSGNDAPSGMSALEAAAAAAKAQMSAMPATDIAF 959

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 960 CGVDDPTCEACQ 971


>gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 945

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/960 (58%), Positives = 702/960 (73%), Gaps = 40/960 (4%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           +  S A      +   +VI+RNG V  FD SKI  A+ KAF+AV+G   + S RV+D++ 
Sbjct: 7   SAQSEALEVRADLGRYRVIRRNGSVVPFDASKIQVAMTKAFLAVDGGTGAASARVRDLVG 66

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT Q V  L +       +HIEDIQDQVE +LM++G H++ R YVLYREER+  RA + 
Sbjct: 67  RLTAQVVETLERRQPGGGTLHIEDIQDQVELALMRAGEHEVARAYVLYREERARERAQKR 126

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
            +   +   P L++   DG+    + +RL  ++ EACSGL + VS   +L  T +N+YDG
Sbjct: 127 EASPASA--PILRVRHADGSEQPLDLERLRQVIGEACSGLGEAVSVDAILQATQRNLYDG 184

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +SE +L  A I + R LIE++P YA  TAR LL+++RREVL       + ATH EM   Y
Sbjct: 185 ISEEELFQAPILACRVLIEQDPAYAHATARLLLDRVRREVLG------EPATHAEMAQRY 238

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           PEYF  Y+  G++  LL   +  FDL  +A  L+ ERD  F+YLGLQILYDRYFLH+   
Sbjct: 239 PEYFKDYLRTGIQHELLDPRLAQFDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRER 298

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAF+MRVAMGLAL+E ++E++A+ FY +LS F F+ STPTLFN+GT  PQLSSCF
Sbjct: 299 RIELPQAFWMRVAMGLALEEIDREEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCF 358

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GI+ A+++NA+L+KYSGGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 359 LTTVADDLDGIYEAIKDNALLSKYSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 418

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+R
Sbjct: 419 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMER 478

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  WTLFSP+EV+DLHDL G+ F+  YE+YER AD GEI +F+++ A+ LWRKMLTM
Sbjct: 479 VEANGQWTLFSPNEVADLHDLTGQAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTM 538

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+AH  
Sbjct: 539 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLR 598

Query: 613 NN-----------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
                                D DKLA T+R A+R+LDNVID+N + + KA+ SN  HR 
Sbjct: 599 AGLPGQGLRTEASADELLALVDTDKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRP 658

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLGLMGF  AL  L IPYAS  AVE AD S E IS+HAI AS +LA+ERG+Y SF GSL
Sbjct: 659 VGLGLMGFSDALLALRIPYASQAAVEFADISQELISYHAIDASADLARERGSYRSFPGSL 718

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W QG+ P+DSI LLA  R   + ++R+ RL W+ L+ +VK  GMRNSNC+AIAPTATI+N
Sbjct: 719 WSQGILPLDSIELLARSRVAGVDVDRSQRLDWESLRTKVKG-GMRNSNCLAIAPTATISN 777

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVSQ I+P YQNLYVKSN+SG+FTVVN++LV +LK  DLWDE M++DLKY DGS+  I
Sbjct: 778 IVGVSQGIEPIYQNLYVKSNLSGEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPI 837

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP+ LK ++A AFEIDP WL+E+A+RRQKW+DQ+QSLNLY  +PSGKK+D  YR AW 
Sbjct: 838 DRIPEALKPLYANAFEIDPQWLVEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWR 897

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            GLKTTYYLRS  AT+ EKST+    G LNAVP            + +    D  CE CQ
Sbjct: 898 RGLKTTYYLRSLGATAAEKSTV--SKGVLNAVP----------GQVKACAIEDPGCEACQ 945


>gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 7894]
          Length = 995

 Score = 1035 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/993 (55%), Positives = 703/993 (70%), Gaps = 54/993 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGETEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------D 930
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGDA 962

Query: 931 PNSSTHSLGIPS---SCTSDT------ECEVCQ 954
           P+ + ++  + +    CT         ECE CQ
Sbjct: 963 PSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995


>gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Corby]
 gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila str. Corby]
          Length = 917

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/928 (60%), Positives = 697/928 (75%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 2   LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K     +  L I 
Sbjct: 62  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQK-QTKDSKHLLIT 120

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 121 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 180

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K  +AT  EM  +YP YF  YIE+G+   +
Sbjct: 181 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 239

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 240 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 299

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 300 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 359

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 360 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 419

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 420 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 479

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 480 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 539

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 540 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 599

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 600 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 659

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R++ L  +R+ +L W+
Sbjct: 660 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 719

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 720 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 780 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 839

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 840 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 897

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           + D          P +C+  D +CE CQ
Sbjct: 898 LIDTE--------PKACSITDPDCEACQ 917


>gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
 gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
          Length = 963

 Score = 1033 bits (2672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/958 (58%), Positives = 712/958 (74%), Gaps = 13/958 (1%)

Query: 4   SKDVNKGDEDAFP-SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           +  + K    ++  S+    P K   ++VIKRNG V  +   KI+ A+ KAF+AVEG  A
Sbjct: 12  TSPLEKSSTGSYQTSVTATAPGK---LRVIKRNGTVMPYAEDKIAIAVTKAFLAVEGGTA 68

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV + +K  T+Q      +   S   VHIEDIQDQVE +LM++G HK+ R+YVLYR
Sbjct: 69  AASSRVHETVKLFTQQISDTFNRRMPSGGTVHIEDIQDQVELTLMRNGEHKVARDYVLYR 128

Query: 123 EERSDVRAAQSHSKSDAPI--APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
            ER+ VRA+ + + S   +   PKL + +++G     +  R+  IV EAC GL DVS   
Sbjct: 129 AERARVRASATPAVSAEALSKYPKLNVTLENGDTAPLDMARIHTIVTEACEGLSDVSVDA 188

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L E  +N+YDG++ SD+ T+L+ ++RTL+EKEPNY+  TAR L +KLR E L  +    
Sbjct: 189 ILDEAMRNLYDGVALSDINTSLVITARTLVEKEPNYSYATARLLQDKLRAEALGFL-GIA 247

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ATHHEM   Y +    YIE+G++  LL  S+ +FD+  L   L + RD  F YLGLQ 
Sbjct: 248 EQATHHEMAHYYAQALPAYIEKGIELELLAPSLRNFDIPALGKALDHTRDSQFTYLGLQT 307

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H N  RIE+PQ FFMRVAMGLA++E +  +RA+EFY LLSSF +M STPTLFN
Sbjct: 308 LYDRYFIHSNDVRIELPQIFFMRVAMGLAVEEDKPTERAIEFYRLLSSFDYMSSTPTLFN 367

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 368 AGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGK 427

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 428 SQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 487

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANW+PDLFMKRV     WTLF+P E  DLHDL G  FE  YE YER ADRGEIK F++I
Sbjct: 488 TANWVPDLFMKRVFDKKEWTLFTPSEAPDLHDLCGTAFETRYEEYERMADRGEIKHFKRI 547

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-SEETAV 599
            A +LWRKML MLFETGHPWITFKD CN+RSPQQHVGV+HSSNLCTEITLN+S  +E AV
Sbjct: 548 PAESLWRKMLGMLFETGHPWITFKDSCNLRSPQQHVGVIHSSNLCTEITLNTSAGDEIAV 607

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+NL  H  N + +  KL +T+ TAVR+LDNVIDIN + +E A+ SN  HR IGLG
Sbjct: 608 CNLGSVNLAQHIENGELNTTKLEATVNTAVRMLDNVIDINYYAVEAARTSNMRHRPIGLG 667

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           LMGFQ AL+     Y+S +AVE AD SME IS+ AI+AS  LA ERG Y +F+GSLW +G
Sbjct: 668 LMGFQDALYKQGFAYSSDQAVEFADRSMEAISYFAINASSNLAAERGQYPTFEGSLWSKG 727

Query: 720 VFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             PIDSI  L + R E  + M+R+  L W  L+ +V+  GMRNSN MAIAPTATIANI G
Sbjct: 728 ELPIDSIETLVKQRGEKYIEMDRSQTLDWSSLRSKVQKQGMRNSNVMAIAPTATIANITG 787

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+YQNLYVKSN+SG+FTVVN +L+++LK+RDLWD  M++DLKY++GS+  +ERI
Sbjct: 788 VSQSIEPTYQNLYVKSNLSGEFTVVNPYLIHDLKKRDLWDAVMVNDLKYYEGSVQKVERI 847

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P DLK ++ATAFE++P W++ +ASRRQKW+DQAQSLNLY+   +GKKLD  YR AW  GL
Sbjct: 848 PADLKALYATAFEVEPRWIVSAASRRQKWLDQAQSLNLYIAGANGKKLDVTYRMAWYSGL 907

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           KTTYYLR+ SAT+ EKST+ G  G LNAV     +++  +  +P +C+ D  +CE CQ
Sbjct: 908 KTTYYLRALSATTTEKSTVSG--GTLNAVSSNAESAAPVAAAVPKACSIDEPDCEACQ 963


>gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 962

 Score = 1033 bits (2671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/943 (58%), Positives = 698/943 (74%), Gaps = 12/943 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
            L    P ++   +VIKRNG V S+D SKI+ AI KAF+AVEG  A+ S R+ + ++ L+
Sbjct: 27  ELQATAPGQV---RVIKRNGTVVSYDDSKIAVAITKAFLAVEGGSAAASSRIHETVEKLS 83

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q      +   S   +HIEDIQDQVE +LM+SG HK+ R+YVLYREER      +  + 
Sbjct: 84  LQVSAIFKRRMPSGGTIHIEDIQDQVELALMRSGEHKVARDYVLYREERRLQ-REEKKAS 142

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P +++ + DG+ +  +  R+E++V EAC GL DV +++++ E  KN+YDG+  +
Sbjct: 143 EPTKAHPTIRVTLSDGSQVPLDLGRMEVVVSEACDGLADVKAQVIIDEALKNLYDGVPIA 202

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T+L+ +SRTL+EKEPNY+ VTAR LL+ LR E L  +      AT  EM  LY +  
Sbjct: 203 DVNTSLVITSRTLVEKEPNYSYVTARLLLDNLRAEALPFL-GIANSATQSEMASLYAKAL 261

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             YI +G++  LL  +++D+DL  L   L   RD  F YLGLQ LYDRYF+H N  RIE+
Sbjct: 262 PAYINKGIELELLAPNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIEL 321

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLA +E  +E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTV
Sbjct: 322 PQIFFMRVAMGLAYREENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTV 381

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTAV
Sbjct: 382 PDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAV 441

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLFMKRV  +
Sbjct: 442 AVNQGGKRKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDD 501

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP++V DLHDLYG+ FE  Y  YE Q   G++K+F+ + A  LWRKML MLFET
Sbjct: 502 GEWTLFSPNDVPDLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFET 561

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H + N  
Sbjct: 562 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGL 621

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  KL  TI TAVR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+  H+ Y S
Sbjct: 622 DLSKLEKTITTAVRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGS 681

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--D 734
            +AVE AD SME IS+ AI AS  LA+ERG+YS+F+GSLW QG+ PIDS+  L   R  D
Sbjct: 682 DQAVEFADRSMEAISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGND 741

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++++  L W  L+ RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN
Sbjct: 742 YIDVDQSQTLDWSSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSN 801

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTVVN  LV +LK R LWD  M++DLKY++GS+ NI+R+P ++K+++ATAFE++P 
Sbjct: 802 LSGEFTVVNPHLVKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPR 861

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +AT  EKS
Sbjct: 862 WIVDAASRRQKWIDQAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKS 921

Query: 915 TLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDTECEVCQ 954
           T+    G LNAV         ++  +    +    D +CE CQ
Sbjct: 922 TID--TGSLNAVSSKTEAPVAAAGPAPVPEACSLDDPDCEACQ 962


>gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis C6786]
          Length = 944

 Score = 1032 bits (2669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/939 (58%), Positives = 688/939 (73%), Gaps = 21/939 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +      A     + D+G     +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVTDNGVTRPLDMSALHALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++SET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
            GLKTTYYLR+ +AT VEKST+    G LNAVP +  +S
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSS 941


>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha
           [Janthinobacterium sp. Marseille]
 gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium
           sp. Marseille]
          Length = 963

 Score = 1032 bits (2669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/960 (57%), Positives = 691/960 (71%), Gaps = 16/960 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  N       PS +      +   ++I+RNG V  F+PSKIS A+ KAF+AV G   
Sbjct: 12  PTEIGNIASLAVAPSTSNTQTVGLGEHRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 72  AASARVRELVEQLTSNVVNALVRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
            +R + RA Q  +K  A    +L +  +DG     +  ++  ++  AC GL+  V ++ +
Sbjct: 132 AKRMEERAQQQAAKPVAETH-QLHVT-EDGQRRPLDMNQVRDLINAACIGLEKHVDAEAI 189

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+YDG+   +L  + I ++R L+EK+P Y+ VTAR L+  +R+EV         
Sbjct: 190 LHETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFGL------ 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    +    Y EYF ++I++G++A LL   +  FDL  L + L  ERD  F YLGLQ L
Sbjct: 244 EVAQADAPAQYLEYFPKFIKKGIEAELLDAKLGQFDLKKLGDALVPERDLQFGYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI  +RIEMPQAF+MRVAMGLAL E  +E+RA+EFYNLLSSF FM STPTLFNS
Sbjct: 304 YDRYFLHIRDTRIEMPQAFYMRVAMGLALNEINREERAIEFYNLLSSFDFMSSTPTLFNS 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT+  QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 364 GTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP +  DLHD  GK FE AY  YE +A RGE+K+F+KI 
Sbjct: 484 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEAAYTGYEAKAARGELKLFKKIQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 544 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+N+ AH  + Q D+ KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+M
Sbjct: 604 LGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ  LH++ IPYAS EAV+ AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ 
Sbjct: 664 GFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGIL 723

Query: 722 PIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           P DS+ LL E R   L  + T  L W  L++R+K  GMRNSNC+AIAPTATI+NI GVS 
Sbjct: 724 PQDSLKLLQEERGGYLEADLTETLDWTPLRERIKQFGMRNSNCVAIAPTATISNIIGVSA 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+  I+RIP D
Sbjct: 784 CIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQD 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           L+ I++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 844 LRDIYSTAFEVEPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           YYLR+  AT  EKST K               +   +     +C          ECE CQ
Sbjct: 904 YYLRTMGATHTEKSTSKTGALNAVDSGAPSSAAQAAAETDGPACMLRPGDAGFEECEACQ 963


>gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
 gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
          Length = 993

 Score = 1032 bits (2669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/992 (55%), Positives = 691/992 (69%), Gaps = 54/992 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P    ++G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGTASQGAPALAPQATFA------DYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   RA           +  L +    G     + K L  +V  AC GL   V+   
Sbjct: 131 REKRHLERAHSDAPVETPDGSSGLTVTDK-GVSRPLDMKALHGLVAAACEGLGSAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPLSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EMQ  Y EYF ++++ GV+A LL + ++ FDLV L   L   RD  F YLGLQ 
Sbjct: 244 EEVAQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDASRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G+RIEMPQAF+MRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVEGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGE+K+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAAQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLAKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  P++S  AVE AD SME + ++A  AS ELA+ERG YSS+ GSL
Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDTAVEFADRSMEAVCYYAYWASTELAEERGRYSSYTGSL 723

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSESLDWTSLRGRISVHGMRNSNCIAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 844 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------------------- 932
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSSGGMGGGSAGGAQGAGSFGAAGGAAP 961

Query: 933 ----SSTHSLGIPSSCTSDT------ECEVCQ 954
               S+         CT         ECE CQ
Sbjct: 962 TGALSAAPIEADGPVCTMRPGDPGFEECEACQ 993


>gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           vietnamiensis G4]
 gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           vietnamiensis G4]
          Length = 996

 Score = 1032 bits (2669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/994 (55%), Positives = 692/994 (69%), Gaps = 55/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R       + A       I ++D+G     +   L  ++  AC GL   V++ 
Sbjct: 131 REKRHLERQHAGEEAAAAGAESNTGINVVDNGVTRPLDMNALRALIVSACDGLGTAVNAD 190

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    +M   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246 -EEVVQADMSARYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + + WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 485 NTANWIPDLFMKRVMEGSDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFKK 544

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605 CNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665 PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+
Sbjct: 725 LWDRGILPQDTLKLLAEARGGYVEVDTSESLDWSTLRSRIAAHGMRNSNCVAIAPTATIS 784

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845 IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 905 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGDVSS 962

Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              +  +          CT         ECE CQ
Sbjct: 963 GGLNAAALAPVEADGPVCTMRPGDPGFDECEACQ 996


>gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 983

 Score = 1032 bits (2668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/986 (54%), Positives = 683/986 (69%), Gaps = 39/986 (3%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           + PS      D+        P      +   Q+I+RNG V  F+P KI+ A+MKAF+AV 
Sbjct: 5   LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G   + S  V++ +  LT+  V  L++        HIED+QD VE SLM+ GHH++ R Y
Sbjct: 65  GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVS 177
           VLYRE R+  RA Q H +   P  P L ++ D+G  +  +  RL  +++ AC+ L QDV 
Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGQDVH 183

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
           +  +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL    
Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQDV 243

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                    +M   Y  YF ++I++GV   LL   ++ +DL  L   L   RD  F+YLG
Sbjct: 244 VPA------DMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLARLGAALDAGRDQQFDYLG 297

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           LQ LYDRYFLH+  +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT
Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  
Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ET
Sbjct: 538 RTLQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597

Query: 598 AVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNLGS+NL+ H  +     + D+ KL  TI TA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLGLM FQ +L+ L IPYAS  AVE AD SME I ++A  AS ELAQERG YSS+ G
Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717

Query: 714 SLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ PID++ LL + R   + ++R + L WD L++++   GMRNSNC+AIAPTATI
Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRATSLDWDALRQKIARDGMRNSNCVAIAPTATI 777

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+ 
Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK---------GVDGKLNAV---------------PV 928
           W+ GLKTTYYLR++SAT VE ST+          G DG + A                  
Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTRQLNAVSSGSDGAMQAAGSGTARPGALDAAAAAA 957

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
               ++  +  +      D  CE CQ
Sbjct: 958 QSQAAALPATDVKFCAIDDPTCEACQ 983


>gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 993

 Score = 1032 bits (2668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/957 (57%), Positives = 694/957 (72%), Gaps = 32/957 (3%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
             ++   ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  
Sbjct: 44  ATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRA 103

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           LL+   +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ     ++  A
Sbjct: 104 LLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVAQESQSA 163

Query: 143 PK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196
            +     +K+  D+G     +   L  ++E AC GL   + +  +++ET KN+YDG+  +
Sbjct: 164 GQATESGIKVT-DNGVEKWLDMAALRTVIEAACEGLGNHIDATPIITETIKNLYDGVPMA 222

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            +  + I +SRTLIEK+P +++VTAR L+  +R+E+L       ++    +MQ  Y  YF
Sbjct: 223 QVYDSAILASRTLIEKDPAFSQVTARILMHVIRKEILG------KEVLQGDMQSEYGTYF 276

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
            +YI EG+ A LL   M +FDL  LA  L   RD  F YLGLQ LYDRYFLHI   RIEM
Sbjct: 277 AKYINEGISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEM 336

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T  PQLSSC+LTTV
Sbjct: 337 PQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTV 396

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAV
Sbjct: 397 EDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAV 456

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +N
Sbjct: 457 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEN 516

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP    DLHD YGK FE AY  YE++ADRGE+K FR+I A  LWRKML MLFET
Sbjct: 517 GDWTLFSPSNTPDLHDKYGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFET 576

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
           GHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++  E AVCNLGS+NL AH   +  
Sbjct: 577 GHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDAN 636

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D++KL  T+RTA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH+  
Sbjct: 637 GKLVLDHEKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQR 696

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPYAS EAV+ AD SME + ++A  AS ELA+ERG YS++ GSLWD+G+ P DS+ LLA+
Sbjct: 697 IPYASEEAVKFADSSMEAVCYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQ 756

Query: 732 VRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   L ++ +S + W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+
Sbjct: 757 ERGGYLEVDNSSTMDWSGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLF 816

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY DG++  I+RIP DL+ ++ATAFE
Sbjct: 817 VKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFE 876

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT 
Sbjct: 877 VEPSWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATH 936

Query: 911 VEKSTLK-------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           VEKST+           G +N    T  +++         CT         ECE CQ
Sbjct: 937 VEKSTVASGQLNSVSSGGGVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993


>gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 979

 Score = 1032 bits (2668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/978 (57%), Positives = 700/978 (71%), Gaps = 35/978 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGV---QVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +     G     P+               ++I+RNG V +F+PSKI+ A+ KAF+AV G 
Sbjct: 10  TGGAAAGVASQAPTTQQTPSAATSNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGG 69

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++I++ LT+  V  L++   S   +HIED+QDQVE SLM+SG H++ R YVL
Sbjct: 70  QGAASARVREIVEQLTDNVVRALVRSRPSGGAIHIEDVQDQVELSLMRSGEHEVARAYVL 129

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDD-GTLISFNSKRLEMIVEEACSGLQD-VSS 178
           YRE+R   RA+ S           + I + D G     +   L  +++ ACSGL D VS+
Sbjct: 130 YREKRKAERASASAQAVARVQEAGISINVTDAGVTKPLDIVALHALIDNACSGLGDAVSA 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + +L ET KN+Y+G+  + +  + I ++RTLIEK+P+Y++VTAR LL  +R+E+L T   
Sbjct: 190 EPILKETLKNLYEGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT--- 246

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              + T  EM   Y EYF ++I  G+ A LL E +  FDL  L   L   RDF F YLGL
Sbjct: 247 ---EVTQAEMATRYAEYFPKFIARGIAAELLDEKLATFDLARLGAALDAGRDFQFNYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTL
Sbjct: 304 QTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT+  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTQRSQLSSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV +NA WTLFSP    DLHD  GK FE AY  YE +A  GE+K+F+
Sbjct: 484 MNTANWIPDLFMKRVMENAEWTLFSPSTCPDLHDKVGKAFEKAYLGYEAKAANGELKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           K+ A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E A
Sbjct: 544 KVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603

Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH A         D+ KL  TIRTA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLAKQADGSYALDHAKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LH+L  PY+S  AV+ AD SME + ++A  AS ELA+ERG Y ++ G
Sbjct: 664 RPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYQASTELAEERGRYETYTG 723

Query: 714 SLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P DS+ LLAE R   L ++ +S + W  L+ R+K  GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDSLKLLAEERGGYLDVDMSSSMDWTSLRARIKQHGMRNSNCIAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+ 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 844 RIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI----------PS 942
           WL GLKTTYYLR+ +AT VEKST+    G LNAV     + S                 +
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--SRGSLNAVSSGSDSGSALDAAAASAPAMPEAEGA 961

Query: 943 SCTSDT------ECEVCQ 954
            CT         ECE CQ
Sbjct: 962 VCTMRPGDPGFEECEACQ 979


>gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp.
           JS666]
 gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 969

 Score = 1032 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/972 (55%), Positives = 698/972 (71%), Gaps = 34/972 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +     G+  +  S A   P  +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   +
Sbjct: 11  TSGGLAGNPVSNDSSAPTNP--LAHYQIIRRNGSVVPFEPNKIAVAMMKAFLAVHGTQGA 68

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S  V++ +  LT+  +  L++        HIED+QDQVE  LM+ GHH+I R YVLYRE
Sbjct: 69  ASASVRETVDGLTQAVIRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRE 128

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVL 182
           +RS  RA Q    + AP AP L +    G  ++ + + L+ ++E +C+ L  DV    ++
Sbjct: 129 KRSQERARQPQ--TPAPEAPMLHVTDG-GQRVALDVRNLQALIEASCANLGADVKPDPIV 185

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L+  +RREVL       ++
Sbjct: 186 AETMRNLYDGVPIDEVYKASILAARTLIEKDPDYTYATARLLMHTIRREVLG------EE 239

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
            +  EM   Y EYF ++I +GV+  LL E +  FDL  L   LK ERD  F+YLGLQ L+
Sbjct: 240 VSQEEMHSRYAEYFPKFIAKGVQNELLDEKLQQFDLARLGAALKPERDLKFDYLGLQTLF 299

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH+   RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+G
Sbjct: 300 DRYFLHVRKQRIELPQAFFMRVAMGLSLGEIDREARAIEFYEILSSFDFMSSTPTLFNAG 359

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR LGAHI GTNG+SQ
Sbjct: 360 TLRSQLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRALGAHIKGTNGESQ 419

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 420 GVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 479

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFM+RV +   WTLFSP +  DLHD +GKEFE  Y  YE +A+RGEIK  RK+ A
Sbjct: 480 NWIPDLFMRRVMEKGTWTLFSPSDTPDLHDKFGKEFEKIYTAYEARAERGEIKPARKLQA 539

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +WRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNL
Sbjct: 540 TDMWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 599

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL+ H  +   D+DKL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MG
Sbjct: 600 GSVNLVQHLKDGAIDHDKLKKTITTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMG 659

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ  L+ L +PYAS EAVE AD+SME + +HA  AS ELA+ERG Y+S+KGSLWD+G+ P
Sbjct: 660 FQDCLYELRVPYASQEAVEFADKSMEAVCYHAYWASTELAKERGKYASYKGSLWDKGILP 719

Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           +D++ +LAE R   + ++R++ L WD L++++   GMRNSNC+AIAPTATI+NI GV   
Sbjct: 720 LDTLDMLAEERGGYVEVDRSATLDWDALRQKIAQDGMRNSNCVAIAPTATISNIIGVDAC 779

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  ++R+P ++
Sbjct: 780 IEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEI 839

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++  W++E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTY
Sbjct: 840 KALYATAFEVETSWIVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTY 899

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIPS 942
           YLR+  AT  EKST+K   GK+N+V      S                   ++ +  I  
Sbjct: 900 YLRTMGATHAEKSTVKA--GKMNSVSSGPEASGSGKSALEVAAAAAQAQMNASPATDIKF 957

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 958 CAIDDPGCEACQ 969


>gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium
           petroleiphilum PM1]
 gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 971

 Score = 1032 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/959 (56%), Positives = 697/959 (72%), Gaps = 32/959 (3%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A P      G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++++  LT
Sbjct: 24  SRAAPGSSAYAGYQIIRRNGAVVAFEPNKIAVALMKAFLAVHGTQGAASASVREMVDGLT 83

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  V  LL+        HIED+QD VE  LM+ GHH+I R YVLYRE R+  RA Q  + 
Sbjct: 84  ESVVRALLRSRPGGGTFHIEDVQDAVELGLMRGGHHEIARAYVLYRERRAQERAKQGAAP 143

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSE 195
               +   L ++   G  +  ++ RL+ +VE AC+ L  +V +  +L+ET +N+YDG+  
Sbjct: 144 VTPAV--ALHVIDR-GQRVPLDTGRLQALVESACANLGSEVQAAPILAETQRNLYDGVPI 200

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            ++  A I ++RTLIEK+P Y + TAR LL  +RRE+L        +  H EMQ  Y +Y
Sbjct: 201 DEVYKAAILAARTLIEKDPAYTRATARLLLHTIRREILGG------EVLHEEMQQRYADY 254

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  +I++GV+A LL E +M +DL  L   LK +RD  F+YLGLQ LYDRYFLH+  +RIE
Sbjct: 255 FPGFIKQGVEAELLDERLMQYDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARIE 314

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGTR  QLSSC+LTT
Sbjct: 315 LPQAFFMRVAMGLALNEVDREARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTT 374

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL GI+ A++ENA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTA
Sbjct: 375 VADDLDGIYEAIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTA 434

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +
Sbjct: 435 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIE 494

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              WTLFSP    DLHD +G  FE AY  YE++ADRGE+K+++++ A  LWRKML+MLFE
Sbjct: 495 GGDWTLFSPSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLFE 554

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H  +  
Sbjct: 555 TGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHGA 614

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+ KL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ +L+ L 
Sbjct: 615 EGLEIDHAKLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQLR 674

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I YAS +AVE AD SME + +HA  AS ELA+ERG YSS+KGSLWD+G+ PIDS+ LLAE
Sbjct: 675 IAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLAE 734

Query: 732 VRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++R++ L WD L+ R++  GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL 
Sbjct: 735 QRGGYVDVDRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLS 794

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P++LK ++ATAFE
Sbjct: 795 VKSNLSGEFTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFE 854

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  AT 
Sbjct: 855 VEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGATH 914

Query: 911 VEKSTLKGVDGKLNAVPVTDP---------------NSSTHSLGIPSSCTSDTECEVCQ 954
            EKST+K   G LNAV                     SS  +  +      D  CE CQ
Sbjct: 915 AEKSTVKA--GHLNAVSSGSGGVDAVAAAAQAQFDAASSVPATDMKFCAIDDPTCEACQ 971


>gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 994

 Score = 1032 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/993 (56%), Positives = 701/993 (70%), Gaps = 52/993 (5%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + + ++  + A  +   P       +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 12  TANPSQFAQSAGGTAVAPGTASGVNLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           YRE R+  R AQ+      P    L +    G     +   L  ++  AC GL + V  +
Sbjct: 132 YRERRAQER-AQAGETQQQPAFIGLNVTDG-GISRPLDMAALRNVIVSACEGLGEAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++IE G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIERGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQPDGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-------VTDPNSSTHSLGIPSS--- 943
           L GLKTTYYLR+  AT VEKST+    G LNAV        V+   +S  +   P+S   
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961

Query: 944 ----------------CTSDT------ECEVCQ 954
                           CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei DM98]
          Length = 942

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/939 (58%), Positives = 689/939 (73%), Gaps = 21/939 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL   VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGNAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
            GLKTTYYLR+ +AT VEKST+    G LNAVP +   S
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTS 941


>gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12D]
 gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 994

 Score = 1030 bits (2664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/993 (56%), Positives = 701/993 (70%), Gaps = 52/993 (5%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + + ++  + A  +   P       +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 12  TANPSQFAQSAGGTAVAPGTASGVNLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE R+  R AQ+      P    L +    G     +   L  ++  AC GL D V  +
Sbjct: 132 YRERRAQER-AQAGETQQQPAFIGLNVTDG-GISRPLDMVALRNVIVSACEGLGDAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-------VTDPNSSTHSLGIPSS--- 943
           L GLKTTYYLR+  AT VEKST+    G LNAV        V+   +S  +   P+S   
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961

Query: 944 ----------------CTSDT------ECEVCQ 954
                           CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|171463020|ref|YP_001797133.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 990

 Score = 1030 bits (2663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/980 (56%), Positives = 703/980 (71%), Gaps = 35/980 (3%)

Query: 1   MHPSKDVNK--GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           M P+  +N+          +      ++   ++I+RNG V +F+PSKI+ A+ KAF+AV 
Sbjct: 20  MSPAGVINQVPSAGFVAGGVGGTQATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVN 79

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G   + S RV++ ++ LT   V  LL+   +    HIEDIQDQVE +LM+SG H + R Y
Sbjct: 80  GGQGAASARVREQVEQLTHSVVRALLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAY 139

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL 173
           VLYRE+R+  RAAQ     +   A +     +K+  D+G     +   L  ++E AC GL
Sbjct: 140 VLYREKRNQERAAQQEVSQEVQTANQAGESGIKVT-DNGVEKWLDMAALRTVMEAACEGL 198

Query: 174 Q-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
              + +  +++ET KN+YDG+  + +  + I +SRTLIEK+P Y++VTAR L+  + +E+
Sbjct: 199 GTHIDASPIVTETIKNLYDGVPMAQVYDSAILASRTLIEKDPAYSQVTARILMHVIHKEI 258

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
           L       ++    +MQ  Y  YF +YI EG+ A LL   M +FDL  LA  L   RD  
Sbjct: 259 LG------KEVLQGDMQAEYSTYFAKYINEGISAELLDPRMREFDLPRLAAALNASRDLQ 312

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F YLGLQ LYDRYFLHI   RIEMPQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM
Sbjct: 313 FNYLGLQTLYDRYFLHIEDRRIEMPQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFM 372

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STPTLFNS T  PQLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+
Sbjct: 373 SSTPTLFNSATTRPQLSSCYLTTVEDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGS 432

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDD
Sbjct: 433 HIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDD 492

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           RRRTHDM+T+NWIPDLFMKRV +N  WTLFSP    DLH  +GK FE AY  YE++ADRG
Sbjct: 493 RRRTHDMSTSNWIPDLFMKRVMENGEWTLFSPSNTPDLHGKFGKAFEEAYVAYEQKADRG 552

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+K FR+I A  LWRKML MLFETGHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN+
Sbjct: 553 ELKPFRRIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNT 612

Query: 593 SSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           + +E AVCNLGS+NL AH   +       D++KL  T+RTA+R+LDNVIDIN + + KA+
Sbjct: 613 NEDEIAVCNLGSVNLTAHMTTDANGKMILDHEKLQRTVRTAMRMLDNVIDINYYAVAKAR 672

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            SN  HR +G+G+MGFQ  LH+  IPYAS EAV+ AD SME + ++A  AS ELA+ERG 
Sbjct: 673 NSNLKHRPVGMGIMGFQDCLHMQRIPYASDEAVKFADSSMEAVCYYAYQASNELAEERGV 732

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           YS++KGSLWD+G+ P DS+ LLA  R   L ++ +S + W+ L+ R+K  GMRNSNC+AI
Sbjct: 733 YSTYKGSLWDRGILPQDSVALLAAERGGYLEVDSSSTMDWNGLRARIKQYGMRNSNCVAI 792

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATI+NI GVS  I+P++QNL+VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY
Sbjct: 793 APTATISNIIGVSACIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKY 852

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            DG++  I+RIP DL+ ++ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD
Sbjct: 853 FDGTLSKIDRIPQDLRDLYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLD 912

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------TDPNSSTHSLGI 940
             Y+ AWL GLKTTYYLR+ +AT VEKST+    G+LNAV        TD  ++      
Sbjct: 913 DTYKLAWLRGLKTTYYLRTMAATHVEKSTV--ASGQLNAVSSGGGVNGTDAAAAGGVEAD 970

Query: 941 PSSCTSDT------ECEVCQ 954
              CT         ECE CQ
Sbjct: 971 GPVCTMRPGDAGFEECEACQ 990


>gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 967

 Score = 1030 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/970 (55%), Positives = 699/970 (72%), Gaps = 32/970 (3%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
            ++ G   +    A P    +   Q+I+RNG V +F+PSKI+ A+MKAF+AV G   + S
Sbjct: 9   PLSSGVPASNSIHATPASGALANYQIIRRNGSVVAFEPSKIAVAMMKAFLAVHGTQGAAS 68

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             V++ +  LT+  V  L++   S    HIED+QDQVE  LM+ GHH+I R YVLYRE+ 
Sbjct: 69  ASVRETVDTLTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKH 128

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSE 184
           +  RA Q    +  P  P+L +M   G  ++ + + L+ ++E +C+ L  DV    ++SE
Sbjct: 129 NQERARQLQ--AQTPALPQLHVMDG-GKRVALDLRNLQALIEASCANLGTDVKPDPIVSE 185

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  +R+EVL       ++ +
Sbjct: 186 TMRNLYDGVPIEEVYKASILAARTLIEKDPDYTYATARLLLHTIRKEVLD------EEIS 239

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           H  M   Y  YF  +I +G+K  LL E +  FDL  L   LK ERD  F+YLGLQ L+DR
Sbjct: 240 HEAMAVRYVTYFPEFIAKGIKNELLDEKLQQFDLARLGAALKPERDLQFDYLGLQTLFDR 299

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLHI   RIE+PQAFFMRVAMGL+L ET++E RA+EFY +LSSF FM STPTLFN+GT 
Sbjct: 300 YFLHIRKQRIELPQAFFMRVAMGLSLNETDREARAIEFYEILSSFDFMSSTPTLFNAGTL 359

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR +GAHI GTNG+SQGV
Sbjct: 360 RSQLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRAMGAHIKGTNGESQGV 419

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NW
Sbjct: 420 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNW 479

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFM+RV +   WTLFSP +  DLHD +G++FE AY  YE +A+RGE+K  RK+ A  
Sbjct: 480 IPDLFMRRVMEKGSWTLFSPSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATD 539

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +WRKML+MLFETGHPWITFKD CNIRSPQQH GVVHSSNLCTEITLN+S+ ETAVCNLGS
Sbjct: 540 MWRKMLSMLFETGHPWITFKDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGS 599

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL+ H  +   D+DKL  TI TA+R+LDNVIDIN + +EKA+ SN  HR +GLGLMGFQ
Sbjct: 600 INLVQHLKDGALDHDKLKKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQ 659

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L+ L +PYAS  AVE AD SME I +HA  AS ELA+ERG Y S+KGSLWDQG+ P+D
Sbjct: 660 DCLYELRVPYASQAAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLD 719

Query: 725 SIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           ++ +LA+ R   + ++R++ L WD L++++ T GMRNSNC+AIAPTATI+NI GV   I+
Sbjct: 720 TLDMLAKERGGYVEVDRSATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIE 779

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P+D+K 
Sbjct: 780 PCFGNLSVKSNLSGEFTVINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKA 839

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++ATAFEI+  WL+E+ SRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYL
Sbjct: 840 LYATAFEIETSWLVEAGSRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYL 899

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------------SSTHSLGIPSSC 944
           R++SAT  EKST++   GK+N+V                         S+T +  I    
Sbjct: 900 RTQSATHAEKSTVQA--GKMNSVSSAPAAAMLGMSAIDKAAAAAQAQMSATPATDIKFCA 957

Query: 945 TSDTECEVCQ 954
             D  CE CQ
Sbjct: 958 IDDPGCEACQ 967


>gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           citrulli AAC00-1]
 gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           citrulli AAC00-1]
          Length = 983

 Score = 1030 bits (2662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/988 (54%), Positives = 683/988 (69%), Gaps = 43/988 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           + PS      D+        P      +   Q+I+RNG V  F+P KI+ A+MKAF+AV 
Sbjct: 5   LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G   + S  V++ +  LT+  V  L++        HIED+QD VE SLM+ GHH++ R Y
Sbjct: 65  GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVS 177
           VLYRE R+  RA Q H +   P  P L ++ D+G  +  +  RL  +++ AC+ L  DV 
Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGADVH 183

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
           +  +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL    
Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQDV 243

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                    +M   Y  YF ++I++GV   LL   ++ +DLV L   L   RD  F+YLG
Sbjct: 244 VPA------DMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLVRLGAALDAGRDQQFDYLG 297

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           LQ LYDRYFLH+  +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT
Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  
Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ET
Sbjct: 538 RTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597

Query: 598 AVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNLGS+NL+ H  +     + D+ KL  TI TA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLGLM FQ +L+ L IPYAS  AVE AD SME I ++A  AS ELAQERG YSS+ G
Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717

Query: 714 SLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ PID++ LL + R   + ++R + L WD L++++   GMRNSNC+AIAPTATI
Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRAATLDWDALRQKIARDGMRNSNCVAIAPTATI 777

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+ 
Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937
           W+ GLKTTYYLR++SAT VE ST+     +LNAV     ++   +               
Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGSDSAMQAAGTGAARPSALDAAAA 955

Query: 938 -----------LGIPSSCTSDTECEVCQ 954
                        +      D  CE CQ
Sbjct: 956 AAQSQAAALPATDVKFCAIDDPTCEACQ 983


>gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei NCTC 13177]
          Length = 956

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/935 (58%), Positives = 689/935 (73%), Gaps = 21/935 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRTLDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            GLKTTYYLR+ +AT VEKST+    G LNAVP +
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           glumae BGR1]
 gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           glumae BGR1]
          Length = 999

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/934 (58%), Positives = 685/934 (73%), Gaps = 22/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P    ++G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGTASQGAPALAPQATFA------DYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   RA           A  + +    G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERAHSDAPADAPAGAAGINVTDA-GVTRPLDMGALRGLIASACEGLGSAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +  EMQ  Y EYF ++++ GV+A LL + ++ FDLV L   L   RD  F YLGLQ 
Sbjct: 244 EEVSQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDAGRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFY++LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYHVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGE+K+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  P++S  AVE AD SME + ++A  AS EL++ERG YSS++GSL
Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDAAVEFADRSMEAVCYYAYWASTELSEERGRYSSYRGSL 723

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +S L W  L++R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSSSLDWTSLRERISLHGMRNSNCIAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 844 DRIPSDLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            GLKTTYYLR+ +AT VEKST+    G LNAVP 
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPS 935


>gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis EO147]
          Length = 953

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/934 (58%), Positives = 685/934 (73%), Gaps = 21/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +      A     + D+G     +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVTDNGVTRPLDMSALHALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++SET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            GLKTTYYLR+ +AT VEKST+    G LNAVP 
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 936


>gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 968

 Score = 1029 bits (2660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/967 (55%), Positives = 686/967 (70%), Gaps = 36/967 (3%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS++   P+    ++VIKR G V  FD  KI+ A+ KAF+AVEG  A+ S RV+D ++  
Sbjct: 10  PSVSVTAPQT---LRVIKRTGDVVPFDSGKIAVALSKAFIAVEGDNAATSSRVRDFVQRA 66

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +E      L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  RA     
Sbjct: 67  SENIEQAFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARARAESGAD 126

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            +     P L +   DG+    +  R+E +V +AC  L +V    ++ ++ KN+YDG++ 
Sbjct: 127 IT--KPHPTLNVTAPDGSTRPLDLGRVETLVFDACENLANVEPGKIVEDSLKNLYDGVTV 184

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             +  AL+ ++RTL+EK+PNY  VTAR L + LRRE L+ +    ++AT+ EM   Y   
Sbjct: 185 DGVSQALMMTARTLVEKDPNYTYVTARLLQDNLRREALSFL-GIAEEATYQEMADYYKPA 243

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  YI +G++   L   + +FDL  L + L + RD  F YLGLQ LYDRYF+H +  R E
Sbjct: 244 FQAYIAKGIEFEQLDPRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYE 303

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FMRVAMGLAL E ++E RA+EFY LLSSF +M STPTLFNSGT   QLSSC+LTT
Sbjct: 304 LPQVMFMRVAMGLALNEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTT 363

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL  I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTA
Sbjct: 364 VPDDLDNIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTA 423

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV  
Sbjct: 424 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFD 483

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSP    DLHDLYG  FE  Y+ YE     G++K+F+++ A  LWR+ML+MLFE
Sbjct: 484 DGEWTLFSPATCPDLHDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFE 543

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + Q
Sbjct: 544 TGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQ 603

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD DKL  T++TAVR+LDNVIDIN + + +A++SN  HR +GLG+MGFQ AL+   I YA
Sbjct: 604 FDGDKLKKTVKTAVRMLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYA 663

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV  AD SME +S+HAI AS +LA ERG Y S++GSLW QG+ PIDSI  L + R E
Sbjct: 664 SDEAVAFADTSMELVSYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGE 723

Query: 736 --LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++ ++   WD +++++   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKS
Sbjct: 724 KYIEVDTSTTQDWDRIREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKS 783

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTVVN+++VN+LK+R LWDE MI+DLKY+DGS+  I+R+P+DLK  +ATAFE +P
Sbjct: 784 NLSGEFTVVNAYMVNDLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEP 843

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+A+RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  ATSVEK
Sbjct: 844 KWLVEAAARRQKWIDQAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEK 903

Query: 914 STLKGVDGKLNAVPVTD-------------------------PNSSTHSLGIPSSCTSDT 948
           ST+    G LNAV                                S      PS+   D 
Sbjct: 904 STVD--RGNLNAVSNASPSTAPAPAPEATPQAQEPRGVDDFLKGKSGSGSRAPSAGEIDE 961

Query: 949 -ECEVCQ 954
             CE CQ
Sbjct: 962 LGCEACQ 968


>gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia AU 1054]
 gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia HI2424]
 gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia MC0-3]
 gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia AU 1054]
 gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia HI2424]
 gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia MC0-3]
          Length = 1001

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/999 (55%), Positives = 689/999 (68%), Gaps = 60/999 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17   RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71   GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122  REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
            RE+R   R       + A       I ++D+G     +   L  ++  AC GL   V+  
Sbjct: 131  REKRHLERQHAGEEAAAAGGESATGINVVDNGVTRPLDQNALRALIVSACDGLGAAVNPD 190

Query: 180  IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191  PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240  PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246  -EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300  ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
             LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305  TLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360  NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
            NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365  NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420  KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425  KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480  NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
            NTANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 485  NTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFKK 544

Query: 540  ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
            I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545  IPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600  CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605  CNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +G+G+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665  PVGMGIMGFQDCLHLLRTPYASQEAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRGS 724

Query: 715  LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 725  LWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIATHGMRNSNCVAIAPTATIS 784

Query: 774  NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785  NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834  IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845  IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894  LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------------- 937
            L GLKTTYYLR+ +AT VEKST+    G LNAVP     S   S                
Sbjct: 905  LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSSSGGAQGAAGGFGAAGG 962

Query: 938  ----------------LGIPSSCTSDT------ECEVCQ 954
                                  CT         ECE CQ
Sbjct: 963  AASSGAVNAAAALAPVEADGPVCTMRPGDPGFDECEACQ 1001


>gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei BCC215]
          Length = 952

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/933 (58%), Positives = 688/933 (73%), Gaps = 21/933 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + +HA  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYHAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12J]
 gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12J]
          Length = 994

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/993 (56%), Positives = 697/993 (70%), Gaps = 52/993 (5%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           + + ++  + A  +   P       +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 12  TANPSQFAQSAGGTAVAPGTASGVNLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           YRE R+  R AQ+      P    L +    G     +   L  ++  AC GL + V  +
Sbjct: 132 YRERRAQER-AQAGETQQQPAFIGLNVTDG-GITRPLDMAALRNVIVSACEGLGEAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHISETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASDAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P+WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPLWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI------------- 940
           L GLKTTYYLR+  AT VEKST+    G LNAV          + G              
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDIGGVSAAGASGVTSAAPASALD 961

Query: 941 -------------PSSCTSDT------ECEVCQ 954
                         + CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis Bt4]
          Length = 953

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/934 (58%), Positives = 695/934 (74%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P+LA          +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGA----PALASQA--TYADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis TXDOH]
          Length = 950

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/934 (58%), Positives = 695/934 (74%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P+LA          +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGA----PALASQA--TYADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  P+AS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPFASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans A8]
 gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter
           xylosoxidans A8]
          Length = 976

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/975 (54%), Positives = 689/975 (70%), Gaps = 41/975 (4%)

Query: 12  EDAFPSLAYPFPEKI-----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
             A P      P            +I+RNG V  F+P+KI+ A+ KAF+AV G   + S 
Sbjct: 11  PTAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPNKIAIAMTKAFLAVNGGQGAASA 70

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           RV+++++NLT Q V  L+++  +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+
Sbjct: 71  RVRELVENLTGQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRT 130

Query: 127 DVRAAQ-----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
             RAA      +  K+ AP    L +    G     +   L   +E A  GL + + ++ 
Sbjct: 131 QERAAAAAAADTQEKAAAPQEHVLNVTDA-GVRRPLDLAELRATIEAAGEGLAEFIDTEA 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EVL       
Sbjct: 190 ILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +   M   Y EYF  +I  G++  LL   +  +DL  L + L  +RD  F YLGLQ 
Sbjct: 244 EEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGHALNAKRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+
Sbjct: 364 SGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP +  DLHD YG+ FE AY  YE +   GE+K+F+K+
Sbjct: 484 TANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYVGYEARVASGELKLFKKM 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVC
Sbjct: 544 PALNLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVC 603

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH         + D+DK+  T+  A+R+LDNVIDIN + ++KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG Y S++GSL
Sbjct: 664 VGMGIMGFQDCLQMMRVPYASQSAVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSL 723

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+N
Sbjct: 724 WSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKKHGMRNSNCIAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I
Sbjct: 784 IIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P +L+ ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW 
Sbjct: 844 DRVPSELRDLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWK 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---------SSCT 945
            GLKTTYYLR+  ATS EKST +G  G+LNAV     ++S      P         + CT
Sbjct: 904 RGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGQSTSAAVAAAPVLPEPEVLGAVCT 961

Query: 946 SDT------ECEVCQ 954
                    ECE CQ
Sbjct: 962 MRPGDPGFEECEACQ 976


>gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia J2315]
 gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315]
          Length = 1003

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/1000 (55%), Positives = 689/1000 (68%), Gaps = 62/1000 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 19   RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 72

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 73   GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132

Query: 122  REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
            RE+R   R       + A       I ++D+G     +   L  ++  AC GL   V+  
Sbjct: 133  REKRHLERQHAGEEAAAAGGESTTGINVVDNGVTRPLDLNALRALIVSACDGLGAAVNPD 192

Query: 180  IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 193  PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 247

Query: 240  PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 248  -EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 306

Query: 300  ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
             LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 307  TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 366

Query: 360  NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
            NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 367  NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 426

Query: 420  KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 427  KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 486

Query: 480  NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
            NTANWIPDLFMKRV + A WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 487  NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFKK 546

Query: 540  ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
            I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 547  IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 606

Query: 600  CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 607  CNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 666

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 667  PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 726

Query: 715  LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            LWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+
Sbjct: 727  LWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATIS 786

Query: 774  NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 787  NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 846

Query: 834  IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 847  IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 906

Query: 894  LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------- 928
            L GLKTTYYLR+ +AT VEKST+    G LNAVP                          
Sbjct: 907  LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAGG 964

Query: 929  --------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                      P  +      P  CT         ECE CQ
Sbjct: 965  DASSGAINAAPALAPVEADGP-VCTMRPGDPGFDECEACQ 1003


>gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 997

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/995 (55%), Positives = 691/995 (69%), Gaps = 56/995 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P      G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEHGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTRNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           RE+R   R       + A       I ++D+G     +   L  ++  AC GL   V+ +
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASSGINVVDNGVTRPLDLNALRALIVSACDGLGAAVNPE 190

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    EM   Y EYF +++  GV+A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246 -EEVVQSEMSTRYAEYFPQFLRRGVEAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 364

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 485 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLFKK 544

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605 CNLGSVNLVAHLVKQPDGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665 PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 725 LWDRGILPQDTLKLLAEARGGYVEVDMSETLDWAALRARIATHGMRNSNCVAIAPTATIS 784

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 904

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------------- 937
           L G KTTYYLR+ +AT VEKST+    G LNAVP    +SS  +                
Sbjct: 905 LRGKKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGGSSSGGAQGAAGGFGAAGGEASS 962

Query: 938 ------------LGIPSSCTSDT------ECEVCQ 954
                             CT         ECE CQ
Sbjct: 963 GALNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 997


>gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
 gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
          Length = 954

 Score = 1028 bits (2658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/931 (58%), Positives = 693/931 (74%), Gaps = 15/931 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RNG V +F+P KIS A+ KAF+AV+G   + S+RV++++ NLT+  V  LL+    
Sbjct: 33  RVIRRNGAVVTFEPGKISVALTKAFIAVDGGQGAASVRVREVVVNLTQDVVNALLRRQPD 92

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           +   HIEDIQDQVE +LM+SG H + R YVLYREER+  RA      +    A  L +M 
Sbjct: 93  SGTFHIEDIQDQVELALMRSGEHDVARAYVLYREERTRERARLKQKSTAETAAEVLYVM- 151

Query: 150 DDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D+G  +  +  +L  ++E +C+GL   V   ++L  T K++YDG+   ++  +LI S+R 
Sbjct: 152 DNGQRVPLDVAKLSALIETSCAGLGNAVDPALILKATLKDLYDGVPIDEVRKSLILSARV 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           LIEK+P Y+ VTAR LL+ +R EVL        + +   M+  Y EYF  +I+ G++A L
Sbjct: 212 LIEKDPAYSYVTARLLLDNVRYEVLGA------EVSQQAMKSHYQEYFPAFIKRGIEADL 265

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L + +  FDL  L+  L  +RD  F+YLGLQ LYDRYFLHI   RIE+PQAFFMRVAMGL
Sbjct: 266 LDQRLAQFDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQRIELPQAFFMRVAMGL 325

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++
Sbjct: 326 ALNEIDREARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVPDDLDGIYESIK 385

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ENA+LAKY+GGLGNDWT VR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGGKRKGAV
Sbjct: 386 ENALLAKYAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGGKRKGAV 445

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH+D+EEFL+LRKNTGDDRRRTHDMNTA WIPDLFMKRV +   WTLFSP +V 
Sbjct: 446 CAYLECWHLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRVMEGGDWTLFSPSDVP 505

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLH+ +G++FE AY  YE + +RGE+++++KI AV LWRKML+MLFETGHPWITFKDPCN
Sbjct: 506 DLHEKFGQQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSMLFETGHPWITFKDPCN 565

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL+AH  +   D DKL  TI   
Sbjct: 566 VRSPQNHIGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKDGALDLDKLKRTIHVV 625

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L IPY SP AVE AD SME
Sbjct: 626 MRMLDNVIDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIPYGSPAAVEFADRSME 685

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWD 747
            +++ A  AS ELAQERG YS++KGSLWD+G+ P D++ +L + R   +  + ++ L WD
Sbjct: 686 AVAYQAYWASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQERGGYVEADLSATLDWD 745

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++R+K  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FT+ N  LV
Sbjct: 746 ALRQRIKLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVKSNLSGEFTITNRSLV 805

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK+ +LWDE MISDLKY DG+I  I+RIPD+++ ++ATAFE+DP+WLIE+ +RRQKWI
Sbjct: 806 NDLKKLNLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMDPLWLIEAGARRQKWI 865

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLRS  AT+ EKST++   G LNAVP
Sbjct: 866 DQSQSLNIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAEKSTVRA--GSLNAVP 923

Query: 928 ----VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               +        ++ I      D  CE CQ
Sbjct: 924 ADGGIVKAAVEVSTVEIKYCAIDDESCESCQ 954


>gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha H16]
 gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia
           eutropha H16]
          Length = 977

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/968 (57%), Positives = 700/968 (72%), Gaps = 32/968 (3%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
              A  + A          ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++
Sbjct: 18  APTAQQTPANAANTNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQGAASARVRE 77

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           I++ LT+  V  L++   +   +HIED+QD VE +LM+SG H++ R YVLYRE+R D RA
Sbjct: 78  IVEQLTDNVVRALVRSRPNGGAIHIEDVQDHVELALMRSGEHEVARAYVLYREKRKDERA 137

Query: 131 AQSHSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKN 188
             +           + + + DG      +   L  +++ ACSGL   VS++ +L ET KN
Sbjct: 138 QANAQAVARVQEGGISVNVTDGGVTHVLDIAALHDLIDNACSGLGNAVSAEPILKETLKN 197

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+  + +  + I ++RTLIEK+P+Y++VTAR LL  +R+E+L T      + T  EM
Sbjct: 198 LYDGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT------EVTQAEM 251

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y EYF ++I  G++A LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLH
Sbjct: 252 STRYAEYFPKFIARGIEAELLDEQLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLH 311

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           I+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QL
Sbjct: 312 IDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQL 371

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFL
Sbjct: 372 SSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFL 431

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 432 KVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDL 491

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +   WTLFSP    DLHD  GKEFE AY  YE +A  GE+K+F+K+ A+ LWRK
Sbjct: 492 FMKRVMEGGEWTLFSPATCPDLHDKVGKEFEKAYLGYEAKAASGELKLFKKLPALQLWRK 551

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+
Sbjct: 552 MLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLV 611

Query: 609 AHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           AH A         D+ KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGF
Sbjct: 612 AHMAKQADGTYALDHAKLQKTVRTAMRMLDNVIDINYYAVDKARNSNLRHRPVGMGIMGF 671

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q  LH+L  PY+S  AV+ AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ P 
Sbjct: 672 QDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYHASTELAEERGRYSSYEGSLWDRGILPQ 731

Query: 724 DSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS+ LLAE R   L ++ ++ + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I
Sbjct: 732 DSLKLLAEERGGYLDVDMSATMDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACI 791

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+
Sbjct: 792 EPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLR 851

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYY
Sbjct: 852 DIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKTTYY 911

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI----------PSSCTSDT---- 948
           LR+ +AT VEKST+    G LNAV     + S                 + CT       
Sbjct: 912 LRTMAATHVEKSTV--SRGSLNAVSSGSDSGSALDAAAASAPAMPEAEGAVCTMRPGDPG 969

Query: 949 --ECEVCQ 954
             ECE CQ
Sbjct: 970 FEECEACQ 977


>gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 112]
          Length = 953

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/933 (58%), Positives = 688/933 (73%), Gaps = 21/933 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 14]
 gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 91]
 gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei B7210]
          Length = 954

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/933 (58%), Positives = 688/933 (73%), Gaps = 21/933 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     +++          + D+G   + +   L  ++  AC GL D VS + 
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVSPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
 gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
          Length = 973

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/977 (55%), Positives = 696/977 (71%), Gaps = 35/977 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKI-KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           P            P+ A    +K      +I+RNG V  F+P KI+ A+ KAF+AV G  
Sbjct: 7   PESGTAALRHPTTPAPAENSSDKPWNNFHIIRRNGVVVGFEPGKIAIAMTKAFLAVNGGQ 66

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V  L+++  S    HIE+IQDQVE +LM+SG H + R YVLY
Sbjct: 67  GAASARVRELVETLTAQVVNALVRNRPSGGTFHIEEIQDQVELTLMRSGEHDVARAYVLY 126

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKI 180
           RE+RS  R AQS     A     + +  D+G     +  RL   + EA   L  ++ ++ 
Sbjct: 127 REKRSQER-AQSTPAPAATDQTIIHVT-DNGVQCPLDLARLRATITEAGLNLPHNIDAEA 184

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+YDG+   ++  + I S+R ++E +P+Y++VTAR LL  +R+EVL       
Sbjct: 185 ILKETVKNIYDGIPVDEVFKSAILSARAMVENDPSYSQVTARLLLHTIRKEVLG------ 238

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +  +M   Y EYF ++++ G++  LL E +  FDL  LA  LK ERD  F YLGLQ 
Sbjct: 239 EEVSQSDMATRYAEYFPQFLKAGIEGGLLDEKLAQFDLPKLAAALKAERDLQFNYLGLQT 298

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G RIE+PQ FFMRVAMGLAL E  +E+RA+EFY +LSSF FM STPTLFN
Sbjct: 299 LYDRYFLHLRGRRIELPQVFFMRVAMGLALNEINREERAIEFYEILSSFDFMSSTPTLFN 358

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+
Sbjct: 359 SGTLHSQLSSCYLTTVSDDLAGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 418

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGD+RRRTHDMN
Sbjct: 419 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDERRRTHDMN 478

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +N  WTLFSP +  DLHD YGK+FE AY  YE +  RGE+ +F+K+
Sbjct: 479 TANWIPDLFMKRVMENGEWTLFSPSDAPDLHDKYGKDFEEAYLGYEDKVARGELPLFKKV 538

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVC
Sbjct: 539 PANMLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVC 598

Query: 601 NLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL AH   +       D++KL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 599 NLGSVNLAAHLKQDANGQYVLDHEKLERTIGIAMRMLDNVIDINYYAVPKARNSNVRHRP 658

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LH++ +P+AS +AVE +D SME   ++A  AS +LA ERG Y+SFKGSL
Sbjct: 659 VGMGVMGFQDCLHMMRVPFASDDAVEFSDRSMEAACYYAYWASSKLAAERGHYASFKGSL 718

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +S L WD L+  +K  GMRNSNC+AIAPTATI+N
Sbjct: 719 WDRGILPQDTLALLREERGGYVEVDDSSTLDWDSLRAHIKQHGMRNSNCVAIAPTATISN 778

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P+Y+NLYVKSN+SG+FTVVN +LV +LK+R LWDE M+SDLKY DGS+  I
Sbjct: 779 IIGVSPCIEPNYRNLYVKSNLSGEFTVVNDYLVRDLKERKLWDEVMVSDLKYFDGSLARI 838

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+K++ATAFE+DP W++E A+RR KWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 839 DRIPADLRKLYATAFEVDPTWVVECAARRSKWIDQAQSLNIFMAGVSGKKLDDIYKLAWV 898

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-----------THSLGIPSS 943
            GLKTTYYLRS  AT+ EKST +G  G+LNAV     +               +  + + 
Sbjct: 899 RGLKTTYYLRSIGATNAEKSTGRG--GELNAVASGSTSPVAAAAAPAVAALPEAEVLGAV 956

Query: 944 CTSDT------ECEVCQ 954
           CT         ECE CQ
Sbjct: 957 CTMRPGDEGFEECEACQ 973


>gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 955

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/938 (57%), Positives = 710/938 (75%), Gaps = 8/938 (0%)

Query: 21  PFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
           P P    G ++VIKRNG V S+D  KI+ AI KAF+AVEG  A+ S R+ + +  L    
Sbjct: 22  PKPAIAPGQMRVIKRNGSVVSYDAEKIAIAITKAFLAVEGGAAAASTRIHNEVNQLANSV 81

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
            T   +   S   +HIE+IQDQVE  LM+SG  K+ R YVLYREER  +R  +   K + 
Sbjct: 82  TTTFTRRMPSGGTLHIEEIQDQVELELMRSGEQKVARTYVLYREERKQLRQKEEPQKEEK 141

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
                +++ +++G   + + K LE++V EAC GL+  +++ ++ E  KN+YDG++E D  
Sbjct: 142 E---GIRVTLENGDEDTQDIKHLEIMVTEACEGLEGTNAQQIIDEANKNLYDGVTEEDAR 198

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           T+L+ +SRTL+E+EPNY  VTAR LL+ +R E LT + +  ++AT  EM+ LYP+    +
Sbjct: 199 TSLVMTSRTLVEQEPNYTYVTARILLDNIRTEALTYL-ELQKQATQQEMKVLYPQALRSF 257

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           + +GV+  +L+  +++ D+  L   +   RD  F YLGLQ LYDRYF+H    R E+PQ 
Sbjct: 258 LAKGVENEILNPELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYDRYFIHDTEIRYELPQV 317

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           FFMRV+MGLAL+E ++E++A+EFYNLLSSF +M STPTLFNSGT+H QLSSC+LTTVPDD
Sbjct: 318 FFMRVSMGLALREEKREEKAIEFYNLLSSFDYMSSTPTLFNSGTKHSQLSSCYLTTVPDD 377

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L+GI+GA+Q+NAML+K++GGLGNDWTPVRGLG+ I GTNGKSQGV+PFLKV NDTAVAVN
Sbjct: 378 LHGIYGAIQDNAMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQGVVPFLKVVNDTAVAVN 437

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLF+KRV+++  W
Sbjct: 438 QGGKRKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKW 497

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF+P +  DLHDLYG EFE  YE YE Q   GEI+ F+++ A  LW+KML+M+FETGHP
Sbjct: 498 TLFTPSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAKDLWKKMLSMVFETGHP 557

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           WITFKD CN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGS+NL  H  + + D +
Sbjct: 558 WITFKDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLTHHIKDGKMDEE 617

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI TA+R+LDNVIDIN + ++ A+ SN  HR IGLG+MGF  AL++L  PYAS EA
Sbjct: 618 KLEKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGFHDALYMLETPYASQEA 677

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LA 737
           V+ AD+SME +S++AI AS +LA+ERGAY S++GSLW QG+ PIDSI LL E R E  L 
Sbjct: 678 VDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPIDSIKLLKESRGEDYLE 737

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           M+ +S + WD L++ V+  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG
Sbjct: 738 MDESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG 797

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTV N  +V  LK+  LWD  MI+DLKY+DGS+  I RIP+++K+++ATAF+I+P WLI
Sbjct: 798 EFTVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLI 857

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           ++ASRRQKWIDQ+QSLNLY+DEP+GKKLD +YR AWL GLKTTYYLRSRSAT+ EKST+ 
Sbjct: 858 DAASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTYYLRSRSATTAEKSTIS 917

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
             +    +          ++   PS+C+  D +C+ CQ
Sbjct: 918 TGELNAVSATAQPEVQPQNNTTAPSACSILDPDCDACQ 955


>gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
 gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
          Length = 988

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/983 (53%), Positives = 688/983 (69%), Gaps = 42/983 (4%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +  + +G      + A      +   Q+I+RNG V  F+PSKI+ A+MKAF+AV G   +
Sbjct: 16  TTTLPQGASMTHGA-ALGANSALAHYQIIRRNGAVVPFEPSKIAVALMKAFLAVHGAQGA 74

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S  V++ +  LT+  V  L +        HIED+QDQVE  LM+ GHH++ R YVLYR 
Sbjct: 75  ASASVRETVDGLTQAVVRALTRSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRA 134

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVL 182
           +R++ RA  +     AP  P L +  D+G  ++ +  RL+ ++E AC+ L  DV +  ++
Sbjct: 135 KRAEERAQHAAQA--APQTPVLHVT-DNGQRVALDLNRLQRLIESACANLSADVKADPIV 191

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L   + +EVL    +    
Sbjct: 192 AETLRNLYDGVPLEEVYKAAILAARTLIEKDPDYTYATARLLFHTIAKEVLGRDVQP--- 248

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
               EM+  Y +YF  +I++GV A LL+  ++ +DL  L   LK ERD  F+YLGLQ LY
Sbjct: 249 ---SEMKQAYADYFPGFIKKGVDAELLNPELLQYDLKRLGAALKSERDQQFDYLGLQTLY 305

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH+  +RIE+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSG
Sbjct: 306 DRYFLHVKKTRIELPQAFFMRVAMGLALNEIDREARAIEFYEVLSSFDFMSSTPTLFNSG 365

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQ
Sbjct: 366 TLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQ 425

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 426 GVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 485

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFM+RV +   WTLFSP +  DLHDL+G  FE AY  YE +A RGE+K  + + A
Sbjct: 486 NWIPDLFMRRVMEKGEWTLFSPSDAPDLHDLFGSAFEKAYVAYEAKAKRGELKPSKTVPA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
           + LWRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNL
Sbjct: 546 IDLWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 605

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H  + + D++KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+M 
Sbjct: 606 GSVNLKQHITDGKLDHEKLKKTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMA 665

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+ + IPYAS  AV+ ADESME I ++A  AS ELA+ERG YSS++GSLW +G+ P
Sbjct: 666 FQDALYEMRIPYASDAAVQFADESMEAICYYAYWASTELARERGVYSSYQGSLWSKGILP 725

Query: 723 IDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D++ LLA  R   + ++R++ L W+ L+K++   GMRNSNC+AIAPTATI+NI GV  S
Sbjct: 726 PDTLELLARERGGYVEVDRSATLDWELLRKKIAADGMRNSNCVAIAPTATISNIIGVDAS 785

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P + NL VKSN+SG+FT++N +LV +LK+  LWDE M+ DLK+ DGS+  I+R+P D+
Sbjct: 786 IEPCFGNLSVKSNLSGEFTIINGYLVKDLKRLGLWDEVMVMDLKHFDGSLLPIDRVPQDI 845

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTY
Sbjct: 846 KALYATAFEVEPSWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTY 905

Query: 902 YLRSRSATSVEKSTLKG-----------VDGKLNAVPVTDPNSSTHSLG----------- 939
           YLR+ SAT  EKST+               G     PVT   +S   +            
Sbjct: 906 YLRTTSATQAEKSTVAAGRLNAVSSGSSETGAAAMAPVTSKPASAKKVSALEAAAAAAQT 965

Query: 940 --------IPSSCTSDTECEVCQ 954
                   I      D  CE CQ
Sbjct: 966 QMAVAATDIKFCAIDDPGCEACQ 988


>gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix
           cholodnii SP-6]
 gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix
           cholodnii SP-6]
          Length = 958

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/947 (57%), Positives = 689/947 (72%), Gaps = 22/947 (2%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           A        G Q+I+RNG V +F+P KI+ A+MKAF+AV G   + S  V++ +  LTE 
Sbjct: 23  AAANASAYVGYQIIRRNGAVVAFEPHKITVALMKAFLAVHGTHGAASASVRETVDGLTEA 82

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V  L++   S    HIEDIQDQVE  LM+ GHH + R YVLYRE R+  RA+Q  +   
Sbjct: 83  VVRALMRSRPSGGSFHIEDIQDQVELGLMRGGHHDVARAYVLYRERRTQERASQGRAPVA 142

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESD 197
           A   P + +    G  +  +  RL  ++E AC+ L  +     VL+ET +N+YDG+S  +
Sbjct: 143 AE--PAVMVTDR-GQRVPLDMARLAGLIEAACADLGPEAIGAPVLAETRRNLYDGVSIDE 199

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  A I ++RTLIEK+P+Y++VTAR L+  +RR+VL       ++ T  EM   Y +YF 
Sbjct: 200 VYKASILAARTLIEKDPSYSRVTARLLMHTIRRDVLG------EEVTQAEMAARYADYFP 253

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            +I++GV A LL E M  FDL  L   LK ERD  F+YLGLQ LYDRYFLHI   RIEMP
Sbjct: 254 AFIKKGVDAELLDERMAQFDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMP 313

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFN+GTR  QLSSC+LTTVP
Sbjct: 314 QAFFMRVAMGLALNEIDREARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVP 373

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+ A+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVA
Sbjct: 374 DDLEGIYDAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVA 433

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +  
Sbjct: 434 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGG 493

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP    DLHDL+G  FE AY  YE +ADRGEI  F+++ AV LWRK+L+MLFETG
Sbjct: 494 DWTLFSPANCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETG 553

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           HPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL  H  + + D
Sbjct: 554 HPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVD 613

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
             KL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ AL+ L +PYAS 
Sbjct: 614 QAKLCRTVTTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASN 673

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-L 736
           EAVE AD SME + +HA  AS ELA ERG Y++++GSLWD+G+ PIDSI LLAE R   L
Sbjct: 674 EAVEFADRSMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYL 733

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  + L WD L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+S
Sbjct: 734 DVDTRTTLDWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLS 793

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTVVN +LV +LK   LWD+ M+ DLK+ DGS+  I+R+P++LK+++ATAFE++  WL
Sbjct: 794 GEFTVVNEYLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWL 853

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST+
Sbjct: 854 VEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTV 913

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS---------SCTSDTECEVCQ 954
           K   G +NAV      S++    + S             D  CE CQ
Sbjct: 914 KA--GSMNAVSNGAHGSASEPAAVSSNEPATDVKFCAIDDPSCEACQ 958


>gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium
           vinosum DSM 180]
 gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium
           vinosum DSM 180]
          Length = 985

 Score = 1027 bits (2655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/975 (58%), Positives = 710/975 (72%), Gaps = 23/975 (2%)

Query: 2   HPSKDV---NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           HP++         +   P  A         VQVI+RNG +T FDPSKI  A+ KAF+AVE
Sbjct: 12  HPAQARHADPSASQTTTPDSAESTGHIPGRVQVIRRNGQITHFDPSKIMVAMTKAFLAVE 71

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G  A  S R+ D +  LTEQ V  L +       VHIEDIQDQVE +LM++G H+I R+Y
Sbjct: 72  GDSAGASSRIHDRVAELTEQVVGALTRRLSGGGTVHIEDIQDQVELALMRAGEHRIARDY 131

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS 177
           VLYRE R+  RAA+S +++ A   P  + + + DG+    +   +  ++EE+C  L  V 
Sbjct: 132 VLYREARARERAARSAAETAAIREPHPINVTLADGSTRPLDVAHMARLLEESCRDLDAVD 191

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
              +LS+T +N++DG+ E+D+  AL+ S+RTLIE+EP Y++  AR LL+ LRRE L  + 
Sbjct: 192 PNAILSDTLRNLFDGVREADVRQALVMSARTLIEREPQYSQAAARLLLDILRREALGFLD 251

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                 T  +M   Y +YF  YI+       L   +  +DL  L   LK ERD  F YLG
Sbjct: 252 LAVGVETQADMAERYGDYFAAYIKRAADLEHLDGQLARYDLKRLGAALKPERDLQFTYLG 311

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           LQ LYDRYF+H  +G R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FMCSTP
Sbjct: 312 LQTLYDRYFIHTADGIRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMCSTP 371

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSG+  PQLSSCFLTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI G
Sbjct: 372 TLFNSGSPRPQLSSCFLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKG 431

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNGKSQGVIPFLKVANDTA+AVNQGG+R+GAVCAYLETWHID+EEFLDLRKNTGDDRRRT
Sbjct: 432 TNGKSQGVIPFLKVANDTAIAVNQGGRRRGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 491

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PDLFMKRV ++  WTLFSPDE  DLHDL G+ FE AY  YE +A RGE+K+
Sbjct: 492 HDMNTANWVPDLFMKRVAEDGHWTLFSPDETPDLHDLTGQAFEQAYVAYEERAARGELKI 551

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +++ AV LWRKML MLFETGHPWI FKDPCN+R   QHVGVVHSSNLCTEITL+++  E
Sbjct: 552 SKRLKAVDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGVVHSSNLCTEITLHTNDLE 611

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGSINL AH  +   D  +L  T+RTA+R+LDNVID N + + +A+ SN  HR +
Sbjct: 612 AAVCNLGSINLAAHITDKGLDTQRLRRTVRTAMRMLDNVIDYNFYNVPQARASNLRHRPV 671

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGFQ AL+ L IPYAS EAV  AD+S E++S++AI AS +LA ERG Y SF+GSLW
Sbjct: 672 GLGLMGFQDALYRLRIPYASQEAVAFADQSTEYLSYYAIEASADLAAERGRYPSFEGSLW 731

Query: 717 DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            QGV PIDSIGL+ + R   L M+ +  L WD L++R++T+GMRNSNC+AIAPTATI+NI
Sbjct: 732 SQGVLPIDSIGLMEQGRGGYLQMDTSHTLDWDRLRERIQTVGMRNSNCLAIAPTATISNI 791

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVSQSI+P+YQNL+VKSN+SG+FTVVN +LV +LK+R LWD  M++DLKY+DGS+  I+
Sbjct: 792 VGVSQSIEPTYQNLFVKSNLSGEFTVVNPYLVADLKERGLWDAVMVNDLKYYDGSLLPID 851

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIPD+LK+++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ 
Sbjct: 852 RIPDELKELYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMQEPSGKKLDNLYKLAWVR 911

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS------------- 942
           GLKTTYYLRS  AT VEKST+    G+ N +     N        PS             
Sbjct: 912 GLKTTYYLRSMGATHVEKSTMADT-GRANRLSAVGGNYLGRQTAKPSDTTDDTPAAATAT 970

Query: 943 --SCTS-DTECEVCQ 954
             +C+  D +CE CQ
Sbjct: 971 PSACSILDPDCEACQ 985


>gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis MSMB43]
          Length = 956

 Score = 1026 bits (2654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/935 (58%), Positives = 688/935 (73%), Gaps = 21/935 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALALQTTYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R     + +    A     + D+G   + +   L  ++  AC GL D V+ + 
Sbjct: 131 REKRHLERVHAGEAAAVESSAAGGINVTDNGVTRALDLNALRALIVSACEGLGDAVNPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARVLLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 245 EEVTQAEMATRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLAKQADGTYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGLGIMGFQDCLHLLRTPYASGEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            GLKTTYYLR+ +AT VEKST+    G LNAVP +
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. 383]
 gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 998

 Score = 1026 bits (2654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/996 (55%), Positives = 690/996 (69%), Gaps = 57/996 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           RE+R   R       + A       I ++D+G     +   L  +V  AC GL   V+  
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASTGINVVDNGVTRPLDLNALRALVVSACDGLGAAVNPD 190

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VT+R LL  +RRE+L      
Sbjct: 191 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILG----- 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246 -EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305 TLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 485 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKK 544

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545 IPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIAV 604

Query: 600 CNLGSINLLAHFA---NNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH     +  F  D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605 CNLGSVNLVAHLVKQADGSFALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LHLL  PYAS  AV  AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665 PVGMGIMGFQDCLHLLRTPYASEAAVAFADRSMEAVCYYAYHASTELAEERGRYSSYRGS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 725 LWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTSLRSRIATHGMRNSNCVAIAPTATIS 784

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845 IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-------------------------- 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP                          
Sbjct: 905 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGAASS 962

Query: 928 ---VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              V    +          CT         ECE CQ
Sbjct: 963 SGAVDAAPALAPVEADGPVCTMRPGDPGFDECEACQ 998


>gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. SIP3-4]
 gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. SIP3-4]
          Length = 937

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/951 (59%), Positives = 702/951 (73%), Gaps = 28/951 (2%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
            A P L    P     +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  +
Sbjct: 6   TAQPVLNAALPS----LQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISSHMRTEV 61

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LT+  V  L++   +   +HIEDIQDQVE +LM+SG H + R YVLYRE+        
Sbjct: 62  QALTDTVVAALVRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RA 115

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYD 191
           +   +    AP L ++  DG  +  + + L  +V EAC  L D V   +++ +  +++YD
Sbjct: 116 AERAAQQAPAPTLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAIRDLYD 174

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+   ++  ALI S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   
Sbjct: 175 GMPFDEVRRALILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQR 228

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y EYF +YI+ G+ A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI  
Sbjct: 229 YAEYFPQYIKTGIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEE 288

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            RIE+PQ FFMRVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC
Sbjct: 289 RRIELPQVFFMRVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSC 348

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTV DDL GI+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV 
Sbjct: 349 YLTTVSDDLDGIYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVV 408

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+
Sbjct: 409 NDTAVAVNQGGKRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQ 468

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  NA WTLFSP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+
Sbjct: 469 RVQANADWTLFSPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLS 528

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH 
Sbjct: 529 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHL 588

Query: 612 ANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D  KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ AL
Sbjct: 589 KREGDSYVLDQAKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDAL 648

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H + +PYAS  AVE AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ 
Sbjct: 649 HAMRVPYASSAAVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLN 708

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL+E R  ++ ++R+S L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P Y
Sbjct: 709 LLSEARGGQVEVDRSSTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEY 768

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++A
Sbjct: 769 QNLYVKSNLSGEFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYA 828

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP+WL+E+A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS 
Sbjct: 829 TAFEVDPVWLVEAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSL 888

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---SSCTSDTECEVCQ 954
            ATS EKST +G  G+LNAV    P S+      P        D  CE CQ
Sbjct: 889 GATSAEKSTGQG--GELNAVSSGLPVSAASPSAEPEPKQCLIDDPGCEACQ 937


>gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            ambifaria MEX-5]
 gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            ambifaria MEX-5]
          Length = 1001

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/999 (55%), Positives = 690/999 (69%), Gaps = 60/999 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17   RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71   GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122  REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
            RE+R   R       + A       I ++D+G     +   L  ++  AC+GL   V+ +
Sbjct: 131  REKRHLERQHAGEEAAAAGGEASAGINVVDNGVTRPLDMNALRELIVSACAGLGAAVNPE 190

Query: 180  IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191  PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240  PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246  -EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300  ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
             LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305  TLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360  NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
            NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365  NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420  KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425  KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480  NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
            NTANWIPDLFMKRV + A WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 485  NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFKK 544

Query: 540  ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
            I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545  IPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600  CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605  CNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665  PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRGS 724

Query: 715  LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+
Sbjct: 725  LWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIAAHGMRNSNCVAIAPTATIS 784

Query: 774  NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785  NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834  IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845  IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894  LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-------------------------- 927
            L GLKTTYYLR+ +AT VEKST+    G LNAVP                          
Sbjct: 905  LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAGG 962

Query: 928  ------VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                  V    +          CT         ECE CQ
Sbjct: 963  GASSGAVNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 1001


>gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
 gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
          Length = 999

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/997 (55%), Positives = 687/997 (68%), Gaps = 58/997 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE+R   R       +    A     ++D+G     +   L  ++  AC+GL   V+ + 
Sbjct: 131 REKRHLERQHAGEEAAAGGEASAGINVVDNGVTRPLDMNALRELIVSACAGLGAAVNPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 245 EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGTDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS----------------- 937
            GLKTTYYLR+ +AT VEKST+    G LNAVP       + S                 
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGGSSSGGAQGAAGGFGAAGGDA 962

Query: 938 --------------LGIPSSCTSDT------ECEVCQ 954
                               CT         ECE CQ
Sbjct: 963 SSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. TJI49]
          Length = 963

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/936 (58%), Positives = 678/936 (72%), Gaps = 23/936 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAAQGAPALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIM--MDDGTLISFNSKRLEMIVEEACSGL-QDVSS 178
           RE+R   R       + A       ++  +D+G     +   L  +V  AC GL   V+ 
Sbjct: 131 REKRHLERQHAGEEAAVAGGEAAGGVINVVDNGVTRPLDLNALRALVVSACDGLGAAVNP 190

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 191 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 246

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L + L   RD  F YLGL
Sbjct: 247 --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDASRDLQFGYLGL 304

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 305 QTLYDRYFLHVGGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 364

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 365 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 424

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 425 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 484

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+
Sbjct: 485 MNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLFK 544

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 545 KIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEIA 604

Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 605 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 664

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 665 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 724

Query: 714 SLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 725 SLWDRGILPQDTLKLLAEARGGYVEVDSSESLDWTALRARIAAHGMRNSNCVAIAPTATI 784

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 785 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 844

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 845 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 904

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           WL GLKTTYYLR+ +AT VEKST+    G LNAVP 
Sbjct: 905 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 938


>gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 976

 Score = 1025 bits (2649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/973 (54%), Positives = 685/973 (70%), Gaps = 37/973 (3%)

Query: 12  EDAFPSLAYPFPEKI-----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
             A P      P            +I+RNG V  F+PSKI+ A+ KAF+AV G   + S 
Sbjct: 11  PSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASA 70

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           RV+++++NLT Q V  L+++  +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+
Sbjct: 71  RVRELVENLTSQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRT 130

Query: 127 DVRAAQSHSKSD-----APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
             RAA + ++       AP    L +    G     +   L   +  A  GL + + S+ 
Sbjct: 131 QERAAAAAAEGQEKSAAAPAEHVLNVTDA-GVRRPLDLAELRATIVAAGEGLAEFIDSEA 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EVL       
Sbjct: 190 ILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +   M   Y EYF  +I  G++  LL   + ++DL  L   L  +RD  F YLGLQ 
Sbjct: 244 EEVSQDGMVARYAEYFPTFIARGIEGGLLSPELANYDLTRLGKALNAKRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+
Sbjct: 364 SGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP +  DLHD YG+ FE AY  YE++   GE+K+++K+
Sbjct: 484 TANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYIGYEKRVASGELKLYKKM 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVC
Sbjct: 544 PALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVC 603

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH         + D DK+  T+  A+R+LDNVIDIN + +EKA+ SN  HR 
Sbjct: 604 NLGSVNLVAHMKPAAGGGFELDLDKIKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG Y S++GSL
Sbjct: 664 VGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSL 723

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+N
Sbjct: 724 WSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKQHGMRNSNCVAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I
Sbjct: 784 IIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW 
Sbjct: 844 DRVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWT 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD-------GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            GLKTTYYLR+  ATS EKST +G +       G+  A  V           + + CT  
Sbjct: 904 RGLKTTYYLRTLGATSAEKSTGRGGELNAVTAGGQSTAAAVGAAPVLPEPEVLGAVCTMR 963

Query: 948 T------ECEVCQ 954
                  ECE CQ
Sbjct: 964 PGDPGFEECEACQ 976


>gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           eutropha C91]
 gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           eutropha C91]
          Length = 957

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/951 (57%), Positives = 692/951 (72%), Gaps = 19/951 (1%)

Query: 10  GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
           G+    P+    + +     +VI+RNG V +F+P KIS A+ KAF+AV G  ++ S  ++
Sbjct: 20  GEMTDSPATRQDYSQ----YKVIRRNGAVVAFEPGKISIAMTKAFIAVRGGQSAASSSMR 75

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +I+  LT + V  L +        HIEDIQDQVE +LM+SG H + R YVLYREER+  R
Sbjct: 76  EIVAQLTGEVVHALTRRRPGGGTFHIEDIQDQVELALMRSGDHDVARAYVLYREERARER 135

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKN 188
           A Q      +  A  L I+ ++G  I  +  RL   +E AC  L   V++ +++    ++
Sbjct: 136 ARQQKEPPTSTQAAVLHIV-ENGQRIPLDPSRLTARIESACQHLGNVVNAGLIVKAMLRD 194

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+   ++  + I S+R LIEKEP Y+ VTAR LL+ +R EVL       +  +H  M
Sbjct: 195 LYDGVPAEEVRKSAILSARALIEKEPAYSFVTARLLLDNIRHEVLG------EDVSHEAM 248

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           Q  Y +YF  +I +G++A LL E +  FDL  L+  L  +RD  F YLGLQ LYDRYFLH
Sbjct: 249 QSRYADYFPGFIRQGMEAGLLDERLGQFDLARLSETLIADRDLQFGYLGLQTLYDRYFLH 308

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           I+  RIE+PQAFFMRVAMGLAL E ++E RA+EFY+LLS+F FM STPTLFNSGTR  QL
Sbjct: 309 ISERRIELPQAFFMRVAMGLALNEIDREARAIEFYHLLSTFDFMSSTPTLFNSGTRRSQL 368

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+L+TVPD L GI+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFL
Sbjct: 369 SSCYLSTVPDSLDGIYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFL 428

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV +DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDL
Sbjct: 429 KVVSDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDL 488

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKR+ ++  WTLFSP +  DLH+ YGK FE AY  YE QA +G + + ++I A  LWRK
Sbjct: 489 FMKRMLEDQEWTLFSPSDTPDLHEKYGKAFEEAYIAYEEQATQGRLALHKRIPARQLWRK 548

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPWITFKDPCNIRSPQ HVGVVHSSNLCTEITLN++ +E AVCNLGSINL 
Sbjct: 549 MLTMLFETGHPWITFKDPCNIRSPQNHVGVVHSSNLCTEITLNTNEKEIAVCNLGSINLP 608

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           AH  + + D  KL  T+ TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH
Sbjct: 609 AHIVDGKLDLTKLKQTVATAMRMLDNVIDINFYAVAKARNANLRHRPVGLGIMGFQDCLH 668

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L I YAS EAVE AD SME +++H   AS ELA+ERG Y+++ GSLW++G+ P DS+ L
Sbjct: 669 KLGISYASREAVEFADSSMEAVAYHTYWASTELAEERGTYATYHGSLWERGILPQDSLAL 728

Query: 729 LAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L E R   + ++ +S L W  L++R+K  GMRNSNC+AIAPTATI+NI GVS SI+P+YQ
Sbjct: 729 LQEERGGHVEVDTSSTLDWTPLRERIKQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQ 788

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLYVKSN+SG+FTVVN  LVN+LK++DLWDE MI+DLK++DG+   I+RIP++L+ ++AT
Sbjct: 789 NLYVKSNLSGEFTVVNQSLVNDLKKQDLWDEVMIADLKHYDGAASKIDRIPENLRALYAT 848

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFEIDP WL+E+A+RRQKWIDQAQSLNLY+   SGKK+D +YR AWL GLKTTYYLR+  
Sbjct: 849 AFEIDPRWLVEAAARRQKWIDQAQSLNLYMSGASGKKMDDLYRLAWLRGLKTTYYLRAMG 908

Query: 908 ATSVEKSTLKGVDGKLNAVPVTD----PNSSTHSLGIPSSCTSDTECEVCQ 954
           AT+ EKST+    G LNAVP        +S             D ECE CQ
Sbjct: 909 ATTAEKSTVH--TGTLNAVPAQQNGHTDSSGQIHSATKQCAIDDPECEACQ 957


>gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans C54]
          Length = 976

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/974 (54%), Positives = 686/974 (70%), Gaps = 39/974 (4%)

Query: 12  EDAFPSLAYPFPEKI-----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
             A P      P            +I+RNG V  F+P KI+ A+ KAF+AV G   + S 
Sbjct: 11  PSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASA 70

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           RV+++++ LT Q V  L+++       HIEDIQDQVE +LM+SG H + R YVLYRE+R+
Sbjct: 71  RVRELVEQLTTQAVNALVRNRPGGGTFHIEDIQDQVELALMRSGQHDVARAYVLYREKRT 130

Query: 127 DVRAA----QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
             RAA    +   K DA     +  + D G     +   L   +  A  GL + + S+ +
Sbjct: 131 QERAAAAAAEGQQKVDAVPQENVLHVTDAGVRRPLDIAELRATIVAAGEGLAEFIDSEAI 190

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EVL       +
Sbjct: 191 LKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------E 244

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + +   M   Y EYF  +I  G++  LL   +  +DL  L   L  +RD  F YLGLQ L
Sbjct: 245 EVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGKALNAKRDLQFGYLGLQTL 304

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI G+RIE+PQ FFMRVAMGLAL+ET++E RA+EFY +LSSF FM STPTLFNS
Sbjct: 305 YDRYFLHIRGTRIELPQVFFMRVAMGLALRETDREARAIEFYEILSSFDFMSSTPTLFNS 364

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+S
Sbjct: 365 GTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGES 424

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD+RRRTHDMNT
Sbjct: 425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNT 484

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP +  DLHD YGK FE AY  YE +   G++K+F+K+ 
Sbjct: 485 ANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGKAFEEAYVGYEARVASGDLKLFKKMP 544

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 545 ALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCN 604

Query: 602 LGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH         + D++K+  T+  A+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 605 LGSVNLVAHMKPAAGGGFELDHEKIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPV 664

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG Y S++GSLW
Sbjct: 665 GMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLW 724

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI
Sbjct: 725 SRGILPQDTLKMLRDERGGHVEVDESSTLDWDALRARIKQHGMRNSNCIAIAPTATISNI 784

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+
Sbjct: 785 IGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRID 844

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  
Sbjct: 845 RVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKR 904

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---------THSLGIPSSCTS 946
           GLKTTYYLR+  ATS EKST +G  G+LNAV     +++              + + CT 
Sbjct: 905 GLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGTSAAAPVSAAPVLPEPEVLGAVCTM 962

Query: 947 DT------ECEVCQ 954
                   ECE CQ
Sbjct: 963 RPGDPGFEECEACQ 976


>gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           solanacearum GMI1000]
 gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 987

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/990 (55%), Positives = 688/990 (69%), Gaps = 46/990 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H                A          ++I+RNG V  F+PSKI+ A+ KAF+AV G 
Sbjct: 8   IHSGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGG 67

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 68  QGAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 127

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           YRE RS  R AQ+      P    L +    G     +   L  ++  AC+GL + V  +
Sbjct: 128 YRERRSQER-AQAGETQQQPAFIGLNVTDG-GITRPLDMAALRNLIVSACAGLGESVDPE 185

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L      
Sbjct: 186 PILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG----- 240

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ
Sbjct: 241 -EEVTQAEMAGRYADYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQ 299

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 300 TLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLF 359

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 360 NSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 419

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 420 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 479

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 480 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEAAYLGYEDKVARGEIKLFKK 539

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 540 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 599

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 600 CNLGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 659

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGS
Sbjct: 660 PVGLGIMGFQDALHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGS 719

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+GV P DS+ LLA+ R   L  + +S + WD L++R++  GMRNSNC+AIAPTATI+
Sbjct: 720 LWDRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRERIQQHGMRNSNCVAIAPTATIS 779

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 780 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 839

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AW
Sbjct: 840 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAW 899

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP---------------------- 931
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 900 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDAGSVAAAGAAPVAPASALDTVA 957

Query: 932 -NSSTHSLGIPSSCTSDT------ECEVCQ 954
             +        + CT         ECE CQ
Sbjct: 958 ATAPAMPDAEGAVCTMRPGDPGFEECEACQ 987


>gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
 gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
          Length = 969

 Score = 1023 bits (2646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/967 (55%), Positives = 696/967 (71%), Gaps = 35/967 (3%)

Query: 13  DAFPSLAYPF-PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
            + P+ A P         ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S R++++
Sbjct: 13  TSKPAGAAPVVDSAYSNYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARIREL 72

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           ++ +T   V  L++   S  I HIEDIQDQVE +LM+SG  ++ R YVLYRE R+  RAA
Sbjct: 73  VEQMTGSVVNALVRRQPSGGIFHIEDIQDQVELALMRSGEAEVARAYVLYRERRAQERAA 132

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           +   +++      L +M  D      + + L+ ++E A  GL ++    +  ET KN+YD
Sbjct: 133 KQVEQAEQH---ALNVMDGD-IKRPLDVEALKALIESAAVGLNEIDVAHLQKETLKNLYD 188

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+   ++  + I +SR +IE EP+Y  VT+R LL  +RRE++       ++    EM  +
Sbjct: 189 GVKIDEVFKSAILASRAMIENEPSYTLVTSRLLLHTIRREIIG------REIAQDEMAQV 242

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           YPEYF ++I++G+ A LL   +  FD+  L   LKYERD  F+YLGLQ LYDRYFLH+ G
Sbjct: 243 YPEYFPQFIKKGIAAGLLDNRLAQFDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEG 302

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +RIEMPQAF+MRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFNSGT   QLSSC
Sbjct: 303 TRIEMPQAFYMRVAMGLALNEVDREARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSC 362

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTT+ DDL  I+  ++ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV 
Sbjct: 363 YLTTIGDDLDDIYEGIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVV 422

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK
Sbjct: 423 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 482

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +   WTLFSP +  DLHDLYGK FE AY  YE +A RG++K+F+ + A  LWRK+L+
Sbjct: 483 RVMEGGNWTLFSPSDCPDLHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILS 542

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H 
Sbjct: 543 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHL 602

Query: 612 ANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                     D++KL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ A
Sbjct: 603 KPADNGELVLDHEKLQKTVGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDA 662

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           LH++  PYAS +AVE ADESME I ++A  AS ELA ERGAYS+FKGSLWD+G+ P+DS+
Sbjct: 663 LHMMRKPYASRDAVEFADESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSL 722

Query: 727 GLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LL E R   + ++ +SR+ WD L+ R+K  GMRNSNC+AIAPTATI+NI GV+ SI+P+
Sbjct: 723 KLLEEERGGYVEVDTSSRMDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPT 782

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +QNLYVKSN+SG+FT+VN  LV +LK+  +WDE MISDLKY DGS+  I+RIP+DLK+++
Sbjct: 783 FQNLYVKSNLSGEFTIVNEHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLY 842

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+DP WL+E+A+RRQKWIDQ QSLN+Y+   SGK+LD  Y+ AW+ GLKTTYYLR+
Sbjct: 843 ATAFEMDPRWLVEAAARRQKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRT 902

Query: 906 RSATSVEKSTLKG-------VDGKLNAVPVTDPNSS-----THSLGIPSSCTSDT----- 948
             AT  EKSTL G        +G  +A   + P +               CT        
Sbjct: 903 IGATHAEKSTLAGGELNSVNAEGGASAAFTSAPATGLVPNLPEQEIEGKVCTMRPGDAGF 962

Query: 949 -ECEVCQ 954
            ECE CQ
Sbjct: 963 DECEACQ 969


>gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans
           lithotrophicus ES-1]
 gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 946

 Score = 1023 bits (2646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/955 (57%), Positives = 686/955 (71%), Gaps = 24/955 (2%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           +    S+       +   +VI+RNG V SF+PSKIS A+ KAF+AV G   + S RV+++
Sbjct: 4   QQNPESVTSSNNLPLDQYKVIRRNGSVVSFEPSKISIAVTKAFIAVNGGQGAASARVREL 63

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           ++ LT   V+ L++       +HIEDIQDQVE SLM+SG H + R YVLYRE+R+  R+ 
Sbjct: 64  VEQLTANVVSALIRRQPHGGTLHIEDIQDQVELSLMRSGEHDVARSYVLYREQRTRERSK 123

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMY 190
                  A   P L I   D      +  +L   ++ AC GL   V +  +L  T K++Y
Sbjct: 124 GKKEIDAA---PALNIKDGD-VTRPLDVVQLSAQIQSACVGLGGAVDADKILKLTLKDLY 179

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++  ++    I S+RTLIE++P Y+ VTAR LL  +  E+L        + +  +M  
Sbjct: 180 DGVAVEEVRKCAILSARTLIEQDPAYSFVTARLLLNNICCEILGG------QVSQADMAE 233

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            Y EYF ++I+ G++A LL+E +  FDL  LA  L   RD  F YLGLQ LYDRYFLH++
Sbjct: 234 RYAEYFPKFIKRGIEAELLNEELGHFDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVD 293

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G RIE+PQAFFMRVAMGL+L E  +E+RA+EFY LLSSF FM STPTLFNSGTR  QLSS
Sbjct: 294 GQRIELPQAFFMRVAMGLSLNEINREERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSS 353

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV
Sbjct: 354 CYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKV 413

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFM
Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFM 473

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +   WTLFSP    DLHD +G EFE AY  YE +   GE+K+F+K+ A +LWRKML
Sbjct: 474 KRVMEGGEWTLFSPSTCPDLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKML 533

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL AH
Sbjct: 534 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAH 593

Query: 611 F------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                     Q D+DKL  T+ TA+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ
Sbjct: 594 LFPKGHAKAGQIDHDKLKRTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQ 653

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             LH L IPY+S  A+E AD SME + ++A  AS +LA ERG Y+S++GSLWD+G+ P D
Sbjct: 654 DCLHDLRIPYSSDAAIEFADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQD 713

Query: 725 SIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           S+ LL E R   + ++ +S L WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+
Sbjct: 714 SLNLLLEQRGGYVEVDMSSNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIE 773

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P+YQN++VKSN+SG+FTV+N  LVN+LK   LWDE MI+DLKY DGS+  I+RIP +L++
Sbjct: 774 PTYQNIFVKSNLSGEFTVINDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRE 833

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++ATAFE++P WLIE+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AWL GLKTTYYL
Sbjct: 834 LYATAFEVEPKWLIEAASRRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYL 893

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS---CTSD-TECEVCQ 954
           R+  ATS EKST +   G LNAV          +  +      C+ D  ECE CQ
Sbjct: 894 RALGATSAEKSTSRA--GSLNAVSSGGGAGEMSASPVVEEAKFCSIDNPECEACQ 946


>gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
 gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
          Length = 987

 Score = 1023 bits (2646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/990 (55%), Positives = 688/990 (69%), Gaps = 46/990 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H                A    +     ++I+RNG V  F+PSKI+ A+ KAF+AV G 
Sbjct: 8   IHSGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGG 67

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 68  QGAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 127

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE RS  R AQ+      P    L +    G     +   L  ++  AC+GL D V  +
Sbjct: 128 YRERRSQER-AQAGETQQPPAFIGLNVTDG-GITRPLDMVALRNLIVSACAGLGDAVDPE 185

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L      
Sbjct: 186 PILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG----- 240

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ
Sbjct: 241 -EEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQ 299

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY+LLSSF FM STPTLF
Sbjct: 300 TLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYHLLSSFDFMSSTPTLF 359

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 360 NSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 419

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 420 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 479

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +N  WTLFSP    DLHD  G+ FE AY  YE +  RGEI +F+K
Sbjct: 480 NTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKK 539

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 540 MPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 599

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  T+R A+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 600 CNLGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHR 659

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGS
Sbjct: 660 PVGLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGS 719

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+
Sbjct: 720 LWDRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATIS 779

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 780 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 839

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AW
Sbjct: 840 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAW 899

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-----------------------VTD 930
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 900 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDAGSVSAAGAAPVAPASALDAVA 957

Query: 931 PNSSTHSLGIPSSCTSDT------ECEVCQ 954
             +        + CT         ECE CQ
Sbjct: 958 ATAPAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuG_Q212]
 gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuG_Q212]
          Length = 941

 Score = 1023 bits (2645), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/929 (60%), Positives = 693/929 (74%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +VHIE IQD+VE +LM +G HK  R YVLYREER      Q   +  +     + I 
Sbjct: 90  SGGVVHIETIQDKVELALMYAGLHKAARAYVLYREER----RKQREEQKASEAENTIHIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNAV
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNAV 921

Query: 927 PVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
              +          P++C   D +CE CQ
Sbjct: 922 TGQN---------NPNACAIDDPDCEACQ 941


>gi|207721466|ref|YP_002251906.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
 gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
          Length = 987

 Score = 1023 bits (2644), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/990 (55%), Positives = 687/990 (69%), Gaps = 46/990 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H                A    +     ++I+RNG V  F+PSKI+ A+ KAF+AV G 
Sbjct: 8   IHSGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGG 67

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 68  QGAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 127

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE RS  R AQ+      P    L +    G     +   L  ++  AC+GL D V  +
Sbjct: 128 YRERRSQER-AQAGETQQPPAFIGLNVTDG-GITRPLDMVALRNLIVSACAGLGDAVDPE 185

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L      
Sbjct: 186 PILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG----- 240

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ
Sbjct: 241 -EEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQ 299

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 300 TLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLF 359

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 360 NSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 419

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 420 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 479

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +N  WTLFSP    DLHD  G+ FE AY  YE +  RGEI +F+K
Sbjct: 480 NTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKK 539

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 540 MPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 599

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  T+R A+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 600 CNLGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHR 659

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGS
Sbjct: 660 PVGLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGS 719

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+
Sbjct: 720 LWDRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATIS 779

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 780 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 839

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AW
Sbjct: 840 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAW 899

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-----------------------VTD 930
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 900 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDAGSVSAAGAAPVAPASALDAVA 957

Query: 931 PNSSTHSLGIPSSCTSDT------ECEVCQ 954
             +        + CT         ECE CQ
Sbjct: 958 ATAPAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria MC40-6]
 gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria MC40-6]
          Length = 999

 Score = 1023 bits (2644), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/997 (55%), Positives = 688/997 (69%), Gaps = 58/997 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           RE+R   R       + A       I ++D+G     +   L  ++  AC+GL   V+ +
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVVDNGVTRPLDMNALRELIVSACAGLGAAVNPE 190

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246 -EEVLQAEMATRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305 TLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 485 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKK 544

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605 CNLGSVNLVAHLVKQADGSYALDQDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665 PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+
Sbjct: 725 LWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATIS 784

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845 IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------------- 937
           L GLKTTYYLR+ +AT VEKST+    G LNAVP      S+                  
Sbjct: 905 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGDA 962

Query: 938 --------------LGIPSSCTSDT------ECEVCQ 954
                               CT         ECE CQ
Sbjct: 963 SSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           europaea ATCC 19718]
 gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC
           19718]
          Length = 955

 Score = 1023 bits (2644), Expect = 0.0,   Method: Composition-based stats.
 Identities = 538/935 (57%), Positives = 693/935 (74%), Gaps = 13/935 (1%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +     ++I+RNG V +F+P KIS A+ KAF+AV G  ++ S  +++I+  LT + V  L
Sbjct: 30  QNYSQYKIIRRNGAVVAFEPGKISIALTKAFIAVRGGQSAASSSMREIVAQLTGEVVHAL 89

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            +        HIEDIQDQVE +LM+SG H I R YVLYREER+  RA Q  ++  +    
Sbjct: 90  TRRRPEGGTFHIEDIQDQVELALMRSGDHDIARAYVLYREERARERARQQSAQPASGQVA 149

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETAL 202
            L ++ ++G  I  +  +L   +E AC  L   V + +++    K++YDG+   ++  + 
Sbjct: 150 VLHVV-ENGQKIPLDPAQLMARIESACQNLGNTVDAALIVKSMLKDLYDGVPAEEVRKSA 208

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I S+R LIEKEP Y+ VTAR LL+ +R EVL       ++  H  MQ  Y EYF  ++ +
Sbjct: 209 ILSARALIEKEPAYSFVTARLLLDNIRYEVLG------EEVAHEAMQSRYAEYFPEFVRK 262

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G++A LL E +  FDL  L+  L  +RD  F YLGLQ LYDRYFLH++  RIE+PQ FFM
Sbjct: 263 GIEAGLLDERLGQFDLARLSEALAADRDLQFGYLGLQTLYDRYFLHVSERRIELPQIFFM 322

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLAL E ++E RA+EFY+LLS F FM STPTLFNSGTR  QLSSC+L+TVPD L G
Sbjct: 323 RVAMGLALNEIDREARAIEFYHLLSKFDFMSSTPTLFNSGTRRSQLSSCYLSTVPDSLDG 382

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGKSQGV+PFLKV +DTAVAVNQGG
Sbjct: 383 IYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGKSQGVVPFLKVVSDTAVAVNQGG 442

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKR+ ++  WTLF
Sbjct: 443 KRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTAVWVPDLFMKRMQEDQEWTLF 502

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +  DLHD +G+ FE AY  YE QA +G + +F++I A  LWRKMLTMLFETGHPWIT
Sbjct: 503 SPSDTPDLHDKFGRAFEEAYIAYEEQAAQGRLTLFKRIPARQLWRKMLTMLFETGHPWIT 562

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCNIRSPQ HVGVVHSSNLCTEITLN+S +E AVCNLGS+NLLAH  + + D  +L 
Sbjct: 563 FKDPCNIRSPQNHVGVVHSSNLCTEITLNTSEKEIAVCNLGSVNLLAHIVDGKLDQARLK 622

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T+ TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L I YASPEAVE 
Sbjct: 623 QTVTTAMRMLDNVIDINFYAVAKARNANFRHRPVGLGIMGFQDCLHKLGISYASPEAVEF 682

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741
           AD SME +++H   AS ELA+ERG Y++++GSLWD+G+ P D++ LL E R   + ++ +
Sbjct: 683 ADRSMEAVAYHTYWASTELAEERGTYATYRGSLWDRGILPQDTLELLREERGGHVEIDTS 742

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   WD L+ R++  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVKSN+SG+FTV
Sbjct: 743 STQDWDALRDRIRQYGMRNSNCLAIAPTATISNIIGVSASIEPTYQNLYVKSNLSGEFTV 802

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LVN+LK++DLWDE MI+DLK++DG++  I+R+P++L+ ++ATAFE+DP WL+E+AS
Sbjct: 803 VNQWLVNDLKKQDLWDEVMIADLKHYDGAVSKIDRVPENLRNLYATAFEVDPRWLVEAAS 862

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLNLY+   SGKK+D +YR AWL GLKTTYYLR+  AT+ EKST+    G
Sbjct: 863 RRQKWIDQAQSLNLYMAGASGKKMDELYRLAWLRGLKTTYYLRALGATTAEKSTVH--TG 920

Query: 922 KLNAVPVTDPNSSTH-SLGIPSSCTSD-TECEVCQ 954
            LNAVP      + + +   P  C  D  ECE CQ
Sbjct: 921 TLNAVPAQHEAHAGNLAHSAPQQCAIDNPECEACQ 955


>gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1003]
 gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1003]
          Length = 1000

 Score = 1022 bits (2643), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/930 (59%), Positives = 692/930 (74%), Gaps = 25/930 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G++   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGNQALAPQATYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  RA   H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 TQARA---HDEQAAGSTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELA+ERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL++R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWSELRQRIATYGMRNSNCIAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           TTYYLR+ +AT VEKST+    G LNAV  
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAVSS 932


>gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
 gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
          Length = 946

 Score = 1022 bits (2643), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/928 (58%), Positives = 678/928 (73%), Gaps = 20/928 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  +DPSKI  AI KAF+AVEG  A+ S R+ + +  LT+Q  T L Q + 
Sbjct: 37  LQVIKRNGKLVDYDPSKIRVAITKAFLAVEGGQAALSTRIHERVSQLTQQITTILQQRHP 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + IE IQDQVE +LM+   H++ R YVLYREER  +RA             +L+I 
Sbjct: 97  QGGTLSIETIQDQVELALMRVEAHQVARAYVLYREERRKMRAETKPHSEI-----QLQIT 151

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  +L +++ E C+ L+DV  + +L ET +N+YDG+  +D++ ALI S+R+
Sbjct: 152 LTDGSQRPLDLIQLSLLITETCNDLKDVKHERILQETLRNLYDGMPAADIDKALIISARS 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E +P Y   TARFLL  L  E L  +        H     +Y  YF  YI+ G++  L
Sbjct: 212 LVEHDPQYTYATARFLLRTLYAEALHFLELPLHTHRH---SGIYSHYFQHYIKRGIQLEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  L+  L  ERD  F YLGLQ LYDRYFLH +  R E+PQAFFMRVAMGL
Sbjct: 269 LDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A  E+ K  RA+EFY+LLSSF +M STPTLFNSGT  PQLSSCFLTTV DDL  I+ A++
Sbjct: 329 AQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAIK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWTPVR +GA I GTNGKS GV+PFL VAN +AVAVNQGGKRKGAV
Sbjct: 389 DNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR+ +   WTLFSPDE  
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDETP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G  FE  Y+ YE +A RGEIK F+ I A  LWRKML++LFETGHPWITFKDPCN
Sbjct: 509 DLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRT 627
           +RSPQQHVG +HSSNLCTEITLN+S +E AVCNLGSINL  H     + +  KL  TIRT
Sbjct: 569 LRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIRT 628

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +T+ +A++SN  HR IGLGLMGFQ AL+ L +PYAS  A+  AD++M
Sbjct: 629 AIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQTM 688

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS +LA ERGAY SF GSLW QGV P+DSI  L + R E L  +RT+RL W
Sbjct: 689 ELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDRTARLDW 748

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+K+V   GMR+SNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSG+FT++N +L
Sbjct: 749 DTLRKKVM-HGMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPYL 807

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +N+LK   LWD  M++DLKY+DGS+  IERIPD LK+++ATAFEI   WL+E+ SRRQKW
Sbjct: 808 INDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQKW 867

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ+QSLNLY+   SGKKLD +Y+Q WL GLKT+YYLR+  AT  EK+TL      LN+V
Sbjct: 868 IDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATLAKSH--LNSV 925

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +       +++  P+    D +CE CQ
Sbjct: 926 HM-------NTVATPACSIVDPDCESCQ 946


>gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii Dugway 5J108-111]
 gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuK_Q154]
 gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuK_Q154]
          Length = 941

 Score = 1022 bits (2643), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/929 (60%), Positives = 692/929 (74%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   VHIE IQD+VE +LM +G HK  R YVLYREER      Q   +  +     + I 
Sbjct: 90  SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREER----RKQREEQKASEAENTIHIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNAV
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNAV 921

Query: 927 PVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
              +          P++C   D +CE CQ
Sbjct: 922 TGQN---------NPNACAIDDPDCEACQ 941


>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas
           arsenicoxydans]
 gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Herminiimonas arsenicoxydans]
          Length = 966

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/964 (57%), Positives = 690/964 (71%), Gaps = 21/964 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  N        S        +   ++++RNG V  F+PSKIS A+ KAF+AV G   
Sbjct: 12  PTEISNIAPLAVAASTPSVNSAALGDYRILRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 72  AASARVRELVEQLTTNVVNALMRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
            +R + RA Q  +K       +L +  ++G     +  ++  ++  AC GL+  V +  +
Sbjct: 132 FKRMEERAQQQAAKPVVETEHQLHVT-ENGQRRPLDMNQVRDLITAACIGLEKHVDADAI 190

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+YDG+   +L  + I ++R L+EK+P Y+ VTAR L+  +R+EV        +
Sbjct: 191 LRETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFG------R 244

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +         Y  YF  +I++G+ A LL   + +FDL  LA+ LK ERD  F YLGLQ L
Sbjct: 245 EVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGEFDLKKLADALKPERDLQFGYLGLQTL 304

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI   RIEMPQAF+MRVAMGLAL E  +E+RA+EFYNLLSSF FM STPTLFNS
Sbjct: 305 YDRYFLHIADQRIEMPQAFYMRVAMGLALNEANREERAIEFYNLLSSFDFMSSTPTLFNS 364

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT+  QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 365 GTQRSQLSSCYLTTVADDLGGIYDAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 424

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT
Sbjct: 425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 484

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP +  DLHD  GK FE AY  YE +A RGE+K+F+KI 
Sbjct: 485 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEEAYTGYEAKAARGELKLFKKIQ 544

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 545 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCN 604

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+N+ AH  + + D+ KL  TIRTA+R+LDNVIDIN + + KA+ SN  HR +G+G+M
Sbjct: 605 LGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNVIDINYYAVNKARDSNLRHRPVGMGIM 664

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ  LH++ IPYAS +AV+ AD SME + ++A  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 665 GFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAYYASTELAEERGRYSSYKGSLWDRGIL 724

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P DS+ LLA+ R    L  + +    W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 725 PQDSLKLLADERGAKYLEADYSETFDWTPLRARIKEFGMRNSNCVAIAPTATISNIIGVS 784

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+  I+RIP 
Sbjct: 785 ACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQ 844

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKT
Sbjct: 845 DLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKT 904

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI---PSSCTSDT------EC 950
           TYYLR+  AT  EKST K   G LNAV     +S+           +C          EC
Sbjct: 905 TYYLRTMGATHTEKSTSK--TGALNAVDSGGGSSTAAQSAAETDGPACILRPGDAGFEEC 962

Query: 951 EVCQ 954
           E CQ
Sbjct: 963 EACQ 966


>gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 493]
 gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 331]
 gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           RSA 493]
 gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 331]
          Length = 941

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/929 (60%), Positives = 692/929 (74%), Gaps = 20/929 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +   
Sbjct: 30  LRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRWP 89

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   VHIE IQD+VE +LM +G HK  R YVLYREER      Q   +  +     + I 
Sbjct: 90  SGGAVHIETIQDKVELALMYAGLHKAARAYVLYREER----RKQREEQKASEAENTIHIT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++RT
Sbjct: 146 LDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTART 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++   
Sbjct: 206 LVENEPNYTYVTARLLLHDLYREVLNGL-NLPQDLMHEDIAHYYPEAFKNFIRHGIETEH 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMGL
Sbjct: 265 LHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGL 324

Query: 329 ALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A  E E + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GAL
Sbjct: 325 AQSEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGAL 384

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKGA
Sbjct: 385 KDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKGA 444

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDEV
Sbjct: 445 VCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEV 504

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD C
Sbjct: 505 PDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDAC 563

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           NIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +T
Sbjct: 564 NIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTKT 623

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+SM
Sbjct: 624 AIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSM 683

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPW 746
           E IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R +    N    L W
Sbjct: 684 ETISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDW 743

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +L
Sbjct: 744 NALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYL 803

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQKW
Sbjct: 804 VRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKW 863

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNAV
Sbjct: 864 IDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNAV 921

Query: 927 PVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
              +          P++C   D +CE CQ
Sbjct: 922 TGQN---------NPNACAIDDPDCEACQ 941


>gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
 gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
          Length = 987

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/987 (56%), Positives = 688/987 (69%), Gaps = 42/987 (4%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           H                A    +     ++I+RNG V  F+PSKI+ A+ KAF+AV G  
Sbjct: 9   HSGTANPAAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQ 68

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLY
Sbjct: 69  GAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 128

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE R+  R AQ+      P    L +    G     +   L  ++  AC+GL + V  + 
Sbjct: 129 RERRAQER-AQAGETQQPPAFIGLNVTDG-GITRPLDMAALRNLIVSACAGLGEAVDPEP 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++VTAR LL  +RRE+L       
Sbjct: 187 ILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQVTARILLHTIRREILG------ 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y +YF ++I+ G+ A LL E +  FDL  L   L   RD  F YLGLQ 
Sbjct: 241 EEVTQAEMAARYADYFPQFIKRGINAGLLDEKLAQFDLAKLGAALDASRDLQFNYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L+DRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN
Sbjct: 301 LFDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDRESRAIEFYQLLSSFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 361 SGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +N  WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K+
Sbjct: 481 TANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGKAFETAYLGYEEKVARGEIKLFKKM 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVC
Sbjct: 541 PAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVC 600

Query: 601 NLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR 
Sbjct: 601 NLGSVNLVAHLVTQADGSVALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRP 660

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ ALH+L IPYAS  AV+ AD SME + ++A  AS ELA+ERG YS++KGSL
Sbjct: 661 VGLGIMGFQDALHVLRIPYASDAAVQFADNSMEAVCYYAYWASTELAEERGRYSTYKGSL 720

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+N
Sbjct: 721 WDRGILPQDSLKLLAQERGGYLEADLSSSMDWDSLRARIQQYGMRNSNCVAIAPTATISN 780

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I
Sbjct: 781 IIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARI 840

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL
Sbjct: 841 DRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWL 900

Query: 895 MGLKTTYYLRSRSATSVEKSTLK------------------------GVDGKLNAVPVTD 930
            GLKTTYYLR+  AT VEKST+                              L+AV  T 
Sbjct: 901 RGLKTTYYLRTIGATHVEKSTVSRGTLNAVSSGSDVGSVSAAGASPVAPASALDAVAATA 960

Query: 931 PNSSTHSLGIPSSCTSDT---ECEVCQ 954
           P        + +    D    ECE CQ
Sbjct: 961 PAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria AMMD]
 gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria AMMD]
          Length = 999

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/997 (55%), Positives = 689/997 (69%), Gaps = 58/997 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKI-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           RE+R   R       + A       I ++D+G     +   L  ++  +C+GL   V+ +
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVVDNGVTRPLDMNALRELIVSSCAGLGAAVNPE 190

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 191 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 246 -EEVLQAEMTTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQ 304

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 305 TLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLF 364

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 365 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 424

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 425 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 484

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 485 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKK 544

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 545 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 604

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 605 CNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 665 PVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+
Sbjct: 725 LWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATIS 784

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 785 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 844

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 845 IDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 904

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------------- 937
           L GLKTTYYLR+ +AT VEKST+    G LNAVP      S+                  
Sbjct: 905 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGDA 962

Query: 938 --------------LGIPSSCTSDT------ECEVCQ 954
                               CT         ECE CQ
Sbjct: 963 SSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phytofirmans PsJN]
 gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phytofirmans PsJN]
          Length = 1001

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/929 (59%), Positives = 687/929 (73%), Gaps = 25/929 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQARG---HDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILK------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHDL+G +FE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDLFGADFEKAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLA+ R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           TTYYLR+ +AT VEKST+    G LNAV 
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAVS 931


>gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia
           solanacearum CFBP2957]
 gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 987

 Score = 1021 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/988 (55%), Positives = 690/988 (69%), Gaps = 42/988 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H           +    A    +     ++I+RNG V  F+PSKI+ A+ KAF+AV G 
Sbjct: 8   IHSGTANPTAFSQSTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGG 67

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 68  QGAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 127

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE RS  R AQ+      P    L +    G     +   L  ++  AC+GL D V  +
Sbjct: 128 YRERRSQER-AQAGETQQQPAFIGLNVTDG-GITRPLDMAALRNLIVSACAGLGDTVDPE 185

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L      
Sbjct: 186 PILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG----- 240

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ
Sbjct: 241 -EEVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQ 299

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 300 TLYDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLF 359

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 360 NSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 419

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 420 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 479

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +N  WTLFSP    DLHD  G+ FE AY  YE +  RGEIK+F+K
Sbjct: 480 NTANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEIKLFKK 539

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 540 MPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 599

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 600 CNLGSVNLVAHLVQQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 659

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGS
Sbjct: 660 PVGLGVMGFQDALHVLRIPYANDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGS 719

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+
Sbjct: 720 LWDRGILPQDSLKLLAQERGGYLETDLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATIS 779

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 780 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 839

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AW
Sbjct: 840 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAW 899

Query: 894 LMGLKTTYYLRSRSATSVEKSTLK------------------------GVDGKLNAVPVT 929
           L GLKTTYYLR+  AT VEKST+                              L+AV  T
Sbjct: 900 LRGLKTTYYLRTIGATHVEKSTVSRGTLNAVSSGSDVGSVSAAGAAPVAPASALDAVAAT 959

Query: 930 DPNSSTHSLGIPSSCTSDT---ECEVCQ 954
            P        + +    D    ECE CQ
Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1001]
 gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1001]
          Length = 1006

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/928 (59%), Positives = 689/928 (74%), Gaps = 25/928 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 TQARG---HDEQAAASTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCIAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           TTYYLR+ +AT VEKST+    G LNAV
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAV 930


>gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. MP688]
 gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. MP688]
          Length = 937

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/951 (59%), Positives = 706/951 (74%), Gaps = 28/951 (2%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
            A P L    P     +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  +
Sbjct: 6   TAQPVLNAALPS----LQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISTHMRTEV 61

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LT+  V  L++   +   +HIEDIQDQVE +LM+SG H + R YVLYRE+        
Sbjct: 62  QALTDTVVAALVRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RA 115

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYD 191
           +   +    AP L ++  DG  +  + + L  +V EAC  L D V   +++ +  +++YD
Sbjct: 116 AERAAQQAPAPTLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAMRDLYD 174

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+   ++  ALI S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   
Sbjct: 175 GMPFDEVRRALILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQR 228

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y EYF +YI+ G+ A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI  
Sbjct: 229 YAEYFPQYIKAGIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEE 288

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            RIE+PQ FFMRVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC
Sbjct: 289 RRIELPQVFFMRVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSC 348

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTV DDL GI+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV 
Sbjct: 349 YLTTVSDDLDGIYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVV 408

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+
Sbjct: 409 NDTAVAVNQGGKRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQ 468

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  NA WTLFSP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+
Sbjct: 469 RVQANADWTLFSPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLS 528

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH 
Sbjct: 529 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHL 588

Query: 612 ANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D  KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ AL
Sbjct: 589 KREGDSYVLDQTKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDAL 648

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H + +PYAS  AVE AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ 
Sbjct: 649 HAMRVPYASAAAVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLN 708

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL+E R  ++ ++R+  L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P Y
Sbjct: 709 LLSEARGGQVEVDRSRTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEY 768

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++A
Sbjct: 769 QNLYVKSNLSGEFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYA 828

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP+WL+E+A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS 
Sbjct: 829 TAFEVDPVWLVEAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSL 888

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDP--NSSTHSLGIPSSC-TSDTECEVCQ 954
            ATS EKST +G  G+LNAV    P   ++T++   P  C   D +CE CQ
Sbjct: 889 GATSAEKSTGQG--GELNAVSSALPAVAAATNAEPEPKQCLIDDPDCEACQ 937


>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae
           SmR1]
 gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/967 (56%), Positives = 694/967 (71%), Gaps = 47/967 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   ++I+RNG V  F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V+ L++
Sbjct: 37  LGEYRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVR 96

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +    HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  +     +AP+L
Sbjct: 97  RQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQGAATKTEVVAPQL 156

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            +  +DG     +   +  ++  AC GL++ V  + +L+ET KN+YDG+   +L  + I 
Sbjct: 157 HVT-EDGQSRPLDINEVRSLIAAACVGLEEHVDGEAILAETVKNLYDGVPVEELYKSAIL 215

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++R L+EK+P Y++VT+R L+  +R+EV        ++    +    Y EYF +Y+++G+
Sbjct: 216 AARALMEKDPAYSQVTSRLLMHTIRKEVFG------KEVAQADAPAEYLEYFPQYVKKGI 269

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL   +  FDL  LA  LK ERD  F Y+GLQ LYDRYFLHI G+RIEMPQAF+MRV
Sbjct: 270 EAELLDTKLAQFDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGGTRIEMPQAFYMRV 329

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY+LLSSF FM STPTLFNSGT+  QLSSC+LTTV DDL GI+
Sbjct: 330 AMGLALNEIDRETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLDGIY 389

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A++ENA+LAK++GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 390 EAIKENALLAKFAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 449

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP
Sbjct: 450 KGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSP 509

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +  DLHD +G+ FE AY  YE +A RGE+K+F+K+ A  LWRKML+MLFETGHPWITFK
Sbjct: 510 SDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLSMLFETGHPWITFK 569

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH  N + D+ KL  T
Sbjct: 570 DPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHLVNGELDHAKLQKT 629

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           IRTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+  +PYAS +AVE AD
Sbjct: 630 IRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKRVPYASMDAVEFAD 689

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
            SME + ++A  AS ELA+ERG Y+S++GSLWD+G+ P DS+ LLA+ R   L  + T  
Sbjct: 690 RSMEAVCYYAYMASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQERGGYLETDSTET 749

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+FT +N
Sbjct: 750 LDWAALRARIAEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEIN 809

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE+DP WL+E+ASRR
Sbjct: 810 EYLVRDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFEVDPSWLVEAASRR 869

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGK+LD  Y+ AWL GLKTTYYLR+  AT  EKST +   G L
Sbjct: 870 QKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSRA--GAL 927

Query: 924 NAVPV------------------------------TDPNSSTHSLGIPSSCTSDT----- 948
           NAV V                                PN           CT        
Sbjct: 928 NAVAVDGGAGAMASASGTAVPAAPIASAATASAAYVMPNPGAAIEADGPVCTMRPGDAGF 987

Query: 949 -ECEVCQ 954
            ECE CQ
Sbjct: 988 EECEACQ 994


>gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha JMP134]
 gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 979

 Score = 1020 bits (2638), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/952 (58%), Positives = 694/952 (72%), Gaps = 32/952 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKIIRRNGAVVAFEPSKINVAMTKAFLAVNGGQGAASARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             S   +HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA+ S           ++
Sbjct: 96  RPSGGAIHIEDVQDHVELALMRSGEHEVARSYVLYREKRAQERASASAQAVARVQESGIQ 155

Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             + D G     +   L  +++ AC+GL + VS++ +L ET KN+Y+G+  + +  + I 
Sbjct: 156 FNVTDAGVTKPLDIVALHDLLDTACAGLGKAVSAEPILKETLKNLYEGVPMTQVYDSAIL 215

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++RTLIEK+P+Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G+
Sbjct: 216 AARTLIEKDPDYSQVTARILLHTIRKEILGA------EVTQAEMTTRYAEYFPKFIARGI 269

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            A LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRV
Sbjct: 270 AAELLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRV 329

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 330 AMGLALNEADREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 389

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 390 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 449

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP
Sbjct: 450 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSP 509

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFK
Sbjct: 510 STCPDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFK 569

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYD 619
           DPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+ 
Sbjct: 570 DPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHA 629

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  A
Sbjct: 630 KLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAA 689

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738
           V+ AD SME + ++A  AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R   L +
Sbjct: 690 VKFADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLEV 749

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + +S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+
Sbjct: 750 DHSSSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 809

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTVVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E
Sbjct: 810 FTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVE 869

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+  
Sbjct: 870 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTV-- 927

Query: 919 VDGKLNAVPVTDPNSSTHSLGI----------PSSCTSDT------ECEVCQ 954
             G LNAV       S                 + CT         ECE CQ
Sbjct: 928 SRGSLNAVSSGSDGGSAMDAAAASAPAMPEAEGAVCTMRPGDPGFEECEACQ 979


>gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           mobilis JLW8]
 gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           mobilis JLW8]
          Length = 938

 Score = 1020 bits (2638), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/952 (59%), Positives = 705/952 (74%), Gaps = 24/952 (2%)

Query: 12  EDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
           +D  PS +    +   +  +QVI+RNG   +F+  KIS AI KAF+AVEG  ++ S RV+
Sbjct: 2   DDIKPSSSTDSVQATMLPMLQVIRRNGAAVTFNLDKISIAITKAFLAVEGNHSAASQRVR 61

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           D + +L++     L++   +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  R
Sbjct: 62  DQVTSLSQIVNHALIRRLPTGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAER 121

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKN 188
           AA+  + S+   A  + I   DG L+  N K+L  +V EAC  L  +V   +V+ +  ++
Sbjct: 122 AAEKATTSEPSHALNVNI---DGKLVPLNIKQLNEMVAEACLNLGNEVDVNLVVEQAVRD 178

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+  +++  ALI S+R+LIE EP Y  VTAR  L+ +R EVL       ++ +H EM
Sbjct: 179 LYDGIPFTEVYKALILSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAEM 232

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y EYF RYI+ G+ A LL   +  FDL  LAN L  ERDF F YLG+Q LYDRYFLH
Sbjct: 233 DAHYAEYFPRYIKIGIDADLLDPRLAQFDLDKLANALVKERDFQFGYLGIQTLYDRYFLH 292

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           I   RIE+PQ FFMRVAMGLA+ E ++E RA+EFYN+LS+F FM STPTLFN+GT H QL
Sbjct: 293 IEERRIELPQIFFMRVAMGLAINEIDREARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQL 352

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTTV DDL GI+  ++ENA+L KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFL
Sbjct: 353 SSCYLTTVSDDLDGIYQGIKENALLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFL 412

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDL
Sbjct: 413 KVVNDTAVAVNQGGKRKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDL 472

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RVT+   WTLFSP +V DLHD YGK FE AY  YER+AD GEIK+F+++ A+ +WRK
Sbjct: 473 FMRRVTEQGEWTLFSPSDVPDLHDKYGKAFEKAYVEYERRADTGEIKLFKRVPAIQMWRK 532

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL
Sbjct: 533 MLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLL 592

Query: 609 AHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            H      N + D DKL +TI+  +R+LDNV+DIN + + KA+ SN  HR +G+G+MGFQ
Sbjct: 593 QHLKEVNGNLELDNDKLQATIKVGMRMLDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQ 652

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + LH + IPYAS +AVE AD +ME + ++A  AS  LA+ERG YSSFKGSLWDQG+ P+D
Sbjct: 653 NCLHAMRIPYASMDAVEFADRAMEMVCYNAYWASTVLAEERGPYSSFKGSLWDQGILPLD 712

Query: 725 SIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           ++ LL   R   + ++R+  L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+
Sbjct: 713 TLNLLEAERGGNVEVDRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIE 772

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P YQNLYVKSN+SG+FT+VN  LVN+LK R LWD  M+SDLKY DGS+  IER+P DLK+
Sbjct: 773 PEYQNLYVKSNLSGEFTIVNEQLVNDLKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQ 832

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++ATAF++DP WLIE+A+RRQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYL
Sbjct: 833 LYATAFDVDPSWLIEAAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYL 892

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           RS  AT+ EKST  G  G+LNAV       +T     P  C+ D  +CE CQ
Sbjct: 893 RSLGATAAEKST--GSGGELNAVSAH----TTAPEPAPKMCSIDNPDCESCQ 938


>gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           petrii DSM 12804]
 gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           petrii]
          Length = 974

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/972 (55%), Positives = 691/972 (71%), Gaps = 37/972 (3%)

Query: 12  EDAFPSLAYPFPEKI-----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
             A P      P            VI+RNG V  F+PSKI+ A+ KAF+AV G   + S 
Sbjct: 11  PSAVPPSQTDVPADANGGQWASYNVIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASA 70

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           RV+++++ L  Q V  L+++  +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+
Sbjct: 71  RVRELVETLASQAVNALVRNRPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRA 130

Query: 127 DVRAAQS---HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVL 182
             RAA +      + A        ++D+G     +   L   +E A  GL + + ++ +L
Sbjct: 131 QERAAAAEVLEKTAPAVAQESHLNVVDNGVRRPLDLAALRATIEAAGEGLSEFIDTEAIL 190

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EVL       ++
Sbjct: 191 KETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEVLG------EE 244

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
            +   M   Y EYF  +I+ G++  LL   + ++DL  +   L   RD  F YLGLQ LY
Sbjct: 245 VSQAGMATRYAEYFPTFIQRGIEGGLLDAKLAEYDLARVGAALDARRDLQFGYLGLQTLY 304

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLHI G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM STPTLFNSG
Sbjct: 305 DRYFLHIRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFNSG 364

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQ
Sbjct: 365 TLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQ 424

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTA
Sbjct: 425 GVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTA 484

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+F+K+ A
Sbjct: 485 NWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYLGYEAKVASGELKLFKKMPA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
           ++LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNL
Sbjct: 545 ISLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNL 604

Query: 603 GSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           GS+NL+AH         + D+DKL  T+  A+R+LDNVIDIN + ++KAK SN  HR +G
Sbjct: 605 GSVNLVAHMKPAAAGGFELDHDKLKRTVGIAMRMLDNVIDINYYAVKKAKDSNERHRPVG 664

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS ELAQERG Y S++GSLW 
Sbjct: 665 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGRYPSYEGSLWS 724

Query: 718 QGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +G+ P D++ +L + R   + ++ +S L W+ L+ R+K  GMRNSNC+AIAPTATI+NI 
Sbjct: 725 RGILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMRNSNCIAIAPTATISNII 784

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R
Sbjct: 785 GVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDR 844

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           +P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  G
Sbjct: 845 VPSELRELYATAFEVEPRWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRG 904

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCTSDT 948
           LKTTYYLR+  ATS EKST +G  G+LNAV      ++             + + CT   
Sbjct: 905 LKTTYYLRTLGATSAEKSTGRG--GELNAVSAGQAATAVTAAAPNLPEPEVLGAVCTMRP 962

Query: 949 ------ECEVCQ 954
                 ECE CQ
Sbjct: 963 GDPGFEECEACQ 974


>gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CMR15]
          Length = 987

 Score = 1020 bits (2637), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/990 (55%), Positives = 685/990 (69%), Gaps = 46/990 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H                A          ++I+RNG V  F+PSKI+ A+ KAF+AV G 
Sbjct: 8   IHSGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGG 67

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 68  QGAASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 127

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSK 179
           YRE RS  R AQ+      P    L +    G     +   L  ++  AC+ L + V  +
Sbjct: 128 YRERRSQER-AQAGETQQQPAFIGLNVTDG-GITRPLDMAALRNLIVSACADLGESVDPE 185

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L      
Sbjct: 186 PILKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG----- 240

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RD  F YLGLQ
Sbjct: 241 -EEVTQAEMAGRYADYFPQFIKRGINAGLLDDKLAQFDLAKLGAALDASRDLQFNYLGLQ 299

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RAVEFY LLSSF FM STPTLF
Sbjct: 300 TLYDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDREARAVEFYQLLSSFDFMSSTPTLF 359

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 360 NSGTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 419

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 420 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 479

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  G+ FE AY  YE +  RGEIK+F+K
Sbjct: 480 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGRAFEAAYLGYEEKVARGEIKLFKK 539

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 540 MPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 599

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 600 CNLGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 659

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ +LH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGS
Sbjct: 660 PVGLGIMGFQDSLHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGS 719

Query: 715 LWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+GV P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+
Sbjct: 720 LWDRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRARIQQHGMRNSNCVAIAPTATIS 779

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 780 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 839

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AW
Sbjct: 840 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAW 899

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP---------------------- 931
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 900 LRGLKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDVGSVAAAGAAPVASASALDSVA 957

Query: 932 -NSSTHSLGIPSSCTSDT------ECEVCQ 954
             +        + CT         ECE CQ
Sbjct: 958 ATAPAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           avium 197N]
 gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium
           197N]
          Length = 970

 Score = 1019 bits (2635), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/948 (56%), Positives = 694/948 (73%), Gaps = 29/948 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
               +I+RNG V  F+P KI+ A+ KAF+AV G   + S RV++++  LTEQ V  L+++
Sbjct: 32  ASYNLIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGAASARVRELVGQLTEQVVNALVRN 91

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPK 144
             S    HIED+QDQVE SLM+SG H + R YVLYRE R+  RAA +  +  A  P  P 
Sbjct: 92  RPSGGTFHIEDVQDQVELSLMRSGQHDVARAYVLYRERRAQERAAAAEVQDKAAVPAEPT 151

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           L +  D+G     +  +L   +E A  GL + + ++ +L ET KN+YDG+   ++  + I
Sbjct: 152 LNV-NDNGVRRPLDMAQLRATIEAAGVGLTEFIDTETILKETVKNLYDGVPVDEVFKSAI 210

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++R L+EK+P Y++VTAR LL  +R+EVL       ++ +   M   Y  YF  +I+ G
Sbjct: 211 LAARALVEKDPAYSQVTARLLLHTIRKEVLG------EEVSQASMAERYATYFPTFIQRG 264

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           ++A LL   + +FDL  +A  L   RD  F YLGLQ LYDRYFLH+ G+RIE+PQ FFMR
Sbjct: 265 IEAGLLDAKLAEFDLERIARALNANRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMR 324

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLAL+E+++E RA+EFY +LSSF FM STPTLFNSGT H QLSSC+LTTV DDL GI
Sbjct: 325 VAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGI 384

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+SQGV+PFLKV NDTAVAVNQGGK
Sbjct: 385 YDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGK 444

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV +N  WTLFS
Sbjct: 445 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFS 504

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +  DLHD YG+ FE AY  YE +A  GE+K+F+K+ A++LWRKML+MLFETGHPWITF
Sbjct: 505 PSDCPDLHDKYGRAFEQAYLGYEAKAASGELKLFKKMPAISLWRKMLSMLFETGHPWITF 564

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDY 618
           KDPCNIRSPQQH+GVVHSSNLCTEITLN++  E AVCNLGS+NL+AH         + D+
Sbjct: 565 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPSANGGYELDH 624

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           DK+  T+  A+R+LDNVIDIN + +EKA+ SN  HR +GLG+MGFQ  LH++ +PYAS  
Sbjct: 625 DKIKHTVGIAMRMLDNVIDINYYAVEKARNSNLRHRPVGLGIMGFQDCLHMMRVPYASQA 684

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737
           A+E AD SME + + A  AS  LA+ERG Y S++GSLW +G+ P DSI +L + R   + 
Sbjct: 685 AIEFADRSMEAVCYQAYWASSTLAEERGRYPSYEGSLWSRGILPQDSIAMLRDERGGNVD 744

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG
Sbjct: 745 VDESSSLDWDTLRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 804

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN +LV +LK+  LWDE M++DLKY DGS+  I+R+P +L++++ATAFE++P WL+
Sbjct: 805 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLV 864

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  ATS EKST +
Sbjct: 865 ECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTMGATSAEKSTGR 924

Query: 918 GVDGKLNAVPVTDPNSS-----THSLGIPSSCTSDT------ECEVCQ 954
           G  G+LNAV   + ++S          + ++CT         ECE CQ
Sbjct: 925 G--GELNAVSAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEECEACQ 970


>gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
 gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
          Length = 1001

 Score = 1019 bits (2634), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/927 (59%), Positives = 689/927 (74%), Gaps = 25/927 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 TQARG---HDEQVAGSTPGLTVT-DNGVSRPLDMAALRGIIESACANLGDAVSAEPIVAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K+ A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKVPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLA+ R   + ++ +  + W EL++R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRQRIATYGMRNSNCIAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNA 925
           TTYYLR+ +AT VEKST+    G LNA
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNA 929


>gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           parapertussis 12822]
 gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica RB50]
 gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           parapertussis]
 gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica RB50]
          Length = 975

 Score = 1018 bits (2633), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/979 (55%), Positives = 700/979 (71%), Gaps = 39/979 (3%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P+       E +      P   +     +I+RNG V  F+PSKI+ A+ KAF+AV G  
Sbjct: 10  RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V+ L+++  +    HIED+QDQVE +LM+SG H + R YVLY
Sbjct: 66  GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125

Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           RE R+  RAA       S   A   P L ++ D+G     +   L   +E A  GL Q  
Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
            ++ +L ET KN+YDG+   ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL   
Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++ +  +M   Y EYF  +I+ G++  LL   + ++DL  +A  L   RD  F YL
Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP
Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G
Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT
Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+
Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E
Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598

Query: 597 TAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            AVCNLGS+NL+AH         + D+DKL  TI  A+R+LDNVIDIN + ++KA+ SN 
Sbjct: 599 IAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+MGFQ  LH++ +PYAS +A++ AD SME + +HA  AS ELAQERG Y S+
Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718

Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +GSLW +G+ P D++ +L E R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTA
Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS
Sbjct: 779 TISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+
Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941
            AW  GLKTTYYLR+  ATS EKST +G  G+LNAV   D  + +     P         
Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956

Query: 942 SSCTSDT------ECEVCQ 954
           + CT         ECE CQ
Sbjct: 957 AVCTMRPGDPGFEECEACQ 975


>gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           metallidurans CH34]
 gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           metallidurans CH34]
          Length = 979

 Score = 1018 bits (2633), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/952 (58%), Positives = 695/952 (73%), Gaps = 32/952 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +    HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA  +           + 
Sbjct: 96  RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155

Query: 147 I-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             + D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I 
Sbjct: 156 FNVTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAIL 215

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G+
Sbjct: 216 AARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGI 269

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL E +  +DL  L   L   RDF F YLGLQ LYDRYFLH++  RIEMPQAFFMRV
Sbjct: 270 EAELLDEKLATYDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMRV 329

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL+E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 330 AMGLALEEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 389

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 390 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 449

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP
Sbjct: 450 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSP 509

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFK
Sbjct: 510 ASCPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITFK 569

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYD 619
           DPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+ 
Sbjct: 570 DPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDHA 629

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  A
Sbjct: 630 KLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAA 689

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAM 738
           V+ AD SME + ++A  AS ELA+ERG YS+++GSLWD+G+ P DS+ LLAE R   L +
Sbjct: 690 VKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLDV 749

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + +S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+
Sbjct: 750 DLSSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 809

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTVVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E
Sbjct: 810 FTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVE 869

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST++ 
Sbjct: 870 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQ- 928

Query: 919 VDGKLNAVPVTDPNSS----------THSLGIPSSCTSDT------ECEVCQ 954
             G LNAV       S                 + CT         ECE CQ
Sbjct: 929 -RGSLNAVSSGADGQSGIDAAASAAPAMPEAEGAVCTMRPGDPGFEECEACQ 979


>gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
 gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
          Length = 944

 Score = 1018 bits (2632), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/955 (58%), Positives = 695/955 (72%), Gaps = 31/955 (3%)

Query: 14  AFPSLAYPFPEKIKG-----VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           A  SL+    +K         +V++RNG V  F+P+KIS A+ KAF+AV G  A+ S RV
Sbjct: 7   APTSLSSAAGDKEANSSFDLYKVVRRNGSVVVFEPAKISVALTKAFIAVSGGPAAASARV 66

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           ++++  LT+  V  L++       +HIEDIQDQVE  LM+SG H + R YVLYREE S  
Sbjct: 67  RELVDQLTQGVVIALMRRQPHGGTLHIEDIQDQVELGLMRSGEHDVARAYVLYREEHSRS 126

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYK 187
           R AQ+  +  A +   + +   DG +   +  RL ++V+ AC GL + V +++VL    K
Sbjct: 127 R-AQTQVQQPAHV---INVTGKDGVVQPLDLARLSVLVQSACEGLGEVVDAELVLQVALK 182

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +MYDG+   ++   LI S+R++IEKEP Y  VTAR LL  +  EVL       +     +
Sbjct: 183 DMYDGVPLHEVHKCLILSARSMIEKEPAYNFVTARLLLNNICSEVLG------EDVAPAD 236

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M   Y +YF ++I+ G+ A LL E +  FDL  LA +L   RD  F YLGLQ LYDRYFL
Sbjct: 237 MATRYADYFPKFIKRGIAAELLDEKLAGFDLPRLAAELDASRDLQFGYLGLQTLYDRYFL 296

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           HI G+RIE PQ FFMRVAMGLAL E ++E RA+EFY LLS F FMCSTPTLFNSG+R  Q
Sbjct: 297 HIGGTRIEAPQVFFMRVAMGLALNEIDREARAIEFYRLLSGFDFMCSTPTLFNSGSRRSQ 356

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+L+TV D+L GI+ A+++NA+LAK++GGLGNDWTPVR LGAHI GTNG+SQGV+PF
Sbjct: 357 LSSCYLSTVEDNLEGIYDAIKDNALLAKFAGGLGNDWTPVRALGAHIKGTNGESQGVVPF 416

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT+NWIPD
Sbjct: 417 LKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTSNWIPD 476

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +V DLHDL+G +FEIAY  YE +A  G+IK+++ + A +LWR
Sbjct: 477 LFMKRVMEGGNWTLFSPSDVKDLHDLFGIDFEIAYTAYEEKAAAGQIKLYKTVQAASLWR 536

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL
Sbjct: 537 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNADEIAVCNLGSVNL 596

Query: 608 LAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            AH          Q D+ KL  TI TA+R+LDNVIDIN + + KA+ SN  HR +G+G+M
Sbjct: 597 PAHLYPEGHDLAGQIDHAKLRRTINTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIM 656

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ  LH L +PY+S EAVE AD SME + ++A  AS ELA+ERG Y+S+KGSLWD G+ 
Sbjct: 657 GFQDCLHQLRLPYSSMEAVEFADRSMEAVCYYAYWASTELAEERGRYASYKGSLWDCGIL 716

Query: 722 PIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           P D++ LL E R   + ++ +  + WD L+ R+   GMRNSNC+AIAPTATI+NI GVS 
Sbjct: 717 PQDTLDLLREERGGYVEVDTSVSMDWDALRARIGQYGMRNSNCVAIAPTATISNIIGVSA 776

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P+YQNL+VKSN+SG+FTV+N  LV ELK+  LWDE MISDLKY DGS+  I+RIP +
Sbjct: 777 CIEPTYQNLFVKSNLSGEFTVINDHLVAELKRLGLWDEVMISDLKYFDGSLAKIDRIPAE 836

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           L+ ++ATAFE++P WLIE+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AW+ GLKTT
Sbjct: 837 LRSLYATAFEVEPSWLIEAASRRQKWIDQAQSLNIYMAGVSGRKLDDTYKLAWVRGLKTT 896

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           YYLR+  ATS EKST  G  G LNAV V D  + T        C+ D  ECE CQ
Sbjct: 897 YYLRTLGATSAEKST--GRAGALNAVSVGDAPAETTQF-----CSIDNPECEACQ 944


>gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha
           [Verminephrobacter eiseniae EF01-2]
 gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 968

 Score = 1018 bits (2632), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/966 (55%), Positives = 685/966 (70%), Gaps = 34/966 (3%)

Query: 10  GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
            D  A P  A      ++  Q+++RNG V  F P KI+ A+MKAF+AV G   + S  V+
Sbjct: 16  ADVQAKP--AAAPDHALEHYQIMRRNGAVVPFQPQKIALAMMKAFLAVHGTQGAASASVR 73

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +++  LT+     L++        HIED+QDQVE  LM+ GHH+I R YVLYRE R+  R
Sbjct: 74  EVVDGLTQTVTRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARSYVLYRERRTQER 133

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKN 188
           + Q   +  A     L  ++D G  ++ +  RL+ ++E AC GL  DV +  +++ET +N
Sbjct: 134 SRQGSPQQPAA---ALLHVLDAGVRVALDPARLQALIESACVGLGPDVKADPIVAETMRN 190

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+   ++  A I ++RTLIEK+P+Y+  TAR LL  + REVL +   + Q      M
Sbjct: 191 LYDGVPMDEVCKAAILAARTLIEKDPDYSYATARLLLHTIVREVLGSDVPQAQ------M 244

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y +YF R+I++GV   LL E ++ +DL  L   ++ ERD  F+YLGLQ LYDRYFLH
Sbjct: 245 ALAYGDYFPRFIKKGVDNGLLDERLLQYDLQRLGAAIRAERDLKFDYLGLQTLYDRYFLH 304

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +  +RIE+PQ FFMRVAMGLAL E E+E RA+EFY +LSSF FM STPTLFNSGT   QL
Sbjct: 305 VRKTRIELPQVFFMRVAMGLALNEVEREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQL 364

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG++I GTNG+SQGV+PFL
Sbjct: 365 SSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSYIAGTNGESQGVVPFL 424

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 425 KVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDL 484

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM RV +   WTLFSP  V DLH+L+G +FE AY  YE QA RG I   R + A  LWRK
Sbjct: 485 FMHRVMEKGHWTLFSPSSVPDLHELFGADFEKAYVAYEEQAARGAIGPARTVQATDLWRK 544

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL
Sbjct: 545 MLTMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSDSETAVCNLGSVNLL 604

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            H  + Q D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+M FQ  L+
Sbjct: 605 QHLKDGQIDHDKLRQTITVAMRMLDNVIDINYYAVRKARDSNLRHRPVGLGVMAFQDCLY 664

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L IPYAS  AVE AD+SME I ++A  AS ELA+ERG Y S++GSLW++G  P+D++ L
Sbjct: 665 ELRIPYASQAAVEFADQSMEAICYYAYWASTELAKERGKYLSYEGSLWERGQLPLDTLDL 724

Query: 729 LAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           LA+ R + L ++R+SRL WD L++++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ 
Sbjct: 725 LAQARGDYLQVDRSSRLDWDALRQKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSFG 784

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NL VKSN+SG+FTV+N+ LV +LK+  LWDE MI DLK+  GS+  I+R+P D+K +++T
Sbjct: 785 NLSVKSNLSGEFTVINAGLVRDLKRLGLWDEVMIMDLKHFKGSLHPIDRVPQDIKALYST 844

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AW+ GLKTTYYLR++S
Sbjct: 845 AFEVDPQWLVEAASRRQKWIDQAQSLNIYMAGASGRKLDETYKLAWVRGLKTTYYLRTQS 904

Query: 908 ATSVEKSTLKGVDGKLNAVP-------------------VTDPNSSTHSLGIPSSCTSDT 948
           AT VE ST+    G+LNAV                             +  I      + 
Sbjct: 905 ATHVEMSTVN--TGQLNAVSSGPHGDAFGAAATSTPMSTAAAQAGDRPATDIAFCALDNP 962

Query: 949 ECEVCQ 954
            CE CQ
Sbjct: 963 TCEACQ 968


>gi|296160507|ref|ZP_06843323.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
 gi|295889256|gb|EFG69058.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
          Length = 1001

 Score = 1018 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/918 (59%), Positives = 681/918 (74%), Gaps = 23/918 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQARG---HDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEKAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTL 916
           TTYYLR+ +AT VEKST+
Sbjct: 905 TTYYLRTMAATHVEKSTV 922


>gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. H160]
 gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. H160]
          Length = 1003

 Score = 1018 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/930 (59%), Positives = 690/930 (74%), Gaps = 24/930 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
             ++G +   P  +Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQSQGAQGLAPQASYA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  RA   H  ++A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 NQARAHDEH--AEAASTPGLNVT-DNGITRPLDMAALRSIIESACANLGDAVSAEPIVAE 191

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 192 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ G+ A LL + +  FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 246 QAEMGERYAEYFPQFIKRGIGAGLLDDKLQQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT 
Sbjct: 306 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNILSSFDFMSSTPTLFNSGTH 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 366 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K+ A  
Sbjct: 486 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKLPAAQ 545

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 546 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605

Query: 605 INLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG
Sbjct: 606 VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LH+L  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G
Sbjct: 666 IMGFQDCLHMLRTPYASQEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 726 ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 786 SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLK
Sbjct: 846 ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           TTYYLR+ +AT VEKST+    G LNAV  
Sbjct: 906 TTYYLRTMAATHVEKSTV--AHGALNAVSS 933


>gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           ebreus TPSY]
 gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           ebreus TPSY]
          Length = 974

 Score = 1018 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 539/972 (55%), Positives = 689/972 (70%), Gaps = 38/972 (3%)

Query: 8   NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
            +    A P+ A+P    +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  
Sbjct: 16  ARATPSATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASAS 71

Query: 68  VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
           V++++  LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+ 
Sbjct: 72  VREVVDQLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQ 131

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETY 186
            RA +       P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET 
Sbjct: 132 ERAQKKE--QLLPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETM 188

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +N+YDG+   ++  A I ++RTLIEK+P Y   TAR LL  + REVL             
Sbjct: 189 RNLYDGVPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLGRDVNPAN----- 243

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
            M   Y E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYF
Sbjct: 244 -MALAYAENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYF 302

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LH+  +RIE+PQ+FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   
Sbjct: 303 LHVRKTRIELPQSFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRS 362

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSC+LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+P
Sbjct: 363 QLSSCYLTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVP 422

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIP
Sbjct: 423 FLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIP 482

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LW
Sbjct: 483 DLFMKRVMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLW 542

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+N
Sbjct: 543 RKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVN 602

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L  H  +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ A
Sbjct: 603 LARHLKDGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDA 662

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L IPYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+
Sbjct: 663 LYELRIPYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSL 722

Query: 727 GLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LL + R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS
Sbjct: 723 QLLEQERGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPS 782

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           + NL VKSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++
Sbjct: 783 FGNLSVKSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALY 842

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+ P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+
Sbjct: 843 ATAFEVAPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRT 902

Query: 906 RSATSVEKSTL-----------KGVDGKLNAVPVTDPNSST------------HSLGIPS 942
           +SAT VE ST+               G+    P +  N++              +  +  
Sbjct: 903 QSATHVEMSTVNTRQLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAQAAAIPATDVKF 962

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 963 CAIDDPGCEACQ 974


>gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis Tohama I]
 gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           pertussis Tohama I]
 gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis CS]
          Length = 975

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/979 (55%), Positives = 700/979 (71%), Gaps = 39/979 (3%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P+       E +      P   +     +I+RNG V  F+PSKI+ A+ KAF+AV G  
Sbjct: 10  RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V+ L+++  +    HIED+QDQVE +LM+SG H + R YVLY
Sbjct: 66  GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125

Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           RE R+  RAA       S   A   P L ++ D+G     +   L   +E A  GL Q  
Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
            ++ +L ET KN+YDG+   ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL   
Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++ +  +M   Y EYF  +I+ G++  LL   + ++DL  +A  L   RD  F YL
Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP
Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G
Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT
Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+
Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E
Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598

Query: 597 TAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            AVCNLGS+NL+AH   N     + ++DKL  TI  A+R+LDNVIDIN + ++KA+ SN 
Sbjct: 599 IAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+MGFQ  LH++ +PYAS +A++ AD SME + +HA  AS ELAQERG Y S+
Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718

Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +GSLW +G+ P D++ +L E R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTA
Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+NI G S  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS
Sbjct: 779 TISNIIGASACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+
Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941
            AW  GLKTTYYLR+  ATS EKST +G  G+LNAV   D  + +     P         
Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956

Query: 942 SSCTSDT------ECEVCQ 954
           + CT         ECE CQ
Sbjct: 957 AVCTMRPGDPGFEECEACQ 975


>gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
 gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
          Length = 975

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/986 (55%), Positives = 701/986 (71%), Gaps = 43/986 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
           M  + +       A  +LA   PE    +   Q+I+RNG V  F+P KI+ A+MKAF+AV
Sbjct: 1   MQAALNTPPSHTAASQALAPNAPEASHVLNHYQIIRRNGAVVPFEPQKIAVAMMKAFLAV 60

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S  V++++  LT      L++        HIED+QDQVE  LM+SGHH+I R 
Sbjct: 61  HGTQGAASASVREVVDTLTHNVTRALMRSRPGGGTFHIEDVQDQVELGLMRSGHHEIARA 120

Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           YVLYRE R+       H++   P AP+L ++   G  +  +  RL+ ++E AC+GL  DV
Sbjct: 121 YVLYRERRTQ--ERTRHNEEQLPQAPQLHVLDG-GERVVLDQGRLQSLIESACTGLGADV 177

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S++ +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL   
Sbjct: 178 SAQPIVAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLG-- 235

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++    +M   Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YL
Sbjct: 236 ----REVAPADMAQSYVDYFPQFIKKGVENDLLDERLLQYDLQRLGAALKAERDLQFDYL 291

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STP
Sbjct: 292 GLQTLYDRYFLHVKKNRIELPQAFFMRVAMGLSLNEIDREARAIEFYEILSSFDFMSSTP 351

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI G
Sbjct: 352 TLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKG 411

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRT
Sbjct: 412 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRT 471

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK 
Sbjct: 472 HDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGTDFEKAYVAYEEKAARGEIKP 531

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  E
Sbjct: 532 ARTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTE 591

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TAVCNLGS+NLL H  N Q D+DKL  TI  A+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 592 TAVCNLGSVNLLQHLKNGQIDHDKLKKTITVAMRMLDNVIDINYYAVKKARDSNLRHRPV 651

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+M FQ +L+ L IPYAS EAVE AD+SME I ++A  AS ELA+ERG YSS+KGSLW
Sbjct: 652 GLGVMAFQDSLYELRIPYASQEAVEFADQSMEAICYYAYWASTELARERGRYSSYKGSLW 711

Query: 717 DQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P+D++ +LA+ R   + ++R++ L WD L+K++   GMRNSNC+AIAPTATI+NI
Sbjct: 712 DRGILPLDTLDMLAQARGGYVEVDRSATLDWDALRKKIAQDGMRNSNCVAIAPTATISNI 771

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GV  SI+PS+ NL VKSN+SG+FTV+N  LV +LK+  LWD+ MI DLK+  GS+  I+
Sbjct: 772 IGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRLGLWDDVMIMDLKHFKGSLHPID 831

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           R+P D+K +++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ 
Sbjct: 832 RVPQDIKALYSTAFEVEPRWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVR 891

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS------------- 942
           GLKTTYYLR++SAT VE ST+     +LNAV     N  +H+    S             
Sbjct: 892 GLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGHDNGGSHASAAQSAPPSTMEAAIAAA 949

Query: 943 --------------SCTSDTECEVCQ 954
                             D  CE CQ
Sbjct: 950 ALQAAELPATDIKFCAIDDPTCEACQ 975


>gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           xenovorans LB400]
 gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 1001

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/918 (59%), Positives = 679/918 (73%), Gaps = 23/918 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATFA------DYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQARG---HDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV  AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVRFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+   GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIAQYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTL 916
           TTYYLR+ +AT VEKST+
Sbjct: 905 TTYYLRTMAATHVEKSTV 922


>gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 974

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/968 (57%), Positives = 714/968 (73%), Gaps = 30/968 (3%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             V      +  + A     +    ++I+RNG V  F P+KI+ A+ KAF+AV+G  A+ 
Sbjct: 19  SAVPVAIPPSDAADAPAIDARYADYKIIRRNGAVVGFAPNKIAVAVTKAFIAVQGGQAAA 78

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R++++++ +T Q    LL+ N +    HIED+QDQVE +LM+SG H++ R YVLYRE+
Sbjct: 79  SARIRELVEAITSQVTAALLRRNPAGGTFHIEDVQDQVELALMRSGEHEVARAYVLYREK 138

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLS 183
           R+  RAAQ      A +      +++DG     ++ RL  ++ +ACS L + V ++ ++ 
Sbjct: 139 RAQERAAQKA----AGVPEVQLHVIEDGVRKPLDTARLAGLLADACSDLGESVKAEPIMH 194

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
              +++YDG+  +++E AL+ ++R++IE++P Y+ VTAR LL  +R EVL       +  
Sbjct: 195 TVLRDLYDGVPMAEVEKALVLAARSMIEQDPAYSLVTARLLLNSIRHEVLG------EAV 248

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           T  +M   Y EYF  +I++G+ A LL E +  FDL  LA  L   RD+ F YLGLQ LYD
Sbjct: 249 TQAQMSERYAEYFPAFIKKGIAAELLDEKLGQFDLARLARVLDAGRDYQFGYLGLQTLYD 308

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYFLHI  +RIE+PQAFFMRVAMGLA+ E ++E RA+EFY +LSSF FM STPTLFNSGT
Sbjct: 309 RYFLHIEENRIELPQAFFMRVAMGLAINEIDRESRAIEFYQVLSSFDFMSSTPTLFNSGT 368

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           RH QLSSC+LTTV DDL GI+ A++ENAML KY+GGLGNDWTPVR +GA I GTNGKSQG
Sbjct: 369 RHSQLSSCYLTTVTDDLDGIYQAIKENAMLQKYAGGLGNDWTPVRAMGARIKGTNGKSQG 428

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTAN
Sbjct: 429 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAN 488

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFM+RV +   WTLFSP++V DLHDLYG++F  AY  YER+ADRGE+K++++I A+
Sbjct: 489 WIPDLFMQRVMEGGDWTLFSPNDVPDLHDLYGRKFAEAYTEYERKADRGELKLYKRIPAL 548

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLG
Sbjct: 549 QLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDHEVAVCNLG 608

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL+ H  + + D DKL +TI TA+R+LDNV+D+N + + KA+ SN  HR +GLG+MGF
Sbjct: 609 SVNLVNHLKDGKLDLDKLKNTIHTAMRMLDNVVDVNYYAVGKARNSNLKHRPVGLGIMGF 668

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL  L + YAS +AVE AD SME ++++A  AS ELAQERG YSS++GSLW +G+ P 
Sbjct: 669 QDALQELRVAYASNDAVEFADRSMEAVAYYAYWASTELAQERGRYSSYEGSLWSKGILPH 728

Query: 724 DSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS  LL E R   L ++ ++ L WD L++R+   GMRNSNC+AIAPTATIANI GVS SI
Sbjct: 729 DSNRLLLEERGGYLEVDSSATLDWDSLRQRIAQYGMRNSNCLAIAPTATIANIVGVSASI 788

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV N +LV +LK+  +WDE M++D+KY DGS+  I+RIP +L+
Sbjct: 789 EPTYQNLYVKSNLSGEFTVANKYLVADLKKLGMWDEVMVADIKYFDGSLARIDRIPAELR 848

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYY
Sbjct: 849 ALYATAFEMEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDIYKLAWLRGLKTTYY 908

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVP------VTDPNSSTHSLGIP----SSCTSDT---- 948
           LR+  ATS EKST KG  G+LNAV       ++  +++  +L +P      CT       
Sbjct: 909 LRTLGATSAEKSTGKG--GELNAVSAHVGGGMSAMDAAAANLPVPEIEGKVCTMRPGDPG 966

Query: 949 --ECEVCQ 954
             ECE CQ
Sbjct: 967 FEECEACQ 974


>gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, alpha subunit) (Ribonucleotide
           reductase large subunit) [Thiomonas sp. 3As]
          Length = 974

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/950 (57%), Positives = 684/950 (72%), Gaps = 31/950 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
              ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V  LL+ 
Sbjct: 34  SDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRS 93

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             S    HIEDIQDQVE SLM++G H++ R YVLYRE R+  RA Q  +      AP L 
Sbjct: 94  RPSGGTFHIEDIQDQVELSLMRTGQHEVARAYVLYRERRTQERAKQKAAAEQQESAPVLH 153

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++   G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  A I +
Sbjct: 154 VLDG-GLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKAAILA 212

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           SRTLIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I+EGV+
Sbjct: 213 SRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVE 266

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMP 317
             LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYFL        + +G RIE+P
Sbjct: 267 LELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELP 326

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+LTTV 
Sbjct: 327 QAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVA 386

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVA
Sbjct: 387 DDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVA 446

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +  
Sbjct: 447 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGG 506

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+MLFETG
Sbjct: 507 DWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETG 566

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
           HPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  +    
Sbjct: 567 HPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADG 626

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L+ L I
Sbjct: 627 AKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRI 686

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQGV P+DS+ LLAE 
Sbjct: 687 PYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLKLLAEQ 746

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++QNLYV
Sbjct: 747 RGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYV 806

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK +++TAFE 
Sbjct: 807 KSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYSTAFET 866

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT  
Sbjct: 867 DTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHA 926

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-------SCTSDTECEVCQ 954
           EKST+K   G+LNAVP +   S++ S                + ECE CQ
Sbjct: 927 EKSTVKA--GQLNAVPQSPSESASASAQAVVQSGDIRYCAIDNPECEACQ 974


>gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
 gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
          Length = 969

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LTE  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q  +   A  A   P L +  D+G  +  + +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+    +        E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMGRDVQPA------E 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQTAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEKGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
 gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
          Length = 1003

 Score = 1016 bits (2627), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/928 (60%), Positives = 691/928 (74%), Gaps = 24/928 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQTQGAQSLAPQANYA------DYKVIRRNGTVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRSLLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  RA   H  +DA   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 NQARAHDDH--ADAASTPGLNVT-DNGITRPLDMAALRGIIESACANLGDAVSAEPIVAE 191

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 192 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILE------EEVT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 246 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +  RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 306 YFLHHDNVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 366 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 486 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 545

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 546 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605

Query: 605 INLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG
Sbjct: 606 VNLVAHLKEQADGTVALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LH+L  PYASPEAVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G
Sbjct: 666 IMGFQDCLHVLRTPYASPEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725

Query: 720 VFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 726 ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 786 SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLK
Sbjct: 846 ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           TTYYLR+ +AT VEKST+    G LNAV
Sbjct: 906 TTYYLRTMAATHVEKSTV--AHGALNAV 931


>gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
 gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
          Length = 969

 Score = 1016 bits (2626), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LTE  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q  +   A  A   P L +  D+G  +  + +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+    +        E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMGRDVQPA------E 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
           JS42]
 gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
           JS42]
          Length = 972

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 539/970 (55%), Positives = 686/970 (70%), Gaps = 36/970 (3%)

Query: 8   NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
            +    A P+ A+P    +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  
Sbjct: 16  ARATPSATPTGAHP----LMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASAS 71

Query: 68  VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
           V++++  LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+ 
Sbjct: 72  VREVVDQLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQ 131

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETY 186
            RA +       P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET 
Sbjct: 132 ERAQKKE--QLLPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETM 188

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +N+YDG+   ++  A I ++RTLIEK+P Y   TAR LL  + REVL             
Sbjct: 189 RNLYDGVPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLGRDVNPA------ 242

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           +M   Y E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYF
Sbjct: 243 DMALAYAENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYF 302

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LH+  +RIE+PQ FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   
Sbjct: 303 LHVRKTRIELPQTFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRS 362

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSC+LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+P
Sbjct: 363 QLSSCYLTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVP 422

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIP
Sbjct: 423 FLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIP 482

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LW
Sbjct: 483 DLFMKRVMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLW 542

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+N
Sbjct: 543 RKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVN 602

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L  H  +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ A
Sbjct: 603 LARHLKDGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDA 662

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L IPYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+
Sbjct: 663 LYELRIPYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSL 722

Query: 727 GLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LL + R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS
Sbjct: 723 QLLEQERGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPS 782

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           + NL VKSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++
Sbjct: 783 FGNLSVKSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALY 842

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+ P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+
Sbjct: 843 ATAFEVAPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRT 902

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG---------------------IPSSC 944
           +SAT VE ST+        A   +D    T +                       +    
Sbjct: 903 QSATHVEMSTVNTRQLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAAAIPATDVKFCA 962

Query: 945 TSDTECEVCQ 954
             D  CE CQ
Sbjct: 963 IDDPGCEACQ 972


>gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia
           acidovorans SPH-1]
 gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia
           acidovorans SPH-1]
          Length = 973

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/977 (54%), Positives = 691/977 (70%), Gaps = 31/977 (3%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           ++       GD  A PS A+    +  G Q+I+R+G V  F P KI+ A+ KAF+AV G 
Sbjct: 5   LNSLAPAAHGD-AANPSSAHHLSVQ-DGYQIIRRSGDVVPFTPQKIAVALTKAFLAVRGA 62

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S  V++ +  LT+  V  LL+        HIED+QDQVE  LM+ GHH + R YVL
Sbjct: 63  QGAASASVRETVDELTQAVVRALLRSRPGGGTFHIEDVQDQVELGLMRGGHHDVARAYVL 122

Query: 121 YREERSDVRAAQSHSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-D 175
           YR+ R+  RA Q  +   A  A      +  + D+G  +  +  RL  ++E +C  L  D
Sbjct: 123 YRDRRNQERAEQKKAAEAAAAAAAAPAPVLHVTDNGQRVPLDQARLLALIEASCRNLNAD 182

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           + +  +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y  VTAR LL  + REV+  
Sbjct: 183 IQAAPIVAETLRNLYDGVPIEEVFKASILAARTLIEKDPDYTYVTARLLLHTIVREVMGR 242

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
             +        ++Q  Y EYF  +I +GV   LL+  ++++DL  LA  +K ERD  F+Y
Sbjct: 243 DVQPA------DIQAAYAEYFPGFIRKGVDNELLNPELLNYDLPRLAAAIKAERDEQFDY 296

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGLQ LYDRYFLH+  +RIE+PQ+FFMRVAMGLAL+E ++  RA+EFY LLSSF FM ST
Sbjct: 297 LGLQTLYDRYFLHVRKTRIELPQSFFMRVAMGLALQEEDRNARAIEFYELLSSFDFMSST 356

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I 
Sbjct: 357 PTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIK 416

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRR
Sbjct: 417 GTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRR 476

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           THDMNTANWIPDLFMKRV +   WTLFSP +V DLHDL+G  FE AY  YE +AD GE+K
Sbjct: 477 THDMNTANWIPDLFMKRVMEKGHWTLFSPSDVGDLHDLFGAAFEHAYTAYETKADNGELK 536

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           +F++I A+ LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S  
Sbjct: 537 LFKRIPAMDLWRKMLSMLFETGHPWVTFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDT 596

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           ETAVCNLGS+NL  H  +   D+ KL  TI TA+R+LDNVIDIN + ++KAK SN  HR 
Sbjct: 597 ETAVCNLGSVNLARHIVDGAIDHGKLRKTITTAMRMLDNVIDINYYAVQKAKDSNLRHRP 656

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLGLMGFQ AL+ + I YAS  AVE AD+SME I ++A  AS ELA+ERG YSS+KGSL
Sbjct: 657 VGLGLMGFQDALYEMRIAYASDAAVEFADQSMEAICYYAYWASTELAKERGQYSSYKGSL 716

Query: 716 WDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WDQG+ P+D++ LL + R   + ++R+SRL WD L+ ++   GMRNSNC+AIAPTATI+N
Sbjct: 717 WDQGILPLDTLNLLEKARGGYVEVDRSSRLDWDALRAKIGQHGMRNSNCVAIAPTATISN 776

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I
Sbjct: 777 IVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRPI 836

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P D+K ++ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL
Sbjct: 837 DRVPQDVKSLYATAFEVEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWL 896

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV-----------------DGKLNAVPVTDPNSSTHS 937
            GLKTTYYLR+ SAT++EKST++                                +   +
Sbjct: 897 RGLKTTYYLRTTSATNIEKSTVQSRVLNAVPSAAAAQPAAVNTSSALEAAAAAARAQAPA 956

Query: 938 LGIPSSCTSDTECEVCQ 954
             I      D  CE CQ
Sbjct: 957 TDIKFCAIDDPGCEACQ 973


>gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
 gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
          Length = 969

 Score = 1015 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/968 (54%), Positives = 684/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LT+  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTDGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAP---IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q      A      P L +  D+G  +  N +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKVAEVAAAAATKPVLHVT-DNGQRVPLNQERLEALIVASCGNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+    +        E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMGRDVQPA------E 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAKDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
           denitrificans K601]
 gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 970

 Score = 1015 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/979 (54%), Positives = 683/979 (69%), Gaps = 39/979 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEK------IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
              V+     +    A   P            Q+I+RNG V  F+P KI+ A+MKAF+AV
Sbjct: 3   VSSVHANTAPSTQPHAADAPATDASGGVFSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAV 62

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S  V++++  LT+  V  L++   S    HIED+QDQVE  LM+  HH++ R 
Sbjct: 63  HGTQGAASASVREVVDELTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGSHHEVARA 122

Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           YVLYRE R+  RA +       P  P L ++   G  I  +  RL+ ++E AC+ L  DV
Sbjct: 123 YVLYRERRAQERAQKKE--QLLPQMPALYVLDK-GQRIELDILRLQALIESACANLGSDV 179

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
            +  + +ET +N+YDG+   ++  A I ++RTLIEK+P Y   TAR LL  + REVL   
Sbjct: 180 QAAPIAAETLRNLYDGVPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLGQD 239

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
                 A  +         F ++I +GV   LL   ++DFDL  L   LK  RD  F+YL
Sbjct: 240 VAPAGMAAAYAAN------FPQFIRKGVDNELLDPRLLDFDLQRLGQALKAGRDLQFDYL 293

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHFM 352
           GLQ LYDRYFLH+  +RIE+PQAFFMRVAMGLAL+E + +     RA+EFY LLSSF FM
Sbjct: 294 GLQTLYDRYFLHVKKTRIELPQAFFMRVAMGLALREGDPKTTGSARAIEFYELLSSFDFM 353

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STPTLFNSGT   QLSSC+LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA
Sbjct: 354 SSTPTLFNSGTLRSQLSSCYLTTVPDELGGIYESIKENALLSKFAGGLGNDWTRVRALGA 413

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+DVEEFL+LRKNTGDD
Sbjct: 414 RIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDVEEFLELRKNTGDD 473

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           RRRTHDMNTANWIPDLFMKRV     WTLFSP +V DLHDLYG+ FE AY  YE + D G
Sbjct: 474 RRRTHDMNTANWIPDLFMKRVMDKGQWTLFSPSDVPDLHDLYGQAFERAYTAYEAKVDSG 533

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+++F+++ AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+
Sbjct: 534 ELQLFKRVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNT 593

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           S  ETAVCNLGS+NL  H  +   D+DKL  T+ TA+R+LDNVIDIN + ++KA+ SN  
Sbjct: 594 SDTETAVCNLGSVNLARHLKDGAIDHDKLRKTVSTAMRMLDNVIDINYYAVDKARDSNLR 653

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR +GLGLMGFQ AL+ L IPY+S  AV  ADESME I ++A  AS ELA+ERG YSS++
Sbjct: 654 HRPVGLGLMGFQDALYELRIPYSSDAAVTFADESMEAICYYAYWASTELARERGTYSSYE 713

Query: 713 GSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           GSLW +G+ P+DS+ LLA+ R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTAT
Sbjct: 714 GSLWSKGILPLDSLELLAKERGGYVEVDRTTRLDWDALRSKITQDGMRNSNCIAIAPTAT 773

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+NI GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+
Sbjct: 774 ISNIVGVDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKKLGLWDDVMLMDLKHFKGSL 833

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             I+R+P ++K ++ATAFE+ P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ 
Sbjct: 834 HAIDRVPQNVKALYATAFEVAPAWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKL 893

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------------T 935
           AW+ GLKTTYYLR++SAT VE ST+     +LNAV     + S                 
Sbjct: 894 AWVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSAGTDSQSGALNAAAAAAQTQAGAL 951

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  +      D  CE CQ
Sbjct: 952 PATDVKFCAIDDPSCEACQ 970


>gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii SDF]
 gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii]
          Length = 943

 Score = 1014 bits (2622), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/947 (55%), Positives = 682/947 (72%), Gaps = 35/947 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       +++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARK-----DTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR     LR E+++T                       ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARL----LRDELVSTGL----AFLGLPADTAENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVKFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N  L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPCL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG------VD 920
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKP 896

Query: 921 GKLNAVPVTDP------------NSSTHSLGIPSSCTSD-TECEVCQ 954
             + A P   P            +  T +  +P +C+ D  +CE CQ
Sbjct: 897 ATVEAAPAVAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9]
 gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9]
          Length = 917

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/926 (58%), Positives = 676/926 (73%), Gaps = 23/926 (2%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           I+R G V  F+  KI+ A+ KAF+AV+G+ A +S R++D +  LT+  V  L        
Sbjct: 12  IRRTGDVVPFNADKIALAMRKAFIAVQGESAGQSSRLRDEVARLTQDVVNALTGRRPEGS 71

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            + IEDIQDQVE +LM+SG H++ R YVLYRE R+       H+       P L +   D
Sbjct: 72  AIAIEDIQDQVELALMRSGEHEVARAYVLYREARAAE-RRARHAALGIDQLPALHVTRPD 130

Query: 152 GTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           G+    + +RL   +E AC GL+ D     +L++T KN+YDG++E+++E ALI S+R  I
Sbjct: 131 GSRAPLDIERLGRQLEAACHGLEADTRPAALLADTLKNLYDGVTEAEVERALILSARQWI 190

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E++P Y KVTAR LL+ +RREV   V               Y E F + I+ G++A LL 
Sbjct: 191 ERDPAYDKVTARLLLDTIRREVAGGV------------AATYAEVFQQGIQRGMQADLLD 238

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             + DFDL  LA  L  ERD  F YLGLQ LYDRYFLH++G RIEMPQ FFMRVAMGLAL
Sbjct: 239 PRLADFDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLAL 298

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E +   +A+EFY+LLS F FM STPTLFN+GTRH QLSSC+LTT+ D L GIF A++EN
Sbjct: 299 NEADPTTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKEN 358

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAVCA
Sbjct: 359 AQLSKFAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 418

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +NA WTLFSP +V DL
Sbjct: 419 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDL 478

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HDL G+ F   Y  YE  A    ++  + + AV LWRKMLTMLFETGHPW+T+KD CN+R
Sbjct: 479 HDLTGRAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLR 538

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQQHVG VHSSNLCTEITLN+S +E AVCNLGS+NL  H      D +KLA T+R A+R
Sbjct: 539 SPQQHVGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMR 598

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + +EKA+ +N  HR +GLG+MGFQ  LHLL +PY S  AV  ADESME I
Sbjct: 599 MLDNVIDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELI 658

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDEL 749
           ++HA  AS ELA+ RG Y SF+GSLW QG+ P DS+ LLA  R   L ++R+SRL W  +
Sbjct: 659 AYHAYLASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAERQGYLEVDRSSRLDWTPV 718

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++R+   GMRNSNC+AIAPTATIANI GVS SI+P+Y+NL+VKSN+SG+FTVVN FLV +
Sbjct: 719 RERIARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQD 778

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+  LWD  M++DLKY DG +  IERIP D+K ++ATAF++DP WL+E+ASRRQKWIDQ
Sbjct: 779 LKRLGLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQ 838

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           AQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G  G+LNAVP+ 
Sbjct: 839 AQSLNLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVPI- 895

Query: 930 DPNSSTHSLGIPSSCTSD-TECEVCQ 954
                   +  P  C+ D  +CE CQ
Sbjct: 896 ----EGGMVAEPKFCSIDNPDCEACQ 917


>gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AYE]
 gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|213156531|ref|YP_002318192.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
 gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB056]
 gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB058]
 gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB059]
 gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
 gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AYE]
 gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii
           ACICU]
 gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2]
 gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
          Length = 944

 Score = 1013 bits (2619), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/950 (56%), Positives = 684/950 (72%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       +++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARK-----DTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR     LR E+++T                       ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARL----LRDELVSTGL----AFLGLPADTAENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                   + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944


>gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris
           marina MBIC11017]
 gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris
           marina MBIC11017]
          Length = 960

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/957 (56%), Positives = 687/957 (71%), Gaps = 29/957 (3%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P             +VI+RNG V  F+  KI+ A+ KAF+AV+G  +  S RV++++  
Sbjct: 16  PPIQGGSVEGLDAEYKVIRRNGSVVGFEADKIAIAMTKAFLAVKGVQSGVSARVRELVAT 75

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT   VT L +   +    HIEDIQDQVE +LM+SG H + R YVLYRE+RS  R  Q H
Sbjct: 76  LTTNVVTALKRRQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRSQKRTQQ-H 134

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGL 193
               API      +MD G  +  + +R   +V+ AC  L D VS K +  E  KN+YDG 
Sbjct: 135 GIEAAPIY-----LMDGGDRVLLDLERFNDLVDSACINLGDTVSGKAIADEALKNIYDGA 189

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S  +L  + I ++R+ IEK+P+Y+KVTAR LL ++R+EVL        + T  EMQ  Y 
Sbjct: 190 SVVELHKSAILAARSHIEKDPDYSKVTARLLLHRIRQEVLGA------EVTQAEMQARYA 243

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           EYF  +I++G+   LL E +  F+L  L + L  ERD  F YLGLQ LYDRYFLH    R
Sbjct: 244 EYFPHFIQQGIATGLLDEKLAQFNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDRR 303

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           IE+PQAFFMRVAMGLAL E ++E+RA EFY++LS F FM STPTLFNSGT   QLSSC+L
Sbjct: 304 IELPQAFFMRVAMGLALNEIDREERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCYL 363

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           TTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV ND
Sbjct: 364 TTVPDALDGIYSAIKDNALLSKYAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVND 423

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD+NTANWIPDLFMKRV
Sbjct: 424 TAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKRV 483

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  WTLFSPD V DLHD  GKEFE AY  YE+QA +GE+K F+ + A  LWRKML+ML
Sbjct: 484 MEDGDWTLFSPDIVPDLHDKVGKEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSML 543

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           FETGHPWITFKDPCN+RSPQQH+G+VHSSNLCTE+TLN++  E AVCNLGS+NL+ H   
Sbjct: 544 FETGHPWITFKDPCNVRSPQQHIGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMVE 603

Query: 614 N----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                Q D  KL  TI  A+R+LDNVID+N + +  A+ SN  HR +GLG+MGFQ  LH 
Sbjct: 604 KNGQMQLDQAKLQHTITIAMRMLDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLHQ 663

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +PYAS +AV+ AD +ME + ++A  AS ELAQERG YS++KGSLWD+G+ P D++ LL
Sbjct: 664 LRLPYASQDAVDFADRAMEAVCYYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLALL 723

Query: 730 AEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            EVR     ++ +S + WD L+ R+   GMRNSNC+AIAPTATIANI GVS  I+P+YQN
Sbjct: 724 KEVRGGFVEVDESSTMDWDLLRDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQN 783

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSN+SG+FTVVN +LV +LK R+LWDE MI+DLKY DGS+  I+RIP +L++++ATA
Sbjct: 784 LYVKSNLSGEFTVVNEYLVRDLKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYATA 843

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FE++P W++E+A+RR KWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLRS  A
Sbjct: 844 FEVEPNWIVEAAARRSKWIDQAQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLGA 903

Query: 909 TSVEKST-----LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           T VEKST     L  V    ++  + +  +++ S  +   C+         +CE CQ
Sbjct: 904 THVEKSTAPASSLNAVSNNGSSNGIGNILTTSKSENLGQVCSLSPGDANFDDCEACQ 960


>gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
 gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
          Length = 978

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/954 (57%), Positives = 684/954 (71%), Gaps = 35/954 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
              ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V  LL+ 
Sbjct: 34  SDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVRALLRS 93

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             S    HIEDIQDQVE SLM++G H++TR YVLYRE R+  RA Q  +      AP L 
Sbjct: 94  RPSGGTFHIEDIQDQVELSLMRTGQHEVTRAYVLYRERRTQERAKQKAAAEQQESAPVLH 153

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++   G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  A I +
Sbjct: 154 VLDG-GLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYKASILA 212

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           SRTLIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I+EGV+
Sbjct: 213 SRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCIKEGVE 266

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--------HINGSRIEMP 317
             LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYFL        + +G RIE+P
Sbjct: 267 LELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGRRIELP 326

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+LTTV 
Sbjct: 327 QAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCYLTTVA 386

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVA
Sbjct: 387 DDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVA 446

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +  
Sbjct: 447 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVMEGG 506

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+MLFETG
Sbjct: 507 EWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSMLFETG 566

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
           HPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  +    
Sbjct: 567 HPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKDAADG 626

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L+ L I
Sbjct: 627 AKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCLYQLRI 686

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQG+ P+DS+ LLAE 
Sbjct: 687 PYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLKLLAEQ 746

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++QNLYV
Sbjct: 747 RGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTFQNLYV 806

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK ++ATAFE 
Sbjct: 807 KSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYATAFET 866

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT  
Sbjct: 867 DTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTIGATHA 926

Query: 912 EKSTLKGVDGKLNAVPVTDPNSS-----------THSLGIPSSCTSDTECEVCQ 954
           EKST+K   G+LNAVP +   S              S  I      + ECE CQ
Sbjct: 927 EKSTVKA--GQLNAVPQSPSESVSALASASAQAVVQSGDIRYCAIDNPECEACQ 978


>gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           sp. 301]
 gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           sp. 301]
          Length = 938

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/950 (59%), Positives = 698/950 (73%), Gaps = 20/950 (2%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           +D  PS+       +  +QVI+RNG    F   KIS AI KAF+AVEG  +  S RV+D 
Sbjct: 2   DDVRPSVNTDLS--LPTLQVIRRNGAAVQFTLDKISIAITKAFLAVEGNQSGASQRVRDQ 59

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  L++     L++   +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  RAA
Sbjct: 60  VATLSQLVNNALMRRLPAGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAA 119

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMY 190
           +  S     ++  L + + DG LI  + K+L  +V EAC  L DV +  IV+ +  +++Y
Sbjct: 120 EKASHPTTELSHTLNVNI-DGKLIPLDIKQLNEMVGEACLNLGDVVNPSIVVEQAVRDLY 178

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG+  +++  ALI S+R+LIE EP Y  VTAR  L+ +R EVL       ++ +H +M  
Sbjct: 179 DGIPFTEVYKALILSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAQMDE 232

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            Y EYF RYI+ G+ A LL   +  FDL  LA  L  +RDF F YLG+Q LYDRYFLHI 
Sbjct: 233 HYAEYFPRYIKMGINAELLDSRLAQFDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIE 292

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             RIE+PQ FFMRVAMGLA+ E ++E RA+EFYN+LSSF FM STPTLFN+GT H QLSS
Sbjct: 293 ERRIELPQIFFMRVAMGLAINEIDRESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSS 352

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL GI+  ++ENAML KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV
Sbjct: 353 CYLTTVSDDLDGIYQGIKENAMLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKV 412

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM
Sbjct: 413 VNDTAVAVNQGGKRKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFM 472

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RVT+   WTLFSP +V DLHD YGK FE AY  YER+A+ GEIK+F+KI A+ +WRKML
Sbjct: 473 RRVTEAGDWTLFSPSDVPDLHDKYGKAFETAYVEYERRAENGEIKLFKKIPALQMWRKML 532

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           +MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL H
Sbjct: 533 SMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQH 592

Query: 611 FANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            A        D DKL +TI+  +R+LDNV+DIN + + KA+ +N  HR +G+G+MGFQ+ 
Sbjct: 593 LAEVNGKLVLDNDKLQATIKIGMRMLDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNC 652

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           LH + IPYAS EAVE AD +ME + ++A  AS  LA+ER AYSSFKGSLWDQG+ P+D++
Sbjct: 653 LHAMRIPYASMEAVEFADRAMEMVCYNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTL 712

Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LL   R   + ++R+  L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P 
Sbjct: 713 DLLLNERGGNVEVDRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPE 772

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           YQNLYVKSN+SG+FT+VN  LV +LK R LWD  M+SDLKY DGS+  I+R+P DLK+++
Sbjct: 773 YQNLYVKSNLSGEFTIVNEQLVIDLKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLY 832

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAF++DP WLIE+A+RRQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYLRS
Sbjct: 833 ATAFDVDPTWLIEAAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRS 892

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
             AT+ EKST  G  G+LNAV      +    L  P  C+ D  ECE CQ
Sbjct: 893 MGATAAEKST--GSGGELNAVSAGLEEAPKEYL--PKVCSIDNPECESCQ 938


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/930 (57%), Positives = 681/930 (73%), Gaps = 13/930 (1%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
             P             Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ + 
Sbjct: 35  PVPGSESTVTNAFAQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVD 94

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+Q +  L++        HIED+QDQVE  LM+ GHH+I R YVLYRE R+  RA Q 
Sbjct: 95  GLTQQVIRALVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERAKQ- 153

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
              ++AP AP + ++ D+G  +  +  +L+  +E ACSGL  DV +  +L+ET +N+YDG
Sbjct: 154 -VATEAPAAPVIHVI-DNGQRVPLDLAQLQFRIETACSGLGADVKAAPILAETMRNLYDG 211

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   ++  A I ++RTLIEK+P+Y   TAR L   + REVL       +     +MQ  Y
Sbjct: 212 VPLDEVYKAAILAARTLIEKDPDYTYATARLLFHTISREVLG------RDVAQADMQEAY 265

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  +I+ G+ A LL E +  FDL  L + LK  RD  F+YLGLQ LYDRYFLH   +
Sbjct: 266 ADYFPGFIKRGIAAELLDEKLQQFDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKT 325

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+
Sbjct: 326 RIELPQAFFMRVAMGLSLNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCY 385

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV N
Sbjct: 386 LTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVN 445

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+R
Sbjct: 446 DTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRR 505

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP  V DLHDL+G EFE AY  YE +A RGEIK  R + A  LWRKMLTM
Sbjct: 506 VMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTM 565

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  
Sbjct: 566 LFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLK 625

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +   D++KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM FQ +L+ L I
Sbjct: 626 DGALDHNKLKRTISTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRI 685

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AVE AD+SME IS++A  AS +LA+ERG Y S+KGSLWD+GV P D++ +LA  
Sbjct: 686 PYASDAAVEFADQSMEAISYYAYWASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANA 745

Query: 733 RDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R+S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P + NL V
Sbjct: 746 RGGYVEVDRSSTLDWNALRNKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSV 805

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+NS+LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K+++ATAFE+
Sbjct: 806 KSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEV 865

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +  WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ SAT  
Sbjct: 866 ETRWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHA 925

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           EKST+    G+LNAV   +    +  +   
Sbjct: 926 EKSTV--TAGRLNAVSSGNDAQGSTKMSSA 953


>gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
 gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
          Length = 950

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/958 (59%), Positives = 706/958 (73%), Gaps = 26/958 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P+   P       V+V++R+G V++FD +K+S A+ KAF+AVEG GA  S R+  +++ 
Sbjct: 1   MPTTTTPAAVAKAPVRVVRRDGAVSAFDATKVSVAMTKAFLAVEGDGAVASSRLHPLVEE 60

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT Q    LL+H +  + +H+E IQDQVE  LM+ GHH + R YVLYREER+ VRAA + 
Sbjct: 61  LTGQVEAALLKHVRPDVALHVEQIQDQVELVLMRGGHHAVARAYVLYREERAKVRAATAS 120

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +       +++   DG +   +  R+  +V EAC+GL DVS+  VL+ET +N+YDG++
Sbjct: 121 APAPT-----IRVTHPDGQVTPLDWDRVAAVVAEACAGLTDVSADTVLAETRRNLYDGIT 175

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +L TA I ++RTL+E EP+Y+  +AR LL+KLRRE L+ V  +P +AT  +M   Y +
Sbjct: 176 VDELATAQIMAARTLVETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMS--YVD 233

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  Y+E GV    L   +  FDL  LA  ++ ERD AF++LG+Q LYDRYFLH +G R 
Sbjct: 234 YFPAYVELGVSVDRLDPELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRY 293

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT  PQLSSCFLT
Sbjct: 294 ELPQAFFMRVAMGLALREDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLT 353

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL  IF   + NA+LAKYSGGLGNDWTPVRG+GAHI GTNG+SQGV+PFLK+ANDT
Sbjct: 354 TVDDDLDAIFRGYRNNALLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDT 413

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGA CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV 
Sbjct: 414 AVAVNQGGKRKGAACAYLETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVE 473

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +A WTLFSPDE  DLH+LYG  F   Y  YE  ADRGEI+V R++ AV LWR+MLT+LF
Sbjct: 474 ADAEWTLFSPDETPDLHELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLF 533

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H    
Sbjct: 534 ETGHPWITFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPT 593

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D D+LA T RTAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGF  +L +  IPY
Sbjct: 594 GLDRDRLARTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPY 653

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733
           AS EAVE AD SME ISFHA+ AS +LA ERG+Y SF+GSLW +GV PIDSI LLA+ R 
Sbjct: 654 ASSEAVEFADLSMELISFHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARG 713

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             L M+ +S L W  ++ + +  GMRNSN MAIAPTATI+NICGV QSI+P Y+NL+VK+
Sbjct: 714 GALDMDTSSTLDWSSVRDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKA 772

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTV+N  LV +LK R LWD AM+SDLKY DG++  ++R+P +LK ++ATAFE+  
Sbjct: 773 NMSGDFTVLNRHLVADLKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSS 832

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+ASRRQKWIDQAQSLNLYL  PSG+ LD +YR AW  GLKTTYYLRS SAT VEK
Sbjct: 833 DWLVEAASRRQKWIDQAQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEK 892

Query: 914 STLKGVDGKLNAVPVTDPNSSTH-----------------SLGIPSSCTSDTECEVCQ 954
           STL+G DGKL  V +    +                         +   +D +CE CQ
Sbjct: 893 STLRGTDGKLTGVTLPPAAAPAARPAASSPSPAPVPELVLPAEGAACSITDPDCEACQ 950


>gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
 gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
          Length = 944

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/950 (56%), Positives = 683/950 (71%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQ-----QTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALKATVNRAAEGLEGIEVEAIIDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR     LR E+++T                       ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARL----LRDELVSTGL----AFLGLPADTAENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P---------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                   + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 944


>gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 928

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 539/927 (58%), Positives = 690/927 (74%), Gaps = 18/927 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RNG +T+FDP KI  A+ KAF+AVEG+ ++ + R+Q +   LT Q V  L +   +
Sbjct: 18  QVIRRNGALTAFDPDKIQLAMKKAFLAVEGERSADAARIQQVTAELTAQVVQALTRR-PT 76

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           A  +HIEDIQDQVE +LM++G HK+ R YVLYREE +  R  ++  +      P+L +  
Sbjct: 77  ATPIHIEDIQDQVELALMRAGEHKVARAYVLYREEHARKRRQEATDE-----PPRLHMTR 131

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG  +  +   L  ++  AC  L D   + V  E ++N+YDG++E ++  ALI S+R+L
Sbjct: 132 TDGEQVPLDESLLRRVLHHACHELADTDPERVAREAWRNLYDGVTEQEVHKALILSARSL 191

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE+EP Y  V AR L  +L  E L  +      A   +    Y +YF RYI  GV+  LL
Sbjct: 192 IEQEPAYGHVAARLLQHQLNGEALRFLDFPYDGAPGADPG--YTDYFARYIRRGVELELL 249

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E ++ FDL  LA  L  ERD  F YLGLQ LYDRY  H +G+R E+PQAFFMRVAMGL 
Sbjct: 250 DEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMGLT 309

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E E+E+RA+EFY LLSSF FM STPTLFNSGTR PQLSSC+LT+VPDDL GI+GA+++
Sbjct: 310 LQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAIRD 369

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWT VR +GAHI GTNG+SQGV+PFLKVA+DTAVAVNQGGKRKGAVC
Sbjct: 370 NALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGAVC 429

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTA+W+PDLFM+R   +A WTLFSPD+ + 
Sbjct: 430 AYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDAAH 489

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LH+LYG+ F+ AYE+ E +A RGEI+ ++ +SA  LWR+ML MLFETGHPWITFKDPCN+
Sbjct: 490 LHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPCNL 549

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGS+NL AH   +  D+++L +T+RTA+
Sbjct: 550 RSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRTAM 609

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +++ +A+++N  HR +GLG+MGFQ AL+   +PYAS EAV  AD S E 
Sbjct: 610 RMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQEA 669

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDE 748
           IS++AI AS +LA+ERGAY SF+GSLW +G  P+DSI  + E RD +  M+ +S L W  
Sbjct: 670 ISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGDCTMDTSSSLDWAA 729

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++V+T GMRNSNC+AIAPTATIANI GVSQ I+P+++NLYVKSN+SG+FTVVN  LV 
Sbjct: 730 LREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPALVR 788

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            LK   LWD  M++DLKY+DGS+  I R+P++LK+  ATAFE+D  WL+++ SRRQKW+D
Sbjct: 789 ALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQKWLD 848

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           Q+QSLNLY+ EPSG KLD +YRQAW +GLKTTYYLRS  AT VEKST+            
Sbjct: 849 QSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKSTMDPARAN------ 902

Query: 929 TDPNSSTHSLGIPSSCT-SDTECEVCQ 954
              N+ + + G   SC+  D ECE CQ
Sbjct: 903 -RLNAVSAAPGGGQSCSVDDPECEACQ 928


>gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           aquaeolei VT8]
 gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter
           aquaeolei VT8]
          Length = 949

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/939 (56%), Positives = 687/939 (73%), Gaps = 31/939 (3%)

Query: 20  YPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            P P    + +QVIKRNG + SF+P+KIS A+ KAF+AVEG  A+ S R+ D +  +TEQ
Sbjct: 38  PPAPATDTQSLQVIKRNGTLVSFNPAKISVAVTKAFLAVEGDQAAGSARINDAVHRVTEQ 97

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  R         
Sbjct: 98  VVQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARQR----AVDEP 153

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P L +   DG++   +   ++  VE+A +GL  ++   ++ +  +N+YDG+ E+++
Sbjct: 154 VEAHPHLTVKKADGSIAPLDLGLMKQQVEQASTGLDGINGDSLVEDALRNLYDGIEETEV 213

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            +ALI ++R  IE+EP+Y+ VTAR LLE+    +     +         +  +YP+    
Sbjct: 214 LSALIMTARGRIEREPDYSAVTARLLLEQ----LRLETAEALDLPRSLPLAEIYPQALSA 269

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           +I  G++  LL E++  FDL  L N LK ERD  F +LGLQ LYDRYFLH N +R+E+PQ
Sbjct: 270 FIHAGIRYELLDEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLELPQ 329

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FFMRVAMGLAL+E +   RA+EFY LLSSF +M STPTLFNSGTRH QLSSC+LTTV D
Sbjct: 330 VFFMRVAMGLALREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVGD 389

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL GI+GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVAV
Sbjct: 390 DLEGIYGAIRDNALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAVAV 449

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ ++  
Sbjct: 450 NQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRE 509

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSP +V DLHDLYG  F   Y++YE  A++G+IK+F+KI A  LWRKMLT+LFETGH
Sbjct: 510 WTLFSPSDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGH 569

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH  + + D 
Sbjct: 570 PWITFKDPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGELDV 629

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L +PY+SPE
Sbjct: 630 TRLERTVNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPE 689

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DEL 736
           AVE AD +ME +S+ A+ AS  LA ERGAY +++GSLW QG+ P+DS+GLL + R   +L
Sbjct: 690 AVEFADVAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDL 749

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           ++N  SRL W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+S
Sbjct: 750 SLNTNSRLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLS 809

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP +LK  +ATAFEIDP WL
Sbjct: 810 GEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWL 869

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT  EK+  
Sbjct: 870 VEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT-- 927

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                     PV+ P         P  C+ D  +CE CQ
Sbjct: 928 ---------APVSAPQ--------PQVCSIDNPDCEACQ 949


>gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
 gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
          Length = 944

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/949 (55%), Positives = 681/949 (71%), Gaps = 38/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRISQLTEMVMNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQ-----QTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L   +E A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DHNGQLQPLDLDALTATIETASEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L             +           +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNEL--------VGTGLEFLGLSTDTSENDALEPFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYTHYEAVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---------- 916
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKP 896

Query: 917 ----------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                     + V+ K     V + +  T +  +P +C+ D  +CE CQ
Sbjct: 897 ASVEAPVVAAQAVEEKKPEAQV-EEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 969

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/945 (57%), Positives = 690/945 (73%), Gaps = 22/945 (2%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +   ++++RNG V +F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V  L
Sbjct: 33  AALADYRILRRNGAVVAFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTATVVAAL 92

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   +    HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  ++  A    
Sbjct: 93  VRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERALQQAARPAAASV- 151

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202
           +L +  +DG     + +++  +++ AC GL+  V +  + +ET KN+YDG+   +L  + 
Sbjct: 152 QLHVT-EDGQRRLLDMQQVHKLIDAACIGLEKHVDANAIFAETVKNLYDGVPVEELHKSA 210

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++R L+EK+P Y  VTAR L+  +R+EV        ++    + Q  Y EYF ++I  
Sbjct: 211 ILAARALMEKDPAYTTVTARILMHVIRKEVFG------KEVAQADAQAHYLEYFPQFIHN 264

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+ A LL   +  FDL  LA  L  +RD  F Y+GLQ LYDRYFLHI   RIEMPQAF+M
Sbjct: 265 GIAAELLDAKLAGFDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYM 324

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLAL E ++E+RA+EFYNLLSSF FM STPTLFNSGT   QLSSC+LTTV DDL G
Sbjct: 325 RVAMGLALNEAKREERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEG 384

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A+++NA+LAKY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGG
Sbjct: 385 IYDAIKDNALLAKYAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG 444

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV +   W LF
Sbjct: 445 KRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLF 504

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP EV DLHD  G+ FE AY  YE  A RGE+++F+K+ A+ LWRKML+MLFETGHPWIT
Sbjct: 505 SPSEVPDLHDKVGRAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWIT 564

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH  + Q D+ KL 
Sbjct: 565 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQ 624

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TIR A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ  LH++ +PYAS EAV  
Sbjct: 625 KTIRIAMRMLDNVIDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSF 684

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD+SME + ++A +AS ELA+ERGAYSS+KGSLWD+G+ P DS+ LL E R   L  + +
Sbjct: 685 ADKSMEAVCYYAYTASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGGYLETDLS 744

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             + W  L+ R+K  GMRNSNC+AIAPTATI+NI GV+  I+P+YQNLYVKSN+SG+FT 
Sbjct: 745 EAMDWTPLRARIKQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTE 804

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N +LV +LK RDLWDE MISDLKY DGS+  I+R+P +L+ I+ATAFEI+P WL+E+AS
Sbjct: 805 INEYLVRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAAS 864

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK---- 917
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST K    
Sbjct: 865 RRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSKTGSL 924

Query: 918 ---GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-----TECEVCQ 954
                DG  + V ++   ++   +  PS           ECE CQ
Sbjct: 925 NAVSADGVSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969


>gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 944

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/949 (55%), Positives = 681/949 (71%), Gaps = 38/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQ-----QTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L             +        L  +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNEL--------VSTGLEFLGLPTDTLEGDALETFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+F+GSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---------- 916
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKP 896

Query: 917 ----------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                     + V+ K     V +    T +  +P +C+ D  +CE CQ
Sbjct: 897 ASVEAPVVAAQAVEDKKPEAQV-EEEGFTTAAPVPMACSIDNPDCEACQ 944


>gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 921

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/947 (56%), Positives = 689/947 (72%), Gaps = 33/947 (3%)

Query: 14  AFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  +LA P P      + +QVIKRNG +  FDPSKIS A+ KAF+AVEG  A+ S R+ D
Sbjct: 2   SASALAEPRPTSHTDTESLQVIKRNGTLVGFDPSKISIAVTKAFLAVEGDTAAGSARIND 61

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +  +T+Q +  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA
Sbjct: 62  AVHRVTDQVIQAIGRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA 121

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                 +     P L +    G +   +   +++ VE+A +GL+ +    ++ +   N+Y
Sbjct: 122 RH----APVEAHPHLTVKKTSGEIAPLDLGLMKLQVEQAATGLEGIDGDSLVDDALTNLY 177

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++E D+ +ALI ++R+ IE+EP+Y+ VTAR LLE+    +               +  
Sbjct: 178 DGIAEEDVLSALIMTARSRIEREPDYSAVTARLLLEQ----LRLENAAALGLPISLPLAE 233

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           +YP+    ++E G++  LL E++  FDL  L   L+ ERD  F +LGLQ LYDRYFLH N
Sbjct: 234 IYPQALSAFVEAGIRYELLDEALAAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWN 293

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            +R+E+PQ FFMRVAMGLAL+E +   RA+EFYNLLSSF +M STPTLFNSGTRH QLSS
Sbjct: 294 KARLELPQVFFMRVAMGLALREDDPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSS 353

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL  I+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV
Sbjct: 354 CYLTTVGDDLEDIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKV 413

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL +
Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +R+ ++  WTLFSP +  DLHDLYG  F   YE+YE  A++G+IK+F+KI A  LWRKML
Sbjct: 474 ERMREDRDWTLFSPSDAPDLHDLYGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKML 533

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH
Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAH 593

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            AN + D  +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLG+MGFQ AL+ L
Sbjct: 594 IANGELDVQRLEQTVNTAVRMLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQL 653

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY+SPEAVE AD +ME +S+ AI AS  LA ERGAY S++GSLW QG+ PIDSI LL 
Sbjct: 654 GLPYSSPEAVEFADVAMEQLSYFAIRASATLAGERGAYESYEGSLWQQGILPIDSINLLK 713

Query: 731 EVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E R   +L++N  +RL W  +++ + T GMRNSN MAIAPTATI+NI GVSQSI+P+YQN
Sbjct: 714 ENRREGDLSVNTNARLDWSPVRELIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP++LK  +ATA
Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATA 833

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  A
Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGA 893

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           T  EK+            PV  P         P  C+  D +CE CQ
Sbjct: 894 TGAEKT-----------APVAAPQ--------PQVCSIDDPDCEACQ 921


>gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
 gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
          Length = 944

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/949 (55%), Positives = 682/949 (71%), Gaps = 38/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQ-----QTGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L             +        L  +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLCNEL--------VSTGLEFLGLPTDTLEGDALETFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAHYEAVAKE-QNMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---------- 916
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKP 896

Query: 917 ----------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                     + V+ K     V + +  T +  +P +C+ D  +CE CQ
Sbjct: 897 ASVEAPVVAAQAVEDKKPEAQV-EEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax
           ferrireducens T118]
 gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 981

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/984 (54%), Positives = 690/984 (70%), Gaps = 43/984 (4%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  +         +       +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 9   PARHSDVPAVHRMDGIDDTAAHSLSQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQG 68

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  L++   +    HIED+QDQVE  LM+ GHH++ R YVLYR
Sbjct: 69  AASASVRESVDGLTQGVIHALMRSRPAGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYR 128

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181
           E+R+  RA Q    + A  AP L ++   G ++  +  RL+ I+E AC+GL  D+  + +
Sbjct: 129 EKRTQERAQQ--LIATAATAPLLHVVDKGGRIV-LDLARLKGIIESACAGLGADIKPEPI 185

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L+ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L   +  EVL       +
Sbjct: 186 LAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLFHTIANEVLG------R 239

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                +M   Y +YF ++I++G+   LL E +  FDL  L   LK ERD  F+YLGLQ L
Sbjct: 240 DVVQADMAQAYVDYFPQFIKKGIDHELLDERLQQFDLQRLGAALKAERDLKFDYLGLQTL 299

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNS
Sbjct: 300 YDRYFLHVGKARIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNS 359

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LGAHI GTNG+S
Sbjct: 360 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGAHIKGTNGES 419

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 420 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 479

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFM+RV +   WTLFSP+ V DLHD +G +FE AY  YE +A RGEI+  R + 
Sbjct: 480 ANWVPDLFMRRVMEKGQWTLFSPNNVPDLHDKFGADFEKAYVAYEEKAARGEIRPARTVQ 539

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 540 AADLWRKMLTMLFETGHPWITFKDACNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCN 599

Query: 602 LGSINLLAHFAN---------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           LGS+NLL H  N            D+ KL  TI TA+R+LDNVIDIN + ++KA+ +N  
Sbjct: 600 LGSVNLLQHLKNAPAGSADGAKVLDHAKLQKTITTAMRMLDNVIDINFYAVKKARDANMR 659

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR +GLG+M FQ +L+ L IPYAS  AV  AD SME I ++A  AS ELA+ERG Y+S+K
Sbjct: 660 HRPVGLGVMAFQDSLYELRIPYASDAAVAFADTSMEAICYYAYWASTELARERGQYTSYK 719

Query: 713 GSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           GSLWDQG+ PID++ +LA  R   + ++R+S L W+ L+K++   GMRNSNC AIAPTAT
Sbjct: 720 GSLWDQGILPIDTLDMLARERGGYVEVDRSSTLDWEALRKKIAKDGMRNSNCTAIAPTAT 779

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+NI GV  SI+P + NL VKSN+SG+FT++NS+LV +LK+  LWD+ M+ DLK+ DGS+
Sbjct: 780 ISNIIGVDASIEPCFGNLSVKSNLSGEFTIINSYLVQDLKRLGLWDDVMVMDLKHFDGSL 839

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             I+R+P D+K ++ATAFEI+  WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ 
Sbjct: 840 NPIDRVPADVKALYATAFEIETRWLVEAAARRQKWIDQAQSLNIYMGGASGKKLDDTYKL 899

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN------------------- 932
           AW+ GLKTTYYLR+ SAT  EKST+    G++NAV     +                   
Sbjct: 900 AWIRGLKTTYYLRTMSATHAEKSTV--TAGRMNAVSSGSESAHGGASMSALDAAAATARM 957

Query: 933 --SSTHSLGIPSSCTSDTECEVCQ 954
             +S  +  I      D  CE CQ
Sbjct: 958 QMASGPATDIKFCGVDDPTCESCQ 981


>gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia
           sp. P1]
          Length = 927

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/930 (58%), Positives = 675/930 (72%), Gaps = 18/930 (1%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
                  A P+   P       ++VI+R+G  TSFD SKIS A+ KAF+AVEG   + S 
Sbjct: 2   TASTAPPASPNGIAPA-----ALRVIRRDGSETSFDASKISVAMTKAFLAVEGGAGASSS 56

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           R+  +++ LT Q V  L  H     +V +E IQDQVE +LM+  HHK+ R YVLYRE+++
Sbjct: 57  RLHPLVQELTGQVVAAL--HRHPTPVVQVEQIQDQVELALMRGEHHKVARSYVLYREQQA 114

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
             RA+          +  + +   DGT    +  R+E ++ EA  G+ DV +  VL+E  
Sbjct: 115 QARAS---GPDAGGASATIHVTGPDGTRAPLDRDRVETVLAEALDGIDDVEAAPVLAELD 171

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +YDG++  +L  AL+ ++RTL+E+EP+Y+ V +R L+++LR E ++ +    +     
Sbjct: 172 RTVYDGITADELSQALVMAARTLVEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQA 231

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
            M   Y  Y   Y+   +   L+   +  FDL  +   L  ERD    +LGLQ LYDRYF
Sbjct: 232 TMARDYASYTKDYLRHAIAIGLVDAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYF 291

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LH +G+R E+PQAFF+RVAMGLA++E ++E RA+EFY LLSSF FM STPTLFNSGT  P
Sbjct: 292 LHEHGTRFELPQAFFLRVAMGLAVREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRP 351

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCFLTTV DDL  IFG  + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG SQGV+P
Sbjct: 352 QLSSCFLTTVDDDLDSIFGGYRNNALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVP 411

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLK+A DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+P
Sbjct: 412 FLKIAGDTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVP 471

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D F++RV  +  WTLFSPDEV DLHDLYG EF   Y  YE  A+RGE++V R + AV LW
Sbjct: 472 DEFLRRVEADTTWTLFSPDEVPDLHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLW 531

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVC 600
           R+MLTMLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+         E AVC
Sbjct: 532 RRMLTMLFETGHPWVTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVC 591

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL AH   +  D DKL  T+ TAVR+LDNV+DIN +TI +A++SN  HR +GLG+
Sbjct: 592 NLGSVNLAAHVTRDGLDADKLRRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGM 651

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF  AL L  I   S  AV  AD S E +S+HAI+AS +LA ERG Y+SF+GSLW +GV
Sbjct: 652 MGFSDALFLQRIAPGSEAAVGFADVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGV 711

Query: 721 FPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDS+ LLA+ R   EL ++R+S L W  L++ V+T GMRNSN +AIAPTATI+NICGV
Sbjct: 712 LPIDSLDLLADARGEGELEIDRSSTLDWASLRETVRTQGMRNSNVLAIAPTATISNICGV 771

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            QSI+P + NLYVKSNMSGDFTVVN  LV +LK+R LWDE M+SDLKY DGS+  I+R+P
Sbjct: 772 GQSIEPIHLNLYVKSNMSGDFTVVNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVP 831

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK+++ATAFEI+P WL+E+ASRRQKW+DQAQSLNLYL  PSG+KLD +YR AW  GLK
Sbjct: 832 GDLKELYATAFEIEPRWLVEAASRRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLK 891

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           TTYYLR+R+ATSVEKSTLKG DG+L  VP 
Sbjct: 892 TTYYLRTRAATSVEKSTLKGTDGRLTGVPT 921


>gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
 gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
          Length = 943

 Score =  999 bits (2583), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/949 (55%), Positives = 684/949 (72%), Gaps = 39/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V SFD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVASFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFSRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YR++R+D R     +       P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYRDQRADARKQAGENH-----HPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   + ++LE  V +A  GL+ ++ + ++ ET KN+Y+G+  SD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDMRKLEATVTKAAEGLEGINVQAIIDETIKNLYNGVKASDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L        +    + T         +    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELV--ATGLTFLGLSEDTAE------GDALETFLKKGIELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+PQ FFMRV+MGL
Sbjct: 238 LSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 SLNEANREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A      + +KI A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLMGAEFAERYAHYEAIAKET-NMLHKKIRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL W
Sbjct: 657 VISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKDRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P--------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                V +      +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVTAAPVAAVAQEVKPEVVAEDEGFGQAAPVPMACSIDNPDCEACQ 943


>gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. ADP1]
 gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ADP1]
          Length = 941

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/947 (57%), Positives = 688/947 (72%), Gaps = 37/947 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +   
Sbjct: 11  LQVIKRNGEVATFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFNRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G HKI R YV+YRE+RS+ R      +S A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEHKIARSYVIYREQRSNARQ-----QSGANHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +   L+  VE+A  GL+ +  + ++ ET KN+Y+G+  SD+ T ++ ++RT
Sbjct: 126 DAQGQLQPLDLDALKATVEKAAEGLEGIEIQAIVEETVKNLYNGVKVSDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE EPNY  VTAR     LR E    +  K  +           +    ++++GV+  L
Sbjct: 186 RIEHEPNYTYVTARL----LRNE----LVAKGLEFLGLSEDTAENDALETFLKKGVELEL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ LYDRYF+H +G R E+PQ FFMRV+MGL
Sbjct: 238 LDPELLNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A+ E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 AINEDNREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAIR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P EV 
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEVP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G+EF   Y  YE  A   +  + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGEEFAQRYAYYESIAKE-QNLLHKKVRAQDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D DKLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ +++ Y S EAV  ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERG YS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRNKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                              VT  +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPTTVAAPVAAVAQETKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941


>gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
 gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
          Length = 942

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 526/946 (55%), Positives = 681/946 (71%), Gaps = 34/946 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S RV D I  LTE  +    +   
Sbjct: 11  LQVIKRTGEVAAFDAEKISVAIGKAFLAVEGQQSADSSRVHDRITQLTEMVMNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++ A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRNQARQ-----QTGAHHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L   +  +L+  +E+A  GL+ +  + ++ ET KN+Y+G+  SD+ T ++ ++RT
Sbjct: 126 DSKGQLQPLDMSKLQTTLEKASEGLEGIDVQAIIDETVKNLYNGVKASDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L ++L        +    + T         E    ++++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLRDELV--ATGLAFLGLSEDTPE------SEALEAFLKKGIELEL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LDAELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A++E ++E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 AVQEDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTISDDLYNIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G  F   Y  YE  A   +  + +KI A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGSAFAERYAYYESVAKE-QNMLHKKIRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H    + D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ L + Y S  AVE ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGSDAAVEFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R +    ++RT RL W
Sbjct: 657 VISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDRMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 NTLRTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIPD+LK I ATAFE++P W++++ASRRQKW
Sbjct: 777 VRALKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-------- 918
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKA 896

Query: 919 ---------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                       +     V + +    +  +P +C+ D  +CE CQ
Sbjct: 897 TAAAPVAAAPVVETKPETVAEEDGFAQAAPVPMACSIDNPDCEACQ 942


>gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 944

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/950 (56%), Positives = 681/950 (71%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQ-----QTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    LT +                      ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFL--------GLSTDTPENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A      + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKET-NMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                   +    T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 944

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/950 (56%), Positives = 681/950 (71%), Gaps = 40/950 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQ-----QTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    LT +                      ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLCNELVSTGLTFL--------GLSTDTPENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A      + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKET-NMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 ---------------------PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                   +    T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEVKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
 gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
          Length = 943

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/949 (56%), Positives = 681/949 (71%), Gaps = 39/949 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQ-----QTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATVAKAAEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +                      ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPT--------DTPENNALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 ALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A      + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKET-NMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S  A++ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERG+YS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 P--------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                  + +  T +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVEAAAVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
 gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
          Length = 943

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/947 (55%), Positives = 679/947 (71%), Gaps = 35/947 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LTE  +    +   
Sbjct: 11  IQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLTEMVLNTFTRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R      ++++   P L++ 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQ-----QTNSNHHPTLQVT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L+  + +A  GL+ +  + ++ ET KN+Y+G+ E+D+ T ++ ++RT
Sbjct: 126 DANGQLQPLDLSALQATIAKAAEGLEGIDVQAIVDETVKNLYNGVKETDIATTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L  +L    L  +                      ++++GV+  L
Sbjct: 186 RIEQEPNYTYVTARLLSSELVSTGLAFLGLPT--------DTPENTALEAFLKKGVELDL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MGL
Sbjct: 238 LSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            L E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 TLNEQNKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y  YE  A      + +K+ A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAYYESVAKET-NMLHKKVRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S  A++ ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGSDAAIDFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL W
Sbjct: 657 VISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG------VD 920
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+          
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVKP 896

Query: 921 GKLNAVPVTDP------------NSSTHSLGIPSSCTSD-TECEVCQ 954
             + A PV  P            +  T +  +P +C+ D  +CE CQ
Sbjct: 897 ATVEAAPVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 943


>gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
 gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
          Length = 945

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/951 (56%), Positives = 683/951 (71%), Gaps = 41/951 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I+ LTE  +    +   
Sbjct: 11  LQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRIEQLTEMVLNTFKRRLP 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+RS+ R         A   P L+I 
Sbjct: 71  SGGTIHIEEIQDQVELALMRTGEQKVARSYVIYREQRSEARKQLG-----AHHHPTLQIT 125

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G L   +   L   V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++RT
Sbjct: 126 DAEGKLKPLDLSALTAHVTKAAEGLEGIDVQAIVDETVKNLYNGVKESDISTTMMMATRT 185

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EPNY  VTAR L + L   V T +     K     +  +  +    Y+++G++  L
Sbjct: 186 RIEQEPNYTYVTARLLRDDL---VATGL-----KFLGLPVDTVEGDALETYLKKGIELEL 237

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+PQ FFMRV+MGL
Sbjct: 238 LSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMGL 297

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L E  +E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA++
Sbjct: 298 SLNEENREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAMR 357

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 358 DNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAV 417

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E  
Sbjct: 418 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSETP 477

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL G EF   Y +YE  A      + +KI A  LWRKML+MLFETGHPWITFKD CN
Sbjct: 478 DLHDLTGAEFAERYAHYEAIAKET-NMLHKKIRAKDLWRKMLSMLFETGHPWITFKDVCN 536

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGSINL+ H      D +KLA T++TA
Sbjct: 537 LRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTVKTA 596

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +A+ SN  HR +G+G+MGFQ AL+ +++ Y S  AVE ADESME
Sbjct: 597 VRMLDNVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADESME 656

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
            IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL W
Sbjct: 657 VISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLDW 716

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +L
Sbjct: 717 DTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPYL 776

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRRQKW
Sbjct: 777 VRALKERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRRQKW 836

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNAV
Sbjct: 837 IDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNAV 894

Query: 927 ----------------------PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                                    +      +  +P +C+ D  +CE CQ
Sbjct: 895 KPATVAAPVVAAAPVVEAQKPEAPAEEEGFAQAAPVPMACSIDNPDCEACQ 945


>gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
 gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
          Length = 942

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/944 (54%), Positives = 660/944 (69%), Gaps = 23/944 (2%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQT 79
           F   +  + ++KR+G V  FDP +I  A+ KAF A  GK    ++  +D   I+ +T   
Sbjct: 11  FDAHLSALSIVKRDGRVVPFDPHRIRAAVEKAFRADRGKNVGEALSSEDRAAIEEITSAV 70

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           V++          + +E IQD VE +LM+ G+H + + Y+LYR +R   R  ++      
Sbjct: 71  VSKSAALAGRGERLEVERIQDLVELTLMELGYHTVAKRYILYRADRGRARTIKNREGV-- 128

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDL 198
                + ++   G  +  +   +   + EAC GL++  S + +  ET + +YD + E D+
Sbjct: 129 ----SIHMIDKQGRKVPLDLAWIHRTLMEACRGLEESCSWRELAEETVRGLYDEIKEEDV 184

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             A+I ++R+ +EKEP Y  V AR +L K+  E L+ V         HE    +  YF  
Sbjct: 185 VQAMILTARSWVEKEPAYTYVAARLMLGKIYEEALSLVPSI------HETAEYHKAYFPS 238

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           YI+ GVK   L   +++F+L  LA  L+ ERD  F YLGLQILYDRY LH    RIE PQ
Sbjct: 239 YIDFGVKIGRLSPRLLEFNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETPQ 298

Query: 319 AFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+MRVAMGLAL E  ++E  A+ FY+ LS F FM STPTLFNS T HPQLSSC+L TV 
Sbjct: 299 YFWMRVAMGLALNEKEDRELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTVE 358

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GIF  + +NA L+K++GGLGNDWT VR  G+ I GTNGKSQGVIPFLKVANDTAVA
Sbjct: 359 DDLDGIFKVISDNARLSKWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAVA 418

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGA+CAYLETWH+D+E+FL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV QN 
Sbjct: 419 VNQGGKRKGALCAYLETWHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQNG 478

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP +V DLH LYGK+FE  Y  YE+ ADRGEIK+F+++SAV LWRKMLT+LFETG
Sbjct: 479 SWTLFSPSDVPDLHHLYGKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFETG 538

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616
           HPWITFKDP NIRSPQ HVGV++SSNLCTEI LN+S EE AVCNLGSINL AH     + 
Sbjct: 539 HPWITFKDPSNIRSPQDHVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGEI 598

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  KL  TIR AVR+LDNVIDIN + I +A+ +N  HR +GLG+MGFQ  L++  IPY S
Sbjct: 599 DEKKLQETIRIAVRMLDNVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYGS 658

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +AVE+AD  ME +S+HAI +S ELA+ERG+YS+FKGS WD+G+ PID+I LL E R+  
Sbjct: 659 EKAVEVADRLMEMVSYHAILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQREGF 718

Query: 737 -AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++R+    WD ++K++K  G+RNS  +AIAPTATI+NI GV QSI+PSY+NLYVKSN+
Sbjct: 719 VEVDRSQTKDWDYVRKKIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSNL 778

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  +N +LV +LK+ +LWD+ MI DLKY+DGS+  IERIP +LK+++ATAFEIDP +
Sbjct: 779 SGDFISINPYLVADLKKLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPYF 838

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +IE ASRRQKWID  QSLNLY+DEPSG K+  +Y   W  GLKTTYYLRSR+AT+VEKST
Sbjct: 839 IIECASRRQKWIDMGQSLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKST 898

Query: 916 LKGVDGKLNAVPVTDPNSSTH-----SLGIPSSCTSDTECEVCQ 954
           L      +    +   + S +     +    ++C+ D ECE CQ
Sbjct: 899 LDVNARGIQPRWMKSKSPSANIRVERNEKEKNACSLDPECESCQ 942


>gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 921

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/947 (55%), Positives = 677/947 (71%), Gaps = 33/947 (3%)

Query: 14  AFPSLAYP---FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  +LA P          +QVIKRNG +  FD SKIS A+ KAF+AVEG  A+ S R+ D
Sbjct: 2   STATLAEPGQSASTSTASLQVIKRNGALVGFDASKISVAVTKAFLAVEGDEAAGSARIHD 61

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++ +T Q +  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYRE  +  R 
Sbjct: 62  SVERVTHQVMQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREAHAQER- 120

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
               S +     P L +   +G     +   +++ VE A   L+ +  + ++    +N+Y
Sbjct: 121 ---ASLAPVEAHPTLTVKKANGEAAPLDLGLMKVQVERASQELEGIDGESLVEGALRNLY 177

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++E ++ +ALI ++R  IE+EP+Y+ VTAR LLE+LR E  T +    +      +  
Sbjct: 178 DGIAEEEVLSALIMTARGRIEQEPDYSAVTARLLLEQLRLETATAL----KLPLSLPLAE 233

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           +YP+    +IE+G+   LL E+M  FDL  L   LK ERD+ F +LGLQ LYDRYFL+  
Sbjct: 234 IYPQALSTFIEQGIHYELLDEAMAAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWK 293

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G R+E+PQ FFMRV+MGLAL+E +   RA+EFY+LLSSF +M STPTLFNSGTRH QLSS
Sbjct: 294 GDRLELPQVFFMRVSMGLALQEDDPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSS 353

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL GI+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG SQGV+PFLKV
Sbjct: 354 CYLTTVQDDLEGIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKV 413

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL +
Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +R+  +  WTLFSP++  DLHDLYG  F   Y+ YE  A RGEI +F+ +SA  LWRKML
Sbjct: 474 ERMRSDQDWTLFSPNDTPDLHDLYGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKML 533

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL AH
Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAH 593

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N + D  +L  T+ TAVR+LDNV+DIN + + +A+ SN  HR +GLGLMGFQ AL+ L
Sbjct: 594 VHNGELDVQRLERTVNTAVRMLDNVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRL 653

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           ++PY S EAVE AD +ME IS+ AI AS  LA ERGAY +++GSLW +G+ PIDSI LL 
Sbjct: 654 NLPYTSAEAVEFADVAMEQISYFAIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLK 713

Query: 731 EVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             R   +L++N  + L W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQN
Sbjct: 714 ANRREGDLSLNTDTLLDWTPVRELIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP  LK  +ATA
Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATA 833

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ +W  GLKTTYYLRS  A
Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGA 893

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T  EK+            PV  P         P  C+ D  +CE CQ
Sbjct: 894 TGAEKT-----------APVAAPQ--------PQVCSIDEPDCEACQ 921


>gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 948

 Score =  987 bits (2552), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/951 (57%), Positives = 694/951 (72%), Gaps = 38/951 (3%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P +    +VI+RN  + +FD SKI  A+ KAF+AVEG   + S RV+D++  LTEQ +  
Sbjct: 17  PSEASHYKVIRRNNAMVNFDASKIHIAVTKAFLAVEGGSGAASARVRDLVSRLTEQVIEA 76

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L +        HIEDIQDQVE +LM++G H++ R YVLYREER+  R  Q+ +++ A + 
Sbjct: 77  LKRRQPGGGTFHIEDIQDQVELALMRAGEHEVARAYVLYREERARERRQQAAAETPADV- 135

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETA 201
           P +++   +G+  + +  RL  +++EACSGL   VS   +L  T KN+YDG+SE +L  A
Sbjct: 136 PVIRVSYPNGSQRALDMVRLRAVIDEACSGLGTAVSIDAILGNTVKNLYDGISEDELFQA 195

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I +SR LIE++P YA  +AR LL+++R EVL       + AT  EM   YP+YF  Y++
Sbjct: 196 PILASRVLIERDPAYAYASARLLLDRVRWEVLG------EAATQAEMTARYPQYFRDYLQ 249

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G++  L+   +  +DL  +   L+ ERD  F+YLG+QILYDRYFLH+   RIE+PQAF+
Sbjct: 250 TGIQNELIDPRLGQYDLERITAALRPERDLDFQYLGMQILYDRYFLHVRERRIELPQAFW 309

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMGLA+ E ++E  A+ FY +LSSF F+ STPTLFN+GT  PQLSSCFLTTV DDL 
Sbjct: 310 MRVAMGLAMNEVDRETHAIAFYEVLSSFDFVSSTPTLFNAGTLRPQLSSCFLTTVGDDLD 369

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+ A++ENAML+K+SGGLGNDWTPVR LG+ I GTNGKSQGV+PFLKV NDTAVAVNQG
Sbjct: 370 DIYEAIKENAMLSKFSGGLGNDWTPVRALGSFIKGTNGKSQGVVPFLKVVNDTAVAVNQG 429

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTL
Sbjct: 430 GKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMERVENNAMWTL 489

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP+E  DLHDL G  F   YE+YER AD G I++F++I A+ LWRKMLTMLFETGHPWI
Sbjct: 490 FSPNETPDLHDLTGSAFRERYEHYERMADAGGIELFKRIPAIHLWRKMLTMLFETGHPWI 549

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613
           TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NL++H           
Sbjct: 550 TFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNAKEIAVCNLGSVNLVSHLRAVADAGALR 609

Query: 614 ---------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                       D +KL  TIR A+R+LDNVID+N + + KA+ SN  HR +GLGLMGF 
Sbjct: 610 EDSTPEELLAMMDGEKLHHTIRVAMRMLDNVIDMNYYAVAKARNSNLRHRPVGLGLMGFS 669

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL  + IPYAS  A+  AD S E IS+HAI AS +LA+ERG+Y SF GSLW QG+ PID
Sbjct: 670 DALLQMRIPYASAAALAFADISQEVISYHAIDASADLARERGSYQSFPGSLWSQGILPID 729

Query: 725 SIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           SI LLA  R+  + ++R+  L W  L+ +V+  GMRNSNC+AIAPTATI+NI GVSQ I+
Sbjct: 730 SIDLLAAGREHGVDVDRSQHLDWATLRSKVRG-GMRNSNCLAIAPTATISNIVGVSQGIE 788

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P YQNLYVKSN+SG+FTVVNS+LV++LK+ +LWDE M++DLKY DGS+  ++RIP  +K 
Sbjct: 789 PIYQNLYVKSNLSGEFTVVNSYLVHDLKRLELWDEVMVNDLKYFDGSVMPVDRIPASIKP 848

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++A AFE DP WL+E+A+RRQKW+DQAQSLNLY  +PSGKK+D IYR AW  GLKTTYYL
Sbjct: 849 LYANAFETDPEWLVEAAARRQKWLDQAQSLNLYFGQPSGKKIDEIYRLAWKRGLKTTYYL 908

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           RS  AT+ EKST++   G LNAV    P +             D  CE CQ
Sbjct: 909 RSLGATAAEKSTVQ--TGTLNAVVSGQPKA---------CAIDDPTCEACQ 948


>gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 916

 Score =  985 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/940 (57%), Positives = 686/940 (72%), Gaps = 28/940 (2%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P +A+     +  +QVI+RNG + SF   KI+ A+ KAF+AV+G+ +  S  ++D++ +L
Sbjct: 4   PEVAF----SLAAMQVIRRNGDIVSFKSEKIAAALTKAFIAVKGEQSPLSSSLRDVVTHL 59

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TE  ++ L         +HIEDIQDQVE +LMQSG H + R YVLYRE+R+ +R      
Sbjct: 60  TETVISALTHRFPDGGSIHIEDIQDQVERALMQSGEHDVARAYVLYREKRAAMR------ 113

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
             +      +  ++D G     +   L  I   AC  L  VSS  + + T K++YDG+S 
Sbjct: 114 --NTSEKKAVLHLVDKGEKKVLDHTWLMNICHVACKNLTSVSSISIFNNTLKSLYDGMSL 171

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +D+ ++LI S+RT+IE EP Y KVTAR L   L  EVL       +    H+++     Y
Sbjct: 172 ADVYSSLILSARTMIEYEPEYNKVTARLLRLSLAYEVLDQS---TELMDLHQLKIATISY 228

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F ++IE G+ A LL   +  F+  YLA  L  ERD  F Y+G+Q LYDRYFLHI   RIE
Sbjct: 229 FPKFIELGINAGLLDPRLSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIE 288

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ FFMRVAMGLAL E +KE +A+EFYNLLS+F FM STPTLFNSGT  PQLSSCFLTT
Sbjct: 289 LPQLFFMRVAMGLALNEKKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTT 348

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DDL  IF +++ENA+L KY+GG+GNDWTPVR LG+ I GTNG+SQGVIPF+KVANDTA
Sbjct: 349 INDDLENIFQSIKENALLQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTA 408

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGGKRKGAVCAYLETWH+D+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +
Sbjct: 409 LAVNQGGKRKGAVCAYLETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLE 468

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N+ WTLFSP++V +LH+ +G EFE  Y +YE +   GEI +F+K+SAV LWRKMLTMLFE
Sbjct: 469 NSDWTLFSPNDVPELHEKFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFE 528

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKD CN+RSPQQH+GV+HSSNLCTEITLN+S EE AVCNLGSINL +H  N +
Sbjct: 529 TGHPWITFKDACNLRSPQQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGE 588

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +KL+ TI TA+R+LDNVIDIN +   KA  +N  HR IG+G+MGF   L+ L IPYA
Sbjct: 589 VDQNKLSQTIATALRMLDNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYA 648

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-D 734
           S +AVE AD SME + ++   AS ELA+ERGAYS+F GSLWD+ + P+DS+ LL + R  
Sbjct: 649 SHQAVEFADRSMEIVCYYTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGG 708

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            L ++R+SRL WD LK R+   GMRNSNC+++APTATI+NI GVSQ I+P+YQNLYVKSN
Sbjct: 709 FLEVDRSSRLDWDALKDRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSN 768

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSG+FT+VN +LVN+LK+ +LWDEAM++DLKY DGS+  I+R+PD LKK++ATAFEIDP+
Sbjct: 769 MSGEFTIVNEYLVNDLKKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPV 828

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           WLIE+ASRRQKWIDQAQSLNLYLD PSGKK+D IY+ AWL GLKTTYYLRS  A+ VEK 
Sbjct: 829 WLIEAASRRQKWIDQAQSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEK- 887

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                      V     +       + +    D ECE CQ
Sbjct: 888 -----------VGTNSQSVLKKDTVLRACSIDDPECEACQ 916


>gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
 gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
          Length = 929

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/954 (54%), Positives = 673/954 (70%), Gaps = 32/954 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S D++   +   P+ +         +QVIKRNG + +F PSKI  A+ KAF+AVEG  A+
Sbjct: 5   SNDLSNKLQAETPAAST---ATAASLQVIKRNGNLVNFTPSKIGVAVTKAFLAVEGDQAA 61

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  +T+Q V  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYRE
Sbjct: 62  GSARINDAVHRVTDQVVQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYRE 121

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           E +  RA            P L +    G  +  +   ++  V+ A  GL  + ++ ++ 
Sbjct: 122 EHARERALH----EPVEAHPTLTVKQAGGRTVPLDLGLMKQQVDNAAFGLDGIDAESLVE 177

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           E+ +N+Y+G+ E+++ +ALI ++R  IE+EP+Y+ VTAR LLE+    +        +  
Sbjct: 178 ESIRNLYNGIDEAEVLSALIMTARGRIEREPDYSAVTARLLLEQ----LRLESVTALKLD 233

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           T   +  +YP+    +I  G++  LL E+M  FD+  L   LK ERD  F +LGLQ LYD
Sbjct: 234 TSLSLADVYPQALSTFINAGIRYELLDEAMAAFDMERLGAALKPERDLQFGFLGLQTLYD 293

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYFLH    R+E+PQ FFMRVAMGL+L+E +   RA+EFY+LLSSF +M STPTLFNSGT
Sbjct: 294 RYFLHWKEDRLELPQVFFMRVAMGLSLREDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGT 353

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           RH QLSSC+LTTV DDL  I+G++++NAML+K++GGLGNDWTPVR +GA I GTNG+SQG
Sbjct: 354 RHSQLSSCYLTTVDDDLEAIYGSIRDNAMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQG 413

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTAN
Sbjct: 414 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTAN 473

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDL ++R+ Q+  WTLFSP++  DLHDLYG  F   Y++YE  A  G+I++F+ I A 
Sbjct: 474 WVPDLLIERMRQDRDWTLFSPNDAPDLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAK 533

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKMLT+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLG
Sbjct: 534 QLWRKMLTVLFETGHPWITFKDPCNLRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLG 593

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL AH  N + D  +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGF
Sbjct: 594 SVNLAAHINNGELDVKRLERTVDTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGF 653

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+ L + Y SP+AVE AD +ME +S+ AI AS  LA ERGAY S++GSLW Q + PI
Sbjct: 654 QDALYALRLSYTSPQAVEFADVAMEQLSYFAIRASARLAAERGAYESYEGSLWSQKILPI 713

Query: 724 DSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DSI  L   R   +L++N  SRL W  ++  +   GMRNSN MAIAPTATI+NI GVSQS
Sbjct: 714 DSIERLKAARLEGDLSVNTDSRLDWAPVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQS 773

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNL+VKSN+SG+FTVVN  LV +LK   LWD  M++DLKY+DGS+  IERIP +L
Sbjct: 774 IEPAYQNLFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTEL 833

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K  +ATAFEID  WL+E+ASRRQKW+DQ QSLNLY+ +PSGKKLD +Y+ AW  GLKTTY
Sbjct: 834 KSRYATAFEIDARWLVEAASRRQKWLDQGQSLNLYMAQPSGKKLDELYQLAWERGLKTTY 893

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           YLRS  AT                    +  ++T +   P  C+ D  +CE CQ
Sbjct: 894 YLRSLGATGA------------------NEQAATVAAPQPQVCSIDEPDCEACQ 929


>gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
 gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
          Length = 926

 Score =  978 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 522/933 (55%), Positives = 658/933 (70%), Gaps = 30/933 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+KR+G   SFD  +I RA+ KAF A       A  S  + + I+ LT   V    +  +
Sbjct: 15  VVKRDGRRVSFDAERIRRALEKAFRATLELPADAPLSAELSEEIEALTGAVV----RWCR 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD+VE +LM++G + + R Y+LY             ++++A    +L   
Sbjct: 71  DRAEVSVEEIQDEVERTLMRAGRYAVARRYILY-----------REARAEARRRQQLTYR 119

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT   F  + L   +E AC GL DV  ++V  E  + +Y G+ E +L+ ALI ++RT
Sbjct: 120 RADGTEAPFPHEALRARIEAACDGLDDVDPELVREELLRTVYPGIPEDELDRALILAART 179

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EP+Y  V AR LL+ L REV              E        F  Y+E GV+   
Sbjct: 180 HIEREPDYTYVAARLLLDALYREVFGRPIPP------SEQAEACRAGFRAYLEHGVRLGR 233

Query: 269 LHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
           L E ++  FD+  LA  L  ERD  F +LGLQ LYDRY LH   G R E+PQ  +MRVAM
Sbjct: 234 LDERLLRTFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAM 293

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E +   RA++FY LLSSF FM STPTLFN+GT HPQLSSC+LTTV DDL  IF A
Sbjct: 294 GLALAEDDPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKA 353

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGVIPFLK+ NDTAVAVNQGGKRKG
Sbjct: 354 IRDNALLSKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKG 413

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE WH+D+EEFL+LR+NTGD+RRRTHDMNTA WIPDLFM+RV +   WTLFSPDE
Sbjct: 414 AVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDE 473

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHDLYG+ F   YE+YER+A+ G I+ +R+I AVALWRKML+MLFETGHPW+TFKDP
Sbjct: 474 VPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDP 533

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTI 625
           CNIRSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGSINL+AH     + D +KL  TI
Sbjct: 534 CNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTI 593

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTAVR+LDNVID+N + I +A+ SN  HR IGLGLMGFQ  L+   + YAS  AVE+ADE
Sbjct: 594 RTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADE 653

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRL 744
            MEFI++ A  AS +LA ERGAY +FKGS WD+G+ P+D++ LL   R E + + RT+RL
Sbjct: 654 FMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPRTARL 713

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+++++  GMRNSN +AIAPTATIANICGVS SI+P+Y+NLYVKSN+SG+FT +N 
Sbjct: 714 DWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNP 773

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK R LWD+ M+ DLKY+DGS+  I+RIP +LK  + TAFEI+P WLIE A+RRQ
Sbjct: 774 YLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQ 833

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQ+QSLNLYL EPSG+KL  +Y+ AW +GLKTTYYLR+ +AT +EKSTL      + 
Sbjct: 834 KWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQ 893

Query: 925 AVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
              +   + S+  +     P+    D  CE CQ
Sbjct: 894 PRWMKSRSPSSDIVVRRDGPACSPDDESCEACQ 926


>gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
 gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
          Length = 973

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/972 (51%), Positives = 666/972 (68%), Gaps = 29/972 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P ++      D   ++  P       ++V KR+G + SFD  +I  AI KAF A  G  
Sbjct: 12  QPVQEEPFEGADVMTTVTSPA----VALEVRKRDGRIISFDVGRIHYAIGKAFRAEIGVA 67

Query: 62  ASRSIR--VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
             + +   ++D +K+++E  + ++     S   V +E IQD VE  LM+ GH  + R Y+
Sbjct: 68  DGQELENSLEDQVKSISEAVIDQIESRPFSRDGVDVESIQDAVEIQLMRHGHFSVARRYI 127

Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSS 178
           LYREE + +RA ++       I P++ +  +DG    F++ RL   V  A  GL+ + S+
Sbjct: 128 LYREEHAKLRALRAADSDGNLIPPRINVKQEDGAKEPFDATRLRRRVYSAVRGLEQNCSA 187

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + ++ ETY+++YDG++  ++  A+I +SR+ IE++P+Y KV AR +L  +  E +  ++ 
Sbjct: 188 EELVEETYRSLYDGITPQEIYRAMILASRSRIERDPDYDKVAARLMLMVIYNEAIGRLHP 247

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
           K       ++  +    F  YI  G++A  L E + DFDL  ++  L+ ERD AF YLGL
Sbjct: 248 K------EDIAEVTRREFSTYISTGIEAGRLAERLRDFDLEKISAALRPERDAAFPYLGL 301

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q +YDRY LHI+G RIE PQ F+MRVAMGLA  E  KE+RA+EFYN+LS+F F  +TPTL
Sbjct: 302 QTIYDRYLLHIDGRRIETPQYFWMRVAMGLAWNEENKEERAIEFYNILSTFRFTSATPTL 361

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT HPQLSSC+L+TV DDL  IF  + +NAML+K++GGLGNDWT +R   AHI GTN
Sbjct: 362 FNSGTLHPQLSSCYLSTVDDDLEHIFKVVSDNAMLSKWAGGLGNDWTNIRATNAHIKGTN 421

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G+SQGVIPFLKV NDTA+AVNQGGKRKGAVC+YLE+WH+DVEEFLDLRKNTGDDRRRTHD
Sbjct: 422 GQSQGVIPFLKVVNDTAIAVNQGGKRKGAVCSYLESWHLDVEEFLDLRKNTGDDRRRTHD 481

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           M+TANWIPDLFMKRV +NA WTLFSPDE  DLHDL G +F+  YE YE+ AD G++++FR
Sbjct: 482 MHTANWIPDLFMKRVRENADWTLFSPDETPDLHDLCGSKFQARYEEYEKLADEGKMRLFR 541

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A  LWRKMLT LFETGHPWIT+KDP N+RSPQ HVGVVHSSNLCTEI LN+S +E A
Sbjct: 542 RLPANELWRKMLTRLFETGHPWITWKDPSNVRSPQDHVGVVHSSNLCTEILLNTSKDEIA 601

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGSINL+AH  N + D +KL  T+ TA R+LDNVIDIN +   +AK SN  HR +G+
Sbjct: 602 VCNLGSINLVAHIRNGELDLEKLQETVTTAARMLDNVIDINYYPTGEAKTSNARHRPVGM 661

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           GLMGFQ AL  L + YAS EAVE AD SME IS+ AI AS +LA ERG Y ++ GS WD+
Sbjct: 662 GLMGFQDALSSLGVSYASQEAVEFADRSMEAISYFAILASSQLAAERGTYETYAGSKWDR 721

Query: 719 GVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           G+ PIDS+ +L + R   + ++R+S L W  ++  V+  GMRNSN MAIAPTATI+ I G
Sbjct: 722 GILPIDSLDILEQERGLPIEVDRSSTLDWQVVRDSVREHGMRNSNVMAIAPTATISTIVG 781

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+Y+NL+VKSN+SG+F  +N  +V +LK   LWD  M+  +KY+DG +  I+R+
Sbjct: 782 VSQSIEPTYKNLFVKSNLSGEFPQLNIRMVQDLKAEGLWDSDMVEAIKYYDGELTEIDRV 841

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PD LK  + TAFE+D  WLIE  +RRQKWID  QSLNLY+ +PSG+KL  +Y  AW +GL
Sbjct: 842 PDHLKLRYLTAFEVDSKWLIECGARRQKWIDMGQSLNLYMAQPSGRKLHDMYMLAWNVGL 901

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---------------SLGIPS 942
           KTTYYLR+ SAT VEKST+      +    + + ++S                     P 
Sbjct: 902 KTTYYLRTLSATQVEKSTIDVNRFGIQPRWMKNASASADIRVDRGDAAEILDELPPEQPK 961

Query: 943 SCTSDTECEVCQ 954
           +C  D +CE CQ
Sbjct: 962 ACNLDGDCESCQ 973


>gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Weiss]
 gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum MopnTet14]
 gi|14195148|sp|Q9PL93|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
            muridarum Nigg]
          Length = 1047

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/938 (52%), Positives = 637/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + VI+R G    F+P KIS A+ KAF A +         V++ +  LT++ V  + + 
Sbjct: 116  QSLSVIRRCGTTVHFNPMKISAALEKAFRATDRIEGMTPDFVREEVNALTQKIVAEIEER 175

Query: 87   N-KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAP 143
              +    + IE IQD VE  LM  GH+   + Y+LYRE R+ VR  +   +   +AP   
Sbjct: 176  CSQQDSRIDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNRVEDQIVEEAPSEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++  DG+       +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  TFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++ +Y ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALD------RSRGDEDLEQVYRDHFKRYIME 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LAN +   RD  F Y+G+Q LYDRYF H +G R+E PQ F+M
Sbjct: 350  GDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLALKE +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 410  RVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNGKSQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGDDRRR HD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++++K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  ++  D +KL+
Sbjct: 650  FKDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R  D L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            + R  W+ ++  ++  GMRN   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IER+PD +K I  TAFEI+P W++E A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CEVCQ
Sbjct: 1010 RGIQPRWMKNKSASAGIVVERASKTPVCSLEEGCEVCQ 1047



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 25/262 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   +++ I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLENSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+YV+YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYINGLQDVARDYVVYRDDRKAHREKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L ++   GT + FN  ++   +E+A             ++  + M       ++    
Sbjct: 117 -SLSVIRRCGTTVHFNPMKISAALEKAFR----------ATDRIEGMTPDFVREEVNALT 165

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                 +   E   ++  +R  +E+++  V   +      AT  +   LY E   R  + 
Sbjct: 166 QKIVAEI---EERCSQQDSRIDIEQIQDIVEQQLMVVGHYAT-AKNYILYREARARVRDN 221

Query: 263 GVKARLLHESMMDFDLVYLAND 284
            V+ +++ E+  +     L+ D
Sbjct: 222 RVEDQIVEEAPSEETFEVLSKD 243


>gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 921

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/927 (54%), Positives = 654/927 (70%), Gaps = 19/927 (2%)

Query: 40  SFDPSKISRAIMKAFMA--VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97
           SFD  +I  AI KAF A  + G   +    +Q +   +T   ++ +L   +   +  IE 
Sbjct: 2   SFDGERIRLAITKAFRAELLLGADQALPEEIQKVTNGITSAVISSILSLTRDEPVP-IEK 60

Query: 98  IQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDAPIAPKLKIMMDDGTLIS 156
           IQD VE  LMQ G+H++ R Y+LYREER   RA +     ++  +   L +   DGT   
Sbjct: 61  IQDLVEKELMQEGYHQVARGYILYREERKRARAFKETAIPANEQVKSTLYVTYPDGTKSP 120

Query: 157 FNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
            N+++++  +E AC+  +++ + + ++ E  K++YDG+   +L  + IFS+R+ IEKEP 
Sbjct: 121 LNTQKMQSKMEHACADFKELCNPQELIEEMLKHLYDGVLFKELNESAIFSARSKIEKEPA 180

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  V AR LL+ +  EV              E+  L+  +F +YI +GV A+ L   +  
Sbjct: 181 YNYVAARLLLQDIYNEVFEQECHP------SEVANLHVSHFEQYIRKGVMAKRLTPELFG 234

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE- 334
           +DL  LA +L   RD  F Y+G+Q LYDRY +H+   RIE PQ F+MRVAMGLAL E E 
Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           +E+RA+EFYN+LS FHF+ STPTLFNSG+ HPQLSSC+L+TV DDL  IF  + +NA L+
Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGG+GNDWT +R  GA IHGTNG +QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLET
Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D+E+F++LRKNTGD+RRRTHDMNTANWIPDLFMKRV + + WTLF+P +  DLHDLY
Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YER A  G+IK+F+ I A+ LWRKM+TMLFETGHPW+TFKDP NIRSPQ 
Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           H GVVHSSNLCTEI LN+S  ETAVCNLGSINL AH   +  D   LA TIRTA+R+LDN
Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDIN +  ++A++SN  HR +GLGLMGFQ AL+   I Y S EAVE AD SME IS+HA
Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA-EVRDELAMNRTSRLPWDELKKRV 753
           I AS ELA+ERG YSS++GS W QG+ PIDSI LL  E +  L M+RTS+  W  ++K +
Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKGYLHMDRTSKKDWSVVRKEI 714

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           +  GMRN N MAIAPTATIA+I G+SQSI+P++  LYVKSN+SG+F V+N +LV +LK+R
Sbjct: 715 QKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKER 774

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           DLW++ M+ +LKY+DGS+  IE+ P+DLK ++ TAFEI+P WLIE ASRRQKWID  QSL
Sbjct: 775 DLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQSL 834

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NLY++ P G+KL  +Y  AW  GLKTTYYLRS++AT VEKSTL      +    +   ++
Sbjct: 835 NLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRSA 894

Query: 934 S-----THSLGIPSSCT-SDTECEVCQ 954
           S          IP SC+ S  ECE CQ
Sbjct: 895 SGSIRVERDSSIPKSCSLSGDECESCQ 921


>gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase, subunit alpha [Planctomyces
           brasiliensis DSM 5305]
 gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 953

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/950 (52%), Positives = 660/950 (69%), Gaps = 32/950 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--VQDIIKNLTEQTVTRLLQHNK 88
           V KR+G + SFD ++I RA+  AF A      S+ +   V  +I+ ++++   ++     
Sbjct: 10  VRKRDGRIASFDMNRIGRAMENAFRAELNLADSQPLDEDVISVIRQISDEVGNQIAPSAS 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH--SKSDAPIAPKLK 146
           S   V +E++QD VE  LM+ GH+++ R Y++YR E + +RA +       + P   +  
Sbjct: 70  SRQGVDVEELQDAVEMLLMKHGHYRVARRYIVYRAEHAKLRALRGEEGFADEGPERVQTN 129

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +DDGTL+ F+  R+   ++ AC GL+D+ S++ +  E  K++YDG++  ++  A+I +
Sbjct: 130 VTLDDGTLVPFDPNRIMTKLQLACRGLEDICSAEDLHEEVLKSIYDGITTKEIYRAMILA 189

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           SR+ IE++P Y KV  R +L+ +  + L +           ++  +Y   F  YI +G+ 
Sbjct: 190 SRSRIERDPAYDKVAGRLMLDVIYHDALGSAPSP------KKLASVYRHQFEHYIIDGIA 243

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           A  L   + DF+L  +A+ L+  RD  F+YLGLQ +YDRY +HI+G RIE PQ F+MRVA
Sbjct: 244 AERLSPGLRDFNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVA 303

Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLA+ E E KE+RA++FYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV DDL  IF
Sbjct: 304 MGLAVNEGEQKEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIF 363

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA L+K++GGLGNDWT +R   AHIHGTNG+SQGVIPFLKV NDTAVAVNQGGKR
Sbjct: 364 KVISDNAKLSKWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKR 423

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+TANWIPDLFMKRV  N  WTLFSP
Sbjct: 424 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSP 483

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV DLHDL GKEFE  Y  YE+ A+ GE+ + RK++AV LWRKMLT LFETGHPWIT+K
Sbjct: 484 DEVPDLHDLTGKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWK 543

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP N+RSPQ H GVVHSSNLCTEI LN+S  ETAVCNLGSINL  H  +   +   L  T
Sbjct: 544 DPSNVRSPQDHCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEET 603

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN +  E+A  +N  HR +G+GLMGFQ AL  + + Y  PEAVE AD
Sbjct: 604 VFTAMRMLDNVIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFAD 663

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSR 743
            SME IS+ AI AS +LA ERG YSS++GS WD+G+ PID++ LL E R + + ++R+S 
Sbjct: 664 RSMEAISYFAILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARGQAIEVDRSSS 723

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD ++K V   GMRNSNCMAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+FT VN
Sbjct: 724 LDWDVVRKSVAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVN 783

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           S LV ELK R LWD  M+  LKY+DG++ +I+R+P D+K+ + TAFE+DP WL+E A+RR
Sbjct: 784 SVLVTELKSRGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARR 843

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKW+D  QSLNLY+  P+GK+L  +Y  AW  GLKTTYYLR+ +AT VEKST+      +
Sbjct: 844 QKWLDMGQSLNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTVDVNKFGI 903

Query: 924 NAVPVTDP-------------------NSSTHSLGIPSSCTSDTECEVCQ 954
               + +                    N    S+   +   ++ +CE CQ
Sbjct: 904 QPRWMKNKSNSSDIRVDRAHRDVIEETNDLPASMANATCDPNNPDCEACQ 953


>gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9768]
 gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11074]
 gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9301]
          Length = 1047

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/TZ1A828/OT]
 gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/TZ1A828/OT]
          Length = 1047

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AIEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L++ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLIDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D/UW-3/CX]
 gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/Jali20/OT]
 gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276]
 gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276s]
 gi|7388066|sp|O84834|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis
            D/UW-3/CX]
 gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/Jali20/OT]
 gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11222]
          Length = 1047

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-EC]
 gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-LC]
          Length = 1053

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 122  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 181

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 182  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 241

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 242  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 301

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 302  IMAARANIEKEPDYAFVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 355

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 356  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 415

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 416  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 475

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 476  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 535

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 536  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 595

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 596  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 655

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 656  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 715

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 716  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 775

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 776  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 835

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 836  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 895

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 896  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 955

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 956  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1015

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1016 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1053



 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 11  QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 70

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 71  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 122

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 123 -SLSVVRRCGTVVHFNPMKISAALEKA 148


>gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis A/HAR-13]
 gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis A/HAR-13]
          Length = 1047

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L++ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLIDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ATCC 17978]
          Length = 885

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/900 (56%), Positives = 649/900 (72%), Gaps = 40/900 (4%)

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            +    +   S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R       ++
Sbjct: 2   VLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARK-----DTN 56

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +   P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+
Sbjct: 57  SNHHPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDI 116

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            T ++ ++RT IE+EPNY  VTAR     LR E+++T                       
Sbjct: 117 ATTMMMATRTRIEQEPNYTYVTARL----LRDELVSTGL----AFLGLPADTAENNALEA 168

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ
Sbjct: 169 FLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQ 228

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ D
Sbjct: 229 LFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGD 288

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAV
Sbjct: 289 DLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAV 348

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  
Sbjct: 349 NQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGE 408

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF+P E  DLHDL G EF   Y  YE  A   +  + +K+ A  LWRKML+MLFETGH
Sbjct: 409 WTLFTPSETPDLHDLTGAEFAERYAYYESVAKE-QNMLHKKVRAKDLWRKMLSMLFETGH 467

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D 
Sbjct: 468 PWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDR 527

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S E
Sbjct: 528 EKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDE 587

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
           AV  ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E   
Sbjct: 588 AVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMF 647

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+S
Sbjct: 648 EVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLS 707

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W+
Sbjct: 708 GEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWI 767

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+
Sbjct: 768 VDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTI 827

Query: 917 KGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
               G LNAV                        + +  T +  +P +C+ D  +CE CQ
Sbjct: 828 N--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 885


>gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70]
 gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70s]
          Length = 1047

 Score =  943 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 630/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EA+E 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAIEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D(s)2923]
 gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis Sweden2]
 gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/150]
 gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/11023]
          Length = 1047

 Score =  943 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 630/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 918

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/934 (50%), Positives = 633/934 (67%), Gaps = 27/934 (2%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRL 83
            + + V KR+  +T F+P +I  AI  AF  V       +     Q II  + E  + ++
Sbjct: 7   EQKISVRKRDKQITPFNPERIKNAISSAFRDVWNLQSYHTLDKAQQVIIGQVFEAVIEKI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                    + +E IQD VE  LM+  H+K+ + Y+LYRE R+  R  +          P
Sbjct: 67  RCEKPFDTPIDVERIQDYVELILMRQEHYKVAKSYILYRENRAKARQQKEEEA------P 120

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY-KNMYDGLSESDLETAL 202
            +++ + +G  ++++ ++L++ ++ +C   + + S   L +     ++D +S   +  A 
Sbjct: 121 AIRVKLINGDSVAYSQEKLKLSLKRSCQDFEPLCSSEELMKAIEPQLFDRISSEQIRQAA 180

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++++LIEKEP Y KV A  LL+K+ RE+ +  +                  F  YI++
Sbjct: 181 ILAAKSLIEKEPAYDKVAANILLQKIYREIESLPFSN----------------FSSYIQK 224

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           GV+A+ LH  ++ FD   L   +++ERD  F Y GLQ LYDRY + I+    E+PQ F+M
Sbjct: 225 GVEAKRLHSDLLGFDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWM 284

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RV+MGLAL ET+K  +AVEFY++LSSF ++ STPTLFNSGT HPQLSSC+L+TV DDL  
Sbjct: 285 RVSMGLALNETDKNSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLND 344

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  + ++A L+K++GG+GNDWT VR   AHI+GTNGKSQGVIPFLKV NDTAVAVNQGG
Sbjct: 345 IFRVISDDAKLSKWAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGG 404

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGA+C YLETWH+D+ EFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV ++  WTLF
Sbjct: 405 KRKGAICCYLETWHLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLF 464

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SPDEV DLHDLYG+ F+  YE+YER+A  G+IK +R   A+ LWRKML+ LFETGHPWIT
Sbjct: 465 SPDEVPDLHDLYGRAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWIT 524

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KDP NIR  Q+H GV+HSSNLCTEI L +S EETAVCNLGS+NL  H    + D   L 
Sbjct: 525 WKDPSNIRGNQKHAGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLE 584

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN +   +A++SN  HR IGLG+MGFQ AL+L+ IPY S EA+  
Sbjct: 585 KTIATAIRMLDNVIDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAF 644

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
           AD SME IS+ AI AS  LA+ERG+Y SFKGS WD G+FP  ++ LL E R  ++ +++ 
Sbjct: 645 ADSSMETISYFAIKASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIKIPIDQC 704

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W  L + ++  GMRNS+ +AIAPTATI+ I GVSQSI+P Y NL+ KSN+SG+FT 
Sbjct: 705 SSRDWKTLLEIIRQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTS 764

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN +LV  LK  +LWD+ M+ +LKYHDGS+  I RIP ++++   TAFE+   WLI  A+
Sbjct: 765 VNHYLVETLKSLNLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAA 824

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            RQKWID  QSLNLYL EPSG+KLD +YR AW +GLKTTYYLR+R+AT VEKSTL     
Sbjct: 825 ARQKWIDMGQSLNLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLDINKF 884

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
            +    + + ++S+        C+  D  CE CQ
Sbjct: 885 DIQPKWMKNKSASSSIAPRQGQCSIDDPTCEACQ 918


>gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 434/Bu]
 gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
 gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2tet1]
 gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis 434/Bu]
 gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
          Length = 1047

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/938 (52%), Positives = 632/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   N-KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
              +    + IE IQD VE  LM  GH+ I + Y+LYRE R+ VR  +    S        
Sbjct: 176  CSQQDRRIDIEKIQDIVEQQLMVVGHYAIAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AFEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L       +     +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYALVAAELLLDVVYKEALG------KSKYAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+M+FETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 921  GKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              +    + + ++S             C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTR 82
           + K   ++KRNG    FD ++I +A+  AF           +   ++  I+++T Q V  
Sbjct: 5   QEKQCTIVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q      +V +E IQD VE  L  +G   + R+Y++YR++R   R             
Sbjct: 65  VVQKITDGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L ++   GT++ FN  ++   +E+A
Sbjct: 117 -SLSVVRRCGTVVHFNPMKISAALEKA 142


>gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
 gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 949

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 521/959 (54%), Positives = 666/959 (69%), Gaps = 45/959 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFM--AVEGKGA----SRSIRVQDIIKNLTEQT 79
           +    VI+RNG    FD SKI+ A+ KAF+  A          S S   ++ ++ LT+  
Sbjct: 6   VGAYMVIRRNGETVPFDASKIASALAKAFLYDAHGNLYRPGVVSLSAAQRERVEQLTQAV 65

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              L +  +S    HIE +QDQVE +LM++G H++ R YVLYRE  S  RA    +    
Sbjct: 66  CDALGRRGES-SAFHIEALQDQVELALMRAGEHEVARGYVLYREMASQKRAPAPVAGRYD 124

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
            I       M +G +  F+      IVE   +GL+ VS+  +  E  +N+Y+   E ++E
Sbjct: 125 HIKS---YRMRNGGVAPFDPSFWIAIVESVVAGLESVSAADLFEEAVRNLYNNAKEEEIE 181

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLL-EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            ALI ++RT IE EP Y K  AR +L  +L  +V        +  T  E+   Y E F R
Sbjct: 182 NALILAARTKIEMEPAYTKAAARLVLALQLGHDVFG------KAITFDELASSYGEAFAR 235

Query: 259 YIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            I+E V A LL + M   FDL  LAN ++ ERD  ++YLG+Q LYDRY LHI+G RIE+P
Sbjct: 236 GIKEAVSAELLADDMTRGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGKRIELP 295

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAF MRVAMGLA  E E+E RA+EFY +LS+F +M STPTLFN+G+   QLSSC+LTT+ 
Sbjct: 296 QAFLMRVAMGLARNEVEREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCYLTTIS 355

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+  L+ENA+L+K++GGLGNDWT VR LG++I GTNGKSQG++PFLKV NDTAVA
Sbjct: 356 DDLEGIYDGLKENALLSKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVNDTAVA 415

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A
Sbjct: 416 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHEGA 475

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP++V DLHDLYG +FE  Y++YE  AD G +K F++  AV LWRKML +LFETG
Sbjct: 476 DWTLFSPNDVPDLHDLYGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGLLFETG 535

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
           HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH       
Sbjct: 536 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADG 595

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D+ KL  TIR A+R+LDNVID+N + + KA+ SN  HR +GLG+MG+Q AL++L I
Sbjct: 596 SVALDHVKLRRTIRIAMRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDALYVLGI 655

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  AVE +D SME I ++A  AS +LA ERG Y S+ GSLW +G+ P DSI LL + 
Sbjct: 656 PFGSEAAVEFSDRSMEAICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSIDLLVQE 715

Query: 733 RDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R E  L ++R+S + WD L++++   GMRNSNC+AIAPTATI+NI GVS S +P +QNLY
Sbjct: 716 RGEGYLDVDRSSSMDWDALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQFQNLY 775

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FT+VN +LV +LK+  +WDE M+SDLK++DGS+  I+R+P D+K  +ATAFE
Sbjct: 776 VKSNLSGEFTLVNEYLVADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARYATAFE 835

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           I+P W +E+ +RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +ATS
Sbjct: 836 IEPSWSVEAGARRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTIAATS 895

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD---------------TECEVCQ 954
           VEKST+    G LNAV    P+S   +     S   D                 C+ CQ
Sbjct: 896 VEKSTVPL--GTLNAVA---PSSQMATQQTTQSSEPDVEGRVCMFRPGDPDFEGCQACQ 949


>gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
 gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
          Length = 949

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/945 (53%), Positives = 646/945 (68%), Gaps = 26/945 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI--RVQDIIKNLTEQTVTRLLQHNK 88
           V KR G    FD S I RAI  AF A      ++ +   ++  I  + E     +     
Sbjct: 10  VTKRGGRTAPFDASLIGRAISNAFRAELNLADNQPLDDEIRMEIPEMVESVANEIASAAS 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ------SHSKSDAPIA 142
           +   V +E IQD VE  LM+ GH++I R Y++YR ER+ +RA +        S+S     
Sbjct: 70  TDAGVEVEKIQDVVEMMLMRRGHYRIARRYIVYRAERAKLRALRGSSDLVEESESIKSTT 129

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETA 201
           P+  +++ DGT + F+  R+   + +AC GL+ D S++ +L E  ++++DG+S  +L  A
Sbjct: 130 PRFHVVLTDGTKVPFDEARILARLSDACRGLEGDCSAEALLEEVMRSIFDGISVEELYRA 189

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I ++RT IE++P Y  V +R +L+ +  + L             E+  LY + F +++E
Sbjct: 190 MILAARTRIERDPAYDTVASRLMLKIIYNDALGNAPSDVN-----ELNQLYVDRFPKFLE 244

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +G+ A+ L   +  FDL  +A  L+ +RD  F+YLGLQ ++DRY LHI G RIE PQ F+
Sbjct: 245 DGIAAKRLTPDLHKFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQYFW 304

Query: 322 MRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           MRV+MGLA++E      RA+EFYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV DDL
Sbjct: 305 MRVSMGLAIQEEGDATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVNDDL 364

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF  + +NA L+K++GGLGNDWT +R   +HI GTNG+SQGVIPFLKV NDTAVAVNQ
Sbjct: 365 DHIFKCVADNAKLSKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAVNQ 424

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGAVC+YLETWH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFM+RV ++A WT
Sbjct: 425 GGKRKGAVCSYLETWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAEWT 484

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP++V DLHDLYG +FE  Y  YER  + GEIK+FR+ISAV LWRKMLT LFETGHPW
Sbjct: 485 LFSPNDVPDLHDLYGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGHPW 544

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           IT+KD  N+RSPQ HVGVVHSSNLCTEI LN+S +ETAVCNLGS+NL  H  + Q D   
Sbjct: 545 ITWKDASNLRSPQDHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDLGM 604

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+RTA+R+LDNVIDIN +   +A+ SN  HR +GLG+MGFQ AL    I YAS +AV
Sbjct: 605 LEETVRTAMRMLDNVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQAV 664

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
           E AD SME IS+ AI AS ELA ERG Y S+ GS WD+G+ PID++ L  + R   + ++
Sbjct: 665 EFADASMEAISYFAILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIPVEVD 724

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           R +RL W  ++  +   GMRNSN MAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+F
Sbjct: 725 RQARLDWQVVRNSIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEF 784

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           T VN  LV++LK  DLWD  M+  LKY+DGS+  IERIPD+LK  + TAFE++P W IE 
Sbjct: 785 TQVNRQLVDDLKAVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTIEC 844

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ RQKWID  QSLNLYL EPSGKKL  +Y  AW  GLKTTYYLR+ +AT VEKST+   
Sbjct: 845 AAHRQKWIDMGQSLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVDVN 904

Query: 920 DGKLNAVPVT----------DPNSSTHSLGIPSSCTSDTECEVCQ 954
              +    +           D   +   +    SC  D +CE CQ
Sbjct: 905 KFGIQPRWMKNASASGDIQVDREPAATMVTPGESCNLDGDCEACQ 949


>gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            caviae GPIC]
 gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            caviae GPIC]
          Length = 1044

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/932 (51%), Positives = 627/932 (67%), Gaps = 15/932 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            V +R+G    F+P KIS A+ KAF A +    +        I +LT + V  +L      
Sbjct: 120  VRRRDGNAVKFNPMKISAALEKAFRATQKNTDTPFQETLAEINDLTNKIVEEILVVCSQE 179

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
              V IE IQD VE  LM  GH+ + + Y+LYRE RS +R ++ +  +   I     ++ +
Sbjct: 180  KTVDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRESKENVATQESIEEVYDVVRE 239

Query: 151  DGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG+    N  +L      AC    +  + + + S  + N Y G+ E+++  A I ++R  
Sbjct: 240  DGSTYQINKAQLTDKFIWACQRFPETTNPQTLASMAFANFYSGIKEAEIVKACIMAARAN 299

Query: 210  IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            IEKEP+YA V A  L + + +E +       + AT  ++     + F  YI  G + R L
Sbjct: 300  IEKEPDYAYVAAELLTDVVYQETMG------KSATDSDLAEAQKQCFKNYILNGEEYR-L 352

Query: 270  HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            +  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR++MGLA
Sbjct: 353  NPRLKEYDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMGLA 412

Query: 330  LKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            L E E +   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  + 
Sbjct: 413  LNEGEDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVIS 472

Query: 389  ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            +NAML+K++GG+GNDWT VR +G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKGA+
Sbjct: 473  DNAMLSKWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAM 532

Query: 449  CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD+V 
Sbjct: 533  CVYLEIWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDDVP 592

Query: 509  DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKDP N
Sbjct: 593  GLHEAYGFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDPSN 652

Query: 569  IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            IR  Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KLA TI  A
Sbjct: 653  IRGAQDHAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETISIA 712

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            +R+LDN+ID+N +   +A  +N +HRA+GLG MGFQ AL+ L+I YAS EAVE AD+S E
Sbjct: 713  IRILDNIIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKSAE 772

Query: 689  FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
             I+++AI +S  LA+ERG YSS+KGS WD+G  P+D++ LL E R E  + M+ + R  W
Sbjct: 773  LIAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRKDW 832

Query: 747  DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
              +++ +K  GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N +L
Sbjct: 833  TPVREAIKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYL 892

Query: 807  VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            + +LK+  +WD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRRQKW
Sbjct: 893  IEQLKKLGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKW 952

Query: 867  IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            ID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS        +   
Sbjct: 953  IDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFTDVNKRGIQPR 1012

Query: 927  PVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
             + + ++ST            C+ +  CE CQ
Sbjct: 1013 WMKNKSASTSIVVERTKSTPVCSLEEGCESCQ 1044



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +IS+A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKNYTIVKRNGMFVPFNQDRISQALEAAFRDTRSLENNSPLPEDLENSISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R    H        
Sbjct: 65  VMQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIVYRDQHKEQREGSWHC------- 117

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             + +   DG  + FN  ++   +E+A
Sbjct: 118 --VLVRRRDGNAVKFNPMKISAALEKA 142


>gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            felis Fe/C-56]
 gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis
            Fe/C-56]
          Length = 1045

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/936 (52%), Positives = 631/936 (67%), Gaps = 16/936 (1%)

Query: 28   GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             V V++R+G +  F+P KIS A+ KAF A           +   I NLT + V   L   
Sbjct: 117  SVSVMRRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEINNLTNKIVEETLAKC 176

Query: 88   KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK- 146
                 + IE IQD VE  LM +GH+ + + Y+LYRE RS +R  +        I  ++  
Sbjct: 177  SREQTIDIEAIQDIVETQLMIAGHYDVAKNYILYREARSRIREHKQEIAVQEEIVEEVYD 236

Query: 147  IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  DGT    N  +L      AC       +   +    + N Y G+ ES++  A I +
Sbjct: 237  VVKSDGTTYQINKAQLTEKFVWACRRFPKTTNPHTLADMAFANFYSGIKESEIVLACIMA 296

Query: 206  SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            +R  IEKEP+YA V A  LL+ + +E +       +     ++   + +YF +YI +G +
Sbjct: 297  ARANIEKEPDYAYVAAELLLDVVCQEAIG------KSIMDADLVEAHKQYFKQYILDGDQ 350

Query: 266  ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             R L+  + ++DL  LA  L   RD  F Y+G+Q LYDRY     G R+E  Q F+MRV+
Sbjct: 351  YR-LNPRLKEYDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQIFWMRVS 409

Query: 326  MGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            MGLAL E E +   A+ FYNLLSSF +  +TPTLFNSG RH QLSSC+L+TV DDL  I+
Sbjct: 410  MGLALNEGEDKTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIY 469

Query: 385  GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
              + +NAML+K++GG+GNDWT VR  G+ I GTNGKS GVIPF+KVANDTAVAVNQGGKR
Sbjct: 470  KVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVAVNQGGKR 529

Query: 445  KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            KGA C YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSP
Sbjct: 530  KGATCVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGTWTLFSP 589

Query: 505  DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            D+V  LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETGHPWITFK
Sbjct: 590  DDVPGLHEAYGFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETGHPWITFK 649

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            DP NIRS Q H GVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N   D + L  T
Sbjct: 650  DPSNIRSAQDHAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDIDEEMLGET 709

Query: 625  IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            I  A+R+LDNVIDIN +  ++A  +N THRA+GLG+MGFQ AL+ L+I YASPEAVE AD
Sbjct: 710  ISIAIRILDNVIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASPEAVEFAD 769

Query: 685  ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTS 742
            +S E I+++A+ +S  LA+ERG YSS+KGS WD+G  PID+I LL E R  D+L M+ + 
Sbjct: 770  KSSELIAYYALLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDKLLMDTSC 829

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            R  W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ 
Sbjct: 830  RKDWAPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIP 889

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            N +L+ +LKQ  LWD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASR
Sbjct: 890  NVYLIEKLKQLGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASR 949

Query: 863  RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            RQKW+D  QS+NLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS +      
Sbjct: 950  RQKWLDMGQSVNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRG 1009

Query: 923  LNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
            +    + + ++ST            C+ +  CE CQ
Sbjct: 1010 IQPRWMKNKSASTSIVVERTRETPVCSLEEGCESCQ 1045



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           K +   ++KRNG    F+  +I +A+  AF         +     ++  I ++T Q V  
Sbjct: 5   KEQHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDTSPLPKDLEKSISSITRQVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  SG   + R Y++YR++  + R    H        
Sbjct: 65  VVQKIREGQVVTVERIQDMVENQLYVSGMQDVARNYIIYRDQHKERRKGSWH-------- 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +M  DG L+ FN  ++   +E+A      ++   VL +   +  + L+   +E  L
Sbjct: 117 -SVSVMRRDGNLVRFNPMKISAALEKAFRATLKITD--VLLQEILSEINNLTNKIVEETL 173

Query: 203 IFSSRTLI 210
              SR   
Sbjct: 174 AKCSREQT 181


>gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila
            psittaci RD1]
 gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci 6BC]
          Length = 1045

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/933 (51%), Positives = 630/933 (67%), Gaps = 16/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            VI+R+G    F+P KIS A+ KAF A +         +   I  LT + V  +L      
Sbjct: 120  VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCSPE 179

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA-PIAPKLKIMM 149
              + IE IQD VE  LM  GH+ + + Y+LYRE RS +R  +    +   P+     ++ 
Sbjct: 180  KTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDPVEEVYDVVK 239

Query: 150  DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT  S N  +L      AC    +     ++    + N Y G+ ES++  A I ++R 
Sbjct: 240  SDGTTYSINKSQLIDKFIWACQRFPETTDPHVLADMAFANFYSGIKESEIALACIMAARA 299

Query: 209  LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G   R 
Sbjct: 300  NIEKEPDYAYVAAELLMDVVYQETMG------KTATDSDLAEAQKQCFKNYILNGETYR- 352

Query: 269  LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
            L+  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MGL
Sbjct: 353  LNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGL 412

Query: 329  ALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
            AL E + +   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  +
Sbjct: 413  ALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVI 472

Query: 388  QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKGA
Sbjct: 473  SDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGA 532

Query: 448  VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD+V
Sbjct: 533  TSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDV 592

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKDP 
Sbjct: 593  PGLHEAYGIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPS 652

Query: 568  NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
            NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL  TI  
Sbjct: 653  NIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETISI 712

Query: 628  AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            A+R+LDNVID+N +  ++A  +N +HRA+GLG+MGFQ AL+ L+I YASPEAVE AD+S 
Sbjct: 713  AIRILDNVIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADKSS 772

Query: 688  EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
            E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ + R  
Sbjct: 773  ELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCRKD 832

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N +
Sbjct: 833  WNPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVY 892

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            L+N+LK+  +WD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRRQK
Sbjct: 893  LINKLKELGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQK 952

Query: 866  WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            W+D  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS +      +  
Sbjct: 953  WVDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGIQP 1012

Query: 926  VPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              + + ++ST            C+ +  CE CQ
Sbjct: 1013 RWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 27/237 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
            +Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R    H        
Sbjct: 65  AVQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDQHKEQREGSWHC------- 117

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDL- 198
             + ++  DG+ + FN  ++   +E+   A   + DVS + +LSE    + + + E  L 
Sbjct: 118 --VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSE-INGLTNKIVEEILG 174

Query: 199 -----ETALIFSSRTLIEKEP---NYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
                +T  I   + ++EK+     +  V   ++   L RE  + + +  Q+    +
Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYI---LYREARSRIRENKQQIDAQK 228


>gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
 gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 821

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 524/821 (63%), Positives = 635/821 (77%), Gaps = 25/821 (3%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
            +R+  +V EAC GL   S++ V++E  +  Y G++ ++LE ALI ++RT +E +P+Y+ 
Sbjct: 1   MERIRKVVAEACQGLPGASAETVIAEATRGFYPGITPAELELALIMAARTFVETDPDYSY 60

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V+AR LL+KLRRE LT +   P +ATH +M   YPEY   +I  G++   L   + DFDL
Sbjct: 61  VSARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHLTPELADFDL 120

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L   L+ ERD  F YLGLQ LYDRYFLH  G+R E+PQAF MRVAMG+AL E ++  R
Sbjct: 121 DRLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVALHEDDRNAR 180

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A+EFY LLSSF FMCSTPTLFN+GTR PQLSSCFLTTV DDL  IF A+  NA+L+KYSG
Sbjct: 181 AIEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISNNALLSKYSG 240

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           GLGNDWTPVRGLGAHI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID
Sbjct: 241 GLGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHID 300

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEFLDLRKNTGD+RRRTHDMNTANW+PDLF++RV  +A WTLFSPDEV DLHD YG++F
Sbjct: 301 IEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPDLHDRYGEDF 360

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
             AY  YER ADRGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GV
Sbjct: 361 ARAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGV 420

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           VHSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D ++L  T+RTAVR+LDNVID+
Sbjct: 421 VHSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAVRMLDNVIDV 480

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N +TI +A+++N  HR IGLGLMG+Q AL  L +P ASPEAVE ADESME +S++AI AS
Sbjct: 481 NLYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEAS 540

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELKKRVKTIG 757
            +LA ERG+YSSF+GSLW +G+ PIDS+ LLAE  R +L ++RT RL WD L+++V+T G
Sbjct: 541 ADLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDRTQRLDWDTLREKVRTTG 600

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MAIAPTATIANI GV+ SI+P Y+NLYVK+NMSGDFTVVN  LV +LK+R LWD
Sbjct: 601 MRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSLVRDLKERGLWD 660

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M++ LK HDGS+G I+R+P+DLK ++ATAFEIDP+WL+++ASRRQKWIDQAQSLNLY+
Sbjct: 661 EEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKWIDQAQSLNLYM 720

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------- 930
            EPSG+KLD +YR+AW  GLKTTYYLRS+ AT VEKSTL+G DG+LNAV           
Sbjct: 721 AEPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTLRGTDGRLNAVTPVAVSAPSPS 780

Query: 931 -----------------PNSSTHSLGIPSSCTSDTECEVCQ 954
                            P     +         D ECE CQ
Sbjct: 781 PTPAPRPAAAPPRSAAGPAPDLTAEAAAFCAVDDPECEACQ 821


>gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            pecorum E58]
 gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pecorum E58]
          Length = 1047

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/939 (51%), Positives = 637/939 (67%), Gaps = 18/939 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-Q 85
            +GV +I+R+G    F+P KIS A+ KAF A               I  LT + V  ++ Q
Sbjct: 116  RGVLIIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLEINELTLKIVEEIMAQ 175

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--AP 143
            H   A  +HIE IQD VE  LM +G + + + Y+LYRE R   R  +    +        
Sbjct: 176  HVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYILYREARMRARENKVSEVNSECFVEDE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++ +D T    N   LE     AC+   +  SSK +    + N++ G+ ES++ +A 
Sbjct: 236  VYRVVREDQTEYLLNKAELEKRFTWACARFPETTSSKTLADMAFANLFSGVKESEVVSAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L E + +E +         A   ++   +  YF +YI E
Sbjct: 296  IMAARANIEKEPDYAFVAADLLHEVVYQETVGL------SAVSSKLTDAHRRYFKQYILE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   R L+  + ++DL  LA  L   RD  F Y+G+Q L+DRYF    G R+E  Q F+M
Sbjct: 350  GENYR-LNPQLKEYDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFWM 408

Query: 323  RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            RV+MGLAL E  EK   A+ FY+LLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL 
Sbjct: 409  RVSMGLALNEGKEKTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLQ 468

Query: 382  GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             I+  + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTAVAVNQG
Sbjct: 469  HIYKVISDNALLSKWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQG 528

Query: 442  GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            GKRKGA C YLE+WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTL
Sbjct: 529  GKRKGAACVYLESWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWTL 588

Query: 502  FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            FSPD+V  LH+ YG EFE  YE YE++ + GEI+++RK+ A  LWRKML+ML+ETGHPW+
Sbjct: 589  FSPDDVPGLHEAYGLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPWL 648

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            TFKDP NIR+ Q HVGVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N + +  KL
Sbjct: 649  TFKDPSNIRAAQDHVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAKL 708

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A TIR AVR+LDNVID+N + I +A ++N THRA+GLG MGFQ AL+  +I YAS EAVE
Sbjct: 709  AETIRIAVRILDNVIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAVE 768

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMN 739
             ADE  E I++HAI +S ELA+ERG Y+S+KGS WD+G+ PID+I LL + R E  + M+
Sbjct: 769  FADEVAEIIAYHAILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLMD 828

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             + R  W+ +++ V+  GMRNS+ M IAPTATI+NI G++QSI+P+Y+NL+VKSN+SG+F
Sbjct: 829  TSCRKDWEPVREAVRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGEF 888

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            T+ N +L+ +LK   LWDE M+ DLKY DGS+  IERIP++LKK+  TAFEI+P WLIE 
Sbjct: 889  TIPNVYLIRKLKSLGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIEC 948

Query: 860  ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ASRRQKWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS     
Sbjct: 949  ASRRQKWIDMGQSLNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKSFTDIN 1008

Query: 920  DGKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
               +    + + ++ST          + C+ +  CE CQ
Sbjct: 1009 KRGIQPRWMKNMSASTSIIVERTAKNAVCSMEEGCESCQ 1047



 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 30/269 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF       + A     ++  I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEEDAPLPKDLEKSISDITSKVVGE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +++      +V +E IQD VE  L  +G   + R+Y++YR++  + R        ++P  
Sbjct: 65  VIEKISQGQVVTVERIQDIVESQLYVNGLQDVARDYIVYRDQHKEQR--------ESPWR 116

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACS---GLQDVSSKIVLSETYKNMYDGLSESDLE 199
             L I+  DGT + FN  ++   +E+A      +  ++    + E    +   + E  + 
Sbjct: 117 GVL-IIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLE-INELTLKIVEEIMA 174

Query: 200 TAL-------IFSSRTLIEKE---PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
             +       I + + ++EK+     +  V   ++   L RE    +  +  K +    +
Sbjct: 175 QHVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYI---LYREA--RMRARENKVSEVNSE 229

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           C   +   R + E     LL+++ ++   
Sbjct: 230 CFVEDEVYRVVREDQTEYLLNKAELEKRF 258


>gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila
            pneumoniae LPCoLN]
          Length = 1044

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/933 (50%), Positives = 627/933 (67%), Gaps = 17/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            +I+R+GG   F+P KIS A+ KAF A               I +LT + V  +L  +   
Sbjct: 120  IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVLSLHGEG 179

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148
              +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P      + 
Sbjct: 180  -AINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238

Query: 149  MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I ++R
Sbjct: 239  KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMAAR 298

Query: 208  TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G + R
Sbjct: 299  ANIEREPDYAFIAAELLTSSLYEETLGCNSQDPN------LSEIHKKHFKEYILNGEEYR 352

Query: 268  LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
             L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MG
Sbjct: 353  -LNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411

Query: 328  LALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  
Sbjct: 412  LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471

Query: 387  LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG
Sbjct: 472  ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531

Query: 447  AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSPD+
Sbjct: 532  AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFKDP
Sbjct: 592  VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651

Query: 567  CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL  TI 
Sbjct: 652  SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKETIS 711

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +DE 
Sbjct: 712  IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771

Query: 687  MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
             E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ +S+ 
Sbjct: 772  SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
             W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+
Sbjct: 832  DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SRRQ
Sbjct: 892  YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951

Query: 865  KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            KWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      + 
Sbjct: 952  KWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011

Query: 925  AVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
               + + ++ST  +        C+ +  CE CQ
Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           + K   ++KRNG    F+  +I +A+  AF         +     +++ I  +T + V  
Sbjct: 5   EEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +L       +V +E IQD VE  L  SG   + R+Y++YR++R   R            +
Sbjct: 65  VLAKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAERG---------NSS 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             + I+  DG    FN  ++   +E+A
Sbjct: 116 SIIAIIRRDGGSAKFNPMKISAALEKA 142


>gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae CWL029]
 gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae J138]
 gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae AR39]
 gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae TW-183]
 gi|7388068|sp|Q9Z6S5|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae
            CWL029]
 gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pneumoniae AR39]
 gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138]
 gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1044

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/933 (50%), Positives = 627/933 (67%), Gaps = 17/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            +I+R+GG   F+P KIS A+ KAF A               I +LT + V  +L      
Sbjct: 120  IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVLS-LHGE 178

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148
              +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P      + 
Sbjct: 179  EAINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238

Query: 149  MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I ++R
Sbjct: 239  KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACIMAAR 298

Query: 208  TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G + R
Sbjct: 299  ANIEREPDYAFIAAELLTSSLYEETLGCSSQDPN------LSEIHKKHFKEYILNGEEYR 352

Query: 268  LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
             L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MG
Sbjct: 353  -LNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411

Query: 328  LALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  
Sbjct: 412  LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471

Query: 387  LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG
Sbjct: 472  ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531

Query: 447  AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSPD+
Sbjct: 532  AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFKDP
Sbjct: 592  VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651

Query: 567  CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N++ D +KL  TI 
Sbjct: 652  SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLKETIS 711

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +DE 
Sbjct: 712  IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771

Query: 687  MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRL 744
             E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ +S+ 
Sbjct: 772  SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
             W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+
Sbjct: 832  DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SRRQ
Sbjct: 892  YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951

Query: 865  KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            KWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      + 
Sbjct: 952  KWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011

Query: 925  AVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
               + + ++ST  +        C+ +  CE CQ
Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           + K   ++KRNG    F+  +I +A+  AF         +     +++ I  +T + V  
Sbjct: 5   EEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +L       +V +E IQD VE  L  SG   + R+Y++YR++R   R            +
Sbjct: 65  VLAKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAERG---------NSS 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             + I+  DG    FN  ++   +E+A
Sbjct: 116 SIIAIIRRDGGSAKFNPMKISAALEKA 142


>gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            abortus S26/3]
 gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila
            abortus S26/3]
          Length = 1045

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/933 (51%), Positives = 631/933 (67%), Gaps = 16/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            VI+R+G    F+P KIS A+ KAF A +         +   I  LT + V  +L      
Sbjct: 120  VIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCSPE 179

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-IMM 149
              + IE IQD VE  LM  GH+ + + Y+LYRE RS +R  +    +   +  ++  ++ 
Sbjct: 180  KTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDLVEEVYDVVK 239

Query: 150  DDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT  S N  +L      AC    +    +++    + N Y G+ ES++  A I ++R 
Sbjct: 240  SDGTTYSINKSQLIDKFIWACQRFPETTDPQVLADMAFANFYSGIKESEIALACIMAARA 299

Query: 209  LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G   R 
Sbjct: 300  NIEKEPDYAYVAAELLMDVVYQEAMG------KTATDSDLAEAQKQCFKNYILNGETYR- 352

Query: 269  LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
            L+  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MGL
Sbjct: 353  LNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSMGL 412

Query: 329  ALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
            AL E + +   A+ FYNLLS+F +  +TPTLFNSGTRH QLSSC+L+T+ DDL  I+  +
Sbjct: 413  ALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAHIYKVI 472

Query: 388  QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKGA
Sbjct: 473  SDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGA 532

Query: 448  VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD+V
Sbjct: 533  TSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPDDV 592

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKDP 
Sbjct: 593  PGLHEAYGTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKDPS 652

Query: 568  NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
            NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL  TI  
Sbjct: 653  NIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETISI 712

Query: 628  AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            A+R+LDNVID+N +  ++A  +N +HRAIGLG+MGFQ AL+ L+I YASPEAVE AD+S 
Sbjct: 713  AIRILDNVIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADKSS 772

Query: 688  EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
            E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ + R  
Sbjct: 773  ELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCRKD 832

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N +
Sbjct: 833  WTPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVY 892

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            L+++LK+  LWD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRRQK
Sbjct: 893  LISKLKELGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQK 952

Query: 866  WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            WID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS        +  
Sbjct: 953  WIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGIQP 1012

Query: 926  VPVTDPNSST----HSLGIPSSCTSDTECEVCQ 954
              + + ++ST            C+ +  CE CQ
Sbjct: 1013 RWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045



 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 27/237 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTR 82
           K K   V+KRNG    F+  +I +A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKHYTVVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR+   + R    H        
Sbjct: 65  VIQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDHHKEQREGSWHC------- 117

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDL- 198
             + ++  DG+ + FN  ++   +E+   A   + DVS + +LSE    + + + E  L 
Sbjct: 118 --VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSE-INGLTNKIVEEILG 174

Query: 199 -----ETALIFSSRTLIEKEP---NYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
                +T  I   + ++EK+     +  V   ++   L RE  + + +  Q+    +
Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKNYI---LYREARSRIRENKQQIDAQK 228


>gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella
           flavida DSM 17836]
 gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella
           flavida DSM 17836]
          Length = 806

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/802 (62%), Positives = 628/802 (78%), Gaps = 9/802 (1%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
             + N +RL ++V EA +GL  V  +++L+ET  + YDG+ + ++E AL+ ++RT +E+E
Sbjct: 13  TAALNVERLRLMVAEASAGLDAVDPELILTETLGSCYDGIPQHEVELALVMAARTYVEQE 72

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y++  AR LL+++RREVL  V+ +P++A+  +M+  Y  YF RY+  G++A LL   +
Sbjct: 73  PQYSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLLDHEL 132

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
             FDL  LA  ++ ERD  F +LGLQ LYDRY LHI+ +R E+PQAFF+RVAMG+ALKE 
Sbjct: 133 ASFDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMALKEH 192

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++E RA+EFY LLSSF FM STPTLFN+GT  PQLSSCFLTTV DDL GIF  ++ NA+L
Sbjct: 193 DREARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRNNALL 252

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           AKYSGGLGNDWTP+RG+GA I GTNG+SQGV+PFLK+ANDTA+AV+QGGKRKGAVCAYLE
Sbjct: 253 AKYSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVCAYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWH+DVE+FL+LRKNTGD+RRRTHDMNTANW+PDLF++RV  +AGWTLFSPDEV  LHDL
Sbjct: 313 TWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPGLHDL 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  F  AYE YER ADRGEI+VFR++ AV LWR+MLT+LFETGHPWITFKD CN+RSPQ
Sbjct: 373 YGAAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNLRSPQ 432

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           QH GVVHSSNLCTEITLN++ +ETAVCNLGS+NL+AH      D   L  T+RTAVR+LD
Sbjct: 433 QHDGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAVRMLD 492

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +T  +++++N  HR +GLGLMGF  AL  L +PYAS  AV  AD SME +S+H
Sbjct: 493 NVIDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQLSYH 552

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKR 752
           AI AS +LA ERG Y ++ GSLW QG+ PIDS+ LL E R  +L ++ ++ L WD L+ +
Sbjct: 553 AIEASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDTSTTLDWDALRAK 612

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  GMRNSN +AIAPTATI+NICGVSQSI+P+Y NL+VKSNMSG+FTV N +LV +LK 
Sbjct: 613 VRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLVADLKA 672

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LWD+ M+ DLKYHDG +  IERIP DL+ ++ATAFEIDP WL+ +ASRRQKWIDQ+QS
Sbjct: 673 RGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWIDQSQS 732

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNLY+ EPSGK LD +YR AW  GLKTTYYLRS+SAT VEKSTL+G DG+LNAVPV    
Sbjct: 733 LNLYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKSTLRGTDGRLNAVPVEPVA 792

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +             D +CE CQ
Sbjct: 793 AV--------CAIDDQDCEACQ 806


>gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase, subunit alpha [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 882

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 521/860 (60%), Positives = 621/860 (72%), Gaps = 35/860 (4%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R        D    P       DG        R+E +V EAC+ L  VS++ VL+E  + 
Sbjct: 24  RGWSRCMTLDVEAVPASVRSSKDGNP-PAAVDRIEHVVAEACARLTGVSAEKVLTEARRG 82

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
            Y G+S++++E AL+ ++R+ +E +P+Y+ V AR LL+KLRRE LT +   P  A   EM
Sbjct: 83  FYPGISDAEVELALVMAARSFVEVDPDYSYVAARLLLDKLRREALTFISGAPDAAGQSEM 142

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y  Y   Y+  G+    L  ++  FDL  L   L+ ERD  F +LG+Q LYDRYFLH
Sbjct: 143 GERYAAYLAAYVGRGIDLGQLDPALAKFDLARLGAALRPERDEQFTFLGIQTLYDRYFLH 202

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
            +  R E+PQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLFNSGT   QL
Sbjct: 203 SDEVRYELPQAFFMRVAMGLALNEDDREARAIEFYELLSSFDFMASTPTLFNSGTVRAQL 262

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCFLTTV DDL  IF  +  NAML+KYSGGLGNDWTPVRGLG+HI GTNGKSQGV+PFL
Sbjct: 263 SSCFLTTVGDDLQAIFHGISNNAMLSKYSGGLGNDWTPVRGLGSHIRGTNGKSQGVVPFL 322

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+ANDTAVAVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGD+RRRTHDMNTANW+PDL
Sbjct: 323 KIANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDL 382

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV Q   WTLFSPDEV DLHD YG EF  AY +YE +A  G IKV + + AV LWR+
Sbjct: 383 FMQRVEQGGSWTLFSPDEVPDLHDKYGAEFAEAYAHYEAEAAAGRIKVSKTLPAVDLWRR 442

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPWITFKDP N+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGS+NL 
Sbjct: 443 MLTMLFETGHPWITFKDPSNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLA 502

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            H   +  D ++L  T+RTAVR+LDNVID+N +TI +A+++N  HR +GLGLMGFQ AL 
Sbjct: 503 QHVGPDGLDAERLRRTVRTAVRMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALF 562

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L  P+AS  AV  ADESME IS++AI AS+ELA ERG+Y SF+GSLW +GV PIDS+ L
Sbjct: 563 KLRTPFASDGAVSFADESMELISYYAIEASMELAAERGSYESFEGSLWSRGVLPIDSLRL 622

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           LAE RD +L M+R   L WD L++RVKT GMRNSN MAIAPTATIANI GVSQSI+P Y+
Sbjct: 623 LAESRDGDLDMDRGETLDWDSLRERVKTTGMRNSNVMAIAPTATIANITGVSQSIEPVYR 682

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLYVKSNMSGDFTVVN +LV +LK R LWD+ M+S LK HDGS+G I+R+P DLK ++AT
Sbjct: 683 NLYVKSNMSGDFTVVNPYLVRDLKARGLWDDDMVSALKMHDGSLGAIDRVPADLKALYAT 742

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFE+DP WL+++ SRRQKWIDQAQSLNLY+  PSG+KLD +YR+AW  GLKTTYYLRS+S
Sbjct: 743 AFEVDPEWLVDAGSRRQKWIDQAQSLNLYMAAPSGRKLDSLYRRAWRSGLKTTYYLRSQS 802

Query: 908 ATSVEKSTLKGVDGKLNAVPV---------------------------------TDPNSS 934
           AT VEKSTLKG DG+LNAV                                         
Sbjct: 803 ATHVEKSTLKGTDGRLNAVAATPAAPVASPAPSPAPAPSPAPSPSPNPQPVTGGAADEDE 862

Query: 935 THSLGIPSSCTSDTECEVCQ 954
              +   +    D ECE CQ
Sbjct: 863 FEIIDGQACSIDDPECEACQ 882


>gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
 gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
          Length = 945

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/953 (50%), Positives = 644/953 (67%), Gaps = 26/953 (2%)

Query: 14  AFPSLAYPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           +FP       +   G+ QV KR+G +  FD ++I  AI KA  A  G  A+  +    + 
Sbjct: 7   SFPQALATSSDSSAGLKQVRKRDGRLARFDLARIGTAITKAVTAELGAAAAHELPAH-VA 65

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +++T+ T  R+ +       + +E IQD+VE  LM +G H++ R YVLYRE ++  R A 
Sbjct: 66  QSITDYT-ERVARWCDLQEQLAVESIQDEVERVLMTAGEHRVARRYVLYRESQAHKRKAS 124

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS--KIVLSETYKNMY 190
           +            ++ +  G L +     LE  + +AC  L   +     + ++  +++ 
Sbjct: 125 AT-----------QVRLASGELTALPINALEHWIAQACE-LHGQAPQAAAITADIVRSLP 172

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP--QKATHHEM 248
             ++ + L  A I + R+ +E EP +  V A+ LL++   ++L   +        +  E 
Sbjct: 173 TEVTPTQLFDATILALRSRVELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSER 232

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           +  Y  YF  Y+   V    LHESM+D++L  +A  +  ERD    YLG+Q LYDRYFL 
Sbjct: 233 RAGYQRYFPEYVRAAVARGQLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLA 292

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
             G R+E+PQ F+MR+AMGLAL E  K +R  EFY+LLS  HF  +TPTLFN+GT HPQL
Sbjct: 293 HEGLRVELPQIFWMRIAMGLALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQL 352

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+L+TV DDL GIF A+Q+NA+L+K++GGLGNDWT +R LGA I GT GKSQG++PFL
Sbjct: 353 SSCYLSTVEDDLVGIFKAIQDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFL 412

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV +D AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LR+ TGD+RRRTHD++TANWIPDL
Sbjct: 413 KVVSDAAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDL 472

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV     WTLFSP+EV DLH  YG+ FE  Y +YE+ AD G IK+FR++SAV LWRK
Sbjct: 473 FMKRVLARDTWTLFSPNEVPDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRK 532

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLT+LFETGHPW+T+KDP NIRSPQ HVGVVH+SNLCTEI LN+S+EETAVCNLGS+NL 
Sbjct: 533 MLTLLFETGHPWVTWKDPSNIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLG 592

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           AH  +   D   L  TIRTAVR+LDNVID+N +   +A  +N  HR IGLGLMGFQ AL+
Sbjct: 593 AHITDGVLDLAMLERTIRTAVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALY 652

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + I YAS  AV+ ADESME IS+ A+ AS ELA+ERG Y+SF GS WD+G  PID+I L
Sbjct: 653 AMQISYASDRAVQFADESMEAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDL 712

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           + + R  ++ + RT++L W+ +++ ++  G+RNSN +AIAPTATI+NI GVSQSI+P+Y+
Sbjct: 713 VEQERGIKIDVPRTAQLNWEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYR 772

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLYVKSN+SG+FT VN +LV ELK   LW E M+  LKY+DG +  I  IP ++K+ + T
Sbjct: 773 NLYVKSNLSGEFTQVNEWLVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRT 832

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFEI+P WLIE A+RRQKWID  QSLNLYL  PSG+KLD +Y  AW +GLKTTYYLR+ +
Sbjct: 833 AFEIEPRWLIECAARRQKWIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLA 892

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHS------LGIPSSCTSDTECEVCQ 954
           AT VEKST+      +    + + ++S            P  C    +CE CQ
Sbjct: 893 ATQVEKSTIDVNRFGIQPRWMKNKSASGDIQIDRTLASAPEVCNLGGDCEACQ 945


>gi|221124254|ref|XP_002159508.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit [Hydra magnipapillata]
          Length = 846

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/841 (59%), Positives = 630/841 (74%), Gaps = 14/841 (1%)

Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
           M+ GHH+I R YVLYRE R+  RA Q    ++AP AP + ++ D+G  +  +  +L+  +
Sbjct: 1   MRGGHHEIARAYVLYRERRTQERAKQ--VATEAPAAPVIHVI-DNGQRVPLDLAQLQFRI 57

Query: 167 EEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           E ACSGL  DV +  +L+ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L 
Sbjct: 58  ETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAARTLIEKDPDYTYATARLLF 117

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             + REVL       +     +MQ  Y +YF  +I+ G+ A LL E +  FDL  L + L
Sbjct: 118 HTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQFDLKRLGSAL 171

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           K  RD  F+YLGLQ LYDRYFLH   +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +
Sbjct: 172 KAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDREARAIEFYEV 231

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT
Sbjct: 232 LSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWT 291

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+L
Sbjct: 292 RVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLEL 351

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G EFE AY  Y
Sbjct: 352 RKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAY 411

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E +A RGEIK  R + A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLC
Sbjct: 412 EEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLC 471

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           TEITLN+S  ETAVCNLGS+NLL H  +   D++KL  TI TA+R+LDNVIDIN + ++K
Sbjct: 472 TEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNVIDINYYAVKK 531

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD+SME IS++A  AS +LA+ER
Sbjct: 532 ARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAYWASTDLARER 591

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G Y S+KGSLWD+GV P D++ +LA  R   + ++R+S L W+ L+ ++   GMRNSNC+
Sbjct: 592 GKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWNALRNKIAADGMRNSNCV 651

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTV+NS+LV +LK+  LWD+ M+ DL
Sbjct: 652 AIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDL 711

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           K+ DGS+  I+R+P ++K+++ATAFE++  WL+E+A+RRQKWIDQAQSLN+Y+   SGKK
Sbjct: 712 KHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSLNIYMAGASGKK 771

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           LD  Y+ AWL GLKTTYYLR+ SAT  EKST+      L+A+        +   G PSS 
Sbjct: 772 LDETYKLAWLRGLKTTYYLRTMSATHAEKSTV---TAGLDALQFRHRPDQSVEAGKPSSV 828

Query: 945 T 945
            
Sbjct: 829 D 829


>gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 782

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/781 (66%), Positives = 610/781 (78%), Gaps = 3/781 (0%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S+  VL E  +N +DG+S  +L  A I ++R ++E EPNY++VTAR LL++LRRE LT +
Sbjct: 2   SADAVLDEVRRNSFDGISADELAIAQIMAARIMVEAEPNYSQVTARLLLDRLRREALTYL 61

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
              P  A   +M+  Y  YF  Y+  GV+   L   +  FDL  L   L  ERD +F +L
Sbjct: 62  AGLPDDADQEQMRERYAPYFRDYVARGVELGQLDPELASFDLDRLGAALLPERDMSFGFL 121

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH +G+R E+PQAFFMRVAMGLAL+E ++E RAVEFY LLSSF FMCSTP
Sbjct: 122 GLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLALREDDREARAVEFYRLLSSFDFMCSTP 181

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT  PQLSSCFLTTV DDL+GIF ++  NAML+KY+GGLGNDWTPVRG+GAHI G
Sbjct: 182 TLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISNNAMLSKYAGGLGNDWTPVRGIGAHIRG 241

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT
Sbjct: 242 TNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 301

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PD FM+RV  +  WTLFSPDE  DLHDLYG  F   Y  YER A+RGEIKV
Sbjct: 302 HDMNTANWVPDEFMRRVEADGTWTLFSPDETPDLHDLYGTAFAERYRAYERAAERGEIKV 361

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +R++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E
Sbjct: 362 YRQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSRDE 421

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGS+NL  H   +  D+++L  T RTAVR+LDNVIDIN +TI +A++SN  HR I
Sbjct: 422 VAVCNLGSVNLARHVTADGIDHERLERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPI 481

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGF  AL    IP +S  AVE AD SME IS+HAISAS +LA ERG Y SF+GSLW
Sbjct: 482 GLGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSLW 541

Query: 717 DQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            QGV PIDS+ LL + RD  + ++RT    W  L++RV+ +GMRNSN MAIAPTATIANI
Sbjct: 542 SQGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMRNSNVMAIAPTATIANI 601

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           CGV QSI+P Y+NLYVKSNMSGDFTVVN  LV +LK   LWDE M++DLK+HDGS+  I 
Sbjct: 602 CGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPIS 661

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP +LK+++ATAFE++P WL+E+A+RRQKWIDQAQSLNLY+  PSG+KLD +YR AW  
Sbjct: 662 RIPGELKELYATAFEVEPRWLVEAAARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWRQ 721

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD--PNSSTHSLGIPSSCTSDTECEVC 953
           GLKTTYYLRS SAT VEKSTL+G DGKLNAVP T   P   T ++   +    D +CE C
Sbjct: 722 GLKTTYYLRSTSATHVEKSTLRGTDGKLNAVPTTPVAPVVPTAAVDGAACSVDDPDCEAC 781

Query: 954 Q 954
           Q
Sbjct: 782 Q 782


>gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora viridis DSM 43017]
 gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 815

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/804 (63%), Positives = 621/804 (77%), Gaps = 5/804 (0%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
               +R+  +V EA +GL D S++ VL+E  +N+YDG+   +L  A I ++RTL+E+EPN
Sbjct: 12  PIPWERVHRVVREAVAGLPDTSAEAVLAELKRNVYDGIRADELALAQIMAARTLVEREPN 71

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y+ V AR LL+ LR E  + +  +P++  + EM   Y +YF  Y+  G+  +LL E +  
Sbjct: 72  YSFVAARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLLDEELAA 131

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKET 333
           FDL  LA  L+ ERD     LGLQ LYDRY L     G R E+PQAFFMRVAMGLA++E 
Sbjct: 132 FDLDILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMGLAIREP 191

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           E++ RAVEFY LLS+  FM STPTLFN+GTR PQLSSCFLTTV DDL  IF   + NA+L
Sbjct: 192 ERDTRAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGYRNNALL 251

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           AKYSGGLGNDWTPVRGLGAHI GT GKSQGV+PFLK+ANDT VAVNQGGKRKGA CAYLE
Sbjct: 252 AKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGAACAYLE 311

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV  +A WTLFSPDEV DLHDL
Sbjct: 312 TWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEVPDLHDL 371

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  F   Y  YE+ AD G+I+VFR++SA  LWR+MLTMLFETGHPWITFKDPCN+RSPQ
Sbjct: 372 YGTAFAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPCNLRSPQ 431

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           QH GVVHSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D + L  T+RTAVR+LD
Sbjct: 432 QHAGVVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRTAVRMLD 491

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVIDIN +T+ +A++SN  HR +GLGLMGF  AL  L IP AS EAVE AD SME +S+H
Sbjct: 492 NVIDINFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYH 551

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDELKK 751
           AISASVELA ERGAY SF GSLW +G+ P+DS+ LLAE R  DEL ++ +S L WD L++
Sbjct: 552 AISASVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLDWDALRE 611

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           RV+T+GMRNSN +AIAPTATI+NICGV QSI+P + NL+VKSNMSG+FTVVN +LV +LK
Sbjct: 612 RVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPYLVRDLK 671

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +R LWDE M+ +LK HDG +G IER+P++LKK++ATAFE D  WL+++A+RRQKWIDQAQ
Sbjct: 672 RRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQKWIDQAQ 731

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           SLNLYL EPSG+ LD +YR AW  GLKTTYYLRSR+AT VEKSTL+G DG+LNAV    P
Sbjct: 732 SLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNAVAPAVP 791

Query: 932 NSSTHSLGIPSSC-TSDTECEVCQ 954
                + G  ++C   D +CE CQ
Sbjct: 792 AVPADASGAAAACRIDDPDCEACQ 815


>gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
 gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
          Length = 839

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/839 (60%), Positives = 627/839 (74%), Gaps = 55/839 (6%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
            GL+DV +  +L++T +N++DG+++ ++ TALI S+RT+IEK+PNY++V+AR LL+ +R 
Sbjct: 1   EGLEDVDADKILNDTLRNVFDGVAKKEVATALIMSARTMIEKDPNYSQVSARLLLDSMRE 60

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E LT +      AT  EMQ  YPEYF  YI   V+  LL   M +FDL  L   L  ERD
Sbjct: 61  EALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELLDGEMHNFDLERLGQALLPERD 120

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
             F YLGLQ LYDRYF+H + G R E+PQAFFMRVAMGLA+ E ++E+RA+EFY LLSSF
Sbjct: 121 QGFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGLAINEVDREERAIEFYTLLSSF 180

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            FM STPTLFNS T  PQLSSC+LTTVPDDL GIF A++++AML+K++GGLGNDWT VR 
Sbjct: 181 DFMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVKDDAMLSKFAGGLGNDWTRVRA 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLE+WH+D+EEFL+LRKNT
Sbjct: 241 LGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLESWHLDIEEFLELRKNT 300

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP++V DLHDL GK+FE AY  YE +A
Sbjct: 301 GDDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVDDLHDLVGKKFEKAYTAYEAKA 360

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           D GEIK+F+++ AV LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEIT
Sbjct: 361 DSGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEIT 420

Query: 590 LNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           LN+S  E AVCNLGS+N+  H     + D  KL  TI+TA+R+LDNVID N +++ +A++
Sbjct: 421 LNTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKTAMRMLDNVIDYNYYSVPQARR 480

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR +GLG+MGFQ AL+   + Y S EAVE AD +ME +S++AIS+SV+LA+ERGAY
Sbjct: 481 SNIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAMEAVSYYAISSSVDLAEERGAY 540

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           SSF GSLW +G+ PIDSI +LAE R +   ++R+  + WD L++RV+  GMRNSNCMAIA
Sbjct: 541 SSFPGSLWSRGILPIDSIDILAEHRGDFLQVDRSQTMDWDSLRQRVRESGMRNSNCMAIA 600

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV ELK R+LWD+ M++DLKY+
Sbjct: 601 PTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVKELKARNLWDDVMVNDLKYY 660

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           DGS+  IERIPDDL++I++TAFEID  WL+E+ SRRQKWIDQ QSLNLY+ EPSGKKLD 
Sbjct: 661 DGSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQKWIDQGQSLNLYMSEPSGKKLDN 720

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLK------------------------------ 917
           +Y+ AW  GLKTTYYLRS  AT VEK+  +                              
Sbjct: 721 LYKLAWARGLKTTYYLRSMGATHVEKTASRPAPGSGGQQGGSSDGTASGQSQEGQAGQGG 780

Query: 918 -------GVDGKLNAVPVTDPNSSTHSLG--------------IPSSCTSD-TECEVCQ 954
                  G   +      T P S+T S+                P +C+ D  +CE CQ
Sbjct: 781 VSASAPTGASAQPPQAQATAPVSATASVSSDAFDNISSETAPEAPQACSIDNPDCEACQ 839


>gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 819

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/814 (55%), Positives = 588/814 (72%), Gaps = 9/814 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G L+  +  R+   ++ AC GL +     + +E  +++YD ++   + +A+I
Sbjct: 12  RVRVVSPEGGLVPLDPDRVRRHLQHACRGLPECDPDELANEVVRSLYDRVTPEQIRSAMI 71

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++R  IE++P Y KV +R +LE++ +E    V  +       E+   Y E F RY+   
Sbjct: 72  LAARARIERDPAYDKVASRLMLEQIYQESWGWVPSEA------ELAATYREMFPRYVHAC 125

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A  L E +  FDL  LA+ L+ ERD    Y+GLQ LYDRY L + G R+E PQ F+MR
Sbjct: 126 ISAGRLSEELARFDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMR 185

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLAL+E +   RA +FY+LLSS  F+ +TPTLFNSGT HPQLSSC+L+TV DDL  I
Sbjct: 186 VAMGLALREDDPNARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHI 245

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  + +NA L+K++GGLGNDWT VR  GA I GT+GKSQGVIPFLK+ NDTAVAVNQGGK
Sbjct: 246 FKVIGDNAKLSKWAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGK 305

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVC YLE WH+D EEFL+LRKNTGD+RRRTHDM+TA+W+PDLFM+RV +   WTLFS
Sbjct: 306 RKGAVCCYLEPWHLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFS 365

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+EV DLH+LYG+ FE  Y  YER A+ G+++  +++ A  LWRKML+ML+ETGHPWI F
Sbjct: 366 PNEVPDLHELYGRAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAF 425

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           KDP NIRS Q HVGV+HSSNLCTEI L +S EETAVCNLGSINL+ H + +  D  KLA 
Sbjct: 426 KDPSNIRSAQDHVGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAE 485

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTAVR+LDNVIDIN +   +A++SN  HR IGLG+MGF  AL  L IPYASP+AVE +
Sbjct: 486 TVRTAVRMLDNVIDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFS 545

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742
           D++ME IS+HAI AS ELA ERG Y S++GS W +G+ PID+I LL   R  +L M+RT+
Sbjct: 546 DQTMELISWHAIMASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGDLEMDRTA 605

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           RL W  +++ V   G+RNS  MAIAPTATI+NI GVSQSI+P Y+NL+VKSN+SGDFT+V
Sbjct: 606 RLDWGPVREAVARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIV 665

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+  LW + M+  +KY+DGSI  IE IPD++K ++ TA EIDP+WLIE ASR
Sbjct: 666 NPYLVEDLKRLGLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASR 725

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKW+D  QSLN+Y+ EPSGKKL  IY  AW  GLKTTYYLR+  AT+VEK+++      
Sbjct: 726 RQKWVDMGQSLNIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFG 785

Query: 923 LNAVPVTDPNSSTHS--LGIPSSCTSDTECEVCQ 954
           +    +   ++S+    +   S+C    +CE CQ
Sbjct: 786 VQPRWMRSRSASSRVRIVREGSTCQLGEDCEACQ 819


>gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1062

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/938 (46%), Positives = 603/938 (64%), Gaps = 35/938 (3%)

Query: 26   IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            +K V++I+R+  V  +   KI  A+ +AF+++E + +  ++ V  I+    + T    ++
Sbjct: 151  LKNVRLIRRDRKVVPWKQEKIEIAVRRAFLSLE-QNSDPAVEVAAIVTERIQATGQAFVE 209

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDAPIAPK 144
                     IE++QD V+  LM+ GH K+   YVLYRE+R   R  ++    +D      
Sbjct: 210  ---------IEEVQDIVQEELMKQGHFKVAAHYVLYREQRRAHREQEALQLATDTEQDSM 260

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +   DG+   ++   L+  +E A  GL   ++   +  E  ++++D +SE+DLE  + 
Sbjct: 261  VVVKKTDGSTYFWDGIDLKKRIEFASIGLDLCLNHDEIEIELRRSIFDEISEADLEKTIT 320

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++RTLIE++ ++AK  AR  L  + +E L     +        ++  + + F  Y+  G
Sbjct: 321  LNARTLIEQDADFAKFAARIKLSYMYQETLGWDIVRDGIGA---IKTFHQKKFKEYVRHG 377

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL----HINGSRIEMPQA 319
            +    L+  + ++D+  LA  L    D  F+YLG+Q LYDRY +         RIE PQ 
Sbjct: 378  IMIGRLNPKLKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQF 437

Query: 320  FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            F+MRVAMGL   E E+E +A   Y L  S  F  STPTLFN+GT H QLSSC+L  V D 
Sbjct: 438  FWMRVAMGLFHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDS 497

Query: 380  LYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI    + +NA L+K++GGLG  WT VRG G++I GTNG+SQG++PFLK+ ND  +AV
Sbjct: 498  IEGIMQRGIADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAV 557

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRR HDMNTANW+PDLFMKR+     
Sbjct: 558  NQGGKRRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQM 617

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            W+ F   EV DLHD YG +FE  Y  YE +A +GEI   +++ A+ +W++ML+M+FETGH
Sbjct: 618  WSFFRTSEVPDLHDSYGADFEKKYTEYEAKAAKGEIW-SKEVPAIEVWKRMLSMIFETGH 676

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
            PWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S EETAVCNLGSI L  H   +   D
Sbjct: 677  PWITFKDPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNID 736

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +DKL  T++TA+R LDNVIDIN +  E AK +N  HR IGLG+MG Q+ L+L   P+AS 
Sbjct: 737  HDKLRETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQ 796

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736
            EAVE  DE ME ++++AI AS +LA ERG Y S+KGS WD+G+ P D++ LL + R  E+
Sbjct: 797  EAVEFNDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEV 856

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             + R  +L W  ++++V   GMRNSN MAIAPTATI+NI G S  I+P Y+NL+VKSN+S
Sbjct: 857  DVPRGGKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLS 916

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+F ++N  LV +LK R LW+  M  +LKY DG +  I+ IP DLK  + TAF +D  WL
Sbjct: 917  GEFIILNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWL 976

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            + +A+RRQKWIDQ+QS+NL+L  P  K L  +YR AW  GLKTTYYLR+  A+++EK+T+
Sbjct: 977  VLAAARRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV 1036

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G   +L  +           +G  ++      CE CQ
Sbjct: 1037 -GAKKELRGI-----------VGGKAAPPEPEVCESCQ 1062



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 75/198 (37%), Gaps = 18/198 (9%)

Query: 38  VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---IKNLTEQTVTRLLQHNKS--ALI 92
             +FD S+I   I  A   V     +  +   +    +  +  Q V +L   +       
Sbjct: 50  EATFDLSEIVDTIGNALANVLLSKNNTEVFTDENRQWVCTVARQVVDKLESKSPETLESR 109

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDG 152
           V + ++ D +E +L+ +  + + +  +L   +R  V       K+       ++++  D 
Sbjct: 110 VGLSELYDLIENTLVDNNAYDVAKS-MLINRQRKLVADKTIGLKN-------VRLIRRDR 161

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
            ++ +  +++E+ V  A   L+  S   V            +        I   + ++++
Sbjct: 162 KVVPWKQEKIEIAVRRAFLSLEQNSDPAVEVAAIVTERIQATGQAFVE--IEEVQDIVQE 219

Query: 213 EP---NYAKVTARFLLEK 227
           E     + KV A ++L +
Sbjct: 220 ELMKQGHFKVAAHYVLYR 237


>gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
 gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
          Length = 1080

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/942 (45%), Positives = 602/942 (63%), Gaps = 29/942 (3%)

Query: 28   GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             +++I+RNG V  +  SKI  A+ K+F+++       S    D+ + +T++       +N
Sbjct: 153  SIRLIRRNGQVVPWSESKIEIAVRKSFLSL----HLDSGPAMDVARAVTDRL------NN 202

Query: 88   KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-K 146
                 ++IED+QD V+  LM+ GH K+   Y+LYR  R+ +R     ++ D      +  
Sbjct: 203  SGQAFINIEDVQDTVQEELMRQGHFKVAESYILYRAHRTRLRDESGETEVDETQQESMIV 262

Query: 147  IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +  ++G    ++   L+  +E A  GL+  +S+  + +E  +++Y  +   DL+  +I +
Sbjct: 263  VTEENGENTFWDGVDLKRRIEFATIGLELTLSNDEIETELRRSLYPEMKREDLQKTIILN 322

Query: 206  SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            ++ LIE++ ++A+   R LL  +  EVL        +    +++  +      Y++  V+
Sbjct: 323  AKALIERDADFARFAGRVLLSYIYEEVLDW---DIVRDGVEQLKEAHRRGLKTYLKRAVE 379

Query: 266  ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN----GSRIEMPQAFF 321
               +H  ++++DL  L+  L    D  F+YLG+Q LYDRY +         R+E+PQ F+
Sbjct: 380  IERVHPKLLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFW 439

Query: 322  MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +RVAMGL   E  ++E   +  YNL  S  F  STPTLFNSGT H QLSSC+L  V D +
Sbjct: 440  IRVAMGLFHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSI 499

Query: 381  YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
               +   + +NA L+K++GGLG  WT VRG G  I GTNG+SQGVIPFLK+ ND  VAVN
Sbjct: 500  ESIMHRGIADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVN 559

Query: 440  QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
            QGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRRTHDMNTANWIPDLFMKR+     W
Sbjct: 560  QGGKRRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDW 619

Query: 500  TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            TLF  +E  DLHDLYGK FE  Y  YE  A+RGE+   +K+ A+ LW+ ML M+FETGHP
Sbjct: 620  TLFRSNETPDLHDLYGKAFEDRYCEYEAMAERGELF-GKKVPAIELWKSMLRMIFETGHP 678

Query: 560  WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDY 618
            WITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S EETAVCNLGS+ L +H   +   D+
Sbjct: 679  WITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDH 738

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL  T+  AVR LDNVIDIN +  E AK +N  HR IGLG+MG Q+AL +  I +AS  
Sbjct: 739  EKLRETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQA 798

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737
            AVE  DE ME I+++A  AS +LA E G YS++KGS WD+G+ P D++ +L   R +E+ 
Sbjct: 799  AVEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVV 858

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            + R  ++ W+ L+ ++   GMRNSN +AIAPTATI+NI G S  I+P+Y+NL+VKSN+SG
Sbjct: 859  VPRAGKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSG 918

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            DF V+N  LV +LK R LWD+ M+  LKY DG +  I+ IP DL++ + TAF I+  + I
Sbjct: 919  DFIVLNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFI 978

Query: 858  ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            ++A+RRQKWIDQ+QS+NL+L EP  K L  +YR AW  GLKTTYYLR+  A+++EK+T+ 
Sbjct: 979  DAAARRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGASNIEKATVS 1038

Query: 918  GVDGKLNAVPVTDPNSSTHSLGIPSSCT-----SDTECEVCQ 954
                         P    ++     +C+     +  ECE CQ
Sbjct: 1039 VKKEVRGRAGDATPAKKEYTDAEVKACSLEAMMNGGECEACQ 1080



 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 30/187 (16%)

Query: 35  NGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVH 94
           NGG   FD ++I+  I  A           S +  DI  +  ++ V  + +     L   
Sbjct: 48  NGGERDFDLAEIADTIGAA-----LTDLLLSRQENDIFTDHNQKFVATVAESVGKVLAEQ 102

Query: 95  IE----------DIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           IE          DI   +E +L+++  H + +         S V A    ++S       
Sbjct: 103 IEQGRELKLSAHDIDLLIEKALIENDAHDVAK---------SLVFARNHGNESLERPPVS 153

Query: 145 LKIMMDDGTLISFNSKRLEMIVEE------ACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           ++++  +G ++ ++  ++E+ V +        SG     ++ V      +    ++  D+
Sbjct: 154 IRLIRRNGQVVPWSESKIEIAVRKSFLSLHLDSGPAMDVARAVTDRLNNSGQAFINIEDV 213

Query: 199 ETALIFS 205
           +  +   
Sbjct: 214 QDTVQEE 220


>gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
 gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
          Length = 846

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/825 (55%), Positives = 584/825 (70%), Gaps = 24/825 (2%)

Query: 152 GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           G     +S+ +  I+EE C G   +V+   +        Y G+S+++L  ALI ++RT I
Sbjct: 24  GATSPSDSQAVLRILEEVCQGFGPEVNVDQLFQSVNATTYAGISDAELWQALIMATRTNI 83

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E EP Y  V AR LL  L  E L+T   +  +   ++   +Y  Y   Y+E GV    L 
Sbjct: 84  EFEPAYTFVAARLLLISLYNEALSTT--QATRVGLNDAASIYKNYLSDYVEFGVSKGYLD 141

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
               ++DL+ LA+ +  ERD  F Y GLQILYDRYFL  N  R E+PQ  +MRVAMGLA 
Sbjct: 142 PRFQEYDLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAF 201

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E  KE RA+EFY LLS F+F  +TPTLFN+GT HPQLSSC+LTTV DDL+ IF  +Q+N
Sbjct: 202 NEEHKEARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDN 261

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A+L+K++GGLGNDWT VR LGAHI GTNG SQG+IPFLKV NDTAVAVNQGGKRKGAVCA
Sbjct: 262 ALLSKWAGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCA 321

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           Y+E WH+D+EEFLDLRKNTGDDRRRTHDM+TA WI DLFMKRV +N  WTLFSPD VSDL
Sbjct: 322 YIENWHLDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDL 381

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HDLYGK FE  YE YER  + G+I  +R++SA+ LWRKMLT LFETGHPWITFKDP N+R
Sbjct: 382 HDLYGKAFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVR 441

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ H GVVHSSNLCTEI LN+S++ETAVCNLGSINL AH  + + ++++L  T+RTAVR
Sbjct: 442 SPQDHAGVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVR 501

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVIDIN +  ++A+ +N  HR +GLGLM FQ AL+ L + YAS  A+E AD SME I
Sbjct: 502 MLDNVIDINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAI 561

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           S++AI AS ELA E G Y S++GS WD+G+ PIDSI +L E R  ++ M+R+  L WD++
Sbjct: 562 SYYAILASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQKIDMDRSMTLDWDKV 621

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  VK  GMRNSN MAIAPTATI++I GVSQSI+PSY+NLYVKSN+SG+FT++NSFLV++
Sbjct: 622 RTAVKQNGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDD 681

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+ ++WD   +  LKY+DGS+  +  +P+++++ + TAF+I+P WLI  ASRRQKWID 
Sbjct: 682 LKRLEIWDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDM 741

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------------ 917
            QS++LYL  PSGKKL  +Y+ AW  GLKTTYYLR+ +AT VEKST+             
Sbjct: 742 GQSIDLYLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMK 801

Query: 918 --------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                    V+ +  A             G  + C    +CE CQ
Sbjct: 802 NSSPSSNIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846


>gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 762

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/758 (56%), Positives = 546/758 (72%), Gaps = 6/758 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMR 759
           DS  +L E R E  ++++    L W  ++ RV+  G+R
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIR 762


>gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 794

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/820 (36%), Positives = 456/820 (55%), Gaps = 39/820 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C GL    V    V       +YDG++  +L+   
Sbjct: 1   MLVLKRDGRRESVKFDKITSRIERLCYGLDMNYVDPTSVAKRVIDGLYDGVTTEELDHLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L ++          K+  + M+ LY     +    
Sbjct: 61  AETAASMTTKHPDYATLAARIAVSNLHKKT--------SKSFANTMKRLYTYVDPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++   + +F   +   L + + Y+RD+ ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GENASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV+ G+   + +    A+E YNL+S   F  +TPTLFNSGT  PQLSSCFL T   D
Sbjct: 170 MLMRVSCGIHSGDIDA---AIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIDGIYETLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A WI DLFMKRV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D YGK+FE  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 DWSLFCPHEAPGLADCYGKDFEALYEKYEKEGRAR-----KTIKAQELWFAILEAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S Q+++G + SSNLCTEI   +S EE AVCNL S+ L     N +FD
Sbjct: 402 TPYMLYKDAANRKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL      A + L+ +ID+N + + +A++SN  HR IGLG+ G   A  LL +P+ S 
Sbjct: 462 HQKLYDVTYVATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESD 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A++AS +LA++ G Y +FKGS   +G+F  D  G+         
Sbjct: 522 EAKQLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPA------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W+ LK+ VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L + +LWD+ M + L   +GS+ NI  IP ++K ++ TA+EI    LI
Sbjct: 633 EFVVVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLI 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + ++ R  +I Q+QSLN+++ E +  KL  ++  AW  GLKT  YYLR++SA +  + T+
Sbjct: 693 DMSADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTV 752

Query: 917 KGVDGKLNAVPVTDP---NSSTHSLGIPSSCTSDTECEVC 953
           +       A   TD    ++   +  +  S  +   CE C
Sbjct: 753 EKQAEVQLAPGTTDQSIVDAEKKAKDMACSLDNPEGCESC 792


>gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb03]
          Length = 797

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/824 (34%), Positives = 445/824 (54%), Gaps = 44/824 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ +S  +  +       + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 110 GRPAPMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAIGIHGDDVE---RVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+       
Sbjct: 522 SPEAKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TL-----KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K  D  +  V       +  S    SS  +   C +C
Sbjct: 752 TVDQEQLKVADTNVARVNGAMKKRAAVSASYTSSIENPESCLMC 795


>gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1109

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/955 (43%), Positives = 591/955 (61%), Gaps = 42/955 (4%)

Query: 28   GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
              ++I+RNG V S++P+KI  A+ KAF++VE      +   + + + LT Q +       
Sbjct: 169  PTKIIRRNGQVVSWNPNKIELAVSKAFVSVE----MGTTHAKAVAEALTHQMIEE----- 219

Query: 88   KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP------- 140
             +   +HIE +QD VE  LM+ GH K  + Y+LYR  R+D R   + S +D         
Sbjct: 220  -AKQFIHIEQVQDLVEEQLMRQGHFKAAKAYMLYRALRADSRERDAKSAADISAPELPVD 278

Query: 141  --IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESD 197
                  + + + D   I ++   L+  ++ A  GL   +S   + S   +++   +S   
Sbjct: 279  DGQQEMIMVRISDKETILWDGLDLQRRIDFAMMGLDLCISRAEIESSLRRSLATDISLDH 338

Query: 198  LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
            L+  +I +++ L+ ++ ++A+  AR LL  +  EVL        +     +Q  +   F 
Sbjct: 339  LKQTIILNAKALMARDADFARFAARILLSYIYEEVLGW---DIVRDGIGSLQTFHRRAFR 395

Query: 258  RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING----SR 313
            R ++ GV+   ++  ++DFDL  LA+ L    D  F+YLG+  LYDRY +         R
Sbjct: 396  RNLQRGVEIDRINAKLLDFDLDKLADALDPAADMDFDYLGIHTLYDRYLIIDKKTKPAKR 455

Query: 314  IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            +E PQ F+MRVAMGL ++E +  ++ +  Y +  S  F  STPTLFNSGT H QLSSC+L
Sbjct: 456  LETPQLFWMRVAMGLFVREEDPTEKVIALYRMYKSRRFCSSTPTLFNSGTLHSQLSSCYL 515

Query: 374  TTVPDDLYG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              V D++   +   + ENA L+K++GGLG  WT VRG G++I GTNG+SQGVIPFLK+ N
Sbjct: 516  YKVDDNIESIMIRGIAENAFLSKWAGGLGGSWTAVRGTGSYIKGTNGESQGVIPFLKLHN 575

Query: 433  DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            D  VAVNQGGKR+G+ CAYLETWH D+ +FLDLRKN GD+RRRTHDMNTANW+PDLFMKR
Sbjct: 576  DQLVAVNQGGKRRGSGCAYLETWHNDIVDFLDLRKNVGDERRRTHDMNTANWVPDLFMKR 635

Query: 493  VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +   + WTLF  +E  DLH+LYG+ FE  Y  YE  A  G++ + ++I A+ LW+ ML  
Sbjct: 636  MEARSHWTLFRANETPDLHELYGQAFEKRYLEYEAMAAEGKV-LGKQIPAIDLWKSMLKA 694

Query: 553  LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            +FETGHPWITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S +ETAVCNLGS+ L  H  
Sbjct: 695  IFETGHPWITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSKDETAVCNLGSVILENHLD 754

Query: 613  N-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                 D+ KL  T+R AVR LDNVIDIN +  + AK +N  HR IGLG+MG Q +L+   
Sbjct: 755  EAGNIDHTKLRETVRMAVRALDNVIDINFYPTDAAKTANTRHRPIGLGVMGLQYSLYRKG 814

Query: 672  IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            +P+AS EAV+  DE ME ++++A  AS +LA E G YS++ GS W +G+ P D++ LL +
Sbjct: 815  LPFASKEAVDFNDEVMEAVAYYAYEASSDLAAELGKYSTYPGSKWSRGLLPQDTVDLLEK 874

Query: 732  VRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             R E + + R  ++ W  +++++   GMRNSN +AIAPTATI+NI G S  I+P + N +
Sbjct: 875  ERGEPVDVVRGGKMDWSPVREKIAKQGMRNSNVLAIAPTATISNIMGSSPCIEPLFTNNF 934

Query: 791  VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             KSN+ G++ V+N +LV +LK+RDLW   +   LKY DG +  ++ IP DLK+ +ATAF 
Sbjct: 935  TKSNLGGNYVVLNPYLVKDLKKRDLWTNEVAERLKYFDGELAAMDEIPADLKRKYATAFS 994

Query: 851  IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            +D  +++++A+RRQKWIDQ+QS+NL+  +   + L  +YR AW  GLKTTYYLR++ A+S
Sbjct: 995  VDWAYVLDAAARRQKWIDQSQSVNLWCPDTDMRTLSHMYRAAWRKGLKTTYYLRTKGASS 1054

Query: 911  VEKSTLK-----------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +E ST +                 +   V                 +  +CE+CQ
Sbjct: 1055 IEGSTTQVQTDIRGVVAQTAAAVADKAKVDADEYKQFLAEARRKAQAGEDCEMCQ 1109



 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAF---------MAVEGKGASRSIRVQDIIKNLTEQT 79
           ++V  R G    FD ++I+  I  A             +    +   RV+     + ++ 
Sbjct: 44  LKVRVR-GEHRDFDLAEIAETIGGALTDLLLSRNQDETDIFTPANQKRVKVFSLQVAQEL 102

Query: 80  VTRLLQHNKSAL----IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             R  ++ +        +  ++I   +E  L++   H + R  +  R +R +  +    +
Sbjct: 103 HERAKRNAEKVGDELLSLTAQEIYHAIEHVLVKQNAHDVARSVIA-RRQRLESMSDTEAN 161

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                + P  KI+  +G ++S+N  ++E+ V +A
Sbjct: 162 APVGLLVPT-KIIRRNGQVVSWNPNKIELAVSKA 194


>gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 792

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/819 (36%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C GL    V    V  +  + +YDG++ S+L+   
Sbjct: 1   MYVIKRDGRSESVKFDKITARIEKLCYGLNPDLVDPIDVARKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +  +        K+    M  LY     +    
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTV--------KSFSETMSLLYHYIDPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + +    + + L + + Y+RDF+F+Y G + L   Y L +NG   E PQ 
Sbjct: 110 GKPAPLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFKTLEKSYLLKLNGKIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+   + E     ++ Y+LLS   F  +TPTLFN+GT  PQ+SSCFL T+  D
Sbjct: 170 LFMRVAVGIHKHDIE---SVIKTYDLLSERWFTHATPTLFNAGTPKPQMSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  GA+I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGAYISGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV +F+DLRKN G +  R  D+  A W+PDLFMKRV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LFSPDE   L + +G+ FE  YE YER+         + + A  LW  +L    ETG
Sbjct: 347 EWSLFSPDEAPGLAECHGEAFEKLYEQYEREGRAR-----KIVKAQDLWFAILDAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +  N +FD
Sbjct: 402 TPYLLYKDAANGKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYVDNGEFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL          L+ +ID N + +++A+ SN  HR +GLG+ G      L+ +P+ S 
Sbjct: 462 HQKLFDITYQVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILMRMPFESE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A ++  +  E I F A++AS +LA + G Y SFKGS   QG F  D   +  +      
Sbjct: 522 AAKQLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFDLWNVKPD------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W+ L+K +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN  L+ +L +  LW+  M + +   +GSI +I  IP D+K+++ T +EI    +I
Sbjct: 633 EFVIVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVWEIKMRNII 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++AT   K T+
Sbjct: 693 DMAADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAATQAVKFTV 752

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIP--SSCTSDTECEVC 953
           +   GK N  PV      +    IP  + C+ +  C  C
Sbjct: 753 ENQAGK-NMEPVIPAKIESVPDDIPTGAVCSMEEGCITC 790


>gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
 gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
          Length = 787

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/815 (34%), Positives = 447/815 (54%), Gaps = 36/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+T  
Sbjct: 1   MYVLKRDGRQEKVHFDKITSRIQKLCYGLNMDFVDPTKITMKVINGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +KA    M+ LY     +  + 
Sbjct: 61  AETAATMTVKHPDYATLAARIAISNLHKET--------KKAFTDVMEDLYNWVNPKTNQH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF + Y G++ L   Y L I+G   E PQ   M
Sbjct: 113 SPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + 
Sbjct: 173 RVALGIHYEDLDA---AIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKQCALISKSAGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLD RKNTG + +R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D +G+EFE  YE YE+          R + A  +W  ++    ETG+P+
Sbjct: 350 LMCPHECPGLEDCWGEEFEKLYEGYEKAGKGR-----RTVKAQQVWYAIIEAQTETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI +  +   +  +D++
Sbjct: 405 MLYKDACNSKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDGTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL        R L+ +ID+N + + +A+ SN  HR IG+G+ G      L+  P+ S EA
Sbjct: 465 KLKEVTVVITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPFESEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS E+A+E G Y +++G    +G+F  D   +           
Sbjct: 525 QHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK++VK  G+RNS  +A  PTA+ A I G ++SI+    N+Y +  +SG+F
Sbjct: 576 -TDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +  LW+E M + +  ++GS+ NIE IP+ ++ ++ T +EI    +I+ 
Sbjct: 635 QVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQKTVIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+R A++  + T+  
Sbjct: 695 AADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQFTVD- 753

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K      T          +  S  +  EC +C
Sbjct: 754 ---KSKLAQSTKAEKEKQLEAMVCSLENKDECLMC 785


>gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae]
          Length = 794

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/824 (34%), Positives = 443/824 (53%), Gaps = 45/824 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      YI  
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYINP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             K      S   +++       L + + Y+RDF + + G + L   Y L I+G   E P
Sbjct: 108 KNKKPAPMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRV++G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEA 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFEALYERYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +IDIN + + +AK SN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I   A++AS +LA++ G Y S++GS   QG+   D         
Sbjct: 520 FDSPEAKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RSILQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD--TECEVCQ 954
           + T+     K+    V   N+S         C+ +    C +CQ
Sbjct: 750 QFTVDQEALKVADTNVARANASFRKRAKVLQCSIENKEACLMCQ 793


>gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus]
 gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus]
          Length = 790

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/818 (35%), Positives = 458/818 (55%), Gaps = 39/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M  LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMDDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +  +D  L     L + + Y+RDF++ Y G + L   Y L IN    E PQ 
Sbjct: 110 GKHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT  P+LSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKNDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V R + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRRVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+++G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQRLNQQIFETIYYGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    W  LK+++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----SDLWDWKALKEKIAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +R LW+E M + +  H+GSI NI  IP DLK+++ T +EI    +
Sbjct: 632 GEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T
Sbjct: 692 LKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   +        ++     +   +  S  +  EC +C
Sbjct: 752 LNK-EKLREREKASEEEKERNKAAMVCSLENRDECMMC 788


>gi|296479831|gb|DAA21946.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
          Length = 791

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/818 (35%), Positives = 460/818 (56%), Gaps = 38/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE YE++       V + I A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYERYEKEGR-----VRKVIKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K       +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|109107703|ref|XP_001113010.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Macaca mulatta]
          Length = 792

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 460/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK+ +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        +   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|311263375|ref|XP_003129662.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Sus scrofa]
          Length = 793

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/818 (35%), Positives = 458/818 (55%), Gaps = 36/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D  L     L + + Y+RDF++ Y G + L   Y L I+G   E PQ 
Sbjct: 110 GKHSPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE YE+     +  V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYERYEK---NRKGHVRKVVKAQQLWYAIIESQTETG 403

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 404 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 463

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 464 DFTKLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFES 523

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 524 PEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP------ 577

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 578 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 633

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 634 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 693

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 694 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 753

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K       +     ++  +  S  +  EC +C
Sbjct: 754 LNKEKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 791


>gi|311263373|ref|XP_003129661.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Sus scrofa]
          Length = 791

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/818 (35%), Positives = 459/818 (56%), Gaps = 38/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D  L     L + + Y+RDF++ Y G + L   Y L I+G   E PQ 
Sbjct: 110 GKHSPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YERQ       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYERQGH-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFTKLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K       +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|73988079|ref|XP_534027.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           1 [Canis familiaris]
          Length = 792

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/819 (35%), Positives = 460/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHEEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TELWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 790


>gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
 gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus]
          Length = 791

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/818 (35%), Positives = 459/818 (56%), Gaps = 38/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE YE++       V + I A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYERYEKEGR-----VRKVIKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK+++   G+RNS  +A  PTA+   I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K       +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Oryctolagus cuniculus]
          Length = 792

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYSYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTE+   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++G    +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb18]
          Length = 881

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/806 (35%), Positives = 438/806 (54%), Gaps = 39/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ +S  +  +       + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 110 GRPAPMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAIGIHGDDVE---RVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+       
Sbjct: 522 SPEAKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGI 940
           T+     K+    V   N +      
Sbjct: 752 TVDQEQLKVADTNVARVNGAMKKRAA 777


>gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus]
 gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus]
 gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus]
 gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus]
 gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus]
 gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus]
          Length = 792

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/819 (36%), Positives = 460/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D    +   L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus]
          Length = 792

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/819 (36%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D    +   L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
 gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
          Length = 1117

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/802 (34%), Positives = 433/802 (53%), Gaps = 39/802 (4%)

Query: 145  LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
            + +   DG        ++   + + C GL    V    +  +  + +Y+G++  +L+   
Sbjct: 233  IYVYKRDGRKEVVKFDKVTARISKLCYGLDQNYVDPIEITRKVIEGIYEGVTTVELDNLA 292

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              ++       P+YA + AR  +  L +E          K     +Q LY     +    
Sbjct: 293  AETAAYKTTTHPDYAVLAARIAISNLHKET--------SKNFSQVVQALYEYVNPKN--- 341

Query: 263  GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            G  + ++ ++     + +   L + + YERDF + + G + L   Y L ING   E PQ 
Sbjct: 342  GRHSPMISDATYKVVMEHKDQLDSAIIYERDFHYNFFGFKTLERSYLLRINGKVAERPQH 401

Query: 320  FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
              MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT HPQLSSCFL T+  D
Sbjct: 402  MLMRVAVGIHGQDIE---SAIETYNLMSQKYFTHASPTLFNAGTPHPQLSSCFLVTMKDD 458

Query: 379  DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
             + GI+  L+  AM++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 459  SIDGIYDTLKTCAMISKTAGGIGLNIHCIRGTGSYIAGTNGVSNGIVPMLRVFNNTARYV 518

Query: 439  NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QG  KR GA   Y+E WH DV EFLDLRKN G +  R  ++  A W+PDLFMKRV QN 
Sbjct: 519  DQGGNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNG 578

Query: 498  GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             W+L  P+E   L D YG EFE  YE YE +         R + A  LW  +L    ETG
Sbjct: 579  DWSLMCPNECPGLADCYGDEFERLYERYEAEGRSK-----RTVKAQKLWYAILESQTETG 633

Query: 558  HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            +P+I +KD  N +S Q+++G +  SNLCTEI   S+ +E AVCNL SI L          
Sbjct: 634  NPFILYKDAANRKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKT 693

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            +D+ +L S  +   + L+ +IDIN + +E+A+KSN  HR IG+G+ G   A  ++   + 
Sbjct: 694  YDFKRLHSVAKAICKNLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFE 753

Query: 676  SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            S EA  +  +  E I   A+  S ELA++ G+Y ++ GS   QG    D  G+       
Sbjct: 754  SAEARRLNVQIFETIYHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTP----- 808

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                 +    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 809  -----SDLWDWAELKAKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVL 863

Query: 796  SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            +G+F VVN +L+ EL ++ LW++ M + +  H GSI N+  IPD +KK++ T +EI    
Sbjct: 864  AGEFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKA 923

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
            +I+ A+ R  +I Q+QSLN++L  P+  +L  ++   W  GLKT TYYLR++ A++  + 
Sbjct: 924  IIDMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQF 983

Query: 915  TLKGVDGKLNAVPVTDPNSSTH 936
            TL   +             +  
Sbjct: 984  TLSVAEVNEAKAAGKRNGGAVE 1005


>gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Nomascus leucogenys]
          Length = 792

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 458/819 (55%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 4 [Pan troglodytes]
          Length = 792

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
 gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
          Length = 780

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/818 (34%), Positives = 442/818 (54%), Gaps = 49/818 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V + C  L +  V    +  +    +Y+G++  +L+T  
Sbjct: 1   MYVVKRDGRKEKVMFDKITSRVSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++    P+YA + AR  +  L +E         +K     M  LY     +    
Sbjct: 61  AEIAASMTTNHPDYALLAARIAVSNLHKET--------KKTFSVVMDELYNYVNPKN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +   +        L + + Y+RD+ + + G + L   Y L I+    E PQ 
Sbjct: 110 GKHSPMISKETHEIITKHCERLNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVSVGIHGEDIDG---AIETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FLDL+KNTG + +R  D+  A W+PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P++   LHD YG+EFE  Y  YE           R++ A  LW  +L    ETG
Sbjct: 347 VWSLMCPNDCPGLHDTYGEEFEKLYTEYEDAGK-----FIRQVRAQKLWFAILEAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      +  F
Sbjct: 402 TPYMLYKDACNRKSNQKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +   R L+ +IDIN + + +A+KSN  HR IG+G+ G   A  L+  P+  
Sbjct: 462 DFHKLAEVTKVITRNLNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDG 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA ++  +  E I + A+ AS ELA+E G Y +++GS   QG    D            
Sbjct: 522 PEARDLNIKIFESIYYGALQASCELAKEVGPYETYEGSPASQGQLQFDLWEKQP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK+ +K  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWNWNSLKEDIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L    +W++ M ++L  ++GSI  I  IPDD+K ++ T +EI    L
Sbjct: 632 GEFQVVNQHLLKDLTDMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTL 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR++ A S  + T
Sbjct: 692 IDMAADRGAYIDQSQSFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     + +               +  S  +   C +C
Sbjct: 752 VDKEKLQKD-----------RESAMVCSLENKEACLMC 778



 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  + K    +       +     +I  +     T  L  
Sbjct: 1   MYVVKRDGRKEKVMFD--KITSRVSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDT 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL- 145
             + +               M + H         Y    + +  +  H ++    +  + 
Sbjct: 59  LAAEIAAS------------MTTNHPD-------YALLAARIAVSNLHKETKKTFSVVMD 99

Query: 146 ----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                +   +G      SK    I+ + C  L    S I+    Y   + G    +
Sbjct: 100 ELYNYVNPKNGKHSPMISKETHEIITKHCERLN---SAIIYDRDYNYNFFGFKTLE 152


>gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens]
 gi|132608|sp|P23921|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens]
 gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens]
 gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens]
 gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens]
 gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
 gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
          Length = 792

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|149719333|ref|XP_001499936.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase subunit
           M1) (Ribonucleotide reductase large subunit) [Equus
           caballus]
          Length = 792

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +  +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKPTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHSEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L       + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFQKLAEVTKVIVRNLNKIIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +L++E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLSREDGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I+ IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTI 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens]
          Length = 792

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKQDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis ER-3]
          Length = 886

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/805 (34%), Positives = 436/805 (54%), Gaps = 39/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ +   +  +       + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 113 ---APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAVGIHGDDVEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EF+  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGEEFDALYEKYEKEGRGK-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   +++AS ELA+  G YS+++GS   QG+   D   +       
Sbjct: 522 SPEAKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLG 939
           T+     K+    V   N +    G
Sbjct: 752 TVDQEQLKVADTNVARVNGAMKKRG 776


>gi|149634836|ref|XP_001505371.1| PREDICTED: similar to M1 subunit of ribonucleotide reductase
           [Ornithorhynchus anatinus]
          Length = 792

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKYPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYVNPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ ++ +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKTTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVAVGIHEEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNR 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L       + +
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA++ G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNQQIFETIYYGALDASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSST-HSLGIPSSCTSDTECEVC 953
           L     K       +      ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKEKEKATKEEEEKERNTAAMVCSLENREECLMC 790


>gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 886

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/805 (34%), Positives = 436/805 (54%), Gaps = 39/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ +   +  +       + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 113 ---APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAVGIHGDDVEK---VIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EF+  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGEEFDALYEKYEKEGRGK-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   +++AS ELA+  G YS+++GS   QG+   D   +       
Sbjct: 522 SPEAKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLG 939
           T+     K+    V   N +    G
Sbjct: 752 TVDQEQLKVADTNVARVNGAMKKRG 776


>gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Callithrix jacchus]
          Length = 792

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-----RRVRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMMCSLENRDECLMC 790


>gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H143]
 gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H88]
          Length = 881

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N+ WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776


>gi|132609|sp|P07742|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
          Length = 792

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D    +   L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW++ M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo
           sapiens]
          Length = 792

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/819 (35%), Positives = 457/819 (55%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L  NG   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +    I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFGTIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 748

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/752 (61%), Positives = 569/752 (75%), Gaps = 22/752 (2%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           AR L++ LR E L  +      ATHHEM  LY +    Y+  G+K  LL+  + +FDL  
Sbjct: 1   ARLLMDTLRAEGLGFL-GVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEK 59

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+
Sbjct: 60  LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAI 119

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGL
Sbjct: 120 EFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGL 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           GNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+E
Sbjct: 180 GNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIE 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+ 
Sbjct: 240 EFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQE 299

Query: 521 AYENYERQ-ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            YE YE      G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVV
Sbjct: 300 RYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVV 359

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           HSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  AVR+LDNVIDIN
Sbjct: 360 HSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDIN 419

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS 
Sbjct: 420 YYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASC 479

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIG 757
           +LA ERGAY +F+GSLW +G+ P+DS  +L E R E  ++++    L W  ++ RV+  G
Sbjct: 480 DLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-G 538

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD
Sbjct: 539 IRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWD 598

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+
Sbjct: 599 SVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYI 658

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
              SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          +
Sbjct: 659 AGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSA 716

Query: 938 LGIP---------------SSCTSDTECEVCQ 954
           +  P               +    + +CE CQ
Sbjct: 717 ITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 748


>gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           anisopliae ARSEF 23]
          Length = 905

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/806 (35%), Positives = 439/806 (54%), Gaps = 36/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+              ++
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSSVVSDLYHYV-NPKNERASPMISKD 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +  + H+         L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 120 TYECVMRHK-------DELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E   R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDNIE---RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YER+         R I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEREGKGR-----RTIRAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A       ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS+ELA+E+G YS+FKGS   +G+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTD---PNSSTHSLGI 940
               K+    V     P   T   G 
Sbjct: 755 QEALKVADANVGKDRLPKKRTAPAGT 780


>gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
          Length = 792

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/819 (34%), Positives = 446/819 (54%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGREERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K P+YA + AR  +  L +E         +K     ++ LY          
Sbjct: 61  AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVVEDLYNYVNPLN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +  +D  L     L + + ++RDF++ + G + L   Y L ING   E PQ 
Sbjct: 110 RCHSPMVAKETLDIVLENKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +     +E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHQTDIDA---VIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV +FLDL+KNTG + +R  D+    WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P +   L + +G+EFE  Y  YE++       V R + A  +W  ++    ETG
Sbjct: 347 DWSLMCPSDCPGLDECWGEEFEKLYTRYEQEGR-----VKRVVKAQQVWHAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFSKLAYVTKVIVRNLNKIIEINYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  +  E I + A+ +S ELA E GAY ++ GS   +G+   +            
Sbjct: 522 AEAQKLNTQIFETIYYAALESSCELAAELGAYETYPGSPVSKGILQYNMWDKTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+ +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWTLLKENIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + L   +GSI  I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTI 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T
Sbjct: 692 LKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K    +  +    +     +   +  S  +  +C +C
Sbjct: 752 LNKEKLKESQSAKNLEALKELNRAAMVCSLENRDDCLMC 790


>gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus]
 gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus]
 gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus
           norvegicus]
          Length = 792

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/819 (35%), Positives = 460/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S ++  +     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 820

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/847 (35%), Positives = 451/847 (53%), Gaps = 67/847 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C GL    V    V  +    +YDG++ S+L+T  
Sbjct: 1   MFVVKRDGRRESVKFDKITARIERLCYGLDPYFVQPVEVAMKVVAGIYDGVTTSELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +  L        K+    M+ LY     +    
Sbjct: 61  AETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSGTMKLLYQYVDPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ +        +   L + + Y+RDF +++ G + L   Y + +NG  +E PQ 
Sbjct: 110 GENAALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  +  EK   A+E YNLLS   F  +TPTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIHGENIEK---AIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+ EFL+L+KN G +  R  D+  A W PDLFMKRV  NA
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D YG++FE  Y  YE +         + I A  LW ++L    ETG
Sbjct: 347 DWSLFCPHECPGLADTYGEDFERLYTKYEAEGKAR-----KTIPAQELWFQILESQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L          
Sbjct: 402 TPYMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVNTEGPA 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ KL    +   R L+ +IDIN + + +A+ SN  HR IGLG+ G   A  L+  P
Sbjct: 462 PSFDFQKLYEVTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRFP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E + F A+  S+ELA+E G YSSF+GS   +G+F  D   +  +  
Sbjct: 522 FDSEEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD-- 579

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    W++L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 580 -------SGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRR 632

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN  L+ +L +  LW++ M + L   +GS+  I  IP+DLK ++ TA+EI  
Sbjct: 633 VLSGEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIKQ 692

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ ++ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YYLR+++A    
Sbjct: 693 KSIIDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADAV 752

Query: 913 KSTLKGVDGKLNAVPVTD--------------------------PNSSTHSLGIPSSCTS 946
           K T+          PVT+                                   +  S  +
Sbjct: 753 KFTV-DRQAIAETSPVTETIQEKPLDYKGYAKEQAEKAAASFQMTEEEQKYAAMQCSLDN 811

Query: 947 DTECEVC 953
              CE+C
Sbjct: 812 PEGCEMC 818


>gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           acridum CQMa 102]
          Length = 905

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/780 (36%), Positives = 433/780 (55%), Gaps = 33/780 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+              ++
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSSVVSDLYHYV-NPKNERASPMISKD 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +  + H+         L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 120 TYECVMRHK-------DELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E   R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDNIE---RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YER+         R + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEREGKGR-----RTVRAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A       ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS+ELA+E+G YS+FKGS   +G+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754


>gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 877

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/800 (34%), Positives = 434/800 (54%), Gaps = 43/800 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      YI  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLY-----HYINP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                    S   +++       L + + Y+RDF ++Y G + L   Y L ING   E P
Sbjct: 108 KNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+  ++ EK   A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  + 
Sbjct: 168 QHMIMRVAVGIHGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEK 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFEALYEQYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL S+ L  +     
Sbjct: 400 TGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL    +  VR L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVTQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I   A++AS ++A+  G Y +++GS   QGV   D   +     
Sbjct: 520 FDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GSI +I  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  
Sbjct: 690 RTIVQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPN 932
           + T+     K+    V   +
Sbjct: 750 QFTVDQEQLKVADTNVARSS 769


>gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii]
 gi|75041664|sp|Q5R919|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii]
          Length = 792

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/819 (35%), Positives = 459/819 (56%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKEA--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  S+LCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +        
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K        V   +     ++  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus G186AR]
          Length = 881

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV QN+ WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776


>gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
 gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
          Length = 808

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/834 (36%), Positives = 460/834 (55%), Gaps = 53/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  DG   S    ++   +E+    L    V    V  +    +YDG++  +L+   
Sbjct: 1   MQVIKRDGRRESVRFDKITARIEKLSYSLARDYVQPVEVAKKVITGIYDGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +           K     M+ LY     +    
Sbjct: 61  AETAATMAIKHPDYAILAARIAISNLHK--------TTSKVFSKTMKELYEYIDPK---T 109

Query: 263 GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G KA L+ +     +  +   L + + Y+RD+ ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GEKAGLISDETHAAIQKNAAVLDSSIIYDRDYNYDYFGFKTLERSYLLKMDGQVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ +K    +E Y LLS   F  +TPTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIHGEDVDK---VLETYELLSGKWFTHATPTLFNAGTPKPQLSSCFLLTMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GTNG S GVIP LKV NDTA  V
Sbjct: 227 SIEGIYDTLKQCAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGVIPMLKVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDL+KN G +  R  D+  A W+ DLFMKRV  + 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDD 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   LH++YG+EFE  YE YE +         + I A  LW K+L    ETG
Sbjct: 347 TWSLFCPNEAPGLHEVYGEEFEKLYEQYELEGRAR-----KVIKAQDLWFKILESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     + +FD
Sbjct: 402 TPYMLYKDAANEKSNQKNLGTIKSSNLCTEIMEYTSKDEVAVCNLASIALPKFVIDGKFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   R L+ +IDIN + +++A+ SN  HR IG+G+ G      +L +P+ S 
Sbjct: 462 HQKLYEVTQVVTRNLNRIIDINYYPVKEAENSNLRHRPIGIGVQGLADTFMMLRMPFDSE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E I F +++AS+ELAQ+ GAY S+KGS   +G+F  D  G+  E      
Sbjct: 522 EAKGLNKDIFETIYFASMTASMELAQKEGAYESYKGSPVSEGIFQFDMWGVKPE------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W  L+K VK  G RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRWDWQALRKDVKKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+N+L + +LW   M + +K  +GS+ NI  IP +LK I+ T +EI    ++
Sbjct: 633 EFVVVNKHLLNDLVELNLWGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVWEIKQKDVV 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLN++++ P+  KL  ++  AW  GLKT TYYLR+++A    + T+
Sbjct: 693 DMAADRGAFICQSQSLNIHMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAAAKAIQFTV 752

Query: 917 -----KGVDGKLNAVPVTDPNSSTHSLGIPSSCT------------SDTECEVC 953
                +   GK+N        +++ S     S +             D +C+ C
Sbjct: 753 EKKYQEESKGKINGQADLVATTASASAHQNGSVSEEYNVEGQNCSIDDPDCDSC 806



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGGV--TSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +QVIKR+G      FD  KI+  I K   ++           + +I  + +   T  L +
Sbjct: 1   MQVIKRDGRRESVRFD--KITARIEKLSYSLARDYVQPVEVAKKVITGIYDGVTTIELDN 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y    + +  +  H  +    +  +K
Sbjct: 59  LAAETAAT------------MAIKHPD-------YAILAARIAISNLHKTTSKVFSKTMK 99

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                I    G      S      +++  + L    S I+    Y   Y G    +
Sbjct: 100 ELYEYIDPKTGEKAGLISDETHAAIQKNAAVL---DSSIIYDRDYNYDYFGFKTLE 152


>gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus]
          Length = 792

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/819 (36%), Positives = 458/819 (55%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D    +   L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK++  T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L K            +      +  +  S  +  EC +C
Sbjct: 752 LNKEKLKDKEKALKEEEEKERDTAAMVCSLENREECLMC 790


>gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae]
 gi|187031585|emb|CAP29649.1| CBR-RNR-1 protein [Caenorhabditis briggsae AF16]
          Length = 790

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/816 (35%), Positives = 450/816 (55%), Gaps = 45/816 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG + + +  ++   +++   GL    V    V  +    +Y G++  +L+     
Sbjct: 9   VVKRDGRMENVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAAE 68

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++  + P YA + AR  +  L ++          K     M+ L+  +       G 
Sbjct: 69  TAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPH---TGK 117

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            A ++ +   +    +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ   
Sbjct: 118 HAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEVVERPQQML 177

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+  K+      A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 178 MRVAIGIHGKDISA---AIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSI 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 235 LGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQ 294

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A W+PDLFMKRV ++  W
Sbjct: 295 GGNKRPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDW 354

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P E   L D +G+EFE  Y  YE +       V + + A  LW  +++   ETG P
Sbjct: 355 SLMCPCECPGLDDCWGEEFETLYAKYEAEGR-----VRKTVKARKLWEHIVSNQIETGLP 409

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
           +IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L     N++ FD+
Sbjct: 410 YITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALNRFVTNDKKFDF 469

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KLA   +   + L+ +ID+N + IE+A+ SN  HR IGLG+ G      L+  P+ SP+
Sbjct: 470 VKLAEVTKVITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSPQ 529

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+          
Sbjct: 530 ARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP-------- 581

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T++  WDEL+K++   G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +SGD
Sbjct: 582 --TNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGD 639

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  ++ +L +R LW + M + L  ++GSI NI  IPDD+K+++ T +EI    +IE
Sbjct: 640 FQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWEISQKEIIE 699

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T+ 
Sbjct: 700 MAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTV- 758

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 +   +   N       + S    D  C +C
Sbjct: 759 ------DKAALQQKNVQKAESRVASPEAQDEGCLMC 788


>gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS]
          Length = 893

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/794 (35%), Positives = 432/794 (54%), Gaps = 43/794 (5%)

Query: 151 DGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL  + V +  +  +    +Y G++  +L+     ++  
Sbjct: 23  DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAY 82

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++         +K     +  LY      YI        
Sbjct: 83  MTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLY-----HYINPKNNRPA 129

Query: 269 LHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
              S   +++       L + + Y+RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 130 PMISQKTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMR 189

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+  ++ EK   A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + G
Sbjct: 190 VAVGIHGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEG 246

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG 
Sbjct: 247 IYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGG 306

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTL
Sbjct: 307 NKRPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTL 366

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P+E   L D+YG EFE  YE YE++         + I A  LW  +L    ETG+P++
Sbjct: 367 FCPNEAPGLADVYGDEFEALYEQYEKEGRGR-----KTIKAQKLWYAILEAQTETGNPFM 421

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYD 619
            +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL S+ L  +      ++D+ 
Sbjct: 422 LYKDACNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFG 481

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +  VR L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPEA
Sbjct: 482 KLHEVTQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEA 541

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I   A++AS ++A+  G Y +++GS   QG+   D   +           
Sbjct: 542 RQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTP--------- 592

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F
Sbjct: 593 -TDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEF 651

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ 
Sbjct: 652 QVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQM 711

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+  
Sbjct: 712 AADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQ 771

Query: 919 VDGKLNAVPVTDPN 932
              K+    V   +
Sbjct: 772 EQLKVADTNVARSS 785


>gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC
           30864]
          Length = 785

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/818 (34%), Positives = 444/818 (54%), Gaps = 44/818 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V + C GL    V +  +  +    +Y G++  +L+T  
Sbjct: 1   MFVKKRDGRTEKVMFDKITSRVNKLCYGLNSDYVDAVEITQKVINGVYPGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P+YA + AR  +  L +E         +K     M+ LY     +  + 
Sbjct: 61  AETAAYLTTKHPDYAILAARIAVSNLHKET--------KKQFSSVMRDLYE---YQNPKT 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A LL + + +    +   L + + Y+RDF++ Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKPAPLLADDVYEIIQRNADILDSAVIYDRDFSYSYFGFKTLERSYLLKLHGKIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     E     +E YNL+S   F  ++PTLFNSGT HPQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIH---KENIDLVLETYNLMSEKWFTHASPTLFNSGTPHPQLSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N TA  V
Sbjct: 227 SIEGIYETLKTCAMISKTAGGIGLNVHCIRASGSYIAGTNGHSNGLVPMLRVFNTTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  +R GA   YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNRRPGAFAMYLEPWHADVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L + YG +FE  Y  YER+         + I A  LW  +L    E+G
Sbjct: 347 NWSLMCPHECPGLEETYGDKFEELYTRYEREGKAR-----KVIKAQKLWFAILESQTESG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQF 616
            P++ +KD CNI+S Q+++G +  SNLCTEI   SS +E AVCNL S++L     ++  +
Sbjct: 402 TPYMLYKDACNIKSNQKNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVRSDRTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +   + L+ +IDIN + + +A+KSN  HR IGLG+ G   A   + +P+ S
Sbjct: 462 DFKKLHEITQVVTKNLNRIIDINYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDS 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A ++  E  E I   A++ASVE+A++ G Y ++ GS   QG+   D  G+        
Sbjct: 522 EDAKKLNREIFETIYHAALTASVEMAKKSGPYETYAGSPVSQGILQHDMWGV-------- 573

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD L+ ++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 574 -KETSGLWDWDALRAQIAQHGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 632

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+++L +  LW++ M + +    GSI  IE IP  ++ ++ T +E+    L
Sbjct: 633 GEFQIVNQHLLHDLMELGLWNDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTL 692

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR+R A +  + T
Sbjct: 693 IDMAADRGAYIDQSQSFNVHIAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFT 752

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +   +  P        +  S  +   C +C
Sbjct: 753 V-------DQKALAAPQKVDEEAAMVCSLQNKEACLMC 783


>gi|73988085|ref|XP_862223.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           5 [Canis familiaris]
          Length = 793

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/820 (35%), Positives = 460/820 (56%), Gaps = 40/820 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHEEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
               T    W  LK+++    G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +
Sbjct: 576 ----TELWDWKLLKEKIANKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    
Sbjct: 632 SGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKI 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + 
Sbjct: 692 VLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQF 751

Query: 915 TL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           TL K            +     ++  +  S  +  EC +C
Sbjct: 752 TLNKEKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 791


>gi|39978231|ref|XP_370503.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
 gi|145013418|gb|EDJ98059.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
          Length = 909

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/812 (34%), Positives = 434/812 (53%), Gaps = 33/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDPEHVDPVAITQKVISGVYGGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+       +      ++
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSVVSDLFHYV-NPKNGKLSPMIAQD 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + H+  +D       + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 120 TYDCVMRHKEDLD-------SAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E   R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDNIE---RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YE+          + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQAGKGR-----KTIKAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL    +  VR L+ +I++N + +++A+ SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 EKLHEVTQVVVRNLNKIIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G YS+++GS   QG+   D   +          
Sbjct: 525 ARDLNKKIFETIYHAALTASCKLAEEQGPYSTYEGSPVSQGILQYDMWNVKP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWDALKANIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW + M + +    GSI NI  IP+D KK++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVELGLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
               +L    V              S  S   
Sbjct: 755 QEALRLQDKAVAKERVLGKRAPPTGSYMSSPG 786


>gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter
           heparinus DSM 2366]
 gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter
           heparinus DSM 2366]
          Length = 792

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 450/819 (54%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C G     V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +           K+    M+ LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNT--------TKSFSKTMEMLYNYVDSKTEKP 112

Query: 263 GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A L+ + +   ++ +   L + + Y+RDF F+Y G + L   Y L ++G  +E PQ 
Sbjct: 113 ---ASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFKTLEKSYLLKVDGQIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+   + +    A+E YNL+S   F  +TPTLFN+ T  PQ+SSCFL T+  D
Sbjct: 170 LFMRVAVGIHKGDID---SAIETYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFM+RV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G+EF+  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 DWSLFCPHEAPGLADCFGEEFDALYERYEQEGRAR-----KTIKAQELWFAILDSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     N +FD
Sbjct: 402 TPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL      A   L+ +ID N + +E+A+ SN  HR +GLG+ G   A  L+ +P+ S 
Sbjct: 462 HQKLYDVTYQATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRLPFESE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A  +  E  E I F A++AS +LA + G Y +FKGS   QG F  D   +  +      
Sbjct: 522 GARILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFDLWKVQPD------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI    +I
Sbjct: 633 EFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSII 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+   K T+
Sbjct: 693 DMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTV 752

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS--SCTSDTECEVC 953
           +   GK N  PV   +    +  I     C+ +  C  C
Sbjct: 753 ENQAGK-NMEPVIPEHIEQSAEEIVEGPVCSMEEGCISC 790


>gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1]
          Length = 784

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/819 (35%), Positives = 434/819 (52%), Gaps = 47/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   VE+   GL    V    +  +    +Y G+  + L+   
Sbjct: 1   MYVVKRDGRHEPVLFDKITNRVEKLSFGLNRDYVEPVEITKKVMAGVYSGVHTTQLDQLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   + P+YA + AR  +  L ++          K+    M+ L+     +    
Sbjct: 61  AETAASFTTRHPDYAILAARISVSNLHKQT--------NKSFSQTMKALHEYVNPK---T 109

Query: 263 GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ +     ++ +   L + + Y+RDF F + G + L   Y L ING  +E PQ 
Sbjct: 110 GKLAPLVSDETWAVIEKNKELLDSHVIYDRDFNFNFFGFKTLERSYLLKINGQVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRV++G+     +     +E YN +S   F  ++PTLFNSGT   QLSSCFL ++  D
Sbjct: 170 MFMRVSVGIHGDNLDA---VLETYNHMSQGLFTHASPTLFNSGTPLAQLSSCFLVSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L   AM++K +GG+G     VR  G++I GTNG+S G++P L+V N+TA  V
Sbjct: 227 SIKGIYDTLTTCAMISKTAGGVGLSIHNVRASGSYIAGTNGESNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDL+KN G D  R  D+  A W+PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYALWVPDLFMKRVERNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D YG EFE  YE YER+         + I A  LW  +L    ETG
Sbjct: 347 QWTLMCPHECPGLADCYGAEFEALYERYEREGRGR-----KTIDAQKLWFAILESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++G +  SNLCTEI   S+ +E AVCNL S+ L      +   
Sbjct: 402 TPYMLYKDACNEKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLASLALPKFVNEDTRT 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+++L   ++   R L+ +IDIN + + +AK SN  HR IG+G+ G   A  L+ +P+ 
Sbjct: 462 YDFERLHDVVKIVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGVQGLADAFILMRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++     E I   A+ AS E+AQ  G Y +++GS   QG    D  G+       
Sbjct: 522 SPEARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVSQGTLQYDMWGITP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T +  W  LK ++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +
Sbjct: 577 -----TDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF VVN  L+ +L +  +W   +   +  ++GSI  I  IPDD+K ++ T +E+    
Sbjct: 632 SGDFQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDDIKALYKTVWELSQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR+R+A S  K 
Sbjct: 692 LIDLAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTGMYYLRTRAAASAIKF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K                 +  S T+   C +C
Sbjct: 752 TIDATKAKEQ--------QEKEEAAMVCSLTNPEGCLMC 782


>gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera
           kw1407]
          Length = 913

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/780 (35%), Positives = 429/780 (55%), Gaps = 33/780 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + +    +  +    +Y G++ + L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHIDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             ++              +E
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQTKKQWSAVITDLYNYV-NPRNNTLSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + H+   DFD     + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 120 TYDCVMRHKE--DFD-----SAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     +  +R VE YN +S+  F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIWG---DNVERVVETYNYMSNKFFTHASPTLFNAGTPQAQMSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA C YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFCIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   + D YG+EFE  YE YER+         + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGMADCYGEEFEALYEKYEREGRGR-----KTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L +     N  +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L++VID+N + + +AK SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVAQLVVRNLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASCELAKIEGTYSTYEGSPVSQGILQPDMWDVKP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD L+ ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWDSLRLKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754


>gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           equinum CBS 127.97]
          Length = 875

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/809 (34%), Positives = 437/809 (54%), Gaps = 39/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ 
Sbjct: 110 GRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EFE  YE YE++           I A  LW  +L    ETG
Sbjct: 347 DWTLFCPNEAPGLADVYGEEFEALYEKYEKEGRGR-----TTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +       
Sbjct: 522 SPEAKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           T+     K+    V   N++       +S
Sbjct: 752 TVDQEQLKVVDTNVARTNAAMRKRVGTAS 780


>gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
 gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
          Length = 912

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/805 (35%), Positives = 434/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVRKRDGRQERVQFDKITARVSRLCYGLDVDHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+              +E
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSAVVSDLYHYV-NPKNERASPMIAKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +  + H+         L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 120 TYECVMRHK-------EELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     +  +R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWG---DNVERVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDSLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG EFE  YE YE+          + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGDEFEALYEKYEKAGRGR-----KTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      NQ  +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A  SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVAQVVVRNLNKIIDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS +LA+E+G YS+++GS   QG+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TGLWDWDALKAKIKEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EPS  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               ++    V+   S       P+
Sbjct: 755 QEALRVQDTNVSKGVSGLKKRAPPA 779


>gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
 gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
          Length = 884

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/801 (34%), Positives = 434/801 (54%), Gaps = 43/801 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      Y+  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLY-----HYVNP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                    S   +++       L + + Y+RDF ++Y G + L   Y L ING   E P
Sbjct: 108 KNNRPAPMISQKTYEIVMKHSEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+   + EK   A+E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  + 
Sbjct: 168 QHMIMRVAVGIHGDDIEK---AIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   Y+E WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV +
Sbjct: 285 YVDQGGNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEK 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFEALYEQYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L  +     
Sbjct: 400 TGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL    +  +R L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVTQVLIRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I   +++AS +LA+  G Y +++GS   QG+   D   +     
Sbjct: 520 FDSPEARQLNTQIFETIYHASLTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    WD LKK +   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------SDLWDWDSLKKEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  
Sbjct: 690 RTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNS 933
           + T+     K+    V   N 
Sbjct: 750 QFTVDQEQLKVADTNVARTNG 770


>gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
 gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
          Length = 892

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/810 (34%), Positives = 441/810 (54%), Gaps = 45/810 (5%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                   +++  +++ C GL    V    +  +  + +Y G++  +L+     ++  L 
Sbjct: 12  RKEQIQLGKIQSRIKKLCYGLDMRHVDPLAITIKVVQGVYHGVTTVELDNLAAETAAYLT 71

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            + P+YA + AR  +  L +E   +  +  +K  ++              + G +A ++ 
Sbjct: 72  TQHPDYAVLAARIAISNLHKETTKSFSQVVEKLYNYVNP-----------KNGKRASMIS 120

Query: 271 ESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           ++       +   L + + Y+RDFA+ Y G + L   Y L ING   E PQ   MRVA+G
Sbjct: 121 DATYKVVMDNAETLDSAIIYDRDFAYNYFGFKTLERSYLLRINGRVAERPQHMIMRVAVG 180

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGA 386
           +     +  +R +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL ++  D + GI+  
Sbjct: 181 IHG---DNIERVLETYNLMSDRYFTHASPTLFNAGTPHPQMSSCFLVSMKDDSIEGIYDT 237

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445
           L++ AM++K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QG  KR 
Sbjct: 238 LKQCAMISKTAGGIGLNIHNIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRP 297

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YLE WH DV EFLDLRKN G + +R  D+  A WIPDLFMKRV     W+LF P+
Sbjct: 298 GAFAIYLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSLFCPN 357

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E   L D +G EFE  Y  YE +         +KI A  LW  +L    ETG+P++ +KD
Sbjct: 358 EAPGLADCWGDEFEALYAKYEAEGRER-----KKIPAQKLWYAILEAQIETGNPFMLYKD 412

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N +S QQ++G + SSNLCTEI   S+ +ETAVCNL S+ L     +  +D+ KL    
Sbjct: 413 SANRKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIRDGVYDFQKLHDVT 472

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +   R L+ +ID+N + + +A++SN  HR IGLG+ G   A   L +P+ SPEA E+  +
Sbjct: 473 KVVTRNLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARELNKQ 532

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I   A  AS +LA+E G Y +++GS   QG    D  G+            +    
Sbjct: 533 IFETIYHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTP----------SDLWD 582

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK ++   GMRN+  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +
Sbjct: 583 WASLKAKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPW 642

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ EL  + LWD+ M + +  ++GSI +I RIPDD+K I+ T +EI    +++ A+ R  
Sbjct: 643 LLRELVDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAADRGP 702

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK------- 917
           +I Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A+   + T+        
Sbjct: 703 FICQSQSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQAMLKES 762

Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
              +G++   P     ++T      +  +S
Sbjct: 763 NKAEGEVAGAPARPVVATTPRKAAATPSSS 792


>gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus
           Af293]
 gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           fumigatus Af293]
 gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           fumigatus A1163]
          Length = 859

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/815 (35%), Positives = 438/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      Y+  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYVNP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             K      S   +++       L + + Y+RDF + + G + L   Y L ING   E P
Sbjct: 108 KNKQPAPMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+     EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVAVGIHGNNIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVES 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EF+  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFDALYERYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +ID+N + + +AKKSN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E I   A++AS ELA+E G Y +++GS   QG+   D         
Sbjct: 520 FDSAEARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDSLKAKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RTILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + T+     K+    V   N++       S  T+ 
Sbjct: 750 QFTVDQEQLKVADTNVARANAAYKKRAAGSVPTTY 784


>gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 859

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/815 (35%), Positives = 438/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      Y+  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYVNP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             K      S   +++       L + + Y+RDF + + G + L   Y L ING   E P
Sbjct: 108 KNKQPAPMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+     EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVAVGIHGNNIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVES 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EF+  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFDALYEQYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +ID+N + + +AKKSN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E I   A++AS ELA+E G Y +++GS   QG+   D         
Sbjct: 520 FDSAEARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDSLKTKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RTILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + T+     K+    V   N++       S  T+ 
Sbjct: 750 QFTVDQEQLKVADTNVARANAAYKKRAAGSVSTTY 784


>gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 815

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/815 (53%), Positives = 568/815 (69%), Gaps = 14/815 (1%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
           +  +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I +
Sbjct: 8   VQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMA 67

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R  IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G +
Sbjct: 68  ARANIEREPDYAFIAAELLTSSLYEETLGCNSQDPN------LSEIHKKHFKEYILNGEE 121

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            R L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+
Sbjct: 122 YR-LNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVS 180

Query: 326 MGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLAL E E++   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+
Sbjct: 181 MGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIY 240

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKR
Sbjct: 241 KVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKR 300

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSP
Sbjct: 301 KGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSP 360

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           D+V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFK
Sbjct: 361 DDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFK 420

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL  T
Sbjct: 421 DPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKET 480

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I  A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +D
Sbjct: 481 ISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSD 540

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTS 742
           E  E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E  + ++ +S
Sbjct: 541 ECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSS 600

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ 
Sbjct: 601 KKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIP 660

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N++L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SR
Sbjct: 661 NTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSR 720

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      
Sbjct: 721 RQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRG 780

Query: 923 LNAVPVTDPNSSTHSL---GIPSSCTSDTECEVCQ 954
           +    + + ++ST  +        C+ +  CE CQ
Sbjct: 781 IQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 815


>gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818]
          Length = 779

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/817 (36%), Positives = 440/817 (53%), Gaps = 48/817 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V +   GL  + V +  +       +Y G++  +L+   
Sbjct: 1   MYVVKRDGRKEKVLFDKITSRVSKLSYGLNTEHVDAVEITKRVISGVYTGVTTVELDQLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   K P+YA + AR  +  L +           K     +  L+        E 
Sbjct: 61  AETAASFTTKHPDYAILAARIAVSNLHK--------MTHKQFSDVIDALHHYVNP---ET 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ +   +    +     + + +ERDF F + G + L   Y L +NG   E PQ 
Sbjct: 110 GRPAPLISKETYEQVMANKEVYNSHIIFERDFNFNFFGFKTLERSYLLKMNGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+  ++ +    A+E YN +S   F  ++PTLFNSGT  PQLSSCFL T+  D
Sbjct: 170 MFMRVAIGMHGEDVDA---AIETYNYMSEGFFTHASPTLFNSGTPIPQLSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKTAGGIGLSVHNIRASGSYIAGTNGHSNGLVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A W+PDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D YG EFE  YE YE +         +K+SA  LW  +L    ETG
Sbjct: 347 EWTLMCPHECPGLSDTYGDEFERLYEKYEAEGKGR-----KKVSASKLWFAILDAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +HSSNLCTEI   SS +E AVCNLGSI L     +  FD
Sbjct: 402 TPYMLYKDACNKKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNLGSIALNKFVGDKTFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y KL    +   R L+ +IDIN + + +A+KSN  HR IG+G+ G   A  L+ +P+ S 
Sbjct: 462 YKKLHEVTKVLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFILMRLPFDSD 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+  +  E I   A+ AS E+A   G Y +F+GS   +G+   D   +         
Sbjct: 522 EAREVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTSEGILQFDMWDVKP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W+ L++RVK  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG
Sbjct: 575 ---TDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +  LW + +   +  ++GSI  IE IPDD+K ++ T +E+    LI
Sbjct: 632 EFQVVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWELSQRTLI 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT  YYLRSR+AT+  + T+
Sbjct: 692 DMAADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAATNAIQFTV 751

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  +  S  +  EC +C
Sbjct: 752 DA-----------KKAREAKEAAMMCSIDNRDECVMC 777


>gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
 gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
          Length = 872

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 438/806 (54%), Gaps = 39/806 (4%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    P+YA + AR  +  L ++         +K     ++ LY     +    G  
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIEDLYHYVNPKN---GRP 109

Query: 266 ARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 110 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 169

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 170 RVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 227 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 286

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 287 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 346

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE++           I A  LW  +L    ETG+P+
Sbjct: 347 LFCPNEAPGLADVYGEEFEALYEKYEKEGRGR-----TTIKAQKLWYAILEAQTETGNPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++D+
Sbjct: 402 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 462 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 522 AKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP-------- 573

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 574 --TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 631

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 632 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 691

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 692 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 751

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K+    V   N++       +S
Sbjct: 752 QEQLKVVDTNVARTNAAMRKRVGAAS 777


>gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
 gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
          Length = 870

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/800 (35%), Positives = 434/800 (54%), Gaps = 39/800 (4%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    P+YA + AR  +  L ++         +K     +  LY     +    G  
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYVNPKN---GRP 109

Query: 266 ARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 110 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 169

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 170 RVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 227 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 286

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 287 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 346

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE+            I A  LW  +L    ETG+P+
Sbjct: 347 LFCPNEAPGLADVYGEEFEALYEKYEKDGRGRS-----TIKAQKLWYAILEAQTETGNPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++D+
Sbjct: 402 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 462 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 522 AKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP-------- 573

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 574 --TDLWDWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 631

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI N+  IP D+K ++ T +EI    +++
Sbjct: 632 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTIVQ 691

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 692 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 751

Query: 918 GVDGKLNAVPVTDPNSSTHS 937
               K+    V   N+S   
Sbjct: 752 QEQLKIVDTNVARTNASARK 771


>gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 873

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/810 (34%), Positives = 438/810 (54%), Gaps = 39/810 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     ++ LY     +    
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQT--------KKQFSAVIEDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++   M +        L + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 110 NKAAPMISPEMYETVMKHADELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  +  EK   A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D
Sbjct: 170 MIMRVAVGIHGENIEK---AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKSAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EF+  YE YE++         R + A  LW  +L    ETG
Sbjct: 347 DWTLFCPNEAPGLADVYGEEFDALYEKYEKEGRGR-----RTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L      A  +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A++AS+ELA+E G Y +++GS   QG+   D           
Sbjct: 522 SPEAKQLNIQIFETIYHGALTASIELAKEYGTYETYEGSPVSQGILQYDMWDRTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK +++  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDALKAQIREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRS 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+ +A++  + 
Sbjct: 692 ILQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           T+     K+    V   N  +       + 
Sbjct: 752 TVDQEQLKVQDTNVARANGISKKRSPAPAA 781


>gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis
           thaliana]
          Length = 816

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/843 (34%), Positives = 449/843 (53%), Gaps = 63/843 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPILVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H                
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVND-----------RS 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ 
Sbjct: 110 GLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+G L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYGTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YER+         + + A  LW ++LT   ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGAEFETLYTKYEREGK-----AKKVVQAQQLWYEILTSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD++KLA    T    L+ +ID+N + +E AK SN  HR IG
Sbjct: 462 LDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS   
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVIP----------SDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GL
Sbjct: 692 PDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTEC 950
           KT  YYLRSR+A    K T+     K           V + ++ T    +  S T+  EC
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEEC 811

Query: 951 EVC 953
             C
Sbjct: 812 LAC 814



 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGG--VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  + K    +        +  Q +   + +   T  L  
Sbjct: 1   MYVVKRDGRQETVHFD--KITARLKKLSYGLSSDHCDPILVAQKVCAGVYKGVTTSQLDE 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y    + +  +  H  +    +  +K
Sbjct: 59  LAAETAAA------------MTCNHPD-------YASLAARIAVSNLHKNTKKSFSETIK 99

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                +    G      +  +  I+ +  + L    S+I+    ++  Y G    +
Sbjct: 100 DMFYHVNDRSGLKSPLIADDVFEIIMQNAARL---DSEIIYDRDFEYDYFGFKTLE 152


>gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
 gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
          Length = 802

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/829 (35%), Positives = 455/829 (54%), Gaps = 49/829 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   VE+ C GL  + V +  V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGHKEAVKFDKITARVEKLCYGLNAEYVDAIDVAKKVIQGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +  +        K+    M+ LY     +    
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTV--------KSFSKTMENLYNYIDPKV--- 109

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A LL + + +  + +   L + + Y+RDFAF+Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKPAPLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRV++G+  ++ +     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+  D
Sbjct: 170 MFMRVSVGIHKEDIDA---VIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   LH+ +G+EFE  Y  YE+     E +  + + A  LW  +L    ETG
Sbjct: 347 DWSLFCPHEAPGLHECWGEEFEKLYTKYEK-----ENRARKTVKAQDLWFAVLDAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLCTEI   + + E AVCNL S+ L     + QFD
Sbjct: 402 TPYLLYKDSANRKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL      A   L+ +ID N + +++A+ SN  HR IGLG+ G   A  L+  P+ S 
Sbjct: 462 HEKLYEVTYQAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRYPFESE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  E  E I F A++AS +LA + GAY ++ GS   +G+   D  G+         
Sbjct: 522 EAKKLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 575 ---SPRWDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +  LWD  M + +   +GSI +I  IP  +K+++ T +EI    +I
Sbjct: 632 EFVVVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIKQRTII 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL++D PS  KL  ++  AW  GLKT  YYLR+++A    + T+
Sbjct: 692 DMAADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQAVQFTV 751

Query: 917 KGVDGKLNAVPV------------TDPNSSTHSLGIPSSCTSDTECEVC 953
           +   G+     V             D           + CT +  C  C
Sbjct: 752 EKQGGQQMEPMVEKKAGEAKAAKAVDTKLDEVEFVEGAVCTMEEGCVTC 800


>gi|312889902|ref|ZP_07749446.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
 gi|311297434|gb|EFQ74559.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
          Length = 792

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 452/819 (55%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C GL    V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGKKETVKFDKITARIEKLCYGLNPSLVDPIDVSKKVVEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +  +        K+    M+ LY     +    
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTI--------KSFSETMRNLYLYTDKK---T 109

Query: 263 GVKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + +   ++ +   L + + Y+RDF F+Y G + L   Y L I+G   E PQ 
Sbjct: 110 GKNASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFKTLEKSYLLKIDGKIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRV++G+  ++ +     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+  D
Sbjct: 170 LFMRVSVGIHKEDID---SVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP LKV NDTA  V
Sbjct: 227 SIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIIPMLKVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WI DLFM+RV ++ 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQRVEEDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   LH+ +GKEFE  Y  YE +         + I A  LW  +L    ETG
Sbjct: 347 QWSLFCPHEAPGLHECWGKEFEALYTKYEAEGRAR-----KTIRAQELWFAILDAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +     FD
Sbjct: 402 TPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYITAGVFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL          L+ +ID N + + +A  SN  HR IGLG+ G       L +P+ S 
Sbjct: 462 HQKLYEVTYQVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRLPFESD 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  E  E I F A++AS +LA + G Y +FKGS   QG F  D   +  +      
Sbjct: 522 EAKKLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPD------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W++L+  V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN +L+++L +  LW+  M + +   +GS+ +I  IP ++K+++ T +EI    +I
Sbjct: 633 EFVVVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIKMRTII 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  ++ Q+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A+   K T+
Sbjct: 693 DMAADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTI 752

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIP--SSCTSDTECEVC 953
           +   GK +  PV   N       IP    C+ +  C  C
Sbjct: 753 ESQGGK-SMEPVIPENGVAVVDEIPDGPVCSMEEGCVTC 790


>gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
 gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/798 (33%), Positives = 431/798 (54%), Gaps = 41/798 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   ++  C GL    V +  V       +Y G++  +L+   
Sbjct: 1   MFVIKRDGHKEPVRFDKITARIQRLCYGLDSDHVDAVAVTQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K      + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT--------TKQFSQVAKILYEYINPK---T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            + + ++ E        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ 
Sbjct: 110 DLHSPMISEETYKIICENADELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVAVGIHGNDIE---RVIETYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L D+YG EFE  YE YER+           + A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAPGLADVYGDEFEALYEKYEREGRGRS-----TVKAQKLWYSILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L +    +   
Sbjct: 402 TPFMLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASS 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++DKL    +   R L+ +ID N + +E+A++SN  +R I LG+ G   A   L +P
Sbjct: 462 SWYNFDKLHEVTKVVTRNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA E+  +  E I   A+ AS+ELAQE G Y +++GS   +G+   D         
Sbjct: 522 FDSQEAKELNIQIFETIYHAAVEASIELAQEEGPYETYEGSPASKGLLQYDLWDRKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------SELWDWDTLKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN  ++ +L    +W++ M +++  ++GSI ++  +PD++K+++ T +EI  
Sbjct: 632 VLAGEFQIVNPHMLKDLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KHIIDMAADRAAFIDQSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLKGVDGKLNAVPVTD 930
           + T+           +  
Sbjct: 752 QFTVDQNSASAAGKTIAS 769


>gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
 gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
          Length = 792

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/819 (35%), Positives = 443/819 (54%), Gaps = 39/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C G     V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +           K+    M+ LY     +    
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNT--------TKSFSKTMEMLYKYVDSK---T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A L+ + + +    +   L + + Y+RDF F+Y G + L   Y L I G  +E PQ 
Sbjct: 110 DKSASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFKTLEKSYLLKIEGQIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+   + +    A++ YNL+S   F  +TPTLFN+ T  PQ+SSCFL T+  D
Sbjct: 170 LFMRVAVGIHKSDID---SAIKTYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V
Sbjct: 227 SIEGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFMKRV  N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKRVEANE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G EFE  YE YE++         + + A  LW  +L    ETG
Sbjct: 347 DWSLFCPHEAPGLADCFGDEFEALYERYEKEGRAR-----KTVKAQELWFAILDSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     N +FD
Sbjct: 402 TPYLLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL      A   L+ +ID N + +E+AK SN  HR +GLG+ G   A  L+ +P+ S 
Sbjct: 462 HQKLYDVTYQATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRLPFESD 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A  +  E  E I F A++AS +LA   G Y +FKGS   QG F  D   +  +      
Sbjct: 522 GARLLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPD------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 576 ---SGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI    +I
Sbjct: 633 EFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSII 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+   K T+
Sbjct: 693 DMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTV 752

Query: 917 KGVDGKLNAVPVTDP--NSSTHSLGIPSSCTSDTECEVC 953
           +   GK N  PV     +     +     C+ +  C  C
Sbjct: 753 ENQAGK-NMEPVIPDHIDQPVEEITDGPVCSMEEGCISC 790


>gi|15227096|ref|NP_179770.1| RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding /
           ribonucleoside-diphosphate reductase [Arabidopsis
           thaliana]
 gi|56749666|sp|Q9SJ20|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase R1
           subunit; Short=AtRNR1
 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
           thaliana]
          Length = 816

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/843 (34%), Positives = 448/843 (53%), Gaps = 63/843 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H                
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVND-----------RS 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ 
Sbjct: 110 GLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YER+         + + A  LW ++LT   ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGAEFETLYTKYEREGK-----AKKVVQAQQLWYEILTSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD++KLA    T    L+ +ID+N + +E AK SN  HR IG
Sbjct: 462 LDSHPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS   
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVIP----------SDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GL
Sbjct: 692 PDDLKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTEC 950
           KT  YYLRSR+A    K T+     K           V + ++ T    +  S T+  EC
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEEC 811

Query: 951 EVC 953
             C
Sbjct: 812 LAC 814



 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGG--VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  + K    +        +  Q +   + +   T  L  
Sbjct: 1   MYVVKRDGRQETVHFD--KITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDE 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y    + +  +  H  +    +  +K
Sbjct: 59  LAAETAAA------------MTCNHPD-------YASLAARIAVSNLHKNTKKSFSETIK 99

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                +    G      +  +  I+ +  + L    S+I+    ++  Y G    +
Sbjct: 100 DMFYHVNDRSGLKSPLIADDVFEIIMQNAARL---DSEIIYDRDFEYDYFGFKTLE 152


>gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma
           mansoni]
 gi|238657529|emb|CAZ28603.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Schistosoma mansoni]
          Length = 837

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/846 (34%), Positives = 458/846 (54%), Gaps = 58/846 (6%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
            K+ ++  DG   + + +++   +   C GL +  +  + V       +Y G++  +L+ 
Sbjct: 15  DKIYVVKRDGRNEAIHCEKITKRIRAMCYGLNESYIDVEAVTKRVVSGLYPGVTTVELDN 74

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               +  ++I K   YA + AR  +  L +E         +      ++ LY     R  
Sbjct: 75  LAAETCASMITKHHEYAILAARLAVSNLHKET--------KSRFSDVVEDLYCYINPR-- 124

Query: 261 EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                + L+ +S+ DF   +   L + + Y+RD+ + Y G + L   Y L ING   E P
Sbjct: 125 -TKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFKTLERSYLLKINGKVHERP 183

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRV++G+   + +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+ 
Sbjct: 184 QHMLMRVSIGIHTSDID---SAIETYNLMSEKWFTHASPTLFNAGTPKPQLSSCFLITMK 240

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+V N TA 
Sbjct: 241 DDSIEGIYDTLKECAVISKNAGGIGLNVHNIRSLGTYIAGTNGESNGIVPMLRVFNSTAR 300

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDLFM+RV  
Sbjct: 301 YVDQGGNKRPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVES 360

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTL  P E   L +++G++F+  YE YER+         + + A  LW  ++    E
Sbjct: 361 NDKWTLMDPHECPGLPEVWGEDFDTLYEKYEREGRGR-----QTVKAQELWYAIIECQIE 415

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG+P++ +KD CN +S  QH+G +  SNLCTEI   SS +ETAVCNL SI+L      + 
Sbjct: 416 TGNPFMLYKDSCNRKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISLGKFVNRDN 475

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ KL    +   R L+ VID+  + +E+A++SN  HR IG+G+ G   A  LL  P
Sbjct: 476 LTFDFAKLQEVTKVVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADAFCLLRYP 535

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++     E + F ++ AS +LA ++G Y S++GS   +G+   D  G+  E  
Sbjct: 536 FDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMWGVDTE-- 593

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +++ S L W  L+ R+   G+RNS  +A  PTA+ + I G ++S +P   N++ + 
Sbjct: 594 ---ELSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFTSNVFSRR 650

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F +VN +L+++L + +LW E + + +  + GSI +I+ IP +LK ++ T +EI  
Sbjct: 651 VLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYKTVWEISQ 710

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLNL+L +P+  K+  ++  AW  GLKT  YYLR+R A    
Sbjct: 711 KKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRTRPAADPI 770

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHS------------------------LGIPSSCTSDT 948
           K ++     ++     T  N   ++                          I  S  +  
Sbjct: 771 KFSVDKTILRVLTDSTTKTNEPQNNDSIDQTVEAIEELRIIEEIQKRNLDSIACSLNNPE 830

Query: 949 ECEVCQ 954
            C  CQ
Sbjct: 831 GCLSCQ 836


>gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 893

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/791 (35%), Positives = 433/791 (54%), Gaps = 38/791 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V    +  +    +Y G++   L+     ++  
Sbjct: 12  DGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLAAETAAY 71

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++             H+              +E  +  +
Sbjct: 72  MTVTHPDYAILAARIAVSNLHKQTKKQWSAVVSDLYHYV-NPKNDRASPMISQETYECVM 130

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
            H+         L + + Y+RDF ++Y G + L   Y L I+G  +E PQ   MRVA+G+
Sbjct: 131 RHK-------EELDSAIVYDRDFQYQYFGFKTLERSYLLKIDGKIVERPQHMIMRVAVGI 183

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
                E   R +E YNL+SS  F  ++PTLFN+GT  PQLSSCFL  +  D + GI+  L
Sbjct: 184 WGDNIE---RVLETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTL 240

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G +   +R  G++I GTNG S GV P L+V N+TA  V+QG  KR G
Sbjct: 241 KTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVTPMLRVFNNTARYVDQGGNKRPG 300

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E
Sbjct: 301 AFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMCPNE 360

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+EFE  YE YE+          + + A  LW  +L    ETG+P++ +KD 
Sbjct: 361 CPGLADCYGEEFEALYEKYEKAGKGR-----KTMKAQKLWYAILEAQTETGNPFMLYKDH 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLAST 624
           CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L +   +    +D+ KL   
Sbjct: 416 CNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDEACYDFQKLHEV 475

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +T VR L+ +ID+N + + +A+ SN  HR IG+G+ G   A   L +P+ SPEA E+  
Sbjct: 476 TQTVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNK 535

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A++ASV+LA+E G YS+FKGS   +G+   D   +            +   
Sbjct: 536 QIFETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWNVKP----------SDLW 585

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+++VK  G RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 586 DWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNP 645

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW ++M + +   +GSI NI  IP ++K ++ T +EI    +++ A+ R 
Sbjct: 646 WLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQRQVVQMAADRG 705

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + T+       
Sbjct: 706 AFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQ----- 760

Query: 924 NAVPVTDPNSS 934
            A+ V D NS+
Sbjct: 761 QALKVADANSA 771


>gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
 gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
          Length = 870

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 437/806 (54%), Gaps = 39/806 (4%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    P+YA + AR  +  L ++         +K     +  LY     +    G  
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYVNPKN---GRP 109

Query: 266 ARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 110 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 169

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 170 RVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 227 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 286

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 287 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 346

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE++           I A  LW  +L    ETG+P+
Sbjct: 347 LFCPNEAPGLADVYGEEFEALYEKYEKEGRGR-----TTIKAQKLWYAILEAQTETGNPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++D+
Sbjct: 402 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 462 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 522 AKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP-------- 573

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 574 --TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 631

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 632 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTIVQ 691

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 692 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 751

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K+    V   N++       +S
Sbjct: 752 QEQLKVVDTNVARTNAAMRKRVGAAS 777


>gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
 gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
          Length = 878

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 435/806 (53%), Gaps = 39/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNRRP 112

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ +S  +  +       + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 113 ---APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAIGIHGDDVE---RVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+       
Sbjct: 522 SPEAKLLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGI 940
           T+     K+    V   N +      
Sbjct: 752 TVDQEQLKVADTNVARVNGAMKKRAA 777


>gi|73988083|ref|XP_862202.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           4 [Canis familiaris]
          Length = 822

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/844 (34%), Positives = 460/844 (54%), Gaps = 59/844 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHEEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-------------------------ADRG 532
            W+L  P+E   L +++G+EFE  YE Y +                          +   
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYERYGKNMKVIIFNHVFLLFGGSKFQNITLPFSYEK 406

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +
Sbjct: 407 QGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYT 466

Query: 593 SSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN 
Sbjct: 467 SKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNK 526

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+ AS +LA+E G Y ++
Sbjct: 527 RHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETY 586

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PTA+
Sbjct: 587 EGSPVSRGILQYDMWNVTP----------TELWDWKLLKEKIAKYGVRNSLLIAPMPTAS 636

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW+E M + +   +GSI
Sbjct: 637 TAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSI 696

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++  
Sbjct: 697 QSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFY 756

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            W  GLKT  YYLR+R A +  + TL K            +     ++  +  S  +  E
Sbjct: 757 GWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCSLENREE 816

Query: 950 CEVC 953
           C +C
Sbjct: 817 CLMC 820


>gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895]
 gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895]
          Length = 890

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/823 (35%), Positives = 445/823 (54%), Gaps = 49/823 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    V +  +       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVKFDKITARISRLCYGLDPKHVDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +      H+              + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSQVVSDLYHYTNP-----------KN 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ + ++ + + +  +     L + + Y+RDF + Y G + L   Y L I+G   E PQ 
Sbjct: 110 GLHSPMISDEVYEIVMAHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  K+ +K   A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D
Sbjct: 170 MVMRVAVGIHGKDIKK---AIETYNLMSMRYFTHASPTLFNAGTPHPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV +F+D+RKN G +  R  D+  A W+PDLFM+RV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHSDVFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP E   L D++G+EFE  YE Y R+         + I A  LW  +L    ETG
Sbjct: 347 DWTLFSPSEAPGLSDVWGEEFEELYERYVREGRGR-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P+I +KD CN +S Q+++G + SSNLC EI   SS EETAVCNL SI L A  A     
Sbjct: 402 TPFILYKDACNRKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADG 461

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +D+DKL    +   R L+ VID N + +E AK+SN  HR I LG+ G   A  +L 
Sbjct: 462 KTQWYDFDKLHEIAKVVTRNLNRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILR 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IP+ SP+A E+  +  E +   A  AS+ELA E G Y SFKGS   QG+   D       
Sbjct: 522 IPFDSPQAKELNSQIFETLYHAACEASMELAIEEGPYESFKGSPASQGILQFDMWNHKP- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    +    WD LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y 
Sbjct: 581 ---------SGMWDWDALKAKIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYS 631

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN +L+ +L    +WD++M S +   +GSI  +  IP +LK ++ T +E+
Sbjct: 632 RRVLSGEFQIVNPYLLRDLVDLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWEL 691

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I+ A+ R  ++DQ+QSLN+++  P+  +L  ++   W  GLKT  YYLR+++A++
Sbjct: 692 SQKTIIDMAADRGAFVDQSQSLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASA 751

Query: 911 VEKSTLKGVDGKLNAVPVTD------PNSSTHSLGIPSSCTSD 947
             + T+     +  A  V D      P    H++G+ ++  SD
Sbjct: 752 AIQFTVDKAVAEQAANNVADLSRLHRPRYVPHAVGVSAAPVSD 794


>gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
 gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
          Length = 870

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 438/806 (54%), Gaps = 39/806 (4%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           M+ DG        ++   V   C GL  + V +  +       +Y G++  +L+     +
Sbjct: 1   MVLDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAET 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    P+YA + AR  +  L ++         +K     ++ LY     +    G  
Sbjct: 61  AAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIEDLYHYVNPKN---GRP 109

Query: 266 ARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 110 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 169

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 170 RVAVGIHGEDVEK---VIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 227 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 286

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 287 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 346

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE++           I A  LW  +L    ETG+P+
Sbjct: 347 LFCPNEAPGLADVYGEEFEALYEKYEKEGRGR-----TTIKAQKLWYAILEAQTETGNPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         ++D+
Sbjct: 402 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 462 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 522 AKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP-------- 573

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 574 --TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 631

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 632 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 691

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 692 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 751

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K+    V   N++       +S
Sbjct: 752 QEQLKVVDTNVARTNAAMRKRVGAAS 777


>gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
 gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
          Length = 886

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/806 (34%), Positives = 435/806 (53%), Gaps = 34/806 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+     
Sbjct: 25  VFPADGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAE 84

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  +    P+YA + AR  +  L ++             H+       +      +E  
Sbjct: 85  TAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLFHYV-NPRNNKPAPMISKETY 143

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  + H          L + + Y+RDF + + G + L   Y L ING   E PQ   MRV
Sbjct: 144 ETVMKHA-------DELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRV 196

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+G+   + EK   A+E Y+L+S  +F  ++PTLF++GT  PQL+SCFL  +  D + GI
Sbjct: 197 AVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFSAGTPQPQLASCFLVDMKEDSIEGI 253

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  
Sbjct: 254 YDTLKTCAMISKNAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGN 313

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF
Sbjct: 314 KRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLF 373

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+E   L D+YG EF+  YE YE++         R + A  LW  +L    ETG+P++ 
Sbjct: 374 CPNEAPGLADVYGDEFDALYEKYEKEGRGR-----RTVKAQKLWYAILEAQTETGNPFML 428

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+ K
Sbjct: 429 YKDACNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGK 488

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + + +A+KSN  HR I LG+ G   A   L +P+ SPEA 
Sbjct: 489 LHEVVQVLVRNLNKIIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAK 548

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   A++AS +LA+E G Y +++GS   QG+   D                
Sbjct: 549 QLNIQIFETIYHGALTASSDLAKELGPYETYEGSPVSQGILQYDMWDRTP---------- 598

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F 
Sbjct: 599 TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQ 658

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A
Sbjct: 659 VVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMA 718

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+   
Sbjct: 719 ADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQE 778

Query: 920 DGKLNAVPVTDPNSS-THSLGIPSSC 944
             K+    V   +++     G P+S 
Sbjct: 779 QLKVADTNVARVSAAYKKRTGAPASS 804


>gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 795

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/822 (33%), Positives = 437/822 (53%), Gaps = 42/822 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     ++ LY     +    
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSAVVEDLYSYVNPKN--- 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G    ++ + +          L + + Y+RDF +++ G + L   Y L ING   E PQ 
Sbjct: 110 GKSQPMISDHVYKVIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++  K   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EFE  YE+YE+Q    E      + A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGDEFEALYESYEKQNKGRE-----TVRAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L +       +
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 FDFQKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA ++  +  E I   A+++S E+A+E G Y +++GS   QG+   D   +       
Sbjct: 522 SEEAKKLNIQIFETIYHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDTECEVC 953
           T+     K+    + +            +  S  +   C +C
Sbjct: 752 TVDQEQLKVADTNIANEARDGDIYADAVLACSIENPESCVMC 793


>gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 872

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/810 (35%), Positives = 438/810 (54%), Gaps = 39/810 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     ++ LY     +    
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQT--------KKQFSAVIEDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++   M +        L + + Y+RDF ++Y G + L   Y L ING   E PQ 
Sbjct: 110 NKAAPMISGEMYETVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  +  EK   A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D
Sbjct: 170 MIMRVAVGIHGENIEK---AIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKSAGGIGLNVHRIRATGSYIGGTNGTSNGLVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E S L D+YG+EF+  YE YER+         R + A  LW  +L    ETG
Sbjct: 347 DWTLFCPNEASGLADVYGEEFDALYEKYEREGRGR-----RTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L      A  +
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A++AS+ELA+E G Y +++GS   QG+   D           
Sbjct: 522 SPEAKQLNIQIFETIYHGALTASIELAKEHGTYETYEGSPVSQGILQYDMWERTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKAQISQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRS 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+ +A++  + 
Sbjct: 692 ILQMAADRGAYIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           T+     K+    V   N  +       + 
Sbjct: 752 TVDQEQLKVEDTNVARANGISKKRSPAPAA 781


>gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 795

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/819 (34%), Positives = 443/819 (54%), Gaps = 33/819 (4%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199
             K+ ++   G     +  ++   +++ C GL    V    +  +    +Y G++ ++L+
Sbjct: 1   MNKMFVIKRGGRNEEVHFDKITSRIQKLCYGLNLDYVDPIAITVKVINGLYSGVTTAELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +     S ++  + P+YA + AR  +  L +E         + +    M  LY       
Sbjct: 61  SLAAEVSASMTTQHPDYAILAARIAVSNLHKET--------KVSFSDVMTDLYNMKNSFN 112

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +        H  ++      L   + YERD+ + Y G + L   Y L ING  +E PQ 
Sbjct: 113 QQPTPMLSDYHYDIIIKHADELNAAIIYERDYNYNYFGFKTLERSYLLKINGKVVERPQH 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+GL   +      A+E YNLLS  +F  ++PTLF++ TR PQLSSCFL T+  D
Sbjct: 173 MLMRVAVGLHGDDIS---SAIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKED 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V
Sbjct: 230 SIDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYV 289

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV QN 
Sbjct: 290 DQGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQ 349

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W L  P     L D +G+EF   Y +YE +         +K+ A +LW  ++    ETG
Sbjct: 350 EWCLMCPKTCPGLSDCWGEEFNKLYLSYEEKGL-----YVKKVKAQSLWYAIIESQVETG 404

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   SS EE AVCNL SI +      +  +
Sbjct: 405 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVKPDKTY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   + L+ VIDI  + + +AK SN  HR IG+G+ G   A  L+ +P+ S
Sbjct: 465 NFEKLKDVTKIITKNLNKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA ++  +  E I + A+ AS ELA   G Y +++GS   +G+   D  G+        
Sbjct: 525 PEAQKLNIQIFETIYYGALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T+   WD LK ++K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +S
Sbjct: 579 ----TNLWDWDALKNKIKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLS 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +  LW++ M + +  + GSI NI+ IP +LK ++ T +EI    +
Sbjct: 635 GEFQVVNQHLLKDLTEIGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ +P+  KL  ++  AW +GLKT  YYLR++ A    + T
Sbjct: 695 LKMAADRGAFIDQSQSLNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFT 754

Query: 916 LKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +        N   V+      +   I  S  +  +C +C
Sbjct: 755 VDKTKVNNANVKEVSTEKDKFNMESISCSLQNKDDCLMC 793


>gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
 gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
          Length = 797

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/821 (35%), Positives = 459/821 (55%), Gaps = 38/821 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL + V    V     + +YDG+S S+L+    
Sbjct: 1   MYVVKRDGHREPVMFDKITERIKKLCYGLNELVDPVKVAMRVIEGLYDGVSTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L            +K+    M+ +Y     R    G
Sbjct: 61  ETAASMTIAHPDYAQLAARVAISNLH--------SNTKKSFSETMKDMYNYVNPRN---G 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+ + +      +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ  
Sbjct: 110 QDAPLIADDVYKVIQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L   +  K  +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSVGIHL---DDLKSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+ETWH D+ +FLDL+KNTG +  R  D+  A W  DLFMKRV +++ 
Sbjct: 287 QGGGKRKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDST 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L+D+YG EFE  Y +YE +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPGLYDVYGDEFEALYTDYEFRGKGR-----KTIRARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S  +++G + SSNLCTEI   +S +E AVCNL SI+L     N +FD+
Sbjct: 402 PYMLYKDAANRKSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             L +  +   R L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S E
Sbjct: 462 QALYNVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS+E+A+E G YS+F+GS   QG F  +  G+  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMSQGEFQYNMWGMKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWASLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L +  LW+E +  ++  H+GS+ NI++IP DLK ++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVKLGLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLN 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG-----IPSSCTSDTECEVC 953
               +  A  +     +          + +      +CE+C
Sbjct: 755 NDKKEETAPSLVQETEAISVEDYKAMLLKAQAADPEDCEMC 795



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 37/239 (15%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  I K    +        + ++ +I+ L +   T  L +
Sbjct: 1   MYVVKRDGHREPVMFD--KITERIKKLCYGLNELVDPVKVAMR-VIEGLYDGVSTSELDN 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y +  + V  +  HS +    +  +K
Sbjct: 58  LAAETAAS------------MTIAHPD-------YAQLAARVAISNLHSNTKKSFSETMK 98

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                +   +G      +  +  +++E  + L    S I+ +  +   Y G    +    
Sbjct: 99  DMYNYVNPRNGQDAPLIADDVYKVIQENAAFL---DSHIIYTRDFNYDYFGFKTLERSYL 155

Query: 202 LIFSSRTLIEKEPNY--AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           L       I + P +   +V+    L+ L + V+ T     +K   H    L+     +
Sbjct: 156 LKI--NGKIVERPQHMLMRVSVGIHLDDL-KSVIETYDLMSKKFFTHATPTLFNAGTPK 211


>gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+]
          Length = 901

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V    +  +    +Y G++ + L+     ++  
Sbjct: 1   DGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAY 60

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++             H+              +E  +  +
Sbjct: 61  MTVTHPDYAILAARIAVSNLHKQTKKQWSSVVSDLYHYV-NPKNGRPSPMIAKETYECVM 119

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
            H+  +D       + + Y+RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+
Sbjct: 120 RHKDDLD-------SAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGI 172

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
              + E   R +E Y  +SS  F  ++PTLFN+GT   QLSSCFL  +  D + GI+  L
Sbjct: 173 WGDDIE---RVIETYTYMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTL 229

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 230 KTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPG 289

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E
Sbjct: 290 AFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNE 349

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+EFE  YE YE++         + I A  LW  +L    ETG+P++ +KD 
Sbjct: 350 CPGLADCYGEEFEALYEKYEKEGRGR-----KTIKAQKLWYAILEAQTETGNPFMLYKDA 404

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLAST 624
           CN +S QQ++GV+ SSNLCTEI   S+ +E AVCNL S+ L         +FD+ KL   
Sbjct: 405 CNRKSNQQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEV 464

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID+N + +++A  SN  HR IGLG+ G   A   L +P+ S EA E+  
Sbjct: 465 TQIVVRNLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNK 524

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A++ S +LA+E+G YS+++GS   +G+   D   +            +   
Sbjct: 525 QIFETIYHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWNVKP----------SDLW 574

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WDELK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 575 DWDELKAEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNP 634

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 635 WLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 694

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A    + T+      +
Sbjct: 695 AFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEALLV 754

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTE 949
               V   +S       P S  S   
Sbjct: 755 QDSAVAKTSSGLKKRAPPGSYMSSPS 780


>gi|289621907|emb|CBI61238.1| putative heterokaryon incompatibility protein [Sordaria macrospora]
          Length = 937

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/808 (34%), Positives = 434/808 (53%), Gaps = 39/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSLVINELYNYVNPK---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +   +  +       + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKHSPMIAKDTYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT   QLSSCFL  +  D
Sbjct: 170 MIMRVAVGIWGDDVE---RVIETYNLMSLKTFTHASPTLFNAGTPQAQLSSCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKR+ QN 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG
Sbjct: 347 TWTLMCPHECPGLADVYGDEFEALYEKYEKEGKGR-----KTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A     N  
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENAS 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID+N + + +A  SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 YDFKKLHEVTQVVVRNLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A++AS +LA+E+G YS+++GS   QG+   D   +       
Sbjct: 522 SPEARKLNIQIFETIYHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                ++   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----SNLWDWAALKADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L +  LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLRDLVEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T+     K     V   +S       P+
Sbjct: 752 TVDQEALKATDDQVAPAHSGLKKRAPPA 779


>gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger
           CBS 513.88]
 gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger]
          Length = 865

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/815 (34%), Positives = 438/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      Y+  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYVNP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                    S   +++       L + + Y+RDF + + G + L   Y L ING   E P
Sbjct: 108 KNNQPAPMISKETYEIIMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVAVGIHGSDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIDGIYDTLKTCAMISKTAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEA 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EF+  YE YE++         R I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFDALYEKYEKEGRGR-----RTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E I    ++AS +LA+E G Y +++GS   QG+   D         
Sbjct: 520 FDSAEARQLNIQIFETIYHAGLTASSDLAKEFGTYETYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWAALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RTILQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + T+     K+    V   N++     + ++ ++ 
Sbjct: 750 QFTVDQEQLKVEDTNVARTNAAYKKRAVGAASSTY 784


>gi|17555242|ref|NP_499039.1| RiboNucleotide Reductase family member (rnr-1) [Caenorhabditis
           elegans]
 gi|417657|sp|Q03604|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|3880121|emb|CAA79574.1| C. elegans protein T23G5.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 788

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/816 (34%), Positives = 444/816 (54%), Gaps = 47/816 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG     +  ++   +++   GL    V    V  +    +Y G++  +L+     
Sbjct: 9   VVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAAE 68

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++  + P YA + AR  +  L ++          K     M+ L+  +       G 
Sbjct: 69  TAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPH---TGK 117

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            A ++ +    +++ +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ   
Sbjct: 118 HAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQML 177

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRV++G+   +      A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 178 MRVSIGIHGDDI---TSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSI 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 235 LGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQ 294

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 295 GGNKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEW 354

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P E   L D +G+EFE  Y  YE +       V + + A  LW  +++   ETG P
Sbjct: 355 SLMCPCECPGLDDCWGEEFEALYAKYEAEGR-----VRKTVKARKLWEHIVSNQIETGLP 409

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           +IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L  +     +FD+
Sbjct: 410 YITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDF 469

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KLA   +   R L+ +ID+N + +E+A+ SN  HR IGLG+ G      L+  P+ S E
Sbjct: 470 VKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAE 529

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+          
Sbjct: 530 ARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTP-------- 581

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T +  W  L+K++   G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +SGD
Sbjct: 582 --TDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGD 639

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  ++ +L +R LW + M + L  ++GSI NI+ IP D+K+++ T +EI    +IE
Sbjct: 640 FQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIE 699

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T+ 
Sbjct: 700 MAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVD 759

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K N    T    +          + D  C +C
Sbjct: 760 KNALKTNQQAETPATVAE---------SQDEGCLMC 786


>gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 929

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/808 (34%), Positives = 439/808 (54%), Gaps = 39/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     R    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSLVISELYNYVNPR---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ + + +  +       + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MIMRVAVGIWGDDVE---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG
Sbjct: 347 QWTLMCPHECPGLADVYGDEFEALYEKYEKEGKGR-----KTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENAS 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 YDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +       
Sbjct: 522 SDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + 
Sbjct: 692 IVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T+     +     V   +S       P+
Sbjct: 752 TVDQEALRATDDRVAPAHSGLKKRSPPA 779


>gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 817

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/844 (34%), Positives = 450/844 (53%), Gaps = 64/844 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H                
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFNHVND-----------RS 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + D    +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ 
Sbjct: 110 GLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SAIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           +QGG KRK GA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N
Sbjct: 287 DQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERVQSN 346

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+LF P+E   L D +G EFE  Y  YER+         + + A  LW ++LT   ET
Sbjct: 347 GQWSLFCPNEAPGLADCWGAEFETLYTKYEREGK-----AKKVVQAQQLWYEILTSQVET 401

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611
           G P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L         
Sbjct: 402 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGV 461

Query: 612 ---------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
                           N  FD+DKLA    T    L+ +ID+N + +E AK SN  HR I
Sbjct: 462 PLDSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNLNKIIDVNYYPVETAKTSNMRHRPI 521

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS  
Sbjct: 522 GIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPV 581

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+   D   ++           ++R  W  L+  +   G+RNS  +A  PTA+ + I 
Sbjct: 582 SKGILQPDMWNVIP----------SNRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQIL 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  
Sbjct: 632 GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAE 691

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IPDDLK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  G
Sbjct: 692 IPDDLKAIYRTVWEIKQRTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKG 751

Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTE 949
           LKT  YYLRSR+A    K T+     K           V + ++ T    +  S T+  +
Sbjct: 752 LKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPDD 811

Query: 950 CEVC 953
           C  C
Sbjct: 812 CLAC 815



 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGG--VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  + K    +        +  Q +   + +   T  L  
Sbjct: 1   MYVVKRDGRQETVHFD--KITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDE 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y    + +  +  H  +    +  +K
Sbjct: 59  LAAETAAA------------MTCNHPD-------YASLAARIAVSNLHKNTKKSFSETIK 99

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                +    G      +  +  I+ +  + L    S+I+    ++  Y G    +
Sbjct: 100 DMFNHVNDRSGLKSPLIADDVFDIIMQNAARL---DSEIIYDRDFEYDYFGFKTLE 152


>gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
 gi|30316299|sp|Q9UW15|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene)
           [imported] - Neurospora crassa
 gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24)
           [Neurospora crassa]
 gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
          Length = 929

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/808 (34%), Positives = 439/808 (54%), Gaps = 39/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     R    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSLVISELYNYVNPR---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ + + +  +       + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MIMRVAVGIWGDDVE---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG
Sbjct: 347 QWTLMCPHECPGLADVYGDEFEALYEKYEKEGKGR-----KTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENAS 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 YDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +       
Sbjct: 522 SDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + 
Sbjct: 692 IVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T+     +     V   +S       P+
Sbjct: 752 TVDQEALRATDDRVAPAHSGLKKRSPPA 779


>gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
 gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
          Length = 874

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/811 (34%), Positives = 436/811 (53%), Gaps = 39/811 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSSVIDDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ E   +  +     L + + Y+RDF ++Y G + L   Y L  NG   E PQ 
Sbjct: 110 GRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ EK    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D
Sbjct: 170 MIMRVAVGIHGEDVEK---VIESYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EFE  YE YE++           I A  LW  +L    ETG
Sbjct: 347 EWTLFCPNEAPGLADVYGEEFEALYEKYEKEGRGR-----TTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L         +
Sbjct: 402 NPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  V+ L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVTQVVVKNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +       
Sbjct: 522 SPEAKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDALKTEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           T+     K+    V   N +       +  T
Sbjct: 752 TVDQEQLKVVDTNVARANGAMRKRVAAAGST 782


>gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
 gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus
           oryzae RIB40]
 gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 854

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/815 (34%), Positives = 440/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      YI  
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYINP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             K      S   +++       L + + Y+RDF + + G + L   Y L I+G   E P
Sbjct: 108 KNKKPAPMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRV++G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEA 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EFE  YE YE++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFEALYERYEKEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +IDIN + + +AK SN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I   A++AS +LA++ G Y S++GS   QG+   D         
Sbjct: 520 FDSPEAKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RSILQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + T+     K+    V   N+S     + ++  + 
Sbjct: 750 QFTVDQEALKVADTNVARANASFRKRAVGAASNTY 784


>gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis]
 gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis]
          Length = 810

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/837 (33%), Positives = 453/837 (54%), Gaps = 47/837 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
             +       L ++  +G        ++   + + C GL++  V    +  +    +Y G
Sbjct: 1   MSNQDTYNDDLYVLKRNGDSERVYLDKITSRISKLCYGLKNEFVKPINITMKVISGIYQG 60

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +  ++L+T    ++ ++  K P+YA + AR  +  L +E         +K     M+ LY
Sbjct: 61  VKTTELDTLAAETAASMTTKHPDYAILAARIEVSNLHKET--------KKVFSEVMEELY 112

Query: 253 PEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
                +       + L+ +  +D        L + + Y+RD+ + Y G + L   Y L I
Sbjct: 113 NYVNPKN---NKHSPLISKETLDIIQKHADRLNSAIIYDRDYQYNYFGFKTLMRSYLLKI 169

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           NG   E PQ   MRV++G+  ++ +    A+E YNL+S   F  ++PTLFN+GT  PQ+S
Sbjct: 170 NGKVAERPQHMLMRVSVGIHGEDIDA---AIETYNLMSEKWFTHASPTLFNAGTNRPQMS 226

Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL T+  D + GI+G L+  A+++K +GG+G +   +R  G++I GTNG S G++P L
Sbjct: 227 SCFLLTMSDDSIEGIYGTLRTCALISKNAGGIGVNVHCIRAAGSYIAGTNGHSNGLVPML 286

Query: 429 KVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +V + TA  V+QG  KR GA   YLE WH D+ EFLDL+KNTG + +R  D+  A WIPD
Sbjct: 287 RVYDSTARYVDQGGNKRPGAFAIYLEPWHADILEFLDLKKNTGKEEQRARDLFYALWIPD 346

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  +  W+L  P++   L D YG++FE  YE YE Q         R+I A  LW 
Sbjct: 347 LFMKRVEADGMWSLMCPNQCPGLQDCYGEKFEKLYEKYESQGK-----YMRQIKAQKLWF 401

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   S+ +E AVCNL SI L
Sbjct: 402 AILESQTETGTPYMLYKDACNSKSNQKNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIAL 461

Query: 608 LAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                 +    +F++ KL    +   + L+ +ID+N + + +A+KSN  HR IG+G+ G 
Sbjct: 462 NRFVNVDKSPPEFNFQKLFEVTQVVTKNLNKIIDVNYYPVPEARKSNFRHRPIGIGVQGL 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             A  L+  P+ S +A E+     E I + A++AS +LA   G Y +++GS   QG+   
Sbjct: 522 ADAFILMRYPFESQKAQELNKLIFETIYYGAVTASCDLAATNGPYETYEGSPASQGLLQY 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D   +            ++   W+ LKK+VK  G+RNS  +A  PTA+ A I G ++SI+
Sbjct: 582 DLWNVTP----------SNLWDWEALKKKVKEHGLRNSLLIAPMPTASTAQILGNNESIE 631

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y +  +SG+F +VN  L+ +L +  LW++ M + L  ++GSI +I+ IP DLK 
Sbjct: 632 PYTSNIYSRRVLSGEFQIVNHHLLKDLTEMGLWNDGMKNQLIANNGSIQDIKEIPADLKA 691

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           ++ T +EI    LI+ A+ R  +IDQ+QS N+++ +P+  KL  ++   W  GLKT  YY
Sbjct: 692 LYKTVWEIKQRVLIDMAADRGAFIDQSQSFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYY 751

Query: 903 LRSRSATSVEKSTLK----GVDGKLNAVPVTDPNSSTHSLGIPSSC--TSDTECEVC 953
           LRSR A +  + T+           ++ P ++           ++C   +   C +C
Sbjct: 752 LRSRPAVNAIQFTVDQTALAKKKASDSSPTSNEEKPKKDEDAAAACRRDNPDGCLMC 808


>gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma
           linguale DSM 74]
 gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma
           linguale DSM 74]
          Length = 826

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/852 (34%), Positives = 454/852 (53%), Gaps = 71/852 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C GL    V    V  +    +YDG+  ++L+   
Sbjct: 1   MFVVKRDGRRESVKFDKITARIEKLCYGLDPAYVQPVEVAVKVVSGLYDGVKTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +E   +     +K   +E             + 
Sbjct: 61  AETAASMTTKHPDYAILAARIAISNLHKETNKSFSGTIKKLYQYEDP-----------KT 109

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + D    +   L + + Y+RD+ ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GENASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYFGYKTLEKSYLLKLDGRIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNLLS   F  +TPTLFN+GT  PQ+SSCFL T+  D
Sbjct: 170 MLMRVAVGIHQEDIE---SAIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G +I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+ +FLDL+KN+G +  R  D+  A W PDLFMKRV  + 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDD 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D YG EFE  Y  YER+         R I A  LW K+L    ETG
Sbjct: 347 VWSLFCPHECPGLADCYGDEFEELYTRYEREGRAR-----RTIKAQELWFKILESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L          
Sbjct: 402 TPYMLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDG 461

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +FD+ KL    +TA R L+ +IDIN + +E+A++SN  HR IGLG+ G   A  +L +
Sbjct: 462 IMRFDHQKLYEVTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRM 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA  + ++  E I F A+++S+E A+E G Y ++KGS   QG+F  D  G+  + 
Sbjct: 522 PFESEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKPK- 580

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   ++R  W+ L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 581 --------SNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L +  LW++AM ++L   +GSI  I  IP ++K ++ T +EI 
Sbjct: 633 RVLSGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIK 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QSLN+++ + +  KL  ++  AW  GLKT  YYLR+++A   
Sbjct: 693 QKHIIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADA 752

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHS------------------------------LGIP 941
            K T+     +    PV     +                                   + 
Sbjct: 753 VKFTVVQPQAEPQLEPVMAEAVTVEKPLDYVQYAKEHAQNATPQPVPMVTDLEQQYAAMT 812

Query: 942 SSCTSDTECEVC 953
            S      CE+C
Sbjct: 813 CSLDDPEGCEMC 824


>gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
 gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
          Length = 819

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/816 (36%), Positives = 456/816 (55%), Gaps = 34/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL + V    V     + +YD ++ S+L+    
Sbjct: 1   MYVVKRDGRKEPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDNVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K     M  LY     R    G
Sbjct: 61  EIAATMTTSHPDYAKLAARISVSNLHKNT--------KKTFSEVMTDLYEYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + +      +   L + + Y RDF+++Y G + L   Y L +NG   E PQ  
Sbjct: 110 EKAPLLSDEVYKVIIENKEKLDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ + + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSIGIHIDDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A W+PDLFMKRV QN  
Sbjct: 287 QGGGKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEK 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P E   L D YG+EFE  YE YE +         + I A  LW K+     ETG 
Sbjct: 347 WTLMCPQECPGLFDTYGEEFEKLYEKYEAENKGR-----KTIKARELWEKITESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      N+FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR +GLG+ G       L +P+ S +
Sbjct: 462 KELFKITKRVTKNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDK 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS+ELA+E G YS+FKGS   +G F  +  G+  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASMELAKEEGPYSTFKGSPISEGEFQYNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + + R  W +L+K+V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 DLSGRWDWGKLRKQVMKEGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L  R+LWD+ + + +  ++GS+ +I+ IPDDLK+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVSRNLWDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TL+
Sbjct: 695 MSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLE 754

Query: 918 GVDGKLNAVPVTD-PNSSTHSLGIPSSCTSDTECEV 952
               K   V V++ P  +   L          E E 
Sbjct: 755 KEKKKEPIVAVSEAPAKAAEKLQAAPKPVISQESEA 790


>gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 859

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/815 (34%), Positives = 437/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY      Y+  
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYVNP 107

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                    S   +++       L + + Y+RDF + Y G + L   Y L I+G   E P
Sbjct: 108 KNNNPAPMISKETYEIVMKHADELNSAIVYDRDFNYNYFGFKTLERSYLLRISGKVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  + 
Sbjct: 168 QHLLMRVAVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 225 EDSIEGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  
Sbjct: 285 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEA 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF P+E   L D+YG EF+  YE YE++           I A  LW  +L    E
Sbjct: 345 NGDWTLFCPNEAPGLADVYGDEFDALYERYEKEGRGRS-----TIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--AN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      A 
Sbjct: 400 TGNPFMLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAAR 459

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++D+ KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P
Sbjct: 460 GEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLP 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I   A++AS ELA++ G Y +++GS   QG+   D         
Sbjct: 520 FDSPEARQLNTQIFETIYHGALTASCELAKQLGPYETYEGSPVSQGILQYDMWDRTP--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 577 -------TDLWDWDSLKAKIAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 629

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI  
Sbjct: 630 VLAGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQ 689

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  
Sbjct: 690 RNILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPI 749

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + T+     K+    V   N +       ++  + 
Sbjct: 750 QFTVDQEQLKVADTNVARANPAFKKRAAGATPNAY 784


>gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 894

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/793 (34%), Positives = 428/793 (53%), Gaps = 33/793 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+       +      ++
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSSVVSDLYHYV-NPKNNKPSPMIAKD 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
              A + H+         L + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 120 TYDAVMRHK-------EELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E   R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVE---RVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S GV+P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YE+          + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQMGKGR-----KTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD  N +S Q+++G + SSNLCTEI    + +E AVCNL S+ L          +D+
Sbjct: 405 MLYKDAANRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVTQVVVRNLNRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++ SV+LA+E G Y +++GS   QG+   D   +          
Sbjct: 525 ARDLNKKIFETIYHAALTMSVQLAREEGPYETYEGSPVSQGILQYDMWNVKP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWDALKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP ++K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTD 930
               K+    V  
Sbjct: 755 QEALKVADSAVGK 767


>gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 854

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/782 (35%), Positives = 428/782 (54%), Gaps = 35/782 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++  T  Y K  K  +  +      +     +E
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQT-TKQYSKVSKDLYEYINPKTGLHSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + HE         L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 120 TYDIIMEHE-------DELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +     R +E YNL+S   F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGNDIP---RVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEKENRGR-----QTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L +   N++    +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TELWDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LK 917
           + 
Sbjct: 755 ID 756


>gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
 gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans]
 gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
          Length = 854

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/782 (35%), Positives = 428/782 (54%), Gaps = 35/782 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++  T  Y K  K  +  +      +     +E
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQT-TKQYSKVSKDLYEYINPKTGLHSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + HE         L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 120 TYDIIMEHE-------DELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +     R +E YNL+S   F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGNDIP---RVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEKENRGR-----QTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L +   N++    +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TELWDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LK 917
           + 
Sbjct: 755 ID 756


>gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 796

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/825 (35%), Positives = 440/825 (53%), Gaps = 47/825 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    V    V  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRRERVAFDKITSRINKLCYGLDMNYVDPAEVAQKVVTGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P+YA + AR  +  L +E         +K     MQ LY     +  + 
Sbjct: 61  AETTAYLTTKHPDYAILAARIAISNLHKET--------KKQFSSVMQDLYEYVNPKNNKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +  +   L + + Y+RDF + + G + L   Y L IN    E PQ   M
Sbjct: 113 SPMISKTTFDCILKNADRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E     +E YNL+S  +F  ++PTLFN+GT +PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIHGDDVEA---VIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYSTLKTCAMISKTAGGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKNTG +  R  D+  A WIPD+FM+RV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D++G EF+  YE YER+         + I A  LW  +L    ETG P+
Sbjct: 350 LFCPAEAPGLDDVWGDEFDALYEKYEREGRAR-----KIIKAQKLWYAILDSQSETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           + +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL S+ L      +      
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPV 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+DK+  T + A   L+ +I++N + +E+AK+SN  HR IGLG+ G       + +P+ 
Sbjct: 465 FDFDKMIDTTKIATYNLNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I F A++AS ELA+  G Y ++ GS   +G+   D           
Sbjct: 525 SPEAKKLNIQIFEAIYFAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWN-------- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  + +  W  L+  +   G+RNS  +A  PTA+ + I G +++ +P   N+Y++  +
Sbjct: 577 --VKVSDQFDWPTLRANIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F +VN  L+ +L +  LW+E+M + +   +GSI NI  IP  LK I+ T +EI    
Sbjct: 635 SGEFQIVNQHLLKDLTELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKV 694

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN++L E +  KL  ++   W  GLKT  YYLRSR A    K 
Sbjct: 695 IIDMAADRGAFIDQSQSLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKF 754

Query: 915 TL------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+      +G + K N V   +     +   +  S  +   C  C
Sbjct: 755 TVDKQSLTQGAEDKNNVVASVN-----NMTDMLCSLENRDACMSC 794


>gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa]
 gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/843 (34%), Positives = 454/843 (53%), Gaps = 62/843 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          QK+    ++ +Y  +  +    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------QKSFSETIKIMYNHFNDK---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLKAALIADDIYEIIMKNSARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSAHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +GKEFE  Y  YER          + + A  LW ++L    ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGKEFEELYTRYERNGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH------- 610
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVP 461

Query: 611 -------------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                        F +  FD++KLA         L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 VESHPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNKIIDVNYYPVETARRSNFRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL + + SPEA ++  +  E I +HA+ AS E+A   G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+                 WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVTPSNL---------LWDWDALREMISKNGVRNSLLLAPMPTASTSQILG 632

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+ NI  I
Sbjct: 633 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEI 692

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+DLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 693 PNDLKFIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 752

Query: 898 KT-TYYLRSRSATSVEKSTLKGV---DGKLNA---VPVTDPNSSTHSLGIPSSCTSDTEC 950
           KT  YYLRSR+A    K T+      D KL +         +  T    +  S  +  +C
Sbjct: 753 KTGMYYLRSRAAADAIKFTVDTSVLQDKKLKSDGAAAAAADDDDTKMAQMVCSLANRDDC 812

Query: 951 EVC 953
             C
Sbjct: 813 LAC 815


>gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit [Ascaris suum]
          Length = 790

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/820 (34%), Positives = 435/820 (53%), Gaps = 49/820 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
           P   ++  DG     +  ++   +E+ C GL    V    V  +    ++ G+S   L+ 
Sbjct: 9   PSTYVVKRDGRREGVHFDKIAHRIEKLCYGLNPDYVDYIEVSQKVIAGLFKGVSTVQLDN 68

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++  +  K P+YA + AR  +  L ++         +K        LY  +  +  
Sbjct: 69  LAAETAADMTTKHPDYAILAARIAISNLHKQT--------KKMFSEVATVLYNAHHPK-- 118

Query: 261 EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             GV   ++ + + D    +   L + + ++RDF+F Y G + L   Y L +NG  +E P
Sbjct: 119 -TGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFKTLERSYLLKMNGEPVERP 177

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q  FMRVA+G+  ++ +    A+E YNL+S   F  +TPTLFNSGTR PQ+SSCFL T+ 
Sbjct: 178 QHLFMRVAVGIHKEDIDA---AIETYNLMSERWFTHATPTLFNSGTRLPQMSSCFLLTMQ 234

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GIF  L++ A+++K +GG+G +   +R  G+ I GT+G S G++P L+V N+TA 
Sbjct: 235 EDSIEGIFDTLKKCALISKSAGGIGLNVHCIRATGSSIAGTSGVSNGLVPMLRVFNNTAR 294

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ E+LDLRKN GD+  R  D+    W+PDLFM+RV  
Sbjct: 295 YVDQGGNKRPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGLWVPDLFMQRVRD 354

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P E   L D +G EFE  Y  YE +         ++I A  LW  ++T   E
Sbjct: 355 NGKWSLMCPAECRGLEDCWGDEFEKLYSKYEAEGR-----YRKQIEARRLWEAIITAQIE 409

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NN 614
           TG P++ +KD CN +S QQ+VG +  SNLCTEI   SS  E AVCNL SI L        
Sbjct: 410 TGVPYMVYKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLASIALNRFVTTEK 469

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            FD+ KL    +   R L+ +ID N + + +AK SN  HR IG+G+ G   A  L+  P+
Sbjct: 470 TFDFKKLHEVTKVVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQGLADAFMLMRYPF 529

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A E+     E I   A+ AS ELA++ G Y S++GS   +G+   D  G       
Sbjct: 530 TSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPISKGILQQDMWG------- 582

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +  T +  WD L+  +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y ++ 
Sbjct: 583 ---VEPTDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNV 639

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F + N  L+ +L    LWD+ M  ++  H GS+  IERIP +++ ++ T +E+   
Sbjct: 640 LSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIRNLYKTVWELSQK 699

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+QSLN+++ +PS      ++   W  GLKT  YYLR+R A    +
Sbjct: 700 DIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMYYLRTRPAVDAVQ 759

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+     K             ++  +  + +    C +C
Sbjct: 760 FTVDKTRLK-----------EVNAKMLECALSDPEGCVMC 788


>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]
          Length = 798

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/822 (35%), Positives = 445/822 (54%), Gaps = 39/822 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     +  ++   +++ C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVLKRGGRQEDVHFDKITSRIQKLCYGLNSDFVDPTAITMKVINGLYPGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +K     +  LY        + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKET--------KKVFSEVIDDLYNMKNKITKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++      L + + Y+RDF F Y G + L   Y L I+G  +E PQ   M
Sbjct: 113 TPMISDFHHGIITKHSDKLNSAIIYDRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+  ++ +    A+E YNLLS   F  ++PTLF + T  PQLSSCFL T+  D + 
Sbjct: 173 RVSVGIHGEDIDA---AIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKQCAIISKSAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D +G+EFE  Y  YE           RK+ A  LW  ++    ETG P+
Sbjct: 350 LMCPHECPGLADTWGEEFEALYTKYEESGM-----YRRKVKAQQLWFAVIESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           I +KD CN +S QQ++G +  SNLCTEI   SS EE AVCNLGSI L      +  FD  
Sbjct: 405 ILYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIP 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ +I+IN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLKEVTKVLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +     E I + A+ AS ELA++ G Y S+ G    +G+   D  G+           
Sbjct: 525 QLLNKHIFETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LKK++   G+RNS  +A  PTA+ A I G ++SI+    N+YV+  +SG+F
Sbjct: 576 -TDLWDWAALKKKINEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +  LW+E + + +  ++GSI NI+ IPDDLK ++ T +EI    +I+ 
Sbjct: 635 QVVNHHLLRDLTEGGLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-- 916
           A+ R  +IDQ+QSLN+++ EP+  KL  ++  +W +GLKT  YYLR++ A S  + T+  
Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDK 754

Query: 917 ---KGVDGKLNAVPVTDPNSSTH--SLGIPSSCTSDTECEVC 953
              K ++G  N+   T+ N         +  S  +  +C +C
Sbjct: 755 SKLKKMNGVDNSAGATNGNDEEKRNREAMVCSLQNRDDCLMC 796


>gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
 gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
          Length = 812

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/836 (34%), Positives = 448/836 (53%), Gaps = 53/836 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MFVVKRDGRKEPMMFDKITSRVRKLCYGLNNLVDPVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YA++ AR  +  L +          +K+    M  LY     R    G
Sbjct: 61  EIAATMTTTHPDYARLAARISVSNLHKNT--------KKSFSETMVDLYEYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + + +    +   L + + Y RDF ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKAPLLSDEVYNVIMENADRLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSVGIHLNDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVYNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV +N  
Sbjct: 287 QGGGKRKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGP 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  +L +++ +EFE  Y  YE +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPNLFNVHSEEFEALYLKYEAEGKGR-----KTIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       +FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR IGLG+ G       L +P+ S E
Sbjct: 462 KELFRVTKRVTKNLNKVIDRNYYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS+E+A+  G Y +++GS   +G F  +  G+  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASMEMAKIEGPYQTYEGSPMSKGEFQHNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W +L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWGKLRKQVAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LW E +  +L   +GSI +I+ IP D+K ++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVNLGLWTEDLKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K T+K
Sbjct: 695 MSRHRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVK 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS--------------------DTECEVC 953
                +          S  + G   +  +                    D +C +C
Sbjct: 755 KAKKSIAVPAEAAAGISVQTTGSKPAPVAVEPLTPEEMKEMIARAKDGQDDDCLMC 810


>gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative;
           ribonucleotide reductase large subunit 1, putative;
           ribonucleotide reductase r1 subunit 1, putative [Candida
           dubliniensis CD36]
 gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative
           [Candida dubliniensis CD36]
          Length = 854

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/782 (35%), Positives = 427/782 (54%), Gaps = 35/782 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++  T  Y K  K  +  +      +     +E
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQT-TKQYSKVSKDLYEYINPKTGLHSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + HE         L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 120 TYDIIMEHE-------DELNSAIVYDRDFSYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +     R +E YNL+S   F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGNDIP---RVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTRYEKENRGR-----QTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQF 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L +       N  +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHDVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ ASVELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASVELAKEEGAYETYPGSPASQGLLQFDLWNRKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TELWDWDTLKQNLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LK 917
           + 
Sbjct: 755 ID 756


>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans]
 gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]
          Length = 812

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/826 (35%), Positives = 442/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +KA     + LY        +
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   LH+++G EFE  YE YE++         R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLHEVWGDEFEKLYEKYEQEGRAN-----RTVKAQSLWFAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 917 --------KGVDGKLNAVPVT-DPNSSTHSLGIPSSCTSDTECEVC 953
                    G +G     P   + +       +  S  +   C  C
Sbjct: 765 KKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|114635717|ref|XP_001159515.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 1
           [Pan troglodytes]
          Length = 779

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/805 (36%), Positives = 454/805 (56%), Gaps = 39/805 (4%)

Query: 159 SKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216
             ++   +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+Y
Sbjct: 2   FDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDY 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
           A + AR  +  L +E         +K     M+ LY          G  + ++ +S +D 
Sbjct: 62  AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDI 110

Query: 277 DL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            L     L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ 
Sbjct: 111 VLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI 170

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAM 392
           +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+
Sbjct: 171 DA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 227

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAY 451
           ++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   Y
Sbjct: 228 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 287

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L 
Sbjct: 288 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 347

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG P++ +KD CN +S
Sbjct: 348 EVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKS 402

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVR 630
            QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR
Sbjct: 403 NQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVR 462

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I
Sbjct: 463 NLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 522

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            + A+ AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK
Sbjct: 523 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLK 572

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L
Sbjct: 573 EKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDL 632

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+
Sbjct: 633 TERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQS 692

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPV 928
           QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL K        V  
Sbjct: 693 QSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSK 752

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVC 953
            +     ++  +  S  +  EC +C
Sbjct: 753 EEEEKERNTAAMVCSLENRDECLMC 777


>gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 865

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/796 (35%), Positives = 432/796 (54%), Gaps = 43/796 (5%)

Query: 150 DDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            DG        ++   V   C GL  + V +  +  +    +Y G++  +L+     ++ 
Sbjct: 20  TDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAA 79

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            +    P+YA + AR  +  L ++         +K     +  LY      Y+    K  
Sbjct: 80  YMTVTHPDYAILAARIAVSNLHKQT--------KKQFSLVISDLY-----HYVNPKNKKP 126

Query: 268 LLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
               S   +++       L + + Y+RDF + + G + L   Y L ++G   E PQ   M
Sbjct: 127 APMISKETYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLM 186

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E   RA+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 187 RVAVGIHGNDIE---RAIETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSID 243

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 244 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 303

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 304 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 363

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EF+  YE YE++         R I A  LW  +L    ETG+P+
Sbjct: 364 LFCPNEAPGLADVYGDEFDALYEQYEKEGRGR-----RTIKAQKLWYAILEAQTETGNPF 418

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L      +  ++D+
Sbjct: 419 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDASRGEYDF 478

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ S E
Sbjct: 479 GKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAE 538

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS  LA+E G Y S++GS   QG+   D              
Sbjct: 539 AKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDMWERTP-------- 590

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 591 --TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 648

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IPDD+K ++ T +EI    ++E
Sbjct: 649 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILE 708

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 709 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 768

Query: 918 GVDGKLNAVPVTDPNS 933
               K+    V   + 
Sbjct: 769 QEQLKVADTNVARTSK 784


>gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei]
 gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei]
          Length = 786

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/816 (34%), Positives = 445/816 (54%), Gaps = 49/816 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG +   +  ++   +++   GL    V    V  +    +Y G++  +L+     
Sbjct: 9   VVKRDGRMEDVHFDKITSRIQKLSYGLNMEFVDPVAVAIKVISGLYKGVTTVELDNLAAE 68

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++  + P YA + AR  +  L ++          K     M+ L+  +       G 
Sbjct: 69  TAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPH---TGK 117

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            A ++ +    +++ +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ   
Sbjct: 118 HAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQML 177

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRV++G+  ++      A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 178 MRVSIGIHGEDI---AAAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSI 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 235 LGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQ 294

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV EF+ LRKNTG +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 295 GGNKRPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQNW 354

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P E   L D +G+EFE  Y  YE +       V + + A  LW  +++   ETG P
Sbjct: 355 SLMCPCECPGLDDCWGEEFEALYAKYEAEGR-----VRKTVKARKLWEHIVSNQIETGLP 409

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           +IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L  +     +FD+
Sbjct: 410 YITYKDAANRKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLASIALNRYVTPEKKFDF 469

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KLA   +   + L+ +ID+N + +E+A+ SN  HR IGLG+ G      L+  P+ S +
Sbjct: 470 KKLAEVTKVITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSKQ 529

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+          
Sbjct: 530 ARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP-------- 581

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T +  W  L+K++ T G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +SGD
Sbjct: 582 --TDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGD 639

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  ++ +L +R LW + M + L  ++GSI NI  IP D+K+++ T +EI    +IE
Sbjct: 640 FQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIKELYLTVWEISQKEIIE 699

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T+ 
Sbjct: 700 MAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAVNAVQFTVD 759

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K    P            + +    D  C +C
Sbjct: 760 KGALKAKVDP-----------KVAALQQQDEGCLMC 784


>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia]
 gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]
          Length = 812

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/826 (35%), Positives = 443/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +KA     + LY        +
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   LH+++G EFE  YE YE++         R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLHEVWGDEFEKLYEKYEQEGRAN-----RTVKAQSLWFAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  GAY +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 917 --------KGVDGKLNAVPVT-DPNSSTHSLGIPSSCTSDTECEVC 953
                    G +G     P   + +       +  S  +   C  C
Sbjct: 765 KKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata]
          Length = 810

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/837 (34%), Positives = 450/837 (53%), Gaps = 57/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRPEAVHFDKITARLKKLSYGLTQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKLMYHHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G +A L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GQEAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVSGMVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     +  K  +  Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIH---KDDIKSVIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFL+LRKN G +  R  D+  A WIPDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YE +         + ++A  LW ++L    ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGDEFEKLYLKYEDEGK-----AKKVVAAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKL          L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 LESHPSRLVGSSGSKNRYFDFDKLGEVTAIITENLNKIIDVNYYPVETARRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I +HA+ +S E+A   G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   +            + R  W  L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVT----------LSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PD+LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 PDNLKAIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+     +    PV D +       +  S  +  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTSLLQKTTKPVEDDDVEAKMAQVVCSLENREECMAC 808


>gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
 gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
          Length = 803

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/834 (34%), Positives = 449/834 (53%), Gaps = 58/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++    L        IV  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR ++  L ++         +K+    ++ +Y     R    
Sbjct: 61  AETAASMTTSHPDYAILAARIVVSNLHKKT--------KKSFSETVKEMYSHVDER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+   + D    +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ 
Sbjct: 110 GLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV ++LDL+KN G +  R  D+    WIPDLFM+RV  N+
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNS 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EFE  Y  YER+         R +SA  LW  +L    ETG
Sbjct: 347 DWSLFCPNEAPGLADCWGEEFESLYTRYEREGR-----AKRSLSAQKLWFAILESQMETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
           +P++ FKD CN +S QQ++G +  SNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 NPYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGIN 461

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+ KLA         L+ +IDIN + ++ AK+SN  HR IG+G+
Sbjct: 462 SETKLVGSKGCKNRVFDFHKLAEVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGV 521

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL +P+ S EA ++  +  E I +HA+  S  LA+  G Y ++ GS   +GV
Sbjct: 522 QGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSILAELYGVYETYPGSPVSKGV 581

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  D   ++           + R  W  LK+ V   G+RNS  +A  PTA+ + I G ++
Sbjct: 582 FQPDMWNVIP----------SGRWDWAALKEMVARHGVRNSLLVAPMPTASTSQILGNNE 631

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+N+L    +W   + + +  ++GSI +IE IPDD
Sbjct: 632 CFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDD 691

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+I+ T +EI    +++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT 
Sbjct: 692 LKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTG 751

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRS++A    K T+     K      T          +  S  +   C  C
Sbjct: 752 MYYLRSQAAADAIKFTVDTASLK----SPTKTTDEELLAQMVCSLENRENCLAC 801


>gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis]
 gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis]
          Length = 797

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/824 (34%), Positives = 447/824 (54%), Gaps = 44/824 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSK- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++    +D  L     L + + Y+RDF++ + G + L   Y L ING   E PQ 
Sbjct: 112 --HSPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKTDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV +FLDL+KNTG + +R  D+  A WIPDLFMKR   N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNL 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L +++G +FE  YE YER+         + + A  +W  ++    ETG
Sbjct: 347 DWSLMCPHECPGLEEVWGDKFEELYEKYEREGR-----TRKVVKAQQVWHAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  +  +  E I + A+ +S ELA+E G Y +++G    +G+   D   +        
Sbjct: 522 EKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L ++ LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 ITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K   +               +   +  S  +  EC +C
Sbjct: 752 LNKEKLKEKELITMETTEKDKEEKEKNKAAMVCSLENRDECLMC 795


>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta]
 gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]
          Length = 812

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/826 (35%), Positives = 442/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +KA     + LY        +
Sbjct: 71  AAEIAAGLTCYHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVSLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D++G EFE  YE YE++         R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLQDVWGDEFEKLYEKYEQEGRAN-----RTVKAQSLWYAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 917 --KGVDG-------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             KG +G          +    + +       +  S  +   C  C
Sbjct: 765 KKKGAEGINGQNGTSDESSKQFEEDRERKMADMVCSLENKDACMSC 810


>gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus]
          Length = 762

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/781 (37%), Positives = 449/781 (57%), Gaps = 38/781 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++  S +D    +   L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 LKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L 916
           L
Sbjct: 752 L 752


>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba]
 gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]
          Length = 812

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/826 (35%), Positives = 439/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +K      + LY        +
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKVFSDVFEDLYEHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D++G EFE  YE YE++         R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLQDVWGDEFEKLYEKYEQEGRAN-----RTVKAQSLWFAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   + L+ +IDIN + + +AKKSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 918 GVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953
              G +     N      P     +       +  S  +   C  C
Sbjct: 765 KKQGAVSINGQNGASEGSPQKFEEDRERKMADMVCSLENKDACMSC 810


>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|12644286|sp|P48591|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster]
 gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster]
 gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]
          Length = 812

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/826 (35%), Positives = 442/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +KA     + LY        +
Sbjct: 71  AAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   LHD++G EFE  YE YE++         R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRAN-----RTVKAQSLWFAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ ++  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 917 --------KGVDGKLNAVPVT-DPNSSTHSLGIPSSCTSDTECEVC 953
                    G +G     P   + +       +  S  +   C  C
Sbjct: 765 KKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 867

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/785 (35%), Positives = 427/785 (54%), Gaps = 35/785 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVFKRDGHKEPVRFDKITARVSRLCYGLDPKHVDAVAITQRVISGVYHGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++  T  Y +  K  +  +     ++     E+
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT-TKQYSQVTKELYEYINPKNGKHSPLVSED 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H          L + + Y+RDF + Y G + L   Y L ING+  E PQ   M
Sbjct: 120 TYNIVQKHA-------DELNSAIVYDRDFQYNYFGFKTLERSYLLRINGNVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +     R +E YN +S  +F  ++PTLFN+GT HPQ+SSCFL  +  D + 
Sbjct: 173 RVAIGIHGDDI---ARVIETYNFMSQKYFTHASPTLFNAGTPHPQMSSCFLVAMRDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+  F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG EFE  YE YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLADVYGDEFEELYERYEKEGRGR-----QTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616
           + +KD CN ++ Q+++GV+ SSNLC EI   SS EETAVCNL SI L A    +     +
Sbjct: 405 MLYKDACNKKTNQKNLGVIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ +ID N + + +A++SN  +R I +G+ G   A   L IP+ S
Sbjct: 465 NFEKLHEITKVVTRNLNRIIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA ++  +  E I   A+ AS ELA E GAY +F+GS   QG+   D            
Sbjct: 525 PEAKQLNIQIFETIYHAALEASNELAVEEGAYETFQGSPASQGILQYDLWDKKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    W+ LK ++ + G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----SELWEWESLKAKIVSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LWD+ M + +   +GSI N+  IP+ LK ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN++L  P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRSAYIDQSQSLNIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVD 920
           +  V 
Sbjct: 755 VDKVA 759


>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group]
          Length = 814

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/841 (34%), Positives = 451/841 (53%), Gaps = 61/841 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+   + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YER+         + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPGLADCWGDEFEKLYTKYEREGK-----AKKIVPAQTLWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG
Sbjct: 462 IESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + + DGS+  +  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEV 952
           KT  YYLR+R+A    K T+     K N         + +       +  S  +  EC  
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLA 811

Query: 953 C 953
           C
Sbjct: 812 C 812


>gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/837 (35%), Positives = 452/837 (54%), Gaps = 59/837 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   +++   GL      + +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRNGRQETVHFDKITARLKKLSYGLSSDHCDAVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHKNT--------KKSFSETIKIMYYHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGQVLERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    AV+ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G++FE  Y  YER+         + + A +LW ++L    ETG
Sbjct: 347 QWSLFCPSEAPGLTDCWGEKFEELYLQYEREGK-----AMKVVQAQSLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ FKD CN +S QQ++G + SSNLCTEI   SS  ETAVCNL SI L  +       
Sbjct: 402 TPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVP 461

Query: 615 -----------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+DKLA         L+ VID+N + +E AK+SN  HR IG
Sbjct: 462 MESHPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL + + SPEA ++  E  E I +HA+  S  LA + G Y ++ GS   
Sbjct: 522 IGVQGLADTFILLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPIS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            ++R  WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVAP----------SNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P DLK I+ T +EI    L++ A+ R  +IDQ+QSLN+++D+P+  KL  +   AW  GL
Sbjct: 692 PADLKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLQFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L      + + +T    +  S T+  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTSA--LREKSNVEDDDNTKMAQMVCSLTNRDECLAC 806


>gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
 gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
          Length = 826

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/853 (34%), Positives = 458/853 (53%), Gaps = 73/853 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C GL    +    V  +    +YDG++  +L+   
Sbjct: 1   MLVVKRDGRRETVKFDKITARIEKLCYGLDLNYIQPIDVARKVINGIYDGVTTQELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+Y+K++AR  +  L +           K+  + M+ LY     +    
Sbjct: 61  AETAASMTVKHPDYSKLSARIAISNLHK--------TTSKSFSNTMKRLYTYVDAK---T 109

Query: 263 GVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A LL              L + + Y+RDF +++ G + L   Y + ++G  +E PQ 
Sbjct: 110 GQNAPLLSTETYGIIKKHAAQLDSAIIYDRDFGYDFFGFKTLERSYLMKVDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A++ YNL+S   F  +TPTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAIGIHGEDIE---SAIKTYNLMSEKWFTHATPTLFNAGTPKPQLSSCFLLTIQED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GT G S G++P L+  + TA  V
Sbjct: 227 SIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTGGVSNGIVPMLRNFDMTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+ +FLDL+KN G +  R  D+  A W+ DLFMKRV  NA
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E S L + YG +FE  YE YER+         + + A  LW ++L    ETG
Sbjct: 347 EWTLFDPNEASGLDEAYGDDFEKLYEKYEREGKGR-----KTVKAQELWFEILESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      ++  
Sbjct: 402 TPYMLYKDAANKKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASIALPMFVQEDENG 461

Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+DKL     TA   L+ VID+N + +E+A+ SN  HR IGLG+ G   A  LL  
Sbjct: 462 QKFFDHDKLYDITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGVQGLADAFMLLRY 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S E+ ++  E  E I F A++AS +LA + G Y ++KGS   +G+F  D        
Sbjct: 522 PFDSEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGIFQFDMWN----- 576

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +  T R  W  LK+ VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 577 -----VEPTDRWDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 631

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L +R +W++ M + L   +GS+ +I  IP D+K+++ T +EI 
Sbjct: 632 RTLSGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQDIKELYKTVWEIS 691

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QS+NL++ +P+  K+  ++  AW  GLKT  YYLRS++ATS 
Sbjct: 692 QKAIIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTGMYYLRSKAATSA 751

Query: 912 EKSTLK-------------------------------GVDGKLNAVPVTDPNSSTHSLGI 940
            + T+                                G  G+       D  ++  +  +
Sbjct: 752 IQFTVDKSQLNEPQPEQKPQDITQSTDTKVNRPQNSVGTQGQGPQANAEDDLAALKAAQV 811

Query: 941 PSSCTSDTECEVC 953
             S  +  +CE+C
Sbjct: 812 ACSLDNPDDCEMC 824


>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group]
          Length = 814

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/841 (34%), Positives = 451/841 (53%), Gaps = 61/841 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+   + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YER+         + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPGLADCWGDEFEKLYTKYEREGK-----AKKIVPAQTLWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG
Sbjct: 462 IESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + Y DGS+  +  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEV 952
           KT  YYLR+R+A    K T+     K N         + +       +  S  +  EC  
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLA 811

Query: 953 C 953
           C
Sbjct: 812 C 812


>gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
 gi|150858403|gb|EDN33595.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
          Length = 909

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/783 (35%), Positives = 433/783 (55%), Gaps = 39/783 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    + +  +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKERVQFDKITARVSRLCYGLDPDHIDAAAITQKVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K   H ++ LY     R    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPRN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +   +  +     L + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GTASPMISKQTYECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQ 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNL+S+ +F  ++PTLF++GT   QLSSCFL  +  D
Sbjct: 170 MIMRVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  GA+I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIDGIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EFE  YE+YE+          + I A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGDEFEALYESYEKAGKGR-----KTIKAQKLWYSILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E A CNL SI L          
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGT 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL   ++  VR L+ +IDIN + + +A+KSN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFQKLHEVVQVVVRNLNKIIDINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E I   A+++SVE+A+E G Y +++GS   +G    D  G+       
Sbjct: 522 SPEAKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WD LK+ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWDSLKQSIKQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QS+N+++ +P+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLK 917
           T+ 
Sbjct: 752 TVD 754


>gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/787 (35%), Positives = 432/787 (54%), Gaps = 41/787 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K      + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT--------TKQFSQVSKELYDYINPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            + + ++ +   D        L + + ++RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 DLHSPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + EK    +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVAVGIHGDDIEK---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L ++YG EFE  YE YER+           I A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAPGLPEVYGDEFEALYEKYEREGRGRS-----TIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L +   ++   
Sbjct: 402 TPFMLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNS 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++DKL    +T    L+ +ID N + + +A++SN  +R I LG+ G   A   L +P
Sbjct: 462 TWYNFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA E+  +  E I   A+ AS+ELAQ+ G Y S++GS   QG+   D         
Sbjct: 522 FDSQEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------TELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI  
Sbjct: 632 VLAGEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLKGV 919
           + T+   
Sbjct: 752 QFTVDSS 758


>gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa]
 gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa]
          Length = 812

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/839 (34%), Positives = 448/839 (53%), Gaps = 59/839 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGKQEAVHFDKITARLKKLSYGLSTDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +           K+    ++ +Y  +  +    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------HKSFSETIKIMYNHFNEK---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SALKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +GKEFE  Y  YER          + + A  LW ++L    ETG
Sbjct: 347 QWSLFCPSEAPGLADCWGKEFEELYTRYERDGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVP 461

Query: 614 ----------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD++KLA         L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 IESHPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNKIIDVNYYPVETARRSNFRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL + + SPEA ++  +  E I +HA+ AS E+A   G Y ++ GS   
Sbjct: 522 IGVQGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            +S   WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVTP----------SSLWNWDALREMISKNGVRNSLLLAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
            DDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 SDDLKCIYKTVWEIKQKTLVDMAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRS++A    K T+       K   +        T    +  S T+  EC  C
Sbjct: 752 KTGMYYLRSQAAADAIKFTVDTSVFKEKKPELDDDAAADDTKIAQMVCSLTNREECMAC 810


>gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 865

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/798 (34%), Positives = 435/798 (54%), Gaps = 35/798 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKEPVRFDKITARVQRLCYGLDPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++  T  Y K  +A +  +      +     +E
Sbjct: 61  AEIAATMTTVHPDYAVLAARIAVSNLHKQT-TKQYSKVSQALYEYVNPKTGLHSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + HE         L + + Y+RDF + Y G + +   Y L ING   E PQ   M
Sbjct: 120 TYDIIMEHE-------DELNSAIVYDRDFNYNYFGFKTMERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  K+     R +E YNL+S  +F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAIGIHGKDIP---RVIETYNLMSQRYFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE++         + I A  LW  +L+   ETG P+
Sbjct: 350 LFSPNEAPGLSDVYGDEFEELYTRYEKENRGR-----QTIKAQKLWYAILSAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQF 616
           + +KD CN ++ Q+++GV+ SSNLC EI   S+ +E AVCNL SI L +       N  +
Sbjct: 405 MLYKDACNTKTNQKNLGVIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFEKLHEVTKVVTRNLNRVIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ +S+ELA E G Y S+ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVESSIELAAEEGVYESYPGSPASQGLLQFDLWNRKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S++  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNS 933
           +  +  +     V + + 
Sbjct: 755 IDKLVAESAGQTVANLDK 772


>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa
           Japonica Group]
          Length = 814

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/841 (34%), Positives = 451/841 (53%), Gaps = 61/841 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+   + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAIKTYHLMSQRWFTHASPTLFNAGTTRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YER+         + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPGLADCWGDEFEKLYTKYEREGK-----AKKIVPAQTLWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG
Sbjct: 462 IESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + Y DGS+  +  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEV 952
           KT  YYLR+R+A    K T+     K N         + +       +  S  +  EC  
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLA 811

Query: 953 C 953
           C
Sbjct: 812 C 812


>gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
 gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
          Length = 799

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/825 (35%), Positives = 451/825 (54%), Gaps = 44/825 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C  L    +    V  +    +YDG++ S+L+   
Sbjct: 1   MLVIKRDGRRESVRFDKITARIENLCYELDPKFIQPIEVAKKVIDGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                +L  K P+YA + AR  +  L +           ++  + M+ LY     +    
Sbjct: 61  AEVCASLTVKHPDYAILAARIAISNLHKTT--------SQSFSNTMKRLYTYINPK---T 109

Query: 263 GVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+   +      +   L   + Y+RDF ++Y G + L   Y + ++G  +E PQ 
Sbjct: 110 GGNASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ +    AVE Y+LLS   F  +TPTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIHKEDIDA---AVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+  + TA  V
Sbjct: 227 SIDGIYDTLKQCAKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDMTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH DV++FLDL++N G +  R  D+  A WI DLFMKRV QN 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D YG+EFE  YE YE++    E      + A  LW ++L    ETG
Sbjct: 347 TWSLFCPNEAPGLSDCYGEEFERLYEKYEKEGRARE-----TVKAQELWFEILESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL S+ L          
Sbjct: 402 TPYMLYKDAANKKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVRTGPDG 461

Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+ KL    + A R L+ VID+N + +++A++SN  HR IGLG+ G   A  +L +
Sbjct: 462 KLFFDHQKLYEITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAFIMLRM 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA  + ++  E I + A+  S+ELA+  G Y +++GS   +G+   D  G+  + 
Sbjct: 522 PFESAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWGVTPK- 580

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W ELK++VK +G+RNS  +A  PTA+ + I G ++  +P   N+Y +
Sbjct: 581 --------SERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+ +L +  LWD+ M + L   +GS+ ++  +P ++K ++ T +EI 
Sbjct: 633 RTLSGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVWEIS 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QS+N++L +P+  KL  ++  AW  GLKT  YYLRS++A S 
Sbjct: 693 QKVIIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASA 752

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSL---GIPSSCTSDTECEVC 953
            K TL   + +              SL    I  S      CE+C
Sbjct: 753 IKFTLDKSNLEPKVDKAMQEEIDAKSLKQDAISCSLDDPDGCEMC 797


>gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis]
          Length = 810

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/838 (34%), Positives = 457/838 (54%), Gaps = 59/838 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G L   +  ++   + +   GL        +V  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRSGVLAPVSFDKITARISKLSYGLNPDFCDPVLVAQKVTTGVYKGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L    P+YA + AR  +  L +  L +  +  +    H              + 
Sbjct: 61  AETAASLTATHPDYALLAARIAVSNLHKNTLKSFSETVKLMFSHVNP-----------KN 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G KA L+ E + +        L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ 
Sbjct: 110 GEKAPLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYFGFKTLERSYMLRVNGRVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRVA+G+ L++ +    AVE Y+LLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHLEDVDA---AVETYHLLSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKND 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECASISKSAGGIGLSMHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   Y E WH D+ ++LDLRKN G +  R  D+  A WIPDLFM RV  N 
Sbjct: 287 DQGGGKRKGAFAMYCEPWHADIFDWLDLRKNHGKEEARARDLFYALWIPDLFMHRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EFE  Y  YER+         + I A  LW  +L    ETG
Sbjct: 347 EWSLFCPNESPGLADCWGEEFEALYSRYEREGRAR-----KVIKAQQLWFAILEAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
           +P++ +KD  N +S QQ++G + SSNLCTEI   SS EETAVCNL S+ L       +  
Sbjct: 402 NPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASVALPRFVREKEPS 461

Query: 616 -----------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
                            FD+DKLA     A R L+ +ID+N + +E A++SN  HR IGL
Sbjct: 462 GREGKKLVGSLDAEGRYFDFDKLAEVTAVATRNLNKIIDVNYYPVETARRSNMRHRPIGL 521

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+ G      LL +P+ SPEA E+  +  E I F A+  S++L++  G YS+++GS   +
Sbjct: 522 GVQGLADTFLLLGLPFDSPEAAELNRQIFETIYFAALRTSMQLSKAEGPYSTYEGSPVSK 581

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D  G+            + R  WD L++ +   G+RNS  +A  PTA+ + I G 
Sbjct: 582 GILQPDMWGVKP----------SDRWDWDGLRRDIAQNGVRNSLLVAPMPTASTSQILGN 631

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++  +P   N+YV+  +SG+F VVN  L+++L +  LWD  + +++    GS+ +++ IP
Sbjct: 632 NECFEPYTSNIYVRRVLSGEFVVVNQHLLHDLTRLGLWDTDVKNEIVAASGSVADLD-IP 690

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           ++LK+++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLK
Sbjct: 691 NNLKELYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKKGLK 750

Query: 899 T-TYYLRSRSATSVEKSTL--KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T  YYLRSR+A    K T+  + +  + +     +  +++    +  S  +   C +C
Sbjct: 751 TGMYYLRSRAAADAIKFTVDQQALQRRKSERLAKENKATSDMAAMVCSLENKDACVMC 808


>gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/785 (35%), Positives = 432/785 (55%), Gaps = 41/785 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K      + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT--------TKQFSQVSKELYDYINPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            + + ++ +   D        L + + ++RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 DLHSPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + EK    +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVAVGIHGDDIEK---VIESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L ++YG EFE  YE YER+           I A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAPGLPEVYGDEFEALYEKYEREGRGRS-----TIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L +   ++   
Sbjct: 402 TPFMLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNS 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++DKL    +T    L+ +ID N + + +A++SN  +R I LG+ G   A   L +P
Sbjct: 462 TWYNFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA E+  +  E I   A+ AS+ELAQ+ G Y S++GS   QG+   D         
Sbjct: 522 FDSQEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------TELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI  
Sbjct: 632 VLAGEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLK 917
           + T+ 
Sbjct: 752 QFTVD 756


>gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           gattii WM276]
 gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus gattii WM276]
          Length = 863

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/813 (35%), Positives = 428/813 (52%), Gaps = 41/813 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           I   DG        ++   + +   GL    V    +  +  + ++ G++  +L+     
Sbjct: 5   IYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNLAAE 64

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L  K P+YA + AR  +  L +E         +K     +  L+     +    G 
Sbjct: 65  TAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPK---TGK 113

Query: 265 KARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + ++ + +      +   L + + Y+RDFA+ Y G + L   Y L ING  +E PQ   
Sbjct: 114 HSPMIDDEVYKVVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+     +K    +E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D +
Sbjct: 174 MRVAVGIHGANIDK---VIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A ++K +GG+G     +R  G++I GTNG S G+IP L+  + TA  V+Q
Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV +F+DLRKN G +  R  D+  A WIPDLFMKRV  +  W
Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P E   L D+YG+EFE  YE+YERQ         + I A  LW  +L    ETG P
Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYERQGKGR-----KTIKAQKLWFAILEAQTETGVP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617
           +I +KD  N +S Q+H+G + SSNLCTEI   SS +E AVCNL S+ L A        +D
Sbjct: 406 YICYKDAANSKSNQKHLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + LD VI  N + + +A+ SN  HR +GLG+ G   A   L +P+ S 
Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSL 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+  +  E I   A+ AS ELA+E+G Y S++GS   +G+   D  G +        
Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEQGTYESYEGSPLSKGILQYDMWGRVP------- 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P    LY +  +SG
Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DF VV  +L+ +L   DLWD+ M   +    GSI +I  IPDDLKKI+ T +EI    +I
Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L  PS  +L  ++   W  GLKT  YYLR+R + +  + T+
Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTI 755

Query: 917 KGVDGK--LNAVPVTDPNSSTHSLGIPSSCTSD 947
                K   N      P+ +          T+D
Sbjct: 756 DASTLKTAKNLSSSAKPSPTPSPAPGAGRATAD 788


>gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
           lytica DSM 7489]
 gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           lytica DSM 7489]
          Length = 825

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/811 (36%), Positives = 452/811 (55%), Gaps = 34/811 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRKELIMFDKITARVRKLCYGLNALVDPLKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K+    M+ LY     R    G
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSEVMKDLYEYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + +      +   L + + Y RDF ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKAPLLSDEVFKVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSIGIHLNDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S GV+P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ EFLDL+KN G +  R  D+  A WIPDLFM+RV  NA 
Sbjct: 287 QGGGKRKGSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANAD 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  DL+  + KEFE AY  +E +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPDLYKKHDKEFEEAYLAFEAEGKGR-----KTIKARDLWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L     N +FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   R L+ VID N + + +A+ SN  HR IGLG+ G   A  ++ +P+ S E
Sbjct: 462 KELFRVTKRVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + + A++AS+E+A+E G YSS++GS   +G F  +  G+  +       
Sbjct: 522 AKKLNQEIFETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGIKDD------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W++L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L Q  LW+E++  +L   +GSI +I+ IP+D+K+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T+ 
Sbjct: 695 MSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
               K   V V  P     ++      T+  
Sbjct: 755 NSKKKEKPV-VEAPEPKLAAVSAAPKATATE 784


>gi|72084113|ref|XP_780425.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115956273|ref|XP_001177269.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           [Strongylocentrotus purpuratus]
          Length = 797

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/819 (35%), Positives = 442/819 (53%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   ++  C  L    +   ++  +    +Y G++  +L+T    
Sbjct: 6   VQKRDGRKEIVMFDKITSRIQRLCYNLNSDFIDPAVITMKVISGVYPGVTTVELDTLAAE 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ T+  K P+YA + AR  +  L +E         +K     M+ L+     R    G+
Sbjct: 66  TAATMTTKHPDYAVLAARIAVSNLHKET--------KKLFSAVMKDLFEYTNPRN---GL 114

Query: 265 KARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + L+ E  M   + +   L + + Y+RDF + Y G + L   Y L ING   E PQ   
Sbjct: 115 HSPLISEETMMIINDNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHML 174

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRV++G+  K+ +    A++ YNLLS   F  ++PTLFN+GT  PQLSSCFL T+  D +
Sbjct: 175 MRVSVGIHGKDIDA---AIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSI 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+Q
Sbjct: 232 DGIYETLKNCALISKTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQ 291

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ +FLD +KN G + +R  D+    WIPDLFMKRV  +  W
Sbjct: 292 GGNKRPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDW 351

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P E   LH+++G+EFE  YE YE+          + I A ALW  ++    ETG P
Sbjct: 352 TLMCPHESPGLHEVWGEEFETLYEGYEKAGRGR-----KTIKAQALWYAIIESQTETGTP 406

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           ++ +KD CN +S QQ++G +  SNLCTEI   SS++E AVCNL SI L     +  FD+ 
Sbjct: 407 YMVYKDHCNKKSNQQNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFK 466

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL          L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 467 KLEEVTMVITENLNKIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEA 526

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS ++A + G Y ++KGS   +G+   D  G+           
Sbjct: 527 KKLNIQIFETIYYAALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTP--------- 577

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK  +   G+RNS  +A  PTA+ A I G +++I+P   N+Y +  +SG+F
Sbjct: 578 -TDLHDWASLKADIAKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEF 636

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L    LW + M ++L  ++GSI NI  IPDD+K ++ T +EI    +I+ 
Sbjct: 637 QVVNHHLLRDLTDMGLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQM 696

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A  R  +IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+R A    K TL  
Sbjct: 697 AVDRGAYIDQSQSLNIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTLDK 756

Query: 919 VDGKLNA----VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +  K  +        +   + +   +  S  +   C  C
Sbjct: 757 LSLKEKSGAKLTEAEEKERAKNEAAMMCSLENKDACVSC 795


>gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
 gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
          Length = 903

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/808 (34%), Positives = 433/808 (53%), Gaps = 39/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+              + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSSVVSDLYHYVNP-----------KN 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++     +F +     L + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 NRPSPMIAPETYEFVMKHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     +  +R +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D
Sbjct: 170 MIMRVSVGIWG---DNVERVIETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+ P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGITPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D YG EFE  YE YE+          + I A  LW  +L    ETG
Sbjct: 347 DWTLMCPNECPGLADCYGDEFEALYEKYEKAGKGR-----KTIKAQKLWYAVLEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A+    N  
Sbjct: 402 NPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGV 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID+N + + +A+ SN  HR IGLG+ G   A   L +P+ 
Sbjct: 462 YDFKKLHQVTQVVVRNLNRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA E+  +  E I   A++ S +LAQE G YS+++GS   QG+   D   +       
Sbjct: 522 SPEAKELNKQIFETIYHAALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWNVKP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W +LK ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWADLKSQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW ++M + +   +GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + 
Sbjct: 692 VVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T+     K+    V    S      +PS
Sbjct: 752 TVDKEALKVADTNVGKERSLKKRSPMPS 779


>gi|91215506|ref|ZP_01252477.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186458|gb|EAS72830.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
          Length = 815

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/839 (34%), Positives = 455/839 (54%), Gaps = 56/839 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  +G        ++   + + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MHVIKRNGQKEPVMFDKITARIRKLCYGLNPLVEPAKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             S T+    P+YA++ AR  +  L +          +K+    M  LY     R     
Sbjct: 61  EISATMTVSHPDYAQLAARISVSNLHKNT--------KKSFSEVMADLYEYVNPRN---N 109

Query: 264 VKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            K+ L+ + +    +     L + + Y RDF ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKSPLIADDVYKVIEEHKDELDSRIIYSRDFNYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+  ++ E     +E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSLGIHGEDLE---SVLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTARISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+  FLDL+KN G +  R  D+  A WIPDLFMKRV +N+ 
Sbjct: 287 QGGGKRKGSFAMYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENST 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  +L++++ +EF+  Y  YE++         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPNLYNVHSEEFDELYLKYEQENKGR-----KTIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +F +
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +  ++ L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S E
Sbjct: 462 KELYKITKQIIKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A+ +S+ELA+  G YSSF+GS   +G F  +  GL          
Sbjct: 522 AKKLNQEIFETLYFAAVESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDN------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + + R  W +L+++V   G+RNS  MA  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 DTSGRWNWSKLREKVMKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LWD+ +   +   +GS+  I+ IPDD+K+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLKDLVSLGLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TLK
Sbjct: 695 MSRQRGYFIDQSQSLNLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLK 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSC-----------------------TSDTECEVC 953
               +  A      N++       S                         + D +CE+C
Sbjct: 755 SEKKEKEAPSQVVQNAAKTYEEAQSQSIKVSDDSSLSPEELKALIKQSKESEDDDCEMC 813



 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 57/176 (32%), Gaps = 32/176 (18%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + VIKRNG      FD  KI+  I K    +        + ++ +I+ L +   T  L +
Sbjct: 1   MHVIKRNGQKEPVMFD--KITARIRKLCYGLNPLVEPAKVAMR-VIEGLYDGVTTSELDN 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL- 145
             + +               M   H         Y +  + +  +  H  +    +  + 
Sbjct: 58  LAAEISAT------------MTVSHPD-------YAQLAARISVSNLHKNTKKSFSEVMA 98

Query: 146 ----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
                +   +       +  +  ++E       ++ S+I+ S  +   Y G    +
Sbjct: 99  DLYEYVNPRNNKKSPLIADDVYKVIE---EHKDELDSRIIYSRDFNYDYFGFKTLE 151


>gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Pichia angusta
           DL-1]
          Length = 862

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/809 (33%), Positives = 429/809 (53%), Gaps = 41/809 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V   C GL  + V    +       +Y G++  +L+   
Sbjct: 1   MYVLKRDGRKEPVRFDKITARVSRLCYGLDPEHVEPVAITQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +   +  H+              + 
Sbjct: 61  AETAAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVDQLYHYINP-----------KN 109

Query: 263 GVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +            L + + Y+RDF++ Y G + L   Y L I+G   E PQ 
Sbjct: 110 GKPSPMISDETYRIVQEHADELNSAIVYDRDFSYNYFGFKTLERSYLLKIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   +       +E YNL+S   F  ++PTLFN+GT HPQ+SSCFL  +  D
Sbjct: 170 MVMRVAIGIHGDDIP---SVIETYNLMSQKFFTHASPTLFNAGTPHPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKAAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   Y+E WH D+ +F+D+RKN G +  R  D+  A WIPDLFM+RV QNA
Sbjct: 287 DQGGNKRPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP E   L D+YG EF+  Y  YE++         + + A  LW  +L    ETG
Sbjct: 347 EWTLFSPSEAPGLADVYGDEFKELYTRYEKEGRGR-----QTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L A   ++   
Sbjct: 402 TPFMLYKDACNSKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNT 461

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             ++++KL    +   + L+ +ID N + + +A++SN  +R I +G+ G       L +P
Sbjct: 462 SWYNFEKLHQITKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA E+  +  E I   A+ AS ELA   G Y +F+GS   QG+   D  G      
Sbjct: 522 FDSPEARELNIQIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWGKKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK R++  G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------TDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    LW+++M + +   +GS+ N+  +P +LK ++ T +EI  
Sbjct: 632 VLAGEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QS+N++L  P+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KSIIDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           + T+        +  V   N       +P
Sbjct: 752 QFTVDQKSAATASSTVASLNKLKLKKYVP 780


>gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis]
 gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis]
          Length = 797

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/824 (35%), Positives = 451/824 (54%), Gaps = 44/824 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y+G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKIFSDVMEDLYNYVNPLN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +  +D  L     L + + Y+RDF++ + G + L   Y L I+G   E PQ 
Sbjct: 110 GKHSPMVSKETLDLVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKTDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNL 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L +++G +FE  YE YER+         + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPHECPGLEEVWGDKFEELYERYEREGRAR-----KVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTPERSF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLADVTKVIVRNLNKIIEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ +S ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 EEAQLLNKQIFETIYYAALESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TGLWDWAALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLMKDLTERGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 ITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 LKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L     K   +               +   +  S  +  EC +C
Sbjct: 752 LNKEKLKEKELISKETMEKDKEEKEKNKAAMVCSLENRDECLMC 795


>gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 806

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/792 (55%), Positives = 557/792 (70%), Gaps = 7/792 (0%)

Query: 163 EMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           ++IVE   +  Q   +  +        Y  ++ ++   A   ++R+ IE+EP+Y+ V A 
Sbjct: 20  QLIVEACAAYPQTTDANTLWQAASLGFYPNMAVAEQLQACCLTARSWIEQEPDYSFVAAA 79

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            L  +L  EVL      P           Y   F  YI+ G+   LL   +  FDL  LA
Sbjct: 80  LLASQLHFEVLGEYLATPAVV------PRYASAFVDYIQAGIAQGLLDPKLASFDLARLA 133

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             +  ERD    Y GLQ LYDRYF+   G R E+PQ F+MRVAMGLAL E ++E + + F
Sbjct: 134 AAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADREAQTLRF 193

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y +LS FHF  +TPTLFN+ T HPQLSSC+L+TV DDL  IFGA+ +NAML+K++GGLGN
Sbjct: 194 YEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSKWAGGLGN 253

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           DWTPVR LGA IHGTNG SQGVIPFLK+ NDTA+AVNQGGKRKGAVCAYLE WH D+E+F
Sbjct: 254 DWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAWHADLEDF 313

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LDLRK TGD+RRRTHDM+TA W+PDL M+RV  N  W+LFSPDEV DLHDLYG++F + Y
Sbjct: 314 LDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYGQDFAVRY 373

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE  A +G ++  R++ AVALWRK+LT LFETGHPWIT+KD  N+RSPQ HVGV+HSS
Sbjct: 374 AEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDHVGVIHSS 433

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEI LN+S++E AVCNLGSINL AH  +   D +KL +T+ TAVR+LDNVIDIN + 
Sbjct: 434 NLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNVIDINFYP 493

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +A ++N  HR IGLGLMGFQ AL+ L I YAS  AVE +D SME I++ A++AS+ELA
Sbjct: 494 RPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAVAASIELA 553

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +ERGAY SF+GS WD+G+ PIDS+ +LAE RD +  ++ +S   W  L++ +   G+RNS
Sbjct: 554 RERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSKPELDHSSHYDWQPLREALAQYGIRNS 613

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           N +AIAPTATIANI G SQSI+P+Y++LYVKSN+SGDFT VN  LV+ LK R LWD  ++
Sbjct: 614 NLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKARGLWDVDLL 673

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           ++LKY+DG+I  IERIP +LK    TAFEI P WLI  A+RRQKWID  QSLNLY+ E S
Sbjct: 674 AELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSLNLYVAETS 733

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           GK+L+ IY  AW MGLKTTYYLR+ +AT +EKSTL      +    + + + S   L   
Sbjct: 734 GKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLDINRFGVQPRWMRNRSESASVLSDN 793

Query: 942 SSCTSDTECEVC 953
                D  CE C
Sbjct: 794 VCPIDDPSCEAC 805


>gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
 gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
          Length = 814

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/838 (35%), Positives = 451/838 (53%), Gaps = 55/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   + +   GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MFVLKRDGRKEPIMFDKITARIRKLNYGLNPLVDPVRVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K+    M  LY     R    G
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMTDLYKYVNPR---TG 109

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + + D    +   L + + Y RDF +++ G + L   Y L +NG  +E PQ  
Sbjct: 110 KKAPLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFKTLERSYLLKLNGVIVERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L++ E    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSIGIHLEDIEA---ALETYELMSKRYFTHATPTLFNSGTPKPQMSSCFLLTMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FL+L+KN G +  R  D+  A W PDLFMKRV +NA 
Sbjct: 287 QGGGKRKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDLFYAMWTPDLFMKRVEENAD 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  DL++++G EF+  Y  YE +         R I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPDLYNVHGDEFDAMYLKYESEGRGR-----RTIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L     +  FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKDGAFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             L        + L+ VID N + + +A+ SN  HR +GLG+ G   A  +L +P+ S E
Sbjct: 462 QALYDVTVRVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLGVQGLADAFIMLRLPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS E A+  G Y ++KGS    G F  +  G+  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIANGEFQHNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L  R LW+E M  +L  ++GS+ +IE IP+DLK+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPEDLKELYKTVWEMSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++   W  GLKT  YYLR++SA    K TL 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKTGMYYLRTKSAVDAIKFTLD 754

Query: 918 --------GVDGKLNAVPVTDPNSSTHSLGIPSSCT--------------SDTECEVC 953
                    V+  + AV       +  +       +               D +C +C
Sbjct: 755 TKSKAKVPEVEAAVGAVSTATAGKAAQAPVPVEPLSPQELKQMLAQAKEGEDDDCLMC 812


>gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767]
 gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii]
          Length = 867

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/817 (33%), Positives = 433/817 (52%), Gaps = 41/817 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTTHVEPVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K      + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT--------TKQFSQVSKELYEYVNPK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            + + ++ +   D    +   L + + ++RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 DLHSPMISKDTYDIIQANANELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YN++S  +F   +PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVAVGIHGNDIE---RVIESYNMMSLRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L D+YG EFE  Y  YE++     +     + A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAKGLSDVYGDEFEELYTKYEKENRGRSV-----VKAQKLWYAILDAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD CN ++ Q+++G++ SSNLC EI   S+ +E AVCNL SI L A    N   
Sbjct: 402 TPFMLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTT 461

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +D++KL    +   R L+ +ID N + + +A+ SN  +R I LG+ G   A   L +P
Sbjct: 462 SWYDFEKLHEVTKVVTRNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA E+  +  E I   A+ AS+ELA+  G Y +++GS   +G+   D         
Sbjct: 522 FDSQEAKELNTQIFETIYHGAVEASIELAEIEGPYQTYEGSPASKGILQFDLWERKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------TELWDWDTLKQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    +W++ M +++  ++GSI  +  IPD+LK ++ T +EI  
Sbjct: 632 VLAGEFQIVNPYLLRDLVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           + T+        +  +           I  S +S  +
Sbjct: 752 QFTVDQNSVNNASKTIASLEKLNQRKYIAKSVSSTND 788


>gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1]
          Length = 913

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/825 (34%), Positives = 433/825 (52%), Gaps = 51/825 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA- 201
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTIQLDDLV 60

Query: 202 -----------------LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
                               ++  +    P+YA + AR  +  L ++             
Sbjct: 61  SGVCTMTVVTSANPILQAAETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSAVVSDLY 120

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           H               +E  +  + H+         L + + Y+RDF + Y G + L   
Sbjct: 121 HWV-NPKNDRASPMISKETYECVMRHK-------EELDSAIVYDRDFNYNYFGFRTLSRS 172

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L I+G   E PQ   MRVA+G+   + E   R +E YNL+SS  F  ++PTLFN+GT 
Sbjct: 173 YLLQIDGKIAERPQHMIMRVAVGIWGDDIE---RVLETYNLMSSKFFTHASPTLFNAGTP 229

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL  +  D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G
Sbjct: 230 QPQLSSCFLVDMKEDSIDGIYDTLKTCAMISKMAGGIGLNAHRIRATGSYIAGTNGTSNG 289

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A
Sbjct: 290 IVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLA 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV +N  WTL  P+E   L D YG EFE  YE YER+         + I A
Sbjct: 350 LWIPDLFMKRVERNGEWTLMCPNECPGLADCYGDEFEALYEKYEREGKGR-----KSIKA 404

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL
Sbjct: 405 QKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNL 464

Query: 603 GSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            S++L +   + +  +D+ KL    +  VR L+ +ID+N + +++A+ SN  HR IGLG+
Sbjct: 465 ASLSLPSFINYEDACYDFKKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A   L +P+ SPEA E+  +  E I   A++ SV+LA+E G YS+FKGS   +G+
Sbjct: 525 QGLADAFLALRMPFESPEARELNKQIFETIYHAALTTSVQLAKEEGPYSTFKGSPASEGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   +            +    W+ L++ VKT G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQFDMWNVKP----------SDLWDWEPLREDVKTHGIRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  ++G+F VVN +L+ +L    LW +AM + +   +GSI NI  IP +
Sbjct: 635 CFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPAE 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           +K ++ T +EI    +++ A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT 
Sbjct: 695 IKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            YYLR+++A +  + T+   + K+                   S 
Sbjct: 755 MYYLRTQAAAAPIQFTVDQENLKIADSNSASIKPLGKRAPPAGSS 799


>gi|103488896|gb|ABF71875.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 923

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/808 (34%), Positives = 437/808 (54%), Gaps = 39/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     R    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSLVISELYNYVNPR---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ + + +  +       + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MIMRVAVGIWGDDVE---RVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV E LDLRKN G +  R  D+  A WIPDLFMKRV QN 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFESLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG
Sbjct: 347 QWTLMCPHECPGLADVYGDEFEALYEKYEKEGKGR-----KTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVC L S+ L A   + N  
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCYLASLALSAFIDYENAS 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 YDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +       
Sbjct: 522 SDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + 
Sbjct: 692 IVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T+     +     V   +S       P+
Sbjct: 752 TVDQEALRATDDRVAPAHSGLKKRSPPA 779


>gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 790

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/818 (35%), Positives = 446/818 (54%), Gaps = 39/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C+GL    ++   +  +    +YD ++  +L+   
Sbjct: 1   MLVVKRDGRYESVKFDKITARIEKLCTGLNTDYINPVDIAMKVIAGIYDKVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++  K P+Y  + AR  +  L +           ++  + M+ LY     +    
Sbjct: 61  AEIAASMATKHPDYTVLAARIAVSNLHK--------VTSESFSNTMKWLYTYIDPK---T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+   +          L   + Y+RD+ ++Y G + L   Y L ING  +E PQ 
Sbjct: 110 GENASLIASDVYKVIREHAALLDKTIVYKRDYDYDYFGFKTLERSYLLKINGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A++ Y+LLS   F  +TPTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIHKEDIEA---AIQTYHLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+  + TA  V
Sbjct: 227 SIEGIYDTLKQCAQISQSAGGIGLSIHNIRATGSYIKGTNGISNGIVPMLRNFDMTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG +RKG+   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N 
Sbjct: 287 DQGGGRRKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWIPDLFMQRVENNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D YG+EFE  Y+ YER+         + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNESPGLADCYGEEFERLYKKYEREGKAR-----KSVKAQELWFAILEAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616
            P++ +KD  N +S QQ++G + SSNLCTEI   +S EE AVCNL SI L        +F
Sbjct: 402 MPFMLYKDSANRKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASIALPKFINQAGKF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL        + L+ +IDIN + + +A+ SN  HR IG+G+ G       L +P+ S
Sbjct: 462 DHQKLYEITYVITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGLADTFLRLRMPFDS 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I F A++AS +LA++ G Y +FKGS   +G+F  D  G+        
Sbjct: 522 PEARGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQFDMWGVEP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               + R  W+ L+K V+  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +S
Sbjct: 576 ---SSGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLS 632

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L    LWDE M ++L   +GS+  I+RIP  +K++H T +EI    +
Sbjct: 633 GEFIVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKELHRTVWEIPQKAI 692

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +I Q+QS+N++L + +  KL  ++  AW  GLKT  YYLR+R A    K T
Sbjct: 693 IDMAADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYYLRTRPAADAIKFT 752

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L+  +  LN +PV         + +        +C VC
Sbjct: 753 LQK-EQALNDIPVPQKKVE-QQVSMVCDAEDSEDCLVC 788


>gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans]
 gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans]
          Length = 879

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/813 (34%), Positives = 432/813 (53%), Gaps = 47/813 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGRREPVKFDKITARVSRLCYGLDPNHVDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +      H+              + 
Sbjct: 61  AETCAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVSDLFHYVNP-----------KN 109

Query: 263 GVKARLLHESMMDFDL-----VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           G+ + ++ + +  FD+       L + + Y+RDF + Y G + L   Y L ING   E P
Sbjct: 110 GIHSPMISQEV--FDIIQKHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRINGEVAERP 167

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+      K    +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + 
Sbjct: 168 QHLIMRVAVGIHGDNIPK---VIETYNLMSLKYFTHASPTLFNAGTPHPQMSSCFLVAMK 224

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA 
Sbjct: 225 DDSIEGIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTAR 284

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A W+PDLFMKRV +
Sbjct: 285 YVDQGGNKRPGAFALYLEPWHSDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQE 344

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLFSP E   L D+YG EFE  YE Y ++         + I A  LW  +L    E
Sbjct: 345 NGDWTLFSPSEAPGLSDVYGDEFEALYERYVQEGRGR-----KTIKAQKLWYAILEAQTE 399

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P++ +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S++L A    ++
Sbjct: 400 TGTPFMLYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSE 459

Query: 616 ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +++DKL    +     L+ VID N + +E A+ SN  HR + LG+ G   A  +
Sbjct: 460 DGQTQWYNFDKLHEIAKVVTHNLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMI 519

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L IP+ S EA E+  +  E I   A+  S ELA E G Y +F+GS   QG+   D     
Sbjct: 520 LRIPFDSQEAKELNIQIFETIYHAALERSNELAVEHGPYETFEGSPASQGILQFDMWDKK 579

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    W+ LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+
Sbjct: 580 P----------TDLWDWETLKAKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNM 629

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F +VN +L+ +L    +W++AM S +   +GSI N+  IP  LK ++ T +
Sbjct: 630 YSRRVLSGEFQIVNPYLLRDLVDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVW 689

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           E+    +IE A+ R  +IDQ+QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A
Sbjct: 690 ELSQKTIIEMAADRACYIDQSQSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAA 749

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           ++  + T+      +      D  +    L +P
Sbjct: 750 SAAIQFTIDKSVASMAGDKEADLQNLHRPLYVP 782


>gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina
           98AG31]
          Length = 871

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 432/780 (55%), Gaps = 37/780 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   + + C GL +V      +  +    +++G++  +L+     
Sbjct: 4   VYKRDGRRERVAFDKITARINKLCYGLDNVHVEPIEITKKVINGVFNGVTTVELDNLAAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  +  + P+YA + AR  +  L +E         +K     ++ LY     +    G 
Sbjct: 64  TAAYMTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYRYVNPKN---GR 112

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + ++ +   +    +   L + + Y+RDF + Y G + L   Y L I+    E PQ   
Sbjct: 113 PSPMISDETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIDNKVAERPQHML 172

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+   + +   RA+  YNL+S  +F  ++PTLFNSGT HPQLSSCFL ++  D +
Sbjct: 173 MRVAVGIHGTDVD---RAIRTYNLMSEKYFTHASPTLFNSGTPHPQLSSCFLVSMKSDSI 229

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+Q
Sbjct: 230 DGIYDTLKTCAMISKTAGGIGLNIHDIRATGSYIAGTNGYSNGIVPMLRVFNNTARYVDQ 289

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   Y+E WH DV ++LDLRKN G +  R  D+  A WIPDLFM+RV  N  W
Sbjct: 290 GGNKRPGAFAIYIEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDW 349

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P E   L D+YG+ FE  ++ YE++         + + A  LW  +L    ETG+P
Sbjct: 350 PLFCPAEAPGLSDVYGEAFEKLFDQYEKEGR-----AKKTVKAQKLWYAILEAQTETGNP 404

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           ++ +KD  N +S Q+++G + SSNLCTEI   S+ +E AVCNL SI L  +  +  +D+ 
Sbjct: 405 FMLYKDAANRKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYITDGVYDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +     L+ +ID+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA
Sbjct: 465 KLHEVTKEVTWNLNRIIDVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E +   A+ AS ELA   GAY +F GS    G    D  G+           
Sbjct: 525 KKLNAQIFETLYHAALEASNELAVAEGAYETFPGSPASLGELQYDMWGVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD+LK+R+K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F
Sbjct: 576 -SDLWKWDDLKERIKATGLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN +L+ EL +  LW++ M + +  H GSI NI  IP  +K ++ T +EI    +I+ 
Sbjct: 635 QIVNPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDL 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN++L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T+  
Sbjct: 695 AADRGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDK 754


>gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
 gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
          Length = 889

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/817 (33%), Positives = 436/817 (53%), Gaps = 41/817 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     ++ LY     +    
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSAVVEDLYTYVNPKN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G    ++ + +          L + + Y+RDF +++ G + L   Y L ING   E PQ 
Sbjct: 110 GKSQPMISDHVYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++  K   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EFE  YE+YE+Q    E      + A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGDEFEALYESYEKQNKGRE-----TVRAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L +       +
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 FDFQKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA ++  +  E I   A+++S ++A+E G Y +++GS   QG+   D   +       
Sbjct: 522 SEEAKKLNIQIFETIYHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTD--PNSSTHSLGIPSSCTSDTE 949
           T+     K+    +    P        +P +  S  E
Sbjct: 752 TVDQEQLKVADTNIAKALPKIRKQPGFVPEAVRSAPE 788


>gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola
           taffensis DSM 16823]
 gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola
           taffensis DSM 16823]
          Length = 789

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/817 (35%), Positives = 441/817 (53%), Gaps = 38/817 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG   +    ++   + + C GL   VS + V  +  + +YDG++ + L+    
Sbjct: 1   MYVLKRDGRKEAVKFDKITARIIKMCYGLDPLVSPEAVAMKVIEGIYDGVTTTVLDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +       P+YA + +R  +  L +E         +K+    M+ LY     +    G
Sbjct: 61  EVAAAKTIDHPDYALLASRIAVSNLHKET--------KKSFSEVMEDLYKYVDPK---TG 109

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +A L+ + + +    +   L + + Y+RDF ++Y G + L   Y L   G   E PQ  
Sbjct: 110 QRASLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAERPQQM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA+G+   +     +A++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVAVGIHKNDLP---QAIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IEGIYETLKSCAQISQSAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH DV +FLDL+KNTG +  R  D+  A WIPDLFMKRV +N  
Sbjct: 287 QGGGKRKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGD 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P E   L D +G EFE  Y  YE +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPHECPGLSDTFGAEFEALYTQYETEGKGR-----KTIKAQDLWFKVLESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
           P++ +KD  N +S QQ++GV+ SSNLCTEI   ++ +E AVCNL S+ L  +   + +FD
Sbjct: 402 PYMLYKDAANAKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTEDGKFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +DKL      A   L+ +ID N + +E+A+KSN  HR IGLG+ G      +L  P+ S 
Sbjct: 462 HDKLFEVTYQATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYPFESE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  E  E I + A++AS +LA   G Y ++ GS   +GVF  D  G+         
Sbjct: 522 EARALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              TSR  WD LK+ V   G+RNS  +A  PTA+ A I G ++  +P   N+Y +  +SG
Sbjct: 575 ---TSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN  L+ +L +  LW + M   L   +GS+ NI  IP  +K ++ TA+EI    +I
Sbjct: 632 EFIIVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQKAII 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           E A+ R  +I Q+QSLN++++  +  KL  ++   W  GLKT  YYLR+++AT   K T+
Sbjct: 692 EQAADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAIKFTV 751

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                      ++          I  S  +   CE+C
Sbjct: 752 DKA-VTEEPAAISAAELEEQQAAIACSLDNPDNCEMC 787


>gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 863

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/808 (35%), Positives = 424/808 (52%), Gaps = 39/808 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           I   DG        ++   + +   GL    V    +  +  + ++ G++  +L+     
Sbjct: 5   IYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNLAAE 64

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L  K P+YA + AR  +  L +E         +K     +  L+     +    G 
Sbjct: 65  TAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPK---TGK 113

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + ++ + +      +   L + + Y+RDFA+ Y G + L   Y L ING  +E PQ   
Sbjct: 114 HSPMIDDDVYKIVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+     +K    +E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D +
Sbjct: 174 MRVAVGIHGSNIDK---VIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A ++K +GG+G     +R  G++I GTNG S G+IP L+  + TA  V+Q
Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV +F+DLRKN G +  R  D+  A WIPDLFMKRV  +  W
Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P E   L D+YG+EFE  YE+YER+         + I A  LW  +L    ETG P
Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYERKGKGR-----KTIKAQKLWFAILEAQTETGVP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617
           +I +KD  N +S Q+ +G + SSNLCTEI   SS +E AVCNL S+ L A        +D
Sbjct: 406 YICYKDAANSKSNQKQLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + LD VI  N + + +A+ SN  HR +GLG+ G   A   L +P+ SP
Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSP 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+  +  E I   A+ AS ELA+E G Y S++GS   +G+   D  G +        
Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEFGTYESYEGSPISKGILQYDMWGRVP------- 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P    LY +  +SG
Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DF VV  +L+ +L   DLWD+ M   +    GSI +I  IPDDLKKI+ T +EI    +I
Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L  PS  +L  ++   W  GLKT  YYLR+R + +  + T+
Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTV 755

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
                K      +    S      P + 
Sbjct: 756 DASTLKTAKSLNSSAKPSPTPSPAPGAS 783


>gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
 gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
          Length = 810

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/831 (35%), Positives = 464/831 (55%), Gaps = 45/831 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL D V +  V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGHKEPVMFDKITDRIKKLCYGLNDMVDAVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L +           K+    M  +Y     R  +E 
Sbjct: 61  ETAASMTVSHPDYAQLAARIAISNLHKNT--------NKSFSETMNEMYHYVNPRTNQEA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ   MR
Sbjct: 113 PLISDEVYEVIKANAEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           V++G+ + + E     +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D + G
Sbjct: 173 VSVGIHMNDLEA---VIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   YLETWH D+ EFLDL+KNTG +  R  D+  A W  DLFMKRV ++A WTL
Sbjct: 290 GKRKGSFAIYLETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL ++YG EFE  Y +YE +         + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPDLDNVYGDEFEALYTSYEAKGKGR-----KTIRARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI+L     N +F+++ L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +  +   R L+ VID N + +++A+ SN  HR +GLG+ G   A  ++ +P+ S EA +
Sbjct: 465 FTVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A+E G YS+F+GS   +G F  +   +  E         +
Sbjct: 525 VNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPISKGEFQHNLWNIKDE-------ELS 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWASLRKEVMANGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+++L  R LW+E +  ++  H+GS+ +I+RIP DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLHDLVDRGLWNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDK 757

Query: 921 -------------GKLNAVPVTDPNSSTHSLGIPSSCTS-----DTECEVC 953
                         K+ A+ V +  S   +    +           +CE+C
Sbjct: 758 VAAPIEVKPQTEVKKVEAIAVLEEPSEMTAEEYRAMVEMARNAGPEDCEMC 808


>gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
 gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
          Length = 903

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/803 (33%), Positives = 431/803 (53%), Gaps = 39/803 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYHGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSAVVSDLYTYVNPKN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G    ++ + +          L + + Y+RDF +++ G + L   Y L ING   E PQ 
Sbjct: 110 GKSQPMISDYIYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ EK   A+E Y+ +S  +F  ++PTLFN+GT +PQ+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPNPQMSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EFE  Y  YER+    E      + A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGDEFEELYTRYERENKGRE-----TVRAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L +       +
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL        R L+ +I++N + +E+A++SN  HR IGLG+ G   A   L +P+ 
Sbjct: 462 FDFHKLHEVTMVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A+++S ++A+E G Y++++GS   +G    D  G+       
Sbjct: 522 SPEAKKLNTQIFETIYHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                +    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----SDLWDWASLKDKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHS 937
           T+     ++    V      T  
Sbjct: 752 TVDQEALQVTDTNVARALPKTRK 774


>gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/838 (34%), Positives = 454/838 (54%), Gaps = 60/838 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYASLAARIAVSNLHKNT--------KKSFSETIKVMYYHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 AMKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    AV  Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+ DLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EFE  Y  YER+         + + A  LW ++L    ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGEEFEKLYTQYEREGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +       
Sbjct: 402 TPYMLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKL          L+ +ID+N + ++ A++SN  HR IG
Sbjct: 462 MESHPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL + + SPEA ++  +  E I +HA+  S ELA + G Y ++ GS   
Sbjct: 522 IGVQGLADTFILLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPIS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G++           +SR  WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVMP----------SSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + +++ Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 PDDLKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-THSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L+  P+ +     T    +  S T+  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTS--MLHEKPMAEEEDDNTKMAQMVCSLTNREECLAC 807


>gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
 gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
          Length = 895

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/775 (35%), Positives = 417/775 (53%), Gaps = 37/775 (4%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                   ++   + + C GL    V    V  +    +Y G++  +L+     ++  L 
Sbjct: 34  RKERVQFDKITARISKLCYGLDLNFVDPIEVAQKVVVGVYQGVTTVELDNLAAETAAYLT 93

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            K P+YA + AR  +  L +E         +K+    M+ LY     +    G  A ++ 
Sbjct: 94  TKHPDYAVLAARIAVSNLHKET--------KKSFSQVMKDLYEYVNPKN---GKPAGMIS 142

Query: 271 ESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           +   +    +   L + + Y RDF + Y G + L   Y L +NG   E PQ   MRVA+G
Sbjct: 143 KETWEVIRDNADTLDSAIIYNRDFNYNYFGFKTLERSYLLRLNGRVAERPQHMIMRVAVG 202

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGA 386
           +  ++ +   R +E YNL+S  +F  ++PTLFN+GT HPQLSSCFL  +  D + GI+  
Sbjct: 203 IHGRDID---RVLETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDT 259

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445
           L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QG  KR 
Sbjct: 260 LKNCAMISKTAGGIGLNIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRP 319

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   Y+E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  +  W+LF P+
Sbjct: 320 GAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFCPN 379

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E   LHD++  EFE  YE YE++         + I A  LW  +L    ETG P++ +KD
Sbjct: 380 EAPGLHDVHSAEFEELYERYEKEGRAR-----KTIRAQKLWYAILEAQIETGGPFMVYKD 434

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N +S Q+++G + SSNLCTEI   SS +ETAVCNL S+ L     +  +D+ KL    
Sbjct: 435 HANAKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIKDGVYDFKKLHEVT 494

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +     L+ +ID+N + I +A++SN  HR IG+G+ G   A   L +P+ S  A E+  +
Sbjct: 495 KVVTYNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQ 554

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I   A+ AS E+A   G Y +++GS   QG    D  G+            +    
Sbjct: 555 IFETIYHAALEASSEIAARDGPYETWEGSPASQGQLQYDLWGVKP----------SDLWD 604

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +
Sbjct: 605 WASLKAQIAKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPW 664

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ EL    LWD+ M + +  H+GS+ NI  IP D+K I+ T +EI    +I+ A+ R  
Sbjct: 665 LLRELVDLGLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGA 724

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           +I Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A    + T+   
Sbjct: 725 FICQSQSLNVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQS 779


>gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
 gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
          Length = 825

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/812 (36%), Positives = 445/812 (54%), Gaps = 33/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRKELIMFDKITARVRKLCYGLNGLVDPLKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K+    M+ LY     R    G
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMEDLYTYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + +      + V L + + Y RDF ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKAPLLSDEVYKVIAENSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + +      E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSIGIHLDDLDA---VKETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ EFL+L+KN G +  R  D+  A WI DLFMKRV  N  
Sbjct: 287 QGGGKRKGSFAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEE 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L   + +EFE  Y  YE      E K  + + A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPGLFTNHSEEFEKLYLKYE-----SENKGRKTVRARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR IGLG+ G   A  LL +P+ S E
Sbjct: 462 KELFRVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS+E A+E G YSS+ GS   QG F  +  G+  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W +L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWTKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    +W+E M  +L   +GSI +IE IP D++ ++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL 
Sbjct: 695 MSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
               K   V    P ++T + G+ ++      
Sbjct: 755 NSKKKEEPVEAEVPLAATPAPGVANAIEVKPT 786


>gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980]
 gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980 UF-70]
          Length = 910

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/807 (34%), Positives = 441/807 (54%), Gaps = 40/807 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C  L    + +  +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKERVQFDKITARVSRLCYALDPDHIDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K   H ++ LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +   +  +     L + + Y+RDF ++Y G + L   Y L ++G   E PQ 
Sbjct: 110 GKASPMISKETFECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQ 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNL+S+ +F  ++PTLF++GT   QLSSCFL  +  D
Sbjct: 170 MIMRVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  GA+I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIDGIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG+EFE  YE+YE+          + I A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGEEFEALYESYEKAGKGR-----KTIKAQKLWYSILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E A CNL SI L          
Sbjct: 402 NPFMLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGT 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL   ++  VR L+ +IDIN + +++A++SN  HR I +G+ G   A   L +P+ 
Sbjct: 462 YDFQKLHEVVQVVVRNLNKIIDINYYPVQEARRSNFRHRPIAVGVQGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E I   A+++SVE+A+E G Y +++GS   +G    D  G+       
Sbjct: 522 SPEAKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                +    WD LK+ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----SDLWDWDSLKQSIKQHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QS+N+++ +P+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IVQMAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           T+   +  L A        +T    +P
Sbjct: 752 TVDQ-EALLVADTNVARERTTKKRTLP 777


>gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum]
          Length = 808

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/833 (33%), Positives = 444/833 (53%), Gaps = 50/833 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              K  +   DG     +  ++   +++ C GL    V    +  +    +Y G++  +L
Sbjct: 4   TPTKNYVCKRDGRKEEVHIDKITSRIQKLCYGLNMEFVDPVSITLKVISGLYPGVTTVEL 63

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +T    ++  +    P+YA + AR  +  L +E         +K     +  L+     +
Sbjct: 64  DTLAAETAAMMTTNHPDYAILAARIAVSNLHKET--------KKQFSDVIDDLHKAVSSK 115

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
              +       H +++  +   L + + Y+RDF++ Y G + L   Y L ING  +E PQ
Sbjct: 116 TGRKTQMISDEHHAIVMKNADRLNSCIIYDRDFSYNYFGFKTLERSYLLKINGKIVERPQ 175

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MRVA+G+   + +    A+E YN +S  +F  ++PTLF++ T  PQLSSCFL T+P 
Sbjct: 176 HMLMRVAVGIHGSDID---SAIETYNYMSEKYFTHASPTLFSAATPKPQLSSCFLVTLPE 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ----GVIPFLKVAND 433
           D+L GI   L + AM++K +GGLG     +R  G     T   +     G++P L+V N+
Sbjct: 233 DNLEGISRCLTQCAMISKTAGGLGVSIHNLRAKGTTFRTTLAGTPKVSDGIVPVLRVFNN 292

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +A  V+QG  KR GA   YLE WH D+ +FL+L+KNTG ++ R  D+  A W PDLFM+R
Sbjct: 293 SARYVDQGGNKRPGACAIYLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W+L  P +   L D +G+EFE  YE YE           R++ A  +WR +   
Sbjct: 353 VKNDEKWSLMCPHQSPGLADCWGEEFEKLYEKYETDGR-----YVRQLPARDVWRAICVS 407

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI +     
Sbjct: 408 QVETGTPYMLYKDACNRKSNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVK 467

Query: 613 NNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            ++  +D++KL    +   + L+ VID+N + + +A+KSN  HR +G+G+ G   A  LL
Sbjct: 468 ADRSGYDFNKLKEITKVVAKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILL 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ SPEA  +  +  E + + A+ AS ELA++ G Y +++GS   QGV   D  G+  
Sbjct: 528 RMPFDSPEAKALNRQIFETLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTP 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     T+   W +LKK++   G+RNS  +A  PTA+ A I G ++S +P   N+Y
Sbjct: 588 ----------TNLWDWSDLKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIY 637

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           V+  +SG+F VVN  L+ +L +R LWD+ M + +  + GSI NI  IPDDLK+++ T +E
Sbjct: 638 VRRVLSGEFQVVNQHLLKDLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWE 697

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I+ A+ R  +IDQ+QS+N+++  P+   +  ++   W  GLKT  YYLR++ A 
Sbjct: 698 ISQKVIIDMAADRGAFIDQSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAA 757

Query: 910 SVEKSTLKGVD---------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +  + T+             GK+     T    +     +  S  +   CE+C
Sbjct: 758 NPIQFTVDKSKLITKTSTGVGKVQETKTTPEEEA----ALVCSLRNPEACEMC 806


>gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 833

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/834 (33%), Positives = 448/834 (53%), Gaps = 61/834 (7%)

Query: 152 GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           G   + +  ++   +++ C GL  + +   ++  +    +Y G++  +L+      S T+
Sbjct: 27  GRREAVHFDKITSRIKKLCYGLNMEHIEPILISQKVIAGLYQGVTTVELDNLAAEISATM 86

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             K P+YA + AR  +  L +E         +K     +  LY             + ++
Sbjct: 87  TTKHPDYATLAARIAVSNLHKET--------KKVFSDVIDDLYQWINP---NTNKHSPMI 135

Query: 270 HES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
                 ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+
Sbjct: 136 SPKVHQIIQANSQRLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAI 195

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFG 385
           G+   + +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+ 
Sbjct: 196 GIHEDDIDA---AIETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYD 252

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L+E A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QG  KR
Sbjct: 253 TLKECAIISKSAGGIGLNVHCIRASGTYIAGTNGYSNGLLPMLRVFNNTARYVDQGGNKR 312

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   YLE WH D+ +FLD +KNTG +  R  D+  A WIPDLFMKR+  +  W+L  P
Sbjct: 313 PGAFAVYLEPWHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMCP 372

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E   L DL+G EFE  YE YE Q         R+I A  LW  ++    ETG P++ +K
Sbjct: 373 HECPGLADLWGDEFEKLYEKYEAQGKHK-----RRIKAQQLWYAIIESQIETGTPFMVYK 427

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLA 622
           D CN +S QQ++G +  SNLCTEI   SS +ET+VCNL SI  N   + A  +FD+ KLA
Sbjct: 428 DACNRKSNQQNLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLA 487

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +     L+ +ID N + +  A+KSN  HR IG+G+ G   A  L+  P+ S EA  +
Sbjct: 488 EVTKVVTVNLNKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLL 547

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ +S +LA++ G Y +++GS   +G+   D             +  T 
Sbjct: 548 NKKIFETIYYAALESSCDLAKQFGPYETYQGSPASKGILQYDMWN----------VQPTD 597

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ LK R++  G+RNS  +A  PTA+ A I G ++S++    N+Y +  +SG+F +V
Sbjct: 598 LWDWESLKCRIEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIV 657

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+ +L +  LWDE++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ 
Sbjct: 658 NHHLMKDLVELGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAE 717

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD- 920
           R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T+  +  
Sbjct: 718 RGAFIDQSQSLNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDKLAL 777

Query: 921 -------------------GKLNAVPVTDPN--SSTHSLGIPSSCTSDTECEVC 953
                               K    P +  N  ++ ++L       +  EC +C
Sbjct: 778 KQKKTKEEEEGQRPNGGYVDKSRKFPTSGDNWSNNVNALLQQCRLENGNECMLC 831


>gi|225438479|ref|XP_002278202.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/837 (35%), Positives = 453/837 (54%), Gaps = 59/837 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+   + +    +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ 
Sbjct: 110 GLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDID---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EF   Y  YER+         + + A  LW ++L    ETG
Sbjct: 347 HWSLFCPNEAPGLADCWGQEFVDLYTQYEREGK-----AKKVVQAQNLWFEVLKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S++ETAVCNL SI L  +       
Sbjct: 402 TPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IG
Sbjct: 462 MESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPVETAKRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G      LL + + SPEA ++  +  E I +HA+ AS ELA   G Y ++ G    
Sbjct: 522 LGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            +SR  WD L+K +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y +GS+  +  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+DLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 PEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L     T  +  T    +  S T+  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 806


>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae]
 gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]
          Length = 812

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/829 (35%), Positives = 437/829 (52%), Gaps = 48/829 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               S  L     +YA + AR  +  L +E         +K      + LY        E
Sbjct: 71  AAEISAGLTCNHADYAILAARIAVSNLHKET--------RKVFSDVFEALYTHVNK---E 119

Query: 262 EGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             ++A L+ E        +   L + + Y+RDF + Y G + L   Y L ING   E PQ
Sbjct: 120 TNLRAPLVSEFHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERSYLLKINGKVAERPQ 179

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  
Sbjct: 180 HMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTA 236

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  
Sbjct: 237 DSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARY 296

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A WIPDLFMKRV  N
Sbjct: 297 VDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEAN 356

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P +   LHD++G EFE  Y  YE++         R + A +LW  ++    ET
Sbjct: 357 EDWSLMCPHKCPGLHDVWGDEFEKLYVKYEQEGRAN-----RTVKAQSLWFAIIESQVET 411

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQ 615
           G+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L         
Sbjct: 412 GNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTPEKT 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +T  R L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L+  PY 
Sbjct: 472 YDFKKLKEVTKTVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALILMRYPYE 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I F A+ AS ELAQ+ G Y +++GS   +G+   D           
Sbjct: 532 SEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYDMWDKTP----- 586

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +
Sbjct: 587 -----TGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVL 641

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI    
Sbjct: 642 SGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWEISVKS 701

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
            I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + 
Sbjct: 702 TIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQF 761

Query: 915 TLKGVDG----------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+               K  +    + +       +  S  +   C  C
Sbjct: 762 TVDKKMSALKINGQNGVKEESAQDYESDRERKMADMVCSLENKDACMSC 810


>gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
 gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
          Length = 814

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/840 (34%), Positives = 450/840 (53%), Gaps = 59/840 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+   GL    V    V  +    +YDG++ ++L+   
Sbjct: 1   MYVIKRDGRRESVKFDKVTARIEKLSYGLDATYVQPVEVAKKVVSGIYDGVTTAELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +  L        K+    M+ LY     +    
Sbjct: 61  AETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSATMKRLYTYIDSK---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+   + +    +   L + + Y+RD++++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GENASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYKTLEKSYLLKVEGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     E  + A+E Y+LLS   F  +TPTLFN+GT  PQ+SSCFL T+  D
Sbjct: 170 MLMRVAIGIHQ---EDVQAAIETYHLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A++++ +GG+G     VR  G +I GTNG+S G++P L+V NDTA  V
Sbjct: 227 SINGIYDTLKNCALISQSAGGIGLSIHDVRATGTYIKGTNGQSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   Y+E WH D+ +FLDL+KN G + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVEAND 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D + +EFE  YE YER+         + I A  LW  ++    ETG
Sbjct: 347 TWSLFCPHECPGLADTHSEEFEKLYEQYEREGRAR-----KTIKAQDLWFAIMESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL SI L          
Sbjct: 402 TPYMLYKDHANSKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVEQGADG 461

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+ KL    +   R L+ +ID+N + + +A+KSN  HR IG+G+ G   A  ++ +
Sbjct: 462 FMHFDHQKLYEITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLADAFCMMRM 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA  +  +  E I + ++ AS+ELA + G Y ++ GS   QGVF  D   +  E 
Sbjct: 522 PFDSDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDMWNVTPES 581

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           +         R  W++L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+YV+
Sbjct: 582 K---------RWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN +L+ +L +  LW E M ++L    GS+  I  IP ++K ++ TA+EI 
Sbjct: 633 RVLSGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLYKTAWEIK 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              L++ ++ R  +I Q+QSLN++++E +  KL  ++  AW  GLKT  YYLR+R+A+  
Sbjct: 693 QRSLLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLRTRAASDP 752

Query: 912 EKSTL-KGVDGKLNAVP-----------------VTDPNSSTHSLGIPSSCTSDTECEVC 953
            + T+ K  + +L                             +   +  S      CE C
Sbjct: 753 VQFTVSKQAEPQLEPATAVVAEKELNYVQYAEEHAKPAAPRDNRSDMQCSLDDPEGCEAC 812


>gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 811

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/838 (34%), Positives = 450/838 (53%), Gaps = 58/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGRQEAVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R    
Sbjct: 61  AETAAAMTANHPDYAILAARIAVSNLHKNT--------KKSFSETVKDMYYHVNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + D    +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ 
Sbjct: 110 GLKSPLIADDVYDIIIKNAPRLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRV++G+     E  +  ++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIH---KENIEAVLKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKND 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGLSVHNIRTTGSYIRGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ E+LDLRKN G +  R  D+    WIPDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEWLDLRKNHGKEESRARDLFYGLWIPDLFMQRVQNNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G++FE  Y  YE +         + + A  LW  +L    ETG
Sbjct: 347 TWSLFCPNEAPGLADCWGEQFETLYARYELEGR-----AKKVVQAQKLWFAVLEAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
           +P+I FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCNL S+ L          
Sbjct: 402 NPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASLALPRFVREKGVS 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD++KL        R L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 LESHPTKIIGSNGHENRFFDFNKLGEITSLVTRNLNRIIDVNYYPVETARRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G   A  LL +P+ S EA ++  +  E I +HA+  S ELA E G Y ++ GS   
Sbjct: 522 LGVQGLADAFILLGMPFDSEEAQQLNRDIFETIYYHALKTSCELAAEEGVYETYAGSPIS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G    D   +            ++R  WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGALQPDMWNVKP----------STRWDWDSLRQMILNNGVRNSLLLAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+N+L    LW   + + + YH+GSI  I+ I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTNMGLWTHDLKNQVIYHNGSIQQIDVI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLKKI+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GL
Sbjct: 692 PDDLKKIYRTVWEIKQRSIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYTWTKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      +     V   N       +  S  +  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDQSSIKQETPAAVVSNNLEEKMSQMVCSLENKDECMSC 809


>gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase, subunit alpha [Conexibacter
            woesei DSM 14684]
 gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter
            woesei DSM 14684]
          Length = 1091

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/972 (42%), Positives = 593/972 (61%), Gaps = 41/972 (4%)

Query: 1    MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
            +  ++    GD+ A              +++I+R+G VT+++P+KI  AI KAF++++  
Sbjct: 143  LRRARPSASGDDVAARPAG--------ALRLIRRSGHVTAWEPAKIEVAIRKAFLSLQAD 194

Query: 61   GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
                     +    L  +   R   H      V IE +QD V+  L+ +GH +    Y++
Sbjct: 195  S--------EPAVALAARVSER--AHALGMAYVPIETVQDIVQEELVLAGHMRAAERYIV 244

Query: 121  YREERSDVRAAQSHS--KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVS 177
            YR ERS +RA  +       +   P + ++  DGT   +  + L   +  A  GL   ++
Sbjct: 245  YRAERSLLRAQDAPVPGAPGSGAQPPVPVIELDGTESLWGGEDLRARIAFAAIGLDLPLA 304

Query: 178  SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
             + +  E  + +  G+  +DL    + +++ L+E++ ++++   R LL  +  E L    
Sbjct: 305  PEELERELRRAIRPGIKRADLRRLTVLNAKALVERDSDFSRFAGRILLSHVYEEALAWDI 364

Query: 238  KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
             +        ++  +       +E GV    +  ++ D+D+  LA  L    D  F++LG
Sbjct: 365  VRDGVGA---LKAAHERGLRALLEHGVAIGRIDPALHDYDVARLAAALDPTADLDFDFLG 421

Query: 298  LQILYDRYFLHING----SRIEMPQAFFMRVAM--GLALKETE---KEKRAVEFYNLLSS 348
            LQ LYDRY +         RIE PQ F+MRVAM   L  ++ +   +E+RA++ Y +   
Sbjct: 422  LQTLYDRYLIVDKKAAEPRRIETPQLFWMRVAMGVCLTARDGDPAAREERAIDLYTMYKQ 481

Query: 349  FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI-FGALQENAMLAKYSGGLGNDWTPV 407
              F  STPTLFN+GT H QLSSC+L  + D L  I    + ENAM +K++GGLG  WT V
Sbjct: 482  RRFCSSTPTLFNAGTPHSQLSSCYLYKIEDTLSSIVGRGIAENAMCSKWAGGLGGSWTAV 541

Query: 408  RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
            RG G+HI  TNG+SQGV+PFLK+ ND  VAVNQGGKR G+ CAYLE WH D+ EFL+LR+
Sbjct: 542  RGTGSHIESTNGESQGVVPFLKMHNDQLVAVNQGGKRAGSGCAYLEVWHNDIREFLELRR 601

Query: 468  NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
            NTGD+RRRTHDMNTANWIPDLFMKRV     WTLF  ++V DLH+ YG++FE  YE YE 
Sbjct: 602  NTGDERRRTHDMNTANWIPDLFMKRVEAREQWTLFRSNDVPDLHETYGRDFEARYEAYEA 661

Query: 528  QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            + D GE+    +I A+ LW++ML +LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTE
Sbjct: 662  RVDAGELH-GERIPAIELWKQMLKLLFETGHPWITFKDPCNVRSPQDHAGVVHSSNLCTE 720

Query: 588  ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            ITLN+  +ETAVCNLGS+ +  H  A  + D+ KL +TIR AVR LD+VID+N +  E A
Sbjct: 721  ITLNTGPDETAVCNLGSVVIDQHLDAAGEIDHAKLRATIRVAVRALDDVIDVNFYPTEPA 780

Query: 647  KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + +N  HR +GLG+MG Q AL+   + + SPEA+   DE ME I+F+A  AS +LA ERG
Sbjct: 781  RTANGRHRPVGLGVMGLQYALYRKGLAFGSPEALAFGDEMMEAIAFYAYEASSDLAAERG 840

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             Y S+ GS WD+G+ P D++ LL E R + + + R  R+ W  L+ ++   GMRNSN +A
Sbjct: 841  TYQSYAGSKWDRGLLPQDTLDLLEEERGQPIEVERGGRMDWTPLRAKIAAQGMRNSNVLA 900

Query: 766  IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            IAPTATIANI G S  I+P Y+NL+ KSN+SGDFT++N FLV +LK   +W  A+   LK
Sbjct: 901  IAPTATIANIMGTSPCIEPMYKNLFAKSNLSGDFTILNPFLVRDLKAAGVWSGALAERLK 960

Query: 826  YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
              +G +  +  +P  L+ ++ TAF+I+P  LI++A+RRQKWIDQ+QSLNL+L  P  K +
Sbjct: 961  VVEGDLEQVPEVPAALRALYRTAFQIEPERLIDAAARRQKWIDQSQSLNLFLAAPDLKAM 1020

Query: 886  DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
              +YR+AW  GLKTTYYLR+  A+++EK+T+              P ++  +  +  S  
Sbjct: 1021 SHMYRRAWHAGLKTTYYLRTLGASAIEKATVAAPAAATVPAAAGMP-TAPDAEALACSIE 1079

Query: 946  ---SDTECEVCQ 954
               +  ECE CQ
Sbjct: 1080 AMRNGEECEACQ 1091



 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 101 QVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK 160
            VE +L+ +GH+++ +  VL        R + S     A  A  L+++   G + ++   
Sbjct: 124 LVEAALIDAGHYELAKALVL-----RRARPSASGDDVAARPAGALRLIRRSGHVTAWEPA 178

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKN 188
           ++E+ + +A   LQ  S   V      +
Sbjct: 179 KIEVAIRKAFLSLQADSEPAVALAARVS 206


>gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/837 (35%), Positives = 451/837 (53%), Gaps = 59/837 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVWKRDGRQETVHFDKITARLKKLSYGLSPEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L    P+YA + AR  +  L +          +K+    ++ +Y     R    
Sbjct: 61  AETAAALTANHPDYASLAARIAVSNLHKNT--------KKSFSETVKDMYNHISER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L ING+ +E PQ 
Sbjct: 110 GLKAPLISDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKINGNVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +RG G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRGTGSYIRGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLD+RKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G++FE  Y  YER+         + + A  LW ++L    ETG
Sbjct: 347 QWSLFCPSEAPGLADCWGEDFEKLYTKYEREGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +    +  
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKEVP 461

Query: 616 ------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+ KLA         L+ +ID+N + +E AK+SN  HR IG
Sbjct: 462 DESQPSKLVGSRGSKNRYFDFAKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G      LL + + SPEA ++  +  E I +HA+ AS ELA + G Y ++ GS   
Sbjct: 522 LGVQGLADTFILLGMSFDSPEAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            + R  W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVTP----------SDRWDWGVLRGMIAKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNRIIYDDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P DLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 PQDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L   P T  +  T    +  S ++  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDTS--MLKEKPQTAVDDDTKMAQMVCSLSNRDECMAC 806


>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
 gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
          Length = 815

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/842 (34%), Positives = 454/842 (53%), Gaps = 62/842 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYMHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+ E + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLMAPLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ E    A+  Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKEDIE---SAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EF+  Y+ YE Q         + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPGLADCWGEEFDNLYKKYESQGK-----AKKVVPAQTLWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEFTSPNETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD++KLA    T    L+ +IDIN + +E AK+SN  HR IG
Sbjct: 462 LESHPSKLVGSSDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I +H++ AS ELA + G Y +++GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           ++R  W  L++ +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWDVVP----------SNRWNWPSLRETISKVGIRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++ +  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPV-----TDPNSSTHSLGIPSSCTSDTECE 951
           KT  YYLR+R+A    K T+     K N   V     T+ +       +  S  +  EC 
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTTLLKENGNVVSNGKPTEEDVEAKMAQMVCSLNNREECM 811

Query: 952 VC 953
            C
Sbjct: 812 AC 813


>gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa]
 gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/837 (33%), Positives = 445/837 (53%), Gaps = 57/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++   GL        +V  +    +Y G++ + L+   
Sbjct: 1   MYVIKRDGRQEPVRFDKITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR  + +L +          +K+    ++ +Y          
Sbjct: 61  AETAASMTANHPDYALLAARISVSRLHKNT--------KKSFSETIELMYNNLNKG---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GQKAPLIADDVYEIIMKNAERLDSEILYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A + Y+L+S   F  +TPTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 LLMRVAVGIHKDDIE---SATKTYHLMSQSWFTHATPTLFNAGTAQPQLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +   G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKECAVISKLAGGIGIAVHNIHATGSYIRGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  + 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDD 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G+EFE  Y  YER     E +  + ISA  LW ++L    ETG
Sbjct: 347 KWSLFCPSEAPGLADCWGQEFEKLYTQYER-----EDRAKKIISARKLWFEILNSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTE+   +S  ETAVCNL S+ L          
Sbjct: 402 TPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD++KLA    T    L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 AESQSSKMVGSRESKNRYFDFEKLAEVTTTITANLNKIIDVNYYPVETARRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ S EA  +  +  E I +HA+ +S ELA + G Y ++ GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+  +D  G+            + R  WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQMDMWGVTP----------SDRWDWDALREMISKSGVRNSLLIAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F V+N  L+N+L +  LW   + + +    GS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+ LK I+ T +EI    L++ A+ R  +IDQ+QSLN+++++P   KL  ++  AW  GL
Sbjct: 692 PEQLKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR+R+A    K T+             + + ++       S  +  EC  C
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTTVLNNENANKAEDDVNSDMAQAACSLQNREECMAC 808



 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 75/253 (29%), Gaps = 40/253 (15%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + VIKR+G      FD  KI+  + K    +        +  Q +   +     T  L  
Sbjct: 1   MYVIKRDGRQEPVRFD--KITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDE 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M + H         Y    + +  ++ H  +    +  ++
Sbjct: 59  LAAETAAS------------MTANHPD-------YALLAARISVSRLHKNTKKSFSETIE 99

Query: 147 IMMDD-----GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           +M ++     G      +  +  I+ +    L    S+I+    ++  Y G     LE +
Sbjct: 100 LMYNNLNKGSGQKAPLIADDVYEIIMKNAERL---DSEILYDRDFEYDYFGFKT--LERS 154

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            +      I + P +  +  R  +  + +       +   K  H   Q  +         
Sbjct: 155 YLLKVDGKIVERPQHLLM--RVAV-GIHK----DDIESATKTYHLMSQSWFTHATPTLFN 207

Query: 262 EGVKARLLHESMM 274
            G     L    +
Sbjct: 208 AGTAQPQLSSCFL 220


>gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/837 (34%), Positives = 451/837 (53%), Gaps = 59/837 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLSYGLSPDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +         P+K+    ++ +Y     R    
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHK--------TPKKSFSETIKDMYYHVSER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ 
Sbjct: 110 GLKAPLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YL+ WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G++FE  Y NYE++         + + A  LW ++L    ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGEDFEKLYINYEKEGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +       
Sbjct: 402 TPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPAETAVCNLASIALPRYVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IG
Sbjct: 462 SESQPSKLVGSRGSKNRYFDFDKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL + + S EA ++  +  E I +HA+ AS ELA + G Y ++ GS   
Sbjct: 522 IGVQGLADTFMLLGMAFDSREAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            + +  W  L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGIIQPDMWGVTP----------SDKWDWVALREMITKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+ +L +  LW  A+ + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLYDLTEMGLWSPALKNRIIYEDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PD+LK+I+   +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++   W  GL
Sbjct: 692 PDELKEIYKNVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L   P T  +  T    +  S T+  +C  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVD--TAMLKEKPKTAVDDDTKMAQMVCSLTNREDCLSC 806


>gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 779

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/810 (34%), Positives = 441/810 (54%), Gaps = 48/810 (5%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           G   + +  ++   +++ C GL    V   ++  +    +Y G++  +L+     ++ T+
Sbjct: 8   GRRETVHFDKITSRIQKLCYGLNMDFVDPCLITQKVINGLYPGVTTVELDNLAAETAATM 67

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             K P+YA + AR  +  L +E         +K     ++ LY     +     ++  ++
Sbjct: 68  TTKHPDYAILAARIAISNLHKET--------KKVFSEVVEDLYNMVSEK---TRLRTPMI 116

Query: 270 HESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            +        +     + + Y+RDF + + G + L   Y L ING  +E PQ   MRV++
Sbjct: 117 SDETYKIVMENAEAFNSAIIYDRDFNYNFFGFKTLERSYLLKINGKVVERPQHMLMRVSV 176

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+   + E     +  YNL+S   F  ++PTLFNSGT  PQLSSCFL  +  D + GI+ 
Sbjct: 177 GIHGADVE---SVLNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKDDSIEGIYD 233

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR
Sbjct: 234 TLKQCALISKSAGGIGVNIHCIRASGSYIAGTNGTSNGLVPMLRVYNNTARYVDQGGNKR 293

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   YLE WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV Q+  W+L  P
Sbjct: 294 PGAFAMYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWSLMCP 353

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E   LH++YG++FE  Y  YE     GE +  R++ A  LW  +L    ETG P++ +K
Sbjct: 354 HECPGLHEVYGEDFEKLYTKYE-----GEKRYRRQVQAQQLWYAILESQIETGTPYMLYK 408

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D CN +S Q+++G +  SNLCTE+   ++ +E AVCNL SI L        FD+ KL   
Sbjct: 409 DACNSKSNQKNLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVHEGSFDFQKLREV 468

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +   + L+ +IDIN + I +A+KSN +HR IG+G+ G      LL +P+   +A  +  
Sbjct: 469 SQVITKNLNRIIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKARLLNK 528

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I + A+ AS +LA+E G Y ++ G    QG+   D  G+            T   
Sbjct: 529 QIFETIYYGALEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTP----------TDMW 578

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK R+   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN 
Sbjct: 579 DWAALKARIAQYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQ 638

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L+ +L  R LW+E + + L  ++GS+  ++ IPDDLK+++ T +EI    +++ A+ R 
Sbjct: 639 HLLKDLTDRGLWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMAADRG 697

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            ++DQ+QSLN+++ +P+  KL  ++   W +GLKT  YYLR++ A S  + T+     + 
Sbjct: 698 AFVDQSQSLNVHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKTALRK 757

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                           +  S  +  EC +C
Sbjct: 758 KE----------QMNAVTCSLKNKDECLMC 777


>gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 706

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/699 (57%), Positives = 509/699 (72%), Gaps = 3/699 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLA 704


>gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 806

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/832 (35%), Positives = 459/832 (55%), Gaps = 51/832 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL D V +  V     + +YDG++ S+L+    
Sbjct: 1   MYVIKRDGHKEPVMFDKITERIKKLCYGLNDLVDAVKVAMRVIEGLYDGVATSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L             K+    M  +Y     R    G
Sbjct: 61  ETAASMTIAHPDYAQLAARIAISNLH--------SNTNKSFSETMNEMYHYVNPRN---G 109

Query: 264 VKARLLHESM---MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +A LL E +   +  +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ  
Sbjct: 110 QEAPLLSEEVHTVIQENAAFLNSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L +    K  +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSVGIHLNDL---KSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+ETWH D+ EFLDL+KNTG +  R  D+  A W  DLFMKRV +N  
Sbjct: 287 QGGGKRKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGD 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L+D+YG+EFE  Y NYE+          + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPGLYDVYGEEFEKMYTNYEKAGKGR-----KTIKAHELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL S++L     N  F++
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L +  +   R L+ VID N + +++ + SN  HR IGLG+ G   A  +L +P+ S +
Sbjct: 462 DLLFTVTKRVTRNLNKVIDRNYYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQ 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS+E+A E G YS+F GS   QG F  +  GL  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASMEMAIEEGPYSTFAGSPISQGEFQYNLWGLKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWANLRKEVMKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L +R LW E +   L   +GS+  +  IP DLK+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLNDLVERGLWTEDLKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIID 693

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  ++DQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL 
Sbjct: 694 MSRQRGYFVDQSQSLNLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLN 753

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS----------------DTECEVC 953
             D K   + +     +T +   P + T                   +CE+C
Sbjct: 754 N-DKKAEPITIEVKQQTTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDCEMC 804



 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 37/239 (15%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + VIKR+G      FD  KI+  I K    +     +  + ++ +I+ L +   T  L +
Sbjct: 1   MYVIKRDGHKEPVMFD--KITERIKKLCYGLNDLVDAVKVAMR-VIEGLYDGVATSELDN 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M   H         Y +  + +  +  HS ++   +  + 
Sbjct: 58  LAAETAAS------------MTIAHPD-------YAQLAARIAISNLHSNTNKSFSETMN 98

Query: 147 -----IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                +   +G      S+ +  +++E  + L    S I+ +  +   Y G    +    
Sbjct: 99  EMYHYVNPRNGQEAPLLSEEVHTVIQENAAFLN---SHIIYTRDFNYDYFGFKTLERSYL 155

Query: 202 LIFSSRTLIEKEPNY--AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           L       I + P +   +V+    L  L + V+ T     +K   H    L+     +
Sbjct: 156 LKI--NGKIVERPQHMLMRVSVGIHLNDL-KSVIETYDLMSKKFFTHATPTLFNAGTPK 211


>gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 813

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/840 (33%), Positives = 450/840 (53%), Gaps = 60/840 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    +++  + + C GL    V+  ++  +  + +Y G++ ++L+   
Sbjct: 1   MYVVKRDGKKQSCQFDKIQSRISKLCYGLDQKFVNEAVISQKVIQGVYPGVTTTELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   + P+YA + AR  +  L +E      K  +   ++            + + 
Sbjct: 61  AQTAASFSTQHPDYAVLAARIEVSNLHKETEKQFSKVVEAFYNYT-----------HPKT 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + D    +   L   + ++RDF F+Y G + L   Y L ++G   E PQ 
Sbjct: 110 GEPAPLVSKEVYDVVNANKDVLDGAVIHDRDFEFDYFGYKTLEKSYLLKLHGEIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRV++G+ + + E   R +E YNLLS   F  +TPTLFN+GT +PQ+SSCFLT +  D
Sbjct: 170 MLMRVSVGIHMGDIE---RVLETYNLLSQRFFTHATPTLFNAGTPNPQMSSCFLTCIKAD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++KY+GG+G   + VR   ++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIDGIYDTLKNCAVISKYAGGIGMSISNVRASASYIRGTNGTSNGIVPMLRVFNNTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG++ AY+E WH D+  FLDLRKN G++  R  D+  A WIPDLFM+RV QN 
Sbjct: 287 DQGGGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L   +G+EF+  YE YER+         + I A  LW  +L    ETG
Sbjct: 347 DWTLMCPNECPGLDTCWGEEFKTLYEKYEREGKGR-----KTIKAQQLWFAVLDSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----- 612
            P++ +KD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L          
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPADNF 461

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                FD + L    +   + L+ VID N + +E+A++SN  HR IG+G+ G   A  ++
Sbjct: 462 GGEGHFDLENLKHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFMMM 521

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ SPEA ++  +  E I F A  AS+ELA++ G Y +++GS   +G    D  G   
Sbjct: 522 KLPFESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWG--- 578

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                  +  ++   W  LK ++   GMRNS  MA  PTA+ A I G ++S +P   N+Y
Sbjct: 579 -------VEPSNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMY 631

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  ++G+FT+VN  L+ EL    LW E + + +    GS+  +  IP  ++ ++ T +E
Sbjct: 632 NRRVLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTVWE 691

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +++ A+ R  +I Q+QS+N+++ EPS  KL  ++  AW  GLKT  YYLR+R   
Sbjct: 692 IPQRAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTRPKA 751

Query: 910 SVEKSTL------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS----------DTECEVC 953
              + T+      +            +P+ ++ +     S  S          + EC  C
Sbjct: 752 DAIQFTVNQEMLAESTSKPAQDQLERNPSPTSVTAAGKVSVNSKFAGLQMKDEEEECLNC 811


>gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Leptosphaeria maculans]
          Length = 903

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/796 (34%), Positives = 432/796 (54%), Gaps = 39/796 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQT--------KKQFSAVVHDLYSYVNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G    ++ + +    +     L + + Y+RDF +++ G + L   Y L ING   E PQ 
Sbjct: 110 GKSQPMISDKVYKIVMAHADELNSAVVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ EK   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 MIMRVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EFE  YE+YE++    E      + A  LW  +L    ETG
Sbjct: 347 EWTLMCPNECPGLADVYGDEFEALYESYEKKGKGRE-----TVRAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L +       +
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ 
Sbjct: 462 FDFKKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A+++S ++A+E G Y ++ GS   QG+   D   +       
Sbjct: 522 SPEAKKLNIQIFETIYHAALTSSCDIAKELGPYETYAGSPVSQGILQYDMWNVTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWAALKEKIAQYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRT 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + 
Sbjct: 692 IIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTD 930
           T+     ++    V  
Sbjct: 752 TVDQEALQVADTNVAR 767


>gi|6320914|ref|NP_010993.1| Rnr1p [Saccharomyces cerevisiae S288c]
 gi|730514|sp|P21524|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1;
           AltName: Full=Ribonucleotide reductase large subunit 1
 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
           With Ligands And Subunit Peptides
 gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
           With Designed Adp Analog Compound
 gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae]
 gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291]
 gi|285811701|tpg|DAA07729.1| TPA: Rnr1p [Saccharomyces cerevisiae S288c]
          Length = 888

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/815 (34%), Positives = 428/815 (52%), Gaps = 44/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +    +                
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAA-----------T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ + + +    +   L + + Y+RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVALGIHGRDIEA---ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG
Sbjct: 347 TWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++  
Sbjct: 401 TPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDG 460

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL 
Sbjct: 461 KTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLR 520

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D       
Sbjct: 521 LPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP- 579

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 580 ---------YGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 630

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI
Sbjct: 631 RRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEI 690

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 691 SQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 750

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             + T+           V D ++      +PSS +
Sbjct: 751 AIQFTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118]
 gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796]
 gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3]
          Length = 888

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/815 (34%), Positives = 428/815 (52%), Gaps = 44/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +    +                
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAA-----------T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ + + +    +   L + + Y+RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVALGIHGRDIEA---ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG
Sbjct: 347 TWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++  
Sbjct: 401 TPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDG 460

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL 
Sbjct: 461 KTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLR 520

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D       
Sbjct: 521 LPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP- 579

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 580 ---------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 630

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI
Sbjct: 631 RRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEI 690

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 691 SQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 750

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             + T+           V D ++      +PSS +
Sbjct: 751 AIQFTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum]
          Length = 884

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/811 (34%), Positives = 438/811 (54%), Gaps = 41/811 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  D         ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVVKRDNRKERVQFDKITARVSRLCYGLDSEHVDAATITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSQVISDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++     +  +     L + + Y++DF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GRPASMISTETYETVMRHASELDSAIIYDKDFNYNYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ +K    +E YNL SS +F  ++PTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MLMRVAVGIHGEDVDK---VIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N TA  V
Sbjct: 227 SIDGIYDTLKTCAMISKTAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   Y+E WH D+ +F+DLRKN G +  R  D+  A WIPDLFMKRV  NA
Sbjct: 287 DQGGNKRPGAFAIYMEPWHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D++G+EFE  Y  YE      +    + I A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPGLADVWGEEFEALYNKYE----NTKDLARKTIKAQKLWYHILEAQTETG 402

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQ 615
           +P++ +KD CN +S QQ++G + SSNLCTEI   S+ +E AVCNL S+ L  +      +
Sbjct: 403 NPFMLYKDACNRKSNQQNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGE 462

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  ++ L+ +ID+N + + +A+KSN  HR +G+G+ G   A   L +P+ 
Sbjct: 463 YDFAKLHEVTKVVIKNLNKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFE 522

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SP+A ++  +  E I   A+ AS ELA+ +G Y +++GS   +G    D   +       
Sbjct: 523 SPQAKQLNIQIFETIYHAAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTP----- 577

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    WDELK++VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 578 -----TELWDWDELKEKVKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 632

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L    LW + M + +   +GSI NI  IPDD+K ++ T +EI    
Sbjct: 633 AGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKK 692

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +IE       +IDQ+QSLN+++  P+  KL  ++   W +GLKT  YYLR+++A +  + 
Sbjct: 693 VIEVC---GAFIDQSQSLNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQF 749

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           T+     K+    V     +   L      +
Sbjct: 750 TVDQEALKVADTNVARALPNKKRLPNTGYSS 780


>gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB]
          Length = 888

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/815 (34%), Positives = 427/815 (52%), Gaps = 44/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +    +                
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAA-----------T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ + + +    +   L + + Y+RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVALGIHGXDIEA---ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG
Sbjct: 347 TWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++  
Sbjct: 401 TPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDG 460

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL 
Sbjct: 461 KTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLR 520

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D       
Sbjct: 521 LPFDSEEARLLNIQIFETIYXASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP- 579

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 580 ---------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 630

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI
Sbjct: 631 RRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEI 690

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 691 SQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 750

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             + T+           V D ++      +PSS +
Sbjct: 751 AIQFTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase, subunit alpha [Weeksella
           virosa DSM 16922]
 gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella
           virosa DSM 16922]
          Length = 779

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/817 (35%), Positives = 452/817 (55%), Gaps = 48/817 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   + +   GL   +     +  +  + +YD ++ ++L+   
Sbjct: 1   MYVIKRNGKQEAVHFDKITARIHKLVYGLSVDEKDVIEIAKKVIQGIYDNVTTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T     P++A + AR  +  L +  L +  K  +    +                
Sbjct: 61  AETAATYTTVHPDFAVLAARISVSNLHKNTLKSFSKTAKLLYDYIDPV-----------T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
             +A LL E   D    +   + + + Y+RD+ F+Y G + L   Y +  NG   E PQ 
Sbjct: 110 NTRAPLLSEETYDIIRNNADEIDSSIIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+  ++    K A+E YNL+S   F+ +TPTLFNSGT  PQ+SSCFL ++  D
Sbjct: 170 LFMRVALGIHKQDI---KAAIETYNLMSEKWFIHATPTLFNSGTPKPQMSSCFLLSMTED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L+  A++++ +GG+G     VR  G++I GT G S G+IP L+V NDTA  V
Sbjct: 227 SIVGIFDTLKRCALISQSAGGIGLSIHNVRATGSYIKGTGGISNGIIPMLRVYNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA+  YLE WH D+ +FL+LRKN G +  R  D+  A WIPDLFM+RV +NA
Sbjct: 287 DQGGGKRKGAIAVYLEPWHADIFDFLNLRKNHGKEEMRARDLFPALWIPDLFMQRVEENA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L+D+YG  FE  Y++YE           +K+ A  LW  +L    ETG
Sbjct: 347 DWSLFDPNEAPGLYDVYGSSFEELYQHYENDGI-----FRKKVKARELWNAILEAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S Q+++GV+ SSNLCTEI   +S++E AVCNL S+ L  + + N FD
Sbjct: 402 TPYMCYKDAANEKSNQKNIGVIRSSNLCTEIMEYTSADEVAVCNLASLALPRYVSENGFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   R L+ VID N + + + + SN  HR IGLG+ G      LL +P+ S 
Sbjct: 462 FQKLYEVTKIVTRNLNKVIDGNYYPVPETENSNFKHRPIGLGVQGLADVFLLLRMPFESE 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  +  E I + A+ +S+ELA+E GAY SFKGS   +G F  D             
Sbjct: 522 KARQLNKDIFETIYYAAMESSMELAKEEGAYESFKGSPLSEGKFQFDLWN---------- 571

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  + R  W  L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 572 VQPSDRWDWKGLRKNVMEFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L + +LWD  M + L   +GS+ NIE IP +LK+++ T +EI    +I
Sbjct: 632 EFVVVNKHLIKDLIELNLWDARMKNKLIAENGSVQNIEEIPANLKELYKTVWEIKQKTII 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL++ EP+  KL  ++  AW  GLKT  YYLR+++A    K T+
Sbjct: 692 DMAADRGAFICQSQSLNLFMAEPNMAKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTV 751

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + V            +S    + I  S  +  EC VC
Sbjct: 752 EKV-----------QSSEDKQVDISCSLDNPDECIVC 777


>gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/840 (34%), Positives = 448/840 (53%), Gaps = 60/840 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGRQESVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R    
Sbjct: 61  AETAAAMTANHPDYAILAARIAVSNLHKNT--------KKSFSETVKDMYRHVNAR---S 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + D    +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ 
Sbjct: 110 GLKSPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYFGFKTLERSYLLRVNGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     +     ++ Y+ +S   F  ++PTLFN+GT  PQLSSCFL     D
Sbjct: 170 MLMRVSVGIHKDNIDA---VLKTYHTMSQRWFTHASPTLFNAGTPRPQLSSCFLVCTKGD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    WIPDLFM+RV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEENRARDLFYGLWIPDLFMRRVQENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EFE  Y  YE      E K  + + A  LW  +L    ETG
Sbjct: 347 VWSLFCPNEAPGLADCWGEEFEKLYTRYE-----VEGKAKKVVQAQKLWFAVLEAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
           +P+I FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCNL SI L          
Sbjct: 402 NPYILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASIALPRFVRERGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          +  FD++KL        R L+ +ID+N + +E A++SN  HR IG
Sbjct: 462 MDSHPTKVIGSNGYESRYFDFEKLGEITSLVTRNLNRIIDVNYYPVEAARRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G   A  LL +P+ S EA ++  +  E I +HA+  S ELA E G Y ++ G    
Sbjct: 522 LGVQGLADAFILLGMPFDSEEAQKLNRDIFETIYYHALRTSCELAAEEGVYETYDGCPIS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   +            +SR  WD L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGLLQPDMWDVKP----------SSRWDWDALRRMIAKNGVRNSLLLAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+N+L    LW + + + + YH+GSI  I+ I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTDLGLWTQDLKNQIIYHNGSIQQIDAI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P  LKKI+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++  +W  GL
Sbjct: 692 PAGLKKIYRTVWEIKQRAIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYSWTKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVD---GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+        +         +       +  S  +  EC  C
Sbjct: 752 KTGMYYLRSRAAADAIKFTVDQSSIKTKQATPAAAIAEDLEVKLSQMVCSLENKEECMSC 811


>gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 814

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/840 (34%), Positives = 446/840 (53%), Gaps = 59/840 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G   S +  ++   V + C GL    V   I+  +  + +Y G++ S+L+  
Sbjct: 2   SMYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ +   + P+Y+ + AR  +  L +  +       +             Y  ++ +
Sbjct: 62  AAQTAASFATQHPDYSILAARVSVSNLHKMTIARFSDLVEVF-----------YNYKHPK 110

Query: 262 EGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            G  A L+ E +          L   + + RDF ++Y G + L   Y L ++G   E PQ
Sbjct: 111 TGEPASLISEEVYQIVQKHKDELDGAIVHARDFEYDYFGFKTLEKSYLLKVDGKIAERPQ 170

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRV++G+   +     R +E YN LS  +F  +TPTLFN+GT  PQ+SSCFL T+  
Sbjct: 171 LMLMRVSVGIHGDDIP---RVIETYNFLSERYFTHATPTLFNAGTNMPQMSSCFLMTMKE 227

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+  A+++KY+GG+G     VR   ++I GTNG S G++P L+V N+TA  
Sbjct: 228 DSIDGIYDTLKNCAVISKYAGGIGLAIHNVRASQSYIRGTNGSSNGIVPMLRVFNNTARY 287

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KRKG++  YLE WH DV  FLDLRKN G++  R  D+  A W+PDLFMKRV  N
Sbjct: 288 VDQGGGKRKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMKRVKDN 347

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P+E   L D +G EFE  YE YER+       V + I A  LW  +L    ET
Sbjct: 348 GTWSLLCPNECPGLADCFGDEFEALYERYEREGK-----VRQTIKAQQLWFAILDSQVET 402

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
           G P++ FKD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L         
Sbjct: 403 GTPYMLFKDHCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLVVPGQY 462

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                FD++KL        + L+ +ID N + IE+A++SN  HR IG+G+ G      +L
Sbjct: 463 GQGGSFDFEKLREVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLADCFQML 522

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            IP+ SPEA ++  +  E I F A +AS +LA   G Y S+ GS   +G    D      
Sbjct: 523 RIPFDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFDLWN--- 579

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                  +  ++R  W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y
Sbjct: 580 -------VQPSNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPFTSNMY 632

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  ++G+FTVVN  L+ EL  R +W E + + +   +GSI N+  IP ++++I  T +E
Sbjct: 633 NRRVLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIFKTVWE 692

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +++ A+ R  +I Q+QSLN+++ +P+ KKL  ++  AW  GLKT  YYLR+R   
Sbjct: 693 IPQRAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLRTRPKA 752

Query: 910 SVEKSTLKG---VDGKLNAVPVTDPNSSTHSLGIPSS-----------CTSDTE--CEVC 953
              K T+     V  K+  V + D  +S++ +  P              T D E  C  C
Sbjct: 753 DAIKFTVDQEQLVSNKMKEVKLVDKENSSNMVTPPPPGATAMKGTQGLTTEDEEDMCLSC 812


>gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 846

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/759 (36%), Positives = 432/759 (56%), Gaps = 37/759 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              S TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AEISATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +  +D  L     L + + Y+RDF++ + G + L   Y L ING   E PQ 
Sbjct: 110 RCHSPMVSKETLDIVLQNRDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHQNDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGHSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L++ +G+EFE  Y +YE++       V R + A  +W  ++    ETG
Sbjct: 347 DWSLMCPDECPGLNECWGEEFEKLYTSYEKEGR-----VKRVVKAQQVWHAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G + SSNLCTEI   +SS+E AVCNL SI L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTPECTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA+  +  VR L+ +IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFHKLAAVTKVVVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS +LA E G Y S++GS   +GV   D  G         
Sbjct: 522 PEAQLLNTQIFETIYYAALEASCQLAAELGPYESYEGSPVSKGVLQYDMWGKTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W +LK+R+   G+RNS  +A  PTA+ A I G ++SI+    N+Y +  +S
Sbjct: 576 ----TELWDWQQLKERIARHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + L  H+GS+ NI+ IP+D+K+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           I+ A+ R  +IDQ+QS+N+++ EP+  KL  ++   W  
Sbjct: 692 IKMAADRGAFIDQSQSMNIHIAEPNYGKLTSMHFYGWKQ 730


>gi|332519181|ref|ZP_08395648.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
 gi|332045029|gb|EGI81222.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
          Length = 827

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/794 (35%), Positives = 442/794 (55%), Gaps = 36/794 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V       +YDG++ S+L+    
Sbjct: 1   MFVLKRDGRKEPIMFDKITARVRKLCYGLNELVDPIKVAMRVIDGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YA++ AR  +  L +          +K     M  LY     R    G
Sbjct: 61  EQAATMTTAHPDYARLAARISVSNLHKNT--------KKTFSDVMTDLYQYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + + +    +   L + + Y RDF ++Y G + L   Y L ING   E PQ  
Sbjct: 110 KKAPLLSDEVYNVIMENKEKLDSAIIYNRDFGYDYFGFKTLERSYLLKINGEIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ + + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSIGIHINDLDA---ALETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLKVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+  FLDL+KN G +  R  D+  A W+PDLFMKRV ++A 
Sbjct: 287 QGGGKRKGSFAMYIEPWHADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQ 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L D++ +EFE  Y  YE +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPGLCDVHSEEFEALYTKYEAEGKGR-----KSIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR +GLG+ G   A   L +P+ S  
Sbjct: 462 KELFRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDA 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E + + A++AS+E AQ  G Y +++GS   +G F  +   +  +       
Sbjct: 522 AKQLNQDIFETLYYAAVTASMEEAQVDGPYQTYEGSPMSKGEFQHNLWNIQEDTL----- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W++L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 577 --SGRWDWEKLRKQVAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LW+E + +++   +GSI ++E IP D+K ++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVDLGLWNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA   +K T+ 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVTIS 754

Query: 918 GVDGKLNAVPVTDP 931
                  A PVT  
Sbjct: 755 RATK---AAPVTKE 765


>gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
 gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
          Length = 824

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/849 (34%), Positives = 450/849 (53%), Gaps = 64/849 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+
Sbjct: 1   MTSMYVIKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++  L    P+YA + AR  +  L ++         +K+    M+ LY     R 
Sbjct: 61  ELAAETAAALTSTHPDYAILAARIAVSNLHKKT--------KKSFSETMEALYNYKNPR- 111

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G +A L+ + +      +   L ++++Y+RDF F+Y G + L   Y L +NG  +E 
Sbjct: 112 --TGQEASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYFGFKTLERSYLLRMNGEVVER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+   + E    A++ Y+ +S   F  ++PTLFNSGT  PQLSSCFL  +
Sbjct: 170 PQQMLMRVAVGIHKDDIE---SAIQTYHAMSERWFTHASPTLFNSGTPRPQLSSCFLLCM 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA
Sbjct: 227 RDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRATGSYIRGTNGTSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   Y+E WH DV EFLDLRKN G +  R  D+    WIPDLFM+RV 
Sbjct: 287 RYVDQGGGKRKGAFAIYIEPWHADVFEFLDLRKNHGKEEARARDLFYGLWIPDLFMERVE 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+LF P+E  DL + +G +FE  Y  YER+         + + A  LW  +L    
Sbjct: 347 ADKEWSLFCPNEAQDLAECWGADFERLYTQYEREGRAR-----KVVRAQQLWFAILEAQV 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
           ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L       
Sbjct: 402 ETGNPYMLYKDSCNKKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRER 461

Query: 613 ------------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                             N  FD++KLA   + A R L+ +ID+N +   KA+KSN  HR
Sbjct: 462 GSQPGWESKKLVGSLDAPNRFFDFEKLAEMTQMATRNLNKIIDVNYYPHPKAQKSNMRHR 521

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G      +L +P+ SPEA E+  +  E I + A+SAS ELA+  G Y +++GS
Sbjct: 522 PIGLGVQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAALSASCELAERDGTYETYEGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              QG+   D  G+             SR  W  L+ R+   G+RNS  +A  PTA+ + 
Sbjct: 582 PVSQGILQPDMWGVKPTGVG-------SRCDWPALRDRIARHGVRNSLLVAPMPTASTSQ 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  LW   + ++L   +GS+ ++
Sbjct: 635 ILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGLWSPELKNELVAANGSVADL 694

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           + IP +LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW 
Sbjct: 695 D-IPVELKALYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWR 753

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP---------NSSTHSLGIPSSC 944
            GLKT  YYLR+++A    K T+              P         +       +  S 
Sbjct: 754 KGLKTGMYYLRTKAAADAIKFTVDQQALSRKKASNPPPTLSLPTGKFSVGAQLAAMVCSL 813

Query: 945 TSDTECEVC 953
            +   C +C
Sbjct: 814 ENKEACLMC 822


>gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio]
 gi|3914656|sp|P79732|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit; AltName: Full=Ribonucleotide reductase protein
           R1 class I
 gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio]
          Length = 794

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/821 (34%), Positives = 444/821 (54%), Gaps = 41/821 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T   K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATSTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSR- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +  +D  L     L + + Y+RDF++ + G + L   Y L ING   E PQ 
Sbjct: 112 --HSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G +I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P++   L + +G+EFE  Y  YE++         R + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNDCPGLDECWGEEFEKLYAKYEQEGR-----AKRVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S +Q++G +  SNLCTEI   +S++E AVCNL SI L  +      F
Sbjct: 402 TPYMLYKDACNRKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLAS  +  V+ L+ +IDIN + +++A+ SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I + A+ +S ELA E G Y ++ G    +G+   D            
Sbjct: 522 TEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +R LW+E M + +   +GSI  I  IPDDLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTI 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++   +  + T
Sbjct: 692 LKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDTECEVC 953
           L     K      +  +  T       +  S  +  EC +C
Sbjct: 752 LNKEKLKETQKTTSSEDEETKERNKAAMVCSLENRHECLMC 792


>gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis]
          Length = 875

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/811 (35%), Positives = 441/811 (54%), Gaps = 43/811 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    + +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGHKEPVQFDKITARVSRLCYGLDAKHIDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++          K     +  LY     R    
Sbjct: 61  AETCAYMTTIHPDYATLAARIAISNLHKQT--------TKQFSQVVDDLYQWVNPR---T 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ + ++ + +      +   L + + Y+RDF F Y G + L   Y L I+G   E PQ 
Sbjct: 110 GIHSPMISDEVYKIVMDNKDTLNSAIVYDRDFQFNYFGFKTLERSYLLRIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E   R +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D
Sbjct: 170 MIMRVAVGIHGNDIE---RVLETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   Y+E WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYIEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L D YG+EFE  YE YER+         + + A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAPGLPDAYGEEFEEMYERYEREGRGR-----KTVKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P++ +KD CN++S Q+++G + SSNLC EI   S   ETAVCNL SI L A        
Sbjct: 402 TPFMLYKDACNLKSNQKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDG 461

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               ++++KL S  +   R L+ +ID N + +E A++SN  HR I LG+ G   A  +L 
Sbjct: 462 KTQTYNFEKLHSIAKVLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLR 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA ++  E  E I   A  AS+ELA+E G Y +F GS   QG    D  G    
Sbjct: 522 LPFDSEEAKKLNIEIFETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWGKTP- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    T+   W+ LK+++K  GMRNS  +A  PTA+ + I G ++  +P   N+Y 
Sbjct: 581 ---------TALWDWNTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYS 631

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN +L+++L    +WDEAM S +   +GSI N+  IP +LK ++ T +E+
Sbjct: 632 RRVLSGEFQIVNPYLLHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWEL 691

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I+ A+ R  +IDQ+QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 692 SQKHIIDMAADRAAYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 751

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             + T+     +  A  V D +     + IP
Sbjct: 752 AIQFTIDKSVAEQAANSVVDLSKLNRPVYIP 782


>gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
 gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
          Length = 921

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/788 (34%), Positives = 428/788 (54%), Gaps = 43/788 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    + +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGRKEPVRFDKITARISKLCYGLDPSHIDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++          K     +  LY          
Sbjct: 61  AETCAYMTTVHPDYATLAARIAVSNLHKQT--------TKQFSQVISDLYHYVNPAN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           GV + ++ + + +    +   L + + Y+RDF F Y G + L   Y L ING   E PQ 
Sbjct: 110 GVHSPMISDEIFNIVMTNKDELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     E  K A+E YNL+S  +F+ ++PTLFN+GT HPQ++SCFL  +  D
Sbjct: 170 LIMRVSLGIHG---EDIKSAIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+ +L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDSLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP E   L D+YG+EFE  YE YE++         + I A  LW  +L    ETG
Sbjct: 347 EWTLFSPSEAPGLADVYGEEFEKLYERYEQEGRGR-----KTIRAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S Q+++GV+ SSNLC EI   S  +ETA CNL SI L +        
Sbjct: 402 TPFMLYKDACNEKSNQKNLGVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADG 461

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               + + KL    +   R L+ VID N + + +AK+SN  HR I LG+ G      +L 
Sbjct: 462 KEQWYSFAKLHEVAKAITRNLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLR 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ SPEA  +  +  E I   A+  S ELA+  G YS+++GS   QG+   D       
Sbjct: 522 LPFESPEAKILNQQIFETIYHGALEQSCELAKIHGTYSTYEGSPISQGLLQFDLWEK--- 578

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N +    W+ L++ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y 
Sbjct: 579 -------NPSELWDWEPLRQGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYS 631

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN +L+ +L    +WDE+M   +   +GSI NI  IP ++K ++ T +EI
Sbjct: 632 RRVLSGEFQIVNPYLLKDLVDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEI 691

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ A+ R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 692 SQRHVLDMAADRAVFIDQSHSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 751

Query: 911 VEKSTLKG 918
             + T+  
Sbjct: 752 AIQFTIDK 759


>gi|28422346|gb|AAH46846.1| RRM1 protein [Xenopus laevis]
          Length = 760

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/781 (35%), Positives = 438/781 (56%), Gaps = 38/781 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSK- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++    +D  L     L + + Y+RDF++ + G + L   Y L ING   E PQ 
Sbjct: 112 --HSPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKTDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV +FLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNL 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L +++G +FE  YE YER+         + + A  +W  ++    ETG
Sbjct: 347 DWSLMCPHECPGLEEVWGDKFEELYEKYEREGR-----TRKVVKAQQVWHAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  +  +  E I + A+ +S ELA+E G Y +++G    +G+   D   +        
Sbjct: 522 EKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 576 ----TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L ++ LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +
Sbjct: 632 GEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + T
Sbjct: 692 ITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT 751

Query: 916 L 916
           L
Sbjct: 752 L 752


>gi|298207003|ref|YP_003715182.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
          Length = 840

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/806 (35%), Positives = 450/806 (55%), Gaps = 34/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL + V    V     + +YDG++ SDL+    
Sbjct: 1   MDVLKRDGRREPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDGVTTSDLDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YAK+ AR  +  L ++         +K     M  LY     R    G
Sbjct: 61  ETAASMTVSHPDYAKLAARISVSNLHKDT--------KKTFSEVMTDLYEYVNPR---TG 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + +      +   L + + Y RD+ ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKAPLLSDEVYKVIQDNKDRLDSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + +    A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSVGIHLDDLDA---AIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV ++  
Sbjct: 287 QGGGKRKGSFAIYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGN 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  +L +++ +EF+  Y  YE      E K  + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPNLFNVHSEEFDELYLKYE-----SENKGRKTIKARVLWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N  FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S E
Sbjct: 462 KELFRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  E  E + F A++AS+ELA E G YSS++GS   +G F  +  G+  E       
Sbjct: 522 AKTLNQEIFETLYFAAVTASMELAIEEGPYSSYEGSPISKGEFQYNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  L+++V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWAGLRQKVLENGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LW+  + + +   +GSI NI+ IP DLK+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVNLGLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T++
Sbjct: 695 MSRHRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVE 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K    P     ++  +  +  +
Sbjct: 755 KA-KKAEPQPQQQEVAAKAAETLQQA 779


>gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe 972h-]
 gi|1350600|sp|P36602|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe]
          Length = 811

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/838 (34%), Positives = 451/838 (53%), Gaps = 58/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +    
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPK---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ + + D  +     L + + Y+RDF + + G + L   Y L I+G   E PQ 
Sbjct: 110 DKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MIMRVAVGIHGEDIEA---AIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P ++V N+TA  V
Sbjct: 227 SIEGIYDTLKMCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA  AYLE WH DV +FL+LRK  G++  R  +M  A WIPDLFM+RV +N 
Sbjct: 287 DQGGNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WT F P+E   L D++G EF   YE YE++         R + A  +W  +L    ETG
Sbjct: 347 QWTFFCPNEAPGLADVWGDEFVALYEKYEKENRGR-----RSLPAQKVWYAILQSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           +P++ +KD CN +S Q++VG +  SNLCTEI   SS +E AVCNL S+ L     + +++
Sbjct: 402 NPFMLYKDSCNRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYN 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S 
Sbjct: 462 FQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESA 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             
Sbjct: 522 GAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWN---------- 571

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +N T    W ELK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 572 VNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I
Sbjct: 632 EFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVI 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+
Sbjct: 692 DYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTV 751

Query: 917 ---------------------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                K    +++A P  +     +   +  S  +   CE+C
Sbjct: 752 DPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
 gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
          Length = 841

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 454/866 (52%), Gaps = 84/866 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG     +  ++   + +   GL  +     +V  +    +Y G++ S+L+  
Sbjct: 2   AMYVVKRDGRQEPVHFDKITARINKLAYGLNQEFCDPVLVAQKVAVGVYKGVTTSELDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ ++  K P+YA++ AR  +  L +  L        K+    M+ +Y     R   
Sbjct: 62  AAETAASMTSKHPDYAQLAARIAVSNLHKNTL--------KSFSETMKVMYEHVNKRN-- 111

Query: 262 EGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            G  + LL + + +    +     +++ Y+RDF ++Y G + L   Y L ++G  +E PQ
Sbjct: 112 -GKWSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQ 170

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+     +  ++A++ Y++LS      ++PTLFNSGT  PQLSSCFL  +  
Sbjct: 171 HLLMRVAIGIH----KDVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKE 226

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA  
Sbjct: 227 DSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARY 286

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    W  DLFMKRV  N
Sbjct: 287 VDQGGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEAN 346

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF P+E   L D +G+EFE  YE YE +         + + A  LW  +L    ET
Sbjct: 347 GEWTLFCPNEAPGLADCWGEEFEALYEKYEAEGKGK-----KTVKAQQLWFAILESQVET 401

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-- 614
           G+P++ FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L      N  
Sbjct: 402 GNPYMLFKDACNRKSNQQNLGTIRSSNLCTEIVEYTSPEETAVCNLASIALPRFVIENNP 461

Query: 615 ---------------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                                 FD+DKLA   R   R L+ +ID+N + +E A++SN  H
Sbjct: 462 QSPTGRTEAKKLRGSIGAANRYFDHDKLAEITRKVTRNLNRIIDVNYYPVETARRSNMKH 521

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G      LL +P+ SPEA ++  E  E I F A++ S ++A+  G Y S+ G
Sbjct: 522 RPIGLGVQGLADVFILLGMPFDSPEAKKLNAEIFETIYFAALTESNDIAKRDGTYESYPG 581

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S    GV   D  GL         M    R  W  L+ ++   G+RNS  +A  PTA+ +
Sbjct: 582 SPVSNGVLQPDMWGLT-------EMPGGDRHDWTGLRTKISEHGVRNSLLVAPMPTASTS 634

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD ++ ++L  ++GS+ +
Sbjct: 635 QILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTEMGLWDPSLKNELIANNGSVQS 694

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           ++ IPD+LK+I+ T +EI    L++ A+ R  +IDQ+QS N+++ + +  KL  ++  AW
Sbjct: 695 LD-IPDNLKEIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAW 753

Query: 894 LMGLKT-TYYLRSRSATSVEKSTLK-------------------------GVDGKLNAVP 927
             GLKT  YYLRSR+A    K T+                          G   K   V 
Sbjct: 754 KKGLKTGMYYLRSRAAADAVKFTVDPNSVKAKNASSKKEVVGDKENQPANGEGAKKGPVD 813

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
                 +  +  I  S  +  EC +C
Sbjct: 814 PDMEEEALMAAKIACSLANKDECVMC 839



 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 31/177 (17%)

Query: 28  GVQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            + V+KR+G      FD  KI+  I K    +  +     +  Q +   + +   T  L 
Sbjct: 2   AMYVVKRDGRQEPVHFD--KITARINKLAYGLNQEFCDPVLVAQKVAVGVYKGVTTSELD 59

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +                 M S H         Y +  + +  +  H  +    +  +
Sbjct: 60  ELAAETAAS------------MTSKHPD-------YAQLAARIAVSNLHKNTLKSFSETM 100

Query: 146 KIM-----MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           K+M       +G      +  +  I++          S+IV    +   Y G    +
Sbjct: 101 KVMYEHVNKRNGKWSPLLADDVYEIIK---ENADRFDSEIVYDRDFDYDYFGYKTLE 154


>gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
 gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
          Length = 825

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/804 (36%), Positives = 446/804 (55%), Gaps = 35/804 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MYVLKRDGRKEPMMFDKITARVRKLCYGLNELVDPIKVSMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             S T+    P++AK+ AR  +  L +          +K+    M+ LY     R    G
Sbjct: 61  EISATMTTTHPDFAKLAARISVSNLHKNT--------KKSFADTMKDLYEYVNPRN---G 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            K+ LL + +      +  +L + + Y RDF ++Y G + L   Y L ING   E PQ  
Sbjct: 110 KKSPLLSDEVFKVISENAAFLDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + E     VE Y L+S   F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSVGIHLDDLEA---VVETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IDGIYDTLKQTAQISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ EFLDL+KN G +  R  D+  A WIPDLFM+RV  N  
Sbjct: 287 QGGGKRKGSFAIYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEE 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  DL   + + FE  Y  YE +         + + A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPDLFKHHSEVFETMYLKYEAENKGR-----KTVKARDLWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   R L+ VID N + +++A+ SN  HR IGLG+ G   A  +L +P+ S  
Sbjct: 462 KELFRVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDA 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  E  E + F A++AS+E+A+E G YSS++GS   +G F  +  G+  E       
Sbjct: 522 AKALNQEIFETLYFAAVTASMEMAKEEGPYSSYEGSPISEGEFQYNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  WD+L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWDKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LW+E++  +L   +GSI +I+ IP D+K+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVHLGLWNESLKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TL 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIP 941
               K   VPV+    +      P
Sbjct: 755 NTKKK--EVPVSVAADAEIVAATP 776


>gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis]
 gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis]
          Length = 818

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/841 (34%), Positives = 440/841 (52%), Gaps = 48/841 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
            KS +    KL ++  DG     +  ++   V++ C  L    V    +  +    +Y G
Sbjct: 2   MKSKSLKPEKLYVIKRDGRKEEIHFDKITSRVQKLCYNLNMDFVDPVSITLKVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      + +L     +YA + AR  +  L +E         +K      + LY
Sbjct: 62  VTTQELDNLAAEIAASLTTHHADYALLAARIAVSNLHKET--------RKVFSDVFEDLY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   E        H +++  +   L + + Y+RDF + Y G + L   Y L ING 
Sbjct: 114 KHVNRETNETSPMVSEYHYNIVANNSDRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+   + +    A+E YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 IAERPQHMLMRVAIGIHGDDID---SAIETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF  +++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMASDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSISGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   L D++G+EFE  Y  YE++  +      R + A +LW  ++
Sbjct: 351 KRVEANEDWSLMCPHKCPGLQDVWGEEFEKLYVKYEKEGRQN-----RIVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L   
Sbjct: 406 ESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMF 465

Query: 611 F-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             A   +D+ KL    +   + L+ +IDIN + + +AKKSN  HR IG+G+ GF  AL L
Sbjct: 466 VTAEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGFADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I + A+ AS EL+++ G Y ++ GS   +GV   D     
Sbjct: 526 MRFPYESEEASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQYDMWNRS 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNESFEPYTSNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP++++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEEIRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKG----------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
            +  + T+                     ++     +D         +  S  +   C  
Sbjct: 756 ANAIQFTVDKNVSVVEINAQNFVDQHASMEMGDTNESDIERERRMAQMICSLENKDACLS 815

Query: 953 C 953
           C
Sbjct: 816 C 816


>gi|297268640|ref|XP_002799729.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 762

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/789 (36%), Positives = 448/789 (56%), Gaps = 37/789 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYER 289
                   +K     M+ LY          G  + ++ +S +D  L     L + + Y+R
Sbjct: 61  --------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDR 109

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS  
Sbjct: 110 DFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSER 166

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R
Sbjct: 167 WFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIR 226

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+K
Sbjct: 227 ATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKK 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+
Sbjct: 287 NTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           Q       V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTE
Sbjct: 347 QGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A
Sbjct: 402 IVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEA 461

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G
Sbjct: 462 CLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQG 521

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D   +            T    W+ LK+ +   G+RNS  +A 
Sbjct: 522 PYETYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAP 571

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +  
Sbjct: 572 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL 
Sbjct: 632 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 691

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            ++   W  GLKT  YYLR+R A +  + TL K        +   +     ++  +  S 
Sbjct: 692 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSL 751

Query: 945 TSDTECEVC 953
            +  EC +C
Sbjct: 752 ENRDECLMC 760


>gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 816

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/843 (34%), Positives = 446/843 (52%), Gaps = 63/843 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   + +   GL        +V  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRDGRQEPVHFDKITARINKLAYGLNQDHCDPVLVAQKVASGVYKGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA++ AR  +  L +  L        K+    M+ ++     R    
Sbjct: 61  AETAASMTSKHPDYAQLAARIAVSNLHKNTL--------KSFSETMKVMHEHVNKRN--- 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + LL + + +    +      ++ Y+RDF ++Y G + L   Y L ++G  +E PQ 
Sbjct: 110 GKWSPLLADDVYEIIKANAATFDAEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     +  ++A++ Y++LS      ++PTLFNSGT  PQLSSCFL  +  D
Sbjct: 170 LLMRVAIGIH----KDVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKED 225

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA  V
Sbjct: 226 SIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYV 285

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    W  DLFM+RV  N 
Sbjct: 286 DQGGGKRKGAFAVYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMRRVESNG 345

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D +G EFE  Y +YE Q         + I A  LW  +L    ETG
Sbjct: 346 DWTLMCPNECPGLADSWGAEFEKLYTSYEEQGKGK-----KTIKAQQLWFAILEAQVETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
           +P++ FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L          
Sbjct: 401 NPYMLFKDACNSKSNQQNLGTIRSSNLCTEIVEFTSPEETAVCNLASIALPRFVVEENPA 460

Query: 615 --------------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                                FD+ KLA   R   R L+ +ID+N + +E A++SN  HR
Sbjct: 461 SPTGRTEAKKLRGSLGAASRTFDHAKLAEITRKVTRNLNRIIDVNYYPVETARRSNMRHR 520

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G      LL + + SPEA ++  E  E I F A++ S  +A   G Y ++ GS
Sbjct: 521 PIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNAIAAVDGHYETYPGS 580

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D  G+         M    R  W  L+ ++ T G+RNS  +A  PTA+ + 
Sbjct: 581 PVSKGILQPDMWGVT-------EMPGGDRHDWAALRAKIATSGVRNSLLVAPMPTASTSQ 633

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++  +P   N+Y +  +SG+FTVVN  L+N+L +  LWD  + ++L  ++GS+  +
Sbjct: 634 ILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLNDLTELGLWDPKLKNELIANNGSVQGL 693

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           + IPD LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ + +  KL  ++  AW 
Sbjct: 694 D-IPDHLKAIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWK 752

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDTEC 950
            GLKT  YYLRSR+A    K T+    GK NA    DP+       +  +  S  +  EC
Sbjct: 753 KGLKTGMYYLRSRAAADAVKFTVDQA-GKGNAQKSADPDMEEEARMAAKLACSLANKDEC 811

Query: 951 EVC 953
            +C
Sbjct: 812 VMC 814



 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 29  VQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + V+KR+G      FD  KI+  I K    +        +  Q +   + +   T  L  
Sbjct: 1   MYVVKRDGRQEPVHFD--KITARINKLAYGLNQDHCDPVLVAQKVASGVYKGVTTSELDE 58

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +                 M S H         Y +  + +  +  H  +    +  +K
Sbjct: 59  LAAETAAS------------MTSKHPD-------YAQLAARIAVSNLHKNTLKSFSETMK 99

Query: 147 IM-----MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +M       +G      +  +  I++   +      ++IV    +   Y G    +
Sbjct: 100 VMHEHVNKRNGKWSPLLADDVYEIIK---ANAATFDAEIVYDRDFDYDYFGYKTLE 152


>gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group]
 gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa
           Japonica Group]
          Length = 810

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/837 (34%), Positives = 449/837 (53%), Gaps = 57/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   ++    GL  +     +V  +    +Y G++ S L    
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  +        K+    ++ +Y  Y  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAISNLHKTTM--------KSFSETIKVMYMHYDER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSIGIHKDDIE---SAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMNDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EF+  Y+ YER+         + +SA ALW  +L    ETG
Sbjct: 347 NWSLFCPNEAPGLADCWGDEFQNLYKKYEREGK-----AKKVVSAQALWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIGLPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA       R L+ +ID N + +E AK+SN  HR IG
Sbjct: 462 MESHPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ S EA ++  +  E I +HA+ AS E+A + G Y ++ GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W +L++ +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYRTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR+R+A    K T+     K       + +  +    +  S  +  EC  C
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 808


>gi|332211479|ref|XP_003254846.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Nomascus leucogenys]
          Length = 762

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/789 (36%), Positives = 446/789 (56%), Gaps = 37/789 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYER 289
                   +K     M+ LY          G  + ++ +S +D  L     L + + Y+R
Sbjct: 61  --------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDR 109

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS  
Sbjct: 110 DFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSER 166

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R
Sbjct: 167 WFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIR 226

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+K
Sbjct: 227 ATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKK 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+
Sbjct: 287 NTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           Q       V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTE
Sbjct: 347 QGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A
Sbjct: 402 IVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEA 461

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G
Sbjct: 462 CLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQG 521

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A 
Sbjct: 522 PYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAP 571

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +  
Sbjct: 572 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GSI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL 
Sbjct: 632 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLT 691

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            ++   W  GLKT  YYLR+R A +  + TL K        V   +     ++  +  S 
Sbjct: 692 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 751

Query: 945 TSDTECEVC 953
            +  EC +C
Sbjct: 752 ENRDECLMC 760


>gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
 gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
          Length = 793

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/819 (33%), Positives = 445/819 (54%), Gaps = 38/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   + + C GL    V +  +  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRDGRREDVKFDKITARITKLCYGLNPDYVDAIKISQKVVAGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+++K+ AR  +  L +           K     ++  +      + + 
Sbjct: 61  AETAAYQSTQHPDFSKLAARIAVSNLHKNT--------NKVFSDNIEVFHKN---AHEKT 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + +  +     L + + ++RDF ++Y G + L   Y   +NG  +E PQ 
Sbjct: 110 GAAAPLIADDVYEIVMQHKDELNSAIIHDRDFEYDYFGFKTLERGYLFRVNGKVVERPQQ 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             +RVA+G+   +      A+E Y L+S   F  +TPTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MILRVALGIHKSDI---TSALETYELMSQKFFTHATPTLFNAGTPRPQLSSCFLLAMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G     +R   ++I GTNG S G+IP L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQCACISKWAGGIGISMHNIRATNSYIRGTNGSSNGIIPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH DV EFLDLRKN G++  R  D+  A W+PDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L++ +G EFE  YE YE +         + I+A  LW  +L    ETG
Sbjct: 347 KWSLFCPNEAPGLYECWGDEFETLYEKYETEGRAR-----KTINAQQLWFAILDAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD  N +S QQ++G + SSNLC E+   +S +E AVCNL S+ L     +  FD
Sbjct: 402 VPFMLYKDAANRKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVEDAVFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y KL   ++   R L+ VID+N + + +A+KSN  HR IG+G+ G   A  L++ P+ SP
Sbjct: 462 YRKLYEVVKVITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A E+     E I F A+  S+E+A E G Y +F+GS   +G+F  D  G+  +      
Sbjct: 522 QAQELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQ------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W  LK  V   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  ++G
Sbjct: 576 ---SGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT+VN  L+ EL +  +W   + + +    GS+  I+ IP+D+K+ + T +EI    ++
Sbjct: 633 EFTIVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVL 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + ++ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YY+R R      + T+
Sbjct: 693 DLSADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTV 752

Query: 917 --KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +G+D +      T    +  +  +  +   + EC VC
Sbjct: 753 DKQGIDLQRAKEEATKTAPTPAAETVTRAGDDEDECLVC 791


>gi|332835621|ref|XP_003312921.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Pan
           troglodytes]
          Length = 762

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/789 (36%), Positives = 447/789 (56%), Gaps = 37/789 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYER 289
                   +K     M+ LY          G  + ++ +S +D  L     L + + Y+R
Sbjct: 61  --------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDR 109

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS  
Sbjct: 110 DFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSER 166

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R
Sbjct: 167 WFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIR 226

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+K
Sbjct: 227 ATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKK 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+
Sbjct: 287 NTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           Q       V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTE
Sbjct: 347 QGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A
Sbjct: 402 IVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEA 461

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G
Sbjct: 462 CLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQG 521

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A 
Sbjct: 522 PYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAP 571

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +  
Sbjct: 572 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL 
Sbjct: 632 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 691

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            ++   W  GLKT  YYLR+R A +  + TL K        V   +     ++  +  S 
Sbjct: 692 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 751

Query: 945 TSDTECEVC 953
            +  EC +C
Sbjct: 752 ENRDECLMC 760


>gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens]
          Length = 762

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/789 (36%), Positives = 447/789 (56%), Gaps = 37/789 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYER 289
                   +K     M+ LY          G  + ++ +S +D  L     L + + Y+R
Sbjct: 61  --------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDR 109

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS  
Sbjct: 110 DFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSER 166

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R
Sbjct: 167 WFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIR 226

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+K
Sbjct: 227 ATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKK 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+
Sbjct: 287 NTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           Q       V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTE
Sbjct: 347 QGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A
Sbjct: 402 IVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEA 461

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G
Sbjct: 462 CLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQG 521

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A 
Sbjct: 522 PYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAP 571

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +  
Sbjct: 572 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL 
Sbjct: 632 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 691

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            ++   W  GLKT  YYLR+R A +  + TL K        V   +     ++  +  S 
Sbjct: 692 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 751

Query: 945 TSDTECEVC 953
            +  EC +C
Sbjct: 752 ENRDECLMC 760


>gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi]
 gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi]
          Length = 821

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/837 (35%), Positives = 436/837 (52%), Gaps = 51/837 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
             KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+
Sbjct: 9   PSKLYVIKRDGRQEEIHFDKITSRIQKLCYNLNMDFVDPVSITLKVINGLYCGVTTQELD 68

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                 + +L  +  +YA + AR  +  L +E         +K      + LY       
Sbjct: 69  NLAAEIAASLTTQHADYALLAARIAVSNLHKET--------RKVFSDVFEDLYKHINKET 120

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E        H +++      L + + Y+RDF + Y G + L   Y L IN    E PQ 
Sbjct: 121 NEPSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINHKIAERPQH 180

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPD 378
             MRV++G+   + +    AVE YNLLS  +F  ++PTLF + T  PQ+SSCFL T V D
Sbjct: 181 MLMRVSIGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQMSSCFLLTMVSD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V
Sbjct: 238 SIEGIFKSVEQCAMISKAAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYV 297

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KR GA   YLE WH D+ EF+DL+KNTG +  R  ++  A WIPDLFMKRV  N 
Sbjct: 298 DQGGGKRPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPDLFMKRVEANE 357

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P +   L D++G +FE  Y  YE++         R I A  LW  ++    ETG
Sbjct: 358 DWSLMCPHKCPGLQDVWGDDFEKLYVQYEKEGKAN-----RVIKAQTLWFAIIEAQVETG 412

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L      +  +
Sbjct: 413 TPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTSDKTY 472

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ GF  AL L+  PY S
Sbjct: 473 DFKKLKEVTKTVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADALILMRHPYES 532

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I F A+ AS ELAQ+ G Y ++ GS   +G+   D  G         
Sbjct: 533 EEAALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMWGKTP------ 586

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W+ LK  +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +S
Sbjct: 587 ----TDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYTSNIYTRRVLS 642

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP +++ ++ T +EI     
Sbjct: 643 GEFQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYKTVWEISVKTT 702

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T
Sbjct: 703 IKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFT 762

Query: 916 L-KGVDGKLN------------------AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + KG   K                     V  +D         +  S  +   C  C
Sbjct: 763 VAKGSPVKQTNGLHNTSFVEHNDSMENGNVSESDLERERKMADVVCSLENKDACLSC 819


>gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/822 (34%), Positives = 445/822 (54%), Gaps = 45/822 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITRRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   + +  P+++ + AR  +  L +             TH +      E +     
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHK------------NTHEKFSDTVTELYQITDG 109

Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            G  A L+ E + +    +   L   + YERDF ++Y G + L   Y L    + S IE 
Sbjct: 110 RGRHAPLVSEEVYNIVMANAEKLDKAIDYERDFDYDYFGFKTLERSYLLKRPSDKSCIER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+   + +    A+E Y+L+S+  F  +TPTLFNSGT HPQ+SSCFL ++
Sbjct: 170 PQHMIMRVAVGIHGDDVDA---AIETYDLMSTRVFTHATPTLFNSGTPHPQMSSCFLLSM 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA
Sbjct: 227 KGDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKG+   YLE WH DV EFLDL+KN G + +R  D+  A WIPDLFMKRV 
Sbjct: 287 RYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVM 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTLF P+E   L D YG EFE  YE YE+          + + A +LW K+L    
Sbjct: 347 SNGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDGIGR-----KTVKAQSLWFKILESQQ 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG P++ +KD  N +S Q+++G +  SNLC EI   +S +E AVCNL SI L       
Sbjct: 402 ETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKK 461

Query: 615 Q--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              +D+D+L    +   R L+ VID N + + +A++SN  HR IG+G+ G   A  L+  
Sbjct: 462 TRTYDFDRLHRVTKVVTRNLNKVIDRNYYPVPEARRSNMRHRPIGIGVQGLADAFLLMRF 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY SPEA+++ +E  E I   A  AS+ELA++ G Y +F+GS   +G+   D   +  + 
Sbjct: 522 PYESPEALKLNNEIFETIYHAACEASMELAKKDGPYETFEGSPASEGILQFDMWDVTPD- 580

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W+ LK+ +K  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+
Sbjct: 581 --------SGRWDWNSLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F  VN  LV++L +  LW++ +   +    GS+  +E IP ++++++ T +EI 
Sbjct: 633 RVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGSVQGVEEIPKEVQELYKTVWEIK 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A   
Sbjct: 693 QKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADA 752

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            + TL     K+       P +S            +  C  C
Sbjct: 753 IQFTLDA--KKITMESPLKPRTSPLKPQYVQ--EDEETCIAC 790


>gi|86132509|ref|ZP_01051103.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
 gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
          Length = 874

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/808 (36%), Positives = 448/808 (55%), Gaps = 36/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C  L D V    +     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRQEPVMFDKITARVKKLCYELSDFVDPVKISMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YAK+ AR  +  L +          +K+    M  LY     R    G
Sbjct: 61  ETAASMTTSHPDYAKLAARISVSNLHKNT--------KKSFSEVMTDLYQYVNPR---TG 109

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA ++ + +      +   L + + Y RDF ++Y G + L   Y L ING   E PQ  
Sbjct: 110 KKAPMVADEVYKVIMDNKDELDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+ L + E    A E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+  D 
Sbjct: 170 LMRVSIGIHLNDLEA---AKETYMLMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     +R  GA+I GTNG S G++P LKV NDTA  V+
Sbjct: 227 IEGIYDTLKQTAKISQSAGGIGLSIHNIRAKGAYIGGTNGTSNGIVPMLKVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WI DLFMKRV ++  
Sbjct: 287 QGGGKRKGSFAIYMEPWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGK 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  DL +++G+EFE  Y  YE++         R I A  LW K++    ETG 
Sbjct: 347 WTLMCPNECPDLFNVHGEEFEALYTKYEQEERGR-----RTIKARELWEKIMESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N  FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVKNGAFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L +    A + L+ VID N + + +A+ SN  HR IGLG+ G       L +P+ S E
Sbjct: 462 QELYNITVRATKNLNKVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  E  E + F A++AS ++A+  G Y SF+GS   QG F  +   +  E       
Sbjct: 522 AKKLNQEIFETLYFAAVTASKDMAKVEGPYQSFEGSPISQGEFQYNLWNIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L   +LW++ + + +   +GSI  I+ IP DLK+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVALNLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA   +K TL 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTL- 753

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K    PVT P +    +   ++ T
Sbjct: 754 --SAKKKEAPVTAPTAPKQQVAARAAQT 779


>gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
 gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
          Length = 827

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/851 (34%), Positives = 448/851 (52%), Gaps = 68/851 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MYVLKRDGKNEPMMFDKITARVRKLCYGLNERVDPVKVSLRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P++AK+ AR  +  L +          +K+    M+ LY     R    G
Sbjct: 61  EIAATMTTTHPDFAKLAARISVSNLHKNT--------KKSFSETMEDLYKYVNPRN---G 109

Query: 264 VKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             + LL + +      +   L + + Y RDF ++Y G + L   Y L +NG  +E PQ  
Sbjct: 110 KSSPLLSDEVYQAIMDNAELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+          A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSVGIH---PTDMDSAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     VR  G++I GTNG S GV+P LKV NDTA  V+
Sbjct: 227 IDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV  NA 
Sbjct: 287 QGGGKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAE 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E  +L + + + F+  Y  YE +         + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPNECPNLFNNHSEAFDELYLKYESEGKGR-----KTIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     +  FD+
Sbjct: 402 PYMLYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDH 461

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    +   + L+ VID N + +++A+ SN  HR IGLG+ G   A  +L +P+ S E
Sbjct: 462 KELFKVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDE 521

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++ +E  E + F A++AS+E A+  G Y S+KGS   QG F  +  G+  E       
Sbjct: 522 AKKLNEEIFETLYFAALTASMEEAKADGPYQSYKGSPISQGEFQHNLWGIKDE------- 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W +L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 575 ELSGRWDWAKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L    LWDE +  +L   +GS+ +I+ IP D+K+++ T +E+    +I+
Sbjct: 635 FIVVNKHLLEDLVALGLWDEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            + +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL 
Sbjct: 695 MSRQRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLD 754

Query: 918 GVDGK----------------------LNAVPVTDPNSSTHSLGIPSSCTS--------- 946
               K                         VP  + N        P +            
Sbjct: 755 NTAKKDVPVSVAAEAEVAAATPVKAVQPEKVPAKEQNVQLEEEVKPLTPDEMRALIAKAK 814

Query: 947 ----DTECEVC 953
               D +C +C
Sbjct: 815 EGQADDDCLMC 825


>gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 883

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/819 (34%), Positives = 433/819 (52%), Gaps = 43/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +   C GL    +    V       +Y+G++  +L+   
Sbjct: 1   MYVIKRDGREEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTYELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      K   +  H+              E 
Sbjct: 61  AETAAYMTTVHPDYAVLAARLAVSNLHKQTTKVFSKVIDELHHYVNP-----------EN 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A L+ + + D    +   L + + Y+RDF + Y G + L   Y L + G   E PQ 
Sbjct: 110 NKPAPLISKDVYDTVMANKDELNSAIVYDRDFNYNYFGFKTLERSYLLRMKGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   +    K A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 MVMRVAIGIHGNDI---KAAIESYNLMSQRYFTHASPTLFNAGTPRPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA+  YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +NA
Sbjct: 287 DQGGNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP E   L ++YG+EFE  Y  Y  +         + I A  LW  +L    ETG
Sbjct: 347 DWTLFSPSEAPGLDEVYGEEFEALYNRYVEEGRGK-----KTIKAQKLWYSILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN++S Q+++G + SSNLC EI   S+ +ETAVCNL SI L A    ++  
Sbjct: 402 TPFMLYKDACNLKSNQRNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDE 461

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL    +   R L+ VID N + +++AK SN  HR I LG+ G   A  LL 
Sbjct: 462 KQSFYNFKKLHDIAKVVTRNLNRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLR 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IP+ S EA E+     E +   A+ AS ELAQE GAY +FKGS   +G+   D       
Sbjct: 522 IPFESKEAKELNIHIFETLYHGALEASCELAQEEGAYQTFKGSPASEGILQFDMWNRKP- 580

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    T    WD LK  +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 581 ---------TDLWDWDTLKSNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQ 631

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN +L+ +L    +W+E+M   L   +GSI N+  +P +LK ++ T +EI
Sbjct: 632 RRVLSGEFQIVNPYLLRDLVDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEI 691

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I+ ++ R  +IDQ+ S+N+++  P+  KL  ++   W  GLKT  YYLR+++A++
Sbjct: 692 SQKTIIDMSADRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASA 751

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             + T+     +     V D  +      +P       +
Sbjct: 752 AIQFTIDKKVAEKAGESVADIANLNRPHYVPRKLNISED 790


>gi|296217188|ref|XP_002754896.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Callithrix jacchus]
          Length = 762

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/789 (36%), Positives = 447/789 (56%), Gaps = 37/789 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYER 289
                   +K     M+ LY          G  + ++ +S +D  L     L + + Y+R
Sbjct: 61  --------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDR 109

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           DF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS  
Sbjct: 110 DFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSER 166

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R
Sbjct: 167 WFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIR 226

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+K
Sbjct: 227 ATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKK 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+
Sbjct: 287 NTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTE
Sbjct: 347 Q-----RRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           I   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A
Sbjct: 402 IVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEA 461

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G
Sbjct: 462 CLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHG 521

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A 
Sbjct: 522 PYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAP 571

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +  
Sbjct: 572 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            +GSI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL 
Sbjct: 632 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLT 691

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            ++   W  GLKT  YYLR+R A +  + TL K        V   +     ++  +  S 
Sbjct: 692 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSL 751

Query: 945 TSDTECEVC 953
            +  EC +C
Sbjct: 752 ENRDECLMC 760


>gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
 gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
          Length = 881

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/797 (34%), Positives = 420/797 (52%), Gaps = 31/797 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +             ++   +++ C GL +  V       +    +Y G++  +L+     
Sbjct: 4   VFKRGARKERVQFDKITARIQKLCYGLNENFVDPIEFTQKVVAGVYHGVTTVELDNLAAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L  K P+YA + AR  +  L +E         +K     ++ LY     +      
Sbjct: 64  TAAYLTTKHPDYAVLAARIAVSNLHKET--------KKNFSQVIKDLYEYVNPKNRRPAG 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                   ++  +   L + + Y RDF+F + G + L   Y L +NG   E PQ   MRV
Sbjct: 116 MISQEIYEIVRENAEALDSAIIYNRDFSFNFFGFKTLERSYLLRLNGRVAERPQHMIMRV 175

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+G+  ++ +   R VE YNL+S  +F  ++PTLFN+GT HPQLSSCFL  +  D + GI
Sbjct: 176 AVGIHGRDID---RVVETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGI 232

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L+  AM++K +GG+G     +R  G++I GTNG S G++P L+  + TA  V+QG  
Sbjct: 233 YDTLKNCAMISKTAGGIGLSIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGN 292

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   Y+E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  N  W+LF
Sbjct: 293 KRPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLF 352

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+E + L +++  EFE  YE YE++         + I A  LW  +L    ETG P++ 
Sbjct: 353 CPNEAAGLGEVHSAEFEALYEKYEKEGRAR-----KSIPAQKLWYAILEAQIETGGPFMV 407

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N +S Q+++G + SSNLCTEI   SS EETAVCNL S+ L    +N ++D+ KL 
Sbjct: 408 YKDHANSKSNQKNLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFISNGKYDFQKLH 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +     L+ +ID+N + I +A+ SN  HR IG+G+ G       L +P+ SP A E+
Sbjct: 468 DVTKVVAYNLNRIIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I   A+ AS ELA+  G Y ++ GS    G    D  G+            T 
Sbjct: 528 NIQIFETIYHGALEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTP----------TG 577

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV
Sbjct: 578 LWDWTSLKEKIARTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVV 637

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             +L+ EL    LWD+ M + +  H+GS+ NI  IPDD+K I+ T +EI    +++ A+ 
Sbjct: 638 CPWLLRELVDLGLWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAAD 697

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           R  +I Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A S  + T+     
Sbjct: 698 RGAFICQSQSLNVHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLL 757

Query: 922 KLNAVPVTDPNSSTHSL 938
           K      TD        
Sbjct: 758 KEVKQQKTDAAKVKAQA 774


>gi|260061081|ref|YP_003194161.1| putative ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
 gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
          Length = 812

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/835 (34%), Positives = 451/835 (54%), Gaps = 66/835 (7%)

Query: 159 SKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
             ++   V + C GL D V    V     + +YDG++ S+L+      + TL    P+YA
Sbjct: 2   FDKITARVRKLCYGLSDLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTTHPDYA 61

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF- 276
           K+ AR  +  L +          +K+    M+ LY     R    G KA L+ + + +  
Sbjct: 62  KLAARISVSNLHKNT--------KKSFSETMKDLYEYVNPR---TGKKAPLVADDVFEVI 110

Query: 277 --DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
                 L + + Y RDF ++Y G + L   Y L +NG  +E PQ   MRV++G+ L + +
Sbjct: 111 QKHADTLDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDDLD 170

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393
             +   E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D + GI+  L++ A +
Sbjct: 171 AVR---ETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKI 227

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYL 452
           ++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YL
Sbjct: 228 SQSAGGIGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYL 287

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ +FL+L+KN G +  R  D+  A WI DLFMKRV  +A WTL  P+E   L+ 
Sbjct: 288 EPWHADIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYT 347

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            + +EFE  Y  YE++         + I A  LW K+L    ETG P++ +KD  N +S 
Sbjct: 348 THSEEFEELYLKYEKEGKGR-----KTIKARELWEKILESQIETGTPYMLYKDAANRKSN 402

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G + SSNLCTEI   ++ +E AVCNL SI L     N +FD+ +L    +   + L
Sbjct: 403 QKNLGTIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNL 462

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID N + I++A+ SN  HR IGLG+ G      LL +P+ S EA ++  E  E + +
Sbjct: 463 NRVIDRNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYY 522

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS+E+A+E G YSS++GS   QG F  +  G+  +         + R  W++L+K 
Sbjct: 523 AAATASMEMAKEEGPYSSYEGSPISQGQFQHNLWGIEDK-------ELSGRWDWEKLRKS 575

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L  
Sbjct: 576 IKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVS 635

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW+E M  +L   +GSI +I+ IPD++K+++ T +E+    +I+ + +R  +IDQ+QS
Sbjct: 636 LGLWNENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQS 695

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN------- 924
           LNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL     K+        
Sbjct: 696 LNLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTKKKVEVPEAVVT 755

Query: 925 ---------------AVPVTDPNSSTHSLGI-----------PSSCTSDTECEVC 953
                            PV +       L              +S  +D +C +C
Sbjct: 756 EEGVAPEKAKNLKVSTTPVKEQPVDAEPLSAEEMKALVAQAKAASGQTDDDCLMC 810


>gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 810

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/837 (34%), Positives = 450/837 (53%), Gaps = 57/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +     Y G++ + L+   
Sbjct: 1   MYVIKRDGHQETVHFDKITARLKKLSYGLNSEYCDPVLVAQKVCSGFYKGVTTTQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R    
Sbjct: 61  AETAAAMTTNHPDYAILAARVAVSNLHKNT--------KKSFSETIKLMYSHINKR---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L I+G  +E PQ 
Sbjct: 110 GQKASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYFGFKTLERSYLLKIDGKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     +  + AV+ Y+L++   F  +TPTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAIGIH---KDDVESAVKTYHLMAQRWFTHATPTLFNAGTPQPQLSSCFLGCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L+E A+++K +GG+G     VR  G+ I GTNG+S G++P L+V NDTA  V
Sbjct: 227 SIEGIFDTLKECAVISKVAGGIGLSVHNVRATGSFICGTNGESNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G + RR  D+  A WIPDLFM+RV  + 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEERRARDLFYALWIPDLFMERVRGDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G+EFE  Y  YE        +  + I A  LW ++L    ETG
Sbjct: 347 SWSLFCPNEAPGLADCWGEEFEKLYTFYE-----DGDRAKKVIPARKLWFEILNSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            P++ FKD CN +S QQ++G + SSNLCTE+   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASIALPRFVRERGVP 461

Query: 615 -----------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+ KLA    T    L+ +IDIN + ++ A++SN  HR +G
Sbjct: 462 IGSHSSKLVGSRDSKTRYFDFAKLAEITVTITANLNKIIDINYYPVDTARRSNLRHRPMG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ S EA ++  +  E I +HA+ +S ELA   G Y ++KGS   
Sbjct: 522 IGVQGLADTFILLGMPFDSLEAQQLNKDIFETIYYHALKSSSELAAIDGPYETYKGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+  +D  G++           + R  W+ L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQMDMWGVIP----------SDRWDWNVLREMISKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y +GS+  +  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEIGLWSHALKNKIIYENGSVAKVPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+ LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P   KL  ++  AW  GL
Sbjct: 692 PEQLKAIYKTVWEIKQKTLVDMAVARGCYIDQSQSLNIHMDQPDLGKLTSLHFYAWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR+R+A    K T+     K   V  T+    T    +  S  +  EC  C
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTSVLKHENVNSTNDYVDTDMAQMVCSLRNREECMAC 808


>gi|221125333|ref|XP_002156212.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 2 [Hydra magnipapillata]
          Length = 809

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/837 (33%), Positives = 442/837 (52%), Gaps = 45/837 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYK 187
                   D  +   + ++   G     +  ++   +++ C GL    +S   +  +  +
Sbjct: 3   DQNHDQNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIR 62

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            MY G++  +L+T     + ++  K P+YA + AR  +  L +E         +K     
Sbjct: 63  GMYPGITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKET--------KKKFSDT 114

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDR 304
           +  LY        E  +   ++ E +      +   L   +   RDF + Y G + L   
Sbjct: 115 IADLYNYISP---EINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERS 171

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNL+S   F  ++PTLFNSGT 
Sbjct: 172 YLLKINGKTAERPQHMLMRVSVGIHGEDLDA---AIETYNLMSEKWFTHASPTLFNSGTP 228

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQ+SSCFL  +  D + GIF  +++ A+++K++GG+G     +R  G++I GTNG S G
Sbjct: 229 RPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNG 288

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           +IP L+V N+TA  V+QG  KR G++  YLE WH D+ +FLDL+KNTG + +R  D+   
Sbjct: 289 IIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFG 348

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+PDLFM+RV +   W+L  P E   L D YG+EFE  Y+ YE +         ++I A
Sbjct: 349 LWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYESEGR-----YRKQIPA 403

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SS+E AVCNL
Sbjct: 404 QKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNL 463

Query: 603 GSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            SI++ +           +D+ KL    +   R L+ VID N + + +A+ SN  HR IG
Sbjct: 464 ASISVNSFVTVNSETTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIG 523

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  L+  P+ S EA  +  +  E I + A+ AS ELA++ G Y S++GS   
Sbjct: 524 IGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPIS 583

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   +            T+   W ELK ++   G+RNS  +A  PTA+ A I G
Sbjct: 584 KGILQYDMWNVTP----------TNLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILG 633

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++SI+P   N+Y +  +SG+F VVN  L+ +L   +LWD+ M + L  H+GS+ NI+ I
Sbjct: 634 NNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEI 693

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P D+K ++ TA+EI    LI  A+ R  +IDQ+QS N++L EPS   L  I+   W  GL
Sbjct: 694 PADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGL 753

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR++ A +  + T+   D            +      +  S  +  +C  C
Sbjct: 754 KTGMYYLRTKPAANAIQFTV---DQNKLKQSNNLKQTDDDLKSLICSLENKDQCMSC 807


>gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis]
 gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis]
          Length = 821

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/838 (34%), Positives = 440/838 (52%), Gaps = 57/838 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLFVVKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVSITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCR 258
               S  L     +YA + AR  +  L +E   V + V++   K  + E     P     
Sbjct: 71  AAEISAGLTCNHADYAILAARIAVSNLHKETKKVFSDVFEDLFKNINRETNTASPMV--- 127

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
                      H +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ
Sbjct: 128 --------SEFHYNIVKNNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQ 179

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + +    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  
Sbjct: 180 HMLMRVALGIHGDDIDA---AVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMNS 236

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF ++++ A+++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  
Sbjct: 237 DSIEGIFKSVEQCALISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARY 296

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KR GA   YLE WH DV EFLDL++NTG +  R  D+  A WIPDLFMKRV  N
Sbjct: 297 VDQGGGKRPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEAN 356

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P +   L D++G++FE  Y  YE++         R + A ALW  ++    ET
Sbjct: 357 ESWSLMCPHKCPGLQDVWGEKFEELYVKYEQEGRAN-----RTVEAQALWFAIIESQVET 411

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQ 615
           G+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         
Sbjct: 412 GNPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTPEKT 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L+  PY 
Sbjct: 472 YDFKKLKEVTKTVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYE 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I F A+ AS ELA+E G Y +++GS   +G+   D           
Sbjct: 532 SEEAGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYDMWDKTP----- 586

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +
Sbjct: 587 -----TNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVL 641

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L + DLWD+ M + +    GSI +IE IP  ++ ++ T +EI    
Sbjct: 642 SGEFQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKS 701

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
            I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + 
Sbjct: 702 TIKMAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQF 761

Query: 915 TLKG-------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+                     +D   N     + +   H   +  S  +   C  C
Sbjct: 762 TVDKKQAASALNDLNGSFNKSTLLDESTNNSHHIESDRERHMAEMVCSLENKDACLSC 819


>gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 817

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/843 (34%), Positives = 450/843 (53%), Gaps = 59/843 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199
              L ++  DG        ++   +++   GL  +     IV  +    ++ G++  +L+
Sbjct: 1   MGGLYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVIVAQKVCMGVFAGVTTKELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ ++  K P+YA++ AR  +  L +          +K+    M  +Y     R 
Sbjct: 61  ELAAETAASMTSKHPDYAQLAARIAVSNLHK--------TTKKSFSETMTQMYEHVNERN 112

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G  + LL + + +    +   L  ++ Y+RDF ++Y G + L   Y L I+G  +E 
Sbjct: 113 ---GKWSPLLADDVYEIIKANAERLDAEIVYDRDFEYDYFGYKTLERSYLLRIDGKVVER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+  ++ EK   AV+ Y++LS      ++PTLFN+GT  PQLSSCFL  +
Sbjct: 170 PQHLLMRVSIGIHKEDIEK---AVDTYHMLSERWMTHASPTLFNAGTPRPQLSSCFLIAM 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA
Sbjct: 227 KEDSIEGIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   Y+E WH D+ ++LDLRKN G +  R  D+    W  DLFMKRV 
Sbjct: 287 RYVDQGGGKRKGAFAIYIEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVE 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTL  P+E   L D +G+EFE  Y+ YE +         + I A  LW  +L    
Sbjct: 347 ANGDWTLMCPNECPGLADCWGEEFETLYQKYEAEGKGK-----KTIKAQQLWFAILESQV 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L      N
Sbjct: 402 ETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPEETAVCNLASIALPRFVIEN 461

Query: 615 -----------------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                                   FD+DKL    R   R L+ +ID+N + +E AK+SN 
Sbjct: 462 NPSSPTGRTEVKKLVGSLKAKERYFDHDKLFEITRKVTRNLNRIIDVNYYPVETAKRSNM 521

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR IGLG+ G      LL + + SPEA ++  E  E I F A++ S  LA   G Y+++
Sbjct: 522 RHRPIGLGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNALAVVEGPYTTY 581

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS   +G+   D  GL         M    R  W  L+  +   G+RNS  +A  PTA+
Sbjct: 582 EGSPVSKGILQPDMWGLTQ-------MPGGDRHDWAGLRAAIAQHGVRNSLLVAPMPTAS 634

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD  + + L  ++GS+
Sbjct: 635 TSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDPELKNSLIANNGSV 694

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            ++E IP++LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  
Sbjct: 695 ADLE-IPENLKAIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFY 753

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           AW  GLKT  YYLRSR+A    K T+     ++  +   +  +   +  +  S T+  +C
Sbjct: 754 AWKKGLKTGMYYLRSRAAADAIKFTVDVKQKQVTKMSEEEKEAYL-AAKLQCSLTNKDDC 812

Query: 951 EVC 953
            +C
Sbjct: 813 VMC 815



 Score = 44.7 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 31/179 (17%)

Query: 26  IKGVQVIKRNGGVTS--FDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + G+ V+KR+G      FD  KI+  I K    +  +     I  Q +   +     T+ 
Sbjct: 1   MGGLYVVKRDGREEPVAFD--KITARIKKLAYGLSQEFCDPVIVAQKVCMGVFAGVTTKE 58

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           L    +                 M S H         Y +  + +  +  H  +    + 
Sbjct: 59  LDELAAETAAS------------MTSKHPD-------YAQLAARIAVSNLHKTTKKSFSE 99

Query: 144 KL-----KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
            +      +   +G      +  +  I++     L    ++IV    ++  Y G    +
Sbjct: 100 TMTQMYEHVNERNGKWSPLLADDVYEIIKANAERL---DAEIVYDRDFEYDYFGYKTLE 155


>gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 777

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/814 (34%), Positives = 447/814 (54%), Gaps = 44/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   + +   GL   +     +  +  + +YD ++ ++L+   
Sbjct: 1   MFVIKRNGKKEAVHFDKITARIHKLIYGLSISEKDVIEIAKKVIQGIYDNITTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++       P+++ + AR  +  L +  L +  K  Q    +E      +     I E
Sbjct: 61  AETAAAQTTIHPDFSVLAARIAVSNLHKNTLKSFSKTAQLL--YEYTDPITQTHAPLISE 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            +   +        +   L + + Y+RD+ F+Y G + L   Y +  NG   E PQ  FM
Sbjct: 119 EIYKIIRK------NADELDSSVIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  + A+E YNL+S   F+ +TPTLFN+GT  PQ+SSCFL ++  D + 
Sbjct: 173 RVALGI---YKEDIQAAIETYNLMSEKWFIHATPTLFNAGTPKPQMSSCFLLSMTEDSIA 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A++++ +GG+G     +R  G++I GT G S G+IP L+V NDTA  V+QG
Sbjct: 230 GIFDTLKRCALISQSAGGIGVSIHNIRSTGSYIKGTGGISNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA+  Y+E WH+D+ +F+D+RKN G +  R  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GGKRKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARDLFPALWIPDLFMQRVEADQMWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L+++YG++F   Y  YE +         ++I A  LW  +L    ETG P+
Sbjct: 350 LFDPNEAQGLYEVYGEKFNELYTTYENEGK-----FRKQIKARELWTAILEAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S Q+++G + SSNLCTEI   ++++E AVCNL S+ L  + ++  FD+ K
Sbjct: 405 MCYKDAVNEKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYVSSGGFDFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ +ID N + I + K SN  HR IGLG+ G      LL +P+ SPEA 
Sbjct: 465 LYEVTKIVTRNLNKIIDGNYYPIPETKTSNDRHRPIGLGVQGLADVFLLLRLPFESPEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I F ++ AS++LA+E+GAYSSF GS   +G F  D   ++           
Sbjct: 525 RLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLSEGKFQFDLWQVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W++L++ V T G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 SDRWDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFV 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN FL+ +L +  LW+  M + L   +GS+ NI  IP +LK+++ T +EI    +I+ A
Sbjct: 635 VVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL++ EP+  KL  ++  AW  GLKT  YYLR+++A    K T+   
Sbjct: 695 AERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTV--- 751

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     D         +  S  +  EC  C
Sbjct: 752 ----------DTQLLLGQSQVACSLDNPEECLAC 775


>gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
 gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
          Length = 810

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/837 (33%), Positives = 444/837 (53%), Gaps = 57/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +     GL  +     +V  +    +Y G++  ++    
Sbjct: 1   MYVVKRDGRQESVHFDKITARLTRLSYGLSAEHCDPVLVAQKVCAGVYKGITTGEIGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  +T+            ++ LY  Y  R    
Sbjct: 61  AETAAAMTTSHPDYASLAARIAVSNLHKNTMTS--------FSATVKALYTHYDER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+ + +      +   L  ++ Y+RDF ++Y G + L   Y L I G   E PQ 
Sbjct: 110 GLMAPLIADDVFTIIMKNTARLECEINYDRDFDYDYFGFKTLQRSYLLKIGGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLSECAAISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDL+KN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHPDIFEFLDLKKNHGKEENRARDLFYALWVPDLFMERVQHNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G EF+  Y+ YER+         + ++A ALW  +L    ETG
Sbjct: 347 QWSLFCPSEAPGLADCWGDEFQNLYQKYEREGK-----AKKVVAAQALWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPSETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +IDI+ + IE A++SN  HR IG
Sbjct: 462 IESHPAKLVGSSGSKNRYFDFDKLAEITSIVTCNLNKIIDISYYPIENARRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I +H++ AS ELA + G Y ++ GS   
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYAGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           +SR  W  +++ +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SSRWNWSAIREMISQVGLRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  +
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLSEMGVWSPVLKNKIIYEDGSVQKITEV 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A  R  +IDQ+QSLN+++++P+  KL  ++   W  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMEQPNSGKLTSLHFHGWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR+R+A    K T+     K       + ++      +  S  +  EC  C
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTTLLKDKQPTSEEEDAQVKMAQVACSLNNREECLAC 808


>gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
 gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
          Length = 847

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/831 (35%), Positives = 439/831 (52%), Gaps = 47/831 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++   G     +  ++   ++    GL + V    V       MY G+   +L+   
Sbjct: 41  TMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELA 100

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+++ + AR   + L +     V +  +    ++     P      I +
Sbjct: 101 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGRP---ASLISK 157

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   +L           L  ++ Y RDF ++Y G + L   Y L IN   IE PQ   M
Sbjct: 158 EVYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLM 211

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + 
Sbjct: 212 RVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIE 268

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 269 GIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQG 328

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N  WT
Sbjct: 329 GGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWT 388

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG P+
Sbjct: 389 LMCPNECPGLSETWGEEFEKLYTKYEEENMGK-----KTVLAQDLWFAILQSQIETGVPY 443

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         +F++
Sbjct: 444 MLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNF 503

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL  PY S  
Sbjct: 504 KKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDA 563

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+     E + + A+  SVELA   G Y S++GS   QG+   D      + +     
Sbjct: 564 AKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKY---- 619

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WDELK +++  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +SG+
Sbjct: 620 -----WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 674

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    +I+
Sbjct: 675 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 734

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K T+ 
Sbjct: 735 MAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 794

Query: 917 ----------KGVDGKLNAVPVTDPNSSTHSLGIPSSC----TSDTECEVC 953
                     K  DG      V+    ST S    + C     +D +C +C
Sbjct: 795 THVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 845


>gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax
           SaI-1]
 gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative
           [Plasmodium vivax]
          Length = 848

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/836 (35%), Positives = 447/836 (53%), Gaps = 56/836 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++   G     +  ++   ++    GL + V    V       MY G+   +L+   
Sbjct: 41  TMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELA 100

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE- 261
             +   +    P+++ + AR   + L +     + +               E   +Y + 
Sbjct: 101 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDIGEVA-------------EALYKYTDV 147

Query: 262 EGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            G  A L+ + + +F +     L  ++ Y RDF ++Y G + L   Y L ING  IE PQ
Sbjct: 148 RGRPASLISKEVYEFMIEHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGKIIERPQ 207

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  
Sbjct: 208 HLLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLCMKS 264

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  
Sbjct: 265 DSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARY 324

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N
Sbjct: 325 VDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKEN 384

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTL  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ET
Sbjct: 385 KNWTLMCPNECPGLSESWGEEFEKLYTKYEEENMGK-----KTVLAQDLWFAILQSQIET 439

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANN 614
           G P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         
Sbjct: 440 GVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDVEKR 499

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           +F++ KL    +   R LD +I+ N + +E+AK+SN  HR IG+G+ G      LL  PY
Sbjct: 500 EFNFKKLYEITKIITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGVQGLADTFMLLRYPY 559

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+   D   +  + + 
Sbjct: 560 ESDSAKELNKRIFETMYYGALEMSMELAQLYGPYETYQGSPASQGILQFDMWNVKVDKKY 619

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WDELK ++K  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  
Sbjct: 620 ---------WDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRV 670

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP DLK+++ T +EI   
Sbjct: 671 LSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTVWEIKQK 730

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K
Sbjct: 731 NIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIK 790

Query: 914 STL-----KGVDGKLNAVPV-----------TDPNSSTHSLGIPSSCTSDTECEVC 953
            T+     K      NA PV           +  ++ T ++  P    +D +C +C
Sbjct: 791 FTVDTQVAKNAAKMKNAEPVAITREVSRETISTDSTVTQNVVCPLRRNNDDQCLMC 846


>gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 881

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/795 (35%), Positives = 431/795 (54%), Gaps = 35/795 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDPTHVEPVAITQKVIAGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+    P+YA + AR  +  L ++  T  Y    K  +  +      +     +E
Sbjct: 61  AETAATMTTIHPDYAVLAARIAVSNLHKQT-TKQYSAVSKILYEYINPETKLHSPMISKE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  HE         L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 120 TYDIIQEHE-------DELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++     R +E YNL+S  +F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAIGIHGRDIP---RVIETYNLMSQRYFTHGSPCLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EF+++RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D YG+EFE  Y  Y  +         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADCYGEEFEELYNKYVAEGRGR-----QTIKAQKLWYSILECQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----F 616
           + +KD CN +S Q+++G++ SSNLC EI   SS EE AVCNL SI L +    ++    +
Sbjct: 405 MLYKDACNAKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ VID N + + +A+KSN  HR I LG+ G   A  +L I + S
Sbjct: 465 NFEKLHDVTKVVTRNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELAQE GAY +++GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAQEEGAYETYQGSPASQGLLQFDLWNRKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WDELK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TELWDWDELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ AS R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVTD 930
           +     +     V D
Sbjct: 755 IDKKIAEQAGNTVAD 769


>gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
 gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
          Length = 861

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/790 (34%), Positives = 426/790 (53%), Gaps = 41/790 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVNKRDGRKEPVRFDKITARVQRLCYGLDPNHVDAVAITQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K      + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQT--------TKQYSSVSKELYDYINPK---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ + ++ +   D  L     L + + Y+RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GLHSPMISKETYDIILKHTDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + EK    +E YNL+S   F   +PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVAIGIHGDDIEK---VIESYNLMSQRLFTHGSPTLFNAGTPSPQMSSCFLVAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIDGIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QNA
Sbjct: 287 DQGGNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNA 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP+E   L D+YG EFE        +    E +    I A  LW  +L    ETG
Sbjct: 347 DWTLFSPNEAPGLADVYGDEFEEL-----YERYERENRGRSTIKAQKLWYSILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++G++ SSNLC EI   SS EE AVCNL SI L +    +   
Sbjct: 402 TPFMLYKDACNKKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSS 461

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             ++++KL    +   + L+ +ID N + + +A++SN  +R I LG+ G       L +P
Sbjct: 462 LWYNFEKLHEVTKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S +A E+  +  E I   A+ +S+ELAQ  G Y S++GS   +G+   D         
Sbjct: 522 FDSQQARELNIQIFETIYHAAVESSIELAQIEGPYESYEGSPASKGLLQYDLWDRKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 -------TELWDWDTLKQNLSKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L    +W++AM +++  ++GS+  +  +PD++K ++ T +EI  
Sbjct: 632 VLAGEFQIVNPYLLRDLVDLGIWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  
Sbjct: 692 KHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAI 751

Query: 913 KSTLKGVDGK 922
           + T+     K
Sbjct: 752 QFTVDKNSAK 761


>gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 874

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/808 (34%), Positives = 427/808 (52%), Gaps = 37/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    +    V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++  T ++ +     +H +     ++     EE
Sbjct: 61  AETAAYMTTVHPDYATLAARLAISNLHKQT-TKLFSQVVDDLYHYINPENSKHAPLVSEE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + H+         L + + Y+RDF F Y G + L   Y L + G   E PQ   M
Sbjct: 120 VYNIVMEHK-------DELNSAIVYDRDFQFNYFGFKTLERSYLLRMKGEVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D L 
Sbjct: 173 RVAIGIHGEDIEA---AIETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSLE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIFDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA+  YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L ++YG+EFE  Y  Y  +         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLEEVYGEEFEALYNRYVAEGRGR-----KTIKAQKLWYSILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NN 614
           + +KD CN +S  +++G + SSNLC EI   S+ +ETAVCNL SI L A         + 
Sbjct: 405 MLYKDACNTKSNHKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+ SN  HR I LG+ G      LL IP+
Sbjct: 465 TYNFKKLHEISKVVTRNLNKVIDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA E+     E +   A+ AS ELA++ G Y S+  S   QGV   D          
Sbjct: 525 ESKEAKELNTHIFETMYHAALEASCELAEKEGYYESYPNSPVSQGVLQYDMWNRKP---- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    W  LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 581 ------SDLWDWATLKEQIKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +WDE+M   L   +GSI N+  IP +LK ++ T +EI   
Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+ S+N+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 TIIDMATDRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            T+        A    D  +       P
Sbjct: 755 FTIDKSVADQAAKSTADLENLKRPTYYP 782


>gi|221125331|ref|XP_002156185.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Hydra magnipapillata]
          Length = 821

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/849 (33%), Positives = 442/849 (52%), Gaps = 57/849 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYK 187
                   D  +   + ++   G     +  ++   +++ C GL    +S   +  +  +
Sbjct: 3   DQNHDQNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIR 62

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            MY G++  +L+T     + ++  K P+YA + AR  +  L +E         +K     
Sbjct: 63  GMYPGITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKET--------KKKFSDT 114

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDR 304
           +  LY        E  +   ++ E +      +   L   +   RDF + Y G + L   
Sbjct: 115 IADLYNYISP---EINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERS 171

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNL+S   F  ++PTLFNSGT 
Sbjct: 172 YLLKINGKTAERPQHMLMRVSVGIHGEDLDA---AIETYNLMSEKWFTHASPTLFNSGTP 228

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQ+SSCFL  +  D + GIF  +++ A+++K++GG+G     +R  G++I GTNG S G
Sbjct: 229 RPQMSSCFLLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNG 288

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           +IP L+V N+TA  V+QG  KR G++  YLE WH D+ +FLDL+KNTG + +R  D+   
Sbjct: 289 IIPMLRVFNNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFG 348

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            W+PDLFM+RV +   W+L  P E   L D YG+EFE  Y+ YE +         ++I A
Sbjct: 349 LWVPDLFMRRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYESEGR-----YRKQIPA 403

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SS+E AVCNL
Sbjct: 404 QKLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNL 463

Query: 603 GSINLLAHF-----------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            SI++ +                       +D+ KL    +   R L+ VID N + + +
Sbjct: 464 ASISVNSFVTVNSETVTLPSGETKLVKTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPE 523

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS ELA++ 
Sbjct: 524 ARNSNMRHRPIGIGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKD 583

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y S++GS   +G+   D   +            T+   W ELK ++   G+RNS  +A
Sbjct: 584 GTYESYQGSPISKGILQYDMWNVTP----------TNLWNWAELKAKIALHGVRNSLLVA 633

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L   +LWD+ M + L 
Sbjct: 634 PMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLI 693

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            H+GS+ NI+ IP D+K ++ TA+EI    LI  A+ R  +IDQ+QS N++L EPS   L
Sbjct: 694 AHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTL 753

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
             I+   W  GLKT  YYLR++ A +  + T+   D            +      +  S 
Sbjct: 754 TAIHFYGWKKGLKTGMYYLRTKPAANAIQFTV---DQNKLKQSNNLKQTDDDLKSLICSL 810

Query: 945 TSDTECEVC 953
            +  +C  C
Sbjct: 811 ENKDQCMSC 819


>gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe]
          Length = 811

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/838 (34%), Positives = 449/838 (53%), Gaps = 58/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +    
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPK---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ + + D  +     L + + Y+RDF + + G + L   Y L I+G   E PQ 
Sbjct: 110 DKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MIMRVAVGIHGEDIEA---AIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G     +R  G++I GTNG S G++P ++V N+TA  V
Sbjct: 227 SIEGIYDTLKMCAMISKTAGGIGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA  AYLE WH DV +FL+LRK  G++  R   M  A WIPDLFM+RV +N 
Sbjct: 287 DQGGNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WT F P+E   L D++G EF   YE YE++         R + A  +W  +L    ETG
Sbjct: 347 QWTFFCPNEAPGLADVWGDEFVALYEKYEKENRGR-----RSLPAQKVWYAILQSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           +P++ +KD CN +S Q++VG + SSNLCTEI   SS +E AVCNL S+ L     + +++
Sbjct: 402 NPFMLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYN 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S 
Sbjct: 462 FQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESA 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             
Sbjct: 522 GAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN---------- 571

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +N T    W E K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 572 VNPTDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I
Sbjct: 632 EFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVI 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+
Sbjct: 692 DYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTV 751

Query: 917 ---------------------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                K    +++A P  +     +   +  S  +   CE+C
Sbjct: 752 DPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like,
           partial [Saccoglossus kowalevskii]
          Length = 759

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/783 (36%), Positives = 431/783 (55%), Gaps = 34/783 (4%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +       +Y G++  +L+T    ++ ++  K P+YA + AR  +  L +E       
Sbjct: 1   AAITMRVITGVYPGVTTVELDTLAAETAASMTTKHPDYAVLAARIAVSNLHKET------ 54

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             +K     M  L+     R  +           ++  +   L + + Y+RDF + + G 
Sbjct: 55  --KKTFSAVMDDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGF 112

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ING   E PQ   MRV++G+   + E    A+E YNLLS   F  ++PTL
Sbjct: 113 KTLERSYLLKINGKVAERPQHMLMRVSVGIHHNDIEG---AIETYNLLSEKWFTHASPTL 169

Query: 359 FNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FN+GT  PQLSSCFL T+  D + GI+  L++ A+++K +GG+G +   +R  G++I GT
Sbjct: 170 FNAGTCRPQLSSCFLLTMKDDSIEGIYDTLKQCALISKSAGGIGVNVHCIRASGSYIAGT 229

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           NG S G++P L+V N+TA  V+QG  KR GA   YLE WH D+ +FLD +KNTG + +R 
Sbjct: 230 NGSSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRA 289

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            D+  A WIPDLFMKRV  N  WTL  P+E   LHD++GKEFE  YE YER     E K 
Sbjct: 290 RDLFYALWIPDLFMKRVETNQDWTLMCPNECPGLHDVWGKEFEDLYEKYER-----ENKG 344

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW  ++    ETG P++ +KD CN +S  Q++G +  SNLCTEI   SS +E
Sbjct: 345 TKTIKAQLLWYAIIEAQTETGTPYMLYKDACNRKSNHQNLGTIKCSNLCTEIVEFSSPDE 404

Query: 597 TAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            AVCNL SI +      +  +D+ KL       VR L+ +ID+N + +E+A+ SN  HR 
Sbjct: 405 VAVCNLASIAVNMFVKPDKTYDFKKLEQVTGVIVRNLNKIIDVNFYPVEEARNSNMRHRP 464

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK--- 712
           IG+G+ G   A  L+  P+ S EA+ +  +  E I + A+ AS ELA+  GAY S+K   
Sbjct: 465 IGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYKFGD 524

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G    +G+   D   +            T    WD LKK + T G+RNS  +A  PTA+ 
Sbjct: 525 GCPVSKGILQYDMWDVTP----------TDLHDWDALKKDIATHGLRNSLLLAPMPTAST 574

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G ++S++P   N+Y +  +SG+F VVN  L+ +L +  LW++ M + L  ++GSI 
Sbjct: 575 AQILGNNESVEPYTTNIYSRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQ 634

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           +I+ IPD +KK++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++  A
Sbjct: 635 SIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFA 694

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           W  GLKT  YYLR+R A    K T+ K        V         +   +  S  +  +C
Sbjct: 695 WKQGLKTGMYYLRTRPAADPIKFTVNKTSLKPTTNVEAAAEKEEENQAAMVCSLQNKDDC 754

Query: 951 EVC 953
            +C
Sbjct: 755 LMC 757


>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
 gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti]
 gi|108873131|gb|EAT37356.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
          Length = 844

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/862 (33%), Positives = 438/862 (50%), Gaps = 78/862 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           K+ +   DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+  
Sbjct: 7   KMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYSGVTTQELDNL 66

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ T+  +  +YA + AR  +  L +E         +K     M  LY        +
Sbjct: 67  AAETAATMTTEHADYAILAARLAVSNLHKET--------KKHFSDVMHDLYMMENEHLKK 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H  ++      L + + Y+RDF + Y G + L   Y L I G  +E PQ   
Sbjct: 119 RTPMISEFHYKVIMDHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHML 178

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+  ++ +    A+E YNLLS  +F  ++PT+F + T  PQLSSCFL T+  D +
Sbjct: 179 MRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDSI 235

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 236 EGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVDQ 295

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  W
Sbjct: 296 GGNKRPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            L  P E   L D +G+EFE  Y +YE +         RK+ A  LW  ++    ETG P
Sbjct: 356 CLMCPHECPGLSDTWGEEFEKLYTSYEAEGR-----YIRKVKAQDLWFAIIESQVETGVP 410

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           ++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      +  +D+
Sbjct: 411 YMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYDF 470

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    + A + L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S E
Sbjct: 471 QKLKEVAKIATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEE 530

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I + A+ AS ELA++ G Y ++ G    +GV   D              
Sbjct: 531 AQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWNKEP-------- 582

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 583 --TDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGE 640

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  L+ +L + DLWD+ M + +  ++GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 641 FQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIK 700

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+ 
Sbjct: 701 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVD 760

Query: 918 -----------------GVDGKLNAVPVTD-----------------------------P 931
                            G   K+N    T                               
Sbjct: 761 KTRLNQSNRINNSDTVNGSPSKMNGATSTPSKMNGTATSSASPVKASSDNSQQQLNGSHA 820

Query: 932 NSSTHSLGIPSSCTSDTECEVC 953
             +     +  S  +  +C +C
Sbjct: 821 ERNRRMAEMVCSLENKEDCMMC 842


>gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo
           laibachii Nc14]
          Length = 782

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/817 (33%), Positives = 434/817 (53%), Gaps = 45/817 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   + + C  L  + V    +  +    +Y G++ S+L+   
Sbjct: 1   MYVIKRDGRKEVVKFDKITARITKLCYNLNTEYVDPVQISQKVIAGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+++K+ AR  +  L +           K     +Q  Y     ++   
Sbjct: 61  AETAAYCSTQHPDFSKLAARIAISNLHKNT--------NKVFSENIQLFYEN---KHDTT 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            V A L+ E +    +     L + +  +RDF ++Y G + L   Y L +NG   E PQ 
Sbjct: 110 KVPAPLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYFGFKTLEKSYLLRVNGKVCERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     E  +  +E Y  +S   F  +TPTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MIMRVAVGIH---KENLEAVLETYECMSQKFFTHATPTLFNAGTPRPQLSSCFLLSMQDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G   + +R   ++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIDGIYDTLKQCACISKWAGGIGVSISNIRCTNSYIRGTNGSSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+ EFL+LRKN G++  R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYALWIPDLFMKRVEDNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L++ +G EF+  Y  YE           + + A  LW  +L    ETG
Sbjct: 347 EWSLFCPNEAPRLYETWGNEFDALYLKYESM-----NIARKTVKAQQLWFAILDSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S QQ++G + SSNLC EI   S S+E AVCNL S+ L       +F 
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNLASVALSKFVYQKEFQ 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + L+ +IDIN + I +A+ SN  HR IG+G+ G      L+ +P+ S 
Sbjct: 462 FTKLYEITKIVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQGLADTFLLMGLPFESK 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A ++  E  E + F A+ AS+ELA+E G Y S+ GS   +G F  D   +  +      
Sbjct: 522 AARDLNKEIFETMYFAAMEASMELARELGPYESYSGSPVSKGTFQFDMWQVTPD------ 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W  LK++V   G+RNS  +A  PTA+ A I G  +SI+P   N++ +  ++G
Sbjct: 576 ---SGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESIEPFTSNMFNRRVLAG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT+VN +L+ EL + +LW   + + +    GS+ NI  IP ++K+ + T +EI    ++
Sbjct: 633 EFTIVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVKEKYKTVWEIKQKSIL 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YYLR+R      + T+
Sbjct: 693 DMAADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMYYLRTRPRADAIQFTV 752

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +  +S+   L        + EC VC
Sbjct: 753 D---------QKSLDDSALAKLSQTQDVDEEEECLVC 780


>gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 863

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/813 (33%), Positives = 432/813 (53%), Gaps = 39/813 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + + +  +  +    +Y G+   +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHIDAAAITQKVISGVYQGVGTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSMVISDLYHYVNPKN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ +   +  +     L + + Y+RDF + + G + L   Y L ING+  E PQ 
Sbjct: 110 NKPAPMISKEHYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRINGTVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRVA+G+  ++ EK   A+E Y+L+S  +F  ++PTLFN+ T  PQL+SCFL  +  D
Sbjct: 170 LLMRVAVGIHGEDIEK---AIETYHLMSQKYFTHASPTLFNAATPQPQLASCFLVDMSAD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D+YG+EF+  Y  YE++         + I A  LW  +L    ETG
Sbjct: 347 DWTLFCPNEAPGLADVYGEEFDALYAKYEQEGRGR-----KTIKAQKLWYAILEAQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
           +P++ +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      A  +
Sbjct: 402 NPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGE 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL   ++  V  L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ 
Sbjct: 462 YDFGKLHEVVQVLVHNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFD 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I   A++AS ++A++ G Y ++ GS   QG+   D           
Sbjct: 522 SPEARQLNIQIFETIYHGALTASSDIAKKLGPYETYPGSPVSQGILQYDMWDRTP----- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 577 -----TDLWDWASLKAKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 631

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    
Sbjct: 632 AGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRN 691

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  + 
Sbjct: 692 ILQMAADRGAYIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQF 751

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           T+      +    V          G  +     
Sbjct: 752 TVDQEQLLVEDTNVARSKKRVGGTGASAYSAIP 784


>gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae]
 gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB]
          Length = 885

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/813 (32%), Positives = 422/813 (51%), Gaps = 38/813 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L
Sbjct: 13  TPTQMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVEL 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++   
Sbjct: 73  DNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPM 131

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +E     +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ
Sbjct: 132 ISDEIYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  
Sbjct: 185 HLVMRVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  
Sbjct: 242 DSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARY 301

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++
Sbjct: 302 VDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQED 361

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ET
Sbjct: 362 GPWTLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTET 415

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611
           G P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A       
Sbjct: 416 GTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSED 475

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L
Sbjct: 476 GKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMML 535

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D      
Sbjct: 536 RLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP 595

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                          W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y
Sbjct: 596 ----------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +E
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +  + T+        A  +   +     + +P 
Sbjct: 766 AAIQFTIDQEVADQAATHIASVSELDRPVYVPK 798


>gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica]
 gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica]
          Length = 892

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/785 (34%), Positives = 424/785 (54%), Gaps = 35/785 (4%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLE 199
             KL ++  DG   S    ++   ++  C GL    V    +  +    +Y+G+S  +L+
Sbjct: 1   MSKLFVIKRDGRKESVQVDKITARIKRLCYGLDPDHVDPIQITLKIASGIYEGVSTIELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++  +    P+YA + AR  +  L ++         +K     +  LY     R 
Sbjct: 61  NLAAETAAYMTTLHPDYAILAARIAVSNLHKQT--------KKQFSQVVYDLYHYVNPRN 112

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +            +  +   L   + Y+RDF + Y G + L   Y L +NG+  E PQ 
Sbjct: 113 KKHSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFKTLERAYLLRVNGAVAERPQQ 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     +   RA+E YN +S  +F  ++PTL+N+GT  PQ+SSCFL  +  D
Sbjct: 173 MIMRVSVGIHG---DNIARAIETYNYMSQKYFTHASPTLYNAGTPQPQMSSCFLVNMKDD 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 230 SIDGIYDTLKTCALISKSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVYNNTARYV 289

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EF +LRKN G +  R  D+  A WIPDLFM+RV QNA
Sbjct: 290 DQGGNKRPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVEQNA 349

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L D+YG EF+  YE YE++         R I A  LW  +L    E+G
Sbjct: 350 EWTLMCPNECPGLDDVYGDEFKQLYEQYEKEGRGR-----RTIPAQKLWYHILDCQTESG 404

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
           +P++ +KD CN +S Q+++G + SSNLC EI   SS +E AVCNL SI L      +   
Sbjct: 405 NPFMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRDDTN 464

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +D+ KL    +  VR L+ +ID N + + +AKKSN  HR I LG+ G       L +P
Sbjct: 465 SFYDFKKLHDIAKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMALRLP 524

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E I   A+ AS E+A E GAY +F+GS   +G    D   +     
Sbjct: 525 FESEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFDLWNVTP--- 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    WD+LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 582 -------SELWEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRR 634

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F +VN +L+ +L +  LW+E M + +   +GS+ NI  IP ++K ++ T +EI  
Sbjct: 635 VLAGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWEISQ 694

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +IE A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+ +A +  
Sbjct: 695 KRIIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAAAPI 754

Query: 913 KSTLK 917
           + T+ 
Sbjct: 755 QFTID 759


>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST]
 gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/827 (34%), Positives = 438/827 (52%), Gaps = 41/827 (4%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
             K+ +   DG     +  ++   +++ C GL    V    +       +Y G++  +L+
Sbjct: 7   PNKMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLRVINGLYSGVTTQELD 66

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ TL     +YA + AR  +  L +E         +K     M  LY       
Sbjct: 67  NLAAETAATLTTDHADYAILAARLAVSNLHKET--------KKQFSEVMHDLYMMENEFL 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
             +       H  ++  +   L + + Y+RDF + Y G + L   Y L I G  +E PQ 
Sbjct: 119 KTKSPMISDFHYKVIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQH 178

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ +    A+E YNLLS  +F  ++PT+F + T+ PQLSSCFL T+  D
Sbjct: 179 MLMRVAIGIHGEDIDA---AIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSED 235

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V
Sbjct: 236 SIEGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYV 295

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  DM  A WIPDLFM+RV  N 
Sbjct: 296 DQGGNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANE 355

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P +   L D +G+EFE  Y  YE++         R++ A  LW  ++    ETG
Sbjct: 356 MWSLMCPHDCPGLSDTWGEEFEKLYTGYEKEGR-----FIRQVKAQDLWFAIIESQVETG 410

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      +  +
Sbjct: 411 VPYMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTY 470

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +T  R L+ +ID+N + + +AK+SN  HR IG+G+ G   A  L+  PY S
Sbjct: 471 DFAKLKEVAKTVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYES 530

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  +  E I + A+ AS ELA   G Y +++GS   +G+   +            
Sbjct: 531 EEAQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVSKGILQYEMWNKEP------ 584

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    W ELK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +S
Sbjct: 585 ----TDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLS 640

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L    LWD  M +++  ++GSI  I  IP +++ ++ T +EI     
Sbjct: 641 GEFQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTC 700

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T
Sbjct: 701 IKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFT 760

Query: 916 LKGVD----GKLNAVPVTDPNSS-----THSLGIPSSCTSDTECEVC 953
           +         + N   +++ N S          +  S  +  EC +C
Sbjct: 761 VDKTKLQNGNESNVSRMSNENGSFAERNRRMAEMVCSLENKDECMMC 807


>gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118]
          Length = 885

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/813 (32%), Positives = 422/813 (51%), Gaps = 38/813 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L
Sbjct: 13  TPTQMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVEL 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++   
Sbjct: 73  DNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPM 131

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +E     +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ
Sbjct: 132 ISDEIYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  
Sbjct: 185 HLVMRVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  
Sbjct: 242 DSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARY 301

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++
Sbjct: 302 VDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQED 361

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ET
Sbjct: 362 GSWTLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTET 415

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611
           G P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A       
Sbjct: 416 GTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSED 475

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L
Sbjct: 476 GKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMML 535

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D      
Sbjct: 536 RLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP 595

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                          W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y
Sbjct: 596 ----------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +E
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +  + T+        A  +   +     + +P 
Sbjct: 766 AAIQFTIDQEVADQAATHIASVSELDRPVYVPK 798


>gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii str. 17XNL]
 gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii]
          Length = 847

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/834 (35%), Positives = 444/834 (53%), Gaps = 53/834 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++   G     +  ++   ++    GL + V    V       MY G+   +L+   
Sbjct: 41  TMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELA 100

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+++ + AR   + L +     + K  +    ++               
Sbjct: 101 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAKVAEALYSYKDI------------R 148

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + DF +     L  ++ Y RDF ++Y G + L   Y L IN   IE PQ 
Sbjct: 149 GRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQH 208

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D
Sbjct: 209 LLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKSD 265

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V
Sbjct: 266 SIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYV 325

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N 
Sbjct: 326 DQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFMKRVKENR 385

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG
Sbjct: 386 NWTLMCPNECPGLSESWGEEFEKLYTKYEEENLGK-----KTVLAQDLWFAILQSQIETG 440

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         +
Sbjct: 441 VPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDREKKE 500

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R LD +I+ N + I++A+KSN  HR IG+G+ G      LL  PY 
Sbjct: 501 FDFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFMLLRYPYE 560

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA E+     E + + A+  SVELAQ  G Y S+KGS   QG+   D   +  + +  
Sbjct: 561 SDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPASQGILQFDMWNVKVDNKY- 619

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD LKK++   G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +
Sbjct: 620 --------WDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVL 671

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP DLK+++ T +EI    
Sbjct: 672 SGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTVWEIKQKN 731

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K 
Sbjct: 732 IIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKF 791

Query: 915 TL-----------KGVDGKLNAVPVTDPNSSTHSLGIPSSC----TSDTECEVC 953
           T+           K  DG      V+    ST S    ++C     +D  C +C
Sbjct: 792 TVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRNNDEPCLMC 845


>gi|6322123|ref|NP_012198.1| Rnr3p [Saccharomyces cerevisiae S288c]
 gi|730516|sp|P21672|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2;
           AltName: Full=Ribonucleotide reductase DNA
           damage-inducible regulatory subunit 2; AltName:
           Full=Ribonucleotide reductase R1 subunit 2; AltName:
           Full=Ribonucleotide reductase large subunit 2
 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|285812585|tpg|DAA08484.1| TPA: Rnr3p [Saccharomyces cerevisiae S288c]
          Length = 869

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/809 (33%), Positives = 421/809 (52%), Gaps = 38/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++     +E
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPMISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 120 IYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  WT
Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A           
Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P+
Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D          
Sbjct: 524 ESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            T+        A  +   +     + +P 
Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPK 782


>gi|1710391|sp|P50648|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 806

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/830 (35%), Positives = 439/830 (52%), Gaps = 47/830 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   ++    GL + V    V       MY G+   +L+    
Sbjct: 1   MYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+++ + AR   + L +     V +  +    ++     P      I + 
Sbjct: 61  QTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGRP---ASLISKE 117

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V   +L           L  ++ Y RDF ++Y G + L   Y L IN   IE PQ   MR
Sbjct: 118 VYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + G
Sbjct: 172 VSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEG 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 229 IFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGG 288

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N  WTL
Sbjct: 289 GKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG P++
Sbjct: 349 MCPNECPGLSETWGEEFEKLYTKYEEENMGK-----KTVLAQDLWFAILQSQIETGVPYM 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYD 619
            +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         +F++ 
Sbjct: 404 LYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFK 463

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL  PY S  A
Sbjct: 464 KLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAA 523

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E+     E + + A+  SVELA   G Y S++GS   QG+   D      + +      
Sbjct: 524 KELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKY----- 578

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 WDELK +++  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +SG+F
Sbjct: 579 ----WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    +I+ 
Sbjct: 635 FVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-- 916
           A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K T+  
Sbjct: 695 AADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDT 754

Query: 917 ---------KGVDGKLNAVPVTDPNSSTHSLGIPSSC----TSDTECEVC 953
                    K  DG      V+    ST S    + C     +D +C +C
Sbjct: 755 HVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804


>gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium
           berghei strain ANKA]
 gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium berghei]
          Length = 847

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/856 (34%), Positives = 446/856 (52%), Gaps = 53/856 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           + +   +                + ++   G     +  ++   ++    GL + V    
Sbjct: 19  KTDSGKIFDDGIKRTPSGKPIQTMYVLNRKGEEEDVSFDQILKRIQRLSYGLHELVDPAR 78

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           V       MY G+   +L+     +   +    P+++ + AR   + L +     + K  
Sbjct: 79  VTQGVINGMYSGIKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKSTNDDIGKVA 138

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLG 297
           +    ++               G  A L+ + + DF +     L  ++ Y RDF ++Y G
Sbjct: 139 EALYTYKDI------------RGRSASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFG 186

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            + L   Y L IN   IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPT
Sbjct: 187 FKTLERSYLLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPT 243

Query: 358 LFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFNSGT  PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +RG  ++I G
Sbjct: 244 LFNSGTPRPQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRG 303

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R
Sbjct: 304 TNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELR 363

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A W+PDLFMKRV +N  WTL  P+E   L + +G EFE  Y  YE +       
Sbjct: 364 ARDLFYAIWVPDLFMKRVKENKNWTLMCPNECPGLSESWGDEFEKLYTKYEEENLGK--- 420

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             + + A  LW  +L    ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +
Sbjct: 421 --KTVLAQDLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPD 478

Query: 596 ETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           E AVCNL SI L         +F++ KL    +   R LD +I+ N + I++A+KSN  H
Sbjct: 479 EVAVCNLASIALCKFVDREKKEFNFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRH 538

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G      LL  PY S EA E+     E + + A+  SVELAQ  G Y S+KG
Sbjct: 539 RPIGIGVQGLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKG 598

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   QG+   D      + +            WD LKK++   G+RNS  +A  PTA+ +
Sbjct: 599 SPASQGILQFDMWNAKVDNKY---------WDWDLLKKKISIHGLRNSLLLAPMPTASTS 649

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++S +P   N+Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  
Sbjct: 650 QILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQY 709

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I  IP+DLK+++ T +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W
Sbjct: 710 ISEIPNDLKELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGW 769

Query: 894 LMGLKT-TYYLRSRSATSVEKSTL-----------KGVDGKLNAVPVTDPNSSTHSLGIP 941
             GLKT  YYLR+++AT   K T+           K  +G      V+    ST S    
Sbjct: 770 EKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQ 829

Query: 942 SSC----TSDTECEVC 953
           ++C     +D  C +C
Sbjct: 830 NACPLRRNNDEPCLMC 845


>gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           knowlesi strain H]
 gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 848

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/835 (34%), Positives = 445/835 (53%), Gaps = 54/835 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++   G     +  ++   ++    GL + V    V       MY G+   +L+   
Sbjct: 41  TMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELA 100

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+++ + AR   + L +     + +  +         +Y +        
Sbjct: 101 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAEVAEALY------MYKDV------R 148

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + DF +     L  ++ Y RDF ++Y G + L   Y L ING  IE PQ 
Sbjct: 149 GRPASLISKEVYDFMIQHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGKIIERPQH 208

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D
Sbjct: 209 LLMRVSIGIHIGDLEK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLCMKSD 265

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V
Sbjct: 266 SIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYV 325

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N 
Sbjct: 326 DQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENQ 385

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+E   L + +G EFE  Y  YE +         + + A  LW  +L    ETG
Sbjct: 386 NWTLMCPNECPGLSESWGAEFEKLYLKYEEEGMGK-----KTVLAQDLWFAILQSQIETG 440

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQ 615
            P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         +
Sbjct: 441 VPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDVDKRE 500

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++ KL    +   R LD +I+ N + +++A++SN  HR IG+G+ G      LL  PY 
Sbjct: 501 FNFKKLYEITKIITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQGLADTFMLLRYPYE 560

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+   D   +  + +  
Sbjct: 561 SDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPASQGILQFDMWNVKVDNKY- 619

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD+LK+++K  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +
Sbjct: 620 --------WDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVL 671

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP+DLK+++ T +EI    
Sbjct: 672 SGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTVWEIKQKN 731

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K 
Sbjct: 732 IIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKF 791

Query: 915 TLKGVDGKLNA----------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K  A                  ++  ++ T ++  P     D +C +C
Sbjct: 792 TVDTQVAKNAAKMKNEEGVAITREVSRETISTESTVTQNVVCPLRRNKDDQCLMC 846


>gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
           [Bacteriovorax marinus SJ]
          Length = 785

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/819 (34%), Positives = 448/819 (54%), Gaps = 46/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G        ++   +E     L    +   ++ S+  + ++DG+S  +L+   
Sbjct: 1   MYVITRSGEREPIKFDKITERIESLAFDLDKEFIDPSLITSKVIEGIFDGISTPELDKLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  + P+Y+K+  R  +  L +E      +  ++  ++                
Sbjct: 61  GETAAYLSTQHPDYSKLAGRIAVSNLHKETRGCFSENIKEMYNYVNPA-----------T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A L+ + + +    +   L   +  +RDF ++Y G + L   Y L ++G   E P  
Sbjct: 110 GEMAPLISKELYEVVMENAEMLDTAVDDKRDFNYDYFGFKTLERSYLLKMDGKITERPGQ 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+ + +    K A+E YNL+S  +F  ++PTLFNSGT  PQLSSCFL T+  D
Sbjct: 170 MLMRVSVGIHMND---MKAAIETYNLMSEKYFTHASPTLFNSGTSKPQLSSCFLLTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+++A++++ +GG+G     +R  G+ I GTNG S G++P LKV NDTA  V
Sbjct: 227 SIEGIYDTLKQSALISQSAGGIGLSIHNIRAKGSFIKGTNGTSNGIVPMLKVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ +FL+++KNTG D  R  D+  A WI DLFMKRV  + 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   + + YG EFE  Y  YE +         + + A  LW  +L    ETG
Sbjct: 347 MWSLFCPHECPGMAETYGAEFEALYTKYESEGK-----AKKVVRAQDLWFAVLESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI  N+    A   
Sbjct: 402 SPYMLYKDSINEKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKT 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL   +  A   L+ +IDIN + + +AK SN  HR IGLG+ G       +   + 
Sbjct: 462 YDHKKLYDVVYRATLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA+E+ ++  E I F A+SAS +LA + GAY +++GS   QG F  D  G+    ++ 
Sbjct: 522 SPEALELNNQIFETIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPSAKN- 580

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 581 --------WDWSALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVL 632

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN FLVN+L +  LWD+ M +++  ++GSI  IERIP++LK ++ T +EI    
Sbjct: 633 SGEFAVVNKFLVNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKT 692

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I  ++ R  +IDQ QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+R+A +  + 
Sbjct: 693 VINMSAGRAPYIDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAAVNAVQF 752

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+K    K+        N       +  S  +  +C +C
Sbjct: 753 TVKNDTPKV--------NKEDAQAAMVCSIENPDDCVMC 783


>gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13]
          Length = 885

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/813 (32%), Positives = 421/813 (51%), Gaps = 38/813 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L
Sbjct: 13  TPTQMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVEL 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++   
Sbjct: 73  DNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPM 131

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +E     +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ
Sbjct: 132 ISDEIYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  
Sbjct: 185 HLVMRVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  
Sbjct: 242 DSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARY 301

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++
Sbjct: 302 VDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQED 361

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ET
Sbjct: 362 GPWTLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTET 415

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611
           G P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A       
Sbjct: 416 GTPFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSED 475

Query: 612 -ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L
Sbjct: 476 GKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMML 535

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D      
Sbjct: 536 RLPFESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP 595

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                          W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y
Sbjct: 596 ----------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +E
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +  + T+        A  +   +     + +P 
Sbjct: 766 AAIQFTIDQEVADQAATHIASVSELDRPVYVPK 798


>gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus]
 gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus]
          Length = 771

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDIE---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L D++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK ++++ G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWDWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PPVVCDSEICTSC 769


>gi|114635719|ref|XP_001159937.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 3
           [Pan troglodytes]
          Length = 752

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/779 (36%), Positives = 444/779 (56%), Gaps = 37/779 (4%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K
Sbjct: 1   MKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KK 52

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQ 299
                M+ LY          G  + ++ +S +D  L     L + + Y+RDF++ Y G +
Sbjct: 53  VFSDVMEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 109

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLF
Sbjct: 110 TLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLF 166

Query: 360 NSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I GTN
Sbjct: 167 NAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTN 226

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           G S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  
Sbjct: 227 GNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRAR 286

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       V 
Sbjct: 287 DLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VR 341

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E 
Sbjct: 342 KVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEV 401

Query: 598 AVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR I
Sbjct: 402 AVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPI 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS  
Sbjct: 462 GIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPV 521

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I 
Sbjct: 522 SKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQIL 571

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  
Sbjct: 572 GNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPE 631

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  G
Sbjct: 632 IPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQG 691

Query: 897 LKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LKT  YYLR+R A +  + TL K        V   +     ++  +  S  +  EC +C
Sbjct: 692 LKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 750


>gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis
           T2Bo]
 gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis]
          Length = 838

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/835 (35%), Positives = 436/835 (52%), Gaps = 37/835 (4%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKN 188
            A   + S       + ++   G     +  R+   + +   GL   V +  V       
Sbjct: 13  DAFEEAHSTELAPKAMFVINRKGESEEVHFDRILERIRKLSFGLHSLVDAPRVTQSVING 72

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+  S L+     +   +    P+Y+K+ AR +++ L +  L            ++ 
Sbjct: 73  MYSGIRTSQLDELAAQTCAYMAATHPDYSKLAARIVVDNLHKNTLDNYADVITALFKYK- 131

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                +     I E V   ++       ++  +  ++ Y RDF ++Y GL+ L   Y L 
Sbjct: 132 --YIYDSNASLISEEVYDFIMA------NIDRINAEIDYSRDFQYDYFGLKTLERSYLLR 183

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           IN   +E PQ   MRV+ G+   + E   R ++ Y+L+S  +F  +TPTLF SGT  PQ+
Sbjct: 184 INDKIVERPQHMLMRVSAGIHTGDIE---RTIQTYHLMSQKYFTHATPTLFFSGTPRPQM 240

Query: 369 SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  +  D L GIF  L + A ++K +GG+G     +R  GA+I GTNGKS G++P 
Sbjct: 241 SSCFLLDMKDDSLAGIFETLTQCAFISKCAGGIGLACHKIRASGAYIRGTNGKSNGLVPM 300

Query: 428 LKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L++ N TA  V+QGG KRKG+   YLE WH D+ +FLDLRKN G +  R  D+  A WIP
Sbjct: 301 LRIFNSTARYVDQGGGKRKGSFAIYLEPWHADIMDFLDLRKNHGAEEARARDLFYALWIP 360

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  N  WTL  PDE   L+D++G EFE  Y  YE +         + I A  LW
Sbjct: 361 DLFMKRVESNGDWTLMCPDECRGLYDVWGDEFEALYTKYEMEGLGR-----KTIPAQTLW 415

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +L    ETG+P++ +KD CN +S QQ++G + SSNLC EI   +S EE AVCNL SI 
Sbjct: 416 FAILQSQIETGNPFMLYKDACNAKSNQQNLGTIKSSNLCCEIVQYTSPEEVAVCNLASIA 475

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L  +    N  +D+ KL    R     L+ VID N + + +AK SNH HR IG+G+ G  
Sbjct: 476 LPMYVDKENKTYDFKKLYDVARVITYNLNKVIDRNYYPVPEAKVSNHRHRPIGVGVQGLA 535

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
               L+  P+ S EA E+     E I +  +  S+ LA++ G Y S+ GS   QG    D
Sbjct: 536 DTFMLMRYPFESEEAKELNRRIFETIYYGCLDESISLAEKYGTYESYPGSPASQGKLQFD 595

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G   + +            WD LK+R+   G+RNS  +A  PTA+ + I G ++S +P
Sbjct: 596 LWGATVDNK---------LWDWDGLKQRMAKHGLRNSLFLAPMPTASTSQILGNNESFEP 646

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F VVN  L+ +L    LWD+AM   L  ++GS+ +IE IP  +K +
Sbjct: 647 YTSNIYYRRVLSGEFFVVNPHLLRDLVDLGLWDDAMKEKLIAYNGSLRHIEGIPQHIKDL 706

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    +I+ A+ R  +IDQ+QSLN+YLD+P+  KL  ++   W  GLKT TYYL
Sbjct: 707 YKTVWEIKQKSIIDMAADRGIFIDQSQSLNIYLDQPTFGKLTSMHFYGWKKGLKTGTYYL 766

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953
           R+++AT   K T+     ++             +  + + G P S    +   VC
Sbjct: 767 RTQAATDAIKFTVDTSVSQMAKATSQQQRAKATDGVSTTEGSPVSTEDPSGYAVC 821


>gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 766

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/789 (34%), Positives = 440/789 (55%), Gaps = 42/789 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +   + ++  +G   S +  ++   + + C GL    V   ++  +    +Y G++  +L
Sbjct: 6   LRNSMFVVKRNGRHESIHFDKITSRISKLCYGLNTDFVDPCVITQKVIVGLYPGVTTVEL 65

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     ++ T+  K P+YA + AR  +  L +E         +K     M  LY      
Sbjct: 66  DNLAAETAATMTTKHPDYAILAARLAISNLHKET--------KKVFSEVMTDLY-----H 112

Query: 259 YIEE--GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
            + E  G    ++ E        +  +L + + Y+RDF + Y G + L   + L ING  
Sbjct: 113 MVNETNGKSTPMISEETYKIVMNNADFLNSSIVYDRDFNYNYFGFKTLERAHLLKINGKV 172

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ   MRV++G+     +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL
Sbjct: 173 VERPQHMLMRVSIGIHG---DDLSSAIETYNLMSEKWFTQASPTLFNAGTPKPQLSSCFL 229

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N
Sbjct: 230 LQMKDDSIEGIYDTLKQCALISKSAGGIGINIHNIRASGSYIAGTNGTSNGIVPMLRVYN 289

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QG  KR GA+  YLE WH DV +FLDL+KNTG +  R  D+    WIPDLFMK
Sbjct: 290 NTARYVDQGGNKRPGAIAIYLEPWHADVFDFLDLKKNTGKEESRARDLFYGLWIPDLFMK 349

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++  W+L  P E   L D+YG++FE  Y  YE      E +  R++ A  LW  ++ 
Sbjct: 350 RVEEDGIWSLMCPHESPHLQDVYGEDFEKLYVRYE-----TEKRYRRQVRAQQLWSAIIE 404

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P++ +KD CN +S Q++VG +  SNLCTEI   +S +E AVCNL SI L    
Sbjct: 405 SQTETGTPYMLYKDACNRKSNQKNVGTIKCSNLCTEIVEYTSVDEVAVCNLASIALNRFV 464

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD++KL    R   R L+ +ID+N + I +AK SN  HR IG+G+ G   A  LL 
Sbjct: 465 YHGHFDFEKLRQVTRVVTRNLNKIIDVNYYPIPEAKLSNMRHRPIGIGVQGLADAFILLR 524

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+   EA EI  +  E I + A+  S EL+++ G Y ++ GS   QG+   D   +   
Sbjct: 525 LPFDCDEACEINKKIFETIYYGALEESCELSKKFGPYETYPGSPVSQGILQYDMWNVTP- 583

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    ++   W  LK+R+K+ G+RNS  +A  PTA+ A I G +++++P   N+Y 
Sbjct: 584 ---------SNLWDWSALKERIKSFGIRNSLLVAPMPTASTAQILGNNEAMEPYTSNVYT 634

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN  L+ +L +  LW++ + ++L  ++GS+  +  IP +LK ++ T +EI
Sbjct: 635 RRVLSGEFQIVNHHLLKDLTRLGLWNDNLKNELIANNGSVQKL-NIPKELKMLYRTVWEI 693

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               ++E ++ R  ++DQ+QSLN+++ +P+  KL  ++   W +GLKT  YYLR++ A +
Sbjct: 694 SQKNILEMSADRGAFVDQSQSLNIHIAQPTYGKLTSMHFCGWKLGLKTGMYYLRTKPAVN 753

Query: 911 VEKSTLKGV 919
             + T+   
Sbjct: 754 AIQFTVDKS 762


>gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 812

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/839 (33%), Positives = 447/839 (53%), Gaps = 59/839 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLAYGLSQDHCDPVLVAQKVCAGVYRGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  +        K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNTM--------KSFSETVKVMYTHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+ + + +    +   L +++ Y+RDF +++ G + L   Y L + G  +E PQ 
Sbjct: 110 GLMAPLIADDVYEIIMKNATRLDSEIIYDRDFDYDFFGFKTLERSYLLKVGGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    AV+ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDIE---SAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L E A ++K +GG+G     VR  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLSECASISKSAGGIGVSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV +N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIYEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQKNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G EF+  Y  YER+         + +SA +LW ++L    ETG
Sbjct: 347 QWSLFCPSEAPGLADCWGDEFQNLYNKYEREGK-----AKKIVSAQSLWFEILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKSSNLCTEIVEFTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +IDIN + IE A++SN  HR IG
Sbjct: 462 IESHPAKLVGSIGSKNRYFDFDKLAEITSVVTWNLNKIIDINYYPIETARRSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G      LL +P+ SPEA ++  +  E I +HA+ AS E+A + G Y ++ G    
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYDGCPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  ++  +  +G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVVP----------SDRWDWPAIRGMISKVGLRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + +++ Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNNIIYDDGSVQKITEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+ +  KL  ++   W  GL
Sbjct: 692 PDDLKAIYKTVWEIKQKTVVDMAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHTWSKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLR+R+A    K T+       K  A    + +       +  S  +  +C  C
Sbjct: 752 KTGMYYLRTRAAADAIKFTVDTSLLKDKKPANAEEEEDLEAKMAQVTCSLNNREDCLAC 810


>gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291]
          Length = 869

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/809 (33%), Positives = 420/809 (51%), Gaps = 38/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++     +E
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPMISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 120 IYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  WT
Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A           
Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P+
Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D          
Sbjct: 524 ESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            T+        A  +   +     + +P 
Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPK 782


>gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large
          Length = 811

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/838 (34%), Positives = 448/838 (53%), Gaps = 58/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +    
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPK---T 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              A ++ + + D  +     L + + Y+RDF + + G + L   Y L I+G   E PQ 
Sbjct: 110 DKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+  D
Sbjct: 170 MIMRVAVGIHGEDIEA---AIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  AM++K +G L  +   +R  G++I GTNG S G++P ++V N+TA  V
Sbjct: 227 SIEGIYDTLKMCAMISKTAGVLVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA  AYLE WH DV +FL+LRK  G++  R   M  A WIPDLFM+RV +N 
Sbjct: 287 DQGGNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WT F P+E   L D++G EF   YE YE++         R + A  +W  +L    ETG
Sbjct: 347 QWTFFCPNEAPGLADVWGDEFVALYEKYEKENRGR-----RSLPAQKVWYAILQSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           +P++ +KD CN +S Q++VG + SSNLCTEI   SS +E AVCNL S+ L     + +++
Sbjct: 402 NPFMLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYN 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S 
Sbjct: 462 FQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESA 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             
Sbjct: 522 GAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN---------- 571

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +N T    W E K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 572 VNPTDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I
Sbjct: 632 EFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVI 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+
Sbjct: 692 DYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTV 751

Query: 917 ---------------------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                K    +++A P  +     +   +  S  +   CE+C
Sbjct: 752 DPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 824

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/848 (33%), Positives = 442/848 (52%), Gaps = 65/848 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  V       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKEKVQFDKITARVSRLCYGLDPEHVDAAAVTQRVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         QK  H  +     ++     +E
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQTDKAFSSVVQKL-HDWVNPKTGKHAPMISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             +  + H+         L + + Y+RDF + Y G + L   Y L I+G   E PQ   M
Sbjct: 120 VYEIVMKHK-------DELDSAIIYDRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E    A+E YN +S  +F  ++PTLFN+GT  PQLSSCFL T+  D + 
Sbjct: 173 RVAVGIHHDDIEA---AIETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKTCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA  AYLE WH DV +F++LRK  G +  R  ++  A WIPDLFM+RV +N  W+
Sbjct: 290 GNKRPGAFAAYLEPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F P+E   L D++G+EFE        +    E +  R + A  +W +++    ETG+P+
Sbjct: 350 FFCPNEAPGLADVWGEEFEEL-----YERYEREGRARRVLPAQKVWYEIIRAQSETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q+++G +  SNLCTEI   SS +E AVCNL SI L     + ++D+ +
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQ 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L +  +   R L+ VID+N + + +A++SN  HR +GLG+ G   A   L  PY SPEA 
Sbjct: 465 LHNVAKVVTRNLNRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++     E I   A+ AS ELA E G Y +++GS   QG+   D   +            
Sbjct: 525 KLNLLIFETIYHAALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWASLKAKIAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ +L    LWDE M + L  +DGSI  I  IP DLK ++ T +EI    +I+ A
Sbjct: 635 IVNPWLLRDLVDLGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK-- 917
           + R  +IDQ+QSLN+++ +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+   
Sbjct: 695 ADRGAFIDQSQSLNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPL 754

Query: 918 --------------------GVDGKLNAVPVTDPNSSTHSLG------------IPSSCT 945
                                    ++AV   +  +  +S              I  S  
Sbjct: 755 SVKQTNSASAPSPAPASIRPKSSASVSAVNKNEKENEQNSSDNQEKVDIYNSKVIACSIK 814

Query: 946 SDTECEVC 953
           +   CE+C
Sbjct: 815 NPEACEMC 822


>gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 773

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/817 (35%), Positives = 443/817 (54%), Gaps = 54/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    +   ++  +  + ++DG++ S+L+   
Sbjct: 1   MFVTKRDGRKQEVKFDKITARILKLCYGLDSVHIDPVLIAMKVIEGLFDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + +L  K P+YA + +R  +  L++           K+    +  LY     +    
Sbjct: 61  AEVAASLTVKHPDYALLASRIAISNLQKNT--------NKSFARTIGELYHYIDPK---T 109

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G KA L+ E +      +   L   + Y+RDF ++Y G + L   Y L ING  IE PQ 
Sbjct: 110 GKKASLIAEDVYKIVQNHAEILDATMIYDRDFGYDYFGFKTLERSYLLKINGKVIERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   +      A+E Y+ +S   F  +TPTLFN+GT +PQ+SSCFL  V  D
Sbjct: 170 LLMRVSIGIHKNDISA---AIETYHWMSERWFTHATPTLFNAGTPYPQMSSCFLMQVKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIF  L+  A +++ +GG+G     +R  G++I GT G S G+IP L+V NDTA  +
Sbjct: 227 SIEGIFDTLKACAKISQAAGGIGLSIHNIRATGSYIRGTGGISNGIIPMLRVYNDTARYI 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+  FLDLRKN G +  R  D+ TA WIPDLFMKRV ++ 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E  +LH+ +G+EFE  Y  YE++    E+     I A  LW K+L    ETG
Sbjct: 347 VWSLFCPNEAPNLHECWGEEFEHLYCLYEQEGKAREV-----IKAQDLWFKILESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           +P++ FKD CN +S Q+H+G +  SNLCTEI   +S  E AVCNL SI L     N  FD
Sbjct: 402 NPYMLFKDACNYKSNQKHLGTIKLSNLCTEIIEYTSPHEAAVCNLASIALPRFIINGHFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   R LD +ID N + I +A+ SN  HR IG+G+ G   A  LL +P+ S 
Sbjct: 462 HQKLFEVTQVITRNLDKIIDENSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSK 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +     E I F A++AS +LA+++G Y S++GS   +G+   +   +         
Sbjct: 522 EARALNQAIFETIYFGALTASKDLAKKKGRYPSYEGSPISKGILQYEMWNVKP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +S   W+ LK  +   G+RNS  +A+ PTA+ + I G ++  +P   NLY +  +SG
Sbjct: 575 ---SSNWDWEALKTEIAVHGIRNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +R+LW+E M   +   +GSI  IE IP ++K+++ T +EI    LI
Sbjct: 632 EFIVVNKHLMRDLVKRELWNEEMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALI 691

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR ++A    K T+
Sbjct: 692 DMAADRGPFICQSQSLNLFVESPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTV 751

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                        + N       I  S     +C  C
Sbjct: 752 -------------NQNYEQPQQEIACSL----DCLSC 771


>gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
 gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
          Length = 799

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/824 (34%), Positives = 448/824 (54%), Gaps = 42/824 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGKKEPVMFDKITARVKKMCYGLNKIVDPVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T+    P+YAK+ AR  +  L +          +K+    M  LY   F       
Sbjct: 61  ETAATMTTAHPDYAKLAARIAVSNLHKNT--------KKSFSETMDDLY---FYVNPRTE 109

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            KA LL + + +    +   L + + Y RDF ++Y G + L   Y L +NG   E PQ  
Sbjct: 110 KKAPLLADDVYEIIKANAEKLDSTIIYNRDFNYDYFGFKTLERSYLLKLNGQIAERPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+   + ++   A+  Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  +  D 
Sbjct: 170 LMRVSIGIHKNDIDE---AIATYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLQMQDDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+
Sbjct: 227 IEGIYDTLKQTAKISQSAGGIGLSLHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVD 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   YLE WH D+ +FLDL+KN G +  R  D+  A WI DLFMKRV ++  
Sbjct: 287 QGGGKRKGSFAMYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGE 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P E   L+D YG+EFE  Y +YE           + I A  LW K+L    ETG 
Sbjct: 347 WTLMCPHECPHLYDTYGEEFERLYTSYEAAGKGR-----KTIKARELWEKILESQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
           P++ +KD  N ++ Q+++G + SSNLCTEI   ++ +E AVCNL SI L    +  +   
Sbjct: 402 PYMLYKDAVNRKTNQKNLGTIRSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGE 461

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             F++ KL    +   R LD VID N + +++A+ SN  HR +GLG+ G       L +P
Sbjct: 462 KYFNHKKLFDVTKKVTRNLDTVIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA ++  +  E + + A+++S+E+A+ +  YS+FKGS   +G F  +  G+     
Sbjct: 522 FTSDEAKKLNQDIFETMYYAAVTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGVNDN-- 579

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    WD+L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y + 
Sbjct: 580 -----ELSGNWDWDKLRKNVMKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRR 634

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN  L+ +L +  LWD  M   +   +GSI +IE IP +L++++ T +E+  
Sbjct: 635 VLSGEFIVVNKHLLEDLVELGLWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSM 694

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A  R  +IDQ+QSLNL+L +P   KL  ++  AW  GLKT  YYLR++SA +  
Sbjct: 695 KDIIDMARHRGYFIDQSQSLNLFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAI 754

Query: 913 KSTL---KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + T+   K  +      P+T P      +        D +C +C
Sbjct: 755 QFTVSKEKKAEVIEEEKPMT-PAEFKAMVDASKGAGPDDDCLMC 797


>gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
 gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
          Length = 828

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/795 (35%), Positives = 439/795 (55%), Gaps = 30/795 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL   V    V       +YDG++ S+L+    
Sbjct: 1   MFVVKRDGHKEPVMFDKITARVRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T+    P+YA++ AR  +  L +          +K     +  LY     R  ++ 
Sbjct: 61  ETAATMTTAHPDYARLAARISVSNLHKNT--------KKTFTDVVTDLYEYVNPRTEKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PMISDEVYQVIQDNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           V++G+ + + +    A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D + G
Sbjct: 173 VSVGIHMDDLDA---AIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A W+ DLFMKRV  N  WTL
Sbjct: 290 GKRKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E  DL+++YG EFE  Y  YE++         + I A  LW K+L    ETG P++
Sbjct: 350 MCPHECPDLYNVYGDEFEALYTKYEQEGKGR-----KTIQARELWDKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     +  FD+  L
Sbjct: 405 LYKDAANNKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKAL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   R L+ VID N + + +A+ SN  HR +GLG+ G   A  +L +P+ S EA +
Sbjct: 465 YKVTKRVTRNLNKVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A  AS+E+AQE GAYS+F+GS   QG F  +   +          + +
Sbjct: 525 LNSEIFETLYFAACEASMEMAQEEGAYSTFEGSPMSQGEFQFNMWNINDS-------DLS 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+ +V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWNWSDLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LWD+++ + +  ++GSI  IE IP+D+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T+    
Sbjct: 698 QRGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTKEA 757

Query: 921 GKLNAVPVTDPNSST 935
            K    PV  P  + 
Sbjct: 758 KK---APVAQPAVAP 769


>gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata]
          Length = 894

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/796 (35%), Positives = 428/796 (53%), Gaps = 37/796 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + +    G        ++   +   C GL   + +  V       +Y+G++  +L+    
Sbjct: 1   MYVYKRSGRKEPVKFDKITARISRLCYGLDPRIDAVKVTQRIISGVYEGVTTVELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+YA + AR  +  L ++  T  + +     +H +     ++     +E 
Sbjct: 61  ETCAYMTTIHPDYATLAARVAISNLHKQT-TKQFSQVVSNLYHYINPATGKHAPMISDEV 119

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            +  + ++         L + + Y+RDF F Y G + L   Y L ING   E PQ   MR
Sbjct: 120 YQIVMDNK-------DELDSAIVYDRDFQFNYFGFKTLERSYLLRINGEVAERPQHLIMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D + G
Sbjct: 173 VALGIHGRDLEA---ALETYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG 
Sbjct: 230 IYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGG 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A W+PDLFMKRV QN  WTL
Sbjct: 290 NKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP     L D YGKEFE  YE YER+         + I A  LW  +L    ETG P++
Sbjct: 350 FSPSSAPGLSDCYGKEFEELYERYEREGRG------KTIKAQKLWYSILEAQTETGTPFM 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------ 615
            +KD CN +S Q+++GV+ SSNLC EI   SS +ETAVCNL SI L A    ++      
Sbjct: 404 IYKDACNEKSNQRNLGVIKSSNLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTST 463

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +++ KL    +   R L+ VID N + + +AK SN  HR I LG+ G      LL +P+ 
Sbjct: 464 YNFQKLHDIAKVITRNLNKVIDRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFD 523

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   ++ AS ELAQ+ G Y S++GS   +GVF  D           
Sbjct: 524 SEGAAKLNIQIFETIYHASLEASCELAQKDGPYQSYQGSPISKGVFQFDMWNAKP----- 578

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 579 -----FGMWDWDALRKDILKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVL 633

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +L+ +L    +WDE M   +   +GSI N+  IP +LK ++ T +EI    
Sbjct: 634 SGEFQVVNPYLLRDLVDLGIWDEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKT 693

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I  A+ R  +IDQ+ SLNL+L  P+  K+  ++   W  GLKT  YYLR+++A++  + 
Sbjct: 694 IINMAADRSVYIDQSHSLNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQF 753

Query: 915 TLKGVDGKLNAVPVTD 930
           T+     +  A  + D
Sbjct: 754 TIDQSVAQQAANNIAD 769


>gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus]
 gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus]
          Length = 771

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/790 (35%), Positives = 443/790 (56%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVVKRNGCRENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDIE---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L + +G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPNECPGLDNAWGDEFERLYTQYEREKRYKNI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SP
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYAGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK ++++ G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWESLKDKIRSHGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNEEIKNRIIADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+++A+S  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTL 750

Query: 917 KGVDGKLNAV 926
                K + V
Sbjct: 751 DKEKIKPSMV 760


>gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus]
          Length = 771

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNMDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDIE---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L D++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi]
 gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia
           malayi]
          Length = 1061

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/818 (33%), Positives = 443/818 (54%), Gaps = 47/818 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   + +  ++   + + C GL    V    +  +    +Y G++  +L+     
Sbjct: 13  VVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAE 72

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +  +I K P+YA + +R  +  L ++   +  K  ++            Y   + + G 
Sbjct: 73  IAADMITKHPDYATLASRITVSNLHKKTEKSFSKLSRRL-----------YNATHPKSGR 121

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L+ + + D    +   L + + +ERD+ + Y GL+ L   Y L ING   E PQ   
Sbjct: 122 HMPLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLKTLERSYLLQINGELAERPQHML 181

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+  ++ E    A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 182 MRVALGIHGEDIEA---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFEDSI 238

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A  V+Q
Sbjct: 239 EGIFETLKKCALISKSAGGIGLNVHCIRASGSAIAGTNGVSNGLVPMLRVFNNAARYVDQ 298

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ +FL+LRKN GD+  R  D+    W+PDLFM+RV  +  W
Sbjct: 299 GGNKRPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIW 358

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P E   L D +G+ FE  Y  YE +         +++ A  LW  ++    ETG P
Sbjct: 359 SLMCPAECPGLEDSWGEAFEKLYTQYEEEGR-----YRKQVPARKLWETIVFTQIETGMP 413

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDY 618
           ++ +KD CN ++ QQ++G +  SNLCTE+ L SS EE AVCNL SI L     +  ++D+
Sbjct: 414 YMVYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALGRFVTSEMKYDF 473

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             L    +  V+ L+ VID N + I +A++SN  HR IG+G+ G   A  L+  P+ S +
Sbjct: 474 KMLHEVTKVVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEK 533

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++     E I + A+ AS +LA+E+G Y S++GS   +G+   D  G+          
Sbjct: 534 ARDLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTP-------- 585

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T +  W  L++++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y ++ +SG 
Sbjct: 586 --TDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSGS 643

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F + N  L+N+L   DLWD+ M  ++  + GSI NIERIP +++ ++ T +E+    +I+
Sbjct: 644 FQIFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDIID 703

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL---------MGLKT-TYYLRSRSA 908
            A+ R  +IDQ+QSLN+++  P+   +  ++   W           GLKT  YYLR+R A
Sbjct: 704 MAADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRPA 763

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               + T+     K       D NS + S  IP++ + 
Sbjct: 764 VDAVQFTVDKTRLKEYDSVNGDKNSKSSSSSIPATTSE 801


>gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva
           strain Muguga]
 gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative
           [Theileria parva]
          Length = 898

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/798 (35%), Positives = 431/798 (54%), Gaps = 39/798 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V +  V       MY G+  S+L+    
Sbjct: 60  MYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSELDELAA 119

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+Y+++ A   ++ L +  L    +  +          Y   F       
Sbjct: 120 QTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRTLHS------YKHVFN------ 167

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+ + + +F   +   L  ++ Y RDF ++Y G + L   Y L  NG  +E PQ  
Sbjct: 168 TNASLISDDVFEFVMANKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIVERPQHM 227

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV+ G+   + E   R ++ Y+L+S  +F  +TPTLFN+GTRHPQ+SSCFL  +  D 
Sbjct: 228 IMRVSAGIHCGDLE---RTIQTYHLMSQRYFTHATPTLFNAGTRHPQMSSCFLLDMQDDS 284

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GIF  L + A ++K +GG+G     +R  G++I GTNG S G++P LK+ N TA  V+
Sbjct: 285 LAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNATAKYVD 344

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   YLE WH D+ + LDLRKN G + +R  D+  A WIPDLFMKRV  N  
Sbjct: 345 QGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGAEDQRARDLFYALWIPDLFMKRVEANKN 404

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  PDE   LH+++G EFE  Y  YE+Q         + I A  LW  +L    ETG 
Sbjct: 405 WTLMCPDECRGLHEVWGDEFERLYTQYEQQGLGR-----KTIPAQKLWFAILQSQIETGT 459

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P++ +KD CN +S QQ++G + SSNLC EI   ++ +E AVCNL S+ L          F
Sbjct: 460 PYMLYKDACNAKSNQQNLGTIKSSNLCCEIVQFTNKDEVAVCNLASVALPKFVNTQTRTF 519

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    R     L+ VID N + +++A+ SN  HR +G+G+ G      L+  P+ S
Sbjct: 520 DFKKLYEICRVITYNLNKVIDRNYYPVKQARVSNFRHRPMGVGVQGLADTFMLMRYPFES 579

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+     E + +  +S S++LA++ G Y +++GS   +G+   D  G         
Sbjct: 580 DEARELNKRIFETMYYACLSESIDLARQLGTYETYEGSPASKGLLQFDLWG--------- 630

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           A    S   WD+LK  ++  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +S
Sbjct: 631 AKVDNSLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIYYRRVLS 690

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+N+L +  LW+E M   L  ++GS+ +I+ IP  +K ++ T +EI    +
Sbjct: 691 GEFFVVNPHLLNDLIELGLWNETMKQKLIAYNGSLKHIDEIPQHIKDLYKTVWEIKQKHI 750

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++++P+  KL  ++   W  GLKT  YYLR++ AT   K T
Sbjct: 751 IDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFT 810

Query: 916 LKGVDGKLNAVPVTDPNS 933
           +     +L A     PNS
Sbjct: 811 VDASISQL-AKNRAKPNS 827


>gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 807

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/803 (34%), Positives = 438/803 (54%), Gaps = 57/803 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGKQETVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R    
Sbjct: 61  AETAAAMTANHPDYASLAARIAVSNLHKNT--------KKSFSETVRDMYSHVNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ + L+   + +        L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A++ Y+L+S   F  ++PTLFNSGT   QLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKEDID---SAIKTYHLMSQRWFTHASPTLFNSGTPRAQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ +FL+LRKN G +  R  D+    WIPDLFM+RV  + 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YE Q         + + A  LW ++LT   ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGAEFERLYTQYENQGK-----AKKVVQAQQLWYEILTSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L      N   
Sbjct: 402 TPYMLFKDSCNSKSNQQNLGTIKSSNLCTEILEYTSPTETAVCNLASIALPRFVRENDIP 461

Query: 616 ------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+DKLA    T    L+ +ID+N + +E AK SN  HR IG
Sbjct: 462 LDSHPSKIVGSLDSKNRYFDFDKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL +P+ SPE+ ++  +  E I +HA+ +S E+A + G Y +++GS   
Sbjct: 522 IGVQGLADAFILLGMPFDSPESQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++           + R  W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVIP----------SDRWDWAALRDMISKNGIRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + + + +GSI N++ I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN+++++P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYRTVWEIKQRTVVDMAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGV 919
           KT  YYLRSRSA    K T+   
Sbjct: 752 KTGMYYLRSRSAADAIKFTVDTA 774


>gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria
           annulata strain Ankara]
 gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative
           [Theileria annulata]
          Length = 891

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/811 (34%), Positives = 435/811 (53%), Gaps = 38/811 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V +  V       MY G+  S+L+    
Sbjct: 60  MYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSELDELAA 119

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+Y+++ A   ++ L +  L    +  +    H  + +Y           
Sbjct: 120 QTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRVL--HSYKHVYN---------- 167

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+ + + +F   +   L  ++ Y RDF ++Y G + L   Y L  NG  +E PQ  
Sbjct: 168 TNASLISDDVFEFVMENKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIVERPQHM 227

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV+ G+   + E   R ++ Y+L+S  +F  +TPTLFN+GT+HPQ+SSCFL  +  D 
Sbjct: 228 IMRVSAGIHCGDLE---RTIQTYHLMSQRYFTHATPTLFNAGTKHPQMSSCFLLDMQDDS 284

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GIF  L + A ++K +GG+G     +R  G++I GTNG S G++P LK+ N TA  V+
Sbjct: 285 LAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNSTAKYVD 344

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG+   YLE WH D+ + LDLRKN G + +R  D+  A WIPDLFMKRV  N  
Sbjct: 345 QGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGSEDQRARDLFYALWIPDLFMKRVEANKN 404

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  PDE   L++++G EFE  Y  YE+Q         + I A  LW  +L    ETG 
Sbjct: 405 WTLMCPDECRGLYEVWGDEFERLYTQYEQQGMGR-----KTIPAQKLWFAILQSQIETGT 459

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P++ +KD CN +S QQ++G + SSNLC EI   +S +E AVCNL S+ L          F
Sbjct: 460 PYMLYKDACNSKSNQQNLGTIKSSNLCCEIVQFTSKDEVAVCNLASVALPKFVNTQTRTF 519

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    R     L+ VID N + +++A+ SN  HR +G+G+ G      L+  P+ S
Sbjct: 520 DFKKLYEICRVITYNLNKVIDRNYYPVKQARASNFRHRPMGVGVQGLADTFMLMRYPFES 579

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+     E + +  +S S++LA++ G Y S++GS   +G+   D  G         
Sbjct: 580 DEARELNKRIFETMYYACLSESIDLARQYGTYESYEGSPASKGLLQFDLWG--------- 630

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           A    S   WD+LK  ++  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +S
Sbjct: 631 AKVDNSLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIYYRRVLS 690

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+N+L    LW+E M   L  ++GS+ +I+ IP  +K+++ T +EI    +
Sbjct: 691 GEFFVVNPHLLNDLIDLGLWNETMKQKLIAYNGSLKHIDEIPSHIKELYKTVWEIKQKHI 750

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++++P+  KL  ++   W  GLKT  YYLR++ AT   K T
Sbjct: 751 IDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFT 810

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           +     +L    V   NS      + S  + 
Sbjct: 811 VDASISQLAKSRVKPANSIMSDGNMTSIMSD 841


>gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|132611|sp|P12848|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus]
 gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR]
          Length = 771

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PPVVCDSEICTSC 769


>gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK ++KT G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIKTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 444/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA+++G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKKGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A A+W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARAVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW+  + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNNEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 441/787 (56%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++   W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SNLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii GT1]
 gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii VEG]
          Length = 877

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/845 (34%), Positives = 448/845 (53%), Gaps = 65/845 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 60  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 119

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++++ AR  ++ L +           +   +  +             G
Sbjct: 120 QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQLHGYVDKL------------G 167

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +A+L+   + +F   +   L   L Y RDF ++Y G + L   Y L I+   +E PQ  
Sbjct: 168 REAKLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHM 227

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA G+   + EK   A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D 
Sbjct: 228 LMRVACGIHCGDVEK---AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDS 284

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+
Sbjct: 285 IDGIFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVD 344

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAG
Sbjct: 345 QGGGKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAG 404

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L +++G EF+  YE YER+         + I A  LW  +L    ETG 
Sbjct: 405 WTLMCPNECPGLTEVWGDEFKELYERYEREGRGR-----KTIPAQHLWFAILQAQIETGT 459

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P++ +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L       +  F
Sbjct: 460 PYMLYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTF 519

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           DY+ L   ++   R L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ S
Sbjct: 520 DYEHLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDS 579

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +     E I F A+ AS ELA E G Y++++GS   QG+   D  G+        
Sbjct: 580 PEARVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP------ 633

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +S
Sbjct: 634 ---SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLS 690

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +
Sbjct: 691 GEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVV 750

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T
Sbjct: 751 LDLAIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT 810

Query: 916 LK-----GVDGKLNAVPV---------------TDPNSSTHSLGIPSSC-------TSDT 948
           +          KL+   V                D   +     +   C       + D 
Sbjct: 811 VDSQLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDE 870

Query: 949 ECEVC 953
            CE+C
Sbjct: 871 PCEMC 875


>gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L D++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDDVWGDEFERLYTQYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|132610|sp|P20503|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|56404829|sp|Q76RD8|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen]
 gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus]
 gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus]
 gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus]
 gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus]
 gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara]
 gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus]
 gi|417658|sp|P32984|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus]
 gi|297239|emb|CAA48999.1| K4L [Variola virus]
 gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large
           subunit); putative [Variola major virus]
 gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa]
 gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus]
 gi|745175|prf||2015436BP K4L gene
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/817 (34%), Positives = 443/817 (54%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKQVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PLVVCDSEICTSC 769


>gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus]
 gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus]
          Length = 771

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/784 (34%), Positives = 439/784 (55%), Gaps = 32/784 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 FPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKL 923
             K 
Sbjct: 754 KIKP 757


>gi|62288418|gb|AAX78464.1| unknown [synthetic construct]
          Length = 797

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/826 (33%), Positives = 445/826 (53%), Gaps = 56/826 (6%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGL 193
             D     ++ ++  +G   +    ++   + + C GL    +    +  +  + +Y+G+
Sbjct: 18  DDDDKHMLEMFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGV 77

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +  +L+T     + T   + P+YA + AR  +  L +E         +K     M+ L+ 
Sbjct: 78  TTVELDTLAAEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFN 129

Query: 254 EYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
               +    G  + ++    MD        L + + YERDF++ Y G + L   Y L IN
Sbjct: 130 YVNPKN---GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKIN 186

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
              +E PQ   MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SS
Sbjct: 187 NKIVERPQHMLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSS 243

Query: 371 CFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  +  D + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+
Sbjct: 244 CFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLR 303

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           V N+TA  ++QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDL
Sbjct: 304 VYNNTARYIDQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDL 363

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +  W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ 
Sbjct: 364 FMKRVKDDGEWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKA 418

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ETG P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L 
Sbjct: 419 IIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALN 478

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               + +FD+ KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  
Sbjct: 479 MFVIDGRFDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFI 538

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL+ P+ S EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   +
Sbjct: 539 LLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNV 598

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N
Sbjct: 599 VP----------SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSN 648

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T 
Sbjct: 649 IYTRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTI 707

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ 
Sbjct: 708 WEIPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKP 767

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           A++  + TL     K                  P        C  C
Sbjct: 768 ASAPIQFTLDKDKIK------------------PPVVCDSEICTSC 795


>gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus]
          Length = 771

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/790 (35%), Positives = 442/790 (55%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SP
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAV 926
                K   V
Sbjct: 751 DKDKIKPQVV 760


>gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus]
 gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus]
 gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus]
 gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/790 (35%), Positives = 441/790 (55%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG+D  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKCI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAV 926
                K   V
Sbjct: 751 DKDKIKPQVV 760


>gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
 gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
          Length = 878

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/831 (34%), Positives = 450/831 (54%), Gaps = 57/831 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+
Sbjct: 1   MTSMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++  L    P+YA + AR  +  L +          +K+    M  LY     R 
Sbjct: 61  ELAAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRN 112

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G +A L+ + + D    +   L ++++Y+RDF ++Y G + L   Y L I+G  +E 
Sbjct: 113 ---GEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+  ++ E    A+  Y+ +S   F  ++PTLFN GT  PQLSSCFL  +
Sbjct: 170 PQHMLMRVAVGIHKEDIE---SAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAM 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L+E A+++K +GG+G     +RG G++I GTNG S G++P L+V NDTA
Sbjct: 227 RDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   Y+E WH DV +FLDLRKN G +  R  D+    WIPDLFM+RV 
Sbjct: 287 RYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVE 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+LF P+E   L D +G+EFE  Y  YE++         R + A  LW  +L    
Sbjct: 347 ADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEGRSR-----RVVRAQQLWFAILEAQV 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L       
Sbjct: 402 ETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRER 461

Query: 612 -----------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                            AN  FD++KLA   +   R L+ +ID+N +   KA++SN  HR
Sbjct: 462 GSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHR 521

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G      LL + + SPEA E+  +  E +   A+S S ELA+  G Y ++ GS
Sbjct: 522 PIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              QGV   D  G+     D        R  W+EL+ R+   G+RNS  +A  PTA+ + 
Sbjct: 582 PVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQ 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  +W   + ++L   +GS+  +
Sbjct: 635 ILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL 694

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           E IP++LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW 
Sbjct: 695 E-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWR 753

Query: 895 MGLKT-TYYLRSRSATSVEKSTL--KGVDGKLNAVPVTDPNSSTHSLGIPS 942
            GLKT  YYLR+++A    K T+  + +  K      +   ++T  + +PS
Sbjct: 754 KGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMKMPS 804


>gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii]
          Length = 878

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/831 (34%), Positives = 450/831 (54%), Gaps = 57/831 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+
Sbjct: 1   MTSMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++  L    P+YA + AR  +  L +          +K+    M  LY     R 
Sbjct: 61  ELAAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRN 112

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G +A L+ + + D    +   L ++++Y+RDF ++Y G + L   Y L I+G  +E 
Sbjct: 113 ---GEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+  ++ E    A+  Y+ +S   F  ++PTLFN GT  PQLSSCFL  +
Sbjct: 170 PQHMLMRVAVGIHKEDIEA---AITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAM 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L+E A+++K +GG+G     +RG G++I GTNG S G++P L+V NDTA
Sbjct: 227 RDDSIDGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   Y+E WH DV +FLDLRKN G +  R  D+    WIPDLFM+RV 
Sbjct: 287 RYVDQGGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVE 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+LF P+E   L D +G+EFE  Y  YE++         R + A  LW  +L    
Sbjct: 347 ADKEWSLFCPNEAPGLADCWGEEFERLYLKYEQEGRSR-----RVVRAQQLWFAILEAQV 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           ETG+P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L       
Sbjct: 402 ETGNPYMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRER 461

Query: 612 -----------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                            AN  FD++KLA   +   R L+ +ID+N +   KA++SN  HR
Sbjct: 462 GSQPGWESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHR 521

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+ G      LL + + SPEA E+  +  E +   A+S S ELA+  G Y ++ GS
Sbjct: 522 PIGLGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              QGV   D  G+     D        R  W+EL+ R+   G+RNS  +A  PTA+ + 
Sbjct: 582 PVSQGVLQPDMWGVKPTGVD-------GRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQ 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++  +P   N+YV+  +SG+FTVVN  L+++L +  +W   + ++L   +GS+  +
Sbjct: 635 ILGNNECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL 694

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           E IP++LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW 
Sbjct: 695 E-IPEELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWR 753

Query: 895 MGLKT-TYYLRSRSATSVEKSTL--KGVDGKLNAVPVTDPNSSTHSLGIPS 942
            GLKT  YYLR+++A    K T+  + +  K      +   ++T  + +PS
Sbjct: 754 KGLKTGMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMKMPS 804


>gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan]
          Length = 771

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 439/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHFDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma
           gondii RH]
          Length = 855

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/845 (34%), Positives = 448/845 (53%), Gaps = 65/845 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 38  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 97

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++++ AR  ++ L +           +   +  +             G
Sbjct: 98  QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQLHGYVDKL------------G 145

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +A+L+   + +F   +   L   L Y RDF ++Y G + L   Y L I+   +E PQ  
Sbjct: 146 REAKLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHM 205

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA G+   + EK   A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D 
Sbjct: 206 LMRVACGIHCGDVEK---AIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDS 262

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+
Sbjct: 263 IDGIFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVD 322

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAG
Sbjct: 323 QGGGKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAG 382

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L +++G EF+  YE YER+         + I A  LW  +L    ETG 
Sbjct: 383 WTLMCPNECPGLTEVWGDEFKELYERYEREGRGR-----KTIPAQHLWFAILQAQIETGT 437

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P++ +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L       +  F
Sbjct: 438 PYMLYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTF 497

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           DY+ L   ++   R L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ S
Sbjct: 498 DYEHLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDS 557

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +     E I F A+ AS ELA E G Y++++GS   QG+   D  G+        
Sbjct: 558 PEARVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP------ 611

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +S
Sbjct: 612 ---SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLS 668

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +
Sbjct: 669 GEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVV 728

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T
Sbjct: 729 LDLAIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT 788

Query: 916 LK-----GVDGKLNAVPV---------------TDPNSSTHSLGIPSSC-------TSDT 948
           +          KL+   V                D   +     +   C       + D 
Sbjct: 789 VDSQLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDE 848

Query: 949 ECEVC 953
            CE+C
Sbjct: 849 PCEMC 853


>gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica]
 gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica]
          Length = 832

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/861 (33%), Positives = 447/861 (51%), Gaps = 80/861 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              LK+   DG L      ++   +++ C  L    +S   V  +    +YDG++  +L+
Sbjct: 1   MADLKVKKRDGRLEEVFFDKITSRIKKLCYNLDMNILSPLSVTRKVIDGIYDGVTTVELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++  +    P+YA + AR  +  L +E      +  +   + E            
Sbjct: 61  NLAAETAAQMSVNHPDYAILAARISVSNLHKETKKLFTEVIEDLRNVEGY---------- 110

Query: 260 IEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G K  L+ E        +   L + + ++RD+ + Y G + L   Y + I+G  IE 
Sbjct: 111 --NGKKKPLISEKTYKIVVANKDKLNSAVIHDRDYEYNYFGFKTLERSYLMKIDGKTIER 168

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+  ++ +    A+E YN +S  +F  ++PTLFNSGT  PQ+SSCFL  +
Sbjct: 169 PQHMLMRVSVGIHGEDIDA---ALETYNFMSLKYFTHASPTLFNSGTPRPQMSSCFLVAM 225

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA
Sbjct: 226 QDDSIEGIYDTLKTCALISKNAGGIGVNVHNIRARGSYIGGTNGHSNGLIPMLRVYNNTA 285

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QG  KR GA   YLE WH D+ EFLD +KNTG +  R  D+  A WIPDLFMKRV 
Sbjct: 286 RYVDQGGNKRPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLFMKRVE 345

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTLF PDE   LH+ +G+EFE  +E YE++    E      I A ALW K++    
Sbjct: 346 SNGDWTLFCPDEAPGLHECWGEEFEALFEKYEKEGRGKE-----TIKAQALWYKIIEAQI 400

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           E G P++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL S++L A    N
Sbjct: 401 EVGVPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPAFIRKN 460

Query: 615 Q-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+  L    +   R L+ VIDIN + +E+A+ SN  HR IG+G+ G      +
Sbjct: 461 DQGFSVYDFQDLYDKTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLADTFCM 520

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG------------SLWD 717
           L + + S EA  +  +  E I F A+ AS ELA++ G Y SF+             S   
Sbjct: 521 LKLAFESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNPDSPMA 580

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           QG F  D  G+            T    WD L+++V   G+RNS  ++  PTA+ A I G
Sbjct: 581 QGKFQFDLWGVTP----------TDLWDWDSLREKVTRHGVRNSLLVSPMPTASTAQILG 630

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++SI+P   N+Y +  +SG+F VVN  L+ EL + + WD+ +   +   +GSI N++ I
Sbjct: 631 NNESIEPFTNNIYTRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQNLD-I 689

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P D+K+ + T +EI    +++ A+ R  +IDQ+QSLN+++ +P    L  ++   W MGL
Sbjct: 690 PADIKERYRTVWEIKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTGWKMGL 749

Query: 898 KT-TYYLRSRSATSVEKSTL----------KGVDGKLNAV--------------PVTDPN 932
           KT  YYLR++ A +  K T+          + V+ K+ A               P  D  
Sbjct: 750 KTGMYYLRTKPAAAAIKFTVDKSKVKVEEKENVEVKIEAATKSPVKAVSSLKEGPSEDDI 809

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
              +   +  S  +   C +C
Sbjct: 810 RRLNEAALVCSLENKEACMMC 830


>gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit
           [Neospora caninum Liverpool]
          Length = 886

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/853 (34%), Positives = 445/853 (52%), Gaps = 73/853 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 61  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 120

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++K+ AR  ++ L +          ++   +  +             G
Sbjct: 121 QTSAYMAASHPDFSKLAARIAIDNLHKNTTDNFLTVIEQLHGYVDKL------------G 168

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +A+L+   + +F   +   L   L Y RDF ++Y G + L   Y L I+   +E PQ  
Sbjct: 169 REAKLVSTEVYEFVKANEKALNEALNYSRDFEYDYFGFKTLERSYLLKIHDRIVERPQHM 228

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA G+     E   RAVE Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D 
Sbjct: 229 LMRVACGIHCGNVE---RAVETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDS 285

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+
Sbjct: 286 IDGIFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVD 345

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAG
Sbjct: 346 QGGGKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAG 405

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  P+E   L +++G+EF+  YE YER+         + I A  LW  +L    ETG 
Sbjct: 406 WTLMCPNECPGLTEVWGEEFKELYERYEREGRGR-----KTIPAQHLWFAILQAQIETGT 460

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--F 616
           P++ +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L          F
Sbjct: 461 PYMLYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRETRTF 520

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           DY+ L   ++   R L+ VID N + + +AK SN  HR +GLG+ G   A  LL  P+ S
Sbjct: 521 DYEHLKKIVKVMTRNLNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDS 580

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +     E I + A+ AS ELA E G Y++++GS   QG+   D  G+        
Sbjct: 581 PEARLLNRNIFECIYYAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTP------ 634

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    W  L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +S
Sbjct: 635 ---SSGLCDWSALREKIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLS 691

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +RDLW E +   L  H+G + N++ IPDDLK ++ T +EI    +
Sbjct: 692 GEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVV 751

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T
Sbjct: 752 LDLAIDRSPYIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFT 811

Query: 916 LK----------------------------GVDGKLNAVPVTDPNSSTHSLGIPSSC--- 944
           +                               + K   V   DP  +  +      C   
Sbjct: 812 VDSQLAMSAKAKLSGSTFSGVLTTTTSSAADEETKRQDVGSADPVETARTEASGPVCRWR 871

Query: 945 ----TSDTECEVC 953
               + D  CE+C
Sbjct: 872 PKGASPDEPCEMC 884


>gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus]
 gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus]
          Length = 771

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
 gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
          Length = 838

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/807 (34%), Positives = 431/807 (53%), Gaps = 32/807 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYTGVTTQELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  +  +YA + AR  +  L +E         +K     M  LY         +
Sbjct: 61  AETAATLTTEHADYAILAARLAVSNLHKET--------KKHFSDVMADLYNMENEFLKTK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++  +   L + + Y+RDF + Y G + L   Y L I G  +E PQ   M
Sbjct: 113 SPMISDEHYKIIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + +    A+E YNLLS  +F  ++PT+F + TR PQLSSCFL T+  D + 
Sbjct: 173 RVAVGIHGLDIDA---AIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  W 
Sbjct: 290 GNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWC 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L + +G+EFE  Y  YE +         RK+ A  LW  ++    ETG P+
Sbjct: 350 LMCPHDCPGLPETWGEEFEKLYTTYENEGR-----YIRKVKAQDLWFAIIESQVETGVPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI +      +  +D+ 
Sbjct: 405 MLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKPDKSYDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   + L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S EA
Sbjct: 465 KLKEVSKIVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS E+A++ G Y ++ G    +G+   D               
Sbjct: 525 QKLNQQIFETIYYGALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W  LK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F
Sbjct: 576 -SDLWDWAPLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L + +LWD+ M + +   +GSI +I+ IP  +++++ T +EI     I+ 
Sbjct: 635 QVVNHHLLKDLTELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+  
Sbjct: 695 AADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           V             S + S+ +  S T
Sbjct: 755 VKLGQTQSAQNGTTSPSKSMLMNGSST 781


>gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus]
 gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96]
          Length = 771

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 440/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS]
          Length = 771

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/787 (34%), Positives = 439/787 (55%), Gaps = 38/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G      LL+ P+ S 
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKL 923
                K 
Sbjct: 751 DKDKIKP 757


>gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit
           [Cryptosporidium muris RN66]
 gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Cryptosporidium muris RN66]
          Length = 809

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/836 (33%), Positives = 452/836 (54%), Gaps = 52/836 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLE 199
           +A ++ ++   G     +  ++   + +   GL   V    V       MY G+  S+L+
Sbjct: 1   MAERMYVINRRGKEEPVSFDQILSRISKLSYGLHPLVDPARVAQAVINGMYSGIKTSELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                +   +    P+++K+ AR  +  L +   + +++   +    +            
Sbjct: 61  ELASQTCAYMAASHPDFSKLAARISISNLHKNTHSDIFEVANQLISFKDV---------- 110

Query: 260 IEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              G  A LL +++ +F +     L + + + RDF ++Y   + L   Y L ++   +E 
Sbjct: 111 --HGNPAPLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFKTLERSYLLRVDDKIVER 168

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV+ G+     +    A+E Y LLS  +F  +TPTLFN+GT  PQ+SSCF+  +
Sbjct: 169 PQHLLMRVSCGIHYGNIDA---AIETYELLSQKYFTHATPTLFNAGTLRPQMSSCFILKM 225

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GIF  L++ A ++K +GGLG   + +R  G++I GTNG+S G+IP L+V NDTA
Sbjct: 226 SDDSIDGIFDTLKKCANISKTAGGLGVAISNIRAAGSYIRGTNGRSNGLIPMLRVYNDTA 285

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA+  YLE WH D+ EF+++RKN G +  R  D+  A WIPDLFM+RV 
Sbjct: 286 RYVDQGGGKRKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVE 345

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++A WTL  PDE   + D++G +F+  YE+YE++         + I A +LW  +L    
Sbjct: 346 KDANWTLMCPDECPGMQDVWGDQFKELYEHYEKEGRGR-----KTIKAQSLWFALLQSQI 400

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--A 612
           ETG P+I +KD  N +S QQ++G + SSNLCTEI   +SS+E AVCNL SI L       
Sbjct: 401 ETGTPFICYKDAANRKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLASIGLPRFVDRE 460

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N +FD+ KL   ++ A+R L+ VID   + I + ++SN  HR +GLG+ G      +L  
Sbjct: 461 NKKFDFKKLYEVVKVAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQGLADCFMILRY 520

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S +A ++  E  E I + A+ AS ELA++ G Y +F+GS   +G+   D   +    
Sbjct: 521 PYESKDARKLNIEIFETIYYAALDASCELAEKYGPYETFQGSPASRGLLQFDLWNVQP-- 578

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   +    WD LK+++   G+RNS  +A  PTA+ + + G ++S +P   N+Y +
Sbjct: 579 -------SSGLWNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNIYHR 631

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN  L+N+L +  LWDE +  ++  ++GS+ NIE IP D++ ++ T +EI 
Sbjct: 632 RVLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDIRDLYKTVWEIR 691

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A+ R  +I Q+QSLN+Y+   +  KL  ++   W  GLKT +YYLR++SA + 
Sbjct: 692 QKAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSAANP 751

Query: 912 EKSTL------------KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS--DTECEVC 953
            + T+            K  D K  A+  +        +  P    +    EC +C
Sbjct: 752 IQFTIDQQLLKSTADKNKEQDAKRPALQNSSQGDGRSVMACPLRPANLQGEECLMC 807


>gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO]
          Length = 887

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/815 (32%), Positives = 417/815 (51%), Gaps = 40/815 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L
Sbjct: 13  TPTQMYVIKRDGXKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVEL 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++   
Sbjct: 73  DNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPM 131

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +E     +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ
Sbjct: 132 ISDEIYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  
Sbjct: 185 HLVMRVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  
Sbjct: 242 DSIEGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARY 301

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++
Sbjct: 302 VDQGGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQED 361

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ET
Sbjct: 362 GPWTLFSPSXAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTET 415

Query: 557 GHPWITF-KDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           G+ +  F KD C      Q ++G + SSNLC EI   SS +ETAVCNL SI L A     
Sbjct: 416 GNTFPWFYKDACKQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVS 475

Query: 612 ---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      
Sbjct: 476 EDGKTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTXM 535

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D    
Sbjct: 536 MLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNA 595

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                            W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N
Sbjct: 596 KP----------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSN 645

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T 
Sbjct: 646 MYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTV 705

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++
Sbjct: 706 WEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQA 765

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           A++  + T+        A  +   +     + +P 
Sbjct: 766 ASAAIQFTIDQEVADQAATHIASVSELDRPVYVPK 800


>gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16]
 gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16]
          Length = 771

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/790 (35%), Positives = 441/790 (55%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G +I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPRLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SP
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIAQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAV 926
                K   V
Sbjct: 751 DKDKIKPQVV 760


>gi|126327914|ref|XP_001363871.1| PREDICTED: similar to LOC505537 protein [Monodelphis domestica]
          Length = 804

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/831 (34%), Positives = 446/831 (53%), Gaps = 51/831 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMEFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPYNSK- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 112 --HSPMVAKSTLDVVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHKDDIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L D++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDDVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L       + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D   +        
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAP------ 575

Query: 737 AMNRTSRLPWDELKKRVKTI---GMRNSNCMAIA---PTATIANICGVSQSIDPSYQNLY 790
               T    W  LK+++      G+RN   +      P+    +    S+ + P   +L 
Sbjct: 576 ----TDLWDWKVLKEKIAKYLDGGIRNELLITAGHYKPSTNTLSFLSNSEFLSPKLGSLG 631

Query: 791 VKSNMSGD-------FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           +    S           +VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+
Sbjct: 632 LSYTCSFYCFISHHFVQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQ 691

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           ++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YY
Sbjct: 692 LYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYY 751

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LR+R A +  + TL     K     + D     ++  +  S  +  EC +C
Sbjct: 752 LRTRPAANPIQFTLNKEKLKEKEKVLKDEEKERNTAAMVCSLENRDECLMC 802


>gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens]
          Length = 787

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/822 (34%), Positives = 437/822 (53%), Gaps = 50/822 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIKKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             ++  +  + P+++ + AR  +  L +   +  + V +K  K  H + +          
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTKKP-----AAL 115

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           I +   A +            +   + Y+RDF ++Y G + L   Y + ++G+  E PQ 
Sbjct: 116 ISDETYATVQKHK------DAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MIMRVALGIHG---DDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYIRGSNGTSNGIVPMLRVYNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N 
Sbjct: 287 DQGGGKRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L D +G EFE  YE YE +         + I A  LW  +L    ETG
Sbjct: 347 SWSLMCPNECPGLADCHGAEFEALYERYEAEGRAR-----KAIPAQQLWFAILDSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P++ +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL AH       
Sbjct: 402 TPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDA 461

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+ KL  T     + L+ VID+N + +E+AK SN  HR IG+G+ G   AL  L  P
Sbjct: 462 ATFDFAKLKRTAYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S +A  I  +  E I F A+ AS++LA+E G Y S++GS   QG+F  D   +     
Sbjct: 522 YESDDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFDLWNVKP--- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y + 
Sbjct: 579 -------SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRR 631

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L  R LW   + + +    GS+  +  IPDDLK ++ T +EI  
Sbjct: 632 VLAGEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQ 691

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R      
Sbjct: 692 KCVLDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAI 751

Query: 913 KSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             T+ + +  K        P +             + EC  C
Sbjct: 752 AFTVDQAMAAKSRGGAALKPANGQQ--------EEEHECLSC 785


>gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 854

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/857 (33%), Positives = 448/857 (52%), Gaps = 72/857 (8%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
                K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y G++  
Sbjct: 26  ESPRGKMHVIKRNGRKEDVHFDKITSRIVKQCYNLDMNYVDPSAVAIQVIRGLYSGVTTV 85

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+     ++ T+  K P+YA + AR  +  L +E         +K+    M  L   ++
Sbjct: 86  VLDNLAAETAATMATKHPDYAILAARIDVSNLHKET--------KKSFSEVMHDL---HY 134

Query: 257 CRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
            +         ++ +        +   L + + Y+RDF + Y+G + L   Y L ING  
Sbjct: 135 AKNPVTNHYNPIISKHYYNIIKNNAEKLDSAIIYDRDFNYNYIGFKTLERSYLLKINGKI 194

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ   MRVA+G+     +K    +E YN LS  +F  ++PTLFN+ T + Q+SSCFL
Sbjct: 195 VERPQHMLMRVAVGIHENNIDK---VIETYNYLSERYFTHASPTLFNACTNNQQMSSCFL 251

Query: 374 TTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
            T+ DD +  IFG L+  A+++KY+GG+G +   +R        T  ++ G+I  LK+ N
Sbjct: 252 LTLEDDSIKSIFGTLKNCALISKYAGGIGLNVHCIRAKNVEDTSTK-RTNGLISILKLYN 310

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           D A+ V+QG  KR GA   YLE WH D+ +FL+L++N GD   R  D+    WIPDLFM+
Sbjct: 311 DMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELKRNIGDGNMRARDLFYGLWIPDLFME 370

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  +  W+L  P E   L D++G EF+  Y  YE++         +++ A ++W  +L 
Sbjct: 371 RVYNDEMWSLMCPHESPGLSDVWGDEFKELYTRYEKEGR-----YKKQVEARSVWLAILR 425

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLA 609
              ETG P++ +KD CN +S  QH+G V  SNLCTEI   S   E AVCNL SI  N+  
Sbjct: 426 SQVETGTPYMLYKDHCNRKSNHQHIGTVKCSNLCTEIIEYSGPGEVAVCNLASIAVNMFV 485

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +     FD+DKL +  +   R LD VID+N + IE+ + SNH HR IG+G+ G   A  L
Sbjct: 486 NIDTKIFDFDKLKTVAKIVTRNLDKVIDVNFYPIEETRTSNHRHRPIGIGIQGLADAFLL 545

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ S EA E+  +  E + + A+ AS ELA E+G Y +++GS   +G+   D   + 
Sbjct: 546 MRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYQGSPVSKGILQYDMWNVK 605

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T+   WDELK ++   G+RNS  +A  PTA+ A I G ++SI+P   N+
Sbjct: 606 P----------TNLWDWDELKAKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNI 655

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F +VN  L+ +L  R LWDE M +++  + GS+ NIERIPDDLK+++ T +
Sbjct: 656 YVRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEILANFGSVQNIERIPDDLKELYKTVW 715

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    ++E A+ R  ++DQ+QSLN+++ +P+ +KL  ++   W  GLKT  YYLR++ A
Sbjct: 716 EIPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEKLTSMHFFGWKSGLKTGMYYLRTKPA 775

Query: 909 TSVEKSTLKGVD---------------GKLNAVPVTDPNSSTHSLG-------------- 939
            +  + T+                     +N+ P+  PN  +                  
Sbjct: 776 ANPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPIQSPNQDSDDDAEKRKQLSTQARKNL 835

Query: 940 ---IPSSCTSDTECEVC 953
              +  S  +  +C  C
Sbjct: 836 DAMLACSRKNKEDCMAC 852


>gi|18266787|sp|O61065|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum]
 gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium
           parvum]
          Length = 803

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/830 (33%), Positives = 448/830 (53%), Gaps = 50/830 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V    V       +Y G+  S+L+    
Sbjct: 1   MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +     +++K+ AR     L +             T  ++  +  + +     +G
Sbjct: 61  QTCAYMAATHNDFSKLAARISTSNLHK------------NTSSDIGDVASQLYNFKDNQG 108

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+ + + DF   +   + + + + +DF ++Y   + L   Y L I+   +E PQ  
Sbjct: 109 CPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHL 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            MRV+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  PQ+SSCFL  +P D 
Sbjct: 169 LMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDS 225

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L + A ++K +GGLG   + +RG G++I GTNG+S G+IP L+V NDTA  ++
Sbjct: 226 INGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYID 285

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  
Sbjct: 286 QGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQD 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  PDE   L D++G +F+  YE YE+Q         + + A  LW  +L    ETG 
Sbjct: 346 WTLMCPDECRGLQDVWGDDFKKLYEEYEKQGRGR-----KTMKAQKLWFLILQAQIETGT 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQF 616
           P+I +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL SI L       N  F
Sbjct: 401 PFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTF 460

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+DKL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ G      +L +PY S
Sbjct: 461 DFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYES 520

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             A ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +     
Sbjct: 521 EGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD----- 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +S
Sbjct: 576 ----SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +
Sbjct: 632 GEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T
Sbjct: 692 IDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFT 751

Query: 916 LK----GVDGKLNAVPVTDPNSSTHSLGI--------PSSCTSDTECEVC 953
           +       + K      T+   +              P++   D EC +C
Sbjct: 752 VDQQLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801


>gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
 gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
          Length = 804

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/830 (33%), Positives = 448/830 (53%), Gaps = 50/830 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V    V       +Y G+  S+L+    
Sbjct: 2   MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +     +++K+ AR     L +             T  ++  +  + +     +G
Sbjct: 62  QTCAYMAATHNDFSKLAARISTSNLHK------------NTSSDIGDVASQLYNFKDNQG 109

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+ + + DF   +   + + + + +DF ++Y   + L   Y L I+   +E PQ  
Sbjct: 110 CPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHL 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            MRV+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  PQ+SSCFL  +P D 
Sbjct: 170 LMRVSCGIHCGDIEA---ALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDS 226

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  L + A ++K +GGLG   + +RG G++I GTNG+S G+IP L+V NDTA  ++
Sbjct: 227 INGIFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYID 286

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  
Sbjct: 287 QGGGKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQD 346

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL  PDE   L D++G +F+  YE YE+Q         + + A  LW  +L    ETG 
Sbjct: 347 WTLMCPDECRGLQDVWGDDFKKLYEEYEKQGRGR-----KTMKAQKLWFLILQAQIETGT 401

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQF 616
           P+I +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL SI L       N  F
Sbjct: 402 PFICYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+DKL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ G      +L +PY S
Sbjct: 462 DFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYES 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             A ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +     
Sbjct: 522 EGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD----- 576

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +S
Sbjct: 577 ----SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLS 632

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +
Sbjct: 633 GEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTV 692

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T
Sbjct: 693 IDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFT 752

Query: 916 LK----GVDGKLNAVPVTDPNSSTHSLGI--------PSSCTSDTECEVC 953
           +       + K      T+   +              P++   D EC +C
Sbjct: 753 VDQQLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 802


>gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum
           PN500]
          Length = 868

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/831 (34%), Positives = 432/831 (51%), Gaps = 39/831 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYK 187
           + SK  +    K+ ++  DGT  S    ++   ++  C        + +    V  +   
Sbjct: 9   NTSKEQSTPNSKMYVIKRDGTKASVQYDKITQRLQSLCDLEPKLNGEVIDPSEVTQKVAS 68

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++ G+  ++L+     ++  +  K P+Y  + AR  +  L ++  ++  +  +K  H  
Sbjct: 69  GVFPGVKTTELDNLAAETAAYMSTKHPDYGVLAARISVSNLHKQTSSSFLETVEKQ-HSF 127

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                 +      +E      +H          L   + Y RDF +++ G + L   Y  
Sbjct: 128 TNPKTGQPAPLVSDELYNLVKIHHK-------RLEEAIDYRRDFEYDFFGFKTLERSYLH 180

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            IN   IE PQ   MRV++G+   + +    A+E YNLLS   F  +TPTLFNSGT  PQ
Sbjct: 181 RINDIIIERPQQMLMRVSIGIHGDDID---SAIETYNLLSQRLFTHATPTLFNSGTPSPQ 237

Query: 368 LSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +SSCFL  +  D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P
Sbjct: 238 MSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLVP 297

Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+
Sbjct: 298 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWV 357

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            DLFM+RV  +  W LF P+E   L D +G EF   YE YE           R I A  L
Sbjct: 358 SDLFMERVENDDVWNLFCPNEAPGLADCWGDEFRALYEKYENTPGLSR----RTIKAQDL 413

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P+  +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI
Sbjct: 414 WFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLASI 473

Query: 606 NLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            L  +   N      +FD+  L    +T  R L+ +ID N + + +A+ SN  HR IG+G
Sbjct: 474 ALPKYVRENKETGKPEFDHQYLFEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGIG 533

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G       L +P+ S  A  +  E  E I F A++AS ELA+  G Y SFKGS   +G
Sbjct: 534 IQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPASKG 593

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               D   +            + R  W  LK+++ + G+RNS  +A  PTA+ + I G +
Sbjct: 594 TLQQDFWNVTP----------SPRWDWTSLKQKIISTGLRNSLLIAPMPTASTSQILGNN 643

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           ++ +P   N+Y +  ++G+FTVVN  L+ +L   DLW   M + +  H GSI NIE IPD
Sbjct: 644 EAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAHRGSIQNIEDIPD 703

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+ +KL  ++  AW  GLKT
Sbjct: 704 DLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTSMHFYAWKKGLKT 763

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             YYLR+R+A    + T+             +  ++      PS+      
Sbjct: 764 GMYYLRTRAAADAIQFTVDQTMLANKEQKDANATATADGAQPPSTPIRTPT 814


>gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/817 (33%), Positives = 439/817 (53%), Gaps = 32/817 (3%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
            KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   ++ 
Sbjct: 10  DKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDN 69

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++  L  K P++A + AR  +  L +E         +      +  LY     R  
Sbjct: 70  LAAETAAYLTTKHPDFAVLAARIAISNLYKET--------KNNFSDVIYDLYNMSNERNQ 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
                    H  ++      L N +K++RD+ + Y G + L   Y L ING  +E PQ  
Sbjct: 122 RRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERPQHL 181

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            MRV++G+  ++ +    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL     D 
Sbjct: 182 LMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANKSDS 238

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA-HIHGTNGKSQGVIPFLKVANDTAVAV 438
           L      ++  A +++ SGG+G     +   G         +S G++  LKV ND A  V
Sbjct: 239 LEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLAQYV 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+RV  N  
Sbjct: 299 DQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQS 358

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T   ETG 
Sbjct: 359 WSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIETGM 413

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI +      N ++D
Sbjct: 414 PYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNGEYD 473

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+  P+ SP
Sbjct: 474 FEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPFGSP 533

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D   +         
Sbjct: 534 ESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNVKP------- 586

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  +SG
Sbjct: 587 ---TDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSG 643

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E+    ++
Sbjct: 644 EFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQKIIL 703

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    + T+
Sbjct: 704 DMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTV 763

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                  N    T+ N +     +  S  +   C +C
Sbjct: 764 NKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 802

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/817 (33%), Positives = 439/817 (53%), Gaps = 32/817 (3%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
            KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   ++ 
Sbjct: 10  DKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQIDN 69

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++  L  K P++A + AR  +  L +E         +      +  LY     R  
Sbjct: 70  LAAETAAYLTTKHPDFAVLAARIAISNLYKET--------KNNFSDVIYDLYNMSNERNQ 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
                    H  ++      L N +K++RD+ + Y G + L   Y L ING  +E PQ  
Sbjct: 122 RRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERPQHL 181

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            MRV++G+  ++ +    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL     D 
Sbjct: 182 LMRVSIGIHGEDIDA---AIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANKSDS 238

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA-HIHGTNGKSQGVIPFLKVANDTAVAV 438
           L      ++  A +++ SGG+G     +   G         +S G++  LKV ND A  V
Sbjct: 239 LEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLAQYV 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+RV  +  
Sbjct: 299 DQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEADQS 358

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T   ETG 
Sbjct: 359 WSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIETGM 413

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI +      N ++D
Sbjct: 414 PYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNGEYD 473

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+  P+ SP
Sbjct: 474 FEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPFGSP 533

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D   +         
Sbjct: 534 ESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNVKP------- 586

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  +SG
Sbjct: 587 ---TDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSG 643

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E+    ++
Sbjct: 644 EFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQKIIL 703

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    + T+
Sbjct: 704 DMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTV 763

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                  N    T+ N +     +  S  +   C +C
Sbjct: 764 NKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/790 (34%), Positives = 440/790 (55%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y   + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG  R G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SP
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+  A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750

Query: 917 KGVDGKLNAV 926
                K   V
Sbjct: 751 DKDKIKPQVV 760


>gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens]
          Length = 793

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/824 (33%), Positives = 433/824 (52%), Gaps = 44/824 (5%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESD 197
                ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +
Sbjct: 2   SADDDMQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHE 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     ++  +  + P+++ + AR  +  L +    T     +K  H  M     +   
Sbjct: 62  LDELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEKL-HKHMHPKTKKPAA 120

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
              +E       H+         +   + YERDF ++Y G + L   Y + ++G+  E P
Sbjct: 121 LISDETYATVQKHK-------DAINAAIVYERDFEYDYFGFKTLERSYLMRLDGAIAERP 173

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + 
Sbjct: 174 QHMIMRVALGIHG---DDLAAALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMK 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA 
Sbjct: 231 EDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTAR 290

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  
Sbjct: 291 YVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEA 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L D +G EFE  YE YE +         + I A  LW  +L    E
Sbjct: 351 NGFWSLMCPNECPGLADCHGAEFEALYERYEAEGRAR-----KAIPAQQLWFAILDSQVE 405

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG P++ +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H     
Sbjct: 406 TGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAG 465

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L 
Sbjct: 466 DAATFDFAKLKRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLR 525

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D   +   
Sbjct: 526 HPYESDDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWNVKP- 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 585 ---------SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYT 635

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  ++G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI
Sbjct: 636 RRVLAGEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEI 695

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R    
Sbjct: 696 KQKCVLDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKAD 755

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVC 953
               T+           +   +    +L + +   ++  EC  C
Sbjct: 756 AIAFTVDQA--------MAAKSRGGAALELANGQEAEEHECLSC 791


>gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens]
          Length = 787

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/819 (33%), Positives = 430/819 (52%), Gaps = 44/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K  H  M     +      +E
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEKL-HKHMHPKTKKPAALISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H+         +   + Y+RDF ++Y G + L   Y + ++G+  E PQ   M
Sbjct: 120 TYATVQKHK-------DAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     +    A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVALGIHG---DDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N  W+
Sbjct: 290 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  YE YE +         + I A  LW  +L    ETG P+
Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYEAEGRAR-----KAIPAQQLWFAILDSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H         F
Sbjct: 405 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L  PY S
Sbjct: 465 DFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D   +        
Sbjct: 525 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWNVKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N++ +  ++
Sbjct: 579 ----SDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI    +
Sbjct: 635 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R        T
Sbjct: 695 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-ECEVC 953
           +           +   +    +L   +    +  EC  C
Sbjct: 755 VDQA--------MAAKSRGGAALEPANGQELEEHECLSC 785


>gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 898

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/925 (32%), Positives = 455/925 (49%), Gaps = 151/925 (16%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSS------------------------------ 178
           DG   + +  ++   V++ C GL    V                                
Sbjct: 1   DGRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQ 60

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +  +  + +Y G++ ++L+T    ++ TL  K P+YA + AR  +  L +E       
Sbjct: 61  AQITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET------ 114

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE---SMMDFDLVYLANDLKYERDFAFEY 295
             +K     M+ LY           + + ++ +    ++  +   L + + Y+RDF++ +
Sbjct: 115 --KKVFSDVMEDLYNYVNPLN---KLHSPMISKETLHIIRENKARLNSAIIYDRDFSYNF 169

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L ING   E PQ   MRVA+G+   + E    A+E YNLLS   F  ++
Sbjct: 170 FGFKTLERSYLLKINGKVAERPQHMLMRVAVGIHQADMEA---AIETYNLLSERWFTHAS 226

Query: 356 PTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT   QLSSCFL T+  D + GI+  L++ A+++K +GG+G   + +R  G++I
Sbjct: 227 PTLFNAGTNRSQLSSCFLLTMKDDSIEGIYDTLKQCALVSKSAGGIGLAVSCIRATGSYI 286

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGG-----------------------------KRK 445
            GTNGKS G++P L+V N+TA  V+QGG                             +R 
Sbjct: 287 AGTNGKSNGLVPMLRVYNNTARYVDQGGNKVRMKVGEQTASRLRNIRDVIQVWLFLGQRP 346

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P 
Sbjct: 347 GAFAVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPS 406

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E   L D +G+EFE  Y  YE++         R + A  LW  ++    ETG P++ +KD
Sbjct: 407 ECPGLTDCWGEEFEELYTRYEKEGR-----AKRVVKAQQLWYAIIESQTETGTPYMLYKD 461

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAST 624
            CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L  +      +D+ KLAS 
Sbjct: 462 ACNRKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFHKLASV 521

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +T V+ L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY SPEA  +  
Sbjct: 522 TKTIVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNT 581

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A+ AS ELA E G Y ++ GS   +GV   D  G             T   
Sbjct: 582 QIFETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWGKTP----------TDLW 631

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF----- 799
            W  LK+++   G+RNS  +A  PTA+ A I G ++S +    N+Y +  +SG+F     
Sbjct: 632 DWTALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTR 691

Query: 800 --------------------TVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-------- 831
                                +VN  L+ +L +R LW + M + L  H+GSI        
Sbjct: 692 AFRPSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICC 751

Query: 832 ---------------------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                 NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+
Sbjct: 752 ISSTISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQS 811

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPV 928
           QSLN+++ EP+  KL  ++   W +GLKT  YYLR++ A +  + TL K    +  A   
Sbjct: 812 QSLNIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLKEAQAARS 871

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVC 953
            + +   ++  +  S  +  EC +C
Sbjct: 872 EEESKERNAAAVVCSLANKDECMMC 896


>gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 797

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/825 (32%), Positives = 440/825 (53%), Gaps = 46/825 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +   C GL    V   ++  +    +Y G++ S+L+   
Sbjct: 1   MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+ + + AR  +  L +           K     ++ L+        + 
Sbjct: 61  AQTAAYQATQHPDMSLLAARISVSNLHKCTW--------KTFSKTIEMLHTYVLP---QT 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G ++ L+ + +      +   L + ++ ERDF ++Y G + L   Y L  NG  +E  Q 
Sbjct: 110 GERSSLISDEVFRIVMENKEVLDSAIQDERDFEYDYFGFKTLEKSYLLRANGFVVERIQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E Y+L+S   F  ++PTLFN+GT  PQLSSCFL  V  D
Sbjct: 170 MLMRVAIGIHQTDID---SAIESYDLMSQRLFTHASPTLFNAGTPRPQLSSCFLLNVKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G     +R   +++ G+NG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKQCACISKFAGGIGVSIHSIRATDSYVAGSNGSSNGLVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   Y E WH D+  FLDLRKN G++  R  D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGGKRKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D++G EFE  Y++YE +         R I A  LW  ++    ETG
Sbjct: 347 DWSLFCPNEAPGLPDVFGDEFEALYKSYEAKGLAR-----RSIKARQLWVAIMDAQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ FKD CN +S Q+++G + SSNLCTEI   +  +E AVCNL SI+L A  +  +  
Sbjct: 402 TPYMLFKDACNSKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDG 461

Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD+ +L    +   R L+ VID+N + +E+AK+SN  HR +GLG+ G   A  ++  
Sbjct: 462 QPAFDFHRLYEVTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRF 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S +A ++  +  E I F A+ ASVELA+++G Y +++GS   QG+   D  G+    
Sbjct: 522 PFESEKAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTP-- 579

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W  LK ++   G+RNS  +A  PTA+ A I G ++S++P   N+Y +
Sbjct: 580 --------SDRWDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNR 631

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F VVN  L+ +L  R LW  ++ + +    GS+  ++ IP DLK ++ T +EI 
Sbjct: 632 RVLAGEFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIK 690

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ ++ R  +I Q+QS+N+++ +P+  KL  ++  +W  GLKT  YYLR++     
Sbjct: 691 QKVVIDMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTKPKAHA 750

Query: 912 EKSTLKG---VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            + T+              +             +    D EC  C
Sbjct: 751 IQFTVDQESLAAAVREQALLRREGKGGDESAKANEEEDDGECLTC 795


>gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/790 (34%), Positives = 439/790 (55%), Gaps = 38/790 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y   + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG  R G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SP
Sbjct: 462 FLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSP 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+  A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTL 750

Query: 917 KGVDGKLNAV 926
                    V
Sbjct: 751 DKDKXXPQVV 760


>gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 849

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/853 (32%), Positives = 445/853 (52%), Gaps = 59/853 (6%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYD 191
              +      K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y 
Sbjct: 21  KMPAKEVARGKMHVIKRNGRKEDVHFDKITSRIAKQCYSLNMNYVDPSAVAIQVIRGLYS 80

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G++  +L+     ++ T+  + P+YA + AR  +  L +E         +K+    M  L
Sbjct: 81  GVTTVELDNLAAETAATMATQHPDYAILAARIDVSNLHKET--------KKSFSEVMHDL 132

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           +        E        + +++  +   L + + Y+RDF + Y+G + L   Y L ING
Sbjct: 133 HYARDPITNEPNPVISEHYYNIIKRNAERLDSAIIYDRDFNYNYMGFKTLERSYLLKING 192

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             +E PQ   MRVA+G+   +  K    +E Y+ LS  +F  ++PTLFN+ T++ Q+SSC
Sbjct: 193 KIVERPQHMLMRVAVGIHEDDINK---VIETYDYLSERYFTHASPTLFNACTKNQQMSSC 249

Query: 372 FLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           FL T+  D + GI+G L++ A+++KY+GG+G +   +R            + G+I  LK+
Sbjct: 250 FLLTLNDDSIKGIYGTLKKCALISKYAGGIGINVHCIRAKDTDDTYDTDATNGLISVLKL 309

Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            ND A+ V+QG  KR GA   YLE WH D+ +FL+L++N GD   R  D+  A W+PDLF
Sbjct: 310 YNDIAIYVDQGGNKRPGAFAVYLEPWHADIFDFLELKRNIGDGNLRARDLFYALWVPDLF 369

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV  +  W+L  P E   L D++G EF   Y  YE++         R++ A  +W  +
Sbjct: 370 MERVFDDEVWSLMCPYESPGLADVWGDEFNELYTRYEKEGR-----YKRQVQARDVWVTI 424

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607
           L    ETG P++ +KD CN +S  QH+G +  SNLCTEI   SS EE AVCNL SI  N+
Sbjct: 425 LRSQVETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTEIVEYSSPEEVAVCNLASIALNM 484

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
             +     FD+DKL + ++   R LD VID+N + I + K+SN  HR IG+G+ G   A 
Sbjct: 485 FVNTNKKTFDFDKLKTVVKIVTRNLDKVIDVNFYPIPETKRSNRRHRPIGIGVQGLADAF 544

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L+  P+ S EA E+  +  E + + A+ AS ELA E+G Y +++GS   +G+   D   
Sbjct: 545 LLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMWN 604

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +            T    WDELK ++   G+RNS  +A  PTA+ A I G ++SI+    
Sbjct: 605 VKP----------TDLWDWDELKTKIAKHGVRNSLLIAPMPTASTAQILGNNESIEAYTS 654

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N+YV+  +SG+F ++N  L+ +L  R LW + M +++  + GS+ NIERIPDDLK+++ T
Sbjct: 655 NIYVRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANFGSVQNIERIPDDLKELYKT 714

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +EI    ++E A+ R  +IDQ+QSLN+++ +PS +KL  ++   W  GLKT  YYLR++
Sbjct: 715 VWEISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSMHFFGWRSGLKTGMYYLRTK 774

Query: 907 SATSVEKSTLKGVD----------GKLNAVPVTDPNSSTHSLG----------------I 940
            A +  + T+                  + P+  P+    +                  +
Sbjct: 775 PAANPIQFTVDKSKLQSRDSLSSSTSDISSPIKSPDKDADNSEKRNLINQQANKNLEAML 834

Query: 941 PSSCTSDTECEVC 953
             +  +   C  C
Sbjct: 835 ACARENKDACMAC 847



 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 14 AFPSLAYPFPEKIKG-VQVIKRNGGV--TSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
          + P    P  E  +G + VIKRNG      FD  KI+  I K   ++       S     
Sbjct: 16 SRPLAKMPAKEVARGKMHVIKRNGRKEDVHFD--KITSRIAKQCYSLNMNYVDPSAVAIQ 73

Query: 71 IIKNLTEQTVTRLLQH 86
          +I+ L     T  L +
Sbjct: 74 VIRGLYSGVTTVELDN 89


>gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum]
          Length = 942

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/806 (33%), Positives = 429/806 (53%), Gaps = 48/806 (5%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLS 183
           R     +  + P + +L         I     ++   ++  C          +    +  
Sbjct: 79  RDGTRVAVCNRPTSTQLYFYK---KEIDVKYDKITTRLQYLCDLEPKLDTNIIDPSEITQ 135

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           +    ++ G+  ++L+     ++  +  K P+YA + AR  +  L ++   +  +  +  
Sbjct: 136 KVASGVFPGVKTTELDNLAAETAAYMSTKHPDYAVLAARIAVSNLHKQTHESFLETVKLQ 195

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQI 300
             +              + G  A L+ + ++   +  +  +   +KY RDF +++ G + 
Sbjct: 196 HGYVSP-----------KTGAPAPLVSDEILALANKHVDRIEAAIKYTRDFEYDFFGFKT 244

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y   +N   IE PQ   MRV++G+   + +    A++ Y+ LS+ +F  +TPTLFN
Sbjct: 245 LERSYLHRVNDMIIERPQHLLMRVSLGIHGDDIDA---AIDTYDQLSNRYFTHATPTLFN 301

Query: 361 SGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +GT  PQ+SSCFL  +  D + GI+  L++ A+++K +GG+G     +R   ++I GTNG
Sbjct: 302 AGTNSPQMSSCFLVQMKDDSIEGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNG 361

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDL+KN G +  R  D
Sbjct: 362 TSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLKKNHGKEEMRARD 421

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A W+ DLFM+RV QNA W+LF P+E   L D YG +F   Y +YE+          +
Sbjct: 422 LFYALWVSDLFMERVEQNAEWSLFCPNEAPGLADCYGDKFRDLYLSYEQTPG----LARK 477

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW  ++    ETG P+I +KD CN +S Q+++G +  SNLCTEI   +S++E A
Sbjct: 478 VVKAQDLWFAIIDSQIETGTPYILYKDACNEKSNQKNLGTIQCSNLCTEIIQYTSADEVA 537

Query: 599 VCNLGSINLLAHFAN------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           VCNL SI L              FD++ LA   R   R L+ +ID N + +E+A++SN  
Sbjct: 538 VCNLASIALPKFVKRSSPSAVASFDHNHLAEITRIITRNLNKIIDRNFYPVEEARRSNMR 597

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR  G+G+ G       L +P+ SP A  +  E  E I + ++ AS +LA+  G Y +F 
Sbjct: 598 HRPTGIGIQGLADVFIALRMPFDSPAAAVLNKEIAETIYYASLDASCQLAERDGPYETFA 657

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS   QG+   D             +  ++R  W  LK+R+   G+RNS  +A  PTA+ 
Sbjct: 658 GSPASQGILQFDMW----------DVQPSARWDWAALKQRIVKHGLRNSLLVAPMPTAST 707

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G ++  +P   N+Y +  ++G+FTVVN  L+ +L    LW   M + +  + GS+ 
Sbjct: 708 SQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQLLQDLMALGLWTPEMKNQIIANRGSVQ 767

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           N++ IPDDLK+++ +A+EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  A
Sbjct: 768 NVQGIPDDLKELYKSAWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPNFAKLTSMHFYA 827

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTLK 917
           W  GLKT  YYLR+R+A    + T+ 
Sbjct: 828 WKKGLKTGMYYLRTRAAADAIQFTVD 853


>gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera]
          Length = 791

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/837 (34%), Positives = 438/837 (52%), Gaps = 76/837 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+   + +    +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ 
Sbjct: 110 GLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKDDID---SAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P E   L D +G+EF   Y  YER+         + + A  LW ++L    ETG
Sbjct: 347 HWSLFCPXEAPGLADCWGQEFVDLYTQYEREGK-----AKKVVQAQNLWFEVLKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S++ETAVCNL SI L  +       
Sbjct: 402 TPYMLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +ID+N +                
Sbjct: 462 MESNPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPF-------------- 507

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
               G      LL + + SPEA ++  +  E I +HA+ AS ELA   G Y ++ G    
Sbjct: 508 ---QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVS 564

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            +SR  WD L+K +   G+RNS  +A  PTA+ + I G
Sbjct: 565 KGILQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILG 614

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y +GS+  +  I
Sbjct: 615 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEI 674

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+DLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GL
Sbjct: 675 PEDLKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGL 734

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+      L     T  +  T    +  S T+  EC  C
Sbjct: 735 KTGMYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 789


>gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
 gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
          Length = 850

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 411/755 (54%), Gaps = 33/755 (4%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +    +Y+G++  +L+     ++       P+YA + AR  +  L +E 
Sbjct: 1   MNFVDPIEITRKVIDGIYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARIAISNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
               + +  +  H  +            EE     + H  ++D       + + YERDF 
Sbjct: 61  -KKSFSQVIQDLHDYVNPKTGRPSSMISEETFNTVMKHRELLD-------SAIIYERDFH 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + + G + L   Y L ING   E PQ   MRVA+G+  ++ E    A+E YN +S   F 
Sbjct: 113 YNFFGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHGEDIE---SAIETYNYMSEKAFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT +PQ+SSCFL ++  D + GI+  L+  AM++K +GG+G +   +RG G
Sbjct: 170 HASPTLFNAGTPNPQMSSCFLVSMKEDSIEGIYDTLKTCAMISKTAGGIGLNIHNIRGTG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV EF+DLRKN G
Sbjct: 230 SYIAGTNGVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHPDVFEFVDLRKNHG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  R  D+  A W+PDLFMKRV +N  W+L  P E   L D YG+EFE        +  
Sbjct: 290 KDEVRARDLFLAMWVPDLFMKRVEKNEDWSLMCPAEAPGLADCYGEEFEEL-----YERY 344

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             E +  R + A  LW  +L    ETG+P++ +KD  N +S Q+++G + SSNLCTEI  
Sbjct: 345 EREGRAKRSVKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIKSSNLCTEIME 404

Query: 591 NSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            SS EETAVCNL SI L         +  +++ +L    +   + L+ +IDIN + +  A
Sbjct: 405 YSSPEETAVCNLASIALPTFIEGTGASKIYNFQRLHDVAKVVCKNLNRIIDINYYPVPSA 464

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++SN  HR IG+G+ G   A  ++  P+ S EA  +  +  E I   A+  S ELA++ G
Sbjct: 465 RRSNMRHRPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQYG 524

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            Y +++GS   QG+   D                T    W  LK ++   G+RNS  +A 
Sbjct: 525 TYETYQGSPASQGILQYDMWNRTP----------TDLWDWASLKAKIAQHGLRNSLLLAP 574

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ + I G ++  +P   N+Y++  ++G+F VVN +L+ EL +  LW+++M   +  
Sbjct: 575 MPTASTSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIA 634

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           H GSI NI  IPD +K ++ T +EI    +I+ A+ R  ++ Q+QSLN++L  PS  +L 
Sbjct: 635 HGGSIQNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLT 694

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            ++   W  GLKT +YYLR+R A S  + T+   +
Sbjct: 695 SMHFYGWKKGLKTGSYYLRTRPAASAIQFTVSNEE 729


>gi|156541405|ref|XP_001600772.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 797

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/827 (32%), Positives = 430/827 (51%), Gaps = 45/827 (5%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESD 197
               K+ ++  +G     N  ++   + + C GL    +    +       +Y G+   +
Sbjct: 2   ATRAKMHVLKRNGFKQEVNFDKITQRIRKLCHGLNMDYIDPLAITQCVINGLYPGVKTVE 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+      + T+  K P+YA + AR ++  L +E         +K     M  LY     
Sbjct: 62  LDNLAAEIAATMTTKHPDYAILAARIVISSLHKE--------NRKTFSEVMDDLYKVIDP 113

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
              E        + +++      L + + Y+RDF F Y G + L   Y   ING  +E P
Sbjct: 114 ITKEHKPMISEEYNNIIQKHKDRLNSAIDYDRDFVFNYFGFKTLEKSYLFRINGQVVERP 173

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ------LSSC 371
           Q   MRVA+ L  ++ EK    +E YN  S  +F  ++PTLF      P        S C
Sbjct: 174 QDMLMRVAVALHKEDLEK---VIETYNYTSERYFTHASPTLFFCMYYTPTNVQVKNTSDC 230

Query: 372 FLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           F+ T+  D + GIF  L+  A+++K +GG+G     +R  G  I   NG + G++P ++V
Sbjct: 231 FILTMIEDSIEGIFETLKRCAIISKSAGGIGISVHNIRAKGTAIASNNGFANGLVPMIRV 290

Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            N+T   ++QG  KR GA   YLE WH D+ EFLDL+KN G +  R  ++  A WIPDLF
Sbjct: 291 FNNTVRFIDQGGNKRPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIPDLF 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV  N  W+L  P E   L D++G EF   Y  YE      E +  R+I A  LW  +
Sbjct: 351 MQRVLDNEKWSLMCPHECPGLPDVWGDEFNKLYIKYEE-----EKRYKRQIVARDLWTAI 405

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607
           L    ETG P++ +KD CN +S QQ++G + SSNLCTEI   SS  E AVCNL SI  N+
Sbjct: 406 LKAQVETGTPYMLYKDHCNRKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIAVNM 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   +++ KL   ++T  + LD +ID+N + + +A+KSN  HR +G+G+ G   A 
Sbjct: 466 FVDVETQYYNFLKLKEVVKTVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLADAF 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L+  P+ S EA ++  +  E + F A+ AS ELA+E G YSS+ GS   +G+   D   
Sbjct: 526 LLMRYPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYDMWN 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           +            T+   W  LK ++   G+RNS  +A  PTA+ A I G ++S++P   
Sbjct: 586 VTP----------TNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEPYTS 635

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N+Y +  +SG+F +VN  L+N+L +R+LWD+ M +++  ++GSI N+  I  DLK+++ T
Sbjct: 636 NIYTRRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKELYKT 695

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +EI    +++ A+ R  +IDQ+QS+N+++ +P+ +KL  ++   W  GLKT  YYLR++
Sbjct: 696 VWEIPQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYLRTK 755

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            A +  + T+     + +A       S+T           +  C +C
Sbjct: 756 PAANALQFTVNKSLLRPHATEEVKEKSNTIME------NKEDACMMC 796


>gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 732

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/762 (34%), Positives = 402/762 (52%), Gaps = 43/762 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +    +                
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAA-----------T 109

Query: 263 GVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  A ++ + + +    +   L + + Y+RDF + Y G + L   Y L ING   E PQ 
Sbjct: 110 GKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D
Sbjct: 170 LIMRVALGIHGRDIEA---ALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V
Sbjct: 227 SIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N 
Sbjct: 287 DQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG
Sbjct: 347 TWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-- 615
            P++ +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A    ++  
Sbjct: 401 TPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDG 460

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL 
Sbjct: 461 KTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLR 520

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D       
Sbjct: 521 LPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP- 579

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 580 ---------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 630

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI
Sbjct: 631 RRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEI 690

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
               +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W
Sbjct: 691 SQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGW 732


>gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 776

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/778 (35%), Positives = 426/778 (54%), Gaps = 56/778 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSMDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKVMYNHFNER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLKAPLIADDVYNIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVAVGIHKDDID---SVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W++F P+E   L D +G+EFE  Y  YER+         + + A  LW ++L    ETG
Sbjct: 347 QWSVFCPNEAPGLADCWGEEFERLYTQYEREGK-----AKKVVQAQNLWFEILKSQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD  N +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMVFKDTSNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IG
Sbjct: 462 MESHPSKVVGSRGSKNRYFDFDKLAEVTEVVTCNLNKIIDVNYYPVENAKRSNFRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL + + SPEA ++  E  E I +HA+ AS E+A   G Y ++ GS   
Sbjct: 522 IGVQGLADAFILLGMAFDSPEAQQLNKEIFETIYYHALKASSEIAGRDGPYETYDGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+            +SR  W+ L++ +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWGVTP----------SSRWSWNALREMIFKNGVRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           PDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  
Sbjct: 692 PDDLKLIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSK 749


>gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 889

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/812 (34%), Positives = 438/812 (53%), Gaps = 45/812 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
             K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y G++   L+
Sbjct: 29  RGKMHVIKRNGRKEDVHFDKITSRIAKQCYNLDMNYVDPSAVAIQVIRGLYSGVTTVILD 88

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ T+    P+YA + AR  +  L +E         +K     M  LY       
Sbjct: 89  NLAAETAATMATNHPDYAILAARIDVSNLHKET--------KKNFSKVMHDLYHARDSVT 140

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +        + +++  +   L + + Y+RDF++ Y+G + L   Y L ING  +E PQ 
Sbjct: 141 NQHTPIINERYYNIIKNNAEKLDSAIIYDRDFSYNYIGFKTLERSYLLKINGKIVERPQH 200

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRVA+G+   + +K   A+E YN LS  +F  ++PTLFN+ T + Q+SSCFL T+  D
Sbjct: 201 MLMRVAVGIHETDIDK---AIETYNYLSERYFTHASPTLFNACTNNQQMSSCFLLTLDND 257

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIFG L++ A+++KY+GG+G +   +R            + G++  LK+ ND A+ V
Sbjct: 258 SIKGIFGTLKKCALISKYAGGIGLNVHCIRAKSTE--DNTDTTNGLVSVLKLYNDMAIYV 315

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FL+LR+N GD   R  D+    WIPDLFM+RV  N 
Sbjct: 316 DQGGNKRPGAFAIYLEPWHADIFDFLELRRNIGDGNMRARDLFYGLWIPDLFMERVYNNE 375

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L D++G EF+  Y  YE++         +++ A A+W  +L    ETG
Sbjct: 376 NWSLMCPHESPGLADVWGDEFKELYIRYEKEGR-----YKKQVEARAVWVAILRSQVETG 430

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD CN +S  QH+G +  SNLCTE+   S   E AVCNL SI  N+  +  N  
Sbjct: 431 TPYMLYKDHCNRKSNHQHIGTIKCSNLCTEVIQYSGPGEVAVCNLASIAVNMFVNTNNKT 490

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+DKL +  +   R LD VID+N + I + K SN  HR IG+G+ G   A  L+  P+ 
Sbjct: 491 FDFDKLKTIAKVVTRNLDKVIDVNFYPIVETKTSNQKHRPIGIGIQGLADAFLLMRYPFE 550

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA E+  +  E + + A+ AS +LA E+G Y +++GS   +G+   D   +       
Sbjct: 551 SKEAKELNIKIFETLYYGALEASCKLAAEKGTYETYEGSPVSKGILQYDMWNVKP----- 605

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   WD+LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+YV+  +
Sbjct: 606 -----TNLWDWDKLKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYVRRVL 660

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F +VN  L+ +L  R LWDE M +++    GS+ NI+RIPDDLK ++ T +EI    
Sbjct: 661 SGEFVIVNPHLLRDLTARGLWDEDMQNEILASFGSVQNIDRIPDDLKVLYKTVWEIPQKV 720

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           ++E A+ R  +IDQ+QSLN+++ +P+ +KL  ++   W  GLKT  YYLR++ A +  + 
Sbjct: 721 ILEMAADRGAFIDQSQSLNVHIGDPTTEKLTSMHFFGWRSGLKTGMYYLRTKPAANPIQF 780

Query: 915 TLKGVD----------GKLNAVPVTDPNSSTH 936
           T+                +N  P+  PN    
Sbjct: 781 TVDKSKLRNNDSISSASTVNNTPIQSPNKDDD 812



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGV--TSFDPSKISRAIMKAFMAVEGKG 61
            K ++ G+ +  PS           + VIKRNG      FD  KI+  I K    ++   
Sbjct: 7   VKMLSLGNNNPSPSKMPVKEIGRGKMHVIKRNGRKEDVHFD--KITSRIAKQCYNLDMNY 64

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
              S     +I+ L     T +L +  +                 M + H         Y
Sbjct: 65  VDPSAVAIQVIRGLYSGVTTVILDNLAAETAAT------------MATNHPD-------Y 105

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMD-----DGTLISFNSKRLEMIVEEACSGLQDV 176
               + +  +  H ++    +  +  +               ++R   I++     L   
Sbjct: 106 AILAARIDVSNLHKETKKNFSKVMHDLYHARDSVTNQHTPIINERYYNIIKNNAEKL--- 162

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY--AKVTARFLLEKLRREVLT 234
            S I+    +   Y G    +    L       I + P +   +V        + + + T
Sbjct: 163 DSAIIYDRDFSYNYIGFKTLERSYLLKI--NGKIVERPQHMLMRVAVGIHETDIDKAIET 220

Query: 235 TVYKKPQKATH 245
             Y   +  TH
Sbjct: 221 YNYLSERYFTH 231


>gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 796

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/825 (35%), Positives = 444/825 (53%), Gaps = 50/825 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L+  
Sbjct: 5   DLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVELDKL 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +  ++   + K P+Y  +  R  +  L +    +V +       H++            +
Sbjct: 65  IAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH-----------D 113

Query: 262 EGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR----- 313
            G  A LL + + +        L   + Y+RD  FE+ G + L   Y L ++  R     
Sbjct: 114 TGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ  F+RVA+G+     E  +R  E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL
Sbjct: 174 AERPQQMFLRVALGIHG---EDMERVKETYDHMSLGDFTHATPTLFNAGTPFPQMSSCFL 230

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+V N
Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDLFM+
Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV     WTL  P     L D YG +F+  YE YER     E +  + + A +LW  +L 
Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI L    
Sbjct: 406 SQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465

Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G      L
Sbjct: 466 DKERRIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D     
Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                     R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P   N+
Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++   +
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L  ++  AW  GLKT  YYLRS+ A
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K T+     K     V + +    S   PS+     +C  C
Sbjct: 757 ADAIKFTVDPNTLKG---LVKEDDRKQVSSATPSN----EDCLNC 794


>gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
 gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
          Length = 786

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/790 (34%), Positives = 431/790 (54%), Gaps = 51/790 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++    L        IV  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR ++  L ++         +K+    ++ +Y     R    
Sbjct: 61  AETAASMTTSHPDYAILAARIVVSNLHKKT--------KKSFSETVKEMYSHVDER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+KA L+   + D    +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ 
Sbjct: 110 GLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ E    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKEDIEA---AIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKED 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG ++            DV ++LDL+KN G +  R  D+    WIPDLFM+RV  N+ 
Sbjct: 287 DQGGGKR-----------KDVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSD 335

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P+E   L D +G+EFE  Y  YER+         R +SA  LW  +L    ETG+
Sbjct: 336 WSLFCPNEAPGLADCWGEEFESLYTRYEREGR-----AKRSLSAQKLWFAILESQMETGN 390

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P++ FKD CN +S QQ++G +  SNLCTEI   +S  ETAVCNL SI L         + 
Sbjct: 391 PYMVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINS 450

Query: 619 D----KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           +                L+ +IDIN + ++ AK+SN  HR IG+G+ G   A  LL +P+
Sbjct: 451 ETKLVDCFQVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPF 510

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA ++  +  E I +HA+  S  LA+  G Y ++ GS   +GVF  D   ++     
Sbjct: 511 DSEEARDLNKDIFETIYYHAMKTSSVLAELYGVYETYPGSPVSKGVFQPDMWNVIP---- 566

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 + R  W  LK+ V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 567 ------SGRWDWPALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRV 620

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+N+L    +W   + + +  ++GSI +IE IPDDLK+I+ T +EI   
Sbjct: 621 LSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQR 680

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YYLRS++A    K
Sbjct: 681 TIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIK 740

Query: 914 STLKGVDGKL 923
            T+     K+
Sbjct: 741 FTVDTASLKV 750


>gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1504

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/794 (34%), Positives = 438/794 (55%), Gaps = 41/794 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   + +  P+++ + AR  +  L +           ++    +  LY     R   
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHKNT--------HESFSETITELYNITDSR--- 110

Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            G  + L+ E + +    +   L   + Y+RDF ++Y G + L   Y L    + + IE 
Sbjct: 111 -GRSSPLVSEEVYNIVKMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+   + +    A+E Y L+S+  F  +TPTLFNSGT HPQ+SSCFL ++
Sbjct: 170 PQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSI 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA
Sbjct: 227 KEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKG+   YLE WH DV EFLDL+KN G +  R  D+  A WIPDLFMKRV 
Sbjct: 287 RYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVM 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTLF P+E   L D YG+EFE  YE YE+          + + A +LW K+L    
Sbjct: 347 ANGDWTLFCPNEAPGLQDTYGEEFEALYEKYEKDGIGR-----KTVKAQSLWFKILESQQ 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG P++ +KD  N +S Q+++G +  SNLC EI   +SS+E AVCNL SI L       
Sbjct: 402 ETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSSDEVAVCNLASIALNMFVDKK 461

Query: 615 Q--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              +D+D+L    +   + L+ VID N + + +A+KSN  HR IG+G+ G   A  L+  
Sbjct: 462 TRTYDFDRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRY 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY SPEA+++ ++  E I   A  AS+ELA+  G Y +F+GS   +G+   D   ++ + 
Sbjct: 522 PYESPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVIPD- 580

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W  LK+ +K  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+
Sbjct: 581 --------SGRWDWASLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F  VN  LV++L +  LW++ +   +    GS+  +E IP +++ ++ T +EI 
Sbjct: 633 RVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPSEIQDLYKTVWEIK 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A   
Sbjct: 693 QKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADA 752

Query: 912 EKSTLKGVDGKLNA 925
            + TL      + +
Sbjct: 753 IQFTLDAKKVTVES 766


>gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 785

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/828 (33%), Positives = 438/828 (52%), Gaps = 61/828 (7%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESD 197
           P   KL +    G +      ++   +E  C  L    V    ++ +    +Y G++ ++
Sbjct: 3   PNNTKLFVTKRGGFVQDIVFDKIRKRIESLCYNLNADYVHPSTIVVKVVAGLYPGVTTAE 62

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+T    ++ +++   P+Y  + AR  +  + ++                      + F 
Sbjct: 63  LDTLAAETAASMMTLHPDYGVLAARIAISNMHKQT--------------------DDSFA 102

Query: 258 RYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           R ++E   A L+     D    +   L   + +  DF + Y G++ L   Y +HI    +
Sbjct: 103 RTMKELYAAGLISMFHYDVVCRHGRTLDEAIVHANDFNYSYFGIKTLERSYLMHIKDRLV 162

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MR A+G+  +  +     +E YN +S  +F  +TPTLF++ T  PQLSSC+L 
Sbjct: 163 ERPQYLLMRCALGIHGENIDA---VIETYNYMSRHYFTHATPTLFSAATPKPQLSSCYLL 219

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF  + + A ++K +GG+G +   +R  G+ I GTNGKS G++P L+V N+
Sbjct: 220 TIKGDSIDGIFRTVADCAAISKTAGGIGLNVHDIRARGSPIDGTNGKSNGLVPMLRVFNN 279

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            A  V+QGG KR G+   YLE WH D+ EFLDLRKN G + +R  D+  A WIPDLFM+R
Sbjct: 280 VARYVDQGGGKRMGSFAIYLEPWHADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRR 339

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V Q+  W+L  P +   L +++G+ FE  YE+YER+         R + A ALW  ++  
Sbjct: 340 VEQDGDWSLMCPHKCPCLSEVWGESFEHLYEHYERKGR-----AVRTVKARALWHAIIES 394

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL S+ L     
Sbjct: 395 QVETGTPYMMYKDACNRKSNQQNLGTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVV 454

Query: 613 NNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +        FD+++L   +    R L+ +IDIN + + +A++SN  HR IG+G+ G    
Sbjct: 455 SGTPDRPKHFDFEQLRRIVHVVTRNLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADT 514

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             L+ +PY S EA E+     E I F A+  S +LA+E G Y SF GS    G    D  
Sbjct: 515 FVLMGMPYESDEARELNRRIFETIYFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMW 574

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            +  + +            WDEL+  ++  G+RNS  +A  PTA+ A I G ++S +P  
Sbjct: 575 PVDVDDKP--------MWNWDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPIT 626

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+YV+  +SG+F V+N  LV  L    LW E+M + +    GS+ +IE IP ++++++ 
Sbjct: 627 SNIYVRRVLSGEFQVINRHLVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYK 686

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI    +I+ A+ R ++IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+
Sbjct: 687 TVWEISGRRIIDMAADRGRYIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRT 746

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++A +  + T+    G  ++   T             +CT   EC  C
Sbjct: 747 KAAANAIQFTVDSSSGVSSSASSTQDGP---------ACTR--ECLSC 783


>gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 803

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/827 (40%), Positives = 468/827 (56%), Gaps = 50/827 (6%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +  P A  + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  
Sbjct: 18  TSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTR 77

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   I ++  LI +EP Y ++ AR L   + +EV                  +Y   F
Sbjct: 78  ELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQ--------------EIYA--F 121

Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NG 311
            + +  G +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L      
Sbjct: 122 SQSVGRGHEVGLINDRLLNFVQTNARKLNDAIDMSLDLNFDYFGLRTLYDRYLLRHPHTR 181

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             IE PQ FF+R+A  L    +E    A+  Y  + +  ++ S+PTLFNSGT H QLSSC
Sbjct: 182 KVIETPQQFFLRIASAL----SEDVPEALALYKRMGNLDYLPSSPTLFNSGTTHEQLSSC 237

Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           FL   P D L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK 
Sbjct: 238 FLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKT 297

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANWIPDLFM
Sbjct: 298 MDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFM 357

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  +  W+LF P  V +  DL+G+ FE AY   E Q         R ISA  L+ +M+
Sbjct: 358 KRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQGKAN-----RTISARKLYSRMM 412

Query: 551 TMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S+EETAVCNLGSINL 
Sbjct: 413 RTLAETGNGWMTFKDKCNRASNQTLRAGNVIHLSNLCTEILEVTSAEETAVCNLGSINLG 472

Query: 609 AHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            HF  N +FD+DKLA T+R AVR LD VID+N + IE A++ N   R +GLG MG Q   
Sbjct: 473 NHFDGNGEFDFDKLADTVRLAVRQLDRVIDLNFYPIESARRGNLRWRPVGLGCMGLQDVF 532

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               +P+   EA  ++ +  E I FHA+  SVELAQERG + SF  +    G    D+  
Sbjct: 533 FRKRLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFADTRAASGELQFDAWN 592

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           ++ E  +           WD L++R+K  G+RNS  +AIAPTATIA+I G  + ++P   
Sbjct: 593 VVPEDAER----------WDSLRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVS 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NL+ +  +SGDF  VN +LVNELK+   W   M   +K  +GSI  I +IP+ L+ ++ T
Sbjct: 643 NLFKRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQGITQIPETLRHVYRT 702

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+E+    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR 
Sbjct: 703 AWELPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRP 762

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           AT + K+T+    G             +    I  S  +   CE CQ
Sbjct: 763 ATKIAKTTVSHAAG------AAPEKVFSPEEAIACSLENPEACEACQ 803



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
            P     + V KRNG     D +KI RA+ +   + EG  A   +RV 
Sbjct: 18 TSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGLHAVDPMRVA 63


>gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/823 (34%), Positives = 441/823 (53%), Gaps = 47/823 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   + +  P+++ + AR  +  L +           ++    +  LY     R   
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHKNT--------HESFSETVTELYNITDSR--- 110

Query: 262 EGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
            G  + L+ E + +  L     L   + Y+RDF ++Y G + L   Y L    + + IE 
Sbjct: 111 -GRSSPLVSEEVYNLVLMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIER 169

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRVA+G+   + +    A+E Y L+S+  F  +TPTLFNSGT HPQ+SSCFL ++
Sbjct: 170 PQHMIMRVAVGIHGDDVDA---AIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSI 226

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA
Sbjct: 227 KEDSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTA 286

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKG+   YLE WH DV EFLDL+KN G +  R  D+  A WIPDLFMKRV 
Sbjct: 287 RYVDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVM 346

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  WTLF P+E   L D YG EFE  YE YE+          + + A +LW K+L    
Sbjct: 347 ANGDWTLFCPNEAPGLQDTYGDEFEALYEKYEKDGIGR-----KTVKAQSLWFKILESQQ 401

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG P++ +KD  N +S Q+++G +  SNLC EI   +S +E AVCNL SI L       
Sbjct: 402 ETGIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKK 461

Query: 615 Q--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              +D+ +L    +   + L+ VID N + + +A+KSN  HR IG+G+ G   A  L+  
Sbjct: 462 TRTYDFGRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRF 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY SPEA+++ ++  E I   A  AS+ELA+  G Y +F+GS   +G+   D   +  + 
Sbjct: 522 PYESPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVTPD- 580

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   + R  W  LK+ VK  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+
Sbjct: 581 --------SGRWDWASLKEEVKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F  VN  LV++L +  LW++ +   +    GS+  +E IP +++ ++ T +EI 
Sbjct: 633 RVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPMEIQALYRTVWEIK 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A   
Sbjct: 693 QKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADA 752

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE-CEVC 953
            + TL         V V  P     S   P     D E C  C
Sbjct: 753 IQFTLDA-----KKVTVESPLKPRSSPLKPQYVQEDEETCIAC 790


>gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
           xanthus DK 1622]
 gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
           xanthus DK 1622]
          Length = 785

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/819 (38%), Positives = 471/819 (57%), Gaps = 43/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G   + +  ++   V  +C GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 1   MRVRKRNGGTETVDLNKIVRAVGRSCVGLPRVDAMRVATKTISGLYDGATTRELDSLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y +++AR L   +++EV                       F + +  G 
Sbjct: 61  TAAALIVEEPEYGRLSARLLATFIQKEVSNQDIHS----------------FSQSVAAGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L    +R  +E PQ 
Sbjct: 105 KHGLIADRLLQFVQANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQE 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L+    +    A+E Y L SS  ++ S+PTLFNSGTRH QLSSCFL   P D
Sbjct: 165 FFLRVASALSG---DNVNEAIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPAD 221

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 222 ELDAIYKKYSDIAMLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAV 281

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR+NTGDD RRTH++N ANW+PDLFMKRV  +  
Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGD 341

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V    DLYG  FE AY   E           RK+ A  L+ +M+  L +TG+
Sbjct: 342 WSLFDPKSVPHFTDLYGDAFEQAYAKAEADGL-----AMRKVKARDLYARMMKSLAQTGN 396

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +S  ETAVCNLGS+NL     + +F
Sbjct: 397 GWMTFKDISNRKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKF 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +  + A+R LD VID+N + I  A  SN   R +GLGLMG Q     L + + S
Sbjct: 457 DFERLRANAQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDS 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  ++ +  E I F A++ S ELA++ GA+ SF  +   +G    D  G++ E     
Sbjct: 517 AEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPE----- 571

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD L++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 572 -----DTARWDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLS 626

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV +L+   LW+E + + +K  +GS+ +I  +P++L+ ++ TA+E+    L
Sbjct: 627 GDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSL 686

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++  + R  +IDQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + K+T+
Sbjct: 687 LDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATV 746

Query: 917 -KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G    +          +T +  +  S  +   CE CQ
Sbjct: 747 GAGGGASVAQAAPAPVAKATEAEAVACSLENPEACEACQ 785


>gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 815

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/816 (49%), Positives = 522/816 (63%), Gaps = 23/816 (2%)

Query: 156 SFNSKRLEMIVEEACSGLQDV--SSKIVLSETY-KNMYDGLSESDLETALIFSSRTLIEK 212
              + R+  I++ A  G   V  S +  L     +N Y G   +++  A++ +    IE 
Sbjct: 6   PTQTDRIASILDRATDGEPTVTESDRTALRRAIDENCYAGADRAEVYEAILGTLSARIEA 65

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +P Y +V AR   ++   EV+       +  T  E+   Y   F   IE GV   LL   
Sbjct: 66  KPAYKRVAARVFRQRYYHEVIG------EDLTGTELDRAYRTIFRENIERGVATDLLDTR 119

Query: 273 MMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL 330
           ++D FDL  LA  L  ERD  FEYL ++ LY RYFL  N G  +E+PQAF+MRVAMGLA+
Sbjct: 120 LVDRFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAV 179

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +E +   RA EFY++LS   F  STPTLF+SGT HPQLSSC+LTTVPDDL GIF A + +
Sbjct: 180 EEDDPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHH 239

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K+SGGLGNDWTP+R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CA
Sbjct: 240 AQLSKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACA 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  WH+D   F+DL++ TGD+RRRT DMNTA WIPDLFM+RV     WTLFSPDEV DL
Sbjct: 300 YLAIWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           H+  G+ F   Y  YE+ A+ G+I+ F  + A  LWR +LT LFETGHPW+TFKDPCNI 
Sbjct: 360 HEATGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIG 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ H G + SSNLCTEITLN+S++E AVCNLGS+N   H  + + D D L  T+ TA+R
Sbjct: 420 SPQDHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMR 479

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV+D+  +  E+A+ SN  HR +GLG MGF  AL  + +P  S EAVE A+   EF+
Sbjct: 480 MLDNVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFV 539

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           ++HAI  S ELA ERGAY SF+GS WD+ + P D++ LL E R  E+   RT  L WD +
Sbjct: 540 AYHAIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERGREIPTERTETLEWDAV 599

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +K +   GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFT+VN  LV +
Sbjct: 600 RKSIAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVAD 659

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L++RDLWD+ M   +KYHDGSI  IE IP+DL++++  AFEIDP   +   + RQ WIDQ
Sbjct: 660 LRERDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQ 719

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--GKLNAVP 927
           + S N++     G  LD IY  AW +GLKTTYYLR+  A+ VEKSTL   +     +   
Sbjct: 720 SVSHNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTLDLSEYGKTQHRDA 779

Query: 928 VTDPNSSTHSLGIPS---------SCTSDTECEVCQ 954
             DP   T                +   D  C+ CQ
Sbjct: 780 SGDPEDGTTRSNETDRDQGGHSDLASVEDPTCDACQ 815


>gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein
          Length = 771

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/817 (34%), Positives = 441/817 (53%), Gaps = 56/817 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +    
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKN--- 109

Query: 263 GVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++    MD        L + + YERDF++ Y G + L   Y L IN   +E PQ 
Sbjct: 110 GKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + +    A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D
Sbjct: 170 MLMRVAVGIHQWDID---SAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  +
Sbjct: 227 SIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYI 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  + 
Sbjct: 287 DQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  PDE   L +++G EFE  Y  YER+     I     I A  +W+ ++    ETG
Sbjct: 347 EWSLMCPDECPGLDNVWGDEFERLYTLYERERRYKSI-----IKARVVWKAIIESQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNLGS+ L     + +FD
Sbjct: 402 TPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFVIDGRFD 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S 
Sbjct: 462 FLKLKVVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSL 521

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA +I  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++        
Sbjct: 522 EAQDINKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP------- 574

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+ LK +++T G+RNS  +A  P    A I G ++S++P   N+Y +  +SG
Sbjct: 575 ---SDLWNWEPLKDKIRTYGLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSG 631

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I
Sbjct: 632 EFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTII 690

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL
Sbjct: 691 KMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTL 750

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                K                  P        C  C
Sbjct: 751 DKDKIK------------------PPVVCDSEICTSC 769


>gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV]
          Length = 772

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/782 (33%), Positives = 427/782 (54%), Gaps = 32/782 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  
Sbjct: 7   VTKRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAE 66

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ ++     +Y+ + AR  +  L +E         +    + +  +Y     +      
Sbjct: 67  TAASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATP 118

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRV
Sbjct: 119 MISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRV 178

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI
Sbjct: 179 AIGIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGI 235

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  
Sbjct: 236 YDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGN 295

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L 
Sbjct: 296 KRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLM 355

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +   L D +G EFE  YE YE+Q         +++SA  LWR ++    ETG P++ 
Sbjct: 356 CPMQSPGLADCHGVEFEALYEKYEKQGR-----YVKRVSAQTLWRAIIEAQVETGTPYML 410

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDK 620
           +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++
Sbjct: 411 YKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFER 470

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A 
Sbjct: 471 LKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAA 530

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+  +  E I + A+ AS ELA + G Y ++KGS   +G    D                
Sbjct: 531 ELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GATP 581

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F 
Sbjct: 582 SNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQ 641

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A
Sbjct: 642 VVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMA 701

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 702 ADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 761

Query: 920 DG 921
             
Sbjct: 762 AA 763


>gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/815 (31%), Positives = 436/815 (53%), Gaps = 32/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           L +   DG L      ++ + +E+ C GL    +    +      ++  G++   ++   
Sbjct: 12  LFVKKRDGRLEEVLMDKITLRIEQLCDGLNMDFIDPPEITLYVIGDLCPGITTVQIDNLA 71

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P++A + AR  +  L +E         ++     +  LY     R    
Sbjct: 72  AETAAYLTTKHPDFAVLAARIAISNLYKET--------KENFSDVIYDLYNMSNERNQSR 123

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++      L N +K++RD+ + Y G + L   Y L I+G  +E PQ   M
Sbjct: 124 MPIISDFHYGIVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKIDGKVVERPQHLLM 183

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+  ++ +    A+E Y+L+S  +F  ++PT+FN+ T  PQLSSCFL     D+L 
Sbjct: 184 RVSIGIHGEDIDA---AIETYDLMSLKYFTHASPTMFNASTPRPQLSSCFLVANKSDELE 240

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLG-AHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
                ++  A +++ +GG+G     V   G         +S G++  LKV ND A  ++Q
Sbjct: 241 DFGKTVKTCAKISQSAGGIGVHLHNVGAAGTKWTKYPKCESHGLVEPLKVLNDLAQYIDQ 300

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R GAV  Y+E WH D+  + +LRKNTG+   +T D+  A WIPD FM+RV  N  W+
Sbjct: 301 GGRRPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWS 360

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L D++G +F   Y+ YE      E    +++ A  LW +++T   ETG P+
Sbjct: 361 LMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKLYNKQVPARELWFRIITSQIETGMPY 415

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CN +S Q+++G +  SNLCTE+   +S EE AVCNL SI +      N ++D++
Sbjct: 416 MLYKDACNAKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNMFVKPNGEYDFE 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ VID+N + + +A+ SN  HR IG+G+ G      L+  P+ SPE+
Sbjct: 476 KLLKITKIVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLFSLMRFPFGSPES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   +   +           
Sbjct: 536 RKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYEMWNVKP--------- 586

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S   W+ LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  +SG+F
Sbjct: 587 -SSLWNWEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEF 645

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           +V+N  L+N+L + +LW+E M + L +  GS+  I+ IPD++K+++ T +E+    +++ 
Sbjct: 646 SVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKTNWELSQKIILDM 705

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    + T+  
Sbjct: 706 AADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVDK 765

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                N    T+ N + +   +  S  +   C +C
Sbjct: 766 STVSNNVAIQTEKNDALNMEQLVCSLENKDACTMC 800


>gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
 gi|74854399|sp|Q54Q71|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
          Length = 870

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/796 (33%), Positives = 415/796 (52%), Gaps = 43/796 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSES 196
             K+ ++  DGT  + +  ++   +   C          V    V  +    ++ G+  +
Sbjct: 13  ESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTT 72

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+     ++  +  + P+Y  + AR  +  L ++   +  +  +K   +E         
Sbjct: 73  ELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKK--QYEFINPKSNLL 130

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              + + +   ++           L + + Y RDF +++ G + L   Y   ING  +E 
Sbjct: 131 APLVSKELYEIVMKHG------ERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVER 184

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+  ++ E    A+  Y  LS   F  +TPTLFN+GT  PQ+SSCFL  +
Sbjct: 185 PQHMLMRVSIGIHGEDLE---SAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQM 241

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA
Sbjct: 242 KEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTA 301

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   YLE WH DV EF+DL+KNTG +  R  D+  A W+ D+FM+RV 
Sbjct: 302 RYVDQGGGKRKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVE 361

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           QN  W LF P+E   L + + +E    Y  YE   D       R I A  LW  ++    
Sbjct: 362 QNGDWALFCPNEAPGLAETHSEEHRALYLKYEATPDLPR----RVIKAQELWFAIMESQV 417

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--- 611
           ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       
Sbjct: 418 ETGTPFILYKDACNAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK 477

Query: 612 ------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                    +FD+  L    +     L+ +ID N + + +AK SN  HR IG+G+ G   
Sbjct: 478 VGSTDPKEKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLAD 537

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               + +P+ S  A ++  E  E I F A++AS ELA   G Y SFKGS   +G+   D 
Sbjct: 538 VFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDM 597

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             +            +SR  W ELK  +    G+RNS  +A  PTA+ + I G ++  +P
Sbjct: 598 WNVTP----------SSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEP 647

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  ++G+FT+VN  L+ +L +  +W   M + +    GSI +I  IPDDLK++
Sbjct: 648 YTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKEL 707

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  +W  GLKT  YYL
Sbjct: 708 YKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYL 767

Query: 904 RSRSATSVEKSTLKGV 919
           R+R A    + T+  +
Sbjct: 768 RTRPAADAIQFTVDPI 783


>gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis]
 gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis]
          Length = 771

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/796 (36%), Positives = 420/796 (52%), Gaps = 52/796 (6%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +    +Y G+S  +L+      + +L     +YA + AR  +  L +E         
Sbjct: 3   ITLKVINGLYCGVSTQELDNLAAEIAASLTTLHADYALLAARIAVSNLHKET-------- 54

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLG 297
           +K      + L+        E  + + L+ E        +   L + + Y+RDF + Y G
Sbjct: 55  KKVFSDVFEDLFKHVNK---ETNLPSPLVSEYHYNIVKNNSDRLNSAIIYDRDFGYNYFG 111

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            + L   Y L ING   E PQ   MRVA+G+  ++ +    AVE YNLLS   F  ++PT
Sbjct: 112 FKTLERSYLLKINGKIAERPQHLLMRVAIGIHGEDID---SAVETYNLLSERFFTHASPT 168

Query: 358 LFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LF + T  PQLSSCFL T V D + GIF ++++ AM++K +GG+G +   +R  G  I G
Sbjct: 169 LFAAATNRPQLSSCFLLTIVSDSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICG 228

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R
Sbjct: 229 TNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHR 288

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P +   L D++G++FE  Y  YER+       
Sbjct: 289 ARDLFFALWIPDLFMKRVEANEDWSLMCPHKCPGLPDVWGEDFENLYIKYEREGRAN--- 345

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             R I A +LW  ++    ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +
Sbjct: 346 --RVIKAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPD 403

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL SI L         +D+ KL    +   + L+ +IDIN + + +AKKSN  HR
Sbjct: 404 EIAVCNLASIALNMFVTQEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHR 463

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ GF  AL L+   Y S EA  +  +  E I + A+ AS ELAQ  G Y ++ GS
Sbjct: 464 PIGIGVQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGS 523

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D                T    W+ LKK +   G+RNS  +A  PTA+ A 
Sbjct: 524 PVSKGILQYDMWNKSP----------TDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQ 573

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++S +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NI
Sbjct: 574 ILGNNESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNI 633

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           E IP +++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W 
Sbjct: 634 ESIPKEIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWK 693

Query: 895 MGLKT-TYYLRSRSATSVEKSTL----------------KGVDGKLNAVPVTDPNSSTHS 937
            GLKT  YYLR++ A +  + T+                K    +++    +D       
Sbjct: 694 AGLKTGMYYLRTKPAANAIQFTVNKNISVLESNGHSSFEKNTSLEVDNPSESDIERERRM 753

Query: 938 LGIPSSCTSDTECEVC 953
             +  S  +   C  C
Sbjct: 754 ADMICSLENKDACLSC 769


>gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV]
 gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV]
          Length = 770

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/785 (33%), Positives = 426/785 (54%), Gaps = 37/785 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   +    +++  +E+ C GL    V+   V     + +Y G++ ++L+  + 
Sbjct: 5   HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +     +Y+ + AR  +  L +E   + +          +  +Y     +    G
Sbjct: 65  ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFD--------VIIDMYEAIDPK---TG 113

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           VK  ++     +    +   L + + ++RDF ++Y G + +   Y   ING  +E PQ  
Sbjct: 114 VKTPMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYM 173

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDD 379
            MRVA+G+  ++ +    A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D 
Sbjct: 174 MMRVAIGIHGEDIDA---AIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDS 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ AM++K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+
Sbjct: 231 IEGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVD 290

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ 
Sbjct: 291 QGGNKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSM 350

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D YG EF+  Y+ YE +         R++ A  +WR ++    ETG 
Sbjct: 351 WSLMCPMQSPGLADCYGAEFDALYQKYEEEGR-----YVRRVHAQTMWRAIIESQVETGT 405

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D
Sbjct: 406 PYMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSGVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL    +   R L+  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S 
Sbjct: 466 FEKLKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESV 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ AS ELA   G Y +++GS   +GV   D             
Sbjct: 526 AAAELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWDN--------- 576

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  +    W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 577 VTPSDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 636

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ + + + +++GS+  IE IP ++++++ T +E+    LI
Sbjct: 637 EFQVVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLI 696

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             A+ R  +IDQ+QS N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 697 NMAADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756

Query: 917 KGVDG 921
                
Sbjct: 757 DKTAA 761


>gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV]
          Length = 770

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/785 (33%), Positives = 426/785 (54%), Gaps = 37/785 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   +    +++  +E+ C GL    V+   V     + +Y G++ ++L+  + 
Sbjct: 5   HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +     +Y+ + AR  +  L +E   + +          +  +Y     +    G
Sbjct: 65  ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFD--------VIIDMYEAIDPK---TG 113

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           VK  ++     +    +   L + + ++RDF ++Y G + +   Y   ING  +E PQ  
Sbjct: 114 VKTPMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYM 173

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDD 379
            MRVA+G+  ++ +    A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D 
Sbjct: 174 MMRVAIGIHGEDIDA---AIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDS 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ AM++K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+
Sbjct: 231 IEGIYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVD 290

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ 
Sbjct: 291 QGGNKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSM 350

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D YG EF+  Y+ YE +         R++ A  +WR ++    ETG 
Sbjct: 351 WSLMCPMQSPGLADCYGAEFDALYQKYEEEGR-----YVRRVHAQTMWRAIIESQVETGT 405

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
           P++ +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D
Sbjct: 406 PYMLYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSGVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL    +   R L+  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S 
Sbjct: 466 FEKLKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESV 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+  +  E I + A+ AS ELA   G Y +++GS   +GV   D             
Sbjct: 526 AAAELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWDN--------- 576

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  +    W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 577 VTPSDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSG 636

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  LV +L    LW++ + + + +++GS+  IE IP ++++++ T +E+    LI
Sbjct: 637 EFQVVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLI 696

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
             A+ R  +IDQ+QS N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+
Sbjct: 697 NMAADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTV 756

Query: 917 KGVDG 921
                
Sbjct: 757 DKTAA 761


>gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/777 (33%), Positives = 426/777 (54%), Gaps = 32/777 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L +E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 PDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L D +G EFE  YE YE+Q         +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQGR-----YVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A E+
Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+  
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTVDK 755


>gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 800

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/827 (40%), Positives = 472/827 (57%), Gaps = 53/827 (6%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +  P A  + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  
Sbjct: 18  TSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTR 77

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   I ++  LI +EP Y ++ AR L   + +EV                  +Y   F
Sbjct: 78  ELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQ--------------EIYA--F 121

Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NG 311
            + +  G +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L      
Sbjct: 122 SQSVSRGHEVGLINDRLLNFVQTNARKLNDAIDGALDLNFDYFGLRTLYDRYLLRHPHTR 181

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             IE PQ FF+R+A  L   E   E  A+  Y  + +  ++ S+PTLFNSGT H QLSSC
Sbjct: 182 KVIETPQQFFLRIASAL--SEDVSETLAL--YKRMGNLDYLPSSPTLFNSGTTHEQLSSC 237

Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           FL   P D L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK 
Sbjct: 238 FLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKT 297

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR H++N ANW+PDLFM
Sbjct: 298 MDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFM 357

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  +  W+LF P  V +  DL+G+ FE AY   E Q         R ISA  L+ +M+
Sbjct: 358 KRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQGKAN-----RTISARKLYARMM 412

Query: 551 TMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S++ETAVCNLGSINL 
Sbjct: 413 RTLAETGNGWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLG 472

Query: 609 AHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            HF   N+FD++KLA T+R AVR LD VID+N + IE A+++N   R +GLG MG Q   
Sbjct: 473 NHFDEHNEFDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVF 532

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               +P+ S EA  ++ +  E I FHA+  S ELAQERG + SF  +    G    D+  
Sbjct: 533 FRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWN 592

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           ++ E              WD L++R+K  G+RNS  +AIAPTATIA+I G  + ++P   
Sbjct: 593 VVPE----------DTARWDALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVS 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NL+ +  +SGDF  VN +LVNELK+  LW   M   +K  +GSI  + +IP+ L++++ T
Sbjct: 643 NLFKRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRT 702

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+E+    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR 
Sbjct: 703 AWELPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRP 762

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           AT + K+T+           V  P+ +     I  S  +   CE CQ
Sbjct: 763 ATKIAKTTV----STAAPAKVFSPDEA-----IACSLENPEACEACQ 800



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
            P     + V KRNG     D +KI RA+ +   + EG  A   +RV 
Sbjct: 18 TSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGLHAVDPMRVA 63


>gi|154340341|ref|XP_001566127.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 799

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/820 (34%), Positives = 436/820 (53%), Gaps = 43/820 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G   ++++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQTYDASKIRRRFERVMEGLDSDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +  +    H     +       + + V
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTSESLLETFRLLHDHVTVQTHRP--APLVADDV 125

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
              +            L + + Y RD  FE+ G + L   Y L I   R     +E PQ 
Sbjct: 126 WEVMQQHHK------ELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMRVA+G+  ++    +   E YNL+S   F  +TPTLFN+GT  PQ+SSCFL     D
Sbjct: 180 MFMRVALGIHGRDLNNVR---ETYNLMSMGFFTHATPTLFNAGTPKPQMSSCFLVASKDD 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFMKRV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D +G+ FE  YE YE +         + I A  +W  +L    ETG
Sbjct: 357 RWTLMDPNTCPGLSDCHGEAFERLYERYEAEGRG-----VKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P+I +KD CN +S Q+++G +  SNLCTEI   +S EETAVCNL SI L         +
Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKRE 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G      L+ +P+ 
Sbjct: 472 FNHQLLYAVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +FKGS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKN------- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A   + R  W  LK++V  +G+RNS  ++  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E M +++  ++GSI NI+ IPDDLK+++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKF 763

Query: 915 TLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+      ++     +    S+H +  P       EC  C
Sbjct: 764 TVDAKRLKEIQERESSQQTMSSHRVSQP------EECLNC 797



 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +IKRNG   ++D SKI R   +    ++       +  +++ + LT+Q 
Sbjct: 8  IIKRNGEAQTYDASKIRRRFERVMEGLDSDHLDVDMLTENVTRGLTDQI 56


>gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila]
 gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila SB210]
          Length = 2928

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/778 (35%), Positives = 432/778 (55%), Gaps = 32/778 (4%)

Query: 146  KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
             I+      ++ +  R++  +E     L    V+  +++ +    MYDG+  ++L+    
Sbjct: 2087 HIINRKNEKMNLDLIRIKERLEALTFNLDRNFVNMDLIIQKVVNGMYDGIHTTELDELAA 2146

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++  +    P+Y+   AR  +  L +E  ++ ++         +  LY        + G
Sbjct: 2147 ETAAYMTIIHPHYSLFAARIAVSNLHKETSSSFFE--------TISALYNYVDKSGRQAG 2198

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            + A+ ++E ++  +   +   + Y+RD+ +++ G + L   Y L I+G   E PQ   MR
Sbjct: 2199 LIAKDVYE-IVKENAEAIEKVINYDRDYTYDFFGFKTLERSYLLKIHGKIAERPQHMLMR 2257

Query: 324  VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
            V++G+  ++ E    A   YNL+S   F  +TPTLFNSGT  PQ+SSCFL  +  D + G
Sbjct: 2258 VSIGIHKRDLE---SAFRTYNLMSEKWFTHATPTLFNSGTPKPQMSSCFLLQMKGDSIEG 2314

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  L+++A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 2315 IYDTLKQSALISKSAGGIGISVHNIRARDSYIRGTNGISNGLVPMLRVFNDTARYVDQGG 2374

Query: 443  -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             KRKG+   YLE WH D+ EFL L+KN G + +R  D+  A WIPDLFMKRV  +  WTL
Sbjct: 2375 GKRKGSFAIYLEPWHSDIFEFLQLKKNHGKEEQRARDLFYALWIPDLFMKRVISDGTWTL 2434

Query: 502  FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
              P+E   L D++G EFE  Y  YE +         + I+A  LW+ ++    ETG P++
Sbjct: 2435 MCPNECPGLPDVWGDEFEALYTKYENEGKGR-----KTINARELWQDIVDSQIETGTPYM 2489

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDK 620
             +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI+L+     N ++DY K
Sbjct: 2490 LYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASISLVKFVKENGEYDYQK 2549

Query: 621  LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            L    +     L+ VID N + + +AK SN  HR IG+G+ G   A   + I + S EA 
Sbjct: 2550 LYEISKVVTFNLNKVIDENYYPVIEAKNSNMRHRPIGIGVQGLADAFIKMRISFESDEAQ 2609

Query: 681  EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
             + ++  E I F A  AS+E+A + G Y +FKGS   +G    D       +        
Sbjct: 2610 IVNEKIFETIYFGACEASMEIAIKEGPYETFKGSPASKGQLQFDLWNYKPHLCG------ 2663

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                 WD LK+++   GMRNS  ++  PTA+ + I G  +S +P   NLY +  ++G+F 
Sbjct: 2664 ---YDWDGLKQKIVEHGMRNSLLISPMPTASTSQILGNCESFEPYTSNLYTRRVLAGEFV 2720

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             +N  LV +L +R+LW+ ++ + L   +GS+  +  IPDD+K+++ T +E+    +I  A
Sbjct: 2721 CINPHLVQDLIERNLWNPSIKNQLLAFNGSVSQVPDIPDDIKQLYKTVWEVSQKAIINLA 2780

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
              R  +IDQ+QSLN+++ +PS  K+  ++  AW  GLKT  YYLRSR A    K TL 
Sbjct: 2781 VGRSPFIDQSQSLNIHISDPSYSKITSMHFYAWEKGLKTGMYYLRSRPAADPIKFTLD 2838


>gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 845

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/846 (46%), Positives = 536/846 (63%), Gaps = 47/846 (5%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALIFSSRT 208
           +  +  +  +  I+ +A +G +DV +  V+     ET +N+YDG S  ++  AL   +  
Sbjct: 3   STQTTQTNDVRTILNQARTGYEDVLTDEVMDRLVTETERNLYDGASIDEVYEALEGVTTA 62

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE++P Y  V A     +  R V     ++  +    +    Y E F   +E GV   L
Sbjct: 63  RIERDPAYKYVAADIHRRRYFRRVTG---EQLSETADDDTATTYRETFAANLERGVDEDL 119

Query: 269 LHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRV 324
           L E ++D  FD+  LA+ L  ERD  F+Y+ +  L  RYF+    +G  +E+PQAF+MRV
Sbjct: 120 LDERLLDGRFDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRV 179

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLA++E + + RA+EFY++LS   F  STPTLF+SGT HPQLSSC+LTTV DDL  IF
Sbjct: 180 AMGLAIEEDDPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIF 239

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            + + +A L+K+SGGLGNDWT +R  GA I  T  +S G +PFLK++ND   A+N+ GKR
Sbjct: 240 DSYKHHAQLSKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKR 299

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA C YLE WH+D   FLDLR+NTGD+RRRTHDMNTA W+PDLFM+RV  +  WTLFSP
Sbjct: 300 RGAACGYLEAWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSP 359

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV +LH+ YG+EF   Y  YE +A+ GE++ +  + A  LWR MLT LFETGHPWITFK
Sbjct: 360 DEVPELHETYGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFK 419

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCN+RSPQ HVG VHSSNLCTEITLN+S+EE AVCNLGS+NL  H A+++ D + LA T
Sbjct: 420 DPCNVRSPQDHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADT 479

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I TA R+LDNV+D+  +  ++A+ SN  HR +GLG+MGF  AL  +    AS EAVE A+
Sbjct: 480 IETATRMLDNVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAAN 539

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743
              EF+S+H I  S  LA+ERGAY +F+GS WD+G+ P D++  L   R  E+  +R+  
Sbjct: 540 RWQEFVSYHTILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERGREIPTDRSET 599

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           + WD ++  +   GMRNSN MAIAPTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N
Sbjct: 600 MDWDRVRDHIAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVIN 659

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             LV++LK   LWD+ M+  +K+ DGSI  +  IP+++++++ +AFEIDP   +   + R
Sbjct: 660 EQLVDDLKAEGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHR 719

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------ 917
            +WIDQ+ S N++     G  LD +Y+ AW +G+KTTYYLR+  A+ +EKSTL       
Sbjct: 720 GQWIDQSISHNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMAEYGR 779

Query: 918 -----------------------GVDGKLNAVPVTDPNSSTHSLGIPSSCT------SDT 948
                                    DG  +     D +++        +C        D 
Sbjct: 780 TQRRNESEATADRDSNDNGGNVTAADGDTDDSGEGDRDAAAGGDKTGEACDTSLARVEDP 839

Query: 949 ECEVCQ 954
            C+ CQ
Sbjct: 840 TCDACQ 845


>gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
 gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
          Length = 746

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/760 (35%), Positives = 412/760 (54%), Gaps = 34/760 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L    P+Y+K+ AR  +  L +                 M  LY        + G 
Sbjct: 61  TATYLTMTHPDYSKLAARIAVSSLHK--------MTSNKFSSVMDSLYNYV---NTKTGK 109

Query: 265 KARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + L+ + +++    +     + + YE+D  ++  G + +   Y   ING  +E PQ   
Sbjct: 110 WSPLIADDIIECIRSNAEVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHML 169

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+   + +    A+E Y LLS+  F  +TPT++N+GTR+PQ+SSCFL  +  D +
Sbjct: 170 MRVAIGIHCPDVDA---AIETYKLLSARVFTHATPTMYNAGTRNPQMSSCFLLKMKDDSI 226

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L+  A+++K +GG+G     VR   ++I GT G S G++P L+V ++TA  V+Q
Sbjct: 227 EGIFDTLKNCALISKNAGGIGVSIHNVRAQNSYIRGTGGYSNGLVPMLRVFDNTARYVDQ 286

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKRV     W
Sbjct: 287 GGGKRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNW 346

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P E   L D++G ++   YE YE +         + I A  LW  ++    ETG P
Sbjct: 347 SLFCPHECPGLSDVWGDDYVALYEKYESEGKAR-----KTIPAQKLWFAIMDSQIETGTP 401

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           ++ +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L A   +  FD+ 
Sbjct: 402 YMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVKDGTFDHQ 461

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L      A   LD VID N + I +A++SN  HR IGLG+ G      +L + + SP+A
Sbjct: 462 HLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDA 521

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  E  E + F A++AS +LA+ +G YS+++GS   QG F  D   +   V       
Sbjct: 522 RVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTPSV------- 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +  +SG+F
Sbjct: 575 ---RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEF 631

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI    LI+ 
Sbjct: 632 PVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDM 691

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           A+ R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 692 AADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi]
 gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi]
          Length = 812

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/827 (33%), Positives = 449/827 (54%), Gaps = 40/827 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+   G    F+S+++ + +++    L  ++   ++ +    +++ ++   L+  +    
Sbjct: 4   IVKKSGEKELFSSEKIRIRLQDHTKDLYHINIDSIIEKLQLEIHNDITTEKLDNLIAECI 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             +    P+Y K+  R  +  L +   +   +      +             +    + +
Sbjct: 64  AYMAYSHPDYLKLAGRVKVSTLHKHTKSKFSEVVHDLRNFI-----------HPRTNLPS 112

Query: 267 RLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFM 322
            L+ E + +    ++  L   +K ERDF F+Y G + L   Y L +  SRI E PQ  FM
Sbjct: 113 PLISEEVFNVVAANVDVLDQAIKSERDFQFDYFGYKTLERSYLLKLADSRIAERPQHMFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+   + E   RA++ Y+LLSS  F+ ++PTLFN+GT  PQ+SSCFL ++  D ++
Sbjct: 173 RVSLGIHGGDIE---RAIQTYDLLSSGMFIHASPTLFNAGTPIPQMSSCFLVSMKDDSIH 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLSVHNIRASGSYIRGTNGTSNGLIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ +FLDLRKN G +  R  D+    W+ DLFM+RV  +A W+
Sbjct: 290 GGKRKGAFAIYLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D++G+EF   Y  YER+         R I A  LW  ++    ETG P+
Sbjct: 350 LFCPNEAQGLADVWGEEFNQLYTKYEREGK-----AKRTIKAQELWFAIIEAQIETGVPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S QQ++G + SSNLCTEI   ++ +E AVCNL SI L  +       +D+
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASIALPKYVNEETQTYDH 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++ A   L+ +ID N + +E+AKKSN  HR IGLG+ G   A   + +P+ S E
Sbjct: 465 QKLYEVVKIATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  E  E I F A++ S+ELA+  G Y +++GS   +G+F  +      E  +   +
Sbjct: 525 AKNLNREIFETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTI 584

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W+ L+++V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+
Sbjct: 585 T-SGRWDWEGLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGE 643

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           + V+N  LV +L + D+W+  +++ +  + GSI NI+ IPDD+K+++ T +EI    L++
Sbjct: 644 YPVINRHLVADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLD 703

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A  R  +IDQ+QSLN+++  PS  K+  ++  AW  GLKT  YYLR++ A    + T+ 
Sbjct: 704 LAIERSPFIDQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTVD 763

Query: 918 -----------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                        +       V            P     + EC VC
Sbjct: 764 PNMMKQSVSTSQAEEPKQEEEVIVCKRKKRGQAPPEGEEDEEECLVC 810


>gi|190572322|ref|YP_001970167.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
 gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 775

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/819 (40%), Positives = 468/819 (57%), Gaps = 53/819 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  +L+   I 
Sbjct: 1   MSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELDELSIR 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y ++ AR L   + +EV                  +Y   F + +  G 
Sbjct: 61  TAALLIGEEPEYGRLAARLLANYIAKEVSGQ--------------EIYA--FSQSVSRGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
           +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L        IE PQ 
Sbjct: 105 EVGLINDRLLNFVQTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQ 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+R+A  L   E   E  A+  Y  + +  ++ S+PTLFNSGT H QLSSCFL   P D
Sbjct: 165 FFLRIASAL--SEDVSETLAL--YKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQD 220

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 221 SLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAV 280

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RR H++N ANW+PDLFMKRV  +  
Sbjct: 281 NQGGKRKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQE 340

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V +  DL+G+ FE AY   E Q         R ISA  L+ +M+  L ETG+
Sbjct: 341 WSLFDPRVVPEFTDLFGEAFEAAYLQAEAQGKAN-----RTISARKLYARMMRTLAETGN 395

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQ 615
            W+TFKD CN  S Q  +   V+H SNLCTEI   +S++ETAVCNLGSINL  HF   N+
Sbjct: 396 GWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE 455

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD++KLA T+R AVR LD VID+N + IE A+++N   R +GLG MG Q       +P+ 
Sbjct: 456 FDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFD 515

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  ++ +  E I FHA+  S ELAQERG + SF  +    G    D+  ++ E    
Sbjct: 516 SAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPE---- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L+ R+K  G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  +
Sbjct: 572 ------DTARWDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETL 625

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  VN +LVNELK+  LW   M   +K  +GSI  + +IP+ L++++ TA+E+    
Sbjct: 626 SGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRS 685

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR AT + K+T
Sbjct: 686 LIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 745

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +           V  P+ +     I  S  +   CE CQ
Sbjct: 746 VSAA----APAKVFSPDEA-----IACSLENPEACEACQ 775


>gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase, subunit alpha [Natrialba
           magadii ATCC 43099]
 gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba
           magadii ATCC 43099]
          Length = 836

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/828 (49%), Positives = 544/828 (65%), Gaps = 41/828 (4%)

Query: 162 LEMIVEEACSGLQDVSSK----IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
           +E +++ A +G ++V S      + +E  +N+YDG S  +   A++ +    IE+EP Y 
Sbjct: 15  IESVLDRAQTGTEEVLSPAERDQLATEIERNLYDGASPDECYQAILQALTARIEREPTYK 74

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-F 276
           ++ A    ++  R VL       +  T   ++  Y + F   +E  V+  LL E +++ F
Sbjct: 75  QLAAAVFRQRYYRTVLG------EDLTGAALETAYRDTFVTNLERAVELDLLDERLLERF 128

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE 334
           DL  LA  L+ ERD  FEY+ ++ L  RYFL    NG  +E+PQAF+MRVAMGLAL+E +
Sbjct: 129 DLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEEDD 188

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            ++RA+EFY++LS+  F  STPTLF+SG+ HPQLSSC+LTTV D L  IF + + +A L+
Sbjct: 189 PQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGGLGNDWT +R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CAYL  
Sbjct: 249 KWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYLAC 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D   F DL++NTGD+RRRT DMNTA WIPDLFMKRV  +  WTLFSPDEV +LHDL 
Sbjct: 309 WHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHDLS 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+ FE  Y  YERQAD GE++ + ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ 
Sbjct: 369 GEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSPQD 428

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           HVG VHSSNLCTEITLN+S++E AVCNLGS+NL  H ++ + D + LA TI TA+R+LDN
Sbjct: 429 HVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRMLDN 488

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+D+  +  E+AK+SN  HR +GLG MGF  AL  L IP  S +AVE A+   EF+S+HA
Sbjct: 489 VVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSYHA 548

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753
           I  S +LA ERGAY S++GS WD+G+ P D++ LL + RD E+  +R   L W  +++ V
Sbjct: 549 ILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDERDREIPTDREETLEWATVREHV 608

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFTV+N  LV +LK R
Sbjct: 609 AEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADLKAR 668

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           D WD+ M+  LK+HDGS+  I+ +PDDL++++  AFEIDP   +   + RQ WIDQ+ S 
Sbjct: 669 DRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQSVSH 728

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL----------KGVDGKL 923
           N++     G  LD +YR AW +GLKTTYYLR+  A+ +EKSTL          +  D   
Sbjct: 729 NVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDMGEYGKTQHRDSDSAA 788

Query: 924 NAVPVTDPNSSTHSLGIPS-----------------SCTSDTECEVCQ 954
                 D +++T S   P                      D  CE CQ
Sbjct: 789 RFDGDDDDSTNTDSDPDPGSGSDTDSDSDPGSGDELCRVDDPTCEACQ 836


>gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
 gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
          Length = 855

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/826 (32%), Positives = 428/826 (51%), Gaps = 50/826 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACS---GLQD--VSSKIVLSETYKNMYDGLSES 196
             K+ ++  DG   +    ++   +   C     L +  V    V  +    ++ G+  +
Sbjct: 13  DSKMYVIKRDGQKQNVTFDKITSRIRFLCEMEPRLNEEIVDPAEVAQKVISGVFPGVKTT 72

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+     ++  +  + P+Y  + AR  +  L ++  T++ +  +            +Y 
Sbjct: 73  ELDNLAAETAAYMSTRHPDYGVLAARISVSNLHKQTSTSLVETVK-----------IQYE 121

Query: 257 CRYIEEGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
               +  + A L+ + + D        L   + Y+RDF +++ G + L   Y   IN S 
Sbjct: 122 YINSKTNLPAPLVSKELYDIVNEHAERLEKAIDYQRDFDYDFFGFKTLERSYLHRINNSI 181

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ   MRV++G+   + +    A+  Y  LS   F  +TPTLFN+GT +PQ+SSCFL
Sbjct: 182 VERPQHMLMRVSIGIHGNDIDN---AILTYEKLSQKLFTHATPTLFNAGTPYPQMSSCFL 238

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P L+V N
Sbjct: 239 VQMKEDSIDGIYDTLKQCALISKSAGGIGIACHKIRAAQSYIRGTNGTSNGLVPMLRVFN 298

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           DTA  V+QGG KRKGA   YLE WH D+ EF++L+KN G +  R  D+  A W+ DLFM+
Sbjct: 299 DTARYVDQGGGKRKGAFAVYLEPWHSDIFEFIELKKNHGKEEMRARDLFYALWVSDLFME 358

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV QN  W+LF P+E   L + + +E    Y  YE           R I A  LW  ++ 
Sbjct: 359 RVEQNGDWSLFCPNEAPRLDETHSEEHRELYLKYENTPG----LARRVIKAQELWFAIME 414

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L    
Sbjct: 415 SQVETGTPFILYKDSCNSKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFI 474

Query: 612 ---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                       +FD+ KL    +   + L+ +ID N + +++AK SN  HR IG+G+ G
Sbjct: 475 RRKEGSTNPKEKEFDHQKLYEITKIVTKNLNKIIDRNYYPVQEAKTSNLRHRPIGIGIQG 534

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
                  L +P+    A ++  E  E I F A++AS EL+   G Y +FKGS   QG+  
Sbjct: 535 LADVFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLIEGPYETFKGSPASQGILQ 594

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANICGVSQS 781
            D   +            T+R  W +LK ++    G+RNS  +A  PTA+ + I G ++ 
Sbjct: 595 YDFWNVTP----------TNRWNWTDLKDKIVNKGGLRNSLLIAPMPTASTSQILGNNEC 644

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  ++G+FT+VN  L+ +L +  +W   + + +  + GSI +I  IPDDL
Sbjct: 645 FEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQIVLNRGSIQSIPSIPDDL 704

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  +W  GLKT  
Sbjct: 705 KELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGM 764

Query: 901 YYLRSRSATSVEKSTLK-GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           YYLR+R A    + T+   V      V        T +   PSS  
Sbjct: 765 YYLRTRPAADAIQFTVDPTVQQTPKPVEKDQTPLKTPTNKTPSSLN 810


>gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 99B1]
          Length = 746

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/760 (34%), Positives = 409/760 (53%), Gaps = 34/760 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L    P+Y+K+ AR  +  L +                 M  LY        + G 
Sbjct: 61  TATYLTMTHPDYSKLAARIAVSSLHK--------MTSNKFSSVMDSLYNYV---NTKTGQ 109

Query: 265 KARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + L+ + +++    +     + + YE+D  ++  G + +   Y   ING  +E PQ   
Sbjct: 110 WSPLIADDIIECIRSNADVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHML 169

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+   + +    A+E Y LLS   F  +TPT++N+GT++PQ+SSCFL  +  D +
Sbjct: 170 MRVAIGIHCPDVDA---AIETYKLLSQKKFTHATPTMYNAGTKNPQMSSCFLLKMKDDSI 226

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  ++  A+++K +GG+G     VR   ++I GT G S G++P L+V + TA  V+Q
Sbjct: 227 EGIFDTIKNCALISKNAGGIGVSIHNVRAQNSYISGTGGYSNGLVPMLRVFDSTARYVDQ 286

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG +RKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKRV     W
Sbjct: 287 GGGRRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNW 346

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P E   L D++G ++   YE YE +         + I A  LW  ++    ETG P
Sbjct: 347 SLFCPHECPGLSDVWGDDYVALYEKYESEGKAR-----KTIPAQKLWFAIMDSQIETGTP 401

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           ++ +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L +   +  FD+ 
Sbjct: 402 YMLYKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVKDGSFDHQ 461

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L      A   LD VID N + I +A++SN  HR IGLG+ G      +L I + SP+A
Sbjct: 462 HLYDVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKISFDSPDA 521

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  E  E + F A++AS +LA+ +G YS+++GS    G F  D   +   V       
Sbjct: 522 RVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTPSV------- 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +  +SG+F
Sbjct: 575 ---RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEF 631

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI    LI+ 
Sbjct: 632 PVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDM 691

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           A+ R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 692 AADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica]
 gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica]
          Length = 849

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/831 (32%), Positives = 429/831 (51%), Gaps = 58/831 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  +    +   C  L  V S+  +  +T    +DG+S  +L     
Sbjct: 1   MHVVKRGGQREPMDMAKFTRRLTALCFNLSSVVSATEIAQKTVDGAFDGVSTVELNNLAS 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  L+ + P+Y  + AR  +  L ++                MQ LY        E G
Sbjct: 61  ETAAALMTRHPDYGVLAARLSVSNLHKQTSDKFVN--------VMQQLYDNKD----ETG 108

Query: 264 VKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
             A L+  ++++    +   L   + Y RD  + Y G + L   Y L + G+ +E PQ  
Sbjct: 109 EHAPLVTLALLERAQNHGETLELAISYYRDMTYSYFGFKTLEKSYLLRVGGNVVERPQHM 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DD 379
            MRVA+G+   +  K +   E Y  LS   F  ++PTLFN+GT   QLSSCFL  +  D 
Sbjct: 169 LMRVALGIHGDDIFKVR---ETYQALSLRKFTHASPTLFNAGTPQGQLSSCFLVAMAADS 225

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+  A ++K +GG+G     +R  GA I G+ G+S G++P L+V N+TA  V+
Sbjct: 226 IDGIYDTLKTCAQISKTAGGIGLHIHNIRAKGALITGSQGRSSGIVPMLRVFNNTARYVD 285

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH D+ +FL+LRKN G +  R  D+  A W+PDLFM++V     
Sbjct: 286 QGGNKRPGAFAVYLEPWHADILDFLNLRKNHGAEENRARDLFYALWVPDLFMRKVENGEK 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P +   L D++G+EF+  YE+YE +          +I A  L++ +LT   ETG 
Sbjct: 346 WSLFCPRKAPGLADVWGEEFDRKYEDYESKGLYNS-----QIDAQELFKAILTSQIETGG 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANN 614
           P++ +KD CN +S Q+++G + SSNLCTEI   SS +E AVCNL S+ L        ++ 
Sbjct: 401 PFMLYKDSCNAKSNQKNLGTIKSSNLCTEIVQYSSPDEVAVCNLASVALPEFVQLKGSSG 460

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ +L  T++   R L+ +I+ NC+ +++A+ SN  HR I +G+ G       L +P+
Sbjct: 461 SYNFGELHETVKHMTRNLNCIIEANCYPVKEAETSNKRHRPIAVGVQGLADVFMKLRMPF 520

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPEA E+     E I   A  AS+ELA E G Y +++GS   QG    D          
Sbjct: 521 DSPEAAELNVLIFETIYHAACEASIELAAELGPYETYEGSPASQGKLQFDLWNKTP---- 576

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    W  LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y++  
Sbjct: 577 ------SDLWDWARLKTKLAKHGMRNSLLVAPMPTASTSQILGHNECFEPYTSNIYLRRV 630

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +G+F VVN +L+ +L +  +W E M + + + +GSI +I +IP+ ++ ++ TA+EI   
Sbjct: 631 QAGEFLVVNQWLMKDLIKLGMWTEEMKNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKAR 690

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+QSLN+++ E +  K+  ++   W  GLKT  YYLR+  A    +
Sbjct: 691 NIIDMAAARAPYIDQSQSLNIFMPEITHGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQ 750

Query: 914 STLK------------GVDGKLNAVP-----VTDPNSSTHSLGIPSSCTSD 947
            T+              VD  +   P        P+  +     PSS + D
Sbjct: 751 FTVDKTLLQNIQDPVGEVDPVVYEPPSMPWASESPSGPSTRASTPSSLSRD 801


>gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 840

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/801 (33%), Positives = 435/801 (54%), Gaps = 47/801 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
            H +  A       ++  DG   + + +++   ++   S LQ ++  +++ +  + MY+G
Sbjct: 10  EHLQELAKQKNISYVLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEG 69

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++   L+     +   +    P Y+ + AR  +  L +E   +  +   K   H     Y
Sbjct: 70  ITTVQLDNLAAETCAYMNLVHPQYSLLAARIAVNNLHKETSESFSEVATKL--HSFTDKY 127

Query: 253 PEYFCRYIEEGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
                     G  A L+ + +      +   + N++ Y+RD+ +++ G + L   Y L  
Sbjct: 128 ----------GRPAPLIADDVYKIIMENKDIIQNEINYDRDYQYDFFGFKTLERSYLLKE 177

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
               IE PQ   MRV++G+     E  + A + Y+L+S  +F  +TPTLFNSGT +PQ+S
Sbjct: 178 GKKPIERPQQLLMRVSIGIH---KEDLQSAFQTYHLMSQKYFTHATPTLFNSGTPYPQMS 234

Query: 370 SCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL   V D + GI+  L+  A+++K +GG+G   + +R   ++I GTNG S G++P L
Sbjct: 235 SCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSASKIRSQDSYIRGTNGISNGLVPML 294

Query: 429 KVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           KV NDTA  V+QGG KRKG+   YLE WH D+  FL LRKN G + +R  D+    WIPD
Sbjct: 295 KVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPD 354

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFM+RV  ++ WTL  P+E   L D YG+EF   Y +YE +           + A  LW+
Sbjct: 355 LFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYTDYESKNMGRV-----TMKARQLWQ 409

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +++     TG P++ +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SINL
Sbjct: 410 EIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINL 469

Query: 608 LAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                 +  FD+DKL    +     L+ VID+N + +++A+ SN  +R IG+G+ GF  A
Sbjct: 470 QKLIKEDKTFDFDKLLEITKIITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADA 529

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  + IP+ S +A+E+  +  E I + A   S+ELAQ+ G Y +F GS   QG+   D  
Sbjct: 530 LQRMKIPFDSEDALELNAKIFETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMW 589

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G+  ++             W+ LK+ +   GMRNS  +A  PTA+ + I   ++S +P  
Sbjct: 590 GVSPKL-----------YDWNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYT 638

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+Y +  ++G+F  +N  LV++L + +LW   + + L  ++GS+ NIE IP+++K ++ 
Sbjct: 639 TNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYK 698

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG---------- 896
           T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  K+  ++  A   G          
Sbjct: 699 TVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYIT 758

Query: 897 LKTTYYLRSRSATSVEKSTLK 917
           +K  YYLR+R A    K T+ 
Sbjct: 759 IKGMYYLRTRPAADPIKFTVD 779


>gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/777 (33%), Positives = 425/777 (54%), Gaps = 32/777 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L  E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHNET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L D +G EFE  YE YE+Q         +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQGR-----YVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A E+
Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+  
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTVDK 755


>gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni]
 gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni]
          Length = 768

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/762 (36%), Positives = 417/762 (54%), Gaps = 33/762 (4%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +    +Y G++  +L+      +  L     +YA + AR  +  L +E         
Sbjct: 33  ITLQVINGLYCGVTTQELDNLAAEIAAGLTCNHADYAILAARIAVSNLHKET-------- 84

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           +K      + LY                 H +++  +   L + + Y+RDF + Y G + 
Sbjct: 85  KKVFSEVFEELYHHVNKETNNPSPMVSSYHYNIVKNNADRLNSAMIYDRDFGYNYFGFKT 144

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L ING   E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF 
Sbjct: 145 LERSYLLKINGKVAERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFA 201

Query: 361 SGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           + T  PQLSSCFL T+  D + GIF  +++ AM++K +GG+G +   +R  G  I GTNG
Sbjct: 202 AATNRPQLSSCFLLTMTSDSIEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNG 261

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P L+V N+ A  V+QGG KR GA   YLE WH D+ EFLDL++NTG +  R  D
Sbjct: 262 TSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDIFEFLDLKRNTGKEEHRARD 321

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A WIPDLFMKRV  N  W+L  P +   L D++G +FE  Y  YE++         R
Sbjct: 322 LFYALWIPDLFMKRVEANEDWSLMCPHKCPGLEDVWGDKFEELYVKYEKEGLAN-----R 376

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A +LW  ++    ETG+P++ FKD CN +S QQ+VG +  SNLCTE+   S+ +E A
Sbjct: 377 IVKAQSLWFAIIESQVETGNPYMLFKDSCNKKSNQQNVGTIKCSNLCTEVVEYSAPDEIA 436

Query: 599 VCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           VCNL SI L      +  +D+ KL    +   + L+ +ID+N + + +AKKSN  HR IG
Sbjct: 437 VCNLASIALNMFVTTDKTYDFKKLKEVTKIVAKNLNKIIDVNYYPLPEAKKSNLKHRPIG 496

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   AL L+ +PY S +A  +  +  E I F A+ AS ELAQ  G Y +FKGS   
Sbjct: 497 IGVQGLADALILMRLPYESKQACLLNQQIFETIYFGALEASCELAQMYGPYETFKGSPAS 556

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D                +    W++LK  +K  G+RNS  +A  PTA+ A I G
Sbjct: 557 RGILQYDMWNKKP----------SDLWDWNKLKAAIKEHGIRNSLLVAPMPTASTAQIMG 606

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++S +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE I
Sbjct: 607 NNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNKIVSSRGSIQNIEVI 666

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GL
Sbjct: 667 PQNVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKSGL 726

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           KT  YYLR++ A    + T+   D   +A  ++  N S  + 
Sbjct: 727 KTGMYYLRTKPAAHAIQFTV---DKNASATIISSQNGSIKAE 765


>gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Anolis carolinensis]
          Length = 745

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/821 (33%), Positives = 424/821 (51%), Gaps = 90/821 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRHERVMFDKITSRIQKLCYGLNVDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYTYVNPHNSK- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +  +D  L     L + + Y+RDF++ Y G + L   Y L IN    E PQ 
Sbjct: 112 --HSPMIAKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIHKNDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKHCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q      +V R + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRRVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S QQ++G +  SNLCTEI   +S++E                     
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSNDE--------------------- 440

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                                       A+ SN  HR IG+G+ G   A  L+  P+ SP
Sbjct: 441 ----------------------------AEVSNKRHRPIGIGVQGLADAFILMRFPFESP 472

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E I + A+ AS  LA+E G Y +++G    +G+   D   ++        
Sbjct: 473 EAQLLNQQIFETIYYAALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVP------- 525

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG
Sbjct: 526 ---TDLWDWKALKEKIAKHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSG 582

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN  L+ +L +R LW+E M + +   +GSI  I  IPDDLK ++ T +EI    ++
Sbjct: 583 EFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVL 642

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 643 KMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 702

Query: 917 KGVDGKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVC 953
                      + +         +   +  S  +  EC +C
Sbjct: 703 NKEKLNKEKSSIGEEEEEAKKERNKAAMVCSLENRDECLMC 743


>gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 792

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/822 (40%), Positives = 480/822 (58%), Gaps = 53/822 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P + +   +G L   +  ++   V+   +GL  V +  V S+T   +YDG +  +L
Sbjct: 18  KEEIPVMHVRKRNGELEPVDVNKIVRAVQRCSAGLSQVDAIRVASKTIGGLYDGATTREL 77

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT-VYKKPQKATHHEMQCLYPEYFC 257
           +   I ++ +LI +EP Y+K+ AR LL  + +EV    ++   Q   +   + +      
Sbjct: 78  DAISIDTAASLIAEEPQYSKLAARLLLGTILKEVAGQNLHSFSQSIEYAHQEGVVNAATA 137

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIE 315
            ++         H   +++ +    +D        FE+ GL+ +YDRY L    +   IE
Sbjct: 138 EFVRT-------HARKLNYAIDEQLSD-------RFEFFGLRTVYDRYLLRDPLSRKVIE 183

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ FF+RVA GLA    E    A+EFY L++S  +M S+PTLFNSGT+HPQ+SSC+L  
Sbjct: 184 TPQYFFLRVACGLAGTPHE----AIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSCYLHD 239

Query: 376 VP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            P D L  I+   ++ A+L+K+SGG+G  +  VR  G+ I  TNG S G++P+L+  + +
Sbjct: 240 SPSDSLESIYDTYKDVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDSS 299

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AVNQGGKRKGA C YLE WH DVE+FL+LR+NTGD  RRT+++N ANWIPDLFM+RV 
Sbjct: 300 VAAVNQGGKRKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVE 359

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W+LF P  V  L DLYG EF+ AYE  E      E    R+I A  L+ +M+  L 
Sbjct: 360 EDGMWSLFDPKVVPQLPDLYGVEFDAAYEKAEA-----EQLYARQIKARDLYARMMRSLA 414

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           ETG+ W+TFKD CN++  Q  +   VVH SNLCTEIT  +S +ETAVCNLGSINL  H A
Sbjct: 415 ETGNGWMTFKDACNLKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLARHVA 474

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N  FD++KLA T+R AV +LD VIDIN + + +A  +N   R +GLGLMG Q     L +
Sbjct: 475 NGAFDFEKLAETVRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFFQLRM 534

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ SPEA +++    E I +HA++AS ELA+++GA+ +F  +    G    D  G+    
Sbjct: 535 PFDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGVKP-- 592

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        W+ L+ R++  G+RNS  +AIAPTATIA+I G  +  +P   NL+ +
Sbjct: 593 --------ADEARWNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLFKR 644

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F  VN +LV +LK+R LW+E +   LK  +GS+  I+ IPDDLK+I+ T +E+ 
Sbjct: 645 ETLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWELP 704

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              +I+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  AW  GLKTTYYLRSR AT + 
Sbjct: 705 MRAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPATRIA 764

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           K+T+        AV                S  +   CE CQ
Sbjct: 765 KTTVASAKNATAAV--------------ACSLENPGSCEACQ 792



 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
           +P  E+I  + V KRNG +   D +KI RA+ +
Sbjct: 14 GFPAKEEIPVMHVRKRNGELEPVDVNKIVRAVQR 47


>gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 799

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/823 (34%), Positives = 433/823 (52%), Gaps = 47/823 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  + 
Sbjct: 7   MIIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVA 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++   + K P+Y ++  R     L ++   ++ +  +    H             ++  
Sbjct: 67  QTAAYSVTKHPDYGRMGGRLCTTSLHKQTNASLLETFRLLHDHVT-----------VQTN 115

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IE 315
             A L+   + +        L   + Y RD +FE+ G + L   Y L I   R     +E
Sbjct: 116 RPAPLIAGDVWEVMQQHHKELQGMIDYSRDLSFEFFGYKTLERSYLLRIESGRGEMRIVE 175

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ  FMRVA+G+   + +  +   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  
Sbjct: 176 RPQQMFMRVALGIHGTDLKNVR---ETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVA 232

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+T
Sbjct: 233 SKEDSIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNT 292

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KRKGA   YLE WH D+  FL L++NTG D +R  D+  A WIPDLFM+RV
Sbjct: 293 ARYVDQGGGKRKGAFAVYLEPWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRV 352

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                WTL  P+    L D YG+EFE  YE YE +         + I A  +W  +L   
Sbjct: 353 KSEGKWTLMDPNTCPGLSDCYGEEFERLYERYESEGRG-----VKTIQAQEVWFAILESQ 407

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
            ETG P+I +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L      
Sbjct: 408 IETGGPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDV 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +F++  L +  +   R L+ VID N + +E A+ SN  +R IGLG+ G   A  L+ 
Sbjct: 468 EKREFNHQLLYTVTKQITRNLNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  E  E I F A+ +S+ELA+E G Y +FKGS   +G+   D       
Sbjct: 528 LPFVSAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKNPRP 587

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    + R  W  LK++V  +G+RNS  +A  PTA+ + I G ++  +P   N+YV
Sbjct: 588 --------NSGRWDWASLKEKVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYV 639

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  IPDDL++++ T +EI
Sbjct: 640 RRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEI 699

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A  
Sbjct: 700 PQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAAD 759

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K T+   D K         NS           +   EC  C
Sbjct: 760 AIKFTV---DAKRMKEIQERENSQQTMSS--RRASQPEECLNC 797



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +IKRNG    +D SKI R   +    ++       +  +++ + LT+Q 
Sbjct: 8  IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQI 56


>gi|331235025|ref|XP_003330173.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309309163|gb|EFP85754.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 805

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/741 (37%), Positives = 415/741 (56%), Gaps = 31/741 (4%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +  + P+YA + AR  +  L +E         +K     ++ LY                
Sbjct: 1   MTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYTYVNPINGRPSSMISQ 52

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
                +  +   L + + Y+RDF + Y G + L   Y L I G   E PQ   MRVA+G+
Sbjct: 53  ETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIKGKVAERPQHMLMRVAVGI 112

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL 387
              + EK   A+  YNL+S  +F  ++PTLFN+GT HPQLSSCFL     D + GI+  L
Sbjct: 113 HGMDVEK---AIRTYNLMSEKYFTHASPTLFNAGTPHPQLSSCFLVASKSDSIDGIYDTL 169

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 170 KTCAMISKSAGGIGLHINNIRATGSYISGTNGYSNGIVPMLRVFNNTARYVDQGGNKRPG 229

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV ++LDLRKN G +  R  D+  A WIPDLFM RV +N  W LF P E
Sbjct: 230 AFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFCPAE 289

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  +  YE+     E +  + + A  LW  +L    ETG+P++ +KD 
Sbjct: 290 APGLADVYGEEFEALFAKYEK-----ENRAKKTVKAQKLWYAILEAQTETGNPFMLYKDA 344

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N +S Q+++G + SSNLCTEI   S+ +E AVCNL SI L  +  + ++D++KL    +
Sbjct: 345 ANKKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIVDGKYDFNKLHEVTK 404

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
                L+ +ID+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA ++  + 
Sbjct: 405 EVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNTQI 464

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E +   ++ AS ELA + G Y +F GS   QG+   D   +            +    W
Sbjct: 465 FETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWNVKP----------SDLWEW 514

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D LK++VKT G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L
Sbjct: 515 DSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWL 574

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           + EL +  LWD+ M + +  H GSI NI  IP ++K ++ T +EI    +++ A+ R  +
Sbjct: 575 LKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADRGAF 634

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL--KGVDGKL 923
           IDQ+QSLN++L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T+  K  D   
Sbjct: 635 IDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKKLQDEAK 694

Query: 924 NAVPVTDPNSSTHSLGIPSSC 944
            A       SS+ +L +PSS 
Sbjct: 695 AANKAATLVSSSATLLVPSSA 715


>gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
 gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
          Length = 838

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/803 (35%), Positives = 426/803 (53%), Gaps = 29/803 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +   T       +  H  +      +     EE  
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHK-TTTESVLDSFRVLHEHVSQATRRHAPLISEELW 126

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                H          L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 127 DIANKHS-------AALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            F+RVA+G+  ++ E   R  E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLE---RVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER+         R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYEREGRG-----VRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G      LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGVQGLADTFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---D 734
           EA ++  +  E I F A+ AS ELA++ G Y +FKGS   +G    D       +R   +
Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +   +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLQLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSSTH 936
            TL     K    P        H
Sbjct: 772 FTLDPKAMKELPKPDKQSKEEVH 794


>gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 838

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/803 (35%), Positives = 427/803 (53%), Gaps = 29/803 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +   T       +  H  +      +     EE  
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHK-TTTESVLDSFRVLHEHVSQATKRHAPLISEELW 126

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                H          L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 127 DIANKHS-------AALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            F+RVA+G+  ++ E   R  E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLE---RVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER+         R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYEREGRG-----VRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G   A  LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---D 734
           EA ++  +  E I F A+ AS ELA++ G Y +FKGS   +G    D       +R   +
Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +   +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSSTH 936
            TL     K    P        H
Sbjct: 772 FTLDPKAMKELPKPDKQSKEEVH 794


>gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 752

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/775 (36%), Positives = 435/775 (56%), Gaps = 40/775 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG     +  ++    E    GL+ V    V       +YDG+  ++++  L  
Sbjct: 1   MDVIKRDGRKEKASLDKVTRRAEALADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAE 59

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +L  + P+YAK+ AR ++  L++E                    Y        E G+
Sbjct: 60  TAASLATEHPDYAKLAARVMVSSLQKETSG-----------------YATATRELSEIGI 102

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            +    +         L   + Y+RD+ F+Y G + L   Y L + G  +E PQ  FMRV
Sbjct: 103 LSDTYVDFAAKNQFA-LEEMIDYKRDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRV 161

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+ +A  + E+ +   E Y+LLS  ++  +TPTLFN+G +  QLSSCFL  +  D + GI
Sbjct: 162 AVAVAGDDLEEIR---ELYDLLSHGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGI 218

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           +  L++ A+++K +GG+G     +R  GA I GTNG S G++P LKV N+TA  V+QGG 
Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGG 278

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKG+   YLE WH D+E FLDLRKN G +  R  D+  A W+PDLFM+RV  +A WTLF
Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLF 338

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP     L DLYG EF   Y+ YER          + I A  L  +++    ETG P++ 
Sbjct: 339 SPHNTKGLSDLYGAEFTQKYQEYERMGLG-----VKTIKARQLMTQIIESQAETGTPYML 393

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S Q+++G + SSNLC EI   S+ +ETA CNL S+ L     ++ FD+DKL 
Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVTDSGFDFDKLH 453

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              + A++ LD VID+N H  +K +KSNH HR +GLG+ G       +H+P+ S EA+++
Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQL 513

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E +   ++ AS E+A ++GAYSS+ GS    G F  D                +S
Sbjct: 514 NRDIAETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQP----------SS 563

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  W +LK+++   G+RNS  +A  PTA+ A I G +++ +    N+Y +  +SG+F ++
Sbjct: 564 RWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIII 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV++L+QR LW   +   +  ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ 
Sbjct: 624 NKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAA 683

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           R  ++ Q+QSLNL+L  P+  +++ ++  AW  GLKT  YYLRS+ +T+  K T+
Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738


>gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 838

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/845 (38%), Positives = 481/845 (56%), Gaps = 56/845 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
             S    + P    +++   +G+    +  ++   V  +C+ L DV +  V ++T   +Y
Sbjct: 29  MTSAGAEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDALRVATKTISGLY 88

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG +  +L+   I ++ +LI  EP YAK+ AR L   + +EV                  
Sbjct: 89  DGATTRELDQLSIQTAASLIADEPQYAKLAARLLATYIDKEVRNQE-------------- 134

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                F + +  G +  L+++ +  F   +   L + ++  RD   EY GL+ LYDRY L
Sbjct: 135 --IHAFSQSVAVGRRLGLINDRLHGFVAQNARKLNDAIEPARDHELEYFGLRTLYDRYLL 192

Query: 308 HINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
               +R  IE PQ FF+R+A  L    +E   +AVE Y L SS  ++ S+PT+FNSGT H
Sbjct: 193 KHPETRLVIETPQQFFLRIACAL----SETAAQAVELYRLFSSLDYLPSSPTMFNSGTSH 248

Query: 366 PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            QLSSCFL   PDD L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G+
Sbjct: 249 EQLSSCFLLDSPDDHLETIYQRYTDVAMLSKFSGGIGLAYHRVRSRGSLIRATNGHSSGI 308

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P+LK  + +  AVNQGGKRKGA C YLE WH DVEEFL LR NTGD+  RTH++N A+W
Sbjct: 309 VPWLKTLDASVAAVNQGGKRKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASW 368

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PDLFMKRV  +  W+LF P +  DL DLYG+EFE  Y   ER          + + A  
Sbjct: 369 VPDLFMKRVEADGDWSLFDPKDARDLPDLYGEEFERRYVEAERAGL-----AKKTMKARE 423

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNL 602
           L+ +M+  L +TG+ W+TFKD  N    Q  +   +VH SNLCTEI   +S+EE+AVCNL
Sbjct: 424 LYARMMRTLAQTGNGWMTFKDKSNRACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNL 483

Query: 603 GSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           GSINL  H A        FD++KLA T+RTAVR LD VID+N + I   ++SN   R +G
Sbjct: 484 GSINLARHTATLADGAVAFDFEKLARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVG 543

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LGLMG Q     + +P+ +P A E++    E + +HA+S S +LA E+G + +F  +   
Sbjct: 544 LGLMGLQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAA 603

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G    D+ G + E              W+ L+ RV+  G+RNS  +AIAPTATIA+I G
Sbjct: 604 RGELQFDAWGAVPE----------DAARWEALRARVQAEGLRNSLLVAIAPTATIASIAG 653

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
             + I+P   NL+ +  +SGDF  +N +LV ELK+   W++A+ + LK  +GS+  ++ +
Sbjct: 654 CYECIEPQVSNLFKRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDEL 713

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+ ++ +  TA+EI    LI+ A+ R  +IDQ+QSLNL+++ P+  +L  +Y  AW  GL
Sbjct: 714 PEQIRAVFRTAWEIPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGL 773

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKL---NAVPVTDP-----NSSTHSLGIPSSCTSDTE 949
           KTTYYLRSR AT + K+T++    +    +A P  +        +  +  +  +  +   
Sbjct: 774 KTTYYLRSRPATRIAKATVEAPPDRTPGDDAAPRREGGWVPAPPAKAAADVACALENPEA 833

Query: 950 CEVCQ 954
           CE CQ
Sbjct: 834 CEACQ 838



 Score = 41.3 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 10 GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
          G E+  P            ++V KRNG     D +KI RA+ ++  A+    A
Sbjct: 33 GAEETPPHTT---------MRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDA 76


>gi|157871642|ref|XP_001684370.1| ribonucleoside-diphosphate reductase large chain [Leishmania major
           strain Friedlin]
 gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania major strain Friedlin]
          Length = 799

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/824 (34%), Positives = 437/824 (53%), Gaps = 49/824 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  + 
Sbjct: 7   MIIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVA 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++   + K P+Y ++  R     L ++   ++ +  +    H             ++  
Sbjct: 67  QTAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLETFRLLHSHVT-----------VQTN 115

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IE 315
             A L+ + + +        L   + Y RD  FE+ G + L   Y L I   R     +E
Sbjct: 116 RPAPLIADDVWEVMKQHHAELQGMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVE 175

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ  FMRVA+G+   + +  +   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  
Sbjct: 176 RPQQMFMRVALGIHGADLKNVR---ETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVA 232

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+T
Sbjct: 233 SKEDSIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNT 292

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV
Sbjct: 293 ARYVDQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRV 352

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                WTL  P+    L D YG+EFE  YE YE +         + I A  +W  +L   
Sbjct: 353 KSEGKWTLMDPNTCPGLSDCYGEEFERLYERYESEGRG-----VKTIQAQEVWFAILESQ 407

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA- 612
            ETG P+I +KD CN +S Q+++G +  SNLCTEI   +SS+ETAVCNL SI L      
Sbjct: 408 IETGGPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEV 467

Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + ++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ 
Sbjct: 468 EKRELNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D       
Sbjct: 528 LPFVSAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMWKN--- 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV
Sbjct: 585 -----ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYV 639

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI
Sbjct: 640 RRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEI 699

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               LI+ A  R ++IDQ+QSLNL+L  P+  ++  +   +W  GLKT  YYLR+++A  
Sbjct: 700 PQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAAD 759

Query: 911 VEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K T+      ++     +    S+H    P       EC  C
Sbjct: 760 AIKFTVDAKRMKEIQERETSQQTMSSHRASQP------EECLNC 797



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +IKRNG    +D SKI R   +    ++       +  +++ + LT+Q 
Sbjct: 8  IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQI 56


>gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 801

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/828 (39%), Positives = 482/828 (58%), Gaps = 53/828 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DGTL   +  ++   V + C GL  V    V ++    +YDG S  +L+   I 
Sbjct: 9   MRVKKRDGTLEPVDVTKIVERVTKNCQGLTQVDPLRVATKAISGLYDGASTKELDNLCIQ 68

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI ++P Y+++ AR L   +  EV +                   + F   +  G 
Sbjct: 69  TASLLIGEDPEYSRLAARLLSTYIDEEVRSQK----------------IQSFADSVSFGY 112

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
           +A LL E    F   +   L   ++  R   FEY GL+ +YDRY L         E PQ 
Sbjct: 113 QAGLLAEHTYKFVETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQVFETPQY 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FFMRVA GLA       + A+EFY L+SS  +M STPTLFNSGT  PQ+SSC+L   P D
Sbjct: 173 FFMRVACGLAQS----VEEAIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYLLDSPSD 228

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I+    + A+L+K++GG+G  ++ VR  G+ I GTNG S G+IP+LK  + +  AV
Sbjct: 229 DLSAIYQKYTDIALLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMDSSVAAV 288

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+EEFL+LR NTGD+ +R H++N ANW+PDLFMKRV  +A 
Sbjct: 289 NQGGKRKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAM 348

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V    D YG+EFE AY   E +         +++ A  L+ +M+  L +TG+
Sbjct: 349 WSLFDPKVVPHFVDTYGEEFEKAYVEAEEK-----KLYIKQLKARDLYSRMMKTLAQTGN 403

Query: 559 PWITFKDPCN-IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N   +     G V+H SNLCTEI   +S +ETAVCNLGS+NL  H  N QF
Sbjct: 404 GWMTFKDHANLKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARHVENGQF 463

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KLA ++RTAV+ LD V+DIN + I  A+ SNH  R +GLG+MG Q AL L+ +P+ S
Sbjct: 464 NFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLMKLPFDS 523

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             A +++ +  E I ++A+  S EL+++ G + +F+ +   +G+   D  G+     +  
Sbjct: 524 AAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTPSQPERF 583

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                     ++LK+++K  G+RNS  +AIAPTATIA+I G  ++I+P   NL+ +  +S
Sbjct: 584 ----------EKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETLS 633

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F  +N +LV++LK   +W E + +++K  DGSI ++  IP  +K+++ T +EI    L
Sbjct: 634 GEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKSL 693

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ A+ R  +IDQAQSLNL+ + P+  KL  +Y  AW  G+KTTYYLRSR AT + K+T+
Sbjct: 694 VDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATKIAKTTV 753

Query: 917 KGVDGKLN---------AVPVTDPNSS-THSLGIPSSCTSDTECEVCQ 954
           K      N         A P  +   S + +  I  S  +   CE CQ
Sbjct: 754 KASSNSANPTASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801


>gi|322500426|emb|CBZ35503.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 799

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/824 (34%), Positives = 437/824 (53%), Gaps = 49/824 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  + 
Sbjct: 7   MIIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVA 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++   + K P+Y ++  R     L ++   ++ +  +    H             ++  
Sbjct: 67  QTAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLETFRLLHDHVT-----------VQTN 115

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IE 315
             A L+ + + +        L + + Y RD  FE+ G + L   Y L I   R     +E
Sbjct: 116 RPAPLIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVE 175

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ  FMRVA+G+   + +  +   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  
Sbjct: 176 RPQQMFMRVALGIHGADLKNVR---ETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVA 232

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+T
Sbjct: 233 SKEDSIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNT 292

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV
Sbjct: 293 ARYVDQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRV 352

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                WTL  P+    L D YG+EFE  YE YE +         + I A  +W  +L   
Sbjct: 353 KSEGKWTLMDPNTCPGLSDCYGEEFERLYERYESEGRG-----VKTIQAQEVWFAILESQ 407

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
            ETG P++ +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L      
Sbjct: 408 IETGGPFVLYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDV 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ 
Sbjct: 468 EKREFNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D       
Sbjct: 528 LPFVSAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN--- 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV
Sbjct: 585 -----ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYV 639

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI
Sbjct: 640 RRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEI 699

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A  
Sbjct: 700 PQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAAD 759

Query: 911 VEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K T+      ++     +    S+H    P       EC  C
Sbjct: 760 AIKFTVDAKRMKEIQERENSQQTMSSHRASQP------EECLNC 797



 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +IKRNG    +D  KI R   +    ++       +  +++ + LT+Q 
Sbjct: 8  IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQI 56


>gi|146091813|ref|XP_001470128.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           infantum]
 gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania infantum JPCM5]
          Length = 799

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/824 (34%), Positives = 437/824 (53%), Gaps = 49/824 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  + 
Sbjct: 7   MIIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVA 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++   + K P+Y ++  R     L ++   ++ +  +    H             ++  
Sbjct: 67  QTAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLETFRLLHDHVT-----------VQTN 115

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IE 315
             A L+ + + +        L + + Y RD  FE+ G + L   Y L I   R     +E
Sbjct: 116 RPAPLIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVE 175

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ  FMRVA+G+   + +  +   E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  
Sbjct: 176 RPQQMFMRVALGIHGADLKNVR---ETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVA 232

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+T
Sbjct: 233 SKEDSIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNT 292

Query: 435 AVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV
Sbjct: 293 ARYVDQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRV 352

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                WTL  P+    L D YG+EFE  YE YE +         + I A  +W  +L   
Sbjct: 353 KSEGKWTLMDPNTCPGLSDCYGEEFERLYERYESEGRG-----VKTIQAQEVWFAILESQ 407

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
            ETG P+I +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L      
Sbjct: 408 IETGGPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDV 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ 
Sbjct: 468 EKREFNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMR 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D       
Sbjct: 528 LPFVSAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN--- 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV
Sbjct: 585 -----ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYV 639

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI
Sbjct: 640 RRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEI 699

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A  
Sbjct: 700 PQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAAD 759

Query: 911 VEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K T+      ++     +    S+H    P       EC  C
Sbjct: 760 AIKFTVDAKRMKEIQERENSQQTMSSHRASQP------EECLNC 797



 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +IKRNG    +D  KI R   +    ++       +  +++ + LT+Q 
Sbjct: 8  IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQI 56


>gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 748

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/779 (34%), Positives = 426/779 (54%), Gaps = 43/779 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++    G +       +   + +   GL + V    +  + + ++YDG+   +++T   
Sbjct: 1   MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++      +   +K                     
Sbjct: 61  EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKL-------------------- 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++   +++     + +D+K ERDF F Y GL+ L   Y   I+G  IE PQ  +MR
Sbjct: 101 HKAGIVTHEVLEVS-SKVKDDIKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYMYMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+   + +     +E Y  LS   F+ +TPTLFN+GT  PQ+SSCFL +   D + G
Sbjct: 160 VAIGIHGHDID---HVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLISNKEDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  ++E A ++K++GG+G     VR   +HI GTNG S G+IP L+V N TA  VNQ G
Sbjct: 217 IYDTVKECARISKWAGGIGLHIHDVRANKSHIRGTNGTSDGIIPMLRVYNTTARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL++R N GD+  R  D+ +A WIPDLFMKRV     W+LF
Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD    L D+YGKEFE  YE YE           + + A  +W+ ++    ETG P++ 
Sbjct: 337 CPDVARGLSDVYGKEFEELYEKYEADGI-----ATKVVPASEVWKAIIKSQSETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S  +H+G + SSNLCTEI   +  +ETAVCNL SI L  +      +F++++
Sbjct: 392 YKDACNEKSNHKHIGTIKSSNLCTEIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEE 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ VID N +  E  K+SN  HR IG+G+ G      +L + + S E+ 
Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   ++ +S ELA+  G Y SFKGS + +G+   D      +         
Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYESFKGSPFSKGILQFDMWDRDPK--------F 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ +++ VK  G  NS  +A  PTA+ + I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 SGRYDWNAMRELVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LVN+LK+R LW + M   +   +GS+ NI  IPDDLK+++ T +E+    +I+ A
Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           + R  +IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++ +   + +L+ 
Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEA 741


>gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 841

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/848 (38%), Positives = 484/848 (57%), Gaps = 59/848 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
           A S   +       +++   +G+    +  ++   V   C+GL  V +  V ++T   +Y
Sbjct: 29  AMSAVTASEQGPTMMRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLY 88

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG +  +L++  I ++  LI +EP YA+++AR L   +++EV                  
Sbjct: 89  DGATTRELDSLSIQTAAALIVEEPEYARLSARLLDTFIQKEVSNQEIHS----------- 137

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                F + +  G K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L
Sbjct: 138 -----FSQSVAAGHKHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLL 192

Query: 308 HINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
               +R  IE PQ FF+RVA  L    T+  K A+E Y L SS  ++ S+PTLFN+GTRH
Sbjct: 193 KNPQTREVIETPQDFFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRH 248

Query: 366 PQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            QLSSCFL   P D+L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G+
Sbjct: 249 EQLSSCFLLDSPSDELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGI 308

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P+LK  + +  AVNQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW
Sbjct: 309 VPWLKTLDASVAAVNQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANW 368

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + DLFM+RV  +  W+LF P  V  L DLYG+ FE AY      A   +    RK+ A  
Sbjct: 369 VSDLFMRRVEADQEWSLFDPKTVPHLTDLYGEAFERAY-----AAAEAQGLAARKVKARD 423

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNL 602
           L+ +M+  L +TG+ W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNL
Sbjct: 424 LYARMMKTLAQTGNGWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNL 483

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL    ++ +FD+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG
Sbjct: 484 GSLNLGRMLSDGKFDFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMG 543

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     L +P+ +PEA  ++ +  E I F A++ S +LA++ G + +F  +    G   
Sbjct: 544 LQDVFFQLRMPFDAPEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQ 603

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+ G++ E              W  L++R++  G+RNS  +AIAPTATIA+I G  + I
Sbjct: 604 FDAWGVVPE----------DTARWAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECI 653

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NL+ +  +SGDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK
Sbjct: 654 EPQVSNLFKRETLSGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELK 713

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            I+ TA+E+    LI+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY
Sbjct: 714 AIYRTAWEVPMRSLIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYY 773

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVP----------------VTDPNSSTHSLGIPSSCTS 946
           +RSR AT + K+T+    G+  +V                 VT     T +  +  S  +
Sbjct: 774 MRSRPATRITKTTVDTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLEN 833

Query: 947 DTECEVCQ 954
              CE CQ
Sbjct: 834 PEMCEACQ 841



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 6  DVNKGDEDAFPSLAYPFPEKIKG---VQVIKRNGGVTSFDPSKISRAIMK 52
          +         P          +G   ++V KRNG     D +KI RA+ +
Sbjct: 17 ETPMKSPATPPLAMSAVTASEQGPTMMRVRKRNGSSEPVDLNKIVRAVGR 66


>gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi]
          Length = 775

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/759 (36%), Positives = 414/759 (54%), Gaps = 29/759 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +    +Y G++  +L+     ++ T+     +YA + AR  +  L +E 
Sbjct: 1   MDFVDPVAITLKVINGLYSGVTTQELDNLAAETAATMTTDHADYAILAARLAVSNLHKET 60

Query: 233 LTTVYKKP-------QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
                 K        Q++    M  LY         +       H  ++  +   L + +
Sbjct: 61  KKQFSGKRMTPLVIRQESLEKVMHDLYMMENEFLKTKSPMISNTHYKLIMENADRLNSAI 120

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            Y+RDF + Y G + L   Y L I G  +E PQ   MRVA+G+  ++ +    A+E YNL
Sbjct: 121 IYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGIHGEDID---SAIETYNL 177

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDW 404
           LS  +F  ++PT+F + T+ PQLSSCFL T+  D + GI+  L++ A+++K +GG+G + 
Sbjct: 178 LSERYFTHASPTMFAAATQRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGGIGLNV 237

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
             +R  G +I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV EFL
Sbjct: 238 HCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHGDVFEFL 297

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DL+KNTG +  R  DM  A WIPDLFM+RV  N  W+L  P +   L + +G+EFE  Y 
Sbjct: 298 DLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDCPGLSETWGEEFEKLYT 357

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YER+         R++ A  LW  ++    ETG P++ +KD CN +S QQ++G +  SN
Sbjct: 358 GYEREGR-----FTRQVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIKCSN 412

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           LCTEI   SS +E AVCNL SI L      +  +D+ KL    +T  + L+ +IDIN + 
Sbjct: 413 LCTEIVEYSSKDEIAVCNLASIALNMFVKPDRTYDFAKLKEVAKTVTKNLNKIIDINYYP 472

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +AK+SN  HR IG+G+ G   A  L+  PY S EA  +  +  E I F A+ AS ELA
Sbjct: 473 VPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEASCELA 532

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            + G Y S+ GS   +G+   D                T    W ELK+ + T G+RNS 
Sbjct: 533 AQDGPYESYDGSPVSKGILQYDMWEKKP----------TELWDWAELKRNIVTHGVRNSL 582

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L + +LWD+ M +
Sbjct: 583 LLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELWDDEMKN 642

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            +   +GSI  IE IP  ++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+ 
Sbjct: 643 KILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIHVAEPNY 702

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            KL  I+   W MGLKT  YYLR++ A +  + T+    
Sbjct: 703 GKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSK 741


>gi|3914639|sp|O15909|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei]
          Length = 838

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/803 (35%), Positives = 426/803 (53%), Gaps = 29/803 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +   T       +  H  +      +     EE  
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHK-TTTESVLDSFRVLHEHVSQATKRHAPLISEELW 126

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                H          L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 127 DIANKHS-------AALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            F+RVA+G+  ++ E   R  E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLE---RVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER+         R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYEREGRG-----VRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G   A  LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---D 734
           EA ++  +  E I   A+ AS ELA++ G Y +FKGS   +G    D       +R   +
Sbjct: 532 EAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +   +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSSTH 936
            TL     K    P        H
Sbjct: 772 FTLDPKAMKELPKPDKQSKEEVH 794


>gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 748

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/779 (34%), Positives = 429/779 (55%), Gaps = 43/779 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++    G +       +   + +   GL + V    +  + + ++YDG+   +++T   
Sbjct: 1   MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++      +   +K                     
Sbjct: 61  EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKL-------------------- 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++   +++     + +D+K ERDF F Y GL+ L   Y   I+G  IE PQ  +MR
Sbjct: 101 HKAGIVTHEVLEVS-SKVKDDIKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYLYMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+   + +     +E Y  LS   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGHDID---HVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLIANKEDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  ++E A ++K++GG+G     VR   +HI GTNG S G+IP L+V N TA  VNQ G
Sbjct: 217 IYDTVKECARISKWAGGIGLHVHDVRANKSHIRGTNGTSDGIIPMLRVYNSTARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL++R N GD+  R  D+ +A WIPDLFMKRV  +  W+LF
Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D+YGKEFE  YE YE +         + + A  +W+ ++    ETG P++ 
Sbjct: 337 CPDQAKGLSDVYGKEFEDLYEKYESEGI-----ATKVVPASEIWKAIIKSQSETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S  +HVG + SSNLCTEI   +  EETAVCNL SI L  +     N+F++++
Sbjct: 392 YKDACNEKSNHKHVGTIKSSNLCTEILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEE 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ VID N +  E  K+SN  HR IG+G+ G      +L + + S E+ 
Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   ++ +S ELA+  G Y +FKGS + +G+   D      +         
Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYETFKGSPFSKGILQFDMWDRDPK--------F 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ ++K VK  G  NS  +A  PTA+ + I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 SGRYDWNAMRKLVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LVN+LK+R LW + M   +   +GS+ NI  IPDDLK+++ T +E+    +I+ A
Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           + R  +IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++ +   + +L+ 
Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEA 741


>gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 815

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/819 (47%), Positives = 524/819 (63%), Gaps = 23/819 (2%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSK----IVLSETYKNMYDGLSESDLETALIFSSRT 208
                 +  +  I++ A +G +    +     + SE  + +YDG S  ++  A+  +   
Sbjct: 3   QRTPTTTIDVRSILDRARTGYETAFPEDECETLASEIERTLYDGASTDEVYQAVTQAFSA 62

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            +E+EP + ++ A    +    EV+       +    +E+   Y   F   +E  V+   
Sbjct: 63  RVEREPAFKRIAAAAFRQGYYHEVIG------ENLRGYELDREYRATFIENLERAVEIGR 116

Query: 269 LHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVA 325
           L E     FDL  LA+ L+ +RD  FEY+ ++ L  RYFL    NG R+E+PQAF+MRVA
Sbjct: 117 LDERLPERFDLDDLASYLEPDRDERFEYMAMETLAQRYFLKTEENGERLELPQAFWMRVA 176

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGLA++E + ++RA EFY++LS   F  STPTLF+SG+ HPQLSSC+LTTV DDL  IF 
Sbjct: 177 MGLAVEEDDPQRRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVSDDLEHIFD 236

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +   +A L+K+SGGLGNDWT +R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+
Sbjct: 237 SYNHHAHLSKWSGGLGNDWTNLRASGALIESTGVESTGVVPFLRISNDVTAAINRSGKRR 296

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA CAYL  WH+D   F+DL++NTGD+RRRT DMNTA WIPDLFMKRV     WTLFSPD
Sbjct: 297 GAACAYLACWHLDFPAFIDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEAGEEWTLFSPD 356

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           EV DLHDL G+ F   Y  YE+QA+ GE + + ++ A  LWRK LT LFETGHPW+TFKD
Sbjct: 357 EVPDLHDLSGEAFAEKYREYEKQAEAGEFRQYERVDAEELWRKTLTRLFETGHPWLTFKD 416

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
           PCN+RSPQ H G VHSSNLCTEITLN+S +E AVCNLGS+N   H +  + ++D LA TI
Sbjct: 417 PCNVRSPQDHAGTVHSSNLCTEITLNTSEDEHAVCNLGSVNFATHVSGGELNHDHLAETI 476

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            TA+R+LDNV+D+  +  ++A+ SN  HR +GLG MGF  AL  L IP  S +A+E A+ 
Sbjct: 477 ETAMRMLDNVVDLCFYPTDEAEHSNMQHRPVGLGTMGFHDALMELGIPMDSEDAIEKANR 536

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744
             EF+S+HAI  S +LA ERG Y S++GS WD+G+ P D++  L   R  E+   R   L
Sbjct: 537 WQEFVSYHAIHNSSKLAAERGTYPSYEGSKWDRGMLPQDTVDTLEAERGREIPTEREETL 596

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  +++ V+  GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSG+FTVVN 
Sbjct: 597 DWYVVREHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPMYSNLYVKSNMSGEFTVVND 656

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            LV++LK  +LWDE M+  +KYHDG+I  I+ +PDDLK+++  AFEIDP   +   + RQ
Sbjct: 657 HLVDDLKALELWDEEMVDRIKYHDGTIQEIDAVPDDLKELYRGAFEIDPRHQLRLTAHRQ 716

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL-------- 916
            WIDQ+ S N++     G  LD +Y+ AW +GLKTTYYLR+  A+ +EKSTL        
Sbjct: 717 TWIDQSVSHNVFFPSTDGTLLDDVYKTAWRLGLKTTYYLRTLGASGIEKSTLDMAEYGKS 776

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           +  DG            +    G    CT  D  C+ CQ
Sbjct: 777 QHRDGFGTDPDDDGSGDADDGDGETDLCTVEDPTCDACQ 815


>gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           saanensis SP1PR4]
 gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           saanensis SP1PR4]
          Length = 815

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/843 (39%), Positives = 489/843 (58%), Gaps = 48/843 (5%)

Query: 124 ERSDVRAAQSHSKSDAPI---APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
             + ++ + S      P     P + +   +G L   +  ++   V+    GL  V +  
Sbjct: 7   NHNQIQTSLSDLTPSFPAREEMPTMGVRKRNGALEPVDVNKIVRAVQRNAHGLGQVDAIR 66

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           + S+T   +YDG +  +L++  I ++ +LI +EP Y+K+ AR LL  + +EV+       
Sbjct: 67  IASKTIGGLYDGATTRELDSISIDTAASLIAEEPQYSKLAARLLLGTIMKEVVGQNLHS- 125

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLG 297
                          F + I  G +  ++ ++  +F    +  L + +  E    FEY G
Sbjct: 126 ---------------FSQSISYGYQEGVVSKATAEFVQTHMRKLNHAINDELSDRFEYFG 170

Query: 298 LQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           L+ +YDRY L    +   IE PQ FF+RVA GLA    E    A+EFYNL++S  +M S+
Sbjct: 171 LRTVYDRYLLRDPISRKVIETPQHFFLRVACGLAGTPHE----AIEFYNLIASHDYMPSS 226

Query: 356 PTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFNSGT+H Q+SSC+L   P D L  I+   +  A+L+K+SGG+G  +  VR  G+ I
Sbjct: 227 PTLFNSGTKHAQMSSCYLHDSPLDSLDSIYDTYKNVALLSKFSGGIGLAFHRVRSEGSLI 286

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             TNG S G++P+L+  + +  AVNQGGKRKGA C YLE WH D+E FL+LR+NTGD  R
Sbjct: 287 RATNGLSNGIVPWLRTLDSSVAAVNQGGKRKGACCVYLEPWHADIESFLELRENTGDLSR 346

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           RT+++N ANWIPDLFM+RV ++  W+LF P EV    DLYGKEFE AY   E      + 
Sbjct: 347 RTYNLNLANWIPDLFMQRVDEDGIWSLFDPKEVPTFPDLYGKEFEEAYIQAE-----TDK 401

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNS 592
           K  R+I A  L+ +M+  L ETG+ W+TFKD CNI++ Q  +   VVH SNLCTEIT  +
Sbjct: 402 KYHRQIKARDLYMRMMRSLAETGNGWMTFKDACNIKNNQTGKPGNVVHLSNLCTEITEVT 461

Query: 593 SSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S +ETAVCNLGS+NL  H     +FD++KLA+T+R AV +LD VIDIN + + +A  +N 
Sbjct: 462 SKDETAVCNLGSVNLARHVTPEGKFDFEKLANTVRIAVPMLDRVIDINYYPVPQAASANA 521

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R +GLG+MG Q     + IP+ SPEA+ I+ +  E I ++A+ ASVELA+  G + SF
Sbjct: 522 RWRPVGLGVMGLQDVFFQMRIPFDSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSF 581

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             +   +G F  D   +     +           WD L++R+   G+RNS  +AIAPTAT
Sbjct: 582 DETRLAKGEFQFDLWNVKPADPER----------WDALRQRILKSGIRNSLLIAIAPTAT 631

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           IA+I G  + I+P   NL+ +  +SG+F  VN +L+ ELKQR +W E M   +K  +GS+
Sbjct: 632 IASIVGCYECIEPQISNLFKRETLSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSV 691

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             +E +P+DL+ ++ T +E+    LI+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  
Sbjct: 692 QAMEDLPEDLRAVYRTVWEVPMRSLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMH 751

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-THSLGIPSSCTSDTEC 950
           AW  GLKTTYYLRSR AT + K+T+        A+  T        +  I  S  +   C
Sbjct: 752 AWKSGLKTTYYLRSRPATKISKTTVSKAAAASAALADTASRPKVADAEAIACSLENPESC 811

Query: 951 EVC 953
           E C
Sbjct: 812 EAC 814



 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1  MHPSKDVNKGDEDAFPSLAYPFP--EKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          M  +   +   + +   L   FP  E++  + V KRNG +   D +KI RA+ +
Sbjct: 1  MAATTTNHNQIQTSLSDLTPSFPAREEMPTMGVRKRNGALEPVDVNKIVRAVQR 54


>gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 800

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/834 (38%), Positives = 481/834 (57%), Gaps = 59/834 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G+    +  ++   V   C+GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 2   MRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSIQ 61

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP YA+++AR L   +++EV                       F + +  G 
Sbjct: 62  TAAALIVEEPEYARLSARLLDTFIQKEVSNQEIHS----------------FSQSVAAGH 105

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L    +R  IE PQ 
Sbjct: 106 KHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQD 165

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L    T+  K A+E Y L SS  ++ S+PTLFN+GTRH QLSSCFL   P D
Sbjct: 166 FFLRVACAL----TDTAKDAIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPSD 221

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 222 ELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAAV 281

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV  +  
Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQE 341

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V  L DLYG+ FE AY      A   +    RK+ A  L+ +M+  L +TG+
Sbjct: 342 WSLFDPKTVPHLTDLYGEAFERAY-----AAAEAQGLAARKVKARDLYARMMKTLAQTGN 396

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNLGS+NL    ++ +F
Sbjct: 397 GWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGKF 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG Q     L +P+ +
Sbjct: 457 DFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDA 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA  ++ +  E I F A++ S +LA++ G + +F  +    G    D+ G++ E     
Sbjct: 517 PEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPE----- 571

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    W  L++R++  G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 572 -----DTARWAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLS 626

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK I+ TA+E+    L
Sbjct: 627 GDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSL 686

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY+RSR AT + K+T+
Sbjct: 687 IDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTTV 746

Query: 917 KGVDGKLNAVP----------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               G+  +V                 VT     T +  +  S  +   CE CQ
Sbjct: 747 DTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLENPEMCEACQ 800


>gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4]
 gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4]
          Length = 752

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/775 (35%), Positives = 436/775 (56%), Gaps = 40/775 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG     +  ++    E    GL+ V    V       +YDG+  ++++  L  
Sbjct: 1   MDVIKRDGRKEKASLDKVTRRAEMLADGLK-VEPIAVAQRVVSGLYDGIKATEIDVFLAE 59

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +L  + P+YAK+ AR ++  L++E         + +    +   Y  +  R      
Sbjct: 60  TAASLATEHPDYAKLAARVMVSSLQKETNGYAAATSELSEIGILSDAYVNFVAR------ 113

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                       + + L + + Y+RD+ F+Y G + L   Y L + G+ +E PQ  FMRV
Sbjct: 114 ------------NQLALEDMIDYKRDYQFDYFGYKTLERSYLLKVKGAVVERPQDMFMRV 161

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+ +A  + E+ +   E Y+LLS  ++  +TPTLFN+G +  QLSSCFL  +  D + GI
Sbjct: 162 AVVVAGDDLEEIR---ELYDLLSLGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSIDGI 218

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           +  L++ A+++K +GG+G     +R  GA I GTNG S G+IP LKV N+TA  V+QGG 
Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIIPMLKVFNETARYVDQGGG 278

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKG+   YLE WH D+E FLDLRKN G +  R  D+  A W+PDLFM+RV  +A WTLF
Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLF 338

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP    DL +LYG EF   Y+ YER          + I A  L  K++    ETG P++ 
Sbjct: 339 SPHNTKDLSELYGSEFNRKYQEYERIGLG-----VKTIKARQLMTKIIESQTETGTPYML 393

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S Q+++G + SSNLC EI   S+ +ETA CNL S+ L     +  FD++KL 
Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVTDTGFDFEKLH 453

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              + A++ LD VID+N H   K +KSNH HR +GLG+ G       +H+P+ S EA+ +
Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHL 513

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E +   ++ AS E+A+++G YSS+ GS   QG+F  D  G             +S
Sbjct: 514 NRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISQGLFQFDLWGKQP----------SS 563

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  W +LK ++   G+RNS  +A  PTA+ A I G +++ +    NLY +  +SG+F ++
Sbjct: 564 RWDWSQLKLKIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIIL 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L++  LW   +   +  ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ 
Sbjct: 624 NKHLVRDLEKNGLWTSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAE 683

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           R  ++ Q+QSLNL+L  P+  +++ ++  AW  GLKT  YYLRS+ + +  K T+
Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTV 738


>gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
 gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
          Length = 797

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/799 (49%), Positives = 523/799 (65%), Gaps = 12/799 (1%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
              +E I+E+A     + S   +     ++ Y+G S  ++  A+I +    I++ P Y  
Sbjct: 8   PDGIEAILEQAWDDRAEGSPDDIARAARRDCYEGASREEVYEAIIGALTARIDRVPEYRT 67

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V AR              +++       + +  Y + F   IE GV+A LL E M ++DL
Sbjct: 68  VAARVF--------RRRYFEERVGVAPDDHEAAYRDSFVASIERGVEADLLDERMGEYDL 119

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKE 336
             LA  L+  RD   +Y+ ++ L  RYFL      IE+PQ F+MRVAMG+AL+E   E+E
Sbjct: 120 SRLAEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPEERE 179

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           K A EFY+LLS+  F+ STPTLF++GT HPQLSSC+LTTVPDDL GIF A +E+A L+K+
Sbjct: 180 KYAKEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKLSKW 239

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           SGGLGNDWTP+R  GA I  T  +S G +PFLK+AND   A+N+ GKR+GA CAYLE WH
Sbjct: 240 SGGLGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLEAWH 299

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D   FLDLR+NTGD+RRRTHDMNTA W+PDLFMKRV  +  W LFSP+EV DLH  YG+
Sbjct: 300 MDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGTYGR 359

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YER+A+ GE+  + +  A  LWR+ LT LFETGHPWITFKDPCN+RSPQ H 
Sbjct: 360 EFEERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQDHA 419

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           GV++SSNLCTEITLN+S EETAVCNLGS+NL  H   +  D + LA T+ TA+R+LDNV+
Sbjct: 420 GVINSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLDNVV 479

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N +  EKA++SN  HR +GLG MGF  AL    IP  S +AVE AD + E +S+HAI 
Sbjct: 480 DLNFYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYHAIL 539

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKT 755
            S ELA ERGAY S++GS WD+ +FP D++ +L E R  E+ ++   RL W  +++ V  
Sbjct: 540 GSSELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERGREIPIDVEERLDWGRVREHVSE 599

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N  LV++L++R L
Sbjct: 600 HGMRNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLRERGL 659

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W + +   + YHDGSI  I+ IP+D+ ++H  AFEIDP   +  ++ R  WIDQ QS N+
Sbjct: 660 WTDEIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQSHNV 719

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +     G  L  +Y  AW +GLKTTYYLR+  A+ VEK+TL   +           +   
Sbjct: 720 FFPSTDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLDMREYDDTQF-RDSDDDDD 778

Query: 936 HSLGIPSSCTSDTECEVCQ 954
              G       D  CE CQ
Sbjct: 779 EDEGNGLPSVEDPTCEACQ 797


>gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
          Length = 749

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/778 (36%), Positives = 433/778 (55%), Gaps = 42/778 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL D   S  V  + + +MYD ++  +++T   
Sbjct: 1   MRVIKRSGRIEDMKFDNVTNRIKNLTYGLSDKCDSSKVAQQVFSSMYDNITTQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++                    + P  F   + + 
Sbjct: 61  EICVGMITSDPDYETLATRIVASNIQK--------------------VCPNNFHLAMRKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ + +++     +   +K +RDF F Y GL+ L   Y   ++G  IE PQ  FMR
Sbjct: 101 QKAGIITDEVVEV-AQQVKEHIKSDRDFDFGYFGLKTLEKSYLQRVDGKLIETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA+G+  K+      A++ YN +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGKDVP---SALDTYNKMSQGLFIHATPTLFNAGTPRPQMSSCFLIANKADSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     +R   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDIRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHSDIMDFLELRLNQGDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D+YG+EFE  Y  YE +           + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAKGLSDVYGQEFEDLYTKYEEEGLANA-----TVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S Q+++GV+ SSNLCTEI   +  +ET+VCNL SI L  +       FDYDK
Sbjct: 392 YKDACNSKSNQKNLGVIKSSNLCTEILEYTDKDETSVCNLASIALPKYVNKETKTFDYDK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +T  + L+ VID N + +E A++SN  HR IGLG+ G      L  +P+   E+ 
Sbjct: 452 LHEITKTVTKNLNRVIDRNFYPVETARRSNMKHRPIGLGVQGLADVFILCGLPFDCEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G+Y SFKGS   +GV   D      +         
Sbjct: 512 LMNAHIFETMYHAALEASSELAEVEGSYESFKGSPAAEGVLQPDMWDGETK--------F 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  WD +++RVKT G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 SGRYDWDAMRERVKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 623

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV++LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 624 VVNKHLVDDLKKVGLWSKEMKDLMVKAGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMA 683

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+
Sbjct: 684 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKAGLKTGMYYLRSKAKARPIQFSLE 741


>gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV]
          Length = 781

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/777 (33%), Positives = 425/777 (54%), Gaps = 32/777 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L +E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++ +    A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRDIDA---AIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L  +   EFE  YE YE+Q         +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLAIVTVFEFEALYEKYEKQGR-----YVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +P+ S  A E+
Sbjct: 468 EITKSCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ A+ ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+  
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNSIQFTVDK 755


>gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
 gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
          Length = 781

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/815 (39%), Positives = 469/815 (57%), Gaps = 39/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     +  ++   VE     L DV    V ++T   +YDG + ++L+   I 
Sbjct: 1   MRVRKRNGDTEPVDVNKIVRAVERWADDLTDVDPLRVATKTISGLYDGATTAELDRLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+K+ AR L   + +EV    + +   +    +   + E          
Sbjct: 61  TAAELIAEEPQYSKLAARLLAAYIEKEV----HNQGIASFSQSIALGHAEGLIG----DE 112

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322
            AR + ++   FD       +  + D  FEY GL+ +YDRY L    SR  IE PQ F +
Sbjct: 113 TARFVKDNARKFDF-----AIDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQYFLL 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA GLA    E    A+EFY L+S   ++ S+ TLFNSGTRHPQ+SSC+L   P D+L 
Sbjct: 168 RVACGLARTPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPRDELD 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+    + A L+K++GG+G  ++ VR  GA I GTNG S G++PFLK  + +  AVNQG
Sbjct: 224 SIYARYHQVARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAAVNQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKGA C YLE WH D+EEFL+LR NTG+D RRT+++N ANWIPD FM+RV  +  W+L
Sbjct: 284 GRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             PD+  +L DL+G +F+ AY   E +         R++ A  L+ KM+  L ETG+ W+
Sbjct: 344 IDPDQAPELVDLWGADFDAAYRRAEAEGR-----YVRQVRARDLYAKMMRTLAETGNGWM 398

Query: 562 TFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           TFKD CN +  Q  +   VVH SNLCTEI   +  +E AVCNLGSINL  H  +   D+D
Sbjct: 399 TFKDACNAKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGAVDWD 458

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L  T++ AV +LD V+DIN +   +A +SN   R IGLG+MG Q     L +P+ S EA
Sbjct: 459 RLRRTVQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFDSGEA 518

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +E++    E I   A+  S ELA E G + +F  +    G    D  G+           
Sbjct: 519 LELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTP--------- 569

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T +  +  +K+R+  +G+RNS  +AIAPTATIA+I G  +SI+P   NL+ +  +SG+F
Sbjct: 570 -TQQERYAAIKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETLSGEF 628

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN+ LVNELK R LW + +   +K  DGS+  +  +P++++++  TA+E+    LI+ 
Sbjct: 629 LQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKALIDL 688

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ R  +IDQ+QSLNL++  P+  KL  +YR AW  GLKTTYYLRSR AT ++++T+   
Sbjct: 689 AAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQATVTVT 748

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               + V     N ST       S  +   CEVCQ
Sbjct: 749 SS--DDVRDVMANPSTSKPATSCSLENPETCEVCQ 781



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 24/164 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KRNG     D +KI RA+ +   A +             I  L +   T  L    
Sbjct: 1   MRVRKRNGDTEPVDVNKIVRAVER--WADDLTDVDPLRVATKTISGLYDGATTAELDRLS 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT----REYVLYREERSD-----VRAAQSHSKSDA 139
                    IQ   E    +  + K+       Y+  +E  +       ++         
Sbjct: 59  ---------IQTAAELIAEEPQYSKLAARLLAAYIE-KEVHNQGIASFSQSIALGHAEGL 108

Query: 140 PIAPKLKIMMDDGTLISFNSK-RLEMIVEEACSGLQDVSSKIVL 182
                 + + D+     F    + +   E    GL+ V  + +L
Sbjct: 109 IGDETARFVKDNARKFDFAIDPKGDQRFE--YFGLRTVYDRYLL 150


>gi|297268644|ref|XP_002799731.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 695

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/714 (38%), Positives = 416/714 (58%), Gaps = 29/714 (4%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDR 304
           M+ LY          G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   
Sbjct: 1   MEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 57

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT 
Sbjct: 58  YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 114

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G
Sbjct: 115 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNG 174

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A
Sbjct: 175 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 234

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q       V + + A
Sbjct: 235 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKA 289

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL
Sbjct: 290 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 349

Query: 603 GSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ 
Sbjct: 350 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 409

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+ 
Sbjct: 410 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 469

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +            T    W+ LK+ +   G+RNS  +A  PTA+ A I G ++S
Sbjct: 470 QYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNES 519

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDL
Sbjct: 520 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 579

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  
Sbjct: 580 KQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 639

Query: 901 YYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YYLR+R A +  + TL K        +   +     ++  +  S  +  EC +C
Sbjct: 640 YYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
 gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
          Length = 840

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/875 (31%), Positives = 431/875 (49%), Gaps = 100/875 (11%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL-----QDV-----------SSKIVLSET 185
              L ++  DG        ++   +++   GL       V           S  IV  + 
Sbjct: 1   MGGLYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVRTDHGRLHLPHSQVIVAQKV 60

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
              ++ G++  +L+     ++ ++  K P+YA + AR  +  L +  +        K+  
Sbjct: 61  CMGVFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHKTTV--------KSFS 112

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILY 302
             M+ +Y     R    G  + LL + + +    +   L  +L Y+RDF ++Y G + L 
Sbjct: 113 ETMKVMYEHVNKRN---GKWSPLLADDVYEIIMANAEKLDAELVYDRDFDYDYFGFKTLE 169

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L I+G  +E PQ   MRV++G+   + EK   A++ Y++LS      ++PTLFN+G
Sbjct: 170 RSYLLRIDGKVVERPQHLLMRVSIGIHKTDIEK---AIDTYHMLSERWMTHASPTLFNAG 226

Query: 363 TRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL  +  D + GI+  L+E A ++K +GG+   +             + + 
Sbjct: 227 TPRPQLSSCFLICMKEDSIEGIYDTLKECACISKSAGGIALTF----EAPTERRTASFRC 282

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
             V    ++A  T V V+    R      YLE WH D+ ++LDLRKN G +  R  D+  
Sbjct: 283 C-VCSTTRLATWTKVVVSARNVR-----IYLEPWHADIFDWLDLRKNHGKEEARARDLFY 336

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
             W  DLFMKRV  N  WTL  P+E   L D +G+EFE  YE YE +         + I 
Sbjct: 337 GLWTNDLFMKRVEANGEWTLMCPNECPGLSDCWGEEFETLYEKYEAEGKGK-----KTIK 391

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW  +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCN
Sbjct: 392 AQQLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEYTSPDETAVCN 451

Query: 602 LGSINLLAHFANNQ-----------------------FDYDKLASTIRTAVRVLDNVIDI 638
           L SI L      N                        FD+ KL    R   R L+ +ID+
Sbjct: 452 LASIALPRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKVTRNLNRIIDV 511

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + +E AK SN  HR IGLG+ G      LL +P+ SPEA ++  E  E I F A++ S
Sbjct: 512 NYYPVEAAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEAQKLNAEIFETIYFAALTES 571

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA   G YS+++GS   +GV   D  GL         M   +R  W  L+  +   G+
Sbjct: 572 NALAVAEGPYSTYEGSPVSKGVLQPDMWGLT-------EMPGGNRHDWAGLRASIAQHGV 624

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD 
Sbjct: 625 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDP 684

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + ++L  ++GS+ +++ IPD+LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ 
Sbjct: 685 ELKNELISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMS 743

Query: 879 EPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-----GKLNAVPVT--- 929
           +P+  KL  ++  AW  GLKT  YYLRSR+A    K T+          K N  P +   
Sbjct: 744 DPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDATKTKSKVNKENEAPASPRK 803

Query: 930 -----------DPNSSTHSLGIPSSCTSDTECEVC 953
                      +   +  +  +  S  +  +C +C
Sbjct: 804 PTKADLEKMTDEEKEAYLAAKLQCSLQNRDDCVMC 838


>gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit
           [Saccharomyces cerevisiae]
          Length = 756

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/786 (32%), Positives = 404/786 (51%), Gaps = 44/786 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++     +E
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPMISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                +        +  YL + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 120 IYNIVM--------ETRYLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 172 RVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFNAGTPLPQMSSCFLIAMKDDSIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +G L      +R  G++I GTNG S G+IP ++V N+TA  V + 
Sbjct: 229 GIYDTLKECAMISKTAGVLS-HINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVTRV 287

Query: 442 GKRKGAVCAYLETWH---IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
             R   +  +    H   I   +F D+RK  G +  R  D+  A WIPDLFMKRV ++  
Sbjct: 288 VTRDLVLSPF-SWSHGMQISSTKF-DIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGP 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG 
Sbjct: 346 WTLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGT 399

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------A 612
           P++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A         
Sbjct: 400 PFMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGK 459

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +
Sbjct: 460 TASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRL 519

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D        
Sbjct: 520 PFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP-- 577

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +
Sbjct: 578 --------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSR 629

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI 
Sbjct: 630 RVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEIS 689

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++ 
Sbjct: 690 QKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAA 749

Query: 912 EKSTLK 917
            + T+ 
Sbjct: 750 IQFTID 755


>gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
 gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
          Length = 757

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/778 (33%), Positives = 429/778 (55%), Gaps = 32/778 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     + +++   ++  C  L    + +  + +E  K +Y+ +   D++T  
Sbjct: 1   MYVIKRSGKKELLSIEKITKRIDNLCYDLDKNFIDANYLANEIIKGLYNNIRTKDIDTFA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                  I +  +Y  + +R ++ KL +E          ++    +  LY          
Sbjct: 61  SELIAGFITRHYDYDTLASRIVVSKLHKET--------TESFSDVIHTLYNYINPNNGNH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      ++     + N + Y+RD+++ Y G++ L   Y L  N   IE PQ   M
Sbjct: 113 LPMVSEYLYQQVNKHRDIIDNVIAYDRDYSYSYFGIKTLEKSYLLKQNNKIIERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+   + +     +E YN LS   F+ ++PTLFN+GT  PQ+SSCF+  +  D + 
Sbjct: 173 RVSLGIHGGDIDD---VIETYNYLSEKWFIHASPTLFNAGTPLPQMSSCFILPIKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A+++K++GG+G   + +R  G +I G NGKS G++P L++ N+T   +NQG
Sbjct: 230 GIFDTLKQCALISKHAGGIGLSISNIRAKGTYISGINGKSNGIVPMLRIYNNTVRYINQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA+  Y+E WH D+ +FL LRKN G++  RT D+ TA W+PDLFM+RV ++  W+
Sbjct: 290 GDKRPGAMSIYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D++G +F   Y  YE +     I         +LW+ ++    E G P+
Sbjct: 350 LMCPCECPGLCDVWGNDFNKLYIEYETKKKIKAIVKA-----RSLWKSIIEAQIEQGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S Q ++G + SSNLCTEI   S+ +E AVCNLGSI+L     NN F +DK
Sbjct: 405 ILYKDSCNKKSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVNNNVFMFDK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +  V+ L+ +IDIN + + ++ +SN  HR IG+G+ G      LL   + S EA 
Sbjct: 465 LRIITKILVKNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I + A+ +S ELA+  G Y ++  S   +G+   D              N 
Sbjct: 525 ILNIQIFETIYYAALESSCELAKIYGPYETYNDSPASKGILQYDMW----------LKNP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W+ELKKR+ T G+RNS  +A  PTA+ + I   ++SI+P   N+Y +  +SGDF 
Sbjct: 575 TDLWDWNELKKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ EL  R++W+  + + +  H+GSI +++ +PD++K+I+ T +EI    ++E A
Sbjct: 635 VVNPHLLRELISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R  +IDQ+QS+ +Y+D P+  KL  ++   W +GLKT  YY+R++SA++  K T++
Sbjct: 694 ADRGAFIDQSQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751


>gi|131840167|ref|YP_001096176.1| ORF141 [Cyprinid herpesvirus 3]
 gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706742|gb|ABG42968.1| ORF141 [Cyprinid herpesvirus 3]
 gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3]
          Length = 806

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/830 (32%), Positives = 432/830 (52%), Gaps = 43/830 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +   DGT    +  ++   + E     + V  +++  +    + +G   S+++ 
Sbjct: 1   MEDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDE 60

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            L  ++  +    P+Y+K+ AR  +  L +       +  ++            +F    
Sbjct: 61  LLAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNP 109

Query: 261 EEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           + G++A L+ +   +        L   +++  DF + Y G + L   Y L      IE P
Sbjct: 110 DTGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MR A+ +     +     ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  + 
Sbjct: 170 QHTLMRCALQIHGDNIDAL---LQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMK 226

Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI   ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N    
Sbjct: 227 SDSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALER 286

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV  
Sbjct: 287 MVDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKD 346

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W+L  P     L +++G EFE  Y  YE +         R + A  LW  +L    E
Sbjct: 347 GGEWSLMCPASCPGLDEVWGPEFEALYTRYEAEGKAR-----RTVKARDLWNSVLVAQLE 401

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG P++ +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L        
Sbjct: 402 TGGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITI 461

Query: 615 -----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                ++D+  LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      +
Sbjct: 462 AEDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMM 521

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + IP+   +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL 
Sbjct: 522 MGIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLK 581

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E       + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NL
Sbjct: 582 RE-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNL 634

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+
Sbjct: 635 YQRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAY 694

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPS----GKKLDFIYRQAWLMGLKT-TYYLR 904
           EI    LI  A+ R  ++DQ+QSLNL+L E       KKL  ++  AW  GLKT  YYLR
Sbjct: 695 EISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLR 754

Query: 905 SRSATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +++A + V+ S    V  + +     +  S+           ++  C +C
Sbjct: 755 TKAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804


>gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3]
          Length = 806

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/830 (32%), Positives = 432/830 (52%), Gaps = 43/830 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +   DGT    +  ++   + E     + V  +++  +    + +G   S+++ 
Sbjct: 1   MEDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDE 60

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            L  ++  +    P+Y+K+ AR  +  L +       +  ++            +F    
Sbjct: 61  LLAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNP 109

Query: 261 EEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           + G++A L+ +   +        L   +++  DF + Y G + L   Y L      IE P
Sbjct: 110 DTGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MR A+ +     +     ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  + 
Sbjct: 170 QHTLMRCALQIHGDNXDAL---LQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMK 226

Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI   ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N    
Sbjct: 227 SDSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALER 286

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV  
Sbjct: 287 MVDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKD 346

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W+L  P     L +++G EFE  Y  YE +         R + A  LW  +L    E
Sbjct: 347 GGEWSLMCPASCPGLDEVWGPEFEALYTRYEAEGKAR-----RTVKARDLWNSVLVAQLE 401

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG P++ +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L        
Sbjct: 402 TGGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITI 461

Query: 615 -----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                ++D+  LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      +
Sbjct: 462 AEDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMM 521

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + IP+   +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL 
Sbjct: 522 MGIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLK 581

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E       + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NL
Sbjct: 582 RE-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNL 634

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+
Sbjct: 635 YQRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAY 694

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPS----GKKLDFIYRQAWLMGLKT-TYYLR 904
           EI    LI  A+ R  ++DQ+QSLNL+L E       KKL  ++  AW  GLKT  YYLR
Sbjct: 695 EISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLR 754

Query: 905 SRSATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +++A + V+ S    V  + +     +  S+           ++  C +C
Sbjct: 755 TKAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804


>gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens]
          Length = 695

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/714 (37%), Positives = 414/714 (57%), Gaps = 29/714 (4%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDR 304
           M+ LY          G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   
Sbjct: 1   MEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 57

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT 
Sbjct: 58  YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 114

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG   G
Sbjct: 115 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNPNG 174

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A
Sbjct: 175 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 234

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A
Sbjct: 235 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKA 289

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL
Sbjct: 290 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 349

Query: 603 GSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ 
Sbjct: 350 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 409

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+ 
Sbjct: 410 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 469

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++S
Sbjct: 470 QYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNES 519

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDL
Sbjct: 520 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 579

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  
Sbjct: 580 KQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 639

Query: 901 YYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YYLR+R A +  + TL K        V   +     ++  +  S  +  EC +C
Sbjct: 640 YYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Nomascus leucogenys]
          Length = 695

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/714 (38%), Positives = 414/714 (57%), Gaps = 29/714 (4%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDR 304
           M+ LY          G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   
Sbjct: 1   MEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 57

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT 
Sbjct: 58  YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 114

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G
Sbjct: 115 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNG 174

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A
Sbjct: 175 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 234

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A
Sbjct: 235 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKA 289

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL
Sbjct: 290 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 349

Query: 603 GSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ 
Sbjct: 350 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 409

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+ 
Sbjct: 410 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 469

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++S
Sbjct: 470 QYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNES 519

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDL
Sbjct: 520 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 579

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  
Sbjct: 580 KQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 639

Query: 901 YYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YYLR+R A +  + TL K        V   +     ++  +  S  +  EC +C
Sbjct: 640 YYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Pan troglodytes]
          Length = 695

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/714 (38%), Positives = 415/714 (58%), Gaps = 29/714 (4%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDR 304
           M+ LY          G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   
Sbjct: 1   MEDLYNYINPHN---GKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 57

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT 
Sbjct: 58  YLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPTLFNAGTN 114

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G
Sbjct: 115 RPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNG 174

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A
Sbjct: 175 LVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFA 234

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A
Sbjct: 235 LWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKA 289

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL
Sbjct: 290 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNL 349

Query: 603 GSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ 
Sbjct: 350 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQ 409

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+ 
Sbjct: 410 GLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGIL 469

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++S
Sbjct: 470 QYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNES 519

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDL
Sbjct: 520 IEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDL 579

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  
Sbjct: 580 KQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGM 639

Query: 901 YYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YYLR+R A +  + TL K        V   +     ++  +  S  +  EC +C
Sbjct: 640 YYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 797

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/821 (39%), Positives = 462/821 (56%), Gaps = 61/821 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G L   N  ++   V+    GL  V    V  +T   +YDG + ++L+   I 
Sbjct: 27  MQVRKRSGALEDVNVNKIVRAVQRCSGGLPGVDPMRVAVKTIGGLYDGATTAELDRLSIQ 86

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+++ AR L   + +EV                       F + I  G 
Sbjct: 87  TAAGLISEEPEYSRLAARLLATYVDKEVANQDVHS----------------FSQSIAAGY 130

Query: 265 KARLLHESMMDF------DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316
           +  L+    M F       L   A +   +    FEY GL+ +YDRY L    +R  IE 
Sbjct: 131 RHGLVAGGTMAFVAANARKLNAAAAEPAPD---LFEYFGLRTVYDRYLLRHPDTRHVIET 187

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           P  FF+RVA GLA    +    A+E Y L+S+  ++ STPTLFNSGT  PQ+SSC+L   
Sbjct: 188 PAFFFLRVACGLAESAAD----AIELYRLMSAHRYLPSTPTLFNSGTARPQMSSCYLLDS 243

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           P D L  I+    + A L+K++GG+G  +  +R  G+ I GTNG S G++P+LK  + + 
Sbjct: 244 PADALEAIYDRYADVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLKTLDSSV 303

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AVNQGGKRKGA C YLETWH DVEEFL+LR NTGD  RRT+++N ANW+PDLFM+RV  
Sbjct: 304 AAVNQGGKRKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEA 363

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W+LF P  V  L DL+G  F+ AY + E +         + + A  L+ +M+  L E
Sbjct: 364 GEPWSLFDPKAVPHLTDLFGAAFDAAYTDAEAKGL-----AVKSVPARDLYARMMKTLAE 418

Query: 556 TGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           TG+ W+TFKD CN    Q  +   VVHSSNLCTEI   +S+ ETAVCNLGS+NL  H   
Sbjct: 419 TGNGWMTFKDACNRACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNLARHVTR 478

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           + FD+  LA T+RTAVR LD V+D+N +   +A  SN   R +GLG+MG Q     L +P
Sbjct: 479 DGFDFAALAETVRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVFFKLKLP 538

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + +P A E++    E I +HA++ S ELA  RG + SF  +    GV   D  G      
Sbjct: 539 FDAPAARELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWG------ 592

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +  T    W  L++RV+T G+RNS  +AIAPTATIA+I G  + ++P   NL+ + 
Sbjct: 593 ----VEPTDPARWAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLFKRE 648

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F  VN +LV++LK   LW +A+ + +K  DGS+ ++  +P  L+ ++ TA+E+  
Sbjct: 649 TLSGEFLQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWEVPQ 708

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             LI+ A+ R  +IDQ+QSLNL+L+ P+  K+  +Y  AW  GLKTTYYLRSR AT++ K
Sbjct: 709 RGLIDMAAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRPATAIAK 768

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +T+            T   +   +  +  S  +   CE CQ
Sbjct: 769 TTV------------TPTAAPADTSAVSCSLENPGACEACQ 797



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
             P+     P+    +QV KR+G +   + +KI RA+ +
Sbjct: 11 TPPPAGRPRLPDSPSLMQVRKRSGALEDVNVNKIVRAVQR 50


>gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora
           maris AB-18-032]
 gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora
           maris AB-18-032]
          Length = 791

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/828 (37%), Positives = 460/828 (55%), Gaps = 47/828 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                       +++   +G     +  ++   VE   + L ++    V ++T   +YDG
Sbjct: 5   RAQAGPEQRRHVMQVRKRNGDTEPVDVNKIVKAVERWVTDLDEIDPLRVATKTISGLYDG 64

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ-CL 251
            + ++L+   I ++  LI +EP Y+++ AR L   + +EV         ++  +     L
Sbjct: 65  ATTAELDKLSIQTAAELIGEEPQYSRLAARLLAAFVDKEVRGQQVASFSQSIRYAHGLGL 124

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
             +    ++                +   L + +    D  FEY GL+ + DRY L    
Sbjct: 125 IGDATAAFVAR--------------NARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQ 170

Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +R  +E PQ + +RVA GL+    E    A+ FY L+SS  ++ S+PTLFNSGTRH Q+S
Sbjct: 171 TRQVVETPQYWLLRVACGLSQTPGE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMS 226

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL   P D+L  I+    + A L+K+SGG+G  WT VRG GA I GTNG+S G++PFL
Sbjct: 227 SCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFL 286

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWIPD 
Sbjct: 287 KTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDE 346

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+L  P +  +L DLYG+ F+ AY   E++A        R + A  L+ +
Sbjct: 347 FMRRVEADGDWSLIDPSDAPELPDLYGEAFDEAYRAAEKKA-------VRTVKARDLYGR 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           M+  L +TG+ W+TFKD  N  S Q       +H SNLCTEI   ++  ETAVCNLGSIN
Sbjct: 400 MMRTLAQTGNGWMTFKDAANRLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSIN 459

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L AH   +  D++KL +T+RTAV  LD VIDIN +  ++A  SN   R +GLGLMG Q A
Sbjct: 460 LAAHLTADGIDWEKLRATVRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDA 519

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
              L +P+ S  A E++    E I   A+  S +LAQ+ G + ++  +   +G    D  
Sbjct: 520 FFTLRMPFDSTPARELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLW 579

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G           + T    W  L++ +   G+RNS  +AIAPTATIA+I G  + I+P  
Sbjct: 580 G----------ADLTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQV 629

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL+ +  MSG+F  +N++LV ELK R LW  ++   +K  +GS+  I  +P+D++++  
Sbjct: 630 SNLFKRETMSGEFLQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFR 689

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TA+E+    LI+ A+ R  +IDQ+QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR
Sbjct: 690 TAWELPQRALIDLAAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSR 749

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            AT ++++T+         V V D         +  S  +   CE CQ
Sbjct: 750 PATRIQQATVAVTPAAPAIVAVGDDE------ALACSLENPESCEACQ 791



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 19 AYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMK 52
          A   PE+ +  +QV KRNG     D +KI +A+ +
Sbjct: 6  AQAGPEQRRHVMQVRKRNGDTEPVDVNKIVKAVER 40


>gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg.
 gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg
          Length = 676

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/698 (38%), Positives = 409/698 (58%), Gaps = 36/698 (5%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
           A + AR  +  L +E         +K     M+ LY          G  + ++ +S +D 
Sbjct: 2   AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN---GKHSPMVAKSTLDI 50

Query: 277 DL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            L     L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+  ++ 
Sbjct: 51  VLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDI 110

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAM 392
           +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D + GI+  L++ A+
Sbjct: 111 DA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 167

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAY 451
           ++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   Y
Sbjct: 168 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 227

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L 
Sbjct: 228 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 287

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +++G+EFE  Y +YE+Q       V + + A  LW  ++    ETG P++ +KD CN +S
Sbjct: 288 EVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKS 342

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVR 630
            QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR
Sbjct: 343 NQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVR 402

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I
Sbjct: 403 NLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            + A+ AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK
Sbjct: 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLK 512

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L
Sbjct: 513 EKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDL 572

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+
Sbjct: 573 TERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQS 632

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R+
Sbjct: 633 QSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRA 670


>gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium
           sp. NRC-1]
 gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 804

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/788 (48%), Positives = 518/788 (65%), Gaps = 15/788 (1%)

Query: 174 QDVSSKI---VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
            D+ S     +L+E  +N YD  +  +   AL+ +    I++ P Y  V  R L      
Sbjct: 25  DDIDSDARDRILTEATRNAYDDATTDERYDALLGALTGRIDRHPAYKTVAGRVL------ 78

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                  +               + F   I+ G+ A LL E M D+DL  LA+ +   RD
Sbjct: 79  -RERLERRLVDDYDPATRDAATRQAFRDGIQRGLDADLLDERMGDYDLNRLADAITPARD 137

Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLS 347
              +Y+ +  L  RYFL   +    E+PQ F+MRVAMG+AL+E   ++E+ A+EFY+ LS
Sbjct: 138 DRLDYMAMDTLRQRYFLREPDADPFELPQPFWMRVAMGVALREDPADREEYAIEFYDALS 197

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
           +  F+ STPTLF++GT H QLSSC+LTTVPDDL GIF A +E+A L+K+SGGLGNDWTP+
Sbjct: 198 TLRFVHSTPTLFHAGTTHAQLSSCYLTTVPDDLDGIFDAYKEHAKLSKWSGGLGNDWTPL 257

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G+ I  T  +S G +PFLK++ND   A+N+ GKR+GA  AYL  WH+D   F DLR+
Sbjct: 258 RAAGSLIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYLACWHLDFPAFCDLRR 317

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTGD+RRRTHDMNTA WIPDLFM+RV  +  WTLFSP E  DL++LYG +F   Y  YE 
Sbjct: 318 NTGDERRRTHDMNTAAWIPDLFMERVRADKQWTLFSPKETGDLYELYGSDFAERYREYEA 377

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            AD G+I+ F ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ H G V SSNLCTE
Sbjct: 378 MADDGDIQRFERVDATDLWRTMLTRLFETGHPWLTFKDPCNVRSPQDHAGTVRSSNLCTE 437

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           ITLN+S EETAVCNLGS+NL  H  +   D ++L+ T+ TA+R+LDNV+D+N +  E A+
Sbjct: 438 ITLNTSEEETAVCNLGSVNLARHLDDGDIDREQLSETVETAMRMLDNVVDLNFYPTENAE 497

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +SN  HR +GLG+MGF  AL  + +P AS +A++ AD   E++++HAI AS +LA ERG 
Sbjct: 498 RSNMRHRPVGLGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGASADLAAERGT 557

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           Y S++GS WD+ VFP D++  L   R  E+ + R  RL W ++++RV T GMRNSN MA+
Sbjct: 558 YESYEGSKWDRDVFPQDTVDRLESERGREIPVPREERLDWSDVRQRVATHGMRNSNTMAV 617

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATI+ I G + SI+P Y NLYVKSNMSGDFTVVN  LV +L++RDLW E +   L Y
Sbjct: 618 APTATISTIAGTTPSIEPVYSNLYVKSNMSGDFTVVNDRLVADLEERDLWTEELRDKLTY 677

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           HDGS+  ++ +P+D+++++ TAFEIDP   +  A+RR  WIDQ+QS+N++  E  G KL 
Sbjct: 678 HDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLAARRGVWIDQSQSVNVFFPETDGSKLS 737

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            +Y+ AW +GLKTTYYLR+  A+ +EK+TL  +D   +     D +              
Sbjct: 738 EVYQTAWELGLKTTYYLRTLGASQIEKTTL-DMDEYDDTQFRGDDDGEDADGDGDLPSVE 796

Query: 947 DTECEVCQ 954
           D  CEVCQ
Sbjct: 797 DPTCEVCQ 804


>gi|1710392|sp|P50647|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 804

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/830 (33%), Positives = 425/830 (51%), Gaps = 49/830 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     +  ++   ++    GL  +      V       MY  +   +L+   
Sbjct: 1   MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+++ + AR   + L +     V +  +    ++     P      I +
Sbjct: 61  AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDGRGRP---ASLISK 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   +L         V L  ++ Y   F ++Y G + L   Y L IN   IE PQ   M
Sbjct: 118 EVYDFILLHK------VRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + 
Sbjct: 172 RVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 229 GIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N  WT
Sbjct: 289 GGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG P 
Sbjct: 349 LMCPNECPGLSETWGEEFEKLYTKYEEENMGK-----KTVLAQDLWFAILQSQIETGVPI 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
             +KD CN + P +++G +  SNLC EI   +S +E AVCNL SI L         +F++
Sbjct: 404 YLYKDSCNAK-PIKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNF 462

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL   Y S  
Sbjct: 463 KKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDA 522

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+     E + + A+  SV+  Q  G Y S++GS   QG+   D      + +     
Sbjct: 523 AKELNKRIYETMYYAALEMSVDWLQ-SGPYESYQGSPGSQGILQFDMWNAKVDNKY---- 577

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WDELK ++   G+RN   +A  PTA+ + I G ++S +P   N+Y +  +SG+
Sbjct: 578 -----WDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 632

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    +I+
Sbjct: 633 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 692

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL- 916
            A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K T+ 
Sbjct: 693 MAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 752

Query: 917 ----------KGVDGKLNAVPVTDPNSSTHSLGIPSS---CTSDTECEVC 953
                     K  DG      V+      +            +D +C +C
Sbjct: 753 THVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802


>gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
 gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
          Length = 798

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/818 (38%), Positives = 458/818 (55%), Gaps = 43/818 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
            P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L+  
Sbjct: 19  RPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRL 78

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I ++  LI +EP Y+K+ AR L   + +EV                   Y        +
Sbjct: 79  SIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQG------VASFSQSIAYAHGLGLIGD 132

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           E       H          L + +  + D  FEY GL+ + DRY L    SR  +E PQ 
Sbjct: 133 ETAAFVARHAR-------KLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQY 185

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           + +RVA GL+    E    AV FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D
Sbjct: 186 WLLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRD 241

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +    AV
Sbjct: 242 ELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAV 301

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANW+PD FM+RV  +  
Sbjct: 302 NQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGE 361

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  L +TG+
Sbjct: 362 WSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGN 414

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N  S Q  +   V+H SNLCTEI   +   ETAVCNLGS+NL AH   +  
Sbjct: 415 GWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGV 474

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P+ S
Sbjct: 475 DWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDS 534

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G         
Sbjct: 535 AQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQAGR- 593

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  MS
Sbjct: 594 ---------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMS 644

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E+    L
Sbjct: 645 GEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRAL 704

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  ++DQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+
Sbjct: 705 IDLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATV 764

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             V   ++ V     ++ +    +  S  +   CE CQ
Sbjct: 765 APVLAPVSGV----VSAVSDDEALACSLENPESCEACQ 798



 Score = 45.5 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          +++ PS       +   ++V KR+G     D  KI RA+ +
Sbjct: 5  QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45


>gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           aurantiaca ATCC 27029]
          Length = 798

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/818 (38%), Positives = 459/818 (56%), Gaps = 43/818 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
            P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L+  
Sbjct: 19  RPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAELDRL 78

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I ++  LI +EP Y+K+ AR L   + +EV                   Y        +
Sbjct: 79  SIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQG------VASFSQSIAYAHGLGLIGD 132

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQA 319
           E   A  +           L + +  + D  FEY GL+ + DRY L    SR  +E PQ 
Sbjct: 133 ET--AGFVARHARK-----LDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVETPQY 185

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           + +RVA GL+    E    AV FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   P D
Sbjct: 186 WLLRVACGLSRTPGE----AVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDSPRD 241

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +    AV
Sbjct: 242 ELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGVAAV 301

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV  +  
Sbjct: 302 NQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGE 361

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  L +TG+
Sbjct: 362 WSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQTGN 414

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N  S Q  +   V+H SNLCTEI   +   ETAVCNLGS+NL AH   +  
Sbjct: 415 GWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTADGV 474

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P+ S
Sbjct: 475 DWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDS 534

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G         
Sbjct: 535 AQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQAGR- 593

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  MS
Sbjct: 594 ---------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMS 644

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E+    L
Sbjct: 645 GEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRAL 704

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           I+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+
Sbjct: 705 IDLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATV 764

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             V   ++ V     ++ +    +  S  +   CE CQ
Sbjct: 765 APVLAPVSGV----VSAVSDDEALACSLENPESCEACQ 798



 Score = 45.5 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          +++ PS       +   ++V KR+G     D  KI RA+ +
Sbjct: 5  QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45


>gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
 gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
          Length = 811

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/840 (31%), Positives = 431/840 (51%), Gaps = 62/840 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG L   +  ++   ++   + L    +S   + +      Y  L   +++T  
Sbjct: 1   MYVTKKDGRLELLDKNKILQRLQSLSTNLSTPYLSLPTLATSILHGTYPNLPTREIDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  + P+Y ++ AR       +      + K     + E            ++ 
Sbjct: 61  SETAASMSTQHPDYGRLAARICASANHKST-PDSFSKAMLLLNEEGGGFVNNEIADLVKR 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             K               + + +K+ERDF   Y G + L   Y L +N  + +E  Q  +
Sbjct: 120 RGK--------------EIDDRIKHERDFEMTYFGYKTLERSYLLKLNEDTIVERIQYLW 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+        + A E Y+L+S  +F  ++PTLF++GT HPQLSSCFL  +  D +
Sbjct: 166 MRVALGIHCYA--NLQAAFETYDLMSRGYFTHASPTLFHAGTTHPQLSSCFLVQMSDDSI 223

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G     +R  G  I GT G S G++P L+V + T+  V+Q
Sbjct: 224 NGIYDTLKRCAVISKAAGGIGLCVHKIRARGTFIKGTRGVSNGLVPMLRVFDVTSHYVDQ 283

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH D+ + L+L+KN G + +R  ++    W+PDLFMKRV ++  W
Sbjct: 284 GGGKRPGAFAIYLEPWHADIFDVLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVW 343

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P     L + +G++FE  Y  YE           R++ A  LW  +L    ETG P
Sbjct: 344 SLMCPHRCPGLSECHGEKFEELYAKYESDGR-----YTRQVRARELWAAILEAQIETGTP 398

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---- 615
           ++ +KD  N +S QQ++G +  SNLCTEI   ++ EE AVCNL SI L     +++    
Sbjct: 399 YLLYKDAANKKSNQQNLGTIQCSNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFG 458

Query: 616 --------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD+++L    +   + LD VID+N + IE AKKSN +HR +G+G+ G     
Sbjct: 459 STEGSGAYFDHEQLHKVAKIVTKNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTF 518

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L +P+AS EA  + +   E I   ++ AS E+A+E+G+Y +F GS   +G    +  G
Sbjct: 519 LRLGLPFASEEAKTLNEAIFETIYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWG 578

Query: 728 LLA-------EVRDELAMNRTSR------LPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +         + +  LA  + S         W+ L++ +   G+RNS  +A  PTA+ + 
Sbjct: 579 VDDVETPSHRKDQSALAFQKYSTQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQ 638

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GV++  +P   NLYV+   +G+F +VN  L+ +L    LW++++ + L    GS+  I
Sbjct: 639 ILGVNECFEPFASNLYVRRVKAGEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKI 698

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           E +PD LK ++ T +E+    +I+ A+ R K+IDQ+QSLNL++ +P+  KL  ++  AW 
Sbjct: 699 ECVPDRLKGLYKTVWEMKMKDVIDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWK 758

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GLKT  YYLR+R A +  + T++      +A+P  D +   +      +      C  C
Sbjct: 759 KGLKTGIYYLRTRPAVNAIQYTVE-----KDALPEVDASPQQNI----PTLDDSETCLSC 809


>gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 729

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/751 (36%), Positives = 426/751 (56%), Gaps = 40/751 (5%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
              GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L
Sbjct: 2   LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
           ++E                    Y        E G+ +    + +       L + + Y+
Sbjct: 61  QKETSG-----------------YATATRELSEIGILSSAYVDFVAKNQFA-LEDMIDYK 102

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD+ F+Y G + L   Y L + G  +E PQ  FMRVA+ +A  + E+ +   E Y+LLS 
Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSL 159

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            ++  +TPTLFN+G +  QLSSCFL  +  D + GI+  L++ A+++K +GG+G     +
Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I GTNG S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLR
Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YE
Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R          + I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC 
Sbjct: 340 RMGLG-----VKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EI   S+ +ETA CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K 
Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KSNH HR +GLG+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G
Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            YSS+ GS    G F  D                +SR  W +LK ++   G+RNS  +A 
Sbjct: 515 TYSSYDGSPISHGQFQFDLW----------CEQPSSRWDWSQLKHQIAEHGVRNSLLIAQ 564

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  
Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ R  ++ Q+QSLNL+L  P+  +++
Sbjct: 625 NNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQIN 684

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            ++  AW  GLKT  YYLRS+ +T+  K T+
Sbjct: 685 AMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 715


>gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
 gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
          Length = 747

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/778 (35%), Positives = 430/778 (55%), Gaps = 44/778 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL +   S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSEKCDSSKVAQQVASSLYDGITAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++                    + P  F   +++ 
Sbjct: 61  EICVGMITSDPDYETLATRITASNIQK--------------------VCPNNFHIAMKKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ E +       + +D+  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 101 AKAGIVTEEVARI-AGRVRDDIDTKRDYDFGYFGLKTLEKSYLQRLDGVLMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+  ++ +     +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGEDID---SVLETYDKMSRGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ EFL+LR N GD+  R  D+ +A WIPDLFMKRV ++  W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D  G+EFE  Y  YE      E +    + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEE-----ESRATATVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S Q+++GV+ SSNLCTEI   +  +ETAVCNL SI L  +       FDY+K
Sbjct: 392 YKDACNQKSNQKNLGVIKSSNLCTEILEFTDKDETAVCNLASIALPKYVDPETKTFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +T  + L+ VID N + +E A+KSN  HR IGLG+ G      L    + S EA 
Sbjct: 452 LHEVTKTVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRHAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           EI     E +   A+ AS ELA+  G Y +F+GS   QGV   D      ++        
Sbjct: 512 EINARIFETMYHAALEASSELAEVDGPYETFEGSPASQGVLQFDMWEGETKL-------- 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R+K  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 --HYDWDALKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  LV++LK+  LW + M   +    GSI NI  IPD++KK++ T +EI    +I+ A
Sbjct: 622 IVNKHLVDDLKEIGLWSKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R ++IDQ+QS+NL+++ P+  KL  ++  +W  GLKT  YYLRS++     + +L+
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKARPIQFSLE 739


>gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
 gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
          Length = 747

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/778 (35%), Positives = 430/778 (55%), Gaps = 44/778 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSENCDSSKVAQQVASSLYDGITVQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                LI  +P+Y  +  R     +++                    + P  F   +++ 
Sbjct: 61  EVCIGLITSDPDYEILATRITASNIQK--------------------VCPNNFHIAMKKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ E +       + +D+  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 101 AKAGIVTEEVARI-AGRVRDDIDTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+  ++ +     +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGEDID---SVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ EFL+LR N GD+  R  D+ ++ WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D  G+EFE  Y  YE +     I     + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEAEGRANAI-----VPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ETAVCNL SI L  +       FDY+K
Sbjct: 392 YKDACNKKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVNEETRTFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L    + S EA 
Sbjct: 452 LHEITKIVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRYAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+     E +   ++ AS ELA+ +G+Y +F+GS   QGV   D      ++        
Sbjct: 512 EMNARIFETMYHASLEASCELAEAQGSYETFEGSPTSQGVLQFDMWEGETKL-------- 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R+K  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 --NYDWDVLKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  LVN+LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 IVNKHLVNDLKKIGLWSKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           ++R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+
Sbjct: 682 AQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739


>gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
 gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
          Length = 816

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/815 (33%), Positives = 430/815 (52%), Gaps = 41/815 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE--MQCLYPEYFCRYIEEG 263
             + +   P+YA +  R    KL  +V  +  +  ++   +       Y      + +  
Sbjct: 63  IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSPISSAFYKVV 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            K              +L   +   RD+   Y G++ L   Y L I+G   E+PQ  FMR
Sbjct: 123 KKHG-----------EFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  +  D + G
Sbjct: 172 VAIGIHQNDI---NAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDG 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG
Sbjct: 229 IFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGG 288

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV +N+ WTL
Sbjct: 289 GKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L    ETG P++
Sbjct: 349 FSPNEAVGLSDVYGEEFEKLYCKYESEGFG------TKVSAHKLWLAILHSQTETGGPYM 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FD 617
            +KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +    +    FD
Sbjct: 403 LYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFD 462

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       L +P+ S 
Sbjct: 463 FEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSA 522

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A  +  +  E I   A+ ASVELA + G Y +F+GS   +G+   D             
Sbjct: 523 MAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWKHKP------- 575

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W  LK  ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  ++G
Sbjct: 576 ---SPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAG 632

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           ++ +VN +L+ +L    +WD AM + +   +GSI NI  IPD++K+++ T +E+    +I
Sbjct: 633 EYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVII 692

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++A+   + T+
Sbjct: 693 DMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTV 752

Query: 917 --KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             K  +     VP        +    P   T+ + 
Sbjct: 753 DAKEAEKVGTKVPQKSLKRKKYMEPQPRKKTAYST 787


>gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Pichia angusta DL-1]
          Length = 816

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/829 (33%), Positives = 430/829 (51%), Gaps = 50/829 (6%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
              G    F+   L   +     GL  + VS  ++L +    + + L+  +L       S
Sbjct: 12  SKSGKESVFSRDILRNHLLSLAQGLNTEFVSIDVILDKVVSGLPESLTVQELLDLTAEVS 71

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            +L     +++ + AR L+  L+++V  +  +   +   +         F   I   V  
Sbjct: 72  ASLTTVHYDHSYLAARVLVRHLQKQVCGSFSENVNRMRQYRPSQYRS--FKSLIAADV-H 128

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            ++++         L   + ++RD   +Y G + +   Y L ++G   E PQ  FMRVA+
Sbjct: 129 EIVNKH-----ADVLNKAIDFDRDLELDYFGFRTMERSYLLKMDGRPCETPQYLFMRVAV 183

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFG 385
           G+     E   R +E Y L+S  +F+ ++PTLFN+GT  P LSSCFL  +  D + GIF 
Sbjct: 184 GIHKGNIE---RVLETYRLMSQKYFIHASPTLFNAGTETPNLSSCFLLAMDGDSINGIFR 240

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            + ++A+++K +GG+G   + +R  G++I GTNG S G++P ++V N TA  V+QG  KR
Sbjct: 241 TIHKSALISKAAGGIGIHVSNIRAAGSYISGTNGTSNGLVPMVQVFNSTAKYVDQGGNKR 300

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA C YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFM++V ++  W LFS 
Sbjct: 301 PGAFCMYLEPWHADVFEFLDLRKNHGKEETRARDLFYALWIPDLFMEKVEKDQEWCLFSE 360

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           D+   L D YG EF   Y  YER+         RK+ A  LW  +L    ETG+P++ +K
Sbjct: 361 DQSPGLSDSYGDEFVKLYNRYEREGR-----YIRKVRAQKLWHAILVAQTETGNPFLLYK 415

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDK 620
           D CN +S QQ++G + SSNLC EI   SS+EETAVCNLGS+ L +   +N+    FD+  
Sbjct: 416 DACNKKSNQQNLGTIKSSNLCCEIVEYSSNEETAVCNLGSLALPSFVHDNKGERKFDFKF 475

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +T  R LD VID+  + + +A+ SN  HR I +G+ G       L +P+ SPE+ 
Sbjct: 476 LHDVCKTLARNLDTVIDVGSYPLPEAEVSNKRHRPIAIGVQGLADVFFKLRMPFGSPESR 535

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++     E I   A+  S ELA+  G Y S+ GS   +GV   D                
Sbjct: 536 KLNILIFETIYHAALETSAELAEIYGPYDSYAGSPISKGVLQYDFWNAKP---------- 585

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK ++   G+RNS  +A+ PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 586 SDMWDWEGLKAKIHRNGVRNSLLVALMPTASTSQIFGFTECFEPITSNMYSRRVLSGEFQ 645

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +L+++L    LW   M +++   +GS+  IE IP D K+I+ T +EI    LI+ A
Sbjct: 646 VVNRYLIDDLVDLGLWGPEMKNEILRMEGSVQAIESIPADTKEIYKTVWEIQQRALIDMA 705

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+NL++  P+  KL  ++  AW  GLKT  YYLR+++A S  K T+   
Sbjct: 706 ADRAPFIDQSQSMNLFMRNPTMSKLTSMHFYAWKKGLKTGIYYLRTQAAASAIKFTVTPS 765

Query: 920 DGKLNAVPVTDPNSSTHSLG---------------IPSSCTSDTECEVC 953
             K +     D      S G               +         C+ C
Sbjct: 766 RFKRSISESRDTTKRRKSNGNEVTEGYNIYDKDNVLACKVGDPETCDAC 814


>gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
 gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
          Length = 747

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/778 (34%), Positives = 427/778 (54%), Gaps = 44/778 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++                    + P  F   +++ 
Sbjct: 61  EVCVGMITSDPDYEILATRIVASNIQK--------------------VCPNNFHIAMKKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ E +     V + +D+  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 101 AKAGIVTEEVARI-AVRVRDDIVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           V++G+  ++       +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VSIGIHGEDIPA---VLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G+L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L +  G+EFE  Y  YE +           + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEEEGRANA-----TVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ET+VCNL SI L  +       FDY+K
Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L  + + S EA 
Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G Y +F+GS   QG+   D      ++        
Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWQGETKL-------- 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R++  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 --NYDWDALKERIREKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739


>gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
 gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
          Length = 792

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/832 (38%), Positives = 461/832 (55%), Gaps = 51/832 (6%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R  Q+ +         +++   +G     +  ++   VE   + L +V    V ++T   
Sbjct: 6   RQEQTAAHQPEQRRQVMQVRRRNGDAEPVDVNKIVKAVERWVADLDEVDPLRVATKTISG 65

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV         ++  +  
Sbjct: 66  LYDGATTAELDKLSIQTAAELISEEPQYSKLAARLLAAYVDKEVRGQQVASFSQSVRYAH 125

Query: 249 Q-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
              L  +    ++                +   L + +    D  FEY GL+ + DRY L
Sbjct: 126 GLGLIGDDTAAFVAR--------------NARKLDDAVDPAGDLRFEYFGLRTVADRYLL 171

Query: 308 HINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
               SR  +E PQ + +RVA GL    +E    A+ FY L+SS  ++ S+PTLFNSGTRH
Sbjct: 172 RQPESRLVVETPQYWLLRVACGL----SETPAEAIGFYRLMSSLAYLPSSPTLFNSGTRH 227

Query: 366 PQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            Q+SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G+
Sbjct: 228 TQMSSCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGI 287

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANW
Sbjct: 288 VPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANW 347

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD FM+RV  +  W+L  P +  +L DLYG+EF+ AY   E++A        R + A  
Sbjct: 348 IPDEFMRRVEADGDWSLIDPSDAPELPDLYGEEFDAAYRIAEKKA-------IRTVKARD 400

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNL 602
           L+ +M+  L +TG+ W+TFKDP N  S Q  V    +H SNLCTEI   +S  ETAVCNL
Sbjct: 401 LYGRMMRTLAQTGNGWMTFKDPSNRLSNQTGVPGNTIHLSNLCTEILEVNSDTETAVCNL 460

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL AH   +  D+ KL ST+RTAV  LD VIDIN +   +A  SN   R +GLGLMG
Sbjct: 461 GSINLGAHVTVDGVDWVKLRSTVRTAVVFLDRVIDINYYPATQAAASNPRWRPVGLGLMG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q A   L +P+ S  A E++    E I   A+  S  L++  G + ++  +   +G   
Sbjct: 521 LQDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAGLSERFGPHPAYAETRAARGELH 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G          +  T    W  L+  +   G+RNS  +AIAPTATIA+I G  + I
Sbjct: 581 PDLWG----------VEPTQTERWAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECI 630

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NL+ +  MSG+F  +N++LV ELK   LW   +   +K  +GS+  I+ +P D++
Sbjct: 631 EPQVSNLFKRETMSGEFLQINTYLVRELKAHGLWTPQIRDQIKRAEGSVQGIDDLPADVR 690

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           ++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYY
Sbjct: 691 ELFRTAWELPQRTLIDLAAARAPYIDQSQSLNLFLSAPTIGKLSSMYLYAWKSGLKTTYY 750

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           LRSR AT ++++T          V V    + + +  +  S  +   CE CQ
Sbjct: 751 LRSRPATRIQQAT----------VAVKPVVAVSDTEALACSLENPESCEACQ 792


>gi|290343605|ref|YP_003494972.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
 gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
          Length = 747

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/778 (34%), Positives = 427/778 (54%), Gaps = 44/778 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++                    + P  F   +++ 
Sbjct: 61  EVCVGMITSDPDYEILATRIVASNIQK--------------------VCPNNFHIAMKKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ E +       + +D+  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 101 AKAGIVTEEVARI-AGRVRDDIVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           V++G+  ++       +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VSIGIHGEDIP---SVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G+L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L +  G+EFE  Y  YE +           + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEEEGRANA-----TVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ET+VCNL SI L  +       FDY+K
Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L  + + S EA 
Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G Y +F+GS   QG+   D      ++        
Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWEGETKL-------- 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R++ +G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 --NYDWDALKERIRGVGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739


>gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
 gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
          Length = 816

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/840 (32%), Positives = 432/840 (51%), Gaps = 60/840 (7%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EEA   L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEEFDSVKIHKLLEEASFNLGDLDLDQLVESVQRGLPSTLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             + +   PNYA +  R    KL  +V  +  +  ++   +  +    + +        K
Sbjct: 63  IASRVIYHPNYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRE--SKSYSPISSAFYK 120

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
               H         +    +   RD +  Y G++ L   Y L + G   E+PQ  FMRVA
Sbjct: 121 VVKKHG-------EFFDKVIDKTRDSSLTYFGIKTLESSYLLKMGGEVAELPQYLFMRVA 173

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIF 384
           +G+   +       VE Y+L+S  +F+ ++PTL+N+G+    LSSCFL  +  D + GIF
Sbjct: 174 IGIHQNDL---NAIVETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKEDSIDGIF 230

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L E A+++K SGG+G     +R  GA+I GTNG S G++P L+V N+TA  V+QGG K
Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGAYIAGTNGSSNGLVPMLRVYNNTARYVDQGGGK 290

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV  N+ WTLFS
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSDWTLFS 350

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L    ETG P++ +
Sbjct: 351 PNEALGLSDVYGEEFEKLYCKYESEGFG------TKVSAHKLWLAILQSQTETGGPYMLY 404

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619
           KD CN +S Q+++G + SSNLC EI   SS EETAVCNL S+ L  +    +    FD++
Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAIAFDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL S  +   R L+ VID+  + ++ A+ SN  HR I LG+ G       L +P+ S  A
Sbjct: 465 KLHSVTKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I   A+ ASVELA + G Y +F+GS    G+   D               
Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFDMWNHKP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W+ LK  ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  ++G++
Sbjct: 576 -SPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEY 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN +L+ +L    +WD AM + +   +GSI  I  IPD++K+++ T +E+    +I+ 
Sbjct: 635 QIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQKVIIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++A+   + T+  
Sbjct: 695 AADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDA 754

Query: 919 VDGKL--NAVPVTDPNSSTHSLGIP-----------------------SSCTSDTECEVC 953
            + +   N VP        +    P                        +      C+ C
Sbjct: 755 SEAEKAGNKVPQKSLKRKKYMEPQPRKKTAYSTPDSELYDIHDSTPITCNIEDSESCQSC 814


>gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
 gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
          Length = 821

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/852 (37%), Positives = 463/852 (54%), Gaps = 64/852 (7%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            A             +++   +G     +  ++   VE   + L +V    V ++T   +
Sbjct: 7   RATPGQAGQEQRRQVMEVRKRNGDTEPVDVNKIVKAVERWVADLDEVDPLRVATKTISGL 66

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV         +       
Sbjct: 67  YDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQ------QVASFSQS 120

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             Y               L+ +    F   +   L + +    D  FEY GL+ + DRY 
Sbjct: 121 IRYAHGL----------GLISDDTAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVADRYL 170

Query: 307 LHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L    SR  +E PQ + +RVA G++    E    A+ FY L+SS  ++ S+PTLFNSGTR
Sbjct: 171 LRHPQSRLVVETPQYWLLRVACGMSRTPAE----AIGFYQLMSSLAYLPSSPTLFNSGTR 226

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           H Q+SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G
Sbjct: 227 HTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNG 286

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++PFLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++N AN
Sbjct: 287 IVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLAN 346

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PD FM+RV  +  W+L  P +  +L DLYG EF+ AY   E++A        R + A 
Sbjct: 347 WLPDEFMRRVEADGDWSLIDPSDAPELPDLYGDEFDAAYRVAEKKA-------VRTVKAR 399

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCN 601
            L+ +M+  L +TG+ W+TFKD  N  S Q  Q    +H SNLCTEI   ++  ETAVCN
Sbjct: 400 DLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGQPANTIHLSNLCTEILEVNNDTETAVCN 459

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL AH   +  D++KL +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLM
Sbjct: 460 LGSVNLGAHVTVDGVDWEKLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLM 519

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G Q A   L +P+ S EA E++    E I   A+  S  LA+  G + ++  +   +G  
Sbjct: 520 GLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAARGDL 579

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D  G             T    W  LK R+   G+RNS  +AIAPTATIA+I G  + 
Sbjct: 580 HPDLWGATP----------TQTRRWAGLKARIAEHGLRNSLLVAIAPTATIASIAGCYEC 629

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   NL+ +  MSG+F  VN++LV ELK R LW   +   ++  +GS+  +  +P ++
Sbjct: 630 IEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGELPAEV 689

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           +++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTY
Sbjct: 690 RELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTY 749

Query: 902 YLRSRSATSVEKSTLK-------GVDGKLNAVPVTDP------------NSSTHSLGIPS 942
           YLRSR AT ++++T+        GV    +A P   P             + T +  +  
Sbjct: 750 YLRSRPATRIQQATVAVTPTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAEALAC 809

Query: 943 SCTSDTECEVCQ 954
           S  +   CE CQ
Sbjct: 810 SLENPESCEACQ 821



 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          ++ + ++V KRNG     D +KI +A+ +
Sbjct: 17 QRRQVMEVRKRNGDTEPVDVNKIVKAVER 45


>gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum]
          Length = 798

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/824 (30%), Positives = 413/824 (50%), Gaps = 40/824 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +  K  ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L
Sbjct: 2   VNGKNYVLKRDGRKEEVHFDKITSRIQKLCYRLNMDIVDPVSITLKVIGGLYPGVTTVEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +T    ++  +    P+YA + AR  +  L+++         +K     +  LY      
Sbjct: 62  DTLAAETAIVMGADHPDYATLAARIAVSNLQKQT--------KKHFSDVISDLYHAVDP- 112

Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
             + G K  L+ +   +    +   L + + Y+RDF++ Y   ++L   Y   ING  +E
Sbjct: 113 --QTGEKTPLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFKLLERSYLFKINGKTVE 170

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ   MRVA+G+  ++ +    A+E YN +S  +F+ S+ TL  +GT +P L S +   
Sbjct: 171 RPQHMLMRVAVGIHGEDID---SAIETYNYMSEGYFIHSSATLLTAGTPYPYLPSTYSIA 227

Query: 376 VPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +PDD L GI+  +     ++  +G +      +R  G  I GTNG S G++P L+V N++
Sbjct: 228 MPDDSLEGIYECISNCIKISNTTGRISVHIQNIRAKGTEIAGTNGVSNGLVPMLRVFNNS 287

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           A    Q   +      +LE WH D+ +FL+L++ TG D  R  D+  A W+PDLFM RV 
Sbjct: 288 AWLNRQSENQPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALWVPDLFMHRVK 347

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+L  P +   L + +G+EFE  YE YE +         ++I A  +WR +     
Sbjct: 348 NDEKWSLMCPHQAQGLPNCWGQEFEKLYEKYESEGR-----FVKQIPARDVWRAICVSQM 402

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFA 612
           ETG P+I +KD CN +S QQ++G + SS+L TE    SSS+E A C   S+  N+  +  
Sbjct: 403 ETGSPYILYKDACNKKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITASVALNMFVNPE 462

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            N +D++KL   ++T  + L+  ID++ +   +A+ SN  HR IG+G+ G      LL +
Sbjct: 463 RNGYDFEKLKQVVKTLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQGLADTFILLRM 522

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ SPEA  +  +  E + + A+ AS E+A+  G YS++ GS   QG    D  G     
Sbjct: 523 PFESPEARSLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQYDMWG----- 577

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +  T    W  LK+R+   G+RNS  +A+ PT + A I G +QSI+P   N+ V+
Sbjct: 578 -----VEPTKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSIEPYLSNVQVR 632

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
              S +F  VN  L+ +L +R LW   +  ++   +GS+ NI  IPDDLK I+ T +EI 
Sbjct: 633 RVNSSEFRDVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPDDLKCIYKTVWEIP 692

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +IE A+ R  +IDQ+Q++N+++  PS   +  ++   W  GLKT  Y LR+   + V
Sbjct: 693 QKIVIEMAADRGAFIDQSQAMNVHIGAPSYAVMSSMHFYGWQKGLKTGMYNLRTNPVSVV 752

Query: 912 EKSTLKGVD--GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +      V    +          S      +  S  +   CE+C
Sbjct: 753 QNGNRSKVSVVQENGEKSDDMKKSPEEDAALQCSLQNPGACEMC 796


>gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
 gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
          Length = 909

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/842 (38%), Positives = 465/842 (55%), Gaps = 51/842 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            A +           + +   +G     +  ++   VE   + L +V    V ++T   +
Sbjct: 102 RATNGPAGAEQRRQVMGVRKRNGDTEPVDVNKIVRAVERWVADLDEVDPLRVATKTISGL 161

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV         +       
Sbjct: 162 YDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQ------QVASFSQS 215

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y        +E         + +  +   L + +    D  FEY GL+ + DRY L  
Sbjct: 216 IRYAHGLGLISDE-------TAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRH 268

Query: 310 NGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
             SR  +E PQ + +RVA GL+    E    A+ FY L+SS  ++ S+PTLFNSGTRH Q
Sbjct: 269 PQSRLVVETPQYWLLRVACGLSGTPAE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQ 324

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++P
Sbjct: 325 MSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGIVP 384

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++N ANW+P
Sbjct: 385 FLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLP 444

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D FM+RV  +  W+L  P E  +L DLYG+EF+ AY   E++A        R + A  L+
Sbjct: 445 DEFMRRVEADGDWSLIDPSEAPELPDLYGEEFDAAYRVAEKKA-------VRTVKARDLY 497

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
            +M+  L +TG+ W+TFKD  N  S Q  +    +H SNLCTEI   ++  ETAVCNLGS
Sbjct: 498 GRMMRTLAQTGNGWMTFKDRSNTLSNQTGEPGNTIHLSNLCTEILEVNNDAETAVCNLGS 557

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL AH   +  D++KL  T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q
Sbjct: 558 VNLGAHVTADGVDWEKLRDTVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQ 617

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A   L +P+ S EA E++    E I   A+  S  LA+  G + ++  +   +G    +
Sbjct: 618 DAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAQTRAARGDLHPE 677

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             G +           +    W  LK RV   G+RNS  +AIAPTATIA+I G  + I+P
Sbjct: 678 LWGAVP----------SQPQRWAGLKARVGEHGLRNSLLVAIAPTATIASIAGCYECIEP 727

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NL+ +  MSG+F  VN++LV ELK R LW  ++   +K  +GS+  +  +P +++++
Sbjct: 728 QVSNLFKRETMSGEFLQVNTYLVGELKARGLWTASIRDQIKRAEGSVQGLAELPAEVREL 787

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLR
Sbjct: 788 FRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTTYYLR 847

Query: 905 SRSATSVEKSTLK-------GVDGKLNAVPVTDPNS-----STHSLGIPSSCTSDTECEV 952
           SR AT ++++T+        GV    +A P    +S      T +  +  S  +   CE 
Sbjct: 848 SRPATRIQQATVAVTSTAQPGVAVASSAQPGGAASSISGFAGTDAEALACSLENPESCEA 907

Query: 953 CQ 954
           CQ
Sbjct: 908 CQ 909


>gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
 gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
          Length = 773

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/786 (33%), Positives = 414/786 (52%), Gaps = 38/786 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++       +    ++   V + C GL    V    V     + +Y G++  +L+   
Sbjct: 1   MYVIKRSQRRENVMFDKITTRVRKLCEGLDSDFVDPVEVTMRVNQGIYAGVTTVELDLLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+Y+ + AR  L  L +E  +      QK   +       ++     EE
Sbjct: 61  AETCAFMSTNHPDYSILAARICLSNLYKETESCYKTLVQKMREYVNPET-SQHAPLVSEE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  +  ++   L  +           ++Y   + L   Y L ++G   E P    M
Sbjct: 120 LASVVANNSKVIQEALDEVLE--------NYDYFAFKTLEKSYLLKMDGRVSERPHQLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+G+   +     RA   +  +    +  +TPTLFN+GT  PQ+SSCFL T   D + 
Sbjct: 172 RVAIGIHGHDMPNVLRA---FRDMRDKRYTMATPTLFNAGTPVPQMSSCFLMTNKADSIS 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +L++ A ++KY+GG+G     VR  G++I GTNG S G++P L+V N+ A  V+QG
Sbjct: 229 GIFDSLKDCATISKYAGGIGISVHDVRARGSYIRGTNGTSNGLVPMLRVFNNAARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH DV+ F+DLRKN G+D  R  D+  A W+PDLFMKRV +N+ W+
Sbjct: 289 GGRRKGSFAVYLEPWHADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWS 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+ G  FE  Y  YE Q         + + A  LW +++ +  ETG P+
Sbjct: 349 LFCPNECPGLSDVCGSRFEDLYARYESQGKAR-----KVMDARKLWDQIVDVQVETGTPY 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           I FKD  N +S QQH+GV+ SSNLCTEI   +S +E AVCNLGSINL     +       
Sbjct: 404 ILFKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTAS 463

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD ++L +     V  L+ VID N + + +A+ SN  HR IG+G+ GF  AL ++ +PY 
Sbjct: 464 FDLEELVNFAGRMVLNLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYD 523

Query: 676 SPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S +A  +     E I + A+  SV LA+ + G + SF+GS  +QG+F  D  G+      
Sbjct: 524 SVDAAGLNLNIFESIYYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWGVKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    W+ L+  V   G++N+  +A  PTA+ A I G ++S +P   N+Y +  
Sbjct: 580 ------SGLYDWEALRADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           ++G+F V+N  L+ +L    +W + + + L   +GS+ NI +IP+D+K ++ T +EI   
Sbjct: 634 LAGEFPVINKHLLRDLTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQR 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +I Q+QS+N+++ EPS  K+  +    W  GLKT  YYLR+R      +
Sbjct: 694 VILDHAAARGPFICQSQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQ 753

Query: 914 STLKGV 919
             L+  
Sbjct: 754 FALEKS 759


>gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus]
          Length = 766

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/818 (32%), Positives = 421/818 (51%), Gaps = 60/818 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              + I   DG   +    ++   +++ C GL    V    +  +    +Y G++ ++L+
Sbjct: 1   MESMYITKRDGRKENVLFDKISARIKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           T    ++  +    P+Y+ +  R  +  L +E   +  +            +   +    
Sbjct: 61  TLAAETAAYMAISHPDYSLLAGRIAVSSLHKETKESFVE-----------TMADLHDYGM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           + + V A +   + +      L   + Y +D  +++   + L   Y L I+G+ +E  Q 
Sbjct: 110 VADDVHAAIQDNAHL------LDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGNIVERIQH 163

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E     ++ Y  LS      +TPTLFN+GT + QLSSCFL  +  D
Sbjct: 164 MLMRVAVGIHKDDIE---SVLDTYTELSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDD 220

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G   + +R  G++I GTNG S G++P L+    TA  +
Sbjct: 221 SVDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFI 280

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+RKG+   YLE WH D+ EFLDL+KN G++  R  D+    W+ DLFM RV  +  
Sbjct: 281 NQAGRRKGSFAMYLEMWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGD 340

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL SP +  DL DL+G +F+ AYE YE         + + I A  L+ K++    ETG 
Sbjct: 341 WTLLSPSDAPDLIDLHGADFDRAYEKYESDG------IGKTIKARTLFAKVVESQIETGG 394

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P+  FKD CN +S QQH+G + SSNLC E+   SS EE AVCNL SINL+ H   +  FD
Sbjct: 395 PYYLFKDSCNAKSNQQHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVKPDKTFD 454

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L  T + A++ L+ VID N + +E+   SN  HR  GLG+        ++  P+ S 
Sbjct: 455 FERLHKTAKQAIKNLNKVIDANFYPLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESE 514

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E I   ++ AS+E A+  G Y SF+GS    G    D  G   EV D   
Sbjct: 515 EAATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWG--HEVDD--- 569

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMS 796
               SR  W +++  +KT GMRNS   A+ PTA+ A+ C G +++ + S   LY +  +S
Sbjct: 570 ----SRHDWTKIRGDLKTYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLS 625

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ EL +  LWD  M + +    GS+  IE IP+  + +    +E+    +
Sbjct: 626 GEFPIVNKYLIRELIKLGLWDGEMKNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAV 685

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           IE A+ R  +IDQ+QS+N++ + P+  K+       W +GLKT +YY+RSR      + T
Sbjct: 686 IEQAAARGPYIDQSQSMNIFFERPTVAKISSALFYGWKLGLKTASYYVRSRPVADPVQFT 745

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +   +      PV D                D EC  C
Sbjct: 746 VSPEE------PVGDE-------------EDDKECLDC 764


>gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
 gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
          Length = 875

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/806 (34%), Positives = 435/806 (53%), Gaps = 34/806 (4%)

Query: 156 SFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
            +N   +   + E   GL    +    ++ +    + D +    +      +  +L    
Sbjct: 16  EYNPPLMRQKLRELSFGLNLDYLDFDKIVQKISSGVPDDVEGWQVIRHAAETVASLTSIH 75

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP---------EYFCRYIEEGV 264
           P+++ + AR  +++L + +    + +  K      +             +   R  ++GV
Sbjct: 76  PDHSILAARLEIDELHKSLRGITFTENLKQLRSSTRVTSEGDNRVPSKRQKVMRAPKKGV 135

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
            +    +  + ++   L + + +ERDF F Y G + L   Y +  N     E PQ  FMR
Sbjct: 136 ISEEFLQMALKYE-KKLNDAIVHERDFNFTYFGWKTLCQSYLIKKNADQIHETPQFLFMR 194

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+ +     E     +E Y L+S  +F+ ++PTLFN+GT +  LSSCFL  +  D + G
Sbjct: 195 VALAIHGP-FEDIDSVIETYELMSRKYFIHASPTLFNAGTVNQYLSSCFLVGMKEDSIEG 253

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           IF  L++ A+++K SGG+G   + +R  GAH+ G+NG S G++P L+V N+TA  V+QG 
Sbjct: 254 IFKTLEDTALISKASGGIGIHVSNIRASGAHVSGSNGTSNGIVPMLRVFNNTARYVDQGG 313

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA C YLE WH DV +FL LRKN G D  R  D+  A WIPDLFMKRV  N  W+L
Sbjct: 314 NKRPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGEWSL 373

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSPDE   L D+YGKEFE  YE YE  A        +++ A  LW ++L    ETG P++
Sbjct: 374 FSPDEAPGLSDVYGKEFEELYEQYEATALP-----MKRVKAQKLWSEILQAQVETGGPFM 428

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQF 616
            +KD CN++S Q+++G + SSNLC EI   SS +ETAVCNL S+ L           + F
Sbjct: 429 LYKDSCNLKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKGSIF 488

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL + ++T  R LD VID+  + I +A+ SN  +R   +G+ G      +L IPY S
Sbjct: 489 DFVKLHAVVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIPYES 548

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I   A+  S+ELA+E GAY +F+GS   QG+   D  GL  +  D L
Sbjct: 549 QEARILNTQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNYDFL 608

Query: 737 AMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                    W ELK R++   G+RNS  +   PTA+ + I G ++S +P   N+Y +  +
Sbjct: 609 YR------DWGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYARRVL 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  VN ++V+   Q  +W+E + + +   +GS+ NI+ +PD +KKI+ T +EI    
Sbjct: 663 SGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIPQRP 722

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R  +IDQ+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A++  + 
Sbjct: 723 LIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAAIQF 782

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGI 940
           T+   +    +V +   +       I
Sbjct: 783 TVNDENTLTGSVELNGSDEEESKTPI 808


>gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta]
          Length = 802

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/759 (35%), Positives = 413/759 (54%), Gaps = 49/759 (6%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             V  +  + +Y G++   L+     ++ T+    P+YA + AR  +  L +E       
Sbjct: 1   SAVAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKET------ 54

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEY 295
             +K+    M  LY   + R         ++ E        +   L + + Y+RDF++ Y
Sbjct: 55  --KKSFSEVMHDLY---YARNSITNQHTPIISEHYYNIIKNNADRLDSAIIYDRDFSYNY 109

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +G + L   Y L ING  +E PQ   MRVA+G+   + +K    +E YN LS  +F  ++
Sbjct: 110 IGFKTLERSYLLKINGKIVERPQHMLMRVAVGIHENDIDK---VIETYNYLSERYFTHAS 166

Query: 356 PTLFNSGTRHPQLSS---------CFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWT 405
           PTLFN+ T + Q+SS         CFL T+  D + GI+  L++ ++++KY+GG+G +  
Sbjct: 167 PTLFNACTNNQQMSSLRLISEALLCFLLTLENDSIKGIYSMLKKCSLISKYAGGIGINVH 226

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD 464
            +R   A        + G++  LK+ N+ AV V+QG  KR GA   YLE WH D+ EFL+
Sbjct: 227 CIRAKSAE---DTNTTNGLVSVLKLYNEIAVYVDQGGNKRPGAFAIYLEPWHADIFEFLE 283

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           L++N GD   R  D+    WIPDLFM+RV  +  W+L  P E   L D++G EF+  Y  
Sbjct: 284 LKRNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPYESPGLADVWGDEFKELYIR 343

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           YE++         +++ A  +W  +L    ETG P++ +KD CN +S  QH+G +  SNL
Sbjct: 344 YEKEGR-----YRKQVEARTVWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIKCSNL 398

Query: 585 CTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           CTEI   S   E AVCNL SI  N+  +     FD+DKL +  +   R LD VID+N + 
Sbjct: 399 CTEIVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAKIVTRNLDKVIDVNFYP 458

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I + K SN  HR IG+G+ G   A  L+   + S EA E+  +  E + + A+  S ELA
Sbjct: 459 IPETKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELA 518

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            E+G Y +++GS   +G+   D   +            T    WDELK ++   G+RNS 
Sbjct: 519 AEKGTYETYQGSPVSKGILQYDMWNVKP----------TDLWNWDELKAKIAEHGVRNSL 568

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ A I G ++SI+P   N+YV+  +SG+F +VN  L+ +L  R LWDE M +
Sbjct: 569 LIAPMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQN 628

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           ++  + GS+ NIERIPDDLK ++ T +EI    ++E A+ R  +IDQ+QSLN+++ +P+ 
Sbjct: 629 EILANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTT 688

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +KL  ++   W  GLKT  YYLR++ A +  + T+    
Sbjct: 689 EKLTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSK 727


>gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a]
          Length = 766

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/786 (35%), Positives = 417/786 (53%), Gaps = 36/786 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G   +    ++   V +   GL    V    V  +  + +Y G++  +L+   
Sbjct: 1   MYVIKRSGLRENIKFDKVTARVRKLTDGLDLKYVDPIEVTMKVNQGIYSGVTTRELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+Y+ + AR  +  L +E  +      ++   +       E+      E
Sbjct: 61  AETCAYMSINHPDYSVLAARICVSNLYKETESCYSTLVKQLRDYVNPET-GEWAPLVSAE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            VK    +   +   L   A          ++Y   + L   Y L +NG   E P    M
Sbjct: 120 LVKVVTENREQVQEALDGFAE--------TYDYFAYKTLEKSYLLKMNGKIAERPHQLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +      A++ Y  + S  +  +TPTLFN+GT  PQ+SSCFL T   D + 
Sbjct: 172 RVAIGIHGDDI---TSALQTYRDMGSKRYTMATPTLFNAGTPTPQMSSCFLMTCKDDSIS 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A ++KY+GGLG     VRG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 229 GIFDTLKNCACISKYAGGLGVSIHDVRGRGSYIRGTNGVSNGLVPMLRVFNNTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG++  YLE WH D+E FLDL+KN G++  R  D+  A W+PDLFM+RV +N  W+
Sbjct: 289 GGRRKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFYALWVPDLFMRRVEKNQKWS 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++GKEF+  YE YE   ++    V   + A  LW  +L +  ETG P+
Sbjct: 349 LMCPNECPGLANVWGKEFDALYEKYEASPNK----VRATLDARKLWNHILDVQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-----HFANNQ 615
           I +KD  N +S QQH+GV+ SSNLCTEI   +S +E AVCNL SINL +     + A   
Sbjct: 405 ILYKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLASINLSSVIRHPYTAEAY 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            DY  L     + VR L+ VID N + + +A+ SN  HR +G+G+ GF  AL +L  PY 
Sbjct: 465 VDYTALVGLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPVGIGVQGFADALIMLRKPYD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  I     E I + A+ AS++ AQ  G + SF GS   QG F  D  G        
Sbjct: 525 SPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPLSQGRFQFDLWG-------- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  T    W+ L+  +   G+RNS   A  PTA+ A I G ++S +P   N+Y +  +
Sbjct: 577 --VQPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQILGNNESFEPFTTNVYNRRVL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN  L+ +L   DLWD+ M + L  H+GS+ NI RIP  +K ++ T +EI    
Sbjct: 635 AGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIARIPRWVKDLYKTVWEIPQRV 694

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  ++ Q+QS+N+++ EP+  KL  +    W  GLKT  YYLR+R      + 
Sbjct: 695 ILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRGLKTGMYYLRTRPRADSIQF 754

Query: 915 TLKGVD 920
            + G  
Sbjct: 755 GVDGAA 760


>gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 818

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/836 (32%), Positives = 437/836 (52%), Gaps = 65/836 (7%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
           T   F+  ++  +++E    L+++    VL    K +   ++   L T +     + I  
Sbjct: 11  TEQDFDESKVLKLLQELSFNLENLQLDDVLESVQKGLPATVTVYQLYTFIAEVIASRIIY 70

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL--YPEYFCRYIEEGVKARLLH 270
            P+YA +  R  L KL  +V        ++  +++      Y     ++ E   K +   
Sbjct: 71  NPDYAILAGRVELRKLYLKVPYNFSDNVERLRNYKSHGAKSYSPISSKFYEVVKKHK--- 127

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
                    +    +   RD  F Y G++ L + Y L I+    E+PQ  F+RVA+G+ L
Sbjct: 128 --------EFFDGLIDKSRDDEFTYFGIKTLENSYLLKIDSEPAELPQFLFLRVAIGIHL 179

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQE 389
           ++        E Y+L+S  +F+ ++PTL+N+G     LSSCFL  +  D + GI+  L E
Sbjct: 180 EDLG---SVAETYDLMSKKYFIHASPTLYNAGGEFNYLSSCFLIAMKDDSIDGIYKTLHE 236

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAV 448
           +A+++K SGG+G     VR  G++I GTNG + G++P L+V N+TA  V+QGG KR GA 
Sbjct: 237 SALISKASGGIGIHVHEVRSNGSYIAGTNGIANGLVPMLRVFNNTARYVDQGGGKRPGAF 296

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             Y+E WH D+ + L++RKN G +  RT D+    WIPDLFM+RV  +  WTL SP E  
Sbjct: 297 AIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADEYWTLMSPSEAP 356

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D+YG +F+  YE YE+Q       +  KI A  LW  +L    ETG P++ +KD CN
Sbjct: 357 GLSDVYGDDFKELYEKYEKQG------LGTKIRAHKLWLAILESQTETGGPYMLYKDACN 410

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
            +S Q+++G + SSNLC EI   SS EETAVCNLGS+ L  +   +     +FD++KL S
Sbjct: 411 EKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDEVIEFDFEKLHS 470

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             +   + L+ VID+  + +E A+ SN  +R I LG+ G       L +P+ S  A ++ 
Sbjct: 471 VTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRLPFESEAARKLN 530

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            +  E I   A+ ASVEL+ + G Y +F+GS   +G+   D                +  
Sbjct: 531 IQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFDMWNHTP----------SKM 580

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W++LK+ ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  +SG+F VVN
Sbjct: 581 YDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVN 640

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L+ +L    +W+ AM + +   +GSI NI+ IP D+K+++ T +EI    +I+ A+ R
Sbjct: 641 KYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEISQKVIIDMAADR 700

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
            K+IDQ+QS+N++L EP+  KL   +  AW  GLKT  YYLR+++A+   + T+   + +
Sbjct: 701 GKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASRAIQFTVDATEAE 760

Query: 923 LNA-------------------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             A                          P ++      S  I  +      C+ C
Sbjct: 761 KAANEKPRGSLKRKKYLETPPRKKTVYSTPDSEVYDIHDSTPITCNIEDSESCQSC 816


>gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 772

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/817 (33%), Positives = 426/817 (52%), Gaps = 53/817 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG+        +  +V+  C GL  + V    V  +  K +  G+S  +L   
Sbjct: 2   KLYVVKRDGSHQEVRLDEITALVQSLCYGLNAEYVDPAAVTVKVVKGVRPGVSTEELNAY 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               + ++     +YA +  R L++ L + + ++  +  +    H    L  +   R  E
Sbjct: 62  AADVAASMTYIHYDYALLAGRILVDNLHKRLDSSFSEIIKNLHGH---GLVSDDLLRISE 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                              L   + +E DF ++Y G + L + Y L I+    E PQ   
Sbjct: 119 TH--------------AATLDAAIAHELDFEYKYFGYKTLENGYLLKIDNRVAERPQHML 164

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+   + E    A+E Y ++S   F  ++PTLF++GTR PQ+ SCFL  V  D +
Sbjct: 165 MRVALGIHGDDIED---AIETYRMMSQKLFTHASPTLFSAGTRIPQMCSCFLLGVRDDSI 221

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L + A ++KY GG+G +   VR  G+ I+ TNG + G+ P ++V N+    V+Q
Sbjct: 222 DGIYRTLGDCAAISKYGGGIGVNVHQVRARGSKINSTNGTASGLEPMVRVFNNMVRHVDQ 281

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGA+  Y+E WH D+   L+L++N G +  +  D+  A W+PDLFM+RV  +  W+
Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDMWS 341

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L D YG EFE  YE YE +         +++ A  L R ++    ETG P+
Sbjct: 342 LMCPHQCPGLADCYGDEFERLYERYESEGR-----YRQRVRAQDLHRFIVETQVETGGPY 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618
           + FKD CN +S QQ++GV+  SNLC EI   S +EETAVCNL SI  N         +D+
Sbjct: 397 MLFKDACNRKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTYDF 456

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL +  +  VR L+ +ID N + I  A++SN  HR IG+G+ G   A  LL +PY S E
Sbjct: 457 EKLKAITKVVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYESEE 516

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G+YS+F GS   +GV   D              
Sbjct: 517 AAVLNKQIAETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYDMWNATP-------- 568

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             ++   W  LK  ++  G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+
Sbjct: 569 --SALWDWQALKDDIRAHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+++L + +++   + + +  H GSI NIE IPD +K ++ TA+E+    +IE
Sbjct: 627 FQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAKRMIE 686

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS NL++ +P+   +  I+  +W  GLKT  YYLR++ A   ++ T++
Sbjct: 687 MAADRNAFIDQSQSFNLFVAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAAHTQQFTVE 746

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                       +                D  C  CQ
Sbjct: 747 QQQQPQCKRKRHNDK------------EDDDVCFSCQ 771


>gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa
           nucleopolyhedrovirus]
          Length = 769

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/786 (32%), Positives = 427/786 (54%), Gaps = 39/786 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           + +  KL +   +G   + +  ++   ++     L    +    +  +  K +Y G+S  
Sbjct: 2   SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++ L + V  +  +  ++   H +        
Sbjct: 62  ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL-------- 113

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                  V   LL  S++  + + L + + +  D+ ++Y G + L + Y   I     E 
Sbjct: 114 -------VSDELL--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKIAER 164

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+
Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+  
Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  
Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  PD    L D+YG +F+  Y  YER+  +       ++ A  L++ ++    E
Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYEREGKQ-----VSQVPARDLFKFIIETQVE 396

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P++ +KD CN ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  
Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L    +T V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY 
Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + A+ AS ELA+  GAY S+ GS   +G+   D           
Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    
Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LIE A  R  + DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A    + 
Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746

Query: 915 TLKGVD 920
           T+    
Sbjct: 747 TVDKSK 752


>gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 769

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/786 (32%), Positives = 427/786 (54%), Gaps = 39/786 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           + +  KL +   +G   + +  ++   ++     L    +    +  +  K +Y G+S  
Sbjct: 2   SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++ L + V  +  +  ++   H +        
Sbjct: 62  ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNL-------- 113

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                  V   LL  S++  + + L + + +  D+ ++Y G + L + Y   I     E 
Sbjct: 114 -------VSDELL--SIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKVAER 164

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+
Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+  
Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  
Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  PD    L D+YG +F+  Y  YER+  +       ++ A  L++ ++    E
Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYEREGKQ-----VSQVPARDLFKFIIETQVE 396

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P++ +KD CN ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  
Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L    +T V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY 
Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + A+ AS ELA+  GAY S+ GS   +G+   D           
Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    
Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LIE A  R  + DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A    + 
Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746

Query: 915 TLKGVD 920
           T+    
Sbjct: 747 TVDKSK 752


>gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1]
 gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1]
          Length = 765

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 418/795 (52%), Gaps = 42/795 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
              + I   DG   +    ++   +++ C GL+   V    +  +    +Y G++ ++L+
Sbjct: 1   MESMYITKRDGRKENVLFDKISARIKKLCYGLEPNFVDHVAIAQKVISGVYTGVTTTELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           T    ++  +    P+Y+ +  R  + +L +E   +  +            +   +    
Sbjct: 61  TLAAETAAYMAIAHPDYSLLAGRIAVSRLHKETKESFVE-----------TMADLHAYGM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           + + V   +   + +      L   + Y +D  +++   + L   Y L I+G  +E  Q 
Sbjct: 110 VADDVHTVIQDNAHL------LDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGKIVERIQH 163

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   + E     +E Y  +S      +TPTLFN+GT + QLSSCFL  +  D
Sbjct: 164 MLMRVAVGIHKDDIE---SVLETYTGMSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDD 220

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A ++K++GG+G   + +R  G++I GTNG S G++P L+    TA  +
Sbjct: 221 SVDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFI 280

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+RKG+   YLE WH D+ EFLDL+KN G++  R  D+    W+ DLFM+RV  +  
Sbjct: 281 NQAGRRKGSFAMYLEVWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGD 340

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTL SP +  DL DL+G +F+ AY+ YE         + + I A  L+ K++    ETG 
Sbjct: 341 WTLLSPSDAPDLIDLHGADFDQAYKKYESNG------IGKTIKARTLFAKVVESQIETGG 394

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
           P+  FKD CN +S Q+H+G + SSNLC E+   SS EE AVCNL SINL+ H  A+  FD
Sbjct: 395 PYYLFKDACNAKSNQRHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVRADRTFD 454

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +++L  T + A++ L+ VID+N + +E+ + SN  HR  GLG+        ++  P+ S 
Sbjct: 455 FERLHRTAKQAIKNLNKVIDVNFYPLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESE 514

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E I   ++ AS+E A+  G Y SF+GS    G    D  G   EV D   
Sbjct: 515 EAATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWG--HEVDD--- 569

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMS 796
               SR  W + K  ++  GMRNS   A+ PTA+ A+ C G +++ + S   LY +  +S
Sbjct: 570 ----SRHDWTKTKADLQKYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLS 625

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ EL    LWD  M + +    GS+  IE IP+  + +    +E+    +
Sbjct: 626 GEFPIVNKYLIKELINLGLWDGEMKNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAI 685

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           IE A+ R  +IDQ+QS+N++ + P+  K+       W +GLKT +YY+RSR      + T
Sbjct: 686 IEQAAARGPYIDQSQSMNIFFERPTMAKISSALYYGWELGLKTASYYVRSRPVADPVQFT 745

Query: 916 LKGVDGKLNAVPVTD 930
           +   +  +N     +
Sbjct: 746 V-SSEKSVNEEDAKE 759


>gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans]
 gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans]
          Length = 867

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/817 (34%), Positives = 431/817 (52%), Gaps = 32/817 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   +G      S+ L   +++   GL  +D     V       +    + S +      
Sbjct: 7   VSDRNGEANKLTSQALAQSLKQLAGGLQIEDADFDAVSRRILDAVPPSATHSSVVQFGGE 66

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY--IEE 262
               +    P++A + AR+ + +L +++    + +                  R+     
Sbjct: 67  VLAAMSTTHPDFANLAARWEISELHKKLQGLSFTENLALLQKLRSSSKAPTVKRHKTSTS 126

Query: 263 GVKARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318
                L+  +  +  L Y   L   ++ +RDF F Y G + L   Y +   N    E PQ
Sbjct: 127 HNDKNLISAAFYEMALRYQTTLDAAIQPDRDFDFSYFGWKTLSKSYLIKRKNEETHETPQ 186

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
             FMRVA+ +     + +   +E Y+L+S   F+ ++PTLFN+GT +  LSSCFL  +  
Sbjct: 187 FLFMRVALAIHGPRGDIDA-VLETYDLMSRKFFIHASPTLFNAGTVNQYLSSCFLVAMIE 245

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L + AM++K SGG+G   + VRG GA+I G+NG S G++P L+V N+TA  
Sbjct: 246 DSIDGIYRTLHKTAMISKASGGVGVHVSNVRGTGAYISGSNGTSNGLVPMLRVFNNTARY 305

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA C YLE WH DV +FL LRKN G +  R  D+  A WIPDLFM+RV QN
Sbjct: 306 VDQGGNKRPGAFCIYLEPWHSDVLDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQN 365

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W LFSPDE   L + +G+EF+  YE YE+          +K+ A  LW ++L    ET
Sbjct: 366 GSWCLFSPDEAPGLQECFGEEFKKLYETYEKTLAP-----AKKMPAQKLWSEILQSQVET 420

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
           G P++ +KD CN +S Q+++G + SSNLC EI   SS  ETAVCNL S+ L +       
Sbjct: 421 GGPFMLYKDSCNNKSNQKNLGTIKSSNLCCEIVQYSSPSETAVCNLASVALPSFVKLQRE 480

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD++ L   ++   + LD+VIDI  + +E AK SN  +R I +G+ G   AL +L I
Sbjct: 481 QAIFDFESLHKIVKVLTKNLDSVIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRI 540

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A  +  +  E I   A+  S+E +++ G Y SF  S   +G F  D  GL  + 
Sbjct: 541 PFHSESARVLNKQIFETIYHAAVETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDN 600

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            + L         W E++++VK  G+RNS  +   PTA+ + I G ++S +P   N+Y +
Sbjct: 601 YEFLF------SDWKEMREKVKQHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTR 654

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+FTV+N ++V++  +  +W+E + + +   +GSI  IE IP +LK+++ T +EI 
Sbjct: 655 RVLSGEFTVINKYMVDDFCRLGIWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIP 714

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ ++ R  +IDQ+QSLNL+L EP+  KL  ++   W  GLKT  YYLR+++A+  
Sbjct: 715 QRVMIDLSADRGPFIDQSQSLNLFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGA 774

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGI----PSSC 944
            K T+   +  L              L +    PSSC
Sbjct: 775 IKFTI-NQENTLRGAVSIRKGLEVKQLSVFGHYPSSC 810


>gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
 gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
          Length = 761

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/786 (34%), Positives = 420/786 (53%), Gaps = 39/786 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           A    KL ++  DG+  +    ++   +     GL    +    +  +  K +Y G++ +
Sbjct: 3   AARENKLYVIKRDGSKQTVLLDKITSKLNRLSYGLNKQFIDPAAITIQVVKTIYAGVTTT 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++   + V  +  +   K   H +        
Sbjct: 63  ELDQHAAKETANMAYIHDDYALLAGRIMVDDNHKHVPDSFVRVVAKLYKHNLVS------ 116

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                      L    +   +   L   + Y+RD+ ++Y   + L + Y   ING   E 
Sbjct: 117 -----------LALFEVASANADALEAQIDYKRDYEYKYFAYKTLENGYLKRINGRVAER 165

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++ +    A+E YNL ++  F  ++PTLF +G   PQLSSCFL T+
Sbjct: 166 IQHMLMRVAIGIHGRDIDA---AIETYNLTANKMFTHASPTLFAAGCPQPQLSSCFLLTL 222

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + G++  L + A ++KY GGLG +    R  G+ I GTNG + GV P L+V N+  
Sbjct: 223 KEDSIKGMYETLADCAQISKYGGGLGVNVHKARARGSAIRGTNGTASGVEPLLRVYNNCV 282

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH D+ +FL+L++N G + ++  D+  A W+PDLFMKRV Q
Sbjct: 283 RHVDQGGKRKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQ 342

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  PD    L D+Y  EFE  YE YE      E +   ++ A +L+R ++    E
Sbjct: 343 NEMWSLMCPDRCPGLSDVYSLEFEKLYEQYE-----SENRFTCQVEARSLFRTIIETQVE 397

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P+I +KD CNI+S Q+++G +  SNLC EI   SSSEE AVCNL S+ +     +  
Sbjct: 398 TGTPYILYKDACNIKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSGV 457

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+  L S  +  V+ L+ +IDIN + +E AK+SN  HR +G+G+ G   A  +L +PY 
Sbjct: 458 FDFVALKSVTKIVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYE 517

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A  +  +  E + + A+ AS +LA+  G YSS+  S    GV   D           
Sbjct: 518 SDKAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWN-------- 569

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  T+   W +LK R+   G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 570 --VQPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVL 627

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV +L + +L+D+ M + +    GS+  I+RIPDD+K ++ T +E+    
Sbjct: 628 AGDFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKN 687

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A+ R  +IDQ+QS N+++ +PS   L  ++   W  GLKT  YYLR++ A      
Sbjct: 688 LIDMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAADAIAF 747

Query: 915 TLKGVD 920
           T+    
Sbjct: 748 TVDKCS 753


>gi|297268642|ref|XP_002799730.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 711

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/661 (39%), Positives = 392/661 (59%), Gaps = 23/661 (3%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L+ L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PT
Sbjct: 67  LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123

Query: 358 LFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I G
Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q       
Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQGR----- 298

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHR 418

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS
Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGS 478

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +            T    W+ LK+ +   G+RNS  +A  PTA+ A 
Sbjct: 479 PVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQ 528

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I
Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648

Query: 895 MGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
            GLKT  YYLR+R A +  + TL K        +   +     ++  +  S  +  EC +
Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRDECLM 708

Query: 953 C 953
           C
Sbjct: 709 C 709


>gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 763

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/788 (32%), Positives = 420/788 (53%), Gaps = 54/788 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC--------------SGLQDVSSKIVLSETYKNM 189
           ++ ++  DG+  + +  ++   +   C              +GL+ V    +++    ++
Sbjct: 6   RMNVIKRDGSSEAVSFDKIMTRIGRLCWAENAKPNHSGRVQNGLE-VDISRIVASICSSV 64

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            D ++   L+      + +++   P+Y  + AR  +  L ++   +V       T+ +M 
Sbjct: 65  VDNITTVQLDDLTADKAASMVTNHPDYGILAARIAVSNLHKQSSDSVVD-----TYTKMS 119

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            +  + F + +              + +   L   +KY+RD+ F+Y G   +   Y   +
Sbjct: 120 SMLSDEFMQVVRAH-----------EQEFQAL---VKYDRDYDFDYFGFSTMKRLYLTKV 165

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G  +E PQ  ++RVA+ L  ++  K     E Y+ LS   F  ++PTLFN+G R+  L+
Sbjct: 166 DGKVVERPQHTYLRVAIALWGEDIAK---VKETYDALSKRKFTHASPTLFNAGFRNANLA 222

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  IF +L + A L+K+ GG+G   + +RG G+ I GTNG+S G++P LK
Sbjct: 223 SCFLVHVDDSLTNIFKSLGDVAQLSKFGGGIGLHLSDIRGRGSKIQGTNGESDGIVPMLK 282

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++ +R  ++  A W+ DLF
Sbjct: 283 VYDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLF 342

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  +  W+LF P E   L D +GKE+E  Y  YE +      +  + + A  +W  M
Sbjct: 343 MKRVEADVAWSLFDPKECPGLTDAFGKEYEDLYLRYESEG-----RAKKVVKARDVWNAM 397

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ETG P++  KD  N+++ Q + G +  SNLC EI   +S++ETAVC +GSI L  
Sbjct: 398 IITQIETGMPYVLNKDSVNVKNMQSNAGTITGSNLCAEIVEYTSTDETAVCVIGSIVLQN 457

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +  N  +D++ L   ++   + LD  ID+  + I +AK SN   R IG+G+ G Q     
Sbjct: 458 YVKNGAYDFEDLRKHVKILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFK 517

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ S  A  +  E  E I F A+ AS ELA+E G + +F+GS   +GV      G  
Sbjct: 518 LRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTE 577

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       +RL W  L++RVK  G+RNS   A+ PTA+ A ICG  ++++P   NL
Sbjct: 578 P----------VTRLDWKTLEERVKK-GVRNSLTTALMPTASTAQICGSVEAMEPITSNL 626

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F VVN++LV +L  R  W EAM + +  + GSI  +  I  +LK I+ TA+
Sbjct: 627 YSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAW 686

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           E+    +I+ A+ R  ++DQ QS+NL++  PS K +  +   AW  GLKT  YY RS+ A
Sbjct: 687 ELSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPA 746

Query: 909 TSVEKSTL 916
            +    T+
Sbjct: 747 ANAIAVTV 754


>gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895]
 gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895]
          Length = 864

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/812 (34%), Positives = 430/812 (52%), Gaps = 33/812 (4%)

Query: 144 KLKIMMDD-GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
           K+ I+ DD G   +F+ ++L   + +   GL   D      +      +   + +S+L  
Sbjct: 6   KIFIISDDSGLTEAFDERKLLESLRKLQFGLKINDADIDKAVKRIAAGIGGDIRDSELVA 65

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY--KKPQKATHHEMQCLYPEYFCR 258
            +  +  ++I + P+++ + AR  ++ L + +L   +           +    +     R
Sbjct: 66  YIGETLASMITRHPDFSLLAARVEIKVLHKRLLGLGFTGNLAVLCESGDSPEGHATKRKR 125

Query: 259 YIEEGVKARLLHESMMDFDLV-----YLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
            +    +  +  E    +DL       +   +    DF F Y G + L   Y L   G  
Sbjct: 126 AMSPCTRGPVRREL---YDLAVQHRNIIDQAIDDTLDFTFTYFGWKTLCKSYLLKHQGRV 182

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ  FMRVA+ L    +    R +E Y L+++ +F+ ++PTLFN+GT    LSSCFL
Sbjct: 183 HETPQYMFMRVALALHGP-SGDIDRVLETYRLMANKYFIHASPTLFNAGTTSQFLSSCFL 241

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+ AL + A+++K SGG+G   + +R  G++I GTNG S G++P L V N
Sbjct: 242 LGIHEDSIDGIYNALHKAALISKASGGIGIHVSDIRANGSYISGTNGTSNGLVPMLSVFN 301

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            TA  V+QG  KR GA C YLE WH DV +FL LR+N G +  R  D+    WIPDLFMK
Sbjct: 302 STARYVDQGGNKRPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMK 361

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  N  W+LFSP+E   L D YG+ FE  Y  YER+ +      +R++ A  LWR++L 
Sbjct: 362 RVENNGEWSLFSPNEAVGLSDCYGEAFEQLYVRYERELEP-----YRRVKAQELWREILL 416

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG P++ +KD CN +S Q+++G + SSNLC EI   SS +E AVCNL S+ L    
Sbjct: 417 SQTETGGPFMLYKDACNSKSNQKNLGTIKSSNLCCEIVEYSSRDEVAVCNLASVALPTFV 476

Query: 612 ANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +       FDY +L S ++   R LD  IDI  + + +A++SN  HR + LG+ G     
Sbjct: 477 SVTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPVPEAERSNKKHRPLALGVQGLADVF 536

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L+  P+   EA ++  E  E I   A+  S+ELA E G Y+SF GS   +G    D  G
Sbjct: 537 MLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAEYGVYASFVGSPASKGELQFDLWG 596

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
              +    L         WDELK+++K   G+RNS  +   PTA+ + I G ++S +P  
Sbjct: 597 RNKDNYQFLY------DDWDELKEKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPMT 650

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             +Y +  +SG++T+VN ++V +     +W E + + +    GSI  I+ IP DLK ++ 
Sbjct: 651 SMIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLYK 710

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +E+    LI+ ++ R  ++DQ+QSLNL+L EP+  KL  ++  AW  GLKT  YYLR+
Sbjct: 711 TVWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLRT 770

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           ++A +  + TL   +     V + +  +   S
Sbjct: 771 QAAANAIQFTLTDENTLSGPVKLREGAAVAQS 802


>gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 800

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/839 (36%), Positives = 449/839 (53%), Gaps = 52/839 (6%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFN---SKRLEMIVEEACSGLQDVSSKIVLSE 184
            R A       +     + I   D    + N      L   + +  + L D     V + 
Sbjct: 2   PRPATPAGPEPSEGEHHMTIAPADPVSATENDGPGTALLRTLTDLTADLPDTDPGKVAAA 61

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
             +    G   ++L +    ++  LI ++P Y+++ AR L   +  E             
Sbjct: 62  ALRGRNAGSDAAELHSLATEAAAGLISEDPAYSRLAARLLTRTIAEEAAGQG-------- 113

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQIL 301
                      F   +  G +  L+ +    F       L   +    D  F Y GL+ L
Sbjct: 114 --------ASSFTASVATGHREGLIADRTAAFVALHAARLDALIDLGADDRFGYFGLRTL 165

Query: 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTL 358
           Y RY L   I    IE PQ F +RVA GLA  ++ +  +     Y L+S   ++ S+PTL
Sbjct: 166 YSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSPRALEEVAALYRLMSRLDYLPSSPTL 225

Query: 359 FNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FNSGTRHPQ+SSC+L   P D+L  I+G   + A L+K++GG+G  ++ +R  G+ I GT
Sbjct: 226 FNSGTRHPQMSSCYLLDSPLDELDSIYGRYHQVARLSKHAGGIGLSYSRIRARGSLIRGT 285

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG S G++PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH
Sbjct: 286 NGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDARRTH 345

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           ++N A+WIPD FM+RV  +A W+LFSP +V +L DL+G++F+ AY   E           
Sbjct: 346 NLNLAHWIPDEFMRRVEADAQWSLFSPVDVPELVDLWGEDFDAAYRRAEAAGLAR----- 400

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVGVV-HSSNLCTEITLNSSSE 595
           R +SA  L+ +M+  L +TG+ W+TFKD  N   +     G V HSSNLCTEI   +   
Sbjct: 401 RTVSARDLYGRMMRTLAQTGNGWMTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDG 460

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           ETAVCNLGS+NL A  + +  D+++L +T+RTAV  LD V+DIN +  E+A +SN   R 
Sbjct: 461 ETAVCNLGSVNLGAFVSGDGIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRP 520

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG MG Q     L +P+ S EA  ++    E I   A  AS +LA+  G   ++  + 
Sbjct: 521 VGLGAMGLQDVFFKLRLPFDSAEARALSTRIAERIMLAAYEASCDLAERNGPLPAWAETR 580

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +GV   D          +  +N   R  W+ L+ RV  +GMRNS  +AIAPTATIA+I
Sbjct: 581 TARGVLHPDHY--------DTTLNWPER--WEALRARVAAVGMRNSLLLAIAPTATIASI 630

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GV + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+   GS+    
Sbjct: 631 AGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDAQTREALREASGSVQGFT 690

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            +P++++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  
Sbjct: 691 WVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQ 750

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           GLKTTYYLRSR AT + ++    V       P            +  S  +   CE CQ
Sbjct: 751 GLKTTYYLRSRPATRIARAASAAVPVPAQVTPED---------AVACSLENPESCEACQ 800


>gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
 gi|307768605|gb|EFO27839.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
          Length = 1038

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/832 (31%), Positives = 410/832 (49%), Gaps = 111/832 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++  DG   + +  ++   + + C GL    V    +  +    +Y G++  +L+     
Sbjct: 13  VVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAAE 72

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +  +I K P+YA + +R  +  L ++         +K      + LY     +    G 
Sbjct: 73  IAADMITKHPDYATLASRIAVSNLHKKT--------EKLFSKVSKRLYNATHPK---SGR 121

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L+ +++ D    +   L + + +ERDF + Y GL+ L   Y L ING   E PQ   
Sbjct: 122 HMPLISKNIFDIIQNNADILDSAIIHERDFCYTYFGLKTLERSYLLQINGELAERPQHML 181

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+     E    A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+  D +
Sbjct: 182 MRVALGIHGDNIEA---ALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFDDSI 238

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A     
Sbjct: 239 EGIFETLKKCALISKSAGGIGLNVHCIRATGSAIAGTNGVSNGLVPMLRVFNNAAR---- 294

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
                                     KN GD+  R  D+    W+PDLFM+RV  +  W+
Sbjct: 295 --------------------------KNVGDELERCRDLFFGLWVPDLFMERVRDDKVWS 328

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D +G+ FE  Y  YE +         +++ A  LW  +++   ETG P+
Sbjct: 329 LMCPAECPGLEDSWGEAFEKLYMQYEEEGR-----YRKQVPARKLWETIVSTQIETGMPY 383

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619
           + +KD CN ++ QQ++G +  SNLCTE+ L SS EE AVCNL SI L    ++   FD+ 
Sbjct: 384 MVYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALSRFVSSEMTFDFK 443

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L    +  VR L+ VID N + + +A++SN  HR IG+G+ G   A  L+  P+ S +A
Sbjct: 444 MLREITKVVVRNLNKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKA 503

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++     E + + A+ AS ELA E+G Y S++ S     +   D  G+           
Sbjct: 504 RDLNKRIFETMYYAALEASCELAMEQGPYESYERSP----ILQFDMWGVTP--------- 550

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T++  W+ L+K++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y ++ +SG F
Sbjct: 551 -TNQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSF 609

Query: 800 TVV----------------------------------------NSFLVNELKQRDLWDEA 819
            V                                         N  L+N+L + DLWD+ 
Sbjct: 610 QVKFHDTLLIRFERITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDLMRLDLWDDD 669

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           M  ++  + GSI NIERIP +++ ++ T +E+    +I+ A  R  +ID +QSLN+++  
Sbjct: 670 MKLEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIFIAR 729

Query: 880 PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           P+   +  ++   W  GLKT  YYLR+R A    + T+     K  A    D
Sbjct: 730 PNYGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRLKDYANANAD 781


>gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Callithrix jacchus]
          Length = 711

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 391/661 (59%), Gaps = 23/661 (3%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L+ L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PT
Sbjct: 67  LKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123

Query: 358 LFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I G
Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +
Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-----RR 298

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHR 418

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G Y +++GS
Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGS 478

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A 
Sbjct: 479 PVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQ 528

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I
Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648

Query: 895 MGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
            GLKT  YYLR+R A +  + TL K        V   +     ++  +  S  +  EC +
Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSLENRDECLM 708

Query: 953 C 953
           C
Sbjct: 709 C 709


>gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 891

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/817 (33%), Positives = 422/817 (51%), Gaps = 40/817 (4%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGT---LISFNSKRLEMIVEEACSGLQ--DVSSK 179
           +S +  +   S  D     K+     D +      F+ KRL   + +  + L    +   
Sbjct: 3   KSHITPSSQSSDGDGNSDSKVNQHKSDDSFTKREDFDIKRLSRFLLKLTTNLDVKHLDLD 62

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            ++S     +   ++  +L   +  +  +     P+YA +  R    ++++ V T+    
Sbjct: 63  SIVSTVEVGLPAKVTLDELYGLVSETLASRTIYHPDYALLAGRVAARRIQKHVSTSFSGA 122

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY---LANDLKYERDFAFEYL 296
             K  +H                     ++ ES+    + +     + ++ +RDF   Y 
Sbjct: 123 VIKLWNHRSSVTNNRSNGNKTSRTYS--IVSESLYKIVMQHRHFFDSLIEKDRDFDLTYF 180

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            ++ L   Y L IN    E PQ  F+RVA+G+     +     VE Y L+SS +F+ ++P
Sbjct: 181 AIKTLERSYLLKINDEMAETPQYMFLRVAIGIHGNNLDD---VVETYELMSSRYFIHASP 237

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           TLFN+G+ +  LSSCFL  + DD + GI+  L + A+++K SGG+G +   +R  G+ I 
Sbjct: 238 TLFNAGSEYNYLSSCFLVDMEDDSIDGIYKTLHKTALISKASGGIGLNVHNIRASGSLIA 297

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            TNG S G++P L+V NDTA  V+QG  KR GA   Y+E WH D+   LD++KN G +  
Sbjct: 298 STNGTSSGLVPMLRVFNDTARYVDQGGNKRPGAFAIYIEPWHADIFSVLDMKKNHGKEEL 357

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  D+  A WIPDLFM++V  +  W LFSPDE   L D YG EF   Y  YE +      
Sbjct: 358 RARDLFFALWIPDLFMQKVKDDEDWCLFSPDEAPGLADCYGDEFVDLYNQYEAEGRAR-- 415

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
                + A  LW  +L    ETG P++ +KD CN +S Q+++G + SSNLC EI    SS
Sbjct: 416 ---TVVKAHKLWLAILESQTETGGPYMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYCSS 472

Query: 595 EETAVCNLGSINLLAHFANN----------QFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EETAVCNLGS+ L A   +           +FD++KL S  +   R L+ VID+  + +E
Sbjct: 473 EETAVCNLGSLALPAFIKSVSIDNSDEEVLEFDFEKLHSITKVLTRNLNKVIDVTLYPVE 532

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             K SN  HR I LG+ G       L +P++S EA ++  +  E I   A+ ASVELA  
Sbjct: 533 STKVSNMKHRPIALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYHAAVEASVELAMS 592

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y+SF+GS   +G+   D                     WD LK+ VKT G+RNS  +
Sbjct: 593 EGPYNSFEGSPASKGILQFDLWDHKPSELYN---------DWDSLKESVKTHGLRNSLLV 643

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   NLY +  ++G++ V N +LV +L    LW+ A+ + +
Sbjct: 644 APMPTASTSQILGYNECFEPYTSNLYTRRVLAGEYQVANKYLVKDLIDLGLWNSAVRNKI 703

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
              +GSI NI  IP +LK+++ T +EI    +I+ A+ R K+IDQ+QS+N++L  P+  K
Sbjct: 704 IVDNGSIQNISSIPQELKELYKTVWEISQKVIIDMAADRGKFIDQSQSMNIHLQNPTFGK 763

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           L   +   W  GLKT  YYLR+++A+   + T+   +
Sbjct: 764 LTSCHFYGWQKGLKTGMYYLRTQAASRAIQFTVNNEE 800


>gi|239982207|ref|ZP_04704731.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces albus J1074]
 gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
 gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
          Length = 791

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/826 (36%), Positives = 441/826 (53%), Gaps = 51/826 (6%)

Query: 145 LKIMMDDGTLISFNSKRLE-------MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           + I   D +     ++ ++         + +  + L D     V +   +       E++
Sbjct: 1   MTIAPADPSTADVRAEEIQGPGGALLRTLTDLTADLPDTDPGRVAAAALRGRNAASDEAE 60

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L +    ++  LI ++P Y+++ AR L   +  E                        F 
Sbjct: 61  LRSLATEAAAGLISEDPAYSRLAARLLTRTIAEEAAGQGVT----------------TFT 104

Query: 258 RYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
             +  G +  L+ +    F       L   +    D  F Y GL+ ++ RY L    +R 
Sbjct: 105 ESVATGHREGLIADRTAAFVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQ 164

Query: 314 -IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            IE PQ F +RVA GLA  ++ +        Y L+S+  ++ S+PTLFNSGTRHPQ+SSC
Sbjct: 165 VIETPQHFMLRVACGLAEDDSARALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSC 224

Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           +L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFL  
Sbjct: 225 YLLDSPKDELESIYDRYHQVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNT 284

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG++ RRTH++N A+WIPD FM
Sbjct: 285 LDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFM 344

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +A W+LFSP +V +L DL+G  F+ AY   E +         R I A  L+ +M+
Sbjct: 345 RRVDADADWSLFSPSDVPELTDLWGDAFDAAYRAAEARGLAR-----RTIPARELYGRMM 399

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L +TG+ W+TFKD  N  + Q  +    VHSSNLCTEI   +   ETAVCNLGS+NL 
Sbjct: 400 RTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLG 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           A       D+++L   +RTAV  LD V+DIN +  E+A++SN   R +GLG MG Q    
Sbjct: 460 AFVDGGAIDWERLDEAVRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA  ++    E I   A   S +LA++ G   ++  +   QGV   D    
Sbjct: 520 QLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHYDT 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                +           W+ L+ RV   GMRN+  +AIAPTATIA+I GV + I+P   N
Sbjct: 580 DLAWPER----------WEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSN 629

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+ +  +SG+F  VNS+LV +LK+  +WD      L+   GS+     IP++L+ ++ TA
Sbjct: 630 LFKRETLSGEFLQVNSYLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTA 689

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +E+    LI+ A+ R  ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR A
Sbjct: 690 WELPQRGLIDMAAARTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPA 749

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T +     +   G   A       ++  +  I  S  +   CE CQ
Sbjct: 750 TRI----ARAAGGSAPATATVPAQAAPDAEAIACSLENPESCEACQ 791


>gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
 gi|51701818|sp|Q8SR37|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 768

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 426/794 (53%), Gaps = 43/794 (5%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
                  +   +E     L+   V    ++        + ++  +       ++ ++I K
Sbjct: 13  EKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMITK 72

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P Y ++++R ++  +    + +  +K +          Y +     + E +   +L   
Sbjct: 73  HPEYGQISSRIIVSYIHEITMDSFVEKIK----------YIQKHRGMVSEEMYGIILEHG 122

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                   +   + YE DF F Y G+  L   Y + +    IE PQ  FMRVA+ +   +
Sbjct: 123 ET------IEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTD 176

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENA 391
            EK +   E YNLLS  +F  +TPTL+NS  ++PQL+SCFL T   D + G++  + + A
Sbjct: 177 FEKVR---EVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAA 233

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCA 450
           ++ KYSGG+G +   +R  G+ +  T G+S G+IP ++V N T   +NQG +R+ G++  
Sbjct: 234 IITKYSGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAI 293

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +LE WH+++ +FL+LRKNTG +  R  D+ TA WI DLFM+RV  N  W+LF P +   L
Sbjct: 294 FLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGL 353

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            D++G+EF   Y  YE+   R        + A  LW+ ++    ETG P++ +KD CN  
Sbjct: 354 SDVWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           S QQH+G + SSNLC EI   SS EET+VCNL SI L     +  FD++     ++    
Sbjct: 408 SNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTV 467

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VID N + +E+A++SN  +R IG+G+ G      +L + + S  A  +  +  E +
Sbjct: 468 NLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAM 527

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            + A+ AS ELA++ G + S++GS   +G+F  +  G  A          +    W+ L+
Sbjct: 528 YYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKA----------SGNWDWEGLR 577

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +R++  G+RNS  +A+ PTA  + I G +++ +P   N+Y +   +G+F +VN  LVN+L
Sbjct: 578 ERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDL 637

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW   M + +  ++GSI NI  IP ++++I+ TA+EI    +I+ A+ RQ ++DQ+
Sbjct: 638 VRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQS 697

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T+   D KL    ++
Sbjct: 698 QSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTV---DKKLAEKTLS 754

Query: 930 DPNSSTHSLGIPSS 943
             N +     + SS
Sbjct: 755 SMNDTDDPCSMCSS 768


>gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
 gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
          Length = 798

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/802 (37%), Positives = 438/802 (54%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      +S  LI ++P Y+++ A
Sbjct: 32  LLRTLTELTADLPDADPGRVAAAALRGRSARADEAELRELATEASAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +R E  +    +                F   +  G +  L+ +   +F     
Sbjct: 92  RLLTLTIRAEAASQGVTR----------------FTESVAVGHREGLIADRTAEFVRLHA 135

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +    D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA   T+  
Sbjct: 136 ERLDAAVDPAADDRFGYFGLRTLHSRYLLRHPITRKVIETPQHFMLRVASGLAQDATDHA 195

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 196 VDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 255

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 256 KHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 315

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 316 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFSPSDVPELVDLW 375

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G EF+ AY   E +         + + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 376 GAEFDAAYRAAEERGLAR-----KTMPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 430

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              G V+HSSNLCTEI   +   ETAVCNLGS+NL A   +   D+++L  T+RTAV  L
Sbjct: 431 AEPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGDIDWERLDETVRTAVTFL 490

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S  A  ++    E I  
Sbjct: 491 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAGARALSTRIAERIML 550

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D             ++ T    W  L++R
Sbjct: 551 AAYEASADLAERHGPLPAWEKTRAARGVLHPDHY----------DVSLTWPERWTALRER 600

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LVN+LK 
Sbjct: 601 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKA 660

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+  +GS+ +   IP D++ ++ TA+EI    LI+ A+ R  ++DQAQS
Sbjct: 661 LGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQAQS 720

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +     +   G+  A       
Sbjct: 721 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI----ARAAQGRTPAEAALPAQ 776

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +     +  S  +   CE CQ
Sbjct: 777 QTADPDAVACSLENPESCEACQ 798


>gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
 gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
          Length = 790

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/810 (37%), Positives = 436/810 (53%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLAIGIVAEAAGQG----------------ASGFAASVAVGHREGLIGDRT 118

Query: 274 MDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL 328
            +F       L   +  E D  F Y GL+ LY RY L   I    IE PQ F +RVA GL
Sbjct: 119 AEFVATHAARLDALIDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGL 178

Query: 329 ALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +  W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E +         + + A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEAKGLAR-----KTMPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N   +     G VVHSSNLCTEI   +   ETAVCNLGSINL A   N + D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +   +A  SN   R +GLG MG Q     L +P+ S  A  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  AS +LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDH----------FDVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIAKTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP+D++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++          
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIARA---AGSSAAA 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + P+    +   +  I  S  +   CE CQ
Sbjct: 761 SAPIPVQQAVPDADAIACSLENPESCEACQ 790


>gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces jumonjinensis]
          Length = 811

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/802 (37%), Positives = 434/802 (54%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 45  LLRTLTDLTADLPDTDPGRVAAAALRGRHAGSDAAELRGLATDAAAGLISEDPAYSRLAA 104

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +  E                        F   +  G    L+ +    F     
Sbjct: 105 RLLTRTIADEAEGQG----------------AVSFSASVAVGFAEGLIADRTAAFVTLHA 148

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +    D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++ + 
Sbjct: 149 ARLDALIDPAADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSTRA 208

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 209 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 268

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 269 KHAGGIGLSYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 328

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 329 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVPELVDLW 388

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G +F+ AY   E           + + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 389 GDDFDTAYRRAEAAGLAR-----KTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 443

Query: 575 HVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            +    VHSSNLCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  L
Sbjct: 444 ALPGRTVHSSNLCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVRTAVTFL 503

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN+  R +GLG MG Q     L +P+ SP A  ++    E I  
Sbjct: 504 DRVVDINFYPTEQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIML 563

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   ++  +    GV   D         D           W+ L++R
Sbjct: 564 AAYEASADLAERHGPLPAWNETRTAHGVLHPDHYNTTPHWPDR----------WNALRER 613

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV ELK 
Sbjct: 614 IAATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKN 673

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+  +GSI N  ++P D+++++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 674 LGVWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQS 733

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  G+KTTYYLRSR AT +     +          V  P 
Sbjct: 734 LNLFLETPTIGKLSSMYAYAWKQGIKTTYYLRSRPATRI----ARAASNTNAGATVPVPA 789

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +T    +  S  +   CE CQ
Sbjct: 790 QTTPEDAVACSLENPESCEACQ 811


>gi|322815075|gb|EFZ23824.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 731

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/747 (36%), Positives = 411/747 (55%), Gaps = 42/747 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L+  
Sbjct: 5   DLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVELDKL 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +  ++   + K P+Y  +  R  +  L +    +V +       H++            +
Sbjct: 65  IAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLETFSILHKHKIH-----------D 113

Query: 262 EGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR----- 313
            G  A LL + + +        L   + Y+RD  FE+ G + L   Y L ++  R     
Sbjct: 114 TGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ  F+RVA+G+     E  +R  E Y+ +S  +F  +TPTLFN+GT  PQ+SSCFL
Sbjct: 174 AERPQQMFLRVALGIHG---EDMERVKETYDHMSLGYFTHATPTLFNAGTPFPQMSSCFL 230

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+V N
Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDLFM+
Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV     WTL  P     L D YG +F+  YE YER     E +  + + A +LW  +L 
Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           +  ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI L    
Sbjct: 406 LQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465

Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G      L
Sbjct: 466 DKERKIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D     
Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                     R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P   N+
Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++   +
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY 876
           EI    LIE A  R K+IDQ+QSLNL+
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLF 723


>gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 804

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/809 (37%), Positives = 447/809 (55%), Gaps = 46/809 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +  + G  E++L +    ++  LI +EP Y+K+ A
Sbjct: 26  LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRSLATEAAAGLIGEEPEYSKLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY- 280
           R L   +  E                      + F   +  G +  L+ +S  +F   + 
Sbjct: 86  RLLTRAIADEAAGQG----------------ADSFSASVAVGHREGLIADSTAEFVTAHT 129

Query: 281 ------LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332
                 +   L    D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA   
Sbjct: 130 ARLDALVDRALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDL 189

Query: 333 TEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390
           +E+      E Y + S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + 
Sbjct: 190 SERALDDVAELYRMTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQV 249

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C 
Sbjct: 250 ARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACV 309

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +  W+LFSP +  +L
Sbjct: 310 YLETWHADIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVDAPEL 369

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI- 569
            DL+G+EF+ AY   E +         +++ A  L+ +M+  L +TG+ W+TFKD  N  
Sbjct: 370 VDLWGEEFDAAYRKAEAEGR-----ALKQVPARQLYSRMMRTLAQTGNGWMTFKDAANRT 424

Query: 570 RSPQQHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRT 627
            +     G V HSSNLCTEI   +   ETAVCNLGS+NL AH   + + D+++L  T+RT
Sbjct: 425 ANQTAEAGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDRTVRT 484

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  LD V+DIN +  E+A  SN   R +GLGLMG Q     L +P+ SPEA  ++    
Sbjct: 485 AVTFLDRVVDINFYPTEEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALSTRIS 544

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A  AS +LA+  G + ++  +   +GV   D                     W+
Sbjct: 545 ERIMLAAYEASCDLAERHGPHPAWAETRTARGVLHPDHY---------TGAQAAWPERWE 595

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ R+ T GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV
Sbjct: 596 ALRTRMATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLV 655

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK+  +WD      L+  +GS+ ++  +P D++ ++ TA+EI    LI+ A+ R  ++
Sbjct: 656 NDLKKLGVWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYL 715

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLNL++  P+  KL  +Y  AW  G+KTTYYLRSR AT + +S   G       VP
Sbjct: 716 DQSQSLNLFMAAPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAATATTPVP 775

Query: 928 VTDPNSST--HSLGIPSSCTSDTECEVCQ 954
              P   T   +  +  S  +   CE CQ
Sbjct: 776 APVPAQQTPDEADAVACSLENPESCEACQ 804


>gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 793

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/804 (38%), Positives = 439/804 (54%), Gaps = 52/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 31  LLRTLTELTADLPDTDPGRVAAAALRGRSARADEAELRDLATEAAAGLISEDPAYSRLAA 90

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +R E  +                     F   +  G +  L+ +   +F     
Sbjct: 91  RLLTIGIRAEAASQGVTS----------------FTESVVVGHREGLIADRTAEFVRLHA 134

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA   T + 
Sbjct: 135 ARLDALIDPAADDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAEDHTARS 194

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 195 VDEVAALYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 254

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 255 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 314

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V +L DL+
Sbjct: 315 WHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVPELVDLW 374

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G+EF+ AY   E +         R + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 375 GEEFDTAYRAAEAKGL-----AKRTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 429

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVR 630
              G VVHSSNLCTEI   +S  ETAVCNLGS+NL A    +    D+D+L +T+RTAV 
Sbjct: 430 AEPGHVVHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDATVRTAVT 489

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 490 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALSTRIAERI 549

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+  G   +++ +   +GV   D             +  T    W  L+
Sbjct: 550 MLAAYEASADLAERSGPLPAWEKTRTARGVLHPDHY----------DVELTWPERWAALR 599

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +R+   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+EL
Sbjct: 600 ERIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDEL 659

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+
Sbjct: 660 KRLGVWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQS 719

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A     
Sbjct: 720 QSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI----------ARAAQATVP 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 770 AQATPDPEAVACSLENPESCEACQ 793


>gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus
           sedentarius DSM 20547]
 gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus
           sedentarius DSM 20547]
          Length = 875

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/892 (37%), Positives = 478/892 (53%), Gaps = 92/892 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            + +D            P    ++++   G     +  ++   VE  C GL +V    V 
Sbjct: 14  SQPADGDQPTLEGVPTTPARTTMRVVKRSGEHEQVDVTKIVAAVERCCDGLPEVDPLRVA 73

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT---VYKK 239
           ++T   +YDG + ++L+   I ++  +   EP Y+++  R L   + +EV       +  
Sbjct: 74  TKTISGLYDGATTAELDKLAIATAAEMTATEPQYSRLAGRLLAGVIDKEVRGQGIGSFSA 133

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             +  H   Q L  +    ++ E       H S +D D VY A    +  D+ F+Y GL+
Sbjct: 134 AVRTGHE--QGLIGDETAAFVAE-------HASRLD-DAVYRAQA-AHA-DWRFDYFGLR 181

Query: 300 ILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            +YDRY L    +R  +E PQ + MRV+ GL+    E    AVEF+ LLSS  ++ S+PT
Sbjct: 182 TVYDRYLLRHPLTRAVVESPQYWLMRVSAGLSHTGEE----AVEFFELLSSLAYLPSSPT 237

Query: 358 LFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFNSGTRH Q+SSC+L   P DDL  I+    + A L+K++GG+G  ++ +R  GA I G
Sbjct: 238 LFNSGTRHTQMSSCYLIDSPQDDLDSIYERYHQVAKLSKFAGGIGLAFSRIRSRGALIRG 297

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG S G++P+L+  + +  AVNQGG+RKGA C YLE WH DVEEFL+LR NTG+D RRT
Sbjct: 298 TNGHSNGIVPWLRTLDASVAAVNQGGRRKGAACIYLEPWHPDVEEFLELRDNTGEDARRT 357

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           H++N A+WIPD FM+RV  +  W+L  PD V +L DL+G  F+ AY   E + D     V
Sbjct: 358 HNLNLAHWIPDEFMRRVEADGQWSLIDPDAVPELPDLWGPAFDAAYRAAEERGD-----V 412

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---------------QHVGVVHS 581
            R +SA  L+ +M+  L +TG  W+TFKD  N    Q               Q   VVH 
Sbjct: 413 VRTVSARYLYGRMMRTLAQTGQGWMTFKDASNRACNQTSDDQTPRVAADGTVQPAPVVHL 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------------FDYDKLASTI 625
           SNLCTEI   +S++ETAVCNLGS+NL AH   +                  D D+L ST+
Sbjct: 473 SNLCTEIIEVTSNDETAVCNLGSVNLAAHLQWSDGTTGVRPTDPAARATGIDTDRLRSTV 532

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R AV  LD VIDIN +  E+A  SN   R IGLG MG Q     L +P+ +PEA E++  
Sbjct: 533 RLAVTYLDRVIDINYYPSEQAAASNPRWRPIGLGSMGLQDVFFALRMPFDAPEAKELSTR 592

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I   A+  S ELA++ GA+ +F  +   +G    D  G          +  T    
Sbjct: 593 IAEEIQLSALERSAELAEQFGAHPAFAETRAARGQLQHDLQG----------VEPTQTER 642

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  +++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VN+ 
Sbjct: 643 WAAVRQRIADHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFMQVNTA 702

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV ELK   LW EA+   LK  +GS+  I  +P++ +++  TA+E+    LIE A+ RQ 
Sbjct: 703 LVGELKSLGLWTEAVREKLKADNGSVAGIADLPEETRRLFRTAWELPQKALIEMAAARQA 762

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV------ 919
           ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+ GV      
Sbjct: 763 YVDQSQSLNLFMESPNIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAGVRAGASW 822

Query: 920 ---DGKLNAVPVTDPNSS---------------THSLGIPSSCTSDTECEVC 953
               G   A   T P S                T    +  S  +   CE C
Sbjct: 823 GAATGAPGASQPTAPGSPGVVGGLTASEPVRTFTDEEALACSLENPEACEAC 874


>gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767]
 gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii]
          Length = 861

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/799 (34%), Positives = 435/799 (54%), Gaps = 34/799 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            +KI        +F+  +L   +E     L  + +S + ++++    + D +S  DL   
Sbjct: 6   VIKIKDKTEQYENFSKTKLLHFLENLAFELDTEYISLEEIVNKVIDGLPDLISVKDLLEL 65

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L  S  T I   P+++ +  R     L++    T      +  +++        +    +
Sbjct: 66  LAESIATKIIYHPDHSILAGRVEAVNLQKMTDYTFSSNVIRLRNYKSNKT-GRSYGVVSD 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E  K  + H+ ++D       + +   RD    Y G++ L + Y L ++    E PQ  F
Sbjct: 125 EYFKTVMEHKHVLD-------SIIDSRRDLELTYFGIKTLQNSYLLKLDNVVSETPQFMF 177

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           +RVA+G+   + +     +E Y L+S  +F+ ++PTLFNSGT +  LSSCFL  + DD +
Sbjct: 178 LRVAIGIHGDDID---SVIETYELMSQKYFIHASPTLFNSGTEYNYLSSCFLLAMEDDSI 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L ++A+++K SGG+G     +RG G++I  +NG S G++P L+V N+TA  V+Q
Sbjct: 235 DGIYKTLHKSALISKASGGIGLHVHNIRGSGSYIASSNGTSSGLVPMLRVFNNTARYVDQ 294

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   Y+E WH D+   LDL+KN G +  R  D+    WIPDLFM+RV Q+  W
Sbjct: 295 GGNKRPGAFAIYIEPWHCDIISILDLKKNHGKEEMRARDLFYGLWIPDLFMERVKQDLDW 354

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LFSPD    L D YG  F+  YE YE           R I A  LWR +L    ETG P
Sbjct: 355 SLFSPDITPGLSDCYGDAFKTLYEKYEESGK-----AIRTIKAQKLWRAILECQTETGGP 409

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---QF 616
           ++ FKD CN +S Q+++G + SSNLC EI   SS EETAVCNLGS+ L +   N+   ++
Sbjct: 410 YMLFKDACNSKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFIKNSNELEY 469

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+DKL +  +   + L+ +IDI  + IE AK SN  +R I +G+ G       L +P+ S
Sbjct: 470 DFDKLHTVTKVLAKNLNKIIDITKYPIESAKFSNMRNRPIAVGVQGLADLFLELRLPFDS 529

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  +  +  E I   A+  S+ELA + G Y +FKGS   +G+F  D            
Sbjct: 530 NQAKVLNTQIFETIYHAAVEVSIELAIKDGPYDTFKGSPISEGLFQFDLWNHKPSQLYS- 588

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WDELK + KT+G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +S
Sbjct: 589 --------DWDELKLKAKTLGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLS 640

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    +W+ +M + +   +GSI NI  IP +LK+++ T +EI    +
Sbjct: 641 GEFQVVNKYLMKDLIDLGIWNSSMKNKIILENGSIQNIPSIPKELKQLYKTVWEISQKVI 700

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           IE A+ R K+IDQ+QS+N++L +P+  KL   +  AW  GLKT  YYLR+++AT   + T
Sbjct: 701 IELAADRGKFIDQSQSMNIHLQDPTFGKLTSSHFYAWEKGLKTGMYYLRTQAATRAIQFT 760

Query: 916 LKGVDG-KLNAVPVTDPNS 933
           +   +  KL+  P  D ++
Sbjct: 761 VDLAESRKLDVQPEADMST 779


>gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           avermitilis MA-4680]
 gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptomyces avermitilis MA-4680]
          Length = 793

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/802 (38%), Positives = 437/802 (54%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 27  LLRTLTDLTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 86

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL--- 278
           R L   +  E  +                     F   I  G +  L+ +   DF     
Sbjct: 87  RLLTISIAEEAASQGVTS----------------FSASITVGHREGLVADRTADFVRLHT 130

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +    D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA  +T   
Sbjct: 131 ARLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRRVIETPQHFMLRVASGLAEDDTSHA 190

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 191 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 250

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 251 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +N  W+LFSP +V +L DL+
Sbjct: 311 WHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFSPADVPELVDLW 370

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G EF+ AY   E           + I A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 371 GDEFDAAYRKAEEAGL-----AKKTIPARDLYGRMMRTLAQTGNGWMTFKDAANRTANQT 425

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              G VVHSSNLCTEI   +   ETAVCNLGS+NL A       D+++L +T+RTAV  L
Sbjct: 426 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGRDIDWERLDATVRTAVTFL 485

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I  
Sbjct: 486 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAQALSTRIAERIML 545

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D             +  T    W  L++R
Sbjct: 546 AAYEASADLAERNGPLPAWEKTRTARGVLHPDH----------FDVELTWPERWAALRER 595

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELKQ
Sbjct: 596 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKQ 655

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GS+     +P D++ ++ TA+EI    LI+ A+ R  ++DQAQS
Sbjct: 656 LGVWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAARTPFLDQAQS 715

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           +PV    
Sbjct: 716 LNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQ-AQAQPEKTIPVQQ-- 772

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
             +    +  S  +   CE CQ
Sbjct: 773 -VSEPDAVACSLENPESCEACQ 793


>gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
          Length = 779

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/780 (33%), Positives = 417/780 (53%), Gaps = 41/780 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           +L ++  DG+    +   ++  +E  C  L    V++ +V     K +  G++  +L   
Sbjct: 2   QLHVIRRDGSRKEVHLHDIKAGIETLCFNLNKQYVNAAVVALNIMKGIRPGITTEELNVY 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
                 ++     ++A +  R L++ L  ++  +  +       H+   L  +     +E
Sbjct: 62  AADVVASMTYIHHDFAVLAGRILVDDLHNKIDASFSEVVFNLHRHK---LVSDELASVVE 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                              +   + +  D+ +++ G + L + Y L I+    E PQ   
Sbjct: 119 SH--------------GDEINEAIDHAVDYTYKFFGYKTLENGYLLKIDNQVAERPQHML 164

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+   + +    A+E Y ++S   F  ++PTLF++GT   Q+ SCFL  +  D +
Sbjct: 165 MRVALGIHGDDIQD---AIETYRMMSRKMFTHASPTLFSAGTPMAQMCSCFLLGIRSDSI 221

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L + A ++KY GGLG +   VR  G  I+ TNG + GV P ++V N+    V+Q
Sbjct: 222 DGIYETLGDCAAISKYGGGLGVNVHCVRSRGTRINSTNGVASGVEPMVRVFNNMVRHVDQ 281

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGA+  Y+E WH D+   L+L++N G +  +  D+  A W+PDLFM+RV  N  W+
Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMERVNANGVWS 341

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P++   L D YG  FE  Y  YE +         +++ A  L R ++    ETG P+
Sbjct: 342 LMCPNKCPGLSDCYGSAFEELYRKYEEEGR-----YQQQVRAQDLHRFIVETQVETGGPY 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618
           + +KD CN +S QQ++G +  SNLC EI   S +EETAVCNL SI  N        +FD+
Sbjct: 397 MLYKDACNRKSNQQNLGTIKCSNLCAEIVQYSDAEETAVCNLASIAVNSCVVVDEARFDF 456

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL    +  VR L+ +ID N + IE A+ SN  HR IG+G+ G   A  LL +PY S E
Sbjct: 457 EKLRHITKVVVRNLNKIIDRNRYPIESARMSNMKHRPIGVGIQGLADAFVLLRMPYESDE 516

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+ +  +  E I F A+ AS ELA+  G+YSSF+GS   +G+   D             +
Sbjct: 517 AMLLNRQIAETIYFGALEASCELAKTWGSYSSFQGSPASEGILQYDMW----------DV 566

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             TS   W  LK+ +K  G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+
Sbjct: 567 RPTSLWDWGTLKEDIKKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+++L +  L+   M + +  H GSI  I+ IPD +K+++ TA+E+    +IE
Sbjct: 627 FQVVNQYLIDDLIKLKLYTSEMRNAIFAHKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIE 686

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLNL++ EP+   +  I+   W  GLKT  YYLR++ A   ++ T++
Sbjct: 687 MAADRNAFIDQSQSLNLFVAEPTYALMTSIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVE 746


>gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
 gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
          Length = 802

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/808 (37%), Positives = 438/808 (54%), Gaps = 49/808 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD----LETALIFSSRTLIEKEPNYA 217
           L   + E    L D     V +   +      + ++    L      ++  LI ++P Y+
Sbjct: 29  LLRTLTELTVDLPDADPGRVAAAALRGRSSRAATAEMVAELRELATEAAAGLISEDPAYS 88

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           K+ AR L   +R E  +                     F   I  G +  L+ +   +F 
Sbjct: 89  KLAARLLAIGIRAEAASQGVT----------------TFTESIAVGHREGLVADRTAEFV 132

Query: 278 L---VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKE 332
                 L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA  +
Sbjct: 133 RVHGARLDALVDPAGDDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAEDD 192

Query: 333 TEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390
           T +        Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + 
Sbjct: 193 TPRAVDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQV 252

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   
Sbjct: 253 ARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAV 312

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L
Sbjct: 313 YLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVPEL 372

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI- 569
            DL+G+EFE AY   E           + I+A  L+ +M+  L +TG+ W+TFKD  N  
Sbjct: 373 VDLWGEEFEAAYRKAEANGLAR-----KTIAARDLYGRMMRTLAQTGNGWMTFKDAANRT 427

Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIR 626
            +     G VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L  T+R
Sbjct: 428 ANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDETVR 487

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAV  LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++   
Sbjct: 488 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRI 547

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E I   A  AS +LA+  G   +++ +   +GV   D  G          +       W
Sbjct: 548 AERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYG----------VEPAWSERW 597

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L++RV   GMRN+  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+L
Sbjct: 598 AALRERVAATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYL 657

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK+  +WD      L+  +GS+ +   IP D++ ++ TA+EI    LI+ A+ R  +
Sbjct: 658 VRDLKELGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPY 717

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           +DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           V
Sbjct: 718 LDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARAAQGQARQPETTV 777

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           PV     +T    +  S  +   CE CQ
Sbjct: 778 PVQQ---ATSEEALACSLENPESCEACQ 802


>gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
 gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
          Length = 797

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/801 (38%), Positives = 441/801 (55%), Gaps = 39/801 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 28  LLRTLTELTADLPDTDPGRVAAAALRGRSAAADEAELRSLATEAAAGLISEDPAYSRLAA 87

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +R E           AT                +        H + +D  + Y 
Sbjct: 88  RLLTLAVRDEAAGQG------ATSFSASVAVGHREGLIADRTAAFVEAHAARLDALVEYT 141

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEKR 338
             +     D  F + GL+ L+ RY L   I    +E PQ F +RVA GLA  E+ +  + 
Sbjct: 142 LAEGA---DDRFGFFGLRTLHSRYLLRHPITRQVVETPQHFMLRVACGLAADESVQAVEE 198

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 199 VASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLSKHA 258

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 259 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 318

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+W+PD FM+RV  +A W+LFSP +V +L DL+G +
Sbjct: 319 DIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFSPADVPELVDLWGDD 378

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHV 576
           F+ AY   E           + + A  L+ +M+  L +TG  W+TFKD  N   +     
Sbjct: 379 FDAAYRKAEADGLAR-----KTMPARDLYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 433

Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLD 633
           G VVHSSNLCTEI   ++  ETAVCNLGS+NL A       + D+++L  T+RTAV  LD
Sbjct: 434 GTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVLTETGEIDWERLDETVRTAVTFLD 493

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   
Sbjct: 494 RVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLKLPFDSPEAKALSTKLSERIMLA 553

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS +LA+  G   +++ +   +GV   D          +  +N   R  WD L+ RV
Sbjct: 554 AYEASCDLAERSGPLPAWEQTRTARGVLHPDHY--------DTELNWPER--WDALRARV 603

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV ELK+ 
Sbjct: 604 AESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKKL 663

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +WD      L+   GS+     IP ++++++ TA+EI    LI+ A+ R  ++DQ+QSL
Sbjct: 664 GVWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSL 723

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT       K       A PV  P +
Sbjct: 724 NLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPAT-------KIARAAQAATPVALPQA 776

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
              +  +  S  +   CE CQ
Sbjct: 777 VVDAEALACSLENPESCEACQ 797


>gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 792

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/802 (37%), Positives = 443/802 (55%), Gaps = 43/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 25  LLRTLTDLTADLPDTDPGKVAAAALRGRSAAADEAELRELATEAAAGLIAEDPAYSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL--- 278
           R L   +  E                        F   +  G +  L+ +   +F     
Sbjct: 85  RLLTVTIADEAAGQG----------------AFSFSASVAVGHREGLIADRTAEFVALHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +    D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA  ++ + 
Sbjct: 129 DRLDATIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAEDDSVRA 188

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 189 LDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 249 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+
Sbjct: 309 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLW 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G+EF+ AY   E           + + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 369 GEEFDAAYRKAEAAGLAR-----KTMPARDLYGRMMRTLAQTGNGWMTFKDASNRTANQT 423

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              G  VHSSNLCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  L
Sbjct: 424 AEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVRTAVTFL 483

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 484 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRIAERIML 543

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D          ++ +N   R  W  L++R
Sbjct: 544 AAYEASADLAERNGPLPAWEKTRTARGVLHPDHY--------DVELNWPER--WAALRER 593

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELK+
Sbjct: 594 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKK 653

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+  +GS+     +P ++++++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 654 LGVWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQS 713

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++          A  +    
Sbjct: 714 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARA---AQAAAPAAATIPVQQ 770

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           ++  +  +  S  +   CE CQ
Sbjct: 771 ATPDADALACSLENPESCEACQ 792


>gi|239929011|ref|ZP_04685964.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
          Length = 793

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/804 (37%), Positives = 444/804 (55%), Gaps = 46/804 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 25  LLRTLTELTADLPDADPGRVAAAALRGRSARADETELRELATEAAAGLISEDPAYSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 85  RLLAIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L   I    +E PQ F +RVA GLA  ++ + 
Sbjct: 129 DRLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAEDDSVRS 188

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 189 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 249 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 309 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVPELVDLW 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G+EF+  Y   E +         + + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 369 GEEFDAVYRAAEEKGLAR-----KTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 423

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVR 630
              G V+HSSNLCTEI   +   ETAVCNLGS+NL A         D+++L  T+RTAV 
Sbjct: 424 ATPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRTVRTAVT 483

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 484 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLSTRIAERI 543

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+++G   +++ +   +GV   D             ++ T    W  L+
Sbjct: 544 MLAAYEASADLAEDKGPLPAWEKTRTARGVLHPDHY----------DVDLTWPERWVALR 593

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ + G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 594 GRIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDL 653

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WDE     L+   GS+     IPDD+++++ TA+EI    LI++A+ R  ++DQA
Sbjct: 654 KRLGVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQA 713

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV  
Sbjct: 714 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAQ-AQPQAQTTVPVQQ 772

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
           P   T    +  S  +   CE CQ
Sbjct: 773 P---TPDEAVACSLENPESCEACQ 793


>gi|22788802|ref|NP_690514.1| Rr1 [Heliothis zea virus 1]
 gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1]
          Length = 939

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/784 (32%), Positives = 420/784 (53%), Gaps = 51/784 (6%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-------VSSKIVLSETYKNMYDGLSESDL 198
            I+  +G++  F+  +L   +E  C  + +       ++   ++++  K +YD +S  +L
Sbjct: 7   MIVKRNGSVERFDPSKLYARIER-CMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTLEL 65

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +T L  +  ++    P+++ + AR  ++ L +   +   +  +      +    P+Y+  
Sbjct: 66  DTLLSETCASMSTAHPDHSILAARIAMQALHKRTRSKFSETIRDLYEANI---VPQYYFD 122

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHI-NGSRIEM 316
            ++E                  L + +  +RDF    Y   + L   Y + + +G   E 
Sbjct: 123 LVQEH--------------ADTLDSAIVDDRDFQSLTYFAYKTLERTYLIKLADGKICER 168

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q  +MR A+G+  ++ E     +E YNLLS+ +++ STPTL ++ T     +SC+L  +
Sbjct: 169 VQHMYMRTALGIHGRDIE---SVIETYNLLSNRYYVHSTPTLCHAATNRSNYASCYLLEL 225

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + G+   L++ A ++K+ GG+G     +R   + IH TNG + G++P L++ N  +
Sbjct: 226 KEDSIGGVMDTLKDAATISKHCGGVGLHVHKLRCKNSTIHSTNGNASGLVPMLRMYNAMS 285

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V QG  KR GA+  YLE WH DV +F+++RKN+G +  R  D+  A W+PDLFMKRV 
Sbjct: 286 RYVTQGGNKRPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVN 345

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               W+L  PD    L D +G+EFE  Y  YE++         R++ A  LW+ ++T   
Sbjct: 346 DGGYWSLMCPDSSPGLSDCWGEEFEAKYTAYEQEGR-----YVRRVDARELWKAIVTAQV 400

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG P+I +KD  N  S Q+H+G +  SNLCTEI   +S +ETAVC L S+NL       
Sbjct: 401 ETGTPYILYKDTVNRNSNQRHLGTIKGSNLCTEIVEYASPDETAVCVLASVNLPKFVEGK 460

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            F+ + LA T+R   R L+ +ID   + I  A KSN  HR IG+G+ G+  AL ++ I Y
Sbjct: 461 VFNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNFKHRPIGIGVQGYADALAMMGIAY 520

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               ++++  +  E I   A++ S +LA+  G Y S+ GS   +G    D   +      
Sbjct: 521 ED--SMQLNRDIFETIYHAALTESCQLARVHGVYESYHGSPTSRGELHFDRYSV------ 572

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 + +  W  L+K +   G+RNS  +A  PTAT + + G ++S +P   N+Y +  
Sbjct: 573 -----HSQKCDWSSLRKDIARYGLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRT 627

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            SG+F + N  LV +L++ +LW++ M   + Y++GSI NI  IP++L++I+ T +EI   
Sbjct: 628 QSGEFQLTNVHLVRDLERLNLWNDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTK 687

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R  +IDQ+QS NLY+ EP+  ++  I+  AW  GLKT  YYLR++SAT+   
Sbjct: 688 TLIDMAADRGAYIDQSQSFNLYVAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIP 747

Query: 914 STLK 917
            T+ 
Sbjct: 748 FTVD 751


>gi|239944173|ref|ZP_04696110.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 807

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/799 (38%), Positives = 440/799 (55%), Gaps = 32/799 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 35  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 94

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           AT                +       LH   +D  +   
Sbjct: 95  RLLTLSIADEAAGQG------ATSFSASVAVGHREGLIADRTAAFVELHAKALDELVERT 148

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338
             +     D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA  E+ +    
Sbjct: 149 LAEGA---DDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALDE 205

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 206 VAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 265

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 266 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 325

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G  
Sbjct: 326 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGDA 385

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHV 576
           F+ AY   E +         + + A  L+ +M+  L +TG  W+TFKD  N   +     
Sbjct: 386 FDAAYRAAEAKGLAR-----KTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 440

Query: 577 GVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G V HSSNLCTEI   ++  ETAVCNLGS+NL A  AN   D+D+L ST+RTAV  LD V
Sbjct: 441 GRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDRV 500

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A 
Sbjct: 501 VDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAY 560

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+  G   ++  +   +GV   D          +  +N   R  WD L+ RV  
Sbjct: 561 EASCDLAERSGPLPAWSETRAARGVLHPDHY--------DTELNWPER--WDALRARVAK 610

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  +
Sbjct: 611 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGV 670

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL
Sbjct: 671 WDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 730

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++   G       +PV    S+ 
Sbjct: 731 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAS-GQASAAAPIPVQQ-ASAP 788

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  I  S  +   CE CQ
Sbjct: 789 DADAIACSLENPESCEACQ 807


>gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 810

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/802 (38%), Positives = 442/802 (55%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 44  LLRTLTDLTADLPDTDPGRVAAAALRGRHPGSDAAELRGLATDAAAGLIAEDPAYSRLAA 103

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E  +                     F   +  G    L+ +    F  ++ 
Sbjct: 104 RLLTLTIGDEARSQG----------------AVSFSASVAVGHTEGLIADRTAAFVALHS 147

Query: 282 A---NDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
           A     +  + D  F Y GL+ LY RY L   I    +E PQ F +RVA GLA  +TE+ 
Sbjct: 148 ARLDALIDLDADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAEDDTERA 207

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+G   + A L+
Sbjct: 208 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVARLS 267

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 268 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 327

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 328 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVPELVDLW 387

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 388 GDEFDAAYRKAEAAGLAR-----RTLPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 442

Query: 575 HVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
            +    VHSSNLCTEI   +   ETAVCNLGS+NL A  +    D+++L +T+RTAV  L
Sbjct: 443 ALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVRTAVTFL 502

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 503 DRVVDINFYPTEQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRIAERIML 562

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D  G+     +           W  L++R
Sbjct: 563 AAYEASADLAERHGPLPAWEKTRTARGVLHPDHYGVEQHWPER----------WAALRER 612

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV ELK+
Sbjct: 613 VATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKR 672

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GSI     +PD++++++ TA+EI    LI+ A+ R  +IDQ+QS
Sbjct: 673 LGVWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQS 732

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV    
Sbjct: 733 LNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGTAAAAPATVPVQQ-- 790

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                  +  S  +   CE CQ
Sbjct: 791 --VPQDAVACSLENPESCEACQ 810


>gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
 gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
          Length = 791

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/835 (37%), Positives = 445/835 (53%), Gaps = 55/835 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                   A   P       DG         L   +    + L       V +   +   
Sbjct: 1   MTIAPADPASATPVTATGEPDGP-----GAALLRTLTGLTADLPGADPGRVAAAALRGRS 55

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
               E++L      ++  LI ++P Y+++ AR L   +R E  +                
Sbjct: 56  ARADEAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVV------------ 103

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                F   +  G +  L+ +    F       L   +  + D  F Y GL+ LY RY L
Sbjct: 104 ----TFTDSVATGHREGLIADRTAAFVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLL 159

Query: 308 H--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTR 364
              I    +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTR
Sbjct: 160 RHPITRKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTR 219

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           H Q+SSC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G
Sbjct: 220 HAQMSSCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNG 279

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++PFLK  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+
Sbjct: 280 IVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAH 339

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPD FM+RV  +  W+LFSP +V +L DL+G+EF+ AY   E           R + A 
Sbjct: 340 WIPDEFMRRVDADGTWSLFSPADVPELTDLWGEEFDAAYRRAEEAGLAR-----RTLPAR 394

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601
            L+ +M+  L +TG+ W+TFKD  N   +     G VVHSSNLCTEI   +   ETAVCN
Sbjct: 395 ELYGRMMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCN 454

Query: 602 LGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           LGS+NL A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG
Sbjct: 455 LGSVNLGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLG 514

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            MG Q     L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +G
Sbjct: 515 AMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARG 574

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           V   D  G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV 
Sbjct: 575 VLHPDHYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVY 624

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+
Sbjct: 625 ECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPE 684

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           D++ ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKT
Sbjct: 685 DVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT 744

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TYYLRSR AT + ++  +     + A P            +  S  +   CE CQ
Sbjct: 745 TYYLRSRPATRIARAAARATTVPVQAAP--------DPEAVACSLENPESCEACQ 791


>gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
 gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
          Length = 794

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/836 (36%), Positives = 443/836 (52%), Gaps = 55/836 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
                    A   P       DG         L   +    + L       V +   +  
Sbjct: 3   HVTIAPADPASATPVTATGEPDGP-----GAALLRTLTGLTADLPGADPGRVAAAALRGR 57

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
                E++L      ++  LI ++P Y+++ AR L   +R E  +               
Sbjct: 58  SARADEAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVV----------- 106

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYF 306
                 F   +  G +  L+ +    F       L   +  + D  F Y GL+ LY RY 
Sbjct: 107 -----TFTDSVATGHREGLIADRTAAFVRLHADRLDALIDQDADDRFGYFGLRTLYSRYL 161

Query: 307 LH--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           L   I    +E PQ F +RVA GLA  +T          Y L+S   ++ S+PTLFNSGT
Sbjct: 162 LRHPITRKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGT 221

Query: 364 RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           RH Q+SSC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S 
Sbjct: 222 RHAQMSSCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSN 281

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLK  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A
Sbjct: 282 GIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLA 341

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           +WIPD FM+RV  +  W+LFSP +V +L DL+G+EF+ AY   E           R + A
Sbjct: 342 HWIPDEFMRRVDADGTWSLFSPADVPELTDLWGEEFDAAYRRAEEAGLAR-----RTLPA 396

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVC 600
             L+ +M+  L +TG+ W+TFKD  N   +     G VVHSSNLCTEI   +   ETAVC
Sbjct: 397 RELYGRMMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVC 456

Query: 601 NLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NLGS+NL A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GL
Sbjct: 457 NLGSVNLGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGL 516

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G MG Q     L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +
Sbjct: 517 GAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAK 576

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           GV   D  G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV
Sbjct: 577 GVLHPDHYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGV 626

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP
Sbjct: 627 YECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIP 686

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +D++ ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLK
Sbjct: 687 EDVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLK 746

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TTYYLRSR AT + ++  +     + A P            +  S  +   CE CQ
Sbjct: 747 TTYYLRSRPATRIARAAARATTVPVQAAP--------DPEAVACSLENPESCEACQ 794


>gi|256785294|ref|ZP_05523725.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           lividans TK24]
          Length = 791

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/835 (37%), Positives = 443/835 (53%), Gaps = 55/835 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                   A   P       DG         L   +    + L       V +   +   
Sbjct: 1   MTIAPADPASATPVTATGEPDGP-----GAALLRTLTGLTADLPGADPGRVAAAALRGRS 55

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
               E++L      ++  LI ++P Y+++ AR L   +R E  +                
Sbjct: 56  ARADEAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVV------------ 103

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                F   +  G +  L+ +    F       L   +  + D  F Y GL+ LY RY L
Sbjct: 104 ----TFTDSVATGHREGLIADRTAAFVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLL 159

Query: 308 H--INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
              I    +E PQ F +RVA GLA  +T          Y L+S   ++ S+PTLFNSGTR
Sbjct: 160 RHPITRKAVETPQHFLLRVAAGLAEDDTLRAADEVAALYGLMSRLDYLPSSPTLFNSGTR 219

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           H Q+SSC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G
Sbjct: 220 HAQMSSCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNG 279

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++PFLK  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+
Sbjct: 280 IVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAH 339

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPD FM+RV  +  W+LFSP +V +L DL+G+EF+ AY   E           R + A 
Sbjct: 340 WIPDEFMRRVDADGTWSLFSPADVPELTDLWGEEFDAAYRRAEEAGLAR-----RTLPAR 394

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601
            L+ +M+  L +TG+ W+TFKD  N   +     G VVHSSNLCTEI   +   ETAVCN
Sbjct: 395 ELYGRMMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCN 454

Query: 602 LGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           LGS+NL A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG
Sbjct: 455 LGSVNLGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLG 514

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            MG Q     L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +G
Sbjct: 515 AMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTAKG 574

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           V   D  G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV 
Sbjct: 575 VLHPDHYGVEPAWPER----------WAALRARMATTGLRNSLLLAIAPTATIASIAGVY 624

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+
Sbjct: 625 ECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPE 684

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           D++ ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKT
Sbjct: 685 DVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT 744

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TYYLRSR AT + ++  +     + A P            +  S  +   CE CQ
Sbjct: 745 TYYLRSRPATRIARAAARATTVPVQAAP--------DPEAVACSLENPESCEACQ 791


>gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
 gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
          Length = 798

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/832 (37%), Positives = 449/832 (53%), Gaps = 47/832 (5%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            + AP AP+ + +  D T        L   + E  + L D     V +   +       E
Sbjct: 1   MTIAPSAPRAESVSGDTTEGP--GAALLRTLTELTADLPDTDPGRVAAAALRGRSASADE 58

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           ++L      ++  LI ++P Y+++ AR L   +  E                        
Sbjct: 59  AELRGLATEAAAGLISEDPAYSRLAARLLTLAVADEAAGQG----------------ATS 102

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLAN-------DLKYERDFAFEYLGLQILYDRYFLH 308
           F   +  G +  L+ +   +F   + A         L    D  F + GL+ L+ RY L 
Sbjct: 103 FAESVAVGHREGLIADRTAEFVAAHAARLDALVEHALAEGADDRFGFFGLRTLHSRYLLR 162

Query: 309 --INGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
             I    IE PQ F +RVA GLA  ++ +  +     Y L+S   ++ S+PTLFNSGTRH
Sbjct: 163 HPITRQVIETPQYFMLRVACGLAEDDSVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRH 222

Query: 366 PQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSC+L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G+
Sbjct: 223 PQMSSCYLLDSPLDELDSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGI 282

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+W
Sbjct: 283 VPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHW 342

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD FM+RV  +A W+LFSP +V +L DLYG EF+ AY   E           + + A  
Sbjct: 343 IPDEFMRRVNADADWSLFSPADVPELVDLYGDEFDAAYVKAEAAGL-----AKKTMPARD 397

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNL 602
           L+ +M+  L +TG  W+TFKD  N  + Q  +   VVHSSNLCTEI   ++  ETAVCNL
Sbjct: 398 LYGRMMRTLAQTGQGWMTFKDASNRTANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNL 457

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL A  A+ + D+ +L  T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG
Sbjct: 458 GSVNLGAFVADGEMDWARLDETVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMG 517

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     L +P+ S EA  ++ +  E I   A  AS +LA+  G   ++  +   QGV  
Sbjct: 518 LQDVFFKLRLPFDSAEAKALSTKISERIMLAAYEASCDLAERSGPLPAWAETRTAQGVLH 577

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D               R     WD L+ R+   GMRNS  +AIAPTATIA+I GV + I
Sbjct: 578 PDHYET----------ERHWPERWDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECI 627

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NL+ +  +SG+F  VN +LV +LKQ  +WD      L+   GS+     IP +++
Sbjct: 628 EPQVSNLFKRETLSGEFLQVNGYLVEDLKQLGVWDAQTREALRESSGSVQGFGWIPAEIR 687

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           +++ TA+EI    LI+ A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYY
Sbjct: 688 ELYRTAWEIPQRGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYY 747

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           LRSR AT + ++          A P   P  +  +  +  S  +   CE CQ
Sbjct: 748 LRSRPATKIARAASGAAAVPAAATPAQLPQ-ALDAEALACSLENPESCEACQ 798


>gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 774

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/807 (32%), Positives = 423/807 (52%), Gaps = 50/807 (6%)

Query: 155 ISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
           ISF+  RL+  + +   GL    V   +V+ +    + + L   DL         +L  +
Sbjct: 8   ISFDEARLKRSLLKLSFGLNLKFVDIALVVEKVSLAIIENLHLQDLLNLTSEILASLSTR 67

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
             +Y+ + AR L   LR+ +  + +   ++   H            ++++G    LL  +
Sbjct: 68  HYDYSNLAARLLSNHLRKRLGDSFFANCERLAEH-----------GFVDKG----LLTIA 112

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
             + +   L   +K ERDF F+Y G   L   Y L  +   +E PQ  FMRVA+G+    
Sbjct: 113 RSNSE--QLDGSIKPERDFDFDYFGYMTLQSIYLLKKDDLILETPQFLFMRVALGIHG-- 168

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQENA 391
            E    A++ Y+L+S  +F+ ++PTLF++GT  P LSSCFL  + D D+  ++ +L + A
Sbjct: 169 -EDLSSAIQTYDLMSQGYFIHASPTLFHAGTPTPYLSSCFLMGLQDADVNSVYQSLHKIA 227

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ-GGKRKGAVCA 450
           M++  +GG+G +   +    A          G++P +KV N+TA  V Q   KR  A   
Sbjct: 228 MISNAAGGIGINVHDIPAEDACNR-------GIVPLIKVLNETARYVQQGSNKRPSAFAI 280

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH +V + L+LRKN G +  R  D+  A WIPDLFM++V +N  W LF+P     L
Sbjct: 281 YLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFNPLHAKGL 340

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +D+YG++F + Y  YE++         RKI A  LW  ++    ETG P++ +KD CN +
Sbjct: 341 NDVYGEQFNLLYAEYEKKGM-----YVRKIPAQQLWNAIVDAQIETGTPFMLYKDSCNRK 395

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           S Q ++G +  SNLC EI   SS ++ AVCNL SI L  +  + +FD++ L +++R    
Sbjct: 396 SNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYVVDGKFDFESLKNSVRIVTE 455

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VIDI+ + + +A  SN   R + +G+ G      LL IPY S EA  +  +  E I
Sbjct: 456 NLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQIFETI 515

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            + A+  S+ +A++ G Y SF+GS   +G+  +D   +  E            L W  L+
Sbjct: 516 YYSALETSMNIAKKDGPYKSFQGSPASKGLLQMDLWNVKEEDL---------TLDWKSLR 566

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +   G+RNS  +   PTA+ + I G  +S +P   N Y +   SG++ VVN +L+++L
Sbjct: 567 SDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKYLIDDL 626

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               LW +++  ++  +DGSI  I+ IP ++K ++ T +EI     I  A+ R ++IDQ+
Sbjct: 627 INLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGRFIDQS 686

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA---V 926
           QS+NLYL +P+  KL  ++  AW  GLKT  YYLR+++A+S  K ++     K +     
Sbjct: 687 QSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRDGTYNT 746

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVC 953
           P       + +L    SC  +  CE C
Sbjct: 747 PTKRQAVQSEALETTPSCQLNN-CESC 772


>gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces coelicolor A3(2)]
          Length = 791

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/835 (37%), Positives = 445/835 (53%), Gaps = 55/835 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                   A   P       DG         L   +    + L       V +   +   
Sbjct: 1   MTIAPADPASATPVTATGEPDGP-----GAALLRTLTGLTADLPGADPGRVAAAALRGRS 55

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
               E++L      ++  LI ++P Y+++ AR L   +R E  +                
Sbjct: 56  ARADEAELRELATEAAAGLISEDPVYSRLAARLLTIGIRAEAASQGVV------------ 103

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                F   +  G +  L+ +    F       L   +  + D  F Y GL+ LY RY L
Sbjct: 104 ----TFTDSVATGHREGLIADRTAAFVRLHADRLDALIDQDADDRFGYFGLRTLYSRYLL 159

Query: 308 H--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTR 364
              I    +E PQ F +RVA GLA  +T +    V   Y L+S   ++ S+PTLFNSGTR
Sbjct: 160 RHPITRKAVETPQHFLLRVAAGLAEDDTVRAADEVAALYGLMSRLDYLPSSPTLFNSGTR 219

Query: 365 HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           H Q+SSC+L   P D+L  ++  L + A L+K++GG+G  ++ VR  G+ I GTNG S G
Sbjct: 220 HAQMSSCYLLDSPKDELDSLYDRLHQVARLSKHAGGIGIAYSRVRARGSLIRGTNGHSNG 279

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++PFLK  + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG+D RRTH++N A+
Sbjct: 280 IVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAH 339

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPD FM+RV  +  W+LFSP +V +L DL+G+EF+ AY   E           R + A 
Sbjct: 340 WIPDEFMRRVDADGTWSLFSPADVPELTDLWGEEFDAAYRRAEEAGLAR-----RTLPAR 394

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601
            L+ +M+  L +TG+ W+TFKD  N   +     G VVHSSNLCTEI   +   ETAVCN
Sbjct: 395 ELYGRMMRTLAQTGNGWMTFKDTANRTANQTATPGHVVHSSNLCTEILEVTDDGETAVCN 454

Query: 602 LGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           LGS+NL A    A+   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG
Sbjct: 455 LGSVNLGAFVDPAHGDMDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLG 514

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            MG Q     L +P+ SPEA  ++    E I   A   S +LA+  G   +++ +   +G
Sbjct: 515 AMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTARG 574

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           V   D  G+     +           W  L+ R+ T G+RNS  +AIAPTATIA+I GV 
Sbjct: 575 VLHPDHYGVEPAWPER----------WAALRARMATTGLRNSMLLAIAPTATIASIAGVY 624

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           + I+P   NL+ +  +SG+F  VNS+LV++LK+  +WD      L+  +GS+     IP+
Sbjct: 625 ECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPE 684

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           D++ ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKT
Sbjct: 685 DVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT 744

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TYYLRSR AT + ++  +     + A P            +  S  +   CE CQ
Sbjct: 745 TYYLRSRPATRIARAAARATTVPVQAAP--------DPEAVACSLENPESCEACQ 791


>gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
 gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
          Length = 738

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/784 (33%), Positives = 428/784 (54%), Gaps = 53/784 (6%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           LQ+V     + + Y    + +S  ++ T +  ++ +++   P Y K++AR L+  L    
Sbjct: 3   LQNVDKNYFIDKVYNGWCEDMSSFEMITFVSETAASMMTINPEYGKLSARILICHLHEIT 62

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
             T  +K           +Y + +   I   +   ++    +  D+      + Y +D+ 
Sbjct: 63  FNTFSEK----------IIYLQKYRNIINPEIYEIVVKNREIIDDI------IDYTKDYD 106

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
             +  +  L   Y   +N   IE PQ  FMRVA+ +     +  ++  E Y+L+S+ +F 
Sbjct: 107 LTFFSITSLMKSYLFRVNDEVIERPQDIFMRVALQIHR---DNWEKVKETYDLMSNHYFT 163

Query: 353 CSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPTL+NS T   QL+SCFL   + D + GI+  L++ A+++K+SGG+G +   +R  G
Sbjct: 164 HATPTLYNSCTIRSQLASCFLLSPINDSIEGIYDTLKQCAVISKHSGGIGLNLHSIRCNG 223

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWHIDVEEFLDLRKNTG 470
           + +  T GKS+G+IP ++V N T   +NQGG R+ +  A YLE WH D+ +FLDLRKNTG
Sbjct: 224 SDLVSTGGKSRGIIPLIQVINSTKKYINQGGNRRSSSMAIYLEPWHKDIFDFLDLRKNTG 283

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  D+ TA WI DLFM+RV +N  W+LF P+E   L D++G++F   Y  YER  +
Sbjct: 284 SEDIRARDIFTALWINDLFMERVDKNEEWSLFCPNEAKGLDDVWGEDFNKLYTKYERTKN 343

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R        + A  LW+ ++    ETG P++ +KD CN  S QQ++G++ SSNLC EI  
Sbjct: 344 R------TVVKARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLGIIKSSNLCAEIIE 397

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            S   E AVCNL S+ L       +FD+++L+  ++   R L+N ID   + +E+ K+SN
Sbjct: 398 YSDKNEIAVCNLASVCLSRFVREGKFDFEELSKIVKVITRNLNNCIDSTFYPVEECKRSN 457

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  P+ S  A ++  +  E I + A+  SVELA+E G Y +
Sbjct: 458 FRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEYGPYET 517

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS   +G+F  +         ++          W+ L++++K  G+RNS  ++  PTA
Sbjct: 518 FAGSPLSKGIFHFELCKKKVPNLEK----------WNLLREKIKKHGVRNSLLVSPMPTA 567

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I   ++  +P   N+Y +   +G+F +VN +L+ +L   +LW   M + +  ++GS
Sbjct: 568 STSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYEGS 627

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I NI+ IP D+K ++ TA+E+    +I+ A+ RQ +IDQ+QSLNL++ +P+  KL  ++ 
Sbjct: 628 IQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSMHF 687

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            A+  GLKT  YYLR+R  TS  K T+   D KL    ++  N             +D  
Sbjct: 688 YAFKSGLKTGMYYLRTRPITSAIKFTV---DQKLLEKTMSSIN------------DNDEV 732

Query: 950 CEVC 953
           C+ C
Sbjct: 733 CDAC 736


>gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 767

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/831 (31%), Positives = 430/831 (51%), Gaps = 85/831 (10%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLS 183
            P+   + ++  DG+  + +  ++   ++  C               +GL  V    +++
Sbjct: 4   RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPIDSKPVYKGSRAMTGLS-VDVSKIVA 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
               ++ DG+S   L+      S ++  + P+Y  + AR  +  L+++            
Sbjct: 63  SVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQT----------- 111

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
            H ++   Y E      ++  +    H            + + Y+RD+ F+Y G + +  
Sbjct: 112 -HDKITDAYAEIAHLLSDDFKENIEKHADEYQ-------SFIDYDRDYDFDYFGFKTMER 163

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y   +N   +E PQ  ++RVA+GL   +     R  E Y+ LS   F  ++PTLFN+G 
Sbjct: 164 LYLTKVNNKIVERPQHVYLRVAIGLWGSDI---ARVKETYDALSCRKFTHASPTLFNAGF 220

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  QL+SCFL TV D L  I+  L + A L+K+ GGLG + + +RG G+ I+GTNG+S G
Sbjct: 221 KKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDG 280

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P LKV + T+   NQGG+RKG+   YLE  H DV +FL +++N G++  R  ++  A 
Sbjct: 281 IVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAV 340

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+ DLFMKRV  +A W+LF P E   L D +G E+   YE YE +     +     + A 
Sbjct: 341 WLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEAEGKAKNV-----VKAR 395

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +W  M+T + ETG P+++ KD  N ++ Q + G +  SNLC EI   +S EETAVC +G
Sbjct: 396 DVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIG 455

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L  +  N++FD+D L   ++   + LD  ID+  + I++A+ SN   R IG+G+ G 
Sbjct: 456 SVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGL 515

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q     L +P+ S EA ++  E  E I + A+ AS+ELA+  G Y +F+GS   +G+   
Sbjct: 516 QDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHGPYPTFEGSPASKGILQY 575

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               +  +          S L W  L++RVK  G+RNS   A+ PTA+ A ICG  ++ +
Sbjct: 576 HLWDVTPK----------SNLDWRGLEERVKK-GVRNSLVTALMPTASTAQICGSIEAFE 624

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   NLY +  ++G+F VVNS+LV EL +R  W E+M + +  + GSI  +  I   +K 
Sbjct: 625 PITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKA 684

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YY 902
           ++ TA+++    +I+ A+ R  ++DQ QS+NL+L +P+ K +  +    W  GLKT  YY
Sbjct: 685 VYKTAWDLSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYY 744

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LRS+ ++S                                + T D +C VC
Sbjct: 745 LRSKPSSSAI------------------------------AVTIDNDCLVC 765


>gi|182436092|ref|YP_001823811.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 804

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/799 (38%), Positives = 437/799 (54%), Gaps = 32/799 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           AT                +       LH + +D  +   
Sbjct: 92  RLLTRTIADEAAGQG------ATSFSASVAVGHREGLIADRTAAFVALHATALDQLVGQA 145

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338
             D     D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA  E+ +    
Sbjct: 146 LTDGA---DDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALDE 202

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 203 VAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 262

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 263 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 322

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G  
Sbjct: 323 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGDA 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHV 576
           F+ AY   E +         + + A  L+ +M+  L +TG  W+TFKD  N   +     
Sbjct: 383 FDAAYRAAEAKGLAR-----KTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 437

Query: 577 GVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G V HSSNLCTEI   +   ETAVCNLGS+NL A  AN   D+D+L ST+RTAV  LD V
Sbjct: 438 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDRV 497

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A 
Sbjct: 498 VDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAY 557

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+  G   ++  +   +GV   D         D           WD L+ RV  
Sbjct: 558 EASCDLAERSGPLPAWSKTRAARGVLHPDHYATELNWPDR----------WDALRARVAK 607

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  +
Sbjct: 608 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGV 667

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL
Sbjct: 668 WDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 727

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++   G       +PV    S+ 
Sbjct: 728 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAS-GQASAAAPLPVQQ-ASAP 785

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  I  S  +   CE CQ
Sbjct: 786 DADAIACSLENPESCEACQ 804


>gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis]
          Length = 855

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/799 (33%), Positives = 421/799 (52%), Gaps = 29/799 (3%)

Query: 154 LISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSE-SDLETALIFSSRTLI 210
             +FN  +L+  ++     L  + +    ++ +    + +  +E S   + +  +     
Sbjct: 15  KETFNKDKLKKFLQTLTFSLNAEYIELDTLVEKILVGIPNEPTERSKFVSYVAETVAGST 74

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVY-KKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              P+Y+ + AR  + +L R +    + +   K      +        R I   +   L+
Sbjct: 75  SAHPDYSILAARVEIRELHRIIGDATFTENLAKLRKISREVTEDATKRRKITRDLSKNLI 134

Query: 270 HESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVA 325
            +    + L     +   +   RD+ F Y G + L   Y +  N  +  E PQ  FMRVA
Sbjct: 135 SDEFYQYALKFKDKIDQAIDKSRDYNFTYFGWKTLCKSYLMKRNNEQTHETPQFMFMRVA 194

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           + +     +     +E + L+S  +F+ ++PTL NSGT +  LSSCFL  + DD + GI+
Sbjct: 195 LAIHGP-FDDIDSVLETFELMSQKYFIHASPTLCNSGTVNQYLSSCFLVGMEDDSIDGIY 253

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
             L + A+++K SGG+G   + +R  GA+I G+NG S G++P L+V N+TA  V+QG  K
Sbjct: 254 KTLHKTALISKASGGVGIHVSNIRANGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNK 313

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA C YLE WH D+ +FL LRKN G +  R  D+  A WIPDLFMKRV  N  W++FS
Sbjct: 314 RPGAFCIYLEPWHADIIDFLQLRKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFS 373

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           PDE   L D YG EF+  YE YE++         +K+ A  +W ++L    ETG P++ +
Sbjct: 374 PDEAPGLTDCYGDEFDKLYERYEKELIPR-----KKMKAQQIWSEILQSQTETGVPFMLY 428

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDY 618
           KD CN +S Q+++GV+ SSNLC EI   SS EE AVCNL S+ L  +          FD+
Sbjct: 429 KDACNKKSNQKNLGVIKSSNLCCEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDF 488

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  V+ LD  ID+  + + +A+  N  +R + +G+ G      L   P+ S +
Sbjct: 489 VKLHHVVKVLVKNLDRTIDVGKYPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVD 548

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   AI AS ELA+  G Y SF GS   +G    D   L  +    L  
Sbjct: 549 AATLNKQIFETIYHAAIEASTELAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLF- 607

Query: 739 NRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                  WD LK R+ K  G+RNS  +   PTA+ + I G ++S +P   N+Y +  +SG
Sbjct: 608 -----DDWDSLKSRITKGKGLRNSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSG 662

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT++N ++V++  Q  +W+E + + +   +GSI  IE IP+++K ++ T +E     +I
Sbjct: 663 EFTIINQYMVDDFCQLGIWNEKLKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMI 722

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +S R  +IDQ+QSLNLYL EP+  KL  ++   W  GLKT  YYLR+++A+   + TL
Sbjct: 723 DLSSDRAPFIDQSQSLNLYLREPTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTL 782

Query: 917 KGVDGKLNAVPVTDPNSST 935
              +  L+ V     +S  
Sbjct: 783 NDENTLLDKVTTKVKDSRP 801


>gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
          Length = 804

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/799 (38%), Positives = 437/799 (54%), Gaps = 32/799 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           AT                +       LH + +D  +   
Sbjct: 92  RLLTRTIADEAAGQG------ATSFSASVAVGHREGLIADRTAAFVALHATALDQLVGQA 145

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338
             D     D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA  E+ +    
Sbjct: 146 LTDGA---DDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALDE 202

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 203 VAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 262

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 263 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 322

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G  
Sbjct: 323 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGDA 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHV 576
           F+ AY   E +         + + A  L+ +M+  L +TG  W+TFKD  N   +     
Sbjct: 383 FDAAYRAAEAKGLAR-----KTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 437

Query: 577 GVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G V HSSNLCTEI   +   ETAVCNLGS+NL A  AN   D+D+L +T+RTAV  LD V
Sbjct: 438 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDATVRTAVTFLDRV 497

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A 
Sbjct: 498 VDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAY 557

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+  G   ++  +   +GV   D         D           WD L+ RV  
Sbjct: 558 EASCDLAERSGPLPAWSRTRAARGVLHPDHYATELNWPDR----------WDALRARVAK 607

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  +
Sbjct: 608 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGV 667

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL
Sbjct: 668 WDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 727

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++   G       +PV    S+ 
Sbjct: 728 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAAS-GQASAAAPLPVQQ-ASAP 785

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  I  S  +   CE CQ
Sbjct: 786 DADAIACSLENPESCEACQ 804


>gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
 gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
          Length = 878

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/805 (35%), Positives = 427/805 (53%), Gaps = 42/805 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY---KNMYDGLSESDLETALI 203
           +   +G+   F   RL   ++E    L D+SS  +         ++   L+ + L   + 
Sbjct: 5   VYEINGSN-PFQIGRLRKTLDELNREL-DISSSELELSMKAIENSLPASLTVNQLLELVA 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +    + + P++A +  R    +++R V++       +  +               +  
Sbjct: 63  ETLAQRVVQNPDFALLAGRVEAYRVQRLVVSPFSTNFSRLENGSKTES---------KIK 113

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   L+ +   +F   +  YL   ++ ERD  F Y G++ L   YFL I+    E PQ  
Sbjct: 114 MDLGLVSKDAAEFVARNSDYLDKLVRPERDMNFTYFGMRTLCKSYFLQIDNVVAETPQYL 173

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
           F+RVA+GL   L +    +R  E Y+L+S  + + S+PTLF++GT +  LSSCFL  +  
Sbjct: 174 FLRVAIGLHGKLDDKNALQRVSEIYDLMSEKYLIFSSPTLFSAGTNNNFLSSCFLMGIKE 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GIF  L   A+++K SGGLG     +R  G+ I  +NG S G++P LKV N+TA  
Sbjct: 234 DSIDGIFKTLHSAALISKGSGGLGIHVHNIRSNGSAISSSNGTSNGLVPMLKVFNNTARY 293

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   Y+E WH D+ E L+LRKN G D  R  D+  A WIPDLFMKRV  N
Sbjct: 294 VDQGGNKRPGAFAIYIEPWHGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNN 353

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+LFSP +   L D+YG+EFE  Y+ YE      E      I A  LW  +L    ET
Sbjct: 354 GKWSLFSPSKAPGLSDVYGEEFESLYQKYEE-----EDLACTTIEARKLWMHILQAQTET 408

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
           G P++ +KD CN +S Q ++G + SSNLC EI   SS EETAVCNL S+ L      N+ 
Sbjct: 409 GMPFMLYKDACNRKSNQMNLGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANEN 468

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+ KL    +   R LD VID+  + I+ AK SN  HR I +G+ G       L 
Sbjct: 469 GNVAFDFKKLHKVTKILARSLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELR 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I   AI +S+EL++E+G Y SF+GS   +G    D      +
Sbjct: 529 LPFDSAEAATLNSQIFETIYHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D           WDELK++VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y 
Sbjct: 589 FFD----------DWDELKEQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYN 638

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +LV +L+   +W++A+   +  ++GS+ NI+ IP  LKK++ T +EI
Sbjct: 639 RRVLSGEFQVVNKYLVKDLRALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEI 698

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               ++  A+ R ++IDQ+QS+N++L  P+   L   +  AW  GLKT  YYLR+++A  
Sbjct: 699 SQKHIVRLAAERGRFIDQSQSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAAR 758

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSST 935
             + T+   + +     +  P  ST
Sbjct: 759 AIQFTVDKQEIEAKLKSMVVPEVST 783


>gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 768

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/804 (32%), Positives = 431/804 (53%), Gaps = 55/804 (6%)

Query: 155 ISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
                  +   +EE  +   LQ V+   ++ +      + ++  ++      ++ ++I K
Sbjct: 13  EKLKIDMVRGQIEEYTNLLKLQHVNVDELMEKIASGWCEDMTRKEIVDYCSETAASMITK 72

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P Y  +++R ++  +    + +  +K +          Y + +   I E +   ++   
Sbjct: 73  HPEYGWISSRIIVSYIHDITMDSFVEKIK----------YIQKYQGTISEEMYKIIV--- 119

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
               +   + + + YE+DF F Y G+  L   Y + +    +E PQ  FMR A+ +   +
Sbjct: 120 ---ENAEIIDSIIDYEKDFLFNYFGILTLMKSYLIKVGEEIVERPQDVFMRTALQVHKSD 176

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENA 391
             K     E Y +LS  +F  +TPTL+NS  +  QL+SCFL T   D + G++  + + A
Sbjct: 177 FGK---VKETYEMLSRHYFTHATPTLYNSCLKEAQLASCFLITPREDSIEGVYHMINQTA 233

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCA 450
           ++ KYSGG+G +   +R  G+ +  T GKS G+IP ++V N T   +NQG +R+ G++  
Sbjct: 234 IITKYSGGIGLNLHGIRSKGSPLKRTGGKSNGIIPLIQVLNATKRYINQGAERRPGSIAI 293

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH+++ +FLDLRKNTG +  R  D+  A WI DLFM+RV  N  W+LF P +   L
Sbjct: 294 YLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNEEWSLFCPSQAVGL 353

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           ++ +G+EF   Y  YE+   R        + A  LW+ ++    ETG P++ +KD CN  
Sbjct: 354 NETWGEEFNALYCKYEKTISR------TVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           S QQH+G + SSNLC EI   SS EET+VCNLGSI+L     N +FD++ L   +R    
Sbjct: 408 SNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVKNKKFDFESLKDVVRILTI 467

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+ VID N + +E++K+SN  HR IG+G+ G      +L +P+ S EA  +  +  E +
Sbjct: 468 NLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSDEARNLNKDIFETM 527

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            + A+  S +LA++ G + S++GS   +G+F  +  G  A          ++   W+ L+
Sbjct: 528 YYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKA----------SNNWDWEGLR 577

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +R+K  G RNS  +A+ PTA  + I G +++ +P   N+Y +   +G+F +VN  L+N+L
Sbjct: 578 ERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAGEFQIVNKHLINDL 637

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW   M + +  ++GSI NI  IP  ++ I+ TA+EI    +I+ A+ RQ ++DQ+
Sbjct: 638 SELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVIDLAADRQVFVDQS 697

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T+   D KL    ++
Sbjct: 698 QSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTV---DKKLAEKTLS 754

Query: 930 DPNSSTHSLGIPSSCTSDTECEVC 953
             N +            D  C +C
Sbjct: 755 SMNDT------------DEPCSMC 766


>gi|9632159|ref|NP_048985.1| hypothetical protein PBCV1_A629R [Paramecium bursaria Chlorella
           virus 1]
 gi|2447101|gb|AAC96959.1| similar to Schizosaccharomyces ribonucleotide reductase M1 chain,
           corresponds to Swiss-Prot Accession Number P36602
           [Paramecium bursaria Chlorella virus 1]
          Length = 771

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/798 (32%), Positives = 418/798 (52%), Gaps = 55/798 (6%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKI 180
             +  +   + ++  DG+  + +  ++   ++  C               +GL  V    
Sbjct: 5   TMNRTMNRTMVVLKRDGSKENISFDKILQRIQRLCWPVNSKPVYKGSRAMTGLN-VDVSK 63

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++    ++ DG+S   L+      S ++  + P+Y  + AR  +  L+++         
Sbjct: 64  IVASVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQT-------- 115

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
               H ++   Y E     + E  K  L   +      V    D  ++        G + 
Sbjct: 116 ----HDKITDAYAE-IAHLLNEDFKENLEKHADEYQAFVDYDRDYDFDY------FGFKT 164

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           +   Y   +    +E PQ  ++RVA+GL   +  K     E Y+ LS   F  ++PTLFN
Sbjct: 165 MERLYLTKVGDKIVERPQHVYLRVAIGLWGSDIAK---VKETYDALSCRKFTHASPTLFN 221

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SG +  QL+SCFL TV D L  I+ AL + A L+K+ GGLG + + +RG GA I+GTNG+
Sbjct: 222 SGFKKAQLASCFLMTVEDSLADIYKALGDCAQLSKHGGGLGINISDIRGRGAMINGTNGE 281

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G++P LKV + T+   NQGG+RKG+   YLE  H D+ +FL +++N G++  R  ++ 
Sbjct: 282 SDGIVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLF 341

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A W+ DLFMKRV  +A W+LF P E   L D +G E+   Y  YE +     +     +
Sbjct: 342 YAVWLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYTRYEAEGKAKNV-----V 396

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  +W  M+T + ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC
Sbjct: 397 KARDVWNTMVTTIIETGQPYVANKDTVNKKNMQSNAGTIRGSNLCIEILEYTSKEETAVC 456

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            +GS+ L  +  N++FD+D L   ++   + LD  ID+  + I++A+ SN   R IG+G+
Sbjct: 457 VIGSVVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGV 516

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G Q     L +P+ SPEA ++  E  E I + A+ ASVELA+  G + +F+GS   +G+
Sbjct: 517 QGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPASKGI 576

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                  +  +          S L W  L++RVK  G+RNS   A+ PTA+ A ICG  +
Sbjct: 577 LQYHMWDVTPK----------SNLDWRGLEERVKK-GVRNSLLTALMPTASTAQICGSVE 625

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           + +P   NLY +  ++G+F VVNS+LV EL +R  W E M + +  + GSI  +  I   
Sbjct: 626 AFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPS 685

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ TA+++    +I+ A+ R  ++DQ QS+NL+L +P+ K +  +    W  GLK+ 
Sbjct: 686 VKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSL 745

Query: 901 -YYLRSRSATSVEKSTLK 917
            YYLRS+ A+S    T+ 
Sbjct: 746 QYYLRSKPASSAIAVTVD 763


>gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/798 (32%), Positives = 408/798 (51%), Gaps = 43/798 (5%)

Query: 157 FNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214
           F+ KRL  +++     L  + +    V+      +   ++  DL      S  +     P
Sbjct: 27  FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  +  R  + K+++    +      K        L  +                 S+ 
Sbjct: 87  DYGVLAGRVEMTKIQKSAENSFSANIAKIAKIAPNTLSSQLV---------------SVA 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           + +   +   + + RD+   Y  ++ L   Y L  +    E PQ  FMRV++G+  ++  
Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQDV- 186

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393
               A+E Y  +S  +F+ ++PTLFNSGT +  LSSCFL  +  D + GI+  L E A++
Sbjct: 187 --NSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
           +K SGG+G     +R  G+ I  ++G S G++P L+V N+TA  V+QG  KR GA   YL
Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ E LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L +
Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EF+  YE+YE +         + + A  LW  +L    ETG P++ +KD CN +S 
Sbjct: 365 CYGEEFKRLYESYEAKGL-----AMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G + SSNLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L
Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+  + +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I  
Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ ASVELA + G Y +F GS   +G+   D                     WDELK++
Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSDLY---------TDWDELKQK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L +
Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +LW++ M   +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ+QS
Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++  P+  KL   +  AW  GLKT  YYLR++SA+   + T+ G+     A P+   
Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSS--AATPLKRK 768

Query: 932 NSSTHSLGIPSSCTSDTE 949
               +    P +     E
Sbjct: 769 IDEVYESSFPGTGELTPE 786


>gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 799

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/807 (37%), Positives = 443/807 (54%), Gaps = 47/807 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L       V +   +  + G   ++L T    ++  LI +EP Y+K+ A
Sbjct: 26  LLRTLTKLTADLPATDPGKVAAAALRGRHPGSDAAELRTLATEAAAGLIAEEPEYSKLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E                        F   +  G +  L+ +   +F   + 
Sbjct: 86  RLLTLAIAEEAAGQG----------------AVSFSSSVAVGHREGLIADGTAEFVTSHA 129

Query: 282 A-------NDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKE 332
           A         L    D  F Y GL+ L+ RY L   I    IE PQ F +RVA GLA   
Sbjct: 130 ARLDALVDKALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDH 189

Query: 333 TEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390
           +++      E Y L S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + 
Sbjct: 190 SQRALDDVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQV 249

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C 
Sbjct: 250 ARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACV 309

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +A W+LFSP +   L
Sbjct: 310 YLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPAL 369

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI- 569
            DL+G+EF+ AY   E +         + + A  L+ +M+  L +TG+ W+TFKD  N  
Sbjct: 370 VDLWGEEFDAAYTKAEAEGL-----AVKTVPARQLYARMMRTLAQTGNGWMTFKDAANRT 424

Query: 570 RSPQQHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRT 627
            +     G V HSSNLCTEI   +   ETAVCNLGS+NL AH   + Q D+ +L +T+RT
Sbjct: 425 ANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGEDGQMDWARLDATVRT 484

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  LD V+DIN +  ++A  SN   R +GLGLMG Q     L +P+ SPEA +++ +  
Sbjct: 485 AVTFLDRVVDINFYPTQEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLSTQIS 544

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A  AS  LA+  G + ++  +   +GV   D                T    W 
Sbjct: 545 ERIMLAAYEASCALAERHGPHPAWSATRTARGVLHPDHY---------TDAVATWPERWA 595

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++R+   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV
Sbjct: 596 ALRERMAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLV 655

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+LK+  +WD      L+  +GS+ +   +P ++++++ TA+E+    LI+ A+ R  ++
Sbjct: 656 NDLKKLGVWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYL 715

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLNL++  P+  KL  +Y  AW  G+KTTYYLRSR AT + +S           VP
Sbjct: 716 DQSQSLNLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARAAAPAT---VP 772

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +    +      I  S  +   CE CQ
Sbjct: 773 IPTQQAPVDPEVIACSLENPESCEACQ 799


>gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 796

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/804 (37%), Positives = 435/804 (54%), Gaps = 51/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 33  LLRTLTELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 92

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 93  RLLTIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 136

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L   +    +E PQ F +RVA GLA  +  + 
Sbjct: 137 ERLDALVDTRADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLAEDDGARS 196

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 197 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 256

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 257 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 316

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V  L DL+
Sbjct: 317 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADVPGLVDLW 376

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G+EF+ AY   E Q         R + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 377 GEEFDAAYRAAEAQGLAR-----RTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 431

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVR 630
              G VVHSSNLCTEI   +   ETAVCNLGS+NL A    A    D+++L  T+RTAV 
Sbjct: 432 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDETVRTAVT 491

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q  L  L +P+ SPEA  ++    E I
Sbjct: 492 FLDRVVDINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALSTRIAERI 551

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D                T    W  L+
Sbjct: 552 MLAAYETSADLAERSGPLPAWEKTRTARGVLHPDHYDT----------ELTWPERWAALR 601

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+  +GMRNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VNS+LV +L
Sbjct: 602 ARIAAVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDL 661

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   IP+D+++++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 662 KRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQA 721

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +              VPV  
Sbjct: 722 QSLNLFLETPTIGKLSSMYVHAWKQGLKTTYYLRSRPATRI------ARAAARTTVPV-- 773

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             +      +  S  +   CE CQ
Sbjct: 774 -QAGPDPEAVACSLENPESCEACQ 796


>gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 896

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/835 (38%), Positives = 473/835 (56%), Gaps = 29/835 (3%)

Query: 102 VECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP--------KLKIMMDDGT 153
           VE   M +  + +       R+ R+  R A++ S   A             + ++  +G 
Sbjct: 18  VE---MSAPRYIVVER----RDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGE 70

Query: 154 LISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
              +++ ++ + +E A +GL +       + SE    ++DG++   L+ A+I  +   ++
Sbjct: 71  REPYDANKINLAIEHAAAGLDENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVK 130

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
            +P +  V AR LL+ + + VL   Y       + E+  L+  +F  YIE GV   LL  
Sbjct: 131 DDPAFDIVAARLLLKIIYKRVLGD-YASGTDGDNAELVELHARHFRGYIERGVSETLLDS 189

Query: 272 SMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA 329
                FDL  LA  L   RD   +Y+G+  L +RY +   NG  +E+PQ F+MR+AMGL+
Sbjct: 190 RFTGLFDLDRLAGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYFWMRIAMGLS 249

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L ET+    A+ FY+ +S   ++ +  TL N+GT +PQLS+CF+  + DD+  I  ++++
Sbjct: 250 LNETDPTSHAIAFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDIEHIAKSVRD 309

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L K +GG+G   T +R  G+ I   N  S G IPF+   +    AV++GGK+ GA+C
Sbjct: 310 VMWLTKGTGGIGLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALC 369

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            Y+E WH+D  EFLDLR+N+GD  RRT   NTA W  D FMKRV  +  W LF P EV+D
Sbjct: 370 FYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWYLFDPLEVAD 429

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L++LYGK F   Y  Y   A+ GE+++F+KISA A ++ +L  L  T HPW+T+KD  N 
Sbjct: 430 LNELYGKAFSERYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPWLTWKDTINN 489

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLAS 623
           R+   + G +H SNLCTEITL    +  +VCNL SINL  H  +       + D+ +L  
Sbjct: 490 RALNNNTGAIHLSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGLEMDWARLEE 549

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + R AVR LDN+IDI   ++ +A  SN  +RAIGLG+MGF   +  L   Y S EA  + 
Sbjct: 550 SARQAVRQLDNLIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSYESEEAYALI 609

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTS 742
           DE ME +S+ AI  S +LAQERGAY +F+GS W QG+ P DSI L    R   + ++RT 
Sbjct: 610 DEIMEHVSYAAIDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRGIPITVDRTI 669

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           RL WD L+++VK  GMRN+  MAIAPTA+I  + G +   DP +  ++ +S  SG F  V
Sbjct: 670 RLDWDRLREKVKG-GMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRSTSSGKFLEV 728

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV  L++R LW E     +    G I  I  IPD++K    T+F++ P   IE A+R
Sbjct: 729 NRNLVEALQERGLW-EETRESILRSQGDIQGIAAIPDEIKAAFKTSFQLSPHAFIEVAAR 787

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            QKWIDQA S N+YL+      +  IY  AW  G+KTTYYL  +     E+ST+K
Sbjct: 788 AQKWIDQAISRNMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQSTVK 842



 Score = 45.5 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKG----VQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
             ++   +G E      A       +G    + V+KRNG    +D +KI+ AI  A   +
Sbjct: 31  RDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGEREPYDANKINLAIEHAAAGL 90

Query: 58  EGKGASRSIRVQDI---------IKNLTEQTVTRLLQHNKSALIVHI 95
           +      +    ++          + L E  +   LQ+ K      I
Sbjct: 91  DENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVKDDPAFDI 137


>gi|282861025|ref|ZP_06270090.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
 gi|282563683|gb|EFB69220.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
          Length = 803

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/802 (38%), Positives = 438/802 (54%), Gaps = 39/802 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTT---VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           R L   +  E        +       H E   L  +    ++E+       H  ++D  +
Sbjct: 92  RLLTLTIADEAAGQGATSFSASVAVGHRE--GLIADRTAAFVEQ-------HAQVLDALV 142

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE 336
                D     D  F Y GL+ L+ RY L    +R  IE PQ F +RVA GLA  E+ + 
Sbjct: 143 ERTLADGA---DDRFGYFGLRTLHSRYLLRHPHTRQVIETPQHFMLRVAAGLAEDESVRA 199

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
           +  V   Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 200 RDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 259

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 260 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 319

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 320 WHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELTDLW 379

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G  F+ AY   E +         + + A  L+ +M+  L +TG  W+TFKD  N   +  
Sbjct: 380 GDAFDAAYRAAEARGLAR-----KTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQT 434

Query: 574 QHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              G V HSSNLCTEI   +   ETAVCNLGS+NL A  +    D+++L +T+RTAV  L
Sbjct: 435 AEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGSIDWERLDATVRTAVTFL 494

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++    E I  
Sbjct: 495 DRVVDINFYPTEQAGTSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTRISERIML 554

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   ++  +   +GV   D             +N   R  WD L+ R
Sbjct: 555 AAYEASCDLAERSGPLPAWSETRAARGVLHPDHYA--------TELNWPER--WDALRAR 604

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV ELK+
Sbjct: 605 IAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKK 664

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 665 LGVWDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQS 724

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +            +A       
Sbjct: 725 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI---ARAASGRTASAALPAQQA 781

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +  +  I  S  +   CE CQ
Sbjct: 782 QAPDADAIACSLENPESCEACQ 803


>gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/632 (40%), Positives = 379/632 (59%), Gaps = 22/632 (3%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            + L   Y L ING   E PQ   MRV++G+  ++ +    A+E YNLLS   F  ++PT
Sbjct: 67  FKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDA---AIETYNLLSERWFTHASPT 123

Query: 358 LFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFN+GT  PQLSSCFL ++  D + GI+  L++ A+++K +GG+G   + +R  G++I G
Sbjct: 124 LFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAG 183

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 184 TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       
Sbjct: 244 ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR----- 298

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 299 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 358

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 359 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHR 418

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS
Sbjct: 419 PIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGS 478

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +            T    W  LK+++   G+RNS  +A  PTA+ A 
Sbjct: 479 PVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQ 528

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I
Sbjct: 529 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSI 588

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 589 PEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 648

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925
            GLKT  YYLR+R A +  + TL     K   
Sbjct: 649 QGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 680


>gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 796

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/826 (37%), Positives = 443/826 (53%), Gaps = 66/826 (7%)

Query: 154 LISFNSK----RLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSES---DLETALIFS 205
               +       L   +    + L D     V +   +     G S     +L      +
Sbjct: 12  TTPVDEDGPGAALLRTLTALTADLPDADPGRVAAAALRGRSARGASAEMIAELRELATEA 71

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  LI ++P Y+++ AR L   +  E  +                     F   +  G +
Sbjct: 72  AAGLISEDPAYSRLAARLLTVSIAAEAASQGVTS----------------FTGSVAVGHR 115

Query: 266 ARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAF 320
             L+ +   +F       L   +  E D  F Y GL+ LY RY L   I    IE PQ F
Sbjct: 116 EGLIADRTAEFVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHF 175

Query: 321 FMRVAMGLALK---ETEKEKRAVEF----YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            +RVA GLA     ++E    A++     Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L
Sbjct: 176 MLRVASGLADDTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYL 235

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  +
Sbjct: 236 LDSPKDELDSIYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLD 295

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+R
Sbjct: 296 ASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRR 355

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A W+LFSP +V +L DL+G+EF+ AY   E +         R I A  L+ +M+  
Sbjct: 356 VNADAEWSLFSPADVPELVDLWGEEFDAAYRKAEAEGLAR-----RTIPARDLYGRMMRT 410

Query: 553 LFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           L +TG+ W+TFKD  N  + Q  +    VHSSNLCTEI   +   ETAVCNLGS+NL A 
Sbjct: 411 LAQTGNGWMTFKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAF 470

Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q    
Sbjct: 471 VDTTSGDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFF 530

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA  ++    E I   A  AS +LA+  G   +++ +   QGV   D    
Sbjct: 531 KLRLPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHY-- 588

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                   A +      W  L++R+   G+RNS  +AIAPTATIA+I GV + I+P   N
Sbjct: 589 --------ATDLAWPERWAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSN 640

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+ +  +SG+F  VNS+LV ELK+  +WD      L+  +GS+     IP+D++ ++ TA
Sbjct: 641 LFKRETLSGEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTA 700

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A
Sbjct: 701 WEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPA 760

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T +              VPV  P        +  S  +   CE CQ
Sbjct: 761 TRI-------ARAAQATVPVQQPAPED---AVACSLENPESCEACQ 796


>gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain
           [Streptomyces microflavus]
          Length = 793

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/804 (37%), Positives = 438/804 (54%), Gaps = 49/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L  I+ E  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 28  LLRILTELTADLPDTDPGRVAAAALRGRHPGSDTAELRELATEAAAGLIAEDPAYSRLAA 87

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL--- 278
           R L   +  E                        F   +  G +  L+ E   +F     
Sbjct: 88  RLLTLTIAEEAAGQG----------------AVSFSESVATGHREGLIAERTAEFAALHA 131

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L + +    D  F Y GL+ LY RY L   I    IE PQ F + VA GLA  ++ + 
Sbjct: 132 DRLDSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAEDDSVRA 191

Query: 337 -KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 192 LDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 251

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 252 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 311

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DLY
Sbjct: 312 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLY 371

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQ 573
           G EF+ AY   E +         + + A  L+ +M+  L +TG+ W+TFKD  N   +  
Sbjct: 372 GAEFDAAYVAAEAKGLAR-----KTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 426

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVR 630
              G VVHSSNLCTEI   +   ETAVCNLGS+ L A    A+ + D+++L +T+RTAV 
Sbjct: 427 AEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDATVRTAVT 486

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I
Sbjct: 487 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRISERI 546

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+  G   ++  +   +GV   D             +  T    W  L+
Sbjct: 547 MLAAYEASADLAERNGPLPAWDKTRTARGVLHHDHY----------DVELTWPERWAALR 596

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+EL
Sbjct: 597 ARIAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDEL 656

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   +P + + ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 657 KRLGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQA 716

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT               A PV  
Sbjct: 717 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATR-------IARAARAAAPVPA 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
            + +  +  I  S  +   CE CQ
Sbjct: 770 QSQAPDADAIACSLENPESCEACQ 793


>gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 761

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 433/817 (52%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +  +L   +   C  L    V  + V  +  K++ D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSPSKLHNRIHRLCHDLNSQFVHPRAVSLKVIKSLSDHTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K  +Y  +  R L+  + + V  +  K  Q+   H +              
Sbjct: 61  ASVAATLTYKHYDYDMLAGRLLVTNMHKYVDESFTKVVQRLHKHNL-------------- 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   LL  ++    ++    ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 107 -VSDELLLVTIKHSKIIE--ENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   + +    A++ Y  LS+  +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDIDN---AIKSYKFLSTKMYTHASPTMFAAGTPTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    VNQG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVNQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FM+RV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L++ +G EFE  Y++YE +    +     ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPELNNTFGDEFEYWYKHYEDKGQFRD-----QMPAVTLMRTIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N  FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIINGTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            S ++  V  L+ +ID N + +E AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HSVVKHVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS++LA +   YS+F GS   QG+   D    +           T
Sbjct: 516 LNKQISETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L   +L+  +M   +  + GSI +I+ IPD++KK++ T +E    +  ++I+
Sbjct: 626 VNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWECWHNNGKFMID 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+ +P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQFTV- 744

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 745 ------------APNLE---------CTKNSDCASCQ 760


>gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
 gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
          Length = 790

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/810 (37%), Positives = 436/810 (53%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLALAIVEEAAGQG----------------ASGFAASVAVGHREGLIGDRT 118

Query: 274 MDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL 328
            +F   +   L   +    D  F Y GL+ LY RY L   I    +E PQ F +RVA GL
Sbjct: 119 AEFVAAHAARLDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178

Query: 329 ALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E +         + I A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEAKGLAR-----KTIPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N   +     G VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  AS +LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRI---ARAAGSPAAE 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           A P+    S   +  I  S  +   CE CQ
Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790


>gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus]
 gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot
           syndrome virus]
 gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1)
           [shrimp white spot syndrome virus]
 gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus]
 gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus]
          Length = 848

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/857 (30%), Positives = 426/857 (49%), Gaps = 70/857 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197
           I   +GT    + +++   +E AC              ++ + + S     +   +S  +
Sbjct: 10  ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--LTTVYKKPQKATHHEMQCLYPEY 255
           ++  L   ++T I   P++ K+  RF+   + +      +     QK  H          
Sbjct: 70  MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNSFSATTQKLRHAIHPG----- 124

Query: 256 FCRYIEEGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH---- 308
                  G  A +++++  +    +   L   + Y+ D+ F   GL+ L   Y +     
Sbjct: 125 ------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSP 178

Query: 309 -INGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
                RI  E PQ   MRVA+G+   +    K  +E Y+L+S  +F  ++PTLFN GT  
Sbjct: 179 TDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCGTVT 235

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQLSSCFL  +  D + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G   G+
Sbjct: 236 PQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGL 295

Query: 425 IPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + FL++ N +   V+QG  KR+GA   Y+  WH+DV++F+D RKN G++  RT D+  A 
Sbjct: 296 MAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLFPAI 355

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+ DLFM+RV     W+L  P E   L D++G+EF+  YE YE +    E+     + A 
Sbjct: 356 WVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----VKAR 410

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           AL+ ++ +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVCNL 
Sbjct: 411 ALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLA 470

Query: 604 SINLLAHFA-------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           SI +                DY ++   ++   R LD VID+N + ++K + SN   R +
Sbjct: 471 SIAVNKFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPM 530

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG+ G       L IP+ S EA  I     E I + A+ AS E+A+E+   Y  F+GS 
Sbjct: 531 GLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSP 590

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+F  D      + RD    +      W++L++ +   G+ NS  +A  PTA+ A I
Sbjct: 591 LSKGIFQFDMGKENIKNRDIYFNSLPIH-DWEQLRRDIMKYGVHNSMFVAPMPTASTAQI 649

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S+S +P   N+Y ++ +SG F VVN +++ EL +   W+      +    GSI  + 
Sbjct: 650 LGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLP 709

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            IP   K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+  +   AW  
Sbjct: 710 NIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEK 769

Query: 896 GLKTTYYLRSRSATSVEKSTLKG----VDGKLNAVPVTDPNSST---------------H 936
           G+KT YYLR++ A    + T+         K    PV   ++                  
Sbjct: 770 GIKTLYYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDP 829

Query: 937 SLGIPSSCTSDTECEVC 953
           +  +  S  +   CE+C
Sbjct: 830 AAALLCSINNPGACEMC 846


>gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 834

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/787 (39%), Positives = 469/787 (59%), Gaps = 14/787 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG+   +++ R+ + +E+A  GL +       + SE    ++DG++   L+ A
Sbjct: 2   SITVVKRDGSKEPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL             E++ L+ E+F R I+
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYSSP------EELKRLHAEHFARNIQ 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I+A   ++ +L  L  T HP
Sbjct: 356 YLFDPLEVSDLNELYGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ 
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+
Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +
Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           NRT+RL WD L+ +VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG 
Sbjct: 596 NRTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E
Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K 
Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK- 772

Query: 919 VDGKLNA 925
           VD   +A
Sbjct: 773 VDKSQDA 779



 Score = 41.7 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G    +D ++I+ AI     A +G   +    V  I   L       +    
Sbjct: 2   SITVVKRDGSKEPYDANRINLAIE---DATQGLDENIGW-VTQIASELEITLFDGITTQQ 57

Query: 88  KSALIVHIEDIQ--------DQV-ECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               ++ +  +Q        D V    L+++ + ++  +   Y       R    H   +
Sbjct: 58  LDEAVIQV-ALQNVKDDPAFDTVAARLLLKTIYKRVLGD---YSSPEELKRLHAEHFARN 113

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-----------------QDVSSKIV 181
                  ++++D   +  F+ +RL   +E A   L                 ++  +  V
Sbjct: 114 IQ-RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEV 172

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
               +  +  GL+ ++       ++    EK      + A   L  
Sbjct: 173 PQYFWMRIAMGLTLNE--QNPTETAIAFYEKMSKLEYLAAGSTLVN 216


>gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/798 (32%), Positives = 407/798 (51%), Gaps = 43/798 (5%)

Query: 157 FNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214
           F+ KRL  +++     L  + +    V+      +   ++  DL      S  +     P
Sbjct: 27  FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  +  R  + K+++           K        L  +                 S+ 
Sbjct: 87  DYGVLAGRVEMTKIQKLAENLFSANIAKIAKIAPNTLSSQLV---------------SVA 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           + +   +   + + RD+   Y  ++ L   Y L  +    E PQ  FMRV++G+  ++  
Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQDV- 186

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393
               A+E Y  +S  +F+ ++PTLFNSGT +  LSSCFL  +  D + GI+  L E A++
Sbjct: 187 --NSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
           +K SGG+G     +R  G+ I  ++G S G++P L+V N+TA  V+QG  KR GA   YL
Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ E LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L +
Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EF+  YE+YE +         + + A  LW  +L    ETG P++ +KD CN +S 
Sbjct: 365 CYGEEFKRLYESYEAKGL-----AMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G + SSNLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L
Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+  + +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I  
Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ ASVELA + G Y +F GS   +G+   D                     WDELK++
Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSDLY---------TDWDELKQK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L +
Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +LW++ M   +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ QS
Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++  P+  KL   +  AW  GLKT  YYLR++SA+   + T+ G+     A P+   
Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSS--AATPLKRK 768

Query: 932 NSSTHSLGIPSSCTSDTE 949
               + L  P +     E
Sbjct: 769 IDEVYELSFPGTGELTPE 786


>gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides
           posadasii str. Silveira]
          Length = 643

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/673 (35%), Positives = 367/673 (54%), Gaps = 40/673 (5%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR  +  L ++  
Sbjct: 2   EHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNLHKQT- 60

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL-----VYLANDLKYE 288
                  +K     +  LY      YI           S   +++       L + + Y+
Sbjct: 61  -------KKQFSSVIDDLY-----HYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYD 108

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RDF ++Y G + L   Y L ING   E PQ   MRVA+G+  ++ EK   A+E YNL+S 
Sbjct: 109 RDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AIETYNLMSQ 165

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L+  A+++K +GG+G +   +
Sbjct: 166 KFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGGIGLNVHRI 225

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G++I GTNG S G+IP L+V N+TA  V+QG  KR GA   YLE WH D+ EFLDLR
Sbjct: 226 RATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHSDIFEFLDLR 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG EFE  YE YE
Sbjct: 286 KNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGDEFEALYEQYE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++         + I A  LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCT
Sbjct: 346 KEGRGR-----KTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIRSSNLCT 400

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           EI   +S +E AVCNL S+ L  +      ++D+ KL    +  VR L+ +ID N + + 
Sbjct: 401 EIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNKIIDGNHYPVP 460

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A++AS ++A+ 
Sbjct: 461 EARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKV 520

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G Y +++GS   QGV   D   +            T    WD LK+ +   G+RNS  +
Sbjct: 521 DGPYETYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIAKHGVRNSLLV 570

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW + M + +
Sbjct: 571 APMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRI 630

Query: 825 KYHDGSIGNIERI 837
               GSI +I  I
Sbjct: 631 IAEGGSIQSIPNI 643


>gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 834

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/787 (39%), Positives = 468/787 (59%), Gaps = 14/787 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201
            + ++  DGT   +++ R+ + +E+A  GL +       + SE    ++DG++   L+ A
Sbjct: 2   SITVVKRDGTREPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL             E++ L+ E+F R I+
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYSSP------EELKRLHAEHFARNIQ 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I A   ++ +L  L  T HP
Sbjct: 356 FLFDPLEVSDLNELYGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ 
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+
Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +
Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           NRT+RL WD L+ +VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG 
Sbjct: 596 NRTTRLDWDALRAKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E
Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K 
Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVK- 772

Query: 919 VDGKLNA 925
           VD   +A
Sbjct: 773 VDKSQDA 779



 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G    +D ++I+ AI     A +G   +    V  I   L       +    
Sbjct: 2   SITVVKRDGTREPYDANRINLAIE---DATQGLDENIGW-VTQIASELEITLFDGITTQQ 57

Query: 88  KSALIVHIEDIQ--------DQV-ECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               ++ +  +Q        D V    L+++ + ++  +   Y       R    H   +
Sbjct: 58  LDEAVIQV-ALQNVKDDPAFDTVAARLLLKTIYKRVLGD---YSSPEELKRLHAEHFARN 113

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-----------------QDVSSKIV 181
                  ++++D   +  F+ +RL   +E A   L                 ++  +  V
Sbjct: 114 IQ-RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEV 172

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK 227
               +  +  GL+ ++       ++    EK      + A   L  
Sbjct: 173 PQYFWMRIAMGLTLNE--QNPTETAIAFYEKMSKLEYLAAGSTLVN 216


>gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           flavogriseus ATCC 33331]
          Length = 797

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/809 (37%), Positives = 437/809 (54%), Gaps = 33/809 (4%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
           G         L   +    + L D     V +   +       E++L +    ++  LI 
Sbjct: 16  GRTTDAPGTALLRTLTGLTADLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLIS 75

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           ++P+Y+++ AR L   +  E           A                 +   +   LH 
Sbjct: 76  EDPSYSRLAARLLTRAVADEAAGQG------AVSFSASVAVGHREGLIADRTAEFVTLHA 129

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLA 329
           + +D  +     D     D  F Y GL+ L+ RY L         E PQ F +RVA GLA
Sbjct: 130 AALDALVDRALADGA---DDRFGYFGLRTLHSRYLLRHPLTRQVTETPQHFMLRVAAGLA 186

Query: 330 LKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL 387
              +E+  +     Y L++   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+   
Sbjct: 187 EDTSERALEEVAALYGLMNRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPMDELDSIYDRY 246

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA
Sbjct: 247 HQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGA 306

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP + 
Sbjct: 307 AAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWSLFSPADA 366

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            +L DL+G EF+ AY   E +         R + A  L+ +M+  L +TG  W+TFKD  
Sbjct: 367 PELVDLWGDEFDAAYRAAEAKGLAR-----RTLPARELYGRMMRTLAQTGQGWMTFKDAS 421

Query: 568 NI-RSPQQHVGVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
           N   +     G V HSSNLCTEI   +   ETAVCNLGS+NL A  A    D+++L +T+
Sbjct: 422 NRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVAEGTIDWERLDATV 481

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++ +
Sbjct: 482 RTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTK 541

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I   A  AS +LA+  G   ++  +   +GV   D          +  ++   R  
Sbjct: 542 ISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHY--------DTELHWPER-- 591

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++
Sbjct: 592 WDALRARVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 651

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV+ELK+  +WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  
Sbjct: 652 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 711

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A
Sbjct: 712 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI---ARAASGQAPAA 768

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             V    S+  +  +  S  +   CE CQ
Sbjct: 769 ATVPVQASAPDADALACSLENPESCEACQ 797


>gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actG]
 gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actF]
          Length = 767

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/800 (37%), Positives = 435/800 (54%), Gaps = 43/800 (5%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
             + E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR 
Sbjct: 2   RTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISEDPAYSRLAARL 61

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
           L   +  E                        F   +  G +  L+ +   +F   +   
Sbjct: 62  LALAIVEEAAGQG----------------ASGFAASVAVGHREGLIGDRTAEFVAAHAAR 105

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET-EKEK 337
           L   +    D  F Y GL+ LY RY L   I    +E PQ F +RVA GLA  ++     
Sbjct: 106 LDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVD 165

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396
                Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K+
Sbjct: 166 EVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKH 225

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH
Sbjct: 226 AGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWH 285

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+
Sbjct: 286 SDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGE 345

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQH 575
           EFE AY   E +         + I A  L+ +M+  L +TG  W+TFKD  N   +    
Sbjct: 346 EFEAAYRAAEAKGLAR-----KTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAE 400

Query: 576 VG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T+RTAV  LD 
Sbjct: 401 PGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDR 460

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++    E I   A
Sbjct: 461 VVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAA 520

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA++ G   +++ +   +GV   D             + RT    W+ L+ R+ 
Sbjct: 521 YEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPERWEALRARIA 570

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  
Sbjct: 571 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 630

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R  ++DQ+QSLN
Sbjct: 631 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 690

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A P+    S 
Sbjct: 691 LFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRI---ARAAGSPAAEAAPIPVQQSV 747

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +  I  S  +   CE CQ
Sbjct: 748 PDAEAIACSLENPESCEACQ 767


>gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 771

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/804 (38%), Positives = 452/804 (56%), Gaps = 53/804 (6%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
              +  +V    SGL DV ++ V        + G +E++L    +  + +L+  EP Y++
Sbjct: 13  IDHVVQVVRRLASGLADVEAETVSGPVVAGNWPGATEAELRLRAVEVAASLVATEPGYSR 72

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276
           + AR L E +  EV  +      +A                   G +A L+ + + +F  
Sbjct: 73  LAARLLSEHIGDEVRLSDVGCFSEAMSA----------------GYRAGLISDGLWEFVS 116

Query: 277 -DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
            +   L   +    D  FEY G++ +YDRY L    +R+  E PQ FFMRVA GL    +
Sbjct: 117 SNAPKLDALVDDGADDRFEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGL----S 172

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAM 392
           E      E Y LLS+  ++ S+PTLFN+GTR  QLSSCFL   P D+L  I+    + A 
Sbjct: 173 ETVSDVTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQAAR 232

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+KY+GG+G  W+ +R  G+ I GTNG S G++P+L+  + +  AVNQGG+RKGA C YL
Sbjct: 233 LSKYAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYL 292

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
            TWH D+EEFL+LR NTG + RRTH++N ANWIPD FM+RV  +  W+LF P +V +L D
Sbjct: 293 ATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPELVD 352

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           L+G+EFE AY + E           R +SA  L+ +M+  L +TG+ W+TF D  N    
Sbjct: 353 LWGEEFEKAYRDAEAAGK-----AARVVSARDLYGRMMRTLAQTGNGWMTFADISNRTCN 407

Query: 573 QQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           Q  V   VVH SNLCTEI   +S  ETAVCNLGS+NL AH  +  FD+++LA ++RTAV 
Sbjct: 408 QTAVPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRTAVT 467

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD  ID+  +   +A+K+N   R IGLGLMG       L +P+ S EA E+++   E I
Sbjct: 468 FLDRSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRISETI 527

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  A   S +LA   GA+ S+  +   +GV  +D     A    +          W  ++
Sbjct: 528 ALAAYETSADLAARLGAHPSYDDTRAARGVLHVDHFADAAVTDPDA---------WQRVR 578

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + V   G+RNS  +AIAPTATIA I G S+  +P   N++ +  +SG+F  VN +L+ +L
Sbjct: 579 ELVAANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADL 638

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           KQR LW+E +   +   +GSI +I  IP +L++++ TA+E+    LI+ A+ R  +IDQ+
Sbjct: 639 KQRGLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQS 698

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR AT + ++T+            + 
Sbjct: 699 QSLNLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPATRINQTTV-----------ASA 747

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
           P     +  I  S  +   CE CQ
Sbjct: 748 PEVDAEAEAIACSLENPETCEACQ 771


>gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot
           syndrome virus]
          Length = 848

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/857 (30%), Positives = 426/857 (49%), Gaps = 70/857 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197
           I   +GT    + +++   +E AC              ++ + + S     +   +S  +
Sbjct: 10  ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--LTTVYKKPQKATHHEMQCLYPEY 255
           ++  L   ++T I   P++ K+  RF+   + +      +     QK  H          
Sbjct: 70  MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNSFSATTQKLRHAIHPG----- 124

Query: 256 FCRYIEEGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH---- 308
                  G  A +++++  +    +   L   + Y+ D+ F   GL+ L   Y +     
Sbjct: 125 ------TGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSP 178

Query: 309 -INGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
                RI  E PQ   MRVA+G+   +    K  +E Y+L+S  +F  ++PTLFN GT  
Sbjct: 179 TDRKKRILVERPQDMIMRVAVGIHGSDI---KSVIETYDLMSRHYFTHASPTLFNCGTVT 235

Query: 366 PQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQLSSCFL  +  D + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G   G+
Sbjct: 236 PQLSSCFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGL 295

Query: 425 IPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + FL++ N +   V+QG  KR+GA   Y+  WH+DV++F+D RKN G++  RT D+  A 
Sbjct: 296 MAFLQIFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLLPAI 355

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+ DLFM+RV     W+L  P E   L D++G+EF+  YE YE +    E+     + A 
Sbjct: 356 WVSDLFMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEAEGKGKEV-----VKAR 410

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           AL+ ++ +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVCNL 
Sbjct: 411 ALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLA 470

Query: 604 SINLLAHFA-------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           SI +                DY ++   ++   R LD VID+N + ++K + SN   R +
Sbjct: 471 SIAVNKFVKYFPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPM 530

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG+ G       L IP+ S EA  I     E I + A+ AS E+A+E+   Y  F+GS 
Sbjct: 531 GLGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSP 590

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +G+F  D      + RD    +      W++L++ +   G+ NS  +A  PTA+ A I
Sbjct: 591 LSKGIFQFDMGKENIKNRDIYFNSLPIH-DWEQLRRDIMKYGVHNSMFVAPMPTASTAQI 649

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S+S +P   N+Y ++ +SG F VVN +++ EL +   W+      +    GSI  + 
Sbjct: 650 LGNSESFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLP 709

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            IP   K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+  +   AW  
Sbjct: 710 NIPKSTKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEK 769

Query: 896 GLKTTYYLRSRSATSVEKSTLKG----VDGKLNAVPVTDPNSST---------------H 936
           G+KT YYLR++ A    + T+         K    PV   ++                  
Sbjct: 770 GIKTLYYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDP 829

Query: 937 SLGIPSSCTSDTECEVC 953
           +  +  S  +   CE+C
Sbjct: 830 AAALLCSINNPGACEMC 846


>gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 761

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/817 (32%), Positives = 430/817 (52%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +              
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNL-------------- 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   LL  ++    ++    ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 107 -VSDELLSVTIKHSKIIE--ENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   + +    A++ Y  LS   +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDID---SAIKSYKFLSRKMYTHASPTMFAAGTLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + A+++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAIISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE +    E     ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV- 744

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 745 ------------SPNLE---------CTKNSDCASCQ 760


>gi|22549569|ref|NP_689342.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 761

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/817 (32%), Positives = 430/817 (52%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +              
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNL-------------- 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   LL  ++    ++    ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 107 -VSDELLSVTIKHSKIIE--ENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   + +    A++ Y  LS   +  ++PT+F +G+  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDID---SAIKSYKFLSRKMYTHASPTMFAAGSLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE +    E     ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV- 744

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        PN           CT +++C  CQ
Sbjct: 745 ------------SPNLE---------CTKNSDCASCQ 760


>gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 790

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/810 (37%), Positives = 439/810 (54%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLALAIVEEAAGQG----------------ASGFAASVAVGHREGLIGDRT 118

Query: 274 MDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGL 328
            +F   +   L   +    D  F Y GL+ LY RY L   I    +E PQ F +RVA GL
Sbjct: 119 AEFVAAHAARLDALVDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178

Query: 329 ALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E +         + I A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEAKGLAR-----KTIPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N   +     G VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  ASV+LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASVDLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++          
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIARA---AGAPAAE 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           A P+    S   +  I  S  +   CE CQ
Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790


>gi|307328556|ref|ZP_07607730.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306885824|gb|EFN16836.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 804

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/802 (38%), Positives = 438/802 (54%), Gaps = 32/802 (3%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +  + G  E++L    I ++  LI +EP Y+++ A
Sbjct: 26  LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRGLAIEAAAGLIAEEPEYSRLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           A                 +   +    H + +D  +   
Sbjct: 86  RLLALTITEEAAGQG------AVSFSTSVQVGHREGLLADSTAEFAAAHAARLDALVERA 139

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE-KR 338
             D     D  F Y GL+ LY RY L   I    IE PQ F +RVA GLA   +E+    
Sbjct: 140 LADGA---DKRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDD 196

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
             E Y L S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 197 VAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHA 256

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 257 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHA 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +A W+LFSP +   L DL+G E
Sbjct: 317 DLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGDE 376

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHV 576
           F+ AY   E +         +++ A  L+ +M+  L +TG+ W+TFKD  N   +     
Sbjct: 377 FDAAYRKAEAEGR-----AVKQVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEP 431

Query: 577 GVV-HSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDN 634
           G V HSSNLCTEI   ++  ETAVCNLGS+NL AH   + Q D+++L +T+ TAV  LD 
Sbjct: 432 GRVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWERLDATVHTAVTFLDR 491

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  ++A  SN   R +GLGLMG Q     L +P+ SPEA  ++    E I   A
Sbjct: 492 VVDINFYPTDEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLAA 551

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS ELA+  G + ++  +   +GV   D                T    W+ L+ R+ 
Sbjct: 552 YEASCELAERHGPHPAWSETRTARGVLHPDHY---------TDAVATWPERWEALRTRMA 602

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+  
Sbjct: 603 KSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKKLG 662

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+  +GS+     +P D++ ++ TA+EI    LIE A+ R  ++DQ+QSLN
Sbjct: 663 VWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQSLN 722

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD--PN 932
           L++  P+  KL  +Y  AW  G+KTTYYLRSR AT + +S   G        P       
Sbjct: 723 LFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGGAAATAPAPALIPVQQ 782

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +   +  I  S  +   CE CQ
Sbjct: 783 APAEADAIACSLENPESCEACQ 804


>gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 862

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/791 (34%), Positives = 419/791 (52%), Gaps = 35/791 (4%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           GT    + + L  ++     GL    +  +  +      + D L+  +  T +  +    
Sbjct: 14  GTSHKISREGLLDLLRSLSKGLDATHLRLEEAIDAIMSGLPDTLTTKEFYTYVSETVAAR 73

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +   P+Y+ +  R   + L+ +V     +  ++   +       + F    E+  K  + 
Sbjct: 74  VIYHPDYSILAGRVEAKFLQLQVPYRFSENVERLKQY--SPRKGKSFSPISEDFYKVVME 131

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
           H+ + D         +K +RD+   Y G++ L + Y L I+G   E PQ  F+RV++G+ 
Sbjct: 132 HKDVFD-------KMIKSDRDYDLTYFGIKTLENSYLLRIDGEVAETPQQMFLRVSIGIH 184

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQ 388
              T       E YNL+S  +F+ + PTL+N+G++   LSSCFL  +  D + GI+  L 
Sbjct: 185 ---THSVSHVEETYNLMSQKYFIHALPTLYNAGSKFNYLSSCFLMAMKDDSIDGIYKTLH 241

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGA 447
           E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG KR GA
Sbjct: 242 ETALISKASGGVGIHVHDIRANGSYIASTNGLSNGLVPMLRVFNNTARFVDQGGGKRPGA 301

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLE WH DV + LD+RKN G++  RT D+    WIPDLFM+RV  N  W+LFSPDE 
Sbjct: 302 FAIYLEPWHADVFDILDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFSPDEA 361

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L D+YG +F+  YE YE+     E    R I+A  LW  +L    ETG P++ +KD C
Sbjct: 362 PGLSDVYGDDFKELYERYEK-----EKLATRTINAQKLWLAILESQTETGGPYMLYKDAC 416

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLAS 623
           N +S Q+++G + SSNLC EI   SS  ETAVCNL S+ L +       + +FD+ KL  
Sbjct: 417 NRKSNQKNLGTIKSSNLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHE 476

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             +   + L+ VID+  + +E AK SN  HR I LG+ G       L +P+ S  A  + 
Sbjct: 477 VTKVVTKNLNKVIDVTMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLN 536

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            +  E +   AI AS+EL+   G Y+SF+GS   +G    D          +        
Sbjct: 537 IQIFETVYHAAIEASMELSIVEGPYASFQGSPASKGKLQFDLWNHKPSDLYD-------- 588

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD LK +V   G+RNS  +A  PTA+ + I G ++  +P   NLY +  +SG+F VVN
Sbjct: 589 -DWDILKSKVMKYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVN 647

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L+ +L    LW+ AM + L    GS+ NI+ +P +LK ++ T +E+    +I+ A+ R
Sbjct: 648 KYLIKDLIDLGLWNSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADR 707

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
            K+IDQ QS+N+YL  P+  KL   +  AW MGLKT  YYLR+++AT   + T+   +  
Sbjct: 708 AKFIDQLQSMNIYLQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTIDANEAN 767

Query: 923 LNAVPVTDPNS 933
           L     T  N 
Sbjct: 768 LVNTQQTSLNK 778


>gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
 gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
          Length = 813

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/780 (39%), Positives = 463/780 (59%), Gaps = 14/780 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +GT   +++ ++ + +E+A +GL D       + SE    ++DG++   L+ A
Sbjct: 2   AITVVKRNGTREPYDANKINLAIEDAATGLDDNITWVTQIASELELTLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL             +++ L+ E+F   + 
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYTDAA------DLKKLHKEHFGPNVI 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            GV+  LL   + + FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVEEGLLDPRLTEMFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL+L E    + A++FY  +SS  ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLSLNEANPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   T +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 MEHIAKTTRDVMWLTKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFL+LR N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EV+DL++LYGK F   Y  Y   AD GE+ +F+KI A   ++ +L  L  + HP
Sbjct: 356 YLFDPLEVTDLNELYGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDY 618
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  H       D+
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDF 475

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E
Sbjct: 476 AKIEESARLAVRQLDNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEE 535

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELA 737
           A ++ DE ME +S+ AI AS ELA+ERGAY++F+GS W +G+ P+DSI L  E R  E+ 
Sbjct: 536 AYDLIDEIMEHVSYAAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGMEIK 595

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +NR +RL WD ++++VK  GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  +G
Sbjct: 596 VNRKTRLDWDAMREKVKG-GMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNG 654

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  VN  LV  L+Q  LW E     +    G I N+E IPDD+K +  T+F++ P   +
Sbjct: 655 KFLEVNRNLVETLQQHGLW-EKNREAILRSQGDIQNVEGIPDDIKAVFKTSFQLSPYAFL 713

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E A+R QKWIDQA S N+YL+      +  IY  AW  G+KTTYYL  +     E+ST+K
Sbjct: 714 EVAARAQKWIDQAISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVK 773


>gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei str. Twist]
 gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei TW08/27]
 gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma
           whipplei TW08/27]
 gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str.
           Twist]
          Length = 792

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/777 (39%), Positives = 468/777 (60%), Gaps = 11/777 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  DG    ++S+++   +EEA SG  D  ++ + SE    ++DG++ S L+ +LI
Sbjct: 2   SLTVVKRDGRKQQYDSRKVCAAIEEALSGSSDAITEQLSSELELTLFDGITTSQLDESLI 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +   ++ +P Y +V  R LL+ + R VL       Q      ++ L+ ++F  +IE+G
Sbjct: 62  QVALQNVKDDPVYDRVATRLLLKSIYRSVLGEYKNCCQ------LRDLHVKHFRGFIEKG 115

Query: 264 VKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
           V+  +L   +   FD   L+  L  +RD  F+Y+GL  L +RY +   +G  +E+PQ  +
Sbjct: 116 VEEGILDRRLDGRFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLW 175

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MR++MGL++ E +    A++FY  +S   ++ +  TL N+GT  PQLS+CF+  + DD+ 
Sbjct: 176 MRISMGLSVLEKDPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIE 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    ++  +L K +GG+G   T +R  G+ I   N +S G IPF+   +    AV++G
Sbjct: 236 HIAKTTRDVMLLTKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRG 295

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GK+ GA+C Y+E WH+D  EF+DLR+N+GD  RRT   NTA WI D FMKRV  +  W L
Sbjct: 296 GKKFGALCFYMENWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYL 355

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  DL++LYG EF   YE Y  QA+ G + +F+K+ A   +R +L  L  T HPWI
Sbjct: 356 FDPLETPDLNELYGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWI 415

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           TFKD  N+R+   + G +H SNLCTEI L    E  +VCNL SINL  H  + + D+  L
Sbjct: 416 TFKDTINLRALNNNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLL 475

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             + R AVR LDN+IDI C +++++  SN+ +RAIGLG+MGF + +  L   Y S +A +
Sbjct: 476 EESTRLAVRQLDNLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFD 535

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNR 740
           + D  ME ISF AI  S  LA+ERG Y +F GS W +G+ PIDSI ++++ R   +++N 
Sbjct: 536 LIDRLMEQISFVAIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVPVSVNT 595

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + RL WD L+KRV+  G+RN+  +AIAPTA+I  + G +  +DP +  ++ +S   G F 
Sbjct: 596 SYRLDWDSLRKRVR-NGIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFL 654

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            VN  LV +LK+R LW E +  D+    G+I  I+ IP ++K  + T+F++ P   ++ A
Sbjct: 655 EVNENLVLDLKRRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVA 713

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           +R QKW+DQA S N+YL+      +  +Y  AW MGLKTTYYL  +     E+ST+K
Sbjct: 714 ARAQKWVDQAISRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVK 770


>gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium acnes KPA171202]
 gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA2]
 gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA3]
 gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA4]
 gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA1]
 gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL103PA1]
          Length = 856

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA1]
          Length = 856

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/858 (36%), Positives = 478/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL  H A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL001PA1]
          Length = 856

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/858 (36%), Positives = 478/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +      +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNARDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL097PA1]
          Length = 856

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F ++PM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLNPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL060PA1]
          Length = 856

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/858 (37%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     ++I   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRIRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
          Length = 811

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/824 (36%), Positives = 437/824 (53%), Gaps = 68/824 (8%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E +L      ++  LI ++P ++++ A
Sbjct: 25  LLRTLTELSADLPDADPGRVAAAALRGRSRHAGEEELRELATEAAAGLISEDPAHSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD---L 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 85  RLLTLTIRAEAASQGVTS----------------FTSSVATGHREGLVADRTAAFVRRHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +  + D  F Y GL+ L+ RY L   +    IE PQ F +RVA GLA +E ++ 
Sbjct: 129 ARLDALVDPDADDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLA-EEADRA 187

Query: 337 ----KRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL 387
                RAVE       L+S   ++ S+PTLFNSGTRHPQ+SSCFL   P D+L  I+   
Sbjct: 188 GAGADRAVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELDSIYSRY 247

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            + A L+K++GG+G  ++ +R  GA I GTNG S G++PFLK  + +  AVNQGG+RKGA
Sbjct: 248 HQVARLSKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQGGRRKGA 307

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V
Sbjct: 308 AAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPSDV 367

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L DL+G EF+ AY   E +         R + A  L+ +M+  L  TG  W+TFKD  
Sbjct: 368 PGLTDLWGAEFDAAYRAAEAEGL-----AVRTLPARELYGRMMRTLASTGTGWMTFKDTA 422

Query: 568 NI-RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----------- 614
           N   +     G V+HSSNLCTEI   +   ETAVCNLGSINL A                
Sbjct: 423 NRTANQTAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAG 482

Query: 615 ----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 D+++L +T+RTAV  LD VID+N +  E+A +SN   R +GLG+MG Q  L  L
Sbjct: 483 AADGGIDWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRL 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ SPEA  ++    E +   A   S ELA   G   +++ +   +GV   D      
Sbjct: 543 RLPFDSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHY---- 598

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                  +  +    W  L++R+   GMRN+  +AIAPTATIA+I GV + ++P   NL+
Sbjct: 599 ------DVELSWPERWAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLF 652

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F  VN +LV +LK+   WD      L+  +GS+  +  +P+++++++ TA+E
Sbjct: 653 KRETLSGEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWE 712

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT 
Sbjct: 713 LPQRALIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATR 772

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + ++            P            +  S  +   CE CQ
Sbjct: 773 IARAARAQRPAAEAPAPTV-----PDPEAVACSLENPEYCEACQ 811


>gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL074PA1]
 gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA1]
 gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL056PA1]
 gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL045PA1]
 gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA1]
 gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL038PA1]
 gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA2]
 gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA1]
 gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL099PA1]
          Length = 856

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIN 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 653

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/663 (37%), Positives = 376/663 (56%), Gaps = 29/663 (4%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L  +G  +E PQ   MRV++G+   + +K    +E Y+L+S   F  +TPTLFN+G
Sbjct: 6   RSYLLKADGKVVERPQHMIMRVSVGIHKDDIDK---VIETYDLMSQRLFTHATPTLFNAG 62

Query: 363 TRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQ+SSCFL T+  D + GI+  L++ A ++K++GG+G     VR   ++I GTNG S
Sbjct: 63  TPKPQMSSCFLLTMKEDSINGIYDTLKQCAQISKHAGGIGLSIHHVRAANSYIRGTNGSS 122

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+TA  V+QGG KRKG++  YLE WH D+  FLDL+KN G++  R  D+ 
Sbjct: 123 NGIVPMLRVFNNTARYVDQGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLF 182

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A WIPDLFM+RV  +  W LF P+E   L D + +EF+  YE YE +    E    R +
Sbjct: 183 YAMWIPDLFMQRVEADGDWNLFCPNEAPGLSDTHSEEFKELYEQYEAK----EGLSRRTM 238

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVC
Sbjct: 239 KARLLWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVC 298

Query: 601 NLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           NL SINL A             +D++KL        R L+ VID N + IE+A+ SN  H
Sbjct: 299 NLASINLSALVIPPTAETTKATYDFEKLQHISEVVTRNLNRVIDANYYPIEEARNSNMRH 358

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G   A   + +P+ S EA ++  +  E I F A++ASVELA+E G Y ++ G
Sbjct: 359 RPIGIGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAG 418

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   +G+   D  G+            T R  W  LK R+   G+RNS  +A  PTA+ A
Sbjct: 419 SPASEGLLQFDLWGVKP----------TGRHDWAALKARMAEHGLRNSLLVAPMPTASTA 468

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++S++P   N+Y +  ++G+FTVVN +L+ +L +R LW   + + +    GS+ N
Sbjct: 469 QILGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQN 528

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           + +IP +LK ++ T +EI   +++  A+ R  +I Q+QS+N+++ E S  KL  ++  AW
Sbjct: 529 VRQIPQELKDLYKTVWEIKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAW 588

Query: 894 LMGLKT-TYYLRSRSATSVEKSTLKGVDGKL--NAVPVTDPNSSTHSLGIPSSCTSDTEC 950
             GLKT  YYLR+R      + T+     K+       +   S             + EC
Sbjct: 589 KKGLKTGMYYLRTRPKADAIQFTVDQSSLKVSREEAAKSGAKSGAEGGSAGLEVEEEPEC 648

Query: 951 EVC 953
             C
Sbjct: 649 LSC 651


>gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA1]
 gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA1]
 gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA4]
 gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA3]
 gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA3]
 gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL092PA1]
 gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA2]
          Length = 856

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL ++ G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase, subunit alpha [Catenulispora
           acidiphila DSM 44928]
 gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 841

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/803 (38%), Positives = 438/803 (54%), Gaps = 59/803 (7%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L D+    V+ +T+  +  G     +    + S+  LI +EP Y+K+ A
Sbjct: 88  LAREIAACSADLPDIDVNRVVRKTFAGLPPGAGADQVADLAVQSAAELIGEEPQYSKLAA 147

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMDFDL 278
           R L   + RE                        F   +  G +  L+    E+++    
Sbjct: 148 RLLSGVIAREAAGQG----------------ATSFSASVAVGHREGLIGDVTEALITGAA 191

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +    D  FEY GL+ +YDRY L   +    IE PQ F +RVA GL+       
Sbjct: 192 ARFDAAIDPAGDLRFEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGLSQ----DP 247

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAK 395
           + AV FY L+SS  ++ S+PTLFNSGTRH Q+SSC+L   P D+L  I+    + A L+K
Sbjct: 248 QEAVGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVARLSK 307

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
           ++GG+G  ++ VR  GA I  TNG+S G++PFL+  + +  AVNQGG+RKGA C YLE W
Sbjct: 308 FAGGIGIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLEPW 367

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EEFL LR NTG+D RRTH++N ANWIPD FM+RV  +  W+L  PD+V +L DL+G
Sbjct: 368 HPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPDLWG 427

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            EF+ AY   E +         R++SA  L+ KM+  L +TG+ W+TFKD  N    Q  
Sbjct: 428 AEFDAAYRKAEAEGR-----YSRQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCNQTG 482

Query: 576 VG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRV 631
           V    VH SNLCTEI   SS  ETAVCNLGSINL AH   A +  D+D+L +T+RTAV  
Sbjct: 483 VPGNTVHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTAVVF 542

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LD VIDIN +  E+   SN   R +GLGLMG Q     L +P+    A E++    E I 
Sbjct: 543 LDRVIDINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISEEIY 602

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A+  S  LA+E GA+ +F  +   +G    D           +A +      W+ ++ 
Sbjct: 603 LTALETSAGLAEEFGAHPAFADTRAAKGDLQPDLWN--------VATSPELATRWNAVRG 654

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           RV   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  +NS LV ELK
Sbjct: 655 RVAATGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELK 714

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
              LW  A+   +K  +GS+  +E +P +++ ++ TA+E+    LI+ A+ R  +IDQ+Q
Sbjct: 715 ALGLWTPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQ 774

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           SLNL+L  P+  KL  +Y  AW  GLK+TYYLRSR AT +++                  
Sbjct: 775 SLNLFLAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPATRIQQ----------------AT 818

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
            +      +  S  +   CE CQ
Sbjct: 819 VAVAAEEAVACSLENPESCEACQ 841


>gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA2]
 gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA1]
 gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA2]
 gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA2]
 gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA2]
 gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA1]
 gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA3]
 gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA2]
 gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha
           [Propionibacterium acnes 266]
          Length = 856

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|282174153|ref|YP_003358255.1| ORF116 [Anguillid herpesvirus 1]
 gi|281308996|gb|ADA57879.1| ORF116 [Anguillid herpesvirus 1]
          Length = 833

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/813 (30%), Positives = 393/813 (48%), Gaps = 65/813 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
                +    G    +++K++   +E    GL    V    +++ T   +YDG++  +L+
Sbjct: 1   MDNFSVRKHSGRTEMWSTKKMLSKLESLSYGLNTDFVDLDRLVTATMDGLYDGITTKELD 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             +  ++        +Y+ +  R ++  + +  +    +         M    P      
Sbjct: 61  DVMARTAAGFTSYHFDYSLLAGRIVVNSIHKYTVGNFLQGAVLL--QNMDETKPHVTDEL 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +    K               +   + Y RD+ F +  ++ L   Y L +N   +E PQ 
Sbjct: 119 VAVARKYE-----------NQIQGAIDYSRDYTFNFFAIRTLERAYLLKVNERVMERPQH 167

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
            FMR+A+G+   + E     +E Y  LS   F  ++PTLF++GT   +L+SC+L T+  D
Sbjct: 168 LFMRIAIGIHGFDLE---SVLETYRCLSEKRFSHASPTLFHAGTNFAKLASCYLVTLADD 224

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  LQE A +AK SGG+G   + VR  G+ I+ TNG + G++P L+V N     V
Sbjct: 225 SIAGIYSTLQECAQIAKCSGGIGAAISNVRAEGSAINSTNGTANGLVPMLRVFNAMTRMV 284

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA+  +LE WH D+  +LDL+KN GDD  R  D+    WI DLFM+RV  + 
Sbjct: 285 DQGGNKRPGAMAVWLEPWHADIAAWLDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQ 344

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P +   L D+YG +F   Y  YE Q         +++ A  LW  +L    E G
Sbjct: 345 MWSLMCPKKCPGLMDVYGSDFVALYTKYESQG-----MYVKQVEARELWTHILRSQMENG 399

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----- 612
            P++ +KD CN +S QQHVGVV   NLCTEI   S     AVCNL ++ L    A     
Sbjct: 400 MPFMMYKDSCNRKSNQQHVGVVKCGNLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGI 459

Query: 613 ------------------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                                      FD+ +L       V+ L+ VID + +  + A  
Sbjct: 460 RQASRTEVASSASSAVQACEDPTCRKSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANH 519

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N   R +G+G+ G      +L + +   EA  +  +  E + +HA++AS +LA+E   Y
Sbjct: 520 RNSQDRPLGIGVQGLADVFAMLGLAFDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPY 579

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            ++KGS   QG+F  D  G+            ++   W  LK+RV+  G+RNS  +A  P
Sbjct: 580 PTYKGSPVSQGIFQFDMWGVKP----------SAMHDWTSLKRRVQKYGVRNSLLLAPMP 629

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TA+ A I G +++ +P   NL+ +  +SGDF ++N  LV EL +  +W E     L   +
Sbjct: 630 TASTAQIFGNNEAFEPFTNNLFTRGVLSGDFQIINPHLVRELIRLGMWGEETRMRLMADN 689

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI   E +P   + +  T +EI    +I  A+ R  +IDQ+QSLN+++ +P+  KL  +
Sbjct: 690 GSIRTWEDVPQHTRDVFKTVWEISQKTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSM 749

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +   W  GLKT  YYLRSR A +  + T+    
Sbjct: 750 HMYGWQKGLKTGMYYLRSRPAVNAIQFTVDKTK 782


>gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Kitasatospora setae KM-6054]
          Length = 804

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/811 (38%), Positives = 451/811 (55%), Gaps = 49/811 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L  ++ +  + L  V    V +   +  + G   ++L    + ++ ++I ++P Y+K+ A
Sbjct: 25  LLRLLTDRSTDLPQVDPGHVAAAALRGRHAGSDFAELRGLAVEAAASMIAEDPQYSKLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL---HESMMDFDL 278
           R L  ++R E  T                     F   +  G    L+     + +    
Sbjct: 85  RLLALEIRDEAATQQVTS----------------FSSSVAVGHAEGLIGDATAAFVAAHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEK- 335
               + +    D  FEY GL+ +  RY L   I    +E PQ F +RVA GLA+  +E+ 
Sbjct: 129 DLFDSLVDEAGDDRFEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAVGTSEES 188

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
            +   E Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 189 VREVAELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNRYAQIARLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG+S G++PFL+  + +  AVNQGG+RKGA C YLET
Sbjct: 249 KHAGGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLET 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  NA W+LFSP +V +L DL+
Sbjct: 309 WHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPADVPELVDLW 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G +F+ AY   E           R I A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 369 GADFDEAYVKAELAGK-----AVRTIPAQTLYARMMRTLAQTGNGWMTFKDASNRAANQT 423

Query: 575 HVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLAST 624
            +    VHSSNLCTEI   +   ETAVCNLGS+NL AH A         N  D+D+L +T
Sbjct: 424 ALPGRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDWDRLDAT 483

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD VIDIN +   +A  SN   R +GLG+MG Q     L I + S EAV ++ 
Sbjct: 484 VRTAVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAEAVALST 543

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A   S +LA+  G + ++  +   +G   +D  G         A N     
Sbjct: 544 LIAERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFG---------AANPQWTE 594

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+ R+  +G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN 
Sbjct: 595 RWDALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNP 654

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV ELK+  +WD+     L+  +GSI     +P +++ ++ TA+E+    LI+ A+ RQ
Sbjct: 655 YLVRELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQ 714

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            +IDQ+QSLNL++  P+  KL  +Y  AW +GLKTTYYLRSR AT + ++   G      
Sbjct: 715 PYIDQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPATRIAQAAP-GAARTAA 773

Query: 925 AVPVTDPN-SSTHSLGIPSSCTSDTECEVCQ 954
            VPV  P  S      I  S  +   CE CQ
Sbjct: 774 PVPVQTPTLSQAEQDAIACSLENPESCEACQ 804


>gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA3]
          Length = 856

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/858 (36%), Positives = 478/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RR    +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL020PA1]
          Length = 856

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/858 (36%), Positives = 479/858 (55%), Gaps = 42/858 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRN 120

Query: 255 YFCRYIEEGVKARLLHES-MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E    DFDL  LA  L   RD    ++G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQ 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFD 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S++L AH A
Sbjct: 421 LQTTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLA 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK-----------------GVDGKLNAVPVTDPNSSTHSLGI---------- 940
             + E+ST+                   V     A  +  P + T +  +          
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLID 838

Query: 941 PSSCTSDT----ECEVCQ 954
            +SC  D     +CE CQ
Sbjct: 839 GASCPVDPQERQQCESCQ 856


>gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 765

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/792 (31%), Positives = 397/792 (50%), Gaps = 55/792 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188
           ++ ++  DG+  + +  ++   +   C               +GL  V    +++    +
Sbjct: 8   RMNVIKRDGSTEAVSFDKIMTRISRLCWPENGKPTHKGSRAQNGLA-VDISRIVASICAS 66

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + D ++   L+      + +L    P+Y  + AR  +  L+++   ++     K  H   
Sbjct: 67  IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVDTYTKLEH--- 123

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             L  + F   +            +                           +   Y   
Sbjct: 124 --LLSDEFMNLVRT--YGDQYQGFIDYDRDFDFDYFGF------------STMQRLYLTK 167

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +    IE PQ  ++RVA+ L   + E   R  E Y+ LS   F  ++PTLFN+G +   L
Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIE---RVKETYDALSRRKFTHASPTLFNAGFKKANL 224

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S G++P L
Sbjct: 225 ASCFLVHCNDSLSDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A W+ DL
Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +A W+L  P E   L D+YGKE+E  Y  YE +         R + A  +W  
Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYESEGK-----AKRVVKARDVWNT 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +GSI L 
Sbjct: 400 MVTTQIETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G Q    
Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+      G+
Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ +P   N
Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  ++G+F VVNS+LV EL  R  W E M + +  + GSI  +  I  D+K ++ T+
Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
           +EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  YY+RS+ 
Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKP 748

Query: 908 ATSVEKSTLKGV 919
           A +    T+   
Sbjct: 749 AANAIAVTVDEC 760


>gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium
           roseum DSM 5159]
 gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 770

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/767 (42%), Positives = 447/767 (58%), Gaps = 24/767 (3%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           ++L+ + I S    +   P   +  A  LLEK+ RE                    YPE+
Sbjct: 20  AELD-SRILSCLQQLPDRPEAEREAAALLLEKIAREA------------DDGTPLPYPEH 66

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
           F R++E G+    L   +  F L  LA  L   RD    Y  L  L DRY +    +R  
Sbjct: 67  FRRFVERGIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVRDPETRQL 126

Query: 314 IEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +E PQA FMRVAMGLAL E  + +   A+ +Y+L+SS  ++ STPTLFN+GT H QL+SC
Sbjct: 127 LERPQALFMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTPHHQLASC 186

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  V D L  I G+  E  MLAKY+GG+G   T +R  GA + G NG S G+IPFL + 
Sbjct: 187 YLAEVEDSLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGLIPFLHLY 246

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +    +++QGG+R+G +C YLE WH++VE FLDLR+N GD  RRTH +NTA WIPD F++
Sbjct: 247 DALIASISQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALWIPDEFLR 306

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKM 549
           RV  +  W LF P    +L DL G  F   Y    RQA+ G    + +R++ A  LW  +
Sbjct: 307 RVETDDLWYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPARELWLAI 366

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L  L ETGHPW+TFKD  N+RS  + +GV+HSSNLCTEI L +S +E AVCNLGS+NL  
Sbjct: 367 LASLMETGHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNLGSVNLAR 426

Query: 610 HFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H     + D+++LA+T+R A+R LDNVID N +  E+A ++N  +R +GLGLMGF   L 
Sbjct: 427 HCTPTGELDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLMGFAELLA 486

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + YA P A ++AD+  EF+S+HAISAS  LA+ERGA+ +F  S W  GV PID++  
Sbjct: 487 RRAVSYAEPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVLPIDTLDE 546

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           LA  R   + ++RT RL W+ L++RV+  GMRN   MA+APTATIA + G + S+DP Y 
Sbjct: 547 LAADRGLPVEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTTPSLDPYYA 605

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N++ +  +SG F  VN  LV EL++R LW E ++  L    G +  +   P DL     T
Sbjct: 606 NVFSRQTLSGKFLEVNPILVEELRRRGLW-EQLLPGLVAARGDLRAVPGCPPDLVARFPT 664

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+++     IE A+R QKW+D   S NLY       ++  +Y  AW  GLK+TYY   R 
Sbjct: 665 AYQVPAESYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKSTYYCFVRP 724

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +E+ST+     +     V        +    +SC  D  CE CQ
Sbjct: 725 RMEIEQSTVAVNKARRRPQWVQLAEREVLA-SDAASCRLDGSCESCQ 770


>gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella
           virus MT325]
          Length = 765

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/792 (32%), Positives = 403/792 (50%), Gaps = 55/792 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188
           ++ ++  +G+  + +  ++   +   C               +GL  V    +++    +
Sbjct: 8   RMNVIKRNGSSEAVSFDKIMTRISRLCWPENGKPTHRGSRAQNGLA-VDISRIVANICAS 66

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + D ++   L+      + +L    P+Y  + AR  +  L+++   ++     K  H   
Sbjct: 67  IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVDTYSKLEH--- 123

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             L  E+       G + +   +   DFD  Y                    +   Y   
Sbjct: 124 -LLSDEFMNLVRTHGDQYQAFIDYDRDFDFDYFGFA---------------TMQRLYLTK 167

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +    IE PQ  ++RVA+ L   + E   R  E Y+ LS   F  ++PTLFN+G +   L
Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIE---RVKETYDALSRRKFTHASPTLFNAGFKKANL 224

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S G++P L
Sbjct: 225 ASCFLVHCNDSLTDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A W+ DL
Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +A W+L  P E   L D+YGKE+E  Y  YE +         R + A  +W  
Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYESEGK-----AKRVVKARDVWNT 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +GSI L 
Sbjct: 400 MVTTQMETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G Q    
Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+      G+
Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ +P   N
Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  ++G+F VVNS+LV EL  R  W EAM + +  + GSI  +  I  D+K ++ T+
Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
           +EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  YY RS+ 
Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKP 748

Query: 908 ATSVEKSTLKGV 919
           A +    T+   
Sbjct: 749 AANAIAVTVDEC 760


>gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 828

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/836 (36%), Positives = 475/836 (56%), Gaps = 34/836 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLSESDLETA 201
            + ++  DGT   ++   +   +EEA +GL D  ++   + SE    ++DG++   L+ A
Sbjct: 2   TITVIKRDGTRAPYDGYEIARSIEEAATGLPDQVARVTQLQSELEITLFDGITSEQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           ++  +   ++ +P +  + +R L++ L ++V        +  T  E+   +   F   + 
Sbjct: 62  VVGVALQNVKDDPAFDTIASRLLVKTLYKKVFG------EGVTRDEVDAFHGPAFVASVV 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQA 319
            GV+  LL   + + +DL  L   L   RD    Y+G+Q +  RY  +  +G+ +E+PQ 
Sbjct: 116 RGVELGLLDHRLAERYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQF 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MRV+MGLAL E +    A+ FY+ +S   ++ +  TL N+GT + QLS+CF+  + DD
Sbjct: 176 FWMRVSMGLALDEADPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  ++++   L K +GG+G   + +R  G+ I   +  S G IPF+   + T  A++
Sbjct: 236 IEHIAKSVRDVMWLTKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAIS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  +FLDLR N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P +V DL +L+G  F   Y  Y  +AD G ++  +K+ A   +R +L  L  + HP
Sbjct: 356 YLFDPLDVPDLTELFGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQ 615
           W+T+KD  N R+   + G +H SNLCTEITL    +  AVCNL SINL  H      +  
Sbjct: 415 WLTWKDTINTRALNHNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAH 474

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+LA + R AVR LDN+IDI   ++ ++++SN  +RA+GLG+MGF   +      Y 
Sbjct: 475 IDWDRLAGSTRLAVRQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYE 534

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734
           S +A ++ DE MEF+S+HAI AS +LA+ERGAY +F+GS W QG+ PIDS+ LLA  R  
Sbjct: 535 SEQAYDLIDEVMEFVSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGV 594

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++RT+RL WD L+ +V   G+RNS  MA+APTA+I  + G +  +DP +  ++ ++ 
Sbjct: 595 PVEVDRTTRLDWDALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRAT 653

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            SG F  VN  LV +L+   LW E +  DL  H G +  ++ +P +L++I+ T+F++ P 
Sbjct: 654 SSGKFLEVNRNLVEDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPY 712

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             +  A+R QKWIDQA S N+YL      ++  +Y  AW MG+KTTYYL      + E+S
Sbjct: 713 AFLHVAARAQKWIDQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQS 772

Query: 915 TLKGVDGKLN------------AVPVTDPNSSTHSLGIPSSCTSDT----ECEVCQ 954
           T+K      +            AV           +   ++C  D     +C+ CQ
Sbjct: 773 TVKVNKAASSTPAGGAARRGFGAVATAPVEVQELEVVDGAACPVDPAERLQCDSCQ 828


>gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 748

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/755 (30%), Positives = 392/755 (51%), Gaps = 32/755 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   +E  C GL    V    +      N+  G++ S+L+   
Sbjct: 8   MHVLKRDGHKEPVHFDKITGRIEALCYGLDMNYVDPSAIALRVITNLCSGVTTSELDNLA 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+I + P+YA + +R  +  L +E    V+ +     ++    +  E+     E+
Sbjct: 68  AETAATMINQHPDYATLASRIAISNLHKET-KKVFSEVIANLYYAKSSITNEHLPIISEK 126

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF + Y   ++L   + L +NG  +E PQ   M
Sbjct: 127 YY-------QIIQNNADKLNSAILYDRDFNYSYATFKMLESDHLLKLNGKVVERPQHMLM 179

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           R+A+ +  ++ +K    +E YN +S  +F+ +  T+  + T   Q++S FL T+  D + 
Sbjct: 180 RIAVAIHGEDIDK---VIETYNFMSKQYFIYAAQTIDTACTITQQMASTFLLTMSGDSID 236

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI   L+   +L  Y+G +G +   +R     I GT G S G++P LK  + +   V++ 
Sbjct: 237 GILDTLERFTILCDYNGEIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKTYDTSIGTVSKN 296

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            K +G +  YLE WH D+ EFLDL+++ G+++ R   M    W P+LFMKRV  +  W+L
Sbjct: 297 DKNEGPITVYLEPWHSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSL 356

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L + +G EFE  Y  YE++      +  R+I A  LW  ++ +  ETG P+I
Sbjct: 357 MCPHECPGLIEAWGDEFETLYTKYEQEG-----RFRRQIKARELWLLIIQIQCETGVPYI 411

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619
            FKD CN +S  QH+G +  S+  TE+   SSS+E A+CN  SI  N+  +     FD+ 
Sbjct: 412 IFKDHCNYKSNHQHLGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFY 471

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +     LD +ID+N + + +AK S   HR+IG+G+ G   A  L+  P+ S EA
Sbjct: 472 KLKEIAKIVTHNLDKMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEA 531

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E+  +  E + + A+ AS E+A E+G Y S+K S   +G+   D   +           
Sbjct: 532 NELNVQIFETLYYGALEASCEIATEKGPYESYKDSPISEGILQFDMWHVKP--------- 582

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T+   WD LK ++   G+RNS  +A    A +A +   + SI+P   N+Y    +S  +
Sbjct: 583 -TNLWDWDILKAKIAKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQY 641

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           +++   L+ +L ++ LWDE M + + ++ GSI NIE IP+DLK ++ T +E+    + E 
Sbjct: 642 SIIKPHLLRDLIEKGLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEM 701

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           A+ R  +IDQ+Q LN+++ +P  +KL  ++  AW 
Sbjct: 702 AASRGPFIDQSQCLNVHMIDP-LEKLTSMHFFAWE 735


>gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 744

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/760 (31%), Positives = 395/760 (51%), Gaps = 34/760 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +   +   ++  C  L    V   I+      ++Y G++  +L+   
Sbjct: 1   MHVLKRDGRKEPVHFDEITARIKTLCYDLDMNYVDPSIIALRVITDLYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++I + P+YA + AR  +  L +E         +K     +  LY        + 
Sbjct: 61  SEIAASMINQHPDYAILAARIAISNLHKET--------KKTFSEVIADLYDAKNSITNKR 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  +  ++  +   L + + Y+RDF + Y   ++L   + L +NG  +E PQ   M
Sbjct: 113 LPIISEKYYKIIQSNADKLNSAIIYDRDFNYSYTTYKMLETNHLLKLNGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+ +   + +K   A+E YN LS  +F+    TL  + T   Q++S FL T+  D + 
Sbjct: 173 RVAIAIHDDDIDK---AIETYNFLSKQYFIYPAQTLDTACTVTQQMASSFLLTMSGDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI   L+ +A+L  Y+G +G +   +R     I GT G S G++P LK  N +   V++ 
Sbjct: 230 GILDTLERSAVLCHYNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKAYNTSIATVSRK 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
              +  V  YLE WH D+ EFLDL+KN G+++ R  DM  A W PDLFM+R+  +  W+L
Sbjct: 290 NTEQ--VTVYLEPWHADIFEFLDLKKNIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSL 347

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E  DL + YG+EFE+ Y  YE++         ++I A  LW  ++   FETG P+I
Sbjct: 348 MCPHECPDLIEAYGEEFELLYTRYEKEGR-----FRKQIKARDLWLLIIQTQFETGTPYI 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619
            +KD CN ++  Q++G +  S   TEI   SSS+E A+CN  SI  N+        FD++
Sbjct: 403 VYKDHCNRKTNHQNLGTIKCSGFSTEIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFN 462

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL   ++     LD +ID N + + + K S   HR+IG+G+ G   A  L+  P+ S EA
Sbjct: 463 KLKEIVKIVTYNLDKMIDANFYPLPEIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEA 522

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E + + A+ AS E+A ++G+Y S+KGS   +G+   D               
Sbjct: 523 RKLNIQIFETLYYGALEASCEIAIKKGSYVSYKGSPISKGMLQYDMWNAKP--------- 573

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LKK+++  G+RNS  +A    A +A +   + S++P   N+YV   +S  F
Sbjct: 574 -TDLWDWNTLKKKIEEHGVRNSLLIAQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQF 632

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +V   L+ +L ++ LWDE + + +  +DGSI NIE IP++LK ++ TA+E+    + + 
Sbjct: 633 RIVKPRLLRDLIEKKLWDENICNKIINNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDM 692

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           A+ R  +IDQ+Q LN+++ +P  +KL  ++  AW  GLK+
Sbjct: 693 AACRGPFIDQSQCLNVHMIDP-LEKLTSMHFYAWENGLKS 731


>gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
 gi|81990393|sp|Q7T6Y8|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
          Length = 881

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/834 (30%), Positives = 420/834 (50%), Gaps = 54/834 (6%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +  +G++    S+ +   VE+    ++   +    +    +  +    +  D++  +I +
Sbjct: 72  LDHNGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIIST 131

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  ++    +Y K+    L+  L         +  +K  +++             E    
Sbjct: 132 ASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKS------------ESNKN 179

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A ++ E++ +F    +  +   ++Y+RD+     G + L   Y   IN   +E PQ  FM
Sbjct: 180 APIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKIVERPQHLFM 239

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA+ L  +      R  E Y  LS  +F  +TPTLFN+GT H QLSSCFL  + D L  
Sbjct: 240 RVAITLHYR-KNDLDRIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFLLGIGDSLEE 298

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I    +E A+++K++GG+G   T +R  GA+I  T G++ G+   L + ND +   NQGG
Sbjct: 299 ISECWKECALISKHAGGIGIHMTNIRVEGAYIASTQGEAGGL-RVLTIFNDISRYANQGG 357

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR G+   ++E WH D+  FLDL+KNTG +  R  D+     I D+FM+RV ++  W+L 
Sbjct: 358 KRPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLM 417

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  +L + YG EF   Y  YE +         ++I A+ LW K++    ETG P++ 
Sbjct: 418 CPSQCPNLLNKYGDEFTKEYLKYESEGI-----YLKQIRAIDLWFKIMESQIETGVPYVM 472

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDY 618
           FKD  N +S Q ++GVV+ SNLC EI   S     +VCNL SI L            F+Y
Sbjct: 473 FKDAINDKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSICLPRFVKIIDEVPTFNY 532

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    R   R L+N+IDIN + ++K + +N   R IG+G+ G      +   P+ S  
Sbjct: 533 QKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEI 592

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I + A++ S +LA+E G Y +++GS   QG F  D              
Sbjct: 593 ARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKS------- 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    W+ L++ +   G+RNS      PTA+ + I G ++ I+P  +N+Y +S M+G+
Sbjct: 646 QLSGMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGE 705

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           + V+N  L+ +L +  +W+  M+  +KY+ GS+ NI  IPD++K I+ T +EI    +IE
Sbjct: 706 YFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIE 765

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  ++DQ QS+NLY+D+PS  +L+     AW  GLKT  YYLRS+ A+S  +  + 
Sbjct: 766 MAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGID 825

Query: 918 -----------GVDGKLNAVPVTDPNSSTHSLG-------IPSSCTSDTECEVC 953
                      G+  + +   +TD  ++ +          +P+      EC  C
Sbjct: 826 IDKIKEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHLRKPGECLSC 879


>gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
          Length = 790

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/838 (41%), Positives = 489/838 (58%), Gaps = 76/838 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G    F+  ++E  V  A  G   V S+ V+ +    +YDG+  SD++ ALI 
Sbjct: 1   MNVTKRNGATEPFSPSKIEKAVNWAVDGTS-VESQEVIDKAILLIYDGIKTSDIQQALIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  L+     + + V+AR LL  L + V     K       +        +   Y+E+G
Sbjct: 60  GAAKLVSATKADASLVSARLLLLDLYKTVCGVNGKVSGGGFQYP-------HIKDYLEKG 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN------------- 310
           V  +LL   ++++DL  +   +K ERD +F YLGL  L DRYF+  N             
Sbjct: 113 VSLKLLDPELLNYDLERINAAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMS 172

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           G+ IE+PQ F+MRVAMG+ALKE  + +   A+ +Y L S   ++ STPTLFN+GT HPQL
Sbjct: 173 GNIIELPQHFWMRVAMGVALKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQL 232

Query: 369 SSCFLTTVPDDLY---------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           SSC+L  V D +           IFGA++E A+L+K++GG+G DWTPVRG    I GTNG
Sbjct: 233 SSCYLNQVSDTIAADEGDNRFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNG 292

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GV+P++KV N+TAVAVNQGGKRKG+V  YLE WH D   F +L++ +GDDRRR HD+
Sbjct: 293 ISSGVVPYIKVQNNTAVAVNQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDV 352

Query: 480 NTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
             A W+PDL ++R    NA W+ FSP    +LH+LYG++F   YE  E   +        
Sbjct: 353 FPAAWVPDLLIERKEDPNAMWSFFSPKRFPELHELYGEDFVKRYEELEAAGEYDF----- 407

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A+ +WR +LT LFETGHPWIT+KD CN R+PQQH GV+H SNLCTEITLN+S +ETA
Sbjct: 408 QLPAIQVWRHLLTNLFETGHPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETA 467

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGSINL +   +     ++L   IR A+R LD+VID+N +  ++A  SN  HR IGL
Sbjct: 468 VCNLGSINL-SQVMSAPNPLERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGL 526

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG+   L    + + S E ++ AD   E IS+ AI AS +LAQERG+Y SF+GS W +
Sbjct: 527 GVMGYYEWLVKQGVDFESEEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSK 586

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+ PID+  L+ + +     ++  R  W+ L+++VK  GMRNSN MAIAPTATI+NI G 
Sbjct: 587 GILPIDNAKLMEDGKPFF--DQPRRFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGT 643

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +Q  +P +   Y KSN+ G + VV+                       H G         
Sbjct: 644 TQCTEPPFLLEYFKSNLGGTYQVVDP-------------------AIAHVG--------- 675

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
            D   +   ++ +D +++I++A+ RQKWIDQ+QS NL+  +  +G+ LD  Y  A  +GL
Sbjct: 676 -DKYHLLKESYYVDQLYIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGL 734

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           KTTYYLR++S      S    V  +L    +   +  T S   P  C+  D +CE CQ
Sbjct: 735 KTTYYLRNQSDAEKSASMRTKVIAELANAALGKLSEPTESA--PKMCSILDPDCESCQ 790


>gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL044PA1]
          Length = 854

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/856 (35%), Positives = 475/856 (55%), Gaps = 40/856 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGIT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRS 120

Query: 255 YFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKK 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTID 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH  
Sbjct: 421 LQTTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLV 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW ++   +L    G    I+ IP  L+ ++ T
Sbjct: 660 QMFSRTTSAGKFLEVNRNLVADLKDLGLW-DSTREELLRRQGDPSEIDAIPASLRHLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK--GVDGKLNA-----VPVTDPNSSTHSLGIP------------------S 942
             + E+ST+      G+ N            +S T ++  P                  +
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGT 838

Query: 943 SCTSDT----ECEVCQ 954
           +C  D     +CE CQ
Sbjct: 839 TCPVDPQERQQCESCQ 854


>gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA2]
 gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium sp. P08]
          Length = 854

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/856 (35%), Positives = 475/856 (55%), Gaps = 40/856 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLS 194
             A     +++   DG+L  ++   +   + ++  GL D  ++  ++ +E    ++DG++
Sbjct: 1   MSADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGIT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  
Sbjct: 61  TDALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRS 120

Query: 255 YFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           YF R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L     +
Sbjct: 121 YFPRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKK 180

Query: 314 -IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E+PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF
Sbjct: 181 ALEVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCF 240

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   +
Sbjct: 241 VMRTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTID 300

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T  AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKR
Sbjct: 301 STLRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKR 360

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  
Sbjct: 361 VAKDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           L  T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH  
Sbjct: 421 LQTTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLV 480

Query: 613 NN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L 
Sbjct: 481 GPRGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLE 540

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            + +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +
Sbjct: 541 QIRVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAV 600

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L   R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP + 
Sbjct: 601 LERDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFS 659

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ ++  +G F  VN  LV +LK   LW ++   +L    G    I+ IP  L+ ++ T
Sbjct: 660 QMFSRATSAGKFLEVNRNLVADLKDLGLW-DSTREELLRRQGDPSEIDAIPASLRHLYRT 718

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +F +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL    
Sbjct: 719 SFTLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLP 778

Query: 908 ATSVEKSTLK--GVDGKLNA-----VPVTDPNSSTHSLGIP------------------S 942
             + E+ST+      G+ N            +S T ++  P                  +
Sbjct: 779 RHTAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGT 838

Query: 943 SCTSDT----ECEVCQ 954
           +C  D     +CE CQ
Sbjct: 839 TCPVDPQERQQCESCQ 854


>gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
 gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
          Length = 800

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 413/797 (51%), Gaps = 45/797 (5%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
            + +  + +  S    +    +  E+   + D ++  +  +    ++ ++  K  +Y + 
Sbjct: 44  NKFKKYISDLDSRFIAIDEYFLKIES--GLCDDITVEEFISFAAETADSMTTKHYDYGRF 101

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +A+ L+E L+   L + + K      ++    Y E F   + +  K              
Sbjct: 102 SAKILMEYLKENTLDSFFAKVDYI--YKNGDFYSEKFYNIVLDNKK-------------- 145

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           +L   + Y +D ++ Y  +  L   Y L ++G  IE PQ   +RVA+ L     E     
Sbjct: 146 FLDELVDYSKDDSWTYFAILTLKRAYLLTLDGQTIERPQDMLLRVAVQLHGDNLEN---V 202

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSG 398
            E Y LLS+  +   +PT+FNSG++  QL+SCFL T + + + G+F  ++    ++K  G
Sbjct: 203 KETYELLSNNMYTHGSPTIFNSGSKKSQLASCFLLTPIEETVEGLFETVKRCVQISKSGG 262

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHI 457
           G+  D   +   G  I  T G S+G+IP+++V N +   + Q G R+ G    YLE WH 
Sbjct: 263 GVALDLHDMAAKGTSIRKTGGISKGIIPYIQVLNWSLKYIGQAGSRRSGCPAIYLEPWHK 322

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FLDLRK+ G D  R  D+ T  WI DLFMKRV  N  W+LF P  V  L + YGKE
Sbjct: 323 DIFDFLDLRKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFCPKSVPGLSNAYGKE 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  Y  YE++ D         + A  +W+ ++    ETG P++ +KD  N  S Q+++G
Sbjct: 383 FEDMYLEYEKKVDCVV------VPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIG 436

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +  SNLCTEI   +S +E AVCNL SI L     N +FD++   S ++   +  + VID
Sbjct: 437 TIRCSNLCTEIVQYTSPDEVAVCNLASICLPKFVINGEFDFNLFKSVVKIVTKNANIVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + +++A+KSN  HR IGLG+ G      +L +PY S  A ++  E  E + F A+ +
Sbjct: 497 CNFYPLKEAEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALES 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S E A++ G Y S+ GS   +G+F  +              + T R  W+EL+K++   G
Sbjct: 557 SCEEAEKYGPYESYNGSPISKGIFHWEMANS----------STTGRWNWEELRKKILKYG 606

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  +A  PTA  + I   +++ +P   N+Y +    G+F +VN +L+N+L + ++W 
Sbjct: 607 VRNSLLIAPMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMWS 666

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +   +GSI NI  IP+++K+++ T +EI    +I+ A+ RQ ++DQ QSLNL++
Sbjct: 667 PEIKNYIVEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLFV 726

Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +P+   L  ++   W  GLKT  YYLR+R  TS  K T+      L+ +   + N +T+
Sbjct: 727 AKPTYPILSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTVD-----LDMLKKVEKNEATN 781

Query: 937 SLGIPSSCTSDTECEVC 953
                +       CE C
Sbjct: 782 EELKENEINKSDICESC 798


>gi|224097022|ref|XP_002189376.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Taeniopygia guttata]
          Length = 847

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/855 (32%), Positives = 418/855 (48%), Gaps = 86/855 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
             P + +   DG        ++   +++ C GL       +   ++              
Sbjct: 35  DTPGVGVSPGDGRQERVMFDKITSRIQKLCYGLNADFVDPLCVSSF-------------- 80

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                        P    +     L  L  E        P+  T   M+ LY        
Sbjct: 81  -------------PGAQFLLWDLDL--LVPEASQASSNPPK--TCDVMEDLYTYINPHN- 122

Query: 261 EEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             G  + ++ +  +D  L     L + + Y+RDF++ Y G + L   Y L IN    E P
Sbjct: 123 --GKHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERP 180

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRV++G+   + +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + 
Sbjct: 181 QHMLMRVSVGIHKADIDA---AIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMK 237

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 238 DDSIEGIYDTLKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTAR 297

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  
Sbjct: 298 YVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVET 357

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L D++G+EFE  YE+YERQ      +V R + A  LW  ++    E
Sbjct: 358 NQDWSLMCPNECPGLDDVWGEEFEKLYESYERQG-----RVRRVVKAQQLWYAIIESQTE 412

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NN 614
           TG P++ +KD CN +S QQ++G +  SNLCTEI   +S EE AVCNL SI L  +    +
Sbjct: 413 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTPEH 472

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+ KLA   +  VR L+ +IDIN + + +    N      G       S    L    
Sbjct: 473 SYDFKKLAEVTKVIVRNLNKIIDINYYPVPE--DLNRAQFVRGAPHAELSSEETWLPQTP 530

Query: 675 ASPEAV-----------------EIADESMEFISFHA-ISASVELAQERGA-YSSFKGSL 715
            SPEA+                 E        +       A +E   E G  Y  +K S 
Sbjct: 531 RSPEALPGFWGSGLTGLRVRCSYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSC 590

Query: 716 WDQGVFPIDSIGLLAEVRDELA---------------MNRTSRLPWDELKKRVKTIGMRN 760
             +           + +  E+                +  +    W  LK+++   G+RN
Sbjct: 591 NRKSNQQNLGTIKCSNLCTEIVEYTSREEILQYDMWNVTPSDLWDWKALKEKIAKYGVRN 650

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  ++  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +R LW+E M
Sbjct: 651 SLLISPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEM 710

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
            + +  H+GSI NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP
Sbjct: 711 KNQIIAHNGSIQNIPEIPDDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEP 770

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSL 938
           +  KL  ++   W  GLKT  YYLR++ A +  + TL K    +       +     +  
Sbjct: 771 NYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASREEEEKERNKA 830

Query: 939 GIPSSCTSDTECEVC 953
            +  S  +  EC +C
Sbjct: 831 AMVCSLENREECLMC 845


>gi|313903042|ref|ZP_07836437.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466766|gb|EFR62285.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
          Length = 930

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/749 (41%), Positives = 450/749 (60%), Gaps = 20/749 (2%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + ++P + +V  R  L +L R+VL      P++         Y   F 
Sbjct: 83  LEELLVQAATQNLHRDPEFERVAVRARLRQLYRQVLGEPVPGPER---------YRAAFP 133

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI  GV    L E ++ FDL  LA  L+ ERD +  ++GL  L DRY +    SR  +E
Sbjct: 134 AYIRRGVACGALDERLLAFDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLE 193

Query: 316 MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  FMRVAMGLAL E    +   A+ FY  +S+F ++ STPTLFN+GT H QLSSC+L
Sbjct: 194 TPQYLFMRVAMGLALAEEPARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCYL 253

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  A  +   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   + 
Sbjct: 254 ADVHDSMDHILEAAGDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYDA 313

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++RV
Sbjct: 314 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 373

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLT 551
                W LF P  V +L + +G  F  AY    RQA+ GE   + ++++ A  L+R++L 
Sbjct: 374 EAGEPWYLFDPAYVPELPERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREILA 433

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L ET HPW+ FKD  N+RS     GV+HSSNLCTEI L ++++E AVCNL S+NL  H 
Sbjct: 434 TLQETSHPWLVFKDAGNVRSLLP--GVIHSSNLCTEIFLPTTADEVAVCNLASVNLARHL 491

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D++ LA+T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L 
Sbjct: 492 GPAGIDWEALAATVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 551

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + YA PEA ++AD  +EFIS+HAI AS  LA ERG++ SF  S W +G  P+D++  L E
Sbjct: 552 LGYADPEAADLADRVLEFISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLEE 611

Query: 732 VRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++R++RL W+ ++ RV+  GMRN   +A+APTATI+ I G + S+DP Y N++
Sbjct: 612 ERGRPVTVDRSARLDWEGVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNVF 670

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG F  VN  LV EL+QR LW E +   +    G +  I  +P D++  + TA++
Sbjct: 671 SRQTLSGKFLEVNRVLVEELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAYQ 729

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + P   +E A+R QKW+D   S NL+L +     ++ +YR+AW  GLK+TYYL       
Sbjct: 730 VPPEAYLEIAARAQKWVDMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRMY 789

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            E ST++    +       D  +   S  
Sbjct: 790 AEPSTVRVNKARRKLRWNLDEPAPAGSSA 818


>gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha
           [Sulfurimonas autotrophica DSM 16294]
 gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas autotrophica DSM 16294]
          Length = 788

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/831 (34%), Positives = 437/831 (52%), Gaps = 104/831 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI 
Sbjct: 2   ITVIKRNGRTEPLDISKIQKYTSAAVKGLGNVSQSELEVDAQIHFRDGITSKEIQETLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  L  L  +V                 C   +YF +  +EG
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFLFNLYHQVNGF-----------TGYCKLEKYFEKGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +     + IE+PQ  FM
Sbjct: 111 ---RILLGLKEMYDLDELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA +E  +++ A++FYN++S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AIAMFLAQREENRQEWAIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A +E AML+K+ GG+G DWT VR +G++I G    + G IPFLK+ ND A+AV+Q G
Sbjct: 228 IFDAYKEMAMLSKFGGGIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHID+ +FLDL+KN+G++RRR HD+  + W+ D+FMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYLEPWHIDINDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  +L ++YG+EF   Y   E+     E  +  K+ A  LW+K+LT  FETG P++ 
Sbjct: 348 DPYDTRELTNMYGEEFNKRYLELEQD----ESIIKEKVKAKDLWKKILTSYFETGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS------------------ 604
           FKD  N  +P  H G++ SSNLCTEI  N+      +  +                    
Sbjct: 404 FKDNANRANPNDHYGIIRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDSG 463

Query: 605 ---------------------------------INLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +       +   + TA+R 
Sbjct: 464 ITKPAKKVTALDSLGGLPIFVVEKEKVDGSTAVCNLASINLSRVNTKKDIDRIVPTAIRC 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + +EK K++N   R+IGLG+MG    L      + S E  +  DE ME + 
Sbjct: 524 LDNVIDLNFYPVEKVKRTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEIMESVC 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++A+SAS +LA E+G+Y  F+GS W +G+ P D          +      S   WDEL+ 
Sbjct: 584 YNAVSASSDLAAEKGSYPEFEGSKWSRGIMPQDHANAEVVNLVDRGGLFASTYEWDELRA 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MA+APT++I+ + G +Q+I+P ++  + + N+SG   VV         
Sbjct: 644 KVKKQGMRNGYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVVVP------- 696

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  D    +  A++++   LI++A+ RQKWIDQ Q
Sbjct: 697 ------------------------NLSPDTWSYYTPAYDLNQTVLIKAAAIRQKWIDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SLN+++  D+ SG+ L+ IY  AW +GLK+TYYLRS+S   V     + ++
Sbjct: 733 SLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEMVSDVEDRSME 783


>gi|319955827|ref|YP_004167090.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 791

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/822 (36%), Positives = 438/822 (53%), Gaps = 104/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G +   +  +++     A  GL  VS   +  +      D +S  +++  LI 
Sbjct: 2   IKVVKRNGRVEPLDVSKIQKYTSAAVEGLDGVSQSELEVDAKLQFRDMISTEEIQLTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  +  +V                     +YF R  +EG
Sbjct: 62  TAVDKIDIDQPNWTFVAARLFLYDIYHKVSGF-----------TGYIHLRDYFDRGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L + +K ERD  F YLG++ LYDRY L    G  IE+PQ  FM
Sbjct: 111 ---RILLGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WHIDV +FLDL+KN+G++RRR HD+  A WI DLFMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYIEPWHIDVRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EV +L DLYG+EFE  Y   E+     E      +SA  LW+++L   FETG+P++ 
Sbjct: 348 DPYEVKELTDLYGEEFEKRYLELEQD----ESITKEVVSAKQLWKEVLRSYFETGNPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P +H GV+ SSNLCTEI  N+S     +  +     + +F   +       
Sbjct: 404 FKDAANRANPNRHAGVIRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDSG 463

Query: 617 --------------DYDK-------------------------------LASTIRTAVRV 631
                         D  K                               +A  + TA+R+
Sbjct: 464 VTKPAKKITALDTLDGKKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIRM 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + + K KK+N   R+IGLG+MG    L    I + S E     DE ME +S
Sbjct: 524 LDNVIDLNFYPLGKVKKTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESVS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS +LA E+G Y +F+GS W +G+FPID     A    +          W+ L++
Sbjct: 584 YYAIKASSDLALEKGCYPNFEGSDWSKGIFPIDKANPEACKLVDRGGLFGYTHDWEALRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 644 KVKNDGMRNGYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSGMIPVVVP------- 696

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  D    +   +E+D   L+ + + RQKWIDQ Q
Sbjct: 697 ------------------------NLNPDTWAYYTPCYELDQRLLVRAGAIRQKWIDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           SLN+++  D+ SG+ L+ IY +AW  GLK+TYYLRS+S  +V
Sbjct: 733 SLNIFIRLDKASGRYLNDIYMEAWKFGLKSTYYLRSQSPEAV 774



 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 26/84 (30%)

Query: 29  VQVIKRNGGVTSFDPSKI---SRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++V+KRNG V   D SKI   + A      AVEG        ++          V   LQ
Sbjct: 2   IKVVKRNGRVEPLDVSKIQKYTSA------AVEGLDGVSQSELE----------VDAKLQ 45

Query: 86  HNKSALIVHIEDIQDQVECSLMQS 109
                 ++  E+IQ     +L+++
Sbjct: 46  FR---DMISTEEIQ----LTLIKT 62


>gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor
           sp. SB155-2]
 gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor
           sp. SB155-2]
          Length = 789

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/833 (34%), Positives = 444/833 (53%), Gaps = 107/833 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +G +   +  +++   + AC GL+ VS   +  +      DG++  +++  LI 
Sbjct: 2   IRVVKRNGRVEPLDITKIQKYTKAACEGLEGVSQSELEVDAKIQFRDGITTEEIQQTLIR 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V AR  L  L  +V      +               +   Y E+G
Sbjct: 62  TAVDKIDVDRPNWSFVAARLFLYDLYHKVSGFTGYR---------------HLREYFEKG 106

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
             + R++      +DL  L + +K ERD  F YLG++ LYDRY L   N + IE+PQ  F
Sbjct: 107 EKEGRIIPGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQQLF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E + +  A  FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAVAMFLAQNELDCQSWAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G DW+ VR +G++I G    + G++PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+++F+DL+KN+G++RRR HD+  A WI DLFMKRV ++  WTL
Sbjct: 287 GTRKGAIAVYIEPWHMDIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E SDL +++G+EFE  Y  YE+     +  +  ++ A  LW+ +L   FETG P++
Sbjct: 347 FDPYETSDLTEVWGEEFEKRYLEYEQ----RDDILKEQVRAKELWKLILRSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGSINLLAHFANNQFDY 618
            FKD  N  +P  H G++ SSNLCTEI  N+      +      GS+         + D 
Sbjct: 403 CFKDNANKCNPNDHAGIIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIRIDT 462

Query: 619 ------------------------------------------------DKLASTIRTAVR 630
                                                           + +   +  A+R
Sbjct: 463 GIVKKAKKISSIDSINGKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + +EK KK+N   R+IGLG+MG    L    I + S E  +  DE ME I
Sbjct: 523 MLDNVIDLNFYPLEKVKKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDEL 749
           S++AI +S  LA E+G Y  F+ S W +G+ PID+    A+    +          W+EL
Sbjct: 583 SYNAIRSSSNLAVEKGVYPLFENSKWAKGILPIDTANKEAKKLTPDRGGLFGYIYDWNEL 642

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 643 REKVKRDGMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVVVP----- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                      +  D  + +  A+++D   LI++A+ RQKWIDQ
Sbjct: 698 --------------------------NLSPDTWQYYTPAYDLDQRLLIKAAAVRQKWIDQ 731

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            QS+N+++  D+ SG+ L  IY  AW +GLK+TYYLRS+S    +    + ++
Sbjct: 732 GQSVNIFIRLDKASGRYLHEIYTLAWKLGLKSTYYLRSQSPEVAQDIADRSME 784


>gi|224437766|ref|ZP_03658713.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
          Length = 792

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/823 (37%), Positives = 448/823 (54%), Gaps = 106/823 (12%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + ++  +G +   +  +++     A  GL+ V+   +  +      D ++  +++ 
Sbjct: 1   MLDTITVVKRNGRIEPLDVSKIQKHTSAAVEGLEGVTQSELEVDAKILFKDKITTEEIQQ 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCR 258
            LI ++   I+ + PN++ V AR  L  L  +V   T YKK +            +YF +
Sbjct: 61  TLIKTAVDKIDVDAPNWSFVAARLFLYDLYHKVTGWTGYKKLE------------DYFIQ 108

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
              EG   RLL      +DL +L + +K ERD  F YLG++ LYDRY L   N   IE+P
Sbjct: 109 GENEG---RLLRGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELP 165

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM LA  E +    AV+FY+++S F  +C+TPTL N+ T   QLSSCF+ + P
Sbjct: 166 QHMFMAIAMFLAQNENDCNAWAVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTP 225

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++ GIF A +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+AND A+A
Sbjct: 226 DNIEGIFDAYKEMALLSKYGGGIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIA 285

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+  YLE WH DV EF+DLRKN+G++RRR HD+  A WI DLFMKRV  N 
Sbjct: 286 VDQLGTRKGAIATYLEVWHNDVFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANE 345

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P +  +L +LYG+EFE  Y  YE+     E  +  ++ A  LW+K+LT  FE+G
Sbjct: 346 FWTLFDPYQCPELTELYGEEFEAKYLEYEQ----NEHILKHRVVAKDLWKKILTNYFESG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGS---------- 604
            P++ FKD  N  +P  H G++ SSNLCTEI  N++     V    + GS          
Sbjct: 402 LPFLCFKDNANRANPNGHAGIIRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEV 461

Query: 605 --------------------------------------INLLAHFANNQFDYDKLASTIR 626
                                                  NL +   +     + +   + 
Sbjct: 462 ELDNGVRKAANKITSVDSLLGKKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLP 521

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            A+R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +   DE 
Sbjct: 522 IAIRMLDNVIDLNFYPNRKVKVTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEV 581

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           ME ISF+AIS+S +LAQE+G Y  F GS W +G+ PID     A    +     + +  W
Sbjct: 582 MELISFYAISSSSDLAQEKGKYPQFDGSNWSKGIMPIDLASKEALKLVDRGGLFSQQCDW 641

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+K+VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  +++ N+SG   VV   L
Sbjct: 642 ESLRKKVKTQGIRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVVVPHL 701

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                            D    + +A++ID   LI++A+ RQKW
Sbjct: 702 -------------------------------SADTWNYYISAYDIDQTLLIKAAAVRQKW 730

Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           IDQ QS N+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 731 IDQGQSTNVFVRLDKASGKMLNDIYMLAWRLGLKSTYYLRSQS 773


>gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
 gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
          Length = 760

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/794 (31%), Positives = 409/794 (51%), Gaps = 45/794 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
             +   D     F+ K++   ++     L    +  + ++++  K +   +S S L   L
Sbjct: 2   FSVTKRDNAKQCFDQKKIVKTLQNLSVDLNKNLIDCEALVAQLKKTLVSNVSTSQLCVLL 61

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              S ++      YA +  R ++    ++V                       +   ++ 
Sbjct: 62  ARESASMAYIHDEYAMLAGRLMVIDNHKQVSDD--------------------YAVVVDN 101

Query: 263 GVKARLLHESMMDFDLVYL---ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
                L+        +  +      L Y  D+ ++Y G + L + Y   I G   E  Q 
Sbjct: 102 LYNQNLVSAQFYKSAIANMHTINATLNYNLDYDYKYFGFKTLENGYLKTIEGKVAERIQH 161

Query: 320 FFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
            +MRVA+ +   +T+   +   E YNL++   +  ++PTLF SG+ + QL+SCFL  +  
Sbjct: 162 MYMRVALTIHGNDTDDCIENVFETYNLMAHKMYTHASPTLFASGSCYAQLASCFLLNIKE 221

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ A+++K+ GG+G     VR  G+ I  TNG + G+   L+V N+    
Sbjct: 222 DSIVGIYETLRDCALISKFGGGIGLSVHNVRARGSFIESTNGTANGLEAMLRVYNNAVRH 281

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+QGGKRKGA+  Y+E WH D+ +FL+L++N G + R+  D+  A W+PDLFMKRV  + 
Sbjct: 282 VDQGGKRKGAMAIYVEPWHADIYDFLELKRNMGAEDRKARDLLYALWVPDLFMKRVEADG 341

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L  ++G EFE  Y  YE+          R+I A  L+R ++    ETG
Sbjct: 342 MWSLMCPRESPLLDTVHGSEFEQLYVAYEKCGK-----FVRQIKARDLFRTIVETQVETG 396

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD CN++S Q+H+G + +SNLC EI   S   E+AVCNL SI  N        +
Sbjct: 397 TPYMMYKDACNMKSNQKHLGTIKNSNLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGE 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           ++++ L    +  V+ L+ +IDIN + +  A+KSN  HR IG+G+ G      +L +PY 
Sbjct: 457 YNFEMLKYVTKIVVKNLNKIIDINYYPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A  +  +  E I F A+ AS ELA+  G + S+  S    G+   D           
Sbjct: 517 SDQAKVLNTKIAETIYFGALEASCELAKAYGVHDSYFSSPASLGILQYDLWNHTP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                TS   W +LKK +K  G+RNS C+A  PTAT A I G ++S +P   N+YV+  +
Sbjct: 572 -----TSMWDWTQLKKDIKQHGLRNSLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N +L ++L + +L++E M + +  ++GS+ NIE IP  +++++ T +E+    
Sbjct: 627 AGDFQVINKYLTDDLIKLNLYNEQMRNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKN 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI  A+ R  +IDQ+QS N++L +P+   L  I+   W  GLKT  YYLR++ A    K 
Sbjct: 687 LIGMAADRGPFIDQSQSFNIFLSQPTYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKF 746

Query: 915 TLKGVDGKLNAVPV 928
           T+       NA   
Sbjct: 747 TVDKSQIVCNACSS 760


>gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           hepaticus ATCC 51449]
 gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 791

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/836 (36%), Positives = 452/836 (54%), Gaps = 106/836 (12%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +   +G +   +  +++     A  GL+ VS   +  +      D ++  +++ 
Sbjct: 1   MLDTITVTKRNGRIEPLDIAKIQKHTYAAVEGLEGVSQSELEVDAKILFKDKITTEEIQQ 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCR 258
            LI ++   I+   PN++ V AR  L  L  +V   T YKK +            EYF +
Sbjct: 61  TLIKTAVDKIDVNTPNWSFVAARLFLYDLYHKVTGWTGYKKLE------------EYFEQ 108

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMP 317
              EG   +L+      +DL +L + +K ERD  F YLG++ LYDRY L  + +R IE+P
Sbjct: 109 GEREG---KLISGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNRPIELP 165

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q  FM +AM LA  E +    AV+FYN++S F  +C+TPTL N+ T   QLSSCF+ + P
Sbjct: 166 QHMFMAIAMFLAQNEKDCNAWAVKFYNMISLFEVICATPTLANARTTRHQLSSCFVGSTP 225

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++ GIF A +E A+L+KY GG+G D++ VRGLG+ I G    + GV+PFLK+AND A+A
Sbjct: 226 DNIEGIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKIANDVAIA 285

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+  YLE WH D+ +F+DLRKN+G++RRRTHD+  A WI DLFMKRV  N 
Sbjct: 286 VDQLGTRKGAIATYLEIWHNDIHDFIDLRKNSGEERRRTHDLFPAIWICDLFMKRVESNE 345

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P E  +L +LYG+ FE  Y  YE+     +  +  +I A  LW+K+LT  FE+G
Sbjct: 346 FWTLFDPYECPELTELYGEAFEAKYIEYEQ----SDKVLKSRILAKDLWKKILTNYFESG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGS---------- 604
            P++ FKD  N  +P  H G++ SSNLCTEI  N++     V      GS          
Sbjct: 402 LPFLCFKDNANRVNPNAHAGIIRSSNLCTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEV 461

Query: 605 --------------------------------------INLLAHFANNQFDYDKLASTIR 626
                                                  NL +   +     + +   + 
Sbjct: 462 KLDNGMCKRANKITSVDSINGRKVFITSRIAQGGATAVCNLASVNLSKINTKEDIERVLP 521

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            A+R+LDNVID+N +   K K +N  +RAIGLG+MG    L   HI + S E +   DE 
Sbjct: 522 IAIRMLDNVIDLNFYPNRKVKVTNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEI 581

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           ME +SF+AI +S  LAQE+G Y  F+GS W +G+FPID     A    +     + +  W
Sbjct: 582 MELVSFYAIESSANLAQEKGKYPQFEGSNWSKGIFPIDMANKEALKIVDRGGLFSQQCDW 641

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L+ +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L
Sbjct: 642 ESLRAKVKTQGMRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL 701

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                  D W                            + +A++I+   +I++A+ RQKW
Sbjct: 702 -----NLDTW--------------------------NYYVSAYDIEQTHIIKAAAVRQKW 730

Query: 867 IDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           IDQ QS N+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S  + E+   + V+
Sbjct: 731 IDQGQSTNIFVRLDKASGKMLNDIYTLAWKLGLKSTYYLRSQSPEAEEQVMDRSVE 786


>gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thermaerobacter marianensis DSM 12885]
 gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter marianensis DSM 12885]
          Length = 855

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/795 (40%), Positives = 453/795 (56%), Gaps = 51/795 (6%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + +EP   +V  R  L +L R VL      P           Y   F 
Sbjct: 74  LEELLVQAATQHLHREPRMERVAVRARLRQLYRCVLNDEAPSP---------AAYRAAFP 124

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI +GV    L E ++ FDL  LA  L+ ERD    ++GL  L DRY +    SR  +E
Sbjct: 125 AYIRKGVACGALDERLLAFDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLE 184

Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  FMRVAMGLAL E    +   A  FY+ +S+F ++ STPTLFN+GT H QLSSC+L
Sbjct: 185 TPQFLFMRVAMGLALAEEPGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYL 244

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  A ++   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   + 
Sbjct: 245 ADVHDSMDHILDAARDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDA 304

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++RV
Sbjct: 305 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 364

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLT 551
                W LF P  V +L +  G++F  AY    RQA+ G    + ++++ A  L+R++L 
Sbjct: 365 EAGEPWYLFDPAYVPELPEKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILA 424

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L ET HPW+ FKD  N+RS     GV+HSSNLCTE+ L ++++E AVCNL S+NL  H 
Sbjct: 425 TLQETSHPWLVFKDAGNLRSLLP--GVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHL 482

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D+D LA T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L 
Sbjct: 483 GPQGIDWDALAETVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 542

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             YA PEA ++ D  +EFIS+HAI AS  LA+ERG++ +F  S W QG  PID++  L  
Sbjct: 543 WGYADPEAADLVDRVLEFISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEA 602

Query: 732 VRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R E + ++RT+RL W+ ++ +V+  GMRN   MAIAPTATI+ I G + S+DP Y N++
Sbjct: 603 ERGEPVTVDRTARLDWESVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVF 661

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG F  +N  LV EL++R LW EA+   +    G +  I  +P D++  + TA++
Sbjct: 662 SRQTLSGKFLEINRVLVEELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQ 720

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + P   +E A+R QKW+D   S NL+L +     ++ +Y +AW  GLK+TYYL       
Sbjct: 721 VPPEAYLEVAARAQKWVDMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMY 780

Query: 911 VEKSTLKGVDGKL-----------------------------NAVPVTDPNSSTHSLGIP 941
            E ST++    +                               A P      +  +  + 
Sbjct: 781 AEPSTVRVNKARRKLRWNLDDGTVAATVAAPAKAAVTAGPGDQARPGASATGALEAAAVC 840

Query: 942 SSCTSDTE--CEVCQ 954
                D +  CE CQ
Sbjct: 841 RVRPDDPDLVCEACQ 855


>gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 35A]
          Length = 788

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/828 (37%), Positives = 442/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL DLYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTDLYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGSI-------------- 605
           FKD  N  +P  H G++ SSNLCTEI  N++     +      GSI              
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTDNH 463

Query: 606 ----------------------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|289548461|ref|YP_003473449.1| ribonucleoside-diphosphate reductase subunit alpha [Thermocrinis
           albus DSM 14484]
 gi|289182078|gb|ADC89322.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermocrinis
           albus DSM 14484]
          Length = 766

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/807 (34%), Positives = 425/807 (52%), Gaps = 81/807 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G     +  ++ ++++ AC+GL DV    +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRSGRREELDISKIRIVIDFACAGL-DVDPLELEMDAQIQFRDNITTREIQQLLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR----Y 259
           ++   +  E P++  V AR LL  L ++V      K +   + + +   PE F      Y
Sbjct: 60  TAAEKVSPETPDWTYVAARLLLYDLYKDVGHLRGYKVKDKINGKYRPYNPESFYHLIKTY 119

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318
            + G+    L E+    ++  LA  +K ERD  F Y G+++L DRY +    G  IE+PQ
Sbjct: 120 TDRGIYGGYLLENYTKEEIDQLAQYIKPERDLLFNYTGIKVLSDRYLVRDEEGRIIELPQ 179

Query: 319 AFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M +AM L + E ++E+     +FY++LS  +   +TPT+ N+   H QLSSCF+ TV
Sbjct: 180 EMYMLIAMTLGIAEKKEERLEWVKKFYDVLSQHYVSLATPTMMNARRTHTQLSSCFVLTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S GV+P +K+ ND  V
Sbjct: 240 DDDLYDIFDNVQKAAQISKFAGGLGIYLGKIRATGAPIRKFRGASSGVLPVVKIINDVMV 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH DV +FL+++ N GD+R++ HD++ A  IPDLFM+RV + 
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVLDFLEVKTNVGDERKKAHDIHPAVAIPDLFMERVRRR 359

Query: 497 AGWTLFSPD------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             WTL  P       +  +L D YGKEFE  Y   E++         R++ A  LW+++L
Sbjct: 360 EKWTLMDPYYCKKVKDGKNLEDFYGKEFEEVYLRLEKELPP---YAKREVDAWELWKRLL 416

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
           T++FETG P+I F+D  N  +P +H G+V+SSNLC EI  N S                 
Sbjct: 417 TVIFETGEPYIFFRDTANYLNPNKHCGMVYSSNLCMEIIQNMSVTTHEEDILEEDGRITH 476

Query: 594 ---SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              S +  VCNLGSINL   +       + LA  +   VR+LDNVI IN + I++A+ +N
Sbjct: 477 RKRSGDVVVCNLGSINLGLVYT-----AEDLAKVMPVLVRMLDNVISINFYAIKEAEYTN 531

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +RAIG+G+  +   L    I + S E ++ AD   E I+++AI AS +LA+ERG Y  
Sbjct: 532 KRYRAIGIGVSNYHYCLVKNGIQWESEEHIKFADALFERIAYYAIKASCDLAKERGKYPL 591

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS W +G+F     G   E   + ++   + L W  L K VK  G+RN   +A+ PT 
Sbjct: 592 FDGSDWSKGIFF----GRTPEENQQESVKNGNHLDWIGLAKEVKEHGLRNGYLLAVMPTG 647

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I G + S+DP +   Y + NMSG    V   +     ++  W              
Sbjct: 648 STSLIIGATASVDPIFAKFYKEENMSGILPQVPPEI-----KKYFWH------------- 689

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK--KLDFI 888
                         + +A+ ID  W I +A+ RQKWIDQ+QS NLY+D        L  +
Sbjct: 690 --------------YKSAYHIDQEWSIRAAAARQKWIDQSQSFNLYIDPEKIDGPTLSHL 735

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y+ A  +GLKT YY RS+S T +E+  
Sbjct: 736 YQLAHQLGLKTVYYCRSKSITDIEECE 762


>gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           hominis ATCC BAA-381]
 gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 793

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/822 (36%), Positives = 438/822 (53%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  ++     E+  GL +VS   +  +      D +S  +++  LI 
Sbjct: 1   MKVVKRNGRTEELDISKIRKYTRESIEGLDNVSLSELELDAKIQFRDMISTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V           T         EYF R  +EG
Sbjct: 61  TAVEKIDVDQPNWTFVAARLFLYDLYHKV-----------TTFNGYNSLREYFERGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
              ++L      +DL  L + +K +RD  F YLG++ LYDRY L  N +R IE+PQ  FM
Sbjct: 110 ---KILLGLKEKYDLDDLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + +  A +FY+LLS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNELDCQTWAKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSFKEMALLSKFGGGIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+ETWH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKR+ +NA WTLF
Sbjct: 287 TRKGAIATYIETWHMDIGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EVSDL D YG+EFE  Y  YE  +   +      I A  LW+K+LT  FE+G P++ 
Sbjct: 347 DPAEVSDLCDCYGEEFEKKYIEYENNSKISKSL----IPAKELWKKILTSCFESGMPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGSINLL----------- 608
           FKD  N  +P  H G++ SSNLCTEI  N+      +    N GSI L            
Sbjct: 403 FKDNANKANPNAHEGIIRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDITLDNG 462

Query: 609 ------------------AHFANNQFDY-------------------DKLASTIRTAVRV 631
                                    +D                    + +   +  A+R+
Sbjct: 463 LIKKGKKITSLDALDGKDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVI++N +   K K +N   RAIGLG+MG    L    IP+ S E  E  D+ ME IS
Sbjct: 523 LDNVINLNFYPHIKVKHTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIMENIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELK 750
           ++AI AS  LA E+G Y  F+GS W +G+ PID     A+       +       W  L+
Sbjct: 583 YNAILASSNLAIEKGKYPDFEGSNWSKGIMPIDLANEEAKALVKRGGLFDEDGCDWKYLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVVVP------ 696

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  D  +++  A+E+D   LI++A+ RQKWIDQ 
Sbjct: 697 -------------------------NLSPDTWQLYTPAYELDQRLLIKAAAVRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN+++  ++ S + L+ IY  AW +GLK+TYYLRS+S  S
Sbjct: 732 QSLNIFISLEKSSARILNDIYTLAWKLGLKSTYYLRSQSPDS 773



 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KRNG     D SKI             K    SI   D + +L+E  +   +Q   
Sbjct: 1   MKVVKRNGRTEELDISKIR------------KYTRESIEGLDNV-SLSELELDAKIQFR- 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYREERSDVRAAQSHSKS 137
              ++  E+IQ     +L+++   KI            R + LY            +S  
Sbjct: 47  --DMISTEEIQ----QTLIKTAVEKIDVDQPNWTFVAARLF-LYDLYHKVTTFNGYNSLR 99

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
           +     + +  +  G    ++   L+  ++
Sbjct: 100 EYFERGEKEGKILLGLKEKYDLDDLQDYIK 129


>gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 791

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/822 (36%), Positives = 431/822 (52%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTSEAVAGLDNVSLSELEVDAKIQFRDNITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +          K           EYF +  + G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYHKTTGFSGYNSLK-----------EYFEKGEKNG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +   N   IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLEDLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNELDSQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q G
Sbjct: 227 IFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR++QN  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL DLYG EFE  Y  YE+     +      + A  LW+K+LT  FETG P++ 
Sbjct: 347 DPADTPDLCDLYGDEFEKRYIEYEKDPHIAKS----SMLAKELWKKILTNYFETGMPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---AVCNLGSINLLAHFANNQFD-- 617
           FKD  N  +P  H G++ SSNLCTEI  N+         V + GS  L     +   D  
Sbjct: 403 FKDNANRANPNAHKGIIRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDGG 462

Query: 618 ----------------------------------------------YDKLASTIRTAVRV 631
                                                          + +A  +  A+R+
Sbjct: 463 YTKKAKKITALDRLDNKDIFIVEKGIKEGKTAVCNLASINLSKINSKEDIARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   R+IGLG+MG    L    I + S E +E  DE ME IS
Sbjct: 523 LDNVIDLNFYPHAKVKHTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDEVMENIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELK 750
           ++AI AS  LA E+GAY  F+GS W +G+FPID     A+   +   +   +   W++L+
Sbjct: 583 YNAIYASSNLAVEKGAYPDFEGSNWSKGIFPIDMANKNAKALINRGGLFDQNSCDWEKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V        
Sbjct: 643 AKVKEGGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPSVVP------ 696

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  +  + +  A+E+D   +I++ + RQKWIDQ 
Sbjct: 697 -------------------------NLNTETWQFYTPAYELDQKLIIKAGAVRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN+++  D+ SG+ L  IY  AW +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFMSLDKASGRYLSEIYTLAWELGVKSTYYLRSESPDS 773



 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 34/151 (22%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S ++   D + +L+E  V   +Q   
Sbjct: 1   MKVIKRNGRTEELDISKI------------KKYTSEAVAGLDNV-SLSELEVDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYR-EERSDVRAAQSHSK 136
           +   +  E+IQ     +L+++   KI            R + LY    ++   +  +  K
Sbjct: 48  N---ITTEEIQ----QTLIKTAVDKIDIDRPNWTFVAARLF-LYDLYHKTTGFSGYNSLK 99

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                  K   ++  G    ++ + L   ++
Sbjct: 100 EYFEKGEKNGRILL-GLKEKYDLEDLNAYIK 129


>gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
 gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
          Length = 772

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/817 (32%), Positives = 421/817 (51%), Gaps = 55/817 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIV----EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           +M+ +G     +   ++  +     +     + +    +  +    +YD + + + E   
Sbjct: 1   MMLRNGQSAVVDFDSIKSYLYCRSGDLTKNKEHIDFDHIADKIINGIYDNIDQDEFEDYS 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                +   K   Y+ + A   + KL  +                 +  Y +        
Sbjct: 61  ARVCASQTYKHYVYSDLAAMIAINKLHAKT----------------EDDYSKVVDILWRN 104

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFF 321
           GV     +   +  +   +   + Y+ D  + Y GL  +    Y + +N   +E PQ   
Sbjct: 105 GVLCDSFYWIAVK-NANVINAAISYDFDKQYTYFGLMTMIEGGYLMRVNNVTVERPQHML 163

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+ +  ++ E    A+E Y L+ S  F  ++PTLF+SG + PQ+SSC+L  +  D +
Sbjct: 164 MRVALQIHGEDIE---SAIESYRLMRSKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSI 220

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L + AM++K+ GG+G + + +R   + I  TNG + G+ P L+V N     V+Q
Sbjct: 221 NGIYKTLNDCAMISKHGGGIGLNVSQIRAANSKIKSTNGTAAGLGPALRVFNSMLRHVDQ 280

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGA+  Y+E WH D+  FLDL++N G +  +  D+  A W P LFMKRV+    W+
Sbjct: 281 GGKRKGALAVYIEPWHADIFTFLDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWS 340

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L+D YG+EFE  YE+YE Q    E     +I A+ L RK++ +  ETG P+
Sbjct: 341 LMCPDECPGLNDCYGEEFERLYESYETQGKFKE-----QILALDLHRKIIEIQVETGGPY 395

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618
           +  KD  N ++ Q+++GV+ +SNLC EI   S ++ETAVCNL SI  N  A+     FD+
Sbjct: 396 MLHKDNVNEKNNQKNLGVIRNSNLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDF 455

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           + L    R     L+ +ID N + +  A+ SN  HR IG+G+ G   A  +L++PY S +
Sbjct: 456 ESLYKVARVVTNNLNKIIDKNFYPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQ 515

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I + A+S S+ELA+  GAY S+ GS    G    D   +          
Sbjct: 516 ARELNRKISETIYYGALSQSIELAKLHGAYDSYNGSPASSGHLQFDLWNISQSN------ 569

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WDELK+++   G+RNS  +A  PTAT A I G ++S +P   NLYV+  +SG+
Sbjct: 570 ---DLWNWDELKRQMAIHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGE 626

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           + +VN  LV++L   +++   ++  +  ++GS+ NI+ IP D+K +  TA+EI    L+ 
Sbjct: 627 YQIVNQHLVDKLVDCNVYSTELMMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLN 686

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLNL++  PS K L  I+  +W  GLKT  YYLR++ A +  + T  
Sbjct: 687 MAADRGPYIDQSQSLNLFVANPSYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFT-- 744

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   VP + P +   +     +C     CE CQ
Sbjct: 745 --------VPSSSPFTKPSTDDAELTC--YVGCESCQ 771


>gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 52]
          Length = 788

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +R+IGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|42525857|ref|NP_970955.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           denticola ATCC 35405]
 gi|41815907|gb|AAS10836.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           denticola ATCC 35405]
          Length = 845

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/923 (30%), Positives = 455/923 (49%), Gaps = 117/923 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE    +    +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPHTD---LDTIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +V +E IQD VE +L++  ++   + ++LYR  R+  R ++                
Sbjct: 58  NGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMIS------------ 105

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
                   F++  ++ ++ E  +     + S  ++  +      + +SE++    LI +S
Sbjct: 106 ------RFFDTIEIQSVLTEIQNDFTSDEYSLNLLAHKFLSFRKENMSETESLAMLIKAS 159

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  ++ P++  + AR L+ + + ++ T + K+   + + +++ L          EG+ 
Sbjct: 160 VELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLE--------NEGLY 211

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRV 324
              + E+    +L   A+ +  ER+  F Y  L +L  RY +H + + + E PQ  F+ +
Sbjct: 212 GTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIHTHSNIVLESPQEMFLGI 271

Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+KE  ++ +    FY++ S+     +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 272 ALHLAMKEKLKRLEWVRRFYDMTSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLGV 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V    N+ W L
Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWHL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y++    +   +    R+I    L R +L    ET
Sbjct: 452 MCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKELVRLILKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +   H G+++ SNLCTEI+ N S                       
Sbjct: 508 GTPFAFNRDHANKTNTNPHKGMIYCSNLCTEISQNMSGIKHKNIEIKTEDGDTVVATTTI 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L     N   D  ++ + + +AVR LDNVID+N + I  A+ +N  +
Sbjct: 568 PGDFVVCNLASLVLGNIDVN---DEQEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSRY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G+YS F+G
Sbjct: 625 RSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                        W  L + VK+ GMRN+  +A+APT++ +
Sbjct: 685 SDWQTGEYFKK--------------RNYVDENWKALTEEVKSNGMRNAYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++         V   L  E                        
Sbjct: 731 IIAGTTAGVDPIMNKYFLEEKKGSLMPRVAPSLSPE------------------------ 766

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                     ++  A  I+  W I +A  RQ+ IDQAQS+NLY  +E +  K+  +Y +A
Sbjct: 767 -------TYWLYKNAHHIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLYVKA 819

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  GLK+ YY+RSRS    E  +
Sbjct: 820 WEEGLKSIYYVRSRSLEVEECES 842


>gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F32]
          Length = 788

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F30]
          Length = 788

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
 gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
          Length = 788

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTDNH 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI+ A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKVAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori v225d]
          Length = 788

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQSLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           acinonychis str. Sheeba]
 gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 788

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG+EFE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHTGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  SV LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI +A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSVETWNFYTSAYDIDAKDLIRAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRVENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 26695]
 gi|2500207|sp|P55982|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA)
           [Helicobacter pylori 26695]
          Length = 788

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           SLN++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SLNVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
 gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
          Length = 788

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYRMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F16]
          Length = 788

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNH 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori 51]
          Length = 788

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNH 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 780

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/824 (31%), Positives = 423/824 (51%), Gaps = 55/824 (6%)

Query: 141 IAPKLKIMMDDGTL-ISFNSKRLEMIV----EEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           +    ++++ +G   I  N   ++  +     +     + +    +  + +  +YD + E
Sbjct: 1   MFSSYQMILRNGRESIKVNMDYIKTYLYTRSGDLKKNKEYIDFNYIADKIFCGIYDNIHE 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            + E        +   K   Y+ +     + KL  +                 +  Y + 
Sbjct: 61  DEFEEYSANVCASQTYKHYVYSDLAVVIAVNKLHAKT----------------EDDYSKV 104

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRI 314
                + G+     +  ++   L  +   + Y+ D  + Y GL  L   +Y + ++   +
Sbjct: 105 VEILWKNGILCDSFYSIVIKH-LDSINASISYDFDKHYTYFGLMTLIEGKYLMRVDNIVV 163

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRVA+ +   + E    A+E Y L+ +  F  ++PTLF+SG + PQ+SSC+L 
Sbjct: 164 ERPQHMLMRVALQIHGDDIE---SAIESYRLMRAKLFTHASPTLFSSGMKMPQMSSCYLL 220

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            +  D + GI+  L + AM++K+ GG+G + T +R   + I  TNG + G+ P L+V N 
Sbjct: 221 NIQEDSINGIYKTLNDCAMISKHGGGIGLNVTQIRATNSKIESTNGTAAGLGPALRVFNS 280

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+QGGKRKGA+  Y+E WH DV  FLDL++N G +  +  D+  A W PDLFMKRV
Sbjct: 281 MLRHVDQGGKRKGAMTVYIEPWHADVFTFLDLKRNMGAEDMKARDLLFAMWTPDLFMKRV 340

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                W+L  PDE   L+D YG+EFE  YENYE +         ++ISA+ L RK++   
Sbjct: 341 KTGGKWSLMCPDECPGLNDCYGQEFEDLYENYEAEGK-----FKKQISALDLHRKIIETQ 395

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHF 611
            ETG P++ FKD  N ++ Q++ GV+ +SNLC EI   S + ETAVCNL SI  N  A+ 
Sbjct: 396 VETGAPYMMFKDHVNNKNNQKNEGVIRNSNLCAEIVQYSDNRETAVCNLASIAVNNFANK 455

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+  L +  R     L+ +ID+N + +  A+ SN  HR IG+G+ G      +L 
Sbjct: 456 QFKSFDFKSLYNVSRVVTNNLNKIIDLNFYPLASAQASNFRHRPIGIGIQGLADTFAILD 515

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY S EA ++  +  E I + A+S S+ELA+  G Y S+ GS    G+   D   +   
Sbjct: 516 MPYDSQEARDLNKKISETIYYGALSQSIELAKLHGTYDSYDGSPASCGLLQFDLWNIN-- 573

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         WDELK+ +   G+RNS  +A  PTAT A I G ++S +P   NLYV
Sbjct: 574 -------QSNDLWNWDELKREMAMHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYV 626

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG++ VVN  LV++L   +++   ++  +  ++GS+ NI+ IP ++K +  TA+EI
Sbjct: 627 RRVLSGEYQVVNQHLVDKLVDTNVYSTDIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEI 686

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ A+ R  +IDQ+QSLNL++  P+ K L  I+  +W  GLKT  YYLR++ A +
Sbjct: 687 KQKVVLDMAAERGPYIDQSQSLNLFVANPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAAN 746

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             + T+               N + +   +  +C     CE CQ
Sbjct: 747 TIQFTVPSSSAI---------NRANNEPDVVDACYI--GCESCQ 779


>gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
 gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
          Length = 788

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNYA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|253567023|ref|ZP_04844474.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|251944147|gb|EES84656.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
          Length = 839

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/925 (30%), Positives = 441/925 (47%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D T   ++                     +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEYSL--------------------VVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
           +    +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++
Sbjct: 204 LYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYL 263

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V +  N  W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMVKEDLNQPW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            LF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 444 YLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDT----RLSKRSISIKDIVRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET                 
Sbjct: 500 ETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N 
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQ 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F
Sbjct: 617 RYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W+ L  RV   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FGKRGYTSPEWNRLAARVAENGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +   DP  +  +++         V       L  +  W               
Sbjct: 723 TSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A+ +D  W I +A  RQ  IDQ+QSLNLY  +E + +++  +Y 
Sbjct: 764 ------------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWECGVKTVYYVRSKSLEVEECES 836


>gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
 gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
          Length = 788

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   +R+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|208434597|ref|YP_002266263.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
 gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
          Length = 788

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKYANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKVNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           SLN++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter
           pylori 908]
 gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter
           pylori 2018]
 gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter
           pylori 2017]
          Length = 788

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 440/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + ++ ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L  L I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           pylori B8]
 gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter
           pylori B8]
          Length = 788

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L N +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 83]
          Length = 788

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTDNH 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Gambia94/24]
          Length = 788

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPAG1]
 gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori HPAG1]
          Length = 788

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|265764335|ref|ZP_06092903.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
 gi|263256943|gb|EEZ28289.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
          Length = 839

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/925 (30%), Positives = 440/925 (47%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D T   ++                     +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEYSL--------------------VVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
           +    +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++
Sbjct: 204 LYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYL 263

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            LF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 444 YLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDT----RLSKRSISIKDIVRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET                 
Sbjct: 500 ETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N 
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQ 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F
Sbjct: 617 RYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASTDLAKEKGRYEYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W+ L  +V   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +   DP  +  +++         V       L  +  W               
Sbjct: 723 TSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A+ +D  W I +A  RQ  IDQ+QSLNLY  +E + +++  +Y 
Sbjct: 764 ------------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWECGVKTVYYVRSKSLEVEECES 836


>gi|15605686|ref|NP_213062.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
 gi|6225952|sp|O66503|RIR1_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2982838|gb|AAC06460.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
          Length = 801

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/846 (33%), Positives = 425/846 (50%), Gaps = 116/846 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++   G     +  ++ + ++ AC GL  V    + ++      DG++  +++  LI
Sbjct: 2   TMYVIKRSGRKEKLDINKIRIAIKFACEGLN-VDPLELEADAQIQFRDGITTKEIQQLLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLT----TVYKKPQKATHHEMQCLYPEYFCR 258
            ++   +  E P++    AR LL  L ++V      ++     K   +  +  Y  +   
Sbjct: 61  KTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYS-FVKE 119

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317
           Y+E+G+    L E+  + D   LAN +K ERD  F Y G++ILYDRY +    G  IE+P
Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179

Query: 318 QAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M +AM LA+ E  +E  K A +FY++LS      +TPTL N+     QLSSCF+ T
Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL+ IF  +++  M++K++GGLG     +R  GA I    G S GVIP +K+ NDT 
Sbjct: 240 VDDDLFDIFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTM 299

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+Q G RKG+    L+ WH D+ +FL+++ N GD+R++ HD++ A  IPDLFMKR+  
Sbjct: 300 TYVDQLGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKN 359

Query: 496 NAGWTLFSPD---------------------------------------EVSDLHDLYGK 516
              WTL  P                                        E   L D YG+
Sbjct: 360 REDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGE 419

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y   E           +K+++  LW+++LT+ FETG P+I F+D  N ++P +H 
Sbjct: 420 EFEKWYLELEE---NLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHT 476

Query: 577 GVVHSSNLCTEITLNSSSE---------------------ETAVCNLGSINLLAHFANNQ 615
           G+V+SSNLC EI    S                       +  VCNLGS+NL        
Sbjct: 477 GMVYSSNLCHEIVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLGKVHTE-- 534

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              +++   +   VR+LDNVI++N + I +A+ +N  +RAIG+G+  +   L    I + 
Sbjct: 535 ---EEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWE 591

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E ++ AD+  E I+F+A+  S+ELA+ERG Y  F GS W +G+      G   E  +E
Sbjct: 592 SEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILF----GRSVEEIEE 647

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            +    + LPW EL + +K  G+RN+  +A+ PT + + I G + SIDP +   Y + NM
Sbjct: 648 NSRQNGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENM 707

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG    V   +      R  W                            + TA+ ID  W
Sbjct: 708 SGILPQVPPEV-----DRFYWH---------------------------YKTAYTIDHEW 735

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGK--KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            I +A+ RQKWIDQAQSLNL++D  +    +L  +Y  AW +GLKT YYLRSRSA  +E+
Sbjct: 736 TIRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSAMDIEE 795

Query: 914 STLKGV 919
                V
Sbjct: 796 CEACSV 801



 Score = 38.6 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA--FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + VIKR+G     D +KI  AI  A   + V+        ++Q     +T + + +LL  
Sbjct: 3  MYVIKRSGRKEKLDINKIRIAIKFACEGLNVDPLELEADAQIQ-FRDGITTKEIQQLLIK 61

Query: 87 NKSALI 92
            +  +
Sbjct: 62 TAAEKV 67


>gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Sat464]
          Length = 788

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++  WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKYANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|53713985|ref|YP_099977.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis YCH46]
 gi|60682186|ref|YP_212330.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis NCTC 9343]
 gi|52216850|dbj|BAD49443.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis YCH46]
 gi|60493620|emb|CAH08409.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis NCTC 9343]
          Length = 839

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/925 (30%), Positives = 440/925 (47%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D T   ++                     +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEYSL--------------------VVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
           +    +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++
Sbjct: 204 LYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYL 263

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            LF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 444 YLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDT----RLSKRSISIKDIVRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET                 
Sbjct: 500 ETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N 
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQ 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F
Sbjct: 617 RYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W+ L  +V   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +   DP  +  +++         V       L  +  W               
Sbjct: 723 TSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A+ +D  W I +A  RQ  IDQ+QSLNLY  +E + +++  +Y 
Sbjct: 764 ------------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWECGVKTVYYVRSKSLEVEECES 836


>gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Cuz20]
          Length = 788

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/828 (37%), Positives = 441/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI-------------- 605
           FKD  N  +P  H G++ SSNLCTEI  N++     +      G+I              
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQLVTTDNH 463

Query: 606 ----------------------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNLNLE-- 700

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 701 -----------------------------TWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
 gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
          Length = 792

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/808 (38%), Positives = 435/808 (53%), Gaps = 61/808 (7%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
              E   +GL  V  + + ++T +          L+  L  ++   I +EP+Y+K+ AR 
Sbjct: 29  ARAEGWTAGLDGVELERLFAQTRERAPADADRETLDELLARTAVGWIVEEPDYSKLAARI 88

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY--- 280
           L   + RE  +                     F   +E   +  L +   ++F   +   
Sbjct: 89  LAGAIAREAASQGVTS----------------FLNSVETLHRLGLGNARALNFARAHAAT 132

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR 338
           L   L  E D  FEY GL+ ++DRY +    +R  +E PQ FFMRVA  LA+        
Sbjct: 133 LEAALDREGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAV----DPDE 188

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
           AV  Y L S   ++ S+PTLFN+GT   QLSSCFL   P D L  I+    + A L+K+S
Sbjct: 189 AVALYGLFSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKLSKFS 248

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  +  VR  G+ I  TNG S G++P+LK  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 249 GGIGLAYHRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLETWHA 308

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ EFL+LR NTG++  R H++N ANWIPD FM+RV  + GW+LF P  V    DLYG+ 
Sbjct: 309 DLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDLYGEA 368

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           F  AY   ER            + A  L+ +M+  L +TG+ W+ FKD CN    Q    
Sbjct: 369 FTRAYVEAERAGL-----AVATLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQTARP 423

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIR 626
              VH SNLCTEI   +S EETAVCNLGSINL  H          A+ + D+ KL  ++ 
Sbjct: 424 GRTVHLSNLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLGRSVT 483

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR LD VID+N + +E A KSN   R +GLG MG    L  L + + SP A E+A   
Sbjct: 484 LAVRALDRVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAARELARRV 543

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E + FHA+  S +LA++ G + +F  +    G    D  G          +     LPW
Sbjct: 544 AEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFDLWG----------VEPGEDLPW 593

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L++ V + G+RNS  +A+APTATIA+I G  + I+P+  NL  +  +SG+F  VN +L
Sbjct: 594 DTLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYL 653

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++EL++  LWDEAM + LK  +GS+  I R+P+ L++   TA+E+    LI+ A+ R  +
Sbjct: 654 IDELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPF 713

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ+QSLNL+++ P   +L  +Y  AW  GLKTTYYLRSR A+ + K+T+          
Sbjct: 714 IDQSQSLNLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPASGIAKATVD--------- 764

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           P         +  +  S  +   CE CQ
Sbjct: 765 PANAKPKQRSAEALACSLENPEACEACQ 792


>gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella
           succinogenes DSM 1740]
 gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella
           succinogenes]
          Length = 788

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/831 (35%), Positives = 437/831 (52%), Gaps = 104/831 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++   G +   +  +++     A  GL++VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVIKRSGRVEPLDVTKIQKFTHSAVLGLENVSQSELEVDAKIQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + P +  V AR  L  L  +V                     +YF R   EG
Sbjct: 62  TAVDKIDVDAPEWTYVAARLFLYDLYHKV-----------NRFTGYGKLKDYFERGESEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R++      FDL +L   +  ERD  F YLG++ LYDRY +   +   IE+PQ  FM
Sbjct: 111 ---RIIKGLRGKFDLDFLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  + AV+FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEREPNEWAVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+ ND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKYGGGIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH D+ +F+DL+KN+G++RRR HD+  A WIPDLFMKRV ++  WTL 
Sbjct: 288 TRKGAISVYLEPWHTDIFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTLL 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +L+G+ FE  Y  YE      E  +   I A  LW+K+LT  FE G P++ 
Sbjct: 348 DPHECQDLTNLHGEAFEKRYLEYECM----EGIIKETIRAKELWKKVLTSYFEIGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGS--------------- 604
           FKD  N  +P  H G++ SSNLCTEI  N+      +      GS               
Sbjct: 404 FKDNANRLNPNAHKGIIRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDTG 463

Query: 605 ---------------------------------INLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + +   +  AVR+
Sbjct: 464 VEKRANKITSMDSLQGKKVFIAERIAQEGKTAVCNLASINLSKIHTQEDIERVVPIAVRM 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +  +K K++N   RAIGLG+MG    L    I + S E +E  DE ME +S
Sbjct: 524 LDNVIDLNFYPNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEIMEQVS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI AS  LA+E+G Y  F+GS W +G+FPID     A+   +      +   WD L++
Sbjct: 584 YHAIKASSTLAKEKGIYPDFEGSNWSKGIFPIDLANSEAKKLVDRGGLFGTDCDWDSLRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E  
Sbjct: 644 QVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNLSLE-- 701

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A+++D   LI++AS RQKWIDQ Q
Sbjct: 702 -----------------------------TWNFYQSAYDLDQNLLIKAASIRQKWIDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           S N+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S  + E +  + ++
Sbjct: 733 STNIFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQSPQAEENTMDRSIE 783


>gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 789

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/750 (42%), Positives = 433/750 (57%), Gaps = 16/750 (2%)

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  EP  +++  R LL    RE L T    P           Y + F RY++  ++   L
Sbjct: 51  IHLEPAASQIAVRVLLRHNYREALGTPTPSP---------AAYRQGFIRYVQNAIREGYL 101

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMG 327
              + D DL  LA  L+ ERD    Y GL  L DRY +    +G  +E PQ  FMRVAMG
Sbjct: 102 DPRLGDLDLEALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMG 161

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E E       FY  +S    + STPTLFN+GT HPQLSSC+L  + D L  I   L
Sbjct: 162 LALAEAEPLAWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGL 221

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           Q    LAKY+GG+G   T +R  GA + G +G S GVIPFL V +    AVNQGG+R+G 
Sbjct: 222 QTFGKLAKYAGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGT 281

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           + AYLE WH++VE FLDLRKNTGD   R   +NTA ++PD FM+RV +   W LF P   
Sbjct: 282 MAAYLEPWHLEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVA 341

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKV--FRKISAVALWRKMLTMLFETGHPWITFKD 565
            DL + +G+ F+ AY  Y + A+ G++    ++K+ A  L+R++L +L ET HPW+ FKD
Sbjct: 342 PDLAETWGRAFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKD 401

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N RS    VG+VHSSNLCTEI L +S EE AVCNL S+NL A+    +  +  LA + 
Sbjct: 402 AGNARSALAAVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSA 461

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVID N +   +A++SN  +R +GLG+MGF      L + Y  PEA  + D 
Sbjct: 462 HLAMRMLDNVIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDR 521

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744
             E++S+HAI AS  LA+ERGA+  F  + W QG  P+D++  L  +R   + ++R +RL
Sbjct: 522 ITEYVSYHAIQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAPVEVSREARL 581

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+  V+  GMRNS  MAIAPTA+I+ I G + S+DP Y N++ ++N+SG F  VN 
Sbjct: 582 DWDALRPLVQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNP 640

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            LV  LK+  LW+E          G +  IE IP+ L++   TA++I P   IE A+R Q
Sbjct: 641 VLVEALKRAGLWEEVRERI-VEERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQ 699

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KW+D   S NLYL E S + ++ +Y +AW  GLK+TYYL        E+ST++    +  
Sbjct: 700 KWVDMGVSRNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQSTVRVNKARKR 759

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                +  + T         + D  CE CQ
Sbjct: 760 PKWRLEEMAFTPERPEIQDPSEDALCEGCQ 789


>gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori B38]
 gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori B38]
          Length = 788

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/828 (36%), Positives = 440/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENTEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   +R+
Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIIRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           SLN++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori India7]
          Length = 788

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|325475466|gb|EGC78647.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 845

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/924 (30%), Positives = 452/924 (48%), Gaps = 119/924 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE         +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPHKD---LDIIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
           S  +V +E IQD VE +L++  ++   + ++LYR  R+  R ++           I P L
Sbjct: 58  SGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISRFFDTIEIQPIL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             + +D T   ++                     ++  +      + +SE++    LI +
Sbjct: 118 TEIQNDFTSDEYSLN-------------------LLAHKFLSFRKENMSETESLAMLIKA 158

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  L  ++ P++  + AR L+ + + ++ T + K+   + + +++ L          EG+
Sbjct: 159 SVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLE--------NEGL 210

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
               + E+    +L   A+ +  ER+  F Y  L +L  RY +  +  + +E PQ  F+ 
Sbjct: 211 YGTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIRTHSNTVLESPQEMFLG 270

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+KE   + +    FY++ SS     +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 271 IALHLAMKEKSNRLEWVRRFYDMTSSLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDG 330

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G
Sbjct: 331 IYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLG 390

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V    N+ W 
Sbjct: 391 VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWH 450

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D YG+E+E  Y++    +   +    R+I    L R +L    E
Sbjct: 451 LMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKDLVRLILKSAVE 506

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------------- 594
           TG P+   +D  N  +P  H G+++ SNLCTEI+ N S                      
Sbjct: 507 TGTPFAFNRDHANKTNPNPHKGMIYCSNLCTEISQNMSEIKHKTIEIKTENGDTVVATTT 566

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S+ L     N   D  ++ + + +AVR LDNVID+N + I  A+ +N  
Sbjct: 567 IPGDFVVCNLASLVLGNIDVN---DEKEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSR 623

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G+YS F+
Sbjct: 624 YRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFE 683

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S W  G +      +  +              W  L + VK+ GMRN+  +A+APT++ 
Sbjct: 684 RSDWQTGEYFKKRNYVDEK--------------WKALAEEVKSNGMRNAYLLAVAPTSST 729

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP     +++         V   L  E                       
Sbjct: 730 SIIAGTTAGVDPIMNKYFLEEKKGSLMPRVAPSLSPE----------------------- 766

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      ++  A  I+  W I +A  RQ+ IDQAQS+NLY  +E +  K+  +Y +
Sbjct: 767 --------TYWLYKNAHNIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLYVK 818

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+K+ YY+RSRS    E  +
Sbjct: 819 AWEEGVKSIYYVRSRSLEVEECES 842


>gi|288817345|ref|YP_003431692.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288786744|dbj|BAI68491.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 767

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/808 (34%), Positives = 426/808 (52%), Gaps = 82/808 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G     +  ++ ++++ AC GL+ V    + ++      +G+S  +++  LI 
Sbjct: 1   MYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--- 260
           ++   +  E P++  V AR LL  L ++V      K +   +   +   PE F   +   
Sbjct: 60  TAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNY 119

Query: 261 -EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318
            E+G+    L       D   LA+ +K +RD  F Y G+++LYDRY +    G+ IE+PQ
Sbjct: 120 AEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQ 179

Query: 319 AFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M ++M LAL E ++E  K    FY+L+S      +TPTL N+   H QLSSCF+ TV
Sbjct: 180 EMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+   ++K++GGLG     VR  G+ I    G S GV+P +K+ ND  V
Sbjct: 240 DDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMV 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH DV +FL+++ N GD+R++ HD++ A  IPD+FMKR+   
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNR 359

Query: 497 AGWTLFSPD------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             WTL  P       +  +L D YG+EFE  Y+  ER+         +++ A  LW+++L
Sbjct: 360 EKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRLERELPPN---AKKEVDAFELWKRLL 416

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
           T++FETG P+I F+D  N  +P +H GVV+SSNLC EI  N S                 
Sbjct: 417 TVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIV 476

Query: 594 ----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               S +  VCNLGSINL   +       + +   +   VR+LDNVI IN + I++A+ +
Sbjct: 477 HRKKSGDVVVCNLGSINLGKVYTK-----EDMERVVPLLVRMLDNVISINYYAIKEAEYT 531

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +RAIG+G+  +   L    I + S E ++ A+   E I+++AI  S+ELA+ERG Y 
Sbjct: 532 NRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYP 591

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W +GVF     G  AE    ++    + L W EL + VKT G+RN+  +A+ PT
Sbjct: 592 LFEGSDWSKGVFF----GRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPT 647

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + + I G + S+DP +   Y + NMSG    V   +      R  W             
Sbjct: 648 GSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPPEI-----DRYFWH------------ 690

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK--KLDF 887
                          + +A+ ID  W+I +AS RQKWIDQAQSLNL++D        L  
Sbjct: 691 ---------------YKSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSK 735

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +Y  +W +GLKT YY RS+S T +E+  
Sbjct: 736 LYELSWELGLKTVYYCRSKSLTEIEECE 763


>gi|15290502|gb|AAK92209.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis 638R]
 gi|301163664|emb|CBW23218.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis 638R]
          Length = 839

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/925 (29%), Positives = 440/925 (47%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   +   D  +   L
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D T   ++                     +VL E +       +  S+   ALI 
Sbjct: 112 KEIQKDFTTHEYSL--------------------VVLYEKFSGFCKQEMPHSERLAALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
           +    +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++
Sbjct: 204 LYGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYL 263

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ T+PD L 
Sbjct: 264 GIALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTIPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            LF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 444 YLFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDT----RLSKRSISIKDIVRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N ++ ET                 
Sbjct: 500 ETGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N 
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQ 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F
Sbjct: 617 RYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W+ L  +V   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +   DP  +  +++         V       L  +  W               
Sbjct: 723 TSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A+ +D  W I +A  RQ  IDQ+QSLNLY  +E + +++  +Y 
Sbjct: 764 ------------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWECGVKTVYYVRSKSLEVEECES 836


>gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Lithuania75]
          Length = 788

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYADGTIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori J99]
 gi|7388069|sp|Q9ZLF9|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
           pylori J99]
          Length = 788

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           concisus 13826]
 gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           concisus 13826]
          Length = 791

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/868 (34%), Positives = 440/868 (50%), Gaps = 135/868 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTNEAVLGLNNVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+ +G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLFDLYHKVTGFNGYN---------------HLKDYLAKG 105

Query: 264 VK-ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            K  R++      +DL  L   +K ERD  F YLG++ LYDRY +   +G  IE+PQ  F
Sbjct: 106 EKVGRIIPGLKEKYDLEDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDSQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+L
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +VSDL DLYG+EFE  Y  YE      E      I A  LW+K+LT  FETG P++
Sbjct: 346 FDPAQVSDLCDLYGEEFEKRYLEYEND----ESIQKNTILAKELWKKILTSYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N++     +                      
Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDS 461

Query: 602 -----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L S+                    NL +   +     + +   +  A+R
Sbjct: 462 GITKKAKKLSALDSLKGKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L   ++ + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDE 748
           S++AI  S  LA E+G Y  F+GS W +G+ PID+    A+    D+  +   +   WD+
Sbjct: 582 SYNAIYTSSNLAVEKGIYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDENVCDWDK 641

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V      
Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNVVP---- 697

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                       +  D  + +  A+E+D   LI++ + RQKWID
Sbjct: 698 ---------------------------NLSPDTWQFYTPAYELDQRILIKAGAIRQKWID 730

Query: 869 QAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           Q QSLN+++  D+ SG  L  IY  AW +GLK+TYYLRS S                   
Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES------------------- 771

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     S  +        ECE CQ
Sbjct: 772 --------PDSEKLNDVADRSIECEGCQ 791



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 32/150 (21%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  + ++   + + +L+E  V   +Q   
Sbjct: 1   MKVIKRNGRTEELDISKI------------KKYTNEAVLGLNNV-SLSELEVDAKIQFR- 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYREERSDVRAAQSHSKS 137
              ++  E+IQ     +L+++   KI            R ++     +       +H K 
Sbjct: 47  --DMITTEEIQ----QTLIKTAVDKIDIDRPNWTFVAARLFLFDLYHKVTGFNGYNHLKD 100

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                 K+  ++  G    ++ + L   ++
Sbjct: 101 YLAKGEKVGRIIP-GLKEKYDLEDLNAYIK 129


>gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
           NBC37-1]
 gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp.
           NBC37-1]
          Length = 789

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/821 (36%), Positives = 443/821 (53%), Gaps = 103/821 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +G + + +  +++     A  GL DVS   +  +      D ++  +++T LI 
Sbjct: 2   VRVVKRNGRVETLDVSKIQKYTSAAVEGLDDVSQSELEVDAKLQFRDMITSEEIQTTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  +  +          +           EYF R  +EG
Sbjct: 62  TAVDKIDIDRPNWTFVAARLFLYDIYHKATGFTGYNHLR-----------EYFERGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R++      +DL  L + +K ERD  F YLGL+ LYDRY L   NG  IE+PQ  FM
Sbjct: 111 ---RIVLGLKDKYDLDDLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 GVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q G
Sbjct: 228 IFDGYKEMALLSKFGGGIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEPWHVDVRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EV++L +LYG+EFE  Y   E             ISA  LW+++L   FETG+P++T
Sbjct: 348 DPFEVTELTELYGEEFEKRYVELE---HSDADITREVISAKGLWKEILRSYFETGNPFLT 404

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA---VCNLGSI-------------- 605
           FKD  N  +P +HVG++ SSNLCTEI  N++            GSI              
Sbjct: 405 FKDAANRANPNKHVGIIRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDNG 464

Query: 606 ----------------------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + +A  + TAVR+
Sbjct: 465 TTKPAKKVTALDSLGGKQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVRM 524

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + + K K++N   R+IGLG+MG    L    I + S +     DE ME +S
Sbjct: 525 LDNVIDLNFYPLAKVKRTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESVS 584

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS  LA E+G Y +F GS W +G+FPID     A    +          W  L++
Sbjct: 585 YYAIEASSNLALEKGKYPTFDGSDWSKGIFPIDKANENACKLVDRGGLFGYSHDWTALRE 644

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VKT GMRN   MA+APT++I+ + G +Q+I+P Y+  + + N+SG   V          
Sbjct: 645 KVKTDGMRNGYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVTAP------- 697

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                   ++  D  + +  A+++D   LI++ + RQKWIDQ Q
Sbjct: 698 ------------------------KLSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQGQ 733

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           SLN+++  D+ SGK L+ IY  AW  GLK+TYYLRS+S  S
Sbjct: 734 SLNIFITLDKASGKYLNEIYMNAWKFGLKSTYYLRSQSPES 774


>gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F57]
          Length = 788

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/828 (36%), Positives = 438/828 (52%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ L+DRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTDNN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++I+   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSAETWNFYTSAYDINAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SouthAfrica7]
          Length = 788

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L + +K ERDF F YLG++ L+DRY L   N   IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG+EFE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLSELYGQEFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   Q       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTDSN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLSVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 779


>gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia
           profundicola AmH]
 gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia
           profundicola AmH]
          Length = 812

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/858 (34%), Positives = 440/858 (51%), Gaps = 129/858 (15%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           + P + ++  +G     +  ++    + AC GL+ V    +  +      DG++ ++++ 
Sbjct: 1   MYPGITVIKRNGRREPLDISKIRKYTKAACEGLEGVDYTELELDAKLQFRDGITTAEIQD 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI ++   I+ + PN+  V AR  L  L   V                      +   Y
Sbjct: 61  TLIKTAVDKIDIDRPNWNYVAARLFLYDLYHRVTGFTGYN---------------HLKEY 105

Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
            ++G +A R+L      FDL  L   LK ERD  F YLG++ LYDRY +   NG  IE+P
Sbjct: 106 FQKGEEAGRILLGLKEKFDLDDLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELP 165

Query: 318 QAFFMRVAMGLALKETEKEK-------------------RAVEFYNLLSSFHFMCSTPTL 358
           Q  FM VAM LA  ET  E                     A +FY+++S F  M +TPTL
Sbjct: 166 QQLFMGVAMFLAQNETNYESIPEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTL 225

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N+ T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D + +R LG+ I    
Sbjct: 226 SNARTTRHQLSSCYVGSMNDNIEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHK 285

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + GVIP+LK+ ND A+AV+Q G RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD
Sbjct: 286 NAAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHD 345

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A WI DLFMKRV ++A WTLF P EV DL DLYG+EFE  Y  YE   +  +     
Sbjct: 346 LFPALWISDLFMKRVQEDALWTLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----E 401

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI  N+      
Sbjct: 402 TIKAKELWKKILLEYYETGNPFLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYK 461

Query: 599 VC---NLGSINLLAHFANNQFDY------------------------------------- 618
           V      GS N+     +   ++                                     
Sbjct: 462 VKVTFEDGSFNMYDEEEDVTVEHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAV 521

Query: 619 --------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                         +K+   +  A+R+LDNVID+N + + K K +N  +RAIGLG MG  
Sbjct: 522 CNLASVNLSKVNTPEKIKEVVPVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEA 581

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    I + S E +++ DE  E IS++AI  S EL++E+G Y  F+GS W +G+ PID
Sbjct: 582 QMLAEKQIFWGSEEHLKLIDEVFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPID 641

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           S    A+   E  +    +  W+ L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P
Sbjct: 642 SANEEAKRLVERDLFSAMQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEP 700

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y+  + + N+SG   VV                                  +  +    
Sbjct: 701 VYKRKWYEENLSGLIPVVVP-------------------------------NLSAETYMF 729

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYY 902
           +  A+E+D   L+++A+ RQKW+DQ QSLN++   D+ SG+ L+ IY   W +GLK+ YY
Sbjct: 730 YTPAYELDQTVLVKAAAIRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYY 789

Query: 903 LRSRSATSVEKSTLKGVD 920
           LRS+S    E+   + ++
Sbjct: 790 LRSQSPEVQEEVMDRSIE 807


>gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori P12]
 gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori P12]
          Length = 788

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/828 (36%), Positives = 439/828 (53%), Gaps = 105/828 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI 
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN++ V +R  L  L  +V      +  K           EYF    E+G
Sbjct: 62  TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFENAEEKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  FM
Sbjct: 111 ---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 SIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q G
Sbjct: 228 IFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WTLF
Sbjct: 288 TRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P++ 
Sbjct: 348 DPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEAGLPFLA 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF------ 616
           FKD  N  +P  H G++ SSNLCTEI  N++     +    +   +  F   +       
Sbjct: 404 FKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDDN 463

Query: 617 ---------------------------------------------DYDKLASTIRTAVRV 631
                                                          + +   +   VR+
Sbjct: 464 ITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRL 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME IS
Sbjct: 524 LDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           +HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L++
Sbjct: 584 YHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGLRE 642

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 643 KVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP------- 695

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    + +A++ID   LI++A+ RQKWIDQ Q
Sbjct: 696 ------------------------NLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQ 731

Query: 872 SLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           S+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  +KS L 
Sbjct: 732 SINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDKKSVLD 779


>gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 813

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/859 (34%), Positives = 446/859 (51%), Gaps = 130/859 (15%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           + P + ++  DG     +  ++    + AC GL  V    +  +      DG++  +++ 
Sbjct: 1   MYPGITVIKRDGRREPLDISKIRKYTKAACEGLDGVDYSELELDAKLQFRDGITTEEIQD 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI ++   I+ + PN+  V AR  L  L   V                      +   Y
Sbjct: 61  TLIKTAVDKIDIDKPNWNFVAARLFLYDLYHRVTGYTGYN---------------HLREY 105

Query: 260 IEEGVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
            E G +A R+L      +DL  L + +K ERD  F YLG++ LYDRY +     + IE+P
Sbjct: 106 FERGERAGRILPGLKEKYDLDDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELP 165

Query: 318 QAFFMRVAMGLALKET--------EKEK------------RAVEFYNLLSSFHFMCSTPT 357
           Q  FM VAM LA  ET        +K+K             A +FY+++S F  M +TPT
Sbjct: 166 QQLFMGVAMFLAQNETNPNSIPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPT 225

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+ T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D++ +R LG+ I   
Sbjct: 226 LSNARTTRHQLSSCYVGSMNDNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNH 285

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
              + GVIP+LK+ ND A+AV+Q G RKGA+  Y+E WH+D+ +FLDL+KN+G++RRR H
Sbjct: 286 KNAAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAH 345

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           D+  A WIPDLFMKRV ++  WTLF P E  DL +LYG+EFE  Y  YE      E    
Sbjct: 346 DLFPALWIPDLFMKRVEEDGLWTLFDPYETGDLTNLYGEEFEKKYIEYE----NREDITK 401

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           RK+ A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI  N+     
Sbjct: 402 RKVKAKELWKKILLEYYETGNPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHY 461

Query: 598 AV-------------------CNLGSINLLA--------HFANNQ---------FD---- 617
            V                    +LG + ++         H+ N +         FD    
Sbjct: 462 KVKVTFEDGSEEYFNEDDDVKVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTA 521

Query: 618 --------------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                          +K+A  +  A+R+LDNVID+N + + K K +N  +RAIGLG MG 
Sbjct: 522 VCNLASVNLSKVNTPEKIAEVVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGE 581

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +++ DE  E IS+ AI  S ELA+E+GAY  F+GS W +G+ PI
Sbjct: 582 AQLLAERQIFWGSDEHLKLIDEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPI 641

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+    A+   E  +    +  W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+
Sbjct: 642 DTANEEAKKLVERDLFSAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIE 700

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P Y+  + + N+SG   VV                                  +  D   
Sbjct: 701 PVYKRKWYEENLSGLIPVVVP-------------------------------NLSADTYM 729

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTY 901
            +  A+E+D   L+++A+ RQKWIDQ QSLN++   D+ SG+ L+ IY   W +GLK+ Y
Sbjct: 730 FYTPAYELDQRILVKAAAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFY 789

Query: 902 YLRSRSATSVEKSTLKGVD 920
           YLRS+S    E+   + V+
Sbjct: 790 YLRSQSPEVKEEVMDRSVE 808



 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 46/180 (25%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            G+ VIKR+G     D SKI +   KA  A EG        ++             L   
Sbjct: 3   PGITVIKRDGRREPLDISKIRK-YTKA--ACEGLDGVDYSELE-------------LDAK 46

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYREERSDVRAAQSHS 135
            +    +  E+IQD    +L+++   KI            R + LY           +  
Sbjct: 47  LQFRDGITTEEIQD----TLIKTAVDKIDIDKPNWNFVAARLF-LYDLYH-----RVTGY 96

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
                +    +     G ++    ++           L D++S I      +  Y G+  
Sbjct: 97  TGYNHLREYFERGERAGRILPGLKEK---------YDLDDLNSYIKPERDLQFTYLGIKT 147


>gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 731

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/759 (39%), Positives = 431/759 (56%), Gaps = 53/759 (6%)

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             I  +   +  +P  +++ A  L E +  E      +   ++           +    +
Sbjct: 21  LAIEEAAARVITDPENSRIAAGLLAELIADEAAGHGVRAFSESVAAT-------HAAGLV 73

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
           ++G+ A +   +        L   +  + D  FEY GL+ +YDRY L    +R  +E PQ
Sbjct: 74  QDGLAAFVAAHAA------ELDALVAQDADDRFEYFGLRTVYDRYLLRHPRTRQVLERPQ 127

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            FF+RVA GL    +E  + A E Y L+S+  ++ S+PTLFNSG+R PQLSSCFL   P 
Sbjct: 128 HFFLRVACGL----SETVEEAAELYALMSTLSYLPSSPTLFNSGSRRPQLSSCFLLDSPR 183

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I+    + A L+KY+GG+G  WT VR  G+ I GTNG S G++P+L+  + +  A
Sbjct: 184 DELEAIYERYGQVARLSKYAGGIGIAWTRVRSRGSLIRGTNGHSNGIVPWLRTLDSSVAA 243

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+RKGA C YLE+WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV  + 
Sbjct: 244 VNQGGRRKGAACVYLESWHADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADG 303

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P EV  L DLYG  FE A      +A   E +  ++I A +L+ +M+  L +TG
Sbjct: 304 VWSLFDPKEVPHLTDLYGAAFEEA-----YRAAEAEGRYVKQIPARSLYGRMMRTLAQTG 358

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD  N  S Q  +   V+H SNLCTEI   ++  ETAVCNLGSINL AH     
Sbjct: 359 NGWMTFKDAANRTSNQTARPENVIHLSNLCTEILEVTNDAETAVCNLGSINLAAHLDGRD 418

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+ +L  T+RTAVR LD  ID+  +   +A  +N   R IGLG+MG    L  L +P+ 
Sbjct: 419 VDWTRLRRTVRTAVRFLDRTIDLGFYPTPEAGTANRKWRPIGLGVMGLADVLFALRLPFD 478

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SP+A+E++    E I+  A + S +LA ERG + S+  +    GV   D  G        
Sbjct: 479 SPQALELSTRISEEIALAAYATSSDLAVERGRHPSYDDTRAAAGVLHPDHYGAARSP--- 535

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L+ R+   G+RNS  +AIAPTATIA+I G  + I+P   N++ +  +
Sbjct: 536 ---------EWAALRDRIAETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETL 586

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  VN +LV +L+ R LW   +   +K  DGS+ ++  +P+DLK ++ TA+E+    
Sbjct: 587 SGEFLQVNRYLVRDLQARGLWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKA 646

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR AT + ++T
Sbjct: 647 LIDLAAARTPYIDQSQSLNLFMATPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIAQTT 706

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +        A  V DP        +  S  +   C+ CQ
Sbjct: 707 V--------AQAVPDPE------AVACSLENPEYCDACQ 731


>gi|308750952|gb|ADO44435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobacter thermophilus TK-6]
          Length = 792

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/833 (33%), Positives = 433/833 (51%), Gaps = 84/833 (10%)

Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           +YR  R+  +       +       + +    G     +  ++ ++++ AC GL+ V   
Sbjct: 3   IYR--RAGYKYTSHRLLTAYERERAMYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPL 59

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYK 238
            + ++      +G+S  +++  LI ++   +  E P++  V AR LL  L ++V      
Sbjct: 60  ELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGY 119

Query: 239 KPQKATHHEMQCLYPEYFCRYI----EEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
           K +   +   +   PE F   +    E+G+    L       D   LA+ +K +RD  F 
Sbjct: 120 KVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFN 179

Query: 295 YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHF 351
           Y G+++LYDRY +    G+ IE+PQ  +M ++M LAL E ++E  K    FY+L+S    
Sbjct: 180 YTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEV 239

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+   H QLSSCF+ TV DDLY IF  +Q+   ++K++GGLG     VR  G
Sbjct: 240 SLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATG 299

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I    G S GV+P +K+ ND  V V+Q G RKG+    L+ WH DV +FL+++ N GD
Sbjct: 300 SPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGD 359

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD------EVSDLHDLYGKEFEIAYENY 525
           +R++ HD++ A  IPD+FMKR+     WTL  P       +  +L D YG+EFE  Y+  
Sbjct: 360 ERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRL 419

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ER+         +++ A  LW+++LT++FETG P+I F+D  N  +P +H GVV+SSNLC
Sbjct: 420 ERELPPN---AKKEVDAFELWKRLLTVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLC 476

Query: 586 TEITLNSS---------------------SEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            EI  N S                     S +  VCNLGSINL   +       + +   
Sbjct: 477 HEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSINLGKVYTK-----EDMERV 531

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   VR+LDNVI IN + I++A+ +N  +RAIG+G+  +   L    I + S E ++ A+
Sbjct: 532 VPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFAN 591

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I+++AI  S+ELA+ERG Y  F+GS W +GVF     G  AE    ++    + L
Sbjct: 592 ALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGVFF----GRDAEENQRMSEKNGNNL 647

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL + VKT G+RN+  +A+ PT + + I G + S+DP +   Y + NMSG    V  
Sbjct: 648 NWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPP 707

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +      R  W                            + +A+ ID  W+I +AS RQ
Sbjct: 708 EI-----DRYFWH---------------------------YKSAYSIDQEWIIRAASERQ 735

Query: 865 KWIDQAQSLNLYLDEPSGK--KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           KWIDQAQSLNL++D        L  +Y  +W +GLKT YY RS+S T +E+  
Sbjct: 736 KWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYCRSKSLTEIEECE 788


>gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           curvus 525.92]
 gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           curvus 525.92]
          Length = 790

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/867 (34%), Positives = 440/867 (50%), Gaps = 134/867 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++     A +GL++V+   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYHKVTGFNGYN---------------HLREYLQKG 105

Query: 264 VKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            KA R++      +DL  L   ++ ERD  F YLG++ LYDRY +   NG+ IE+PQ  F
Sbjct: 106 EKAGRIIAGLKEKYDLDDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+L
Sbjct: 286 GTRKGAIAVYIEPWHMDVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +VSDL DLYG+ FE  YE YE + +  +  V     A  LW+K+LT  FETG P++
Sbjct: 346 FDPAQVSDLCDLYGENFERRYEQYENEENIQKNVVL----AKELWKKILTSYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N++     +                      
Sbjct: 402 CFKDNANKANPNDHEGIIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTIDS 461

Query: 602 -----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L S+                    NL +   +       +   +  AVR
Sbjct: 462 GITKKAKKLSALDSLGGRQIFIVEKESVEGKTAVCNLASVNLSKVNKKADIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + +   E   + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDEL 749
           S+ AI  S  LA E+G Y +F+GS W +GV PID+    A+   +   +       W++L
Sbjct: 582 SYQAIYTSSNLAVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGGLFDEDTCDWEKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V       
Sbjct: 642 RAKVKTDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNVVP----- 696

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                      +  D  + +  A+E+D   L+ +A+ RQKWIDQ
Sbjct: 697 --------------------------NLSPDTWQFYTPAYELDQRVLVRAAAVRQKWIDQ 730

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            QSLN+++  D+ SG  L  IY  AW +GLK+TYYLRS S                    
Sbjct: 731 GQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES-------------------- 770

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                    S  + +      ECE CQ
Sbjct: 771 -------PDSEKVNNVADRSIECEGCQ 790



 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 34/150 (22%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  + ++   + + NL+E  V   +Q   
Sbjct: 1   MKVIKRNGRTEELDISKI------------KKYTTAAVAGLENV-NLSELEVDAKIQFR- 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYR-EERSDVRAAQSHSK 136
              ++  E+IQ     +L+++   KI            R + LY    +       +H +
Sbjct: 47  --DMITTEEIQ----QTLIKTAVDKIDIDRPNWTFVAARLF-LYDLYHKVTGFNGYNHLR 99

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
                  K   ++  G    ++   L   +
Sbjct: 100 EYLQKGEKAGRIIA-GLKEKYDLDDLNAYI 128


>gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
 gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
          Length = 790

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/866 (34%), Positives = 438/866 (50%), Gaps = 132/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL++VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVEGLENVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                     +YF R    G
Sbjct: 61  TAVEKIDVDRPNWTFVAARLFLYDLYHKVTGFSGYNS-----------LEDYFARGEAAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R++      +DL  L + L+ +RD  F YLG++ LYDRY +   +G+ IE+PQ  FM
Sbjct: 110 ---RIMLGLKEKYDLEDLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNELDCQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR+     WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EVSDL DLYG EFE  YE YE      +      I A  LW+K+LT  FETG P++ 
Sbjct: 347 DPAEVSDLSDLYGAEFEARYEQYEAD----DKISKSTILAKELWKKILTSYFETGMPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------------------- 599
           FKD  N  +P  H G++ SSNLCTEI  N++     +                       
Sbjct: 403 FKDNANRINPNAHQGLIRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRTDAG 462

Query: 600 -------------------------CNLGS---INLLAHFANNQFDYDKLASTIRTAVRV 631
                                    C+ G+    NL +   +     +++A  +  AVR+
Sbjct: 463 IVKKAKKITALDTLGGKEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIAVRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    + + S E  E+ D  ME +S
Sbjct: 523 LDNVIDLNFYPHAKVKHTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIMENVS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELK 750
           F+AI AS  LA E+G Y  F GS W +G+FPID     A+       +   S   WD L+
Sbjct: 583 FNAIKASSNLAVEKGRYPDFAGSKWSEGIFPIDLANENAKALVKRGGLFEQSSCDWDGLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVVVP------ 696

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +     + +  A+E+D   L+++ + RQKWIDQ 
Sbjct: 697 -------------------------NLSPKTWQAYVPAYELDQRLLVKAGAIRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN+++  D+ SG  L  IY  AW +GLK+TYYLRS S                     
Sbjct: 732 QSLNIFMSLDKASGGYLSEIYTLAWQLGLKSTYYLRSES--------------------- 770

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   S  + +      ECE CQ
Sbjct: 771 ------PDSEKLNNVADRSIECEGCQ 790



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 20/86 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S ++   + + +L+E  V   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKYTSEAVEGLENV-SLSELEVDAKIQFR- 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI 114
              ++  E+IQ     +L+++   KI
Sbjct: 47  --DMITTEEIQ----QTLIKTAVEKI 66


>gi|257456710|ref|ZP_05621900.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
 gi|257445903|gb|EEV20956.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
          Length = 849

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/922 (29%), Positives = 447/922 (48%), Gaps = 111/922 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLLQHN 87
           + +IKRNG   +++  KI+ A+  AF +V G  A  ++     +++ +T +    + + +
Sbjct: 1   MDIIKRNGEREAYNAEKITLAMQAAFNSVTGAEAQQKNSDTGALLRQMTAEIEADIYELS 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           K+   V +E IQD VE +L++   +   + ++LYR E++  R A+    +   +   L +
Sbjct: 61  KNGSPVQVETIQDLVEKTLIEHNRYAEVKNFILYRVEQTKKRDARRAIAAHFTLIDILPV 120

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +         +   L ++  +               E+++     ++E++L T LI ++ 
Sbjct: 121 LTRIQQDFPDDQYSLTLLFHK--------------FESFRK--PDMTEAELLTLLIKAAV 164

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + ARFL+     ++ T + K+  ++ + ++  L         E+G+  
Sbjct: 165 ELTAQEAPRWEFIAARFLMLDFSGKLKTELEKRNIRSFYDKLTYLE--------EKGLYG 216

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             +       +L      +   ++  F Y GL +L  RY +   G   +E PQ  F+ +A
Sbjct: 217 AYIRAGYSKEELEQAYAYIDNSKNDLFTYSGLDLLLRRYVISTRGHIPLETPQEMFLGIA 276

Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LAL E  ++ +    FY +LSS     +TPTL N+   + QLSSCF+ TVPD L GI+
Sbjct: 277 LHLALHEQKDRMEWVRRFYLMLSSLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIY 336

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++K+ GG+G  +  VR +GA I G  G + GVI ++K+ANDTAVAV+Q G R
Sbjct: 337 RSIDNFAKISKFGGGMGLYFGKVRAVGAPIRGFQGAAGGVIRWIKLANDTAVAVDQLGVR 396

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF + V ++  A W L 
Sbjct: 397 QGSVAVYLDVWHKDVPEFLQLRTNNGDDRMKAHDVFPAVCCPDLFWRTVDEDIGASWYLM 456

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P E+       L D YG+E+E  Y    +          R+I    L R +L    ETG
Sbjct: 457 CPHEILTVKGYALEDFYGEEWEKRY----KDCINDNRISKREIPVKELVRLILKSAVETG 512

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------S 594
            P+I  +D  N  +P  H G+++SSNLCTEI  N S                        
Sbjct: 513 TPFIFNRDHANRANPNGHKGMIYSSNLCTEIAQNMSPIHAVNTEIQTQDGETVVVTVTKP 572

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +  VCNL S+ L     +N     +L   I  AVR LDNVID+N + +  AK +N  +R
Sbjct: 573 GDFVVCNLASLVLGNIDTDND---AELEGIIEAAVRALDNVIDLNFYPVPYAKITNEQYR 629

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           AIGLG+ G+   L   HI + S   +++ADE  E I+++A+ AS+++AQE+GAY  F+ S
Sbjct: 630 AIGLGVSGYHHLLAKKHIAWESDAHLKLADELFEKINYYAVQASMQIAQEKGAYRLFEDS 689

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W  G +                  R     W+ L++ V   G+RN   +A+APT++ + 
Sbjct: 690 DWQTGAY--------------FEKRRYQSERWNALREEVARHGIRNGYLLAVAPTSSTSI 735

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G +  IDP  +  +++         V   L                            
Sbjct: 736 VAGTTAGIDPIMKRYFLEEKKGSLVPRVAPALSL-------------------------- 769

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
                D   ++  A  ID +W I +   RQ+ IDQ QS+N Y+    S +++  +Y +AW
Sbjct: 770 -----DTYWLYKNAHTIDQLWSIRACGLRQRHIDQGQSMNFYITNDYSFRQVLNLYVEAW 824

Query: 894 LMGLKTTYYLRSRSATSVEKST 915
             G+K+ YY+RSRS    E  +
Sbjct: 825 KNGIKSVYYVRSRSLEVEECES 846


>gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
 gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
          Length = 788

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/832 (34%), Positives = 438/832 (52%), Gaps = 106/832 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     +  +++     A   L +VS   +  +   +  DG++ ++++  LI 
Sbjct: 2   ITIIKRNGRTEPLDITKIQKYTSAAVKDLSNVSQSELEVDAQIHFRDGITSAEIQKTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  +  L  +V                   Y     +Y E+G
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFMFNLYHQVNGFTG--------------YGS-LKKYFEKG 106

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K   L + + D +DL  L   +K ERD  F YLG++ LYDRY +     + IE+PQ  F
Sbjct: 107 EKEGRLLQGLADMYDLDRLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA +E EK + A++FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQREEEKHEWAIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +  E AML+K+ GG+G DWT +R +G++I G    + G +PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYAEMAMLSKFGGGIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WTL
Sbjct: 287 GTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  +L  LYG+EF   Y+  E      E  V  K+ A  LW+K+LT  FETG P++
Sbjct: 347 FDPYDTKELATLYGEEFNKRYKELEED----ESIVKEKVKAKNLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS----------------- 604
            FKD  N  +P  HVGV+ SSNLCTEI  N++     +  +                   
Sbjct: 403 CFKDNANRANPNNHVGVIRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVDS 462

Query: 605 ----------------------------------INLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  AVR
Sbjct: 463 GMEKPAKKVTALDSLGGLPIYVVEKEKINGDTAVCNLASVNLSRVNTKEDIDRIVPIAVR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID+N + IEK K++N   R+IGLG+MG    L    I + S E  +  DE ME +
Sbjct: 523 CLDNVIDLNFYPIEKVKRTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKIDEIMEAV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           SF+ ISAS +LA E+G Y  F+GS W +GV P+D          +      S   WD+L+
Sbjct: 583 SFNTISASSDLALEKGIYPDFEGSQWSKGVMPMDHANAEVRNLVDRGGLFASTYEWDDLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  GMRN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV        
Sbjct: 643 AKVKKQGMRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVVVP------ 696

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  +    +  A+E++   LI++A+ RQKW+DQ 
Sbjct: 697 -------------------------NLSPETWAYYTPAYELNQTLLIKAAAIRQKWLDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           QSLN+++  D+ SG+ L+ IY  AW +GLK+TYYLRS+S         + ++
Sbjct: 732 QSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQSPEVANDVEDRSME 783


>gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
 gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
          Length = 791

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/868 (34%), Positives = 441/868 (50%), Gaps = 135/868 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSGYN---------------HLRDYLQKG 105

Query: 264 VKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            KA R++      +DL  L + ++ ERD  F YLG++ LYDRY +   +G+ IE+PQ  F
Sbjct: 106 EKAGRIIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA W+L
Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV+DL DLYG EFE  Y  YE      E      + A  LW+K+LT  FE+G P++
Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYEND----EKIQKNVVMAKELWKKILTSYFESGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDNANKTNPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEEEDVRVDS 461

Query: 602 -----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +     + +   +  AVR
Sbjct: 462 GIVKKAKKLSALDSIGGEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDE 748
           SF+AI AS  LA E+G Y  F+GS W +GV PID+    A+    D   +   +   W +
Sbjct: 582 SFNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENACDWSK 641

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V      
Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNVVP---- 697

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                       +  +  + +  A+E+D   L+ + + RQKWID
Sbjct: 698 ---------------------------NLSPETWQFYTPAYELDQRVLVRAGAIRQKWID 730

Query: 869 QAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           Q QSLN+++  D+ SG  L  IY  AW +GLK+TYYLRS S                   
Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYMLAWELGLKSTYYLRSES------------------- 771

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     S  + +      ECE CQ
Sbjct: 772 --------PDSEKLNNVADRSIECEGCQ 791



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 36/173 (20%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S ++     + +L+E  V   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKYTSEAVAGLANV-SLSELEVDAKIQFR- 46

Query: 89  SALIVHIEDIQD-----QVECSLMQSGHHK-ITREYVLYREERSDVRAAQSHSKSDAPIA 142
              ++  E+IQ       VE   +   +   +     LY           +       + 
Sbjct: 47  --DMITTEEIQQTLIKTAVEKIDIDRPNWTFVAARLFLYDLYH-----KVTGFSGYNHLR 99

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
             L+     G +I    ++           L D++  I      +  Y G+  
Sbjct: 100 DYLQKGEKAGRIIPGLKEK---------YDLDDLNDYIRPERDLQFAYLGIKT 143


>gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
 gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
          Length = 791

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/868 (34%), Positives = 441/868 (50%), Gaps = 135/868 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSGYN---------------HLRDYLQKG 105

Query: 264 VKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            KA R++      +DL  L + ++ ERD  F YLG++ LYDRY +   +G+ IE+PQ  F
Sbjct: 106 EKAGRVIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA W+L
Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV+DL DLYG EFE  Y  YE      E      + A  LW+K+LT  FE+G P++
Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYEND----EKIQKNVVMAKELWKKILTSYFESGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEEEDVTVDS 461

Query: 602 -----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +     + +   +  AVR
Sbjct: 462 GITKKAKKLSALDSIDGKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDE 748
           S++AI AS  LA E+G Y  F+GS W +GV PID+    A+    D   +   +   W +
Sbjct: 582 SYNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENACDWSK 641

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V      
Sbjct: 642 LREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNVVP---- 697

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                       +  +  + +  A+E+D   L+ + + RQKWID
Sbjct: 698 ---------------------------NLSPETWQFYTPAYELDQRVLVRAGAIRQKWID 730

Query: 869 QAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           Q QSLN+++  D+ SG  L  IY  AW +GLK+TYYLRS S                   
Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES------------------- 771

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     S  + +      ECE CQ
Sbjct: 772 --------PDSEKLNNVADRSIECEGCQ 791


>gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 789

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY L  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|257792031|ref|YP_003182637.1| ribonucleotide-diphosphate reductase subunit alpha [Eggerthella
           lenta DSM 2243]
 gi|257475928|gb|ACV56248.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           lenta DSM 2243]
          Length = 845

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/920 (29%), Positives = 426/920 (46%), Gaps = 117/920 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V        +   +    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVGK------VLDDEEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  R A+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRVARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++       F  +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKE-FPGEE---------YELAHLSAKF-----QSFAKPDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +           +      EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETF--------AQKVAFLTEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E  +E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A        R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARI----KKRAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N                       + 
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L     +   D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHIDMD---DPHELAHVTESAVRALDNVIDLNFFPVPYAEINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D                 +   W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------------RGLTDGRWAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY  +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+KT YY+RS+S    E
Sbjct: 820 WEEGVKTIYYVRSKSLEVEE 839


>gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
 gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
          Length = 788

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/834 (35%), Positives = 434/834 (52%), Gaps = 117/834 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI 
Sbjct: 2   LTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V      K                   Y+E G
Sbjct: 62  TAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKT---------------LKEYLEIG 106

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      F+L  L   +  +RD  F YLG++ LYDRY L    G+ IE+PQ  F
Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MGIAMFLAQNEDDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE      E      I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYEAD----ESIPKETIKAKDLWKRILTNYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVG-----------------------------VVHSSNLCTEITLNS 592
            FKD  N  +P  H G                              +       E+  + 
Sbjct: 403 CFKDNANRANPNYHSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDC 462

Query: 593 S---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
                                         +TAVCNL SINL           + +   +
Sbjct: 463 GILKSSNKITSTDSINGKKVFISQRESVDGKTAVCNLASINLSKINTK-----EDIERVV 517

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE
Sbjct: 518 PIAIRMLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDE 577

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            ME IS++AI+AS +LAQE+G Y+ F GSLW QG+FPID     A+   +          
Sbjct: 578 IMEMISYNAINASCKLAQEKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYD 637

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L++ VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   
Sbjct: 638 WDSLREEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPN 697

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                       S+ N           + +A+EID   +I++A+ RQK
Sbjct: 698 L-----------------------SLENW--------NYYTSAYEIDQTLIIKAAAIRQK 726

Query: 866 WIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           WIDQ QS N+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S    E ST+ 
Sbjct: 727 WIDQGQSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQS-VEAENSTMD 779


>gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
          Length = 789

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/823 (36%), Positives = 436/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      + C Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLCEYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 38/153 (24%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVR-AAQSH 134
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLCE 100

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                    ++ +    G    ++   L   ++
Sbjct: 101 YFEKGEKEGRILL----GLKEKYDLDDLNAYIK 129


>gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 789

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDISKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
             +        ++   G    ++   L   ++
Sbjct: 101 YFEKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 789

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/822 (36%), Positives = 438/822 (53%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V         +  H        EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG-----MNRYNH------LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 601 ---------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                      ++   G    ++   L   ++
Sbjct: 101 YFQKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|319902177|ref|YP_004161905.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417208|gb|ADV44319.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
          Length = 839

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/925 (30%), Positives = 436/925 (47%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F++          +V D    +  + V   +  N 
Sbjct: 1   MEITKRNGTREPYDKEKIATAIRKSFISTG-------QKVTDETIYILVREVENFVDGNM 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPKL 145
                ++E IQD+VE  LM+ G +   + Y+LYR +R++ R A ++      D  +   L
Sbjct: 54  ENR--NVERIQDEVERCLMEHGFYTEAKNYILYRWQRTERRKALNNIVNEVGDTTLMDIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D T   ++                     I+L+E + + Y   ++  +  TAL+ 
Sbjct: 112 KSIQQDFTCNEYSL--------------------IMLAEKFSSFYKPEMASKERLTALVK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +E+          + +        E  C    EG
Sbjct: 152 AAIELTTQEAPDWEFIAARILNFQLSKELKEQEGVAGIHSFY--------EKLCFLTNEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
           +    +  +    ++      L  ERD    Y GL +L  RY +   +   IE  Q  ++
Sbjct: 204 LYGDYILAAYSPQEIEEAEGFLCSERDKLLNYSGLDLLAKRYLIRTRSHQLIESVQEMYL 263

Query: 323 RVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E +       + Y+LLS      +TPT+ N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPENKNRMSWVKKIYDLLSCLEATMATPTMANARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGLYFGKVRASGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--W 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   ++    W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQVW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +F P+E+       L D YGKE+E  Y    + +        R IS   + R +L    
Sbjct: 444 YMFCPNEIMTVKGYCLEDFYGKEWECRYLECVKDSR----LSKRSISIKDIIRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------------- 593
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N S                     
Sbjct: 500 ETGTPFTFNRDTVNYANPNTHKGIIYCSNLCTEIAQNMSAIENISTDIKTKEGDTVVVKT 559

Query: 594 --SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +NH
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEEQMRDKVATIVRALDNVIDLNFYPVPFARITNH 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL L  I + S E +   D+  E I++ AI AS +LA+E+G Y+ F
Sbjct: 617 RYRSIGLGVSGYHHALALRGIHWESDEHLHFMDKVFERINYAAIQASADLAKEKGKYAYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W  L K+V   GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAYFSK--------------RGYTSSAWQRLAKKVSEYGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
              I G +   DP  +  +++         V                             
Sbjct: 723 TGIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP--------------------------- 755

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                + D    I+  A+ ID  W I +A  RQ+ +DQAQSLNLY  +E + +++  +Y 
Sbjct: 756 ----GLSDKTYWIYKGAYLIDQQWSIRAAGIRQRHLDQAQSLNLYITNEFTMRQVLRLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWECGVKTLYYVRSKSLEVEECES 836


>gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
          Length = 789

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/822 (36%), Positives = 433/822 (52%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V         +  H        EYF R  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG-----MNRYNH------LREYFERGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  +    IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G +I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+     +  V   I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  H G++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGG 462

Query: 601 ---------NLGSINLLAHFANNQFD--------------------YDKLASTIRTAVRV 631
                     L SIN    F   +F                      + LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750
           + AI AS  LA E+G+Y  FKGS W +G+FPID     A+       +   S   WD+L+
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRGGLFAQSSCDWDQLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 QKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              + W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -NLETWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY  A  +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773


>gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 789

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
             +        ++   G    ++   L   ++
Sbjct: 101 YFEKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 789

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/822 (36%), Positives = 438/822 (53%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V         +  H        EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG-----MNRYNH------LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 601 ---------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                      ++   G    ++   L   ++
Sbjct: 101 YFQKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
 gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
          Length = 770

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/828 (30%), Positives = 402/828 (48%), Gaps = 71/828 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
            +++  I  K KI+  +    +       +++   C  +    V    ++ +        
Sbjct: 3   DENNFEIDSKFKIIPSNNVSENL-----TLLLNSLCKNIDTRYVDVPKLVHKVVAE-SGD 56

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +    ++      + ++     +YA +  R L+E L  +V +                + 
Sbjct: 57  IGFDKIKLYCADVAASMTYVHYDYALLAGRILVEDLHSKVSSCFVTIANDLFSRN---VL 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            + F + +++                  L N++K+ERD+ ++Y G + L + Y L I+  
Sbjct: 114 SDEFNQLVKKH--------------GAILNNEIKHERDYNYKYFGFKTLTNGYLLKIDDV 159

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ   MRVA+ +     +  K  +E Y L+S   F  ++PTLF++GTR  Q+ SCF
Sbjct: 160 IMERPQHMLMRVALAIHG---DDVKSVIETYQLMSLGTFTHASPTLFSAGTRRQQMCSCF 216

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L ++  D + GI+  L E+A+++   GGLG                N    G++  L+V 
Sbjct: 217 LQSIKDDSVDGIYKTLHESALISNLGGGLGLSAQ------------NSGGSGLVNMLRVF 264

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           N+    V+QGGKRKGA+ AY+E WH ++ EFL+LR+N G +  +  D+    WIPDLFMK
Sbjct: 265 NNMVRHVDQGGKRKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMK 324

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  N  W+LFS     DL D YG +FE+ Y +YE           R++ A  L+R ++ 
Sbjct: 325 RVKNNQMWSLFSHKTCPDLADKYGFDFEMRYCDYENA-----QVYERQVKARDLFRFIVE 379

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLA 609
              ETG P++ +KD CN  S Q+++G +  SNLC EI       ETAVCNL SI  N   
Sbjct: 380 TNVETGGPYMLYKDHCNNFSNQKNLGTIKCSNLCAEIVQYCDENETAVCNLASIAVNKCV 439

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 FDY  L    +  VR L+ +ID+N +   ++++SN  HR IG+G+ G   A  L
Sbjct: 440 DVDAKTFDYVLLKHLTKIIVRNLNKIIDVNHYPTAESERSNKKHRPIGVGIQGLADAFVL 499

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y S +A  +     E I F A+ AS ELA+  G Y S+  S   +G+    +    
Sbjct: 500 LDIAYDSDDARFVNYSIAETIYFAALEASCELAKINGPYESYTDSPVSRGILHFHNYD-- 557

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +    +  +   W+EL+  +   G+RNS  +A  PTAT A I G ++S +P   N+
Sbjct: 558 ---DENGVYHSNNLWDWNELQCNINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNV 614

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y++  ++G+F VVN +LV  L   D++   + + +   +GS+ NI+ IP  +K +  TA+
Sbjct: 615 YLRRVLAGEFQVVNQYLVKALIDLDIYTPELRNKILAENGSVQNIDEIPQHVKNLFKTAW 674

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    +I  A+ R  +IDQ+QSLNL++ EP+   +  I+  AW   LKT  YYLR++ A
Sbjct: 675 EIKSKCIINMAADRAPFIDQSQSLNLFVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPA 734

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE---CEVC 953
               K T+                 +  S         D +   C  C
Sbjct: 735 AQATKFTVDV--------------ETVASCSKKRKMNDDDDNVVCVSC 768


>gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni RM1221]
 gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni RM1221]
 gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 789

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
             +        ++   G    ++   L   ++
Sbjct: 101 YFEKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 789

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/822 (36%), Positives = 438/822 (53%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V         +  H        EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG-----MNRYNH------LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462

Query: 601 ---------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                      ++   G    ++   L   ++
Sbjct: 101 YFQKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
 gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
          Length = 789

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L + +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTQDLCDLYGEAFEKRYEEYEKD----ESIAKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDG 461

Query: 601 ----------NLGS--------------------INLLAHFANNQFDYDKLASTIRTAVR 630
                      L S                     NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           S+ AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   WD+L
Sbjct: 582 SYEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSECDWDKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  E
Sbjct: 642 REKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNLSLE 701

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                            + +  A+E+D   L+++A+ R KWIDQ
Sbjct: 702 -------------------------------TWQYYTPAYELDQRILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNDIYQLAWELGVKSTYYLRSESPDS 773


>gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
 gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
          Length = 789

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/822 (36%), Positives = 432/822 (52%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V         +  H        EYF R  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG-----MNRYNH------LREYFERGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  +    IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+     +  V   I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  H G++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGG 462

Query: 601 ---------NLGSINLLAHFANNQFD--------------------YDKLASTIRTAVRV 631
                     L SIN    F   +F                      + LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750
           + AI AS  LA E+G+Y  FKGS W +G+FPID     A+       +   S   WD+L+
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRDGLFAQSSCDWDQLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 QKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              + W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -NLETWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY  A  +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSESPDS 773


>gi|169825013|ref|YP_001692624.1| ribonucleotide-diphosphate reductase subunit alpha [Finegoldia
           magna ATCC 29328]
 gi|167831818|dbj|BAG08734.1| ribonucleoside-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 29328]
          Length = 842

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/913 (30%), Positives = 445/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           Q+ ++++ +Q    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQQIENTIVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +         K +
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFE---------KFI 105

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            DD  +       +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 106 TDDDVIE-----IIRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +        +    +++Q    +      E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIK-------KLEIQYDLQDFKSK-IKFLDERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V  +    W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+S     +L D YG E+E  Y          E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRYNECVLD----ESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                         +
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISENIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENGEY--------------FKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         +   +   L  +  W                   
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKG----TIVPRVAPGLSPQTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A E+D    +++ S RQ+ IDQ QS+N+Y+    + + +  IY +AW 
Sbjct: 767 --------LYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|303237765|ref|ZP_07324324.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
 gi|302482051|gb|EFL45087.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
          Length = 839

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/921 (29%), Positives = 440/921 (47%), Gaps = 119/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G   S+   KI  AI K+F++V   G  R       I+ +  +    +L+H+ 
Sbjct: 1   MKIKKRDGSEESYTQQKIISAITKSFISVNSLGHQRD------IEQMALEIEAFVLEHDD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +LM  G +   + Y+L+R +R++ R    +   +       +++
Sbjct: 55  KR---DVESIQDIVEKTLMSHGFYDEAKSYILFRWQRNEQRKYIKNIAFNIGDNSIEEVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G    F                 + S  ++  +        +S+++   ALI ++  
Sbjct: 112 --NGIRQDFRGA--------------EYSVTLLSDKFVSFSKPLMSQTEKLAALIKAAVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L   E P +  ++ R L  +L + +     K    + + +++ L         +EG+  +
Sbjct: 156 LTTAECPQWEMISGRLLSFQLNKSIEALERKLNINSFYDKIKYL--------TDEGLYGQ 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + ++    ++V     ++ ER+  F Y GL +L  RY +   +G  +E  Q  +M +A+
Sbjct: 208 YILDNYTKEEIVEAEKLMRPERNHLFNYSGLDLLAKRYLIRGYDGRIVENVQEMYMGIAL 267

Query: 327 GLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E  ++     + Y+LLS      +TPTL N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 268 HLAMPEKSDRLLWVKKIYDLLSQLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLIGIYR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G R+
Sbjct: 328 SIDNFAQVSKFGGGMGMYFGKVRATGGSIRGFKGAAGGVIRWMKLVNDTAVAVDQLGMRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   ++    W LF 
Sbjct: 388 GAVAVYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEESLEQNWYLFC 447

Query: 504 PDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           PDE+       L D YG+E+E  Y+     A        R IS   L R +L    ETG 
Sbjct: 448 PDEIKRVKGYALEDFYGEEWERRYKECIDDA----RLSRRIISIKDLVRLILRSAVETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------E 595
           P+   +D  N  +P  H G+++ SNLCTEI  N +                         
Sbjct: 504 PFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAEIKEVSQVVTTENGDTVVVTTVKPG 563

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S++L         D   +   + T VR LDNVID+N + +  AK +NH +R+
Sbjct: 564 DFVVCNLASLSLGRLPLE---DKAAMCEKVATVVRALDNVIDLNFYPVPFAKITNHNYRS 620

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL +  I + S + +E  D+  E I++ AISAS E+A+E+GAY  F+GS 
Sbjct: 621 IGLGVSGYHHALAIRGIKWESDKHLEFMDKVFETINYAAISASTEIAKEKGAYKYFEGSD 680

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +                        W +L++ +   GMRN+  +A+APT++ + +
Sbjct: 681 WQTGKY--------------FEKRNYITSDWQQLRETIGKQGMRNAYLLAVAPTSSTSIL 726

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP  Q  +++         V       L  +  W                   
Sbjct: 727 AGTTAGLDPIMQRFFLEEKKGAMLPRVAP----ALSDKTYW------------------- 763

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A+ I+  W + ++  RQ+ IDQAQS+NLY  +E + +++  +Y  AW 
Sbjct: 764 --------VYKDAYHINQQWSVRASGVRQRHIDQAQSMNLYITNEYTMRQVLNLYILAWK 815

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+KT YY+RS+S    E  +
Sbjct: 816 SGVKTIYYVRSKSLEVEECES 836


>gi|297587435|ref|ZP_06946080.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
 gi|297575416|gb|EFH94135.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
          Length = 842

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/913 (29%), Positives = 443/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           ++ ++ + ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIKLAMKKAYASVGIYAE------ENELEAMAQEIENTIVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +        ++I 
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFERFITDEDVIEI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +        +    +++Q    +      E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIK-------KLEVQYDLQDFKSK-IKFLDERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326
            + E   D D+  L   +  +RD  F +  L ++  RY +  + +R+ E  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYIDDDRDKLFTFSALDLIIKRYLIKTHDNRVMESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSTLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V  +    W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+S     +L D YG E+E  Y          E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRYNECVLD----ESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                         +
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENGEY--------------FKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         +   +   L  +  W                   
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKG----TIVPRVAPGLSPQTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A E+D    +++ S RQ+ IDQ QS+N+Y+    + + +  IY +AW 
Sbjct: 767 --------LYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYIRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 790

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 432/819 (52%), Gaps = 106/819 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  +G +   +  +++   +++  GL+ VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVVKRNGRIEPLDVTKIQKHTKDSVLGLEGVSQSELEVDAKLQFRDKITTQEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L   V      K                   Y E+G
Sbjct: 62  TAVDKIDIDCPNWTYVAARLFLYDLYHRVNGFNGYKS---------------LAEYFEKG 106

Query: 264 V-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
             + R++      F+L  L   +  ERD  F YLG++ LYDRY L    G+ IE+PQ  F
Sbjct: 107 ERENRIIGGLKEKFNLDRLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD + 
Sbjct: 167 MGIAMFLAQNEKDPNYWAEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W+L
Sbjct: 287 GTRKGAISVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWSL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y  YE+     E  V   + A  LW+K+LT  FE G P++
Sbjct: 347 FDSLACADLTNLYGEAFEARYIQYEQD----ESIVRETVKAKDLWKKILTSYFEIGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---CNLGSI------------- 605
            FKD  N  +P  H G++ SSNLCTEI  N+    T +      G+I             
Sbjct: 403 CFKDNANRANPNAHAGIIRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITDY 462

Query: 606 -----------------------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GIEKLSNKITSTDSIGGKKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S   ++  D  ME +
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI +S ELAQE+G YS F GS W +G+FPID     A+   +          W+ L+
Sbjct: 583 SYNAIKSSCELAQEKGVYSDFVGSEWSKGIFPIDKANNEAKALVDRGGLFAYDYDWNALR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EEVKTKGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                              S+ N           + +A+EID   L+++A+ RQKWIDQ 
Sbjct: 699 -------------------SLDNW--------NYYTSAYEIDQRLLVKAAAVRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QS N+++  +  SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 732 QSTNIFMALNLASGKYLNEIYTLAWKLGLKSTYYLRSQS 770


>gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas denitrificans DSM 1251]
          Length = 788

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/833 (35%), Positives = 451/833 (54%), Gaps = 107/833 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI 
Sbjct: 2   VTIIKRNGRTEKLDISKIQKYTSAAVEGLSNVSQSELEVDAQIHFRDGITSKEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  L  L  EV                 C    YF R  +EG
Sbjct: 62  TAVDKIDIDAPNWTFVASRLFLFNLYHEVNGF-----------TGYCSLENYFERGEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              RLL+     ++L  L   +K ERD  F YLG++ LYDRY +   N + IE+PQ  FM
Sbjct: 111 ---RLLYGLKGMYNLEELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA +E +KE+ A++FYN++S+F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AIAMFLAQREEKKEEWAIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF +  E AML+K+ GG+G DWT VR +G++I G    + G +PFLK+ ND AVAV+Q G
Sbjct: 228 IFDSYAEMAMLSKFGGGIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WTLF
Sbjct: 288 TRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  +L  L+G+EF   Y   E+     E  +  K+ A  LW+K+LT  FETG P++ 
Sbjct: 348 DPYDCRELTTLHGEEFNKKYVELEK----NEAIIKEKLKAKNLWKKILTSYFETGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  H G++ SSNLCTEI  N++     +                       
Sbjct: 404 FKDNANRANPNSHSGIIRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDSG 463

Query: 602 ----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +     + +   +  A+R 
Sbjct: 464 LKKPAKKVTALDSIGGREIYVVEKEKINGDTAVCNLASVNLSRINTKEDIDRVVPIAIRA 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + IEK K++N   RAIGLG+MG    L    I + + E  +  DE ME +S
Sbjct: 524 LDNVIDLNFYPIEKVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEIMESVS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           F+AISAS ++A E+G+YS ++GS W +G+ P+D      +   +      S   W+EL+ 
Sbjct: 584 FNAISASSDIALEKGSYSEYEGSKWSRGIMPMDHATAEVKNLVDRGGLFASAYEWEELRT 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  G+RN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV         
Sbjct: 644 KVKNQGIRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSGLIPVVVP------- 696

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    +  A++++   LI++A+ RQKW+DQ Q
Sbjct: 697 ------------------------ELSPETWAYYTPAYDLNQTLLIKAAAIRQKWLDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVEKSTLKGV 919
           SLN+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S   A+ VE  +++ V
Sbjct: 733 SLNIFITLDKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMASDVEDRSMECV 785


>gi|255008713|ref|ZP_05280839.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313146448|ref|ZP_07808641.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313135215|gb|EFR52575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
          Length = 838

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/927 (30%), Positives = 438/927 (47%), Gaps = 132/927 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG    ++  KI+ AI K+F +   +    ++    I+  +       + +   
Sbjct: 1   MQIIKRNGATEPYNREKIAVAIRKSFASTGREVPDETVYT--IVDEVELFLCDEVHR--- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD---APIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H  S      +A  L
Sbjct: 56  -----SVEQIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKAFNHIVSSIGSEALADTL 110

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIF 204
           K +  D     ++                     ++L+E + N+    ++  +  T LI 
Sbjct: 111 KDIQKDFVANEYSL--------------------VILAEKFVNLCKTDMTAEERLTTLIK 150

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY--FCRYIE 261
           ++  L  +E P++  + AR    +L            +     E+  +Y  Y       +
Sbjct: 151 AAVELTSQEAPDWEFIAARLFNFQL----------TQKLKVQAEIAGIYSFYDKLRYLTD 200

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
           EG+    +  +    ++   A  +  ERD  F Y GL +L  RY +  +    +E  Q  
Sbjct: 201 EGLYGDYILSAYSPREIEVAAGFMCPERDKLFNYSGLDLLAKRYLIRTHSHEPMESVQEM 260

Query: 321 FMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           ++ +A+ L + E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 261 YLGIALHLGMSEKCDRLQWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDS 320

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+
Sbjct: 321 LEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVD 380

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NA 497
           Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N 
Sbjct: 381 QLGMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQ 440

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W LF P+E+ +     L D YG+E+E  Y +         +   R ++   + R +L  
Sbjct: 441 QWYLFCPNEIMNVKGYCLEDYYGEEWEQKYLDCINDP----LLSKRVLNIKDIVRLILRS 496

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------- 597
             ETG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET               
Sbjct: 497 AVETGTPFTFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSSIETVSTEVRTEGGDTVVV 556

Query: 598 --------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                    VCNL S++L         D  ++   I   VR LDNVID+N + I  A+ +
Sbjct: 557 NTVRPGDFVVCNLASLSLGHLPLE---DERQMKEKIAVVVRALDNVIDLNFYPIPFARIT 613

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           NH +R+IGLG+ G+  AL L  I + S E ++  D+  E I++ AI AS  LA+E+G Y 
Sbjct: 614 NHRYRSIGLGVSGYHHALALRGIRWESVEHLDFIDKVFECINYAAIEASAGLAKEKGRYV 673

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W  G +               A      L W +L  +V   GMRN+  +AIAPT
Sbjct: 674 YFEGSDWQTGAY--------------FAKRGYDSLQWKDLAAKVAADGMRNAYLLAIAPT 719

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           ++ + I G +   DP  +  +++         V   L                       
Sbjct: 720 SSTSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPSL----------------------- 756

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
                    D    ++  A+ ID  W I +A  RQ  IDQAQSLNLY+    + +++  +
Sbjct: 757 --------SDKTYWLYKGAYRIDQTWSIRAAGIRQLHIDQAQSLNLYITNDFTMRQVLNL 808

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y  AW  G+KT YY+RS+S    E  +
Sbjct: 809 YLLAWECGVKTVYYVRSKSLEVEECES 835


>gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 789

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/823 (36%), Positives = 435/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L +I                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDNIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG     D SKI             K  S +++  + + NL+E  +   +Q   
Sbjct: 1   MKVIKRNGRTEELDVSKI------------KKCTSDAVKDLEGV-NLSELELDAKIQFRD 47

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYV--LYREERSDVRAAQSHS 135
               +  E+IQ     +L+++   KI            R ++  LY++     R      
Sbjct: 48  G---ISTEEIQ----KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLRE 100

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
             +        ++   G    ++   L   ++
Sbjct: 101 YFEKGEKEGRILL---GLKEKYDLDDLNAYIK 129


>gi|302379637|ref|ZP_07268122.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312544|gb|EFK94540.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 842

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/913 (30%), Positives = 445/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +         K +
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFE---------KFI 105

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            DD  +       +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 106 TDDDVIE-----IIRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVDLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +        +    +++Q    +      E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIK-------KLEIQYDLQDFKSK-IKFLDERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V  +    W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+S     +L D YG E+E  Y          E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRYNECVLD----ESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                         +
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENGEY--------------FKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         +   +   L  +  W                   
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKG----TIVPRVAPGLSPQTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A E+D    +++ S RQ+ IDQ QS+N+Y+    + + +  IY +AW 
Sbjct: 767 --------LYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
 gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
          Length = 904

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/783 (31%), Positives = 391/783 (49%), Gaps = 55/783 (7%)

Query: 176 VSSKIVLSETYKNMY-DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           V    ++ +  +++  +G+S   ++      + ++     +YA +  R L+E L  +V  
Sbjct: 170 VDVPKLMQKIKESINENGVSFEQMKLYCADVAASMTYIHYDYALLAGRILVEDLHNKVCP 229

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
              +            +  E+    ++ G                 L  ++K+ RD+ ++
Sbjct: 230 CFVEVTNYLAQ--NNVVSHEFNNLVVKHG---------------ALLNREIKHNRDYDYK 272

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           Y G + L + Y L +N    E PQ   MRVA+ +     +    A+E Y L+S   F  +
Sbjct: 273 YFGFKTLTNGYLLKVNDVIAERPQHMLMRVALAIHG---DDVMSAIETYQLMSLGTFTHA 329

Query: 355 TPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +PTLF +GT  PQ+ SCFL  +  D + GI+  L E+A+++   GGLG     V      
Sbjct: 330 SPTLFAAGTCRPQMCSCFLQCIKEDSIDGIYKTLHESALISNLGGGLGLSVQSVSAQ--- 386

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            +    KS G++  L+V N+    V+QGGKRKGA+ AY+E WH ++ + L+LR+N G + 
Sbjct: 387 -YNGTTKSGGLVSMLRVFNNMVRHVDQGGKRKGALAAYVEPWHPEIYDVLNLRRNMGSED 445

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  D+    WIPDLFM+RV +N  W+LF P +   L D YG  FEI YE YE+      
Sbjct: 446 AKARDLMLGLWIPDLFMERVKENKEWSLFCPKKYPGLLDEYGSSFEILYEKYEK-----N 500

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               R++ A  L+R ++    ETG P++ +KDPCN  S Q+++G++  SNLC EI     
Sbjct: 501 KLYERQVKARDLFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGIIKCSNLCAEIVQYCD 560

Query: 594 SEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            +ETAVCNL SI  N   +     FDY  L    +  VR L+ +ID N +    A  SN 
Sbjct: 561 KDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTKIVVRNLNKIIDSNHYPTAGAANSNK 620

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+ G   A  LL IPY S EA  +     E I F A+ AS ELA+  G Y S+
Sbjct: 621 KHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALEASCELAKIDGPYESY 680

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S   +G    D+  +                 W +L+++++  G+RNS  +A  PTAT
Sbjct: 681 ENSPLFRGTMHYDNYNIYP---------TDHLWNWSKLREKIQRHGVRNSLLVAYMPTAT 731

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            A I G ++S +P   N+Y++  ++G+F VVN +L+  L   +++   + + +   +GS+
Sbjct: 732 TAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNIYTPELRNKILAENGSV 791

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NI+ IP  +K +  TA+EI    +I+ A+ R  +IDQ+QSLNL++ EP+   +  I+  
Sbjct: 792 QNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNLFVAEPTYSVMSSIHFY 851

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            W   LKT  YYLR++ A    + T+        A             G         EC
Sbjct: 852 TWQKQLKTGMYYLRTKPAAQATQFTVDA-----EAAASCGKKRKMDDDGT-------EEC 899

Query: 951 EVC 953
             C
Sbjct: 900 MSC 902


>gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 789

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/822 (36%), Positives = 437/822 (53%), Gaps = 105/822 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVTKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L + V         +  H        EYF +  +EG
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKRVNG-----MNRYNH------LREYFQKGEKEG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  FM
Sbjct: 110 ---RILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNSQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE ++L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMSLLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDIGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEKYEKD----ESITKEIVEAKDLWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------------------- 600
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDGG 462

Query: 601 ---------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSINGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  FKGS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFKGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWAKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                            +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 789

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/823 (36%), Positives = 436/823 (52%), Gaps = 107/823 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                      +   Y E+G
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNG---------------MNRYNHLREYFEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L + +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  HVG++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDG 461

Query: 601 ----------NLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                      L SI                    NL +   +  +  + +   + TA+R
Sbjct: 462 GYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME I
Sbjct: 522 MLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           SF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L
Sbjct: 582 SFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W                            +  A+E+D   L+++A+ R KWIDQ
Sbjct: 699 --SLDTWQ--------------------------YYTPAYELDQKILVKAAAVRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 731 GQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 773


>gi|325478799|gb|EGC81909.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 842

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/918 (30%), Positives = 441/918 (48%), Gaps = 116/918 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G    F+  KI RAI KAF +V+      S   +  ++ ++E+    + Q   
Sbjct: 1   MQIIKRDGNKVDFEKIKIERAISKAFFSVD------SSITEKDLRKMSEKIEQTIKQKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E++QD VE +L+   +++  + ++LYR + +  R   +           L I 
Sbjct: 55  KDHIPTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVLADFSRYIEDKKVLNI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  + EE  +    + S +   E++  +   ++E D+  AL  ++  
Sbjct: 114 -------------ITEVQEEFDNQRYPIESLLFKFESF--LKPNMTEEDMLKALTRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+  +  +        +++ L         E+G+   
Sbjct: 159 LTSKESPDWEIIAARFLMYQIDLEIEKSEERYELFDFKSKIEFL--------TEKGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326
            + E+    ++  L   + Y R+  F Y GL +L  RY + +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSSEEIDELEKYMDYSRNNIFTYSGLDLLRKRYLITNHKGDLIERVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEADKVAFAKRLYDILSNLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K      NA W +F P
Sbjct: 391 AVAVYLDIWHKDIPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKLTRDDINADWHMFDP 450

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D YG+EFE  Y          +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKALEDTYGEEFEEFYHKLVAD----KDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           +I  +D  N  +P +H G+++SSNLCTEI  N S  E+                      
Sbjct: 507 FIFNRDIVNKANPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N+  D   L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVNDPTD---LEETVRTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAVE-IADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +   +A E   D   E I+++AI  S+E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIRWQDEKAHEDFVDRVYEDINYYAIKESMEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G +                        W+ELK+ VK+ G+RN   MA+APT + + I
Sbjct: 684 WDTGAY--------------FDQRDYKSERWEELKEEVKSNGLRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKG----AIVPRVAPGLTTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQ+ IDQAQS+N+Y   E + +++  +Y  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQRHIDQAQSVNIYITTEYTMRQILNVYITAWE 818

Query: 895 MGLKTTYYLRSRSATSVE 912
            G+K+ YY+R +S    E
Sbjct: 819 SGVKSIYYVRGKSLEVEE 836


>gi|320538425|ref|ZP_08038293.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
 gi|320144720|gb|EFW36468.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
          Length = 845

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/924 (29%), Positives = 441/924 (47%), Gaps = 119/924 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    ++  KI RAI  AF +V    AS    +  I+ +LT +    +   +K
Sbjct: 1   MEIIKRNGERRPYEAEKIGRAIRAAFDSV---PASPHTDIGKIVDSLTMEIEGDIKDLSK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI- 147
           +  +V +E IQD VE +L++  ++   + ++LYR +R+  R A+   +   P      + 
Sbjct: 58  NGNLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVDRTKKRDARKTIEQSFPTIDVRSVL 117

Query: 148 --MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             + +D T   +N                     ++  + +    + +SE +    LI +
Sbjct: 118 LEVQNDFTEDEYNLN-------------------LLSHKFHSFKKNDMSERECLNLLIKA 158

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P +  + +R L+     E+   + K+   + + ++  L         E G+
Sbjct: 159 AVELTAQEAPRWELIASRLLMLSFTEELSVELEKRNIHSFYEKISYLE--------ENGL 210

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMR 323
               + +     +L    + +  ER+    Y  L +L  RY +   G   +E PQ  F+ 
Sbjct: 211 YGDYIRKHYTKEELETAFSYIDTERNKLLTYSSLDMLLRRYVIRTRGHIPLETPQEMFLG 270

Query: 324 VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E EK      +FY++LS      +TPT+ N+   + QLSSCF+ TVPD L G
Sbjct: 271 IALHLAMLEKEKRMYWVKQFYDMLSKLQVTMATPTISNARKPYHQLSSCFIDTVPDSLDG 330

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G
Sbjct: 331 IYRSIDNFAKISKFGGGMGLYFGKVRAVGSPIRGFQGAAGGIIRWIKLANDTAVAVDQLG 390

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF K V    NA W 
Sbjct: 391 VRQGSVAVYLDIWHKDVPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKTVRDDINASWY 450

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D +G E+E  Y++  + +   +    R+I    L R +L    E
Sbjct: 451 LMCPHEILSVKGYSLEDYFGDEWEKRYKDCVQDSRISK----REIPIKELVRLILKSAVE 506

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------- 593
           TG P+  ++D  N  +P  H G+++ SNLCTEI  N S                      
Sbjct: 507 TGTPFAFYRDAANKTNPNGHKGMIYCSNLCTEIAQNMSPIQSQSQEIKTVDGETVVVTTT 566

Query: 594 -SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S+ L         D  +L   + + VR LDNVID+N + +  AK +N  
Sbjct: 567 KPGDFVVCNLASLVLGNIEVT---DRKELQRIVYSVVRALDNVIDLNYYPVPYAKITNGQ 623

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L   +I + S E +   D+  E I+F AI AS+++A+E+G+Y  F+
Sbjct: 624 YRAIGLGTSGYHHMLAKQNIAWESEEHLRFVDKVFEDINFAAIEASMQIAKEKGSYLYFE 683

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                    +   W  L+K V+T GMRN   +AIAPT++ 
Sbjct: 684 GSDWQTGAYFTK--------------RNYTSERWQALQKEVQTSGMRNGYLLAIAPTSST 729

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 730 SIIAGTTAGTDPVMKRYFLEEKKGALMPRVAP----ALSMKTFW---------------- 769

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
                      ++  A  ID  W + +A  RQ+ +DQAQS+NLY+    + KK+  +Y +
Sbjct: 770 -----------LYKNAHLIDQEWSMRAAGVRQRHVDQAQSVNLYITTDYTFKKVLGLYLK 818

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+K+ YY+RS+S    E  T
Sbjct: 819 AWEEGVKSIYYVRSQSLEVEECET 842


>gi|258511566|ref|YP_003185000.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478292|gb|ACV58611.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 772

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 396/816 (48%), Gaps = 85/816 (10%)

Query: 122 REERSDVRAAQSHSKSD--APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           R  + ++R+ ++    +          +   DG +   +  ++   ++  C   +    +
Sbjct: 3   RTGQGELRSGRASHALEEWRDRVKTFTVEKRDGRIEPLSLDKIFAFLKRGCEAAEGCDPE 62

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238
            + ++ +  + DG+  S++    I ++       EP +  V AR LL    ++       
Sbjct: 63  RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLFDAYKQA-----S 117

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
           + +   H      Y +        G     + +   + ++  LA  +K ERD+ F Y+GL
Sbjct: 118 RNRGYRHLGYGDFY-QLIVELERIGRYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGL 176

Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           + L DRY +  ++   +E+PQ  FM V+M LA+KE +K   A  FY++LS+     +TPT
Sbjct: 177 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 236

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+     QLSSCF+    DDL  I+   +  A ++K+ GG+G     +R  G+ I   
Sbjct: 237 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 296

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S GV+P+++  N+TAV+ NQ G R GA   YL+ WH D+ +FL LR N GD+R + H
Sbjct: 297 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 356

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRG 532
           D+     IPDLFM+RV +   W LF P EV       L D +G+EFE  YE      +  
Sbjct: 357 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 416

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +    +I A+ + ++++   FETG P+I F+D  N  +P +H G+V+ SNLCTEI  N 
Sbjct: 417 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 472

Query: 593 SSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           S                     +  VCNL S+NL         D D +   +R  +R +D
Sbjct: 473 SPSRRIEETEEGGIITMKTEAGDFVVCNLSSLNLGRCR-----DLDSIREIVRRQIRAMD 527

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N + + +A  +N  +RA+GLG+ G+   L    IP+ S   V+ ADE  E+I+F 
Sbjct: 528 NVIDLNHYPVPQAAVTNRKYRAVGLGVSGYHQYLAEKGIPWESEAHVKHADELFEWINFF 587

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           AI AS+ELA+E+G Y  F+GS W  G +  D  G            R     WD L++ V
Sbjct: 588 AIEASMELAREKGPYPLFEGSDWQTGRYF-DLRGY---------RTRPGGPDWDGLRREV 637

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RN+  +AIAPT++ + I G +  IDP Y   +++   +G    V       L  +
Sbjct: 638 AEHGVRNAYLVAIAPTSSTSLIAGSTAGIDPVYARFFLEEKKNG----VVPQTAPNLNDK 693

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W                            +  A  ID  W IE+ + RQ+ +DQ+QS 
Sbjct: 694 TFW---------------------------YYKEAHTIDQRWSIEACAARQRHVDQSQSF 726

Query: 874 NLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           NLY     S ++   +Y  AW  GLKT YY+RS+S 
Sbjct: 727 NLYITPGISARQFLDLYLLAWKRGLKTVYYVRSKSV 762



 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +++K   V KR+G +      KI   + +   A EG             + L      +L
Sbjct: 23  DRVKTFTVEKRDGRIEPLSLDKIFAFLKRGCEAAEGCDP----------ERLAADVWPQL 72

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQS-GHHKITREYVLYRE--ERSDVRAAQSHSKSD-A 139
               +++ I  +  IQ  VE + +   G   +    +L+    + S  R  +     D  
Sbjct: 73  RDGMRTSEIARV-AIQAAVEKTSVAEPGWQFVAARLLLFDAYKQASRNRGYRHLGYGDFY 131

Query: 140 PIAPKLKIMMDDGT--LISFNSKRLEMIVE----EACSGLQDVSSKIVLSE-TYKNMYDG 192
            +  +L+ +   GT     ++   +  +      E       V  K +L     +N+ +G
Sbjct: 132 QLIVELERIGRYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGLKQLLDRYAIRNLDNG 191

Query: 193 LSESDL-ETALIFSSRTLIEKEPNYAKVTARF--LLEKLRREVLTTVYKKPQKATHH 246
           +   +L +   +  S  L  KE +      RF  +L  L+  V T      +K  H 
Sbjct: 192 I--MELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQ 246


>gi|313683663|ref|YP_004061401.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156523|gb|ADR35201.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
          Length = 788

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/831 (34%), Positives = 434/831 (52%), Gaps = 104/831 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L I+  +G     +  +++     A  GL +VS   +  +      DG+  ++++  LI 
Sbjct: 2   LTIVKRNGRREPLDITKIQKYTSAAVKGLSNVSQSELEVDAQIQFRDGIHSNEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V +R  L  L   V                      YF R   EG
Sbjct: 62  TAVDKIDIDSPNWTFVASRLFLYDLYHRVNGF-----------TGYGSLQSYFERGEGEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R+L      ++L  L   +  ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 111 ---RILLGLKEKYNLADLDAYIVPERDLEFNYLGVKTLYDRYLIKDRKGDPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            VAM LA  E++++  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AVAMFLAQNESDRQGWAKKFYDMMSKFEVMMATPTLSNARTTRHQLSSCYIGSSPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A +E A+L+K+ GG+G DWT VR +G+ I G    + G +PFLK+ ND A+AV+Q G
Sbjct: 228 IFDAYKEMALLSKFGGGIGWDWTQVRAMGSFIDGHKNAAGGTVPFLKITNDIAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH+DV++FLD++KN+G++RRR HD+  A WI D+FMKRV ++  WT+F
Sbjct: 288 TRKGAIAVYLEPWHMDVKDFLDVKKNSGEERRRAHDLFPALWINDMFMKRVVEDGIWTMF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +V +L +LYG  FE  Y   E+     +        A  LW+K+LT  FETG P++ 
Sbjct: 348 DPFDVKELSELYGDAFEKRYLELEQDPSIPKEHS----KAKDLWKKILTSYFETGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  H G++ SSNLCTEI  N+      +                       
Sbjct: 404 FKDSANRSNPNDHFGIIRSSNLCTEIFQNTQPNHYLIKIKFEDGSFVTYEEDEIVKVDSG 463

Query: 602 ----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L S+                    NL +   +     + +   +  A+R 
Sbjct: 464 IEKPANKITALDSLGGRPIYIVEKEKVDGATAVCNLASVNLSRVHTKEDIDRIVPVAIRA 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + +EK K++N   RAIGLG+MG    L    I + S E  +  DE ME +S
Sbjct: 524 LDNVIDLNFYPLEKVKRTNMRSRAIGLGVMGEAQMLAENRIVWGSQEHFDKVDEVMEAVS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS +LA E+G+Y+ ++GS W +G+ P+D      +   +          WDEL++
Sbjct: 584 YNAIKASSDLAVEKGSYAEYQGSKWSRGILPMDHATAEVQNLVDRGGLFAPNYEWDELRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +K  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 644 TIKRQGMRNGYLMAIAPTSSISILTGTTQTIEPIYKRKWFEENLSGLIPVVAP------- 696

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                   ++  D    +  A+++D   L+++A+ RQKWIDQ Q
Sbjct: 697 ------------------------KLSPDTWSYYTPAYDLDQTILVKAAAIRQKWIDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SLN+++  D+ SGK L+ IY  AW +GLK+TYYLRS+S    + +  + ++
Sbjct: 733 SLNIFITLDKASGKYLNDIYMLAWKLGLKSTYYLRSQSPEQKQDTADRSME 783


>gi|224418360|ref|ZP_03656366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           canadensis MIT 98-5491]
 gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
 gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
          Length = 790

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/871 (33%), Positives = 434/871 (49%), Gaps = 143/871 (16%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI 
Sbjct: 2   LTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L   V      K                   Y+E G
Sbjct: 62  TAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKS---------------LKEYLEIG 106

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      F+L  L   +  +RD  F YLG++ LYDRY L    G  IE+PQ  F
Sbjct: 107 EKENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQNEKDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRR HD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE   D  +      I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVG-----------------------------VVHSSNLCTEITLNS 592
            FKD  N  +P  H G                              +       E+  + 
Sbjct: 403 CFKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDC 462

Query: 593 S---------------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
                                         +TAVCNL SINL           + +   +
Sbjct: 463 GIIKSSNKITSTDSINGKKVFIAQRESIDGKTAVCNLASINLSKINTK-----EDIERVV 517

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A+R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE
Sbjct: 518 PVAIRMLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDE 577

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            ME IS++AISAS +LAQE+G Y+ F  S W +G+FPID     A+   +          
Sbjct: 578 IMEMISYNAISASCKLAQEKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYD 637

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L++ VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   
Sbjct: 638 WDSLREEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPN 697

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                       S+ N           + +A+EID   +I++A+ RQK
Sbjct: 698 L-----------------------SLENW--------NYYTSAYEIDQTLIIKAAAIRQK 726

Query: 866 WIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           WIDQ QS N+++  D+ SG+ L+ IY  AW +GLK+TYYLRS+S                
Sbjct: 727 WIDQGQSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQS---------------- 770

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +    S+     ECE CQ
Sbjct: 771 -----------VEAENTTSAIDRSIECEGCQ 790



 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +   D +KI             K    S+   + +     +   +L   +K
Sbjct: 2   LTVIKRDGRIEPLDVTKIQ------------KYTRDSVVGLEGVSQSELEVDAKLHFRDK 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKI-----------TREYVLYR-EERSDVRAAQSHSK 136
               +  E+IQ     +L+++   KI            R + LY    R +        K
Sbjct: 50  ----ITTEEIQ----QTLIKTAVDKIDIDCPNWTFVAARLF-LYDLYHRVNGFNGYKSLK 100

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVE 167
               I  K   ++  G    FN ++L + ++
Sbjct: 101 EYLEIGEKENRIIK-GMKEKFNLEKLNLKID 130


>gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 788

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/831 (34%), Positives = 429/831 (51%), Gaps = 104/831 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G +   +  +++     A  GL +VS   +  +      D ++  +++  LI 
Sbjct: 2   LTVQKRNGRIEPLDISKIQKYTSSAIKGLDNVSQSELEVDAKIQFRDKITTEEIQKTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                   + EYF R  +EG
Sbjct: 62  TAVDKIDIDRPNWTFVAARLFLYDLYHKVSGF-----------TGYGSFKEYFERCEKEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
              R+       +DL  L   ++ ERD  F YLG++ L+DRY +    G  IE+PQ  FM
Sbjct: 111 ---RIALGLKEKYDLADLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            ++M LA  E   +  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AISMFLAQNELNSQDWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E ++L+K+ GG+G DW  VR +G  I G    + GVIPFLK+ ND AVAV+Q G
Sbjct: 228 IFDSYKEMSLLSKFGGGIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH+D+ +FLDL+KN+G++RRR H++  A WI DLFMKRV  NA WTLF
Sbjct: 288 TRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL ++YG+EFE  Y  YE      E      I A  LW+K+LT  FE+G P++ 
Sbjct: 348 DPAQTPDLCEVYGEEFERRYSAYEHD----ESVTKEYILAKELWKKILTSYFESGSPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  H G++ SSNLCTEI  N+      +                       
Sbjct: 404 FKDSANKVNPNDHAGIIRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVDSG 463

Query: 602 ----------LGSI--------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                     L SI                    NL +   +     + +   +  A+R+
Sbjct: 464 ITKEAKKITALDSIDGKDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAIRM 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RA+GLG+MG    L    I + S E     DE ME IS
Sbjct: 524 LDNVIDLNFYPHAKVKHTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEAIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS  LA E+G Y  F GS W +G+FPID+    A+   +          W+ L++
Sbjct: 584 YNAILASSNLAIEKGVYPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLFGYMYDWESLRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV         
Sbjct: 644 KVKNNGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAP------- 696

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    +  +    +  A+E+D   L+++ + RQKWIDQ Q
Sbjct: 697 ------------------------NLNPNTWTFYTPAYELDQRILVKAGAIRQKWIDQGQ 732

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SLN+++  D+ SGK L+ IY  AW +G+K+TYYLRS+S  +  ++  + ++
Sbjct: 733 SLNIFITLDKASGKYLNDIYMLAWKLGIKSTYYLRSQSPENKLEAIDRSIE 783


>gi|313900055|ref|ZP_07833555.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
 gi|312955107|gb|EFR36775.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
          Length = 838

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/920 (30%), Positives = 442/920 (48%), Gaps = 118/920 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  F+  KI++AI KAF +           +++II+++T+           
Sbjct: 1   MKIQKRDGQLQEFEGEKIAQAIRKAFRSTG--TLIEESVLKEIIEDITKAAAA------- 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              ++ +E +QD VE  LMQ   +K  + Y+LYR++R++ R         A     L  +
Sbjct: 52  DKPMLSVEVVQDLVEEELMQHQFYKEAKNYILYRQKRTESRKVVQDLVH-ALQKEDLYSI 110

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D          ++    +    L+      +L + +  + + +   +    L+ +S  
Sbjct: 111 LAD----------IQQRYPDEGYDLRH-----LLMKFHSFLKEDMESDERLHMLMKASVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI KE P +  + +RFL   L  E+   + K        +++ L         E+G    
Sbjct: 156 LISKEAPKWEYIASRFLSYALHEEISARMQKLELPVFSKKLKYLE--------EQGYYGD 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326
            + ++  D ++  L   LK ERD+ F Y GL+++  RY +  +    +E PQ  FM +AM
Sbjct: 208 YIRKAYSDAEIDELGAYLKDERDYLFTYSGLELVKKRYLMCSHAHEVLETPQEMFMGIAM 267

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E  +   A + Y++LS      +TPT+ N+   + QLSSCF+ TV D L  I+ +
Sbjct: 268 HLALPEQNRMYWAKQIYDILSQLQVTMATPTMSNARKPYHQLSSCFIDTVEDTLNNIYKS 327

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDTA AV+Q G R+G
Sbjct: 328 VDNFAQVSKYGGGMGLYFGKVRANGSDIRGFEGAAGGVIRWIKLVNDTATAVDQLGVRQG 387

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   +  NA W L  P
Sbjct: 388 AVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDLNATWYLMCP 447

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+       L D YG+E+E  Y +  +          R +    L R +L    ETG P
Sbjct: 448 HEIHKIKGYHLEDFYGEEWEERYFDCVQDP----RVPKRTMVLKDLVRLILKSAVETGTP 503

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSEE 596
           +   +D  N  +P  H G+++ SNLCTEI  N                       S   +
Sbjct: 504 FTFNRDHVNRMNPNAHAGMIYCSNLCTEIAQNMKALKLEESRIVEIDGESVVVNESKPGD 563

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S++L     NN+   ++L+  I   VR LDNVID+N + I  AK +N  +R I
Sbjct: 564 FVVCNLASLSLGNIDVNNE---EELSHIIHVIVRALDNVIDLNYYPIPYAKITNRKYRPI 620

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L   ++ + S E ++ AD   E I+++AI AS  LA+E+G+YS F GS W
Sbjct: 621 GLGVSGYHHMLVKQNLRFESEEHLQYADTLFEKINYYAIQASTALAREKGSYSMFAGSDW 680

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G +                    +   W  L ++V+  GMRN+  MAIAPT++ + I 
Sbjct: 681 QSGAYFTK--------------RGYTSDAWSRLFRQVREQGMRNAWLMAIAPTSSTSIIA 726

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  +DP     Y++         V      +L  R  W                    
Sbjct: 727 GTTAGVDPIMNKYYLEEKKGSMIARVAP----DLDARTFW-------------------- 762

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLM 895
                  ++  A  ID  W++ SA  RQ+ IDQAQS+NLY  +E + +++  +Y  AW  
Sbjct: 763 -------LYKNAHLIDQEWVVRSAGIRQRHIDQAQSVNLYITNEFTLRQVLMLYIHAWEY 815

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY+RS+S    E  +
Sbjct: 816 GVKTIYYVRSKSLEVEECES 835


>gi|303234657|ref|ZP_07321286.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
 gi|302494222|gb|EFL53999.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
          Length = 842

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/913 (30%), Positives = 444/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD  KI  A+ KA+ +V           Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRLKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +         K +
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFE---------KFI 105

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            DD  +       +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 106 TDDDVIE-----IIRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +        +    +++Q    +      E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIK-------KLEIQYDLQDFKSK-IKFLDERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +  + +R IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V  +    W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+S     +L D YG E+E  Y          E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRYNECVLD----ESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                         +
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     NN    ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVNND---EELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENGEY--------------FKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         +   +   L  +  W                   
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKG----TIVPRVAPGLSPQTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A E+D    +++ S RQ+ IDQ QS+N+Y+    + + +  IY +AW 
Sbjct: 767 --------LYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|222823071|ref|YP_002574644.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
 gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
          Length = 791

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/824 (35%), Positives = 434/824 (52%), Gaps = 107/824 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A + L +VS   +  +      DG+S  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTTDAVANLDNVSQSELEVDAKIQFRDGISTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V      K               +   Y+E+G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYKKVSGFTGYK---------------HLREYLEKG 105

Query: 264 -VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G  IE+PQ  F
Sbjct: 106 EKEGRILIGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S+F  M +TPTL N+ T   QLSSC++ +  D++ 
Sbjct: 166 MAIAMFLAQNELDSQTWAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + + L DLYG+EFE  YE +E+     E  V   + A  LW+K+L   FE+G P++
Sbjct: 346 FDPADTASLCDLYGQEFEKRYEEFEKD----ESIVKEIVDAKELWKKILLSYFESGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------------ 597
            FKD  N  +P  H G++ SSNLCTEI  N+                             
Sbjct: 402 CFKDSANKTNPNSHAGIIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDG 461

Query: 598 -------AVCNLGSI--------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                   V  L SI                    NL +   +     + +   + TA+R
Sbjct: 462 GYKKLAKKVSTLDSINGKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E  E  D  ME I
Sbjct: 522 MLDNVIDLNFYPHVKVKNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDEL 749
           S+ AI AS  LA E+G+Y  F+GS W +G+ PID     A+       +   S   W++L
Sbjct: 582 SYEAILASSNLALEKGSYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSECDWEKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++++K  G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V       
Sbjct: 642 REKLKRDGIRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPTVVP----- 696

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                      +  +  + +  A+E+D   L+++A+ R KWIDQ
Sbjct: 697 --------------------------NLSANTWQYYTPAYELDQKILVKAAAIRGKWIDQ 730

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            QSLN+++  D+ SG  L+ IY+ AW +G+K+TYYLRS S  S 
Sbjct: 731 GQSLNIFVSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDSQ 774


>gi|265756567|ref|ZP_06090773.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
 gi|263233755|gb|EEZ19370.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
          Length = 839

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/924 (31%), Positives = 448/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +    ++        + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEITDEAVYT------IVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +      +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSKRC----MSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET                  
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHLPLE---DEKQMKEKVATLVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  GV+ I                  +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGVYFIK--------------RGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTYW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      I+ +A+ ID  W I +A  RQ  IDQAQSLNLY  +E + +++  +Y  
Sbjct: 764 -----------IYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWECGVKTIYYVRSKSLEVEECES 836


>gi|212693365|ref|ZP_03301493.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
 gi|212664009|gb|EEB24583.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
          Length = 839

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/924 (30%), Positives = 447/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +    ++        + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEITDEAVYT------IVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  +R  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKIRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +      +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSKRC----MSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET                  
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHLPLE---DEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G + I                  +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGAYFIK--------------RGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTYW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      I+ +A+ ID  W I +A  RQ  IDQAQSLNLY  +E + +++  +Y  
Sbjct: 764 -----------IYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWECGVKTIYYVRSKSLEVEECES 836


>gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
 gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
          Length = 785

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 291/821 (35%), Positives = 430/821 (52%), Gaps = 108/821 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G++   +  +++     A  GL   S   +  +     YDG++   ++  LI ++
Sbjct: 6   VIKRNGSMEELDITKIQKHTSSAVEGLSGTSQSELEVDAKLQFYDGITTERIQDTLIKTA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I+   PN+  V AR  L  L   V         + T +     Y E   R      +
Sbjct: 66  VDKIDVASPNWTFVAARLFLYDLYHRV--------SRFTGYRHLREYFEVGER------E 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRV 324
            +LL      FDL  L + +  +RD  F YLG++ LYDRY L   NG  IE+PQ  FM +
Sbjct: 112 GKLLKGLKEKFDLDLLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMAI 171

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AM LA  E +  + A++FY+ LS+F  MC+TPTL N+ T   QLSSC++ + PD++ GIF
Sbjct: 172 AMFLAQNEKDCNEWAIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGIF 231

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            + +E A+L+KY GG+G D++ VR +G+ I G    + G+IPFLK+ ND A+AV+Q G R
Sbjct: 232 DSYKEMALLSKYGGGIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGTR 291

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA+  Y+E WH DV EF++LRKN+G++RRRTHD+  A WI DLFM+RV Q++ W+ F P
Sbjct: 292 KGAIATYIEIWHNDVTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFDP 351

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +L +LYG EF+  YE  E+        V   + A  LW+K+L   FETG P++ FK
Sbjct: 352 YTCRELTNLYGDEFKKRYEELEKMP----NMVVSSMPAKDLWKKILNSYFETGLPFLCFK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------------------- 599
           D  N  +P  H G++ SSNLCTEI  N+      V                         
Sbjct: 408 DSANRANPNAHSGIIRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGVT 467

Query: 600 ---CNLGSI-----------------------NLLAHFANNQFDYDKLASTIRTAVRVLD 633
                L SI                       NL +   +    ++ +   +  AVR+LD
Sbjct: 468 KRANKLTSIDSLKGKKIFNTQRVQTGGQTAVCNLASINLSKIHTHEDIERIVPIAVRMLD 527

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +   K K +N  +RAIGLG+MG    L    + + S     + D  ME IS++
Sbjct: 528 NVIDLNFYPSRKVKVTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIMEAISYN 587

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           AI AS  LA+ERGAY +++GS W +G+FPID     A+      + R     W+ L+  V
Sbjct: 588 AIKASAMLAKERGAYPTYEGSNWSKGIFPIDKANEKAKA----IVERIFHYDWESLRDLV 643

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K+ G+RN   MAIAPT++I+ + G +Q+I+P Y+ ++ + N+SG    V   L  E    
Sbjct: 644 KSEGIRNGYLMAIAPTSSISILVGTTQTIEPIYKQIWHEENLSGMIKSVVPNLTLE---- 699

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                          + +A+ I+   L+ +A+ RQKWIDQ QSL
Sbjct: 700 ---------------------------TINFYPSAYSINQHDLVRAAAVRQKWIDQGQSL 732

Query: 874 NLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           N+++  D  SGK+L  IY  AW +GLK+TYYLRS+S  + +
Sbjct: 733 NIFIRLDSVSGKQLHEIYMLAWSLGLKSTYYLRSQSKEADD 773


>gi|237726930|ref|ZP_04557411.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           D4]
 gi|229433786|gb|EEO43863.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           dorei 5_1_36/D4]
          Length = 839

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 286/924 (30%), Positives = 447/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +    ++        + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEITDEAVYT------IVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGK++E  Y +    +   +      +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKKWEQKYMDCVNDSRLSKRC----MSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET                  
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHLPLE---DEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G + I                  +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGAYFIK--------------RGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTYW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      I+ +A+ ID  W I +A  RQ  IDQAQSLNLY  +E + +++  +Y  
Sbjct: 764 -----------IYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWECGVKTIYYVRSKSLEVEECES 836


>gi|256545922|ref|ZP_05473277.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398344|gb|EEU11966.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 842

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 281/913 (30%), Positives = 442/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+      S+   + +  ++      + +   
Sbjct: 1   MEVKKRDGQVVDFEREKINRAIFKSFRSVD------SVISDENLDRISLNIEKTIKERYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R           +    +  
Sbjct: 55  KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRK----------VLTDFEAF 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +DD     +    ++ I +E  +    + S  +  E++      +++  L  ALI ++  
Sbjct: 105 IDD----EYTLSIIKDINDEYDNQRYPIESLYLKFESFTK--KNMTKEALLNALIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARF++  +  ++  +  K        ++Q L           G+   
Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYGIVDFRSKVQYLTSA--------GLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + ES  + DL  L   LK +R+  F Y GL ++  RY +    G  IE  Q  FM ++M
Sbjct: 211 YILESYTNKDLEELGAYLKEDRNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E ++   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIGEKDQVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIRNVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF K    N    W +F P
Sbjct: 391 AVACYLDIWHKDIPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE   E Y +  +  EI   R I+   L R ++    ETG P
Sbjct: 451 HEVFVKYGKSIEDTYGEEFE---EFYYKLVNDKEISK-RVIAIKDLIRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           ++  +D  N  +P +H G+++SSNLCTEI  N S  ET                      
Sbjct: 507 FVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D ++L   + T VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I ++  +A ++  D+  E I++ AI AS E+A+E+G+YS F GS 
Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLDFVDKVYEDINYFAIKASNEIAKEKGSYSCFDGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              D           W+ LKK V   G+RN   +A+APT + + I
Sbjct: 684 WDNG--------------DYFKQRGYESERWENLKKDVHENGLRNGYLLAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMNKYFLEEKKG----AIVPRVAPGLNTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y   E + +++  IY  AW 
Sbjct: 767 --------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 AGVKSLYYVRGKS 831


>gi|227485719|ref|ZP_03916035.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236274|gb|EEI86289.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 842

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 277/921 (30%), Positives = 445/921 (48%), Gaps = 116/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI RAI KAF +V+      S    + ++ + ++ V  + +   
Sbjct: 1   MKIIKRDGSKVDFELEKIKRAIFKAFKSVD------STITDEKLEYIAQKIVGTIEEKFP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E++QD VE SL+   +++  + ++LYR + +  R   S           ++I+
Sbjct: 55  VDHVVTVEEVQDLVELSLIDENYYREVKSFILYRAKHNMDRKVISDFTKYVSDKDLMEII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   F+S+R              + S     E++      +++ ++  A+I ++  
Sbjct: 115 SK--VQREFDSQR------------YPIESLYFKFESFTK--PEMNDKEVLDAVIRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL  K+  E+     +        +++ L         E+G+   
Sbjct: 159 LTSKEAPDWEIIAARFLAYKINLEIRQEEERYDIYDFKSKIRFL--------TEKGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E+    ++  L   L Y+RD  F Y GL ++  RY +   +G  +E  Q  FM +AM
Sbjct: 211 YILENYSSAEIDELEKHLDYDRDDIFTYSGLDLIRKRYLITSYDGRLLEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEEDKVSFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIETVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K+V  N    W +F P
Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKQVKNNMEGDWYMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y    ++    +    R +    + R ++    ETG P
Sbjct: 451 HEVEKKYGRAIEDTYGEEFEEFY----KKLVDDKEISRRIMPIKDMVRLLIKSWSETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           +I  +D  N  +P +H G+++SSNLCTEI  N S  ET                      
Sbjct: 507 FIFNRDLVNKYNPNKHKGIIYSSNLCTEIAQNMSPSETVSTEIVTEDGDVVIVNKTKPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     NN     +L  T+RT VR LDNVID+N +    A+ +N  +RAI
Sbjct: 567 FVECNLASLTLGKLDVNNP---KELEETVRTVVRALDNVIDLNYYPTPYAEVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I ++  +A  E+ D   E I+++AI  SVE+A+++G+Y  F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIRWSDEKAHAELVDRVYEDINYYAIKESVEIAKDKGSYKVFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 +   W++L + VK  G+RN   MAIAPT + + I
Sbjct: 684 WQSGAYFTD--------------RDYTSERWEKLAEDVKKYGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKG----AIVPRVAPGLTTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQ+ +DQAQS+N+Y   E + +++  +Y  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGIRQRHLDQAQSVNIYITTEYTMRQILNVYLTAWE 818

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+K+ YY+R +S    E  T
Sbjct: 819 SGVKSIYYVRGKSLEVEECDT 839


>gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
 gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
          Length = 794

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 292/820 (35%), Positives = 434/820 (52%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G     +  +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI
Sbjct: 2   AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V          ATH      Y  +   YI+ 
Sbjct: 62  KTAVEKIDIDVPNWTFVAARLFLFDLYHRV--------GIATHGVKGEAYC-HLKDYIKF 112

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320
           G++A  L  S+ D +DL  L + +   RD  F YLG++ LYDRY +       IE+PQ  
Sbjct: 113 GIEAGRLIPSIADGYDLDELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV DL + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P+
Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYIAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + +KD  N  +P  HVG + SSNLCTEI  N++     +                     
Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468

Query: 601 -----------NLGSIN--LLAHFANNQFD------------------YDKLASTIRTAV 629
                       L S+N   +      + D                   + +   + TA+
Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++ I +S +LA E+G Y +F+GS W +G+ P D          +  +  TS   WD L
Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVVVP----- 702

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                     R+  +    +  AFEID + +I++A+ RQKWIDQ
Sbjct: 703 --------------------------RLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N+++  D+ SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|289450489|ref|YP_003474450.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185036|gb|ADC91461.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 844

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/913 (29%), Positives = 433/913 (47%), Gaps = 118/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG + +F  +KI+ A+ KAF               D +  LTE+    +     
Sbjct: 1   MKIEKRNGQIETFRSAKITAAMAKAF------DGLNVPINDDQLLKLTEKVEKLINTEVA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  ++ +E +QD VE  LMQ G++++ + Y+LYR ER+  R  +        +   +K  
Sbjct: 55  NGYVLKVERVQDLVEKILMQEGYYEVAKSYILYRSERAQKRTMRRQ------LTELVKFQ 108

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             D TL S                  + S  ++L++        +   +    LI ++  
Sbjct: 109 GLDETLRSIQKD----------YKSDNYSLDLLLAKFNSFYKLDMPFQEAMRMLIKAAVE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  + AR ++ ++  ++        +     +++ LY +       EG+  R
Sbjct: 159 LTTQEAPAWEFIAARLMMLQINEQI-------GEVCKQFKLRNLYDK-ISYLENEGLYGR 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + +S    ++    + +  ER+    Y GL +L  RY +H      IE PQ  F+ +A+
Sbjct: 211 YILQSYSKEEIATAESFIVEERNKLLNYSGLDLLCKRYVIHNYRHQIIETPQEMFLGIAL 270

Query: 327 GLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
            LA+ E    E+     +FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 271 HLAMHEKNGDERMGWVRKFYDMLSQLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGI 330

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV+Q G 
Sbjct: 331 YRSITNFAQVSKFGGGMGLYFGKVRAIGSSIRGFQGVAGGVIRWVKLANDTAVAVDQLGM 390

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTL 501
           R+G+V  YL+ WH DV EFL +R N GDDR + HD+  A   PDLF ++V  N    W L
Sbjct: 391 RQGSVACYLDIWHKDVPEFLQVRTNNGDDRMKAHDIFPAICYPDLFWRQVRDNINSSWYL 450

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV       L D YG+E+E  Y +  R          R+I    L R +L    ET
Sbjct: 451 LCPHEVLTVKGYALEDYYGEEWEKRYLDCVRD----NRISKREIPLKELVRLILKSCVET 506

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------------- 594
           G P+   +D  N  +P +H G+++ SNLCTEI  N S                       
Sbjct: 507 GTPFTFNRDIVNRNNPNKHKGIIYCSNLCTEICQNMSEIKQVSLELKDENGDTVVVETTK 566

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L           ++L S + T VR LDNVID+N + +  AK +N  +
Sbjct: 567 PGDFVVCNLASLALGRIDMKRP---EELESIVGTVVRALDNVIDLNFYPLPYAKHTNKAY 623

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R++GLG+ G+   L    I + S E ++  D+  E I++ AI  S+ELA+E+G Y  F+G
Sbjct: 624 RSLGLGISGYHHMLAKNGIAWESEEHLQFVDKIFERINYAAIKTSMELAKEKGKYKYFEG 683

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                +   +   W  L   V   G+RN+  +AIAPT++ +
Sbjct: 684 SDWATGEYFT--------------LRNYTDEKWQSLASAVAKNGLRNAYLIAIAPTSSTS 729

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++        V+   +  EL     W                 
Sbjct: 730 IIAGTTAGLDPVMKRYFLEEKKG----VIMPRVAPELSLNTYW----------------- 768

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                     ++  A  ID  W + +A  RQ+ IDQAQSLNLY+ +  + +++   + +A
Sbjct: 769 ----------LYKEAHLIDQEWTVRAAGVRQRHIDQAQSLNLYVTQNLTFRQILGYFIKA 818

Query: 893 WLMGLKTTYYLRS 905
           W  G+KT YY RS
Sbjct: 819 WENGVKTIYYCRS 831


>gi|150005610|ref|YP_001300354.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           vulgatus ATCC 8482]
 gi|254884473|ref|ZP_05257183.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294778580|ref|ZP_06744002.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|319640835|ref|ZP_07995548.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
 gi|149934034|gb|ABR40732.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           vulgatus ATCC 8482]
 gi|254837266|gb|EET17575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294447529|gb|EFG16107.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|317387647|gb|EFV68513.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
          Length = 839

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/924 (31%), Positives = 446/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F++ + +    ++    I+       V + L  N+
Sbjct: 1   MQIIKRNGTTESYDREKIAVAIRKSFISTQKEITDEAVYT--IVDE-----VEQFLHQNE 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R   S   +   D  IA  L
Sbjct: 54  ANR--SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKVLSQIITGTGDDTIANIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTFLAEKFTSFCK-------------------PDMTSGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E +   +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQNRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKRDLNQQWH 444

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +    +        R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGEEWEQRYMDCVNDS----RLSKRSMSIKDIVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET                  
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHLPLE---DEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+GAY  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLSFMDKVFERINYAAIAASSELAKEKGAYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G + I                  +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGAYFIK--------------RGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTYW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      I+ +A+  D  W I +A  RQ  IDQAQSLNLY  +E + +++  +Y  
Sbjct: 764 -----------IYKSAYLTDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWECGVKTVYYVRSKSLEVEECES 836


>gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
 gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
          Length = 791

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 345/803 (42%), Positives = 484/803 (60%), Gaps = 62/803 (7%)

Query: 15  FPSLAYP-FPEKIKGVQVIKRN------G--GVTSFDPSKISRAIMKAFMAVEGKGASRS 65
            P+++ P FP      QVI+R+      G   V  +   KI++A+  A   VEG+     
Sbjct: 14  LPAVSTPEFP------QVIRRDLPGDTSGKPRVVPWLGHKIAKAVSAACF-VEGQDDQIG 66

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           ++VQ  I+        RL +   S   VHIE +QD VE +L+  GH K+   Y  YR  R
Sbjct: 67  VQVQAEIE-------YRLRRERPS--FVHIEQLQDMVEETLIDLGHAKVALVYGKYRARR 117

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISF----NSKRLEMIVEEACSGLQ-DVSSKI 180
           +  R                 ++ DDG  +          +   +  A  GL+  ++   
Sbjct: 118 AAEREHGIGP-----------VIEDDGQQLELATREQLGDIRARISFAKIGLKVTLNDDD 166

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+   ++    L+  +    ++ ++++L++ + +     AR LL  +  E L       
Sbjct: 167 LLARLLRSTSISLTPVERRDTIVLNAKSLLDVDADARFFAARILLSYIYEETLPWKVADG 226

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +A    ++  + + F  YI  G+    L   + +FDL  LA  L    D  F++LG+Q 
Sbjct: 227 PQA----LKEAHRKAFLEYIPRGIALGRLEPRLAEFDLKKLATALDPFADLQFDFLGIQT 282

Query: 301 LYDRYFLHING------SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           LYDRY +H +        R+E PQ F+MRVAMGL+++E E+E+RA +FY +  S     S
Sbjct: 283 LYDRYLIHTHDSVTGRKQRMEAPQVFWMRVAMGLSVQEPEREERAGQFYGIYKSRRACSS 342

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTLFN+GT HPQLSSC+L    D +  I    +  + L+K++GGLG  WT +RG GAHI
Sbjct: 343 TPTLFNAGTMHPQLSSCYLLYCGDSIEEITETWRRFSHLSKWAGGLGCSWTAIRGAGAHI 402

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           HGTNG+S GVIPFLKV+ND A+AVNQGGKR GA+C+YLE WH D+E+FLDLRK TGDDRR
Sbjct: 403 HGTNGESSGVIPFLKVSNDIAIAVNQGGKRPGALCSYLELWHADIEDFLDLRKETGDDRR 462

Query: 475 RTHDMNTANWIPDLFMKRVT--------QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           RTH+MNTA+WIPDLFMKR+         + A W+LF   E  DL +L G+ FE  Y  YE
Sbjct: 463 RTHNMNTAHWIPDLFMKRLKAISDGTLTKEATWSLFRTSETPDLPELSGRAFEERYLQYE 522

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A  G++   RK+  +ALW++ML MLFETGHPW+TFKDPCN+RSPQ H GV+H+SNLCT
Sbjct: 523 ALAAEGKLW-SRKVRVLALWKRMLEMLFETGHPWMTFKDPCNLRSPQDHTGVIHNSNLCT 581

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EITLN+SS+E AVCNL SINL AH   +   D+D+L +TI   +R+LDNVIDIN + ++ 
Sbjct: 582 EITLNTSSDEVAVCNLASINLAAHLREDGALDHDRLRATITVLMRMLDNVIDINFYPVDA 641

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A  +N  HR +GLGLMG Q AL+   I + +PEAV   DE++E I+++A  AS +LA ER
Sbjct: 642 AANANLRHRPVGLGLMGLQDALYDKGIAFDTPEAVAFNDEALEAIAYYAYEASSDLAAER 701

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G Y ++ GS WD+G+ P+D++  L + R   L ++RTSRL W  L++++   GMRNSNC+
Sbjct: 702 GRYQTYAGSKWDRGLMPLDTLAHLEQQRGVPLMVDRTSRLDWTALRQKIAQQGMRNSNCL 761

Query: 765 AIAPTATIANICGVSQSIDPSYQ 787
           AIAPTATI+NI G  ++      
Sbjct: 762 AIAPTATISNILGARRASSRPTS 784


>gi|237710422|ref|ZP_04540903.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
 gi|229455144|gb|EEO60865.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
          Length = 839

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 287/924 (31%), Positives = 446/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +    ++        + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEITDEAVYT------IVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L   L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFLLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++ +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +      +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSKRC----MSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS ET                  
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RSGDFVVCNLASLSLGHLPLE---DEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G + I                  +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGAYFIK--------------RGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTYW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                      I+ +A+ ID  W I +A  RQ  IDQAQSLNLY  +E + +++  +Y  
Sbjct: 764 -----------IYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWECGVKTVYYVRSKSLEVEECES 836


>gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter
           butzleri RM4018]
 gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter
           butzleri RM4018]
          Length = 794

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 292/820 (35%), Positives = 433/820 (52%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G     +  +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI
Sbjct: 2   AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V          ATH      Y  +   YI+ 
Sbjct: 62  KTAVEKIDIDVPNWTFVAARLFLFDLYHRV--------GIATHGVKGEAYC-HLKDYIKF 112

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320
           G++A  L  S+ D +DL  L   +   RD  F YLG++ LYDRY +       IE+PQ  
Sbjct: 113 GIEAGRLIPSIADGYDLDELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV DL + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P+
Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYVAYEND----ETITKDRMKAKDLWKKILTSYFEVGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + +KD  N  +P  HVG + SSNLCTEI  N++     +                     
Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468

Query: 601 -----------NLGSIN--LLAHFANNQFD------------------YDKLASTIRTAV 629
                       L S+N   +      + D                   + +   + TA+
Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++ I +S +LA E+G Y +F+GS W +G+ P D          +  +  TS   WD L
Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDLFDTS-YDWDVL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVVVP----- 702

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                     R+  +    +  AFEID + +I++A+ RQKWIDQ
Sbjct: 703 --------------------------RLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N+++  D+ SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|227501019|ref|ZP_03931068.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216792|gb|EEI82190.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 842

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 281/918 (30%), Positives = 444/918 (48%), Gaps = 116/918 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   SF+  KI +AI KAF +V+      SI  +D ++ ++++    + +   
Sbjct: 1   MEIIKRDGTRASFERVKIEKAIAKAFNSVD------SIISKDDLEKMSKRIEETIREKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              IV +E+IQD VE +L+   +++  + ++LYR + +  R               L I 
Sbjct: 55  KDHIVSVEEIQDLVELTLIDENYYREVKSFILYRAKHNMDRKIIGDFSKYISDKEVLAI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I  E  +    + S +   E++  +   ++E D+  A+  ++  
Sbjct: 114 -------------ITRIQTEFDNQRYPIESLLFKFESF--LKANMTEEDMLKAITRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+  +  +        ++  L         E G+  +
Sbjct: 159 LTSKEAPDWEIIAARFLMYQINLEIEKSEERYELFDFKAKIAFL--------TENGLYGK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326
            + E+    ++  L + + + RD  F Y GL ++  RY + +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSKDEIDELESYMDFTRDDIFTYSGLDLVKKRYLITNHQGDLIEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKDKISFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF +      NA W +F P
Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y+         +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKAIEDTYGEEFEDFYKKLVED----KDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           +I  +D  N  +P +H+G+++SSNLCTEI  N S  E+                      
Sbjct: 507 FIFNRDAVNRLNPNKHMGMIYSSNLCTEIAQNMSPSESVSTEIIDENGDTIIVNKTRPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D  +L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVN---DASELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I + + +A  E  D   E I+++AI  S+E+A+E+GAYS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDISWQNEQAHGEFVDRVYEDINYYAIKESLEIAKEKGAYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +       W+EL+  +K  G+RN   MAIAPT + + I
Sbjct: 684 WESGAY--------------FDLRDYKSQRWEELRGEIKRHGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKG----AIVPRVAPGLTTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                    +  A +ID    +  A  RQ+ IDQAQS+N+Y   E S ++L  IY  AW 
Sbjct: 767 --------FYENAHDIDQNISMRMAGIRQRHIDQAQSVNIYITTEYSMRQLLNIYISAWE 818

Query: 895 MGLKTTYYLRSRSATSVE 912
            G+K+ YY+R +S    E
Sbjct: 819 SGVKSIYYVRGKSQEVEE 836


>gi|307564964|ref|ZP_07627481.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346277|gb|EFN91597.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 839

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/921 (29%), Positives = 435/921 (47%), Gaps = 119/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KR+G + ++ PSKI  AI K+F++ E  G  +       I+ +  +    + ++  
Sbjct: 1   MNITKRDGSIEAYTPSKIIIAISKSFISTENTGHQKE------IEEMALEVECFIKENTD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE +LM+ G     + Y+L+R +R++ R    +   +       K++
Sbjct: 55  KR---DVESIQDRVEKTLMKHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G    F S               + S  ++  +        +++ +   ALI ++  
Sbjct: 112 --NGIRQDFRSA--------------EYSVTLLSDKFMSFSKPLMTQKEKMNALIKAAVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L   E P +  +  R L  ++ R +     K    + + +++ L         +EG+   
Sbjct: 156 LTTAECPKWEMIAGRLLSFQINRNIDEVERKLGISSFYDKIRYL--------TDEGLYGG 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E+    D+ +    +   R++ F Y GL +L  RY +   +   IE  Q  +M +A+
Sbjct: 208 YILENYSKEDIAWAEKRMDNSRNYLFNYSGLDLLSKRYLIRTFDHKIIERIQEMYMGIAL 267

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E E       + Y+LLS      +TPTL N+     QLSSCF+ TVPD L GI+ 
Sbjct: 268 HLAMPEKENRLSWVGKIYDLLSKLEVTMATPTLSNARKPSHQLSSCFIDTVPDSLIGIYR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G R+
Sbjct: 328 SIDNFAQVSKFGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   QN    W LF 
Sbjct: 388 GAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQNLDQNWVLFC 447

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P+E+       L D YG+E+E  Y+              R IS   L R +L    ETG 
Sbjct: 448 PNEILRVKGYALEDFYGEEWERHYQEC----IDDTRLSRRVISIKDLIRLILRSAVETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+   +D  N  +P  H G+++ SNLCTEI  N +                         
Sbjct: 504 PFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAAIEEISQEVKTENGDKVVVTTVKPG 563

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL S++L         D D +   I T VR LDNVID+N + +  AK +NH +R+
Sbjct: 564 EFVVCNLASLSLGRLPLE---DKDAMCDKINTVVRALDNVIDLNFYPVPFAKITNHRYRS 620

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL    I + S   +E  DE  E I++ AI AS ++A+E+G+Y  F GS 
Sbjct: 621 IGLGVSGYHHALAKRGIKWESDRHLEFMDEVFETINYAAIKASSDIAKEKGSYEYFNGSD 680

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +         +              W  L+++V+T GMRN+  +A+APT++ + +
Sbjct: 681 WQTGAYFKKRDYRSDK--------------WKHLQEKVQTQGMRNAYLLAVAPTSSTSIL 726

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP  Q  +++         V      EL  +  W                   
Sbjct: 727 AGTTAGLDPIMQRFFLEEKKGAILPRVAP----ELSDKTYW------------------- 763

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A+ I+  W + ++  RQ+ IDQAQS+NLY  ++ + +++  +Y  AW 
Sbjct: 764 --------MYKGAYYINQQWSVRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLLAWK 815

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+KT YY+RS+S    E  +
Sbjct: 816 CGVKTIYYVRSKSLEVEECES 836


>gi|293401950|ref|ZP_06646090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304608|gb|EFE45857.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 835

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 280/923 (30%), Positives = 442/923 (47%), Gaps = 129/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G + +FD  K+ +A+ KAF+A             D+  +  +Q    + Q  +
Sbjct: 3   MKIIKRDGTIQTFDSEKMIQAMKKAFVA-------------DVPMDQLKQIAMEITQEIQ 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
            +  V +EDIQD VE  LM    +   + Y+LYRE+R + R       H   D  + P  
Sbjct: 50  GSAKVSVEDIQDLVEQKLMAYQFYNEAKAYILYREKRKEKRQMLLELCHEVQDEKLLPIF 109

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D     F+               +      +  + +  + + +   +    L+ +
Sbjct: 110 MQIQKD-----FD---------------ETYDLHALYIKFHSFLKETMGHEERLQMLMKA 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
              LI KE P +  + ARFL  +L +E+   + +    + + ++Q L         ++G+
Sbjct: 150 CVELISKETPKWEYIAARFLSYQLHQEINARMKQLQLTSFYEKIQYLS--------KQGL 201

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323
               + ++    ++  L   +K ERD  F Y GL+++  RY L  +    +E PQ  FM 
Sbjct: 202 YGAYMLDAYQKEEIDELKRYVKDERDALFTYSGLELVVKRYLLRTHDLQLMETPQEMFMG 261

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ ET +   A + Y++LS+     +TPT+ N+   + QLSSCF+ TV D L  I
Sbjct: 262 IAMHLAIPETNRVYWAKQIYDILSTLKVTMATPTMANARKPYHQLSSCFIDTVADTLANI 321

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDTA AV+Q G 
Sbjct: 322 YKSIDNFAQISKYGGGMGLYFGKVRANGSDIRGFKGAAGGVIRWIKLVNDTATAVDQLGV 381

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   +  NA W L
Sbjct: 382 RQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAICYPDLFWKMAKEDLNATWYL 441

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y +    A   +    R++    L R +L    ET
Sbjct: 442 MCPHEIGKVKGYQLEDFYGEEWEERYFDCVNDARISK----REMILKDLVRLILKSAVET 497

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N S                       
Sbjct: 498 GTPFTFNRDQVNKMNPNGHKGMIYCSNLCTEIAQNMSAITLTEPQIIKVDEEEIVVNKSK 557

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L      N+    +L+  I T VR LDNVID+N + I  A+ +N  +
Sbjct: 558 PGDFVVCNLASLSLGNIDVTNK---QELSHIIHTIVRALDNVIDLNYYPIPYAEITNRQY 614

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG+ G+   L    + + S E ++  D   E I+ +AI AS  LA+E+G+Y  FKG
Sbjct: 615 RAIGLGVSGYHHMLVKQGLRFESEEHLQFVDTLFETINAYAIQASNVLAKEKGSYQYFKG 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WD G +                        W +L + V T GMRN+  +A+APT++ +
Sbjct: 675 SDWDSGAYFTK--------------RGYQNECWQKLAQDVHTYGMRNAYLLAVAPTSSTS 720

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP     +++         V      +L  +  W                 
Sbjct: 721 IIAGTSAGVDPIMNKYFLEEKKGSMIARVAP----DLNPQTFW----------------- 759

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                     ++  A +I   W++++A  RQ+ IDQAQS+NLY  +E + + +  +Y QA
Sbjct: 760 ----------LYKNAHQIQQEWIVKAAGIRQRHIDQAQSVNLYITNEFTLRTVLNLYIQA 809

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS++    E  +
Sbjct: 810 WENGVKTLYYVRSKALEVEECES 832


>gi|332297026|ref|YP_004438948.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
 gi|332180129|gb|AEE15817.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
          Length = 844

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 274/921 (29%), Positives = 435/921 (47%), Gaps = 114/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR G   ++D  KI  AI KAF +            +D+ +      +T + +   
Sbjct: 1   MEIIKRTGKTETYDGQKIINAITKAFKSTG----------RDVPQTTLRALLTSVEEKLD 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E IQD VE +LM+S      + Y+L+R++RS+ RAA+    +       +++ 
Sbjct: 51  RETVKSVEKIQDLVEQALMESLFFAEAKSYILFRQKRSEFRAARKELCA------LIRVD 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G       +++   ++++    +  S K + ++      + ++ES+   ALI ++  
Sbjct: 105 SGEGET---PLEKVFSGIQKSYQD-ESYSLKTLSAKYVSFSKENMNESERLAALIRAASE 160

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+  E P +  +  R L    R  +     +   K+ + +++ L         E G+   
Sbjct: 161 LVSPEAPKWEFIAGRLLNYSFRHRLRADTERLGLKSFYDKLEYL--------TEAGMYGS 212

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + +S    ++   A  +  ERD  F Y GL +L  RY +       +E PQ  F+ +A+
Sbjct: 213 YILKSYTKAEIEEAAAFIVPERDDLFTYSGLDLLLKRYVIRTGKHVPLETPQEMFLGIAL 272

Query: 327 GLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E  E+      FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 273 HLAMNEPAERMNWVRRFYDMLSRMEVTMATPTLANARKPYHQLSSCFVDTVPDSLNGIYR 332

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + G+I ++++ NDTAVAV+Q G R 
Sbjct: 333 SIDNFAKVSKFGGGMGMYFGKVRAAGSAIRGFEGAAGGIIRWIRLVNDTAVAVDQLGVRA 392

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           GAV  YL+ WH D+ EFL++R N GDDR + HD+      PDLF K   +N    W L  
Sbjct: 393 GAVAVYLDAWHRDLPEFLNIRTNNGDDRMKAHDVFPGVCYPDLFWKMAKENLDQDWYLMC 452

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D +G+E+E  Y +             R +S   + R +L    ETG 
Sbjct: 453 PHEICTVKGYHLEDFWGEEWEKRYADCVHD----NRIAKRAVSVKDIVRLVLKSAVETGT 508

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------------------- 597
           P++  +D  N  +P  H G+++ SNLCTEI  N S  E+                     
Sbjct: 509 PFVFNRDTVNRANPNAHRGMIYCSNLCTEIAQNMSGIESVSTQITVQNGETVVVHTTKPG 568

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S++L         D   L S +RTAVR LDNVID+N + +  A+ +N  +R 
Sbjct: 569 SFVVCNLASLSLGNLPLE---DTAYLQSVVRTAVRALDNVIDLNFYPVPYAEITNRAYRP 625

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL    I + S E +  AD   E I+  A+ AS + A E+GAYS F GS 
Sbjct: 626 IGLGVSGWHHALAKRAIKWESDEHLAFADRVFETINRAAVEASSDNAAEKGAYSCFDGSD 685

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +               A        W  L ++V+  GMRN+  +A+APT++ + I
Sbjct: 686 WQTGAY--------------FAKRGYDSAEWRALAQKVRAQGMRNAYLLAVAPTSSTSII 731

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  IDP  +  +++       T     L  E                          
Sbjct: 732 AGTTPGIDPVMKRWFLEEKKGYMLTRTAPELGPE-------------------------- 765

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                    +  A +ID  W I S   RQ+ IDQAQS+NLY  +E + +++  +Y  AW 
Sbjct: 766 -----TWWYYKNAHQIDQKWSIRSCGIRQRHIDQAQSMNLYITNEYTMRQVLDLYLLAWE 820

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+K+ YY+RS+S    E  +
Sbjct: 821 CGVKSVYYVRSKSLEVEECES 841


>gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 794

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 294/820 (35%), Positives = 436/820 (53%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L I   +G     +  +++ +   A  GL+ VS   +  +      DG+S SD++ ALI
Sbjct: 2   ALMIQKRNGRKEVLDITKIQKMSIAATEGLEGVSQSELELDAQIKFIDGMSSSDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  +  L   V         + T+      Y  +   YI+ 
Sbjct: 62  KTAIEKIDIDVPNWTFVAARLFIFNLYHRV--------GRTTNSVKGEAYS-HMSDYIKT 112

Query: 263 GVKA-RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
              A R++      +DL  L N LK ERD  F YLG++ LYDRY +   N   IE+PQ  
Sbjct: 113 AQDAGRMIPGLERGYDLEDLNNYLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ RA EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMGIAMFLAQDEDDKQARAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I G    + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +FLDL+KN+G++RRR HD+  + WI DLFM+R+ +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P++V DL +L+G  FE  Y  YE         V  +I A  LW+K+LT  FE+G P+
Sbjct: 353 LFDPNDVKDLSELHGDAFEKRYIEYEND----NSIVKDRIKAKDLWKKILTSYFESGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGSINLLAHFANNQFD 617
           + FKD  N  +P  HVG + SSNLCTEI  N++  +  +    + GSI L       + D
Sbjct: 409 LCFKDNANRANPNAHVGHIRSSNLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVD 468

Query: 618 ------------------------------------------------YDKLASTIRTAV 629
                                                            + +   + TA+
Sbjct: 469 SGIIKKANKVTALDSVGGKKIFIVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S + ++  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++AI +S ELA E+G Y +F GS W +G+ P D          E  +  T    WD L
Sbjct: 589 ISYNAIKSSAELAVEKGKYPTFDGSNWSKGIMPHDHAPQAVNALVEKDLFDTG-YDWDAL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + +VK  GMRN   MA+APT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 RAQVKKDGMRNGYLMAVAPTSSISILVGTTQAIEPVYKRKWYEENLSGLIPVVVP----- 702

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                     ++  +    +  A+E+D + +I++A+ RQKWIDQ
Sbjct: 703 --------------------------KLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQ 736

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N++  LD+ SGK +  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFLSLDKASGKYMHQIYTLAWQLGLKSTYYLRSQS 776


>gi|223983471|ref|ZP_03633657.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
 gi|223964643|gb|EEF68969.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
          Length = 841

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 281/921 (30%), Positives = 431/921 (46%), Gaps = 117/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+  V ++D  KISRA+  AF +V          + ++ K      V   ++   
Sbjct: 1   MEIIKRDQSVQAYDRRKISRAVSAAFASVGHP-------LPEMTKEAILDQVEVQIRGAA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E IQD VE +LM+   ++  R Y+LYR+E + +R      +   P    L   
Sbjct: 54  ETAPVSVEQIQDWVEQALMRQNCYEEARHYILYRQEHARLRDQIDQLRRIIPDPEILATC 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                       +L+    +    L       ++ +      + +  S     LI +   
Sbjct: 114 R-----------QLQRDFSQPAMSLD-----ALIQKVQAFSKEKMKRSQQLDNLIRACVE 157

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ +E P++ K  ARF++ KLRR V   +  +  +    ++  LY E       +G+  +
Sbjct: 158 LVSQEAPDWEKAAARFMMIKLRRSVSQRMEAQGIRTLAQKL--LYLEA------QGLLNK 209

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAM 326
            L E     DL  L   +  ERD  F   GL++L  RY +  + G  +E+PQ  FM +AM
Sbjct: 210 DLSEHYSYNDLNRLEQAIDNERDQLFNASGLELLIKRYLIRDHQGEVLELPQEMFMGIAM 269

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E +   + A++ Y++LS      +TPTL N+     QL+SCF+  VPD L GI+ 
Sbjct: 270 HLAIPEGKNRVEWAIKIYDVLSQLQVTMATPTLANARKPKAQLASCFIDVVPDSLKGIYK 329

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +L   A ++K  GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G R+
Sbjct: 330 SLDSFAQISKQGGGMGLYFGKVRASGSDIRGFQGAAGGVLRWIRLVNDTAVAVDQLGVRQ 389

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GAV  YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF +      +  W L  
Sbjct: 390 GAVAVYLDCWHRDLPEFLQIRTNNGDDRMKAHDVFPAVCYPDLFWRMAKASLDQNWYLMD 449

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P ++       L D  G+ +E  Y+     +        R I    L R +L    ETG 
Sbjct: 450 PHQIQTVKGYALEDCTGELWEQRYQECVADSRI----EKRVILLKDLVRLILKSAAETGT 505

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------E 595
           P++  +D  N  +P  H GV++ SNLCTEI  N +                         
Sbjct: 506 PFVFNRDLVNAMNPNGHRGVIYCSNLCTEIAQNIAPAGEIETRMTEIDGEMVIIEQAKAG 565

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL S+NL      N  D ++L S I   VR LDNVID+N + + +A+++    RA
Sbjct: 566 EMVVCNLASLNLGRL---NTEDEEELRSVIEVTVRALDNVIDLNAYPLPQAQRTASRSRA 622

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G    L    I + S E +  AD+  E I+++AI AS++LAQE+G Y+ F+GS 
Sbjct: 623 IGLGVSGLHHWLAKRSIFFESEEHLNAADKLFEAINYNAIRASLQLAQEKGRYADFEGSD 682

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +                    +   W  L K V   G+RN   +AIAPT++ + I
Sbjct: 683 WQTGAYFTK--------------RGYTSDAWQTLAKEVARYGLRNGWLLAIAPTSSTSVI 728

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V      EL ++  W                   
Sbjct: 729 AGTSAGVDPIMNKFFLEEKKGSIIARVAP----ELNEKTYW------------------- 765

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                    +  A +ID  W++ +A  RQ+ IDQAQS+NLY+    S + L  +   AW 
Sbjct: 766 --------YYKKAHQIDQTWVVRAAGVRQRHIDQAQSVNLYITTDYSLRDLLNLMILAWE 817

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+KT YY+RS+S    E  +
Sbjct: 818 KGVKTLYYVRSQSLEVEECES 838


>gi|320120416|gb|EFE27702.2| ribonucleoside-diphosphate reductase, alpha subunit [Filifactor
           alocis ATCC 35896]
          Length = 842

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/918 (30%), Positives = 444/918 (48%), Gaps = 116/918 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q++KR+G    FD SKI  AI KAF++V       S +++ ++  + E+  T+      
Sbjct: 1   MQILKRSGEKREFDTSKIETAIQKAFLSVGLP--VDSEKIRSMVDTIEERVRTQF----P 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              IV +E+IQD VE  L+++ ++ + + Y+LYR     +R           +    +  
Sbjct: 55  KGHIVTVEEIQDLVEIVLIENNYYAVVKSYILYRASHHTMRK----------VIEDFEDY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             D +++    + ++ I  E    L       +  +    +   ++E +    LI ++  
Sbjct: 105 FSDKSIVE-ELREIQKIFTEDVYNL-----TFLFQKFKAFIKTNMTEEEYLGILIRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P +  V AR L  +L + +     +    +   ++  L         +E     
Sbjct: 159 LTSKEAPKWEFVAARLLSLQLNKRIEERANRLELYSFRDKIHYL--------TKEKRYGD 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E   + ++  L + LK ERD+ F Y GL ++  RY +    G  +E  Q  FM +AM
Sbjct: 211 YILEQYQEDEIDELESYLKQERDYLFNYSGLDLVIKRYLITDREGEVLEKVQEMFMGIAM 270

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E E + K A + Y+++S      +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 271 HLAIPEKENKVKWAKKIYDVISQLKVTMATPTMSNARKPFHQLSSCFIDTVPDTLDGIYR 330

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   + ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 331 SITNFSQVSKHGGGMGLYFGKVRAMGSDIRGHKGVAGGVIRWIKLANDTAVAVDQLGVRQ 390

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503
           GA   YL+ WH DV EFL +R N GDDR + HD+  A  +P+ F K   +N    W +  
Sbjct: 391 GACAVYLDIWHKDVPEFLQIRTNNGDDRMKAHDVFPAICVPNYFWKLAKENRDANWYMMC 450

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D YG+E+E  Y++    +   +    R I+   + R +L    ETG 
Sbjct: 451 PHEIEQVKGFRLEDCYGEEWEEKYQSCIEDSRIDK----RVITIKDMVRLILRSAIETGT 506

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSE 595
           P++  +D  N  +P  H G+++SSNLCTEI  N                       + + 
Sbjct: 507 PFVFNRDIVNEYNPNSHKGMIYSSNLCTEIAQNMQAIESISTEIVVVDGEEIVVEKNKAG 566

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L      N+    +L   + T VR LDNVI++N + +  AK +N  +RA
Sbjct: 567 DFVVCNLASLVLGNIDVKNK---KELEEVVSTVVRALDNVIELNYYPLPYAKITNQKYRA 623

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+  +L    + + S E ++ ADE  E I++ AI  S EL++E+GAY  F+GS 
Sbjct: 624 IGLGTSGYHHSLVKNGMLFQSEEHLKFADEVYEDINYFAIKTSCELSKEKGAYPYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +                        W+EL+K V   GMRN   MA+APT + + I
Sbjct: 684 WSNGNYFDK--------------RNYHSTRWNELRKEVNQYGMRNGYLMAVAPTGSTSVI 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP  +  +++         +   +  +L     W                   
Sbjct: 730 SGTTASIDPVMKRYFLEEKKG----QIVPRVAPDLTAETFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A EID  W+I+SA  RQ+ IDQ+QS+NLY   E S  ++  +Y  A+ 
Sbjct: 767 --------MYENAHEIDQNWVIQSAGIRQRHIDQSQSVNLYITTEFSMSRMLKLYISAYE 818

Query: 895 MGLKTTYYLRSRSATSVE 912
            G+KT YY+RS+S    E
Sbjct: 819 HGVKTIYYVRSKSLEVEE 836


>gi|163781847|ref|ZP_02176847.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883067|gb|EDP76571.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 767

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 275/812 (33%), Positives = 425/812 (52%), Gaps = 82/812 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++   G     +  ++ + +E A  GL  V    + ++      DG++  +++  LI 
Sbjct: 1   MEVVKRSGKREQLDINKIRIALEFAFKGLN-VDPLELETDAQIQFRDGITTEEIQAVLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-- 261
           ++   +  E P++    AR LL  L ++V      + +     + +    E F  +I   
Sbjct: 60  TAAEKVSPETPDWQFAAARLLLYDLYKKVAHIRGYEVRDELSKDYKPYNTEGFYEFINRF 119

Query: 262 --EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
             EG+    L +   + D+  LA  +K ERD  F Y G++IL DRY     +G  IE+PQ
Sbjct: 120 VGEGIYGDYLLKHYSESDIRDLAKHIKPERDLYFNYTGIKILTDRYLARDEDGRIIELPQ 179

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M ++M LA+ E   ++ K A EFY+LLS      +TPTL N+     QLSSCF+ TV
Sbjct: 180 EMYMLISMTLAIPEKEGDRVKWAKEFYDLLSEHLITVATPTLMNARRPFTQLSSCFILTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S G+IP +KV ND   
Sbjct: 240 DDDLYDIFDNVQKAAQISKHAGGLGIYIGKLRATGAPIRKFKGASSGIIPVVKVINDVMT 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH D+ +FL+++ N GD+R++ HD++ A  IPDLFMKRV   
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDILDFLEVKTNAGDERKKAHDIHPAISIPDLFMKRVKNR 359

Query: 497 AGWTLFSPD------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             WTL  P       +  +L DL+G+ FE  YE  E++         +++ A  LW+++L
Sbjct: 360 EKWTLLDPYYTKNVRDGKNLEDLWGEAFEEEYERLEKELPED---AKKEVDAFELWKRLL 416

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
           T+ FETG P++ F+D  N  +P +H G+V+SSNLC EI  N S                 
Sbjct: 417 TVAFETGEPYLFFRDHANRINPNKHAGMVYSSNLCHEIVQNMSPTKHLGKELDPETGEIV 476

Query: 595 -----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +  VCNLGS+NL   +       + +   +   VR+LDNVI++N + I +A+ +
Sbjct: 477 HRKKSGDVVVCNLGSVNLGKVYTK-----ETMEQVVPKLVRLLDNVIEMNYYAIPEAEYT 531

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +RAIG+G+  +   L    + + S + ++ AD+  E + F+AI  S+ELA+ERG Y 
Sbjct: 532 NKRYRAIGIGVSNYHYCLVKNGVNWESEDHLKFADKLFELLGFYAIKGSMELAKERGKYR 591

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W +G+F     G  AE  +E +    + LPW +L + V+  G+RNS  +A+ PT
Sbjct: 592 LFEGSDWSRGIFF----GRKAEELEENSKENGNDLPWKDLAEDVRENGIRNSYLLALMPT 647

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + + I G + S+DP +   Y + NMSG    V   +      R  W             
Sbjct: 648 GSTSLILGATPSVDPIFAKYYKEENMSGILPQVPPEI-----DRFFWH------------ 690

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK--KLDF 887
                          + +A+ ID  W++ +A+ RQKWIDQAQSLNL++D        L  
Sbjct: 691 ---------------YKSAYNIDQEWVVRAAAVRQKWIDQAQSLNLFIDPEKIDGPTLSK 735

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           IY+ AW +GLKT YYLRS+S T +E+     V
Sbjct: 736 IYQLAWELGLKTIYYLRSKSITDIEECESCAV 767



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           ++V+KR+G     D +KI  A+  AF  + V+        ++Q      TE+    L++ 
Sbjct: 1   MEVVKRSGKREQLDINKIRIALEFAFKGLNVDPLELETDAQIQFRDGITTEEIQAVLIRT 60

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKIT 115
               +     D Q      L+   + K+ 
Sbjct: 61  AAEKVSPETPDWQFAAARLLLYDLYKKVA 89


>gi|325831680|ref|ZP_08164897.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
 gi|325486551|gb|EGC89000.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
          Length = 845

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/920 (29%), Positives = 426/920 (46%), Gaps = 117/920 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V       ++   D    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++       F  +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKE-FPGEE---------YELAHLSAKF-----QSFAKPDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +           +      EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETF--------AQKVAFLTEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERPDERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A        R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARI----KKRAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N                       + 
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHIDMG---DPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D                 +   W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------------RGLTDGRWAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY  +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+KT YY+RS+S    E
Sbjct: 820 WEEGMKTIYYVRSKSLEVEE 839


>gi|282860354|ref|ZP_06269422.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586852|gb|EFB92089.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
          Length = 839

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/921 (29%), Positives = 433/921 (47%), Gaps = 119/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G + ++  SKI  AI K+F + E  G  +       I+ +  +    L ++  
Sbjct: 1   MQVTKRDGSIENYTQSKIIAAIGKSFASTENLGHQKE------IEEMALEVENFLKENTS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQD+VE +LM  G     + Y+L+R +R++ R    +   +       K++
Sbjct: 55  KR---DVENIQDKVEKTLMAHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             +G    F                 + S  ++  +        +++ +   AL+ ++  
Sbjct: 112 --NGIRQDFRGA--------------EYSVTLLSDKFMSFSKPLMTQKEKLNALVKAAVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L   E P +  +  R L  +L R +     K    + + +++ L         +EG+   
Sbjct: 156 LTTAECPQWEMIAGRLLSFQLNRSIDEVERKLGLSSFYEKLRYL--------TDEGLYGT 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E     D++     +   R+  F Y GL +L  RY +H  +   IE  Q  +M +A+
Sbjct: 208 YILEHYSQEDIMAAEKKMDTSRNHLFNYSGLDLLSKRYLIHTFDHKVIERVQEMYMGIAL 267

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E E + +   + Y+LLS      +TPTL N+   H QLSSCF+ TVPD L GI+ 
Sbjct: 268 HLAIPEKENRMEWVGKIYDLLSQLEVTMATPTLSNARKPHHQLSSCFIDTVPDSLIGIYR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G R+
Sbjct: 328 SIDNFAQVSKHGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  +  WTLF 
Sbjct: 388 GAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQSLDQNWTLFC 447

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P+E+       L D YG+E+E  Y+     A        R IS   L R +L    ETG 
Sbjct: 448 PNEILRVKGYALEDFYGEEWERRYQECINDA----RLSRRVISIKDLVRLILRSAVETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+   +D  N  +P  H G+++ SNLCTEI  N +                         
Sbjct: 504 PFTFNRDIVNRANPNNHKGIIYCSNLCTEIAQNMAAIEEVSQEVKTENGDKVVITTVKPG 563

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S++L         D + +   + T VR LDNVID+N + +  A+ +NH +R+
Sbjct: 564 DFVVCNLASLSLGRLPLE---DKEAMCDKVATVVRALDNVIDLNFYPVPYAEITNHRYRS 620

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL    I + S   +E  +E  E I++ AI AS  +A+E+G+Y  F+GS 
Sbjct: 621 IGLGVSGYHHALAKRGIKWESDRHLEFMNEVFETINYAAIKASSAIAKEKGSYEYFEGSD 680

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +                    +   W +L+  V   GMRN+  +A+APT++ + +
Sbjct: 681 WQTGAYFKK--------------RDYNSEAWQQLQAHVAQQGMRNAYLLAVAPTSSTSIL 726

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP  Q  +++         V      EL  +  W                   
Sbjct: 727 AGTTAGLDPIMQRFFLEEKKGAMLPRVAP----ELSDKTYW------------------- 763

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A+ I+  W I ++  RQ+ IDQAQS+NLY+    + +++  +Y  AW 
Sbjct: 764 --------MYKGAYYINQQWSIRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLLAWK 815

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+KT YY+RS+S    E  +
Sbjct: 816 SGVKTIYYVRSKSLEVEECES 836


>gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like
           [Xenopus (Silurana) tropicalis]
          Length = 1234

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 347/617 (56%), Positives = 434/617 (70%), Gaps = 16/617 (2%)

Query: 5   KDVNKGDEDAFPSLAYPF--PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
              +       P+ A        +   Q+++RNG V +F+P KI+ A+MKAF+AV G   
Sbjct: 7   TPSSTHANPVLPAFAATARAQSALAHYQILRRNGSVAAFEPQKIAVALMKAFLAVHGTQG 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++++  LT   V  L +        HIED+QDQVE  LM+ GHH++ R YVLYR
Sbjct: 67  AASASVREVVDELTHTVVRALARSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYR 126

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
           E R+             P AP + ++ D+G  +  +  RL  +V  ACSGL  +V  + +
Sbjct: 127 ERRAQ--ERAQQQAQLLPQAPAIHVV-DNGQRVLLDPLRLRALVASACSGLSSEVQPEPI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL        
Sbjct: 184 VAETLRNLYDGIPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQDVAPAA 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                 M   Y   F + I++GV   LL   ++ FDL  LA  L+ +RD  F+YLGLQ L
Sbjct: 244 ------MGEAYANSFPQCIQKGVDNELLDPQLLQFDLPRLAKALQAQRDLQFDYLGLQTL 297

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHFMCSTPT 357
           YDRYFLH+  +RIE+PQ+FFMRVAMGLAL+E + +    +RA+EFY +LSSF FM STPT
Sbjct: 298 YDRYFLHVRKARIELPQSFFMRVAMGLALREGDLQTTGTERAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPD+L GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDNLEGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFMKRV     WTLFSP E  DLHDLYG+ FE AY  YE  ADRGE+ +F
Sbjct: 478 DMNTANWIPDLFMKRVMDKGQWTLFSPSETPDLHDLYGQAFERAYCAYEAMADRGELTLF 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           ++++AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ET
Sbjct: 538 KRVAAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETET 597

Query: 598 AVCNLGSINLLAHFANN 614
           AVCNLGS+NLL H    
Sbjct: 598 AVCNLGSVNLLRHIQGG 614



 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 160/303 (52%), Positives = 216/303 (71%), Gaps = 17/303 (5%)

Query: 667  LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
            L+ L IPYAS  AV  ADESME I ++A  AS ELA+ERG Y+S++GSLW++G+ P+D++
Sbjct: 934  LYELRIPYASDAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDTL 993

Query: 727  GLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             LL + RD  + ++R++RL WD L+K++   GMRN+NC+AIAPTATI+NI GV  SI+PS
Sbjct: 994  NLLQQARDGHVQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEPS 1053

Query: 786  YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            + NL VKSN+SG+FTVVN++LV +LK+  LWD+ M+ DLK+  GS+  I+R P DLK ++
Sbjct: 1054 FGNLSVKSNLSGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKALY 1113

Query: 846  ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+
Sbjct: 1114 ATAFEVEPRWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLRT 1173

Query: 906  RSATSVEKSTLKGVDGKLNAVPVTDPNS--------------STHSLGIPSSCTSDTECE 951
            +SAT VE ST+     +LNAV    P+               +T +  +      D  CE
Sbjct: 1174 QSATHVEMSTVNKR--QLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDPGCE 1231

Query: 952  VCQ 954
             CQ
Sbjct: 1232 ACQ 1234


>gi|325846379|ref|ZP_08169348.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481563|gb|EGC84603.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 842

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 280/913 (30%), Positives = 441/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+      S+  ++ +  ++      + +   
Sbjct: 1   MEVKKRDGKVVDFEREKINRAIFKSFRSVD------SVISEENLDKISLNIENTIKERYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R   +  +S       L I+
Sbjct: 55  KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVLTDFESYIDDDYTLSII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D      ++++R              + S  +  E++      +++  L  ALI ++  
Sbjct: 115 KD--INEEYDNQR------------YPIESLYLKFESFTK--ANMTKEALLNALIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARF++  +  ++  +  K        ++Q L           G+   
Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL--------TSVGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E+  + DL  L   LK ER+  F Y GL ++  RY +    G  IE  Q  FM ++M
Sbjct: 211 YILEAYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIGEKDKVYFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A  +P+LF K    N    W +F P
Sbjct: 391 AVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPNLFWKECRDNIGGDWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE  Y    +     +    R I+   L R ++    ETG P
Sbjct: 451 HEVLVKYGKSIEDTYGEEFEEFYHKLVKD----KEISKRVIAIKDLIRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           ++  +D  N  +P +H G+++SSNLCTEI  N S  ET                      
Sbjct: 507 FVFNRDAVNKANPNKHKGIIYSSNLCTEIAQNMSPSETVNEEIKTVDGETVIVNTTKPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D  +L   + T VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGNIDVN---DKKELEEVVSTIVRALDNVIDLNYYPTSYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I ++  +A +E  D+  E I++ AI AS E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLEFVDKVYEDINYFAIKASNEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G +                        W++LKK V   G+RN   +AIAPT + + I
Sbjct: 684 WDNGDYFT--------------QRGYESERWEKLKKDVHENGLRNGYLLAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMNKYFLEEKKG----AIVPRVAPGLNTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y   E + +++  IY  AW 
Sbjct: 767 --------LYENAYTIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 AGVKSLYYVRGKS 831


>gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 647

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 246/672 (36%), Positives = 374/672 (55%), Gaps = 39/672 (5%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
              GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L
Sbjct: 2   LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
           ++E                    Y        E G+ +    + +       L + + Y+
Sbjct: 61  QKETSG-----------------YATATRELSEIGILSSAYVDFVAKNQFA-LEDMIDYK 102

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD+ F+Y G + L   Y L + G  +E PQ  FMRVA+ +A  + E+ +   E Y+LLS 
Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDDLEEIR---ELYDLLSL 159

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            ++  +TPTLFN+G +  QLSSCFL  +  D + GI+  L++ A+++K +GG+G     +
Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I GTNG S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLR
Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YE
Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R          + I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC 
Sbjct: 340 RMGLG-----VKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EI   S+ +ETA CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K 
Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KSNH HR +GLG+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G
Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            YSS+ GS    G F  D                +SR  W +LK ++   G+RNS  +A 
Sbjct: 515 TYSSYDGSPISHGQFQFDLW----------CEQPSSRWDWSQLKHQIAEHGVRNSLLIAQ 564

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  
Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624

Query: 827 HDGSIGNIERIP 838
           ++GS+  I+ IP
Sbjct: 625 NNGSVQGIDAIP 636


>gi|160915702|ref|ZP_02077910.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
 gi|158432178|gb|EDP10467.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 270/923 (29%), Positives = 435/923 (47%), Gaps = 127/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G + SF   KI  A+ KAF + +       + +  +      + V++L + ++
Sbjct: 1   MNIVKRDGSIQSFHEEKIKDAMRKAFRSTQLPIEEEQLHIMAV------EIVSQLSEGSR 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +EDIQD+VE +LM+  + ++ + Y+LYR +RS+ R A         D  +    
Sbjct: 55  ------VEDIQDKVEEALMKHSYFQVAKNYILYRSKRSEQRKALKSLVEEVQDEGLKEVF 108

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D  +  ++                      +L++    + + ++       LI +
Sbjct: 109 FHIQKDFDMEVYDM-------------------SALLTKLRTFLKETMNSEQRMEMLIRA 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  +I K+ P +  + AR    ++  ++   +           +Q  Y +      +EG 
Sbjct: 150 SVEMISKDAPKWEYIAARLFAYRMHNDIAARMQ-------QLGIQDFYGK-LAYLTKEGY 201

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E+    D+  L   L+ ERD  F Y GL+++  RY +   N   +E PQ  FM 
Sbjct: 202 YGSYILENYTQKDIAELEAYLQDERDQLFTYSGLELVVKRYLMRAHNHDILETPQEMFMG 261

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ E E+   A + Y++LSS     +TPT+ N+   + QLSSCF+  V D L  I
Sbjct: 262 IAMHLAIPEQERVVWAKKIYDVLSSLKATMATPTMSNARRPYHQLSSCFIDCVDDSLMNI 321

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +++  A ++KY GG+G  +  VR  G+ I G  G + G+I ++K+ NDTA AV+Q G 
Sbjct: 322 YKSIENFAQVSKYGGGMGLYFGKVRASGSDIRGYEGAAGGIIRWIKLVNDTATAVDQLGV 381

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF +   +  NA W L
Sbjct: 382 RQGAVAVYLDVWHKDLPEFLNLRTNNGDDRMKAHDIFPALCYPDLFWRMAKEDLNATWYL 441

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y          +    R++    + R +L    ET
Sbjct: 442 MCPHEIHKTMGYHLEDYYGEEWEKRYFECVNDPRISK----REMLLKDIVRLILKSAVET 497

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------------- 594
           G P+   +D  N  +P  H G+++ SNLCTEI  N                         
Sbjct: 498 GTPFAFNRDHVNRMNPNGHEGMIYCSNLCTEIAQNMKPLELLEKEIVEVDGESIVVERSK 557

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S+ L      N     +L   IR  VR LDNVID+N + +  AK +N  +
Sbjct: 558 AGEFVVCNLASLTLGNLDVQND---SELREVIRVLVRALDNVIDLNYYPLSYAKITNRRY 614

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    + + S E +   D   E I+++A+ AS +LA+E+G+Y+ F+G
Sbjct: 615 RPIGLGVSGYHHMLAKQGLRFESEEHLAFVDTLFEKINYYALEASSDLAKEKGSYACFEG 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S +  G +      +  +              W  L+K+VK  G+RN   MA+APT++ +
Sbjct: 675 SDYATGSYFDKRSYVDEK--------------WWNLRKQVKENGLRNGYLMAVAPTSSTS 720

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP     +++       T V      +L     W                 
Sbjct: 721 IISGTSAGVDPIMNKYFLEEKKGSMITRVAP----DLSPATFW----------------- 759

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                     ++  A  ID  W++ +A  RQ+ IDQAQS+NLY  +E + +K+  +Y +A
Sbjct: 760 ----------LYKQAHLIDQSWIVRAAGVRQRHIDQAQSVNLYITNEFTLRKVLNLYIEA 809

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 810 WEQGVKTIYYIRSKSLEVEECES 832


>gi|306819884|ref|ZP_07453538.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552131|gb|EFM40068.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 852

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 268/920 (29%), Positives = 441/920 (47%), Gaps = 120/920 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G +  FD +KI  AI KAF++V  +        ++ +  L+     +   +  
Sbjct: 11  LNIIKRSGQIVPFDTNKIKIAIKKAFISVGMEIE------EEKLNKLSSDVEEKSKNNFP 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E++QD VE +L++ G++ + + Y+LYR    ++R                   
Sbjct: 65  KDHTVSVEEVQDLVEITLIEKGYYAVVKSYILYRASHHNLRK-----------------T 107

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNM-YDGLSESDLETALIFSS 206
           ++D TL  F+ +++  ++ +      +D      L   + +   + +S  +  + LI ++
Sbjct: 108 LEDFTLY-FDDEKIFKLMRKIQEDFKEDAYKLSFLYSKFTSFAKENMSYDEKLSMLIRAA 166

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  KE P +  ++ RF    L  ++  T+ K+      H     + +      +  + 
Sbjct: 167 CELTSKEAPKWEYISGRF----LALQIQNTIEKETTMLDIHS----FADKIRYLTKNKLY 218

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRV 324
              + E+    D+  L   L Y RD  F Y GL ++  RY +   +G  +E PQ  FM +
Sbjct: 219 GPYMLENYSQEDIEELEKYLDYSRDELFNYSGLNLVAKRYLIRDTDGKILESPQEMFMGI 278

Query: 325 AMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM L++ E +K+   A + Y+ LS+     +TPT+ N+     QLSSCF+  VPD+L GI
Sbjct: 279 AMHLSIPEKDKKIHYAKKLYDALSTLKVTMATPTMSNARKCFNQLSSCFIDVVPDNLDGI 338

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR +G+ I G  G + G+  ++K+ANDTAVAV+Q G 
Sbjct: 339 YRSVTNFAQVSKHGGGMGLYFGKVRAMGSDIRGFKGVAGGITRWVKLANDTAVAVDQLGV 398

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GA   Y++ WH D  EFL LR N GDDR + HD+     +P+ F K   +  N+ W +
Sbjct: 399 RQGACSVYIDLWHKDTPEFLQLRTNNGDDRMKAHDVFPGICVPNYFWKLAKEDLNSPWYM 458

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG E+E  Y +  + +   +    R IS   + R ++    ET
Sbjct: 459 MCPHEIETVKGYCLEDCYGDEWEEKYLDCVKDSKIDK----RVISVKDMVRLIIKSAVET 514

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+I  +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 515 GTPFIFNRDIVNKYNPNPHKGMIYCSNLCTEIAQNMEAIQSISSEVKIIDGQEIVVEMTK 574

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L      N    D+L   + T +R LDNVID+N + +  A+ +N  +
Sbjct: 575 PGDFVVCNLASLVLGNIDVKNP---DELEDIVNTVIRALDNVIDLNYYPVPYAQITNQKY 631

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG  G+   L    I + S E ++ ADE  E I++ AI AS +LA+E+G+Y  F+G
Sbjct: 632 RAIGLGTSGYHHTLVQNDIMFQSEEHLKFADELYENINYFAIKASNQLAKEKGSYKYFEG 691

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                    +   W+ELK+ V+  G+RN   MAIAPT + +
Sbjct: 692 SNWQDGQYFTK--------------RNYNSKRWEELKQSVEKDGIRNGYIMAIAPTGSTS 737

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + ++DP  +  +++         V   L      +  W                 
Sbjct: 738 IIAGTTAAVDPVMKRYFLEEKKGQIVPRVAPSLTP----KTFW----------------- 776

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                     ++  A +ID  W+I+SA  RQ+ IDQ+QS+NLY   E + K++  +Y  A
Sbjct: 777 ----------LYENAHDIDQTWVIKSAGIRQRHIDQSQSVNLYITTEYTMKQILQLYITA 826

Query: 893 WLMGLKTTYYLRSRSATSVE 912
               +KT YY+RS+S    +
Sbjct: 827 CEQEVKTLYYVRSKSLEVQD 846


>gi|282881359|ref|ZP_06290038.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304765|gb|EFA96846.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 839

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/923 (28%), Positives = 434/923 (47%), Gaps = 123/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++   K       +  +++++ +   T  ++ N 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFIST--KHEIDDATIYQMVQSVEDIVCTNHIKQN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE +LM++G++   + ++L+R +R+++R                   
Sbjct: 58  ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRI------------- 98

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
                      + +  +++   +   D   S  +++ +       G++ ++   ALI ++
Sbjct: 99  -----TEDLQDEHITEVLKHIAADFTDKEYSILLLIDKYASFSKAGMTATERMDALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR L  +L + +      +   + + +M+ L         +  + 
Sbjct: 154 VELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNLY 205

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + +     ++   A  +   R+    Y GL++L  RY +   + + IE  Q  F+ +
Sbjct: 206 GAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNNPIESVQEMFLGI 265

Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+ E  ++      FYN+LS      +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 266 ALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGI 325

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G 
Sbjct: 326 YRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLGV 385

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W +
Sbjct: 386 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEENLNQDWYM 445

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+EV      +L D YG+E+E  Y +             R +    + R +L    ET
Sbjct: 446 FCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTTISR----RIMPIKEIVRLILRSAVET 501

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N S                       
Sbjct: 502 GTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEDDTVVVRTVK 561

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         D  ++   + + VR LDNVID+N + +  AK +N T+
Sbjct: 562 PGDFVVCNLASLSLGHLKLE---DETEMREVVSSVVRALDNVIDLNFYPLPFAKITNRTY 618

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A+++G+Y  F+G
Sbjct: 619 RSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFEG 678

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                  + +   W  L K+V   GMRN+  +AIAPT++ +
Sbjct: 679 SDWQTGEYFTK--------------RQYTSPEWQALAKKVSQQGMRNAYLLAIAPTSSTS 724

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   +  +DP  +  +++         V   L                           
Sbjct: 725 IIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL--------------------------- 757

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY  +  + ++L  +Y  A
Sbjct: 758 ----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTLA 813

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 814 WHCGVKTIYYIRSKSLEVEECES 836


>gi|257067185|ref|YP_003153441.1| ribonucleotide-diphosphate reductase subunit alpha [Anaerococcus
           prevotii DSM 20548]
 gi|256799065|gb|ACV29720.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 842

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/918 (29%), Positives = 440/918 (47%), Gaps = 116/918 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI +AI KAF +V+      S+  ++ ++ ++ +    + +   
Sbjct: 1   MEIIKRDGTRADFEREKIEKAIAKAFYSVD------SMISEEDLRKISSKIEKTIKEKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   V +E++QD VE +L+   +++  + ++LYR + +  R               L I+
Sbjct: 55  ADHTVTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVIGDFSKYIDDKNILNII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
               T +  +       +E      +              +   ++E D+  A+  ++  
Sbjct: 115 ----TEVQADFDNQRYPIESLFFKFE------------SFLKANMTEEDMLKAITRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL++++  E+  +  +        +++ L         EEG+   
Sbjct: 159 LTSKEAPDWEIIAARFLMQEINYEIEKSEERYELFDFKSKIEFL--------TEEGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAM 326
            + E+    ++  L   + + RD  F Y GL ++  RY + +  G  +E  Q  FM +AM
Sbjct: 211 YILENYTGEEIDELEAYMDFSRDKIFTYSGLDLVRKRYLITNHKGDILEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKDKIGFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 VTNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EF+ LR N GDDR + HD+     +PDLF +      NA W +F P
Sbjct: 391 AVAVYLDIWHKDIPEFMGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D YG+EFE  Y+         +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGRALEDTYGEEFEEFYKKLVAD----KDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV-------------------- 599
           ++  +D  N  +P +H G+++SSNLCTEI  N S  E+                      
Sbjct: 507 FVFNRDAVNRLNPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     NN     +L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVNNS---AELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I + + EA  E  D   E I+F+AI  S+E+A+E+GAYS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDISWQNEEAHGEFVDRVYEDINFYAIKESMEIAKEKGAYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +       W++L+  VK  G+RN   MAIAPT + + I
Sbjct: 684 WETGAY--------------FDLRDYKSERWEKLRAEVKENGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         +   +   L  +  W                   
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKG----AIVPRVAPGLTTKTFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQK IDQAQS+N+Y   E + ++L  IY  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQKHIDQAQSVNIYITTEYTMRQLLNIYITAWE 818

Query: 895 MGLKTTYYLRSRSATSVE 912
            G+K+ YY+R +S    E
Sbjct: 819 AGVKSIYYVRGKSQEVEE 836


>gi|317488667|ref|ZP_07947207.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
 gi|316912226|gb|EFV33795.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
          Length = 845

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 273/920 (29%), Positives = 427/920 (46%), Gaps = 117/920 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V       ++   D    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++       F  +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKE-FPGEE---------YELAHLSAKF-----QSFAKPDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +           +      EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETF--------AQKVAFLTEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +  + G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E  +E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A        R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARI----KKRAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N                       + 
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHIDMG---DPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D                 +   W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------------RGLTDGRWAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY  +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  G+KT YY+RS+S    E
Sbjct: 820 WEEGMKTIYYVRSKSLEVEE 839


>gi|288800287|ref|ZP_06405745.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332500|gb|EFC70980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 839

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/924 (30%), Positives = 445/924 (48%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG V  +D +KI+ AI K+F +V  +          +I  + +     +  H  
Sbjct: 1   MEIIKRNGNVEQYDKNKIAVAIQKSFASVGTEVNIV------LINEMVDAVERFIETH-- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA---PKL 145
            + + ++E IQDQVE +LMQ+G +   + Y+L+R +R++ R A ++  +DA      P L
Sbjct: 53  -SDMRNVESIQDQVEKTLMQNGFYDEAKSYILFRFQRTERRNAINNIVADAEDEDLKPIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +  D T + ++   L    +  C                      + ++D  +AL+ +
Sbjct: 112 RKISSDYTSVEYSLLLLSDKFKSFCKD-------------------DMKQADKLSALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +  +E PN+  + AR L  KL R +          + + +++ L         +E +
Sbjct: 153 AVEMTTQEAPNWEFIAARLLSYKLNRSIAAFEDSVGVHSFYDKLRYL--------TDERL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               +  S    ++   A  +K ER+    Y GL +L  RY +   N   IE  Q  ++ 
Sbjct: 205 YGDYILASYSPEEIAQAATFIKEERNDLLNYSGLDLLMKRYLIRTYNNKPIESIQEMYLG 264

Query: 324 VAMGLALKETEKEKRAV-EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E E     V +FY++LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAINEKEDRMLWVNKFYDILSKLEVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAQVSKFGGGMGMYFGKVRAAGGKIRGFKGAAGGVVRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQEDINQPWH 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +    A        R +S   + R +L    E
Sbjct: 445 LFCPNEILSIKGYCLEDYYGEEWEKRYIDCVSDA----RLTRRTLSVKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------------- 594
           TG P+   +D  N  +P  H G+++ SNLCTEI  N S                      
Sbjct: 501 TGTPFTFNRDHVNKANPNGHKGMIYCSNLCTEIAQNMSEIESVSTEVKTDDGDTVVVRAS 560

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S++L      N+    +L   +RT +R LDNVIDIN + +  A+ +N  
Sbjct: 561 KPGDFVVCNLASLSLGHLPLENE---SELTDVVRTVIRALDNVIDINFYPLPYAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R++GLG+ G+  AL +  I + S E ++  D+  E I+  A+ AS ++A+++G+Y  F+
Sbjct: 618 YRSLGLGVSGYHHALAVRGIKWESQEHLDFVDKVFETINRAAVEASSDIAKQKGSYKYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                    +   W  L  +VK  GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGEYFTK--------------RGYTSPEWTALAAKVKEQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  Q  +++         V      EL  R  W                
Sbjct: 724 SIIAGTTAGTDPVMQRFFLEEKKGAMLPRVAP----ELSDRTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
                      ++ +A+ ID  W + +A  RQ+ IDQAQS NLY+    S ++L  +Y  
Sbjct: 764 -----------VYKSAYNIDQQWTVRAAGVRQRHIDQAQSQNLYITNDFSMRQLLELYLL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWRSGVKTIYYVRSKSLEVEECES 836


>gi|288801823|ref|ZP_06407265.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
 gi|288335865|gb|EFC74298.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
          Length = 839

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/922 (29%), Positives = 441/922 (47%), Gaps = 121/922 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++     +       +I   ++E  V + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFISTGKDISDS-----EIAGMVSE--VEQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++          +   
Sbjct: 54  --ELRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY----------IVWT 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSSR 207
            DD  L       L  +   A    +   S + L E + +    G+S+ D   ALI ++ 
Sbjct: 102 ADDRELADV----LHSV---AREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +   K  + +++ +         EEG+  
Sbjct: 155 ELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRKVKYM--------TEEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             + ++  + ++   A  +  ER+    Y GL +L  RY +    G  IE  Q  F+ +A
Sbjct: 207 DYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYTGKVIERVQEMFLGIA 266

Query: 326 MGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LA+ E E         Y+LLS      +TPTL NS     QLSSCF+ TVPD L GI+
Sbjct: 267 LHLAMPEKEDRLTWVRRIYDLLSKLEVTMATPTLSNSRKSSHQLSSCFIDTVPDSLDGIY 326

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G R
Sbjct: 327 RSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLGMR 386

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W+LF
Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWSLF 446

Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P+E+       L D YG+E+E  Y +        +    R IS   + R +L    ETG
Sbjct: 447 CPNEIMRIKGYCLEDCYGEEWERKYLDCVND----QRLSRRVISIKDIVRLVLRSAVETG 502

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSS 594
            P+   +D  N  +P  H G+++ SNLCTEI  N                       +  
Sbjct: 503 TPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTTRP 562

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E  VCNL S++L         D +K+   + T VR LDNVI++N + +  A+ +N  +R
Sbjct: 563 GEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQRYR 619

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+Y  F+GS
Sbjct: 620 SIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSNLAKEKGSYQFFEGS 679

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W  G +                        W +++K V   GMRN+  +A+APT++ + 
Sbjct: 680 DWQTGAYFDK--------------RGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSSTSI 725

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G +  +DP  +  +++         V                                
Sbjct: 726 IAGTTAGLDPIMKRFFLEEKKGSMLPRVAP------------------------------ 755

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
             + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+    + +++  +Y  AW
Sbjct: 756 -ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLLAW 814

Query: 894 LMGLKTTYYLRSRSATSVEKST 915
             G+KT YY+RS+S    E  +
Sbjct: 815 KEGVKTIYYVRSKSLEVEECES 836


>gi|302344782|ref|YP_003813135.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302149042|gb|ADK95304.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 839

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 276/922 (29%), Positives = 442/922 (47%), Gaps = 121/922 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++         I   +I   ++E  V + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFISTGKD-----ISDNEIAGMVSE--VEQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++          +   
Sbjct: 54  --ELRTVEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINY----------IVWT 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSSR 207
            DD  L       L  +   A    +   S + L E + +    G+S+ D   ALI ++ 
Sbjct: 102 ADDRELADV----LHSV---AREYRERSYSMVTLQEKFSSFTKPGMSQKDSIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +   K  + +++ +         EEG+  
Sbjct: 155 ELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRKVKYM--------TEEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             + ++  + ++   A  +  ER+    Y GL +L  RY +   +G  IE  Q  F+ +A
Sbjct: 207 DYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLGIA 266

Query: 326 MGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LA+ E E         Y+LLS      +TPTL NS     QLSSCF+ TVPD L GI+
Sbjct: 267 LHLAMPEKEDRLMWVRRIYDLLSKLEVTMATPTLSNSRKPSHQLSSCFIDTVPDSLDGIY 326

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G R
Sbjct: 327 RSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLGMR 386

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W+LF
Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDMNQNWSLF 446

Query: 503 SPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P+E+       L D YG+E+E  Y +        +    R IS   + R +L    ETG
Sbjct: 447 CPNEIMRIKGYCLEDCYGEEWERKYLDCVND----QRLSRRVISIKDIVRLVLRSAVETG 502

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSS 594
            P+   +D  N  +P  H G+++ SNLCTEI  N                       +  
Sbjct: 503 TPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTTRP 562

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E  VCNL S++L         D +K+   + T VR LDNVI++N + +  A+ +N  +R
Sbjct: 563 GEFVVCNLASLSLGRLPLE---DEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQRYR 619

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG+ G+  AL    I + S E +E  D+  E I+  AI AS  LA+E+G+Y  F+GS
Sbjct: 620 SIGLGISGYHHALAKRRIKWESEEHLEFMDKVFETINRAAILASSNLAKEKGSYQFFEGS 679

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W  G +                        W +++K V   GMRN+  +A+APT++ + 
Sbjct: 680 DWQTGTYFDK--------------RGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSSTSI 725

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G +  +DP  +  +++         V                                
Sbjct: 726 IAGTTAGLDPIMKRFFLEEKKGSMLPRVAP------------------------------ 755

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
             + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+    + +++  +Y  AW
Sbjct: 756 -ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLLAW 814

Query: 894 LMGLKTTYYLRSRSATSVEKST 915
             G+KT YY+RS+S    E  +
Sbjct: 815 KEGVKTIYYVRSKSLEVEECES 836


>gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
 gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
          Length = 788

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 295/822 (35%), Positives = 431/822 (52%), Gaps = 111/822 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G     N ++++  +  A  GL+ ++   +  E +    DG+   D++  LI
Sbjct: 6   EVRVIKRNGRTEPLNVEKIQKYIISATEGLEGINKDELELEAH-FFKDGIKTQDIQQTLI 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+   PN++ V AR  L  L  +V   +  K               +   Y E 
Sbjct: 65  KTAIDHIDVHAPNWSFVAARLFLFDLYHKVSGFMGYK---------------HLAEYFEV 109

Query: 263 GV-KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
           G  + R++      FDL  L + L+ +RD  F YLG++ L+DRY L       IE+PQ  
Sbjct: 110 GEREGRIVRGFKEKFDLDRLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHM 169

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E++  ++A+ FY +LS F  MC+TPTL N+ T + QLSSC++ + PD++
Sbjct: 170 FMAIAMFLAQNESDPNEKALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNI 229

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + ++ A+L+KY GG+G D++ VR LG++I G    S G IPFLK+ ND A+AV+Q
Sbjct: 230 EGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQ 289

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH DV EF+DLRKN+GD+RRR HD+  A WI DLFM+RV ++  WT
Sbjct: 290 LGTRKGAIAVYLEIWHKDVLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P   SDL + YG  F   Y  YE      E  + ++I A  LW+K+LT  FE+G P+
Sbjct: 350 LFDPYVCSDLTECYGDVFTQKYLAYE----NNENIIKQRIEARTLWKKILTNYFESGLPF 405

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + FKD  N      H G++ SSNLCTEI   + S    V        L ++         
Sbjct: 406 LGFKDNANNAHLNGHTGLIRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTD 465

Query: 621 ---------------------------------------------------LASTIRTAV 629
                                                              +A  +  AV
Sbjct: 466 AHITKKANKLTSNDSLKGKRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAV 525

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDN+ID+N + I+KAK++N   RAIG G+MG   AL    I + S E     D  ME 
Sbjct: 526 RMLDNIIDLNFYPIDKAKRTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEK 585

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+  I  S +LAQERG+Y+ F+ S W +G+FP+D     A    E++ ++ +   W  L
Sbjct: 586 ISYTTILESCKLAQERGSYAHFENSEWSRGIFPMDKAKSQAW---EISPHKPT-CDWGGL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K +VK  G+RN   MAIAPT++I+ + G +Q+I+P YQ  + + N+SG   VV   L   
Sbjct: 642 KAQVKQHGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVVVPEL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W                            + +A++IDP  +I  A+ RQKWIDQ
Sbjct: 699 --SLETWH--------------------------YYTSAYDIDPKAIIRLAAVRQKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            QSLNL+   D+ SGK L  IY  AW +GLK+TYYLR+ S +
Sbjct: 731 GQSLNLFLRPDQASGKLLHEIYHLAWKLGLKSTYYLRTASPS 772


>gi|15639992|ref|NP_219445.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189026231|ref|YP_001934003.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093975|sp|O83972|RIR1_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3323332|gb|AAC65956.1| ribonucleoside-diphosphate reductase, subunit alpha (nrdA)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018806|gb|ACD71424.1| ribonucleoside-diphosphate reductase, subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|291060365|gb|ADD73100.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 845

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 273/915 (29%), Positives = 428/915 (46%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    +   KI  AI  AF +V+   A     V  II +L  +   +L + N+
Sbjct: 1   MHIIKRNGEPQPYMREKIIVAISAAFRSVQNPLAPE---VPAIITDLAAEVERQLFEMNR 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           + + VH+E IQD VE +L +  H    + ++LYR++R+  R A+         +  L ++
Sbjct: 58  AGVPVHVEKIQDFVEKTLTKYNHSDEVKSFILYRDDRTKKRIAREQIACCFTDSSVLGVL 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE--TALIFSS 206
            +      F               L  ++SK +L +            +      LI ++
Sbjct: 118 KEIQQDFPFPE-----------YSLDALASKFLLFKKEV-------TDERRSMQLLIKAA 159

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR L+      + T++ K    + + ++  L         E G+ 
Sbjct: 160 VELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLE--------EAGLY 211

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRV 324
              +       ++   A  L+  RD  F Y  L ++  RY +       +E PQ  F+ +
Sbjct: 212 GVYIRTHYSRAEIEEAATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQEMFLGI 271

Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+ ET ++ +    FY +LS      +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 ALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   + ++K+ GG+G  +  VR +GA I G  G + G++ ++K+ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVAVDQLGV 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V  N  A W L
Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D Y +E+E  Y +  + A   +    R I    L R +L  + ET
Sbjct: 452 MCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVLKSVVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+  ++D  N  +P  H G+++ SNLCTEI  N S                       
Sbjct: 508 GTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVVVQTTR 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L      +  D  +L   +R AVR LDNVID+  + +  A+ +N  +
Sbjct: 568 PGDFVVCNLASLVLSNI---DLSDDKELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG+ G+   L    I + S E +  AD   E I+  AI AS+ +A+E+GAY  F G
Sbjct: 625 RAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                        W  L++ V T GMRN   +A+APT++ +
Sbjct: 685 SDWCTGAYFRK--------------RGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++         V   L  +                        
Sbjct: 731 IIAGTTAGVDPIMKQYFLEEKKGMLMPRVAPSLSQKTC---------------------- 768

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                     ++ +A  ++  W I +A  RQ+ IDQAQS+NLY+    + K++  +Y  A
Sbjct: 769 ---------PLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W +G+K+ YY+RS+S
Sbjct: 820 WEVGMKSLYYVRSQS 834


>gi|313115921|ref|ZP_07801348.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621685|gb|EFQ05213.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 847

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 426/916 (46%), Gaps = 126/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    F   KI  A+ KAF   +G+G     R  D       + +  +L +  
Sbjct: 10  MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EILATVLNNLS 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKL 145
             + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS    VR   + +  D  +   L
Sbjct: 60  VTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVL 119

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +  D T   ++   L+M  E  C                     G++E +   AL  +
Sbjct: 120 RRIQMDFTEEVYSLAALQMKFESFCR-------------------LGMTEDERAEALTKA 160

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  + AR L    R        +  Q+     +  LY +      ++G+
Sbjct: 161 AVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK-LRYLTDKGL 212

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMR 323
               +       ++    + L  ERD  F Y GL +L  RY +       +E PQ  F+ 
Sbjct: 213 YGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRVPLETPQEMFLG 272

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+ TVPD L G
Sbjct: 273 IALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPDSLDG 332

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G
Sbjct: 333 IYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAVDQLG 392

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +N  A W 
Sbjct: 393 MRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENIDAPWH 452

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D +G E+E  Y +             R ++   + R +L    E
Sbjct: 453 LMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRI----EKRSVTVKDIVRLVLRSAVE 508

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 509 TGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIVVTAT 568

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D   +  T+ TA+R LDNVID+N + +E A+ +N  
Sbjct: 569 RPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPLEYARLTNQK 625

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+E+G Y+ F+
Sbjct: 626 YRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREKGRYALFE 685

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                    +   W  L K V   GMRN+  +A+APT++ 
Sbjct: 686 GSDWQTGAY--------------FEKRGYTSEKWRALAKTVAVQGMRNAYLLAVAPTSST 731

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G S  IDP  +  +++         V                              
Sbjct: 732 SILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP---------------------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
               +  D    +  A  ID  W + +A  RQ+ IDQAQS+NLY+    S +++  +Y +
Sbjct: 764 ---ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSMRQVLRLYLE 820

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS++
Sbjct: 821 AWRAGVKTIYYVRSKA 836


>gi|160942849|ref|ZP_02090089.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445901|gb|EDP22904.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
          Length = 847

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 426/916 (46%), Gaps = 126/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    F   KI  A+ KAF   +G+G     R  D       + +  +L +  
Sbjct: 10  MEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EILATVLNNLS 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKL 145
             + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS    VR   + +  D  +   L
Sbjct: 60  VTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVL 119

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +  D T   ++   L+M  E  C                     G++E +   AL  +
Sbjct: 120 RRIQMDFTEEVYSLAALQMKFESFCR-------------------LGMTEDERAEALTKA 160

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  + AR L    R        +  Q+     +  LY +      ++G+
Sbjct: 161 AVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK-LRYLTDKGL 212

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +       ++    + L  ERD  F Y GL +L  RY +       +E PQ  F+ 
Sbjct: 213 YGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRAPLETPQEMFLG 272

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+ TVPD L G
Sbjct: 273 IALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPDSLDG 332

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G
Sbjct: 333 IYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAVDQLG 392

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +N  A W 
Sbjct: 393 MRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENIDAPWH 452

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D +G E+E  Y +             R ++   + R +L    E
Sbjct: 453 LMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRI----EKRSVTVKDIVRLVLRSAVE 508

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 509 TGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIVVTAT 568

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D   +  T+ TA+R LDNVID+N + +E A+ +N  
Sbjct: 569 RPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPLEYARLTNQK 625

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+E+G Y+ F+
Sbjct: 626 YRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAREKGRYALFE 685

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                    +   W  L K V   GMRN+  +A+APT++ 
Sbjct: 686 GSDWQTGAY--------------FEKRGYTSEKWRALAKTVAVQGMRNAYLLAVAPTSST 731

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G S  IDP  +  +++         V                              
Sbjct: 732 SILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP---------------------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
               +  D    +  A  ID  W + +A  RQ+ IDQAQS+NLY+    S +++  +Y +
Sbjct: 764 ---ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSMRQVLRLYLE 820

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS++
Sbjct: 821 AWRAGVKTIYYVRSKA 836


>gi|282879358|ref|ZP_06288102.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
 gi|281298555|gb|EFA90980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
          Length = 839

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 268/924 (29%), Positives = 436/924 (47%), Gaps = 125/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++   K       +  +++++ +   T  ++ N 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFIST--KHEIDDATIYQMVQSVEDIVCTNHIKQN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +E IQD+VE +LM++G++   + ++L+R +R+++R           DA I   L
Sbjct: 58  ------VESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRIAEDLQDAHITEVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D T   +                   S  +++ +       G++ ++   ALI +
Sbjct: 112 KHIAADFTDKEY-------------------SILLLIDKYASFSKAGMTATERMDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P +  + AR L  +L + +      +   + + +M+ L         +  +
Sbjct: 153 AVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + +     ++   A  +   R+    Y GL++L  RY +   + S IE  Q  F+ 
Sbjct: 205 YGAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNSPIESVQEMFLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++      FYN+LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMNEPQDRMTWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W 
Sbjct: 385 VRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEENLNQDWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P+EV      +L D YG+E+E  Y +             R +    + R +L    E
Sbjct: 445 MFCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTSISR----RIMPIKEIVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------------------- 593
           TG P+   +D  N  +P  H G+++ SNLCTEI  N S                      
Sbjct: 501 TGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEGDTVVVRTV 560

Query: 594 -SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S++L         D  ++   + + VR LDNVID+N + +  AK +N T
Sbjct: 561 KPGDFVVCNLASLSLGHLKLE---DETEMKEVVSSVVRALDNVIDLNFYPLPFAKITNRT 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A+++G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                  + +   W  L K+V   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGEYFTK--------------RQYTSPQWKALAKKVSQQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   +  +DP  +  +++         V   L                          
Sbjct: 724 SIIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                 D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY  +  + ++L  +Y  
Sbjct: 758 -----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTL 812

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 813 AWHCGVKTIYYIRSKSLEVEECES 836


>gi|229495846|ref|ZP_04389572.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317159|gb|EEN83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 834

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/910 (30%), Positives = 429/910 (47%), Gaps = 122/910 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRN  V SF   KI  A+ +AF A E +           +  L E  +T +     
Sbjct: 1   MKIIKRNKQVESFSVEKIKNALRRAFRATETRVTPAE------LNALCESILTEI----G 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   V +E +QD VE  LM SG++K+ + Y+LYR + S+ R           +  + +  
Sbjct: 51  SPEAVEVEMVQDIVETRLMASGYYKVAKAYILYRTKHSEAR----------EVINRFRHY 100

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D  +IS   K L+     A   L       +L   +   Y     ++    L  ++  
Sbjct: 101 IADEEVISL-LKELQEQYTGAAYALD------LLYAKFYAFYKE--GAEPLQMLTKAAVE 151

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI  E P +  + ARFL  +LR+       +K ++  H  +   Y +      EEG+  R
Sbjct: 152 LITPEAPKWEFIAARFLGLELRK-----GLEKVEEKYH--LSGFYAK-IKFLTEEGLYGR 203

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326
            + E     ++  LA  +   R     Y  L ++  RY +H +   I E PQ  FM +AM
Sbjct: 204 YILEHYTKEEIDELAKVIDNSRSNLLTYSSLHLIAKRYLIHSSDHIILESPQEMFMGIAM 263

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E  + + A + Y++LS      +TPT+ N+     QLSSCF+  +PD+L GI+  
Sbjct: 264 HLAMPERHRVQWATKIYDILSQLKVTMATPTMSNARKPLSQLSSCFIDVMPDNLIGIYRT 323

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++KY GG+G     VR +G+ I G  G + GV+ ++K+ANDTA+AV+Q G R+G
Sbjct: 324 IDNFAQVSKYGGGMGIYLGKVRAVGSDIRGFKGVAGGVLKWVKLANDTAIAVDQLGVRQG 383

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL +R N GDDR + HD+     IPDLF +++ ++    W +  P
Sbjct: 384 SVALYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGVCIPDLFWQQLEEDPNSTWYMLCP 443

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D +G E+   Y    + +        R I+   + R ++    ETG P
Sbjct: 444 HEVLSVKGYALEDYWGDEWTRRYRECLQDS----RLAKRPIAIKDMLRLIIKSAVETGTP 499

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +I  +D  N  +P  H G+V+ SNLC+EI  + S                         +
Sbjct: 500 FIFNRDTVNRMNPNGHCGIVYCSNLCSEIAQSQSEIRLKQQTVVLEEGEEVVIEKTIAGD 559

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      +     +L  T+ T VR LDNVID+N + I  A+ +N   R I
Sbjct: 560 FVVCNLASLVLGNIDTESA---TELRDTVHTIVRALDNVIDLNFYPIPYAEITNLKMRPI 616

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+++AI AS  LA E+G Y+ F GS W
Sbjct: 617 GLGSSGYHHLLAKRGIAWESQEHLSFMDKLYEQINYYAIEASSLLAAEKGQYARFAGSDW 676

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G +               A    +   W +L  +V  +GMRN+  MAIAPT++ + I 
Sbjct: 677 QTGQY--------------FAKRNYTSERWQKLAAQVAELGMRNAYLMAIAPTSSTSIIA 722

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  IDP     +++         +   +  +L     W                    
Sbjct: 723 GTTAGIDPIMNRFFLEEKKG----SIVPRVAPDLSDETFW-------------------- 758

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
                  ++ TA +ID  W++++A  RQ+ +DQ+QS+NLY+ +  +   +  +Y +AW  
Sbjct: 759 -------LYKTAHQIDQKWVVDAAGIRQRHLDQSQSVNLYITQDITFGGIRDLYLRAWHE 811

Query: 896 GLKTTYYLRS 905
           G+KT YY+RS
Sbjct: 812 GVKTLYYIRS 821


>gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 778

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 254/804 (31%), Positives = 419/804 (52%), Gaps = 45/804 (5%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
            + +   V+E    ++ ++  +   +    +   ++ +++       + T+I   P+Y K
Sbjct: 9   IEIITTYVDEF--KIEGLNLPLFFDKVSSGLALDMTPTEMTKYCSEIAATMITIHPSYNK 66

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           + A  L++ L      T   K           +Y +      ++ +   +++   +    
Sbjct: 67  LAAIILIKHLHENTFNTFSDK----------MMYIQQEKNIFDDHIMELIINNMNV---- 112

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
               + +KYERD+ F+Y  L  L   Y + +N + IE PQ  +MRVA+ L   +      
Sbjct: 113 --YNSIVKYERDYNFDYFALISLQKSYQIQVNNTVIERPQDIYMRVAIELHGDDFNN--- 167

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
             + Y+LLS  ++  +TPTL+NS  +  QL+SCFL  +  D + GIF  ++E A+ +K S
Sbjct: 168 VQKTYDLLSQQYYTHATPTLYNSCFKKNQLASCFLLGMKSDTIAGIFDTIKEAAIYSKLS 227

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA-YLETWH 456
           GG+G   + +R   + +  T G S+G+IP +K+ ND+   +NQGG R+ A CA YLE WH
Sbjct: 228 GGVGLHISNLRCDKSQLVTTGGYSKGIIPIVKLINDSMKYINQGGARRCATCAFYLEPWH 287

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +FLDLRKNTG +  R  D  TA WI DLFM+RV +N  W+LF P+    L D++G 
Sbjct: 288 KDILKFLDLRKNTGIEEERARDSFTALWINDLFMERVEKNEMWSLFDPNIAKGLQDVWGD 347

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +F   Y  YE   +R        I A  LW++++    ETG P++ +KD CN  S Q ++
Sbjct: 348 QFNKLYAYYEETIER------TTIPAQKLWKEIICSQIETGTPYMCYKDTCNRYSNQNNI 401

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVR 630
           G + SSNLC EI   S S+ TAVCNL SI L  +        N  FD+ +L + ++    
Sbjct: 402 GTIKSSNLCAEIIQYSDSDITAVCNLASICLPKYVKINSTTSNYYFDFQELYTVVKIVTY 461

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            ++ +ID +    E++KK N   R IG+G+ G      L+   + S EA ++     E +
Sbjct: 462 NMNKMIDKSAFPTEESKKGNSLFRPIGIGVQGLADVFFLMGYSFESKEARDLNKMIFETL 521

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            F A+ AS ELAQ+ G YS ++GS++ QG+F  +      E R  +    +    W+EL+
Sbjct: 522 YFGALEASCELAQKHGPYSYYQGSMYSQGIFHFE---KFCEGRINVNEILSGMWNWEELR 578

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++KT G+RNS  +A+ PTA+ + ICG S+ I+P   N++ +   +G+F +VN +L+ +L
Sbjct: 579 IKMKTYGVRNSLTLALMPTASTSQICGNSECIEPIQSNIFTRRTFAGEFQIVNKYLMKDL 638

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW+  +   +  ++GSI  I  IP  +K ++ T +E+    +++ A  RQ ++DQ+
Sbjct: 639 IKLGLWNNEIKQLIIEYEGSIQKIPIIPQHVKDLYKTVWELKMKSVLDMAIDRQAFVDQS 698

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLNL++ EP+   L  ++   W   LKT  YYLR+       K T+         + + 
Sbjct: 699 QSLNLFVKEPTYGILSSMHFYGWKNKLKTGMYYLRTCPLAKAIKFTVD------KELILK 752

Query: 930 DPNSSTHSLGIPSSCTSDTECEVC 953
             +S   S         +  CE C
Sbjct: 753 TLSSFKDSENDKKLNKENDYCEGC 776


>gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           mustelae 12198]
 gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           mustelae 12198]
          Length = 789

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 293/832 (35%), Positives = 435/832 (52%), Gaps = 105/832 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G +   +  ++      A   L+DVS   +  ++     D ++  +++  LI 
Sbjct: 2   ITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V      +  +           EYF +  +EG
Sbjct: 62  TAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTGYRSLR-----------EYFEKGEQEG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              +++      FDL +L   +K ERD  F +LG++ LYDRY L       IE+PQ  FM
Sbjct: 111 ---KIVKGLKEKFDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMFM 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E +    A++FY+++S F  + +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 168 AIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIEG 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A +E A+L+KY GG+G D++ VRGLG+ I G    + GV+PFLK+ ND A+AV+Q G
Sbjct: 228 IFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQLG 287

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  YLE WH DV+EF+DLRKN+G++RRRTHD+  A WI DLFMKRV +N  WTLF
Sbjct: 288 TRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTLF 347

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +   L +LYG+EFE  Y  +E+     +  +   I A  LW+K+LT  FETG P++ 
Sbjct: 348 DPYQCGILTELYGEEFEEKYLEFEK----RQDIIKEHIHAKELWKKILTNYFETGMPFLC 403

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------------------- 599
           FKD  N  +P  H G++ SSNLCTEI  N+S+    +                       
Sbjct: 404 FKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDAG 463

Query: 600 ------------C----------------NLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                       C                N    NL +   +     + +   +  A+R+
Sbjct: 464 IEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSRIHTKEDIDRIVPIAIRM 523

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVI++N +   K K +N  +RAIGLG+MG    L    I + S E  E  D  ME IS
Sbjct: 524 LDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDMIMEAIS 583

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++AI AS  LA E+G Y  F+GS W +G+FPID     A    +          W+ L++
Sbjct: 584 YNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYNWNFLRE 643

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L     
Sbjct: 644 KVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPNL----- 698

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                N+E  P      +  A+++D   +I++A+ RQKW+DQ Q
Sbjct: 699 ---------------------NLETFP-----YYTRAYDLDQKQIIKAAAIRQKWMDQGQ 732

Query: 872 SLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           S N ++      S K L  IY  AW +GLK+TYYLRS S  + E+   + ++
Sbjct: 733 STNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSESPEAREEIADRSME 784


>gi|160947323|ref|ZP_02094490.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
 gi|158446457|gb|EDP23452.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
          Length = 854

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/925 (29%), Positives = 433/925 (46%), Gaps = 122/925 (13%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            Y F E I  +++IKR+    SFD SKI  AI KAF++V  +          + K L E+
Sbjct: 5   GYKFAEVIL-LRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKL------LSKRLAEE 57

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR---AAQSHS 135
               +LQ       + +E+IQD VE +L ++ H++  + Y+LYRE+R+ +R    +    
Sbjct: 58  VFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREY 117

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
             D  +   L  +  D +   +   RL          L  V     L+E           
Sbjct: 118 IEDESLIEVLAKIQKDFSTEGYELDRLCRKF------LSFVKPNSTLNEKI--------- 162

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
                 LI +S  L  KE PN+  ++AR    K+  E++    +        ++Q L   
Sbjct: 163 ----ELLIKASSELTSKENPNWEYISARIYAYKIHNEIVNYEKEWHIVDFKSKIQVL--- 215

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSR 313
                 +  +    + E+    D+  L   +   RD  F Y  L ++Y RY +   +   
Sbjct: 216 -----TKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLICDSHKKV 270

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           IE  Q  FM +AM LA+ E ++   A + Y++LS+     +TPT+ N+     QLSSCF+
Sbjct: 271 IETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQLSSCFI 330

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+AND
Sbjct: 331 DTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWIKLAND 390

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+G+   YL+ WH D+ EFL+LR N GDDR + HD+  A   P+LF +  
Sbjct: 391 TAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPNLFWRLA 450

Query: 494 TQ--NAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +  N+ W LF P EV +     L D YG+E+E  Y    ++    +    R ++   L 
Sbjct: 451 KENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDK----RILTVKDLV 506

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------ 594
           + +L    ETG P+I  +D  N  +P  H G+++SSNLCTEI  N               
Sbjct: 507 KLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDVEDKILQID 566

Query: 595 -----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL S+ L      N    +++   + T +R LDNVID+N +  
Sbjct: 567 GEDHVVTDVKAGDFVVCNLASLVLGNIDLKND---EEMEFVVSTMIRALDNVIDLNYYPT 623

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             AK +N  +RAIGLG  G+  AL    I + + E +E  D+  E I++ AI  S ++ +
Sbjct: 624 PFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAIKESSKIGE 683

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G+Y  F+GS W  G +                    +   W ELK++V   G+RN+  
Sbjct: 684 EKGSYKYFEGSEWQNGKY--------------FEKRDYNSKEWIELKEKVSKNGLRNAYL 729

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT + + I G +  +DP     +++         V   L  E      W       
Sbjct: 730 LAVAPTGSTSIIAGTTAGVDPVMMRYFLEEKKGSIIPRVAPDLTPE----TFW------- 778

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-G 882
                               ++  A E+D  W I++   RQ+ IDQ QSLNLY+      
Sbjct: 779 --------------------LYENAHEVDQTWSIKAGGVRQRHIDQGQSLNLYITTDYKM 818

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
            ++  +   +  +GLK+ YY+RS+S
Sbjct: 819 SQILKLLILSCEVGLKSIYYIRSKS 843


>gi|288928560|ref|ZP_06422407.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331394|gb|EFC69978.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 839

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/925 (29%), Positives = 434/925 (46%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG +  FD  KI+ AI K+F++           V+D I ++       ++ H  
Sbjct: 1   MDITKRNGSMAPFDREKIATAIKKSFISTGRPI------VEDEIHDVAIAVEQVIITH-- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR---AAQSHSKSDAPIAPKL 145
               +++E IQD+VE SLMQ G +   + Y+L+R +R++ R      +++   A IAP L
Sbjct: 53  -PAKLNVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNRIANTLQQAEIAPVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D                       ++     L+E +       ++  D  +ALI 
Sbjct: 112 KGIAADFE--------------------PELYPIAALAEKFMGFVKADMNGRDKLSALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L   E PN+  + AR L  +L+R++        +     E    + +       + 
Sbjct: 152 AAVELTSAEAPNWEFIAARLLSYRLQRDL--------ETFEQAEDIQSFAQKVRHLASQN 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           +    + ++  + +L   A+ +  ER+    Y GL +L  RY +       +E  Q  F+
Sbjct: 204 LYGAYIVDAYTENELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFL 263

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E E       +FY++LS      +TPTL N+     QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMNEGENRLHWVKKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   Q  N  W
Sbjct: 384 GVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQQDLNQDW 443

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +F P+EV       L D YG+ +E  Y          +    R ++   + R +L    
Sbjct: 444 HMFCPNEVLTTRGYSLEDFYGEAWEEKYHECVAD----KRLSRRTMTIKDVIRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------------------- 592
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 500 ETGTPFTFNRDIVNRANPNGHNGIIYCSNLCTEIAQNMKAIEEVSNEVLTKDGDTVVVRT 559

Query: 593 -SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL S++L      N+     L   + T VR LDNVID+N + +  A+ +NH
Sbjct: 560 VKPGDFVVCNLASLSLGNLPLENE---TYLNDIVATVVRALDNVIDLNFYPVPYAQITNH 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL L  I + S E ++  D+  E I+  AI AS  LA+E+GAY+ F
Sbjct: 617 RYRSIGLGVSGYHHALALRGIKWESEEHLQFVDQVFERINRAAIEASSSLAKEKGAYAYF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                    +   W +  +RVK  GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAYFDK--------------RNYNSPQWQQTAQRVKAQGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + +   +  +DP  Q  +++         V       L  R  W               
Sbjct: 723 TSIVAATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A++ +  W + ++  RQ+ IDQAQS+NLY  +  + ++L  +Y 
Sbjct: 764 ------------LYKGAYQTNQAWSMRASGIRQRHIDQAQSVNLYITNNYTMRQLLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWQSGVKTIYYVRSKSLEVEECES 836


>gi|325859752|ref|ZP_08172882.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482678|gb|EGC85681.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 840

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/923 (29%), Positives = 446/923 (48%), Gaps = 122/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   +++ +KIS AI K+F++             + I  +  +    +     
Sbjct: 1   MEITKRNGEKEAYNNNKISTAIKKSFISTGKNVPD------NEIAGMVSKVEQFIT---D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++          +   
Sbjct: 52  NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
           +DD  L       L  +   A    +   S + L E + +    G+S  D   ALI ++ 
Sbjct: 102 VDDRQLADV----LHRV---AHEYRERAYSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +   K  + +++ +         EEG+  
Sbjct: 155 ELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRKVKYM--------TEEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             + ++  + ++   A+ ++ ER+    Y GL +L  RY +   +G  IE  Q  F+ +A
Sbjct: 207 DYILQNYSEEEINEAASFIRPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLGIA 266

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA+ E ++ +       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 267 LHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDGI 326

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G 
Sbjct: 327 YRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGM 386

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  WTL
Sbjct: 387 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWTL 446

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+E+       L D YG+E+E  Y +        +    R IS   + R +L    ET
Sbjct: 447 FCPNEIMRIKGYCLEDCYGEEWERRYLDC----INDQRLSRRVISIKDIVRLVLRSAVET 502

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 503 GTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTKTR 562

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N  +
Sbjct: 563 PGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYARITNQRY 619

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E+G+Y  F+G
Sbjct: 620 RSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFEIINRAAILASSDLAKEKGSYQFFEG 679

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                        W ++++ V   GMRN+  +A+APT++ +
Sbjct: 680 SDWQTGAYFDK--------------RGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSSTS 725

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++         V                               
Sbjct: 726 IIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP----------------------------- 756

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
              + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+    + +++  +Y  A
Sbjct: 757 --ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYLLA 814

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 815 WKNGVKTLYYVRSKSLEVEECES 837


>gi|161613002|ref|YP_001586967.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362366|gb|ABX66134.1| hypothetical protein SPAB_00708 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 780

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 207/818 (25%), Positives = 341/818 (41%), Gaps = 79/818 (9%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++          
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----- 116

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E   LY  +  + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 117 -----EPPALY-HHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +Y +   + G   E  Q  ++ VA  L      + +      FY+ +S+F     TP 
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPI 230

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 231 MSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGG 290

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  R  
Sbjct: 291 EAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVR 350

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE      + 
Sbjct: 351 HMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK- 409

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT---- 589
              +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI     
Sbjct: 410 ---QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTK 466

Query: 590 ----LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  
Sbjct: 467 PLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPA 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+
Sbjct: 522 AKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQ 581

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   F  + + +G+ PID+         +  +N      W +L++ +KT G+RNS   A
Sbjct: 582 GACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSA 637

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + +K++  G    V         +       ++ ++ 
Sbjct: 638 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMP 692

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG 882
            +DG +                                QK+IDQ+ S N   D    PSG
Sbjct: 693 NNDGYLQ--------------------------LVGIMQKFIDQSISANTNYDPSRFPSG 726

Query: 883 K----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K    +L      A+  G+KT YY  +R      +  L
Sbjct: 727 KVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 764


>gi|327312836|ref|YP_004328273.1| ribonucleoside-diphosphate reductase subunit alpha [Prevotella
           denticola F0289]
 gi|326945781|gb|AEA21666.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola F0289]
          Length = 840

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 269/923 (29%), Positives = 446/923 (48%), Gaps = 122/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   ++D +KIS AI K+F++             + I  +  +    +     
Sbjct: 1   MEITKRNGEKEAYDNNKISTAIKKSFISTGKNVPD------NEIAGMVSKVEQFIT---D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++          +   
Sbjct: 52  NPELRTVEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINY----------IAWA 101

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
           +DD  L       L  +   A    +   S + L E + +    G+S  D   ALI ++ 
Sbjct: 102 VDDRQLADV----LHRV---AHEYRERAYSMVTLQEKFASFSKPGMSHRDAIDALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +   K  + +++ +         EEG+  
Sbjct: 155 ELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRKVKYM--------TEEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             + ++  + ++   A+ ++ ER+    Y GL +L  RY +   +G  IE  Q  F+ +A
Sbjct: 207 DYILQNYSEEEINEAASFIRPERNELLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLGIA 266

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA+ E ++ +       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 267 LHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDGI 326

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G 
Sbjct: 327 YRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGM 386

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  WTL
Sbjct: 387 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWTL 446

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+E+       L D YG+E+E  Y +        +    R IS   +   +L    ET
Sbjct: 447 FCPNEIMRIKGYCLEDCYGEEWERRYLDC----INDQRLSRRVISIKDIVHLVLRSAVET 502

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 503 GTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTKTR 562

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N  +
Sbjct: 563 PGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYARITNQRY 619

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL   HI + S E ++  D+  E I+  AI AS +LA+E+G+Y  F+G
Sbjct: 620 RSIGLGVSGYHHALAKRHIKWESEEHLQFMDKVFETINRAAILASSDLAKEKGSYQFFEG 679

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                        W ++++ V   GMRN+  +A+APT++ +
Sbjct: 680 SDWQTGAYFDK--------------RGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSSTS 725

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++         V                               
Sbjct: 726 IIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP----------------------------- 756

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
              + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+    + +++  +Y  A
Sbjct: 757 --ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYLLA 814

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 815 WKNGVKTLYYVRSKSLEVEECES 837


>gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 769

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 242/790 (30%), Positives = 410/790 (51%), Gaps = 39/790 (4%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
            R++  VEE    +  +  K    +    +   ++  ++       + ++I   PNY K+
Sbjct: 14  SRIKAFVEEF--NITSIDLKNYFKQVSSGLAMEMTCEEMSKYCSEVAASMITLHPNYNKL 71

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            +  L++ L         ++     H E+  ++ E   + ++   K              
Sbjct: 72  ASVILIKYLHCSTHENFSER-FLLLHSELN-IFDEDIVQLVKLHRK-------------- 115

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           Y  + +    D+ F+Y GL  L+  Y   IN S +E PQ  +M+VA+ L     +  K  
Sbjct: 116 YYDDIIDSTNDYLFDYFGLITLFKTYLNKINNSIVERPQDIYMKVAIQLHRSNFDDVKT- 174

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSG 398
              Y LLS+F++   TPTL+NS  + PQ++SCFL  +  D + GIF  +++ A + K++G
Sbjct: 175 --TYELLSNFYYTHGTPTLYNSCLKKPQMASCFLLAMKDDSVEGIFETIKDCASIRKFNG 232

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457
           G+G   T +R   + I+ T G+++G+IP +++ ++T    N+   KR  +   YLE WH 
Sbjct: 233 GIGMYLTNIRPNKSKINSTGGEAKGIIPVIRLISETIKYFNKNETKRSTSCAFYLEPWHP 292

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FL+LRKNTG +  R  D     +I D+FM+RV  N  W+LF P   + L + +G E
Sbjct: 293 DIFDFLNLRKNTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFDPSIATGLINAWGDE 352

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           F   YE YE+            I A  LW++++    ETG P++ +KD CN  S Q ++G
Sbjct: 353 FNKLYEYYEK------TIPKITIPAQKLWKEIICAQIETGTPYLVYKDSCNRNSNQNNLG 406

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVI 636
            + SSNLC EI   S +  T VCNL SI L     N NQFD+ +L   ++     L+ +I
Sbjct: 407 TIKSSNLCAEIIEYSDANITGVCNLASICLPKFINNANQFDFKQLYQVMKKVTINLNKLI 466

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           DI+ +  ++AK SN   R IG+G+ G   AL  + IP+ S +A E+     E + +  + 
Sbjct: 467 DISFYPTKEAKYSNEATRPIGIGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVME 526

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S+ELA+  G Y     S++ +G+F  +       ++++     +    W++L+++++  
Sbjct: 527 TSMELAKTYGPYPLITNSMYSKGIFHFEKY-----LKNKNIDILSGLWDWEDLREKIRLY 581

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  ++I PTAT A ICG S+ ++P   N+Y +    G+F +VN +L+N+L +  LW
Sbjct: 582 GVRNSLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQIVNKYLMNDLIKLGLW 641

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              M   +  ++GSI NI  IP ++K ++ T +EI    +++ A  RQ ++DQ+QSLNL+
Sbjct: 642 SNEMKQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMAHERQAFVDQSQSLNLF 701

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           + +P+   L  ++   W +GLKT  YYLR+    S  K T+   D +L    ++   +  
Sbjct: 702 ISQPTYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTI---DKELIIRTLSSMKNDE 758

Query: 936 HSLGIPSSCT 945
                   C+
Sbjct: 759 CEPPNCKECS 768


>gi|224583239|ref|YP_002637037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467766|gb|ACN45596.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|326624096|gb|EGE30441.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 780

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 207/818 (25%), Positives = 342/818 (41%), Gaps = 79/818 (9%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++          
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----- 116

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E   LY  +  + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 117 -----EPPALY-HHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +Y +   + G   E  Q  ++ VA  L      + +      FY+ +S+F     TP 
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPI 230

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 231 MSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGG 290

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  R  
Sbjct: 291 EAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVR 350

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE      + 
Sbjct: 351 HMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK- 409

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT---- 589
              +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI     
Sbjct: 410 ---QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTK 466

Query: 590 ----LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  
Sbjct: 467 PLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPA 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+
Sbjct: 522 AKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQ 581

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   F  + + +G+ PID+         +  +N      W++L++ +KT G+RNS   A
Sbjct: 582 GACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSA 637

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + +K++  G    V         +       ++ ++ 
Sbjct: 638 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMP 692

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG 882
            +DG +                                QK+IDQ+ S N   D    PSG
Sbjct: 693 NNDGYLQ--------------------------LVGIMQKFIDQSISANTNYDPSRFPSG 726

Query: 883 K----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K    +L      A+  G+KT YY  +R      +  L
Sbjct: 727 KVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 764


>gi|325268391|ref|ZP_08135023.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
 gi|324989245|gb|EGC21196.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
          Length = 840

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/924 (28%), Positives = 449/924 (48%), Gaps = 124/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +++ +KIS AI K+F++   + A       + I  +  +    +     
Sbjct: 1   MEIIKRNGEKEAYNNNKISIAIKKSFISTGKEIAD------NEIAGMVGEVEQFIT---D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +EDIQ++VE  LM+ GH+   + Y+L+R +R++ R A ++    A         
Sbjct: 52  NPGLRTVEDIQNRVEKCLMEHGHYDEAKNYILFRYQRNEQRQAINYIAWAA--------- 102

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV-LSETYKNMY-DGLSESDLETALIFSS 206
                    + ++L  ++       ++ S  +V L E + +    G+S  D   ALI ++
Sbjct: 103 ---------DDRQLADVLHRVAREYRERSYSMVTLQEKFASFSKPGMSHRDAIDALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L   E P +  ++AR L  +  +++     +   K  + +++ +         EEG+ 
Sbjct: 154 VELTTPEAPAWEMISARILSYRSEQKISRLEEELGLKTFYQKVRYM--------TEEGLY 205

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRV 324
              + ++  + ++   A+ ++ +R+    + GL +L  RY +    G  +E  Q  F+ +
Sbjct: 206 GDYILQNYGEEEINEAADFMQPDRNELLNFSGLDLLLKRYVIKSYAGKVLERVQEMFLGI 265

Query: 325 AMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           A+ LAL E ++++       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 266 ALHLALPEKKEDRLLWVRRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDG 325

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 326 IYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 385

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  WT
Sbjct: 386 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWT 445

Query: 501 LFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L    E
Sbjct: 446 LFCPNEIMRIKGYCLEDCYGEEWERRYLDCVND----QRISRRVISIKDIVRLVLRSAVE 501

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 502 TGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTKT 561

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N  
Sbjct: 562 RPGEFVVCNLASLSLGRLPLE---DEEQMKEKVATVVRALDNVISLNFYPVPYARITNQR 618

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E+G+Y  F+
Sbjct: 619 YRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSDLAREKGSYQFFE 678

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +                        W E+++ V   GMRN+  +A+APT++ 
Sbjct: 679 GSEWQTGAYFDK--------------RGYGSAEWQEVRRTVARQGMRNAYLLAVAPTSST 724

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP  +  +++         V                              
Sbjct: 725 SIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP---------------------------- 756

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
               + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+    + +++  +Y  
Sbjct: 757 ---ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYLL 813

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 814 AWKSGVKTLYYVRSKSLEVEECES 837


>gi|194736487|ref|YP_002115348.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194711989|gb|ACF91210.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
          Length = 780

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 207/818 (25%), Positives = 342/818 (41%), Gaps = 79/818 (9%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++          
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----- 116

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E   LY  +  + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 117 -----EPPALY-HHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +Y +   + G   E  Q  ++ VA  L      + +      FY+ +S+F     TP 
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPI 230

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 231 MSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGG 290

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  R  
Sbjct: 291 EAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVR 350

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE      + 
Sbjct: 351 HMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK- 409

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT---- 589
              +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI     
Sbjct: 410 ---QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTK 466

Query: 590 ----LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  
Sbjct: 467 PLHDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPA 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+
Sbjct: 522 AKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQ 581

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   F  + + +G+ PID+         +  +N      W++L++ +KT G+RNS   A
Sbjct: 582 GACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSA 637

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + +K++  G    V         +       ++ ++ 
Sbjct: 638 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMP 692

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG 882
            +DG +                                QK+IDQ+ S N   D    PSG
Sbjct: 693 NNDGYLQ--------------------------LVGIMQKFIDQSISANTNYDPSRFPSG 726

Query: 883 K----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K    +L      A+  G+KT YY  +R      +  L
Sbjct: 727 KVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 764


>gi|260912587|ref|ZP_05919118.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633299|gb|EEX51458.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 839

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/925 (30%), Positives = 430/925 (46%), Gaps = 127/925 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG +  FD  KI+ AI K+F++         IR  D+   + +  +T   + N 
Sbjct: 1   MDITKRNGSMAPFDREKIATAIKKSFISTGRTIVEDEIR--DVAIAVEQVIITNPAKQN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +E IQD+VE SLMQ G +   + Y+L+R +R++ R   +          IAP L
Sbjct: 58  ------VECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNKIANTLQQPEIAPAL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIF 204
           K +  D                       ++     L+E +       ++  D  +ALI 
Sbjct: 112 KGIAADFE--------------------PELYPIAALAEKFMGFVKADMNGRDKLSALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L   E PN+  + AR L  +L+R++        +     E    + +       + 
Sbjct: 152 AAVELTSAEAPNWEFIAARLLSYRLQRDL--------EAFEQAEDIQSFAQKVRHLASQN 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           +    + E+  D +L   A+ +  ER+    Y GL +L  RY +       +E  Q  F+
Sbjct: 204 LYGTYIAEAYTDGELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFL 263

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E E       +FY++LS      +TPTL N+     QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMNEGENRLHWVRKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V Q  N  W
Sbjct: 384 GVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMVQQDLNQEW 443

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +F P+EV       L D YG E+E  Y          +    R ++   + R +L    
Sbjct: 444 HMFCPNEVLTTRGYSLEDFYGSEWEEKYRECVAD----KRLSRRTMTLKDVIRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------------------- 592
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 500 ETGTPFTFNRDIVNRANPNAHNGIIYCSNLCTEIAQNMQPIEEVSNEVVTKDGDTVVVRT 559

Query: 593 -SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL S++L      N+     L   + T VR LDNVID+N + +  A+ +NH
Sbjct: 560 VKPGDFVVCNLASLSLGNLPLENE---AYLNDVVATVVRALDNVIDLNFYPVPYAQITNH 616

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL L  I + S + ++  D+  E I+  AI AS  LA+E+G+Y+ F
Sbjct: 617 RYRSIGLGVSGYHHALALRGINWESEDHLQFVDQVFERINRAAIEASSALAKEKGSYACF 676

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                        W +  +RVK  GMRN+  +AIAPT++
Sbjct: 677 EGSDWQTGAY--------------FEKRNYDSPQWQQTAQRVKVQGMRNAYLLAIAPTSS 722

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + +   +  +DP  Q  +++         V       L  R  W               
Sbjct: 723 TSIVAATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW--------------- 763

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A++ +  W + +A  RQ+ IDQAQS+NLY  +  + ++L  +Y 
Sbjct: 764 ------------LYKGAYQTNQAWSMRAAGIRQRHIDQAQSVNLYITNNYTMRQLLDLYL 811

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  G+KT YY+RS+S    E  +
Sbjct: 812 LAWQSGVKTIYYVRSKSLEVEECES 836


>gi|237733861|ref|ZP_04564342.1| ribonucleotide-diphosphate reductase subunit alpha [Mollicutes
           bacterium D7]
 gi|229382942|gb|EEO33033.1| ribonucleotide-diphosphate reductase subunit alpha [Coprobacillus
           sp. D7]
          Length = 838

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/923 (28%), Positives = 444/923 (48%), Gaps = 121/923 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K + + KRNG    +D +KI  AI KAF ++        ++   +I ++ +  +  +  
Sbjct: 1   MKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDDELK--KMIADIEKHIIADM-- 56

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R       +        
Sbjct: 57  --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 108

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+++           ++           ++ S +++L +      +G+S  +    L+ +
Sbjct: 109 KVLL-----------KIHK-----DYPQEEYSLQLLLVKFKTFYKEGMSHFEALKMLMKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  LI KE P +  ++ARFL   + ++V   +    +   +  +  L         ++G 
Sbjct: 153 SVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYLA--------QQGY 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323
             + + ES    ++  L   +   R+  F Y GL+++  RY +  +    IE PQ  FM 
Sbjct: 205 YGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFMS 264

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D L GI
Sbjct: 265 IAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGI 324

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G 
Sbjct: 325 YKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGV 384

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +  A W +
Sbjct: 385 RQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWYM 444

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+ +     L D YG+E+E  Y          +    R ++   + R ++  L ET
Sbjct: 445 MCPHEIHEVKGYYLEDCYGEEWERKYYECVED----DRIPKRVMTVKEIVRLIIKSLVET 500

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 501 GTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKTK 560

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L      N    D+L   I   +R LDNVID+N + I  AK +N  +
Sbjct: 561 PGDFVVCNLASLTLGHLDVLND---DELRHVISVVIRALDNVIDLNYYPIPFAKITNQKY 617

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+YS F G
Sbjct: 618 RAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFNG 677

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S ++ G + I                R     W  L+ ++K  G+RN   +AIAPT++ +
Sbjct: 678 SDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSSTS 723

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + ++DP  +  +++       T V      +L     W                 
Sbjct: 724 IIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW----------------- 762

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                     ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +KL  +Y +A
Sbjct: 763 ----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIKA 812

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 813 WEYGVKTLYYVRSQSLEVEECES 835


>gi|205359118|ref|ZP_02667324.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205338509|gb|EDZ25273.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 780

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 207/818 (25%), Positives = 341/818 (41%), Gaps = 79/818 (9%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++ P+Y  + AR  +  LR++          
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----- 116

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E   LY  +  + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 117 -----EPPALY-HHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +Y +   + G   E  Q  ++ VA  L      + +      FY+ +S+F     TP 
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPI 230

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 231 MSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGG 290

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  R  
Sbjct: 291 EAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVR 350

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE      + 
Sbjct: 351 HMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK- 409

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT---- 589
              +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI     
Sbjct: 410 ---QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTK 466

Query: 590 ----LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  
Sbjct: 467 PLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPA 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+
Sbjct: 522 AKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQ 581

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   F  + + +G+ PID+         +  +N      W +L++ +KT G+RNS   A
Sbjct: 582 GACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSA 637

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + +K++  G    V         +       ++ ++ 
Sbjct: 638 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMP 692

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG 882
            +DG +                                QK+IDQ+ S N   D    PSG
Sbjct: 693 NNDGYLQ--------------------------LVGIMQKFIDQSISANTNYDPSRFPSG 726

Query: 883 K----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K    +L      A+  G+KT YY  +R      +  L
Sbjct: 727 KVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 764


>gi|167760515|ref|ZP_02432642.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
 gi|167661881|gb|EDS06011.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
          Length = 843

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 274/918 (29%), Positives = 436/918 (47%), Gaps = 115/918 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   ++ P KI RA+  AF +V        +   +    L +    ++     
Sbjct: 1   MRISKRNGTNEAYCPEKIKRAVSLAFQSVGN------LLSDEEADRLLKNVEQKIDDRIT 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD VE +LM++ H+K  + Y+LYREER+  R ++       P   +L ++
Sbjct: 55  EEPSVSVEEIQDFVEQALMEANHYKELKSYILYREERARKRKSRKKLADKIPAFDRLALV 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D          ++    +    L+ + +K             L++ +  + LI ++  
Sbjct: 115 LAD----------IQKEFTQEEYDLEHLYAKFQAFGK-----PELNDQEKLSMLIKAAVE 159

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  V AR L+       L    K  +      ++C Y +      E+G+   
Sbjct: 160 LTTQEAPQWEMVAARLLM-------LDFEQKLEKNMRRCHIECFYDK-LAYLTEQGLYGD 211

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + ++    ++  L   ++ +R+  F Y GL++L  RY +    G  +E PQ  F+ +AM
Sbjct: 212 YILKAYDRDEIERLVLFIEPKRNHLFTYSGLELLLGRYVIRTGKGVPMESPQEMFLGIAM 271

Query: 327 GLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+KE  ++E     FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 272 HLAMKEKKDRESWVKRFYDMLSQLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYR 331

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+
Sbjct: 332 SIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQ 391

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F K    N    W L  
Sbjct: 392 GAVAVYLDVWHRDLPEFLGLRTNNGDDRMKAHDVFPAVCYPDYFWKGARDNIEGDWYLMC 451

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D +G+++E  Y++  R +        R I    + R ++    ETG 
Sbjct: 452 PHEILTVKGYALEDYFGEDWEERYQDCVRDSRI----QKRVIPIKDIIRLIIKSAVETGT 507

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+   +D  N  +P  H G+++ SNLCTEI  N S                         
Sbjct: 508 PFTFNRDTVNRANPNSHKGIIYCSNLCTEIAQNMSAIEQVEQKIEEIDGETVVVTVTKPG 567

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL S++L         D +++A    +AVR LDNVID+N   +  A+ +N  +R 
Sbjct: 568 EFVVCNLASLSLGRL---ELADEEEIAYITESAVRALDNVIDLNFFPVPYARINNRKYRP 624

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+   L    I + S E +E  ++    I + AI AS  +A+E+G+Y  F+GS 
Sbjct: 625 IGLGVSGYHHMLAKHEIAWESEEHLEFVEKVFADIHYAAIKASSRIAREKGSYEYFEGSG 684

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 +   W+EL+  V   G+RN   +A+APT++ + I
Sbjct: 685 WQNGSYFAD--------------RGLTDGRWEELRAEVAEYGLRNGYLLAVAPTSSTSII 730

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP     +++   +G    V      EL   + W                   
Sbjct: 731 AGTTAGLDPIMSRYFLEEKKNGLMPRVAP----ELSMDNFW------------------- 767

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                    +  A  ID  W + +   RQ+ IDQAQS+NLY  +E + +K+  +Y  AW 
Sbjct: 768 --------YYKNAHYIDQYWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWE 819

Query: 895 MGLKTTYYLRSRSATSVE 912
            G+KT YY+RS+S    E
Sbjct: 820 EGVKTIYYIRSKSLEVEE 837


>gi|167756570|ref|ZP_02428697.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
 gi|167702745|gb|EDS17324.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
          Length = 846

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/923 (28%), Positives = 444/923 (48%), Gaps = 121/923 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K + + KRNG    +D +KI  AI KAF ++        ++   +I ++ +  +  +  
Sbjct: 9   VKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDDELK--KMIADIEKHIIADM-- 64

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R       +        
Sbjct: 65  --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 116

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+++           ++           ++ S +++L +      +G+S  +    L+ +
Sbjct: 117 KVLL-----------KIHK-----DYPQEEYSLQLLLVKFKTFYKEGMSHFEALKMLMKA 160

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  LI KE P +  ++ARFL   + ++V   +    +   +  +  L         ++G 
Sbjct: 161 SVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYLA--------QQGY 212

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323
             + + ES    ++  L   +   R+  F Y GL+++  RY +  +    IE PQ  FM 
Sbjct: 213 YGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFMS 272

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D L GI
Sbjct: 273 IAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGI 332

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G 
Sbjct: 333 YKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGV 392

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +  A W +
Sbjct: 393 RQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWYM 452

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+ +     L D YG+E+E  Y          +    R ++   + R ++  L ET
Sbjct: 453 MCPHEIHEVKGYYLEDCYGEEWERKYYECVED----DRIPKRVMTVKEIVRLIIKSLVET 508

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 509 GTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKTK 568

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L      N    D+L   I   +R LDNVID+N + I  AK +N  +
Sbjct: 569 PGDFVVCNLASLTLGHLDVLND---DELRHVISVVIRALDNVIDLNYYPIPFAKITNQKY 625

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+YS F G
Sbjct: 626 RAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFNG 685

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S ++ G + I                R     W  L+ ++K  G+RN   +AIAPT++ +
Sbjct: 686 SDFETGAYFIK--------------RRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSSTS 731

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + ++DP  +  +++       T V      +L     W                 
Sbjct: 732 IIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW----------------- 770

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                     ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +KL  +Y +A
Sbjct: 771 ----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIKA 820

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 821 WEYGVKTLYYVRSQSLEVEECES 843


>gi|198243793|ref|YP_002216346.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938309|gb|ACH75642.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 780

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 206/818 (25%), Positives = 341/818 (41%), Gaps = 79/818 (9%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ++R D+  +++  + +  +   L +   DG     N  ++  +++ A  GL +VS   V 
Sbjct: 2   DKRGDIFLSRTGKQVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVE 61

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQ 241
             ++   YDG+  SD+   +I ++  LI ++  +Y  + AR  +  LR++          
Sbjct: 62  LRSHIQFYDGIKTSDIHETIIKAAADLISRDASDYQYLAARLAIFHLRKKAFGQF----- 116

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E   LY  +  + +E G     L E   + +   + + + ++RD  F Y  ++ L
Sbjct: 117 -----EPPALY-HHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQL 170

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +Y +   + G   E  Q  ++ VA  L      + +      FY+ +S+F     TP 
Sbjct: 171 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPI 230

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 231 MSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGG 290

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K       + +QGG R GA   +   WH++VE  L L+ N G +  R  
Sbjct: 291 EAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVR 350

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    I  L   R+ +    TLFSP +V  L+D +     EFE  Y  YE      + 
Sbjct: 351 HMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK- 409

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT---- 589
              +++ AV L+  M+     TG  +I   D CN  SP    V  V  SNLC EI     
Sbjct: 410 ---QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTK 466

Query: 590 ----LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +N  + E A+C L + NL A         D+L      AVR LD ++D   + I  
Sbjct: 467 PLNDVNDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPA 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK+     R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+
Sbjct: 522 AKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQ 581

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   F  + + +G+ PID+         +  +N      W++L++ +KT G+RNS   A
Sbjct: 582 GACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSA 637

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + +K++  G    V         +       ++ ++ 
Sbjct: 638 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMP 692

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSG 882
            +DG +                                QK+IDQ+ S N   D    PSG
Sbjct: 693 NNDGYLQ--------------------------LVGIMQKFIDQSISANTNYDPSRFPSG 726

Query: 883 K----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K    +L      A+  G+KT YY  +R      +  L
Sbjct: 727 KVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 764


>gi|299144103|ref|ZP_07037183.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518588|gb|EFI42327.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 843

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/924 (29%), Positives = 446/924 (48%), Gaps = 122/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             + KR+G +  FD +KI +AI+KA+ +++ +        +++I  +       LL    
Sbjct: 2   FNIKKRDGRLVEFDRNKIEKAILKAYKSLDREPD------ENVINEMACSVENLLLNKFP 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
           S  I  +E+IQD VE +L+++  +++ + Y+LYR + +  R          +D  +   +
Sbjct: 56  SNHIATVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNRKIIEKFSEYITDNNVIDII 115

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + + +D     ++ ++L   ++                     +   +++     A+I +
Sbjct: 116 RDIQNDFDRTHYDIEQLF--LKW-----------------NSFLKKDMTQRQYLLAIIKA 156

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  KE PN+  ++ARF++      +     K+  K  + +++ L         +EG+
Sbjct: 157 AAELTSKESPNWEYISARFMVYDNNSSIKQNSEKRGIKNFYDKIKTL--------TDEGL 208

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               + +   + D+  L   +   RD  F Y GL ++  RY +    G+ +E  Q  FM 
Sbjct: 209 YGDYILKEYTEEDINELEVYMDSSRDKLFNYSGLDLIVKRYLIRDSEGNVLENIQEMFMG 268

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           ++M LA+ E   K   A + Y++LS+     +TPT+ N+   + QLSSCF+  VPD L G
Sbjct: 269 ISMHLAIPEGNNKVSFAKKLYDILSTLKITVATPTMSNARKPYHQLSSCFIDIVPDSLTG 328

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  +   A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G
Sbjct: 329 IYRTIDNFAQVSKHGGGMGIYFGKVRSQGSDIRGFKGVAGGVVRWIRLTNDTAVAVDQLG 388

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500
            R+G+V  YL+ WH D+ EFL LR N GDDR++ HD+  A   PDLF +    N  A W 
Sbjct: 389 VRQGSVAVYLDVWHKDMPEFLQLRTNNGDDRQKAHDVFPAVSYPDLFWRLAKNNIEATWY 448

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P E+       L D YG E+E  Y  YE           R IS   + R ++  L E
Sbjct: 449 LFDPHEIEQIMGYKLEDYYGDEWEKRY--YE--CVNNNKLSRRTISVKDMIRLIIVSLTE 504

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+   +D  N  +P +HVG+++SSNLCTEI  N  + ET                  
Sbjct: 505 TGTPFTFNRDAANKANPNKHVGMIYSSNLCTEIMQNMKAIETMDTRIEEINKDSYITKVT 564

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S+ L      N  D  +L + +   VR LDNVID+N + +  A+ +N  
Sbjct: 565 KAGDFVVCNLASLVLGNI---NLEDEKELENIVSITVRALDNVIDLNYYPVPYAEITNQK 621

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+  AL    I ++S E +E  D+  E I++ AI AS E+A+E+GAY  F 
Sbjct: 622 YRAIGLGTSGYHHALVQRGIMFSSEEHLEFMDKIYENINYFAIKASSEIAKEKGAYKYFN 681

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W+ G +                    S   W +L++ V+  G+RN+  MAIAPT + 
Sbjct: 682 GSEWESGEY--------------FRRRDYSSNRWKDLQESVRVNGLRNAYLMAIAPTGST 727

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G S  +DP  +  +++         +   +   L  +  W+               
Sbjct: 728 SIIAGTSAGVDPVMKRYFLEEKKG----SIIPRVAPGLNAKTFWN--------------- 768

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
                       +  A E+D  W+I +AS RQ+ IDQ QS+NLY+    + +K+  +   
Sbjct: 769 ------------YENAHEVDQDWIIRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLIS 816

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           A  MG+K+ YY+R +S    E  T
Sbjct: 817 ANEMGIKSIYYVRGKSLEVEECDT 840


>gi|261340637|ref|ZP_05968495.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317050|gb|EFC55988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 761

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 206/800 (25%), Positives = 335/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     E    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKD----ESIRKQRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGIVSEPLHLDWEGLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +    +  ++ ++  +DG +            
Sbjct: 637 PPRGHVSIKASKDGVLRQVVPDY-----ETLGNNYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  +
Sbjct: 726 VKTLYYHNTRDGAEDAQDDM 745


>gi|296103862|ref|YP_003614008.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058321|gb|ADF63059.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 761

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 209/800 (26%), Positives = 335/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISREAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIANAPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         ++   +  ++ ++  +DG +            
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDY-----EQLKDNYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYHNTRDGAEDAQDDL 745


>gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 610

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 336/626 (53%), Positives = 427/626 (68%), Gaps = 21/626 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KRNG   +F+ + I+ A+ KAF A  G+ AS+S  ++++I ++ E     +       
Sbjct: 4   VVKRNGQPVAFNGALIAAALSKAFNATLGESASQSSHLREVIASIVEGVTNAVA----GK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM        R Y+LYREER+ VR              +L    +
Sbjct: 60  PSVDVETIQDLVERGLMAKDEAATARAYILYREERNKVRR-------PPEAPAQLYYTDE 112

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                  + + L   + +AC  L +VS+  + ++T KN + G+   D+  A++ ++R +I
Sbjct: 113 ADQTHPLSVELLTDYLAQACQDLPNVSASKLAADTLKNAFPGIKWGDVLKAMLITTRAMI 172

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E+EP+Y+ V AR L  +L+ E         +          Y +     +E GVK   L+
Sbjct: 173 EQEPDYSFVNARLLWLELKNE--------SRAVLGLGSDATYADDLKAALEFGVKNDHLN 224

Query: 271 ESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
             ++D  FD+  L   L+ + D  F YLG Q LYDRYFLH NG + E PQ FFMRVAMGL
Sbjct: 225 PVLIDGTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMGL 284

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L+E +  +RA+EFYNL SSF +M STPTLFN+GT   QLSSC+LTTVPDDL GI+ A+ 
Sbjct: 285 SLEEKKPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAIH 344

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 345 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 404

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP +  
Sbjct: 405 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDAP 464

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL GK FE  Y  YE  AD GEIKV+++I+A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 465 DLHDLVGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPCN 524

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + + D  KL  TI TA
Sbjct: 525 LRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINTA 584

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHR 654
           VR+LDNVIDIN +++ +A+ SN  HR
Sbjct: 585 VRILDNVIDINYYSVPQAENSNLKHR 610


>gi|200388863|ref|ZP_03215475.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605961|gb|EDZ04506.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 761

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 206/800 (25%), Positives = 333/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE     G+    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NGDSIRKQRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|319936386|ref|ZP_08010802.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
 gi|319808501|gb|EFW05053.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
          Length = 835

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/920 (30%), Positives = 444/920 (48%), Gaps = 121/920 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI  AI+KAF  +      +   +++I+ ++ +Q   R      
Sbjct: 1   MLIQKRNGLYQDYDRHKIENAIIKAFEGIHETIHQQ--HLENILNDVEDQIQER------ 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +E IQD+VE +LM+ G+ ++ + Y+LYRE+   +R           +  +L  M
Sbjct: 53  ----ISVEYIQDKVEEALMRHGYLQVAKAYILYREKHHHLRI----------VIEELMQM 98

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++D  + S    +++           + S +++L +      +G+++ D    L+ +S  
Sbjct: 99  LNDEGIESL-LIKIQK-----DYPQTEYSLQLLLVKLKTFYKEGMNQHDAFKMLMKASVE 152

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI K+ P + K++ARFL   + + +   +      + + ++  L         +E     
Sbjct: 153 LISKDAPEWEKISARFLTYDIHQRIQEKMETMGIYSFYDKLVYL--------TKENYYGD 204

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E     D+  L + +K ER+  F Y GL+++  RY +   N   +E PQ  FM +AM
Sbjct: 205 YILEHYSHKDIQELESYMKDERNEVFTYSGLELIMKRYLIQDRNRDILEKPQEMFMGIAM 264

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+KE EK K A + Y++LS+     +TPT+ N+     Q+SSCF+ TV D L GI+ +
Sbjct: 265 HLAMKEKEKVKWAKDIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGIYKS 324

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L   A ++K+ GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G R+G
Sbjct: 325 LDNFAKVSKHGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGVRQG 384

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           A   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +    W +  P
Sbjct: 385 AAAVYLDAWHRDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKSDLDASWYMMCP 444

Query: 505 DEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+ +     L D YG+E+E  Y          E    R +S   + R ++  L ETG P
Sbjct: 445 HEIHEVKGYYLEDTYGEEWERKYYECVED----ERISKRVMSVKDIVRLIIKSLVETGTP 500

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597
           +   +D  N  +P  H G+++ SNLC+EI  N SS E                       
Sbjct: 501 FAFNRDHVNRMNPNAHQGMIYCSNLCSEIAQNMSSMEILPHEQIQIDGETIVVEKTKPGD 560

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      N     +L   I   +R LDNVID+N + +  AK +N  +R +
Sbjct: 561 FVVCNLASLTLGHIDVKND---KELQHIIYVVMRALDNVIDLNYYPVPYAKITNQKYRPV 617

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L  L + + S E +E  D+  E I+++A+ AS  LA+E+G Y  F GS +
Sbjct: 618 GLGTSGYHHMLVKLGMTFESHEHLEFVDQLYEKINYYALEASCALAKEKGKYDYFDGSDF 677

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           D G +                        W  L+  +   G+RN   +A+APT++ + I 
Sbjct: 678 DTGAY--------------FEKRHYQSSSWQVLQNDIHEYGLRNGYLLAVAPTSSTSIIA 723

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G + ++DP  +  +++       T V      +L  +  W                    
Sbjct: 724 GTTAAVDPIMKKFFMEEKKGSMMTRVAP----DLNMKTFW-------------------- 759

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLM 895
                  ++  A  ID  W+IE+A  RQ+ IDQ+QS+NLY  +E + +KL  +Y +AW  
Sbjct: 760 -------LYKNAHHIDQQWVIEAAGIRQRHIDQSQSVNLYITNEFTFRKLLDLYIKAWEK 812

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY+RS+S    E  +
Sbjct: 813 GVKTLYYVRSQSLEVEECES 832


>gi|329298016|ref|ZP_08255352.1| ribonucleotide-diphosphate reductase subunit alpha [Plautia stali
           symbiont]
          Length = 761

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++  +            E   LY +   + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYSQF----------EPPKLYDQIV-KM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDRHLLEDYSTEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    +  V  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I +  + AS ELA+E+GA   FK + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYWLLKASNELAKEQGACPWFKETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DSVCNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGVLRQVVPEY-----ERLKDQYELLWEMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                               QK+IDQA S N   D       +   K+L      A+  G
Sbjct: 681 ---------------LVGVMQKFIDQAISSNTNYDPGRFANGKVPMKQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|194444716|ref|YP_002041538.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403379|gb|ACF63601.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 761

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|229816570|ref|ZP_04446869.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
 gi|229807905|gb|EEP43708.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
          Length = 913

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 287/955 (30%), Positives = 436/955 (45%), Gaps = 126/955 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-------RSIRVQDIIKNLTEQTVTRL 83
           + KR+G    FD +KI  A+ +AF  V  + A+              +  +  E  +  +
Sbjct: 12  IKKRDGRSERFDGAKIVEAMRRAFEDVADEQAAARGLIAGHGASAPAVSADELEALLASI 71

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK------- 136
            Q      +  +E +QD VE +LM+ GH ++ + Y+LYR ER++ RA +           
Sbjct: 72  EQAMDRDAVDCVEGVQDLVERALMERGHFEVAKSYILYRHERAEKRAVRVELARAVAGLD 131

Query: 137 -------------SDAPIAPKLKIMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIV 181
                          +           D   +  +    R++   ++    L  +S++  
Sbjct: 132 GEIACEEGRAAAGVPSAADDDTAAAPKDHLAVELDRTLARIQRDFDDPAYDLAMLSAR-- 189

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKP 240
                     G        ALI ++  L  +E P +  + AR          L   + + 
Sbjct: 190 -FRALTG--AGQDADARLGALIRAAVELTSQEAPRWEMIAARL---------LDLSFMRH 237

Query: 241 QKATHHEMQCL-YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             AT  E+    + E      E G+    +  S    +L   A  +  ERD  F Y GL 
Sbjct: 238 LAATRRELGIASFGELVRYLTERGLYGDYILASYSVSELEEAAAFMVSERDELFAYSGLD 297

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTP 356
           +L  RY +   + + +E PQ  F+ +A+ LA+ E   ++ A    FY++LS      +TP
Sbjct: 298 LLISRYVIRAHDHTPLESPQEMFLGIALHLAMNEEPTQRLAWVKRFYDMLSKLEVTMATP 357

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+     QLSSCF+ TVPD L GI+ ++   A ++KY GG+G     VR  G  I G
Sbjct: 358 TLSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVRATGGSIRG 417

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             G + GVI +++V NDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + 
Sbjct: 418 FEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTNNGDDRMKA 477

Query: 477 HDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQA 529
           HD+  A   PDLF +   +  +  W L  P ++       L D YG E+E  Y +     
Sbjct: 478 HDVFPAVCYPDLFWRMAEESLDQDWHLMCPHDILQVKGYALEDFYGDEWERRYRDCVADP 537

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              +    R+I    L R +L    ETG P+   +D  N  +P  H GV++ SNLCTEI 
Sbjct: 538 RISK----RRILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNGHEGVIYCSNLCTEIA 593

Query: 590 LNSS-----------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N+S                         +  VCNL S++L         D + +   I 
Sbjct: 594 QNTSAIEEVTREVVTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DDEVMGHVIE 650

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR LDNVID+N + +  A+ +NH +R+IGLG+ G+   L    I + S + +  ADE 
Sbjct: 651 TAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGISWESEDHLAFADEV 710

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELAMNRT 741
            E I++HAI AS  LA+ERGAY  F+GS W  G +        S G +AEVR+       
Sbjct: 711 FERINYHAIRASERLAEERGAYGLFEGSDWQTGAYFAKRGYCSSSGEVAEVRE----GAM 766

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W EL + V   G+RN+  +AIAPT++ + + G +  IDP  +  +++         
Sbjct: 767 GSERWGELAEAVARNGVRNAYLLAIAPTSSTSILSGTTPGIDPIMRKFFLEEKKGSMLPR 826

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V      EL  R  W                            +  A  I+  W + +A 
Sbjct: 827 VAP----ELSPRTYW---------------------------YYKPAHYIEQTWSVRAAG 855

Query: 862 RRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            RQ+ IDQAQS+NLY+    + +++  +Y +AW  G+KT YY+RS+S    E  +
Sbjct: 856 VRQRHIDQAQSMNLYITNDYTLRQVLRLYLEAWRRGVKTIYYVRSKSLEVEECES 910


>gi|56412826|ref|YP_149901.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62180850|ref|YP_217267.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|168261710|ref|ZP_02683683.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466026|ref|ZP_02699896.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817992|ref|ZP_02829992.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197361759|ref|YP_002141395.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127083|gb|AAV76589.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62128483|gb|AAX66186.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|195631245|gb|EDX49805.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197093235|emb|CAR58680.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205344941|gb|EDZ31705.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349577|gb|EDZ36208.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086714|emb|CBY96486.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715326|gb|EFZ06897.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 761

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|168237292|ref|ZP_02662350.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197289598|gb|EDY28961.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 761

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|238913486|ref|ZP_04657323.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 761

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPIVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|330837705|ref|YP_004412346.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
 gi|329749608|gb|AEC02964.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
          Length = 848

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/924 (27%), Positives = 412/924 (44%), Gaps = 119/924 (12%)

Query: 26  IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++ +IKR G   ++   KI+ A+  AF +              I+  LT +    L 
Sbjct: 1   MPAMETIIKRTGKPETYQEHKITAAMKAAFAS------RSHTADDTILSRLTGEVHDELT 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + + S  +V +E IQD VE  LM+  +  + + Y+LYR  R+  R  +    +  P+   
Sbjct: 55  RLHASGTMVDVELIQDTVEKILMKHEYFDVAKSYILYRSVRTKKRDDRKKILNLLPVPE- 113

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
                    L       ++    +A   L      ++  +       G+   +    L+ 
Sbjct: 114 ---------LEPVLIS-IQRDYADAPYQLD-----LLYGKFSAFSKPGMETDESLGMLVR 158

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  +  ++ P++  + AR                  +K                   EG
Sbjct: 159 AAVEMTTQDAPDWEFIAARLR--------YLQFSLTLKKQESRYGFSDLFGKIRFLTTEG 210

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           +    + E     ++   A  +  +R+    Y  L +L  RY +    G  +E PQ  F+
Sbjct: 211 LYGAYILEKYTHEEIDRAAAFIDEKRNDFLTYSALDLLLQRYVIRSHEGELLETPQELFL 270

Query: 323 RVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  ++      FY+++S+     +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 271 GIALHLAMDEKKDRLDWVRRFYDMISTLKVTMATPTLSNARKPYHQLSSCFIDTVPDTLD 330

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   + ++K+ GG+G  +  VR +G+ I    G + GVI ++K+ANDTAVAV+Q 
Sbjct: 331 GIYRSVTNFSQVSKFGGGMGLYFGKVRAVGSAIRDFKGVAGGVIRWIKLANDTAVAVDQL 390

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+      PDLF + V  +    W
Sbjct: 391 GMRQGAVAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPGVCYPDLFWRMVENDIEGTW 450

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            L  P E+       L D YG E+E  Y               R I    L R ++    
Sbjct: 451 NLMCPYEIYKVKGYHLEDSYGDEWEKRYHECLNDP----AVPKRPIKIKELVRMIIKSGV 506

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591
           ETG P+  F+D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 507 ETGTPFAFFRDAVNKANPNAHKGMIYCSNLCTEIAQNMAPITQESVEVTTEGAGGDIVVV 566

Query: 592 --SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             +   E  VCNL S+ L     ++  + + + +     VR LDNVID+N + +  A+ +
Sbjct: 567 EKTKPGEFVVCNLASLVLGNINVDDPVEVEGIVTAT---VRALDNVIDLNMYPVPYAEIT 623

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +RAIGLG  G+   L    + + S   + IAD   E I++ A+ AS ++A E+G+Y+
Sbjct: 624 NKRYRAIGLGTSGYHHMLAKKGVAWESEAHLGIADRVFEAINYWAVKASSDIAAEKGSYA 683

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W  G +                    +   W  L+  V   GMRN+  +AIAPT
Sbjct: 684 YFEGSDWQTGAYFDK--------------RNYTGDRWAALRSTVAKQGMRNAYLIAIAPT 729

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           ++ + + G +  +DP  +  +++         +   +  EL  +  W             
Sbjct: 730 SSTSILAGTTAGLDPVLRRFFLEEKKK----NILPRVAPELSPKTYW------------- 772

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
                         ++  A  ID +W + +A  RQ+ +DQAQSLNLY+    S +++  +
Sbjct: 773 --------------LYKNAHLIDQIWTVRAAGVRQRHVDQAQSLNLYITTDMSFRQIMNL 818

Query: 889 YRQAWLMGLKTTYYLRSRSATSVE 912
           Y +AW  G+KT YYLRS++    E
Sbjct: 819 YVEAWKNGVKTIYYLRSKALEVDE 842


>gi|168229640|ref|ZP_02654698.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469857|ref|ZP_03075841.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249651|ref|YP_002147233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194456221|gb|EDX45060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213354|gb|ACH50751.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205335883|gb|EDZ22647.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 761

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 331/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|210631891|ref|ZP_03297103.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
 gi|210159816|gb|EEA90787.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
          Length = 919

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 281/967 (29%), Positives = 432/967 (44%), Gaps = 137/967 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK----------------------- 60
           E+     + KR+G    ++P KI  A+ +AF  V G                        
Sbjct: 12  ERTAAGVIRKRDGRTEPYEPGKIIEAMRRAFADVYGDAGWQRSGTQAAANDQRPDAPAGP 71

Query: 61  --------GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                     + + R     ++     +  + +   ++ I  +EDIQD VE +LM+ GH 
Sbjct: 72  DGQLSRERSEAHTERPAADQEDELLALLAMVERSMSTSAIQSVEDIQDLVERALMERGHF 131

Query: 113 KITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
           ++ + Y+LYR  R++ RAA+    SD  +     +             R++    E    
Sbjct: 132 EVAKNYILYRHHRAEKRAARLELASDVAVDGVDDV-----------LARIQRDFPEEAYD 180

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRRE 231
           L  +S++     T+    +G  E     ALI ++  L  +E P +  + AR       R+
Sbjct: 181 LAVLSAR---FRTFTG--EGQDEPARLEALIRAAIELTSQEAPRWEFIAARLRDFAFARD 235

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           +         +     +            ++G+    +  +    +L   A  +   RD 
Sbjct: 236 LAAARSALGIETFSQLIH--------HLTDQGLYGAYILAAYSGAELDQAATYMDPSRDE 287

Query: 292 AFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSS 348
            F Y GL +L  RY +H  + + +E PQ  F+ +A+ LA+ E   ++ A    FY++LS 
Sbjct: 288 LFTYSGLDLLIRRYVIHGHDHTPLESPQEMFLGIALHLAMNEPPAQRLAWVRRFYDMLSR 347

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPT+ N+     QLSSCF+ TVPD L GI+ ++   A ++KY GG+G     VR
Sbjct: 348 LEVTMATPTMSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVR 407

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G + GVI +++V NDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N
Sbjct: 408 ATGGSIRGFEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTN 467

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GDDR + HD+  A   PDLF +   +  +  W L  P ++       L D YG+E+E  
Sbjct: 468 NGDDRMKAHDVFPAVCYPDLFWRMAEESLDQQWHLMCPHDILTIKGYALEDSYGEEWERR 527

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +             R I    L R +L    ETG P+   +D  N  +P  H GV++ 
Sbjct: 528 YRDCVADPRIP----TRTILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNSHEGVIYC 583

Query: 582 SNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N+S                         +  VCNL S++L         D 
Sbjct: 584 SNLCTEIAQNTSAIQEVTREVRTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DD 640

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             +   I TAVR LDNVID+N + +  A+ +NH +R+IGLG+ G+   L    + + S E
Sbjct: 641 AAMGRVIETAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGVSWESEE 700

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---------PIDSIGLL 729
            + + DE  E I++HAI AS  LA+ERGA   F+GS W  G +         P D     
Sbjct: 701 HLRLVDEVFERINYHAICASERLAEERGANGVFEGSEWQSGAYFAKRGYCPLPCDGSEPE 760

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           A               W EL  RV   G+RN+  +A+APT++ + + G +  IDP  +  
Sbjct: 761 AASAVVTREGAIGSKRWGELAARVAEHGVRNAYLLAVAPTSSTSILSGTTPGIDPIMRKF 820

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +++         V      EL  +  W                            +  A 
Sbjct: 821 FLEEKKGAMLPRVAP----ELSPQTYW---------------------------YYKPAH 849

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I+  W I +A  RQ+ IDQAQS+NLY+    + +++  +Y  AW  G+KT YY+RS+S 
Sbjct: 850 YINQHWSIRAAGMRQRHIDQAQSMNLYITNDYTLRQVLDLYIGAWRQGVKTVYYVRSKSL 909

Query: 909 TSVEKST 915
              E  +
Sbjct: 910 EVEECES 916


>gi|322617029|gb|EFY13935.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617665|gb|EFY14564.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624705|gb|EFY21534.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630254|gb|EFY27024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634435|gb|EFY31168.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639145|gb|EFY35837.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640142|gb|EFY36808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645770|gb|EFY42294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651545|gb|EFY47920.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656106|gb|EFY52405.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659458|gb|EFY55705.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665920|gb|EFY62103.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669842|gb|EFY65983.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673827|gb|EFY69924.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678585|gb|EFY74641.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683619|gb|EFY79633.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687695|gb|EFY83665.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323196208|gb|EFZ81365.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198376|gb|EFZ83478.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204186|gb|EFZ89197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208572|gb|EFZ93511.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212338|gb|EFZ97161.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218255|gb|EGA02965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222987|gb|EGA07336.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227422|gb|EGA11587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232250|gb|EGA16353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235717|gb|EGA19801.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241123|gb|EGA25159.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244865|gb|EGA28867.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248576|gb|EGA32507.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251596|gb|EGA35464.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255475|gb|EGA39238.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263077|gb|EGA46623.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268137|gb|EGA51614.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270770|gb|EGA54208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 761

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 331/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|260591986|ref|ZP_05857444.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
 gi|260536270|gb|EEX18887.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
          Length = 840

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/923 (28%), Positives = 441/923 (47%), Gaps = 122/923 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    ++ +KI+ AI K+F++         I+ ++I   + E  V +++  N 
Sbjct: 1   MDIIKRNGESERYNNNKIAIAIKKSFISTGKP-----IKDEEIAAMVAE--VEQIIIDNP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQ+QVE  LM  GH+   + ++L+R +R++ R A +     A       ++
Sbjct: 54  DQR--TVEEIQNQVEKHLMMHGHYDEAKNFILFRYQRNEQRKAINDIARMADDTELTTVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
            D                  A    + V S + L E + N+    +S  +    LI ++ 
Sbjct: 112 QDV-----------------AREYRERVYSMVTLQEKFANLCKPSMSHKEAIDTLIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +      +++++ +          EG+  
Sbjct: 155 ELTTPEAPAWEMISARILSYRAEQKIKKQEDEIGIDGFYNKLKYM--------TSEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             + ++  + ++   A  +K ER+    Y GL +L  RY +    G  IE  Q  ++ +A
Sbjct: 207 EYILQNYTEEEINEAATFIKEERNKLLNYSGLDLLLKRYVIKNYAGKAIERVQEMYLGIA 266

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA+ E ++ +       Y++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 267 LHLAMPEQKENRLMWVHRIYDMLSKLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDGI 326

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G 
Sbjct: 327 YRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLGM 386

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +N    W L
Sbjct: 387 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMADENLDQNWYL 446

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+E+       L D YG+E+E  Y +        +    R IS   + R +L    ET
Sbjct: 447 FCPNEIMRIKGYCLEDCYGEEWERKYLDCVND----QRLTRRVISIKDIIRLVLRSAVET 502

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 503 GTPFTFNRDTVNRANPNHHKGMIYCSNLCTEIAQNMAPIETVSKTIETKDGETIVVTTTK 562

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N  +
Sbjct: 563 PGEFVVCNLASLSLGRLPLE---DEEQMREKVATIVRALDNVISLNFYPVPYAEITNQKY 619

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+Y  F+G
Sbjct: 620 RSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRSAILASSNLAKEKGSYQYFEG 679

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G++                        W E++K V   GMRN+  +A+APT++ +
Sbjct: 680 SDWQTGLYFDK--------------RGYDSDEWKEVRKTVALQGMRNAYLLAVAPTSSTS 725

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++         V                               
Sbjct: 726 IIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP----------------------------- 756

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
              + D+   ++ +A+ I+  W I+++  RQ+ IDQAQS+NLY+    + +++  +Y  A
Sbjct: 757 --ELSDETYWMYKSAYLINQKWSIKASGVRQRHIDQAQSMNLYITNDFTMRQVLDLYLLA 814

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  G+KT YY+RS+S    E  +
Sbjct: 815 WKSGVKTIYYVRSKSLEVEECES 837


>gi|311278799|ref|YP_003941030.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747994|gb|ADO47746.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 761

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 212/801 (26%), Positives = 333/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISREAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDTSIRQ----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAISG-----LDELEDLAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      WD L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAVVNEPLHYDWDGLREAIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +     LW      ++  +DG +           
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYHNTRDGAEDAQDDL 745


>gi|300717618|ref|YP_003742421.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
 gi|299063454|emb|CAX60574.1| Ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
          Length = 761

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 208/801 (25%), Positives = 334/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++               E   LY +   R 
Sbjct: 61  TVIKSAADLISRDAPDYQYMAARLAIFHLRKKAYGQF----------EPPKLYDQ-VKRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDRHLLEDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE +    +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTKYENEPSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLLDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ +
Sbjct: 466 AFNLGAINS-----LDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I F+ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAIQFYLLKASNELAKEQGACPWFNETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L WD L++++KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISSEPLHLDWDGLREQIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDSYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D P+         K+L      A+  
Sbjct: 681 ---------------LVGLMQKFIDQAISSNTNYD-PTRFANGRVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDTQEDL 745


>gi|167549729|ref|ZP_02343488.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325233|gb|EDZ13072.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 761

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVGKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|317048918|ref|YP_004116566.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950535|gb|ADU70010.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 761

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 206/801 (25%), Positives = 330/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALYDQVV-KM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  
Sbjct: 110 VEMGKYDRHLLEDYSKEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRATRMDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTTYEKDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPT 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DSICNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWEMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K+L      A+  
Sbjct: 681 ---------------LVGVMQKFIDQAISSNTNYD-PSRFANGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDAQDDL 745


>gi|16765604|ref|NP_461219.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992611|ref|ZP_02573708.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|585857|sp|P37426|RIR1_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|295896|emb|CAA51452.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420816|gb|AAL21178.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205329161|gb|EDZ15925.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261247485|emb|CBG25312.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994367|gb|ACY89252.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158835|emb|CBW18348.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913267|dbj|BAJ37241.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223023|gb|EFX48094.1| Ribonucleotide reductase of class Ia aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130607|gb|ADX18037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989210|gb|AEF08193.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 761

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|322832010|ref|YP_004212037.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321167211|gb|ADW72910.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 760

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 208/802 (25%), Positives = 338/802 (42%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVIDWAAEGLQNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++     ++ P+                R 
Sbjct: 61  TIIKAAADLISKDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  YE YE+ A   +    +K+ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYEKYEQDASIRK----QKVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ AK+     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELAVLAVRALDALLDYQDYPIKAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P+
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACQWFNETTYSQGIMPV 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L WD L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICDEPLHLDWDTLRENIKTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQA S N   D    P+     K+L      A+  G
Sbjct: 681 ---------------LVGVMQKFIDQAISSNTNYDPSRFPNSKVPMKQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY  +R      +  +K 
Sbjct: 726 VKTLYYQNTRDGADDVQEDMKA 747


>gi|194448974|ref|YP_002046331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|207857696|ref|YP_002244347.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|194407278|gb|ACF67497.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|206709499|emb|CAR33843.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 761

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 331/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|242238483|ref|YP_002986664.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech703]
 gi|242130540|gb|ACS84842.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech703]
          Length = 762

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 208/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAFGQF----------EPPTLY-DHVVNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VDMGKYDRHLLEDYSQEEFTLMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFTDQDEFERLYVQYEQDDSIRK----KQLKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D  +L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAI-----SDLSELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ P+
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAQEQGACPWFGETTYAQGILPV 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DSVCNEALHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V   +   +     LW      D+  +DG +           
Sbjct: 637 PPRGHISIKASKDGILRQVVPEYETLKDAYELLW------DMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLM 895
                                QK+IDQA S N   D    PS     K+L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDVQDDL 745


>gi|291618169|ref|YP_003520911.1| NrdA [Pantoea ananatis LMG 20103]
 gi|291153199|gb|ADD77783.1| NrdA [Pantoea ananatis LMG 20103]
 gi|327394562|dbj|BAK11984.1| ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [Pantoea
           ananatis AJ13355]
          Length = 761

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 335/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALYDQVV-KM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDLGKYDRHLLEDYSREEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKMMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDSSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDASIAPVRQSNLCLEIALPTKPLSDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++++KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICNEPLHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWDMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQA S N   D    P+     K+L      A+  G
Sbjct: 681 ---------------LVGVMQKFIDQAISSNTNYDPSRFPNGKVPMKQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|204929225|ref|ZP_03220368.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321769|gb|EDZ06968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 761

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS EL++E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELSKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|197262131|ref|ZP_03162205.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240386|gb|EDY23006.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 761

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 332/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLQEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|300926339|ref|ZP_07142139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301328724|ref|ZP_07221777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300417616|gb|EFK00927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300844872|gb|EFK72632.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 761

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 335/796 (42%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+ +G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKLGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|323343337|ref|ZP_08083564.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
 gi|323095156|gb|EFZ37730.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
          Length = 838

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/924 (29%), Positives = 429/924 (46%), Gaps = 126/924 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG V  +D  KI+ AI K+F++     A   +     I    E  +        
Sbjct: 1   MEITKRNGSVEHYDKEKIATAIRKSFISTGNSVADTELYA---IVGAVENVINTHADRR- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR---AAQSHSKSDAPIAPKL 145
                ++E IQD+VE  LM+ G +   + Y+L+R +R++ R    A +    D  IA  L
Sbjct: 57  -----NVESIQDEVERKLMEKGFYNEAKSYILFRWKRTEQRKALNAIAEEIGDTAIAGIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K + +D     +    L                             G++E +  +ALI +
Sbjct: 112 KGIANDFYGSEYGISALSEKFNSFSR-------------------AGMNEDNKLSALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +   E P++  + AR    +L +++  + +++ +       +  Y        +E +
Sbjct: 153 AVEMTTAEAPDWEFIAARLASYQLNKDI--STFEETEGIHSLYEKLRY------LTDEKL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               + ++  + ++   A+ +  ER+    Y G+ +L  RY +   +   IE  Q  F+ 
Sbjct: 205 YGDYILKAYSEEEIAEAASFIVPERNNLLNYSGIDLLIKRYLMRTYSHRPIESVQEMFLG 264

Query: 324 VAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  +      +FY++LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMNERHRRMVWVRKFYDMLSLLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF +L   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IFRSLDNFAQVSKFGGGMGLYFGKVRAAGRKIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W 
Sbjct: 385 MRQGAAAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEEDINQQWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P+E+       L D YG+E+E  Y               R +S   + R +L    E
Sbjct: 445 MFCPNEIISVKGYSLEDYYGEEWEKRYRECVDDLRISR----RVMSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----------------- 598
           TG P+   +D  N  +P  H G+++ SNLCTEI  N S  ET                  
Sbjct: 501 TGTPFTFNRDIVNRTNPNAHRGIIYCSNLCTEIAQNMSEIETVANEIRTEEGDTVVVRAA 560

Query: 599 ------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  K+ + + T VR LDNVID+N + +  A+ +NH 
Sbjct: 561 KPGDFVVCNLASLSLGHLPLE---DDGKMKNIVSTVVRALDNVIDLNFYPLHYARITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S   +E  D+  E I+  AI AS +LA E+GAY+ F 
Sbjct: 618 YRSIGLGVSGYHHALAVRGIKWESERHLEFMDQVFERINRAAIEASADLAAEKGAYTYFD 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +      +  E              W ++ ++    GMRN+  +AIAPT++ 
Sbjct: 678 GSDWKTGKYFTKRGYMSKE--------------WQQIARKAAQ-GMRNAYLLAIAPTSST 722

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP  +  +++         V                              
Sbjct: 723 SIIAGTTAGVDPVMKRFFLEEKKGAMLPRVAP---------------------------- 754

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
               + D     +  A+ ID  W + +A  RQK +DQ+QS+NLY  +E + +++  +Y  
Sbjct: 755 ---NLSDKTYWAYKGAYLIDQKWSMRAAGIRQKHLDQSQSVNLYITNEYTMRQVLDLYLL 811

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  G+KT YY+RS+S    E  +
Sbjct: 812 AWKSGVKTLYYVRSKSLEVEECES 835


>gi|237732273|ref|ZP_04562754.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226907812|gb|EEH93730.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 761

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/800 (25%), Positives = 335/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++       +P K           ++  + 
Sbjct: 61  TIIKAAADLISREAPDYQYLAARLAIFHLRKKAYGEF--EPPKLF---------DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    + W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIANEPLHMDWEQLRESIKTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDSQDDL 745


>gi|260598670|ref|YP_003211241.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260217847|emb|CBA32363.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 774

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 205/802 (25%), Positives = 338/802 (42%), Gaps = 81/802 (10%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           P+   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+ 
Sbjct: 13  PMNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIH 72

Query: 200 TALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  +
Sbjct: 73  ETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVVK 121

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEM 316
            +E G     L +   + +   +   + + RD  F Y  ++ L  +Y +   + G   E 
Sbjct: 122 MVELGKYDHHLLQDYSEEEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYES 181

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L 
Sbjct: 182 AQFLYLLVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLI 241

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I               G+G +   +R LG+ I G      G IPF K     
Sbjct: 242 ECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTA 301

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ 
Sbjct: 302 VKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLL 361

Query: 495 QNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +    TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+  M+ 
Sbjct: 362 KGEDITLFSPSDVPGLYDAFFANQDEFERLYTTYEQD----ESIRKQRIKASELFSLMMQ 417

Query: 552 MLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI         +N  S E A+C L
Sbjct: 418 ERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDDSGEIALCTL 477

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ 
Sbjct: 478 SAFNLGAIDS-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVIN 532

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ P
Sbjct: 533 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILP 592

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+         +   +      WD L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 593 IDTYKKDL----DAIASEPLHYDWDALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 648

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ +K++  G    V      +LK +      ++ ++  +DG +           
Sbjct: 649 EPPRGHISIKASKDGILRQVVPD-YEQLKDK----YELLWEMPGNDGYLQ---------- 693

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK+IDQ+ S N   D P+         ++L      A+ 
Sbjct: 694 ----------------LVGIMQKFIDQSISANTNYD-PTRFTSGKVPMQQLLKDLLTAYK 736

Query: 895 MGLKTTYYLRSRSATSVEKSTL 916
           +G+KT YY  +R      +  L
Sbjct: 737 LGVKTLYYQNTRDGAEDAQDDL 758


>gi|283768722|ref|ZP_06341633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
 gi|283104508|gb|EFC05881.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
          Length = 836

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 280/912 (30%), Positives = 428/912 (46%), Gaps = 127/912 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG    FD +KI  AI K+F +++           DI +      +  L Q   + 
Sbjct: 6   ITKRNGQQVPFDSTKIQMAIRKSFASLQ----------ADISEEDLASILDLLEQKIINR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD+VE SLM+ G+ ++ ++Y+LYR+ R+  R  ++           L++M  
Sbjct: 56  EKLDVEFIQDKVEQSLMEKGYFEVAKKYILYRQVRTIQRQERN---------ELLELMAI 106

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS-ESDLETALIFSSRTL 209
           +G      S             LQ     + L    +   + ++ + D  + L+ S+  L
Sbjct: 107 EGLEEHLLS-------------LQKTYPNLSLKRLKERYENTITGQEDRLSLLVRSAAEL 153

Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             KE P + KV  R L  +L         K  Q      +   Y E      +EG+    
Sbjct: 154 TSKEEPTWEKVAGRLLAFQL-------SLKLKQAEDSLGIHSFY-EKLQYLTQEGLYGDY 205

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327
           + +     ++    + + +  D+ F Y GL +L +RY +H     I E PQ  ++ +A+ 
Sbjct: 206 ILKGYHQEEIEEAYHFIDFSHDYRFTYAGLDLLANRYLIHSRQHVILESPQEMYLGIALH 265

Query: 328 LALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LALKE + + +   +FY++L+      +TPTL N+   + QLSSCF+ TVPD L GI+ +
Sbjct: 266 LALKEKKYRMEWVKKFYDMLARHEVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYQS 325

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDTAVAV+Q G R+G
Sbjct: 326 IANFADVSKFGGGMGMYLGKVRSRGGMIRGFEGASGGVIRWIRVINDTAVAVDQLGVRQG 385

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K+V +  N  W    P
Sbjct: 386 AVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKKVKEDINQDWYFMDP 445

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            ++       L D YG+E+E  YE   +          R +S   + R +L  + ETG P
Sbjct: 446 HDIFVVKGYHLEDSYGEEWERKYEECIQD----HRISKRVMSIKEVVRLILKSIVETGTP 501

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +  ++D  N  +P +H G+++ SNLCTEI  N S                         +
Sbjct: 502 FAFYRDAVNRANPNKHAGIIYCSNLCTEIAQNMSEACIESRTIETRDGETVIVQTQKPGD 561

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   D   L     TAVR LDNVID+N + +  AK +N  +RAI
Sbjct: 562 FVVCNLASLCLGNINVN---DIADLERVTSTAVRALDNVIDLNFYPLVNAKITNQNYRAI 618

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L    I + S E ++  D   E I++  I AS ELA+ERG+YS FKGS W
Sbjct: 619 GLGVSGYHHMLAKNRIQWESEEHLQFVDRVFEDIAYMTIRASHELAKERGSYSLFKGSDW 678

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + G              D   + +     W +L+K ++  GMRN+  MAIAPT++ + + 
Sbjct: 679 ENG--------------DYFRLRKYESERWLKLQKDIQKGGMRNAYVMAIAPTSSTSILI 724

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  +DP     +++                EL     W                    
Sbjct: 725 GTTAGLDPVLNRFFMEEKKGTMLPRTAP----ELSLETYW-------------------- 760

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLM 895
                   + +A  ID  + I +   RQ+ IDQ+QS NL+  +E    +L  +   A+  
Sbjct: 761 -------YYKSAHTIDQNYSIRANGIRQRHIDQSQSFNLWITNEYKMSQLLKLLTLAYDC 813

Query: 896 GLKTTYYLRSRS 907
           G+KT YY RS++
Sbjct: 814 GVKTIYYTRSKA 825


>gi|320527967|ref|ZP_08029133.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
 gi|320131593|gb|EFW24157.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
          Length = 842

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 281/914 (30%), Positives = 430/914 (47%), Gaps = 126/914 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KRNG V  +D +KI  AI K+F++V      +    Q  + +L EQ   +     + 
Sbjct: 8   RIVKRNGQVVPYDGTKIVLAIEKSFLSV------KESVDQAYLSDLLEQIEAQFDGRQE- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V +E+IQD VE  LM++  + + + Y+LYRE+R+ +R  +              +++
Sbjct: 61  ---VDVEEIQDTVEKILMKNEKYNVAKSYILYREKRTQMRNDRLELVKLIGDEELENVLV 117

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           D                        D   K +  +      +G S  D  T L  SS  L
Sbjct: 118 DIQKTYP------------------DYDLKRLYEKFSTMSKEGQSLKDRITLLTRSSAEL 159

Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             KE PN+ ++  R L   +  ++  T  K    + + ++  +        IE+G+    
Sbjct: 160 TTKEEPNWERIAGRLLSYSIASDLRATEEKLGLTSFYQKISYM--------IEQGLYGAY 211

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327
           + E+    ++  +A  +   R+  F Y GL +L  RY +  +   + E PQ  ++ +AM 
Sbjct: 212 ILENYSHKEVDEIATLIDNTRNNLFTYSGLDLLSQRYLIRSHQHVLLESPQEMYIGIAMH 271

Query: 328 LALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LA+KET        +FY+++S      +TPT  N+   + QLSSCF+ TVPD L GI+ +
Sbjct: 272 LAMKETNNRIGWVKKFYDMMSLHKVTMATPTQANARKPYHQLSSCFIDTVPDSLDGIYHS 331

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDTAVAV+Q G R G
Sbjct: 332 ISNFADVSKFGGGMGMYLGKVRSRGGSIRGFEGASGGVIRWIRVINDTAVAVDQLGVRAG 391

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V +  N  W L  P
Sbjct: 392 AVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVKEDMNQDWYLLDP 451

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            +V       L D YG+E+E  Y          +  +  K     + R +L  + ETG P
Sbjct: 452 HDVLMVKGYCLEDFYGEEWEKRYWECVHDNRISKRVLVLK----EVVRLILKSMVETGTP 507

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----------------------EE 596
           +  ++D  N  +P +H G+++SSNLCTEI  N S                         +
Sbjct: 508 FAFYRDAVNRANPNKHKGMIYSSNLCTEIAQNMSEVKQISRVIKTEDGDEVIVTTTKPGD 567

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      N  D  ++     T VR LDNVID+N + +  A+ +N  +R+I
Sbjct: 568 YVVCNLASLCLGNI---NVKDPKEIEEVTATVVRALDNVIDLNFYPLPNAQVTNRKYRSI 624

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L   HI + S E ++  D+  E I++ +I AS  LA+ERG+Y  F+GS W
Sbjct: 625 GLGVSGYHHMLAKNHIMWESEEHLKFVDKVFENIAYASIKASNTLAKERGSYQYFEGSEW 684

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + G +                        W ELK+ V   GMRN+  +A+APT++ + + 
Sbjct: 685 ESGAY--------------FDARGYDSARWKELKEEVHATGMRNAYVLAVAPTSSTSILI 730

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--GNI 834
           G S  +DP                 +N F + E K                 GSI     
Sbjct: 731 GTSAGLDPV----------------MNRFFLEEKK-----------------GSILPRTA 757

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAW 893
             +  D    + TA  ID  W +++A  RQ+ IDQAQS NL++       +L  +Y  A+
Sbjct: 758 PELSADTYWYYKTAHTIDQTWSVKAAGIRQRHIDQAQSFNLWITNDYKMSQLLQLYVLAY 817

Query: 894 LMGLKTTYYLRSRS 907
             G+KT YY RS++
Sbjct: 818 DCGVKTIYYTRSKA 831


>gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens]
          Length = 570

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 222/581 (38%), Positives = 341/581 (58%), Gaps = 19/581 (3%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 3   DDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTAR 62

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  
Sbjct: 63  YVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVET 122

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  ++    E
Sbjct: 123 NQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAIIGSQTE 177

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NN 614
           TG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    +
Sbjct: 178 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH 237

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+
Sbjct: 238 TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPF 297

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +      
Sbjct: 298 ESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP---- 353

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  
Sbjct: 354 ------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRV 407

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI   
Sbjct: 408 LSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 467

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  +
Sbjct: 468 TVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQ 527

Query: 914 STL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            TL K        V   +     ++  +  S  +  EC +C
Sbjct: 528 FTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 568


>gi|157371508|ref|YP_001479497.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323272|gb|ABV42369.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 762

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 201/806 (24%), Positives = 333/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GQDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRQ----KRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ A +     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELATLAVRALDALLDYQDYPIKAAHRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +V             W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDV----ICQEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R   D  ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKNDYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQ+ S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYD-PTRFPGGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  L    G
Sbjct: 725 GVKTLYYQNTRDGADDIQEDLLPAKG 750


>gi|238895769|ref|YP_002920505.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330000611|ref|ZP_08303754.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|238548087|dbj|BAH64438.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328537953|gb|EGF64132.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 761

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 211/801 (26%), Positives = 335/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEKGKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDTIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGIVSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +     LW      ++  +DG +           
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYHNTRDGAEDAQDDL 745


>gi|152971180|ref|YP_001336289.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956029|gb|ABR78059.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 761

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 211/801 (26%), Positives = 335/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEKGKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGIVSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +     LW      ++  +DG +           
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYHNTRDGAEDAQDDL 745


>gi|191166528|ref|ZP_03028358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|193062323|ref|ZP_03043418.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|193068151|ref|ZP_03049115.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194427206|ref|ZP_03059757.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209919686|ref|YP_002293770.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|218554797|ref|YP_002387710.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|256017604|ref|ZP_05431469.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|260844830|ref|YP_003222608.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856284|ref|YP_003230175.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868964|ref|YP_003235366.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|307311199|ref|ZP_07590843.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|309793114|ref|ZP_07687542.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|332278614|ref|ZP_08391027.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|190903488|gb|EDV63207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|192931989|gb|EDV84588.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|192958430|gb|EDV88869.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194414827|gb|EDX31098.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209912945|dbj|BAG78019.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|218361565|emb|CAQ99156.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI1]
 gi|257754933|dbj|BAI26435.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759977|dbj|BAI31474.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765320|dbj|BAI36815.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|306908705|gb|EFN39202.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|308123400|gb|EFO60662.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|315061534|gb|ADT75861.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli W]
 gi|320199829|gb|EFW74418.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323156511|gb|EFZ42665.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
 gi|323161695|gb|EFZ47578.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
 gi|323176839|gb|EFZ62429.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
 gi|323377885|gb|ADX50153.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
 gi|324020906|gb|EGB90125.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
 gi|324117883|gb|EGC11782.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|332100966|gb|EGJ04312.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 334/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|161502571|ref|YP_001569683.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863918|gb|ABX20541.1| hypothetical protein SARI_00615 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 205/800 (25%), Positives = 330/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALYR-HVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + +GV PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEQGACPWFNETTYAKGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIANEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|323171913|gb|EFZ57557.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 334/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|188533367|ref|YP_001907164.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           tasmaniensis Et1/99]
 gi|188028409|emb|CAO96270.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 206/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERIDLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++     ++ P+                R 
Sbjct: 61  TIIKSAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRTTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFANQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N   +L W+ L++ VKT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICNTPLQLDWEGLRESVKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L      A+  
Sbjct: 681 ---------------LVGIMQKFVDQAISSNTNYD-PTRFANGRVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDSQDDL 745


>gi|205353393|ref|YP_002227194.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273174|emb|CAR38136.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628484|gb|EGE34827.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 205/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTDEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
            +   +E+ +    ++     QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 665 AYELLWEMPNNEGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDAQDDL 745


>gi|146312443|ref|YP_001177517.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319319|gb|ABP61466.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Enterobacter sp. 638]
          Length = 761

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 202/800 (25%), Positives = 330/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++                      ++  + 
Sbjct: 61  TIIKAAADLISREAPDYQYMAARLAIFHLRKKAYGQFEPPALL-----------DHVTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDAHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLEYVKRFYDAVSIFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GQDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLYDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +       +L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LAELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGHVSIKASKDGVLRQVVPDY-----ELLKDSYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  +
Sbjct: 726 VKTLYYHNTRDGAEDAQDDM 745


>gi|206576450|ref|YP_002237362.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288934290|ref|YP_003438349.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|290508493|ref|ZP_06547864.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
 gi|206565508|gb|ACI07284.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288889019|gb|ADC57337.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
 gi|289777887|gb|EFD85884.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
          Length = 761

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 211/801 (26%), Positives = 336/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEKGKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++ +    W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGIVSESLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +     LW      ++  +DG +           
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYHNTRDGAEDAQDDL 745


>gi|320175006|gb|EFW50121.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
          Length = 761

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLIMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|156933157|ref|YP_001437073.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531411|gb|ABU76237.1| hypothetical protein ESA_00967 [Cronobacter sakazakii ATCC BAA-894]
          Length = 761

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/800 (25%), Positives = 336/800 (42%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L +   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTRYEQD----ESIRKQRIKASELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIASEPLHYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         ++      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPDY-----EQLKDQYELLWEMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+ +G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|331673747|ref|ZP_08374510.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331069020|gb|EGI40412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 761

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQGDL 745


>gi|258648773|ref|ZP_05736242.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851103|gb|EEX70972.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
          Length = 844

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/920 (29%), Positives = 425/920 (46%), Gaps = 118/920 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G + ++  SKI  A+  AF ++     + ++             + + L+     
Sbjct: 5   IIKRDGTIENYKASKIGDAVSAAFASIGEVCPAEALET-------LIAAIEKELEGIAEN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM++G ++  R ++LYREER+  RA  +  +    +    +++ D
Sbjct: 58  RSVRVEQIQDNVEIELMRAGFYRQARRFILYREERAKDRAYINEIEQTVGLEGMHRLLKD 117

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                              C     + SK             ++  +   AL  ++   I
Sbjct: 118 VQRDYP-----------HLCKSFGKLVSKYHAFHK-----PSMTAEEGLHALTRAAVECI 161

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V  R    +             +K    ++Q LY +       EG     +
Sbjct: 162 TAEEPDWEFVAGRLYSFQ-------NDLNIRRKMEGLQLQSLYDK-LSYLTTEGYYGAYI 213

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328
            ES    ++      L+ ERD    Y GL +L  RY +      ++E PQ  ++ +A+ L
Sbjct: 214 LESYTKAEIDLAETFLQPERDRLLTYSGLDLLLRRYTVRNFVHEQLETPQEMYLGIALHL 273

Query: 329 ALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A++ET+     V  FY++LS      +TPTL N+   H Q+SSCF+ TV D L GI+ ++
Sbjct: 274 AMRETQNRMDHVRAFYDMLSKQQVSMATPTLANARKPHHQMSSCFIDTVDDSLEGIYRSI 333

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
              A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R GA
Sbjct: 334 ANFANVSKFGGGMGLYFGKVRANGSDIRGYKGAAGGVIRWIKLANDTAVAVDQLGVRSGA 393

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPD 505
           V  YL+ WH D+ +FL LR N GDDR + HD+  A   PDLF K+V +     W L  P 
Sbjct: 394 VACYLDVWHKDILDFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKKVREGLDQSWYLMCPH 453

Query: 506 EV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           E+       L D YG E+E  Y +    A   + +V  K     L R +L    ETG P+
Sbjct: 454 EIQTIKGYALEDSYGDEWEQRYNDCVNDARITKTEVLLK----DLIRLILKSAIETGTPF 509

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------------EE 596
             F+D  N  +P +H G+++SSNLC EI  N S                          +
Sbjct: 510 AFFRDHVNRMNPNKHKGIIYSSNLCVEIAQNMSPIQSVQIETMKTPEGDDIIVEKTKAGD 569

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ +      N  D  ++   +  AVR LDNVID+N + +E A+ +N  +R I
Sbjct: 570 FVVCNLASLVVSKI---NFDDEAEVKRVVYAAVRALDNVIDLNYYPLEYARVTNRRYRPI 626

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG+   L    I + S   +E AD+ ME I+++AI AS+ELA+E+G Y  F+GS W
Sbjct: 627 GLGIMGYHHYLAQQGIVWESEAHLEAADKLMEKINYYAIRASMELAKEKGHYEYFEGSDW 686

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D  +  +     W  L   V   G+RN   +AIAPT++ + I 
Sbjct: 687 QTG--------------DYFSRRQYESADWQALAADVAQAGVRNGYLLAIAPTSSTSIIA 732

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +   DP     +++         V   L                              
Sbjct: 733 GTTAGTDPVMNRYFLEEKKGATIARVAPSL------------------------------ 762

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
             D    ++ +A  ID  W I +A  RQ+ +DQAQS+NLY+    + +++  +Y +AW  
Sbjct: 763 -SDKTWWLYKSAHTIDQTWSIRAAGVRQRHVDQAQSVNLYITNDFTLRQVLNLYIKAWEC 821

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY+RS+S    E  +
Sbjct: 822 GMKTIYYVRSKSLEITECES 841


>gi|170767383|ref|ZP_02901836.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170123717|gb|EDS92648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 761

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 208/797 (26%), Positives = 331/797 (41%), Gaps = 81/797 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEEI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + +K++  G    V             LW       +  +DG +               
Sbjct: 641 YVSIKASKDGILRQVVPDYEPLHDAYELLW------KMPGNDGYLQ-------------- 680

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKT 899
                            QK+IDQ+ S N   D    PSGK    +L      A+  G+KT
Sbjct: 681 ------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT 728

Query: 900 TYYLRSRSATSVEKSTL 916
            YY  +R      +  L
Sbjct: 729 LYYQNTRDGAEDAQDDL 745


>gi|16130169|ref|NP_416737.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74312754|ref|YP_311173.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|89109051|ref|AP_002831.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|157161717|ref|YP_001459035.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|170019453|ref|YP_001724407.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|170081852|ref|YP_001731172.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194433299|ref|ZP_03065579.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194436240|ref|ZP_03068342.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238901408|ref|YP_002927204.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|253772843|ref|YP_003035674.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162245|ref|YP_003045353.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|256022084|ref|ZP_05435949.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|297516088|ref|ZP_06934474.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
 gi|300931420|ref|ZP_07146749.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300948932|ref|ZP_07162993.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300958920|ref|ZP_07171023.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|301024216|ref|ZP_07187915.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|301647676|ref|ZP_07247470.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307138892|ref|ZP_07498248.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|312973511|ref|ZP_07787683.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|331642863|ref|ZP_08343998.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|2507304|sp|P00452|RIR1_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|2914218|pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914220|pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914222|pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914311|pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914313|pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914315|pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|284793830|pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793831|pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793832|pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|1799581|dbj|BAA16053.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|2367133|gb|AAC75294.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|46275274|emb|CAA30056.2| ribonucleotide reductase [Escherichia coli K-12]
 gi|73856231|gb|AAZ88938.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           sonnei Ss046]
 gi|157067397|gb|ABV06652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|169754381|gb|ACA77080.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|169889687|gb|ACB03394.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194418393|gb|EDX34482.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194424968|gb|EDX40953.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238863474|gb|ACR65472.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|242377868|emb|CAQ32636.1| nrdA, subunit of B1 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323887|gb|ACT28489.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974146|gb|ACT39817.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978313|gb|ACT43983.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|260448674|gb|ACX39096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
 gi|299880522|gb|EFI88733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|300314423|gb|EFJ64207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300451586|gb|EFK15206.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300460790|gb|EFK24283.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|301074206|gb|EFK89012.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|309702544|emb|CBJ01871.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli ETEC H10407]
 gi|310332106|gb|EFP99341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|315136866|dbj|BAJ44025.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
 gi|315615495|gb|EFU96127.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|320178794|gb|EFW53757.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|323168603|gb|EFZ54283.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
 gi|323936631|gb|EGB32917.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941072|gb|EGB37259.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323961540|gb|EGB57148.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973063|gb|EGB68257.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|331039661|gb|EGI11881.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332093863|gb|EGI98917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 5216-82]
 gi|332096124|gb|EGJ01127.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
 gi|332344014|gb|AEE57348.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 761

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|16761203|ref|NP_456820.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141102|ref|NP_804444.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213161594|ref|ZP_03347304.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424146|ref|ZP_03357024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213612728|ref|ZP_03370554.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213646445|ref|ZP_03376498.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|25285839|pir||AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503502|emb|CAD07509.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136728|gb|AAO68293.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/800 (25%), Positives = 331/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V   L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|300903616|ref|ZP_07121534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301303306|ref|ZP_07209431.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300404352|gb|EFJ87890.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300841480|gb|EFK69240.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315255169|gb|EFU35137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|168749637|ref|ZP_02774659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168754981|ref|ZP_02779988.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168767854|ref|ZP_02792861.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168773048|ref|ZP_02798055.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168780083|ref|ZP_02805090.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168798398|ref|ZP_02823405.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195935608|ref|ZP_03080990.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208806525|ref|ZP_03248862.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814448|ref|ZP_03255777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820413|ref|ZP_03260733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398582|ref|YP_002271640.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|254794125|ref|YP_003078962.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|187771171|gb|EDU35015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016054|gb|EDU54176.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002029|gb|EDU71015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357729|gb|EDU76148.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362988|gb|EDU81407.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189378969|gb|EDU97385.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726326|gb|EDZ75927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208735725|gb|EDZ84412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740536|gb|EDZ88218.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159982|gb|ACI37415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209765532|gb|ACI81078.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765536|gb|ACI81080.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|254593525|gb|ACT72886.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|326339581|gb|EGD63392.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKHFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|187731504|ref|YP_001881064.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|187428496|gb|ACD07770.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
 gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
          Length = 798

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 314/797 (39%), Positives = 429/797 (53%), Gaps = 114/797 (14%)

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLL 225
            +A  GL  +  +   +E         S  DL T+LI  +   I+ + PN++ V AR  L
Sbjct: 41  HKATEGLTGLDKQEFETEALHCN----STQDLFTSLIKMAVDRIDVDAPNWSFVAARLFL 96

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV-KARLLHESMMDFDLVYLAND 284
           E L ++V       P +                Y+E G  K R++      FDL  L + 
Sbjct: 97  EDLYQKVSGFSGYLPLRV---------------YLERGESKGRIVRGFKEKFDLELLDSA 141

Query: 285 LKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           LK ERD+ F YLG++ LYDRY L       IE+PQ  FM +AM LA  E++   RA+EFY
Sbjct: 142 LKPERDWQFNYLGIKTLYDRYLLKDESNHPIELPQHMFMAIAMFLAQNESDPNARALEFY 201

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +LS F  MC+TPTL N+ T + QLSSC++ + PD++ GIF + ++ A+L+KY GG+G D
Sbjct: 202 GVLSRFELMCATPTLANARTPNHQLSSCYIGSTPDNIEGIFDSYKDMALLSKYGGGIGWD 261

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ VR LG+ I G    S GVIPFLK+AND AVAV+Q G RKGA+  YLE WH+D+ EF+
Sbjct: 262 FSQVRCLGSFIDGHKSASAGVIPFLKIANDVAVAVDQLGTRKGAIAVYLEIWHMDILEFI 321

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DLRKN+GD+RRR HD+  A WI DLFM+RV  +  WTLF P    DL   +G EFE  Y 
Sbjct: 322 DLRKNSGDERRRAHDLFPALWICDLFMQRVEADQEWTLFDPYRCQDLTQCFGAEFEAKYL 381

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YE+ +      V  +I A  LW+K+LT  FETG P++ FKD  N  +P  HVG++ SSN
Sbjct: 382 AYEQDS----HMVKHRIKARDLWKKILTNYFETGLPFLGFKDNANRANPNGHVGMIRSSN 437

Query: 584 LCTEITLNSSSEETA------------------VCNLGSI-------------------- 605
           LCTEI  N+SS                      VC    I                    
Sbjct: 438 LCTEIYQNTSSSHYKMQIDFTDGSREFFEELEEVCTDTGITKRANKLSSNDSLGGKKIFM 497

Query: 606 -------------NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                        NL +   +       L   +  AVR+LDNVID+N + I KAK++N  
Sbjct: 498 ASKVAEEGMVAVCNLASLNLSKINSQQDLERVVPIAVRMLDNVIDLNFYPISKAKETNLK 557

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            RAIGLG+MG    L    I + S E     D  +E +S+ AI AS +LA ERG+Y+ F+
Sbjct: 558 SRAIGLGVMGEAQMLAEARIKWGSAEHALKMDFLLEKMSYEAIKASSQLAIERGSYAYFE 617

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W QG+FPID I    +   E++ ++  R  W  LKK+VK  G+RN   MAIAPT++I
Sbjct: 618 GSAWSQGIFPIDYIK---QEVKEISPHKP-RCDWKSLKKKVKEQGLRNGYLMAIAPTSSI 673

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G +Q+I+P YQ  +++ N+SG   VV   L  E                       
Sbjct: 674 SILVGTTQTIEPIYQKKWLEENLSGLIPVVVPSLSLE----------------------- 710

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYR 890
                       + +A++ID   +I+ A+ RQKWIDQ QSLNL+    + SGK L  IY 
Sbjct: 711 --------TWPFYTSAYDIDAKDMIKLAAVRQKWIDQGQSLNLFLRPKKASGKLLHEIYY 762

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW +GLK+TYYLR++S
Sbjct: 763 LAWKLGLKSTYYLRTQS 779


>gi|188492275|ref|ZP_02999545.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|188487474|gb|EDU62577.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDDSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|15802781|ref|NP_288808.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832371|ref|NP_311144.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|26248622|ref|NP_754662.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|91211527|ref|YP_541513.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|110642442|ref|YP_670172.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|117624428|ref|YP_853341.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|157156706|ref|YP_001463583.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|168761334|ref|ZP_02786341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168787140|ref|ZP_02812147.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|170682262|ref|YP_001744430.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|191170225|ref|ZP_03031779.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|217327968|ref|ZP_03444051.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218559151|ref|YP_002392064.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|218690397|ref|YP_002398609.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218695840|ref|YP_002403507.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|218700705|ref|YP_002408334.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218705764|ref|YP_002413283.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|227887292|ref|ZP_04005097.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|237704710|ref|ZP_04535191.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|261223313|ref|ZP_05937594.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259137|ref|ZP_05951670.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291283478|ref|YP_003500296.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|293405701|ref|ZP_06649693.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|293410598|ref|ZP_06654174.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|293446577|ref|ZP_06662999.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|298381382|ref|ZP_06990981.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300818166|ref|ZP_07098378.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300822683|ref|ZP_07102821.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300897698|ref|ZP_07116096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300918604|ref|ZP_07135192.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300936791|ref|ZP_07151684.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300981253|ref|ZP_07175430.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300983267|ref|ZP_07176506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301022394|ref|ZP_07186278.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|301048986|ref|ZP_07195973.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|306814653|ref|ZP_07448815.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|312967535|ref|ZP_07781750.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|331647889|ref|ZP_08348981.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331658315|ref|ZP_08359277.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331663741|ref|ZP_08364651.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331678185|ref|ZP_08378860.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331683910|ref|ZP_08384506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|12516569|gb|AAG57363.1|AE005455_4 ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli O157:H7 str. EDL933]
 gi|26109027|gb|AAN81230.1|AE016763_189 Ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli CFT073]
 gi|13362586|dbj|BAB36540.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|91073101|gb|ABE07982.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli UTI89]
 gi|110344034|gb|ABG70271.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 536]
 gi|115513552|gb|ABJ01627.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli APEC O1]
 gi|157078736|gb|ABV18444.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
 gi|170519980|gb|ACB18158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
 gi|189368234|gb|EDU86650.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372942|gb|EDU91358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|190909741|gb|EDV69326.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|209765528|gb|ACI81076.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765530|gb|ACI81077.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765534|gb|ACI81079.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|217320335|gb|EEC28760.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218352572|emb|CAU98351.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli 55989]
 gi|218365920|emb|CAR03662.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli S88]
 gi|218370691|emb|CAR18502.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI39]
 gi|218427961|emb|CAR08881.2| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ED1a]
 gi|218432861|emb|CAR13755.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli UMN026]
 gi|222033995|emb|CAP76736.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|226901076|gb|EEH87335.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|227835642|gb|EEJ46108.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|281179325|dbj|BAI55655.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE15]
 gi|284922225|emb|CBG35307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 042]
 gi|290763351|gb|ADD57312.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323407|gb|EFE62835.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|291427909|gb|EFF00936.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|291471066|gb|EFF13550.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|294492897|gb|ADE91653.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|298278824|gb|EFI20338.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300299178|gb|EFJ55563.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300307617|gb|EFJ62137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300358576|gb|EFJ74446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300397544|gb|EFJ81082.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300408601|gb|EFJ92139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|300414256|gb|EFJ97566.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300458121|gb|EFK21614.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300524883|gb|EFK45952.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300529310|gb|EFK50372.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|305852047|gb|EFM52499.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|307554300|gb|ADN47075.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ABU 83972]
 gi|312287732|gb|EFR15637.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|312946855|gb|ADR27682.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285848|gb|EFU45288.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
 gi|315292182|gb|EFU51534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
 gi|315298060|gb|EFU57329.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
 gi|320192145|gb|EFW66790.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320196103|gb|EFW70727.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli WV_060327]
 gi|320641060|gb|EFX10539.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
 gi|320646449|gb|EFX15368.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651546|gb|EFX19926.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320657298|gb|EFX25100.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663125|gb|EFX30438.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667817|gb|EFX34725.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323184147|gb|EFZ69524.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
 gi|323188038|gb|EFZ73333.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
 gi|323945043|gb|EGB41108.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323956003|gb|EGB51756.1| ribonucleotide reductase [Escherichia coli H263]
 gi|323967676|gb|EGB63088.1| ribonucleotide reductase [Escherichia coli M863]
 gi|323977568|gb|EGB72654.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|324006610|gb|EGB75829.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
 gi|324013120|gb|EGB82339.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
 gi|325496726|gb|EGC94585.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
 gi|326344043|gb|EGD67804.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|327252503|gb|EGE64162.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
 gi|330912065|gb|EGH40575.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit
           [Escherichia coli AA86]
 gi|331043613|gb|EGI15751.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331056563|gb|EGI28572.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331059540|gb|EGI31517.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331074645|gb|EGI45965.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331078862|gb|EGI50064.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|261346129|ref|ZP_05973773.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282565782|gb|EFB71317.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 763

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 209/810 (25%), Positives = 334/810 (41%), Gaps = 81/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL +VS  +V   +    YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGHKERIDLDKIHKVIAWAAEGLNNVSVSLVELRSQIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI    P+Y  + AR  +  LR++     ++ P+  TH            R 
Sbjct: 61  TMIKAAADLITGDTPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYTH----------VKRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E   + D   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLEDYSEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +     EFE  Y  YE+     E      + AV L+  M+  
Sbjct: 350 NQDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD----ENIRKSSVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  A+K +   R +G+G++ +
Sbjct: 466 AFNLGAINS-----LDELEELAVLAVRALDALLDYQDYPIPAAQKGSMGRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRELDKLTD----EPLHYDWETLRKEIQQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V     N       LW       +  ++G +           
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDYENLKGAYELLW------QMPSNNGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMNQLLKDLLLAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           G+KT YY  +R      +  L+ V    ++
Sbjct: 725 GVKTLYYHNTRDGAEDVQGDLEEVVESADS 754


>gi|24113614|ref|NP_708124.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30063668|ref|NP_837839.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|24052671|gb|AAN43831.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 301]
 gi|30041923|gb|AAP17649.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 2457T]
 gi|281601679|gb|ADA74663.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313651059|gb|EFS15458.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332754882|gb|EGJ85247.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|332755285|gb|EGJ85649.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332756581|gb|EGJ86932.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332766055|gb|EGJ96265.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333001381|gb|EGK20949.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
 gi|333002008|gb|EGK21574.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
 gi|333002602|gb|EGK22162.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333016363|gb|EGK35694.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
 gi|333016744|gb|EGK36072.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 761

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|2981919|pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981921|pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981923|pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC +I         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|110806204|ref|YP_689724.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110615752|gb|ABF04419.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 5 str. 8401]
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDVSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|323952029|gb|EGB47903.1| ribonucleotide reductase [Escherichia coli H252]
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 205/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|82777643|ref|YP_403992.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae Sd197]
 gi|309785073|ref|ZP_07679706.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81241791|gb|ABB62501.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           dysenteriae Sd197]
 gi|308927443|gb|EFP72917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 334/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V +L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPELYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|324112771|gb|EGC06747.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|308187585|ref|YP_003931716.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058095|gb|ADO10267.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 761

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/801 (25%), Positives = 333/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLYDQVV-KM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDKSIRQ----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K+L      A+  
Sbjct: 681 ---------------LVGLMQKFIDQAISSNTNYD-PSRFANGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDAQDDL 745


>gi|333030472|ref|ZP_08458533.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741069|gb|EGJ71551.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 835

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/921 (28%), Positives = 422/921 (45%), Gaps = 123/921 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRN  V  F   KI RAI+ AF +++   +   + +              +  + +
Sbjct: 1   MKIIKRNRQVEDFTYDKIKRAIVAAFHSLQRSVSEHELEI----------ICDLISVNLE 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  V +E +QD VE  LM+ GH+K  + Y+LYR+ R+  R   +  +        ++++
Sbjct: 51  DSDYVDVETVQDLVETVLMKRGHYKEAKAYILYRDRRTACREMINQFRQTITDDDTIELL 110

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D           ++    +    LQ + SK             +        L+ ++  
Sbjct: 111 QD-----------IQNEFGQKQYDLQFLYSKYRSFYKADGNPLKI--------LMKAAVE 151

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI  + PN+  + +R L  +L +E+     +    + + +M  L         ++ +   
Sbjct: 152 LITPDAPNWEFIASRLLAVELEKEIQQAERELGLTSLYKKMNYL--------TQQNLYGS 203

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + ++    ++  L+  +K  R+    Y  L +L  RY +   +   +E PQ  FM +AM
Sbjct: 204 YMLKNYSQAEVEELSKYMKTSRNQLLTYSSLHLLSKRYLIQNYSHHLLERPQEMFMGIAM 263

Query: 327 GLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E EK+   A   Y++LS+     +TPT+ N+     QLSSCF   +PD L GI+ 
Sbjct: 264 HLAIPEGEKKVCWAKRIYDVLSTLKVTMATPTMSNARKPLSQLSSCFEDVMPDSLVGIYR 323

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            L   A ++K+ GG+G     VR +G+ I G  G + G++ ++K+ NDTA+AV+Q G R+
Sbjct: 324 TLTNFAQVSKFGGGMGIYIGKVRAVGSDIRGFKGVAGGILKWVKLCNDTAIAVDQLGVRQ 383

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           G+V  YL+ WH D+ EFL +R N GDDR + HD+     IPD F ++V  N    W L  
Sbjct: 384 GSVAIYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGICIPDYFWEQVKTNMEGDWYLMC 443

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+      +L D YG E++  Y               R I    + R ++    ETG 
Sbjct: 444 PHEIMTMKGYNLEDTYGDEWKQKYLECVND----HRIPKRIIPIKEMVRLIIKSAVETGT 499

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+I  +D  N  +P +H GV++ SNLCTEI  N S                       + 
Sbjct: 500 PFIFNRDLVNNLNPNKHQGVIYCSNLCTEIAQNQSAIQDVRRTVRLENGDEIIVEETKAG 559

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L         D ++L   I T VR LDNVID+N + I  A+ +N   R 
Sbjct: 560 DFVVCNLASLVLGNIDVE---DSEELQGIIHTIVRALDNVIDLNFYPIPYAQITNQKMRP 616

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L    + + S E +   D+  E I+++ I AS +LA+E+G YS F  S 
Sbjct: 617 IGLGTSGYHHLLAQKGLRWESDEHLAYMDKVYEKINYYTIEASNQLAKEKGVYSFFDKSD 676

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G              D   +   +   W  L   V   GMRN   +AIAPT++ + I
Sbjct: 677 WQTG--------------DYFKLRGYASEEWKHLATNVAKNGMRNGYLLAIAPTSSTSII 722

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +   DP     +++         +   +  EL     W                   
Sbjct: 723 AGTTAGTDPVMNRYFLEEKKG----SIVPRVAPELSDSTFW------------------- 759

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                   ++ TA +ID  W+I++A  RQ+ +DQ+QS+NLY   E + +KL  +Y +AW 
Sbjct: 760 --------LYKTAHQIDQSWVIDAAGVRQRHLDQSQSVNLYITQEFTFRKLLNLYLRAWE 811

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+KT YY+RS+S    E  T
Sbjct: 812 KGVKTLYYVRSQSLEVEECET 832


>gi|271499643|ref|YP_003332668.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech586]
 gi|270343198|gb|ACZ75963.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech586]
          Length = 762

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 207/801 (25%), Positives = 335/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E   + +  ++   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDRHLLEDYTEEEFAHMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSSYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YER     +    +++ A  L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFNNQDEFERLYVKYERDDSIRK----KQLKAAELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +       +L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAISS-----LHELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS +LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHQTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +       +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKRDLDN----ICSEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      D+  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKNAYELLW------DMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK++DQA S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGLMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQDDL 745


>gi|307129980|ref|YP_003881996.1| Ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Dickeya dadantii 3937]
 gi|306527509|gb|ADM97439.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Dickeya dadantii 3937]
          Length = 762

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 206/801 (25%), Positives = 334/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P+            ++  + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPKLH----------DHVIKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ A  L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFTNQDEFERLYVKYEQDDSIRK----KQLKAAELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +       +L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAISS-----LHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKRDL----DSICSEPLHYDWEALRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      D+  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------DMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK++DQA S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGLMQKFVDQAISSNTNYDPARFPSGKVPMTQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQDDL 745


>gi|304398197|ref|ZP_07380071.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304354063|gb|EFM18436.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 761

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/801 (25%), Positives = 333/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY +   + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLYDQVV-KM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   +   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQD----QSIRKQRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDQYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K+L      A+  
Sbjct: 681 ---------------LVGLMQKFIDQAISSNTNYD-PSRFTNGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDAQDDL 745


>gi|2914234|pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914236|pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914238|pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
          Length = 761

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSAS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|331653668|ref|ZP_08354669.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331048517|gb|EGI20593.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 761

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|2981928|pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981930|pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981932|pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC +I         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|293415527|ref|ZP_06658170.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
 gi|291433175|gb|EFF06154.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
          Length = 761

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +  G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|237747537|ref|ZP_04578017.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
 gi|229378899|gb|EEO28990.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
          Length = 761

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 206/801 (25%), Positives = 328/801 (40%), Gaps = 79/801 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRKERIDLDKIHRVIDWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++               E   LY ++  R +  G
Sbjct: 65  SAADLISGETPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVKRLVGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDSHLLEDYSPAEFAEMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  ++ +      FY  +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSKYPKQTRLDYIRRFYEAVSTFRVSLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINVTASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G D  R   ++    +  L  KR+      
Sbjct: 294 QGGVRGGAATVYYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNRLMYKRLIAGGDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE      +    + + AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQDEFERLYSLYEADGSIRK----KTVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + +  AK      R +G+G++ F   L
Sbjct: 470 GAIDS-----LDELEELATLAVRALDALLDYQDYPVLAAKNGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +GV P+D+  
Sbjct: 525 AKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFGETSYAKGVLPVDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDLDAF----CNEPLHYDWEALRENIRQYGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++ +K++  G    V         ++      ++ DL  ++G +                
Sbjct: 641 HISIKASKDGILRQVVPDY-----EQLKDAYELLWDLPDNNGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK++DQA S N   D    PSGK    +L      A+ +G+KT 
Sbjct: 681 -----------LVGVMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLMAYKLGVKTL 729

Query: 901 YYLRSRSATSVEKSTLKGVDG 921
           YY  +R      +  L+    
Sbjct: 730 YYQNTRDGAEDSQEDLQASKE 750


>gi|218548312|ref|YP_002382103.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355853|emb|CAQ88466.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 761

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEQLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|2981911|pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981913|pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981915|pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC  I         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|82544521|ref|YP_408468.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81245932|gb|ABB66640.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           boydii Sb227]
 gi|320184865|gb|EFW59653.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
 gi|332094119|gb|EGI99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 761

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+G    F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|157144814|ref|YP_001452133.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157082019|gb|ABV11697.1| hypothetical protein CKO_00541 [Citrobacter koseri ATCC BAA-895]
          Length = 761

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 209/800 (26%), Positives = 337/800 (42%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGEF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAINS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIANEALHYNWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V       LK R      ++ ++  +DG +            
Sbjct: 637 PPRGHVSIKASKDGVLRQVVPD-YEGLKDR----YELLWEMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQA S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQAISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYHNTRDGAEDAQDDL 745


>gi|251790601|ref|YP_003005322.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247539222|gb|ACT07843.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 762

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 208/809 (25%), Positives = 335/809 (41%), Gaps = 81/809 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPKLYNH----------VVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E     R L E   + +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMAKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFNNQDEFERLYVKYEQDDSIRK----QQIKAAELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +       +L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAISS-----LHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y++  A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSNGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +       +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKRDLDN----ICSEPLHHDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      D+  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------DMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQA S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGLMQKFIDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           GLKT YY  +R      +  L     + +
Sbjct: 725 GLKTLYYQNTRDGAEDAQDDLLDTAAQDD 753


>gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 621

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 20/576 (3%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +S  +F  +TPTLFNSGT +PQ+SSCFL   V D + GI+  L+  A+++K +GG+G   
Sbjct: 1   MSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSV 60

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
           + +R   ++I GTNG S G++P LKV NDTA  V+QGG KRKG+   YLE WH D+  FL
Sbjct: 61  SKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFL 120

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            LRKN G + +R  D+    WIPDLFM+RV  ++ WTL  P+E   L D YG+EF   Y 
Sbjct: 121 QLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYT 180

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +YE +           + A  LW++++     TG P++ +KD CN +S Q+++G + SSN
Sbjct: 181 DYESKNMGRV-----TMKARQLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSN 235

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           LCTEI   +S +E AVCNL SINL      +  F++DKL    +     L+ VID+N + 
Sbjct: 236 LCTEIIQYTSPDEVAVCNLASINLQKLIKEDKTFNFDKLLEITKIITTNLNIVIDLNFYP 295

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++A+ SN  +R IG+G+ GF  AL  + IP+ S +A+E+  +  E I + A   S+ELA
Sbjct: 296 VQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELA 355

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           Q+ G Y +F GS   QG+   D  G+  ++             W+ LK+ +   GMRNS 
Sbjct: 356 QQLGPYETFAGSPASQGILQFDMWGVSPKL-----------YDWNTLKQNIVKYGMRNSL 404

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ + I   ++S +P   N+Y +  ++G+F  +N  LV++L + +LW   + +
Sbjct: 405 LIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKN 464

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            L  ++GS+ NI+ IP ++K+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+ 
Sbjct: 465 KLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTM 524

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            K+  ++  AW  GLKT  YYLR+R A    K T+ 
Sbjct: 525 SKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTVD 560


>gi|119774863|ref|YP_927603.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           amazonensis SB2B]
 gi|119767363|gb|ABL99933.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella amazonensis SB2B]
          Length = 782

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 200/820 (24%), Positives = 345/820 (42%), Gaps = 81/820 (9%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            A    K  + +   + +    G     +  ++  +V  A  GL++VS   V   ++   
Sbjct: 10  RAIPIYKGLSSMNSNMTVTKRSGEREQIDLDKIHRVVTWAAKGLKNVSVSEVELRSHLQF 69

Query: 190 YDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           ++G+    +   +I ++  LI  E P+Y  + AR  +  LR++               E 
Sbjct: 70  FEGIPTEAIHETIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EP 119

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL- 307
             LY ++  + +E G   R + E     +L  L + + + RD  F Y  ++ L  +Y + 
Sbjct: 120 PKLY-DHVVKLVEMGKYDRHILEDYTKEELDVLDSYIDHWRDMNFSYAAVKQLEGKYLVQ 178

Query: 308 -HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTR 364
             +     E  Q  ++ VA  L     ++ +     +FY+ +S+F     TP +    T 
Sbjct: 179 NRVTHEVYESAQFLYILVAACLFAGYPKETRLKYVKDFYDAVSTFKISLPTPIMSGVRTP 238

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             Q SSC L    D L  I               G+G +   +R LG+ I G      G 
Sbjct: 239 TRQFSSCVLIECGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGC 298

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PF K       + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    
Sbjct: 299 LPFYKYFQTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQ 358

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKIS 541
           +  L  +R+ +    TLFSP +V  L+D + +   EFE  Y  YE++    +    + + 
Sbjct: 359 LNKLMYQRLIKGENITLFSPSDVPGLYDAFFENQDEFERLYTKYEQEPSIRK----KSLK 414

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS------ 594
           AV L+  M+     TG  ++   D CN  SP    V  +  SNLC EI L +        
Sbjct: 415 AVELFSLMMQERASTGRIYVQNVDHCNTHSPFDSSVAPIRQSNLCLEIALPTKPLDSVDD 474

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E A+C L ++NL A       + ++L      AVR LD+++D   + I+ AK  +  
Sbjct: 475 TNGEIALCTLSALNLGAIE-----NLEELEGLSDLAVRALDSLLDYQDYPIKAAKLGSMN 529

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +G+G++ F + L      Y+   A  +  ++ E I F+ + AS+ LA+E+GA  +F 
Sbjct: 530 RRTLGIGVINFANYLAKNGKKYSDGSANNLTHKTFEAIQFNLLKASMNLAKEKGACPAFH 589

Query: 713 GSLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            + + QG+ PID+    L ++ DE        L W+ L+  +K  G+RNS   A+ P+ T
Sbjct: 590 ETTYSQGILPIDTYKRDLDKICDE-----PLHLDWEGLRADIKHYGLRNSTLSALMPSET 644

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I   +  I+P    + VK++  G    V     +EL+        ++  +  +DG +
Sbjct: 645 SSQISNATNGIEPPRGLISVKASKDGQLKQVVPDF-DELRN----AYELLWQMPSNDGYL 699

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------K 884
                                           QK++DQA S N   D    +        
Sbjct: 700 Q--------------------------LVGIMQKFVDQAISANTNYDPAKFEGRKVPMQL 733

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           L      A+ +GLKT YY  +R   + +   +  V+ + +
Sbjct: 734 LLKDLLTAYKLGLKTLYYHNTRDGATDQHDDIAVVEKEDD 773


>gi|304439120|ref|ZP_07399039.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372479|gb|EFM26066.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 840

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/925 (29%), Positives = 430/925 (46%), Gaps = 120/925 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KR+G V  FD  KIS AI K+++ +              I  +T++ V ++ +   
Sbjct: 1   MNIRKRDGRVVDFDREKISTAIKKSYIGIMKPFEDS------YIDKITDKIVEKV-EDLY 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E IQD VE  L++     + + Y+ YR   S  R                   
Sbjct: 54  KDTIPTVEQIQDLVELELIEEKEIDVVKSYITYRAAHSKDRQVLRGFNE----------Y 103

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           ++D TL+S     +  +  +    L  + S      ++      +S+ D    LI ++  
Sbjct: 104 LEDDTLVSI----IRDVRNDYSRDLYPIESLFHKFSSF--CKKDMSQDDSRVMLIRAASE 157

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + +RF    L  ++            +++    + E      E  +  +
Sbjct: 158 LTTKEAPDWEYIASRFYRYDLELKI----------NENYKGIDTFYEKIKNLTEMNLYGK 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAM 326
            + E+    D+  L  ++  ERD    Y  + +L  RY +  +    +E PQ  FM +AM
Sbjct: 208 YILENYTKEDIDKLEKEIVPERDKLLTYSSIDLLAKRYLIRSHDMKVLERPQEMFMGIAM 267

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LAL E + + + A   Y +LS      +TPT+ N+     QLSSCF+ TV D L GI+ 
Sbjct: 268 HLALPEGKNKVEWATRIYTVLSKLQVTVATPTMNNARKPFYQLSSCFIDTVSDTLEGIYR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +L++ NDTAVAV+Q G R+
Sbjct: 328 SIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWLRLVNDTAVAVDQLGVRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           G+   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF +    N  A W +F 
Sbjct: 388 GSCAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVSYPDLFFRLAKNNIDADWYMFD 447

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D YG EFE  Y      A+  +    R IS   + R ++  L ETG 
Sbjct: 448 PHEIMVKKGYCLEDYYGDEFEKKYYECVHDANISK----RVISVKDMVRLIIKSLTETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+  F+D  N  +P +H G+++SSNLCTEI  N S                         
Sbjct: 504 PFAFFRDAVNKMNPNKHKGMIYSSNLCTEIMQNMSAIEAVSQEIETEEGDTVVVTKTKPG 563

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ +      N  D +++   + TAVR LDNVID+N + +  AK +N  +RA
Sbjct: 564 DFVVCNLASLVISNI---NLEDDEEVEYVVSTAVRGLDNVIDLNYYPLPYAKITNSKYRA 620

Query: 656 IGLGLMGFQSALHLLHIPYAS-PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           IGLG  G+  AL    I ++   E +E AD   E ++++A+ AS E+A+E+GAY  FKGS
Sbjct: 621 IGLGTSGYHHALIKEGIAFSDEEEHLEFADRVYEKLNYYAVKASNEIAKEKGAYEYFKGS 680

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WD G +                +       W++L+  +   GMRN   MA+APT + + 
Sbjct: 681 DWDNGNY--------------FELRGYHGKEWEDLRASIHEHGMRNGYIMAVAPTGSTSI 726

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G + ++DP  +  +++         +   +  +L  R  W                  
Sbjct: 727 IAGTTAAVDPVMKRFFLEEKKG----AIIPRVAPDLNTRTFW------------------ 764

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
                    ++  A EID   +I++   R + IDQ QS+NLY+    + +++  +Y +A 
Sbjct: 765 ---------LYEQAHEIDQSLIIKATGVRGRHIDQGQSVNLYITSDFTMRQILNLYIRAM 815

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKG 918
             GLK+ YY+RS+S    E    + 
Sbjct: 816 EEGLKSLYYVRSKSLEVDECEVCQA 840


>gi|317492552|ref|ZP_07950979.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919302|gb|EFV40634.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 761

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 201/805 (24%), Positives = 329/805 (40%), Gaps = 79/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVLDWAAEGLSNVSVSQVELRSHIQFYDGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTPEEFAQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRDTRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +K+ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYMQYEADDSIRK----QKVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL    +      D L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGVINS-----LDDLEELAVLAVRALDALLDYQDYPILAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTICNEPLHYDWEALRNDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V          R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----DRLKNAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PS     K+L      A+  G
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
            KT YY  +R      +  L+    
Sbjct: 726 AKTLYYQNTRDGAEDVQDDLQATPE 750


>gi|227114437|ref|ZP_03828093.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 761

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 206/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+  
Sbjct: 1   MNQSLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDKHLLEDYSQEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICNEPLHLDWEALRNDIKAYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      D+  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------DMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLM 895
                                QK++DQA S N   D    PS     K+L      A+  
Sbjct: 681 ----------------LVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDAQDDL 745


>gi|262043284|ref|ZP_06016415.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039383|gb|EEW40523.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 761

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 210/801 (26%), Positives = 334/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     L E   + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEKGKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFS  +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GGDITLFSLSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGIVSDPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++  G    V     N +     LW      ++  +DG +           
Sbjct: 637 PPRGHVSIKASKDGILRQVVPDYENLQNAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYHNTRDGAEDAQDDL 745


>gi|270262778|ref|ZP_06191049.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270043462|gb|EFA16555.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 762

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 201/806 (24%), Positives = 335/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLLAH----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYNSEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFANQDEFERLYTLYEKDDSIRQ----KRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ A +     R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANSLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +V      +      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDV----ICDEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R   +  ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKNEYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQ+ S N   D PS         K+L       +  
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYD-PSRFPAGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  L    G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDLLPAKG 750


>gi|215487451|ref|YP_002329882.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|215265523|emb|CAS09926.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 761

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E  
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMS 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|157833699|pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
          Length = 761

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/787 (25%), Positives = 331/787 (42%), Gaps = 79/787 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRS 907
           YY  +R 
Sbjct: 730 YYQNTRD 736


>gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 926

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 241/842 (28%), Positives = 388/842 (46%), Gaps = 118/842 (14%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSE 195
                  L +   DG L   +S +L   + +   GL    ++   +     + MY  ++ 
Sbjct: 60  PKKHEDTLHVSKRDGRLELLDSTKLLQRLTDLSDGLDMRFLNLVALTESIVRGMYPNVTT 119

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +++     ++ +L  + P+Y ++ AR L+ +  +   T   +  +   +         +
Sbjct: 120 HEIDVLAAETAASLGTQHPDYGRLAARILITQNHKTTPTCFSEAIETLYNSGKG-----F 174

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--R 313
               + E V+ R             + + + +ERD    Y G + L   Y L  +     
Sbjct: 175 IDHKVGELVRRRGP----------EIDSRIVHERDLEMTYFGYKTLERAYLLKKDNGNQV 224

Query: 314 IEMPQAFFMRVAMGLA-------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           +E PQ   MRVA+G+          E +  + A E Y+L+S   F  ++PTLF++GT HP
Sbjct: 225 LERPQYLMMRVALGIHCTSKMSSRSEDDCLEAAFETYDLMSRGFFTHASPTLFHAGTTHP 284

Query: 367 QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           QLSSCFL  +  D + GI+  L+  A+++K +GG+G     +R  G  I GT G S G++
Sbjct: 285 QLSSCFLVQMSEDSINGIYDTLKRCAVISKAAGGIGLSVHNIRARGTPIQGTRGVSNGLV 344

Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           P L+V + T+  V+QGG KR GA   YLE WH D+ + L L+KN G + +R  D+    W
Sbjct: 345 PMLRVFDVTSRYVDQGGGKRPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLW 404

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV ++  W+L  P +   L   YG +FE  Y++YE++         R++ A  
Sbjct: 405 IPDLFMKRVEEDDVWSLMCPHQCPGLAHCYGAKFEALYQHYEQEGK-----FVRQVRARE 459

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +L    ETG P++ +KD CN +S QQ++G +  SNLCTEI   S  EETAVCNL S
Sbjct: 460 LWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLAS 519

Query: 605 INLLAHFANNQ--------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           I L     + +              FD++ L    +   R L+++ID+N + ++ AK SN
Sbjct: 520 ICLPRFVVSERGTFGSISPESGSAFFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSN 579

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A   L +P+ S  A ++ +   E I   A+ AS ELA++ G Y +
Sbjct: 580 FKHRPIGIGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYET 639

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR----------------LPWDELKKRVK 754
           F GS   QG    +  GL  +                              W+ L++R+ 
Sbjct: 640 FAGSPASQGKLQFNLWGLSDDETPSHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIV 699

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  ++ A T+  +                                         
Sbjct: 700 KTGLRNS--LSWASTSVSSLSAQT------------------------------------ 721

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                  + +    GS+ NI  IPD LK+++ T +EI    +I+  + R K+IDQ     
Sbjct: 722 -----FRNQMMRDGGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADRGKFIDQ----- 771

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK--LNAVPVTDP 931
                P+  KL  ++  AW  GLKT  YYLR++ A +  + T++ +     +  +P  +P
Sbjct: 772 ----NPNMDKLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEKISPTVIVGGIPEAEP 827

Query: 932 NS 933
           + 
Sbjct: 828 DD 829


>gi|330829607|ref|YP_004392559.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
 gi|328804743|gb|AEB49942.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
          Length = 755

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 202/798 (25%), Positives = 325/798 (40%), Gaps = 79/798 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 3   LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETIIK 62

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E+ P+Y  + AR  +  LR++     ++ P             ++  R ++ G
Sbjct: 63  ATADLISEQTPDYQYMAARLAIFHLRKKAYGQ-FEPPHLY----------QHVARLVDMG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              + L E     +   L   L + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 112 KYDKHLLEDYTQAEFEELNTHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 172 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 232 LDSINATASSIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +  +   FE  Y  YE+     +    + + AV L+  M+     T
Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEELYVKYEQDPAIRK----KTLKAVDLFSLMMQERAGT 407

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNIDDESGEIALCTLSAFNL 467

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         + L      AVR LD ++D   + I  AKK +   R +G+G++ +   L
Sbjct: 468 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPIAAAKKGSMGRRTLGIGVINYAYYL 522

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+    + +   + E I ++ + ASV+LA+E G    F  + + QG+ PID+  
Sbjct: 523 AKNGARYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPLFGETTYAQGILPIDTYK 582

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N    L W+ L++ +K++G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 583 KDL----DALCNEPLHLDWESLREEIKSVGLRNSTLTALMPSETSSQISNATNGIEPPRG 638

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V          R      ++      DG +                
Sbjct: 639 LVSVKASKDGILKQVVPEY-----DRLKDQYELLWKQPSVDGYLQ--------------- 678

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N   D           K+L      A+  GLKT 
Sbjct: 679 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 727

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      ++ L+ 
Sbjct: 728 YYHNTRDGADDAQTDLQD 745


>gi|117620066|ref|YP_856856.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561473|gb|ABK38421.1| ribonucleoside-diphosphate reductase, alpha subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 767

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 198/798 (24%), Positives = 326/798 (40%), Gaps = 79/798 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 15  LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 74

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P             ++  + ++ G
Sbjct: 75  AAADLISEQSPDYQYMAARLAIFHLRKKAYGQ-FEPPHLY----------QHVAKLVDMG 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              + L E     +   L   L + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 124 KYDKHLLEDYSQAEFEELNQHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 183

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 184 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 243

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 244 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 303

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 304 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 363

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +  +   FE  Y  YE+     +    + + AV L+  M+     T
Sbjct: 364 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPSIRK----KTLKAVDLFSLMMQERAGT 419

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 420 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 479

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         + L      AVR LD ++D   + ++ A K +   R +G+G++ +   L
Sbjct: 480 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAMKGSMNRRTLGIGVINYAYYL 534

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+    + +   + E I ++ + ASV+LA+E G   +F  + + QG+ PID+  
Sbjct: 535 AKNGARYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 594

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L++ ++T+G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 595 KDLDN----LCNEPLHLDWEALREEIRTVGLRNSTLTALMPSETSSQISNATNGIEPPRG 650

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V          R      ++      DG +                
Sbjct: 651 LVSVKASKDGILKQVVPEY-----DRLKDQYELLWKQPSVDGYLQ--------------- 690

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N   D           K+L      A+  GLKT 
Sbjct: 691 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 739

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      ++ L+ 
Sbjct: 740 YYHNTRDGADDAQTDLQD 757


>gi|269102946|ref|ZP_06155643.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162844|gb|EEZ41340.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 755

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 203/805 (25%), Positives = 339/805 (42%), Gaps = 81/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  +++ A  GL++VS   V  +++   YDG+   D+  
Sbjct: 1   MTQQLTVTKRDGRTETLDLDKIHRVLDWAAEGLENVSVSQVELKSHIQFYDGMRTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 61  TIIKAAADLISEETPDYQYMAARLAIFHLRKKAYGQF----------EPPTLY-KHVSHL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E   + +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEQGKYDKHLLEDYTEEEFAVIDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLIAACLFAKYPKETRLDYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE+     E    + + A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGLYDAFFADQVEFERLYTQYEQD----ESIKKQSVKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + AS+ LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASLGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +   R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DKICSAELRYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K +D +   ++ ++  +DG +            
Sbjct: 637 PPRGYVSVKASKDGILKQVVP---EYTKYKDNY--ELLWNIGGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGIMQKFIDQAISANTNYD-PSRQPGGKVPMKLLLKDLLTAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           G+KT YY  +R   S  +  +   D
Sbjct: 725 GVKTLYYHNTRDGASDSQGDMGADD 749


>gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 733

 Score =  609 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 300/774 (38%), Positives = 418/774 (54%), Gaps = 105/774 (13%)

Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  LI ++   I+ + PN++ V +R  L  L  +V      +  K           EYF 
Sbjct: 1   QQTLIKTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLK-----------EYFE 49

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM 316
              E+G   R+L      FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+
Sbjct: 50  NAEEKG---RILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIEL 106

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + 
Sbjct: 107 PQHMFMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGST 166

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD++ GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+
Sbjct: 167 PDNIEGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAI 226

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AV+Q G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++
Sbjct: 227 AVDQLGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLED 286

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A WTLF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE 
Sbjct: 287 AMWTLFDPYECKDLTELYGQDFEKRYLEYEKDPKI----IKEYINAKDLWKKILMNYFEA 342

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---NLGSI-------- 605
           G P++ FKD  N  +P  H G++ SSNLCTEI  N++     +      GSI        
Sbjct: 343 GLPFLAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQL 402

Query: 606 ----------------------------------------NLLAHFANNQFDYDKLASTI 625
                                                   NL +   +     + +   +
Sbjct: 403 VTTDSNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVV 462

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              VR+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D 
Sbjct: 463 PIMVRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDA 522

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            ME IS+HAI  SV LA+E+G Y  F+ S W +G+FPID     A    E  +   +   
Sbjct: 523 LMEQISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CD 581

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   
Sbjct: 582 WQGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP- 640

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  +    + +A++ID   LI++A+ RQK
Sbjct: 641 ------------------------------NLNAETWNFYTSAYDIDAKDLIKAAAVRQK 670

Query: 866 WIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           WIDQ QS+N++  ++  SGK L  IY  AW +GLK+TYYLRS S +  EKS L 
Sbjct: 671 WIDQGQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLD 724


>gi|212712303|ref|ZP_03320431.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
 gi|212685049|gb|EEB44577.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
          Length = 763

 Score =  609 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 208/804 (25%), Positives = 328/804 (40%), Gaps = 81/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     ++ P+   H              
Sbjct: 61  TMIKAAADLITGETPDYQYLAARLAIFNLRKKAYGQ-FEPPKLYAH----------VKHL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E   + D   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLEDYTEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSHYPQATRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +     EFE  Y  YE+     E      + AV L+  M+  
Sbjct: 350 NQNITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD----ETIRKSSVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AKK +   R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDELEELAILAVRALDALLDYQDYPIPAAKKGSMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKREL----DKLTNEPLHYDWEALRAEIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V     N       LW       +  + G +           
Sbjct: 637 PPRGYISIKASKDGILRQVVPDYENLKGAYELLW------QMPSNSGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    P+GK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISSNTNYDPTRFPNGKVPMNQLLKDLLLAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY  +R      +  L+ V
Sbjct: 725 GVKTLYYHNTRDGAEDVQGDLEEV 748


>gi|2914260|pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914262|pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914264|pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
          Length = 761

 Score =  609 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 333/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           +Y  +R      +  L
Sbjct: 730 FYQNTRDGAEDAQDDL 745


>gi|307626228|gb|ADN70532.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
          Length = 761

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 204/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAINS-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A     ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNPTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R      +  L
Sbjct: 730 YYQNTRDGAEDAQDDL 745


>gi|238760195|ref|ZP_04621341.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238701574|gb|EEP94145.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 761

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 199/806 (24%), Positives = 333/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYSAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +     EFE  Y  YE+  +  +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYEAFFADQDEFERLYTQYEQDDNIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLEELAELAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus
            watsonii C-113]
 gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus
            watsonii C-113]
          Length = 1336

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 356/560 (63%), Positives = 426/560 (76%), Gaps = 14/560 (2%)

Query: 401  GNDWTPVRGLGA---HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
            G  +T +R            + K +G   ++     T   V+ GGKRKGAVCAYLETWHI
Sbjct: 785  GCLFTRLRSARNISPLPFVYDLKVEGDPSYM----TTTALVHNGGKRKGAVCAYLETWHI 840

Query: 458  DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
            D+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +N GWTLFSPDE  DLHDL G+ 
Sbjct: 841  DIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAENGGWTLFSPDETPDLHDLVGQA 900

Query: 518  FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            FE AY  YE +A RGEIK F+K  AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH G
Sbjct: 901  FEAAYLGYEGKASRGEIKNFKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAG 960

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            VVHSSNLCTEITLN+S +E AVCNLGSINL  H   +  +  KL  TI TA+R+LDNVID
Sbjct: 961  VVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVID 1020

Query: 638  INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
             N +++  A++SN  HR +GLGLMGFQ AL+   IPYAS  AVE AD SME IS++AI A
Sbjct: 1021 YNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKA 1080

Query: 698  SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTI 756
            S +LA ERG+Y +FK SLW QG+ PIDSI LL E R      +R+  L WD L+++VKT+
Sbjct: 1081 SSDLAAERGSYPTFKDSLWSQGILPIDSISLLEENRGGYFQQDRSRTLDWDSLREQVKTV 1140

Query: 757  GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LW
Sbjct: 1141 GMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKAQNLW 1200

Query: 817  DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            DE M++DLKY DGS   I+RIPD+LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY
Sbjct: 1201 DEVMVNDLKYFDGSAQPIDRIPDELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLY 1260

Query: 877  LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSST 935
            + EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT VEKST+  G   KLNAV     +S  
Sbjct: 1261 MAEPSGKKLDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSGQANKLNAV----QSSYI 1316

Query: 936  HSLGIPSSCTS-DTECEVCQ 954
             +   P +C+  D +CE CQ
Sbjct: 1317 QTSEAPQACSILDPDCEACQ 1336



 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/444 (53%), Positives = 304/444 (68%), Gaps = 4/444 (0%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
           M P        ++  P      P          +VI+RNG VT FDPSKI+ A+ KAF+A
Sbjct: 1   MKPESSTMSYHQEQIPDPETLDPAIRVTAPGQYRVIRRNGKVTGFDPSKIAVAMTKAFLA 60

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116
           +EG GA+ S R+   +++L EQ V    +  ++   VHIE IQDQVE +LM+ GHHKI R
Sbjct: 61  LEGNGAAMSKRIHQTVEDLAEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIAR 120

Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
            YVLYREER+  RA  +         P +++ + DG     +  RL  I+EEAC  L + 
Sbjct: 121 AYVLYREERARERAQGAAKNKKKATEPPIQVTLADGHTAPLDKARLTHIIEEACQNLPET 180

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
             + +L+ET +N++DG++E D+E ALI S+RT IEKEPNY+  TAR LL+ LRRE L+ +
Sbjct: 181 QPQAILNETLRNLFDGVAEQDVERALIMSARTFIEKEPNYSYATARLLLDSLRREALSFI 240

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
           +     AT  EM   YPEYF  YI +G + +L+   +  +DL  L   L+ ERDF F YL
Sbjct: 241 HGMETHATQQEMIERYPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYL 300

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYF+H  G+R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STP
Sbjct: 301 GLQTLYDRYFIHSGGTRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTP 360

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSG+  PQLSSC+LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI G
Sbjct: 361 TLFNSGSLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKG 420

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQ 440
           TNGKSQGV+PFLKV NDTAVAVNQ
Sbjct: 421 TNGKSQGVVPFLKVTNDTAVAVNQ 444


>gi|253687497|ref|YP_003016687.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754075|gb|ACT12151.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 761

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 204/801 (25%), Positives = 329/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+  
Sbjct: 1   MNQSLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      ++  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------EMPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLM 895
                                QK++DQA S N   D    PS     K+L      A+  
Sbjct: 681 ----------------LVGLMQKFVDQAISSNTNYDPSRFPSGKVPMKQLLKDLVTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDVQDDL 745


>gi|238785707|ref|ZP_04629682.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238713392|gb|EEQ05429.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 761

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 199/806 (24%), Positives = 336/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V +L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPELYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPTVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISSEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       + +
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|269139683|ref|YP_003296384.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|267985344|gb|ACY85173.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|304559552|gb|ADM42216.1| Ribonucleotide reductase of class Ia, alpha subunit [Edwardsiella
           tarda FL6-60]
          Length = 760

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 207/800 (25%), Positives = 329/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TIIKAAADLISRETPDYQYMAARLAIFHLRKKAYGQF----------EPPKLY-DHVVRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDAHLLTDFSRDEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +  +   FE  Y  YE+ +   +    RKI AV L+  M+  
Sbjct: 350 GGEITLFSPSDVPGLYDAFFADQNQFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDSQ-----DDLEELATLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   +      W+ L+  +   G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKDL----DAICSEPLHYDWETLRAEIVRDGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  +  +DG +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLKDAYELLWAMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PS     K+L      A+ +G
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDMQEDL 745


>gi|284793845|pdb|2X1Y|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793846|pdb|2X1Y|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793847|pdb|2X1Y|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662301|pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662302|pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662303|pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|303324818|pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324819|pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324820|pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           Y   +R      +  L
Sbjct: 730 YXQNTRDGAEDAQDDL 745


>gi|22126851|ref|NP_670274.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45440762|ref|NP_992301.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108806925|ref|YP_650841.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108812923|ref|YP_648690.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145599748|ref|YP_001163824.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|149366795|ref|ZP_01888829.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|153949921|ref|YP_001401733.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420851|ref|YP_001605846.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|165924688|ref|ZP_02220520.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938388|ref|ZP_02226946.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166009893|ref|ZP_02230791.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211738|ref|ZP_02237773.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400331|ref|ZP_02305844.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419736|ref|ZP_02311489.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423852|ref|ZP_02315605.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025072|ref|YP_001721577.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|186894661|ref|YP_001871773.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928373|ref|YP_002346248.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|229841158|ref|ZP_04461317.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843263|ref|ZP_04463409.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894121|ref|ZP_04509307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|229903353|ref|ZP_04518466.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|270487163|ref|ZP_06204237.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294503228|ref|YP_003567290.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21959883|gb|AAM86525.1|AE013899_2 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Yersinia
           pestis KIM 10]
 gi|45435620|gb|AAS61178.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776571|gb|ABG19090.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Nepal516]
 gi|108778838|gb|ABG12896.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Antiqua]
 gi|115346984|emb|CAL19875.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CO92]
 gi|145211444|gb|ABP40851.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|149291169|gb|EDM41244.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|152961416|gb|ABS48877.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353666|gb|ABX87614.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
 gi|165913766|gb|EDR32385.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923748|gb|EDR40880.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165991289|gb|EDR43590.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207509|gb|EDR51989.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962477|gb|EDR58498.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050280|gb|EDR61688.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056701|gb|EDR66464.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751606|gb|ACA69124.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186697687|gb|ACC88316.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679123|gb|EEO75226.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|229689610|gb|EEO81671.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697524|gb|EEO87571.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704006|gb|EEO91019.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|262361267|gb|ACY57988.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
 gi|262365196|gb|ACY61753.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270335667|gb|EFA46444.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294353687|gb|ADE64028.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320015944|gb|ADV99515.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 762

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 198/804 (24%), Positives = 332/804 (41%), Gaps = 81/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P    H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKGAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY  +R      +  ++  
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSS 748


>gi|260768283|ref|ZP_05877217.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|260616313|gb|EEX41498.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|315179990|gb|ADT86904.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           furnissii NCTC 11218]
          Length = 760

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/810 (25%), Positives = 332/810 (40%), Gaps = 82/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++    
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLL----------DHVSAM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +   L   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREEFELLNGFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKATRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           R + AV ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKRTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLVNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D+++LA  +   VR LD ++D   + +  A+KS    R +G+G++ +
Sbjct: 466 AFNLGAI--EKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PI
Sbjct: 521 AYYLARHGVKYSDGSANGLTHRTFEAMQYYLLKASVNLAKEQGKCPAFDETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      W+ L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DLLCDEPLHYDWNALREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSQYDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSAT-SVEKSTLKGVDGKLN 924
           G+KT YY  +R      +K  ++  D    
Sbjct: 725 GVKTLYYHNTRDGAKDDQKDAVQPADDDCA 754


>gi|293395207|ref|ZP_06639493.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422384|gb|EFE95627.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 762

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 197/801 (24%), Positives = 332/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            R 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLHAH----------VVRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   + + + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYSTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRQ----KRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ A +     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DGICQEPLHYDWETLRKEIQETGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDAYELLWEMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQ+ S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYD-PTRFAGGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  +
Sbjct: 725 GVKTLYYQNTRDGAEDVQEDM 745


>gi|283806799|pdb|2X0Z|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806800|pdb|2X0Z|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806801|pdb|2X0Z|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662294|pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662295|pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662296|pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|303324811|pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324812|pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324813|pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
            Y  +R      +  L
Sbjct: 730 XYQNTRDGAEDAQDDL 745


>gi|51595598|ref|YP_069789.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588880|emb|CAH20494.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
          Length = 762

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 198/804 (24%), Positives = 332/804 (41%), Gaps = 81/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P    H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPTLFAH----------VSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSGYPRESRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKGAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY  +R      +  ++  
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSS 748


>gi|15641269|ref|NP_230901.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121590732|ref|ZP_01678063.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121729794|ref|ZP_01682230.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|147674951|ref|YP_001216821.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O395]
 gi|153212312|ref|ZP_01948100.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|153823599|ref|ZP_01976266.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|153827302|ref|ZP_01979969.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|153829751|ref|ZP_01982418.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|227081428|ref|YP_002809979.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|229505157|ref|ZP_04394667.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229511171|ref|ZP_04400650.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229515629|ref|ZP_04405088.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229518290|ref|ZP_04407734.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229521369|ref|ZP_04410788.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229525855|ref|ZP_04415260.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229529664|ref|ZP_04419054.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229608177|ref|YP_002878825.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           MJ-1236]
 gi|254291707|ref|ZP_04962494.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|254848380|ref|ZP_05237730.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255745653|ref|ZP_05419601.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262159071|ref|ZP_06030183.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262169429|ref|ZP_06037121.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262191405|ref|ZP_06049593.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297578848|ref|ZP_06940776.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|298498652|ref|ZP_07008459.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547413|gb|EAX57524.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121628469|gb|EAX60959.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|124116690|gb|EAY35510.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|126518878|gb|EAZ76101.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|146316834|gb|ABQ21373.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|148874785|gb|EDL72920.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|149738793|gb|EDM53135.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|150422391|gb|EDN14351.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|227009316|gb|ACP05528.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|227013173|gb|ACP09383.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|229333438|gb|EEN98924.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229339436|gb|EEO04453.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229341467|gb|EEO06470.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229345005|gb|EEO09979.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229347398|gb|EEO12358.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229351136|gb|EEO16077.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229357380|gb|EEO22297.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229370832|gb|ACQ61255.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae MJ-1236]
 gi|254844085|gb|EET22499.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255736728|gb|EET92125.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262022242|gb|EEY40951.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262029256|gb|EEY47908.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262032694|gb|EEY51244.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297536442|gb|EFH75275.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|297542985|gb|EFH79035.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|327483945|gb|AEA78352.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/811 (24%), Positives = 333/811 (41%), Gaps = 81/811 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMG 896
                        +      QK++DQA S N   D  +        KKL      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKS--TLKGVDGKLNA 925
           +KT YY  +R     E++  T+K  +    +
Sbjct: 726 VKTLYYHNTRDGAKDEQTDATVKVQEDDCAS 756


>gi|227328223|ref|ZP_03832247.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 761

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 202/800 (25%), Positives = 328/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+  
Sbjct: 1   MNQSLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+  
Sbjct: 350 GEEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAGELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V         +       ++ D+  +DG +            
Sbjct: 637 PPRGHISVKASKDGILRQVVPEY-----ETLKDSYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK++DQA S N   D    PS     K+L      A+  G
Sbjct: 681 ---------------LVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDVQDDL 745


>gi|283786034|ref|YP_003365899.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282949488|emb|CBG89101.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 761

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/800 (25%), Positives = 333/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGEF----------EPPALY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP ++  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEEITLFSPSDMPGLYDAFFADQDEFERLYCQYEKDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      ++L      AVR LD ++D   + I  A++     R +G+G++ +
Sbjct: 466 AFNLGAINS-----LEELEDLAVLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIASEPLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDY-----EHLGNAYELLWEMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQDDL 745


>gi|258624429|ref|ZP_05719376.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
 gi|258583276|gb|EEW08078.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
          Length = 760

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/800 (25%), Positives = 327/800 (40%), Gaps = 81/800 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIQS-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                         +      QK++DQA S N   D  +        KKL      A+  
Sbjct: 678 -------------YLHLVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY  +R     E++ 
Sbjct: 725 GVKTLYYHNTRDGAKDEQTD 744


>gi|318606421|emb|CBY27919.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 761

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/806 (24%), Positives = 334/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|292488818|ref|YP_003531705.1| ribonucleotide reductase subunit alpha [Erwinia amylovora CFBP1430]
 gi|292899969|ref|YP_003539338.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291199817|emb|CBJ46940.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554252|emb|CBA21548.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora
           CFBP1430]
 gi|312172976|emb|CBX81231.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 761

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/801 (25%), Positives = 330/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++     ++ P+                R 
Sbjct: 61  TIIKSAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFANQEEFERLYTQYEQDGSIRK----QRVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAIDS-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ VKT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICNTPLLLDWEALRESVKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +    +  ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ELLKDNYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L      A+  
Sbjct: 681 ---------------LVGLMQKFVDQAISSNTNYD-PTRFANGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDSQDDL 745


>gi|261380738|ref|ZP_05985311.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
 gi|284796456|gb|EFC51803.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
          Length = 759

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 198/790 (25%), Positives = 329/790 (41%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  +  E G
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLY----------DHVKKLTEAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R +       +   L   + + RD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++     T
Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP   HV  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 412 GRIYIQNVDHCNTHSPFDPHVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 471

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L
Sbjct: 472 GALN-----NLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYL 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+  
Sbjct: 527 AKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYK 586

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 587 KDL----DAVCSEPLHYDWESLRAGIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 643 LVSVKASKDGILKQVVPEF--------------------------------ETLKDAYET 670

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D         S K++      A+  G+KT
Sbjct: 671 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKT 730

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 731 LYYHNTRDGA 740


>gi|289526538|pdb|2X59|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526539|pdb|2X59|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526540|pdb|2X59|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662336|pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662337|pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662338|pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 202/796 (25%), Positives = 331/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNL  EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
            Y  +R      +  L
Sbjct: 730 XYQNTRDGAEDAQDDL 745


>gi|329119973|ref|ZP_08248645.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463886|gb|EGF10200.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 759

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 202/792 (25%), Positives = 332/792 (41%), Gaps = 81/792 (10%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +
Sbjct: 5   ENLKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI +E P+Y  + AR  +  LR+      ++ P             ++  +  E
Sbjct: 65  IKAAADLISQETPDYQYLAARLAIFHLRKIAYGQ-FEPPHLF----------DHVKKLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQA 319
            G   R + E     +   L   + + RD  F Y  ++ L  +Y +   +     E PQ 
Sbjct: 114 AGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQF 173

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VAM L  K  +  +      FY+ +S+F     TP +    T   Q SSC L    
Sbjct: 174 LYVLVAMCLFSKYPKDTRLNYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECD 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +RGLGA I G   +  G IPF K+      +
Sbjct: 234 DSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGAEIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGG 353

Query: 498 GWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++    
Sbjct: 354 NITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSI 605
            TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + 
Sbjct: 410 GTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAF 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +  
Sbjct: 470 NLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAY 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+
Sbjct: 525 YLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDT 584

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 585 YKKDL----DAVCSEPLLCDWESLRADIVEHGLRNSTLTALMPSETSSQIANATNGIEPP 640

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + VK++  G    V                                    + LK  +
Sbjct: 641 RGLVTVKASKDGILKQVVPEF--------------------------------ETLKDAY 668

Query: 846 ATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGL 897
            T +++      ++     QK++DQA S N   D       + S K++      A+  G+
Sbjct: 669 ETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGV 728

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 729 KTLYYHNTRDGA 740


>gi|238794994|ref|ZP_04638590.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238725697|gb|EEQ17255.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 761

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 199/806 (24%), Positives = 333/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++       +P K           ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLF---------DHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|332162348|ref|YP_004298925.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666578|gb|ADZ43222.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864219|emb|CBX74277.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Yersinia
           enterocolitica W22703]
          Length = 761

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 200/806 (24%), Positives = 334/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|268591163|ref|ZP_06125384.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291313389|gb|EFE53842.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 763

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/810 (25%), Positives = 329/810 (40%), Gaps = 81/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI    P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 61  TMIKAAADLITGDTPDYQYLAARLAIFNLRKKAYGQF----------EPPALY-KHVKHL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E   + +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLEDYSEAEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +     EFE  Y  YE+     E      + AV L+  M+  
Sbjct: 350 NQDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQD----ENIRKSSVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK+ +   R +G+G++ +
Sbjct: 466 AFNLGAIDS-----LDELEELAILAVRALDALLDYQDYPIIAAKQGSMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKEL----DKLTNEPLHYDWEALRQEIKQHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V     N       LW       +  + G +           
Sbjct: 637 PPRGYISIKASKDGILRQVVPDYENLKGAYELLW------QMPSNSGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    +       +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPTRFESGKVPMNQLLKDLLLAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           G+KT YY  +R      +  L+ V    ++
Sbjct: 725 GVKTLYYHNTRDGAEDVQGDLEEVVESADS 754


>gi|225075857|ref|ZP_03719056.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
 gi|224952803|gb|EEG34012.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
          Length = 759

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 199/799 (24%), Positives = 332/799 (41%), Gaps = 81/799 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  +  E G
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLY----------DHVKKLTEAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R +       +   L   + + RD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++     T
Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N +  E A+C L + NL
Sbjct: 412 GRIYIQNVDHCNTHSPFDPRVASVHQSNLCMEIALPTKPLDNINDAEGEIALCTLSAFNL 471

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       D D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L
Sbjct: 472 GALN-----DLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYL 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+  
Sbjct: 527 AKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYK 586

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 587 KDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 643 LVSVKASKDGILKQVVPEF--------------------------------ETLKDAYET 670

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D         S K++      A+  G+KT
Sbjct: 671 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKT 730

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY  +R      ++ ++ 
Sbjct: 731 LYYHNTRDGADDTQADIQD 749


>gi|123441722|ref|YP_001005706.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088683|emb|CAL11485.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 761

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 200/806 (24%), Positives = 335/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNELAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKEAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|262165507|ref|ZP_06033244.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
 gi|262025223|gb|EEY43891.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
          Length = 760

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/800 (25%), Positives = 327/800 (40%), Gaps = 81/800 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIQS-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                         +      QK++DQA S N   D  +        KKL      A+  
Sbjct: 678 -------------YLHLVGIMQKFVDQAISANTNYDPSNFASGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY  +R     E++ 
Sbjct: 725 GVKTLYYHNTRDGAKDEQTD 744


>gi|145298926|ref|YP_001141767.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851698|gb|ABO90019.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 755

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 200/788 (25%), Positives = 322/788 (40%), Gaps = 79/788 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 3   LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 62

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++     ++ P             ++  R ++ G
Sbjct: 63  ATADLISEQSPDYQYMAARLAIFHLRKKAYGQ-FEPPHLY----------QHVARLVDMG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              + L       +   L   L + RD  F Y  ++ L  +Y +   + G   E PQ  +
Sbjct: 112 KYDKHLLTDYTQAEFEELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 172 ILVAACLFSKYPKDTRLSYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 232 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +  +   FE  Y  YE+     +    + I AV L+  M+     T
Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPAIRK----KTIKAVDLFSLMMQERAGT 407

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI L +           E A+C L + NL
Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 467

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         + L      AVR LD ++D   + ++ A+K +   R +G+G++ +   L
Sbjct: 468 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYL 522

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+    + +   + E I F+ + ASV+LA+E G   +F  + + QG+ PID+  
Sbjct: 523 AKNGARYSDGSGLALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 582

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L++ +KT+G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 583 KDLDN----LCNEPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNSTNGIEPPRG 638

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V          R      ++      DG +                
Sbjct: 639 LVSVKASKDGILKQVVPEY-----HRLKDQYELLWKQPSVDGYLQ--------------- 678

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N   D           K+L      A+  GLKT 
Sbjct: 679 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 727

Query: 901 YYLRSRSA 908
           YY  +R  
Sbjct: 728 YYHNTRDG 735


>gi|258620210|ref|ZP_05715249.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|262171720|ref|ZP_06039398.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
 gi|258587568|gb|EEW12278.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|261892796|gb|EEY38782.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
          Length = 760

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/800 (25%), Positives = 327/800 (40%), Gaps = 81/800 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLFNH----------VSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIQS-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                         +      QK++DQA S N   D  +        KKL      A+  
Sbjct: 678 -------------YLHLVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY  +R     E++ 
Sbjct: 725 GVKTLYYHNTRDGAKDEQTD 744


>gi|85059562|ref|YP_455264.1| ribonucleotide-diphosphate reductase subunit alpha [Sodalis
           glossinidius str. 'morsitans']
 gi|84780082|dbj|BAE74859.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 760

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 203/804 (25%), Positives = 332/804 (41%), Gaps = 81/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG   + N  ++  +++ A  GL++VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKETINLDKIHRVIDWAAEGLENVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TIIKAAADLISREAPDYQYLAARLAVFHLRKKAYGQF----------EPPKLY-DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L       +   + + + + RD  F Y  ++ L  +Y     + G   E  
Sbjct: 110 VTMGKYDKHLLTDYSAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VA  L        +      FYN +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVAACLFSGYPRTTRLDYVKRFYNAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TL SP +V  L+D +     EFE  Y  YE+ +   +    R+I AVAL+  M+  
Sbjct: 350 GEYITLLSPSDVPGLYDAFFADQDEFERLYTLYEQDSSIRQ----RRIKAVALFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N  S E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDAAVAPIRQSNLCLEIALPTKPLEDVNDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLGELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ P+
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHRTFEAIQYYLLKASNDLARERGACPWFNETTYAQGILPV 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++      W+ L+  +K  G+RNS   A+ P+ T + I   +  ++
Sbjct: 581 DTYKKDL----DGIVSEPLHYDWEALRADIKQHGLRNSTLSALMPSETSSQISNATNGLE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V    +   K  +L     + ++  +DG              
Sbjct: 637 PPRGLVSIKASKDGILRQVVPESIPLQKAYEL-----LWEMPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         K+L      A+  
Sbjct: 678 ------------YLHLVGVMQKFVDQAISANTNYD-PSRFPAGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY  +R      +  ++  
Sbjct: 725 GVKTLYYQNTRDGAEDAQEDMQST 748


>gi|89074074|ref|ZP_01160575.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
 gi|89050212|gb|EAR55723.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
          Length = 755

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 204/805 (25%), Positives = 336/805 (41%), Gaps = 81/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S +  ++  ++E A  GL++VS   V  +++   YDG+   D+  
Sbjct: 1   MTQQLTVTKRDGRTESIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 61  TIIKAAADLISEDTPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-DHVKNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     L E   + +   + N + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEKGKYDSHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+            +    R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDINNICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K ++ +   ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVP---EYAKYKENY--ELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGIMQKFIDQAISANTNYD-PSKQAGGKVPMKLLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           G+KT YY  +R   S  +  +   D
Sbjct: 725 GVKTLYYHNTRDGASDSQGDMAADD 749


>gi|319638205|ref|ZP_07992968.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
 gi|317400478|gb|EFV81136.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
          Length = 759

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 196/790 (24%), Positives = 328/790 (41%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   +  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEDIDLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  +  + G
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLY----------DHVKKLTDAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R +       +   L   + + RD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++     T
Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLPATELFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 412 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 471

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L
Sbjct: 472 GALN-----NLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYL 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+  
Sbjct: 527 AKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYK 586

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 587 KDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 643 LVSVKASKDGILKQVVPEF--------------------------------ETLKDAYET 670

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D         S K++      A+  G+KT
Sbjct: 671 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKT 730

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 731 LYYHNTRDGA 740


>gi|285803183|pdb|2X3S|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803184|pdb|2X3S|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803185|pdb|2X3S|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662329|pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662330|pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662331|pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 202/796 (25%), Positives = 331/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNL  EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
            Y  +R      +  L
Sbjct: 730 XYQNTRDGAEDAQDDL 745


>gi|148978905|ref|ZP_01815225.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962103|gb|EDK27389.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
          Length = 760

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 329/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLSVFHLRKKAYGE----------YEPPALY-DHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L E     +   L + + ++RD  F Y  ++ L  +YF+   +     E  
Sbjct: 110 VDMGKYDSHLMEDYTKAEFDELDSYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFENQERFEELYVKYENDPSI----KRETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D LA      VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIN-----ELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCDEPLHYDWDALREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +N  +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFLNLKE-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSVYDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|84386982|ref|ZP_00990006.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
 gi|84378272|gb|EAP95131.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
          Length = 760

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 200/798 (25%), Positives = 327/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLSVFHLRKKAYGE----------YEPPALY-DHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L E     +   L   + ++RD  F Y  ++ L  +YF+   +     E  
Sbjct: 110 VDMGKYDSHLMEDYTKAEFEELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTKEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFENQERFEALYVKYENDP----SVKRETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D LA      VR LD ++D   + +  A+KS    R +G+G++ +
Sbjct: 466 AFNLGAIN-----ELDDLAELSELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +N        +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFLN-----LKDNYELLWNIGTNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         K+L      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSVYDSGKVPMKQLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|91775576|ref|YP_545332.1| ribonucleotide-diphosphate reductase subunit alpha [Methylobacillus
           flagellatus KT]
 gi|91709563|gb|ABE49491.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Methylobacillus flagellatus KT]
          Length = 774

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 201/805 (24%), Positives = 333/805 (41%), Gaps = 80/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K    DG     N  ++  +++ A  GL +VS   V  +++   YDG+    +  
Sbjct: 18  QYESMKATKRDGRQEPINLDKIHRVIDWAAQGLDNVSVSQVELKSHIQFYDGIRTDVIHE 77

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 78  TIIKSAADLISEETPDYQYLAARLSIFHLRKIAYGQ-FEPPHLF----------DHVTKL 126

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            E G   + + +     +   L + L + RD  F Y  ++ L  +Y +   +     E P
Sbjct: 127 TEMGKYDKHILQDYSREEFDALNDHLDHWRDMNFSYAAVKQLEGKYLVQNRVTKKIYESP 186

Query: 318 QAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VAM L  +   K +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 187 QFLYMLVAMCLFARYEGKTRLEYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 246

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G +PF K+     
Sbjct: 247 CDDSLDSINATTSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAQHTGCLPFYKLFQAAV 306

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ +
Sbjct: 307 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQINRLLYQRLIK 366

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    R + AV L+  ++  
Sbjct: 367 GGNITLFSPHDVPGLYDAFFADQDEFERLYTQYEA----NDSLRKRIVPAVDLFSLLMQE 422

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     +  V  SNLC EI         +N  + E A+C L 
Sbjct: 423 RAGTGRIYIQNVDHCNTHSPFNPRLAPVRQSNLCMEIALPTRPLNDINDENGEIALCTLS 482

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + ++ A  +    R++G+G++ +
Sbjct: 483 AFNLGALES-----LDELEGLADLVVRALDALLDYQDYPVKAAFNATQKRRSLGVGVINY 537

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y    A+ +   + E I ++ + ASV+LA+E G   +F  + + QG+ PI
Sbjct: 538 AYYLAKNGTGYTDDAALGLTHRTFEAIQYYLLKASVQLAREFGPCGAFNETTYSQGILPI 597

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +       +L W++L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 598 DTYKKDL----DAVCQEALQLDWEQLRKDIVAHGLRNSTLTALMPSETSSQIANATNGIE 653

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK +  G    V   +     +R      ++  L  +DG              
Sbjct: 654 PPRGLVSVKQSKDGILRQVVPEI-----ERLRNQYQLLWSLPNNDG-------------- 694

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                        ++     QK++DQ+ S N   D       +   K+L     QA+ +G
Sbjct: 695 ------------YLKLVGIMQKFVDQSISSNTNYDPKRFEGGKVPMKQLLKDLLQAYKLG 742

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           +KT YY  +R   S E     G DG
Sbjct: 743 IKTLYYHNTRDGAS-EGGAEAGDDG 766


>gi|238788615|ref|ZP_04632407.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238723210|gb|EEQ14858.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 761

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 198/806 (24%), Positives = 334/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISDEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|37526940|ref|NP_930284.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786373|emb|CAE15426.1| ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide
           reductase 1) (B1 protein) (R1 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 763

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 202/809 (24%), Positives = 334/809 (41%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+  
Sbjct: 1   MNHSLLVTKRDGHKERIDLDKIHRVVNWAADGLKNVSVSQVELRSQIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I +S  LI  + P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TMIKASADLISGDAPDYQYLAARLAIFNLRKKAYGQF----------EPPSLY-DHVSRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKMGKYDKHLLADYSKEEFEQMNEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +     EFE  Y  YE+ ++  +    +++ AV L+  M+  
Sbjct: 350 GEEITLFSPSDVPGLYEAFFADQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAIE-----NLDELEELATLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DTYKKAL----DTLTNEPLHYDWEALRNEIKQYGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  +  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKGAYELLWQMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPTHFPSGKVPMNQLLKDLLLAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 726 VKTLYYHNTRDGAEDIQDDLEEVVESADS 754


>gi|238753721|ref|ZP_04615082.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238707957|gb|EEQ00314.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 761

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 198/805 (24%), Positives = 333/805 (41%), Gaps = 79/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++       +P K           ++  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQF--EPPKLF---------DHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     D   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VDMGKYDKHLLEDYTAEDFQQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRHTRMDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +  +   FE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQEQFERLYTQYEQDSSIRQ----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + IE A++     R +G+G++ +
Sbjct: 466 AFNLGAIDS-----LDELEDLANLAVRALDALLDYQDYPIEAARRGAMGRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNHLAREQGACEWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKEAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQA S N   D    PS     K+L       +  G
Sbjct: 681 ---------------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTTYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           +KT YY  +R      +  ++   G
Sbjct: 726 VKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
 gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
          Length = 1336

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 350/560 (62%), Positives = 423/560 (75%), Gaps = 14/560 (2%)

Query: 401  GNDWTPVRGLGA---HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
            G  +T +R            + K +G   ++     T   V+ GGKRKGAVCAYLETWHI
Sbjct: 785  GFLFTRLRSARDISPLPFVYDLKVEGDPSYM----TTTALVHNGGKRKGAVCAYLETWHI 840

Query: 458  DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
            D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV ++ GWTLFSPDE  DLHDL G+ 
Sbjct: 841  DIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVAEDGGWTLFSPDETPDLHDLVGQA 900

Query: 518  FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            FE AY  YE +A RGEIK F+K  AV LWRKML+MLFETGHPWI FKDPCN+RSPQQH G
Sbjct: 901  FEAAYLGYEDKASRGEIKNFKKRRAVDLWRKMLSMLFETGHPWIAFKDPCNLRSPQQHAG 960

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            VVHSSNLCTEITLN+S +E AVCNLGSINL  H   +  +  KL  TI TA+R+LDNVID
Sbjct: 961  VVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLDEDGLNLPKLEKTITTAMRMLDNVID 1020

Query: 638  INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
             N +++  A++SN  HR +GLGLMGFQ AL+   IPYAS  AVE AD SME IS++AI A
Sbjct: 1021 YNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRIPYASEAAVEFADHSMEAISYYAIKA 1080

Query: 698  SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTI 756
            S  LA ERG+Y +F+GSLW QG+ PIDSI LL E R      +R+  L WD L+++VKT+
Sbjct: 1081 SSNLAAERGSYHTFEGSLWSQGLLPIDSISLLEESRGSYFQQDRSHTLDWDSLREQVKTV 1140

Query: 757  GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK ++LW
Sbjct: 1141 GMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKAQNLW 1200

Query: 817  DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            DE M++DLKY DGS   I+RIP++LK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY
Sbjct: 1201 DEVMVNDLKYFDGSAQPIDRIPEELKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLY 1260

Query: 877  LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV-DGKLNAVPVTDPNSST 935
            + EP+GKKLD +Y+ AW+ GLKTTYYLRS  AT VEKST+      KLNAV     +   
Sbjct: 1261 MAEPNGKKLDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSDQANKLNAV----QSGYI 1316

Query: 936  HSLGIPSSCT-SDTECEVCQ 954
                 P +C+  D +CE CQ
Sbjct: 1317 QKSEAPQACSVQDPDCEACQ 1336



 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/429 (55%), Positives = 305/429 (71%), Gaps = 3/429 (0%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E   P++    P +    +VI+RNG VT FDPSKI+ A+ KAF+A+EG GA+ S R+   
Sbjct: 20  EALDPTVRVTAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLALEGNGAAMSKRIHQT 76

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           ++ LTEQ V    +  ++   VHIE IQDQVE +LM+ GHHKI R YVLYREER+  RA 
Sbjct: 77  VEVLTEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIARAYVLYREERARERAQ 136

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
            +       I P +++ + DG     +  RL  IVEEAC  L +   + +++ET +N++D
Sbjct: 137 TAAKNKKKTIEPPIQVTLADGRTAPLDKARLTRIVEEACQNLPETQPQAIINETLRNLFD 196

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G++E D+E ALI S+RT IEKEPNY+  TAR LL+ LRRE L+ ++     AT  EM   
Sbjct: 197 GVAEQDVERALIMSARTFIEKEPNYSYTTARLLLDSLRREALSFIHGMETHATQQEMIER 256

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           YPEYF  YI +G + +L+   +  +DL  L   L+ ERDF F YLGLQ LYDRYF+H  G
Sbjct: 257 YPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYLGLQTLYDRYFIHSGG 316

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STPTLFNSG+  PQLSSC
Sbjct: 317 TRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTPTLFNSGSLRPQLSSC 376

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PFLKV 
Sbjct: 377 YLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVT 436

Query: 432 NDTAVAVNQ 440
           NDTAVAVNQ
Sbjct: 437 NDTAVAVNQ 445


>gi|225023975|ref|ZP_03713167.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
 gi|224943000|gb|EEG24209.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
          Length = 759

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 202/799 (25%), Positives = 333/799 (41%), Gaps = 81/799 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAQGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +   EG
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRKIAYGQ-YEPPHLF----------DHVSKLTAEG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   +   + + RD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDEIDGYIDHARDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  +  +      FY+ +S F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFAKYPKATRLDYVKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+VE  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEVESLLVLKNNRGVEDNRVRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+     +    R + A  L+  ++     T
Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYVQYEQDPAIRK----RVVPATELFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D  N  SP    V  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 412 GRIYIHNVDHSNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 471

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L +    AVR LD ++D   + I  A+K+    R +G+G++ +   L
Sbjct: 472 GALE-----NLDELENLSDLAVRALDALLDYQDYPIPAARKATMNRRTLGIGVINYAYYL 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y++  A+ +   + E + ++ + ASV+LA+E GA   F  +++ +GV PID+  
Sbjct: 527 AKHGVRYSNDSALALTHRTFEAMQYYLLKASVQLAKEYGACPLFGQTMYAKGVLPIDTYK 586

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 587 KDL----DSICSEPLHYDWEALRAEIVQHGLRNSTLTALMPSETSSQIANATNGIEPPRG 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    D LK  + T
Sbjct: 643 LVSVKASKDGILKQVVPEF--------------------------------DRLKNQYET 670

Query: 848 AFEIDPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQA S N   D           K++      A+  GLKT
Sbjct: 671 LWQMGGNDGYLKLVGIMQKFVDQAISANTSYDPKRFDGGRVPMKQMLKDLLTAYKFGLKT 730

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY  +R      +S ++ 
Sbjct: 731 LYYHHTRDGADDTQSDIQD 749


>gi|90581240|ref|ZP_01237038.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
 gi|90437611|gb|EAS62804.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
          Length = 755

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 204/805 (25%), Positives = 335/805 (41%), Gaps = 81/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+  
Sbjct: 1   MTQQLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY E+    
Sbjct: 61  TIIKAAADLISEDTPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-EHVKNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E   + +   + N + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VAKGKYDGHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++  
Sbjct: 350 GESISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+             +   R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDINN----ICSAELRYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K +D +   ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVP---EYAKYKDNY--ELLWNIGNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGIMQKFIDQAISANTNYD-PSKQAGGKVPMKLLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           G+KT YY  +R   S  +  +   D
Sbjct: 725 GVKTLYYHNTRDGASDSQGDMAADD 749


>gi|294637128|ref|ZP_06715437.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089662|gb|EFE22223.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 760

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 208/800 (26%), Positives = 330/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TIIKAAADLISRETPDYQYMAARLAIFHLRKKAYGQF----------EPPKLY-DHVVRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDRHLLEDFSRDEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    RKI AV L+  M+  
Sbjct: 350 GGEITLFSPSDVPGLYDAFFADQNEFERLYVQYEQDSRIRQ----RKIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC E+         +N  S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEVALPTKPLEDVNDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHQLAREQGACPWFNETRYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DNYKKDL----DAICAEPLHYDWETLRADIVRDGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  L  +DG +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLQEAYELLWSLPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQA S N   D    PS     K+L      A+ +G
Sbjct: 681 ---------------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDAQEDL 745


>gi|238797462|ref|ZP_04640961.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238718733|gb|EEQ10550.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 761

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 198/806 (24%), Positives = 334/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAKEQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISDEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKEAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|330445622|ref|ZP_08309274.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489813|dbj|GAA03771.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 755

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 205/805 (25%), Positives = 336/805 (41%), Gaps = 81/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+  
Sbjct: 1   MTQQLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY E+    
Sbjct: 61  TIIKAAADLISEETPDYQYLAARLAIFHLRKKAYGQF----------EPPKLY-EHVKNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E   + +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VAKGKYDEHLLEDYTEEEFAVMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILIAAALFNKYPKETRLDYIKRFYDAASLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++  
Sbjct: 350 GENISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A++S    R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QGV PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYAQGVLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +   R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKQDI----DKICSAELRYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K ++ +   ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVP---EYAKYKENY--ELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQA S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGIMQKFIDQAISANTNYD-PSKQPGGKVPMKLLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           G+KT YY  +R   S  +  +   D
Sbjct: 725 GVKTLYYHNTRDGASDNQGDMAADD 749


>gi|261822456|ref|YP_003260562.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261606469|gb|ACX88955.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 761

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 204/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+  
Sbjct: 1   MNQSLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKSSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GEEITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ A++     R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICNEPLHLDWETLRNDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      ++  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLM 895
                                QK++DQA S N   D    PS     K+L      A+  
Sbjct: 681 ----------------LVGVMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDVQDDL 745


>gi|197285593|ref|YP_002151465.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|227356094|ref|ZP_03840484.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
 gi|194683080|emb|CAR43610.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis HI4320]
 gi|227163739|gb|EEI48651.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
          Length = 763

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 206/809 (25%), Positives = 335/809 (41%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+  
Sbjct: 1   MNHSLLVTKRDGHKERIDLDKIHRVITWAAEGLENVSVSQVELRSQIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            L+ ++  LI  E P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 61  TLVKAAADLISGETPDYQYLAARLAVFNLRKKAYGQF----------EPPALY-DHVKHL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   R L E     +   +   + ++RD  F Y  ++ L  +YF+   I G   E  
Sbjct: 110 VELGKYDRHLLEDYTKEEFEQMDKFIVHQRDMNFSYAAVKQLEGKYFVQNRITGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +      FYN +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLVAACLFSRYPKETRMDYIERFYNAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GQDITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    +  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D L    R AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIE-----NLDDLEELARLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +V      N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKSLDVLT----NEPLHYDWESLRKEIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  +   +G +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLKGAYELLWQMPSIEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK++DQA S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 726 VKTLYYHNTRDGAEDVQGDLEEVVETADS 754


>gi|259907949|ref|YP_002648305.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963571|emb|CAX55061.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
          Length = 761

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/801 (25%), Positives = 328/801 (40%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++     ++ P+                R 
Sbjct: 61  TIIKSAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     ++    ++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKL----RVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R   +  ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDNYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L      A+  
Sbjct: 681 ---------------LVGVMQKFVDQAISSNTNYD-PTRFANGRVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDSQDDL 745


>gi|261364562|ref|ZP_05977445.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567129|gb|EFC88689.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
          Length = 759

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   APTDLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             E+  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLF----------EHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + + RD  F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCSEPLLCDWESLRSDIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKD 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|255065943|ref|ZP_05317798.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
 gi|255049854|gb|EET45318.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
          Length = 759

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   APTDLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLF----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + + RD  F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPQETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCSEPLLCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKD 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|227871658|ref|ZP_03990073.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
 gi|227842500|gb|EEJ52715.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
          Length = 839

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 277/920 (30%), Positives = 432/920 (46%), Gaps = 130/920 (14%)

Query: 26  IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +  +Q +IKR      +   KI RA+ KAF++            Q+ +  L  +    L 
Sbjct: 1   MGAMQTIIKRGLLEEDYQGEKIERAMEKAFLSEGISVE------QEKLHFLLGKVEESLA 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPI 141
           + ++    V +E+IQ+ VE +LM +G +K+ R Y+LYRE+R+ +R  +   K    D  I
Sbjct: 55  EKHR----VSVEEIQNAVEEALMHNGDYKVARAYILYREKRTLLRHLRQRIKEEIGDNEI 110

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L+    D     ++  RL         G Q++S ++ L                   
Sbjct: 111 DDVLRRCQKDFP--DYDLARLSAKYLSLSKGEQELSKRLAL------------------- 149

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           L  ++  L   +EP + ++  R       +E+        +      +   Y +      
Sbjct: 150 LTRAAAELTTQEEPGWERIAGRLRSYHFHKELK-------KAEESRNLHSFYDKLVY-LT 201

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQA 319
           E+G+    + E     ++  LA  +   R+  F Y GL +L  RY +  +   + E PQ 
Sbjct: 202 EQGLYGAYILEHYSKEEVEELAKFIDQSRNDLFGYSGLDLLLSRYLIRDHQHVVLESPQE 261

Query: 320 FFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            ++ ++M LA+KE E   +   EFY+++S      +TPT  N+   + QLSSCF+ TVPD
Sbjct: 262 MYLGISMHLAMKEKENRLQYVKEFYDMMSLHQVTMATPTQSNARKPYHQLSSCFIDTVPD 321

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++ + A ++KY GG+G  +  VR  G  I G  G S GVI +++V NDTAVAV
Sbjct: 322 SLDGIYQSISKFADVSKYGGGMGMYFGKVRSRGGKIRGFEGASGGVIRWIRVVNDTAVAV 381

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL L+ N GDDR + HD+  A   PDLF K+V +  N
Sbjct: 382 DQLGMRQGAVAVYLDAWHKDLPEFLQLKTNNGDDRMKAHDVFPAVCYPDLFWKKVKEDLN 441

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W L  P ++       L D YG+E+E  YE+  R     +     K     L R +L 
Sbjct: 442 QEWYLMDPHDIFLVKGYCLEDFYGEEWETRYEDCVRDNRISKRVYVLK----DLVRLILK 497

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------------- 597
              ETG P+  ++D  N  +P +H G+++ SNLCTEI  N    E               
Sbjct: 498 SAVETGTPFAFYRDTVNRMNPNKHKGIIYCSNLCTEIAQNMKEAEICERKVVTKDGDEVI 557

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S+ L      NQ    +L    +T VR LDNVID+N + + +A+ 
Sbjct: 558 VSTVKPGDFVVCNLASLCLGNIPVENQ---PELERITKTVVRALDNVIDLNFYPVAEAEI 614

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG+ G+   L   HI + S E ++  D+  E I++ AI AS ELA+ERGAY
Sbjct: 615 TNKRYRAIGLGVSGYHHMLAKHHIAWESQEHLDFVDKVFENINYAAIKASSELAKERGAY 674

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S+F GS W+ G +               +    +   W+ LK+ V   G+RN+  +A AP
Sbjct: 675 SAFAGSEWESGEY--------------FSRRNYNSPRWESLKQEVHE-GIRNAWILATAP 719

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + + G S  +DP     +++         V                          
Sbjct: 720 TSSTSILIGTSAGLDPIMNRFFLEEKKGAILPRVAP------------------------ 755

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                   +  D    + +A ++D  W + +A  RQ+ IDQAQS N +  +E    +L  
Sbjct: 756 -------ELSMDTYWYYKSAHQMDQTWSVRAAGLRQRHIDQAQSFNFWITNEYKMSELLN 808

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS++
Sbjct: 809 LYTLAWECGVKTIYYVRSKA 828


>gi|313668431|ref|YP_004048715.1| ribonucleotide reductase I alpha chain [Neisseria lactamica ST-640]
 gi|313005893|emb|CBN87349.1| ribonucleotide reductase I alpha chain [Neisseria lactamica 020-06]
          Length = 759

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 203/800 (25%), Positives = 339/800 (42%), Gaps = 81/800 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + N
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   
Sbjct: 471 LGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYY 525

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID+ 
Sbjct: 526 LAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTY 585

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 586 KKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 641

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V                                    + LK  + 
Sbjct: 642 GLVTVKASKDGILKQVVPEF--------------------------------ETLKNAYE 669

Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLK 898
           T +++      ++     QK++DQA S N   D       + S K++      A+  G+K
Sbjct: 670 TLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVK 729

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY  +R      ++ ++ 
Sbjct: 730 TLYYHNTRDGADDTQADIQD 749


>gi|285803174|pdb|2X33|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803175|pdb|2X33|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803176|pdb|2X33|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662308|pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662309|pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662310|pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 202/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           +   +R      +  L
Sbjct: 730 FXQNTRDGAEDAQDDL 745


>gi|298368553|ref|ZP_06979871.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282556|gb|EFI24043.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 759

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   APTDLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLF----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + + RD  F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTIYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCSEPLLCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKD 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPSKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|310768142|gb|ADP13092.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 761

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/801 (24%), Positives = 328/801 (40%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++     ++ P+                R 
Sbjct: 61  TIIKSAADLISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEMGKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     ++    ++ A+ L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKL----RVKAIDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIES-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V         +R   +  ++ D+  +DG +            
Sbjct: 637 PPRGHISIKASKDGILRQVVPEY-----ERLKDNYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L      A+  
Sbjct: 681 ---------------LVGIMQKFVDQAISSNTNYD-PTRFANGRVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDSQDDL 745


>gi|238920520|ref|YP_002934035.1| ribonucleotide-diphosphate reductase subunit alpha [Edwardsiella
           ictaluri 93-146]
 gi|238870089|gb|ACR69800.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 760

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 208/800 (26%), Positives = 331/800 (41%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TIIKAAADLISRETPDYQYMAARLAIFHLRKKAYGQF----------EPPKLY-DHVVRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           IE G     L       +   + + + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 IEMGKYDTHLLTDFSRDEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D +  +   FE  Y  YE+     +    RKI AV L+  M+  
Sbjct: 350 SGEITLFSPSDVPGLYDAFFADQSQFERLYVQYEQDNSIRQ----RKIKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP   HV  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAHVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDL----DAICSEPLHYDWETLRTEIVRDGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  +  +DG +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLKDAYELLWAMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PS     K+L      A+ +G
Sbjct: 681 ---------------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 726 VKTLYYQNTRDGAEDMQEDL 745


>gi|261211024|ref|ZP_05925314.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
 gi|260839999|gb|EEX66599.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
          Length = 760

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/800 (25%), Positives = 326/800 (40%), Gaps = 81/800 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++    
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLF----------KHVTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                         +      QK++DQA S N   D  +        KKL      A+  
Sbjct: 678 -------------YLHLVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY  +R     E++ 
Sbjct: 725 GVKTLYYHNTRDGAKDEQTD 744


>gi|261400677|ref|ZP_05986802.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209587|gb|EEZ76042.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
          Length = 759

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/800 (25%), Positives = 339/800 (42%), Gaps = 81/800 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   R + E     +   L + + +ERD +F Y  ++ L  +Y +   +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNSYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + N
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A       + D+L       VR LD ++D   + +E A+ S    R++G+G++ +   
Sbjct: 471 LGALN-----NLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYY 525

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E + ++ + ASV LA+E GA + F  +++ QG  PID+ 
Sbjct: 526 LAKNGVRYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACTLFNQTVYSQGKLPIDTY 585

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 586 KKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 641

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V                                    + LK  + 
Sbjct: 642 GLVTVKASKDGILKQVVPEF--------------------------------ETLKNAYE 669

Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLK 898
           T +++      ++     QK++DQA S N   D       + S K++      A+  G+K
Sbjct: 670 TLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVK 729

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY  +R      ++ ++ 
Sbjct: 730 TLYYHNTRDGADDTQADIQD 749


>gi|226327850|ref|ZP_03803368.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
 gi|225203554|gb|EEG85908.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
          Length = 763

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 205/809 (25%), Positives = 335/809 (41%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+  
Sbjct: 1   MNHSLLVTKRDGHKERIDLDKIHRVIAWAAEGLENVSVSQVELRSQIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            L+ ++  LI    P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TLVKAAADLISGDTPDYQYLAARLAVFNLRKKAYGQF----------EPPKLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   R L E     +   + N + ++RD  F Y  ++ L  +YF+   I G   E  
Sbjct: 110 VDLGKYDRHLLEDYTQEEFEQMDNFIVHQRDMNFSYAAVKQLEGKYFVQNRITGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  +  +      FYN +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLVAACLFSRYPQATRMDYIERFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GQDITLFSPSDVPGLYDAFFADQDEFERLYVQYEKDKSIRQ----KQVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D L    R AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIE-----NLDDLEELARLAVRSLDALLDYQDYPILAAKQGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +V  +          W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKSLDVLTK----EPLHYDWEGLRKDIKEHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++  +   +G +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLKGAYELLWQMPSIEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK++DQA S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 726 VKTLYYHNTRDGADDVQGDLEEVVETEDS 754


>gi|238761951|ref|ZP_04622924.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238699679|gb|EEP92423.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 761

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 196/806 (24%), Positives = 334/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  A++     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKDAYELLWEMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GVKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|294669613|ref|ZP_06734680.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308526|gb|EFE49769.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 759

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 197/791 (24%), Positives = 333/791 (42%), Gaps = 81/791 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   SIKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  +  + 
Sbjct: 66  KAAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLF----------DHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   R + E     +   L   + + RD  F Y  ++ L  +Y +   +     E PQ  
Sbjct: 115 GKYDRHIIEDYSQEEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + N
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +   
Sbjct: 471 LGALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYY 525

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+ 
Sbjct: 526 LAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTY 585

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 586 KKDL----DAVCSEPLLCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 641

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V                                    + LK  + 
Sbjct: 642 GLVTVKASKDGILKQVVPEF--------------------------------ETLKDAYE 669

Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLK 898
           T +++      ++     QK++DQ+ S N   D       + S K++      A+  G+K
Sbjct: 670 TLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPSKFEGNKVSMKQMLKDLLTAYKYGVK 729

Query: 899 TTYYLRSRSAT 909
           T YY  +R   
Sbjct: 730 TLYYHNTRDGA 740


>gi|183599609|ref|ZP_02961102.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
 gi|188021859|gb|EDU59899.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
          Length = 763

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 203/810 (25%), Positives = 328/810 (40%), Gaps = 81/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGHKERIDLDKIHKVITWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI    P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TMIKAAADLITGDTPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-KHVTRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLEDYSQEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSHYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +     EFE  Y  YE+     +      + AV L+  M+  
Sbjct: 350 NQDITLFSPSDVPGLYDAFFADQDEFERLYLAYEQDDSIRKS----SVKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L      AVR LD ++D   + I  AKK     R +G+G++ +
Sbjct: 466 AFNLGAIE-----NLDELEELAVLAVRALDALLDYQDYPIIAAKKGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKELDKLTD----EPLHYDWETLRKDIQQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V     N       LW       +  + G +           
Sbjct: 637 PPRGYISIKASKDGILRQVVPDYENLKGAYELLW------QMPSNSGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK++DQ+ S N   D     +GK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFVDQSISANTNYDPTRFATGKVPMNQLLKDLLLAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           G+KT YY  +R      +  L+ V    ++
Sbjct: 725 GVKTLYYHNTRDGAEDVQGDLEEVVESADS 754


>gi|325265978|ref|ZP_08132664.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982616|gb|EGC18242.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
          Length = 758

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 205/797 (25%), Positives = 330/797 (41%), Gaps = 79/797 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   N  ++  +++ A +GL +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRDGRLEPINLDKIHRVLDWAAAGLDNVSVSQVELKSHIQFYNGIRTEDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR+      Y+ P             ++  R  E 
Sbjct: 65  KSAADLISEETPDYQYLAARLAIFHLRKIAYGE-YQPPHLF----------DHVRRMTEM 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD  F Y  ++ L  +Y +   +     E PQ  
Sbjct: 114 GKYDRHILEDYSKEEFDELNQYINHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 174 YILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKNQN 353

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+     E    R +SA  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQD----ESIRKRTLSASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  ++   D CN  SP    V  V  SNLC EI         +N  + E A+C L + N
Sbjct: 410 TGRVYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 469

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A       D ++       AVR LD ++D   + I  A K+    R +G+G++ +   
Sbjct: 470 LGAI-----SDLNEFEPLADLAVRALDALLDYQDYPIPAAYKATMNRRTLGIGVINYAYY 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E + +H + AS+ LA+E GA   F  + + QG+ PID+ 
Sbjct: 525 LAKNGVKYSDGSAINLTHRTFEAMQYHLLKASMNLAKEYGACPLFNETTYAQGILPIDTY 584

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +   +   +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 ----KADLDKFCDEPLHLDWEGLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 640

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V         +R       +  +  +DG                 
Sbjct: 641 GLVTVKASKDGILKQVVPEF-----ERLKGQYETLWQMGGNDG----------------- 678

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKT 899
                     ++     QK+ DQA S N   D    +       ++      A+  G+KT
Sbjct: 679 ---------YLKLVGIMQKFTDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKT 729

Query: 900 TYYLRSRSATSVEKSTL 916
            YY  +R      +  L
Sbjct: 730 LYYHNTRDGADDVQQDL 746


>gi|289526572|pdb|2X5B|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526573|pdb|2X5B|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526574|pdb|2X5B|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662315|pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662316|pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662317|pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 202/796 (25%), Positives = 332/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
            +  +R      +  L
Sbjct: 730 XFQNTRDGAEDAQDDL 745


>gi|288562861|pdb|2X3I|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562862|pdb|2X3I|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562863|pdb|2X3I|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662322|pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662323|pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662324|pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 202/796 (25%), Positives = 331/796 (41%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L
Sbjct: 470 GAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 641 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTT 900
                           QK+IDQ+ S N   D    PSGK    +L      A+  G+KT 
Sbjct: 681 -----------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
               +R      +  L
Sbjct: 730 XAQNTRDGAEDAQDDL 745


>gi|149197801|ref|ZP_01874850.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139022|gb|EDM27426.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 755

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 203/806 (25%), Positives = 335/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +++   DGT    + +++  +++ A   L  VS   V   ++   +DG++  D+  
Sbjct: 1   MTSNIQVTKRDGTREPIDLEKIHRVIDWAAKDLNHVSVSQVELRSHVQFHDGVTTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++        P             E+  + 
Sbjct: 61  TMIKSAADLISEESPDYQYLAARLAIFHLRKKAYGQFDPPP-----------LFEHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E   + +   + N L + RD  F Y  ++ L  +Y +   + G+  E P
Sbjct: 110 VEDGKYDKHLIEDYTEDEFNEMENALDHWRDLNFSYAAVKQLEGKYLVQNRVTGAIYESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V   L  K  ++ +    + FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVGACLFSKYPKETRMDYIIRFYDAASNFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  +            G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINASSSAIVKYVSQRAGIGLNAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH +VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHREVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYERLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + ++   FE  Y  YE             + A+ L+    + 
Sbjct: 350 KGNITLFSPGDVPGLYDAFFEDQEKFEELYIKYENDPSI----QKETMKAIELFSLFASE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  SP Q  V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFQADVAPIRQSNLCLEIALPTKPLEHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL A  +      D++      AVR LD+++D   + +  A+ S+   R +G+G++ F
Sbjct: 466 AINLGALES-----LDEMEELTELAVRALDSLLDYQDYPVPAARNSSLNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y++  A  +  ++ E + +H I AS +LAQE G    F  + + QG+ P 
Sbjct: 521 AYYLAKNGVFYSNGSANNLVHKTFESLQYHLIKASCKLAQELGPCPKFNETTYSQGIMPT 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +       N    L WD+LK+ VK  GMRNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKSSVDDF----CNEDLHLDWDQLKEDVKKHGMRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK +  G    V   +       +L                  + ++P++   
Sbjct: 637 PPRGLIAVKQSKDGILKQVVPEIEKYKSYYEL------------------LWQMPNNTGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
           +             +  +  QK+IDQ  S N   D PS         K L      A+  
Sbjct: 679 L-------------QLVAIMQKFIDQTISANTNYD-PSKFEGNMVPMKTLLTDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +    G  G
Sbjct: 725 GVKTLYYHNTRDGAGDSQEEDDGCAG 750


>gi|218709926|ref|YP_002417547.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           splendidus LGP32]
 gi|218322945|emb|CAV19122.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           splendidus LGP32]
          Length = 760

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 327/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLSVFHLRKKAYGE----------YEPPALY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L E     +   L   + ++RD  F Y  ++ L  +YF+   +     E  
Sbjct: 110 VDMGKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFENQERFEELYVKYENDP----SVKRETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D LA      VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIN-----ELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +N        +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFLNLKN-----NYELLWNIGNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         K+L      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSVYDSGKVPMKQLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|86148465|ref|ZP_01066755.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85833762|gb|EAQ51930.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 760

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 327/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLSVFHLRKKAYGE----------YEPPALY-DHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L E     +   L   + ++RD  F Y  ++ L  +YF+   +     E  
Sbjct: 110 VDMGKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFENQERFEELYVKYENDP----SVKRETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D LA      VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIN-----ELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCEEPLHYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +N        +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFLNLKN-----NYELLWNIGNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         K+L      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSVYDSGKVPMKQLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|253989036|ref|YP_003040392.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780486|emb|CAQ83648.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Photorhabdus
           asymbiotica]
          Length = 763

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 203/809 (25%), Positives = 334/809 (41%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +V  A  GL++VS   V   +    YD +  SD+  
Sbjct: 1   MNHSLLVTKRDGHKERIDLDKIHRVVAWAADGLKNVSVSQVELRSQIQFYDSIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TMIKAAADLISGDAPDYQYLAARLAIFNLRKKAYGQF----------EPPALY-DHVSRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLADYSKEEFEQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSSYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R +G+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSAIVKYVSQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ ++  +    +++ AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFTNQDEFERLYTKYEQDSNIRQ----QRLKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ +
Sbjct: 466 AFNLGAIE-----NLDELEELAILAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + QG+ PI
Sbjct: 521 AYYLAKHGARYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DTYKKTL----DTLTNEPLHYDWETLRSDIKQYGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R   D  ++  +  +DG +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----ERLKGDYELLWQMPGNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPARFPSGKVPMNQLLKDLLLAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 726 VKTLYYHNTRDGAEDVQDDLEEVVESADS 754


>gi|50120138|ref|YP_049305.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610664|emb|CAG74109.1| ribonucleoside-diphosphate reductase 1 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 761

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 205/801 (25%), Positives = 331/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+  
Sbjct: 1   MNQSLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P   TH              
Sbjct: 61  TIIKAAADLISRESPDYQYLAARLAIFHLRKKAYGQ-FEPPALLTH----------VTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDKHLLEDYSAEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSGYPRETRMDYVKRFYDAISMFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I A  L+  M+  
Sbjct: 350 GEEITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKASELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I+ A++     R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA + F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACTWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICNEPLHLDWETLRKDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V   +   +     LW      ++  +DG +           
Sbjct: 637 PPRGHISVKASKDGILRQVVPEYETLKDAYELLW------EMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PS----GKKLDFIYRQAWLM 895
                                QK++DQA S N   D    PS     K+L      A+  
Sbjct: 681 ----------------LVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 725 GVKTLYYQNTRDGAEDVQDDL 745


>gi|312885177|ref|ZP_07744857.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367190|gb|EFP94762.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 760

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 330/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             E+  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLF----------EHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + + E     +LV L + + ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VESGKYDKHILEDYTQAELVELDSFIDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKHNRLSYIKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHGESRALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + ++   FE  Y  YE      +      + A+ L+  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFEDQDKFERLYVQYEND----DTVKKETVKAIELFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSQVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D  A      VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDFAELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASV LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYHLLKASVNLAKEQGKCPLFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDT----DSICDEPLHYDWDSLREEIVEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V        +     +  ++ D+  +DG              
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEFSEYKE-----NYELLWDIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D P+         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PTRFESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|241760524|ref|ZP_04758617.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
 gi|241319028|gb|EER55530.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
          Length = 759

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/790 (25%), Positives = 332/790 (42%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   IKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  +  E G
Sbjct: 67  AAADLISQDTPDYQYLAARLAIFHLRKIAYGE-FEPPHLY----------DHVKKLTEAG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R +       +   L   + + RD  F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 116 KYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++     T
Sbjct: 356 TLFSPNEVPSLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 412 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 471

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L
Sbjct: 472 GALNS-----LDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYL 526

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+  
Sbjct: 527 AKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYK 586

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   +      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 587 KDL----DAVCSEPLLCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK ++ T
Sbjct: 643 LVTVKASKDGILKQVVPEF--------------------------------ETLKDVYET 670

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQA S N   D       + S K++      A+  G+KT
Sbjct: 671 LWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKT 730

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 731 LYYHNTRDGA 740


>gi|120598754|ref|YP_963328.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           W3-18-1]
 gi|120558847|gb|ABM24774.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. W3-18-1]
          Length = 762

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 337/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +  
Sbjct: 1   MNSTITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPALY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGAIK-----ELSELERLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMRYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++  +  +DG +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-----DTLKDNYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNLEKEDD 753


>gi|262402401|ref|ZP_06078962.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
 gi|262351183|gb|EEZ00316.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
          Length = 760

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 199/800 (24%), Positives = 325/800 (40%), Gaps = 81/800 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++    
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGE-YEPPTLF----------KHVTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +S          E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 466 AFNLGAIQS-----LDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW      ++  +DG             
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTRFKENYELLW------NIGSNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                         +      QK++DQA S N   D  +        KKL      A+  
Sbjct: 678 -------------YLHLVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+KT YY  +R     E++ 
Sbjct: 725 GVKTLYYHNTRDGAKDEQTD 744


>gi|212635282|ref|YP_002311807.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           piezotolerans WP3]
 gi|212556766|gb|ACJ29220.1| Ribonucleoside-diphosphate reductase [Shewanella piezotolerans WP3]
          Length = 801

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 201/815 (24%), Positives = 344/815 (42%), Gaps = 81/815 (9%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            +  ++  + +   + +    G   + +  ++  ++E A  GL +VS   V   ++   +
Sbjct: 30  HKYKNQGLSLMNSNMTVTKRSGERETIDLDKIHRVIEWAAKGLTNVSVSEVELRSHLQFF 89

Query: 191 DGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           +G+    +   +I ++  LI  E P+Y  + AR  +  LR++               E  
Sbjct: 90  EGIPTEAIHETIIKAAADLISPEAPDYQFLAARLAIFHLRKKAFGQF----------EPP 139

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-- 307
            LY ++  + IE G     + E     ++  L   + + RD  F Y  ++ L  +Y +  
Sbjct: 140 KLY-DHVVKLIELGKYDAHILEDYSREEIDILGGYIDHWRDMNFSYAAVKQLEGKYLVQN 198

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            ++    E  Q  ++ VA  L  K  ++ +     +FY+  S+F     TP +    T  
Sbjct: 199 RVSHEIYESAQFLYILVAACLFAKYPKETRLKYIKDFYDATSTFKISLPTPIMAGVRTPT 258

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            Q SSC L    D L  I               G+G +   +R LG+ I G      G +
Sbjct: 259 RQFSSCVLIECGDSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCL 318

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           PF K       + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    I
Sbjct: 319 PFYKYFQTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRIRHLDYGVQI 378

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISA 542
             L  +R+ Q    +LFSP +V  ++D +    +EFE  Y  YE      E    +++ A
Sbjct: 379 NKLMYQRMIQGGMISLFSPSDVPGMYDAFFEDQEEFERLYLKYEAD----ESIRKQQVKA 434

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSS 593
           V L+  M+     TG  +I   D CN  SP    V  V  SNLC EI         +N  
Sbjct: 435 VELFSLMMQERASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDP 494

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E A+C L ++NL A       + ++L      AVR LDN++D   + I  A+K++   
Sbjct: 495 DGEIALCTLSALNLGAIK-----NLEELEPLADLAVRALDNLLDYQDYPIISAEKASMNR 549

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G++ F + L    + Y+   A  I  ++ E I ++ + AS  LA+E+GA  SF  
Sbjct: 550 RTLGIGVINFANYLAKEGVRYSDGSANSITHKTFEAIQYYLLKASNNLAKEQGACPSFHE 609

Query: 714 SLWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           + + +G+ PID+    L ++ DE        + W+ L++ +KT G+RNS   A+ P+ T 
Sbjct: 610 TTYSKGILPIDTYKRDLDKICDE-----PLHMDWESLREEIKTHGLRNSTVSALMPSETS 664

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   +  I+P    + VK++  G    V          +  +   ++  +  +DG   
Sbjct: 665 SQISNATNGIEPPRGLISVKASKDGQLKQVVPDF-----DKYQYSYELLWQMPNNDG--- 716

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKL 885
                                   I+     QK++DQ+ S N   D       +   K L
Sbjct: 717 -----------------------YIQLVGLMQKFVDQSISANTNYDPGRFPDGKVPMKVL 753

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
                 A+  G+KT YY  +R   S     +  ++
Sbjct: 754 LKDLLTAYKYGVKTLYYHNTRDGASDSHDDITAIE 788


>gi|309379221|emb|CBX22178.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica Y92-1009]
          Length = 759

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 203/800 (25%), Positives = 338/800 (42%), Gaps = 81/800 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +    
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTGA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + N
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   
Sbjct: 471 LGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYY 525

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID+ 
Sbjct: 526 LAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTY 585

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 586 KKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 641

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V                                    + LK  + 
Sbjct: 642 GLVTVKASKDGILKQVVPEF--------------------------------ETLKNAYE 669

Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLK 898
           T +++      ++     QK++DQA S N   D       + S K++      A+  G+K
Sbjct: 670 TLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVK 729

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY  +R      ++ ++ 
Sbjct: 730 TLYYHNTRDGADDTQADIQD 749


>gi|37679428|ref|NP_934037.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus YJ016]
 gi|37198172|dbj|BAC94008.1| ribonucleotide reductase, alpha subunit [Vibrio vulnificus YJ016]
          Length = 767

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/800 (25%), Positives = 327/800 (40%), Gaps = 79/800 (9%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           ++ +  +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++ SD
Sbjct: 5   ESRMNQQLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSD 64

Query: 198 LETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +   +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++ 
Sbjct: 65  IHETIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHV 113

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRI 314
            R ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   
Sbjct: 114 ARLVDMGKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIY 173

Query: 315 EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E  Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC 
Sbjct: 174 ESAQFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCV 233

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L    D L  I               G+G +   +R LG+ I G      G IPF K   
Sbjct: 234 LIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQ 293

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                 +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R
Sbjct: 294 TAVKCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQR 353

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           + +    TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  +
Sbjct: 354 LVEGGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPSI----KKETVKALEMFTLL 409

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVC 600
           +     TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C
Sbjct: 410 MQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIALC 469

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L + NL A         D L       VR LD ++D   + +  A KS    R +G+G+
Sbjct: 470 TLSAFNLGAINT-----LDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           + +   L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+
Sbjct: 525 INYAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGL 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            PID+         +L  +      WD L+  +   G+RNS   A+ P+ T + I   + 
Sbjct: 585 MPIDTYKKDI----DLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATN 640

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P    + VK++  G    V    +         +  ++ ++  +DG           
Sbjct: 641 GIEPPRGYVSVKASKDGILKQVVPDFIELKN-----NYELLWNIGSNDG----------- 684

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAW 893
                           +      QK++DQA S N   D           KKL      A+
Sbjct: 685 ---------------YLHLVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAY 729

Query: 894 LMGLKTTYYLRSRSATSVEK 913
             G+KT YY  +R     E+
Sbjct: 730 KFGVKTLYYHNTRDGAKDEQ 749


>gi|254230293|ref|ZP_04923682.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262393880|ref|YP_003285734.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha
           [Vibrio sp. Ex25]
 gi|151937190|gb|EDN56059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262337474|gb|ACY51269.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio sp. Ex25]
          Length = 760

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 200/798 (25%), Positives = 324/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLH----------DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   + ++RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSI----KKETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVELAKEQGKCPSFDETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTE-----LKDNYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     E+
Sbjct: 725 GVKTLYYHNTRDGAKDEQ 742


>gi|91227185|ref|ZP_01261644.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269967068|ref|ZP_06181136.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
 gi|91188713|gb|EAS75001.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269828327|gb|EEZ82593.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
          Length = 760

 Score =  602 bits (1552), Expect = e-169,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 323/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSI----KKETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFDETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                 ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTE-----LKDSYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     E+
Sbjct: 725 GVKTLYYHNTRDGAKDEQ 742


>gi|167623962|ref|YP_001674256.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           halifaxensis HAW-EB4]
 gi|167353984|gb|ABZ76597.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 762

 Score =  602 bits (1552), Expect = e-169,   Method: Composition-based stats.
 Identities = 205/813 (25%), Positives = 347/813 (42%), Gaps = 83/813 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++E A  GL +VS   V   ++   +DG++   +  
Sbjct: 1   MNSNMTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPEAPDYQFLSARLAVFHLRKKAFGQF----------EPPKLY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G     + E     +L  L   + + RD  F Y  ++ L  +Y +   ++    E  
Sbjct: 110 VEQGKYDAHILEDYSQEELDILDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +     +FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLKYVKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    I  +  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRVRHLDYGVQINKVMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D + +   EFE  Y  YE      +    ++I AV L+  M+  
Sbjct: 350 GGMISLFSPSDVPGMYDAFFEDQQEFERLYLKYEADDSIRK----KQIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A         D+L      AVR LDN++D   + I  AKK++   R +G+G++ F
Sbjct: 466 ALNLGAIKK-----LDELEPLADLAVRALDNLLDYQDYPIISAKKASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I F+ + AS++LAQE+GA  +F  + + +G+ PI
Sbjct: 521 ANYLAKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAQEQGACPAFHETTYAKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L W+ L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V         ++  +   ++  +  +DG +           
Sbjct: 636 EPPRGLISVKASKDGQLKQVVPDF-----EKYQYSYELLWQMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK++DQ+ S N   D P+         K L      A+ 
Sbjct: 681 ----------------LVGLMQKFVDQSISANTNYD-PTRFEGGRVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            G+KT YY  +R   S     +  ++ + ++  
Sbjct: 724 YGVKTLYYHNTRDGASDSLDDITAIEKEDDSCA 756


>gi|117920414|ref|YP_869606.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           ANA-3]
 gi|117612746|gb|ABK48200.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. ANA-3]
          Length = 762

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 194/808 (24%), Positives = 344/808 (42%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +  
Sbjct: 1   MNSNMTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPKLY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  + + + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDIMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + + AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----NLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICSEPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     +ELK    ++  ++  +  ++G +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNIEKEDD 753


>gi|27366310|ref|NP_761838.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus CMCP6]
 gi|320156820|ref|YP_004189199.1| ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Vibrio vulnificus MO6-24/O]
 gi|27362511|gb|AAO11365.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           vulnificus CMCP6]
 gi|319932132|gb|ADV86996.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 760

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 200/797 (25%), Positives = 325/797 (40%), Gaps = 79/797 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQAEFERLYVKYENDPSI----KKETVKALEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L       VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAINT-----LDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +         +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFIELKN-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMG 896
                        +      QK++DQA S N   D           KKL      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEK 913
           +KT YY  +R     E+
Sbjct: 726 VKTLYYHNTRDGAKDEQ 742


>gi|313887772|ref|ZP_07821454.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846381|gb|EFR33760.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 842

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/913 (30%), Positives = 444/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+     FD  KI  AI KAF +V          V  +I          LL++  
Sbjct: 1   MKILKRDKREVDFDHLKIKNAIEKAFDSVGK------SYVDSVINAYALDIKETLLKNYD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQD VE  L+     ++ + Y+LYR   S+ R       +       LKI+
Sbjct: 55  PKNPPTVEEIQDLVELKLIDEKEIEVVKAYILYRNRHSEERQILDKFANYITDDKVLKIL 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                  +++ K+ E  +E      +    K    + Y +             +I ++  
Sbjct: 115 K--FVRKTYDPKKYE--LENLYKKFESFVKKDQSQDAYLS------------EIIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L +K+ P +  + A FL   L +++   + +        ++   Y E      E+G+  +
Sbjct: 159 LTDKDAPRWEFIAALFLNYDLEKKIKANLEE-------FKINNFY-EKIVFLTEKGLYGK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + E+    D++ L + +   R+    Y GL +L  RY +  +  R +E  Q  FM +AM
Sbjct: 211 YILENYSKEDILELEDYIDNSRNRLLNYSGLDLLIKRYVIRSHDGRFVESIQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E  +   A +FY++ SS     +TPT+ N+   + QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKNRIYWAKKFYDIYSSLKVTVATPTMSNARKPYNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 IDNFAQISKHGGGMGLYFGKVRATGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  A   P+LF +   +  NA W +F P
Sbjct: 391 SVACYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAISYPNLFFELAEKDINATWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D YGKE+E  Y    R+    E    R++S   L R ++  L ETG P
Sbjct: 451 HEVLAKKGYSLEDFYGKEWEEKY----RECIEDESISRREMSVKDLVRLIIKSLTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------------------- 597
           +  ++D  N  +P +HVG+++SSNLCTEI  N S+ ET                      
Sbjct: 507 FAFYRDNVNEMNPNKHVGMIYSSNLCTEIMQNMSAIETLDTTIETEDGDEVIVTKTKPGD 566

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L         D  +L   + T VR LDNVID+N + I  AK +N  +R+I
Sbjct: 567 FVVCNLASLVLGNIDLE---DDKELKDIVATTVRALDNVIDLNYYPIPYAKVTNRKYRSI 623

Query: 657 GLGLMGFQSALHLLHIPYAS-PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+  AL    + ++   + ++ AD+  E I+FHA++AS+E+A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHALVKAGMAFSDIEDHLKWADDLYERINFHAVTASMEIAKEKGSYDFFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G +                +       W++L++ VK  G+RN   MAIAPT + + I
Sbjct: 684 WENGNY--------------FDLRDYKDAKWNKLREEVKANGLRNGYIMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              S  +DP     +++         +   +  +L  +  W                   
Sbjct: 730 AATSAGVDPIMNRYFLEEKKG----SILPRVAPDLTPQSFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWL 894
                   ++  A E+D  ++IE+A+ RQ+ IDQAQS+N Y+    + +K+  +Y +A  
Sbjct: 767 --------LYENAHELDQNFVIEAAAIRQRHIDQAQSINFYITTDFTMRKILNLYIKAAK 818

Query: 895 MGLKTTYYLRSRS 907
             LK+ YY+RS+S
Sbjct: 819 EKLKSVYYVRSKS 831


>gi|261377766|ref|ZP_05982339.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146055|gb|EEZ72473.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
          Length = 759

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEPIDLDKIHRVVTWAADGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGD-FEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + + RD AF Y  ++ L  +Y +   +     E P
Sbjct: 112 TDSGKYDRHIIEDYSREEFDELNAYIDHGRDMAFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALN-----NLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|113970254|ref|YP_734047.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-4]
 gi|113884938|gb|ABI38990.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-4]
          Length = 762

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 194/808 (24%), Positives = 343/808 (42%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +  
Sbjct: 1   MNSNMTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPKLY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + + AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----NLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICSEPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     +ELK    ++  ++  +  ++G +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNIEKEDD 753


>gi|254507982|ref|ZP_05120110.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219549090|gb|EED26087.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 760

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/798 (24%), Positives = 330/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLEKIHRVIAWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           I+ G   + + E     +L  L   + + RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 IDMGKYDQHILEDYTKAELDELDAYIDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP----SVKKETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTEYKE-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D P+         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PTRFESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|157961885|ref|YP_001501919.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           pealeana ATCC 700345]
 gi|157846885|gb|ABV87384.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           pealeana ATCC 700345]
          Length = 762

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 203/813 (24%), Positives = 348/813 (42%), Gaps = 83/813 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++E A  GL +VS   V   ++   +DG++   +  
Sbjct: 1   MNSNMTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLSARLAVFHLRKKAFGQF----------EPPKLY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           IE G   + + E     ++  L + + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 IELGKYDQHILEDYSQEEIDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +     +FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLQYVKDFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    I  +  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKVMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +    +EFE  Y  YE      +    ++I AV L+  M+  
Sbjct: 350 GGMISLFSPSDVPGMYDAFFEDQEEFERLYLKYEADDSIRK----KQIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A         ++L      AVR LDN++D   + I  A+K++   R +G+G++ F
Sbjct: 466 ALNLGAIKK-----LEELEPLADLAVRALDNLLDYQDYPIISAQKASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I F+ + AS++LA+E+GA  +F  + + +G+ PI
Sbjct: 521 ANYLAKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAKEQGACPAFHETTYSKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L W+ L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V         ++  +   ++  +  +DG +           
Sbjct: 636 EPPRGLISVKASKDGQLKQVVPDF-----EKYQYSYELLWQMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK++DQ+ S N   D PS         K L      A+ 
Sbjct: 681 ----------------LVGLMQKFVDQSISANTNYD-PSRFEGGRVPMKVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            G+KT YY  +R   S     +  ++ + ++  
Sbjct: 724 YGVKTLYYHNTRDGASDSHDDITAIEKEDDSCA 756


>gi|114047557|ref|YP_738107.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-7]
 gi|113888999|gb|ABI43050.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-7]
          Length = 762

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 194/809 (23%), Positives = 344/809 (42%), Gaps = 81/809 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +  
Sbjct: 1   MNSNMTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPKLY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + + AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----NLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +  ++ E I F+ + AS+ LA+E+ A   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQDACPLFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICSEPLHLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     +ELK    ++  ++  +  ++G +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         + L      A+ +
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYD-PTRFEGRKVPMQTLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           G+KT YY  +R   S +   +  ++ + +
Sbjct: 725 GVKTLYYHNTRDGASDQHDDITNIEKEDD 753


>gi|319426319|gb|ADV54393.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           putrefaciens 200]
          Length = 762

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 337/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +  
Sbjct: 1   MNSTITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPALY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDLMNTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGAIK-----ELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++  +  +DG +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-----DTLKDNYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNLEKEDD 753


>gi|325578587|ref|ZP_08148687.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159823|gb|EGC71953.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 756

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/798 (24%), Positives = 332/798 (41%), Gaps = 79/798 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + A  
Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L++ +  +   FE  Y  YE+  +  +    R + AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L
Sbjct: 470 -----GKLDDLDELENLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ PID+  
Sbjct: 525 AKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +   +          W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 NDIDSLTQ----EPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++ +K++  G    V     N        +  ++ D+  +DG                  
Sbjct: 641 HVSIKASKDGILKQVVPDYEN-----LSDNYELLWDIPSNDG------------------ 677

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTT 900
                    +      QK++DQA S N   D    +        L      A+  GLKT 
Sbjct: 678 --------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTL 729

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      +  L  
Sbjct: 730 YYQNTRDGAEDSQEDLDD 747


>gi|59711809|ref|YP_204585.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio fischeri
           ES114]
 gi|59479910|gb|AAW85697.1| ribonucleoside diphosphate reductase 1, alpha subunit [Vibrio
           fischeri ES114]
          Length = 758

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 206/805 (25%), Positives = 330/805 (40%), Gaps = 79/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+  
Sbjct: 1   MTQQLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TIIKAAADLISEDTPDYQYLAARLSVFHLRKKAYGQ-FEPPTLFNH----------VLNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           IE G   + + E     +   +   + + RD  F Y  ++ L  +YF+   + G+  E  
Sbjct: 110 IELGKYDKHIVEDYTQEEFALMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKDTRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  YE YE+            + A+ L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A     +            AVR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIEKLEEL-----EELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDI----DAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     N        +  ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVPDFANLKN-----NYELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKK----LDFIYRQAWLMG 896
                               QK++DQA S N   D   +P+GK     L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           LKT YY  +R   S  +  L   D 
Sbjct: 726 LKTLYYHNTRDGASDSQDDLGQDDD 750


>gi|323494791|ref|ZP_08099890.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
 gi|323310984|gb|EGA64149.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
          Length = 760

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 198/798 (24%), Positives = 329/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVARL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDEYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSI----KKETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL +  +      D         VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGSIKS-----LDDFEELSNLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFDETNYAKGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DLICDEPLHYDWDGLRQEIMTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTEY-----KDNYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D P+         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PTRFESGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|325130343|gb|EGC53109.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis OX99.30304]
 gi|325136203|gb|EGC58811.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M0579]
 gi|325208253|gb|ADZ03705.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 759

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|146293169|ref|YP_001183593.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           putrefaciens CN-32]
 gi|145564859|gb|ABP75794.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella putrefaciens CN-32]
          Length = 762

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 337/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +  
Sbjct: 1   MNSTITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPALY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGAIK-----ELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++  +  +DG +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-----DTLKDNYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNLEKEDD 753


>gi|28898708|ref|NP_798313.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839544|ref|ZP_01992211.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363693|ref|ZP_05776477.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879740|ref|ZP_05892095.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898786|ref|ZP_05907227.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901599|ref|ZP_05909994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806926|dbj|BAC60197.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746925|gb|EDM57913.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086602|gb|EFO36297.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093358|gb|EFO43053.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108672|gb|EFO46212.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113387|gb|EFO50927.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|328474727|gb|EGF45532.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus 10329]
          Length = 760

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 195/798 (24%), Positives = 325/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLDKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLF----------DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L + + ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDQHILEDYSKAELDELDSYIDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDP----SVKKETVKAIEMFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLICDEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTELKN-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|238751210|ref|ZP_04612704.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238710484|gb|EEQ02708.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 761

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 197/806 (24%), Positives = 332/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P+   H            + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQ-FEPPKLFAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VDMGKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+  
Sbjct: 350 GDDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIDS-----LDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAISDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPEY-----ERLKEAYELLWDMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D P+         K+L       +  
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PTRFPSGKVPMKQLLKDLLTTYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      +  ++   G
Sbjct: 725 GIKTLYYQNTRDGADDVQEDIQSQPG 750


>gi|94676899|ref|YP_588830.1| ribonucleotide-diphosphate reductase subunit alpha [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220049|gb|ABF14208.1| ribonucleoside-diphosphate reductase, alpha subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 760

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/802 (24%), Positives = 333/802 (41%), Gaps = 81/802 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++  L +   DG     N  ++  ++  A  GL++VS   V   ++   YDG+  SD+  
Sbjct: 1   MSQSLLVTKRDGRKEPINLDKIHRVINWAADGLENVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++   T           E   LY ++  R 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAVLHLRKKAYGTF----------EPPTLY-DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKMGKYDQHLLKDYSFEEFTQMDKFINHWRDMDFAYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      T +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSSYPRTNRLDYIRRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R +G+ I G      G IPF K      
Sbjct: 230 CGDSLNSINATSSAIVKYVSRRAGIGINAGRIRAIGSQIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+  
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGIETNRVRYMDYGVQINKLMYQRLVN 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +  +   FE  Y  YE+     +    R I AV L+  M+  
Sbjct: 350 NDQITLFSPSDVPGLYDAFFADQNKFEQLYCQYEKDVSIRK----RSIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP   +V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYVQHVDHCNNHSPFDVNVAPIRQSNLCLEIILPTKPIEDINEENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL    +      D        AVR LD ++D   + +  A++     R +G+G++ +
Sbjct: 466 ALNLGTINS-----LDDFEELTMLAVRALDALLDYQSYPLTSAQRGALNRRPLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASNKLAKERGACPWFHETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DSIVSEPLHYDWESLRKDIKKSGLRNSTLSAMMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +K++ +G    V    V        LW                    +P++  
Sbjct: 637 PPRGHVSIKASKNGILRQVVPESVRLHNAYEFLW-------------------DMPNNNG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPS----GKKLDFIYRQAWLM 895
            +H                  QK++DQ+ S N   D    P      K+L      A+  
Sbjct: 678 YLH-------------LVGVMQKFVDQSISANTNYDPSRYPYGKVPMKQLLKDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEKSTLK 917
           G+KT YY  +R      +  ++
Sbjct: 725 GIKTLYYQNTRDGAKETQEDIQ 746


>gi|294787789|ref|ZP_06753033.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294484082|gb|EFG31765.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 758

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 201/799 (25%), Positives = 332/799 (41%), Gaps = 79/799 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   +G L   N  ++  +++ A  GL +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRNGQLEPINLDKIHRVLDWAAEGLNNVSVSQVELKSHIQFYNGIHTKDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR+      Y  P             ++  + +  
Sbjct: 65  KSAADLISEETPDYQYLAARLAIFHLRKIAYGD-YTPPHLF----------DHVNKLVAS 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G   + L     + +   L   + +ERD  F Y  ++ L  +Y +   +     E PQ  
Sbjct: 114 GKYDKHLLSDYTESEFNELNQYIDHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L  K  +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 174 YILVAMCLFAKYPQTTRLDYVKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 NLDSINATTSAIVKYVSQRAGIGINAGHIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINRLLYTRLIKNQN 353

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+     E    R ++A  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQ----TESIRKRTVAASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L + N
Sbjct: 410 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 469

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A       D ++       AVR LD ++D   + +  AKK+    R +G+G++ +   
Sbjct: 470 LGAIT-----DVNEFEPLADLAVRALDALLDYQDYPVLAAKKATMNRRTLGIGVINYAYY 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E + ++ + AS+ LA+E GA   F  + + QG+ PID+ 
Sbjct: 525 LAKNGVKYSDGSAISLTHRTFEAMQYYLLKASMNLAKEYGACPLFNETTYAQGILPIDTY 584

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +   +   +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 ----KADLDKFCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 640

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V         +R       +  +  +DG                 
Sbjct: 641 GLVTVKASKDGILKQVVPEF-----ERLKGQYETLWQMGSNDG----------------- 678

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKT 899
                     ++     QK+IDQA S N   D    +       ++      A+  G+KT
Sbjct: 679 ---------YLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKT 729

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY  +R      +  L+ 
Sbjct: 730 LYYHNTRDGAEDVQQDLQD 748


>gi|269963957|ref|ZP_06178266.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
 gi|269831300|gb|EEZ85450.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
          Length = 760

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 197/798 (24%), Positives = 323/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLYNH----------VARL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSI----KKETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DLICEEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGFVSVKASKDGILKQVVPDFTE-----LKDNYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|262274471|ref|ZP_06052282.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
 gi|262221034|gb|EEY72348.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 197/809 (24%), Positives = 325/809 (40%), Gaps = 81/809 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  ++ ++   G   + +  ++  ++  A  GL +VS   V   ++   YDG+   D+  
Sbjct: 1   MNQQITVLKRSGIKENIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++                      ++  + 
Sbjct: 61  TIIKAAADLISEETPDYQYLAARLAVFHLRKKAYGRFEPPTLL-----------DHVNKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +L  L + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLLEDYTAEELNILDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYIMVAACLFANYPKETRLDYIRRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVRYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE               AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFADQAEFERLYVKYENDPSIQR----ETRKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPIRQSNLCLEIALPTKPLTNVEDDQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L       +R LD+++D   + +  A+K+    R +G+G++ F
Sbjct: 466 AFNLGAIK-----ELDELEELADLTIRALDSLLDYQDYPLPAARKATMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+ERGA  +F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANGLTHRTFEAIQYYLLKASVGLAKERGACPAFNETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      WD L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICDEPLHYDWDALRAEIIEHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V        K +D +   ++ +++ +DG +            
Sbjct: 637 PPRGFVSIKASKDGILKQVVP---EYEKYKDSY--ELLWNIESNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGLMQKFVDQAISANTNYD-PSKQPGGKVPMKLLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           G+KT YY  +R      +  L   D    
Sbjct: 725 GVKTLYYHNTRDGADDAQKDLAAQDDDCA 753


>gi|156975011|ref|YP_001445918.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526605|gb|ABU71691.1| hypothetical protein VIBHAR_02733 [Vibrio harveyi ATCC BAA-1116]
          Length = 760

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 200/798 (25%), Positives = 327/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TMIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLH----------DHVARL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   + ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDKHILEDYTKAELDELDAYMDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQEEFERLYVKYENDPSI----KKETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L         WD L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DLICEEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V      ELK     +  ++ ++  +DG              
Sbjct: 637 PPRGFVSVKASKDGILKQVVPDF-AELKD----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSGYESGKVPMKKLLQDLLTAYKF 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|284009346|emb|CBA76527.1| ribonucleoside-diphosphate reductase 1 alpha chain [Arsenophonus
           nasoniae]
          Length = 767

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 201/809 (24%), Positives = 339/809 (41%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL+DVS   V   +    YDG+  SD+  
Sbjct: 5   MNQSLLVTKRDGHKERIDLDKIHKVITWAAEGLKDVSVSQVELRSQIQFYDGIKTSDIHE 64

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  + AR  +  LR++               E   LY ++    
Sbjct: 65  TMIKAAADLISADTPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-QHVLHM 113

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L       +   + + L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 114 VKIGKYDKHLLTDYSAEEFEQMDSFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 173

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 174 QFLYILVAACLFSRYPKETRLDYIHRFYDAISNFKISLPTPIMAGVRTPTRQFSSCVLIE 233

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 234 CGDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAV 293

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ +
Sbjct: 294 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQINKLMYERLIK 353

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V+ L++ +     EFE  Y  YE+ A   +    +++ A+ L+  M+  
Sbjct: 354 SEEITLFSPSDVAGLYEAFFADQSEFERLYLKYEQDASIRQ----KRVKALDLFSLMMQE 409

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 410 RASTGRIYIQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTRPLNDINDEKGEIALCTLS 469

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD+++D   + I  A+K +   R +G+G++ +
Sbjct: 470 AFNLGAITS-----LDELEELAVLAVRALDSLLDYQNYPIIAAEKGSMGRRTLGIGVINY 524

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 525 AYYLAKHGVHYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNDTTYAKGILPI 584

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   +      W  L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 585 DSYKKSL----DALTSEPLHYDWQTLRKNIKQYGLRNSTLSALMPSETSSQISNATNGIE 640

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R   D  ++  +  +DG +            
Sbjct: 641 PPRGYISIKASKDGILRQVVPEY-----ERLKNDYELLWQMPNNDGYLQ----------- 684

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    P+ K    +L      A+  G
Sbjct: 685 ---------------LVGIMQKFIDQSISANTNYDPTRFPNNKVPMNQLLKDLLLAYKYG 729

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 730 VKTLYYHNTRDGAEDTQVDLEEVVESADS 758


>gi|197334709|ref|YP_002156002.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
 gi|197316199|gb|ACH65646.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
          Length = 758

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 206/805 (25%), Positives = 331/805 (41%), Gaps = 79/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+  
Sbjct: 1   MTQQLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TIIKAAADLISEDTPDYQYLAARLSVFHLRKKAYGQ-FEPPTLFNH----------VLNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           IE G   + + E     +   +   + + RD  F Y  ++ L  +YF+   + G+  E  
Sbjct: 110 IELGKYDKHIVEDYTQEEFDLMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKESRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  YE YE+            + A+ L+  ++  
Sbjct: 350 GGNISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A     +            AVR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIEKLEEL-----EELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDI----DAICNEELHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     N        +  ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVPDFANLKN-----NYELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKK----LDFIYRQAWLMG 896
                               QK++DQA S N   D   +P+GK     L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           LKT YY  +R   S  +  L   D 
Sbjct: 726 LKTLYYHNTRDGASDSQDDLGQDDD 750


>gi|301156449|emb|CBW15920.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 756

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 199/798 (24%), Positives = 332/798 (41%), Gaps = 79/798 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + +  G
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + A  
Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L++ +  +   FE  Y  YE+  +  +    R + AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ +   L
Sbjct: 470 -----GKLENLDELESLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ PID+  
Sbjct: 525 AKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +   +          W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 NDIDSLTQ----EPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++ +K++  G    V     N        +  ++ D+  +DG                  
Sbjct: 641 HVSIKASKDGILKQVVPDYEN-----LSDNYELLWDIPSNDG------------------ 677

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTT 900
                    +      QK++DQA S N   D    +        L      A+  GLKT 
Sbjct: 678 --------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTL 729

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      +  L  
Sbjct: 730 YYQNTRDGAEDSQEDLDD 747


>gi|325201995|gb|ADY97449.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240149]
          Length = 753

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 198/790 (25%), Positives = 333/790 (42%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 406 GRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L
Sbjct: 466 GALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+  
Sbjct: 521 AKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYK 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 581 KDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 636

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 637 LVTVKASKDGILKQVVPEF--------------------------------ETLKNAYET 664

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D       + S K++      A+  G+KT
Sbjct: 665 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKT 724

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 725 LYYHNTRDGA 734


>gi|237808190|ref|YP_002892630.1| ribonucleotide-diphosphate reductase subunit alpha [Tolumonas
           auensis DSM 9187]
 gi|237500451|gb|ACQ93044.1| ribonucleoside-diphosphate reductase, alpha subunit [Tolumonas
           auensis DSM 9187]
          Length = 758

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 212/807 (26%), Positives = 321/807 (39%), Gaps = 83/807 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   D    + +  ++  +V  A  GLQ VS   V    +   YDG+  SD+  
Sbjct: 1   MTASLMVTKRDNHTEALDLDKIHRVVTWAAEGLQGVSVSQVELSAHIQFYDGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI ++ P+Y  + AR  +  LR++     +  P      + Q          
Sbjct: 61  TLIKSAADLISEQAPDYQYMAARLAMFHLRKKAYGG-FTPPSLFEQVKTQ---------- 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L       +   L   L +ERD  F Y  ++ L  +Y L   + G   E P
Sbjct: 110 VEAGRYDQQLLTDYSKEEFDLLDGYLAHERDMHFAYAAVKQLEGKYLLQNRVTGEIYESP 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VA  L        +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVAACLFANYPRTTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEENRVRHMDYGVQINRLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D +     EFE  Y  YE+     +    R++ AV L+  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFADQAEFERLYLQYEKDPAIRK----RQMKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI             + E A+C L 
Sbjct: 406 RAGTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLDHYLDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD ++D   + I  AK      R +G+G++ +
Sbjct: 466 AFNLGAIES-----LDELEPLAELAVRALDALLDYQDYPIPAAKNGAMWRRPLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + ASV+LA+E GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASVKLAKEFGACPRFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +            L WD L+  ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDLDD----LCQEPLLLDWDSLRHEIRQHGLRNSTLTALMPSETSSQIANATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V       +     LW +        +DG +           
Sbjct: 637 PPRGLISVKASKDGILRQVVPDYTELKDNYELLWSQ------PNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK++DQA S N   D PS         K+L      A+ 
Sbjct: 681 ----------------LVGVMQKFVDQAISANTSYD-PSRFEGHKVPMKQLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDG 921
            GLKT YY  +R      +  +   D 
Sbjct: 724 YGLKTLYYHNTRDGADDAQLQVAQSDD 750


>gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           oneidensis MR-1]
 gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           oneidensis MR-1]
          Length = 762

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 336/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +  
Sbjct: 1   MNSNMTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF----------EPPKLY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + + AV L+  M+  
Sbjct: 350 GESISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +         + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL         D  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F
Sbjct: 466 ALNLGTIT-----DLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICSEPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++  +  ++G +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-----DTLKNNYELLWQMPSNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPARFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S +   +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDQHDDITNIEKEDD 753


>gi|121635005|ref|YP_975250.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis FAM18]
 gi|120866711|emb|CAM10463.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           FAM18]
 gi|325132506|gb|EGC55199.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M6190]
          Length = 759

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 200/803 (24%), Positives = 336/803 (41%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKD 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D         S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY  +R      ++ ++ 
Sbjct: 727 GVKTLYYHNTRDGADDTQADIQD 749


>gi|260778826|ref|ZP_05887718.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604990|gb|EEX31285.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 760

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/798 (24%), Positives = 327/798 (40%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLH----------DHVSRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           I+ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 IDMGKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDPSI----KKESVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPLFGETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DLVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTEY-----KDNYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSRFESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|323497714|ref|ZP_08102729.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
 gi|323317190|gb|EGA70186.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
          Length = 760

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 335/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   + + +++  ++  A  GL +VS   V    +   YDG++ +D+  
Sbjct: 1   MNQQLTVTKRNGRKETIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           I+ G   + + E     +L  L   L + RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 IDMGKYDQHILEDYTKAELDELDAYLDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPQETRLSYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP----SVKKETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     ++  E A++      WD L++ + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDVDLVCEEALH----YDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K +D +   ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFT---KYKDNY--ELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D P+         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PTRFESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|56419446|ref|YP_146764.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56379288|dbj|BAD75196.1| ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           kaustophilus HTA426]
          Length = 785

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 266/805 (33%), Positives = 400/805 (49%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++  +  + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAVAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L++L RE          +   ++ +  Y +++   +
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLQQLYREAA--------RQRGYDARERYGDFYSLIV 142

Query: 261 ---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
              E+GV + LL E     ++    + L   +D  F Y+GL+ L DRY       R  E+
Sbjct: 143 SLTEQGVYSPLLLERYTKEEIETAGSFLDPGKDLLFTYIGLRTLADRYLARDYERRLYEL 202

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  F+ +AM L + E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ 
Sbjct: 203 PQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVD 262

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+T
Sbjct: 263 TVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNT 322

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V 
Sbjct: 323 AVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVE 382

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
           Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + +
Sbjct: 383 QRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +            +         L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF-----------ERRGYQSHGELDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +              V +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779


>gi|308389412|gb|ADO31732.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           alpha710]
          Length = 759

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/794 (25%), Positives = 334/794 (42%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|260772918|ref|ZP_05881834.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
 gi|260612057|gb|EEX37260.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
          Length = 760

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 201/798 (25%), Positives = 329/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++E A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVIEWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I SS  LI +E P+Y  + AR  +  LR++              +E   LY ++    
Sbjct: 61  TIIKSSADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVSAM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E     +   +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VAKGKYDSHLLEDYSAEEFALMDTFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAACLFAKYPKATRLDFVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYRRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y NYE           R + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVNYENDPSI----KKRTVKALEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D+++LA  +   VR LD ++D   + +  A+KS    R +G+G++ +
Sbjct: 466 AFNLGAI--EKLDDFEELAELV---VRALDALLDYQDYPLPAARKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PI
Sbjct: 521 AYYLAKHGVKYSDGSANGLTHRTFEAMQYYLLKASVLLAKEQGRCPAFNETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      WD L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DTLCDEPLHYDWDSLRNEIMEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V    +   +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFIKLKE-----NYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSQYDSGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     ++
Sbjct: 725 GVKTLYYHNTRDGAKDDQ 742


>gi|261867685|ref|YP_003255607.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413017|gb|ACX82388.1| hypothetical protein D11S_1001 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 756

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 196/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+  +  +    R + AV L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYETFFADQDKFEQLYVQYEQDPNIRK----RTVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLENLDELDNLADLAVRTLDALLDYQDYPVIAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DSLTTEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGE-----NYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDSQEDLDD 747


>gi|297530898|ref|YP_003672173.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. C56-T3]
 gi|297254150|gb|ADI27596.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. C56-T3]
          Length = 785

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 266/805 (33%), Positives = 398/805 (49%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++  +  + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE          +   ++ +  Y +++   +
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAA--------RQRGYDERERYGDFYSLLV 142

Query: 261 ---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
              E+GV +  L E     ++  +   L  E+D  F Y+GL+ L DRY       R  E+
Sbjct: 143 ALTEQGVYSPFLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYEL 202

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  F+ +AM L   E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ 
Sbjct: 203 PQERFLVIAMTLMANEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVD 262

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+T
Sbjct: 263 TVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNT 322

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V 
Sbjct: 323 AVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVE 382

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
           Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + +
Sbjct: 383 QRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSK-EKVPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +            +         L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF-----------ERRGYESHGELDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +              V +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIEE 779


>gi|319765946|ref|YP_004131447.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y412MC52]
 gi|317110812|gb|ADU93304.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC52]
          Length = 785

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 267/805 (33%), Positives = 400/805 (49%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++  +  + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE          +   ++ +  Y +++   +
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAA--------RQRGYDERERYGDFYSLLV 142

Query: 261 ---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
              E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY       R  E+
Sbjct: 143 ALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYEL 202

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  F+ +AM L + E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ 
Sbjct: 203 PQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVD 262

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+T
Sbjct: 263 TVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNT 322

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V 
Sbjct: 323 AVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVE 382

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
           Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + +
Sbjct: 383 QRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +            +         L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF-----------ERRGYESHGELDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +              V +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779


>gi|315634376|ref|ZP_07889663.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476966|gb|EFU67711.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 756

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/802 (24%), Positives = 334/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGTL   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGTLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L +     +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDHALLDDYTREEWDEMDSFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGDITLFSPSDVKGLYEAFFADQDKFEELYVQYEQDPSIRK----RTVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DSLTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGE-----NYELLWDIPGNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDSQEDLDD 747


>gi|15677158|ref|NP_274311.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis MC58]
 gi|7226531|gb|AAF41667.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis MC58]
 gi|316984081|gb|EFV63059.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
 gi|325134465|gb|EGC57110.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M13399]
 gi|325140482|gb|EGC63003.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis CU385]
 gi|325205933|gb|ADZ01386.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M04-240196]
          Length = 759

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|332290531|ref|YP_004421383.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
 gi|330433427|gb|AEC18486.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
          Length = 756

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 198/802 (24%), Positives = 328/802 (40%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L++   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNTSLRVTKRDGRLEPINLDKIHRVITWAAEGLNNVSVSQVELRSHIQFYEGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI K+ P+Y  + AR  +  LR++             H E   LY E   R 
Sbjct: 61  TIIKSAADLISKDTPDYQYLAARLAIFHLRKKAFG----------HFEPPRLY-EQVKRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDASLLVDYSREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFAQYPKETRLNYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            A  TLFSP +V  L+  +  +   FE  Y  YE+  D  +    R + A+ L+  ++  
Sbjct: 350 GADITLFSPSDVPGLYAAFFADQEKFEQLYLKYEQDPDIRK----RSVKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         ++  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLQHIHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+L      AVR LD ++D   + ++ A+      RA+G+G++ +
Sbjct: 466 AFNLGALN-----NLDELEDLADLAVRALDALLDYQNYPVKAAEIGAMGRRALGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS +LA+E G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASNQLAKEFGPCKFFDETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDVDSLTK----EPLHYDWESLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGFVSIKASKDGILRQVVPDYENLSE-----NYELLWDIPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +   +  QK+IDQ+ S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVAIMQKFIDQSISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY  +R      +  L  
Sbjct: 726 VKTLYYQNTRDGAEDSQEDLDD 747


>gi|212697416|ref|ZP_03305544.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675608|gb|EEB35215.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 805

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 266/869 (30%), Positives = 414/869 (47%), Gaps = 110/869 (12%)

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++      + +      +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R   
Sbjct: 2   DKISLNIENTIKERYPKDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVL 61

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +  +S       L I+ D      ++++R              + S  +  E++      
Sbjct: 62  TDFESYIDDDYTLSIIKD--INEEYDNQR------------YPIESLYLKFESFTK--AN 105

Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +++  L  ALI ++  L  KE P++  + ARF++  +  ++  +  K        ++Q L
Sbjct: 106 MTKEALLNALIKAASELTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL 165

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-N 310
                      G+    + ES  + DL  L   LK ER+  F Y GL ++  RY +    
Sbjct: 166 --------TSVGLYGAYILESYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFE 217

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G  IE  Q  FM ++M LA+ E ++   A + Y++LS      +TPT+ N+     QLSS
Sbjct: 218 GEYIESVQEMFMGISMHLAIGEKDRVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSS 277

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+
Sbjct: 278 CFIDTVPDTLKGIYRSITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKL 337

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF 
Sbjct: 338 ANDTAVAVDQLGVRQGAVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFW 397

Query: 491 KRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           K    N    W +F P EV       + D YG+EFE  Y    +     +    R I+  
Sbjct: 398 KECRDNIGGDWYMFDPHEVLVKYGKSIEDTYGEEFEEFYHKLVKD----KEISKRVIAIK 453

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV---- 599
            L R ++    ETG P++  +D  N  +P +H G+++SSNLCTEI  N S  ET      
Sbjct: 454 DLIRLLIKSWTETGTPFVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIK 513

Query: 600 -------------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
                              CNL S+ L     N   D ++L   + T VR LDNVID+N 
Sbjct: 514 TVDGETVIVNTTKPGDFVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNY 570

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA-VEIADESMEFISFHAISASV 699
           +    AK +N  +RAIGLG  G+   L    I ++  EA +E  D   E I++ AI AS 
Sbjct: 571 YPTPYAKVTNKKYRAIGLGTSGYHHMLVKNDIKWSEEEAHLEFVDRVYEDINYFAIKASN 630

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A+E+G+YS F+GS WD G +                        W++LK +V   G+R
Sbjct: 631 EIAKEKGSYSCFEGSDWDNGNY--------------FKQRGYESQRWEKLKDQVHKNGLR 676

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   +AIAPT + + I G S  +DP     +++         +   +   L  +  W   
Sbjct: 677 NGYLLAIAPTGSTSIISGTSAGVDPIMNKYFLEEKKG----AIVPRVAPGLNTKTFW--- 729

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y   
Sbjct: 730 ------------------------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITT 765

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           E + +++  IY  AW  G+K+ YY+R +S
Sbjct: 766 EYTMRQILNIYLTAWEAGVKSLYYVRGKS 794


>gi|332970338|gb|EGK09330.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella kingae
           ATCC 23330]
          Length = 758

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 201/791 (25%), Positives = 332/791 (41%), Gaps = 81/791 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   +G+L + N  ++  +++ A   L +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRNGSLEAINLDKIHRVLDWAAEDLNNVSVSQVEMKSHIQFYNGIRTQDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR+      Y  P             ++  +  E 
Sbjct: 65  KSAADLISEDTPDYQYMAARLAIFHLRKIAYGD-YTPPHLF----------DHVTKLTEA 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           G     + +     +   +   + ++RD  F Y  ++ L  +Y +   ++    E PQ  
Sbjct: 114 GKYDPHILQDYTRAEFDEINQYIDHDRDLTFSYAAVKQLEGKYLVQNRVSKQIYESPQFL 173

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VAM L  K  +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 174 YMLVAMCLFAKYPKATRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLLYTRLIKNQD 353

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE      +    R +SA  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYENDPTIRK----RTMSASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN  S     V  V  SNLC EI         +N  + E A+C L + N
Sbjct: 410 TGRIYIQNVDHCNTHSPFNPKVAPVRQSNLCLEIALPTKSLNNINDENGEIALCTLSAFN 469

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A    N  +++ LA      VR LD ++D   + IE A+K+    R +G+G++ +   
Sbjct: 470 LGAI--ENLDEFEPLADLT---VRALDALLDYQDYPIEAARKATMNRRTLGIGVINYAYY 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A+ +   + E + ++ + ASV LA+E GA   F  + + QG+ PID+ 
Sbjct: 525 LAKNGVKYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFGETTYSQGILPIDTY 584

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +   +   +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 ----KADLDKFCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPR 640

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V                                    D LK  + 
Sbjct: 641 GLVTVKASKDGILKQVVPEF--------------------------------DRLKSQYE 668

Query: 847 TAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLK 898
           T +++      ++     QK+IDQA S N   D    +       ++      A+  GLK
Sbjct: 669 TLWQMGGNDGYLKLVGVMQKFIDQAISANTSYDPTRFEGGRVPMNQMLKDLLSAYKYGLK 728

Query: 899 TTYYLRSRSAT 909
           T YY  +R   
Sbjct: 729 TLYYHNTRDGA 739


>gi|127512874|ref|YP_001094071.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           loihica PV-4]
 gi|126638169|gb|ABO23812.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella loihica PV-4]
          Length = 762

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/813 (24%), Positives = 342/813 (42%), Gaps = 83/813 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +++    G   + +  ++  ++  A  GL +VS   V   ++   YDG+    +  
Sbjct: 1   MNSNMQVTKRSGERETIDLDKIHRVITWAAKGLNNVSVSEVELRSHLQFYDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLSARLAIFHLRKKAFGQF----------EPPSLY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     +       +L  L + + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDTHILNDYSREELDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +     +FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYPRETRLQYVKDFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE+     E    ++I AV L+  M+  
Sbjct: 350 GGMITLFSPSDVPGLYDAFFEDQAEFERLYVKYEQD----ESIRKKQIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTKPLNNIDDPDGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A         D+L S    AVR LD+++D   + I  A K +   R +G+G++ F
Sbjct: 466 ALNLGAIKK-----LDELESLADLAVRALDSLLDYQDYPIVSAHKGSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  +F  + + +G+ PI
Sbjct: 521 ANYLAKEGVRYSDGSANGITHKTFEAIQYYLLKASMNLAKEQGACPAFHETNYAKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        + W+ L+  +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHMDWETLRGEIKTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V         ++  +   ++  +  ++G +           
Sbjct: 636 EPPRGLISVKASKDGQLKQVVPDF-----EKYQYSYELLWQMPGNEGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK++DQ+ S N   D PS         + L      A+ 
Sbjct: 681 ----------------LVGLMQKFVDQSISANTNYD-PSRFPGAKVPMQVLLKDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            G+KT YY  +R   S +   +  ++ + ++  
Sbjct: 724 YGVKTLYYHNTRDGASDKYDDITSIEKEDDSCA 756


>gi|217973231|ref|YP_002357982.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS223]
 gi|217498366|gb|ACK46559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS223]
          Length = 762

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 335/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +  
Sbjct: 1   MNSTMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSCIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL +       D + LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGSI--KELSDIEPLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICAEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G    V                 ++  +  +DG +            
Sbjct: 637 PPRGLISVKSSKDGQLKQVVPDF-----DTLKDSYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S     +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDSHDDITNLEKEDD 753


>gi|90412218|ref|ZP_01220224.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
 gi|90326942|gb|EAS43327.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
          Length = 753

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 198/804 (24%), Positives = 332/804 (41%), Gaps = 81/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   +    ++  +++ A  GL +VS   V  +++   YDG+  +D+  
Sbjct: 1   MNQQLTVTKRDGRKETIELDKIHRVIDWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TIIKAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VNKGKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE+ A          I A+ L+  ++  
Sbjct: 350 GQNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASI----KKESIKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L       VR LD ++D   + +  A++S    R +G+G++ +
Sbjct: 466 AFNLGAIDT-----LDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNVTHQAFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++  +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KAIDDVC-SEELHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K +D +   ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVP---EYSKYKDNY--ELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK+IDQ+ S N   D PS         K L      A+ +
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYD-PSKQANGKVPMKLLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY  +R   S  +   +  
Sbjct: 725 GVKTLYYHNTRDGASDNQDDAEDC 748


>gi|325138280|gb|EGC60849.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis ES14902]
 gi|325142422|gb|EGC64826.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis 961-5945]
 gi|325198445|gb|ADY93901.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis G2136]
          Length = 753

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/799 (24%), Positives = 336/799 (42%), Gaps = 81/799 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L
Sbjct: 466 GALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+  
Sbjct: 521 AKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYK 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 581 KDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 636

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 637 LVTVKASKDGILKQVVPEF--------------------------------ETLKDAYET 664

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D         S K++      A+  G+KT
Sbjct: 665 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKT 724

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY  +R      ++ ++ 
Sbjct: 725 LYYHNTRDGADDTQADIQD 743


>gi|254805094|ref|YP_003083315.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
 gi|254668636|emb|CBA06263.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
          Length = 759

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|54309623|ref|YP_130643.1| ribonucleotide-diphosphate reductase subunit alpha [Photobacterium
           profundum SS9]
 gi|46914061|emb|CAG20841.1| putative ribonucleoside-diphosphate reductase,alpha subunit
           [Photobacterium profundum SS9]
          Length = 753

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 197/803 (24%), Positives = 332/803 (41%), Gaps = 79/803 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   +    ++  ++  A  GL +VS   V  +++   YDG+  +D+  
Sbjct: 1   MNQQLTVTKRDGRQETIELDKIHRVINWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TIIKAAADLISEESPDYQYLAARLAIFNLRKKAYGQ-FEPPTLFAH----------VTNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VNKGKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE+ A          I A+ L+  ++  
Sbjct: 350 GQNISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASI----KKESIKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L       VR LD ++D   + +  A++S    R +G+G++ +
Sbjct: 466 AFNLGAIET-----LDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  I  ++ E I ++ + ASV LA+E+GA  +F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANNITHQTFEAIQYYLLKASVGLAKEQGACPAFHETTYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++  +      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KAIDDVC-SEELHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        K +D +   ++ ++  +DG +            
Sbjct: 637 PPRGFVSVKASKDGILKQVVP---EYSKYKDNY--ELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKK----LDFIYRQAWLMG 896
                               QK+IDQ+ S N   D   + +GK     L      A+ +G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPSKQANGKVPMTLLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY  +R   S  +   +  
Sbjct: 726 VKTLYYHNTRDGASDAQDDAEDC 748


>gi|300723736|ref|YP_003713043.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630260|emb|CBJ90911.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 763

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 205/810 (25%), Positives = 338/810 (41%), Gaps = 81/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  + AR  +  LR++               E   LY  +  R 
Sbjct: 61  TMIKAAADLISGDAPDYQYLAARLAIFNLRKKAYGQF----------EPPALYN-HVVRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VDLGKYDKHLLEDYSKEEFEQMDSFINHLRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSNYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE  ++  +     +I AV L+  M+  
Sbjct: 350 GEDISLFSPSDVPGLYDAFFADQDEFERLYTQYENDSNIRK----ERIRAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D  +L      AVR LD+++D   + I  A++ +   R +G+G++ F
Sbjct: 466 AFNLGAIE-----DLTELEELAELAVRALDSLLDYQDYPIIAAQQGSMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDSSANNLTHKTFEAIQYYLLKASNELAKERGACPWFGETTYSQGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    + W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKTL----DTLSSEPLHMDWEALRRDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V   + + +     LW       +  ++G +           
Sbjct: 637 PPRGYISVKASKDGILRQVVPDYDLLKGAYELLW------QMPSNNGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    P+GK    +L      A+  
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           G+KT YY  +R      +  L+ V    ++
Sbjct: 725 GVKTLYYHNTRDGAEDVQGDLEEVVESADS 754


>gi|71892251|ref|YP_277985.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796357|gb|AAZ41108.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 760

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/801 (25%), Positives = 339/801 (42%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G     N  ++  ++  A  GL+ VS   V   ++   Y+G+  SD++ 
Sbjct: 1   MNQTLLVTKRNGHHEPINLDKIHRVINWAAKGLEQVSVSQVELRSHIQFYNGIKTSDIQE 60

Query: 201 ALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI E+EP+Y  + AR  +  LR++     ++ P+   H            R 
Sbjct: 61  TIIKAAADLISEEEPDYQYLAARLAVFHLRKKAYGQ-FEPPKLYNH----------VLRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           I+ G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 IKIGKYDQHLLDDYNAEEFNQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++  A  L  K  +K +     +FY+ +S+F    +TP +    T   Q SSC L  
Sbjct: 170 QFLYILTAACLFSKYPKKTRMHYIQQFYDAISTFKISLATPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSSIVKYVAQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G D  R   ++    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +     EFE  Y  YE   +       RKI A+ L+  M+  
Sbjct: 350 GKYITLFSPSDVPGLYEAFFNNQNEFEHLYNIYENDHNIRH----RKIKAIELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S    +   V  SNLC EIT        +N  + E A+C L 
Sbjct: 406 RASTGRIYIQHTDHCNTHSAFDSIAAPVRQSNLCLEITLPTKPLNNINDHNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL      N  + D L+      VR LD ++D   + I  A++S    R++G+G++ +
Sbjct: 466 AFNL-----GNIENLDDLSELSILIVRALDALLDYQHYPIPAAQRSAVRRRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I +H + AS  LAQE+G+   F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANKLTHRTFEAIQYHLLRASNNLAQEKGSCEWFNDTSYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+            +N      W++L+ ++K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKTDLNSF----INEPLHYNWEDLRVKIKKYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++ +G    V    +      +L                  + +IPD+   
Sbjct: 637 PPRGYISIKTSKNGILRQVVPEFIKLKSDYEL------------------LWQIPDN--- 675

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        ++     QK+IDQ+ S N   D PS         K+L      A+ +
Sbjct: 676 ----------RGYLQLVGIMQKFIDQSISTNTNYD-PSRFPENKVPMKQLLSDLLYAYRL 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      + TL
Sbjct: 725 GIKTLYYHNTRDGAQDVQKTL 745


>gi|261253083|ref|ZP_05945656.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
 gi|260936474|gb|EEX92463.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
          Length = 760

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/798 (24%), Positives = 330/798 (41%), Gaps = 81/798 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLH----------DHVARM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFENQDEFERLYVKYENDP----SVKKETVKAIEMFSILMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D L       VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIKS-----LDDLEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLRASVALAKEQGKCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DLVCDEQLHYDWDGLREEIVTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V              +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEFTEY-----KDNYELLWNIGSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D P+         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PTRFESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R   S ++
Sbjct: 725 GVKTLYYHNTRDGASDDQ 742


>gi|251792453|ref|YP_003007179.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533846|gb|ACS97092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter aphrophilus NJ8700]
          Length = 756

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 198/802 (24%), Positives = 333/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGKLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDTPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDHALLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++++  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYEVFFADQDKFEELYVQYEQDPSIRK----RAVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DSLTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGE-----NYELLWDIPGNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDSQEDLDD 747


>gi|148653375|ref|YP_001280468.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           sp. PRwf-1]
 gi|148572459|gb|ABQ94518.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter sp. PRwf-1]
          Length = 758

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 188/803 (23%), Positives = 335/803 (41%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+  
Sbjct: 3   HMDNIKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQ-FEPPHLF----------DHVTKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E G   + + +     +   L + + + RD    Y   + +  +Y +      +  E P
Sbjct: 112 TEAGKYDQHILQDYSREEFDELNDYIDHWRDMNLAYAAAEQMAGKYLVQDRVTKTVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L     + E+      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVGMCLFASYDKSERMHYVKRFYDAASTFKISLPTPIMSGVRTPSRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRPLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
                LFSP +V  L++ +  +   FE  Y  YE+  +  +    R + A  L+  ++  
Sbjct: 352 GEDIALFSPSDVPGLYEAFFADQDKFEALYTKYEKDDNIRK----RHVPAADLFSLLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL    +      + +       VR LD ++D   + ++ A+  +   R +G+G++ +
Sbjct: 468 AVNLGEVDS-----LEDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +   N   RL W+ L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTY----KADLDKVCNEPLRLDWEALRQEIKTHGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V   ++N        +  ++  +  +DG              
Sbjct: 639 PPRGLVSVKASKDGILKQVVPDILNLKG-----NYELLWQMPNNDG-------------- 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        ++  +  QK+IDQ+ S N   D P+         K L      A+ +
Sbjct: 680 ------------YLKLVAVMQKFIDQSISANTNYD-PTRFEGNRVPMKVLLKDLLTAYKL 726

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY  +R   +  ++ +  
Sbjct: 727 GVKTLYYHNTRDGANDAQADIDD 749


>gi|114563304|ref|YP_750817.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           frigidimarina NCIMB 400]
 gi|114334597|gb|ABI71979.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 762

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/809 (24%), Positives = 338/809 (41%), Gaps = 81/809 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   S +  ++  ++  A  GL++VS   V   ++   +DG+    +  
Sbjct: 1   MNSNMTVTKRSGERESIDLDKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  V AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFVAARLAVFHLRKKAFGQF----------EPPTLY-DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     +       +L  L   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VEIGKYDMHIMADYSREELDILDTYIDHWRDLNFSYAAVKQLEGKYLVQNRVTHEVYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  +  + K   +FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKEIRLKYIKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CDDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ ++  +    ++I AV L+  M+  
Sbjct: 350 GEYISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSNIRK----KQIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIKQSNLCLEIALPTKPLTNIDDPDGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       D  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----DLSELEPLADLAVRALDNLLDYQDYPIKAAQTSSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 ANYLAKNGKKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFHETTYSKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        + W+ L+  +K  G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHMDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V         +       ++ ++  +DG             
Sbjct: 636 EPPRGLISVKASKDGQLKQVVPDF-----ELLKDKYELLWNMPNNDG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLM 895
                         I+     QK+IDQA S N   D    +        L       + +
Sbjct: 678 -------------YIQLVGLMQKFIDQAISANTNYDPSRFEGGRVPMQTLLKDLLSVYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           G+KT YY  +R   S +   +  V+ + +
Sbjct: 725 GIKTLYYHNTRDGASDQFDDIIAVEEEDD 753


>gi|89092732|ref|ZP_01165685.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
 gi|89083244|gb|EAR62463.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
          Length = 754

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 208/806 (25%), Positives = 329/806 (40%), Gaps = 82/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     + +++  +V  A  GL  VS   V  + +   ++G+   D+  
Sbjct: 1   MQQDLMVTKRDGRQEKLDLEKIHKVVIWAADGLNAVSPSEVELKAHLQFFEGMKTFDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI ++ P+Y  + AR  +  LR+      ++ P+   H   Q          
Sbjct: 61  TLIKSAADLISEDAPDYQYLAARLAIFHLRKRAFGQ-FEPPRLFDHVSAQ---------- 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E   + +   L   L ++RD  F Y  ++ L  +Y +   + G   E P
Sbjct: 110 VEAGRYDKHLIEDYSEAEWETLNGYLDHKRDMNFSYSAVKQLEGKYLVQNRVTGEVYESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VA  L     ++ +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QILYMLVAACLFADYPKETRLDYVKRFYDATSLFKLSLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSASIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP EV  L+D +     EFE  Y  YE   +  +    + I AV L+  +   
Sbjct: 350 GGDITLFSPHEVPGLYDAFFADQDEFERLYVQYENDPNIRK----QTIKAVELFGILAAE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
             +TG  +I   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RAQTGRIYIQNVDHCNTHSPFDPTVAPVKQSNLCLEIALPTKPLQHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       D D+L +     VR LDN++D   + I  A  S    R +G+G+  F
Sbjct: 466 AFNLGALE-----DLDELDNLADLIVRALDNLLDYQDYPIPAAHTSTMNRRPLGVGVTNF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E + ++ + AS  LA+ERG    F  +++ +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLVHKTFEAVQYYLLKASNALAKERGKCPKFDETVYSKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   E          W+ L++ +K  G+RNS   A+ P  T + I   +  I+
Sbjct: 581 DTYKREVDEFCE----EPLHYFWETLREDIKEFGLRNSTLTALMPCETSSQITNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        +Q +L     + D+  + G +            
Sbjct: 637 PPRGYVSVKASKDGIMKQVVPGYTELREQYEL-----LWDIPNNTGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQ+ S N   D PS         K+L      A+  
Sbjct: 681 ---------------LVGIMQKFVDQSISANTNYD-PSLFPNDKVPMKQLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S +++   G +G
Sbjct: 725 GVKTLYYHNTRDGAS-DQADDGGCEG 749


>gi|240016385|ref|ZP_04722925.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA6140]
 gi|240113128|ref|ZP_04727618.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae MS11]
 gi|240118182|ref|ZP_04732244.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID1]
 gi|254493924|ref|ZP_05107095.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268599211|ref|ZP_06133378.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268603897|ref|ZP_06138064.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
 gi|226512964|gb|EEH62309.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268583342|gb|EEZ48018.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268588028|gb|EEZ52704.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
          Length = 759

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P    H            + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLYNH----------VKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKEVRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N    E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|325200081|gb|ADY95536.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
          Length = 753

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 199/790 (25%), Positives = 333/790 (42%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L
Sbjct: 466 GALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+  
Sbjct: 521 AKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYK 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 581 KDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 636

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 637 LVTVKASKDGILKQVVPEF--------------------------------ETLKNAYET 664

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D       + S K++      A+  G+KT
Sbjct: 665 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKT 724

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 725 LYYHNTRDGA 734


>gi|52425047|ref|YP_088184.1| ribonucleotide-diphosphate reductase subunit alpha [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307099|gb|AAU37599.1| NrdA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 765

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 198/803 (24%), Positives = 326/803 (40%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG +   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+  
Sbjct: 10  MNKALMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHE 69

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY E+  + 
Sbjct: 70  TIIKAAADLISKDAPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-EHVKKL 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   + N L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 119 VRLGKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 178

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K   + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 179 QFLYILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 238

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 239 CDDSLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQTAV 298

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  + L+ N G +  R   M+    I     +R+ +
Sbjct: 299 KSCSQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRLIK 358

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 359 GGDITLFSPSDVPGLYEAFFADQAKFEELYVKYEQDPTIRK----RTVKAVDLFSLLMQE 414

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 415 RASTGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCTLS 474

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         D D+L +    AVR LD ++D   + +  AK+S+   RA+G+G++ +
Sbjct: 475 AFNLGKI-----DDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVINY 529

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS+ LA+E GA   F  + + +G+ PI
Sbjct: 530 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGILPI 589

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +       +      W++L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 590 DTYKKDVDNLT----SEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNGIE 645

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VK++  G    V     N   K   LW                    +P+   
Sbjct: 646 PPRGHISVKASKDGILKQVVPDYENLSDKYELLW-------------------DMPNMDG 686

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +H                  QK++DQ+ S N   D    +        L      A+  
Sbjct: 687 YLH-------------LVGIMQKFVDQSISANTNYDPKRFEDDKVPMKILLKDLLTAYKY 733

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           GLKT YY  +R      +  L  
Sbjct: 734 GLKTLYYQNTRDGADDAQEDLDD 756


>gi|59801041|ref|YP_207753.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA 1090]
 gi|240013943|ref|ZP_04720856.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI18]
 gi|240121512|ref|ZP_04734474.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID24-1]
 gi|240128433|ref|ZP_04741094.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268686828|ref|ZP_06153690.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293398905|ref|ZP_06643070.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
 gi|59717936|gb|AAW89341.1| putative ribonucleotide reductase I alpha chain [Neisseria
           gonorrhoeae FA 1090]
 gi|268627112|gb|EEZ59512.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610319|gb|EFF39429.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
          Length = 759

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P    H            + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLYNH----------VKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKEARLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N    E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|239999149|ref|ZP_04719073.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|240080504|ref|ZP_04725047.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|240115884|ref|ZP_04729946.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID18]
 gi|240123730|ref|ZP_04736686.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID332]
 gi|240125921|ref|ZP_04738807.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-92-679]
 gi|260440301|ref|ZP_05794117.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI2]
 gi|268594983|ref|ZP_06129150.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268596638|ref|ZP_06130805.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268601558|ref|ZP_06135725.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268682360|ref|ZP_06149222.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268684518|ref|ZP_06151380.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291043594|ref|ZP_06569310.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
 gi|268548372|gb|EEZ43790.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268550426|gb|EEZ45445.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268585689|gb|EEZ50365.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268622644|gb|EEZ55044.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268624802|gb|EEZ57202.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291012057|gb|EFE04046.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
          Length = 759

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P    H            + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLYNH----------VKKI 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N    E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|325144566|gb|EGC66865.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240013]
          Length = 764

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 8   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 67

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 68  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 116

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 117 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 176

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 177 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 237 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 297 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 356

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 357 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 412

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 413 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 472

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 473 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 527

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 528 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 587

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 588 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 643

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 644 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 671

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 672 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 731

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 732 GVKTLYYHNTRDGA 745


>gi|209695248|ref|YP_002263177.1| ribonucleotide-diphosphate reductase subunit alpha [Aliivibrio
           salmonicida LFI1238]
 gi|208009200|emb|CAQ79454.1| ribonucleoside-diphosphate reductase 1 alpha chain [Aliivibrio
           salmonicida LFI1238]
          Length = 758

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 202/805 (25%), Positives = 330/805 (40%), Gaps = 79/805 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           + P+L +   +GT    N +++  ++  A   L +VS   V  +++   Y+G+  SD+  
Sbjct: 1   MTPQLTVTKRNGTTEKINLEKIHKVITWAAENLDNVSVSQVEMKSHIQFYEGMKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR++     ++ P             ++    
Sbjct: 61  TIIKAAADLISEETPDYQYLAARLSVFHLRKKAYGQ-FEPPTLF----------KHVNNL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           IE G   + + E   + +   +   + + RD  F Y  ++ L  +YF+   + G+  E  
Sbjct: 110 IELGKYDKHITEDYTEAEFDLMDQMIDHSRDMDFSYAAVKQLEGKYFVQNRVTGAIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKDTRLDYIQRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CDDSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KCCSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  +++ +     EFE  Y  YE+            I A+ L+  ++  
Sbjct: 350 GEHISLFSPSDVPGMYEAFFADQVEFERLYLKYEQDTSI----KRETIKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLTHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A     +            AVR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAIEKLEEL-----EELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I F+ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHKTFEAIQFYLLKASVNLAKEQGACPAFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +       +    L W+EL+  +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDIDN----ICSEELHLDWEELRSDIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V    +N        +  ++ ++  +DG +            
Sbjct: 637 PPRGFVSIKASKDGILKQVVPDYLN-----LKDNYELLWNIGSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMG 896
                               QK++DQA S N   D  S        K L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPNSQPNGKVPMKLLLKDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDG 921
           LKT YY  +R   S  +  L   D 
Sbjct: 726 LKTLYYHNTRDGASDSQGDLAQDDD 750


>gi|126174280|ref|YP_001050429.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS155]
 gi|153000810|ref|YP_001366491.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS185]
 gi|304408852|ref|ZP_07390473.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|307302855|ref|ZP_07582610.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
 gi|125997485|gb|ABN61560.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella baltica OS155]
 gi|151365428|gb|ABS08428.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS185]
 gi|304352673|gb|EFM17070.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|306913215|gb|EFN43637.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
          Length = 762

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 335/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +  
Sbjct: 1   MNSTMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL +       D + LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGSI--KELSDIEPLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICAEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G    V                 ++  +  +DG +            
Sbjct: 637 PPRGLISVKSSKDGQLKQVVPDF-----DTLKDSYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S     +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDSHDDITNLEKEDD 753


>gi|325204294|gb|ADY99747.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240355]
          Length = 753

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 201/790 (25%), Positives = 334/790 (42%), Gaps = 81/790 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYIRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L
Sbjct: 466 GALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+  
Sbjct: 521 AKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYK 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 581 KDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 636

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 637 LVTVKASKDGILKQVVPEF--------------------------------ETLKNAYET 664

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQA S N   D       + S K++      A+  G+KT
Sbjct: 665 LWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKT 724

Query: 900 TYYLRSRSAT 909
            YY  +R   
Sbjct: 725 LYYHNTRDGA 734


>gi|85711600|ref|ZP_01042657.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
 gi|85694460|gb|EAQ32401.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
          Length = 777

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 203/840 (24%), Positives = 339/840 (40%), Gaps = 92/840 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+  
Sbjct: 1   MNEQLFVTKRSGQREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR+                E   LY ++  + 
Sbjct: 61  TIIKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKF----------EPPRLY-DHVKKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++E      L E   + +   +   + + RD  F Y  ++ L ++Y +   + G   E  
Sbjct: 110 VDEKRYDAHLLEDFSEQEFDQMDEIIDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYPKSTRMDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEIENLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLVK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D +    +EFE  Y  YE      E    ++I A+ L+   +  
Sbjct: 350 DDFITLFSPSDVPGLYDAFFEDQEEFERLYVQYEND----ENIRKKRIKAIELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL      +  D+++LA     AVR LD+++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGKI--ESLSDFEELAD---LAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I F+ + AS+ELA+E+G    F  + + QG+ P 
Sbjct: 521 AYYLAKHGVKYSDGSANGLVHRTFEAIQFYLMKASMELAKEKGKCPKFNETTYSQGILPT 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +       +    L W++L+K ++  GMRNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDAF----CSEPLHLDWEQLRKDIQEHGMRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + VK++  G    V     N +     LW                   +IPD+  
Sbjct: 637 PPRGFVSVKASKDGVTKQVVPDYENLKNNYELLW-------------------QIPDN-- 675

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
                         ++     QK++DQ  S N   D       +   K+L      A+ M
Sbjct: 676 -----------KGYLQLVGIMQKFVDQTISANTNYDPGKFNGAKVPMKQLLQDLLTAYKM 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
           G+KT YY  +R   +  +S +   + K        P               D +C    C
Sbjct: 725 GVKTLYYHNTRDGAADNQSDI-SAEQKRQRKQSDRPAEVVI--------EEDDDCAGGAC 775


>gi|308049657|ref|YP_003913223.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631847|gb|ADN76149.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
          Length = 757

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 198/799 (24%), Positives = 320/799 (40%), Gaps = 83/799 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     + +++  ++  A  GL +VS   V        YDG+    +  
Sbjct: 1   MNSNLLVTKRDGRKEPIDLEKIHRVIYWAAMGLDNVSVSQVELAAQIYFYDGIETEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI ++  LI  + P+Y  + AR  +  LR++     ++ P             ++  + 
Sbjct: 61  TLIKAAADLISADNPDYQYLAARLAVFHLRKKAFGQ-FEPPHLY----------DHVTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++       L       +   L   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VQARRYDEHLLADYSREEFDELNAYIDHWRDMKFSYAAIKQLEGKYLVQNRVTGEVYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M VA  L     +  +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVAACLFADYPKDVRLSYVKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G++PFLK      
Sbjct: 230 CGDSLDSISATSTSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGMLPFLKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE+ L L+ N G D  R   M+    I     +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVEDLLVLKNNRGTDANRIRHMDYGVQINRALYQRLIE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y+ YE+     +    + + A+ L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYQQYEQDPSIRK----KTVKAITLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIQHVDHCNTHSPFDPRVAPVKQSNLCLEIALPTKPLSHPDDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD+++D   + I+ A+ S    R +G+G++ F
Sbjct: 466 AFNLGAIEQ-----LDELEEMADLAVRALDSLLDYQDYPIKAARISTMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+      +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PI
Sbjct: 521 AYYLAKNGARYSDGSGNNLTHKTFEAIQYYLLKASVGLAKEKGACPAFNETTYSQGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L  + DE        L W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKKALDAICDE-----PLHLDWEGLRAEILEHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK +  G    V   +     +       ++  +  + G +           
Sbjct: 636 EPPRGLVSVKGSKDGVMKQVVPGI-----ETLRDQYELLWTIPNNTGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                                QK++DQA S N   D PS         K L      A+ 
Sbjct: 681 ----------------LVGLMQKFVDQAISANTNYD-PSRYEGNKMPMKVLLQDLMLAYK 723

Query: 895 MGLKTTYYLRSRSATSVEK 913
            GLKT YY  +R   S  +
Sbjct: 724 YGLKTLYYQNTRDGQSDSQ 742


>gi|160875519|ref|YP_001554835.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS195]
 gi|160861041|gb|ABX49575.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS195]
 gi|315267706|gb|ADT94559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS678]
          Length = 762

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 192/808 (23%), Positives = 335/808 (41%), Gaps = 79/808 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +  
Sbjct: 1   MNSTMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     ++ P   TH            + 
Sbjct: 61  TIIKAAADLISPESPDYQFLAARLAVFHLRKKAFGQ-FEPPALYTH----------VTKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +     +FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EFE  Y  YE+ +   +    + I AV L+  M+  
Sbjct: 350 GENISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL +       D + LA     AVR LDN++D   + I+ A+ ++   R +G+G++ F
Sbjct: 466 ALNLGSI--KELSDIEPLAD---LAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A E+   + E I F+ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 ANYLAKNGMKYSDGSANELTHRTFEAIQFYLLKASMNLAKEQGACPLFHETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DKICAEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G    V                 ++  +  +DG +            
Sbjct: 637 PPRGLISVKSSKDGQLKQVVPDF-----DTLKDSYELLWKMPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +KT YY  +R   S     +  ++ + +
Sbjct: 726 VKTLYYHNTRDGASDSHDDITNLEKEDD 753


>gi|332974188|gb|EGK11122.1| ribonucleotide-diphosphate reductase alpha subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 758

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 189/803 (23%), Positives = 328/803 (40%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+  
Sbjct: 3   HMDNLKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      ++ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQ-FEPPHLF----------DHVTKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
              G     + +     +   L   + + RD    Y   + +  +Y +      +  E P
Sbjct: 112 TAAGKYDEHILQDYSREEFDELNEYIDHWRDMTLAYAAAEQMAGKYLVQDRVTKTVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V M L     + E+      FY+  S F     TP +    T   Q SSC L  
Sbjct: 172 QFLYMLVGMCLFASYDKSERLHYVKRFYDASSQFKISLPTPIMAGVRTPSRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRTLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
                LFSP +V  L++ +  +   FE  Y  YE+     E    R + A  L+  ++  
Sbjct: 352 GQDIALFSPSDVPGLYEAFFADQDKFEELYTEYEQD----ENIRKRHVPAADLFSLLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCMEIALPTKPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL           D +       VR LD ++D   + ++ A+  +   R +G+G++ +
Sbjct: 468 AVNL-----GEVQSLDDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PI
Sbjct: 523 AYYLAKNGVKYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +   N   +L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTY----KADLDKICNEPLQLDWEALRSEIKEHGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V   ++N        +  ++  +  +DG              
Sbjct: 639 PPRGLVSVKASKDGILKQVVPDILN-----LKDNYELLWQMPNNDG-------------- 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        ++  +  QK+IDQ+ S N   D P+         K L      A+ +
Sbjct: 680 ------------YLKLVAVMQKFIDQSISANTNYD-PTRFEGNRVPMKVLLKDLLTAYKL 726

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY  +R   +  ++ +  
Sbjct: 727 GVKTLYYHNTRDGANDAQADIDD 749


>gi|293392276|ref|ZP_06636610.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952810|gb|EFE02929.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 756

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 196/802 (24%), Positives = 330/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE   +  +    R + AV L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYEAFFADQDKFEQLYVQYELDPNIRK----RTVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLENLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L++ ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DSLTTEPLHYNWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSVKASKDGILKQVVPDYENLGE-----NYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDSQEDLDD 747


>gi|149190929|ref|ZP_01869192.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
 gi|148835284|gb|EDL52258.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
          Length = 763

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 205/801 (25%), Positives = 329/801 (41%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G   S + +++  ++  A  GL +VS   V  + +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRNGRKESIDLEKIHRVIAWAAEGLNNVSVSQVELKAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR++     Y+ P             ++  + 
Sbjct: 61  TIIKSAADLISEDAPDYQYLAARLAIFHLRKKAYGQ-YEPPALF----------DHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E     +L  L + + + RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VEMGKYDAHLLEDYTKSELDELDSYIDHTRDHDFSYAAVKQLEGKYFVQNRVSGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q
Sbjct: 290 KCCSQGGVRGGAATVFYPMWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYARLVQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE             + AV L+  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFEDQDEFERLYVKYENDPSI----KKETVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    +              VR LD ++D   + +  A KS    R +G+G++ +
Sbjct: 466 AFNLGAINELDDL-----KDLSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANNLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTY----KNDVDLVCDEPLHYDWDALRSEIMEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     N  +     +  ++ ++  +DG              
Sbjct: 637 PPRGYVSVKASKDGILKQVVPDFANLKE-----NYELLWNIGNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +      QK++DQA S N   D PS         KKL      A+  
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYD-PSVYESGKVPMKKLLQDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R     ++S  
Sbjct: 725 GVKTLYYHNTRDGAKDDQSDK 745


>gi|163803512|ref|ZP_02197382.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
 gi|159172688|gb|EDP57539.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
          Length = 760

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 197/799 (24%), Positives = 322/799 (40%), Gaps = 83/799 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P             ++  R 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLH----------DHVARL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   L+++RD  F Y  ++ L  +YF+   ++G   E  
Sbjct: 110 VDMGKYDQHILEDYTKAELDELDAYLEHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L     ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +   L+D +    +EFE  Y  YE             + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDAPGLYDAFFENQEEFERLYVKYENDP----SVKKETVKAIEMFTLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI L +         S E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D         VR LD ++D   + +  A KS    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAIQYYLLKASVMLAKEQGKCPLFDETNYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +L  +      W  L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DLICDEKLHYDWGTLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                     +LK 
Sbjct: 637 PPRGFVSVKASKDGILKQVVPDF--------------------------------AELKN 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +   + I      +      QK++DQA S N   D PS         KKL      A+ 
Sbjct: 665 DYELLWNIGSNEGYLHLVGIMQKFVDQAISANTNYD-PSGYDSGKVPMKKLLQDLLTAYK 723

Query: 895 MGLKTTYYLRSRSATSVEK 913
            G+KT YY  +R     ++
Sbjct: 724 FGVKTLYYHNTRDGAKDDQ 742


>gi|261419129|ref|YP_003252811.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           Y412MC61]
 gi|261375586|gb|ACX78329.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC61]
          Length = 760

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 267/805 (33%), Positives = 400/805 (49%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++  +  + ++   L   
Sbjct: 6   KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 65

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE          +   ++ +  Y +++   +
Sbjct: 66  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAA--------RQRGYDERERYGDFYSLLV 117

Query: 261 ---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEM 316
              E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY       R  E+
Sbjct: 118 ALTEQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYEL 177

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  F+ +AM L + E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ 
Sbjct: 178 PQERFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVD 237

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+T
Sbjct: 238 TVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNT 297

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V 
Sbjct: 298 AVSVDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVE 357

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
           Q   W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + +
Sbjct: 358 QRGDWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSK-EKVPAIEVMK 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 417 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 476

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 477 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 531

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 532 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 591

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +            +         L WD LK+ V   GMRN   MAIAP
Sbjct: 592 PAFPGSDWQTGAYF-----------ERRGYESHGELDWDRLKQDVARYGMRNGYIMAIAP 640

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +              V +L ++  W            
Sbjct: 641 NASTSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNEQTTW------------ 684

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 685 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 729

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 730 LHLTAWKSGLKTTYYVRSTSGTIDE 754


>gi|297250514|ref|ZP_06864463.2| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838834|gb|EFH22772.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 764

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 200/803 (24%), Positives = 335/803 (41%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 8   TPTDLKVTKRDGRLEAIDLDKIHRVVAWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 67

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 68  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 116

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
              G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 117 TYAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 176

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 177 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 237 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 297 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 356

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 357 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 412

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N    E A+C L 
Sbjct: 413 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLS 472

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 473 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 527

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 528 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 587

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 588 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 643

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 644 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 671

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 672 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 731

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           G+KT YY  +R      ++ ++ 
Sbjct: 732 GVKTLYYHNTRDGADDTQADIQD 754


>gi|157375443|ref|YP_001474043.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           sediminis HAW-EB3]
 gi|157317817|gb|ABV36915.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 762

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 196/809 (24%), Positives = 336/809 (41%), Gaps = 81/809 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   LK+    G   + +  ++  ++  A   L +VS   V   ++   +DG+    +  
Sbjct: 1   MNSNLKVTKRSGERETIDLDKIHRVITWAAKDLNNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY E+  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLSARLAIFHLRKKAFGQF----------EPPKLY-EHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     +       +L  L   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VEMGKYDAHILHDYSREELDTLDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLTYIKNFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRQLDYGVQLNKVMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE+     +     ++ A  L+  ++  
Sbjct: 350 GGMITLFSPSDVPGLYDAFFEDQDEFERLYHQYEQD----DSVRKTQVKAAELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       D  +L      AVR LDN++D   + I  A+KS+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----DLSELEPLADLAVRALDNLLDYQDYPITAAQKSSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  SF  + + +G+ PI
Sbjct: 521 ANYLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPSFHETSYSKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        + W+ L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRHLDQICDE-----PLHMDWETLRQDIVQHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VKS+  G    V          +  +   ++  +  ++G +           
Sbjct: 636 EPPRGLISVKSSKDGQLKQVVPDF-----DKYQYSYELLWQMPNNEGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLM 895
                                QK++DQA S N   D    +        L      A+ +
Sbjct: 681 ----------------LVGLMQKFVDQAISANTNYDPSRFEGQKVPMQVLLKDLLNAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           G+KT YY  +R   +   S +  V+ +  
Sbjct: 725 GVKTLYYHNTRDGATDSHSDIVSVEKEDE 753


>gi|254672041|emb|CBA04616.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha275]
          Length = 759

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|325128286|gb|EGC51170.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis N1568]
          Length = 753

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 199/799 (24%), Positives = 336/799 (42%), Gaps = 81/799 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  +  +  
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKLTDAA 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L + NL
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L
Sbjct: 466 GALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYL 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+  
Sbjct: 521 AKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYK 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 581 KDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRG 636

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V                                    + LK  + T
Sbjct: 637 LVTVKASKDGILKQVVPEF--------------------------------ETLKNAYET 664

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++      ++     QK++DQ+ S N   D         S K++      A+  G+KT
Sbjct: 665 LWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKT 724

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY  +R      ++ ++ 
Sbjct: 725 LYYHNTRDGADDTQADIQD 743


>gi|238021470|ref|ZP_04601896.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
 gi|237868450|gb|EEP69456.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
          Length = 757

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 199/804 (24%), Positives = 327/804 (40%), Gaps = 79/804 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +++   DG L   N  ++  +V  A  GL +VS   V  +++   Y+G+   D+  
Sbjct: 1   MTGNMQVTKRDGRLEPINLDKIHKVVTWAAEGLDNVSVSQVELKSHIQFYNGIRTDDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR+      Y  P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAIFHLRKIAYGE-YAPPHLFAH----------VQKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L +   + +   +   + +ERD  F Y  ++ +  +Y +   +     E P
Sbjct: 110 VALGKYDAHLLQDYTEAEYNEINGYIDHERDLTFSYAAVKQMEGKYLVQNRVTRQIFESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  +  +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 230 CDDSLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+V+  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHIEVQSLLVLKNNRGVEENRIRQLDYGVQINKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP E   L++ +     EFE  Y  YE      +      ISA  L+  ++  
Sbjct: 350 GGNITLFSPHETPGLYEAFFADQDEFERLYTQYENDPSIRK----ETISAADLFSMLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RAGTGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       + D+  +     VR LD ++D   + I  AKK+    R +G+G++ +
Sbjct: 466 AFNLGALE-----NLDEFENLADLTVRALDALLDYQDYPIPAAKKATMNRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+++   + E + ++ + ASV LA+E GA   F  + + QG+ PI
Sbjct: 521 SYYLAKNGVKYSDGSAIDLTHRTFEAMQYYLLKASVNLAKEYGACPLFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTY----KADLDKFCNEPLHYDWEALRADIVKYGLRNSTLSALMPSETSSQIANATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G    V         +R       +  +  +DG              
Sbjct: 637 PPRGLVTIKQSKDGILKQVVPEF-----ERLKNQYETLWQMGGNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                        ++     QK+IDQA S N   D    +       ++      A+  G
Sbjct: 678 ------------YLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVD 920
           +KT YY  +R      +S L+  D
Sbjct: 726 VKTLYYHNTRDGADDRQSDLQDDD 749


>gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 701

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 212/714 (29%), Positives = 368/714 (51%), Gaps = 31/714 (4%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T     + +++ +  +Y  +  R  +  L +E         +K     +  LY
Sbjct: 1   MTTVELDTLAADIAASMVNQHMDYEILAGRIAISNLHKET--------KKVFSEVITQLY 52

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                       +    + +++      L + + Y+RDF + Y   +IL +++ L +NG 
Sbjct: 53  HGNLSIMNRRLPRISEKYYTIIQEHADRLNSAIIYDRDFNYSYTAFKILENKHLLRLNGK 112

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ   MRVA+ +   + +    A+E YNLLS  + + +  TL ++ T   Q++S F
Sbjct: 113 VVERPQHMLMRVAVSIHNDDVDN---AIETYNLLSKQYIVHAAQTLNSACTVKQQMASSF 169

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GI  +L+  A+L  ++G +G +   +R     I GT G S G++P L+  
Sbjct: 170 LLTMSEDSIDGILDSLERVAVLCHHNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLRAY 229

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           N +   V      +G +  YLE WH D+ +FL+L+++ GD++ R  DM  A W PD+FM+
Sbjct: 230 NTSIPTV-CRKNIEGPITVYLEPWHSDIYQFLELKRDIGDEQLRAKDMFYALWTPDIFMR 288

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  +A W+L  P E   L D++G EFE  Y  YE      E +  +++ A  LW  +  
Sbjct: 289 RVFDDADWSLMCPHECPGLIDVWGDEFEALYIRYEE-----ENRYRKQVKARDLWVFITQ 343

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           +  +TG P+I +KD CN++S QQ++G ++  +  TE+   S+S+E A C+L +I +    
Sbjct: 344 LQIQTGTPYIVYKDHCNLKSNQQNLGTINCGSFSTEVIQYSASDEIAACHLATIAVDMFV 403

Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL   ++     LD +ID+N + +E+   S +  RAIG+   G   A  L
Sbjct: 404 NSTTKTYDFSKLKKVVKIVTYNLDKMIDVNLYPLEEVTFSAYRQRAIGISASGLADAFIL 463

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ S EA ++  +  E   + A+ AS E+A E G Y++++GS   +G+   +     
Sbjct: 464 MRYPFESKEAKKLNVQIFETFYYGALEASCEMAIEDGPYATYEGSPVSKGILQYEMWNAK 523

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK ++   G+RNS  +A      +A + G ++S+ P   N+
Sbjct: 524 P----------TDLWDWDTLKAKIAKYGVRNSLLIAQTSDTFMAQMLGNNESVGPYTSNI 573

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                 S  F  V   L+ +L ++ LW E M + +  + GSI +I+ IPDDLK ++ TA+
Sbjct: 574 CTMHASSKLFPYVKKHLLRDLIEKGLWSEDMCNKIISNGGSIQDIDDIPDDLKLLYKTAW 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           E+    + E A+ R  +IDQ+Q LN+++ +PS  KL  ++  AW +GLK++ Y 
Sbjct: 634 EMPQKRIFEMAAARGPFIDQSQCLNVHMKDPS-DKLTSMHFYAWEIGLKSSMYH 686


>gi|194098863|ref|YP_002001927.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934153|gb|ACF29977.1| Ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           gonorrhoeae NCCP11945]
 gi|317164438|gb|ADV07979.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 764

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 202/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 8   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHE 67

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P    H            + 
Sbjct: 68  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLYNH----------VKKI 116

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G   R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 117 TDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 176

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 177 QFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 237 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 297 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 356

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++  
Sbjct: 357 GGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQE 412

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N    E A+C L 
Sbjct: 413 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLS 472

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 473 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINY 527

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 528 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 587

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 588 DTYKKDL----DAVCGEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 643

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 644 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 671

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 672 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 731

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 732 GVKTLYYHNTRDGA 745


>gi|294140835|ref|YP_003556813.1| ribonucleoside-diphosphate reductase subunit alpha [Shewanella
           violacea DSS12]
 gi|293327304|dbj|BAJ02035.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           violacea DSS12]
          Length = 762

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 198/798 (24%), Positives = 331/798 (41%), Gaps = 83/798 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MKVTKRSGERETIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISPEAPDYQFLSARLAVFHLRKKAFGQF----------EPPKLY-DHVVKLVESG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              + + E     +L  L   + + RD  F Y  ++ L  +Y +   +     E  Q  +
Sbjct: 114 KYDQHILEDFSREELDILDGYVDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGGMI 353

Query: 500 TLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D + +   EFE  Y  YE            +I A  L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEAD----NSVRKTQIKATELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D  +L      AVR LDN++D   + I  A++S+   R +G+G++ F + L
Sbjct: 470 GKIK-----DLSELEPLADLAVRALDNLLDYQDYPIIAARQSSMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  I  ++ E I ++ + AS+ LA+E+G    F  + + +GV PID+  
Sbjct: 525 AKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEKGPCPLFHETTYSKGVLPIDTYK 584

Query: 728 L-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L ++ DE        + W+ L++ +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 RSLDKICDE-----PLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + VKS+  G    V             LW       +  +DG                
Sbjct: 640 GLISVKSSKDGQLKQVVPDFEKYQHSYELLW------QMPNNDG---------------- 677

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLK 898
                      I+     QK++DQA S N   D    +        L      A+ +GLK
Sbjct: 678 ----------YIQLVGLMQKFVDQAISANTNYDPSRFEGNKVPMQVLLKDLLNAYKLGLK 727

Query: 899 TTYYLRSRSATSVEKSTL 916
           T YY  +R   S +  ++
Sbjct: 728 TLYYHNTRDGASDQLDSI 745


>gi|227498393|ref|ZP_03928543.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903855|gb|EEH89773.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 760

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/813 (29%), Positives = 385/813 (47%), Gaps = 98/813 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   DG     + ++ + ++  AC GL       +  ++     DG++   ++  LI
Sbjct: 2   DIMIRKRDGHFEPLSVEKTKRMIAFACLGLDSCDPMELEMDSKLQFVDGMTTKQIQQTLI 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             E  P++  V AR  L  L +E       K     +     
Sbjct: 62  RTAIEKVIPSRHEGGGVPLQEMNPDWQFVAARLFLFDLYKEAAIQRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +       +++   A        + +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FSNLIHMLVDKKKYADFFVTDYTEDELQELGDYIKPKRDYLFNYEGLKLLADRYLVRGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E + +   A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEVYELPQERFMAIAMHLALVEGKNKVAYAKKFYDLMSELKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF+  V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFVAGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWV 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q G+RKG     L+ WH D  EF++LR N GDDRR+ HD+  +  +P+L
Sbjct: 296 RLYNDTAVAVDQLGRRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPSISVPNL 355

Query: 489 FMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           FM+R+ +   +TLF P EV+      L D Y  E + A+  +    ++        + A+
Sbjct: 356 FMERLIKRENFTLFDPHEVNTVMGFALEDFYDTEEDKAFTEHYLACEKDSRLHGISVPAL 415

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------ 591
            + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N            
Sbjct: 416 EMMKKIMKSAVETGTPFIFFRDTVNEANPNKHAGMIYASNLCHEIAQNVGFTNLKKEILE 475

Query: 592 --------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                   ++  +   CNL SINL       + D D L   I   VR+LDNVI IN   +
Sbjct: 476 DDGTITTVTAPGDMVTCNLNSINL------GKIDEDFLEEQIALQVRMLDNVITINQTPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +++ +   +RAIGLG  G+   L    + + S E +  AD   E I+++AI AS+EL++
Sbjct: 530 PESRLTCDKYRAIGLGTSGYHHYLVKHGLRWESKEHIAAADALFEKIAYYAIKASMELSK 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GAY +FKGS WD G +                    +   W  L   V   GMRN   
Sbjct: 590 EKGAYPAFKGSEWDTGKYFT--------------RRGYTSEKWQRLAADVHKYGMRNGYL 635

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT + +NI   +  IDP ++  +++                +L  +  W       
Sbjct: 636 LAVAPTGSTSNIANTTAGIDPIFKKFFIEEKQG----SFTPKTAPDLNPKTFW------- 684

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                               ++  A  ID  W I + + RQ+ IDQAQS NLY       
Sbjct: 685 --------------------LYKEAHTIDQQWSIRANAARQRHIDQAQSFNLYITPRMKA 724

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            ++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 725 SEILNLYIEAYKQGIKTIYYVRNQSLEMDECTS 757


>gi|295103294|emb|CBL00838.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium prausnitzii SL3/3]
          Length = 817

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 264/895 (29%), Positives = 415/895 (46%), Gaps = 126/895 (14%)

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + KAF   +G+G     R  D       + +  +L +    + + +E +QD+VE +LM+ 
Sbjct: 1   MKKAF---DGQGKEIGSREMD-------EILATVLNNLSVTVPLTVERVQDEVERTLMER 50

Query: 110 GHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
           GH+++ + Y+LYRE+RS    VR   + +  D  +   L+ +  D T   ++   L+M  
Sbjct: 51  GHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVLRRIQMDFTEEVYSLAALQMKF 110

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLL 225
           E  C                     G++E +   AL  ++  L   E P +  + AR L 
Sbjct: 111 ESFCR-------------------LGMTEDERAEALTKAAVELTTAEAPKWEFIAARLLN 151

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
              R        +  Q+     +  LY +      ++G+    +       ++    + L
Sbjct: 152 HSFR-------CRNAQEWEGRGVCDLYGK-LRYLTDKGLYGDYILAHYTHEEIAMAEDFL 203

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE-TEKEKRAVEFY 343
             ERD  F Y GL +L  RY +       +E PQ  F+ +A+ LA+ E +++      FY
Sbjct: 204 CPERDELFTYSGLDLLLKRYVIQSRSRVPLETPQEMFLGIALHLAMNEGSDRMGWVKRFY 263

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++LS      +TPT+ N+   + QLSSCF+ TVPD L GI+ +L   A ++K+ GG+G  
Sbjct: 264 DMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPDSLDGIYRSLDNFAKVSKFGGGMGMY 323

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R+GAV  YL+ WH D+ EFL
Sbjct: 324 FGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFL 383

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGK 516
            LR N GDDR + HD+  A   PDLF +   +N  A W L  P E+       L D +G 
Sbjct: 384 QLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENIDAPWHLMCPHEILTVKGYALEDYWGT 443

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E+E  Y +             R ++   + R +L    ETG P+   +D  N  +P  H 
Sbjct: 444 EWEKRYLDCVNDPRI----EKRSVTVKDIVRLVLRSAVETGTPFAFNRDSVNHMNPNGHT 499

Query: 577 GVVHSSNLCTEITLN-----------------------SSSEETAVCNLGSINLLAHFAN 613
           G+++ SNLCTEI  N                       +   E  VCNL S++L      
Sbjct: 500 GMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIVVTATRPGEFVVCNLASLSLGNLPVE 559

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D   +  T+ TA+R LDNVID+N + +E A+ +N  +R+IGLG+ G+   L    I 
Sbjct: 560 ---DEAYMERTVETAIRALDNVIDLNFYPLEYARLTNQKYRSIGLGVSGYHHMLAKRGIH 616

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S E +   D   E I++ A+ A   LA+E+G Y+ F+GS W  G +            
Sbjct: 617 WESDEHLAFTDAVFELINYAAVKADTALAREKGRYALFEGSDWQTGAY------------ 664

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                   +   W  L K V   GMRN+  +A+APT++ + + G S  IDP  +  +++ 
Sbjct: 665 --FEKRGYTSEKWRALAKTVAVQGMRNAYLLAVAPTSSTSILSGTSAGIDPIMKKFFLEE 722

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                   V                                  +  D    +  A  ID 
Sbjct: 723 KKGSMLPRVAP-------------------------------ELSMDTWWYYKAAHLIDQ 751

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            W + +A  RQ+ IDQAQS+NLY+    S +++  +Y +AW  G+KT YY+RS++
Sbjct: 752 SWSVRAAGLRQRHIDQAQSMNLYITNDYSMRQVLRLYLEAWRAGVKTIYYVRSKA 806


>gi|218768315|ref|YP_002342827.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis Z2491]
 gi|121052323|emb|CAM08653.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           Z2491]
 gi|319410560|emb|CBY90928.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
          Length = 759

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 201/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|161870165|ref|YP_001599335.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis 053442]
 gi|161595718|gb|ABX73378.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           053442]
          Length = 759

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGNLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|145631491|ref|ZP_01787260.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|144982921|gb|EDJ90434.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
          Length = 756

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 194/802 (24%), Positives = 332/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDAQEDLDD 747


>gi|15602582|ref|NP_245654.1| ribonucleotide-diphosphate reductase subunit alpha [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721011|gb|AAK02801.1| NrdA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 756

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 197/802 (24%), Positives = 326/802 (40%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG L   +  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGHLEPIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   + + L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDPALLVDYTREEWDEMDSYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K   + +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPTETRLSYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYEAFFADQDKFEQLYLQYEQDPTIRQ----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI          +    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDEKGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AKKS+   R++G+G++ +
Sbjct: 466 AFNLGTLE-----NLDELEGLADLAVRALDALLDYQDYPVIAAKKSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDSSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDIDNLTK----EPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V         +    +  ++ DL  +DG              
Sbjct: 637 PPRGHVSVKASKDGILKQVVPEY-----ETLGENYELLWDLPNNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  +  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDIDD 747


>gi|163748932|ref|ZP_02156183.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
 gi|161331308|gb|EDQ02196.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
          Length = 762

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 200/810 (24%), Positives = 337/810 (41%), Gaps = 83/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +  
Sbjct: 1   MNSNMKVTKRSGKRENIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISLEAPDYQFLSARLAIFHLRKKAFGQF----------EPPALY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + + E     +L  L   + + RD +F Y  ++ L  +Y +   +     E  
Sbjct: 110 VKAGKYDKHILEDYSREELDILDTYVDHWRDMSFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D +     EFE  Y  YE  A   +     +I A  L+  M+  
Sbjct: 350 GGMISLFSPSDVPGLYDAFFADQDEFERLYLQYEADASVRK----TQIKATELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       D  +L      AVR LD+++D   + I+ A+KS+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----DLSELEPLADLAVRALDSLLDYQDYPIKAARKSSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  I   + E I ++ + AS+ LA+E GA  SF  + + +G+ PI
Sbjct: 521 AYYLAKEGVRYSDGSANNITHRTFEAIQYYLLKASMNLAKEHGACPSFHETTYSKGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        + W+ L++ +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRSLDKICDE-----PLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + VKS+  G    V             LW       +  +DG +          
Sbjct: 636 EPPRGLISVKSSKDGQLKQVVPDFEKYQHSYELLW------QMPNNDGYLQ--------- 680

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWL 894
                                 QK++DQA S N   D    +        L      A+ 
Sbjct: 681 -----------------LVGLMQKFVDQAISANTNYDPGRFEGNKVPMQVLLKDLLNAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +GLKT YY  +R   S +  ++  V+ +  
Sbjct: 724 LGLKTLYYHNTRDGASDQMDSIISVEKEDE 753


>gi|254670479|emb|CBA06178.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha153]
          Length = 759

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|225850106|ref|YP_002730340.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
 gi|225645946|gb|ACO04132.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
          Length = 804

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 281/813 (34%), Positives = 422/813 (51%), Gaps = 61/813 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK----NMYDGLSESDLETAL 202
           ++  DGT   F  K+L   +     G+       ++ +  K     + + ++  +L+T +
Sbjct: 5   VVKRDGTEEKFQMKKLINAIFALLEGMDIPDDYEIVFKVAKELDLKIPERVTTQELDTLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI K   Y  + A+ LL+ + RE+                       F   IE 
Sbjct: 65  LKAIEQLIPKHYIYDTLAAKQLLKLINREIDKRFSS-----------------FKEAIEF 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
           GV   L    ++DFDL  L + L Y RD   +Y G+  L DRYF     G+ IE PQ FF
Sbjct: 108 GVNENLYKPELLDFDLDRLEDALDYSRDALLDYFGMTTLKDRYFTRDREGNIIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMG+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC++  + D L 
Sbjct: 168 MRVAMGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ IH  N KS GVIPF+K+ +    A+ QG
Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGVIPFIKIFDTIVNAIQQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAVWMPDEIMRRIKEGEPLYL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   +G+EF   Y     +A+ G +K+++KI +   + + L  L +TGHPW+
Sbjct: 344 FDPAECPELVTAWGEEFTKKYFECIEKAETGHLKLWKKIDSREWFNRYLFKLAKTGHPWL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYD 619
           TFKD  N  +P    GV++SSNLCTEI++ +S E TAVC L S+NL  H   +    D+D
Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCTEISIPNSPESTAVCTLASVNLAKHLNEDRTDIDWD 463

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI T V  LDN++D N +  E+++K+    R +G+GLMGF   L  L IPY S  A
Sbjct: 464 KLKDTIETMVLALDNILDKNFYPSEESRKNTMDLRPLGIGLMGFAETLVELGIPYDSDTA 523

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           VE A++  +F+   A   S ELA+ERG +  ++        +P                 
Sbjct: 524 VEFAEKVAKFMRDTAYRKSEELAKERGPFPHYEEMKEKGKPYPYPPR------------- 570

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                              RN+  +AIAPTA+I+ I G + SID  + N++ +  +SG F
Sbjct: 571 -------------------RNAVLLAIAPTASISIIAGTTSSIDSYFSNVFSRDTLSGKF 611

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATAFEIDPMWLIE 858
            VVN  L+ +L++ D+W+E M   +K H GS+  I+ +   + K++   A+EI P   I+
Sbjct: 612 IVVNKQLMKKLEELDMWNEEMAEKIKAHGGSVQFIDELEGKIDKRLFKGAYEIHPFRQID 671

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+  QK++DQA S ++Y++E     +  IY  AW  GLK+TYY         EK T K 
Sbjct: 672 IAAAFQKYVDQAVSKSIYIEEELRGDMFDIYMYAWEKGLKSTYYCFIDKTVKGEKYTQKV 731

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
                         +S  S  + +  T + + E
Sbjct: 732 NKRGTRRGFGLRKAASEESETVKTQTTVEEDIE 764


>gi|229827461|ref|ZP_04453530.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
 gi|229788399|gb|EEP24513.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
          Length = 763

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/820 (31%), Positives = 392/820 (47%), Gaps = 109/820 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G   +   ++ + +V  AC GL       +  ++     +G+S  +++  LI
Sbjct: 2   DILIKKRNGRYENLCVEKTKKMVALACEGLDGCDPMELEMDSKIQFKNGMSTKEIQQVLI 61

Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            S+               L      +  V AR  L  L +E       K  +        
Sbjct: 62  RSAIEKVIVNEQSENGSGLSRMNSKWQHVAARLFLFDLYKEA------KISRNYKTFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            + +     +E G+          + +   LA  +K ERDF F Y G+++L DRY +H +
Sbjct: 116 DFKKLIEMLVERGIYTEDFITKYTEAERRELAEYIKPERDFLFNYEGVKLLADRYLVHGV 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           NG  +E+PQ  FM +AM LA  E +K   A  FY+LLS      +TPTL N+GT   QLS
Sbjct: 176 NGEVMELPQERFMAIAMHLASVEEDKVYYAKAFYDLLSKLKMTVATPTLANAGTTFNQLS 235

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++TV D+L+ I+    + + ++K+ G LG     VR LG+ I G N  S GVIP+++
Sbjct: 236 SCFISTVSDNLWSIYDVNSKFSKVSKHGGALGIYLGKVRSLGSDIRGYNNASGGVIPWVR 295

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q G+RKG     L+ WH D+ EF+DLR N GDDRR+ HD+  A  IPD+F
Sbjct: 296 LYNDTAVAVDQLGRRKGGASITLDIWHKDLYEFIDLRTNNGDDRRKAHDIFPAISIPDIF 355

Query: 490 MKRVTQNAGWTLFSPDEVSD-----LHDLYG-----KEFEIAYENYERQADRGEIKVFRK 539
           M+R+     ++LF P EV       L D Y      KEF   Y+  E             
Sbjct: 356 MERLINRQEFSLFDPHEVEKLMGFSLEDYYDKDEKHKEFSERYKLCEND----NRLTKIT 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----- 594
           + A+ + +K++    ETG P+I F+D  N  +P  H G+++ SNLC EI  N S      
Sbjct: 412 VPALDIMKKIMKSAVETGTPFIFFRDTVNRANPNSHAGMIYGSNLCHEIAQNMSETKYVS 471

Query: 595 ------------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                              +   CNL S+NL           ++L   +   +R+LDNVI
Sbjct: 472 EEIITENGETKIVTTVKSGDMVTCNLNSVNLGNVT------LEELKENVPLQIRMLDNVI 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +N   +  AK ++  +RAIGLG+ G+   L    I + + + +E AD   E I+++AI 
Sbjct: 526 TLNMFPVADAKVTSLKYRAIGLGVSGYHHYLAKNAIAWENEKHIEEADRLFEEIAYNAIK 585

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ELA+E+GAY+ F+GS W  G +  D  G ++E              W ELKK V   
Sbjct: 586 ASMELAKEKGAYAEFEGSKWQTGEYF-DERGYVSER-------------WQELKKDVMKY 631

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+APT + +NI G +  IDP ++  +V+                EL     W
Sbjct: 632 GLRNGYLMAVAPTGSTSNIAGTTAGIDPIFKKFFVEEKKG----SFTPKTAPELNDETFW 687

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                       +  A  I+ +W I + + RQ+ IDQAQS NLY
Sbjct: 688 ---------------------------YYKEAHYINQLWSIRACAARQRHIDQAQSFNLY 720

Query: 877 -LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              E   K +  +Y +A+  G+KT YY+R+RS    E ++
Sbjct: 721 ITPEVKAKDILDMYVEAYKAGIKTIYYVRNRSLEMDECTS 760


>gi|261392426|emb|CAX49971.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 759

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 201/794 (25%), Positives = 333/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 63  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 112 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 468 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 523 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DAVCNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 639 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKD 666

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQA S N   D       + S K++      A+  
Sbjct: 667 AYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKY 726

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 727 GVKTLYYHNTRDGA 740


>gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter
            vinelandii DJ]
 gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor
            [Azotobacter vinelandii DJ]
          Length = 1338

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 340/564 (60%), Positives = 428/564 (75%), Gaps = 17/564 (3%)

Query: 401  GNDWTPVR---GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
            G  ++ +R    +       + K +G   ++     T+   + GGKRKGAVCAYLETWH+
Sbjct: 782  GCVYSRIRDVQPIAVKPFVFDLKVEGDESYM----TTSGLAHNGGKRKGAVCAYLETWHL 837

Query: 458  DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
            D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP +V DLHDL G+ 
Sbjct: 838  DIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPSDVRDLHDLTGRA 897

Query: 518  FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            FE  YE YE     G+IK+F+ I+A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVG
Sbjct: 898  FEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVG 957

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            VVHSSNLCTEITLN+S  E AVCNLGSINL+ H  + + D +KL+ T++TAVR+LDNVID
Sbjct: 958  VVHSSNLCTEITLNTSDSEIAVCNLGSINLVNHINDGRLDTEKLSRTVKTAVRMLDNVID 1017

Query: 638  INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            IN ++++ A+ +N  HR +GLG+MGFQ AL+L HI Y S  A+  AD SME IS++AI A
Sbjct: 1018 INYYSVDTARNANFRHRPVGLGIMGFQDALYLQHIAYGSEAAIAFADRSMEAISYYAIQA 1077

Query: 698  SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKT 755
            S +LA+ERGAYSSF+GSLW +G+ P+DS+ +LAE R    + ++R+S L W  L++RVK 
Sbjct: 1078 SCDLAEERGAYSSFEGSLWSRGILPLDSLDILAEQRGTKYIEVDRSSTLDWAPLRERVKK 1137

Query: 756  IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             GMRNSN MAIAPTATI+NI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R+L
Sbjct: 1138 -GMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKAREL 1196

Query: 816  WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            WD  M++DLKY+DGS+  IERIP DLK ++ATAFE++  W++E+ASRRQKWIDQAQSLNL
Sbjct: 1197 WDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFEVETKWIVEAASRRQKWIDQAQSLNL 1256

Query: 876  YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-- 933
            Y+   SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV      S  
Sbjct: 1257 YIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSAEKSTIN--TGKLNAVSSVIDESLS 1314

Query: 934  --STHSLGIPSSCTSD-TECEVCQ 954
                    +P +C+ D  +CE CQ
Sbjct: 1315 AAEPKPAPVPQACSIDNPDCEACQ 1338



 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/436 (52%), Positives = 306/436 (70%), Gaps = 4/436 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
                   D+ P LA   P +   ++VIKRNG V ++   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  SPGAPRTADSTPDLAATAPGQ---LRVIKRNGTVVAYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ + +  LTEQ  T   +   S   +HIE+IQDQVE +LM++G HK+ R+YV+YRE 
Sbjct: 68  SSRIHETVARLTEQVTTTFRRRMPSGGTIHIEEIQDQVELALMRAGEHKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  R   +  +  A   P +++   DG L+  +  RL+ I+ EAC GL +V + ++  E
Sbjct: 128 RAQERKRAAAVQEVAQPHPSIRVARADGVLVPLDMGRLDTIIGEACEGLAEVDAALIQKE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + AT
Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALGFL-GVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY      Y+E+G++  LL   + +FDLV L   L +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYARALPVYVEKGIEFELLDPKLREFDLVRLGAALDHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G R E+PQ FFMRVAMGLA++E +KE+RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFLHKDGIRFELPQVFFMRVAMGLAIEEPQKEERAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYNAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQ 440
           +PFLKV NDTAVAVNQ
Sbjct: 427 VPFLKVVNDTAVAVNQ 442


>gi|301170417|emb|CBW30023.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae 10810]
          Length = 756

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 194/802 (24%), Positives = 332/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRIGKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|33152745|ref|NP_874098.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           ducreyi 35000HP]
 gi|33148969|gb|AAP96487.1| ribonucleoside-diphosphate reductase, alpha chain [Haemophilus
           ducreyi 35000HP]
          Length = 756

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 192/803 (23%), Positives = 325/803 (40%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   +G     + +++  ++  A  GL +VS   V    +   Y G+  SD+  
Sbjct: 1   MQSQLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI KE P+Y  + AR  +  LR++   T Y  P             E+  + 
Sbjct: 61  TIIKAAADLISKETPDYQYLAARLAVFHLRKKAYGTFY-PPHLF----------EHIQKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G    LL +   + +   +   L +ERD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKLGKYDNLLLKQYSEEEWDIMNGFLVHERDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSSYPKATRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAVIKYVSQRAGIGINAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  + L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPIWHLEVESLVVLKNNRGVEDNRCRHMDYGVQINKLIYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +  TLFSP +V  L++ +  +   FE+ Y  YE+     +    + I A+ L+  ++  
Sbjct: 350 GSDITLFSPSDVPGLYEAFFADQEKFELLYLQYEQDPSIRK----KSIKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D  N  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIHNVDHSNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNINDEQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + ++ A+K     R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDELEPLADLAVRALDALLDYQNYPVKAAEKGAIARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E + ++ + AS+ LA+E G    F  + + +G+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANDLTHRTFEAVQYYLLKASMNLAKELGPCKGFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +   +      S   W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDIDQLTQ----EPSHYDWEALRADIKQFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------ETLKD 664

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I  M   +      QK++DQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPNMDGYLHLVGIMQKFVDQAISANTNYDPKRFEDDKVPMKILLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           GLKT YY  +R      +  L  
Sbjct: 725 GLKTLYYQNTRDGAEDSQEDLDA 747


>gi|33519929|ref|NP_878761.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia floridanus]
 gi|33504275|emb|CAD83167.1| ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus
           Blochmannia floridanus]
          Length = 761

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 200/801 (24%), Positives = 340/801 (42%), Gaps = 79/801 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G     N  ++  ++  A  GL+ +S   V   ++   Y+G+  SD++ 
Sbjct: 1   MNQILFVTKRNGHQEPINLDKIHRVINWAAKGLEKISVSQVELRSHIQFYNGIKTSDIQE 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  +EP+Y  + AR  +  LR++     ++ P+   H              
Sbjct: 61  TIIKAAADLISQEEPDYQYLAARLTVFHLRKKAYGQ-FEPPKLYNH----------VLHL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKIGKYDKNLVNDYNHKEFEEMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGKIYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +A  L  K  E  + K    FYN +S+F    +TP +    T   Q SSC L  
Sbjct: 170 QFLYILIAACLFAKYPEHIRMKYIKNFYNAISTFKISLATPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R +G+ I        G IPF K      
Sbjct: 230 CDDNLDSINATSSAIVKYVAQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G D  R   ++    I  L  +R+  
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIT 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V DL++ +  +   FE  Y  YE+          RKI ++ L+  M+  
Sbjct: 350 GKYITLFSPSDVPDLYENFFSDQNKFEYLYHKYEQ----NHNIRHRKIKSIELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     +  +  SNLC EIT        +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNADHCNSHSPFNSALAPIRQSNLCLEITLPTKPLNNINDINGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL     NN  D  +LA  I   +R LD ++D   + I  A+ S    R++G+G++ +
Sbjct: 466 ALNLGNI--NNLQDLSELADLI---IRALDALLDYQKYPIHAAQHSAINRRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H + AS  LA+E+GA   FK + + QG+ PI
Sbjct: 521 AYYLAKNKVRYSDGSANTLTHRTFEAIQYHLLKASNNLAKEKGACIWFKDTTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDD----IINEPLHYDWEHLRKSIKQYGLRNSTVSALMPSETSSQIANATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    L +K++ +G    V         ++   +  ++  +  + G              
Sbjct: 637 PPRGYLSIKASKNGILRQVIPDF-----KQLASNYELLWQIPNNQG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-------KKLDFIYRQAWLMG 896
                        ++     QK+IDQ+ S NL  D           K+L      A+ +G
Sbjct: 678 ------------YLKLVGIMQKFIDQSISTNLNYDPNRFPGSKVPIKQLIADLLYAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLK 917
           +KT YY  +R  +S  + TL+
Sbjct: 726 IKTLYYHNTRDGSSETQETLQ 746


>gi|145629253|ref|ZP_01785052.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|144978756|gb|EDJ88479.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|309750763|gb|ADO80747.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2866]
          Length = 756

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 192/802 (23%), Positives = 330/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|56460471|ref|YP_155752.1| ribonucleotide-diphosphate reductase subunit alpha [Idiomarina
           loihiensis L2TR]
 gi|56179481|gb|AAV82203.1| Ribonucleotide reductase, alpha subunit [Idiomarina loihiensis
           L2TR]
          Length = 776

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 209/842 (24%), Positives = 337/842 (40%), Gaps = 97/842 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+  
Sbjct: 1   MNEQLYVTKRSGEREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR+                E   LY +   + 
Sbjct: 61  TIIKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKF----------EPPRLYDQ-VKKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + E      L E   + +   +   L + RD  F Y  ++ L ++Y +   + G   E  
Sbjct: 110 VAEHRYDEHLLEDYTEAEFDQMDEILDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYPKSTRMDYVKRFYDAASEFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 AGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++          +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRTMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EFE  Y  YE+     E    ++I A+ L+   +  
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFERLYLQYEQD----ESIRKKRIKAIELFGLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLSHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL       +F      +    AVR LD+++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGKIENLGEF-----ENLADLAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS+ LA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKHGVKYSDGSANGLVHQTFEAIQYYLMQASMNLAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L +V DE        L WD+L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKKDLDKVCDE-----PLHLDWDKLRADIKQHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P    + +KS+  G    V     N + K   LW                   +IP++ 
Sbjct: 636 EPPRGFVSIKSSKDGVTKQVVPDYENLKDKYELLW-------------------QIPNN- 675

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAW 893
                          +E     QK++DQ  S N   D PS         K+L      A+
Sbjct: 676 ------------KGYLELVGIMQKFVDQTISANTNYD-PSKFQAGKVPMKQLLQDLLTAY 722

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-- 951
            +G+KT YY  +R   +  +S +    G   A     P               D +C   
Sbjct: 723 KLGVKTLYYHNTRDGAADNQSDIAARKG--AAASQAQPTEVII--------EEDDDCAGG 772

Query: 952 VC 953
            C
Sbjct: 773 AC 774


>gi|304387411|ref|ZP_07369602.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338504|gb|EFM04623.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 764

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 199/794 (25%), Positives = 331/794 (41%), Gaps = 81/794 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 8   TPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHE 67

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+      Y+ P             ++  + 
Sbjct: 68  TIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGE-YEPPHLY----------DHVKKL 116

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +     R + E     +   L   + +ERD +F Y  ++ L  +Y +   +     E P
Sbjct: 117 TDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETP 176

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 177 QFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 236

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGL + I G   +  G IPF K+     
Sbjct: 237 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAV 296

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 297 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 356

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++  
Sbjct: 357 GGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQE 412

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  VH SNLC EI         +N  + E A+C L 
Sbjct: 413 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 472

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L       VR LD ++D   + +E A+ S    R++G+G++ +
Sbjct: 473 AFNLGALNS-----LDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINY 527

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PI
Sbjct: 528 AYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPI 587

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +          W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 588 DTYKKDL----DAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIE 643

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + LK 
Sbjct: 644 PPRGLVTVKASKDGILKQVVPEF--------------------------------ETLKN 671

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
            + T +++      ++     QK++DQ+ S N   D         S K++      A+  
Sbjct: 672 AYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKY 731

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY  +R   
Sbjct: 732 GVKTLYYHNTRDGA 745


>gi|109898788|ref|YP_662043.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas atlantica T6c]
 gi|109701069|gb|ABG40989.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 771

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 203/840 (24%), Positives = 328/840 (39%), Gaps = 98/840 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  KL +    G   S + +++  ++  A  GL +VS   V  + +   YDG+   D+  
Sbjct: 1   MNNKLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI  + P+Y  + AR  +  LR++     ++ P    H              
Sbjct: 61  TLIRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALFAH----------VTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E     + L     + +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFADYPKDSRMEYIKRFYDATSKFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 AGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   +LFSP +V  L+D +  +   FE  Y  YE+     +     +I AV L+   +  
Sbjct: 350 DQHISLFSPSDVPGLYDAFFADQPKFEELYVKYEQDDSIRK----TQIKAVELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      +  A     AVR LDN++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGAIES-----LEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N      WD L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DKICNEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ VKS+  G    V   + + + K   LW      DL  +DG +           
Sbjct: 637 PPRGHISVKSSKDGVLKQVVPEYELLKDKYELLW------DLPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                                QK++DQ  S N   D           K L      A+ +
Sbjct: 681 ----------------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLLTAYQL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
           G+KT YY  +R                  A        ST  +   +    D +C    C
Sbjct: 725 GVKTLYYHNTRDGA---------------ADTSQQELKSTQFVPQEAVVEEDDDCAGGAC 769


>gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA)
           [Haemophilus influenzae Rd KW20]
          Length = 781

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 194/810 (23%), Positives = 336/810 (41%), Gaps = 79/810 (9%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++K    +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G
Sbjct: 18  NNNKKAHTMNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEG 77

Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +  SD+   +I ++  LI K+ P+Y  + AR  +  LR++             H +   L
Sbjct: 78  IRTSDIHETIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRL 127

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HI 309
           Y ++  + +      + L +     +   +   + + RD  F Y  ++ L  +Y +   +
Sbjct: 128 Y-DHVKKLVRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRV 186

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            G   E  Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q
Sbjct: 187 TGEIYESAQFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQ 246

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
            SSC L    D L  I               G+G +   +R LG+ I G      G IPF
Sbjct: 247 FSSCVLIECDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPF 306

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
            K       + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  
Sbjct: 307 YKYFQTAVKSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNK 366

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVA 544
           L  +R+ + +  TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV 
Sbjct: 367 LMYQRLIKGSEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVE 422

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSE 595
           ++  ++     TG  +I   D CN  SP    V  V  SNLC EI         +N  + 
Sbjct: 423 IFSLLMQERASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENG 482

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E A+C L + NL         + D+L      AVR LD ++D   + +  AK+S+   R+
Sbjct: 483 EIALCTLSAFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRS 537

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G++ +   L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + 
Sbjct: 538 LGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETT 597

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +G+ PID+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I
Sbjct: 598 YAKGILPIDTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQI 653

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              +  I+P   ++ +K++  G    V     N +      +  ++ D+  +DG      
Sbjct: 654 SNATNGIEPPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG------ 702

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFI 888
                                +      QK++DQA S N   D    +        L   
Sbjct: 703 --------------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKD 742

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              A+  GLKT YY  +R      +  L  
Sbjct: 743 LLTAYKYGLKTLYYQNTRDGAEDVQEDLDD 772


>gi|113461339|ref|YP_719408.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 129PT]
 gi|112823382|gb|ABI25471.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Haemophilus somnus 129PT]
          Length = 756

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 194/803 (24%), Positives = 331/803 (41%), Gaps = 79/803 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H E   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    ++            AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGALENLDEL-----EELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   ++ Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDIDNLTK----EPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPDYENLGE-----NYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK+IDQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           LKT YY  +R      +  L   
Sbjct: 726 LKTLYYQNTRDGAEDMQEDLDDA 748


>gi|170718503|ref|YP_001783715.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 2336]
 gi|168826632|gb|ACA32003.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           somnus 2336]
          Length = 756

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 194/803 (24%), Positives = 331/803 (41%), Gaps = 79/803 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H E   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAVFHLRKKAYG----------HFEPPKLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    ++            AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGALENLDEL-----EELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   ++ Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNNVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDIDNLTK----EPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N  +     +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPDYENLGE-----NYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK+IDQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           LKT YY  +R      +  L   
Sbjct: 726 LKTLYYQNTRDGAEDMQEDLDDA 748


>gi|91793307|ref|YP_562958.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           denitrificans OS217]
 gi|91715309|gb|ABE55235.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella denitrificans OS217]
          Length = 762

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 191/803 (23%), Positives = 328/803 (40%), Gaps = 79/803 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   + +    G   S +  ++  ++  +  GL++VS   V   ++   +DG+    +  
Sbjct: 1   MNTNMTVTKRSGERESIDLDKIHRVITWSTKGLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  V AR  +  LR++     ++ P             ++  R 
Sbjct: 61  TIIKAAADLISPDSPDYQFVAARLAVFHLRKKAYGQ-FEPPSLV----------DHVTRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + +       +L  +   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VELGKYDKNILTDYTREELEVMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +     + K   +FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFARYPAETRLKYIKDFYDATSNFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CDDSLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  ++D +     EFE  Y  YE+          + + AV L+  M+  
Sbjct: 350 GQDISLFSPSDVPGMYDAFFADQVEFERLYLQYEQDTRIRR----KTLKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPSVAPIKQSNLCLEIALPTKPLKNIDDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       D  +L      AVR LDN++D   + I  A+  +   R +G+G++ F
Sbjct: 466 ALNLGAIK-----DLSELEPLADLAVRALDNLLDYQDYPIISAQLGSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 ANYLAKNGKKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +    + W+ L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKRDL----DAICSEPLHMDWEALRKDILEHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V     +EL+        ++ ++  +DG +            
Sbjct: 637 PPRGLISVKASKDGQLKQVVPDF-DELRD----SYELLWNMPNNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
                               QK++DQA S N   D    +        L      A+ +G
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLGAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY  +R   S +   +  V
Sbjct: 726 VKTLYYHNTRDGASDQFDEITAV 748


>gi|148825801|ref|YP_001290554.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|148715961|gb|ABQ98171.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|309972946|gb|ADO96147.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2846]
          Length = 756

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|145634464|ref|ZP_01790174.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229846891|ref|ZP_04466998.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
 gi|145268444|gb|EDK08438.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229810380|gb|EEP46099.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
          Length = 756

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|68250261|ref|YP_249373.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 86-028NP]
 gi|68058460|gb|AAX88713.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae 86-028NP]
          Length = 756

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|229845067|ref|ZP_04465203.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
 gi|229812039|gb|EEP47732.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
          Length = 756

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 330/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|319896902|ref|YP_004135097.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
 gi|317432406|emb|CBY80761.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
          Length = 756

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKQLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|329123257|ref|ZP_08251825.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|327471466|gb|EGF16914.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 756

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|170726651|ref|YP_001760677.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           woodyi ATCC 51908]
 gi|169811998|gb|ACA86582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           woodyi ATCC 51908]
          Length = 762

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 198/810 (24%), Positives = 341/810 (42%), Gaps = 83/810 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   LK+    G     +  ++  ++  A   L++VS   V   ++   +DG+    +  
Sbjct: 1   MNSNLKVTKRSGEREIIDLDKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  ++AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADLISPESPDYQFLSARLAIFHLRKKAFGQF----------EPPKLY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     + +     +L  L   + + RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 VEMGKYDTHILQDYTREELDILDGYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPQETRLDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G +PF K      
Sbjct: 230 CGDSLDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ Q
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQINKLMYQRLIQ 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L+D + +   EF+  Y  YE      +    +++ A  L+  M+  
Sbjct: 350 GGVISLFSPSDVPGLYDAFFEDQDEFDRLYLQYEADDSIRK----KQVKASELFGLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLDNVNDPNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A       +  +L      AVR LDN++D   + +  A+KS+   R +G+G++ F
Sbjct: 466 ALNLGAIK-----NLAELEPLADLAVRALDNLLDYQDYPLIAAQKSSMNRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  +F  + + +GV PI
Sbjct: 521 ANYLAKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPAFHETTYSKGVLPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L  + DE        + W+ L++ + T G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRALDNICDE-----PLHMDWETLRQDIVTHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VKS+  G    V         ++  +   ++  +  +DG +           
Sbjct: 636 EPPRGLISVKSSKDGQLKQVVPDF-----EKYQYSYELLWQMPNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK--------LDFIYRQAWL 894
                                QK++DQA S N   D PS           L      A+ 
Sbjct: 681 ----------------LVGLMQKFVDQAISANTNYD-PSRFDNQKVPMQVLLKDLLNAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +G+KT YY  +R   S +   +  V+ + +
Sbjct: 724 LGVKTLYYHNTRDGASDKHDDMVSVEKEDD 753


>gi|315126540|ref|YP_004068543.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
 gi|315015055|gb|ADT68393.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
          Length = 760

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 202/806 (25%), Positives = 327/806 (40%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+  
Sbjct: 1   MNQQLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++   I KE P+Y  + AR  +  LR++     ++ P+            ++    
Sbjct: 61  TIIKAAADQISKESPDYQYLAARLAVFHLRKKAYGQ-FEPPRLF----------DHVTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+      L     + +L  L   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEQKRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFSDYPRDTRIDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLSNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++ +          AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDELEELA-----ELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +   + E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHRTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G    V         +R      ++ D+  +DG +           
Sbjct: 636 EPPRGHISVKASKDGILKQVVPEY-----ERLKDSYELLWDIPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                                QK+IDQ  S N   D           K L      A+ +
Sbjct: 681 ----------------LVGIMQKFIDQTISANTNYDPNKYEGGRVPMKVLLKDLLGAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S  +     V+ 
Sbjct: 725 GVKTLYYHNTRDGASDAQEDAPEVED 750


>gi|319776093|ref|YP_004138581.1| ribonucleoside-diphosphate reductase subunit alpha [Haemophilus
           influenzae F3047]
 gi|317450684|emb|CBY86904.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3047]
          Length = 756

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASGIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|90409250|ref|ZP_01217355.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90309648|gb|EAS37828.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 757

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 210/805 (26%), Positives = 339/805 (42%), Gaps = 81/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  K+ +   +G+    + +++  ++  A  GL++VS   +   ++   YDG+  +D+  
Sbjct: 1   MNKKIFVTKRNGSTECLDLEKIHRVITWASEGLENVSVSQIELNSHIQFYDGIRTNDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + A   +  LR++        P             E+  + 
Sbjct: 61  TIIKAAADLISEDSPDYQYLAAHLAIFHLRKKAYRRF--TPPSVF---------EHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +G     L E     +   +   + ++RD  F Y  ++ L  +Y +   + G   E P
Sbjct: 110 VSKGKYDAHLLEDYTKKEFEKMEKFIDHKRDLTFSYAAVKQLEGKYLVQNRVTGEIYESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +K +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAACLFSNYDKKIRLDYVQRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  A            G+G +   +R LG+HI G      G IPF K      
Sbjct: 230 ADDSLDSINAAASSIVKYVSQRAGIGINAGRIRALGSHIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  LF +R+  
Sbjct: 290 KSCSQGGVRGGAATIFYPLWHLEVESLLVLKNNRGIDSNRVRHLDYGVQLSRLFYQRLID 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + +   EFE  Y  YE      +      ISAV L+  ++  
Sbjct: 350 KKDITLFSPSDVPGLYDAFFEDQDEFERLYTLYEGDDSIRQN----SISAVNLFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +     E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLRHIMDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A  +      D+L      AVR LDN++D   + I  AK S+   R +G+G++ +
Sbjct: 466 ALNLGAIKS-----LDELEPLSELAVRALDNLLDYQDYPIIAAKNSSMARRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I F+ + AS +LA+ERGA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANNLTHRTFEAIQFYLLKASNKLAKERGACPKFNETRYSQGILPI 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    +  + DE        L W+ L+K +   G+RNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKKSIDSICDEKY-----HLDWETLRKDIVKHGLRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + +K++  G    V        K R+ +   ++ D+  + G             
Sbjct: 636 EPPRGFISIKASKDGILKQVVPEFE---KYRENY--ELLWDIPNNKG------------- 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
                         I      QK+IDQA S N   D       + S   L      A+ M
Sbjct: 678 -------------YINLVGIMQKFIDQAISANTNYDPKRFPNEKVSMTTLLGDLLTAYKM 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           GLKT YY  +R   S E    +  D
Sbjct: 725 GLKTLYYHNTRDGASDENVIAETDD 749


>gi|319779631|ref|YP_004130544.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
 gi|317109655|gb|ADU92401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
          Length = 758

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 334/802 (41%), Gaps = 81/802 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  DG     + +++  +++ A +GL +VS+  V   +    YDG+   D++  +I
Sbjct: 5   TISVIKRDGRSEPLDLEKIHRVIDWAANGLDNVSTSQVELNSQIQFYDGIQTQDIQETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  +R++              H    LY ++    I++
Sbjct: 65  KAAADLISTDTPDYQYLAARLAMINIRKKAYGD----------HVPPHLY-DHVSSLIQK 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAF 320
           GV  + +       +   + + L ++RD+ F Y+ +  +  +Y +   ++G   E PQ  
Sbjct: 114 GVYDKNIISDYSKDEFEEMNSYLVHDRDWDFSYVAVMQMQGKYLVQNRVSGEIYETPQFL 173

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L  K  +  +     EFY+  S+F     TP +    T   Q SSC L    D
Sbjct: 174 YVLVAACLFAKYPKDVRLKYIREFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R  G+ I G   +  G IPF K         
Sbjct: 234 SLDSINATSSAIVRYVSQRAGIGINAGRIRAEGSPIRGGEARHTGCIPFYKHFQTAVKCC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 294 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNRLMYERLVKGQN 353

Query: 499 WTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D + ++   FE  Y  YE+     +    R++ +  L+  ++     
Sbjct: 354 ITLFSPSDVPGLYDAFFEDQDTFEQLYTKYEQDPSIRK----RQVKSNDLFSMLMQERAS 409

Query: 556 TGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D CN           +  SNLC EIT        +N    E A+C L + N
Sbjct: 410 TGRIYIQNVDHCNTHGAFDPKKAPIRQSNLCLEITLPTKPLDDINDPKGEIALCTLSAFN 469

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A  +      D+L       VR LD ++D   + I+ A+ S    R++G+G++ F   
Sbjct: 470 LGAIDS-----LDELEHLADLVVRALDALLDYQDYPIKAAQISTMNRRSLGVGVINFAYY 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+      I  ++ E I ++ + AS+ LA+E G   +F  + + QGV PID+ 
Sbjct: 525 LAKNGAKYSDGSGNAITHQTFEAIQYYLLKASMNLAKEFGPCPAFDETKYSQGVLPIDTY 584

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +           RL WD L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 KKSVDDF----CKEPLRLDWDTLRVDIVKYGLRNSTLTALMPSETSSQISNATNGIEPPR 640

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK +  G    +                                     +LK  + 
Sbjct: 641 GLITVKQSKDGILKQIVPDY--------------------------------KELKDKYE 668

Query: 847 TAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLK 898
           T +++  M   ++     QK++DQ+ S N   D    +       +L     +A+  G+K
Sbjct: 669 TLWQLPNMDGYLQIVGIMQKFVDQSISANTNYDPKKFENGLVPMMQLIKDLLKAYKYGVK 728

Query: 899 TTYYLRSRSATSVEKSTLKGVD 920
           T YY  +R  +   + T K  D
Sbjct: 729 TLYYHNTRDGSDDIQDTSKEDD 750


>gi|260582635|ref|ZP_05850424.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
 gi|260094307|gb|EEW78206.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
          Length = 756

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDAQEDLDD 747


>gi|332993181|gb|AEF03236.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp.
           SN2]
          Length = 773

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/840 (23%), Positives = 333/840 (39%), Gaps = 96/840 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G   S + +++  +V  A  GL++VS   V  +     +DG++ S++  
Sbjct: 1   MNNSLSVTKRNGEQESIDLEKIHKVVTWAAKGLENVSVSQVEIKAQIQFFDGINTSEIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI  + P+Y  + AR  +  LR++     ++ P             E+    
Sbjct: 61  TLIKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALF----------EHVTNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEMGKYDKHLIEDYTAEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYPKDTRMSYIRRFYDAASTFKLSLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   +LFSP +V  L+D +  +   FE  Y  YE   +  +    ++I A+ L+   +  
Sbjct: 350 DDYISLFSPSDVPGLYDAFFADQEKFERLYVQYENDDNIRK----KRIKAMELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  S     V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+       AVR LDN++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDEFEELSDLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   N      WD L++ +KT G+RNS   A+ P+ T + I   +  ++
Sbjct: 581 DSYKKDL----DGVCNEPLHYDWDALREEIKTHGLRNSTLSALMPSETSSQISNATNGVE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +KS+  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGFISIKSSKDGVLKQVVPEY-----ERLRDQYELLWDIPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR--------QAWLM 895
                               QK+IDQ  S N   D PS    + +            + +
Sbjct: 681 ---------------LVGIMQKFIDQTISANTNYD-PSRYDGNKVPMKLLLKDLLTTYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
           G+KT YY  +R   +         D     V   +P      + I      D +C    C
Sbjct: 725 GVKTLYYHNTRDGAT---------DASALDVKANEPLPRQEEVVI----EEDDDCAGGAC 771


>gi|332306883|ref|YP_004434734.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174212|gb|AEE23466.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 790

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/830 (24%), Positives = 333/830 (40%), Gaps = 82/830 (9%)

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           ++++++   +   L +    G   S + +++  ++  A  GL +VS   V  + +   YD
Sbjct: 11  KNYNQNGVYMNNNLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYD 70

Query: 192 GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           G+   D+   LI S+  LI  + P+Y  + AR  +  LR++     ++ P    H     
Sbjct: 71  GIKTEDIHETLIRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALFAH----- 124

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--H 308
                  + IE     + L     + +   + + + + RD  F Y  ++ L  +Y +   
Sbjct: 125 -----VTQMIEMQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNR 179

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           + G   E  Q  ++ VA  L     +  +      FY+  S F     TP +    T   
Sbjct: 180 VTGEIYESAQFLYILVAACLFADYPKDTRMDYIKRFYDATSKFKISLPTPIMAGVRTPTR 239

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           Q SSC L    D L  I               G+G +   +R LG+ I G      G IP
Sbjct: 240 QFSSCVLIEAGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIP 299

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F K       + +QGG R GA   +   WH++VE  L L+ N G +  R   ++      
Sbjct: 300 FYKYFQTAVKSCSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFN 359

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAV 543
            L  +R+ ++   +LFSP +V  L+D +  +   FE  Y  YE+     +     ++ AV
Sbjct: 360 KLMYQRLIKDQHISLFSPSDVPGLYDAFFADQAKFEELYVKYEQDDSIRK----TQVKAV 415

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSS 594
            L+   +     TG  ++   D CN  SP    V  +  SNLC EI         +N  +
Sbjct: 416 ELFSLFMQERASTGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDEN 475

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E A+C L + NL A  +      +  A     AVR LDN++D   + +  A  +    R
Sbjct: 476 GEIALCTLSAFNLGAIES-----VEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRR 530

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G++ F   L    + Y+   A  +   + E + +H + AS  LA+E+GA   F  +
Sbjct: 531 TLGIGVINFAYYLAKNGVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDET 590

Query: 715 LWDQGVFPIDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            + QG+ PID+    L ++ DE          WD L+  +K  G+RNS   A+ P+ T +
Sbjct: 591 TYSQGIMPIDTYKKDLDKICDE-----PLHCDWDSLRADIKQYGLRNSTLSALMPSETSS 645

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   +  I+P   ++ VKS+  G    V         +R      ++ DL  +DG +  
Sbjct: 646 QISNATNGIEPPRGHISVKSSKDGVLKQVVPEY-----ERLKDKYELLWDLPSNDGYLQ- 699

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLD 886
                                         QK++DQ  S N   D           K L 
Sbjct: 700 -------------------------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLL 734

Query: 887 FIYRQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                A+ +G+KT YY  +R  A    +  LK          V + +   
Sbjct: 735 KDLLTAYQLGVKTLYYHNTRDGAADTSQQELKSAQFVPQEAVVEEDDDCA 784


>gi|30995466|ref|NP_439801.2| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae Rd KW20]
 gi|260581254|ref|ZP_05849072.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
 gi|1172938|sp|P43754|RIR1_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|260092081|gb|EEW76026.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
          Length = 756

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 332/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            +  TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GSEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ +K++  G    V     N +      +  ++ D+  +DG              
Sbjct: 637 PPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  L  
Sbjct: 726 LKTLYYQNTRDGAEDVQEDLDD 747


>gi|319760601|ref|YP_004124539.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039315|gb|ADV33865.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 763

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 199/819 (24%), Positives = 346/819 (42%), Gaps = 84/819 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N +++  ++  A  GL+ +S   V   ++   Y+G+  SD++ 
Sbjct: 1   MNQTLLVTKRDGHHEPINLEKIHRVINWAAQGLEKISVSQVELRSHIQFYNGIKTSDIQE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI KE P+Y  + AR  +  LR++               E   LY ++  R 
Sbjct: 61  TIIKAAADLISKEEPDYQYLAARLSVFHLRKKAYGQF----------EPPKLY-DHVLRL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L       +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VKIGKYDKHLLNDYTHNEFEQMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++  A  L  K  +  +     +FYN +S+F    +TP +    T   Q SSC L  
Sbjct: 170 QFLYILTAACLFAKYPKNTRMDYIKKFYNAISTFKISLATPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R +G+ I        G IPF K      
Sbjct: 230 CDDSLDSINATSSAIVKYVAQRAGIGINAGRIRAIGSPIRNGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   ++    I  L  +R+  
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEIENLLVLKNNRGVESNRIRHLDYGVQINKLMYQRLIT 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V DL++ +  +   F+  Y  YE      ++    KI A+ L+  M+  
Sbjct: 350 GKHITLFSPADVPDLYESFFSDQNLFDYLYHKYENDHKIRQL----KIKAIELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     +  +  SNLC EIT        +N ++ E A+C L 
Sbjct: 406 RASTGRIYIQHTDHCNTHSPFNSALAPIRQSNLCLEITLPTKPLNNINDTNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL      N  + D L+      VR LD ++D   + +  A+ S    R++G+G++ +
Sbjct: 466 AFNL-----GNLNNLDDLSELSTLIVRALDALLDYQSYPVLAAQYSAKNRRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS  LA+E+GA + F  + + QG+ PI
Sbjct: 521 AYYLAKHGVRYSDGSANTLTHHTFEAIQYYLLKASNLLAKEKGACAWFDDTSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  ++   R  W+EL+ ++K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DYIISEPLRYNWEELRNQIKQYGLRNSTVSALMPSETSSQISNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         ++   +  ++ ++  + G              
Sbjct: 637 PPRGYISIKASKDGILRQVVP-----NCEKLASNYELLWNIPNNQG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                        +E     QK+IDQ+ S N+  D PS         K+L      A+ +
Sbjct: 678 ------------YLELVGIMQKFIDQSISTNMNYD-PSCFPESKVPIKQLLSDLLYAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           G+KT YY  +R   S    T K ++   N  P T  + +
Sbjct: 725 GIKTLYYHNTRDGFS---ETQKKIEYNNNHQPNTCASDA 760


>gi|152979131|ref|YP_001344760.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           succinogenes 130Z]
 gi|150840854|gb|ABR74825.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinobacillus
           succinogenes 130Z]
          Length = 756

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 194/802 (24%), Positives = 327/802 (40%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G     +  +L  ++  A  GL +VS   V   ++   Y+G+  +D+  
Sbjct: 1   MNKTLMVTKRNGKQEPLDLDKLHRVITWAAEGLHNVSVSQVELRSHIQFYEGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI K+ P+Y  + AR  +  LR++     ++ P             E+  + 
Sbjct: 61  TIIKSAADLISKDAPDYQYLAARLSVFHLRKKAFGQ-FEPPHLY----------EHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L       +   + + L + RD  F Y   + L  +Y +   + G   E  
Sbjct: 110 VEMGKYDQALLTDYGREEWEQMNDFLDHWRDMNFSYAATKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  +  +  +      FY+  SSF     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFSQYPKATRLDYVRRFYDATSSFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGQIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +  +   FE  Y  YE+     +    R + A+ L+  ++  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDKFEQLYVQYEQDPAIRK----RSVKAIELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D  N  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIHNVDHTNTHSPFDPSVAPVRQSNLCLEIALPTKPLQNINDEDGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L +    AVR LD ++D   + +  A++S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLENLDELDNLADLAVRALDALLDYQDYPVAAARRSSLGRRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   ++ Y++  A  +   + E I ++ + AS+ LA+E+G    F  + + QG+ PI
Sbjct: 521 AYYLAKNNMRYSNGSANALTHRTFEAIQYYLLKASMNLAKEQGKCELFHETRYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +      W+ L+  ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDV----DGLTDEPLHYDWETLRADIQKYGLRNSTVTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V     N  +     +  ++ D+   DG              
Sbjct: 637 PPRGHISVKASKDGILKQVVPDYENLGE-----NYELLWDMPTMDG-------------- 677

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
                        +      QK++DQA S N   D    +        L      A+  G
Sbjct: 678 ------------YLHLVGIMQKFVDQAISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           LKT YY  +R      +  +  
Sbjct: 726 LKTLYYQNTRDGAEDAQEDMDD 747


>gi|239826136|ref|YP_002948760.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           WCH70]
 gi|239806429|gb|ACS23494.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. WCH70]
          Length = 761

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/808 (32%), Positives = 395/808 (48%), Gaps = 92/808 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201
            + I  ++G    F+ +RL   +         + +   +    + +   D LS   +   
Sbjct: 7   TIIITSENGQTKPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSAEQITNY 66

Query: 202 LIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP---EYFC 257
           LI    + I + EP +  V A   L+KL +E          K   ++ +  Y    E   
Sbjct: 67  LILEGLSYISEAEPEWTFVCAHIYLQKLYKEAA--------KQRGYDAKQRYGSLYELIT 118

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM 316
             + +GV  R L ++    ++  L   +  ++D  F Y+GL+ L DRY     + +  E+
Sbjct: 119 TLVSKGVYDRSLLDNYSKEEINELGKLIDPDKDKLFTYIGLRTLADRYLARDYDRNLYEL 178

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  F+ +AM L  KE +  +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ 
Sbjct: 179 PQERFLIIAMTLMAKEPKHRRFTFIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFID 238

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+T
Sbjct: 239 TVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNT 298

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++V 
Sbjct: 299 AVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVE 358

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKE--FEIAYENYERQADRGEIKVFRKISAVALWR 547
           +   W LF P EV       L D Y +E       E Y +     E     K+ A+ + +
Sbjct: 359 KRGDWYLFDPHEVRKVMGFSLEDFYDEEKGSGSFREKYWQCVQE-ERLSKEKVPAIEIMK 417

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            ++    E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S              
Sbjct: 418 SIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTVVEKQYTKDGKI 477

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +     D L   I   +R+LDNVID+N   + +AK 
Sbjct: 478 IIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNNIPVLQAKF 532

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI AS+ELA+E+G+Y
Sbjct: 533 TNQKYRAVGLGTFGWHHLLALKGIRWESDEAVEYADKLYEKIAYLAIKASMELAKEKGSY 592

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +            D+   +RT    WD LK++V   GMRN   MAIAP
Sbjct: 593 PAFPGSDWQTGAYF-----------DKRGYHRTEEFDWDALKEQVAKHGMRNGYVMAIAP 641

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +              V +L     W            
Sbjct: 642 NASTSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNAETTW------------ 685

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y+ +    K+L  
Sbjct: 686 ---------------YYKSAYHIDQHWSIKQNAARQRHIDQAISFNFYVLNTIKAKELLD 730

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ++  AW  GLKTTYY+RS S+T  E  +
Sbjct: 731 LHLTAWKSGLKTTYYVRSTSSTIDECES 758


>gi|261493905|ref|ZP_05990415.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261310438|gb|EEY11631.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 756

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 193/803 (24%), Positives = 322/803 (40%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++     ++ P             E+  + 
Sbjct: 61  TIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLY----------EHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K     +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L++ +  +   FE  Y  YE+     +    RK+ AV L+  ++  
Sbjct: 350 GGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI               E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ +
Sbjct: 466 AFNLGTL-----SNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ PI
Sbjct: 521 AYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  DEL         W++L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KEIDELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                      LK 
Sbjct: 637 PPRGYISVKASKDGILKQVVPEYER--------------------------------LKA 664

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
            +   ++I  M   +      QK++DQA S N   D           K L      A+  
Sbjct: 665 YYELLWDIPNMDGYLHLVGIMQKFVDQAISANTNYDPDRFAEAKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           GLKT YY  +R      +  L  
Sbjct: 725 GLKTLYYQNTRDGAEDVQDDLDE 747


>gi|332534564|ref|ZP_08410399.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035984|gb|EGI72463.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 760

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/806 (24%), Positives = 331/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+  
Sbjct: 1   MNQQLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++   I KE P+Y  + AR  +  LR++     ++ P+            ++  + 
Sbjct: 61  TIIKAAADQISKESPDYQYLAARLAVFHLRKKAYGQ-FEPPRLF----------DHVTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +      L     + +L  L   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VGDKRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFSDYPRETRTDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+HI        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQAEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++ +          AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDELEELA-----ELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDTLRASIKEHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G    V         +R      ++ D+  +DG +           
Sbjct: 636 EPPRGHISVKASKDGILKQVVPEY-----ERLKDQYELLWDIPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLM 895
                                QK++DQ  S N   D    +        L      A+ +
Sbjct: 681 ----------------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMQVLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S  +     V+ 
Sbjct: 725 GVKTLYYHNTRDGASDSQEDAPEVED 750


>gi|254361271|ref|ZP_04977414.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261495802|ref|ZP_05992237.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|110735341|gb|ABG89241.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica]
 gi|153092767|gb|EDN73810.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261308536|gb|EEY09804.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 756

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 195/807 (24%), Positives = 325/807 (40%), Gaps = 82/807 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++     ++ P             E+  + 
Sbjct: 61  TIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQ-FEPPHLY----------EHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K     +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +V  L++ +  +   FE  Y  YE+     +    RK+ AV L+  ++  
Sbjct: 350 GGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQ----RKVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI               E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ +
Sbjct: 466 AFNLGTL-----SNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ PI
Sbjct: 521 AYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  DEL         W++L++ +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KEIDELT-QEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                      LK 
Sbjct: 637 PPRGYISVKASKDGILKQVVPEYER--------------------------------LKA 664

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
            +   ++I  M   +      QK++DQA S N   D           K L      A+  
Sbjct: 665 YYELLWDIPNMDGYLHLVGIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKY 724

Query: 896 GLKTTYYLRSRSAT-SVEKSTLKGVDG 921
           GLKT YY  +R     V+    +G  G
Sbjct: 725 GLKTLYYQNTRDGAEDVQDDLDEGCAG 751


>gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 688

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 231/643 (35%), Positives = 348/643 (54%), Gaps = 53/643 (8%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++ Y+RDF +++ G + L   Y L ++G  +E PQ   MRV +G+ +++ +    A++ Y
Sbjct: 81  EIVYDRDFDYDFFGFKTLERLYLLKVHGKVVERPQHMLMRVVVGIHMEDID---SAIKTY 137

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L+S   F  ++PTLFN+GT  PQLSS FL  + DD       LQ+  ++ K +G +   
Sbjct: 138 HLMSQRLFTHASPTLFNAGTPRPQLSSSFLICMRDDSIES--TLQKCDVIRKSAGSISVS 195

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              ++G             GV+P L V          GGK+ G    YLE WH D+ EFL
Sbjct: 196 VHNIQGT-----------NGVVPMLDVDQG-------GGKKNGPFAVYLEPWHADIFEFL 237

Query: 464 DLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
            ++KN G  +  +   M  A WIPDLFM+RV  +  W+LF P+E   L D +G EFE  Y
Sbjct: 238 KIQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCPNEAPGLADCWGTEFERLY 297

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YER+         +   A   +  +LT   ETG P++ FKD CN +S QQ++G + SS
Sbjct: 298 TKYEREGK-----AKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNRKSNQQNLGTIKSS 352

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-------------ANNQFDYDKLASTIRTAV 629
           +LCT +   +S  ET VCNL SI L                  +  FDYDKLA       
Sbjct: 353 SLCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYFDYDKLAEVTAIVT 412

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             LD +ID N + +E A+ SN  HR IG+G+ G   A  LL +P+ SPEA ++  +  E 
Sbjct: 413 NDLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQKLNKDIFET 472

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I +HA+ AS ELA    AY ++KGS   +G+   D   +            ++R  WD L
Sbjct: 473 IYYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTP----------SNRWDWDFL 522

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++ +   G+RNS  +++ PTA+ + I G ++S +P   N+Y    +SG+  +VN  L+++
Sbjct: 523 REMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILVNKHLLHD 582

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L +  LW   +   +   +GSI N+  IPDD+K I+ TA+EI    +++ A  R  +IDQ
Sbjct: 583 LTEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVDRGCYIDQ 642

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
           +Q+LN+ L+EPS +KL  ++   W  GLKT  +YLRSR+ T V
Sbjct: 643 SQTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSRATTMV 685


>gi|119472402|ref|ZP_01614520.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
 gi|119444924|gb|EAW26222.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
          Length = 760

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 200/806 (24%), Positives = 331/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+  
Sbjct: 1   MNQQLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++   I KE P+Y  + AR  +  LR++     ++ P+            ++  + 
Sbjct: 61  TIIKAAADQISKESPDYQYLAARLAVFHLRKKAYGQ-FEPPRLF----------DHVTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +      L     + +   L   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VSDKRYDAHLLADYTEQEFDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFADYPRETRVSYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+HI        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDTLYVKYEQD----ESIRKKRIKAIELFSVFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++ +          AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGALESLDELEELA-----ELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+K ++  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKTDLDKICDE-----PLHLDWDALRKSIQEHGMRNSTLSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G    V         +R   +  ++ D+  +DG +           
Sbjct: 636 EPPRGHISVKASKDGILKQVVPEY-----ERLKDNYELLWDIPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLM 895
                                QK++DQ  S N   D           K L      A+ +
Sbjct: 681 ----------------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMKVLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S  +     V+ 
Sbjct: 725 GVKTLYYHNTRDGASDAQDDTPEVED 750


>gi|238897539|ref|YP_002923218.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465296|gb|ACQ67070.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 762

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 189/802 (23%), Positives = 320/802 (39%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG   S +  ++  ++  A  GL  VS   V   +    YDG+   D+  
Sbjct: 1   MNHSLLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++        P             E+  + 
Sbjct: 61  TMIKAAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPP-----------LFEHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L E   + +   +   + + RD  F Y  ++ L  +Y +   +N    E  
Sbjct: 110 VKMGKYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESA 169

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R  G+ I        G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+  +     EF+  Y  YE   D       +KI AV L+  ++  
Sbjct: 350 GEEITLFSPSDVPGLYAAFFSDQSEFQRLYVQYEADPDIRH----KKIKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDEKGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      + R LD ++D   + I  A++S  + R +G+G++ F
Sbjct: 466 AFNLGAINS-----LDELQELATLSARALDALLDYQHYPIPAAQRSAVSRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + +G+ PI
Sbjct: 521 AYYLARNGVRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +              W  L++ +   G+R+S   ++ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDD----IHQEPLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V       LK+       ++ ++  +DG +            
Sbjct: 637 PPRGYVSIKASKDGILRQVVPE-YESLKE----AYELLWNIPDNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                               QK++DQ+ S N   D       +   K+L      A+  G
Sbjct: 681 ---------------LVGLMQKFVDQSISANTNYDPRRFSNGKVPMKQLLTDLLNAYKWG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY  +R      ++ +K 
Sbjct: 726 IKTLYYHNTRDGADDVQADVKE 747


>gi|168179223|ref|ZP_02613887.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669564|gb|EDT81540.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
          Length = 763

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/815 (30%), Positives = 400/815 (49%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++ +  I   +R+LDNVI +N  
Sbjct: 477 ENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FKGS W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKGSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|221134588|ref|ZP_03560893.1| ribonucleotide-diphosphate reductase subunit alpha [Glaciecola sp.
           HTCC2999]
          Length = 773

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 201/829 (24%), Positives = 328/829 (39%), Gaps = 84/829 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A   L +VS   V  + +   +DG+S   +  
Sbjct: 1   MNKQLSVTKRDGVTEAIDLDKIHKVITWAAKDLHNVSVSQVEIKAHIQFFDGISTEVIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI  + P+Y  + AR  +  LR++       +P K           ++    
Sbjct: 61  TLIKSAADLISTDSPDYQYLAARLAIFHLRKKAYGQF--EPPKLF---------DHVKSM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L       +   +   L + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VERGKYDEHLLADYTAEEFEAMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLVAACLFANYPKATRLDYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 AGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYTRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +  +   F+  Y  YE      +    + I A+ L+   +  
Sbjct: 350 NQNITLFSPSDVPGLYDAFFADQDKFDELYVKYENDPSIRK----KSIKAMELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  ++   D CN  SP    V  V  SNLC EI L +           E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLEHVMDPEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD+++D   + +  A+ ++   R +G+G++ F
Sbjct: 466 AFNLGAIKS-----LDELEELADLAVRALDSLLDYQDYPVPAARNASLGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA E+G    F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDHSANGLIHKTFEAIQYYLMKASNNLAIEQGPCPLFNETTYSQGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +       +    L WD L++ V   G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDIDN----ICDEPLHLDWDSLRESVVKHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P   ++ +KS+  G    V     N + K   LW      DL  +DG +           
Sbjct: 637 PPRGHISIKSSKDGVLKQVVPDYENLKDKYELLW------DLPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                             +  QK++DQ  S N   D PS         K L       + 
Sbjct: 681 ----------------LCAIMQKFVDQTISANTSYD-PSKYEGNKVPMKLLIKDLLTTYK 723

Query: 895 MGLKTTYYLRSRSATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +G+KT YY  +R        + L  +     A  V +      + G   
Sbjct: 724 LGIKTLYYHNTRDGAGESSDADLSAIKQTPQAQVVIEEEDDGCAGGACK 772


>gi|77360361|ref|YP_339936.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875272|emb|CAI86493.1| ribonucleoside diphosphate reductase 1, alpha subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 760

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 202/806 (25%), Positives = 333/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+  
Sbjct: 1   MNQQLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++   I KE P+Y  ++AR  +  LR++     ++ P+            ++  + 
Sbjct: 61  TIIKAAADQISKESPDYQYLSARLAVFHLRKKAYGQ-FEPPRLF----------DHVTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           + +      L     + +L  L   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VGDKRYDAHLLVDYTEQELDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        + A    FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFADYPRDTRIAYIKRFYDAISLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+HI        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + +   EF+  Y  YE+     E    ++I A+ L+      
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLDNVNDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++ +          AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIESLDELEELA-----ELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P 
Sbjct: 521 AYYLAKNGKRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPT 580

Query: 724 DSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D+    L ++ DE        L WD L+  +K  GMRNS   A+ P+ T + I   +  I
Sbjct: 581 DTYKRDLDKICDE-----PLHLDWDALRASIKEHGMRNSTVSALMPSETSSQISNATNGI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ VK++  G    V         +R   +  ++ D+  +DG +           
Sbjct: 636 EPPRGHISVKASKDGILKQVVPEY-----ERLKDNYELLWDIPSNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLM 895
                                QK+IDQ+ S N   D           K L      A+ +
Sbjct: 681 ----------------LVGIMQKFIDQSISANTNYDPGKFEGGRVPMKVLLKDLLSAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S  +     ++ 
Sbjct: 725 GVKTLYYHNTRDGASDAQEDTPDLED 750


>gi|290473789|ref|YP_003466663.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           bovienii SS-2004]
 gi|289173096|emb|CBJ79869.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 763

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 197/809 (24%), Positives = 326/809 (40%), Gaps = 79/809 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  + AR  +  LR++                      ++  R 
Sbjct: 61  TMIKAAADLISGDAPDYQYLAARLAIFHLRKKAYGQFEPPA-----------LHDHVVRM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VNLGKYDKHLLEDYSKEEFEQMDSFINHLRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     ++ +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSTYPKETRLSYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRDGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +     +I AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQDEFERLYTQYESDVTIRK----ERIKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPMNNINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A       +  +L      AVR LD+++D   + I  AK+ +   R +G+G++ F
Sbjct: 466 AFNLGAIN-----NLTELEELAELAVRALDSLLDYQDYPIIAAKQGSMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEKGACPWFGETTYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        + W+ L+  ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKTL----DTLTREPLHMDWETLRNDIRQHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V          R      ++  +   DG +            
Sbjct: 637 PPRGYISIKASKDGILRQVVPEY-----NRLKGAYELLWQMPGTDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                               QK+IDQ+ S N   D    P+GK    +L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKYG 725

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +KT YY  +R      +  L+ V    ++
Sbjct: 726 VKTLYYHNTRDGAEDVQGDLEEVVESADS 754


>gi|260913957|ref|ZP_05920431.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632044|gb|EEX50221.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 756

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 198/790 (25%), Positives = 328/790 (41%), Gaps = 79/790 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG L   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKALMVTKRDGHLEPIDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI KE P+Y  + AR  +  LR++             H +   LY E+  + 
Sbjct: 61  TIIKAAADLISKESPDYQYLAARLAVFHLRKKAYG----------HFDPPRLY-EHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G     L       +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMGKYDASLLTDYCREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPIWHLEAESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            A  TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GADITLFSPSDVPGLYEAFFADQTKFEELYLKYEQDPTIRK----RAVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI          +  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ +
Sbjct: 466 AFNL-----GKLENLDELESLADLAVRALDALLDYQDYPVRAAKRSSLGRRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDIDTLTQ----EPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V    V E +      E +                +P++   
Sbjct: 637 PPRGHVSVKASKDGILKQV----VPEYETLGENYELLWE--------------LPNNDGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMG 896
           +H                  QK++DQA S N   D    +        L      A+  G
Sbjct: 679 LH-------------LVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYG 725

Query: 897 LKTTYYLRSR 906
           LKT YY  +R
Sbjct: 726 LKTLYYQNTR 735


>gi|138894465|ref|YP_001124918.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265978|gb|ABO66173.1| Ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 785

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 258/802 (32%), Positives = 390/802 (48%), Gaps = 92/802 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETALIF 204
           ++ D G   S + +    ++E+A +G   +S +      ++ +     ++   L    I 
Sbjct: 34  VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 93

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--- 260
              + I E+EP +  V AR  L  + RE          +   ++ +  Y +++   +   
Sbjct: 94  EGLSYISEEEPEWTFVCARLYLRMMYREAA--------RQRGYDARERYGDFYSLIVSLT 145

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
           E+GV + LL E     ++    + L  ++D  F Y+GL+ L DRY       R  E+PQ 
Sbjct: 146 EQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQE 205

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L + E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 206 RFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 266 DSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVS 325

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + + ++
Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNDSRLSK-EKVPAIEVMKSIM 444

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S                 
Sbjct: 445 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 504

Query: 594 --SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +  F        I   +R+LDNVID+N   + +A  +N 
Sbjct: 505 KIPGDFVVCNLSSINLARAVTDGVF-----ERLIPIQLRMLDNVIDLNNIPVLQASLTNK 559

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAV   DE  E I++ AI AS+ELA+E+G+Y  F
Sbjct: 560 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLAIQASMELAKEKGSYPGF 619

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +            +           WD LK+ V   GMRN   MA+AP A+
Sbjct: 620 SGSDWQTGAYF-----------ERRGYKNHGERDWDRLKREVARYGMRNGYLMAVAPNAS 668

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP ++ +Y +              V +L ++  W               
Sbjct: 669 TSIIAGSTASIDPIFRKVYAEEKKDYKI----PVTVPDLNEQTTW--------------- 709

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I   + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 710 ------------YYKSAYYIDQRWSIRQNAARQRHIDQAISFNFYVMNTIKAKELLELHL 757

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  GLKTTYY+RS S T  E
Sbjct: 758 TAWKSGLKTTYYVRSTSGTMEE 779


>gi|332141552|ref|YP_004427290.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551574|gb|AEA98292.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 773

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 193/795 (24%), Positives = 322/795 (40%), Gaps = 81/795 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G   S + +++  +V  A  GL +VS   V  +     YDG++ S++  
Sbjct: 1   MNNNLFVTKRNGEKESIDLEKIHKVVTWAAKGLNNVSVSQVEIKAQIQFYDGINTSEIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI  + P+Y  + AR  +  LR++     ++ P             E+  + 
Sbjct: 61  TLIKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQ-FEPPALF----------EHVGKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VDMGKYDKHLLEDYTPEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYDKATRMDYIRRFYDAASTFKLSLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   +LFSP +V  L+D +  +   FE  Y  YE      +    ++I A+ L+   +  
Sbjct: 350 DGYISLFSPSDVPGLYDAFFADQEKFEELYVKYENDDSIRK----KQIKAMELFSLFMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  S     V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+       AVR LDN++D   + +  A  +    R +G+G++ F
Sbjct: 466 AFNLGAIKS-----VDEFEELADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS         +   N      WD L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DSYKKDL----DSVCNEPLHYDWDALREEIKAHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +KS+  G    V         +       ++ D+  +DG +            
Sbjct: 637 PPRGFISIKSSKDGVLKQVVPEY-----ETLRDQYELLWDIPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR--------QAWLM 895
                               QK+IDQ  S N   D PS  + + +            + +
Sbjct: 681 ---------------LVGIMQKFIDQTISANTNYD-PSRYEGNKVPMKLLLKDLLTTYKL 724

Query: 896 GLKTTYYLRSRSATS 910
           G+KT YY  +R   S
Sbjct: 725 GVKTLYYHNTRDGAS 739


>gi|170758616|ref|YP_001788132.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405605|gb|ACA54016.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 763

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/815 (30%), Positives = 398/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   I             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKIIQNGKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKTKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTTFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEEKIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++ +  I   +R+LDNVI +N  
Sbjct: 477 DNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|322514735|ref|ZP_08067761.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119330|gb|EFX91446.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 756

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 192/801 (23%), Positives = 318/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +    G    F+  ++  ++  A  GLQ+VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAMFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDQALLTDYTEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+  SSF     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVAACLFSKYPKATRLDYVKRFYDATSSFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQSAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGIEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  E   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVDGLYEAFFAEQDKFEQLYLQYEQDPTIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + +E AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVEAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   +          W+ L+  ++  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DNYKKELDNLTQ----EPLHYDWESLRAEIQQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSVKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDSQQDL 745


>gi|257454183|ref|ZP_05619453.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448356|gb|EEV23329.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 762

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 195/804 (24%), Positives = 329/804 (40%), Gaps = 83/804 (10%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +   DG L   +  ++  ++E A  GL +VS   V   ++   YD ++   +   +
Sbjct: 5   EDILVQKRDGRLEKIDLDKIHRVIEWAAEGLDNVSVSQVEISSHIQFYDKITTKSIHETI 64

Query: 203 IFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI    P+Y  + AR  +  LR+      ++ P             ++  +  +
Sbjct: 65  IKSAADLISAATPDYQYLAARLAIFHLRKIAFGQ-FEPPHLF----------DHVTKLTQ 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
           EG     + +     +   L + + + RD +F Y  ++ +  +Y +         E PQ 
Sbjct: 114 EGRYDAHILQDFSKEEFDILNDYIDHNRDLSFAYAAVKQMEGKYLVQDRVTKQVFESPQF 173

Query: 320 FFMRVAMGL-ALKETEKEKRA-----VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            +M V M L A  + + +K A       FY+  S+F     TP +    T   Q SSC L
Sbjct: 174 LYMLVGMCLFASYDKQYDKAARLDYIKRFYDTTSTFKISLPTPIMSGVRTPSRQFSSCVL 233

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G   +  G IPF K+   
Sbjct: 234 IECDDSLDSINATTSAIVRYVSQRAGIGVNAGRIRALGSPIRGGEAQHTGCIPFYKLFQT 293

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I     +R+
Sbjct: 294 AVKCCSQGGVRGGAATLFYPIWHLEVENLLVLKNNRGVEDNRVRHMDYGVQINKTIYQRL 353

Query: 494 TQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +N   TLFSP +V  L+D +     EFE  YE YE+     E    R + A  L+  M+
Sbjct: 354 IKNQNVTLFSPSDVPGLYDAFFADQAEFERLYEQYEQD----ESIRKRSVPAQELFSLMM 409

Query: 551 TMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCN 601
                TG  ++   D CN  SP    V  +  SNLC EI         +N  S E A+C 
Sbjct: 410 QERASTGRIYVQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTQPLDNINDESGEIALCT 469

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L  INL           + +       VR LD ++D   + +  AK  +   R +G+G++
Sbjct: 470 LSGINLGEINQ-----LEDIKEPAELIVRALDALLDYQDYPVIAAKNGSMKRRTLGIGVI 524

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            +   L      Y+ P A+ +   + E + ++ + AS +LA+E+GA  +F  + + QG+ 
Sbjct: 525 NYAYYLAKNGTKYSDPTALGLTHRTFEALQYYLLVASNKLAKEQGACPAFGDTTYSQGIL 584

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+     +   +   N   +L W+ L+  +KT G+RNS   A+ P+ T + I   +  
Sbjct: 585 PIDTY----KADIDAICNEPLQLDWESLRHDIKTHGLRNSTLTALMPSETSSQIANATNG 640

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P    + VK++  G    V   +      +      ++  +  + G +          
Sbjct: 641 IEPPRGLVSVKASKDGILKQVVPEI-----DKLKDQYELLWQMPNNKGYLS--------- 686

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWL 894
                              +  QK+IDQ+ S N   D    +        +      A+ 
Sbjct: 687 -----------------LVAIMQKFIDQSISANTNYDPTKFEDSRVPMKVMIQDLLMAYK 729

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
           +G+KT YY  +R   +  +  L+ 
Sbjct: 730 LGVKTLYYHNTRDGANDAQDDLEN 753


>gi|118442856|ref|YP_878439.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           novyi NT]
 gi|118133312|gb|ABK60356.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           novyi NT]
          Length = 764

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/817 (30%), Positives = 393/817 (48%), Gaps = 102/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   +G       ++ + +V  AC GL       +  ++     +G+S  +++  LI
Sbjct: 2   DIKVRKRNGEYEKLCVEKTKKMVSLACEGLDGCDPLELEIDSRIQFRNGMSTKEIQKILI 61

Query: 204 FSSRTLI--------EKEP------NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            ++   +        +  P      N+  V AR L   L +E       K  +   H   
Sbjct: 62  QTAIEKVIYIDKNNYDNSPSKKTNINWQYVAARLLAFDLYKEA------KINRNYSHFGY 115

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
             +     + +  G+  + L E+  D ++  L+  ++ +RD  F Y GL++L DRY +  
Sbjct: 116 GDFLSLVKKLVNMGLYGKYLIENYSDEEIKELSEYIEPKRDELFNYEGLKLLNDRYLIKG 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            NG  +E+PQ  FM +AM LA+ E +     A +FY+L+S      +TPTL N+GT   Q
Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNRVYFAKKFYDLMSKLKMTVATPTLGNAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  IPD
Sbjct: 296 IKLYNDTAVAVDQLGKRKGGASITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355

Query: 488 LFMKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           +FMKR+     W+LF P  +       L D +  E    +     + +  E      +S 
Sbjct: 356 IFMKRLLNRENWSLFDPYTIQKLMGYKLEDYFDDEENKEFTKRYLECEANENLPRDTVSC 415

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------ 596
           + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  E      
Sbjct: 416 LDVMKKIMKSAVETGAPFIFFRDTVNRANPNKHKGMIYSSNLCHEIAQNMSESELISEEV 475

Query: 597 -----------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                               CNL SINL           D+L  +I   +R+LDNVI +N
Sbjct: 476 TDKNGFNEVVSRIKSGDMVTCNLNSINLSKVSR------DELKESIPLQIRMLDNVISLN 529

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ AI AS+
Sbjct: 530 RLPVKESAITSDKYRAIGLGTSGYHQYLASNKIKWESEEHIKEVDSLFEDIAYEAIKASM 589

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY+ F+GS W  G +                    +   W++L++ +   G+R
Sbjct: 590 ELAKEKGAYAEFEGSEWQSGKY--------------FERRGYNSERWNKLREDIAKYGIR 635

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L   + W   
Sbjct: 636 NGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEKKG----SFTPKTAPDLNNENFW--- 688

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                    +  A  I+  W I++ + RQK IDQ+QS NLY   
Sbjct: 689 ------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNLYITP 724

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           E   K +  +Y ++W  G+KT YY+R++S    E S+
Sbjct: 725 EVKAKDILNMYTESWRQGIKTIYYVRNKSIEMDECSS 761


>gi|226950224|ref|YP_002805315.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843054|gb|ACO85720.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 763

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/815 (30%), Positives = 399/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRA-VEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+     +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYGKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHRGMIYSSNLCHEIAQNMSESQLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++ +  I   +R+LDNVI +N  
Sbjct: 477 ENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FKGS W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKGSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|187778604|ref|ZP_02995077.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
 gi|187772229|gb|EDU36031.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
          Length = 763

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/815 (30%), Positives = 400/815 (49%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   +G       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRNGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L E+  D ++  L+  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIENYSDEEIKELSKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A  FY++LS      +TPTL N+GT   QLS
Sbjct: 177 GEVLELPQERFMTIAMHLAIPEGDKKIFYAKGFYDILSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++TV D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGASITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           M+R+ +   W+LF P  V       L D +       +     + ++        + A+ 
Sbjct: 357 MERLEKREQWSLFDPYMVEKIMDYKLEDYFDDVDCKEFTKRYLECEKNINIPRNTVPALD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
           + +K++    ETG P+I F+D  NI +P +H G+++SSNLC EI  N S  E        
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNIANPNKHKGMIYSSNLCHEIAQNMSESELVEEEIID 476

Query: 597 ---------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                             CNL SINL       + + +  +  I   +R+LDNVI +N  
Sbjct: 477 ENGYSEVVQRIKAGDMVTCNLNSINLS------KVEKEDFSKCIPLQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++A+ ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI AS+EL
Sbjct: 531 PVKEARVTSDKYRAIGLGTSGYHHFLVNNKIRWESDEHIKVADEIYEEIAYTAIKASMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FKGS W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKGSEWETGKY--------------FERRGYNSEKWQQLQSDIKRYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAARQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|295401052|ref|ZP_06811026.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976845|gb|EFG52449.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 761

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           I +++G    F+ +RL   +         + +   +    + +   D LS   +   LI 
Sbjct: 10  ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYI 260
              + I + EP +  V AR  L+KL +E          K   +E +  Y   +      +
Sbjct: 70  EGLSYISETEPEWTFVCARIYLQKLYKEAA--------KQRGYEAKQRYGSLYALITALV 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            +GV +  L       ++  L   +  ++D  F Y+GL+ L DRY     + +  E+PQ 
Sbjct: 122 SKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQE 181

Query: 320 FFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L  KE +  + A+  E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 182 RFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 242 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 301

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++V +  
Sbjct: 302 VDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRG 361

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV       L D Y +E       E Y +     E     K+ A+ + + ++
Sbjct: 362 DWYLFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQE-ERLSKEKVPAIEIMKSIM 420

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S                 
Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480

Query: 594 --SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +     D L   I   +R+LDNVID+N   + +A+ +N 
Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNHIPVLQAQLTNQ 535

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI +S+ELA+E+G+Y +F
Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +            ++    R     WD LKK+V   GMRN   MAIAP A+
Sbjct: 596 PGSDWQTGAYF-----------EKRGYRRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP +  +Y +              V +L     W               
Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNAETTW--------------- 685

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVVNTIKAKELLDLHL 733

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  GLKTTYY+RS S+   E  +
Sbjct: 734 TAWKAGLKTTYYVRSTSSIIDECES 758


>gi|312112172|ref|YP_003990488.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y4.1MC1]
 gi|311217273|gb|ADP75877.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y4.1MC1]
          Length = 761

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           I +++G    F+ +RL   +         + +   +    + +   D LS   +   LI 
Sbjct: 10  ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYI 260
              + I + EP +  V AR  L+KL +E          K   +E +  Y   +      +
Sbjct: 70  EGLSYISETEPEWTFVCARIYLQKLYKEAA--------KQRGYEAKQRYGSLYALITALV 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            +GV +  L       ++  L   +  ++D  F Y+GL+ L DRY     + +  E+PQ 
Sbjct: 122 SKGVYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQE 181

Query: 320 FFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L  KE +  + A+  E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 182 RFLIIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVD 241

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 242 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 301

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++V +  
Sbjct: 302 VDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRG 361

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV       L D Y +E       E Y +     E     K+ A+ + + ++
Sbjct: 362 DWYLFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQE-ERLSKEKVPAIEIMKSIM 420

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S                 
Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480

Query: 594 --SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +     D L   I   +R+LDNVID+N   + +A+ +N 
Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLISIQMRMLDNVIDLNHIPVLQAQLTNQ 535

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI +S+ELA+E+G+Y +F
Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +            ++    R     WD LKK+V   GMRN   MAIAP A+
Sbjct: 596 PGSDWQTGAYF-----------EKRGYRRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP +  +Y +              V +L     W               
Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKI----PVTVPDLNAETTW--------------- 685

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVMNTIKAKELLDLHL 733

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            AW  GLKTTYY+RS S+   E  +
Sbjct: 734 TAWKAGLKTTYYVRSTSSIIDECES 758


>gi|168184458|ref|ZP_02619122.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|237796250|ref|YP_002863802.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum Ba4 str. 657]
 gi|182672445|gb|EDT84406.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|229261891|gb|ACQ52924.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 763

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/815 (31%), Positives = 400/815 (49%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++ +  I   +R+LDNVI +N  
Sbjct: 477 ENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKISWESDEHIKVADEIYEEIAYIAIESSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FKGS W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKGSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R+RS    E ++
Sbjct: 726 KAKEILNMYMESWRQGVKTIYYVRNRSLEMDECTS 760


>gi|304414249|ref|ZP_07395617.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283463|gb|EFL91859.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 762

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 199/805 (24%), Positives = 327/805 (40%), Gaps = 85/805 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +V+ A  GL +VS   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVVDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  + P+Y  + AR  +  LR++        P             E+  + 
Sbjct: 61  TIIKAAADLISTDAPDYQYLAARLAVFHLRKKAYGQFEPPP-----------LFEHVSKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L       +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VAMKKYDQHLLADYSAAEFAEMESFIDHWRDLNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L      + +      FYN +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFSSYPRESRLDYVKRFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  A            G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINAASSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+  
Sbjct: 350 GEDITLFSPSDVPGLYDAFFADQTEFERLYMKYEQDQTIRQ----QRIKAVDLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTQPLNDINDETGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A     +            AVR LD ++D   + I  A+  +   R +G+G++  
Sbjct: 466 AFNLGAIDRLEEL-----EELATLAVRALDALLDYQDYPIAAARNGSLGRRTLGIGVINL 520

Query: 664 QSALHLLHIPYASPE----AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
              L    + Y++ +    A  +   + E I ++ + AS +LA+E+GA   F  + + QG
Sbjct: 521 AYYLAKNGVGYSNADLKKNANSLTHRTFEAIQYYLLKASNDLAREKGACPWFDQTTYAQG 580

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           + PID+         +   N    L W+ L++ +K  G+RNS   A+ P+ T + I   +
Sbjct: 581 LLPIDTYKKYL----DEICNEPLHLDWEGLRQNIKQWGLRNSTLSALMPSETSSQISNAT 636

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K++  G    V         +R      ++ D+  +DG +        
Sbjct: 637 NGIEPPRGYVSIKASKDGILRQVVPEY-----ERLKEHYQLLWDIPNNDGYLQ------- 684

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQ 891
                                   QK++DQA S N   D P+         K+L      
Sbjct: 685 -------------------LVGIMQKFVDQAISANTNYD-PTRFSDNKVPMKQLLKDLLT 724

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTL 916
           A+ +G+KT YY  +R      +  +
Sbjct: 725 AYKLGIKTLYYHNTRDGADDVQGDI 749


>gi|196247936|ref|ZP_03146638.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
 gi|196212720|gb|EDY07477.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
          Length = 760

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 257/802 (32%), Positives = 388/802 (48%), Gaps = 92/802 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETALIF 204
           ++ D G   S + +    ++E+A +G   +S +      ++ +     ++   L    I 
Sbjct: 9   VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 68

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI--- 260
              + I E+EP +  V AR  L  + RE          +   ++ +  Y +++   +   
Sbjct: 69  EGLSYISEEEPEWTFVCARLYLRMMYREAA--------RQRGYDARERYGDFYSLIVSLT 120

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
           E+GV + LL E     ++    + L  ++D  F Y+GL+ L DRY       R  E+PQ 
Sbjct: 121 EQGVYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQE 180

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L + E  K +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 181 RFLIIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 240

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 241 DSLQAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVS 300

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 301 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 360

Query: 498 GWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV       L D Y +E       E Y +  +   +    K+ A+ + + ++
Sbjct: 361 DWYLFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNEPRLSK-EKVPAIEVMKSIM 419

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------- 593
               E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S                 
Sbjct: 420 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 479

Query: 594 --SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +       L   I   +R+LDNVID+N   + +A  +N 
Sbjct: 480 KIPGDFVVCNLSSINLARAVTDGV-----LERLIPIQLRMLDNVIDLNNIPVLQASLTNK 534

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAV   DE  E I++  I AS+ELA+E+G+Y  F
Sbjct: 535 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLVIQASMELAKEKGSYPGF 594

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +            +           WD LK+ V   GMRN   MA+AP A+
Sbjct: 595 SGSDWQTGAYF-----------ERRGYKNHGERDWDRLKREVARYGMRNGYLMAVAPNAS 643

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP ++ +Y +              V +L ++  W               
Sbjct: 644 TSIIAGSTASIDPIFRKVYAEEKKDYKI----PVTVPDLNEQTTW--------------- 684

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I   + RQ  IDQA S N Y ++    K+L  ++ 
Sbjct: 685 ------------YYKSAYYIDQRWSIRQNAARQHHIDQAISFNFYVMNTIKAKELLELHL 732

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  GLKTTYY+RS S T  E
Sbjct: 733 TAWKSGLKTTYYVRSTSGTMEE 754


>gi|153939013|ref|YP_001392092.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum F str. Langeland]
 gi|152934909|gb|ABS40407.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum F str. Langeland]
          Length = 763

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/815 (30%), Positives = 397/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++    I   +R+LDNVI +N  
Sbjct: 477 GNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|322807125|emb|CBZ04699.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 763

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/815 (30%), Positives = 397/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELEVDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   I             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKIIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDLREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++    I   +R+LDNVI +N  
Sbjct: 477 GNGYSEIVQRIKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|326571162|gb|EGE21186.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC7]
          Length = 758

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 194/804 (24%), Positives = 317/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V M L  +  + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYMLVGMCLFARYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|238018469|ref|ZP_04598895.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
 gi|237864940|gb|EEP66230.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
          Length = 776

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/817 (30%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 18  EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 77

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 78  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 132

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 133 -FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 191

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E E + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 192 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 251

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 252 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 311

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 312 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 371

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I    +
Sbjct: 372 FMERMIARENFTLFDPHEILAVKGYALEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 427

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 428 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 487

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 488 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 541

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+++AI AS+
Sbjct: 542 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYAIKASM 601

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 602 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLAADVAKYGIR 647

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 648 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNNKTFW--- 700

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 701 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 736

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 737 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 773


>gi|148380774|ref|YP_001255315.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|153930834|ref|YP_001385058.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A str. ATCC 19397]
 gi|148290258|emb|CAL84377.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152926878|gb|ABS32378.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A str. ATCC 19397]
          Length = 763

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/815 (30%), Positives = 397/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y +   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYQLVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGNN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRKEFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++    I   +R+LDNVI +N  
Sbjct: 477 GNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYIESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|46143781|ref|ZP_00134248.2| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208466|ref|YP_001053691.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|190150314|ref|YP_001968839.1| ribonucleoside-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303251075|ref|ZP_07337261.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307245898|ref|ZP_07527983.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307252628|ref|ZP_07534521.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307254870|ref|ZP_07536695.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259313|ref|ZP_07541042.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307261474|ref|ZP_07543144.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263657|ref|ZP_07545268.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097258|gb|ABN74086.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915445|gb|ACE61697.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650085|gb|EFL80255.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853258|gb|EFM85478.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306859873|gb|EFM91893.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306862167|gb|EFM94136.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866680|gb|EFM98539.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306868826|gb|EFN00633.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871034|gb|EFN02767.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 756

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 185/801 (23%), Positives = 316/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  +  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + ++ AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKELDNLT----TEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQEDL 745



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
          K + V KRNG    FD  KI R I  A  
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAE 31


>gi|303253583|ref|ZP_07339721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247986|ref|ZP_07530016.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302647503|gb|EFL77721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855501|gb|EFM87674.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 756

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 185/801 (23%), Positives = 316/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAIKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  +  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + ++ AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFNETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKELDNLT----TEPLHYDWESLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQEDL 745



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
          K + V KRNG    FD  KI R I  A  
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAE 31


>gi|307250238|ref|ZP_07532193.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857724|gb|EFM89825.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 756

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 185/801 (23%), Positives = 316/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  +  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + ++ AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKELDNLT----TEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQQDL 745



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
          K + V KRNG    FD  KI R I  A  
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAE 31


>gi|93005950|ref|YP_580387.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           cryohalolentis K5]
 gi|92393628|gb|ABE74903.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter cryohalolentis K5]
          Length = 758

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 190/802 (23%), Positives = 331/802 (41%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              K+++   DG L      ++  ++E A  GL +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDKIQVTKRDGRLEPIELDKIHKVIEWAAHGLDNVSVSQVELKSHIQFYEGIKTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI ++ P+Y  + AR  +  LR+      +  P             ++  + 
Sbjct: 63  TIIKSAADLISEDTPDYQYLAARLAIFHLRKIAYNK-FTPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            + G   + +       +   L   L + RD    Y  ++ +  +Y +    + +  E P
Sbjct: 112 TDAGKYDQHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V M L  +  + E+      FY+  S F     TP +    T   Q SSC L  
Sbjct: 172 QFLYMLVGMCLFSRYEKSERMNYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ +
Sbjct: 292 KCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +   L+D + ++   FE  Y  YE           R+I A  L+  M+  
Sbjct: 352 GQDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPAIR----SRQIPAADLFSLMMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDATVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL      N  D ++ A  I   VR LD ++D   + ++ A+  +   R +G+G++ +
Sbjct: 468 AVNLGK--VENVSDIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ PI
Sbjct: 523 AYYLAKNGVRYSDDSAIGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DKICQEPLHLDWETLRGEITEHGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V    +N+LK        ++  +  +DG              
Sbjct: 639 PPRGLVSIKASKDGILKQVVPE-INKLKN----QYELLWQMPNNDG-------------- 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMG 896
                        ++  +  QK++DQ+ S N   D           K L      A+ +G
Sbjct: 680 ------------YLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKLG 727

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY  +R   +  ++ ++ 
Sbjct: 728 VKTLYYHNTRDGANDAQADMED 749


>gi|294794441|ref|ZP_06759577.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
 gi|294454771|gb|EFG23144.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
          Length = 767

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/817 (30%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 9   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 69  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 123

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 124 -FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E E + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I    +
Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 593 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLAADVAKYGIR 638

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW--- 691

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 764


>gi|71065820|ref|YP_264547.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           arcticus 273-4]
 gi|71038805|gb|AAZ19113.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter arcticus 273-4]
          Length = 758

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 187/802 (23%), Positives = 328/802 (40%), Gaps = 79/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              K+++   DG L   +  ++  ++E A   L++VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDKIQVTKRDGRLEPIDLDKIHKVIEWAAHNLENVSVSQVELKSHIQFYEGIKTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +  P+Y  + AR  +  LR+      +  P             ++  + 
Sbjct: 63  TIIKSAADLISETTPDYQYLAARLAIFHLRKIAY-NRFTPPHLY----------DHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            + G     +       +   L   L + RD    Y  ++ +  +Y +    + +  E P
Sbjct: 112 TDAGKYDAHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V M L     + E+      FY+  S F     TP +    T   Q SSC L  
Sbjct: 172 QFLYMLVGMCLFASYDKAERLDYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ +
Sbjct: 292 KCCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               +LFSP +   L+D + ++   FE  Y  YE           R+I A  L+  M+  
Sbjct: 352 GQDISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPTIR----SRQIPAADLFSLMMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N  + E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEAGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL      +  D ++ A  I   VR LD ++D   + ++ A+  +   R +G+G++ +
Sbjct: 468 AVNLGK--VEHVSDIEEPAELI---VRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ PI
Sbjct: 523 AYYLAKNGVRYSDDSALGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  + T G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DKICQEPLHLDWETLRTEITTHGLRNSTLTALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V   +      +      ++  +  +DG              
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEI-----DKLKDQYELLWQMPNNDG-------------- 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMG 896
                        ++  +  QK++DQ+ S N   D           K L      A+ MG
Sbjct: 680 ------------YLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKMG 727

Query: 897 LKTTYYLRSRSATSVEKSTLKG 918
           +KT YY  +R   +  ++ ++ 
Sbjct: 728 VKTLYYHNTRDGANDAQADMED 749


>gi|165976418|ref|YP_001652011.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876519|gb|ABY69567.1| ribonucleoside-diphosphate reductase, alpha chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 756

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 185/801 (23%), Positives = 316/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  +  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIIAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + ++ AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKELDNLT----TEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQEDL 745



 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFM---AVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V G     S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|170754701|ref|YP_001782420.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B1 str. Okra]
 gi|169119913|gb|ACA43749.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 763

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/815 (30%), Positives = 397/815 (48%), Gaps = 101/815 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   +             +   N+  V AR L   L +E       K  +  +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEA------KISRHYNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E +K+   A +FY++LS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDILSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++    I   +R+LDNVI +N  
Sbjct: 477 GNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G +                    +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGKY--------------FERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++                +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY   E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 726 KAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 760


>gi|307257035|ref|ZP_07538811.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864519|gb|EFM96426.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 756

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 185/801 (23%), Positives = 316/801 (39%), Gaps = 81/801 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+  
Sbjct: 1   MQKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR++     +  P   TH            + 
Sbjct: 61  TIIKAAADLISTETPDYQYLAARLAVFHLRKKAYGD-FTPPHLFTH----------IKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +  G   + L     + +   +   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  +  +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSSIRQGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV L+  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL         + D+        VR LD ++D   + ++ AK +    R++G+G++ +
Sbjct: 466 AFNLGTL-----QNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+
Sbjct: 581 DSYKKELDNLT----TEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + L+ 
Sbjct: 637 PPRGYVSIKASKDGILKQVVPEY--------------------------------EKLRS 664

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
            +   ++I D    ++     QK+IDQA S N   D    +        L      A+  
Sbjct: 665 QYELLWDIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           GLKT YY  +R      +  L
Sbjct: 725 GLKTLYYQNTRDGAEDAQEDL 745



 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
          K + V KRNG    FD  KI R I  A  
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAE 31


>gi|71282068|ref|YP_269048.1| ribonucleotide-diphosphate reductase subunit alpha [Colwellia
           psychrerythraea 34H]
 gi|71147808|gb|AAZ28281.1| ribonucleoside-diphosphate reductase, alpha subunit [Colwellia
           psychrerythraea 34H]
          Length = 756

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 196/796 (24%), Positives = 340/796 (42%), Gaps = 79/796 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G   + + +++  ++  A  GL+ VS   V  +++   YDG+   D+  
Sbjct: 1   MNNNLFVTKRNGEKETIDLEKIHRVIAWAADGLEQVSVSQVELKSHIQFYDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQF----------EPPALY-DHVVKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G   + L       D  ++++ + + RD  F Y  ++ L  +Y +   ++G   E  
Sbjct: 110 VEAGKYDQHLLADYTKDDFEHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESA 169

Query: 318 QAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K     + +   +FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVSACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + ++   FE  Y  YE      +    ++I A+ L+      
Sbjct: 350 GGSITLFSPSDVPGLYDAFFEDQEKFERLYVQYENDDSIRK----KRIKAIELFTLFAQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  ++   D CN  SP       +  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      D+L      AVR LD+++D   + I  A+ ++   R +G+G++ +
Sbjct: 466 AFNLGAIDS-----LDELEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y++  A  +   + E I F+ + A+ ELA+E+GA   F  +L  +G+ PI
Sbjct: 521 AYYLAKNGLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  D++       L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KTIDDIT-GEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V   +V E ++     E + +              IPD+   
Sbjct: 637 PPRGLISIKASKDG----VLKQVVPEYEKLKGNYELLWN--------------IPDNQGY 678

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-------KKLDFIYRQAWLMG 896
           +             E     QK++DQA S N   D           K++      A+ +G
Sbjct: 679 L-------------ELVGIMQKFVDQAISANTNYDPNKFEGGKVPVKQILKDILTAYKLG 725

Query: 897 LKTTYYLRSRSATSVE 912
           +KT YY  +R   S +
Sbjct: 726 VKTLYYHNTRDGASDD 741


>gi|313894419|ref|ZP_07827984.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313441243|gb|EFR59670.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 760

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 240/813 (29%), Positives = 393/813 (48%), Gaps = 98/813 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELELDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FPNLVHMLVEEKKYADFFVSEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E E + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           FM+R+     +TLF P E+       L D +  E E  +     + ++       ++ A+
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYALEDYFDTEDEKEFTKRYIECEQDPNLHGIQVPAL 415

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------ 591
            + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N            
Sbjct: 416 DMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAEEIIN 475

Query: 592 --------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                   +++ +   CNL SI+L           ++L   I   +R+LDNVI IN   +
Sbjct: 476 EDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISINQAPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+ELA+
Sbjct: 530 PESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASMELAK 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GAY +FKGS W+ G +                    +   W +L   V   G+RN   
Sbjct: 590 EKGAYPAFKGSEWETGAYFT--------------RRGYTSDRWKQLAADVAKYGIRNGYL 635

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MA+APT + +NI   +  IDP ++  +++                +L  +  W       
Sbjct: 636 MAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNNKTFW------- 684

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                               ++  A  ID  W I++   RQ+ IDQAQS NLY   +   
Sbjct: 685 --------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPQMKA 724

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 725 KEILDLYVEAYKQGVKTIYYIRNQSLEMDECTS 757


>gi|282849774|ref|ZP_06259158.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
 gi|282580711|gb|EFB86110.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
          Length = 760

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/817 (30%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E E + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I    +
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLAADVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 757


>gi|303230488|ref|ZP_07317247.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514854|gb|EFL56837.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 760

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/817 (29%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 62  QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E E + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L D Y     KEF   Y   E+  +   I    +
Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLASDVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSIEMDECTS 757


>gi|326561646|gb|EGE11983.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 103P14B1]
 gi|326573452|gb|EGE23420.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 101P30B1]
          Length = 758

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 193/804 (24%), Positives = 316/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +    + FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFANQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|296113066|ref|YP_003627004.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|295920760|gb|ADG61111.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|326562609|gb|EGE12920.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 46P47B1]
 gi|326577114|gb|EGE27008.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis O35E]
          Length = 758

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 193/804 (24%), Positives = 316/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|152997007|ref|YP_001341842.1| ribonucleotide-diphosphate reductase subunit alpha [Marinomonas sp.
           MWYL1]
 gi|150837931|gb|ABR71907.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           sp. MWYL1]
          Length = 754

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 192/804 (23%), Positives = 328/804 (40%), Gaps = 79/804 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +GT  + N +++  ++  A  GL +VS   V  +     ++G+  +D+   
Sbjct: 1   MSTLTVTKRNGTTENINLEKIHKVIAWAAEGLDNVSVSQVELKARIQFFEGIRTTDIHET 60

Query: 202 LIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI S+  LI +  P+Y  + AR  +  LR++     ++ P             ++    +
Sbjct: 61  LIKSAADLISESTPDYQYLAARLAIFHLRKKAFGD-FEPPHLY----------KHVKNLV 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQ 318
           E+      L E   + D   L   L + RD  F Y  ++ L  +Y +   + G+  E PQ
Sbjct: 110 EQKRYDAQLLEKYTEEDFNELNTFLDHSRDMDFSYAAVKQLEGKYLVQNRVTGAIYESPQ 169

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ VA  L  +  +KE+      FY+ +S F     TP +    T   Q SSC L   
Sbjct: 170 FIYILVAACLFAEYDKKERLNLIRRFYDAVSKFKISLPTPIMSGIRTPTRQFSSCVLIEC 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 230 GDSLDSINATSSAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ + 
Sbjct: 290 SCSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKG 349

Query: 497 AGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EF+  Y  YE+     +    + I A  L+    +  
Sbjct: 350 GNITLFSPSDVPGLYDAFFADQEEFDRLYTMYEQDPSIRK----QTIKATELFTLFASER 405

Query: 554 FETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLGS 604
             TG  ++   D CN  SP    V  V  SNLC EI L +           E A+C L +
Sbjct: 406 ASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLNSIDDKEGEIALCTLSA 465

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    ++             VR LD+++D   + I  A+++    R +G+G++ + 
Sbjct: 466 FNLGALENLDEL-----EELAELIVRALDSLLDYQNYPIPAAQRATELRRTLGVGVINYA 520

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A E+  ++ E I +  + AS +LA+E G   +F  + + +G+ PID
Sbjct: 521 YYLAKNGVKYSDGSANELTHKTFEAIQYFLLKASNKLAKEFGPCLAFNETTYSKGILPID 580

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           S     +      ++      W+ L+  + T G+RNS   A+ P+ T + I   +  I+P
Sbjct: 581 SYKKEIDN----IVSNELFYDWETLRNDIVTHGLRNSTLTALMPSETSSQISNATNGIEP 636

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K++  G    V         +R   +  ++  +  +DG +             
Sbjct: 637 PRGFVSIKASKDGILKQVVPEF-----ERLKENYELLWTIPSNDGYLQ------------ 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGL 897
                              QK++DQA S N   D           K +      A+ +G+
Sbjct: 680 --------------LVGIMQKFVDQAISANTNYDPQKFESQKVPMKVILKDLLTAYKLGV 725

Query: 898 KTTYYLRSRSATSVEKSTLKGVDG 921
           KT YY  +R     ++  +    G
Sbjct: 726 KTLYYHNTRDGADDKQEDMDDCAG 749


>gi|303228691|ref|ZP_07315516.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516671|gb|EFL58588.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 760

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 238/813 (29%), Positives = 392/813 (48%), Gaps = 98/813 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 62  QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E + + + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGKNKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           FM+R+     +TLF P E+       L D Y  +    +     + ++       ++ A+
Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDSNLHGIEVPAL 415

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------ 591
            + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N            
Sbjct: 416 DMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAEEIIN 475

Query: 592 --------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                   +++ +   CNL SI+L           ++L   I   +R+LDNVI IN   +
Sbjct: 476 KDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISINQAPV 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+ELA+
Sbjct: 530 PESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASMELAK 589

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GAY +FKGS W+ G +                    +   W +L   V   G+RN   
Sbjct: 590 EKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLASDVAKYGIRNGYL 635

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MA+APT + +NI   +  IDP ++  +++                +L  +  W       
Sbjct: 636 MAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW------- 684

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                               ++  A  ID  W I++   RQ+ IDQAQS NLY   +   
Sbjct: 685 --------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPQMKA 724

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 725 KEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 757


>gi|326560442|gb|EGE10824.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 7169]
 gi|326565823|gb|EGE15985.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC1]
          Length = 758

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 193/804 (24%), Positives = 316/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|326575650|gb|EGE25573.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis CO72]
          Length = 758

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 193/804 (24%), Positives = 316/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAKDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|294792662|ref|ZP_06757809.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
 gi|294456561|gb|EFG24924.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
          Length = 767

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/817 (29%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 9   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 69  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 123

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 124 -FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E + + K A +FY+L+S      +TPTL N+GT   QL
Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L + +     KEF   Y   E+  +   I    +
Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 593 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLAADVAKYGIR 638

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW--- 691

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 764


>gi|88859280|ref|ZP_01133920.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818297|gb|EAR28112.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
          Length = 760

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 198/800 (24%), Positives = 327/800 (40%), Gaps = 79/800 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+  
Sbjct: 1   MNKQLSVSKRDGRKELLDLDKIHRVIEWAAKGLNNVSVSQVELKSHIQFYDGIRTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++   I KE P+Y  + AR  +  LR++               E   LY ++  + 
Sbjct: 61  TIIKAAADQISKESPDYQFLAARLAIFHLRKKAYGQF----------EPPRLY-DHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+      L       +   L   L + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VEDNRYDAHLLADYTQAEFEQLDEVLDHNRDLTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  +  +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAASLFSKYPQSIRLDYIKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G D  R   ++       +   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKVMYSRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D + ++   FE  Y  YE+     +    ++I A+ L+   +  
Sbjct: 350 DDYITLFSPSDVPGLYDAFFEDQALFESLYVQYEQDPAIRK----KRIKAIELFSMFVQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  ++   D CN  SP    V  +  SNLC EI         +     E A+C L 
Sbjct: 406 RASTGRIYLQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLKHVMDEEGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  + ++            AVR LDN++D   + +  AK +    R +G+G++ +
Sbjct: 466 AFNLGAIDSLDEL-----EELAELAVRALDNLLDYQDYPVPAAKNATMNRRTLGVGVVNY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGKKYSDGSANALTHQTFEAIQYYLMKASNELAKEKGACPKFHETTYSQGLMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   +   RL WD L++ +K  GMRNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DQICSEPLRLDWDGLRQSIKQYGMRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   ++ VK++  G    V         +R      ++ D+  +DG +            
Sbjct: 637 PPRGHVSVKASKDGILKQVVPEY-----ERLKDQYELLWDIPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                               QK+IDQ  S N   D       +   K L      A+  G
Sbjct: 681 ---------------LVGIMQKFIDQTVSANTNYDPGKFEGGKVPMKLLLKDLLTAYKFG 725

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R   S  ++ +
Sbjct: 726 VKTLYYHNTRDGASDAQNEI 745


>gi|269798662|ref|YP_003312562.1| ribonucleoside-diphosphate reductase, subunit alpha [Veillonella
           parvula DSM 2008]
 gi|269095291|gb|ACZ25282.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula DSM 2008]
          Length = 760

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/817 (29%), Positives = 395/817 (48%), Gaps = 106/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E   T   K     +     
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEAAITRRYKAFGYGN----- 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 117 -FPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E + + K A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV-----SDLHDLYG----KEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+       L + +     KEF   Y   E+  +   I    +
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G +                    +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETGEYFT--------------RRGYTSDRWKQLAADVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY   
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K++  +Y +A+  G+KT YY+R++S    E ++
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDECTS 757


>gi|149911237|ref|ZP_01899860.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
 gi|149805691|gb|EDM65690.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
          Length = 757

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 204/803 (25%), Positives = 334/803 (41%), Gaps = 84/803 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +    G   + + +++  +++ A  GL +VS  +V  +++   YDG+   D+   +I 
Sbjct: 5   LLVTKRSGKQETIDLEKIHRVIKWAAKGLDNVSVSLVELKSHIQFYDGIRTEDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  ++AR  +  LR++               E   LY ++    ++  
Sbjct: 65  AAADLISEEAPDYQYLSARLAVFHLRKKAYGKF----------EPPALY-DHVKFNVDAL 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y L   I G   E PQ  +
Sbjct: 114 RYDAHLLADYTAEEFAEMDEFVDHWRDMNFSYGAIKQLEGKYLLQNRITGEIFESPQFLY 173

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY   S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAASLFATYDKSVRMDYVRRFYEATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINAVSNSIVKYVSQRAGIGINAGRIRALGSSIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+  N   
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQLNRLMYQRLIDNKDI 353

Query: 500 TLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE+     +    + I A  L+  ++     T
Sbjct: 354 TLFSPSDVDGLYDAFFQDQDEFERLYNLYEQDPSIRK----QTIKASELFALLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP    V  +  SNLC EI L +           E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPMQHPGDEDGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       D  +L +    AVR LD+++D   + +  A+KS    R++G+G++ +   L
Sbjct: 470 GAIK-----DLSELENLSDLAVRALDSLLDYQDYPMPAAEKSTMARRSLGIGVINYAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +   + E I F+ + AS+ L++ERG   +F  + + QG+ PID+  
Sbjct: 525 AKNGVKYSDGSANNLTHRTFEAIQFYLLKASMNLSKERGPCLAFHETTYAQGILPIDTYK 584

Query: 728 -LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L E+ DE        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 SSLDEICDE-----ALHLDWETLRSEIKEHGLRNSTLTALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + +K++  G    V     N    RD +   ++ ++  + G +               
Sbjct: 640 GLISIKASKDGILKQVVPDYENL---RDSY--ELLWNIPSNTGYLQ-------------- 680

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLK 898
                            QK++DQA S N   D         P    L  +   A+  GLK
Sbjct: 681 ------------LVGLMQKFVDQAISANTNYDPQRFPGQKVPMTTLLTDL-MLAYKYGLK 727

Query: 899 TTYYLRSRSATSVEKSTLKGVDG 921
           T YY  +R   S +   +K  +G
Sbjct: 728 TLYYHNTRDGAS-DVDVVKEDEG 749


>gi|51891460|ref|YP_074151.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855149|dbj|BAD39307.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 782

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 263/852 (30%), Positives = 398/852 (46%), Gaps = 121/852 (14%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +  +   P   +L +++D    ++     L  +V  AC  +    +   ++E    ++  
Sbjct: 21  NAVRPAQPYQGELNMLLD--ERVNVPEIDLTELVVSACRSIYPERASEFIAELRPLLHAT 78

Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQC 250
              S         +      +EP++  V AR  L+KL  E      Y +P     +E   
Sbjct: 79  TDRSQQMDLAARLAAEKTSVEEPDWQYVAARLYLQKLYGEAARNRGYHQPGYGDFYE--- 135

Query: 251 LYPEYFCRYIEEG--VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           L  +      E G  V    + E+  + ++  L   ++ ERD  F Y+GL  L DRY + 
Sbjct: 136 LVRQLHAMGDEAGNRVYGAYMIEAYSEEEIRELGRYIRPERDELFTYVGLLHLADRYLIK 195

Query: 309 -INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
             +G  +E+PQ  +M +AM LA  E+++   A  FY++LS      +TPT  N+ T  PQ
Sbjct: 196 GFHGEILELPQERYMHIAMHLASVESDRVTWAKRFYDVLSRQEMTVATPTFRNAATPLPQ 255

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+ TV D L  I+   Q  A ++K+ GG+G     +R  G+ I G  G + GVIP+
Sbjct: 256 LSSCFIDTVDDSLQSIYDTNQSFAQVSKHGGGMGIYIGKLRARGSAIRGRKGAAAGVIPW 315

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           ++  NDTAVAV+Q G RKGAV  +L+ WH ++ EFL L+ N GDDR R HD+     +PD
Sbjct: 316 VRNYNDTAVAVDQLGARKGAVSIWLDVWHKEIFEFLALKLNNGDDRMRAHDIFPGVCVPD 375

Query: 488 LFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            FM+ V Q+A W LF P EV       L D +G+E+E  Y      A   ++     + A
Sbjct: 376 AFMRAVEQDADWHLFCPHEVRTEMGFSLEDAWGEEWERRYRLCVEAAHADKLDA-TVVRA 434

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
             + + ML   +ETG P++ F+D  N  +P +H G+V+ SNLCTEI  N S         
Sbjct: 435 RQVAKAMLKSQYETGGPFLFFRDTVNRLNPNKHAGMVYCSNLCTEIAQNQSPTRLIEKTD 494

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SINL           +K+A  +  A+R+LDNVID+N + +
Sbjct: 495 DGEVITYRWQPGDFVVCNLASINLSKVHTE-----EKIAEVVPLAIRMLDNVIDLNFYPV 549

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +AK +N  +RAIGLG+ G+   L  L I + S + +  ADE  E ++++A+  S+ELA 
Sbjct: 550 PQAKITNKKYRAIGLGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYAVKTSIELAA 609

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y   KGS W+ G +               A+       W  L+++   +G+RN+  
Sbjct: 610 EKGCYPLCKGSDWETGEY--------------FALRGYESDRWQALRRQAAEVGLRNAYL 655

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAPT++ + +CG + S+DP Y  +Y +        +    L  +              
Sbjct: 656 LAIAPTSSTSLLCGTTASVDPIYDRVYNEGKKDQVIPLAAPGLSPK-------------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                +  A +ID  W I +A  RQ+ IDQ+QS NLY   +  G
Sbjct: 702 -----------------TYLYYKPAHQIDQTWSIRAAGVRQRHIDQSQSFNLYIRPDIKG 744

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +    +Y QAW  GLKT YY+RSRS    E                              
Sbjct: 745 RDFLNLYMQAWKNGLKTVYYVRSRSLEVTEA----------------------------- 775

Query: 943 SCTSDTECEVCQ 954
                 ECE CQ
Sbjct: 776 ------ECEACQ 781


>gi|326570478|gb|EGE20518.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC8]
          Length = 758

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 192/804 (23%), Positives = 316/804 (39%), Gaps = 83/804 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+  
Sbjct: 3   HIDTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI  E P+Y  + AR  +  LR+      ++ P    H              
Sbjct: 63  TIIKAAADLISVETPDYQYLAARLAIFHLRKIAYGK-FEPPHLYAH----------VKHL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
            E+G   + +       +   L + + + RD    Y  ++ +  +Y +         E P
Sbjct: 112 TEQGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESP 171

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ + M L     + ++      FY+  S+F+    TP +    T   Q SSC L  
Sbjct: 172 QFLYVLMGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I G   +  G IPF K+     
Sbjct: 232 CGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE      E    RK+ A  L+  ML  
Sbjct: 352 GTDITLFSPSDVPGLYEAFFADQETFERLYTQYEAD----ENIRKRKVPARDLFSLMLQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  +  SNLC EI         +N    E A+C L 
Sbjct: 408 RASTGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLS 467

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL             +       VR LD ++D   + +  AKK +   R +G+G++ +
Sbjct: 468 AINLGKIEK-----LSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINY 522

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PI
Sbjct: 523 AYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPI 582

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +        L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 583 DTYKKDL----DSICTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIE 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K++  G    V   +     +   LW                    IPD+  
Sbjct: 639 PPRGLVSIKASKDGILKQVVPEIERLASQYELLW-------------------NIPDNNG 679

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
            +                   QK+IDQ+ S N   D P+         K L      A+ 
Sbjct: 680 YL-------------RLVGIMQKFIDQSISANTNYD-PTKFEGGKVPMKVLIQDLLTAYK 725

Query: 895 MGLKTTYYLRSRSATSVEKSTLKG 918
            G+KT YY  +R      +  L  
Sbjct: 726 FGVKTLYYHNTRDGADDAQGDLDD 749


>gi|78484808|ref|YP_390733.1| ribonucleotide-diphosphate reductase subunit alpha [Thiomicrospira
           crunogena XCL-2]
 gi|78363094|gb|ABB41059.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 760

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 186/798 (23%), Positives = 321/798 (40%), Gaps = 86/798 (10%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +   +G     + +++  ++  A  GL++VS   V   ++   YDG+  SD+   +
Sbjct: 4   ETMNVAKRNGETEPLDLEKIHRVITWAAEGLENVSVSEVELRSHIQFYDGMKTSDIHETI 63

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI +  P+Y  + AR  +  LR++                      E+  + + 
Sbjct: 64  IKSAADLISESAPDYQHLAARLAIFHLRKKAFDRFTPPT-----------LFEHVNKMVR 112

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQA 319
             +    + +     +   L N ++++RD  F Y  ++ L  +Y +   + G   E PQ 
Sbjct: 113 NRLYDPQIQDDYTKAEFDELDNYIQHDRDMNFSYAAVKQLEGKYLVQNRVTGKIYESPQF 172

Query: 320 FFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +M + M L        +           FY+  S+F     TP +    T   Q SSC 
Sbjct: 173 IYMLIPMSLFAHYPNDAEPGKTRLDYVKRFYDAASNFKLSLPTPIMSGVRTPTRQFSSCV 232

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L    D L  I               G+G +   +R LG+ I G      G+IPF+K   
Sbjct: 233 LIECGDSLDSINATSSSIVKYVSQRAGIGVNVGQIRALGSEIRGGEAYHTGMIPFIKHFQ 292

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               + +QGG R GA   +   WH++VE  + L+ N G +  R   ++    +  L  +R
Sbjct: 293 TAVKSCSQGGVRGGAATLFFPIWHLEVESLIVLKNNRGVEENRARHLDYGVQVNKLMYQR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           + +    TLFSP +V  L+D +    +EFE  Y+ YE      +    + + AV L+ ++
Sbjct: 353 MIEGGNITLFSPSDVPGLYDAFFEDQEEFERLYKIYEADDTIRK----KTMKAVDLFTQV 408

Query: 550 LTMLFETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNS--------SSEETAVC 600
                +TG  +I   D  N   S       +H SNLC EITL +           E A+C
Sbjct: 409 AQERAQTGRIYIQNVDHSNTHSSFDPKKAPIHQSNLCLEITLPTHPLNSVDDPEGEIALC 468

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L + NL A    ++ D           VR LD+++D   + +E A+K++   R +G+G+
Sbjct: 469 TLSAFNLGALEDLDELDELS-----DLIVRALDSLLDYQDYPVEAARKASMGRRTLGVGV 523

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L   H+ Y+   A  +  ++ E I ++ + AS+ L++E G    F+ + + QG+
Sbjct: 524 TNLAYYLAKNHVKYSDGSANNLVHKAFEAIQYYLLKASLNLSKEYGKCDFFEDTKYAQGI 583

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            PID+     +              W+ L+  ++  G+RNS   A+ P  T + I   + 
Sbjct: 584 LPIDTYKKELDEF----CTEPLHYDWETLRSEIQKHGLRNSTMTALMPCETSSQITNSTN 639

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            I+P    + VK++  G    V         +   LW                   +IPD
Sbjct: 640 GIEPPRGYVSVKASKDGILKQVVPGFKEFRDQYELLW-------------------QIPD 680

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQA 892
           +                ++     QK++DQA S N   D    +        +      A
Sbjct: 681 N-------------KGYLQLVGIMQKFVDQAISANTNYDPAKFEDGRVPIKLVLQDLLYA 727

Query: 893 WLMGLKTTYYLRSRSATS 910
           +  GLKT YY  +R    
Sbjct: 728 YKAGLKTLYYHNTRDGAD 745


>gi|148244628|ref|YP_001219322.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326455|dbj|BAF61598.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 758

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 333/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +K+   +G   S + +++  +V  A   L+ VS   V        +DG+   D+  
Sbjct: 1   MNQDIKVTKRNGQQESIDMEKIHRVVHWASQDLKSVSVSQVEINAQLAFFDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  + P+Y  + AR  +  LR++   +    P           + E+  + 
Sbjct: 61  TIIKSAADLISTDIPDYQYLAARLSIFHLRKKAFKSFTPPP-----------FFEHIKKI 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G+  + +    +  ++  L + + + RD  F Y+ ++ L  +Y +   + G   E P
Sbjct: 110 TDLGIYDKDILNKYLKEEIEILGSYIDHWRDMNFSYVAVKQLEGKYLVQNRVTGEIYESP 169

Query: 318 QAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M V M L  +   +++      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QFLYMLVGMCLFQEYEVSKRMNTVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             DDL  I               G+G +   +R +G+ I G      G IPF K  +   
Sbjct: 230 TDDDLDSISATAGVIVKYISQRAGIGINGGKIRAIGSPIRGGEATHTGCIPFYKHFHTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R  +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVENLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +  DL++ +    +EF+  Y  YE+     +      I A  L+ K +  
Sbjct: 350 DGDITLFSPHDTPDLYNAFFADQEEFKRLYHKYEQNTLIRKH----TIKARELFSKFIQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  ++   D CN  S        +  SNLC EITL +           E A+C L 
Sbjct: 406 RANTGRIYLQNVDHCNTHSAFNAKQAPIKQSNLCMEITLPTKPLYSIQDEQGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A  + N+     L +     VR LD ++D   + I+ A+ ++   R +G+G+   
Sbjct: 466 AVNLGALDSLNE-----LETLTDIIVRSLDCLLDYQDYPIKAAELASKNRRTLGIGVTNL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+     ++   + E + ++++ AS  LA+E GA   F  + + QG+ PI
Sbjct: 521 AYYLAKNGAKYSDGSGNQLIHTTFEALQYYSLKASNTLAKELGACPLFFQTQYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +   +  +    +  WD L++ + + G+RNS   A+ P  + + I   +  I+
Sbjct: 581 DSYKKDIDAFCDFKL----KFDWDTLRQDITSKGLRNSTLTALMPCESSSQISNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G    +         +       ++ D+K ++G +            
Sbjct: 637 PPRGFVSIKQSKDGILKQIVPDY-----ELLKNQYELLWDIKDNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQ+ S N + D PS         K       +A+  
Sbjct: 681 ---------------LCGIMQKFVDQSISTNTHYD-PSQFEGNKVPIKLFLMDLLKAYKY 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R   S + S  +  + 
Sbjct: 725 GIKTLYYHTTRDGGSNDMSEKEDDNN 750


>gi|326792203|ref|YP_004310024.1| ribonucleoside-diphosphate reductase, subunit alpha [Clostridium
           lentocellum DSM 5427]
 gi|326542967|gb|ADZ84826.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           lentocellum DSM 5427]
          Length = 763

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/816 (30%), Positives = 394/816 (48%), Gaps = 101/816 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++I   DG L    + + + +VE AC  L       +  +      D ++  +++  LI
Sbjct: 2   TIEIRKRDGRLEPLCASKTKKMVEFACRNLAGCDPIELELDAKIQFRDKMTTREIQKVLI 61

Query: 204 FSSRTLIEKEP-------------NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   + +               N+  V AR L+  L +E          +   H    
Sbjct: 62  QTAIEKVIQTNEDAYGNQVKQTYINWQYVAARLLVYDLYKEAA------ISRGYTHFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI- 309
            Y   +   I  G+    L  +  D ++  LA  +  ERD  F Y G+++L DRY +   
Sbjct: 116 DYKALYEELIHRGLYGDYLKMNYTDTEVEELAAYINPERDDLFNYEGIKLLADRYLVKGY 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
            G  +E+PQ  FM +AM LA+ E EK    A +FY+LLS      +TPTL N+GT   QL
Sbjct: 176 KGEVMELPQERFMTIAMHLAIPEGEKRVYYAKQFYDLLSQLKMTVATPTLANAGTAFYQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++TV D+L+ I+   Q+ A ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYLGKVRALNSEIRGHKRSSGGVIPWV 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q G+RKG+    L+ WH D+ +FL+L+ N GDDRR+ HD+  +  IPDL
Sbjct: 296 RLYNDTAVAVDQLGRRKGSASVTLDVWHSDLYDFLELKTNNGDDRRKAHDIFPSISIPDL 355

Query: 489 FMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           FM+R+ +   W+LF P  V       L D +  E + A+       +  E      I  +
Sbjct: 356 FMERLLKRENWSLFDPYMVHKEMGFYLEDYFDDEEDKAFTTRYLACEANEKLERITIPTL 415

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596
            + +K++    ETG P+I F+D  N  +P +H+G++++SNLC EI  N S+ E       
Sbjct: 416 DIMKKIMISAVETGTPFIFFRDTVNRANPNKHLGMIYASNLCHEIAQNMSASELIAEGTK 475

Query: 597 ----------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
                              CNL S NL       + + ++    I   +R+LDNVI +N 
Sbjct: 476 EVNGEMEVYSRIKPGDMVTCNLNSTNL------GRVEREEFKDIIPLQIRMLDNVITLNQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +++A+ ++  +RAIGLG  G+   L   HI + S E +++ADE  E +++ AI  S+E
Sbjct: 530 LPVKEAQLTSDRYRAIGLGTSGYHHYLVNHHISWESEEHLKVADELFEDMAYEAIRGSME 589

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GAY  F+GS W  GV+                    +   W +LK+ V   G+RN
Sbjct: 590 LAKEKGAYPGFEGSEWQTGVY--------------FERRGYTSPRWQKLKEEVAKYGLRN 635

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              MA+APT + +NI   +  IDP ++  +++                +L   + W    
Sbjct: 636 GYIMAVAPTGSTSNIANTTAGIDPIFKKFFIEEKKG----SFTPKAAPDLCAENFW---- 687

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
                                  ++  A  I+  W I++   RQ+ IDQAQS NLY   E
Sbjct: 688 -----------------------LYKEAHHINQSWSIKACGIRQRHIDQAQSFNLYVTPE 724

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              K +  +Y  AW  G+KT YY+R++S  + E ++
Sbjct: 725 VKAKDILQMYIDAWQEGVKTLYYVRNQSLETDECTS 760


>gi|326796345|ref|YP_004314165.1| ribonucleoside-diphosphate reductase, subunit alpha [Marinomonas
           mediterranea MMB-1]
 gi|326547109|gb|ADZ92329.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           mediterranea MMB-1]
          Length = 754

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 183/803 (22%), Positives = 318/803 (39%), Gaps = 79/803 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G   + + +++  ++  A  GL++VS   V  +     ++G+  +D+   
Sbjct: 1   MSTLTVTKRNGVTENIDLEKIHKVITWAAEGLENVSVSQVELKAQIQFFEGIRTTDIHET 60

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI S+  LI E  P+Y  + AR  +  LR++               E   LY E+ C  +
Sbjct: 61  LIKSAADLISENTPDYQYLAARLAIFHLRKKAFGQF----------EPPRLY-EHVCNLV 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQ 318
           E+      +       +L  +   + + RD  F Y  ++ L  +Y +   + G   E PQ
Sbjct: 110 EQNRYDAHILNDYSKEELDQINEFIDHSRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQ 169

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ VA  L     ++ +      FY+ +S F     TP +    T   Q SSC L   
Sbjct: 170 FIYILVAACLFANYEKETRLDLIKRFYDAVSQFKLSLPTPIMSGIRTPTRQFSSCVLIEC 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 230 GDSLDSINATSSAVVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVK 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ + 
Sbjct: 290 SCSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKG 349

Query: 497 AGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +  +   F+  Y  YE+     +      + A  L+    +  
Sbjct: 350 GNITLFSPSDVPGLYDAFFADQEKFDRLYTMYEQDDSIRKS----TVKASELFTLFASER 405

Query: 554 FETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLGS 604
             TG  ++   D CN  SP    V  V  SNLC EI L +           E A+C L +
Sbjct: 406 ASTGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLENVSDPDGEIALCTLSA 465

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL A    ++             +R LD ++D   + I  A+ +    R +G+G++ + 
Sbjct: 466 FNLGALENLDEL-----EELSELIIRALDALLDYQNYPIPAAQNATELRRTLGVGVINYA 520

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A E+  ++ E I +  + AS +L++E G   +F  + + +G+ PID
Sbjct: 521 YYLAKNGVRYSDGSANELTHKTFEAIQYFLLKASNKLSKEFGPCKAFNETTYSKGILPID 580

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +            ++      W+ L+K +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 581 TYKEEVNK----IVSSELYYDWESLRKDIVEYGLRNSTLSALMPSETSSQISNATNGIEP 636

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VK++  G    V         +R      ++  +  +DG +             
Sbjct: 637 PRGFVSVKASKDGILKQVVPEY-----ERLKDQYELLWSIPSNDGYLQ------------ 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGL 897
                              QK++DQ+ S N   D           K +      A+ +G+
Sbjct: 680 --------------LVGIMQKFVDQSISANTNYDPQKFESQKVPMKVILKDLLTAYKLGV 725

Query: 898 KTTYYLRSRSATSVEKSTLKGVD 920
           KT YY  +R     ++  +    
Sbjct: 726 KTLYYHNTRDGAEDKQDDMDDCA 748


>gi|188996382|ref|YP_001930633.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931449|gb|ACD66079.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 850

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 280/806 (34%), Positives = 424/806 (52%), Gaps = 65/806 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK----NMYDGLSESDLETAL 202
           ++  DGT   F  K+L   +     GL       ++ +  K     + + ++  +L+  +
Sbjct: 9   VVKRDGTQEKFQMKKLVDAIFALLEGLDLPDDYEIVFKITKELDLKIPEVVTTEELDYLV 68

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI     Y  +  R LL+ + R +                       F  YI  
Sbjct: 69  LKAIEHLIPTGSIYDTIATRQLLKIINRRIERRFSS-----------------FKDYINY 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            V  +LL   +++FD+  L + + Y RD   +Y GL  L DRY     N   IE PQ FF
Sbjct: 112 AVNEKLLKPELLNFDIDLLESKIDYSRDNNLDYFGLSTLKDRYLTKDRNFETIEKPQWFF 171

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMG+   E E     ++ Y+ LS+  ++ STPTLFNSGT   Q SSC++  V D L 
Sbjct: 172 MRVAMGIGNTEEE----ILKIYDKLSNLEYLHSTPTLFNSGTLTNQYSSCYVNVVDDSLE 227

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+K+ +    A+ QG
Sbjct: 228 SIMDKAKETAFLAKYAGGVGTDITRIRATGSKIHSLNAKSSGIIPFIKIFDTIVNAIQQG 287

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 288 GRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEIMRRIKEGEPIYL 347

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   YG+EF   Y+    +A+RGE+++++KI +   ++K L  L +TGHPW+
Sbjct: 348 FDPAECRELVTSYGEEFAKKYQECIEKAERGELELWKKIDSRDFYKKYLFKLAKTGHPWL 407

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613
           TFKD  N  +P     V++SSNLCTEI++ +S + TAVC L S+NL  H           
Sbjct: 408 TFKDAHNRHNPCPKYSVINSSNLCTEISIPNSPQSTAVCTLASVNLARHLKKVERETSDV 467

Query: 614 ---------------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                                +  D+DKL  T+ T V  LDN++D N +  E+++K+   
Sbjct: 468 KREELSPNEKNTSHLLTYSPTHSIDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMD 527

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS-SF 711
            R IG+GLMGF  AL  L IPY S EA+E+A E  +F+       S ELA+ERGA+   +
Sbjct: 528 LRPIGIGLMGFHEALIYLGIPYDSDEAIELAKEIAKFMRETVYRKSEELAKERGAFPHYY 587

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S  +      + +    +    L     +  P++           RN+  +AIAPTA+
Sbjct: 588 EVSKRESEKVKSEELNPNEKTPTHLLTYSPTH-PYNY-------PPRRNAVLLAIAPTAS 639

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I G S SID  + N++ +  +SG F VVN  L+  L+++ +W+E M+  +K + GSI
Sbjct: 640 ISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEMLEKIKANQGSI 699

Query: 832 GNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
             I+ +   + K++  TA+E+ P   I+ A+  Q++IDQA S +LY++E     ++ IY 
Sbjct: 700 QYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDMENIYM 759

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTL 916
            AW  GLK+TYY         EK T+
Sbjct: 760 YAWEKGLKSTYYCFIDKTIKGEKYTM 785


>gi|87120531|ref|ZP_01076425.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
 gi|86164174|gb|EAQ65445.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
          Length = 755

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 189/792 (23%), Positives = 317/792 (40%), Gaps = 79/792 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G   S N +++  +V  A  GL +VS   V  +     ++G+  +D+   
Sbjct: 1   MTTLTVTKRNGETESINLEKIHKVVTWAAEGLDNVSVSQVELKAQIQFFEGIKTTDIHET 60

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI S+  LI ++ P+Y  + AR  +  LR++     ++ P    H              +
Sbjct: 61  LIKSAADLISEDTPDYQYMAARLAIFHLRKKAFGE-FEPPHLLAH----------VQNLV 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQ 318
           E+      +  +  + +   L   L + RD  F Y  ++ L  +Y +   + G   E PQ
Sbjct: 110 EQKRYDAEILSAYSEAEFDQLNGFLDHSRDMNFSYAAVKQLEGKYLVQNRVTGDIYESPQ 169

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L   
Sbjct: 170 FIYLLVAACLFANYDASVRLDYIRRFYDAVSNFKISLPTPIMAGIRTPTRQFSSCVLIEC 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I G      G IPF K       
Sbjct: 230 GDSLDSINATSSAIVKYVSQRAGIGINAGAIRALGSAIRGGEAFHTGCIPFYKHFQTAVK 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+   
Sbjct: 290 SCSQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLISG 349

Query: 497 AGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L+D +    +EFE  Y  YE      +    + I A  L+    +  
Sbjct: 350 GNITLFSPSDVPGLYDAFFADQEEFERLYVQYEAD----DSVRKQTIKASELFTLFASER 405

Query: 554 FETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGS 604
             TG  ++   D CN  SP    V  V  SNLC EI         +     E A+C L +
Sbjct: 406 ASTGRIYLQNVDHCNTHSPFDPAVAPVKQSNLCLEIALPTKPLQHIYDEKGEIALCTLSA 465

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NL +  + ++             VR LD+++D   + +  A+ +    R +G+G++ + 
Sbjct: 466 FNLGSLESLDEL-----EELSDLIVRALDSLLDYQNYPVPAAQSATDLRRTLGVGVINYA 520

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y+   A E+  ++ E I ++ + AS  L++ERGA  +F  + + +G+ PID
Sbjct: 521 YYLAKNGVRYSDGSANELTHKTFEAIQYNLLKASNNLSKERGACQAFDETTYAKGILPID 580

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           S         +   +      W+ L+K +   G+RNS   A+ P+ T + I   +  I+P
Sbjct: 581 SYKKEI----DKVCSPELYYDWETLRKDIVEHGLRNSTLTALMPSETSSQIHNATNGIEP 636

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + VK++  G    V         +R   +  ++  +  +DG +             
Sbjct: 637 PRGFVSVKASKDGILKQVVPEF-----ERLKDEYELLWSIPSNDGYLQ------------ 679

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGL 897
                              QK++DQA S N   D           K L      A+ +G+
Sbjct: 680 --------------LVGIMQKFVDQAISANTNYDPAKFESSKVPMKLLLKDLLTAYKLGI 725

Query: 898 KTTYYLRSRSAT 909
           KT YY  +R   
Sbjct: 726 KTLYYHNTRDGA 737


>gi|168186577|ref|ZP_02621212.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295443|gb|EDS77576.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
          Length = 764

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/817 (29%), Positives = 392/817 (47%), Gaps = 102/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   +G     + ++ + +V  AC GL+      +  ++     D +S  +++  LI
Sbjct: 2   DIKVKKRNGEYEKLHVEKTKKMVSLACEGLEGCDPLELEIDSRIQFRDCMSTKEIQKILI 61

Query: 204 FSSRTLI--------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            ++   +              +   N+  V AR L   L +E       K  +  ++   
Sbjct: 62  QTAIEKVIYIDKNNHDNISSKKTNINWQYVAARLLAFDLYKEA------KINRDYNYFGY 115

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
             +     R +  G+  + L E+  D ++  L++ ++ +RD  F Y GL++L DRY +  
Sbjct: 116 GDFLYLVKRLVNIGLYGKYLIENYSDEEIKELSDYIEPKRDELFNYEGLKLLNDRYLIKG 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            NG  +E+PQ  FM +AM LA+ E + +   A +FY+L+S      +TPTL N+GT   Q
Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNKIYYAKKFYDLISKLKMTVATPTLGNAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ + ++K+ G LG     VR L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSQVSKHGGALGIYIGKVRALNSEIRGHKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  IPD
Sbjct: 296 IKLYNDTAVAVDQLGKRKGGAAITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355

Query: 488 LFMKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           +FM R+     W+LF P  V       L D +  E    +     + +  +      +S 
Sbjct: 356 IFMTRLLNRESWSLFDPYMVHKLMGYKLEDYFDDEDNKEFTKRYLECEANKNLQRDTVSC 415

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
           + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S         
Sbjct: 416 LDIMKKIMKSAVETGTPFIFFRDTVNRANPNKHRGMIYSSNLCHEIAQNMSESELISEES 475

Query: 594 --------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                         S +   CNL SINL           ++L   I   +R+LDNVI +N
Sbjct: 476 TYKNGFNEVVSRVRSGDMVTCNLNSINLSKVSR------EELKEAIPLQIRMLDNVISLN 529

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ +I AS+
Sbjct: 530 KLPVKESSITSDKYRAIGLGTSGYHQYLAKNRIKWESEEHIKEVDALFEDIAYESIKASM 589

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY  F+GS W  G +                    +   W +L+  V   G+R
Sbjct: 590 ELAKEKGAYPEFEGSEWQSGKY--------------FERRGYNSERWSKLRDDVAKYGIR 635

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++                +L   + W   
Sbjct: 636 NGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEEKKG----SFTPKTAPDLNNDNFW--- 688

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                    +  A  I+  W I++ + RQK IDQ+QS NLY   
Sbjct: 689 ------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNLYITP 724

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +   K +  +Y ++W  G+KT YY+R++S    E S+
Sbjct: 725 DIKAKDILDMYTESWRQGIKTIYYIRNKSIEMNECSS 761


>gi|94499219|ref|ZP_01305757.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
 gi|94428851|gb|EAT13823.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
          Length = 756

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 197/803 (24%), Positives = 328/803 (40%), Gaps = 81/803 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++  L +   DG     +  ++  ++  A  GL++VS   V         DG+S SD+  
Sbjct: 1   MSSTLHVTKRDGNRAPLDLDKIHKVLTWAAEGLENVSVSEVELRAQIQFSDGISTSDIHE 60

Query: 201 ALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI E  P+Y  + AR  +  LR++               E   LY E+  + 
Sbjct: 61  TLIKSAADLISENTPDYQYMAARLNIFHLRKKAYGQF----------EPPALY-EHVAKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++     R L E     +   +   +++ RD  F Y  ++ L  +Y     + G   E P
Sbjct: 110 VDMDRYDRHLLEDYTKEEFDEMEGFIEHGRDLNFAYAAVKQLEGKYLAQNRVTGEVFESP 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ +   L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYVLIGACLFANYEKSNRMDYVRRFYDAVSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I  A            G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 TDDSLDSINAAAGSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYERLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D + ++   FE  Y  YE+     +    + I A+ L+  +L  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFEDQAKFEELYVKYEQDDSIRK----QTIKAMELFSILLQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  S        +  SNLC EI         +N    E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPEHAPIRQSNLCLEIALPTKPLKDINDKDGEIALCTLA 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A    ++             VR LDN++    + +  A+ ++ + R +G+G++ +
Sbjct: 466 AFNLGALENLDEL-----EELSDIIVRALDNLLSYQDYPMAAAEIASESRRTLGVGVINY 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS +LA+E GA + F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHQTFEAIQYYLLKASNQLAKEVGACAKFNETTYSQGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +   E  +    R  W+ L+  +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDLDKVCEEEL----RYDWEALRGEIKTHGLRNSTLTALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         Q+   +  ++ +   +DG +            
Sbjct: 637 PPRGYISIKASKDGILKQVVPEY-----QKLKNNYELLWNWPSNDGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQA S N   D PS         K L       + +
Sbjct: 681 ---------------LVGIMQKFVDQAISANTNYD-PSRFEGGKVPMKLLMKDLLTTYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKG 918
           GLKT YY  +R   S  +  +  
Sbjct: 725 GLKTLYYHNTRDGASDAQDDMAD 747


>gi|225850412|ref|YP_002730646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
 gi|225646207|gb|ACO04393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
          Length = 847

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/950 (23%), Positives = 401/950 (42%), Gaps = 155/950 (16%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+P KI+ AI KA  AV  K  S +       + ++++ V  L +  K 
Sbjct: 4   KIRKRDGRIVPFNPEKITNAIWKAMQAVGEKDFSTA-------EKISKEVVRELERTLKP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E IQD VE  L+++G  ++ + Y+LYR++R+++R  +            L    
Sbjct: 57  GEIPDVEQIQDIVERKLIEAGLARVAKAYILYRQKRAEIRKEKQQI---------LNKKE 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR-T 208
            D     F+   L ++   A   L    +  ++ E+ K ++  +         + ++  +
Sbjct: 108 IDEVDKRFDINALRVL---AARYLNKDRAGKII-ESPKQLFQRV--------AVNTALPS 155

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG---VK 265
           L+  E  Y+K           +E+     +      +     +      RY  EG   V 
Sbjct: 156 LLYDERVYSK-----------KELKKQPVEDFDPERYEGKLKIGDYTLNRYHLEGLKRVY 204

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            RL +E  M      L   +                             E          
Sbjct: 205 DRLNNERRMKIPFSKLLKMI------------------------EKGDFESY-------- 232

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                      +   ++Y+++    FM +TP L N G       +CF+  + D +  I  
Sbjct: 233 ----------GREIDQYYSIMVEKKFMPNTPVLVNFGNPLGMGMACFVLDMEDSIESIME 282

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            L+  A++ K  GG G +++ +R  G  I  T+GKS G I F+ + +     + QGG R+
Sbjct: 283 TLKRAALIFKAGGGCGYNFSKLRPKGDFISTTHGKSSGPIAFMTLYDKMTDVIKQGGVRR 342

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA    L + H D+EEF+  +K       +  + N + ++ + F     +N  + L +P 
Sbjct: 343 GANMGILNSDHPDIEEFIVAKKGN----VQLTNFNISVFLKEDFWDYYRENKPYPLINPR 398

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +                             V++ ++   L+  ++   +E+  P + F D
Sbjct: 399 DGK---------------------------VWKYVNPRNLFDTIVYEGWESAEPGLLFDD 431

Query: 566 PCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QF 616
             N  +P  +  G + ++N C E+ L  +      C+LGSINL A             + 
Sbjct: 432 NINRYNPFLETFGRIQATNPCGEVLLYPNES----CDLGSINLWAFIKEYYDGNGRKVEV 487

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D L  T+R A R LDNV+DIN +  ++ +K    +R IGLG+MG    L  L IPY S
Sbjct: 488 DWDGLEKTVRIATRFLDNVLDINKYPFKEIEKETLKNRKIGLGIMGLADFLFELEIPYNS 547

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +     +  MEF+++++   S++LA+ERG + S+  S + +G  PI             
Sbjct: 548 EDGRRWMERVMEFVNYYSKEESIQLAKERGKFPSYNKSFYRKGKLPIRG----------F 597

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +  L WD+L  ++K  G+RN+    IAPT +I+ I G +  I+P +  +Y K    
Sbjct: 598 EEKESWNLDWDKLIDKIKKHGLRNAFTTVIAPTGSISMIAGTTSGIEPIFALVYEKKVTV 657

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G F  V+      +++  ++D+ +I D+  ++GSI +I+ IP+  KK+  TA +I     
Sbjct: 658 GTFYYVDPVFEKTMEREGIFDDTLIKDVSKNEGSIQDIKYIPEKWKKVFVTAMDISAEDH 717

Query: 857 IESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +++ +  QKW D + S  +   E  + + +   Y  A  +G K     R +S   V    
Sbjct: 718 VKALASVQKWTDSSVSKTINFPEDATVEDMKRAYLLAHYLGCKGLTVYRYKSIKGVY--- 774

Query: 916 LKGVDGKLNA--VPVTDPNSSTHSLGIPSSCTSDTE----------CEVC 953
           + G + K  A   P+ D  +   S+   S    + E          C VC
Sbjct: 775 VAGEEKKEEAKLTPIRDVKAKGVSIYKESVVHEEAEIERGTKGKDICPVC 824


>gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis]
          Length = 520

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 212/535 (39%), Positives = 323/535 (60%), Gaps = 18/535 (3%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGL 400
            YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D + GI+  L++ A+++K +GG+
Sbjct: 1   TYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGI 60

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDV 459
           G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV
Sbjct: 61  GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDV 120

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E   L +++G +FE
Sbjct: 121 FDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFE 180

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             YE YER+         + + A  +W  ++    ETG P++ +KD CN +S QQ++G +
Sbjct: 181 ELYEKYEREGRAR-----KVVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTI 235

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDI 638
             SNLCTEI   +S +E AVCNL S+ L  +  + + FD+ KLA   +  V+ L+ +I+I
Sbjct: 236 KCSNLCTEIVEYTSEKEVAVCNLASLALNMYVTSERSFDFKKLADVTKVIVKNLNKIIEI 295

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A  +  +  E I + A+ +S
Sbjct: 296 NFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESS 355

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA+E G Y +++G    +G+   D   +            T    W  LK+++   G+
Sbjct: 356 CELAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGI 405

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L ++ LW+E
Sbjct: 406 RNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNE 465

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            M + +  ++GSI N+  IP +LK+++ T +EI    +I  A+ R  +IDQ+QSL
Sbjct: 466 EMKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520


>gi|15616798|ref|NP_240010.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681553|ref|YP_002467938.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471236|ref|ZP_05635235.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134536|sp|P57276|RIR1_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|25285846|pir||H84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) [imported] -
           Buchnera sp. (strain APS)
 gi|10038861|dbj|BAB12896.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621842|gb|ACL29998.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624396|gb|ACL30551.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085921|gb|ADP66003.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086492|gb|ADP66573.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087075|gb|ADP67155.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 761

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 191/794 (24%), Positives = 332/794 (41%), Gaps = 81/794 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  ++  A  GL DVS   V   +    Y+ ++  ++   +I 
Sbjct: 5   LFVTKRDGRKEKINLDKIHKVLNWASEGLDDVSVSQVELCSRIQFYNNITTINIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + ++  
Sbjct: 65  AAADLISQDTPDYQYMAARLAIFHLRKKAYGQF----------EPPKLY-DHVKKMVDLE 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L ++    + + + + + + RD  F Y  ++ L  +Y +   +NG   E  Q  +
Sbjct: 114 KYDENLLKNYSYKEFLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + ++  L  +  +  +      FYN +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILISACLFSQYPKNVRMNYIHRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I        G IPF K       + +
Sbjct: 234 LNSINATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+      
Sbjct: 294 QGGVRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQI 353

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V DL+  +  +   F+  Y  YE+     +    + I A+ L+  M+     T
Sbjct: 354 TLFSPSDVPDLYKAFFSDQKKFKKIYLQYEK----NKNIRKKTIKALDLFSLMMQERTST 409

Query: 557 GHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNS--------SSEETAVCNLGSINL 607
           G  ++   D CN+ S     +  +  SNLC EITL +        +  E A+C L + NL
Sbjct: 410 GRIYVQNVDHCNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               +      D        +VR LD ++D   + +  AKKS  + R++G+G++ F   L
Sbjct: 470 GKIKS-----LDDFKELSILSVRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E + ++ + AS ELA+E+GA S F  + +  G  PID+  
Sbjct: 525 AKNKVRYSDGSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L+ ++K  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 KYIDD----ICNEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + +K +  G    V        L+   LW      D+  + G +               
Sbjct: 641 FISIKVSKDGILRQVVPEYKKLRLQYELLW------DIPNNTGYLQ-------------- 680

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
                        A   QK+IDQ+ S+N + D           K+L +    ++ +GLKT
Sbjct: 681 ------------LAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKT 728

Query: 900 TYYLRSRSATSVEK 913
            YY  +R  +  ++
Sbjct: 729 LYYQNTRDGSEDDQ 742


>gi|269469190|gb|EEZ80729.1| ribonucleotide reductase, alpha subunit [uncultured SUP05 cluster
           bacterium]
          Length = 758

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 196/812 (24%), Positives = 336/812 (41%), Gaps = 83/812 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +++   +G     + +++  +V  A   L+ VS   V        +DG+   ++  
Sbjct: 1   MNENIQVTKRNGKKEPVDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEEIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  ++AR  +  LR++   +    P             E+  ++
Sbjct: 61  TIIKSAADLISTETPDYQYLSARLAIFHLRKKAFKSFTPPP-----------LFEHIKKF 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            + G+  + + +     ++  L   + + RD  F Y  ++ L  +Y +   + G   E P
Sbjct: 110 TDLGIYDKDILDKYSKKEIKELDKYIDHWRDMKFSYAAVKQLEGKYLVQNRVTGEIYESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V M L  +   K +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QLLYVLVGMCLFQEYEAKARMDIVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             DDL  I  A            G+G +   +R +G+ I G      G IPF K  +   
Sbjct: 230 ADDDLDSISAAAGAIVKYVSQRAGIGINGGRIRAIGSPIRGGEATHTGCIPFYKHFHTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++V+E L L+ NTG D  R   ++       L  +R  +
Sbjct: 290 KSCSQGGVRGGAATLFYPFWHLEVKELLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLE 349

Query: 496 NAGWTLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +VS L+D + +   EF+  YE YE+     +      I A  L+ K +  
Sbjct: 350 DGDITLFSPHDVSGLYDSFFEDQKEFKRLYEQYEQDDSIRK----ETIKARELFAKFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  ++   D CN           V  SNLC EITL +           E A+C L 
Sbjct: 406 RANTGRIYLQNVDHCNTHGAFDAKQAPVRQSNLCMEITLPTKPLYSVQDENGEVALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A  +      D+L       VR LD+++D   + I+ A+ ++   R +G+G+   
Sbjct: 466 AVNLGALDS-----LDELEDITEIIVRALDSLLDYQDYPIKAAELASMNRRTLGIGVTNL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   +  Y+      +  ++ E + ++A+ AS +LA E G+   F  + + +G+ P+
Sbjct: 521 AYYLAKNNAKYSDGSGNPLIHKTFEALQYYALKASNKLANELGSCPLFNETQYSKGIMPV 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +       N    L WD L+K +   G+RNS   A+ P  + + I   +  I+
Sbjct: 581 DSYKKDVDDF----CNCDLELDWDALRKNIVATGLRNSTLTALMPCESSSQISNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +K +  G    +   +   + K   LW      D+K +DG +           
Sbjct: 637 PPRGFVSIKQSKDGILKQIVPEYEALKNKYELLW------DIKNNDGYLQ---------- 680

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWL 894
                             +  QK++DQ+ S N + D PS         K       +A+ 
Sbjct: 681 ----------------LCAIMQKFVDQSISTNTHYD-PSQFEGNKVPMKLFLMDLLKAYK 723

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            G+KT YY  +R     +    +  DG  + V
Sbjct: 724 YGIKTLYYHTTRDGGGEDMLEKEDNDGCADGV 755


>gi|225847949|ref|YP_002728112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643612|gb|ACN98662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 846

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/943 (24%), Positives = 396/943 (41%), Gaps = 142/943 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD SKI+ AI KA  AV  K  S S       ++L ++ V +L     S
Sbjct: 4   KIIKRDGRVVDFDISKIANAIWKAMQAVGEKDKSLS-------ESLAKKVVEKLESKLSS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E +QD VE +L+++G  K+ + Y+LYRE+R+ +R  +            L    
Sbjct: 57  NQIPTVEQVQDIVEETLIEAGLSKVAKAYILYREKRAQIRKEKMQI---------LNKDY 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            D    +F+   L ++V      L    S  V+ E+ K ++  ++      +L++  R  
Sbjct: 108 IDEVDKAFDINALRVLVSR---YLNKDESGRVV-ESPKQLFQRVAIHVTLPSLLYDERVF 163

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            +K               L++E    +     KA    +   +   +     E +  R+ 
Sbjct: 164 SKK-------------SSLQKESKIKIQDYLGKAR---IGKYFLNIYHLEALERLHKRMN 207

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E +M  D   + N                               E              
Sbjct: 208 KEKLMKKDFSEILNM---------------------LTKDEFKDYE-------------- 232

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
                  K   E+YNL+ S  FM +TP L N G       +CF+  + D L  I   L+ 
Sbjct: 233 -------KEVDEYYNLMVSRKFMPNTPALVNFGNPLGMGMACFVLGMEDSLLSIMETLKN 285

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A++ +  GG G +++ +R  G  +  T+G S G I F+ + +     + QGG R+GA  
Sbjct: 286 AAIIFQSGGGCGYNFSTLRPEGDFVRSTHGVSSGPIAFMTLFDKMTDVIKQGGVRRGANM 345

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             L + H D+E+F+  +K       +  + N + ++ + F +   +N  + L +P     
Sbjct: 346 GILNSDHPDIEKFVVAKKGN----LQLTNFNISVFLKEDFWEYYKENKPYPLINP----- 396

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                    ++ + I+    +  ++   +E+  P + F D  N 
Sbjct: 397 ----------------------RNKQIVKYINPKNFFDLIVYQGWESAEPGLLFDDNINR 434

Query: 570 RSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDK 620
            +P  + +G + S+N C E+ L  +      C+LGSINL A             + +++ 
Sbjct: 435 YNPFLKALGKIESTNPCGEVLLYPNES----CDLGSINLWAFVEEEYDGEKRVVKINWED 490

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+R AVR LDN++DIN + ++K ++     R IGLG+MG    L  L +PY S E +
Sbjct: 491 LEKTVRLAVRFLDNILDINKYPLKKIEERTLKTRKIGLGVMGLADTLFELELPYDSKEGL 550

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           +  +  MEFI++++   S+E+A++RG++  F  S +  G  P                  
Sbjct: 551 DFMERIMEFINYYSKLESIEIAKKRGSFPYFNKSFYKNGNLPFRG----------FYEKE 600

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+++ + +K  G+RN+    IAPT +I+ I G S  I+P Y  +Y K    G F 
Sbjct: 601 SWHFDWEKVSQDIKNHGLRNAYTTVIAPTGSISMIAGCSAGIEPVYSLVYEKKVTIGSFY 660

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            VN      +++  L+D+ +I D+  ++GSI NI  IP   K +  TA +I     +++ 
Sbjct: 661 YVNPVFEKFMEREGLFDDNLIKDVVRNNGSIKNIPYIPQRYKNVFKTAKDISGKDHVKAL 720

Query: 861 SRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV-----EKS 914
           +  QKW+D + S  +   E  S +++   Y  A  +G K     R +S   V     E+ 
Sbjct: 721 ASIQKWVDSSVSKTINFPEDVSIEEMKETYLLAHELGCKGLTVYREKSIAGVYTVPQEQK 780

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECEVC 953
             + V   L    V  P           +         +C  C
Sbjct: 781 EERKVMTSLKDEKVKGPTIYKEITPSFYTQEDYITASEKCPQC 823


>gi|119944869|ref|YP_942549.1| ribonucleotide-diphosphate reductase subunit alpha [Psychromonas
           ingrahamii 37]
 gi|119863473|gb|ABM02950.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychromonas ingrahamii 37]
          Length = 757

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 198/802 (24%), Positives = 322/802 (40%), Gaps = 83/802 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  ++  A  GL++VS   V   ++   YDG+   D+   +I 
Sbjct: 5   LFVTKRNGKRERIDLDKIHRVITWAAEGLKNVSVSQVELNSHIQFYDGIRTDDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +  P+Y  + A   +  LR++                      E+  +   +G
Sbjct: 65  AAADLISETSPDYQYLAAHLAVFHLRKKAYRRF-----------TPPSIFEHVSKMCSKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E     +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDMHLLEDYSKQEFEEMEKFIVHDRDLKFSYAAVKQLEGKYLIQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M VA  L        +      FY+ +S F     TP +    T   Q SSC L    D 
Sbjct: 174 MMVAACLFSNYEPAIRLSYVRRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIETGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  LF +R+      
Sbjct: 294 QGGVRGGAATVFYPVWHLEVESLLVLKNNRGIDSNRIRHLDYGVQLSRLFYQRLIDKKNV 353

Query: 500 TLFSPDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            LFSP +V  L+D + +   EFE  Y  YE   D  +    + ISAV L+  ++     T
Sbjct: 354 ALFSPSDVPGLYDAFFEDQDEFERLYNLYEGDPDIRQ----KSISAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  +  SNLC EI         +     E A+C L + NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLQHIMDEEGEIALCTLSAFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A  + ++            AVR LD+++D   + ++ A+ S+   R +G+G++ F   L
Sbjct: 470 GAIESLDEL-----EELAELAVRALDSLLDYQDYPVKAAENSSMARRTLGIGVINFAYYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  +  ++ E I ++ + AS +LA ERGA   F  + + QG+ P+D+  
Sbjct: 525 AKNGVKYSDGSANNLTHKTFEAIQYYLLKASNKLAFERGACPKFNETRYSQGILPLDTYK 584

Query: 728 L-LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L  + DE        L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 585 KSLDNICDEQY-----HLDWETLRSDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPR 639

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V        +     +  ++ D+  + G                 
Sbjct: 640 GFVSVKASKDGILKQVVPEYEKYKQ-----NYELLWDIPNNQG----------------- 677

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLK 898
                     +E     QK+IDQA S N   D         P    L  +   A+ MG+K
Sbjct: 678 ---------YLELVGIMQKFIDQAISANTNYDPKRFSEGRVPMTNLLKDLLV-AYKMGVK 727

Query: 899 TTYYLRSRSATSVEKSTLKGVD 920
           T YY  +R     E    +  D
Sbjct: 728 TLYYHNTRDGADDENIIDEADD 749


>gi|289805311|ref|ZP_06535940.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 664

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 181/681 (26%), Positives = 294/681 (43%), Gaps = 41/681 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V   L      + +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 350 GGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLG 603
              TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 466 AFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 521 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +  +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNS 804
           P    + +K++  G    V  
Sbjct: 637 PPRGYVSIKASKDGILRQVVP 657


>gi|319790521|ref|YP_004152154.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
 gi|317115023|gb|ADU97513.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
          Length = 764

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 223/795 (28%), Positives = 381/795 (47%), Gaps = 81/795 (10%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             ++ ++   G     + +++  ++  A  GL  V++  + ++   + +DG++   +  A
Sbjct: 1   MTRITVVKRKGDREPLSIEKIRKVINWAAQGLA-VNTLKLEAKLKLHFFDGITTRQIHEA 59

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++ +L   +EP++  +  R  +  L +EV  ++ +   K  +      Y +     +
Sbjct: 60  VINTALSLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYVGGGEEYLKVVKDLV 117

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           ++G+  + L E   + +LV   + +K   DF ++Y G  +L  RY      +  E+PQ  
Sbjct: 118 DKGLYTKELLEKYSEEELVEAGDYIKQSYDFLYDYAGANLLARRYLCIYEDTPFELPQEM 177

Query: 321 FMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           FM +A+ LA+ E ++++ A   +FY+L++      +TP L N    +  LSSCF+T + D
Sbjct: 178 FMTIALMLAINEPKEKRMAFVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I     + A ++K +GG+G + + +R  G+ I    G S GV+P++K+ ND AVAV
Sbjct: 238 NLDSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWVKILNDVAVAV 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ GKR GAV   L+ WH+DV +FL+L+   GD RR+  D+     IPDLFM+RV  N  
Sbjct: 298 NQEGKRAGAVTVALDVWHLDVYDFLELKTENGDLRRKAFDIFPQLVIPDLFMERVKLNQE 357

Query: 499 WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           W L  P EV       L++L+G EFE AY + E  A+  ++++ +++ A  L++++L   
Sbjct: 358 WLLVDPYEVERKFGYRLYELWGDEFEKAYTHVE--AESDKLRLKKRVKARELFKEILKTQ 415

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------- 596
             TG P+I FKD  N  +P +H G + + NLC E   N    +                 
Sbjct: 416 VATGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKGFKTYTDGKRIINEVEE 475

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 CNL S+NL     +     ++L   +R AVR+LDN I++    I +++  N  +
Sbjct: 476 CGLVHTCNLLSVNLANIEND-----EELEEAVRAAVRILDNTIELTSSPIPESELHNRRY 530

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G +G    L    IPY   +++ + DE  E I+++ I  SV LA+ERGA+  F+G
Sbjct: 531 RTIGIGTLGLADYLAKREIPYG-RQSLAVIDELYEKIAYYGIDESVNLAKERGAFPLFEG 589

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W +G+      G L E                    ++KT G+RN    AIAP  +  
Sbjct: 590 SDWSKGIIIGKDAGYLLEKTSLKEKWLKLLS-------KLKTYGIRNGQLFAIAPNTSSG 642

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G +  + P +   Y+  N      +   +L     +   W                 
Sbjct: 643 LLQGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KEKFW----------------- 680

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---R 890
                      +  +  +D   +I+  S  QKW+D   S+ L  +   G +   IY    
Sbjct: 681 ----------FYRESKTMDQKEVIDVISTIQKWVDSGISMELLFNLNLGIRARDIYETFL 730

Query: 891 QAWLMGLKTTYYLRS 905
            AW  G+KT YY+R+
Sbjct: 731 YAWEKGIKTVYYVRT 745


>gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 698

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 281/713 (39%), Positives = 393/713 (55%), Gaps = 91/713 (12%)

Query: 254 EYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-G 311
            + C Y E+G  + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  + G
Sbjct: 5   NHLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKG 64

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             IE+PQ  FM +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC
Sbjct: 65  MPIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSC 124

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           ++ + PD++ GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ 
Sbjct: 125 YIGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKIT 184

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           ND AVAV+Q G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMK
Sbjct: 185 NDIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMK 244

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  N  WTLF P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L 
Sbjct: 245 RVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILL 300

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC----------- 600
             FETG P++ FKD  N  +P  HVG++ SSNLCTEI  N+      +            
Sbjct: 301 NYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHF 360

Query: 601 --------------------NLGSI--------------------NLLAHFANNQFDYDK 620
                                L SI                    NL +   +  +  + 
Sbjct: 361 DEEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKED 420

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +   + TA+R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +
Sbjct: 421 IERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHL 480

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
              DE ME ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       + 
Sbjct: 481 NKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLF 540

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG  
Sbjct: 541 DQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMI 600

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VV   L       D W                            +  A+E+D   L+++
Sbjct: 601 PVVVPNL-----SLDTWQ--------------------------YYTPAYELDQKILVKA 629

Query: 860 ASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           A+ R KWIDQ QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S  S
Sbjct: 630 AAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSESPDS 682


>gi|27904670|ref|NP_777796.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605262|sp|Q89AS4|RIR1_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|27904067|gb|AAO26901.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 761

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 200/799 (25%), Positives = 344/799 (43%), Gaps = 79/799 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G +   N  ++  ++  A  GL+++S   V  ++    Y+ +  + +  
Sbjct: 1   MNQMLFVTKRNGKIELINLDKIHRVLNWAAKGLENISISQVALKSRIQFYNNIKTTIIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +  P+Y  + AR  +  LR++                   LY ++    
Sbjct: 61  TIIKAAADLISENSPDYQYMAARLTIFHLRKKAFGQF----------NPPNLY-DHVKNM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           I+     + L       D + + + +K+ RD  F Y  ++ L  +Y +   +     E  
Sbjct: 110 IKLEKYDQHLLNDYPKQDFLIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESA 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ ++  L  K     + K    FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILISACLFSKYPNETRMKYIKNFYDAISTFKISLPTPIMAGLRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I   +    G IPF K      
Sbjct: 230 SEDNLNSINATTSAIVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH ++E  L L+ N G +  R   M+ +  +  L  +R+  
Sbjct: 290 KSCSQGGVRGGAATIFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLIL 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V +L+D +    ++FE  Y  YE      +    +K+ A  L+  M+  
Sbjct: 350 GEHITLFSPSDVPNLYDSFFNNQEKFERLYIKYENDKTIRK----KKVKASYLFSLMMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D CN  S     +  +  SNLC EITL +         + E ++C L 
Sbjct: 406 RTSTGRIYIQNVDHCNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +INL +   NN  D  KL++ I   VR LD+V+D   + I  AKKS  + R +G+G++ F
Sbjct: 466 AINLGSL--NNLNDLSKLSNLI---VRALDSVLDYQEYPILSAKKSALSRRTLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E I +H ++AS  LAQE+GA   F  + + +G+ PI
Sbjct: 521 AYYLAKNGVRYSDGSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +  DE+  N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYK---KNVDEIC-NEPLHLDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V         +R   +  ++ ++  + G +            
Sbjct: 637 PPRGLISIKASKDGMLRQVVPEY-----KRLKNNYELLWNIPNNTGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
                           AS  QK++DQ+ S N   D    P+ K    +L      A+ +G
Sbjct: 681 ---------------LASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLG 725

Query: 897 LKTTYYLRSRSATSVEKST 915
           LKT YY  +R   S  ++ 
Sbjct: 726 LKTLYYQNTRDGASDHQTE 744


>gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 821

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 203/704 (28%), Positives = 336/704 (47%), Gaps = 53/704 (7%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
            + +   AP + ++  DG        ++   +   C GL +  +   +V  +  + +Y G
Sbjct: 163 EEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSG 222

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T    +   +  + P+YA++ AR  +  L+R    +     ++   +      
Sbjct: 223 VTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFADTVEELHAYVDPKTG 282

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +        G  +  +HE +M  +   +  ++K+ERDF+ ++ G + L   Y L +   
Sbjct: 283 RQA-------GYISDEVHEIVMK-NRDLIDAEVKHERDFSLDFFGFKTLERAYLLKLGDK 334

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ  FMR+A+G+  ++ E    A E Y+L+S   F+ ++PTLF++GT  PQLSSCF
Sbjct: 335 VMERPQYMFMRIAIGIHGEDLEA---AFETYHLMSEKWFIHASPTLFHAGTCQPQLSSCF 391

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T   D + GI+  L+          G G     V      +   + ++      L   
Sbjct: 392 LLTTKEDSIAGIYDTLK---QWHSVGAGAGFVLAVVVSSSVCVGSISVRAN-----LPTF 443

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             +                     H  +       +          D+    WIPDLFM+
Sbjct: 444 LCSPRLKIDP--------VSCPCSHQPMFPLPLCTQPLK------RDLFYGLWIPDLFME 489

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV Q+  W+L  P +   L + +GKEFE  Y  YER+      K  RK+ A  LW  +L 
Sbjct: 490 RVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYEREG-----KYMRKVRAQDLWFAILD 544

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG+P++ +KD CN +S  +H+G + SSNLCTEI   +   E AVCNLGS+ L    
Sbjct: 545 AQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEVAVCNLGSVVLPKFV 604

Query: 612 ANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           + +   FD+ +L    +  VR L+ +ID+N + +E+A+ SN  HR +G+G+ G   A   
Sbjct: 605 SEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRPMGIGVQGLADAFIK 664

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+ S  A  +  +  E + F A++AS ELA++ G Y +F+GS   +G+F  D  G  
Sbjct: 665 MRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSPVSKGIFQFDMWGET 724

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      + R  W  L+ RV   G+RNS  +A  PTA+ A I G ++ I+P   NL
Sbjct: 725 P----------SDRWDWASLRTRVAKHGVRNSLLLAPMPTASTAQILGFNECIEPYTSNL 774

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           Y +   +G+F VVN  L  +L +  LW  ++ + L    GSI +
Sbjct: 775 YARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIAS 818


>gi|160881348|ref|YP_001560316.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
 gi|160430014|gb|ABX43577.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
          Length = 764

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/817 (29%), Positives = 388/817 (47%), Gaps = 102/817 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   + T      ++ + ++  AC GL+      +  +      DG+S  +++  L+
Sbjct: 2   DIMIKKRNQTYEPLCVEKTKRMIAFACEGLEGCDPIELELDARIQFVDGMSTKEIQKMLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             E   N+  V AR  +  L +E     + K      H    
Sbjct: 62  QTAIEKVIHTKKDEFGNIMRETHTNWQYVAARLFVFDLYKEAAIERHYK------HFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +       +EE +    L ++    ++  L   +K ERD+ F Y G+++L DRY +  +
Sbjct: 116 DFLNLVNSLVEEELYGSYLTDAYTQLEIKELGAYIKPERDYLFNYEGVKLLSDRYLVKGL 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
                E+PQ  FM +AM LA+ E   ++ + A +FY+LLSS     +TPTL N+GT   Q
Sbjct: 176 KKEVFELPQERFMVIAMHLAIPEEKAKRMEYAKKFYDLLSSLQMTVATPTLANAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ + ++K+ G LG     +R L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSSVSKHGGALGIYVGKIRALNSEIRGNKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTA+AV+Q G+RKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ TA  +P+
Sbjct: 296 VRLYNDTAIAVDQLGRRKGGATITLDIWHADLYDFLDLKTNNGDDRRKAHDIFTALSVPN 355

Query: 488 LFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           LFM+R+ +   W+LF P  V+      L D Y +  E  +       +  +      + A
Sbjct: 356 LFMERLERREEWSLFDPYLVNKVMGFSLEDSYDEVAENEFTKRYLACEECKELPRITVPA 415

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------ 596
           + + ++++    ETG P+I F+D  N  +P +H G+++SSNLC EIT N S  E      
Sbjct: 416 LEVMKRIMKSAVETGAPFIFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELREELI 475

Query: 597 -----------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                               CNL SI+L       + +   LA  I   +R+LDNVI +N
Sbjct: 476 QDESGAKVIITKIKPGDMVTCNLNSISL------GRIEKKDLAVNIPLQIRMLDNVITLN 529

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +A+ ++  +RAIGLG  G+   L    I + + + +E AD+  E I++ AI AS+
Sbjct: 530 QTPVAEARITSDKYRAIGLGTSGYHHYLVNHGIGWETQKHLEEADDLFEEIAYQAIKASM 589

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+G Y +F GS W+ G +                    +   W  L K V   GMR
Sbjct: 590 ELAKEKGKYEAFHGSEWETGEY--------------FKRRDYTSDRWLALSKEVAEHGMR 635

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N    A+APT + +NI   S  IDP ++  +++                +L   + W   
Sbjct: 636 NGYITAVAPTGSTSNIANTSAGIDPIFKRYFIEEKKG----SFIPKTAPDLNTSNFW--- 688

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
                                   ++  A  ID  + I +   RQ+ IDQ+QS NLY   
Sbjct: 689 ------------------------LYKEAHTIDQQFSIRACGIRQRHIDQSQSFNLYITP 724

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           E     +  +Y +AW  GLKT YY+R++S    E ++
Sbjct: 725 EYKAIDILNLYMEAWRKGLKTIYYVRNQSLEMDECTS 761


>gi|118602533|ref|YP_903748.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567472|gb|ABL02277.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 757

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 189/793 (23%), Positives = 330/793 (41%), Gaps = 81/793 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +K++  +G   S + +++  +V  A   L+ VS   V        +DG+   D+  
Sbjct: 1   MNQDIKVIKRNGQQESIDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI  E P+Y  + AR  +  LR++   +    P             E+  ++
Sbjct: 61  TIIKSAADLISIEVPDYQYLAARLTIFHLRKKAFKSFTPTP-----------LFEHIKKF 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
            +  +  + +       ++  L   + + RD  F Y  ++ L  +Y +   + G   E P
Sbjct: 110 TDLSIYDKEILNKYSKEEIETLGAYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESP 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ + M L  +     +      FY+ +S F     TP +    T   Q SSC L  
Sbjct: 170 QLLYVLIGMYLFQEYEASIRMDIVKRFYDAVSLFKISLPTPIMAGVRTPIRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL  I               G+G +   +R +G+ I G      G IPF K  +   
Sbjct: 230 VDDDLDSISAGAGAIVKYVSQRAGIGINGGKIRAIGSPIRGGEAIHTGCIPFYKHFHTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R  +
Sbjct: 290 KSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLK 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V  L+D +    +EF+  YE YE+     +    + I A  L+ K +  
Sbjct: 350 DDDITLFSPHDVPGLYDAFFANQEEFKRLYEQYEQ----NDSIRKQAIKARELFAKFMQE 405

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  ++   D CN  S        +  SNLC EITL +           E A+C L 
Sbjct: 406 RANTGRIYLQNVDHCNTHSAFDAKQAPIKQSNLCMEITLPTKPLYSVQDEQGEVALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL A  + N+       +     VR LD ++D   + I+ A+ S+ + R +G+G+   
Sbjct: 466 AVNLGALDSLNEM-----EALTDIIVRSLDCLLDYQDYPIKAAELSSKSRRTLGIGVTNL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+     ++  ++ E + ++++ AS  LA+E G    F  + + QG+ PI
Sbjct: 521 AYYLAKNGVKYSDGSGNQLIHKTFEALQYYSLKASNTLAKELGVCPLFSQTQYSQGIMPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           DS     +   +  +     L WD L++ +K+ G+RNS   A+ P  + + I   +  I+
Sbjct: 581 DSYKKDIDAFCDCKLE----LDWDTLRQNIKSTGLRNSTLTALMPCESSSQISNSTNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K +  G    +         +R      ++ D+K ++G +            
Sbjct: 637 PPRGFVSIKQSKDGILKQIVPEY-----ERLKNQYELLWDIKDNEGYLQ----------- 680

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLM 895
                               QK++DQ+ S N++ D PS         K       +A+  
Sbjct: 681 ---------------LCGIMQKFVDQSISTNMHYD-PSQFEGNRVPMKLFLMDLFRAYKY 724

Query: 896 GLKTTYYLRSRSA 908
           G+KT YY  +R  
Sbjct: 725 GIKTLYYHTTRDG 737


>gi|88801049|ref|ZP_01116597.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
 gi|88776188|gb|EAR07415.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
          Length = 757

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 197/805 (24%), Positives = 328/805 (40%), Gaps = 79/805 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L+I   DG L     +++  +++ A  GL+ VS   V  +     YDG+S +++   L+ 
Sbjct: 3   LQIKKRDGRLEPIQLEKIHRVLQWASEGLKKVSVSEVELKARIQFYDGMSTTEIHEMLVR 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  ++P+Y  + AR  +  LR++     ++ P             +   R + E 
Sbjct: 63  SAADLISDRQPDYQFMAARLAIFHLRKQAFGR-FEPPHVY----------DLVTRLVNER 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
               +L  +  + D   L   L + RD  F Y G++ L  +Y +     G   E PQ  +
Sbjct: 112 RYDPILLSAYSEADWDELNGCLDHSRDLDFAYAGVKQLQGKYLVQDRVTGRIFESPQFVY 171

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +   L      + +     +FY   S+  F   TP +    T   Q SSC L    D 
Sbjct: 172 LLIGACLFSGYPAETRLTYVKKFYQAASTHRFSLPTPIMAGVRTPTRQFSSCVLIECDDT 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RG+G+ I        G IPF K+      + +
Sbjct: 232 LDSINATSSSVVNYVSQRAGIGINAGRIRGIGSPIRSGEAFHTGCIPFYKLFQSAVKSCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ EE L L+ N G D  R   ++    +  L  +R+ Q++  
Sbjct: 292 QGGIRGGAATVFYPLWHIEAEELLVLKNNRGVDENRCRHLDYGVQLNRLMYQRLIQDSHI 351

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP EV  L+D + ++   FE  Y+ YE           RK++A  L+  ++     T
Sbjct: 352 SLFSPSEVPGLYDAFFEDQARFETLYKQYEEDTSIRR----RKVNARDLFALLMQERAST 407

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN   P       +  SNLC EI L +           E A+C L ++NL
Sbjct: 408 GRIYIQNVDHCNEHGPFDPAKAPIRQSNLCMEIALPTKPLQSLDDEQGEIALCTLAAVNL 467

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               + +  D      T    VR LD ++D   + ++ A+ S H  R +G+G++ +   L
Sbjct: 468 GVLDSLDDID-----ETAELLVRALDALLDYQHYPVKAAELSTHKRRPLGVGVINYAYYL 522

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y    A  +   + E + F  +SAS  LA+E+GA S F  +   +G  PID   
Sbjct: 523 AKHGYRYDDEGAKGLTHRTFERLQFALLSASNRLAREQGACSGFAETKLAKGSMPIDRY- 581

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +   +          W  L++ +   G+RNS   A+ P+ T A I   +  I+P   
Sbjct: 582 ---KADLDAVCQEPLLCDWAALRESILEHGVRNSTLSALMPSETSAQIANATNGIEPPRA 638

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V   +     +R      ++ D + + G                  
Sbjct: 639 LVSIKASKDGVLKQVVPEI-----ERLADQYDLLWDQQSNAG------------------ 675

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK----KLDFIYRQAWLMGLKTT 900
                    +  A+  QK++DQA S N        P  K     L      A+ +GLKT 
Sbjct: 676 --------YLALAAIMQKFVDQAISSNTSYQPERYPDRKVPMQTLLGDLLTAYKLGLKTL 727

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNA 925
           YY  +R  ++   +  + +     +
Sbjct: 728 YYHNTRDGSAANHNQKETIAESCES 752


>gi|149182582|ref|ZP_01861053.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148849718|gb|EDL63897.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 746

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/785 (31%), Positives = 374/785 (47%), Gaps = 89/785 (11%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVT 220
            +++E     Q VS +    +    +     ++   L+  LI ++   I  +EP +  V 
Sbjct: 14  RLLKELRERHQSVSFEEYEEKVLDTLEAKGDVTAEQLDNMLILAAVERISSQEPEWTYVA 73

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           A   L KL R    +    P+K         + E   +  E G+    L +     ++  
Sbjct: 74  ADIYLRKLYRASAESRGTDPEKGYGS-----FYEMMAQLEEMGIYDTRLLQKYSRDEIDS 128

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKR- 338
           L   +  ERD  F Y+G+  L +RY    + G  IE+PQ  FM +AM L   E E+++  
Sbjct: 129 LERIINPERDGLFTYIGIVTLAERYLAKSHAGHFIELPQERFMIIAMTLLADEPEEKRLT 188

Query: 339 -AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
              E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV DDL  I+ +  + + L+K  
Sbjct: 189 LIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVEDDLRSIYDSNTDVSTLSKNG 248

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G     +R  G+ I G  G S G+IP++K  N+TAV+V+Q G+R+GA+  YL+ WH 
Sbjct: 249 GGIGIYLGKIRSRGSDIKGFKGVSSGIIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHK 308

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHD 512
           D+  FLD + N GD+R+RTHD+ T   +PDLFM++V +   W LF P EV       L D
Sbjct: 309 DIFPFLDSKLNNGDERQRTHDLFTGVCLPDLFMEQVEKRGDWYLFDPHEVRKVMGFSLED 368

Query: 513 LYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            Y ++       E Y       E+   + + A+ L++ ++    ETG P++ ++D  N  
Sbjct: 369 HYDEQPGQGSFREKYWACVFHPELS-HQTVPAIELFKSIMISQLETGTPYMFYRDTVNRF 427

Query: 571 SPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLLAHF 611
           +  QH G+++ SNLCTEIT N S                     +  VCNL S++L    
Sbjct: 428 NANQHKGMIYCSNLCTEITQNMSATVMEEERVEDGTIITYKKPGDYVVCNLSSLSLAKAV 487

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +       L   I  AVR+LDNVIDIN   + +A+ +N  +R IGLG  G+   L L  
Sbjct: 488 QDGV-----LKEVISIAVRMLDNVIDINDIPVLQAQLTNERYRGIGLGTYGWHHLLALKG 542

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I + S EA+E  D   E I+F  I AS  LA+E+GAY  F GS W  G +          
Sbjct: 543 IKWESEEALEYCDSLYEDIAFFTIKASAALAKEKGAYPYFTGSEWAAGSY---------- 592

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                     +   W ELK+ VK  G+RN   MA+AP+++ + I G + SIDP ++  Y 
Sbjct: 593 ----FEKRDYTSPRWLELKEEVKEHGVRNGYLMAVAPSSSTSLIAGSTASIDPVFRLEYS 648

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +        V                                   +       + TA+ I
Sbjct: 649 EEKKDYKIPVTAP-------------------------------DLSPHTTWYYKTAYNI 677

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           D  W I+  ++RQ+ IDQ+ S NLY+      K L  I+  AW  GLKTTYY+RS S   
Sbjct: 678 DQHWSIKQNAKRQRHIDQSISFNLYVRNDIKAKALLDIHLHAWKAGLKTTYYVRSTSNAE 737

Query: 911 VEKST 915
           ++   
Sbjct: 738 IDDCE 742


>gi|302386032|ref|YP_003821854.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
 gi|302196660|gb|ADL04231.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
          Length = 752

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/809 (30%), Positives = 383/809 (47%), Gaps = 108/809 (13%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLET 200
              L+   + G L       +      A   L+ +S K      +       ++  +   
Sbjct: 8   QEILESFKELGELEEV-LDGIRQEWGSASYDLKHLSIK------FTGFCKKNMNLEERLG 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLL--EKLR-REVLTTVYKKPQKATHHEMQCLYPEYF 256
           ALI ++  L  +E P++  + AR L+    +R +E L                  + +  
Sbjct: 61  ALIQAAVELTTQEAPDWEYIGARLLMVRFNIRLKEELGRR-----------KIGSFFDKI 109

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIE 315
           C   EEG+    + E+    ++      +   R+  F Y GL++L +RY +  + +  +E
Sbjct: 110 CFLTEEGLYGDYILENYNKEEIQRFEGYMDQTRNHLFNYSGLELLLNRYVIRSHQNAPLE 169

Query: 316 MPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            PQ  F+ +AM LA+ ET ++E     FY++LS+     +TPTL N+   + QLSSCF+ 
Sbjct: 170 TPQEMFLGIAMHLAMNETVDREAWVKRFYHMLSTLKVTMATPTLSNARKPYHQLSSCFID 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++K+ANDT
Sbjct: 230 TVPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVVRWIKLANDT 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAV+Q G R+GAV  YL+ WH D+ EFL L+ N GDDR + HD+      P+LF K+  
Sbjct: 290 AVAVDQLGMRQGAVAVYLDVWHKDLPEFLTLKTNNGDDRMKAHDVFPGVCYPNLFWKQAK 349

Query: 495 QN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +N    W L  P E+       L D YG ++E  Y +    +   +    R I    + R
Sbjct: 350 ENIEGDWYLMCPHEILTVKGWALEDFYGIQWEERYLDCVSDSRIHK----RIIPIKDIIR 405

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
            +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S              
Sbjct: 406 LVLKSAVETGTPFTFNRDIVNEANPNSHCGMIYCSNLCTEIAQNMSTVEQLEQQIRWVDG 465

Query: 594 ---------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                      +  VCNL S++L      +  D  +LA   R+AVR LDNVID+N   I 
Sbjct: 466 ETVVVTVTKPGDFVVCNLASLSLGKI---DLTDTQELAELTRSAVRALDNVIDLNFFPIP 522

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            AK +N  +R +GLG+ G+   L    I + S E +E +D   E I++ AI AS + A+E
Sbjct: 523 YAKVTNLRYRPVGLGVSGYHHMLAKNGISWESQEHLEFSDRVFEAINYAAIQASCDFARE 582

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y  F+GS W  G +  D  G  +E              W  L+++V   GMRN   +
Sbjct: 583 KGRYDLFEGSQWQTGAYF-DKRGYCSEK-------------WKSLREKVAAYGMRNGWLL 628

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT++ + I G +  +DP     Y++   SG    V   L  E      W        
Sbjct: 629 AIAPTSSTSMIAGTTAGLDPVLNRYYLEEKKSGLVPRVAPDLSPE----TFWK------- 677

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                               +  A  ID  W + +A  RQ+ +DQAQS+NLY  ++ + +
Sbjct: 678 --------------------YKNAHYIDQKWSVRAAGVRQRHVDQAQSMNLYITNDYTLR 717

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  +Y  AW  G+KT YY+RSRS    E
Sbjct: 718 QVLGLYILAWECGVKTIYYIRSRSLEVEE 746


>gi|329928245|ref|ZP_08282156.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
 gi|328937963|gb|EGG34364.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
          Length = 792

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/813 (29%), Positives = 382/813 (46%), Gaps = 87/813 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +    ++  ++ +A   S
Sbjct: 20  VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 79

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 80  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 136

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 137 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 196

Query: 324 VAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 197 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 256

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 257 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 316

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 317 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 376

Query: 501 LFSPDEVS-------------DLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALW 546
           LF P EV               L D Y     E  +     +A    +     + A+ + 
Sbjct: 377 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 436

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------- 593
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 437 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 496

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 497 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 551

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 552 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 611

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 612 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 667

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +   +            +L ++ +W       
Sbjct: 668 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTTYKVANPAP----DLSEKTIW------- 716

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY   +   
Sbjct: 717 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 756

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +   ++  AW  G+K+TYY+RSR+ T  E  +
Sbjct: 757 SEFLELHLHAWKAGIKSTYYVRSRALTIEECES 789


>gi|261404532|ref|YP_003240773.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           sp. Y412MC10]
 gi|261280995|gb|ACX62966.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. Y412MC10]
          Length = 777

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/813 (29%), Positives = 382/813 (46%), Gaps = 87/813 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +    ++  ++ +A   S
Sbjct: 5   VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 65  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 181

Query: 324 VAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 361

Query: 501 LFSPDEVS-------------DLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALW 546
           LF P EV               L D Y     E  +     +A    +     + A+ + 
Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------- 593
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 422 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +   +            +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTTYKVANPAP----DLSEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY   +   
Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +   ++  AW  G+K+TYY+RSR+ T  E  +
Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALTIEECES 774


>gi|253574543|ref|ZP_04851884.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846248|gb|EES74255.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 777

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 250/813 (30%), Positives = 382/813 (46%), Gaps = 87/813 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE-SDLETALIFS 205
           +   +   ++F+S RL +  +    GL +V  + +L      +   +    ++  A   S
Sbjct: 5   VTKPNNRQLAFDSARLGVYADRILQGLHNVDKERLLRGVNAKLRRDVVTGEEISNAFTMS 64

Query: 206 SRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ K EP++    AR LL  L ++       +  KA   E    +        + G+
Sbjct: 65  ALELVSKDEPDWKYAAARSLLTSLYKKAA---VNRRYKAYPEEPYGSFYHLITELCQLGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               L E      +  L   +    D  F+Y+GL  L +RY     +G  +E+PQ  +M 
Sbjct: 122 YREELLECYTKEQIEELGRTIDPSCDLLFDYIGLLTLTERYLATDFDGRTMELPQERYMV 181

Query: 324 VAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL 380
           +AM L  KE E+++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMYLMHKEPEEKRLELVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W 
Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGEWH 361

Query: 501 LFSPDEVS-------------DLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALW 546
           LF P EV               L D Y +E    ++     +A          + A+ + 
Sbjct: 362 LFCPHEVKKTMGWKDENGRPLGLEDFYDEELGKGSFREKYAEAVAHPTLSRITMPAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------- 593
           ++++    ETG P++ ++D  N  +P +  G+++SSNLCTEI  N S             
Sbjct: 422 KRIMKSQLETGTPYMFYRDTVNRANPNRAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +    R+LDNVIDIN   +
Sbjct: 482 GQTRIVVSKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQTRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RAIGLG  G    L L  I + S EAVE  D   E I++  I +S+ELA+
Sbjct: 537 LQAQYTNSQYRAIGLGTFGLHHLLALEGIRWESQEAVEYNDALYEKINYLLIKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  F GS W+ G +  +S G +   R+   +   +   W EL+K V+  G+RN+  
Sbjct: 597 EKGKYPKFAGSDWETGQYF-ESRGYVDGTREGKYV---TTEQWRELQKEVRENGVRNAWM 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +   +            +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTTYKIANPAP----DLSEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + TAF ID  W IE A  RQ+ +DQ QS NLY   +   
Sbjct: 702 --------------------YYKTAFLIDQHWSIEMAGARQRHVDQGQSFNLYVRPDIRA 741

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
                ++  AW  GLK+TYY+RSR+ T  E  +
Sbjct: 742 TDFLDLHLHAWKAGLKSTYYVRSRALTIEECES 774


>gi|325663146|ref|ZP_08151596.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470600|gb|EGC73830.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 750

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 371/775 (47%), Gaps = 95/775 (12%)

Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
           L  V S   L E Y   Y  G S  +    L+ ++  L  +E P +  + AR  L   R 
Sbjct: 30  LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E+   + ++   + + ++        C   +E +    + E+  + ++      ++ ERD
Sbjct: 90  ELKEQMKQRNVNSFYEKI--------CYLTKENLYGAYILENYTEEEITAFEKLMREERD 141

Query: 291 FAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSS 348
             F Y GL++L +RY +      + E PQ  F+ +AM LA+KE  ++     +FYN+LS 
Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSGWVEKFYNMLSK 201

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K  GG+G  +  VR
Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL+LR N
Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GDDR + HD+      PD F ++   N    W L  P E+       L D +G+E++  
Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +     +       R I    + R ++  + ETG P+   +D  N  +P  H G+++ 
Sbjct: 382 YLDCVADPEI----QKRVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437

Query: 582 SNLCTEITLNSSS-----------------------EETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L     NN+   
Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVNNK--- 494

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+   L    IP+ S E
Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            +  A+     I + A+ AS ELA+E+G+Y+ F+GS W  G +               A 
Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAKEKGSYTYFEGSKWQTGEY--------------FAE 600

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W  L K++   GMRN   MAIAPT + + I G +  IDP     +++   SG 
Sbjct: 601 RHLTEDRWKNLAKKIMENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V                                  +  D    +  A  ID  W + 
Sbjct: 661 LPRVAP-------------------------------ELTMDTFWYYKNAHHIDQTWSVR 689

Query: 859 SASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   RQ++IDQAQS+NLY  +E + +K+  +Y  AW  G+KT YY+RS+S    E
Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKSLEVEE 744


>gi|331086749|ref|ZP_08335826.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409915|gb|EGG89350.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 750

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 246/775 (31%), Positives = 372/775 (48%), Gaps = 95/775 (12%)

Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
           L  V S   L E Y   Y  G S  +    L+ ++  L  +E P +  + AR  L   R 
Sbjct: 30  LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E+   + ++   + + ++        C   +E +    + E+  + ++      ++ ERD
Sbjct: 90  ELKEQMKQRNVNSFYEKI--------CYLTKENLYGAYILENYTEEEITAFEKLMREERD 141

Query: 291 FAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSS 348
             F Y GL++L +RY +      + E PQ  F+ +AM LA+KE  ++     +FYN+LS 
Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSVWVEKFYNMLSK 201

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K  GG+G  +  VR
Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL+LR N
Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GDDR + HD+      PD F ++   N    W L  P E+       L D +G+E++  
Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +     +       R I    + R ++  + ETG P+   +D  N  +P  H G+++ 
Sbjct: 382 YLDCVADPEI----QKRVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437

Query: 582 SNLCTEITLNSSS-----------------------EETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L     NN+   
Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVNNR--- 494

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+   L    IP+ S E
Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            +  A+     I + A+ AS ELA+E+G Y+ F+GS W  G +               A 
Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAREKGCYTYFEGSKWQTGEY--------------FAE 600

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W +L K+V+  GMRN   MAIAPT + + I G +  IDP     +++   SG 
Sbjct: 601 RHLTEDRWKKLAKKVRENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V                                  +  D    +  A  ID  W + 
Sbjct: 661 LPRVAP-------------------------------ELTMDTFWYYKNAHHIDQTWSVR 689

Query: 859 SASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   RQ++IDQAQS+NLY  +E + +K+  +Y  AW  G+KT YY+RS+S    E
Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKSLEVEE 744


>gi|308067266|ref|YP_003868871.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305856545|gb|ADM68333.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 777

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/811 (30%), Positives = 387/811 (47%), Gaps = 89/811 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFS 205
           +   +   ++F+  R+ +  +   SGL  +    ++      +    ++  D+  A   +
Sbjct: 5   VTKPNNRQLAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDDISNAFAMA 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE P++    AR LL  L ++  T  +++ +          YP      ++ G+
Sbjct: 65  ALELVSKEEPDWKFAAARALLTSLYKKAAT--HRRYKSYADEPYGAFYP-LITDLVQRGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
             + L +      +  L + +  + D  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 122 YRQELLDYYTKEQIDELGDSILPKNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMI 181

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL 380
           +AM L  +E   ++ +   E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+RV     W 
Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWN 361

Query: 501 LFSPDEVS-------------DLHDLYGKEF--EIAYENYERQADRGEIKVFRKISAVAL 545
           LF P EV               L D Y + F      E YE  +    +     + A+ +
Sbjct: 362 LFCPHEVKKVMGWKDDNGRPLGLEDFYDETFGSGTFREKYEEASQHPILSRI-TVPAIDI 420

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------ 593
            ++++    ETG P++ ++D  N  +P +  G+V+SSNLCTEI  N S            
Sbjct: 421 MKRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEELVTK 480

Query: 594 -----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
                        +  VCNL SI+L         D       +   VR+LDNVIDIN   
Sbjct: 481 DGQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDINNIE 535

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++ A+ +S+ELA
Sbjct: 536 VLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSMELA 595

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+G Y+ F+GS W  G +   S G     R+   +  +    W EL + VK  G+RN+ 
Sbjct: 596 KEKGRYAKFEGSDWSTGHYFT-SRGYTDGTREGKFVTTSE---WSELSEEVKQNGVRNAW 651

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             AIAP  + + I G + SIDP Y+ L  +   +            +L ++ +W      
Sbjct: 652 LFAIAPNGSTSIIAGSTASIDPLYELLSYEEKTTYKIANPAP----DLNEKTIW------ 701

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPS 881
                                 + TAF +D    I  AS RQ+ IDQ QS NLY   +  
Sbjct: 702 ---------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYVRPDIK 740

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +   ++  AW  G+K+TYY+RSR+ T  E
Sbjct: 741 ATEFLELHIHAWKSGMKSTYYVRSRALTIEE 771


>gi|21672461|ref|NP_660528.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091141|sp|Q8K9W3|RIR1_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|21623076|gb|AAM67739.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 763

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 193/806 (23%), Positives = 338/806 (41%), Gaps = 81/806 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G     N  ++  ++  A  GL+++S   V   +    Y+ +S  ++  
Sbjct: 1   MKNSLFVTKRNGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRIQFYNNISTVNIHE 60

Query: 201 ALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI E  P+Y  + AR  +  LR++     ++ P    H            + 
Sbjct: 61  TIIKAAADLISENTPDYQYMAARLAIFHLRKKAYGQ-FEPPNLYYH----------VKKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G     L ++    + V + + + + RD  F Y  ++ L  +Y L   + G   E  
Sbjct: 110 VQLGKYDEKLLQNYSFEEYVEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ ++  L  K  +K +      FYN +S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILISACLFSKYEKKVRMNYIQRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D+L  I               G+G +   +R LG+ I        G IPF K      
Sbjct: 230 CADNLNSINATTSAIVKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH+++E  L L+ N G +  R   ++ A  I  L  +R+  
Sbjct: 290 KSCSQGGVRGGAATVFYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLL 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   F+  Y  YE+          + I+A+ L+  ++  
Sbjct: 350 GQKITLFSPSDVPKLYEFFFSDQKKFKEIYIKYEK----NRNIRKKSINAIDLFCLIMRE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLG 603
              TG  +I   D CN  S     +  +  SNLC EITL +           E A+C L 
Sbjct: 406 RASTGRIYIQHVDHCNSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           ++NL         D   L      +VR LD +++   + +  AKKS  + R++G+G++ F
Sbjct: 466 ALNLGLIN-----DLHDLKELSTLSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINF 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +  ++ E I ++ + AS ELA+E+G+ S F  + +  G FPI
Sbjct: 521 AYYLAKNKVRYSDGSAKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPI 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+         +   N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+
Sbjct: 581 DTYKKDI----DSICNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIE 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNEL-KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + +KS+  G    V         +   LW                    IP+++ 
Sbjct: 637 PPRGFISIKSSKDGMLRQVVPEYKKLKSEYELLW-------------------EIPNNIG 677

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +             E  +  QK++DQ+ S N   D       +   K+L +    A+ +
Sbjct: 678 YL-------------ELVAIMQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKL 724

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDG 921
           G+KT YY  +R      ++  K ++ 
Sbjct: 725 GIKTLYYQNTRDGAEDNQNLNKSIEN 750


>gi|310639979|ref|YP_003944737.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309244929|gb|ADO54496.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 812

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/844 (29%), Positives = 397/844 (47%), Gaps = 98/844 (11%)

Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
            Y L    +S  R             P+L +   +   ++F+  R+ +  +   SGL  +
Sbjct: 19  AYSLSMNSKSRKRGINP--------MPQL-VTKPNNRQLAFDEIRISVYADRVLSGLDKL 69

Query: 177 SSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLT 234
               ++      +    ++  ++  A   ++  L+ KE P++    AR LL  L ++  T
Sbjct: 70  DKDRLIRGVTSKLRRDEVTGDEISNAFAMAALELVSKEEPDWKFAAARALLTSLYKKAAT 129

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
             +++ +          YP      +++G+  + L +      +  L + +  + D  F+
Sbjct: 130 --HRRYKSYADEPYGAFYP-LITDLVQKGIYRQELLDCYTKEQIDELGDSILPQNDLLFD 186

Query: 295 YLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHF 351
           Y+GL  L +RY  +  +G  +E+PQ  +M +AM L  +E   ++ +   E Y  +S+ + 
Sbjct: 187 YIGLLTLSERYLANDFDGRVMELPQERYMIIAMYLMHQEPADKRMELVKEAYWAMSNMYM 246

Query: 352 MCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT+ N+G +   QLSSCF+ TV D L GIF +  + A L+K  GG+G     VR  
Sbjct: 247 TAATPTMSNAGKKVAGQLSSCFIDTVDDSLEGIFDSNTDVARLSKMGGGIGVYLGKVRAR 306

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G    S GVIP+++  N+TAV+V+Q G RKGA+  YL+ +H D+  FLDL+ N G
Sbjct: 307 GSDIRGHKNTSSGVIPWIRQLNNTAVSVDQLGTRKGAIAVYLDVFHKDILAFLDLKLNNG 366

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-------------DLHDLYGKE 517
           D+R R HD+     +PDLFM+RV     W LF P EV               L D Y + 
Sbjct: 367 DERMRAHDVFHGVCLPDLFMERVEARGEWNLFCPHEVKKVMGWKDDKGRPLGLEDFYDEA 426

Query: 518 F--EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           F      E YE  +    +     + A+ + ++++    ETG P++ ++D  N  +P + 
Sbjct: 427 FGSGSFREKYEEASKHPILSRI-TVPAIDIMKRLMKSQLETGTPYMFYRDTVNRANPNRA 485

Query: 576 VGVVHSSNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFA 612
            G+V+SSNLCTEI  N S                         +  VCNL SI+L     
Sbjct: 486 HGMVYSSNLCTEIMQNQSATVVEKEELVTKDGQTRIVISKIPGDFVVCNLNSIHLARAVP 545

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D       +   VR+LDNVIDIN   + +A+ +N  +RA+GLG  G    L L  I
Sbjct: 546 AGVLD-----RLVPIQVRMLDNVIDINNIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGI 600

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + S EAV   D   E I++ A+ +S+ELA+E+G Y+ F+GS W  G +   S G     
Sbjct: 601 RWESDEAVTYNDHLYEKINYLAVKSSMELAKEKGRYAKFEGSDWATGHYFT-SRGYTDGT 659

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           R+   +  +    W EL + V+  G+RN+   AIAP  + + I G + SIDP Y+ L  +
Sbjct: 660 REGKFVTTSE---WSELAEEVQQNGVRNAWLFAIAPNGSTSIIAGSTASIDPLYELLSYE 716

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
              +            +L ++ +W                            + TAF +D
Sbjct: 717 EKTTYKIANPAP----DLNEKTIW---------------------------YYKTAFLLD 745

Query: 853 PMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I  AS RQ+ IDQ QS NLY   +    +   ++  AW  G+K+TYY+RSR+ T  
Sbjct: 746 QHASINMASARQRHIDQGQSFNLYVRPDIKATEFLELHIHAWKSGMKSTYYVRSRALTIE 805

Query: 912 EKST 915
           E  +
Sbjct: 806 ECES 809


>gi|89097913|ref|ZP_01170800.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087415|gb|EAR66529.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 769

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/745 (33%), Positives = 367/745 (49%), Gaps = 83/745 (11%)

Query: 194 SESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           S  +L   LI  S ++I + EP++  V AR  L  L  +       + +++T  E     
Sbjct: 66  SNDELLNQLILDSLSMISEAEPDWTYVAARLYLSSLYEKAA-----EHRRSTAGESYGPL 120

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   + GV + +L ES    ++  +   +  E+D  F Y+ +++L DRY       
Sbjct: 121 YGLITDLTDAGVYSPVLLESYTKEEIDIIGTYIDPEKDRLFTYIAVKMLADRYLSRDKKK 180

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           R+ E+PQ  FM ++M L   E ++ +     E Y  LS+ +   +TPTL N+G    QLS
Sbjct: 181 RLFELPQERFMIISMTLNRSEPKERRLSLIKESYWALSNLYMTAATPTLSNAGKNWGQLS 240

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GV+P++K
Sbjct: 241 SCFIDTVDDSLQGIYDSNTDIANLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVLPWMK 300

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             N+TAV+V+Q G+RKGAV  YL+ WH D+  FLD + N GD+R RTHD+ T   +PDLF
Sbjct: 301 QLNNTAVSVDQLGQRKGAVSVYLDIWHKDIFSFLDSKLNNGDERYRTHDLFTGVCLPDLF 360

Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           M+ V     W LF P EV       L D Y ++         YE       +   +K+ A
Sbjct: 361 METVEARGDWHLFDPHEVRSVMGFSLEDFYDEKPGAGSFRVKYEECVANPRLSK-QKVPA 419

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
           + + ++++    ETG P++ ++D  N ++P +H+G+++ +NLCTEI  N S         
Sbjct: 420 IDIMKRIMISQLETGTPFMFYRDEVNRKNPNRHLGMIYCTNLCTEIVQNQSATITKDQRE 479

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SINL    A++      L   I   VR+LDNVID+N   +
Sbjct: 480 EDGRIIIEKIPGDFVVCNLSSINLARAAADHV-----LERLIPIQVRMLDNVIDLNTIPV 534

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +   +N  +RAIGLG  G+   L L  + + + EAV +ADE  E I+F  I AS+ LA 
Sbjct: 535 LQGVATNRKYRAIGLGTFGWHHLLALKKLRWENEEAVRLADELYEKIAFLTIKASMNLAM 594

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G+Y  FKGS W  G +                 +  S   WD L + V+  G+RN   
Sbjct: 595 EKGSYPGFKGSDWHSGEYFT----------SRGYSSLDSVHDWDSLMQAVRKNGIRNGYL 644

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MA+AP A+ + I G S SIDP ++  Y +        V       +L +   W       
Sbjct: 645 MAVAPNASTSIIAGSSPSIDPIFRKFYSEEKKDYKIPVTAP----DLNEHTTW------- 693

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + +A+ ID  W I   S+RQK IDQA S NLY  +    
Sbjct: 694 --------------------YYKSAYVIDQHWSILQNSKRQKHIDQAISFNLYVQNNIKA 733

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           K+L  ++  AW  GLKTTYY+RS S
Sbjct: 734 KELLDLHLSAWKNGLKTTYYVRSTS 758


>gi|294501622|ref|YP_003565322.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium QM B1551]
 gi|294351559|gb|ADE71888.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium QM B1551]
          Length = 747

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/795 (30%), Positives = 383/795 (48%), Gaps = 87/795 (10%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
           TL       L   +E        +   +   +  + +   + +++  +   LI ++   I
Sbjct: 4   TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V A   L +L R+         +     E    + +   +  + G+  + L
Sbjct: 64  SMEEPDWTYVAADVYLNELYRKAADN-----RGYDKKEKYGSFYQLIQKLTKIGIYNKQL 118

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGL 328
            ++  + ++  +A+ +  ERD  F Y+GL  L DRY    +  R  E+PQ  F+ +AM L
Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178

Query: 329 ALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
             +E ++ + A   E Y  LSS +   +TPTL N+G  + QLSSCF+ T+ D L GI+ +
Sbjct: 179 MSQEKKENRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K  GG+G     +R  G+ I G  G S G IP++K  N+TAV+V+Q G+R+G
Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+  YL+ WH D+  FLD R N GD+R+RTHD+ T   +PDLFM++V     W LF P E
Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358

Query: 507 V-----SDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           V       L D Y +E    ++     +    E      + A+ ++++++    ETG P+
Sbjct: 359 VRTLMGYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETGTPY 418

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + ++D  N  +  +H G+++ SNLCTEIT N S                     +  VCN
Sbjct: 419 MFYRDTVNRANQNRHEGIIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCN 478

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L SINL           D L   I   VR+LDNVI++N   + +AK +N  +RA+GLG  
Sbjct: 479 LSSINLARAVTE-----DVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTF 533

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G+   L L  I + + EAV   DE  E I++  + AS+ LA+E+GAY  FKGS ++ G +
Sbjct: 534 GWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY 593

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                             + +   W EL+  V++ G+RN   MA+AP ++ + I G + S
Sbjct: 594 --------------FETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTAS 639

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           IDP ++  Y +   +    V    L                                   
Sbjct: 640 IDPIFRKFYSEEKKNYKIPVTAPDLSPA-------------------------------T 668

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTT 900
              + + + ID  W I+  ++RQ+ IDQ+ S NLY+      K+L  ++  AW   LKTT
Sbjct: 669 NWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMTAWKEKLKTT 728

Query: 901 YYLRSRSATSVEKST 915
           YY+RS S+  +E+  
Sbjct: 729 YYVRSTSSEVIEECE 743


>gi|325294458|ref|YP_004280972.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064906|gb|ADY72913.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 222/818 (27%), Positives = 393/818 (48%), Gaps = 86/818 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++  +G+    N +++  ++  A  GL+ V++  + S+   + YDG++  ++  +++
Sbjct: 3   KISVVKRNGSKEPLNIEKIRKVINWAAKGLE-VNTLKLESKLKLHFYDGITTREIHKSIV 61

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L   +EP++  +  R  +  L +EV  ++ +   K  +      Y +     +E+
Sbjct: 62  NTALQLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYIGGGKEYLKVLKDLVEK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+    + +S  + ++V   + LK E DF ++Y G  +L  RY        IE+PQ  +M
Sbjct: 120 GLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAKRYLCIYEDYPIELPQEMYM 179

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ LA  E   ++     +FY+L++      +TP L N    +  LSSCF+T + D L
Sbjct: 180 SIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDSL 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     + A ++K +GG+G + + +R  G+ I    G S GV+P++++ ND AVAVNQ
Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWIRILNDIAVAVNQ 299

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GKR GAV   L+ WH+D+ +FL+L+   GD RR+  D+     IPDLFM+RV ++  W 
Sbjct: 300 EGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRKAFDIFPQVVIPDLFMERVKKDKDWL 359

Query: 501 LFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P EV       L++L+G+EFE AY   E+++ + ++K   K   +   +++L     
Sbjct: 360 LVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKESYKLKLKKKVKAKELL--KEILKTQVA 417

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+I FKD  N  +P +H G + + NLC E   N    +                   
Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKSFKTTLEKGKIVSKVEKPG 477

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNL SINL     + +     L   +RTAVR+LDN ID+    I ++K  N  +R 
Sbjct: 478 LVHTCNLLSINLANIENDKE-----LEDVVRTAVRILDNTIDLTTSPILESKLHNDRYRT 532

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G +G    L    IPY   +++ + DE  E I+++ I  S+ LA+ERG + +F+GS 
Sbjct: 533 IGIGTLGLADYLAKREIPYG-KQSLNLIDELYEKIAYYGIDESINLAKERGKFQAFEGSD 591

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+       ++ + R+ L      +  W  + +++K  G+RN    AIAP  +   +
Sbjct: 592 WSRGI-------IIGKDREYLLKKTHLKEKWLTVLEKLKKYGIRNGQLFAIAPNTSSGLL 644

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  + P +   Y+  N      +   +L     ++  W                   
Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KKKFW------------------- 680

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQA 892
                    +  +  ++   +I+  S  Q+W+D   S+ L  +   G +   I+     A
Sbjct: 681 --------FYRESKFLNQKEVIDVISTIQRWVDSGISMELLFNLNLGVRAKDIFETVIYA 732

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           W  G+KT YY+R+     ++K +   +  K   V   +
Sbjct: 733 WEKGIKTIYYVRT-----IQKDSQTAISKKEECVACAN 765


>gi|315644972|ref|ZP_07898100.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
 gi|315279683|gb|EFU42985.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
          Length = 777

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/813 (29%), Positives = 381/813 (46%), Gaps = 87/813 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +    ++  ++ +A   S
Sbjct: 5   VVKPNNRQLAFDEIRLSVYADRNLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 65  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY     +G  +E+PQ  +M 
Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLATDFDGRVMELPQERYMV 181

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMFLMHNEPADKRIDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGICLPDLFMEAVEAREEWS 361

Query: 501 LFSPDEVS-------------DLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALW 546
           LF P EV               L D Y +   +  +     +A          + A+ + 
Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDQAQGDGEFRQKYAEAVANPQLPRITVQAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------- 593
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 422 KRVMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +   +            +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKTTYKVANPAP----DLSEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY   +   
Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +   ++  AW  G+K+TYY+RSR+ T  E  +
Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALTIEECES 774


>gi|212638242|ref|YP_002314762.1| ribonucleotide-diphosphate reductase subunit alpha [Anoxybacillus
           flavithermus WK1]
 gi|212559722|gb|ACJ32777.1| Ribonucleotide reductase, alpha subunit [Anoxybacillus flavithermus
           WK1]
          Length = 758

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 244/801 (30%), Positives = 379/801 (47%), Gaps = 94/801 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
                N + +  ++         +SS+  +  T +++    S  D+   LI ++   I  
Sbjct: 5   QQTEVNEETIRTLLFHIFKDFPHLSSERYIERTIRSLTYTKSHDDMMNKLILNALDEITV 64

Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           E P++  V AR  L++L  E              +     + E     +  G+    + E
Sbjct: 65  EQPDWTFVAARLYLQQLYNEAAINRGYDVSDTYRY-----FYELQTMLVNLGIYDPFVLE 119

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL 330
                +L      +  ++D  F Y+GL+ L DRY     +G   E+PQ  F+ +A+ L +
Sbjct: 120 RYTKEELQEAGTWIDPKKDEQFTYIGLKTLVDRYLAKGYDGEIYELPQERFLTIALTLMV 179

Query: 331 KETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            E+++++     E Y  LS+ +   +TPT  N+G  + QLSSCF+ TV D L GI+ +  
Sbjct: 180 NESKEKRMELVKEAYWALSNQYMTVATPTYANAGKSYGQLSSCFIDTVDDSLIGIYESNT 239

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     +R   + I G  G S GVIP+++  N+TAV+V+Q G R+G++
Sbjct: 240 DVARLSKGGGGIGVYLGKIRARNSDIKGFKGVSSGVIPWMRQLNNTAVSVDQLGTRQGSI 299

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ WH D+  FLD + N GD+R++ HD+     IPDLFM++V +   W LF P EV 
Sbjct: 300 AVYLDVWHKDIFSFLDAKLNNGDERQKCHDLFYGVCIPDLFMEQVEKRGDWYLFDPHEVK 359

Query: 509 -------------DLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                         L D Y +E       E YE   +  E+   R + A+ + +++L   
Sbjct: 360 KVMGWKDTDGNPLGLEDFYDEERGRGSFREKYEECINHPELSKER-VPAIEIMKRILKSQ 418

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------S 594
            ETG P++ ++D  N  +P +H G+++SSNLCTEI  N S                    
Sbjct: 419 LETGTPYMFYRDEANRMNPNKHAGMIYSSNLCTEIMQNMSPTTVTKEYTQDGEIIIHKKP 478

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHT 652
            +  VCNL SI+L     +     D L   I   VR+LDNVID+N + IE  +A  +N  
Sbjct: 479 GDFVVCNLSSIHLARAVQD-----DVLERLIPIQVRMLDNVIDLNENRIEVLQAVMTNKK 533

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG   +   L L  I + S E+V+ AD+  E I++  I AS+ELA+E+GAY +F 
Sbjct: 534 YRAIGLGAFSWHHLLALKGIKWNSEESVDFADKLFEKIAYLTIRASMELAKEKGAYPAFA 593

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +            D    +    L WDELK++V   G+RN   MA AP A+ 
Sbjct: 594 GSDWHTGKYF-----------DLRGYHSHDELDWDELKQQVMRHGIRNGYLMAPAPNAST 642

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S DP +  LY +   +          V +L  +  W                
Sbjct: 643 SVLANGTASCDPVFNRLYFEEKKNYKI----PVTVPDLNAKTFW---------------- 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                       +  A+E+D    I   + RQK +DQ+ S NLY  +    K L  ++  
Sbjct: 683 -----------FYENAYEVDQKMSIRQNAARQKHVDQSLSFNLYVYNTIKAKDLLDLHLT 731

Query: 892 AWLMGLKTTYYLRSRSATSVE 912
           AW   LK+TYY+RS + T  E
Sbjct: 732 AWKERLKSTYYVRSTAVTIEE 752


>gi|323692022|ref|ZP_08106270.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503945|gb|EGB19759.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 764

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/800 (30%), Positives = 377/800 (47%), Gaps = 104/800 (13%)

Query: 152 GTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDLETA 201
           G+ +S  + + L   + E    L+++         S +++  +    +   +   +  + 
Sbjct: 14  GSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEALSL 73

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  KE P++  + A  LL + R           ++   H +   Y +      
Sbjct: 74  LIQAAAELTRKEAPDWEYIAAYLLLVRFR-------INLREEDKKHGIGSFY-DRIRYLT 125

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
            E +    + E     +L      +  +RD  F Y GL +L  RY +    +  +E PQ 
Sbjct: 126 RENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQE 185

Query: 320 FFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +++ LA+KE  ++ K    FY++LS+     +TPTL N+   + QLSSCF+ TVPD
Sbjct: 186 MFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 245

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV
Sbjct: 246 SLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVAV 305

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  +
Sbjct: 306 DQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAID 365

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           + W L  P E+       L D YG+E+E  Y +  +     E    R +    + R +L 
Sbjct: 366 SDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRLILK 421

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593
              ETG P+   +D  N  +P +H G+++ SNLCTEI  N S                  
Sbjct: 422 SAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGETVV 481

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL S++L      N  D  +L   +R AVR LDNVID+N   +  AK 
Sbjct: 482 VTVTKPGDFVVCNLASLSLGKI---NVSDRSELTFLVRCAVRALDNVIDLNFFPVPYAKI 538

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+G Y
Sbjct: 539 NNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKGCY 598

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W  G +                M       W  L+++   +G+RN   +A AP
Sbjct: 599 EYFPGSGWQTGSY--------------FEMRGYCSDEWRRLREKAAAVGLRNGWLIAAAP 644

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP     Y++   +G    V   L      R               
Sbjct: 645 TSSTSMISGTTAGLDPIMNRFYLEEKKNGLVPRVAPELTPSTYWR--------------- 689

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           +  A  ID  W + +A  RQ+ IDQAQS+NLY  +  + +++  
Sbjct: 690 ----------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQVLE 733

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 734 LYLLAWKSGVKTIYYIRSKS 753


>gi|218249009|ref|YP_002374380.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 8801]
 gi|218169487|gb|ACK68224.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8801]
          Length = 769

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/822 (27%), Positives = 378/822 (45%), Gaps = 97/822 (11%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                 S     PK++++  D +    N  ++  +V  AC G  +V+   + +     + 
Sbjct: 19  HSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLR 77

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHH 246
            G++  +++  LI  +  +    EPN+  V  R  +  L ++ L      Y   +K  H 
Sbjct: 78  HGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEKTVHT 137

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           +++    EY  R +           +    +L    + +  + D  ++Y G  +L  RY 
Sbjct: 138 KVEA--QEYDSRLL-----------TYSSEELREAGSWINPDWDTDYDYAGAVLLTSRYL 184

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L       E+PQ   +  ++ LA  E+ + +   A +FY  +++     +TP L N    
Sbjct: 185 LPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKISLATPILANLRVP 239

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
              L+SCF+ ++ D L  IF  +   A ++K  GG+G + + +R  G+ +      S G+
Sbjct: 240 GGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGI 299

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     
Sbjct: 300 IPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQVI 359

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +PD FM+RV   + WTL  P EV      +L +L+G++FE AY   ER+  +    ++++
Sbjct: 360 LPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEEAYGLIERELGQKIT-LYKR 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-ETA 598
           I A  L++ ++    ETG P++ FKD  N  +P +H G +   NLCTE   N S   E  
Sbjct: 419 IQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAH 478

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+NL    A+      +L S  R AVR+LDN IDI  +  E AK  N+ +R IG+
Sbjct: 479 SCNLVSLNLANLEAS------ELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGI 532

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G MG    L    + Y S   +   ++  E   +    AS+ELA+ER  Y +F+GS W Q
Sbjct: 533 GCMGLADWLAKNRLSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQ 589

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G        + A+  D    N T +  W +L + +K  G+RNS+  AIAP  + + + G 
Sbjct: 590 GKL------IGAKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGC 643

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P Y   +      G   +   F+                                
Sbjct: 644 TASILPVYSRFFYDKWAKGTVPIAPPFI-------------------------------- 671

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKL 885
           D+    +     +D   ++++ +  Q+W+D   S+ L         + DEP    + K +
Sbjct: 672 DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDI 731

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
                 AW  G K  YY+R+     V+K   K  DG   A  
Sbjct: 732 FDTLVLAWQSGCKAVYYVRT-----VQKDDFKESDGGCTACA 768


>gi|323486977|ref|ZP_08092291.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
 gi|323399689|gb|EGA92073.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
          Length = 764

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/800 (30%), Positives = 377/800 (47%), Gaps = 104/800 (13%)

Query: 152 GTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDLETA 201
           G+ +S  + + L   + E    L+++         S +++  +    +   +   +  + 
Sbjct: 14  GSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEALSL 73

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  KE P++  + A  LL + R           ++   H +   Y +      
Sbjct: 74  LIQAAAELTRKEAPDWEYIAAYLLLVRFR-------INLREEDKKHGIGSFY-DRIRYLT 125

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQA 319
            E +    + E     +L      +  +RD  F Y GL +L  RY +    +  +E PQ 
Sbjct: 126 RENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLESPQE 185

Query: 320 FFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +++ LA+KE  ++ K    FY++LS+     +TPTL N+   + QLSSCF+ TVPD
Sbjct: 186 MFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 245

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV
Sbjct: 246 SLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTAVAV 305

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--N 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  +
Sbjct: 306 DQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADEAID 365

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           + W L  P E+       L D YG+E+E  Y +  +     E    R +    + R +L 
Sbjct: 366 SDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRLILK 421

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593
              ETG P+   +D  N  +P +H G+++ SNLCTEI  N S                  
Sbjct: 422 SAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGETVV 481

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL S++L      N  D  +L   +R AVR LDNVID+N   +  AK 
Sbjct: 482 VTVTKPGDFVVCNLASLSLGKI---NVSDRSELTFLVRCAVRALDNVIDLNFFPVPYAKI 538

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+G Y
Sbjct: 539 NNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEKGCY 598

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W  G +                M       W  L+++   +G+RN   +A AP
Sbjct: 599 EYFPGSGWQTGSY--------------FEMRGYCSDEWRRLREKAAAVGLRNGWLIAAAP 644

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP     Y++   +G    V   L      R               
Sbjct: 645 TSSTSMISGTTAGLDPIMNRFYLEEKKTGLVPRVAPELTPSTYWR--------------- 689

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           +  A  ID  W + +A  RQ+ IDQAQS+NLY  +  + +++  
Sbjct: 690 ----------------YKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQVLE 733

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RS+S
Sbjct: 734 LYLLAWKSGVKTIYYIRSKS 753


>gi|295706970|ref|YP_003600045.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium DSM 319]
 gi|294804629|gb|ADF41695.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium DSM 319]
          Length = 747

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/795 (30%), Positives = 382/795 (48%), Gaps = 87/795 (10%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
           TL       L   +E        +   +   +  + +   + +++  +   LI ++   I
Sbjct: 4   TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V A   L +L R+         +     E    + +      + G+  + L
Sbjct: 64  SMEEPDWTYVAADVYLNELYRKAGDN-----RGYDKKEKYGSFYQLIQELTKIGIYNKQL 118

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGL 328
            ++  + ++  +A+ +  ERD  F Y+GL  L DRY    +  R  E+PQ  F+ +AM L
Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178

Query: 329 ALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
             +E ++ + A   E Y  LSS +   +TPTL N+G  + QLSSCF+ T+ D L GI+ +
Sbjct: 179 MSQEKKESRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K  GG+G     +R  G+ I G  G S G IP++K  N+TAV+V+Q G+R+G
Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+  YL+ WH D+  FLD R N GD+R+RTHD+ T   +PDLFM++V     W LF P E
Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358

Query: 507 V-----SDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           V       L D Y +E    ++     +    E      + A+ ++++++    ETG P+
Sbjct: 359 VRTLMGYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETGTPY 418

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCN 601
           + ++D  N  +  +H G+++ SNLCTEIT N S                     +  VCN
Sbjct: 419 MFYRDTVNRANQNRHEGMIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFVVCN 478

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L SINL           D L   I   VR+LDNVI++N   + +AK +N  +RA+GLG  
Sbjct: 479 LSSINLARAVTE-----DVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGLGTF 533

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G+   L L  I + + EAV   DE  E I++  + AS+ LA+E+GAY  FKGS ++ G +
Sbjct: 534 GWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFESGAY 593

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                             + +   W EL+  V++ G+RN   MA+AP ++ + I G + S
Sbjct: 594 --------------FETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGSTAS 639

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           IDP ++  Y +   +    V    L                                   
Sbjct: 640 IDPIFRKFYSEEKKNYKIPVTAPDLSPA-------------------------------T 668

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTT 900
              + + + ID  W I+  ++RQ+ IDQ+ S NLY+      K+L  ++  AW   LKTT
Sbjct: 669 NWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMAAWKEKLKTT 728

Query: 901 YYLRSRSATSVEKST 915
           YY+RS S+  +E+  
Sbjct: 729 YYVRSTSSEVIEECE 743


>gi|190574753|ref|YP_001972598.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia K279a]
 gi|190012675|emb|CAQ46303.1| putative ribonucleoside-diphosphate reductase 2 alpha chain
           [Stenotrophomonas maltophilia K279a]
          Length = 828

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/793 (31%), Positives = 371/793 (46%), Gaps = 90/793 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
             + F ++RL+  ++   +     DVS    + +        +S  DL   LI  + + +
Sbjct: 77  RRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRV 136

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P + +  AR  L +L +           +   +++   Y  Y        + G+ +
Sbjct: 137 DLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESLADRGIYS 188

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVA 325
             +       +L      +  ERD  F Y GL +L  RY          E+PQ  ++ +A
Sbjct: 189 NDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLTIA 248

Query: 326 MGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           + L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L G
Sbjct: 249 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQG 308

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q G
Sbjct: 309 IYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQLG 368

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V + A W LF
Sbjct: 369 QRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWYLF 428

Query: 503 SPDEVSDLHDLYGKEFEI------AYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            P EV      Y ++F        ++     +    E    R + A+ L+++++    ET
Sbjct: 429 DPHEVKQAKGWYLQDFYDEKRGAGSFRLRYAELVADERISRRTVKAIDLFKRIMLSQLET 488

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------------EET 597
           G+P++ ++D  N R+P +H G+++SSNLCTEI  N S                     + 
Sbjct: 489 GNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVTTRRAGDF 548

Query: 598 AVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A  +N  +RA
Sbjct: 549 VVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATITNRKYRA 608

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L    I + SP+A E+AD   E I+F  I AS +LA+E+G+Y  F GS 
Sbjct: 609 IGLGTFGWHHLLAQQAIQWESPDAEELADRLYERINFLTIQASAQLAKEKGSYPMFAGSD 668

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 S   WD L + V T G+RN   +A+AP  + A I
Sbjct: 669 WHNGRYFRD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAPNMSTAQI 714

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP Y   Y +        V    L  E                          
Sbjct: 715 AGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLET------------------------- 749

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWL 894
                       A+++D    +   +RRQ+ +DQ+ S NLY+        L  ++  AW 
Sbjct: 750 -----WPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLLELHLSAWR 804

Query: 895 MGLKTTYYLRSRS 907
            GLKTTYY+RS  
Sbjct: 805 EGLKTTYYVRSND 817


>gi|307596370|ref|YP_003902687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
 gi|307551571|gb|ADN51636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
          Length = 895

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/835 (26%), Positives = 383/835 (45%), Gaps = 71/835 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G    F+  +L   ++     L  V    ++     ++   +S S+L   +  
Sbjct: 14  IKVLKRNGNTEDFSRDKLVRSLK-----LAGVPDPDLVISAL-DLRGTVSSSELSDKVQL 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
               ++  +  +      +LL  + ++V      K       + +  Y E F  +   G+
Sbjct: 68  IMLNMVTDDLKWHDAARNYLLWSVYKQVWGKDVVKAINEGRVKFEDAYREGFKAWFRTGL 127

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           + R+            +  LA  L   RD    Y G++ L  RY L  ++GS  E+PQ  
Sbjct: 128 ELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEVPQYL 187

Query: 321 FMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           +MR AMG+A  E     +       FY+L+S   FM ++PTL+N+ TR  QLS+CF+  +
Sbjct: 188 WMRTAMGVAYAELRYGGDPITWTRRFYDLMSQLRFMPNSPTLYNAMTRLGQLSACFVVPI 247

Query: 377 PDDLY--------------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            D L               GI  AL+  A++ +  GG+G ++  +R  G  +  T G + 
Sbjct: 248 DDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIAS 307

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+K+ +     + QGGKR+GA    L  WH D+E+F+  +     D  +  + N +
Sbjct: 308 GPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGELKD-IQLQNFNIS 366

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I D FM++  +     L +P E   L+  +G+EF   YE        G+++++R+++A
Sbjct: 367 VTIDDYFMQKALKGEDIYLINPRECPCLYKTWGEEFVKCYEGCVEAIKAGKVRIWRRVNA 426

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCN 601
             LW K++   +++G P +  +D  N  + ++  G V++++N C+E +L         CN
Sbjct: 427 KELWDKIVKSAWDSGDPGLWNRDLANYINNEKLPGEVINATNPCSEESLYDFES----CN 482

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL+ +    + D+D LA  ++ AVR LD+VID+N    E+ +K     R IGLG  
Sbjct: 483 LGSINLVKYVHEGRIDWDSLARDVQLAVRFLDDVIDVNKLPHERLRKRVLETRRIGLGAN 542

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L  L + Y SP+A+ +++E   FI+  A+ AS+ELA+E+G Y ++K S W +GV 
Sbjct: 543 GLADTLIALGLRYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEGVL 602

Query: 722 PI----DSIGLLAEVRDELAMNRT--------------------------SRLPWDELKK 751
           P     + +   +   D+ A++                             R    +L  
Sbjct: 603 PWTKHRERLEKFSSTIDKEAVDEYMKTLDVGYNDPKVRAIIDGSTAVLKGYRALDSDLSI 662

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V T+G+RN + M+IAP  + + I GV+ SI+P +   Y+++   G     N   +  L 
Sbjct: 663 DVSTVGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALRLLM 722

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           Q    DE+    ++ +     +       L  +  TA EI   W +       +W D   
Sbjct: 723 QTKTLDESTRRFVEEYGILPRDHP-----LADLLRTAHEIHWKWHVYMQVTWARWNDSGV 777

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLN 924
           S  + +   +  + ++  YR AWL+        R +S +  V  + +KG + K  
Sbjct: 778 SKTINMPSDTPMEDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAKPT 832


>gi|254524235|ref|ZP_05136290.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721826|gb|EED40351.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 787

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/793 (31%), Positives = 374/793 (47%), Gaps = 90/793 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
             + F+++RL+  ++   +     DVS    + +        LS  DL   LI  + + +
Sbjct: 36  RRLPFDAERLQRSIDTVHAEFPQLDVSDYRRVVQAMVERKPSLSADDLVDLLIREAESRV 95

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P + +  AR  L +L +           +   +++   Y  Y        + G+ +
Sbjct: 96  DLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVSLKYGSYVGLQESLADRGIYS 147

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVA 325
             +       +L      ++ ERD  F Y GL +L  RY          E+PQ  ++ +A
Sbjct: 148 NDILRCYSKEELQQAGEMIEPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLTIA 207

Query: 326 MGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           + L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L G
Sbjct: 208 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQG 267

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q G
Sbjct: 268 IYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQLG 327

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGAV  YL+ WH D+E FLDLR N GD R R HD+ T+  +PDLFM+ V + A W LF
Sbjct: 328 QRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWYLF 387

Query: 503 SPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            P EV      Y ++F        ++ +   +    E    R + A+ L+++++    ET
Sbjct: 388 DPHEVKSAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRIMLSQLET 447

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------------EET 597
           G+P++ ++D  N ++P +H G+V+SSNLCTEI  N S                     + 
Sbjct: 448 GNPFLFYRDEVNRKNPNKHAGMVYSSNLCTEILQNMSPTRMIQEIVSGDQIVTTRRAGDF 507

Query: 598 AVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A  +N  +RA
Sbjct: 508 VVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATITNRKYRA 567

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L    I + SP+A ++AD   E I+F  I AS +LA+E+G+Y  F GS 
Sbjct: 568 IGLGTFGWHHLLAQQAIQWESPDAEQLADRLYERINFLTIQASAQLAKEKGSYPMFAGSD 627

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 S   WD L + V T G+RN   +A+AP  + A I
Sbjct: 628 WHNGRYFSD--------------RGYSGADWDSLAREVATHGLRNGWLLAVAPNMSTAQI 673

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP Y   Y +        V    L  E                          
Sbjct: 674 AGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLET------------------------- 708

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWL 894
                       A+++D    +   +RRQ+ +DQ+ S NLY+        L  ++  AW 
Sbjct: 709 -----WPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLLELHLSAWR 763

Query: 895 MGLKTTYYLRSRS 907
            GLKTTYY+RS  
Sbjct: 764 EGLKTTYYVRSND 776


>gi|194366072|ref|YP_002028682.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194348876|gb|ACF51999.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 787

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/793 (30%), Positives = 372/793 (46%), Gaps = 90/793 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
             + F ++RL+  ++   +     DVS    + +        +S  DL   LI  + + +
Sbjct: 36  RRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLIREAESRV 95

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P + +  AR  L +L +           +   +++   Y  Y        + G+ +
Sbjct: 96  DLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESLADRGIYS 147

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVA 325
             +       +L      +  ERD  F Y GL +L  RY          E+PQ  ++ +A
Sbjct: 148 NDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQERWLTIA 207

Query: 326 MGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           + L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L G
Sbjct: 208 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQG 267

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q G
Sbjct: 268 IYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTAVSVDQLG 327

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V + A W LF
Sbjct: 328 QRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVERRADWYLF 387

Query: 503 SPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            P EV      Y ++F        ++ +   +    E    R + A+ L+++++    ET
Sbjct: 388 DPHEVKQAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRIMLSQLET 447

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------------EET 597
           G+P++ ++D  N R+P +H G+++SSNLCTEI  N S                     + 
Sbjct: 448 GNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVTTRRAGDF 507

Query: 598 AVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            VCNL SINL    +  ++    D L   I   VR+LDNVID+N   + +A  +NH +RA
Sbjct: 508 VVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATITNHKYRA 567

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L    I + S +A ++AD   E I+F  I AS +LA+E+G+Y  F GS 
Sbjct: 568 IGLGTFGWHHLLAQQSIQWESQDAEQLADRLYERINFLTIQASAQLAKEKGSYPMFAGSD 627

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 S   WD L + V T G+RN   +A+AP  + A I
Sbjct: 628 WHNGRYFSD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAPNMSTAQI 673

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP Y   Y +        V    L  E                          
Sbjct: 674 AGSTASIDPIYSAFYYEEKKDFRRPVAAPGLSLET------------------------- 708

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWL 894
                       A+++D    +   +RRQ+ +DQ+ S NLY+        L  ++  AW 
Sbjct: 709 -----WPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLLELHLSAWR 763

Query: 895 MGLKTTYYLRSRS 907
            GLKTTYY+RS  
Sbjct: 764 EGLKTTYYVRSND 776


>gi|332971064|gb|EGK10034.1| ribonucleotide-diphosphate reductase alpha subunit [Desmospora sp.
           8437]
          Length = 749

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/783 (30%), Positives = 369/783 (47%), Gaps = 86/783 (10%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
             I  + + LE  +++  S    +     +++   +  +  S   +   +I  +   +  
Sbjct: 10  ETIPRDRQALEGFLQQLMSDFPRLDLHEYVAQQLHSFREEDSVDRIADRMILDALERVSG 69

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           +EP++  V +R  L +L  E     +++ +          + E      E GV + LL E
Sbjct: 70  EEPDWTFVASRIYLLRLYEEASRHPFRQGKPYGD------FYELIRGLTESGVYSPLLLE 123

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL 330
           +    ++  LA  ++ ERD  F Y GL+ L DRY      G   E+PQ  F+ +AM L  
Sbjct: 124 TYTRAEIGELAMMIRPERDHLFTYAGLRTLADRYLARSREGELYELPQERFLVIAMVLMS 183

Query: 331 KETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +E  + +     E Y  LS+ +   +TPTL N+G    QLSSCF+  V D L GI+ +  
Sbjct: 184 REERERRLHWVREAYWALSNLYMTVATPTLSNAGKDFGQLSSCFVDVVDDSLQGIYDSNT 243

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A ++K  GGLG     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G+RKG++
Sbjct: 244 DVARVSKGGGGLGVYLGKIRSRGSDIKGYKGISSGVIPWMKQLNNTAVSVDQLGQRKGSI 303

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM+ V     W LF P ++ 
Sbjct: 304 AVYLDIWHQDILSFLDAKLNNGDERLRTHDLFTGVCIPDLFMEAVEAREDWHLFDPHQIR 363

Query: 509 DLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            +     ++F      E ++                 + A+ L ++++    ETG P++ 
Sbjct: 364 RVMGWSLEDFYDEKRGEGSFREKYAACVEHPELDRTTVPAIELMKRIMVSQLETGTPYMF 423

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLG 603
           ++D  N ++P  H G+++ SNLCTEI  N S                     +  VCNL 
Sbjct: 424 YRDEANRKNPNHHAGLIYCSNLCTEIMQNMSPTLLREERVEEGKILITKEPGDFVVCNLS 483

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL     +       L   I   VR+LDNVID+N   + +A+ +N  +RAIGLG  G+
Sbjct: 484 SINLGRAVPDGV-----LKRLIPVQVRMLDNVIDLNTIEVPQARITNQKYRAIGLGTFGW 538

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L +  I + S EAV   +E    I++  I AS+ELA+E+G Y  F GS W  G +  
Sbjct: 539 HHLLAVKGIRWESEEAVRFGEELYGEIAYLTIRASMELAREKGPYPLFAGSDWQTGAY-- 596

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                                PW  L + V+  G+RN+  MA+AP A+ + I G + SID
Sbjct: 597 ------------FEKRGLREEPWHSLAEDVRHHGLRNAWLMAVAPNASTSLIAGSTASID 644

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P ++  Y +   +    V    L  E                                  
Sbjct: 645 PVFRREYSEEKKNYKIPVTAPDLTPE-------------------------------TGW 673

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A EID  W +  A+ RQ++IDQ+QSLNLY   +   + L  ++  AW  GLKTTYY
Sbjct: 674 YYKPAHEIDQRWSLRQAAARQRYIDQSQSLNLYVRHDIKARDLLDLHLTAWKSGLKTTYY 733

Query: 903 LRS 905
           LRS
Sbjct: 734 LRS 736


>gi|257062092|ref|YP_003139980.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 8802]
 gi|256592258|gb|ACV03145.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8802]
          Length = 769

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/822 (27%), Positives = 378/822 (45%), Gaps = 97/822 (11%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                 S     PK++++  D +    N  ++  +V  AC G  +V+   + +     + 
Sbjct: 19  HSHPHHSVPLATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLR 77

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHH 246
            G++  +++  LI  +  +    EPN+  V  R  +  L ++ L      Y   +K  H 
Sbjct: 78  HGITTREIQDNLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTLVSRGYQYGNYEKTVHT 137

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           +++    EY  R +           +    +L    + +  + D  ++Y G  +L  RY 
Sbjct: 138 KVEA--QEYDSRLL-----------TYSSEELREAGSWINPDWDTDYDYAGAVLLTSRYL 184

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L       E+PQ   +  ++ LA  E+ + +   A +FY  +++     +TP L N    
Sbjct: 185 LPN-----ELPQEALLSCSLLLATVESPENRLLWARQFYEAIATRKVSLATPILANLRVP 239

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
              L+SCF+ ++ D L  IF  +   A ++K  GG+G + + +R  G+ +      S G+
Sbjct: 240 GGSLTSCFIVSIDDSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGI 299

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     
Sbjct: 300 IPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLI 359

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +PD FM+RV   + WTL  P EV      +L +L+G++FE AY   ER+  +    ++++
Sbjct: 360 LPDEFMRRVINKSEWTLVDPYEVRTKLGIELAELWGEKFEQAYGLIERELGQKIT-LYKR 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-ETA 598
           I A  L++ ++    ETG P++ FKD  N  +P +H G +   NLCTE   N S   E  
Sbjct: 419 IQARDLFKTIMRSQVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAH 478

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+NL    A+      +L S  R AVR+LDN IDI  +  E AK  N+ +R IG+
Sbjct: 479 SCNLVSLNLANLEAS------ELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGI 532

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G MG    L    + Y S   +   ++  E   +    AS+ELA+ER  Y +F+GS W Q
Sbjct: 533 GCMGLADWLAKNRLSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQ 589

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G        + A+  D    N T +  W +L + +K  G+RNS+  AIAP  + + + G 
Sbjct: 590 GKL------IGAKSVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGC 643

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P Y   +      G   +   F+                                
Sbjct: 644 TASILPVYSRFFYDKWAKGTVPIAPPFI-------------------------------- 671

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKL 885
           D+    +     +D   ++++ +  Q+W+D   S+ L         + DEP    + K +
Sbjct: 672 DESFWFYPENKTLDQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDI 731

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
                 AW  G K  YY+R+     V+K   K  DG   A  
Sbjct: 732 FDTLVLAWQSGCKAVYYVRT-----VQKDDFKESDGGCTACA 768


>gi|159030367|emb|CAO91262.1| nrdA [Microcystis aeruginosa PCC 7806]
          Length = 770

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/805 (27%), Positives = 372/805 (46%), Gaps = 91/805 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +   +EP++  V  R  +  L ++ L                  Y +     ++  
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VVRGYQYGNYEKTVKTQVKNR 143

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           +    +     + +L    + +  + D  ++Y G  ++  RY L       E+PQ   + 
Sbjct: 144 LYDERILIY-SEAELKEAGSWINPDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ D L 
Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AVNQG
Sbjct: 258 SIFSEITNAARISKNGGGVGVNVSRIRSTGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A WTL
Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVITKAEWTL 377

Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV      +L +L+G+EFE AY   E      E+ +++KI+A  L++ ++    ET
Sbjct: 378 VDPYEVRTKLGIELAELWGEEFEEAYRLVEANL-DKEVLLYKKINARDLFKSIMRSQVET 436

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFANNQ 615
           G P+I FKD  N  +P +H G + S NLCTE   N + ++TA  CNL S+NL        
Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPSVNLCTESFSNVTPDKTAHCCNLVSLNLAN------ 490

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    + Y 
Sbjct: 491 IDKEEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +           E I +    +S+ELA+ERGAY +F GS W QG        + A+  + 
Sbjct: 551 N---RSEISNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPLEW 601

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              N      W +L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +     
Sbjct: 602 FLTNAVQPQRWQQLAEDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G   +   F+         W                            +     ++   
Sbjct: 662 KGTVPIAPPFIEEA-----FW---------------------------FYPENKNLEQQQ 689

Query: 856 LIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYY 902
           ++++ +  Q+WID   S+ L         +  EP    + K +      AW +G K  YY
Sbjct: 690 VVKAIAAMQEWIDTGISMELLFNLNEGVYFPAEPNRCLTAKDIFDTLIMAWELGCKAIYY 749

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVP 927
           +R+     V+K   +  D   ++  
Sbjct: 750 VRT-----VQKDNFRESDDSCSSCA 769


>gi|285016982|ref|YP_003374693.1| ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472200|emb|CBA14707.1| probable ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans]
          Length = 803

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 244/822 (29%), Positives = 380/822 (46%), Gaps = 92/822 (11%)

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDG--TLISFNSKRLEMIVEEACSGLQ--DVSSKIV 181
           + +    + S   +     +  ++ DG    ++F+  RL+  ++   +     DVS    
Sbjct: 23  AAIAQPTTASSEPSNDQRAVTWIVKDGGNRRMAFDRSRLQRTLDRIHAEFPQLDVSDYER 82

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKP 240
            +  +    + LS  ++   LI  + + ++   P +    AR  L++L +          
Sbjct: 83  KAFAFIEKKESLSADEMVDYLIREAESRVDIATPEWEYFAARLYLDRLYKRA-------- 134

Query: 241 QKATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
            K   ++    Y  Y        + GV +  + ++    +L      +  ERD  F Y G
Sbjct: 135 SKNRFYDAGEKYGSYVGLQESLADRGVYSINILKNYSKEELAEAGRMIDPERDKLFAYNG 194

Query: 298 LQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMC 353
           L +L  RY    N     E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   
Sbjct: 195 LYLLATRYLATDNSRKVYELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTV 254

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ 
Sbjct: 255 ATPTLSNAGKIGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSA 314

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G    S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R
Sbjct: 315 IRGVKNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQR 374

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF------EIAYENYER 527
            R HD+ TA  +PD+FM+ V +   W LF P EV ++   Y ++F      E ++     
Sbjct: 375 LRAHDVFTAVCVPDIFMEAVERRGEWYLFDPYEVKEVKGWYLQDFFDEKRGEGSFRAKYE 434

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +    E    + + A+ ++++++    ETG+P++ ++D  N  +P +H G+V+SSNLCTE
Sbjct: 435 EVVADERIGRKVVKAIDMFKRIMVSQLETGNPFMFYRDEVNRMNPNKHQGMVYSSNLCTE 494

Query: 588 ITLNSSS-------------------EETAVCNLGSINLLAHFAN--NQFDYDKLASTIR 626
           I  N S                     +  VCNL S+NL        +    D L   IR
Sbjct: 495 ILQNMSPTRVIQEMISGDQIVTTKQAGDFVVCNLSSVNLGRAVTAQPDLLSPDILERLIR 554

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + S +A + +D  
Sbjct: 555 VQVRMLDNVIDLNDLPVPQATITNQKYRAIGLGTFGWHHLLAQKGIEWNSRQAEDYSDTL 614

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E I++  I AS+ LAQE+GAY  FKGS W  G +                        W
Sbjct: 615 YERINYLTIQASLALAQEKGAYKVFKGSDWQNGEYFSK--------------RGYDSAQW 660

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        VV   L
Sbjct: 661 QELAAQVSVHGVRNAWMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVVAPGL 720

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                           D        A+++D    +   +RRQ+ 
Sbjct: 721 T------------------------------VDTYPYYEKGAYKVDQFASVRQNARRQRH 750

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 751 VDQSISFNFYVPSGIRAGTLLDLHMTAWKEGLKTTYYVRSND 792


>gi|254168705|ref|ZP_04875547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622331|gb|EDY34904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 229/895 (25%), Positives = 393/895 (43%), Gaps = 178/895 (19%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E+ + ++VIKR+G +  F   KI +AIMKA  ++ G G       ++  + +T + V 
Sbjct: 12  MSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYG-------EEDAQRVTRKVVE 64

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           ++ +       + +E IQD VE +LM  G+  + + Y+LYREER  +R A+         
Sbjct: 65  KIKESRV--ERITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKV------- 115

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                I + D   ++ N+ +    V EA   L+D +  +                     
Sbjct: 116 -----IGVQDDLKLTVNAIK----VLEARYLLKDENGNV--------------------- 145

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLR------REVLTTVYKKPQKATHHEMQCLYPEY 255
            I + R + E+   Y  +   F  + +       +E    V +KP+  +  E   L    
Sbjct: 146 -IETPRQMFERTARYLALVDIFYEDDIYDKEGKQKERKIDVEEKPEFLSIWEFNML-KRA 203

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  + +EG          M  D  Y+ + LK + D                      +IE
Sbjct: 204 FTYFSKEGY---------MKVDFSYVLDSLKSKWD----------------------KIE 232

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             +  F                       ++    ++ ++PTL N+ T+  QLS+CF+  
Sbjct: 233 RVKNKFA---------------------EVMLHRKYVPNSPTLMNANTKLGQLSACFVLP 271

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +   
Sbjct: 272 VPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVAT 331

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM  + +
Sbjct: 332 DVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLR 388

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  + L +P    ++                           ++I A  +W  ++T  ++
Sbjct: 389 DDYYPLRNPRNGEEV---------------------------KRIKARQVWDLIITQAWK 421

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P + F D  N + P +H+G + S+N C E  L         CNLGSINL     N +
Sbjct: 422 TGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGK 477

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY 
Sbjct: 478 IKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYD 537

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W                   
Sbjct: 538 SEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW------------------- 578

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W       K + +RN+    IAPT TI+ I G S SI+P +   +++  +
Sbjct: 579 ----------WK------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVL 622

Query: 796 SG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            G +   VN      +K+  L+ E ++       GS+ +I+ +P+++K++  TA +IDP+
Sbjct: 623 DGQELLEVNPLFEEIMKREGLYSEELM-HKVAETGSVQHIDDVPENIKRLFRTAHDIDPV 681

Query: 855 WLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           W +   +  QK++D A S  +    + S   ++  Y  AW +  K     R  S 
Sbjct: 682 WHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSK 736


>gi|289596835|ref|YP_003483531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534622|gb|ADD08969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 785

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 229/895 (25%), Positives = 393/895 (43%), Gaps = 178/895 (19%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E+ + ++VIKR+G +  F   KI +AIMKA  ++ G G       ++  + +T + V 
Sbjct: 1   MSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYG-------EEDAQRVTRKVVE 53

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           ++ +       + +E IQD VE +LM  G+  + + Y+LYREER  +R A+         
Sbjct: 54  KIKESRV--ERITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKV------- 104

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                I + D   ++ N+ +    V EA   L+D +  +                     
Sbjct: 105 -----IGVQDDLKLTVNAIK----VLEARYLLKDENGNV--------------------- 134

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLR------REVLTTVYKKPQKATHHEMQCLYPEY 255
            I + R + E+   Y  +   F  + +       +E    V +KP+  +  E   L    
Sbjct: 135 -IETPRQMFERTARYLALVDIFYEDDIYDKEGKQKERKIDVEEKPEFLSIWEFNML-KRA 192

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  + +EG          M  D  Y+ + LK + D                      +IE
Sbjct: 193 FTYFSKEGY---------MKVDFSYVLDSLKSKWD----------------------KIE 221

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             +  F                       ++    ++ ++PTL N+ T+  QLS+CF+  
Sbjct: 222 RVKNKFA---------------------EVMLHRKYVPNSPTLMNANTKLGQLSACFVLP 260

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +   
Sbjct: 261 VPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVAT 320

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM  + +
Sbjct: 321 DVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLR 377

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  + L +P    ++                           ++I A  +W  ++T  ++
Sbjct: 378 DDYYPLRNPRNGEEV---------------------------KRIKARQVWDLIITQAWK 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P + F D  N + P +H+G + S+N C E  L         CNLGSINL     N +
Sbjct: 411 TGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGK 466

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY 
Sbjct: 467 IKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYD 526

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W                   
Sbjct: 527 SEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW------------------- 567

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W       K + +RN+    IAPT TI+ I G S SI+P +   +++  +
Sbjct: 568 ----------WK------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVL 611

Query: 796 SG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            G +   VN      +K+  L+ E ++       GS+ +I+ +P+++K++  TA +IDP+
Sbjct: 612 DGQELLEVNPLFEEIMKREGLYSEELM-HKVAETGSVQHIDDVPENIKRLFRTAHDIDPV 670

Query: 855 WLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           W +   +  QK++D A S  +    + S   ++  Y  AW +  K     R  S 
Sbjct: 671 WHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSK 725


>gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca]
          Length = 500

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 195/513 (38%), Positives = 296/513 (57%), Gaps = 18/513 (3%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  
Sbjct: 1   RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L +++G+EFE  YE+YE+Q       V + + A  LW  ++    ETG P++ +
Sbjct: 61  PNECPGLDEVWGEEFEKLYESYEKQGR-----VRKVVKAQQLWYAIIESQTETGTPYMLY 115

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLA 622
           KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D+ KLA
Sbjct: 116 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLA 175

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +
Sbjct: 176 EVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 235

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +            T 
Sbjct: 236 NKQIFETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTP----------TD 285

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +V
Sbjct: 286 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 345

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ 
Sbjct: 346 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 405

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVD 920
           R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL K   
Sbjct: 406 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKL 465

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                    +     ++  +  S  +  EC +C
Sbjct: 466 KDKEKATKEEEEKERNTAAMVCSLENREECLMC 498


>gi|225386406|ref|ZP_03756170.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
 gi|225047487|gb|EEG57733.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
          Length = 761

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/772 (31%), Positives = 374/772 (48%), Gaps = 96/772 (12%)

Query: 180 IVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVY 237
            +LS  +++    G+  ++L  +LI S+  L  +E P +  + AR    +   E+     
Sbjct: 47  EILSNKFRSFRKPGMKRTELYDSLIQSAAELTSREAPRWEFIAARIRYSQFGEEL----- 101

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
              ++     +   Y +       EG+    + E   + ++      L  ER+  F Y G
Sbjct: 102 --EERLAGLGISGFYDKLVY-LTREGLYGDYILEHYTEAEIREAETFLDPERNKLFTYSG 158

Query: 298 LQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMCS 354
           L +L  RY +  +    +E PQ  ++ +A+ LA++E    + A    FY++LS+     +
Sbjct: 159 LDLLIKRYVIQNHKRQPLETPQEMYLGIALHLAMEEKPDCRMAWVRRFYDMLSNMQVTMA 218

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTL N+     QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G  I
Sbjct: 219 TPTLSNARKPFHQLSSCFIDTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRATGGSI 278

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G  G + GVI ++K+ NDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR 
Sbjct: 279 RGFEGAAGGVIRWVKLVNDTAVAVDQLGMRQGAVAVYLDAWHKDLPEFLQLRTNNGDDRM 338

Query: 475 RTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYER 527
           + HD+  A   PDLF K   +  N  W L  P E+       L D +G+E+E  Y +   
Sbjct: 339 KAHDVFPAICYPDLFWKMAKEDLNQPWHLMCPHEILQVKGYSLEDSFGEEWERRYLDCVA 398

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +    R ++   + R +L    ETG P+   +D  N  +P  H G+++ SNLCTE
Sbjct: 399 DGRISK----RTVALKDIVRLILRSQVETGTPFTFNRDVVNRANPNGHKGMIYCSNLCTE 454

Query: 588 ITLN-----------------------SSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           I  N                       + + E  VCNL S+ L         D   + + 
Sbjct: 455 IAQNMAGIETVSTEIREENGDTVVVTTTKAGEFVVCNLASLCLGNIDVT---DEAAVRAV 511

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             +AVR LDNVI +N + +  AK +N  +R+IGLG+ G+   L    I + S E +  AD
Sbjct: 512 TASAVRALDNVIGLNFYPLPYAKITNRRYRSIGLGVSGYHHMLAKNGIAWESEEHLRFAD 571

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E  E I+F A+ AS +LA E+G+Y  F+GS W+ G +  D  G   E             
Sbjct: 572 EVFERINFAAVEASSDLAAEKGSYDYFEGSDWETGAYF-DKRGYTGEK------------ 618

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+++V   GMRN+  +A+APT++ + +CG +  +DP  +  +++         V  
Sbjct: 619 -WDGLRRKVARQGMRNAYLVAVAPTSSTSILCGTTAGVDPVMKRYFLEEKKHAILPRVAP 677

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
               EL  R  W                           ++  A  +D  W + +A  RQ
Sbjct: 678 ----ELTPRTYW---------------------------LYKEAHLVDQTWSVRAAGARQ 706

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + IDQAQS+NLY  +E + +++  +Y QAW  G+KT YY+RS++    E  +
Sbjct: 707 RHIDQAQSVNLYITNEYTMRQVLNLYIQAWEEGVKTIYYVRSKALEVEECES 758


>gi|229542077|ref|ZP_04431137.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
 gi|229326497|gb|EEN92172.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
          Length = 744

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 244/780 (31%), Positives = 376/780 (48%), Gaps = 92/780 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVT 220
           +  ++++  +GL+ + +     +  K      S  +    LI  +   I++    +    
Sbjct: 12  ILQLIDQMSAGLE-IETGAYKEKILKLWDQDASLVEKTDLLIKHALENIDEAGAAWTFFA 70

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFD 277
           AR  L KL  E          K  H++    Y  ++    + +E+G+ +  L +     +
Sbjct: 71  ARIYLHKLYAEAA--------KNRHYDPTLKYGSFYDLIRQLVEKGIYSPKLLDKYTKQE 122

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE-- 334
           +  L   +  E+D  F Y GL  L  RY          E+PQ  +M +AM L   E +  
Sbjct: 123 IETLGRLIDPEKDLLFTYPGLYTLVTRYLASDFEKHVYELPQERWMVIAMYLMQDEQQET 182

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           + +   E Y  LS+ +   +TPTL N+G  H QLSSCF+ TV D L  I+ +  + A L+
Sbjct: 183 RMEHVKEAYWALSNLYMTVATPTLANAGKTHGQLSSCFIDTVADSLQSIYDSNTDIAQLS 242

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G     +RG G+ I G  G S GV+P++K  N+TAV+V+Q G RKGA+  YL+ 
Sbjct: 243 KNGGGIGVYMGKIRGRGSAIKGFPGMSSGVVPWIKQLNNTAVSVDQLGTRKGAITVYLDV 302

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD----- 509
           WH D+E+FLDL+ N GDDR R  D+ T   IPD FM++V +   W +F P EV +     
Sbjct: 303 WHRDIEDFLDLKLNNGDDRLRARDIYTGVCIPDYFMEQVEKRGDWYVFDPHEVKEVMGFA 362

Query: 510 LHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           L D Y +E    ++          +++  RK+ A+ + ++++    ETG P++ ++D  N
Sbjct: 363 LEDFYDEEKGKGSWREKYEACIHADLRSKRKVPAIEIMKRIMRSQLETGAPFMFYRDEVN 422

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINLL 608
            ++P  H G+++ SNLCTEI  N S  E                      VCNL SINL 
Sbjct: 423 RQNPNSHKGIIYCSNLCTEIAQNQSPTELIEEWIKEENVIVKKYRSGDYVVCNLSSINLG 482

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +       L   IR  VR+LD+VID+N   I++ + +N  +RA+GLG  G+   L 
Sbjct: 483 KAVPDGV-----LERLIRIQVRMLDHVIDVNTLPIKQVQITNKKYRAVGLGTFGWHHLLA 537

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L  I + +  AVE AD+  E I+++AI +S+ELA+E+G+Y +F GS W  G +       
Sbjct: 538 LEGIEWETEAAVEYADKLYENIAYYAIKSSMELAREKGSYPAFPGSKWSTGAYFTGK--- 594

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                        +   W  L + VK  G+RN   MA+AP AT + I G + SIDP +Q 
Sbjct: 595 -----------GYTSERWLALAEEVKKYGLRNGYLMAVAPNATTSIIAGSTASIDPVFQP 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            Y++      F V       +L  R                                 +A
Sbjct: 644 YYMEEKKDYRFPVTAP----DLDHRTYNI--------------------------YRRSA 673

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRS 907
           +++D  W +   + RQK IDQ+ S N Y+      + L  ++ QAW  GLKTTYY+RS S
Sbjct: 674 YKLDQRWSVRQNAARQKHIDQSISFNFYVPYNIRAQVLLDLHLQAWKSGLKTTYYVRSTS 733


>gi|182419342|ref|ZP_02950594.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237666539|ref|ZP_04526524.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376673|gb|EDT74245.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237657738|gb|EEP55293.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 743

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/774 (30%), Positives = 376/774 (48%), Gaps = 91/774 (11%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT 235
           S   +L      + DG+SE  +  +LI  +  L    EPN+    ++    +L  EV   
Sbjct: 23  SENKLLEALNLIIRDGMSEKHIRKSLIQVALELTTDMEPNWQFAASKIYTYELYDEV--- 79

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
             +     +  ++   Y ++  +  + G+  + + ++    D++ L   +K ERDF F Y
Sbjct: 80  -RENRGLNSSEDLYKNYYDFISQLTDRGLYGKYILDNYTKEDILELEKTIKPERDFLFNY 138

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFM 352
            G+ +L  RY +   N + +E+PQ  FM +AM LA+ E + ++   A  FY++LSS    
Sbjct: 139 SGINLLSKRYLVQDYNRNPVELPQQMFMGIAMHLAIPEDKSKRVYWAKRFYDVLSSLKAT 198

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TPT+ N+     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR LG+
Sbjct: 199 MATPTMSNARKPFYQLSSCFIDTVEDSLEGIYKSLDNFAQVSKFGGGMGIYMGKVRALGS 258

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G S G+IP++K+ NDTAVAV+Q G R G+V  +L+ WH D+ EFL +R N GDD
Sbjct: 259 SIRGFKGASGGIIPWVKLFNDTAVAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDD 318

Query: 473 RRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD-----LHDLYGKEFEIAYENY 525
           R++ HD+      PDLF K    N  + W +  P E+ +     L D YG E+E   E Y
Sbjct: 319 RKKAHDVFPGLCYPDLFWKLAENNIDSDWYMMCPHEIKEIKGYSLEDFYGDEWE---EKY 375

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                  E    R +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLC
Sbjct: 376 YECV-NDERIEKRVMSVKDIVRLIIKSAAETGAPFAFYRDTVNKMNPNKHNGIIYSSNLC 434

Query: 586 TEITLNSSSEET-----------------------AVCNLGSINLLAHFANNQFDYDKLA 622
           TEI  N S  E                         VCNL S+ L      ++   +++ 
Sbjct: 435 TEIMQNMSPMEINKSEIINEDGSCIVTQNIIPGDFVVCNLSSVVLGNIDVCSE---EEVD 491

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +   +  + 
Sbjct: 492 YVVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNRIHWTEEKHKDF 551

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ADE  E I+++A+ AS+++A+E+GAY+ FK S WD G              D   +    
Sbjct: 552 ADEVYERINYYAVKASMKIAKEKGAYNLFKESDWDNG--------------DYFELRGYK 597

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+K +K  GMRN   +A+AP  + A I G S+ IDP     Y++          
Sbjct: 598 DEKWCALRKEIKENGMRNGYLLAVAPNGSTATIAGTSEGIDPVMARFYLEEKKGSIIPKT 657

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             + DD    +  A+ ID  W ++    
Sbjct: 658 AP-------------------------------NLNDDNYWYYNPAYNIDQAWSVQMNGI 686

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           RQ+ IDQ QS NLY  +  + +++  +Y +A   G+K+ YY+RS+S    E  +
Sbjct: 687 RQRHIDQGQSFNLYITNNYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTECES 740


>gi|167748342|ref|ZP_02420469.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
 gi|167652334|gb|EDR96463.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
          Length = 763

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/795 (29%), Positives = 381/795 (47%), Gaps = 97/795 (12%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSS 206
           +++      F    L   ++      Q+  S  +L+E +++   +G+ + +    L+ ++
Sbjct: 20  ILESFRTEEFPIGDLLKSIQN--EFPQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 77

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR  + +    V   + +   +  + ++  L         ++ + 
Sbjct: 78  AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVVLS--------QQNLY 129

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRV 324
              + ++  + ++   ++ ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +
Sbjct: 130 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 189

Query: 325 AMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM LA+KETE        FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 190 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 249

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G 
Sbjct: 250 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 309

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PD F ++   N    W L
Sbjct: 310 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGSWYL 369

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG E+   Y +        E    R I    + R ++    ET
Sbjct: 370 MCPHEILTVKGYALEDCYGTEWTEKYLDCVLD----ERISKRVIPIKDIVRMIIKSAAET 425

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N S                       
Sbjct: 426 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQIEQKIEMIGGEEVVVTVTK 485

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         DY++L+    +AVR LDNVID+N   +  A+ ++  +
Sbjct: 486 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+ G+   L    I + S E ++ A++    I + A++AS ++++E+G+Y  F G
Sbjct: 543 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 602

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                    ++  W  L+ R+K  G+RN   +A APT++ +
Sbjct: 603 SDWQTGDYFRK--------------RDLTKGRWKALEDRIKKHGLRNGYLLAAAPTSSTS 648

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++    G    V      EL     W                 
Sbjct: 649 IIAGTTAGLDPVMNRYFLEEKKYGLIPRVAP----ELSMETFW----------------- 687

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
                      +  A  ID  W +++   RQ+ IDQAQS+NLY  +E + +K+  +Y  A
Sbjct: 688 ----------YYKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILA 737

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY RS+S
Sbjct: 738 WEQGVKTIYYTRSKS 752


>gi|315425463|dbj|BAJ47126.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 834

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/930 (23%), Positives = 383/930 (41%), Gaps = 138/930 (14%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ 99
            FD  +I  AI KA  A       + +  + +++ +    + +L     +  I H+E+IQ
Sbjct: 2   DFDAERIRGAIRKAMAA-------KQVMDEKVLEKVVASVLEQLSSRFGAEKIPHVEEIQ 54

Query: 100 DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNS 159
           D VE +LM+ G  ++ + Y+LYR ER+ +R  +        +    K    +        
Sbjct: 55  DIVESALMEHGLKEVAKAYILYRHERTRIREEKMRILETGYVDEVDKAFSVN-------- 106

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
               + +  A   L+D S +                      LI   + + ++      +
Sbjct: 107 ---ALRLMAARYLLRDRSGR----------------------LIERPKQMFQRTAALIVL 141

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
               +L           + K  +    E   +  E +   I  G    +         L 
Sbjct: 142 AD--ILYN------PMFFDKSGQQKKWEEDDVKLEEYADNIGVGPSDNMHETKWNIHHLE 193

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR-----VAMGLALKETE 334
            LA                  LY R  L+  G          MR     V   L    + 
Sbjct: 194 RLA-----------------TLYKR--LNERG---------MMRKPLREVLEYLKSNPSR 225

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
             +    +Y+L+    F+ ++PTLFN+GT   QLS+CF+  V DD+  I    +E A++ 
Sbjct: 226 FYENYRRYYDLMVGKRFLPNSPTLFNAGTVLGQLSACFVLDVEDDISSIMRTAEEAAVIF 285

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T G + G + F+++ +     V QGG+R+GA    L  
Sbjct: 286 KTGGGVGINYSKLRPEGDVVSSTGGVASGPVSFMRIVDTVTDVVKQGGRRRGANIGILNI 345

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+++F+  ++  G       + N +  +   F K   ++  + L +P + S      
Sbjct: 346 NHPDIDKFISAKQRPG----FLENFNISVMVTADFWKHYEEDRPYPLVNPRDGS------ 395

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                                V+R +    L R++    ++T  P + + D  N  +P +
Sbjct: 396 ---------------------VWRLVDTRKLLRQIAENAWKTADPGLLYHDNINELNPLR 434

Query: 575 -HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
              G ++  N C E  L         CNLGSINL A   + + D+D L   +  AVR LD
Sbjct: 435 EAYGDIYCVNPCGEQPLYPHES----CNLGSINLHAFVKDGRLDWDALGKCVEDAVRFLD 490

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV+D+  H  E  +K     R IGLG+MG    L+ L IPY+S E  E+    ME+I++ 
Sbjct: 491 NVVDLTKHPTEAIEKMTLRTRRIGLGIMGLADMLYALRIPYSSEEGFEMMRRVMEYIAYK 550

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+  SVELA+ERG +  F  S W +G  P   +    E++          + W  L + V
Sbjct: 551 AVETSVELAEERGPFPDFPRSSWARGELPFRGLREGRELK----------MYWSRLVEHV 600

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+RNS+ + +APT +I+ +   S  ++P +  +Y K   +G F   +      L++ 
Sbjct: 601 KK-GIRNSHLLTVAPTGSISMLADTSSGLEPQFALVYRKQVTAGVFYYSDPVFEKALEEY 659

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L  + ++  +  + GS+  I+ IP+DL+++  TA +I     + +    QKW+D + S 
Sbjct: 660 GLPKQEIVRRVAENGGSVQGIQEIPEDLRRVFVTALDIPWWDHLRAQHEIQKWVDASVSK 719

Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLR--SRSATSVEKSTLKGVDGKLNAVPVTD 930
            + +    +   +   +  A  +GLK     R  S+SA  +   T +    +L+ +  T 
Sbjct: 720 TINMPSWVTVDDVLKAFIAAHRLGLKGVTVYRDGSKSAQVLVTPTQRNRRYELSVINNTP 779

Query: 931 P-------NSSTHSLGIPSSCTSDTECEVC 953
                            P      T C VC
Sbjct: 780 ELLRGLGIEVEEKIAETPPPAIIHTTCPVC 809


>gi|240102479|ref|YP_002958788.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
 gi|239910033|gb|ACS32924.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
          Length = 911

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/907 (23%), Positives = 375/907 (41%), Gaps = 123/907 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V            D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIRWAIKRAMLEVGVHD--------DKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +                 
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKI-------------- 102

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                   N  RL+ I +        V +   L    K              +I S R L
Sbjct: 103 -------LNKDRLDEIDKRFSLNALRVLASRYLIRNEKG------------EIIESPREL 143

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E+    A +                    P       +     ++              
Sbjct: 144 FERVATLAVI--------------------PDLLYDERVYDKNGKHEQDLSRVKYY---- 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E   +FD  Y     K  + + FE      L + Y       R+++    F+ +    A
Sbjct: 180 LEHFEEFDGRYSIGRFKLNK-YHFE-----RLVNLYRELAEKGRMKVSIDEFLGMLENGA 233

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
             + E E    E++ L++   FM +TP L NSG     LS+CF+  + DD+  I  A  +
Sbjct: 234 FDDYESE--VEEYFRLMTGQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHD 291

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA  
Sbjct: 292 VAMIQKSGGGTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGANM 351

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             LE WH D+E+F+  ++          + N +  I + F + +     + L +P     
Sbjct: 352 GILEVWHPDIEKFIHAKEKNIG-TNVLSNFNISVGIWEDFWEALRDGKRYPLVNPRTGE- 409

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                       ++I   +L+ ++  M +    P + F D  N 
Sbjct: 410 --------------------------KVKEIDPKSLFEELAFMAWSKADPGVIFFDVINR 443

Query: 570 RSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLA 622
           R+  +    G + ++N C E  L     E   CNL SINL      +      FD+D+ A
Sbjct: 444 RNVLEPAKGGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPYFDWDEYA 499

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E    
Sbjct: 500 YVIQKVAKYLDNAIDVNRFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFAF 559

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             ++ E+++F+A   SVE A++RG +  ++ S +  G  P++                  
Sbjct: 560 MRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSRYKDGELPVEG----------FYHREIW 609

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F  V
Sbjct: 610 NLPWDELVEEIKKHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYV 669

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           +     ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  +  I + + 
Sbjct: 670 DPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILAQAN 729

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    S       
Sbjct: 730 IQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRK 789

Query: 922 KLNAVPV 928
           ++ A P 
Sbjct: 790 RVPAKPS 796


>gi|61806368|ref|YP_214727.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563912|gb|AAX46967.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 768

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/831 (25%), Positives = 350/831 (42%), Gaps = 90/831 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  DG+    +  R+  IVE AC GL  VS   V   +    +DG+  SD++  L+
Sbjct: 5   EINVIKRDGSKAPLDLNRVHHIVEHACRGLAGVSESQVEISSGLQFFDGIKTSDIQEILV 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR++V            H +    + E+    I+ 
Sbjct: 65  RSANDLISLEAPNYQYVAARLLLFSLRKQVYGG---------HPDHPTEFVEHIQSCIDR 115

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
            +    + +   + ++  L   + ++RD+ F Y G++ + D+Y +     G   E PQ  
Sbjct: 116 NLYDGDILKKYTNDEITELGKYIDHDRDYLFTYAGIRQVVDKYLVQDRSTGEVFETPQFM 175

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   + +  + K   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 176 YMMIAATLFQDDDKFYRLKYVKKYYDAISKHKINIPTPIMGGVRTPLRQFASCVLVDVDD 235

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T    
Sbjct: 236 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFEATVRCC 295

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R  +++ 
Sbjct: 296 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSVQISGLFYQRFIEDST 355

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSP  V DL+D +G + F+  Y  YE      +    + + A  L   +L    ETG
Sbjct: 356 ITLFSPHNVPDLYDAFGTDAFDELYVKYENDNSIPK----KVVRAQELVLDLLKERAETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V  SNLC EITL ++         E A+C L +IN+   
Sbjct: 412 RLYIMNIDHCNSHSSFK--DKVSMSNLCQEITLPTTPLQHIDGSGEIALCILSAINVGKL 469

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+L      AVR LD +ID   + +  A++S    R++G+G +G    L   
Sbjct: 470 TK-----LDELDDLCELAVRGLDALIDYQQYPVTAAEQSTKNRRSLGIGYIGLAHYLAKN 524

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   F  +SAS +LA E+G    F  + +  G+ PID+     
Sbjct: 525 GAKYDSQKAFDLVHKLTERFQFALLSASNQLAMEKGPCGYFGKTKYADGILPIDTYKND- 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
              DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 --VDEIIPNDLS-CDWEFLRGRILEYGLRHSTLSAQMPSESSSIVSNATNGIEPPRDYLS 640

Query: 791 VKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +K +  G    +   +   +     LW      D+  +DG                    
Sbjct: 641 IKKSKKGPLKQIVPSYSTLKNNYTLLW------DMHNNDG-------------------- 674

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL-------YLDEPSGKKLDFIYRQAWLMGLKTTYY 902
                  I+  +  QK+ DQA S N          +E   +++   +   +  G KT+YY
Sbjct: 675 ------YIKVTAIMQKFFDQAISGNWSYNPENYPNNEVPMQQMAMDWLNTYKYGWKTSYY 728

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +  A       L        A PV   N     L +      +  CE C
Sbjct: 729 QNTYDAKKDGDDDL--------APPVPTENLINDILTL-----EEENCESC 766


>gi|170077964|ref|YP_001734602.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885633|gb|ACA99346.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
          Length = 780

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 229/799 (28%), Positives = 365/799 (45%), Gaps = 86/799 (10%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
            A  S S++  P  P+  ++   G     +  R+  +V+ AC  L+  ++  + +     
Sbjct: 28  TATYSASRAVTPTKPQTYVIKRSGKRAPLDVTRIRNVVQWACQDLEA-NTIELEAGLKTR 86

Query: 189 MYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           + DG++  +++  LI  +  +   +EP++  V  R  +  L ++ L              
Sbjct: 87  LKDGVTTREIQENLIQCALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGY 137

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               YP+     +        L +     +L      +  + D  ++Y G  +L  RY L
Sbjct: 138 QYGQYPQLVADKVAAKAYDERLLQYSA-AELEIANGWINPDWDMDYDYAGAVLLTKRYLL 196

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
                  E+PQ  F+  A+ LAL E    + K A +FY  ++      +TP L N    +
Sbjct: 197 DD-----ELPQEAFLTCALLLALPEKPENRLKWAKKFYEAIAQRQISLATPILANLRIPN 251

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             LSSCF+  + D+L  IF  +   A ++K  GG+G + + +R  G+ + G    S GVI
Sbjct: 252 GSLSSCFIIGMEDNLESIFREITNAARISKNGGGVGCNVSRIRATGSRVMGKANASGGVI 311

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P++K+ NDTA+AVNQGG+R GA+   L+ WH+DV EFL+++   GD RR+ +D+     +
Sbjct: 312 PWIKLLNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENGDQRRKAYDVFPQLVV 371

Query: 486 PDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            D FM+RV     WTL  P EV      DL  L+G++F+ AY   E  +   +IK+++K+
Sbjct: 372 TDEFMRRVQHKEAWTLVDPYEVKENLGIDLAALWGEKFDAAYRQIEA-SLDQDIKLYKKV 430

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-V 599
            A  L+++++    ETG P+I FKD  N  +P QH G +   NLC E   N    + A  
Sbjct: 431 DARHLFKEIMRSQIETGMPYIAFKDTINRANPNQHEGYIPGVNLCVESFSNVVPGQLAHT 490

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NL         + D+LA     AVR+LDN I+I     E +   N  +R IG+G
Sbjct: 491 CNLDSLNLAN------IEADELADACEVAVRILDNTIEITNTPFEDSSIHNQRYRTIGVG 544

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            MG    L    + Y + EA+   D   E I ++    SV LAQERGAY  F GS W +G
Sbjct: 545 AMGLADWLAKNKLSYKNIEAI---DRLFEDIGYYCTRTSVNLAQERGAYPGFPGSEWSKG 601

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                   + A+       N  +   W+ L + V+  G+RNS+  AIAP  + + + G S
Sbjct: 602 HL------IGAKPITWYRENAHAVDRWERLSEDVRKYGIRNSHITAIAPNTSSSLVQGCS 655

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P+Y   +      G   +   F+      +  W                       
Sbjct: 656 ASILPTYSKFFYDKWAKGTVPIAPPFI-----GKSFW----------------------- 687

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLD 886
                +     +D   ++++ +  QKWID   S+ L         + +EP      K + 
Sbjct: 688 ----FYQENKSMDQRLVVKAVATMQKWIDTGISMELIFNLNQGIYFPNEPERALKAKDIF 743

Query: 887 FIYRQAWLMGLKTTYYLRS 905
            I   AW  G K  YY+R+
Sbjct: 744 EILMLAWAEGCKAIYYIRT 762


>gi|311032548|ref|ZP_07710638.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus sp.
           m3-13]
          Length = 755

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/742 (33%), Positives = 361/742 (48%), Gaps = 85/742 (11%)

Query: 196 SDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +L   LI  +   +++ EP++  V +R L +KL++EV         +         Y  
Sbjct: 58  DELTNQLILEALNHVDELEPDWTYVASRLLSQKLQQEVCR------NRNISKPYTDFYS- 110

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                 ++G+    + ++    ++  L   +  ++D+ F Y+GL+ L DRY    +  R+
Sbjct: 111 LIKGLTDQGIYQPQILKAYTHKEVNELEAIIDPQKDYLFTYIGLKTLSDRYLTRDHHKRL 170

Query: 315 -EMPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            E+PQ  FM +AM L  KE         E Y  LS+ +   +TPT  N+G  + QLSSCF
Sbjct: 171 LELPQERFMIIAMTLMQKEENNRIHYVKEAYWALSNLYMTVATPTFANAGKTYGQLSSCF 230

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TV D L GI+ +  + A L+K  GGLG     +R  G+ I G    S GVIP++K  N
Sbjct: 231 IDTVDDSLQGIYDSNTDIANLSKSGGGLGVYLGKIRSRGSDIRGFKSVSSGVIPWMKQLN 290

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+     IPD+FM++
Sbjct: 291 NTAVSVDQLGQRKGAISVYLDVWHKDIFSFLDSKLNNGDERMRTHDLFNGVCIPDMFMEQ 350

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-------ENYERQADRGEIKVFRKISAVAL 545
           V     W LF P EV  L     ++F           + YE   +  E+    K+ A+ +
Sbjct: 351 VENRGDWYLFDPHEVRKLMGYSLEDFYDESVGAGSFRQKYEECINHPELPK-EKVPAIEI 409

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------ 593
            + ++    ETG P++ ++D  N  +P  H G+++ +NLCTEIT N S            
Sbjct: 410 MKAIMKGQLETGSPFMFYRDEVNRMNPNAHKGMIYCTNLCTEITQNQSATITKKQYVEDG 469

Query: 594 -------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    +  VCNL SINL       Q     L   I   VR+LDNVI++N   + +A
Sbjct: 470 TIITVKTPGDFVVCNLSSINLARTIIAGQ-----LERLIPIQVRMLDNVIELNEIPVLQA 524

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K +N  +RAIGLG  G+   L +  I + S EAV  ADE  E I+FH I AS  LA+E+G
Sbjct: 525 KMTNEKYRAIGLGTFGWHHLLAIEGIKWESNEAVLYADELYEKIAFHTIQASCLLAKEKG 584

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +Y +F+GS W  G +                   +S+L W  L+K+V   G+RN   MA+
Sbjct: 585 SYPAFEGSDWQTGDYFYKR-----------NYGASSKLDWITLQKQVANYGVRNGYLMAV 633

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           AP AT + I G + SIDP +  +Y +        V       +L     W          
Sbjct: 634 APNATTSIIAGSTASIDPIFLKVYSEEKKDYKIPVTAP----DLNAETTW---------- 679

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                             + +A+ ID  W I   + RQK IDQA S NLY  +    K L
Sbjct: 680 -----------------FYKSAYHIDQHWSIAQNAARQKHIDQAISFNLYVTNTVKAKAL 722

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             ++  AW   LKTTYY+RS S
Sbjct: 723 LELHLDAWKQKLKTTYYVRSTS 744


>gi|166367093|ref|YP_001659366.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
 gi|166089466|dbj|BAG04174.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
          Length = 770

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/805 (27%), Positives = 373/805 (46%), Gaps = 91/805 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +   +EP++  V  R  +  L ++ L                  Y +     +++ 
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGYQYGNYEKTVKTQVKKL 143

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           +    +     + +L    + +  + D  ++Y G  ++  RY L       E+PQ   + 
Sbjct: 144 LYDERILIY-SEAELKEAGSWINSDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ D L 
Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AVNQG
Sbjct: 258 SIFDEITNAARISKNGGGVGVNVSRIRATGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A WTL
Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVINKAEWTL 377

Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV      +L +L+G+EFE AY   E      EI +++KI+A  L++ ++    ET
Sbjct: 378 VDPYEVRNKLGIELAELWGEEFEEAYRLVEANL-DQEILLYKKINARDLFKSIMRSQVET 436

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFANNQ 615
           G P+I FKD  N  +P +H G +   NLCTE   N + ++TA  CNL S+NL        
Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPGVNLCTESFSNVTPDKTAHCCNLVSLNLAN------ 490

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    + Y 
Sbjct: 491 IDREEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +   +       E I +    +S+ELA+ERGAY +F GS W QG        + A+    
Sbjct: 551 N---LSEISNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPVAW 601

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              N      W +L   ++  G+RNS+  AIAP  + + + G + S+ P Y   +     
Sbjct: 602 FLNNAVQPQRWQQLATDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G   +   F+         W                            ++    ++   
Sbjct: 662 KGTVPIAPPFIEEA-----FW---------------------------FYSENKNLEQQQ 689

Query: 856 LIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYY 902
           ++++ +  Q+WID   S+ L         + +EP    + K +      AW +G K  YY
Sbjct: 690 VVKAIATMQEWIDTGISMELLFNLNEGVYFPEEPNRCLTAKDIFDTLVMAWELGCKAIYY 749

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVP 927
           +R+     V+K   +  D   ++  
Sbjct: 750 IRT-----VQKDNFRESDDSCSSCA 769


>gi|332708566|ref|ZP_08428540.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
 gi|332352663|gb|EGJ32229.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
          Length = 753

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/814 (27%), Positives = 376/814 (46%), Gaps = 91/814 (11%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            +       ++++  DG+L S +  ++  +VE AC+G +DV+   + +     + DG++ 
Sbjct: 8   TTITQNQGNIQVIKRDGSLTSLDISKIRAVVEWACAG-KDVNPITLEAGLTTRLRDGVTT 66

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +++  LI  +  +   + P++  V  R  +  L ++ L     +            YP 
Sbjct: 67  REIQDNLINCALEMCSPDQPDWRYVAGRLQIWSLWKDTLVNRGYE---------YGDYPR 117

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E G     +     + +L    + +  + D  ++Y G  +L  RY L       
Sbjct: 118 TVRSKVESGQYDPSILTYTTE-ELKEAGSWINRDWDTDYDYAGAVLLTRRYLLGD----- 171

Query: 315 EMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+PQ  F+  A+ L   E  +++   A  FY  ++      +TP L N       LSSCF
Sbjct: 172 ELPQEAFLTCALLLGSVEVPEDRLGWARRFYEAIAQRKISLATPILANLRIPQGSLSSCF 231

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +T++ D+L  IF  + + A ++K  GG+G + + +R  G+ + G    S GVIP++K+ N
Sbjct: 232 ITSIDDNLESIFEGITDTARISKNGGGVGVNVSRIRSTGSWVMGKANASGGVIPWIKLLN 291

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     IPD FM+R
Sbjct: 292 DTAIAVNQGGRRAGAVTVSVDVWHLDVPEFLEMQAENGDPRRKAYDIFPQLVIPDEFMRR 351

Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           V     WTL  P EV      +L +L+ +EFE AY+  E  A    + +++ ++A  L++
Sbjct: 352 VVNKEDWTLIDPYEVRIKLGIELSELWAEEFESAYQTIEA-AIGETLTLYKTVNARELFK 410

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSIN 606
            ++    ETG P++ FKD  N  +P QH G + + NLCTE   N      A  CNL SIN
Sbjct: 411 TIMRSQVETGMPYLAFKDTINRANPNQHQGYIPAVNLCTESFSNVEIGHAAHCCNLDSIN 470

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L         +  +L +  R AVR+LDN ID++    + A   N  +R IG+G MG    
Sbjct: 471 LAN------IEETELPNICRLAVRILDNTIDLSTPPFKAAHSHNQKYRTIGVGCMGLADW 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y +   ++      E I ++   AS+ELA ERGAY++F GS W +G       
Sbjct: 525 LAKRWLTYNN---LKEISNLFEDIGYYCTHASMELAIERGAYAAFDGSEWSKGKL----- 576

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            + A+  +    N      W  L + ++  G+RNS+  AIAP  + + + G + S+ P +
Sbjct: 577 -IGAKPVEWFVENSQHGERWVALSQDIQQFGIRNSHISAIAPNTSSSLVQGCTASVLPVH 635

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              +      G   +   F+ +     + W                           ++ 
Sbjct: 636 SKFFYDKWAKGTVPIAPPFIKD-----NFW---------------------------LYH 663

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAW 893
                D   ++++ +  Q+WID   S+ L         + DEP      K +      AW
Sbjct: 664 ENKNFDQKKVVKAIATIQQWIDTGISMELLFNLNQGVYFPDEPERTLKAKDIYETLVMAW 723

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            +G K  YY+R+     V++   K +D    A  
Sbjct: 724 ELGCKAVYYIRT-----VQRDNFKELDNTCIACA 752



 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
          A    +    +QVIKR+G +TS D SKI   +     A  GK  +       +   L + 
Sbjct: 7  ATTITQNQGNIQVIKRDGSLTSLDISKIRAVVE---WACAGKDVNPITLEAGLTTRLRDG 63

Query: 79 TVTRLLQHN 87
            TR +Q N
Sbjct: 64 VTTREIQDN 72


>gi|210616054|ref|ZP_03290926.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
 gi|210149962|gb|EEA80971.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
          Length = 749

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 372/774 (48%), Gaps = 95/774 (12%)

Query: 174 QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRRE 231
           +D+    +L + +       LS  +    LI ++  L  +E P +  + AR LL    RE
Sbjct: 30  EDIYYLGILEDKFLTFQKPELSIEENLQLLIKAAVELTTQEAPKWEMIAARLLLFTFERE 89

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           +        +     ++  LY +        G+  + + E+    ++      L  ER+ 
Sbjct: 90  LR-------KAEESCQITTLYEKIVY-LTGRGLYGQYILENYTKEEIDEFETFLAPERND 141

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSF 349
            F Y GL++L +RY +H   G  +E PQ  F+ +AM LA+KE  ++      FY++LS  
Sbjct: 142 LFTYSGLELLLNRYVIHTGQGVALESPQEMFLGIAMHLAMKEQKDRALWVKRFYDMLSKL 201

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
               +TPTL N+   + QLSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR 
Sbjct: 202 QVTMATPTLSNARKPYHQLSSCFIDIVPDSLNGIYRSIDNFAKVSKFGGGMGMYFGKVRA 261

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N 
Sbjct: 262 SGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTNN 321

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAY 522
           GDDR + HD+  A   PD F ++   N    W L  P E+       L D YG+ ++  Y
Sbjct: 322 GDDRMKAHDVFPAVCYPDYFWEQARDNIEGDWYLMCPHEILTVKGYALEDCYGEAWKEKY 381

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            +  +     +    R +    + R ++    ETG P+   +D  N  +P  H G+++ S
Sbjct: 382 LDCVQD----DQIKKRVVPIKDIIRLIIKSAVETGTPFTFNRDHVNRMNPNGHKGMIYCS 437

Query: 583 NLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDYD 619
           NLCTEI  N S                         E  VCNL S++L         D +
Sbjct: 438 NLCTEIAQNMSGIEEVEERVETVNGETVVVTVTKPGEFVVCNLASLSLGHLNVE---DGE 494

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           ++A   + AVR LDNVID+N   +  AK +N  +R IGLG+ G+   L    I + S + 
Sbjct: 495 EIADITKCAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKQGISWESEQH 554

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           ++   +    I + AI AS E+A+E+G+Y+ F+GS W  G +         +        
Sbjct: 555 LQFVGDVFSKIHYAAIEASSEIAKEKGSYTYFEGSDWQTGKYFDKRHLKTEK-------- 606

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W++L+++VK  G+RN+  +AIAPT++ + I G S  +DP     +++   +G  
Sbjct: 607 ------WNQLREKVKQQGLRNAYLLAIAPTSSTSIIAGTSAGLDPIMNRYFLEEKKNGLM 660

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             V      EL     W                            +  A  ID  W + +
Sbjct: 661 PRVAP----ELSMETFW---------------------------YYKNAHYIDQKWSVRA 689

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              RQ+ IDQAQS+NLY  +E + +K+  +Y  AW  G+KT YY+RS+S    E
Sbjct: 690 CGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEEGVKTIYYIRSKSLEVEE 743


>gi|160937687|ref|ZP_02085047.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439332|gb|EDP17084.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
          Length = 748

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/799 (30%), Positives = 371/799 (46%), Gaps = 97/799 (12%)

Query: 154 LISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
            I  + K LE  +EE       +      +L         G+  ++   ALI S+  L  
Sbjct: 7   EIDLDYKGLEQCLEEIGRDFQGEGYGLDRLLERYRSFRKPGMGPAEGMEALIRSAAELTS 66

Query: 212 KE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           KE P +    AR        EV   +     K  + ++  L         E+G+    + 
Sbjct: 67  KETPLWEFAAARLRYCGFACEVEEQLKGLGIKGLYEKISYL--------TEQGLYGDYIL 118

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLA 329
           +     ++      L  ER+  F Y GL +L  RY +  +    +E PQ  ++ +++ LA
Sbjct: 119 KHYSREEIEEAEGFLDDERNKLFTYAGLDLLLKRYVIQDHSHHPLETPQEMYLGISLHLA 178

Query: 330 LKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           +KE++  +      FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++
Sbjct: 179 MKESKDCRMQWVRRFYDMLSRMQVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSV 238

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
              A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ NDTAVAV+Q G R+GA
Sbjct: 239 DNFAQVSKFGGGMGLYFGKVRATGSRIRGFEGAAGGVIRWIKLVNDTAVAVDQLGMRQGA 298

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPD 505
              YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +N    W L  P 
Sbjct: 299 AAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCFPDLFWKMAEENLDQDWHLMCPH 358

Query: 506 EV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           E+       L D YG+ +E  Y +        +    R +    + R ++    ETG P+
Sbjct: 359 EIRTVKGYCLEDCYGELWEERYLDCV----GDDRISKRTVLLKDVVRLIIKSAVETGTPF 414

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEET 597
           I  +D  N  +P  H G+++ SNLCTEI  N S                         + 
Sbjct: 415 IFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSPIESVSTQVLEVNGETAVVQTTRPGDF 474

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            VCNL S+ L A   +   D D++     +AVR LDNVID+N + +  A  +N  +R IG
Sbjct: 475 VVCNLASLCLGAIDVD---DPDEVEYIAASAVRALDNVIDLNFYPLAYAGITNQNYRGIG 531

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G+   L    I + S E +  AD+  E I + A+ AS  LA E+G Y  F+GS W 
Sbjct: 532 LGVSGYHHMLAKHGIRWESEEHLVFADQVFERIHYAAVRASANLAAEKGCYRYFEGSEWQ 591

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G +      +  E              W EL ++V   GMRN+  +A+APT++ + + G
Sbjct: 592 TGAYFEKRGLVSRE--------------WKELAEQVAEHGMRNAYLLAVAPTSSTSILSG 637

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  +DP  +  Y++   +     V      +L  R  W                     
Sbjct: 638 TTAGLDPVMKRFYLEEKKNAILPRVAP----DLTPRTFW--------------------- 672

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMG 896
                 ++ + + +D  W + +A  RQ+ IDQAQS+NLY+    + ++L  +Y  AW  G
Sbjct: 673 ------LYKSGYTMDQTWTVRAAGVRQRHIDQAQSVNLYITNDYTMRQLLNLYILAWESG 726

Query: 897 LKTTYYLRSRSATSVEKST 915
           +KT YY+RS+S    E  +
Sbjct: 727 VKTLYYVRSKSLEVEECES 745


>gi|23100544|ref|NP_694011.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22778777|dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 744

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/779 (33%), Positives = 370/779 (47%), Gaps = 95/779 (12%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT-LIEKEPNYAKVTAR 222
             VE A   L  ++      +  K +    SE+ LE ALI  +   + E  PN+    AR
Sbjct: 15  QKVERASQNLN-INKNEWYEKAEKIIPTNSSEAKLEDALINVALENMDEATPNWGFAAAR 73

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
             +EKL RE         +  T       Y     +  E+G+    L +     D+    
Sbjct: 74  IYVEKLYREA-----SNNRGYTQGSYGSFYA-LLEQLTEKGIYTPALLQKYTKEDIEEFG 127

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKR--A 339
             ++ ERD  F YLG+  +  RY    +     E+PQ  +M +AM +   E   +++   
Sbjct: 128 KAIQPERDQLFNYLGIYTVATRYLATDHEKNVYELPQERWMVIAMHIMQDEPADQRQENV 187

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +E Y  LS+ +   +TPTL N+G  H QLSSCF+ TV D L  I+ +  + A L+K  GG
Sbjct: 188 LEAYWALSNLYMTVATPTLTNAGKTHGQLSSCFIDTVDDSLQSIYDSNSDIAKLSKNGGG 247

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +R  G+ I G  G S GV+P++K  N+TAV+V+Q G RKGA+  YL+ WH D+
Sbjct: 248 IGVYMGKIRARGSSIKGFKGMSSGVVPWIKQLNNTAVSVDQLGTRKGAIAIYLDVWHQDI 307

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLY 514
           E FLDL+ N GDDR R HD+ T   +PD FM++V     W LF P EV       L D Y
Sbjct: 308 ESFLDLKLNNGDDRMRAHDIFTGVCLPDYFMEQVENRGDWYLFDPHEVRQVMGYSLEDFY 367

Query: 515 GKE-----FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            ++     F   YE         E    RK+ A+ + ++++    E+G P++ ++D  N 
Sbjct: 368 DEQKGSGSFRTRYEEC----IANEALSKRKVPAIEIMKRLMKSQLESGTPFMFYRDEVNR 423

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINLLA 609
           ++   H G+++ SNLCTEIT N S  E                      VCNL S+NL  
Sbjct: 424 QNANAHEGLIYCSNLCTEITQNQSPTEFVEEFLENENTIVKKFKSGDYVVCNLSSVNLGR 483

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N     D L   I   VR+LDNVIDIN   I++A+ +N  +RAIGLG  G+   L L
Sbjct: 484 AVKN-----DVLERLIPIQVRMLDNVIDINTLPIKQAEITNRKYRAIGLGTFGWHHLLAL 538

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             I + S EAV  ADE  E I++  I +S+EL++E+G Y  ++GS W  G +        
Sbjct: 539 KGIAWESDEAVAYADELYEKIAYLTIQSSMELSKEKGHYPVYEGSKWQTGEY-------- 590

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       +   WDELK  VK  GMRN   MA+AP +T A I G + SIDP +Q  
Sbjct: 591 ------FDQKGYTGNKWDELKAEVKQHGMRNGYLMAVAPNSTTAMIAGSTASIDPIFQVF 644

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +        V    L                   Y+                   +A+
Sbjct: 645 YYEEKKDFKIPVTAPEL---------------DHHTYN---------------VYRRSAY 674

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +D  + ++  ++RQK IDQ+ S N Y+        L  ++ QAW  GLKTTYY+RS S
Sbjct: 675 IVDQRFSVKQNAKRQKHIDQSISFNFYVPNTIKASVLLDLHTQAWREGLKTTYYVRSTS 733


>gi|254168812|ref|ZP_04875653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622249|gb|EDY34823.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 230/895 (25%), Positives = 392/895 (43%), Gaps = 178/895 (19%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E+ + ++VIKR+  +  F   KI +AIMKA  ++ G         ++  + +T + V 
Sbjct: 12  MSEEGEVMKVIKRDSRIVDFSEDKIFQAIMKAMNSIGG-------YSEEDAQRVTWKVVE 64

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           ++ +       + +E IQD VE +LM  G+  + + Y+LYREER  +R A+         
Sbjct: 65  KIKESRV--ERITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKV------- 115

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                I + D   ++ N+ +    V EA   L+D +  +                     
Sbjct: 116 -----IGVQDDLKLTVNAIK----VLEARYLLKDENGNV--------------------- 145

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLR------REVLTTVYKKPQKATHHEMQCLYPEY 255
            I + R + E+   Y  +   F  + +       +E    V +KP+  +  E   L    
Sbjct: 146 -IETPRQMFERTARYLALVDIFYEDDIYDKEGKQKERKIDVEEKPEFLSIWEFNML-KRA 203

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  + +EG          M  D  Y+ + LK + D                      +IE
Sbjct: 204 FTYFSKEGY---------MKVDFSYVLDSLKSKWD----------------------KIE 232

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             +  F                       ++    ++ ++PTL N+ T+  QLS+CF+  
Sbjct: 233 RVKNKFA---------------------EVMLHRKYVPNSPTLMNANTKLGQLSACFVLP 271

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +   
Sbjct: 272 VPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVAT 331

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM+ + +
Sbjct: 332 DVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMEALLR 388

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  + L +P    ++                           +KI A  +W  ++T  ++
Sbjct: 389 DDYYPLRNPRNGEEV---------------------------KKIKARQVWDLIITQAWK 421

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P I F D  N R P +H+G + S+N C E  L         CNLGSINL     N +
Sbjct: 422 TGDPGIIFIDEVNRRHPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGK 477

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY 
Sbjct: 478 IKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYD 537

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W                   
Sbjct: 538 SEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW------------------- 578

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W       K + +RN+    IAPT TI+ I G S SI+P +   +++  +
Sbjct: 579 ----------WK------KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIAFIRRVL 622

Query: 796 SG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            G +   VN      +K+  L+ E ++       GS+ +I+ +P+++K++  TA +IDP+
Sbjct: 623 DGQELLEVNPLFEEIMKREGLYSEELM-HKVAETGSVQHIDDVPENIKRLFRTAHDIDPV 681

Query: 855 WLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           W +   +  QK++D A S  +    + S   ++  Y  AW +  K     R  S 
Sbjct: 682 WHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSK 736


>gi|15896522|ref|NP_349871.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum ATCC 824]
 gi|15026353|gb|AAK81211.1|AE007823_5 Ribonucleotide reductase alpha subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510680|gb|ADZ22316.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum EA 2018]
          Length = 743

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/788 (29%), Positives = 388/788 (49%), Gaps = 95/788 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYD----GLSESDLETALIFSSRTLIE-KEPNY 216
           +E + +EA  G+ D  +    ++    +      G+ E ++  ++I     L +  EP +
Sbjct: 4   VENLCKEALKGINDDENIYTKTKLINVLKHITREGMKEEEIIKSVIQVCLELTKADEPKW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  +R  +  L  EV     K    + + +    + ++  +  +EG+  + + E+    
Sbjct: 64  LQGASRLYVINLYNEV----RKNRNISENEDPYKGFYDFIVKLTDEGLYGKYILENYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEK 335
           D+  L + +K +RDF F Y G+++L +RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIYELESFIKKDRDFLFTYSGIKLLSERYLIQNFERKVLELPQQMFMGIAMHLAVPEKQE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 180 NRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDTVDDSLKGIYKSLDNFANV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +KY GG+G  +  VR +GA I G  G S GV+P++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKYGGGMGVYFGKVRSMGASIRGFKGASGGVVPWVKLFNDTAIAVDQLGVRNGSVAVWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV---- 507
            WH D+ EF+ LR N GDDR++ HD+      PDLF +   +  +A W +  P E+    
Sbjct: 300 AWHKDLPEFMQLRTNNGDDRKKAHDVFPGVCYPDLFWRLAEEDIDANWYMMCPHEIKLVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y +        +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDYYGEEWEKRYFDCVNDPRIDK----RMMSVKDIVRLIIKSAAETGTPFAFYRDA 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                       S +  VCNL 
Sbjct: 416 ANRMNPNKHKGMIYSSNLCTEIMQNMSAMDILEDEIIDENGDKIIVQKAKSGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SI L     N   D ++L   I T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 476 SIVLGNVDVN---DDEELQYVIETQIRAMDNVIDLNYYSVPFAEVTNKRYRGIGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + + S +  E  D   E I+++AI AS+ +A+++G Y  F+GS W+ G +  
Sbjct: 533 HHMLTNNRVVWTSDDHFEFTDRVYEKINYYAIQASMNIAKDKGRYEYFEGSDWENGSY-- 590

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                         +   +   W  L  ++K  GMRN   MA+AP  + A I G S+ +D
Sbjct: 591 ------------FKLRGYNSPKWKALIAKIKKYGMRNGYIMAVAPNGSTATIAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         +   +   L + + W                           
Sbjct: 639 PVMARFWMEEKKG----SITPKIAPNLSRENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ID    ++    RQ+ IDQ+QS NLY+    + +++  +Y +A+  G+K+ YY
Sbjct: 668 FYNSAYNIDQKLCVKINGIRQRHIDQSQSFNLYITTDYTMRQIMNLYIEAYKSGVKSIYY 727

Query: 903 LRSRSATS 910
           +RS+S T 
Sbjct: 728 VRSKSLTV 735


>gi|61806079|ref|YP_214439.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374588|gb|AAX44585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525291|gb|ACY76088.1| NrdA [Prochlorococcus phage P-SSM2]
          Length = 775

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 208/830 (25%), Positives = 352/830 (42%), Gaps = 86/830 (10%)

Query: 147 IMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +   +G  +   N +++ ++ EEAC GL  VS+  V  ++    YDG++ ++++  LI S
Sbjct: 7   VKKRNGRGVEPLNLEKIHVMCEEACEGLAGVSASQVEIQSGIQFYDGITTAEIQEILIRS 66

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  LI+   PNY  V AR LL  LR+++   + + P             ++  + +++G+
Sbjct: 67  ASDLIDLDHPNYQFVAARLLLFSLRKQLFGRLRECPTVI----------DHVQKCVKKGI 116

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
               + +   + +   L + + + RDF F Y GL+ + D+Y +     G   E PQ  ++
Sbjct: 117 YDAEILDLYSEEEYNRLQSFIDHSRDFLFTYAGLRQVVDKYLVQDRSTGEVYETPQFMYL 176

Query: 323 RVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A  +  K  ++ +     ++Y+ +S       TP +    T   Q +SC L  + D L
Sbjct: 177 MIAATIFSKYPKETRLDYVRKYYDAISRHRINIPTPIMAGVRTPIRQFASCVLVDIDDTL 236

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF +            G+G +   +RG+ A I G   +  GV+PFLK    T     Q
Sbjct: 237 DSIFSSDMAIGKYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVVPFLKKFESTVRCCTQ 296

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R G+   +   WH ++ + L L+ N G +  R   ++ +  +  LF +R  QN   T
Sbjct: 297 NGIRGGSATVHFPIWHQEISDILVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIQNLPIT 356

Query: 501 LFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP +V  L+D +G + F+  Y  YE      E      I A  L   +L    ETG  
Sbjct: 357 LFSPHDVPGLYDAFGSDTFDELYTQYESD----ESIPRTTIGAQELILDLLKERAETGRI 412

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAHF 611
           ++   D CN  S    +  V  SNLC EITL +           E A+C L +IN+    
Sbjct: 413 YLMNIDHCNSHSSF--LDKVEMSNLCQEITLPTKPIQHIDDETGEIALCILSAINIGKIR 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D   L      ++R LD +ID   + +  A+ +    R++G+G +G    L    
Sbjct: 471 -----DVSDLEGLCDLSIRSLDELIDFQGYPVRAAEIATKARRSLGVGFIGLAHYLAKQG 525

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y  PEA ++  +  E   ++ I +SV LA+E+GA +    + + QG+ PID+      
Sbjct: 526 VKYEDPEAWKLVHDLTEVFQYNLIKSSVNLAKEKGACTYSDRTKYSQGILPIDTYKQD-- 583

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             DEL  N  S   W+ L++ VK  G+RNS   A  P+ + + +C  +  I+P    L +
Sbjct: 584 -VDELVPNNLS-CDWESLREDVKQYGIRNSTLSAQMPSESSSVVCNATNGIEPPRGYLSI 641

Query: 792 KSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           K +  G    +   +   +     LW                    +P++          
Sbjct: 642 KKSKKGPLKQIVPSYNTLKNNYTLLW-------------------DMPNNTGY------- 675

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 I   +  QK+ DQA S N   +       E     +       +  G KT+YY 
Sbjct: 676 ------INIVAVMQKFFDQAISGNWSYNPQHFDEGEVPTSVMAQDLLTTYKYGWKTSYYQ 729

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +    + E      +D  ++         ST    + S   +  ECE C
Sbjct: 730 NTYDVKTDE------IDLSVSNPNDVGIQGSTRLENLISELENQEECESC 773


>gi|159041217|ref|YP_001540469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
 gi|157920052|gb|ABW01479.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
          Length = 877

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 228/862 (26%), Positives = 382/862 (44%), Gaps = 74/862 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETAL 202
           + ++  +G    FN  +L   ++ A +     + + +L E    +     ++ S++  ++
Sbjct: 12  ITVIKRNGLREEFNPVKLLNSLKLAGA----PNPERILEEVTSQIKGKGEVTSSEISDSV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                 LI ++  +      +LL  + ++       K   +    +   Y      +  +
Sbjct: 68  QLMMLNLISEDFKWHDAARNYLLFSIYKQAWGKEVVKSINSGSLTLSEAYRRGLRDWFNQ 127

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318
           G+   L       F    L  L N L   RD    Y G++ L  RY +  ++GS  E PQ
Sbjct: 128 GLNQGLWSLDAAKFYEKHLDELMNKLDPSRDLLLTYNGVRTLMSRYLMKRLDGSFFETPQ 187

Query: 319 AFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
             +MR+AMG+A  E     +  K   +FY+L+S   F+ ++PT+FN+ T+  +LS+CF+ 
Sbjct: 188 YMWMRIAMGVAYSEVKYGNDPIKWVEKFYDLVSQLKFLPNSPTMFNALTKLGELSACFVI 247

Query: 375 TVPDDLY------------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            V D L             GI  A +  A+L +   G+G  +  +R  G  +  T+G + 
Sbjct: 248 PVDDCLSKDSNRDNPNCFFGIMDAAKLAALLFQAGAGVGYQFGELRPEGDVVKSTSGVAS 307

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+++ +     + QGGKR+GA    L  WH D+E+F+  +     D +   + N +
Sbjct: 308 GPLSFMRLFDTLVDVIKQGGKRRGAQMGMLFWWHPDIEKFITSKTGRLKDVQ-LQNFNIS 366

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I D FM +  +     L +P E + L+  +G+EF   YE    +   G +KV+R+++A
Sbjct: 367 VTIDDYFMTKALRGEDVYLLNPRECTCLYQTWGQEFIKCYEECVSKVKAGLVKVWRRVNA 426

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQH------VGVVHSSNLCTEITLNSSSEE 596
             LW K++   +++G P +  +D  N++    +        V++ +N C E+ L      
Sbjct: 427 GELWSKIVESAWDSGDPGLWNRDVANMKIEYVNDVVSEKYRVINGTNPCGEVALYPFES- 485

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL  +   N  D+  LA+ I  AVR LD+VID N H  E   ++N   R I
Sbjct: 486 ---CNLGSINLTKYINGNSIDWVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRRI 542

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L  L IPY SP+A+ +AD  M F++  A+ ASVELA+E+G +  +  S W
Sbjct: 543 GLGINGWADVLVSLDIPYDSPKAIALADVVMGFVARVAVRASVELAKEKGPFPLWPSSKW 602

Query: 717 DQGVFPI----DSIGLLAEVRD------------ELAMNRTSRLP-------------WD 747
             G  P     + +  + EV+             +L       LP              D
Sbjct: 603 RSGFLPWRVHDERVSKMLEVKGVSSDVEEYLEILKLGYGELGGLPNKAEEYLAKLRATDD 662

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL K   T+G+RN   ++IAP  + + I GV+ SI+P +   YV++   G     N   +
Sbjct: 663 ELIKDASTVGVRNGALISIAPEGSRSLIAGVNSSIEPIFAIAYVRNLSIGKLIEYNYTAL 722

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +  D    S +    G + +   +   LK    TA EI   W +       KW 
Sbjct: 723 RKLKDSNALDNETTSKV-LESGMLPSNHVMHPVLK----TANEIHWRWHVFMQVTFAKWS 777

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           D   S  + +    + + ++  YR AW +G       R +S       T  GV+GK  A 
Sbjct: 778 DSGVSKTINMPSNATKEDVNGAYRLAWALGAFGITVYRDKSKAVQVIYT--GVEGKGKAQ 835

Query: 927 PVTDPNSSTHSLGIPSSCTSDT 948
                        I  +   + 
Sbjct: 836 STESKAIKVTVKAINLNRDIEE 857


>gi|295698299|ref|YP_003602954.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291157020|gb|ADD79465.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 764

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 186/798 (23%), Positives = 324/798 (40%), Gaps = 81/798 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   +G L   + K+++ ++  +  GLQ +S   +   +    Y+ +    +   +I +S
Sbjct: 7   VTKRNGDLEKIDLKKIKRLITLSADGLQGISISKIQDLSCIQFYNKIQTKLIHQIIIKTS 66

Query: 207 RTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             LI  K P+Y  ++AR  +  LR++        P K   H             +  G  
Sbjct: 67  ADLISTKIPDYQYLSARLAISYLRKDAYGEF--NPPKLYQH---------VKNMVSIGKY 115

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
              L E     +   +   + + RD  F Y  ++ L  +Y +     G   E  Q  ++ 
Sbjct: 116 DYRLLEDYSVEEFQKMDQFINHLRDMNFCYAAVKQLEGKYLVKDRVTGKIYESAQFLYIL 175

Query: 324 VAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           V+  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D L 
Sbjct: 176 VSACLFSIYPKDVRLIYVKRFYDAISTFKISLPTPIMAGIRTPTRQFSSCVLIECDDSLD 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I               G+G +   +R +G+ I        G IPF K       + +QG
Sbjct: 236 SINATASSIVKYVSQRAGIGINAGRIRAIGSPIRQGEAFHTGCIPFYKYFQAAVKSCSQG 295

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+ +    TL
Sbjct: 296 GIRGGAATIFYPIWHLEVESLLVLKNNRGVESNRVRHLDYAVQINKLMYERLIRGEEITL 355

Query: 502 FSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP +V DL+  +  +   FE  Y+ YE      +    +++ AV L+ KM+     TG 
Sbjct: 356 FSPSDVPDLYSCFFSDQDKFENLYKKYELD----QNIRKKRVKAVDLFSKMMQERSSTGR 411

Query: 559 PWITFKDPCNIRSPQQ-HVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINLLA 609
            +I   D CN  SP    +  +  SNLC E+         +N    E A+C L + NL  
Sbjct: 412 TYIQNVDHCNTHSPFDSKIAPIRQSNLCLEVLLPTHPLYNINDQEGEIALCTLSAFNLGE 471

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +      ++L       VR LD ++D   + I  AKKS+ + R +G+G++ +   L  
Sbjct: 472 IRS-----LEELEDLSDLIVRALDALLDYQDYPILAAKKSSISRRTLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            H+ Y+   A  +  ++ E I ++ + AS +LA+E+GA S F  + + +G+ PID+    
Sbjct: 527 NHVKYSDSSANNLTHKTFEAIQYYLLKASNQLAKEKGACSWFHHTNYSKGILPIDNYKKS 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                +   +      W  L++R+K  G+RNS   A+ P+ T + I   +  I+P    +
Sbjct: 587 L----DHLTSEPLHYDWKSLRERIKKYGLRNSTLSAVMPSETSSQISNATNGIEPPRGFM 642

Query: 790 YVKSNMSGDFTVVNSFLVN-ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            +K +  G    +       + K   LW                    +P+++  +    
Sbjct: 643 SIKVSKDGILRQIVPEYDRLKKKYELLW-------------------EMPNNIGYL---- 679

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTY 901
                    +     QK++DQ+ S N   D     +       L      A+  G+KT Y
Sbjct: 680 ---------QLVGIIQKFVDQSISANTNYDPSKFDRNQIPMNHLLKDLLLAYKYGIKTLY 730

Query: 902 YLRSRSATSVEKSTLKGV 919
           Y  +R  +   +   + +
Sbjct: 731 YHNTRDGSDKIQEKSESI 748


>gi|326782537|ref|YP_004323091.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002751|gb|ADO97150.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 769

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/835 (25%), Positives = 346/835 (41%), Gaps = 99/835 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  +G     N  ++  +VE AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRNGEKTPLNLDKVHAMVEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V            H +      E+  + +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFGLRKAVYNG---------HPDGHPPLLEHVKKCVGI 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
           GV    + +   D +   L + + +ERDF F Y G++ + D+Y +    +G   E PQ  
Sbjct: 118 GVYDSAILQKYTDEEWEKLNDFMDHERDFLFTYAGIRQVTDKYLVQDRSSGEIYETPQFM 177

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   + +  + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 238 TLDSIFSSDMAIGQYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  QN  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIQNGT 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y +YE      +    + + A  L   +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDARYVDYESD----QSIPRKTVDAQKLILDLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN    
Sbjct: 414 RVYIMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAIN---- 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D+L      AVR LD +ID   + ++ A++S    R++G+G +G    L   
Sbjct: 468 -VGKLKNLDELDELCDLAVRGLDALIDYQEYPVKAAEQSTTNRRSLGIGYIGLAHYLAKN 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GAKYDSAKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKSD- 585

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
              DE+  N   +  W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 586 --VDEIVPNE-LQCDWEFLRSRILQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYLS 642

Query: 791 VKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +K +  G    +   +   +     LW      D+  +DG                    
Sbjct: 643 IKKSKKGPLKQIVPSYTTLKNAYTLLW------DMHNNDG-------------------- 676

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYRQAWLMGLK 898
                  I+  +  QK+ DQA S N   +  +            K L   Y+  W    K
Sbjct: 677 ------YIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSEMAKDLLNTYKYGW----K 726

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+YY  +              DG    V     N     L      T + +C+ C
Sbjct: 727 TSYYQNTYDI---------KKDGDDEEVKTNVDNLIDELLN-----TEEEDCDSC 767


>gi|326781923|ref|YP_004322325.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003113|gb|ADO97511.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 765

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 196/829 (23%), Positives = 351/829 (42%), Gaps = 92/829 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DG +   + +++ ++VEEAC GL  VS+  V  ++    YDG++ ++++  LI +
Sbjct: 6   KVKKRDGRIEPLDLEKMHLMVEEACQGLAGVSASQVEMKSGIQFYDGITTAEIQEILIKA 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  LI+   PNY  V AR LL  LR+ +   + + P   TH              + + V
Sbjct: 66  ASDLIDLDHPNYQFVAARLLLFSLRKSLYGKMRELPHLETH----------INDCVGKEV 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFM 322
               ++      ++  + + + + RDF F Y GL+ + D+Y +     G   E PQ  +M
Sbjct: 116 YDSDIYTKYSKEEIEKVNSYIDHNRDFLFTYAGLRQVVDKYLVQDRSGGGVYETPQFMYM 175

Query: 323 RVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ +  +  ++ +      +Y+ +S       TP +    T   Q +SC L  V D L
Sbjct: 176 MIALTIFREYPKETRLSYVKRYYDAISKHRINIPTPIMAGVRTPLRQFASCVLVDVDDTL 235

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF +            G+G +   +RG+ + I G   +  GV+PFLK    T     Q
Sbjct: 236 DSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCTQ 295

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   +   +
Sbjct: 296 NGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIADGEIS 355

Query: 501 LFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP +V  L+D +G + F+  Y +YE      +    + + A  L   +L    ETG  
Sbjct: 356 LFSPHDVPGLYDAFGTDAFDARYVDYESD----QSIPRKTVRAQELILNLLKERAETGRI 411

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAHF 611
           ++   D CN  S  +    V  SNLC EITL +           E A+C L +IN+    
Sbjct: 412 YLMNIDHCNSHSSFK--DKVEMSNLCQEITLPTYPLQHIDDEGAEIALCILSAINVGKVR 469

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ++     ++L      +VR L+ +ID   + ++ A+++    R++G+G +G    L  L 
Sbjct: 470 SD-----EELEELCDLSVRGLEELIDYQEYPVKAAERATKARRSLGIGFIGLAHYLAKLG 524

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y S EA +      E   ++ + +S ++A+E+G  + F  + +  G+ PID+     +
Sbjct: 525 YKYDSQEAWDAVHGLSESFQYYLLKSSNQIAKEKGWCADFGRTKYSDGILPIDTYK---K 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             DE+     +   W+ L+  +   G+R+S   A  P+ + + +   +  I+P    L +
Sbjct: 582 DVDEITTEGLAH-DWESLRASILEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSI 640

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G    +                          GS+ N   +  D++         
Sbjct: 641 KKSKKGPLKQIVPQY----------------------GSLKNNYTLLWDME--------- 669

Query: 852 DPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK----KLDFIYRQAWLMGLKTTYYLR 904
                I   +  QK+ DQA S N      + P  +     +   +   +  G KT+YY  
Sbjct: 670 SNRGYINVVAVMQKFFDQAISGNWSYNPENYPDNEVPVSTMAQDFLTTYKYGWKTSYYQN 729

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +    S E               V +  S  H++        + ECE C
Sbjct: 730 THDMKSDE---------------VEEEKSELHNILNELEQAEEGECESC 763


>gi|150015086|ref|YP_001307340.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901551|gb|ABR32384.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 743

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/780 (30%), Positives = 375/780 (48%), Gaps = 93/780 (11%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLR 229
            GL       +L      +   +++ ++  +LI  +  L    EPN+  V AR    +L 
Sbjct: 19  EGLYTED--KLLDALNPIVRKDMNKREIRNSLIQVALELTTDMEPNWQYVAARAYTYELY 76

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
             V ++   +  K  + +    Y E+     E G+    + ++    D++ L  D+K ER
Sbjct: 77  DRVRSSRNLEDDKNLYQD----YYEFIESLTERGLYGEYILKNYSREDILELEKDIKPER 132

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           DF F Y G+ +L  RY +   N S IE+PQ  FM +AM LA+ E E+ +   A  FY++L
Sbjct: 133 DFLFNYSGINLLASRYLVQDYNRSPIELPQQMFMGIAMHLAIPEKEENRVYWAKRFYDVL 192

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           SS     +TPT+ N+     QLSSCF+ +V D L GI+ +L   A ++K+ GG+G     
Sbjct: 193 SSLKATMATPTMSNARKPFYQLSSCFIDSVEDSLEGIYKSLDNFAKVSKFGGGMGIYMGK 252

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL +R
Sbjct: 253 IRALGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIR 312

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-----LHDLYGKEFE 519
            N GDDR++ HD+      PDLF +      +A W +  P E+ +     L D YG+++E
Sbjct: 313 TNNGDDRKKAHDVFPGICYPDLFWRLAENDIDANWHMMCPHEIKNIKGYALEDFYGEQWE 372

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E Y       E    R +S   L R ++    ETG P+  ++D  N  +P +H G++
Sbjct: 373 ---EKYYECVSD-ERIEKRVMSVKDLVRLIIKSAVETGAPFAFYRDMTNKMNPNKHNGMI 428

Query: 580 HSSNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQF 616
           +SSNLCTEI  N S                         +  VCNL S+ L      N  
Sbjct: 429 YSSNLCTEIMQNMSPMKIQKSQILSDKDEYAVVEKIIPGDFVVCNLSSVVLGNIDVCND- 487

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             +++   + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +  
Sbjct: 488 --EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGLGTSGYHHMLVNNKIHWTE 545

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E     D+  E I+++AI AS+ +++E+G Y  FKGS WD G +               
Sbjct: 546 EEHKSFVDKIYEKINYYAIKASMNISKEKGFYELFKGSDWDTGEY--------------F 591

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +   W+ELK+ V   G RN   +A+AP  + A I G ++ IDP     Y++    
Sbjct: 592 RLRNYNSAKWNELKELVHEFGTRNGYLIAVAPNGSTATIAGTTEGIDPIMARFYLEEKKG 651

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                                   + +D    + +A+ I+ MW 
Sbjct: 652 SIIPKTAP-------------------------------NLSEDNYWYYNSAYNIEQMWC 680

Query: 857 IESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ++    RQ+ IDQ QS NLY     + +++  +Y +A   G+K+ YY+RS+S    E  T
Sbjct: 681 VKMNGIRQRHIDQGQSFNLYITSSYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTECET 740


>gi|188590737|ref|YP_001919719.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501018|gb|ACD54154.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 741

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/793 (30%), Positives = 377/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYD----GLSESDLETALIFSSRTLIEK-EPNY 216
           L+ + + A  G++D        +  K +      G+  +D+  +LI  S  L    EPN+
Sbjct: 2   LKKLCDLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V     K         +   Y E+     E  +    + E+    
Sbjct: 62  QYAASTIYMYELYDKV----RKNRNLDISKNLYDNYYEFIKELTERNLYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK 335
           D++ L  ++K ERDF F Y G++++  RY +   N   IE+PQ  FM +AM LA+ E ++
Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+ +  
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYCLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                       + +  VCNL 
Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      N    ++L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVLND---EELEYVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G +  
Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNGNY-- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                         +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 589 ------------FELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++                                            + +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAP-------------------------------NLSEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY   + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVEKST 915
           +RS+S    E  +
Sbjct: 726 VRSKSLEVTECES 738


>gi|317130867|ref|YP_004097149.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475815|gb|ADU32418.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 726

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/748 (32%), Positives = 364/748 (48%), Gaps = 87/748 (11%)

Query: 199 ETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           E  L+ ++   I   EP++  V A   L++L ++V      +P+     E+   +     
Sbjct: 32  EKDLLLAALDRISSDEPDWTYVAATIRLQQLYKQVAEKRQMRPE-----EVYTGFAHNVT 86

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM 316
             +E G   + L  +    DL  L   L    D  F YLGL  L DRY      G  +E+
Sbjct: 87  YLVEAGFYDQDLAGAYQKDDLERLEAALNKSNDSKFTYLGLHTLIDRYLTRDHEGHILEL 146

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  FM +AM L  +E + ++    +E Y  LS+ +   +TPTL N+G  H QLSSCF+ 
Sbjct: 147 PQERFMIIAMTLMKEEKQSKRLDYVLEAYWALSNLYMTVATPTLSNAGKTHGQLSSCFID 206

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D L GIF +  + A L+K  GG+G     +R  G+ I G  G S GV+P++K  N+T
Sbjct: 207 TMDDSLRGIFDSTTDAATLSKNGGGIGIYLGKIRAKGSSIKGFKGTSSGVLPWMKQLNNT 266

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   +PDLFM++V 
Sbjct: 267 AVSVDQLGQRQGAIAVYLDVWHKDIFSFLDAKLNNGDERKRTHDLFTGVCLPDLFMEKVE 326

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
               W LF P EV       L D Y +E       E YE+      +     + A+ + +
Sbjct: 327 AREAWFLFDPHEVRQTMGFSLEDFYDEERGAGSFREKYEQCVRDPRLSK-ESVPAIEIMK 385

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------- 593
           +++    ETG P++ ++D  N ++P  H G+++ SNLCTEI  N S              
Sbjct: 386 RVMISQLETGTPYMFYRDEANRQNPNAHCGMMYGSNLCTEIMQNMSATTIKEETTEDGKI 445

Query: 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                + +  VCNL SINL     +       L+  I   VR+LDNVIDIN   + +A+ 
Sbjct: 446 LITKEAGDYVVCNLSSINLATAVTDGV-----LSRLIPIQVRMLDNVIDINNIEVPQARL 500

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L +  + + S EA+  AD+  E I++  I AS+ELA+E+GAY
Sbjct: 501 TNEKYRAIGLGTFGWHHLLAITGLRWESEEAINFADKLYEKIAYLTIEASMELAKEKGAY 560

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+ S W  G +               +    +   W  L + V   G+RN   MA+AP
Sbjct: 561 EKFENSAWHTGKY--------------FSQRNYTDEKWIALAEMVNRSGLRNGYLMAVAP 606

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            ++ A I G + SIDP Y+  Y +   +    V                           
Sbjct: 607 NSSTAIIAGTTASIDPIYRKEYAEEKKNFRIPVTAP------------------------ 642

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                   I       + +A +ID +W ++    RQK IDQ  S N+Y  +    K+L  
Sbjct: 643 -------DISPATTWYYKSAHDIDQIWSVKQNGARQKHIDQGVSFNIYVKNTVKAKELLD 695

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I+  AW  GLK+TYY+RS S+   E  +
Sbjct: 696 IHLSAWKHGLKSTYYVRSTSSEIDECES 723


>gi|167462364|ref|ZP_02327453.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 729

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/730 (32%), Positives = 342/730 (46%), Gaps = 86/730 (11%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC---RYIEEGVKARL 268
             P++  V A   L  L +           K   ++    Y +++        +G+ +  
Sbjct: 37  THPDWTYVAAYVFLRSLYKAA--------SKNRVYDTSNKYGDFYALIKTLSTQGIYSPD 88

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMG 327
           +       ++     +++ ERD  F Y+GL+ L DRY     +G   E+PQ  FM +AM 
Sbjct: 89  ILRLYSKDEINEFGREIEPERDKLFNYIGLKTLADRYLAKSYDGEVYELPQERFMIIAMT 148

Query: 328 LALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           L + E E  +     E Y  LS+ +   +TPTL N+G    QLSSCF+  V D L  I+ 
Sbjct: 149 LMMYEREDHRADLVKEAYWALSNLYMTVATPTLANAGLSFGQLSSCFIDIVDDSLRSIYD 208

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + AML+K  GG+G     +R  G+ I G  G S GVIP+++  N+TAV+V+Q G+RK
Sbjct: 209 SNTDVAMLSKNGGGIGVYVGKLRARGSDIKGFKGVSSGVIPWVRQLNNTAVSVDQLGRRK 268

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G++  YL+ WH D+  FLDL+ N GD+R R HD+     IPDLFM+ V     W LF P 
Sbjct: 269 GSIAVYLDVWHKDILAFLDLKLNNGDERLRAHDIFPGVCIPDLFMESVRDRGDWYLFDPH 328

Query: 506 EV-----SDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           EV       L D Y +E       + YE   D  E+   R + A+ + + ++    ETG 
Sbjct: 329 EVRRIMGYSLEDFYDEEKGEGSFRQKYEECVDSPELAKVR-VPAIEIMKSIMKSQLETGT 387

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------------------SEETA 598
           P++ ++D  N  +P  H G+++ +NLCTEI  N S                      +  
Sbjct: 388 PYMFYRDEANRMNPNGHAGMIYCTNLCTEIMQNMSPTVVVEEETDRDGNIITTKEPGDFV 447

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHTHRAI 656
           VCNL SINL          Y+ L   I   VR+LDNVIDIN   IE  +A  +N  +RAI
Sbjct: 448 VCNLSSINLTRA-------YEVLDRLIPIQVRMLDNVIDINADKIEVQQAVVTNRKYRAI 500

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L +  I + S +A   A+E  E I++  I AS  LA E+G Y +++ S W
Sbjct: 501 GLGTFGWHHLLAVRGIQWESEDAATFANELYEKIAYLTIRASCMLAAEKGPYPAYEVSDW 560

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G + I            L M +     W++L   V   G+RN   MA+AP  + A I 
Sbjct: 561 STGDYFIKH---GYARPGFLEMKKGDLTDWEDLADNVTIYGIRNGYLMAVAPNMSTAKIG 617

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  IDP +   Y +              V +L    +W                    
Sbjct: 618 GSTDGIDPIFMRTYSEEKSKYKI----PVTVPDLTTSTMW-------------------- 653

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
                  ++ +AF ID  W I   + RQ+ IDQ  S NLY+      K L  ++  AW  
Sbjct: 654 -------LYKSAFNIDQTWSIRQNAARQRHIDQGVSFNLYVPNGVKAKDLLGLHMLAWES 706

Query: 896 GLKTTYYLRS 905
           GLK+TYYLRS
Sbjct: 707 GLKSTYYLRS 716


>gi|326784254|ref|YP_004324792.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003485|gb|ADO97881.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 765

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/830 (25%), Positives = 353/830 (42%), Gaps = 93/830 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L ++  DG     N  ++  +VE AC+GL  VS   V   +    +DG+  +D++  LI
Sbjct: 7   ELHVVKRDGEKEVMNLDKVHAMVEHACNGLAGVSESHVEMNSNLQFFDGIKTADIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR++V            H +      E+  + + +
Sbjct: 67  RSANDLISLEAPNYQFVAARLLLFGLRKQVYNG---------HPDGHPPLLEHVKKCVGK 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
           GV    +     D +   L + + ++RD+ F Y G++ + D+Y +     G   E PQ  
Sbjct: 118 GVYDGGILSMYTDEEWEKLNSYIDHDRDYLFTYAGIRQVTDKYLVQDRSTGEIYETPQFM 177

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQNDDRFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T    
Sbjct: 238 TLDSIFSSDMAIGYYVSQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R   N+ 
Sbjct: 298 TQNGIRGGSATVHFPIWHAEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIANSV 357

Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G  +F+  Y + E+     ++   + ++A  L+  +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDDFDELYCDAEQ----NDLIPRKTVNAQKLFLDLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN    
Sbjct: 414 RMYIMNIDHCNTHSSFK--DKVNMSNLCQEITLPTDPIQHIDGGGEIALCILSAIN---- 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D+L      AVR LD +ID   + +  AK+S    R++G+G +G    L   
Sbjct: 468 -VGKLKNLDELDELCELAVRGLDALIDYQHYPVAAAKQSTINRRSLGIGYIGLAHYLAKH 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYK--- 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 KEVDEIVPNDLS-CDWEYLRGRITEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +     N LK     +  ++ D+  +DG                     
Sbjct: 643 VKKSKKGPLKQIVP-SYNSLKN----NYTLLWDMHNNDG--------------------- 676

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYL 903
                 I+  +  QK+ DQA S N   +  +          +       +  G KT+YY 
Sbjct: 677 -----YIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYYQ 731

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  A        + VD  +N +  T+                + +C+ C
Sbjct: 732 NTYDAKK--DGDDENVDKLINELLTTE----------------EEDCDSC 763


>gi|251780295|ref|ZP_04823215.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084610|gb|EES50500.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 741

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/793 (30%), Positives = 378/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYD----GLSESDLETALIFSSRTLIEK-EPNY 216
           L+ + + A  G++D        +  K +      G+  +D+  +LI  S  L    EPN+
Sbjct: 2   LKKLCDLAIEGIKDNDGMYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V     K      +  +   Y E+     E  +    + E+    
Sbjct: 62  QYAASTIYIYELYDKV----RKNRNLDINKNLYDNYYEFIKELTERNLYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK 335
           D++ L  ++K ERDF F Y G++++  RY +   N   IE+PQ  FM +AM LA+ E ++
Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+ +  
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYSLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                       + +  VCNL 
Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      N    D+L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVLND---DELEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G +  
Sbjct: 531 HHMLANNKIHWTEEKHRIFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNGNY-- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                         +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 589 ------------FELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++                                            + +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAP-------------------------------NLSEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY   + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVEKST 915
           +RS+S    E  +
Sbjct: 726 VRSKSLEVTECES 738


>gi|319785672|ref|YP_004145147.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464184|gb|ADV25916.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 814

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/801 (31%), Positives = 371/801 (46%), Gaps = 94/801 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
             ++F+  RLE  ++   +G    ++         +      LS  DL   LI  +   +
Sbjct: 61  RRLAFDPARLERSIDVIAAGFPQLEIGDYKRAVLGFVARKPALSADDLVDHLIREAEARV 120

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P + +  AR  L +L +           +   ++    Y  Y        + G+ +
Sbjct: 121 DLTAPEWERFAARLYLRRLYKRA--------SRNRFYDAGQKYGSYVGLQESLADRGIYS 172

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             +  +    +L      ++ ERD  F Y GL +L  RY       +  E+PQ  ++ +A
Sbjct: 173 NDILRAYSKEELEEAGRMIEPERDKLFAYNGLYLLATRYLATDTARNVYELPQERWLTIA 232

Query: 326 MGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           + L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L G
Sbjct: 233 LYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLQNAGKVGGQLSSCFIDTVDDSLQG 292

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +  + A ++K  GG+G     VR  GA I G    S GV+P++K  N+TAV+V+Q G
Sbjct: 293 IYDSNTDIARVSKGGGGVGAYLGYVRAAGAPIRGVPNSSGGVVPWIKQLNNTAVSVDQLG 352

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGAV  YL+ WH D+E FLDLR N GD R R HD+ TA  IPDLFM+ V +   W LF
Sbjct: 353 QRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDLFMEAVERRGDWYLF 412

Query: 503 SPDEVSDLHDLYGKEF--EIAYE-----NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            P EV      Y ++F  E   E      Y+   + G I   R + A+ L+++++    E
Sbjct: 413 DPHEVKQAKGWYLQDFYDERRGEGSFRSKYQELVEDGRIG-RRTVKAIDLFKRIMVSQLE 471

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------------EE 596
           TG+P++ ++D  N ++P +H G V+SSNLCTEI  N S                     +
Sbjct: 472 TGNPFMFYRDEVNRKNPNKHCGTVYSSNLCTEILQNQSPTRMIQEVISGNQIVTTRQAGD 531

Query: 597 TAVCNLGSINLLAHFA--NNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             VCNL SINL       + Q D   D L   +   VR+LDNVID+N   + +A  +N  
Sbjct: 532 FVVCNLSSINLGRAVVQADGQGDLISDVLERLVPIQVRMLDNVIDLNQLPVPQATITNRR 591

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L L  I + S EA + +D   E I+  AI AS+ELA+E+G Y +F 
Sbjct: 592 YRAIGLGTFGWHHLLALKGIHWDSKEAEDYSDALYERINRLAIQASMELAKEKGTYPAFP 651

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +  +                 +   W +L  +V   G+RN   +A+AP  + 
Sbjct: 652 GSDWHTGAYFRE--------------RGYNSPEWLDLAAQVAVNGLRNGWLLAVAPNMST 697

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G S SIDP Y   Y +        V    L  E                       
Sbjct: 698 AQIAGSSASIDPVYSAFYYEEKKDYRRPVAAPGLSLET---------------------- 735

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                          A+++D    +   +RRQ+ +DQA S NLY+        L  ++ +
Sbjct: 736 --------WPYYEKGAWKVDQFASVRQNARRQRHVDQAISFNLYVPSSIRASVLLELHLE 787

Query: 892 AWLMGLKTTYYLRSRSATSVE 912
            W  GLKTTYY+RS      E
Sbjct: 788 GWRQGLKTTYYVRSNDIDVAE 808


>gi|187933383|ref|YP_001884519.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721536|gb|ACD22757.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 741

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/793 (30%), Positives = 376/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYD----GLSESDLETALIFSSRTLIEK-EPNY 216
           L  +   A  G++D        +  K +      G+  +D+  +LI  S  L    EPN+
Sbjct: 2   LRKLCNLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDMEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V        +K  +      Y E+     E+      + E+    
Sbjct: 62  QYSASTVYIYELYDKVRKNRNLDVKKNLYDN----YYEFIKELTEKNFYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK 335
           D++ L  ++K ERDF F Y G+ ++  RY +   N S IE+PQ  FM +AM LA+ E ++
Sbjct: 118 DILELEKEIKPERDFLFNYSGIDLVTKRYLVQDFNRSVIELPQQMFMGIAMHLAIPEVKE 177

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+ +  
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNAK 357

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYSLEDFYGEEWETKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDN 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                       + +  VCNL 
Sbjct: 414 ANKMNPNKHKGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYNVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      N    ++L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVLND---EELECVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G +  
Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYEKINYYSIKASMNLSKEKGKYELFEGSDWDNGNY-- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                         +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 589 ------------FELRDYNDEKWIDLKQEVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++                                            + +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAP-------------------------------NLSEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY   + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGIRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVEKST 915
           +RS+S    E  +
Sbjct: 726 VRSKSLEVTECES 738


>gi|113200700|ref|YP_717863.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
 gi|76574599|gb|ABA47164.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
          Length = 767

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 206/830 (24%), Positives = 350/830 (42%), Gaps = 90/830 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++   GT  + +  ++  +VE AC GL  VS   V        +DG+   D++  LI
Sbjct: 6   TINVIKRSGTAETLDLDKIHTMVEHACKGLAGVSESQVEMNANLQFFDGVETKDIQEILI 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V            H +      E+  + IE 
Sbjct: 66  RSANDLISLEAPNYQFVAARLLLFGLRKAVYNG---------HPDGHPPLKEHVEKCIER 116

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
           GV  + +     D +   L + + ++RD+ F Y G++ + D+Y +     G   E PQ  
Sbjct: 117 GVYDKTILSKYTDEEWDKLNSFMDHDRDYLFTYAGIRQVVDKYLVQDRSTGEIYETPQFM 176

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   +    + +   ++YN +S       TP +    T   Q +SC L  V D
Sbjct: 177 YMMIAATLFQDDDPFYRIEYVKKYYNAISKHRLNIPTPVMAGVRTTLRQFASCVLVDVDD 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I        GV+PFLK    T    
Sbjct: 237 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRDGEVVHTGVVPFLKKFESTVRCC 296

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F +R   N  
Sbjct: 297 TQNGIRGGSATVHFPIWHTEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIANKD 356

Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G  EF+  Y  YE+ +   +    ++I+A  L   +L    ETG
Sbjct: 357 ISLFSPHDVPGLYDAFGTPEFDDLYTQYEQDSSIPK----KRINAQELILDLLKERAETG 412

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 413 RLYIMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINVGKL 470

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            + ++ D          AVR LD++ID   + I+ A+ S    R++G+G +G    L   
Sbjct: 471 KSLDEID-----ELCELAVRGLDSLIDYQGYPIKAAEISTLNRRSLGIGFIGLAHYLAKH 525

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y SP+A ++  +  E   +  + AS  +A E+G    F  + +  G+ PID+     
Sbjct: 526 GAKYNSPKAYKLVHDLTERFQYALLIASNRMAMEKGPCGYFDKTKYSDGILPIDTYK--- 582

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  D++  N  S   W+ L++R+K  G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 583 KEIDDIVSNDLS-CDWEFLRERIKQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 641

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    +     +     DL     + D+  ++G                     
Sbjct: 642 IKKSKKGPLKQIVPQFNSLKANYDL-----LWDMPSNEG--------------------- 675

Query: 851 IDPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK----KLDFIYRQAWLMGLKTTYYL 903
                 I+  S  QK+ DQA S N      + P+ +    ++       +  G KT+YY 
Sbjct: 676 -----YIKIVSVMQKFFDQAISGNWAYNPENYPNNEVPVSEMAKDLLTTYKYGWKTSYYQ 730

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  A                  P+ + +     L      + + +C+ C
Sbjct: 731 NTYDA--------------KKDAPI-EESGDVDKLINEILQSEEDDCDSC 765


>gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 502

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 305/505 (60%), Positives = 374/505 (74%), Gaps = 21/505 (4%)

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE 
Sbjct: 1   NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60

Query: 528 QA-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCT
Sbjct: 61  LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EITLN++ +E AVCNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +A
Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERG
Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           AY +F+GSLW +G+ P+DS  +L E R E  ++++    L W  ++ RV+  G+RNSN M
Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 477

Query: 942 ------------SSCTSDTECEVCQ 954
                       +    + +CE CQ
Sbjct: 478 EAAPAGPAPVPKACAIDEPDCEACQ 502


>gi|326783481|ref|YP_004324016.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004984|gb|ADO99374.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 769

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 205/835 (24%), Positives = 341/835 (40%), Gaps = 99/835 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G     +  ++  + E AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRSGEKTPLDLDKIHAMAEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V            H +      E+  + ++ 
Sbjct: 67  RSANDLISLESPNYQFVAARLLLFSLRKAVYNG---------HPDGHPPLLEHVKKCVDL 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
           GV    +       +   L + + ++RD+ F Y G++ + D+Y +    +G   E PQ  
Sbjct: 118 GVYDDGILSKYSKEEWEKLNSFMDHDRDYLFTYAGIRQVADKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   + +  + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 238 TLDSIFSSDMAIGHYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++++ + L+ N G +  R   ++ +     LF +R   N  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIQDIIVLKNNKGTEDNRVRKLDYSIQFSKLFYERFISNGI 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y +YE           + I A  L   +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDSLYVDYESDLSIPR----QTIGAQELILSLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 414 RIYIMNIDHCNTHSSFK--DKVNMSNLCQEITLPTDPINHIDGLGEIALCILSAINVGKL 471

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +      D+L      AVR LD +ID   + ++ A+ S    R++G+G +G    L   
Sbjct: 472 KS-----LDELDELCELAVRGLDALIDYQQYPVKAAENSTKNRRSLGIGFIGLAHYLAKH 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYK--- 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DE+  N  S   W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 KEVDEIVPNDLS-CDWEYLRGRIVEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642

Query: 791 VKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           VK +  G    +   +   +     LW      D+  +DG                    
Sbjct: 643 VKKSKKGPLKQIVPSYTTLKGAYTLLW------DMHNNDG-------------------- 676

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY 902
                  I+  +  QK+ DQA S N   +  +          +       +  G KT+YY
Sbjct: 677 ------YIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYY 730

Query: 903 LRS----RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +    +    VE++                   S  +L        + +CE C
Sbjct: 731 QNTYDNKKDGDEVEQT------------------PSVDNLIDQLITEEEDDCESC 767


>gi|16804194|ref|NP_465679.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes EGD-e]
 gi|46908388|ref|YP_014777.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091824|ref|ZP_00229619.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|47095729|ref|ZP_00233335.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500180|ref|ZP_03668529.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes Finland 1988]
 gi|224501046|ref|ZP_03669353.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL R2-561]
 gi|226224762|ref|YP_002758869.1| ribonucleoside-diphosphate reductase, subunit alpha [Listeria
           monocytogenes Clip81459]
 gi|254825282|ref|ZP_05230283.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|254826955|ref|ZP_05231642.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|254831408|ref|ZP_05236063.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 10403S]
 gi|254853281|ref|ZP_05242629.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|254899144|ref|ZP_05259068.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J0161]
 gi|254912715|ref|ZP_05262727.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|254931733|ref|ZP_05265092.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|254937042|ref|ZP_05268739.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|255519997|ref|ZP_05387234.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-175]
 gi|284802602|ref|YP_003414467.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284995744|ref|YP_003417512.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|300764037|ref|ZP_07074033.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|16411625|emb|CAD00233.1| lmo2155 [Listeria monocytogenes EGD-e]
 gi|46881659|gb|AAT04954.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47015872|gb|EAL06799.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47019835|gb|EAL10573.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877224|emb|CAS05938.1| Putative ribonucleoside-diphosphate reductase, subunit alpha
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599336|gb|EEW12661.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|258606641|gb|EEW19249.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|258609645|gb|EEW22253.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|284058164|gb|ADB69105.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284061211|gb|ADB72150.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|293583288|gb|EFF95320.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|293590710|gb|EFF99044.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|293594528|gb|EFG02289.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|300515378|gb|EFK42429.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|328465962|gb|EGF37143.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 1816]
 gi|332312606|gb|EGJ25701.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 763

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/800 (31%), Positives = 374/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E YE      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVAD-ETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 738 WNEGLKTTYYVRSNDIDVEE 757


>gi|326782197|ref|YP_004322598.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004404|gb|ADO98797.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 766

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 208/788 (26%), Positives = 340/788 (43%), Gaps = 79/788 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N +++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   ITVIKRNGDKDSLNLEKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIETSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR++             H+E      ++  +  +  
Sbjct: 65  SASDLISLETPNYQYVASRLLLFDLRKQ----------LNDHYEDHPFILDHVKKCADLD 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           V  + + E   + +   + + + Y RD+ F Y G++ + D+Y +    +G   E PQ  +
Sbjct: 115 VYDKTIIEKYTEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A  L  +  ++ +      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 IMIATTLFQQYPKETRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T     
Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R  QN   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMQNKDI 354

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L+D +G  EF+  YE YE      +    + I A  L+  +L    ETG 
Sbjct: 355 SLFSPHDVPRLYDAFGMPEFDALYEQYEAD----DSVPRKTIPARELFNSLLKERSETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610
            +I   D CN  S    +  V+ SNLC EITL +           E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNSHSSF--LDKVNMSNLCQEITLPTDPINHIDDEGGEIALCILSAINVGKI 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +Q D          AVR L+ +ID   + ++ AK+S    R++G+G +G    L   
Sbjct: 469 TQLDQMD-----ELCDLAVRALEELIDYMQYPVDAAKRSTLARRSLGIGYIGLAHYLAKN 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y  PEA ++  +  E   +H + AS ELA+ERGA   F+ + +  GV PID+     
Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNELAKERGACEGFRHTKYSNGVLPIDTYK--- 580

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DEL  N+ +   W  L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 581 KEVDELVENKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                      LK  +   ++
Sbjct: 640 VKKSKKGPLKQIVPGY--------------------------------PHLKNNYTLLWD 667

Query: 851 I-DPMWLIESASRRQKWIDQAQS-------LNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           + D    I+  +  QK+ DQA S        N   +E     +     + +  G KT+YY
Sbjct: 668 MKDNSGYIKVTAVIQKFFDQAISGNWSYNPQNYPNNEVPMSVMTKDLIETYKYGWKTSYY 727

Query: 903 LRSRSATS 910
             +  A S
Sbjct: 728 QNTYDAKS 735


>gi|239628851|ref|ZP_04671882.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518997|gb|EEQ58863.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47FAA]
          Length = 751

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 231/780 (29%), Positives = 370/780 (47%), Gaps = 100/780 (12%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLR 229
            GL+     ++   +       ++  +   ALI S+  L  +E P +    AR    +  
Sbjct: 34  YGLE-----LLFERSRAFEKAHMTAEEHMEALIRSAAELTSREAPRWEFAAARLRYCQFE 88

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +EV   +      + + +++ L         ++G+    + E+    ++      ++ ER
Sbjct: 89  QEVKERLGTLGIASLYDKLKYL--------TDQGLYGAYILENYSREEIAQAQGFIREER 140

Query: 290 DFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           +  F Y GL +L  RY +       +E PQ  ++ +A+ LA+KE +  +      FY++L
Sbjct: 141 NCLFTYAGLDLLLKRYVIQDRERHGLETPQEMYLGIALHLAMKEKKDVRMEWVRRFYDML 200

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S      +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  
Sbjct: 201 SQIKATMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSVDNFAQVSKFGGGMGLYFGK 260

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  G+ I G  G + GVI ++K+ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR
Sbjct: 261 VRATGSSIRGFKGAAGGVIRWIKLVNDTAVAVDQLGMRQGAAAVYLDAWHKDLPEFLQLR 320

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFE 519
            N GDDR + HD+      PDLF K   +  +  W L  P E+       L D YG+E+E
Sbjct: 321 TNNGDDRMKAHDIFPGVCYPDLFWKLAEESLDQDWYLMCPHEIEAVKGYCLEDSYGEEWE 380

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y +  +     +    R +    + R +L    ETG P+   +D  N  +P  H G++
Sbjct: 381 ERYWDCVKD----QRISKRTVLLKDVVRLILKSAVETGTPFAFNRDIVNRANPNSHKGMI 436

Query: 580 HSSNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQF 616
           + SNLCTEI  N S                         +  VCNL S+ L      +  
Sbjct: 437 YCSNLCTEIAQNMSPVESVSTEILNREGDTVIVNTTRPGDFVVCNLASLCLGNIDVTSDS 496

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + +++   + TAVR LDNVID+N + +  AK +N  +R+IGLG+ G+   L    I + S
Sbjct: 497 EVEEI---VSTAVRALDNVIDLNFYPLPYAKVTNARYRSIGLGVSGYHHMLAKHRIRWES 553

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E +  AD+  E I++ AI AS  L  E+G+Y  F+GS W  G +               
Sbjct: 554 EEHLAFADQVFERINYAAIRASSALGAEKGSYEYFEGSQWQSGEYFKK------------ 601

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD L  +V   GMRN+  MA+APT++ + + G +  +DP  +  +++   +
Sbjct: 602 --RGYEGGRWDGLAAQVAAQGMRNAWLMAVAPTSSTSILSGTTAGLDPVMKRFFLEEKKN 659

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                +   +  EL     W                           ++ +A+ ID  + 
Sbjct: 660 ----SIMPRVAPELDISTFW---------------------------LYKSAYTIDQTYT 688

Query: 857 IESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + +A  RQ+ IDQAQS+NLY  +E + ++L  +Y  AW  G+KT YY+RS+S    E  +
Sbjct: 689 VRAAGVRQRHIDQAQSVNLYITNEYTMRQLLNLYILAWEQGVKTIYYVRSQSLEVEECES 748


>gi|212224967|ref|YP_002308203.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
 gi|212009924|gb|ACJ17306.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
          Length = 910

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 212/928 (22%), Positives = 386/928 (41%), Gaps = 139/928 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V  +         + + N   + V + +     
Sbjct: 5   KVMKRDGRIVPFDKERIKWAIQRAMLEVGVRD--------EKLLNRVVRRVVKRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM+ G   + + Y+LYR++++++R  +                 
Sbjct: 57  GQVPHIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIREEKKKI-------------- 102

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                   N  +L+ I +                              +    + +SR L
Sbjct: 103 -------LNKDKLDEIDKRFS---------------------------INALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  E                      + + P++     +  L       Y E        
Sbjct: 129 IRNE-------------------KGEIIESPRELF-ERVATLVVIPDLLYDERVFDREGN 168

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM--G 327
           HE  +     Y+    +Y+R  +   +G   L   +F  +     E+ Q   M+V++   
Sbjct: 169 HEQDLSNVEKYMEKLDEYDRKLS---IGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEV 225

Query: 328 LALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + + E     + E    E++ L++S  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 IGMLENGAFDKYEDEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 286 MKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 345

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    LE WH D+E+F+  ++          + N +  I   F + + +   + L +
Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIG-TNVLANFNISVGIWSDFWEALREGKRYPLIN 404

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P                                 ++I   +L+ ++  M +    P + F
Sbjct: 405 PRTGE---------------------------KVKEIDPKSLFEELAFMAWAKADPGVIF 437

Query: 564 KDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----F 616
            D  N R+  +      + ++N C E  L     E   CNL SINL      ++     F
Sbjct: 438 FDVINRRNVLEPAKGEKIRATNPCGEEPLY----EYESCNLASINLAKFVKYDEEGKPYF 493

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+ A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L I Y S
Sbjct: 494 DWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNS 553

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E  +   ++ E+++F+A   SVE A++RG +  ++ + +  G  P++            
Sbjct: 554 KEGYDFMRKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGY---------- 603

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                  LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   
Sbjct: 604 YHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTV 663

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F  V+     ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ +I  +  
Sbjct: 664 GEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWLDH 723

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SV 911
           I + +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    SV
Sbjct: 724 ILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSV 783

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           E    + V  K +A  V    +   +  
Sbjct: 784 EGEKRQRVKAKPSAYAVEKLKAVVEAEP 811


>gi|126658927|ref|ZP_01730069.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126619725|gb|EAZ90452.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 768

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/835 (27%), Positives = 379/835 (45%), Gaps = 100/835 (11%)

Query: 124 ERSDVRAAQSHSKSDAPIAP---------KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
           + + + + Q    +D  I P         K+++   DG+  + N  ++  +V  AC+  +
Sbjct: 2   QPTVITSPQQTHHNDTHITPSYHSQLGESKIRVRRRDGSWTALNIGKIRAVVNWACAE-K 60

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL 233
           DV+S  + +     + DG++  +++  LI  +  +    EP++  V  R  +  L ++ L
Sbjct: 61  DVNSIALEAGLTTRLRDGITTREIQDNLINCALEMCSPNEPDWRYVAGRLHIWSLWKDTL 120

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
                             Y       +E G     L       +L    + +  + D  +
Sbjct: 121 ---------VNRGYQYGNYETTVKTKVETGQYDNRLLTY-SKTELKEAGSWINPDWDTDY 170

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHF 351
           +Y G  +L  RY L       E+PQ   +  A+ LA  E+ + +   A  FY  ++    
Sbjct: 171 DYAGAVLLTSRYLL-----PEELPQEALLSCALLLATVESPENRLPWAKRFYEAIARRKV 225

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TP L N       L+SCF+ ++ D+L  IF  +   A ++K  GG+G + + +R  G
Sbjct: 226 SLATPILANLRVPGGSLTSCFILSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATG 285

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + + G N  S G+IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD
Sbjct: 286 SWVMGKNNASGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGD 345

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYE 526
            RR+ +D+     + D FM+RV     WTL  P EV +     L +L+G++FE AY   E
Sbjct: 346 QRRKAYDVFPQLILTDEFMRRVENKEQWTLVDPYEVREKLGIELAELWGEKFEEAYRLIE 405

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            + DR EI ++++++A  L++ ++    ETG P++ FKD  N  +P +HVG +   NLCT
Sbjct: 406 AEIDR-EITLYKRVNARELFKTIMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCT 464

Query: 587 EITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E   N +  +E   CNL S+NL         + D+L    + AVR+LDN IDI     + 
Sbjct: 465 ESFSNVTPGKEAHCCNLVSLNLAN------IEEDELNYLCKIAVRILDNTIDITNPPFDD 518

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK  N  +R IG+G MG    L    + Y +   +       E + +     S+ELA+ER
Sbjct: 519 AKSHNDRYRTIGVGCMGLADWLAKQGLTYEN---IAEISNIFEEVGYWCTQTSMELAKER 575

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             Y +F GS W +G+       + ++  +    N   +  W +L + +KT G+RNS+  A
Sbjct: 576 SPYDAFAGSDWSKGLL------IGSKPVNWFVENANKKERWIQLSEDIKTYGIRNSHITA 629

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAP  + + + G + SI P Y   +      G   +   F+                   
Sbjct: 630 IAPNTSSSLVQGCTASILPVYSRFFYDKWAKGTVPIAPPFI------------------- 670

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------Y 876
                         D    +     ++   ++++ S  Q+WID   S+ L         +
Sbjct: 671 -------------KDSFWFYHENKTLEQQKVVKAVSTIQQWIDTGISMELLFNLNQGVYF 717

Query: 877 LDEP----SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            +EP    + K +      AW  G K  YY+R+     V+K   K  D    A  
Sbjct: 718 PNEPERCLTAKDIFETLLLAWKEGCKAIYYVRT-----VQKDDFKESDNNCTACA 767


>gi|319655056|ref|ZP_08009125.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317393251|gb|EFV74020.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 740

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 354/742 (47%), Gaps = 81/742 (10%)

Query: 196 SDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +    I    + I   EP++    +R LL+KL  E       +P     H     +  
Sbjct: 39  EAMYDQFILDCLSFISIDEPDWTFAASRLLLKKLYTESGKNRECQPDDCYKH-----FYT 93

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
              R    G+  + L +     ++  LA  +K E D  F YLGL++L DRY         
Sbjct: 94  LIERLTALGIYDQDLLDVYSKDEINELAQFIKKENDRLFTYLGLKMLADRYLARDKQKNL 153

Query: 314 IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E+PQ  FM ++M L  +E +  + +   E Y  +S  +   +TPTL N+G    QLSSC
Sbjct: 154 YELPQERFMIISMVLMKREPKGKRLELIKEAYWAMSGLYMTVATPTLANAGKNWGQLSSC 213

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+ TV D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  
Sbjct: 214 FIETVDDSLDSIYDSNTDIASLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVIPWMKQL 273

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   IPDLFM+
Sbjct: 274 NNTAVSVDQLGQRQGAISVYLDVWHKDIFSFLDAKLNNGDERQRTHDLFTGVCIPDLFME 333

Query: 492 RVTQNAGWTLFSPDEVSD-----LHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVAL 545
           +V     W LF P EV       L D Y + E E ++    ++          K+ A+ +
Sbjct: 334 KVESRGYWYLFDPHEVRKVMGFSLEDFYDEGEGEGSFRQKYKECIDNPNLSREKVPAIDI 393

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------ 593
            + ++    ETG P++ ++D  N ++   H G+++ +NLCTEI  N S            
Sbjct: 394 MKSIMRSQLETGTPFMFYRDEVNRKNANSHCGMIYCTNLCTEIVQNQSVTKRVEEYTRDG 453

Query: 594 -------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                    +  VCNL SINL    +        L   +   VR+LDNVIDIN   + + 
Sbjct: 454 RIIIEKHPGDFVVCNLSSINLARAISEGV-----LERLVPIQVRMLDNVIDINSIPVPQG 508

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + +N  +RAIGLG  G+   L L  I + S EA + AD   E I+F AI +S++LA+E+G
Sbjct: 509 QITNQKYRAIGLGTFGWHHLLALKKITWESEEAEKFADILYEQIAFLAIKSSMDLAKEKG 568

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +YS+FKGS W+ G +      L AE          S + W  L K V   G+RN+  +A+
Sbjct: 569 SYSAFKGSDWETGAYFEKRGYLEAE----------SDMDWAALSKEVSENGVRNAYLLAV 618

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           AP A+ A I G + SIDP +   Y +        V                         
Sbjct: 619 APNASTALIAGSTPSIDPIFNKQYSEEKKDYRIPVTAP---------------------- 656

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                     I  +    + +A+ I+  W I   + RQK IDQA S N Y  +      L
Sbjct: 657 ---------DINSETIWYYKSAYHINQEWSIRQNANRQKHIDQAISFNFYIPNHIKAIDL 707

Query: 886 DFIYRQAWLMGLKTTYYLRSRS 907
             ++  AW   LKTTYY+RS S
Sbjct: 708 LNLHLSAWKKKLKTTYYIRSTS 729


>gi|326783255|ref|YP_004323799.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005202|gb|ADO99591.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 770

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 203/791 (25%), Positives = 333/791 (42%), Gaps = 86/791 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  DG     N  ++ ++VE AC+GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIQVIKRDGVSEPLNLDKIHVMVEHACNGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V            H        E+  R +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFSLRKAVYNG---------HPNGHPPLREHVERCVSR 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
            V    +     D +   L + + ++RD+ F Y G++ + D+Y +    +G   E PQ  
Sbjct: 118 SVYDASILSKYTDEEWEKLNSFMDHDRDYLFTYAGVRQVVDKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   + +  + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMIAATLFQDDDKFYRLEYVKKYYDAISKHRINIPTPVMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+   I G   +  GV+PFLK    T    
Sbjct: 238 TLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINTKIRGGEVQHTGVVPFLKKFESTVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  LF +R   N  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIANGE 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y  YE      E    + I A  L+  +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDDLYVRYESD----EFTPRKTIGAQELFLSLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINLLA 609
             ++   D CN  S  +    V+ SNLC EI         ++    E A+C L +IN   
Sbjct: 414 RLYLMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPISHIDDPKGEIALCILSAIN--- 468

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+L      AVR LD +ID   + +E AK+S    R++G+G +G    L  
Sbjct: 469 --VGKLKNLDELDELCDLAVRGLDALIDYQEYPVEAAKQSTTNRRSLGVGYIGLAHYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y + +A ++  +  E   +  ++AS  LA E+G    F  + +  G+ PID+    
Sbjct: 527 HGANYDTYKAQDLVHKLSERFQYALLTASNRLAMEKGPCGYFGKTKYADGILPIDTYKND 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               DE+  N   +  W+ L+ R+K  G+RNS   A  P+ + + +   +  I+P    L
Sbjct: 587 ---VDEIVPND-LQCDWEFLRGRIKEYGLRNSTLSAQMPSESSSVVSNATNGIEPPRAYL 642

Query: 790 YVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            +K +  G    +   +   +     LW      D+  +DG                   
Sbjct: 643 SIKKSKKGPLKQIVPQYSTLKNAYTLLW------DMPNNDG------------------- 677

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK--------KLDFIYRQAWLMGL 897
                   I+  +  QK+ DQA S N        P  +         L   Y+  W    
Sbjct: 678 -------YIKVTAVMQKFFDQAISGNWSYNPEMYPDNEVPVSVMAQDLLNTYKYGW---- 726

Query: 898 KTTYYLRSRSA 908
           KT+YY  +  A
Sbjct: 727 KTSYYQNTYDA 737


>gi|169347148|ref|ZP_02866090.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296831|gb|EDS78960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 743

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSVMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|168205190|ref|ZP_02631195.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170663300|gb|EDT15983.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 743

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSTMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|28198392|ref|NP_778706.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa Temecula1]
 gi|182681035|ref|YP_001829195.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M23]
 gi|28056462|gb|AAO28355.1| ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa Temecula1]
 gi|182631145|gb|ACB91921.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylella
           fastidiosa M23]
 gi|307579503|gb|ADN63472.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 830

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 234/800 (29%), Positives = 361/800 (45%), Gaps = 97/800 (12%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
             + F+  RLE  ++        +         +  +   D ++  DL   LI  + + +
Sbjct: 72  RRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLIREAESRV 131

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P +    AR  L +L +           +   ++    Y  +        +  + +
Sbjct: 132 DLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESLADRNIYS 183

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVA 325
             +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ  ++ +A
Sbjct: 184 NDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDTSRGVFELPQERWLTIA 243

Query: 326 MGLALKETE--------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           + L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 244 LYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSSCFIDTVD 303

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K  N+TAV+
Sbjct: 304 DSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQLNNTAVS 363

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +  
Sbjct: 364 VDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRG 423

Query: 498 GWTLFSPDEVSDLHDLYGKEF--------EIAYENYERQADRGEIKVFRKISAVALWRKM 549
            W LF P EV  +   Y ++F          ++          E    + + A+ +++++
Sbjct: 424 DWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKAIDIFKRI 483

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594
           +    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N +                
Sbjct: 484 MVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMISGNQIVT 543

Query: 595 ----EETAVCNLGSINLLA--HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL        +    D L   I   VR+LDNVID+N   + +A  
Sbjct: 544 TKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLLPVPQATI 603

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+ELA+E+G Y
Sbjct: 604 TNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMELAKEKGTY 663

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F GS W  G +                    +   W EL  +V   G+RN+  +A+AP
Sbjct: 664 AVFPGSDWQTGEY--------------FRARDYNSPQWLELAAQVAVNGVRNAYMVAVAP 709

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        VV   L                      
Sbjct: 710 NMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAPGLSL-------------------- 749

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
                     D        A+++D    I   +RRQ+ +DQ+ S N Y+        L  
Sbjct: 750 ----------DTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPSTIRASTLLD 799

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           ++  AW  GLKTTYY+RS  
Sbjct: 800 LHMTAWREGLKTTYYVRSND 819


>gi|209523558|ref|ZP_03272112.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
 gi|209495963|gb|EDZ96264.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
          Length = 752

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/814 (26%), Positives = 376/814 (46%), Gaps = 89/814 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +D P   +++++  DG+L   +  R+  +V  AC GL D +   + +     + +G++
Sbjct: 6   TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64

Query: 195 ESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +++  LI  +  L    +P++  V  R  +  L ++ L +   + +          Y 
Sbjct: 65  TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YC 115

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           +     ++ G     L +   D  L    + +  + D  ++Y G  +L  RY L      
Sbjct: 116 QTVTSKVKSGQYDARLLKYTPD-QLREAGSWINPQWDKDYDYAGAVLLTKRYLL-----P 169

Query: 314 IEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E+PQ   +  A+ LA+ E  +++   A +FY  ++      +TP L N    +  LSSC
Sbjct: 170 EELPQEALLSCALLLAVVEAPEKRMFWAQKFYQAIALRQISLATPILANLRIPNGSLSSC 229

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+  + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP++K+ 
Sbjct: 230 FIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLL 289

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D FM+
Sbjct: 290 NDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMR 349

Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           RV     WTL  P EV      +L +L+G+EFE AY+  E  +   E+K++++I+A  L+
Sbjct: 350 RVRNCENWTLIDPYEVRVKLGIELSELWGEEFESAYQKIEA-SLDYELKLYKRINARELF 408

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           + ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L    
Sbjct: 409 KNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTC 463

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            L     +  D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG    
Sbjct: 464 NLNSLNLSNLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQRYRTIGVGVMGLADW 523

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+    ++      E I F+    S+EL++ERGAY +F GS W QG       
Sbjct: 524 LAKRRFSYS---HLQEISNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL----- 575

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            + A+  D    +   +  W EL + ++  G+RNS+  AIAP  + + + G + S+ P Y
Sbjct: 576 -IGAKPVDWFLTHADDKHRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCY 634

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              +      G   +   F+ +     + W                            + 
Sbjct: 635 SRFFYDKWAKGTVPIAPPFIKD-----NFW---------------------------FYP 662

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEPS----GKKLDFIYRQAW 893
               +D   ++++ +  Q+WID   S+ L         + +EP+     K +      AW
Sbjct: 663 ENKTLDQQIVVKAVAAMQQWIDTGISMELMFNLNQGVYFPEEPARSLKAKDIFDTLMAAW 722

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
             G K  YY+R+     V++ + +  D    A  
Sbjct: 723 EQGCKAIYYVRT-----VQRDSFQESDDACTACA 751


>gi|326784481|ref|YP_004325028.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004514|gb|ADO98906.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 767

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 203/793 (25%), Positives = 336/793 (42%), Gaps = 75/793 (9%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
             ++    ++K++  DG   + N +++  +VE AC GL  VS   V   +    +DG+  
Sbjct: 1   MEESMTPTEIKVVKRDGEQTTLNLEKVHKMVEHACEGLAGVSESAVEINSGLQFFDGIET 60

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            D++  LI S+  LI  E PNY  V AR LL  LR+ V            H +   +  +
Sbjct: 61  KDIQEILIRSANDLITLENPNYQYVAARLLLFGLRKSVYNG---------HPDKHPILKD 111

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGS 312
           +    I++GV    +     + +   L   + ++RDF F Y G++ + D+Y +     G 
Sbjct: 112 HVENCIKKGVYDGEVLAKFNEEEWEKLNGYIDHDRDFLFTYAGIRQVTDKYLVQDRSTGE 171

Query: 313 RIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E PQ  +M +A+ L   + +  + +   ++Y+ +S       TP +    T   Q +S
Sbjct: 172 IFETPQFMYMMIAVTLFQDDDKFYRLEYIKKYYDAISKHKINIPTPIMAGVRTPIRQFAS 231

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L  + D L  IF              G+G +   +RG+ + I G   +  GV+PFLK 
Sbjct: 232 CVLVDLDDTLDSIFSGDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKK 291

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
              T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F 
Sbjct: 292 LESTVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFY 351

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +R   N   TLFSP +V  L+D +G + F+  Y  YE      E      ISA  L   +
Sbjct: 352 ERFITNGTITLFSPHDVPGLYDAFGSDSFDELYTQYESD----ESIPKSTISAQELILDL 407

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNL 602
           L    ETG  ++   D CN  S  +    V  SNLC EITL +          E A+C L
Sbjct: 408 LKERAETGRIYLMNIDHCNSHSSFK--DKVSMSNLCQEITLPTDPLQHIDGNGEIALCIL 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+           D+L      AVR LD +ID   + ++ A++S    R++G+G +G
Sbjct: 466 SAINVGKINK-----LDELDELCDLAVRGLDALIDYQQYPVKAAEQSTKNRRSLGIGFIG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L   +  Y SPEA ++  +  E   +  +++S  L+ E+G    F  + +  G+ P
Sbjct: 521 LAHYLAKNNAKYESPEAYDLVHKLTERFQYALLTSSNRLSMEKGPCGYFGKTKYADGILP 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +  DE+  N  S   W+ L+ R+   G+RNS   A  P+ + + +   +  I
Sbjct: 581 IDTYK---KDVDEIIPNDLS-CDWEFLRGRISEYGLRNSTLSAQMPSESSSVVSNATNGI 636

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    L +K +  G    V                          GS+ N   +  D+ 
Sbjct: 637 EPPRDYLSIKKSKKGPLKQVVPSY----------------------GSLKNNYTLLWDMP 674

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLM 895
                    D    I   +  QK+ DQA S N   +  +          +       +  
Sbjct: 675 ---------DNTGYINVVAIMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKY 725

Query: 896 GLKTTYYLRSRSA 908
           G KT+YY  +  A
Sbjct: 726 GWKTSYYQNTYDA 738


>gi|110800461|ref|YP_697051.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens ATCC 13124]
 gi|168216674|ref|ZP_02642299.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
 gi|110675108|gb|ABG84095.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens ATCC 13124]
 gi|182381125|gb|EDT78604.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
          Length = 743

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|16801323|ref|NP_471591.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           innocua Clip11262]
 gi|16414771|emb|CAC97487.1| lin2259 [Listeria innocua Clip11262]
          Length = 763

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 374/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 738 WNEGLKTTYYVRSNDIDVEE 757


>gi|217963684|ref|YP_002349362.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290893102|ref|ZP_06556090.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
 gi|217332954|gb|ACK38748.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290557264|gb|EFD90790.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
          Length = 763

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 374/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 738 WNEGLKTTYYVRSNDIDVEE 757


>gi|18311343|ref|NP_563277.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens str. 13]
 gi|18146027|dbj|BAB82067.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           perfringens str. 13]
          Length = 743

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGICYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 767

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 203/779 (26%), Positives = 346/779 (44%), Gaps = 47/779 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +          K   Y G++ S 
Sbjct: 2   AELKKHLHVQKRDGTIEKVHYDAITARIKQLCYGLEKIDPAATAIHVIKKFLYAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A   ++ T+    P+Y K+ AR  +  L ++         ++     +  ++  Y  
Sbjct: 62  LDDAAAETAITMATIHPDYEKLAARIAISNLHKQT--------KEKFSDVIDDIHKNY-- 111

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            Y   G+   +    M   D   L   + YE D+  +Y G + L   + +      IE P
Sbjct: 112 NYWNIGLSDDIYEIIMKHKD--RLNEAINYENDYILDYFGFKYLIQHFLVKSENQTIERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-- 375
           Q  FM+VA+G+   + +    A+E Y +LS    M S P +        +L+   ++   
Sbjct: 170 QHLFMKVAVGIHGDDID---SAIETYKMLSQKLCMFS-PVVMQLQPAARKLNVSVISHYS 225

Query: 376 ---VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              + D + GI+      +        +      +R  G +I G+ G+S G+   LK  +
Sbjct: 226 VAMIADSIDGIYDTSIRLSSFILPYSSVALHVHKIRAAGTYIQGSYGESSGLPLMLKQYD 285

Query: 433 DTAVAVNQGGKRKG--AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                     + K    V  Y E WH D+ + +D  + T     +  +   A WIPD FM
Sbjct: 286 SIVRNSETLERPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDEFM 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  W+  SPD    L D++GKEF+  Y+ YE +    +  V R+I A  LW +++
Sbjct: 346 RRVQNDQMWSFMSPDHCPGLIDVHGKEFDNLYKEYELK---SKSFVMRQIEAKKLWSQII 402

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P + FKD CN +S + H+G +  +    +    ++S+E A C   SI++   
Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462

Query: 611 FA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS----NHTHRAIGLGLMGFQS 665
               N FD+ KL  T +     L+ +ID N   + K K+          AIG+G+ G   
Sbjct: 463 LTSENIFDFSKLKETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQWAIGIGVQGLAD 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               +  P+ + EA  +  +  E I + A+ AS ELA   G Y +F  S   +G+   D 
Sbjct: 523 LFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQFDL 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +            ++   W+ LK ++   G+RNS     + T   + ICG   SI+P 
Sbjct: 583 WNVKP----------SNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIEPL 632

Query: 786 YQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             N+  +      +   +  VVN  L+ +L  R LWD+ +   L  + GS+  I+ +P+D
Sbjct: 633 DTNVKRRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLPED 692

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           LK+++ T +EID   LI  A+ R  +IDQ+Q+ +L + +     +  +    W MGLKT
Sbjct: 693 LKQLYKTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLKT 751


>gi|110802610|ref|YP_699621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens SM101]
 gi|110683111|gb|ABG86481.1| ribonucleoside-diphosphate reductase, alpha chain [Clostridium
           perfringens SM101]
          Length = 743

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 226/788 (28%), Positives = 373/788 (47%), Gaps = 95/788 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMEEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV T    +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRTNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL ++ N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIKTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATS 910
           +RS+S + 
Sbjct: 728 VRSKSLSV 735


>gi|168213272|ref|ZP_02638897.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|182625796|ref|ZP_02953563.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
 gi|170715231|gb|EDT27413.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908952|gb|EDT71439.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 743

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K      +A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|168210335|ref|ZP_02635960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711563|gb|EDT23745.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 743

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/793 (28%), Positives = 374/793 (47%), Gaps = 95/793 (11%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    +       + E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +        E      ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGFIKE----LTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEK 335
           D+  L  ++K ERDF F Y G+ +L  RY +       +E+PQ  FM +AM LA+ E ++
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD-- 509
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +  A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIEANWYMMCPHEIKTVK 359

Query: 510 ---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S                         +  VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V       L Q + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPG----LCQENFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+    + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVEKST 915
           +RS+S +  E  +
Sbjct: 728 VRSKSLSVDECES 740


>gi|307571741|emb|CAR84920.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes L99]
          Length = 757

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 374/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 5   IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 65  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 120 GIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 179

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 180 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 239

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 240 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 299

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 300 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 359

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 360 YLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 418

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 478

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 479 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 535

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 536 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 595

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 596 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 641

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 642 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 675

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 676 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 731

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 732 WNEGLKTTYYVRSNDIDVEE 751


>gi|254517516|ref|ZP_05129572.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
 gi|226911265|gb|EEH96466.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
          Length = 743

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 374/773 (48%), Gaps = 91/773 (11%)

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTV 236
            + +L      +   + + ++  ++I  +  L    EP +    AR  + KL  ++    
Sbjct: 24  VERLLEALNHIVRPNMKDEEIRDSIIQVALELTSDMEPRWQNAAARLYVFKLYDKIRKNR 83

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
                +  + ++      +  +  E+G+  + + E+    +++ L N++K ERDF F Y 
Sbjct: 84  EINNDENIYGDLYG----FINKLTEKGLYGKYILENYTREEILELENEIKPERDFLFTYS 139

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC 353
           G+ +L  RY +   + S +E+PQ  FM +AM LA+ E ++ +   A  FY++LSS     
Sbjct: 140 GINLLAKRYLIQDFDRSILELPQQMFMGIAMHLAIPEKKEVRVLWAKRFYDVLSSLKATM 199

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPT+ N+     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR L + 
Sbjct: 200 ATPTMSNARKPFYQLSSCFIDTVQDSLKGIYKSLDNFAEVSKFGGGMGIYIGKVRALESP 259

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL L+ N GDDR
Sbjct: 260 IRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDLPEFLQLKTNNGDDR 319

Query: 474 RRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYE 526
           ++ HD+      PDLF K      +A W +  P E+       L D YG+E+E  Y    
Sbjct: 320 KKAHDVFPGLCYPDLFWKLAETDIDANWYMMCPHEIRLAKGYSLEDFYGEEWEKKYYECV 379

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +    R +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLCT
Sbjct: 380 ED----DSISKRVMSVKEIVRLIIKSAAETGTPFAFYRDTVNKMNPNKHKGMIYSSNLCT 435

Query: 587 EITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           EI  N S                       S +  VCNL S+ L      N    ++L  
Sbjct: 436 EIMQNMSSMDIQQSEVKDENGDTIIIEKTKSGDFVVCNLSSVVLGNIDVKND---EELGY 492

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +      E A
Sbjct: 493 VVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNLIHWTEDSHKEFA 552

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           D+  E I++HAI AS+ +++E+G YS F+GS W  G +                +     
Sbjct: 553 DDVYERINYHAIKASMNISKEKGRYSCFEGSDWHNGNY--------------FELRGYKS 598

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W++L++ V T GMRN   MA+AP  + A I G S+ IDP                   
Sbjct: 599 EKWNQLREEVNTHGMRNGYLMAVAPNGSTATIAGTSEGIDPVMAR--------------- 643

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                       W E     +            + ++    + +A+ ID  W ++    R
Sbjct: 644 -----------FWLEEKKGSIIPKTA-----PNLSEENYWYYNSAYNIDQKWCVQINGIR 687

Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q+ IDQ QS NLY+    + +++  +Y +A   G+K+ YY+RS+S T  +  +
Sbjct: 688 QRHIDQGQSFNLYITTNYTMRQIMNLYIEACKAGVKSIYYVRSKSLTVSDCES 740


>gi|325261083|ref|ZP_08127821.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
 gi|324032537|gb|EGB93814.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
          Length = 763

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/835 (28%), Positives = 386/835 (46%), Gaps = 117/835 (14%)

Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAP----KLKIMMDDGTLISFNSKRLEMIVEEACS 171
           + Y+LYRE R+  R ++     +    P     L  +  D +   +  ++L    +    
Sbjct: 2   KSYILYRERRARRRYSRQRIADEFQAVPGLVGVLTSIQKDFSQEEYELEQLSARFQ---- 57

Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
                            +  GL++ +    L+ +   L  +E P +  + AR  +   + 
Sbjct: 58  ---------------AFLSPGLTDMEKLAVLVKACAELTTQEAPKWEMIAARVRMLSFQI 102

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           ++   +      + + ++  L         E+G+    + E     ++      L  +R+
Sbjct: 103 QLNVQMEAFHIHSFYEKISWL--------TEQGLYGNYILEHYTQAEIEEFGTWLCAKRN 154

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSS 348
             F +  L++L  RY +    G  +E PQ  FM +AM LA+KE  ++      FY++LS+
Sbjct: 155 DLFTFSSLELLLGRYTICGRAGEPLETPQEMFMGIAMHLAMKEKQDRSAWVRRFYDMLST 214

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++KY GG+G  +  VR
Sbjct: 215 LKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDNFAKVSKYGGGMGMYFGKVR 274

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N
Sbjct: 275 ASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTN 334

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GD+R + HD+  A   PD F K+     +  W L  P E+       L D +G+ +E  
Sbjct: 335 NGDERMKAHDVFPAVCYPDYFWKQARDHIDGDWYLMCPHEILTIKGYALEDSFGEAWEEK 394

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +  R     E    R I    + R ++    ETG P+   +D  N  +P  H GV++ 
Sbjct: 395 YLDCVRD----ERIRKRVIPIKDVLRLIIRSAVETGTPFAFNRDTVNKANPNGHKGVIYC 450

Query: 582 SNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L         DY
Sbjct: 451 SNLCTEIAQNMSAIELEEQRTEEVDGETVVVTVTKPGEFVVCNLASLSLGHIDVE---DY 507

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+    +AVR LDNVID+N   +  A+ +N  +R +GLG+ G+   L    I + S E
Sbjct: 508 NELSYITESAVRALDNVIDLNFFPVPYARINNQRYRPVGLGVSGYHHMLAKYGIRWESQE 567

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++ A++    I + A++AS  +A+E+G+Y+ F+GS W  G +      +          
Sbjct: 568 HLDFAEKVFSDIHYAAVNASCSIAEEKGSYAYFEGSAWQTGEYFRQRNLVDDR------- 620

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W++L  RV   G+RN   +A APT++ + I G +  +DP     +++   +G 
Sbjct: 621 -------WEQLAGRVAAFGLRNGYLLAAAPTSSTSIIAGTTAGLDPVMNRYFLEEKKNGL 673

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V      +L     W                            +  A  ID  W + 
Sbjct: 674 MPRVAP----DLSMETFW---------------------------YYKNAHLIDQTWSVR 702

Query: 859 SASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   RQ+ IDQAQS+NLY  +E + + +  +Y QAW  G+KT YY+RSRS    E
Sbjct: 703 ACGIRQRHIDQAQSMNLYITNEYTFRGVLNLYLQAWEEGVKTIYYIRSRSLEVEE 757


>gi|21233408|ref|NP_639325.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66770373|ref|YP_245135.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21115248|gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66575705|gb|AAY51115.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 827

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/825 (28%), Positives = 371/825 (44%), Gaps = 97/825 (11%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185
            R A +              +  +     I F   RLE  +++  +    +         
Sbjct: 44  PRQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSV 103

Query: 186 YKNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +  +   D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  + +S    +L+     +  ERD  F Y GL 
Sbjct: 156 NRFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCST 355
           +L  RY    N     E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +T
Sbjct: 216 LLATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVAT 275

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I 
Sbjct: 276 PTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIR 335

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R
Sbjct: 336 GVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLR 395

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAYENYER 527
            HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++     
Sbjct: 396 AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYE 455

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTE
Sbjct: 456 EVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTE 515

Query: 588 ITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDYDKLAS 623
           I  N S                     +  VCNL SINL           +    D L  
Sbjct: 516 ILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLER 575

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +
Sbjct: 576 LIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYS 635

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           DE  E I++  + AS+ELA+E+G YS F+GS W  G +                    + 
Sbjct: 636 DELYERINYLTVQASMELAKEKGTYSVFRGSDWHTGEY--------------FRARDYNS 681

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V  
Sbjct: 682 PQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAA 741

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L                                D        A+++D    +   +RR
Sbjct: 742 PGLSL------------------------------DTWPYYEKGAYKVDQFASVRQNARR 771

Query: 864 QKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
           Q+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 816


>gi|15837798|ref|NP_298486.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa 9a5c]
 gi|9106168|gb|AAF84006.1|AE003954_3 ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa 9a5c]
          Length = 830

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 235/800 (29%), Positives = 362/800 (45%), Gaps = 97/800 (12%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
             + F+  RLE  ++        +         +  +   D ++  DL   LI  +   +
Sbjct: 72  RRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLIREAEARV 131

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P +    AR  L +L +           +   ++    Y  +        +  + +
Sbjct: 132 DLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESLADRNIYS 183

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             +  S    +L+     +  ERD  F Y GL +L  RY     +    E+PQ  ++ +A
Sbjct: 184 NDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQERWLTIA 243

Query: 326 MGLALKETE--------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           + L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 244 LYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSSCFIDTVD 303

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K  N+TAV+
Sbjct: 304 DSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQLNNTAVS 363

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +  
Sbjct: 364 VDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRG 423

Query: 498 GWTLFSPDEVSDLHDLYGKEF--------EIAYENYERQADRGEIKVFRKISAVALWRKM 549
            W LF P EV  +   Y ++F          ++          E    + + A+ +++++
Sbjct: 424 DWYLFDPYEVKCVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKAIDIFKRI 483

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594
           +    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N +                
Sbjct: 484 MVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMISGNQIVT 543

Query: 595 ----EETAVCNLGSINLLA--HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL        +    D L   I   VR+LDNVID+N   + +A  
Sbjct: 544 TKQAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLLPVPQATI 603

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + SPEA + +D   E I++  I AS+ELA+E+G Y
Sbjct: 604 TNQKYRAIGLGTFGWHHLLAQKAIHWNSPEAEQYSDALYERINYLTIRASMELAKEKGTY 663

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F GS W  G +                    +   W EL  +V   G+RN+  +A+AP
Sbjct: 664 AVFPGSDWQTGEY--------------FRARDYNSPQWLELAAQVAVNGVRNAYMVAVAP 709

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        VV   L                      
Sbjct: 710 NMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAPGLSL-------------------- 749

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
                     D        A+++D    I   +RRQ+ +DQ+ S N Y+        L  
Sbjct: 750 ----------DTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPSTIRASTLLD 799

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           ++  AW  GLKTTYY+RS  
Sbjct: 800 LHMTAWREGLKTTYYVRSND 819


>gi|188993573|ref|YP_001905583.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735333|emb|CAP53547.1| Ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris]
          Length = 827

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/825 (28%), Positives = 371/825 (44%), Gaps = 97/825 (11%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185
            R A +              +  +     I F   RLE  +++  +    +         
Sbjct: 44  PRQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSV 103

Query: 186 YKNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +  +   D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  + +S    +L+     +  ERD  F Y GL 
Sbjct: 156 NRFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCST 355
           +L  RY    N     E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +T
Sbjct: 216 LLATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVAT 275

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I 
Sbjct: 276 PTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIR 335

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R
Sbjct: 336 GVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLR 395

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAYENYER 527
            HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++     
Sbjct: 396 AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYE 455

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTE
Sbjct: 456 EVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTE 515

Query: 588 ITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDYDKLAS 623
           I  N S                     +  VCNL SINL           +    D L  
Sbjct: 516 ILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLER 575

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +
Sbjct: 576 LIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYS 635

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           DE  E I++  + AS+ELA+E+G YS F+GS W  G +                    + 
Sbjct: 636 DELYERINYLTVQASMELAKEKGTYSVFRGSDWHTGEY--------------FRARDYNS 681

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V  
Sbjct: 682 PQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAA 741

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L                                D        A+++D    +   +RR
Sbjct: 742 PGLSL------------------------------DTWPYYEKGAYKVDQFASVRQNARR 771

Query: 864 QKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
           Q+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 816


>gi|71901121|ref|ZP_00683228.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|71729126|gb|EAO31250.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
          Length = 830

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/800 (29%), Positives = 361/800 (45%), Gaps = 97/800 (12%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
             + F+  RLE  ++        +         +  +   D ++  DL   LI  + + +
Sbjct: 72  RRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLIREAESRV 131

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P +    AR  L +L +           +   ++    Y  +        +  + +
Sbjct: 132 DLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESLADRNIYS 183

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVA 325
             +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ  ++ +A
Sbjct: 184 NDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASCGVFELPQERWLTIA 243

Query: 326 MGLALKETE--------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           + L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 244 LYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSSCFIDTVD 303

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K  N+TAV+
Sbjct: 304 DSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQLNNTAVS 363

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +  
Sbjct: 364 VDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRG 423

Query: 498 GWTLFSPDEVSDLHDLYGKEF--------EIAYENYERQADRGEIKVFRKISAVALWRKM 549
            W LF P EV  +   Y ++F          ++          E    + + A+ +++++
Sbjct: 424 DWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKAIDIFKRI 483

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594
           +    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N +                
Sbjct: 484 MVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMISGNQIVT 543

Query: 595 ----EETAVCNLGSINLLA--HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL        +    D L   I   VR+LDNVID+N   + +A  
Sbjct: 544 TKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLLPVPQATI 603

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+ELA+E+G Y
Sbjct: 604 TNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMELAKEKGTY 663

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F GS W  G +                    +   W EL  +V   G+RN+  +A+AP
Sbjct: 664 AVFPGSDWQTGEY--------------FRARDYNSPQWLELAAQVAVNGVRNAYMVAVAP 709

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        VV   L                      
Sbjct: 710 NMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAPGLSL-------------------- 749

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
                     D        A+++D    I   +RRQ+ +DQ+ S N Y+        L  
Sbjct: 750 ----------DTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPSTIRASTLLD 799

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           ++  AW  GLKTTYY+RS  
Sbjct: 800 LHMTAWREGLKTTYYVRSND 819


>gi|283477830|emb|CAY73746.1| nrdA [Erwinia pyrifoliae DSM 12163]
          Length = 693

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 185/733 (25%), Positives = 297/733 (40%), Gaps = 81/733 (11%)

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +I ++ P+Y  + AR  +  LR++     ++ P+                R +E G    
Sbjct: 1   MISRDAPDYQYMAARLAIFHLRKKAYGQ-FEPPKLIDQ----------VTRMVEMGKYDP 49

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVA 325
            L       +   +   + + RD  F Y  ++ L  +Y +   ++G   E  Q  ++ VA
Sbjct: 50  HLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLYILVA 109

Query: 326 MGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             L        +      FY+ +S+F     TP +    T   Q SSC L    D L  I
Sbjct: 110 ACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSI 169

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
                          G+G +   +R LG+ I G      G IPF K       + +QGG 
Sbjct: 170 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGV 229

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +    TLFS
Sbjct: 230 RGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGEDITLFS 289

Query: 504 PDEVSDLHDLYGK---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           P +V  L+D +     EFE  Y  YE+     ++    ++ AV L+  M+     TG  +
Sbjct: 290 PSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKL----RVKAVDLFSLMMQERASTGRIY 345

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINLLAHF 611
           I   D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL A  
Sbjct: 346 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFNLGAIE 405

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +      D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 406 S-----LDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 460

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+      
Sbjct: 461 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDL- 519

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +   N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 520 ---DAICNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 576

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V         +R   +  ++ D+  +DG +                    
Sbjct: 577 KASKDGILRQVVPEY-----ERLKDNYELLWDMPNNDGYLQ------------------- 612

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQAWLMGLKTTYYL 903
                       QK++DQA S N   D P+         K+L      A+  G+KT YY 
Sbjct: 613 -------LVGVMQKFVDQAISSNTNYD-PTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQ 664

Query: 904 RSRSATSVEKSTL 916
            +R      +  L
Sbjct: 665 NTRDGAEDSQDDL 677


>gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 766

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 200/779 (25%), Positives = 353/779 (45%), Gaps = 48/779 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +          K  ++ G++ S 
Sbjct: 2   AELKKHLYVQKRDGTIEKVHYDEIIARIKQLCYGLEKIDPAATAIHVIKKCLFAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A    + T+    P+Y K+ AR  +  L ++         ++     +  ++     
Sbjct: 62  LDDAAAEMAITMATIHPDYEKLAARIAISNLHKQT--------KEKFSDVIDDIHKN--D 111

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            Y   G+   +    M + D   L   + YE D+  +Y G + L   + +      IE P
Sbjct: 112 DYWNTGLSDDIYEIIMKNKD--RLNEAINYENDYILDYFGFKYLTQNFLVKSENQTIERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF---NSGTRHPQLSSCFLT 374
           Q  FM+VA+ +   + +    A+E Y +LS    M S   +     +   +  + S +  
Sbjct: 170 QHLFMKVAVSIHGDDID---SAIETYKMLSQKLCMFSPVVMQLQPAARKLNVSVISHYSV 226

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            +  D + GI+  L   +        +      +R  G +I G+NGKS G+   LK  + 
Sbjct: 227 AMIADSIDGIYDTLNRLSTFILPYSSVAVHVHKIRAAGTYIKGSNGKSSGLPLMLKQYD- 285

Query: 434 TAVAVNQGGKRKGAV---CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           + V   +  +R  ++     Y E WH D+ + +D  + T     +  +   A WIPD FM
Sbjct: 286 SMVHCKETLERPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIKLKNSQLALWIPDEFM 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  W+  SPD    L D++G+EF+  Y+ YE +    +  V R+I A  LW +++
Sbjct: 346 RRVENDQMWSFMSPDHCPGLIDVHGEEFDNLYKEYELK---SKSFVMRQIEAKKLWSQII 402

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P + FKD CN +S + H+G +  +    +    ++S+E A C   SI++   
Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462

Query: 611 FA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN----HTHRAIGLGLMGFQS 665
               N FD+ KL  T +     L+ +I+ N   + K  +          AIG+G+ G   
Sbjct: 463 LTSENIFDFSKLKETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAIGIGIQGLAD 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               +  P+ + EA  +  +  E I + A+ AS ELA + G Y ++  S   +G+   D 
Sbjct: 523 LFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPTSKGLLQFDL 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +            ++   W+ LK ++   G+RNS     + T   + I G   SI+P 
Sbjct: 583 WNVKP----------SNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIFGNVNSIEPL 632

Query: 786 YQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             N+  +      +   +  VVN +L+ +L  R LWDE +I +L  + GSI  I  +PDD
Sbjct: 633 DTNVKRRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSIQEI-NLPDD 691

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           LK+++ T +EID   L+  A+ R  +IDQ+Q+ +L + + +   +  ++   W MGLKT
Sbjct: 692 LKQLYRTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHISTWKMGLKT 750


>gi|116873588|ref|YP_850369.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742466|emb|CAK21590.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 764

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 373/800 (46%), Gaps = 87/800 (10%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +     +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIAEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEDLIVAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E YE      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGIGTFREKYEELVAD-ETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVLAEE--EGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 543 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 602

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 603 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 648

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 649 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 682

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 683 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 738

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 739 WNEGLKTTYYVRSNDIDVEE 758


>gi|288554978|ref|YP_003426913.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288546138|gb|ADC50021.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 723

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/744 (32%), Positives = 363/744 (48%), Gaps = 93/744 (12%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   L  +EP++  V A   +  LR ++      +P+      +   +PE+    IE+G+
Sbjct: 37  ALNELSVEEPHWTYVAAACYINHLREQIAEQRGVEPK-----VLSASFPEFLKAQIEKGI 91

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMR 323
               L     D +L  LA  L+  RD  F Y+G++ L DRY     N   +E+PQ  +M 
Sbjct: 92  YDGRLDSYSTD-ELYELALTLEPARDQKFTYIGIKTLADRYLAKDFNDQIVELPQERWMV 150

Query: 324 VAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM L  +E    + +   E Y  LS  +   +TPT+ N+G    QLSSCF+ TV DDL 
Sbjct: 151 IAMTLMSEENRGSRLELVKEAYWALSHLYMTVATPTMSNAGKVGGQLSSCFIDTVEDDLR 210

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF +  + A ++K  GGLG     +R  G+ I G    S GVIP++K  N+ AV+V+Q 
Sbjct: 211 SIFDSCTDAATVSKNGGGLGMYLGKIRARGSSIRGFKNVSSGVIPWMKQLNNVAVSVDQL 270

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ TA  +PDLFM+ V +   W L
Sbjct: 271 GQRQGAIAVYLDVWHKDIFAFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEKRDTWYL 330

Query: 502 FSPDEVS-----DLHDLYGK-----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           F P EV       L D Y +     EF   YE         +     +I A+ + ++++ 
Sbjct: 331 FDPHEVRVKMGFSLEDFYDEKKGDGEFRKRYEQC----AANDELSRTEIPAIEVMKRIML 386

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593
              ETG P++ ++D  N  +P +H G+++ SNLCTEI  N S                  
Sbjct: 387 SQLETGSPFMFYRDTANRLNPNKHKGMIYGSNLCTEIMQNMSATTVVEETLEDDTISIKK 446

Query: 594 -SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S++L   F++     D +   ++  VR+LDNVID N   +++A+K+N  
Sbjct: 447 QPGDYVVCNLSSLSLAQVFSD-----DVVERVVKIQVRMLDNVIDQNSIGVKQAEKTNKM 501

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L    I + S E+V   +   E I+  AI AS ELA E+GAY  ++
Sbjct: 502 YRAIGLGTYGWHHHLAKRGIAWESEESVWEVERVYERINQAAIKASAELAAEKGAYPHYE 561

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G F  +                     WDE++  +   GMRN   MA+AP AT 
Sbjct: 562 GSDWQTGEFFSE--------------RGYEGAEWDEIRSVISKHGMRNGYVMAVAPNATT 607

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G + SIDP +Q  YV+   +    VV      +L  R  W                
Sbjct: 608 SLIAGSTASIDPLFQKYYVEEKKNYRIPVVAP----DLDARTTW---------------- 647

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQ 891
                       +  A  +D  W I   + RQ+ +DQ  S NLY+      K+L  ++  
Sbjct: 648 -----------YYKPAHLVDQTWSIRQNAARQRHVDQGISFNLYVPNNVKAKELLDLHLL 696

Query: 892 AWLMGLKTTYYLRSRSATSVEKST 915
           AW  GLKTTYY+RS S +  +  +
Sbjct: 697 AWKEGLKTTYYVRSTSLSVDDCES 720


>gi|315304278|ref|ZP_07874627.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627357|gb|EFR96141.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
          Length = 763

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/800 (30%), Positives = 374/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +     +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYPADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    +L+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E ++++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQSIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPGL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 738 WNEGLKTTYYVRSNDIDVEE 757


>gi|317499962|ref|ZP_07958198.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898679|gb|EFV20714.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 761

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 375/794 (47%), Gaps = 101/794 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +       + + +   ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGERFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +      +   K+ +K+    +  LY +      E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFR-----FSEKLKEEEKSIG--ISDLYEKIVY-LTEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 KEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           K +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD- 509
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 510 ----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A        R +    L R ++    ETG P+   +D
Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARI----KKRTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S                       + E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G + 
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESGAY- 608

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 609 -------------FEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP     +++         V   L  E                                 
Sbjct: 656 DPVMNKYFLEEKKGSMLPRVAPDLSPE-------------------------------TY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+    + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRSATSVEKST 915
           Y+RS+S    E  +
Sbjct: 745 YVRSKSLEVEECES 758


>gi|284051980|ref|ZP_06382190.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           platensis str. Paraca]
 gi|291570481|dbj|BAI92753.1| ribonucleoside-diphosphate reductase alpha chain [Arthrospira
           platensis NIES-39]
          Length = 752

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/802 (26%), Positives = 370/802 (46%), Gaps = 84/802 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +D P   +++++  DG+L   +  R+  +V  AC GL D +   + +     + +G++
Sbjct: 6   TTTDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGL-DANPITLEAGLTTRLKNGVT 64

Query: 195 ESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +++  LI  +  L    +P++  V  R  +  L ++ L +   + +          Y 
Sbjct: 65  TREIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YC 115

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           +     ++ G     L +      L      +  + D  ++Y G  +L  RY L      
Sbjct: 116 QTVTTKVKAGQYDDRLLKY-TPEQLREAGTWINPQWDKDYDYAGAILLTKRYLL-----P 169

Query: 314 IEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E+PQ   +  A+ LA+ E  +++   A +FY  ++      +TP L N    +  LSSC
Sbjct: 170 QELPQEALLSCALLLAVVEAPEKRMFWAHKFYQAIALRQISLATPILANLRIPNGSLSSC 229

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+  + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP++K+ 
Sbjct: 230 FIIGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLL 289

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D FM+
Sbjct: 290 NDTAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMR 349

Query: 492 RVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           RV     WTL  P EV      +L +L+G+EFE++Y+  E  +   ++K++++I+A  L+
Sbjct: 350 RVRNCENWTLVDPYEVRVKLGIELSELWGEEFELSYQKIES-SLDSKLKLYKRINARELF 408

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           + ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L    
Sbjct: 409 KNIMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTC 463

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            L        D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG    
Sbjct: 464 NLNSLNLANLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQCYRTIGVGVMGLADW 523

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y     V+      E I F+    S+EL++ERGAY +F GS W QG       
Sbjct: 524 LAKRRFSYN---HVQEISNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL----- 575

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            + A+  D    +   ++ W EL + ++  G+RNS+  AIAP  + + + G + S+ P Y
Sbjct: 576 -IGAKPVDWFLTHADDKIRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCY 634

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              +      G   +   F+     + + W                            + 
Sbjct: 635 SRFFYDKWAKGTVPIAPPFI-----KENFW---------------------------FYP 662

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEPS----GKKLDFIYRQAW 893
               +D   ++++ +  Q+WID   S+ L         + +EP      K +      AW
Sbjct: 663 ENKTLDQQIVVKAVATMQQWIDTGISMELMFNLNQGVYFPEEPDRSLKAKDIFETLMAAW 722

Query: 894 LMGLKTTYYLRSRSATSVEKST 915
             G K  YY+R+    S ++S 
Sbjct: 723 EQGCKAIYYVRTVQRDSFQESE 744


>gi|71276517|ref|ZP_00652792.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900742|ref|ZP_00682864.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729740|ref|YP_001775173.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M12]
 gi|71162694|gb|EAO12421.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729512|gb|EAO31621.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964533|gb|ACA11543.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 830

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/800 (29%), Positives = 360/800 (45%), Gaps = 97/800 (12%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLI 210
             + F+  RLE  ++        +         +  +   D ++  DL   LI  +   +
Sbjct: 72  RRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLIREAEARV 131

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRYIEEGVKA 266
           +   P +    AR  L +L +           +   ++    Y  +        +  + +
Sbjct: 132 DLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESLADRNIYS 183

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
             +  S    +L+     +  ERD  F Y GL +L  RY     +    E+PQ  ++ +A
Sbjct: 184 NDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQERWLTIA 243

Query: 326 MGLALKETE--------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           + L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 244 LYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSSCFIDTVD 303

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K  N+TAV+
Sbjct: 304 DSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQLNNTAVS 363

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM+ V +  
Sbjct: 364 VDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRG 423

Query: 498 GWTLFSPDEVSDLHDLYGKEF--------EIAYENYERQADRGEIKVFRKISAVALWRKM 549
            W LF P EV  +   Y ++F          ++          E    + + A+ +++++
Sbjct: 424 DWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKAIDIFKRI 483

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------------- 594
           +    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N +                
Sbjct: 484 MVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMISGNQIVT 543

Query: 595 ----EETAVCNLGSINLLA--HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL        +    D L   I   VR+LDNVID+N   + +A  
Sbjct: 544 TKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLLPVPQATI 603

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+ELA+E+G Y
Sbjct: 604 TNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDVLYERINYLTIRASMELAKEKGTY 663

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + F GS W  G +                    +   W EL  +V   G+RN+  +A+AP
Sbjct: 664 AVFPGSDWQTGEY--------------FRARDYNSPQWLELAAQVAVNGVRNAYMVAVAP 709

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        V    L                      
Sbjct: 710 NMSTAQIAGSTASIDPVYSAFYYEEKKDYRRPVAAPGLSL-------------------- 749

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
                     D        A+++D    I   +RRQ+ +DQ+ S N Y+        L  
Sbjct: 750 ----------DTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPSTIRASTLLD 799

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           ++  AW  GLKTTYY+RS  
Sbjct: 800 LHMTAWREGLKTTYYVRSND 819


>gi|58532962|ref|YP_195185.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331429|emb|CAF34215.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 776

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/833 (25%), Positives = 347/833 (41%), Gaps = 83/833 (9%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
                 + +   DG++   N +++  +VEEAC  L  VS+  V   +    +DG++  ++
Sbjct: 2   EESMTTINVKKRDGSIEPLNLEKVHKMVEEACEDLAGVSASQVEMHSGIQFHDGITTENI 61

Query: 199 ETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  LI S+  LI    PNY  V AR LL  LR++V      K        M   Y     
Sbjct: 62  QEILIRSASDLISLDNPNYQYVAARLLLFGLRKQVFNKNVWK------DGMPSAYDVALY 115

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIE 315
                 V    L +   D D V + N + ++RD+ F Y GL+ + D+Y +    +G   E
Sbjct: 116 NVTINKVYDEDLLDKYSDEDWVKVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYE 175

Query: 316 MPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  ++ +AM L       ++      +YN +S       TP +    T   Q +SC L
Sbjct: 176 TPQYMYLFIAMTLFADYPISQRLDYVRRYYNAISKHKINIPTPIMAGVRTTLRQFASCVL 235

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  IF +            G+G +   +RG+ + I G   K  GVIPFLK    
Sbjct: 236 IDSDDTLDSIFTSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEA 295

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R 
Sbjct: 296 TVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERF 355

Query: 494 TQNAGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             N   +LFSP +V  L+D +G   F+  Y  YER          + I A  L+  +L  
Sbjct: 356 ISNGEISLFSPHDVPGLYDAFGTDRFDELYVGYERDTSVPR----KTIGAQELFLDLLKE 411

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSI 605
             ETG  ++   D CN  S  +    V+ SNLC EITL +          E A+C L +I
Sbjct: 412 RAETGRVYVMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPLHQIDGNGEIALCILSAI 469

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           N     A    + D+L      AVR L+ +ID   + ++ A+ S    R++G+G +G   
Sbjct: 470 N-----AGKLKNLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAH 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y  P+A ++  E  E   F+ + +S E+A+E+GA   F  + +  G+ PID+
Sbjct: 525 YLAKQGVKYDDPQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDT 584

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                   DE+  N+ +   W+ L+  ++T G+R+S   A  P+ + + +   +  I+P 
Sbjct: 585 YKSD---VDEIVPNKLNH-DWETLRSEIRTFGLRHSTLSAQMPSESSSVVSNETNGIEPP 640

Query: 786 YQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              L VK +  G    +   +   +     LW                    +P++    
Sbjct: 641 RDYLSVKKSKKGPLKQIVPQYQTLKNNYTLLW-------------------DMPNNTGY- 680

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK--------KLDFIYRQAW 893
                       I   +  QK+ DQA S N      + P+ +         L   Y+  W
Sbjct: 681 ------------INVVAVMQKFFDQAISGNWSYNPENYPNNEVPVSVMAGDLLNTYKYGW 728

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               KT+YY  +   +  +    K  + K     + D  ++        SCT 
Sbjct: 729 ----KTSYYQNTYD-SKTDDFEDKQEEKKSLEDLLNDILNTNTQEESCDSCTI 776


>gi|299822181|ref|ZP_07054067.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
 gi|299815710|gb|EFI82948.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
          Length = 758

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/800 (31%), Positives = 375/800 (46%), Gaps = 87/800 (10%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  + +       +  +    + +  +   +  +  DL   LI
Sbjct: 5   IVKDGGNRKLEFDHARLDRYLNKVHEEFPKLEIEDYKRKIFNFIEKKEDYAADDLVDYLI 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 65  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYIGLQESLGER 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    +L+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 120 GIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 179

Query: 322 MRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E   ++ +   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 180 LTIALYLMQNEGKEKRMELVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 239

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 240 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 299

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 300 QLGQRKGAISVYLDVFHKDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDVFMEAVERRGEW 359

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV D    Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 360 YLFDPHEVHDKKGWYLQDFYDEKKGEGTFREKYDELVAD-ETISKKIVKAIDIAKRIMLS 418

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G ++SSNLCTEI  N S+                  
Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGRIYSSNLCTEIMQNMSATRVIHEIISGDQIVITKK 478

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL SINL         D   L+  I   VR+LDNVID+N   + +A  +N  +
Sbjct: 479 AGDFVVCNLSSINLGRAVLAE--DESTLSRLIDVEVRMLDNVIDLNELPVPQATITNKKY 536

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 537 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEKINYLAIQASNKLAQEKGAYKVFKG 596

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +                    S   W EL  +V   GMRN+  MA+AP  + A
Sbjct: 597 SDWETGEY--------------FERRDYSTEAWKELADKVAASGMRNAYLMAVAPNMSTA 642

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                       S+  
Sbjct: 643 QIAGSTASIDPIYNAFYYEEKKDYRRPVIAPDL-----------------------SLNT 679

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                         A+++D    +   +RRQ+ +DQ+ S NLY+       KL  ++  A
Sbjct: 680 YP-------YYEKGAYKVDQFASVRQNARRQRHVDQSLSFNLYVPSGIKASKLLELHMTA 732

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 733 WREGLKTTYYVRSNDIDVEE 752


>gi|331087815|ref|ZP_08336740.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409510|gb|EGG88951.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 761

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 374/794 (47%), Gaps = 101/794 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +       + +     ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +      +   K+ +K+    +  LY +      E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFR-----FSEKLKEEEKSIG--ISDLYEKIVY-LTEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 KEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           K +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD- 509
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 510 ----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A        R +    L R ++    ETG P+   +D
Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARI----KKRTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S                       + E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G + 
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESGAY- 608

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 609 -------------FEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP     +++         V   L  E                                 
Sbjct: 656 DPVMNKYFLEEKKGSMLPRVAPDLSPE-------------------------------TY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+    + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRSATSVEKST 915
           Y+RS+S    E  +
Sbjct: 745 YVRSKSLEVEECES 758


>gi|172058303|ref|YP_001814763.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sibiricum 255-15]
 gi|171990824|gb|ACB61746.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sibiricum 255-15]
          Length = 755

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 374/794 (47%), Gaps = 88/794 (11%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETALIFSSRTLIE-KEPNY 216
            + +  ++ +  +   ++  +       + +    L    +   L   +  +++ +EPN+
Sbjct: 17  IEDVYTVIRQITAAYSELDVERYTERAIRALEGKTLQADQVYELLTMHALDMLKAEEPNW 76

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             V     L +L  E       + +     E          +  E G+    L E+    
Sbjct: 77  TFVATATYLNRLYLEA-----SENRGYAAEERYGSLYHLIEKLTEIGIFTPHLLETYTKE 131

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEK 335
           ++  LA  +   RD  F Y+GL+ L DRY    +  +  E+PQ  FM +AM L   E ++
Sbjct: 132 EVEELAASIDPSRDHLFTYIGLRTLSDRYLARDHVKKLYELPQERFMIIAMTLMQTEPKE 191

Query: 336 EK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L GI+ +  + A L
Sbjct: 192 RRIELVKESYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTDVATL 251

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G R+G++  YL+
Sbjct: 252 SKGGGGIGVYMGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQLGMRQGSIAVYLD 311

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ EFLD + N GD+R RTHD+ T   +PD FM+ V     W LF P E+  +   
Sbjct: 312 IWHKDILEFLDAKLNNGDERLRTHDLFTGVSLPDHFMRTVEARGDWYLFDPHEIRTVMGF 371

Query: 514 YGKE-FEIAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             ++ F+         E Y    +   +    K+ A+ L ++ +    ETG P++ F+D 
Sbjct: 372 SLEDSFDETEQGGSFTEKYTACVNEPRLS-RTKVPAIDLVKRYMRSQLETGTPYMFFRDA 430

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINL 607
            N  +P +H G+++SSNLC+EI  N S                     +  VCNL SI L
Sbjct: 431 VNRANPNKHAGMIYSSNLCSEIMQNMSPTTVTEEYTEDGKIIITKTPGDFVVCNLSSIAL 490

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                 N      L   I   +R+LDNVID+N   + +A+ +N  +RA+GLG  G+   L
Sbjct: 491 ARAVRENV-----LERLIPIQMRMLDNVIDLNTIDVPQAQITNQKYRAVGLGTFGWHHLL 545

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L  I + S EAV+ AD   E I++  I AS++LA+E+GAY  F+GS W  G +      
Sbjct: 546 ALEGIRWESVEAVQYADRLYEKIAYLTIDASMQLAKEKGAYRLFEGSEWQTGEY------ 599

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                        T  L WD L+  +   GMRN+  MA+AP ++ A I G + SIDP Y+
Sbjct: 600 -----IARRHYKTTPELNWDRLQADITAHGMRNAYLMAVAPNSSTAIIAGSTASIDPIYK 654

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +Y +   +    V    L  E                                   + +
Sbjct: 655 KVYAEEKKNYKIPVTVPDLTPE-------------------------------TNWFYKS 683

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           AFEID +W I   + RQ+ IDQA S NLY  +    K+L  ++ +AW +G+KT YY RS 
Sbjct: 684 AFEIDQLWSIRQNASRQRHIDQAISFNLYVKNSVKAKELLEMHMEAWQLGMKTIYYTRS- 742

Query: 907 SATSVEKSTLKGVD 920
             T+VE    +   
Sbjct: 743 --TTVEIDECESCS 754


>gi|289435503|ref|YP_003465375.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171747|emb|CBH28293.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 763

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/800 (30%), Positives = 375/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +     +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIAEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    +L+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E ++++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 738 WNEGLKTTYYVRSNDIDVEE 757


>gi|172036269|ref|YP_001802770.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
 gi|171697723|gb|ACB50704.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
          Length = 769

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/835 (27%), Positives = 382/835 (45%), Gaps = 100/835 (11%)

Query: 124 ERSDVRAAQSHSKSDAPIAP---------KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
           + + + + Q    SD  I P         K+++   DG+  + N  ++  +V  AC+  +
Sbjct: 3   QPTVITSPQQTHHSDTHITPNYHSQLGESKIRVRRRDGSWTALNIGKIRAVVNWACAE-K 61

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL 233
           DV+S  + +     + DG++  +++  LI  +  +    EP++  V  R  +  L ++ L
Sbjct: 62  DVNSIALEAGLTTRLRDGITTREIQDNLINCALEMCSPTEPDWRYVAGRLHIWSLWKDTL 121

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
                             Y       +E G     L       +L    + +  + D  +
Sbjct: 122 ---------VNRGYQYGNYETTVETKVEAGQYDNRLLTYSTT-ELREAGSWINPDWDTDY 171

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHF 351
           +Y G  +L  RY L       E+PQ   +  A+ LA  E+ + +   A +FY  ++S   
Sbjct: 172 DYAGAVLLTSRYLL-----PQELPQEALLSCALLLATVESPENRLPWARQFYEAIASRKV 226

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TP L N       L+SCF+ ++ D+L  IF  +   A ++K  GG+G + + +R  G
Sbjct: 227 SLATPILANLRVPGGSLTSCFILSIDDNLESIFEEITNTARISKNGGGVGVNVSRIRATG 286

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + + G N  S G+IP++K+ NDTA+AVNQGG+R GAV   ++ WH+DV EFL+++   GD
Sbjct: 287 SWVMGKNNASGGIIPWIKLLNDTAIAVNQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGD 346

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYE 526
            RR+ +D+     + D FM+RV     WTL  P E+ +     L +L+G++FE AY   E
Sbjct: 347 QRRKAYDVFPQLILTDEFMRRVENKEQWTLVDPYEIREKLGIELAELWGEKFEAAYRLIE 406

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            + DR EI ++++++A  L++ ++    ETG P++ FKD  N  +P +HVG +   NLCT
Sbjct: 407 AELDR-EITLYKRVNARELFKTIMRSQVETGMPYLAFKDTINKANPNKHVGYIPGVNLCT 465

Query: 587 EITLN-SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E   N +  +E   CNL S+NL         +  +L    + AVR+LDN IDI     E 
Sbjct: 466 ESFSNVTPGKEAHCCNLVSLNLAN------IEEYELNYLCKIAVRILDNTIDITNPPFED 519

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK  N  +R IG+G MG    L    + Y +   +       E + +     S+ELA+ER
Sbjct: 520 AKAHNDRYRTIGVGCMGLADWLAKKELTYEN---LTEISNLFEEVGYWCTHTSMELAKER 576

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             Y +F+GS W++G+       + ++  +    N   +  W +L + +KT G+RNS+  A
Sbjct: 577 SPYDAFEGSDWNKGLL------IGSKPVNWFVENAHKKERWIQLSEDIKTYGIRNSHITA 630

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAP  + + + G + SI P Y   +      G   +   F+                   
Sbjct: 631 IAPNTSSSLVQGCTASILPVYSRFFYDKWAKGTVPIAPPFI------------------- 671

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------Y 876
                         D    +     +D   ++++ S  Q+WID   S+ L         +
Sbjct: 672 -------------KDSFWFYHENKTLDQQKVVKAVSTIQQWIDTGISMELLFNLNQGIYF 718

Query: 877 LDEP----SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            +EP    + K +      AW  G K  YY+R+     V+K   K  D    A  
Sbjct: 719 PNEPERCLTAKDIFETLLLAWKEGCKAIYYVRT-----VQKDDFKESDNNCTACA 768


>gi|153814164|ref|ZP_01966832.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
 gi|145848560|gb|EDK25478.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
          Length = 761

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 374/794 (47%), Gaps = 101/794 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +       + +     ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +      +   K+ +K+    +  LY +      E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFR-----FSEKLKEEEKSIG--ISDLYEKIVY-LTEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY +  +    +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 KEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
           K +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSD- 509
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 510 ----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A        R +    L R ++    ETG P+   +D
Sbjct: 377 KEYCLEDSFGEEWERRYWDCVHDARI----KKRTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S                       + E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G + 
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESGAY- 608

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 609 -------------FEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP     +++         V   L  E                                 
Sbjct: 656 DPVMNKYFLEEKKGSMLPRVAPDLSPE-------------------------------TY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+    + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRSATSVEKST 915
           Y+RS+S    E  +
Sbjct: 745 YVRSKSLEVEECES 758


>gi|284928995|ref|YP_003421517.1| ribonucleoside-diphosphate reductase, subunit alpha [cyanobacterium
           UCYN-A]
 gi|284809454|gb|ADB95159.1| ribonucleoside-diphosphate reductase, alpha subunit [cyanobacterium
           UCYN-A]
          Length = 770

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/806 (28%), Positives = 378/806 (46%), Gaps = 91/806 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K+   DG+  + +  ++  +V  ACSG +DV+S  + +     + DG++  D++  LI
Sbjct: 33  KIKVERRDGSWAALDIGKIRAVVSWACSG-KDVNSIALEAGLTTRLRDGITTKDIQNNLI 91

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +   +EP++  V  R  +  L + +L +   +  K         Y       +E 
Sbjct: 92  NCTLEMCSPQEPDWRYVAGRLHIWSLWKNILVSRGYQYDK---------YEFTVQTKVEN 142

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
               + L    ++ +L    + +  + D  ++Y G  +L  RY L       E+PQ   +
Sbjct: 143 RQYDKRLLTYSLE-ELKEAGSWINSDWDIDYDYAGAVLLSSRYLLPD-----ELPQEALL 196

Query: 323 RVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
             A+ LA+ E  + +   A  FY  +++     +TP L N       L+SCF+  + DDL
Sbjct: 197 TCALLLAIVEAPQNRLPWAKRFYEAIATRKISLATPILANLRVPEGSLTSCFIIAIDDDL 256

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AVNQ
Sbjct: 257 ESICEGVTNAARISKNGGGVGANVSRIRATGSWVMGKANASGGIIPWVKLLNDTAIAVNQ 316

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R GA+   ++ WH+D+ EFL+++   GD RR+ +D+     + D FM+RV     WT
Sbjct: 317 GGRRAGAITISVDIWHLDIPEFLEMQTENGDQRRKAYDVFPQLVLTDEFMRRVENKQEWT 376

Query: 501 LFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P EV      +L +L+G+EFE AY   E +       +++KI+A  L++ ++    E
Sbjct: 377 LVDPYEVRTKLGIELAELWGEEFERAYTLIESELGNKIT-LYKKINARELFKNIMRSQIE 435

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFANN 614
           TG P++ FKD  N  +P +HVG + S NLCTE   N    +E+  CNL S+NL       
Sbjct: 436 TGMPYLAFKDTINRANPNKHVGYIPSVNLCTESFSNVDPRKESHCCNLVSLNLAN----- 490

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             +  ++      AVR+LDN IDI       AK  N  +R IG+G MG    L    + Y
Sbjct: 491 -IEESEIGYLSSLAVRILDNTIDITNPPFSYAKAHNDRYRTIGVGCMGLADWLAKRFLTY 549

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               A+    +  E + +     S+EL++ERGAY++F GS W +G        + ++  D
Sbjct: 550 DDINAIS---QLFEEVGYWCTHTSMELSKERGAYNAFAGSDWSKGKL------IGSKPVD 600

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               N + +  W EL + +KT G+RNS+  AIAP  + + + G + SI P Y   +    
Sbjct: 601 WFIENASQKERWVELSENIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYDKW 660

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G   +   F+     +   W         YH+  +                   +D  
Sbjct: 661 AKGTVPIAPPFI-----KESFWF--------YHENKV-------------------LDQQ 688

Query: 855 WLIESASRRQKWIDQAQSL----NLY-----LDEP----SGKKLDFIYRQAWLMGLKTTY 901
            +I++ S  Q+WID   S+    NL       +EP    S   +  ++  AW  G K  Y
Sbjct: 689 KVIKAVSAIQEWIDTGISMELLFNLNKGIYLPEEPESSLSATDIFKMFVTAWKNGCKAIY 748

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVP 927
           Y+R+     V+K   K  D    +  
Sbjct: 749 YVRT-----VQKDDFKDFDNTCTSCA 769


>gi|326782932|ref|YP_004323330.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004191|gb|ADO98585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 772

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/830 (24%), Positives = 342/830 (41%), Gaps = 94/830 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G     +  ++  +VE AC GL  VS   V   +    +DG+  +D++  LI 
Sbjct: 14  INVTKREGEKTPLDLNKVHKMVELACEGLAGVSESAVEINSGLQFFDGIKTADIQEILIR 73

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI    PNY  V AR LL  LR+ V            H +      E+  + I++G
Sbjct: 74  SANDLISLDHPNYQYVAARLLLFGLRKAVYNG---------HPDGHPPLLEHVKKCIDKG 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           V    +     + +   L + + ++RD+ F Y G++ + D+Y +    +G   E PQ  +
Sbjct: 125 VYDSSIVSKYTEEEWEKLNSYIDHDRDYLFTYAGIRQVVDKYLVQDRSSGEVYETPQFMY 184

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M VA+ L   + +  + +   ++Y+ +S       TP +    T   Q +SC L  V D 
Sbjct: 185 MMVAITLFQDDDKFYRLEYVRKYYDAISKHRLNIPTPIMGGVRTPLRQFASCVLVDVDDT 244

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I     +  GV+PFLK    T     
Sbjct: 245 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRSGEVQHTGVVPFLKKFESTVRCCT 304

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   +   
Sbjct: 305 QNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISQLFYQRFIDDRSI 364

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L++ +G  EF+  Y  YE           + + A  L   +L    ETG 
Sbjct: 365 SLFSPHDVPGLYEAFGTPEFDDLYVEYENDRAIPR----KTMKAQKLILDLLKERAETGR 420

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAHF 611
            +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN     
Sbjct: 421 LYIMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPIQHIDGSGEIALCILSAIN----- 473

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + ++L      AVR LD +ID   + +  AK+S    R++G+G +G    L    
Sbjct: 474 VGKLKNLEELDELCELAVRGLDALIDYQQYPVNAAKQSTLNRRSLGIGYIGLAHYLAKNG 533

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+      
Sbjct: 534 AKYDSQKAFDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYK---S 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             DE+  N  S   W+ L+ R+K  G+R+S   A  P+ + + +   +  I+P    L V
Sbjct: 591 EVDEIVPNDLS-CDWEYLRGRIKEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSV 649

Query: 792 KSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           K +  G    +   +   +     LW      D+  +DG                     
Sbjct: 650 KKSKKGPLKQIVPSYNSLKANYTLLW------DMHNNDG--------------------- 682

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYL 903
                 I+  +  QK+ DQA S N   +  +          +       +  G KT+YY 
Sbjct: 683 -----YIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKYGWKTSYYQ 737

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  A   +      VD  +N +                  + + +C+ C
Sbjct: 738 NTYDAKK-DGDDEPNVDKLINDILT----------------SEEEDCDSC 770


>gi|313632344|gb|EFR99386.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL N1-067]
          Length = 759

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/800 (30%), Positives = 375/800 (46%), Gaps = 88/800 (11%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 7   IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +     +    AR  L KL ++     +         +    Y        E 
Sbjct: 67  REAEARTDIHIAEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 121

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    +L+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 122 GIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 181

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E ++++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 182 LTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 241

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 242 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 301

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 302 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 361

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E Y+      E    + + A+ + ++++  
Sbjct: 362 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVAD-ETISKKIVKAIDIMKRVMMS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 421 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 480

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 481 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 537

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 538 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 597

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G +               A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 598 SDWNTGEY--------------FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 643

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 644 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 677

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P         A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 678 LSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 733

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           W  GLKTTYY+RS      E
Sbjct: 734 WNEGLKTTYYVRSNDIDVEE 753


>gi|326782457|ref|YP_004322857.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003405|gb|ADO97802.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 765

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 206/839 (24%), Positives = 353/839 (42%), Gaps = 98/839 (11%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
            +  ++  +K++  DG     N +++  +VE AC GL  VS+  V   +    YDG+  S
Sbjct: 1   MEKSMSNGIKVVKRDGVEEPINLEKIHKMVEHACYGLASVSASQVEINSGIQFYDGIKTS 60

Query: 197 DLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           D++  LI S+  LI    PNY  V AR LL  LR+ V     +   K           + 
Sbjct: 61  DIQEILIRSANDLISLDNPNYQFVAARLLLFGLRKSVYGVSPENHPKV---------EDQ 111

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSR 313
               IE GV  + L ++    +   + + + ++RD  F Y GL+ + D+Y +    +G  
Sbjct: 112 LSGGIESGVYDQSLIKAYSSEEFAEMDSYMDHDRDMLFTYAGLRQVVDKYLVQDRSSGKI 171

Query: 314 IEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E PQ  +M +A  L  K  ++ +      +YN +S       TP +    T   Q +SC
Sbjct: 172 YETPQYMYMLIAATLFQKYPQETRLDYVRRYYNAISKHQINIPTPVMAGVRTPLRQFASC 231

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L  V D L  IF +            G+G +   +RG+ + I G   +  GVIPFLK  
Sbjct: 232 VLVDVDDTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKF 291

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +
Sbjct: 292 ESTVRCCTQNGIRGGSATVHFPIWHSEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYE 351

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R   N   +LFSP++V  L+D +G + F+  Y +YE      +    + ++A  L   +L
Sbjct: 352 RFIANGEISLFSPNDVPGLYDAFGTDAFDACYVDYESD----QSVPRKIVNAQELVLSLL 407

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNL 602
               ETG  ++   D CN  S  +    V+ SNLC EI         +N  + E A+C L
Sbjct: 408 KERAETGRLYLMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPINHINDDAGEIALCIL 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+           D++ +    AVR L+ +ID   + ++ A++S    R++G+G +G
Sbjct: 466 SAINVGKLKT-----LDEMETLCDLAVRGLEELIDYQDYPVDAARRSTLARRSLGIGYIG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y++ EA+    +  E   ++ + AS ++AQE+G    F  + +  GV P
Sbjct: 521 LAHYLAKRGLKYSAQEALSEVHDLTEAFQYYLLRASNKIAQEKGPCQDFGRTKYSDGVLP 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           IDS     +  D L +   +   WD L+  + T G+R+S   A  P+ + + +   +  I
Sbjct: 581 IDSYK---KDVDALVLPEYN-YDWDSLRSDITTYGLRHSTLSAQMPSESSSVVSNATNGI 636

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    L +K +  G    +                                    + LK
Sbjct: 637 EPPRDYLSIKKSKKGPLKQIVPQY--------------------------------NSLK 664

Query: 843 KIHATAFEI-DPMWLIESASRRQKWIDQAQSLNL-------YLDEPSGKKLDFIYRQAWL 894
             +   +++      IE  +  QK+ DQA S N          +E     +   +   + 
Sbjct: 665 NNYTLLWDMESNKGYIEIVAVIQKFFDQAISGNWSYNPEQYPDNEVPVSVMANDFLNTYK 724

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            G KT+YY  +  A    K     ++  +  +  T+                + +C+ C
Sbjct: 725 YGWKTSYYQNTYDA----KKDGDEIETLIQELLETE----------------EEDCDSC 763


>gi|18466787|ref|NP_569594.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506103|emb|CAD09989.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 771

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/819 (25%), Positives = 337/819 (41%), Gaps = 85/819 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  L K+R++              ++    Y  +    +  G
Sbjct: 62  SAADLISPETPNYSQVAARLSLFKIRKDAFG----------QYDYPNFYN-HIVSNVSRG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V    L +     ++  L   +K +RD  F Y     L  +Y +   + G+  E PQ  +
Sbjct: 111 VYDEDLLKYYSQEEIAELGVYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQLY 170

Query: 322 MRVAMGLALK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L            + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDGCAGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 AADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+ +
Sbjct: 291 KSCSQGGVRGGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLVR 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +  +   FE  Y  YE      E    + I AV L+  ++  
Sbjct: 351 NENITLFSPHDVPGLYDAFFVDQDKFEELYLKYEAD----ESIRKKSIPAVDLFSTLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  VH SNLC EITL +        S+ E A+C L 
Sbjct: 407 RASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDSNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L      AV  LD+++D   + +  A+      R++G+G+  F
Sbjct: 467 AFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P+
Sbjct: 522 AYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPV 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRKTLDTNPETSFE--LKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK +  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPDF-AQLKDQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLM 895
           +   A               QK+ DQA S N   D         P  K L+ +   A+  
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLF-AYQQ 727

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           G+KT YY  +R          +  +   +A  V +P   
Sbjct: 728 GVKTLYYHNTRDGAGKRDDDDQVSE--PSAAEVVEPEDE 764


>gi|229916486|ref|YP_002885132.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sp. AT1b]
 gi|229467915|gb|ACQ69687.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sp. AT1b]
          Length = 755

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/793 (30%), Positives = 374/793 (47%), Gaps = 93/793 (11%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIE-KEPNY 216
              +  +++   +    +S +       + +    L++  +   L   +  +++ +EP++
Sbjct: 17  LADVSSLIQSIQTRYPHLSVERYEERAIRALETKTLTQDVVYDLLTMHALDMLKAEEPDW 76

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL----LHES 272
             V     L +L  E          +   +E    Y  ++ + +E     R+    L ++
Sbjct: 77  TFVATEMYLNRLYLEAA--------RNRGYEASMRYGNFY-QLVETLTSKRIFTSALLDT 127

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALK 331
               D+ +L   +   RD  F Y+GL+ L DRY    +     E+PQ  FM +AM L  K
Sbjct: 128 YSKEDMDHLETLIDPSRDRLFTYIGLRTLSDRYLGRDHVKNLYELPQERFMVIAMTLMQK 187

Query: 332 ETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           E E  + K   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L GI+ +  +
Sbjct: 188 EDETTRLKLVEEAYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTD 247

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A L+K  GG+G     +R  G+ I G  G S G +P++K  N+TAV+V+Q G R+G++ 
Sbjct: 248 VATLSKGGGGIGVYLGKIRSRGSDIKGFKGVSSGALPWMKQLNNTAVSVDQLGMRQGSIA 307

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL+ WH D+ EFLD + N GD+R RTHD+ T   +PDLFM+ V     W LF P E+  
Sbjct: 308 VYLDIWHKDIFEFLDAKLNNGDERLRTHDLFTGVCLPDLFMRTVEARGDWHLFDPHEIRT 367

Query: 510 LHDL----YGKEFEI---AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +       Y  E E      E Y    +  E+     + A+ L ++ +    ETG P++ 
Sbjct: 368 VMGYSLEDYFDESENGGSFTEKYMECVNTPELSRV-TVPAIDLVKRYMRSQLETGTPYMF 426

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLG 603
           F+D  N  +P +H G+++SSNLC+EI  N S                     +  VCNL 
Sbjct: 427 FRDAVNRANPNKHAGMIYSSNLCSEIAQNMSATTIEEEYTQDGKIVITKTPGDFVVCNLS 486

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SI L           D L   I   +R+LDNVID+N   + +A  +N  +RA+GLG  G+
Sbjct: 487 SIALARAVK-----ADVLERLIPIQMRMLDNVIDLNTIEVPQAMITNQKYRAVGLGTFGW 541

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L L  I + S +AV+ A++  E I++  I AS+ELA+E+GA+  F+GS W  G +  
Sbjct: 542 HHLLALEGIRWESVDAVQYAEKLYEKIAYLTIQASMELAKEKGAFGVFEGSEWHTGEYF- 600

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                               L WD L + V   G+RN+  MA+AP ++ A I G + SID
Sbjct: 601 ----------KRRNYRSHDDLDWDGLAEAVHQNGVRNAYMMAVAPNSSTAIIAGSTASID 650

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P Y+ +Y +   +    V                                   +  D   
Sbjct: 651 PVYKKVYSEEKKNYKIPVTVP-------------------------------DLTPDTNW 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYY 902
            + +AFEID +W I   + RQ+ IDQA S NLY+       +L  ++ +AW +G+K+ YY
Sbjct: 680 FYKSAFEIDQLWSIRQNAARQRHIDQAISFNLYVKNDVKATELLAMHLEAWSLGMKSIYY 739

Query: 903 LRSRSATSVEKST 915
            RS +    E  +
Sbjct: 740 TRSTTVEVDECES 752


>gi|325919222|ref|ZP_08181269.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325923020|ref|ZP_08184720.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325546490|gb|EGD17644.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325550296|gb|EGD21103.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 833

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/831 (29%), Positives = 372/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 45  PRQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 104

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             + +  D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 105 FGFVDRKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 156

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     +  ERD  F Y GL 
Sbjct: 157 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIAPERDTLFAYNGLY 216

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    N     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 217 LLATRYLATDNSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLY 276

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 277 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 336

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 337 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNG 396

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 397 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSF 456

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 457 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 515

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA--NNQFDY-- 618
           SNLCTEI  N S                     +  VCNL SINL       ++Q D   
Sbjct: 516 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLG 575

Query: 619 -DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 576 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAK 635

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  + AS+ELA+E+G YS F+GS W  G +                
Sbjct: 636 EAEDYSDELYERINYLTVQASMELAKEKGTYSVFRGSDWHTGEY--------------FR 681

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 682 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 741

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L  E                                      A+++D    +
Sbjct: 742 RRPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASV 771

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 RQNARRQRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 822


>gi|326783147|ref|YP_004323544.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005565|gb|ADO99953.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 766

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 202/788 (25%), Positives = 335/788 (42%), Gaps = 79/788 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N  ++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   INVIKRNGDKDSLNLAKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIKTSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR+              H+E      E+  +  +  
Sbjct: 65  SASDLISLEYPNYQYVASRLLLFDLRK----------ALNDHYEDHPPILEHVKKCADLD 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           V  + + E   + +   + + + Y RD+ F Y G++ + D+Y +    +G   E PQ  +
Sbjct: 115 VYDKTIIEKYSEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L  +  ++++      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 IMIALTLFQRYPKEKRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T     
Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R   N   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMANQEI 354

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L+D +G  +F+  Y  YE      E    + I    L+  +L    ETG 
Sbjct: 355 SLFSPHDVPRLYDTFGTPDFDELYLQYEAD----ESVPRKTIGGYELFNNLLKERSETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINLLAH 610
            +I   D CN  S    +  V+ SNLC EI         ++  + E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNSHSSF--LDKVNMSNLCQEITLPTEPINHIDDPNGEIALCILSAINVGKI 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +Q D          AVR L+ +ID   + +E AK+S    R++G+G +G    L   
Sbjct: 469 TQLDQMD-----ELCDLAVRALEELIDYMQYPVEAAKRSTLARRSLGIGYIGLAHYLAKN 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y  PEA ++  +  E   +H + AS  LA+E+GA   F+ + +  GV PID+     
Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNTLAKEKGACEGFRHTKYSNGVLPIDTYK--- 580

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +  DE+  N+ +   W  L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 581 KEVDEIVPNKLN-YDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                      LK  +   ++
Sbjct: 640 VKKSKKGPLKQIVPGY--------------------------------PHLKSNYTLLWD 667

Query: 851 I-DPMWLIESASRRQKWIDQAQS-------LNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           + D    I   +  QK+ DQA S        N   +E     +     + +  G KT+YY
Sbjct: 668 MKDNGGYIRITAVMQKFFDQAISGNWSYNPSNYPNNEVPMSVMTKDLIETYKYGWKTSYY 727

Query: 903 LRSRSATS 910
             +  A S
Sbjct: 728 QNTYDAKS 735


>gi|326783874|ref|YP_004324268.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003886|gb|ADO98281.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 766

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 197/835 (23%), Positives = 352/835 (42%), Gaps = 101/835 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G +   + +++  +VE AC GL  VS+  V  ++    YDG++ ++++  L+ 
Sbjct: 5   IKVVKRAGHIEPLDLEKMHKMVELACDGLAGVSASQVEIQSGIQFYDGMTTAEIQGILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI+ + PNY  V AR LL  LR+ +   +++ P                 R +++G
Sbjct: 65  SASDLIDLDAPNYQYVAARLLLFGLRKNLYGRIHELPTLLDQ----------IKRGVDKG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +    +       ++  L   + +ERD+ F Y GL+ + D+Y +     G+  E PQ  +
Sbjct: 115 IYDGDILNKYTKSEIEDLDKIIDHERDYLFTYAGLRQVVDKYLVQDRSTGALYETPQFMY 174

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +AM +  +   + +      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 LLIAMTIFAEYPPENRIDYVTRYYNAISRHKINIPTPIMGGVRTPIRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T     
Sbjct: 235 LDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  ++   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIEDKEI 354

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           TLFSP    +L + +G  +F+  Y  YE      E    RK+ A  L   +L    ETG 
Sbjct: 355 TLFSPHSCPNLFESFGTPDFDELYCRYELD----ESIPKRKVRAQELIMNLLKERAETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610
            +I   D CN  S  +    V  SNLC EITL +           E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNDHSSFK--DKVSMSNLCQEITLPTEPLQHIDAIDGEIALCILSAINVGKL 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   ++L      +VR L+ +ID   + ++ A+ +    R++G+G +G    L   
Sbjct: 469 TR-----LEELEDLCDLSVRSLEELIDYQDYPVKAAELATLGRRSLGVGYIGLAHYLAKH 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A +   +  E   ++ + +S +LA+E+G  + F  + +  G+ PID+     
Sbjct: 524 GWKYDSQDAWDAVHKLTESFQYYLLKSSNQLAKEKGCCTDFFSTKYSDGILPIDTYKRDV 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +   ++ +    +  W+ L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 DEITKVGL----KHDWESLRASIVEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 639

Query: 791 VKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +K +  G    V   +   +     LW      D++ +DG                    
Sbjct: 640 IKKSKKGPLKQVVPSYGHLKNNYTLLW------DMEGNDG-------------------- 673

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL---YLDEPSGK--------KLDFIYRQAWLMGLK 898
                  I+  +  QK+ DQA S N        P  +         L   Y+  W    K
Sbjct: 674 ------YIKVVAVMQKFFDQAISGNWSYNPTQYPDNEVPISVMAQDLLKTYKYGW----K 723

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+YY  +    S +   ++ V  +L                + +  + + EC+ C
Sbjct: 724 TSYYQNTYDMKSDDVDDVEEVKPQLE--------------KLFTELSEEQECDSC 764


>gi|294784668|ref|ZP_06749956.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486382|gb|EFG33744.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
          Length = 755

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 233/811 (28%), Positives = 380/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACEGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++  +   +E ++A V  R L+ +  REV  +                +P+   + 
Sbjct: 61  SLINTAVAMTTFEESDWAYVAGRLLMMEAEREVFHSRG---------FSYGNFPKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           IE G+    L     + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 IELGLYDERLLSY-TEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     +FYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYIIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 EPWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSVYYIRTIQRNTNNISDKEECE 751


>gi|254169166|ref|ZP_04876002.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289596591|ref|YP_003483287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621901|gb|EDY34480.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534378|gb|ADD08725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/930 (24%), Positives = 392/930 (42%), Gaps = 177/930 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    +D  +I+ AI KAF+            + D +  + E+ + +        
Sbjct: 5   IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTPEE--IADELSKIVEERIQKY------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            I  +E IQD+VE  LM+  + +  + Y++YRE R  VR A+     +            
Sbjct: 56  EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVE------------ 103

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           D   ++ N+ +    V EA   L+D   K                      +I + R + 
Sbjct: 104 DDLKLTVNAIK----VLEARYLLKDEKGK----------------------IIETPRQMF 137

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            +   Y  +      +    EV     K+ ++      +     Y    ++     RL  
Sbjct: 138 YRTARYIALVDALYFD----EVFDLSGKQKRRNEVFAGKSNLGVYEMDMLKRA-YRRLNF 192

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           +  M  D       L  + D                                        
Sbjct: 193 KGHMKVDFSEFIRILNDKWDII-------------------------------------- 214

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
                E+R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  
Sbjct: 215 -----EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA   
Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            L   H D+ EF+    +   + +   + N +  + D FM  + ++  + L +P    ++
Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPRNGEEV 386

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                      ++I A  +W  ++T  ++TG P + F D  N +
Sbjct: 387 ---------------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            P +H+G + S+N C E  L         CNLGSINL     N +  +DKL   I  A+ 
Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWDKLRKVIHIAIH 475

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI
Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  +  AS++LA++RG + +++GS W                             W    
Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK--- 563

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNE 809
              K + +RN+    IAPT TI+ I G S SI+P +  +YV+  + G+    +N      
Sbjct: 564 ---KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            K+R  + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D 
Sbjct: 621 AKKRGFYSEDLMLEI-AKSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678

Query: 870 AQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920
           A S  +    + + + ++ +Y  A+ +  K     R +S        A    +  LK  +
Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            +L  V +             ++C  D  C
Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTC 767


>gi|309797908|ref|ZP_07692289.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308118516|gb|EFO55778.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 771

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/838 (24%), Positives = 344/838 (41%), Gaps = 99/838 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++              ++    Y ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR----------YDYPNFY-QHIVKNVNKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V  + L       ++  L N +K +RD  F Y     L  +Y +   + G   E PQ  +
Sbjct: 111 VYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHIY 170

Query: 322 MRVAMGLALK-ETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L    E +     + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 SGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ +
Sbjct: 291 KSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLVR 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V D+++ +  +   FE  Y  YE      +    + + A+ L+  ++  
Sbjct: 351 SENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  V  SNLC EITL +         + E A+C L 
Sbjct: 407 RASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      + L      AV  LD+++D   + +E A+      R++G+G+  F
Sbjct: 467 AFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PI
Sbjct: 522 AYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPI 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E   N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRSSLDESGET--NFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK++  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPEF-EKLKEQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
           +   A               QK+ DQA S N   D    +        L      A+ MG
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMG 728

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
           +KT YY  +R                       D +   + L    +   + EC+  C
Sbjct: 729 VKTLYYHNTRDGAG-----------------KRDDDEPQNPLAQAVAVEPEDECDGAC 769


>gi|16330926|ref|NP_441654.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
 gi|3914655|sp|P74240|RIR1_SYNY3 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1653420|dbj|BAA18334.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
          Length = 767

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 221/820 (26%), Positives = 370/820 (45%), Gaps = 91/820 (11%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            A + +   +    +++++  DG+    N  ++  +V+ AC GL+ V+S  + +     +
Sbjct: 16  DAHAGTSQGSHQGHRIQVIRRDGSSTPLNIGKIRAVVDWACLGLE-VNSIALEAGLTTRL 74

Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
            +G+S  +++  LI  +  +    EP++  V  R  +  L ++ L               
Sbjct: 75  REGISTREIQDNLISCALEMCSPNEPDWRYVAGRLHVWSLWKDTL---------VRRGYQ 125

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y       +  G     +     + +L      +  + D  ++Y G  +L  RY L 
Sbjct: 126 YGQYLRTVQTKVTNGEYDSRILTY-SEGELQEAGCWINSDWDTDYDYAGAVLLTSRYLLP 184

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
                 E+PQ   +  A+ LA  E    +   A  FY  +++     +TP L N      
Sbjct: 185 N-----ELPQEALLTCALLLASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGG 239

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            L+SCF+  + D+L  IFG +   A ++K  GG+G + + +R  G+ + G    S GVIP
Sbjct: 240 SLTSCFIVAMEDNLESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIP 299

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           + K+ NDTA+AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     +P
Sbjct: 300 WTKLLNDTAIAVNQGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILP 359

Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           D FM+RV     WTL  P EV      +L +L+G++FE AY   E       I ++++I+
Sbjct: 360 DEFMRRVINKEDWTLVDPYEVREKMGIELAELWGEQFEGAYREIESNL-DTTITLYKRIN 418

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VC 600
           A  L+++++    ETG P+++FKD  N  +P +H+G +  +NLC E   N +  + A  C
Sbjct: 419 ARELFKQIMRTQVETGMPYLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCC 478

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL         D   +A   + AVR+LDN I++       AK  N+ +R IG+G 
Sbjct: 479 NLVSLNLAN------LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGA 532

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L    + Y     +   +   E I +    +S+ELA+ERGAY +F GS W +G+
Sbjct: 533 MGLADWLAKRRLNYDE---LADINRLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGL 589

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                  + ++       N      W++L   ++T G+RNS+  AIAP  + + + G + 
Sbjct: 590 L------IGSKPVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTA 643

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P Y   +      G   +   F                         IGN      +
Sbjct: 644 SILPVYSRFFYDKWAKGTVPIAPPF-------------------------IGNCFWFYPE 678

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDF 887
            K        +D   ++++ +  Q+W D   S+ L         + +EP    + K +  
Sbjct: 679 NK-------TMDQRKVVKAVAAIQQWTDTGISMELLFNLNAGIYFPEEPERSLNAKDIFD 731

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
               AW  G K  YY+R+     V+K   K       A  
Sbjct: 732 TLVMAWEAGCKAIYYIRT-----VQKDDFKDSSDGCVACA 766


>gi|58424691|gb|AAW73728.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 839

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/831 (28%), Positives = 369/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 51  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 110

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 111 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 162

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 163 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 222

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 223 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 282

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 283 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 342

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 343 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 402

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 403 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSF 462

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 463 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 521

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFD 617
           SNLCTEI  N S                     +  VCNL SINL           +   
Sbjct: 522 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLG 581

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 582 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 641

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 642 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 687

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 688 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 747

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L                                D        A+++D    +
Sbjct: 748 RRPVAAPGLSL------------------------------DTWPYYEKGAYKVDQFASV 777

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 778 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 828


>gi|325914791|ref|ZP_08177128.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538984|gb|EGD10643.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 833

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/831 (29%), Positives = 372/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F ++RL   +++  +     DV+      
Sbjct: 45  PRQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEAERLNRAIDQIHAEFPQLDVADYKRSV 104

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 105 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 156

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 157 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 216

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    N     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 217 LLATRYLATDNSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 276

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 277 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 336

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 337 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNG 396

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 397 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSF 456

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 457 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 515

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA--NNQFDY-- 618
           SNLCTEI  N S                     +  VCNL SINL       ++Q D   
Sbjct: 516 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLG 575

Query: 619 -DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 576 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 635

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 636 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 681

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 682 ARDYNSPQWLELSAQVSVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 741

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L  E                                      A+++D    +
Sbjct: 742 RRPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASV 771

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 822


>gi|220980069|emb|CAP72261.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|323934217|gb|EGB30641.1| ribonucleoside-diphosphate reductase [Escherichia coli E1520]
          Length = 771

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/838 (24%), Positives = 344/838 (41%), Gaps = 99/838 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGITTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++              ++    Y ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR----------YDYPNFY-QHIVKNVNKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V  + L       ++  L N +K +RD  F Y     L  +Y +   + G   E PQ  +
Sbjct: 111 VYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHIY 170

Query: 322 MRVAMGLALK-ETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L    E +     + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 SGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ +
Sbjct: 291 KSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLVR 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V D+++ +  +   FE  Y  YE      +    + + A+ L+  ++  
Sbjct: 351 SENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  V  SNLC EITL +         + E A+C L 
Sbjct: 407 RASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      + L      AV  LD+++D   + +E A+      R++G+G+  F
Sbjct: 467 AFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PI
Sbjct: 522 AYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPI 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E   N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRSSLDESGET--NFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK++  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPEF-EKLKEQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
           +   A               QK+ DQA S N   D    +        L      A+ MG
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMG 728

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
           +KT YY  +R                       D +   + L    +   + EC+  C
Sbjct: 729 VKTLYYHNTRDGAG-----------------KRDDDEPQNPLTQAVAVEPEDECDGAC 769


>gi|294664799|ref|ZP_06730123.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605430|gb|EFF48757.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 836

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/830 (28%), Positives = 370/830 (44%), Gaps = 102/830 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 48  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 107

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 108 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 159

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 160 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 219

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 220 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 279

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 280 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 339

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 340 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 399

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAY 522
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++
Sbjct: 400 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSF 459

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SS
Sbjct: 460 RRKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSS 519

Query: 583 NLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDY 618
           NLCTEI  N S                     +  VCNL SINL           +    
Sbjct: 520 NLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGA 579

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + E
Sbjct: 580 DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKE 639

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                 
Sbjct: 640 AEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FRA 685

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +      
Sbjct: 686 RDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFR 745

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V    L  E                                      A+++D    + 
Sbjct: 746 RPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASVR 775

Query: 859 SASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 776 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 825


>gi|188578921|ref|YP_001915850.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523373|gb|ACD61318.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 832

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/831 (28%), Positives = 368/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+  +  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 396 DQRLRAHDVFISVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSF 455

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 456 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 514

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFD 617
           SNLCTEI  N S                     +  VCNL SINL           +   
Sbjct: 515 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLG 574

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 575 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 634

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 635 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 680

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 681 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 740

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L                                D        A+++D    +
Sbjct: 741 RRPVAAPGLSL------------------------------DTWPYYEKGAYKVDQFASV 770

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 771 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|84622096|ref|YP_449468.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|161899022|ref|YP_199113.2| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84366036|dbj|BAE67194.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 832

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/831 (28%), Positives = 369/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 396 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSF 455

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 456 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 514

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFD 617
           SNLCTEI  N S                     +  VCNL SINL           +   
Sbjct: 515 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLG 574

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 575 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 634

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 635 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 680

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 681 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 740

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L                                D        A+++D    +
Sbjct: 741 RRPVAAPGLSL------------------------------DTWPYYEKGAYKVDQFASV 770

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 771 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|166710316|ref|ZP_02241523.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 832

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/831 (28%), Positives = 369/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQVHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 396 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSF 455

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 456 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 514

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFD 617
           SNLCTEI  N S                     +  VCNL SINL           +   
Sbjct: 515 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLG 574

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 575 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 634

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 635 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 680

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 681 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 740

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L                                D        A+++D    +
Sbjct: 741 RRPVAAPGLSL------------------------------DTWPYYEKGAYKVDQFASV 770

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 771 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|293411956|ref|ZP_06654681.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|291469511|gb|EFF12000.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
          Length = 771

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/838 (24%), Positives = 344/838 (41%), Gaps = 99/838 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+ 
Sbjct: 2   ISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY++V AR  + K+R++              ++    Y ++  + + +G
Sbjct: 62  SAADLISPEAPNYSQVAARLNIFKIRKDAFGR----------YDYPNFY-QHIVKNVNKG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V  + L       ++  L N +K +RD  F Y     L  +Y +   + G   E PQ  +
Sbjct: 111 VYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHIY 170

Query: 322 MRVAMGLALK-ETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L    E +     + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDDCAGKTRMEMVKGFYDITSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 SGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ +
Sbjct: 291 KSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLVR 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +   TLFSP +V D+++ +  +   FE  Y  YE      +    + + A+ L+  ++  
Sbjct: 351 SENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  V  SNLC EITL +         + E A+C L 
Sbjct: 407 RASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +      + L      AV  LD+++D   + +E A+      R++G+G+  F
Sbjct: 467 AFNLGAIRS-----LESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PI
Sbjct: 522 AYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPI 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E   N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRSSLDESGET--NFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK++  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPEF-EKLKEQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMG 896
           +   A               QK+ DQA S N   D    +        L      A+ MG
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMG 728

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
           +KT YY  +R                       D +   + L    +   + EC+  C
Sbjct: 729 VKTLYYHNTRDGAG-----------------KRDDDEPQNPLTQAVAVEPEDECDGAC 769


>gi|294625676|ref|ZP_06704298.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600045|gb|EFF44160.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 832

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/830 (28%), Positives = 370/830 (44%), Gaps = 102/830 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RLE  +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAY 522
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++
Sbjct: 396 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSF 455

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SS
Sbjct: 456 RRKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSS 515

Query: 583 NLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDY 618
           NLCTEI  N S                     +  VCNL SINL           +    
Sbjct: 516 NLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGA 575

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + E
Sbjct: 576 DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKE 635

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                 
Sbjct: 636 AEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FRA 681

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +      
Sbjct: 682 RDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFR 741

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V    L  E                                      A+++D    + 
Sbjct: 742 RPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|52788093|ref|YP_093921.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pestis]
 gi|145597235|ref|YP_001154699.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|229896975|ref|ZP_04512134.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
 gi|52538022|emb|CAG27447.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis]
 gi|145213003|gb|ABP42408.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|229700011|gb|EEO88051.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
          Length = 771

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/819 (25%), Positives = 334/819 (40%), Gaps = 85/819 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY +V AR  L K+R++              ++    Y  +    +  G
Sbjct: 62  SAADLISPETPNYLQVAARLNLFKIRKDAFG----------QYDYPNFYN-HIVSNVSRG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V    L +     ++  L   +K +RD  F Y     L  +Y +   + G+  E PQ  +
Sbjct: 111 VYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQLY 170

Query: 322 MRVAMGLALK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L            + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 AADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+  
Sbjct: 291 KSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLVH 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +  +   FE  Y  YE      E    + I AV L+  ++  
Sbjct: 351 NENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  VH SNLC EITL +         + E A+C L 
Sbjct: 407 RASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L      AV  LD+++D   + +  A+      R++G+G+  F
Sbjct: 467 AFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P+
Sbjct: 522 AYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPV 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRKTLDTNPETSFE--LKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK +  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPDF-AQLKDQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLM 895
           +   A               QK+ DQA S N   D         P  K L+ +   A+  
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLF-AYQQ 727

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           G+KT YY  +R          +  +   +A  V +P   
Sbjct: 728 GVKTLYYHNTRDGAGKRDDDDQVSE--PSAAEVVEPEDE 764


>gi|331083186|ref|ZP_08332302.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404575|gb|EGG84115.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 733

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/767 (31%), Positives = 378/767 (49%), Gaps = 94/767 (12%)

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVL 233
           + +   +     +   + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + 
Sbjct: 16  EYNVCKLEQGYERLKRENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLK 75

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
           T + K+  ++ + ++Q L         +EG+    + E+  + +++   + +K ER+  F
Sbjct: 76  TELAKRGIESFYEKIQYL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLF 127

Query: 294 EYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHF 351
            Y GL +L +RY +  +    +E PQ  +M +A+ LA+KE  +K K   +FY++LS    
Sbjct: 128 NYSGLDLLLNRYVIQTHDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEV 187

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+   + QLSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G
Sbjct: 188 TMATPTLSNARKPYHQLSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATG 247

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GD
Sbjct: 248 STIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGD 307

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYEN 524
           DR + HD+  A   PDLF K   ++    W L  P E+       L D YG+E+E  Y  
Sbjct: 308 DRMKAHDIFPAVCYPDLFWKMAKEDLEQKWYLMCPHEIFMVKGWRLEDCYGEEWEEKY-- 365

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             RQ    E    R I+   + R +L    ETG P+   +D  N  +P  H G+++ SNL
Sbjct: 366 --RQCIEDERIKKRSITIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNL 423

Query: 585 CTEITLNSSSEET-----------------------AVCNLGSINLLAHFANNQFDYDKL 621
           CTEI  N    E+                        VCNL S++L         D   +
Sbjct: 424 CTEIAQNMQETESISTEIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYM 480

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              + TAVR LDNVID+N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++
Sbjct: 481 KDIVGTAVRALDNVIDLNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLK 540

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ADE  E I++  + AS +LA+E+G Y  F+GS W  G +      +  E          
Sbjct: 541 FADELFEMINYFTVLASADLAEEKGTYQFFEGSDWHTGAYFEKRNYVSKE---------- 590

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W EL+ +V+  GMRN   +A APT++ + + G +  +DP  +  +++         
Sbjct: 591 ----WKELEYKVRNTGMRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPR 646

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V   L                                 D    +  A  ID  + +++  
Sbjct: 647 VAPDLSL-------------------------------DTYYYYRNAHNIDQSFSVKACG 675

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            RQ+ IDQAQSLNLY  +  + ++L  +Y +AW  G+KT YY+RS+S
Sbjct: 676 VRQRHIDQAQSLNLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722


>gi|260589756|ref|ZP_05855669.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
 gi|260539996|gb|EEX20565.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
          Length = 733

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/775 (31%), Positives = 380/775 (49%), Gaps = 94/775 (12%)

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVL 233
           + +   +     +   + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + 
Sbjct: 16  EYNVCKLEQGYERLKRENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLK 75

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
           T + K+  ++ + ++Q L         +EG+    + E+  + +++   + +K ER+  F
Sbjct: 76  TELAKRGIESFYEKIQYL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLF 127

Query: 294 EYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHF 351
            Y GL +L +RY +  +    +E PQ  +M +A+ LA+KE  +K K   +FY++LS    
Sbjct: 128 NYSGLDLLLNRYVIQTHDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEV 187

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+   + QLSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G
Sbjct: 188 TMATPTLSNARKPYHQLSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATG 247

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GD
Sbjct: 248 STIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGD 307

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYEN 524
           DR + HD+  A   PDLF K   ++    W L  P E+       L D YG+E+E  Y  
Sbjct: 308 DRMKAHDIFPAVCYPDLFWKMAKEDLEQKWHLMCPHEIFMVKGWRLEDCYGEEWEEKY-- 365

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             RQ    E    R I+   + R +L    ETG P+   +D  N  +P  H G+++ SNL
Sbjct: 366 --RQCIEDERIKKRSITIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNL 423

Query: 585 CTEITLNSSSEET-----------------------AVCNLGSINLLAHFANNQFDYDKL 621
           CTEI  N    E+                        VCNL S++L         D   +
Sbjct: 424 CTEIAQNMQETESISTEIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYM 480

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              + TAVR LDNVID+N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++
Sbjct: 481 KDIVGTAVRALDNVIDLNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLK 540

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ADE  E I++  + AS +LA+E+G Y  F+GS W  G +      +  E          
Sbjct: 541 FADELFEMINYFTVLASADLAEEKGTYQFFEGSDWHTGAYFEKRNYVSKE---------- 590

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W EL+ +V+  GMRN   +A APT++ + + G +  +DP  +  +++         
Sbjct: 591 ----WKELEYKVRNTGMRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPR 646

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V   L                                 D    +  A  ID  + +++  
Sbjct: 647 VAPDLSL-------------------------------DTYYYYRNAHNIDQSFSVKACG 675

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            RQ+ IDQAQSLNLY  +  + ++L  +Y +AW  G+KT YY+RS+S    E  +
Sbjct: 676 VRQRHIDQAQSLNLYITNNYTLRQLFHLYVEAWEAGVKTIYYVRSKSLEVEECES 730


>gi|78049717|ref|YP_365892.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325927515|ref|ZP_08188753.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
 gi|78038147|emb|CAJ25892.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542108|gb|EGD13612.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
          Length = 832

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/830 (28%), Positives = 369/830 (44%), Gaps = 102/830 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RL   +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAY 522
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++
Sbjct: 396 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSF 455

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SS
Sbjct: 456 RRKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSS 515

Query: 583 NLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDY 618
           NLCTEI  N S                     +  VCNL SINL           +    
Sbjct: 516 NLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGA 575

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + E
Sbjct: 576 DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKE 635

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                 
Sbjct: 636 AEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FRA 681

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +      
Sbjct: 682 RDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFR 741

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V    L  E                                      A+++D    + 
Sbjct: 742 RPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|312262464|gb|ADQ52759.1| NrdA ribonucleotide reductase A subunit [Aeromonas phage PX29]
          Length = 744

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 193/797 (24%), Positives = 323/797 (40%), Gaps = 78/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   SF+ ++L  I+  A +G + +    ++S    ++ +G+S  D++   I 
Sbjct: 1   MLVRKSSGITESFDKQKLYRIITFATTGTR-IDPIEIMSGIMSSITNGMSTKDIQKLAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E P+Y  V AR  +  LR++     +  P    H              +++G
Sbjct: 60  FAADRISIEQPDYQYVAARLQMYALRKQAYNQ-FDPPHLKRH----------TLELVQDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +    L     D +   L N + +ERDF   Y G+    ++Y       G   E PQ  +
Sbjct: 109 IYDPDLATKWTDEEFSELNNYIIHERDFNLAYAGVMQFKEKYLAKDRSTGELYETPQMLY 168

Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L   E T++  +   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQDEKTDRLAKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIESGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  +F +R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKMFWERLKNDDYIT 348

Query: 501 LFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSPD +  +L+DL+ K+     E YE   +       ++I A  ++         TG  
Sbjct: 349 LFSPDVQNGELYDLFYKDPVKFKELYEMLEEEP-FVRKKRIKASEIFNLFAQERTGTGRI 407

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLGSINLLAHFAN 613
           +  F D     S   +   +  SNLC EI L +         E A+C L + NL A  + 
Sbjct: 408 YPMFIDNV--NSATPYKEPIRQSNLCIEIALPTYPVKRDGSGEIALCTLAAYNLGAIES- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
               Y+   +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L    + 
Sbjct: 465 ----YEDFLNVARAAVRALDNLLDYQDYPVVQA-LAAKKRRALGIGVTNFAYFLAKNFVD 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+S  A ++   +ME + F  + AS+ELA+ERGA      + W  G+ PID      +  
Sbjct: 520 YSSGNANKLVHRTMEMMQFANLVASMELAKERGANEWHHKTKWADGLLPIDWYNKNVDN- 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +    ++ W+ L+  +K  G+RN    A  P  + + I   +  I+P    +  K 
Sbjct: 579 ---IVPNDLKMDWEWLRAEIKKYGLRNDTLSAFMPCESSSQITNSTNGIEPPRALMSTKQ 635

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI-- 851
           +  G F  +   +                                D L   + TA+++  
Sbjct: 636 SKDGVFNQLVPEV--------------------------------DMLGSEYETAWKMTK 663

Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGLKTTYYL 903
                 ++  +  QK++DQ  S N Y D           K +     +A   G+K+ YY 
Sbjct: 664 RGMKGYLDIVAIMQKFVDQMISANTYYDPAVYPGEKIPMKIVLKDMSRAQKHGVKSMYYS 723

Query: 904 RSRSATSVEKSTLKGVD 920
            +R      + T    +
Sbjct: 724 NTRDGADGTEDTSSECE 740


>gi|21244792|ref|NP_644374.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21110490|gb|AAM38910.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 832

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/830 (28%), Positives = 370/830 (44%), Gaps = 102/830 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RL+  +++  +     DV+      
Sbjct: 44  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLDRAIDQIHAEFPQLDVADYKRSV 103

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 104 FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 155

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 156 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 215

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 216 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 275

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 276 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 335

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 336 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 395

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------EIAY 522
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F          ++
Sbjct: 396 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSF 455

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SS
Sbjct: 456 RRKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSS 515

Query: 583 NLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFDY 618
           NLCTEI  N S                     +  VCNL SINL           +    
Sbjct: 516 NLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGA 575

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + E
Sbjct: 576 DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKE 635

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                 
Sbjct: 636 AEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FRA 681

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +      
Sbjct: 682 RDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFR 741

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V    L  E                                      A+++D    + 
Sbjct: 742 RPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 821


>gi|45478634|ref|NP_995490.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|45357287|gb|AAS58681.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis biovar Microtus str. 91001]
          Length = 771

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/819 (25%), Positives = 334/819 (40%), Gaps = 85/819 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+ 
Sbjct: 2   ISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALVK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY +V AR  L K+R++              ++    Y  +    +  G
Sbjct: 62  SAADLISPETPNYLQVAARLNLFKIRKDAFG----------QYDYPNFYN-HIVSNVSRG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V    L +     ++  L   +K +RD  F Y     L  +Y +   + G+  E PQ  +
Sbjct: 111 VYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQLY 170

Query: 322 MRVAMGLALK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L            + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L GI  A            G+G  +  +R LG+ I        GVIPFLK      
Sbjct: 231 AADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+  
Sbjct: 291 KSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLVH 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           N   TLFSP +V  L+D +  +   FE  Y  YE      E    + I AV L+  ++  
Sbjct: 351 NENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        +  VH SNLC EITL +         + E A+C L 
Sbjct: 407 RASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A         D L      AV  LD+++D   + +  A+      R++G+G+  F
Sbjct: 467 AFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P+
Sbjct: 522 AYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPV 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   E +     ++PW+EL+ R++  G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRKTLDTNPETSFE--LKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIE 639

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V      +LK +  +   M                 PD+   
Sbjct: 640 PPRGPVSVKSSKDGIVKMVVPDF-AQLKDQYEYLWDM-----------------PDNRGY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLM 895
           +   A               QK+ DQA S N   D         P  K L+ +   A+  
Sbjct: 682 LTKVA-------------IIQKFFDQAISANTNYDPTRFLAIRFPMMKLLEDLLF-AYQQ 727

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           G+KT YY  +R          +  +   +A  V +P   
Sbjct: 728 GVKTLYYHNTRDGAGKRDDDDQVSE--PSAAEVVEPEDE 764


>gi|15613064|ref|NP_241367.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10173114|dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus
           halodurans C-125]
          Length = 726

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 364/740 (49%), Gaps = 88/740 (11%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE+  + +   +  ++P +  +TAR  LE+L   V              +    + E   
Sbjct: 34  LESMRMKAMDEISAEQPEWTFITARIYLEELYNSVKEQRGL-------AKPYTQFYELIE 86

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM 316
             +++G+  + L       ++  L   L  E+D  F Y+GL+ L DRY   + + + +E+
Sbjct: 87  VLVDKGIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARLYDRTLMEL 146

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  FM +AM L  KE   ++     E Y  LS+ +   +TPT  N+G    QLSSCF+ 
Sbjct: 147 PQERFMVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAVGQLSSCFID 206

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GIF +  + A ++K  GGLG     +R  G+ I      S GV+P++K  N+ 
Sbjct: 207 TVDDSLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLPWMKQLNNV 266

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ TA  +PDLFM+ V 
Sbjct: 267 AVSVDQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVE 326

Query: 495 QNAGWTLFSPDEVSD-----LHDLYGKE--FEIAYENYERQADRGEIKVFRKISAVALWR 547
               W LF P E+       L D Y ++       E YE   +  ++    ++ A+ + +
Sbjct: 327 ARDNWYLFDPHEIRQKMGFSLEDSYDEQKGSGTFRERYEACVNNPDLS-RTEVPAIEIMK 385

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------- 594
           +++    ETG P++ ++D  N  +P +H G+V+ SNLCTEI  N S              
Sbjct: 386 RIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTTVVEEKTEDGKI 445

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL S++L     +     D L   I   VR+LDNVID+N   +++A++
Sbjct: 446 LITKQPGDYVVCNLSSLSLARVVED-----DVLERLIPIQVRMLDNVIDVNRIEVKQAEQ 500

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + S EA+  ADE  E I++  I AS++LA+E+GAY
Sbjct: 501 TNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQASMKLAEEKGAY 560

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W+ G +                  + +   W EL ++VK  G+RN   +A+AP
Sbjct: 561 PMFGGSDWETGEY--------------FERRQYTTDKWTELAEQVKEKGLRNGYLLAVAP 606

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            AT A I G + SIDP +Q  YV+   +    V    L  E                   
Sbjct: 607 NATTALIGGTTASIDPIFQKTYVEEKKNYRIPVTAPDLSPE------------------- 647

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I     RQ+ +DQ+ S NLY  +    K+L  
Sbjct: 648 ------------TTWYYKSAYHIDQTWSIRQNGARQRHVDQSISFNLYVSNTIRAKELLE 695

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           ++  AW  GLKTTYYLRS S
Sbjct: 696 LHLLAWKEGLKTTYYLRSTS 715


>gi|257468677|ref|ZP_05632771.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062932|ref|ZP_07927417.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688608|gb|EFS25443.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 748

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/806 (29%), Positives = 382/806 (47%), Gaps = 95/806 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +++   G   + +  ++   +  AC GL+ V+   + S       + ++   ++ +LI  
Sbjct: 3   EVINRAGIRENLDITKIREKLVRACEGLE-VNMVELESYIDSIYQENITTKKIQESLINQ 61

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIE 261
           +  +   +E ++  V  R L+ +  REV             H+    Y +++       E
Sbjct: 62  AVAMTSFEESDWTYVAGRLLMMETEREVF------------HKRGFSYGDFYKTIKTLTE 109

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +G+    L E   D ++  L   +   RD  ++Y G  +  +RY L   G+  E+PQ  F
Sbjct: 110 KGIYDSRLQEYTKD-EIKELEKVIDISRDMMYDYAGANMFVNRYLLKFKGNIYELPQEVF 168

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA+ E ++   A  FYN LS      +TP L N       LSSCF+T + D++ 
Sbjct: 169 MCIAMLLAINEEDRVAVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R   + ++G    S GV+P++K+ NDTAVAVNQ 
Sbjct: 229 SIFYNIDTIAKISKSGGGVGLNISRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQ 288

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV A L++WH+D+E FL+L+   GD R + +D+     + DLFMKRV +N  WTL
Sbjct: 289 GRRAGAVTAALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVEENLEWTL 348

Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV      +L +LYG++FE  YE  E+      +++ + I A  L+++++ +  ET
Sbjct: 349 IDPYEVRKKYGVELCELYGEKFEEIYEKLEKDTS---LELKKVIKARELFKEIMKVQIET 405

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ET 597
           G P+I FKD  N+ +   H G++ + NLC E   N S                     E 
Sbjct: 406 GMPYIFFKDRANLMNHNSHKGMIGNGNLCMESFSNFSPSKNFAEETVEEKGVRTVNLGEV 465

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNL S+NL           ++L + + TAVR+LDN ID+    I+++ K N ++R IG
Sbjct: 466 HTCNLVSLNLAEILK------EELENIVDTAVRILDNTIDLTKTPIKESDKHNVSYRTIG 519

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G MG    L    + Y   E++   DE  E I+ ++I +S  LA++RG Y +FKGSLWD
Sbjct: 520 VGTMGLADYLAREFMIYD--ESMNDIDELFEEIALYSIKSSALLAKDRGEYPAFKGSLWD 577

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+F         + R+    N      W E+ + VK  GMRN    AIAP  + + + G
Sbjct: 578 KGLFF-------QKDREWYMKNSKYADKWGEVFELVKKYGMRNGELTAIAPNTSTSLLMG 630

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + S++P++   Y++ N  G    V  +L                               
Sbjct: 631 ATASVNPTFSRFYIEKNQKGAVPRVVKYL------------------------------- 659

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWL 894
             D    +     ++P   ++  SR  KW  Q  S+ L  D     K   IY     AW 
Sbjct: 660 -KDRAWFYPEFKNVNPQTYVKIMSRIGKWTTQGVSMELIFDLNKNIKAKDIYDTFMTAWK 718

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920
            G K+ YY+R+    +   +  +  +
Sbjct: 719 NGCKSVYYIRTIQKNTNIMNEKEECE 744


>gi|326784149|ref|YP_004324542.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004881|gb|ADO99272.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 774

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 209/835 (25%), Positives = 334/835 (40%), Gaps = 93/835 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +   DG++   N +++  +VEEAC GL  VS+  V   +    YDG+S  +++  LI
Sbjct: 6   TINVEKRDGSIEPLNLEKMHKMVEEACEGLSGVSASQVEMNSGIQFYDGISTDNIQEILI 65

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI    PNY  V +R L+  LR++V        +      M   Y          
Sbjct: 66  RSASDLISLDNPNYQYVASRLLMFSLRKQVFN------KSVWQDGMPTPYDVALYNVTVN 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
            V    L +   D D   L N + + RD+ F Y GL+ + D+Y +    +    E PQ  
Sbjct: 120 KVYDEELLDKYSDEDWAKLNNYIDHGRDYLFSYAGLRQVVDKYLVQDRSSNEVFETPQYM 179

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +AM L       ++      +YN +S       TP +    T   Q +SC L    D
Sbjct: 180 YLFIAMTLFADYPATQRLDYVRRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLIDSDD 239

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G      GV+PFLK    T    
Sbjct: 240 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVAHTGVVPFLKKFESTVRCC 299

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R  +N  
Sbjct: 300 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIKNED 359

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSP +V  L+D +G + F+  Y +YE      +    + I A  L+  +L    ETG
Sbjct: 360 ITLFSPHDVPGLYDDFGTDAFDARYVDYESD----QSIPRKTIGAQELFLSLLKERAETG 415

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L ++N    
Sbjct: 416 RLYIMNIDHCNSHSSFK--DKVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAVN---- 469

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D +      AVR L+ +ID   + +  A+KS    R++G+G +G    L   
Sbjct: 470 -VGKLKNLDDMEELCDLAVRGLEELIDYQNYPVNAAEKSTKNRRSLGVGFIGLAHYLARN 528

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y  P A ++  +  E   ++ + +S ELA+E+GA   +  + +  G+ PID+     
Sbjct: 529 GEHYDDPGAWKLVHKLAESFQYYLLKSSNELAKEKGACGYYHRTKYSDGILPIDTYKR-- 586

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
              DE+     S   WD L+  +K  G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 587 -EVDEICQVELSH-DWDSLRADIKEFGLRHSTLSAQMPSESSSVVSNETNGIEPPRAYLS 644

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    V                                      LK  +   +E
Sbjct: 645 IKKSKKGPLKQVVPQFT--------------------------------TLKNNYTLLWE 672

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYRQAWLMGLK 898
           + D    I   S  QK+ DQA S N   +  +              L   Y+  W    K
Sbjct: 673 MKDNTGYINVVSVMQKFFDQAISGNWSYNPENYPDNNVPVSVMAGDLLNTYKYGW----K 728

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+YY  +                  N     +   S   L      T +  C+ C
Sbjct: 729 TSYYQNTYD-----------SKTDPNDEAPQEEEKSVEDLLQEILNTQEEACDSC 772


>gi|34763896|ref|ZP_00144798.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886330|gb|EAA23603.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 755

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/811 (28%), Positives = 378/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   AMERRKVINRDNIVEDLNIEKIREKLLRACEGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++  +   +E +++ V  R L+ +  REV  +                +P+   + 
Sbjct: 61  SLINTAVAMTTFEESDWSYVAGRLLMMEAEREVFHSRG---------FSYGNFPKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E G+    L     + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 TELGLYDERLLSY-TEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     +FYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 ETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEENGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTVGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYNTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|15921522|ref|NP_377191.1| ribonucleoside-diphosphate reductase large subunit [Sulfolobus
           tokodaii str. 7]
 gi|15622308|dbj|BAB66300.1| 831aa long hypothetical ribonucleoside-diphosphate reductase large
           subunit [Sulfolobus tokodaii str. 7]
          Length = 831

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/827 (25%), Positives = 371/827 (44%), Gaps = 118/827 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           KLK++   G +  F S ++   +         +  + V+     ++     ++ ++T  I
Sbjct: 13  KLKVLKRSGKVEEFKSDKIFSKL--------GIIPEDVMDGILNDIAQNAKDNAIDTRTI 64

Query: 204 --FSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE     P    +  +++L ++   V                          
Sbjct: 65  ADIVERNLIEHSLDHPELMDLAKKYVLARIYNHVFG------------------------ 100

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                        +   FD          ERD    Y  L++L  RY L    +   IE 
Sbjct: 101 -----------KGNWKGFD----------ERDLLLTYNALKVLEARYLLKDPNTLRYIET 139

Query: 317 PQAFFMRVAMGLA-------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA         E+E ++   +FY ++S   F+ +TPTL NSGTR   LS
Sbjct: 140 PQMMFRRVAKHLANVERQYGRSESEVKQLEEKFYKIMSELKFLPNTPTLMNSGTRLGILS 199

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 200 ACFVIPVRDSMITPNGEGIYDALRAMAVVHQQGGGTGFDFSELRPKGDIVASTAGVASGP 259

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+++ + +   V QGGKR+GA    +  WH D+EEF+  +     D +   + N +  
Sbjct: 260 VSFMRIFDVSTDVVKQGGKRRGANMGVMHVWHPDIEEFIKSKTGQLKDTQ-LQNFNISVG 318

Query: 485 IPDLFMKRVTQNAGWTLFSP------DEVSDLHDLYGKEFE------IAYENYER----- 527
           + D FM+ V +     L +P      D    +    G   E      I  E  E+     
Sbjct: 319 VYDYFMQAVERGDVVPLINPRKTKIADWDYYMSKARGYMNEEWIQEVILSELEEKGGTVD 378

Query: 528 -------------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                             E  + + ++A  L+ +++   +++G P + F D  N R P  
Sbjct: 379 LAESKIITIDEALVIAEKENAITQWVNARNLFDEIVKGAWDSGDPGLLFIDTINRRHPVW 438

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           ++G ++++N C E  L         CNLGSINL     + + D+D LA TIR AVR+LDN
Sbjct: 439 YLGKINATNPCGEEPLLPWES----CNLGSINLEKFVVDGKIDWDGLAETIRYAVRLLDN 494

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N + +++ +++    R +GLG+MG    L  L IPY S +AV ++ +  +FI +HA
Sbjct: 495 VIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDAVYLSYQLAKFIYYHA 554

Query: 695 ISASVELAQERGAYSSFKGSLWDQ---------GVFPIDSIGLLAEVRDELAMNRTSRLP 745
              S+E+A+E+G++ ++   L+            +  I  I        +   +   +L 
Sbjct: 555 FKESIEIAKEKGSFPAYDAKLYKDIWESAKDFYEILEIMGIKDKPSDYVKKLTSIVDKLD 614

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           +D+LK+     G+RN+  +++APT TI+ I G S SI+P +   ++++   G F  ++  
Sbjct: 615 FDKLKEDRIKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPL 674

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            ++ L++ +L +  ++  +    G IG+   +P  ++K+  TA E+ P + +   +  Q+
Sbjct: 675 FLDYLRKYELDNPEVVKKI-AETGMIGDNPFMPKSMRKVFRTAHEVSPEYHLLHQAAWQQ 733

Query: 866 WIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           W D   S  +    E   + ++ +Y  AW +G+K     R +S +  
Sbjct: 734 WNDSGTSKTINLRSEEPPETVERVYMLAWKLGIKGVTVYRDKSKSQQ 780



 Score = 44.7 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 24/101 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  ++V+KR+G V  F   KI                    ++  I +++ +  +  + 
Sbjct: 10  SLSKLKVLKRSGKVEEFKSDKI------------------FSKLGIIPEDVMDGILNDIA 51

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSG-----HHKITREYVL 120
           Q+ K    +    I D VE +L++          + ++YVL
Sbjct: 52  QNAKDN-AIDTRTIADIVERNLIEHSLDHPELMDLAKKYVL 91


>gi|242399121|ref|YP_002994545.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
 gi|242265514|gb|ACS90196.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
          Length = 897

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 203/915 (22%), Positives = 388/915 (42%), Gaps = 141/915 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  AI +A   V        +R  +++  + +  + R+      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAIQRAMWEVG-------VRDDNLLDKVVKDVIDRI-NELYE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y++YR++++++R  +                 
Sbjct: 57  GQVPHIENIQDIVELELMRNGLFEVAKAYIIYRKKKAEIREEKRKI-------------- 102

Query: 150 DDGTLISFNSKRLEMIVEEAC-SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   N ++L+ I +    +GL+ ++S+ ++      + +  +  +L   +   +  
Sbjct: 103 -------LNKEKLDEIDKRFSINGLRVLASRYLIKNEEGKIVE--TPKELFERVAILAAI 153

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
                P+                         ++    E           YI++  +   
Sbjct: 154 -----PDLLY---------------------DERMFSKE---------GTYIQDLKRVEY 178

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
             ++  +FD +Y     K  +   +++  +  LY            E+ +   M+V++  
Sbjct: 179 YLQNFENFDSIYTIGRFKLNK---YQFERMVNLYR-----------ELAEKGKMKVSIDE 224

Query: 329 ALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            L         + E    EF+NL+ +  FM +TP L NSG     LS+CF+  + DD+  
Sbjct: 225 FLNMLKNGEFDKYEGVIEEFFNLMVNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMES 284

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A  + A++ K  GG G +++ +R  G  +  T G + G I F+ + +  +  + QGG
Sbjct: 285 IMKAAHDVAIIQKMGGGTGLNFSKIRPEGDLVGTTTGAASGPISFMHLIDAVSNVIKQGG 344

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    LE WH D+E+F+  ++          + N +  +   F + + +   + L 
Sbjct: 345 VRRGANMGILEVWHPDIEKFIHAKEQN-VGTNILSNFNISVGMWADFWEALKEGKKYPLI 403

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                                 ++I   +L+ ++  M +    P + 
Sbjct: 404 NPRTGK---------------------------KVKEIDPRSLFEELAYMAWAKADPGVV 436

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           F D  N R+         + ++N C E  L         CNL SINL      +      
Sbjct: 437 FFDVINKRNVLVPAKGEKIRATNPCGEEPLYDYES----CNLASINLAKFVKYDDEGKPY 492

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++D+ A  I    + LDN ID+N   + +   +    R IG+G+MG   AL  L I Y 
Sbjct: 493 FEWDEYAKVIMKVAKYLDNAIDVNKFPLPEIDYNTKLSRRIGVGIMGLADALFKLGIRYN 552

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   ++ E+++F+A   S+  A+ERG +  +  + + +G  PI+           
Sbjct: 553 SKEGYDFMRKATEYLTFYAYKYSIRAAKERGPFPLYHKTEYPEGKLPIEGY--------- 603

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   LPWDEL + ++  G+RN+      PT +++ I   S  I+P +  +Y KS  
Sbjct: 604 -YHKEIWNLPWDELVEDLRKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F  V+     ELK+R L+ + ++  +  + GS+  +E IP+D++KI  TA +I    
Sbjct: 663 VGEFYYVDPIFEAELKKRGLYTDEILQKISDNYGSVQGLEEIPEDVQKIFVTAMDIHWFD 722

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910
            + + +  Q W+  + S  + + ++ + + +   Y  A  +G K     R  S +    +
Sbjct: 723 HLLAQASIQLWLTDSASKTINMPNDATVEDVKAAYLLAHALGCKGVTVYRDGSLSIQVYN 782

Query: 911 VEKSTLKGVDGKLNA 925
           VE    K +  K + 
Sbjct: 783 VEGEKRKRISAKPSE 797


>gi|289664734|ref|ZP_06486315.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670857|ref|ZP_06491932.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 827

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/831 (28%), Positives = 368/831 (44%), Gaps = 104/831 (12%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLS 183
            R A +              +  +     I F  +RL   +++  +     DV+      
Sbjct: 39  PRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSV 98

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
             +    D ++  DL   LI  +   ++   P +    AR  L +L +           +
Sbjct: 99  FGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SR 150

Query: 243 ATHHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL 
Sbjct: 151 NRFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLY 210

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--------KEKRAVEFYNLLSSFH 350
           +L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ +
Sbjct: 211 LLATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLY 270

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  
Sbjct: 271 MTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSS 330

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N G
Sbjct: 331 GSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNG 390

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------EIA 521
           D R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F            
Sbjct: 391 DQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSF 450

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              YE      E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+S
Sbjct: 451 RRKYEEVVAD-ERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYS 509

Query: 582 SNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA-----NNQFD 617
           SNLCTEI  N S                     +  VCNL SINL           +   
Sbjct: 510 SNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLG 569

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + 
Sbjct: 570 ADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAK 629

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA + +DE  E I++  I AS+ELA+E+G YS F+GS W  G +                
Sbjct: 630 EAEDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEY--------------FR 675

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +     
Sbjct: 676 ARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDF 735

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
              V    L  E                                      A+++D    +
Sbjct: 736 RRPVAAPGLSLET------------------------------WPYYEKGAYKVDQFASV 765

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
              +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS  
Sbjct: 766 RQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSND 816


>gi|167044788|gb|ABZ09456.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG8D6]
          Length = 885

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/916 (22%), Positives = 370/916 (40%), Gaps = 144/916 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +   +    K  
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTKVLDSVGKSF 126

Query: 149 MDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             +   +             I+E+     + V+  + +S+  ++ Y    +  +   +  
Sbjct: 127 DINCLRVLASRYLFRDNKHEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGMSQNIEE 186

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L                    +++    YK            L   +F   I    
Sbjct: 187 AAEYL--------------------KKLDGFSYK-----FKIGSYYLNKWHFRCLIN--C 219

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L  + MM      L              L  +   D Y                 R+
Sbjct: 220 YVELAKQGMMKVSFKEL-----------LTMLASKKF-DAYA---------------DRI 252

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +               E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I 
Sbjct: 253 S---------------EYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIM 297

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
               + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR
Sbjct: 298 KTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKR 357

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GA    +E WH D+E+F+  +   G       + N +  +   F   +    +  +TL 
Sbjct: 358 RGANMGIMEVWHPDIEKFITNKTEPGV----LENFNVSVGVWKDFWDVLVNSGDGKYTLR 413

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP + S   +                           I+A  L   +    +++  P + 
Sbjct: 414 SPKDNSSAGE---------------------------INAHQLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--SGYYEKPKEE 620

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 621 QY------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT----- 909
            + + +  Q WI  A +  + +    + + +   Y  A  MGLK     R  S       
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794

Query: 910 -----SVEKSTLKGVD 920
                SV+K  +K  D
Sbjct: 795 MTGENSVKKFEVKPSD 810


>gi|218961217|ref|YP_001740992.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729874|emb|CAO80786.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 753

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 204/651 (31%), Positives = 318/651 (48%), Gaps = 66/651 (10%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                  L++L  RYF    NG  IE       RVA  +A  + EK +R   FY L+ + 
Sbjct: 3   MELTENALKVLEKRYFRKDENGVLIEDWDKMLTRVASNIASGDEEKTRR---FYQLMDAG 59

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +F+ ++PTL N+G    QLS+CF+  + D +  IF  ++  A++ K  GG G  ++ +R 
Sbjct: 60  YFLPNSPTLMNAGGDLQQLSACFVLPIEDSMESIFETVKNAALIHKSGGGTGFSFSHLRE 119

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A +  TNG S G + FLKV N    AV QGG R+GA  A L   H  + +F+  ++N 
Sbjct: 120 ANARVRSTNGVSSGPLSFLKVFNAATDAVKQGGTRRGANMAILNVDHPQILDFITCKENP 179

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            +      + N +  I + FM+ VT +  + L SP                         
Sbjct: 180 AE----LTNFNISVGITEDFMQAVTNDDEYNLISPHTG---------------------- 213

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 +++K+ A  ++  ++ M  + G P I F D  N  +P   +G + S+N C E  
Sbjct: 214 -----AIYKKLKARDVFALIVKMAHKNGEPGIVFLDRLNNANPTPTLGKIESTNPCGEQP 268

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL     +   D+DKL   +R ++  LD VID++   + + +  
Sbjct: 269 LLPYE----ACNLGSINLALLIKDGDVDWDKLKEVVRESIDFLDAVIDVSKFPLHQIETI 324

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPYAS EAV +A + MEFI F+A   S ELAQE+GA+ 
Sbjct: 325 SQANRKIGLGVMGWADLLFQLKIPYASEEAVALAAKLMEFIDFYAKERSSELAQEKGAFP 384

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+ S++  G    + I                  PWD LK+++K  G+RN+    IAPT
Sbjct: 385 NFQESIYATGCLKREKINQ----------------PWDSLKEKIKKEGIRNATLTTIAPT 428

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  I+P +   YVK+ M G+    VN +L   L+++ +++  ++ ++    
Sbjct: 429 GTISMIADTSSGIEPQFSLAYVKNVMDGEKLIYVNKYLQKALEEKGIYNNKLLDEILTR- 487

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
           GS+  IE IPDDLKK+  TA +I P W I   +  QK+ D A S  + + +  + + +  
Sbjct: 488 GSLAGIEGIPDDLKKVFQTAHDISPEWHIRMQAAFQKYTDNAVSKTINFPNSATVEDIQS 547

Query: 888 IYRQAWLMGLKTTYYLRSRSATSV------EKSTLKGVDGKLNAVPVTDPN 932
            Y  A+ +G K     R  S  S       + ++ +  D K+   P T P 
Sbjct: 548 AYELAYHLGCKGVTVYRDGSRESQVLYLGTQTTSPEKTDKKV--APRTRPE 596


>gi|42557734|emb|CAF28708.1| putative ribonucleotide reductase alpha subunit [uncultured
           crenarchaeote]
          Length = 906

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/975 (23%), Positives = 407/975 (41%), Gaps = 164/975 (16%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+ G+  F+ SKIS AI KA MA     +  + R+ + +    +Q  + L     +
Sbjct: 21  QIRKRDKGLVDFNNSKISNAIYKALMAAGKADSKLAERLSEKVVQKMDQQFSIL----DT 76

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +ED+QD VE  L++ G  +  + Y+LYR ER  VR  +            L    
Sbjct: 77  NRVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVRDEKKKI---------LNKKD 127

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE--TYKNMYDGLSESDLETALIFSSR 207
            D    +F+   L ++       L+D +++IV      ++ +   ++  D+         
Sbjct: 128 LDEVDKAFDVNSLRVLASR--YLLRDNNNEIVEDPGLLFERVAILVTIPDI--------- 176

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
                               L      +  +  Q  T  E      EY+ +  +  +K +
Sbjct: 177 --------------------LHDSETYSSSEVVQNITEAE------EYYKKLDDFDLKLK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           + +  +  +    L   +++  D                L  +G      +     +A G
Sbjct: 211 IGNHYLNKYHFESL---IRHYID----------------LAKSGHMKISFKDLLRHIAEG 251

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
              + ++   R VE+YNL+ S  F+ +TPTL N+G +  QLS+CF+  + DD+ GI  + 
Sbjct: 252 ---QLSKYSDRIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSACFVLDMKDDMSGIMKSS 308

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            + AM+ K  GG+G +++ +R  G  +  T+G + G I F+++ +     V QGGKR+GA
Sbjct: 309 TDAAMIFKSGGGVGINYSNLRPEGDIVASTSGVASGPISFMRIIDTITDVVKQGGKRRGA 368

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               +E+WH D+E+F+  +   G       + N +  I             W+ F    +
Sbjct: 369 NMGIMESWHPDIEKFVTAKTKPGVFE----NFNVSVGI-------------WSDFWQSII 411

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++ +  Y               +    +  ++I +  L   +    +++  P + F D  
Sbjct: 412 NENNHKY------------NLKNPTTQEPIKQIDSHQLLDLITFSAWKSAEPGVIFFDNI 459

Query: 568 NIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDK 620
           N  +P  +V  G + ++N C E +L         CNLGSINL           ++FD+ +
Sbjct: 460 NKYNPCINVKEGPLRATNPCGEQSLYPYES----CNLGSINLANFVKRSVDGKHEFDWQR 515

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               IR + R LDNVID+N + +E+ + +    R IGLG+MG    L  L IPY S E  
Sbjct: 516 YEQAIRLSTRFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLGIPYNSKEGY 575

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF-PIDSIGLLAEVRDELAMN 739
           +  +   E +S++++  SV +A+ R  +  F  + + +G   P+     + +        
Sbjct: 576 DFMNRVAEALSYYSMEESVAIAKARDPFPLFNQTDYVEGKMIPVAGYYEIPK-------- 627

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           R     WD L ++++  G+RNS    IAPT T++ I   S  ++P +  ++ K    G F
Sbjct: 628 RYHSYDWDSLIEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKRVTVGRF 687

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              N    N LK+  L+++ +++ +  + GS+  +  IP+ L+KI  TA ++     + +
Sbjct: 688 FYTNRIFENILKENGLYNDEILTKIANNYGSVRGLPEIPEWLQKIFVTAIDVHWTDHLMA 747

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA---------- 908
            +  QKWI  A +  + +    + + +   Y  +  MGLK     R  S           
Sbjct: 748 QAVWQKWISNAIAKTINMPSDVTVEDIKAAYLLSHEMGLKGVTVYRDGSRHEQVLHITGN 807

Query: 909 ----------------------------TSVEK--STLKGVDGKLNAVPVTDPNSSTHSL 938
                                       T V+K     +  +   N V V+     T+ +
Sbjct: 808 DKEKKFIVKPSSHVVDHIHSNIKQDYVMTQVDKVFKDAEQAEPADNPVSVSQAKLKTNMI 867

Query: 939 GIPSSCTSDTECEVC 953
             PS      +C  C
Sbjct: 868 ANPSDYMEYEKCPSC 882


>gi|237738721|ref|ZP_04569202.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
 gi|229423824|gb|EEO38871.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
          Length = 755

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/811 (28%), Positives = 380/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   TNERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ T+   +E ++A V  R L+ +  REV  +                + +     
Sbjct: 61  SLINTAVTMTSFEESDWAYVAGRLLMMEAEREVYHSR---------KFSYGDFAKTIKHM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLTY-TEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTLF P E+      +L +LYG EFE  YE  E+     +IK+ R +SA  L++ ++ 
Sbjct: 351 ESWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLM 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + 
Sbjct: 580 GSKWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W  Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSVYYIRTIQKNTNNISEKEECE 751


>gi|237742882|ref|ZP_04573363.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
 gi|229430530|gb|EEO40742.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
          Length = 755

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/844 (28%), Positives = 388/844 (45%), Gaps = 123/844 (14%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ ++   +E ++A V  R L+ +  REV  +                + +   + 
Sbjct: 61  SLINTAVSMTTFEESDWAYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLSY-TEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E  ++     + + +SA  L++ ++ 
Sbjct: 351 EAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINEMFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             AW  G K+ YY+R+     ++K+T                          +S +   E
Sbjct: 721 ITAWKEGCKSVYYIRT-----IQKNT--------------------------NSISDKEE 749

Query: 950 CEVC 953
           CE C
Sbjct: 750 CESC 753


>gi|256027985|ref|ZP_05441819.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D11]
 gi|289765930|ref|ZP_06525308.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
 gi|289717485|gb|EFD81497.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
          Length = 755

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/811 (28%), Positives = 384/811 (47%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ ++   +E +++ V  R L+ +  REV  +      +   ++    +P+   + 
Sbjct: 61  SLINTAVSMTTFEESDWSYVAGRLLMMEAEREVYHS------RGFSYDN---FPKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+  + L     + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDKRLLSY-TEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 ETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLT------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKVMAKIGSWVTQGVSMEMVFDLNKDIKAKNIYDAL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|225568011|ref|ZP_03777036.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
 gi|225163185|gb|EEG75804.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
          Length = 741

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/773 (30%), Positives = 359/773 (46%), Gaps = 94/773 (12%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREV 232
            +     +  +       GL++ +  + L  ++  L  +E P +  + AR L        
Sbjct: 23  PEYDLAQLYQKYASLQKPGLTDKEQLSLLTKAAVELTTQEAPGWEMIAARLL-------- 74

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   + A        + E      +E +    + E     ++   A  ++ +R   
Sbjct: 75  YAGFRDSLEDAMKSRGIRSFYEKIVYLTKENLYGSYILEHYSRQEIEAFAKLIEEDRSRL 134

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFH 350
           F Y GL +L +RY +    G  +E PQ  FM ++M LA+KE E   +    FY +LS   
Sbjct: 135 FTYSGLDLLLNRYVIRTRKGVILETPQEMFMGISMHLAMKEKENRSEWVKRFYGMLSLLK 194

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++KY GG+G  +  VR  
Sbjct: 195 VTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDSFAKVSKYGGGMGMYFGKVRAG 254

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ I G  G + GVI ++K+ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N G
Sbjct: 255 GSAIRGFEGAAGGVIRWIKLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLKLRTNNG 314

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYE 523
           DDR + HD+  A   PD F K    +    W L  P EV       L D YGKE+E  Y 
Sbjct: 315 DDRMKAHDVFPAVCYPDYFWKMARDHIEGDWYLMCPHEVLTVKGYALEDCYGKEWEEKYL 374

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +        E    R +    + R ++    ETG P++  +D  N  +P  H G+++ SN
Sbjct: 375 DCVAD----ERISKRVLPIKEIIRLIIRSAVETGTPFVFNRDEVNRMNPNGHKGIIYCSN 430

Query: 584 LCTEITLN-----------------------SSSEETAVCNLGSINLLAHFANNQFDYDK 620
           LCTEI  N                       +   E  VCNL S++L     +   D  +
Sbjct: 431 LCTEIAQNMGAVEEVRQSIETVDGETVVVTVTKPGEFVVCNLASVSLGHIDVS---DEKE 487

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +  T+ +A+R LDNVID+N   +  AK +N  +R +GLG+ G+   L    I + S E +
Sbjct: 488 IYRTVSSAMRALDNVIDLNFFPVPYAKLNNEKYRPVGLGVSGYHHMLAKHGIQWESEEHL 547

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
             AD+  + +   AI+AS ++A+E+G Y+ F+GS W  G +                  +
Sbjct: 548 AFADKVFDTLHRAAIAASCDIAEEKGVYACFEGSDWQTGAYFDK--------------RK 593

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W++L+ R  + G+RN   +A APT++ + I G +  +DP     Y++   +G   
Sbjct: 594 LTGAAWEQLRARAASCGVRNGYMLAAAPTSSTSIIAGTTAGLDPVMHRFYLEEKKNGLVP 653

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V      EL     W                            +  A  ID  W + + 
Sbjct: 654 RVAP----ELSMDTFW---------------------------YYKNAHLIDQTWSVRAC 682

Query: 861 SRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             RQ+ IDQAQS+NLY  +E + + +  +Y  AW  G+KT YY+RSRS    E
Sbjct: 683 GVRQRHIDQAQSMNLYITNEYTFRNVLDLYLLAWECGVKTVYYIRSRSLEVEE 735


>gi|167045242|gb|ABZ09901.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG9M20]
 gi|167045330|gb|ABZ09987.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG10D8]
          Length = 885

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/916 (22%), Positives = 370/916 (40%), Gaps = 144/916 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +   +    K  
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTKVLDSVGKSF 126

Query: 149 MDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             +   +             I+E+     + V+  + +S+  ++ Y    +  +   +  
Sbjct: 127 DINCLRVLASRYLFRDNKHEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGMSQNIEE 186

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L                    +++    YK            L   +F   I    
Sbjct: 187 AAEYL--------------------KKLDGFSYK-----FKIGSYYLNKWHFRCLIN--C 219

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L  + MM      L              L  +   D Y                 R+
Sbjct: 220 YVELAKQGMMKVSFKEL-----------LTMLASKKF-DAYA---------------DRI 252

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +               E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I 
Sbjct: 253 S---------------EYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQSIM 297

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
               + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR
Sbjct: 298 KTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKR 357

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GA    +E WH D+E+F+  +   G       + N +  +   F   +    +  +TL 
Sbjct: 358 RGANMGIMEVWHPDIEKFITNKTEPGV----LENFNVSVGVWKDFWDVLVNSGDGKYTLR 413

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP + S   +                           I+A  L   +    +++  P + 
Sbjct: 414 SPKDNSSAGE---------------------------INAHQLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRTADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--SGYYEKPKEE 620

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 621 QY------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT----- 909
            + + +  Q WI  A +  + +    + + +   Y  A  MGLK     R  S       
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794

Query: 910 -----SVEKSTLKGVD 920
                SV+K  +K  D
Sbjct: 795 MTGENSVKKFEVKPSD 810


>gi|266623613|ref|ZP_06116548.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864590|gb|EFC96888.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
          Length = 640

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/682 (32%), Positives = 332/682 (48%), Gaps = 85/682 (12%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFM 322
           +    + E     ++      L   RD  F Y GL++L  RY +    +  +E PQ  F+
Sbjct: 5   LYGDYILEHYTKEEIETCEGFLDGTRDQLFTYSGLELLLSRYVIRSRENVPLESPQEMFL 64

Query: 323 RVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E  ++ +    FY++LS+     +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 65  GIALHLAMLEKNDRLEWVRRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLD 124

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q 
Sbjct: 125 GIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVIRWIKLANDTAVAVDQL 184

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   P+LF K   ++  A W
Sbjct: 185 GVRQGAVAVYLDAWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPNLFWKLAKEDIDADW 244

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            L  P E+       L D YG+E+E  Y  +E  AD       R I    L R +L    
Sbjct: 245 YLMCPHEILTVKGYSLEDSYGREWEERY--WECVADHRIH--KRVIPVKELVRLILKSAV 300

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------------------- 594
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N S                     
Sbjct: 301 ETGTPFTFNRDLVNEANPNSHKGIIYCSNLCTEIAQNMSPVEQVEQRIETVDGETVVVTV 360

Query: 595 ---EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL S++L      N+   +++    + AVR LDNVID+N   +  A+ +N 
Sbjct: 361 TKPGDFVVCNLASLSLGKIDVTNR---EEVTRLTQYAVRALDNVIDLNFFPVPYARINNM 417

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+ G+   L    I + S E +   D   E+I++ AI AS + A+E+G Y  F
Sbjct: 418 KYRPIGLGVSGYHHMLAKNGISWESEEHLAFTDRVFEWINYAAIEASCDNAREKGCYELF 477

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G +                  +     W  LK++    GMRN   +AIAPT++
Sbjct: 478 EGSDWQTGAY--------------FEKRKYHSEEWLRLKEKTAANGMRNGWLIAIAPTSS 523

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + + G +  +DP     Y++   +G    V   L  E      W               
Sbjct: 524 TSMLAGTTAGLDPIMNRYYLEEKKNGLVPRVAPDLSPE----TFWQ-------------- 565

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        +  A  ID  W + +   RQ+ +DQAQS+NLY  +E + +++  +Y 
Sbjct: 566 -------------YKNAHYIDQQWSVRAGGIRQRHVDQAQSMNLYITNEYTLRQVLNLYI 612

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  G+KT YY+RSRS    E
Sbjct: 613 LAWECGVKTIYYIRSRSLEVEE 634


>gi|255658864|ref|ZP_05404273.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849269|gb|EEX69276.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
          Length = 755

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/776 (29%), Positives = 371/776 (47%), Gaps = 97/776 (12%)

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVL 233
           D S+ +   E +  +   L  ++   AL+ ++  L   E P++ K+ AR       R++ 
Sbjct: 39  DFSALVEKYEVF--VKPSLQAAEKLQALVRAAVELASAEAPHWDKIAARLRYLVFARQLS 96

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
               +  +  T+   +  Y         +G+    + E   + +L   A  +  ER+  +
Sbjct: 97  ED--EARRGITNFVAKLRY------LTAKGLYGSYILEHYTERELSAAARFMAEERNHLY 148

Query: 294 EYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFH 350
            Y GL +L  RY +H +    +E PQ  ++ +A+ LA+ E    +      FY++LS   
Sbjct: 149 TYAGLDLLLSRYVIHTHHGVALESPQEMYLGIALHLAMLELPAVRMDWVRRFYDMLSLQQ 208

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              +TPTL N+   + QLSSCF+ TVPD L GI+ +L   A ++K+ GG+G  +  VR  
Sbjct: 209 VTMATPTLANARKPYHQLSSCFIDTVPDSLEGIYRSLDSFAKVSKWGGGMGLYFGKVRAT 268

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N G
Sbjct: 269 GAAIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGACAVYLDAWHKDLPEFLQLRTNNG 328

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYE 523
           DDR + HD+  A   PDLF K   +  +A W L  P E+       L D +G+E+E  Y 
Sbjct: 329 DDRMKAHDIFPAVCYPDLFWKLAKEDLDAPWFLMDPHEIEMVMGYALEDFWGEEWEKRYR 388

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    +    R IS   + R +L  + ETG P+  ++D  N  +P    G+++ SN
Sbjct: 389 ACVAEPRIDK----RVISVKEIVRLILKSVVETGTPFAFYRDTVNRLNPNPQAGMIYCSN 444

Query: 584 LCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDYDK 620
           LCTEI  N S                         +  VCNL S+NL      +   +++
Sbjct: 445 LCTEIAQNMSPVEAVSTEIRTKDGDTVVQVTTRPGDFVVCNLASLNLGRIDVTS---HEE 501

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L + +RTAVR LDNVID+N   +  AK +N  +R+IGLG+ G+   L    I + S E +
Sbjct: 502 LRTVVRTAVRALDNVIDLNEAPLAYAKLTNAKYRSIGLGVSGYHHMLAKNAIRWESEEHL 561

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
              D+    I++ AI AS +LA E+G Y  F GS W  G +                   
Sbjct: 562 AFVDDVFARINYAAIEASSDLAAEKGTYGCFAGSDWQTGAYFKK--------------RG 607

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W +L  +V+  GMRN+  +A+APT++ + + G +  +DP  +  +++        
Sbjct: 608 YMSEAWQKLAAKVRAQGMRNAYLLAVAPTSSTSILVGTTAGVDPIMKRFFLEEKKGAILP 667

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            +      +L  +  W                            + +A  +D  W + +A
Sbjct: 668 RIAP----DLSMKTYW---------------------------YYKSAHTVDQNWSVRAA 696

Query: 861 SRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             RQ+ IDQAQS+NLY+    + +++  +Y +A+  G+KT YY+RS+S    E  +
Sbjct: 697 GVRQRHIDQAQSVNLYITNDFTFRQVLALYIRAYEEGVKTIYYVRSKSLEVEECES 752


>gi|262067227|ref|ZP_06026839.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379060|gb|EFE86578.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 755

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/811 (28%), Positives = 380/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   TNERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ T+   +E +++ V  R L+ +  REV  +                + +     
Sbjct: 61  SLINTAVTMTSFEESDWSYVAGRLLMMEAEREVYHSR---------KFSYGDFAKTIKHM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLTY-TEEELNQISQLIDLNRDMVYDYAGANMLVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T +
Sbjct: 171 TFMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTLF P E+      +L +LYG EFE  YE  E+     +IK+ R +SA  L++ ++ 
Sbjct: 351 ESWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISLNLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLM 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTVGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + 
Sbjct: 580 GSKWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W  Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWTTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 ITAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|254303615|ref|ZP_04970973.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323807|gb|EDK89057.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 755

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/811 (28%), Positives = 377/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   AMERRKVINRDNIVEDLNIEKIREKLLRACEGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++  +   +E +++ V  R L+ +  REV  +                + +   + 
Sbjct: 61  SLINTAVAMTTFEESDWSYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLSY-TEEELNQIAQLIDVNRDMVYDYAGANMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E   E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKAGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 ETWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEEGNTSIRRS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 ITAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|254169182|ref|ZP_04876017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621840|gb|EDY34420.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/930 (24%), Positives = 390/930 (41%), Gaps = 177/930 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    +D  +I+ AI KAF+            + D +  + E+ + +        
Sbjct: 5   IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTPEE--IADELSKIVEERIQKY------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            I  +E IQD+VE  LM+  + +  + Y++YRE R  VR A+     +            
Sbjct: 56  EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVE------------ 103

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           D   ++ N+ +    V EA   L+D   +                      +I + R + 
Sbjct: 104 DDLKLTVNAIK----VLEARYLLKDEKGR----------------------IIETPRQMF 137

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            +   Y  +      +    EV     K+ ++      +     Y    ++     RL  
Sbjct: 138 YRTARYIALVDALYFD----EVFDLSGKQKRRNEIFAGKSNLGVYERDMLKRA-YRRLNF 192

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
           +  M  D       L  + D                                        
Sbjct: 193 KGHMKVDFSEFIRILNDKWDII-------------------------------------- 214

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
                E+R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  
Sbjct: 215 -----EERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA   
Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            L   H D+ EF+    +   + +   + N +  + D FM  + ++  + L +P    ++
Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVMDEFMDALLRDDYYPLRNPRNGEEV 386

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                      ++I A  +W  ++T  ++TG P + F D  N +
Sbjct: 387 ---------------------------KRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            P +H+G + S+N C E  L         CNLGSINL     N +  + KL   I  A+ 
Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPYES----CNLGSINLSLFVENGKIKWHKLRKVIHIAIH 475

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI
Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  +  AS++LA++RG + +++GS W                             W    
Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW-----------------------------WK--- 563

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNE 809
              K + +RN+    IAPT TI+ I G S SI+P +  +YV+  + G+    +N      
Sbjct: 564 ---KGMKIRNATTTTIAPTGTISIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            K+   + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D 
Sbjct: 621 AKKGGFYSEDLMLEI-AKSGSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678

Query: 870 AQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920
           A S  +    + + + ++ +Y  A+ +  K     R +S        A    +  LK  +
Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            +L  V +             ++C  D  C
Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTC 767


>gi|255928975|ref|YP_003097287.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
 gi|255705261|emb|CAR63250.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
          Length = 772

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/834 (24%), Positives = 337/834 (40%), Gaps = 95/834 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +K+    G + + N  ++  +VEEAC GL   VS+  V   +    +DG+   D++  L+
Sbjct: 7   IKVKKRSGAVEALNLDKIHKMVEEACEGLGSGVSASQVEMNSGLQFFDGIETKDIQEILV 66

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI    PNY  V AR LL  +R++V    +     +          E+  + + +
Sbjct: 67  RSASDLISLDTPNYQFVAARLLLFAVRKQVFGAGWVNGHPSVF--------EHATKCVSK 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
           GV    +       +   + + + ++RD  F Y GL+ + D+Y +    +G   E PQ  
Sbjct: 119 GVYDGDILGKYSLEEWSKINSWIDHDRDMLFTYAGLRQVVDKYLVQDRSSGEMYETPQYM 178

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A+ L      + +      +YN +S       TP +    T   Q +SC L    D
Sbjct: 179 YMMIAVTLFQNYPTETRLEYVKRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLVDSDD 238

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 239 TLDSIFTSDMAIGRYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R   N  
Sbjct: 299 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFINNEE 358

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G   F+  Y  YE   D  +    R+I A  L   +L    ETG
Sbjct: 359 ISLFSPHDVPGLYDAFGTPGFDDLYRAYEFDPDVPQ----RRIGAQELLLALLKERAETG 414

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S       V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 415 RVYIMNIDHCNEHSSF--TDKVNMSNLCQEITLPTDPLQHIDGDGEIALCILSAINVGKI 472

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D L +    AVR L+ +ID   + +  A+ S    R++G+G +G    L   
Sbjct: 473 NK-----LDDLENLCDLAVRGLEELIDYQDYPVRAAELSTLNRRSLGIGYIGLAHYLAKH 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y  P A ++  +  E   ++ + +S  +A+E+G    F  + + QG+ PID+     
Sbjct: 528 GEHYDDPAAWKLVHDLSESFQYYLLKSSNTVAKEKGKCGYFDRTKYAQGILPIDTYKRDI 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +    R  W+ L+  + T G+R+S   A  P+ + + +   +  I+P    + 
Sbjct: 588 DEFCGTEL----RHDWESLRTSITTHGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYMS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                          GS+ N   +  D+K        
Sbjct: 644 VKKSKKGPLKQIVPQY----------------------GSLKNNYTLLWDMK-------- 673

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYRQAWLMGLKT 899
            D    I+  +  QK+ DQA S N   +  +              L   Y+  W    KT
Sbjct: 674 -DNDGYIKVVAAMQKFFDQAISGNWSYNPENYDNNEVPVSVMAGDLLKTYKYGW----KT 728

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +YY  +    S E    +     +  +                  T + +C+ C
Sbjct: 729 SYYQNTYDIKSDEPQLTEERKESIEDLLNQILE------------TEEEDCDSC 770


>gi|154505111|ref|ZP_02041849.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
 gi|153794590|gb|EDN77010.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
          Length = 763

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/812 (29%), Positives = 381/812 (46%), Gaps = 99/812 (12%)

Query: 139 APIAPKLKIMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
             ++ +   ++ D   +  +     ++    E C  L+ +++K     T ++        
Sbjct: 13  NKLSEEFSNVLPDEARLKLDAILLEIQTDFPEICYSLEYLNTKFRSFLTPQSTCG----Q 68

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            LE+    ++     + P +  + AR L  +         +   Q+ T  E+   Y +  
Sbjct: 69  KLESLFQAAAELTTAEAPKWEFIAARLLYFQ-------FSFHLKQEETRRELSDFYKKLV 121

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IE 315
                + +    + E     +L+     LK ER+  F + GL +L  RY +  +    +E
Sbjct: 122 Y-LTRQNLYGSYILEHYSREELLLAETYLKAERNNLFTFSGLDLLLKRYVIRTHDHIPLE 180

Query: 316 MPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            PQ  F+ +A+ LA+ E  ++     +FY++LS      +TPTL N+   + QLSSCF+ 
Sbjct: 181 SPQEMFLGIALHLAMNERNDRMLWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFID 240

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPD L GI+ ++   A ++K+ GG+G  +  VR  G++I G  G + GVI ++++ NDT
Sbjct: 241 TVPDSLEGIYRSIDNFAQVSKFGGGMGMYFGKVRASGSNIRGFEGAAGGVIRWIRLVNDT 300

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   
Sbjct: 301 AVAVDQLGMRQGAVAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMAK 360

Query: 495 QNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           ++    W L  P E+       L D +G+E+E  Y +  + A   +    R ++   + R
Sbjct: 361 EDMDQNWYLMCPHEIFQAKGYHLEDYFGEEWERRYLDCVQDARISK----RTVTLKDIIR 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---------------- 591
            +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N                
Sbjct: 417 LVLRSAAETGTPFTFNRDTVNRMNPNGHAGMIYCSNLCTEIAQNMQAIEEVSKEVQTTDG 476

Query: 592 -------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                  +   E  VCNL S++L         D   +   + TAVR LDNVID+N +   
Sbjct: 477 DTVVVTVTRPGEFVVCNLASLSLGHLPVT---DTSYMEEIVSTAVRALDNVIDLNFYPTP 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            AK +N  +R+IGLG+ G+   L    I + S E ++ AD   E I++ AI AS  LA+E
Sbjct: 534 YAKLTNQKYRSIGLGVSGYHHMLAKHGIIWESEEHLKFADTVFETINYAAILASTNLAEE 593

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           + +YS F GS W  G +         E RD           W  L+K+V T GMRN+  +
Sbjct: 594 KESYSLFNGSDWQSGAYF--------EKRD------YHSEKWLALQKKVATQGMRNAYLL 639

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+APT++ + I G +  +DP  +  +++         V      EL     W        
Sbjct: 640 AVAPTSSTSIISGTTAGLDPILKRYFLEEKKGSMLPRVAP----ELSPATYW-------- 687

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
                               +  A  ID  + I +   RQ+ IDQAQS+N+Y+    + +
Sbjct: 688 -------------------YYKNAHLIDQTYSIRACGVRQRHIDQAQSMNIYITNDFTMR 728

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ++  +Y +AW  G+KT YY+RS+S    E  +
Sbjct: 729 QIFNLYLKAWEEGVKTIYYVRSKSLEVEECES 760


>gi|238695378|ref|YP_002922571.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
 gi|220029514|gb|ACL78448.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
          Length = 751

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 192/795 (24%), Positives = 324/795 (40%), Gaps = 70/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    + EG
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPRS-----------FIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERDF   Y G   L ++Y +     G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E        + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y ++ E   E YE       I+  ++I A  L+   +T    T   
Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEAAEKDPSIRK-KRIKARDLFELFMTERSGTARI 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 408 YPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YED--ANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G+F  V   + +    + L+D A     K      GN   +                
Sbjct: 638 SKEGNFRQVVPNVEH---NQGLYDYAWSLAKK------GNKPYLT--------------- 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSR 906
                  +   KW+ Q+ S N Y D  + +K       +       W  G K  YY  +R
Sbjct: 674 -----QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTR 728

Query: 907 SATSVEKSTLKGVDG 921
             +  +   ++    
Sbjct: 729 DGSGTDDYEIETPKA 743


>gi|330004286|ref|ZP_08304844.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328536658|gb|EGF62980.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 775

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/796 (25%), Positives = 322/796 (40%), Gaps = 84/796 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++I+  +G+  + + ++   +V  A  G+  VS+  V      ++ DG++ S +  ALI 
Sbjct: 2   IRIIKRNGSAEALSEEKYNRVVMWATDGVDGVSASAVAMGAAASIVDGMTTSQVHDALIK 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + PNY++V AR  + K+R++              +E    Y E+  + +  G
Sbjct: 62  AAADLISADSPNYSQVAARLSIFKIRKDAHG----------QYEYPDFY-EHILKNVTRG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
           V    +       ++  L   +K ERD  F Y     L  +Y +   +NG   E PQ  +
Sbjct: 111 VYDSEIMHKYSCEEIDELGAYMKPERDDNFGYAATTQLRGKYLVQHRVNGEIYESPQHIY 170

Query: 322 MRVAMGLALK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           M V M L            + +    FY++ S+F     TP +    T   Q SSC L  
Sbjct: 171 MLVGMCLYQDWNNGDMGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIE 230

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G ++  +R LG+ I        GVIPFLK+     
Sbjct: 231 SGDSLKSINATTSAIVEYISQRAGIGVNFGSIRALGSPIRNGEATHTGVIPFLKLFQAAV 290

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  AY   WH++    L L+ N G D  R   M+    +  L  +R+ +
Sbjct: 291 KSCSQGGVRGGAATAYYPLWHLEANSLLVLKNNRGVDSNRVRHMDYGVELNRLMYRRLIE 350

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L + +     EFE  Y  YE      +      + AV L+  ++  
Sbjct: 351 GGAITLFSPHDVPGLLNAFYADQDEFERLYVQYENDPSIRK----ESVPAVDLFSSLMQE 406

Query: 553 LFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNS--------SSEETAVCNLG 603
              TG  +I   D  N        V  +  SNLC EI L +         + E A+C L 
Sbjct: 407 RASTGRIYIANIDHMNTHGAFDEAVAPIKQSNLCAEIALPTKPLAFTDDPNGEIALCTLS 466

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           + NL A  +        L      AV  LD ++D   + +  A+      R++G+G+  F
Sbjct: 467 AFNLGALES-----LADLEEVAFYAVSALDCLLDYQDYPMFAAETPAKARRSLGIGVTNF 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+  +  ++  E+ E + F+ + AS  LA ++GA   F  + + +G+ PI
Sbjct: 522 AYWLAKNGAKYSGVDGNKLVHETFEAVQFYLLKASNLLASDKGACEWFGQTKYAKGLLPI 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D      +   EL  N    L WD L+K ++  G+RNS   A  P  T + I   +  I+
Sbjct: 582 DHYRKQLDA-SELNANHPLLLDWDGLRKDIERYGLRNSTLSAQMPCETSSQITNSTNGIE 640

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VKS+  G   +V                                      +  
Sbjct: 641 PPRGPVSVKSSKDGVVKMVVPEFSR--------------------------------IGD 668

Query: 844 IHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWL 894
            +   ++I D    +   +  QK+IDQ+ S N   D         P  K L  +   A+ 
Sbjct: 669 AYEYLWDIEDNFGYLTKVAIMQKFIDQSISANTNYDPARFASGRVPMQKMLTDL-LDAYR 727

Query: 895 MGLKTTYYLRSRSATS 910
           MG+KT YY  +R    
Sbjct: 728 MGVKTLYYHNTRDGAG 743


>gi|260497962|ref|ZP_05816078.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196470|gb|EEW94001.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
          Length = 755

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/811 (28%), Positives = 379/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ ++   +E +++ V  R L+ +  REV  +                +P+   + 
Sbjct: 61  SLINTAVSMTTFEESDWSYVAGRLLMMEAEREVFHSRG---------FSYGDFPKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLSY-TEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL    E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 ETWTLLDSYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDAL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|326536453|ref|YP_004300884.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
 gi|312262799|gb|ADQ53055.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
          Length = 751

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/794 (24%), Positives = 322/794 (40%), Gaps = 73/794 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G    F+  ++  +V+ AC GL+      +L      + +G+S  D++  +I ++
Sbjct: 5   VLKSSGITEEFSFDKIFKVVDFACQGLEA-DPHTILEAAKPAIMEGMSTKDIQKLVIKAA 63

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             LI   EP+Y  V  R  +  LR++V    +  P             ++    +  G  
Sbjct: 64  VDLISVDEPDYQYVAGRLTMYALRKKVYNQ-FDPPH----------IYDHVKGLVASGHY 112

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
            R L     + +   L   + + RD  F Y G     ++Y +    NG+  E PQ  +M 
Sbjct: 113 DRDLIYKYSEKEYEILQGIIDHTRDMNFTYAGAMQYKEKYLVKDRSNGTIYETPQFAYML 172

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            AM L  +E   ++ +  ++FYN  S+F     TP L    T   Q SSC      D L 
Sbjct: 173 QAMCLHQEEDVSKRLEYVIDFYNAASNFEISLPTPILSGVRTPTRQFSSCVKIESGDSLE 232

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +          G+G +   +R  G+ I        GVIPF K       + +QG
Sbjct: 233 SIGETSKAIMKYISRRAGIGINGGAIRAEGSRIRSGEVSHTGVIPFWKHFTTGVKSCSQG 292

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R G+       WH++VE+ L L+ N G +  R  +++    I   F++R+ ++   TL
Sbjct: 293 GVRGGSGNINYPMWHLEVEKLLVLKNNKGTEETRIRNIDYTVHINKFFIERLKEDGYITL 352

Query: 502 FSPDEVSDL--HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           FSPD  + L   D Y  +     E Y++      I+  ++I A  L+  MLT    TG  
Sbjct: 353 FSPDIDNGLLYKDFYDSDSSKFIERYKKLEMNHVIRK-KRIKAADLFTTMLTERAGTGRI 411

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETAVCNLGSINLLAHFAN 613
           +  F D  N      ++  +  +NLC EI       +    EE A+C L +INL      
Sbjct: 412 YAMFVDNVNK--QTPYIEPIKMTNLCVEIKSSRHNPMADKDEEIALCTLSAINLGKIKTT 469

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           + +         R  VR LDN++D   + ++ A+K     R++G+G++     L    + 
Sbjct: 470 SDYI-----RLSRIIVRALDNLLDYQDYPVKAAEK-AKKRRSLGIGVVNLAYFLAKNFVN 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y SPEA+ +  E  E I F  I AS+ELA+ERGA      + W +G+ PID         
Sbjct: 524 YNSPEALALVHEHFEAIQFSHIRASMELAKERGASEWHDRTKWSKGLLPIDWYNKNV--- 580

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +L      +  W+ L+  +   G+RN    A  P+ + + +   +  ++P    L  K+
Sbjct: 581 -DLLTPNVLKQDWEWLRTEILKYGLRNDTLTAQMPSESSSQLLNATNGVEPVRALLSTKA 639

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  +   +                            + + D+ + + A   E   
Sbjct: 640 SKDGAFNQLVPDV----------------------------DILSDEYQTLWAMVRENGM 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSR 906
              +   +  QK+ DQ  S+N      S K        +      A   GLK  YY  +R
Sbjct: 672 TGYLSICAVIQKFFDQGISVNTSYIPQSYKSGKVPVSVMLKDLVFAQKYGLKAMYYHNTR 731

Query: 907 SATSVEKSTLKGVD 920
                +   +K  D
Sbjct: 732 DGNESDIEMVKEAD 745


>gi|237743585|ref|ZP_04574066.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
 gi|229432616|gb|EEO42828.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
          Length = 755

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/811 (28%), Positives = 377/811 (46%), Gaps = 92/811 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   AMERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ ++   +E +++ V  R L+ +  REV  +                + +   + 
Sbjct: 61  SLINTAVSMTTFEESDWSYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            E G+    L     + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 TELGLYDERLLSY-TEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKYDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITEM 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++ 
Sbjct: 351 ESWTLLDPYEIRKKYGVELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             AW  G K+ YY+R+    +   S  +  +
Sbjct: 721 MTAWEEGCKSIYYIRTIQKNTNNISDKEECE 751


>gi|161622627|ref|YP_001595353.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
 gi|160331905|gb|AAU29205.2| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
          Length = 751

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 192/795 (24%), Positives = 325/795 (40%), Gaps = 70/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    + EG
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPRS-----------FIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERDF   Y G   L ++Y +     G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E        + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y ++ E   E YE  A++      ++I A  L+   +T    T   
Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEA-AEKDSSIRKKRIKARDLFELFMTERSGTARI 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 408 YPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YED--ANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G+F  V   + +    + L+D A     K      GN   +                
Sbjct: 638 SKEGNFRQVVPNVEH---NQGLYDYAWSLAKK------GNKPYLT--------------- 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSR 906
                  +   KW+ Q+ S N Y D  + +K       +       W  G K  YY  +R
Sbjct: 674 -----QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTR 728

Query: 907 SATSVEKSTLKGVDG 921
             +  +   ++    
Sbjct: 729 DGSGTDDYEIETPKA 743


>gi|66391515|ref|YP_239040.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
 gi|62288603|gb|AAX78586.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
          Length = 751

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/802 (25%), Positives = 336/802 (41%), Gaps = 75/802 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++    ++   G    F  ++L  ++  A  G +++     L      + DG++   ++ 
Sbjct: 1   MSEIKTVIKSSGVSQPFEKEKLFKVLNWASVG-KNIDVNAFLESVVDLLRDGMTTKQIQG 59

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             I  +   I  KEP++  V A   +  LR+ V       P           + E+  + 
Sbjct: 60  VAIKYAADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKL 108

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + +       D+ Y   ++K+++DF F Y G+Q L  +Y L    NG   E P
Sbjct: 109 VDAGKYDKEILTKWTKADIEYFEENIKHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETP 168

Query: 318 QAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           Q  FM +AM L   E          V+FYN +S       TP +    T   Q SSC + 
Sbjct: 169 QYAFMLIAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVI 228

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  +               G+G +   +R +G+ I G      GVIPF K     
Sbjct: 229 ESGDSLGSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTA 288

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+ 
Sbjct: 289 VKSCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVENNRIRHLDYGVQLNDLMYKRLI 348

Query: 495 QNAGWTLFSPDEVSD-LHDLYGK----EFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            N   TLFSPD  +D L+D + +    EFE  Y + E+     +    ++I A  L++ +
Sbjct: 349 NNDYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPTVRK----KRIKAADLFQLL 404

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---EETAVCNLGSIN 606
           +    +TG  +I      N +        V  SNLC EI + +S    ++     +G   
Sbjct: 405 VQERAQTGRKYIFNSHHVNQQGSFSV--PVRMSNLCCEIAIPTSPLDDDDKLAGEIGLCT 462

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L+A   +N  D  +  +  R AVR LDN++D   + +  A K+    R++G+G+  + S 
Sbjct: 463 LMAIVLDNA-DVSEFPALTRIAVRALDNLLDYQNYPVAAALKAKQR-RSLGVGITNYASW 520

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L   +  Y+   A     E ME   ++ + AS+ELA+ERGA   F  + + QG+ PID  
Sbjct: 521 LASNYCDYSEAYAGN-VHELMEAFQYNLLVASMELAKERGACGLFHETKYAQGLLPIDWY 579

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +  DELA+   +   W+ L+  +K  G+RNS   A+ P  + + +   +  I+P  
Sbjct: 580 ---CKTVDELALPVYN-CDWEWLRGEIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPR 635

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VKS+  G F  V     N+  Q D +D       + + G + +             
Sbjct: 636 GPVSVKSSKEGSFNQVVP---NQNDQIDFYDYLWTMAKRGNKGYLSH------------- 679

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-------KKLDFIYRQAWLMGLKT 899
                         +  QK++DQA S N   D  +        + +      A   G+KT
Sbjct: 680 -------------VAVMQKFVDQAISANTNYDPANFPDGKVKSETIIDDLLYANYYGVKT 726

Query: 900 TYYLRSRSATSVEKSTLKGVDG 921
            YY  +R     +++      G
Sbjct: 727 LYYHNTRDGAGEDEAEADDCVG 748


>gi|331035508|gb|AEC53065.1| ribonucleotide-diphosphate reductase subunit A [Synechococcus phage
           S-CRM01]
          Length = 770

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/833 (24%), Positives = 349/833 (41%), Gaps = 95/833 (11%)

Query: 144 KLKIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++ +   +G      +  ++  +VE AC GL  VS   +  ++    YDG++  D++  L
Sbjct: 8   EIYVKKRNGRGTEPLDLDKIHTMVEAACDGLSRVSPSQIEIQSQLQFYDGITTEDIQATL 67

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  E PNY    AR LL  LR+    ++Y K   +   + Q  Y       I+
Sbjct: 68  IRSAADLISLENPNYQYAAARLLLFSLRK----SIYHKMWDSWSLQDQIAYG------ID 117

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
             V    +     D +   L N + ++RDF F Y  ++ +YD+Y +     G   E PQ 
Sbjct: 118 NNVYDPAILTYYTDEEFEILNNYIDHDRDFLFTYAAMRQVYDKYLVQDRSTGKVYETPQF 177

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M  A     K  +  +      +Y+ +S  +    TP +    T+  Q +SC L    
Sbjct: 178 CYMLNAATTFHKYPKATRLNYVKAYYDAISKHYLNLPTPNIAGVRTKTRQYASCVLIETD 237

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL  IF +     +      G+G +   +R LG  +        GVIP+LK     A  
Sbjct: 238 DDLRSIFTSATAVGLYTSQRAGIGLNPGRIRALGDKVRNGEISHTGVIPYLKHFETAAKC 297

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
             Q G R G   A+   WH ++++ L L+ N G +  R   ++ +  +  LF +R   ++
Sbjct: 298 TTQNGLRGGGATAHFPIWHKEIQDILVLKNNKGTEDNRVRKLDYSIQLSSLFYQRFIDDS 357

Query: 498 GWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             TLFSP++V  L+D +  +EF+  Y  YE  +D  ++    +I A  L+ +++    ET
Sbjct: 358 YITLFSPNDVPGLYDAFATEEFDELYREYEANSDIPQV----RIPARQLFMELIKERAET 413

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLL 608
           G  +I   D CN  S    +  V  SNLC EITL +           E A+C L +IN+ 
Sbjct: 414 GRIYIMNMDHCNTHSSF--LVSVFMSNLCQEITLPTRPLFDIHDIYGEIALCILAAINVG 471

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                       +      AVR LD +ID   + +  A+ S  + R++G+G +G    L 
Sbjct: 472 KIR-----HLHDMQHLCDLAVRALDELIDYQEYPLVAAEISTKSRRSLGVGFIGVAQYLA 526

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y   +A+    E  E + ++ + AS  LA+E+GA S F  + +  G+ PID    
Sbjct: 527 KKKVKYGDKQALVYMHELTEALQYYLLEASNNLAKEKGACSKFNETKYSDGLLPIDHYKK 586

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +       +L W+ L++++K  G+RNS   A  P+ + + +C  +  I+P    
Sbjct: 587 DV----DGICPPNYKLDWEVLREKIKVFGLRNSTLSAQMPSESSSVVCNTTNGIEPPRDY 642

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L VK +  G    +                           S G        LK  +   
Sbjct: 643 LSVKKSKKGTLKQIVP-------------------------SYGT-------LKNDYTLL 670

Query: 849 FEI-DPMWLIESASRRQKWIDQAQSLNL---YLDEPSGKKLDFIYR----QAWLMGLKTT 900
           +++      +   +  QK++DQ+ S N      + P+ +    I      QA+ +G+KT 
Sbjct: 671 WDMESMEGYLNIVAVMQKFMDQSISANTSYNPKNYPNNEVPASILIMDLLQAYKLGIKTL 730

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YY  +  +   E++ ++                      + +    D  C+ C
Sbjct: 731 YYHNTYDSKGEEETLVEN---------------KVLDEDVLALLECDETCDSC 768


>gi|296329017|ref|ZP_06871524.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153910|gb|EFG94721.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 755

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/810 (28%), Positives = 378/810 (46%), Gaps = 92/810 (11%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ +
Sbjct: 3   MERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQAS 61

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++ T+   +E ++A V  R L+ +  REV  +                + +   +  
Sbjct: 62  LINTAVTMTTFEESDWAYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKMT 112

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E  +    L     + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  
Sbjct: 113 ELELYDERLLSY-TEEELHQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N       LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++  
Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG P+I FKD  N  +   H+G++ + NLC E   N                     
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKHVALAVRALDNTIDLTVTPLKESNKHNLLY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQG+F         + R+   +N   +  W+E+   V+T G+RN    AIAP  + +
Sbjct: 581 SKWDQGIF-------YGKKREWYDINSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G         V  LK R                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR-------------------- 669

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---R 890
                      +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY    
Sbjct: 670 --------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            AW  G K+ YY+R+    +   S  +  +
Sbjct: 722 TAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|257462864|ref|ZP_05627270.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D12]
 gi|317060490|ref|ZP_07924975.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
 gi|313686166|gb|EFS23001.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
          Length = 752

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/809 (27%), Positives = 369/809 (45%), Gaps = 95/809 (11%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            K K++  DG +   + +++   +  AC+GL+ V+   + S+      + ++   ++ +L
Sbjct: 4   EKRKVINRDGIVEELDIEKIREKLLRACAGLE-VNMVELESKIESIYEENITTKKIQESL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCLYPEYFCR 258
           I S+ ++   +E ++A+V  R L+ +  REV       Y   +K     +   Y  Y  R
Sbjct: 63  INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGNLEKTIS--LMLSYGLYDTR 120

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
                           + ++  L   +  ERD  ++Y G  +   RY L  NG   E+PQ
Sbjct: 121 L-----------SIYTEQEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYNGKTHELPQ 169

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             FM +AM L++ E ++ K A E Y  LS      +TP L N       LSSCF+T + D
Sbjct: 170 EVFMIIAMLLSIHEQDRVKVAKEIYEGLSLQKISLATPILANLRIPKGNLSSCFITAIDD 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 230 NIESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAV 289

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV     
Sbjct: 290 NQQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGED 349

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+  L+     +LYG +FE  YE         +I++ +K+ A  L++ M+   
Sbjct: 350 WTLVDPYEIRKLYGVELCELYGAKFEEVYER---VEREEKIQLKKKMKARDLFKAMMKSQ 406

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595
            ETG P+I FKD  N R+   H G++ + NLC E   N S                    
Sbjct: 407 LETGMPYIFFKDRANERNHNSHEGMIGNGNLCMESFSNFSPSKNFQEEVLGNQAIRRKEM 466

Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL S+NL       +   ++L      AVR LDN ID+    + ++ K N  +R
Sbjct: 467 GEIHTCNLLSLNLA------EITEEELEKYTGLAVRALDNTIDLTVTPLAESNKHNEKYR 520

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G MG    L   ++ Y   E  E   +  E I+ +A+ AS  LA++RG Y +F GS
Sbjct: 521 TVGVGAMGLADYLAREYMIYEDSE--EEISQLFEKIAAYALKASAFLAKDRGQYPAFSGS 578

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W QG+F   +     +      +       W E+   V   G+RN    AIAP  + + 
Sbjct: 579 KWSQGIFFGKTQEWYEKHSKYAEL-------WKEVFYLVDQYGLRNGELTAIAPNTSTSL 631

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + SI P++   +++ N SG    V  +L                            
Sbjct: 632 LMGATASIVPTFSRFFIEKNQSGATPRVVKYL---------------------------- 663

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQ 891
                D    +     +DP   ++  S+  +W  Q  S+ L  D     +   IY     
Sbjct: 664 ----KDRAWFYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLVT 719

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           AW  G K+ YY+R+    +   +  +  +
Sbjct: 720 AWETGCKSVYYVRTIQKNTNIINEKEECE 748


>gi|257453170|ref|ZP_05618469.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           3_1_5R]
 gi|257467365|ref|ZP_05631676.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918495|ref|ZP_07914735.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059705|ref|ZP_07924190.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313685381|gb|EFS22216.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313692370|gb|EFS29205.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 752

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/809 (27%), Positives = 376/809 (46%), Gaps = 95/809 (11%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            + K++  DG +   N +++   +  AC+GL+ V+   + S+      + ++   ++ +L
Sbjct: 4   ERRKVINRDGIIEDLNIEKIREKLVRACAGLE-VNMVELESKIESIYEENITTKKIQESL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVL---TTVYKKPQKATHHEMQCLYPEYFCR 258
           I S+ ++   +E ++A+V  R L+ +  REV       Y + +K     +   Y  Y  R
Sbjct: 63  INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGELEKTIS--LMLSYGLYDAR 120

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +               ++  L   +  ERD  ++Y G  +   RY L  +G   E+PQ
Sbjct: 121 LSK-----------YTKEEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYSGKIHELPQ 169

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             FM +AM L++ E +K K A E Y  LS      +TP L N    +  LSSCF+T + D
Sbjct: 170 EVFMIIAMLLSIYEKDKVKVAKEIYEGLSLRKISLATPILANLRIPNGNLSSCFITAIDD 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 230 NIESIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAV 289

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV   A 
Sbjct: 290 NQQGRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGAD 349

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+      +L +LYG EFE  YE  ER+    +I++ + + A  L+++++   
Sbjct: 350 WTLVDPYEIRQIYGVELCELYGVEFEEVYERIERE---NKIQLKKIMKARDLFKEIMKSQ 406

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595
            ETG P+I FKD  N R+   H+G++ + NLC E   N S                    
Sbjct: 407 LETGMPYIFFKDRANERNHNSHLGMIGNGNLCMESFSNFSPSKNFQEKIVGNVAIHEKEM 466

Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL S+NL           ++L      AVR LDN ID+    + ++ K N  +R
Sbjct: 467 GEVHTCNLLSLNLAEIME------EELEKYTSLAVRALDNTIDLTVTPLAESNKHNEKYR 520

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++     E+ E   +  E I+ +A+ AS  LA++RG Y +F GS
Sbjct: 521 TIGVGAMGLADYLAREYM--IYEESEEEISQVFERIAAYALKASAFLARDRGQYPAFVGS 578

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W QG+F         + +D    +      W E+   V   G+RN    AIAP  + + 
Sbjct: 579 KWSQGIFFG-------KTQDWYEKHSKYSDVWKEVFYLVDQYGLRNGELTAIAPNTSTSL 631

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N SG    V  +L                            
Sbjct: 632 LMGATASVVPTFSRFFIEKNQSGATPRVVKYL---------------------------- 663

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQ 891
                D    +     +DP   ++  S+  +W  Q  S+ L  D     +   IY     
Sbjct: 664 ----KDRAWFYPEFKNVDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLLT 719

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           AW  G K+ YY+R+    +   +  +  +
Sbjct: 720 AWETGCKSVYYVRTIQKNTNIMNEKEECE 748


>gi|167043944|gb|ABZ08631.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG3J11]
          Length = 890

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/894 (23%), Positives = 364/894 (40%), Gaps = 134/894 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI KAF A        +I        L++  + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYKAFSASNKPDKGLAI-------KLSDGVLVKLTEHGFS 71

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +   +    K  
Sbjct: 72  ANNPPSVEAIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKVLNTKKLDSVGKSF 131

Query: 149 MDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             +   +             I+E+     + V+  + +S+  ++ Y    +  +   +  
Sbjct: 132 DINCLRVLASRYLFRDNKNEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGMSQNIEE 191

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L                    +++    YK            L   +F   I    
Sbjct: 192 AAEYL--------------------KKLDGFSYK-----FKIGSYYLNKWHFRCLIN--C 224

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L  + MM      L              L  +   D Y                 R+
Sbjct: 225 YVELAKQGMMKVSFKEL-----------LTMLASKKF-DAYA---------------DRI 257

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +               E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI 
Sbjct: 258 S---------------EYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIM 302

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
               + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR
Sbjct: 303 KTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKR 362

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GA    +E WH D+E+F+  +   G       + N +  +   F   +    +  +TL 
Sbjct: 363 RGANMGIMEVWHPDIEKFITNKTEPGV----LENFNVSVGVWKDFWDVLVNSGDGKYTLR 418

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP + S   +                           I+A  L   +    +++  P + 
Sbjct: 419 SPKDNSSAGE---------------------------INAHHLIDLIAQSAWKSAEPGLI 451

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYE 507

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E
Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKNRGEFPLCSKTEYPEGKIPV--SGYYEKPKEE 625

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 626 QY------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 739

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + + +  Q WI  A +  + +    S + +   Y  A  MGLK     R  S 
Sbjct: 740 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSR 793


>gi|299779175|ref|YP_003734369.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
 gi|298105904|gb|ADI55548.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
          Length = 755

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 195/805 (24%), Positives = 329/805 (40%), Gaps = 72/805 (8%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +++    G    F+++++  ++   C G Q +    +  E   ++ DG++  D++ 
Sbjct: 1   MEEIMQVQKSSGVSQDFDAQKIIKVLTWGCEGTQ-IDPYELYEEIKSHLRDGMTTKDIQN 59

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             +  +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    
Sbjct: 60  LTVKVAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPRS-----------FIDHISYC 108

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMP 317
           + EG     L       ++ +L + +K+ERDF   Y G   L ++Y +     G   E P
Sbjct: 109 VNEGKYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETP 168

Query: 318 QAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           Q   M + M L  +E        + FY+ +S+      TP +  + T   Q SSC +   
Sbjct: 169 QFAIMCIGMALHQEEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEA 228

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R  G+ I     K  GVIPF K       
Sbjct: 229 GDSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVK 288

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N
Sbjct: 289 SCSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKN 348

Query: 497 AGWTLFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              TLFSP E+S +L+  Y ++ +   E YE       I+  ++I A  L+   +T    
Sbjct: 349 DYITLFSPHEMSGELYHSYFEDQDRFRELYEAAEKDPSIRK-KRIKARDLFELFMTERSG 407

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLA 609
           T   +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L  
Sbjct: 408 TARIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDN 467

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
               +  D DK+       VR LDN++D   + + +A K     R +G+G+  + + L  
Sbjct: 468 F---DWQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLAS 523

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID     
Sbjct: 524 NFASYED--ANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN-- 579

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +  D++A        W  L++ +   G+RNS   A+ P  + + +   +  I+P    +
Sbjct: 580 -KKIDQIAAPNYV-CDWTSLREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 637

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K +  G+F  V   + +    + L+D A     K      GN   +   +        
Sbjct: 638 SIKESKEGNFRQVVPNVEH---NQGLYDYAWTLAKK------GNKPYLTQVV-------- 680

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTY 901
                          KW+ Q+ S N Y D         P    LD +    W  G K  Y
Sbjct: 681 ------------IMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDL-LYFWYYGGKNLY 727

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAV 926
           Y  +R  +  +   ++       A 
Sbjct: 728 YHNTRDGSGTDDYEIETPKADDCAA 752


>gi|116326447|ref|YP_803167.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
 gi|115344040|gb|ABI95049.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
          Length = 754

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 328/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|113951988|gb|ABI48928.1| NrdA [Enterobacteria phage T2H]
          Length = 754

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 328/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|19703450|ref|NP_603012.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713528|gb|AAL94311.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 755

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/810 (28%), Positives = 378/810 (46%), Gaps = 92/810 (11%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ +
Sbjct: 3   MERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQAS 61

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++ T+   +E ++A V  R L+ +  REV  +                + +   +  
Sbjct: 62  LINTAVTMTTFEESDWAYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKMT 112

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E  +    L     + +L  +A  +   RD  ++Y G  +L +RY +  +G   E+PQ  
Sbjct: 113 ELELYDERLLSY-TEEELHQIAQLIDINRDMVYDYAGANMLVNRYLIKYDGKTYELPQET 171

Query: 321 FMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           FM ++M LAL E E E R     EFYN LS      +TP L N       LSSCF+T + 
Sbjct: 172 FMAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAID 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVA
Sbjct: 232 DNIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVA 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N 
Sbjct: 292 VNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNE 351

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P E+      +L +LYG EFE  YE  E   +     + + +SA  L++ ++  
Sbjct: 352 TWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDPNIK---LKKVLSAKELFKSIMKT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG P+I FKD  N  +   H+G++ + NLC E   N                     
Sbjct: 409 QLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSE 468

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E   CNL SINL       +   ++L   +  AVR LDN ID+    ++++ K N  +
Sbjct: 469 MGEIHTCNLISINLA------ELTSEELEKYVALAVRALDNTIDLTVTPLKESNKHNLLY 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKG
Sbjct: 523 RTIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASTLLAKDRGAYKAFKG 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WDQG+F         + R+    N   +  W+E+   V+T G+RN    AIAP  + +
Sbjct: 581 SKWDQGIF-------YGKKREWYDTNSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTS 633

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G + S+ P++   +++ N  G         V  LK R                    
Sbjct: 634 LLMGSTASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR-------------------- 669

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---R 890
                      +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY    
Sbjct: 670 --------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            AW  G K+ YY+R+    +   S  +  +
Sbjct: 722 TAWEEGCKSVYYIRTIQKNTNNISDKEECE 751


>gi|113951999|gb|ABI48936.1| NrdA [Enterobacteria phage T6]
          Length = 754

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 195/801 (24%), Positives = 328/801 (40%), Gaps = 72/801 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGKLNAV 926
           R  +  +   ++       A 
Sbjct: 731 RDGSGTDDYEIETPKADDCAA 751


>gi|304373618|ref|YP_003858363.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
 gi|299829574|gb|ADJ55367.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
          Length = 750

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 204/790 (25%), Positives = 333/790 (42%), Gaps = 75/790 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G   +F  ++L  ++  A +G +++     L      + DG++   ++   I  +
Sbjct: 7   VVKSSGVSQTFEKEKLFKVLNWASAG-KNIDVNAFLENVVDLLRDGMTTKQIQAVAIKYA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I  KEP++  V A   +  LR+ V       P           + E+  + +E G  
Sbjct: 66  ADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVEAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMR 323
            + +       D+ Y   ++ +++DF F Y G+Q L  +Y L    NG   E PQ  FM 
Sbjct: 115 DKEILTKWTKSDIEYFEENINHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQYAFML 174

Query: 324 VAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +AM L   E          V+FYN +S       TP +    T   Q SSC +    D L
Sbjct: 175 IAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIESGDSL 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +               G+G +   +R +G+ I G      GVIPF K       + +Q
Sbjct: 235 GSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVKSCSQ 294

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+  N   T
Sbjct: 295 GGVRGGAATLYYPIWHLEVENLLVLKNNRGVEENRIRHLDYGVQLNDLMYKRLINNDYIT 354

Query: 501 LFSPDEVSD-LHDLYGK----EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LFSPD  +D L+D + +    EFE  Y + E+     +    ++I AV L++ ++    +
Sbjct: 355 LFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPAVRK----KRIKAVDLFQLLVQERAQ 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---EETAVCNLGSINLLAHFA 612
           TG  +I      N +        +  SNLC EI + +S    ++     +G   L+A   
Sbjct: 411 TGRKYIFNSHHVNQQGSFSV--PIRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLMAIVL 468

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +N  D  +  +  R AVR LDN++D   + +  A K+    R++G+G+  + S L   + 
Sbjct: 469 DNA-DISEFPALTRIAVRALDNLLDYQNYPVAAALKAKQR-RSLGVGITNYASWLASNYC 526

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A     E ME   F+ + AS+ELAQERGA   F  + + QG+ PID      + 
Sbjct: 527 DYSEAYAGN-VHELMEAFQFNLLVASMELAQERGACGLFHETKYAQGLLPIDWY---CKN 582

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            DELA +      W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    + VK
Sbjct: 583 VDELA-SPVYNCDWEWLRGEIKKHGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G F  V     N+  Q D +D       + + G + +                   
Sbjct: 642 SSKEGSFNQVVP---NQNNQIDFYDYLWTMAKRGNKGYLAH------------------- 679

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRS 905
                   +  QK++DQA S N   D  +          +      A   G+KT YY  +
Sbjct: 680 -------VAVMQKFVDQAISANTNYDPANFPDGKVKSEIILEDLLYANYFGIKTLYYHNT 732

Query: 906 RSATSVEKST 915
           R     E++ 
Sbjct: 733 RDGAGEEEAE 742


>gi|291290451|dbj|BAI83246.1| ribonucleotide reductase A subunit [Enterobacteria phage AR1]
          Length = 754

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 327/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENVKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|237738279|ref|ZP_04568760.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420159|gb|EEO35206.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
          Length = 748

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 218/802 (27%), Positives = 369/802 (46%), Gaps = 89/802 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G     + K++   + +AC  L+ V+   + S       +G++   ++  LI  +
Sbjct: 4   VVNRAGIKEELDIKKIREKLIKACDNLE-VNMIELESHIDAIYQEGITTKKIQETLITQA 62

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             ++  +E ++  V  R L+ +  REV         K                 +++ + 
Sbjct: 63  VAMVSFEESDWTYVAGRLLMMETEREVFHKRGFSYGKFLQ---------TVRELVDKKIY 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              L     D ++  L   +  +RD  ++Y G  +L +RY +   G+  E+PQ  FM +A
Sbjct: 114 DSRL-GDYSDKEIEELGKYIAPDRDMMYDYAGANMLVNRYLIKYLGNTYELPQEVFMCIA 172

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E  + + A +FY+ LS      +TP L N       LSSCF+T + D++  IF 
Sbjct: 173 MLLAINEKNRVEIAKKFYDALSLKKISLATPILANLRIPKGNLSSCFITAIDDNIESIFY 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            +   A ++K  GG+G + + +R   + ++G    S GV+P++++ NDTAVAVNQ G+R 
Sbjct: 233 NIDTIAKISKNGGGVGVNISRIRAKNSMVNGYYNASGGVVPWIRIINDTAVAVNQQGRRA 292

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAV   L+TWH+D+E+FL+L+   GD R + +D+     + D+FMKRV ++  WTL  P 
Sbjct: 293 GAVTVALDTWHLDIEKFLELQTENGDQRTKAYDIYPQVVVSDIFMKRVEKDEMWTLVDPY 352

Query: 506 EVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           E+      +L +LYG EFE  Y   E       + + ++I A  L+++++ +  ETG P+
Sbjct: 353 EIRMKYNLELCELYGVEFEKIYLQIENDET---LTLKKRIRARELFKEIMKVQIETGMPY 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------TAVCN 601
           I FKD  N  +   H+G++ + NLC E   N +  +                      CN
Sbjct: 410 IFFKDRANRMNHNNHIGMIGNGNLCMESFSNFAPSKNYTEEENNGSGVRKVDLGMVHTCN 469

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L S+NL       + + D+L      AVR+LDN ID+    I ++ + N  +R IG+G M
Sbjct: 470 LVSMNLA------EIERDELEDITGIAVRILDNTIDLTETPILESDRHNSNYRTIGVGTM 523

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    +    + Y   E+++  D   E I+ + + AS  LA+ERGAY  FK S+WD+GVF
Sbjct: 524 GLADFMAKEFMIYE--ESLDEIDRLYEEIALYTVKASALLAKERGAYPYFKNSMWDRGVF 581

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    + R     N      W+E+   VK  G+RN    A+AP  + + + G + S
Sbjct: 582 F-------QKDRVWYEENSQFADKWNEVFNLVKEYGLRNGELSAVAPNTSTSLLMGATAS 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           ++P++   +++ N  G    V  +L                                 D 
Sbjct: 635 VNPTFSRFFIEKNQKGAVPRVVKYL--------------------------------KDR 662

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---GKKLDFIYRQAWLMGLK 898
              +     +D    ++  SR  KWI Q  S+ L  D       K +   +  AW  G K
Sbjct: 663 AWFYPEFKNVDAQTYVKMMSRIGKWITQGVSMELLFDLNKNIRAKDIYDTFLTAWKEGCK 722

Query: 899 TTYYLRSRSATSVEKSTLKGVD 920
           + YY+R+    +      +  +
Sbjct: 723 SVYYIRTIQKNTNIAKDKEECE 744


>gi|253582917|ref|ZP_04860135.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
 gi|251835123|gb|EES63666.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
          Length = 748

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/806 (28%), Positives = 374/806 (46%), Gaps = 95/806 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +++   G   + +  ++   +  AC GL+ V+   + S       + ++   ++ +LI  
Sbjct: 3   EVINRAGIKENLDIIKIREKLIRACEGLE-VNMVELESYIDSIYQENITTKKIQESLINQ 61

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---YIE 261
           +  +   +E ++  V  R L+ +  REV             H+    Y E++       E
Sbjct: 62  AVAMTSFEESDWTYVAGRLLMMETEREVF------------HKRGFSYGEFYKTIKTLTE 109

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G+    L E   D ++  L   +   RD  ++Y G  +  +RY L   G+  E+PQ  F
Sbjct: 110 NGIYDNRLQEYTED-EIKELEKAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVF 168

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA+ E  +   A  FYN LS      +TP L N       LSSCF+T + D++ 
Sbjct: 169 MCIAMLLAINEENRVLVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R   + ++G    S GV+P++K+ NDTAVAVNQ 
Sbjct: 229 SIFYNIDTIAKISKSGGGVGLNVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQ 288

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   L++WH+D+E FL+L+   GD R + +D+     + DLFMKRV  N  WTL
Sbjct: 289 GRRAGAVTVALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTL 348

Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV      +L +LYG++FE  Y+  E+      +K+ + I A  L+++++ +  ET
Sbjct: 349 VDPYEVRIKYGVELCELYGEKFEEIYKALEKDTS---LKLKKVIKARELFKEIMKVQIET 405

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ET 597
           G P+I FKD  N+ +   H G++ + NLC E   N                       E 
Sbjct: 406 GMPYIFFKDRANLMNHNNHKGMIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEV 465

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNL S+NL       +   ++L + + TAVR+LDN ID+    I ++ K N  +R IG
Sbjct: 466 HTCNLVSLNLA------EIAREELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIG 519

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G MG    L    + Y   E++   DE  E I+ ++I +S  LA+ RG Y  FKGS+WD
Sbjct: 520 VGTMGLADYLAREFMIYD--ESLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWD 577

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +GVF         + +D    N      W+E+ + V   GMRN    AIAP  + + + G
Sbjct: 578 RGVFF-------QKNKDWYIKNSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMG 630

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + S++P++   Y++ N  G    V  +L                               
Sbjct: 631 ATASVNPTFSRFYIEKNQKGAVPRVVKYL------------------------------- 659

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY---RQAWL 894
             D    +     ++P   +E  SR  KW  Q  S+ L  D     +   IY     AW 
Sbjct: 660 -KDRAWFYPEFKNVNPQIYVEIMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWK 718

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVD 920
            G K+ YY+R+    +   +  +  +
Sbjct: 719 NGCKSIYYIRTIQKNTNIMNEKEECE 744


>gi|167042931|gb|ABZ07646.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_ANIW137N13]
          Length = 885

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 206/894 (23%), Positives = 365/894 (40%), Gaps = 134/894 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +   +    K  
Sbjct: 67  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKVLNTKRLDSVGKSF 126

Query: 149 MDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             +   +             I+E+     + V+  + +S+  ++ Y    +  +   +  
Sbjct: 127 DINCLRVLASRYLFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGMSQNIEE 186

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L                    +++    YK            L   +F   I    
Sbjct: 187 AAEYL--------------------KKLDGFSYK-----FKIGSYYLNKWHFRCLIN--C 219

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L  + MM      L              L  +   D Y                 R+
Sbjct: 220 YVELAKQGMMKVSFKEL-----------LTMLASKKF-DAYA---------------DRI 252

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +               E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI 
Sbjct: 253 S---------------EYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIM 297

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
               + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR
Sbjct: 298 KTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKR 357

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLF 502
           +GA    +E WH D+E+F+  +   G       + N +  +   F   +   ++  +TL 
Sbjct: 358 RGANMGIMEVWHPDIEKFITNKTEPGV----LENFNVSVGVWKDFWDVLVNSEDGKYTLR 413

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP + S   +                           I+A  L   +    +++  P + 
Sbjct: 414 SPKDNSSAGE---------------------------INAHHLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--SGYYEKPKEE 620

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 621 QY------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + + +  Q WI  A +  + +    S + +   Y  A  MGLK     R  S 
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSR 788


>gi|167461831|ref|ZP_02326920.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383592|ref|ZP_08057350.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152060|gb|EFX44996.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 761

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/754 (32%), Positives = 359/754 (47%), Gaps = 87/754 (11%)

Query: 198 LETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +  +L  ++   I K EP +    A   L++L                       Y  ++
Sbjct: 58  VYRSLKTAAVECITKDEPEWTFPAAAAYLQELYYIAAQNRSYSLTFRNGVIEGSPYGSFY 117

Query: 257 ---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
                  E+G+    L +S    ++  L   ++ E+D  F Y+GL  L +RY      G 
Sbjct: 118 ELISMLCEKGIYKAELIDSYSREEIEDLGRAIQPEKDKLFPYVGLITLAERYLATGFAGE 177

Query: 313 RIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLS 369
             E+PQ  FM +AM L ++E    + K   E Y  LS+ +   +TPTL N+G     QLS
Sbjct: 178 FYELPQERFMIIAMQLMIQEKRSTRLKWVKEAYWALSNQYMTVATPTLSNAGKARAGQLS 237

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF+ TV D L GI+ +  + A L+K  GG+G     VR  G+ I G  GKS GV+P+++
Sbjct: 238 SCFIDTVDDSLQGIYDSNTDIARLSKMGGGIGVYMGKVRSRGSDIRGYKGKSSGVLPWIR 297

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             N+TAV+V+Q G RKG++  YL+ WH D+  FLDL+ N GD+R R HD+     IPDLF
Sbjct: 298 QLNNTAVSVDQLGTRKGSIAVYLDVWHKDILSFLDLKLNNGDERLRAHDIFPGVCIPDLF 357

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           M+ V Q   + LF P EV       L DLY ++         YE   +  ++     + A
Sbjct: 358 MEAVEQRGEFHLFDPHEVRQVMGYSLEDLYDEKVGEGSFRTKYEECVNNPQLS-RTTVQA 416

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
           + + +++L    ETG P++ ++D  N  +P +H G+++SSNLCTEI  N S         
Sbjct: 417 IDIMKRILISQLETGTPYMFYRDTVNRANPNKHKGMIYSSNLCTEIMQNMSATTLIEEEL 476

Query: 594 ----------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                     + +  VCNL SI+L     +       L   I   +R+LDNVIDIN   +
Sbjct: 477 NDGEIVIRKQAGDFVVCNLSSIHLARAVPDGV-----LERLIPVQIRMLDNVIDINRIEV 531

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A  +N  +RAIGLG  G    L L  I + S EAV   +   E ISF AI AS+ELA+
Sbjct: 532 PQATYTNKRYRAIGLGTFGLHHLLALKKIQWESEEAVVYNEALYERISFLAIQASMELAR 591

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GAY  F+GS W+ G +                +       W +L+++ K  GMRN   
Sbjct: 592 EKGAYPLFEGSGWETGEY--------------FELKGYKSEEWKKLQQQTKENGMRNGYL 637

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MA+AP  + + I G + SIDP Y  +  +   +            +L  + +W       
Sbjct: 638 MAVAPNGSTSIIAGSTASIDPIYDLISYEEKTTYKIANPAP----DLSPQTIW------- 686

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + TAF ID  W I  AS RQ+ IDQ QS NLY   +   
Sbjct: 687 --------------------YYKTAFHIDQHWSIRQASARQRHIDQGQSFNLYVKPDIKA 726

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           K+   ++  AW  GLK +YY+RSR A  VE   +
Sbjct: 727 KQFLELHLDAWRSGLKASYYVRSR-AVEVEDCVV 759


>gi|146304479|ref|YP_001191795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
 gi|145702729|gb|ABP95871.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
          Length = 823

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/846 (25%), Positives = 372/846 (43%), Gaps = 117/846 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++  DG    F  +++   +      + D  +K V+  +  N+ +  S +D+     
Sbjct: 12  KISVIKRDGRREEFKLEKILSKLGPLHDEIVDGIAKDVIQNSTDNVINTRSLADIVE--- 68

Query: 204 FSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
              R LIE   + P    +  +++L ++   V                            
Sbjct: 69  ---RNLIEGSLEHPELMDLAKKYVLARIYNHVFG-------------------------- 99

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQ 318
                         +FD           +D    Y  L++L  RY L    +   IE PQ
Sbjct: 100 ---------KGKWSEFD----------PKDLLISYNALKVLEARYLLKDPETLRYIETPQ 140

Query: 319 AFFMRVAMGLALKETEK---EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             F RVA  LA  E +K   +  A +FY ++SS  F+ +TP L NSGTR   LS+CF+  
Sbjct: 141 MMFKRVASYLAKVEQDKNVQQDAAQKFYEIMSSLKFVPNTPALMNSGTRLGILSACFVLP 200

Query: 376 VPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           V D +      GI+  L+  A++ +  GG G D++ +R  G  +  T G + G + F+K+
Sbjct: 201 VRDSMTSPSGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMKI 260

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +   V QGGKR+GA    +  WH D+E+F+  +     D +   + N +  + D FM
Sbjct: 261 FDVSTDVVKQGGKRRGANMGVMHAWHADIEDFIHAKTGELKDVQ-LQNFNISVGVYDYFM 319

Query: 491 KRVTQNAGWTLFSPD-------------------------------EVSDLHDLYGKEFE 519
           + V +     L +P                                E+ +   +Y  E +
Sbjct: 320 EAVMKEEQVPLITPRKTKIPGTDHEYYIVKARNYMREEWVQEEILRELEEKGSVYLDESK 379

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I   +        E  V R ++A  L+ +++   +++G P + F D  N R P  ++G +
Sbjct: 380 IITVDEALAIAEKEGAVIRWVNARTLFEQIVKGAWDSGDPGLLFIDEINRRHPTWYLGKI 439

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNV 635
            ++N C E  L         CNLGS+NL             D+D LA+TIR AVR LDNV
Sbjct: 440 QATNPCGEEPLLPWES----CNLGSLNLEKFVKERDGTPYIDWDDLANTIRYAVRFLDNV 495

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D N + + + +++    R +GLG+MG   AL  L IPY S +AV ++    +FI +HA+
Sbjct: 496 VDANRYPLPQIEQATKRTRKVGLGVMGLARALIKLGIPYDSVDAVYVSYYLAKFIYYHAM 555

Query: 696 SASVELAQERGAYSSFKGSLWD---------QGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
             S+ELA+E+G++ ++    +            +  I  I        +  M+   +L  
Sbjct: 556 KTSIELAKEKGSFPAYDPVRYKDVWESARELDEILTISGIRGKPSDYAKKLMSEAEKLDV 615

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             LK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G F  ++   
Sbjct: 616 TVLKDMRLKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPLF 675

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +  L++ +L    ++  +    G +G+   +P  ++K+  TA E++PM+ +   +  Q+W
Sbjct: 676 LEYLRKYELDTPDVVKKI-AETGEVGDNPFVPKTIRKLFRTAHEVEPMYHVLHQAAWQQW 734

Query: 867 IDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTL-KGVDGKL 923
            D   S  +    E     ++ +Y  AW +G+K     R +S    V    L K  + K 
Sbjct: 735 NDSGTSKTINLRSEEPADTVEKVYMTAWKLGIKGITVYRDKSKSQQVIYFGLKKEREEKS 794

Query: 924 NAVPVT 929
            A+P +
Sbjct: 795 KALPSS 800



 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  + VIKR+G    F   KI          +   G      V  I K++ + +   ++
Sbjct: 9   SLSKISVIKRDGRREEFKLEKI----------LSKLGPLHDEIVDGIAKDVIQNSTDNVI 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
                A         D VE +L++          + ++YVL
Sbjct: 59  NTRSLA---------DIVERNLIEGSLEHPELMDLAKKYVL 90


>gi|299780592|gb|ADJ39954.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage T4T]
          Length = 754

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/801 (24%), Positives = 327/801 (40%), Gaps = 72/801 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGKLNAV 926
           R  +  +   ++       A 
Sbjct: 731 RDGSGTDDYEIETPKADDCAA 751


>gi|256846216|ref|ZP_05551674.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719775|gb|EEU33330.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 755

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/844 (27%), Positives = 386/844 (45%), Gaps = 123/844 (14%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   VMERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ ++   +E ++A V  R L+ +  REV  +                + +   + 
Sbjct: 61  SLINTAVSMTTFEESDWAYVAGRLLMMEAEREVYHSRG---------FSYGDFSKTIRKM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLSY-TEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M L L E E E R     EFYN LS      +TP L N    H  LSSCF+T +
Sbjct: 171 TFMAISMMLVLNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTL  P E+      +L +LYG EFE  YE  E  ++     + + +SA  L++ ++ 
Sbjct: 351 EAWTLLDPYEIRKKYGIELCELYGYEFENLYEKIENDSNIK---LKKVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEKEDGNTSIRKS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL SINL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISINLA------ELTSDELEKHVALAVRALDNTIDLTVTPLKESNKHNLL 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + 
Sbjct: 580 GSKWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTST 632

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G + S+ P++   +++ N  G         V  LK R                   
Sbjct: 633 SLLMGATASVTPTFSRFFIEKNQRGAI----PRTVKHLKDR------------------- 669

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY--- 889
                       +     ++P+  ++  ++   W+ Q  S+ +  D     K   IY   
Sbjct: 670 ---------AWFYPEFKNVNPISYVKIMAKIGSWVTQGVSMEMVFDLNKDIKAKDIYDTL 720

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             AW    K+ YY+R+     ++K+T                          +S +   E
Sbjct: 721 ITAWEESCKSVYYIRT-----IQKNT--------------------------NSISDKEE 749

Query: 950 CEVC 953
           CE C
Sbjct: 750 CESC 753


>gi|330858747|ref|YP_004415122.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
 gi|327397681|gb|AEA73183.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
          Length = 754

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 327/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGTGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|167044534|gb|ABZ09208.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG6N3]
          Length = 890

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 207/894 (23%), Positives = 365/894 (40%), Gaps = 134/894 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 71

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +   +    K  
Sbjct: 72  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKVLNAKRLDSVGKSF 131

Query: 149 MDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             +   +             I+E+     + V+  + +S+  ++ Y    +  +   +  
Sbjct: 132 DINCLRVLASRYLFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGMSQNVEE 191

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L                    +++    YK            L   +F   I    
Sbjct: 192 AAEYL--------------------KKLDGFSYK-----FKIGSYYLNKWHFRCLIN--C 224

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              L  + MM      L              L  +   D Y                 R+
Sbjct: 225 YVELAKQGMMKVSFKEL-----------LTMLASKKF-DAYA---------------DRI 257

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +               E+Y L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI 
Sbjct: 258 S---------------EYYELMTSQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGGIM 302

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
               + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR
Sbjct: 303 KTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGGKR 362

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GA    +E WH D+E+F+  +   G       + N +  +   F   +    +  +TL 
Sbjct: 363 RGANMGIMEVWHPDIEKFITNKTEPGV----LENFNVSVGVWKDFWDVLVNSGDGKYTLR 418

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP + S   +                           I+A  L   +    +++  P + 
Sbjct: 419 SPKDNSSAGE---------------------------INAHHLIDLIAQSAWKSAEPGLI 451

Query: 563 FKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPYES----CNLGSINLANLVKRMADGQYE 507

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+   G   + ++E
Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPV--SGYYEKPKEE 625

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 626 QY------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWTD 739

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + + S  Q WI  A +  + +    S + +   Y  A  MGLK     R  S 
Sbjct: 740 HLLAQSVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSR 793


>gi|11499254|ref|NP_070492.1| ribonucleotide-diphosphate reductase subunit alpha [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648891|gb|AAB89584.1| ribonucleotide reductase (nrd) [Archaeoglobus fulgidus DSM 4304]
          Length = 752

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 184/617 (29%), Positives = 296/617 (47%), Gaps = 79/617 (12%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFHFMCS 354
           +L  RY L  + G+ IE P+    RVA  +A  E       E+ A +F+ LL    FM +
Sbjct: 10  VLRKRYLLKDDEGNVIETPEEMCWRVARAIAKAEENYGNNAEEWAEKFFKLLWEQKFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  +   G    
Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLNVHHPDIEEFIKAKWEEGV--- 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +    D FM+ + ++  + L +P                              
Sbjct: 187 -LRNFNISVAATDAFMEALKKDDDYDLINPRTGE-------------------------- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V R++ A  ++  ++   +  G P + F D  N  +P  HVG + ++N C E  L    
Sbjct: 220 -VVRRVPARKIFNLIVEGAWRNGEPGMIFIDTINRFNPTPHVGQIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSINL     + + D+D L   +  AVR LD+VID+N + I + ++    +R
Sbjct: 279 S----CNLGSINLAKFVKDGEIDWDGLREVVWIAVRFLDDVIDVNSYPIPEIEQMTKANR 334

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MG+   L LL+IPY S EA+++A++ M+FI   +  AS +LA+ERG + ++KGS
Sbjct: 335 KIGLGVMGWADMLFLLNIPYDSDEAIQLAEKVMKFIQEESHRASQQLAEERGVFPNWKGS 394

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W++                                   K I MRN+    IAPT TI+ 
Sbjct: 395 VWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419

Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           I G S  I+P +   Y ++N+    +F  +N      L++R L+ + +I  +    GSI 
Sbjct: 420 IAGCSSGIEPIFALAYKRTNILDGEEFFEINEIFEEVLRRRGLYTDELIEKV-AEKGSIQ 478

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            IE IP+D++++   A +I P W +   +  QK+ D A S  + +    + K ++  +  
Sbjct: 479 EIEEIPEDIRRVFKCALDISPEWHVRMQAAFQKYTDNAVSKTINMPNSATRKDVEKAFLL 538

Query: 892 AWLMGLKTTYYLRSRSA 908
           A+ +G K     R  S 
Sbjct: 539 AYELGCKGITVYRDGSR 555


>gi|228861160|ref|YP_002854183.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
 gi|227438834|gb|ACP31146.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
          Length = 754

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 327/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPADRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 477

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 181/490 (36%), Positives = 279/490 (56%), Gaps = 18/490 (3%)

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE
Sbjct: 1   KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +Q       V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCT
Sbjct: 61  KQGR-----VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCT 115

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EI   +S +E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +
Sbjct: 116 EIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 175

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+ AS +LA+E 
Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A
Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIA 285

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW+E M + + 
Sbjct: 286 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQII 345

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
             +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL
Sbjct: 346 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 405

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             ++   W  GLKT  YYLR+R A +  + TL K            +     ++  +  S
Sbjct: 406 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCS 465

Query: 944 CTSDTECEVC 953
             +  EC +C
Sbjct: 466 LENREECLMC 475


>gi|294661478|ref|YP_003579931.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
 gi|292660639|gb|ADE34887.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
          Length = 750

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 192/791 (24%), Positives = 334/791 (42%), Gaps = 66/791 (8%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G    F+ +++  +++ AC G  ++  +  L    + + DG++   ++   I  +
Sbjct: 7   VVKSSGVRQPFDKEKIYKVLKWACDG-HNIDVRAFLENVLELIRDGMTTKQIQRIAIKYA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I  KEP++  V +   +  LR++V       P           + ++  + +E G  
Sbjct: 66  ADHISVKEPDWQYVASNLEMFALRKDVYGQFDPIP-----------FYDHIVKMVEAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMR 323
            + + E     D+      + +++DF F Y G Q L  +Y +     G   E PQ  FM 
Sbjct: 115 DKEILEKYSKQDIQVFERAIDHDKDFEFSYAGSQQLIGKYLVQDRDTGEIFETPQYAFML 174

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM L  +ET   +    V+FYN +S       TP +    T   Q SSC +    D L 
Sbjct: 175 IAMCLHQEETGLAQVTHIVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIESGDSLG 234

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +               G+G +   +R +G+ I G      GVIPF K       + +QG
Sbjct: 235 SLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVKSCSQG 294

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++VE  L L+ N G +  R   ++    +  L  KR+      TL
Sbjct: 295 GVRGGAATLYYPFWHLEVENLLVLKNNKGVEENRVRHLDYGVQLNQLMYKRLMNRDYITL 354

Query: 502 FSPDEVSD-LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           FSPD  +D L+DL+ +  + A+E      ++      ++I AV L++ +     +TG  +
Sbjct: 355 FSPDVANDRLYDLFYEADQTAFEELYESLEKDPTVRKKRIKAVDLFQLLAQERAQTGRKY 414

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---EETAVCNLGSINLLAHFANNQFD 617
           I      N +        V  SNLC EI + +S    ++     +G   L+A   +N  D
Sbjct: 415 IFNTHHVNQQGSFTV--PVRMSNLCCEIAIPTSPLDDDDKMAGEIGLCTLMAIVLDNA-D 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
             +     R AVR LDN++D   + ++ A K+    R++G+G+  + S L   +  Y S 
Sbjct: 472 ISEFPKLTRIAVRALDNLLDYQNYPVKAALKAKQR-RSLGVGITNYASWLASNYCDY-SE 529

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
              +   E ME   F+ + AS+ELA+ERGA   +  + + +G+ PID      +  DEL 
Sbjct: 530 AYTDKVHELMEAFQFNLLVASMELAKERGACGLYNDTKYARGLLPIDWY---CKTVDEL- 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +       W+ L+ ++K  G+RNS   A+ P  + + +   +  I+P    + +KS+  G
Sbjct: 586 VAPVYNCDWEWLRSQIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGLVSIKSSKEG 645

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            +  V     N+  Q D +D       + + G + +                        
Sbjct: 646 HYNQVVP---NQNNQIDFYDLLWDMAKRGNKGYLSH------------------------ 678

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +  QK++DQ+ S N   D  +        + +      A   G+KT YY  +R    
Sbjct: 679 --VAVMQKFVDQSISANTNYDPANYEDGKVKTEDIIDDLLYANYYGVKTLYYHNTRDGAG 736

Query: 911 VEKSTLKGVDG 921
            E+   +   G
Sbjct: 737 DEEEAAEDCAG 747


>gi|327401108|ref|YP_004341947.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
 gi|327316616|gb|AEA47232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
          Length = 749

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 185/638 (28%), Positives = 295/638 (46%), Gaps = 79/638 (12%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFHFMCS 354
           +L  RY L    G+ IE P+    RVA  +A  E +     EK A +F+ ++ +  FM +
Sbjct: 10  VLKKRYLLKDEEGNVIETPEQMLWRVANAIAQPEEKYGGDVEKTAKQFFEMMDNQLFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVDDSIDGIFKALWDMAKVQKSGGGTGFSFSRLRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGGKR+GA    L   H D+E+F+  +   G    
Sbjct: 130 KSTMGVASGPVSFMKIFDAATEQIKQGGKRRGANMGVLNVHHPDIEDFITAKWEEGV--- 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  + D FM+ +  +A +   +P                              
Sbjct: 187 -LRNFNISVAVTDAFMEALKNDAEYEQINPRTGE-------------------------- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V RK+ A  ++  ++   +  G P + F D  N  +P  H+G++ ++N C E  L    
Sbjct: 220 -VVRKVPARKIFNLIVEGAWRNGEPGVVFIDTINRHNPTPHIGMIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSIN+     N   D+D L   +  AVR LDNVID+N + + + +K    +R
Sbjct: 279 S----CNLGSINVSKFVKNGDIDWDWLREIVWLAVRFLDNVIDVNNYPLPEIEKMTLANR 334

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L  L IPY S E + +A++ M FI   +  AS  LA+ERG + ++KGS
Sbjct: 335 KIGLGVMGFADLLFKLKIPYDSEEGIALAEKLMSFIQEESHKASQALAEERGVFPNWKGS 394

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W++                                   K I MRN+    IAPT TI+ 
Sbjct: 395 TWEK-----------------------------------KGIKMRNATTTTIAPTGTISI 419

Query: 775 ICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           I G S  I+P Y   + + ++    +F  +N    + L+Q  L+ + +I+ +   +GSI 
Sbjct: 420 IAGCSSGIEPVYALAFKRMHILDGEEFFEINPIFEDTLRQLGLYSDELIAKV-AEEGSIQ 478

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
           +I  IP ++K+I   A +I P W +   +  QK+ D A S  + +    + K ++  +  
Sbjct: 479 DIPEIPKEIKRIFKCALDIAPEWHVRMQAAFQKYTDNAVSKTINMPNHATRKDVEKAFLL 538

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           A+ +G K     R  S       T K    +   +  T
Sbjct: 539 AYELGCKGITVYRDGSREEQVLKTKKAEKKEFRPIKPT 576


>gi|228861542|ref|YP_002854563.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
 gi|227438558|gb|ACP30871.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
          Length = 754

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 193/797 (24%), Positives = 326/797 (40%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 731 RDGSGTDDYEIETPKAE 747


>gi|332797062|ref|YP_004458562.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
 gi|332694797|gb|AEE94264.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
          Length = 841

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/831 (25%), Positives = 377/831 (45%), Gaps = 120/831 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG    F  +++ + +    S + D  +  ++  +  N  D  + +D+     
Sbjct: 16  KIKVIKRDGRKEEFKLEKILVKIGFVPSEVIDGIANDIIQNSKDNTIDTRTIADIVE--- 72

Query: 204 FSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
              R LIE   + P    +  +++L ++   V                            
Sbjct: 73  ---RNLIENSLEHPELMDLAKKYVLARIYNHVYG-------------------------- 103

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQ 318
                         DFD           +D    Y  L++L  RY L    +   IE PQ
Sbjct: 104 ---------KGKWKDFD----------PKDLLLTYNALKVLEARYLLKDPNTLRYIETPQ 144

Query: 319 AFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             F RVA  LA  E +  K          +FY+++S+  F+ +TPTL NSGTR   LS+C
Sbjct: 145 MMFRRVAKYLASVELKYGKSESEVKALEEKFYDIMSNLRFLPNTPTLMNSGTRLGILSAC 204

Query: 372 FLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           F+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + 
Sbjct: 205 FVIPVRDSMTTPEGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVS 264

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+K+ + +   V QGGKR+GA    +  WH ++E+F++ +     D +   + N +  + 
Sbjct: 265 FMKIFDVSTDVVKQGGKRRGANMGVMHVWHAEIEDFINSKSGKLKDVQ-LQNFNISVGVY 323

Query: 487 DLFMKRVTQNAGWTLFSPDEVS---DLHDLY-----------GKEFEIAYENYER----- 527
           D FM++V +     L +P +       HD Y             + EI  E  E+     
Sbjct: 324 DYFMEKVERGEEVPLITPRKTRIPGTDHDYYINKARNYMSEEWVQEEILNELEEKGGAVW 383

Query: 528 -------------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                             E  + R I+A +L+ +++   +++G P + F D  N R P  
Sbjct: 384 LDESKIITVDEALVIAEKEGAIIRWINARSLFNEIVRSAWDSGDPGLLFIDEINRRHPVW 443

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVR 630
           ++G ++++N C E  L         CNLGSINL       +     D+D LA TI+ AVR
Sbjct: 444 YLGKINATNPCGEEPLLPWES----CNLGSINLEKFVKETENGKYIDWDGLAETIKYAVR 499

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID N + +++ +++  + R +GLG+MG    L  L IPY S +A+ ++ +  +FI
Sbjct: 500 LLDNVIDANKYPLKQIEQATKSTRKVGLGVMGLARMLIKLGIPYDSVDAIYLSYQVAKFI 559

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAM------NRT 741
            +HA   S+ELA+E+G++  +    +        P + +  + +V  + +          
Sbjct: 560 YYHAFKTSIELAKEKGSFPVYDPLRYHDIWESARPFEYLLEVTKVEGKPSEYVRKLTAIV 619

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            ++ + ELK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G F  
Sbjct: 620 DKIDFSELKAERIKHGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFME 679

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           ++S  +  L++ +L +  ++  +    G++G    +P  ++K+  TA E+ P + +   +
Sbjct: 680 IDSLFLEYLRKYELDNPEVVKKV-AETGTVGENMFMPATIRKLFRTAHEVPPEYHLLHQA 738

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
             Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S +  
Sbjct: 739 AWQQWNDSGTSKTINLRSEEPPETVERVYLMAWKLGVKGITVYRDKSKSQQ 789



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  ++VIKR+G    F   KI   I          G   S  +  I  ++ +       
Sbjct: 13  SLNKIKVIKRDGRKEEFKLEKILVKI----------GFVPSEVIDGIANDIIQ------- 55

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
             N     +    I D VE +L+++         + ++YVL
Sbjct: 56  --NSKDNTIDTRTIADIVERNLIENSLEHPELMDLAKKYVL 94


>gi|118576941|ref|YP_876684.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
 gi|118195462|gb|ABK78380.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
          Length = 881

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/963 (24%), Positives = 399/963 (41%), Gaps = 158/963 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS- 89
           + KRNG + +F+  KI+ AI KA  A             D+   L    V +L+Q   S 
Sbjct: 13  IRKRNGTLDNFNMDKITNAISKALAATSEAD-------HDLASELAHGVVKKLVQQGFSI 65

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           ++   +EDIQD VE +L++SGH +I + Y+LYR ER  +R  +    +   + P  K   
Sbjct: 66  SIPPSVEDIQDMVESTLIESGHSEIAKAYILYRHERRKIRDEKLRLLNAKALDPVAK--- 122

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESDLETALIFSSR 207
                 SF+   L ++       L++   +I    SE ++ +   +S  DL         
Sbjct: 123 ------SFDLNSLRVLASR--YLLRNNKGEITEGPSELFERVAVLISVGDL-----LYDS 169

Query: 208 TLIEKEPNY--AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            L +KE  +      AR  L+KL        +    K  ++ +      +F   I     
Sbjct: 170 ELFDKEGRHPQDVGEARGYLDKL------DSFDCKFKIGNYYLNKY---HFRALINH--Y 218

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             L  +  M      L   +  +R   +                     E    ++    
Sbjct: 219 VTLAGKGQMKVGFKDLLTQIIAKRHNNY--------------------AERISEYY---- 254

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                              L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI  
Sbjct: 255 ------------------ELMASQDFLPNSPTMMNAGGRLGQLSACFVLNMPDDMGGIMK 296

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +  + AM+ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+
Sbjct: 297 STSDAAMIFKSGGGVGINYSDLRQEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRR 356

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA    +E WH DVE+F+  +   G       + N +  + + F + +            
Sbjct: 357 GANMGIIEAWHPDVEKFITNKTEAGI----LENFNVSVGVWEDFWQAL------------ 400

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                        E  Y            K  R+ISA  L   +    +++  P + F D
Sbjct: 401 ---------AGPGEGKY-----MLRSTAGKPVREISAHQLIDLIAHSAWKSAEPGLIFFD 446

Query: 566 PCNIRSP--QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDY 618
             N  +   +   G + ++N C E +L         CNLGSINL            +FD+
Sbjct: 447 NINKYNVLAKAMGGALRATNPCGEQSLYPYES----CNLGSINLARLVKRKADGEFEFDW 502

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +    IR   R LDNVID+N + +++  +++   R IGLG+MG    L+ L IPY S E
Sbjct: 503 QRYEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESRRIGLGVMGVADLLYKLRIPYNSKE 562

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             ++  +  E ++++++  SV LA+ RG +     + + +G  P+   G     RDE   
Sbjct: 563 GYDLQSKLAEALTYYSMEESVALAKSRGEFPLCPQTEYPEGKIPV--AGYYELARDE--- 617

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WD L  ++K  G+RN+    +APT T++ +   S  ++PS+  ++ K    G 
Sbjct: 618 ---HTYDWDALIDKIKRHGIRNALTTTVAPTGTLSMLADCSNGMEPSFALVFEKRVTVGK 674

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F   N  +   LK+  L+++ +++ +  + GS+  +E IP+ ++KI  TA +I     + 
Sbjct: 675 FFYTNKIIAQILKEHGLYNDDLLARISENYGSLRGLEEIPEWMQKIFVTAMDIHWSDHLM 734

Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS------- 910
             S  Q+WI  A +  + +    +   +   Y  A  +GLK T   R  S          
Sbjct: 735 VQSVWQEWIGNAIAKTINMPNDVTADDVKASYLLAHELGLKGTTVYRDGSRHKQVLHMAS 794

Query: 911 ------------------VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE--C 950
                             VEK   + V  ++NA   + P     ++ +  + T   E  C
Sbjct: 795 ENSEKTFDVYPSLYISEYVEKIQDRYVRTEVNAALSSGPTEEAPTVDLNITETVPEEDLC 854

Query: 951 EVC 953
             C
Sbjct: 855 PTC 857


>gi|305663588|ref|YP_003859876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
 gi|304378157|gb|ADM27996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
          Length = 877

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 201/849 (23%), Positives = 366/849 (43%), Gaps = 127/849 (14%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG---LSE 195
             I   +K++  DG++  FN +++ + + +AC  L D +  + + E           +S 
Sbjct: 13  RSIISTVKVIKRDGSIEPFNLEKVFISISKACKKLCDRNEILSIIEILVGEIKERSEIST 72

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            ++   +     +     P + +V  R+ L K+ ++V                       
Sbjct: 73  LEISDRIERIMISKAISNPKWFEVVKRYELGKIYKDVYGK-------------------- 112

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSR 313
                              D +           +D    +  ++IL  RY +     G  
Sbjct: 113 -----------------RSDVEFDP--------KDLKLTFSAIKILGSRYLIKDPETGRF 147

Query: 314 IEMPQAFFMRVAMGLALKE--------------TEKEKRAVE-FYNLLSSFHFMCSTPTL 358
           IE PQ  F RV+  +A +E               ++ K   E FY LLS   F+ ++PTL
Sbjct: 148 IETPQMLFRRVSRAIATQEYKYCIQQNNNEDLCKDRVKYWEELFYELLSDQRFLPNSPTL 207

Query: 359 FNSGTRHPQLSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
            N+GT+   LS+CF+  V D +      GI+ A++  A++ +  GG G D++ +R  G  
Sbjct: 208 MNAGTKLGILSACFVIPVRDSIVTPDGEGIYDAVRAQAIIFQQGGGTGFDFSELRPEGDI 267

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G + G + F+++ +     + QGGKR+GA    L  WH D+E+F+D +     D 
Sbjct: 268 VSTTGGIASGPLSFMRMFDVNTEVIKQGGKRRGANMGVLHVWHADIEKFIDAKSGQLKDV 327

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL-YGKEF-------EIAYENY 525
               + N +    D F++ V       L +P + +   DL    +F          YE++
Sbjct: 328 N-LQNFNISVGAYDYFIEAVMNGGSIPLINPRKTNLRRDLGNNSKFYAITRARHYLYEDW 386

Query: 526 ERQADRGE----------------------------IKVFRKISAVALWRKMLTMLFETG 557
            ++    E                              +   ++A  L+ K++   +++G
Sbjct: 387 VQEVIINELESKGGSIWLDETILLTIDEAMIIAQEEKAIVGYVNAKKLFEKIVRNAWDSG 446

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P + F D  N R P  ++G ++++N C E  L         CNLGSINL  +   +++ 
Sbjct: 447 DPGLLFIDTINRRHPVWYLGKINATNPCGEQPLLPWES----CNLGSINLEKYVEYDEYG 502

Query: 618 -----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                + +LA  IR  VR +DN+ID+    + + +++    R IG+G+MG+   L  L I
Sbjct: 503 KPRIAWQRLAEDIRVIVRFMDNIIDVAKWPLPQLEEAVKRTRKIGIGVMGWHHMLIKLGI 562

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD---------QGVFPI 723
           PY S +A+ +A    E+I ++A  AS+ELA+ERGA+ ++    +          + +  I
Sbjct: 563 PYDSADALYLAYYLAEWIEYNAALASIELARERGAFPAYDPDKYRPTWLSAKPLEELLAI 622

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            SI           ++   ++ W+ ++   +  G+RN+   +IAPT TI+ I   S SI+
Sbjct: 623 ASIDAKPSKFILELLSSRPQIDWNTVEVLRRKYGIRNAALTSIAPTGTISIIANASPSIE 682

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P +   + +    G F  V+   +  L++ +L    +I ++    GSI +I  +P  +K 
Sbjct: 683 PIFAVAFERHVTVGKFIEVDPLFLEYLRKYELDSPELIEEI-ARRGSISDIPYMPRTIKL 741

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
           +   A +IDP W +   +  Q+W+    S  + L  E +   +  +Y  AW++G K    
Sbjct: 742 LFKGALDIDPKWHVLHQAVWQQWVCAGVSKTVNLRFEATVDDVRNVYLLAWMLGCKGITV 801

Query: 903 LRSRSATSV 911
            R +S    
Sbjct: 802 YRDKSKAQQ 810



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             I  V+VIKR+G +  F+  K+  +I KA            +  ++ I ++ E  V  +
Sbjct: 14  SIISTVKVIKRDGSIEPFNLEKVFISISKACK---------KLCDRNEILSIIEILVGEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREY 118
            + ++ + +    +I D++E  ++          ++ + Y
Sbjct: 65  KERSEISTL----EISDRIERIMISKAISNPKWFEVVKRY 100


>gi|314121809|ref|YP_004063928.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
 gi|313151566|gb|ADR32622.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
          Length = 751

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 328/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+ +++  ++  +C G   +    +      ++ DG++  D++T +I 
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN-IDPYELYETIKPHLRDGMTTRDIQTVIIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S  LI  +EP+Y  V A+  +  LR++V      +            + +     + EG
Sbjct: 60  VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPRS-----------FIDQISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L  S    ++ YL + +K+ERDF   Y G   L ++Y +     G   E PQ   
Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K    FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPLWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348

Query: 501 LFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y    +   E YE       ++  ++I A  L+   +T    T   
Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDLFELFMTERSGTARV 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L +    
Sbjct: 408 YPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + +++A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YA   A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YAD--ANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWAQLREDLVAYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V     N    + L+D A +   K      GN   +                
Sbjct: 638 SKEGSFNQVVP---NIEHNKGLYDYAWVLAKK------GNKPYLT--------------- 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
                  +   KW+ Q+ S N Y D         P    LD +    W  G K  YY  +
Sbjct: 674 -----MVAIMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDL-MYFWYFGGKNLYYHNT 727

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 728 RDGSGTDDYEIEAPKAE 744


>gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis TU502]
 gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis]
          Length = 526

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/524 (34%), Positives = 291/524 (55%), Gaps = 29/524 (5%)

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           K  +  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  WTL  P
Sbjct: 15  KVPIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCP 74

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DE   L D++G +F+  YE YE+Q         + + A  LW  +L    ETG P+I +K
Sbjct: 75  DECRGLQDVWGDDFKKLYEEYEKQGRGR-----KTMKAQKLWFLILQAQIETGTPFICYK 129

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLA 622
           D  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       N  FD+DKL 
Sbjct: 130 DAANSKSNQKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKNNKTFDFDKLK 189

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID+  +++++ K SN  HR +G+G+ G      +L +PY S  A ++
Sbjct: 190 EVTKVITRNLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKL 249

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +         + 
Sbjct: 250 NKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD---------SG 300

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +SG+F VV
Sbjct: 301 LCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVV 360

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +I+ A+ 
Sbjct: 361 NPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAAD 420

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK---- 917
           R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T+     
Sbjct: 421 RGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLL 480

Query: 918 GVDGKLNAVPVTDPNSSTHSLGI--------PSSCTSDTECEVC 953
             + K      T+   +              P++   D EC +C
Sbjct: 481 KSETKEKDSLETNKRQALEPETQKLIACPLRPTNMKDDEECMMC 524


>gi|9632790|ref|NP_049845.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|417656|sp|P32282|RIR1_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Protein B1; AltName: Full=Ribonucleotide
           reductase
 gi|5354414|gb|AAD42621.1|AF158101_208 NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|509024|gb|AAA32527.1| ribonucleoside diphosphate reductase [Enterobacteria phage T4]
          Length = 754

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/801 (24%), Positives = 326/801 (40%), Gaps = 72/801 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPRS-----------FIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y +     G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDE-VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y K+ +   E YE       I+  ++I A  L+  ++T    T   
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRK-KRIKARELFELLMTERSGTARI 410

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           ++ F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L      
Sbjct: 411 YVQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNF--- 467

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      
Sbjct: 468 DWQDQDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFAS 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 527 YED--ANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGELPIDWYN---KKI 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A  +     W  L++ +K  G+RNS   A+ P  + + +   +   +P    + VK 
Sbjct: 582 DQIAAPKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGYEPPRGPVSVKE 640

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V                           +I +   + D   K+         
Sbjct: 641 SKEGSFNQVVP-------------------------NIEHNIDLYDYTWKLAKKGN---- 671

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 672 KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 730

Query: 906 RSATSVEKSTLKGVDGKLNAV 926
           R  +  +   ++       A 
Sbjct: 731 RDGSGTDDYEIETPKADDCAA 751


>gi|322511018|gb|ADX06331.1| putative ribonucleotide reductase large subunit A [Organic Lake
           phycodnavirus 2]
          Length = 831

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 211/882 (23%), Positives = 382/882 (43%), Gaps = 131/882 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++  +      +  ++    ++       ++    ++ +    +Y+ +   +++  +   
Sbjct: 4   VIKRNERKELLSYDKILERTKKLGDKYNLEIQYSGLVLKIIDQLYNNIKTCEIDELMAEQ 63

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             ++     +Y+K+     +    +E   T+ +  Q  +   +   Y     ++ +E   
Sbjct: 64  CASMGSIHYDYSKLAGYICVSNHHKETKHTLLESVQLLSKKYLSTRYYSIVEKHHKE--- 120

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                          L + + YER+F  +Y G + L   Y +  N   +E  Q  +MRV+
Sbjct: 121 ---------------LEHMIVYERNFLIDYFGYKTLERSYLMRNNNKVVENIQHLWMRVS 165

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           + +  +  +K     E Y+ LS   F+ +TPTL+NSGTR PQLSSC+L  + DD + GIF
Sbjct: 166 IEIHGENLDK---VKETYDGLSKKLFIHATPTLYNSGTRRPQLSSCYLLGMEDDSIDGIF 222

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L E A ++K++GG+G     VR  G HI GTNGKS G++P L+V N+TA  V+QGG K
Sbjct: 223 NTLHECASISKWAGGIGLHIHNVRSKGTHISGTNGKSNGIVPMLRVFNNTARYVDQGGGK 282

Query: 444 RKGAVCAYLETWHIDVEEF-------------------------LDLRKNTGDDRRRTHD 478
           R G+   YLE WH D+EEF                         L + K   DD      
Sbjct: 283 RNGSFAIYLEPWHGDIEEFLELRKNHGEEEMRARDLFYALWVPDLFMNKIEKDDDWYLMC 342

Query: 479 MNTANWIPDLFMKRVTQNAGWTL--FSPDEVSDLHDLYGKEFEIAYE-----NYERQADR 531
            N    + +L+ +         +      +     +L+ K  +   E        + A  
Sbjct: 343 PNQCEGLSELYGESFEALYNQYVSEGKYLKKMKARELWFKILDSQMETGTPYMLYKDACN 402

Query: 532 GEIKVF-------------------RKISAVALWRKMLTMLFETGHPWITF--------- 563
            +                       ++ SAV     +    F     +            
Sbjct: 403 KKSNQKNLGTIRSSNLCCEIIEYSDKEESAVCNLASISLSSFVKPSKYKFKGNVNVYTKE 462

Query: 564 --KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------NLGSINLLAHFAN 613
             K    ++    H  ++++++L  E   +S  +E             +G  + +     
Sbjct: 463 KCKWCYYLKHLLDHHKIIYTTHLIPEKEYDSFLKEHTTFPQLFVDQEKIGGFSKVNELLT 522

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FDY  L    +     L+N+ID+N +  EK + SN  HR IG+G+ G      ++++ 
Sbjct: 523 PWFDYKGLHKITKIVTENLNNIIDVNYYPTEKTRLSNKKHRPIGIGVQGLADTFAMMNVA 582

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEV 732
           + S +A +I  +  E +   ++  S+ELA+E+   Y SF GS   QG+F  D   +    
Sbjct: 583 FDSNDAKQINKDIFETMYHASMEKSMELAKEKQGPYDSFDGSPLSQGIFQFDLWNVTP-- 640

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   +++  WD+L+  +   G  NS C+A  PTA+ + I   ++  +P   N+Y +
Sbjct: 641 --------SNKYNWDKLRNNIMEFGTYNSLCLAPMPTASTSQILSNNECFEPFTSNMYTR 692

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F V+N  L+ EL   ++W+ ++ +++  H GSI  I+ IPD +K+ +   +E+ 
Sbjct: 693 RTLAGEFMVINKHLMKELIDLNIWNSSIKNEIVKHKGSIQTIKEIPDYIKQKYKIVWEMS 752

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A  R  +I Q+QS+NL++++P+ K L  ++  AW  GLKT  YYLR ++    
Sbjct: 753 MKSIIDMAKDRGAYICQSQSMNLWVEDPNYKILTNMHLYAWKSGLKTGMYYLRRKAKHQA 812

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++ T+         VP  +                D EC +C
Sbjct: 813 QQFTV---------VPDKE----------------DPECLMC 829


>gi|308814594|ref|YP_003934868.1| aerobic NDP reductase large subunit [Shigella phage SP18]
 gi|308206186|gb|ADO19585.1| aerobic NDP reductase large subunit [Shigella phage SP18]
          Length = 751

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/797 (24%), Positives = 327/797 (41%), Gaps = 72/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+ +++  ++  +C G   +    +      ++ DG++  D++T +I 
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEGTN-IDPYELYETIKPHLRDGMTTRDIQTVIIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S  LI  +EP+Y  V A+  +  LR++V      +            + +     + EG
Sbjct: 60  VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPRS-----------FIDQISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L  S    ++ YL + +K+ERDF   Y G   L ++Y +     G   E PQ   
Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K    FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348

Query: 501 LFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E   +L+  Y    +   E YE       ++  ++I A  ++   +T    T   
Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK-KRIKAKDVFELFMTERSGTARV 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITL-----NSSSEETAVCNLGSINLLAHFAN 613
           +  F D  N  +P  +    +  SNLC EI +     NS   E  +C L +  L +    
Sbjct: 408 YPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + +++A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YA   A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YAD--ANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWAQLREDLVEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V     N    + L+D A +          GN   +                
Sbjct: 638 SKEGSFNQVVP---NIEHNKGLYDYAWVL------AKQGNKPYLT--------------- 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
                  +   KWI Q+ S N Y D         P    LD +    W  G K  YY  +
Sbjct: 674 -----QVAIMLKWICQSASANTYYDPQNYPKGKVPMSVMLDDL-MYFWYFGGKNLYYHNT 727

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 728 RDGSGTDDYEIEAPKAE 744


>gi|283832327|ref|ZP_06352068.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071974|gb|EFE10083.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 653

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 179/681 (26%), Positives = 280/681 (41%), Gaps = 67/681 (9%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEM 316
            +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E 
Sbjct: 1   MVEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYES 60

Query: 317 PQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
            Q  ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L 
Sbjct: 61  AQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLI 120

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I               G+G +   +R LG+ I G      G IPF K     
Sbjct: 121 ECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTA 180

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ 
Sbjct: 181 VKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLL 240

Query: 495 QNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+ 
Sbjct: 241 KGGDITLFSPSDVPGLYDAFFADQDEFERLYTQYENDDSIRK----QRVKAVELFSLMMQ 296

Query: 552 MLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNL 602
               TG  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L
Sbjct: 297 ERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTL 356

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A  +      D+L      AVR LD ++D   + I  AK+     R +G+G++ 
Sbjct: 357 SAFNLGAINS-----LDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVIN 411

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L      Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ P
Sbjct: 412 YAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYSQGILP 471

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+         +   N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 472 IDTYKKDL----DAISNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 527

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + +K++  G    V         +       ++ ++  +DG +           
Sbjct: 528 EPPRGYVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPSNDGYLQ---------- 572

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLM 895
                                QK+IDQ+ S N   D    PSGK    +L      A+  
Sbjct: 573 ----------------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKF 616

Query: 896 GLKTTYYLRSRSATSVEKSTL 916
           G+KT YY  +R      +  L
Sbjct: 617 GVKTLYYQNTRDGAEDSQDDL 637


>gi|302349050|ref|YP_003816688.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
 gi|302329462|gb|ADL19657.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
          Length = 756

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/821 (25%), Positives = 362/821 (44%), Gaps = 92/821 (11%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
                ++    ++A      +    +  E  +      S  +L T  + +  +    +P 
Sbjct: 3   ELTRTKVIAWAKQASRD-AGLDPSQIEFELLRL--QASSPQELFTKALSTFASWSLLDPR 59

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           + +   R +L K+  E                              +G +A    E +  
Sbjct: 60  WEEAARRLILYKIYEE------------------------------KGSEAPGKLEGIES 89

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--- 332
           +                  ++GL +LY+RY +   G  +E P     RVA  +A  E   
Sbjct: 90  WA----------------TWVGLNLLYERYLVKRKGFVVETPNEALERVASFVAEAELSL 133

Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
               +    EFY ++SS  FM ++PT+ NSGT++ QL++CF+  + DD+  IF AL   A
Sbjct: 134 GGSLDAARQEFYEIMSSGRFMPNSPTIMNSGTKYHQLAACFVIPLEDDMDSIFSALNTAA 193

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            + K   G G D+TP+RG G+ +    G + G + F+K+ ++ A  + +GG+R+ A+   
Sbjct: 194 WVFKTGAGAGFDFTPLRGRGSPLSF-GGTASGPVSFMKLFDEVADVIKEGGRRRAAMMGV 252

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H+D+E+F++ + + G       + N +  + D FM     ++ W L+ P+E   L 
Sbjct: 253 LHDVHVDLEDFINSKLSGG-----LENFNISVGVHDAFMMAAASDSEWNLYDPNECPQLV 307

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            L   +    +               R + A +L  +     +ETG P + F D  N  +
Sbjct: 308 GLLSGDLPDLW---------RRCSPRRTVRASSLLEEAARAAWETGDPGLVFLDTINQHN 358

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           P   +G + ++N C E  L S       CNLGS+NL  +  +   D++ L   IR AVR 
Sbjct: 359 PTPRLGRIRATNPCGETPLLSWE----ACNLGSLNLGRYVKDEGIDWELLEHDIRIAVRF 414

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LD+VI+ + +   + + +    R IGLG+MG+   L  L IPY S  A+ +AD+ MEFI+
Sbjct: 415 LDDVIETSWYPRPEIEAAVKRTRKIGLGVMGWADMLAKLKIPYDSDSALYLADKLMEFIA 474

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSR 743
           + A   S  L++ERG Y  F GS+   G F  +     +++ DE          +N   +
Sbjct: 475 YVARDESNRLSRERGPYPEFPGSIHKDGRFNFEPQVSSSQIYDESKVSDAVHSIVNSRPK 534

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD ++  +   G RN+    IAPT +I+ I   S SI+P Y  +Y++ +    +  +N
Sbjct: 535 LDWDRVRSEMME-GTRNATMTTIAPTGSISIIADASSSIEPFYSLIYIRQSSLFSWVELN 593

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            FL + L++ +  +   I D+  H GS+  +  +P D++ +  TA +ID  W +   +  
Sbjct: 594 RFLRDWLQESNNLNAEKIKDVIRHGGSVRGLSWVPSDVQAVLGTALDIDWRWHVRMQAVF 653

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q+W+D A S  + +  + +   +  ++ +AW +  K     R +S      S  + +D  
Sbjct: 654 QRWVDNAVSKTVNMRRDATVDDVKGVFIEAWRLKCKGITVFRDQSKGVQVMSVNQNIDAL 713

Query: 923 LNAVP-------VTDPNSSTHSLGIPSSCTSDT---ECEVC 953
           +   P               +  G   S  S+     C  C
Sbjct: 714 IREPPNLRIRVKAKMVPGVINVEGSALSAVSEEYAGGCPTC 754


>gi|32453720|ref|NP_861929.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage RB69]
 gi|32350539|gb|AAP76138.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           RB69]
          Length = 751

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/799 (23%), Positives = 327/799 (40%), Gaps = 76/799 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G   +F+++++  ++   C G Q +    +  E   ++ DG+S  D++   I 
Sbjct: 1   MQVTKSSGVSQNFDAQKIIQVLTWQCEGTQ-IDPYELYEEIKTHLVDGMSTKDIQKICIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +EP+Y  V A+ L+  LR++V                   + ++    + EG
Sbjct: 60  VAANSISVEEPDYQYVAAKGLMFALRKDVYGQFEPPA-----------FIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L       +++YL + +K+ERDF   Y G   L ++Y +     G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   ET ++ K  + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 229 KSINKTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    I DL M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMMERLGKNDYIT 348

Query: 501 LFSPDEVS-DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP E+S +L+  + ++ +   E YE+      I+  ++I A+ L+   +T    T   
Sbjct: 349 LFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRK-KRIKALELFELFMTERSGTARI 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFAN 613
           +  F D  N  +P  +    +  SNLC EI + +        E  +C L +  L      
Sbjct: 408 YPQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGLCTLSAFVLDKF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + + +A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A  +  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YED--ANYLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKWSRGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W   +   K  G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWKNFELNSKEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G+F  V   +                                +    ++  A+++  
Sbjct: 638 SKEGNFRQVVPNI--------------------------------EHNMSLYDYAWKLAK 665

Query: 854 MW---LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYL 903
                 +   +   KW+ Q+ S N Y D    +K       +       W  G K  YY 
Sbjct: 666 KGNKPYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLYFWYFGGKNLYYH 725

Query: 904 RSRSATSVEKSTLKGVDGK 922
            +R  +  +   L+    +
Sbjct: 726 NTRDGSGTDDYELETPKAE 744


>gi|310722638|ref|YP_003969461.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
 gi|306021481|gb|ADM80015.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
          Length = 744

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 196/797 (24%), Positives = 317/797 (39%), Gaps = 78/797 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G    F   +L  I+  A  G + +S K +L     ++ +G+S   ++   I 
Sbjct: 1   MLVRKSSGITEEFTVGKLFKILSFATEGTR-ISPKEILDGIMPSITEGMSTKRIQEIAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E  +Y  V AR  +  LR++V       P     H M           + +G
Sbjct: 60  FAADRISIEQSDYQYVAARLQMYALRKQVYNQF--DPIHLKPHVMD---------LVMDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L     D +   L   +K++RDF   Y G+    ++Y       G   E PQ  +
Sbjct: 109 KYDPELCSKWTDEEFEELNAYIKHDRDFNLAYAGVMQFKEKYLAKDRSTGEVFETPQMLY 168

Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L  +E T++ ++   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQEEKTDRLQKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIECGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  L ++R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKLMLERLKNDDYIT 348

Query: 501 LFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSPD +  +L+DLY  +     E YE   +     + ++I A  L+         TG  
Sbjct: 349 LFSPDVQKGELYDLYYSDPVKFRELYEMLENEP-FLIKKRIKASELFNLFAQERSGTGRI 407

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLGSINLLAHFAN 613
           +  F D     S   +   +  SNLC EI L +         E A+C L + NL A    
Sbjct: 408 YPMFIDNV--NSATPYKEPIRQSNLCIEIALPTYPVHRDGTGEIALCTLAAYNLGAIEG- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
               Y+   +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L    + 
Sbjct: 465 ----YNDFLNVARAAVRALDNLLDYQEYPVVQA-LAAKKRRALGIGVTNFAYFLAKNFVK 519

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+   A ++   +ME + F  I AS+ELA+ERGA      + W  G+ PID         
Sbjct: 520 YSDGSANKLVHRTMEMMQFANIVASMELAKERGASEWHHKTKWADGLLPIDWYNKNV--- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +  +    ++ W+ L+  +K  GMRN    A  P  + + I   +  I+P    +  K 
Sbjct: 577 -DSIVPNDLKMDWEWLRGEIKKYGMRNDTLSAFMPCESSSQITNSTNGIEPPRGLVSTKQ 635

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI-- 851
           +  G    V + LV E++                                 + TA+ +  
Sbjct: 636 SKDG----VFNQLVPEVEMLG----------------------------SEYETAWAMAK 663

Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++  +  QK++DQ  S N Y        D+   K +     +A   G+K+ YY 
Sbjct: 664 RGMKGYLDIVAIMQKFVDQMISANTYYVPSIYPGDKLPMKVVLKDMSRAQKYGVKSLYYS 723

Query: 904 RSRSATSVEKSTLKGVD 920
                    + T    D
Sbjct: 724 NLHDGADGTEETDSSCD 740


>gi|329766042|ref|ZP_08257603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137497|gb|EGG41772.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 882

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 202/892 (22%), Positives = 370/892 (41%), Gaps = 130/892 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK- 88
           ++ KR+G VT+F+ +KIS AI KA  A            + +  +L  + V +L++    
Sbjct: 12  EIRKRSGAVTAFNQNKISNAIFKALAATSKAD-------RVLADHLANKVVQKLVEQGFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           ++    +EDIQD VE +L+ SG+  I + Y++YR ER  +R  +            L   
Sbjct: 65  NSRAPSVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEK---------MKVLNAK 115

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             D     F+   L ++        ++  ++I+ S               E   I     
Sbjct: 116 SLDSVSKEFDLNCLRVLASR--YLFRNNKNEIIES----------PTQMFERVAIL--VG 161

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKA 266
           + +   +         + +   E  + + K        ++   +    +F   I   V  
Sbjct: 162 IGDILYDAQVFDKSGNISQSTDEARSYLEKLDNFDYKFKIGDYFLNKWHFRSLINHYV-- 219

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            L  +  M      L   +             +   D Y   I                 
Sbjct: 220 TLASKGQMKVSFKDLLTLI-----------AAKKF-DSYADKIT---------------- 251

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                         E+++L+++  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I  +
Sbjct: 252 --------------EYFDLMTAQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMEKIMKS 297

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+G
Sbjct: 298 TSDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRG 357

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTLFSP 504
           A    +E WH DVE+F+  +   G       + N +  I + F   +  T++  + L SP
Sbjct: 358 ANMGIIEAWHPDVEKFITNKTEPGV----LENFNVSVGIWEDFWNALVNTEDGKYMLRSP 413

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +                            K  ++I+A  L   +    +++  P + F 
Sbjct: 414 RD---------------------------RKPVKEINAHQLIDLIALSAWKSAEPGLIFF 446

Query: 565 DPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFD 617
           D  N  +         + ++N C E +L         CNLGSINL+           +FD
Sbjct: 447 DQINKYNVFAKARQAPLRATNPCGEQSLYPYES----CNLGSINLVNLVKRQADGEYEFD 502

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +   TIR   R LDN+ID+N + +++   ++   R IGLG+MG    L+ L IPY S 
Sbjct: 503 WQRYEETIRKTTRFLDNIIDVNHYPVKEIDIASKDSRRIGLGVMGVADLLYKLKIPYNSK 562

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E  E+  +  E ++++++  SV LA+ RG +     + + +G  PI       +      
Sbjct: 563 EGYELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPIAGYYEKPK------ 616

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    WD L +++K  G+RN     +APT T++ I   S  ++P++  ++ K    G
Sbjct: 617 --ESHCYEWDALIEKIKKHGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVG 674

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F   N  +   LK+  L+ + +++ +  + GS+  I  IP  ++ ++ TA +I     +
Sbjct: 675 RFFYTNKIVEEVLKEHGLYSDELLAKIADNYGSLKGIPEIPQWMQDVYVTAMDIHWADHL 734

Query: 858 ESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +    Q WI  A +  + +    + + +   Y  A  +GLK     R  S 
Sbjct: 735 MAQGVWQDWIGNAIAKTINMPYDVTAEDVKSAYLLAHELGLKGITVYRDGSR 786


>gi|303398730|emb|CBW46711.1| F778R [African swine fever virus Georgia 2007/1]
          Length = 778

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/786 (27%), Positives = 368/786 (46%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++  K  +         L P++    
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFV--- 91

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 92  -------DVVYKYKAIFD-----SYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   +      K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGRVVNMKMILLTYDLLSQHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  KS G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLKSNGIQNYIVLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +  G   + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF+  Y  Y  +     +   +
Sbjct: 320 DQIHNRGDGKWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAK 379

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I     ++ ++ +    G+P+I FKD  N +S   HVG + +SNLC E+T+     + A
Sbjct: 380 EI-IKEWFKTVVQV----GNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSI-------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +   W +L+      G+RN    A+ P
Sbjct: 555 ASKGLLQPDLWVRCGDLVSSWEERVAQTTQGVLTPKRWSQLRLAAMQ-GLRNGYVTALMP 613

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    
Sbjct: 614 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAG 673

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 674 GSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 733

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   NA                      
Sbjct: 734 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA---------------------- 771

Query: 948 TECEVC 953
            +CE C
Sbjct: 772 -DCEAC 776


>gi|284175618|ref|ZP_06389587.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus 98/2]
 gi|261602517|gb|ACX92120.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus solfataricus 98/2]
          Length = 838

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/833 (25%), Positives = 359/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T +I
Sbjct: 12  KIKVIKRDGKVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRVI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DFD          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K   E       FY ++S   F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQAD---------- 530
             D FM  V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGV 377

Query: 531 ------------------RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V + ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL             D+D LA  IR  
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          DS+   AE+ D      +   +
Sbjct: 554 FIFYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMH 732

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGKVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRVIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|9628153|ref|NP_042739.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|1172937|sp|P42491|RIR1_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|780415|gb|AAA65275.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|162849428|emb|CAN10393.1| Ribonucleotide reductase large subunit [African swine fever virus
           OURT 88/3]
 gi|291289489|emb|CBH29146.1| BA71V-F778R [African swine fever virus E75]
 gi|1097434|prf||2113434AU ribonucleotide reductase:SUBUNIT=large
          Length = 778

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 370/786 (47%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++  K  +         L P++    
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFV--- 91

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 92  -------DVVYKYKAIFD-----SYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +  G   + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF+  Y  Y  +     +   +
Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAK 379

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I     ++ ++ +    G+P+I FKD  N +S   HVG + +SNLC E+T+     + A
Sbjct: 380 EI-IKEWFKTVIQV----GNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSI-------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +R  W +L+      G+RN    A+ P
Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMP 613

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    
Sbjct: 614 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAG 673

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 674 GSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 733

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   NA                      
Sbjct: 734 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA---------------------- 771

Query: 948 TECEVC 953
            +CE C
Sbjct: 772 -DCEAC 776


>gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis
           mellifera]
          Length = 610

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 195/522 (37%), Positives = 291/522 (55%), Gaps = 42/522 (8%)

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDL+KNTG +  R  ++  A WIPDLFMKRV  N  WTL  P E   L D++G EF
Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           EI Y  YE      E +  R+I A  LW  +L    ETG P++ +KD CN +S  Q++G 
Sbjct: 162 EILYTRYEN-----EKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGT 216

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTE+   SS +E AVCNL SI  N+  +  N  FD+ KL    +     LD +I
Sbjct: 217 IKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKII 276

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + I +A+KSN  HR IG+G+ G   A  L+  P+ S EA ++  +  E + + A+ 
Sbjct: 277 DVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALE 336

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+E+G Y +++GS   +G+   D   ++           T+   W  LKK++   
Sbjct: 337 ASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP----------TNLWDWTILKKKIAKH 386

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +RDLW
Sbjct: 387 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 446

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           DE M +++  ++GSI +IERIPDDLK ++ T +EI    +++ A+ R  +IDQ+QSLN++
Sbjct: 447 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 506

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV--------- 926
           + +P+ +KL  ++   W MGLKT  YYLR++ A +  + T+     +  +          
Sbjct: 507 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSKLRNTSNITSNQSINS 566

Query: 927 ---------------PVTDPNSSTHSLGIPSSCTSDTECEVC 953
                           + D N     + +  S  +   C  C
Sbjct: 567 ENDNNEELNNSSQNGWLQDQNKEDVDIVLACSRENGDACMAC 608



 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
             ++ ++  DG     +  ++   + + C  L    +    +       +Y G++  +L+
Sbjct: 4   KGRMYVIKRDGRKEDVHFDKITSRISKLCYNLDMDYIDPSAITFRVISGLYSGVTTVELD 63

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV----YKKPQKATHHEMQCLYPEY 255
                ++ T+  K P+YA + AR  +  L +E   +     +   +K T  E       +
Sbjct: 64  NLAAETAATMTTKHPDYAILAARIAISNLHKETTKSFSVFEFLDLKKNTGKEENRARELF 123

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           +  +I +    R+L   +      + +  L       FE     ILY RY    N  R +
Sbjct: 124 YALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEFE-----ILYTRY---ENEKRYK 175

Query: 316 M 316
            
Sbjct: 176 R 176


>gi|15897814|ref|NP_342419.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
 gi|13814111|gb|AAK41209.1| Ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
          Length = 841

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/833 (25%), Positives = 359/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T +I
Sbjct: 15  KIKVIKRDGKVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRVI 66

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 67  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 102

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DFD          E+D    Y  L++L  RY L    +   IE 
Sbjct: 103 -----------KGKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 141

Query: 317 PQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K   E       FY ++S   F+ ++PTL NS TR   LS
Sbjct: 142 PQMLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILS 201

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 202 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 261

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 262 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 320

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQAD---------- 530
             D FM  V +     L +P +       +      A     E + ++            
Sbjct: 321 AYDYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGV 380

Query: 531 ------------------RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V + ++A +L+ +++   +++G P + F D  N R P
Sbjct: 381 VSLDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 440

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL             D+D LA  IR  
Sbjct: 441 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFVIERDGKAAIDWDGLAEIIRYG 496

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 497 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 556

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          DS+   AE+ D      +   +
Sbjct: 557 FIFYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTS 616

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 617 VVDKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 676

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 677 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVMH 735

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 736 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 788



 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 9   YSTSLRKIKVIKRDGKVDEFKLEKILS------------------KLSSVPDEVTDGIVN 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 51  DV-QANVKDNAIDTRVIADIVERNLIENSLKYPFLMELAKRYVL 93


>gi|162849255|emb|CAN10144.1| Ribonucleotide reductase large subunit [African swine fever virus
           Benin 97/1]
          Length = 778

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/786 (27%), Positives = 369/786 (46%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++  K  +         L P++    
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFV--- 91

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 92  -------DVVYKYKAIFD-----SYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +  G   + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF+  Y  Y  +     +   +
Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAK 379

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I     ++ ++ +    G+P+I FKD  N +S   HVG + +SNLC E+ +     + A
Sbjct: 380 EI-IKEWFKTVIQV----GNPYIGFKDAINRKSNLSHVGTITNSNLCIEVIIPCWEGDKA 434

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSI-------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +R  W +L+      G+RN    A+ P
Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQ-GVRNGYLTALMP 613

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    
Sbjct: 614 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAG 673

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 674 GSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 733

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   NA                      
Sbjct: 734 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA---------------------- 771

Query: 948 TECEVC 953
            +CE C
Sbjct: 772 -DCEAC 776


>gi|215275537|sp|P0C8H9|RIR1_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 368/786 (46%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++  K  +         L P++    
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFV--- 91

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 92  -------DVVYKYKAIFD-----SYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL++ +  G   + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF+  Y  Y  +     +    
Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTT-- 377

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  + +     + + G+P+I FKD  N +S   HVG + +SNLC E+T+     + A
Sbjct: 378 ---AKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L I + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSI-------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +R  W +L+      G+RN    A+ P
Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYLTALMP 613

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    
Sbjct: 614 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAG 673

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 674 GSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 733

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   NA                      
Sbjct: 734 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA---------------------- 771

Query: 948 TECEVC 953
            +CE C
Sbjct: 772 -DCEAC 776


>gi|132601|sp|P26685|RIR1_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|554615|gb|AAA42732.1| ribonuclease reductase [African swine fever virus]
          Length = 779

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/825 (26%), Positives = 373/825 (45%), Gaps = 86/825 (10%)

Query: 162 LEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           +   +  A  G   +V    +L     +   G         LI     L     +Y+ + 
Sbjct: 6   IVKKLASATYGKALNVDLNKLLQALNHHSLQG---------LISYCSALTILHYDYSTLA 56

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           AR  +  L +   ++  K            L   +            ++++    FD   
Sbjct: 57  ARLSVYLLHQSTASSFSKAVSLQAAQSCSRLSSHFV----------DVVYKYKAIFD--- 103

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA-LKETEKEKR 338
             + + Y RD+    LG++ + + Y L   +G  +E PQ  +MRVA+ +  +      K 
Sbjct: 104 --SYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGRVVNMKM 161

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +++   G
Sbjct: 162 ILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGG 221

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   + +R   + I G+  +S G+  ++ + N +    NQGG R GA   YLE WH D
Sbjct: 222 GIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQD 281

Query: 459 VEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSD 509
           +  FL + +  G   + R    ++    W+PDLFM+ +        +  W LFSPD+  +
Sbjct: 282 IFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYLFSPDQAPN 341

Query: 510 LHDLYG----------KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LH ++           +EF+  Y  Y  +     +   ++I     ++ ++ +    G+P
Sbjct: 342 LHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEI-IKEWFKTVVQV----GNP 396

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQF 616
           +I FKD  N +S   HVG + +SNLC EIT+        E  VCNL ++NL A    + +
Sbjct: 397 YIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCNLAAVNLAAFIRESSY 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           DY  L          LDN+ID   +  E  ++SN  HR IG+G+ G       L + + S
Sbjct: 457 DYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGS 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA+ I +     + + A+  S+ELA+E+G++ SF GS   +G+   D      ++    
Sbjct: 517 PEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLIPSW 576

Query: 737 AMNRTSRLP-------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                           W +L+      G+RN    A+ PTAT +N  G ++  +P   NL
Sbjct: 577 ENRVAQTTQGVLTPKKWWQLR-LAAIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNL 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F ++N +L+++L++ +LW E +   L    GSI +I  IP ++++ + T+ 
Sbjct: 636 YTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQHILDIPAEIRERYKTSR 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY      
Sbjct: 696 EMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPG 755

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              +K  ++  +   NA                       +CE C
Sbjct: 756 AGTQKKIIRNSEKACNA-----------------------DCEAC 777


>gi|215275536|sp|P0C8H8|RIR1_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 368/786 (46%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++  K  +         L P++    
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSFSKAVRLQAAQSCSRLSPQFV--- 91

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 92  -------DVVYKYKAIFD-----SYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL++ +  G   + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF+  Y  Y  +     +    
Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTT-- 377

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  + +     + + G+P+I FKD  N +S   HVG + +SNLC E+T+     + A
Sbjct: 378 ---AKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 599 ---VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L I + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSI-------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +R  W +L+      G+RN    A+ P
Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYLTALMP 613

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    
Sbjct: 614 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAG 673

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 674 GSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 733

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   NA                      
Sbjct: 734 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA---------------------- 771

Query: 948 TECEVC 953
            +CE C
Sbjct: 772 -DCEAC 776


>gi|13540923|ref|NP_110611.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           volcanium GSS1]
          Length = 767

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/930 (25%), Positives = 388/930 (41%), Gaps = 180/930 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+      +       + L ++ V RL    K+
Sbjct: 4   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDA-------ETLADKVVERL----KN 52

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE  LM S         + + Y+LYRE+R  +R  +            
Sbjct: 53  IERPTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLG-------- 104

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
               + D   ++ N+ +    V EA   L+D   K                      +I 
Sbjct: 105 ----VKDDLKLTLNAVK----VLEARYLLKDEDGK----------------------IIE 134

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + R +      + +V +   +                      ++ LY   F  Y + G 
Sbjct: 135 TPRQM------FRRVASHIGI----------------------IEALYD--FMEYKKTGK 164

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMR 323
               + E+      V L  +    R  AF Y+                 +E   + F   
Sbjct: 165 ----IPENAEKIGKVSLTQEEVLRR--AFNYM------------KEDGIMEGTFEEFMD- 205

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
               L+ K T       +F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  I
Sbjct: 206 ---FLSTKGTSAHLYINKFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDI 262

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  L+  A++ K  GG G  ++ +R     +  T G + G + F+K+ + T   + QGGK
Sbjct: 263 FETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGK 322

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    L   H D+ EF+  + +   + +   + N +  + D F +++  +    L +
Sbjct: 323 RRGANMGILNYNHPDIMEFVLSKDS---ENKVLSNFNISVGVTDEFFEKLDNDDYVDLIN 379

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P                               V ++I A  LW  ++   ++T  P + F
Sbjct: 380 PRTKK---------------------------VTKRIKAKELWDAIIDQAWKTADPGLIF 412

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
            D  N ++P ++VG + S+N C E  L         CNLGSINL  +      DYD+L  
Sbjct: 413 LDEINRKNPVKNVGDIESTNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRE 468

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A R LD+VID N   +E+ KK     R IGLG+MGF   L  L +PY S EA+EIA
Sbjct: 469 TVWLATRFLDDVIDANKFPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIA 528

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           ++ M FI+  +  AS  LA+ERG + ++ GS W+                          
Sbjct: 529 EKVMSFINEESHKASQHLAEERGVFPAWYGSEWE-------------------------- 562

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVV 802
                 K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G +   V
Sbjct: 563 ------KEGIK---MRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEV 613

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N     + +   L+ E ++  +    G++ NIE I +++KKI  TA E+DP W +   + 
Sbjct: 614 NPLFEEKTRSLGLYSEELMRKV-AETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQAT 671

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q++ D   S  + +  + + + +   YR A  +  K     R +S T    +       
Sbjct: 672 FQRYCDSGVSKTINMKSDATREDIAKAYRMAKDLHCKGITVYRDKSKTVQVLTAGTTETK 731

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           K     V +  +      +    T D  C 
Sbjct: 732 KTEEKEVIELVTKMPDKYLKIDSTFDPACP 761


>gi|14324305|dbj|BAB59233.1| ribonucleotide reductase [Thermoplasma volcanium GSS1]
          Length = 769

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/930 (25%), Positives = 388/930 (41%), Gaps = 180/930 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+      +       + L ++ V RL    K+
Sbjct: 6   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDA-------ETLADKVVERL----KN 54

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE  LM S         + + Y+LYRE+R  +R  +            
Sbjct: 55  IERPTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLG-------- 106

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
               + D   ++ N+ +    V EA   L+D   K                      +I 
Sbjct: 107 ----VKDDLKLTLNAVK----VLEARYLLKDEDGK----------------------IIE 136

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + R +      + +V +   +                      ++ LY   F  Y + G 
Sbjct: 137 TPRQM------FRRVASHIGI----------------------IEALYD--FMEYKKTGK 166

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMR 323
               + E+      V L  +    R  AF Y+                 +E   + F   
Sbjct: 167 ----IPENAEKIGKVSLTQEEVLRR--AFNYM------------KEDGIMEGTFEEFMD- 207

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
               L+ K T       +F  ++SS  F+ ++PTL N+GT+  QLS+CF+  V D +  I
Sbjct: 208 ---FLSTKGTSAHLYINKFEEMMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDI 264

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  L+  A++ K  GG G  ++ +R     +  T G + G + F+K+ + T   + QGGK
Sbjct: 265 FETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIKQGGK 324

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    L   H D+ EF+  + +   + +   + N +  + D F +++  +    L +
Sbjct: 325 RRGANMGILNYNHPDIMEFVLSKDS---ENKVLSNFNISVGVTDEFFEKLDNDDYVDLIN 381

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P                               V ++I A  LW  ++   ++T  P + F
Sbjct: 382 PRTKK---------------------------VTKRIKAKELWDAIIDQAWKTADPGLIF 414

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
            D  N ++P ++VG + S+N C E  L         CNLGSINL  +      DYD+L  
Sbjct: 415 LDEINRKNPVKNVGDIESTNPCGEQPLLPYES----CNLGSINLSKYVNGKDIDYDRLRE 470

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  A R LD+VID N   +E+ KK     R IGLG+MGF   L  L +PY S EA+EIA
Sbjct: 471 TVWLATRFLDDVIDANKFPVEQIKKVTRMTRKIGLGVMGFADLLIKLEVPYNSWEALEIA 530

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           ++ M FI+  +  AS  LA+ERG + ++ GS W+                          
Sbjct: 531 EKVMSFINEESHKASQHLAEERGVFPAWYGSEWE-------------------------- 564

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVV 802
                 K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G +   V
Sbjct: 565 ------KEGIK---MRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEV 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N     + +   L+ E ++  +    G++ NIE I +++KKI  TA E+DP W +   + 
Sbjct: 616 NPLFEEKTRSLGLYSEELMRKV-AETGNLENIE-INEEIKKIFVTAHEVDPQWHVLMQAT 673

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q++ D   S  + +  + + + +   YR A  +  K     R +S T    +       
Sbjct: 674 FQRYCDSGVSKTINMKSDATREDIAKAYRMAKDLHCKGITVYRDKSKTVQVLTAGTTETK 733

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           K     V +  +      +    T D  C 
Sbjct: 734 KTEEKEVIELVTKMPDKYLKIDSTFDPACP 763


>gi|323474617|gb|ADX85223.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus REY15A]
 gi|323477349|gb|ADX82587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus HVE10/4]
          Length = 838

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/833 (25%), Positives = 362/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T  I
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRAI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DF+          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E + +K          +FY ++SS  F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYDKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQADR--------- 531
             D FM+ V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 532 -------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL           + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          +S+  +AEV D      +   +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVTDKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGRVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRAIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 583

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 201/584 (34%), Positives = 307/584 (52%), Gaps = 28/584 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE--MQCLYPEYFCRYIEEG 263
             + +   P+YA +  R    KL  +V  +  +  ++   +       Y      + +  
Sbjct: 63  IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSPISSAFYKVV 122

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            K              +L   +   RD+   Y G++ L   Y L I+G   E+PQ  FMR
Sbjct: 123 KKHG-----------EFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  +  D + G
Sbjct: 172 VAIGIHQNDI---NAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDG 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG
Sbjct: 229 IFKTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGG 288

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV +N+ WTL
Sbjct: 289 GKRPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L    ETG P++
Sbjct: 349 FSPNEAVGLSDVYGEEFEKLYCKYESEGFG------TKVSAHKLWLAILHSQTETGGPYM 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FD 617
            +KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +    +    FD
Sbjct: 403 LYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFD 462

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       L +P+ S 
Sbjct: 463 FEKLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSA 522

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            A  +  +  E I   A+ ASVELA + G Y + +     +  +
Sbjct: 523 MAKTLNIQIFETIYHAALEASVELAMKEGPYETSRAHRHQREYY 566


>gi|206889598|ref|YP_002247982.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741536|gb|ACI20593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 741

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/655 (27%), Positives = 301/655 (45%), Gaps = 84/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLAL-------KETEKEKRAVEF 342
           F      +++L  RY         IE P+  F RVA  +A         E E  +   EF
Sbjct: 8   FELTDNAIEVLKRRYLKKNEDGILIETPEELFTRVATAIAQIDTIYGKSEKEVYRTKEEF 67

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + L++S  F+ ++PTL N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G 
Sbjct: 68  FELMTSLRFLPNSPTLMNAGTPLGQLSACFVLPVEDSMEGIFDAVKYAAIIHKSGGGTGF 127

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  G  +  T G S G + F+ V +    AV QGG+R+GA    L   H D+ EF
Sbjct: 128 SFSRLRPKGDVVGSTKGISSGPVSFMSVFDSATEAVKQGGRRRGANMGLLRVDHPDILEF 187

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +    DD  +  + N +  + + FMK V  +  + L +P                  
Sbjct: 188 ITCK----DDLTKFTNFNISVGLTEEFMKAVINDEEYELINPRSGK-------------- 229

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                        + +++ A  ++  ++   ++ G P I F D  N  +P   +G + ++
Sbjct: 230 -------------IVKRLKAKEVFDLIVHQAWKNGEPGIVFLDRINAANPTPSLGEIEAT 276

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C E  L         CNLGSINL     +N  D++ L  T+  AV  LDNVID N + 
Sbjct: 277 NPCGEQPLLPYES----CNLGSINLAKMVKDNSVDWELLKDTVWKAVHFLDNVIDANKYP 332

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +++   +R IGLG+MG+   L  L IPY S EA+ +A+E M+FI      AS ELA
Sbjct: 333 LSLIEQNTKANRKIGLGVMGWADMLIQLKIPYNSKEALNLAEELMKFILHEGRLASKELA 392

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG + ++  S++                                       + +RN+ 
Sbjct: 393 KERGTFPNYAKSIYYD------------------------------------KMPLRNAT 416

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  I+P +   + ++ M G     VN +   E+++  +W +++ 
Sbjct: 417 ITTIAPTGTLSIIAGCSSGIEPLFALCFARNVMDGTRLVEVNPYFKKEMEKIGIWSDSL- 475

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
           +D     GSI  I+ IP+++KKI  TA E+ P   I   +  Q+++D A S  +   ++ 
Sbjct: 476 ADKIAETGSIQGIKEIPEEIKKIFVTAHEVSPSEHIRMQAAFQQYVDNAVSKTVNLPNQA 535

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS--ATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + + +  +Y  A+ +G K     R  S     ++K   +    +++  P   P +
Sbjct: 536 TEEDVREVYLLAYRLGCKGVTVYRDGSRHGQVIQKGKTESPALQISLKPRKRPET 590


>gi|227830253|ref|YP_002832033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|229579068|ref|YP_002837466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284997676|ref|YP_003419443.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
 gi|227456701|gb|ACP35388.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|228009782|gb|ACP45544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284445571|gb|ADB87073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
          Length = 838

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/833 (25%), Positives = 361/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T  I
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRAI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DF+          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K          +FY ++SS  F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQADR--------- 531
             D FM+ V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 532 -------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL           + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          +S+  +AEV D      +   +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGRVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRAIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|227827566|ref|YP_002829346.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238619723|ref|YP_002914549.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
 gi|227459362|gb|ACP38048.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238380793|gb|ACR41881.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
          Length = 838

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/834 (25%), Positives = 363/834 (43%), Gaps = 126/834 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T  I
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRAI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DF+          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K          +FY ++SS  F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQADR--------- 531
             D FM+ V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 532 -------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL           + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          +S+  +AEV D      +   +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    +EP  + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRFEEP-PETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGRVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRAIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|70607111|ref|YP_255981.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
 gi|68567759|gb|AAY80688.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
          Length = 837

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/851 (24%), Positives = 365/851 (42%), Gaps = 133/851 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  +G    F ++++   +      L +V    +L +  +N  +  +    L   +
Sbjct: 12  KIKVLKRNGGYEQFKAEKVFSKLGS----LPEVVMDGILQDVLQNSKENAIDTRALADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      + PN   +  R++L ++   V                              
Sbjct: 68  ERNLIEHSLEYPNLMDLAKRYVLARIYNHVYG---------------------------- 99

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAF 320
                       +FD           RD    Y  L++L  RY L    +   IE PQ  
Sbjct: 100 -------KGKWKEFD----------SRDLLISYNALKVLEARYLLKDPNTLRYIETPQMM 142

Query: 321 FMRVAMGLALKET---EKEKRAVEF----YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  +A  E    + EK+  E     Y ++S+  F+ +TP L NSGTR   LS+CF+
Sbjct: 143 FRRVARHIANVEKLYGKDEKQVKEIEDKLYEMMSNLKFIPNTPALMNSGTRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVRDAMSTPNGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDIVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ + +   V QGGKR+GA    +  WH DV++F+  +     D     + N +  + D 
Sbjct: 263 RIFDVSTDVVKQGGKRRGANMGVMHAWHADVQDFIRAKTGELRDT-HLQNFNISVGVYDY 321

Query: 489 FMKRVTQNAGWTLFSP--------DEVSDLHDLYGKEFEIAYENY-----ERQAD----- 530
           FM  V +     L +P        D    + +  G   + + + Y     E +       
Sbjct: 322 FMNAVERGEAVPLINPRKTRIPGKDWDYYMTNARGYMHDESVQEYILKELEEKGGSVYLD 381

Query: 531 --------------RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  + + ++A  L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESRIITVDEALVIAEKENAIVQWVNARQLFDEIVKGAWDSGDPGLLFIDEINRRHPVWYI 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSI+L             D+D L   I+  VR L
Sbjct: 442 GKINATNPCGEEPLLPWES----CNLGSISLEKFVVEKDGKMSIDWDGLVEAIKYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ +++    R +GLG+MG    L  L IPY S +A+ I+ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDALYISYQLAKFIYY 557

Query: 693 HAISASVELAQERGAYSSFKGSLWDQ--------GVF---------PIDSIGLLAEVRDE 735
           HA+  S++LA+E+G++ ++    +          G           P D +  L EV D 
Sbjct: 558 HALKTSIDLAKEKGSFPAYDPYYYHDIWESARDFGSLLEVSNIKDKPSDYVKKLTEVVD- 616

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                  RL +  LK+     G+RNS  +++APT TI+ I G S SI+P +   +V++  
Sbjct: 617 -------RLDFSLLKEERIKFGLRNSTVVSVAPTGTISIIAGTSSSIEPLFALAFVRNVA 669

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F  ++   +  L++ +L D  ++  +    G++     IP  +KK+  TA E+ P +
Sbjct: 670 VGKFIEIDPLFLEYLRKYELDDPEVVQKI-AETGTVAENPFIPRTMKKLFRTAHEVPPEY 728

Query: 856 LIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEK 913
            +   +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R RS    V  
Sbjct: 729 HVLHQAMWQQWNDSGTSKTINLKSEEPPETVEKVYMLAWKLGIKGVTVYRDRSKSQQVIY 788

Query: 914 STLKGVDGKLN 924
             +K    +  
Sbjct: 789 FGIKKEREEAE 799


>gi|291279559|ref|YP_003496394.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
 gi|290754261|dbj|BAI80638.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
          Length = 768

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/658 (27%), Positives = 306/658 (46%), Gaps = 87/658 (13%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
                 L +L  RY      G+ +E P+  F RVAM +AL +       + EK A EF++
Sbjct: 15  KLSANALTVLRKRYLKKDEKGNIVETPKGMFQRVAMNIALADLNYDKNADIEKTAKEFFD 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++ S  F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  +
Sbjct: 75  IMVSLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G + F+ V +     + QGG R+GA    L   H D+ EF+ 
Sbjct: 135 SRLRPKDDVVKTTKGVSSGPVSFMTVFDSATETIKQGGTRRGANMGILRVDHPDIMEFIY 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K    D+ +  + N +  + + FM+ V +   + L +P +                  
Sbjct: 195 AKK----DKTKLTNFNLSVAVTEKFMEAVIKGEDYPLINPKDGK---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V +K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N 
Sbjct: 235 -----------VVKKLNAKEVFDQMVKLAWEGGDPGIVFIDRINKDNPTPKEGEIESTNP 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     N +  +D+L   I TAV  LDNVID+N + I 
Sbjct: 284 CGEQPLLPYES----CNLGSINLGKFVKNKKILWDELKKVIHTAVHFLDNVIDMNNYPIP 339

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++    +R IGLG+MG+   + LL IPY S +A+++A++ M FI     +ASV+LA++
Sbjct: 340 QIEEMTKKNRKIGLGVMGWADMMALLEIPYNSEDALKLAEKVMSFIQEEGRNASVKLAEK 399

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG++ +FK S++ +  F +                                  +RN+   
Sbjct: 400 RGSFPNFKDSIYPEKGFKM----------------------------------LRNATVT 425

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I G S  I+P +   + ++ +  D    VN       K+   + + ++  
Sbjct: 426 TIAPTGTISIIAGASSGIEPYFAIAFYRNVLDNDKLVEVNPIFKEIAKREGFYSDELMEK 485

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSG 882
           +    G + +I+ +P+  K++  TA EI P+W ++  +  Q++ D A S  + + +E + 
Sbjct: 486 I-AESGHLEDIDEVPEKWKRVFVTAHEISPIWHVKMQAAFQRYTDNAVSKTVNFPNEATV 544

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVDGKLNAVPVTDPN 932
           + +  +Y  A+  G K     R  S         T  +K   + V+ +    P   P 
Sbjct: 545 EDVREVYLLAYKEGCKGITIYRDGSREGQVINVGTKDKKEETQTVEIRGQFRPRPRPK 602


>gi|220933052|ref|YP_002509960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
 gi|219994362|gb|ACL70965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
          Length = 766

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 304/636 (47%), Gaps = 84/636 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYN 344
           D       +++L  RY     +G  IE P+  F RVA  +A        + E+    F+N
Sbjct: 3   DIKLTRNAIKVLKARYLKRDASGELIETPEEMFKRVANNIASANEKYGEDPERDKEAFFN 62

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++S  F+ ++PTL N+     QLS+CF+  + D + GIF AL+  A++ K  GG G  +
Sbjct: 63  LMASLDFLPNSPTLMNADNDLQQLSACFVLPIEDSMDGIFDALKYTALIQKSGGGTGFSF 122

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G + G I F+++ +     V QGGKR+GA    L   H D+ EF+ 
Sbjct: 123 SRLRPKSDIVKTTGGVASGPISFMEIFDAATNTVKQGGKRRGANMGILRVDHPDIMEFIT 182

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D  R ++ N +  + D FM+ V ++  + L +P                    
Sbjct: 183 AKA----DENRLNNFNISVAVTDEFMEAVKKDEEYDLVNPRSG----------------- 221

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +V  ++ A  ++ K++ M  + G P I F D  N  +P  H+G + S+N 
Sbjct: 222 ----------QVVGQLRAREVFNKIVEMAHKNGEPGIIFIDEINRHNPTPHLGEIESTNP 271

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L         CNLGSINL     N     + D++KL +T+RTA R LDNVID+N 
Sbjct: 272 CGEQPLLPYE----ACNLGSINLSHMVKNEGDKPEVDFEKLENTVRTATRFLDNVIDMNR 327

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + +E+ K+  +++R IGLG+MG+   L  L IPY S  AV +A++ M+FI+  +   S +
Sbjct: 328 YPLEQIKEMVYSNRKIGLGVMGWSDLLIRLGIPYNSDRAVNLAEKVMKFINEISHDESHK 387

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A++RG++ + +GS++D+                                       MRN
Sbjct: 388 IARKRGSFPNIEGSIYDKS--------------------------------------MRN 409

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           +    IAPT +I+ I G S  I+P +   Y +  +      V+ +     ++R  + E +
Sbjct: 410 ATTTTIAPTGSISIIAGCSSGIEPLFAINYERHVLDDTLIEVHPYFEKIARERGFYSEEL 469

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDE 879
           ++ +    GSI  +  IP+D++KI  TA +I+P W I+  +  QKW+D A S  + +  E
Sbjct: 470 MAKV-AERGSIQGMSEIPEDVQKIFVTAHDIEPEWHIKMQAAFQKWVDNAVSKTVNFRHE 528

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + + +  +Y  A+ +  K     R  S +    +T
Sbjct: 529 ATKEDVARVYTLAYDLKCKGVTIYRDGSRSEQVLAT 564


>gi|229584769|ref|YP_002843271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
 gi|228019819|gb|ACP55226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
          Length = 838

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/833 (25%), Positives = 360/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T  I
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRAI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DF+          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K          +FY ++SS  F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQADR--------- 531
             D FM+ V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 532 -------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL           + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          +S+  +AEV D      +    
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTG 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTIVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIGDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGRVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRAIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|197247241|gb|AAI65359.1| Rrm1 protein [Danio rerio]
          Length = 509

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 186/528 (35%), Positives = 288/528 (54%), Gaps = 27/528 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYD 191
           + K+       + ++  DG        ++   +++ C GL    V    +  +  + +Y 
Sbjct: 1   YKKAGLKEFGTMHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYS 60

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G++  +L+T     + TL  K P+YA + AR  +  L +E         +K     M+ L
Sbjct: 61  GVTTVELDTLAAEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDL 112

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           Y             + ++ +  +D  L     L + + Y+RDF++ + G + L   Y L 
Sbjct: 113 YNYVNPLNSR---HSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLK 169

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQL
Sbjct: 170 INGKVAERPQHMLMRVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQL 226

Query: 369 SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  +  D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P 
Sbjct: 227 SSCFLLAMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPM 286

Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L+V N+TA  V+QG  KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIP
Sbjct: 287 LRVYNNTARYVDQGGNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIP 346

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  N  W+L  P++   L + +G+EFE  Y  YE++      +  R + A  LW
Sbjct: 347 DLFMKRVETNGDWSLMCPNDCPGLDECWGEEFEKLYAKYEQEG-----RAKRVVKAQQLW 401

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI 
Sbjct: 402 YAIIESQTETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIA 461

Query: 607 LLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           L  +      FD+ KLAS  +  V+ L+ +IDIN + ++   +S   H
Sbjct: 462 LNMYVTSERTFDFQKLASVTKVIVKNLNKIIDINYYPVKDGCRSRSLH 509


>gi|189425377|ref|YP_001952554.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           lovleyi SZ]
 gi|189421636|gb|ACD96034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter lovleyi SZ]
          Length = 745

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 181/663 (27%), Positives = 300/663 (45%), Gaps = 81/663 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYN 344
           A     L +L  RY      G  +E P   F RVA  +A  +       + +K A  FY 
Sbjct: 12  ALTPNALTVLEKRYLKRDTSGKPLETPADMFRRVAETIAEPDKKFDKKADVKKLADRFYE 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++ SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  +
Sbjct: 72  MIVSFDFLPNSPTLMNAGRELGQLSACFVLPVGDSIEEIFDAVKFTAMIHKSGGGTGFSF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G I F++V +     + QGG R+GA    L   H ++ +F+ 
Sbjct: 132 SRLRPANDLVKTTTGVSSGPISFMRVFDTATETIKQGGTRRGANMGILRVDHPNIMDFIM 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D++  ++ N +  + + FM+ V ++  + L +P + S +              
Sbjct: 192 CKA----DQKLFNNFNISVGLTEKFMEAVERDEEYDLLNPRDKSKMG------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                          ++A  ++++++   +E G P I F D  N  +P  HVG + S+N 
Sbjct: 235 --------------TLNARKVFQRIVNQAWENGEPGIIFLDRLNRDNPTPHVGEIESTNP 280

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL    +    D+ +L   I  AV  LDNVI+ N + ++
Sbjct: 281 CGEQPLLPYES----CNLGSINLGRFVSEGAIDWSRLKGVIHDAVHFLDNVIEANKYPLQ 336

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +     H++R IGLG+MG+   L LL IPY S EAV++  + M+FI+    +AS EL Q+
Sbjct: 337 QIHDMTHSNRKIGLGVMGWADMLILLGIPYNSDEAVKLGKKVMQFINDEGHAASRELGQK 396

Query: 705 RGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           RG++ +F GS +D+ G  P                                    RN+  
Sbjct: 397 RGSFPNFTGSTFDKKGALP-----------------------------------QRNATV 421

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI+ I   S  ++P +   YVK+ M G     VN       K+R  +   ++ 
Sbjct: 422 TTIAPTGTISMIANASSGVEPLFAISYVKNVMDGTKLVEVNPTFEQLAKERGFYSAELME 481

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPS 881
            +  H GS+ +++ +P D++++  TA +I P   I+  +  Q   D A S  + + +  +
Sbjct: 482 KIAEH-GSVHDLDEVPADVRRVFVTAHDITPEDHIQMQAAFQYHTDNAVSKTVNFPNTAT 540

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + ++ +Y  A+  G K     R  S      ST +  +    A   T+ +        P
Sbjct: 541 IEDVENVYMLAYKTGCKGVTIYRDGSRDEQVLSTTRKEEKAAVAAIGTEDDKHAIKRERP 600

Query: 942 SSC 944
            + 
Sbjct: 601 KAL 603


>gi|34419510|ref|NP_899523.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
 gi|34333191|gb|AAQ64346.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
          Length = 741

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/789 (26%), Positives = 334/789 (42%), Gaps = 84/789 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G    F   +L  ++ +AC     +    +L+     + DG++  D++ A I 
Sbjct: 1   MLVVKSSGITEEFEESKLMRVLSDACKNT-TIDPHQLLARVKAQLSDGMTSKDIQKAAIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +EP+Y  V AR  +  LR++V       P K           +   R     
Sbjct: 60  IAADSISVEEPDYQYVAARLAMYGLRKDVYGQFDPIPFK-----------QLIERNTAIE 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFF 321
           V    + E   D +L YL + +K+ERDF F Y G+    ++Y     G+    E PQ  +
Sbjct: 109 VYDSEILEKWSDSELEYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQYAY 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M +AM L  +E  ++ K  ++FYN +S+      TP +    T   Q SSC      D L
Sbjct: 169 MLIAMCLHQEEKYDRLKHVIDFYNAVSTQKLSLPTPIMAGVRTPTRQFSSCVKIESGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    +          G+G +   +R  G+ +     +  GVIPF K       + +Q
Sbjct: 229 RSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA       WH++VE+ L L+ N G +  R   ++ +  I  L M+R+  N   T
Sbjct: 289 GGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNNEYIT 348

Query: 501 LFSPDE----VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPDE    +   +    +EFE  Y   E      +    ++I A  L+         T
Sbjct: 349 LFSPDERHGALYGEYHTNPEEFERLYLELEADPKVRK----KRIKATELFSIFGQERSST 404

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----EETAVCNLGSINLLAHF 611
           G  +  F D  N +S   ++  +  SNLC EI L +       EE A+C L + NL A  
Sbjct: 405 GRIYPIFVDNLNAQS--PYIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYNLGAIE 462

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           + ++F     A      +R LDN++D   + +E A+K+ +  RA+G+G+  F   L    
Sbjct: 463 SPSEF-----ARLAPIVIRALDNLLDYQDYPVEAAEKAKYR-RALGIGITNFAYFLAKNF 516

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S  A  +  E ME +S++ I AS+ LA+ERGA    + + W +G  PID       
Sbjct: 517 VGYDS-SAKYLVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRWAKGQLPIDWYNKNV- 574

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +  +     L W+ L+  V   GMRN    A  P  + + I   +  I+P    +  
Sbjct: 575 ---DKLVKPNYNLDWEALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPPRGLVST 631

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G F  V   +                                D LK  +  A+++
Sbjct: 632 KQSKDGVFNQVVPEV--------------------------------DLLKDEYGLAWKV 659

Query: 852 ---DPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK-KLDFIYRQ-AW--LMGLKTTY 901
              D    +   +  QK++DQ+ S N Y D    P+GK  ++ I+ + A+    G+KT Y
Sbjct: 660 CEKDNFGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEELAFCSHYGIKTLY 719

Query: 902 YLRSRSATS 910
           Y  +R    
Sbjct: 720 YSNTRDGAD 728


>gi|322418582|ref|YP_004197805.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320124969|gb|ADW12529.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 745

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 179/658 (27%), Positives = 302/658 (45%), Gaps = 79/658 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSS 348
             L +L  RY      G  +E     F RVA  +A  ++  +K+A       +FYN++++
Sbjct: 16  NALTVLEKRYLKRDQTGKTLETAADMFRRVATAIAQADSVFDKKADISALSDKFYNMMTN 75

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R
Sbjct: 76  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLR 135

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +  
Sbjct: 136 PANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK-- 193

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             +D+R+ ++ N +  I + FMK V  +  + L +P +                      
Sbjct: 194 --NDQRQLNNFNISVGITEEFMKAVDADKDYNLVNPRDKKQAG----------------- 234

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ++A  ++ +++   +E G P I F D  N  +P  H+G + S+N C E 
Sbjct: 235 ----------TLNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQ 284

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     + + D+DKL   ++TAV  LDNVI++N + +E+  +
Sbjct: 285 PLLPYES----CNLGSINLGKMVVHGKVDWDKLKEVVQTAVHFLDNVIEVNNYPLEQIDQ 340

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
              ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+     AS +LA+ RGA+
Sbjct: 341 MTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGKIASRKLAKSRGAF 400

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +FKGS++D                                        +RN+    IAP
Sbjct: 401 PNFKGSIYDAPG----------------------------------ADPIRNATVTTIAP 426

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  ++P +   +V+  M  +    VN       K +  + E ++  +  H
Sbjct: 427 TGTISIIANASSGVEPLFAVSFVRQVMDKNILVEVNPLFEKIAKDQGFYSEELMQRIAEH 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            G++ +I  IP+ ++ +  TA +I P   I   +  Q+  D A S  +    E + + ++
Sbjct: 487 -GTVQDISAIPEGVRDVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPREATIEDVE 545

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            +YR A+    K     R  S      S  K  + K+ A PV            P + 
Sbjct: 546 KVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKIAAPPVHIEEKRGAKRERPKAL 603


>gi|215275535|sp|P0C8H7|RIR1_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 779

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/786 (27%), Positives = 364/786 (46%), Gaps = 76/786 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  +  L +   ++  +            L P++    
Sbjct: 36  QELISYCSALTILHYDYSTLAARLSVYLLHQSTASSFSEAVSLQAAQSCSRLSPQFV--- 92

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
                   ++++    FD     + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 93  -------DVVYKYKAIFD-----SYIDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQ 140

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   +      K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 141 DAYMRVAIMIYGMGRVVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 200

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 201 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCY 260

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +  G   + R    ++    W+PDLFM+ + 
Sbjct: 261 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 320

Query: 495 Q------NAGWTLFSPDEVSDLHDLYG----------KEFEIAYENYERQADRGEIKVFR 538
                  +  W LFSPD+  +LH ++           +EF   Y  Y  +     +   +
Sbjct: 321 DQIHDRGDGTWYLFSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAK 380

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
           +I     ++ ++ +    G+P+I FKD  N +S   HVG + +SNLC EIT+        
Sbjct: 381 EI-IKEWFKTVIQV----GNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEA 435

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 436 EQGVCNLAAVNLAAFIRENSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRP 495

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G         + + SPEA+ + +     + + A+  SVELA+E+G++ SF GS 
Sbjct: 496 IGIGVFGLADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPGSA 555

Query: 716 WDQGVFPIDSIGL-------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +G+   D             E   +      +   W +L+      G+RN    A+ P
Sbjct: 556 ASKGLLQPDLWVRCDDLVFSWEERVAQTTQGVLTPKKWWQLRLAAMQ-GVRNGYLTALMP 614

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TAT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    
Sbjct: 615 TATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAG 674

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
           GSI +I  IP ++++ + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +
Sbjct: 675 GSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTV 734

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               W  GL T +YY         +K  ++  +   +A                      
Sbjct: 735 LVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACSA---------------------- 772

Query: 948 TECEVC 953
            +CE C
Sbjct: 773 -DCEAC 777


>gi|27882097|gb|AAH44356.1| Rrm1 protein [Danio rerio]
          Length = 498

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 185/517 (35%), Positives = 285/517 (55%), Gaps = 27/517 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSR- 111

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
              + ++ +  +D  L     L + + Y+RDF++ + G + L   Y L ING   E PQ 
Sbjct: 112 --HSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P++   L + +G+EFE  Y  YE++      +  R + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNDCPGLDECWGEEFEKLYAKYEQEG-----RAKRVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI L  +      F
Sbjct: 402 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTF 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           D+ KLAS  +  V+ L+ +IDIN + ++   +S   H
Sbjct: 462 DFQKLASVTKVIVKNLNKIIDINYYPVKDGCRSRSLH 498


>gi|229582181|ref|YP_002840580.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
 gi|228012897|gb|ACP48658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
          Length = 838

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/833 (25%), Positives = 360/833 (43%), Gaps = 124/833 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +              V      ++   + ++ ++T  I
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSS--------VPDEVTDGIVNDVQANVKDNAIDTRAI 63

Query: 204 --FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                R LIE    Y  +     R++L ++   V                          
Sbjct: 64  ADIVERNLIENSLKYPFLMELAKRYVLARIYNHVFG------------------------ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEM 316
                           DF+          E+D    Y  L++L  RY L    +   IE 
Sbjct: 100 -----------KGKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIET 138

Query: 317 PQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           PQ  F RVA  LA  E +  K          +FY ++SS  F+ ++PTL NS TR   LS
Sbjct: 139 PQMLFRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILS 198

Query: 370 SCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G 
Sbjct: 199 ACFVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGP 258

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D +   + N +  
Sbjct: 259 VSFMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDVQ-LQNFNISVG 317

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA----YENYERQADR--------- 531
             D FM+ V +     L +P +       +      A     E + ++            
Sbjct: 318 AYDYFMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGV 377

Query: 532 -------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                               E  V R ++A +L+ +++   +++G P + F D  N R P
Sbjct: 378 VSLDESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHP 437

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTA 628
             ++G ++++N C E  L         CNLGSINL           + D+D LA  I   
Sbjct: 438 VWYLGKINATNPCGEEPLLPWES----CNLGSINLEKFIIERNGKVEIDWDGLAEIISYG 493

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +
Sbjct: 494 VRFLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAK 553

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRD------ELAMN 739
           FI +HA  AS+E+A+E+G + ++   L+          +S+  +AEV D      +   +
Sbjct: 554 FIFYHAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTS 613

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F
Sbjct: 614 VVDKLDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKF 673

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             ++   +  L++ +L D  +I  +    G I +   +P  L+K+  TA E+ P++ +  
Sbjct: 674 IEIDPLFLEYLRKYELDDPEVIQKI-AESGIIDDNVFMPRSLRKLFRTAHEVPPIYHVLH 732

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q+W D   S  +    E   + ++ +Y  AW +G+K     R +S    
Sbjct: 733 QAAWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQQ 785



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   ++ ++VIKR+G V  F   KI                    ++  +   +T+  V 
Sbjct: 6   YSTSLRKIKVIKRDGRVDEFKLEKILS------------------KLSSVPDEVTDGIVN 47

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
            + Q N     +    I D VE +L+++        ++ + YVL
Sbjct: 48  DV-QANVKDNAIDTRAIADIVERNLIENSLKYPFLMELAKRYVL 90


>gi|39996969|ref|NP_952920.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|39983857|gb|AAR35247.1| ribonucleoside-diphosphate reductase, putative [Geobacter
           sulfurreducens PCA]
 gi|298505986|gb|ADI84709.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sulfurreducens KN400]
          Length = 743

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/650 (27%), Positives = 300/650 (46%), Gaps = 81/650 (12%)

Query: 296 LGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNLLSS 348
             + +L  RY     G   +E P   F RVA  +A  +   +K       A +FY L++S
Sbjct: 17  NAVTVLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTS 76

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R
Sbjct: 77  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFSRLR 136

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  +  
Sbjct: 137 PAHDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK-- 194

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             DD++  ++ N +  + + FM+ V ++A + L +P +                      
Sbjct: 195 --DDQKHLNNFNISVGLTEAFMEAVERDADYDLINPRDGK-------------------- 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ++A  ++ +++   ++ G P I F D  N  +P  HVGV+ S+N C E 
Sbjct: 233 -------PCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPCGEQ 285

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     N   ++D+L   +R AV  LDNVI++N + + +  +
Sbjct: 286 PLLPYES----CNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISE 341

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MG+   L LL IPY SP+A+ + ++ M FI+      S ELA  RG++
Sbjct: 342 MTRANRKIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSF 401

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS++D+                                       +RN+    IAP
Sbjct: 402 PNFAGSIYDRAS----------------------------------EGPIRNATVTTIAP 427

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  ++P +   +++  +  +    VN       +QR  + E ++  +  H
Sbjct: 428 TGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEVARQRGFYSEELMQKIARH 487

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            G+I ++  IP+D++KI  TA +I P   IE  +  QK+ D A S  + + +  + + ++
Sbjct: 488 -GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNSAAIEDVE 546

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +YR A+  G K     R  S      ST  GV      V  T+   +  
Sbjct: 547 KVYRLAYKSGCKGVTIYRDGSRDEQVLST--GVKEDKEKVVQTEEKRAVK 594


>gi|206900775|ref|YP_002251097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
 gi|206739878|gb|ACI18936.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
          Length = 751

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 179/639 (28%), Positives = 287/639 (44%), Gaps = 83/639 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVE 341
           R        L IL  RY      G+ IE P+  F RVA  +A  +       + E     
Sbjct: 2   RKVELTEQALMILEKRYLKKDEKGNVIETPEEMFERVAETIAKVDLIYNPKADLEAIKNT 61

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+++ S  F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G
Sbjct: 62  FYDMMVSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTG 121

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  T G + G + F+KV +     + QGG R+GA    L   H D+EE
Sbjct: 122 FSFSKLRPKGDIVKTTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRIDHPDIEE 181

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +   G       + N +  I D FM+ V ++  + L +P                 
Sbjct: 182 FITCKDQEGV----LSNFNISVAITDSFMEAVLKDEDFPLINP----------------- 220

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V RK+ A  L+  ++   ++ G P + F D  N ++P   VG + S
Sbjct: 221 ----------RNKEVVRKVKARDLFDLIVKQAWKNGEPGVVFIDEINRKNPTPEVGEIES 270

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           + D+DKL  T+  AV  LDNVID
Sbjct: 271 TNPCGEQPLLPFES----CNLGSINLGKMLKRVGEKYEIDWDKLKITVHNAVHFLDNVID 326

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + ++  ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  A
Sbjct: 327 ANFYPLKPIEEMTKANRKIGLGVMGFYDLLVRLEVPYNTKEARDIAENIMSFIQREASEA 386

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+ERG + ++  S++                                         
Sbjct: 387 SQKLAEERGVFPNWDKSIYKDMGLK----------------------------------- 411

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN+    IAPT +I+ I   S  I+P +   + +    G++  V       L + D++ 
Sbjct: 412 LRNATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKEDIYS 471

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E +I  +   +G+I +++ IP+ LK++  TA +IDP   +   +  QK++D A S  + L
Sbjct: 472 EDLIEKIV-QEGTIQHMDEIPERLKRLFVTALDIDPEDHVLMQAAFQKYVDNAVSKTVNL 530

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            E  + + +  +Y  A+ + LK     R +S  S   S 
Sbjct: 531 RESATLEDIRRVYLMAYDLKLKGITVYRDKSRASQVLSV 569


>gi|253701670|ref|YP_003022859.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sp.
           M21]
 gi|251776520|gb|ACT19101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M21]
          Length = 744

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 184/659 (27%), Positives = 307/659 (46%), Gaps = 82/659 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSS 348
             L +L  RY      G  +E     F RVA  +A  +   +K+A       +FY ++++
Sbjct: 16  NALTVLEKRYLKRDQTGKPLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYTMMTN 75

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R
Sbjct: 76  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLR 135

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +  
Sbjct: 136 PANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCK-- 193

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+R+ ++ N +  I + FMK V  +  +TLF+P +                      
Sbjct: 194 --SDQRQLNNFNISVGITEAFMKAVDADEEYTLFNPRD---------------------- 229

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +   K +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C E 
Sbjct: 230 -----KQPAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQ 284

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++  +
Sbjct: 285 PLLPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDE 340

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
              ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ RGA+
Sbjct: 341 MTRSNRKIGLGVMGWADMLIMLGIPYGSAESVELGEKVMQFINDEGHAASRQLAKTRGAF 400

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            +FKGS++D+ G  PI                                   RN+    IA
Sbjct: 401 PNFKGSVYDKPGAEPI-----------------------------------RNATVTTIA 425

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I   S  ++P +   YV+  M  +    VN       K    + + ++  +  
Sbjct: 426 PTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAE 485

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
           H G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  +    E + + +
Sbjct: 486 H-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDV 544

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           + +YR A+    K     R  S      S  K  + K  A PV   +  T     P + 
Sbjct: 545 EKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAK-AAAPVHVEDKRTAKRERPKAL 602


>gi|320538994|ref|ZP_08038669.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
 gi|320030927|gb|EFW12931.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
          Length = 656

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 174/689 (25%), Positives = 280/689 (40%), Gaps = 71/689 (10%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIE 315
           R +E G   +LL E     +   +   + + RD  F Y  ++ L  +Y +   ++G   E
Sbjct: 2   RMVEMGKYDKLLLEDYSAEEFEQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYE 61

Query: 316 MPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
             Q  ++ VA  L      + +      FYN +S+F     TP +    T   Q SSC L
Sbjct: 62  SAQFLYILVAACLFSNYPRETRLDYVKRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVL 121

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 122 IECGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 181

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+
Sbjct: 182 AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRL 241

Query: 494 TQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+  +     EFE  Y  YE+     +    +++ AV L+  M+
Sbjct: 242 IKGQDITLFSPSDVPGLYAAFFADQDEFERLYTEYEQDDSIRQ----KRVKAVELFSLMM 297

Query: 551 TMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCN 601
                TG  +I   D CN  SP    +  V  SNLC EI         +N  + E A+C 
Sbjct: 298 QERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCT 357

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L + NL         + D L      AVR LD ++D   + I+ A +     R +G+G++
Sbjct: 358 LSAFNLGTI-----DNLDDLEELATLAVRSLDALLDYQDYPIKAAHRGAMGRRTLGVGVI 412

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            F   L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ 
Sbjct: 413 NFAHYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETSYSQGIL 472

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           PID+     +V      N      W+ L++ ++  G+ NS   A+ P+ T + I   +  
Sbjct: 473 PIDTYKKDLDV----ICNEPLHYDWETLRQEIQETGLSNSTLSALMPSETSSQISNATNG 528

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P   ++ +K++  G    V                                    + L
Sbjct: 529 IEPPRGHISIKASKDGILRQVVPEY--------------------------------ECL 556

Query: 842 KKIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYRQA 892
           K  +   +E+ +    ++     QK+IDQ+ S N   D P+         K+L      A
Sbjct: 557 KNDYELLWEMPNNEGYLQLVGLMQKFIDQSISANTNYD-PTRFPGGKVPMKQLLKDLLTA 615

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           +  G+KT YY  +R      +  L     
Sbjct: 616 YKFGVKTLYYQNTRDGAEDIQGDLHPAKA 644


>gi|153801926|ref|ZP_01956512.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
 gi|124122571|gb|EAY41314.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
          Length = 670

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 174/709 (24%), Positives = 284/709 (40%), Gaps = 69/709 (9%)

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           KA           +  + +E+G   + L E     +L  +   + + RD  F Y  ++ L
Sbjct: 1   KAYGQYEPPTLLAHVTKMVEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQL 60

Query: 302 YDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
             +YF+   + G   E  Q  ++ VA  L  K  ++ +      FY+  S+F     TP 
Sbjct: 61  EGKYFVQNRVTGQIYESAQFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPI 120

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +    T   Q SSC L    D L  I               G+G +   +R LG+ I G 
Sbjct: 121 MSGVRTPTRQFSSCVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGG 180

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                G IPF K         +QGG R GA   +   WH + E  L L+ N G +  R  
Sbjct: 181 EAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVR 240

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEI 534
            M+    +  L  KR+ +    TLFSP +V  L+D +     EFE  Y  YE        
Sbjct: 241 HMDYGVQLNKLMYKRLVEGGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI--- 297

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSS 593
              + + A+ ++  ++     TG  +I   D CN  SP    V  V  SNLC EI L +S
Sbjct: 298 -KKKTVKALEIFTLLMQERASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTS 356

Query: 594 S--------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                     E A+C L + NL A  +      D         VR LD ++D   + +  
Sbjct: 357 PLANVEDESGEIALCTLSAFNLGAIES-----LDDFEELSDLVVRALDALLDYQDYPLPA 411

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A++S+   R +G+G++ +   L    + Y+   A  +   + E + +H + AS++LA+E+
Sbjct: 412 ARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQ 471

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G    F  + + +G+ PID+         +L         WD+L+  +   G+RNS   A
Sbjct: 472 GRCPLFHETNYAKGLMPIDTYKKDI----DLVCAEPLHYDWDKLRHEIMEHGLRNSTLTA 527

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T + I   +  I+P    + VK++  G    V        +     +  ++ ++ 
Sbjct: 528 LMPSETSSQISNATNGIEPPRGYVSVKASKDGILKQVVPEFTRLKE-----NYELLWNIG 582

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS---- 881
            +DG                           +      QK++DQA S N   D  +    
Sbjct: 583 SNDG--------------------------YLHLVGIMQKFVDQAISANTNYDPSNFDSG 616

Query: 882 ---GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNA 925
               KKL      A+  G+KT YY  +R     E++  T+K  +    +
Sbjct: 617 KVPMKKLLQDLLTAYKFGVKTLYYHNTRDGAKDEQTDATVKVQEDDCAS 665


>gi|311993226|ref|YP_004010092.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
 gi|284178064|gb|ADB81730.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
          Length = 751

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 184/796 (23%), Positives = 323/796 (40%), Gaps = 70/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   GT   F  ++L  ++E  C   + V    +      ++ DG++  D++ A   
Sbjct: 1   MKVIKSSGTSQEFTPEKLIKVLEWGCENTR-VDPYELYQAIVPHLQDGMTTYDIQRAATK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            + ++I  +EP+Y  V +   +  LR++V      +            + +     +   
Sbjct: 60  VAASMISIEEPDYQYVASNLAMFNLRKQVYGQFEPRS-----------FIDQISFGVNHN 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
              + +       ++  L + + ++RDF   Y G   L ++Y +     G  IE PQ  F
Sbjct: 109 KYDKEVLAKWSAEEIALLESKIVHDRDFEMTYAGTMQLIEKYLVKDRSTGQIIETPQFAF 168

Query: 322 MRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   + E      + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MLIGMTLHQDDGENRLVNTIRFYDAVSTKKISLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  + +          G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKSAESIVEYISKRAGIGINAGMIRAEGSKIGFGEVKHTGVIPFWKHIQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE  L L+ N G D  R   ++    I DL  +R+ ++   T
Sbjct: 289 GGVRGGAATLYYPIWHLEVENLLVLKNNKGVDENRIRHLDYGVQINDLMFERLIKDDYIT 348

Query: 501 LFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSPD +   L++ Y K+     E YE      +++  +++ A  L    LT    T   
Sbjct: 349 LFSPDIDAGRLYENYFKDAAAFREQYEALEKNPDVRK-KRVKARELIELFLTERSGTARI 407

Query: 560 WITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFAN 613
           +  F D      P  + V  +  SNLC EI L +        E A+C L +  L      
Sbjct: 408 YPYFVDNVGDYGPFIRDVATIKQSNLCAEIALPTKDVYSEDAEIALCTLSAFVLGNF--- 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D + +       VR LDN++    + +++A K     RA+G+G+  + + L      
Sbjct: 465 DWQDQETINELAEVQVRALDNLLSYQGYPVKEALK-ALKRRALGVGVTNYAAWLADNFAT 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YA   A ++  E  E + +  I AS++LA+E+G    +K + W +G  PID      +  
Sbjct: 524 YAD--ANDLTHELFERLQYALIKASIKLAKEKGPCEYYKDTRWSRGELPIDWYN---KRI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D+LA        W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQLAAPNYV-CDWEALRAELKQYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V   +             + +DL  +   +      P               
Sbjct: 638 SKEGSFNQVVPNV------------ELNADLYDYAWKLAKQGNKP--------------- 670

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSR 906
              +   +   KW+ Q+ S N Y D  + +K       +       W  G KT YY  +R
Sbjct: 671 --YLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMMDDLLYFWYFGGKTLYYHNTR 728

Query: 907 SATSVEKSTLKGVDGK 922
             +  +   ++    +
Sbjct: 729 DGSGNDDFEIEKPKAE 744


>gi|95930217|ref|ZP_01312955.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133680|gb|EAT15341.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 738

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 182/651 (27%), Positives = 303/651 (46%), Gaps = 80/651 (12%)

Query: 293 FEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKETEKEKRA------VEFYNL 345
                L +L  RY       R +E P   F RVA  +A  E + +K+A       EFY++
Sbjct: 12  LTNNALTVLERRYLKRDEKGRALETPANMFERVANAIAEAEKKFDKKADTKKVAAEFYDM 71

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 72  ITNLEFLPNSPTLMNAGRELGQLSACFVLPVADSMESIFEAIKNTALIHKSGGGTGFSFS 131

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F+KV +     + QGG R+GA    L   H D+ +F+  
Sbjct: 132 RIRPANDVVLSTKGVSSGPLSFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++    D+    + N +  + + FM+ V  +  + + +P                     
Sbjct: 192 KR----DQTVLTNFNISVGLTEEFMEAVKTDGEYDIINPRTGE----------------- 230

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V  K+SA  ++  ++ + +  G P I F D  N  +P  H+G + S+N C
Sbjct: 231 ----------VCDKMSAAKVFDHIVDLAWNNGEPGIIFLDRLNRDNPTPHIGEIESTNPC 280

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + Q D+DKL  T++ +VR LDNVI++N + I +
Sbjct: 281 GEQPLLPYES----CNLGSINLNRMVKDGQVDWDKLRKTVQKSVRFLDNVIEVNNYPIPE 336

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + +  +R IGLG+MG+   L  + I Y   EA E+A + M+FI+  A  AS +LA+ER
Sbjct: 337 ITEMSLANRKIGLGIMGWADMLIRVGISYCDQEAAELAAKLMKFINDEAHQASRDLAKER 396

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+ +F+GS+++Q   P                                   +RN+ C  
Sbjct: 397 GAFPNFEGSIFEQRQEPK----------------------------------IRNATCTT 422

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  I+P +   YV+  M  D    VN       K+R  +   ++  L
Sbjct: 423 IAPTGTISIIANSSSGIEPLFAVSYVRQVMDNDILVEVNPLFEEVAKERGFYSPELM-KL 481

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGK 883
               G+I + ++IP+D++++  TA +I P   I   S  QK+ D A S  + + +  +  
Sbjct: 482 IAEKGTIQDFDQIPEDVRRVFVTAHDITPEEHIRMQSAFQKYTDNAVSKTVNFCNSANRD 541

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            +  +Y+ A+  G K     R  S    +  ++K  +   + VP+    ++
Sbjct: 542 DVAQVYQMAYESGCKGVTIYRDGSR-DAQVLSVKKEEKNESTVPMESKKAT 591


>gi|288931372|ref|YP_003435432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
 gi|288893620|gb|ADC65157.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
          Length = 756

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 178/619 (28%), Positives = 289/619 (46%), Gaps = 81/619 (13%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCS 354
           +L  RY L  + G+ IE P+    RVA  +A  E     + +  A +F+ ++    FM +
Sbjct: 10  VLKKRYLLKDDKGNVIETPEQMLWRVANAIAEAEEKYGNDPDYWAKKFFEIMDRQEFMPN 69

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++ +R  G  +
Sbjct: 70  SPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFSRIRPKGDIV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  +   G    
Sbjct: 130 KSTKGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLSVHHPDIEEFITAKWEEGV--- 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  + D FM+ +  +  + L +P                              
Sbjct: 187 -LRNFNISVAVTDKFMEALKNDEDYELINPRTGE-------------------------- 219

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V +K+SA  ++  ++   +  G P + F D  N  +P  HVG++ ++N C E  L    
Sbjct: 220 -VVKKVSARKIFNLIVEGAWRNGEPGLIFIDEINRHNPTPHVGMIEATNPCGEQPLLPYE 278

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                CNLGSINL          F++++L   +  A R LDNVID+N + I + +K    
Sbjct: 279 S----CNLGSINLSKFVNEKEGDFEWERLREVVHIATRFLDNVIDVNSYPIPEIEKMTKG 334

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IGLG+MG+  AL  L IPY S EAV +A++ M+FI   +  AS  LA+ERG + ++K
Sbjct: 335 NRKIGLGVMGWADALFKLKIPYDSEEAVALAEKVMKFIQEESHKASQMLAEERGVFPNWK 394

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS+W++                                   + I MRN+    IAPT TI
Sbjct: 395 GSVWEK-----------------------------------RGIKMRNATTTTIAPTGTI 419

Query: 773 ANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + I G S  I+P +   Y ++N+    +F  +N      LK+  L+ E +I  +   +GS
Sbjct: 420 SIIAGCSSGIEPVFALAYKRTNILDGEEFFEINPIFERTLKEIGLYREDIIERV-AEEGS 478

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIY 889
           I  I  IP+ ++++   A +I   W +   +  QK+ D A S  +   +  +   ++  +
Sbjct: 479 IQRIGEIPEAVRRVFKCALDIPAEWHVRMQAAFQKYTDNAVSKTINLPNHATKADVEKAF 538

Query: 890 RQAWLMGLKTTYYLRSRSA 908
             A+ +  K     R  S 
Sbjct: 539 LLAYELKCKGITVYRDGSR 557


>gi|197117589|ref|YP_002138016.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197086949|gb|ACH38220.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter bemidjiensis Bem]
          Length = 744

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/659 (27%), Positives = 308/659 (46%), Gaps = 82/659 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLLSS 348
             L +L  RY      G  +E     F RVA  +A  +   +K+A       +FYN++++
Sbjct: 16  NALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNMMTN 75

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++ +R
Sbjct: 76  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFSRLR 135

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +  
Sbjct: 136 PANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMCKA- 194

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+R+ ++ N +  I + FMK V  +  +TL++P +                      
Sbjct: 195 ---DQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRD---------------------- 229

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +   K +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C E 
Sbjct: 230 -----KQPAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQ 284

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++  +
Sbjct: 285 PLLPYES----CNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQIDE 340

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
              ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ RGA+
Sbjct: 341 MTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTRGAF 400

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            +FKGS++D+ G  PI                                   RN+    IA
Sbjct: 401 PNFKGSVYDKLGAEPI-----------------------------------RNATVTTIA 425

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+ I   S  ++P +   YV+  M  +    VN       K    + + ++  +  
Sbjct: 426 PTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRIAE 485

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
           H G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  +    E + + +
Sbjct: 486 H-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIEDV 544

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           + +YR A+    K     R  S      S  K  + K  A PV   +  T     P + 
Sbjct: 545 EKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEVK-AAAPVHVEDKRTGKRERPKAL 602


>gi|302390649|ref|YP_003826470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
 gi|302201277|gb|ADL08847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
          Length = 772

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 188/675 (27%), Positives = 307/675 (45%), Gaps = 83/675 (12%)

Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEF 342
            +          +L  RY      G  +E P+    RVA  +A  E     + E  A +F
Sbjct: 3   NKKLRLTENARVVLQKRYLAKDEKGQVVETPEDMIERVARAVAAAEENYGQDPEFWAEKF 62

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y++++   FM ++PTL N+G    QLS+CF+  V D + GIFGA++  A++ K  GG G 
Sbjct: 63  YDMMAELKFMPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFGAIKNAALIHKSGGGTGM 122

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  GA +  T G++ G + F+KV N    AV QGG+R+GA    L   H D+ EF
Sbjct: 123 SFSRLRPKGATVRSTGGEASGPVSFMKVFNAATEAVKQGGRRRGANMGILRVDHPDILEF 182

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +    +D     + N +  I D FM+ +  +  + L  P+                 
Sbjct: 183 IRCK----EDNNELTNFNISVAITDKFMETLKNDGTYELVDPNTGK-------------- 224

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                        V  ++ A  ++  ++ M ++ G P I F D  N ++P  H+G + S+
Sbjct: 225 -------------VTGRLKAREVFDLIVDMAWKNGEPGILFIDRVNAKNPTPHIGQIEST 271

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDI 638
           N C E  L         CNLGSINL          N+ DY++L   +  AVR LD+VID+
Sbjct: 272 NPCGEQPLLPFES----CNLGSINLSKFVKEGSTGNEIDYEELKQVVHMAVRFLDDVIDV 327

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + + ++    +R IGLG+MGF   L  L IPY S EAV++A+E M FI   A  AS
Sbjct: 328 NKYPLPEIEQMTKANRKIGLGVMGFADMLIKLGIPYDSEEAVKLAEEVMGFIQREARKAS 387

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+ RGA+ +F GS++D    P+                                  +
Sbjct: 388 EDLAKTRGAFPNFPGSVYDVPGGPL----------------------------------L 413

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWD 817
           RN+    IAPT TI+ I G S  I+P +   + ++ +       +      E+++R L+ 
Sbjct: 414 RNATVTTIAPTGTISIIAGCSSGIEPVFALAFERNVLDKQRLIEIYPLFEEEMRRRGLYS 473

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-Y 876
             ++ ++    GS+  I  IP+++K++  TA +I P W +   +  QK+ D A S  + +
Sbjct: 474 PELMEEV-LEKGSLKGIAGIPEEVKRVFVTAHDISPEWHVRIQAAFQKYTDNAVSKTVNF 532

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKGVDGKLNAVPVTDPNSS 934
               + + +  +Y  A+ +G K     R  S     ++K T +G +         +    
Sbjct: 533 PHSATREDVKKVYLLAYELGCKGVTVYRDGSREEQVLKKGTRQGQEAGAGTCGCEELPKE 592

Query: 935 THSLGIPSSCTSDTE 949
                 PS     TE
Sbjct: 593 IKPRPRPSVTYGSTE 607


>gi|77919448|ref|YP_357263.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545531|gb|ABA89093.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 744

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 183/660 (27%), Positives = 296/660 (44%), Gaps = 80/660 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSS 348
             L +L  RY     +G  +E P   F RVA  +A  ET      +    A  FY+ ++ 
Sbjct: 14  NALTVLKRRYLKRDQDGRILEDPADMFRRVADAVADAETRLASGQDATSLADRFYDAMTC 73

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R
Sbjct: 74  LEFLPNSPTLMNAGRELGQLSACFVLPVDDSMESIFEAIKQTALIHKSGGGTGFSFSRIR 133

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G I F+KV +     + QGG R+GA    L   H D+ +F+ ++K 
Sbjct: 134 PANDVVLSTKGVSSGPISFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMVKK- 192

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D     + N +  + + FMK V +   + L +P     L                  
Sbjct: 193 ---DLTVLTNFNLSVGLTEAFMKAVEEGQEYDLLNPRTGEPL------------------ 231

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                    +K+ A  ++ +++ M + +G P I F D  N  +P  HVG + ++N C E 
Sbjct: 232 ---------KKLDARKVFDRIIDMAWTSGEPGIIFLDRLNRDNPTPHVGEIEATNPCGEQ 282

Query: 589 TLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
            L         CNLGSINL      + + D++KL  T++  VR LDNVI+IN + + +  
Sbjct: 283 PLLPYES----CNLGSINLSRMVTGDGEVDWEKLRDTVQLGVRFLDNVIEINRYPLPQIS 338

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +   ++R IGLG+MG+   L LL +PY S +A+ +AD+ M FI+  A + SV+LA++RGA
Sbjct: 339 EMTLSNRKIGLGIMGWADMLILLGLPYNSSQAIALADKLMNFITTEARATSVKLAEQRGA 398

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAI 766
           + +F GS +DQ                                      G +RN+ C  I
Sbjct: 399 FPNFPGSSYDQ-----------------------------------AGDGPLRNATCTTI 423

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT TI+ I   S  ++P +   Y++  M  D  V    L   +  ++ +    +     
Sbjct: 424 APTGTISIIANTSSGVEPIFAVSYIRQVMDNDVLVEVHPLFEAIAHKEGFYSPELMKAIA 483

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
             G+I   + IP+ ++K+  TA +I P   I   +  QK  D A S  + +    + +++
Sbjct: 484 EKGTIQGFDEIPEKVRKLFVTAHDITPEDHIHMQAAFQKHTDNAVSKTVNFPHSATREEV 543

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             +YR A+  G K     R  S      S  K  +         +   S H    P + T
Sbjct: 544 AEVYRLAYKEGCKGVTIYRDGSRDMQVLSVAKAEEKPEEPAIPVESGKSGHKRERPRALT 603


>gi|222081802|ref|YP_002541167.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           radiobacter K84]
 gi|221726481|gb|ACM29570.1| ribonucleoside-diphosphate reductase, alpha subunit [Agrobacterium
           radiobacter K84]
          Length = 717

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 194/756 (25%), Positives = 320/756 (42%), Gaps = 86/756 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQC 250
           +E+ L+   + +   L +++        +  L++ R   ++       +     HH    
Sbjct: 13  TETQLDYHALNAMLNLYDED-------GKIQLDRDRLAAKQYFLQHVNQNTVFFHH---- 61

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI 309
              E     + EG   R + +    F+ V    D  Y + F F  +LG    Y  Y L  
Sbjct: 62  -LREKLDYLVTEGYYEREVLD-QYSFNFVRDLFDHAYAKKFRFPTFLGAFKYYTSYTLKT 119

Query: 310 -NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHP 366
            +G R  E  +     VA+ LA      E  A +  + + S  F  +TPT  N+G  +  
Sbjct: 120 FDGKRYLERYEDRICMVALTLAQG---NESLARDMVDEIISGRFQPATPTFLNAGKKQRG 176

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP
Sbjct: 177 ELVSCFLMRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIP 236

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +P
Sbjct: 237 VMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVP 296

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D+  +    N    LFSP +V  ++ +   E  +  E Y        I+  +KI A   +
Sbjct: 297 DITFELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVADNHIRK-KKIKARDFF 354

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594
           + +  + FE+G+P+I F+D  N  +     G +  SNLC+EI                  
Sbjct: 355 QVIAEIQFESGYPYIMFEDTVNRAN--PIAGRITMSNLCSEILQVSEASTYRDDLSYEHM 412

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTH 653
            +   CNLGS+N+ A       D D    TI TA+R L  V D++   ++   +K N   
Sbjct: 413 GKDISCNLGSLNIAA-----AMDSDNFGKTIETAIRALTAVSDMSRISSVPSIEKGNDES 467

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L    I Y S E V+  +     +++HAI AS  LA ER  ++  F+
Sbjct: 468 HAIGLGQMNLHGYLARERILYGSEEGVDFTNIYFYTVTYHAIRASNRLAAERERSFKGFE 527

Query: 713 GSLWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G +         +        + +   ++  +R  W ELK+ V T G+ N N  
Sbjct: 528 NSKYASGDYFDKYTEQEWKPATERVRTLFETAGIDIPTREDWQELKQAVMTSGLYNQNLQ 587

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PT +I+ I   + SI P    + ++                         E MI  +
Sbjct: 588 AVPPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGMIGRV 623

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
            Y    + N      D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + +
Sbjct: 624 YYPAAFMTN------DNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTR 677

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 678 DINKAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 712


>gi|238695117|ref|YP_002922311.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
 gi|220029253|gb|ACL78188.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
          Length = 747

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/796 (24%), Positives = 327/796 (41%), Gaps = 70/796 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V      +P     H           R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQF--QPIDFYSH---------IERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y +        IE PQ  +M
Sbjct: 112 YDREILQKYSHEEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +ETE   +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPIWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVSDL-HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           FSPD    L  DLY ++ E   + YE+      ++  R + A  L+  +    F TG  +
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTGRIY 410

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANN 614
            TF D  N      ++V  +  SNLC EI L +        E ++C L +  L      N
Sbjct: 411 PTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNFDIEN 470

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             + +++A  +   VR LDN++D   + +E+A  +    R++G+G+  F S L      Y
Sbjct: 471 MEEVERIAMVM---VRALDNLLDYQDYPVEQA-LTAKKRRSLGVGVTNFASYLADNFFTY 526

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               A E   ++ E + +  I ASV LA+E+GA      + + +G  PID      +  D
Sbjct: 527 ED--ANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYK---KTVD 581

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           EL ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +
Sbjct: 582 EL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSVKGS 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G F  V                           ++ N   + D L  +          
Sbjct: 641 KEGQFNQVIP-------------------------NVENNADVIDLLWTLIKKGN----K 671

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYYLRSRS 907
             +  A+  QK++DQA S N   D  + K        +      A   GLKT YY   R 
Sbjct: 672 PYLTLAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYANVRD 731

Query: 908 ATSVEKSTLKGVDGKL 923
                +   +    KL
Sbjct: 732 GADGTEDASECSSCKL 747


>gi|217967765|ref|YP_002353271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
 gi|217336864|gb|ACK42657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
          Length = 749

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 284/635 (44%), Gaps = 83/635 (13%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVE 341
           +        L IL  RY     NG+ IE P+  F RVA  +A  +       + E     
Sbjct: 2   KKVELTEQALMILEKRYLKKDENGNVIETPEEMFERVAETIAKVDLIYDPNADVEAVKDI 61

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY ++SS  F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G
Sbjct: 62  FYEMMSSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTG 121

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  T G + G + F+KV +     + QGG R+GA    L   H D+ E
Sbjct: 122 FSFSKIRPKGDIVRSTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRVDHPDIWE 181

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +   G       + N +  + D FM+ V  +  ++L +P                 
Sbjct: 182 FVTCKDQEGV----LSNFNISVAVTDGFMEAVLNDEEFSLINP----------------- 220

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V ++I A  L+  ++   ++ G P + F D  N ++P   VG + S
Sbjct: 221 ----------RNKEVVKRIRAKELFDLIVEQAWKNGEPGVIFIDEINRKNPTPEVGEIES 270

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           + ++DKL +T+  AV  LDNVID
Sbjct: 271 TNPCGEQPLLPFES----CNLGSINLGRMLKKVGDKYEINWDKLRTTVHNAVHFLDNVID 326

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + ++  ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  A
Sbjct: 327 ANFYPLKPIEEMTKANRKIGLGVMGFYDLLIRLEVPYNTKEARDIAENIMSFIQKEAREA 386

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ERG + ++  S++                                         
Sbjct: 387 SQELAKERGVFPNWDKSIYRDMGLR----------------------------------- 411

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN+    IAPT +I+ I   S  I+P +   + +    G++  V       L + +L+ 
Sbjct: 412 LRNATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKENLYS 471

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
           E +I  +    G+I NI  IP+ LK++  TA +I P   +   +  QK++D A S  +  
Sbjct: 472 EELIEKVI-QKGTIQNITEIPEKLKRLFVTALDISPEDHVLMQASFQKYVDNAVSKTVNL 530

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            ++ + + +  IY  A+ + LK     R +S  S 
Sbjct: 531 REDATLEDIRKIYLMAYELKLKGITVYRDKSRASQ 565


>gi|298674718|ref|YP_003726468.1| ribonucleoside-diphosphate reductase [Methanohalobium evestigatum
           Z-7303]
 gi|298287706|gb|ADI73672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalobium evestigatum Z-7303]
          Length = 695

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/784 (25%), Positives = 337/784 (42%), Gaps = 120/784 (15%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   DG  + F+S ++   + +A   + +             +   +S   ++       
Sbjct: 4   IKKRDGRTVDFDSDKITQAIHKAIHSVNENDGD---------LARKMSYQVIDN------ 48

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                             LE   +  + +V           ++  Y E    YI      
Sbjct: 49  ------------------LENRFKNTIPSVEDVQDIVEDVLIKNGYSEVAKSYI------ 84

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
            L      +         +K++ D       +++L  RY L   NG+ +E P   F RVA
Sbjct: 85  -LYRRKRSEVRETKKYLGIKHD-DLKLSVNAIRVLERRYLLKGENGNPVETPSEMFERVA 142

Query: 326 MGLALKETEK----EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
             ++  +            EFY ++S+  F+ ++PTL N+GT   QLS+CF+  V D + 
Sbjct: 143 NSVSSIDKRYGYNPYDSKAEFYRMMSNLEFLPNSPTLMNAGTELGQLSACFVLPVEDSMK 202

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF AL   +++ K  GG G  ++ +R  G  +  T G + G + F+ + +     + QG
Sbjct: 203 DIFEALTNMSLIHKSGGGTGFSFSKLRPNGDIVKSTKGVASGPVSFMSIFDQATEVIKQG 262

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKR+GA    L   H D+ EF++ ++  G       + N +  + D FMK V  ++ + L
Sbjct: 263 GKRRGANMGILRIDHPDIIEFINSKEKEG----YLDNFNISVGVTDEFMKAVQSDSKYDL 318

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            +P                                  K+ A  ++  + TM + TG P +
Sbjct: 319 INPRTGK---------------------------TTEKLRARDIFDLITTMAWRTGDPGM 351

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            F D  N R P  HV  + S+N C E+ L         CNLGSINL     N+  +++KL
Sbjct: 352 IFLDEINRRHPVSHVRTIESTNPCGEVPLLPYES----CNLGSINLSKMVKNDTINWEKL 407

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +   + +  LDNVID N + + +  +    +R IGLG+MG       L+IPY S EA+E
Sbjct: 408 KNNTHSGIHFLDNVIDANKYPLNEIDRETKNNRKIGLGVMGLAEMFAKLNIPYNSEEAIE 467

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            A+  M+FI+  ++  SVEL ++RG++ +FKGS W++                       
Sbjct: 468 TAENIMKFINEESVKKSVELGEKRGSFPNFKGSQWEK----------------------- 504

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                       K   MRN+    IAPT TI+ I   S  I+P +   +V++ M+     
Sbjct: 505 ------------KYSSMRNATVNTIAPTGTISIIANTSSGIEPIFALSFVRNVMATQLLE 552

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN    N  K+R+ + + ++ D+    GSI N++++P D++ +  T+ +IDP W +   +
Sbjct: 553 VNPVFENVAKERNFYSKDLMMDISK-TGSIQNLKQVPKDVRDLFVTSLDIDPEWHVRMQA 611

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKG 918
             QK++D + S  + L E  +   +  IY  A+ +  K  T Y   S+    +E   LK 
Sbjct: 612 AFQKYVDNSVSKTVNLPEKATLDDVKRIYMMAYKLNCKGITIYRYGSKENQVLELGGLKK 671

Query: 919 VDGK 922
             G+
Sbjct: 672 EKGE 675



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD  KI++AI KA  +V            D+ + ++ Q +  L ++    
Sbjct: 4   IKKRDGRTVDFDSDKITQAIHKAIHSVNENDG-------DLARKMSYQVIDNL-ENRFKN 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            I  +ED+QD VE  L+++G+ ++ + Y+LYR +RS+VR  + +
Sbjct: 56  TIPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRKRSEVRETKKY 99


>gi|33620590|ref|NP_891805.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
 gi|33348057|gb|AAQ15458.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
          Length = 747

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/796 (24%), Positives = 328/796 (41%), Gaps = 70/796 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V      +P     H           R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQF--QPIDFYSH---------IERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y +        IE PQ  +M
Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +ETE   +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVSDL-HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           FSPD    L  DLY ++ E   + YE+      ++  R + A  L+  +    F TG  +
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTGRIY 410

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANN 614
            TF D  N      ++V  +  SNLC EI L +        E ++C L +  L      N
Sbjct: 411 PTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNFDIEN 470

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             + +++A  +   VR LDN++D   + +E+A  +    R++G+G+  F S L      Y
Sbjct: 471 MEEVERIAMVM---VRALDNLLDYQDYPVEQA-LTAKKRRSLGVGVTNFASYLADNFFTY 526

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               A E   ++ E + +  I ASV+LA+E+GA      + + +G  PID      +  D
Sbjct: 527 ED--ANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRYGRGELPIDWYK---KTVD 581

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           EL ++    + W+EL+K +K  G+RNS   A+ P  + + +   +  I+P    + VK +
Sbjct: 582 EL-VDPVYEMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSVKGS 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G F  V                           ++ N   + D L  +          
Sbjct: 641 KEGQFNQVIP-------------------------NVENNADVIDLLWTLIKKGN----K 671

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYYLRSRS 907
             +  A+  QK++DQA S N   D  + K        +      A   GLKT YY   R 
Sbjct: 672 PYLTLAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYANVRD 731

Query: 908 ATSVEKSTLKGVDGKL 923
                +   +    KL
Sbjct: 732 GADGTEDASECSSCKL 747


>gi|157311535|ref|YP_001469578.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage Phi1]
 gi|149380739|gb|ABR24744.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           Phi1]
          Length = 747

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 195/796 (24%), Positives = 327/796 (41%), Gaps = 70/796 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V                   +  +  R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQF-----------QPIDFYCHIERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y +        IE PQ  +M
Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +ETE   +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVSDL-HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           FSPD    L  DLY ++ E   + YE+      ++  R + A  L+  +    F TG  +
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR-VKAEDLFLAVAIERFNTGRIY 410

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANN 614
            TF D  N      ++V  +  SNLC EI L +        E ++C L +  L      N
Sbjct: 411 PTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNFDIEN 470

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             + +++A  +   VR LDN++D   + +E+A  +    R++G+G+  F S L      Y
Sbjct: 471 MEEVERIAMVM---VRALDNLLDYQDYPVEQA-LTAKKRRSLGVGVTNFASYLADNFFTY 526

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               A E   ++ E + +  I ASV LA+E+GA      + + +G  PID      +  D
Sbjct: 527 ED--ANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYK---KTVD 581

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           EL ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +
Sbjct: 582 EL-VDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSVKGS 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G F  V                           ++ N   + D L  +          
Sbjct: 641 KEGQFNQVIP-------------------------NVENNADVIDLLWTLIKKGN----K 671

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYYLRSRS 907
             +  A+  QK++DQA S N   D  + K        +      A   GLKT YY   R 
Sbjct: 672 PYLTLAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYANVRD 731

Query: 908 ATSVEKSTLKGVDGKL 923
                + + +    KL
Sbjct: 732 GADGTEDSSECSSCKL 747


>gi|297582632|ref|YP_003698412.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           selenitireducens MLS10]
 gi|297141089|gb|ADH97846.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           selenitireducens MLS10]
          Length = 735

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/776 (30%), Positives = 356/776 (45%), Gaps = 106/776 (13%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +    +     +  ++   EP++    A    E L      T +    +A        +P
Sbjct: 16  TTRQTQMQDALNRVSM--SEPHWTYKAAALFAEDLYESAAKTRHLNTGEAYED-----FP 68

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGS 312
                 +  G+    L E     +L   A+ L  ++D  F Y GL +L DRY     +G 
Sbjct: 69  GLIFEGVRLGLYDNRLTEYYSPAELDEAASMLNPDQDRLFTYPGLFLLADRYLTRTTDGE 128

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E+PQ  F+ +A+ L + E ++++ A   E Y  +S  +   +TPTL N+G  H QLSS
Sbjct: 129 LFELPQERFLVIALVLMMHEPQEKRLALVREAYWAMSHLYMTVATPTLANAGKSHGQLSS 188

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+    + A L+K  GG+G  +  VR LG+ I G  G S GVIP+++ 
Sbjct: 189 CFIDTVDDSLDGIYLNNWDIARLSKDGGGIGVYYGKVRALGSDIKGFKGNSSGVIPWIRQ 248

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            N+TAV+V+Q G+R+GA+  YL+ +H D+   FLDL+ N GD+RR+ HD+ T   +PDLF
Sbjct: 249 LNNTAVSVDQLGQRQGAIAVYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVCLPDLF 308

Query: 490 MKRVTQN-------AGWTLFSPDEVS-------------DLHDLYGKEFEIAYENYERQA 529
           MK++ +          W +F P EV               L D + +     +     +A
Sbjct: 309 MKKLEETDENGRSIGEWHVFCPHEVKQIMGWKDKDGNPLGLEDFFDEADRPYFTEKYEEA 368

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-----VVHSSNL 584
               +       A+ +  +M+    ETG P+  ++D  N ++P +  G      ++SSNL
Sbjct: 369 VHHPLLPRETYRAMDIMARMMVSQLETGTPYFFYRDEVNRQNPNKIAGEPGRTTIYSSNL 428

Query: 585 CTEITLNSSSE--------------------ETAVCNLGSINLLAHFANNQFDYDKLAST 624
           CTEI  N S                      +  VCNL S+NL      N  D D L   
Sbjct: 429 CTEIAQNMSPSVITKEYETEEGDQVIVRKPGDFVVCNLSSVNL-----GNAGDPDILKRL 483

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   +R+LDNVID+N   +++A+++N  +RA+GLG  G+   L    I + S EAV+ AD
Sbjct: 484 IPIQMRMLDNVIDLNQLPVQQARRTNSRYRAVGLGTFGWHHYLAKNQIHWESDEAVQEAD 543

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I++ AI AS  LA+E+GAY +FKGS W+ G +                    +  
Sbjct: 544 RLYETIAYLAIEASAALAREKGAYPAFKGSEWESGRY--------------FERRGYTSA 589

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LKK V   G+RN   MA+AP ++ A I G +  IDP Y   + +   +  F V   
Sbjct: 590 NWQTLKKTVSESGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEFAEEKKNFKFLVTAP 649

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L                                +       T   +D  W I   + RQ
Sbjct: 650 EL------------------------------DHNTYPYYQKTRHTLDQTWSIRQNAARQ 679

Query: 865 KWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           K IDQ  S NLY+      K+L  ++ +AW  GLKTTYY+RS S   +E   +   
Sbjct: 680 KHIDQGVSFNLYVHHAIRAKELLSLHLEAWKQGLKTTYYIRSTSQEEIESCDVCES 735


>gi|163847312|ref|YP_001635356.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525156|ref|YP_002569627.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           sp. Y-400-fl]
 gi|163668601|gb|ABY34967.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449035|gb|ACM53301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/662 (26%), Positives = 298/662 (45%), Gaps = 49/662 (7%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343
               +   +L  RY L    G  IE P+  F RVA  +A  +          E+RA  FY
Sbjct: 10  NLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASAEQVEERAERFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L++  +F  ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  
Sbjct: 70  HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+
Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D  +  + N +  I D FM+ V ++  + L +P     L  +  ++      
Sbjct: 190 TCKL----DTTKITNFNISVAITDAFMRAVERDEEYDLINPRT--GLGQIASRDGLKHPL 243

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E     G+     ++ A  ++  ++     TG P + F D  N  +P  H+G   ++N
Sbjct: 244 TGEVLVPAGQPM---RLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGEYEATN 300

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C E  L +      VCNLGSINL     +    D++ L   +  + R LDNVID N + 
Sbjct: 301 PCGEQPLLAYD----VCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYP 356

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+  + +   R IGLG+MG+   L  L IPY S +A+++A + M FI   +  AS +LA
Sbjct: 357 LEQITQLSQRIRRIGLGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLA 416

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG +  ++ S+W                R + +  R  RL             +RN N
Sbjct: 417 RERGPFPEWEYSIW--------GPDATCARRPDGSRIRPQRL-------------LRNCN 455

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
              +APT TI+ I G S  I+P +   + +         +N   V + K+   + + ++ 
Sbjct: 456 VTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADTRMLDINQDFVAQAKREGWYSDELME 515

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPS 881
            +   D    +   +P  ++++  TA +I P W +   +  Q++ D A S  + +  E +
Sbjct: 516 RIA--DTGHIHHPEVPASVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEAT 573

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK-LNAVPVTDPNSSTHSLGI 940
             ++   Y  A+ +G K     R  S  +   ST  G  GK     P +D         +
Sbjct: 574 PDQVREAYELAFRLGCKGITVYRDGSRANQVLST--GSTGKSAEPAPASDQPVELKPRPV 631

Query: 941 PS 942
           P+
Sbjct: 632 PA 633


>gi|330834375|ref|YP_004409103.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
 gi|329566514|gb|AEB94619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
          Length = 820

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 208/879 (23%), Positives = 371/879 (42%), Gaps = 121/879 (13%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
            S ++     K+ ++  DG    F  +++   +      + +   K VL  +  N+ +  
Sbjct: 2   QSDTNVLSLSKISVIKRDGKKEEFKLEKILSKLGPMHDEIVEGIVKDVLQNSTDNVINTR 61

Query: 194 SESDLETALIFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
             +D+        R LIE   +      +  R++L ++   V      K           
Sbjct: 62  VIADIVE------RNLIEGSLEHQELMDLAKRYVLSRIYNHVFGKGKWKGID-------- 107

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
                                                ++D    Y  L++L  RY L   
Sbjct: 108 -------------------------------------DKDLLISYNALKVLEARYLLKNP 130

Query: 311 GS--RIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            +   +E PQ  F RVA  LA  E EK K   E FY+++S+  F+ +TP L NSGTR   
Sbjct: 131 ETLRYVETPQMMFRRVASYLAGVEREKRKEIEEKFYDIMSTLRFVPNTPALMNSGTRLGI 190

Query: 368 LSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           LS+CF+  V D +      GI+  L+  A++ +  GG G D++ +R  G  +  T G + 
Sbjct: 191 LSACFVLPVKDSMTTQNGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVAS 250

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+K+ + +   V QGGKR+GA    +  WH D+E+F+  +     D +   + N +
Sbjct: 251 GPVSFMKIFDVSTDVVKQGGKRRGANMGVMHVWHADIEDFIRSKTGDLKDVQ-LQNFNIS 309

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD------------ 530
             + D FM+ V +     L +P +       +      A  NY R+              
Sbjct: 310 VGVYDYFMEAVMKEEQVPLITPRKTKIKGTDHEYYIVKA-RNYMREDWVQEEILRELEER 368

Query: 531 --------------------RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 E  + R ++A  L+++++   +++G P + F D  N R
Sbjct: 369 GPVYLDESKIITVDEALAIAESEGAIIRWVNARNLFQQIVKGAWDSGDPGLLFIDEINRR 428

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIR 626
            P  ++G + ++N C E  L S       CNLGS+NL             D++ L + I+
Sbjct: 429 HPVWYLGKIQATNPCGEEPLLSWES----CNLGSLNLELFVKEKNGKPYIDWEDLTNVIK 484

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR LDNV+D N + + + +++    R +GLG+MG   AL  L IPY S +A+ ++   
Sbjct: 485 YAVRFLDNVVDANRYPLPQIEQATKMTRKVGLGVMGLARALIKLGIPYDSVDAIYVSYNL 544

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQ---------GVFPIDSIGLLAEVRDELA 737
            +FI + A+ AS+ELA+E+G++ ++    +            +  I  +        +  
Sbjct: 545 AKFIYYQAMKASIELAKEKGSFPAYDPVRYKDIWESAKEFEDILAISEVKGEPSDYAKAI 604

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           M   +++   ELK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G
Sbjct: 605 MAEAAKIDISELKDLRMRYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVG 664

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  ++   +  L++ +L    +I  +    G +G+   +P  ++++  TA E++PM+ +
Sbjct: 665 KFMEIDPLFLEYLRKYELDTPEVIKKI-AESGEVGDNPFVPKTIRRLFRTAHEVEPMYHV 723

Query: 858 ESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKST 915
              +  Q+W D   S  +    E + + +  +Y  AW +G+K     R +S    V    
Sbjct: 724 LHQAAWQQWNDSGTSKTINLRSEETEETVGKVYLTAWRLGIKGITVYRDKSKSQQVIYFG 783

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVC 953
           LK    K          S            +    C+ C
Sbjct: 784 LK----KEREEKSKQTTSLRLEKKFVEVSENFSGGCKTC 818



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  + VIKR+G    F   KI          +   G      V+ I+K++ + +   ++
Sbjct: 9   SLSKISVIKRDGKKEEFKLEKI----------LSKLGPMHDEIVEGIVKDVLQNSTDNVI 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVL 120
                        I D VE +L++          + + YVL
Sbjct: 59  NTRV---------IADIVERNLIEGSLEHQELMDLAKRYVL 90


>gi|222056106|ref|YP_002538468.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
 gi|221565395|gb|ACM21367.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
          Length = 742

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/658 (26%), Positives = 298/658 (45%), Gaps = 81/658 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSS 348
             + +L  RY     +G  +E P   F RVA  +A  +       +    A +F+ +++S
Sbjct: 15  NAVTVLEKRYLKRDKDGKVLESPVDMFRRVAESIAAADARFDKKADIAALADKFFAMMTS 74

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R
Sbjct: 75  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKHTALIHKSGGGTGFSFSRLR 134

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  +  
Sbjct: 135 PANDMVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA- 193

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+R+ ++ N +  + + FMK V  +  + L +P        L               
Sbjct: 194 ---DQRQLNNFNISVGLTEEFMKAVDADREYNLINPRSGEKAGSL--------------- 235

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                       +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C E 
Sbjct: 236 ------------NARKVFNRIVKQAWENGEPGIIFIDRLNKDNPTPHIGQIESTNPCGEQ 283

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     + + ++ +L   I  AV  LDNVI++N + +E+   
Sbjct: 284 PLLPYES----CNLGSINLGKMVEHGEINWQRLKEVILLAVNFLDNVIEVNNYPLEQIDA 339

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MG+   L LL IPY S EA+E+ ++ M+FI+    +ASV+LA+ RG +
Sbjct: 340 MTRANRKIGLGVMGWADLLILLGIPYNSKEAIELGEKIMKFINDEGHAASVQLAKVRGPF 399

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +FKGS++D+                                       +RN+    IAP
Sbjct: 400 PNFKGSIFDKPGMEP----------------------------------IRNATVTTIAP 425

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  ++P +   +++  M  +    VN       K+   + E ++  +  H
Sbjct: 426 TGTISIIANASSGVEPLFAVSFIRQVMDKNILLEVNPIFEETAKKEGFYSEELMQKIAEH 485

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            G++ +I  IP+ ++ +  TA +I P   I   +  QK  D A S  + + +  + ++++
Sbjct: 486 -GTVHDIPEIPEQIRNVFVTAHDITPEVHISMQAAFQKHTDNAVSKTVNFPNSATIEEVE 544

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            +YR A+    K     R  S      ST K  +     +PV D   S H    P + 
Sbjct: 545 KVYRLAYETNCKGVTIYRDGSRDEQVLSTGKKDEAPKT-LPVADEKRS-HKRERPKAL 600


>gi|117530177|ref|YP_851020.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|86990303|dbj|BAE79255.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|117165789|dbj|BAF36097.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|124270943|dbj|BAF45773.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM02]
 gi|124270945|dbj|BAF45774.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM03]
 gi|124270947|dbj|BAF45775.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-HPM05]
          Length = 742

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/797 (28%), Positives = 366/797 (45%), Gaps = 87/797 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  DG+   +++ R   ++  AC GL+ V    +     +     ++  +++  LI
Sbjct: 2   QINVIHTDGSRTPYDANRAIEVINWACEGLE-VDPDKLSRRLSRRFNADITTEEIQNGLI 60

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L + + P++ KV+ R  +   RR+V         KA    +   YP  F     E
Sbjct: 61  RTAAELADLQYPDWLKVSGRLRMWDWRRKV---------KARRGYLYGNYPVAFEYLRSE 111

Query: 263 GVKARLLHESMMD----FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           G+    L +  +D     D+      +  ERD  F+  G  +L  RY L       E+ Q
Sbjct: 112 GLYEGDLIKKFLDTYSADDIAEAGTWIDPERDMRFDISGADLLTARYLLEG-----ELLQ 166

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++  A+ L++ E   E+   A + Y+LLS      +TP + N       LSSC +  +
Sbjct: 167 EMWLTQALLLSMLEPAHERMTFAHKAYDLLSLGKISLATPLMSNLRQADGSLSSCHIIDI 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D    IF  + + A ++   GG+G   + VR  G+ I    G S GV P++K+ N T V
Sbjct: 227 DDSRESIFDNISQLAAMSANGGGVGVRISKVRARGSRIRKKKGASGGVCPWIKIINATIV 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           A NQ G R GA    ++ WH D+ E++DLR + G +  +  D+     I D FM+RV  +
Sbjct: 287 ATNQRGVRAGACTVGIDVWHADLLEYMDLRGDAGSEHTKARDILLQFIISDEFMRRVILD 346

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQAD--RGEIKVFRKISAVALWRKM 549
             W L  P E+ +     L D+YG EF  AY   E   +     + V +K+SA A+W+KM
Sbjct: 347 KDWYLVCPTEIKNVFGYQLADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAIWKKM 406

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L +L ETG P++ FKD  N  +P +H G++   NLC E     +S  +  C L S+ L  
Sbjct: 407 LMLLLETGTPYVAFKDRINALNPNKHEGIIGGVNLCVESYSLFNSSYSHCCMLLSLVLPR 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                    D++A   RTAVR+LD   D+      +A+   + +R IG+G+MG    L +
Sbjct: 467 IAD------DEMADVSRTAVRLLDAACDLTTSPTPEARAHVNRYRTIGVGVMGLADWLAI 520

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            H+ Y     + + ++  E I F+   ASVELA+ERGAY +F GS W +G+       L 
Sbjct: 521 RHLRYQD---LNLIEKLFEDICFYTTQASVELAEERGAYPAFPGSEWSKGLI------LG 571

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++ +  N T    W  L +R+   G+RNS+ +A AP ++ + + G + S  P +  L
Sbjct: 572 GRDKEWVRDNSTDPERWYALMERIIVSGIRNSHILATAPNSSTSLVQGATASFLPVFSRL 631

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +  N +G  T+V  ++                                      +  + 
Sbjct: 632 TIDKNGAGINTIVPLYIKEAF--------------------------------HFYQESR 659

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL----------YLDEPSGKKLDFIYRQAWLMGLKT 899
              P  ++ +A+  QKW+D   S  L          +    + K L+ +Y QAW  GLKT
Sbjct: 660 YTHPSVVVSAAATIQKWVDTGLSTELLFNFNEHAYGFDYVATAKDLNDVYMQAWREGLKT 719

Query: 900 TYYLRSR-SATSVEKST 915
            YY+RS    T  EKS 
Sbjct: 720 VYYVRSMWQDTVTEKSE 736


>gi|92112512|ref|YP_572440.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91795602|gb|ABE57741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 723

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 184/760 (24%), Positives = 319/760 (41%), Gaps = 80/760 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHH 246
             +L         +   +  +Y  + A   L   +        RE     + +       
Sbjct: 4   TVELTEKTPAVEASRATQTLDYHALNAMLNLYDDQGRLQLDADREASRQYFLQHVNQNTV 63

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRY 305
               L  E     + E    + + +   DF  +    +  Y   F F+ +LG    Y  Y
Sbjct: 64  FFHTL-AEKLEYLVAENYYEQEVLD-QYDFPFIKSLFERAYAVKFRFQSFLGAFKYYTSY 121

Query: 306 FLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            L     R  +E  +     VA+ LA  +   E  A +  + +    F  +TPT  N G 
Sbjct: 122 TLKTFDGRRYLERFEDRVCMVALTLAQGD---EALARQLVDEIIHGRFQPATPTFLNCGK 178

Query: 364 -RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +  +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S 
Sbjct: 179 KQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREAGAPIKHIENQSS 238

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++  
Sbjct: 239 GIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLG 298

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             IPD+  +   +N    LFSP +V +++     +  +  + YE   D        KI+A
Sbjct: 299 VVIPDITFELAKRNEPMYLFSPYDVENVYGKPFGDISVTEKYYEMVDDARIR--KTKINA 356

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
             L++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++         
Sbjct: 357 RELFQTLAEVQFESGYPYVMFEDTVNRAN--PIAGRINMSNLCSEILQVNTPSDYEADLG 414

Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKS 649
                E   CNLGS+N+         D     +T+ TA+R L  V +++   ++    ++
Sbjct: 415 YERIGEDISCNLGSLNIA-----KTMDSSDFGATVETAIRGLTAVSEMSDIRSVPSIAEA 469

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708
           N    AIGLG M     L   HI Y S E ++  +     +++HA+ AS  LA ER  A+
Sbjct: 470 NKQSHAIGLGQMNLHGYLAREHIHYGSEEGLDFTNLYFYTVTYHALRASNRLAIERGRAF 529

Query: 709 SSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           + F+ S +  GV+               + E+ D+  ++  ++  W ELK  V   G+ N
Sbjct: 530 AGFEASDYASGVYFDKYTEQAWGPRTARVRELFDKAGIHVPTQEDWRELKASVMAHGLFN 589

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            N  A+ PT +I+ I   + SI P    + ++                         E  
Sbjct: 590 RNLQAVPPTGSISYINHSTSSIHPVVSKIEIRK------------------------EGK 625

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
           +  + Y          + DD +  +  A+EI P  +I++ +   + +DQ  SL L+  D 
Sbjct: 626 LGRVYYPA------PYLNDDNQDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDT 679

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + + ++     AW  G+KT YY+R R A  +E + ++G 
Sbjct: 680 ATTRDINRAQIYAWRKGIKTLYYVRLRQAA-LEGTEVEGC 718


>gi|108805660|ref|YP_645597.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766903|gb|ABG05785.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrobacter xylanophilus DSM 9941]
          Length = 747

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/648 (27%), Positives = 285/648 (43%), Gaps = 86/648 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----------KEKR 338
           D       L +L  RY    + G  +E P   F RVA  +A  E +           E+ 
Sbjct: 12  DIELTENALAVLRKRYLKKNDRGEPVERPVDMFRRVAGNIAEAELKFRDGEEGRALYEEY 71

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
              F  ++ S  FM ++PTL N+G    QLS+CF+  V D + GI+  L+  A++ K  G
Sbjct: 72  YGRFLQMMLSRRFMPNSPTLMNAGRELQQLSACFVLPVEDSIDGIYDTLKHQAIIHKSGG 131

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R     +  T G S G + F+ + + +   + QGG R+GA    L   H D
Sbjct: 132 GTGFAFSRLRPKNDIVQSTMGVSSGPVSFMAIYDASTDKIKQGGTRRGANMGILRVDHPD 191

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEF+  +    +D  +  + N +  I D FM+ V ++  + L +P              
Sbjct: 192 IEEFVTCK----NDNDQITNFNISVAITDAFMEAVEKDGEFELVNP-------------- 233

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                            V R++ A  L++K+    +  G P + F D  N  +P      
Sbjct: 234 -------------RNGAVTRRVRARELFKKIAYGAWLNGEPGVVFIDRINADNPTPQF-P 279

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVI 636
           + S+N C+E  L         CNLGSINL   ++      D+++L  T+RTAVR LDNVI
Sbjct: 280 IESTNPCSEAHLPPYDS----CNLGSINLSLFYSEEAGDVDWEELRETVRTAVRFLDNVI 335

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           + N + + + ++ +  +R IGLG+MGF   L  + IPY S E +  A+  M FI   A  
Sbjct: 336 EQNNYPLPQIEEMSKGNRRIGLGVMGFADLLIKMGIPYDSEEGLAFAERVMRFIDEEAWE 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA ERG ++ ++GS                E R +                     
Sbjct: 396 ASRALAAERGVFAHYEGSR--------------HEARGDR-------------------- 421

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            +RN+    IAPT TI+ I G S  I+P Y   +++     +   VN   V   ++R  +
Sbjct: 422 -VRNATVTTIAPTGTISLIAGCSGGIEPLYAVAFMRRQADMEMPDVNPEFVRVARERGFY 480

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E ++  +    GS+  +E +P+D++++  T+ +I P W +   +  QK      S  + 
Sbjct: 481 SEELMKKV-AEQGSVRGLEEVPEDVRRVWVTSHDISPEWHVRMQAAFQKHTSMGISKTIN 539

Query: 877 -LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             +E + + ++  YR A+ +G K     R  S      ST K      
Sbjct: 540 LPNEATVEDVERAYRLAYSLGCKGIAVYRDGSREEQVLSTGKTAKQPE 587


>gi|219849633|ref|YP_002464066.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aggregans DSM 9485]
 gi|219543892|gb|ACL25630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aggregans DSM 9485]
          Length = 820

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/664 (26%), Positives = 300/664 (45%), Gaps = 56/664 (8%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343
               +   +L  RY L    G  IE P+  F RVA  +A  +          E+RA  FY
Sbjct: 10  QLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASSEQVEERAERFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L++  +F  ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  
Sbjct: 70  HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+
Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D  +  + N +  + D FM+ V ++  + L +P            +  IA  
Sbjct: 190 TCKL----DTTKITNFNISVAVTDAFMRAVDRDEEYDLINPRT---------GQVHIASR 236

Query: 524 NYERQADRGEIKVFR----KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  +    G++ V      ++ A  ++  ++     TG P + F D  N  +P  H+G  
Sbjct: 237 DGLKHPLTGDVLVPPGQPMRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGAY 296

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDI 638
            ++N C E  L +      VCNLGSINL     A+   D+D L   +  + R LDNVID 
Sbjct: 297 EATNPCGEQPLLAYD----VCNLGSINLGKFVTADKTIDWDYLREVVHESTRFLDNVIDA 352

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + +E+    +   R IGLG+MG+   L  L IPY S +A+E+A + M FI   +  AS
Sbjct: 353 NHYPLEQITHLSQRIRRIGLGVMGWADMLVRLGIPYNSHDAIELARKVMHFIDEESKVAS 412

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+ERG +  ++ S+W                R + +  R  RL             +
Sbjct: 413 EQLARERGPFPEWEYSIW--------GPDATCARRSDGSRIRPQRL-------------L 451

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN N   +APT TI+ I G S  I+P +   + +         +N   V + K+   +  
Sbjct: 452 RNCNVTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADSRMLDINQDFVAQAKREGWYSP 511

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++  +   D    +   +P +++++  TA +I P W +   +  Q++ D A S  + + 
Sbjct: 512 ELMERIA--DTGHIHHPDVPAEVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFP 569

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E +  ++   Y  A+ +G K     R  S  +   ST  G  GK  + P     ++T  
Sbjct: 570 HEATPDQVREAYELAFRLGCKGITVYRDGSRENQVLST--GSTGKSESKPAAQSATTTPV 627

Query: 938 LGIP 941
              P
Sbjct: 628 ELTP 631


>gi|78222511|ref|YP_384258.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193766|gb|ABB31533.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 742

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 174/646 (26%), Positives = 298/646 (46%), Gaps = 81/646 (12%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G  +E P   F RVA  +A+ +       + +  A +FY+L++SF F+
Sbjct: 20  VLEKRYLKRDTDGRVLETPADMFRRVAEAIAVADRNFDKKADTKALAQKFYDLMTSFEFL 79

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R    
Sbjct: 80  PNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLRPAND 139

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  +    DD
Sbjct: 140 VVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMCK----DD 195

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           ++  ++ N +  + + FM+ V ++A + L +P +                          
Sbjct: 196 QKHLNNFNISVGLTEAFMEAVERDADYDLRNPRDGK------------------------ 231

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                  ++A  ++ +++   ++ G P I F D  N  +P  H+G + S+N C E  L  
Sbjct: 232 ---PCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQPLLP 288

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNLGSINL     N   D+ +L   IR  V  LDNVI++N + + +      +
Sbjct: 289 YES----CNLGSINLGKMVNNGDVDWKRLREVIRLGVHFLDNVIEVNNYPLPQINDMTRS 344

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IGLG+MG+   L LL IPY+SPEA+ + ++ M FI+    + S ELA  RGA+ +F 
Sbjct: 345 NRKIGLGVMGWADMLILLGIPYSSPEAISLGEKVMRFINDEGHAYSRELAAVRGAFPNFV 404

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS +D+                                       +RN+    IAPT TI
Sbjct: 405 GSTFDRPG----------------------------------EGPIRNATVTTIAPTGTI 430

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   S  ++P +   +V+  +  +    VN       + +  + E ++  +  H G++
Sbjct: 431 SIIANASSGVEPLFAVSFVRQVLDKNILVEVNPIFEEIARDQGFYSEELMQKIAQH-GTV 489

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
            ++  IP+D++K+  TA +I P   IE  +  QK+ D A S  +      + ++++ +YR
Sbjct: 490 HDLAEIPEDIRKVFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNAATIEEVEKVYR 549

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            A+ +  K     R  S      ST  G   +   V  T+   +  
Sbjct: 550 LAYKLECKGVTIYRDGSRDEQVLST--GAKEEKEKVVQTEEKRAVK 593


>gi|73988081|ref|XP_862175.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           3 [Canis familiaris]
          Length = 491

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/510 (36%), Positives = 292/510 (57%), Gaps = 27/510 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G  + ++ +S +D  L     L + + Y+RDF++ Y G + L   Y L ING   E PQ 
Sbjct: 110 GRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+  ++ +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++  D
Sbjct: 170 MLMRVSVGIHEEDIDA---AIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 227 SIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYV 286

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N 
Sbjct: 287 DQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQ 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG
Sbjct: 347 DWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----RVRKVVKAQQLWYAIIESQTETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQF 616
            P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +
Sbjct: 402 TPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTY 461

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           D+ KLA   +  VR L+ +IDIN + + + 
Sbjct: 462 DFKKLAEVTKVIVRNLNKIIDINYYPVPEV 491


>gi|327189836|gb|EGE56974.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 734

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/754 (25%), Positives = 315/754 (41%), Gaps = 86/754 (11%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLY 252
             L+   + +   L + E        R  L+K     ++       +     H+      
Sbjct: 32  EALDYHALNAMLNLYDDE-------GRIQLDKDHMAAKQYFLQHVNQNTVFFHN-----L 79

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +
Sbjct: 80  REKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFD 138

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G  +  +L
Sbjct: 139 GKRYLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGEL 195

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +
Sbjct: 196 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVM 255

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 256 KLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDI 315

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +    N    LFSP +V  ++ +   E  +  E Y        I   +KI A   ++ 
Sbjct: 316 TFELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVADARISK-KKIKAREFFQV 373

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N  +    VG +  SNLC+EI   S + E            
Sbjct: 374 LAEIQFESGYPYIMFEDTVNRAN--PIVGRISMSNLCSEILQVSEASEYNDDLSYKHLGK 431

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+ A       D      TI T++R L  V D++   ++   +K N    A
Sbjct: 432 DISCNLGSLNIAA-----AMDTADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHA 486

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S E V+  +     +++HAI AS  LA ER  ++  F+ S
Sbjct: 487 IGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGQSFKGFENS 546

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +             G +  + D+  ++  ++  W  LK  V T G+ N N  A+
Sbjct: 547 KYASGDYFDKYTEQEWKPATGKVQALFDDAGIHIPTQDDWAALKTAVMTSGLYNQNLQAV 606

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 607 PPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYY 642

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 643 PA------PFMTNDNLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +  + ++G 
Sbjct: 697 NKAQIYAWRKGIKTIYYIRLRQMA-LSGTEVQGC 729


>gi|86359306|ref|YP_471198.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86283408|gb|ABC92471.1| ribonucleotide-diphosphate reductase, alpha subunit protein
           [Rhizobium etli CFN 42]
          Length = 693

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/726 (26%), Positives = 304/726 (41%), Gaps = 73/726 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R       Y       +        E     + EG   + + +    F+ V 
Sbjct: 9   GRIQLDKDR--TAAKQYFLQHVNQNTVFFHNLREKLDYLVTEGYYEQEVLD-QYSFNFVR 65

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEK 337
              D  Y R F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 66  DLFDQAYARQFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD---EA 122

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +  + + S  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K 
Sbjct: 123 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 182

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H
Sbjct: 183 GGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 242

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V  ++ +   
Sbjct: 243 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVYGMPFT 302

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E  +  E Y        I   +KI A   ++ +  + FE+G+P+I F+D  N  +     
Sbjct: 303 EISVT-EKYREMVADARISK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN--PVA 358

Query: 577 GVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLC+EI   S + E               CNLGS+N+ A       D      T
Sbjct: 359 GRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAA-----AMDSGDFGKT 413

Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           I TA+R L  V D++   ++   +K N    AIGLG M     L    I Y S E V   
Sbjct: 414 IETAIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVNFT 473

Query: 684 DESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRD 734
           +     +++HAI AS  LA ERGA +  F+ S +  G +         +        + D
Sbjct: 474 NIYFYTVTYHAIRASNLLAVERGASFRGFENSKYASGDYFDKYTEQEWKPATEKVQALFD 533

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +  ++  ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P    + ++  
Sbjct: 534 KSGIHIPTQDDWVALKTGVMTTGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK- 592

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                                  E  I  + Y          + DD    +  A+EI P 
Sbjct: 593 -----------------------EGKIGRVYYPA------PFMTDDNLDYYQDAYEIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            +I++ +   + +DQ  SL   + D  + + ++     AW  G+KT YY+R R    +  
Sbjct: 624 KIIDTYAAATQHVDQGLSLTSFFRDTATTRDINKTQIYAWKKGIKTIYYIRLRQMA-LSG 682

Query: 914 STLKGV 919
           + ++G 
Sbjct: 683 TEVQGC 688


>gi|307547023|ref|YP_003899502.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307219047|emb|CBV44317.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 728

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 189/759 (24%), Positives = 315/759 (41%), Gaps = 80/759 (10%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHE 247
            + E   + ++     K  ++  + A   L            +E     + +        
Sbjct: 10  DETEETAMANADHAAPKVLDFHALNAMLNLYDADGRLQLDADKEAARQYFLQHVNQNTVF 69

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYF 306
              L  E     +EEG     + E   D   V    D  Y   F F+ +LG    Y  Y 
Sbjct: 70  FHTL-EEKLDYLVEEGYYEGEILE-QYDASFVKALFDQAYALKFRFQSFLGAFKYYTSYT 127

Query: 307 LHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L     R  +E  +     VA+ LA  +   E  A    + +    F  +TPT  N G +
Sbjct: 128 LKTFDGRRYLERFEDRVCMVALTLARGD---EALARTLVDEILHGRFQPATPTFLNCGKQ 184

Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G
Sbjct: 185 QRGELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVAFSLSNIRESGAPIKRIANQSSG 244

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 245 VIPIMKLLEDAFSYANQLGARQGAGAVYLNVHHPDILRFLDTKRENADEKIRIKTLSLGV 304

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +   +N    LFSP +V  ++ +   +  +  E Y+   D   I+  +   A 
Sbjct: 305 VIPDITFELAKRNEPMYLFSPYDVERVYGVPFGDISVT-EKYQEMVDDARIRKTKT-DAR 362

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------ 597
            L++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +S  E       
Sbjct: 363 ELFQTLAELQFESGYPYVLFEDTANRDN--PIAGRINMSNLCSEILQVNSPSEYDDDLDY 420

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
                   CNLGS+N+         D     +++ TAVR L  V +++   ++    ++N
Sbjct: 421 RHTGEDISCNLGSLNIAR-----VMDSPDFGTSVETAVRALSAVSEMSDIRSVPSIAEAN 475

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               AIGLG M     L   HI Y S E ++  +     I++HA+ AS  LA ER   ++
Sbjct: 476 ARSHAIGLGQMNLHGFLAREHIHYGSEEGLDFTNIYFYTITYHAVRASNRLAIERGERFA 535

Query: 710 SFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +               + E+ D   +   +R  W ELK  V   G+ N 
Sbjct: 536 GFENSAYASGSYFDKYTENEWQPRTQRVRELFDNAGIQIPTREDWRELKASVMQYGLFNR 595

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           N  A+ PT +I+ I   + SI P    + ++                         E  +
Sbjct: 596 NLQAVPPTGSISYINHATSSIHPVVSKIEIRK------------------------EGKL 631

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             + Y          + DD +  +  A+EI P  +I++ +   + +DQ  SL L+  D  
Sbjct: 632 GRVYYPA------PYLNDDNQDYYRDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTA 685

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + ++     AW  G+KT YY+R R A  +E + ++G 
Sbjct: 686 TTRDINRAQIYAWRKGIKTIYYVRLRQAA-LEGTEVEGC 723


>gi|310830453|ref|YP_003965554.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309249920|gb|ADO59486.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 748

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 236/777 (30%), Positives = 371/777 (47%), Gaps = 94/777 (12%)

Query: 193 LSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++ +D+   +  ++  LI  +EP++  + +   + KL +E       +  K+   +    
Sbjct: 14  INAADITRTIYMTAVELISIEEPDWTYIASAAYVNKLYKEAA---LHRGYKSYPAKPYGS 70

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-N 310
           +     + + +G+  R L E   + +L+ L   + Y++D  F+Y+G+  L +RY     +
Sbjct: 71  FSTLIKQLVCKGIYKRELIEEFTEQELLKLEETIDYKKDKLFDYIGIVTLQERYLASDYD 130

Query: 311 GSRIEMPQAFFMRVAMGLALKE-------------------TEKEKRAVEFYNLLSSFHF 351
           G  +E+PQ   M +AM L +                      E+     E Y  +S  + 
Sbjct: 131 GKTMELPQERLMLIAMDLMIDAGKMLDEKGKPTDDFLPGGRKERLSYIQEAYWAMSHLYM 190

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPTL N+G     QLSSCF+ TV DDL  IF +  + A L+K  GG+G     VR  
Sbjct: 191 TTATPTLSNAGKAKGGQLSSCFIDTVDDDLRSIFDSNTDVARLSKVGGGIGVYVGKVRSR 250

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I G   KS G++P+++  N+TAV+V+Q G RKG++  YL+ WH D+  FLDL+ N G
Sbjct: 251 GAKIRGYEHKSSGLVPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILAFLDLKLNNG 310

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV-----SDLHDLYGKE-FEIAYEN 524
           D+R R HD+ T   IPDLFM+RV +   + LF P EV       L D Y +E  +  +  
Sbjct: 311 DERMRAHDIFTGVCIPDLFMERVERREEFYLFDPHEVRTFMGWSLEDYYDEEPGDGTFRR 370

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             ++     +     + A+ + ++M+    ETG P++ ++D  N  +P +  G+++SSNL
Sbjct: 371 KYQECVDHPLLSRVALPAIDIMKRMMKAQLETGTPYMFYRDTVNRANPNKAHGIIYSSNL 430

Query: 585 CTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDYDKL 621
           C EI  N S                         +  VCNL SI+L             L
Sbjct: 431 CVEIMQNMSATTVAEEKLVEIDGEKMIMTLKRPGDFVVCNLASISLARAVKEGV-----L 485

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I   +R+LDNVID+N   + +A  +N  +RAIGLG  G    L LL I + S EA E
Sbjct: 486 ERLIPIMIRMLDNVIDLNQIDVLQATHTNQKYRAIGLGTSGLHHLLALLGIMWESEEANE 545

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             D   E+I++ AI AS++LA+E+G+Y  FKGS W+ G +  D      +   +      
Sbjct: 546 YNDHLYEWIAYLAIKASMQLAKEKGSYPLFKGSEWETGKYFSDRDYTSGKREGKF----V 601

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W EL  +VK  G+RN   +AIAPT + + I G + SIDP Y+ L  +   +     
Sbjct: 602 TTEQWIELANQVKKHGIRNGYLLAIAPTGSTSIIAGTTASIDPIYKLLTYQEKTTYKIAN 661

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               L  +                               ++     AF +D +  I   +
Sbjct: 662 PAPDLNVKT------------------------------IQYYRKNAFLLDQLASIRMNA 691

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            RQ+ IDQ+QS NLY   +   K    ++ QAW  G+KTTYY+RS++ T  E  + +
Sbjct: 692 TRQRHIDQSQSFNLYIRPDIKAKDFLVLHLQAWKSGVKTTYYVRSQALTVDECDSCQ 748


>gi|325291516|ref|YP_004277380.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325059369|gb|ADY63060.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 729

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 193/778 (24%), Positives = 331/778 (42%), Gaps = 93/778 (11%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKL 228
           L++  +K  ++   K++  G     L+   + +   L ++      +  ++ AR      
Sbjct: 9   LRNTDAKQQVTAAQKHLDAG-----LDYHALNAMLNLYDENGKIQLDKDRLAARQ----- 58

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
                   +        H +     E     + EG   + + +    F+ V    D  Y 
Sbjct: 59  ----YFLQHVNQNTVFFHNL----REKLDYLVTEGYYEQEVLD-QYSFNFVRDLYDEAYA 109

Query: 289 RDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           R F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E+ A +  + 
Sbjct: 110 RKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGD---EQLARDLMDE 166

Query: 346 LSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    
Sbjct: 167 IISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSL 226

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD
Sbjct: 227 TNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLD 286

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E  ++ E 
Sbjct: 287 TKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGVPFTEISVS-EK 345

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  +KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNL
Sbjct: 346 YQEMVADSRIRK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN--PIAGRISMSNL 402

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI   S + E               CNLGS+N+ +       D      TI T++R L
Sbjct: 403 CSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIAS-----AMDSADFGKTIETSIRAL 457

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D++   ++   +K N    AIGLG M     L    I Y S E ++  +     ++
Sbjct: 458 TAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVT 517

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTS 742
           +HAI AS  LA ER  ++  F+ S +  G +               + ++ ++  ++  +
Sbjct: 518 YHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLFEKAGISIPT 577

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++          
Sbjct: 578 QEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK--------- 628

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                          E  I  + Y    + N      D  + +  A+EI P  +I++ + 
Sbjct: 629 ---------------EGKIGRVYYPASYLSN------DNLEYYQDAYEIGPEKIIDTYAA 667

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 668 ATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 724


>gi|319944854|ref|ZP_08019116.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319741424|gb|EFV93849.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 727

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 193/759 (25%), Positives = 324/759 (42%), Gaps = 83/759 (10%)

Query: 191 DGLSESD---LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            G+S+ D   L+   + +   L + + N      R    +         +        H 
Sbjct: 17  TGVSDDDKPGLDYHALNAMLNLYDADGNIQFEADRRAARQ-----YFLQHVNQNTVFFHN 71

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYF 306
           +     E     ++EG     + +     +      D  Y R F F  +LG    Y  Y 
Sbjct: 72  L----DEKLRYLVDEGYYDAEVLDQYSR-NFQRHIWDEAYSRKFRFPTFLGAFKYYTSYT 126

Query: 307 LHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   NG R  E  +   + VA+ LA  +   E+ A+ F + +    F  +TPT  N+G +
Sbjct: 127 LKTRNGQRYLERFEDRVVMVALTLARGD---EQLALRFMDEIIGGRFQPATPTFLNAGKK 183

Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  V D++  I  A+     L+K  GG+    T +R LGA I G   +S G
Sbjct: 184 SRGELISCFLLRVEDNMESIGRAINSALQLSKRGGGVALMLTNLRELGAPIKGIENQSSG 243

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 244 VVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGV 303

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +   +NA   LFSP +V  ++     E  +  E Y+       I+  +KI+A 
Sbjct: 304 VIPDVTFELAKRNADMYLFSPHDVEKVYGKAFSEISVT-EKYDEMVGDKRIRK-KKINAR 361

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
             ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   + +         
Sbjct: 362 EFFQTLAEIQFESGYPYIMFEDTVNAAN--PIEGRITMSNLCSEILQVNEASTFNDDLSY 419

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
                   CNLGS+N+ A       D   L +T+  AVR L  V +++   ++   ++ N
Sbjct: 420 RHLGTDISCNLGSLNIAA-----AMDGPDLGATVEAAVRALTAVSEMSAIDSVPSVRRGN 474

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               A+GLG M     L    I Y SPE ++        +++HA+ AS  LAQE+   + 
Sbjct: 475 DEAHAVGLGQMNLHGFLARERIHYGSPEGIDFTRVYFATVAYHALRASNLLAQEKGSTFV 534

Query: 710 SFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F  S +  G F    +            E+   + +   +R  W  L++ V   G+ N 
Sbjct: 535 GFDRSKYADGSFFEKYVTRDWLPETETVRELFARMDVTLPTREDWAALREAVMKHGLYNR 594

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           N  A+ PT +I+ I   + SI P    + ++                         E+ I
Sbjct: 595 NLQAVPPTGSISYINHSTSSIHPIVSKVEIRK------------------------ESKI 630

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             + Y          + +D  + +  A+EI P  LI++ +   + +DQ  SL L+   + 
Sbjct: 631 GRVYYPA------PFMTNDNLEYYRDAYEIGPEPLIDTYAAATEHVDQGLSLTLFFPSDA 684

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + ++     AW  G+KT YY+R R A  +E + ++G 
Sbjct: 685 TTRDINRAQIYAWKKGIKTIYYVRLRQAV-LEGTEVQGC 722


>gi|22125125|ref|NP_668548.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45442236|ref|NP_993775.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808371|ref|YP_652287.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108811298|ref|YP_647065.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145598905|ref|YP_001162981.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|165925303|ref|ZP_02221135.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939924|ref|ZP_02228462.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008354|ref|ZP_02229252.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212442|ref|ZP_02238477.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398490|ref|ZP_02304014.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421233|ref|ZP_02312986.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423147|ref|ZP_02314900.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167468721|ref|ZP_02333425.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           FV-1]
 gi|170023363|ref|YP_001719868.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|229838203|ref|ZP_04458362.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895451|ref|ZP_04510623.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|229898685|ref|ZP_04513830.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901544|ref|ZP_04516666.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|270489730|ref|ZP_06206804.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294504448|ref|YP_003568510.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21957984|gb|AAM84799.1|AE013726_2 ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis KIM 10]
 gi|45437100|gb|AAS62652.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774946|gb|ABG17465.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Nepal516]
 gi|108780284|gb|ABG14342.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Antiqua]
 gi|145210601|gb|ABP40008.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Pestoides F]
 gi|165912143|gb|EDR30782.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922910|gb|EDR40061.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992736|gb|EDR45037.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206373|gb|EDR50853.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960722|gb|EDR56743.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050994|gb|EDR62402.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057317|gb|EDR67063.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169749897|gb|ACA67415.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|229681473|gb|EEO77567.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|229688233|gb|EEO80304.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694569|gb|EEO84616.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701606|gb|EEO89633.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|262366434|gb|ACY62991.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270338234|gb|EFA49011.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294354907|gb|ADE65248.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320016141|gb|ADV99712.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 716

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/757 (24%), Positives = 318/757 (42%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 62

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 63  ----EKIDYLIEEGYYEKEVLD-QYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLK 117

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA   T  +  A E    + S  F  +TPT  N G  + 
Sbjct: 118 TFDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQR 174

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVI
Sbjct: 175 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVI 234

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 235 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVI 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP ++  ++ +   E  I+ E Y    D   I+  + I A   
Sbjct: 295 PDITFELAKNNEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNAPTEYHEDLSYRR 410

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D      +I  A+R L  V ++ N  ++   +K N  
Sbjct: 411 IGKDISCNLGSLNIAQ-----VMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQE 465

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F
Sbjct: 466 SHAIGLGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGF 525

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             S +  G F    I          +  +  +  +   ++  W  L++ V   G+ N N 
Sbjct: 526 DESDYASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNL 585

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 586 QAVPPTGSISYINHSTSSIHPIVSPIEIRK------------------------EGKIGR 621

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 622 VYYPA------PYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 711


>gi|51597272|ref|YP_071463.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949726|ref|YP_001400044.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|186896376|ref|YP_001873488.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590554|emb|CAH22195.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|152961221|gb|ABS48682.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|186699402|gb|ACC90031.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 716

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/757 (24%), Positives = 318/757 (42%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 62

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 63  ----EKIDYLIEEGYYEKEVLD-QYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLK 117

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA   T  +  A E    + S  F  +TPT  N G  + 
Sbjct: 118 TFDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQR 174

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVI
Sbjct: 175 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVI 234

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 235 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVI 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP ++  ++ +   E  I+ E Y    D   I+  + I A   
Sbjct: 295 PDITFELAKNNEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNAPTEYHEDLSYRH 410

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D      +I  A+R L  V ++ N  ++   +K N  
Sbjct: 411 IGKDISCNLGSLNIAQ-----VMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQE 465

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F
Sbjct: 466 SHAIGLGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGF 525

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             S +  G F    I          +  +  +  +   ++  W  L++ V   G+ N N 
Sbjct: 526 DESDYASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNL 585

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 586 QAVPPTGSISYINHSTSSIHPIVSPIEIRK------------------------EGKIGR 621

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 622 VYYPA------PYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 711


>gi|332162771|ref|YP_004299348.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606877|emb|CBY28375.1| ribonucleotide reductase of class Ib (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325667001|gb|ADZ43645.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 716

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/757 (24%), Positives = 317/757 (41%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 12  SSSELDYHSLNAMLNLYDADGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 62

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 63  ----EKLDYLVEEGYYEKEVLEK-YDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLK 117

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA      ++ A +    + +  F  +TPT  N G  + 
Sbjct: 118 TFDGKRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQR 174

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVI
Sbjct: 175 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVI 234

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 235 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP +V  ++ +   E  ++ E Y    D   I   + I A   
Sbjct: 295 PDITFELAKNNEEMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDDKRIHKSK-IKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +S  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRH 410

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D      +I TA+R L  V D+ N  ++   +K N  
Sbjct: 411 IGKDISCNLGSLNIAHI-----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQE 465

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y S EA++  +     +++HAI AS +LA ER   +  F
Sbjct: 466 SHAIGLGQMNLHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGNHFKGF 525

Query: 712 KGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             S +  G +               ++ +  +  ++   +  W  L++ V   G+ N N 
Sbjct: 526 DESAYASGEYFTKYTEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNL 585

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 586 QAVPPTGSISYINHSTSSIHPIVSPIEIRK------------------------EGKIGR 621

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 622 VYYPA------PYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 711


>gi|326772790|ref|ZP_08232074.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
 gi|326637422|gb|EGE38324.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
          Length = 718

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/749 (25%), Positives = 315/749 (42%), Gaps = 80/749 (10%)

Query: 206 SRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           S T+   E +Y  + A+  L             E     + +           L  E   
Sbjct: 10  SETVSSPELDYHALNAKLNLYDADGRIQFDADHEAARQYFLQHVNQNTVFFHDL-EEKLE 68

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             +EEG     + +     + V  A    Y   F F  +LG    Y  Y L   +G R  
Sbjct: 69  YLVEEGYYEGHILDKYSP-EFVKSAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKRYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+ LA  +   E+ A++  + + S  F  +TPT  N G  +  +  SCFL
Sbjct: 128 ERFEDRVTMVALTLADGD---EQLALDLVDEMMSGRFQPATPTFLNEGKAQRGEPVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R +GA I     +S GVIP +K+  D
Sbjct: 185 VRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N    LFSP +V  ++ +   +  +  E Y    D G I   +KI+A   ++ +  + 
Sbjct: 305 RNNEDMYLFSPYDVERVYGMPFADINVT-EKYREMVDDGRI-KKKKINARTFFQTLAEIQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCN 601
           FE+G+P++ F+D  N  +     G V  SNLC+EI   S   E               CN
Sbjct: 363 FESGYPYVMFEDTVNKAN--PIKGKVVMSNLCSEILQVSEPSELNEDLTYAHVGKDISCN 420

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGL 660
           LGS+N+         D    A TIRTAVR L  V D      +    + NH   AIGLG 
Sbjct: 421 LGSLNIA-----KTMDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y S E ++  +     + F A++AS E+A ER  ++  F+ S +  G
Sbjct: 476 MNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYASG 535

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    +          + E+    +++  +R  W EL +++K  G+ N N  A+ PT +
Sbjct: 536 EFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKIKKGGLYNRNLQAVPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 596 ISYINNSTSSIHPIVAKVEIRK------------------------EGKIGRVYYPA--- 628

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 629 ---PFMTNDNLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNRAQI 685

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R A  +  + ++G 
Sbjct: 686 YAWRKGIKTLYYIRLRQAA-LTGTEVEGC 713


>gi|123441278|ref|YP_001005265.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088239|emb|CAL11028.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 693

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 180/693 (25%), Positives = 300/693 (43%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L   +G
Sbjct: 40  EKLNYLVEEGYYEKDVLEK-YDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA      ++ A +    + +  F  +TPT  N G  +  +L 
Sbjct: 99  KRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQRGELV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R +GA I     +S GVIP +K
Sbjct: 156 SCFLLRIEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  ++ E Y    D   I+  + I A   ++ +
Sbjct: 276 FELAKNNEDMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDNKRIRKSK-IKAREFFQIL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +S  E             
Sbjct: 334 AEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      +I TA+R L  V D+ N  ++   +K N    AI
Sbjct: 392 ISCNLGSLNIAHI-----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S EA++  +     +++HAI AS +LA ER   +  F  S 
Sbjct: 447 GLGQMNLHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGSHFKGFDQST 506

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I          ++ +  +  ++   +  W  L++ V   G+ N N  A+ 
Sbjct: 507 YASGHYFTKYIEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 567 PTGSISYINHSTSSIHPIVSPIEIRK------------------------EGKIGRVYYP 602

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 603 A------PYMTNDNLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDIN 656

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 657 KAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 688


>gi|320533558|ref|ZP_08034211.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320134228|gb|EFW26523.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 718

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/749 (25%), Positives = 314/749 (41%), Gaps = 80/749 (10%)

Query: 206 SRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           S T+   + +Y  + A+  L            RE     + +           L  E   
Sbjct: 10  SETVSSPDLDYHALNAKLNLYDADGRIQFDADREAARQYFLQHVNQNTVFFHDL-EEKLE 68

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             +EEG     + +     + V  A    Y   F F  +LG    Y  Y L   +G R  
Sbjct: 69  YLVEEGYYEGHILDKYSP-EFVKTAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKRYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+ LA  +   E+  ++  + + S  F  +TPT  N G  +  +  SCFL
Sbjct: 128 ERFEDRVTMVALTLADGD---EQLTLDLVDEMMSGRFQPATPTFLNEGKAQRGEPVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R +GA I     +S GVIP +K+  D
Sbjct: 185 VRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N    LFSP +V  ++ +   +  +  E Y    D G I   +KI+A   ++ +  + 
Sbjct: 305 RNNEDMYLFSPYDVERVYGMPFADINVT-EKYREMVDDGRI-KKKKINARTFFQTLAEIQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCN 601
           FE+G+P++ F+D  N  +     G V  SNLC+EI   S   E               CN
Sbjct: 363 FESGYPYVMFEDTVNRAN--PIKGKVVMSNLCSEILQVSEPSELNEDLTFAHVGKDISCN 420

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGL 660
           LGS+N+         D    A TIRTAVR L  V D      +    + NH   AIGLG 
Sbjct: 421 LGSLNIA-----KTMDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y S E ++  +     + F A++AS E+A ER  ++  F+ S +  G
Sbjct: 476 MNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYASG 535

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    +          + E+    +++  +R  W EL ++VK  G+ N N  A+ PT +
Sbjct: 536 EFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKVKKGGLYNRNLQAVPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 596 ISYINNSTSSIHPIVAKVEIRK------------------------EGKIGRVYYPA--- 628

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                + +D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 629 ---PFMTNDNLDYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNRAQI 685

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R A  +  + ++G 
Sbjct: 686 YAWRKGIKTLYYIRLRQAA-LTGTEVEGC 713


>gi|238784827|ref|ZP_04628828.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238714243|gb|EEQ06254.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 693

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/732 (25%), Positives = 305/732 (41%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     IEE    + + +   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKLNYLIEEEYYEKEVLD-QY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
             +    A E    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 120 NPQ---LARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    +    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNSEDMYLFSPYDVEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+      +  D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIA-----HTMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
           EA++  +     + +HAI AS  LA ER   +  F  S +  G +    I    + +   
Sbjct: 468 EALDFTNIYFYTVVYHAIRASNLLAIERGCHFKGFDESAYASGSYFTKYIAQRWQPKTAK 527

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 ++ +    +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VEALFADVGITIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKRGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|329947188|ref|ZP_08294512.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525700|gb|EGF52726.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 718

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 192/749 (25%), Positives = 312/749 (41%), Gaps = 80/749 (10%)

Query: 206 SRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           S T+   + +Y  + A+  L             E     + +           L  E   
Sbjct: 10  SETVSSPDLDYHALNAKLNLYDANGRIQFDADHEAARQYFLQHVNQNTVFFHDL-EEKLE 68

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             +EEG     + +     + V  A    Y   F F  +LG    Y  Y L   +G R  
Sbjct: 69  YLVEEGYYEGHILDKYSP-EFVKDAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKRYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+ LA  +   E+ A++  + + S  F  +TPT  N G  +  +  SCFL
Sbjct: 128 ERFEDRVTMVALTLADGD---EQLALDLIDEMMSGRFQPATPTFLNEGKAQRGEPVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R +GA I     +S GVIP +K+  D
Sbjct: 185 VRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N    LFSP +V  ++ +   +  +  E Y    D G     +KI+A   ++ +  + 
Sbjct: 305 RNNEDMYLFSPYDVERVYGMPFADVNVT-EKYHEMVDDGR-IKKKKINARTFFQTLAEIQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCN 601
           FE+G+P++ F+D  N  +     G V  SNLC+EI   S                   CN
Sbjct: 363 FESGYPYVMFEDTVNKAN--PIKGKVVMSNLCSEILQVSEPSRLNEDLTFAHVGKDISCN 420

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGL 660
           LGS+N+         D    A TIRTAVR L  V D      +    + NH   AIGLG 
Sbjct: 421 LGSLNIA-----KTMDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y S E ++  +     + F A++AS E+A ER  ++  F+ S +  G
Sbjct: 476 MNLHGFLARERIHYGSEEGLDFTNVYFACVLFAALTASNEMAVERGESFVGFEDSTYASG 535

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    +          + E+    +++  +R  W EL  +VK  G+ N N  A+ PT +
Sbjct: 536 EFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAAKVKKGGLYNRNLQAVPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 596 ISYINNSTSSIHPIVAKVEIRK------------------------EGKIGRVYYPA--- 628

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYR 890
                + +D  + +  A+EI P  +I++ +   + +DQ  SL L + D  + + ++    
Sbjct: 629 ---PFMTNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDVNRAQI 685

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R A  +  + ++G 
Sbjct: 686 YAWRKGIKTLYYIRLRQAA-LIGTEVEGC 713


>gi|149365456|ref|ZP_01887491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
 gi|218929726|ref|YP_002347601.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|115348337|emb|CAL21270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CO92]
 gi|149291869|gb|EDM41943.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
          Length = 693

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 183/732 (25%), Positives = 307/732 (41%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     IEEG   + + +   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKIDYLIEEGYYEKEVLD-QY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA-- 117

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
            T  +  A E    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 118 -TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP ++  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDIEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   ++  E               CNLGS+N+         D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIAQ-----VMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I  A+R L  V ++ N  ++   +K N    AIGLG M     L    + Y S 
Sbjct: 408 PDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERLFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GL 728
           EA++  +     +++HAI AS +LA ER   +  F  S +  G F    I          
Sbjct: 468 EALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIEQSWQPKTAR 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|238762670|ref|ZP_04623639.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238698975|gb|EEP91723.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 693

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 185/732 (25%), Positives = 308/732 (42%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     +EEG   + + E   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKLDYLVEEGYYEKEVLE-RY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
               ++ A +    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 120 ---NQQVARDLVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  ++ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISVS-EKYREMVDDKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+         D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAQ-----TMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
           EA++  +     +++HAI AS +LA ER   +  F  S +  G +         + +   
Sbjct: 468 EALDFTNIYFYTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHYFNKYTEQSWQPKTAK 527

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 E  ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VRSLFAEAGISVPNQQDWVALRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|238759172|ref|ZP_04620340.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238702588|gb|EEP95137.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 709

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/757 (26%), Positives = 322/757 (42%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 5   SSSELDYHSLNAMLNLYDADGHIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 55

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 56  ----EKLDYLVEEGYYEKEVLE-RYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLK 110

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA+        A E    + S  F  +TPT  N G  + 
Sbjct: 111 TFDGKRYLERYEDRVCMVALTLAVGNP---TLARELVEEIISGRFQPATPTFLNCGKKQR 167

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  A+     L+K  GG+    + +R +GA I     +S GVI
Sbjct: 168 GELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVI 227

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 228 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVI 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP +V  ++ +   E  I+ E Y    D   I+  + I A   
Sbjct: 288 PDITFELAKNNEEMYLFSPYDVEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREF 345

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +S+ E         
Sbjct: 346 FQVLAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNSATEYNDDLSYRH 403

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+      +  D      TI TA+R L  V D+ N  ++   +K N  
Sbjct: 404 IGKDISCNLGSLNIA-----HTMDSPDFGKTIETAIRGLTAVSDMSNIRSVPSIEKGNQE 458

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y S EA++  +     + +HAI AS +LA ER   +  F
Sbjct: 459 SHAIGLGQMNLHGYLARERIFYGSEEALDFTNIYFYNVVYHAIRASNQLAMERGSYFKGF 518

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNC 763
             S +  G +    I        A+VR+  A   ++  ++  W  L++ V   G+ N N 
Sbjct: 519 DQSTYASGHYFTKYIEQGWQPKTAKVRELFATAGISIPNQQDWTALRQSVMEHGIYNQNL 578

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 579 QAVPPTGSISYINHSTSSIHPIISPIEIRK------------------------EGKIGR 614

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  S 
Sbjct: 615 VYYPA------PYMTNDNLEYYHDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTAST 668

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 669 RDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 704


>gi|238794432|ref|ZP_04638042.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238726227|gb|EEQ17771.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 693

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/732 (25%), Positives = 306/732 (41%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     +EEG   + + E   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKLDYLVEEGYYEKEVLE-RY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSFIKGLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
                  A E    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 120 NP---TLAQELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYRAMVDDKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+      +  D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIA-----HTMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
           EA++  +     + +HA+ AS +LA ER   +  F  S +  G +    I    + +   
Sbjct: 468 EALDFTNIYFYTVVYHALRASNQLAIERGKHFKGFDESDYASGTYFTKYIEQRWQPKTAK 527

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 + A+    +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VQALFAQAAIVLPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  S + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKAQIYAWKKGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|197284314|ref|YP_002150186.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|194681801|emb|CAR41038.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           HI4320]
          Length = 708

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/742 (25%), Positives = 320/742 (43%), Gaps = 84/742 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEEGV 264
           +Y  + A   +  L  E     + K + ATHH  +              E     +++  
Sbjct: 9   DYHALNA---MLNLYDEQGNIQFDKDKLATHHFFRQHVNQNTVFFHDLKEKLDFLVQQHY 65

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               + E   DF  +       Y + F F+ +LG    Y  Y L   +G R  E  +   
Sbjct: 66  YEAQVLE-QYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRV 124

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+ LA   T   K A    + + S  F  +TPT  N G  +  +L SCFL  + D++
Sbjct: 125 CMVALTLAQGNT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNM 181

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ
Sbjct: 182 ESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQ 241

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 242 LGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMY 301

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ +   E  I+ E Y    +  EI+  +KI A A ++ +  + FE+G+P+
Sbjct: 302 LFSPYDVERVYGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPY 359

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 360 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIA 417

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A T+  A+R L +V  +    ++   +K N    AIGLG M     L
Sbjct: 418 M-----AMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYL 472

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     ++++A+ AS +LA E    +  F+ S +  G +    +
Sbjct: 473 AREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYL 532

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +I+ I   
Sbjct: 533 SKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHS 592

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 593 TSSIHPIVAPIEIRK------------------------EGKIGRVYYPA------PFMT 622

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           ++ +  +  A+EI    +I++ ++  + IDQ  SL L+  DE + + ++     AW  G+
Sbjct: 623 NENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGI 682

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R  T++  + +KG 
Sbjct: 683 KTLYYIRIRQ-TALAGTEIKGC 703


>gi|190893562|ref|YP_001980104.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium etli
           CIAT 652]
 gi|190698841|gb|ACE92926.1| ribonucleoside-diphosphate reductase protein, alpha subunit
           [Rhizobium etli CIAT 652]
          Length = 693

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/693 (26%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 40  EKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G  +  +L 
Sbjct: 99  KRYLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENVDEKIRIKTLSLGVVVPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y        I   +KI A   ++ +
Sbjct: 276 FELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVGDARISK-KKIKAREFFQVL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + E             
Sbjct: 334 AEIQFESGYPYIMFEDTVNRAN--PIDGRISMSNLCSEILQVSEASEYNDDLSYKHLGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++   ++   +K N    AI
Sbjct: 392 ISCNLGSLNIAA-----AMDSADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  +  F+ S 
Sbjct: 447 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSK 506

Query: 716 WDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +         +        + D+  ++  ++  W ELK  V   G+ N N  A+ 
Sbjct: 507 YACGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQDDWAELKTAVMASGLYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 567 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 602

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 603 A------PFMTNDNLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 656

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +  + ++G 
Sbjct: 657 KAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 688


>gi|159184147|ref|NP_353104.2| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|159139482|gb|AAK85889.2| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 693

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/693 (26%), Positives = 302/693 (43%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 40  EKLDYLVTEGYYEQEVLD-QYSFNFVRDLYDEAYSRKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
            R  E  +     VA+ LA  +   E+ A +  + + S  F  +TPT  N+G +   +L 
Sbjct: 99  KRYLERYEDRVCMVALALARGD---EQLARDLMDEIISGRFQPATPTFLNAGKKSRGELV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y        I+  +KI A   ++ +
Sbjct: 276 FELARNNEDMYLFSPYDVERVYGVPLTEISVT-EKYHEMVADSRIRK-KKIKAREFFQVI 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------T 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + E             
Sbjct: 334 AEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVSEASEFNADLSYSHMGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ +       D      TI T++R L  V D++   ++   +K N    AI
Sbjct: 392 ISCNLGSLNIAS-----AMDSADFGKTIETSIRALTAVSDMSHISSVPSVEKGNDASHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E ++  +     +++HAI AS  LA ER  ++  F+ S 
Sbjct: 447 GLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVTYHAIRASNRLAVERGQSFKGFENSK 506

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               + ++ ++  +   ++  W  LK+ V   G+ N N  A+ 
Sbjct: 507 YASGDYFDKYTDREWLPATEKVRDLFEKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 567 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 602

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 603 ASYLSN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 656

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 657 RAQIYAWRRGIKTIYYIRLRQMA-LEGTQVQGC 688


>gi|323487826|ref|ZP_08093084.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323398560|gb|EGA91348.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 761

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/767 (29%), Positives = 365/767 (47%), Gaps = 104/767 (13%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           E +L+++   +   +P++  V A      L ++       + ++ +  E    + +    
Sbjct: 45  EQSLLYALNHITMDQPDWTYVAAELYASDLYKKAA-----EHREYSASEKYGDFYKLVHE 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
             + G+ ++ L  S    ++  L  +++ ERD  F Y+GL +L DRY      G   E+P
Sbjct: 100 LTQVGIYSKELLFSYSQEEITELGQEIEPERDLLFNYIGLFLLADRYLAKDYEGRLFELP 159

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  F+ +AM L   E ++++     E Y  +S  +   +TPTL N+G    QLSSCF+ T
Sbjct: 160 QERFLVIAMTLMQNEPKEQRLELVKEAYWAMSHLYMTVATPTLSNAGKSFGQLSSCFIDT 219

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+    + A L+K  GG+G  +  VR LG+ I      S GV+P++++ NDTA
Sbjct: 220 VDDSLDGIYLNNWDIARLSKDGGGIGIYYGKVRALGSDIKKFKDNSSGVVPWIRLLNDTA 279

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           V+V+Q G+R+GAV  YL+ +H D+   FLDL+ N GD+RR+ HD+ T   IPDLFM+R+ 
Sbjct: 280 VSVDQLGQRQGAVAIYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVSIPDLFMERLQ 339

Query: 495 QN-------AGWTLFSPDEVS-------------DLHDLYGKEFEIAYENYERQADRGEI 534
           +          W  F P +V               L D Y ++    + +  ++A    +
Sbjct: 340 EKDENGRSIGEWHTFCPHQVKRVMGWKDANGNALGLEDFYDEKDTKYFSDKYQEAVDHLL 399

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-----VGVVHSSNLCTEIT 589
              +   A+ +  +++    ETG P++ ++D  N ++P +H     +  ++ SNLCTEI 
Sbjct: 400 LPRKTYRAMEIMARIMVSQLETGTPYMFYRDEVNRQNPNKHTRGRGLTSIYCSNLCTEIM 459

Query: 590 LNSS--------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
            N S                      +  VCNL SINL     +       L   +    
Sbjct: 460 QNMSATTIVKEYTDEDGNLVMIRKPGDFVVCNLSSINLPRAVKSGV-----LERLVPIQT 514

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N  ++ +A+ +N  +RAIGLG  G+   L L  I + S +AVE AD+  E 
Sbjct: 515 RMLDNVIDLNTISVGQAEVTNKKYRAIGLGTFGWHHLLALEGIHWESEKAVEFADKLYEE 574

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I++  I AS++LA+E+GA+S F GS W  G +                    +   W++L
Sbjct: 575 IAYQTIRASMQLAEEKGAFSQFSGSEWHTGEY--------------FERRNYTSERWNDL 620

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++V T G+RN   MA+AP ++ A I G +  IDP Y   Y +   +  F V    L  +
Sbjct: 621 QQQVATTGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEYAEEKKNFKFKVTAPDL--D 678

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D +                              +   +D  W I   + RQ+ IDQ
Sbjct: 679 HHTYDFYR----------------------------RSRHVLDQKWSIRQNAARQRHIDQ 710

Query: 870 AQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + S N Y       K+L  ++ +AW   LKTTYY+RS S   +E+  
Sbjct: 711 SISFNFYVPHTIKAKELLDLHLEAWKQNLKTTYYVRSTSQAEIEECE 757


>gi|255028523|ref|ZP_05300474.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes LO28]
          Length = 620

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/661 (34%), Positives = 326/661 (49%), Gaps = 78/661 (11%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETE--KEKR 338
              +  E+D  F Y GL +L  RY    +  +  E+PQ  ++ +A+ L   E +  + K 
Sbjct: 2   GKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKL 61

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ G
Sbjct: 62  VEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGG 121

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D
Sbjct: 122 GVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKD 181

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV      Y ++F
Sbjct: 182 IESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF 241

Query: 519 -------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                      E YE      E    + + A+ + ++++    ETG+P++ ++D  N  +
Sbjct: 242 YDESKGEGTFREKYEELVAD-ETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMN 300

Query: 572 PQQHVGVVHSSNLCTEITLNSSS-------------------EETAVCNLGSINLLAHFA 612
           P +H G+V+SSNLCTEI  N S                     +  VCNL S+NL     
Sbjct: 301 PNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVV 360

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +     L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L +I
Sbjct: 361 AEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNI 417

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W+ G +           
Sbjct: 418 AWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEY----------- 466

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
               A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +
Sbjct: 467 ---FARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYE 523

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                   V+   L                          N+   P         A+++D
Sbjct: 524 EKKDYRRPVIAPDL--------------------------NLSTYP----YYEKGAYKVD 553

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               +    RRQ+ +DQ+ S N Y+       KL  ++  AW  GLKTTYY+RS      
Sbjct: 554 QFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVE 613

Query: 912 E 912
           E
Sbjct: 614 E 614


>gi|227358545|ref|ZP_03842870.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
 gi|227161256|gb|EEI46330.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
          Length = 714

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 190/742 (25%), Positives = 320/742 (43%), Gaps = 84/742 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEEGV 264
           +Y  + A   +  L  E     + K + ATHH  +              E     +++  
Sbjct: 15  DYHALNA---MLNLYDEQGNIQFDKDKLATHHFFRQHVNQNTVFFHDLKEKLDFLVQQHY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               + E   DF  +       Y + F F+ +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YEAQVLE-QYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERYLERYEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+ LA   T   K A    + + S  F  +TPT  N G  +  +L SCFL  + D++
Sbjct: 131 CMVALTLAQGNT---KLATHLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 248 LGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEDMY 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ +   E  I+ E Y    +  EI+  +KI A A ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVERVYGVPMSEISIS-EKYTEMVNNAEIRK-KKIKARAFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDISCNLGSMNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A T+  A+R L +V  +    ++   +K N    AIGLG M     L
Sbjct: 424 M-----AMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     ++++A+ AS +LA E    +  F+ S +  G +    +
Sbjct: 479 AREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEYFDKYL 538

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +I+ I   
Sbjct: 539 SKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSISYINHS 598

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 599 TSSIHPIVAPIEIRK------------------------EGKIGRVYYPA------PFMT 628

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           ++ +  +  A+EI    +I++ ++  + IDQ  SL L+  DE + + ++     AW  G+
Sbjct: 629 NENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIYAWRKGI 688

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R  T++  + +KG 
Sbjct: 689 KTLYYIRIRQ-TALAGTEIKGC 709


>gi|162420596|ref|YP_001607866.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|162353411|gb|ABX87359.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
          Length = 716

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/757 (24%), Positives = 318/757 (42%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 62

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     IEEG   + + +   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 63  ----EKIDYLIEEGYYEKEVLD-QYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLK 117

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA   T  +  A E    + S  F  +TPT  N G  + 
Sbjct: 118 TFDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQR 174

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVI
Sbjct: 175 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVI 234

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 235 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVI 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP ++  ++ +   E  I+ E Y    D   I+  + I A   
Sbjct: 295 PDITFELAKNNEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNAPTEYHEDLSYRR 410

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D      +I  A+R L  V ++ N  ++   +K N  
Sbjct: 411 IGKDISCNLGSLNIAQ-----VMDSPDFGKSIEIAIRGLTAVSEMSNIRSVTSIEKGNQE 465

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F
Sbjct: 466 SHAIGLGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGF 525

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             S +  G F    I          +  +  +  +   ++  W  L++ V   G+ N N 
Sbjct: 526 DESDYASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNL 585

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 586 QAVPPTGSISYINHSTSSIHPIVSPIEIRK------------------------EGKIGR 621

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 622 VYYPA------PYMTNDNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATT 675

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 RDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 711


>gi|148264309|ref|YP_001231015.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           uraniireducens Rf4]
 gi|146397809|gb|ABQ26442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 742

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 178/658 (27%), Positives = 299/658 (45%), Gaps = 81/658 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSS 348
             L +L  RY      G  +E P   F RVA  +A+         +    A +FY ++++
Sbjct: 15  NALTVLEKRYLKRDKEGKVLETPVDMFRRVAESIAVANARFDQKADLAALADKFYAMMTA 74

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R
Sbjct: 75  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFEAVKYTALIHKSGGGTGFSFSRLR 134

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  +  
Sbjct: 135 PANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMCKA- 193

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+R+ ++ N +  I + FMK V  +  + + +P                     E+ 
Sbjct: 194 ---DQRQLNNFNISVGITEAFMKAVDADTDYNIVNPRSG------------------EKA 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ++A  ++ +++   +E G P I F D  N  +P  H+G + S+N C E 
Sbjct: 233 GI---------LNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPCGEQ 283

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL     N + ++++L   I+ AV  LDNVI++N + +E+   
Sbjct: 284 PLLPYES----CNLGSINLGKMVQNGEVNWERLKEVIQLAVNFLDNVIEVNNYPLEQIDT 339

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
              ++R IGLG+MG+   L LL IPY S +A+E+ ++ M+FI+    +ASVELA+ RG +
Sbjct: 340 MTRSNRKIGLGVMGWADMLILLGIPYNSMKAIELGEKVMKFINDEGHAASVELAKTRGTF 399

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +FKGS++D                                        +RN+    IAP
Sbjct: 400 PNFKGSVFDAPG----------------------------------KGPIRNATVTTIAP 425

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  ++P +   +V+  M  +    VN       K +  + E ++  +  H
Sbjct: 426 TGTISIIANASSGVEPLFAVSFVRQVMDKNILLEVNPIFEEIAKAQGFYSEELMKKIAEH 485

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            G++ +I  IP+ ++ I  TA +I P   I   +  QK+ D A S  + + +  + + ++
Sbjct: 486 -GTVHDIPEIPEAVRNIFVTAHDITPEVHIAMQAAFQKYTDNAVSKTVNFPNSATFEDVE 544

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            +YR A+    K     R  S      ST K  +     V  T     +H    P + 
Sbjct: 545 KVYRLAYESNCKGVTIYRDGSRDEQVLSTGKKEETPQ--VHPTGEEKRSHKRERPKAL 600


>gi|238796651|ref|ZP_04640157.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238719382|gb|EEQ11192.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 693

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 175/675 (25%), Positives = 290/675 (42%), Gaps = 70/675 (10%)

Query: 272 SMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGL 328
              DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ L
Sbjct: 57  DQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTL 116

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGAL 387
           A    +    A E    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++
Sbjct: 117 AAGNPQ---LARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSI 173

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
                L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA
Sbjct: 174 NSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGA 233

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V
Sbjct: 234 GAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDV 293

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             ++ +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  
Sbjct: 294 EQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTV 351

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQ 615
           N  +     G ++ SNLC+EI   +S  E               CNLGS+N+      + 
Sbjct: 352 NRAN--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRQIGKDISCNLGSLNIA-----HT 404

Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      +I TA+R L  V D++   ++   +K N    AIGLG M     L    I Y
Sbjct: 405 MDSPDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFY 464

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S EA++  +     +++HAI AS  LA ER   +  F  S +  G +    +    + +
Sbjct: 465 GSEEALDFTNIYFYTVAYHAIRASNLLAIERGCHFKGFDESTYASGSYFTKYVEQRWQPK 524

Query: 734 D--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    +  ++   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 525 TAKVQALFADAGIHIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPI 584

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + ++                         E  I  + Y          + +D  + +
Sbjct: 585 VSPIEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYY 614

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R
Sbjct: 615 QDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKRGIKTIYYIR 674

Query: 905 SRSATSVEKSTLKGV 919
            R    +E + ++G 
Sbjct: 675 LRQMA-LEGTEVEGC 688


>gi|116253996|ref|YP_769834.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258644|emb|CAK09748.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 707

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/693 (26%), Positives = 299/693 (43%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y + F F  +LG    Y  Y L   +G
Sbjct: 54  EKLDYLVTEGYCEQEVLD-QYSFNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 112

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E  A +    + S  F  +TPT  N+G  +  +L 
Sbjct: 113 KRYLERYEDRICMVALALARGD---EALARDMVEEIISGRFQPATPTFLNAGKKQRGELV 169

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 170 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMK 229

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 230 LLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDIT 289

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y   AD   I   +KI A   ++ +
Sbjct: 290 FELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMADDARISK-KKIKAREFFQVL 347

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + E             
Sbjct: 348 AEIQFESGYPYIMFEDTVNRAN--PIAGRISMSNLCSEILQVSEASEYHDDLSYKHLGKD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++   ++   +K N    AI
Sbjct: 406 ISCNLGSLNIAA-----AMDSADFGKTIETSIRALTAVSDMSHISSVPSIEKGNDESHAI 460

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  +  F+ S 
Sbjct: 461 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSK 520

Query: 716 WDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       L E        + +   ++  ++  W  LKK V   G+ N N  A+ 
Sbjct: 521 YASGEYFDKYTDRLWEPATEKVKALFETADIHIPTQEDWAALKKLVMASGLYNQNLQAVP 580

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 581 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 616

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 617 A------PFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 670

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +  + ++G 
Sbjct: 671 KAQIHAWKKGIKTIYYIRLRQMA-LSGTEVQGC 702


>gi|238790128|ref|ZP_04633905.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238721797|gb|EEQ13460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 693

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/732 (25%), Positives = 309/732 (42%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     +EEG   + + E   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKLDYLVEEGYYEKEVLE-RY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           +F  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  NFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
             +  +  VE    ++S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 120 NPQVARDLVEE---MTSGRFQPATPTFLNCGKNQRGELVSCFLLRMEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVELV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPMSEISIS-EKYREMVDDKRIRKSK-IKAREFFQILAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+      +  D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNSPTEYNDDLSYHHIGKDISCNLGSLNIA-----HTMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GL 728
           EA++  +     + +HAI AS  LA ER   +  F  S +  G +    +          
Sbjct: 468 EALDFTNIYFYTVVYHAIRASNLLAIERGSHFKGFDESDYASGRYFTKYVEQSWQPKTAK 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  +   ++  W++L+  V   G+ N N  AI PT +I+ I   + SI P    
Sbjct: 528 VQALFAKSGIAIPNQQDWEKLRNSVMEHGIYNQNLQAIPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + ++  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNENLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWQKGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|295395247|ref|ZP_06805455.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972009|gb|EFG47876.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 720

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/750 (24%), Positives = 321/750 (42%), Gaps = 84/750 (11%)

Query: 208 TLIEKEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHHEMQCLYPEYF 256
           T+I +E +        +L  L            R+     + +           L  E  
Sbjct: 12  TIIREETDLDYHALNAML-NLYDENGRIQFERDRQAARQFFLQHVNNNTVFFHDL-AEKL 69

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI 314
              +E     + + +   DF+ +   +   Y + F F  +LG    Y  Y L   +G R 
Sbjct: 70  NYLVEHEYYEKEVLD-QYDFEFISELSKFAYSKKFRFQTFLGAFKFYTSYTLKTFDGKRY 128

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF 372
            E  +   + VA+ LA  + E    A      + +  F  +TPT  N+G  +  +L SCF
Sbjct: 129 LERFEDRVVMVALFLARGDRE---LARNLVEEIIAGRFQPATPTFLNAGKKQRGELVSCF 185

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  
Sbjct: 186 LLRIEDNMESIGRSINSALQLSKRGGGVAFSLTNIRESGAPIKKIENQSSGVIPVMKLLE 245

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 246 DSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQL 305

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +N    LFSP +V  ++ +   +  +  E Y+   D   I+  + I A   ++ +  +
Sbjct: 306 AKKNEDMYLFSPYDVEQVYGVPFSDISVT-EKYDEMVDDARIRKTK-IRAREFFQTLAEI 363

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVC 600
            FE+G+P+I ++D  N  +     G +  SNLC+EI   S + E               C
Sbjct: 364 QFESGYPYIMYEDTVNRAN--PIDGKITMSNLCSEILQVSEASEYNADLTYAHVGKDISC 421

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+         D D    T+ TA+R L  V D  N  ++   ++ N+   AIGLG
Sbjct: 422 NLGSLNIAM-----AMDSDDFGRTVETAIRGLTAVSDTSNISSVPSIERGNNMSHAIGLG 476

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
            M     L    I Y S E ++  +     +++HA+ AS+E+A+ERG A+  F+ S +  
Sbjct: 477 QMNLHGYLARESIHYGSEEGLDFTNMYFYTVAYHAVRASMEIAKERGVAFEGFERSKYAS 536

Query: 719 GVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G +               +A++ ++  ++  ++  W  L+  V T G+ N N  A+ PT 
Sbjct: 537 GEYFEKYTQQEWVPRTQKVADLFEKAGVHIPTQDDWAALRDDVATYGIYNQNLQAVPPTG 596

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + SI P    + ++                         E  I  + Y    
Sbjct: 597 SISYINNSTASIHPIASRIEIRK------------------------EGKIGRVYYPA-- 630

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + +D  + +  A+E+    +I++ +   K +DQ  SL L+  D  + + ++   
Sbjct: 631 ----PFMTNDNLEYYQDAYEVGYEKVIDTYAEATKHVDQGLSLTLFFKDTATTRDVNRAQ 686

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R    ++ + ++G 
Sbjct: 687 IYAWRKGIKTLYYIRIRQMA-LQGTEVEGC 715


>gi|209551074|ref|YP_002282991.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536830|gb|ACI56765.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 734

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 191/754 (25%), Positives = 311/754 (41%), Gaps = 86/754 (11%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLY 252
             L+   + +   L + E        R  L+K R   ++       +     H+      
Sbjct: 32  EALDYHALNAMLNLYDDE-------GRIQLDKDRMAAKQYFLQHVNQNTVFFHN-----L 79

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +
Sbjct: 80  REKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFD 138

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E  A +  + + S     +TPT  N+G  +  +L
Sbjct: 139 GKRYLERYEDRICMVALSLARGD---EALARDMVDEIISGRLQPATPTFLNAGKKQRGEL 195

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R   A I     +S G+IP +
Sbjct: 196 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREASAPIKQIENQSSGIIPVM 255

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 256 KLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDI 315

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +    N    LFSP +V  ++ +   E  +  E Y        I   +KI A   ++ 
Sbjct: 316 SFELARNNEDMYLFSPYDVERIYGVPFTEISVT-EKYREMVADARISK-KKIKAREFFQV 373

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + E            
Sbjct: 374 IAEIQFESGYPYIMFEDTVNRAN--PIAGRISMSNLCSEILQVSEASEYNDDLSYKHLGK 431

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+ A       D      TI T++R L  V D++   ++   +K N    A
Sbjct: 432 DISCNLGSLNIAA-----AMDSADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHA 486

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  +  F+ S
Sbjct: 487 IGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENS 546

Query: 715 LWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +               +  + D   +   ++  W  LK  V T G+ N N  A+
Sbjct: 547 KYASGEYFDKYTEQEWQPATEKVRALFDNAGIPVPTQEDWLALKTAVMTSGLYNQNLQAV 606

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 607 PPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYY 642

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 643 PA------PFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +  + ++G 
Sbjct: 697 NKAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 729


>gi|289523461|ref|ZP_06440315.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503153|gb|EFD24317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 740

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 193/664 (29%), Positives = 299/664 (45%), Gaps = 96/664 (14%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYN 344
           +F     ++L  RY L    G+ IE P+    RVA  +A  E        +E+ A +FY 
Sbjct: 10  SFSENATKVLERRYLLKDEKGNLIETPEDMLWRVASAIAKAEKAFGDEESEEEWANKFYE 69

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +++S  F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G ++
Sbjct: 70  MMASLDFLPNSPTLMNAGTPTAQLSACFVLPVGDSMDEIFDALKYTALVHKSGGGTGFNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +  T G + G + F+++ + T   V QGG R+GA    L   H DV +F+ 
Sbjct: 130 SSLRPYGDIVKSTKGVASGPVSFMELFDHTTDVVKQGGMRRGANMGILNADHPDVIKFVK 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +   G    +  + N +      FMK V  +  W L +P                    
Sbjct: 190 AKIEEG----KLKNFNISVGTTQKFMKAVLNDEEWELVNPRTGE---------------- 229

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V  K+ A  L+  +  M ++TG P I F D     +   ++G + ++N 
Sbjct: 230 -----------VVDKVGARNLFDLLCEMAWKTGDPGIIFLDKIEASNLTPNLGSITATNP 278

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C E  L         CNLGSINL        + D+ KL  T+R AVR LD+VI++N   I
Sbjct: 279 CGEQPLLPFES----CNLGSINLSNMVLPKGEIDWSKLERTVRIAVRFLDDVIEVNQFPI 334

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++      + R IGLG+MG+   L  L IPY S EA+ +A + M FI+      S  LA+
Sbjct: 335 KEIADMTMSTRKIGLGVMGWADVLLKLRIPYDSDEALNLARKVMSFIAKIGHEESARLAE 394

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG + ++KGS W++                                   K + MRN+  
Sbjct: 395 TRGPFPAWKGSRWEE-----------------------------------KGMLMRNATV 419

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF--TVVNSFLVNELKQRDLWDEAMI 821
             IAPT TI+ +  VS  ++P +   Y +    G+   T VN  L++ L++  L+ EA+I
Sbjct: 420 TTIAPTGTISLVAEVSSGVEPVFALAYRRKAFEGEANLTYVNEILLDALREERLYSEALI 479

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             L    GS+  ++ +PD LKK+  TA +I P W +   +  Q++ D A S  + +  E 
Sbjct: 480 E-LILERGSLKELD-LPDSLKKVFVTAHDISPEWHVRMQAAFQEYTDNAVSKTINMPHEA 537

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA-------------TSVEKSTLKGVDGKLNAVP 927
           S   +   Y  A+ +G K     R R               +S  K   KG+ GK    P
Sbjct: 538 SVDDVKKAYLLAYELGCKGITIFRDRCKEDQVLYIGTGEVPSSEVKEEPKGLAGKGYVKP 597

Query: 928 VTDP 931
              P
Sbjct: 598 RRRP 601


>gi|238750474|ref|ZP_04611975.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238711405|gb|EEQ03622.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 693

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/732 (25%), Positives = 309/732 (42%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H +Q    E     +EEG   + + +   
Sbjct: 14  DKDRLAARQ---------YFLQHVNQNTVFFHNLQ----EKLDYLVEEGYYEKEVLDK-Y 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
             +  +  VE    + S  F  +TPT  N G  +  +L SCFL  + D++  I  ++   
Sbjct: 120 NPQIARDLVEE---IISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V+ +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVAQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + L   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGLPLSEISIS-EKYRELVDDKRIRKSK-IKAREFFQVLAEIQFESGYPYMMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+      +  D 
Sbjct: 355 N--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSMNIA-----HTMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                +I TA+R L  V D++   ++   +K N    AIGLG M     L    I Y S 
Sbjct: 408 PDFGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS--------IGL 728
           EA++  +     + +HAI AS +LA ER   +  F  S +  G +               
Sbjct: 468 EALDFTNIYFYTLVYHAIRASNQLAIERGSYFKGFDESDYASGRYFTKYTEQSWLPKTAK 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VQALFAKSGIHIPNQQDWATLRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSP 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVEGC 688


>gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit
           [Organic Lake phycodnavirus 1]
          Length = 824

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 194/853 (22%), Positives = 363/853 (42%), Gaps = 97/853 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +      +  ++   V +      L  +    ++ +    ++D +  S ++  L
Sbjct: 2   IHVLKRNSKKEVLSYDKILERVNKFIVKYNLN-IQGSGLVLKVIDQLHDNIKTSQIDELL 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                ++     +Y+K+     +    +E   T+++          +    + +   ++E
Sbjct: 61  AEQCASMGTIHYDYSKLAGYICISNHHKETKRTLFESVNILC--TKKGYLSDNYYNIVKE 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
             K               L   + Y+R++  +Y G + L   Y +  +   IE  Q  +M
Sbjct: 119 HHK--------------ELETMIVYDRNYLIDYFGYKTLERAYLMRNDNMVIENIQHLWM 164

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+ +      K     + Y+ LS   F+ +TPTL+N+GT  PQLSSC+L  +  D + 
Sbjct: 165 RVAVQIHGNCLPK---VKDTYDGLSKKLFIHATPTLYNAGTTRPQLSSCYLLGMEEDSID 221

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A ++K++GG+G     VR  G  I GTNG S G++P L+V N+TA  V+QG
Sbjct: 222 GIFNTLRDCASISKWAGGIGLHIHNVRAKGTSILGTNGTSNGIVPMLRVFNNTARYVDQG 281

Query: 442 G-KRKGAVCAYLETW-------------HIDVEE-----F-------LDLRKNTGDDRRR 475
           G KR G+   YLE W             H D E      F       L +RK   D+   
Sbjct: 282 GGKRNGSFAMYLEPWHGDILEFLELRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWY 341

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFS--PDEVSDLHDLYGKEFEIAYE-------NYE 526
               +    + +++ +         + S    +     +L+    +   E         +
Sbjct: 342 LMCPHICKHLDNVYGEEFETLYESYVSSGQYLKKMKARELWFHILDSQMETGTPYMLYKD 401

Query: 527 RQADRGEIKVFRKISAVALWRKMLT-----------------------MLFETGHPWITF 563
               +   K    I +  L  +++                          F+   P + +
Sbjct: 402 ACNQKSNQKNIGTIKSSNLCCEIIEYSDKDESAVCNLASISLSSFVKKSKFKLNGPIVVY 461

Query: 564 KDPCNIRSPQ--QHVGVVH-SSNLCTEITLNSSSEETAVCN-LGSINLLAHFANNQFDYD 619
                         +  +  +  +  ++      +  A    +G  + +     + FDY+
Sbjct: 462 AKENCKWCDYLKSFLDSIKINYEVVMDVRQTMYPQLYAGDKKIGGFSDVISLFKSTFDYN 521

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L    +     L+ +ID+N +  +K ++SN  HR IG+G+ G      +L+I + S EA
Sbjct: 522 GLHKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQGLADVFAMLNIAFDSDEA 581

Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            EI     E +   ++  S+E+A+E+   Y+SFKGS   +G+   D   +          
Sbjct: 582 KEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGILQFDMWNVTP-------- 633

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             + R  W  LK+ +   G  NS CMA  PTA+ + I   ++  +P   N+Y +  ++G+
Sbjct: 634 --SKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNECFEPFTSNMYTRRTLAGE 691

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F V+N  L+ EL   ++W+ ++ +D+  + GSI +I  IPD +K  +   +E+    +++
Sbjct: 692 FMVINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDYIKAKYKIVWEMSMKTIMD 751

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            +  R  +I Q+QS+NL+++EP+ K L  ++  AW  GLKT  YYLR ++    ++ T+ 
Sbjct: 752 MSKDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTGMYYLRRKAKHHAQQFTVT 811

Query: 918 GVDGKLNAVPVTD 930
                   V    
Sbjct: 812 PEKEPTECVSCGS 824


>gi|119387082|ref|YP_918137.1| ribonucleoside-diphosphate reductase, alpha subunit [Paracoccus
           denitrificans PD1222]
 gi|119377677|gb|ABL72441.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Paracoccus denitrificans PD1222]
          Length = 708

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/751 (25%), Positives = 317/751 (42%), Gaps = 82/751 (10%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--LTTVYKKPQKATHHEMQCLYP 253
           ++L+   + +   L + E        R   +  R+        +        H +     
Sbjct: 8   AELDYHALNAMLNLYDGE-------GRIRFDADRKAARQYFLQHVNQNTVFFHSL----D 56

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS 312
           E     ++EG     + +       ++   D  Y R F F  +LG    Y  Y L     
Sbjct: 57  EKLGYLVDEGYYEAEVLD-QYPRAFLHRIWDAAYARKFRFPTFLGAFKYYTSYTLKTRDG 115

Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
           R  +E  +   + VA+ LA  +   E  A+ F   + S  F  +TPT  N+G +   +L 
Sbjct: 116 RRYLERYEDRVVMVALALARGD---EDLAMRFMEEILSGRFQPATPTFLNAGKKSRGELI 172

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K
Sbjct: 173 SCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNLREAGAPIKGIENQSSGVIPVMK 232

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 233 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 292

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++ L   E  +  E Y    D   I+  +KI+A A ++ +
Sbjct: 293 FELAKRNEDMYLFSPHDVEKVYGLPFSEISVT-EKYAEMVDDKRIRK-KKINARAFFQTL 350

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------T 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI   + + E             
Sbjct: 351 AEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVNEASEFDEDLGYRHLGTD 408

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D     +T+  A+R L  V +++    +   ++ N    A+
Sbjct: 409 ISCNLGSLNIAA-----TMDGPDFGATVEAAIRALTAVSEMSAIEAVPSIRRGNDEAHAV 463

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPE VE        +++HAI AS  LAQE+   +  F  S 
Sbjct: 464 GLGQMNLHGFLARERIHYGSPEGVEFTSVYFAAVAYHAIRASNLLAQEKGRTFKDFDKSK 523

Query: 716 WDQGVFPIDSIGLLA------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G F    +            R    ++  +R  W  L++ V   G+ N N  A+ PT
Sbjct: 524 YADGSFFDKYVAQDWLPTLPDVARVFEGVSLPTREDWAALRESVMRHGLYNRNLQAVPPT 583

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         E  I  + Y   
Sbjct: 584 GSISYINNSTSSIHPIVAKIEIRK------------------------EGKIGRVYYPAA 619

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
            + N      +    +  A+EI P  +I++ +   + +DQ  SL L+   E + + ++  
Sbjct: 620 FMSN------ENLDYYRDAYEIGPEAIIDTYAAATEHVDQGLSLTLFFPAEATTRDINRA 673

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              AW  G+KT YY+R R  T++E + ++G 
Sbjct: 674 QIYAWKKGIKTIYYIRLRQ-TALEGTEVQGC 703


>gi|222102711|ref|YP_002539750.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
 gi|221739312|gb|ACM40045.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
          Length = 693

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 182/683 (26%), Positives = 293/683 (42%), Gaps = 70/683 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     ++EG   + + +    F+ V    D  Y + F F  +LG    Y  Y L   +G
Sbjct: 40  EKLDYLVDEGYYEQAVLD-QYAFNFVRDLFDHAYVKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA      E  A +  + + S  F  +TPT  N+G  +  +L 
Sbjct: 99  KRYLERYEDRICMVALTLAQG---NEALARDMVDEIISGRFQPATPTFLNAGKKQRGELV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRMEDNMESIARGINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y        I+  +KI A   ++ +
Sbjct: 276 FELAKNNEDMYLFSPYDVERVYGVAFSEISVT-EKYREMVADSRIRK-KKIKARDFFQVL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                +  + 
Sbjct: 334 AEIQFESGYPYIMFEDTVNRAN--PIAGRISMSNLCSEILQVSDVSTYNDDLSYKTMGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI TA+R L  V D++   ++   +K N    AI
Sbjct: 392 ISCNLGSLNIAA-----VMDSSDFGRTIETAIRALTAVSDMSHISSVPSIEKGNDDSHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E ++  +     +++HAI AS  +A ERG  +  F+ S 
Sbjct: 447 GLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTVTYHAIRASNRIAAERGTSFKGFENSK 506

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +AE+ +   ++  ++  W  LK+ V   G+ N N  A+ 
Sbjct: 507 YASGEYFDKYTQTEWLPATRRVAELFETAGISIPTQEDWLALKEVVMASGLYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 567 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 602

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 603 AAFMSN------DNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 656

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909
                AW  G+KT YY+R R   
Sbjct: 657 RAQIYAWKKGIKTIYYIRLRQMA 679


>gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 167/467 (35%), Positives = 262/467 (56%), Gaps = 18/467 (3%)

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q       V + + A  LW  +
Sbjct: 1   MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGR-----VRKVVKAQQLWYAI 55

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  
Sbjct: 56  IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115

Query: 610 HFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           +    + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  
Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +
Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNV 235

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                       T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N
Sbjct: 236 TP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 285

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T 
Sbjct: 286 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 345

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R 
Sbjct: 346 WEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRP 405

Query: 908 ATSVEKSTL-KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           A +  + TL K        V   +     ++  +  S  +  EC +C
Sbjct: 406 AANPIQFTLNKERLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 452


>gi|241206479|ref|YP_002977575.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860369|gb|ACS58036.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 716

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/693 (27%), Positives = 300/693 (43%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y + F F  +LG    Y  Y L   +G
Sbjct: 63  EKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 121

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G  +  +L 
Sbjct: 122 KRYLERYEDRICMVALALARGD---ESLARDMVDEIISGRFQPATPTFLNAGKKQRGELV 178

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 179 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKHIENQSSGIIPVMK 238

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 239 LLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDIT 298

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y   AD   I   +KI A   ++ +
Sbjct: 299 FELARNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMADDARISK-KKIKAREFFQVL 356

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N  +     G V  SNLC+EI   S + E             
Sbjct: 357 AEIQFESGYPYIMFEDTVNRAN--PIAGRVSMSNLCSEILQVSEASEYNDDLSYKHLGKD 414

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++   ++   +K N    AI
Sbjct: 415 ISCNLGSLNIAA-----AMDSVDFGKTIETSIRALSAVSDMSHISSVPSIEKGNDESHAI 469

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E V+  +     ++++AI AS  LA ERGA +  F+ S 
Sbjct: 470 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYYAIRASNLLAVERGASFKGFENSK 529

Query: 716 WDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       L E   E          ++  ++  W  LKK V   G+ N N  A+ 
Sbjct: 530 YASGDYFDKYTDRLWEPATERVKALFETSGIHIPTQEDWVALKKAVMASGLYNQNLQAVP 589

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 590 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 625

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 626 A------PFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +  + ++G 
Sbjct: 680 KAQIHAWKKGIKTIYYIRLRQMA-LSGTEVQGC 711


>gi|327399024|ref|YP_004339893.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
 gi|327181653|gb|AEA33834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
          Length = 725

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 182/644 (28%), Positives = 287/644 (44%), Gaps = 81/644 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEF 342
                  L +L  RY     +G+ IE P+    RVA  +A  +          EK   EF
Sbjct: 1   MRLSENALIVLKSRYLQKDSDGNIIETPEQLIERVAKAIAKADENYSATKEEIEKTTNEF 60

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +++S   F+ +TPTL N+G    QLS+CF+  + D +  IF A++  A++ K  GG G 
Sbjct: 61  MDVMSELKFLPNTPTLVNAGRPLGQLSACFVLPINDSMDSIFDAVKATALIHKSGGGTGF 120

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R     +  T G S G + F+KV +    A+ QGG R+GA    L   H D+ +F
Sbjct: 121 SFSRLRPKNDIVSSTMGVSSGPVSFMKVFDCATEAIKQGGVRRGANMGILRVDHPDILDF 180

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +   G+      + N +  I + F+  +  +  + L +P                  
Sbjct: 181 IHCKDKEGEFS----NFNISVAITNKFLDALKNDEEYELINP------------------ 218

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHS 581
                       +V  K+ A  +W ++     ++G P I F D  N + P  + VG + S
Sbjct: 219 ---------RNKEVVGKLKASFVWDEIAKSAHKSGEPGIIFIDRINEKHPLSKEVGEIES 269

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           +N C E  L         CNLGSINL         D+D L  T+ TAV  LDNVID+N +
Sbjct: 270 TNPCGEQPLLPFES----CNLGSINLGKFVKGKSIDWDNLKKTVFTAVHFLDNVIDVNIY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            ++K +++   +R +GLG+MGF   L  L IPY S EA+++A++ M FI   +  AS EL
Sbjct: 326 PLKKIEENTKKNRKVGLGVMGFADMLIDLGIPYDSKEAIKLAEDVMCFIQKISKEASSEL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A++RG + ++K S++ +   P                                   MRN+
Sbjct: 386 AKKRGNFPNYKYSIYSKENIP-----------------------------------MRNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAM 820
               IAPT +I+ I   S  I+P +   Y K  + G     V   L N LK R ++ E +
Sbjct: 411 TTTTIAPTGSISMIADASSGIEPIFALAYYKQVLDGKRLPYVYERLFNVLKDRGIYTEKL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
              +  + GS+  IE IP+D++K+  TA +I     I+  +  QK+ D A S  + +   
Sbjct: 471 AERIIDNRGSLKGIEEIPEDIRKLFVTAMDITYKAHIDIQAAFQKYTDNAVSKTINMPNS 530

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +   +   Y  A+  GLK     R  S         K  + KL
Sbjct: 531 ATVVDVKEAYNYAYKNGLKGITVYRDGSRQEQVLVVAKKEEKKL 574


>gi|157371958|ref|YP_001479947.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323722|gb|ABV42819.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 714

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 186/757 (24%), Positives = 312/757 (41%), Gaps = 88/757 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + S L+   + +   L + E     +  ++ AR              +        H ++
Sbjct: 10  TTSALDYHSLNAMLNLYDAEGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLE 60

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     +EEG   + +     DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 61  ----EKLRYLVEEGYYEQSVLA-QYDFAFIKQLFQQAYAKKFRFETFLGAFKYYTSYTLK 115

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-H 365
             +G R  E  +     VAM LA  +T     A +    + S  F  +TPT  N G +  
Sbjct: 116 TFDGKRYLERYEDRVCMVAMTLAAGDT---ALAQDLVEEMISGRFQPATPTFLNCGKQQR 172

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  A+     L+K  GG+    T +R +GA I     +S GVI
Sbjct: 173 GELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVI 232

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 233 PIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 292

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +    N    LFSP +V  ++ +   E  ++ E Y    D   I+  R I+A   
Sbjct: 293 PDITFELAKNNEEMYLFSPYDVEQVYGVPFSEISVS-EKYREMVDDKRIRKSR-INAREF 350

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI                 
Sbjct: 351 FQVLAEIQFESGYPYMMFEDTVNREN--PIAGRINMSNLCSEILQVNRASTYHDDLSYDQ 408

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652
             +   CNLGS+N+         D       + TA+R L  V D++   ++    + N +
Sbjct: 409 VGKDISCNLGSLNIA-----KTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRS 463

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y S E ++  +     +++HAI AS +LA ER  A+  F
Sbjct: 464 SHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYAVAYHAIRASNQLAIERGSAFGGF 523

Query: 712 KGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G +                  +  +  +    R  W  L++ V   G+ N N 
Sbjct: 524 EDSTYASGEYFSKYTERDWLPQTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNL 583

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 584 QAVPPTGSISYINNSTSSIHPIVSRIEIRK------------------------EGKIGR 619

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + 
Sbjct: 620 VYYPA------PYMTNDNLEYYQDAYDIGPEKIIDTYAAASQHVDQGLSLTLFFRDTATT 673

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 674 RDINRAQIYAWRKGIKTIYYIRLRQMA-LEGTEVQGC 709


>gi|259417280|ref|ZP_05741199.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346186|gb|EEW58000.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
          Length = 710

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/752 (25%), Positives = 322/752 (42%), Gaps = 80/752 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +DL+   + +   L + E N      R    +         +        H +     E
Sbjct: 7   TADLDYHALNAMLNLYDDEGNIQFDADRMAARQ-----YFLQHVNQNTVFFHSL----DE 57

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS- 312
                +E+G     + +     +      D  Y + F F  +LG    Y  Y L      
Sbjct: 58  KLGYLVEKGYYEPEVLDQYSR-NFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQ 116

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
             +E  +   +  A+ LA  +   EK A++  + +    F  +TPT  N+G +   +  S
Sbjct: 117 RYLERYEDRVVMNALTLARGD---EKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVS 173

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+
Sbjct: 174 CFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKL 233

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 234 LEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 293

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   +N    LFSP +V  ++     E  +  E Y    D  +I+  +KI+A A ++ + 
Sbjct: 294 QLAKKNEDMYLFSPHDVEKVYGQAFSEISVT-EKYHEMVDNPQIRK-KKINARAFFQTIA 351

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TA 598
            + FE+G+P+I F+D  N  +     G +  SNLC+EI   + + E              
Sbjct: 352 EIQFESGYPYIMFEDTVNAAN--PIAGRIAMSNLCSEILQVNEASEFNDDLSYAQMGTDI 409

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D   LA T+ TA+R L+ V +++   ++   +K N    AIG
Sbjct: 410 SCNLGSMNIAR-----AMDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAIG 464

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716
           LG M     L    I Y S E V+  +     + +HA+SAS  LA+E+ A +  F+ S +
Sbjct: 465 LGQMNLHGYLARERIHYGSAEGVDFTNIYFCTVLYHALSASNALAKEKKAKFKGFEDSAY 524

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    +G         + E+ +   +   +R  W+ L+ +V   G+ N N  A+ P
Sbjct: 525 ADGSFFEKYVGQDWLPETDRVKELFEAAGIEIPTRKDWEALRDKVMKHGLYNRNLQAVPP 584

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++                         E  I  + Y  
Sbjct: 585 TGSISYINYATSSIHPITAKIEIRK------------------------EGKIGRVYYPA 620

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                   + +D  + +  A++I P  +I++ +   + +DQ  SL L+   E S + ++ 
Sbjct: 621 ------PYMTNDNLEYYRDAYDIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINR 674

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R   ++E + ++G 
Sbjct: 675 AQIYAWKKGIKTIYYIRLRQ-QALEGTEVEGC 705


>gi|154278713|ref|XP_001540170.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
 gi|150413755|gb|EDN09138.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
          Length = 508

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/522 (33%), Positives = 268/522 (51%), Gaps = 37/522 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL  + V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQT--------KKQFSSVIDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E   R +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVE---RVIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE++         + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464

Query: 619 DKLAS---------------TIRTAVRVLDNVIDINCHTIEK 645
            KL                  +   +R+L  + D +   +++
Sbjct: 465 GKLHELRKRNEATSAIVPLLVVYRVLRMLSLLCDFHLIPLKQ 506


>gi|302595802|sp|P0CG99|RIR1A_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1
 gi|302595803|sp|P0CH00|RIR1B_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 2;
           AltName: Full=Ribonucleotide reductase R1 subunit 2
          Length = 722

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 180/694 (25%), Positives = 298/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     IE     R + +     D +    D  Y + F F  +LG    Y  Y L   +
Sbjct: 68  DEKLDYLIENEYYEREVLDQYSR-DFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 126

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +TE    A +  + +    F  +TPT  NSG  +  + 
Sbjct: 127 GKRYLERFEDRVVMVALTLAAGDTE---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEP 183

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 184 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIM 243

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 244 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 303

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI+A   ++ 
Sbjct: 304 TFELAKKNEDMYLFSPYDVERVYGVPFADVSVTEKYYEMVDDARIR--KTKINAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+  E            
Sbjct: 362 LAELQFESGYPYIMFEDTVNRSN--PIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 419

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 420 DISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + +          ++  ++  W +LK+ V+  G+ N N  A+
Sbjct: 535 KYASGEFFDKYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 595 PPTGSISYINHSTSSIHPVASKIEIRK------------------------EGKIGRVYY 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 PA------PYMTNDNLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 684

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 685 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 717


>gi|292490775|ref|YP_003526214.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579370|gb|ADE13827.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 1695

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/440 (53%), Positives = 306/440 (69%), Gaps = 4/440 (0%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +H  +      E   P++    P +    +VI+RNG VT FDPSKI+ A+ KAF+AVEG 
Sbjct: 2   LHGREQSPD-SESLDPTVRATAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLAVEGG 57

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S R+   ++ LT Q V    +  ++   VHIEDIQDQVE +LM+ G+HKI R YVL
Sbjct: 58  SAATSKRIHQTVEALTAQVVEACTRRLETGGTVHIEDIQDQVELALMRGGYHKIARAYVL 117

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREER+  RA  +         P L++ + DG ++  +  RL  I+EEAC  L +   + 
Sbjct: 118 YREERTRERAQAAAKTKKKAAEPPLQMTLADGRVVPLDKARLTRIIEEACQALPETQPQT 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+ET +N++DG++E D+E ALI S+RT IEKEP+Y+ V AR LL+ LRRE L+ ++   
Sbjct: 178 ILNETLRNLFDGVAEQDVERALIMSARTFIEKEPHYSYVAARLLLDSLRREALSFIHGAE 237

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             AT  EM   YPEYF  YI++G   +L+   +  +DL  L   L+ ERDF F YLGLQ 
Sbjct: 238 THATQGEMAERYPEYFAAYIKQGADLQLIDPRLTQYDLTRLGQALRPERDFEFTYLGLQT 297

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLA+ E E+E+R +EFY LLSSF FM STPTLFN
Sbjct: 298 LYDRYFIHSGGIRFELPQAFFMRVAMGLAINEVEREERTIEFYELLSSFDFMSSTPTLFN 357

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SG+  PQLSSC+LTTV DDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGK
Sbjct: 358 SGSLRPQLSSCYLTTVADDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGK 417

Query: 421 SQGVIPFLKVANDTAVAVNQ 440
           SQGV+PFLKVANDTAVAVNQ
Sbjct: 418 SQGVVPFLKVANDTAVAVNQ 437



 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 233/402 (57%), Positives = 288/402 (71%), Gaps = 10/402 (2%)

Query: 556  TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
                +    D           G++      TEITLN+S +E AVCNLGSINL  H   N 
Sbjct: 1301 NEDAYCLTVDSTT--HAWTVNGLI---TKNTEITLNTSDDEIAVCNLGSINLPQHLDENG 1355

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +  KL  TI TA+R+LDNVID N +++  A++SN  HR +GLGLMGFQ AL+ L +PYA
Sbjct: 1356 LNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPVGLGLMGFQDALYKLRLPYA 1415

Query: 676  SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            S  AVE AD SME IS++AI AS  LA ERG Y +F+GSLW +G+ PIDSIGLL + R  
Sbjct: 1416 SEAAVEFADRSMEAISYYAIKASSNLAGERGKYCTFEGSLWSKGILPIDSIGLLEQGRGG 1475

Query: 736  -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
             L  +RT  L WD L+++VKT+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSN
Sbjct: 1476 YLQQDRTQTLDWDGLREQVKTVGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSN 1535

Query: 795  MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +SG+FTV+N +LV +LK RDLWDE M++DLKY DGS+  I+RIP+DLK ++ATAFEIDP 
Sbjct: 1536 LSGEFTVINPYLVQDLKARDLWDEVMVNDLKYFDGSVQPIDRIPEDLKTLYATAFEIDPR 1595

Query: 855  WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT VEKS
Sbjct: 1596 WLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSLGATHVEKS 1655

Query: 915  TLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
            T+       LNAV    P         P +C+  D +CE CQ
Sbjct: 1656 TMTSDQVNTLNAVQSGSPQEP--ESEAPQACSILDPDCEACQ 1695



 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 120/154 (77%), Positives = 131/154 (85%)

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            TA  V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 808 TTAALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 867

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPDE  DLHDL G+ FE AY  YE +A  GEIK F+K  AV LWRKML+M
Sbjct: 868 VAEDGEWTLFSPDETPDLHDLVGQAFEEAYLRYEEKAACGEIKNFKKQRAVDLWRKMLSM 927

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLC 
Sbjct: 928 LFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCC 961


>gi|41409198|ref|NP_962034.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398018|gb|AAS05648.1| NrdE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 726

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/742 (25%), Positives = 307/742 (41%), Gaps = 78/742 (10%)

Query: 212 KEPNYAKVTARFLLEK------LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264
            E +Y  + A   L          ++VL       Q    + +      E     I E  
Sbjct: 24  DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 83

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
             R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 84  YEREVLDQYSR-NFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRV 142

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
           + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  +  SCFL  + D++
Sbjct: 143 VMVALTLAAGDTG---LAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNM 199

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 200 ESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQ 259

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 260 LGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMY 319

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ L   +  +  + YE   D        KI A   ++ +  + FE+G+P+
Sbjct: 320 LFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGYPY 377

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+ 
Sbjct: 378 IMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 435

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A TI  A+R L  V D     ++   ++ N+   AIGLG M     L
Sbjct: 436 -----KTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 490

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F     
Sbjct: 491 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 550

Query: 727 GLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E        +  +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   
Sbjct: 551 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 610

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 611 TSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PYMT 640

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 641 NDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGI 700

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 701 KTLYYIRLRQMA-LEGTEVEGC 721


>gi|226365903|ref|YP_002783686.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           opacus B4]
 gi|226244393|dbj|BAH54741.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           opacus B4]
          Length = 711

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 184/694 (26%), Positives = 301/694 (43%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     ++E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 57  DEKLDYLVKENYYEREVLDQYTR-NFVKSLIDHAYSKKFRFPTFLGAFKYYTSYTLKTFD 115

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E+ A +  + + +  F  +TPT  NSG  +  + 
Sbjct: 116 GKRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGEP 172

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + VR  GA I     +S GVIP +
Sbjct: 173 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPIM 232

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 233 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 292

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D+       KI A   ++ 
Sbjct: 293 TFELAKKNEDMYLFSPYDVERIYGVPFADINVTEKYYEMVDDKRIR--KSKIKAREFFQT 350

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G V  SNLC+EI   S+  E            
Sbjct: 351 VAELQFESGYPYIMYEDTVNRAN--PIAGKVTHSNLCSEILQVSTPSEFNDDLSYSHIGK 408

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI T++R L  V D     ++   KK+N    A
Sbjct: 409 DISCNLGSLNIA-----KTMDSPDFAQTIETSIRALTAVADQTSIDSVPSIKKANDEGHA 463

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHAI AS E+A+ERG  ++ F  S
Sbjct: 464 IGLGQMNLHGYLARERIHYGSDEGIDFTNIYFYTVVFHAIRASNEIAKERGTYFAGFPES 523

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       + E + E          ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 524 KYASGEYFDKYTDQVWEPKTERVRQLFADAGLHIPTQDDWRELKASVQQHGIYNQNLQAV 583

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 584 PPTGSISYINNSTSSIHPVASKIEIRK------------------------EGKIGRVYY 619

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 620 PA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDI 673

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 674 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 706


>gi|306845615|ref|ZP_07478184.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
 gi|306273936|gb|EFM55763.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
          Length = 738

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 298/693 (43%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +  + + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVDEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRTN--PIEGRITMSNLCSEILQVSEASLFHEDLSYDYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMESGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|118580911|ref|YP_902161.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           propionicus DSM 2379]
 gi|118503621|gb|ABL00104.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelobacter propionicus DSM 2379]
          Length = 744

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 296/632 (46%), Gaps = 79/632 (12%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------FYNLLSS 348
             L +L  RY     NG+ +E     F RVA  +A  +   ++ A        FY +++S
Sbjct: 16  NALTVLEKRYLRRGPNGTTLETAADMFRRVADTIAAADRSFDETADTAGLGDTFYRMMTS 75

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           F F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ +R
Sbjct: 76  FEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFSRLR 135

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  +  
Sbjct: 136 PANDMVSSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIVDFIMCKA- 194

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+++ ++ N +  + + FM+ V ++  +TL +P                        
Sbjct: 195 ---DQKQLNNFNISVGLTEKFMQAVERDEEYTLVNPRNGKQ------------------- 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ++A  ++++++   +E G P I F D  N  +P   VG + S+N C E 
Sbjct: 233 --------HGTLNARKVFQRIVKQAWENGEPGIVFLDRLNRDNPTPQVGEIESTNPCGEQ 284

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         CNLGSINL    A    D+++L  T+R AV  LDNVI+ N + +++   
Sbjct: 285 PLLPYES----CNLGSINLGKFVAEGAIDWNRLKETVRNAVHFLDNVIEANSYPLQQIHD 340

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
             H +R IGLG+MG+   L LL IPY+SPEAV++  + M+FI+     AS EL + RG++
Sbjct: 341 MTHGNRKIGLGVMGWADMLILLGIPYSSPEAVKLGTKVMKFINDEGRLASRELGKVRGSF 400

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS +D              ++D   M                    RN+    IAP
Sbjct: 401 PNFTGSTFD--------------IKDAEPM--------------------RNATVTTIAP 426

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ I   S  ++P +   Y+++ M  +    VN       K+R  + E+++  +  H
Sbjct: 427 TGTISIIANASSGVEPLFAVSYLRTVMDKNVLVEVNPHFERIAKERGFYSESLMKRIAEH 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            G++  I  +P D++++  TA +I P   I+  +  Q   D A S  + + +  + + ++
Sbjct: 487 -GTVQGIPEVPQDVQEMFVTAHDISPNDHIQMQAAFQLHTDNAVSKTVNFPNSATIEDVE 545

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +YR A+  G K     R  S      ST K 
Sbjct: 546 NVYRLAYQTGCKGVTIYRDGSRDEQVLSTAKK 577


>gi|300741627|ref|ZP_07071648.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
 gi|300380812|gb|EFJ77374.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
          Length = 722

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/763 (25%), Positives = 321/763 (42%), Gaps = 85/763 (11%)

Query: 183 SETYKNMYDGLSESDLETAL-IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           S+   + + G+S  +L   L ++    +I+ + +  +  AR              +    
Sbjct: 14  SKAVPDKFKGMSYHELNALLNLYDENGMIQFDAD--RQAARQ---------YFLQHVNNN 62

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQI 300
               H+++    E     IE       L      FD V       Y   F F  +LG   
Sbjct: 63  TVFFHDLE----EKIEYLIENQYYEPEL-FDRYSFDFVKSLFKRAYAAKFRFPTFLGAFK 117

Query: 301 LYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Y  Y L   +G R  E  +     VA+ LA       K A E  + + S  F  +TPT 
Sbjct: 118 FYTSYALKTFDGQRYLERFEDRVCMVALLLAEGNG---KLAEEIVDEIISGRFQPATPTF 174

Query: 359 FNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I   
Sbjct: 175 LNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKI 234

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R  
Sbjct: 235 ENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIK 294

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IPD+  +   +N    LFSP +V  ++ +   +  ++ + YE   D       
Sbjct: 295 TLSLGVVIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVSEKYYEMVDDSRIR--K 352

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
            KI+A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S     
Sbjct: 353 TKINAREFFQTIAEVQFESGYPYVMFEDTVNRSN--PIEGKIIMSNLCSEILQVSKPSIY 410

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIE 644
                     +   CNLGS+N+         D D L  T+ TA+R L  V D +   ++ 
Sbjct: 411 HDDLSYAEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVP 465

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             ++ N    A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+E
Sbjct: 466 SIERGNDMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKE 525

Query: 705 RG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIG 757
           RG  +  F+ S +  G F    I    E + E         +  +R  W +L   V   G
Sbjct: 526 RGVTFEGFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYG 585

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           M N N  A+ PT +I+ I G + SI P    + ++                         
Sbjct: 586 MYNQNLQAVPPTGSISYINGSTSSIHPIASKIEIRK------------------------ 621

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E  +  + Y          + +D  +    ++EI    +I++ +   + +DQ  SL L+ 
Sbjct: 622 EGKLGRVYYPA------PFMTNDNLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFF 675

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 RDTATTRDINRAQIYAWRKGIKTIYYIRLRQMA-LEGTEVEGC 717


>gi|118468034|ref|YP_886648.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469666|ref|YP_885419.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118169321|gb|ABK70217.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170953|gb|ABK71849.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 706

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/745 (24%), Positives = 314/745 (42%), Gaps = 78/745 (10%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT---HHEMQCLY----PEYFCRYIE 261
           ++  E +Y  + A   L     ++     ++  K     H     ++     E     IE
Sbjct: 1   MLPGEADYHALNAMLNLYDADGKIQFEKDREAAKQYFLQHVNQNTVFFHSQDEKLDYLIE 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQ 318
                R + +     D +    D  Y + F F  +LG    Y  Y L   +G R  E  +
Sbjct: 61  NEYYEREVLDQYSR-DFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFE 119

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP 377
              + VA+ LA  +TE    A +  + +    F  +TPT  NSG  +  +  SCFL  + 
Sbjct: 120 DRVVMVALTLAAGDTE---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIE 176

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+   
Sbjct: 177 DNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSY 236

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N 
Sbjct: 237 ANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNE 296

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              LFSP +V  ++ +   +  +  + YE   D        KI+A   ++ +  + FE+G
Sbjct: 297 DMYLFSPYDVERVYGVPFADVSVTEKYYEMVDDARIR--KTKINAREFFQTLAELQFESG 354

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSI 605
           +P+I F+D  N  +     G +  SNLC+EI   S+  E               CNLGS+
Sbjct: 355 YPYIMFEDTVNRSN--PIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSL 412

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQ 664
           N+         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M   
Sbjct: 413 NIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLH 467

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPI 723
             L    I Y S E ++  +     + FHA+ AS ++A ERG  +  F+ S +  G F  
Sbjct: 468 GYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKSKYASGEFFD 527

Query: 724 DSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                + E + +          ++  ++  W +LK+ V+  G+ N N  A+ PT +I+ I
Sbjct: 528 KYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAVPPTGSISYI 587

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + SI P    + ++                         E  I  + Y         
Sbjct: 588 NHSTSSIHPVASKIEIRK------------------------EGKIGRVYYPA------P 617

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW 
Sbjct: 618 YMTNDNLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWR 677

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919
            G+KT YY+R R    +E + ++G 
Sbjct: 678 KGIKTLYYIRLRQMA-LEGTEVEGC 701


>gi|311113721|ref|YP_003984943.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
 gi|310945215|gb|ADP41509.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
          Length = 726

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/763 (25%), Positives = 321/763 (42%), Gaps = 85/763 (11%)

Query: 183 SETYKNMYDGLSESDLETAL-IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           S+   + + G+S  +L   L ++    +I+ + +  +  AR              +    
Sbjct: 18  SKAVPDKFKGMSYHELNALLNLYDENGMIQFDAD--RQAARQ---------YFLQHVNNN 66

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQI 300
               H+++    E     IE       L      FD V       Y   F F  +LG   
Sbjct: 67  TVFFHDLE----EKIEYLIENQYYEPEL-FDRYSFDFVKSLFKRAYAAKFRFPTFLGAFK 121

Query: 301 LYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Y  Y L   +G R  E  +     VA+ LA       K A E  + + S  F  +TPT 
Sbjct: 122 FYTSYALKTFDGQRYLERFEDRVCMVALLLAEGNG---KLAEEIVDEIISGRFQPATPTF 178

Query: 359 FNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I   
Sbjct: 179 LNAGKRQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKI 238

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R  
Sbjct: 239 ENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIK 298

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IPD+  +   +N    LFSP +V  ++ +   +  ++ + YE   D       
Sbjct: 299 TLSLGVVIPDITFELAKRNEDMYLFSPYDVERIYGVAFSDINVSEKYYEMVDDSRIR--K 356

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
            KI+A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S     
Sbjct: 357 TKINAREFFQTIAEVQFESGYPYVMFEDTVNRSN--PIEGKIIMSNLCSEILQVSKPSIY 414

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIE 644
                     +   CNLGS+N+         D D L  T+ TA+R L  V D +   ++ 
Sbjct: 415 HDDLSYAEIGKDISCNLGSLNIAM-----TMDGDDLGKTVETAIRSLTAVSDQSDIRSVP 469

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             ++ N    A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+E
Sbjct: 470 SIERGNDMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKE 529

Query: 705 RG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIG 757
           RG  +  F+ S +  G F    I    E + E         +  +R  W +L   V   G
Sbjct: 530 RGVTFEGFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYG 589

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           M N N  A+ PT +I+ I G + SI P    + ++                         
Sbjct: 590 MYNQNLQAVPPTGSISYINGSTSSIHPIASKIEIRK------------------------ 625

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E  +  + Y          + +D  +    ++EI    +I++ +   + +DQ  SL L+ 
Sbjct: 626 EGKLGRVYYPA------PFMTNDNLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFF 679

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 680 RDTATTRDINRAQIYAWRKGIKTIYYIRLRQMA-LEGTEVEGC 721


>gi|328954504|ref|YP_004371838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454828|gb|AEB10657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
          Length = 738

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 183/661 (27%), Positives = 295/661 (44%), Gaps = 79/661 (11%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALK------ETEKEKRAVEF 342
           D       + +L  RY    + G   E P   F+RVA  +A        E + E+    F
Sbjct: 13  DIFLTPNAVTVLKKRYLKKDDHGDVCEQPVDMFLRVAKTIAEVDRCYDPEADIEETTRCF 72

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y+L++S  FM ++PTL N+G    QLS+CF+  V DD+  IF A++  A++ K  GG G 
Sbjct: 73  YHLMASRSFMPNSPTLMNAGRELGQLSACFVLPVDDDISSIFDAIKNTALIHKSGGGTGF 132

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R     +  T G + G I F+ + +     + QGG R+GA  A L   H D+E+F
Sbjct: 133 SFSRIRPENDRVLSTKGVASGPISFMNIFDVATETIKQGGTRRGANMAILRVDHPDIEKF 192

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +  T     +  + N +  + D FM+ V     + L +P                  
Sbjct: 193 ITCKNQT----DKLTNFNISVAVTDAFMQAVINGEDFALLNPRT---------------- 232

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       +  R + A  L+  ++   + TG P + F D  N  +P  HVG++ S+
Sbjct: 233 -----------QQPVRSVKAAVLFDLIVQSAWSTGEPGLIFLDQVNRGNPIPHVGLIEST 281

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C E  L         CNLGSINL     N   ++  L   +  +V  LDNVID N   
Sbjct: 282 NPCGEQPLLPYES----CNLGSINLAQMVKNGAVNFATLKEVVWASVHFLDNVIDANRFP 337

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + +++   +R IGLG+MGF   L  L I Y S  AV++A+E M FI   + +AS ELA
Sbjct: 338 LPQIEEATMKNRKIGLGVMGFADMLLYLGISYNSEAAVKVAEEVMSFIQRESKAASAELA 397

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ++RG + +F GS++D G                                      MRN+ 
Sbjct: 398 EKRGNFPNFPGSIYDTGN---------------------------------GKGRMRNAT 424

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT TI+ I G S  I+P +   +V+  + G +   V+ +  +  ++R  ++  ++
Sbjct: 425 TTTIAPTGTISIIAGCSSGIEPLFGISFVRRVLDGAELLEVHPYFEDVARRRGFYNGELM 484

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             +    GSI +++ IP D++++  TA +I P W +   +  QK+ D A S  +      
Sbjct: 485 RQI-AQTGSIRDLKEIPKDIRRLFVTAHDITPQWHVRIQAAFQKYTDNAVSKTVNFPASA 543

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           S + +  +Y  A+ +GLK     R RS    V     +    K    P   P  +T    
Sbjct: 544 SPEDVRQVYLLAYELGLKGITIYRDRSRDQQVLSFGQEKPPEKQYIAPRPRPARTTGVTE 603

Query: 940 I 940
           +
Sbjct: 604 V 604


>gi|188025724|ref|ZP_02959589.2| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
 gi|188020254|gb|EDU58294.1| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
          Length = 723

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 184/742 (24%), Positives = 311/742 (41%), Gaps = 84/742 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEEGV 264
           +Y  + A   +  L        ++K ++A HH  +              E     + E  
Sbjct: 24  DYHALNA---MLNLYNSAGEIQFEKDKEAAHHYFRQHVNQNTVFFHDLKEKLDFLVNENY 80

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               + E   DF  +       Y   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 81  YEPQVIE-QYDFAFIKKLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRV 139

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+ LA      +  A    + + S  F  +TPT  N G  +  +L SCFL  + D++
Sbjct: 140 CMVALTLAQG---NQALASYLVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNM 196

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ
Sbjct: 197 ESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKMLEDAFSYANQ 256

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 257 LGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENKEMY 316

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   + +   E  +  E Y    +   IK ++ I+A   ++ +  + FE+G+P+
Sbjct: 317 LFSPYDIEREYGVPMSEISVT-EKYHEMVNNKAIKKYK-INAREFFQTLAEIQFESGYPY 374

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI   +               +   CNLGS+N+ 
Sbjct: 375 ILFEDTANRAN--PIAGRINMSNLCSEILQVNRPSFYEDDLSYREVGKDISCNLGSMNIA 432

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A ++  A+R L  V D++   ++   ++ NH   AIGLG M     L
Sbjct: 433 KM-----MDAPDFAQSVAIAIRALTAVSDMSHIRSVPSIEQGNHQSHAIGLGQMNLHGYL 487

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI 726
               I Y S EA++  +     I++HA+  S +LA ER   +  F+ S +  G +    I
Sbjct: 488 ARERIHYGSEEALDFTNIYFYTITYHALKTSNQLAIERKATFKGFEHSEYANGRYFDKYI 547

Query: 727 GL--------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   ++  W  LK+ V   G+ N N  AI PT +I+ I   
Sbjct: 548 NQSWLPKTQTVQELFRRSGIEIPTQADWLSLKQSVMEHGIYNQNLQAIPPTGSISYINNS 607

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 608 TSSIHPIVARIEIRK------------------------EGKIGRVYYPA------PFMN 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+
Sbjct: 638 NDNLEYYQDAYQIGPEKIIDTYAVATQHVDQGLSLTLFFKDDATTRDINRAQIYAWRKGI 697

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R  T++E + + G 
Sbjct: 698 KTLYYIRLRQ-TALEGTEIDGC 718


>gi|239833483|ref|ZP_04681811.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
 gi|239821546|gb|EEQ93115.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
          Length = 722

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/755 (25%), Positives = 314/755 (41%), Gaps = 84/755 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV--LTTVYKKPQKATHHEMQCL 251
           S   L+   + +   L + E        +  L++ R+        +        H +   
Sbjct: 18  STDGLDYHALNAMLNLYDDE-------GKIQLDRDRQAARQYFLQHVNQNTVFFHNL--- 67

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI- 309
             E     + EG   + + +    F+ V    D  Y + F F  +LG    Y  Y L   
Sbjct: 68  -REKLDYLVSEGYYEQEVLD-QYSFNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTF 125

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367
           +G R  E  +     VA+ LA      E+ A +    + S  +  +TPT  N+G  +  +
Sbjct: 126 DGKRYLERYEDRVCMVALALARG---NEQLARDLMEEIISGRYQPATPTFLNAGKKQRGE 182

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP 
Sbjct: 183 LVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPV 242

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPD 302

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +    N    LFSP +V  ++ +   E  ++ E Y    D   I   +KI+A   ++
Sbjct: 303 ITFELAKNNEDMYLFSPYDVERVYGMPLTEISVS-EKYREMVDDARIAK-KKINAREFFQ 360

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSE 595
            +  + FE+G+P+I F+D  N  +     G +  SNLC+EI                   
Sbjct: 361 VLAEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASVFREDLSYDYLG 418

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
           +   CNLGS+N+ A       D      TI T++R L  V D++   ++    + N    
Sbjct: 419 KDISCNLGSLNIAA-----AMDSSDFGKTIETSIRSLTAVSDMSHIGSVPSVARGNDESH 473

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKG 713
           AIGLG M     L    I Y S E V+  +     +++HAI AS  +A E   ++  F+ 
Sbjct: 474 AIGLGQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVEAGKSFKGFEK 533

Query: 714 SLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G +       L         E+ D+  +   ++  W +LKK V   G+ N N  A
Sbjct: 534 SKYASGEYFDKYTEQLWEPATERVREIFDKAGIAIPTQDDWRDLKKAVMEGGLYNQNLQA 593

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 594 VPPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVY 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y    + N      D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 630 YPAAFMTN------DNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRD 683

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 684 INRAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 717


>gi|297249810|ref|ZP_06933511.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|297173679|gb|EFH33043.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
          Length = 722

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 69  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 128 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 185 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 305 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 362

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 363 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 420

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 421 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 475

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 476 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 535

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 536 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 595

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 596 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 631

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 632 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 685

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 686 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 717


>gi|212712929|ref|ZP_03321057.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
 gi|212684407|gb|EEB43935.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
          Length = 710

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 184/747 (24%), Positives = 313/747 (41%), Gaps = 86/747 (11%)

Query: 211 EKEPNYAKVTARFLLEK------LRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +  +Y  + A   L        L ++     +    +        H+++    E     
Sbjct: 7   SRNADYHALNAMLNLYDNEGRLQLDKDKQAAYLYFRQHVNQNTVFFHDLK----EKLDFL 62

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EM 316
           + E      +  +  DF  +       Y   F F  +LG    Y  Y L   +G R  E 
Sbjct: 63  VNEKYYEEEVL-AQYDFPFIKQLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLER 121

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT 375
            +     VA+ LA      +  A  F + + +  F  +TPT  N G  +  +L SCFL  
Sbjct: 122 YEDRVCMVALTLAQG---SKSLASLFVDEIITGRFQPATPTFLNCGKKQRGELISCFLLR 178

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R  GA I     +S GV+P +K+  D  
Sbjct: 179 IEDNMESIGRSVNSALQLSKRGGGVAFLMSNLREQGAPIKQIKNQSSGVVPVMKMLEDAF 238

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 239 SYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKN 298

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP ++  ++ +   E  +  E Y    +   IK F+ I+A   ++ +  + FE
Sbjct: 299 NEDMYLFSPYDIQKIYGVPMSEISVT-EKYHEMVNNKAIKKFK-INAREFFQTIAEIQFE 356

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLG 603
           +G+P+I F+D  N  +     G ++ SNLC+EI   + + +               CNLG
Sbjct: 357 SGYPYILFEDTANRAN--PIAGRINMSNLCSEILQVNQASQYEDDLSYQEIGKDISCNLG 414

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+      N  D    A +I TA+R L  V D+ N  ++    K N    AIGLG M 
Sbjct: 415 SMNIA-----NTMDSPDFALSIETAIRALTAVSDMSNIGSVPSIAKGNRQSHAIGLGQMN 469

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721
               L   HI Y S E ++  +     +++HA+  S +LA E +  +  F+ S +  G +
Sbjct: 470 LHGFLAREHIHYGSEEGLDFTNIYFYTVAYHALKTSNQLAIERQQTFDGFESSSYASGEY 529

Query: 722 PIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I            E+     +   ++  W  LK+ V T GM N N  AI PT +I+
Sbjct: 530 FDKYINNTWLPKTQTVQELFRRSGIEIPTQANWQALKQSVMTNGMYNQNLQAIPPTGSIS 589

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P    + ++                         E  I  + Y       
Sbjct: 590 YINNSTSSIHPVVAPIEIRK------------------------EGKIGRVYYPA----- 620

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
              + ++  + +  A++I P  +I++ +   + +DQ  SL L+ D   + + ++     A
Sbjct: 621 -PFMTNENLQFYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGNATTRDINKAQIYA 679

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGV 919
           W  G+KT YY+R R  T++E + ++G 
Sbjct: 680 WRKGIKTLYYIRLRQ-TALEGTEVEGC 705


>gi|163844497|ref|YP_001622152.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163675220|gb|ABY39330.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           ATCC 23445]
          Length = 713

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQVGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHQDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|289579197|ref|YP_003477824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
 gi|289528910|gb|ADD03262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
          Length = 770

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/659 (28%), Positives = 293/659 (44%), Gaps = 86/659 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   +K A        FY
Sbjct: 1   MKITENAKKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDRKYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYEIDYDKLKETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEELMEFIDKTSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEKRGTFGFYDKSIYKK-----------------------------------TGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M       VN        +R  + +
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKKVAIERGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-AQKGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           +E + + +   Y  A+ +G K     R  S  S   +   G+  K      T+  +   
Sbjct: 530 NEATVEDVRRTYLLAYKLGCKGVTIYRDGSRESQVLNL--GIKEKKEEAKPTEEQTKKE 586


>gi|261750055|ref|ZP_05993764.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261739808|gb|EEY27734.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 713

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMAN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|254776338|ref|ZP_05217854.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 693

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 294/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDTG---LAEKLVDEIIEGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ L   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKKNEDMYLFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLAREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E        +  +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTEQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|118464322|ref|YP_883081.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium 104]
 gi|118165609|gb|ABK66506.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           avium 104]
          Length = 705

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/742 (25%), Positives = 307/742 (41%), Gaps = 78/742 (10%)

Query: 212 KEPNYAKVTARFLLEK------LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264
            E +Y  + A   L          ++VL       Q    + +      E     I E  
Sbjct: 3   DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
             R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YEREVLDQYSR-NFVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
           + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  +  SCFL  + D++
Sbjct: 122 VMVALTLAAGDTG---LAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 179 ESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 239 LGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMY 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ L   +  +  + YE   D        KI A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A TI  A+R L  V D     ++   ++ N+   AIGLG M     L
Sbjct: 415 -----KTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F     
Sbjct: 470 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 529

Query: 727 GLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E        +  +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   
Sbjct: 530 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 589

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 590 TSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PYMT 619

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 620 NDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGI 679

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 680 KTLYYIRLRQMA-LEGTEVEGC 700


>gi|322831490|ref|YP_004211517.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321166691|gb|ADW72390.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 720

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/763 (24%), Positives = 310/763 (40%), Gaps = 95/763 (12%)

Query: 204 FSSRTLIEKEP-----NYAKVTARFLLEK-----------LRREVLTTVYKKPQKATHHE 247
            ++  L   +P     +Y  + A   L             L        +        H 
Sbjct: 1   MAATELAITDPGTRGPDYHALNAMLNLFDANGQIQFDKDRLAARQYFLQHVNQNTVFFHN 60

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYF 306
           +     E     +EEG     + +    FD +       Y + F F  +LG    Y  Y 
Sbjct: 61  L----AEKLRYLVEEGYYEAAVLD-QYAFDDIKALFKQAYAKKFRFQTFLGAFKYYTSYT 115

Query: 307 LHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           L   +G R  E  +     VA+ LA  + +    A  F + + S  F  +TPT  N G  
Sbjct: 116 LKTFDGKRYLERYEDRVCMVALTLARGDIQ---LAGHFVDEIISGRFQPATPTFLNCGKK 172

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S G
Sbjct: 173 QRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFMLTNIREVGAPIKRIENQSSG 232

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 233 VIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGV 292

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +    N    LFSP  V  ++ +   E  I+ E Y    +   I   + I+A 
Sbjct: 293 VIPDITFELAKNNEDMYLFSPYHVEKVYGVPMSEISIS-EKYREMVNDKRIHKSK-INAR 350

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------- 594
             ++ +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +S          
Sbjct: 351 EFFQVLAEIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNSPTIYGEDLSY 408

Query: 595 ---EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
               +   CNLGS+N+ +       D     +T+  AVR L  V D++   ++    + N
Sbjct: 409 QEIGKDISCNLGSLNIAS-----AMDSPDFGNTVEMAVRALTAVSDMSHIRSVPSIDQGN 463

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYS 709
               AIGLG M     L    I Y S E ++  +     ++FHAI AS ++A E + ++ 
Sbjct: 464 QDSHAIGLGQMNLHGYLCRERIYYGSEEGLDFTNIYFCTVAFHAIRASNQIAIERQQSFK 523

Query: 710 SFKGSLWDQGVFPIDSIG------------LLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
            F  S +  G +    +              + E+  +  +   +   W  LK  V   G
Sbjct: 524 GFSDSTYASGAYFDKYVDDALAAKWQPKTERVRELFADAGIAIPTTADWAALKASVMQHG 583

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           + N N  A+ PT +I+ I   + SI P    + ++                         
Sbjct: 584 LYNQNLQAVPPTGSISYINNSTSSIHPIVSRVEIRK------------------------ 619

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E  I  + Y    + N      D    +  A+EI P  +I++ +   + +DQ  SL L+ 
Sbjct: 620 EGKIGRVYYPAAFMTN------DNLDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFF 673

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 674 RDTATTRDINKAQIYAWRKGIKTIYYIRLRQMA-LEGTEVQGC 715


>gi|23500071|ref|NP_699511.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|62317764|ref|YP_223617.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|83269750|ref|YP_419041.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|148558300|ref|YP_001257347.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|161620389|ref|YP_001594275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|225686157|ref|YP_002734129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256015099|ref|YP_003105108.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260756871|ref|ZP_05869219.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260760302|ref|ZP_05872650.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260763542|ref|ZP_05875874.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882685|ref|ZP_05894299.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|261215814|ref|ZP_05930095.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261216943|ref|ZP_05931224.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261313588|ref|ZP_05952785.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261319173|ref|ZP_05958370.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261319813|ref|ZP_05959010.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261753310|ref|ZP_05997019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|265986824|ref|ZP_06099381.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|265989660|ref|ZP_06102217.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265993238|ref|ZP_06105795.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|23463662|gb|AAN33516.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           1330]
 gi|62197957|gb|AAX76256.1| NrdE, ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940024|emb|CAJ13055.1| Ribonucleotide reductase large subunit:Prenyl group binding site
           (CAAX box) [Brucella melitensis biovar Abortus 2308]
 gi|148369585|gb|ABQ62457.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ovis
           ATCC 25840]
 gi|161337200|gb|ABX63504.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella canis
           ATCC 23365]
 gi|225642262|gb|ACO02175.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           melitensis ATCC 23457]
 gi|255997759|gb|ACU49446.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260670620|gb|EEX57560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260673963|gb|EEX60784.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676979|gb|EEX63800.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260872213|gb|EEX79282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|260917421|gb|EEX84282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260922032|gb|EEX88600.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261292503|gb|EEX95999.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261298396|gb|EEY01893.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261302614|gb|EEY06111.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261743063|gb|EEY30989.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|262764108|gb|EEZ10140.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263000329|gb|EEZ13019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|264659021|gb|EEZ29282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 713

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|254699598|ref|ZP_05161426.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 738

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMAN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|261220159|ref|ZP_05934440.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265996494|ref|ZP_06109051.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260918743|gb|EEX85396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262550791|gb|EEZ06952.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 713

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|17989275|ref|NP_541908.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|189023016|ref|YP_001932757.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237817304|ref|ZP_04596296.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|254691264|ref|ZP_05154518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254695434|ref|ZP_05157262.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|254699052|ref|ZP_05160880.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254702721|ref|ZP_05164549.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706145|ref|ZP_05167973.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|254711556|ref|ZP_05173367.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|254712153|ref|ZP_05173964.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|254715224|ref|ZP_05177035.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|254732498|ref|ZP_05191076.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|256029808|ref|ZP_05443422.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|256043235|ref|ZP_05446172.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256111773|ref|ZP_05452744.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|256256450|ref|ZP_05461986.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|256262716|ref|ZP_05465248.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260544999|ref|ZP_05820820.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260564447|ref|ZP_05834932.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568372|ref|ZP_05838841.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|17985138|gb|AAL54172.1| ribonucleoside-diphosphate reductase alpha chain [Brucella
           melitensis bv. 1 str. 16M]
 gi|189021590|gb|ACD74311.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus S19]
 gi|237788117|gb|EEP62333.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|260098270|gb|EEW82144.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260152090|gb|EEW87183.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260155037|gb|EEW90118.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|263092504|gb|EEZ16757.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410494|gb|ADZ67558.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326553786|gb|ADZ88425.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M5-90]
          Length = 738

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|261323426|ref|ZP_05962623.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261299406|gb|EEY02903.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 713

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 296/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCLEILQVSEASLFHEDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMTN------DNLEYYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|269217730|ref|ZP_06161584.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269212665|gb|EEZ79005.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 712

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 191/737 (25%), Positives = 316/737 (42%), Gaps = 76/737 (10%)

Query: 215 NYAKVTARFLLEKLR-------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +Y  + A+  L                  Y       +        E     ++EG   +
Sbjct: 15  DYHALNAKLNLYDANGLIQFDADRAAARQYFLQHVNKNTVYFHDLEEKMEYLVKEGYYEK 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRV 324
            + +    FD V       Y + F F  +LG    Y  Y L   +G+R  E  +     V
Sbjct: 75  EVLD-QYPFDFVKSLYKAAYAKKFRFPTFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMV 133

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGI 383
           A+ LA  + +    AV+    + S  F  +TPT  N+G     +L SCFL  + D++  I
Sbjct: 134 ALTLARGDQD---LAVDLMEEIISGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESI 190

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
              +     L+K  GG+  + + +R LGA I     +S GV P +K+  D+    NQ G 
Sbjct: 191 ARGINSALQLSKRGGGVALNLSNLRELGAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGA 250

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFS
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFS 310

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +V  ++ +   E  ++ E Y    D   I+  + I+A A ++ +  + FE+G+P+I F
Sbjct: 311 PYDVERVYGVPFTEISVS-EKYREMVDDKRIRKSK-INARAFFQTLSEIQFESGYPYIVF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHF 611
           +D  N  +     G V  SNLC+EI   S + E               CNLGS+N+    
Sbjct: 369 EDTVNAAN--PIKGKVTMSNLCSEILQVSEASEYNPDLSYAHVGKDISCNLGSMNIA--- 423

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   L  T+ TAVR L  V D+    ++   ++ N    +IGLG M     L   
Sbjct: 424 --KAMDSPDLGKTVETAVRALTAVSDMTDIRSVPSIERGNAMSHSIGLGQMNLHGYLGRE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--- 726
            + Y S E ++  +     + FHAI AS+E+A+ER   ++ F+ S +  G F    +   
Sbjct: 482 RVFYGSEEGLDFTNMYFYTVLFHAIRASMEIARERGERFAGFEDSTYATGEFFDKYVEGA 541

Query: 727 --GLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                 +VR+  A ++  +   W  L++ V+  GM N N  A+ PT +I+ I   + SI 
Sbjct: 542 WEPTTPKVRELFANVHIPTSEDWAALREDVRRYGMYNQNLQAVPPTGSISYINHSTSSIH 601

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + ++                         E  I  + Y          + +D  +
Sbjct: 602 PIVSKIEIRK------------------------EGKIGRVYYPA------PYMTNDNLE 631

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  Y  AW  G+KT YY
Sbjct: 632 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNRNYIYAWRKGIKTLYY 691

Query: 903 LRSRSATSVEKSTLKGV 919
           +R R   ++E + + G 
Sbjct: 692 MRIRQ-QALEGTEVAGC 707


>gi|306840846|ref|ZP_07473593.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
 gi|306289241|gb|EFM60490.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYDYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDADIAIPTQDDWCALKKAVMESGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|265985044|ref|ZP_06097779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264663636|gb|EEZ33897.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 713

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 60  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 118

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 119 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 176 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 236 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 296 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQIL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRAN--PIEGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 412 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 467 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 526

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 527 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 587 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 622

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 623 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 676

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 708


>gi|256059455|ref|ZP_05449657.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 296/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCLEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|225628772|ref|ZP_03786806.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|260167085|ref|ZP_05753896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261756479|ref|ZP_06000188.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
 gi|225616618|gb|EEH13666.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|261736463|gb|EEY24459.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|256157978|ref|ZP_05455896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|256253063|ref|ZP_05458599.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|48696770|ref|YP_024594.1| ORF51 [Ostreid herpesvirus 1]
 gi|81986457|sp|Q6R7H4|RIR1_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase large subunit
 gi|41352434|gb|AAS00941.1| ORF51 [Ostreid herpesvirus 1]
          Length = 835

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/791 (27%), Positives = 357/791 (45%), Gaps = 80/791 (10%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH--HEMQCLYPEYFC-----RYIE 261
           LI   P+YA +  R            T    P+  T   + +Q    E        + ++
Sbjct: 77  LIPSHPDYAFLAGRVS-------AYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKPVK 129

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G+   ++    ++     L   +   RD++  Y+G+  L +   + +N    E PQ  F
Sbjct: 130 GGLSDEIVD--FVNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVF 187

Query: 322 MRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           MRVAM +    +E   +   + Y L+S      ++P LFN GT     +SCFL  + D++
Sbjct: 188 MRVAMAMTDLSSETALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNM 247

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   + +   L   +GG+G +++ +R  G+ I    GKS G+   L + +  A +V+Q
Sbjct: 248 VSITKKVAQTMTLIAKNGGIGINFSKLRATGSKIGM-AGKSSGIGGKLNLFDRVAQSVDQ 306

Query: 441 -GGKRKGAVCAYLETWHIDVEEFLDL-RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
              KR GA+  YL  WH D+ ++L      +G++  + H +N    + DLFM+RV  +  
Sbjct: 307 GENKRPGAIAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKE 366

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LFSP++V  L +LYG++F  AY  +E             +SA  L+  +  M++ TG 
Sbjct: 367 WSLFSPNDVVGLEELYGEKFVRAYRAHEA----NPKIKRTTVSARKLFSDIANMMWSTGE 422

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P+I FKD  N RS  +H+G + +SNLC EI     + E AVCNL +I +         + 
Sbjct: 423 PYILFKDAVNERSNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETGEI 482

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTI----------EKAKK------------------ 648
           D++ +A     A + ++N+ID   + +          E+ ++                  
Sbjct: 483 DFEGIADAAGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSY 542

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR  G+G+ G       L IPY S  A  +A    E I + A+  SV++A+E+G Y
Sbjct: 543 SNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPY 602

Query: 709 SSF--KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            S+    +   +G    D +      RD           W E+ K+ +  G+ NS   A 
Sbjct: 603 PSYYWDNNTHREGKLQFDFLEGFDRDRDL----THELFNWREVLKKFEKFGINNSVVTAQ 658

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            P+A+ + +    +SI+    N + K    G F ++N  L  +L+   +WD  M+ D++ 
Sbjct: 659 PPSASSSQLNDNVESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEA 718

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           +DGSI NIERIP ++++I+ TA EID   +++  +  Q +IDQ  S N+++ +     + 
Sbjct: 719 NDGSIQNIERIPKNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQ 778

Query: 887 FIY---RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            I         M LKT  YY R   A   +         K    PV +            
Sbjct: 779 LIMENVILGHKMKLKTGMYYTRGIPAMKQQNFGKMNFQDKDIGKPVPEL----------- 827

Query: 943 SCTSDTECEVC 953
                 +CE C
Sbjct: 828 -----VDCEAC 833


>gi|254720035|ref|ZP_05181846.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306839413|ref|ZP_07472227.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
 gi|306405536|gb|EFM61801.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
          Length = 738

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/693 (25%), Positives = 297/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQIL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIEGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 702 RAQIYAWKKGIKTIYYIRLRQMA-LEGTQVQGC 733


>gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99036640|gb|ABF63252.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Ruegeria sp. TM1040]
          Length = 710

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 188/752 (25%), Positives = 319/752 (42%), Gaps = 80/752 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +DL+   + +   L + E N      R    +         +        H +     E
Sbjct: 7   TADLDYHALNAMLNLYDDEGNIQFDADRMAARQ-----YFLQHVNQNTVFFHSL----DE 57

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS- 312
                +E+G     + +     +      D  Y + F F  +LG    Y  Y L      
Sbjct: 58  KLGYLVEKGYYEPEVLDQYSR-NFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQ 116

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
             +E  +   +  A+ LA  +   EK A++  + +    F  +TPT  N+G +   +  S
Sbjct: 117 RYLERYEDRVVMNALTLARGD---EKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVS 173

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+
Sbjct: 174 CFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKL 233

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 234 LEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 293

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   +N    LFSP +V  ++     E  +  E Y    D  +I+  +KI+A A ++ + 
Sbjct: 294 QLAKKNEDMYLFSPHDVEKVYGQAFSEISVT-EKYHEMVDNPQIRK-KKINARAFFQTIA 351

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TA 598
            + FE+G+P+I F+D  N  +     G +  SNLC+EI   +   +              
Sbjct: 352 EIQFESGYPYIMFEDTVNAAN--PIAGRIAMSNLCSEILQVNEPSKFNDDLSYEQMGTDI 409

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D   LA T+ TA+R L+ V +++   ++   +K N    AIG
Sbjct: 410 SCNLGSMNIAR-----AMDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAIG 464

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716
           LG M     L    I Y S E V+  +     + +HAISAS  LA+E+ + +  F+ S +
Sbjct: 465 LGQMNLHGYLARERIHYGSAEGVDFTNIYFCTVLYHAISASNALAKEKKSKFKGFEDSAY 524

Query: 717 DQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    +            E+ +   +   +R  W+ L+ +V   G+ N N  A+ P
Sbjct: 525 ADGSFFEKYVEKDWLPETDRVKELFETAGVEIPTRKDWEALRDKVMKHGLYNRNLQAVPP 584

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++                         E  I  + Y  
Sbjct: 585 TGSISYINYATSSIHPITAKIEIRK------------------------EGKIGRVYYPA 620

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                   + +D  + +  A+EI P  +I++ +   + +DQ  SL L+   E S + ++ 
Sbjct: 621 ------PYMTNDNLEYYRDAYEIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINR 674

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R   ++E + ++G 
Sbjct: 675 AQIYAWKKGIKTIYYIRLRQ-QALEGTEVEGC 705


>gi|270307717|ref|YP_003329775.1| ribonucleotide reductase [Dehalococcoides sp. VS]
 gi|270153609|gb|ACZ61447.1| ribonucleotide reductase [Dehalococcoides sp. VS]
          Length = 761

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/655 (27%), Positives = 290/655 (44%), Gaps = 85/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E       +   R  EFY
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKPTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +   G       + N +  I D FM+ V   A + L +P                   
Sbjct: 200 HAKDKAGV----LTNFNLSVAITDKFMQAVKDGADYDLLNPHNGE--------------- 240

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 241 ------------VVSCLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          +  DY KL+  I++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPYES----CNLGSINLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG+MGF   L  L IPY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L   +G+  +   +PD+ K++  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLA--EGAHLDEADVPDEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             +G+  +  +Y+ A    LK     R  S      ST K  +       V +PN
Sbjct: 548 RDAGECDVADVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPN 602


>gi|281413956|ref|ZP_06245698.1| ribonucleotide-diphosphate reductase subunit alpha [Micrococcus
           luteus NCTC 2665]
          Length = 693

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 178/710 (25%), Positives = 296/710 (41%), Gaps = 75/710 (10%)

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EY 295
           +        H+++         Y+++             F+ V    D  Y+  F F  +
Sbjct: 27  HVNTNTVFFHDLEEK-----LDYLQKNDYYETETFEQYPFEFVRGLFDRAYKAKFRFPTF 81

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    Y  Y L   +G R  E  +     VA+ LA  + E    A    + + +  F  
Sbjct: 82  LGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGDQE---LATHLVDEMIAGRFQP 138

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG  +  +L SCFL  + D++  I   +     L+K  GG+    T +R  GA
Sbjct: 139 ATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGA 198

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 199 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADE 258

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +V  ++ +   E  +  + YE   D  
Sbjct: 259 KIRIKTLSLGVVIPDITFQLAKKNEDMYLFSPYDVERVYGVPFSEISVTEKYYEMVDDAR 318

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                 KISA   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S
Sbjct: 319 I--KKTKISAREFFQTIAEIQFESGYPYVVFEDTVNAAN--PIKGRITMSNLCSEILQVS 374

Query: 593 SSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDIN 639
            + E               CNLGS+N+         D      ++ TA+R L  V +  +
Sbjct: 375 EASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMDSPDFGRSVETAIRALTAVSVMSD 429

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
             ++    K N    AIGLG M     L   H+ Y S E ++  +     + FHA+ AS 
Sbjct: 430 IQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASN 489

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
            +A E    +  F+ S +  G F               +AE+  +  +   ++  W ELK
Sbjct: 490 RIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELK 549

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   G+ N N  A+ PT +I+ I   + SI P    + ++                  
Sbjct: 550 ASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVASKIEIRK----------------- 592

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + ++  + +  A+EI    +I++ +   + +DQ 
Sbjct: 593 -------EGKLGRVYYPA------PYLTNENLEYYEDAYEIGYEKIIDTYAAATQHVDQG 639

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+  D  + + L+     AW  G+KT YY+R R    +E + ++G 
Sbjct: 640 LSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRLRQLA-LEGTEVEGC 688


>gi|238755710|ref|ZP_04617044.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238706077|gb|EEP98460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 705

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/756 (24%), Positives = 310/756 (41%), Gaps = 88/756 (11%)

Query: 195 ESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            S+L+   + +   L + +     +  ++ AR              +        H +Q 
Sbjct: 2   TSELDYHSLNAMLNLYDADGQIQFDKDRLAARQ---------YFLQHVNQNTVFFHSLQ- 51

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI 309
              E      EEG     +     DF  +       Y + F F  +LG    Y  Y L  
Sbjct: 52  ---EKIDYLTEEGYYETEVLA-QYDFSFIKSLFQQAYAKKFRFPTFLGAFKYYTSYTLKT 107

Query: 310 -NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHP 366
            +G R  E  +     VA+ LA  +   +  A      + S  F  +TPT  N G  +  
Sbjct: 108 FDGQRYLERYEDRICMVALTLAAGD---QTLAHHLVEEMISGRFQPATPTFLNCGKKQRG 164

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  A+     L+K  GG+    + +R +GA I     +S GVIP
Sbjct: 165 ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 224

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 225 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 284

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D+  +    N    LFSP ++  ++ +   E  ++ E Y        I+  + I A   +
Sbjct: 285 DITFELAKNNEEMYLFSPYDIELVYGVPMSEISVS-EKYREMVGNKRIRKSK-IRAREFF 342

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--------- 597
           + +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   +   E          
Sbjct: 343 QLLAEIQFESGYPYLMFEDTVNKAN--PIKGRINMSNLCSEILQVNQPTEYHEDLSYKHI 400

Query: 598 ---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTH 653
                CNLGS+N+         D    A TI TA+R L  V D++   ++    K N   
Sbjct: 401 GKDISCNLGSLNIAR-----TMDSPNFAQTIETAIRGLTAVSDMSHIRSVPSIDKGNQES 455

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFK 712
            AIGLG M     L    I Y S EA++  +     +++HA+ AS +LA ER + +  F 
Sbjct: 456 HAIGLGQMNLHGYLARERIYYGSEEALDFTNIYFYTVAYHAMRASNQLAIERASRFKGFD 515

Query: 713 GSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G +    I          +  +  +  +   ++  W  L+  V   G+ N N  
Sbjct: 516 ESHYASGSYFSKYIEQVWLPKTPRVQTLFTDACIPIPTQQDWAALRHSVMEHGLYNQNLQ 575

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PT +I+ I   + SI P    + ++                         E  I  +
Sbjct: 576 AVPPTGSISYINHATSSIHPIVSQIEIRK------------------------EGKIGRV 611

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
            Y          + ++    +  A++I P  +I++ +   + +DQ  SL L+  D  + +
Sbjct: 612 YYPA------PYMTNENLDYYQDAYQIGPEKMIDTYAAATQHVDQGLSLTLFFRDTATTR 665

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++     AW  G+KT YY+R R    ++ + ++G 
Sbjct: 666 DINKAQIYAWKKGIKTLYYIRLRQMA-LQGTEIEGC 700


>gi|297545362|ref|YP_003677664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843137|gb|ADH61653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 770

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/656 (28%), Positives = 293/656 (44%), Gaps = 85/656 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   +K A        FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDKKYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYEIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ ++ MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEKLMEFIDKTSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGINIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M       VN        +R  + +
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKEVAIERGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W I+  +  QK +D A S  + + 
Sbjct: 471 ELMREI-AQKGSLKDIKGIPEDVKRVFVIAHDIDPEWHIKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +E + + +   Y  A+ +G K     R  S  S   + L   + K  A P  +   
Sbjct: 530 NEATVEDVRKTYLLAYKLGCKGVTIYRDGSRESQVLN-LGIKEKKEEAKPREEQTK 584


>gi|307944766|ref|ZP_07660104.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
 gi|307771980|gb|EFO31203.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
          Length = 715

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 188/751 (25%), Positives = 316/751 (42%), Gaps = 80/751 (10%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           ++L+   + +   L +++ +      R    +         +        H +Q    E 
Sbjct: 13  AELDYHALNAMLNLYDEKGHIQFEADRQAARQ-----YFLQHVNQNTVFFHSLQ----EK 63

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313
               + EG     + E   D   V    D  Y R F F  +LG    Y  Y L   +G R
Sbjct: 64  LGYLVREGYYEAEVLE-QYDPAFVQSVFDAAYARKFRFPTFLGAFKYYTSYTLKTFDGKR 122

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
             E  +   + VA+ LA  +   E  A+   + + S  F  +TPT  N+G  +  +L SC
Sbjct: 123 YLERFEDRVVMVALTLAQGD---EDLAMRMMDEIISGRFQPATPTFLNAGKKQRGELISC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+ 
Sbjct: 180 FLLRLEDNMESIGRGINSALQLSKRGGGVALLLTNIREAGAPIKGIENQSSGVIPVMKLL 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+  +
Sbjct: 240 EDSFSYANQLGARQGAGAVYLNAHHPDILQFLDTKRENADEKIRIKTLSLGVVIPDITFE 299

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +N    LFSP +V  ++     +  I  + Y    D   I+  +KISA   ++ +  
Sbjct: 300 LAKRNEDMYLFSPHDVEKVYGTSLSQISIT-DKYREMVDDPRIRK-KKISARGFFQTIAE 357

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599
           + FE+G+P++ F+   N  S     G ++ SNLC+EI                       
Sbjct: 358 IQFESGYPYVLFEGTANRAS--PVDGHINMSNLCSEILQVNEASVFNDDLSYEHLGTDIS 415

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D   L +T+ TAVR L  V       ++   ++ N    AIGL
Sbjct: 416 CNLGSLNIA-----KAMDGGDLGATVETAVRALTAVSNMSAIDSVPSVRRGNDESHAIGL 470

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L    I Y S E ++  +     +++H + AS +LA+E+  ++  F+ S + 
Sbjct: 471 GQMNLHGYLARERIHYGSEEGIDFTNIYFYAVAYHCLRASNKLAREQGSSFKGFEKSRYA 530

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F    I          +A + +   ++  +   W  LK+ V+  G+ N N  A+ PT
Sbjct: 531 DGSFFDKYIENDWMPATERIANLFETAGISLPTCDDWQALKEAVQRDGLYNRNLQAVPPT 590

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         E  I  + Y   
Sbjct: 591 GSISYINNSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPAA 626

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            + N      D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 627 YMDN------DNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRA 680

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              AW  G+KT YY+R R    +E + ++G 
Sbjct: 681 QIYAWKKGIKTIYYIRLRQMA-LEGTEVQGC 710


>gi|229818598|ref|YP_002880124.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564511|gb|ACQ78362.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 701

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/728 (25%), Positives = 309/728 (42%), Gaps = 77/728 (10%)

Query: 221 ARFLLEKLRREVLTTV--YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
            R  L+K R         +        H ++    E     +E G     +       + 
Sbjct: 17  GRLQLDKDRSAAREYFLQHVNQNTVFFHNLK----EKLDYLVEHGYYESEVLGKYSR-EF 71

Query: 279 VYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEK 335
           V    D+ Y + F F  +LG    Y  Y L   +G R  E  +   + VA+ LA  +   
Sbjct: 72  VEHIFDVAYAKKFRFTTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLADGD--- 128

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E+ A+E  + + S  F  +TPT  N+G  +  +L SCFL  + D++  I   +     L+
Sbjct: 129 EQLALELVDEVISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLS 188

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL  
Sbjct: 189 KRGGGVALLLSNIREYGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHA 248

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ + 
Sbjct: 249 HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGVP 308

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             E  +  + YE   D        KI A   ++ +  + FE+G+P+I F+D  N  +   
Sbjct: 309 FSEISVTEKYYEMLDDARIR--KTKIKAREFFQLLAEIQFESGYPYIVFEDTVNRAN--P 364

Query: 575 HVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI               + + +   CNLGS+N+      +  D   L 
Sbjct: 365 IKGRITMSNLCSEILQVSTASSFNDDLSYADTGKDISCNLGSLNIA-----HAMDSPDLG 419

Query: 623 STIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            T+  A+R L  V D     ++   +K N+   AIGLG M     L    I Y S E V+
Sbjct: 420 KTVGVAIRSLTAVSDQTHIWSVPSVEKGNNDSHAIGLGQMNLHGYLARERIHYGSAEGVD 479

Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEV 732
             +     + +HAI+AS ++A ER  A++ F  S +  G F               +A++
Sbjct: 480 FTNIYFYTVLYHAIAASNQIAIERGSAFAGFSESQYASGEFFDKYTDGVWEPATDRVAQL 539

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +  ++  ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++
Sbjct: 540 FADAEVHIPTQSDWQALKASVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVAPIEIR 599

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                                    E  I  + Y          + DD  + +A A+EI 
Sbjct: 600 K------------------------EGKIGRVYYPA------PYLSDDNLEYYADAYEIG 629

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
              +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +
Sbjct: 630 YEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQIA-L 688

Query: 912 EKSTLKGV 919
           E + ++  
Sbjct: 689 EGTEVENC 696


>gi|260904341|ref|ZP_05912663.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           linens BL2]
          Length = 693

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 182/717 (25%), Positives = 306/717 (42%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++     + +           L  E     +E+      + +    FD +   +   Y  
Sbjct: 17  KQAARQYFLQHVNNNTVFFHDL-KEKLDYLVEKEYYEPEVLD-QYSFDFIEELSKHAYSA 74

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R  E  +   + VA+ LA  +   E  A +  + +
Sbjct: 75  KFRFQTFLGAFKFYTSYTLKTFDGKRYLERFEDRVVMVALFLARGD---ETLAKQLVDEI 131

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T
Sbjct: 132 IHGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALT 191

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+ +FLD 
Sbjct: 192 NIRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDT 251

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +  E Y
Sbjct: 252 KRENADEKIRIKTLSLGVVIPDITFELAKRNEDMYLFSPYDVERVYGMPFSDVNVT-EKY 310

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D   IK  + I+A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC
Sbjct: 311 EEMVDNAAIKKNK-INAREFFQTLAEIQFESGYPYVMFEDTVNKAN--PIDGKIIMSNLC 367

Query: 586 TEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S   +               CNLGS+N+         D      TI TA+R L 
Sbjct: 368 SEILQVSEPSKYDSDLGYDVVGKDISCNLGSLNIAL-----TMDSTDFGQTIETAIRGLT 422

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V + +   ++    + N    AIGLG M     L   HI Y S E ++  +     +++
Sbjct: 423 AVAETSDIQSVPSIARGNDMSHAIGLGQMNLHGYLAREHIYYGSDEGLDFTNMYFYTVAY 482

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSR 743
           H + AS+E+A+ER   ++ F+ S +  G +       + E R         E  ++  ++
Sbjct: 483 HCVRASMEIAKERKTAFAGFERSKYASGEYFDKYTDEVWEPRTRRVAEMFTEAGVHIPTQ 542

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 543 DDWRELKAAVAEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKVEIRK---------- 592

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + N      D  K +  A+EI    +I++ +  
Sbjct: 593 --------------EGKIGRVYYPAPFMDN------DNLKYYQDAYEIGYEKIIDTYAEA 632

Query: 864 QKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K +DQ  SL L ++D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 633 TKHVDQGLSLTLFFMDTATTRDINKAQIYAWRKGIKTIYYIRLRQLA-LEGTEVDGC 688


>gi|311992968|ref|YP_004009835.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
 gi|295815257|gb|ADG36183.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
          Length = 750

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/804 (24%), Positives = 331/804 (41%), Gaps = 84/804 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETA 201
           +K++   G    F+  ++  ++  A  G++   D+    +      ++ D ++ S+++ A
Sbjct: 1   MKVIKSSGIAQEFDQNKIMQVLNWALEGIEFTSDIDVYDLFDRIIPHLKDEMTTSEIQDA 60

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           ++  +   I  +E +Y  V +      LR+ V    +  P+          + ++     
Sbjct: 61  IVKVAADSITLEEQDYQYVASNLAQFGLRKAVFGQ-FDPPK----------FIDHVTSVT 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQ 318
             G+    +       +   L   + + RDF F Y G   L D+Y +     G   E PQ
Sbjct: 110 AHGLYDSEILLKYSPAEFEELEEAIDHSRDFTFTYAGTCQLMDKYLVKDRSTGKIYETPQ 169

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             FM + M L   E +  +     EFY  +S+      TP +    T   Q SSC +   
Sbjct: 170 FAFMLIGMCLHQDEDKSTRLQAVKEFYEAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  A            G+G +   +R  G+ I     K  GV+PF K  N    
Sbjct: 230 GDSLDSINDANSAIVKYVSKRAGIGINAGMIRAEGSKIGPGEVKHTGVVPFWKHFNSAVH 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG RKG+   +   WH++VE  + L+ N G +  R   M+    I +L ++R   N
Sbjct: 290 CCSQGGIRKGSATMFFPMWHLEVENLIVLKNNKGVEENRIRHMDYGLQINELLIERYINN 349

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM-LTMLFE 555
              TLFSPD   +L+D Y    E   E YE    +  ++  +++ A  LW +M  T    
Sbjct: 350 DYITLFSPDAHPELYDSYFSNPERFREIYEDLEKQPLVRK-KRMKARTLWEEMFATERAN 408

Query: 556 TGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLA 609
           T   + +F D  N      + +  V  SNLC EI L++        E A+C L +  L +
Sbjct: 409 TARIYPSFVDNINEYGPWIREIAPVRQSNLCMEIALHTKDIGREDGEIALCTLSAFVLDS 468

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
               NQ + +++A  +   VR LDN++D   +  EKA  S   +R++G+G+  + + L  
Sbjct: 469 FDWKNQDEINRIAMVM---VRSLDNLLDYQDYPHEKA-LSAKEYRSLGVGVTNYAAWLAS 524

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-GL 728
               Y    A EI  E  E + +  I AS++LA+E+G       + + QG  PID     
Sbjct: 525 NSASYND--ANEITHELFERLQYALIKASIQLAKEKGPSPRLYMTKYGQGKLPIDWYRPS 582

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + E+ + + +     L W+ L++ +   GMRN+   A+ P  + + +   +  ++P    
Sbjct: 583 VDELVEPVYV-----LDWEALREDLILYGMRNTTLSAMMPCESSSQVSNSTNGLEPPRGP 637

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VKS+  G F  V                                     + +  +  A
Sbjct: 638 VSVKSSKGGAFNQVVPNY--------------------------------AENQLFYDFA 665

Query: 849 FEI---DPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGL 897
           +E+        +   S  QKW DQA SLN Y           P  + +D I   A   G 
Sbjct: 666 WELAKTGNKGYLTQCSIIQKWNDQAISLNTYYLPSRYENGKVPMSEIIDDILF-ANFYGN 724

Query: 898 KTTYYLRSRSATSVEKSTLKGVDG 921
           K  YY  +   + ++ S+ +G +G
Sbjct: 725 KNMYYHNTDDGSGLD-SSDEGCEG 747


>gi|283835590|ref|ZP_06355331.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068802|gb|EFE06911.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 705

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/729 (25%), Positives = 314/729 (43%), Gaps = 77/729 (10%)

Query: 220 TARFLLEKLRREVLTTV--YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K  + V      + +P   T    Q    E     + EG     +  S  D  
Sbjct: 20  AGRIQFDKDHQAVDAFFAAHVRPNSVTFASQQ----ERLEVLVSEGYYDESVL-SRYDRT 74

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +  
Sbjct: 75  FVITLFARAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD-- 132

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L
Sbjct: 133 -ETLAMQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQL 191

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 192 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 251

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP +V  L+  
Sbjct: 252 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVAFRLAKENAQMALFSPYDVERLYGK 311

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  ++    E  A   E    + I+A   ++++  + FE+G+P+I F+D  N  +  
Sbjct: 312 PFGDIAVSERYDELLA--DERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRAN-- 367

Query: 574 QHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+                 CNLGS+N+      +  D    
Sbjct: 368 PIAGRINMSNLCSEILQVNSASTYDDALGYTQIGHDISCNLGSLNIA-----HTMDSPDF 422

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             T+ TAVR L  V D++  H++   +  N    AIGLG M     L    I Y SPE +
Sbjct: 423 GRTVETAVRGLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGL 482

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRD 734
           +  +     I++HA++ S++LA+ER   ++ F  S +  G +       D     A+VR 
Sbjct: 483 DFTNLYFYTITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQGDWQPKTAKVRA 542

Query: 735 ELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             A   +   +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 543 LFAASGITLPTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEI 602

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +                         E  I  + Y          + ++   ++  A+EI
Sbjct: 603 RK------------------------EGKIGRVYYPA------PFMTNENLALYQDAYEI 632

Query: 852 DPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P  +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    
Sbjct: 633 GPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQLA- 691

Query: 911 VEKSTLKGV 919
           +E + ++G 
Sbjct: 692 LEGTEIEGC 700


>gi|145633335|ref|ZP_01789066.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986181|gb|EDJ92771.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 645

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 165/678 (24%), Positives = 277/678 (40%), Gaps = 67/678 (9%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
              + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 3   KYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 62

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 63  LLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 122

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 123 LDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCS 182

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +    
Sbjct: 183 QGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGEI 242

Query: 500 TLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++     T
Sbjct: 243 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAST 298

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINL 607
           G  +I   D CN  SP    V  V  SNLC EI         +N  + E A+C L + NL
Sbjct: 299 GRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL 358

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L
Sbjct: 359 GKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYL 413

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+  
Sbjct: 414 AKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYK 473

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +   +          W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 474 KDLDSLTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRG 529

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++ +K++  G    V     N +      +  ++ D+  +DG                  
Sbjct: 530 HVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG------------------ 566

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTT 900
                    +      QK++DQA S N   D    +        L      A+  GLKT 
Sbjct: 567 --------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTL 618

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      +  L  
Sbjct: 619 YYQNTRDGAEDVQEDLDD 636


>gi|239917557|ref|YP_002957115.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838764|gb|ACS30561.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
          Length = 725

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 178/710 (25%), Positives = 296/710 (41%), Gaps = 75/710 (10%)

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EY 295
           +        H+++         Y+++             F+ V    D  Y+  F F  +
Sbjct: 59  HVNTNTVFFHDLEEK-----LDYLQKNDYYETETFEQYPFEFVRGLFDRAYKAKFRFPTF 113

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    Y  Y L   +G R  E  +     VA+ LA  + E    A    + + +  F  
Sbjct: 114 LGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGDQE---LATHLVDEMIAGRFQP 170

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG  +  +L SCFL  + D++  I   +     L+K  GG+    T +R  GA
Sbjct: 171 ATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGA 230

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 231 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADE 290

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +V  ++ +   E  +  + YE   D  
Sbjct: 291 KIRIKTLSLGVVIPDITFQLAKKNEDMYLFSPYDVERVYGVPFSEISVTEKYYEMVDDAR 350

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                 KISA   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S
Sbjct: 351 I--KKTKISAREFFQTIAEIQFESGYPYVVFEDTVNAAN--PIKGRITMSNLCSEILQVS 406

Query: 593 SSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDIN 639
            + E               CNLGS+N+         D      ++ TA+R L  V +  +
Sbjct: 407 EASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMDSPDFGRSVETAIRALTAVSVMSD 461

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
             ++    K N    AIGLG M     L   H+ Y S E ++  +     + FHA+ AS 
Sbjct: 462 IQSVPSIAKGNAASHAIGLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASN 521

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
            +A E    +  F+ S +  G F               +AE+  +  +   ++  W ELK
Sbjct: 522 RIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELK 581

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   G+ N N  A+ PT +I+ I   + SI P    + ++                  
Sbjct: 582 ASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVASKIEIRK----------------- 624

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + ++  + +  A+EI    +I++ +   + +DQ 
Sbjct: 625 -------EGKLGRVYYPA------PYLTNENLEYYEDAYEIGYEKIIDTYAAATQHVDQG 671

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+  D  + + L+     AW  G+KT YY+R R    +E + ++G 
Sbjct: 672 LSLTLFFKDTATTRDLNRAQIYAWRKGIKTIYYIRLRQLA-LEGTEVEGC 720


>gi|211638142|emb|CAR66768.1| ribonucleoside-diphosphate reductase 1 subunit alpha (ec 1.17.4.1
           (ribonucleoside-diphosphate reductase 1 r1 subunit)
           (ribonucleotid reductase 1) (b1 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
          Length = 626

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 173/661 (26%), Positives = 276/661 (41%), Gaps = 67/661 (10%)

Query: 288 ERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFY 343
            RD  F Y  ++ L  +Y +   + G   E  Q  ++ VA  L     ++ +      FY
Sbjct: 1   WRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSSYPKETRLDYIRRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S+F     TP +    T   Q SSC L    D L  I               G+G +
Sbjct: 61  DAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSLDSINATSSAIVKYVSQRAGIGIN 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              +R +G+ I        G IPF K       + +QGG R GA   +   WH++VE  L
Sbjct: 121 AGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLEVESLL 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEI 520
            L+ N G +  R   M+    +  L  +R+ +    TLFSP +V  L+D +     EFE 
Sbjct: 181 VLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEDITLFSPSDVPGLYDAFFTNQDEFER 240

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVV 579
            Y  YE+ ++  +    +++ AV L+  M+     TG  +I   D CN  SP    V  V
Sbjct: 241 LYTKYEQDSNIRQ----QRLKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPSVAPV 296

Query: 580 HSSNLCTEIT--------LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
             SNLC EI         +N  + E A+C L + NL A       + D+L      AVR 
Sbjct: 297 RQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFNLGAIE-----NLDELEELAILAVRA 351

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LD ++D   + I  AK+     R +G+G++ +   L      Y+   A  +  ++ E I 
Sbjct: 352 LDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHGARYSDGSANNLTHKTFEAIQ 411

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           ++ + AS ELA+E+GA   FK + + QG+ PID+         +   N      W+ L+ 
Sbjct: 412 YYLLKASNELAKEQGACPWFKETTYSQGILPIDTYKKTL----DTLTNEPLHYDWETLRS 467

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +K  G+RNS   ++ P+ T + I   +  I+P    + +K++  G    V         
Sbjct: 468 DIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISIKASKDGILRQVVPEY----- 522

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +R   D  ++  +  +DG +                                QK+IDQ+ 
Sbjct: 523 ERLKGDYELLWQMPGNDGYLQ--------------------------LVGIMQKFIDQSI 556

Query: 872 SLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           S N   D    PSGK    +L      A+  G+KT YY  +R      +  L+ V    +
Sbjct: 557 SANTNYDPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHNTRDGAEDVQDDLEEVVESAD 616

Query: 925 A 925
           +
Sbjct: 617 S 617


>gi|111023402|ref|YP_706374.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           jostii RHA1]
 gi|110822932|gb|ABG98216.1| ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1]
          Length = 693

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 177/694 (25%), Positives = 296/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +EE      + +       V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLVEENYYEPEVLDQYSRA-FVKSLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E+ A +  + + +  F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + VR  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D+       KI A   ++ 
Sbjct: 275 TFELAKKNEDMYLFSPYDVERIYGVPFADVNVTEKYYEMVDDKRIR--KSKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 IAELQFESGYPYIMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYSEVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D    +++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFARTIEVSIRALTAVSDQTHIYSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS  +A ERG  +  F  S
Sbjct: 446 IGLGQMNLHGYLARERIYYGSDEGIDFTNIYFYTVVFHAVRASNRIAIERGTHFKGFPQS 505

Query: 715 LWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       + E + E          ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 506 KYASGEYFDKYTDQVWEPKTERVRQLFAESGVHIPTQDDWRELKASVQKYGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINYSTSSIHPVASKIEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    ++++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYLTNDNLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDI 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|116747708|ref|YP_844395.1| ribonucleotide-diphosphate reductase subunit alpha [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696772|gb|ABK15960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophobacter fumaroxidans MPOB]
          Length = 728

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/654 (27%), Positives = 288/654 (44%), Gaps = 80/654 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  L +L  RY    + G  IE P+  F RVA  +A  +       + E+ A  FY
Sbjct: 10  LRMTPNALVVLRKRYLEKDDEGKPIETPEELFWRVARTIAQADVAFQGPEKAEETADRFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L++S  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 70  ALMTSLDFIPNSPTLMNAGRPLGQLSACFVLPVEDSIDSIFEAIKHAAMIHKSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F+ V +     + QGG R+GA    L   H D+E+F+
Sbjct: 130 FSRIRPENDKVLSTQGVASGPVSFMSVFDTATETIKQGGTRRGANMGILRVDHPDIEKFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D  R  + N +  + D FMK V ++A + L SP     +             
Sbjct: 190 TCKT----DNDRMTNFNISIAVTDSFMKAVEEDAEYELISPRTRERV------------- 232

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                         + +SA  ++ ++    +  G P I F D  N  +P  HVG + S+N
Sbjct: 233 --------------QSLSARKVFDEITQSAWRNGEPGIIFLDVMNRHNPTPHVGEIESTN 278

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L         CNLGSINL +   +   DY+ L   +  AV  LDNVI++N + +
Sbjct: 279 PCGEQPLLPYES----CNLGSINLASMHRDGNIDYEHLKEVVWDAVHFLDNVIEVNNYPL 334

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           +  +     +R IGLG+MGF   L  L +PY S  AVE A++ M FI   + +AS    +
Sbjct: 335 QIIEDMTRGNRKIGLGVMGFSDLLISLGVPYNSEAAVETAEKVMSFIQQESKAASAHYGK 394

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERG + ++ GS++++   P                                   MRN+  
Sbjct: 395 ERGNFVNYAGSIYERPETPH----------------------------------MRNATT 420

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI+ I G S  I+P +   +V+  + G +   V+       ++R  + + ++ 
Sbjct: 421 TTIAPTGTISIIAGCSSGIEPLFAISFVRKVLDGQELVEVHPLFQKVARERGFYSDDLMK 480

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +    GSI N   IP D++ +  T+ ++ P W I   +  QK  D A S  +      +
Sbjct: 481 KI-AEKGSIKNFLEIPADVRNVFVTSHDVTPDWHIRIQAAFQKHTDNAVSKTINFPFSAT 539

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
            + +   Y QA+ +G K     R  S   V+   ++         P   P+ +T
Sbjct: 540 PEDVSSAYLQAYKLGCKGLTIYRDGSR-DVQVLNIQRKPQYPQVEPRPRPDRTT 592


>gi|167039475|ref|YP_001662460.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter sp. X514]
 gi|300915422|ref|ZP_07132735.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307725199|ref|YP_003904950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
 gi|166853715|gb|ABY92124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X514]
 gi|300888482|gb|EFK83631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307582260|gb|ADN55659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
          Length = 770

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/634 (29%), Positives = 288/634 (45%), Gaps = 84/634 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   +K A        FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL       +     DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-ARRGSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +E + + +   Y  A+ +G K     R  S  S 
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQ 563


>gi|270265354|ref|ZP_06193615.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270040758|gb|EFA13861.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 693

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/732 (25%), Positives = 303/732 (41%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H ++    E     +EEG   + +     
Sbjct: 14  DKDRLAARH---------YFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEQAVLA-QY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFSCIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390
           +T   + A +    + S  F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 120 DT---RLAQDLVEEMISGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVEQV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   E  ++ E Y    D   I+  R I+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGVPFSEISVS-EKYREMVDDKRIRKSR-INAREFFQVLAEIQFESGYPYMMFEDTVNRE 354

Query: 571 SPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI                   +   CNLGS+N+         D 
Sbjct: 355 N--PIAGRINMSNLCSEILQVNRASTYHDDLSYDRVGKDISCNLGSLNIA-----KTMDA 407

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 + TA+R L  V D++   ++    + N +  AIGLG M     L    I Y S 
Sbjct: 408 PDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQMNLHGYLARERIFYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           E ++  +     +++HAI AS  LA ER  A+  F+ S +  G +           R E 
Sbjct: 468 EGIDFTNIYFYTVAYHAIRASNRLAIERGSAFEGFEHSTYASGDYFTKYTEREWLPRTER 527

Query: 737 A--------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                    +    R  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSR 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D  + +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLEYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YDIGPEKIIDTYAAAGQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVQGC 688


>gi|219883064|ref|YP_002478228.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
 gi|219862070|gb|ACL42411.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 726

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/720 (26%), Positives = 302/720 (41%), Gaps = 76/720 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     +K+           L  E     +E       L E    F+ V       Y++
Sbjct: 48  REAARQYFKQHVNMNTVFFHDL-AEKLDYLVENRYYEPELLE-QYGFEFVKSLFQRAYKK 105

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R +E  +     VA+GLA  +      A +  + +
Sbjct: 106 KFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVTMVALGLAAGDK---ALAEKLVDEI 162

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  NSG  +  +L SCFL  + D++  I  A+     L+K  GG+    T
Sbjct: 163 IDGRFQPATPTFLNSGKAQRGELVSCFLLRIEDNMESISRAINSALQLSKRGGGVAFALT 222

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 223 NVRETGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 282

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   ++    LFSP +V  ++ +   +  +  + Y
Sbjct: 283 KRENADEKIRIKTLSLGVVIPDITFELAKKDEDMYLFSPYDVEKVYGMPFSDINVTEKYY 342

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D        KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 343 EMVDDARI--KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRAN--PIEGKIIMSNLC 398

Query: 586 TEITLNSSS--------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +EI   S+                +   CNLGS+N+         D   L +T+  A+R 
Sbjct: 399 SEILQVSTPTTYNENLNYEVDGIGKDISCNLGSMNIA-----KAMDGGDLGATVEIAIRA 453

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  N   +E   + N    AIGLG M     L   H+ Y SPE+++   + M  +
Sbjct: 454 LTAVSDQSNITAVESVARGNRMSHAIGLGQMNLHGFLAREHVYYGSPESIDFFGKYMAAV 513

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRT 741
           +FHAI AS  +A+ERG  +  F+ S +  G F    +            E+  +  +   
Sbjct: 514 AFHAIRASNLIAKERGVTFDGFERSKYASGEFFDKYVTRSWLPTTERGQELFAKFGITLP 573

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-NMSGDFT 800
           +   W+ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++     G   
Sbjct: 574 TIADWEELKASVMEHGIYNQNLQAVPPTGSISYINNSTASIHPIAAKIEIRKEGKIGRTY 633

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L NE  +                                +  A+EI    +++  
Sbjct: 634 FPAPYLTNENLE-------------------------------YYQDAYEIGYEKIVDMY 662

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 663 AAATEHVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQMA-LEGTEVTGC 721


>gi|317131233|ref|YP_004090547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
 gi|315469212|gb|ADU25816.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
          Length = 762

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 177/663 (26%), Positives = 290/663 (43%), Gaps = 86/663 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                    +L  RY +   +G   E  +  F RVA  +A  +       + +  A  FY
Sbjct: 1   MDITPNARTVLEKRYLIRDADGRPTETIEELFHRVADAIAAPDRTYNPDADIKALADRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
             ++   F+ ++PTL N+G    QL++CF+  V D +  IF A+++ A++ K  GG G  
Sbjct: 61  ARMTKLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSMEAIFEAIKQAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G + F++V N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGSTVNTTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +KN  D      + N +  I + FM+ V  +  + L  P+                  
Sbjct: 181 DCKKNNAD----ITNFNISVGITEAFMRAVEADEEYDLIDPNTKE--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          ++SA  ++ K++   +  G P I F D  N  +    VG + S+N
Sbjct: 222 ------------STGRLSAREVFEKIVDAAWRNGEPGIIFLDRLNRDNMVPSVGAIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         CNLGS+NL       +      ++DKLA  +R AV  LDNVID 
Sbjct: 270 PCGEQPLLPYE----ACNLGSVNLHRMLRRQEDGASVINWDKLADVVRDAVHFLDNVIDA 325

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +        R IGLG+MG+   L  L IPY S EAV + ++ M FI+  A SAS
Sbjct: 326 NRYPLAQIDHMTKQTRKIGLGVMGWADLLLELGIPYNSDEAVALGEKVMGFITDTARSAS 385

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LAQ RGA+  F+ S    G                                      +
Sbjct: 386 AGLAQVRGAFPLFEESTLKNGT------------------------------------PV 409

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT T++ I G S  ++P +  +++++ M G +    N  L   L++R L+ 
Sbjct: 410 RNATMTTIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTELVEANPVLRQLLEERGLYS 469

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E ++  +   +GS+ +I+ +P+D++++   A +I P + I+  +  Q+  D A S  +  
Sbjct: 470 EDLMRQI-AQEGSLAHIDALPEDIRRVFVCAHDISPEYHIKMQAAFQRRTDNAVSKTVNF 528

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             + +   +  +Y  A+ +G K     R  S  +   +  K    K  A       S T 
Sbjct: 529 AHDATIADVRRVYMLAYELGCKGVTIYRDGSRDAQVLNIGKVNAEKPAATEAAPSVSGTA 588

Query: 937 SLG 939
              
Sbjct: 589 RAA 591


>gi|18202755|sp|Q9CBQ0|RIR1_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
          Length = 721

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/755 (24%), Positives = 309/755 (40%), Gaps = 86/755 (11%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRREVLTTV-----YKKPQKATHHEMQCL 251
           + +S  ++  E +Y  + A   L          ++VL        +        H     
Sbjct: 10  VTASTHMLSNETDYHALNAMLNLYDADGKIQFDKDVLAARQFFLQHVNQNTVFFHNQ--- 66

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI- 309
             E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   
Sbjct: 67  -DEKLDYLIRENYYEREVLDQYSR-NFVKSLLDRAYAKKFRFSTFLGAFKYYTSYTLKTF 124

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367
           +G R  E  +     VA+ LA  +T     A +  + +    F  +TPT  NSG  +  +
Sbjct: 125 DGKRYLERLEDRVCMVALTLAAGDTG---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGE 181

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 182 PVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVALLLSNIREHGAPIKNIEHQSSGVIPI 241

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 242 MKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVIIPD 301

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +   +N    LFS  +V  ++++   +  +  + YE   D        KI A   ++
Sbjct: 302 ITFELAKRNEDMYLFSSYDVERVYEVPFADISVTEKYYEMLDDARIR--KTKIKAREFFQ 359

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
           K+  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S+              
Sbjct: 360 KLAELQFESGYPYVMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVG 417

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
           +   CNLGS+N+         D    A T+  A+R L  V D     ++   ++ N+   
Sbjct: 418 KDISCNLGSLNIA-----KTMDSPDFAQTVEVAIRALTAVSDQTHIKSVPSIEQGNNDSH 472

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKG 713
           AIGLG M     L    I Y S E V+  +     + FH + AS  +A ERG +   F+ 
Sbjct: 473 AIGLGQMNLHGYLSREGIFYGSEEGVDFTNIYFYTVLFHVLLASNSIAIERGTFFKGFER 532

Query: 714 SLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F    I    E +         E A+   ++  W  LK+ V   G+ N N  A
Sbjct: 533 SKYASGEFFDKYIEQTWEPKTDKVRQLFAEAAIRIPTQNDWKRLKELVVAHGIYNQNLQA 592

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 593 VPPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVY 628

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 629 YPA------PYMTNDNLQYYQDAYEIGYQKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 682

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 683 VNKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 716


>gi|297568305|ref|YP_003689649.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924220|gb|ADH85030.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 755

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 175/646 (27%), Positives = 292/646 (45%), Gaps = 78/646 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
            F    + +L  RY      G  +E PQ    RVA  +A  E       + E  A+EFY 
Sbjct: 20  KFSANAMTVLKRRYLKKDEQGKVLESPQRMLWRVASTIANSERLYDATADTEALAMEFYR 79

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 80  LMAELDFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 139

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 140 SRIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ + +N  + L +P                    
Sbjct: 200 VK----SDLDVLHNFNLSVAITDEFMRALAENGDYALINP-------------------- 235

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     ++ R  +A  L+R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 236 -------RNGEIVRYQNAAKLFRQIVKQAWLSGEPGVVFIDRINAENPTPEAGEIESTNP 288

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     + + DY++L   + TAV  LDNV+DIN + + 
Sbjct: 289 CGEQPLLPYES----CNLGSINLANMVKDGKLDYERLGYCVDTAVHFLDNVVDINNYPLP 344

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++    +R IGLG+MGF   L  L IPY+S EAVE+A+  M FI   A+ AS+ L + 
Sbjct: 345 EIEQVTKQNRKIGLGVMGFADLLVQLEIPYSSQEAVELAEALMRFIDERALKASIALGKS 404

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+ +F  S++ +                                 +     +RN+   
Sbjct: 405 RGAFPNFPDSIYGR---------------------------------QDPKTPVRNATRT 431

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ + G S  ++P +   +++  M  D    VN       K+   +   ++  
Sbjct: 432 TIAPTGTISILAGCSSGVEPLFAVAFLRRVMDNDELFEVNPRFEKIAKEEGFYSHELVKQ 491

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSG 882
           +  H+G++  +E IP   ++I  TA +I P   I   +  Q+  + A S  + +  + + 
Sbjct: 492 I-AHNGTLAGLEEIPAKYRRIFETAHDITPENHIAIQASFQRHTNNAVSKTINFPHQATE 550

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +++   Y  A+ +  K     R     +   +  K       AVPV
Sbjct: 551 EEVRQAYLLAYELNCKGMTIYRDGCRENQVLNIGKTDKKAAAAVPV 596


>gi|296128312|ref|YP_003635562.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
 gi|296020127|gb|ADG73363.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
          Length = 719

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/749 (24%), Positives = 307/749 (40%), Gaps = 80/749 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+   + +   L + +        R       RE       +     H        E   
Sbjct: 19  LDYHALNAMLNLYDADGKIQFDADRQAA----REYFLQHVNQNTVFFHD-----LDEKLD 69

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             +E       +     D   +       Y + F F  +LG    Y  Y L   +G R  
Sbjct: 70  YLVENKYYDPAVLA-QYDRAFIKSLFQYAYSKKFRFQTFLGAFKYYTSYTLKTFDGKRYL 128

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+ LA  + +    A+   + + S  F  +TPT  N G  +  +  SCFL
Sbjct: 129 ERFEDRVCMVALALAEGDQD---FAMNLVDEIVSGRFQPATPTFLNLGKAQRGEPVSCFL 185

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 186 LRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMKLLED 245

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 246 SFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 305

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N    LFSP +V  ++ +   +  +  + YE   D+       KI+A   ++ +  + 
Sbjct: 306 KKNEPMYLFSPYDVERVYGVPFADVNVTEKYYEMVDDKRIR--KTKINAREFFQTLAEIQ 363

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCN 601
           FE+G+P++ F+D  N  +     G +  SNLC+EI   S+                  CN
Sbjct: 364 FESGYPYVMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSTFNEDLSYDHVGRDISCN 421

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         D   L  T+ TA+R L  V D  N  ++   K++N    AIGLG 
Sbjct: 422 LGSMNIAL-----SMDSPDLGKTVETAIRALTAVSDQTNIESVPSIKRANAGGHAIGLGQ 476

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +     +++HAI AS  LAQER A +  F+ S +  G
Sbjct: 477 MNLHGYLARERIFYGSDEGLDFTNIYFYTVAYHAIRASNLLAQERKASFFGFERSAYATG 536

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +    + R        DE  ++  ++  W EL + V+  G+ N N  A+ PT +
Sbjct: 537 EYFTKYVEKEWKPRTARVQALFDEAGVHIPTQDDWRELAELVRVHGLYNQNLQAVPPTGS 596

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 597 ISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA--- 629

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + L+    
Sbjct: 630 ---PFMTNDNLEYYQDAYEIGFEKVIDTYAEATQHVDQGLSLTLFFKDTATTRDLNKAQI 686

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    ++ + ++  
Sbjct: 687 YAWKKGIKTIYYIRLRQMA-LQGTEVENC 714


>gi|307266246|ref|ZP_07547787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918696|gb|EFN48929.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/634 (29%), Positives = 288/634 (45%), Gaps = 84/634 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   +K A        FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL       +     DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-ARRGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +E + + +   Y  A+ +G K     R  S  S 
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQ 563


>gi|195953681|ref|YP_002121971.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933293|gb|ACG57993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 1005

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/690 (33%), Positives = 355/690 (51%), Gaps = 69/690 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVE----------------------EACSGLQDVSSKIVL 182
           ++++   G     +  ++  ++E                           L +++   ++
Sbjct: 1   MEVIKRSGAREKLDLLKIRTVLENALSLLKEWKTTKDISAQDIEEWTMEDLNEINIDEIM 60

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            +   N++DG+  + +   ++ S  T    +P Y  +    LL+++ ++    +Y     
Sbjct: 61  EDIEINIFDGIETAAIFQHILHSLLTRAIDDPIYDAMARNVLLQRIYKQAFGGMYSP--- 117

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-DLVYLANDLKYERDFAFEYLGLQIL 301
                 +  Y E F  YI+  V+  LL E +  + DL  LA +L  +RD   ++ GL  L
Sbjct: 118 ------KKAYKELFIDYIDNAVELGLLDEKLASYYDLEMLALELVPKRDQLLKFNGLYNL 171

Query: 302 YDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTP 356
            DRY +     G+ +E PQ F+MRVAMG+AL E   E     A+EFY+++SS  F+ STP
Sbjct: 172 MDRYLIKDLDTGNILEAPQWFWMRVAMGVALVEKTPEDRNHWAIEFYHMMSSMEFIPSTP 231

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGTR PQLSSCF+    DDL  IF  +++  ML K++GG+G   T +R   + I  
Sbjct: 232 TLFNSGTRFPQLSSCFVVDEEDDLSKIFETVKQVGMLNKHAGGVGLPATKLRAKDSIIRS 291

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             GKS G+IPFLK+ ++T  AV+QGG+R+G+  A LE WH+DV +F+  ++  GDD +R 
Sbjct: 292 IQGKSSGIIPFLKIIDETITAVSQGGRRRGSALASLEPWHLDVFDFVRTKRKWGDDSQRF 351

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            ++  A ++ D FM+RV +N  W LF P +   L   YGK+F   Y    R+A  G+I+ 
Sbjct: 352 KNLKIALFLNDEFMRRVEENGDWYLFDPADCPKLVSTYGKKFSREYSKCIRKALSGKIR- 410

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +KI AV L+++ +    +TG PW TFKDP NIR P +H G + ++NLCTE  L S+ + 
Sbjct: 411 HKKIKAVELFKEAIENTIQTGEPWYTFKDPINIRHPNKHTGTILTTNLCTEQLLVSTYDS 470

Query: 597 TAVCNLGSINLL--------------------------AHFANNQFDYDKLASTIRTAVR 630
              CNLGS+ L                              +NN FD++K  + IR A+R
Sbjct: 471 IESCNLGSLVLPRALLTHFRVNEHAQPLNSSENGSKHTKFLSNNTFDWEKFKAVIRKAIR 530

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + +E  +K     R IGLG MG+Q  +  L +P  S EA+++ D+  E +
Sbjct: 531 FLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKLPVDSKEALKLLDKIGETM 590

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S+ AI  SVELA+ERG Y +F GS W +G+ PID++  L   R       T+        
Sbjct: 591 SYVAIETSVELAKERGTYPNFDGSDWSKGILPIDTLEHLFRERSLTNDKYTTPY-----N 645

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             V+     N    +       A     S+
Sbjct: 646 DMVQNYADENRAVQSRFDDREHAQPLNSSE 675



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+EL+++VK  G+RN+    +APTATI+ I G SQS +P Y  +Y ++N++G F  VN  
Sbjct: 746 WEELREKVKQ-GIRNACQTTLAPTATISIIAGTSQSFEPYYALVYSRTNIAGRFLEVNEN 804

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            + +LK+  LW + +  D+    GSI +I+ IP ++K I+ TA+EID    I+ A+  QK
Sbjct: 805 FIRDLKKLGLW-DRLREDVLLQQGSIQDIKEIPQEIKDIYKTAYEIDTEVYIKQAAVLQK 863

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           WID + S NLY +    +K+  IY +AW  GLK TYY
Sbjct: 864 WIDSSISRNLYFNTRDPQKIMEIYLKAWKYGLKATYY 900


>gi|226305839|ref|YP_002765799.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
 gi|226184956|dbj|BAH33060.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
          Length = 727

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 296/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +EE      + +       V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 73  DEKLDYLVEENYYEPEVLDQYSRT-FVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFD 131

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA      E  AVE  + + +  F  +TPT  NSG  +  + 
Sbjct: 132 GKRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEP 188

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +
Sbjct: 189 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIM 248

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 249 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 308

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  ++ + YE   D+       KI A   ++ 
Sbjct: 309 TFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDKRIR--KSKIKAREFFQT 366

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 367 VAELQFESGYPYIMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D    +++   ++ N+   A
Sbjct: 425 DISCNLGSLNIA-----KTMDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ER   +  F  S
Sbjct: 480 IGLGQMNLHGYLARERIFYGSVEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539

Query: 715 LWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E        +  +  ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 540 KYASGEFFDKYTDQVWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRK------------------------EGKIGRVYY 635

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    ++++ +   + +DQ  SL L+  D  + + +
Sbjct: 636 PA------PYLTNDNLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDI 689

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 690 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 722


>gi|256751879|ref|ZP_05492751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749286|gb|EEU62318.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 770

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/634 (28%), Positives = 286/634 (45%), Gaps = 84/634 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +       + E     FY
Sbjct: 1   MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL       +     DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-ARRGSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +E + + +   Y  A+ +G K     R  S  S 
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQ 563


>gi|153010277|ref|YP_001371491.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562165|gb|ABS15662.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           anthropi ATCC 49188]
          Length = 739

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 178/693 (25%), Positives = 293/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y + F F  +LG    Y  Y L   +G
Sbjct: 86  EKIDYLVTEGYYEQEVLD-QYSFNFVRDLFDEAYAKKFRFPTFLGAFKYYTSYTLKTFDG 144

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA      E+ A      + +  +  +TPT  N+G  +  +L 
Sbjct: 145 KRYLERYEDRVCMVALTLARG---NEQLARNLMEEIIAGRYQPATPTFLNAGKKQRGELV 201

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 202 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMK 261

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 262 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 321

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  I  E Y    D       +KI+A   ++ +
Sbjct: 322 FELAKNNEDMYLFSPYDVERVYGVPLTEISIT-EKYRELVDDAR-ITKKKINAREFFQVL 379

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 380 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASIFGEDLSYDHLGKD 437

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ +       D      TI T++R L  V D++   ++    + N    AI
Sbjct: 438 ISCNLGSLNIAS-----AMDSSDFGKTIETSIRALTAVSDMSQIGSVPSVARGNDESHAI 492

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HAI AS  +A E   ++  F+ S 
Sbjct: 493 GLGQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVETGKSFKGFEKSK 552

Query: 716 WDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       L         E+ ++  +   ++  W +LK  V   G+ N N  A+ 
Sbjct: 553 YATGEYFAKYTEQLWEPATQKVREIFEKAGIAIPTQDDWRDLKNAVMEGGLYNQNLQAVP 612

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 613 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 648

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 649 AAFMTN------DNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 702

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +  + ++G 
Sbjct: 703 RAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 734


>gi|325675840|ref|ZP_08155524.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
 gi|325553811|gb|EGD23489.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
          Length = 728

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 188/742 (25%), Positives = 309/742 (41%), Gaps = 80/742 (10%)

Query: 213 EPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           E +Y  + A   L            RE     + +           L  E     + E  
Sbjct: 27  ELDYHALNAMLNLYGPSGEIQFDKDREAAKQYFLQHVNQNTVFFHNL-DEKLDYLVRENY 85

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
             R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 86  YEREVLDQYSR-NFVKWLIDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRV 144

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A E  + + +  F  +TPT  NSG  +  +  SCFL  + D++
Sbjct: 145 CMVALTLAAGD---ETLATELVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNM 201

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    T VR  GA I     +S GVIP +K+  D+    NQ
Sbjct: 202 ESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQ 261

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 262 LGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMY 321

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ +   +  +  E Y    D   I+  + I A   ++ +  + FE+G+P+
Sbjct: 322 LFSPYDVERIYGVPFADINVT-EKYHEMVDDKRIRKSK-IKAREFFQTLAELQFESGYPY 379

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+ 
Sbjct: 380 IMFEDTVNRAN--PIAGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIA 437

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A TI T++R L  V D    +++   ++ N+   AIGLG M     L
Sbjct: 438 L-----TMDSPDFAKTIETSIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYL 492

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HAI AS  +A+ERG  +  F  S +  G +     
Sbjct: 493 ARERIFYGSEEGIDFTNIYFYSVVYHAIRASNLIAKERGTHFKGFPESDYASGKYFDKYT 552

Query: 727 GLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E + E          ++  ++  W ELK  V+  G+ N N  A+ PT +I+ I   
Sbjct: 553 DQVWEPKTEKVRQLFADAGIHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGSISYINNS 612

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 613 TSSIHPVAAKIEIRK------------------------EGKIGRVYYPA------PYLT 642

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 643 NDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGI 702

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 703 KTLYYIRLRQMA-LEGTEVEGC 723


>gi|254820781|ref|ZP_05225782.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           intracellulare ATCC 13950]
          Length = 693

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/694 (25%), Positives = 296/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I+E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIKENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLASGDT---ILAEKLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ L   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKKNEDMYLFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSVFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNESHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG+ +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIHYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGSKFGGFERS 505

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F               + E+  E  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTEQVWEPATPRVREIFAEAGIRIPTQDDWRRLKESVQEHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPVASKIEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQLA-LEGTEVEGC 688


>gi|57234895|ref|YP_181092.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           ethenogenes 195]
 gi|57225343|gb|AAW40400.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 761

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/662 (27%), Positives = 287/662 (43%), Gaps = 85/662 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E       +   R  EFY
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           N+++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NIMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +   G       + N +  I D FM+ V     + L +P                   
Sbjct: 200 HAKDKAGV----LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGE--------------- 240

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  +++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 241 ------------VVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DY KL+  +++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPYES----CNLGSINLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG+MGF   L  L IPY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L   +G+  +   +P + K++  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLA--EGAHLDEADVPAEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E     +  +Y+ A    LK     R  S      ST K  +       V +PN +   
Sbjct: 548 REAVEGDVAEVYKMAHDSNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPNLAPRK 607

Query: 938 LG 939
             
Sbjct: 608 RS 609


>gi|296171153|ref|ZP_06852601.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894289|gb|EFG74044.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 721

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/741 (25%), Positives = 306/741 (41%), Gaps = 78/741 (10%)

Query: 213 EPNYAKVTARFLLEK------LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVK 265
           E +Y  + A   L          ++VL       Q    + +      E     I E   
Sbjct: 20  ETDYHALNAMLNLYDADGKIQFDKDVLAAREYFLQHVNQNTVFFHNQDEKLDYLIRENYY 79

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFM 322
            R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  +   +
Sbjct: 80  EREVLDQYSR-NFVKALMDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVV 138

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY 381
            VA+ LA  +T     A +  + +    F  +TPT  NSG  +  +  SCFL  + D++ 
Sbjct: 139 MVALTLAAGDTG---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNME 195

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 196 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQL 255

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    L
Sbjct: 256 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 315

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP +V  ++ L   +  +  + YE   D        KI A   ++ +  + FE+G+P+I
Sbjct: 316 FSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGYPYI 373

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+  
Sbjct: 374 MFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA- 430

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D    A TI  A+R L  V D     ++   ++ N+   AIGLG M     L 
Sbjct: 431 ----KTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLA 486

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
              I Y S E ++  +     + +HA+ AS  +A ER  A+  F+ S +  G F      
Sbjct: 487 RERIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGKAFGGFERSKYKSGEFFDKYTD 546

Query: 728 LLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            + E        +  +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   +
Sbjct: 547 QVWEPQTDKVRQLFADAEIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHST 606

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P    + ++                         E  I  + Y          + +
Sbjct: 607 SSIHPIASKVEIRK------------------------EGKIGRVYYPA------PYMTN 636

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           D  +    A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 637 DNLEYFQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIK 696

Query: 899 TTYYLRSRSATSVEKSTLKGV 919
           T YY+R R    +E + ++G 
Sbjct: 697 TLYYIRLRQMA-LEGTEVEGC 716


>gi|269794348|ref|YP_003313803.1| ribonucleoside-diphosphate reductase class Ib subunit alpha
           [Sanguibacter keddieii DSM 10542]
 gi|269096533|gb|ACZ20969.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 693

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/694 (25%), Positives = 294/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +E       +         V    DL Y + F F  +LG    Y  Y L   +
Sbjct: 39  EEKLEYLVENKYYEPEILAKYTPA-FVKSLFDLAYSKKFRFETFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E  AV     + +  F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVCMVALTLADGD---ETTAVNVVEEIIAGRFQPATPTFLNSGKAQRGEA 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     +  I+ E Y    D G I+  + I A   ++ 
Sbjct: 275 TFELARKNEDMYLFSPYDVERVYGKPFADVAIS-EKYHEMVDDGRIRKTK-IKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S+               
Sbjct: 333 LAELQFESGYPYVMFEDTVNAAN--PIKGRITHSNLCSEILQVSTPSTYNDDLSYEHIGR 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI TA+R L  V D     ++   +++N +  A
Sbjct: 391 DISCNLGSMNIA-----KAMDSPDFAKTIDTAIRALTAVSDQTSIDSVPSIRRANESGHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    + Y S E ++  +     ++FHAI+AS  LA ER   +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERVFYGSEEGIDFTNIYFYTVAFHAIAASNRLAIERKRFFGGFEDS 505

Query: 715 LWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       + E        +  +  ++  ++  W ELK  V   G+ N N  A+
Sbjct: 506 KYATGEYFDKYTDQVWEPATDRVRQIFADAGVHIPTQQDWAELKASVMEHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINNSTSSIHPVASKIEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NRAQIYAWRKGIKTLYYIRLRQLA-LEGTEVEGC 688


>gi|167036756|ref|YP_001664334.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115179|ref|YP_004185338.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855590|gb|ABY93998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928270|gb|ADV78955.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 770

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/634 (28%), Positives = 285/634 (44%), Gaps = 84/634 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +       + E     FY
Sbjct: 1   MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL       +     DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K++   A +ID  W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-ARRGSLKDIKGIPEDVKRVFVIAHDIDHEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +E + + +   Y  A+ +G K     R  S  S 
Sbjct: 530 NEATVEDVRRTYLLAYKLGCKGVTIYRDGSRESQ 563


>gi|294853319|ref|ZP_06793991.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818974|gb|EFG35974.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 738

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/678 (25%), Positives = 290/678 (42%), Gaps = 70/678 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 85  EKLDYLVAEGYYEQTVLD-QYSFNFVRDLFDEAYARKFRFPTFLGAFKYYTSYTLKTFDG 143

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E+ A +    + S  +  +TPT  N+G  +  +L 
Sbjct: 144 KRYLERYEDRVCMVALTLARGD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELV 200

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 201 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMK 260

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 261 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 320

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V  ++ +   E  +  E Y    +  +I   +KI+A   ++ +
Sbjct: 321 FELARNNEDMYLFSPYDVQRVYGVPLTEISVT-EKYREMVNDAQIAK-KKINAREFFQVL 378

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G +  SNLC+EI                   + 
Sbjct: 379 AEIQFESGYPYIMFEDTVNRAN--PIDGRITMSNLCSEILQVSEASLFHEDLSYEYLGKD 436

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D++    +    + N    AI
Sbjct: 437 ISCNLGSLNIAA-----AMDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAI 491

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HA+ AS  +A E   ++  F+ S 
Sbjct: 492 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSK 551

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +  + ++  +   ++  W  LKK V   G+ N N  A+ 
Sbjct: 552 YASGEYFDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVP 611

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 612 PTGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYP 647

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 648 AAFMTN------DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 701

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 702 RAQIYAWKKGIKTIYYIR 719


>gi|255327221|ref|ZP_05368296.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295839|gb|EET75181.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 726

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/761 (24%), Positives = 316/761 (41%), Gaps = 83/761 (10%)

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ++    + G+S  +L   L      L ++         R    +         +      
Sbjct: 19  KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQ-----YFLQHVNNNTV 68

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILY 302
             H+++    E     IE       L     +F  +       Y   F F  +LG    Y
Sbjct: 69  FFHDLE----EKIEYLIENQYYEPEL-FDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFY 123

Query: 303 DRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             Y L   +G R  E  +     VA+ LA      EK A +  + + S  F  +TPT  N
Sbjct: 124 TSYALKTFDGQRYLERFEDRVCMVALLLAEG---NEKLAEDIVDEIISGRFQPATPTFLN 180

Query: 361 SGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  +  +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     
Sbjct: 181 AGKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 240

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   +
Sbjct: 241 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTL 300

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    IPD+  +   +N    LFSP +V  ++ +   +  ++ + YE   D        K
Sbjct: 301 SLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARI--TKSK 358

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---- 595
           I+A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S       
Sbjct: 359 INAREFFQTIAEIQFESGYPYVMFEDTVNRAN--PIAGKIIMSNLCSEILQVSEPSTYHA 416

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKA 646
                   +   CNLGS+N+         D D    T+ TA+R L +V D +   ++   
Sbjct: 417 DLGYETVGKDISCNLGSLNIAL-----TMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSI 471

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           ++ N    A+GLG M     L   H+ Y S EA++  +     +++HAI AS+++A+ER 
Sbjct: 472 ERGNGMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRASMQIAKERG 531

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759
             +  F+ S +  G F    I      + E         +  +R  W +L   V   GM 
Sbjct: 532 QRFEGFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMY 591

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N N  A+ PT +I+ I G + SI P    + ++                         E 
Sbjct: 592 NQNLQAVPPTGSISYINGSTSSIHPIASKIEIRK------------------------EG 627

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
            +  + Y          + ++  + +  ++EI    +I++ +   + +DQ  SL L+  D
Sbjct: 628 KLGRVYYPA------PYMTNENLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRD 681

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 682 TATTRDINRAQIYAWRKGIKTIYYIRLRQMA-LEGTEVEGC 721


>gi|85723395|gb|ABC78338.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 771

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 168/666 (25%), Positives = 298/666 (44%), Gaps = 82/666 (12%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
           +L  +  D ++    + +      +     +++L  RY     +G+ +E P   F RVA 
Sbjct: 19  ILQFTRSDSEMKKRTSSIDIS---SLTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVAD 75

Query: 327 GLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A  +       +    + +FY ++++  F+ ++PTL N+G    QLS+CF+  V D +
Sbjct: 76  TIAAADRIFNDQADTAGLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSM 135

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF A++  A++ K  GG G  ++ +R     +  T G S G I F++V +     + Q
Sbjct: 136 EDIFDAVKFTALIHKSGGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQ 195

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R+GA    L   H D+  F+  +     D+ + ++ N +  + ++FM  V  +  + 
Sbjct: 196 GGTRRGANMGILRVDHPDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYD 251

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L +P +                            +V   ++A  ++ +++   +E G P 
Sbjct: 252 LVNPRDG---------------------------QVIGTLNARKVFDRIVAQAWENGEPG 284

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I F D  N  +P  H+GV+ S+N C E  L         CNLGSINL     N + ++ +
Sbjct: 285 IVFLDRLNRDNPTPHIGVIESTNPCGEQPLLPYES----CNLGSINLGKMVINGEVNWKR 340

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   +  AV  LDNV++IN + +    +    +R IGLG+MG+   L  L IPY S  A+
Sbjct: 341 LRDVVNLAVHFLDNVVEINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRAL 400

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+A+E M+FI+     AS  LA++RG + +FK SL+D+                      
Sbjct: 401 ELAEEVMKFINTEGHDASHALAKKRGPFPNFKESLYDKQG-------------------- 440

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                            +RN+    IAPT TI+ I   S  ++P +   Y++  M  D  
Sbjct: 441 --------------KAPIRNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDIL 486

Query: 801 -VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             +N F     K+R  + + ++  +    G+I +++ +P D++ +  TA +I P   I  
Sbjct: 487 LEINPFFEAMAKERGFYSKELMRKI-AERGTIRDLDEVPQDIQAVFVTAHDISPEVHIGM 545

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  QK+ D A S  +      +   +  ++R A+ +  K     R  S  +   ST K 
Sbjct: 546 QAAFQKYTDNAVSKTVNFAHTATIDDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKE 605

Query: 919 VDGKLN 924
            +  + 
Sbjct: 606 REQPVQ 611


>gi|289705576|ref|ZP_06501968.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
 gi|289557805|gb|EFD51104.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
          Length = 725

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 175/710 (24%), Positives = 294/710 (41%), Gaps = 75/710 (10%)

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EY 295
           +        H+++         Y+++             F+ +    D  Y+  F F  +
Sbjct: 59  HVNTNTVFFHDLEEK-----LDYLQKNDYYETETFEQYPFEFIRGLFDRAYKAKFRFPTF 113

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    Y  Y L   +G R  E  +     VA+ LA  + E    A    + + +  F  
Sbjct: 114 LGAFKFYTSYALKTFDGKRYLERYEDRVAVVALHLARGDQE---LATHLVDEMIAGRFQP 170

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG  +  +L SCFL  + D++  I   +     L+K  GG+    T +R  GA
Sbjct: 171 ATPTFLNSGKKQRGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGA 230

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 231 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADE 290

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +V  ++ +   E  +  + YE   D  
Sbjct: 291 KIRIKTLSLGVVIPDITFQLAKKNEDMYLFSPYDVERVYGVPFSEISVTEKYYEMVDDAR 350

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                 KI+A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S
Sbjct: 351 I--KKTKINAREFFQTIAEIQFESGYPYVVFEDTVNAAN--PIKGRITMSNLCSEILQVS 406

Query: 593 SSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDIN 639
            + E               CNLGS+N+         D      ++ TA+R L  V +  +
Sbjct: 407 EASEYNEDLSYAHVGQDISCNLGSMNIA-----KTMDSPDFGRSVETAIRALTAVSVMSD 461

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
             ++    K N    AIGLG M     L    + Y S E ++  +     + FHA+ AS 
Sbjct: 462 IQSVPSIAKGNAASHAIGLGQMNLHGYLARERVHYGSEEGIDFTNMYFYAVLFHALRASN 521

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
            +A E    +  F+ S +  G F               +A +  E  +   ++  W ELK
Sbjct: 522 RIAIETGQRFGGFEDSKYASGEFFDKYTDQEWAPATERVAGLFAEAGIALPTQDDWRELK 581

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   G+ N N  A+ PT +I+ I   + SI P    + ++                  
Sbjct: 582 ASVMEHGIFNRNLQAVPPTGSISYINNSTSSIHPVASKIEIRK----------------- 624

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + ++  + +  A+EI    +I++ +   + +DQ 
Sbjct: 625 -------EGKLGRVYYPA------PYLTNENLEYYEDAYEIGYEKIIDTYAAATQHVDQG 671

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+  D  + + L+     AW  G+KT YY+R R    +E + ++G 
Sbjct: 672 LSLTLFFKDTATTRDLNRAQIYAWTKGIKTIYYIRLRQLA-LEGTEVEGC 720


>gi|262203178|ref|YP_003274386.1| ribonucleoside-diphosphate reductase subunit alpha [Gordonia
           bronchialis DSM 43247]
 gi|262086525|gb|ACY22493.1| ribonucleoside-diphosphate reductase, alpha subunit [Gordonia
           bronchialis DSM 43247]
          Length = 731

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/742 (24%), Positives = 307/742 (41%), Gaps = 80/742 (10%)

Query: 213 EPNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           E +Y  + A   L            RE     + +           L  E     +EE  
Sbjct: 30  ELDYHALNAMLNLYDADGRIQFEKDREAARQYFLQHVNQNTVFFHDL-DEKLDYLVEENY 88

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D + V       Y + F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 89  YEPEVL-ARYDREFVKSLFGHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRV 147

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  + D++
Sbjct: 148 CMVALTLADGDT---ALARNLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNM 204

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 205 ESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQ 264

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    
Sbjct: 265 LGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKANDDMY 324

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++ +   +  +  + Y    +   I+  + I A   ++ +  + FE+G+P+
Sbjct: 325 LFSPYDVERVYGVPFADINVT-DKYHEMVEDKRIRKTK-IKAREFFQTLAELQFESGYPY 382

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+ 
Sbjct: 383 IMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIA 440

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D   L  TI TA+R L  V D     ++   +K N+   AIGLG M     L
Sbjct: 441 -----KAMDSPDLGQTIETAIRGLTAVSDQTAITSVPSIEKGNNDSHAIGLGQMNLHGYL 495

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HA+ AS ++A+ER  +++ F+ S +  G F     
Sbjct: 496 ARERIFYGSDEGIDFTNIYFYTVLYHALRASNKIARERGHSFAGFEKSKYASGEFFDKYT 555

Query: 727 GLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E        +  +  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   
Sbjct: 556 EKVWEPETQKVRDLFGQAGIHIPTQDDWRELKAAVARDGIYNQNLQAVPPTGSISYINHS 615

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y    + N     
Sbjct: 616 TSSIHPVASKIEIRK------------------------EGKIGRVYYPAPFMDN----- 646

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 647 -DNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGI 705

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 706 KTLYYIRLRQMA-LEGTEVEGC 726


>gi|296393702|ref|YP_003658586.1| ribonucleoside-diphosphate reductase subunit alpha [Segniliparus
           rotundus DSM 44985]
 gi|296180849|gb|ADG97755.1| ribonucleoside-diphosphate reductase, alpha subunit [Segniliparus
           rotundus DSM 44985]
          Length = 732

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 181/746 (24%), Positives = 302/746 (40%), Gaps = 86/746 (11%)

Query: 212 KEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +  +Y  + A   +  L            RE     + +           L  E     +
Sbjct: 30  EHLDYHALNA---MLNLYGPNGEIQFEKDREAANQYFLQHVNQNTVFFHNL-DEKLDYLV 85

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMP 317
           E       + E       V    D  Y + F F  +LG    Y  Y L   +G R  E  
Sbjct: 86  ENEYYEPEVLERYSR-PFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERF 144

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV 376
           +   + VA+ LA  +   E+ A +    +    F  +TPT  N G  +  +  SCFL  +
Sbjct: 145 EDRVVMVALALADGD---EELACQLVEEIIEGRFQPATPTFLNCGKKQRGEPVSCFLLRI 201

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+  
Sbjct: 202 EDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFS 261

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N
Sbjct: 262 YANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRN 321

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               LFSP +V  ++ +   E  +  + +E      E    +KI+A   ++ +  + FE+
Sbjct: 322 DDMYLFSPYDVERVYGVPFAEVSVTEKYFEMV--DDERIRKKKINAREFFQTIAELQFES 379

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGS 604
           G+P+I ++D  N  +     G +  SNLC+EI               S   +   CNLGS
Sbjct: 380 GYPYIMYEDTVNRAN--PIDGRITHSNLCSEILQVSTASTFNADLSYSHVGKDISCNLGS 437

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D      T+ T++R L +V D     ++      N    AIGLG M  
Sbjct: 438 LNIA-----KTMDSPDFGKTVETSIRALTSVSDQTRIDSVPSIAHGNDESHAIGLGQMNL 492

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y S E V+  +     + +HA+ AS ++A ER  A++ F+ S +  G F 
Sbjct: 493 HGYLARERIHYGSEEGVDFTNIYFYTVLYHALWASNKIAVERGRAFAGFERSKYASGEFF 552

Query: 723 IDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +    E + E          +   ++  W+ LK  V   G+ N N  A+ PT +I+ 
Sbjct: 553 DKYLNQTWEPKTERVRELFKRAKVQIPTKADWERLKDSVVAHGIYNQNLQAVPPTGSISY 612

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   + SI P    + ++                         E  I  + Y        
Sbjct: 613 INHSTSSIHPVAAKIEIRK------------------------EGKIGRVYYPA------ 642

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW
Sbjct: 643 PYLANDNLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAW 702

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGV 919
             G+KT YY+R R    +E + ++G 
Sbjct: 703 RKGIKTLYYIRLRQLA-LEGTEVEGC 727


>gi|257069612|ref|YP_003155867.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560430|gb|ACU86277.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
          Length = 710

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/710 (25%), Positives = 302/710 (42%), Gaps = 75/710 (10%)

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EY 295
           +  P     H +     E     +E       + E   DF  +   ++  Y + F F  +
Sbjct: 44  HVNPNTVFFHSL----REKMDYLVENKYYEADVLE-QYDFSFIESLSEQAYAKKFRFPTF 98

Query: 296 LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    Y  Y L   +G R  E  +   + VA+GLA  +   E+ A    + +    F  
Sbjct: 99  LGAFKYYTSYTLKTFDGERYLERFEDRVVMVALGLAQGD---EQLARNLVDEILDGRFQP 155

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA
Sbjct: 156 ATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREYGA 215

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 216 PIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADE 275

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   QN    LFSP +V   +     +  ++ E Y    D  
Sbjct: 276 KIRIKTLSLGVVIPDITFELAKQNEPMYLFSPYDVEREYGKPFADVNVS-EVYREMVDNP 334

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
            I   +KI A   ++ +  + FE+G+P+I F+D  N  +     G V  SNLC+EI    
Sbjct: 335 NISK-KKIQARDFFQNLAEIQFESGYPYIMFEDTVNRAN--PIAGKVTHSNLCSEILQVS 391

Query: 591 ----------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
                              CNLGS+N+         D    A +I TA+R L  V D + 
Sbjct: 392 TPSSMNVDLTYDEMGRDISCNLGSLNIA-----KAMDSPDFAQSIETAIRGLTAVSDTSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
             ++    + N    AIGLG M     L    + Y S E ++  +     +++HAI AS+
Sbjct: 447 IESVPTIAEGNRKSHAIGLGQMNLHGYLARERVFYGSEEGLDFTNMYFYSVTYHAIKASM 506

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNRTSRLPWDELK 750
           ++A+ER   +  F+ S +  G +    I  + E + E           +  ++  W +L+
Sbjct: 507 KIAKERGEKFYDFENSKYATGEYFDKYIDQVWEPKTEKVRGLFADSNAHLPTQEDWKQLR 566

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   GM N+   A+ PT +I+ I   + SI P    + ++                  
Sbjct: 567 DEVAEHGMYNAYLQAVPPTGSISYINHSTSSIHPIVSQIEIRK----------------- 609

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  I  + Y          + +D  + +  A+EI    +I++ ++  + +DQ 
Sbjct: 610 -------EGKIGRVYYPA------PYMTNDNLEYYEDAYEIGYEKIIDTYAQATQHVDQG 656

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 657 LSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 705


>gi|218778781|ref|YP_002430099.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760165|gb|ACL02631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfatibacillum alkenivorans AK-01]
          Length = 724

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/660 (26%), Positives = 288/660 (43%), Gaps = 77/660 (11%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343
            +F    L +L  RY     NG  IE P+    RVA  +A  + + ++       A +FY
Sbjct: 3   LSFSSSALVVLKKRYLKKDKNGRVIESPEKMLQRVADSVARADKDYDETADIQALAAQFY 62

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L+S   F+ ++PTL N+G R  QLS+CF+  V D +  IF +L+  AM+ K  GG G  
Sbjct: 63  DLMSKGWFIPNSPTLMNAGRRLGQLSACFVLPVEDSIESIFDSLKHTAMIHKSGGGTGFS 122

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ VR     +  T G S G I F+ V +     V QGG R+GA  A L   H D+EEF+
Sbjct: 123 FSRVRPANDKVLSTAGVSSGPISFMAVFDAATETVKQGGTRRGANMAILRVDHPDIEEFI 182

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    DD     + N +  +   FM+ + +   + L +P                   
Sbjct: 183 ACK----DDPAFLQNFNISVGLTQEFMEALEKGGDYELVNPRT----------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                         + ++A  ++  ++   +++G P I F D  N  +P   +G + ++N
Sbjct: 222 ----------RNSVKTLNAPKIFDMIVNSAWQSGEPGIIFLDRINEANPTPALGEIEATN 271

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L         CNLGSINL       + D D+L + I TAV  LDNV++IN + +
Sbjct: 272 PCGEQPLLPYES----CNLGSINLGKMAEGGKLDKDRLKAVIHTAVHFLDNVVEINKYPL 327

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ K+     R +GLG+MGF   L  L +PY S EAV +A E M  IS  +  AS +L +
Sbjct: 328 KEIKEQTLATRKVGLGVMGFADLLIKLGVPYDSEEAVAMAHEVMSLISEESKKASAQLGE 387

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG + ++ GS++D+   P                                   MRN+  
Sbjct: 388 ARGNFPAYAGSMYDKPETPH----------------------------------MRNATT 413

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             +APT TI+ I   S  I+P +   Y +  + G+       L  E+ +   +    ++ 
Sbjct: 414 TTLAPTGTISIIANASSGIEPIFAVAYTRRVLDGERLHEFHPLFEEMAKEQGFFTEDLAK 473

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSG 882
               +GSI  +  IP +++++  T+ +I P W +   +  QK+ D A S  + +    + 
Sbjct: 474 NIALEGSIQEMTNIPKEVRRLFKTSHDISPEWHVRIQAAFQKYTDNAVSKTVNFPHSATR 533

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + ++ +++ A   G K     R  S      S     +G      +        + G+  
Sbjct: 534 EDVEKVFKLARETGCKGVTIYRDGSRDHQVLSVASRSEGPRPTGELAPRARPIRTHGVTE 593


>gi|116670902|ref|YP_831835.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           sp. FB24]
 gi|116611011|gb|ABK03735.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter sp. FB24]
          Length = 727

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 175/715 (24%), Positives = 301/715 (42%), Gaps = 70/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  +       +  +   L +  M+F  +    +  Y++
Sbjct: 53  REAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETLDQYTMNF--IRELFNRAYKK 110

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E+ A++  + +
Sbjct: 111 KFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGD---EQLALQMVDEI 167

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T
Sbjct: 168 IEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALT 227

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 228 NIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 287

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   ++    LFSP +V  ++ +   +  +  + Y
Sbjct: 288 KRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYY 347

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D        KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 348 EMVDDSRI--KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNREN--PIDGKIIMSNLC 403

Query: 586 TEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                 + +   CNLGS+N+         D      TI TA+R L 
Sbjct: 404 SEILQVSQPTTYHDDLSYDQTGKDISCNLGSLNIA-----KTMDSPDFGLTIETAIRSLS 458

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ N  ++    + N    AIGLG M     L    + Y S E ++  +     + +
Sbjct: 459 AVSDMSNITSVPSIARGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVY 518

Query: 693 HAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLP 745
           HA+ AS +LA Q    +  F+ S +  G F           + E        ++  ++  
Sbjct: 519 HAVRASNKLAIQTGQTFGGFEKSKYASGEFFDKYTDQEWVPQTEKVAELFKNIHIPTQDD 578

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++             
Sbjct: 579 WRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK------------ 626

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  +  + Y          + +D  + +  A+EI    +I++ +   +
Sbjct: 627 ------------EGKLGRVYYPA------PYLTNDNLEYYQDAYEIGYEKVIDTYAAATQ 668

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 669 HVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQLA-LEGTEVEGC 722


>gi|229493417|ref|ZP_04387206.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
 gi|229319733|gb|EEN85565.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
          Length = 727

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 295/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +EE      + +       V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 73  DEKLDYLVEENYYEPEVLDQYSRT-FVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFD 131

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA      E  AVE  + + +  F  +TPT  NSG  +  + 
Sbjct: 132 GKRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEP 188

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +
Sbjct: 189 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIM 248

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 249 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 308

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  ++ + YE   D+       KI A   ++ 
Sbjct: 309 TFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDKRIR--KSKIKAREFFQT 366

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 367 VAELQFESGYPYIMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D    +++   ++ N+   A
Sbjct: 425 DISCNLGSLNIA-----KTMDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ER   +  F  S
Sbjct: 480 IGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539

Query: 715 LWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F         E        +  +  ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 540 KYASGEFFDKYTDQAWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRK------------------------EGKIGRVYY 635

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    ++++ +   + +DQ  SL L+  D  + + +
Sbjct: 636 PA------PYLTNDNLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRDI 689

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 690 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 722


>gi|220912865|ref|YP_002488174.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           chlorophenolicus A6]
 gi|219859743|gb|ACL40085.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 712

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/715 (24%), Positives = 299/715 (41%), Gaps = 70/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     ++     R   +     + +    +  Y++
Sbjct: 38  REAAHQYFLQHVNNNTVFFHDL-EEKLEYLVKNDYYERETLD-QYTMNFIRDLFNRAYKK 95

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R +E  +     VA+ LA      E+ A++  + +
Sbjct: 96  KFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARG---NEQLALQMVDEI 152

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T
Sbjct: 153 IDGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALT 212

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 213 NIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 272

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   ++    LFSP +V  ++ +   +  +  + Y
Sbjct: 273 KRENADEKIRIKTLSLGVVIPDITFELAKKDDDMYLFSPYDVEKVYGMPFSDVSVTEKYY 332

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D        KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 333 EMVDDSRI--KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRAN--PIDGKIIMSNLC 388

Query: 586 TEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                 + +   CNLGS+N+         D      TI TA+R L 
Sbjct: 389 SEILQVSQPTTYHDDLSYDDTGKDISCNLGSLNIA-----KTMDSPDFGLTIETAIRSLS 443

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ N  ++    K N    AIGLG M     L    + Y S E ++  +     + F
Sbjct: 444 AVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVF 503

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLP 745
           HA+ AS  LA E    +  F+ S +  G F         +    +VR+    ++  ++  
Sbjct: 504 HAVRASNLLAIETGQTFGGFEKSKYASGEFFDKYTEQEWVPQTEKVRELFKDVHIPTQAD 563

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++             
Sbjct: 564 WLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK------------ 611

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  +  + Y          + +D  + +  A+EI    +I++ +   +
Sbjct: 612 ------------EGKLGRVYYPA------PYLTNDNLEYYQDAYEIGYEKVIDTYAAATQ 653

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 654 HVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQLA-LEGTEVEGC 707


>gi|312140540|ref|YP_004007876.1| ribonucleoside-diphosphate reductase nrde [Rhodococcus equi 103S]
 gi|311889879|emb|CBH49196.1| ribonucleoside-diphosphate reductase NrdE [Rhodococcus equi 103S]
          Length = 701

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/717 (25%), Positives = 303/717 (42%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     + E    R + +     + V    D  Y +
Sbjct: 25  REAAKQYFLQHVNQNTVFFHNL-DEKLDYLVRENYYEREVLDQYSR-NFVKWLIDRAYAK 82

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E  A E  + +
Sbjct: 83  KFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAAGD---ETLATELVDEI 139

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+    T
Sbjct: 140 IAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLT 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 200 NVREHGAPIKKIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +  E Y
Sbjct: 260 KRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADINVT-EKY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               D   I+  + I A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 319 HEMVDDKRIRKSK-IKAREFFQTLAELQFESGYPYIMFEDTVNRAN--PIAGKITHSNLC 375

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              +   CNLGS+N+         D    A TI T++R L 
Sbjct: 376 SEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAL-----TMDSPDFAKTIETSIRALT 430

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D    +++   ++ N+   AIGLG M     L    I Y S E ++  +     + +
Sbjct: 431 AVSDQTHIYSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYSVVY 490

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSR 743
           HAI AS  +A+ERG  +  F  S +  G +       + E + E          ++  ++
Sbjct: 491 HAIRASNLIAKERGTHFKGFPESDYASGKYFDKYTDQVWEPKTEKVRQLFADAGIHIPTQ 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 551 DDWRELKASVQQYGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRK---------- 600

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  + +  A+EI    +I++ +  
Sbjct: 601 --------------EGKIGRVYYPA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAA 640

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 641 TQHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 696


>gi|293394771|ref|ZP_06639062.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
 gi|291422722|gb|EFE95960.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
          Length = 693

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/732 (24%), Positives = 309/732 (42%), Gaps = 84/732 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR              +        H ++    E     +EEG     +     
Sbjct: 14  DKDRLAARH---------YFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEPQVLA-QY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
           DF  +       Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  
Sbjct: 60  DFPFIKQLFKQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAAG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +    + A +    + S  F  +TPT  NSG  +  +L SCFL  + D++  I  A+   
Sbjct: 120 D---RQLAQDLVEEMISGRFQPATPTFLNSGKRQRGELVSCFLLRIEDNMESIGRAVNSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERV 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + +   +  ++ E Y    D   I+  R I+A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 297 YGMPFSDISVS-EKYREMVDDKRIRKSR-INARDFFQVLAEIQFESGYPYMMFEDTVNRE 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   + + +               CNLGS+N+         D 
Sbjct: 355 N--PIAGRINMSNLCSEILQVNRASKYHDDLGYAQVGKDISCNLGSLNIA-----KTMDA 407

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 + TA+R L  V +++   ++    + N   RAIGLG M     L    I Y SP
Sbjct: 408 ADFGKAVNTAIRALTAVAEMSDIRSVPSIAEGNRASRAIGLGQMNLHGYLARERIYYGSP 467

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------L 728
           E ++  +     +++HAI AS +LA ER  A+  F+ S +  G +    +          
Sbjct: 468 EGIDFTNIYFYTVAYHAIRASNQLAIERGNAFDGFEHSAYASGDYFAKYVDRQWQPQTER 527

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           + ++  E  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    
Sbjct: 528 VRQLFAEAGVEIPTQEQWLALRQSVMLHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSR 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++                         E  I  + Y          + +D    +  A
Sbjct: 588 IEIRK------------------------EGKIGRVYYPA------PYMTNDNLDYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              +E + ++G 
Sbjct: 678 MA-LEGTEVQGC 688


>gi|15842617|ref|NP_337654.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CDC1551]
 gi|148824242|ref|YP_001288996.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis F11]
 gi|253797851|ref|YP_003030852.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289553158|ref|ZP_06442368.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308374764|ref|ZP_07437295.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308379399|ref|ZP_07486134.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308406043|ref|ZP_07494896.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|61230675|sp|P0A5W8|RIR1_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|61230680|sp|P0A5W9|RIR1_MYCBO RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|13882932|gb|AAK47468.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|148722769|gb|ABR07394.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis F11]
 gi|253319354|gb|ACT23957.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437790|gb|EFD20283.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308340742|gb|EFP29593.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308357116|gb|EFP45967.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308364704|gb|EFP53555.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|323718283|gb|EGB27461.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CDC1551A]
 gi|328457628|gb|AEB03051.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 4207]
          Length = 725

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/744 (25%), Positives = 305/744 (40%), Gaps = 84/744 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRK 697

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY+R R    +E + ++G 
Sbjct: 698 GIKTLYYIRLRQMA-LEGTEVEGC 720


>gi|326804584|ref|YP_004327455.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
 gi|301795234|emb|CBW37952.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
          Length = 758

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 337/806 (41%), Gaps = 79/806 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  DG+ + F+ ++L  ++E AC GL+ VS   V + +     D +    ++  +I 
Sbjct: 2   INIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIIIQ 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ TLI  E PNY  V AR     LR+ V    YK P             + F + I++G
Sbjct: 62  AAATLISVEKPNYQYVAARLKSYDLRKVVYGR-YKPPHLL----------DIFAKNIKQG 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI----NGSRIEMPQA 319
           V  R   E     +   L   + ++RD  F +  +  L  +Y L      +    E PQ 
Sbjct: 111 VYDREFLELYTKEEFEELNTVINHKRDKNFTWAAMGQLTQKYLLRDRSADSKVYYETPQV 170

Query: 320 FFMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M +AM L  A  +  +     +FY   S+  F   TP +    T   Q SSC L    
Sbjct: 171 MYMAIAMALFSAWDKETRLTMVKKFYEYASTGKFSLPTPIMSGVRTPTRQFSSCVLIKTG 230

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I    +          G+G D   +RG+G+ I        G++PF+K       +
Sbjct: 231 DTLDSINATAKSIVDYVSKRAGIGFDVGAIRGIGSPIRKGEMVHTGLVPFIKYLTGALKS 290

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R G+   Y+  WH   ++ + L+ N G +  R   ++    I  +  +R+    
Sbjct: 291 CSQGGIRGGSATCYIPIWHYQFDDVVVLKNNRGLEENRERRIDYGIQINRVMFERLVNKQ 350

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLFE 555
              LF P +  D+++ +  + +     Y+      +  +   +K++A  +++ +L    +
Sbjct: 351 PLYLFDPKDNRDMYEAFFADVDKFRTLYDNMVKAADAGLVRAKKMNAEEVFQMLLDQRSD 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------SSEETAVCNLGSINL 607
           TG  +I F D  N  SP  ++  ++SSNLC EI L +             A+C L S NL
Sbjct: 411 TGRIYIAFVDHMNQYSPF-NLDTIYSSNLCLEIALPTREFQQYDDEEGRIALCTLASFNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       D  ++       V  LD +++   +   +A+ +   +R +G+G++      
Sbjct: 470 TAFE-----DPTEMEDVAYVLVSALDMLLEYQDYPARQARLAVEEYRPLGIGVVNVAHFF 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y SP  +E+ D+ M  + F+ + AS  LA + GA    K ++   G    D   
Sbjct: 525 AKNFTGYGSPVGLELLDKWMAHLHFYLVKASNRLAMKFGACK--KETIHRSGKITADLQP 582

Query: 728 LLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           L  ++    +        L WD LK  ++  G+RN+  +AIAPT + + +   +  I+P 
Sbjct: 583 LPLDILPNGKKPEGMAYGLDWDGLKDSLRCHGIRNATLLAIAPTESSSQVLNATNGIEPP 642

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + +K +  G +  +   +                                + L  ++
Sbjct: 643 KGLISIKGSKDGVYKQIVPDV--------------------------------ETLGPLY 670

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQ----AWLMGLK 898
              + +  +  +++A+  Q+W+DQ+ S+N + D    P GK    +  Q     ++ G K
Sbjct: 671 DLKWNLSCIDYLKTAAVAQRWVDQSISVNTHYDPEKFPDGKIPRSLMMQDILSFYMWGGK 730

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLN 924
           T YY  ++   S E   LK V+   +
Sbjct: 731 TLYYNTNKD--SKEDEELKQVEEICD 754



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR---SIRVQDIIKNLTEQTVTRLLQ 85
          + +IKR+G    FD  K+   + +A   +EG   S    + ++Q      TE+    ++Q
Sbjct: 2  INIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIIIQ 61

Query: 86 HNKSALIVHIE 96
             +A ++ +E
Sbjct: 62 --AAATLISVE 70


>gi|326391806|ref|ZP_08213324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992164|gb|EGD50638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 770

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/634 (28%), Positives = 287/634 (45%), Gaps = 84/634 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   +K A        FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 222 ------------VVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL       +     DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPYES----CNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E M FI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMGFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +                                     I +R
Sbjct: 386 KLAEQRGTFGFYDKSIYKK-----------------------------------MGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI+ I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 411 NATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + + 
Sbjct: 471 ELMREI-ARRGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +E + + +   Y  A+ +G K     R  S  S 
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQ 563


>gi|291326471|ref|ZP_06124645.2| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291314338|gb|EFE54791.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 710

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 185/751 (24%), Positives = 318/751 (42%), Gaps = 80/751 (10%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           SD++   + +   L + E        R   +K  +E     +++           L  E 
Sbjct: 8   SDVDYHALNAMLNLYDNE-------GRIQFDK-DKEAAHHYFRQHVNQNTVFFHDL-KEK 58

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313
               ++E      + E   DF+ +       Y   F F  +LG    Y  Y L   +G R
Sbjct: 59  LDFLVQENYYENSVLE-QYDFEFIKALFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKR 117

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
             E  +     VA+ LA      E  A  + + + +  F  +TPT  N G  +  +L SC
Sbjct: 118 YLERYEDRVCMVALTLAQG---SESLAKLYVDEIITGRFQPATPTFLNCGKKQRGELISC 174

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+ 
Sbjct: 175 FLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKML 234

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 235 EDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP ++  ++ +   E  +  + Y    +   IK ++ I+A   ++ +  
Sbjct: 295 LAKDNQDMYLFSPYDIERIYGVPMSEISVT-DKYHEMVNNKAIKKYK-INAREFFQTLAE 352

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAV 599
           + FE+G+P+I F+D  N  +     G ++ SNLC+EI   +               +   
Sbjct: 353 IQFESGYPYILFEDTANRAN--PIAGRINMSNLCSEILQVNRPSVYEDDLSYQQIGKDIS 410

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A +I  AVR L  V D++   ++    + N    AIGL
Sbjct: 411 CNLGSMNIA-----KTMDSPDFAQSIAAAVRALSAVSDMSDIRSVPSIAEGNRQSHAIGL 465

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L   HI Y S EA++  +     ++++A+  S +LA ER   +  F+ S + 
Sbjct: 466 GQMNLHGYLAREHIYYGSEEALDFTNIYFYAVTYYALKTSNQLAIERKTAFVGFEHSTYA 525

Query: 718 QGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    I  +         E+     +   +R  W  LK+ V T G+ N N  AI PT
Sbjct: 526 SGDYFDKYINNIWLPKTQTVQELFRRSGIEIPTREDWQALKQSVITYGIYNQNLQAIPPT 585

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         E  I  + Y   
Sbjct: 586 GSISYINNSTSSIHPIVSRIEIRK------------------------EGKIGRVYYPA- 620

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                  + ++  + +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++  
Sbjct: 621 -----PFMTNENLEYYQDAYQIGPEKIIDTYAMATQHVDQGLSLTLFFKDDATTRDINRA 675

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              AW  G+KT YY+R R  T++E + ++G 
Sbjct: 676 QIYAWRKGIKTLYYIRLRQ-TALEGTEVEGC 705


>gi|167769961|ref|ZP_02442014.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
 gi|167667795|gb|EDS11925.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
          Length = 761

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 178/662 (26%), Positives = 295/662 (44%), Gaps = 87/662 (13%)

Query: 296 LGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNLLSS 348
             L +L  RY      G  IE  +  F RVA  +         +T+    +  FY ++++
Sbjct: 12  NALTVLERRYLKKDEHGENIETVEQMFRRVADAIASADAAYSGKTDVAALSNRFYEMMTN 71

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  ++ +R
Sbjct: 72  LEFLPNSPTLMNAGKELGQLSACFVLPVGDSMEEIFEAIKQAALIHKSGGGTGFSFSRLR 131

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T G + G + F++V N    AV QGG R+GA    L   H D+ EF+D +KN
Sbjct: 132 AAGATVRSTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRIDHPDILEFIDCKKN 191

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      + N +  I + FM+ V Q   + L  P                        
Sbjct: 192 NAD----ITNFNISVGITEEFMQAVQQGNAYELVDPKT---------------------- 225

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +   ++ A  ++ K++   +  G P I F D  N  +     G + S+N C E 
Sbjct: 226 -----KQAVGQLDAREVFDKIVESAWRNGEPGIIFLDRLNRDNVVPSQGEIESTNPCGEQ 280

Query: 589 TLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            L         CNLGSINL+            DYDKL  T+R AV  LDNVID+N + + 
Sbjct: 281 PLLPYES----CNLGSINLVNMLKCENGAYAVDYDKLGRTVRDAVHFLDNVIDVNKYPLA 336

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +   +    R IGLG+MG+   L  L +PY S EAV +A   MEFI+    + S ELA+ 
Sbjct: 337 EIDVTTKQTRKIGLGVMGWSDMLAYLGVPYNSDEAVALARRVMEFITKTGRAESAELAKV 396

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+  F+ S++  G                                      +RN+   
Sbjct: 397 RGAFPLFEKSIYAGGT------------------------------------PLRNATVT 420

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT T++ I G S  ++P +  +++++ M G +   VN  L   L+ R L+ + ++  
Sbjct: 421 TIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTEMIEVNPVLKEILEARGLYSDGLMKK 480

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSG 882
           +   +GS+ +IE IP D++++   + ++ P++  +  +  Q++ D A S  + +  + + 
Sbjct: 481 IAA-EGSLQHIEEIPADIRRVFVCSHDVSPLYHTKMQAAFQQFTDNAVSKTVNFKHDATI 539

Query: 883 KKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + +  +Y  ++ +G K  T Y   SR +  +   ++K   G                   
Sbjct: 540 EDVREVYMLSYELGCKGVTIYRDGSRDSQVLNIGSVKKEGGAPAKAEQPAGFGQIKPRPR 599

Query: 941 PS 942
           P 
Sbjct: 600 PE 601


>gi|317506845|ref|ZP_07964617.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254773|gb|EFV14071.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 728

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/746 (23%), Positives = 306/746 (41%), Gaps = 86/746 (11%)

Query: 212 KEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +  +Y  + A   +  L            RE     + +           L  E     +
Sbjct: 26  EHLDYHALNA---MLNLYGPNGEIQFEKDREAANQYFLQHVNQNTVFFHNL-SEKLDYLV 81

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMP 317
           E       +       + V    D  Y + F F  +LG    Y  Y L   +G R  E  
Sbjct: 82  ENEYYEPEVLGRYSR-EFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERF 140

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV 376
           +   + VA+ LA  +   E+ A +    +    F  +TPT  N G  +  +  SCFL  +
Sbjct: 141 EDRVVMVALALADGD---EELASQLVEEIIEGRFQPATPTFLNCGKKQRGEPVSCFLLRI 197

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+  
Sbjct: 198 EDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFS 257

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N
Sbjct: 258 YANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRN 317

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               LFSP +V  ++ +   E  +  + +E      E    +KI+A   ++ +  + FE+
Sbjct: 318 DDMYLFSPYDVERVYGVPFAEVSVTEKYFEMV--DDERIRKKKINAREFFQTIAELQFES 375

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGS 604
           G+P+I ++D  N  +     G +  SNLC+EI               S   +   CNLGS
Sbjct: 376 GYPYIMYEDTVNRAN--PIDGRITHSNLCSEILQVSTASTFNADLSYSHIGKDISCNLGS 433

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+         D      T+ T++R L +V D     ++    + N    AIGLG M  
Sbjct: 434 LNIA-----KTMDSPDFGRTVETSIRALTSVSDQTRIDSVPSIAEGNEQSHAIGLGQMNL 488

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y S E ++  +     + +HA+SAS ++A ER  A++ F+ S +  G F 
Sbjct: 489 HGYLARERIHYGSEEGIDFTNIYFYTVLYHALSASNKIAIERGRAFTGFERSKYASGEFF 548

Query: 723 IDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +          + E+ +   +   +   W  LK+ V+  G+ N N  A+ PT +I+ 
Sbjct: 549 EKYLTQSWEPKTERVRELFERAGVAIPTVADWQRLKESVQAHGIYNQNLQAVPPTGSISY 608

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   + SI P    + ++                         E  I  + Y        
Sbjct: 609 INHSTSSIHPVAAKIEIRK------------------------EGKIGRVYYPA------ 638

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW
Sbjct: 639 PYLANDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAW 698

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGV 919
             G+KT YY+R R    +E + ++G 
Sbjct: 699 RKGIKTLYYIRLRQLA-LEGTEVEGC 723


>gi|108798785|ref|YP_638982.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. MCS]
 gi|119867903|ref|YP_937855.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. KMS]
 gi|126434386|ref|YP_001070077.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. JLS]
 gi|108769204|gb|ABG07926.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. MCS]
 gi|119693992|gb|ABL91065.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. KMS]
 gi|126234186|gb|ABN97586.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 178/694 (25%), Positives = 294/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I++    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIQKDYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---TLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKKNEDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDSRIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+  E            
Sbjct: 333 LAELQFESGYPYIMYEDTVNRSN--PIEGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F         E + E          +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTEQPWEPKTERVRQLFADAGIRIPNQDDWRRLKESVQQHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPVASKIEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|282599613|ref|ZP_06257324.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282568716|gb|EFB74251.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 710

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 182/743 (24%), Positives = 311/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEK------LRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +Y  + A   L        L ++          +        H+++    E     + E 
Sbjct: 11  DYHSLNAMLNLYDSEGRLQLDKDKQAAHAYFRQHVNQNTVFFHDLK----EKLDFLVNEN 66

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAF 320
                + E   +F  +       Y   F F  +LG    Y  Y L   +G R  E  +  
Sbjct: 67  YYESEVLE-QYEFQFIKQLFKQAYAHKFRFKTFLGAFKYYTSYTLKTFDGQRYLERYEDR 125

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD 379
              VA+ LA      +  A    + + S  F  +TPT  N G  +  +L SCFL  + D+
Sbjct: 126 VCMVALTLAQG---SKSLASLLVDEIISGRFQPATPTFLNCGKKQRGELISCFLLRIEDN 182

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D     N
Sbjct: 183 MESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKHIENQSSGVVPVMKMLEDAFSYAN 242

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N   
Sbjct: 243 QLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNEDM 302

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   + +   E  ++ E Y    +   IK F+ I+A   ++ +  + FE+G+P
Sbjct: 303 YLFSPYDVQREYGVAMSEISVS-EKYHEMVNNKAIKKFK-INAREFFQTIAEIQFESGYP 360

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINL 607
           +I F+D  N  +     G ++ SNLC+EI   +               +   CNLGS+N+
Sbjct: 361 YILFEDTANREN--PIAGRINMSNLCSEILQVNQPSTYEDDLNYKTVGKDISCNLGSMNI 418

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +       D    A +I TAVR L  V D++  +++    + N    AIGLG M     
Sbjct: 419 AS-----TMDSPDFALSIETAVRALTAVSDMSYINSVPSIAQGNQQSHAIGLGQMNLHGY 473

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDS 725
           L   HI Y S + ++  +     ++++A+  S +LA E +  +  F  S +  G +    
Sbjct: 474 LAREHIYYGSEQGLDFTNIYFYTVAYYALKTSNQLAIERQQTFDGFSASKYASGEYFDKY 533

Query: 726 IGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           I  +         E+     +   ++  W  LK+ V T G+ N N  AI PT +I+ I  
Sbjct: 534 INKIWSPKTQTVQELFRRSGIKIPTQADWLALKQSVMTYGIYNQNLQAIPPTGSISYINN 593

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P    + ++                         E  I  + Y          +
Sbjct: 594 STSSIHPVVAPIEIRK------------------------EGKIGRVYYPA------PFM 623

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
            ++  K +  A++I P  +I++ +   + +DQ  SL L+ D + + + ++     AW  G
Sbjct: 624 TNENLKFYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGDATTRDINRAQIYAWRKG 683

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R  T++E + ++G 
Sbjct: 684 IKTLYYIRLRQ-TALEGTEVEGC 705


>gi|161347547|ref|YP_462506.2| ribonucleotide-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
          Length = 743

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 166/642 (25%), Positives = 290/642 (45%), Gaps = 79/642 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
           +     +++L  RY     +G+ +E P   F RVA  +A  +       +    + +FY 
Sbjct: 12  SLTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVADTIAAADRIFNDQADTAGLSDQFYR 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  +
Sbjct: 72  MMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKSGGGTGFSF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G I F++V +     + QGG R+GA    L   H D+  F+ 
Sbjct: 132 SRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMNFIM 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D+ + ++ N +  + ++FM  V  +  + L +P +                  
Sbjct: 192 CKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRDG----------------- 230

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +V   ++A  ++ +++   +E G P I F D  N  +P  H+GV+ S+N 
Sbjct: 231 ----------QVIGTLNARKVFDRIVAQAWENGEPGIVFLDRLNRDNPTPHIGVIESTNP 280

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     N + ++ +L   +  AV  LDNV++IN + + 
Sbjct: 281 CGEQPLLPYES----CNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVVEINQYPLP 336

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              +    +R IGLG+MG+   L  L IPY S  A+E+A+E M+FI+     AS  LA++
Sbjct: 337 IIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHDASHALAKK 396

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG + +FK SL+D+                                       +RN+   
Sbjct: 397 RGPFPNFKESLYDKQG----------------------------------KAPIRNATVT 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   Y++  M  D    +N F     K+R  + + ++  
Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERGFYSKELMRK 482

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +    G+I +++ +P D++ +  TA +I P   I   +  QK+ D A S  +      + 
Sbjct: 483 I-AERGTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVSKTVNFAHTATI 541

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
             +  ++R A+ +  K     R  S  +   ST K  +  + 
Sbjct: 542 DDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKEREQPVQ 583


>gi|294993445|ref|ZP_06799136.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 210]
          Length = 693

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 292/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|317472118|ref|ZP_07931450.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900522|gb|EFV22504.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 676

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/681 (29%), Positives = 336/681 (49%), Gaps = 65/681 (9%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM-YDGLSESDLETALIFSS 206
           +++      F    L   ++     LQ+  S  +L+E +++   +G+ + +    L+ ++
Sbjct: 24  ILESFRTEKFPIGDLLKSIQN--EFLQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 81

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR  + +    V   + +   +  + ++  L         ++ + 
Sbjct: 82  AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVFLS--------QQNLY 133

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRV 324
              + ++  + ++   ++ ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +
Sbjct: 134 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 193

Query: 325 AMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM LA+KETE        FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 194 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 253

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G 
Sbjct: 254 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 313

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PD F ++   N    W L
Sbjct: 314 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGNWYL 373

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG E+   Y +        E    R I    + R ++    ET
Sbjct: 374 MCPHEILTVKGYALEDCYGTEWTEKYLDCVLD----ERISKRVIPIKDIVRMIIKSAAET 429

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N S                       
Sbjct: 430 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQTEQKIEMIGGEEVVVTVTK 489

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         DY++L+    +AVR LDNVID+N   +  A+ ++  +
Sbjct: 490 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 546

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+ G+   L    I + S E ++ A++    I + A++AS ++++E+G+Y  F G
Sbjct: 547 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 606

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +                    ++  W  L+ RVK  G+RN   +A APT++ +
Sbjct: 607 SDWQTGDYFRK--------------RDLTKGRWKALEDRVKKHGLRNGYLLAAAPTSSTS 652

Query: 774 NICGVSQSIDPSYQNLYVKSN 794
            I G +  +DP     +++  
Sbjct: 653 IITGTTAGLDPVMNRYFLEEK 673


>gi|15610188|ref|NP_217567.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Rv]
 gi|31794229|ref|NP_856722.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis AF2122/97]
 gi|121638935|ref|YP_979159.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662904|ref|YP_001284427.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|167969653|ref|ZP_02551930.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|215412906|ref|ZP_03421610.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 94_M4241A]
 gi|218754816|ref|ZP_03533612.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis GM 1503]
 gi|224991427|ref|YP_002646116.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254552126|ref|ZP_05142573.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188083|ref|ZP_05765557.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CPHL_A]
 gi|289448729|ref|ZP_06438473.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289763229|ref|ZP_06522607.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|297635682|ref|ZP_06953462.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732680|ref|ZP_06961798.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN R506]
 gi|298526521|ref|ZP_07013930.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777357|ref|ZP_07415694.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|306781261|ref|ZP_07419598.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|306785902|ref|ZP_07424224.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|306790256|ref|ZP_07428578.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|306794751|ref|ZP_07433053.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|306804836|ref|ZP_07441504.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|306809029|ref|ZP_07445697.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|306969129|ref|ZP_07481790.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|307081184|ref|ZP_07490354.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
 gi|313660012|ref|ZP_07816892.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN V2475]
 gi|3261509|emb|CAA16136.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|31619824|emb|CAD96764.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|121494583|emb|CAL73064.1| Probable ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507056|gb|ABQ74865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|224774542|dbj|BAH27348.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289421687|gb|EFD18888.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289710735|gb|EFD74751.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|298496315|gb|EFI31609.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214249|gb|EFO73648.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|308325904|gb|EFP14755.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|308329426|gb|EFP18277.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|308333271|gb|EFP22122.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|308336926|gb|EFP25777.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|308344609|gb|EFP33460.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|308348557|gb|EFP37408.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|308353283|gb|EFP42134.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|308361068|gb|EFP49919.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
          Length = 693

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 292/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|253990648|ref|YP_003042004.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782098|emb|CAQ85262.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid
           reductase r1 subunit) [Photorhabdus asymbiotica]
          Length = 709

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/751 (23%), Positives = 308/751 (41%), Gaps = 80/751 (10%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
              +   + +   L + E N      +  +           +        H+++    E 
Sbjct: 7   KQRDYHALNAMLNLYDSEGNIQFDKDKLAIYH-----YFHQHVNQNTIFFHDLK----EK 57

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312
                +EG     + E   DF  +       Y + F F  +LG    Y  Y L    N  
Sbjct: 58  LDFLQQEGYYETKVLE-QYDFAFIKKLFQQAYSKKFRFQTFLGAFKYYTSYSLKTFDNKR 116

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSC 371
            +E  +     VA+ LA      +  A    + + S  F  +TPT  N G  +  +L SC
Sbjct: 117 YLERYEDRVCMVALTLAQG---NQTLACRLVDEIISGRFQPATPTFLNCGRKQRGELVSC 173

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GV+P +K+ 
Sbjct: 174 FLLRIEDNMESIGRSINSALQLSKRGGGVACLLSNLREAGAPIKMIENQSSGVVPVMKML 233

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 234 EDAFSYANQLGARQGAGAVYLNAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFE 293

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               N    LFSP ++  ++ +   E  I  E Y       +     KI+A   +  +  
Sbjct: 294 LAKNNEDMYLFSPYDIQRVYGVPMSEISIT-EKYAEMV-NNQHIRKSKINAREFFLTLAE 351

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------V 599
           + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E A             
Sbjct: 352 IQFESGYPYIMYEDTVNRVN--PIKGRINMSNLCSEILQVNSASEYADDLSYRYIGKDIS 409

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A +I TA+R L  V D++   ++   +K N    AIGL
Sbjct: 410 CNLGSMNIAH-----TMDSPNFALSIETAIRALTAVSDMSHIRSVPSIEKGNQDSHAIGL 464

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWD 717
           G M     L    I Y S E ++  +     +++HA+  S ++A E    +  FK S + 
Sbjct: 465 GQMNLHGYLARERIYYGSEEGIDFTNIYFYIVAYHALRTSNQIAIERNCYFKGFKDSRYA 524

Query: 718 QGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F         +        + ++  +   ++  W ELK  V T G+ N N  A+ PT
Sbjct: 525 SGEFFNKYTERSWQPQTQKVCQLFEQAGIVIPNQQDWLELKASVITHGIYNQNLQAVPPT 584

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         +  +  + Y   
Sbjct: 585 GSISYINNSTSSIHPIVSRIEIRK------------------------DGKLGRVYYPA- 619

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                  + +D  + +  A+EI P  +I++ +   + +DQ  SL L+  D+ + + ++  
Sbjct: 620 -----PFMTNDNLEYYKDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDDATTRDINKA 674

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              AW  G+KT YY+R R    +E + ++G 
Sbjct: 675 QIYAWRKGIKTLYYIRLRQIA-LEGTEVQGC 704


>gi|293193539|ref|ZP_06609809.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
 gi|292819895|gb|EFF78897.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
          Length = 718

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/743 (25%), Positives = 309/743 (41%), Gaps = 78/743 (10%)

Query: 211 EKEPNYAKVTARFLLEKLR-------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             E +Y  + A+  L                  Y       +        E     ++EG
Sbjct: 15  SPELDYHALNAQLNLYDANGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKLKYLVDEG 74

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAF 320
              + + +     D+  L     Y   F F  +LG    Y  Y L   +G R  E  +  
Sbjct: 75  YYEKHVLDQYDFADIKELYKQ-AYAHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDR 133

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
              V++ LA  + E    A  F + + +  F  +TPT  N+G     +L SCFL  + D+
Sbjct: 134 VAMVSLYLARGDIE---LARSFVDEIMTGRFQPATPTFLNAGKAARGELVSCFLLRIEDN 190

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+    N
Sbjct: 191 MESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSFSYAN 250

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+  +   +N   
Sbjct: 251 QLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITFELARKNEDM 310

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  ++ +   E  +  E Y    D G I   RKI+A   ++ +  + FE+G+P
Sbjct: 311 YLFSPYDVERVYGVPFSEISVT-EKYHEMVDDGRIHK-RKINARRFFQTIAEIQFESGYP 368

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINL 607
           +I F+D  N  +     G +  SNLC+EI                   +   CNLGS+N+
Sbjct: 369 YIVFEDTVNKAN--PIKGRITMSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLGSLNI 426

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    D    + TI  A+R L  V D++   ++    + N    AIGLG M     
Sbjct: 427 A-----KTMDSPDFSKTIEMAIRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHGY 481

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           L   H+ Y S EA++  +     + F AI AS ++A+ER   +  F+ S +  G F    
Sbjct: 482 LAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRKY 541

Query: 726 I-----GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           I         + R+ LA   +   ++  W+ L   V   GM N N  A+ PT +I+ I  
Sbjct: 542 IDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYINN 601

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P    + ++                         E  I  + Y          +
Sbjct: 602 STSSIHPIVSRVEIRK------------------------EGKIGRVYYPA------PYM 631

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
            ++  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + L+  Y  AW  G
Sbjct: 632 SNENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYAWKKG 691

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 692 IKTLYYMRLRQMA-LEGTEVEGC 713


>gi|323650973|ref|YP_004243616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
 gi|323461613|dbj|BAJ77029.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
          Length = 789

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/811 (26%), Positives = 363/811 (44%), Gaps = 107/811 (13%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-------MYDGLSESDLETALIFS 205
             + F+ +RL   ++    G +++       E+Y +         + +   D+   LI +
Sbjct: 14  RRMEFDRERLISFIKR---GFENIEVNPTTKESYISKVVRTIERREEIESKDITKILIQN 70

Query: 206 SRTLIEK--------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +  L                   N+ +      L++L +           K   ++ +  
Sbjct: 71  ALVLTNDIKNDSGYVSPDYLVNTNWNRFARYVKLQELYKRA--------SKNRSYDSKEK 122

Query: 252 YPEYFCRYI---EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           Y +++   +   E+G+    +  +    +LV   N +  ERD  F++ GL  L  RY + 
Sbjct: 123 YGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPERDELFDFAGLHSLSGRYCVK 182

Query: 309 INGS-RIEMPQAFFMRVAMGLAL-KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
                  E+PQ  FM  A+ L + +E ++ ++A+E Y  LS+ +   +TPTL N+G    
Sbjct: 183 DFDKSVYELPQERFMIAALHLMMPEEKDRVEKAIELYWALSNLYLTLATPTLMNAGRVTG 242

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            LSSCF+ T  D L GIF    + +  +K   G+G  +  +R  G+ I G  G + G++ 
Sbjct: 243 GLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFGKLRATGSDIRGHKGAASGILG 302

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DLR NTGD  +R +++ T   IP
Sbjct: 303 WIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDLRLNTGDKSKRAYNVFTGLCIP 362

Query: 487 DLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGK----------EFEIAYENYERQADR 531
           D FM++V +   + LF P E+       L D Y K            + A+  +      
Sbjct: 363 DEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLGEKETPNPIDHAWTYHYYLCVD 422

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                 R++ A+ L ++ +    ETG P++ ++D  N  +P  H G+++SSNLC+EI  N
Sbjct: 423 NNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRNNPNSHSGMIYSSNLCSEIAQN 482

Query: 592 SSSE----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            S                     + +L + NL +   N           I+  +R LDNV
Sbjct: 483 MSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNRTEKDGVTERVIKIQMRALDNV 542

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I +    + +A+ +N  +RA+G G  G  + L    I + S +A+E   +  E I  + I
Sbjct: 543 ISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMWDSEQAIEYISKLEEKIMLNCI 602

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS  L +E+G+Y  F+GS W  G           E  +E  +N      W E+K+    
Sbjct: 603 KASALLGKEKGSYPVFEGSKWQTG-----------EWFEERDLNSPE---WLEVKELASK 648

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             MRN    AIAPT   + I G +  IDP +  +Y +             LV EL Q+  
Sbjct: 649 Y-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFERKKDFHL----PILVPELNQKTW 703

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +       ++Y +                     ++  +W I+  + RQK++DQA S N 
Sbjct: 704 FFYKPTMKMEYENEK-------------------QLAHLWAIKHNAARQKFVDQAISHNF 744

Query: 876 YLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
           Y+ +    K    ++ + W  G+KT+YY RS
Sbjct: 745 YIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 775


>gi|227112967|ref|ZP_03826623.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 693

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/724 (25%), Positives = 306/724 (42%), Gaps = 75/724 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     +EEG     + +    FD +   
Sbjct: 13  FEMDKLAARRYFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEADVLD-QYSFDFIKSL 67

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +T     A
Sbjct: 68  FQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKRYLERYEDRVCLVALTLAKGDT---ALA 124

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  G
Sbjct: 125 SALVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGG 184

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D
Sbjct: 185 GVAFMLSNIRETGAPIKRIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPD 244

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E 
Sbjct: 245 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNQVMYLFSPYDVEQVYGVPLSEI 304

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  E Y    +   I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G 
Sbjct: 305 SVT-EKYHEMVNDKRIRKSQ-IKAREFFQILAEIQFESGYPYMMFEDTVNRAN--PIHGR 360

Query: 579 VHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI               S   +   CNLGS+N+     +  F       T+ 
Sbjct: 361 INMSNLCSEILQVNEASLYDDDLGYSHIGKDISCNLGSMNIANAMTSPDF-----GQTVE 415

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L  V D++   ++   +K N    AIGLG M     L    I Y + EAV+  + 
Sbjct: 416 MAIRALTAVSDMSHISSVPSIEKGNDQSHAIGLGQMNLHGYLAKERIFYGTEEAVDFTNI 475

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDEL 736
               ++FHAI AS  LA ER   +S F+ S +  G +    I    E        + ++ 
Sbjct: 476 YFYTVAFHAIRASNALAIERNQRFSGFELSKYATGEYFDKYIEQTWEPTTTRARELFEQA 535

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 536 GIHIPTQQDWAALRESVIAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSRIEIRK--- 592

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D  + +  A+EI P  +
Sbjct: 593 ---------------------EGKIGRVYYPA------PYMSNDNLEYYQDAYEIGPQKI 625

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + 
Sbjct: 626 IDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWTKGIKTIYYIRIRQMA-LEGTE 684

Query: 916 LKGV 919
           ++G 
Sbjct: 685 VQGC 688


>gi|91200074|emb|CAJ73117.1| similar to ribonucleoside-diphosphate reductase 1 alpha chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 589

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 286/635 (45%), Gaps = 83/635 (13%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNL 345
                   L  RY    + G  IE P+  F RVA  +A  +    K+A       EFY+L
Sbjct: 8   LSPNAKLTLEKRYLKRNVLGKIIESPEDMFRRVAKNIASVDLIYNKKADIVSMEEEFYHL 67

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S  F+ ++P L N+G    QL +CF+  V D + GIF  +++ A++ K  GG G  ++
Sbjct: 68  MTSLQFLPNSPALMNAGRHLQQLLACFVLPVEDSIEGIFDTVKQAALIHKSGGGTGFSFS 127

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  + G + G + F+KV N+   A+NQGG R+GA  A L   H D+ +F+  
Sbjct: 128 RIRPKNDIVSASCGMASGPVSFMKVFNEATEAINQGGFRRGANMAALNVNHPDIFDFIHA 187

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +   G       + N +  I + FM+ V  +A + L +P                     
Sbjct: 188 KNTEGV----LTNFNISVGITNAFMEAVENDAPFPLINPRT------------------- 224

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V + I A  L+++++   ++ G P + F D  N  +P   +G +  +N C
Sbjct: 225 --------KLVVKTIRAKVLFQEIVQSAWKNGEPGVLFIDAINAANPTPLLGSIEGTNPC 276

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641
            E  L         C LGS+N+           + ++  L  TI  AV  LDNVID   H
Sbjct: 277 GEQPLLPYE----ACVLGSVNVSQMTTYKNDHYEMNWHTLEKTIHLAVHFLDNVIDATKH 332

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + +     +R IGLG+MGF   L  L+I Y S EA+   D+ + F S  A  AS  L
Sbjct: 333 PLPQIEVLTKGNRKIGLGIMGFADLLIKLNISYNSEEAMRFTDKLLRFFSGKANEASERL 392

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A ERG + +++ S++ Q                                +       RN+
Sbjct: 393 ASERGMFPNYEKSIYAQ--------------------------------QNGPKY--RNA 418

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI+ I   S  I+P +   Y ++  + G    ++ F  N  K+R L+ + +
Sbjct: 419 TRTTIAPTGTISIIANCSSGIEPLFAIAYTRNVLVEGGLPEIHPFFENVAKKRGLYTDKL 478

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           ++++K  +GSI NI  IP D+K+I  TA +I P + ++  S  QK+ID A S  +    E
Sbjct: 479 LAEVK-REGSIQNIAYIPYDIKRIFTTARDISPEYHVKIQSICQKYIDNAVSKTINFPKE 537

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + + ++ ++  A+  G K     R +S  S   S
Sbjct: 538 STAEDVEKVFLLAYRSGCKGITIYRDKSRMSQALS 572


>gi|283457962|ref|YP_003362568.1| ribonucleotide reductase subunit alpha [Rothia mucilaginosa DY-18]
 gi|283133983|dbj|BAI64748.1| ribonucleotide reductase, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 726

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/761 (24%), Positives = 316/761 (41%), Gaps = 83/761 (10%)

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ++    + G+S  +L   L      L ++         R    +         +      
Sbjct: 19  KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQ-----YFLQHVNNNTV 68

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILY 302
             H+++    E     IE       L     +F  +       Y   F F  +LG    Y
Sbjct: 69  FFHDLE----EKIEYLIENQYYEPEL-FDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFY 123

Query: 303 DRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             Y L   +G R  E  +     VA+ LA      EK A +  + + S  F  +TPT  N
Sbjct: 124 TSYALKTFDGQRYLERFEDRVCMVALLLAEG---NEKLAEDIVDEIISGRFQPATPTFLN 180

Query: 361 SGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G  +  +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     
Sbjct: 181 AGKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 240

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   +
Sbjct: 241 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTL 300

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    IPD+  +   +N    LFSP +V  ++ +   +  ++ + YE   D        K
Sbjct: 301 SLGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARI--TKSK 358

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---- 595
           I+A   ++ +  + FE+G+P++ F+D  N  +     G V  SNLC+EI   S       
Sbjct: 359 INAREFFQTIAEIQFESGYPYVMFEDTVNRAN--PIAGKVIMSNLCSEILQVSEPSTYHA 416

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKA 646
                   +   CNLGS+N+         D D    T+ TA+R L +V D +   ++   
Sbjct: 417 DLGYETVGKDISCNLGSLNIAL-----TMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSI 471

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           ++ N+   A+GLG M     L   H+ Y S EA++  +     +++HAI  S+++A+ER 
Sbjct: 472 ERGNNMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRTSMQIAKERG 531

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMR 759
             +  F+ S +  G F    I      + E         +  +R  W +L   V   GM 
Sbjct: 532 QRFEGFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMY 591

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N N  A+ PT +I+ I G + SI P    + ++                         E 
Sbjct: 592 NQNLQAVPPTGSISYINGSTSSIHPIAAKIEIRK------------------------EG 627

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
            +  + Y          + +D  + +  ++EI    +I++ +   + +DQ  SL L+  D
Sbjct: 628 KLGRVYYPA------PYMTNDNLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRD 681

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 682 TATTRDINRAQIYAWRKGIKTIYYIRLRQMA-LEGTEVEGC 721


>gi|325963522|ref|YP_004241428.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469609|gb|ADX73294.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 706

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/715 (24%), Positives = 299/715 (41%), Gaps = 70/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     ++     R   +     + +    +  Y++
Sbjct: 32  REAAHQYFLQHVNNNTVFFHDL-EEKLEYLVKNDYYERETLD-QYTMNFIRELFNRAYKK 89

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R +E  +     VA+ LA      E+ A +  + +
Sbjct: 90  KFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARG---NEQLATQMVDEI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+    T
Sbjct: 147 IEGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 207 NIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   ++    LFSP +V  ++ +   +  +  + Y
Sbjct: 267 KRENADEKIRIKTLSLGVVIPDITFELAKRDEDMYLFSPYDVERVYGMPFSDVSVTEKYY 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D        KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 327 EMVDDSRI--KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRAN--PIDGKIIMSNLC 382

Query: 586 TEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI               + + +   CNLGS+N+         D      TI TA+R L 
Sbjct: 383 SEILQVSQPTTYNDDLSYADTGKDISCNLGSLNIA-----KTMDSPDFGLTIETAIRSLS 437

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D+ N  ++    K N    AIGLG M     L    + Y S E ++  +     + +
Sbjct: 438 AVSDMSNITSVPSIAKGNDQSHAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLP 745
           HA+ AS  LA E    +  F+ S +  G +         +    +VR+    ++  ++  
Sbjct: 498 HAVRASNLLAIETGQTFGGFEKSKYASGEYFDKYTEQEWVPQTEKVRELFKNVHIPTQAD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++             
Sbjct: 558 WLALKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  +  + Y          + +D  + +  A+EI    +I++ +   +
Sbjct: 606 ------------EGKLGRVYYPA------PYLTNDNLEYYQDAYEIGYEKVIDTYAAATQ 647

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 648 HVDQGLSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIRLRQLA-LEGTEVEGC 701


>gi|183981656|ref|YP_001849947.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
 gi|183174982|gb|ACC40092.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
          Length = 721

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/755 (24%), Positives = 304/755 (40%), Gaps = 86/755 (11%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK-----------LRREVLTTVYKKPQKATHHEMQCL 251
           + +S   +  E +Y  + A   L             L        +        H     
Sbjct: 10  VTTSAHALPGETDYHALNAMLNLYDADGKIQFDRDVLAARQFFLQHVNQNTVFFHNQ--- 66

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI- 309
             E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   
Sbjct: 67  -DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTF 124

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367
           +G R  E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG  +  +
Sbjct: 125 DGKRYLERFEDRVVMVALTLASGD---ATLAEKLVDEIIDGRFQPATPTFLNSGKKQRGE 181

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP 
Sbjct: 182 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPI 241

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 242 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 301

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++
Sbjct: 302 ITFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDSRIR--KTKIKAREFFQ 359

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              
Sbjct: 360 TLAELQFESGYPYIMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVG 417

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
           +   CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   
Sbjct: 418 KDISCNLGSLNIAR-----TMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSH 472

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKG 713
           AIGLG M     L   HI Y S E V+  +     + +HA+ AS  +A ERG  +  F  
Sbjct: 473 AIGLGQMNLHGYLAREHIFYGSEEGVDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQ 532

Query: 714 SLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F       + E + E          +   ++  W  LK+ V+  G+ N N  A
Sbjct: 533 SKYASGEFFDKYTERVWEPKTEKVRQLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQA 592

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 593 VPPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVY 628

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + ++    +  A+EI    +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 629 YPA------PYMTNENLDYYQDAYEIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRD 682

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 683 VNKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVAGC 716


>gi|319408169|emb|CBI81822.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           schoenbuchensis R1]
          Length = 711

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/725 (26%), Positives = 308/725 (42%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H+++    E     IEEG   + L   + DF  V   
Sbjct: 31  FDMDRLAARQYFLQHVNQNTVFFHDLK----EKIDYLIEEGYYEKAL-FELYDFSFVKKL 85

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 86  FKHAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQGNK---TLA 142

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 143 ECLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGG 202

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL   H+D
Sbjct: 203 GVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDAFSYANQLGARQGAGAVYLHAHHLD 262

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  + GK F
Sbjct: 263 IMTFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNEDMYLFSP---YDIERVVGKPF 319

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P++ F+D  N  +     G
Sbjct: 320 SDISLTEHYRSFVDNSKIRKKKISARVFFQTLAEIQFESGYPYLLFEDTANRTN--PIAG 377

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            ++ SNLC+EI   + + E               CNLGS+N+     ++ F +     T+
Sbjct: 378 RINMSNLCSEILQVNEASELETDLTYRTIGNDISCNLGSMNIAKAMESSDFGW-----TV 432

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TAVR L  V D+ N   +    K N    AIGLG M     L    I Y SPEA++  +
Sbjct: 433 ETAVRALTAVSDMSNIACVPSIAKGNSESHAIGLGQMNLHGFLARERIYYGSPEAIDFTN 492

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDE 735
                +++H + AS  +A+ER   +  F+ S +  G F    I         L+ E+ + 
Sbjct: 493 IYFYTVAYHVLRASNLIARERQKVFVGFEKSAYADGSFFTKYIETEWKPQFPLVQELFER 552

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   ++  W ELKK V   G+ N N  AI PT +I+ I   + SI P    + ++   
Sbjct: 553 NNIVIPNQEDWKELKKLVIEHGLYNRNLQAIPPTGSISYINHATSSIHPIASKIEIRK-- 610

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N           +  A+EI P  
Sbjct: 611 ----------------------EGKIGRVYYPAPYMDNTNL------DFYQDAYEIGPEK 642

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 643 IIDTYAAATQHVDQGLSLTLFFPDTATTRDVNCAQIYAWKKGIKSVYYIRLRQKA-LSGT 701

Query: 915 TLKGV 919
            + G 
Sbjct: 702 EVDGC 706


>gi|154508381|ref|ZP_02044023.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798015|gb|EDN80435.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
          Length = 718

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/747 (25%), Positives = 315/747 (42%), Gaps = 86/747 (11%)

Query: 211 EKEPNYAKVTARFLLE----KLRREV-------LTTVYKKPQKATHHEMQCLYPEYFCRY 259
             E +Y  + A+  L      ++ +            +        H+++    E     
Sbjct: 15  SPELDYHALNAQLNLYDANGHIQFDADRAAARQYFLQHVNQNTVFFHDLE----EKLKYL 70

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EM 316
           ++EG   + + +     D+  L     Y   F F  +LG    Y  Y L   +G R  E 
Sbjct: 71  VDEGYYEKHVLDQYDFADIKELYKQ-AYAHKFRFPTFLGAFKYYTSYTLKTFDGKRYLER 129

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375
            +     V++ LA  + E    A  F + + +  F  +TPT  N+G     +L SCFL  
Sbjct: 130 FEDRVAMVSLYLARGDIE---LARSFVDEIMTGRFQPATPTFLNAGKAARGELVSCFLLR 186

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+ 
Sbjct: 187 IEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPVMKLLEDSF 246

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+  +   +
Sbjct: 247 SYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITFELARK 306

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  +  E Y    D G I   RKI+A   ++ +  + FE
Sbjct: 307 NEDMYLFSPYDVERVYGVPFSEISVT-EKYHEMVDDGRIHK-RKINARRFFQTIAEIQFE 364

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLG 603
           +G+P+I F+D  N  +     G +  SNLC+EI                   +   CNLG
Sbjct: 365 SGYPYIVFEDTVNKAN--PIKGRITMSNLCSEILQVSEASTYNDDLSYDHVGKDISCNLG 422

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D    + TI  A+R L  V D++   ++    + N    AIGLG M 
Sbjct: 423 SLNIA-----KTMDSSDFSKTIEMAIRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMN 477

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L   H+ Y S EA++  +     + F AI AS ++A+ER   +  F+ S +  G F
Sbjct: 478 LHGYLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETFEGFEESKYASGEF 537

Query: 722 PIDSI-----GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I         + R+ LA   +   ++  W+ L   V   GM N N  A+ PT +I+
Sbjct: 538 FRKYIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYNQNLQAVPPTGSIS 597

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P    + ++                         E  I  + Y       
Sbjct: 598 YINNSTSSIHPIVSRVEIRK------------------------EGKIGRVYYPA----- 628

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
              + ++  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + L+  Y  A
Sbjct: 629 -PYMSNENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSYIYA 687

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGV 919
           W  G+KT YY+R R    +E + ++G 
Sbjct: 688 WKKGIKTLYYMRLRQMA-LEGTEVEGC 713


>gi|315654324|ref|ZP_07907232.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
 gi|315491359|gb|EFU80976.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
          Length = 733

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 185/744 (24%), Positives = 309/744 (41%), Gaps = 80/744 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + E +Y  + A+  L            RE     + +           L  E     +EE
Sbjct: 30  DAEHDYHSLNAKLNLYGEDGKIQFDADREAARQYFLQHVNKNTVFFHDL-REKLDYLVEE 88

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
           G       E   +F+ +    +  Y   F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 89  GYYEAETLE-QYNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 147

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
               VA+ LA  +   E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D
Sbjct: 148 RVCMVALYLARGD---EQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLED 204

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+    
Sbjct: 205 NMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYA 264

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +       
Sbjct: 265 NQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEP 324

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  E Y    D   I+  +KI A   ++ +  + FE+G+
Sbjct: 325 MYLFSPYDVERVYGVPFSDISVT-EKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGY 382

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S               +   CNLGS+N
Sbjct: 383 PYIVFEDTVNRAN--PIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMN 440

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +  F     A +I  A+R L  V D  N   +   ++ N    AIGLG M    
Sbjct: 441 IAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHG 495

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721
            L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +   
Sbjct: 496 CLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEK 555

Query: 722 --PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               D     A+VR+      ++  +   W  L   +K  G+ N N  AI PT +I+ I 
Sbjct: 556 YLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYIN 615

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 616 NSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PY 645

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLM 895
           + +D    +  A+EI    +I++ +   K +DQ  SL L + D  + + ++     AW  
Sbjct: 646 LTNDNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRK 705

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+K+ YY+R R A  +E + ++G 
Sbjct: 706 GIKSLYYIRLRQAA-LEGTEVQGC 728


>gi|260427754|ref|ZP_05781733.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
 gi|260422246|gb|EEX15497.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
          Length = 707

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/750 (24%), Positives = 313/750 (41%), Gaps = 78/750 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+   + +   L + E        R    +         +        H +     E
Sbjct: 6   TDGLDYHALNAMLNLYDAEGRIRFDADRMAARQ-----YFLQHVNQNTVFFHSL----DE 56

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR 313
                +EEG     + ++      ++   D  ++R F F  +LG    Y  Y L     +
Sbjct: 57  KLDYLVEEGYYEAEVLDA-YPRAFLHAIWDAAFKRKFRFPTFLGAFKYYTSYTLKTRDGK 115

Query: 314 --IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
             +E  +   + VA+ LA  +   +  A+ F   + +  F  +TPT  N+G +   +L S
Sbjct: 116 RFLERYEDRVVMVALTLARGD---QALAMSFMEEIVTGRFQPATPTFLNAGKKSRGELIS 172

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+
Sbjct: 173 CFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPIMKL 232

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 233 LEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTF 292

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   +N    LFSP +V  ++ +   E  +  E Y        I+  +KI+A A ++ + 
Sbjct: 293 ELAKRNEEMYLFSPHDVEKVYGVPFSEISVT-EKYAEMVADKHIRK-KKINARAFFQTLA 350

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TA 598
            + FE+G+P+I F+D  N  +     G +  SNLC+EI   + + E              
Sbjct: 351 EIQFESGYPYIMFEDTVNRMN--PIAGRITMSNLCSEILQVNEASEFNEDLSYSRMGTDI 408

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D     +TI TA+R L  V ++ +  ++   +K N    AIG
Sbjct: 409 SCNLGSLNIAR-----TMDGPDFGATIETAIRALTAVSEMSSIESVPSIRKGNDESHAIG 463

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L   H+ Y S E +E        +++HA+ AS  LA+ER   +  F  S +
Sbjct: 464 LGQMNLHGYLAREHVHYGSAEGIEFTSVYFAAVAYHALRASCALAKERGETFKGFADSEY 523

Query: 717 DQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
             G F            +         +   +R  W  LK  V   G+ N N  A+ PT 
Sbjct: 524 ASGAFFDKYTSRDWLPENARVAELFADVTLPTRDDWAALKADVMAHGLYNRNLQAVPPTG 583

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + SI P    + ++                         E  I  + Y    
Sbjct: 584 SISYINNSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPA-- 617

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
                 + ++  + +  A+EI P  LI++ +   + +DQ  SL L+   E + + ++   
Sbjct: 618 ----PFMSNENLEYYRDAYEIGPEALIDTYAAATEHVDQGLSLTLFFPAEATTRDINRAQ 673

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R  T++E + ++G 
Sbjct: 674 IYAWKKGIKTIYYVRLRQ-TALEGTEVEGC 702


>gi|225021559|ref|ZP_03710751.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945550|gb|EEG26759.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 719

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/717 (26%), Positives = 308/717 (42%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       +  +  DFD +       Y  
Sbjct: 43  REAANQFFLQHVNRNTVFFHDL-EEKMEYLVENKYYDPEVL-ARYDFDFIKDLFKQAYAH 100

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G+R  E  +     VA+GLA  +TE    A    + +
Sbjct: 101 KFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADGDTE---LARHLVDEI 157

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 158 MTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 217

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 218 NLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILSFLDT 277

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N+   LFSP +V  ++     +  I  E+Y
Sbjct: 278 KRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSPYDVQRVYGKAFADISIT-EHY 336

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   +   I+  +KI+A   ++ +  + FE+G+P+I F+D  N  +     G V+ SNLC
Sbjct: 337 QEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMFEDVVNRAN--PIAGRVNMSNLC 393

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   +S              E   CNLGS+N+         D    A T+ TA+R L 
Sbjct: 394 SEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AMDSPDFAQTVETAIRGLT 448

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +    H++   +K N    AIGLG M     L    I Y S EA++  +     + +
Sbjct: 449 AVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYGSEEALDFTNAYFAAVLY 508

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEV---RDELAMNRTSR 743
             + AS +LA+ER  ++  F+ S +  G +     P D +   A+V    D  ++   + 
Sbjct: 509 QCLRASNKLARERGQSFGGFEDSEYASGAYFDRFSPADFVPKTAKVQELFDASSITVPTA 568

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W+ LK  V T G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 569 AEWEALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIASRIEIRK---------- 618

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + N         +    A+EI    +I++ +  
Sbjct: 619 --------------EGKIGRVYYPAPHMDNTNL------EYFQDAYEIGYEKVIDTYAAA 658

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 659 TKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEVEGC 714


>gi|118617479|ref|YP_905811.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           ulcerans Agy99]
 gi|118569589|gb|ABL04340.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium ulcerans Agy99]
          Length = 693

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 291/694 (41%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLASGD---ATLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDSRIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAR-----TMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L   HI Y S E V+  +     + +HA+ AS  +A ERG  +  F  S
Sbjct: 446 IGLGQMNLHGYLAREHIFYGSEEGVDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQS 505

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + E          +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTERVWEPKTEKVRQLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + ++    +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNENLDYYQDAYEIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + + G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVAGC 688


>gi|218887121|ref|YP_002436442.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758075|gb|ACL08974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 770

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/658 (26%), Positives = 286/658 (43%), Gaps = 96/658 (14%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVE 341
           D A       +L  RY+    +G   E  +A F R+A  +A +E + +K        A E
Sbjct: 21  DVALNPNARVVLAKRYYRKGPDGQPYEDARALFWRIAGAIAAEEGKYKKSPYKADALARE 80

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 81  FYDLMTGWKFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 140

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   A +  T G + G + FL++ N     + QGG R+GA    L   H D+ E
Sbjct: 141 FSFSRLRPKEARVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIIE 200

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FMK V  +  + L +P                 
Sbjct: 201 FIRAKERDGE----FNNFNLSVGLTEAFMKAVEADEEYDLVAPHTG-------------- 242

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V  ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 243 -------------QVRERLKARKVFEMLVQKAWESGDPGIVFLDRINRDNPTPKQGEIES 289

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA----------------NNQFDYDKLASTI 625
           +N C E  L         CNLGSINL A F                     D+ +L   I
Sbjct: 290 TNPCGEQPLLPYE----ACNLGSINLSAFFVPGTATAREGGLPHPSPEKAIDWAELKRVI 345

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              VR LDNVID +   +E+  ++ H +R IGLG+MG+   L+ L IPY S EA+ + + 
Sbjct: 346 HLGVRFLDNVIDASRFPLERITETVHRNRKIGLGVMGWADLLYQLGIPYDSQEAIGLGER 405

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M+F+     +AS  LA+ERG + +F  S + +                           
Sbjct: 406 MMQFVQDEGRAASKVLAKERGPFPAFAESTFAERDM------------------------ 441

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNS 804
                        RN+    IAPT T++ I G S  I+P +   + ++ M G+    VN 
Sbjct: 442 ----------GPYRNATVTTIAPTGTLSIIAGCSSGIEPLFALCFSRNVMDGERLVEVNP 491

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                L+         + +     GSI  ++ +P+DL++++ TA +I P+W +   +  Q
Sbjct: 492 HFEAALRDTGS-HSKKLMEAVAEKGSIQAMDHLPEDLRRVYVTAMDIAPVWHLRMQAAFQ 550

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           K+ D A S  +   +  S   +  IY  A+  G K     R          T +G   
Sbjct: 551 KYTDNAVSKTVNLPNSASIDDIRAIYWMAYEQGCKGVTVYRDGCKAVQVLCTGEGEKK 608


>gi|227494220|ref|ZP_03924536.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
 gi|226831954|gb|EEH64337.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
          Length = 718

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 185/734 (25%), Positives = 305/734 (41%), Gaps = 79/734 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             + +Y  + A+  L            ++     + +           L  E     + E
Sbjct: 15  SPDLDYHALNAQLNLYDKEGKIQFDADKKAARQYFLQHVNQNTVFFHNL-EEKLNYLVSE 73

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
           G     + +   DFD +       Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 74  GYYEEEVLD-QYDFDFIKSLFKRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 132

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
               VA+ LA    E    A    + + +  F  +TPT  N+G R   +L SCFL  V D
Sbjct: 133 RVSMVALYLARGNKE---VAEYLVDEILAGRFQPATPTFLNAGKRARGELVSCFLLRVED 189

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    + +R  GA I     +S G++P +K+  D     
Sbjct: 190 NMESIARGINSALQLSKRGGGVALSLSNLREAGAPIKRIENQSSGIVPVMKLLEDAFSYA 249

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+  +    N  
Sbjct: 250 NQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNED 309

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   E  +  E Y    + G I+  +KI+A   ++ +  + FE+G+
Sbjct: 310 MYLFSPYDVERVYGVPFTEISVT-EKYREMVEDGRIRK-KKINARRFFQTIAEIQFESGY 367

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S +             +   CNLGS+N
Sbjct: 368 PYIVFEDTVNREN--PIKGRITMSNLCSEILQVSEASTYNEDLTFSHVGKDISCNLGSLN 425

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A T+ TA+R L  V D  N  +    ++ N    AIGLG M    
Sbjct: 426 IAKAV-----DSPDFALTVETAIRGLTAVSDLSNISSAPSIERGNRMSHAIGLGQMNLHG 480

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724
            L    I Y S EA++  +     +++ AI AS ++A+ER  ++  F+ S +  G +   
Sbjct: 481 FLARERIFYGSEEALDFTNMYFYAVTYQAIKASTKIAKERGESFHGFEESKYYTGEYFTK 540

Query: 725 SI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            I          + E+     +   +   W +L   V+  GM + N  AI PT +I+ I 
Sbjct: 541 YIEGEWVPTTDRVKEIFAGSTIYLPTPQDWKDLAAEVRENGMYHQNLQAIPPTGSISYIN 600

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 601 YSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPA------PY 630

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + ++  + +  A+EI P  +I++ +   + +DQ  SL L+  D  S + L+  Y  AW  
Sbjct: 631 MTNENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVSTRDLNKSYIYAWRK 690

Query: 896 GLKTTYYLRSRSAT 909
           G+KT YY+R R   
Sbjct: 691 GIKTMYYMRIRQMA 704


>gi|297570726|ref|YP_003696500.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931073|gb|ADH91881.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 716

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/692 (27%), Positives = 303/692 (43%), Gaps = 69/692 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I EG     + ++  D D+  L     Y   F F  +LG    Y  Y L   +
Sbjct: 64  EEKLDYLITEGYYEPKVFDAYSDDDVKALYKQ-AYAHKFRFPTFLGAFKYYTSYTLKTFD 122

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +   + VA+ LA    E    A    + + +  F  +TPT  N+G +   +L
Sbjct: 123 GKRYLERFEDRVVVVALTLAAGNVE---LAKNLVDEILTGRFQPATPTFLNAGKKARGEL 179

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I   +     L+K  GG+  + + +R LGA I     +S GV P +
Sbjct: 180 VSCFLLRVEDNMESISRGINSALQLSKRGGGVALNLSNLRELGAPIKRIENQSSGVNPVM 239

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 240 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDI 299

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +NA   LFSP +V  ++ +   E  +  E YE   D   I+  + I+A   ++ 
Sbjct: 300 TFELAKKNADMYLFSPYDVERVYGVPFTEISVT-EKYEEMVDDRRIRKTK-INARQFFQT 357

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S                
Sbjct: 358 LAEIQFESGYPYIVYEDTVNRAN--PIDGRITMSNLCSEILQVSEPSRYNADLSYEHVGK 415

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      T+ TA+R L  V D  N   +   ++ N    A
Sbjct: 416 DISCNLGSLNIA-----KTMDSPDFGQTVETAIRALTAVSDQTNIAAVPSIERGNDMSHA 470

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S EA++  +     +++HAI +S+ +A+ERG  +  F+ S
Sbjct: 471 IGLGQMNLHGYLGREKIFYGSDEALDFTNIYFYTVAYHAIRSSMLIAKERGVRFEGFERS 530

Query: 715 LWDQGVFPIDSIGL-----LAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +  G +    I        A VR+  A ++  +   W  L+  V   GM N N  A+ P
Sbjct: 531 AYADGSYFAKYIEREWAPETARVRELFANVHIPTVADWVALRDAVAAHGMYNQNLQAVPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++                         E  I  + Y  
Sbjct: 591 TGSISYINHSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPA 626

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             + N      D K+ +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 627 AYLTN------DNKEYYQDAYEIGPKAIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNK 680

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            Y  AW  G+K+ YY+R R A  ++ + ++G 
Sbjct: 681 SYIYAWRKGIKSLYYMRIRQAA-LDGTEVEGC 711


>gi|303325479|ref|ZP_07355922.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
 gi|302863395|gb|EFL86326.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
          Length = 774

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 167/665 (25%), Positives = 293/665 (44%), Gaps = 91/665 (13%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHF 351
           +L  RY    ++G   E P+  F RVA  +A +E + E+        A +FY+L++ + F
Sbjct: 33  VLQKRYLRKSLDGKLSETPRDLFWRVASAIAAEEGKYERSSCEPEALARDFYDLMTGWKF 92

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 93  LPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKE 152

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ +F+  ++  G+
Sbjct: 153 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILDFIRAKEKEGE 212

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V ++  + L +P+                          
Sbjct: 213 ----FNNFNLSVGLTEAFMQAVEKDEHYDLRAPNTGE----------------------- 245

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V  ++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L 
Sbjct: 246 ----VVDRLRARDVFDLLVKKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 301

Query: 592 SSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                   CNLGSINL   +          A +  D+ +L   +  +VR LDNVID +  
Sbjct: 302 PFE----ACNLGSINLACFYLPGHNDDADPARDGIDWAELRRVVHLSVRFLDNVIDASLF 357

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  ++   +R IGLG+MGF   L  L +PY S E + +A+  M F+      AS EL
Sbjct: 358 PLPRIAETVRKNRKIGLGVMGFADLLFELGVPYNSREGIALAERVMGFVQEEGHKASAEL 417

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ERG + ++  S + +                                   K    RN+
Sbjct: 418 AKERGPFPAYPASTYAK----------------------------------AKKGPYRNA 443

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAM 820
               IAPT T++ I G S  ++P +   + ++ + G+    VN +    L    L    +
Sbjct: 444 TVTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALAATGLAGHEL 503

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
           +  +    GSI +++ +P  L+K+  TA +I+P+W +   +  Q+  D A S  +   + 
Sbjct: 504 MDSVVA-KGSIQDMDFLPAKLRKVFVTAMDIEPVWHLRMQAAFQRHTDNAVSKTVNLSNT 562

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            + + +  IY  A+  G K     R    +    +T +G   K++  P           G
Sbjct: 563 ATEQDIFDIYWLAYKEGCKGVTVYRDGCKSIQVLATGEG-QKKMDGEPAAPSGRVAVQTG 621

Query: 940 IPSSC 944
              + 
Sbjct: 622 RAQAA 626


>gi|169630494|ref|YP_001704143.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           abscessus ATCC 19977]
 gi|169242461|emb|CAM63489.1| Ribonucleoside-diphosphate reductase alpha subunit [Mycobacterium
           abscessus]
          Length = 712

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/751 (25%), Positives = 310/751 (41%), Gaps = 82/751 (10%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY---------PEY 255
           ++      E +Y  + A   L     E      K    A  + +Q +           E 
Sbjct: 3   AAHGSAHGELDYHALNAMLNLYD--AEGKIQFDKDAAAARQYFLQHVNQNTVFFHNQDEK 60

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313
               IE+    R + +     + V    D  Y + F F  +LG    Y  Y L   +G R
Sbjct: 61  LDYLIEKEYYEREVLDQYSR-NFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKR 119

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
             E  +   + VA+ LA  + +    A +  + +    F  +TPT  NSG  +  +  SC
Sbjct: 120 YLERFEDRVVMVALTLAAGDLQ---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSC 176

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+ 
Sbjct: 177 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLL 236

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 237 EDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFE 296

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +N    LFSP +V   + +   +  +  E Y    D G+I+  + I A   ++ +  
Sbjct: 297 LAKKNEDMYLFSPYDVERTYGVPFADINVT-EKYYEMVDNGQIRKTK-IKAREFFQTLAE 354

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAV 599
           + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+              +   
Sbjct: 355 LQFESGYPYIMYEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDIS 412

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   AIGL
Sbjct: 413 CNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIWSVPSIEQGNNDSHAIGL 467

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F  S + 
Sbjct: 468 GQMNLHGYLARERIFYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGTKFGGFDRSKYA 527

Query: 718 QGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F       + E + E          +   ++  W  LK+ V+  G+ N N  A+ PT
Sbjct: 528 SGEFFDKYTDQVWEPKTEKVRQLFADAGIRIPTQDDWLRLKESVQQHGIYNQNLQAVPPT 587

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         E  I    Y   
Sbjct: 588 GSISYINHSTSSIHPVASKIEIRK------------------------EGKIGRAYYPA- 622

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                  + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  S + ++  
Sbjct: 623 -----PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDVNKA 677

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 QIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 707


>gi|304390567|ref|ZP_07372520.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304326323|gb|EFL93568.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 733

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/744 (24%), Positives = 308/744 (41%), Gaps = 80/744 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + E +Y  + A+  L            RE     + +           L  E     +EE
Sbjct: 30  DAEHDYHSLNAKLNLYGEDGKIQFDSDREAARQYFLQHVNKNTVFFHDL-REKLDYLVEE 88

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
           G       +    F+ +    +  Y   F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 89  GYYEEDTLK-QYSFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 147

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
               VA+ LA  +   E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D
Sbjct: 148 RVCMVALYLARGD---EQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLED 204

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+    
Sbjct: 205 NMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYA 264

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +       
Sbjct: 265 NQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEP 324

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  E Y    D   I+  +KI A   ++ +  + FE+G+
Sbjct: 325 MYLFSPYDVERVYGVPFSDISVT-EKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGY 382

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S               +   CNLGS+N
Sbjct: 383 PYIVFEDTVNRAN--PIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMN 440

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +  F     A +I  A+R L  V D  N   +   ++ N    AIGLG M    
Sbjct: 441 IAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHG 495

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721
            L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +   
Sbjct: 496 CLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEK 555

Query: 722 --PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               D     A+VR+      ++  +   W  L   +K  G+ N N  AI PT +I+ I 
Sbjct: 556 YLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYIN 615

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 616 NSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PY 645

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLM 895
           + +D    +  A+EI    +I++ +   K +DQ  SL L + D  + + ++     AW  
Sbjct: 646 MTNDNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRK 705

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+K+ YY+R R A  +E + ++G 
Sbjct: 706 GIKSLYYIRLRQAA-LEGTEVQGC 728


>gi|124516151|gb|EAY57659.1| ribonucleotide reductase [Leptospirillum rubarum]
          Length = 732

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 168/646 (26%), Positives = 279/646 (43%), Gaps = 86/646 (13%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET---EKEKRAVEFYNLL 346
                  L++L  RY        + E P+  F R+A  +A   +   E+E  A E+Y  +
Sbjct: 7   LNLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +S  F+ ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ 
Sbjct: 67  ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +
Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D  +  + N +  I D+FM+ V ++  + L +P                      
Sbjct: 187 M----DLTQVTNFNISVAITDVFMQAVKEDGEYDLIAPHNGE------------------ 224

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V  ++ A  ++ K+    +  G P + F D  N  +P        ++N C 
Sbjct: 225 ---------VVGRLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         CNLGSINL  H         + D+++L  ++  AVR LDNV+D N  
Sbjct: 276 EQVLGPYES----CNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRF 331

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            I +    N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +L
Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G +  ++G    +                                        RNS
Sbjct: 392 AKVHGPFPYYEGIGTRK----------------------------------------RNS 411

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR-DLWDEAM 820
           + + IAPT TI+ I   S   +P +  ++ K+ M G        +   + +R   W + +
Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEIVARREGFWSDGL 471

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +  + GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E
Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + + ++  Y  ++ +G K     R  S  +   +       K  +
Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577


>gi|206602949|gb|EDZ39429.1| Ribonucleotide reductase [Leptospirillum sp. Group II '5-way CG']
          Length = 732

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 171/646 (26%), Positives = 282/646 (43%), Gaps = 86/646 (13%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMGLALKET---EKEKRAVEFYNLL 346
            +     L++L  RY        + E P+  F R+A  +A   +   E+E  A E+Y  +
Sbjct: 7   LSLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +S  F+ ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ 
Sbjct: 67  ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +
Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D  +  + N +  I D+FMK V ++  + L +P                      
Sbjct: 187 M----DLTQVTNFNISVAITDVFMKAVKEDGEYDLIAPHNGE------------------ 224

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V  K+ A  ++ K+    +  G P + F D  N  +P        ++N C 
Sbjct: 225 ---------VVGKLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         CNLGSINL  H       N + D+++L  ++  AVR LDNV+D N  
Sbjct: 276 EQVLGPYES----CNLGSINLERHVRSSATGNPEVDWERLGRSVYLAVRFLDNVVDANRF 331

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            I +    N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +L
Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G +  ++                          +  +R               RNS
Sbjct: 392 AKVHGPFPYYE--------------------------DIGTRK--------------RNS 411

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR-DLWDEAM 820
           + + IAPT TI+ I   S   +P +  ++ K+ M G        +   + +R   W + +
Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEVVARREGFWSDGL 471

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +  + GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E
Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + + ++  Y  ++ +G K     R  S  +   +       K  +
Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577


>gi|227833935|ref|YP_002835642.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454951|gb|ACP33704.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 720

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/742 (26%), Positives = 314/742 (42%), Gaps = 75/742 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           E++ +Y  + A   L            RE     + +           L  E     ++ 
Sbjct: 16  EEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDL-EEKMRYLVDN 74

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
                 L E   DFD +       Y   F F  +LG    Y  Y L     R  + + F 
Sbjct: 75  KYYEPELLE-QYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFE 132

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
            RV+M          K A    + + +  F  +TPT  N+G  +  +L SCFL  + D++
Sbjct: 133 DRVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNM 192

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 193 ESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQ 252

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    
Sbjct: 253 LGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMY 312

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  +  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+
Sbjct: 313 LFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPY 370

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I F+D  N  +P +  G ++ SNLC+EI   +S  E               CNLGS+N+ 
Sbjct: 371 IMFEDTVNRANPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIA 429

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           A       D    A T+ TA+R L  V D    +++   +K N    AIGLG M     L
Sbjct: 430 A-----TMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYL 484

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF----- 721
              HI Y S E ++  +     I + A+ AS +LA+ER   +S F  S +  G F     
Sbjct: 485 GREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYD 544

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           P D      +V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I+ I   
Sbjct: 545 PADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNS 604

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 605 TSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PHMD 634

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  +    ++EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+
Sbjct: 635 NDNLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGI 694

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 695 KTLYYIRLRQMA-LEGTEVEGC 715


>gi|332671992|ref|YP_004455000.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulomonas
           fimi ATCC 484]
 gi|332341030|gb|AEE47613.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           fimi ATCC 484]
          Length = 715

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/717 (24%), Positives = 295/717 (41%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       +     D   +    +  Y +
Sbjct: 39  REAARQYFLQHVNQNTVFFHDL-DEKLDYLVENKYYDPAVLA-QYDRAFIKTLFEYAYSK 96

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R  E  +     VA+ LA  + +    AV   + +
Sbjct: 97  KFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALSLAAGDQD---FAVNLVDEI 153

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    +
Sbjct: 154 VSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQLSKRGGGVALLLS 213

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 214 NIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 273

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++ +   +  +  + Y
Sbjct: 274 KRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSPYDVERVYGVPFADVNVTEKYY 333

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   +        KISA   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC
Sbjct: 334 EMVDNAAIR--KTKISAREFFQTLAELQFESGYPYVMFEDTVNRAN--PIKGKITHSNLC 389

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+                  CNLGS+N+         D      ++ TA+R L 
Sbjct: 390 SEILQVSTPSTFNEDLSYAEVGRDISCNLGSMNIAL-----SMDSPDFGKSVETAIRALT 444

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D     ++   K +N    AIGLG M     L    I Y S E ++  +     +++
Sbjct: 445 AVSDQTDIESVPSVKLANRGGHAIGLGQMNLHGYLARERIFYGSDEGLDFTNIYFYTVAY 504

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSR 743
           HAI AS  LAQER  A+  F+ S +  G +    +      R E          ++  ++
Sbjct: 505 HAIRASNLLAQERKQAFYGFEDSKYATGEYFQKYVEKEWAPRTERVRVLFAEAGVHIPTQ 564

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL   V+  G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 565 DDWRELAALVQEHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK---------- 614

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  + +  A+EI    +I++ +  
Sbjct: 615 --------------EGKIGRVYYPA------PFMTNDNLEYYQDAYEIGYEKVIDTYAEA 654

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R    +E + ++G 
Sbjct: 655 TQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIRLRQLA-LEGTEVEGC 710


>gi|119960800|ref|YP_948076.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           aurescens TC1]
 gi|119947659|gb|ABM06570.1| Ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 727

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/715 (25%), Positives = 300/715 (41%), Gaps = 70/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  +       +  +   L +  M+F          Y++
Sbjct: 53  REAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETLDQYTMNFIRDLFNRA--YKK 110

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R +E  +     VA+ LA  +   E  A    + +
Sbjct: 111 KFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARGD---EDLANRLVDEI 167

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G  +  +L SCFL  + D++  I  A+     L+K  GG+    T
Sbjct: 168 IDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARAINSALQLSKRGGGVALSLT 227

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 228 NIREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIHRFLDT 287

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    +PD+  +   +N    LFSP +V  ++ +   +  +  + Y
Sbjct: 288 KRENADEKIRIKTLSLGVVVPDITFELAKKNEDMYLFSPYDVEKVYGVPFSDISVTEKYY 347

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E   D        KISA   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 348 EMVDDSRI--KKTKISAREFFQTLAEIQFESGYPYIMFEDTVNRAN--PIDGKITMSNLC 403

Query: 586 TEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   SS    A             CNLGS+N+         D      +I T++R L 
Sbjct: 404 SEILQVSSPSIYAEDLSYETVGKDISCNLGSMNIA-----KTMDSPDFGLSIETSIRALS 458

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D++  +++    + N    AIGLG M     L   H+ Y S E ++  +     + F
Sbjct: 459 AVSDMSYINSVPSIAQGNAQSHAIGLGQMNLHGYLAREHVHYGSEEGLDFTNIYFYTVLF 518

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLP 745
           HA+ AS  LA E    +  F+ S +  G F         +     VR+  A  +  ++  
Sbjct: 519 HALRASNRLAIETGQKFGGFEKSTYASGEFFDKYTEQEWVPETERVRELFAGHHIPTQDD 578

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++             
Sbjct: 579 WRELKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRK------------ 626

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y          + +D  + +  A+EI    +I++ +   +
Sbjct: 627 ------------EGKIGRVYYPA------PYLTNDNLEYYQDAYEIGYEKIIDTYAAATQ 668

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 669 HVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQLA-LEGTEVEGC 722


>gi|326381480|ref|ZP_08203174.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199727|gb|EGD56907.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 705

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/729 (25%), Positives = 299/729 (41%), Gaps = 84/729 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     I+E      +     D + V L     Y +
Sbjct: 17  REAARQYFLQHVNQNTVFFHDL-DEKLDYLIKENYYEPEVLAK-YDREFVKLLFGHAYSK 74

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +T     A    + +
Sbjct: 75  KFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLADGDT---ALARHLVDEI 131

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 132 MDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 191

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 192 NVREHGAPIKRIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDT 251

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N    LFSP +V  ++     +  ++ E Y
Sbjct: 252 KRENADEKIRIKTLSLGVVIPDITFQLAKDNDDMYLFSPYDVERVYGKPFADVNVSDE-Y 310

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +   I+  + I A   ++ +  + FE+G+P+I F+D  N  +     G V  SNLC
Sbjct: 311 HAMVEDRRIRKSK-IKAREFFQTLAELQFESGYPYIMFEDTVNRSN--PIDGKVTHSNLC 367

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+  E               CNLGS+N+         D      +I TA+R L 
Sbjct: 368 SEILQVSTPSEFNEDLTYSQVGKDISCNLGSMNIA-----KTMDSPDFGQSIETAIRGLT 422

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D     ++   K++N    AIGLG M     L    I Y S E ++  +     + F
Sbjct: 423 AVADQTSIESVPSIKRANDEGHAIGLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTVLF 482

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE-------------------- 731
           HAI AS ++A+ER   ++ F+ S +  G F       + E                    
Sbjct: 483 HAIRASNKIAKERGTTFAGFEKSKYASGEFFDKYTDQVWEPATEKVREIFANAGPGESGQ 542

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  +  ++  ++  W ELK  V+  G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 543 LFSDNGIHIPTQDDWRELKASVQKYGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEI 602

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +                         E  I  + Y          + +D  + +  A+EI
Sbjct: 603 RK------------------------EGKIGRVYYPA------PYLTNDNLEYYQDAYEI 632

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  S + ++     AW  G+KT YY+R R    
Sbjct: 633 GYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDVNKAQIYAWRKGIKTLYYIRLRQMA- 691

Query: 911 VEKSTLKGV 919
           +E + ++  
Sbjct: 692 LEGTEVENC 700


>gi|114766103|ref|ZP_01445112.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114541658|gb|EAU44699.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 707

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 197/747 (26%), Positives = 322/747 (43%), Gaps = 80/747 (10%)

Query: 207 RTLIEKEPNYAKVTARFLLE----KLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRY 259
              + +  +Y  + A   L      +R +        Y       +        E     
Sbjct: 2   LDRMSETLDYHALNAMLNLYDDEGHIRFDADRMAARQYFLQHVNQNTVFFHSLDEKLDYL 61

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEM 316
           +EEG     + E+      +    D  +++ F F  +LG    Y  Y L     +  +E 
Sbjct: 62  VEEGYYEAEVLEA-YPRAFLQQIWDAAFKKKFRFPTFLGAFKYYTSYTLKTRDGKRFLER 120

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTT 375
            +   + VA+ LA  + +    A+ F   + S  F  +TPT  N+G +   +L SCFL  
Sbjct: 121 YEDRVVMVALALARGDQD---LAMSFMEEILSGRFQPATPTFLNAGKKSRGELISCFLLR 177

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+  D+ 
Sbjct: 178 LEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPIMKLLEDSF 237

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +
Sbjct: 238 SYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKR 297

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LFSP +V  ++ +   E  +  E Y+   +   I+  + I+A + ++ +  + FE
Sbjct: 298 NEPMYLFSPHDVEKIYGVPFSEISVT-EKYDEMVEDKRIRKTK-INARSFFQTLAEIQFE 355

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLG 603
           +G+P+I F+D  N  +     G +  SNLC+EI   + + E               CNLG
Sbjct: 356 SGYPYIMFEDTVNRMN--PIDGRITMSNLCSEILQVNEASEYNEDLSYARMGTDISCNLG 413

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+         D   L +T+  A+R L  V +++   ++   +K N    AIGLG M 
Sbjct: 414 SLNIA-----KSMDGRDLGATVEAAIRALTAVSEMSAIDSVPSIRKGNDESHAIGLGQMN 468

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L   HI Y SPE VE        +++HAI AS  LA+ER  ++  F  S +  GVF
Sbjct: 469 LHGFLAREHIHYGSPEGVEFTSVYFATVAYHAIRASCALAKERGESFKGFAASDYASGVF 528

Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                          +AE+ D +A+   SR  W  LK  V   G+ N N  A+ PT +I+
Sbjct: 529 FDKYTERDWLPESDRVAELFDGIAL--PSRADWAALKADVMEHGLYNRNLQAVPPTGSIS 586

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P    + ++                         E  I  + Y    + N
Sbjct: 587 YINNSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPAAFMNN 622

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
                 D  + +  A+EI P  LIE+ +   + +DQ  SL L+   E + + ++     A
Sbjct: 623 ------DNLEYYRDAYEIGPEALIETYAAATEHVDQGLSLTLFFPAEATTRDINRAQILA 676

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGV 919
           W  G+KT YY+R R  T++E + ++G 
Sbjct: 677 WKKGIKTIYYVRLRQ-TALEGTEVEGC 702


>gi|212704402|ref|ZP_03312530.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
 gi|212672123|gb|EEB32606.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 171/653 (26%), Positives = 283/653 (43%), Gaps = 89/653 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +L  RY         E P+  F RVA  +A +E + E+        A +FY+L++S+ F+
Sbjct: 21  VLQKRYLHKKADGSTETPRDLFWRVASAIAAEEAKYERSPFTAEDLARQFYDLMTSWRFL 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+ +   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   +
Sbjct: 81  PNSPTLMNAASELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPKAS 140

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+ 
Sbjct: 141 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDIVEFIRAKEKEGE- 199

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + + FM+ V ++  + L  P                            
Sbjct: 200 ---FNNFNLSVGLTEAFMQAVERDENYELTDPHTGK------------------------ 232

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
              V   + A  ++  ++   ++TG P I F D  N  +P    G + S+N C E  L  
Sbjct: 233 ---VTGSLRAREIFDLLVCRAWQTGDPGIVFLDRINRDNPTPAQGEIESTNPCGEQPLLP 289

Query: 593 SSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIRTAVRVLDNVIDINCHT 642
                  CNLGSINL   F               D+D L   +  AVR LDNVID +   
Sbjct: 290 YE----ACNLGSINLACFFVPGHASDEDPAAAGIDWDGLKQVVHLAVRFLDNVIDASRFP 345

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++  ++   +R IGLG+MGF   L  L IPY S   + +A+  M FI+    +AS  LA
Sbjct: 346 LDRIDETVRRNRKIGLGVMGFADLLFQLGIPYDSEAGIALAERIMGFINAEGHAASARLA 405

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG + ++  S     VFP    G                               RN+ 
Sbjct: 406 EERGPFPAYAES-----VFPQRGEGPY-----------------------------RNAT 431

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+    VN +    LK+  L    ++
Sbjct: 432 VTTIAPTGTLSIIGGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALKEAGLGTPELM 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
             +    GSI +++ +P  ++K+  TA +IDP+W +   +  Q+  D A S  +      
Sbjct: 492 EQVVE-KGSIQSLDALPAAMRKVFVTAMDIDPVWHLRMQAAFQRHTDNAVSKTVNLPHSA 550

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + + +  IY  A+  G K     R    +    +T +G        P      
Sbjct: 551 TEQDIHDIYWLAYKEGCKGVTVYRDGCKSLQVLATGEGQKKMDGEAPAPAEKP 603


>gi|300932706|ref|ZP_07147962.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           resistens DSM 45100]
          Length = 720

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 186/762 (24%), Positives = 320/762 (41%), Gaps = 82/762 (10%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLE----KLR----REVLTTVYKKPQKAT 244
           ++ S++   +         ++ +Y  + A   L      ++    RE     + +     
Sbjct: 1   MTTSEIGKTVAEPVSE--SEQLDYHALNAMLNLYDKNGNIQFDKDREAANQFFLQHVNQN 58

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYD 303
                 L  E     +E     + + ++  DF  V       Y + F F+ +LG    Y 
Sbjct: 59  TVFFHDL-QEKLHYLVENKYYDKSVLDN-YDFPFVKSLFKRAYAKKFRFQSFLGAYKYYT 116

Query: 304 RYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            Y L   NG R  E  +     VA+GLA         A +  + +    F  +TPT  N 
Sbjct: 117 SYTLKTFNGKRYLERFEDRVCMVALGLAAG---NRALAEDLVDEIMDGRFQPATPTFLNI 173

Query: 362 GT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           G  +  +  SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +
Sbjct: 174 GKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQ 233

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 234 SSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 293

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               IPD+  +    N    LFSP +V  ++     +  ++ E+YE   +   I+  +KI
Sbjct: 294 LGVVIPDITFELAKNNDDMYLFSPYDVERIYGKAFADVPVS-EHYEEMVEDPRIRK-QKI 351

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
           +A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+       
Sbjct: 352 NARQFFQTLAEIQFESGYPYIMFEDTVNRAN--PIEGRITHSNLCSEILQVSTPSVFNAD 409

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAK 647
                  +   CNLGS+N+         D +  + TI TA+R L  V D     ++   +
Sbjct: 410 LTYETIGDDISCNLGSLNIAKAV-----DSENFSKTIETAIRGLTAVADQTSIDSVPSVR 464

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
           + N    AIGLG M     L   HI Y S EA++  +     + + AI AS  +A+ER  
Sbjct: 465 QGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALDFTNVYFAAVMYEAIKASNTIAKERGE 524

Query: 707 AYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ++++F+ S +  G F               + E+ +  ++   +   W  LKK V+  G+
Sbjct: 525 SFTNFENSDYASGEFFDRYDPAEFQPITERVREIIENSSIQVPTADDWAALKKSVQEHGL 584

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            N N  A+ PT +I+ I   + SI P    + ++                         E
Sbjct: 585 YNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK------------------------E 620

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
             I  + Y          + ++    +  A+EI    +I++ +   K++DQ  SL L+  
Sbjct: 621 GKIGRVYYPA------PYMTNENLDYYEDAYEIGFEKIIDTYAVATKYVDQGLSLTLFFK 674

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           D  + + ++     AW  G+KT YY+R R    V  + ++G 
Sbjct: 675 DTATTRDINRAQIYAWRKGIKTIYYIRLRQTALV-GTEVEGC 715


>gi|300870142|ref|YP_003785013.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           pilosicoli 95/1000]
 gi|300687841|gb|ADK30512.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 771

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/813 (25%), Positives = 373/813 (45%), Gaps = 95/813 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L+ ++  A  G +  ++ ++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLKKVINWATDGKEGFTNALLEGLNIK-INDRMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I    P+Y  +  +  L K+ +E      KK     H +       +  + ++  V 
Sbjct: 71  VNKISPLYPSYDTIAEKLYLMKIYKET--CKLKKTGSYPHIKT------FLKKGVKHKVY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + +     D +L  + + +  +RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKNIVSLFSDKELDKINSMIVPDRDLLFTYKGLAIFYRKYCKNIGSKKLELPQITYMVAA 182

Query: 326 MGLALKE--------------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +              T++ K     Y++LS      +TP + NS +  PQL+SC
Sbjct: 183 MFSFYDDFYKGANKDIVEKTKTDRLKYIKRTYDMLSKHEVTFATPRIANSMSIRPQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G +PF+K  
Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQSNRGRSDGPVPFIKRT 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++  +
Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNILRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ +G+ F +AY  YE ++   +    ++I A  L  ++L 
Sbjct: 363 RVNKDEYITLFDPKETPLLNEEFGENFNVAYIYYESKSSIRK----KRIKAKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSP-QQHVG---------------------VVHSSNLCTEIT 589
           +  ETG+ ++TF D  N ++   + VG                      V + +   EI 
Sbjct: 419 VRQETGNLYLTFVDNINEQNMVNKFVGASNLCQEIVIPSFPSKLIEEKYVVNEDGSYEIV 478

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               S E  +CNL S+NL++      F  +K  S   T +R  DN+ID   + +++ + +
Sbjct: 479 QRKKSGEIGICNLVSVNLMSWV---NFSEEKKKSFCYTLLRGCDNIIDSQFYPVKEGEIA 535

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +R IG+G++ + + L    + Y   EA+E  ++  E + +H   AS  LA+ERG Y 
Sbjct: 536 NKKNRPIGIGVINYANLLASNKLKYTDKEALEFTNKIFEDLYYHIYEASNILAKERGPYK 595

Query: 710 SFKGSLWDQGVFPID--SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +F  S W +G  P+    +   + ++ ++ M++     W++L + +K  G+R S   AIA
Sbjct: 596 TFNESKWREGKTPVHISLLNKSSNLKFDIDMDK-----WNKLAENIKNYGVRFSFHGAIA 650

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTAT       ++SI+P     +V+     +       L   LK+               
Sbjct: 651 PTATSGKSVSATESIEPIVDLFFVE-----EGIQTLPSLAPNLKK--------------- 690

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                         ++ +   ++I    +IE A+ RQ++IDQ+QSLNLY  +P S K+L 
Sbjct: 691 -------------NREYYERCWDIPAKTIIELAAIRQRYIDQSQSLNLYYVKPDSAKELW 737

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              + A  +GLKT YY+++   ++ E   +   
Sbjct: 738 DDIQYAMDLGLKTLYYMKT-PKSNFELEEVCES 769


>gi|284009250|emb|CBA76358.1| ribonucleoside-diphosphate reductase alpha chain [Arsenophonus
           nasoniae]
          Length = 709

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/739 (24%), Positives = 308/739 (41%), Gaps = 78/739 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKP--QKATHHEMQCLY-----PEYFCRYIEEGVKAR 267
           +Y  + A   L     ++     K+       HH  Q         E     + E     
Sbjct: 10  DYHALNAMLNLYDNDNKIQLDKDKQAAYHYFRHHVNQNTVFFHNLQEKLDFLVAENYYES 69

Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRV 324
            +     +F  +       Y   F F  +LG    Y  Y L     R  +E  +     V
Sbjct: 70  AILA-QYEFTFIKKLFQQAYNHKFRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMV 128

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383
           A+ LA    E    A +  N + S  F  +TPT  N G  +  +L SCFL  + D++  I
Sbjct: 129 ALTLAQGNQE---LASQLVNEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESI 185

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 186 GRSVNSALQLSKRGGGVAFLLTNLREAGAPIKLIENQSSGVIPVMKMLEDAFSYANQLGA 245

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+       N    LFS
Sbjct: 246 RQGAGAVYLHAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKNNQDMYLFS 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P ++   + +   E  I  E Y    +   I+  +KI+A   +  +  + FE+G+P+I F
Sbjct: 306 PYDIERCYGVPMSEIAIT-EKYSEMVNNKNIRK-QKINAREFFLTLAEIQFESGYPYILF 363

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611
           +D  N  +     G ++ SNLC+EI   + +             +   CNLGS+N+    
Sbjct: 364 EDNANRLN--PIYGRINMSNLCSEILQVNDASIYDENLDYRHVGKDISCNLGSMNIA--- 418

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D    A +I  A+R L  V D++   ++   ++ N    AIGLG M     L   
Sbjct: 419 --KTMDSPNFAHSIEIAIRALTAVSDMSQIQSVPSIQEGNKKSHAIGLGQMNLHGYLARE 476

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLL 729
           HI Y S E ++  +     ++++A+ AS +LA E + A+S F  S +  G +    I   
Sbjct: 477 HIYYGSEEGIDFTNIYFYTVTYYALQASNKLAIERQHAFSGFAHSKYASGEYFEKYINQQ 536

Query: 730 AEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            + + E         A++  +   W +LK+ +   G+ N N  AI PT +I+ I   + S
Sbjct: 537 WQPKTEKIKQLFQRSAIHIPTCEDWQQLKQSIMEHGIYNQNLQAIPPTGSISYINHSTSS 596

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I P    + ++                         E  I  + Y          + ++ 
Sbjct: 597 IHPIVARIEIRK------------------------EGKIGRVYYPA------PYLTNEN 626

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900
            + +  A++I    +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT 
Sbjct: 627 LEYYQDAYQIGAEKIIDTYAAATQHVDQGLSLTLFFTDDATTRDINRAQIYAWKKGIKTL 686

Query: 901 YYLRSRSATSVEKSTLKGV 919
           YY+R R +T +E + +KG 
Sbjct: 687 YYIRIRQST-LEGTEVKGC 704


>gi|292489179|ref|YP_003532066.1| ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           amylovora CFBP1430]
 gi|292900296|ref|YP_003539665.1| ribonucleoside-diphosphate reductase 2 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291200144|emb|CBJ47270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Erwinia
           amylovora ATCC 49946]
 gi|291554613|emb|CBA22272.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           CFBP1430]
          Length = 716

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/752 (24%), Positives = 311/752 (41%), Gaps = 84/752 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-----HHEMQCL-----YPE 254
           +     E   +Y  + A   +  L  +     ++K Q AT      H +          E
Sbjct: 7   TFLEAAEATADYHALNA---MLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAE 63

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +   F+ V         R F F  +LG    Y  Y L   +G 
Sbjct: 64  RLQFLVAEGYYEAEVL-NAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGK 122

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A+   + + S  F  +TPT  N G +   +L S
Sbjct: 123 RYLESFTERVCMVALTLAKGDQP---LALALADEILSGRFQPATPTFLNCGKQQRGELVS 179

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 180 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 239

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 240 LEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITF 299

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LFSP +V  ++ L   +  I+ + +E  AD    + F  I+    ++ + 
Sbjct: 300 QLAKDNQQMALFSPYDVERIYALPFADISISEKYHEMLADTRIRRTF--INPREFFQTLA 357

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N  +     G ++ SNLC+EI   ++  E              
Sbjct: 358 EIQFESGYPYIMFEDTVNRAN--PVHGRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDI 415

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+  AVR L  V D +  H++   ++ N    AIG
Sbjct: 416 SCNLGSLNIA-----HAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +
Sbjct: 471 LGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRY 530

Query: 717 DQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +G   + R         +  +   ++  W  LK+ V   G+ N N  AI P
Sbjct: 531 ASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 591 TGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN-------------------- 630

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                     +D +  +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 631 ----------NDNQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINR 680

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    ++ + ++G 
Sbjct: 681 AQIYAWKKGIKTLYYIRLRQMA-LQGTEVEGC 711


>gi|237729634|ref|ZP_04560115.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226908240|gb|EEH94158.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 714

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 186/730 (25%), Positives = 312/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K  +  E     + +P        Q    E     +++G     +  +  D  
Sbjct: 29  AGRIQFDKDHQAVEAFFAAHVRPNSVAFASQQ----ERLETLVDKGYYDASVL-ARYDRA 83

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V    D  +   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +  
Sbjct: 84  FVLKLFDHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD-- 141

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 142 -ETLAMQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 200

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 201 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 260

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  K   +NA   LFSP +V  ++  
Sbjct: 261 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSPYDVERIYGK 320

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  ++    E  A   E    + I+A   ++++  + FE+G+P+I F+D     S  
Sbjct: 321 PFGDIAVSERYDELLA--DERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTV--NSAN 376

Query: 574 QHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+                 CNLGS+N+      +  D    
Sbjct: 377 PIAGRINMSNLCSEILQVNSASTYDENLNYAQTGHDISCNLGSLNIA-----HTMDSPDF 431

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPE +
Sbjct: 432 GRTVETAVRGLTAVSDMSHIRSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGL 491

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRD 734
           +  +     I++HA++ S+++A+ER   ++ FK S +  G +       D      +VR 
Sbjct: 492 DFTNIYFYTITWHALNTSMKIARERGQTFAGFKQSRYASGEYFNQYLQGDWQPKTDKVRA 551

Query: 735 ELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             A   +   +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 552 LFAASGITLPTREMWSQLREDVMHYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEI 611

Query: 792 KS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 612 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 640

Query: 851 IDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R   
Sbjct: 641 IGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQLA 700

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 701 -LEGTEIEGC 709


>gi|15827932|ref|NP_302195.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae TN]
 gi|221230409|ref|YP_002503825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae Br4923]
 gi|13093485|emb|CAC30687.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae]
 gi|219933516|emb|CAR71829.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae Br4923]
          Length = 693

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 292/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKSLLDRAYAKKFRFSTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERLEDRVCMVALTLAAGDTG---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSVNSALQLSKRGGGVALLLSNIREHGAPIKNIEHQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVIIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFS  +V  ++++   +  +  + YE   D        KI A   ++K
Sbjct: 275 TFELAKRNEDMYLFSSYDVERVYEVPFADISVTEKYYEMLDDARIR--KTKIKAREFFQK 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYVMFEDTVNRAN--PIEGKITHSNLCSEILQVSTPSLFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A T+  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTVEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGS 714
           IGLG M     L    I Y S E V+  +     + FH + AS  +A ERG +   F+ S
Sbjct: 446 IGLGQMNLHGYLSREGIFYGSEEGVDFTNIYFYTVLFHVLLASNSIAIERGTFFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    I    E +         E A+   ++  W  LK+ V   G+ N N  A+
Sbjct: 506 KYASGEFFDKYIEQTWEPKTDKVRQLFAEAAIRIPTQNDWKRLKELVVAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLQYYQDAYEIGYQKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|320161749|ref|YP_004174974.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
 gi|319995603|dbj|BAJ64374.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
          Length = 868

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 174/676 (25%), Positives = 300/676 (44%), Gaps = 41/676 (6%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVEFY 343
                    Q+L  RY     +G+  E     F RVA  +A  E      +   RA EFY
Sbjct: 26  KIELTENARQVLIRRYVRRNDDGTPAESVDEMFWRVAYNIAKVEVSFGNPDVMTRAREFY 85

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGG 399
            LL+S  F  ++PT   +GT   QL++CF+  + DD+     GIF  L++ A++ +  GG
Sbjct: 86  ILLTSKKFFPNSPTFTGAGTPLGQLAACFVLPIVDDMGRDSMGIFQTLRDAALIQQTGGG 145

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
            G  ++ +R  G  +  ++G++ G + FL+V +     + QGG R+GA    L   H D+
Sbjct: 146 NGFSFSRLRPKGTVVKSSSGQATGPVGFLRVYDHAFGEIAQGGTRRGANMGVLRVDHPDI 205

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEF+  +     D     + N +  I D FM+ V ++A W L  PD    + D   + F 
Sbjct: 206 EEFITCKT----DENAITNFNISVGITDAFMRAVKEDAEWELRFPD----VTDPRYRTFR 257

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E  E++     I+ ++K+ A  L+ K++      G P + F D  N  +P  H+  +
Sbjct: 258 GTLEQAEQEGIP--IRTYKKVRARDLFNKIVKQAHHNGEPGVLFLDAANRSNPVPHLYQL 315

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDI 638
            ++N C E  L         C LGS+NL  H  +N   D++ L  ++  +   LD+V++ 
Sbjct: 316 EATNPCGEQYLGPYEN----CCLGSVNLAQHLGDNGTVDWEGLRQSVVLSTIFLDDVVEA 371

Query: 639 NCH--TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           N +   + + +++    R IGLG+MG    ++   I Y SPE  E A + MEFI +HA+ 
Sbjct: 372 NAYVPAVPQLREAAMRARRIGLGIMGLADLMYHCGIRYGSPEGQEFAAQVMEFIRYHAMQ 431

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S+ELAQ+RGA+ +  GS++D              +           + WD + + ++  
Sbjct: 432 TSIELAQQRGAFPAIHGSIYDPENL---KWAPPQSIVPYTHDYGRPPIDWDIITEGIRKH 488

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF----TVVNSFLVNELK 811
           G+RN+    IAPT TIA + G      +P +   Y++              +      + 
Sbjct: 489 GIRNAAQTTIAPTGTIATVAGCEGYGCEPVFALAYIRHVNDNGKDLQLIYASPAFEKAIA 548

Query: 812 QRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +  +  E     L     +G+  +I+ +P+ ++ +   + +I     +   +  Q ++D 
Sbjct: 549 RAGIEAEKRQEILEQIMREGTCQHIKDLPEAIRNVFVVSADITAEEHVRMQAALQAFVDN 608

Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S  +   E  + + +   Y  AW +G K      + S   V   TLK  + K      
Sbjct: 609 SLSKTINFPEGATEEDVATAYMLAWELGCKGITVYVTGSREKVVLETLKTAEKKKGE--- 665

Query: 929 TDPNSSTHSLGIPSSC 944
           TD         +P   
Sbjct: 666 TDEKEEVEKSPVPQPL 681


>gi|319948550|ref|ZP_08022681.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
 gi|319437797|gb|EFV92786.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
          Length = 693

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/694 (25%), Positives = 297/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +E+    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLVEKDYYEREVLDQYTR-NFVRELFDHAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E  A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERYEDRVCMVALTLAAGD---ETLARQLVDEIIEGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREHGAPIKHIENQSSGVIPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     + +I+  NY    +   I    KI+A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERIYGKPFADVDIS-ANYHEMVEDSRI-KKTKINARHFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S++ E            
Sbjct: 333 VAELQFESGYPYIMYEDTVNRAN--PIAGKITHSNLCSEILQVSTASEFNEDLTYSHVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      TI TA+R L  V D    +++   ++ N    A
Sbjct: 391 DISCNLGSLNIA-----KAMDSPDFGRTIETAIRGLTAVSDQTHINSVPSIERGNSESHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ +S  +A+ERG  ++ F  S
Sbjct: 446 IGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALRSSNLIARERGTWFAGFPES 505

Query: 715 LWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F         E        +  E  +   ++  W  LK  V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQTWEPATDRVRQLFAEAEVAIPTQEDWRALKADVQKYGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINNSTSSIHPVASKIEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D    +  A+EI    +I++ +   + +DQ  SL L+  D  + +++
Sbjct: 602 PA------PYLTNDNLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTREV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NRAQIYAWRKGIKTLYYIRVRQLA-LEGTEVEGC 688


>gi|262184938|ref|ZP_06044359.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 716

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/742 (26%), Positives = 314/742 (42%), Gaps = 75/742 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           E++ +Y  + A   L            RE     + +           L  E     ++ 
Sbjct: 12  EEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDL-EEKMRYLVDN 70

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
                 L E   DFD +       Y   F F  +LG    Y  Y L     R  + + F 
Sbjct: 71  KYYEPELLE-QYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRRYL-ERFE 128

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
            RV+M          K A    + + +  F  +TPT  N+G  +  +L SCFL  + D++
Sbjct: 129 DRVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNM 188

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 189 ESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQ 248

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    
Sbjct: 249 LGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKNNDDMY 308

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  +  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+
Sbjct: 309 LFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPY 366

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I F+D  N  +P +  G ++ SNLC+EI   +S  E               CNLGS+N+ 
Sbjct: 367 IMFEDTVNRANPVK-TGRINMSNLCSEILQVNSPSELNEDLTYKTLGSDISCNLGSLNIA 425

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           A       D    A T+ TA+R L  V D    +++   +K N    AIGLG M     L
Sbjct: 426 A-----TMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQMNLHGYL 480

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF----- 721
              HI Y S E ++  +     I + A+ AS +LA+ER   +S F  S +  G F     
Sbjct: 481 GREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGEFFDRYD 540

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           P D      +V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I+ I   
Sbjct: 541 PADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSISYINNS 600

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 601 TSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PHMD 630

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  +    ++EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+
Sbjct: 631 NDNLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGI 690

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 691 KTLYYIRLRQMA-LEGTEVEGC 711


>gi|300088374|ref|YP_003758896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528107|gb|ADJ26575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 902

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/645 (28%), Positives = 287/645 (44%), Gaps = 84/645 (13%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYN 344
           AF    L +L  RY      G  IE P+    RVA  +A  E   +          EFY 
Sbjct: 154 AFSDNALAVLNKRYLKKDKQGQAIEAPEDMLRRVARTVAAAELIYDPKCNVRNVENEFYG 213

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   F+ ++PTL N+G    QLS+CF+  + D +  IF A++  AM+ K  GG G  +
Sbjct: 214 LMARLEFLPNSPTLMNAGRELGQLSACFVLPIDDSIESIFDAVKHTAMIHKSGGGTGFSF 273

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+E F+ 
Sbjct: 274 SRLRPESDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIEHFIT 333

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G       + N +  I D FM+    +  + L +P                    
Sbjct: 334 AKQQAGV----LTNFNLSVAITDKFMEAARADEEYELINP-------------------- 369

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                  GE+   R+  A A++ +++ + ++TG P I F D  N  +P   +G + S+N 
Sbjct: 370 -----QNGEVAGRRR--ARAIFDQIVQLAWKTGDPGIVFIDRINAENPTPKLGRIESTNP 422

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN---QFDYDKLASTIRTAVRVLDNVIDINCH 641
           C E  L         CNLGS+NL      N   Q DYDKL  T+RTAVR LD+VID+N  
Sbjct: 423 CGEQPLLPYES----CNLGSVNLSKMVKGNGKKQVDYDKLRYTVRTAVRFLDDVIDVNKF 478

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+  +     R IGLG+MGF   L  L +PY SPEA+ + +E M FI   +  AS  L
Sbjct: 479 PLEQIAEQTRRTRKIGLGVMGFADMLIALGVPYNSPEALRVGEEVMGFIQAESHRASSAL 538

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A ERG + +++GS +D                                      + MRN+
Sbjct: 539 ADERGVFPAYEGSKYD------------------------------------GQVKMRNA 562

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAM 820
           +C  IAPT T++ I G S  I+P +   + ++ M G     VN +     +    + E +
Sbjct: 563 SCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNIMDGTRMIEVNPYFAEAARSGGFYSEEL 622

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  L      + +++ +P+++KK+  TA  I P   ++  +  QK+ D A S  +    +
Sbjct: 623 MKKL-AEGAHLEDMKEVPEEVKKLFVTAHSITPEGHVKMQAAFQKYTDNAVSKTVNFPAD 681

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            +   ++ +Y  A+   LK     R         ST K    K  
Sbjct: 682 ATVAHVEEVYLMAYDEKLKGITIYRDGCKADQPMSTGKAEPAKAE 726


>gi|260599070|ref|YP_003211641.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260218247|emb|CBA33171.1| Ribonucleoside-diphosphate reductase 2 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 716

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/747 (25%), Positives = 310/747 (41%), Gaps = 88/747 (11%)

Query: 212 KEPNYAKVTARFLLEK------LRR-----EVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             P+Y  + A   L          +     E     + +P+  T  +            +
Sbjct: 14  TTPDYHALNAMLNLYDADGRIQFEKDREAVEAFMAAHVQPRSVTFPDTHAR----LAYLV 69

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMP 317
            EG     + +   D D      D  +   F F  +LG    Y  Y L   +G R  E  
Sbjct: 70  SEGYYDENVLK-RYDPDFAAGLFDEAHRDGFTFKTFLGAWKFYTSYTLKTFDGKRYLEHF 128

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTV 376
                 VA+ LA  +   E  A +    + S  F  +TPT  N G +   +L SCFL  +
Sbjct: 129 PDRACMVALTLACGD---ETLARQILKEILSGRFQPATPTFLNGGKQQRGELVSCFLLRI 185

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D   
Sbjct: 186 EDNMESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFS 245

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N
Sbjct: 246 YANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKAN 305

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A   LFSP +V  ++     +  ++ E Y +  +  E    R ISA  L++++  + FE+
Sbjct: 306 AQMALFSPYDVEHIYGKPFGDISVS-EMYTQLVED-ERIRKRYISARELFQRLAEIQFES 363

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGS 604
           G+P+I F+D  N  +     G ++ SNLC+EI               +++     CNLGS
Sbjct: 364 GYPYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGS 421

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+      +  D      T+ TAVR L  V D++   ++   +  N    AIGLG M  
Sbjct: 422 LNIA-----HTMDSPDFGRTVETAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 476

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPE ++  +     +++HA++ S+ LA+ER   +  F+ S +  G + 
Sbjct: 477 HGYLAREGIAYGSPEGLDFTNLYFYTVTWHALNTSMMLARERGERFEGFEASRYASGEYF 536

Query: 723 IDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +          +AE+     +   +   W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 537 DKYLTQTWTPRTARVAELFARAGITLPTPEMWRQLRDDVMRHGLYNRNLQAVPPTGSISY 596

Query: 775 ICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++     G       F+ NE   R                    
Sbjct: 597 INHATSSIHPIVSKIEIRKEGKIGRVYYPAPFMTNENLAR-------------------- 636

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892
                      +  A+EI P  +I++ +   + +DQ  SL L + D  + + ++     A
Sbjct: 637 -----------YQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 685

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGV 919
           W  G+KT YY+R R    +E + ++G 
Sbjct: 686 WKKGIKTLYYIRLRQLA-LEGTEIEGC 711


>gi|209972894|ref|YP_002300341.1| gp2.9 [Bacillus phage SPO1]
 gi|209871214|gb|ACI90970.1| gp2.9 [Bacillus phage SPO1]
          Length = 756

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/792 (28%), Positives = 357/792 (45%), Gaps = 109/792 (13%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           +E    G +D   +   ++  K +  G    D+ T    +   +    P +  + AR +L
Sbjct: 14  LEFVLRGHEDSKVETYRTQVEKAIARG---EDINTITNLALVRVDIDTPEWNFIAARSIL 70

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             L  +    +                 +     I  G     L E   + ++    + +
Sbjct: 71  FDLYYKA-GQLRGDQNPV----------QRIKELINNGQYGSFLLEKYTEDEINQAYSFI 119

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQAFFMRVAMGLALKETEKEK--R 338
             ERD   ++ G+ +L DRY      S+      E+PQ  ++ +A+ L   E  +++   
Sbjct: 120 DTERDLLLDHSGIMMLNDRYLFKYKDSKGNMHPYELPQERWLTIALTLMQDEKPEKRMDL 179

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             + Y +LS+ +   +TPT+ N+G    QLSSCF+ TV D L  I+   +++AM++K+ G
Sbjct: 180 VKKAYWVLSNLYITVATPTMGNAGRPDGQLSSCFIGTVEDSLDNIYDNNKDSAMVSKFGG 239

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G     +R L ++I G  GKSQGVIP++K   +TA +V+Q G+RKGA+  YL+ WH D
Sbjct: 240 GIGVYMGKIRSLNSYIRGMKGKSQGVIPWIKGLENTANSVDQLGQRKGAIAVYLDIWHKD 299

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK---------RVTQNAGWTLFSPDEV-- 507
           V EFL +  N GD+RR+  D+     +PDLFM+         +V  +A W LF P EV  
Sbjct: 300 VMEFLQIGTNNGDERRKARDVFPGLCVPDLFMEKLQPNPETGKVDPDAKWYLFDPHEVRM 359

Query: 508 ---SDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                L D Y +E     +     +     +    ++    + +  +  L ETG P++ F
Sbjct: 360 VMGYSLEDSYDEEEGAGTFRKRYMECVNSPLLSRTEVLVKDVAKAFMVSLMETGMPFMFF 419

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------------SEETAV 599
           +D  N ++P +H G+++ SNLCTEIT N S                          +  V
Sbjct: 420 RDEVNRKNPNKHAGMIYCSNLCTEITQNMSPTVQVEEYVENEDTDEAMIVYKVKPGDYVV 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NL   + +       L   I   VR+LDNVID+N    ++A  +N  +RAIGLG
Sbjct: 480 CNLSSVNLGKAYPSGH-----LEDIIDIQVRMLDNVIDVNNLPRKQATLTNKKYRAIGLG 534

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+   L +  I + S E+VE AD+  E I++ A+ AS ++A+E+G Y +F+GS +  G
Sbjct: 535 TFGWHHLLAVSGIKWDSEESVEFADKVYEKIAYLALRASADIAKEKGTYRAFEGSDFHTG 594

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            +                 +  S   WD LK+     G+RN++ +A+AP    A I G +
Sbjct: 595 DYFN----------IRGYKSEGSEHDWDTLKEDCMNTGIRNAHVLAVAPNGNTALIAGST 644

Query: 780 QSIDPSY--QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           Q ID  Y    +Y +        V+                                +  
Sbjct: 645 QGIDAFYTGTGIYYEEKKDFKIPVIAP------------------------------DMS 674

Query: 838 PDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
           P        + AF++   + I   + RQK IDQ+ S N+Y+      K +  I    W  
Sbjct: 675 PKTFPYYWKSGAFDVSHEYTIRQNAMRQKHIDQSVSFNIYIKSDIKFKDILNIINTCWKN 734

Query: 896 GLKTTYYLRSRS 907
            LKTTYY R +S
Sbjct: 735 KLKTTYYFRGQS 746


>gi|240169544|ref|ZP_04748203.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           kansasii ATCC 12478]
          Length = 693

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/694 (25%), Positives = 296/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + V++ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVSLTLAGGDT---TLAEQLVDEIIEGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   +        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDNPRIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+               
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSYFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPNFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNESHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  ++ ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVLYHALRASNRISIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + E          ++  ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTEQIWEPKTEKVRRLFAAADIHIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+ +D  + +++
Sbjct: 602 PA------PYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFMDTATTREV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|227496666|ref|ZP_03926942.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
 gi|226833814|gb|EEH66197.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
          Length = 717

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 186/757 (24%), Positives = 310/757 (40%), Gaps = 80/757 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQ 249
           +   L  +    ++   +Y  + A+  L             E     + +          
Sbjct: 1   MADTLTDTGSETVDPSLDYHALNAKLNLYDANGQIQFDADHEAARQYFLQHVNQNTVFFH 60

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
            L  E     +EEG     + +     D V       Y   F F  +LG    Y  Y L 
Sbjct: 61  DL-EEKLEYLVEEGYYEGHILDKYSP-DFVKQVFKAAYAHKFRFQTFLGAFKYYTSYTLK 118

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA  +   E+ A++    + +  F  +TPT  N G  + 
Sbjct: 119 TFDGKRYLERFEDRVSMVALALADGD---EQLALDLVEEMMTGRFQPATPTFLNEGKAQR 175

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +  SCFL  + D++  I   +     L+K  GG+    T +R +GA I     +S GV+
Sbjct: 176 GEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLTNLREMGAPIKRIQNQSSGVV 235

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 236 PVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVI 295

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD+  +         LFSP +V  ++ +   +  +  E Y    D   I   R I A   
Sbjct: 296 PDITFELAKNKEPMYLFSPYDVERVYGVPFSDISVT-EKYREMVDDPRIHKTR-IDARQF 353

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------- 595
           ++ +  + FE+G+P++ F+D  N  +     G V  SNLC+EI   S +           
Sbjct: 354 FQTLAEIQFESGYPYVMFEDTVNKAN--PIKGKVIMSNLCSEILQVSEASTLNEDLSFAH 411

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
             +   CNLGS+N+         D      TIRTAVR L  V D  +  ++    + NH 
Sbjct: 412 VGKDISCNLGSLNIA-----KTMDSPDFMRTIRTAVRGLTAVSDQVDLPSVPSINRGNHE 466

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y S E ++  +     + + A++A+ ELA ER  ++  F
Sbjct: 467 SHAIGLGQMNLHGYLARERIFYGSEEGLDFTNVYFACVLYAALTATNELAVERGESFVGF 526

Query: 712 KGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G F               + E+ +  ++   +R  W  L KR++  GM N N 
Sbjct: 527 EDSDYYSGAFFEKYTAQDFLPVTDKVKELFERSSITVPTREDWAALAKRIRETGMYNRNL 586

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 587 QAVPPTGSISYINNSTSSIHPIVAKIEIRK------------------------EGKIGR 622

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSG 882
           + Y          + ++  + +  A+EI P  +I++ +   + +DQ  SL L + D  + 
Sbjct: 623 VYYPA------PYMTNENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATT 676

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + ++     AW  G+KT YY+R R A  +  + ++G 
Sbjct: 677 RDVNKAQIYAWRKGIKTLYYIRLRQAA-LTGTEVEGC 712


>gi|119872039|ref|YP_930046.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
 gi|119673447|gb|ABL87703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
          Length = 844

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/849 (23%), Positives = 355/849 (41%), Gaps = 92/849 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G L  F+ ++L + + +A S         V  E   N+   ++  +L   +    
Sbjct: 4   VVKLSGLLEPFSLEKLRLSIRQAASE----VGVEVDGEVEININRDVNSWELADLVQLEL 59

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                  P  A+V    LL ++ +EV    + K +          Y +     + +    
Sbjct: 60  LKRAIDRPELAEVAKSHLLGRIYKEVFGKDFLKHKSGYLERALARYRQLAEAGLLKEESL 119

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRV 324
           RLL            A + + + D +  Y  L++  +  Y L     R+ E P     RV
Sbjct: 120 RLLE-----------AFEPRPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRV 168

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY--- 381
           A  +A       + A  +Y+ ++S   + ++P  FN+ T+    +SCF   V D L    
Sbjct: 169 ATAVAR----DVETARRYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLS 224

Query: 382 -----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
                 I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ +    
Sbjct: 225 HPGRFCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVE 284

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--- 493
            + QGGKR+GA    L  WH DV +F+  +     D     + N + ++ D FM++    
Sbjct: 285 VIKQGGKRRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGL 343

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  + L +P     L     K  E      E +    +  V   + A  L+R++    
Sbjct: 344 DKDPKYPLVNPRIY--LERTGRKPVE------ETRVSPPQEAVAGWVDARELFREIAEGA 395

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +++G P + +KD  N  +P           +   +  + N C+E   N       VCNL 
Sbjct: 396 WDSGDPGVIYKDNLNASNPLLGEEIEVAGHRFRYIWRAVNPCSETHQNPFE----VCNLT 451

Query: 604 SINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            INL+                  D++ LA   R   R LD+ ID +   IE   + N   
Sbjct: 452 HINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRAT 511

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA+ERG +  F+ 
Sbjct: 512 RKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWIYVNALDESAELARERGPFKFFEK 571

Query: 714 SLWDQGVFPI----DSI------------GLLAEVRDELAMNRTSRLPW-----DELKKR 752
           S + +G  P+    D +              L E  D L         W     + L+++
Sbjct: 572 SAYARGEIPVLKFQDYVWGRWERVKGAFPPELREAGDRLREITMRTREWLRPRLEALREK 631

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+RNS  ++IAPT   + + G +  ++P +   ++++   G         V  L+ 
Sbjct: 632 VKG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRA 690

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LW   +   ++   G + +   +P+++K + ATA EI  +W +   +  Q+W+DQ  S
Sbjct: 691 RGLWTPQVRKTVE-ETGMLKDAP-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQGIS 748

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST--LKGVDGKLNAVPVT 929
             + +      + + + +  AW +G+K     R +S +     T   + +  KL    + 
Sbjct: 749 KTINMPANAPKEDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLADTKII 808

Query: 930 DPNSSTHSL 938
               +  S 
Sbjct: 809 VKPIALDSA 817


>gi|315657773|ref|ZP_07910653.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491570|gb|EFU81181.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 733

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/744 (24%), Positives = 308/744 (41%), Gaps = 80/744 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + E +Y  + A+  L            RE     + +           L  E     +EE
Sbjct: 30  DAEHDYHSLNAKLNLYGEDGKIQFDADREAARQYFLQHVNKNTVFFHDL-REKLDYLVEE 88

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
           G       E   +F+ +    +  Y   F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 89  GYYEAETLE-QYNFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 147

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
               VA+ LA  +   E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D
Sbjct: 148 RVCMVALYLARGD---EQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLED 204

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+    
Sbjct: 205 NMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYA 264

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +       
Sbjct: 265 NQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEP 324

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  E Y    D   I+  +KI A   ++ +  + FE+G+
Sbjct: 325 MYLFSPYDVERVYGVPFSDISVT-EKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGY 382

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S               +   CNLGS+N
Sbjct: 383 PYIVFEDTVNRAN--PIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMN 440

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +  F     A +I  A+R L  V D  N   +   ++ N    AIGLG M    
Sbjct: 441 IAKTLESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHG 495

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721
            L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +   
Sbjct: 496 CLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAIERGVTFEGFERSQYASGEYFEK 555

Query: 722 --PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               D     A+VR+      ++  +   W  L   +K  G+ N N  AI PT +I+ I 
Sbjct: 556 YLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYIN 615

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 616 NSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PY 645

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLM 895
           + +     +  A+EI    +I++ +   K +DQ  SL L + D  + + ++     AW  
Sbjct: 646 MTNGNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRK 705

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+K+ YY+R R A  +E + ++G 
Sbjct: 706 GIKSLYYIRLRQAA-LEGTEVQGC 728


>gi|312173338|emb|CBX81593.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           ATCC BAA-2158]
          Length = 716

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/752 (24%), Positives = 311/752 (41%), Gaps = 84/752 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-----HHEMQCL-----YPE 254
           +     E   +Y  + A   +  L  +     ++K Q AT      H +          E
Sbjct: 7   TFLEAAEATADYHALNA---MLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAE 63

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +   F+ V         R F F  +LG    Y  Y L   +G 
Sbjct: 64  RLQFLVAEGYYEAEVL-NAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGK 122

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A+   + + S  F  +TPT  N G +   +L S
Sbjct: 123 RYLESFTERVCMVALTLAKGDQP---LALALADEILSGRFQPATPTFLNCGKQQRGELVS 179

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 180 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 239

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 240 LEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITF 299

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LFSP +V  ++ L   +  I+ + +E  AD    + F  I+    ++ + 
Sbjct: 300 QLAKDNQQMALFSPYDVELIYALPFADISISEKYHEMLADTRIRRTF--INPREFFQTLA 357

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N  +     G ++ SNLC+EI   ++  E              
Sbjct: 358 EIQFESGYPYIMFEDTVNRAN--PVHGRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDI 415

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+  AVR L  V D +  H++   ++ N    AIG
Sbjct: 416 SCNLGSLNIA-----HAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +
Sbjct: 471 LGQMNLHGYLAREGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRY 530

Query: 717 DQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +G   + R         +  +   ++  W  LK+ V   G+ N N  AI P
Sbjct: 531 ASGEYFTQYVGQRWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 591 TGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN-------------------- 630

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                     +D +  +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++ 
Sbjct: 631 ----------NDNQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINR 680

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    ++ + ++G 
Sbjct: 681 AQIYAWKKGIKTLYYIRLRQMA-LQGTEVEGC 711


>gi|315605372|ref|ZP_07880415.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312941|gb|EFU61015.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 718

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/750 (24%), Positives = 314/750 (41%), Gaps = 80/750 (10%)

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   + +   L + +        R    +         +        H+++    E  
Sbjct: 17  ELDYHALNAQLNLYDADGRIQFDADRAAARQ-----YFLQHVNQNTVFFHDLE----EKL 67

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI 314
              ++EG   + + +     D+  L     Y   F F  +LG    Y  Y L   +G R 
Sbjct: 68  KYLVDEGYYEKHVLDQYDFADIKELYKQ-AYAHKFRFPTFLGAFKYYTSYTLKTFDGKRY 126

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCF 372
            E  +     V++ LA  + E    A +F + + +  F  +TPT  N+G     +L SCF
Sbjct: 127 LERFEDRVAMVSLYLARGDIE---LARQFVDEIMTGRFQPATPTFLNAGKAARGELVSCF 183

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  
Sbjct: 184 LLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPVMKLLE 243

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 244 DSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGVVIPDITFEL 303

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +N    LFSP +V  ++ +   E  +  E Y    D G I   RKI+A   ++ +  +
Sbjct: 304 ARKNEDMYLFSPYDVERVYGVPFSEISVT-EKYHEMVDDGRIHK-RKINARRFFQTIAEI 361

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVC 600
            FE+G+P+I F+D  N  +     G +  SNLC+EI   S +             +   C
Sbjct: 362 QFESGYPYIVFEDTVNAAN--PIKGRITMSNLCSEILQVSEASTYNDDLSYAHVGKDISC 419

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+         D    + TI TA+R L  V D++    +    + N    AIGLG
Sbjct: 420 NLGSLNIA-----KTMDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNAMSHAIGLG 474

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ 718
            M     L   H+ Y S EA++  +     + + AI AS  +A+ER   +  F+ S +  
Sbjct: 475 QMNLHGYLAREHVYYGSEEALDFTNIYFMTVLYEAIKASCTIARERGERFEGFEDSTYAS 534

Query: 719 GVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G F    I    E   +         +++  ++  W+ L   V   GM N N  A+ PT 
Sbjct: 535 GEFFRKYIDEAWEPTTDKCRELLAASSIHVPTQQDWEALAADVARYGMYNQNLQAVPPTG 594

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + SI P    + ++                         E  I  + Y    
Sbjct: 595 SISYINNSTSSIHPIVSRVEIRK------------------------EGKIGRVYYPA-- 628

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + ++  + +  A+EI P  +I+  +   + +DQ  SL L+  D  + + L+  Y
Sbjct: 629 ----PYMSNENLQYYQDAYEIGPEKIIDIYAVATQHVDQGLSLTLFYPDTVTTRDLNKSY 684

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R    +E + ++G 
Sbjct: 685 IYAWRKGIKTLYYMRLRQMA-LEGTEVEGC 713


>gi|125972577|ref|YP_001036487.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           thermocellum ATCC 27405]
 gi|256005139|ref|ZP_05430108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281416768|ref|ZP_06247788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|125712802|gb|ABN51294.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum ATCC 27405]
 gi|255990886|gb|EEU00999.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281408170|gb|EFB38428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|316941185|gb|ADU75219.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 1313]
          Length = 794

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/673 (26%), Positives = 290/673 (43%), Gaps = 86/673 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
                  +++L  RY     NG+ +E P+  F RVA  +A  + E            EFY
Sbjct: 1   MNLTENAIKVLKKRYLAKDENGNLLEDPEGMFRRVARTVASADKEYVSEEELKSIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  
Sbjct: 61  DMMVNLDFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIVEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +KN  D      + N +  I + FM  V  N  + L  P                   
Sbjct: 181 TCKKNNAD----ITNFNISVGITEEFMNAVENNEYYNLVEPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       +  K +A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 222 ------------IVGKQNAREIFDLIVDMAWNNGEPGIIFLDRLNKDNVTPELGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + D+ KL +T+  AV  LDNVID+N
Sbjct: 270 PCGEQPLLPYE----ACNLGSINLSNMLKYVDGKPEVDFAKLRTTVWKAVHFLDNVIDVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +  K     R IGLG+MG+   L  L+IPY S  ++++A++ M FI   +  AS+
Sbjct: 326 KYPLPEIDKMTRGTRKIGLGVMGWADMLCKLNIPYNSQSSIDLAEKIMHFIQDESRKASM 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+++G +  +  S++                                       I +R
Sbjct: 386 ELAEKKGVFPYYDKSIYKN-----------------------------------LGIRVR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDE 818
           N+    IAPT T++ I GVS  I+P +   Y+++ M  D    VN       K+   + +
Sbjct: 411 NATTTTIAPTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELVEVNPVFKQVAKEEGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-L 877
            ++  +    GSI   + IP+ ++ +  TA +I P W +   +  QK+ D A S  +   
Sbjct: 471 ELMRRI-AKKGSIRGFDEIPEWIQDVFVTAHDISPDWHVRMQAAFQKYTDNAVSKTVNLR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLR--SRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +E + K +   +  A+    K     R  SR    +    +KG +  ++      P    
Sbjct: 530 NEATRKDVADAFWLAYKTNCKGITIYRDGSRDLQVLNIGKVKGKEESVSKAREEGPAKPK 589

Query: 936 HSLGIPSSCTSDT 948
             +   S      
Sbjct: 590 EQIKPVSGIAPRP 602


>gi|296140661|ref|YP_003647904.1| ribonucleoside-diphosphate reductase, subunit alpha [Tsukamurella
           paurometabola DSM 20162]
 gi|296028795|gb|ADG79565.1| ribonucleoside-diphosphate reductase, alpha subunit [Tsukamurella
           paurometabola DSM 20162]
          Length = 727

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/755 (24%), Positives = 311/755 (41%), Gaps = 88/755 (11%)

Query: 196 SDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           S+L+   + +   L +++     +  +  AR              +        H +   
Sbjct: 25  SELDFHALNAMLNLYDRDGNIQFDKDREAARQ---------YFLQHVNQNTVFFHNL--- 72

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI- 309
             E     +EE      + +       V    D  Y + F F  +LG    Y  Y L   
Sbjct: 73  -DEKLDYLVEENYYEPEVLDKYSRA-FVKNLFDAAYAKKFRFPTFLGAFKYYTSYTLKTF 130

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQ 367
           +G R  E  +     VA+ LA  +   EK A    + + +  F  +TPT  NSG  +  +
Sbjct: 131 DGKRYLERFEDRVCMVALTLADGD---EKLATSLVDEIIAGRFQPATPTFLNSGKKQRGE 187

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 188 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPI 247

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 248 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 307

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +    N    LFSP +V  ++ +   +  +  E Y    D   I+  + I+A   ++
Sbjct: 308 ITFELAKNNDDMYLFSPYDVERVYGVPFADVNVT-EKYHEMVDDSRIRKTK-INAREFFQ 365

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+              
Sbjct: 366 TLAELQFESGYPYIMYEDTVNRAN--PIAGKITHSNLCSEILQVSTPSTYNDDLSYAEIG 423

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
           +   CNLGS+N+         D     +TI TA+R L  V D     ++   +  N+   
Sbjct: 424 KDISCNLGSLNIA-----KTMDSPDFGATIETAIRGLTAVSDQTAITSVPSIEHGNNLSH 478

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L    + Y S E V+  +     + FHAI AS  +A+ER  ++  F+ 
Sbjct: 479 AIGLGQMNLHGYLARERVFYGSEEGVDFTNIYFYTVLFHAIRASNAIARERGQSFGGFED 538

Query: 714 SLWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F    I    +        +  +  +   ++  W  LK  V+  G+ N N  A
Sbjct: 539 SKYASGEFFDKYIDQEWKPATDKVIGLFADSEIRIPTQDDWRALKADVQQYGLYNQNLQA 598

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 599 VPPTGSISYINHSTSSIHPVAAKIEIRK------------------------EGKIGRVY 634

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + 
Sbjct: 635 YPA------PYMDNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 688

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 689 VNRAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 722


>gi|121602719|ref|YP_988675.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           bacilliformis KC583]
 gi|120614896|gb|ABM45497.1| ribonucleoside-diphosphate reductase, alpha subunit [Bartonella
           bacilliformis KC583]
          Length = 716

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/695 (26%), Positives = 302/695 (43%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     IEEG   + L   + DF  +       Y   F F  +LG    Y  Y L   +
Sbjct: 62  KEKINYLIEEGYYEKAL-FELYDFSFIKRLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFD 120

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G+R  E  +     VA+ LA    +  +  V   + + +  F  +TPT  N+G  +  +L
Sbjct: 121 GTRYLERYEDRVCLVALYLAQGNKDFAESCV---DEIMTGRFQPATPTFLNAGKKQRGEL 177

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +
Sbjct: 178 VSCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVM 237

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+
Sbjct: 238 KLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDI 297

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWR 547
             +    N    LFSP    D+  + GK F +I+   + R          +KISA   ++
Sbjct: 298 TFELARNNEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNPKIRKKKISARVFFQ 354

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------- 596
            +  + FE+G+P+I F+D  N  +     G ++ SNLC+EI   + + E           
Sbjct: 355 TLAEIQFESGYPYILFEDTANRAN--PVAGRINMSNLCSEILQINEASELETDLGYRTVG 412

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654
               CNLGS+N+         D      T+ TAVR L  V D+ N   +    K N    
Sbjct: 413 SDISCNLGSMNIA-----KAMDSSDFGRTVETAVRALTAVSDMSNIACVPSIAKGNAESH 467

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKG 713
           AIGLG M     L    I Y SPEA++  +     +++HA+ AS  +A+E +  ++ F+ 
Sbjct: 468 AIGLGQMNLHGFLAREKIYYGSPEAIDFTNIYFYTVTYHALRASNLIARERQEKFAGFEK 527

Query: 714 SLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F    I         L+ E+     +   ++  W +LK+ +   G+ N N  A
Sbjct: 528 SAYADGCFFEKYIKREWKPQFLLVQEIFARNNILIPTQGDWKKLKELIAKYGLYNRNLQA 587

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 588 VPPTGSISYINHATSSIHPIASKIEIRK------------------------EGKIGRVY 623

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKK 884
           Y    + N           +  A+EI P  +I++ +   + +DQ  SL L + D  + + 
Sbjct: 624 YPAPYMDNTNL------NFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRD 677

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+K+ YY+R R    +  + ++G 
Sbjct: 678 INRAQIYAWKKGIKSIYYIRLRQKA-LSGTEVEGC 711


>gi|156932795|ref|YP_001436711.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531049|gb|ABU75875.1| hypothetical protein ESA_00591 [Cronobacter sakazakii ATCC BAA-894]
          Length = 706

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/749 (24%), Positives = 314/749 (41%), Gaps = 86/749 (11%)

Query: 209 LIEKEPNYAKVTARFLLEK------LRRE-----VLTTVYKKPQKATHHEMQCLYPEYFC 257
           +++  P+Y  + A   L          ++        T +  P+  T  +          
Sbjct: 1   MLQTPPDYHALNAMLNLYDADGRIQFEKDREAVAAFMTAHVAPRSVTFPDTHAR----LA 56

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             + EG     +     D   V    D  +   F F  +LG    Y  Y L   +G R  
Sbjct: 57  YLVSEGYYDENVL-RRYDASFVAGLFDEAHRYGFTFKTFLGAWKFYTSYTLKTFDGKRYL 115

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E        VA+ LA  +   E  A +  + + S  F  +TPT  N G  +  +L SCFL
Sbjct: 116 EHFPDRACMVALTLACGD---ETLARQILDEILSGRFQPATPTFLNCGKKQRGELVSCFL 172

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 173 LRIEDNMESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLED 232

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 233 AFSYANQLGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 292

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             NA   LFSP +V  ++     +  ++ E Y +  +  E    R ISA  L++++  + 
Sbjct: 293 KANAQMALFSPYDVERIYGKPFGDISVS-EMYSQLVED-ERIRKRYISARELFQRLAEIQ 350

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601
           FE+G+P+I F+D  N  +     G ++ SNLC+EI               +++     CN
Sbjct: 351 FESGYPYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCN 408

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+      +  D      T+  AVR L  V D++   ++   +  N    AIGLG 
Sbjct: 409 LGSLNIA-----HTMDSPDFGRTVEVAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 463

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPE ++  +     +++HA++ S++LA+ER   +  F+ S +  G
Sbjct: 464 MNLHGYLAREGIAYGSPEGLDFTNLYFYTVTWHALNTSMKLARERGERFEGFEASRYASG 523

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +          +AE+     +   +   W  L+  V   G+ N N  A+ PT +
Sbjct: 524 EYFDKYLSQIWTPRTARVAELFARAGITLPTPEMWRALRDDVMRHGLYNRNLQAVPPTGS 583

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 584 ISYINHATSSIHPIVSKIEIRK------------------------EGKIGRVYYPA--- 616

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYR 890
                + ++   ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++    
Sbjct: 617 ---PFMTNENLSLYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 673

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 674 YAWKKGIKTLYYIRLRQLA-LEGTEIEGC 701


>gi|305680926|ref|ZP_07403733.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659131|gb|EFM48631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
          Length = 719

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 189/717 (26%), Positives = 307/717 (42%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       +  +  DFD +       Y  
Sbjct: 43  REAANQFFLQHVNRNTVFFHDL-EEKMEYLVENKYYDPEVL-ARYDFDFIKDLFKQAYAH 100

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G+R  E  +     VA+GLA  +TE    A    + +
Sbjct: 101 KFRFRTFLGAYKYYTSYTLKTFDGTRYLERFEDRVCMVALGLADGDTE---LARHLVDEI 157

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 158 MTGRFQPATPTFLNMGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 217

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 218 NLREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILSFLDT 277

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +    N+   LFSP +V  ++     +  I  E+Y
Sbjct: 278 KRENADEKVRIKTLSLGVVIPDITFELARNNSDMYLFSPYDVQRVYGKAFADISIT-EHY 336

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N  +     G V+ SNLC
Sbjct: 337 QEMVEDPRIRK-KKINARVFFQTLAEIQFESGYPYIMYEDVVNRAN--PIAGRVNMSNLC 393

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   +S              E   CNLGS+N+         D    A T+ TA+R L 
Sbjct: 394 SEILQVNSPSTYHDDLTYDEVGEDISCNLGSLNIAM-----AMDSPDFAQTVETAIRGLT 448

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +    H++   +K N    AIGLG M     L    I Y S EA++  +     + +
Sbjct: 449 AVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHGYLGRERIHYGSEEALDFTNAYFAAVLY 508

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEV---RDELAMNRTSR 743
             + AS +LAQER  ++  F+ S +  G +     P D     A+V    D  ++   + 
Sbjct: 509 QCLRASNKLAQERGQSFGGFEDSEYASGAYFDRFSPADFAPKTAKVQELFDASSITVPTA 568

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD LK  V T G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 569 AEWDALKSDVMTHGLYNRNLQAVPPTGSISYINNSTSSIHPIASRIEIRK---------- 618

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + N         +    A+EI    +I++ +  
Sbjct: 619 --------------EGKIGRVYYPAPHMDNTNL------EYFQDAYEIGYEKVIDTYAAA 658

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 659 TKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEVEGC 714


>gi|256832971|ref|YP_003161698.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686502|gb|ACV09395.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
          Length = 705

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/717 (25%), Positives = 304/717 (42%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  +       +  +A +L+    +F +  L +   Y  
Sbjct: 29  REAARQYFLQHVNQNTVFFHSLEEKLDYLVENDYYEASVLNTYSREF-ITRLFDA-AYAM 86

Query: 290 DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E  A++  + +
Sbjct: 87  KFRFETFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLADGD---ETLALQLVDEI 143

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  NSG  +  +  SCFL  + D++  I   +     L+K  GG+    +
Sbjct: 144 ISGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIARGVNSALQLSKRGGGVALLLS 203

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD 
Sbjct: 204 NLREFGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDT 263

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  ++ E Y
Sbjct: 264 KRENADEKVRIKTLSIGVVIPDITFELAKKNEDMYLFSPYDVERIYGKPFADVNVS-ELY 322

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               D G I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G +  SNLC
Sbjct: 323 HEMVDDGRIRKTK-IKARDFFQTIAELQFESGYPYVMFEDTVNKSN--PIKGKITHSNLC 379

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+                  CNLGS+N+         D   L +T+ TA+R L 
Sbjct: 380 SEILQVSTPSTYNDDLSYKEIGRDISCNLGSLNIA-----KAMDGGNLGATVDTAIRALT 434

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D     ++   +  N    AIGLG M     L   HI Y S E ++        +++
Sbjct: 435 AVSDQTSIDSVPSIRHGNELGHAIGLGQMNLHGFLAREHIHYGSEEGIDFTSIYFYAVAY 494

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE--------VRDELAMNRTSR 743
           HAI AS +LA ER  A+  F+ S +  G +       + E        + ++  +   ++
Sbjct: 495 HAIKASNQLAIERGRAFGGFEDSTYASGEYFDKYTNRVWEPTTQRVKDLFEKFGIAIPTQ 554

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W ELKK V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 555 DDWRELKKSVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPIVSKIEIRK---------- 604

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + ++  + +  A+EI    ++++ +  
Sbjct: 605 --------------EGKIGRVYYPA------PYMTNENLEYYQDAYEIGYEKIVDTYAAA 644

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 645 TEHVDQGLSLTLFFKDTATTRDVNRAQIYAWRKGIKTLYYIRLRQLA-LTGTEVEGC 700


>gi|260579707|ref|ZP_05847566.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602137|gb|EEW15455.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 720

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/742 (24%), Positives = 316/742 (42%), Gaps = 84/742 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT------HHEMQCLY----PEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K ++A       H     +Y     E     ++   
Sbjct: 21  DYHALNA---MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEY 77

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFF 321
               + +   +F  V       Y + F F+ +LG    Y  Y L     R  +E  +   
Sbjct: 78  YDPEVLD-QYEFSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRV 136

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+GLA  +TE    A    + +    F  +TPT  N G  +  +  SCFL  + D++
Sbjct: 137 CMVALGLAAGDTE---LASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNM 193

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + VR  GA I     +S GVIP +K+  D     NQ
Sbjct: 194 ESIGRSINSALQLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQ 253

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 254 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMY 313

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  +  E+YE   +   I+  + I+A A ++ +  + FE+G+P+
Sbjct: 314 LFSPYDVERVYGKPFADVSVT-EHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPY 371

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+  E               CNLGS+N+ 
Sbjct: 372 IMFEDTVNKAN--PIEGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA 429

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D +  + TI TA+R L  V D     ++   ++ N    AIGLG M     L
Sbjct: 430 -----KAMDSEDFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFL 484

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS- 725
              HI Y S EA++  +     + + A+ AS ++AQER   + +F+ S +  G F     
Sbjct: 485 GREHIHYGSEEALDFTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYD 544

Query: 726 -------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + ++    ++   +   W +LK+ V+  G+ N N  AI PT +I+ I   
Sbjct: 545 PAEFAPKTERVRQIFGNSSIQVPTAQDWQQLKEAVQAHGLYNRNLQAIPPTGSISYINNS 604

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 605 TSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PYMT 634

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           ++  + +  A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+
Sbjct: 635 NENLEYYEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGI 694

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R  T++  + ++G 
Sbjct: 695 KTIYYIRLRQ-TALTGTEVEGC 715


>gi|188584791|ref|YP_001916336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349478|gb|ACB83748.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 752

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/639 (28%), Positives = 292/639 (45%), Gaps = 82/639 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVE-------F 342
                    +L  RY         E P+    RVA  +A  E +  +K   E       F
Sbjct: 1   MELTKNAKMVLEKRYLKTNEKGETENPEDMLKRVADNIAQVEKDVYQKDKQEVSKVSQNF 60

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           ++L+ + +FM ++PTL N+G    QL++CF+  + D +  IF A++  A++ K  GG G 
Sbjct: 61  FDLMDNQYFMPNSPTLMNAGRELQQLAACFVLPIEDSMESIFEAIKNAALIHKSGGGTGF 120

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R     +  T G + G + F+KV N    AV QGG R+GA    L   H D++EF
Sbjct: 121 SFSNLRPKNDIVLSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRVDHPDIQEF 180

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  ++    D    ++ N +  I + FM+ V Q+  ++L +P                  
Sbjct: 181 ITCKR----DSDEINNFNISVGITEEFMEAVKQDGEYSLKNPK----------------- 219

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       +  + + A  ++ K++ M +  G P I F D  N  +P  H+G + S+
Sbjct: 220 ----------NGQAVKTLRAREVFDKIVEMAWGNGEPGIVFIDKMNENNPTPHIGEIEST 269

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C E  L         CNLGS+NL     N   DY  L  T+ TAV  LDNVID N + 
Sbjct: 270 NPCGEQPLLPFES----CNLGSVNLSKMVNNGAVDYQLLKETVHTAVHFLDNVIDANRYP 325

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + +K++  +R IGLG+MGF   L  L IPY S EA+++A++ M +I   + + S ELA
Sbjct: 326 LPEIEKTSKENRKIGLGVMGFGDMLFKLRIPYNSQEALDLAEKVMGYIDQESKAKSQELA 385

Query: 703 QERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +ERGA+ +FKGS++DQ G  PI                                   RN+
Sbjct: 386 KERGAFPNFKGSIYDQKGEEPI-----------------------------------RNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAM 820
               IAPT TI+ +CG S  I+P +   + ++ +  D    VN       ++   +   +
Sbjct: 411 TTTTIAPTGTISILCGTSSGIEPLFALAFTRNVLDNDKLVEVNPVFKEATEEAGCYSSEL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
           +  +    GSI +I+ IPD +KK+  T+ +I P W ++  +  QK  D A S  +   +E
Sbjct: 471 MEKV-ADKGSIQDIDEIPDSIKKVFVTSHDISPEWHLKMQAAFQKATDNAVSKTVNLPNE 529

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              K +  IY  A  +  K     R  S  +    T K 
Sbjct: 530 ADLKDVYEIYNLAHELNCKGVTVYRDGSRDTQVLQTSKA 568


>gi|68535548|ref|YP_250253.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           jeikeium K411]
 gi|68263147|emb|CAI36635.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           jeikeium K411]
          Length = 720

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/742 (25%), Positives = 315/742 (42%), Gaps = 84/742 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT------HHEMQCLY----PEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K ++A       H     +Y     E     ++   
Sbjct: 21  DYHALNA---MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEY 77

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFF 321
               + +   +F  V       Y + F F+ +LG    Y  Y L     R  +E  +   
Sbjct: 78  YDPEVLD-QYEFSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRV 136

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
             VA+GLA  +TE    A    + +    F  +TPT  N G  +  +  SCFL  + D++
Sbjct: 137 CMVALGLAAGDTE---LASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNM 193

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + VR  GA I     +S GVIP +K+  D     NQ
Sbjct: 194 ESIGRSINSALQLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQ 253

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 254 LGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMY 313

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I  E+YE   +   I+  + I+A A ++ +  + FE+G+P+
Sbjct: 314 LFSPYDVERVYGKPFADVSIT-EHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPY 371

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I F+D  N  +     G +  SNLC+EI   S+  E               CNLGS+N+ 
Sbjct: 372 IMFEDTVNKAN--PIEGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIA 429

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D +  + TI TA+R L  V D     ++   ++ N    AIGLG M     L
Sbjct: 430 -----KAMDSEDFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFL 484

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS- 725
              HI Y S EA++  +     + + A+ AS ++AQER   + +F+ S +  G F     
Sbjct: 485 GREHIHYGSEEALDFTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYD 544

Query: 726 -------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + ++    ++   +   W +LK  V+  G+ N N  AI PT +I+ I   
Sbjct: 545 PAEFAPKTERIRQIIGNSSIQVPTAQDWQQLKDDVQAHGLYNRNLQAIPPTGSISYINNS 604

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 605 TSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PYMT 634

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+
Sbjct: 635 NDNLEYYEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGI 694

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R  T++  + ++G 
Sbjct: 695 KTIYYIRLRQ-TALTGTEVEGC 715


>gi|218690803|ref|YP_002399015.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218428367|emb|CAR09296.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ED1a]
          Length = 714

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-ERYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++  H++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|308177565|ref|YP_003916971.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307745028|emb|CBT76000.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 712

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 188/734 (25%), Positives = 308/734 (41%), Gaps = 93/734 (12%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-- 289
            +  +Y    K      +    +YF  ++        +    +D  L YL     YER  
Sbjct: 21  AMLNLYGPDGKIQFEVDRYAARQYFLDHVNNNT----VFFHDLDEKLEYLVKHEYYERET 76

Query: 290 -------------------DFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMG 327
                               F F  +LG    Y  Y L   +G R  E  +     VA+ 
Sbjct: 77  LDQYSMNFIRDLFKHAFGKKFRFETFLGAFKFYTSYTLKTFDGKRYLERYEDRVCMVALH 136

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGA 386
           LA  +   EK A+   + +    F  +TPT  N+G  +  +L SCFL  + D++  I  A
Sbjct: 137 LARGD---EKLALHLVDEIIEGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARA 193

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +  +  L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+G
Sbjct: 194 VNSSLQLSKRGGGVALSLTNLREHGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQG 253

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +
Sbjct: 254 AGAVYLNAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDVTFELARKNEDMYLFSPYD 313

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V  ++ +   E  +  + Y+   D        KISA   ++ +  + FE+G+P+I F+D 
Sbjct: 314 VERVYGVPFSEISVTEKYYDMVDDARI--KKTKISAREFFQTLAEIQFESGYPYIMFEDT 371

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANN 614
            N  +     G +  SNLC+EI   SS+ E               CNLGS+N+       
Sbjct: 372 VNKAN--PIAGRITMSNLCSEILQVSSASEFSDDLSYKTVGKDISCNLGSMNIA-----K 424

Query: 615 QFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             D   LA+++  A+R L  V D++   ++      N    AIGLG M     L   HI 
Sbjct: 425 AMDGKDLATSVDIAIRALSAVSDMSYIASVPSIADGNRKSHAIGLGQMNLHGFLAREHIY 484

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IG 727
           Y S E ++  +     I FHA++AS ++A ER   + +F+ S +  G F         + 
Sbjct: 485 YGSEEGIDFTNIYFYTILFHALTASNKIAMERGETFDNFENSKYASGEFFDKYTDQEWVP 544

Query: 728 LLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               VR+    M+  ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P  
Sbjct: 545 ATERVRELFDGMHIPTQEDWKTLKASVMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVA 604

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + ++                         E  I  + Y          + ++    + 
Sbjct: 605 AKIEIRK------------------------EGKIGRVYYPA------PYMNNENIDFYE 634

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R 
Sbjct: 635 DAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQIYAWRKGIKSLYYIRL 694

Query: 906 RSATSVEKSTLKGV 919
           R    +E + ++G 
Sbjct: 695 RQLA-LEGTEVEGC 707


>gi|331684293|ref|ZP_08384885.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|331077908|gb|EGI49114.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 714

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP    D+  +YGK F ++A   +  +    E    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSP---YDIERVYGKPFADVAISEHYAELVANERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|283786770|ref|YP_003366635.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282950224|emb|CBG89860.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 714

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 191/754 (25%), Positives = 321/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPE 254
           ++  + +  P+Y  + A   +  L  +     ++K ++A           H         
Sbjct: 5   TAERVAQATPDYHALNA---MLNLYDKAGRIQFEKDREAVDAFFAAHVRPHSVTFSSQQA 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +      V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLETLVREGYYDESVL-NRYPRAFVIDLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E  +   + VA+ LA  +   E  A +  + + +  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFEDRVVMVALTLARGD---ETLARQLTDEILAGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNAALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +   +NA   LFSP +V  +   YGK F +IA  +   Q         + I+A   ++++
Sbjct: 298 RLAKENAQMALFSPYDVERI---YGKPFGDIAVSDLYDQLVADARVRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P+I F+D  N  S     G ++ SNLC+EI   +S+               
Sbjct: 355 AEIQFESGYPYIMFEDTVNRAS--PVAGRINMSNLCSEILQVNSASTYDDNLDYAQTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D      T+ TA+R L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPE ++  +     I++HA++ S++LA+ER  A++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTSMKLARERGQAFAGFKQSR 527

Query: 716 WDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       D      +VR   A   +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGDWQPKTEKVRALFARSGITLPTREMWRQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVSKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                            ++  A+EI P  +I++ +   + +DQ  SL L + D  + + +
Sbjct: 631 --------------NLDMYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NRAQIYAWRKGIKTLYYIRLRQLA-LEGTEIEGC 709


>gi|191171419|ref|ZP_03032968.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|190908353|gb|EDV67943.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
          Length = 714

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-ERYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++  H++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|262171414|ref|ZP_06039092.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
 gi|261892490|gb|EEY38476.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
          Length = 722

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/743 (23%), Positives = 317/743 (42%), Gaps = 79/743 (10%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S  DL+   + +   ++++E        +  +    R+       +     HH       
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAV----RQYFLQHVNQNTVFFHH-----LD 68

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     +E+G     +  +    + ++      + + F F  +LG    +  Y L   +G
Sbjct: 69  EKLDYLLEQGYYDAQV-FAPYSREFLHHIWQSAFTQKFRFPSFLGAYKFFTAYALKTRDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
            R  E  +   +  A+ LA  +   E  A++    + S  F  +TPT  N+G +   +L 
Sbjct: 128 KRYLERFEDRVVMTALTLARGD---EAFAMQLMREILSGRFQPATPTFINAGKKSRGELI 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++ +   +  +  E Y+   +  EI+  + I+A  L++ +
Sbjct: 305 FELAKKNKEMYLFSPYDVERVYGVPFADISV-NEKYDEMVENAEIRKTK-INARELFQTI 362

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------T 597
             + FE+G+P++ F+D  N  +     G +  SNLC+EI   S + +             
Sbjct: 363 AEIQFESGYPYLMFEDTVNRAN--PIAGRITMSNLCSEILQVSEASQFNDDLSYQHLGTD 420

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D   L  ++  AVR L  V +++   ++   +K N    AI
Sbjct: 421 ISCNLGSLNIA-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAI 475

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y S E ++  +     I+FH + AS ++A+E +  +  F+ S 
Sbjct: 476 GLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSR 535

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +         ++  + +  A+   ++  W +LK+ V   G+ N N  A+ 
Sbjct: 536 YASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVP 595

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  +  + Y 
Sbjct: 596 PTGSISYINYSTSSIHPITAKIEIRK------------------------EGQVGRVYYP 631

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                    + +D    +  A+EI P  +I++ +   + +DQ  SL L+     + + ++
Sbjct: 632 A------PYMTNDNLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDIN 685

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909
                AW  G+KT YY+R R   
Sbjct: 686 KAQIYAWKKGIKTLYYVRLRQTA 708


>gi|224539246|ref|ZP_03679785.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519128|gb|EEF88233.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 708

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 211/678 (31%), Positives = 333/678 (49%), Gaps = 81/678 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    ++  K++ AI K+F +             + I  L  +    +L    
Sbjct: 1   MEITKRNGMAEPYNKEKVAIAIRKSFASTG------QSVTDETILTLVNEVENFILSDTG 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH---SKSDAPIAPKL 145
           +    H+E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H      D  I   L
Sbjct: 55  NR---HVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALNHIVNETGDETITDTL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K +  D     ++                      +L+E + + Y   ++ ++  TALI 
Sbjct: 112 KGIGQDFPRNEYSL--------------------TLLAEKFSSFYKPEMTPNERLTALIK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P++  + AR L  +L +++          + + +++ L         +EG
Sbjct: 152 AAVELTTQEAPDWEFIAARLLNFQLSKKLTEQAEFAGVLSFYEKLRYL--------TDEG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
           +    +  S    ++  +A  +  ERD  F Y GL +L  RY +   +   IE  Q  ++
Sbjct: 204 LYGSYILASYSPEEIEEVAGFICPERDKLFNYSGLDLLVKRYLIRTRSHEPIESVQEMYL 263

Query: 323 RVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            +A+ LA+ E     +   +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 264 GIALHLAMPERHNRLQWVRKFYDLLSKLEVTMATPTLANARKPYHQLSSCFIDTVPDSLE 323

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 324 GIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 383

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--W 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   ++    W
Sbjct: 384 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQSW 443

Query: 500 TLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            LF P+E+       L D YG+E+E  Y +    +        R +S   + R +L    
Sbjct: 444 YLFCPNEIMTIKGYCLEDYYGEEWEKRYLDCVNDS----RLSKRSMSIKDIVRLVLRSAV 499

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------------- 597
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+ ET                 
Sbjct: 500 ETGTPFTFNRDAVNRANPNNHRGIIYCSNLCTEIAQNMSAIETVSTEIRTEDGDMVVVKT 559

Query: 598 ------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                  VCNL S++L         D  ++   + T VR LDNVID+N + I  A+ +NH
Sbjct: 560 VRPGDFVVCNLASLSLGHLPLE---DEQQMKEKVATVVRALDNVIDLNFYPIPFAQITNH 616

Query: 652 THRAIGLGLMGFQSALHL 669
            +R+IGLG+ G+  AL  
Sbjct: 617 HYRSIGLGVSGYHHALAS 634


>gi|15803195|ref|NP_289227.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832792|ref|NP_311565.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|168750918|ref|ZP_02775940.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755420|ref|ZP_02780427.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762470|ref|ZP_02787477.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768766|ref|ZP_02793773.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774793|ref|ZP_02799800.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778657|ref|ZP_02803664.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168800560|ref|ZP_02825567.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938429|ref|ZP_03083811.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808050|ref|ZP_03250387.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813711|ref|ZP_03255040.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819046|ref|ZP_03259366.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398305|ref|YP_002272141.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327374|ref|ZP_03443457.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794622|ref|YP_003079459.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|291284008|ref|YP_003500826.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|12517114|gb|AAG57785.1|AE005496_8 ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363009|dbj|BAB36961.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|187769664|gb|EDU33508.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014971|gb|EDU53093.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003146|gb|EDU72132.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357239|gb|EDU75658.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189361996|gb|EDU80415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367236|gb|EDU85652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189377190|gb|EDU95606.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208727851|gb|EDZ77452.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734988|gb|EDZ83675.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739169|gb|EDZ86851.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159705|gb|ACI37138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762248|gb|ACI79436.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762250|gb|ACI79437.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762252|gb|ACI79438.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762254|gb|ACI79439.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762256|gb|ACI79440.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|217319741|gb|EEC28166.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594022|gb|ACT73383.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|290763881|gb|ADD57842.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|320189006|gb|EFW63665.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320646029|gb|EFX15006.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651329|gb|EFX19760.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320656720|gb|EFX24608.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662263|gb|EFX29660.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667314|gb|EFX34272.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338610|gb|EGD62436.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|326342862|gb|EGD66630.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 714

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 190/754 (25%), Positives = 318/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L +K  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQKTMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +        G + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|227329867|ref|ZP_03833891.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 693

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/724 (25%), Positives = 307/724 (42%), Gaps = 75/724 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     +EEG     + +    FD +   
Sbjct: 13  FEMDKLAARRYFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEADVLD-QYHFDFIKSL 67

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ L+  +T     A
Sbjct: 68  FQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKRYLERYEDRVCLVALTLSKGDT---ALA 124

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  G
Sbjct: 125 SALVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGG 184

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D
Sbjct: 185 GVAFMLSNIRETGAPIKRIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPD 244

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E 
Sbjct: 245 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNQVMYLFSPYDVEQVYGVPLSEI 304

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  E Y    +   I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G 
Sbjct: 305 SVT-EKYHEMVNDKRIRKSQ-IKAREFFQILAEIQFESGYPYMMFEDTVNRAN--PIHGR 360

Query: 579 VHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI               S   +   CNLGS+N+    A+  F       T+ 
Sbjct: 361 INMSNLCSEILQVNEASLYDDDLGYSHIGKDISCNLGSMNIANAMASPDF-----GQTVE 415

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L  V D++   ++   +K N    AIGLG M     L    I Y + EAV+  + 
Sbjct: 416 MAIRALTAVSDMSHISSVPSIEKGNDQSHAIGLGQMNLHGYLAKERIFYGTEEAVDFTNI 475

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDEL 736
               ++FHAI AS  LA ER   +S F+ S +  G +    I    E        + ++ 
Sbjct: 476 YFYTVAFHAIRASNALAIERNQRFSGFELSKYATGEYFDKYIEQRWEPTTARARELFEQS 535

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 536 GIHIPTQQDWAALRESVIAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSRIEIRK--- 592

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D  + +  A+EI P  +
Sbjct: 593 ---------------------EGKIGRVYYPA------PYMNNDNLEYYQDAYEIGPQKI 625

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + 
Sbjct: 626 IDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWTKGIKTIYYIRIRQMA-LEGTE 684

Query: 916 LKGV 919
           ++G 
Sbjct: 685 VQGC 688


>gi|262165763|ref|ZP_06033500.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
 gi|262025479|gb|EEY44147.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
          Length = 722

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/743 (23%), Positives = 317/743 (42%), Gaps = 79/743 (10%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S  DL+   + +   ++++E        +  +    R+       +     HH       
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAV----RQYFLQHVNQNTVFFHH-----LD 68

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     +E+G     +  +    + ++      + + F F  +LG    +  Y L   +G
Sbjct: 69  EKLDYLLEQGYYDAQV-FAPYSREFLHHIWQSAFTQKFRFPSFLGAYKFFTAYALKTRDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
            R  E  +   +  A+ LA  +   E  A++    + S  F  +TPT  N+G +   +L 
Sbjct: 128 KRYLERFEDRVVMTALTLARGD---EAFAMQLMREILSGRFQPATPTFINAGKKSRGELI 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++ +   +  +  E Y+   +  EI+  + I+A  L++ +
Sbjct: 305 FELAKKNKEMYLFSPYDVERVYGVPFADISV-NEKYDEMVENAEIRKTK-INARELFQTI 362

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------T 597
             + FE+G+P++ F+D  N  +     G +  SNLC+EI   S + +             
Sbjct: 363 AEIQFESGYPYLMFEDTVNRAN--PIAGRITMSNLCSEILQVSEASQFNDDLSYQYLGTD 420

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D   L  ++  AVR L  V +++   ++   +K N    AI
Sbjct: 421 ISCNLGSLNIA-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQSHAI 475

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y S E ++  +     I+FH + AS ++A+E +  +  F+ S 
Sbjct: 476 GLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDFERSR 535

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +         ++  + +  A+   ++  W +LK+ V   G+ N N  A+ 
Sbjct: 536 YASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNLQAVP 595

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  +  + Y 
Sbjct: 596 PTGSISYINYSTSSIHPITAKIEIRK------------------------EGQVGRVYYP 631

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                    + +D    +  A+EI P  +I++ +   + +DQ  SL L+     + + ++
Sbjct: 632 A------PYMTNDNLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASATTRDIN 685

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909
                AW  G+KT YY+R R   
Sbjct: 686 KAQIYAWKKGIKTLYYVRLRQTA 708


>gi|50122259|ref|YP_051426.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612785|emb|CAG76235.1| ribonucleoside-diphosphate reductase 2 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 715

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/724 (25%), Positives = 308/724 (42%), Gaps = 75/724 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     +EEG     + +    FD +   
Sbjct: 35  FEMDKLAARRYFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEAEVLD-QYHFDFIKSL 89

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +T     A
Sbjct: 90  FQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKRYLERYEDRVCLVALALAKGDT---TLA 146

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  G
Sbjct: 147 SALVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGG 206

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D
Sbjct: 207 GVAFMLSNIRETGAPIKRIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPD 266

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E 
Sbjct: 267 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNQVMYLFSPYDVEQVYGVPLSEI 326

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  E Y    +   I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G 
Sbjct: 327 SVT-EKYHEMVNDKRIRKSQ-IKARDFFQILAEIQFESGYPYMMFEDTVNRAN--PIHGR 382

Query: 579 VHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI   + +             +   CNLGS+N+    A+  F       T+ 
Sbjct: 383 INMSNLCSEILQVNDASLYDDDLGYRHIGKDISCNLGSMNIANAMASPDF-----GQTVE 437

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L  V D++   ++   +K N    AIGLG M     L    I Y + EAV+  + 
Sbjct: 438 MAIRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLAKERIFYGTEEAVDFTNI 497

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDEL 736
               ++FHAI AS  LA ER   +S F+ S +  G +    I    E        + ++ 
Sbjct: 498 YFYTVAFHAIRASNALAIERNQRFSGFELSKYATGEYFDKYIEQQWEPITARARELFEQA 557

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 558 GIHIPNQQDWAALRESVIAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSRIEIRK--- 614

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D  + +  A+EI P  +
Sbjct: 615 ---------------------EGKIGRVYYPA------PYMNNDNLEYYQDAYEIGPQKI 647

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + 
Sbjct: 648 IDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWTKGIKTIYYIRIRQMA-LEGTE 706

Query: 916 LKGV 919
           ++G 
Sbjct: 707 VQGC 710


>gi|300718017|ref|YP_003742820.1| ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
 gi|299063853|emb|CAX60973.1| Ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
          Length = 702

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/740 (24%), Positives = 306/740 (41%), Gaps = 80/740 (10%)

Query: 215 NYAKVTARFLLE----KLR----REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           +Y  + A   L      ++    +E     Y +       +   +  E     + EG   
Sbjct: 3   DYHSLNAMLNLYDADGNIQFEKDKEATRQYYLQHVLPNTVKFDSV-GERLQYLVSEGYYE 61

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMR 323
             +  +   F+ V    +  Y+R F F  +LG    Y  Y L   +G R  E        
Sbjct: 62  ADVL-NAYPFEFVSSLFEQAYQRRFRFQTFLGAWKFYTSYTLKTFDGKRYLEGFTERVCM 120

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           VA+ LA         A+     + S  F  +TPT  N G +   +L SCFL  + D++  
Sbjct: 121 VALTLA---KGDRSLALSLMEEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMES 177

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G
Sbjct: 178 IGRSVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLG 237

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LF
Sbjct: 238 ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKTNQQMALF 297

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V  ++ L   +  I+ +  E  AD    + F  I+    ++ +  + FE+G+P+I 
Sbjct: 298 SPYDVERIYGLPFADISISEKYEEMLADDRITRTF--INPREFFQTLAEIQFESGYPYIM 355

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAH 610
           F+D  N  +     G ++ SNLC+EI   ++  E               CNLGS+N+   
Sbjct: 356 FEDTVNRAN--PIKGRINMSNLCSEILQVNTPTEYNDDLSYRRIGKDISCNLGSLNIA-- 411

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D    + T+  AVR L  V D +  H++   ++ N    AIGLG M     L  
Sbjct: 412 ---HTMDSPDFSRTVEIAVRGLTAVSDQSHIHSVPSIERGNAQSHAIGLGQMNLHGYLAR 468

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-- 726
             I Y S  A++  +     I++HA+  S  +AQER   ++ F+ S +  G +    +  
Sbjct: 469 EGIQYGSEVALDFTNLYFYTITYHALRTSNLMAQERGERFAGFEESRYASGEYFAQYVEQ 528

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   +A +     +    +  W EL++ V   G+ N N  AI PT +I+ I   + 
Sbjct: 529 RWQPRTPEVAALFARAGITLPGQKEWRELREAVMKHGIYNQNLQAIPPTGSISYINHATS 588

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++           +  +N                              +D
Sbjct: 589 SIHPIVSRIEIRKEGKTGRVYYPAPFMN------------------------------ND 618

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            +  +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 619 NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKT 678

Query: 900 TYYLRSRSATSVEKSTLKGV 919
            YY+R R    +  + ++G 
Sbjct: 679 LYYIRLRQMA-LLGTEVEGC 697


>gi|315445212|ref|YP_004078091.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
 gi|315263515|gb|ADU00257.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
          Length = 722

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/694 (25%), Positives = 295/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     IE+    R + +     + V    D  Y + F F  ++G    Y  Y L   +
Sbjct: 68  DEKLDYLIEKNYYEREVLDQYSR-NFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFD 126

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 127 GKRYLERFEDRVVMVALTLASGDT---VLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEP 183

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 184 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 243

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 244 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDI 303

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ L   +  +  + YE   D        KI A   ++ 
Sbjct: 304 TFELAKKNEDMYLFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+              +
Sbjct: 362 LAELQFESGYPYIMYEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 419

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D     ++   ++ N++  A
Sbjct: 420 DISCNLGSLNIA-----KAMDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + E          +    +  W +LK  V+  G+ N N  A+
Sbjct: 535 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRK------------------------EGKIGRVYY 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + ++  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 PA------PYMTNENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDV 684

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 685 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 717


>gi|323188443|gb|EFZ73729.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
          Length = 714

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-EHIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|253689502|ref|YP_003018692.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756080|gb|ACT14156.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 721

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/724 (25%), Positives = 308/724 (42%), Gaps = 75/724 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     +EEG     + +    FD +   
Sbjct: 41  FEMDKLAARRYFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEAEVLD-QYQFDFIKRL 95

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +T     A
Sbjct: 96  FQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKRYLERYEDRVCLVALTLAKGDT---ALA 152

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  G
Sbjct: 153 GALVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGG 212

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D
Sbjct: 213 GVAFMLSNIRETGAPIKRIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPD 272

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E 
Sbjct: 273 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNQVMYLFSPYDVEQVYSVPLSEI 332

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  E Y    +   I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G 
Sbjct: 333 SVT-EKYHEMVNDKRIRKSQ-IKAREFFQILAEIQFESGYPYMMFEDTVNRAN--PIHGR 388

Query: 579 VHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI   + +             +   CNLGS+N+    A+  F       T+ 
Sbjct: 389 INMSNLCSEILQVNDASLYDDDLGYRHIGKDISCNLGSMNIANAMASPDF-----GQTVE 443

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L  V D++   ++   +K N    AIGLG M     L    I Y + EAV+  + 
Sbjct: 444 MAIRALTAVSDMSHIRSVPSIEKGNDESHAIGLGQMNLHGYLAKERIFYGTEEAVDFTNI 503

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDEL 736
               ++FHAI AS  LA ER   +S F+ S +  G +    I    E        + ++ 
Sbjct: 504 YFYTVAFHAIRASNALAIERNQRFSGFEHSKYATGEYFDKYIEQCWEPTTARARELFEQA 563

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 564 DIHIPTQQDWAALRESVIAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSRIEIRK--- 620

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D  + +  A+EI P  +
Sbjct: 621 ---------------------EGKIGRVYYPA------PYMNNDNLEYYQDAYEIGPQKI 653

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + 
Sbjct: 654 IDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWTKGIKTIYYIRIRQMA-LEGTE 712

Query: 916 LKGV 919
           ++G 
Sbjct: 713 VQGC 716


>gi|215432003|ref|ZP_03429922.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289755167|ref|ZP_06514545.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289695754|gb|EFD63183.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
          Length = 693

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/694 (25%), Positives = 291/694 (41%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D    + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTAPTRDV 655

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 656 NQAQDYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 688


>gi|261820461|ref|YP_003258567.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261604474|gb|ACX86960.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 721

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/724 (25%), Positives = 308/724 (42%), Gaps = 75/724 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     +EEG     + +    FD +   
Sbjct: 41  FEMDKLAARRYFLQHVNQNTVFFHNLE----EKLRYLVEEGYYEADVLD-QYSFDFIKSL 95

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +T     A
Sbjct: 96  FQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGKRYLERYEDRVCLVALALAKGDT---ALA 152

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L+K  G
Sbjct: 153 SALVDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRGG 212

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D
Sbjct: 213 GVAFMLSNIRETGAPIKRIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPD 272

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +   E 
Sbjct: 273 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNQVMYLFSPYDVEQVYGMPLSEI 332

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  E Y    +   I+  + I A   ++ +  + FE+G+P++ F+D  N  +     G 
Sbjct: 333 SVT-EKYHEMVNDKRIRKSQ-IKAREFFQILAEIQFESGYPYMMFEDTVNRAN--PIHGR 388

Query: 579 VHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI   + +             +   CNLGS+N+    A+  F       T+ 
Sbjct: 389 INMSNLCSEILQVNDASLYDDDLGYRHIGKDISCNLGSMNIANAMASPDF-----GQTVE 443

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            A+R L  V D++   ++   +K N    AIGLG M     L    I Y + EAV+  + 
Sbjct: 444 MAIRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLAKERIFYGTEEAVDFTNI 503

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDEL 736
               ++FHAI AS  LA ER   +S F+ S +  G +    I    E        + ++ 
Sbjct: 504 YFYTVAFHAIRASNALAIERNQRFSGFELSKYATGEYFDKYIEQQWEPTTTRARELFEQA 563

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 564 GIHIPTQQDWAALRESVIAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSRIEIRK--- 620

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D  + +  A+EI P  +
Sbjct: 621 ---------------------EGKIGRVYYPA------PYMNNDNLEYYQDAYEIGPQKI 653

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + 
Sbjct: 654 IDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWTKGIKTIYYIRIRQMA-LEGTE 712

Query: 916 LKGV 919
           ++G 
Sbjct: 713 VQGC 716


>gi|147668970|ref|YP_001213788.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. BAV1]
 gi|146269918|gb|ABQ16910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 866

 Score =  473 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/655 (27%), Positives = 286/655 (43%), Gaps = 85/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E       +   R  EF+
Sbjct: 125 LKLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFF 184

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 185 NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 244

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 245 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFV 304

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +   G       + N +  I D FM+ V     + L +P                   
Sbjct: 305 HAKDKAGV----LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGE--------------- 345

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 346 ------------VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 393

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          N  DY KL+  I++AVR LDNVID+N
Sbjct: 394 PCGEQPLLPYES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVN 449

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S 
Sbjct: 450 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSS 509

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 510 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 534

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 535 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 594

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L   +G+  +   +P D K +  TA +I P W +   +  QK  D A S  +   
Sbjct: 595 ELIKSLA--EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 652

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             +G+  +  +Y+ A    LK     R  S      ST K  +         +PN
Sbjct: 653 RDAGECDVAEVYKMAHASNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707


>gi|91212036|ref|YP_542022.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|215487996|ref|YP_002330427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218559667|ref|YP_002392580.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|237706703|ref|ZP_04537184.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|312965590|ref|ZP_07779820.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|91073610|gb|ABE08491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli UTI89]
 gi|215266068|emb|CAS10488.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218366436|emb|CAR04188.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli S88]
 gi|226899743|gb|EEH86002.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|294491935|gb|ADE90691.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|307625753|gb|ADN70057.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
 gi|312289739|gb|EFR17629.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|323951103|gb|EGB46979.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957112|gb|EGB52837.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 714

 Score =  473 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|557567|gb|AAA64444.1| ribonucleotide reductase R1 subunit [Mycobacterium tuberculosis
           str. Erdman]
          Length = 723

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/744 (24%), Positives = 304/744 (40%), Gaps = 84/744 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 22  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 78

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 79  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 137

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 138 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 194

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  G  I     +S GVIP +K+  D     
Sbjct: 195 NMESIGRSINSALQLSKRGGGVALLLTNIREHGGAIKNIENQSSGVIPIMKLLEDAFSYA 254

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 255 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 314

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 315 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 372

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 373 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 430

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V    +  ++   ++ N+   AIGLG M    
Sbjct: 431 IA-----KTMDSPDFAQTIEVAIRALTAVRHQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 485

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 486 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 545

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 546 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 605

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + V+                         E  I  + Y          
Sbjct: 606 HSTSSIHPIVSKVEVRK------------------------EGKIGRVYYPA------PY 635

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  
Sbjct: 636 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRK 695

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY+R R    +E + ++G 
Sbjct: 696 GIKTLYYIRLRQMA-LEGTEVEGC 718


>gi|26249070|ref|NP_755110.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|26109477|gb|AAN81680.1|AE016765_82 Ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli CFT073]
          Length = 714

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/754 (25%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVTDERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINYATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|323966927|gb|EGB62355.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251393|gb|EGE63079.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
          Length = 714

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  +        + K ++A    M               +
Sbjct: 5   TAERLTQETTDYHALNA---MLNIYDNAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSS 370
           R  E        VA+ LA  +      A +  + + S  F  +TPT  N G  +  +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGDK---TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQINSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+    ++   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|259907589|ref|YP_002647945.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963211|emb|CAX54695.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|283477431|emb|CAY73347.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 716

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/740 (24%), Positives = 306/740 (41%), Gaps = 80/740 (10%)

Query: 215 NYAKVTARFLLE----KLR----REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           +Y  + A   L      ++    RE     + +       +   +  E     + EG   
Sbjct: 17  DYHALNAMLNLYDDNGHIQFEKDREAARQYFIQHVIPNSVQFNSI-AERLQFLVAEGYYE 75

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMR 323
             +  +   F+ V         R F F  +LG    Y  Y L   +G R  E        
Sbjct: 76  ACVL-NAYPFEFVCSLFAQAAARRFRFQTFLGAWKFYTSYTLKTFDGKRYLEGFTERVCM 134

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           VA+ LA  +      A+   + + S  F  +TPT  N G +   +L SCFL  + D++  
Sbjct: 135 VALTLAKGDQP---LALALTDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMES 191

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G
Sbjct: 192 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLG 251

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LF
Sbjct: 252 ARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALF 311

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V  ++ L   +  ++ +  E  AD    + F  I+    ++ +  + FE+G+P+I 
Sbjct: 312 SPYDVERIYALPFADISMSEKYPEMLADTRIRRTF--INPREFFQTLAEIQFESGYPYIM 369

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAH 610
           F+D  N  +P    G ++ SNLC+EI   +S  E               CNLGS+N+   
Sbjct: 370 FEDTVNRANPVP--GRINMSNLCSEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNVA-- 425

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D    A T+  AVR L  V D +  H++   ++ N    AIGLG M     L  
Sbjct: 426 ---HAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +G 
Sbjct: 483 EGIQYGSEAGLDFTNMYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQ 542

Query: 729 LAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
               R            +   S+  W  LK+ V   G+ N N  AI PT +I+ I   + 
Sbjct: 543 RWHPRTAQVAALFANAGIAIPSQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++           +  +N                              +D
Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMN------------------------------ND 632

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            + ++  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 633 NQALYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKT 692

Query: 900 TYYLRSRSATSVEKSTLKGV 919
            YY+R R    ++ + ++G 
Sbjct: 693 LYYIRLRQMA-LQGTEVEGC 711


>gi|261342123|ref|ZP_05969981.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315454|gb|EFC54392.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 693

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/717 (25%), Positives = 307/717 (42%), Gaps = 77/717 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     + +P       +Q    +     ++EG     +        +V L  +  + R 
Sbjct: 21  DAFFAAHVRPNTVAFESIQ----QRLDYLVKEGYYEERVLARYGRDAIVKL-FEHAHARG 75

Query: 291 FAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  +LG    Y  Y L   +G R  E  +   + VA+ LA  +   E  AV+  + + 
Sbjct: 76  FRFQTFLGAWKYYTSYTLKTFDGKRYLETFEDRVVMVALTLAQGD---EALAVQLTDEIL 132

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N+G  +  +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 133 SGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 192

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 193 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTK 252

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    I D+  +   +NA   LFSP ++  L+     +  I+    E
Sbjct: 253 RENADEKIRIKTLSLGVVITDITFQLAKENADMALFSPYDIERLYGKAFGDVAISERYDE 312

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    K +  I+A   ++ +  + FE+G+P+I ++D  N  +     G ++ SNLC+
Sbjct: 313 LVADDRIRKKY--INARDFFQTLAEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCS 368

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               +   +   CNLGS+N+      +  D      T+ TAVR L  
Sbjct: 369 EILQVNAASTYDENLDYADVGKDISCNLGSLNIA-----HTMDSPDFGRTVETAVRGLTA 423

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D++   ++   +  N    AIGLG M     L    I Y SPE ++  +     I++H
Sbjct: 424 VSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWH 483

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRL 744
           A+  S+ LA+ER   ++ F+ S +  G +    +    + + E          +   +R 
Sbjct: 484 ALHTSMMLARERGQRFAGFEQSRYASGEYFNQYLENDWQPKTEKVRQLFARAGVTLPTRA 543

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVN 803
            W +L+  V   G+ N N  A+ P+ +I+ I   + SI P    + ++    +G      
Sbjct: 544 MWQQLRDEVMQHGIYNQNLQAVPPSGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPA 603

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            F+ NE                                  ++  A+EI P  +I++ +  
Sbjct: 604 PFMTNE-------------------------------NLALYQDAYEIGPEKIIDTYAEA 632

Query: 864 QKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K +DQ  SL L + D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 633 TKHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 688


>gi|170765802|ref|ZP_02900613.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170124948|gb|EDS93879.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 714

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDNAGRIQFDKDRQAVDAFMATHVRPNTVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDEGVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLADEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   Y  +    +    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEYYDELVANKHIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+               
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASAYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TA+R L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+    ++   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFAHSSITLPTREMWAQLRDDVMRYGIYNQNIQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|163842201|ref|YP_001626606.1| ribonucleotide-diphosphate reductase subunit alpha [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955677|gb|ABY25192.1| ribonucleoside-diphosphate reductase alpha chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 706

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/719 (24%), Positives = 303/719 (42%), Gaps = 70/719 (9%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
               RE     + +           L  +       +  +   L +  M+F  +    + 
Sbjct: 28  FDADREAAHQYFLQHVNNNTVFFHDLEEKLDYLVKNQYYERETLDQYTMNF--IRELYNR 85

Query: 286 KYERDFAF-EYLGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            Y++ F F  +LG    Y  Y L   +G R +E  +     VA+ LA      E  A++ 
Sbjct: 86  AYKKKFRFETFLGAFKFYTSYTLKTFDGKRFLERYEDRVCMVALHLARG---NEDLALKL 142

Query: 343 YNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            + +    F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  GG+ 
Sbjct: 143 VDEIIDGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVA 202

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              T +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  
Sbjct: 203 FALTNIREVGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDINR 262

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD ++   D++ R   ++    +PD+  +   ++    LFSP +V  ++ +   +  + 
Sbjct: 263 FLDTKRENADEKIRIKTLSLGVVVPDITFELAKRDEDMYLFSPYDVEKVYGIPFSDISVT 322

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            + YE   D        KI A   ++ +  + FE+G+P+I F+D  N  +     G +  
Sbjct: 323 EKYYEMVDDSRI--KKTKIKAREFFQTLAEIQFESGYPYIMFEDTVNRAN--PIEGKIIM 378

Query: 582 SNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI               + + +   CNLGS+N+         D     +TI T++
Sbjct: 379 SNLCSEILQVSKPTVYNDDLSYAETGKDISCNLGSLNIAR-----TMDSPDFGNTIETSI 433

Query: 630 RVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D++   ++    K N   RAIGLG M     L    + Y S E ++  +    
Sbjct: 434 RALSAVSDMSDIRSVPSIAKGNRASRAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFY 493

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRT 741
            + +HA+ AS  LA E    +  F+ S +  G F         +     VR+  A ++  
Sbjct: 494 TVVYHALRASNLLAIETGETFGGFENSKYASGEFFDKYTDQERLPQTERVRELFANVHIP 553

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK  +   G+ N N  A+ PT +I+ I   + SI P    + ++         
Sbjct: 554 TQDDWRSLKASIMEHGIYNQNLQAVPPTGSISYINNSTSSIHPVASKIEIRK-------- 605

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                           E  I  + Y          + +D  + +  A+EI    +I++ +
Sbjct: 606 ----------------EGKIGRVYYPA------PYLTNDNLEFYQDAYEIGYEKIIDTYA 643

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              + +DQ  SL L+  D  S + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 644 AATQHVDQGLSLTLFFKDTASTRDINKAQIYAWRKGIKTVYYIRLRQLA-LEGTEVEGC 701


>gi|301019060|ref|ZP_07183271.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300399413|gb|EFJ82951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
          Length = 701

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDENVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK 335
            V       +   F F  +LG    Y  Y L   +G R    + F  RV M   +     
Sbjct: 71  FVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALMLAQGD 128

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+
Sbjct: 129 ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLS 188

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL  
Sbjct: 189 KRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHA 248

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +Y
Sbjct: 249 HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERVY 305

Query: 515 GKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           GK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 306 GKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|325496275|gb|EGC94134.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAGDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G  +  +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+  AVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+    ++   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|331674196|ref|ZP_08374956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331068290|gb|EGI39685.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFITTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +    D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVL-NRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + I+A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYINARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFRQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|331658786|ref|ZP_08359728.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331053368|gb|EGI25397.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|293406172|ref|ZP_06650098.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298381909|ref|ZP_06991506.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|291426178|gb|EFE99210.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298277049|gb|EFI18565.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
          Length = 706

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/758 (24%), Positives = 319/758 (42%), Gaps = 88/758 (11%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR--EVLTTVYKKPQKATHHEMQC 250
           +++  ++   + +   L +          R   +K R+  +     + +P   T    Q 
Sbjct: 1   MTQETMDYHALNAMLNLYDS-------AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ- 52

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI 309
              +     + EG     +       D V       +   F F  +LG    Y  Y L  
Sbjct: 53  ---QRLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKT 108

Query: 310 -NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HP 366
            +G R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   
Sbjct: 109 FDGKRYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRG 165

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP
Sbjct: 166 ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIP 225

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 226 VMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 285

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVAL 545
           D+      +NA   LFSP +V     +YGK F +IA   +  +    E    + ++A   
Sbjct: 286 DITFHLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVANERIRKKYLNARDF 342

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------- 597
           ++++  + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E         
Sbjct: 343 FQRLAEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYAR 400

Query: 598 ----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652
                 CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N  
Sbjct: 401 TGHDISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAA 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F
Sbjct: 456 SHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGF 515

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           K S +  G +    +          + E+     +   +R  W +L+  V   G+ N N 
Sbjct: 516 KQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNL 575

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++    +G       F+ NE             
Sbjct: 576 QAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------- 622

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPS 881
                                ++  A+EI    +I++ +   + +DQ  SL L+  D  +
Sbjct: 623 ------------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTAT 664

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 665 TRDINKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 701


>gi|293412033|ref|ZP_06654756.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468804|gb|EFF11295.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFITTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|218701170|ref|YP_002408799.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218371156|emb|CAR18987.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI39]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +    D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVL-NRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFHDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|289432245|ref|YP_003462118.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288945965|gb|ADC73662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 866

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/655 (27%), Positives = 285/655 (43%), Gaps = 85/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E       +   R  EF+
Sbjct: 125 LKLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFF 184

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 185 NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 244

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 245 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFV 304

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +   G       + N +  I D FM+ V     + L +P                   
Sbjct: 305 HAKDKAGV----LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGE--------------- 345

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 346 ------------VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 393

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          N  DY KL+  I++AVR LDNVID+N
Sbjct: 394 PCGEQPLLPYES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVN 449

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +  +     R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S 
Sbjct: 450 KFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSS 509

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 510 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 534

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 535 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 594

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L   +G+  +   +P D K +  TA +I P W +   +  QK  D A S  +   
Sbjct: 595 ELIKSLA--EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 652

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             +G+  +  +Y+ A    LK     R  S      ST K  +         +PN
Sbjct: 653 RDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 707


>gi|73748195|ref|YP_307434.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. CBDB1]
 gi|73659911|emb|CAI82518.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 761

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/655 (27%), Positives = 285/655 (43%), Gaps = 85/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E       +   R  EF+
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFF 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFV 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +   G       + N +  I D FM+ V     + L +P                   
Sbjct: 200 HAKDKAGV----LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGE--------------- 240

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 241 ------------VVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          N  DY KL+  I++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPYES----CNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +  +     R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L   +G+  +   +P D K +  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLA--EGAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             +G+  +  +Y+ A    LK     R  S      ST K  +         +PN
Sbjct: 548 RDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPN 602


>gi|312947210|gb|ADR28037.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 714

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYSKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|255514004|gb|EET90268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 762

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/844 (24%), Positives = 354/844 (41%), Gaps = 145/844 (17%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  D + + F+  ++E  V +A   + D                 + E++L      S+
Sbjct: 5   VIKRDDSKVDFDRTKIENAVFKAYKSVYD---------------SNVKEAELRKRAENST 49

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             ++                   +E+  T     +K    E      E      ++ V  
Sbjct: 50  TDIV-------------------KEIEAT----GKKEIRVEEIQDIVEKVLMLKDQTVAK 86

Query: 267 RLLHESMMDFDLVYLANDL-KYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRV 324
             +       ++      L   +         L +L  RY L   +G   E P+  F RV
Sbjct: 87  SYILYRHKKAEIRAFRASLGIPDDGLKLPINTLIVLASRYLLKGPDGKIAESPKQLFTRV 146

Query: 325 AMGLALKET-----EKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           +  +A  E      + E  A  +EFY+ +++F FM ++PTL N+GT+  QLS+CF+  V 
Sbjct: 147 SHYIAAAEKKFGKSDDETNALEMEFYDAITNFKFMPNSPTLMNAGTKLGQLSACFVLPVG 206

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D +  IF A++  A++ +  GG G  ++ +R     +  T G + G + F+KV +     
Sbjct: 207 DSIVEIFDAVKYAAIIHQSGGGTGFSFSRLRPTNDMVKSTGGVASGPVSFMKVFDIATEQ 266

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V QGGKR+GA    L   H  + +F+  ++N G       + N +  I D FMK +  N 
Sbjct: 267 VKQGGKRRGANMGILRVDHPSILDFIVAKENEGT----LRNFNISVAITDEFMKALEANR 322

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            ++L +P                              KV  K++A A+W  ++TM ++TG
Sbjct: 323 DYSLVNP---------------------------RNGKVVGKLNARAVWNLIITMAWKTG 355

Query: 558 HPWITFKDPCN--IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
            P + F D  N    +P   +G V S+N C E  L         CNLGSIN+      N 
Sbjct: 356 DPGLVFLDRINSSYSNPVPTLGPVESTNPCGEQPLYPYDS----CNLGSINMAKMLKKND 411

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D+D+L    R  VR LDNVI+ N + +++ +      R IGLG+MG+   L  L 
Sbjct: 412 GQYDIDWDELKRITRMGVRFLDNVIESNTYPLKEIEDVTKKIRRIGLGIMGWADMLIKLG 471

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S EA+ +A++ M FI+ +A   S ELA+ERG + +FK S+W +  +          
Sbjct: 472 IRYDSNEALMLAEKVMSFITENARKMSEELAEERGPFPAFKDSIWYKLGY---------- 521

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
                                     +RNS    IAPT TI+ I  G SQ I+P +  +Y
Sbjct: 522 ------------------------KPLRNSTVTTIAPTGTISIIAGGASQGIEPIFSVVY 557

Query: 791 VK---SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++    ++  +   VN+       + + + + ++  L     SI ++E IP +++++  T
Sbjct: 558 MRNVHESLGSNLIEVNNEFEAMAIENNFYSDELMKKL-AGRVSIQDVEEIPQEIRRLFVT 616

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A++I P W +   +  QK++D A S  +      + + ++  Y  A+ +G K     R  
Sbjct: 617 AYDIAPEWHVRMQAAFQKYVDNAVSKTINFPSWATPQDIEKAYVLAYKLGCKGITVYRDS 676

Query: 907 SA-----TSVEK------------STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           S       SVE+             ++K    K +  P+T     + + G         +
Sbjct: 677 SKSVQVLQSVEQQKTLTEPSSKTIKSIKEKHAKGSVEPMTVSQIKSSAGGYVMEVQQAQQ 736

Query: 950 CEVC 953
           C  C
Sbjct: 737 CPEC 740



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     FD +KI  A+ KA+ +V      +   ++   +N T   V  +    K  
Sbjct: 5   VIKRDDSKVDFDRTKIENAVFKAYKSVYDSNV-KEAELRKRAENSTTDIVKEIEATGKKE 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM      + + Y+LYR +++++RA ++              + D
Sbjct: 64  --IRVEEIQDIVEKVLM-LKDQTVAKSYILYRHKKAEIRAFRASLG-----------IPD 109

Query: 151 DGTLISFNS 159
           DG  +  N+
Sbjct: 110 DGLKLPINT 118


>gi|310764902|gb|ADP09852.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 716

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/740 (24%), Positives = 304/740 (41%), Gaps = 80/740 (10%)

Query: 215 NYAKVTARFLLE----KLR----REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           +Y  + A   L      ++    RE     + +       +   +  E     + EG   
Sbjct: 17  DYHALNAMLNLYDDNGHIQFEKDREAARQYFIQHVIPNSVQFNSI-AERLQFLVAEGYYE 75

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMR 323
             +  +   F+ V         R F F  +LG    Y  Y L   +G R  E        
Sbjct: 76  ACVL-NAYPFEFVCSLFAQAAARRFRFQTFLGAWKFYTSYTLKTFDGKRYLEGFTERVCM 134

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           VA+ LA  +      A+   + + S  F  +TPT  N G +   +L SCFL  + D++  
Sbjct: 135 VALTLAKGDQP---LALALMDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMES 191

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G
Sbjct: 192 IGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLG 251

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LF
Sbjct: 252 ARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALF 311

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V  ++ L   +  I+ +  E   D    + F  I+    ++ +  + FE+G+P+I 
Sbjct: 312 SPYDVERIYALPFADVSISEKYPEMLDDTRIRRTF--INPREFFQTLAEIQFESGYPYIM 369

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAH 610
           F+D  N  +     G ++ SNLC+EI   +S  E               CNLGS+N+   
Sbjct: 370 FEDTVNRAN--PVHGRINMSNLCSEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNIA-- 425

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D    A T+  AVR L  V D +  H++   ++ N    AIGLG M     L  
Sbjct: 426 ---HAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +G 
Sbjct: 483 EGIQYGSEAGLDFTNMYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFNQYVGQ 542

Query: 729 LAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
               R            +   S+  W  LK+ V   G+ N N  AI PT +I+ I   + 
Sbjct: 543 RWHPRTAQVAALFANAGIAIPSQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++           +  +N                              +D
Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMN------------------------------ND 632

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            + ++  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 633 NQALYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKT 692

Query: 900 TYYLRSRSATSVEKSTLKGV 919
            YY+R R    ++ + ++G 
Sbjct: 693 LYYIRLRQMA-LQGTEVEGC 711


>gi|227876444|ref|ZP_03994556.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269976012|ref|ZP_06183016.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|306817403|ref|ZP_07451148.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307700430|ref|ZP_07637469.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842985|gb|EEJ53182.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269935840|gb|EEZ92370.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|304649844|gb|EFM47124.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307614415|gb|EFN93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
          Length = 733

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 179/742 (24%), Positives = 302/742 (40%), Gaps = 80/742 (10%)

Query: 213 EPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           E +Y  + A+  L         +   E     +             L  E     + EG 
Sbjct: 32  EHDYHSLNAKLNLYGSDGKIQFEADVEAARQFFVNHVNPNTVSFNTL-QEKIDYLVTEGY 90

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
             +        F+ +       Y  +F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 91  YEKE-TIDQYRFEFIKSLFQKAYAHNFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRV 149

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ L   +   E  A +    + +  +  +TPT  N+G +   ++ SCFL  + D++
Sbjct: 150 CMVALYLGRGD---ETLATDIMEEIITGRYQPATPTFLNAGKKARGEMVSCFLVRIEDNM 206

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   L     L+K  GG+    T +R  GA I     +S GV+P +K+  D     NQ
Sbjct: 207 ESIARGLNSALQLSKRGGGVALLLTNLREAGAPIKRIQNQSSGVVPVMKMLEDAFSYANQ 266

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL  +H D+  FLD ++   D++ R   ++    IPD+  +         
Sbjct: 267 LGARQGAGAVYLNAFHPDIMSFLDTKRENADEKIRIKTLSLGVVIPDIAFELAKNKEPMY 326

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++  ++ +   E  +  E Y    D  +I   ++I A   ++ +  + FE+G+P+
Sbjct: 327 LFSPYDIERVYGVPFSEISVT-EKYRELVDNPQIHK-KQIDARKFFQTLAEIQFESGYPY 384

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I ++D  N  +     G +  SNLC+EI   S + E               CNLGS+N+ 
Sbjct: 385 ILYEDTVNRAN--PIDGRIVMSNLCSEILQVSEASELNPDLSYQKVGKDISCNLGSMNIA 442

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D      +IR A+R L  V D  N   +   ++ N    A+GLG M     L
Sbjct: 443 -----KTLDSPDFEQSIRVAIRALTAVSDLTNVECVPTIQRGNAMSHAVGLGAMNLHGCL 497

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPE ++  +      +F+A+ AS ELA ER   +  F+ S +  G +    I
Sbjct: 498 ARHEIFYGSPEGLDFTNMYFYATAFYALKASHELAVERGQRFEGFERSQYATGEYFEKYI 557

Query: 727 GLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               E        +  + ++   +   W  L + ++  GM N N  AI PT +I+ I   
Sbjct: 558 NETWEPKTAKVREIFAQSSVKLPTTEDWRRLAEAIQRDGMYNQNLQAIPPTGSISYINNS 617

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 618 TASIHPVASKIEIRK------------------------EGKIGRVYYPA------PYMT 647

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 648 NDNLEYYQDAYEIGYEKIIDTYAEATQHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGI 707

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           K+ YY+R R A  +E + ++G 
Sbjct: 708 KSLYYIRLRQAA-LEGTEVEGC 728


>gi|254471481|ref|ZP_05084883.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
 gi|211959627|gb|EEA94825.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
          Length = 716

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/749 (24%), Positives = 317/749 (42%), Gaps = 80/749 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+   + +   L + E        R    +         +        H ++    E   
Sbjct: 16  LDYHALNAMLNLYDAEGKIQFDADRQAARQ-----YFLEHVNQNTVFFHSLE----EKLS 66

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             + E      + +   D   V       YER F F  +LG    Y  Y L   +G R  
Sbjct: 67  YLVRENYYEAEVLD-QYDLAFVKAIFVAAYERKFRFPTFLGAFKFYTSYALKTFDGKRYL 125

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +   +  A+ L+  +   E  A+   + + S  F  +TPT  N+G  +  +L SCFL
Sbjct: 126 ERYEDRVVMTALALSRGD---EDLAMRMMDEIISNRFQPATPTFLNAGKKQRGELISCFL 182

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I  ++     L+K  GG+    T +R  GA I G   +S GV P +K+  D
Sbjct: 183 LRLEDNMESIGRSINSALQLSKRGGGVALLLTNLREAGAPIKGVENQSSGVGPVMKLLED 242

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 243 SFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFQLA 302

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            QN    LFSP +V  ++ +   E  +  E Y    D  +I+  +K+ A   ++ +  + 
Sbjct: 303 KQNEEMYLFSPHDVEKVYGIPFSEIAVT-EKYREMVDNPKIRK-KKMRAREFFQLLAEIQ 360

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCN 601
           FE+G+P+I F+D  N  +     G ++ SNLC+EI   + +                 CN
Sbjct: 361 FESGYPYILFEDTANAVN--PVAGRINMSNLCSEILQVNEASTFKDDLSYAHLGSDISCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         D   L ST+ TA+R L  V +++   ++   ++ N    AIGLG 
Sbjct: 419 LGSLNIAR-----AMDGGDLGSTVETAIRALTAVSEMSAIVSVPSVRRGNDESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     + +H + AS  +A+ERG ++  F+ S +  G
Sbjct: 474 MNLHGFLARELIHYGSPEAIDFTNIYFCIVLYHCLRASNAMARERGVSFKGFEDSQYASG 533

Query: 720 VFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    +             + ++  ++  +R  W  LK  V T G+ N N  A+ PT +
Sbjct: 534 AFFDKYVEKDWLPDTERVVALFEKFGIHIPTRAEWVALKDAVMTDGLLNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  I  + Y     
Sbjct: 594 ISYINNSTSSIHPIVSKIEIRK------------------------EGKIGRVYYPA--- 626

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                + +D  + +  A+EI P  LI++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 627 ---PFMNNDNLEYYRDAYEIGPEALIDTYAAATQHVDQGLSLTLFFPDTATTRDVNKAQI 683

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 684 YAWKKGIKTIYYVRLRQMA-LEGTEVQGC 711


>gi|281179682|dbj|BAI56012.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE15]
          Length = 714

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-ERYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|306812444|ref|ZP_07446642.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|305854482|gb|EFM54920.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
          Length = 714

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYSKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|126658753|ref|ZP_01729898.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126620015|gb|EAZ90739.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 728

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/778 (27%), Positives = 348/778 (44%), Gaps = 91/778 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  DG++ + +   +   +  A  G   ++S  + S     +    +   ++  L+ ++
Sbjct: 5   VIKRDGSVANLDLNEIRDAIAYAIEG-YPLNSLELESRVNLQLNQPRTTRFIQETLVNTA 63

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L   K+P +  V  R  +     EV+                 L+ +Y  +       
Sbjct: 64  VQLATPKDPEWLNVAGRLHIWNWTHEVIAKRGYGYGHYDVFSDTNLFSKYTSQL------ 117

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                +     DL    + ++ E D  F++ G  +L  RY    +    E+ Q  F+  A
Sbjct: 118 -----KIYSQRDLQEAVSWIEPELDKVFDHAGATLLTQRYL--SDD---ELIQEVFLVTA 167

Query: 326 MGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA+ E   E+   A  FY  ++      +TP L N        +SCF+ +V D +  I
Sbjct: 168 LVLAIPERMDERMSYARAFYMAIAHRKISLATPILANLRFEGGSGTSCFILSVEDSIESI 227

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  ++  A +++  GG+G + + +R +G+ +      S G++ ++++ NDTA+AVNQGG+
Sbjct: 228 FDNVKNTARISQEGGGVGINLSRIRAVGSWVRSKPNVSGGLMSWIRILNDTAIAVNQGGR 287

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GAV    + WH+D+ EFL++R   GD RR+ +D+     + D FM+RV Q A WTL  
Sbjct: 288 RAGAVTVAADIWHLDIPEFLEMRSEAGDQRRKAYDVFPQVVVTDNFMRRVEQGATWTLVD 347

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P EV      DL +L+G EF+ AYE  E  A  G++ + + ++A  L+  +L    ETG 
Sbjct: 348 PYEVKQVLGIDLPNLWGTEFDDAYEQIEEAASMGDLTLAQTVNARNLFIDILETQVETGL 407

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCNLGSINLLAHFANNQFD 617
           P+I FKD  N  +P +H+G++ S NLC E        + A  CNL S+NL       Q +
Sbjct: 408 PYIAFKDALNRANPNKHIGIIPSVNLCCESFSVVVPGKLAHSCNLASVNLA------QVE 461

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            D+L    + AVR+LDN ID+    I +A+  N   R IG+G++G    L    + Y   
Sbjct: 462 DDELPEICQLAVRLLDNTIDVTTAPIGEARNHNRELRTIGVGVLGLADYLAKRGLRYQD- 520

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
                  E  +  S+  +  SV LA+ERG+Y +   S +  G              + L 
Sbjct: 521 --KREIRELFKEFSYQCLMGSVLLAKERGSYPAINSSEYGMG--------------NILG 564

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            +R+ R  W  L       G+RNS+ MAIAP  + + I G + S+ P Y     +S   G
Sbjct: 565 KSRSQRPEWKALYDLFDFYGIRNSHIMAIAPNTSSSLIQGCTASVLPPYAKFNAESLGKG 624

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           D      FL       D + E                                ID   ++
Sbjct: 625 DVMKAVPFLRE---YGDNYQENQR-----------------------------IDQRVVV 652

Query: 858 ESASRRQKWIDQAQSL----NLYLD--EPS-GKKLDFIY---RQAWLMGLKTTYYLRS 905
           ++ +  QKW+D   S+    NL  D  EP+       IY    +AW  GLK  YY+R+
Sbjct: 653 DAIAEMQKWVDTGISMELVFNLNPDVYEPNKTVDASDIYDTALRAWRRGLKAIYYIRT 710


>gi|120403036|ref|YP_952865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955854|gb|ABM12859.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 722

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 174/694 (25%), Positives = 296/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +++    R + +     + V    D  Y + F F  ++G    Y  Y L   +
Sbjct: 68  DEKLDYLVQKEYYEREVLDQYSR-NFVKELLDRAYAKKFRFPTFVGAFKYYTSYTLKTFD 126

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 127 GKRYLERFEDRVVMVALTLASGDT---TLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEP 183

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 184 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 243

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 244 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 303

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 304 TFELAKKNEDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+  E            
Sbjct: 362 LAELQFESGYPYIMYEDTVNRAN--PIDGKITHSNLCSEILQVSTPSEFNDDLSYKKIGK 419

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 420 DISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYTVLYHALRASNRIAIERGTAFKGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + +          +   ++  W +LK+ V+  G+ N N  A+
Sbjct: 535 KYASGEFFDKYTEQVWEPKTDKVRQLFTDAGIRIPNQDDWKQLKESVQQHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRK------------------------EGKIGRVYY 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + ++  + +  A+EI    +I++ +   + +DQ  SL L+  D  + +++
Sbjct: 631 PA------PYMTNENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTREV 684

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++  
Sbjct: 685 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTQVENC 717


>gi|333001012|gb|EGK20582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333015484|gb|EGK34823.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 714

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 317/753 (42%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A +  +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVNAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    + T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|320095250|ref|ZP_08026947.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977791|gb|EFW09437.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 718

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/750 (25%), Positives = 315/750 (42%), Gaps = 80/750 (10%)

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   + +   L + +        R    +         +        H+++    E  
Sbjct: 17  ELDYHALNAQLNLYDADGRIQFDADRAAARQ-----YFLQHVNQNTVFFHDLE----EKL 67

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI 314
              +EEG   + + +     D+  L     Y   F F  +LG    Y  Y L   +G R 
Sbjct: 68  DYLVEEGYYEKHVLDQYAMEDIKALYKQ-AYAHKFRFPTFLGAFKYYTSYTLKTFDGKRY 126

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCF 372
            E  +   + V+M LA  + +    A  F + + +  F  +TPT  N+G     +L SCF
Sbjct: 127 LERFEDRVVMVSMYLARGDVD---LAASFVDEIMTGRFQPATPTFLNAGKAARGELVSCF 183

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  
Sbjct: 184 LLRVEDNMESIARGINSALQLSKRGGGVALQLTNLREAGAPIKKIQNQSSGVVPVMKLLE 243

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 244 DSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGVVIPDITFEL 303

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +N    LFSP +V  ++ +   E  +  E Y    D G I   +KI+A   ++ +  +
Sbjct: 304 ARKNEDMYLFSPYDVERVYGVPFSEIPVT-EKYHEMVDDGRIHK-KKINARRFFQTLAEI 361

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVC 600
            FE+G+P+I F+D  N  +     G V  SNLC+EI   S +             +   C
Sbjct: 362 QFESGYPYIVFEDTVNRAN--PIKGRVTMSNLCSEILQVSEASTYNEDLSYAHVGKDISC 419

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+         D    + TI TA+R L  V D++    +    + N    AIGLG
Sbjct: 420 NLGSLNIA-----KTMDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNAMSHAIGLG 474

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ 718
            M     L   H+ Y S EA++  +     + F A+ AS  +A+ER   +  F+ S +  
Sbjct: 475 QMNLHGYLAREHVHYGSEEALDFTNIYFMTVLFEAVRASCAIARERGERFEGFEDSAYAS 534

Query: 719 GVFPIDSI-----GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G F    I         + R+ LA   +   +R  W  L   V   GM N N  A+ PT 
Sbjct: 535 GEFFRKYIDEAWEPATDKCRELLAASSIRVPTRDDWRALAADVARYGMYNQNLQAVPPTG 594

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ I   + SI P    + ++                         E  I  + Y    
Sbjct: 595 SISYINNSTSSIHPIVSRVEIRK------------------------EGKIGRVYYPA-- 628

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + ++  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + L+  Y
Sbjct: 629 ----PYMTNENLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTTRDLNKSY 684

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R    +E + ++G 
Sbjct: 685 IYAWRKGIKTLYYMRLRQMA-LEGTEVEGC 713


>gi|227504015|ref|ZP_03934064.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199409|gb|EEI79457.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 720

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/742 (25%), Positives = 308/742 (41%), Gaps = 75/742 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           E++ +Y  + A   L            RE     + +           L  E     +E 
Sbjct: 16  EEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDL-EEKMRYLVEN 74

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
                 L E   DFD +       Y   F F  +LG    Y  Y L     R  + + F 
Sbjct: 75  KYYEPELLE-QYDFDFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFE 132

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL 380
            RV+M            A    + + +  F  +TPT  N+G  +  +L SCFL  + D++
Sbjct: 133 DRVSMTALFLADGDTTVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNM 192

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ
Sbjct: 193 ESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQ 252

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 253 LGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMY 312

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I  E+YE   +   I+  +KI+A   ++ +  + FE+G+P+
Sbjct: 313 LFSPYDVERVYGKAFADISIT-EHYEEMVEDPRIRK-KKINARHFFQTVAELQFESGYPY 370

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +P +  G ++ SNLC+EI   +S                  CNLGS+N+ 
Sbjct: 371 IMFEDTVNKANPVK-TGWINMSNLCSEILQVNSPSVFADDLSYETMGSDISCNLGSLNIA 429

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D      T+ TA+R L  V D    +++   +K N    AIGLG M     L
Sbjct: 430 M-----TMDSPDFGLTVETAIRGLTAVADKTAINSVPSVRKGNDDSHAIGLGQMNLHGYL 484

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS- 725
              HI Y S E ++  +     I + A+ AS ++A+ER   +S F  S +  G F     
Sbjct: 485 GREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGEYFSEFPQSEYASGEFFDRYD 544

Query: 726 -------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+ D  +++  +   W  LK  V   G+ N N  A+ PT +I+ I   
Sbjct: 545 PEEFKPRTARVQELFDASSIHTPTAEDWAALKADVAKHGLYNRNLQAVPPTGSISYINNS 604

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    + ++                         E  I  + Y          + 
Sbjct: 605 TSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PHMD 634

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +D  +    ++EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+
Sbjct: 635 NDNLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINKAQIYAWRKGI 694

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 695 KTLYYIRLRQMA-LEGTEIEGC 715


>gi|218706175|ref|YP_002413694.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|218433272|emb|CAR14172.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli UMN026]
          Length = 714

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 315/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           +   L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TVERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|256830880|ref|YP_003159608.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580056|gb|ACU91192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
          Length = 744

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 175/659 (26%), Positives = 301/659 (45%), Gaps = 84/659 (12%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVE 341
           D +       +L  RY    ++G+ IE  +  F RVA  +A  E        + +  A  
Sbjct: 12  DVSLNSNAELVLKKRYQRKGLDGTPIETAKEMFWRVAASIASMEKNYPSSPFKPKDLART 71

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G
Sbjct: 72  FYSLMTEYDFLPNSPTLMNAGTELGQLAACFVLPVGDSMDEIFDAVKNAALIHKSGGGTG 131

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +T +R   + +  T G + G I FLK+ N     V QGG R+GA    L   H D+ E
Sbjct: 132 FSFTRLRPKDSRVGSTGGVASGPISFLKIFNTATEQVKQGGTRRGANMGILRVDHPDILE 191

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  GD     ++ N +  + + FM+ V  +  + L +P                 
Sbjct: 192 FIRAKEREGD----LNNFNLSVALTEKFMQAVENDEEYPLVAPQS--------------- 232

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V  K+ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 233 ------------QEVIEKLKAREVFELLVRKAWESGDPGIIFIDRINRDNPNPDQGEIES 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           + D+D+L   +  +VR LDNVID
Sbjct: 281 TNPCGEQPLLPYE----ACNLGSINLARFVREKDEGVEIDWDRLREVVHLSVRFLDNVID 336

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            + + +++  ++   +R IGLG+MG+   L+ L +PY S  A+ +A++ M FI   A SA
Sbjct: 337 ASEYPLDRITETVRKNRKIGLGVMGWADLLYQLGLPYDSRRAIVLAEQMMNFIQKEARSA 396

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ERG + S++ S++ +                                       
Sbjct: 397 SKELAKERGPFPSYETSIYKEQNL----------------------------------GP 422

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
            R++    IAPT T++ I G S  ++P +   +V+  M G+  T  NSF V  L  +  +
Sbjct: 423 YRHATTTTIAPTGTLSIIAGCSSGVEPLFALCFVRQVMDGEKLTEANSFFVKALHDQGCY 482

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E +++++    GS+ N++ +P++L+ ++ T+ +I+P W ++  +  QK  D A S  + 
Sbjct: 483 SEKLMAEVI-EKGSVKNMDFLPEELRNVYVTSMDIEPQWHLKMQAAFQKHTDNAVSKTVN 541

Query: 877 -LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
             +  + + +  IY  A+  G K     R    +     T  G   +  +      +  
Sbjct: 542 LPNSATQEDIYQIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGNKEEKKSDECRPMDRP 600


>gi|237785989|ref|YP_002906694.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758901|gb|ACR18151.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 718

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/753 (25%), Positives = 321/753 (42%), Gaps = 80/753 (10%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S   L+   + +   L ++         +   +K R E     + +           L  
Sbjct: 14  STEQLDFHALNAMLNLYDEN-------GKIQFDKDR-EAANQFFLQHVNQNTVFFHDL-E 64

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E F   I+       + E     D+  L     Y   F F  +LG    Y  Y L   +G
Sbjct: 65  EKFDYLIKNNYYNGDVVEKYEFSDIKDL-FKQAYSYKFRFKTFLGAYKYYTSYTLRTFDG 123

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
           +R  E  +     VA+GLA  +      A    + +    F  +TPT  N G  +  +  
Sbjct: 124 NRYLERYEDRVCMVALGLADGDIS---LARRLVDEIIQGRFQPATPTFLNIGKAQRGEPV 180

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 181 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREQGAPIKKIENQSSGVIPVMK 240

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 241 LLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 300

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++     +  I+ E+Y+   +   IK  + I+A   ++ +
Sbjct: 301 FELAKRNDDMYLFSPYDVERVYGKPFSDIGIS-EHYDEMVEDPRIKKSK-INARQFFQTL 358

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------T 597
             + FE+G+P+I F+D  N  +     G ++ SNLC+EI   +S  E             
Sbjct: 359 AEIQFESGYPYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSPSEFNADLTYQHIGDD 416

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+     ++ FD      TI TA+R L  V D     ++   ++ N    AI
Sbjct: 417 ISCNLGSLNIAMVMDSDDFDG-----TIDTAIRGLTAVSDQTSIDSVPSVRQGNEHSHAI 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715
           GLG M     L   HI Y S EA++  +     +    + AS  LA+ERG  ++ F+ S 
Sbjct: 472 GLGQMNLHGYLGREHIYYGSEEALDFTNAYFAAVMVACLKASNRLAKERGVTFTGFEDSD 531

Query: 716 WDQGVF-----PIDSIGLLAEVR---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F     P D      +V+   +E +++ T+   W +L++ ++  G+ N N  AI 
Sbjct: 532 YASGAFFDRYDPKDFAPKTEKVKRIFEESSISVTTPEEWAQLREDIQQYGLYNRNLQAIP 591

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 592 PTGSISYINNSTSSIHPIASRIEIRK------------------------EGKIGRVYYP 627

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D       A+EI    +I++ +   K++DQ  SL L+  D  + + ++
Sbjct: 628 A------PHMNNDNLDYFKDAYEIGYEKVIDTYAVATKYVDQGLSLTLFFKDTATTRDIN 681

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R A  +E + ++G 
Sbjct: 682 RAQIYAWKNGIKTLYYIRLRQAA-LEGTEVEGC 713


>gi|331664232|ref|ZP_08365138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331058163|gb|EGI30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
          Length = 714

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFITTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|300898655|ref|ZP_07116976.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300357683|gb|EFJ73553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
          Length = 701

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/731 (25%), Positives = 310/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDENVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|332999412|gb|EGK18997.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    + T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|298345733|ref|YP_003718420.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
 gi|298235794|gb|ADI66926.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/744 (24%), Positives = 307/744 (41%), Gaps = 80/744 (10%)

Query: 211 EKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + E +Y  + A+  L            RE     + +           L  E     +EE
Sbjct: 11  DAEHDYHSLNAKLNLYGEDGKIQFDADREAARQYFLQHVNKNTVFFHDL-REKLDYLVEE 69

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
           G       +    F  +    +  Y   F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 70  GYYEEDTLK-QYSFKFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 128

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
               VA+ LA  +   E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D
Sbjct: 129 RVCMVALYLARGD---EQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLED 185

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K+  D+    
Sbjct: 186 NMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYA 245

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+  +       
Sbjct: 246 NQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEP 305

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  E Y    D   I+  +KI A   ++ +  + FE+G+
Sbjct: 306 MYLFSPYDVERVYGVPFSDISVT-EKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGY 363

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S               +   CNLGS+N
Sbjct: 364 PYIVFEDTVNRAN--PIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMN 421

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +     +  F     A +I  A+R L  V D  N   +   ++ N    AIGLG M    
Sbjct: 422 IAKALESPDF-----AKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHG 476

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF--- 721
            L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +   
Sbjct: 477 CLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEK 536

Query: 722 --PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               D     A+VR+      ++  +   W  L   +K  G+ N N  AI PT +I+ I 
Sbjct: 537 YLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYIN 596

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 597 NSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PY 626

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLM 895
           + +D    +  A+EI    +I++ +   K +DQ  SL L + D  + + ++     AW  
Sbjct: 627 MTNDNLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRK 686

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+K+ YY+R R A  +E + ++G 
Sbjct: 687 GIKSLYYIRLRQAA-LEGTEVQGC 709


>gi|74313246|ref|YP_311665.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|187730558|ref|YP_001881573.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|73856723|gb|AAZ89430.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Shigella
           sonnei Ss046]
 gi|187427550|gb|ACD06824.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
 gi|320173469|gb|EFW48668.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
 gi|323167151|gb|EFZ52869.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   + + E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNCASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|194439439|ref|ZP_03071515.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|194421615|gb|EDX37626.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 318/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++  + +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKESKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|307132177|ref|YP_003884193.1| ribonucleoside-diphosphate reductase 2, subunit alpha [Dickeya
           dadantii 3937]
 gi|306529706|gb|ADM99636.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Dickeya
           dadantii 3937]
          Length = 715

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/754 (23%), Positives = 306/754 (40%), Gaps = 82/754 (10%)

Query: 204 FSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            ++   +   P    +Y  + A   +      +     ++  +    +       +F   
Sbjct: 1   MATAEFLTDAPSSQLDYHALNAMLNIYDADGRIQFEQDRQAIQVYFRDHVLPRTRHFPSL 60

Query: 260 IE-------EGVKAR-LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
            E       EG     +L    +DF +       ++   F   +LG    Y  Y L    
Sbjct: 61  EEKLRWLQQEGYYEPQVLARYQLDFIVELFQRAAEHRYQFQ-SFLGAFKFYTSYALKTFD 119

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
               +E        VA+ LA  +T+    A +  + + S  F  +TPT  N G +   +L
Sbjct: 120 GSQYLESYDDRACMVALTLAQGDTQ---LARQLVDEMMSGRFQPATPTFLNCGKQQRGEL 176

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 177 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIM 236

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD R+   D++ R   ++    IPD+
Sbjct: 237 KMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDI 296

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            ++    N    LFSP +V  ++ +   E  ++ E Y+       I+ +  ++A   ++ 
Sbjct: 297 TLRLARANQDMHLFSPYDVERVYGMPLSEISVS-EKYDELVSHPGIRKW-TLNARQFFQT 354

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S + E            
Sbjct: 355 LAEIQFESGYPYLMFEDTVNRHN--PVAGRITMSNLCSEILQVSRASEYQEDLNYRQVGK 412

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   LA T+  AVR L  V D++    +      N    A
Sbjct: 413 DISCNLGSLNIAR-----VMDGGNLARTVEIAVRALTAVSDMSHIGAVPSIANGNTESHA 467

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    + Y S EA++  +     +++HA+  S  LAQE    ++ F  S
Sbjct: 468 IGLGQMNLHGYLAREGLFYGSEEALDFTNLYFYAVTYHALRTSSRLAQERNQTFAGFADS 527

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +    +   E          +       W  LK +V   G+ N N  A+
Sbjct: 528 QYASGAFFDRYLSQEWQPVTERVRELFACAGIALPLPEDWLALKAQVMRHGLYNQNLQAV 587

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  +  + Y
Sbjct: 588 PPTGSISYINHATASIHPIVSRIEIRK------------------------EGKLGRVYY 623

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                     + +D ++ +  A+EI P  +I++ +   + +DQ  SL L + D  + + +
Sbjct: 624 PA------PYMTNDNQRFYQDAYEIGPEKIIDTYAVATRHVDQGLSLTLFFPDTATTRDI 677

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 NKAQIYAWKKGIKTLYYIRVRQKA-LEGTEIQGC 710


>gi|37525252|ref|NP_928596.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784679|emb|CAE13579.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide
           reductase R1 subunit) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 709

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/715 (24%), Positives = 303/715 (42%), Gaps = 77/715 (10%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
               +  P     H ++    E      +EG     + E   DF ++       Y + F 
Sbjct: 39  YFRQHVNPNTLFFHSLK----EKLDFLQQEGYYEINVLE-QYDFTVIKKLFQQAYSKKFR 93

Query: 293 F-EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F  +LG    Y  Y L    N   +E  +     VA+ LA  +   +  A    + + S 
Sbjct: 94  FQTFLGAFKYYTSYTLKTFDNKRYLERYEDRVCMVALTLAQGD---QMLACRLVDEMISG 150

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N G  +  +L SCFL  + D++  I  ++     L+K  GG+    + +R
Sbjct: 151 RFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLLSNLR 210

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++ 
Sbjct: 211 ETGAPIKMIQNQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRE 270

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    IPD+  K    N    LFSP ++  ++ +   E  +  E Y   
Sbjct: 271 NADEKIRIKTLSIGVVIPDITFKLAKHNEDMYLFSPYDIQRVYGVPMSEISMT-EKYAEM 329

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +  +I+  + I+A   +  +  + FE+G+P+I ++D     +     G ++ SNLC+EI
Sbjct: 330 VNNQQIRKSK-INAREFFMALAELQFESGYPYIMYEDTV--NNANPIKGRINMSNLCSEI 386

Query: 589 TLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
              +S+ E               CNLGS+N+      +  D      +I TAVR L  V 
Sbjct: 387 LQVNSASEYEEDLSYHHIGKDISCNLGSMNIA-----HTMDSPDFTLSIETAVRALTAVS 441

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D++   ++   +K N    AIGLG M     L    I Y S E ++  +     +++HA+
Sbjct: 442 DMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYLAREKIHYGSEEGIDFTNIYFYIVTYHAL 501

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPW 746
             S ++A ER   +  FK S +  G F      +          ++ ++  +   ++  W
Sbjct: 502 RTSNQIAIERNSYFKGFKDSRYANGEFFNKYTEITWQPQTKKVSQLFEQAGIKIPNQQDW 561

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSF 805
            ELK  +   G+ N N  AIAPT +I+ I   + SI P    + ++    +G       F
Sbjct: 562 LELKASIMAHGIYNQNLQAIAPTGSISYINNSTSSIHPIVSRIEIRKDGKTGRVYYPAPF 621

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           + N                               +  + +  A+EI P  +I++ +   +
Sbjct: 622 MTN-------------------------------NNLEYYQDAYEIGPEKIIDTYAIATQ 650

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  D+ + + ++     AW   +KT YY+R +  T++E + ++  
Sbjct: 651 HVDQGLSLTLFFKDDATTRDINKAQIYAWRKRIKTLYYIRLKQ-TALEGTEVQDC 704


>gi|320180202|gb|EFW55138.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|332088655|gb|EGI93768.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|323173042|gb|EFZ58673.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|320640664|gb|EFX10200.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 317/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L +K  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQKTMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TA R L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAGRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +        G + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|331669413|ref|ZP_08370259.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332280667|ref|ZP_08393080.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|331063081|gb|EGI34994.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332103019|gb|EGJ06365.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 714

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 317/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|110642800|ref|YP_670530.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|110344392|gb|ABG70629.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 536]
          Length = 701

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------EYFCRYIEEGV 264
           +Y  + A   +  L        + K  +A    M               +     + EG 
Sbjct: 2   DYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQRLNWLVNEGY 58

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +       D V       +   F F  +LG    Y  Y L   +G R  E      
Sbjct: 59  YDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRV 117

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 118 TMVALTLAQGD---ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 174

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 175 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   
Sbjct: 235 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMA 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+ E Y+      E    + ++A   ++++  + FE+G+P+
Sbjct: 295 LFSPYDVERVYGKPFADVAIS-ERYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPY 352

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 353 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA 410

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D    A T+ TAVR L  V D++  H++   +  N    AIGLG M     L
Sbjct: 411 -----HTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYL 465

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +
Sbjct: 466 AREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYL 525

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 526 QSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 585

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 586 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------------- 617

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI    +I++ +   + +DQ  SL  L+LD  + + +D     AW  G
Sbjct: 618 ---NLALYQDAYEIGAEKIIDTYAETTRHVDQGLSLTLLFLDTATTRDIDKAQIYAWRKG 674

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 675 IKTLYYIRLRQMA-LEGTEIEGC 696


>gi|313672578|ref|YP_004050689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939334|gb|ADR18526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 762

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/624 (27%), Positives = 290/624 (46%), Gaps = 79/624 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFYN 344
                 + +L  RY      G  +E P+  F RVA+ +A       K+ +  + A +FY+
Sbjct: 13  ELSNNAITVLKKRYLKRDSEGKLLETPKEMFQRVAINIAQADLNYNKDADIAETARKFYD 72

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++    F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  +
Sbjct: 73  IMVDLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 132

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G I F+ V +     + QGG R+GA    L   H D+ +F+ 
Sbjct: 133 SRLRPKDDVVKTTKGVSSGPISFISVFDAATEVIKQGGTRRGANMGILRVDHPDIMDFIY 192

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K    D+ +  + N +  + + FMK V +   + L +P +                  
Sbjct: 193 AKK----DKTKLTNFNLSVGLTEEFMKAVEEGKDFELINPRDKK---------------- 232

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V  K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N 
Sbjct: 233 -----------VVGKLNARKVFDEMVQLAWEGGDPGIIFLDRINKANPTPKEGEIESTNP 281

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     + + D+++L   I T+V  LDNVID+N + I 
Sbjct: 282 CGEQPLLPYES----CNLGSINLAKFIKDKKIDWEELKYVIHTSVHFLDNVIDMNKYPIP 337

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + +     +R IGLGLMG+  AL LL IPY S E +E+A++ M+F +  +  AS +LA+ 
Sbjct: 338 EIEYMTKKNRKIGLGLMGWADALALLEIPYNSYEGIELAEKVMKFFNDESKIASSKLAEV 397

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG++ +F+ S++ +  F                                    +RN+   
Sbjct: 398 RGSFPNFEDSIYPEMGFKY----------------------------------LRNATTT 423

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   + ++ M       VN +    +K+  ++ E ++  
Sbjct: 424 TIAPTGTISIIGNASSGVEPYFAIAFYRNVMDNTKLVEVNPYFKQAVKEYGIYSEELMEK 483

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +    G + +I  +P+ LKKI  TA EI P+W ++  +  QK+ D A S  +    + + 
Sbjct: 484 I-AEKGILKDIPEVPEKLKKIFVTAHEISPIWHVKMQAAFQKYTDNAVSKTVNFSHDATV 542

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSR 906
           + +  +Y  A+ +G K     R  
Sbjct: 543 EDVKNVYLLAYKLGCKGITIYRDG 566


>gi|293415926|ref|ZP_06658566.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432115|gb|EFF05097.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/754 (24%), Positives = 318/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V    D  +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFDHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYTCTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|218547808|ref|YP_002381599.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355349|emb|CAQ87956.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 315/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSS 370
           R  E        VA+ LA  +      A +  + + S  F  +TPT  N G  +  +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGDK---TLAKQLTDEMLSGRFQPATPTFLNCGKRQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F +IA   +  +    E    + I+A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+  AVR L  V DI+   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVEIAVRGLTAVSDISHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+    ++   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L + D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|188533085|ref|YP_001906882.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028127|emb|CAO95984.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 693

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/732 (24%), Positives = 302/732 (41%), Gaps = 81/732 (11%)

Query: 225 LEKLRREVLTTVYKKPQKAT-----HHEMQ-----CLYPEYFCRYIEEGVKARLLHESMM 274
           +  L  +     ++K ++AT      H +          E     + EG     +  +  
Sbjct: 1   MLNLYDDNAHIQFEKDREATRQYFIQHVIPNSVQFDSIAERLQFLVAEGYYEADVL-NAY 59

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALK 331
            F+ V         R F F  +LG    Y  Y L   +G R  E        VA+ LA  
Sbjct: 60  PFEFVCSLFAEATARRFRFQTFLGAWKFYTSYTLKTFDGKRYLEGFTERVCMVALTLAKG 119

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQEN 390
           +      A+   + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+   
Sbjct: 120 DQP---LALALTDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSA 176

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   
Sbjct: 177 LQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAV 236

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  +
Sbjct: 237 YLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQQMALFSPYDVERI 296

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + L   +  I+ + +E   D    + F  I+    ++ +  + FE+G+P+I F+D  N  
Sbjct: 297 YGLPFADISISEKYHEMLNDARIRRTF--INPREFFQTLAEIQFESGYPYIMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDY 618
           +     G ++ SNLC+EI   +S  E               CNLGS+N+      +  D 
Sbjct: 355 N--PVHGRINMSNLCSEILQVNSPTEYHDDLSYRRIGKDISCNLGSLNIA-----HAMDS 407

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              A T+  AVR L  V D +  H++   ++ N    AIGLG M     L    I Y S 
Sbjct: 408 ADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +    + R   
Sbjct: 468 AGLDFTNIYFYTVTYHALRTSNQLARERSTTFSGFAQSRYASGEYFNPYLEQSWQPRTSQ 527

Query: 736 -------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                    +   +R  W  LK  V   G+ N N  AI PT +I+ I   + SI P    
Sbjct: 528 VAALFANAGIAIPTRQQWQTLKDAVMQYGLYNQNLQAIPPTGSISYINHATSSIHPIVSR 587

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + ++           +  +N                              +D +  +  A
Sbjct: 588 IEIRKEGKTGRVYYPAPFMN------------------------------NDNQAFYRDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           ++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R 
Sbjct: 618 YDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIRLRQ 677

Query: 908 ATSVEKSTLKGV 919
              ++ + ++G 
Sbjct: 678 MA-LQGTEVEGC 688


>gi|308187850|ref|YP_003931981.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058360|gb|ADO10532.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 712

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/695 (25%), Positives = 300/695 (43%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + E      +  +  DF+ +   +++   R F F  +LG    Y  Y L   +
Sbjct: 58  AERLRYLVAESYYEADVL-NQYDFEFLLALHEVAENRGFEFKTFLGAWKYYTSYTLKTFD 116

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +     VA+ LA  +   E  A      + S  F  +TPT  N G +   +L
Sbjct: 117 GKRYLETFEQRACMVALTLAQGD---ETLARALLEEILSGRFQPATPTFLNCGKQQRGEL 173

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 174 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVM 233

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 234 KMLEDAFSYANQLGARQGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKSLSLGVVIPDI 293

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     +  I+ +  E  AD    K +  I     ++ 
Sbjct: 294 TFQLAKENKPMALFSPYDVERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQT 351

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E            
Sbjct: 352 LAEIQFESGYPYIMYEDSVNRSN--PIAGRINMSNLCSEILQVNSASEYNDDLSYRRVGK 409

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+      +  D   LA T+  AVR L +V  ++   ++    + N    A
Sbjct: 410 DISCNLGSLNIA-----HAMDSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHA 464

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I+++A+  S +LAQE    +  F  S
Sbjct: 465 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADS 524

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  GV+    +          +A++  +  +   ++  W  L+  V   G+ N N  AI
Sbjct: 525 DYASGVYFDKYLQRAWLPRTERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAI 584

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ NE                
Sbjct: 585 PPTGSISYINHATSSIHPIVSPIEIRKEGKTGRVYYPAPFMTNE---------------- 628

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                             ++  A++I P  +I++ +   + +DQ  SL L+  D+ + + 
Sbjct: 629 ---------------NLHLYQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRD 673

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    ++ + ++G 
Sbjct: 674 INKAQIYAWKKGIKTLYYIRLRQMA-LQGTEVQGC 707


>gi|320186461|gb|EFW61189.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   + + E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNCASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|157162126|ref|YP_001459444.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|188494464|ref|ZP_03001734.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|253772464|ref|YP_003035295.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037717|ref|ZP_04871775.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|254162612|ref|YP_003045720.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|301026691|ref|ZP_07190102.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|331643363|ref|ZP_08344494.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|157067806|gb|ABV07061.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|188489663|gb|EDU64766.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|226839341|gb|EEH71362.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|242378237|emb|CAQ33012.1| nrdE, subunit of ribonucleoside-diphosphate reductase 2, alpha
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323508|gb|ACT28110.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974513|gb|ACT40184.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978680|gb|ACT44350.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|299879613|gb|EFI87824.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|309703040|emb|CBJ02372.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli ETEC H10407]
 gi|315615062|gb|EFU95699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|331036834|gb|EGI09058.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332344557|gb|AEE57891.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 317/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|170683654|ref|YP_001744826.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|170521372|gb|ACB19550.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ +              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASDYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGVTLPTREMWAQLRDDVMCYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|284922617|emb|CBG35705.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 042]
          Length = 714

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/731 (25%), Positives = 309/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 29  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 83

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 84  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 141

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 142 -ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 200

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 201 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 260

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 261 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 317

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 318 YGKPFADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 376

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 377 -PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPD 430

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TA+R L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 431 FARTVETAMRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 490

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 491 LDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGNWQPKTAKVG 550

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W  L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 551 ELFTRSGITLPTREMWARLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 610

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 611 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 639

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 640 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 699

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 700 A-LEGTEIEGC 709


>gi|300990602|ref|ZP_07179252.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300305719|gb|EFJ60239.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
          Length = 701

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------EYFCRYIEEGV 264
           +Y  + A   +  L        + K  +A    M               +     + EG 
Sbjct: 2   DYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQRLNWLVNEGY 58

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +       D V       +   F F  +LG    Y  Y L   +G R  E      
Sbjct: 59  YDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRV 117

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 118 TMVALTLAQGD---ETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 174

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 175 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   
Sbjct: 235 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMA 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+ E Y+      E    + ++A   ++++  + FE+G+P+
Sbjct: 295 LFSPYDVERVYGKPFADVAIS-ERYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPY 352

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 353 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA 410

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D    A T+ TAVR L  V D++  H++   +  N    AIGLG M     L
Sbjct: 411 -----HTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYL 465

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +
Sbjct: 466 AREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYL 525

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 526 QSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 585

Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 586 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------------- 617

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 618 ---NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 674

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 675 IKTLYYIRLRQMA-LEGTEIEGC 696


>gi|110806692|ref|YP_690212.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110616240|gb|ABF04907.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 5 str. 8401]
 gi|281602051|gb|ADA75035.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313648325|gb|EFS12769.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332753900|gb|EGJ84275.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332755582|gb|EGJ85945.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332765625|gb|EGJ95838.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333015921|gb|EGK35257.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
          Length = 714

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    + T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|82545244|ref|YP_409191.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81246655|gb|ABB67363.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           boydii Sb227]
 gi|332092048|gb|EGI97126.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 714

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   + + E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNCASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|332753392|gb|EGJ83772.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|333000677|gb|EGK20254.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
          Length = 714

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  S     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAS--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    + T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|300916823|ref|ZP_07133527.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300415889|gb|EFJ99199.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
          Length = 701

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   + + E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|227888209|ref|ZP_04006014.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300986154|ref|ZP_07177744.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301050517|ref|ZP_07197393.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|227834849|gb|EEJ45315.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300297773|gb|EFJ54158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300407908|gb|EFJ91446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|307554651|gb|ADN47426.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ABU 83972]
 gi|315290986|gb|EFU50351.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
          Length = 701

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/731 (25%), Positives = 310/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +   T + +P        Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|145224884|ref|YP_001135562.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           gilvum PYR-GCK]
 gi|145217370|gb|ABP46774.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 701

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/694 (25%), Positives = 295/694 (42%), Gaps = 71/694 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     IE+    R + +     + V    D  Y + F F  ++G    Y  Y L   +
Sbjct: 47  DEKLDYLIEKNYYEREVLDQYSR-NFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFD 105

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + V++ LA  +T     A +  + +    F  +TPT  NSG  +  + 
Sbjct: 106 GKRYLERFEDRVVMVSLTLASGDT---TLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEP 162

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 163 VSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 222

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 223 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDI 282

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ L   +  +  + YE   D        KI A   ++ 
Sbjct: 283 TFELAKKNEDMYLFSPYDVERVYGLPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 340

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I ++D  N  +     G +  SNLC+EI   S+              +
Sbjct: 341 LAELQFESGYPYIMYEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 398

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D     ++   ++ N++  A
Sbjct: 399 DISCNLGSLNIA-----KAMDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 453

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 454 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 513

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E + E          +    +  W +LK  V+  G+ N N  A+
Sbjct: 514 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 573

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 574 PPTGSISYINHSTSSIHPIASKVEIRK------------------------EGKIGRVYY 609

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + ++  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 610 PA------PYMTNENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDV 663

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 664 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 696


>gi|323971480|gb|EGB66715.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 701

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 312/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++  + +G       F+ NE                                  ++  A+
Sbjct: 598 IRKESKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|225619346|ref|YP_002720572.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           hyodysenteriae WA1]
 gi|225214165|gb|ACN82899.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 773

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/799 (27%), Positives = 366/799 (45%), Gaps = 92/799 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +++ A  G +  +++++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVIDWATEGKEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E      KK     H         +  + I+  + 
Sbjct: 71  VNMISPLYPMYDTIAEKLYLMKIYKETCG--LKKIGSYPH------IKNFLKKGIKYKIY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + + +   D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKDIIQLFTDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMVAA 182

Query: 326 MGLALKE--------------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +              +E+ K     Y++LS      +TP + NS T   QL+SC
Sbjct: 183 MFSFYDDYYKGENKDKLEISKSERLKYIKRTYDMLSRHEVTFATPRIANSMTIKAQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF+K  
Sbjct: 243 ILNTPADDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++F +
Sbjct: 303 EQTISSFNQGGVRKGACVVTFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ YG++F +AY  YE ++   + K+     A  L  ++L 
Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYIYYESKSSIRKKKIK----AKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595
           +  ETG+ ++TF D  N ++       V +SNLC EI + S                   
Sbjct: 419 VRQETGNLYLTFVDNINEQNMVNRF--VGASNLCQEIVIPSYPSKLIKEKYVINEDGEYE 476

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   E  +CNL S+NL++      F  +K  S   T +R  DN+ID   + +++ +
Sbjct: 477 IIQRKKSGEIGICNLVSVNLMSWV---NFSPEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R IG+G++ + + L    I Y   EA+E  ++  + + +H   AS  LA+ERG 
Sbjct: 534 IANKKNRPIGIGVINYANLLASNKIKYTDKEALEFTNKVFDDLYYHIYEASNILARERGP 593

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +F  S W +G+ P   I LL   +         +  WD+L + +K  G+R S   AIA
Sbjct: 594 YKTFNESKWKEGLTPF-HISLLNNNKKNNLNVSVDKEKWDKLAENIKNNGVRFSFHGAIA 652

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTAT       ++SI+P     +++     +       LV  +K+               
Sbjct: 653 PTATSGKSVSATESIEPIVDLFFIE-----EGIQTLPSLVPNIKK--------------- 692

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                         ++ +   + I    +IE A+ RQ++IDQ+QSLNLY  +P S K+L 
Sbjct: 693 -------------NREYYERCWNIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAKELW 739

Query: 887 FIYRQAWLMGLKTTYYLRS 905
              + A  +GLKT YY+++
Sbjct: 740 DDIQYAMDLGLKTLYYMKT 758


>gi|191167117|ref|ZP_03028938.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|190902899|gb|EDV62627.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
          Length = 714

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|254505919|ref|ZP_05118064.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219551142|gb|EED28122.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 710

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/755 (25%), Positives = 325/755 (43%), Gaps = 82/755 (10%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           LS   L+   + +   L++++ N      R        +     + +           L 
Sbjct: 5   LSTEPLDYHALNAMLNLLDEKGNIQLDADR--------QAARQFFLQHVNQNTFFFHNL- 55

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + EG   + + E   D + + L  D  Y+  F F  +LG    +  Y L   +
Sbjct: 56  AEKLDYLVNEGYYEKEVLE-QYDREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRD 114

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +   +  A+ LA  +      A++    + S  F  +TPT  NSG +   +L
Sbjct: 115 GKRYLERFEDRVVMTALTLARGDK---AFALDLMQEIISQRFQPATPTFINSGKKSRGEL 171

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I G   +S GV+P +
Sbjct: 172 ISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVM 231

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+
Sbjct: 232 KLLEDSFSYANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDI 291

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            ++   QN    LFSP +V  ++ +   E  ++ E Y    D   I+  + ISA  L++ 
Sbjct: 292 TLELAKQNKDMYLFSPHDVERVYGVPFSEISVS-EKYYEMVDDPRIRKSK-ISARGLFQT 349

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   + +              
Sbjct: 350 LAEIQFESGYPYLMFEDTVNAAN--PIKGRINMSNLCSEILQVNDASHFNDDLSYAHLGR 407

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGSIN+         D   LA T+  ++R L+ V +++   ++   ++ N    A
Sbjct: 408 DISCNLGSINIA-----KALDGGHLAHTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHA 462

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    I Y S EAV+          +H ++AS +LAQE +  +  F+ S
Sbjct: 463 IGLGQMNLHGFLAREQIHYDSEEAVDFTRAYFATTLYHCLTASNKLAQEKQQVFVGFEHS 522

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +        G++A + + L M   S   W +L+ +V   G+ N N  AI
Sbjct: 523 QYATGEFFAKYLQQDYSPRTGIVAALFERLDMQVPSIDDWQQLQSKVMESGLYNRNLQAI 582

Query: 767 APTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N                 
Sbjct: 583 PPTGSISYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSN----------------- 625

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                         D  +    A++I P  +I+  +   + +DQ  SL L+  DE + + 
Sbjct: 626 --------------DNLEYFKDAYDIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRD 671

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW   +KT YY+R R    +E + ++G 
Sbjct: 672 INKAQIYAWKKKIKTLYYIRMRQKA-LEGTQVEGC 705


>gi|331654158|ref|ZP_08355158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331047540|gb|EGI19617.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 714

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 317/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +  +    D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVL-NRYPRDFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|117624911|ref|YP_853851.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|115514035|gb|ABJ02110.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli APEC O1]
 gi|315284935|gb|EFU44380.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
          Length = 701

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/743 (24%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------EYFCRYIEEGV 264
           +Y  + A   +  L        + K  +A    M               +     + EG 
Sbjct: 2   DYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQRLNWLVNEGY 58

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +       D V       +   F F  +LG    Y  Y L   +G R  E      
Sbjct: 59  YDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRV 117

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 118 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 174

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 175 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   
Sbjct: 235 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMA 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+
Sbjct: 295 LFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPY 352

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 353 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA 410

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L
Sbjct: 411 -----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYL 465

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +
Sbjct: 466 AREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYL 525

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 526 QGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 585

Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 586 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------------- 617

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 618 ---NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 674

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 675 IKTLYYIRLRQMA-LEGTEIEGC 696


>gi|331648396|ref|ZP_08349484.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331042143|gb|EGI14285.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
          Length = 714

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +       ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAERINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|260869354|ref|YP_003235756.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765710|dbj|BAI37205.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180096|gb|EFZ65648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
          Length = 714

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 316/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L+S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELAS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|323978714|gb|EGB73796.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 714

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 184/754 (24%), Positives = 314/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR 313
                + EG     +       D V       +   F F  +LG    Y  Y L     +
Sbjct: 62  RLNWLVNEGYYDENVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 314 IEMPQAFFMRV---AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + + F  RV   A+ LA  +      A +  + + S  F  +TPT  N G  +  +L 
Sbjct: 121 HYL-EDFADRVTMVALTLAQGDK---TLATQLTDEMLSGRFQPATPTFLNCGKRQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
                +NA   LFSP +V  ++     +  I+ E+Y+      E    + I+A   ++++
Sbjct: 297 FHLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYINARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+  AVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVEIAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YANGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAAKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|49475006|ref|YP_033047.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           henselae str. Houston-1]
 gi|49237811|emb|CAF27006.1| Ribonucleotide reductase alpha-chain [Bartonella henselae str.
           Houston-1]
          Length = 716

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/725 (26%), Positives = 304/725 (41%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     IEEG   + L   + DF  +   
Sbjct: 36  FDMDRLAARQYFLQHVNQNTVFFHNLK----EKIDYLIEEGYYEKAL-FELYDFSFIKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQGNK---ALA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 148 ESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNAKIRKKKISARVFFQTLAEIQFESGYPYILFEDTANRAN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            ++ SNLC+EI   + + E               CNLGS+N+         D D    T+
Sbjct: 383 RINMSNLCSEILQVNEASELEADLTYRTVGSDISCNLGSMNIA-----KAMDSDDFGRTV 437

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             AVR L  V D+ N   +    K N    AIGLG M     L    I Y SPEA++  +
Sbjct: 438 EAAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTN 497

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDE 735
                +++HAI  S  +A+E +  +  F+ S +  G F    I         L+ E+   
Sbjct: 498 IYFYIVAYHAIRVSNLIARERQKMFVGFEKSAYADGSFFAKYIEQEWKPQFSLVQELFAR 557

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    +  W ELKK V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 558 NNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRK-- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N           +  A+EI P  
Sbjct: 616 ----------------------EGKIGRVYYPAPYMDNTNL------DFYQDAYEIGPEK 647

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 648 IIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQVA-LSGT 706

Query: 915 TLKGV 919
            + G 
Sbjct: 707 EVDGC 711


>gi|324005771|gb|EGB74990.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
          Length = 701

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 179/689 (25%), Positives = 297/689 (43%), Gaps = 73/689 (10%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-E 315
            + EG     +       D V       +   F F  +LG    Y  Y L   +G R  E
Sbjct: 53  LVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLE 111

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT 374
                   VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL 
Sbjct: 112 DFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLL 168

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D 
Sbjct: 169 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 228

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      
Sbjct: 229 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAK 288

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++  + F
Sbjct: 289 ENAQMALFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQF 346

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNL 602
           E+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E               CNL
Sbjct: 347 ESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNL 404

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M
Sbjct: 405 GSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQM 459

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
                L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G 
Sbjct: 460 NLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGE 519

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    +          + E+     +   +R  W +L+  V   G+ N N  A+ PT +I
Sbjct: 520 YFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSI 579

Query: 773 ANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++    +G       F+ NE                      
Sbjct: 580 SYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------- 617

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                       ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 618 ---------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 668

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 669 YAWRKGIKTLYYIRLRQMA-LEGTEIEGC 696


>gi|330908706|gb|EGH37220.1| ribonucleotide reductase of class 1b (aerobic), alpha subunit
           [Escherichia coli AA86]
          Length = 714

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHASGFRFKTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +       ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAERINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|306836785|ref|ZP_07469745.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
 gi|304567331|gb|EFM42936.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
          Length = 720

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/758 (24%), Positives = 310/758 (40%), Gaps = 79/758 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHH 246
           + T L  +    + +E          +L  L            RE     + +       
Sbjct: 1   MSTQLGKTVAEPVSQEEQLDYHALNAML-NLYDGDGKIQFDKDREAANQFFLQHVNQNTV 59

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
               L  E     +        + E+  DF+ +       Y   F F  +LG    Y  Y
Sbjct: 60  YFHDL-EEKIDYLVRNKYYDPAVIEA-YDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSY 117

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR- 364
            L     R  + + F  RV+M          + A    + + +  F  +TPT  N+G + 
Sbjct: 118 TLKTFDGRRYL-ERFEDRVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQ 176

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GV
Sbjct: 177 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGV 236

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 237 IPVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVV 296

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD+  +    N    LFSP +V  ++     +  +  E+YE   +   I+  +KI+A  
Sbjct: 297 IPDITFELAKNNDDMYLFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARH 354

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I ++D  N  +P +    ++ SNLC+EI   +S  E        
Sbjct: 355 FFQTVAELQFESGYPYIMYEDTVNRANPVKTS-RINMSNLCSEILQVNSPSELNADLSYD 413

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+         D    + T+ TA+R L +V D     ++   +K N 
Sbjct: 414 QVGNDISCNLGSLNIAM-----TMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGND 468

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   HI Y S E ++  +     I + A+ AS ++A+ER   ++ 
Sbjct: 469 DSHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTE 528

Query: 711 FKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           F  S +  G F               +  + D  ++   +   W ELK+ V   G+ N N
Sbjct: 529 FPESDYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRN 588

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P    + ++                         E  I 
Sbjct: 589 LQAVPPTGSISYINNSTSSIHPIASKIEIRK------------------------EGKIG 624

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
            + Y    + N      D  +    ++EI    ++++ +   K++DQ  SL L+  D  +
Sbjct: 625 RVYYPAAHMDN------DNLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTAT 678

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 679 TRDVNKAQIYAWRKGIKTLYYIRVRQMA-LEGTEIEGC 715


>gi|157159104|ref|YP_001463985.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|157081134|gb|ABV20842.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
          Length = 714

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTDHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      N  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----NTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|16130589|ref|NP_417161.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89109468|ref|AP_003248.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|170082261|ref|YP_001731581.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901819|ref|YP_002927615.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|2507305|sp|P39452|RIR3_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85675520|dbj|BAA16539.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|169890096|gb|ACB03803.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238863479|gb|ACR65477.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|315137288|dbj|BAJ44447.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
          Length = 714

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 317/754 (42%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|154498792|ref|ZP_02037170.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
 gi|150272182|gb|EDM99386.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
          Length = 784

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/668 (27%), Positives = 293/668 (43%), Gaps = 85/668 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
            A       +L  RY +    G   E     F RVA  +A  +            A  FY
Sbjct: 1   MAISENARAVLEKRYLIRDEKGEPTETVDDLFHRVANAIAAADAAFDPKADVAATASRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           N+++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  NMMTGLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ +F+
Sbjct: 121 FSRLRPRGSTVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILDFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    +D +   + N +  I + FM+ V     + L  P                   
Sbjct: 181 TCK----NDTKEITNFNISVGITEKFMQAVENGGSYELVDPAT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV   ++A  ++ K+++  ++TG P I F D  N  +P    G + S+N
Sbjct: 220 ----------HKVTGTLNAREVFEKIVSSAWQTGEPGIIFLDRLNRDNPCPQQGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL+ H          D DKL +TIRTAV  LDNVI++N
Sbjct: 270 PCGEQPLLPYE----ACNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDNVIEVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +      + R IGLG+MGF   L  + IPY S + V +A E ME ++      S 
Sbjct: 326 KYPLPEIDAMTRSTRKIGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIGHEESQ 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LAQ RGA+  F  S +  G                                      +R
Sbjct: 386 ALAQVRGAFPLFDESTYRNGK------------------------------------PIR 409

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDE 818
           N+    IAPT T++ I GVS  ++P +   Y+++ M        N  L N L  R L+ E
Sbjct: 410 NATVTTIAPTGTLSIIAGVSSGVEPVFAYAYIRNVMDNTHLIETNQILKNVLLSRGLYSE 469

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            ++  +    GS+ +++ IP+D+K++   A ++ P+W ++  +  Q + D A S  + + 
Sbjct: 470 ELMRKIV-EQGSLAHVDGIPEDIKRVFVCAHDVSPIWHVKMQAAFQAYTDNAVSKTVNFP 528

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + +++  +Y  A+ +G K T   R  S      +  K  DGK  A            
Sbjct: 529 NSATKEEVAEVYTLAYKLGCKGTTIYRDGSRDEQVLNIGKVNDGKDKAEKKDATGDPMVD 588

Query: 938 LGIPSSCT 945
             + +SC 
Sbjct: 589 AVLEASCD 596


>gi|300941042|ref|ZP_07155561.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300454206|gb|EFK17699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
          Length = 701

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +   T + +P        Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMTTHVRPNSVAFSSQQ----QRLNWLVNEGYYDENVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|170019073|ref|YP_001724027.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|256024813|ref|ZP_05438678.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|300949071|ref|ZP_07163118.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301645346|ref|ZP_07245293.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307139367|ref|ZP_07498723.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|169754001|gb|ACA76700.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|300451457|gb|EFK15077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301076380|gb|EFK91186.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|323935631|gb|EGB31948.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941489|gb|EGB37672.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323960579|gb|EGB56206.1| ribonucleotide reductase [Escherichia coli H489]
          Length = 701

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 311/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|30064042|ref|NP_838213.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|56480159|ref|NP_708489.2| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30042298|gb|AAP18023.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|56383710|gb|AAN44196.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 301]
          Length = 701

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 310/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           + T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 SRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSCITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|227502984|ref|ZP_03933033.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|227076045|gb|EEI14008.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
          Length = 720

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 182/758 (24%), Positives = 311/758 (41%), Gaps = 79/758 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHH 246
           + T L  +    + +E          +L  L            RE     + +       
Sbjct: 1   MSTQLGKTVAEPVSQEEQLDYHALNAML-NLYDGDGKIQFDKDREAANQFFLQHVNQNTV 59

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
               L  E     +        + E+  DF+ +       Y   F F  +LG    Y  Y
Sbjct: 60  YFHDL-EEKIDYLVRNKYYDPAVIEA-YDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSY 117

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR- 364
            L     R  + + F  RV+M          + A    + + +  F  +TPT  N+G + 
Sbjct: 118 TLKTFDGRRYL-ERFEDRVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQ 176

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GV
Sbjct: 177 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGV 236

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 237 IPVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVV 296

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD+  +    N    LFSP +V  ++     +  +  E+YE   +   I+  +KI+A  
Sbjct: 297 IPDITFELAKNNDDMYLFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARH 354

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I ++D  N  +P +    ++ SNLC+EI   +S+ E        
Sbjct: 355 FFQTVAELQFESGYPYIMYEDTVNRANPVKTS-RINMSNLCSEILQVNSASELNADLSYD 413

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+         D    + T+ TA+R L +V D     ++   +K N 
Sbjct: 414 QVGNDISCNLGSLNIAM-----TMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGND 468

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   HI Y S E ++  +     I + A+ AS ++A+ER   ++ 
Sbjct: 469 DSHAIGLGQMNLHGYLGREHIKYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTE 528

Query: 711 FKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           F  S +  G F               +  + D  ++   +   W ELK+ V   G+ N N
Sbjct: 529 FPESDYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRN 588

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P    + ++                         E  I 
Sbjct: 589 LQAVPPTGSISYINNSTSSIHPIASKIEIRK------------------------EGKIG 624

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
            + Y    + N      D  +    ++EI    ++++ +   K++DQ  SL L+  D  +
Sbjct: 625 RVYYPAAHMDN------DNLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTAT 678

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 679 TRDVNKAQIYAWRKGIKTLYYIRVRQMA-LEGTEIEGC 715


>gi|311232338|gb|ADP85192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris RCH1]
          Length = 754

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/657 (25%), Positives = 285/657 (43%), Gaps = 90/657 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 14  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 73

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 74  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 133

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 134 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 193

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +            
Sbjct: 194 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLE------------ 237

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 238 ---------------KGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 282

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 283 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 338

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 339 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 398

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S + +                                 
Sbjct: 399 DEGRAASKQLAKERGPFPAYPASTFAERDL------------------------------ 428

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 429 ----GPYRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 484

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 485 RAEGCHSPRLMETV-ASKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 543

Query: 871 QSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            S  +   +  + + +  IY  A+  G K     R    +     T  G        
Sbjct: 544 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEA 600


>gi|46581780|ref|YP_012588.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451203|gb|AAS97848.1| ribonucleoside-diphosphate reductase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 777

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/657 (25%), Positives = 285/657 (43%), Gaps = 90/657 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 37  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 96

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 97  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 156

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 157 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 216

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +            
Sbjct: 217 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLE------------ 260

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 261 ---------------KGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 305

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 306 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 361

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 362 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 421

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S + +                                 
Sbjct: 422 DEGRAASKQLAKERGPFPAYPASTFAERDL------------------------------ 451

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 452 ----GPYRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 507

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 508 RAEGCHSPRLMETV-ASKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 566

Query: 871 QSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            S  +   +  + + +  IY  A+  G K     R    +     T  G        
Sbjct: 567 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEA 623


>gi|218555223|ref|YP_002388136.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|218361991|emb|CAQ99597.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI1]
          Length = 714

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASSEYFSQYLQGNWQPKTTKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|83859673|ref|ZP_00953193.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852032|gb|EAP89886.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 626

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/679 (31%), Positives = 314/679 (46%), Gaps = 101/679 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RV+   A    +  + A   Y+ 
Sbjct: 39  DPSRDALLTDFGKKTLVDRYLLPG-----ESYQDMFARVSTAYA----DDLEHAQRLYDY 89

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N G       SCFL +V D L  I     EN  LA   GG+G  W 
Sbjct: 90  MSNLWFMPATPVLSNGGADRGLPISCFLNSVDDSLGDIVSTWTENVWLASNGGGIGTYWG 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +   NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 150 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEI 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    + D FM+ V ++  + L SP                     
Sbjct: 209 RKPSGDFNRKSLNLHHGLNVSDAFMEAVAKDEEFELISPRSGE----------------- 251

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSS 582
                     V + ++A  LW+K+L +  +TG P+I F D  N       ++    V  S
Sbjct: 252 ----------VVKTVNARKLWQKILEVRLQTGEPYILFSDTVNNNLPAHQRKLGLKVRQS 301

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EITL +  +      TAVC L S+N        + D   L    R    +L + I+
Sbjct: 302 NLCSEITLPTGVDHLGNDRTAVCCLSSLNAEKFL-EWKDDERFLEDIFRFLDNILQDFIE 360

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                +E+AK S    R++GLGLMGF S L  +++P+ S  A        + I   A  A
Sbjct: 361 RAPDEMERAKYSAARERSVGLGLMGFHSFLQSMNVPFESAMAQSWNKRMFQHIRQGADKA 420

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA+ERGA                                       D     VK   
Sbjct: 421 SVKLAEERGACP-------------------------------------DAADNGVKA-- 441

Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG FTV N +L   L+++   
Sbjct: 442 -RFSHKLAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPYLEKILEEKGKN 500

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+ S +  H+GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I QAQSLNL+
Sbjct: 501 TPAVWSSILEHEGSVQHLDCLDELEKDVFKTAFELDQRWVIEHAADRSPYICQAQSLNLF 560

Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L     K  L  ++  AW  G+K+ YY RS+S   V+++   G   K       D  S +
Sbjct: 561 LPGDVNKWDLHMLHWSAWEKGVKSLYYCRSKS---VQRAAYAGAGEK-------DEMSKS 610

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            S   P       EC  CQ
Sbjct: 611 LSDAAPK---DYDECLACQ 626


>gi|49473849|ref|YP_031891.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           quintana str. Toulouse]
 gi|49239352|emb|CAF25685.1| Ribonucleotide reductase alpha-chain [Bartonella quintana str.
           Toulouse]
          Length = 716

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/725 (26%), Positives = 305/725 (42%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     IEEG   + L   + DF  +   
Sbjct: 36  FDMDRLATRQYFLQHVNQNTVFFHNLK----EKIDYLIEEGYYEKTL-FELYDFSFIKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQGNKS---LA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F + + +  F  +TPT  N+G  +  +L SCFL  + D++  I  ++     L+K  G
Sbjct: 148 ESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVVIPDITFELAQNNEDMYLFSP---YDIERVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KI+A   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNAKIRKKKINARVFFQTLAEIQFESGYPYILFEDTANRAN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S + E               CNLGS+N+     +  F       T+
Sbjct: 383 RISMSNLCSEILQVSEASELETDLTYRTIGSDISCNLGSMNIAKAMESTNF-----GRTV 437

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             AVR L  V D+ N   +    K N    AIGLG M     L    I Y S EA++  +
Sbjct: 438 EIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSLEAIDFTN 497

Query: 685 ESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIG--------LLAEVRDE 735
                +++HAI AS  +A+ER   ++ F+ S +  G F    I         L+ E+   
Sbjct: 498 IYFYTVAYHAIRASNLIARERQKVFAGFEKSAYADGSFFTKYIEKEWKPQCVLVQELFAR 557

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    +  W ELKK V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 558 NNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRK-- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N           +  A+EI P  
Sbjct: 616 ----------------------EGKIGRVYYPAPYMDNTNL------NFYQDAYEIGPEK 647

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 648 IIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQVA-LSGT 706

Query: 915 TLKGV 919
            + G 
Sbjct: 707 EVDGC 711


>gi|120601069|ref|YP_965469.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris DP4]
 gi|120561298|gb|ABM27042.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris DP4]
          Length = 781

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/657 (25%), Positives = 285/657 (43%), Gaps = 90/657 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E         A E
Sbjct: 41  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 100

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 101 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 160

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 161 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 220

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P    +            
Sbjct: 221 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHSGLE------------ 264

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 265 ---------------KGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 309

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF----------ANNQFDYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F          A+   D+  L   I   VR 
Sbjct: 310 TNPCGEQPLLPYE----ACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 365

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 366 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 425

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S + +                                 
Sbjct: 426 DEGRAASKQLAKERGPFPAYPASTFAERDL------------------------------ 455

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 456 ----GPYRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 511

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 512 RAEGCHSPRLMETV-ASKGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 570

Query: 871 QSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            S  +   +  + + +  IY  A+  G K     R    +     T  G        
Sbjct: 571 VSKTVNLPNSATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEA 627


>gi|172041161|ref|YP_001800875.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           urealyticum DSM 7109]
 gi|171852465|emb|CAQ05441.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 719

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/740 (23%), Positives = 306/740 (41%), Gaps = 80/740 (10%)

Query: 215 NYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           +Y  + A   L             +     + +           L  E     +E     
Sbjct: 20  DYHALNAMLNLYDENGQIQFDADHKAANQFFLQHVNQNTVFFHNL-AEKLEYLVENKYYD 78

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRI-EMPQAFFMR 323
           + + +   DF  +       Y + F F+ +LG    Y  Y L   +G R  E  +     
Sbjct: 79  KEILDK-YDFPFIKALFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGKRYLERFEDRVCM 137

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+GLA  +   E+ A    + +    F  +TPT  N G  +  +  SCFL  + D++  
Sbjct: 138 VALGLADGD---EEMAKSLVDEILDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMES 194

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    + +R  GA I     +S G+IP +K+  D     NQ G
Sbjct: 195 IGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQSSGIIPVMKLLEDAFSYANQLG 254

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LF
Sbjct: 255 ARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDVTFELARKNADMYLF 314

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V  ++     +  +  E+Y+   +   I+  +KI+A   ++ +  + FE+G+P+I 
Sbjct: 315 SPYDVERVYGKPFADISVT-EHYDEMVEDPRIRK-KKINARDFFQTLAEIQFESGYPYIM 372

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAH 610
           ++D  N  +     G +  SNLC+EI   S+              +   CNLGS+N+   
Sbjct: 373 YEDTVNRAN--PIAGRITHSNLCSEILQVSTPSAFNEDLTYETIGDDISCNLGSMNIAM- 429

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    + TI  A+R L  V D     ++   ++ N    AIGLG M     L  
Sbjct: 430 ----AMDSADFSKTIEIAIRALTAVSDQTDIDSVPSIRQGNDHSHAIGLGQMNLHGYLGR 485

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS--- 725
            HI Y S EA++  +     + +  + AS ++A ERG  +  F+ S +  G F       
Sbjct: 486 EHIHYGSEEALDFTNAYFAAVMYECLKASNKIAIERGTAFHDFENSEYASGAFFDRYDPA 545

Query: 726 -----IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+    ++   +   W ELK  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 546 EFAPKTEKVKEIFAASSIEVPTTEDWAELKASVAKHGIYNRNLQAVPPTGSISYINNSTS 605

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P    + ++                         E  I  + Y          + ++
Sbjct: 606 SIHPIASKIEIRK------------------------EGKIGRVYYAA------PHMNNE 635

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
             +    A+E+    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+KT
Sbjct: 636 NLEYFEDAYEVGFEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKT 695

Query: 900 TYYLRSRSATSVEKSTLKGV 919
            YY+R R  T++  + ++G 
Sbjct: 696 IYYVRLRQ-TALSGTEVEGC 714


>gi|309795134|ref|ZP_07689553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308121105|gb|EFO58367.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 701

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPNF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|269957221|ref|YP_003327010.1| ribonucleoside-diphosphate reductase subunit alpha [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305902|gb|ACZ31452.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 718

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/689 (25%), Positives = 291/689 (42%), Gaps = 70/689 (10%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
            Y+ E                V     L Y +DF F  +LG    Y  Y L   +G +  
Sbjct: 68  AYLVENKYYEAATLEKYSPAFVKELFQLAYSKDFRFDTFLGAFKYYTSYTLKTFDGKKYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+GLA  +   E+ A +    + +  F  +TPT  N G  +  +  SCFL
Sbjct: 128 ERFEDRVSMVALGLADGD---EQLARDIVEEVVAGRFQPATPTFLNIGKAQRGEPVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 185 LRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIQNQSSGVIPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDVTFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            QN    LFSP +V  ++ +   +  I+ E Y+       I+    ISA   ++ +  + 
Sbjct: 305 KQNKDMHLFSPYDVERVYGVPFADVSIS-EKYDELVADDRIRK-TTISARDFFQTLAELQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCN 601
           FE+G+P+I F+D  N  +     G +  SNLC+EI   S+                  CN
Sbjct: 363 FESGYPYIMFEDTVNKAN--PIKGRITHSNLCSEILQVSTPSTFNEDLSYDHVGRDISCN 420

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+         D      TI TA+R L  V D     ++   K +N    AIGLG 
Sbjct: 421 LGSLNIA-----KAMDSPDFGHTIDTAIRALTAVSDQTSIESVPSVKHANELGHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    + Y S E V+  +     +++HAI+AS  LA ER  A+  F+ S +  G
Sbjct: 476 MNLHGYLARERVFYGSEEGVDFTNIYFYTVAYHAIAASNRLAIERGRAFGGFEDSKYATG 535

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +               +A++  +  +   ++  W  LK  V   G+ N N  A+ PT +
Sbjct: 536 EYFDKYTEQEWTPATARVAQLFADAGVAIPTQDDWRALKASVMEHGIYNQNLQAVPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  +  + Y     
Sbjct: 596 ISYINNSTSSIHPVPAKIEIRK------------------------EGKLGRVYYPA--- 628

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++    
Sbjct: 629 ---PFMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDVNRAQI 685

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R   ++E + ++  
Sbjct: 686 YAWRKGIKTLYYIRLRQ-QALEGTEVENC 713


>gi|222034375|emb|CAP77116.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli LF82]
          Length = 701

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/743 (24%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------EYFCRYIEEGV 264
           +Y  + A   +  L        + K  +A    M               +     + EG 
Sbjct: 2   DYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQRLNWLVNEGY 58

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +       D V       +   F F  +LG    Y  Y L   +G R  E      
Sbjct: 59  YDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRV 117

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 118 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 174

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 175 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   
Sbjct: 235 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMA 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+
Sbjct: 295 LFSPYDVERVYSKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPY 352

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 353 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA 410

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L
Sbjct: 411 -----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYL 465

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +
Sbjct: 466 AREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYL 525

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 526 QGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 585

Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 586 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------------- 617

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 618 ---NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 674

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 675 IKTLYYIRLRQMA-LEGTEIEGC 696


>gi|256019543|ref|ZP_05433408.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 701

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 311/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPN 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|220905096|ref|YP_002480408.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869395|gb|ACL49730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 781

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 165/642 (25%), Positives = 286/642 (44%), Gaps = 91/642 (14%)

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHF 351
           +L  RY    ++G  IE P+  F RVA  +A +E   +         A +FY+L++S+ F
Sbjct: 20  VLQKRYLRKNLDGKIIEAPRDLFWRVAAAIAAQEENYKNSSRTPNQLARDFYDLMTSWKF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 80  LPNSPTLMNAGTELGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKD 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 140 SRVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEKEGE 199

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V  +  + L SP+                          
Sbjct: 200 ----FNNFNLSVGLTESFMQAVENDEQYDLVSPNNGE----------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V +++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L 
Sbjct: 233 ----VMKRLPARDVFDLLVRKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLL 288

Query: 592 SSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHT 642
                   CNLGSINL                  D+D+L   +  +VR LDNVID +   
Sbjct: 289 PFE----ACNLGSINLSCFHVPGHENSADPAAGIDWDELRRVVHLSVRFLDNVIDASRFP 344

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++  ++   +R IGLG+MGF   L  L +PY S + +++ +  M F+      AS ELA
Sbjct: 345 LDRIGETVRKNRKIGLGVMGFADLLFQLGVPYDSQQGLDLGERIMAFVQGEGHRASAELA 404

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNS 761
            ERG + ++  S++ +                                   K +G  RN+
Sbjct: 405 LERGPFPAYGSSVFAR-----------------------------------KKLGPYRNA 429

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAM 820
               IAPT T++ I G S  ++P +   + ++ + G+    +N      L+   L+   +
Sbjct: 430 TVTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEINPHFEAALESGGLFSHEL 489

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
           +  +    GSI +++ +P  L+K   TA +I P W +   +  Q+  D A S  +   + 
Sbjct: 490 MDAVVA-KGSIQDMDYLPAPLRKTFVTAMDIAPQWHLRMQAAFQRHTDNAVSKTVNLSNS 548

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            + + +  IY  A+  G K     R    +    +T +G   
Sbjct: 549 ATEQDIREIYWLAYQEGCKGVTVYRDGCKSIQVLATGEGQKK 590


>gi|194432998|ref|ZP_03065281.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194418725|gb|EDX34811.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
          Length = 701

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|193065976|ref|ZP_03047035.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|260845323|ref|YP_003223101.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|192926390|gb|EDV81025.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|257760470|dbj|BAI31967.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|323159822|gb|EFZ45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
          Length = 714

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 186/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|260856786|ref|YP_003230677.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257755435|dbj|BAI26937.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|323154886|gb|EFZ41078.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
          Length = 714

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYPNQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|300906828|ref|ZP_07124509.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301306008|ref|ZP_07212088.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300401429|gb|EFJ84967.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300838719|gb|EFK66479.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315254451|gb|EFU34419.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 701

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   + + E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A++
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYK 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|291287794|ref|YP_003504610.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884954|gb|ADD68654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 761

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/656 (26%), Positives = 284/656 (43%), Gaps = 78/656 (11%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYN 344
                 + +L  RY     +G  +E P   F RVA+ +A  +   +K A        FY 
Sbjct: 15  DLTKNAITVLEKRYLKRDISGKPVEKPIDMFRRVALNIAEADKNYDKDADILSTATAFYE 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +++  F+ ++PTL N+G    QL++CF+  V D L  IF A++  A++ K  GG G  +
Sbjct: 75  QMAALKFLPNSPTLMNAGRELQQLAACFVLPVDDSLEAIFEAVKNTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G + F+ V +     + QGG R+GA    L   H D+ EF+ 
Sbjct: 135 SRLRPKDDVVKTTKGVSSGPVSFMTVFDAATETIKQGGTRRGANMGILRVDHPDIMEFIY 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +    +D+ +  + N +  I + FM+ V  +  + L++P                    
Sbjct: 195 AK----EDKTKLTNFNLSVGITEKFMQAVLNDTDYDLYNPKTGK---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                         K+ A  ++  M+ + +E G P I + D  N  +P    G + S+N 
Sbjct: 235 -----------TAGKLKAKEVFDTMVQLAWEGGDPGIVYLDRINAENPTPKEGDIESTNP 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL  +  + + D++ L  TI  AV  LDNVID+N + I+
Sbjct: 284 CGEQPLLPYES----CNLGSINLGKYVKDGKIDWEDLEKTIEVAVHFLDNVIDMNKYPIQ 339

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +       +R IGLGLMG+   L +L IPY + EA ++A++ M+FI       S  LA  
Sbjct: 340 QINDQTKRNRKIGLGLMGWADMLAMLAIPYNTDEATDLAEKVMQFIRDKGREKSSALAVI 399

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG + SFK S++ +  F                                    MRN+   
Sbjct: 400 RGDFPSFKDSIYPKMGFKN----------------------------------MRNATIT 425

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            IAPT TI+ I   S  I+P +   + +  M  +  V  S +  ++ +R+ +    + + 
Sbjct: 426 TIAPTGTISIIGSCSSGIEPYFAIAFYRQVMDNNKLVEVSPVFKDIAKREGFLSDELLEK 485

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGK 883
               G+   +  +P+  ++   T+ EI P W  +  +  QK+ D A S  + + +E + +
Sbjct: 486 VAETGTAHGLSMVPEKWQEAFVTSHEITPFWHTKMQAAFQKYTDNAVSKTVNFPNEATIE 545

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            +   Y  ++ +G K T   R  S T  V     K  + +  A     P      L
Sbjct: 546 DVKKTYLLSYNLGCKGTTIYRDGSRTGQVLNVGTKEKEAQPEATAEFTPKPRPKVL 601


>gi|213965883|ref|ZP_03394074.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
 gi|213951461|gb|EEB62852.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
          Length = 717

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/693 (25%), Positives = 294/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     +E       + E   +F+ V       Y   F F  +LG    Y  Y L   +G
Sbjct: 64  EKLDYLVENHYYEAEVLEK-YEFEDVKALFKQAYAHKFRFQTFLGAYKYYTSYTLKTFDG 122

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +      A    + + +  F  +TPT  NSG  +  +  
Sbjct: 123 KRYLERYEDRVCMVALTLADGDLG---LAQHLVDEIIAGRFQPATPTFLNSGKAQRGEPV 179

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 180 SCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNLREQGAPIKHIENQSSGVIPVMK 239

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 240 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDIT 299

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++     +  I  ENY    +   I+  +KI+A   ++ +
Sbjct: 300 FELAKRNDDMYLFSPYDVERVYGKPFADINIT-ENYADMVEDPRIRK-QKINARQFFQTI 357

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P+I F+D  N  +     G ++ SNLC+EI   ++              E 
Sbjct: 358 AEIQFESGYPYIMFEDTVNRAN--PIEGRINMSNLCSEILQVNTPSTYNADLSYEHVGED 415

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      T+ TA+R L  V +     ++   +K N    AI
Sbjct: 416 ISCNLGSLNIAM-----TMDSPDFGRTVETAIRGLTAVSEQTSIDSVPSIRKGNDGSHAI 470

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E ++  +     + +  + AS ++A+ER   + +F+ S 
Sbjct: 471 GLGQMNLHGYLGREKIMYGSEEGLDFTNAYFAAVLYAVLRASNKIARERGQKFVNFENSD 530

Query: 716 WDQGVFPID--------SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +  +            + E+ +    +      W +LK  V   G+ N N  A+ 
Sbjct: 531 YASGKYFDNFDPAEFQPKTQHVKEIFENSTAHIPDAEDWAQLKADVMEYGLFNRNLQAVP 590

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 591 PTGSISYINNSTSSIHPIASQIEIRK------------------------EGKIGRVYYP 626

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              + N      D ++    A+EI    +I++ +   K++DQ  SL L+  D  S + L+
Sbjct: 627 APHLDN------DNREYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTVSTRDLN 680

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 681 RAQIYAWRKGIKTLYYIRLRQVA-LEGTEVEGC 712


>gi|296127718|ref|YP_003634970.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
 gi|296019534|gb|ADG72771.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
          Length = 771

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/813 (26%), Positives = 371/813 (45%), Gaps = 95/813 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +   A  G++  +++++     K + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVTNWATGGIEAFTNQLLEGLNIK-INDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E      KK     H         +  + I+  + 
Sbjct: 71  VNMISPLYPVYDTIAEKLYLMKIYKETCG--LKKIGSYPH------IKNFLKKGIKYKIY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + + +   D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKDIVKLFSDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMTAA 182

Query: 326 MGLALKE--------------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +               E+ K   + Y++LS      +TP + NS T   QL+SC
Sbjct: 183 MFSFYNDYYKGENKDKLEISKAERLKYIKKTYDMLSRHEVTFATPRIANSMTIKAQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF+K  
Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++F +
Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ YG++F +AY  YE ++   + K+     A  L  ++L 
Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYMYYESKSSIRKKKIK----AKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595
           +  ETG+ ++TF D  N ++       V +SNLC EI + S                   
Sbjct: 419 VRQETGNLYLTFVDNINEQNMVNKF--VGASNLCQEIVIPSYPSKLIDEKYVINEEGEYE 476

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   E  +CNL SINL++      FD +K  S   T +R  DN+ID   + +++ +
Sbjct: 477 IIQRKKSGEIGICNLVSINLMSWV---NFDEEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R IG+G++ + + L    + Y   EA+E  ++  + + +H   AS  LA+ERG 
Sbjct: 534 IANKKNRPIGIGVINYANLLASNKLKYTDREALEFTNKVFDDLYYHIYQASNLLAKERGP 593

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +F  S W  G+ P     L    +  ++++   +  WD+L + +KT G+R S   AIA
Sbjct: 594 YKTFNESKWKDGLTPFHISLLNKSDKLNVSLD---KEKWDKLAEEIKTSGVRFSFHGAIA 650

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTAT       ++SI+P     +V+     +       LV  +K                
Sbjct: 651 PTATSGKSVSATESIEPIVDLYFVE-----EGIQTLPSLVPNIK---------------- 689

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                       + +  +   + I    +IE A+ RQ++IDQ+QSLNLY  +P S K+L 
Sbjct: 690 ------------NNRAYYERCWAIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAKELW 737

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              + A  +GLKT YY+++   ++ E   +   
Sbjct: 738 DDIQYAMDLGLKTLYYMKT-PKSNFELEEVCES 769


>gi|260448267|gb|ACX38689.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
          Length = 701

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 311/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|193071023|ref|ZP_03051951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218696272|ref|YP_002403939.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|192955681|gb|EDV86156.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218353004|emb|CAU98820.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli 55989]
          Length = 714

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 315/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASSEYFSQYLQGNWQPKTTKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|240849860|ref|YP_002971248.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
 gi|240266983|gb|ACS50571.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
          Length = 716

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 191/725 (26%), Positives = 306/725 (42%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     IEEG   ++L   + DF  +   
Sbjct: 36  FDMDRLAARQYFLQHVNQNTVFFHNLK----EKIDYLIEEGYYEKVL-FELYDFSFIKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQGNK---ALA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 148 ESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNAKIRKKKISARVFFQTLAEIQFESGYPYILFEDTANRSN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S + E               CNLGS+N+         +      T+
Sbjct: 383 RISMSNLCSEILQVSEASELETDLTYRTIGSDISCNLGSMNIA-----KAMESPDFGQTV 437

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +AVR L  V D+ N   +    K N    AIGLG M     L    I Y SPEA++  +
Sbjct: 438 ESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTN 497

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDE 735
                +++HAI AS  +A+E +  +S F+ S +  G F    I         L+ E+   
Sbjct: 498 IYFYIVTYHAIRASNLIARERQEMFSGFEKSAYADGRFFEKYIEKEWKPQFALVQELFAR 557

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    +  W ELKK V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 558 NNIVIPDQKDWQELKKLVIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRK-- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N           +  A+EI P  
Sbjct: 616 ----------------------EGKIGRVYYPAPYMDNTNL------NFYQDAYEIGPEK 647

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 648 IIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQVA-LSGT 706

Query: 915 TLKGV 919
            + G 
Sbjct: 707 EVDGC 711


>gi|315298702|gb|EFU57956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
          Length = 701

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 185/743 (24%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------EYFCRYIEEGV 264
           +Y  + A   +  L        + K ++A    M               +     + EG 
Sbjct: 2   DYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMTTHVRPNCVAFSSQQQRLNWLVNEGY 58

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +       D V       +   F F  +LG    Y  Y L   +G R  E      
Sbjct: 59  YDESVLNRYSR-DFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRV 117

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 118 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 174

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 175 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA   
Sbjct: 235 LGARQGAGAVYLHAHHPDILRFLDKKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMA 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+
Sbjct: 295 LFSPYDVERVYGKPFADVAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPY 352

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 353 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA 410

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L
Sbjct: 411 -----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYL 465

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +
Sbjct: 466 AREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYL 525

Query: 727 --------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 526 QSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHA 585

Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 586 TSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE---------------------------- 617

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G
Sbjct: 618 ---NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 674

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 675 IKTLYYIRLRQMA-LEGTEIEGC 696


>gi|209920119|ref|YP_002294203.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|293448993|ref|ZP_06663414.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|331678653|ref|ZP_08379327.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|209913378|dbj|BAG78452.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|291322083|gb|EFE61512.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|324120034|gb|EGC13911.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331073483|gb|EGI44804.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
          Length = 714

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASSEYFSQYLQGNWQPKTTKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|78355160|ref|YP_386609.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217565|gb|ABB36914.1| ribonucleoside-diphosphate reductase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 745

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/635 (26%), Positives = 288/635 (45%), Gaps = 86/635 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHF 351
           +L  RY+    +G  +E     F RVA  +A +E +        ++ A EFY+L++S+ F
Sbjct: 19  VLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYDLMTSWKF 78

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  AM+ K  GG G  ++ +R   
Sbjct: 79  LPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSFSRLRPAA 138

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 139 SRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEREGE 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FMK V +   + L +P                           
Sbjct: 199 ----FNNFNLSVALTEDFMKAVEKGEEYPLMAPHSGE----------------------- 231

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                   ++A  ++  ++   +E+G P I F D  N  +P    G + S+N C E  L 
Sbjct: 232 ----AKGTLNAREVFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNPCGEQPLL 287

Query: 592 SSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   CNLGS+NL   +        +  D+ +L   IR +VR LDNVID + + +++
Sbjct: 288 PYE----ACNLGSVNLAGLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDASRYPLDR 343

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             ++ H +R IGLG+MG+   L  L IPY S +AV++A   MEFI     +AS +LA+ER
Sbjct: 344 ITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAASKQLAKER 403

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + ++  S++ Q                                        RN+    
Sbjct: 404 GPFPAYAESVFGQRDL----------------------------------GPYRNATITT 429

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T++ + G S  ++P +   + +  M G+    VN +    LK    + E ++  +
Sbjct: 430 IAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQCYSEKLMEAV 489

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
               GS+  +E +P  ++ +  TA +I+P+W ++  +  Q++ D A S  +   +  +  
Sbjct: 490 -TQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNLPNSATID 548

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  IY  A+  G K     R     S    T  G
Sbjct: 549 DIRSIYWMAYERGCKGVTVYRDGCKQSQVLCTGDG 583


>gi|294496479|ref|YP_003542972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
 gi|292667478|gb|ADE37327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
          Length = 596

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/668 (25%), Positives = 290/668 (43%), Gaps = 94/668 (14%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLL 346
                G  +L  RY L    G   E P   F RVA  +A  ++    + EK   +FY ++
Sbjct: 15  RLSANGKTLLEKRYLLRDAEGKVAEEPGELFARVAKTIARVDSRYGYDVEKTEDDFYQVM 74

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+GT   QLS+CF+  V D L  IF +LQ+ +++ +  GG G  ++ 
Sbjct: 75  ADLEFLPNSPTLMNAGTELGQLSACFVLPVEDSLKSIFKSLQDMSLIHQSGGGTGFSFSN 134

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  +  TNG + G + F+ + +     + QGG+R+GA    L   H D+ EF+  +
Sbjct: 135 LRPKGDIVGSTNGVASGPLSFMTIFDKATDVIKQGGRRRGANMGVLRVDHPDIIEFIRAK 194

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
               +D     + N +  + D FM+ V+Q+  + L +P                      
Sbjct: 195 ----EDEELLRNFNLSVGVTDEFMEAVSQDRDYALINPRTGK------------------ 232

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    + +++ A  ++ +++T    TG P + F D  N R P   +G + S+N C 
Sbjct: 233 ---------IEKRLKAKDVFDRIVTCACRTGDPGLLFLDEINRRHPLSTIGTIESTNPCG 283

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E+ L         CNLGSINL         D++KL  T+ T V  LDNVID N + + + 
Sbjct: 284 EVPLLPYES----CNLGSINLAQMVKEGAIDWEKLKQTVHTGVHFLDNVIDANKYPLPQI 339

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +    +R IGLG+MGF + L  L IPY   E +  A++ M+F    ++  SVEL ++RG
Sbjct: 340 GQRTKQNRKIGLGVMGFAAMLARLGIPYDCREGIATAEKVMKFTQDESVQKSVELGEQRG 399

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           ++ +F  S   +  +P                                   MRN+    +
Sbjct: 400 SFPNFHRSALAR-DYPA----------------------------------MRNATVNTV 424

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +++ I   +  I+P +   Y ++ M    T ++       ++   +   ++ ++  
Sbjct: 425 APTGSLSIIANTTSGIEPMFALTYRRNVMGTRLTEIDPVFEEIARKHGFYSSQLMEEI-A 483

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
             GS+     IP+  ++I ATA EI P W +   +  QK +D A +  +    E + +  
Sbjct: 484 GTGSLQTSPNIPEQTRRIFATALEIQPRWHVRMQAAFQKHVDNAVAKTVNLPHEATVEDF 543

Query: 886 DFIYRQAWLMGLKTT--YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             +Y  A+ +  K    Y   S++   +E                   +    S G   +
Sbjct: 544 REVYMLAYRLKCKGIAAYRYGSKAEQVLEIG--------------NAGDKKAGSTGTVKA 589

Query: 944 CTSDTECE 951
           CT    CE
Sbjct: 590 CT-KNGCE 596


>gi|300957446|ref|ZP_07169659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300315802|gb|EFJ65586.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
          Length = 701

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 311/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFCFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|296104352|ref|YP_003614498.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058811|gb|ADF63549.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 714

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/750 (24%), Positives = 314/750 (41%), Gaps = 80/750 (10%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREV-LTTVYKKPQKAT------HHEMQCLYPEYFC 257
           ++  +++  P+Y  + A   L      +     +             +        E   
Sbjct: 5   TAERVMQATPDYHALNAMLNLYDREGRIQFGKDHDAVDAFFAAHVRPNSVTFASQDERLD 64

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             + EG     +  S  D   V    +  +   F F  +LG    Y  Y L   +G R  
Sbjct: 65  YLVNEGYYEERVL-SRYDRAFVVRLFERAHASGFRFQTFLGAWKYYTSYTLKTFDGKRYL 123

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +   + VA+ LA  +   E  A +    + S  F  +TPT  N G  +  +L SCFL
Sbjct: 124 ESFEDRVVMVALTLAQGD---EALAEQLMEEILSGRFQPATPTFLNCGKAQRGELVSCFL 180

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 181 LRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLED 240

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K  
Sbjct: 241 AFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLA 300

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +NA   LFSP ++  ++     +  I+    E  AD    K +  I+A   ++++  + 
Sbjct: 301 KENADMALFSPYDIERIYGKAFGDVAISELYDELVADDRIRKKY--INARDFFQRLAEIQ 358

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCN 601
           FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+             +   CN
Sbjct: 359 FESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASTYDENLDYADIGKDISCN 416

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+      +  D      T+ TAVR L  V D++   ++   +  N    AIGLG 
Sbjct: 417 LGSLNIA-----HTMDSPDFGRTVDTAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 471

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y SPE ++  +     I++HA+  S+ LA+ER   ++ F+ S +  G
Sbjct: 472 MNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMMLARERNQRFAGFEQSRYASG 531

Query: 720 VFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +    + + E          +   +R  W +L+  V   G+ N N  A+ PT +
Sbjct: 532 EYFSQYLESDWQPKTEKVRALFARAGIVLPTREMWQQLRDDVMRHGIYNQNLQAVPPTGS 591

Query: 772 IANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++    +G       F+ NE                     
Sbjct: 592 ISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTNE--------------------- 630

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
                        ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++   
Sbjct: 631 ----------NLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 680

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R    +E + ++G 
Sbjct: 681 IYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 709


>gi|300922751|ref|ZP_07138840.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301327385|ref|ZP_07220634.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300420936|gb|EFK04247.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300846039|gb|EFK73799.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 701

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 186/731 (25%), Positives = 310/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPN 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|307314436|ref|ZP_07594041.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|306906004|gb|EFN36525.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|323377463|gb|ADX49731.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
          Length = 714

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/754 (24%), Positives = 316/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F   TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAVRGLTTVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|303238293|ref|ZP_07324829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
 gi|302594339|gb|EFL64051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
          Length = 778

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/669 (27%), Positives = 300/669 (44%), Gaps = 89/669 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE----KEKRAVE--FY 343
                  +++L  RY     NG  +E P+  FMRVA  +AL + +    KE +A+E  FY
Sbjct: 1   MNLTENAVKVLEKRYLSKDENGCLLEDPKGMFMRVAKAVALADKDFVSAKELKAIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  
Sbjct: 61  DMMLNLEFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRQKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K+  D      + N +  I + FM  V     + L  P                   
Sbjct: 181 SCKKDNSD----ITNFNISVGITEKFMSAVEAAGDYDLIDPHSGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          K++A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 222 ------------TVGKLNARYVFDIIIDMAWNNGEPGIIFLDRLNKDNVTPELGNIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL     N     + DYDKL +T R AV  LDNVID+N
Sbjct: 270 PCGEQPLLPYE----ACNLGSINLSLMIKNTDGVPEVDYDKLGNTARKAVHFLDNVIDVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +  +     R IGLG+MG+   L  L+I Y S +A+ +A++ M FI   +  AS+
Sbjct: 326 KYPLPEIDEMTRGTRKIGLGVMGWADMLCKLNIAYNSQKAIALAEKIMHFIQEESRKASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+++G +  +  S++                                       I +R
Sbjct: 386 ELAEKKGVFPHYDKSIYKD-----------------------------------LGIKIR 410

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+    IAPT T++ I GVS  I+P +   Y+++ M  D  +  + L  ++   D +   
Sbjct: 411 NATTTTIAPTGTLSIIAGVSSGIEPLFAISYIRNVMDNDELIEVNPLFKQIAVIDGFYSD 470

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
            +     + G+I     IP  ++ + AT+ +I P W ++  +  Q++ D A S  +   +
Sbjct: 471 ELMRRIANKGTIHGFPEIPKSVQSVFATSHDISPEWHVKMQAAFQRYTDNAVSKTVNLRN 530

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           E + + +  ++  A+    K     R  S   ++   +  V GK     V +      S+
Sbjct: 531 EATKEDVSEVFWHAYKTYCKGVTIYRDGSR-DLQVLNIGKVKGKEQEATVEE------SV 583

Query: 939 GIPSSCTSD 947
            IP+ C   
Sbjct: 584 EIPTKCIIP 592


>gi|317049231|ref|YP_004116879.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950848|gb|ADU70323.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 712

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 311/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHH----------EMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L        ++K  +ATH                  E     + EG 
Sbjct: 13  DYHALNA---MLNLYDADGRIQFEKDHEATHQFFLQHVAPNTVPFASAAERLRYLVAEGY 69

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  DF+ +   +D      F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 70  YEAEVL-NQYDFNFLCQLHDEADAWGFRFHTFLGAWKFYTSYTLKTFDGKRYLESFEQRA 128

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA      E  A E    + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 129 CMVALTLARG---NEALARELLAEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 185

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 186 ESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 245

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 246 LGARQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENREMA 305

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+    E  AD    K F  I     ++ +  + FE+G+P+
Sbjct: 306 LFSPYDVERIYGKAFGDISISEHYDEMLADDRIRKTF--IQPRDFFQTLAEIQFESGYPY 363

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+ 
Sbjct: 364 IMYEDSVNRSN--PIAGRINMSNLCSEILQVNSASEFHDDLSYRRVGKDISCNLGSLNIA 421

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   LA T+  AVR L  V D++  +++    + N    AIGLG M     L
Sbjct: 422 -----HAMDSRNLAQTVEVAVRALTAVSDMSEINSVPSVAEGNRRSHAIGLGQMNLHGYL 476

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS- 725
               + Y S EA++  +     +++HA+  S  LAQER  ++  F+ S +  G +     
Sbjct: 477 AREGMAYGSAEALDFTNLYFYCVTYHAVRTSNLLAQERKQSFDGFEKSTYASGAYFDKYS 536

Query: 726 -------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     +A++  +  +   S+  W  L+  V T G+ N N  AI PT +I+ I   
Sbjct: 537 ERAWQPRTARVAQLFADAGIALPSQADWQALRDAVMTHGLYNQNLQAIPPTGSISYINHA 596

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ N                             
Sbjct: 597 TSSIHPIVSRIEIRKEGKTGRVYYPAPFMTN----------------------------- 627

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
             D    +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G
Sbjct: 628 --DNLDFYQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKG 685

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    ++ + ++G 
Sbjct: 686 IKTLYYIRLRQMA-LQGTEVQGC 707


>gi|320198427|gb|EFW73029.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323183201|gb|EFZ68598.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
          Length = 714

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/753 (24%), Positives = 314/753 (41%), Gaps = 86/753 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +NA   LFSP +V  ++     +  I+ E+Y+      E    + ++A   ++++ 
Sbjct: 298 HLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 413

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AIG
Sbjct: 414 SCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRY 528

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               +    +          + E+     +   +R  W +L+  V   G+ N N  A+ P
Sbjct: 529 ASSEYFSQYLQGNWQPKTTKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++    +G       F+ NE                  
Sbjct: 589 TGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
                           ++  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 631 -------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 KAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|300815922|ref|ZP_07096146.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300531851|gb|EFK52913.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
          Length = 701

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 309/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPNF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +    +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|300930528|ref|ZP_07145924.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300461584|gb|EFK25077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
          Length = 701

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/730 (25%), Positives = 314/730 (43%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRISMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           ++                E K R ++  A                 + ++   ++  A+E
Sbjct: 598 IRK---------------EGKTRRVYYPA---------------PFMTNENLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|160931914|ref|ZP_02079307.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
 gi|156869251|gb|EDO62623.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
          Length = 812

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 174/670 (25%), Positives = 289/670 (43%), Gaps = 85/670 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVE 341
           R        L +L  RY +    G  IE  +  F RVA  +A  +       + E  A  
Sbjct: 58  RTMELSKNALTVLERRYLIKNGEGVVIETVEELFRRVAGAIAASDRRYDENADCEALADS 117

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY ++++  F+ ++PTL N+G    QLS+CF+  V D + GIF  +++ A++ K  GG G
Sbjct: 118 FYRMMTNLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFETIKQAALIHKSGGGTG 177

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ E
Sbjct: 178 FSFSRLRPCGSAVNSTGGVASGPISFMKVFNMATEAVKQGGTRRGANMGILRVDHPDIME 237

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  + N  +      + N +  + + FM  V     + L  P                 
Sbjct: 238 FIHCKTNNKE----ITNFNISVGLTEKFMNAVEAGKDYELVDPHGG-------------- 279

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V   ++A  ++  ++   +  G P I F D  N  +     G + S
Sbjct: 280 -------------RVTGTLNAREVFECIVDAAWHNGEPGIIFLDRLNRDNVVPKAGEIES 326

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL            FD+DKL +T + AV  LDNVID
Sbjct: 327 TNPCGEQPLLPYES----CNLGSINLTKMLREENGVYSFDWDKLKATAKKAVHFLDNVID 382

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + +++        R +GLG+MG+  AL  L IPY S +AV +A+  M  ++      
Sbjct: 383 ANKYPLKEIDFMTKQTRKVGLGVMGWADALLRLKIPYNSEQAVRLAETVMRAVTEAGREE 442

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ RG +  F+ S  DQ                                     + 
Sbjct: 443 SRELAKARGTFPLFQESTLDQ------------------------------------ELP 466

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLW 816
            RN+    IAPT T++ +   S  ++P +  +Y+++ M G +   VN  L   L++R L+
Sbjct: 467 QRNATVTTIAPTGTLSLLASCSSGVEPIFGYVYIRNIMDGTEMIEVNPILREVLEERGLY 526

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL- 875
            + ++  +    GS+  IE IP++++++  +A E+ P + I   +  Q+  D A S  + 
Sbjct: 527 SDELMKKI-AKQGSLEGIEEIPEEIRRVFVSAHEVSPEFHIRMQAAFQRHTDNAVSKTVN 585

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           + +  + +++  +Y+ A+ +G K     R  S +    +  K         P     +  
Sbjct: 586 FCNSATREEVAEVYKLAFRLGCKGVTIYRDGSRSEQVLNIGKVKKDGQEESPAEGGQAVI 645

Query: 936 HSLGIPSSCT 945
                P   T
Sbjct: 646 KPRPRPDMTT 655


>gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa]
          Length = 403

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 273/403 (67%), Positives = 332/403 (82%), Gaps = 1/403 (0%)

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG
Sbjct: 1   IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLF
Sbjct: 61  KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDL+G  FE AY+ YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T
Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  +   D+ KL 
Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ + I YAS  AVE 
Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRT 741
           AD+SME I ++A  AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R   + ++R+
Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 360

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           SRL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P
Sbjct: 361 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403


>gi|315061956|gb|ADT76283.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli W]
          Length = 701

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/731 (25%), Positives = 310/731 (42%), Gaps = 81/731 (11%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F   TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPN 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++    +G       F+ NE                                  ++  A+
Sbjct: 598 IRKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAY 626

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R  
Sbjct: 627 EIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQM 686

Query: 909 TSVEKSTLKGV 919
             +E + ++G 
Sbjct: 687 A-LEGTEIEGC 696


>gi|161502143|ref|YP_001569255.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863490|gb|ABX20113.1| hypothetical protein SARI_00166 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 705

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 190/743 (25%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAVDAFFAAHVRPHSVTFASQDERLDTLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V       +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAIL-ARYDRAFVLSLFGHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIQNQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELLADSHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI   +S+                 CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYIHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNFYFYTITWHALHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|146966|gb|AAA24223.1| ribonucleoside diphosphate reductase B1 subunit precursor
           [Escherichia coli]
          Length = 776

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 155/657 (23%), Positives = 270/657 (41%), Gaps = 45/657 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++   ++              LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKATASL----------RPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + VA  L      E  +    FY+ +S+F     TP +    T   Q SSC L    D L
Sbjct: 174 ILVAACLFSNYPREGLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSL 233

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK--VANDTAVAV 438
             I               G+    +        +       + +    +     D+  + 
Sbjct: 234 DSINATSSAIVKYVSQRAGIA---STPGVFVRWVARFAVVKRSIPAAFRSTTFPDSGESC 290

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           ++    +     +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 291 SRRCAGRRCGNVFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 350

Query: 499 WTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 351 ITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAS 406

Query: 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           TG  +I   D C   SP    +  V  SNLC EI         +N  + E A+C L + N
Sbjct: 407 TGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 466

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A       + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   
Sbjct: 467 LGAIN-----NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYY 521

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+ 
Sbjct: 522 LAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY 581

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             +           T +L   + K+ V           A+ P+ T + I   +  I+
Sbjct: 582 KKIWIPSLMSRCITTGKLCVSQSKRTVCVTP----TLSALMPSETSSQISNATNGIE 634


>gi|116754614|ref|YP_843732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
 gi|116666065|gb|ABK15092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
          Length = 688

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 196/773 (25%), Positives = 321/773 (41%), Gaps = 124/773 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +I   DG ++ F+  R+   + +A + L  V  K              +  +L   ++  
Sbjct: 15  RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEK--------------TPVELAGRVVDV 60

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  E     + +   ++ +  EVL              +   Y +    YI     
Sbjct: 61  VDERFRDE-----IPSVEDVQDIVEEVL--------------IDAGYAQVAKAYI----- 96

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRV 324
                      ++    + L    D       +++L  RY      G+ +E P   F RV
Sbjct: 97  ----LYRQRRSEIREAKHYLGVADDLKLSVNAIEVLKKRYLKRDEFGNVVETPGEMFERV 152

Query: 325 AMGLALKETEKEKRA----VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           A  ++  E   E  A     +F +++ S  F+ ++PTL N+G    QLS+CF+  V D +
Sbjct: 153 ASAVSAVERRYEGDADDARKKFLSMMRSLSFLPNSPTLMNAGLPLGQLSACFVVPVEDSI 212

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF AL+  A++ +  GG G  ++ +R  G  +  T G + G + F+++ +     + Q
Sbjct: 213 AGIFDALKYMALIHQSGGGTGFSFSRLRPKGDVVRSTGGIASGPVSFMRIFDAATDVIKQ 272

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R+GA    L   H D+ EF+  +   G D     + N +  I + FM++  ++    
Sbjct: 273 GGRRRGANMGILRVDHPDITEFIACKDRGGMD-----NFNISVAITEEFMRQCERDGSVE 327

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L +P                                  ++SA  L   M T  +  G P 
Sbjct: 328 LINPRTGE---------------------------ATGEMSARDLMVMMATYAWRRGDPG 360

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + F D  N   P    G++ ++N C E  L         CNLGS+NL       +  +D+
Sbjct: 361 VVFIDRINALHPVP--GIIEATNPCGEQPLLPFES----CNLGSVNLSRMVERGEISWDR 414

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+R AVR LD+VID N   +++ + +    R IGLG+MGF   L  L + YAS +A+
Sbjct: 415 LEETVRLAVRFLDDVIDANRFPLKQIEDATLRTRKIGLGVMGFAEMLIQLGVSYASQDAL 474

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            IA+E M FI+  A   S  L +ERG++  F+ S   +                      
Sbjct: 475 RIAEELMAFITKTAREESCALGRERGSFPLFEESSLKK---------------------- 512

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD          MRN+    IAPT TI+ I G S  I+P +   +V+  + G   
Sbjct: 513 -----WDA---------MRNATVTTIAPTGTISIIAGTSSGIEPLFAVSFVRHVLEGARL 558

Query: 801 VVNSFLVNELK-QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           + +S L   +  +R +   A+ +++    GSI  I  IPDD+K++  TA +I P   +  
Sbjct: 559 IESSPLFERMASERGIMTPALRAEV-ARRGSIQEIPGIPDDIKELFLTALDISPEQHVRI 617

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  QK  D A S  + L E  S   +  +YR A+ +G K     R  S   V
Sbjct: 618 QAAFQKHTDNAVSKTVNLPEKASVSDVIKVYRLAYELGCKGITVYRYGSREQV 670



 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FDPS+ISRAI KAF A+        + +   + ++ ++           
Sbjct: 15  RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEKTPVELAGRVVDVVDE--------RFR 66

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +ED+QD VE  L+ +G+ ++ + Y+LYR+ RS++R A+ +
Sbjct: 67  DEIPSVEDVQDIVEEVLIDAGYAQVAKAYILYRQRRSEIREAKHY 111


>gi|332702239|ref|ZP_08422327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552388|gb|EGJ49432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 744

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/638 (27%), Positives = 305/638 (47%), Gaps = 85/638 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHF 351
           +L  RY     +G+ +E  Q  F RVA  +A +E +  K        A EFY+L++SF F
Sbjct: 22  VLRKRYLRKGPDGNPVEDVQGMFWRVASAIASEEVKYAKSSFDVDRLAREFYSLMTSFRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF ++++ A++ K  GG G  ++ +R  G
Sbjct: 82  LPNSPTLMNAGTELGQLAACFVLPVGDSMEDIFASVRDAALIHKSGGGTGFSFSRLRREG 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+K+ N     V QGG R+GA    L   H D+ +F+  ++  G+
Sbjct: 142 ARVGSTGGVASGPVSFMKIFNTATEQVKQGGTRRGANMGILRVDHPDILKFISCKEREGE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                ++ N +  + + FM+ V  +  ++L +P    +                      
Sbjct: 202 ----LNNFNISVALTEKFMQAVEADEEYSLIAPQNGQEDG-------------------- 237

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                  ++ A  ++  ++   +E+G P I F D  N  +P    G + S+N C E  L 
Sbjct: 238 -------RLRAREVFALLVRKAWESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL   +   +++  D+D+       AVR LDNVID + + ++K  +
Sbjct: 291 PYE----ACNLGSINLATIYDPNSDDGIDWDEFKRITHLAVRFLDNVIDASRYPLDKITE 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +   +R IGLGLMG+   L  L +PY S EA+ + ++ M+F+   + +AS  LA+ERGA+
Sbjct: 347 TVGRNRKIGLGLMGWADLLFQLRVPYNSQEALILGEKVMKFLQAESKAASKILAEERGAF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIA 767
           +++  S +                                     K +G  RN+    IA
Sbjct: 407 AAYDESTYAD-----------------------------------KKVGPYRNATTTTIA 431

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I G S  I+P +   + ++ M G+  V  N +    L++ + + +A++ D+  
Sbjct: 432 PTGTLSIIAGCSSGIEPLFALSFTRNVMDGEKLVEANPYFEQALRETESYSKALMEDV-A 490

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
             GSI ++E +PDD++++  TA +++P + ++  +  QK+ D A S  + L    S + +
Sbjct: 491 KKGSIAHMELLPDDIRRVFVTAHDVEPTYHLKMQAAFQKFTDNAVSKTVNLPSSASEEDI 550

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             IY  A+ MG K     R     S    T +    K 
Sbjct: 551 REIYWMAYEMGCKGVTVYRDGCKASQVLCTGEAEAKKA 588


>gi|311741197|ref|ZP_07715021.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303367|gb|EFQ79446.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 720

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 182/758 (24%), Positives = 313/758 (41%), Gaps = 79/758 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHH 246
           + T L  +    ++ E          +L  L            RE     + +       
Sbjct: 1   MSTQLGKTVAEPVKPEEQLDYHALNAML-NLYDANGKIQFEKDREAANQFFLQHVNQNTV 59

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
               L  E     I        + E   DF  +       Y   F F  +LG    Y  Y
Sbjct: 60  YFHDL-EEKIDYLINNKYYDPQVIE-QYDFSFIKELFKRAYSYKFRFKSFLGAYKYYTSY 117

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
            L     R  + + F  RV+M            A    + + +  F  +TPT  N+G  +
Sbjct: 118 TLKTFDGRRYL-ERFEDRVSMTALFLADGDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQ 176

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GV
Sbjct: 177 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGV 236

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 237 IPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIV 296

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD+  +   +N    LFSP +V  ++     +  +  E+YE   +   I+  +KI+A  
Sbjct: 297 VPDITFELAKRNDDMYLFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARH 354

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I F+D  N  +P +    ++ SNLC+EI   +S+ E        
Sbjct: 355 FFQTVAELQFESGYPYIMFEDTVNRANPVKTS-WINMSNLCSEILQVNSASEFNADLTYE 413

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+         D    A+T+ TA+R L  V D     ++   ++ N 
Sbjct: 414 ELGSDISCNLGSLNIAM-----TMDSPDFANTVETAIRGLTAVADKTSIDSVPSVRRGND 468

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER   ++ 
Sbjct: 469 ESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARERGEYFTE 528

Query: 711 FKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           F  S +  G F               + E+ D  +++  S   W++LK+ V   G+ N N
Sbjct: 529 FPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQEVAKHGLYNRN 588

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P    + ++                         E  I 
Sbjct: 589 LQAVPPTGSISYINNSTSSIHPIASKIEIRK------------------------EGKIG 624

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
            + Y          + +D  +    ++EI    ++++ +   K++DQ  SL L+  D  +
Sbjct: 625 RVYYPA------PHMDNDNLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTAT 678

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 679 TRDVNRAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 715


>gi|324020304|gb|EGB89523.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
          Length = 701

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/730 (25%), Positives = 308/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPNF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +    +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|323946353|gb|EGB42382.1| ribonucleotide reductase [Escherichia coli H120]
          Length = 701

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/730 (25%), Positives = 308/730 (42%), Gaps = 79/730 (10%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++  
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGK 307

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +  I+ E+Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +  
Sbjct: 308 PFADIAIS-EHYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN-- 363

Query: 574 QHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKL 621
              G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    
Sbjct: 364 PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPNF 418

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA+
Sbjct: 419 ARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEAL 478

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAE 731
           +  +     I++HA+  S+ LA+ER   ++ FK S +    +    +          + E
Sbjct: 479 DFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGE 538

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + +
Sbjct: 539 LFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEI 598

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +    +G       F+ NE                                  ++  A+E
Sbjct: 599 RKEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYE 627

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R   
Sbjct: 628 IGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA 687

Query: 910 SVEKSTLKGV 919
            +E + ++G 
Sbjct: 688 -LEGTEIEGC 696


>gi|304398690|ref|ZP_07380562.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304353901|gb|EFM18276.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 712

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/695 (25%), Positives = 297/695 (42%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + E      +  +  DFD +   +++  +  F F  +LG    Y  Y L   +
Sbjct: 58  AERLRYLVAESYYEADVL-NQYDFDFLLELHEVAEKWGFEFKTFLGAWKYYTSYTLKTFD 116

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +     VA+ LA  +   E  A      + S  F  +TPT  N G +   +L
Sbjct: 117 GKRYLETFEQRACMVALTLAQGD---ETLARALLEEILSGRFQPATPTFLNCGKQQRGEL 173

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 174 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVM 233

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 234 KMLEDAFSYANQLGARQGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDI 293

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     +  I+ +  E  AD    K +  I     ++ 
Sbjct: 294 TFQLAKENRPMALFSPYDVERIYGQAFGDISISEKYDEMLADDRIRKTY--IQPRDFFQT 351

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E            
Sbjct: 352 LAEIQFESGYPYIMYEDSVNRSN--PIAGRINMSNLCSEILQVNSASEYHDDLSYRRIGK 409

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+      +  D   LA T+  AVR L +V  ++   ++    + N    A
Sbjct: 410 DISCNLGSLNIA-----HAMDSRDLARTVDVAVRALTSVSMMSEIGSVPSVAEGNRRSHA 464

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I+++A+  S +LAQE    +  F  S
Sbjct: 465 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYCITYYALRTSNQLAQEHQKTFEGFADS 524

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  GV+    +      R E          +   ++  W  L+  V   G+ N N  AI
Sbjct: 525 QYASGVYFDKYLQREWLPRTERVTTLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAI 584

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ NE                
Sbjct: 585 PPTGSISYINHATSSIHPIVSPIEIRKEGKTGRVYYPAPFMTNE---------------- 628

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                             ++  A++I P  +I++ +   + +DQ  SL L+  D+ + + 
Sbjct: 629 ---------------NLHLYQDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRD 673

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    ++ + ++G 
Sbjct: 674 INKAQIYAWKKGIKTLYYIRLRQMA-LQGTEVQGC 707


>gi|146312796|ref|YP_001177870.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319672|gb|ABP61819.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Enterobacter sp. 638]
          Length = 705

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/689 (25%), Positives = 298/689 (43%), Gaps = 73/689 (10%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-E 315
            + EG     +     D   V    +  +   F F  +LG    Y  Y L   +G R  E
Sbjct: 57  LVSEGYYEERVLT-RYDRPFVLNLFERAHASGFRFQTFLGAWKYYTSYTLKTFDGKRYLE 115

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT 374
             +     VA+ LA  +   E  A +  + + S  F  +TPT  N G  +  +L SCFL 
Sbjct: 116 SFEDRVCMVALTLAQGD---ENLAEQLMDEMLSARFQPATPTFLNCGKAQRGELVSCFLL 172

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D 
Sbjct: 173 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDA 232

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   
Sbjct: 233 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAK 292

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +NA   LFSP ++  ++     +  I+    E  AD    K F  I+A   ++ +  + F
Sbjct: 293 ENAEMALFSPYDIERIYGKPFGDVTISELYDELVADDRVRKKF--INARDFFQTLAEIQF 350

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNL 602
           E+G+P+I ++D  N  +     G ++ SNLC+EI               + + +   CNL
Sbjct: 351 ESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASTYDENLDYAHTGKDISCNL 408

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+      +  D      T+ TA+R L  V D++   ++   +  N    AIGLG M
Sbjct: 409 GSLNIA-----HTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIETGNAASHAIGLGQM 463

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720
                L    I Y SPE ++  +     I++HA++ S+ LA+ER   ++ F+ S +  G 
Sbjct: 464 NLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTSMMLARERNQRFAGFEKSRYASGE 523

Query: 721 FPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    +    + + E          +   +R  W +L+  V T G+ N N  A+ PT +I
Sbjct: 524 YFNQYLENSWQPKTEKVRALFARAGVTLPTREMWQQLRDDVMTFGIYNQNLQAVPPTGSI 583

Query: 773 ANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++    +G       F+ NE                      
Sbjct: 584 SYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTNE---------------------- 621

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYR 890
                       ++  A+EI P  +I++ +   K +DQ  SL L + D  + + ++    
Sbjct: 622 ---------NLALYQDAYEIGPEKIIDTYAEATKHVDQGLSLTLFFPDTATTRDINKAQI 672

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 673 HAWKKGIKTLYYIRLRQLA-LEGTEIEGC 700


>gi|197264971|ref|ZP_03165045.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243226|gb|EDY25846.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 705

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|300859088|ref|YP_003784071.1| ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686542|gb|ADK29464.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206795|gb|ADL11137.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331349|gb|ADL21543.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277041|gb|ADO26940.1| Ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis I19]
          Length = 719

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/744 (23%), Positives = 305/744 (40%), Gaps = 80/744 (10%)

Query: 211 EKEPNYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++ +Y  + A   L            RE     + +           L  E     +E 
Sbjct: 16  TEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQHVNQNTVFFHDL-EEKIEYLVEN 74

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQA 319
                 + E   +F  +       Y   F F  +LG    Y  Y L     R  +E  + 
Sbjct: 75  NYYEPGIIEK-YEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFED 133

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
               VA+ LA  +   +  A    + + +  F  +TPT  NSG  +  +  SCFL  + D
Sbjct: 134 RVCMVALTLADGD---QNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIED 190

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    
Sbjct: 191 NMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYA 250

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 251 NQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 310

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++     +  ++ E+Y    +   I+  + I+A   ++ +  + FE+G+
Sbjct: 311 MYLFSPYDVERVYGKAFADISVS-EHYAEMVEDPRIRKSK-INAREFFQTIAEIQFESGY 368

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G V+ SNLC+EI   ++              E   CNLGS+N
Sbjct: 369 PYIMFEDTVNKAN--PIEGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLN 426

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI TA+R L  V +    +++   +K N    AIGLG M    
Sbjct: 427 IAM-----TMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHG 481

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-- 722
            L   HI Y S E ++  +     + +  + AS +LA+ER   +  F+ S +  G +   
Sbjct: 482 YLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDG 541

Query: 723 ------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                       +A++  + ++   +   W +LK  V   G+ N    A+ PT +I+ I 
Sbjct: 542 FDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYIN 601

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 602 HSTSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PH 631

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + ++     A A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  
Sbjct: 632 MDNENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRK 691

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY+R R    +  + ++G 
Sbjct: 692 GIKTLYYIRLRQVA-LMGTEVEGC 714


>gi|168233768|ref|ZP_02658826.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470517|ref|ZP_03076501.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456881|gb|EDX45720.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332204|gb|EDZ18968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 705

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNIYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|206889365|ref|YP_002249440.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206890598|ref|YP_002249390.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741303|gb|ACI20360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742536|gb|ACI21593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 584

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/624 (27%), Positives = 297/624 (47%), Gaps = 78/624 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK----RAVEFYNL 345
             F      +L  RY L    G  IE P+  F RV+  +A  E   +K       +F+ L
Sbjct: 1   MIFTDRAKTVLEIRYLLKNEKGEPIENPEQLFQRVSSYIAQAEKIYKKNSFEWEEKFHEL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +SS  F+ ++P L N+G    QL++CF+  + D +  IF  L++ A++ +  GG G +++
Sbjct: 61  ISSLRFLPNSPALMNAGKPKAQLAACFVLPIEDSIESIFKTLKDAALILQSGGGTGFNFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G + F+K+ +  +  + QGG R+GA    L   H D+ EF+ +
Sbjct: 121 SLRPKGDVVRSTGGVASGPVSFMKIFDKASDIIKQGGARRGANMGVLRVDHPDIFEFIRI 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++          + N +  + D FM+ + +N  + L +P                     
Sbjct: 181 KRIE-----SLSNFNISVAVTDSFMEALFKNDYFPLINPRTKE----------------- 218

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V RK+ A  ++ +++   +ETG P + F D  N  +P  H+G + S+N C
Sbjct: 219 ----------VVRKVKAKDIFDEIVESAWETGDPGVIFIDTINRSNPTPHIGQIDSTNPC 268

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGS+NL  +    + D+++L   ++TA R LD+ ID+  + + +
Sbjct: 269 GEQPLLPYE----ACILGSLNLSKYVKEGKIDFERLEHDVKTATRFLDDAIDVTHYPVPE 324

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K +  +R IGLG+MG+   L  L IPY   +A+ +A++ M+FIS  +  AS ELAQER
Sbjct: 325 VEKMHKGNRKIGLGIMGWADCLVELGIPYNHKKALALAEQVMQFISEKSHKASQELAQER 384

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +FKGS+W++                                   K I MRN+    
Sbjct: 385 GVFPNFKGSVWEK-----------------------------------KGIPMRNATTTT 409

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT TI+ I   S  I+P +   Y +  +  +F ++N +L+   +++  + E  I+ L+
Sbjct: 410 IAPTGTISIIADCSSGIEPYFLLAYKQRILDTEFEIINKYLIEIAQKQGFYSEDFINQLR 469

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-K 884
              G++  ++ +P  +K++  TA EI P   I+  +  QK+ D A S  + L + + K  
Sbjct: 470 -QKGTLRGMKEVPLRIKRLFKTALEITPEEHIQMQASFQKYTDNAVSKTINLSQRTRKED 528

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908
           +  I+  A+  GLK     R  S 
Sbjct: 529 VARIFILAYKKGLKGITIFRYGSK 552


>gi|168464073|ref|ZP_02697990.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|238909578|ref|ZP_04653415.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|195633333|gb|EDX51747.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 705

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|254293197|ref|YP_003059220.1| ribonucleotide-diphosphate reductase subunit alpha [Hirschia
           baltica ATCC 49814]
 gi|254041728|gb|ACT58523.1| ribonucleoside-diphosphate reductase, alpha subunit [Hirschia
           baltica ATCC 49814]
          Length = 621

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 210/680 (30%), Positives = 312/680 (45%), Gaps = 103/680 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L   G      Q  F RVA   A    +  + A   Y+
Sbjct: 35  IDESRDELLTEFGKKTLTDRYILPGEG-----YQEMFARVAEAYA----DDAEHAQRIYD 85

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W
Sbjct: 86  YMSRLWFMPATPVLSNGGAGRGLPISCFLNDVNDSLDGIVETWNENVWLASNGGGIGTYW 145

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  I    GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 146 GNVRSIGETIGN-AGKTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLE 204

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  +  + L SP    ++              
Sbjct: 205 IRKPSGDFNRKSLNLHHGLNISDAFMEAVKNDEEFGLISPKTGEEV-------------- 250

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQHVGV-VHS 581
                        +KI+A  LW+K+L +  +TG P++ + D  N      Q+ +G+ V  
Sbjct: 251 -------------KKINARKLWQKILEVRIQTGEPYLIYSDTVNNAMPAHQRQLGMKVKQ 297

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC+EI L++  +      TAVC L S+N        + D + L    R    VL + I
Sbjct: 298 SNLCSEIMLHTGLDHLGNDRTAVCCLSSVNAEKFL-EWKNDENFLEDIFRFLDNVLQDFI 356

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +A  S    R++GLGLMG  S L  +++P  S  A    +   + I   + +
Sbjct: 357 DRAPPEMARAAYSATRERSVGLGLMGMHSFLQSMNVPMESATAKSWNNMIFKHIRRGSDA 416

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV+LA+ERG     +      GV                                    
Sbjct: 417 ASVKLAKERGPCPDAEEC----GVMA---------------------------------- 438

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ MAIAPTA+I+ IC G S  I+P   N+Y    +SG FTV N  L   L+ +  
Sbjct: 439 --RFSHKMAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPHLEKVLEAKGK 496

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             + + + +   +GS+  ++ + +  K    TAFEID  WLIE A+ R  +I QAQSLNL
Sbjct: 497 NTDGIWAIILEAEGSVQGLDFLDEHEKATFRTAFEIDQRWLIELAADRTPYICQAQSLNL 556

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  GLK+ YY RS+S   V++++  G + K+    +  P+  
Sbjct: 557 FLPADIDKWDLHMLHWSAWEKGLKSLYYCRSKS---VQRASFAGAEDKVKVEGMDTPD-- 611

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                     T   EC  CQ
Sbjct: 612 ----------TDYDECLACQ 621


>gi|161615702|ref|YP_001589667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365066|gb|ABX68834.1| hypothetical protein SPAB_03487 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 714

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|330994650|ref|ZP_08318573.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758291|gb|EGG74812.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 599

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 214/685 (31%), Positives = 308/685 (44%), Gaps = 101/685 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L +RY L       E  Q  F RVA             A   Y+
Sbjct: 1   MDHSRDALLTAFGKATLDNRYLLPG-----ESYQDLFGRVASYYGA----DAAHAQRLYD 51

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 52  YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 111

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 112 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 170

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ T GD  R+  +++    +PD FM+ V  +  W L SP +                 
Sbjct: 171 LRRPTGGDPNRKALNLHHGVLVPDAFMRAVADDDEWALLSPKD----------------- 213

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVH 580
                       V RK+SA ALW ++LT   E G P+I F D  N   P+ H   G  V 
Sbjct: 214 ----------NTVIRKVSARALWIRILTARMEQGEPYIIFSDHVNNARPEHHKLAGLEVK 263

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC EITL +  ++     TAVC L S+NL         ++      I   +  LDNV
Sbjct: 264 TSNLCAEITLPTGMDQHGRERTAVCCLSSLNL-----ETWEEWKDNPQFIEDVMLFLDNV 318

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     +E+A+ +    R++GLG+MGF S L   ++P+ S  A        + I 
Sbjct: 319 LQDFIDRAPDDMERARYAAMRERSVGLGVMGFHSFLQANNVPFESVVAKGWNRRIFKHIR 378

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A +AS +LA+ERG          D GV                               
Sbjct: 379 AQADAASRKLAEERGPCPD----AADYGVME----------------------------- 405

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L
Sbjct: 406 -------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLL 458

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R      + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  ++ QA
Sbjct: 459 TERGQNTSEVWSSITLNKGSVQHLDFLTRQEKDVFKTAFELDQRWVIEHAADRAPYVCQA 518

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K  L  I+  AW  G+K+ YY RS S    +       DG+       
Sbjct: 519 QSINIFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSIQRAD----AVSDGQEKRDLSH 574

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
                      P++ T   EC  CQ
Sbjct: 575 REGEDAAGTAGPATTTDYEECLACQ 599


>gi|56414766|ref|YP_151841.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363694|ref|YP_002143331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205360153|ref|ZP_02834878.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|56129023|gb|AAV78529.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197095171|emb|CAR60720.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205340774|gb|EDZ27538.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 714

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|206895118|ref|YP_002246867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737735|gb|ACI16813.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 796

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/669 (27%), Positives = 298/669 (44%), Gaps = 87/669 (13%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSS 348
            L++L  RY L   NG+ +E P+    RVA GLA  ET              +F+++L  
Sbjct: 9   ALRVLEQRYLLRDENGNIVETPEQLMHRVAHGLAQIETVWGATSEQISSVEQDFFDILWK 68

Query: 349 FHFMCSTPTLFNSG-------TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
             F+ +TPTLF++G            +S+C +  + D + GIF  L + A + +  GG+G
Sbjct: 69  RDFLPNTPTLFHAGLPKDPKYRGRRFMSACIVLPIEDSIDGIFKTLWDAAKIMQAGGGVG 128

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G+ +  + GKS G + F+ + +     V QGGKR+GA    L   H D+ E
Sbjct: 129 YAFSRLRPKGSLVKSSGGKSSGPVSFMHIYDVMVDVVAQGGKRRGAQMGVLNVHHPDILE 188

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+D +K     +   H+ N +  + + F++   ++  + L +P                 
Sbjct: 189 FIDAKKENTSGQGPLHNFNISVAVTEEFVQAYKEDTTFKLVAPHTGE------------- 235

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                         V  +++A  +  K+    + TG P I F D  N        G + +
Sbjct: 236 --------------VVGELNAREVMHKIAENAWRTGDPGIIFIDRINQLDYLDD-GRIEA 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           Q+D++K   TIR AVR LDNVI+
Sbjct: 281 TNPCGEQPLPPYGS----CNLGSINLKHMLKKTDSGYQWDWEKFQRTIRLAVRFLDNVIE 336

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + I + +      R IGLG+MG+  AL LL IPY S EA+E A +   F+   +  A
Sbjct: 337 ANDYPIPELEDYAKKARRIGLGVMGWADALSLLGIPYDSEEALEEARKVGAFLKEKSHLA 396

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELAQERG +  +  S                               W EL      I 
Sbjct: 397 SQELAQERGVFEFYDQSK------------------------------WKEL-----GIP 421

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN+    IAPT T++ +  V+  I+P +   + +   +G F  V   L++ LK+R+L+ 
Sbjct: 422 MRNAAVTTIAPTGTLSILANVNSGIEPYFALAFERKITAGTFHEVQPTLLDVLKERELYS 481

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E ++  +  ++G + ++E +P+D++    TA E+ P W +   +  Q+ ID + S  + L
Sbjct: 482 EELVQRIIENEGKLRDLEDLPEDIRNAFPTAMEVAPEWHVRMQAAWQENIDSSISKTVNL 541

Query: 878 DEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
              S  + ++ IY  A+ +G K+    R +S      +       + ++    +P     
Sbjct: 542 PYQSTVEDIENIYLLAYELGTKSITVYRDKSLELQVLNVPSTSPKERSSEETQEPRPKRI 601

Query: 937 SLGIPSSCT 945
               P   T
Sbjct: 602 FPKRPEVLT 610


>gi|205360490|ref|ZP_02684058.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349046|gb|EDZ35677.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 714

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|194451930|ref|YP_002046770.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205359377|ref|ZP_02669536.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194410234|gb|ACF70453.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205336552|gb|EDZ23316.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 714

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGETFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|145296528|ref|YP_001139349.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum R]
 gi|140846448|dbj|BAF55447.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 715

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 295/717 (41%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E      ++ +   DF  +       Y  
Sbjct: 39  REAANQYFLQHVNQNTVFFHNL-QEKIDYLVENKYYDPIVLDK-YDFQFIKDLFKRAYGF 96

Query: 290 DFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ +LG    Y  Y L     R  +E  +     VA+ LA  +      A    + +
Sbjct: 97  KFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDRP---LAENLVDEI 153

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 154 MSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 213

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 214 NLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDT 273

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  I  E+Y
Sbjct: 274 KRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERIYGKPFADISIT-EHY 332

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   D   I+  + I+A   ++ +  + FE+G+P+I ++D  N  +     G +  SNLC
Sbjct: 333 DEMVDDDRIRKSK-INARQFFQTLAEIQFESGYPYIMYEDTVNASN--PIEGRITHSNLC 389

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+  E               CNLGS+N+         D      TI TA+R L 
Sbjct: 390 SEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAM-----AMDSPNFEKTIETAIRGLT 444

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +     ++   +K N    AIGLG M         H+ Y S EA++  +     + +
Sbjct: 445 AVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLY 504

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPID--------SIGLLAEVRDELAMNRTSR 743
             + AS ++A ER   + +F+ S +  G +  D            + E+  +  ++  + 
Sbjct: 505 QCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTV 564

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 565 EDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK---------- 614

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  +    A+EI    +I++ +  
Sbjct: 615 --------------EGKIGRVYYPA------PHMDNDNLEYFEDAYEIGYEKIIDTYAVA 654

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 655 TKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEVDGC 710


>gi|320087213|emb|CBY96979.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 705

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|327394923|dbj|BAK12345.1| ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [Pantoea
           ananatis AJ13355]
          Length = 693

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/695 (25%), Positives = 302/695 (43%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310
            E     + EG     +  +  DF+ V   +D      FAF  +LG    Y  Y L   +
Sbjct: 39  AERLRYLVAEGYYEASVL-NQYDFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +     VA+ LA  +   E  A      + S  F  +TPT  NSG +   +L
Sbjct: 98  GKRYLETFEQRACMVALTLAQGD---EPLARSVLEAILSGRFQPATPTFLNSGKQQRGEL 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KMLEDAFSYANQLGARQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     +  I+ +  E  AD    K +  I     ++ 
Sbjct: 275 TFQLAKENQPMALFSPYDVERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E            
Sbjct: 333 LAEIQFESGYPYIMYEDSVNRDN--PIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+      +  D   LA T+ TA+R L  V D++   ++    + N    A
Sbjct: 391 DISCNLGSLNIA-----HAMDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     ++++A+ AS +LA+E +  +  F  S
Sbjct: 446 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSAS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    +    + R         +  ++      W  L++ V   G+ N N  AI
Sbjct: 506 TYATGAYFDKYLQSDWQPRTARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAI 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 566 PPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMTN----------------- 608

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                         D  +++  A++I P  +I++ +   + +DQ  SL L+  D+ + + 
Sbjct: 609 --------------DNLELYQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    ++ + ++G 
Sbjct: 655 INKAQIYAWKKGIKTLYYIRLRQMA-LQGTEIQGC 688


>gi|303245840|ref|ZP_07332122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
 gi|302492623|gb|EFL52491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
          Length = 743

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/636 (26%), Positives = 289/636 (45%), Gaps = 83/636 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHF 351
           +L  RY     +G   E  ++ F RVA  +A  E          E  A  FY+L++   F
Sbjct: 22  VLAKRYLQKGPDGEPTEDARSLFWRVATAIAAMEAHYDKSPFTPEALARAFYDLMTGMRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 82  LPNSPTLMNAGAPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   +
Sbjct: 142 SRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFITCKERENE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + + FM+ V +   + L  P +                         
Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLVDPRD------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V    +A  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L 
Sbjct: 233 --KRVVGSQNAAEVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGSINL   F   A +  D+  L  T+  AVR LDNVID + + +++  +
Sbjct: 291 PYE----ACNLGSINLSVFFDPEAEDGIDWKGLTETVHLAVRFLDNVIDASRYPLDQITE 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MGF   L+LL IPY S EA+ +A++ ME I   A SAS  LA ERG +
Sbjct: 347 MVRANRKIGLGIMGFADLLYLLRIPYDSTEALSLAEKVMETIQGEARSASKTLAAERGPF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            ++  S++ +                                        RN+    IAP
Sbjct: 407 PAYAESVFGKRNL----------------------------------GPYRNATTTTIAP 432

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + +  M G+  V  N   V  +++   + E+++ ++   
Sbjct: 433 TGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANPHFVAAMQEAGAYSESLMEEV-TR 491

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
            GSI +I  +P++L+ +  TA +I+P+W ++  +  QK+ D A S  +   ++ + + + 
Sbjct: 492 KGSIAHIGMLPEELRDVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNKATKEDIR 551

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            IY  A+ +G K     R          T +G   +
Sbjct: 552 EIYWLAYELGCKGVTVYRDGCKAGQVLCTGEGGQAE 587


>gi|16766118|ref|NP_461733.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|585859|sp|Q08698|RIR3_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|49258467|pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258468|pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258469|pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258470|pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|109157244|pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157245|pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|1184247|emb|CAA51699.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421356|gb|AAL21692.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|267994923|gb|ACY89808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|321223604|gb|EFX48669.1| Ribonucleotide reductase of class Ib aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332989684|gb|AEF08667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 714

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|189485391|ref|YP_001956332.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287350|dbj|BAG13871.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 767

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/636 (27%), Positives = 288/636 (45%), Gaps = 82/636 (12%)

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK---- 337
            +L  E     E   L +L  RY     +G+ IE P+  F RVA  +A  +   ++    
Sbjct: 7   EELISENKVNLENNALTVLKKRYLKKDKDGNVIESPEDLFYRVAENIAQADKIYDEDTDI 66

Query: 338 --RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
                EFY  +SS  F+ ++PTL N+G    QLS+CF+  + D +  IF  L+  A++ K
Sbjct: 67  TILIREFYLTMSSCDFLPNSPTLMNAGRHLQQLSACFVLPIDDSMDSIFETLKNTALIHK 126

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG G  ++ +R     +  T+G S G I F++V N    A+ QGG R+GA    L   
Sbjct: 127 SGGGTGFSFSRLRPKKDVVRTTSGISSGPISFMQVFNAATEAIKQGGTRRGANMGMLRID 186

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ +F+  +    D     ++ N +  I   FM  + +   + L++P           
Sbjct: 187 HPDILDFIICK----DKDDSLNNFNISVAITKKFMDALEKGEYYNLYNP----------- 231

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                               +  +++A  ++ K++   ++ G P I F D  N ++    
Sbjct: 232 ----------------RNGVIIGRLNANEVFGKIVDQAWKNGEPGIVFVDRMNHKNTTPS 275

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G + S+N C E  L         CNLGSINL     NN  +++KL  T++TAV  LDNV
Sbjct: 276 AGSIESTNPCGEQPLLPYES----CNLGSINLGHFVKNNDVNWEKLEKTVKTAVHFLDNV 331

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID++ + I+K  +   ++R IGLG+MG+   L  L IPY S +++ +A+E M FI   + 
Sbjct: 332 IDVSNYPIQKIGEVTRSNRKIGLGIMGWADLLLYLGIPYGSNDSLALAEELMGFIHSKSR 391

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA +RG++ +FK S++ +G                                    
Sbjct: 392 KASEELAFKRGSFPNFKKSIYAKGS----------------------------------- 416

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQR 813
             +RN+    IAPT TI  I   S  I+P +  +Y +     + +   VN +     K+ 
Sbjct: 417 -PVRNATTTTIAPTGTIGMIASASSGIEPIFALVYKRMQCLDNEEMYEVNPYFEKLAKEN 475

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             +   +I  +    GSI   + IP+ +KKI  T+ +I P   I+  +  QK+ D A S 
Sbjct: 476 GFYSPELIDKIS-EKGSIRGFKEIPEKIKKIFVTSHDIAPEEHIKMQAAFQKFTDNAVSK 534

Query: 874 NL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + + +  + + +  +Y  ++ MG K     R  S 
Sbjct: 535 TVNFPNSATKEDVKKVYILSYKMGCKGVTVYRDGSR 570


>gi|291618544|ref|YP_003521286.1| NrdE [Pantoea ananatis LMG 20103]
 gi|291153574|gb|ADD78158.1| NrdE [Pantoea ananatis LMG 20103]
          Length = 712

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/695 (25%), Positives = 302/695 (43%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-IN 310
            E     + EG     +  +  DF+ V   +D      FAF  +LG    Y  Y L   +
Sbjct: 58  AERLRYLVAEGYYEASVL-NQYDFNFVCGLHDEADAWGFAFKTFLGAWKYYTSYTLKSFD 116

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +     VA+ LA  +   E  A      + S  F  +TPT  NSG +   +L
Sbjct: 117 GKRYLETFEQRACMVALTLAQGD---ETLARSVLEAILSGRFQPATPTFLNSGKQQRGEL 173

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 174 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVM 233

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 234 KMLEDAFSYANQLGARQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDI 293

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++     +  I+ +  E  AD    K +  I     ++ 
Sbjct: 294 TFQLAKENQPMALFSPYDVERIYGQAFGDISISEKYAEMLADDRIRKTY--IQPRDFFQT 351

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E            
Sbjct: 352 LAEIQFESGYPYIMYEDSVNRDN--PIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGK 409

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+      +  D   LA T+ TA+R L  V D++   ++    + N    A
Sbjct: 410 DISCNLGSLNIA-----HAMDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHA 464

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     ++++A+ AS +LA+E +  +  F  S
Sbjct: 465 IGLGQMNLHGYLAREGITYGSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSAS 524

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    +    + R         +  ++      W  L++ V   G+ N N  AI
Sbjct: 525 TYATGAYFDKYLQSDWQPRTARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAI 584

Query: 767 APTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 585 PPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMTN----------------- 627

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                         D  +++  A++I P  +I++ +   + +DQ  SL L+  D+ + + 
Sbjct: 628 --------------DNLELYQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRD 673

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+KT YY+R R    ++ + ++G 
Sbjct: 674 INKAQIYAWKKGIKTLYYIRLRQMA-LQGTEIQGC 707


>gi|167992528|ref|ZP_02573626.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205329296|gb|EDZ16060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|312913830|dbj|BAJ37804.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 705

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|148259751|ref|YP_001233878.1| ribonucleotide-diphosphate reductase subunit alpha [Acidiphilium
           cryptum JF-5]
 gi|146401432|gb|ABQ29959.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidiphilium
           cryptum JF-5]
          Length = 628

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/687 (30%), Positives = 312/687 (45%), Gaps = 101/687 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY +       E  Q  F RVA        +  + A   Y+
Sbjct: 26  IDRSRDSLLTEFGRATLNDRYLMPG-----ESYQDLFARVASYY----GDDAEHAQRLYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 77  YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF++
Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  R+  +++    + D FM+ V  +  W L SP + + +             
Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV------------- 242

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVH 580
                         R +SA +LW ++LT   ETG P+I F D  N   P+ H   G  V 
Sbjct: 243 --------------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC EITL +  +      TAVC L SINL         ++      I   +R LDNV
Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINL-----ETWLEWHDNPQFIEDVMRFLDNV 343

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I 
Sbjct: 344 LQDFIDNAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIR 403

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A +AS +LA+ERG                                             
Sbjct: 404 AGADAASRKLAEERGPCP------------------------------------------ 421

Query: 752 RVKTIGM--RNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                G+  R S+ MAIAPTA+I+ I G S   I+P   N++++  +SG F+V N  L  
Sbjct: 422 DAAEYGVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQ 481

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L  +   DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I 
Sbjct: 482 LLAAKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYIC 541

Query: 869 QAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q+QS+N++L     K  L  I+ QAW  G+K+ YY RS S    +  + K    +     
Sbjct: 542 QSQSINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAA 601

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                +    +   +S T+  EC  CQ
Sbjct: 602 NRTAPAPAPLVAAAASTTNYEECLACQ 628


>gi|194427894|ref|ZP_03060440.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|194414127|gb|EDX30403.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
          Length = 714

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/754 (24%), Positives = 315/754 (41%), Gaps = 88/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +      A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ATLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +       ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAVRINMSNLCSEILQVNSASEYDENLDYARTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPNFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 676

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 709


>gi|19553728|ref|NP_601730.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391369|ref|YP_226771.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326710|emb|CAF21192.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 715

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 295/717 (41%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E      ++ +   DF  +       Y  
Sbjct: 39  REAANQYFLQHVNQNTVFFHNL-QEKIDYLVENKYYDPIVLDK-YDFQFIKDLFKRAYGF 96

Query: 290 DFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ +LG    Y  Y L     R  +E  +     VA+ LA  +      A    + +
Sbjct: 97  KFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGD---RALAENLVDEI 153

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 154 MSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 213

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 214 NLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDT 273

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  I  E+Y
Sbjct: 274 KRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERIYGKPFADVSIT-EHY 332

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   D   I+  + I+A   ++ +  + FE+G+P+I ++D  N  +     G +  SNLC
Sbjct: 333 DEMVDDDRIRKTK-INARQFFQTLAEIQFESGYPYIMYEDTVNASN--PIEGRITHSNLC 389

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+  E               CNLGS+N+         D      TI TA+R L 
Sbjct: 390 SEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAM-----AMDSPNFEKTIETAIRGLT 444

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +     ++   +K N    AIGLG M         H+ Y S EA++  +     + +
Sbjct: 445 AVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLY 504

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPID--------SIGLLAEVRDELAMNRTSR 743
             + AS ++A ER   + +F+ S +  G +  D            + E+  +  ++  + 
Sbjct: 505 QCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTV 564

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 565 EDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK---------- 614

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  +    A+EI    +I++ +  
Sbjct: 615 --------------EGKIGRVYYPA------PHMDNDNLEYFEDAYEIGYEKIIDTYAVA 654

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 655 TKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEVDGC 710


>gi|301159372|emb|CBW18890.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|323131163|gb|ADX18593.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 714

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 HDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|326403281|ref|YP_004283362.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
 gi|325050142|dbj|BAJ80480.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
          Length = 628

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/687 (30%), Positives = 312/687 (45%), Gaps = 101/687 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY +       E  Q  F RVA        +  + A   Y+
Sbjct: 26  IDRSRDSLLTEFGRATLNDRYLMPG-----ESYQDLFARVASYY----GDDAEHAQRLYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 77  YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF++
Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  R+  +++    + D FM+ V  +  W L SP + + +             
Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKDGAHV------------- 242

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVH 580
                         R +SA +LW ++LT   ETG P+I F D  N   P+ H   G  V 
Sbjct: 243 --------------RSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC EITL +  +      TAVC L SINL         ++      I   +R LDNV
Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINL-----ETWLEWHDNPQFIEDVMRFLDNV 343

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I 
Sbjct: 344 LQDFIDSAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIR 403

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A +AS +LA+ERG                                             
Sbjct: 404 AGADAASRKLAEERGPCP------------------------------------------ 421

Query: 752 RVKTIGM--RNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                G+  R S+ MAIAPTA+I+ I G S   I+P   N++++  +SG F+V N  L  
Sbjct: 422 DAAEYGVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQ 481

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L  +   DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I 
Sbjct: 482 LLAAKGRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYIC 541

Query: 869 QAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q+QS+N++L     K  L  I+ QAW  G+K+ YY RS S    +  + K    +     
Sbjct: 542 QSQSINVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAA 601

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                +    +   +S T+  EC  CQ
Sbjct: 602 NRTAPAPAPLVAAAASTTNYEECLACQ 628


>gi|207858076|ref|YP_002244727.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|206709879|emb|CAR34232.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 714

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  +   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYNRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|310816081|ref|YP_003964045.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754816|gb|ADO42745.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 718

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/684 (25%), Positives = 288/684 (42%), Gaps = 70/684 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     ++EG     + E               +   F F  +LG    Y  Y L   +
Sbjct: 64  AEKLDYLVDEGYYEAEVLEQYST-PFKESIWAQAWAHKFRFSTFLGAFKYYTSYTLKTRD 122

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G+R  E  +   + VA+ LA      E  A    + + +  F  +TPT  N+G +   +L
Sbjct: 123 GNRYLERFEDRVVMVALALARG---NEVLARRIVDEVLTGRFQPATPTFLNAGKKSRGEL 179

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL    D++  I   +     L+K  GG+    + +R  GA I G   +S GVIP +
Sbjct: 180 VSCFLLRFEDNMESIGRGINSALQLSKRGGGVALLLSNLREAGAPIKGIANQSSGVIPVM 239

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 240 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDI 299

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +    NA   +FSP +V  +      +  I+   Y+   D        K+ A   ++ 
Sbjct: 300 TFELAKNNADMYMFSPHDVEKVTGKAFGDISISEHYYDFVDDPRIH--KTKMKARQFFQT 357

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G ++ SNLC+EI   +S               
Sbjct: 358 LAEVQFESGYPYILFEDTANRAN--PIDGRINMSNLCSEILQVNSPSVLNEDLTFADIGS 415

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+     N       +   + TA+R L  V +++   ++   +  N    A
Sbjct: 416 DISCNLGSLNVAKVIDNG-----DIGVAVETAIRALTAVSEMSAIDSVPSVRAGNDRSHA 470

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           IGLG M     L    I Y SPEA++        ++FHAI+AS ++A ER   +  F+ S
Sbjct: 471 IGLGQMNLHGFLARERIHYDSPEALDFTRAYFAAVAFHAINASNKIAVERNETFDGFEKS 530

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +          + EV ++  +   S   W  LK+RV   G+ N N  AI
Sbjct: 531 RYADGSFFDMYLEESFAPTSDKVREVLEKFGVALPSVADWGALKERVMKDGLFNRNLQAI 590

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 591 PPTGSISYINHATASIHPVAAKVEIRK------------------------EGKIGRVYY 626

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                     + ++  + +  A+EI P  +I+  +   + +DQ  SL L + D  + + +
Sbjct: 627 PA------PYLTNENAEYYRDAYEIGPEAIIDLYAEATRHVDQGLSLTLFFPDTATTRDI 680

Query: 886 DFIYRQAWLMGLKTTYYLRSRSAT 909
           +     AW  G+KT YY+R R A 
Sbjct: 681 NKAQIYAWKKGIKTIYYIRLRQAA 704


>gi|194445580|ref|YP_002042052.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404243|gb|ACF64465.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 714

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + + Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDRDQQAIDAFFAAHVCPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|184200806|ref|YP_001855013.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
 gi|183581036|dbj|BAG29507.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
          Length = 719

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/765 (24%), Positives = 311/765 (40%), Gaps = 85/765 (11%)

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
              T    Y GL   +L   L      L + E N      R    +         +    
Sbjct: 8   EDPTCPEQYRGLGYHELNALL-----NLYDAEGNIQFEADRQAARQ-----YFLQHVNKN 57

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQI 300
               H+++    E     ++       + E     + +   +   Y   F F  +LG   
Sbjct: 58  TVFFHDLE----EKLKYLVDHQYYEAEVLEKYS-VEFIKELSKQAYGYKFRFQTFLGAFK 112

Query: 301 LYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Y  Y L   +G R  E  +   + V++ LA  +   E  A      + S  F  +TPT 
Sbjct: 113 FYTSYTLKTFDGQRYLERFEDRVVMVSLYLADGD---ETLAKRLVGEIISGRFQPATPTF 169

Query: 359 FNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            N+G  +  +L SCFL    D++  I   +     L+K  GG+    T +R  GA I   
Sbjct: 170 LNAGKKQRGELVSCFLVRFEDNMESIGRNINSALQLSKRGGGVAFALTNLRESGAPIKMI 229

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R  
Sbjct: 230 ENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILNFLDTKRENADEKIRIK 289

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IPD+  +   +N    LFSP +V  ++ +   +  ++ E Y    D   I   
Sbjct: 290 TLSLGVVIPDITFELAKKNQDMYLFSPYDVERIYGMPFADVNVS-EKYHEMVDDSRITKT 348

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
           + I+A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S     
Sbjct: 349 K-INAREFFQTVAEVQFESGYPYIMFEDTVNRAN--PIDGKIIMSNLCSEILQVSEPSVY 405

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIE 644
                     +   CNLGS+N+     +  F      ++I TA+R L  V D+ N  ++ 
Sbjct: 406 NEDLTYAEVGKDISCNLGSMNIAMAMESPDF-----GASIETAIRGLTAVSDMSNIDSVP 460

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             ++ N    A+GLG M     L   H+ Y S E V+  +     +++HAI AS  +A+E
Sbjct: 461 SIRRGNQMSHAVGLGQMNLHGYLAKEHVFYGSEEGVDFTNMYFYAVTYHAIRASNLIAKE 520

Query: 705 R-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           R  ++  F+ S +  G +    I          + E+     +   +   W EL+++V  
Sbjct: 521 RGESFVGFEKSDYANGTYFDKYIDGTWEPATARVRELFARAGVALPTAQDWRELREKVMA 580

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GM N N  A+ PT +I+ I   + SI P    + ++           +  +N       
Sbjct: 581 DGMYNQNLQAVPPTGSISYINNSTSSIHPIASRIEIRKEGKLGRVYYPAPFMN------- 633

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                  D+  +    A+EI    +I++ +   + +DQ  SL L
Sbjct: 634 -----------------------DENLEYFQDAYEIGFEKIIDTYAAATQHVDQGLSLTL 670

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  D  + + ++     AW  G+KT YY R R    +E + ++G 
Sbjct: 671 FFKDTATTRDINRAQIYAWRKGIKTMYYSRIRQLA-LEGTEVEGC 714


>gi|322614369|gb|EFY11300.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621566|gb|EFY18419.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624427|gb|EFY21260.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626625|gb|EFY23430.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633515|gb|EFY30257.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638442|gb|EFY35140.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639745|gb|EFY36429.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643791|gb|EFY40341.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649477|gb|EFY45911.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655933|gb|EFY52233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661328|gb|EFY57553.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662526|gb|EFY58734.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666900|gb|EFY63075.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671270|gb|EFY67393.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677723|gb|EFY73786.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681450|gb|EFY77480.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683849|gb|EFY79859.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193762|gb|EFZ78965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197450|gb|EFZ82587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203265|gb|EFZ88294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205211|gb|EFZ90186.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212776|gb|EFZ97587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218082|gb|EGA02794.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221655|gb|EGA06068.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323230845|gb|EGA14963.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234804|gb|EGA18890.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238843|gb|EGA22893.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241543|gb|EGA25574.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248310|gb|EGA32246.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252924|gb|EGA36758.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256954|gb|EGA40663.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260571|gb|EGA44182.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264371|gb|EGA47877.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269505|gb|EGA52958.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 705

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LEGTEIEGC 700


>gi|205357273|ref|ZP_02346446.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322676|gb|EDZ10515.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 714

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     ++EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVQEGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENVQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|261225972|ref|ZP_05940253.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256770|ref|ZP_05949303.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK966]
          Length = 713

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 317/754 (42%), Gaps = 89/754 (11%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L +K  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAECLTQKTMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S     +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSVA-TPATPTFLNCGKQQRGELVS 176

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 177 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 236

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 237 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 296

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 297 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 354 AEIQFESGYPYIMYEDTVNRAN--PVAGRINMSNLCSEILQVNSASEYDENLDYARTGHD 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 412 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 467 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 526

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +        G + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 527 YASGEYFSQYLQGNWQPKTGKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 587 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 629

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
                            ++  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 630 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 675

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 676 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEIEGC 708


>gi|197249723|ref|YP_002147707.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197213426|gb|ACH50823.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 714

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 308/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAKMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y S EA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSSEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|194737455|ref|YP_002115763.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197301107|ref|ZP_02663780.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194712957|gb|ACF92178.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288514|gb|EDY27891.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 714

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|288933943|ref|YP_003438002.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|288888672|gb|ADC56990.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
          Length = 713

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/759 (24%), Positives = 317/759 (41%), Gaps = 92/759 (12%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY--------- 252
           +  ++   I    ++  + A   +  L        ++K ++A    M             
Sbjct: 1   MATTTAERITAAADFHALNA---MLNLYDSEGRIPFEKDRQAVEVFMTAQIQPNTLSFVS 57

Query: 253 -PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLH 308
             +     + EG     +      +D  ++     + R   F F  +LG    Y  Y L 
Sbjct: 58  QEDKLTWLVREGYYDPQVLAG---YDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALK 114

Query: 309 INGSRIEMPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
               +  + + F  R   VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G  +
Sbjct: 115 TFDGKHYL-EDFADRCVMVALTLAQGDDQQARQLMEE---MLSGRFQPATPTFLNAGKQQ 170

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV
Sbjct: 171 RGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGV 230

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P +K+  D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    
Sbjct: 231 VPVMKMLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVV 290

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAV 543
           IPD+  +   ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A 
Sbjct: 291 IPDITFQLAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRAR 347

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            L++++  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+          
Sbjct: 348 DLFQRLAEIQFESGYPYIMFEDTVNRAN--PVAGRITMSNLCSEILQVSTPSTYDENLSY 405

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
               E   CNLGS+N+      +  D    A TI TAVR L  V D++   ++      N
Sbjct: 406 AHIGEDISCNLGSLNIA-----HTMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGN 460

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               AIGLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++
Sbjct: 461 AASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFA 520

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +    +    + + E          +    R  W +L+  +   G+ N 
Sbjct: 521 GFEQSRYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDIMRYGIYNR 580

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ PT +I+ I   + SI P    + ++           +  +N             
Sbjct: 581 YLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN------------- 627

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
                            +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  
Sbjct: 628 -----------------NDNLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTA 670

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 671 TTRDINKAQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 708


>gi|317484384|ref|ZP_07943302.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
 gi|316924359|gb|EFV45527.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
          Length = 751

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/650 (25%), Positives = 295/650 (45%), Gaps = 90/650 (13%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVEFYNLLSSFH 350
           ++L  RY+    NG  +E     F RVA  +A +E + E         A  FY++++ + 
Sbjct: 19  KVLSKRYYRKDENGQCVEDATGLFWRVASSVAAEEAKYEQSPWKPDALARAFYDMMTDWR 78

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G+   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R  
Sbjct: 79  FLPNSPTLMNAGSELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPK 138

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G
Sbjct: 139 NSRVGTTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDILEFIRAKEQEG 198

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           +     ++ N +  I + FM+ V Q+  + L +P    +                     
Sbjct: 199 E----FNNFNLSVGITEAFMQAVEQDRDYALVNPASGKEQG------------------- 235

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                   +++A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L
Sbjct: 236 --------RLNAREVFNLLVDKAWQSGDPGIIFLDRINRDNPTPAQGEIESTNPCGEQPL 287

Query: 591 NSSSEETAVCNLGSINLLAHFA----------NNQFDYDKLASTIRTAVRVLDNVIDINC 640
                    CNLGS+NL + F           +   D+  +  TI  AVR LDNV+D + 
Sbjct: 288 LPYE----ACNLGSLNLSSFFVPGHLDETNPADRGIDWAGIERTIALAVRFLDNVVDASQ 343

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+  +    +R IGLG+MG+   L+ L IPY S +A+ +A+  M+FI     +AS++
Sbjct: 344 FPLERIAEQVRRNRKIGLGVMGWADLLYQLRIPYDSADAITLAERIMDFIETRGRAASIQ 403

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG + +++ S++     P                                   +RN
Sbjct: 404 LAAERGPFPAYETSVYPTKGIPP----------------------------------LRN 429

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEA 819
           +    IAPT T++ + G S  ++P +   + ++ M G+    VN      L++ D + + 
Sbjct: 430 ATITTIAPTGTLSILAGCSSGVEPLFALSFARNVMDGERLMEVNPHFEEALREIDCYSQP 489

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
           ++  +    GSI +++++P+DL+++  TA +I P W +   +  Q+  D A S  +   +
Sbjct: 490 LLEGV-AELGSIQSLDQLPEDLRRVFVTAMDIAPEWHLRMQAAFQRHTDNAVSKTVNLPN 548

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
             +   +  IY  A+  G K     R  S ++   +T            V
Sbjct: 549 SATRDDIFAIYWMAYEEGCKGVTVYRDGSKSTQVLTTSAPAAKPSEESQV 598


>gi|152964773|ref|YP_001360557.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151359290|gb|ABS02293.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
          Length = 720

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/741 (24%), Positives = 301/741 (40%), Gaps = 80/741 (10%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY---------FCRYIEEGV 264
           P+Y  + A   L     E         + A  + +Q + P               +E G 
Sbjct: 20  PSYHTLNAMLNLWD--EEGKIQFEADVEAARQYFLQHVNPRTRRFPTFEARLAHMVENGY 77

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
             + + +     D V    D  +   F F  +LG    Y  Y L       E  + F  R
Sbjct: 78  YEQHVLDQYSP-DFVRSLTDRAHAAKFRFATFLGAFKFYTSYALKSFDG-TEYLEGFEDR 135

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
             M         E  A    + + +  F  +TPT  N+G     +L SCFL  + DD+  
Sbjct: 136 AVMTALTLAVGDEALATAIVDEVIAGRFQPATPTFLNAGKASRGELVSCFLLRIEDDMES 195

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I   +     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G
Sbjct: 196 IGRGINSALQLSKRGGGVALLLSNIREYGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLG 255

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +    N    LF
Sbjct: 256 ARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEPMHLF 315

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP +V     +YGK F ++A   + R+    +     +I A   ++ +  + FE+G+P+I
Sbjct: 316 SPYDV---ERVYGKPFGDVAVSEHYREMVADDRIRKTQIDAREFFKTLAELQFESGYPYI 372

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +     G ++ SNLC+EI   ++              +   CNLGS+N+  
Sbjct: 373 VFEDTVNKAN--PIAGRINMSNLCSEILQVNTPSTLAEDLTYSEIGKDISCNLGSLNIAL 430

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D   L  ++ TAVR L  V +  +  ++      N    AIGLG M     L 
Sbjct: 431 -----AMDGGNLGQSVETAVRALTAVSVASDIQSVPSVAYGNSKSHAIGLGQMNLHGYLA 485

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI- 726
              + Y S E ++  +     + FHA+ AS  +A ER   +  F+ S +  G F    + 
Sbjct: 486 RERVHYGSEEGIDFTNVYFAAVLFHALRASNAIAIERGETFEGFENSKYADGTFFDKYLE 545

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    +A +  +  +   +R  W +LK  V   G+ N N  A+ PT +I+ I   +
Sbjct: 546 NDFLPATERVAGLFADAGIALPTRAEWAQLKASVVEHGIFNQNLQAVPPTGSISYINNST 605

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P    + ++                         E  +  + Y          + +
Sbjct: 606 SSIHPIASKIEIRK------------------------EGKLGRVYYPA------PFMTN 635

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 636 DNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIK 695

Query: 899 TTYYLRSRSATSVEKSTLKGV 919
           T YY+R R    +E + ++G 
Sbjct: 696 TIYYIRIRQMA-LEGTEVEGC 715


>gi|87198299|ref|YP_495556.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133980|gb|ABD24722.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 667

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/683 (31%), Positives = 315/683 (46%), Gaps = 106/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + ++ A   Y+ 
Sbjct: 77  DDSRDVNLTDFGKDTLDDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLYDY 127

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 128 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVATWNENVWLASRGGGIGTYWG 187

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 188 KVRGIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEI 246

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V   A + L SP + S                 
Sbjct: 247 RKPSGDFNRKALNLHHGVLLTDEFMEAVRDGAEFHLRSPKDGS----------------- 289

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 290 ----------VRSTVDARSLFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 339

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL         +++     +   +R LDNV  
Sbjct: 340 NLCSEITLPTGRDHLGNDRTAVCCLSSLNL-----ETWDEWNGDKRFVEDVLRFLDNVLQ 394

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++G+G+MGF S L    I + S  A     +  + ++  
Sbjct: 395 DYIDRAPDEMARAKYSAARERSVGMGVMGFHSFLQKKGIAFESAMAKAWNLKMFKHVAAK 454

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS+ LAQERGA         + GV                                 
Sbjct: 455 ADEASILLAQERGACPD----AAEMGVMQ------------------------------- 479

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L  
Sbjct: 480 -----RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLQKLLAD 534

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +      + + +  H GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 535 KSKDSTNVWNSILEHGGSVQHLDFLSVEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQS 594

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNLY+     K  L  ++ QAW  G+K+ YYLRS+S          G  G + A    D 
Sbjct: 595 LNLYIPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEA----DN 644

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
            +    + + ++ T   EC  CQ
Sbjct: 645 TAEAPKIELATAETDYEECLACQ 667


>gi|200387421|ref|ZP_03214033.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604519|gb|EDZ03064.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 714

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGIMLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|163867488|ref|YP_001608687.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           tribocorum CIP 105476]
 gi|161017134|emb|CAK00692.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           tribocorum CIP 105476]
          Length = 716

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/725 (26%), Positives = 305/725 (42%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     IEEG   + L   + DF  +   
Sbjct: 36  FDMDRLAARQYFLQHVNQNTVFFHNLK----EKIDYLIEEGYYEKAL-FELYDFSFIKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     V++ LA         A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICLVSLYLAQGNK---ALA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  A+     L+K  G
Sbjct: 148 ESFVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRAVNSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKQIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNAKIRKKKISARVFFQTLAEIQFESGYPYILFEDTANRSN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI   S + E               CNLGS+N+         +      T+
Sbjct: 383 RISMSNLCSEILQVSEASELETDLTYRTIGSDISCNLGSMNIA-----KAMESPDFGQTV 437

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +AVR L  V D+ N   +    K N    AIGLG M     L    I Y SPEA++  +
Sbjct: 438 ESAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTN 497

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDE 735
                +++HAI  S  +A+E +  ++ F+ S +  G F    I         L+ E+   
Sbjct: 498 IYFYIVTYHAIRVSNLIARERQEMFAGFEKSAYADGRFFEKYIEKEWKPQFALVQELFAR 557

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    +  W ELKKRV   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 558 NNIVIPDQKDWQELKKRVIKYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRK-- 615

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N           +  A+EI P  
Sbjct: 616 ----------------------EGKIGRVYYPAPYMDNTNL------NFYQDAYEIGPEK 647

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 648 IIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQVA-LSGT 706

Query: 915 TLKGV 919
            + G 
Sbjct: 707 EVDGC 711


>gi|300780545|ref|ZP_07090400.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
 gi|300533531|gb|EFK54591.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
          Length = 720

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/743 (24%), Positives = 308/743 (41%), Gaps = 75/743 (10%)

Query: 210 IEKEPNYAKVTARFLLE----KLR----REVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              + +Y  + A   L      ++    RE     + +           L  E     +E
Sbjct: 15  TADQLDYHALNALLNLYDENGHIQFDKDREAANQFFLQHVNQNTVYFHDL-EEKMNYLVE 73

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAF 320
                  + ++  D+D V       Y   F F+ +LG    Y  Y L     R  + + F
Sbjct: 74  NKYYEPDVIKA-YDWDFVKSTFKRAYAFKFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERF 131

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD 379
             RVAM         E+ A    + + +  F  +TPT  N+G  +  +L SCFL  + D+
Sbjct: 132 EDRVAMTALFLADGNEEIASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDN 191

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  A+  +  L+K  GG+    + +R  GA I     +S GVIP +K+  D+    N
Sbjct: 192 MESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYAN 251

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N   
Sbjct: 252 QLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDM 311

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  ++ +   +  +  E Y+   +   I+  + I A   ++ +  + FE+G+P
Sbjct: 312 YLFSPYDVERVYGVPFADISVT-EKYDEMVEDPRIRKTK-IKARQFFQTIAEIQFESGYP 369

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINL 607
           +I F+D  N  +P +  G ++ SNLC+EI                +      CNLGS+N+
Sbjct: 370 YILFEDHANRANPVK-TGRINMSNLCSEILQVNSASVLNEDLTYDTIGHDISCNLGSLNI 428

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    D D  + T+ TA+R L  V D     ++   ++ N    AIGLG M     
Sbjct: 429 AM-----AMDSDNFSRTVETAIRGLTAVADKTSIDSVPSVREGNDASHAIGLGQMNLHGY 483

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           L   HI Y S E ++  +     I +  + AS ++A E+   ++ F+ S +  G F    
Sbjct: 484 LGREHIEYGSEEGLDFTNAYFATIMYECLKASHKIAVEKGQRFAGFEDSEYASGEFFDRY 543

Query: 726 --------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                      + E+ D  +    S   W++LK  V   G+ N    A+ PT +I+ I  
Sbjct: 544 NPADFQPKTQRVKELFDGSSAQPPSAEEWEQLKADVARDGIYNRYLQAVPPTGSISYINN 603

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            + SI P    + ++                         E  I  + Y          +
Sbjct: 604 STSSIHPIASKIEIRK------------------------EGKIGRVYYPA------PHM 633

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
            ++       A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G
Sbjct: 634 DNENAGYFKDAYEIGFEKIIDTYAEATKYVDQGLSLTLFFKDTVTTRDINRAQIYAWRKG 693

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 694 IKTLYYIRLRQMA-LEGTEVEGC 715


>gi|332185596|ref|ZP_08387344.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
 gi|332014574|gb|EGI56631.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
          Length = 638

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/681 (31%), Positives = 315/681 (46%), Gaps = 97/681 (14%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++ + RD      G + L DRY L       E  Q  F+RVA   A    +  + A   Y
Sbjct: 45  EVDHARDARLTDFGKETLNDRYLLPG-----ESYQDLFVRVASAYA----DNAEHAQRLY 95

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N GT      SC+L +VPD L GI     EN  LA   GG+G  
Sbjct: 96  DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVPDSLDGIVTTWNENVWLASRGGGIGTY 155

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 156 WGQVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFL 214

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    IPD FM+ V   A W L SP                   
Sbjct: 215 EIRKPSGDFNRKALNLHHGVLIPDAFMEAVRDGAEWHLKSPKTGE--------------- 259

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A AL++K++     TG P+I F D  N   P+ H      V 
Sbjct: 260 ------------VRATVDARALFQKLVETRLATGEPYIVFADHVNKNMPKHHRELGLKVS 307

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +  +      TAVC L S+NL   +   + D   +   +R    VL + 
Sbjct: 308 TSNLCSEITLPTGLDHKGNDRTAVCCLSSLNLET-WDEWKDDKQFIEDVMRFLDNVLQDY 366

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID +   +E+A  S    R++GLG+MGF S L    +P+    A        + I+    
Sbjct: 367 IDRHEPGMERAAYSAARERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRMFKHINAQVN 426

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ LA ERG          D GV                                   
Sbjct: 427 QASMTLAAERGPCPD----AADVGVME--------------------------------- 449

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++ 
Sbjct: 450 ---RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLIEKS 506

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              +A+ + +  H GS+ +++ +  + K    T+FEID  WL+E A  R  +IDQAQSLN
Sbjct: 507 KNSDAVWNSILEHGGSVQHLDFLSPEEKDTFKTSFEIDQRWLLELAGDRTPYIDQAQSLN 566

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K  L  ++ +AW +G+K+ YYLRS+S   V+++   G  G      ++ P  
Sbjct: 567 LFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKS---VQRAGFAGSGGVEADNTISAPKF 623

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                      T   EC  CQ
Sbjct: 624 EIGET------TDYDECLACQ 638


>gi|290510979|ref|ZP_06550348.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
 gi|289775972|gb|EFD83971.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
          Length = 713

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/759 (24%), Positives = 317/759 (41%), Gaps = 92/759 (12%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY--------- 252
           +  ++   I    ++  + A   +  L        ++K ++A    M             
Sbjct: 1   MATTTAERITAAADFHALNA---MLNLYDSEGRIPFEKDRQAVEVFMTAQIQPNTLSFVS 57

Query: 253 -PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLH 308
             +     + EG     +      +D  ++     + R   F F  +LG    Y  Y L 
Sbjct: 58  QEDKLTWLVREGYYDPQVLAG---YDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALK 114

Query: 309 INGSRIEMPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
               +  + + F  R   VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G  +
Sbjct: 115 TFDGKHYL-EDFADRCVMVALTLAQGDDQQARQLMEE---MLSGRFQPATPTFLNAGKQQ 170

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV
Sbjct: 171 RGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGV 230

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P +K+  D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    
Sbjct: 231 VPVMKMLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVV 290

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAV 543
           IPD+  +   ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A 
Sbjct: 291 IPDITFQLAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRAR 347

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            L++++  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+          
Sbjct: 348 DLFQRLAEIQFESGYPYIMFEDTVNRAN--PVAGRITMSNLCSEILQVSTPSTYDENLSY 405

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
               E   CNLGS+N+      +  D    A TI TAVR L  V D++   ++      N
Sbjct: 406 AHIGEDISCNLGSLNIA-----HTMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGN 460

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               AIGLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++
Sbjct: 461 AASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFA 520

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +    +    + + E          +    R  W +L+  V   G+ N 
Sbjct: 521 GFEQSRYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNR 580

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ PT +I+ I   + SI P    + ++           +  +N             
Sbjct: 581 YLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN------------- 627

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
                            +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  
Sbjct: 628 -----------------NDNLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTA 670

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 671 TTRDINKAQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 708


>gi|206576590|ref|YP_002236985.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|206565648|gb|ACI07424.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
          Length = 713

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/759 (24%), Positives = 317/759 (41%), Gaps = 92/759 (12%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY--------- 252
           +  ++   I    ++  + A   +  L        ++K ++A    M             
Sbjct: 1   MATTTAERITAAADFHALNA---MLNLYDSEGRIPFEKDRQAVEVFMTTQIQPNTLSFAS 57

Query: 253 -PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLH 308
             +     + EG     +      +D  ++     + R   F F  +LG    Y  Y L 
Sbjct: 58  QEDKLTWLVREGYYDPQVLAG---YDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALK 114

Query: 309 INGSRIEMPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
               +  + + F  R   VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G  +
Sbjct: 115 TFDGKHYL-EDFADRCVMVALTLAQGDDQQARQLMEE---MLSGRFQPATPTFLNAGKQQ 170

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV
Sbjct: 171 RGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGV 230

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P +K+  D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    
Sbjct: 231 VPVMKMLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVV 290

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAV 543
           IPD+  +   ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A 
Sbjct: 291 IPDITFQLAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRAR 347

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            L++++  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+          
Sbjct: 348 DLFQRLAEIQFESGYPYIMFEDTVNRAN--PVAGRITMSNLCSEILQVSTPSTYDENLSY 405

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSN 650
               E   CNLGS+N+      +  D    A TI TAVR L  V D++   ++      N
Sbjct: 406 AHIGEDISCNLGSLNIA-----HTMDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGN 460

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               AIGLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++
Sbjct: 461 AASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFA 520

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +    +    + + E          +    R  W +L+  V   G+ N 
Sbjct: 521 GFEQSRYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNR 580

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ PT +I+ I   + SI P    + ++           +  +N             
Sbjct: 581 YLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN------------- 627

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
                            +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  
Sbjct: 628 -----------------NDNLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTA 670

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 671 TTRDINKAQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 708


>gi|209966732|ref|YP_002299647.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209960198|gb|ACJ00835.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodospirillum
           centenum SW]
          Length = 621

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/682 (31%), Positives = 297/682 (43%), Gaps = 108/682 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            + RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+ 
Sbjct: 35  DHSRDNLLTAFGKATLDDRYLLPG-----ESYQDLFARVASYYA----DDTAHAQRLYDY 85

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W 
Sbjct: 86  ISRLWFMPATPVLSNGGTDRGLPISCFLNEASDSLEGIVGLWNENVWLAAKGGGIGSYWG 145

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF+++
Sbjct: 146 NLRSIGERVK-GNGKTSGVIPFIRVMDSLTLAISQGSLRRGSAACYLPVWHPEIEEFVEM 204

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  R+  +++    IPD FM+ V  +  W L SP + + L              
Sbjct: 205 RRPTGGDPNRKALNLHHGVVIPDAFMRAVEADEDWKLVSPKDGATL-------------- 250

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHS 581
                        R +SA  LW ++LT   ETG P++ F D  N   P+ H   G  V  
Sbjct: 251 -------------RVVSARQLWIRILTARVETGEPYLLFIDHVNRAIPEHHKLAGLTVKM 297

Query: 582 SNLCTEITLNSSSE-----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC EITL +  +      TAVC L S+NL       Q     +  T+R    VL + I
Sbjct: 298 SNLCAEITLPTGLDPWGQQRTAVCCLSSLNLETFL-EWQDHPTFIEDTLRFLDNVLTDFI 356

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 + +AK +    R++GLG+MGF S L    +P     A          I   A +
Sbjct: 357 AKAPDEMARAKYAAMRERSVGLGVMGFHSFLQGQGVPIEGVMAKVWNKRIFAHIKRQADA 416

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ L  ERG                                                  
Sbjct: 417 ASLALGAERGPCP------------------------------------------DAAEY 434

Query: 757 G--MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G   R SN +AIAPTA+I+ IC G S  I+P   N Y    +SG ++V N +L   L++ 
Sbjct: 435 GGKERFSNKIAIAPTASISIICGGASPGIEPIAANAYTHKTLSGSWSVRNKYLEAVLERH 494

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              DE   S +  + GS+ +++ +  D K +  TAFEID  WLIE A+ R  +I Q+QSL
Sbjct: 495 GRNDEDTWSAITLNGGSVQHLDFLSQDEKDLFRTAFEIDQRWLIEHAADRTPFICQSQSL 554

Query: 874 NLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N++L     K  L  I+ QAW  G+K+ YYLRS S    E  +      K +  P     
Sbjct: 555 NVFLPADVHKRDLHQIHFQAWKKGVKSLYYLRSLSVQRAESESRPAAAAKPDTPPEPAK- 613

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                           EC  CQ
Sbjct: 614 --------------YEECLACQ 621


>gi|198245896|ref|YP_002216783.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940412|gb|ACH77745.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624541|gb|EGE30886.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 714

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 308/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++  
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEDC 709


>gi|205353757|ref|YP_002227558.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273538|emb|CAR38524.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628865|gb|EGE35208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 714

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  +   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYNRSFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSHYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|5230835|gb|AAD41036.1|AF112535_3 ribonucleotide reductase alpha-chain [Corynebacterium glutamicum]
 gi|21325302|dbj|BAB99923.1| Ribonucleotide reductase alpha subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 707

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 295/717 (41%), Gaps = 72/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E      ++ +   DF  +       Y  
Sbjct: 31  REAANQYFLQHVNQNTVFFHNL-QEKIDYLVENKYYDPIVLDK-YDFQFIKDLFKRAYGF 88

Query: 290 DFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ +LG    Y  Y L     R  +E  +     VA+ LA  +      A    + +
Sbjct: 89  KFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGD---RALAENLVDEI 145

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  NSG  +  +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 146 MSGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 206 NLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  I  E+Y
Sbjct: 266 KRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERIYGKPFADVSIT-EHY 324

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   D   I+  + I+A   ++ +  + FE+G+P+I ++D  N  +     G +  SNLC
Sbjct: 325 DEMVDDDRIRKTK-INARQFFQTLAEIQFESGYPYIMYEDTVNASN--PIEGRITHSNLC 381

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+  E               CNLGS+N+         D      TI TA+R L 
Sbjct: 382 SEILQVSTPSEFNDDLTYAEVGEDISCNLGSLNVAM-----AMDSPNFEKTIETAIRGLT 436

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +     ++   +K N    AIGLG M         H+ Y S EA++  +     + +
Sbjct: 437 AVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLY 496

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPID--------SIGLLAEVRDELAMNRTSR 743
             + AS ++A ER   + +F+ S +  G +  D            + E+  +  ++  + 
Sbjct: 497 QCLRASNKIATERGERFKNFENSKYATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTV 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 557 EDWAALKADVMEHGLFNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK---------- 606

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  +    A+EI    +I++ +  
Sbjct: 607 --------------EGKIGRVYYPA------PHMDNDNLEYFEDAYEIGYEKIIDTYAVA 646

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 647 TKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEVDGC 702


>gi|204929412|ref|ZP_03220486.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321131|gb|EDZ06331.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 714

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/743 (25%), Positives = 310/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     I EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLIREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +RG GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLRGAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-MEGTEIEGC 709


>gi|319899231|ref|YP_004159324.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
 gi|319403195|emb|CBI76754.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
          Length = 708

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/725 (25%), Positives = 302/725 (41%), Gaps = 77/725 (10%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     +EE    R L   + DF  +   
Sbjct: 28  FDMDRLAARQYFLQHVNQNTVFFHNLK----EKIDYLVEENYYEREL-FELYDFSFIKKL 82

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 83  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQGNK---VLA 139

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + +    F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 140 EGLVDEIIIGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGG 199

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL   H+D
Sbjct: 200 GVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLD 259

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 260 IMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPF 316

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 317 SDISLTEHYRSFVDNSKIRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANSI--AG 374

Query: 578 VVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLCTEI   S + E               CNLGS+N+     +N F       T+
Sbjct: 375 RISMSNLCTEILQVSEASELETDLTYRAVGNDISCNLGSMNIAKAMESNDF-----GKTV 429

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             AVR L  V D+ N   +    K N    AIGLG M     L    I Y +PEA++  +
Sbjct: 430 EIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLARERIYYGTPEAIDFTN 489

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------ 737
                +++HA+ AS  +A+E +  +  F+ S +  G F    I    + + EL       
Sbjct: 490 IYFYTVTYHALRASNLIARERQKMFVGFERSAYADGHFFTKYIEKEWKPQFELVQELFTR 549

Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   S+  W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++   
Sbjct: 550 NNIVIPSQKDWQELKQLVTQYGLYNRYLQAVPPTGSISYINHATSSIHPIASKIEIRK-- 607

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                                 E  I  + Y    + N         + +  A+EI P  
Sbjct: 608 ----------------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEK 639

Query: 856 LIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  +
Sbjct: 640 IIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQMA-LSGT 698

Query: 915 TLKGV 919
            + G 
Sbjct: 699 EVDGC 703


>gi|227488206|ref|ZP_03918522.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091776|gb|EEI27088.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 718

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/758 (24%), Positives = 311/758 (41%), Gaps = 88/758 (11%)

Query: 193 LSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +S   L+   + +   L + +     +  +  AR              +        H +
Sbjct: 13  MSGEQLDYHALNALLNLYDADGKIQFDKDRAAARQ---------FFLQHVNQNTVFFHNL 63

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFL 307
           Q    E     ++     + + E   +F+ +    D  Y   F F  +LG    Y  Y L
Sbjct: 64  Q----EKLDYLVDNDYYEKEVLEK-YNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTL 118

Query: 308 HI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
              +G R  E  +     VA+ LA  +   E  A    + +    F  +TPT  NSG  +
Sbjct: 119 KTFDGQRYLERFEDRVCMVALTLAAGD---ENLARNLVDEIILGRFQPATPTFLNSGKKQ 175

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV
Sbjct: 176 RGEPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGV 235

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    
Sbjct: 236 IPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVV 295

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPD+  +   +N    LFSP +V  ++     +  I+   YE   D        KI+A  
Sbjct: 296 IPDITFELAKKNDDMYLFSPYDVERVYGKAFADVSISEHYYEMVEDPRIH--KTKINARH 353

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------- 597
            ++ +  + FE+G+P+I ++D  N  +     G V  SNLC+EI   ++  E        
Sbjct: 354 FFQTLAEIQFESGYPYIMYEDTVNRAN--PIEGRVTQSNLCSEILQVATPSEYNADLSYA 411

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+         D    A+TI TA+R L  V +     ++   KK N 
Sbjct: 412 TVGEDISCNLGSLNIAM-----AMDSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGND 466

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   HI Y S EA++  +     + +  + AS ++A+ER   ++ 
Sbjct: 467 NAHAIGLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTK 526

Query: 711 FKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           F  S +  G F               +  + D   ++  +   W ELK+ V   G+ N  
Sbjct: 527 FDTSDYASGAFFDRYDPAEFAPKTDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRY 586

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P    + ++                         E  I 
Sbjct: 587 LQAVPPTGSISYINNSTSSIHPIASRIEIRK------------------------EGKIG 622

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
            + Y          + +D  +    A+EI    +I++ +   K++DQ  SL L+  D  S
Sbjct: 623 RVYYPA------PHMDNDNLEYFQDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTAS 676

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 677 TRDINRAQIYAWTHGIKTLYYIRLRQVA-LEGTEVEGC 713


>gi|57234550|ref|YP_181365.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57224998|gb|AAW40055.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 599

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/643 (26%), Positives = 291/643 (45%), Gaps = 85/643 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEF 342
           D        ++L  RY     NG  IE P+  F RVA  +A  E +        +   EF
Sbjct: 13  DVRLSTTAKRVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEF 72

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G 
Sbjct: 73  YQAMSRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGF 132

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  G  +      + G +  + + +  A  V QGG R+G   A L+  H D+ +F
Sbjct: 133 SFSNLRPAGDKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKF 192

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +     D     +   +  +   FM +V     + + +P                  
Sbjct: 193 ISCKG----DPNALTNFYISVVVTREFMTKVRSGEDYDIINPHTGE-------------- 234

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                        V ++++A  ++  ++   ++TG P + F D  N  +P   +G +   
Sbjct: 235 -------------VVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHV 281

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDI 638
           + C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+
Sbjct: 282 SGCGEQTLLPYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDV 337

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N     + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS
Sbjct: 338 NRFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRAS 397

Query: 699 VELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
            +LA+ RG++ +++GS++D  G  P                                   
Sbjct: 398 SKLAEARGSFPAYEGSIYDVPGGRP----------------------------------- 422

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLW 816
           MRN+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++    
Sbjct: 423 MRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFH 482

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + +   L   +  + ++E +PD LK++  TA  I P W I   +  QK+ D A S  + 
Sbjct: 483 SKELFEKLVSSN-HLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVN 541

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
              E + + +  ++  A+  GLK     R  S  +    T + 
Sbjct: 542 FSHEATREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSES 584


>gi|319404591|emb|CBI78197.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 716

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 190/720 (26%), Positives = 302/720 (41%), Gaps = 67/720 (9%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     IEE    R L   + DF  V   
Sbjct: 36  FDMDKLAARQYFLQHVNQNTVFFHNLK----EKIDYLIEEKYYEREL-FELYDFSFVKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA      +  A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQG---SKSLA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 148 EGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIEQVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNSKIRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRAN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI   S + E        AV N  S NL +       + D    T+  AVR
Sbjct: 383 RISMSNLCTEILQVSEASELETDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVR 442

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ N   +    K N    AIGLG M     L    I Y +PEA++  +     
Sbjct: 443 ALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREKIYYGTPEAIDFTNIYFYT 502

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNR 740
           +++HA+ AS  +A+ER   +  F+ S +  G F    I    + + EL         +  
Sbjct: 503 VTYHALRASNLIARERKEVFVGFEKSAYADGHFFTKYIEKEWKPQFELVQKLFTRNNIVI 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++        
Sbjct: 563 PNQKDWQELKQLVAQYGLYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRK------- 615

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N         + +  A+EI P  +I++ 
Sbjct: 616 -----------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTY 652

Query: 861 SRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  + + G 
Sbjct: 653 AVATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSLYYVRLRQMA-LSGTEVDGC 711


>gi|157148213|ref|YP_001455532.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157085418|gb|ABV15096.1| hypothetical protein CKO_04024 [Citrobacter koseri ATCC BAA-895]
          Length = 706

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/743 (24%), Positives = 312/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKA------THHEMQCLY----PEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K ++A      TH     +      E     + EG 
Sbjct: 7   DYHALNA---MLNLYDKAGHIQFDKDRQAVEVFFATHVRPNSVSFASQDERLEYLLREGY 63

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +     D   V       +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 64  YDESVLT-RYDRAFVVKLFAHAHASGFRFQTFLGAWKYYTSYTLKTFDGKRYLEDFEDRV 122

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA      E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 123 TMVALTLAQG---NEALAMQLTDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 179

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 180 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 239

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 240 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENAQMA 299

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V  ++     +  I+    E  AD    K +  I+A   ++++  + FE+G+P+
Sbjct: 300 LFSPYDVERIYGKPFGDIAISERYDELLADERVRKQY--INAREFFQRLAEIQFESGYPY 357

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLL 608
           I ++D  N  +     G ++ SNLC+EI   +S+                 CNLGS+N+ 
Sbjct: 358 IMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASTYDENLDYAQTGHDISCNLGSLNIA 415

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D      T+ TA+R L  V D++   ++   +  N    AIGLG M     L
Sbjct: 416 -----HTMDSPNFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYL 470

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y SPEA++  +     +++HA++ S+ +A+ER   ++ FK S +  G +    +
Sbjct: 471 AREGIAYGSPEALDFTNLYFYTVTWHALNTSMMMARERGKTFAGFKQSRYASGEYFEQYL 530

Query: 727 GLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               + + +          M    R  W  L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 531 QGDWQPKTDTVRALFARSGMTLPGREMWARLRDEVMRYGIYNQNLQAVPPTGSISYINHA 590

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 591 TSSIHPIVSKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 622

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 623 ---NLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 679

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YY+R R    +E + ++G 
Sbjct: 680 IKTLYYIRLRQLA-LEGTEIEGC 701


>gi|319407581|emb|CBI81231.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           1-1C]
          Length = 716

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/720 (26%), Positives = 302/720 (41%), Gaps = 67/720 (9%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F ++KL        +        H ++    E     IEE    R L   + DF  V   
Sbjct: 36  FDMDKLAARQYFLQHVNQNTVFFHNLK----EKIDYLIEEKYYEREL-FELYDFSFVKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 91  FKRAYAFRFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQGNKS---LA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 148 EGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKKIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKVRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIEQVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNSKIRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRAN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI   S + E        AV N  S NL +       + D    T+  AVR
Sbjct: 383 RISMSNLCTEILQVSEASELETDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVR 442

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ N   +    K N    AIGLG M     L    I Y +PEA++  +     
Sbjct: 443 ALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREKIYYGTPEAIDFTNIYFYT 502

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNR 740
           +++HA+ AS  +A+ER   +  F+ S +  G F I  I    + + EL         +  
Sbjct: 503 VTYHALRASNLIARERKEVFVGFEKSAYANGHFFIKYIEKEWKPQFELVQELFTRNNIVI 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++        
Sbjct: 563 PNQKDWQELKQLVAQYGLYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRK------- 615

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N         + +  A+EI P  +I++ 
Sbjct: 616 -----------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTY 652

Query: 861 SRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + +DQ  SL L + D  + + ++     AW  G+K+ YY+R R    +  + + G 
Sbjct: 653 AVATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSLYYVRLRQMA-LSGTEVDGC 711


>gi|324014405|gb|EGB83624.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
          Length = 626

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/665 (26%), Positives = 291/665 (43%), Gaps = 72/665 (10%)

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +   E  A
Sbjct: 1   FAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD---ETLA 57

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  G
Sbjct: 58  AQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGG 117

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D
Sbjct: 118 GVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPD 177

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++     + 
Sbjct: 178 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADV 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            I+ E Y+      E    + ++A   ++++  + FE+G+P+I ++D  N  +     G 
Sbjct: 238 AIS-ERYDELVAD-ERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRAN--PIAGR 293

Query: 579 VHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIR 626
           ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    A T+ 
Sbjct: 294 INMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA-----HTMDSPDFARTVE 348

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TAVR L  V D++  H++   +  N    AIGLG M     L    I Y SPEA++  + 
Sbjct: 349 TAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNL 408

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDEL 736
               I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E+    
Sbjct: 409 YFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARS 468

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-M 795
            +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 469 GITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGK 528

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G       F+ NE                                  ++  A+EI    
Sbjct: 529 TGRVYYPAPFMTNE-------------------------------NLALYQDAYEIGAEK 557

Query: 856 LIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E +
Sbjct: 558 IIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA-LEGT 616

Query: 915 TLKGV 919
            ++G 
Sbjct: 617 EIEGC 621


>gi|323495951|ref|ZP_08101017.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
 gi|323318986|gb|EGA71931.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
          Length = 693

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 180/695 (25%), Positives = 303/695 (43%), Gaps = 73/695 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + EG   + + E   D + + L  D  Y+  F F  +LG    +  Y L   +
Sbjct: 39  AEKLDYLLNEGYYEKEVLE-QYDREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
           G R  E  +   +  A+ LA  +      A++    + S  F  +TPT  NSG +   +L
Sbjct: 98  GKRYLERFEDRVVMTALTLARGDK---AFALDLMQEIISQRFQPATPTFINSGKKSRGEL 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I G   +S GV+P +
Sbjct: 155 ISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGIVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            ++   QN    LFSP +V  ++ +   E  ++ E Y    D   I+  + ISA  L++ 
Sbjct: 275 TLELAKQNKDMYLFSPHDVERVYGVPFSEISVS-EKYHEMVDDPRIRKSK-ISARGLFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +  + FE+G+P++ F+D  N  +     G ++ SNLC+EI   + +              
Sbjct: 333 LAEIQFESGYPYLMFEDTVNAAN--PIKGRINMSNLCSEILQVNDASHFNDDLSYAHLGR 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      T+  ++R L+ V +++   ++   ++ N    A
Sbjct: 391 DISCNLGSVNIAKALDGGHLD-----HTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S EAV+          +H ++AS +LA ER   +  F+ S
Sbjct: 446 IGLGQMNLHGFLAREQIHYDSEEAVDFTRTYFATTLYHCLTASNKLALERKQVFVGFEHS 505

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +         ++A + + L M   S   W +L+ +V   G+ N N  AI
Sbjct: 506 QYATGEFFTKYLQQDYSPRTDIVAALFERLDMRVPSIDDWQQLQSKVMESGLYNRNLQAI 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N                 
Sbjct: 566 PPTGSISYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSN----------------- 608

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                         D       A+EI P  +I+  +   + +DQ  SL L+  DE + + 
Sbjct: 609 --------------DNLDYFKDAYEIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW   +KT YY+R R    +E + ++G 
Sbjct: 655 INKAQIYAWKKKIKTLYYIRMRQKA-LEGTQVEGC 688


>gi|62181311|ref|YP_217728.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62128944|gb|AAX66647.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715797|gb|EFZ07368.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 714

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 308/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENVQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|149185042|ref|ZP_01863359.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
 gi|148831153|gb|EDL49587.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
          Length = 679

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/679 (31%), Positives = 313/679 (46%), Gaps = 96/679 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 87  DESRDDLLTEFGKETLEDRYLLPG-----ESYQDLFARVADAFA----DDQDHAQRLYDY 137

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 138 ISRLWFMPATPVLSNGGTQRGLPISCYLNSVSDSLDGIVNTWNENVWLASKGGGIGTYWG 197

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 198 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDVTHPEIEEFLEI 256

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP + S                 
Sbjct: 257 RKPSGDFNRKALNLHHGVLVTDAFMEAVRNGEEFDLLSPKDGS----------------- 299

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V + + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 300 ----------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNRMMPKHHRDLGLKVSTS 349

Query: 583 NLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC EITL +      ++ TAVC L S+N+      N  D   +   +R    VL N ID
Sbjct: 350 NLCAEITLPTGIDHLGNDRTAVCCLSSLNIEKWDEWNT-DKQFIEDIMRFLDNVLQNYID 408

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +AK S    R++GLG+MGF S L    I + SP A     +  + I   A  A
Sbjct: 409 RAPDEMARAKYSAMRERSVGLGVMGFHSFLQQKGIGFESPMAKVWNLKMFKHIQSKASEA 468

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LAQERGA    +    D G                                      
Sbjct: 469 SMVLAQERGACPDAE----DMGAME----------------------------------- 489

Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++   
Sbjct: 490 -RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKSKN 548

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL+
Sbjct: 549 STAIWNSILEKGGSVQHLDFLTPEEKATFKTSFEIDQRWLLEFAADRAPYIDQAQSLNLF 608

Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +     K  L  ++ QAW  G+K+ YYLRS+S          G  G + A    D  ++ 
Sbjct: 609 IPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEADNTAD--AAK 660

Query: 936 HSLGIPSSCTSDTECEVCQ 954
           + L   +  T   EC  CQ
Sbjct: 661 YELAAGAEQTDYEECLACQ 679


>gi|328943410|ref|ZP_08240875.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
 gi|327491379|gb|EGF23153.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 756

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/787 (24%), Positives = 328/787 (41%), Gaps = 80/787 (10%)

Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +S S  ++ +  ++ T    ++ +Y     +  +          +Y K Q     +    
Sbjct: 22  MSTSTTDSYIALNALTRFKTEDGHYNFSADKKAV---------QLYLKEQVEPRLKTFES 72

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
             +     +E     + + +     D+  L + L YE+ F F   +G    Y  Y L  +
Sbjct: 73  CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTS-LAYEQHFEFLSLMGAMKFYMAYALQSD 131

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
                + + F  RV M            A     +L+S+  F  +TPT  N+G  R  + 
Sbjct: 132 DRTTYL-ERFEDRVVMCALFLANGDVALARNLVLDLMSN-RFQPATPTFLNAGKKRRGEY 189

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I   +  +  L+K  GG+    T +R  GA I G   ++ GV+P +
Sbjct: 190 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 249

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  DT    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 250 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 309

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             K   +N    LFSP ++   +     +  I  E Y+   +         ISA   ++ 
Sbjct: 310 TFKLAKENKDMALFSPYDIEKEYKCSMADMSIT-EKYDELVNNPR-IKKDYISARKFFQT 367

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   S+               
Sbjct: 368 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 427

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRA 655
              CNLGSIN+ A   +      + + TI+ A+  LD V   +         K N  + A
Sbjct: 428 DICCNLGSINIAAAMDHAS----EFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 483

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG M     L   HI YAS EAV+  D     +++HA  AS ELAQ  GA++ F  S 
Sbjct: 484 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 543

Query: 716 WDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +A++  +      ++  W EL K ++  G+ NS+ MA+A
Sbjct: 544 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 603

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    +  +         V ++ +++                  
Sbjct: 604 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAYKISD------------------ 645

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                      D  K     A+E+    +I   +  QK +DQA SL L++  + + + L+
Sbjct: 646 -----------DTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLN 694

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             Y  A+     + YY+R R         L+  +   +A    +  S+ H       C  
Sbjct: 695 RAYIYAFKKKCDSIYYVRIRQDVLEGSEHLESDEILPDAAKSDEKKSAFH-------CDG 747

Query: 947 DTECEVC 953
            +EC+VC
Sbjct: 748 SSECQVC 754


>gi|156564206|ref|YP_001429716.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622903|gb|ABS83783.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
          Length = 767

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/788 (27%), Positives = 356/788 (45%), Gaps = 106/788 (13%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           +E A     ++ +  ++ +  +  +    +  L  ++ ++   +    P++  V A   L
Sbjct: 22  LERASKE-YNLDATKIIEKVKRLSHTE--DKALHNSIFYALNNIDMGAPDWTFVAANMKL 78

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +++ +       +    +   +    Y +      E G+ +  +  S  + ++  +   +
Sbjct: 79  QQMYKTA----SENRGYSRSLKYGSFY-KLIKTLTEMGIYSPAILASYSEEEINEIGRMI 133

Query: 286 KYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEF 342
              +D  F ++GL +L DRY      GS  E+PQ   M +A+   + E +  + A   E 
Sbjct: 134 DPSKDSLFNFIGLFLLNDRYAATDYQGSLYELPQERLMMIAVTTMINEPKATRLAHIKEL 193

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  LS+ +   +TPT  N+G  + QLSSCF+  V D L GI+ +  + A L+K  GG+  
Sbjct: 194 YWALSNLYATAATPTFANAGKSYGQLSSCFIDKVDDSLDGIYLSNMDAARLSKDGGGVAL 253

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ VR LG+ I G  GKS G  P++K+ N TA+ V+Q G+RKGA   Y+   H D+ +F
Sbjct: 254 YFSKVRALGSPIKGFEGKSSGTTPWIKMFNQTAITVDQLGQRKGAFAIYMCLDHKDIMKF 313

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSD------ 509
           L+L  N GD+  R  ++ T   +PDLFMK++ +          W  F P ++        
Sbjct: 314 LELGLNNGDEADRAREIFTGVAVPDLFMKKLDEVDENGRSIGQWHTFCPHQIKQHMQWKD 373

Query: 510 -------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  L D Y ++    YE    +A    +       A+ +  +++ +  ETG P++ 
Sbjct: 374 ENGNLLTLDDFYDEKDTKYYEEKYMEAVNNPLLPRDTHRAMDIMVRIMEIQLETGMPYMF 433

Query: 563 FKDPCNIRSPQQHVG-----VVHSSNLCTEITLNS--------------------SSEET 597
           ++D  N  +P +HV       ++ SNLCTEI  N                     S  E 
Sbjct: 434 YRDQVNRMNPNKHVHGIGRTAIYCSNLCTEIAQNQVSSMIIGEYIDENENIHMVRSPGEY 493

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            VCNL S+NL             LA  IR   R+LDN+IDIN  ++ +A  +N  +R IG
Sbjct: 494 VVCNLASVNLAKAVPAGV-----LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIG 548

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G  G+   L +L + + S  AV  AD   E  ++H I +SVELA+E+G Y  F+GS W 
Sbjct: 549 MGAYGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELAKEKGTYKYFEGSAWH 608

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G +      + A+              W  LK++V   G+RN   MA+AP AT A + G
Sbjct: 609 TGEYFDQRDYVSAK--------------WKALKEKVAKFGVRNGWMMALAPNATTAKVGG 654

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +   DP       +   +  F V    L                D   ++         
Sbjct: 655 STDGNDPITAVEGAEEKGNFKFKVTAPGL----------------DHNTYNV-------- 690

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMG 896
                    T   ID +W ++  +++Q+ IDQ+ S NLY+     G +L  I++ A  +G
Sbjct: 691 ------YRKTRHHIDQLWSVKQTAKKQRHIDQSISFNLYVASDIDGAELLNIHKTAHKLG 744

Query: 897 LKTTYYLR 904
           +KTTYY++
Sbjct: 745 IKTTYYVK 752


>gi|331701738|ref|YP_004398697.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129081|gb|AEB73634.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 721

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 309/714 (43%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K+  +    +   L   +         +A  +H+  + F +  L   L  ++
Sbjct: 32  KEALEAFLKENVQPNLMKFDSLSDRFDYLIKNNYYEADFIHKYQLSF-VEKLYQYLN-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  N + + + ++F  RVA          E+ A++  + +  
Sbjct: 90  DFHFKSFMAAYKFYAQYALKTNDNDLYL-ESFLDRVAANALFFADGDEQLAMDLADEIVH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +  SCFL    DD+  I   +     L++  GG+G + + +
Sbjct: 149 QRYQPATPSFLNAGRENRGEFVSCFLIQTTDDMNTIGRTINSALQLSRIGGGVGINLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 REAGAPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + +  +A   LFSP +V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRLKTLSLGVTVPDKFYQLIKADADMYLFSPYDVEREYGVPFSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   +KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANDKISK-KKIKARDLETEISKLQQESGYPYIINIDTANRSN--PIAGRIVMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +              +   CNLGS N+     NN    D    ++ + VR L  V
Sbjct: 385 ILQVQTPSTVDNQQHYIKMGKDISCNLGSTNI-----NNMIAGDDFGHSVESMVRALTFV 439

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   +K N    +IGLG MG  S L   H+ Y SPE++E        +++ +
Sbjct: 440 TDHSNIDVVPSIQKGNKESHSIGLGGMGLHSFLAKHHMYYGSPESIEFTSVYFMLLNYWS 499

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDELAMN-RTSRLPWD 747
           + AS ++A+ER   + +F+ S +  G +    +        AEV+     +   ++  W+
Sbjct: 500 LVASNKIAKERKETFVNFENSKYADGSYFDKYLDGSFAPKSAEVKALFKDDWIPTKEDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +               
Sbjct: 560 NLKESVMKDGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E+ I  + Y          + +D    + +A+++D   +I+  +  Q+ I
Sbjct: 606 ----------ESKIGKIYYPA------PYLSNDTMPYYTSAYDMDMRKVIDIYAAAQQHI 649

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  +L L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 650 DQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAYKKGVKSIYYIRT 703


>gi|170289761|ref|YP_001736577.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173841|gb|ACB06894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 876

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/912 (23%), Positives = 376/912 (41%), Gaps = 155/912 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET----- 200
           K++  DG ++ F+S R+   +E A   +     + +L +  K + D +  +  +      
Sbjct: 5   KVVKRDGRVVEFDSFRIRRAIEMAMREVGKFD-EAILDKVVKYVLDVIDSTFSDERPPHV 63

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLE-----KLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             I     L   + +  +V   +++      K+R+E +  + K         +       
Sbjct: 64  EEIQDIVELALMKYDLFEVAKAYIVYRKEREKIRKEKMAILGKDYVDDVDKRLSLNAVRL 123

Query: 256 FC-RYIEEG-------------------------VKARLLHESMMDFDL---VYLANDL- 285
              RY+++G                         +   L+ +   + ++    Y   +  
Sbjct: 124 LASRYLQKGPDGRFLEDPKGLFIRIASLVVIPDILYDPLIFDKEGEQEVHPTEYFNPEEW 183

Query: 286 ---------KYERDFA--FEYLG-----LQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
                      E   A  F +       ++ LYD   L+  G        FF  +  G  
Sbjct: 184 AGKVGLGGGDPENHLAPPFVWNAHHLERMKALYDE--LNSQGKMRVSWSQFFDMLRDGRF 241

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
               +     +E+Y L+    F+ ++PTLFN+GT   QLS+CF+  + D L  I  +  E
Sbjct: 242 DHHYKD---FLEYYRLMVDLKFIPNSPTLFNAGTMLGQLSACFVLPIEDSLESIMRSATE 298

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            AM+ K  GG+G +++ +R  G  +  T G++ G + F+++ +     V QGG+R+GA  
Sbjct: 299 AAMIFKSGGGVGINYSKLRPQGDIVRSTGGQASGPVSFMRIIDVITDVVKQGGRRRGANM 358

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             LE WH D+ +F++ +   G+      + N +  I + F K   +   + L +P     
Sbjct: 359 GILEIWHPDIMKFIEAKAKPGN----LENFNLSVMITEDFWKYYEEGKDYPLINP----- 409

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                    +V+  I     +RK+  M + TG P + F D  N 
Sbjct: 410 ----------------------RNGEVWGSIDPREAFRKIAEMAWRTGDPGVLFADNINR 447

Query: 570 RSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLAST 624
           R+  + H+G + S+N C E  L         CNLGS+NL A+         FD+D+ +  
Sbjct: 448 RNILREHLGEIKSTNPCGEEPLYPYES----CNLGSMNLYAYIRRENGLVTFDWDEYSRD 503

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           IR A+R LDN+ID+N   I + +K+    R +GLGLMG    L  L IPY S E      
Sbjct: 504 IRKALRFLDNIIDVNKFPIPEIEKTTKRTRKVGLGLMGLADTLFALRIPYNSEEGFNFMR 563

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            + E++++ A+  SVE A+ERG++  F  S + +G  P++                   L
Sbjct: 564 RAAEYLTYFAMLESVERAKERGSFPLFPESGYVRGEMPVEG----------FYHPEIWNL 613

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L++++   G+RN+    IAPT +I+ I  VS  I+P +  ++ K    G F  V++
Sbjct: 614 DWDYLREQIMRNGIRNAEVTTIAPTGSISMIAEVSSGIEPQFALVFEKRVTVGSFFYVDA 673

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSI------GNIERIPDDLKKIHATAFEIDPMWLIE 858
               +LK+  L+ E ++ D+  + GS+         E + + +K+I   A++I     I 
Sbjct: 674 EFERQLKENGLYSEKILRDIAENGGSLYGIEAPEGKEDVIERMKRIFLVAYDIPWWDHIR 733

Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS---------- 907
           + +   +WI  A S  + +    S   ++  Y  A  +GLK     R  S          
Sbjct: 734 AEAEISRWICAAVSKTINMPNWVSVSDIEKAYLFAHRLGLKGITVYRDGSKSAQVLITPT 793

Query: 908 ------ATSVEKSTLK---------------GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                 A+ +E  TLK                V+ K  A PV  P +  + +     C S
Sbjct: 794 QRRGEYASFIENETLKMMESLGIELPQLRKAKVEEKTQAQPVFKPPAQPNHVETCPECGS 853

Query: 947 -----DTECEVC 953
                  +C  C
Sbjct: 854 TRLIHKEDCVTC 865



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++  +V+KR+G V  FD  +I RAI  A   V           + I+  + +  +  +  
Sbjct: 1   MRVTKVVKRDGRVVEFDSFRIRRAIEMAMREVGKFD-------EAILDKVVKYVLDVIDS 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                   H+E+IQD VE +LM+    ++ + Y++YR+ER  +R  +
Sbjct: 54  TFSDERPPHVEEIQDIVELALMKYDLFEVAKAYIVYRKEREKIRKEK 100


>gi|329847262|ref|ZP_08262290.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
 gi|328842325|gb|EGF91894.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
          Length = 589

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/683 (30%), Positives = 306/683 (44%), Gaps = 111/683 (16%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY +       E  Q  F RVA   A    +  + A   Y+ 
Sbjct: 4   DPSRDALLTDFGKTTLDDRYLMPG-----ESYQDMFARVATTYA----DDSEHAQRIYDY 54

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  VPD L GI G   EN  LA   GG+G  W 
Sbjct: 55  ISRLWFMPATPVLSNGGASRGLPISCFLNAVPDSLEGIVGTWNENVALASNGGGIGTYWG 114

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL++
Sbjct: 115 RVRSIGEKVK-GAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVFHPEIEEFLEI 173

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V     + L SP                     
Sbjct: 174 RKPSGDFNRKSLNLHHGIGITDEFMEAVRDGTPFGLRSPKNDE----------------- 216

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V R I A  LW+K+L +  +TG P++ F D  N   PQ        V  S
Sbjct: 217 ----------VVRYIDARNLWQKILEIRLQTGEPYLIFNDTINRSMPQHQRELGLKVTQS 266

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EI L++  +      TAVC L S+N     A    ++      I   +R LDNV++
Sbjct: 267 NLCSEIMLHTGPDHRGQDRTAVCCLSSVN-----AETFMEWRDAPGFIEDVMRFLDNVLE 321

Query: 638 INCHTIE----KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
                       A  S    R++GLGLMGF S L    + + S  A        + +   
Sbjct: 322 DFIQCAPGSMDSAVYSALCERSVGLGLMGFHSFLQAQGVAFESAMAKSWNMRLFKHLRRE 381

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS++L QERG     +     +GV                                 
Sbjct: 382 ADKASIKLGQERGPCRDAEE----RGVME------------------------------- 406

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L+ 
Sbjct: 407 -----RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLET 461

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +    +  ++  H+GS+ +++ + +D K +  TAFEID  W++E A+ R   I Q+QS
Sbjct: 462 KGINTAEVWDNIVQHEGSVQHLDELSEDEKFVFKTAFEIDQRWVVELAADRTPEICQSQS 521

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN++L     K  L  ++  AW  GLK+ YYLRS+S   V++++  G + K     ++ P
Sbjct: 522 LNIFLPGDVDKWDLHMLHWTAWEQGLKSMYYLRSKS---VQRASHAGSETKEIVEKMSTP 578

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                        T   EC  CQ
Sbjct: 579 K------------TDYEECLACQ 589


>gi|319406096|emb|CBI79726.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           AR 15-3]
          Length = 716

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 185/720 (25%), Positives = 300/720 (41%), Gaps = 67/720 (9%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           F +++L        +        H ++    E     +EE    R L   + DF  +   
Sbjct: 36  FDMDRLAARQYFLQHVNQNTVFFHNLK----EKIDYLVEENYYEREL-FELYDFSFIKKL 90

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRA 339
               Y   F F  +LG    Y  Y L   +G R  E  +     VA+ LA         A
Sbjct: 91  FKRAYAFKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALYLAQGIKG---LA 147

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + + +  F  +TPT  N+G  +  +L SCFL  V D++  I  ++     L+K  G
Sbjct: 148 EGLVDEIITGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGG 207

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    T +R  GA I     ++ GV+P +K+  D     NQ G R+GA   YL   H+D
Sbjct: 208 GVALCLTNLREAGAPIKKIENQASGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLD 267

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FLD ++   D++ R   ++    IPD+  +    N    LFS     D+  + GK F
Sbjct: 268 IMKFLDTKRENADEKIRIKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPF 324

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I+   + R          +KISA   ++ +  + FE+G+P+I F+D  N  +     G
Sbjct: 325 SDISLTEHYRSFVDNSKIRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRAN--PIAG 382

Query: 578 VVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI   S + E        AV N  S NL +       + D    T+  AVR
Sbjct: 383 RISMSNLCTEILQVSEASELDTDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVR 442

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ N   +    K N    AIGLG M     L    I Y + EA++  +     
Sbjct: 443 ALTAVSDMSNIACVPSIAKGNAESHAIGLGQMNLHGFLAREKIYYGTLEAIDFTNIYFYT 502

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--------MNR 740
           +++HA+ AS  +A+ER   +  F+ S +  G F    I    + + EL         +  
Sbjct: 503 VTYHALRASNLIARERKKMFVGFEKSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVI 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++        
Sbjct: 563 PNQRDWQELKQLVAQYGLYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRK------- 615

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y    + N         + +  A+EI P  +I++ 
Sbjct: 616 -----------------EGKIGRVYYPAPYMDNTNL------EFYQDAYEIGPEKIIDTY 652

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + +DQ  SL L+  D  + + ++     AW  G+K+ YY+R R    +  + + G 
Sbjct: 653 AAATQHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVRLRQMA-LSGTEVDGC 711


>gi|261247948|emb|CBG25781.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
          Length = 714

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 308/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + E  
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREEY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LEGTEIEGC 709


>gi|225164891|ref|ZP_03727110.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800505|gb|EEG18882.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 608

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 246/572 (43%), Positives = 340/572 (59%), Gaps = 42/572 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RN  V  F P KI  A+ KAF++++              + +T+    R+  H   
Sbjct: 51  RVIRRNHQVVPFLPQKIEVAVRKAFLSLDRDSTP--------AEAVTQAVSERI--HASR 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP------ 143
               H+E+IQD V+  LM++GH+K+   Y++YR  R + RA      + +  +       
Sbjct: 101 QAFAHVEEIQDIVQEELMKAGHYKVAEAYIIYRALRHNGRATSIQPDAASAGSEIPDLKP 160

Query: 144 ---------KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGL 193
                     + +   DGT + ++   L + +E A  GL   ++   + +   +++YD +
Sbjct: 161 QIRSGDADTMIVVTQPDGTTLLWDRTDLRLRIEFARIGLDLCLTPAEIETALTRSLYDQI 220

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +  DL+  +I +S+TLIE++ ++AK   R  L  +  EVL   +    +    +++  + 
Sbjct: 221 TRRDLDQTIILNSKTLIERDADFAKFAGRIQLTYIYEEVL---HWDIVRDGIGKLKTAHQ 277

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HING 311
             F +++  G     L+  ++D+DL  LA  L    D   ++LG+Q LYDRY +      
Sbjct: 278 AAFKKHLAHGAAIHRLNPRLLDYDLDKLAAALDPSADLELDFLGIQTLYDRYLVTDKTTN 337

Query: 312 ----SRIEMPQAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                R+E PQ F+MRVAMGL L + +     +E+R    Y L  S  F  STPTLFNSG
Sbjct: 338 PAAPRRLETPQLFWMRVAMGLFLDDGDPATGQREQRITALYELYKSRRFCSSTPTLFNSG 397

Query: 363 TRHPQLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T H QLSSC+L T+ D L  I    + ENA L+K++GGLG  WT VRG GAHI GTNG+S
Sbjct: 398 TLHSQLSSCYLYTIDDSLESIMTRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGES 457

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGVIPFLK+ ND   AVNQGGKRKG+ CAYLETWH D+ EFL+LRKNTGDDRRRTHDMNT
Sbjct: 458 QGVIPFLKLHNDQLNAVNQGGKRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNT 517

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKR+     WTLF   +V DLH+LYG++FE AY  YE  A  G+I   R I+
Sbjct: 518 ANWIPDLFMKRMEAREHWTLFHSSDVPDLHELYGRKFEDAYLRYETLAAEGKIHGHR-IA 576

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           A+ LW+KML+MLFETGH W+TFKD CNIRSPQ
Sbjct: 577 ALDLWKKMLSMLFETGHTWLTFKDACNIRSPQ 608


>gi|227542804|ref|ZP_03972853.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181430|gb|EEI62402.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 718

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 180/693 (25%), Positives = 294/693 (42%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     ++     + + E   +F+ +    D  Y   F F  +LG    Y  Y L   +G
Sbjct: 65  EKLDYLVDNDYYEKEVLEK-YNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDG 123

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
            R  E  +     VA+ LA  +   E  A    + +    F  +TPT  NSG  +  +  
Sbjct: 124 QRYLERFEDRVCMVALTLAAGD---EDLARNLVDEIILGRFQPATPTFLNSGKKQRGEPV 180

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 181 SCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMK 240

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 241 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDIT 300

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +V  ++     +  I+   YE   D        KI+A   ++ +
Sbjct: 301 FELAKKNDDMYLFSPYDVERVYGKAFADVSISEHYYEMVEDPRIH--KTKINARHFFQTL 358

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G V  SNLC+EI   ++  E             
Sbjct: 359 AEIQFESGYPYIMYEDTVNRAN--PIEGRVTQSNLCSEILQVATPSEYNADLSYATVGED 416

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D    A+TI TA+R L  V +     ++   KK N    AI
Sbjct: 417 ISCNLGSLNIAM-----AMDSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAI 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L   HI Y S EA++  +     + +  + AS ++A+ER   ++ F  S 
Sbjct: 472 GLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSD 531

Query: 716 WDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F               +  + D   ++  +   W ELK+ V   G+ N    A+ 
Sbjct: 532 YASGAFFDRYDPAEFAPKTDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVP 591

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 592 PTGSISYINNSTSSIHPIASRIEIRK------------------------EGKIGRVYYP 627

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D  +    A+EI    +I++ +   K++DQ  SL L+  D  S + ++
Sbjct: 628 A------PHMDNDNLEYFQDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDIN 681

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++G 
Sbjct: 682 RAQIYAWTHGIKTLYYIRLRQVA-LEGTEVEGC 713


>gi|85710101|ref|ZP_01041166.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
 gi|85688811|gb|EAQ28815.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
          Length = 669

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 219/741 (29%), Positives = 323/741 (43%), Gaps = 105/741 (14%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV-------KARLLHESMMDFDLVYLAN 283
           E L T  K  +  T  +      E       E +                   +      
Sbjct: 17  ETLGTEMKDEKAVTMDKSDAGSEELIAAKSAEALGNAVAEAAKAAAVPDSKKVNDRRFDV 76

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            +   RD      G + L DRY L       E  Q  F RVA   A    + ++ A   Y
Sbjct: 77  QIDESRDANLTEFGKETLTDRYLLPG-----EKYQDLFARVADAYA----DDQEHAQRLY 127

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S+  FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  
Sbjct: 128 DYISNLWFMPATPVLSNGGTSRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTY 187

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 188 WGNVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFL 246

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    + D FM+ V   A + L SP                   
Sbjct: 247 EIRKPSGDFNRKALNLHHGVLLTDEFMEAVRDGADFDLKSPKTGE--------------- 291

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   ++A +L++K++     TG P+I F D  N   P+ H      V 
Sbjct: 292 ------------VRGTVNARSLFQKLVECRLATGEPYIVFNDTVNRMMPKHHRDLGLKVS 339

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +      ++ TAVC L S+NL   +     D   +   +R    VL + 
Sbjct: 340 TSNLCSEITLPTGIDHLGNDRTAVCCLSSLNLEK-WDEWSTDKQFIEDVMRFLDNVLQDY 398

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID     + +A+ S    R++GLG+MGF S L    + + S  A  +  +  + I   A 
Sbjct: 399 IDRAPDEMARARYSAERERSVGLGVMGFHSFLQQKGLGFESAMAKALNLKMFKHIQAKAS 458

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ LAQERG                           D   M                 
Sbjct: 459 EASMLLAQERGPCP------------------------DAAEMGAME------------- 481

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++ 
Sbjct: 482 ---RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKS 538

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                + + +    GS+ +++ + D+ K    T+FEID  WL+E A+ R  +IDQAQSLN
Sbjct: 539 KNSTNVWNSILERGGSVQHLDFLTDEEKASFKTSFEIDQRWLLEFAADRAPYIDQAQSLN 598

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K  L  ++ QAW  G+K+ YYLRS+S          G  G + A    D  +
Sbjct: 599 LFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEA----DNTA 648

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                 + +  T   EC  CQ
Sbjct: 649 DAAKFELAAEQTDYEECLSCQ 669


>gi|255324327|ref|ZP_05365448.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255298657|gb|EET77953.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 720

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/758 (23%), Positives = 313/758 (41%), Gaps = 79/758 (10%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----------REVLTTVYKKPQKATHH 246
           + T L  +    ++ E          +L  L            RE     + +       
Sbjct: 1   MSTQLGKTVAEPVKPEEQLDYHALNAML-NLYDANGKIQFEKDREAANQFFLQHVNQNTV 59

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
               L  E     I        + E   DF  +       Y   F F  +LG    Y  Y
Sbjct: 60  YFHDL-EEKIDYLINNKYYDPQVIE-QYDFSFIKELFKRAYSYKFRFKSFLGAYKYYTSY 117

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-R 364
            L     R  + + F  RV+M            A    + + +  F  +TPT  N+G  +
Sbjct: 118 TLKTFDGRRYL-ERFEDRVSMTALFLADGDAGLAEHLVDEIMTGRFQPATPTFLNAGKAQ 176

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GV
Sbjct: 177 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGV 236

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 237 IPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIV 296

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD+  +   +N    LFSP +V  ++     +  +  E+YE   +   I+  +KI+A  
Sbjct: 297 VPDITFELAKRNDDMYLFSPYDVERVYGKAFGDISVT-EHYEEMVEDPRIRK-KKINARH 354

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------- 596
            ++ +  + FE+G+P+I F+D  N  +P +    ++ SNLC+EI   +S+ E        
Sbjct: 355 FFQTVAELQFESGYPYIMFEDTVNRANPVKTS-WINMSNLCSEILQVNSASEFNADLTYE 413

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
                  CNLGS+N+         D    A+T+ TA+R L  V D     ++   ++ N 
Sbjct: 414 ELGSDISCNLGSLNIAM-----TMDSPDFANTVETAIRGLTAVADKTSIDSVPSVRRGND 468

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER   ++ 
Sbjct: 469 ESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARERGEYFTE 528

Query: 711 FKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
              S +  G F               + E+ D  +++  S   W++LK+ V   G+ N N
Sbjct: 529 LPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQDVAKYGLYNRN 588

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             A+ PT +I+ I   + SI P    + ++                         E  I 
Sbjct: 589 LQAVPPTGSISYINNSTSSIHPIASKIEIRK------------------------EGKIG 624

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
            + Y          + +D  +    ++EI    ++++ +   K++DQ  SL L+  D  +
Sbjct: 625 RVYYPA------PHMDNDNLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTLFFKDTAT 678

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 679 TREVNRAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 715


>gi|308233464|ref|ZP_07664201.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 735

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/787 (24%), Positives = 328/787 (41%), Gaps = 80/787 (10%)

Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +S S  ++ +  ++ T    ++ +Y     +  +          +Y K Q     +    
Sbjct: 1   MSTSTTDSYIALNALTRFKTEDGHYNFSADKKAV---------QLYLKEQVEPRLKTFES 51

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
             +     +E     + + +     D+  L + L YE+ F F   +G    Y  Y L  +
Sbjct: 52  CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTS-LAYEQHFEFLSLMGAMKFYMAYALQSD 110

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
                + + F  RV M            A     +L+S+  F  +TPT  N+G  R  + 
Sbjct: 111 DRTTYL-ERFEDRVVMCALFLANGDVALARNLVLDLMSN-RFQPATPTFLNAGKKRRGEY 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I   +  +  L+K  GG+    T +R  GA I G   ++ GV+P +
Sbjct: 169 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  DT    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 229 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             K   +N    LFSP ++   +     +  I  E Y+   +         ISA   ++ 
Sbjct: 289 TFKLAKENKDMALFSPYDIEKEYKCSMADMSIT-EKYDELVNNPR-IKKDYISARKFFQT 346

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   S+               
Sbjct: 347 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 406

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRA 655
              CNLGSIN+ A   +      + + TI+ A+  LD V   +         K N  + A
Sbjct: 407 DICCNLGSINIAAAMDHAS----EFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 462

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG M     L   HI YAS EAV+  D     +++HA  AS ELAQ  GA++ F  S 
Sbjct: 463 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 522

Query: 716 WDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +A++  +      ++  W EL K ++  G+ NS+ MA+A
Sbjct: 523 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 582

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    +  +         V ++ +++                  
Sbjct: 583 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAYKISD------------------ 624

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                      D  K     A+E+    +I   +  QK +DQA SL L++  + + + L+
Sbjct: 625 -----------DTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLN 673

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             Y  A+     + YY+R R         L+  +   +A    +  S+ H       C  
Sbjct: 674 RAYIYAFKKKCDSIYYVRIRQDVLEGSEHLESDEILPDAAKSDEKKSAFH-------CDG 726

Query: 947 DTECEVC 953
            +EC+VC
Sbjct: 727 SSECQVC 733


>gi|226226348|ref|YP_002760454.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
 gi|226089539|dbj|BAH37984.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
          Length = 859

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/650 (26%), Positives = 276/650 (42%), Gaps = 71/650 (10%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344
                  +L  RY +   +G  +E P+  F RVA  +A  +          +  A EFY 
Sbjct: 14  LSANARTVLEKRYLVKDKSGKPVEKPEDMFWRVATTVAEADRRYGASDGAVQAIAEEFYF 73

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGL 400
           L++   F  ++PTL N+G    QLS+CF+  V D L     GI+  L+  A++ +  GG 
Sbjct: 74  LMTQRRFEPNSPTLMNAGRPLGQLSACFVLPVDDALSNGQSGIYDTLRSMALIHQSGGGT 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ +  T G + G + F+++ + +  AV QGG R+GA    L   H DV 
Sbjct: 134 GFSFSRLRSRGSMVRSTTGVASGPVSFMQLYDASTDAVKQGGTRRGANMGILRVDHPDVM 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+  +    +D  +  + N +  I   FM  V  +A + L  P                
Sbjct: 194 EFIACK----EDLTKITNFNISVGITTKFMDAVKADANYDLVDP---------------- 233

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV  ++ A  +W KM+   + TG P + F D  N  +P  H+G   
Sbjct: 234 -----------VSKKVTGELRAREVWDKMILGAWRTGEPGVFFIDEANRYNPVPHLGDYE 282

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ++N C E  L +      VCNLGS+N+  + +N   D++ +   I  +   LDN+ID+N 
Sbjct: 283 ATNPCGEQPLLAYD----VCNLGSVNVGHYVSNGVVDWEAMRRDIALSTHFLDNIIDVNK 338

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +    +   R IGLG+MGF   L  L IPY S E VE+  + MEF+       S  
Sbjct: 339 YPLPEIDALSKRIRRIGLGVMGFADMLVRLGIPYDSAEGVEMGRKVMEFLDVEGKKESER 398

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERGA+  +  S+W     P ++    A  +    M                   +RN
Sbjct: 399 LARERGAFPEWAQSIWG----PDETCARDANGQRIRPMQL-----------------LRN 437

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            N   +APT TI+ I G S  ++P +   ++++        VN   V   K    + + +
Sbjct: 438 CNVTTVAPTGTISIIAGCSSGLEPLFAVAFMRNQAGVMMPDVNEDFVAIAKAEGWYSDEL 497

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  +    GS+ + E +P   + +  TA  I P + I   +  Q   D A S        
Sbjct: 498 MERI-AKTGSVQHAE-VPAKWQSVFNTANNISPEYHIRMQAAYQLHCDSAISKTTNFGFA 555

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            +   +  IY  A+ M  K     R  S  +   ST    D   N     
Sbjct: 556 ATVDDVRAIYEMAYEMKCKGVTVYRDGSRDNQVLSTGATQDAAANRESAK 605


>gi|148554423|ref|YP_001262005.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingomonas
           wittichii RW1]
 gi|148499613|gb|ABQ67867.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           wittichii RW1]
          Length = 653

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/685 (31%), Positives = 318/685 (46%), Gaps = 108/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++ + RD      G + L DRY L       E  Q  F+RVA   A    + +  A   Y
Sbjct: 63  EVDHSRDALLTDFGKETLTDRYLLPG-----ESYQDLFVRVASAYA----DDQPHAQRLY 113

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  
Sbjct: 114 DYISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTY 173

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 174 WGSVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAAVYLDVSHPEIEEFL 232

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    + D FM+ V   A W L SP + S               
Sbjct: 233 EIRKPSGDFNRKALNLHHGVLLTDAFMEAVRDGAEWDLVSPKDGS--------------- 277

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
                           + A AL++K++     TG P+I F D  N   P+ H  V   V 
Sbjct: 278 ------------KRSSVDARALFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDVGLKVS 325

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +  ++     TAVC L S+NL         +++     +   +R LDNV
Sbjct: 326 TSNLCSEITLPTGRDQHGMDRTAVCCLSSLNL-----ETWDEWNGDKRFVEDVMRFLDNV 380

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     + +AK S    R++GLG+MGF S L    +P+    A        + I+
Sbjct: 381 LQDYIDRAPDEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHIA 440

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS+ LA ERG          D GV                               
Sbjct: 441 AAAAEASMLLASERGPCPD----AADLGVME----------------------------- 467

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F++ N +L   L
Sbjct: 468 -------RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLQKLL 520

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            ++    +A+ + +    GS+ +++ +  D K ++ T+FEID  WLIE A+ R  +IDQA
Sbjct: 521 AEKSKDSDAVWNSILEKGGSVQHLDFLTQDEKDVYKTSFEIDQRWLIELAADRTPYIDQA 580

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A    
Sbjct: 581 QSLNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA------GFAGGVEA---- 630

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
             +++     I        EC  CQ
Sbjct: 631 --DNTPDLKQIELETKDYDECLACQ 653


>gi|38234437|ref|NP_940204.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200700|emb|CAE50396.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           diphtheriae]
          Length = 719

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 183/741 (24%), Positives = 302/741 (40%), Gaps = 82/741 (11%)

Query: 215 NYAKVTARFLLEKLR--------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           +Y  + A   L            RE     + +           L  E     +E     
Sbjct: 20  DYHALNALLNLYDANGRIQFDKDREAANQFFLQHVNQNTVFFHDL-EEKIEYLVENNYYE 78

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMR 323
             + +    F  +       Y   F F  +LG    Y  Y L     R  +E  +     
Sbjct: 79  PEVLDKYS-FAGIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCM 137

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+ LA    E    A    + + +  F  +TPT  NSG  +  +  SCFL  + D++  
Sbjct: 138 VALTLADGSIE---LARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMES 194

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G
Sbjct: 195 IGRSINSALQLSKRGGGVALLLSNLRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLG 254

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LF
Sbjct: 255 ARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKRNEDMYLF 314

Query: 503 SPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           SP +V     +YGK F +I+                 KI+A + ++ +  + FE+G+P+I
Sbjct: 315 SPYDV---ERVYGKPFADISVTELYADMVEDPRIRKTKINARSFFQTIAEIQFESGYPYI 371

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLA 609
            F+D  N  +     G ++ SNLC+EI   +S              E   CNLGS+N+  
Sbjct: 372 MFEDTVNRAN--PIEGRINMSNLCSEILQVNSPSVLNADLTYEHVGEDISCNLGSMNIAM 429

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D    A T+ TA+R L  V +     ++   KK N    AIGLG M     L 
Sbjct: 430 -----AMDSTDFAKTVETAIRGLTAVSEQTSIDSVPSIKKGNDAAHAIGLGQMNLHGYLG 484

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----P 722
             HI Y S E ++  +     + +  + AS ++A ER   +  F+ S +  G +     P
Sbjct: 485 REHIFYGSEEGLDFTNAYFAAVLYQCLRASHKIAAERGQRFEGFETSDYADGSYFDRFDP 544

Query: 723 IDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            D     A+V++      +   +   W+ELK+ V   G+ N    A+ PT +I+ I   +
Sbjct: 545 ADFAPKTAKVQELFENSTIVVPTAEDWEELKQLVMKDGLFNRYLQAVPPTGSISYINNST 604

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P    + ++                         E  I  + Y          + +
Sbjct: 605 SSIHPIASRIEIRK------------------------EGKIGRVYYPA------PHMDN 634

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           D  + +  A+EI    +I++ +   K++DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 635 DNLEYYQDAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIK 694

Query: 899 TTYYLRSRSATSVEKSTLKGV 919
           + YY+R R    +E + ++G 
Sbjct: 695 SLYYIRLRQVA-LEGTEVEGC 714


>gi|152971533|ref|YP_001336642.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956382|gb|ABR78412.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 693

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/692 (26%), Positives = 299/692 (43%), Gaps = 79/692 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERD--FAF-EYLGLQILYDRYFLHINGSRIE 315
            + EG     +      +D  ++     + R   F F  +LG    Y  Y L     +  
Sbjct: 45  LVSEGYYDPQVLAG---YDRGFVLALFAHARRAPFRFQTFLGAWKFYTSYALKTFDGKHY 101

Query: 316 MPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
           + + F  R   VA+ LA  +   E++A +    + S  F  +TPT  N+G  +  +L SC
Sbjct: 102 L-EDFAERSVMVALTLARGD---EQQARQLTEEILSGRFQPATPTFLNAGKQQRGELISC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+ 
Sbjct: 158 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKML 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +
Sbjct: 218 EDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQ 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKML 550
              ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A  L++++ 
Sbjct: 278 LAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLA 334

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598
            + FE+G+P+I F+D  N  S     G V  SNLC+EI   S+              E  
Sbjct: 335 EIQFESGYPYIMFEDTVNRAS--PVAGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDI 392

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D      TI TAVR L  V D++   ++      N    AIG
Sbjct: 393 SCNLGSLNIA-----HTMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIG 447

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPE ++  +     +++HA+  S++LA+ER   ++ F+ S +
Sbjct: 448 LGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRY 507

Query: 717 DQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +    + + E          ++   R  W +L+  V   G+ N    A+ P
Sbjct: 508 ASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPP 567

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 568 TGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN-------------------- 607

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
                     +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++ 
Sbjct: 608 ----------NDNLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINK 657

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    +E + ++G 
Sbjct: 658 AQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 688


>gi|323359289|ref|YP_004225685.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
 gi|323275660|dbj|BAJ75805.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
          Length = 718

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/681 (25%), Positives = 285/681 (41%), Gaps = 66/681 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +E+      + E     + +   ND  Y   F F  +LG    Y  Y L   +
Sbjct: 66  KERLDYLVEKEYYEPTVLEKYS-MEFIQELNDRAYGAKFRFETFLGAFKYYTSYTLKTFD 124

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
           G R    + F  RV M         ++ AV+  + + S  F  +TPT  N+G  +  +L 
Sbjct: 125 GKRY--LERFEDRVVMTALALADGDQRLAVQLVDEIISGRFQPATPTFLNAGKAQRGELV 182

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S G+IP +K
Sbjct: 183 SCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREAGAPIKQIENQSSGIIPVMK 242

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 243 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 302

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +         LFSP +V  ++     +  +  E Y    D   I    KI+A   ++ +
Sbjct: 303 FELAKNGEDMYLFSPYDVEKVYGKPFGDISVT-EKYREMVDDPRI-KKTKINAREFFQTL 360

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +     G ++ SNLC+EI                +  + 
Sbjct: 361 AEIQFESGYPYIMFEDTVNKAN--PIAGRINMSNLCSEILQVNTPTTYNEDLSYDTIGKD 418

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D   L  T+ TA+R L  V +  +  ++   +  N    AI
Sbjct: 419 ISCNLGSMNIAL-----AMDGGDLGLTVETAIRALTAVSVQSHIASVRSIEDGNDRSHAI 473

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L   H+ Y S E ++  +     + FHA+ AS  LA ERG  +  F+ S 
Sbjct: 474 GLGQMNLHGYLAREHVYYGSEEGIDFTNIYFYTVLFHALRASNRLAIERGTAFDGFENST 533

Query: 716 WDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G F       + E +          +   ++  W ELK  V+  G+ N N  A+ PT
Sbjct: 534 YASGEFFDKYTDQVWEPQTAKAKELFAGVQIPTQDDWRELKASVQAHGIYNQNLQAVPPT 593

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ I   + SI P    + ++                         E  +  + Y   
Sbjct: 594 GSISYINNSTSSIHPIASKIEIRK------------------------EGKLGRVYYPA- 628

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                  + ++  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++  
Sbjct: 629 -----PFMTNENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKA 683

Query: 889 YRQAWLMGLKTTYYLRSRSAT 909
              AW  G+KT YY+R R   
Sbjct: 684 QIYAWRKGIKTIYYIRLRQLA 704


>gi|251788643|ref|YP_003003364.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247537264|gb|ACT05885.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 715

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 184/754 (24%), Positives = 307/754 (40%), Gaps = 82/754 (10%)

Query: 204 FSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            ++  L+   P    +Y  + A   +      +      +  +    +        F   
Sbjct: 1   MATAELLTAAPSSQLDYHALNAMLNIYDADGRIQFECDHQAIQCYFRDHVQPRTRRFPSL 60

Query: 260 IE-------EGVKARLLHE-SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
            E       EG     + E    DF +      +++   F   +LG    Y  Y L    
Sbjct: 61  EEKLRWLQQEGYYEPEVLERYQSDFIIDVFQRAVEHRSPFQ-SFLGAFKFYTSYALKSFD 119

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
               +E        VA+ LA  + +    A +  + + S  F  +TPT  N G  +  +L
Sbjct: 120 GSQYLENYGERVCMVALTLARGDAQ---LAQQLVDEMMSGRFQPATPTFLNCGKRQRGEL 176

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 177 VSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIM 236

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD R+   D++ R   ++    IPD+
Sbjct: 237 KMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDI 296

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            +     N    LFSP +V  ++ +   E  ++ E Y+   +  EI+    I+A   ++ 
Sbjct: 297 TLHLARNNQDMHLFSPYDVERIYGMPLSEISVS-EKYDELVNHPEIRKCA-INARQFFQT 354

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S + E            
Sbjct: 355 LAELQFESGYPYLMFEDTVNGNN--PVAGRITMSNLCSEILQVSRASEYQEDLSYRLVGK 412

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   LA ++  AVR L  V D++  + +      N    A
Sbjct: 413 DISCNLGSLNIA-----KVMDGGNLAHSVAIAVRALTAVSDMSHINAVPSIAAGNAESHA 467

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    I Y S EA++  +     +++HA+  S  LAQE    ++ F  S
Sbjct: 468 IGLGQMNLHGYLAREGILYGSEEALDFTNLYFYTVTYHALLTSSLLAQERNQTFAGFADS 527

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  GVF    +          + E+     +    R  W  LK+RV   G+ N N  A+
Sbjct: 528 QYASGVFFDRYLSQEWQPATERVRELFMVAGIALPLREDWLALKRRVMRYGLYNQNLQAV 587

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  +  + Y
Sbjct: 588 PPTGSISYINHATASIHPIVSRIEIRK------------------------EGRLGRVYY 623

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                     + +D ++ +  A+EI P  +I++ +   + +DQ  SL L + D  + + +
Sbjct: 624 PA------PYMTNDNQRFYQDAYEIGPEKIIDTYAIATRHVDQGLSLTLFFPDTATTRDI 677

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+KT YY+R R       + ++G 
Sbjct: 678 NKAQIYAWKKGIKTLYYIRVRQKALA-GTEIEGC 710


>gi|326386065|ref|ZP_08207689.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209290|gb|EGD60083.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 685

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/679 (31%), Positives = 313/679 (46%), Gaps = 98/679 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    +    A   Y+ 
Sbjct: 95  DPSRDALLTAFGKETLDDRYLLPG-----ETYQDLFARVADAYA----DDAGHAQRLYDY 145

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 146 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVEDSLEGIVATWNENVWLAARGGGIGTYWG 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 206 KVRGIGESV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 264

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP + S                 
Sbjct: 265 RKTSGDFNRKALNLHHGVLLTDEFMQAVRDGTEFDLKSPKDGS----------------- 307

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V  +++A AL++K++ +   TG P+I F D  N   P+ H     +V +S
Sbjct: 308 ----------VRGRLNARALFQKLVEVRLATGEPYIVFSDTVNRTMPKHHRDLGLMVSTS 357

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EITL +  +      TAVC L S+NL   +     D   +   +R    VL + I+
Sbjct: 358 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLET-WEEWHEDKLFIEDVLRFLDNVLQDFIE 416

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +AK S    R++G+G+MGF S L    I + S  A     +    I+  A  A
Sbjct: 417 RAPDEMARAKYSAARERSVGMGVMGFHSFLQKKSIAFESAMAKAWNLKMFRHIAARADEA 476

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LAQERG          D GV                                     
Sbjct: 477 SLLLAQERGPCPD----AADMGVMQ----------------------------------- 497

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   LK++   
Sbjct: 498 -RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLKEKSKD 556

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              + + +    GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQSLNLY
Sbjct: 557 STNVWNSILERGGSVQHLDFLTPEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNLY 616

Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +     K  L  ++ QAW  G+K+ YYLRS+S          G  G + A    D   + 
Sbjct: 617 IPADVDKWDLLMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEA----DNTPAA 666

Query: 936 HSLGIPSSCTSDTECEVCQ 954
             + + +  T   EC  CQ
Sbjct: 667 PVIELEARQTDYEECLACQ 685


>gi|260752514|ref|YP_003225407.1| ribonucleotide-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258551877|gb|ACV74823.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 613

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/683 (31%), Positives = 311/683 (45%), Gaps = 108/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIIDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP + S                 
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDGS----------------- 237

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 238 ----------KRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL+         +      I   +R LDNV  
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQ-----WHDNKRFIEDVMRFLDNVLQ 342

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  
Sbjct: 343 SYIDNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTK 402

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS+ LA+ERGA         D GV                                 
Sbjct: 403 ANEASMMLAKERGACPD----AADMGVME------------------------------- 427

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ 
Sbjct: 428 -----RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQD 482

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 483 KSKDSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQS 542

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A      
Sbjct: 543 LNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------GFAGGVEA------ 590

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
           +++     I     +  EC  CQ
Sbjct: 591 DNTPQMRQIEVEMRNYDECLACQ 613


>gi|262043917|ref|ZP_06017005.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038771|gb|EEW39954.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 701

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/692 (26%), Positives = 299/692 (43%), Gaps = 79/692 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERD--FAF-EYLGLQILYDRYFLHINGSRIE 315
            + EG     +      +D  ++     + R   F F  +LG    Y  Y L     +  
Sbjct: 53  LVSEGYYDPQVLAG---YDRGFVLALFAHARRAPFRFQTFLGAWKFYTSYALKTFDGKHY 109

Query: 316 MPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
           + + F  R   VA+ LA  +   E++A +    + S  F  +TPT  N+G  +  +L SC
Sbjct: 110 L-EDFAERSVMVALTLARGD---EQQARQLTEEILSGRFQPATPTFLNAGKQQRGELISC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +
Sbjct: 226 EDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQ 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKML 550
              ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A  L++++ 
Sbjct: 286 LAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598
            + FE+G+P+I F+D  N  S     G V  SNLC+EI   S+              E  
Sbjct: 343 EIQFESGYPYIMFEDTVNRAS--PVAGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDI 400

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D      TI TAVR L  V D++   ++      N    AIG
Sbjct: 401 SCNLGSLNIA-----HTMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIG 455

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPE ++  +     +++HA+  S++LA+ER   ++ F+ S +
Sbjct: 456 LGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRY 515

Query: 717 DQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +    + + E          ++   R  W +L+  V   G+ N    A+ P
Sbjct: 516 ASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRERWRQLRDDVMRYGIYNRYLQAVPP 575

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 576 TGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN-------------------- 615

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
                     +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++ 
Sbjct: 616 ----------NDNLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINK 665

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    +E + ++G 
Sbjct: 666 AQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 696


>gi|114327551|ref|YP_744708.1| ribonucleotide-diphosphate reductase subunit alpha [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315725|gb|ABI61785.1| ribonucleoside-diphosphate reductase alpha chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 650

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 217/686 (31%), Positives = 312/686 (45%), Gaps = 110/686 (16%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY +       E  Q  F RV+        +  + A   Y+ 
Sbjct: 58  DDSRDALLTDFGKATLNDRYLMPG-----ESYQDLFARVSSYY----GDNAEHAQRIYDY 108

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W 
Sbjct: 109 MSRLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVGLWNENVWLASKGGGIGSYWG 168

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++L
Sbjct: 169 NLRSIGEKVGQ-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFVEL 227

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  R+  +++    + D FM+ V  +  W L SP + S                
Sbjct: 228 RRPTGGDPNRKALNLHHGVLLSDAFMRAVDHDEEWALLSPKDKS---------------- 271

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHS 581
                      V RKISA ALW ++LT   E G P+I F D  N      Q+  G  V +
Sbjct: 272 -----------VIRKISARALWIRILTARMEQGEPYIVFSDHVNRALPEHQKLAGLEVKT 320

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC+EITL +  ++     TAVC L S+NL    A     +    + I   +  LDNV 
Sbjct: 321 SNLCSEITLPTGIDQHGKQRTAVCCLSSLNLETWHA-----WKDHPTFIEDVMLFLDNVL 375

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID    T+E+A+ S    R++GLG+MGF S L    +P+ S  A        + I  
Sbjct: 376 QDFIDRAPDTMERARYSAMRERSVGLGVMGFHSFLQAERVPFESVVAKVWNLRMFKHIRA 435

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS  LA ERGA                                             
Sbjct: 436 QADKASRMLAAERGACP------------------------------------------D 453

Query: 753 VKTIGM--RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
               G+  R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   
Sbjct: 454 AADYGLNERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQQL 513

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L +R   +E + S +  + GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I Q
Sbjct: 514 LAERGQDNEDVWSSITLNKGSVQHLDFLTEAEKAVFKTAFELDQRWIIEHAADRTPYICQ 573

Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +QS+NL+L     K  L  ++  AW  GLK+ YY RS S    +          ++   V
Sbjct: 574 SQSVNLFLPANVHKRDLHQVHMLAWKRGLKSLYYCRSLSIQRAD---------AVSEKAV 624

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
              + +  +     S T+  EC  CQ
Sbjct: 625 NLDHQAKAAPAAAVSTTNYEECLSCQ 650


>gi|114568950|ref|YP_755630.1| ribonucleotide-diphosphate reductase subunit alpha [Maricaulis
           maris MCS10]
 gi|114339412|gb|ABI64692.1| ribonucleoside-diphosphate reductase, alpha subunit [Maricaulis
           maris MCS10]
          Length = 637

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 202/680 (29%), Positives = 308/680 (45%), Gaps = 101/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L       E  Q  F RVA   A    +  + A   Y+
Sbjct: 49  IDRSRDAFLTEFGKKTLEDRYLLPG-----ESYQDMFARVATAYA----DDTEHAQRLYD 99

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL +V D L  I G   EN  LA   GG+G  W
Sbjct: 100 YISQLWFMPATPVLSNGGADRGLPISCFLNSVGDSLDDIVGTWTENVWLASNGGGIGTYW 159

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  I    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 160 GDVRSIGEKIGEI-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 218

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  +  + L SP                    
Sbjct: 219 IRKPSGDFNRKSLNLHHGLNISDAFMEAVRDDEEFELKSPKSGE---------------- 262

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHS 581
                      V + ++A  LW+K++ +  +TG P+I + D  N       ++    V  
Sbjct: 263 -----------VVKTVNARKLWQKIIELRLQTGEPYIIYSDTVNRALPAHQRKLGLKVRQ 311

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC EI L +       E TAVC L S+N   +    + + D +    R    VL + I
Sbjct: 312 SNLCAEIMLPTGFDQNGKERTAVCCLSSLNAAKYM-EWKDNPDFIEDIYRFLDNVLQDFI 370

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +++A  S    R++GLGLMG  + L  ++ P+ S  A     +  + I   A +
Sbjct: 371 DRAPAEMDRAVYSAIQERSVGLGLMGMHTLLQQMNAPFESAMAKSWNLKLFKHIRTAADA 430

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV+LA+ERGA    + S                                         +
Sbjct: 431 ASVKLAEERGACPDAEAS----------------------------------------GV 450

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC GVS  I+P   N+Y    +SG  TV N  L   L+ + L
Sbjct: 451 KARFSHKLAIAPTASISIICGGVSAGIEPIPANVYTHKTLSGSTTVKNPQLEAVLEAKGL 510

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               M + +   +GS+ ++E + +  K    TAFEID  W+IE A+ R  ++ Q+QSLN+
Sbjct: 511 NTPGMWASILEAEGSVQHLECLDEHEKATFRTAFEIDQRWVIEHAADRTPYVCQSQSLNI 570

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K  L  ++  AW  G+K+ YY RS+S   ++++   G + K +A       + 
Sbjct: 571 FLPGDVDKWDLHMLHWSAWEKGVKSLYYCRSKS---IQRAAYAGSEKKSDAEVSMAEAAP 627

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                     T   EC  CQ
Sbjct: 628 ----------TDYEECLACQ 637


>gi|330013347|ref|ZP_08307618.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328533535|gb|EGF60258.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 701

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/692 (26%), Positives = 299/692 (43%), Gaps = 79/692 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERD--FAF-EYLGLQILYDRYFLHINGSRIE 315
            + EG     +      +D  ++     + R   F F  +LG    Y  Y L     +  
Sbjct: 53  LVSEGYYDPQVLAG---YDRGFVLALFAHARRAPFRFQTFLGAWKFYTSYALKTFDGKHY 109

Query: 316 MPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
           + + F  R   VA+ LA  +   E++A +    + S  F  +TPT  N+G  +  +L SC
Sbjct: 110 L-EDFAERSVMVALTLARGD---EQQARQLTEEILSGRFQPATPTFLNAGKQQRGELISC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +
Sbjct: 226 EDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQ 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKML 550
              ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A  L++++ 
Sbjct: 286 LAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598
            + FE+G+P+I F+D  N  S     G V  SNLC+EI   S+              E  
Sbjct: 343 EIQFESGYPYIMFEDTVNRAS--PVAGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDI 400

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D      TI TAVR L  V D++   ++      N    AIG
Sbjct: 401 SCNLGSLNIA-----HTMDSPDFGRTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAIG 455

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPE ++  +     +++HA+  S++LA+ER   ++ F+ S +
Sbjct: 456 LGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRY 515

Query: 717 DQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +    + + E          ++   R  W +L+  V   G+ N    A+ P
Sbjct: 516 ASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPP 575

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 576 TGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN-------------------- 615

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
                     +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++ 
Sbjct: 616 ----------NDNLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINK 665

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    +E + ++G 
Sbjct: 666 AQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 696


>gi|238896130|ref|YP_002920866.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548448|dbj|BAH64799.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 713

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/692 (26%), Positives = 299/692 (43%), Gaps = 79/692 (11%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERD--FAF-EYLGLQILYDRYFLHINGSRIE 315
            + EG     +      +D  ++     + R   F F  +LG    Y  Y L     +  
Sbjct: 65  LVSEGYYDPQVLAG---YDRGFVLALFAHARRAPFRFQTFLGAWKFYTSYALKTFDGKHY 121

Query: 316 MPQAFFMR---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
           + + F  R   VA+ LA  +   E++A +    + S  F  +TPT  N+G  +  +L SC
Sbjct: 122 L-EDFAERSVMVALTLARGD---EQQARQLTEEILSGRFQPATPTFLNAGKQQRGELISC 177

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+ 
Sbjct: 178 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKML 237

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  +
Sbjct: 238 EDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITFQ 297

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKML 550
              ++A   LFSP +V  L   YGK F + A  +   Q    E    R I A  L++++ 
Sbjct: 298 LAKEDAQMALFSPYDVERL---YGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRLA 354

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598
            + FE+G+P+I F+D  N  S     G V  SNLC+EI   S+              E  
Sbjct: 355 EIQFESGYPYIMFEDTVNRAS--PVAGRVTMSNLCSEILQVSTPSAYNEDLSYAHIGEDI 412

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N+      +  D      TI TAVR L  V D++   ++      N    AIG
Sbjct: 413 SCNLGSLNIA-----HTMDSPDFGRTIATAVRALTAVSDMSHIQSVPSVAAGNAASHAIG 467

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y SPE ++  +     +++HA+  S++LA+ER   ++ F+ S +
Sbjct: 468 LGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGQRFAGFEQSRY 527

Query: 717 DQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +    +    + + E          ++   R  W +L+  V   G+ N    A+ P
Sbjct: 528 ASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQLRDDVMRYGIYNRYLQAVPP 587

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P    + ++           +  +N                    
Sbjct: 588 TGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMN-------------------- 627

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDF 887
                     +D   ++  A+EI P  +I++ +   + +DQ  SL L + D  + + ++ 
Sbjct: 628 ----------NDNLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINK 677

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               AW  G+KT YY+R R    +E + ++G 
Sbjct: 678 AQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 708


>gi|303232582|ref|ZP_07319268.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
 gi|302481369|gb|EFL44443.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
          Length = 766

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/781 (25%), Positives = 331/781 (42%), Gaps = 93/781 (11%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            A+     +    LT  +K P    +        E   RYIE+ +  R++H   +   L 
Sbjct: 30  AAKNDASYISLNALTR-FKTPDGRFNFSAD---KEACKRYIEQEIMPRIMHFESLPARLA 85

Query: 280 YLANDLKYER---------------------DFAFEY-LGLQILYDRYFLHINGSRIEMP 317
           Y+     Y+                       F F   +G    Y  Y LH +    ++ 
Sbjct: 86  YMVQHNYYDHTVINAYSTPFIQKLYAIAAEEHFEFTSLMGAMKFYIAYALHTDDG-AQIL 144

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTV 376
           + F  RV M         E+ A +    + +  F  +TPT  N+G  R  +  SC+L  V
Sbjct: 145 EQFEDRVVMCAMFLANGNEELAKQLVKDMMANRFQPATPTFLNAGKKRRGEYISCYLLRV 204

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D +  I   +  +  L+K  GG+    T +R   A I G   ++ GV+P +K+  DT  
Sbjct: 205 EDTMESIARGISTSLQLSKRGGGVALCLTNLRETAAPIKGFENQASGVVPVMKLLEDTFS 264

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   QN
Sbjct: 265 YANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVVIPDVTFRLAQQN 324

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               LFSP +V   +++   +  ++ +  E  A+    K +  ISA   ++ +  + FE+
Sbjct: 325 KDMALFSPYDVKREYNVALSDLSVSEKYDELCANPRIHKTY--ISARKFFQTIAELQFES 382

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGS 604
           G+P+I F+D  N  +P +  G +  SNLC+EI   S+                  CNLGS
Sbjct: 383 GYPYIMFEDTVNYCNPHKRAGRIVMSNLCSEIAQVSTPSSYTEDLSFTHVGVDVCCNLGS 442

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGF 663
           IN+         D     S +R A+  LD V   +        KK N+ + A+GLG M  
Sbjct: 443 INIARAMD----DAPHFGSLVRHAIFALDRVSRSSDLACAPSVKKGNNLNHAVGLGAMNL 498

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   HI Y SPEAV+  D     +++HA SAS +LAQ  G++S F  S +  G +  
Sbjct: 499 HGFLATHHIYYNSPEAVDFVDMFFYAMAYHAFSASCDLAQTYGSFSGFSNSEYADGSYFD 558

Query: 724 DSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
              G         +  +  EL +   +R  W  L +++K  G+ N++ MA+APT +I+ +
Sbjct: 559 KYTGADTAPSTPRVRALLAELGLTLPTRDDWVSLVEKIKVRGLANAHLMAVAPTGSISYL 618

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    +  +                         E  I  +     +I N  
Sbjct: 619 SSCTPSLQPVVSAVETRK------------------------EGKIGRVYVPAYNITN-- 652

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D+ +     A+E+    +I   +  QK +DQA SL L++  + + + L+  Y  A+ 
Sbjct: 653 ---DNYRYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDLNKAYIYAFK 709

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECEV 952
              K+ YY+R R      +  L+G +   N      +   ++ +S  +   CT  +EC+V
Sbjct: 710 KRCKSIYYVRIR------QDVLEGSEHLENDEVIAGSADGAAGNSSSVNFVCTGSSECQV 763

Query: 953 C 953
           C
Sbjct: 764 C 764


>gi|18313863|ref|NP_560530.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
 gi|18161428|gb|AAL64712.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
          Length = 849

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/837 (23%), Positives = 346/837 (41%), Gaps = 86/837 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  DG    F+  +L + V  A  GL       V      ++   +   +L   +    
Sbjct: 4   VIKLDGRREPFSHDKLRLSVIRA--GLDVCV--EVNGAVEVSVNRDVGTWELADMVQLEL 59

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                 +P  A V    LL ++ +E     + K +              F   IE G+  
Sbjct: 60  LRRAIDKPELALVAKAHLLGRIYKETFGKDFLKTKTGYRERAIAR----FKSLIEAGLLK 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRV 324
               E++  F+        + + D +  Y  L++  +  Y L     R+ E P     RV
Sbjct: 116 PEAIEALSAFE-------PRPDFDRSLSYNALRLFTNGNYALRDQNFRLAETPSMAAWRV 168

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL---- 380
           A  +A     + +RA  +Y+ ++    + ++P  FN+ TR    +SCF   V D L    
Sbjct: 169 ATAVAR----ELERAKLYYDYITQLKIVPASPFWFNAWTRKEMFASCFTLEVEDCLSSIT 224

Query: 381 ----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
               Y I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+++ +    
Sbjct: 225 HPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMRLFDANVD 284

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---V 493
            + QGGKR+GA    L  WH D+ +F+  +     D     + N + ++ D FM++   V
Sbjct: 285 VIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKD-AHLQNFNISVFVDDTFMEKALGV 343

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             ++ + L +P    D       EF     +  ++    +  V+ ++ A  L+ ++    
Sbjct: 344 DGDSKYKLINPRVFYDKTGKKAVEF----VDVHKETQVPKEAVWGEVDARQLFGEIAHGA 399

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +++G P + FK   N  +P           +   +  S N C E   N       VCNL 
Sbjct: 400 WDSGDPGLIFKSNLNASNPLLGEEIEISNYRFTYIWRSVNPCAETVQNPFE----VCNLT 455

Query: 604 SINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            INL+     N             D++ LA   R   R LD+ I+ +   I+   + N  
Sbjct: 456 HINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTGIKIIDEMNSA 515

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA+ERG +  F+
Sbjct: 516 TRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELARERGPFKFFE 575

Query: 713 GSLWDQG--------------------VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            S++ +G                    V+P +       +RD     R    P+ E    
Sbjct: 576 KSVYARGEIPVLKFQDFVWRRWERIKRVYPRELQEAGDRLRDITMRTREWLRPYLERLAD 635

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
               G+RNS  ++IAPT   + + G +  ++P +   ++++   G         +  LK 
Sbjct: 636 KVRGGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLIEYYEPGIEWLKA 695

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R  W    +  +    G + +   +P+  K + ATA EI  +W +   +  Q+W+DQ  S
Sbjct: 696 RGYWTP-QVRKVVEETGMLRDAP-VPEAAKHLLATAMEIGWLWHVLMQASAQQWVDQGIS 753

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVP 927
             + +      + + + +  AW +G+K     R +S +  V  + LK    K  A  
Sbjct: 754 KTINMPANAPQEDVYWAFAFAWAVGVKGITVYRDKSKSVQVIYTGLKQDIKKRLAET 810


>gi|94495784|ref|ZP_01302363.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
 gi|94424476|gb|EAT09498.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
          Length = 626

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/683 (31%), Positives = 312/683 (45%), Gaps = 107/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA       ++    A   Y+ 
Sbjct: 37  DASRDALLTEFGKETLNDRYLLPG-----ESYQDLFARVAAAY----SDDADHAQRVYDY 87

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 88  ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 147

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 148 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 206

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V   A + L SP +                   
Sbjct: 207 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGADFNLRSPKD------------------- 247

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 248 --------QSVRGTVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRELGLKVSTS 299

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL     +   D+   A  I   +R LDNV  
Sbjct: 300 NLCSEITLPTGRDHLGNDRTAVCCLSSMNLETW--DEWKDHPTFAEDI---MRFLDNVLQ 354

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++GLG+MGF S L   +IP+    A        + I+  
Sbjct: 355 DYIDRAPPEMARAKYSAMRERSVGLGVMGFHSFLQARNIPFEGAMAKSWNLRIFKQINAK 414

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              AS+ LAQERG          DQGV                                 
Sbjct: 415 VNEASMLLAQERGPCPD----AADQGVME------------------------------- 439

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L  
Sbjct: 440 -----RFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVA 494

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +     A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 495 KAKDSTAVWNSILERGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQS 554

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A    D 
Sbjct: 555 LNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA------GFAGGVEADNTIDA 608

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                +       T+  EC  CQ
Sbjct: 609 PRFEIAET-----TNYDECLACQ 626


>gi|270307983|ref|YP_003330041.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153875|gb|ACZ61713.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 599

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/640 (26%), Positives = 288/640 (45%), Gaps = 83/640 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYN 344
                  ++L  RY     +G  IE P+  F RVA  +A  E +        +   EFY 
Sbjct: 15  RLSTTAKRVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYAPGADISRIEEEFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +    F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  +
Sbjct: 75  AMFRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+ 
Sbjct: 135 SDLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFIS 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D     +   +  +   FM +V     + + +P                    
Sbjct: 195 CKG----DPNALTNFYISVVVTRDFMTKVRNGEDYDIINPHTGE---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V ++++A  ++ +++   ++TG P + F D  N  +P   +G +   + 
Sbjct: 235 -----------VVQRLNAACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSG 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N 
Sbjct: 284 CGEQTLLPYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNK 339

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               + +K+   +R +GLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS +
Sbjct: 340 FPTPEIEKATLRNRKVGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSK 399

Query: 701 LAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           LA+ RG++ +++GS++D  G  P                                   MR
Sbjct: 400 LAEVRGSFPAYEGSIYDVPGGRP-----------------------------------MR 424

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+  +  +    E+ +R  +   
Sbjct: 425 NATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGGFHSK 484

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
            + +       + +IE IPD LK++  TA  I P W I   +  QK+ D A S  +    
Sbjct: 485 ELFEKLVSSNHLHDIECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTVNFSH 544

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           E + + +  ++  A+  GLK     R  S  +    T + 
Sbjct: 545 EATREDMANVFNMAYDKGLKGITVYRDGSRAAQPLCTCES 584


>gi|213052491|ref|ZP_03345369.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424575|ref|ZP_03357364.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213650064|ref|ZP_03380117.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213864814|ref|ZP_03386933.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289824436|ref|ZP_06544025.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 705

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+ +
Sbjct: 299 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 678

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 679 IKSLYYIRLRQLA-LESTEIEGC 700


>gi|16761589|ref|NP_457206.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143069|ref|NP_806411.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25328484|pir||AG0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503890|emb|CAD05918.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138702|gb|AAO70271.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 714

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/743 (25%), Positives = 309/743 (41%), Gaps = 86/743 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 15  DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 72  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 130

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 131 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 187

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 188 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 248 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 307

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+ +
Sbjct: 308 LFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYLY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 366 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 423

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 424 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 479 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 630

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMG 896
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     AW  G
Sbjct: 631 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +K+ YY+R R    +E + ++G 
Sbjct: 688 IKSLYYIRLRQLA-LESTEIEGC 709


>gi|319789960|ref|YP_004151593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
 gi|317114462|gb|ADU96952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/634 (27%), Positives = 284/634 (44%), Gaps = 89/634 (14%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNL 345
                 ++IL  RY         E PQ  F RVA  ++  E      ++  +   EF  +
Sbjct: 3   KLSETAIEILKARYLRPG-----ETPQELFERVARAVSEAELLYGPASQAARWEEEFLKV 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           + +  F+ ++PTL N+GT   QL++CF+  V D +  IF ++   A + K  GG G  ++
Sbjct: 58  MENLEFLPNSPTLMNAGTPLGQLAACFVLPVEDSIEEIFASVSLMAKIQKTGGGTGFSFS 117

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  TNGK+ G + F+KV N    A+ QGGKR+GA    L   H DV+EF+  
Sbjct: 118 RLRPKGDTVKSTNGKASGPVSFMKVFNCATDAIKQGGKRRGANMGVLSVNHPDVKEFITC 177

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D +   + N +    D F ++  +     L +P +                   
Sbjct: 178 KT----DGKSFQNFNISVACTDDFFQKALKGGEIELINPRDGK----------------- 216

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V+ ++ A  L   +    ++TG P I + D  N  +P   +G + ++N C
Sbjct: 217 ----------VWSRVKADELLDLIAESAWKTGDPGILYIDEINRHNPTPALGRIEATNPC 266

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E+ L    E    CNLGSINL       + +++KL   ++ AVR LD VID+N +   +
Sbjct: 267 GEVPLLPYEE----CNLGSINLSKIVEKGRINWEKLERLVKVAVRFLDCVIDVNRYPHPE 322

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K    +R IGLG+MG+   L  L IPY S EAVE+A+  M FI+  A  AS ELA+++
Sbjct: 323 IEKMAKGNRKIGLGVMGWAELLIELEIPYDSEEAVELAERLMGFINRKAFEASAELAKQK 382

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ +   S++                                     +   +RN+   +
Sbjct: 383 GSFPNIDKSVY-------------------------------------RGKTLRNATRTS 405

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I G + SI+P +   YVK  + G     +   L+ ++K+  L     I   
Sbjct: 406 IAPTGTISMIAGTTPSIEPLFAVGYVKRVLGGRRVPFIEPLLMKKVKELSLQQLKEI--- 462

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
               G++   E IP+ +K+I  TA EI P W ++  +  QK  D A S  + L    + +
Sbjct: 463 -LESGTLQRAEGIPEKIKRIFKTAHEIAPEWHLKIQAAFQKHTDNAVSKTVNLPKSATPE 521

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            +  I+   + + LK     R  S   V +  + 
Sbjct: 522 DIKEIFITGYKLKLKGVTVFREGSKEGVVEFKVD 555


>gi|311278370|ref|YP_003940601.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747565|gb|ADO47317.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 714

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/716 (25%), Positives = 302/716 (42%), Gaps = 77/716 (10%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
              + + +P  A     Q    E     +  G     +     +   V           F
Sbjct: 43  AFMSAHVQPNSAIFASAQ----ERLDWLVAGGYYDEAVLT-RYEQAFVTDLFACASAYGF 97

Query: 292 AF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F  +LG    Y  Y L   +G R  E      + VA+ LA  +   E  A +  + + S
Sbjct: 98  QFQTFLGAWKFYTSYTLKTFDGKRYLEHFPDRVVMVALTLAQGD---EALARQLTDEMLS 154

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N G     +L SCFL  + D++  I  A+     L+K  GG+    + +
Sbjct: 155 GRFQPATPTFLNCGKMQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 214

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 215 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKR 274

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +NA   LFSP +V  L+     +  +  E YE+
Sbjct: 275 ENADEKIRIKTLSLGVTIPDITFRLARENARMALFSPYDVERLYGKAFGDIAVT-EMYEQ 333

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 ++    ISA   ++ +  + FE+G+P+I F+D  N  S     G ++ SNLC E
Sbjct: 334 LVADARVRK-TWISAREFFQTLAEIQFESGYPYIMFEDTVNRAS--PVAGRINMSNLCAE 390

Query: 588 ITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +S+ E               CNLGS+N+      +  D      T+ TAVR L  V
Sbjct: 391 ILQVNSASEFDENLDYARVGRDISCNLGSLNIA-----HTMDSPDFGRTVATAVRALTAV 445

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D++    +   +  N    AIGLG M     L    I Y SPEA+E  +     I++HA
Sbjct: 446 SDMSHIRAVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALEFTNLYFCAITWHA 505

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLP 745
           ++ S+ LA+ER  +++ F  S +  G +    +    + + ++         +   +R  
Sbjct: 506 LNTSMLLARERGQSFAGFAQSRYASGEYFAAYLEGDWQPKTQVVRTLFQRAGITLPTRDM 565

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNS 804
           W +L+  V   G+ N N  AIAPT +I+ I   + SI P    + ++    +G       
Sbjct: 566 WRQLRDAVMRYGIYNQNLQAIAPTGSISYINHATSSIHPVASKIEIRKEGKTGRVYYPAP 625

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           F+ N                               D   ++  A++I P  +I++ +   
Sbjct: 626 FMTN-------------------------------DNLHLYQDAYDIGPEKIIDTYAEAT 654

Query: 865 KWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           K +DQ  SL L + D  + + ++     AW  G+KT YY+R R    +E + ++G 
Sbjct: 655 KHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIRLRQLA-LEGTEIEGC 709


>gi|323700021|ref|ZP_08111933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. ND132]
 gi|323459953|gb|EGB15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans ND132]
          Length = 749

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/648 (27%), Positives = 298/648 (45%), Gaps = 86/648 (13%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVEFYNL 345
                 +L  RY      G   E  +  F RVA  +A +E + E       K A +FY+L
Sbjct: 16  NENAKIVLQRRYQRKDTEGVVYETVKELFWRVASAIAAEEAKYERSTVKPAKLARDFYDL 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S+ F+ ++PTL N+GT   QL++CF+  V DD+ GIF A++  AM+ K  GG G  ++
Sbjct: 76  MTSYRFLPNSPTLMNAGTDLGQLAACFVLPVADDIEGIFDAVKHAAMIHKSGGGTGFAFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   + +  T G + G + FLK+ N     + QGG R+GA    L   H D+ EF+  
Sbjct: 136 RLRAKDSVVGSTGGVASGPLSFLKIFNCATEQIKQGGTRRGANMGILRIDHPDIMEFIKA 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G+     ++ N +  + + FM+ V + A + L +P+                    
Sbjct: 196 KERDGE----LNNFNLSVGLTEAFMQAVNEKADYNLIAPNTGE----------------- 234

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++A  ++  ++   +E+G P I F D  N  +P   +G + S+N C
Sbjct: 235 ----------AVGTLNARDVFNILVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDIN 639
            E  L         CNLGSINL   FA        + D+D+L   I  +VR LDNVID +
Sbjct: 285 GEQPLLPYE----ACNLGSINLGLCFAKGRNGKDSEIDWDELKRIIHLSVRFLDNVIDAS 340

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +++  +    +R IGLG+MG+   L+ L IPY S  AV++A+  M+F+   + SAS 
Sbjct: 341 VYPLDQITEMVGKNRKIGLGVMGWADLLYQLQIPYNSQTAVDMAERVMKFVQAESRSASK 400

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA ERG + ++  S + +                                        R
Sbjct: 401 QLATERGQFPAYPESTFGKANL----------------------------------GPYR 426

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDE 818
           N+    IAPT T++ I G S  ++P +   +V++ M  D     N +    L   D +  
Sbjct: 427 NATTTTIAPTGTLSIIAGCSSGVEPLFALSFVRNVMDNDKLVETNPYFEAALNSADAYSG 486

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-L 877
            ++ ++    GSI  ++ +P+ L+ ++ T+ +I+P+W ++  +  QK+ D A S  +   
Sbjct: 487 KLMEEI-AKVGSIKKMDHLPEHLRHVYVTSMDIEPIWHLKMQAAFQKYTDNAVSKTVNLP 545

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +  + + +  IY +A+  G K     R  S TS    T  G   K  A
Sbjct: 546 NSATKEDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKKEAA 593


>gi|296118679|ref|ZP_06837255.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968168|gb|EFG81417.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 723

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 181/766 (23%), Positives = 312/766 (40%), Gaps = 76/766 (9%)

Query: 180 IVLSETYKNMYDGLSESD-LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
            V  +  K + + +  S+ L+   + +   L +++          +   + RE     + 
Sbjct: 3   QVTQQLGKTVAEPVKTSEKLDFHALNALLNLYDEDGK--------IQFDMDREAANQYFL 54

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLG 297
           +           L  E     +E       + E+  D++ +       Y   F F  +LG
Sbjct: 55  QHVNQNTVYFHDL-EEKIEYLVENKYYEPEVIEA-YDWEFIKSLFKRAYSFKFRFKSFLG 112

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
               Y  Y L     R  + + F  RV+M            A    + + S  F  +TPT
Sbjct: 113 AYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDEIMSGRFQPATPT 171

Query: 358 LFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I  
Sbjct: 172 FLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIKH 231

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
              +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R 
Sbjct: 232 IENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRI 291

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             ++    IPD+      +N    LFSP +V  ++     +  +  E+Y    +   I  
Sbjct: 292 KTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVT-EHYAEMVEDPRI-T 349

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI   +S   
Sbjct: 350 KKKINARHFFQTVAELQFESGYPYIMFEDTVNDANPVK-TGRINMSNLCSEILQVNSPSS 408

Query: 597 ------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTI 643
                          CNLGS+N+         D    + T+  A+R L  V D     ++
Sbjct: 409 FNADLSYEQMGSDISCNLGSMNIAL-----AMDSPDFSGTVEAAIRGLTAVADKTAIDSV 463

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
              +  N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+
Sbjct: 464 PSIRHGNDQSHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYAALRASNKIAK 523

Query: 704 ER-GAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ER   +S FK S +  G F               +  +  +  ++  S   W +LK +V 
Sbjct: 524 ERGETFSEFKDSEYASGAFFDRYDPAEFAPQTDKVKALFADSTIHTPSAEDWADLKAQVM 583

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ N N  A+ PT +I+ I   + SI P    + ++                      
Sbjct: 584 EHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK--------------------- 622

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E  I  + Y          + +D       A+EI    +I++ +   K++DQ  SL 
Sbjct: 623 ---EGKIGRVYYPA------PHMDNDNLDYFQDAYEIGHEKIIDTYAIATKYVDQGLSLT 673

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+  D  + + ++     AW  G+KT YY+R R       + ++G 
Sbjct: 674 LFFKDTATTRDINKAQIYAWRKGIKTLYYIRLRQMALA-GTEIEGC 718


>gi|301058132|ref|ZP_07199184.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
 gi|300447764|gb|EFK11477.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
          Length = 830

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/713 (25%), Positives = 306/713 (42%), Gaps = 83/713 (11%)

Query: 216 YAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCR-YIEEGVKARLLHESM 273
           Y     RF    +R+  +         +    E+  L  +      IE  ++A+L    +
Sbjct: 20  YNWDDNRFSDFLVRKNAIDPDQAMDVSRFLRKEIAKLELQTITMPIIEHMIEAKLREFGL 79

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE 332
                + L      ++        +++L  RY      G  IE P+  F RVA  +A  E
Sbjct: 80  SAMSPLRLDKSFFVKQGLELSDNAVRVLERRYLRQDKEGRAIETPEEMFARVAHHIAQAE 139

Query: 333 TEK--EKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                E R  +    FY L++ F F+ ++PTL N+G    QL++CF+  V D + GIF +
Sbjct: 140 KRYGGEDRIKDVEAVFYRLMTEFKFLPNSPTLMNAGRELGQLAACFVLPVEDSMDGIFDS 199

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+  A++ K  GG G  ++ +R   + +  T G + G + F+K+ N     V QGG R+G
Sbjct: 200 LKNAALIHKSGGGTGFSFSRLRPKKSRVGTTGGIASGPVSFMKIFNTATEQVKQGGTRRG 259

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A  A L   H D+ EF+D +KN  +     ++ N +  + D FM+ V  +  + L  P  
Sbjct: 260 ANMAILRVDHPDILEFIDCKKNNEE----LNNFNISVGVTDAFMESVKADTNYDLIDP-- 313

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                       +   +++A  ++  ++   +E G P I F D 
Sbjct: 314 -------------------------RNGRKTGQLNAKEVYDALIQRAWENGDPGIVFLDK 348

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLA 622
            N  +P   +G + S+N C E  L         CNLGSINL     +       DY  L 
Sbjct: 349 VNQDNPTPGLGEIESTNPCGEQPLLPME----ACNLGSINLAKFVVDTDEGPAVDYAGLK 404

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R +V  LDN ID++ + + +  +    +R IGLG+MGF   L+ L IPY S +A+E 
Sbjct: 405 EVVRESVHFLDNTIDMSRYPLPEIGEMVRGNRKIGLGVMGFADLLYQLRIPYDSEKALET 464

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A+  M F+   +  AS +LA+ERG + +F  S++                          
Sbjct: 465 AEAVMGFVQEASHQASRQLAEERGVFGNFDKSVF-------------------------- 498

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
                   KR K    RN+    IAPT T++ I G S  I+P +   + ++ M  D  V 
Sbjct: 499 --------KRRKDCSYRNATTTTIAPTGTLSIIAGCSSGIEPLFALSFARNVMDNDRLVE 550

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            +    E  ++  +  + + D+    G+I NI  IP + + +  TA +I P W +   + 
Sbjct: 551 TNPYFEETAKKKGYFSSELMDIVAQKGTIHNINEIPAEDRAVFVTAHDIVPEWHLRMQAA 610

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            Q+  D A S  + L  + + + +  +Y  A+ +  K     R  S  +   S
Sbjct: 611 FQRHTDNAVSKTVNLPRDATVEDVKEVYDLAYELSCKGVTIYRDGSKENQVLS 663


>gi|327311809|ref|YP_004338706.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
 gi|326948288|gb|AEA13394.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
          Length = 877

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 205/845 (24%), Positives = 359/845 (42%), Gaps = 91/845 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K++   G    F+ ++L + +  A +         V  E        ++ ++L   + 
Sbjct: 29  AVKVIKASGAKEDFSEEKLRISLVRAAAD----VGVSVDGEVKIRPTSDITSAELSDLVE 84

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                    +P  A+     LL ++ +E L   + + +          Y E     +E  
Sbjct: 85  LELLRKAIDKPELAEAAKSHLLGRIYKEALGKDFLRDKS--------KYGERVFASVERL 136

Query: 264 VKARLLHESMMDF-DLVYLANDLKYERDFAFEYLGLQILYD-RYFLHI-NGSRIEMPQAF 320
           V A LL +  +     V L    K E D +  Y  L++  +  Y L   +    E P A 
Sbjct: 137 VSAGLLKQEALSALRWVEL----KPEFDRSLSYNALRLFTNGNYALRGPDFKIAETPAAA 192

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
                  +A       + A  +Y+ ++S   + ++P  FN+ T+    +SCF   V D L
Sbjct: 193 A----ARVATAVAGSPEAARLYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCL 248

Query: 381 --------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                   Y I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G I F+K+ +
Sbjct: 249 SSLTHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMKLFD 308

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                + QGGKR+GA    L  WH D+ +F+  +     D     + N + ++ D FM++
Sbjct: 309 ANVDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKD-AHLQNFNISVFVDDTFMEK 367

Query: 493 ---VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
              V QN  + L +P    D       E    Y    ++A+     ++ ++ A  L+R++
Sbjct: 368 ALGVDQNPKYPLINPRVFYDKTGQKAVEHVDVY----KEAEVPRDAIWGEVDASQLFREI 423

Query: 550 LTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAV 599
               +++G P + FK   N  +P           +   +  S N C E   N       V
Sbjct: 424 SNSAWDSGDPGLIFKANLNASNPLLGEEIEVAGYRFTYIWRSVNPCAETVQNPFE----V 479

Query: 600 CNLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           CNL  INL+    +N             D++ LA   R   R LD+ ID +   IE   +
Sbjct: 480 CNLTHINLVKFIKDNCAGSSFEEKLACIDWEGLAQAARLGTRFLDSAIDRSRTGIEIVDE 539

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            N   R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+ AS +LA+E+G +
Sbjct: 540 MNSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDASADLAREKGPF 599

Query: 709 SSFKGSLWDQGVFP--------IDSIGLLAEVRDELAMNRTSRL--------PW-----D 747
             F+ S++ +G  P              +  V      +   RL         W     +
Sbjct: 600 KYFEKSIYARGELPALKFQDFVWSRWERVKHVYPPELRDAGDRLREITERTRQWLLPYIE 659

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK++VK  G+RNS  ++IAPT   + + G +  I+P +   ++++   G         +
Sbjct: 660 KLKEKVKG-GVRNSVVLSIAPTGRTSILAGTTSGIEPVFALAFLRNVTVGTLVEYYEPGI 718

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             LK R LW  A+   ++   G + +   +P+D+K + ATA EI  +W +   +  Q+W+
Sbjct: 719 EYLKARGLWTPAVRKAVE-ETGMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWV 776

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST--LKGVDGKLN 924
           DQ  S  + +        + + +  AW +G+K     R +S +     T   + +  KL 
Sbjct: 777 DQGISKTINMPANAPSDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLA 836

Query: 925 AVPVT 929
              +T
Sbjct: 837 ETKIT 841


>gi|25028979|ref|NP_739033.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           efficiens YS-314]
 gi|23494266|dbj|BAC19233.1| ribonucleotide reductase alpha chain [Corynebacterium efficiens
           YS-314]
          Length = 721

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 182/718 (25%), Positives = 302/718 (42%), Gaps = 74/718 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L+ E     +E     + + +   DF+ +       Y  
Sbjct: 45  REAANQYFLQHVNQNTVFFHNLH-EKLDYLVENNYYEKEVLDK-YDFEYIKDLFKRAYSY 102

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L     R  +E  +     VA+ LA  + E    A    + +
Sbjct: 103 KFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDRE---TANALVDEI 159

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  NSG  +  +  SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 160 MTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLS 219

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 220 NLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDT 279

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYEN 524
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  +   YGK F +I+   
Sbjct: 280 KRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERI---YGKPFADISVTE 336

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +    +     KI+A   ++ +  + FE+G+P+I F+D  N  +     G V  SNL
Sbjct: 337 LYNEMVDDDRIRKTKINARQFFQTLAEIQFESGYPYIMFEDTVNEAN--PIEGRVTHSNL 394

Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI   S+              E   CNLGS+N+         D    + TI TA+R L
Sbjct: 395 CSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-----AMDSPDFSRTIETAIRGL 449

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V +     ++   +K N    AIGLG M     L   HI Y S E ++  +     + 
Sbjct: 450 TAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVL 509

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTS 742
           +  + AS ++A+ER   +++F+ S +  GV+     P +      +V++  A   ++  +
Sbjct: 510 YECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPT 569

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +LK  V   G+ N    A+ PT +I+ I   + SI P    + ++          
Sbjct: 570 AEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTSSIHPIASKIEIRK--------- 620

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                          E  I  + Y          + +D  +    A+EI    +I++ + 
Sbjct: 621 ---------------EGKIGRVYYPA------PHMDNDNLEYFQDAYEIGYEKIIDTYAV 659

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 660 ATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEIDGC 716


>gi|83589985|ref|YP_429994.1| ribonucleotide-diphosphate reductase subunit alpha [Moorella
           thermoacetica ATCC 39073]
 gi|83572899|gb|ABC19451.1| Ribonucleotide reductase large subunit [Moorella thermoacetica ATCC
           39073]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/669 (26%), Positives = 284/669 (42%), Gaps = 88/669 (13%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----------RVAMGLALKETEKEKRAV 340
                    IL  RY    NG  +E P+  F           R+    AL E + E+ A 
Sbjct: 1   MKITDNARTILEKRYLKKENGVPVETPEEMFRRVAAAVAGAERI-FNPALTEAQVEEYAD 59

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            FY L++S+ F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG 
Sbjct: 60  RFYRLMTSWDFLPNSPTLMNAGRELGQLSACFVLPVDDSMDAIFTAVKDAALIHKSGGGT 119

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R   + +  T G + G + F+KV N    A+ QGG R+GA    L   H D+ 
Sbjct: 120 GFSFSRLRPKNSPVRSTGGVASGPVSFMKVFNAATEAIKQGGTRRGANMGILRVDHPDIL 179

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+  ++N  +      + N +  +   FM  + ++  + L                   
Sbjct: 180 EFISCKENNNE----LTNFNISVGLTREFMDALARDDYYELKF----------------- 218

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E +V++++ A  ++ +++   +  G P I F D  N  +P   +G + 
Sbjct: 219 ------------EGRVYQRLKAQEVFAEIVNHAWANGEPGIIFLDRLNEDNPTPELGEIE 266

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ++N C E  L         CNLGS+NL     +   ++DKLA T+R AVR LDNVI+IN 
Sbjct: 267 ATNPCGEQPLLPYE----ACNLGSVNLANMVRDGGVNWDKLADTVRLAVRFLDNVIEINE 322

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +EK       +R IGLG+MG+   L  L +PY S EAVE+  + M FI   A  AS +
Sbjct: 323 FPLEKISVMVRGNRKIGLGVMGWADMLFQLRLPYDSEEAVELGRKVMAFIQKEAHGASRD 382

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG++ +   S++                                     +   +RN
Sbjct: 383 LAGERGSFPNIDKSIY-------------------------------------RGQQLRN 405

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + C  IAPT TI+ I G +  I+P +   Y K+ + G   V  + +     + +   E  
Sbjct: 406 ATCTTIAPTGTISMIAGTTSGIEPVFALAYTKNVLDGASLVEVNPVFQAYVEENFPPEQA 465

Query: 821 --ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
             I +       +  IE IP +++++  TA EI P W I   +  Q   D A S  +   
Sbjct: 466 RSIFNRIAAGARVSEIEYIPPEMRRVFVTALEISPEWHIRMQAAFQASTDNAVSKTVNFP 525

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E + + +   Y  A+ +G K     RS S       T        +  P  +       
Sbjct: 526 SEATREDVRRAYELAYQLGCKGVTVYRSGSREKEVLITGAKNKPVRDREPAREKTYPRPR 585

Query: 938 LGIPSSCTS 946
                  T 
Sbjct: 586 PKRTCGVTE 594


>gi|241761976|ref|ZP_04760061.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373656|gb|EER63228.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 613

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/683 (30%), Positives = 309/683 (45%), Gaps = 108/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDG------------------ 236

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 237 ---------TKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL+         +      I   +R LDNV  
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQ-----WHDNKRFIEDVMRFLDNVLQ 342

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  
Sbjct: 343 SYIDNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTK 402

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS+ LA+ERGA         D GV                                 
Sbjct: 403 ANEASMMLAKERGACPD----AADMGVME------------------------------- 427

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ 
Sbjct: 428 -----RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQD 482

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    + + + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 483 KSKDSDTVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQS 542

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A      
Sbjct: 543 LNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------GFAGGVEA------ 590

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
           +++     I     +  EC  CQ
Sbjct: 591 DNTPQMRQIEVEMRNYDECLACQ 613


>gi|254233681|ref|ZP_04927006.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
 gi|124599210|gb|EAY58314.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
          Length = 732

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/721 (24%), Positives = 291/721 (40%), Gaps = 83/721 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRN 697

Query: 896 G 896
           G
Sbjct: 698 G 698


>gi|254555735|ref|YP_003062152.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308179715|ref|YP_003923843.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|254044662|gb|ACT61455.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308045206|gb|ADN97749.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 721

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/713 (22%), Positives = 290/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  +    +   L   +   Y+ E            DF  +    D    +D
Sbjct: 33  EALAAFLEQNVEPNTMKFDSLKARF--DYLREHDYLETPAIDKYDFSFIEKLYDYLRSQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  +     + + F  RVAM         E  A++  + +   
Sbjct: 91  FHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFADGNEDLAMDLADEIVHQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQLSRIGGGVGINLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 GAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + +  +A   LFSP  V   + +     +I  E Y+  
Sbjct: 270 NADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYGVPFSYVDITKE-YDNM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E+
Sbjct: 329 VKNPNIRKTK-IKARDLENEISKLQQESGYPYVVNIDTANREN--PIDGKIVMSNLCSEV 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N++    +  F       ++   VR L  V 
Sbjct: 386 MQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF-----GHSVEAMVRALTFVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +K N     IGLG MG  +      + Y S EAV+  +     +++  +
Sbjct: 441 DHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEAVDFTNIYFLLLNYWTL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS E+A+E    + +F+ S +  G +         + + +        +   ++  W+ 
Sbjct: 501 KASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTTALFDGIFIPTKADWEA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   + S+ P    +  +                
Sbjct: 561 LKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHPIINRVEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + +D    + +A++ D   +I+  +  Q+ +D
Sbjct: 606 ---------EKKIGKIYYPA------PYLSNDTINYYKSAYDTDMRKVIDVYAAAQQHVD 650

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 651 QGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNYAYRKGIKSIYYIRT 703


>gi|282599258|ref|YP_003358570.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
 gi|226973564|gb|ACO94317.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
          Length = 759

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/807 (23%), Positives = 343/807 (42%), Gaps = 80/807 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG+ + F+ ++   +V+ AC GL  VS   V++ +     D +    ++  LI 
Sbjct: 2   INVIKRDGSSVPFDIEKPHEVVDRACDGLTGVSMSEVIAASKIQFTDNMRTDRIQDILIQ 61

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++ +LI  + PNY  V AR     LR+ V    YK P             + F + I++ 
Sbjct: 62  AAASLISVDKPNYQYVAARLKSYDLRKAVYGQ-YKPPHLL----------DIFVKNIKQR 110

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQ 318
           V  R   +     +   L + + ++RD  F +  +  L ++Y L     +      E PQ
Sbjct: 111 VYDREFLDLYTTEEFNELNDVINHKRDKNFTWAAMGQLTEKYLLRDRSKKDSKIFYETPQ 170

Query: 319 AFFMRVAMGLALK-ETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M +AM L    + + + +   +FY   S+  F   TP +    T   Q SSC L   
Sbjct: 171 VMYMGIAMALFSNWDKDSRLEMVKKFYEYASTGKFSLPTPIMAGVRTPTRQFSSCVLIKT 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I    +          G+G D   +RG+G+ I G      G+IPF+K       
Sbjct: 231 GDTLDSINATAKTIVDYVSKRAGIGFDVGAIRGIGSPIRGGEMVHTGLIPFIKYLTGALK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA  AY+  WH   ++ + L+ N G +  R   ++    I  +  +R+   
Sbjct: 291 SCSQGGIRGGAATAYIPLWHYQFDDVVVLKNNRGTEENRERRIDYGIQINRVMFERLVAK 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF--RKISAVALWRKMLTMLF 554
               LF P +  ++++ Y  + +     YE      +  +   +K+ A  +++ +L    
Sbjct: 351 QPLYLFDPKDNREMYEAYFADVDKFRTLYENMIKAADAGLVRSKKLQAEEVFQMLLDQRS 410

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSIN 606
           +TG  +I F D  N  SP  ++  ++SSNLC EI          N  +   A+C L S N
Sbjct: 411 DTGRIYIAFVDHMNEYSPF-NLDTIYSSNLCLEIALPTREFEQYNDENGRVALCTLASFN 469

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A       D  ++       V  LD +++   +   +A+K+   +R +G+G++     
Sbjct: 470 LTAFE-----DPTEMEDVAFVLVSALDMLLEYQDYPAIQARKAVEDYRPLGVGIVNVAHF 524

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y SP  +E+ D  M  + F+ + AS  LA + GA    +G++   G    D  
Sbjct: 525 LAKNFTGYGSPAGLEMLDAWMAHLHFYLVKASNRLAMKFGACK--RGTIHGMGQVTADLQ 582

Query: 727 GLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            L  ++    +        L WD+LK  +KT G+RN+  +A+APT + + +   +  I+P
Sbjct: 583 PLPLDILPNGKKPEGMAYGLDWDDLKDDLKTYGIRNATLLAVAPTESSSQVLNATNGIEP 642

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + +K +  G +  V   +                                + L  +
Sbjct: 643 PKGLVSIKGSKDGTYKQVVPDV--------------------------------ETLGPL 670

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK----KLDFIYRQAWLMGL 897
           +   +++D +  +++A+  Q+W+DQ+ S N + D    P GK    K+       ++ G 
Sbjct: 671 YDLKWDLDCIEYLKTAAVIQRWVDQSISTNTWYDPEKYPDGKIPRAKMMQDILSFYMWGG 730

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KT YY  ++ A   E   LK  +   +
Sbjct: 731 KTLYYNTNKDAK--EDEELKQAEEVCD 755


>gi|315654124|ref|ZP_07907040.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
 gi|315488820|gb|EFU78466.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
          Length = 725

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/726 (26%), Positives = 314/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E Y++     +      ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKE-YDKLVANPK-IKKTYISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDRVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTANIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNTNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|300087825|ref|YP_003758347.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527558|gb|ADJ26026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 592

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/638 (27%), Positives = 282/638 (44%), Gaps = 83/638 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343
                  L++L  RY    + G  +E P   F RVA  +A  E +          A EFY
Sbjct: 10  LNLTPNALRVLEKRYLRRDSRGEVVETPAELFRRVADAVASAERKYASDTSVRYIADEFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            ++S   F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  A + K  GG G  
Sbjct: 70  RIMSGLLFLPNSPTLLNAGTTSGQLSACFVLPVEDSIEAIFEAVKYTAQIHKSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  VR +G  + G    + G +  + V +  A  V QGG R+G     L   H D+ +F+
Sbjct: 130 FAHVRPVGDDVDGRADAATGPVALIDVFSKAADYVRQGGIRRGCNSVVLPVDHPDIMDFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D     +   +  + D FM+RV     + L  P                   
Sbjct: 190 KAKA----DPLSLTNFYISVAVTDDFMRRVKTGQDYPLIYP------------------- 226

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      ++   ++A A++ +++   + TG P   F D  N  +P  H+G +   +
Sbjct: 227 --------RNGQITGWLNAGAVFDRIVDQAWSTGDPGFVFIDQINRANPTPHLGRIEIIS 278

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDIN 639
            C E TL         CNLGSINL      +      D+D L   +  AVR LDNVID+N
Sbjct: 279 GCGEQTLLPYES----CNLGSINLAKMVKLDNNRTVVDFDTLKDVVSLAVRFLDNVIDVN 334

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              I + ++     R IGLG+MGF   L+ + IPY S  AV+IA E M FI   A   S 
Sbjct: 335 KFPISRIEEMTKRTRKIGLGVMGFADMLYQMGIPYNSESAVKIAREVMRFIKDEAHRTSR 394

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA+ERG + +FKGS++D+                                       MR
Sbjct: 395 LLARERGPFPAFKGSIYDREGLEP----------------------------------MR 420

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDE 818
           N+ C  +APT T++ I G S  I+P +  ++V++ + G+    VN      +K   ++ E
Sbjct: 421 NAACTTVAPTGTLSIIAGCSSGIEPVFAGVFVRNILDGENLLEVNPHFEKAVKDAGVYSE 480

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            +++ L   +  + +   +P++++KI  TA ++ P W ++  +  Q++ D A S  +   
Sbjct: 481 ELLARLVKCN-HLHDQHDVPEEIRKIFVTAHQVSPEWHVKIQAAFQEFTDNAVSKTVNFA 539

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + + ++L  ++R A+  GLK     R  S       T
Sbjct: 540 RQATREELASVFRMAYESGLKGITVYRDDSRELQPLCT 577


>gi|28377562|ref|NP_784454.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum WCFS1]
 gi|28270394|emb|CAD63297.1| ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           plantarum WCFS1]
          Length = 721

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/713 (22%), Positives = 290/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  +    +   L   +   Y+ E            DF  +    D    +D
Sbjct: 33  EALAAFLEQNVEPNTMKFDSLKARF--DYLREHDYLETPAIDKYDFSFIEKLYDYLRSQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  +     + + F  RVAM         E  A++  + +   
Sbjct: 91  FHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFADGNEDLAMDLADEIVHQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQLSRIGGGVGINLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 GAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + +  +A   LFSP  V   + +     +I  E Y+  
Sbjct: 270 NADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYGVPFSYVDITKE-YDNM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E+
Sbjct: 329 VKNPNIRKTK-IKARDLENEISKLQQESGYPYVVNIDTANREN--PIDGKIVMSNLCSEV 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N++    +  F       ++   VR L  V 
Sbjct: 386 MQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF-----GHSVEAMVRALTFVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +K N     IGLG MG  +      + Y S EAV+  +     +++  +
Sbjct: 441 DHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEAVDFTNIYFLLLNYWTL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS E+A+E    + +F+ S +  G +         + + +        +   ++  W+ 
Sbjct: 501 KASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTAALFDGIFIPTKADWEA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   + S+ P    +  +                
Sbjct: 561 LKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHPIINRVEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + +D    + +A++ D   +I+  +  Q+ +D
Sbjct: 606 ---------EKKIGKIYYPA------PYLSNDTINYYKSAYDTDMRKVIDVYAAAQQHVD 650

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 651 QGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNYAYRKGIKSIYYIRT 703


>gi|309804853|ref|ZP_07698915.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165792|gb|EFO68013.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
          Length = 725

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/726 (26%), Positives = 315/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E     A+    K +  ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKEYDNLVANPKIKKTY--ISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD+V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKTMD----DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|309804069|ref|ZP_07698150.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308163837|gb|EFO66103.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
          Length = 725

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/726 (26%), Positives = 315/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FQERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E     A+    K +  ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKEYDNLVANPKIKKTY--ISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD+V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|312871261|ref|ZP_07731359.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312874780|ref|ZP_07734799.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089525|gb|EFQ47950.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311093275|gb|EFQ51621.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
          Length = 725

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/726 (26%), Positives = 314/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E Y++     +      ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKE-YDKLVANPK-IKKTYISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDRVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|269839439|ref|YP_003324131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269791169|gb|ACZ43309.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 598

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 181/659 (27%), Positives = 290/659 (44%), Gaps = 90/659 (13%)

Query: 292 AFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMG------LALKETEKEKRAVEFYN 344
                 L +L +RY         IE P   F RVA        L    ++    A  FY 
Sbjct: 5   KLSTNALIVLEERYLRRNAKLEIIETPAEMFWRVARAVADADALYGPRSQVAATAERFYQ 64

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            ++   F+ ++PTL N+GT   Q  +CF+  V D L GIF  L+  A++ +  GG G  +
Sbjct: 65  AMAHLEFLPNSPTLMNAGTPSSQCMACFVLPVEDSLEGIFDTLKLAALIQQTGGGTGFSF 124

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +H T G S G + F+ + N     + QG KR+GA    L   H DV EF+ 
Sbjct: 125 SRLRPRGDVVHSTGGISSGAVSFMMLYNAMTETIKQGSKRRGANMGILRVDHPDVREFVT 184

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++    DRR  ++ N +  + D FM+ + +   + L +P + S                
Sbjct: 185 SKR----DRRALNNFNISVGVTDEFMRAIEKGEKYPLVNPRDRS---------------- 224

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+    A  +W  ++   +++G P +   D  N ++P +H+G + ++N 
Sbjct: 225 -----------VWEHEDARRIWELIIQEAWDSGEPGLVALDTINRQNPTKHLGEIEATNP 273

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L+        C LGSINL A         Q D+ KL   +   V  LDNVIDIN 
Sbjct: 274 CAEEPLHPYE----ACCLGSINLNAVVTGPPEQRQLDWHKLGELVDLGVHFLDNVIDINH 329

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +   + +     +R IGLG+MG+   L  L +PY S EA+ +A+E M F+   A+ ASV+
Sbjct: 330 YPDPRIEDICRRNRRIGLGVMGWADLLFQLGVPYDSEEALSLAEELMGFVEDRAVEASVK 389

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ RG + ++ GS +D+   P                                   MRN
Sbjct: 390 LAERRGVFPNYPGSDYDRRGGPR----------------------------------MRN 415

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDE 818
           +    IAPT TI  I   S  I+P +   Y +  + G      ++   + E ++R + D+
Sbjct: 416 ATTRTIAPTGTIGIIANCSAGIEPLFALTYTRRALGGRELKQEIHPVFLEEARRRGVLDD 475

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +    G + N+  +P+DL+++ ATA EI P W +   +  Q+ +D   S  + L 
Sbjct: 476 HLREHVVA-TGRVRNLPTLPEDLRRVFATALEISPEWHVRMQATFQRHVDNGVSKTINLP 534

Query: 879 -EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKS----TLKGVDGKLNAVPVTD 930
            E + + ++  YR A+ +G K  T Y   SR    +       T    DG     PV +
Sbjct: 535 QEATPEDVESAYRLAYELGCKGITVYRYGSRPEQVLSLEGYCLTCAREDGLPTEEPVVE 593


>gi|60202516|gb|AAX14644.1| ribonucleotide reductase large catalytic subunit mutant
           [Corynebacterium stationis]
          Length = 720

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/716 (25%), Positives = 297/716 (41%), Gaps = 69/716 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       + E+  D++ +       Y  
Sbjct: 43  REAANQYFLQHVNQNTVYFHDL-EEKIEYLVENKYYEPEVIEA-YDWEFIKSLFKRAYSF 100

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  +LG    Y  Y L     R  + + F  RV+M            A    + + S
Sbjct: 101 KFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDEIMS 159

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    + +
Sbjct: 160 GRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 220 RESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKR 279

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYE 526
              D++ R   ++    IPD+      +N    LFSP +V     +YGK F +I+  ++ 
Sbjct: 280 ENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSPYDV---ERVYGKPFGDISVSDHY 336

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+
Sbjct: 337 AEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSNLCS 395

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI   +S                  CNLGS+N+         D+     T+  A+R L  
Sbjct: 396 EILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDFPDFGGTVEAAIRGLTA 450

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     + + 
Sbjct: 451 VADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYA 510

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRL 744
           A+ AS ++A+ER   +S FK S +  GVF  +            + E+     ++  S  
Sbjct: 511 ALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAE 570

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++            
Sbjct: 571 DWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK----------- 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E  I  + Y          + +D       A+E+    +I++ +   
Sbjct: 620 -------------EGKIGRVYYPA------PHMDNDNLDYFQDAYEVGHEKIIDTYAVAT 660

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R       + ++G 
Sbjct: 661 KYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQMALA-GTEIEGC 715


>gi|309807847|ref|ZP_07701779.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809738|ref|ZP_07703592.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325913648|ref|ZP_08176010.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919792|ref|ZP_08276743.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308168949|gb|EFO71035.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169917|gb|EFO71956.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325477007|gb|EGC80157.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937139|gb|EGG33567.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 725

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/726 (26%), Positives = 315/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E Y++     +      ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKE-YDKLVANPK-IKKTYISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD+V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|325912229|ref|ZP_08174626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
 gi|325475888|gb|EGC79057.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
          Length = 725

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/748 (25%), Positives = 321/748 (42%), Gaps = 77/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +  K    + +  + E     I+     + L     + + +       Y++
Sbjct: 29  KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQ 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      +  
Sbjct: 87  HFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIH 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD ++
Sbjct: 206 REFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSPYDIMREYGKPMSDISITKEYDNL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  SNLC+E
Sbjct: 326 VANPKIKKTY--ISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   ++  E               CNLGS+N+         D +     +  ++R LD V
Sbjct: 384 IAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDRV 439

Query: 636 I-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             + N       +K N  + A+GLG M     L   HI Y SPEAV+  D      +++A
Sbjct: 440 SRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPW 746
             AS +LAQ+ GAYS FK S +  G +       D++   A ++D   +      SR  W
Sbjct: 500 FKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +              
Sbjct: 560 NNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRK------------- 606

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E M+  +      I N        K     A+E+ P  +I+  +  QK 
Sbjct: 607 -----------EGMVGRIYVPAYKIDNTNY-----KYYQKGAYEVGPAAIIDIVAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G +  L A
Sbjct: 651 VDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAA 703

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             V   +           CT   EC+VC
Sbjct: 704 DEVIKTDKFK--------CTGSKECQVC 723


>gi|309805907|ref|ZP_07699939.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|312873293|ref|ZP_07733348.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|308167683|gb|EFO69830.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|311091173|gb|EFQ49562.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
          Length = 725

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/748 (25%), Positives = 322/748 (43%), Gaps = 77/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +  K    + +  + E     I+     + L     + + +       Y++
Sbjct: 29  KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQ 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++G    Y+ Y L  N  + E  + +  RV M         E  A      +  
Sbjct: 87  HFTFPNFMGAVKFYNAYALKTNDHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIH 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  V D++  I  ++  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FLD ++
Sbjct: 206 REFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSPYDIMREYGKPMSDISITKEYDNL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  SNLC+E
Sbjct: 326 VANPKIKKTY--ISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   ++  E               CNLGS+N+         D +     +  ++R LD+V
Sbjct: 384 IAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDHV 439

Query: 636 I-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             + N       +K N  + A+GLG M     L   HI Y SPEAV+  D      +++A
Sbjct: 440 SRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPW 746
             AS +LAQ+ GAYS FK S +  G +       D++   A ++D   +      SR  W
Sbjct: 500 FKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +              
Sbjct: 560 NNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRK------------- 606

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E M+  +      I N        K     A+E+ P  +I+  +  QK 
Sbjct: 607 -----------EGMVGRIYVPAYKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D+ + + L+  Y  A+     T YY+R R      +  L+G +  L A
Sbjct: 651 VDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAA 703

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             V   +           CT   EC+VC
Sbjct: 704 DEVIKTDKFK--------CTGSKECQVC 723


>gi|259500783|ref|ZP_05743685.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|302190766|ref|ZP_07267020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners AB-1]
 gi|259167477|gb|EEW51972.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 725

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/726 (26%), Positives = 315/726 (43%), Gaps = 76/726 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E     A+    K +  ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKEYDNLVANPKIKKTY--ISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D +     +  ++R LD+V  + N       +K N  + A+
Sbjct: 406 ICCNLGSLNIAKAMD----DSEHFEHLVANSIRALDHVSRESNLKCAPSIRKGNLANHAV 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S +
Sbjct: 462 GLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESEY 521

Query: 717 DQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+AP
Sbjct: 522 ADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVAP 581

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +                         E M+  +    
Sbjct: 582 TGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVPA 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
             I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+ 
Sbjct: 618 YKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLNK 672

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y  A+     T YY+R R      +  L+G +  L A  V   +           CT  
Sbjct: 673 AYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTGS 717

Query: 948 TECEVC 953
            EC+VC
Sbjct: 718 KECQVC 723


>gi|225849392|ref|YP_002729556.1| ribonucleoside-diphosphate reductase subunit alpha (ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643585|gb|ACN98635.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 1222

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/551 (38%), Positives = 318/551 (57%), Gaps = 40/551 (7%)

Query: 369  SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             +C++  + D L  I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+
Sbjct: 643  HNCYVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGIIPFI 702

Query: 429  KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            K+ +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD 
Sbjct: 703  KIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDE 762

Query: 489  FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             M+R+ +     LF P E   L   +G+EF+  YE+   +A++GE+K+++KI +   ++K
Sbjct: 763  LMRRIKEGEPIYLFDPAECPKLVTAWGEEFKKEYESCIEKAEKGELKLWKKIDSRDFYKK 822

Query: 549  MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L  L +TGHPW+TFKD  N ++P     V++SSNLCTEI++ +S E TAVC L S+NL 
Sbjct: 823  YLFKLAKTGHPWLTFKDRHNEKNPCPQYSVINSSNLCTEISIPNSPESTAVCTLASVNLA 882

Query: 609  AHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
             H   +   FD+DKL  T+ T V  LDN++D N +  E+++K+    R IG+G+MGF  A
Sbjct: 883  RHVKEDKSDFDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMDLRPIGIGVMGFHEA 942

Query: 667  LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
            L  L IPY S +AVE A +  +F+     + S ELA+ERGA+  +  + ++         
Sbjct: 943  LIKLGIPYDSDKAVETARKIAKFMREVTYAKSEELAKERGAFPHYYEANYNYPP------ 996

Query: 727  GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                                            RN+  +A+APTA+I+ I G S SID  +
Sbjct: 997  -------------------------------RRNAVLLAVAPTASISIIAGTSSSIDNYF 1025

Query: 787  QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIH 845
             N++ +  +SG F V+N  L+ EL+++ LW E +   +K H GSI  IE +   + K ++
Sbjct: 1026 SNIFSRDTLSGKFIVINKPLMKELEEKGLWSEELAEKIKAHQGSIQYIEELDGKIDKSLY 1085

Query: 846  ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             TA+E+ P   I+ A+  Q++IDQA S +LY++E    K++ IY  AW  GLK+TYY   
Sbjct: 1086 KTAYEVSPYRQIDIAAAFQEYIDQAVSKSLYIEEDLRDKMEDIYMYAWEKGLKSTYYCFI 1145

Query: 906  RSATSVEKSTL 916
                  EK TL
Sbjct: 1146 DKTVKGEKYTL 1156



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 26/231 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK----NMYDGLSESDLETAL 202
           ++  DG++  F  K+L   +     GL+      ++ +  K     + + ++  +L+  +
Sbjct: 5   VVKRDGSVEKFQMKKLVDAIFALLEGLELPDDYEIVFKVAKELDLKIPEKVTTEELDYLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI K   Y  +  R LL+ + R +                       F  YI  
Sbjct: 65  LKAIEHLIPKNYIYDTLATRQLLKIINRRIDRRF-----------------NSFKDYINY 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
            V+ +LL   ++ FD+  L   + Y RD+  +Y GL  L DRY +       IE PQ FF
Sbjct: 108 AVEEKLLKPELLQFDIDRLEKSIDYSRDYNLDYFGLSTLKDRYLMKDRDFETIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           MRVAMG+   E E     ++ YN LS+  ++ STPTLFNSGT   Q SSCF
Sbjct: 168 MRVAMGIGNTEDE----IIKIYNKLSNLEYLHSTPTLFNSGTLTNQYSSCF 214


>gi|300769756|ref|ZP_07079638.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300492664|gb|EFK27850.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 721

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/713 (22%), Positives = 291/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  +    +   L   +   Y+ E            DF  +    D    +D
Sbjct: 33  EALAAFLEQNVEPNTMKFDSLKARF--DYLREHDYLETPAIDKYDFSFIEKLYDYLRSQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  +     + + F  RVAM         E  A++  + +   
Sbjct: 91  FHFKTFMAAYKFYAQYALKTDDGDYYL-ENFIDRVAMNALYFADGNEDLAMDLADEIVHQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELISCFLIQSTDDMNSIGRTINSALQLSRIGGGVGINLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I   +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 GAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + +  +A   LFSP  V   + +     ++  E Y+  
Sbjct: 270 NADEKIRLKTLSLGVTVPDKFYELIKADADMYLFSPYGVEREYGVPFSYVDVTKE-YDNM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E+
Sbjct: 329 VKNPNIRKTK-IKARDLENEISKLQQESGYPYVVNIDTANREN--PIDGKIVMSNLCSEV 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N++    +  F       ++   VR L  V 
Sbjct: 386 MQVQTPSLIDDQQQYEKLGTDISCNLGSTNIVNLMTSPDF-----GHSVEAMVRALTFVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +K N     IGLG MG  +      + Y S EAV+  +     +++  +
Sbjct: 441 DHSNVDVVPSIQKGNRQAHTIGLGAMGLHAFFAKNQMEYGSKEAVDFTNIYFLLLNYWTL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS E+A+E    + +F+ S +  G +         + + +       ++   ++  W+ 
Sbjct: 501 KASNEIARERHETFVNFEKSKYADGSYFDKYTTQDWQPKYDKTAALFDSIFIPTKADWEA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   + S+ P    +  +                
Sbjct: 561 LKEAVMRDGLYHQNRMAVAPNGSISYINDTTASLHPIINRVEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + +D    + +A++ D   +I+  +  Q+ +D
Sbjct: 606 ---------EKKIGKIYYPA------PYLSNDTINYYKSAYDTDMRKVIDVYAAAQQHVD 650

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 651 QGMSLTLFMRSTIPAGLYEWKDGRTDKMTTRDLNILRNYAYRKGIKSIYYIRT 703


>gi|289751723|ref|ZP_06511101.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
 gi|289692310|gb|EFD59739.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 733

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/721 (24%), Positives = 291/721 (40%), Gaps = 83/721 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWAQ 697

Query: 896 G 896
           G
Sbjct: 698 G 698


>gi|296536500|ref|ZP_06898591.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
 gi|296263179|gb|EFH09713.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
          Length = 633

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/715 (31%), Positives = 314/715 (43%), Gaps = 121/715 (16%)

Query: 277 DLVYLANDL----------KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
           D V+LA+D+             RD      G   L DRY +       E  Q  F RVA 
Sbjct: 3   DAVHLADDIQLAGHGQVRVDRSRDALLTDFGKATLDDRYLMPG-----ESYQDLFARVAS 57

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                 ++    A   Y+ +S   FM +TP L N GT      SCFL    D L GI   
Sbjct: 58  AY----SDDSAHAQRIYDYISRLWFMPATPVLSNGGTTRGLPISCFLNEANDSLNGIVDL 113

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             EN  LA   GG+G+ W  +R +G  +   NGK+ G+IPF++V +   +A++QG  R+G
Sbjct: 114 WNENVWLASKGGGIGSYWGNLRSIGEKVGQ-NGKTSGIIPFIRVMDSLTLAISQGSLRRG 172

Query: 447 AVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           +   YL   H ++EEF+DLR+ T GD  R+  +++    +PD FM+ V  +  W L SP 
Sbjct: 173 SAAVYLPVSHPEIEEFIDLRRPTGGDPNRKALNLHHGILVPDAFMRAVEADEEWALTSPK 232

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +                             V RK+SA  LW ++L    E G P+I + D
Sbjct: 233 DG---------------------------AVVRKVSARGLWIRILMARIEQGEPYIIYSD 265

Query: 566 PCN--IRSPQQHVG-VVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFD 617
             N      Q+  G  V +SNLC+EITL +       E TAVC L S+NL        F+
Sbjct: 266 AVNNARPEHQKLAGLEVKTSNLCSEITLPTGRDQHGKERTAVCCLSSLNL-----ETWFE 320

Query: 618 YDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +   A  I   +R LDNV    ID    ++ +AK S    R++GLG+MGF S L   ++P
Sbjct: 321 WKDDARFIPDVMRFLDNVLQGFIDDAPDSMARAKYSAMRERSVGLGVMGFHSFLQAQNVP 380

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S  A        + I   A  AS  LA+ERG                           
Sbjct: 381 FESVIAKVWNKRMFKHIREQADLASRLLAEERGPCP------------------------ 416

Query: 734 DELAMNRTSRLPWDELKKRVKTIGM--RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
                                  G   R SN MAIAPTA+I+ IC G S  I+P   N+Y
Sbjct: 417 ------------------DAAEYGFMERFSNKMAIAPTASISIICGGASPGIEPIAANVY 458

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
               +SG F V N +L   L +    D+   + +  + GS+ +++ + +  K +  TAFE
Sbjct: 459 NHKTLSGSFIVRNPYLKKVLAKHGRDDDETWTTITVNKGSVSHLDFLDEQEKAVFKTAFE 518

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +D  W++E A+ R  +I Q+QS+NL+L     K  L  I+ QAW  G+K+ YY RS S  
Sbjct: 519 LDQRWVVEHAADRTPYICQSQSVNLFLPADVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQ 578

Query: 910 SV----EKSTLKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 EK  ++   G   A       PV          G   + T   EC  CQ
Sbjct: 579 RADAISEKVAVQPELGFAAATSIDAVLPVPPAPRVRAVAGEGGNGTDYEECLACQ 633


>gi|283856394|ref|YP_162774.2| ribonucleoside-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|283775393|gb|AAV89663.2| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 613

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 210/683 (30%), Positives = 309/683 (45%), Gaps = 108/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLLPG-----ESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRDG------------------ 236

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 237 ---------TKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL+         +      I   +R LDNV  
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQ-----WHDNKRFIEDVMRFLDNVLQ 342

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  
Sbjct: 343 SYIDNAPDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTK 402

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              AS+ LA+ERGA         D GV                                 
Sbjct: 403 VNEASMMLAKERGACPD----AADMGVME------------------------------- 427

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ I  G S  I+P   N+Y    +SG F V N +L   L+ 
Sbjct: 428 -----RFSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQD 482

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 483 KSKDSDAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQS 542

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A      
Sbjct: 543 LNLFIPADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------GFAGGVEA------ 590

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
           +++     I     +  EC  CQ
Sbjct: 591 DNTPQMRQIEVEMRNYDECLACQ 613


>gi|259508043|ref|ZP_05750943.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
 gi|259164384|gb|EEW48938.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
          Length = 701

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 182/718 (25%), Positives = 302/718 (42%), Gaps = 74/718 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L+ E     +E     + + +   DF+ +       Y  
Sbjct: 25  REAANQYFLQHVNQNTVFFHNLH-EKLDYLVENNYYEKEVLDK-YDFEYIKDLFKRAYSY 82

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  +LG    Y  Y L     R  +E  +     VA+ LA  + E    A    + +
Sbjct: 83  KFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDRE---TANALVDEI 139

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  NSG  +  +  SCFL  + D++  I  A+     L+K  GG+    +
Sbjct: 140 MTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 200 NLREAGAPIKKIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYEN 524
           ++   D++ R   ++    IPD+  +   +N    LFSP +V  +   YGK F +I+   
Sbjct: 260 KRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERI---YGKPFADISVTE 316

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +    +     KI+A   ++ +  + FE+G+P+I F+D  N  +     G V  SNL
Sbjct: 317 LYNEMVDDDRIRKTKINARQFFQTLAEIQFESGYPYIMFEDTVNEAN--PIEGRVTHSNL 374

Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI   S+              E   CNLGS+N+         D    + TI TA+R L
Sbjct: 375 CSEILQVSTPSTYHEDLSYDEVGEDISCNLGSLNIAM-----AMDSPDFSRTIETAIRGL 429

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V +     ++   +K N    AIGLG M     L   HI Y S E ++  +     + 
Sbjct: 430 TAVSEQTSIDSVPSIRKGNEAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVL 489

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTS 742
           +  + AS ++A+ER   +++F+ S +  GV+     P +      +V++  A   ++  +
Sbjct: 490 YECLRASNKIARERGQRFANFENSDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPT 549

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +LK  V   G+ N    A+ PT +I+ I   + SI P    + ++          
Sbjct: 550 AEEWAQLKADVMEHGLFNRYLQAVPPTGSISYINNSTSSIHPIASKIEIRK--------- 600

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                          E  I  + Y          + +D  +    A+EI    +I++ + 
Sbjct: 601 ---------------EGKIGRVYYPA------PHMDNDNLEYFQDAYEIGYEKIIDTYAV 639

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +E + + G 
Sbjct: 640 ATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQVA-LEGTEIDGC 696


>gi|103487258|ref|YP_616819.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingopyxis
           alaskensis RB2256]
 gi|98977335|gb|ABF53486.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 676

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/683 (31%), Positives = 312/683 (45%), Gaps = 108/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 88  DASRDALLTDFGKETLQDRYLLPG-----ESYQDLFARVADAYA----DDQDHAQRLYDY 138

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W 
Sbjct: 139 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVGTWNENVWLASRGGGIGTYWG 198

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 199 AVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 257

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    I D FM+ V     + L SP + S                 
Sbjct: 258 RKPSGDFNRKALNLHHGVLITDEFMEAVRDGTEFNLRSPKDNS----------------- 300

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 301 ----------VRGTVDARSLFQKLVETRLATGEPYIIFIDQVNRMMPKHHRDLGLKVTTS 350

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL         +++     I   +R+LDNV  
Sbjct: 351 NLCSEITLPTGRDHLGNDRTAVCCLSSLNL-----ETWDEWNGDKRFIEDVMRMLDNVLQ 405

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++GLG+MGF S L    +P+    A        + I   
Sbjct: 406 DYIDRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSSNLRIFKHIRAQ 465

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              AS+ LA+ERG          DQGV                                 
Sbjct: 466 VDQASMLLAKERGPCPD----AADQGVME------------------------------- 490

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F++ N  L   L  
Sbjct: 491 -----RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIRNPHLEALLVD 545

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    +A+ + +    GS+ +++ +  D K +  T+FEID  WL+E A+ R  +IDQA S
Sbjct: 546 KAKNSDAVWNSILERGGSVQHLDFLTQDEKDVFKTSFEIDQRWLLELAADRTPYIDQAAS 605

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S          G  G + A      
Sbjct: 606 LNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA------GFAGGVEA------ 653

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
           +++  +     + T   EC  CQ
Sbjct: 654 DNTPEAAKFELATTDYDECLACQ 676


>gi|289446117|ref|ZP_06435861.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
 gi|289419075|gb|EFD16276.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 736

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 188/801 (23%), Positives = 313/801 (39%), Gaps = 132/801 (16%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R   + +     ++   K+   DGTL+ F+  R+E  V  A                   
Sbjct: 34  RRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRA------------------- 74

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                            +R +   +P+     A+ + + L R +               +
Sbjct: 75  -----------------AREVACDDPDMPGTVAKAVADALGRGIA-------------PV 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRY 305
           + +      R  E G+        +       L  A  L   RD        + +L +RY
Sbjct: 105 EDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERY 164

Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLF 359
            LH   G   E       R A  +A  E + E     + A  F  LL +  F+ ++PTL 
Sbjct: 165 LLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLM 224

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G
Sbjct: 225 NSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGG 284

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       
Sbjct: 285 TASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHF 341

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D F++ V +N    L +P                               +  +
Sbjct: 342 NLSVGVTDAFLRAVERNGLHRLVNPRTGK---------------------------IVAR 374

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  L+  +       G P + F D  N  +P    G + ++N C E+ L         
Sbjct: 375 MPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES---- 430

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG
Sbjct: 431 CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLG 490

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + + 
Sbjct: 491 VMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARS 550

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                  RN+   ++APT TI+ I G +
Sbjct: 551 G------------------------------------PRRNAQVTSVAPTGTISLIAGTT 574

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P 
Sbjct: 575 AGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPA 633

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   +K
Sbjct: 634 EVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVK 693

Query: 899 --TTYYLRSRSATSVEKSTLK 917
             T Y   SR    +  +  K
Sbjct: 694 GITVYRYGSREGQVLSYAAPK 714



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V          V   + +   +             I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREVACDDPDMPGTVAKAVADALGR------------GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQ 132
           G   + R Y++YR+ R+++R A+
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAK 141


>gi|253797502|ref|YP_003030503.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289552822|ref|ZP_06442032.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|253319005|gb|ACT23608.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437454|gb|EFD19947.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|328457287|gb|AEB02710.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 4207]
          Length = 706

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 188/801 (23%), Positives = 313/801 (39%), Gaps = 132/801 (16%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R   + +     ++   K+   DGTL+ F+  R+E  V  A                   
Sbjct: 5   RRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRA------------------- 45

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                            +R +   +P+     A+ + + L R +               +
Sbjct: 46  -----------------AREVACDDPDMPGTVAKAVADALGRGIA-------------PV 75

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRY 305
           + +      R  E G+        +       L  A  L   RD        + +L +RY
Sbjct: 76  EDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERY 135

Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLF 359
            LH   G   E       R A  +A  E + E     + A  F  LL +  F+ ++PTL 
Sbjct: 136 LLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLM 195

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G
Sbjct: 196 NSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGG 255

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       
Sbjct: 256 TASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHF 312

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D F++ V +N    L +P                               +  +
Sbjct: 313 NLSVGVTDAFLRAVERNGLHRLVNPRTGK---------------------------IVAR 345

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  L+  +       G P + F D  N  +P    G + ++N C E+ L         
Sbjct: 346 MPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES---- 401

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG
Sbjct: 402 CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLG 461

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + + 
Sbjct: 462 VMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARS 521

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                  RN+   ++APT TI+ I G +
Sbjct: 522 G------------------------------------PRRNAQVTSVAPTGTISLIAGTT 545

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P 
Sbjct: 546 AGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPA 604

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   +K
Sbjct: 605 EVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVK 664

Query: 899 --TTYYLRSRSATSVEKSTLK 917
             T Y   SR    +  +  K
Sbjct: 665 GITVYRYGSREGQVLSYAAPK 685



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 22  KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 70

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 71  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 112


>gi|59859089|gb|AAX09329.1| NrdE [Corynebacterium stationis]
          Length = 720

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/716 (25%), Positives = 296/716 (41%), Gaps = 69/716 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       + E+  D++ +       Y  
Sbjct: 43  REAANQYFLQHVNQNTVYFHDL-EEKIEYLVENKYYEPEVIEA-YDWEFIKSLFKRAYSF 100

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  +LG    Y  Y L     R  + + F  RV+M            A    + + S
Sbjct: 101 KFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDEIMS 159

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    + +
Sbjct: 160 GRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 220 RESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKR 279

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYE 526
              D++ R   ++    IPD+      +N    LFSP +V     +YGK F +I+  ++ 
Sbjct: 280 ENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSPYDV---ERVYGKPFGDISVSDHY 336

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+
Sbjct: 337 AEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSNLCS 395

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI   +S                  CNLGS+N+         D      T+  A+R L  
Sbjct: 396 EILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRGLTA 450

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     + + 
Sbjct: 451 VADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYA 510

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRL 744
           A+ AS ++A+ER   +S FK S +  GVF  +            + E+     ++  S  
Sbjct: 511 ALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAE 570

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++            
Sbjct: 571 DWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK----------- 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E  I  + Y          + +D       A+E+    +I++ +   
Sbjct: 620 -------------EGKIGRVYYPA------PHMDNDNLDYFQDAYEVGHEKIIDTYAVAT 660

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R       + ++G 
Sbjct: 661 KYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTLYYIRLRQMALA-GTEIEGC 715


>gi|15839968|ref|NP_335005.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|13880109|gb|AAK44819.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
          Length = 735

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 188/801 (23%), Positives = 313/801 (39%), Gaps = 132/801 (16%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R   + +     ++   K+   DGTL+ F+  R+E  V  A                   
Sbjct: 34  RRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRA------------------- 74

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                            +R +   +P+     A+ + + L R +               +
Sbjct: 75  -----------------AREVACDDPDMPGTVAKAVADALGRGIA-------------PV 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRY 305
           + +      R  E G+        +       L  A  L   RD        + +L +RY
Sbjct: 105 EDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERY 164

Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLF 359
            LH   G   E       R A  +A  E + E     + A  F  LL +  F+ ++PTL 
Sbjct: 165 LLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLM 224

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G
Sbjct: 225 NSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGG 284

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       
Sbjct: 285 TASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHF 341

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D F++ V +N    L +P                               +  +
Sbjct: 342 NLSVGVTDAFLRAVERNGLHRLVNPRTGK---------------------------IVAR 374

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  L+  +       G P + F D  N  +P    G + ++N C E+ L         
Sbjct: 375 MPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES---- 430

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG
Sbjct: 431 CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLG 490

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + + 
Sbjct: 491 VMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARS 550

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                  RN+   ++APT TI+ I G +
Sbjct: 551 G------------------------------------PRRNAQVTSVAPTGTISLIAGTT 574

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P +   + ++ +      VN       + R  + + +I+++    G +    R+P 
Sbjct: 575 AGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPA 633

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   +K
Sbjct: 634 EVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVK 693

Query: 899 --TTYYLRSRSATSVEKSTLK 917
             T Y   SR    +  +  K
Sbjct: 694 GITVYRYGSREGQVLSSAAPK 714



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V          V   + +   +             I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREVACDDPDMPGTVAKAVADALGR------------GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQ 132
           G   + R Y++YR+ R+++R A+
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAK 141


>gi|260185444|ref|ZP_05762918.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 693

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/784 (23%), Positives = 308/784 (39%), Gaps = 132/784 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DGTL+ F+  R+E  V  A                                    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA------------------------------------ 31

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     A+ + + L R +               ++ +      R  E G+ 
Sbjct: 32  AREVACDDPDMPGTVAKAVADALGRGIA-------------PVEDIQDCVEARLGEAGLD 78

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                  +       L  A  L   RD        + +L +RY LH   G   E      
Sbjct: 79  DVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELM 138

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E + E     + A  F  LL +  F+ ++PTL NSGT    L+ CF+  +
Sbjct: 139 DRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPI 198

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A 
Sbjct: 199 EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAG 258

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +N
Sbjct: 259 VVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERN 315

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                               +  ++ A  L+  +       
Sbjct: 316 GLHRLVNPRTGK---------------------------IVARMPAAELFDAICKAAHAG 348

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ + 
Sbjct: 349 GDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRV 404

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY S
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDS 464

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                  
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSG---------------- 508

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                                 RN+   ++APT TI+ I G +  I+P +   + ++ + 
Sbjct: 509 --------------------PRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVG 548

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                VN       + R  + + +I+++    G +    R+P +++    TA EI P W 
Sbjct: 549 RHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPAEVRAAFPTAAEIAPQWH 607

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEK 913
           +   +  Q+ ++ A S  + L    +   +  IY  AW   +K  T Y   SR    +  
Sbjct: 608 LRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLSY 667

Query: 914 STLK 917
           +  K
Sbjct: 668 AAPK 671



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 98


>gi|15607710|ref|NP_215084.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis H37Rv]
 gi|148660339|ref|YP_001281862.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148821771|ref|YP_001286525.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|167968357|ref|ZP_02550634.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis H37Ra]
 gi|215402336|ref|ZP_03414517.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|215429402|ref|ZP_03427321.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|215444680|ref|ZP_03431432.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|218752208|ref|ZP_03531004.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|254230912|ref|ZP_04924239.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|254363528|ref|ZP_04979574.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549524|ref|ZP_05139971.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260199573|ref|ZP_05767064.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|260203727|ref|ZP_05771218.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289441955|ref|ZP_06431699.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289573162|ref|ZP_06453389.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289744283|ref|ZP_06503661.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289752609|ref|ZP_06511987.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289756647|ref|ZP_06516025.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|289760689|ref|ZP_06520067.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|294996080|ref|ZP_06801771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis 210]
 gi|297633060|ref|ZP_06950840.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730037|ref|ZP_06959155.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN R506]
 gi|306774674|ref|ZP_07413011.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|306779425|ref|ZP_07417762.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|306783211|ref|ZP_07421533.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|306787581|ref|ZP_07425903.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|306792131|ref|ZP_07430433.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|306796318|ref|ZP_07434620.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|306802177|ref|ZP_07438845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|306806386|ref|ZP_07443054.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|306966585|ref|ZP_07479246.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|306970778|ref|ZP_07483439.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|307078502|ref|ZP_07487672.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|307083064|ref|ZP_07492177.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|313657365|ref|ZP_07814245.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN V2475]
 gi|81669533|sp|O53767|NRDZ_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase nrdZ
 gi|2909629|emb|CAA17441.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|124599971|gb|EAY58981.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|134149042|gb|EBA41087.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504491|gb|ABQ72300.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148720298|gb|ABR04923.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|289414874|gb|EFD12114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289537593|gb|EFD42171.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289684811|gb|EFD52299.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289693196|gb|EFD60625.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289708195|gb|EFD72211.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|289712211|gb|EFD76223.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|308216780|gb|EFO76179.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|308327639|gb|EFP16490.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|308331994|gb|EFP20845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|308335781|gb|EFP24632.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|308339387|gb|EFP28238.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|308343263|gb|EFP32114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|308347155|gb|EFP36006.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|308351070|gb|EFP39921.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|308355729|gb|EFP44580.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|308359684|gb|EFP48535.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|308363589|gb|EFP52440.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|308367225|gb|EFP56076.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|323721044|gb|EGB30108.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902399|gb|EGE49332.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis W-148]
          Length = 692

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/784 (23%), Positives = 308/784 (39%), Gaps = 132/784 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DGTL+ F+  R+E  V  A                                    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA------------------------------------ 31

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     A+ + + L R +               ++ +      R  E G+ 
Sbjct: 32  AREVACDDPDMPGTVAKAVADALGRGIA-------------PVEDIQDCVEARLGEAGLD 78

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                  +       L  A  L   RD        + +L +RY LH   G   E      
Sbjct: 79  DVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELM 138

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E + E     + A  F  LL +  F+ ++PTL NSGT    L+ CF+  +
Sbjct: 139 DRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPI 198

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A 
Sbjct: 199 EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAG 258

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +N
Sbjct: 259 VVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERN 315

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                               +  ++ A  L+  +       
Sbjct: 316 GLHRLVNPRTGK---------------------------IVARMPAAELFDAICKAAHAG 348

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ + 
Sbjct: 349 GDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRV 404

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY S
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDS 464

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                  
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSG---------------- 508

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                                 RN+   ++APT TI+ I G +  I+P +   + ++ + 
Sbjct: 509 --------------------PRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVG 548

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                VN       + R  + + +I+++    G +    R+P +++    TA EI P W 
Sbjct: 549 RHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPAEVRAAFPTAAEIAPQWH 607

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEK 913
           +   +  Q+ ++ A S  + L    +   +  IY  AW   +K  T Y   SR    +  
Sbjct: 608 LRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLSY 667

Query: 914 STLK 917
           +  K
Sbjct: 668 AAPK 671



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 98


>gi|215410107|ref|ZP_03418915.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298524058|ref|ZP_07011467.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493852|gb|EFI29146.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
          Length = 692

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 186/784 (23%), Positives = 308/784 (39%), Gaps = 132/784 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DGTL+ F+  R+E  V  A                                    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA------------------------------------ 31

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     A+ + + L R +               ++ +      R  E G+ 
Sbjct: 32  AREVACDDPDMPGTVAKAVADALGRGIA-------------PVEDIQDCVEARLGEAGLD 78

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                  +       L  A  L   RD        + +L +RY LH   G   E      
Sbjct: 79  DVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELM 138

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E + E     + A  F  LL +  F+ ++PTL NSGT    L+ CF+  +
Sbjct: 139 DRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPI 198

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A 
Sbjct: 199 EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAG 258

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +N
Sbjct: 259 VVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERN 315

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                               +  ++ A  L+  +       
Sbjct: 316 GLHRLVNPRTGK---------------------------IVARMPAAELFDAICKAAHAG 348

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ + 
Sbjct: 349 GDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRV 404

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+L      AVR LD+VID++ +   +  ++    R +GLG+MG    L  L IPY S
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKVGLGVMGLAELLAALGIPYDS 464

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                  
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSG---------------- 508

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                                 RN+   ++APT TI+ I G +  I+P +   + ++ + 
Sbjct: 509 --------------------PRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVG 548

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                VN       + R  + + +I+++    G +    R+P +++    TA EI P W 
Sbjct: 549 RHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPAEVRAAFPTAAEIAPQWH 607

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEK 913
           +   +  Q+ ++ A S  + L    +   +  IY  AW   +K  T Y   SR    +  
Sbjct: 608 LRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLSY 667

Query: 914 STLK 917
           +  K
Sbjct: 668 AAPK 671



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 98


>gi|86148041|ref|ZP_01066343.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85834174|gb|EAQ52330.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 693

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 184/715 (25%), Positives = 307/715 (42%), Gaps = 68/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++     + +           L  E     + EG     + E   D   ++      Y+ 
Sbjct: 17  KQAARQFFLQHVNQNTVFFHNL-DEKIDYLLREGYYEAQVIE-QYDRSFLHQIWANAYQA 74

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  +LG    +  Y L     +  + + F  RV M   L      + A+     +  
Sbjct: 75  KFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALLLARGDCEFALALMEEIIH 133

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  GG+    T +
Sbjct: 134 QRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNL 193

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++
Sbjct: 194 REQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKR 253

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+ ++   QN    LFSP +V  ++ +   E  +  E Y  
Sbjct: 254 ENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHE 312

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             D   I+  + +SA  L++ +  + FE+G+P+I F+D  N  +     G V+ SNLC+E
Sbjct: 313 MVDDPRIRKGK-MSARGLFQTLAEIQFESGYPYIMFEDTVNQAN--PIQGRVNMSNLCSE 369

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               S       CNLGSIN+         D  +L+ T+ TA+R L+ V
Sbjct: 370 ILQVNEASNYDDDLNYSHIGRDISCNLGSINIA-----KALDGGRLSQTVDTAIRALNAV 424

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            +++  +++   +K N    AIGLG M     L    I Y SPEA++        + +H 
Sbjct: 425 SEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHC 484

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-------- 745
           ++AS +LAQE+   +  F+ S +  G F    +      + ++  +  SRL         
Sbjct: 485 LAASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSE 544

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK+ V + G+ N    AI PT +I+ I   + SI P    + ++             
Sbjct: 545 WSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRK------------ 592

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + +    + N         +    AF I P  +I+  +   +
Sbjct: 593 ------------EGKIGRVYFPAPYLNNSNL------EYFRDAFSIGPKAIIDVYAAATE 634

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  DE + + ++     AW   +KT YY+R R    +E + ++G 
Sbjct: 635 HVDQGLSLTLFFDDEVTTRDINKAQIYAWTKKIKTLYYIRMRQKA-LEGTQVEGC 688


>gi|227548645|ref|ZP_03978694.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079259|gb|EEI17222.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 721

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 178/715 (24%), Positives = 303/715 (42%), Gaps = 67/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     ++       + ++  D+  V       Y  
Sbjct: 44  REAANQYFIQHVNQNTVFFHDL-EEKIDYLVKNNYYEPEVIDA-YDWQFVKDTFKRAYSY 101

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ +LG    Y  Y L     R  + + F  RV+M      +  E+ A    + + +
Sbjct: 102 KFRFQSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLASGNEETASALVDEIMT 160

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    + +
Sbjct: 161 GRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNI 220

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++
Sbjct: 221 REAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKR 280

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +N    LFSP +V  ++ L   +  +  E YE 
Sbjct: 281 ENADEKIRIKTLSLGVVIPDVTFELAKRNDDMYLFSPYDVERVYGLPFADISVT-EKYEE 339

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +   I+  + I+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+E
Sbjct: 340 MVEDPRIRKTK-INARHFFQTIAEIQFESGYPYIMFEDTANRANPVK-TGRINMSNLCSE 397

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +S                  CNLGS+N+         D D  + T+ TA+R L  V
Sbjct: 398 ILQVNSPSVLNEDLSYAEVGHDISCNLGSLNIA-----KTMDSDNFSRTVETAIRGLTAV 452

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D     ++   +  N+   AIGLG M     L   HI Y S E ++  +     + + A
Sbjct: 453 ADKTSIESVPPVRDGNNASHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVMYEA 512

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLP 745
           I AS  +A E+   ++ F  S +  G F     P D      +V++  A   +   +   
Sbjct: 513 IKASHAIAVEKGERFADFDKSEYATGEFFDRYDPADFQPKTDKVKELFARSSVAVPTAQQ 572

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +LK  V   G+ N    A+ PT +I+ I   + SI P    + ++             
Sbjct: 573 WAQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIASKIEIRK------------ 620

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y          + ++       A+EI    +I++ +   K
Sbjct: 621 ------------EGKIGRVYYPA------PHMDNENLSYFKDAYEIGYEKIIDTYAVATK 662

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++DQ  SL L+  D  + + ++     AW  G+K+ YY+R R    +E + ++G 
Sbjct: 663 YVDQGLSLTLFFKDTITTRDINRAQIYAWRKGIKSLYYIRLRQMA-LEGTEVEGC 716


>gi|215428499|ref|ZP_03426418.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 701

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/671 (25%), Positives = 278/671 (41%), Gaps = 70/671 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQAWLMG 896
           +     AW  G
Sbjct: 656 NKAQIYAWAQG 666


>gi|58040421|ref|YP_192385.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconobacter
           oxydans 621H]
 gi|58002835|gb|AAW61729.1| Ribonucleoside-diphosphate reductase alpha chain [Gluconobacter
           oxydans 621H]
          Length = 658

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/682 (31%), Positives = 304/682 (44%), Gaps = 94/682 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L +RY L       E  QA F RVA             A   Y+ 
Sbjct: 58  DRSRDSLLTDFGKATLNNRYLLPG-----EDYQALFARVASYYGA----DAGHAQRIYDY 108

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W 
Sbjct: 109 ISRHWFMPATPVLSNGGTERGLPISCFLNEAEDSLSGIVGLWNENVWLASKGGGIGSYWG 168

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G +I   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH +VEEF+++
Sbjct: 169 NLRSIGENIGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEVEEFVEM 227

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  R+  +++    + D FM+ V  +  W L SP +                  
Sbjct: 228 RRPTGGDPNRKALNLHHGVLVTDAFMRAVENDEEWALLSPKD------------------ 269

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHS 581
                        RK+SA  LW ++LT   E G P+I + D  N   P+ H   G  V +
Sbjct: 270 ---------HSTIRKVSARGLWIRILTARMEQGEPYIIYSDHVNRARPEHHKLAGLEVKT 320

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC EITL +  +      TAVC L S+NL   +   + D   +   +     VL + I
Sbjct: 321 SNLCAEITLPTGIDHHGKNRTAVCCLSSLNLET-WDEWKDDPQFIEDVMLFLDNVLQDFI 379

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK +    R++GLG+MGF S L    IP+ S  A     +  E I   A +
Sbjct: 380 DRAPDDMARAKYAAARERSVGLGVMGFHSFLQARMIPFESVMAKVWNRKIFEHIRKQADA 439

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+ RG                                                  
Sbjct: 440 ASKHLAEVRGPCP------------------------------------------DAAEY 457

Query: 757 GM--RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G   R S+ +AIAPTA+I+ I G  S  I+P   N++++  +SG F+V N  L   L++R
Sbjct: 458 GFMERFSHKLAIAPTASISIITGNASPGIEPISANVFLQKTLSGSFSVRNRHLKKILEER 517

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               + + S +  + GS+ N++ +  D K +  TAFE+D  W++E A+ R  +I QAQS+
Sbjct: 518 GYDTDEVWSAITLNKGSVQNLDFLTQDEKDVFKTAFELDQRWVVEHAADRAPFICQAQSV 577

Query: 874 NLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L     K  L  I+ QAW  GLK+ YY RS S    +  +   V   +      +  
Sbjct: 578 NLFLPADVHKRDLHQIHFQAWKKGLKSLYYCRSLSVQRADAVSNLAVKSDILEDEKYEAT 637

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +     G  SS     EC  CQ
Sbjct: 638 AQAAPRGEMSS-GDYEECLSCQ 658


>gi|317154786|ref|YP_004122834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945037|gb|ADU64088.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 748

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 178/648 (27%), Positives = 300/648 (46%), Gaps = 86/648 (13%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVEFYNL 345
                 +L  RY      G   E  +  F RVA  +A +E + +         A +FY+L
Sbjct: 16  NENAKIVLARRYQKKDAEGIVYETVKELFWRVASAIAAEEAKYDGSSCKPATLARDFYDL 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S+ F+ ++PTL N+GT   QL++CF+  V D +  IF A++  AM+ K  GG G  ++
Sbjct: 76  MTSYSFLPNSPTLMNAGTGLGQLAACFVLPVADSIEDIFDAVKHAAMIHKSGGGTGFSFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  
Sbjct: 136 RLRAKDSVVGSTGGVASGPLSFLRIFNCATEQIKQGGTRRGANMGILRVDHPDIMEFIKA 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G+     ++ N +  + + FM+ V +N  + L +P+                    
Sbjct: 196 KERDGE----LNNFNLSIGLTEAFMRAVEKNEEFDLMAPNSG------------------ 233

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V  K++A  ++  ++   +E+G P I F D  N  +P   +G + S+N C
Sbjct: 234 ---------QVVEKLNAREVFNLLVQKAWESGDPGIVFLDRINRDNPTPALGEIESTNPC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDNVIDIN 639
            E  L         CNLGSINL   +A        + ++D+L   I  +VR LDNVID +
Sbjct: 285 GEQPLLPYE----ACNLGSINLGKCYAKGKNGHDSEVNWDELRRIIHLSVRFLDNVIDAS 340

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +  +    +R IGLG+MG+   L  L I Y S  AV++A+  M+F+   A SAS 
Sbjct: 341 VYPLSEITEMVGKNRKIGLGVMGWADLLFQLDIAYNSQTAVDLAERVMKFMRDEARSASK 400

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA ERG + ++  S++ +                                        R
Sbjct: 401 QLAAERGPFPAYAESVFGKANL----------------------------------GPYR 426

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDE 818
           N+    IAPT T++ I G S  ++P +   +V++ M  D  V  N F    LKQ D +  
Sbjct: 427 NATTTTIAPTGTLSIIGGCSSGVEPLFALSFVRNVMDNDKLVESNPFFETALKQADAYSP 486

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            ++ ++    G+I  +E +P DL++++ TA +I+P+W ++  +  QK+ D A S  + L 
Sbjct: 487 KLMEEI-AKVGTIRKMEHLPHDLRRVYVTAMDIEPIWHLKMQAAFQKYTDNAVSKTVNLP 545

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
              + + +  IY +A+  G K     R  S TS    T  G     +A
Sbjct: 546 GSATREDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKMDDA 593


>gi|312872655|ref|ZP_07732720.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311091697|gb|EFQ50076.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 725

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/727 (26%), Positives = 315/727 (43%), Gaps = 78/727 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN 310
           + E     I+     + L     + + +       Y++ F F  ++G    Y+ Y L  N
Sbjct: 50  FRERLNFLIDNDYYDKDLLAK-YNIEFIEKLTKKAYDQHFTFPNFMGAVKFYNAYALKTN 108

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             + E  + +  RV M         E  A      +    F  +TPT  N+G  R  +  
Sbjct: 109 DHK-EYLENYEDRVVMNALFLADGDEDFATSLLMDIIHNRFQPATPTFLNAGKKRRGEYI 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  ++  +  L+K  GG+    T +R  GA I     +S G+IP +K
Sbjct: 168 SCYLLRVEDNMESISRSITTSLQLSKRGGGVALCLTNLREFGAPIKKIENQSSGIIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H ++ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 LLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFLDTKRENADEKIRIKSLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   +     +  I  E Y++     +      ISA  L++ +
Sbjct: 288 FQLAKENKDMALFSPYDIMREYGKPMSDISITKE-YDKLVANPK-IKKTYISARKLFQTI 345

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   ++  E             
Sbjct: 346 AELQFESGYPYIMFEDTVNDRNPNKKEGRIVMSNLCSEIAQVNTPSEYNEDLSFSKTGHD 405

Query: 598 AVCNLGSINLLAHFANNQFDY-DKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655
             CNLGS+N+         DY +     +  ++R LD V  + N       +K N  + A
Sbjct: 406 ICCNLGSLNIA-----KAMDYSEHFEHLVANSIRALDRVSRESNLKCAPSIRKGNLANHA 460

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG M     L   HI Y SPEAV+  D      +++A  AS +LAQ+ GAYS FK S 
Sbjct: 461 VGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYATAYYAFKASNKLAQKFGAYSGFKESE 520

Query: 716 WDQGVFPI-----DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       D++   A ++D   +      SR  W+ L   +K  G+ NS+ +A+A
Sbjct: 521 YADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIPSREDWNNLVNNIKKYGLANSHLLAVA 580

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    +  +                         E M+  +   
Sbjct: 581 PTGSISYLSSCTPSLQPVVAPVETRK------------------------EGMVGRIYVP 616

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
              I N        K     A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+
Sbjct: 617 AYKIDNNNY-----KYYQKGAYEVGPAAIIDIVAAAQKHVDQAISLTLFMTDKATTRDLN 671

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             Y  A+     T YY+R R      +  L+G +  L A  V   +           CT 
Sbjct: 672 KAYIYAFKKKCATIYYVRVR------QEVLEGSEN-LAADEVIKTDKFK--------CTG 716

Query: 947 DTECEVC 953
             EC+VC
Sbjct: 717 SKECQVC 723


>gi|296282220|ref|ZP_06860218.1| ribonucleotide-diphosphate reductase subunit alpha [Citromicrobium
           bathyomarinum JL354]
          Length = 690

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 210/683 (30%), Positives = 310/683 (45%), Gaps = 103/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 97  DSARDANLTEFGKETLEDRYLLPG-----ESYQDLFARVADAYA----DDQAHAQRLYDY 147

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 148 ISNLWFMPATPVLSNGGTNRGLPISCYLNSVEDSLNGIVDTWNENVWLASKGGGIGTYWG 207

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 208 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM++V     + L SP + S                 
Sbjct: 267 RKPSGDFNRKALNLHHGVLVTDEFMEKVRAGEEFDLVSPRDGS----------------- 309

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V + + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 310 ----------VRKTVDARSLFQKLVETRLATGEPYIVFSDTVNSMMPKHHRDLGLKVSTS 359

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL         +++     I   +R LDNV  
Sbjct: 360 NLCSEITLPTGRDHLGNDRTAVCCLSSLNL-----EKWDEWNSDKQFIEDVMRFLDNVLQ 414

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++G+G+MGF S L   ++P   P A     +  + IS  
Sbjct: 415 DYIDRAPPEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNIKMFQHISTA 474

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS+ LA ERG     +      G                                  
Sbjct: 475 ANEASMMLAHERGPCPDAEEM----GAME------------------------------- 499

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L +
Sbjct: 500 -----RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLQELLAK 554

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +      + + +    GS+ +++ +  + K I+ T+FEID  WL+E A+ R   IDQAQS
Sbjct: 555 KSKDSTNVWNSILERGGSVAHLDFLTPEEKAIYKTSFEIDQRWLLEFAADRSPMIDQAQS 614

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++  AW   +K+ YYLRS+S          G  G + A   ++ 
Sbjct: 615 LNLFIPADVDKWDLMMLHFHAWEKKIKSLYYLRSKSIQRA------GFAGGVEADNTSEA 668

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                + G     T   EC  CQ
Sbjct: 669 AKYELAAGTGEQ-TDYEECLACQ 690


>gi|296116312|ref|ZP_06834928.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977131|gb|EFG83893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 620

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 218/682 (31%), Positives = 307/682 (45%), Gaps = 94/682 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L +RY L   G      Q  F RVA      E      A   Y+ 
Sbjct: 20  DRSRDALLTAFGKATLDNRYLLPGEG-----YQDLFGRVASYYGADEG----HAQRLYDY 70

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 71  ISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWG 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++L
Sbjct: 131 NLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIEL 189

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  R+  +++    I D FM+ V  +  W L SP + S                
Sbjct: 190 RRPTGGDPNRKALNLHHGILISDAFMRAVAADEEWALLSPKDGSH--------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHS 581
                        RK+SA +LW ++LT   E G P+I + D  N   PQ H   G  V +
Sbjct: 235 ------------IRKVSARSLWIRILTARMEQGEPYIIYSDHVNNARPQHHKLAGLEVKT 282

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC EITL +  +      TAVC L S+NL   +   + D   +   +    RVL + I
Sbjct: 283 SNLCAEITLPTGMDHHGKERTAVCCLSSLNLET-WDEWKDDPQFIEDVMLFLDRVLQDFI 341

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +E+AK +    R++GLG+MGF S L   +IP+ S  A        E I   A +
Sbjct: 342 DRAPDDMERAKYAAARERSVGLGVMGFHSFLQAKNIPFESVIAKVWNKRIFEHIRKQADA 401

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LAQ  GA                                                 
Sbjct: 402 ASHKLAQSLGACP------------------------------------------DAAEY 419

Query: 757 GM--RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+  R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L Q+
Sbjct: 420 GVMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTQK 479

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               + + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I QAQS+
Sbjct: 480 GRNTDDVWSSITLNKGSVQHLDFLDQQEKDVFKTAFELDQRWVIEHAADRAPFICQAQSI 539

Query: 874 NLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L     K  L  I+  AW  G+K+ YY RS S    +  +   V   +     TD  
Sbjct: 540 NLFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSVQRADAVSDGKVKNDI-MQKETDEA 598

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                   P+S T   EC  CQ
Sbjct: 599 LPPIPPAAPASSTDYEECLACQ 620


>gi|289432508|ref|YP_003462381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288946228|gb|ADC73925.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 599

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/641 (26%), Positives = 288/641 (44%), Gaps = 85/641 (13%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYN 344
                  ++L  RY    + G  IE P+  F RVA  +A  E +        +   EFY 
Sbjct: 15  RLSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  +
Sbjct: 75  AMSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+ 
Sbjct: 135 SDLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFIS 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D     + N +  +   FM +V     + + +P                    
Sbjct: 195 CKG----DPNALTNFNISVVVTRDFMTKVRSGEDYDIINPHTGE---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + 
Sbjct: 235 -----------VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSG 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N 
Sbjct: 284 CGEQTLLPYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNK 339

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +
Sbjct: 340 FPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSK 399

Query: 701 LAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           LA+ RG++ +++GS++D  G  P                                   MR
Sbjct: 400 LAEIRGSFPAYEGSMYDVPGGRP-----------------------------------MR 424

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDE 818
           N+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++      
Sbjct: 425 NATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSR 484

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            +   L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  + + 
Sbjct: 485 ELFEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFP 543

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            E + + +  ++  A+  GLK     R  S  +    T + 
Sbjct: 544 HEATREDMANVFNMAYDQGLKGVTVYRDGSRAAQPLCTSES 584


>gi|148262268|ref|YP_001228974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
 gi|146395768|gb|ABQ24401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 565

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 272/620 (43%), Gaps = 76/620 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRA----VEFYNL 345
                  L++L  RY L    G  IE P+  F R+A  +A  E     RA      FY L
Sbjct: 1   MELSENALKVLRARYLLKDEQGRVIESPREMFGRIARSVAEAEKFYGDRACYWEERFYEL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSS  F+ ++PT+ N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++
Sbjct: 61  LSSLRFLPNSPTIMNAGKSPGQLAACFVLPVEDSMPGIFDTLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H DV EF+ +
Sbjct: 121 RLRPKADIVRSTGGIASGPVSFMKIYNTATDVIKQGGARRGANMGILRIDHPDVLEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++    D +   + N +  I D +M+ +  +  + L +P                     
Sbjct: 181 KR----DAKELANFNISLAITDAYMEALRADGEYQLVNPRTGKSAG-------------- 222

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                        ++ A  ++ +++   +ETG P + F D  N  +P    G   S+N C
Sbjct: 223 -------------RLRAGEVFGEIVASAWETGDPGLVFIDRLNRANPTPAAGSFESTNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGS+NL AH      DYD L   +  AVR LD+ ID+N + +  
Sbjct: 270 GEQPLLPYE----ACVLGSLNLAAHVKGGVIDYDALGRDVAVAVRFLDDTIDVNSYPLPA 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++ +  +R IGLG+MG+   L LL IPY   +A  +A E M FI   +  AS  LA+ER
Sbjct: 326 IERMHKGNRKIGLGVMGWADMLVLLGIPYDHEKAFRLAREVMRFIRDASREASCALAKER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +F GS++D    P                                   +RN+    
Sbjct: 386 GVFPNFAGSIYDAPHMPR----------------------------------LRNATTTT 411

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT T++ I   S  I+P +   Y +  +  +   +N + +   K++  +   +  ++ 
Sbjct: 412 IAPTGTLSTIADCSSGIEPLFALAYKRFVLDSELVEINKYFLQMAKEQGFYSVELFQEVM 471

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
              G++  ++ IP  +K++  TA EI P   IE  +  Q++ D A S  + L      + 
Sbjct: 472 RR-GNLRQVKGIPSRVKRLFRTALEILPEHHIEMQAAFQEYTDNAVSKTINLPNRAKKED 530

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           +   Y  A+  G K     R
Sbjct: 531 VARAYLLAYEKGCKGITVFR 550


>gi|302381297|ref|YP_003817120.1| ribonucleoside-diphosphate reductase, subunit alpha [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191925|gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 631

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 209/685 (30%), Positives = 311/685 (45%), Gaps = 104/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +L   RD      G + L DRY L       E  Q  F RV+   A    +    A   Y
Sbjct: 37  ELDRTRDDLLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAYA----DDADHAQRVY 87

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM STP L N G       SCFL +V D L GI     EN  LA   GG+G  
Sbjct: 88  DYMSKLWFMPSTPVLSNGGANRGLPISCFLNSVQDSLDGIQRVWNENVSLASNGGGIGTY 147

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 148 WGGVRSIGEKVK-GAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVHHPEIEEFL 206

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM+ V   + + L SP +                 
Sbjct: 207 EIRKPSGDFNRKSLNLHHGINITDEFMEAVKAGSDFALLSPKD----------------- 249

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V R++ A +LW+K+L +  +TG P++ F D  N + P+        V 
Sbjct: 250 ----------QAVIRRVDARSLWQKILEIRLQTGEPYLIFSDTVNRQMPRHQRELGLKVK 299

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++  +      TAVC L S+N          ++ +    +   +R LDNV
Sbjct: 300 QSNLCSEIMLHTGPDHLGIDRTAVCCLSSVNAEMFL-----EWREEPRFVEDVMRFLDNV 354

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I      +  A  S    R++GLGLMGF S L    + + S  A        + + 
Sbjct: 355 LEDFITRAPPEMAAAVYSAKRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLR 414

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  ASV+LA+E+G                                        D  ++
Sbjct: 415 READKASVKLAEEKGPCE-------------------------------------DAAER 437

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            V     R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L
Sbjct: 438 GVME---RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLL 494

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  +A+ S +  H+GS+ ++  + DD K I  TAFE+D  W++E ++ R   I QA
Sbjct: 495 DGYGANTDAVWSSILEHEGSVQHLTMLNDDEKGIFKTAFELDQRWVVELSADRSPEICQA 554

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+NL++     K  L  ++  AW  G+K+ YYLRS+S   V+++   G + K    P  
Sbjct: 555 QSINLFIPGDVNKWDLHMLHWSAWERGVKSLYYLRSKS---VQRAAFAGAEDKAEVEP-- 609

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           DPN        P   T   EC  CQ
Sbjct: 610 DPNQPDLFSAAP---TDYDECLACQ 631


>gi|73748461|ref|YP_307700.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73660177|emb|CAI82784.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 599

 Score =  453 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 287/641 (44%), Gaps = 85/641 (13%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYN 344
                  ++L  RY    + G  IE P+  F RVA  +A  E +        +   EFY 
Sbjct: 15  RLSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  +
Sbjct: 75  AMSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+ 
Sbjct: 135 SDLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFIS 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D     +   +  +   FM +V     + + +P                    
Sbjct: 195 CKG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHTGE---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + 
Sbjct: 235 -----------VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSG 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N 
Sbjct: 284 CGEQTLLPYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNK 339

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +
Sbjct: 340 FPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSK 399

Query: 701 LAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           LA+ RG++ +++GS++D  G  P                                   MR
Sbjct: 400 LAEIRGSFPAYEGSMYDVPGGRP-----------------------------------MR 424

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDE 818
           N+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++      
Sbjct: 425 NATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSR 484

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            +   L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  + + 
Sbjct: 485 ELFEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFP 543

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            E + + +  ++  A+  GLK     R  S  +    T + 
Sbjct: 544 HEATREDMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSES 584


>gi|237678831|emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]
          Length = 645

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/680 (30%), Positives = 302/680 (44%), Gaps = 102/680 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G   + DRY L       E+ Q  F RV+   A    +    A   Y+
Sbjct: 58  LDRTRDDLLTPFGKLTVTDRYLLAG-----ELLQDMFARVSCAFA----DDVAHAQRLYD 108

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG+G  W
Sbjct: 109 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 168

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  +    G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 169 GNVRSIGEKVK--GGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 226

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    + D FM+ V     + L SP                    
Sbjct: 227 IRKASGDFNRKSLNLHHGINVTDAFMRAVGAGTAFALRSPRT------------------ 268

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHS 581
                      V R+I A  LW+++L    +TG P++ F D  N      Q+ +G  V +
Sbjct: 269 ---------NDVIREIDARQLWQRILENRLQTGEPYLLFIDTVNRSLPKHQRELGLKVST 319

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC+EITL +       E TAVC L S+NL      N+     +   +R    VL + I
Sbjct: 320 SNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWNE-KPGFIEDVMRFLDNVLTHFI 378

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +++A+ +    R++GLG+MGF S L    IP  S  A          I   A +
Sbjct: 379 TVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMESVVAKSFNLNMFRKIRRDADA 438

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV LA+ERG                                        D L++ V   
Sbjct: 439 ASVTLARERGPCP-------------------------------------DALERGVMA- 460

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S  ++P   N+Y    +SG  +V N  L   L  +  
Sbjct: 461 --RFSHKIAIAPTASISIICGGTSACVEPIPANIYTHKTLSGAISVRNPHLAKLLAAKGA 518

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
              A    +  H+GS+ +++ + +  K +  TAFEID  W++E A+ R  +I Q+QS+NL
Sbjct: 519 DTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELAADRAAFICQSQSINL 578

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           YL     K  L  ++  AW  G+K+ YY RS+S +          DG   A P       
Sbjct: 579 YLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA-AFAGNIADGDNAAPP------- 630

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                 P   T   EC  CQ
Sbjct: 631 -----QPQRHTDYEECLACQ 645


>gi|308273142|emb|CBX29745.1| hypothetical protein N47_F14400 [uncultured Desulfobacterium sp.]
          Length = 734

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/650 (27%), Positives = 290/650 (44%), Gaps = 85/650 (13%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSS 348
             L +L  RY      G  IE P+  F+RVA  +A  ++      + EK   +F  LL++
Sbjct: 16  NALIVLEKRYLKKDKEGKAIETPEDMFLRVAKHIASADSLFAGPFDIEKTEKKFLKLLTN 75

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ ++PTL N+G R  QL++CF+  + D +  IF  L+  AM+ K  GG G  ++ +R
Sbjct: 76  LWFLPNSPTLMNAGRRLGQLAACFVLPLEDSMDSIFETLKHTAMIHKSGGGTGFSFSRIR 135

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                +  T G S G I F+ V +     V QGG R+GA    L   H D+E F++L+ +
Sbjct: 136 PEKDIVLSTAGVSSGPISFMTVFDVATETVKQGGTRRGANMGILRVDHPDIESFIELKND 195

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRV----TQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           TG    + ++ N +  + D FM  +     +++ + L +P                    
Sbjct: 196 TG----KLNNFNISVALTDSFMDALSNESDKDSEYDLINPRT------------------ 233

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     ++ R++SA  ++  ++   +  G P I F D  N  +P   +G + ++N 
Sbjct: 234 ---------EQITRRVSARKIFDAIVHSAWLNGEPGIIFIDRINRDNPVPELGNIEATNP 284

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         C LGSINL A  +    +Y +L  TI  +V  LDNV++IN + + 
Sbjct: 285 CGEQPLLPYES----CTLGSINLSAMVSGKAVNYKRLKKTIHDSVHFLDNVVEINKYPLA 340

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + +K +   R IGLG+MGF   L  L I Y S EAV  A++ M FIS  +  AS  LA++
Sbjct: 341 RIEKMSKGTRKIGLGVMGFADMLIKLGISYDSEEAVTQAEKIMSFISEESKIASAALAKK 400

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG ++ +KGS++D    P                                   MRN+   
Sbjct: 401 RGNFAFYKGSIYDSPDTPY----------------------------------MRNATTT 426

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I G S  I+P +  +  +  + G     +N   +   K    + + ++ +
Sbjct: 427 TIAPTGTISIIAGTSSGIEPIFGIVQTRRVLDGKTLSDINPLFIGIAKSEGFYSKNLLDE 486

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +  +  SI  I+ IPD +K +  TA +I P   I   +  Q++ D A S  +     + +
Sbjct: 487 I-TNGTSIQQIDAIPDQIKDLFKTAHDILPEQHINIQAAFQRFTDNAVSKTVNFGPDALR 545

Query: 884 -KLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
             +  +Y  A   G K  T Y   SR    +     K    K+   P  +
Sbjct: 546 SDIAKVYMLAHTKGCKGVTIYRYGSRDHQVLSIGAEKKDSVKIAPRPRPE 595


>gi|154250960|ref|YP_001411784.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154154910|gb|ABS62127.1| ribonucleoside-diphosphate reductase, alpha subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/687 (31%), Positives = 310/687 (45%), Gaps = 106/687 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            + RD      G   L DRY +       E  Q  F RVA   A  +      A   Y+ 
Sbjct: 63  DHGRDALLTEFGKATLRDRYLMPG-----ESYQDMFARVASFYA--DKGDAGHAQRLYDY 115

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W 
Sbjct: 116 ISKLWFMPATPVLSNGGTQRGLPISCFLNEASDSLDGIVGLWNENVWLAAKGGGIGSYWG 175

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL   H ++EEF+++
Sbjct: 176 NLRSIGETV-GGNGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPIDHPEIEEFMEM 234

Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ TG D  R+  +++    + D FM+ V  +A W L SP + S                
Sbjct: 235 RRPTGGDPNRKALNLHHGVLVSDAFMRAVEADAEWQLKSPKDRS---------------- 278

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHS 581
                      V + +SA +LW ++LT   ETG P+I +KD  N   P+ H   G  V +
Sbjct: 279 -----------VQKTVSARSLWIRLLTSRIETGEPYIIYKDTVNNARPEHHKLAGLEVKT 327

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC EITL +  ++     TAVC L S+NL  +      ++    + I   +R LDNV 
Sbjct: 328 SNLCAEITLPTGIDQHGEQRTAVCCLSSLNLETYN-----EWQDHPTIIEDVMRFLDNVL 382

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID     + +AK +    R++GLG+MGF S L    IP+    A          I  
Sbjct: 383 QDFIDRAPDDMRRAKYAAMRERSVGLGVMGFHSYLQANMIPFEGVMAKVWNKRMFARIKE 442

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
              +AS +LA+ERGA                                             
Sbjct: 443 GVDAASKKLAEERGACP------------------------------------------D 460

Query: 753 VKTIGM--RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
               G   R SN  AIAPTA+I+ I G  S  I+P   N +    +SG F V N  L   
Sbjct: 461 AAEYGFNERFSNKTAIAPTASISIITGGTSPGIEPIAANSFTHKTLSGSFNVRNRHLTKL 520

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+ +   D+   S +  + GS+ +++ + D+ K +  TAFE+D  W+IE A  R   +DQ
Sbjct: 521 LELKGRNDDDTWSSIVVNGGSVQHLDFLSDEEKDVFKTAFELDQRWVIEHAGDRAPLVDQ 580

Query: 870 AQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG-VDGKLNAVP 927
           AQS+NL+L     K  L  ++  AW  G+K+ YY RS S    EK+ +   + GK+  V 
Sbjct: 581 AQSVNLFLAADVHKRDLHKLHFMAWQHGVKSLYYCRSLSIQRAEKAEVVSLLPGKVLDVL 640

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             D       +   +      EC  CQ
Sbjct: 641 TLD------QVAAEAQSNDYEECLACQ 661


>gi|330507668|ref|YP_004384096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
 gi|328928476|gb|AEB68278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
          Length = 676

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 186/781 (23%), Positives = 316/781 (40%), Gaps = 139/781 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSK-----IVLSETYKNMYDGLS-ESD 197
           +I   +G ++ F ++++ + + +A    G ++  +       V  E  +     +    +
Sbjct: 4   RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAEERFSRTIPGVEE 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++  +    R LI     YA V   ++L + ++                           
Sbjct: 64  IQDLV---ERALISA--GYADVAKAYILYR-QKRT------------------------- 92

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEM 316
                              ++      L    D        ++L  RY L    G  +E 
Sbjct: 93  -------------------EIREAKRYLGVADDLKLSVNAAEVLKKRYLLRDERGDVVET 133

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEF----YNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           P   F RVA  ++  E++       +      ++ +  F+ ++PTL NS     QLS+CF
Sbjct: 134 PGEMFGRVADHISKAESKYGGDVESYRSLFLQMMRNLEFLPNSPTLMNSRLELGQLSACF 193

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  V D L GIF AL+  A++ +  GG G  ++ +R     +  T G + G + F+++ +
Sbjct: 194 VLPVTDSLPGIFDALKNMALIHQSGGGTGFSFSRLRPKDDVVRATGGVASGPVSFMRIFD 253

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                + QGG+R+GA    L   H D+ EF++ ++  G       + N +    D FM++
Sbjct: 254 TATDVIKQGGRRRGANMGILRVDHPDIMEFIEAKERPG----FLENFNLSVAATDEFMEK 309

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
                   L +P                                  ++ A  L   + T 
Sbjct: 310 SRGEGEIDLINPRTG---------------------------LAGGRLKAAELLGLIATS 342

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            +  G P I F D  N   P    G + ++N C E  L         CNLGSINL     
Sbjct: 343 AWRGGDPGIIFIDRINAAHPLP--GEIEATNPCGEQPLLPYES----CNLGSINLSRLVR 396

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             + D+D+LA  +  AVR LD+VID+N   + + +++  + R IGLG+MGF   L  ++I
Sbjct: 397 KGELDWDRLAELVSLAVRFLDDVIDMNRFPLPQIEEATLSRRKIGLGVMGFADMLIQMNI 456

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            YASP+AV +A++ M FIS HA + S  L +ERG++  F  S   +G             
Sbjct: 457 SYASPQAVALAEKLMGFISEHARAQSARLGEERGSFPLFDSSRL-RG------------- 502

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        W           MRN+    IAPT TI+ I G S  I+P +   +V+
Sbjct: 503 -------------WSA---------MRNATVTTIAPTGTISIIAGTSSGIEPLFALAFVR 540

Query: 793 SNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
             + G     V+        +R ++   +  +L +  GS+  I  +P DLK++  TA +I
Sbjct: 541 RVLEGARLLEVSPLFEKMAMERGIYTPDLKVELAWR-GSVQEIAGLPQDLKELFRTALDI 599

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                +   +  QK+ D A S  + L  E +   +  +YR A+ +G K     R  S + 
Sbjct: 600 SAQQHVRIQAAFQKYTDNAVSKTVNLPAEATVSDVLQVYRLAYDLGCKGVTVFRYGSRSQ 659

Query: 911 V 911
           V
Sbjct: 660 V 660



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR G V  F   KI+ AI KAF AV  +      R+ + +    E+          S
Sbjct: 4   RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAEE--------RFS 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             I  +E+IQD VE +L+ +G+  + + Y+LYR++R+++R A+ +
Sbjct: 56  RTIPGVEEIQDLVERALISAGYADVAKAYILYRQKRTEIREAKRY 100


>gi|330897026|gb|EGH28547.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 417

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/411 (48%), Positives = 271/411 (65%), Gaps = 2/411 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +   +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFL-GVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I 
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416


>gi|254478745|ref|ZP_05092114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035310|gb|EEB76015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
          Length = 724

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/655 (27%), Positives = 295/655 (45%), Gaps = 83/655 (12%)

Query: 299 QILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           ++  DRY L    G  +E  P+  F RVA  +A  E E+E     FY ++S + F+    
Sbjct: 11  KVFLDRYALKDREGKPVEKKPEEMFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGR 66

Query: 357 TLFNSGTRHP-QLSSCFLTTVP--------DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            L  +GT       +CF+  V         D    I   + +   +    GG+G +W+ +
Sbjct: 67  ILAGAGTGREVTYFNCFVIPVEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTL 126

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA++ G  G S G + ++  AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K
Sbjct: 127 RPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK 186

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  +    N +  + D FM+ V Q+  W L  PD     +D      E   +  E 
Sbjct: 187 ----DLTKMQQANLSVAVSDAFMEAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEW 237

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +A      V+++I A  LW K++T  +E+  P + F +  N  S   ++  + S+N C E
Sbjct: 238 KAKGYPTVVYKEIPARELWNKIVTAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGE 297

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           +      E   VCNLG+INL+A   N + ++++L  T++ AVR LDNV+D+  + + + K
Sbjct: 298 L----GLEPYGVCNLGAINLVAFVENGRINFEELEETVKIAVRFLDNVLDLGAYVLPQNK 353

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLGLMG   AL L+++ Y S E+++  +E ++ I   A  ASVELA+E+G 
Sbjct: 354 EMAQKLRRVGLGLMGLADALILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGP 413

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F    + +G F                     RLP  +++  +   G+RN+  +  A
Sbjct: 414 FPEFVADKYLKGQF-------------------IQRLP-KDIRDEIAKYGIRNATILTQA 453

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T + + GVS  I+P++   YV+ + +G  TV +                 ++D    
Sbjct: 454 PTGTTSILAGVSSGIEPNFAKEYVRKDRTGTHTVKHW----------------LADYPA- 496

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                              +A E+ P   ++  +  QK+ID + S  + L    +   +D
Sbjct: 497 -----------------FVSAHEVTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDID 539

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            IYR A+ +G K     R  S   V  +  K  +              T  +  P
Sbjct: 540 NIYRLAYELGCKGITVYRDGSREGVLVTDTKPQEKTKITERPPVLKGITKRIETP 594


>gi|260904663|ref|ZP_05912985.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacterium
           linens BL2]
          Length = 718

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/753 (23%), Positives = 306/753 (40%), Gaps = 88/753 (11%)

Query: 206 SRTLIEKEPNYAKVTARFLLE------KLRR------EVLTTVYKKPQKATHHEMQCLYP 253
           +RT I    +Y  + A   L       +  +      E L        K      + L  
Sbjct: 10  ARTGIGARKDYHALNAELNLFAPDGSIQFDKDRQAAAEYLRQHVVPNTKVFSSVAERLEW 69

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD--FAF-EYLGLQILYDRYFLHIN 310
                Y E G     L     +F    L    ++ R     F  +LG    +  Y L   
Sbjct: 70  LVDHDYYESG----FLAAYTPEF----LTALHEHARAAGHRFATFLGAFKFFTSYALKTF 121

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
                + + F  RV           E+ A    + + S  F  +TPT  N+G  +  +L 
Sbjct: 122 DGTTYL-EGFEERVVATALYLGQGDEQLATGLVDEMLSGRFQPATPTFLNAGKAQRGELV 180

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D+L  I  ++     L+K  GG+    + +R  GA I     ++ GV+P +K
Sbjct: 181 SCFLLRVEDNLESIGRSVNSALQLSKRGGGVALLLSNLREAGAPIKQIENQASGVVPVMK 240

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 241 ILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 300

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V   +     +  ++ ++Y+      +I+    +SA   +R +
Sbjct: 301 FQLAKDNRDMHLFSPYDVQREYGTPLSDLSVS-DHYDELVANPQIRKN-TVSAREFFRTL 358

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++              + 
Sbjct: 359 AELQFESGYPYVLFEDTVNRAN--PLAGHINMSNLCSEILQTNTPSTYDNAIGYQEIGQD 416

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         +   L ST+ TAVR L +V D  N   +    K N    AI
Sbjct: 417 ISCNLGSLNIAQ-----AMNSSDLGSTVETAVRALTSVSDQTNVDAVPSVAKGNDASHAI 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E ++  D     I++HAI AS ++A ER   ++ F+ S 
Sbjct: 472 GLGQMNLHGYLASQRIHYGSEEGIDFTDIYFLTITYHAIRASNQIAIERGKTFAGFEDST 531

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               + E+  +  +   +   W+ L++ VK  G+ N+   A+ 
Sbjct: 532 YADGSYFDKYTQHDWQPATQRVRELFADAGVTIPAGEDWERLRESVKAQGIYNAYLQAVP 591

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + SI P    + ++                         E  +  + Y 
Sbjct: 592 PTGSISYVNNSTASIHPVAAKIEIRK------------------------EGKLGRVYYP 627

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + DD    +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++
Sbjct: 628 A------PHMTDDNVDFYQDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDTATTRDIN 681

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R    +E + ++  
Sbjct: 682 RAQIYAWRKGIKTLYYIRLRQPA-LEGTEIENC 713


>gi|218709885|ref|YP_002417506.1| ribonucleotide reductase r1 chain [Vibrio splendidus LGP32]
 gi|218322904|emb|CAV19081.1| ribonucleotide reductase R1 chain [Vibrio splendidus LGP32]
          Length = 710

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 183/715 (25%), Positives = 306/715 (42%), Gaps = 68/715 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++     + +           L  E     + EG     + E   D   ++      Y+ 
Sbjct: 34  KQAARQFFLQHVNQNTVFFHNL-DEKIDYLLREGYYEAQVIE-QYDRSFLHQIWANAYQA 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  +LG    +  Y L     +  + + F  RV M   L      + A+     +  
Sbjct: 92  KFRFRTFLGAYKFFTSYALKTRDGKRYL-ERFEDRVVMTALLLARGDCEFALALMEEIIH 150

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  GG+    T +
Sbjct: 151 QRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLTNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++
Sbjct: 211 REQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHPDIMQFLDTKR 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+ ++   QN    LFSP +V  ++ +   E  +  E Y  
Sbjct: 271 ENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDVERVYGVPFSEISVT-EKYHE 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             D   I+  + +SA  L++ +  + FE+G+P+I F+D  N  +     G V+ SNLC+E
Sbjct: 330 MVDDPRIRKGK-MSARGLFQTLAEIQFESGYPYIMFEDTVNQAN--PIQGRVNMSNLCSE 386

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               S       CNLGS+N+         D  +L+ T+ TA+R L+ V
Sbjct: 387 ILQVNEASNYDDDLNYSHVGRDISCNLGSVNIA-----KALDGGQLSQTVDTAIRALNAV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            +++  +++   +K N    AIGLG M     L    I Y SPEA++        + +H 
Sbjct: 442 SEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFTSSYFACVLYHC 501

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-------- 745
           + AS +LAQE+   +  F+ S +  G F    +      + ++  +  SRL         
Sbjct: 502 LVASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFSRLDIRIPTVSE 561

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W ELK+ V + G+ N    AI PT +I+ I   + SI P    + ++             
Sbjct: 562 WSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRK------------ 609

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + +    + N         +    AF I P  +I+  +   +
Sbjct: 610 ------------EGKIGRVYFPAPYLNNSNL------EYFRDAFSIGPKAIIDVYAAATE 651

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +DQ  SL L+  DE + + ++     AW   +KT YY+R R    +E + ++G 
Sbjct: 652 HVDQGLSLTLFFDDEVTTRGINKAQIYAWKKKIKTLYYIRMRQKA-LEGTQVEGC 705


>gi|220929802|ref|YP_002506711.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|220000130|gb|ACL76731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulolyticum H10]
          Length = 795

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/654 (26%), Positives = 287/654 (43%), Gaps = 82/654 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFY 343
                  +++L  RY     NG+ +E  +  F RVA  +A        E        EFY
Sbjct: 1   MKLSENAVKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADAAYTDEKGLAVIEHEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           N++++  F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  
Sbjct: 61  NMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRAKGSAVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             + +  +      + N +  I + FM+ V  N  + L  P                   
Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMRAVEHNLEYELLDPRTKK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          K++A  ++  ++ M +E G P I F D  N  +    +G + S+N
Sbjct: 222 ------------PVAKLNAREVFDIIVEMAWENGEPGIIFLDRLNRDNVTPKLGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L         CNLGSINL     +     D++KL  T+R AVR LDNVI++N +
Sbjct: 270 PCGEQPLLPYE----ACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  +     R IGLG+MG+   L  L + Y S  A+++AD+ M FI+  A  AS  L
Sbjct: 326 PLPEIDRMTRGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G +  ++ S++ Q                                   K I MRN+
Sbjct: 386 AELKGVFPFYEDSIYAQ-----------------------------------KGIKMRNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
               IAPT T++ I GVS  I+P +   Y+++ M     V  + +  E      +    +
Sbjct: 411 TTTTIAPTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKEAALSGNFYSDEL 470

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                  G++ N+  +P ++++I  TA ++ P W ++  +  Q+  D A S  +    + 
Sbjct: 471 MKKIARVGTVKNMNEVPTNVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHDA 530

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           +   +  ++  A+    K  T Y   SR    +    +KG +   +       N
Sbjct: 531 TTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKSLPAGEN 584


>gi|240047143|ref|YP_002960531.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           conjunctivae HRC/581]
 gi|239984715|emb|CAT04687.1| Ribonucleoside-diphosphate reductase [Mycoplasma conjunctivae]
          Length = 720

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/773 (23%), Positives = 312/773 (40%), Gaps = 105/773 (13%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY------FCRYIEEGVKARL 268
            Y  + A+  L    +E      +  +    + ++  + ++          IE       
Sbjct: 17  EYIALNAKSKLFTKYKEAYKFDLQAAKSYIQNHIEPKFRKFENFHQRIQWLIENKFYDPQ 76

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAM 326
           +       +L  L       + F   ++G    Y  Y L  N     +E  +   +  A+
Sbjct: 77  VINEYTFDELEKLNEQAYSYKHFFPSFMGAFKFYLSYALKSNDGQQYLEHFEDRALMNAL 136

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
            LA    EK  + +    L     F  +TPT  N+G     +  SC+L  V D++  I  
Sbjct: 137 FLARGNYEKASKILRQIML---GRFQPATPTFLNAGKLNRGEFISCYLIRVEDNMESISR 193

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R+
Sbjct: 194 AVTTSLQLSKRGGGVSVLLSNLREQGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQ 253

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFS  
Sbjct: 254 GAGAVYLNVHHPDILNFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNQDMALFSVY 313

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +V + +     +  I  E Y    +    K F  ISA  L+  +  + FE+G+P+I F+D
Sbjct: 314 DVQNEYGKAFSDISITEEYYNLLNNDRIKKTF--ISARKLFTLIAELHFESGYPYILFED 371

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFAN 613
             N R+   +   +  SNLC+EI   S+  E               CNLGS+N+     +
Sbjct: 372 TVNKRNAHPN--RIVMSNLCSEIAQPSTPSEYLPDLTFSKIGQDICCNLGSLNIDKAMKS 429

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            +    +    +  ++  LD+V   +  +     +K N  + A+GLG M     L    I
Sbjct: 430 GK----EFGEMVYYSILALDHVSRNSDLSAAPSIEKGNKLNHAVGLGAMNLHGFLSQNQI 485

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----- 727
            Y SPEA++  +     ++FHA  +S  LAQ+ G +S F+ + +  G +           
Sbjct: 486 FYDSPEALDFTNIFFYTMAFHAFKSSSILAQKFGPFSGFENTKFANGSYFDKYTKAKSGE 545

Query: 728 ------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  + E+     +   ++  W +L + +K +G+ NS+ MAIAPT +I+ +   + S
Sbjct: 546 FEPKTQKIKEIFAHYKVEIPTKQDWIDLVENIKRVGLANSHLMAIAPTGSISYLNSCTPS 605

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    + V+         V ++ +N                              D++
Sbjct: 606 LQPVVSPVEVRKEGKLGRVYVPAYKINF-----------------------------DNM 636

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTT 900
           +     A+E+ P+ +I  A+  QK IDQ+ SL L+  D+ + + L+  Y  A+  G  + 
Sbjct: 637 RYYAKGAYELGPIPIINIAAEAQKHIDQSISLTLFLTDKATTRDLNKAYIHAFKKGCGSI 696

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YY+R R      +  L+  +                            ECE C
Sbjct: 697 YYVRIR------QEVLEDSEK-------------------------YDECEAC 718


>gi|114798532|ref|YP_759596.1| ribonucleotide-diphosphate reductase subunit alpha [Hyphomonas
           neptunium ATCC 15444]
 gi|114738706|gb|ABI76831.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 593

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 204/679 (30%), Positives = 302/679 (44%), Gaps = 104/679 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    +  +     Y+ 
Sbjct: 9   DPSRDSLLTDFGKKTLDDRYLLPG-----ETYQDMFARVATAYA----DDAEHGQRIYDY 59

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  V D L  I     EN  LA   GG+G  W 
Sbjct: 60  ISRLWFMPATPVLSNGGADRGLPISCFLNQVGDSLDDIVETWTENVWLASNGGGIGTYWG 119

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +   NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 120 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEI 178

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V  +  + L SP                     
Sbjct: 179 RKTSGDFNRKSLNLHHGINITDAFMEAVRNDEEFGLISPKSGE----------------- 221

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHSS 582
                     V + ++A  LW+K+L +  +TG P++ F D  N    + Q+ +G  V  S
Sbjct: 222 ----------VLKYVNARKLWQKLLELRMQTGEPYLLFTDTVNNALPAHQKRLGLKVTQS 271

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EITL +  +      TAVC L S+N          +   L    R    VL++ I 
Sbjct: 272 NLCSEITLPTGVDHRGTDRTAVCCLSSVNAETFL-EWSKEPMFLEDIFRFLDNVLEDFIQ 330

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +A  S    R++GLG+MGF S L  +++   S  A  +  +  + I   A +A
Sbjct: 331 RAPPEMARAVYSAKRERSVGLGVMGFHSFLQAMNVSMESATAKSLNLKIFKHIRQGADAA 390

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA+ERG                        + RD   M                   
Sbjct: 391 SVKLAKERGPCE---------------------DARDVGMMA------------------ 411

Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R SN MA+APTA+I+ IC G S  I+P   N+Y    +SG FTV N  L   L  + L 
Sbjct: 412 -RFSNKMAVAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNQQLETLLDTKGLN 470

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              + + +  H+GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I Q+QSLNL+
Sbjct: 471 TNEIWTSILEHEGSVQHLDCLDAHEKDVFKTAFELDQRWIIELAADRTPFICQSQSLNLF 530

Query: 877 LDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L     K  L  ++  AW  GLK+ YY RS+S      +  +  +     V  TD     
Sbjct: 531 LPGDINKWDLHMLHWTAWERGLKSLYYCRSKSVQRAAFAGSEKAEASTLEVARTD----- 585

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                        EC  CQ
Sbjct: 586 -----------YDECLACQ 593


>gi|262039139|ref|ZP_06012465.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746836|gb|EEY34349.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
          Length = 712

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 182/731 (24%), Positives = 308/731 (42%), Gaps = 78/731 (10%)

Query: 215 NYAKVTARFLL-----EKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            +  +    ++      +L ++   V +       K T         E     IE     
Sbjct: 21  KWIYLNNEIMVKENGEFQLNKDKEAVYSYFVDYVNKNTVFFHNL--KEKMDYLIENDYYI 78

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323
                 M  F+ +    +L Y + F F  ++     Y  Y L  +     +E  +     
Sbjct: 79  NFYD--MYKFEEIKQVFELVYNKKFRFASFMSASKFYQSYALRDDSGEKFLERYEDRIAI 136

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           V++ LA  +  K   A+E+  +L +  +  +TPT  NSG +   +L SCFL  + D+L G
Sbjct: 137 VSLYLAQGDLSK---AMEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSG 193

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      L+   GG+  + + VR  G  I G  G++ GV+P +K+  D     NQ G
Sbjct: 194 IGYAFDSAMKLSSIGGGVSINLSKVRARGESIKGVEGRASGVLPIMKIMEDIFSYANQLG 253

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+ EFLD +K   D++ R   ++    +PD FM+   ++     F
Sbjct: 254 QRAGAGAVYLNVFHSDINEFLDCKKINVDEKIRIKSLSIGVIVPDKFMELAKEDEICYTF 313

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  Y  E ++  E YE+  D       +KI+A  L  K+     E+G+P++ 
Sbjct: 314 NPHTVFLEYGQYLDEMDM-NEMYEKLVDNP-NVKKKKINARELLIKISQTQKESGYPYLF 371

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV-----CNLGSINLLAH 610
           FKD  N     + +G V  SNLCTEI         N   EE  +     CNLGS+N++  
Sbjct: 372 FKDNANKEHALKEIGNVKFSNLCTEIMQLSEVSDINPYFEEDTIRRGISCNLGSLNIVTV 431

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             NN     ++    R A+  L  V D  N   +   KK+N    ++GLG M     L  
Sbjct: 432 MENN-----RIREATRAAIDSLTTVSDLTNIDIVPSIKKANEELHSVGLGAMNLHGFLAK 486

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S EA++  +     ++++++  S+E+A+ER   +  F  S +  G +    I  
Sbjct: 487 NFIMYESKEALDFCNVFFMMMNYYSLERSMEIARERGEVFKDFDKSEYANGNYFNKYIEK 546

Query: 729 -----LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                  ++++    +   ++  W +LK+ V   G+ N+  MAIAP  + + I   + S+
Sbjct: 547 SYFPQTEKIKELFDGIYVPTKEDWAKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNSTASV 606

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + V+            +L N                               D  
Sbjct: 607 MPIVDTIEVREYGDSTTFYPMPYLTN-------------------------------DNY 635

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             + +A+++D   +++  S  Q+ +DQ  S  L+     + + L  +Y     +GLK+ Y
Sbjct: 636 FFYKSAYDMDQKNILKLVSVIQRHVDQGISTILFNKSTDTTRDLAKLYIYGHRLGLKSLY 695

Query: 902 YLRSRSATSVE 912
           Y R+R AT  E
Sbjct: 696 YTRTRKATIEE 706


>gi|224371724|ref|YP_002605888.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfobacterium autotrophicum HRM2]
 gi|223694441|gb|ACN17724.1| NrdA [Desulfobacterium autotrophicum HRM2]
          Length = 736

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/628 (27%), Positives = 276/628 (43%), Gaps = 81/628 (12%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFM 352
           L +L  RY      G  +E P   FMRVA  +A  E     +       FY +++   F+
Sbjct: 17  LTVLKRRYLQKDKRGRVVETPGQMFMRVASYIAAAEKAHGNDPGVYRDLFYGIMARLEFL 76

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QL++CF+  V D + GIF  ++  A++ K  GG G  ++ +R   +
Sbjct: 77  PNSPTLMNAGTDLGQLAACFVLPVEDSISGIFETVKNAALIHKSGGGTGFSFSRLRPKDS 136

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+K+ N     V QGG R+GA  A L   H D+ EF+  ++ + D 
Sbjct: 137 RVGSTGGVASGPVSFMKIFNVATEQVKQGGTRRGANMAVLRVDHPDIMEFILCKQASAD- 195

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + D FM +      + L  P +                          
Sbjct: 196 ---LNNFNISVGVTDEFMVKARTGLPYNLVDPRDG------------------------- 227

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   ++A  ++  M+   +  G P I F D  N  +P   +G + S+N C E  L  
Sbjct: 228 --RVVGTLNATDVFEAMVKQAWHNGDPGIIFLDRINQDNPTPLLGEIESTNPCGEQPLLP 285

Query: 593 SSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  CNLGS+NL       +     DY  L  TI  AVR LD+ ID + + +++   
Sbjct: 286 ME----ACNLGSVNLAKFVVEKKGKPTIDYASLGKTIALAVRFLDDTIDRSIYPLDEITA 341

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLG+MGF   L  L +PY S  AV +A+E M F+   A  AS  LAQERG +
Sbjct: 342 MVRGNRKIGLGVMGFADLLFALELPYNSDRAVALAEEVMAFVQSEARKASRALAQERGVF 401

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F  S++                                  +  K    RN+    IAP
Sbjct: 402 ENFDKSVF----------------------------------RNDKDRRFRNATVTTIAP 427

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   ++++ M  + F  VN   +   + +  + EA++  +   
Sbjct: 428 TGTLSIIAGSSSGIEPLFALSFIRTIMDNETFLEVNPHFMAVAQAQGFYSEALMEKI-AK 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886
            G+I  +  IP+ ++K+  TA ++ P W ++  +  QK  D A S  + L   + +  + 
Sbjct: 487 TGTIKGMTEIPESVRKVFVTAHDVSPAWHVKMQAAFQKHTDNAVSKTVNLPRDATEHDVA 546

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            IY  A+  G K     R  S  +   S
Sbjct: 547 EIYTSAFDFGCKGVTIYRDGSKANQVLS 574


>gi|23335915|ref|ZP_00121146.1| COG0209: Ribonucleotide reductase, alpha subunit [Bifidobacterium
           longum DJO10A]
 gi|23465252|ref|NP_695855.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum NCC2705]
 gi|189440324|ref|YP_001955405.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum DJO10A]
 gi|227547059|ref|ZP_03977108.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|296455121|ref|YP_003662265.1| ribonucleoside-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. longum JDM301]
 gi|312133658|ref|YP_004000997.1| nrda [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690139|ref|YP_004209873.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis 157F]
 gi|23325883|gb|AAN24491.1| NrdE [Bifidobacterium longum NCC2705]
 gi|189428759|gb|ACD98907.1| Ribonucleotide reductase alpha subunit [Bifidobacterium longum
           DJO10A]
 gi|227212476|gb|EEI80365.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517760|emb|CBK71376.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|296184553|gb|ADH01435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311772920|gb|ADQ02408.1| NrdA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320461475|dbj|BAJ72095.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 731

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/755 (22%), Positives = 297/755 (39%), Gaps = 81/755 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L          + +     Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI 314
               I        +        L  +   ++    F F  +LG    Y  Y L     R+
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRL 133

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
            + + F  R A          E++A+E+ + + +  F  +TPT  N G  +  +  SCFL
Sbjct: 134 YL-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFL 192

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D
Sbjct: 193 VRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLED 252

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +  
Sbjct: 253 SFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELA 312

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            Q A   LFSP +V  ++     +  +  E+Y+      +      I A   +  +  + 
Sbjct: 313 KQKAQMALFSPYDVERVYGKPFADISVT-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N  +     G V  SNLC+EI                       CN
Sbjct: 371 FESGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCN 428

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+             L  T+ TA+R L +V +    + +   +++N    AIGLG 
Sbjct: 429 LGSLNIAKAMDGG------LGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQ 482

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD-- 717
           M     L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S +   
Sbjct: 483 MNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKP 542

Query: 718 --QGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             QG +                 +  + ++  +   +   W+ L+  +   G+ N N  A
Sbjct: 543 AGQGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQA 602

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 603 VPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVY 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D    +  A+EI    ++++ +   + +DQ  SL L+  D  + + 
Sbjct: 639 YPAA------YMTNDNLGYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+     AW  G+KT YY+R R   ++E + ++G 
Sbjct: 693 LNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|258404144|ref|YP_003196886.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfohalobium
           retbaense DSM 5692]
 gi|257796371|gb|ACV67308.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfohalobium retbaense DSM 5692]
          Length = 742

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/653 (26%), Positives = 289/653 (44%), Gaps = 80/653 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE-------KRAVE 341
           D +       +L  RY      G  +E PQ  F RVA  +A  ET  E         A  
Sbjct: 9   DLSLSENAELVLRKRYVRKGPEGEEMETPQELFWRVAAAIAASETAYEQTPFSQEALARR 68

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++S  F  ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G
Sbjct: 69  FYDLMASCRFFPNSPTLMNAGTELGQLAACFVLPVGDSMEEIFDAIKYAALIHKSGGGTG 128

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     V QGG R+GA    L   H D+ E
Sbjct: 129 FSFSRLRAADSRVGSTGGVASGPISFLRIFNTATEQVKQGGTRRGANMGILRVDHPDILE 188

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+ +++  G+     ++ N +  + + FM+RV  +A + L +P                 
Sbjct: 189 FIRVKEREGE----LNNFNLSVALTEDFMRRVEADAEYPLIAPQS--------------- 229

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E++  R        + A  ++  ++   +E+G P I F D  N  +P   +G + +
Sbjct: 230 ----EKEVGR--------LRAREVFTLLVQKAWESGDPGIIFLDRINRDNPTPQLGDIEA 277

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDIN 639
           +N C E  L         CNLGSINL         + D++ L  ++  AVR LDNVID +
Sbjct: 278 TNPCGEQPLLPYE----ACNLGSINLSRFADAPAQELDWEGLRESVHLAVRFLDNVIDAS 333

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +       +R IGLG+MG+   L+ L I Y S +A+ + ++ M+FI   A SAS 
Sbjct: 334 VYPLPQITDQVKRNRKIGLGIMGWADLLYQLRIAYDSRQALSLGEKVMDFIQKEARSASK 393

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA+ERG + ++  S++ +                                        R
Sbjct: 394 DLARERGPFPAYADSVFGKQNL----------------------------------GPYR 419

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+    IAPT T++ + G S  I+P +   +V+  M G+  V  + +  +  +       
Sbjct: 420 NATTTTIAPTGTLSILAGCSSGIEPLFALSFVREVMDGERLVETNPIFRQAMEEAGCASQ 479

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
            + D     G++ ++E +PDD++ +  TA +ID    +   +  QK+ D A S  +    
Sbjct: 480 RLLDEVARKGTVRDMELVPDDMRNVFVTAMDIDGEAHLRMQAAFQKYTDNAVSKTVNLPH 539

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           E + + +  IY  A+  G K     R    +    ST +    +        P
Sbjct: 540 EATQEDIRHIYWLAYEQGCKGVTVYRDGCKSVQVLSTEESRSQRQAEEEGKAP 592


>gi|3077613|emb|CAA70765.1| ribonucleotide reductase subunit R1E [Corynebacterium ammoniagenes]
          Length = 720

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/716 (25%), Positives = 296/716 (41%), Gaps = 69/716 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE     + +           L  E     +E       + E+  D++ +       Y  
Sbjct: 43  REAANQYFLQHVNQNTVYFHDL-EEKIEYLVENKYYEPEVIEA-YDWEFIKSLFKRAYSF 100

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  +LG    Y  Y L     R  + + F  RV+M            A    + + S
Sbjct: 101 KFRFKSFLGAYKYYTSYTLKTFDGRRYL-ERFEDRVSMTALFLADGDTAVAESMVDEIMS 159

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  +  +L SCFL  + D++  I  A+  +  L+K  GG+    + +
Sbjct: 160 GRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 220 RESGAPIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKR 279

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYE 526
              D++ R   ++    IPD+      +N    LFSP +V     +YGK F +I+  ++ 
Sbjct: 280 ENADEKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSPYDV---ERVYGKPFGDISVSDHY 336

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +         +KI+A   ++ +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+
Sbjct: 337 AEMVEDPRITKKKINARHFFQTVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSNLCS 395

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI   +S                  CNLGS+N+         D      T+  A+R L  
Sbjct: 396 EILQVNSPSSFNDDLSYEEMGSDISCNLGSMNIAL-----AMDSPDFGGTVEAAIRGLTA 450

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D     ++   +  N    AIGLG M     L   HI Y S E ++  +     + + 
Sbjct: 451 VADKTAIDSVPSIRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYA 510

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRL 744
           A+ AS ++A+ER   +S FK S +  GVF  +            + E+     ++  S  
Sbjct: 511 ALRASNKIAKERGETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAE 570

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++            
Sbjct: 571 DWADLKAEVMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK----------- 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E  I  + Y          + +D       A+E+    +I++ +   
Sbjct: 620 -------------EGKIGRVYYPA------PHMDNDNLDYFQDAYEVGHEKIIDTYAVAT 660

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           K++DQ  SL L+  D  + + ++     AW  G+KT YY+R R       + ++G 
Sbjct: 661 KYVDQGLSLTLFFRDTAATRDINRAQIFAWRKGIKTLYYIRLRQMALA-GTEIEGC 715


>gi|239622881|ref|ZP_04665912.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239514878|gb|EEQ54745.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 731

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/755 (22%), Positives = 297/755 (39%), Gaps = 81/755 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L          + +     Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI 314
               I        +        L  +   ++    F F  +LG    Y  Y L     R+
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRL 133

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
            + + F  R A          E++A+E+ + + +  F  +TPT  N G  +  +  SCFL
Sbjct: 134 YL-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFL 192

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D
Sbjct: 193 VRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLED 252

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +  
Sbjct: 253 SFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELA 312

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            Q A   LFSP +V  ++     +  +  E+Y+      +      I A   +  +  + 
Sbjct: 313 KQKAQMALFSPYDVERVYGKPFADISVT-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N  +     G V  SNLC+EI                       CN
Sbjct: 371 FESGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCN 428

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+             L  T+ TA+R L +V +    + +   +++N    AIGLG 
Sbjct: 429 LGSLNIAKTMDGG------LGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQ 482

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD-- 717
           M     L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S +   
Sbjct: 483 MNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKP 542

Query: 718 --QGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             QG +                 +  + ++  +   +   W+ L+  +   G+ N N  A
Sbjct: 543 AGQGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWETLRDAILKDGIYNQNLQA 602

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 603 VPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVY 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D    +  A+EI    ++++ +   + +DQ  SL L+  D  + + 
Sbjct: 639 YPAA------YMTNDNLGYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+     AW  G+KT YY+R R   ++E + ++G 
Sbjct: 693 LNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|289575761|ref|ZP_06455988.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
 gi|289540192|gb|EFD44770.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
          Length = 783

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/719 (24%), Positives = 292/719 (40%), Gaps = 85/719 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF--IYRQA 892
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + ++   IYR A
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYRLA 696


>gi|322692091|ref|YP_004221661.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456947|dbj|BAJ67569.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 731

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/755 (22%), Positives = 297/755 (39%), Gaps = 81/755 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L          + +     Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASAAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI 314
               I        +        L  +   ++    F F  +LG    Y  Y L     R+
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRL 133

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
            + + F  R A          E++A+E+ + + +  F  +TPT  N G  +  +  SCFL
Sbjct: 134 YL-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFL 192

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D
Sbjct: 193 VRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLED 252

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +  
Sbjct: 253 SFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELA 312

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            Q A   LFSP +V  ++     +  +  E+Y+      +      I A   +  +  + 
Sbjct: 313 KQKAQMALFSPYDVERVYGKPFADISVT-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N  +     G V  SNLC+EI                       CN
Sbjct: 371 FESGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCN 428

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+             L  T+ TA+R L +V +    + +   +++N    AIGLG 
Sbjct: 429 LGSLNIAKAMDGG------LGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQ 482

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD-- 717
           M     L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S +   
Sbjct: 483 MNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKP 542

Query: 718 --QGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             QG +                 +  + ++  +   +   W+ L+  +   G+ N N  A
Sbjct: 543 AGQGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQA 602

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 603 VPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVY 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D    +  A+EI    ++++ +   + +DQ  SL L+  D  + + 
Sbjct: 639 YPAA------YMTNDNLGYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+     AW  G+KT YY+R R   ++E + ++G 
Sbjct: 693 LNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|147669241|ref|YP_001214059.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
 gi|146270189|gb|ABQ17181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 599

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 286/641 (44%), Gaps = 85/641 (13%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYN 344
                  ++L  RY    + G  IE P+  F RVA  +A  E +        +   EFY 
Sbjct: 15  RLSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  +
Sbjct: 75  AMSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+ 
Sbjct: 135 SDLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFIS 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D     +   +  +   FM +V     + + +P                    
Sbjct: 195 CKG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHTGE---------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + 
Sbjct: 235 -----------VVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSG 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINC 640
           C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N 
Sbjct: 284 CGEQTLLPYES----CNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNK 339

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +
Sbjct: 340 FPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSK 399

Query: 701 LAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           LA+ RG++ +++GS++D  G  P                                   MR
Sbjct: 400 LAEVRGSFPAYEGSMYDVPGGRP-----------------------------------MR 424

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDE 818
           N+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++      
Sbjct: 425 NATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSR 484

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YL 877
            +   L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  + + 
Sbjct: 485 ELFEKLVSSN-HLHDMECIPDWLKRLLVTAHCIRPEWHIRIQAAFQKYTDNAVSKTVNFP 543

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            E +   +  ++  A+  GLK     R  S  +    T + 
Sbjct: 544 HEATRADMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSES 584


>gi|296170901|ref|ZP_06852438.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894450|gb|EFG74194.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 701

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 184/794 (23%), Positives = 307/794 (38%), Gaps = 134/794 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSG-------LQDVSSKIVLSETYKNMYDGLSESDL 198
            +   DG L+ F+  R+E  +  A          L  + ++ V          G+   + 
Sbjct: 13  NVRRRDGRLVPFDVARIETAIGRAAREAGHRDPQLPALLARSVADALVGRFRSGIPTVEG 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
              L+                 AR   + L                  ++   Y      
Sbjct: 73  IQDLVE----------------ARLTADGL-----------------DDVARAYA----- 94

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317
                V  R   E     +L+ + ++LK           + +L +RY L  + G  +E  
Sbjct: 95  -----VYRRQHAELRATKELLGVRDELK------LSVAAVTVLGERYLLRDDRGRPVEST 143

Query: 318 QAFFMRVAMGLALKETE-----KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
                RVA  +A  E +       + A  F  LL    F+ ++PTL N+GT    LS CF
Sbjct: 144 GEMMDRVADHVAGAEEKFRPGSSAQWAQRFSALLRGLEFLPNSPTLMNAGTELGLLSGCF 203

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  V D L+ IF AL + A + +  GG G  ++ +R  G  +  T G + G + FL++ +
Sbjct: 204 VLPVDDSLHSIFTALAQGADIHQAGGGTGYTFSHLRPTGDLVVRTGGTASGPLSFLRLFD 263

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             A  ++ GG+R+GA  A L+  H D+ +F+  +  +  +    +  N +  + D F++ 
Sbjct: 264 YAAAVISMGGRRRGASMAVLDVSHPDIYDFVTAKSGSQTE---LNQFNLSVGVTDEFLRA 320

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +     L +P                                   +SA  L+  +   
Sbjct: 321 VGRGGSHRLVNPRTGK---------------------------TAATVSAADLFTAICEA 353

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
               G P + F D  N  +P   +G + ++N C E+ L         CNLGSINL     
Sbjct: 354 AHRCGDPGLVFLDTINRANPTPALGRIEATNPCGEVPLLPYES----CNLGSINLARMVG 409

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D+++L +    AVR LD+VID++     + + +    R IGLG+MG    L  L I
Sbjct: 410 AGGVDWERLTAVAELAVRFLDDVIDVSRLPFPEVEAATTATRKIGLGVMGLAELLAGLGI 469

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S   V +A      ++  A +AS  LA+ERG + +F  S +  G  P          
Sbjct: 470 PYDSERGVRLAARIARTVNRAAHAASERLAEERGPFPAFGHSRFA-GSAP---------- 518

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                                     RN+   +IAPT TI+ I G S  I+P +   Y++
Sbjct: 519 -------------------------RRNAQLTSIAPTGTISLIAGTSAGIEPMFAIAYIR 553

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           + +      VN       + R  +   +I+++  H G +     +P +++    TA EI 
Sbjct: 554 AVIGRRLLEVNPCFDRLARDRGFYHPDLIAEIARHGG-VRRDPHVPAEVRAAFPTAAEIA 612

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P W +   +  Q+ +D A S  + L  E + + +  IY  AW   +K     R  S    
Sbjct: 613 PEWHLRMQAAVQRHVDAAVSKTVNLPAESTVEDVRTIYLAAWRARVKGITVYRYGSRAGQ 672

Query: 912 EKSTLKGVDGKLNA 925
             S +   +  L A
Sbjct: 673 VLSYVGTDEALLAA 686



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V +R+G +  FD ++I  AI +A      +              L  ++V   L     
Sbjct: 13  NVRRRDGRLVPFDVARIETAIGRAAREAGHRDPQLPA--------LLARSVADALVGRFR 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + I  +E IQD VE  L   G   + R Y +YR + +++RA + 
Sbjct: 65  SGIPTVEGIQDLVEARLTADGLDDVARAYAVYRRQHAELRATKE 108


>gi|258542156|ref|YP_003187589.1| ribonucleotide-diphosphate reductase subunit alpha [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633234|dbj|BAH99209.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636293|dbj|BAI02262.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639346|dbj|BAI05308.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642402|dbj|BAI08357.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645457|dbj|BAI11405.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648510|dbj|BAI14451.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651563|dbj|BAI17497.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654554|dbj|BAI20481.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 643

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/684 (31%), Positives = 311/684 (45%), Gaps = 102/684 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L +RY L   G      Q  F RVA             A   Y+ 
Sbjct: 47  DRSRDALLTPFGKATLDNRYLLPDEG-----YQDLFGRVASYYGA----DAAHAQRIYDY 97

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 98  ISKHWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYWG 157

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++L
Sbjct: 158 NLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIEL 216

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  R+  +++    + D FM+ V  +  W L SP + S                
Sbjct: 217 RRPTGGDPNRKALNLHHGVLVSDAFMRAVESDDEWALISPKDGS---------------- 260

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHS 581
                      V RKISA  LW ++LT   E G P+I + D  N   P+ H   G  V +
Sbjct: 261 -----------VIRKISARGLWIRILTARMEQGEPYIVYSDHVNNARPEHHKLAGLEVKT 309

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC+EITL +  +      TAVC L S+NL          +      I   +  LDNV 
Sbjct: 310 SNLCSEITLPTGIDHHGKARTAVCCLSSLNL-----ETWDQWKDNPQFIEDVMLFLDNVL 364

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID     + +AK +    R++GLG+MGF S L   ++P+ S  A     +  + I  
Sbjct: 365 QDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHSFLQSRNVPFESVVAKVWNRKIFKHIRE 424

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +AS +LA+ RG     +      G+                                
Sbjct: 425 QADAASRKLAELRGPCPDAEE----YGIME------------------------------ 450

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L+
Sbjct: 451 ------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQKLLE 504

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++      + S +    GS+ +++ +    K +  TAFE+D  W++E A+ RQ +I QAQ
Sbjct: 505 EKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRQPFICQAQ 564

Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S+NL+L     K  L  I+  AW  GLK+ YY RS S    +  T+  V  K +   V +
Sbjct: 565 SVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLSIQRAD--TVSNVLAKND---VMN 619

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
            +SS  S G  SS     EC  CQ
Sbjct: 620 VDSSQASSGSASSGNDYEECLACQ 643


>gi|227529512|ref|ZP_03959561.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350597|gb|EEJ40888.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
          Length = 723

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/714 (23%), Positives = 295/714 (41%), Gaps = 84/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +    K   K                YIE+G       +   D  +  L + LK ++
Sbjct: 38  KDFIENNVKPNTKQFASVTARYKWLEDNDYIEDG-----FMDKYSDAFIEKLYDYLK-QQ 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + + +  RVAM         E+ A+   + +  
Sbjct: 92  NFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMILADEIIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N G  R  +  SCF     D++  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPTFLNVGRKRRGEFVSCFAIQPTDNMNTIGRTINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I      + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 211 REAGAPIKKIENAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V ++    LFSP +V  ++       +I  E Y+ 
Sbjct: 271 ENADEKIRLKTLSLGVTVPDKFYELVEKDEDMYLFSPYDVERVYGKPFSYVDIT-EEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                EI   +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 330 MVANDEIHK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRDN--PIDGKIVMSNLCSE 386

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+      N  +      +IR  VR L  +
Sbjct: 387 IAQVQTPSIVADDQSYETLGTDISCNLGSTNIA-----NMMNTPDFGRSIRAIVRGLTRI 441

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   KK N    +IGLG MG    L   HI Y SP AVE        +++ +
Sbjct: 442 SDVESLDVVPSIKKGNELSHSIGLGAMGLHGYLAKNHIQYGSPVAVEFTSVYFMLLNYWS 501

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWD 747
           + AS E+A+E    + +F+ S +  G +    +      + +L       ++  +   W 
Sbjct: 502 LVASNEIAKERHETFHNFEKSKYADGSYFDKYVSKDWGPKSDLVKKLFANIHIPTIDDWK 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK  V   G+ N   +A+AP  + + I   + S+ P    +  +               
Sbjct: 562 KLKDDVMADGLYNEYRLAVAPNGSTSYINDSTASLTPIINRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E MI  + Y          + +D    + +A+++D   +I++ +  Q+ +
Sbjct: 608 ----------EKMIGKIYYPA------PYLSNDTMPYYRSAYDMDMRTVIDTYAAAQQHV 651

Query: 868 DQAQSLNLY----------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ+ SL L+                 ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 652 DQSLSLTLFVRSTMPEGLYEWKNGRTNKMTTRDLNILRHYAYKKGIKSIYYVRT 705


>gi|323450453|gb|EGB06334.1| hypothetical protein AURANDRAFT_54285 [Aureococcus anophagefferens]
          Length = 555

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 160/490 (32%), Positives = 260/490 (53%), Gaps = 26/490 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
               ++++  +G   +    ++   +++ C G     +    +  +  + +YDG++  +L
Sbjct: 3   ADDDMQVVKRNGKKETVRYDKITSRIKKLCYGFDAKYIKPNQITQKVIQGVYDGVTTHEL 62

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRR---EVLTTVYKKPQKATHHEMQCLYPEY 255
           +     ++  +  + P+++ + AR  +  L +   +  + V +K  K  H + +      
Sbjct: 63  DELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEKLHKHVHPKTKKP---- 118

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I +   A +            +   + Y+RDF ++Y G + L   Y + ++G+  E
Sbjct: 119 -AALISDETYATVQKHK------DAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAE 171

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ   MRVA+G+     +    A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  
Sbjct: 172 RPQHMIMRVALGIHG---DDLAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLA 228

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +  D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDT
Sbjct: 229 MKEDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDT 288

Query: 435 AVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           A  V+QGG+R+ G+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV
Sbjct: 289 ARYVDQGGRRRKGSFAIYLEPWHADIEMWLDLKKNHGNELERARDLFYGLWIPDLFMKRV 348

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N  W+L  P+E   L D +G +FE  YE YE +         + I A  LW  +L   
Sbjct: 349 EANGFWSLMCPNECPGLADCHGAKFEALYERYEAEGCAR-----KAIPAQQLWFAILDSQ 403

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            ETG P++ +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL +  + 
Sbjct: 404 VETGTPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLGSEVSG 463

Query: 614 NQFDYDKLAS 623
              +  +L  
Sbjct: 464 ATHNSKRLGR 473


>gi|301300445|ref|ZP_07206645.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851942|gb|EFK79626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 723

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/714 (23%), Positives = 297/714 (41%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +  K    +   +             +   + +   +F +  L + LK E 
Sbjct: 34  KEALEAFLNENVKPNTKQFSSIKERINYLIQNNYYEEEFISKYSFEF-IEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 330 MVANPNIPK-KVIKARDLEEQISKLQQESGYPYVINIDTANRVN--PISGKIVMSNLCSE 386

Query: 588 I-------TLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I        +N+  E         CNLGS N++   A+  F       ++    R L  V
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNF-----GKSVEVMTRALTFV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   +  N     IGLG MG  + L    I Y SPEA+E        +++  
Sbjct: 442 TDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWT 501

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           + AS ++A+ER   + +F+ S +  G +    +      ++         +   ++  W 
Sbjct: 502 LVASNKIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIPTKSDWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +               
Sbjct: 562 SLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y          + ++    + +A++ D   +I++ +  Q+ +
Sbjct: 608 ----------ERKIGKIYYPA------PYLSNETLPYYKSAYDTDMRKVIDTYAAAQQHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                D+ + + L  +   A   G+K+ YY+R+
Sbjct: 652 DQGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|125717618|ref|YP_001034751.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK36]
 gi|125497535|gb|ABN44201.1| Ribonucleoside-diphosphate reductase, putative [Streptococcus
           sanguinis SK36]
          Length = 719

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSP 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|312869728|ref|ZP_07729875.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094777|gb|EFQ53074.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 723

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 169/713 (23%), Positives = 304/713 (42%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +  +    +   L   +      + ++   + +    F L  L + LK  +D
Sbjct: 35  EALADFIAQNVRPNTKQFASLTDRFQWLEDNDYIEEGFVDKYSPAF-LTKLYDYLK-AQD 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  +     + + +  RVAM         E+ A++  + +   
Sbjct: 93  FHFHSFMAAYKFYAQYALRTDDKEYYL-ENYIDRVAMNALYLADGDEELAMDLADEIIHQ 151

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V ++A   LFSP +V  ++       +I  E Y+  
Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEKDADMYLFSPYDVERIYGKPFSYVDITKE-YDNL 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+  +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRAN--PIDGKIVMSNLCSEI 387

Query: 589 TLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                  + A             CNLGS N+      N  D      ++R  +R L ++ 
Sbjct: 388 AQVQVPSKVADDQSYETLGTDISCNLGSTNIA-----NMMDSPDFGRSVRAMMRGLTHIS 442

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   K+ N    ++GLG MG  S L   HI Y SP A+E        +++ ++
Sbjct: 443 DVENLTVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLNYWSL 502

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDS----IGLLAEVRDEL--AMNRTSRLPWDE 748
            AS E+A+E +  + +F  S +  G +         G  ++V  +L   +       W  
Sbjct: 503 VASNEIAKERQETFHNFDKSSYADGSYFDKYTTKDWGPQSDVVKDLFHGIFIPGPADWAA 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK++V   G+ N   +A+AP  + + I   + S+ P    +  +                
Sbjct: 563 LKEKVMQDGLYNEYRLAVAPNGSTSYINDSTASLTPIINRVEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E MI  + Y          + +D    + +A++ID   +I++ +  Q+ +D
Sbjct: 608 ---------EKMIGKIYYPA------PYLSNDTMPYYRSAYDIDMRKVIDTYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ SL L++                ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 QSMSLTLFMRSTIPEGLYEWKNGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|262184724|ref|ZP_06044145.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 731

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/710 (23%), Positives = 296/710 (41%), Gaps = 91/710 (12%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------------AF-EY 295
            Y+   V  R+         L +L ++  YERDF                      F  +
Sbjct: 60  DYVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTF 119

Query: 296 LGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    +  Y L   +GSR +E  +    RVA          E+ A +  + + +  F  
Sbjct: 120 LGAFKFFTSYALKTFDGSRFLEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQP 176

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA
Sbjct: 177 ATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGA 236

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 237 PIKKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADE 296

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+      
Sbjct: 297 KVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANP 355

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
            I     I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI    
Sbjct: 356 RIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVN 412

Query: 591 ----------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
                      ++  +   CNLGS+N+        F+      T+ TAVR L  V D  N
Sbjct: 413 TPSTYGASGDYTTVGQDISCNLGSLNIA-----KAFESPDFGETVETAVRALTKVSDLTN 467

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS 
Sbjct: 468 IEAVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASH 527

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELK 750
            LA E+   ++ F+ S +  G +    I            ++  E  +    R  W  LK
Sbjct: 528 ALAVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLK 587

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +V   G+ N+   A+ PT +I+ I   + SI P    + ++                  
Sbjct: 588 NQVMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRK----------------- 630

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + +D  +    ++ +    +I++ +   + +DQ 
Sbjct: 631 -------EGRLGRVYYPA------PEMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQG 677

Query: 871 QSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+    +  + ++     AW  G+KT YY+R R +  ++ + ++G 
Sbjct: 678 LSLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLRQSA-LQGTEVEGC 726


>gi|317121176|ref|YP_004101179.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
 gi|315591156|gb|ADU50452.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
          Length = 881

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 157/622 (25%), Positives = 263/622 (42%), Gaps = 92/622 (14%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCST 355
           +  DRY     +G  +E  P+  + RVA  +A  E    +E     F   L  F F+   
Sbjct: 10  VFLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPGQREVWERRFRQALEGFKFVPGG 69

Query: 356 PTLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT +     +C++   P D   GI   +     +    GG+G + + +R  G +
Sbjct: 70  RILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTY 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D 
Sbjct: 130 VRGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DL 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  + N +  I D FM+ V Q+  W L                             +  
Sbjct: 186 TKITNANLSVCISDAFMEAVQQDLPWDL-----------------------------KWN 216

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C E  L   
Sbjct: 217 GKVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCGEQPLGPW 276

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNLG+INL A     + D + L  T+  AVR LDNVID   +   + +K    +
Sbjct: 277 ----GVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEK-AQRY 331

Query: 654 --RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG MG    L  L I Y S +A E+ D+    I   A   S  LA+E+GA+  F
Sbjct: 332 GVRRIGLGTMGLADMLIKLRIRYGSEKAFEVCDQVYRLIRDEAYRTSALLAKEKGAFPWF 391

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
               + QG F                     RLP +++++ +   G+RN   +  APT T
Sbjct: 392 DKEKYLQGWF-------------------IQRLP-EDIRQLIAQHGIRNGFLLTQAPTGT 431

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + + GVS  I+P +   + +++ +G                          + YH+   
Sbjct: 432 TSLLAGVSSGIEPVFAFSFKRTDRTGT------------------------HIVYHELYK 467

Query: 832 GNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
             +E+ PD+ +     +A ++ P   +   +  Q+++D + S  +    E +  ++  +Y
Sbjct: 468 EWLEKHPDEPVPDYFVSADQLTPEEHVRMQAIIQQYVDASISKTVNAPREHTVDQVRTLY 527

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
           R A+ +G K   Y R  S   V
Sbjct: 528 RLAYELGCKGITYYRDGSREGV 549


>gi|227833717|ref|YP_002835424.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454733|gb|ACP33486.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 744

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/710 (23%), Positives = 296/710 (41%), Gaps = 91/710 (12%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------------AF-EY 295
            Y+   V  R+         L +L ++  YERDF                      F  +
Sbjct: 73  DYVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRAKHQFRTF 132

Query: 296 LGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    +  Y L   +GSR +E  +    RVA          E+ A +  + + +  F  
Sbjct: 133 LGAFKFFTSYALKTFDGSRFLEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQP 189

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA
Sbjct: 190 ATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGA 249

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 250 PIKKIENQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADE 309

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+      
Sbjct: 310 KVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMSIT-EYYDELVANP 368

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
            I     I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI    
Sbjct: 369 RIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVN 425

Query: 591 ----------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
                      ++  +   CNLGS+N+        F+      T+ TAVR L  V D  N
Sbjct: 426 TPSTYGASGDYTTVGQDISCNLGSLNIA-----KAFESPDFGETVETAVRALTKVSDLTN 480

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS 
Sbjct: 481 IEAVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASH 540

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELK 750
            LA E+   ++ F+ S +  G +    I            ++  E  +    R  W  LK
Sbjct: 541 ALAVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLK 600

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +V   G+ N+   A+ PT +I+ I   + SI P    + ++                  
Sbjct: 601 NQVMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRK----------------- 643

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + +D  +    ++ +    +I++ +   + +DQ 
Sbjct: 644 -------EGRLGRVYYPA------PEMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQG 690

Query: 871 QSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+    +  + ++     AW  G+KT YY+R R +  ++ + ++G 
Sbjct: 691 LSLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLRQSA-LQGTEVEGC 739


>gi|304373443|ref|YP_003856652.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|304309634|gb|ADM22114.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|330723640|gb|AEC46010.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis MCLD]
          Length = 721

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/774 (23%), Positives = 317/774 (40%), Gaps = 107/774 (13%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR------YIEEGVKARL 268
            Y  + A+  L    +E      +       H ++  Y ++          IE       
Sbjct: 18  EYITLNAKSKLFLKYKESYKFDQQAADSYIKHHIEPRYRKFNSVRERITWLIENDYYDEK 77

Query: 269 LHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVA 325
           +       +L  L  +  Y+    F  ++G    Y  Y L  N     +E  Q   +  A
Sbjct: 78  VINEYTFEELEKLTQE-AYKYKHHFPSFMGALKFYSSYALKSNDSQEYLEHFQERALLNA 136

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           + LA   +E+    +    L     F  +TPT  N+G     +  SC+L  + D++  I 
Sbjct: 137 LFLAKGNSERASSILRQIML---GRFQPATPTFLNAGKKNRGEYVSCYLIRIEDNMESIS 193

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R +GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 194 RAVTTSLQLSKRGGGVSILLSNLREMGAPIKKIENQATGVIPVMKILEDSFSYANQLGQR 253

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFS 
Sbjct: 254 QGAGAVYLNVHHPDILSFLDTKRENADEKIRIKSLSLGVVIPDITFELAKDNKDMALFSV 313

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V   +     +  I  E Y+   +    K F  I+A  L+  +  + FE+G+P+I F 
Sbjct: 314 YDVEREYKKAFSDISITQEYYKMLENPNIKKNF--INARKLFTTIAELHFESGYPYILFD 371

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFA 612
           D  N R+  ++   +  SNLC+EI   S+  E               CNLGS+N+     
Sbjct: 372 DTVNRRNAHKN--RIVMSNLCSEIVQPSTPSEYLPDLTFTKKGEDICCNLGSLNIDKAME 429

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           + +    +    +  A+  LD+V   +   +    +  N+ + A+GLG M     L   H
Sbjct: 430 SGK----EFGELVYQAIVSLDHVSRTSDLSSAPSIENGNNKNHAVGLGAMNLHGFLATNH 485

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     +++HA  +S  LAQ+ GA+  FK S +  G +          
Sbjct: 486 IYYDSKEALDFTNIFFYTMAYHAFKSSSILAQKFGAFEHFKESKFADGSYFDKYTKVSEK 545

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + EV ++  +   ++  W EL + +K +G+ NS+ MA+APT +I+ +   + 
Sbjct: 546 EYQPKTQKIKEVFEKYQVTIPTKQDWIELVENIKRVGIANSHLMAVAPTGSISYLSSCTP 605

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    +  +         V ++ +N+                             ++
Sbjct: 606 SLQPVVAPVETRKEGKIGRVYVPAYKMNQ-----------------------------EN 636

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKT 899
           +K     A+E+ P  +I+ A+  QK IDQ+ SL L+  D  + + L+  Y +A+  G  +
Sbjct: 637 MKFYSLGAYELGPDPIIDIAAEAQKHIDQSISLTLFLKDTATTRDLNKAYIRAFKKGCGS 696

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YY+R R      +  L+  +                         +  ECE C
Sbjct: 697 IYYVRIR------QEVLEDSE-------------------------NYDECEAC 719


>gi|162147607|ref|YP_001602068.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542239|ref|YP_002274468.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786184|emb|CAP55766.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529916|gb|ACI49853.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 665

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/684 (30%), Positives = 306/684 (44%), Gaps = 103/684 (15%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            RD      G   L +RY L       E  Q  F RV+             A   Y+ +S
Sbjct: 68  SRDALLTPFGKATLDNRYLLEG-----ESYQDLFGRVSSYYGA----DPGHAQRLYDYMS 118

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +
Sbjct: 119 RHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYWGNL 178

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++LR+
Sbjct: 179 RSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIELRR 237

Query: 468 NTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            TG D  R+  +++    + D FM+ V ++  W L SP + +                  
Sbjct: 238 PTGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPKDGAH----------------- 280

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSN 583
                      RKISA +LW ++LT   E G P+I + D  N   P+ H      V +SN
Sbjct: 281 ----------IRKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVKTSN 330

Query: 584 LCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV--- 635
           LC EITL +  +      TAVC L S+NL         ++      I   +  LDNV   
Sbjct: 331 LCAEITLPTGMDHHGNERTAVCCLSSLNL-----ETWDEWKDDPRFIEDVMLFLDNVLQD 385

Query: 636 -IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID     +E+AK +    R++GLG+MGF S L   +IP+ S  A        + I   A
Sbjct: 386 FIDRAPDDMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQA 445

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA+ RG                                                
Sbjct: 446 DLASRKLAELRGPCP------------------------------------------DAA 463

Query: 755 TIGM--RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
             G   R SN +AIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L+  L 
Sbjct: 464 EYGFMERFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLLKLLI 523

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +    E + S +    GS+ +++ +    K +  TAFE+D  W++E A+ R  +I QAQ
Sbjct: 524 DKGQNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRAGYICQAQ 583

Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S+NL+L     K  L  I+  AW  G+K+ YY RS S    +  T+  V GK++ +    
Sbjct: 584 SINLFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRAD--TVSNVLGKVDVMADEP 641

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
              +      P+S  +  EC  CQ
Sbjct: 642 SAPAPAPASPPASSNNYDECLACQ 665


>gi|161508075|ref|YP_001578042.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus DPC 4571]
 gi|160349064|gb|ABX27738.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 729

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/717 (24%), Positives = 312/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 39  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 96

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 97  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 153

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 154 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 213

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 214 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 273

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 274 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY- 332

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +            ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 333 -QNLLNNPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 391

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL S +  +V+ L+
Sbjct: 392 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVSDSVQALN 447

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        KK N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 448 RVARSSDLDCAPSIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 507

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA++ GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 508 HAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKE 567

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +   +     V +
Sbjct: 568 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEAALGRIYVPA 627

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 628 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 658

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 659 KYVDQSISLTLFLEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 715


>gi|325688331|gb|EGD30350.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK72]
          Length = 719

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|260206384|ref|ZP_05773875.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis K85]
          Length = 751

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/669 (25%), Positives = 279/669 (41%), Gaps = 72/669 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DF--IYRQA 892
           +   IYR A
Sbjct: 656 NKAQIYRLA 664


>gi|300214874|gb|ADJ79290.1| Ribonucleoside-diphosphate reductase [Lactobacillus salivarius CECT
           5713]
          Length = 723

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/714 (23%), Positives = 297/714 (41%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +  K    +   +             +   + +   +F +  L + LK E 
Sbjct: 34  KEALEAFLNENVKPNTKQFSSIKERINYLIQNNYYEEEFISKYSFEF-IEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 330 MVANPNIPK-KVIKARDLEEQISKLQQESGYPYVINIDTANRVN--PISGKIVMSNLCSE 386

Query: 588 I-------TLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I        +N+  E         CNLGS N++   A+  F       ++    R L  V
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNF-----GKSVEVMTRALTFV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   +  N     IGLG MG  + L    I Y SPEA+E        +++  
Sbjct: 442 TDKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLARNQIEYGSPEALEFTSVYFMLLNYWT 501

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           + AS ++A+ER   + +F+ S +  G +    +      ++         +   ++  W 
Sbjct: 502 LVASNKIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIPTKSDWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +               
Sbjct: 562 SLKENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y          + ++    + +A++ D   +I++ +  Q+ +
Sbjct: 608 ----------ERKIGKIYYPA------PYLSNETLPYYKSAYDTDMRKVIDTYAAAQQHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                D+ + + L  +   A   G+K+ YY+R+
Sbjct: 652 DQGMSLTLFMRSTIPTGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|329888547|ref|ZP_08267145.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
 gi|328847103|gb|EGF96665.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
          Length = 599

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/684 (31%), Positives = 310/684 (45%), Gaps = 104/684 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G + L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 6   LDRTRDALLTEFGKKTLEDRYLLAG-----ESYQDMFARVATAYA----DDADHAQRVYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL +V D L GI     EN  LA   GG+G  W
Sbjct: 57  YMSKLWFMPATPVLSNGGADRGLPISCFLNSVNDSLDGIQNVWNENVSLASNGGGIGTYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 117 GGVRSIGEKVK-GAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 175

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  RR+ +++    I D FM+ V     + L SP                    
Sbjct: 176 IRKPSGDFNRRSLNLHHGINITDAFMEAVRDGKPFDLISPKNGE---------------- 219

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHS 581
                      V + + A  LW K+L +  +TG P++ F D  N + PQ    +   V  
Sbjct: 220 -----------VRKTVDARNLWTKILEIRMQTGEPYLIFSDTVNRQMPQHQKDLGLSVKQ 268

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC+EI L++  +      TAVC L S+N     A    ++ +    I   +R LDNV+
Sbjct: 269 SNLCSEIMLHTGLDHKGVERTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFLDNVL 323

Query: 637 DINCHTIE----KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +            A  S    R++GLGLMGF S L    + + S  A        + +  
Sbjct: 324 EDFITRAPSSMAAAVYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRR 383

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS  LA+E+G          D+GV                                
Sbjct: 384 EADKASRTLAEEKGPCPD----AADRGVME------------------------------ 409

Query: 753 VKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L + L 
Sbjct: 410 ------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLQDLLG 463

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ +  EA+ S +  ++GS+ +++ + DD K I+ TAFE+D  W+IE A+ R   I QAQ
Sbjct: 464 EKGIDTEAVWSSILENEGSVQHLDALSDDEKAIYKTAFELDQRWVIELAADRTGDICQAQ 523

Query: 872 SLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           SLNL++     K  L  ++  AW  GLK+ YYLRS+S   V+++   G + K       D
Sbjct: 524 SLNLFIPGDVNKWDLHMLHWSAWERGLKSLYYLRSKS---VQRAAFAGAEDKKEEE--ID 578

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
           PN          + T   EC  CQ
Sbjct: 579 PNQPDLFSI---ARTDYDECLACQ 599


>gi|311741269|ref|ZP_07715093.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303439|gb|EFQ79518.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 731

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/710 (23%), Positives = 295/710 (41%), Gaps = 91/710 (12%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------------AF-EY 295
            Y+   V  R+         L +L ++  YERDF                      F  +
Sbjct: 60  DYVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTF 119

Query: 296 LGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    +  Y L   +GSR +E  +    RVA          E+ A +  + + +  F  
Sbjct: 120 LGAFKFFTSYALKTFDGSRFLEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQP 176

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  ++ SCFL  + D+L  I   +     L+K  GG+    + +R  GA
Sbjct: 177 ATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGA 236

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 237 PIKKIENQASGVVPVMKILEDSFSYANQLGSRQGAGAVYLHAHHPDILRFLDTKRENADE 296

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+      
Sbjct: 297 KVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANP 355

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
            I     I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI    
Sbjct: 356 RIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVN 412

Query: 591 ----------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
                      ++  +   CNLGS+N+        F+      T+ TAVR L  V D  N
Sbjct: 413 TPSTYGASGDYTTVGQDISCNLGSLNIA-----KAFESPDFGETVETAVRALTKVSDLTN 467

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS 
Sbjct: 468 IEAVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASH 527

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELK 750
            LA E+   ++ F+ S +  G +    I            ++  E  +    R  W  LK
Sbjct: 528 ALAVEKGQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLK 587

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +V   G+ N+   A+ PT +I+ I   + SI P    + ++                  
Sbjct: 588 NQVMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRK----------------- 630

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + +D  +    ++ +    +I++ +   + +DQ 
Sbjct: 631 -------EGRLGRVYYPA------PEMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQG 677

Query: 871 QSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+    +  + ++     AW  G+KT YY+R R +  ++ + ++G 
Sbjct: 678 LSLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLRQSA-LQGTEVEGC 726


>gi|317482332|ref|ZP_07941352.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916212|gb|EFV37614.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 731

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/755 (22%), Positives = 295/755 (39%), Gaps = 81/755 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L          + +     Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNIKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI 314
               I        +        L      ++    F F  +LG    Y  Y L     R+
Sbjct: 75  LDYLISNQYYNPDVFAQYSAEFLDRFYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRL 133

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
            + + F  R A          E +A E+ + + +  F  +TPT  N G  +  +  SCFL
Sbjct: 134 YL-EDFPQRCAAVALELAAGNEAQATEYVDEMLAGRFQPATPTFLNLGKAQRGEPVSCFL 192

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D
Sbjct: 193 VRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPIMKLLED 252

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +  
Sbjct: 253 SFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELA 312

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            Q A   LFSP +V  ++     +  +  E+Y+      +      I A   +  +  + 
Sbjct: 313 KQKAQMALFSPYDVERVYGKPFADISVT-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N  +     G V  SNLC+EI                       CN
Sbjct: 371 FESGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCN 428

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+             LA T+ TA+R L +V +    + +   +++N    AIGLG 
Sbjct: 429 LGSLNIAKTMDGG------LAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQ 482

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD-- 717
           M     L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S +   
Sbjct: 483 MNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKP 542

Query: 718 --QGVFPIDSIG----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             QG +                 +  + ++  +   +   W+ L+  +   G+ N N  A
Sbjct: 543 AGQGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQA 602

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 603 VPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVY 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D    +  A+EI    ++++ +   + +DQ  SL L+  D  + + 
Sbjct: 639 YPAA------YMTNDNLGYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+     AW  G+KT YY+R R   ++E + ++G 
Sbjct: 693 LNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|332361650|gb|EGJ39454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1056]
          Length = 719

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSS 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWVELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|224283651|ref|ZP_03646973.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 698

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/722 (24%), Positives = 290/722 (40%), Gaps = 78/722 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E        +L     +   
Sbjct: 17  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPE---FLDGFYAHAES 73

Query: 291 --FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
             F F  +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + 
Sbjct: 74  SGFEFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEML 132

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + 
Sbjct: 133 SGAFQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSN 192

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 193 LRELGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTK 252

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   + A   LFSP +   ++     +  +     E
Sbjct: 253 RENADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSPYDAERVYGKPFADISVTEHYDE 312

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    K +  I A   +  +  + FE+G+P+I F+D  N  +     G +  SNLC+
Sbjct: 313 MVADDRIRKTY--IDAREFFTTLAEIQFESGYPYIVFEDTVNRAN--PIAGRITMSNLCS 368

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               S       CNLGS+N+             LA T+ TA+R L +
Sbjct: 369 EILQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTS 422

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V +      +   +++N    AIGLG M     L    I Y S EA++  D     +++H
Sbjct: 423 VSEHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYH 482

Query: 694 AISASVELAQERGA-YSSFKGSLWDQ----GVFPIDSIG----------LLAEVRDELAM 738
           A  AS  LA E G  +  F  S + +    G +                L+  + +   +
Sbjct: 483 AYRASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGV 542

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++      
Sbjct: 543 AIPTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK----- 597

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  +  + Y          + ++  + +  A+EI    +++
Sbjct: 598 -------------------EGKLGRVYYPAA------YMTNENLEYYKDAYEIGWKAIVD 632

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 633 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 691

Query: 918 GV 919
           G 
Sbjct: 692 GC 693


>gi|325697178|gb|EGD39065.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK160]
          Length = 719

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFAKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|327468919|gb|EGF14391.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK330]
          Length = 719

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|325694008|gb|EGD35926.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK150]
          Length = 719

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVLNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|326803226|ref|YP_004321044.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650452|gb|AEA00635.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 732

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/759 (23%), Positives = 319/759 (42%), Gaps = 76/759 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           A     +  +E +    +   +A       L  +    +     +  +  +   DF +  
Sbjct: 22  AGHYNFQADKEAVAVYMRDYIQAKTKTFANLDSKLDYLFENNYYEKEVFDQYSKDF-IHE 80

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEK 337
           +      ++DFAF   +G    Y  Y L  +      E  +   +  A+ LA  + +   
Sbjct: 81  IYQWAD-DQDFAFPNLIGAMKFYSAYALKTDDKAYYLETYEDRVIANALFLANGDQD--- 136

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +    + S  F  +TPT  N+   R  +  SC+L  V D++  I  ++  +  L+K 
Sbjct: 137 LAKDLAADILSNRFQPATPTFLNAAKKRRGEYISCYLLRVEDNMESIARSIATSLQLSKR 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R   A I G   ++ GV+P +K+  D+    NQ G+R+GA   YL   H
Sbjct: 197 GGGVALCLTNLRETTAPIKGMANQASGVVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +FLD ++   D++ R   ++    IPD+  +   +N    LFSP ++  ++     
Sbjct: 257 PDILKFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSPYDIKKVYGKAMS 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +  I  +  E  A+    K F  ISA  L++ +  + FE+G+P++ F+D  N R+P +  
Sbjct: 317 DISITEKYDELLANPAIHKDF--ISARKLFQVIAELHFESGYPYLMFEDTVNSRNPHKKK 374

Query: 577 GVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLC+EIT  S+              E   CNLGS+N+                 
Sbjct: 375 GRIVMSNLCSEITQVSTPSSFNEDLSFRTIGEDICCNLGSLNIAKAMDQA----PDFGHL 430

Query: 625 IRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +  A++ LD +   +   +    KK N  + A+GLG M     L   HI Y S EAV+  
Sbjct: 431 VSHAIQALDRISRKSDLESAPSIKKGNQANHAVGLGAMNLHGFLATNHIYYDSEEAVDFT 490

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDE 735
           D     +++HA  +S  L ++ G ++ F  S +  G + +             + ++  +
Sbjct: 491 DMFFYALAYHAFKSSHALVKQHGPFAGFAESEYADGSYFMKYTESRVQPKTERVRQLLKD 550

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   S+  W  L K ++  G+ N++ +A+APT +I+ +   + S+ P    +  +   
Sbjct: 551 YGLQLPSQEDWQALAKAIQEDGIANAHLLAVAPTGSISYLSSCTPSLQPVVSPVETRKEG 610

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 V ++ ++                              D+       A+E+ P  
Sbjct: 611 KLGRVYVPAYQIDN-----------------------------DNYAYYQRGAYEVGPQA 641

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I+  +  QK +DQA SL L++  E + + L+  Y  A+  G  T YY+R R        
Sbjct: 642 IIDIVAAAQKHVDQAISLTLFMSSEATTRDLNRAYIYAYSKGCSTIYYVRVRQDVLAGSE 701

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            L+      + +   DP S   S     SC  ++ECE C
Sbjct: 702 HLES-----DELLSADPTSPDRS-----SCNGNSECESC 730


>gi|51893898|ref|YP_076589.1| ribonucleotide-diphosphate reductase subunit alpha [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857587|dbj|BAD41745.1| ribonucleotide reductase [Symbiobacterium thermophilum IAM 14863]
          Length = 776

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/662 (25%), Positives = 285/662 (43%), Gaps = 100/662 (15%)

Query: 291 FAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE-----TEKEKRAVE--F 342
               ++   ++  RY  +  +G+R E P     RVA  +A  E     ++KE RAVE  F
Sbjct: 1   MELTHIAKTVMEKRYLRMKEDGTR-ETPDEMLRRVARVIAAVEEKYGASKKEIRAVEERF 59

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y L+    FM ++PT   +GT   QLS+CF+  V D L  I+  +++ A++ +  GG G 
Sbjct: 60  YQLMDRQDFMPNSPTFTGAGTALGQLSACFVLPVGDSLPEIYETMKQAALIHQTGGGTGF 119

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  G  +  + G + G + FL+V N +  A+ QGG R+GA    L   H D+ +F
Sbjct: 120 AFSRLRPAGDVVRSSQGVASGPVSFLRVYNASTEAIKQGGTRRGANMGILRVDHPDILQF 179

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           ++ +     D  +  + N +  I D FM+ + +   + L +P                  
Sbjct: 180 IESKA----DITQITNFNISVAITDAFMEALEKGTEYELINP------------------ 217

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       +V  K+SA  +W K++   ++TG P I F D  N R+P  HV V+ ++
Sbjct: 218 ---------RNGEVTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEAT 268

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID 637
           N C E  L         CNLGSINL     N      + D+++L    RTA R LDNVID
Sbjct: 269 NPCGEQPLPPYGS----CNLGSINLANFVKNPYTDRAEVDWERLGEVARTATRFLDNVID 324

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + + +  +     R IGLG+MG+   L  + +PY S EAV + +  M FI   A+  
Sbjct: 325 ANKYPLPQIAEKALRDRRIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEE 384

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LA+ RG Y  ++GS W +                                       
Sbjct: 385 SMALAEVRGPYPEWEGSQWHKAGLK----------------------------------- 409

Query: 758 MRNSNCMAIAPTATIANICG-----VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +RN+    +APT TI+          S  I+P +  ++ ++        V+      + +
Sbjct: 410 VRNATLTTVAPTGTISLFAARPDLPCSGGIEPKFALVFTRNQAGALMLDVDGQF-ASIAR 468

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ-------- 864
           R+ W    +       G+   +  +P+  ++I AT+ +I P W +   +  Q        
Sbjct: 469 REGWYSDELMQQVADRGTARGVSGVPEKWQRIFATSHDITPEWHVRMQAAFQGGDGLPVD 528

Query: 865 -KWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            + +D A S  + +    + + +   Y  AW +GLK     R  S  S   +T      +
Sbjct: 529 QQPVDAAVSKTINFPHHATVEDVGKSYALAWQLGLKGITVYRDGSRASQVLTTGDKTKKQ 588

Query: 923 LN 924
             
Sbjct: 589 EE 590


>gi|324993304|gb|EGC25224.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK405]
 gi|324995392|gb|EGC27304.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK678]
 gi|327461575|gb|EGF07906.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1]
 gi|327473299|gb|EGF18719.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK408]
          Length = 719

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKINYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|322421033|ref|YP_004200256.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320127420|gb|ADW14980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 565

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/635 (25%), Positives = 275/635 (43%), Gaps = 78/635 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNL 345
                   ++L  RY L    G  IE P+  F R+A  +A  E     +       F +L
Sbjct: 1   MELSENARKVLQARYLLKNEEGEVIESPEEMFRRLARSIAAVEKSYGADPGLWEERFLDL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           L+   F+ ++P + N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++
Sbjct: 61  LTGLRFLPNSPAIMNAGKPAGQLAACFVLPVEDSMSGIFETLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ +
Sbjct: 121 RLRPRADLVRSTGGIASGPVSFMKIYNTATDIIKQGGARRGANMGILRVDHPDIVEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K  G+      + N +  + DLFM+ ++++  + L +P                     
Sbjct: 181 KKGAGE----LANFNISVAVTDLFMEELSRDGSYDLVNPRSGK----------------- 219

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V  +  A  ++ +++   +ETG P + F D  N  +P   +G   S+N C
Sbjct: 220 ----------VAGRARAKEVFDEIVASAWETGDPGMIFIDRINRDNPTPGIGSFESTNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGS+NL  +  + + D + L   +  AVR LD+ ID N + +  
Sbjct: 270 GEQPLLPYE----ACVLGSLNLARYVGSGELDLESLGGDVALAVRFLDDTIDANRYPLPA 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +  +  +R IGLG+MG+   L  L IPY  P A  +A   M+FI   A +AS  LA+ER
Sbjct: 326 IEAMHKRNRKIGLGVMGWADLLIDLGIPYNDPRAFALAGSVMQFIRDRARNASAALAEER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +F GS++D    P                                   +RN+    
Sbjct: 386 GVFPNFPGSVYDAPGMPR----------------------------------VRNATTTT 411

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT T+A I   S  I+P +   Y +  + G+    N   +   K+   + E ++  +K
Sbjct: 412 IAPTGTLATIADCSSGIEPLFALAYRRLILEGELVETNRHFIEIAKREGFYSEELLEGVK 471

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKK 884
              G++   E +P+  + +  TA EI P   IE     Q++ D A S  +   +E + + 
Sbjct: 472 V-TGNLQGREEVPERYRALFRTALEIPPEDHIEMQRAFQRFTDNAVSKTVNLPEEATRED 530

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLK 917
           +  ++  A+    K  T +    R  T V  + + 
Sbjct: 531 VARVFLLAYEKECKGVTLFRYGCRPGTLVRFADVD 565


>gi|215447327|ref|ZP_03434079.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T85]
          Length = 699

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/667 (25%), Positives = 276/667 (41%), Gaps = 70/667 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQA 892
           +     A
Sbjct: 656 NKAQIYA 662


>gi|332365966|gb|EGJ43722.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1059]
          Length = 719

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ER G + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGGTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|323467362|gb|ADX71049.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus H10]
          Length = 727

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/717 (24%), Positives = 309/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + +       +     L Y +
Sbjct: 37  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLDLYTP-KFIKEIFKLAYAQ 94

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 95  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 151

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 152 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 211

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 212 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 271

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 272 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY- 330

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +            ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 331 -QNLLNNPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 389

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL   +  +V+ L+
Sbjct: 390 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALN 445

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        KK N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 446 RVARSSDLDCAPSIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 505

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA++ GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 506 HAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKE 565

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 566 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 625

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 626 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 656

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 657 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 713


>gi|315173868|gb|EFU17885.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1346]
          Length = 719

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMKYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|88606797|ref|YP_504939.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           phagocytophilum HZ]
 gi|88597860|gb|ABD43330.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaplasma
           phagocytophilum HZ]
          Length = 603

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/684 (30%), Positives = 311/684 (45%), Gaps = 107/684 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD      G  +L DRY L       E  Q  F+RVA       ++  + A   Y+
Sbjct: 13  IDYTRDDNLTNFGKAVLSDRYLLEK-----EDYQQLFVRVA----QYYSDDSQHAQRLYD 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 64  YMSKLWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 124 GNLRSIGERVR-GSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 183 IRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKD----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVGV-VH 580
                       V   + A  LW K+LT   ETG P+I F D  N   P   + +G+ V 
Sbjct: 226 ----------KCVISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVK 275

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINL---LAHFANNQFDYDKLASTIRTAVRVL 632
            SNLCTEITL +  +      TAVC L S+NL        N QF    +   +R    VL
Sbjct: 276 MSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYYDMWCGNPQF----IEDVMRFLDNVL 331

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + +      +E+A+ S    R+IG+G+MGF S L    +P+ S  A     +   ++  
Sbjct: 332 TDFVQKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFSYLKS 391

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A + S +LA E+GA                          D    N             
Sbjct: 392 QADAVSRKLALEKGACP------------------------DAQDANEME---------- 417

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 R  + +++APTA+I+ I G +   I+P   N++    ++G F V N FL   LK
Sbjct: 418 ------RFVHKLSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLK 471

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +   D+ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +  R  +I QAQ
Sbjct: 472 SKGKDDDQVWSSISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQ 531

Query: 872 SLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S+N++L     K+ L  ++  AW  GLK+ YY+RS+S    +K + + V+G    VP   
Sbjct: 532 SVNIFLPAGVHKRYLHKVHFLAWKKGLKSLYYMRSKSVQRADKVSHE-VNGAAAVVPRKQ 590

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             +            S  EC  CQ
Sbjct: 591 LTNF-----------SYDECLSCQ 603


>gi|289759176|ref|ZP_06518554.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
 gi|289714740|gb|EFD78752.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
          Length = 693

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/667 (25%), Positives = 276/667 (41%), Gaps = 70/667 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + +
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDV 655

Query: 886 DFIYRQA 892
           +     A
Sbjct: 656 NKAQIYA 662


>gi|238852994|ref|ZP_04643392.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
 gi|238834389|gb|EEQ26628.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
          Length = 722

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/717 (24%), Positives = 309/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFVSL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQVLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGRKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 207 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 267 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY- 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +            ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 326 -QNILNNPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 384

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL   +  +++ L+
Sbjct: 385 SEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSIQALN 440

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 441 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 500

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA+  GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 501 HAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKE 560

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 561 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 620

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 621 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 651

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 652 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|313140806|ref|ZP_07802999.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133316|gb|EFR50933.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
          Length = 731

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/722 (24%), Positives = 290/722 (40%), Gaps = 78/722 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E        +L     +   
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPE---FLDGFYAHAES 106

Query: 291 --FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
             F F  +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + 
Sbjct: 107 SGFEFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEML 165

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + 
Sbjct: 166 SGAFQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSN 225

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 226 LRELGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTK 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   + A   LFSP +   ++     +  +     E
Sbjct: 286 RENADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSPYDAERVYGKPFADISVTEHYDE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    K +  I A   +  +  + FE+G+P+I F+D  N  +     G +  SNLC+
Sbjct: 346 MVADDRIRKTY--IDAREFFTTLAEIQFESGYPYIVFEDTVNRAN--PIAGRITMSNLCS 401

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               S       CNLGS+N+             LA T+ TA+R L +
Sbjct: 402 EILQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTS 455

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V +      +   +++N    AIGLG M     L    I Y S EA++  D     +++H
Sbjct: 456 VSEHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYH 515

Query: 694 AISASVELAQERGA-YSSFKGSLWDQ----GVFPIDSIG----------LLAEVRDELAM 738
           A  AS  LA E G  +  F  S + +    G +                L+  + +   +
Sbjct: 516 AYRASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGV 575

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++      
Sbjct: 576 AIPTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK----- 630

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  +  + Y          + ++  + +  A+EI    +++
Sbjct: 631 -------------------EGKLGRVYYPAA------YMTNENLEYYKDAYEIGWKAIVD 665

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724

Query: 918 GV 919
           G 
Sbjct: 725 GC 726


>gi|255325477|ref|ZP_05366579.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255297415|gb|EET76730.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 731

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/710 (23%), Positives = 294/710 (41%), Gaps = 91/710 (12%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF---------------------AF-EY 295
            Y+   V  R+         L +L ++  YERDF                      F  +
Sbjct: 60  DYVTHHVAPRMHQFDSTKQRLEWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTF 119

Query: 296 LGLQILYDRYFLHI-NGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    +  Y L   +GSR +E  +    RVA          E+ A +  + + +  F  
Sbjct: 120 LGAFKFFTSYALKTFDGSRFLEGYEE---RVATTALYLAQGDEELAEKLVDGIMTGRFQP 176

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  ++ SCFL  + D+L  I   +     L+K  GG+    + +R  GA
Sbjct: 177 ATPTFLNAGKAQRGEMVSCFLLRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGA 236

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 237 PIKKIENQASGVVPVMKILEDSFSYANQLGSRQGAGSVYLHAHHPDILRFLDTKRENADE 296

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP +++  + +   +  I  E Y+      
Sbjct: 297 KVRIKTLSLGVVIPDITFRLAKENKDMHLFSPYDIAREYGVAMSDMSIT-EYYDELVANP 355

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
            I     I A   +  +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI    
Sbjct: 356 RIS-HTTIKAREFFTTLAELQFESGYPYILFEDTVNRANPLK--GHINMSNLCSEILQVN 412

Query: 591 ----------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
                      ++  +   CNLGS+N+        F+      T+ TAVR L  V D  N
Sbjct: 413 TPSTYGASGDYTTVGQDISCNLGSLNIA-----KAFESPDFGETVETAVRALTKVSDLTN 467

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS 
Sbjct: 468 IEAVPSIAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASH 527

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELK 750
            LA E+   ++ F+ S +  G +    I            ++  E  +    R  W  LK
Sbjct: 528 ALAVEKGQRFTGFEESTYATGAYFDKYIDQDWAPTTEHVKQLFHEAGVQIPQREDWLRLK 587

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   G+ N+   A+ PT +I+ I   + SI P    + ++                  
Sbjct: 588 NLVMQDGIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRK----------------- 630

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  + Y          + +D  +    ++ +    +I++ +   + +DQ 
Sbjct: 631 -------EGRLGRVYYPA------PEMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQG 677

Query: 871 QSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+    +  + ++     AW  G+KT YY+R R +  ++ + ++G 
Sbjct: 678 LSLTLFFTADTTTRDINKAQIYAWKAGIKTLYYIRLRQSA-LQGTEVEGC 726


>gi|256963239|ref|ZP_05567410.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|307272282|ref|ZP_07553542.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|312952107|ref|ZP_07770988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|256953735|gb|EEU70367.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|306511171|gb|EFM80181.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|310629889|gb|EFQ13172.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|315153941|gb|EFT97957.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0031]
          Length = 719

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKNGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|260102936|ref|ZP_05753173.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|260083262|gb|EEW67382.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 722

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/717 (24%), Positives = 313/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 207 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 267 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQ 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +    K F  I+A   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 327 NLLNNPRIKKTF--INARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 384

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL S +  +V+ L+
Sbjct: 385 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVSDSVQALN 440

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        KK N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 441 RVARSSDLDCAPSIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 500

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA++ GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 501 HAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKE 560

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 561 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 620

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 621 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 651

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 652 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 708


>gi|327489433|gb|EGF21226.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1058]
          Length = 719

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/716 (23%), Positives = 290/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     +EE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLLEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ER   + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERRVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|229547641|ref|ZP_04436366.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255973537|ref|ZP_05424123.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256761392|ref|ZP_05501972.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852444|ref|ZP_05557820.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|307282793|ref|ZP_07562993.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|312900213|ref|ZP_07759525.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|229307133|gb|EEN73120.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255966409|gb|EET97031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256682643|gb|EEU22338.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712298|gb|EEU27330.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|306503649|gb|EFM72880.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|311292574|gb|EFQ71130.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|315028519|gb|EFT40451.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4000]
 gi|315167730|gb|EFU11747.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1341]
          Length = 719

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIKKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|50913720|ref|YP_059692.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50902794|gb|AAT86509.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 726

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/759 (25%), Positives = 326/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKDAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKC 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA  L++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKLFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG+M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     +++HA  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|323352632|ref|ZP_08087602.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
 gi|322121668|gb|EFX93414.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
          Length = 719

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELAHKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIIMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFASIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|270291188|ref|ZP_06197411.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
 gi|270280584|gb|EFA26419.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
          Length = 721

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/718 (23%), Positives = 308/718 (42%), Gaps = 82/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L    K+  +A   +   L   +     E+ ++A L+ +   DF +  L + L
Sbjct: 28  LHKDQEALAAFLKENVQANTKQFTSLRERFDYLLEEDYIEAELVEKYSFDF-IEKLYDYL 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  ++F F  ++     Y +Y L  N +   + + F  RVAM         E+ A++  +
Sbjct: 87  R-AQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIAD 144

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL    DD+  I   +     L+K  GG+G +
Sbjct: 145 EIIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGIN 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LTNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F + +  +    LFSP  V  ++       +I  E
Sbjct: 265 SAKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGKPYAYVDITKE 324

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+   +  EIK ++ + A  +  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 325 -YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANREN--PIYGKIVMSN 380

Query: 584 LCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI               +       CNLGS N++   A   F       ++ T VR 
Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +   +  N     IGLG MG    L   H+ Y  P++VE        +
Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL-----AEVRDEL-AMNRTSR 743
           ++  + AS ++A+ER   + +F+ S +  G +    +        A V++    ++  + 
Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +LK+ V   G+ + N MA+APT +I+ I   + S+ P    +  +           
Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  K + +A++ID   +++  +  
Sbjct: 606 --------------EKKIGKIYYPA------PYLSNDTLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|315497332|ref|YP_004086136.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
 gi|315415344|gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
          Length = 625

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/683 (30%), Positives = 310/683 (45%), Gaps = 110/683 (16%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              +D      G + L DRY L       E  Q  F RVA   A    +  + A   YN 
Sbjct: 39  DPSKDDKLTEFGKKTLDDRYLLAG-----ETYQDMFARVATAYA----DDSEHAQRIYNY 89

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N G +     SCFL  VPD L GI     EN  LA   GG+G  W 
Sbjct: 90  ISNLWFMPATPVLSNGGAKRGLPISCFLNAVPDSLEGIVSVWNENVALASNGGGIGTYWG 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   Y++ +H ++EEFL++
Sbjct: 150 GVRSIGEKVK-GAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYIDIFHPEIEEFLEI 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    I D FM+ V   A + L SP                     
Sbjct: 209 RKPSGDFNRKALNLHHGISITDEFMEAVRDGAQFGLRSPK-------------------- 248

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-VVHSS 582
                    ++ R + A ALW+K+L +  +TG P++ F D  N      Q+ +G  V  S
Sbjct: 249 -------NNEIIRYVDARALWQKILEIRMQTGEPYLIFADTVNRSMAPHQRELGLKVKQS 301

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC EI L++  +      TAVC L S+N     A    ++      I   +R LDNV++
Sbjct: 302 NLCAEIMLHTGKDHLGHERTAVCCLSSVN-----AETFLEWRDEPRFIEDIMRFLDNVLE 356

Query: 638 INCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
               +   A      S    R++GLGLMGF S L    + + S  A        + +   
Sbjct: 357 DFIQSAPDAMSAAIYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRRE 416

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  ASV+LAQERG                                          L    
Sbjct: 417 ADKASVKLAQERGPC----------------------------------------LDAEE 436

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           + +  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N FL   L +
Sbjct: 437 RGVMERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPFLRALLAE 496

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +        +  H+GS+ +I+ + +D K I  TAFEID  W++E A+ R   I Q+QS
Sbjct: 497 KGIDTPETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELAADRAPEICQSQS 556

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN++L     K  L  ++  AW  G+K+ YYLRS+S   V+++   G +GK  AV +   
Sbjct: 557 LNIFLPGDVDKWDLHMLHWTAWEQGVKSLYYLRSKS---VQRAAFAGSEGKAAAVSMAAS 613

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                        T   EC  CQ
Sbjct: 614 GK-----------TDYEECLACQ 625


>gi|312984311|ref|ZP_07791654.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|312984330|ref|ZP_07791673.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894276|gb|EFQ43355.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894295|gb|EFQ43374.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
          Length = 727

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 310/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 37  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 94

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 95  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 151

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 152 ISNRFQPATPTFLNAGKKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 211

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 212 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQILQFLDT 271

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 272 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY- 330

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +            ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 331 -QNLLNNPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 389

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL   +  +V+ L+
Sbjct: 390 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALN 445

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 446 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 505

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA++ GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 506 HAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKE 565

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 566 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 625

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 626 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 656

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 657 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 713


>gi|330814260|ref|YP_004358499.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487355|gb|AEA81760.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 648

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/681 (30%), Positives = 300/681 (44%), Gaps = 99/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY      +  E  Q  F RVA   A    +        YN
Sbjct: 56  IDRSRDSKLTDFGKATLVDRYL-----NEGESYQDLFARVASTYA----DDNLHGQRIYN 106

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N+GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 107 YMSNLWFMPSTPVLSNAGTERGLPISCFLNEASDSLNGIVDLWSENVWLAAKGGGIGSYW 166

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +    GK+ G++PF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 167 GNLRSIGEQVGRV-GKTSGIMPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  RR  +++    + D FM+ V  +  W L SP +                 
Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVELDEQWPLKSPHDG---------------- 269

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVH 580
                       V   +SA  LW ++LT   ETG P+I F D  N   PQ H   G  V 
Sbjct: 270 -----------TVQSSMSARNLWIRLLTARVETGEPYIVFIDTVNRMIPQHHKLAGLTVK 318

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +       + TAVC L S+NL  +    + +   L   ++    VL + 
Sbjct: 319 TSNLCSEITLPTGIDKSGRDRTAVCCLSSLNLETY-DEWKDEKIMLEDIMKFLDNVLTDF 377

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I     +   A  +    R++GLG+MGF S L    IP  S  A    ++  + I     
Sbjct: 378 ITRAPESFSDATYAAMRERSVGLGVMGFHSFLQKNSIPIESVMAKVWNNKMFKQIDKEVN 437

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +ASV+LA+ERG          D G+                                   
Sbjct: 438 AASVKLAEERGPCPD----AADYGIME--------------------------------- 460

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  I+P   N Y    +SG F V N +L   L + +
Sbjct: 461 ---RFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKQILAKYE 517

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GSI ++  + D  K +  TAFEID  WLI+ ++ R  ++ QAQSLN
Sbjct: 518 KDTDEVWSSITTNQGSISHLNFLSDLEKDVFKTAFEIDQRWLIDHSADRTPYVSQAQSLN 577

Query: 875 LYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L      K L  I+ QAW  GLK+ YY RS+S    E          +    V +   
Sbjct: 578 VFLPADVHKKDLHQIHFQAWKKGLKSMYYCRSKSIQRAE----------VINQTVANAAK 627

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
           +  +        +  EC  CQ
Sbjct: 628 NQPAEASNGEAANYEECLSCQ 648


>gi|327458664|gb|EGF05012.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1057]
 gi|332363058|gb|EGJ40845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK355]
          Length = 719

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/712 (24%), Positives = 290/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  E     IEE    +   +      +  L   + + +
Sbjct: 32  KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFI-HAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S EAVE        +++  
Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S   W 
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSAEDWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|311064960|ref|YP_003971686.1| ribonucleoside-diphosphate reductase subunit alpha NrdE
           [Bifidobacterium bifidum PRL2010]
 gi|310867280|gb|ADP36649.1| NrdE Ribonucleoside-diphosphate reductase alpha chain
           [Bifidobacterium bifidum PRL2010]
          Length = 731

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/722 (24%), Positives = 291/722 (40%), Gaps = 78/722 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E        +L +   +   
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPE---FLDDFYAHAES 106

Query: 291 --FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
             F F  +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + 
Sbjct: 107 SGFEFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEML 165

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + 
Sbjct: 166 SGAFQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSN 225

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 226 LRELGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTK 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   + A   LFSP +   ++     +  +     E
Sbjct: 286 RENADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSPYDAERVYGKPFADISVTEHYDE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    K +  I A   +  +  + FE+G+P+I F+D  N  +     G +  SNLC+
Sbjct: 346 MVADDRIRKTY--IDAREFFTTLAEIQFESGYPYIVFEDTVNRAN--PIAGRITMSNLCS 401

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               S       CNLGS+N+             LA T+ TA+R L +
Sbjct: 402 EILQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTS 455

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V +      +   +++N    AIGLG M     L    I Y S EA++  D     +++H
Sbjct: 456 VSEHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYH 515

Query: 694 AISASVELAQERGA-YSSFKGSLWDQ----GVFPIDSIG----------LLAEVRDELAM 738
           A  AS  LA E G  +  F  S + +    G +                L+  + +   +
Sbjct: 516 AYRASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGV 575

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++      
Sbjct: 576 AIPTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK----- 630

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  +  + Y          + ++  + +  A+EI    +++
Sbjct: 631 -------------------EGKLGRVYYPAA------YMTNENLEYYKDAYEIGWKAIVD 665

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724

Query: 918 GV 919
           G 
Sbjct: 725 GC 726


>gi|55821275|ref|YP_139717.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMG 18311]
 gi|55823188|ref|YP_141629.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus CNRZ1066]
 gi|116628013|ref|YP_820632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMD-9]
 gi|55737260|gb|AAV60902.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           LMG 18311]
 gi|55739173|gb|AAV62814.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           CNRZ1066]
 gi|116101290|gb|ABJ66436.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278605|gb|ADQ63262.1| Ribonucleoside-diphosphate reductase [Streptococcus thermophilus
           ND03]
          Length = 719

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 289/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +       + +++  +     +   +   +   + +
Sbjct: 32  KEALRAFFLENVKPNSMAFNSITDKINYLIENDYIESEFI--GKYEPAFIEKLSAEIHAQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ ++     Y +Y L  N     + ++F  RV           E  A +  N +  
Sbjct: 90  KFRFQSFMAAYKFYQQYALKTNDGETYL-ESFEDRVLFNALYFADGDENLASDLANEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   +       +I     E 
Sbjct: 269 ENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSIEKEYGKPYNYIDITAMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPNI--TKTKINARELETEISKLQQESGYPYIINIDTANRHN--PIDGKIVMSNLCSE 384

Query: 588 ITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +  E               CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSELNDSQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  +     +++  
Sbjct: 440 TDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESIEFTNIYFMLMNYWT 499

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+E +  +  F+ S +  G +         +     V++            W+
Sbjct: 500 LVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRVKELFEGHFIPQAKDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPKEIYEWKTENKLTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|304385473|ref|ZP_07367818.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
 gi|304328680|gb|EFL95901.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
          Length = 721

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/718 (23%), Positives = 308/718 (42%), Gaps = 82/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L    K+  +A   +   L   +     E+ ++A L+ +   DF +  L + L
Sbjct: 28  LHKDQEALAAFLKENVQANTKQFASLRERFDYLLEEDYIEAELMEKYSFDF-IEKLYDYL 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  ++F F  ++     Y +Y L  N +   + + F  RVAM         E+ A++  +
Sbjct: 87  R-AQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIAD 144

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL    DD+  I   +     L+K  GG+G +
Sbjct: 145 EIIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGIN 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LTNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F + +  +    LFSP  V  ++       +I  E
Sbjct: 265 SAKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGKPYAYVDITKE 324

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+   +  EIK ++ + A  +  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 325 -YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANREN--PIYGKIVMSN 380

Query: 584 LCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI               +       CNLGS N++   A   F       ++ T VR 
Sbjct: 381 LCSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPHF-----GKSVETMVRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +   +  N     IGLG MG    L   H+ Y  P++VE        +
Sbjct: 436 LTFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLL 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL-----AEVRDEL-AMNRTSR 743
           ++  + AS ++A+ER   + +F+ S +  G +    +        A V++    ++  + 
Sbjct: 496 NYWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTT 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +LK+ V   G+ + N MA+APT +I+ I   + S+ P    +  +           
Sbjct: 556 ADWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D  K + +A++ID   +++  +  
Sbjct: 606 --------------EKKIGKIYYPA------PYLSNDTLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|227878536|ref|ZP_03996470.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861870|gb|EEJ69455.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 722

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/717 (24%), Positives = 313/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNDYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 207 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 267 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQ 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +    K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 327 NLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 384

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL S +  +V+ L+
Sbjct: 385 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVSDSVQALN 440

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 441 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 500

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA++ GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 501 HAFKESNKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKE 560

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 561 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 620

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 621 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 651

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 652 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|256849453|ref|ZP_05554885.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|262046122|ref|ZP_06019085.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713569|gb|EEU28558.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|260573452|gb|EEX30009.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 722

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/717 (24%), Positives = 311/717 (43%), Gaps = 66/717 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNDYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 207 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 267 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQ 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +    K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 327 NLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 384

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL   +  +V+ L+
Sbjct: 385 SEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALN 440

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 441 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 500

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA+  GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 501 HAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKE 560

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 561 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 620

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 621 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 651

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 652 KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|225869988|ref|YP_002745935.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
 gi|225699392|emb|CAW92839.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
          Length = 724

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 184/765 (24%), Positives = 320/765 (41%), Gaps = 102/765 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-- 292
           T +K+     H +      E   RY+EE V  + L    ++    YL     Y+++    
Sbjct: 14  TRFKRADGTYHFDSD---KEAVQRYLEEHVYPQSLSFDSLEEKWRYLVAHDYYDQEILKA 70

Query: 293 ---------FEY-----------LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK 331
                    F Y           +G    Y  Y L   +GS+    + F  R  M     
Sbjct: 71  YSAECITEAFTYAYQQKFSFLSLMGAMKFYQSYALKTLDGSQY--LEHFEDRAVMNALFL 128

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
                    +  + + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +
Sbjct: 129 ANGDPDLVRDLIDQILSGRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTS 188

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   
Sbjct: 189 LQLSKRGGGVALCLTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAV 248

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H ++  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  +
Sbjct: 249 YLNVHHPEILTFLDTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSPYDIKRV 308

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +     +  I  E Y+R            ISA  L++ +  + FE+G+P++ F D  N R
Sbjct: 309 YGKDMSDIAIT-EEYDRLVANPA-IKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKR 366

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI   S++             E   CNLGSIN+     +     
Sbjct: 367 NPHPQKGRIVMSNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAV--- 423

Query: 619 DKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 I T+VR LD+V   +        +K N  + A+GLG M     L   HI Y S 
Sbjct: 424 -GFEQLIATSVRALDHVSRASDVSCAPSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSA 482

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---- 733
           EAV+  D     ++++A  AS +LA+E+GA++ F+ S +  G +    +   A+ +    
Sbjct: 483 EAVDFTDLFFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKV 542

Query: 734 ----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +   +   S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    +
Sbjct: 543 AALLERYGLRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPV 602

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            V+         V ++ +++                             D+       A+
Sbjct: 603 EVRKEGHLGRIYVPAYQISD-----------------------------DNYAYYERGAY 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           E+ P  +I   +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R  
Sbjct: 634 EVGPEPIINIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR-- 691

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               +  L+G +       V   +++           S   C+ C
Sbjct: 692 ----QDVLEGSEQYEEDTIVALTDTNA----------SGEACQSC 722


>gi|29375102|ref|NP_814255.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis V583]
 gi|227519133|ref|ZP_03949182.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227553837|ref|ZP_03983886.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229548396|ref|ZP_04437121.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255971024|ref|ZP_05421610.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256617389|ref|ZP_05474235.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256957627|ref|ZP_05561798.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959664|ref|ZP_05563835.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|257080135|ref|ZP_05574496.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257083551|ref|ZP_05577912.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085824|ref|ZP_05580185.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088967|ref|ZP_05583328.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257418243|ref|ZP_05595237.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420750|ref|ZP_05597740.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|293384856|ref|ZP_06630699.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|293389146|ref|ZP_06633613.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294780705|ref|ZP_06746066.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|307268567|ref|ZP_07549939.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|307275555|ref|ZP_07556696.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|307288832|ref|ZP_07568810.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|307290615|ref|ZP_07570523.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|312904831|ref|ZP_07763971.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|312908154|ref|ZP_07767132.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312979090|ref|ZP_07790805.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342561|gb|AAO80326.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Enterococcus
           faecalis V583]
 gi|227073410|gb|EEI11373.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227177090|gb|EEI58062.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229306612|gb|EEN72608.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255962042|gb|EET94518.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256596916|gb|EEU16092.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256948123|gb|EEU64755.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950160|gb|EEU66792.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256988165|gb|EEU75467.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256991581|gb|EEU78883.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993854|gb|EEU81156.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997779|gb|EEU84299.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257160071|gb|EEU90031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162574|gb|EEU92534.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|291077860|gb|EFE15224.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|291081517|gb|EFE18480.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294452315|gb|EFG20756.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|306498329|gb|EFM67838.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|306500301|gb|EFM69640.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|306507660|gb|EFM76789.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|306515056|gb|EFM83599.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|310625862|gb|EFQ09145.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310631837|gb|EFQ15120.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|311288124|gb|EFQ66680.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315026266|gb|EFT38198.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2137]
 gi|315032245|gb|EFT44177.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0017]
 gi|315035531|gb|EFT47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0027]
 gi|315143981|gb|EFT87997.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2141]
 gi|315146929|gb|EFT90945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4244]
 gi|315155003|gb|EFT99019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0043]
 gi|315158780|gb|EFU02797.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0312]
 gi|315161037|gb|EFU05054.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0645]
 gi|315166221|gb|EFU10238.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1302]
 gi|315170810|gb|EFU14827.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1342]
 gi|315574920|gb|EFU87111.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309B]
 gi|315576499|gb|EFU88690.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0630]
 gi|315582367|gb|EFU94558.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309A]
 gi|327534209|gb|AEA93043.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis OG1RF]
          Length = 719

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|325690075|gb|EGD32079.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK115]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 290/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL  +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELCDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|315149361|gb|EFT93377.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0012]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQIQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|290580849|ref|YP_003485241.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
 gi|254997748|dbj|BAH88349.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 293/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  K        +  +       + ++A  + +   +F +  L+ DL +  
Sbjct: 32  KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDL-HAY 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     + +Y L  N    E  ++   RV           E  A +    + +
Sbjct: 90  DFQFKSFMAAYKFHQQYALKTNDGE-EYLESIEDRVLFNALYFADGNENLAHDLAMEMIA 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +  +  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPK-IIKTKIKARDLETEISKLQQESGYPYVVNIDTANRAN--PIDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +I+   R L  V D + 
Sbjct: 385 ILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+E +  +  F+ S +  G +         I    +V++    +       W+ L++ 
Sbjct: 505 NIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKVKELFKNHFIPQAEDWEALRQA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I  VS SI P  + +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQGMS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|90962207|ref|YP_536123.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius UCC118]
 gi|90821401|gb|ABE00040.1| Ribonucleoside-diphosphate reductase alpha chain [Lactobacillus
           salivarius UCC118]
          Length = 723

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 296/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +  K    +   +             +   + +   +F +  L + LK E D
Sbjct: 35  EALEAFLNENVKPNTKQFSSIKERINYLIQNNYYEEEFISKYSFEF-IEKLYDYLKKE-D 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L   
Sbjct: 93  FHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIHQ 151

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G + + +R
Sbjct: 152 RYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K 
Sbjct: 212 GAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E Y+  
Sbjct: 272 NADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPNIPK-KVIKARDLEEQISKLQQESGYPYVINIDTANRVN--PISGKIVMSNLCSEI 387

Query: 589 -------TLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                   +N+  E         CNLGS N++   A+  F       ++    R L  V 
Sbjct: 388 LQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNF-----GKSVEVMTRALTFVT 442

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D +    +   +  N     IGLG MG  + L    I Y SPEA+E        +++  +
Sbjct: 443 DKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTL 502

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+ER   + +F+ S +  G +    +      ++         +   ++  W  
Sbjct: 503 VASNKIAKERKVTFDNFENSKYADGRYFDTYLNQEFAPKNARVKELFDGIFIPTKSDWTS 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +                
Sbjct: 563 LKENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + ++    + +A++ D   +I++ +  Q+ +D
Sbjct: 608 ---------ERKIGKIYYPA------PYLSNETLPYYKSAYDTDMRKVIDTYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L++                D+ + + L  +   A   G+K+ YY+R+
Sbjct: 653 QGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|157150204|ref|YP_001450837.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074998|gb|ABV09681.1| ribonucleoside-diphosphate reductase large chain [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  LA  +
Sbjct: 28  LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + +    RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIIMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYASGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|310288087|ref|YP_003939346.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
 gi|309252024|gb|ADO53772.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
          Length = 731

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/722 (24%), Positives = 291/722 (40%), Gaps = 78/722 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E        +L +   +   
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPE---FLDDFYAHAES 106

Query: 291 --FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
             F F  +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + 
Sbjct: 107 SGFEFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGSEQRAVEYLDEML 165

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G  +  +  SCFL  + D +  I   +     L+K  GG+    + 
Sbjct: 166 SGAFQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSN 225

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 226 LRELGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTK 285

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   + A   LFSP +   ++     +  +     E
Sbjct: 286 RENADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSPYDAERVYGKPFADISVTEHYDE 345

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             AD    K +  I A   +  +  + FE+G+P+I F+D  N  +     G +  SNLC+
Sbjct: 346 MVADDRIRKTY--IDAREFFTTLAEIQFESGYPYIVFEDTVNRAN--PIAGRITMSNLCS 401

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               S       CNLGS+N+             LA T+ TA+R L +
Sbjct: 402 EILQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAG------LAGTVETAIRALTS 455

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V +      +   +++N    AIGLG M     L    I Y S EA++  D     +++H
Sbjct: 456 VSEHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYH 515

Query: 694 AISASVELAQERGA-YSSFKGSLWDQ----GVFPIDSIG----------LLAEVRDELAM 738
           A  AS  LA E G  +  F  S + +    G +                L+  + +   +
Sbjct: 516 AYRASHALAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGV 575

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++      
Sbjct: 576 AIPTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRK----- 630

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  +  + Y          + ++  + +  A+EI    +++
Sbjct: 631 -------------------EGKLGRVYYPAA------YMTNENLEYYKDAYEIGWKAIVD 665

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R   ++E + ++
Sbjct: 666 TYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQ 724

Query: 918 GV 919
           G 
Sbjct: 725 GC 726


>gi|300861975|ref|ZP_07108055.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300848500|gb|EFK76257.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|323479609|gb|ADX79048.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis 62]
          Length = 719

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSNYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|328945481|gb|EGG39632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1087]
          Length = 719

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/712 (24%), Positives = 290/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  E     IEE    +   +      +  L   + + +
Sbjct: 32  KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFI-HAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S EAVE        +++  
Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S   W 
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFVPSAEDWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|315223182|ref|ZP_07865043.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
 gi|315187614|gb|EFU21368.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
          Length = 719

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/712 (23%), Positives = 294/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  +      E  ++   +     ++ +  LA+ + +E+
Sbjct: 32  KEALEAFFKENVEPNTKKFSSITKKIHYLIQENYLEKEFIQLYSPEY-IEELASFI-HEQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  E Y  
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGVPFAYIDIT-EKYNE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPKISKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEFVRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S E+VE        +++  
Sbjct: 440 TDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGMTFHNFEKSDYANGTYFDKYLTGEFVPQSDRVKELFTGIFIPSAEDWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPQGLYEWKTECKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|24379141|ref|NP_721096.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           mutans UA159]
 gi|24377046|gb|AAN58402.1|AE014910_6 ribonucleotide reductase, large subunit [Streptococcus mutans
           UA159]
          Length = 719

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/707 (22%), Positives = 293/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  K        +  +       + ++A  + +   +F +  L+ DL +  
Sbjct: 32  KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDL-HAY 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     + +Y L  N    E  ++   RV           E  A +    + +
Sbjct: 90  DFQFKSFMAAYKFHQQYALKTNDGE-EYLESIEDRVLFNALYFADGNENLAHDLAMEMIA 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVTIPDKFYELARRNEDMYLFSPYSIEREYGVPYNYLDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +  +  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPK-IIKTKIKARDLETEISKLQQESGYPYVVNIDTANRAN--PIDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +I+   R L  V D + 
Sbjct: 385 ILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+E +  +  F+ S +  G +         I    ++++    +       W+ L++ 
Sbjct: 505 NIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKIKELFKNHFIPQAEDWEALRQA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I  VS SI P  + +  +                    
Sbjct: 565 VIKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHVDQGMS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|240169273|ref|ZP_04747932.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium kansasii ATCC 12478]
          Length = 696

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/682 (24%), Positives = 274/682 (40%), Gaps = 83/682 (12%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHI-NGS 312
            R  E G+        +       L     L   RD        + +L +RY L    G 
Sbjct: 74  ARLGEAGLDDVARAYIIYRQRRAELRAGKALLGVRDELKLSLAAVMVLRERYLLRDARGR 133

Query: 313 RIEMPQAFFMRVAMGLALKETEK-----EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
             E       R A  +A  E E       + A  F  LL +  F+ ++PTL N+GT    
Sbjct: 134 PTESTGEMMDRTARCVAAAEDEYRTGSSAQWAERFATLLRNLEFLPNSPTLMNAGTDLGL 193

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L+ CF+  V D L  IF  L + A + +  GG G  ++ VR  G  +  T G + G + F
Sbjct: 194 LAGCFVLPVEDSLRSIFATLGQAAEVQRAGGGTGYTFSRVRPAGDRVASTGGTASGPMSF 253

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           L++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +    +        N +  + D
Sbjct: 254 LRLYDTAADVVSMGGRRRGACMAVLDASHPDICDFISAK---AESTSHLTHFNLSVGVGD 310

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            F++ V +     L +P                                  ++ A  L+ 
Sbjct: 311 AFLRAVERGGAHRLVNPRTGK---------------------------TVARMPAAELFD 343

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +       G P + F D  N  +P    G + ++N C E+ L         CNLGSINL
Sbjct: 344 AICQAAHACGDPGLVFLDTINRANPVPARGRIEATNPCGEVPLLPYES----CNLGSINL 399

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                N   D+D+L +    AVR LD+VID++ +   +  ++    R IGLG+MG    L
Sbjct: 400 ARMITNGHLDWDRLGAVTEVAVRFLDDVIDVSRYPFPELAEATRASRKIGLGIMGLAELL 459

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L IPY S E V +A + M  I  HA  AS  LA++RG++ +F  S             
Sbjct: 460 ASLGIPYDSVEGVRLAGQVMRRIQRHAHLASRRLAEDRGSFPAFADSR------------ 507

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                                    V+    RN+   ++APT TI+ I G +  I+P + 
Sbjct: 508 ------------------------LVRFGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFA 543

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             + ++ +      VN       + +  + + +++++    G +    R+P +L+    T
Sbjct: 544 IAFTRAIVGRQLLEVNPCFDRLARDQGFYRDELVAEI-AQRGGVRGYPRLPAELRAAFPT 602

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLR 904
           A EI P W +   +  Q+ +D A S  + L    +   +  +Y  AW   +K  T Y   
Sbjct: 603 AAEIAPQWHLRMQAAVQRHVDAAVSKTVNLPAAATVDDVRAVYLSAWRAKVKGITVYRYG 662

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           SR    +  +  + V  + +  
Sbjct: 663 SREGQVLSYAAPEPVLARADTE 684



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV +R+  +  FD       I +   AV       +    D+   +       L      
Sbjct: 12  QVRRRDATLVPFD-------IARIEAAVARAAREVAYDDPDMPATVARAVADTL-----G 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +E + D VE  L ++G   + R Y++YR+ R+++RA +
Sbjct: 60  PRIASVERVGDFVEARLGEAGLDDVARAYIIYRQRRAELRAGK 102


>gi|227891213|ref|ZP_04009018.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
 gi|227867087|gb|EEJ74508.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
          Length = 723

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 296/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +  K    +   +             +   + +   +F +  L + LK E D
Sbjct: 35  EALEAFLNENVKPNTKQFSSIKERINYLIQNNYYEEEFISKYSFEF-IEKLYDYLKKE-D 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L   
Sbjct: 93  FHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIHQ 151

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G + + +R
Sbjct: 152 RYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K 
Sbjct: 212 GAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E Y+  
Sbjct: 272 NADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPNIPK-KVIKARDLEEQISKLQQESGYPYVINIDTANRVN--PISGKIVMSNLCSEI 387

Query: 589 -------TLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                   +N+  E         CNLGS N++   A+  F       ++    R L  V 
Sbjct: 388 LQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNF-----GKSVEVMTRALTFVT 442

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D +    +   +  N     IGLG MG  + L    I Y SPEA+E        +++  +
Sbjct: 443 DKSDIDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTL 502

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+ER   + +F+ S +  G +    +      ++         +   ++  W  
Sbjct: 503 VASNKIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIPTKSDWTS 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +                
Sbjct: 563 LKEHVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + ++    + +A++ D   +I++ +  Q+ +D
Sbjct: 608 ---------ERKIGKIYYPA------PYLSNETLPYYKSAYDTDMRKVIDTYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L++                D+ + + L  +   A   G+K+ YY+R+
Sbjct: 653 QGMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|209558900|ref|YP_002285372.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540101|gb|ACI60677.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 726

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/759 (25%), Positives = 325/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  NSG  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA  L++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKLFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANYT-----------------------------YYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|262283136|ref|ZP_06060903.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
 gi|262261388|gb|EEY80087.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  LA  +
Sbjct: 28  LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + +    RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIIMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESSNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|257080867|ref|ZP_05575228.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256988897|gb|EEU76199.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPSIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIARERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|91763117|ref|ZP_01265081.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717530|gb|EAS84181.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 645

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/681 (31%), Positives = 303/681 (44%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY  H      E  Q  F RVA   A    +    A   YN
Sbjct: 51  IDRSRDSKLTDFGRATLKDRYLGHN-----ESYQDLFARVASSYA----DDNLHAQRIYN 101

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  I    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDGQWALKSPADG---------------- 264

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVH 580
                       V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V 
Sbjct: 265 -----------TVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +       + TAVC L S+NL  +    + D   +   +R    VL + 
Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKY-DEWKDDNVMINDVMRFLDNVLTDF 372

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+      + AK S    R++GLG+MGF S L    IP  S  +     +  + I  H  
Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA ERGA        +++                                     
Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  ++P   N Y    +SG F V N +LV  L++  
Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+N
Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K +L  I+  AW  GLK+ YY RS+S    E       D K   V      S
Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKS 628

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
              +   P       EC  CQ
Sbjct: 629 KPQTTEQP----EYEECLSCQ 645


>gi|116511804|ref|YP_809020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107458|gb|ABJ72598.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 722

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/713 (25%), Positives = 308/713 (43%), Gaps = 77/713 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E      +      EE ++A  L +   +F         K+E 
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFEF 91

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            F   ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 92  HFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V   +     E +I  E Y++ 
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFVEKYYGKPFAEVDITAE-YDKM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+    I+A  L +++  +  E+G+P+I   D  N  +     GV+  SNLC+EI
Sbjct: 329 VANPEIRKTP-INARELEQELSKLQQESGYPYIVNVDTVNQAN--PVDGVISMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N+L    +     D+  +++ + VR L  + 
Sbjct: 386 LQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTS----SDEFGTSVESMVRALTFIS 441

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ +
Sbjct: 442 ETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYTL 501

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSI------GLLAEVRDEL-AMNRTSRLPWD 747
            AS +LA E+GA + +F+ S +  G +    +       +  +V++    +   +   W 
Sbjct: 502 VASNKLAVEKGASFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIADWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +               
Sbjct: 562 ELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  +  + Y    +   E IP      + +A++ D   +I+  +   + +
Sbjct: 608 ----------EKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRSVIDVYAAATEHV 651

Query: 868 DQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 652 DQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|94987983|ref|YP_596084.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94991865|ref|YP_599964.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94541491|gb|ABF31540.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94545373|gb|ABF35420.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 726

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/759 (25%), Positives = 326/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           ++     +  I  E  +  A+    K +  ISA  L++ +  + FE+G+P++ F D  N 
Sbjct: 309 VYGKDMSDISITEEYDKLLANPAIKKTY--ISARKLFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     +++HA  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYHAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECHSCMI 726


>gi|322372697|ref|ZP_08047233.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
 gi|321277739|gb|EFX54808.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/714 (22%), Positives = 291/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +       + +++  +     +   +   +   Y +
Sbjct: 32  KEALHAFFLENVKPNSMAFNSITEKINYLIENDYIESEFI--GKYEPAFIEKLSAEIYSQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F+ ++     Y +Y L  N  +  + ++   RV           E  A +  N +  
Sbjct: 90  NFRFQSFMSAYKFYQQYALKTNDGQAYL-ESIEDRVLFNALYFADGDEHLASDLANEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDILAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   +       +I     E 
Sbjct: 269 ENADEKVRVKTLSLGVTVPDKFYELARKNEEMYLFSPYSVEKEYGKPFNYIDITAMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPNI--TKTKINARELETEISKLQQESGYPYIVNVDTANRHN--PIDGKIVMSNLCSE 384

Query: 588 ITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +  E               CNLGS N+L    +  F       +I+   R L  V
Sbjct: 385 ILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++  
Sbjct: 440 TDSSSIEAVPSIKNGNQQAHTFGLGAMGLHSYLAKNHIEYGSPESVEFTNIYFMLMNYWT 499

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+E +  +  F+ S +  G +    +          + E+ D           
Sbjct: 500 LVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRVKELFD--GHFIPQAKD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +             
Sbjct: 558 WEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + + IP      + +A+++D   +I+  +   +
Sbjct: 606 ------------EKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|332362637|gb|EGJ40435.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK49]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 291/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELTTFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + +DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQDFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIIMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFDNFEKSDYANGTYFDKYLTDEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
 gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
          Length = 524

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 154/451 (34%), Positives = 238/451 (52%), Gaps = 35/451 (7%)

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +N  WTLF P+E   L D+YG EFE  YE YE++         + + A  LW  +L 
Sbjct: 1   RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEKEGRGK-----KTVKAQKLWYAILE 55

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG+P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L    
Sbjct: 56  AQTETGNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFV 115

Query: 612 --ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                ++D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   
Sbjct: 116 DPIRGEYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLA 175

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ SPEA ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   + 
Sbjct: 176 LRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVT 235

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK+ +   G                 I G ++  +P   N+
Sbjct: 236 P----------TDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNI 268

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +
Sbjct: 269 YSRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVW 328

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A
Sbjct: 329 EISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAA 388

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           ++  + T+     K+    V   N +    G
Sbjct: 389 SAPIQFTVDQEQLKVADTNVARVNGALKKRG 419


>gi|260583951|ref|ZP_05851699.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158577|gb|EEW93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
          Length = 725

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/717 (23%), Positives = 290/717 (40%), Gaps = 80/717 (11%)

Query: 228 LRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
           L ++          +  P     + +          Y+ E         +  D + V   
Sbjct: 32  LHKDKEAVRAFFLEHVNPNTVFFYTLDEK-----LDYLLEHDYLEEEFLNKYDREFVKSL 86

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
               Y++ F F  ++     Y +Y L  N     + + F  R+           E+ A +
Sbjct: 87  MQEIYKKKFRFRSFMSAFKFYKQYALKTNDGERYL-ERFEDRIVFNALFLADGDEQLARD 145

Query: 342 FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               +    +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+
Sbjct: 146 LAEEMIHQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGV 205

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G   + VR  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ 
Sbjct: 206 GVSLSNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIV 265

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FL  +K   D++ R   ++    +PD F + +  +    LFSP +V  ++ +     +I
Sbjct: 266 SFLSTKKENADEKIRVKTLSLGLVVPDKFYELIKNDDMMYLFSPYDVERIYGVPFSYVDI 325

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E YE   +  EI+  + + A  L +++  +  E+G+P+I   D  N  +     G + 
Sbjct: 326 TKE-YENMVNNSEIRKSK-LRARDLEQEISKLQQESGYPYIVNIDTVNKAN--PIDGKII 381

Query: 581 SSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLC+EI        +N++ E   +    S NL +    N         +I  AVR L 
Sbjct: 382 MSNLCSEILQVQSPSVINNAQEYEVLGTDISCNLGSTNIVNLMQSPDFERSIEVAVRALT 441

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N     IGLG MG  +   L  + Y SPE++E+ D     ++F
Sbjct: 442 FVTDHSSIDAVPTVKNGNQKAHTIGLGAMGLHTFFALNQMEYGSPESIEVTDLYFRLLNF 501

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLP 745
           + + AS ++A+ERG  +  F+ S +  G +         E++ E        +   +   
Sbjct: 502 YTLKASHKIAKERGVTFDGFEKSAYASGTYFDAYTESDVEIKSEKVKEIFENLPIPTAED 561

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +LK  V   G+ + N +AIAPT +I+ +   S S+ P  + +  +    +G       
Sbjct: 562 WKQLKADVMADGLYHQNRLAIAPTGSISYVNETSASLHPITRLIEERQEKKTGKTYYPAP 621

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL NE                                   + +A++ID   +I+  +  Q
Sbjct: 622 FLSNE-------------------------------TLPYYKSAYDIDMRKVIDVYAAAQ 650

Query: 865 KWIDQAQSLNLYLDE----------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           K IDQ  SL L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 651 KHIDQGMSLTLFMRSELPEGLYEWKNGRTRKMTTRDLNILRNYAWNKGIKSIYYVRT 707


>gi|27375118|ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27348254|dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 208/682 (30%), Positives = 301/682 (44%), Gaps = 106/682 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G   L DRY L   G      Q  F RV+   A    +    A   Y+
Sbjct: 136 LDRSRDDLLTSFGRLTLTDRYLLAGEG-----LQDMFARVSCAFA----DNVAHAQRLYD 186

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG+G  W
Sbjct: 187 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 246

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G       G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 247 GNVRSIGE--KARGGVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 304

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    + D FM  V     + L SP                    
Sbjct: 305 IRKASGDFNRKSLNLHHGINVTDEFMCAVGAGTAFALRSPKT------------------ 346

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHS 581
                     +V R+I A  LW+++L    +TG P++ F D  N      Q+ +G  V +
Sbjct: 347 ---------NEVVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVST 397

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLC+EITL++       E TAVC L S+NL      N+ +   +   +R    VL + I
Sbjct: 398 SNLCSEITLSTGIDHRGEERTAVCCLSSLNLETWDQWNE-EPGFIEDVMRFLDNVLTHFI 456

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +    +++A+ +    R++GLG+MGF S L    IP     A          +   A +
Sbjct: 457 TVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMEGTLAKSFNLNMFRKLRREADA 516

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV LA+ERG                                        D L++ V   
Sbjct: 517 ASVALARERGPCP-------------------------------------DALERGVMA- 538

Query: 757 GMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R S+ +AIAPTA+I+ IC G S   +P   N+Y    +SG  +V N  L   L  +  
Sbjct: 539 --RFSHKIAIAPTASISIICGGTSACTEPIPANIYTHKTLSGAISVRNPHLAKVLAAKGA 596

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
              A    +  HDGS+ +++ + +  K I  TAFEID  W++E A+ R   I Q+QS+NL
Sbjct: 597 DTSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELAADRAALICQSQSINL 656

Query: 876 YLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL--NAVPVTDPN 932
           YL     K  L  ++  AW  G+K+ YY RS+S +           GK+  +A P   P 
Sbjct: 657 YLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA------AFAGKIAGDATPTQQPA 710

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                       T   EC  CQ
Sbjct: 711 RQR---------TDYEECLACQ 723


>gi|322385109|ref|ZP_08058756.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
 gi|321270733|gb|EFX53646.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/707 (23%), Positives = 292/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  + +  +   +  E     IEE    +   +      +  L+  + + +
Sbjct: 32  KEALEAFFKENVEPSTMKFASI-TEKIQYLIEENYLEKEFIQLYSPEYIEELSAFI-HAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEDMYLFSPYSIEREYGVPFAYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPKITKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PIDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IRT  R L  V D + 
Sbjct: 385 ILQVQEPSLLNDAQEYIHLGTDVSCNLGSTNVVNMMTSPDFGKSIRTMTRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N      GLG MG  S L    I Y S EAVE        +++  +  S 
Sbjct: 445 ITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S +  G +         +     V++    +   +   W EL+ +
Sbjct: 505 NIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAADWAELRDK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|319938785|ref|ZP_08013149.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811835|gb|EFW08101.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 169/712 (23%), Positives = 294/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  E     I+E    +   +      +  LA  + +++
Sbjct: 32  KEALEAFFKENVEPNTKKFSSI-TEKIHYLIQENYLEKEFIQLYSPEYIEELATFI-HDQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGVPFAYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPKINKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I     S                 CNLGS N++    +  F       +IRT  R L  V
Sbjct: 385 ILQVQESSLLNDAQEFLRLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S E+VE        +++  
Sbjct: 440 TDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIAYGSAESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   +   W 
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPQGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|257415188|ref|ZP_05592182.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257157016|gb|EEU86976.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
          Length = 719

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 296/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  ++
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLD-KQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N    E  + +  RVA          E+ A+   + +  
Sbjct: 90  HFQFKSFMAAYKFYSQYALKNNAG-TEYLETYEDRVAFNALYFADGDEELALTLADEMIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  RKI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRK-RKIKARDLENEISKLQQESGYPYIINIDTANKNN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I        +N   E   +    S NL +    N  +      ++R   R L  V D + 
Sbjct: 385 ILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDASE 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S 
Sbjct: 445 IDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
           ++A+E    + +F+ S +  G +    I         +V++    +   +   W  L+  
Sbjct: 505 QIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                    
Sbjct: 565 VKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          + +D    + +A+++D   +I+  +  Q+ +DQ  S
Sbjct: 606 -----EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKVIDVYATAQQHVDQGMS 654

Query: 873 LNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|125624346|ref|YP_001032829.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124493154|emb|CAL98118.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300071130|gb|ADJ60530.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 722

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/713 (25%), Positives = 307/713 (43%), Gaps = 77/713 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E      +      EE ++A  L +   +F         K+E 
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFEF 91

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            F   ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 92  HFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V   +     E +I  E Y++ 
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFVEKYYGKPFAEVDITAE-YDKM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+    I+A  L +++  +  E+G+P+I   D  N  +     GV+  SNLC+EI
Sbjct: 329 VANPEIRKTP-INARELEQELSKLQQESGYPYIVNVDTVNQAN--PVDGVISMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N+L    +     D+  +++ + VR L  + 
Sbjct: 386 LQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTS----SDEFGTSVESMVRALTFIS 441

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ +
Sbjct: 442 ETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYTL 501

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSI------GLLAEVRDEL-AMNRTSRLPWD 747
            AS +LA E+  ++ +F+ S +  G +    +       +  +V++    +   +   W 
Sbjct: 502 VASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIADWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +               
Sbjct: 562 ELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  +  + Y    +   E IP      + +A++ D   +I+  +   + +
Sbjct: 608 ----------EKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVYAAATEHV 651

Query: 868 DQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 652 DQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|324990558|gb|EGC22494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK353]
          Length = 719

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/716 (24%), Positives = 290/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            + + F F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  -HAQGFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGVPFAYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+            KI A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANP-NITKTKIKARDLETEISKLQQESGYPYVVNIDTANRSN--PIDGKIVMSN 380

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  F       +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSPDF-----GKSIRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSR 743
           ++  +  S  +A+ERG  + +F+ S +  G +         +     V++  A +   S 
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    + + E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|306827910|ref|ZP_07461177.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304429829|gb|EFM32871.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 726

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/759 (25%), Positives = 324/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWKALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  S     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPEASDESTTECQSCMI 726


>gi|85375154|ref|YP_459216.1| ribonucleotide-diphosphate reductase subunit alpha [Erythrobacter
           litoralis HTCC2594]
 gi|84788237|gb|ABC64419.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 681

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 216/685 (31%), Positives = 316/685 (46%), Gaps = 103/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++   RD      G + L DRY L       E  Q  F RVA   A    + ++ A   Y
Sbjct: 86  EIDESRDVNLTEFGKETLIDRYLLPG-----EKFQDLFARVADAYA----DDQEHAQRLY 136

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  
Sbjct: 137 DYISRLWFMPATPVLSNGGTNRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTY 196

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL
Sbjct: 197 WGNVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDIHHPEIEEFL 255

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R+  +++    I D FM+ V + A + L SP + S               
Sbjct: 256 EIRKPSGDFNRKALNLHHGVLITDAFMEAVREGAEFDLKSPKDGS--------------- 300

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A +L++K++     TG P+I F D  N   P+ H      V 
Sbjct: 301 ------------VRGTVDARSLFQKLVETRLATGEPYIVFADTVNRMMPKHHRDLGLKVS 348

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +  +      TAVC L S+NL         +++     I   +R LDNV
Sbjct: 349 TSNLCSEITLPTGVDHLGNDRTAVCCLSSLNL-----EKWDEWNGEKDFIEDVMRFLDNV 403

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID     + +AK S    R++G+G+MGF S L   ++P   P A    D+  + I 
Sbjct: 404 LQDYIDRAPDEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNDKMFKQIH 463

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS+ LA+ERG     +      G                                
Sbjct: 464 AKANEASMLLAKERGPCPDAEEM----GAME----------------------------- 490

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L
Sbjct: 491 -------RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLL 543

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K++     A+ + +    GS+ +++ +  + K +  T+FEID  +L+E A+ R  +IDQA
Sbjct: 544 KKKSKDSTAVWNSILERGGSVAHLDFLTPEEKAVFKTSFEIDQRYLLEFAADRAPYIDQA 603

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLNL++     K  L  ++ QAW  G+K+ YYLRS+S          G  G + A    
Sbjct: 604 QSLNLFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEADNTK 657

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           D      S       T   EC  CQ
Sbjct: 658 DAAQFELSAQAGEE-TDYEECLSCQ 681


>gi|259502688|ref|ZP_05745590.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169333|gb|EEW53828.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 723

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/667 (23%), Positives = 285/667 (42%), Gaps = 80/667 (11%)

Query: 279 VYLANDLKY--ERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +LA    Y   ++F F  ++     Y +Y L  +     + + +  RVAM         
Sbjct: 79  AFLAKLYDYLTAQNFHFHSFMAAYKFYAQYALRTDDKEYYL-ENYVDRVAMNALYLADGD 137

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E+ A++  + +    +  +TPT  N G  R  +  SCF     DD+  I   +     L+
Sbjct: 138 EELAMDLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLS 197

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G + + +R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 198 KIGGGVGINLSNLREAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSV 257

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+ EFL  +K   D++ R   ++    +PD F + V   A   LFSP +V  ++   
Sbjct: 258 FHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEAGADMYLFSPYDVERIYGKP 317

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I  E Y+      EI+  +K++A  L  ++  +  E+G+P+I   D  N  +   
Sbjct: 318 FSYVDITKE-YDNLVANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRAN--P 373

Query: 575 HVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI       + A             CNLGS N+      N  D     
Sbjct: 374 IDGKIVMSNLCSEIAQVQVPSKVADDQSYETLGTDISCNLGSTNIA-----NMMDSPDFG 428

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            ++R  +R L ++ D  N   +   K+ N    ++GLG MG  S L   HI Y SP A+E
Sbjct: 429 RSVRAMMRGLTHISDVENLTVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIE 488

Query: 682 IADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL---- 736
                   +++ ++ AS E+A+E +  + +F  S +  G +           + ++    
Sbjct: 489 FTGVYFMLLNYWSLVASNEIAKERQETFHNFAKSAYADGSYFDKYTTKDWGPQSDVVKAL 548

Query: 737 --AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +       W  LK++V   G+ N   +A+AP  + + I   + S+ P    +  +  
Sbjct: 549 FQGIFIPGPADWQALKEKVMQDGLYNEYRLAVAPNGSTSYINDSTASLTPITNRVEERQ- 607

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                                  E MI  + Y          + +D    + +A++ID  
Sbjct: 608 -----------------------EKMIGKIYYPA------PYLSNDTMPYYQSAYDIDMR 638

Query: 855 WLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLK 898
            +I++ +  Q+ +DQ+ SL L++                ++ + + L+ +   A+  G+K
Sbjct: 639 KVIDTYAAAQQHVDQSMSLTLFMRSTIPAGLYEWKDGRTNKMTTRDLNILRHYAYQKGIK 698

Query: 899 TTYYLRS 905
           + YY+R+
Sbjct: 699 SIYYIRT 705


>gi|19745565|ref|NP_606701.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19747688|gb|AAL97200.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes MGAS8232]
          Length = 726

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/759 (24%), Positives = 325/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPDQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG+M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GL 728
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +          
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDVKPQTAK 542

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +A +  +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|269925171|ref|YP_003321794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269788831|gb|ACZ40972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 811

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/653 (25%), Positives = 272/653 (41%), Gaps = 97/653 (14%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMC 353
           +I  DRY     NG+ +E  P+  ++RVA  +A  E   E      + FY++L  F F+ 
Sbjct: 40  KIFLDRYARKDPNGTPLEHYPEEMWLRVAKAIAAVEPNPEAQRQWTLRFYDILQGFRFVP 99

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
               L  +G+       +CF+   P D + GIF  +   A + + SGG+G + + +R  G
Sbjct: 100 GGRILSGAGSGAEVTYYNCFVIPSPEDSVEGIFRNITTAAHIMRRSGGVGVNLSSLRPRG 159

Query: 412 AHIHGTNGKSQGVIPFLKVANDTA-VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           A+I   NG S G   +  + +D     + QGG R+GA+   L+  H D+EEF++ ++   
Sbjct: 160 AYIKTVNGTSSGPCSWAILYSDMTGKVIIQGGSRRGALMIMLDDDHPDIEEFVEYKRKNP 219

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                    N +  + D FM+ V ++  W L                             
Sbjct: 220 ---GHIDHANLSVAVSDAFMEAVKKDLPWDL----------------------------- 247

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           + + KV++ I A  LWRK+    +    P + F D  N RS   +   +   N C E  L
Sbjct: 248 KWQGKVWKTIRARDLWRKIAESAWAYAEPGLVFIDRYNKRSNTWYFENIRCVNPCGEQGL 307

Query: 591 NSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   VCNLG++NLLA          FD++ LA+T R A+R LDNVID   +   + 
Sbjct: 308 PPW----GVCNLGALNLLAFVKHIDGETYFDFEDLANTARVAIRFLDNVIDATVYPFPEN 363

Query: 647 KKS-NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           +++  H  R  GLG MG    L  L + Y SPEA  + +     I   A  AS +LA E+
Sbjct: 364 EEAQKHGARRTGLGTMGLADVLIKLGVKYGSPEAEPLVERIYRTIRDAAYDASADLAAEK 423

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G +  F    + QG F                     R   +E++ +++  G+RN+  + 
Sbjct: 424 GPFPKFDRDKYMQGEF--------------------IRELPEEIQAKIRRQGIRNAVLLT 463

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            APT T +++ GV+  I+P +  +  + +  G+                L+       + 
Sbjct: 464 QAPTGTTSSLAGVNSGIEPVFAFVTKRRDRLGEHL--------------LYHPLAQEWMD 509

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKK 884
            H G           L     ++ ++ P   I   +  QK+ D + S  +   E  + + 
Sbjct: 510 AHPGK---------PLPDYFVSSADLTPEEHIRIQAVVQKYTDSSISKTVNGPEDNTVED 560

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           ++ +Y  A+  G K   Y R  S  +V    L+ VD K          +   S
Sbjct: 561 VERLYMLAYDTGCKGITYYRQGSRDAV----LEAVDTKPKEKAEKPEEAPKAS 609


>gi|197103807|ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477227|gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
          Length = 619

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/683 (29%), Positives = 301/683 (44%), Gaps = 111/683 (16%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+ 
Sbjct: 34  DRSRDANLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRIYDY 84

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N G       SCFL  VPD+L GI     EN  LA   GG+G  W 
Sbjct: 85  ISNLWFMPATPVLSNGGASRGLPISCFLNAVPDNLDGIVSVWNENVALASNGGGIGTYWG 144

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 145 GVRSIGEKVK-GAGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEI 203

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V   A + L SP                     
Sbjct: 204 RKPSGDFNRKSLNLHHGLSITDEFMEAVRDGAMFGLRSPKTGE----------------- 246

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V R++ A +LW+K+L +  +TG P++ F D  N   PQ        V  S
Sbjct: 247 ----------VIREVDARSLWQKILEIRLQTGEPYLIFSDTVNRAMPQHQRELGLQVRQS 296

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EI L++  +      TAVC L S+N     A    ++    + I   +R LDNV++
Sbjct: 297 NLCSEIMLHTGQDHLGQERTAVCCLSSVN-----AEKFLEWRDHPTFIEDVMRFLDNVLE 351

Query: 638 INCH----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
              H     ++ A  +    R++GLGLMGF S L   ++P+ S  A        + +   
Sbjct: 352 DFIHRAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPFESALAKSWNMRLFKTLRRQ 411

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
             +AS  LA ERG                                        D  ++ V
Sbjct: 412 CDAASRTLAAERGPCP-------------------------------------DAAERGV 434

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L +
Sbjct: 435 ME---RFSHKLAIAPTASISIICGGTSAGIEPIPANIYSHKTLSGTFAVKNPYLERLLDE 491

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +     A+   +  ++GS+ ++E +  D K +  TAFEID  W++E A+ R   I Q+QS
Sbjct: 492 KGQNTAAVWDSILANEGSVQHLEFLSQDEKDVFKTAFEIDQRWIVELAADRTPDICQSQS 551

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +NL+L     K  L  ++  AW  G K+ YYLRS+S         +       A    + 
Sbjct: 552 VNLFLPGDIDKWDLHMLHWTAWERGCKSLYYLRSKSVQ-------RAAHAGGEAAQAVEM 604

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                        T   EC  CQ
Sbjct: 605 QVEGK--------TDYEECLACQ 619


>gi|15674554|ref|NP_268728.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910162|ref|YP_281712.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13621660|gb|AAK33449.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes M1 GAS]
 gi|71852944|gb|AAZ50967.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 726

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/759 (24%), Positives = 324/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYSDGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|291455663|ref|ZP_06595053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
 gi|291382591|gb|EFE90109.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
          Length = 731

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/753 (23%), Positives = 296/753 (39%), Gaps = 81/753 (10%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +S    +   +Y  + A   L          + +     Y     A + +      E   
Sbjct: 17  TSAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVAANIKRFDSTAERLE 76

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEM 316
             I        +        L  +   ++    F F  +LG    Y  Y L     R+ +
Sbjct: 77  YLISNQYYNPAVFNQYSAEFLDRIYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRLYL 135

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT 375
            + F  R A          E++A+E+ + + +  F  +TPT  N G  +  +  SCFL  
Sbjct: 136 -EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLVR 194

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+ 
Sbjct: 195 IEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDSF 254

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   Q
Sbjct: 255 SYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAKQ 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            A   LFSP +V  ++     +  +  E+Y+      +      I A   +  +  + FE
Sbjct: 315 KAQMALFSPYDVERVYGKPFADISVT-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQFE 372

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLG 603
           +G+P+I F+D  N  +     G V  SNLC+EI                       CNLG
Sbjct: 373 SGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             LA T+ TA+R L +V +      +   +++N    AIGLG M 
Sbjct: 431 SLNIAKAIDGG------LAYTVETAIRALTSVAEHTSIDAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD---- 717
               L    I Y S E ++  D     +++HA  AS  LA E    + SF  S +     
Sbjct: 485 LHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGHPFKSFATSDYAKPAG 544

Query: 718 QGVFPIDSI----------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           QG +                 + E+  +  +   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLEPRTAKVRELFAKYGIEIPTVSDWETLRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  I  + Y 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVYYP 640

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                    + +D  + +  A+EI    ++++ +   + +DQ  SL L+  D  + + L+
Sbjct: 641 AA------YMTNDNLEYYEDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDLN 694

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R   ++E + ++G 
Sbjct: 695 KAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|71083846|ref|YP_266566.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062959|gb|AAZ21962.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 645

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/681 (30%), Positives = 303/681 (44%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY       + E  Q  F RVA   A    +    A   YN
Sbjct: 51  IDRTRDSKLTDFGKATLKDRYL-----GQNESFQDLFARVASSYA----DDNLHAQRIYN 101

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  I    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPADG---------------- 264

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVH 580
                       V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V 
Sbjct: 265 -----------TVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +       + TAVC L S+NL  +    + D   +   +R    VL + 
Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKY-DEWKDDNVMINDVMRFLDNVLTDF 372

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+      + AK S    R++GLG+MGF S L    IP  S  +     +  + I  H  
Sbjct: 373 IERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVD 432

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA ERGA        +++                                     
Sbjct: 433 QASKDLADERGACPDAADYGYNE------------------------------------- 455

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ IC G S  ++P   N Y    +SG F V N +LV  L++  
Sbjct: 456 ---RFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHG 512

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+N
Sbjct: 513 KNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSIN 572

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L++     K +L  I+  AW  GLK+ YY RS+S    E       D K   V      S
Sbjct: 573 LFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKS 628

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
              +   P       EC  CQ
Sbjct: 629 KPQTTEQP----EYEECLSCQ 645


>gi|21909839|ref|NP_664107.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28896466|ref|NP_802816.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|71903002|ref|YP_279805.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|139474320|ref|YP_001129036.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|21904025|gb|AAM78910.1| putative ribonucleoside-diphosphate reductase large chain
           [Streptococcus pyogenes MGAS315]
 gi|28811717|dbj|BAC64649.1| putative ribonucleoside diphosphate reductase, large chain
           [Streptococcus pyogenes SSI-1]
 gi|71802097|gb|AAX71450.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
 gi|134272567|emb|CAM30833.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 726

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/759 (24%), Positives = 324/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G +  E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKQYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|94989857|ref|YP_597957.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94543365|gb|ABF33413.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 726

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/759 (24%), Positives = 325/759 (42%), Gaps = 94/759 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGS-RIEMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G   +E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKHYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           ++     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 VYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                  I T++R LD V  ++  +     +  N  + A+GLG M     L   HI Y +
Sbjct: 423 APHFEQLITTSIRALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDT 482

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +   
Sbjct: 483 KEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAK 542

Query: 735 ------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    
Sbjct: 543 VATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAP 602

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+   S     V ++ +++                                      A
Sbjct: 603 VEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYERGA 633

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R 
Sbjct: 634 YEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR- 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +  L G +       VT P +S  +     SC  
Sbjct: 693 -----QDVLAGSEQYDEDSLVTAPGASDETTTECQSCMI 726


>gi|312862712|ref|ZP_07722952.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
 gi|311101572|gb|EFQ59775.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
          Length = 719

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/713 (23%), Positives = 293/713 (41%), Gaps = 80/713 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +       + +++  + +    F +  L+ D+ + +
Sbjct: 32  KEALRAFFLENVKPNSMVFNSITDKINYLIENDYIESEFIGKYEPAF-IEKLSADI-HTQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            F F+ ++     Y +Y L  N    E   ++   RV           E  A +  N + 
Sbjct: 90  KFRFQSFMAAYKFYQQYALKTNDG--ESYLESIEDRVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +       +I     E
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGKPYNYIDITAMYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+        KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+
Sbjct: 328 LVANPNI--TKTKINARELETEISKLQQESGYPYIVNVDTANRYN--PIDGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +  F       +I+   R L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDEL-AMNRTSRLPW 746
            +  S  +A+E +  +  F+ S +  G +         +     +++            W
Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQAKDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +              
Sbjct: 559 EELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------- 605

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E  I  + Y   S+ + + IP      + +A+++D   +I+  +   + 
Sbjct: 606 -----------EKKIGKIYYPANSL-STDTIP-----FYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|121534255|ref|ZP_01666079.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
 gi|121307025|gb|EAX47943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
          Length = 566

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/636 (27%), Positives = 284/636 (44%), Gaps = 87/636 (13%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFM 352
            + +L  RY         E P+  F RVA  +A  E     +++    E+Y +++   F+
Sbjct: 6   AMAVLKARYLREG-----ETPEKMFWRVAEYVAEAEALYGGDRQAACQEYYAIMAGLEFL 60

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++P L N+G +  Q+++CF+  V D L  IF  L+  A++ +  GG G  ++ +R  G 
Sbjct: 61  PNSPALMNAGRKQAQMAACFVLPVDDSLGDIFDTLKHAALIHQSGGGTGFSFSRLRPKGD 120

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I GTNGK+ G + FL V +     V QG  R+GA  A L   H D+EEF+  ++    D
Sbjct: 121 RIAGTNGKASGPVSFLHVYDAATEVVRQGAVRRGANMAVLRVDHPDIEEFITAKR----D 176

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R   ++ N +  I D FM  V Q+  + L  P                            
Sbjct: 177 RTVLNNFNLSVGITDAFMVAVAQDRSFALVHPRTG------------------------- 211

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +  R++SA  L+  M  M +E G P + F D  N  +P  H+G   + N C+E  L  
Sbjct: 212 --RTVRQVSARRLFDLMAAMAWENGEPGLFFLDTVNRANPTPHLGNFEAPNPCSEQPLLP 269

Query: 593 SSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                  C LGS+NL    A +    DYD+L+  +R AVR LDN+ID N + +    ++ 
Sbjct: 270 YES----CVLGSVNLAKMVAADGQHLDYDRLSVVVRRAVRFLDNIIDRNWYPLPAVAEAT 325

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+MG      +L IPY S +AV +  + M FI+  A   S  LA ERG + +
Sbjct: 326 LRTRKIGLGIMGLADLFIMLDIPYGSKQAVLLTADIMRFITAEARRESARLAAERGPFPA 385

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           + GS+++  + P                                   +RN+    IAPT 
Sbjct: 386 YPGSIYESSIGP-----------------------------------VRNATVTTIAPTG 410

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ I   S  I+P +   + +  + G     +N  ++  L +R L    +   +K H G
Sbjct: 411 TISIIANCSSGIEPLFALAFSRHVLGGQVLASINPTVLAYLDKRGLLTTDVEKTIK-HQG 469

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFI 888
           S+ N   +P  +K++ ATA EI P+W +   +  Q++ D A S  +    +     +  I
Sbjct: 470 SVRNT-GLPYHVKQVLATAHEIRPIWHVAQLAAAQRYTDNAVSKTVNLPHKAMPHDVARI 528

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +  A+  G K     R  S    ++  ++GV    +
Sbjct: 529 FSLAYRSGCKGVTVYRDGSR--DQQVLVQGVAANCS 562


>gi|304320879|ref|YP_003854522.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303299781|gb|ADM09380.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 628

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/683 (30%), Positives = 313/683 (45%), Gaps = 107/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   + DRY L       E  Q  F RVA        +    A   Y+ 
Sbjct: 39  DRSRDALLTDFGKTTMDDRYLLEG-----ESYQDMFARVATAY----GDDADHAQRIYDY 89

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W 
Sbjct: 90  ISKLWFMPATPVLSNGGASRGLPISCFLNAVDDSLDGIVGTWNENVWLASNGGGIGTYWG 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +   +G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 150 GVRSIGESVK-GHGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEI 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V ++  + L SP                     
Sbjct: 209 RKASGDFNRKSLNLHHGINITDAFMEAVARDEEFGLLSPKTGE----------------- 251

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-VVHSS 582
                     V R ++A  LW+K+L +  +TG P++ F D  N      Q+ +G  V +S
Sbjct: 252 ----------VLRTVNARKLWQKILEIRLQTGEPYLVFADTVNRSMAKHQRDLGLKVSTS 301

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC EI L++  +      TAVC L S+N     A   F++    + I   +R LDNV  
Sbjct: 302 NLCAEIMLHTGEDHLGQERTAVCCLSSVN-----AEKYFEWKDEPTFIEDVMRFLDNVLE 356

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             I+     + KA  S    R++GLGLMGF S L  + +P+ S  A     +  + I   
Sbjct: 357 DFINRAPPEMAKAVYSARRERSVGLGLMGFHSFLQQMGVPFESAMAKSWNIKLFKHIRMG 416

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A +ASV LA+ERGA                                       D  ++ +
Sbjct: 417 ADAASVTLAEERGACL-------------------------------------DAAERGI 439

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           K    R S+ MAIAPTA+I+ IC G S  I+P   N+Y    +SG FTV N  L   L++
Sbjct: 440 KQ---RFSHKMAIAPTASISIICGGASPCIEPIPANVYTHKTLSGSFTVKNRALEEMLEE 496

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +   D+   + +  ++GS+ +++ + D+ K +  TAFEID  W+++ A+ R  +I Q+QS
Sbjct: 497 KGCNDDDTWASILENEGSVQHLDCLTDEEKAVFKTAFEIDQRWVVDLAADRAPFICQSQS 556

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +N++L     K  L  ++  AW  G+K+ YY RS+S    + +  +G      A      
Sbjct: 557 VNVFLPGDINKWDLHMLHWTAWEKGVKSLYYCRSKSVQRTQFAGGRGAAEIDAASAAALA 616

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                        T   EC  CQ
Sbjct: 617 ER-----------TDYDECLACQ 628


>gi|83592780|ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575694|gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 629

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/681 (31%), Positives = 307/681 (45%), Gaps = 112/681 (16%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            RD      G  +L DRY L   G      Q  F RV+   A    +    A   Y+ +S
Sbjct: 47  SRDDKLNAFGKAMLGDRYLLPGEG-----IQDMFARVSCAFA----DNAAHAQRLYDAMS 97

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              FM +TP L N GT+     SCFL TVPD L GI     EN  LA   GG+G  W  V
Sbjct: 98  KLWFMPATPILSNGGTQRGLPISCFLNTVPDSLEGIVAIWNENVDLASNGGGIGTYWGGV 157

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R +G  +   NG + G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++RK
Sbjct: 158 RSIGEAVK-GNGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRK 216

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
            +GD  R++ +++ A  I D FM+ V  +  + L SP                       
Sbjct: 217 ASGDFNRKSLNLHHAINITDDFMEAVRDDRQFALKSPKSGE------------------- 257

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHSSNL 584
                   V R + A  LW+K+L    +TG P++ F D  N      Q+ +G  V SSNL
Sbjct: 258 --------VLRSVGARQLWQKILETRLQTGEPYLLFTDTVNRALPKHQRDLGLRVSSSNL 309

Query: 585 CTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV---- 635
           C EITL +  +      TAVC L S+N+         +++     I   +R LDNV    
Sbjct: 310 CAEITLPTGRDHRGQERTAVCCLSSLNI-----ETWDEWENAPGFIEDVLRFLDNVLSHF 364

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+     +E+A  +    R++GLG+MGF S L    IP+ S  A          I   A 
Sbjct: 365 IETAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPFESALAKSWNLRLFRKIRRDAD 424

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +ASV+LA ERGA                                        +  +R   
Sbjct: 425 AASVDLADERGACP--------------------------------------DAAERGMK 446

Query: 756 IGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R S  +AIAPTA+I+ IC G S  ++P   N+Y    +SG F+V N  L   L  + 
Sbjct: 447 --ARFSAKLAIAPTASISIICGGTSACVEPIPANVYTHKTLSGSFSVRNPHLARRLADKG 504

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L        +  H+GS+ ++E + DD K +  TAFEID  W+I+ A+ R  +I Q+QS+N
Sbjct: 505 LDTAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLAADRAPFICQSQSIN 564

Query: 875 LYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           LYL   + K  L  ++  AW  GLK+ YY RS+S         +   G+ ++ P  D   
Sbjct: 565 LYLPADADKWDLHMLHWTAWRRGLKSLYYCRSKSVQRAAFVGREKPSGETSSAPRAD--- 621

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                          EC  CQ
Sbjct: 622 -------------YDECLACQ 629


>gi|57239292|ref|YP_180428.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579256|ref|YP_197468.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161371|emb|CAH58294.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417882|emb|CAI27086.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 595

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 308/680 (45%), Gaps = 102/680 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            YERD      G  +L DRY L       E  Q  F+R++   A    +  + A   Y+ 
Sbjct: 7   DYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYA----DNSEHAQRLYDY 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 58  MSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYWG 117

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLDL
Sbjct: 118 NLRSIGEKVR-GSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDL 176

Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           RK TG D  R+  +++    + D FMK V  +A W L SP +                  
Sbjct: 177 RKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKD------------------ 218

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHS 581
                      V   + A  +W K+LT   ETG P+I F D  N   P+ +  +   +  
Sbjct: 219 ---------QSVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIKM 269

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLCTEITL +  +      TA+C L S+NL  ++   + +   +   +R    VL + I
Sbjct: 270 SNLCTEITLATGYDHLNKSRTAICCLSSLNL-EYYEQWKDNELFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATMWNKKIFSHIKKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G                                             +   +
Sbjct: 389 ASYRIAIEKGPCPD----------------------------------------AKDAGV 408

Query: 757 GMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R  N ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L  +  
Sbjct: 409 MERFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I QAQS+N+
Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528

Query: 876 YLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K+ L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYDECLSCQ 595


>gi|251781890|ref|YP_002996192.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390519|dbj|BAH80978.1| ribonucleoside-diphosphate reductase alphachain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 728

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 182/733 (24%), Positives = 317/733 (43%), Gaps = 78/733 (10%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
            M     E     I+EG   + + +   D D++  A    Y++D+ F   +G    Y  Y
Sbjct: 46  VMFPSLEEKLAYLIKEGYYEQAIFDLYPD-DVIKEAFQYAYQQDYRFLNLMGAMKFYQSY 104

Query: 306 FLHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            L   +G    E  +    RV M         +         +    F  +TPT  N+G 
Sbjct: 105 ALKTLDGKYYLETVED---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGK 161

Query: 364 -RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +R +GA I     ++ 
Sbjct: 162 KRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKEIENQAT 221

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   +   
Sbjct: 222 GIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALG 281

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             IPD+  +   +N    LFSP ++  ++     +  I  E  +  A+    K +  ISA
Sbjct: 282 LVIPDITFQLAKENKEMALFSPYDIKRVYGKDMSDISITEEYNKLLANPAIKKTY--ISA 339

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
             L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+EI   S+         
Sbjct: 340 RKLFQLIAELHFESGYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLS 399

Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKS 649
                E   CNLGSIN+    A    D    +  I T++R LD V   +        +K 
Sbjct: 400 FKDIGEDICCNLGSINI----AEAMTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKG 455

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  + A+GLG M     L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++
Sbjct: 456 NAANHAVGLGAMNLHGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFA 515

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +    +   A+ + +              +   W  L + ++T G+ N+
Sbjct: 516 DFERSTYADGSYFKQYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANA 575

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           + +A+APT +I+ +   + S+ P    + V+   +     V ++ +N+            
Sbjct: 576 HLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGNLGRIYVPAYQINQ------------ 623

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
                            ++       A+E+ P  +I+  +  QK +DQA SL L++ D+ 
Sbjct: 624 -----------------ENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQA 666

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + L+  Y QA+ +   + YY+R R      +  L G +         D +S   S+  
Sbjct: 667 TTRDLNRSYIQAFKLKCASIYYVRVR------QEVLAGSEQY-------DEDSQLDSVDK 713

Query: 941 PSSCTSDTECEVC 953
                +  EC+ C
Sbjct: 714 NGLTDTINECQSC 726


>gi|163791217|ref|ZP_02185633.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159873487|gb|EDP67575.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 727

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/719 (24%), Positives = 299/719 (41%), Gaps = 90/719 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE +   + +           L  +      E+ ++   L +   D + V    D  Y R
Sbjct: 38  REAVRAYFLEHVNPNTVFFYTLDEKLNYLIEEDYIEEEFLLK--YDREFVRALFDDIYSR 95

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +   +  A+ LA  +T   K A    + +
Sbjct: 96  KFRFRSFMSAFKFYTQYALKTNDGERFLERYEDRIVFNALYLADGDT---KLASRLADEI 152

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + +
Sbjct: 153 VNQRYQPATPTFLNAGRKRRGELVSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLS 212

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I   +  S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  
Sbjct: 213 NLRASGDPIKKIDNASSGVVPVMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLST 272

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    +    LFSP +V  ++       +I  E Y
Sbjct: 273 KKENADEKIRVKTLSLGLVVPDKFYELAAHDEQMYLFSPYDVERIYGEPFAYIDITKE-Y 331

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   +  EI+  + ISA  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 332 DNMVNNEEIRKSK-ISARELENEISKLQQESGYPYIINVDTANREN--PVYGTITMSNLC 388

Query: 586 TEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N++    +  F       +I T VR L 
Sbjct: 389 SEILQIQEPSLINNDQTYEHLGTDISCNLGSTNIVNLMKSPNF-----GQSIDTMVRALT 443

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N  +  IGLG MG  + L L  I Y SPE+VE  D   + +++
Sbjct: 444 MVTDQSSIDAVPSIKNGNDRYHTIGLGAMGLHTFLALNQIHYGSPESVEFTDVYFKLLNY 503

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSR 743
           + + +S ++A+ER   + +F+ S +  G +    I          +  + D   +   + 
Sbjct: 504 YTLVSSNKVAKERGTTFYNFEKSKYANGTYFDKYINENFVFSSEKVQHLFD--GIQVPTI 561

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W  LK+ V + G+ + N +A+APT +I+ +   S S+ P  + +  +    +G     
Sbjct: 562 EDWAALKEAVMSDGLYHQNRLAVAPTGSISYVNETSSSLHPITRLIEERQEKKTGKTYYP 621

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL N                               D    + +A+++D   +I+  + 
Sbjct: 622 APFLSN-------------------------------DTMPYYKSAYDMDMRQVIDVYAA 650

Query: 863 RQKWIDQAQSLNLY----------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            QK IDQ  SL L+                  + + + L+ +   AW  G+K+ YY+R+
Sbjct: 651 AQKHIDQGMSLTLFLRSEIPEGLYEWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 709


>gi|225869035|ref|YP_002744983.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702311|emb|CAX00108.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 724

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/767 (24%), Positives = 323/767 (42%), Gaps = 106/767 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-- 292
           T +K+     H +      E   RY+EE V  + L    ++    YL     Y+++    
Sbjct: 14  TRFKRADGTYHFDSD---KEAVQRYLEEHVYPQSLSFDSLEEKWRYLVAHDYYDQEILKA 70

Query: 293 ---------FEY-----------LGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
                    F Y           +G    Y  Y L  ++GS+    + F  R  M     
Sbjct: 71  YSAECITEAFTYAYQQKFSFLSLMGAMKFYQSYALKSLDGSQY--LEHFEDRAVMNALFL 128

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
                    +  + + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +
Sbjct: 129 ANGDPDLVRDLIDQILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTS 188

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   
Sbjct: 189 LQLSKRGGGVALCLTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAV 248

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H ++  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  +
Sbjct: 249 YLNVHHPEILTFLDTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSPYDIKRV 308

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +     +  I  E Y+R            ISA  L++ +  + FE+G+P++ F D  N R
Sbjct: 309 YGKDMSDIAIT-EEYDRLVANPA-IKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKR 366

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI   S++             E   CNLGSIN+     +     
Sbjct: 367 NPHPQKGRIVMSNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAA--- 423

Query: 619 DKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 I T++R LD+V   +        +K N  + A+GLG M     L   HI Y S 
Sbjct: 424 -GFEQLIATSIRALDHVSRASDVSCAPSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSA 482

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---- 733
           EAV+  D     ++++A  AS +LA+E+GA++ F+ S +  G +    +   A+ +    
Sbjct: 483 EAVDFTDLFFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKV 542

Query: 734 ----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +       S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    +
Sbjct: 543 AALLERYGFRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPV 602

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            V+         V ++ +++                             D+       A+
Sbjct: 603 EVRKEGHLGRIYVPAYQISD-----------------------------DNYAYYERGAY 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           E+ P  +I   +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R  
Sbjct: 634 EVGPEPIINIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR-- 691

Query: 909 TSVEKSTLKGVDGKLNA--VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               +  L+G +       VP TD N+S  +            C+ C
Sbjct: 692 ----QDVLEGSEQYEEDTIVPFTDTNASGEA------------CQSC 722


>gi|322387900|ref|ZP_08061507.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
 gi|321141173|gb|EFX36671.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
          Length = 719

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/712 (23%), Positives = 295/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +      ++ ++   + +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNSMVFDSITDKIDYLIKQDYIETAFIKKYRPEF-LEELYQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGTYFDKYTSGQFVPKSDRVKELFEGIFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|184154756|ref|YP_001843096.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|260663215|ref|ZP_05864107.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226100|dbj|BAG26616.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552407|gb|EEX25458.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 723

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/717 (23%), Positives = 301/717 (41%), Gaps = 80/717 (11%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +          + ++   + +    F L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSVMERLNWLIENDYLEEDFIRQYTPAF-LDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++       +I  E 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGKPFSYVDITKE- 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      E    +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNL
Sbjct: 327 YDNLVANPE-ITKKKVNARELEDEISKLQQESGYPYIVNVDTVNKAN--PIEGTIVMSNL 383

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N+      N  +   L  ++R  +R L
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRGL 438

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            ++ D  +   +   K  N    ++GLG MG    L   HI Y SP A+E        ++
Sbjct: 439 THISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLN 498

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +  + AS E+AQE+   +++F+ S +  G +       D     A V++  A     +  
Sbjct: 499 YWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPD 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +            
Sbjct: 559 DWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQ----------- 607

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E MI  + Y          + +D    + +A++ D   +I++ +  Q
Sbjct: 608 -------------EKMIGKVYYPA------PYLSNDTMPYYRSAYDTDMRSVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ+ S+ L++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 649 EHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|323126701|gb|ADX23998.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 728

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 183/732 (25%), Positives = 318/732 (43%), Gaps = 78/732 (10%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYF 306
           M     E     I+EG   + + +   D D++  A    Y++D+ F   +G    Y  Y 
Sbjct: 47  MFPSLEEKLAYLIKEGYYEQAIFDLYPD-DVIKEAFQYAYQQDYRFLNLMGAMKFYQSYA 105

Query: 307 LHI-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
           L   +G    E  +    RV M         +         +    F  +TPT  N+G  
Sbjct: 106 LKTLDGKYYLETVED---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKK 162

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +R +GA I G   ++ G
Sbjct: 163 RRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATG 222

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   +    
Sbjct: 223 IVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGL 282

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            IPD+  +   +N    LFSP ++  ++     +  I  E  +  A+    K +  ISA 
Sbjct: 283 VIPDITFQLAKENKEMALFSPYDIKRVYGKDMSDISITEEYNKLLANPAIKKTY--ISAR 340

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------- 595
            L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+EI   S+          
Sbjct: 341 KLFQLIAELHFESGYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSF 400

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSN 650
               E   CNLGSIN+    A    D    +  I T++R LD V   +        +K N
Sbjct: 401 KDIGEDICCNLGSINI----AEAMTDAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGN 456

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             + A+GLG M     L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ 
Sbjct: 457 AANHAVGLGAMNLHGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFAD 516

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSN 762
           F+ S +  G +    +   A+ + +              +   W  L + ++T G+ N++
Sbjct: 517 FERSTYADGSYFKQYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAH 576

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A+APT +I+ +   + S+ P    + V+   +     V ++ +N+             
Sbjct: 577 LLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGNLGRIYVPAYQINQ------------- 623

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                           ++       A+E+ P  +I+  +  QK +DQA SL L++ D+ +
Sbjct: 624 ----------------ENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQAT 667

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + L+  Y QA+ +   + YY+R R      +  L G +         D +S   S+   
Sbjct: 668 TRDLNRSYIQAFKLKCASIYYVRVR------QEVLAGSEQY-------DEDSQLDSVDKN 714

Query: 942 SSCTSDTECEVC 953
               +  EC+ C
Sbjct: 715 GLTDTINECQSC 726


>gi|213693324|ref|YP_002323910.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524785|gb|ACJ53532.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459506|dbj|BAJ70127.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 731

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/755 (23%), Positives = 296/755 (39%), Gaps = 81/755 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK------LRR-EVLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L          + +     Y     A + +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVAANSKQFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI 314
               I        +        L      ++    F F  +LG    Y  Y L     R+
Sbjct: 75  LDYLISNQYYNPDVFAQYSAEFLDRFYEHVE-SAGFEFGTFLGAFKFYTSYALKTFDGRL 133

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
            + + F  R A          E +A E+ + + +  F  +TPT  N G  +  +  SCFL
Sbjct: 134 YL-EDFPQRCAAVALELAAGNEAQATEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFL 192

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D
Sbjct: 193 VRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKMLED 252

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +  
Sbjct: 253 SFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELA 312

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            Q A   LFSP +V  ++     +  ++ E+Y+      +      I A   +  +  + 
Sbjct: 313 KQKAQMALFSPYDVERVYGKSFADISVS-EHYDEMVAD-DRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N  +     G V  SNLC+EI                       CN
Sbjct: 371 FESGYPYIVFEDTVNRAN--PIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCN 428

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+             LA T+ TA+R L +V +    + +   +++N    AIGLG 
Sbjct: 429 LGSLNIAKAMDGG------LAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQ 482

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD-- 717
           M     L    I Y S E ++  D     +++HA  AS  LA E   A+ SF  S +   
Sbjct: 483 MNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGQAFKSFATSDYAKP 542

Query: 718 --QGVFPIDSI----------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             QG +                 + E+  +  +   +   W+ L+  +   G+ N N  A
Sbjct: 543 AGQGNYFDKYTDGRRSLEPRTAKIRELFAKYGIAIPTAANWEALRDAILKDGIYNQNLQA 602

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + PT +I+ I   + SI P    + ++                         E  I  + 
Sbjct: 603 VPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGRVY 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
           Y          + +D  + +  A+EI    ++++ +   + +DQ  SL L+  D  + + 
Sbjct: 639 YPAA------YMTNDNLEYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRD 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+     AW  G+KT YY+R R   ++E + ++G 
Sbjct: 693 LNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVQGC 726


>gi|58617310|ref|YP_196509.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Gardel]
 gi|58416922|emb|CAI28035.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 595

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 309/680 (45%), Gaps = 102/680 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            YERD      G  +L DRY L       E  Q  F+R++   A    +  + A   Y+ 
Sbjct: 7   DYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYA----DNSEHAQRLYDY 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 58  MSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYWG 117

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLDL
Sbjct: 118 NLRSIGEKVR-GSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDL 176

Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           RK TG D  R+  +++    + D FMK V  +A W L SP +                  
Sbjct: 177 RKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKD------------------ 218

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHS 581
                      V   + A  +W K+LT   ETG P+I F D  N   P+ +  +   +  
Sbjct: 219 ---------QSVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIKM 269

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLCTEITL +  +      TA+C L S+NL  ++ + + +   +   +R    VL + I
Sbjct: 270 SNLCTEITLATGYDHLNKSRTAICCLSSLNL-EYYEHWKDNELFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIKKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G                                             +   +
Sbjct: 389 ASYRIAIEKGPCPD----------------------------------------AKDAGV 408

Query: 757 GMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R  N ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L  +  
Sbjct: 409 MERFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I QAQS+N+
Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528

Query: 876 YLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K+ L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYDECLSCQ 595


>gi|326800311|ref|YP_004318130.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326551075|gb|ADZ79460.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 705

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/715 (26%), Positives = 309/715 (43%), Gaps = 73/715 (10%)

Query: 226 EKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            +L ++   V +       K T         E     IE              F+ +   
Sbjct: 30  FRLYKDKEAVRSYFLDYVNKNT--VFFYTLKEKIDYLIENKYYINFYA--HYSFEQMKEV 85

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            D  Y + F F  ++     +  Y L  +     +E  +   + V++ LA  +     RA
Sbjct: 86  YDFVYAKKFRFPSFMSAFKFFQSYALRDDSGEKFLERYEDRVVCVSLYLASGDL---NRA 142

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           +E+  +L +  +  +TPT  N+G     +L SCFL  + D L GI  A+ E   L+   G
Sbjct: 143 LEYAEILINQEYQPATPTFLNAGKLRSGELVSCFLDEIGDSLSGISYAIDEAMKLSSIGG 202

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+  + + VR  G  I G  G+S GV+P +K+  DT    NQ G+R GA   YL  +H D
Sbjct: 203 GVSFNISKVRARGEAIKGVEGRSSGVLPVMKIMEDTFSYANQLGQRPGAGAVYLNVFHSD 262

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEFLD +K   D++ R   ++    IPD FM+    +    LF P  V   +  Y  E 
Sbjct: 263 IEEFLDCKKINVDEKSRIKSLSIGVIIPDKFMQIAEHDEVCYLFYPHTVYQEYGQYLDEM 322

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           ++  + Y+      ++   RKI+A  L  K+     E+G+P++ FKD  N       +G 
Sbjct: 323 DMT-KMYDELVSNPKV-KKRKINARHLLIKVAQTQKESGYPYLFFKDNANRGHALNGIGS 380

Query: 579 VHSSNLCTEITL-------NSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIR 626
           V  SNLCTEI         N   EE  +     CNLGS+N+     N      ++   ++
Sbjct: 381 VKFSNLCTEIMQLSEVSDINPYHEEDTIRYGISCNLGSLNIATTMENR-----RIKEVVK 435

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TA+R L  V D+     +   +K+N    ++GLG M     L    I Y S EA++  + 
Sbjct: 436 TAMRSLTVVSDMTDIKMVPTIQKANRELHSVGLGAMNLHGFLAKNFITYESKEALDFCNV 495

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AM 738
               ++F+++  S+E+A+ERG  +  F+ S +  G +       D   +   V++    +
Sbjct: 496 FFMMVNFYSLECSMEIAKERGVTFKGFENSDYANGAYFDKYINNDYFPVSDRVKELFEGI 555

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               R  W++LK+ V   G+ ++  MAIAP  + + I   + S+ P    + V+    GD
Sbjct: 556 TIPDRAAWEKLKQDVMQHGVYHAYRMAIAPNQSTSYIMNATASVMPVVDTIEVRE--YGD 613

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            T                                 +  + +D    + +A+++D   ++ 
Sbjct: 614 STTYYP-----------------------------MPYLNNDNYFYYKSAYDMDQNNVLR 644

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             S  Q+ +DQ  S  L+ +   + + L   Y  A  MGLK+ YY R+R A+  E
Sbjct: 645 LISVIQRHVDQGISTILHTNSKDTTRDLAKYYIYAHKMGLKSLYYTRTRKASIDE 699


>gi|15672957|ref|NP_267131.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723918|gb|AAK05073.1|AE006332_2 ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis Il1403]
 gi|326406519|gb|ADZ63590.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis CV56]
          Length = 722

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/713 (25%), Positives = 304/713 (42%), Gaps = 77/713 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E      +      EE ++A  L +   +F         K+E 
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFEF 91

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            F   ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 92  HFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V   +     E +I  E Y++ 
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFVEKYYGKPFAEVDITAE-YDKM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+    I+A  L +++  +  E+G+P+I   D  N  +     GV+  SNLC+EI
Sbjct: 329 VANPEIRK-TSINARELEQELSKLQQESGYPYIVNVDTVNQAN--PVDGVISMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N+L    +     ++  ++I   VR L  + 
Sbjct: 386 LQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTS----SNEFGTSIEAMVRALTFIS 441

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ +
Sbjct: 442 ETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYTL 501

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL--AMNRTSRLPWD 747
            AS +LA E+  ++ +F+ S +  G +       D    ++    EL   +   +   W 
Sbjct: 502 VASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +               
Sbjct: 562 ALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  +  + Y    +   E IP      + +A++ D   +I+  +   + +
Sbjct: 608 ----------EKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVYAAATEHV 651

Query: 868 DQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 652 DQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|223932818|ref|ZP_03624815.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|330833007|ref|YP_004401832.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           suis ST3]
 gi|223898527|gb|EEF64891.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|329307230|gb|AEB81646.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis ST3]
          Length = 719

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/716 (23%), Positives = 304/716 (42%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E +   +K+       +   +  +      E  ++   L +   +F ++ +   L
Sbjct: 28  LHKDQEAVKAFFKENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           K +++F F  ++     Y++Y L  N     + ++   RV           E+ A+   N
Sbjct: 87  K-DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGNEELALNLAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSN--PVDGKIIMSN 380

Query: 584 LCTEI-------TLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI        +N S E         CNLGS N++    +  F       ++RT  R 
Sbjct: 381 LCSEILQVQTPSVINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDF-----GRSVRTMTRA 435

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +   +  N    +IGLG MG  S L    I Y S  AVE  +     +
Sbjct: 436 LTYVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLL 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSR 743
           ++  +  S  +A+ER   + +F+ S +  G +    +    + + E        +   S 
Sbjct: 496 NYWTLVESNNIARERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSG 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +L+++VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +           
Sbjct: 556 QDWADLREKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ---------- 605

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y    +   E IP      + +A+++D   +I+  +  
Sbjct: 606 --------------EKKIGKIYYPAAGLAT-ETIP-----FYKSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|322516574|ref|ZP_08069488.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
 gi|322124844|gb|EFX96268.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
          Length = 719

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/713 (23%), Positives = 293/713 (41%), Gaps = 80/713 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +       + +++  + +    F +  L+ D+ + +
Sbjct: 32  KEALRAFFLENVKPNSMAFNNITDKINYLIENDYIESEFIGKYEPAF-IEKLSADI-HTQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            F F+ ++     Y +Y L  N    E   ++   RV           E  A +  N + 
Sbjct: 90  KFHFQSFMAAYKFYQQYALKTNDG--ESYLESIEDRVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +       +I     E
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGKPYNYIDITAMYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+        KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+
Sbjct: 328 LVANPNI--TKTKINARELETEISKLQQESGYPYIVNVDTANRHN--PIDGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +  F       +I+   R L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDEL-AMNRTSRLPW 746
            +  S  +A+E +  +  F+ S +  G +         +     +++            W
Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQAKDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +              
Sbjct: 559 EELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------- 605

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E  I  + Y   S+ + + IP      + +A+++D   +I+  +   + 
Sbjct: 606 -----------EKKIGKIYYPANSL-STDTIP-----FYTSAYDMDMRKVIDVYAAATEH 648

Query: 867 IDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +DQ  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 649 VDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|322411233|gb|EFY02141.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 728

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 179/724 (24%), Positives = 314/724 (43%), Gaps = 78/724 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313
               I+EG   + +       D++  A    Y++D+ F   +G    Y  Y L   +G  
Sbjct: 55  LAYLIKEGYYEQAI-FDPYPDDVIKEAFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKY 113

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
             E  +    RV M         +         +    F  +TPT  N+G  R  +  SC
Sbjct: 114 YLETVED---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISC 170

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  + D++  I  A+  +  L+K  GG+    T +R +GA I G   ++ G++P +K+ 
Sbjct: 171 YLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLL 230

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   +     IPD+  +
Sbjct: 231 EDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQ 290

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +N    LFSP ++  ++     +  I  E  +  A+    K +  ISA  L++ +  
Sbjct: 291 LAKENKEMALFSPYDIKRVYGKDMSDISITEEYNKLLANPAIKKTY--ISARKLFQLIAE 348

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAV 599
           + FE+G+P++ F D  N R+P    G +  SNLC+EI   S+              E   
Sbjct: 349 LHFESGYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDIC 408

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGL 658
           CNLGSIN+    A    D    +  I T++R LD V   +        +K N  + A+GL
Sbjct: 409 CNLGSINIAEAMA----DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVGL 464

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G M     L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  
Sbjct: 465 GAMNLHGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYAD 524

Query: 719 GVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G +    +   A+ + +              +   W  L + ++T G+ N++ +A+APT 
Sbjct: 525 GSYFKQYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTG 584

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ +   + S+ P    + V+   +     V ++ +N+                     
Sbjct: 585 SISYLSSCTPSLQPVVAPVEVRKEGNLGRIYVPAYQINQ--------------------- 623

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                   ++       A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y
Sbjct: 624 --------ENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSY 675

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QA+ +   + YY+R R      +  L G +         D +S    +       ++ E
Sbjct: 676 IQAFKLKCASIYYVRVR------QEVLAGSEQY-------DEDSQLDMVDKNGLTDTNNE 722

Query: 950 CEVC 953
           C+ C
Sbjct: 723 CQSC 726


>gi|228476825|ref|ZP_04061470.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
 gi|228251399|gb|EEK10544.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
          Length = 719

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/715 (23%), Positives = 289/715 (40%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +       + +++  +     +   +   +   + +
Sbjct: 32  KEALRAFFLENVKPNSMAFNSITDKINYLIENDYIESEFI--GKYEPAFIEKLSAEIHSQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            F F+ ++     Y +Y L  N    E   ++   RV           EK A +  N + 
Sbjct: 90  KFRFQSFMAAYKFYQQYALKTNDG--ESYLESIEDRVLFNALYFADGDEKLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +       +I     E
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGKPYNYIDITAMYDE 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+        KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+
Sbjct: 328 LVANPNI--TKTKINARELETEISKLQQESGYPYIVNVDTANRHN--PIDGKIIMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +  F       +IR     L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSPDF-----GRSIRAMTCALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ D          
Sbjct: 499 TLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRIKELFD--GHFIPQAK 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +            
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ----------- 605

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E  I  + Y    + + + IP      + +A+++D   +I+  +   
Sbjct: 606 -------------EKKIGKIYYPANGL-STDTIP-----FYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|120402409|ref|YP_952238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955227|gb|ABM12232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
          Length = 698

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/815 (22%), Positives = 308/815 (37%), Gaps = 139/815 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++   DGTL+ F+  R+E  V  A   +                   ++ +D   + I +
Sbjct: 15  QVRRRDGTLVPFDIGRIEAAVSRAACEVACADPD------MPGTVA-VTVADALGSAI-A 66

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
               I+       V AR                   +A   ++   Y  Y  R+ E    
Sbjct: 67  PVEKIQD-----YVEARL-----------------GEAGLDDVARAYIIYRNRHAE---- 100

Query: 266 ARLLHESMMDFDLVYLANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
                        +  A  L   RD        + +L +RY  H   G   E       R
Sbjct: 101 -------------LRSAKALLGVRDELKLSLAAVTVLRERYLQHDERGHPTESTGEMMDR 147

Query: 324 VAMGLALKETEK-----EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            A  +A  E         + A +F   L    F+ ++PTL N+G+    LS C +  V D
Sbjct: 148 AARYVAAAEDRYLPGSSARWADQFATSLRRLEFLPNSPTLMNAGSDLGLLSGCVVLPVDD 207

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF  L   A + +  GG G  ++ +R  G  I  T G++ G + FL++ +  A  V
Sbjct: 208 SLRSIFSTLGHAAEVQRCGGGTGFAFSRLRPAGDRIASTGGRASGPVSFLELFDTAARVV 267

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           + GG+R+GA    L+  H D++EF+  +  + +   R    N +  + D FM+ V +   
Sbjct: 268 SLGGRRRGACMGVLDVSHPDIQEFVTAKTQSPE---RLSHFNLSVGVSDSFMRAVERGDV 324

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             L +P                              +   K+SAV L+  +       G 
Sbjct: 325 HRLVNPRTG---------------------------RTVAKVSAVELFDVICESAHACGD 357

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F D  N  +P   +G + ++N C E+ L  +      CNLGS+NL     + + D+
Sbjct: 358 PGLVFLDTVNRANPVPRLGRIEATNPCGEVPLLPNES----CNLGSLNLARMVTDGRIDW 413

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L      AVR LD+VID++ +  ++   +    R IGLG+MG    L  L IPY S +
Sbjct: 414 CRLRDVTALAVRFLDDVIDVSRYPFDELDAAGRATRKIGLGVMGLAEVLASLGIPYDSDD 473

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           AV +A   M  +   A   S +LA ERG + ++  S   +                    
Sbjct: 474 AVRLAGRIMGRVQRVAHETSEQLAAERGPFPAYPDSRLTRPR------------------ 515

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                               RN+   ++APT TI+ I G +  I+P +   Y ++ +   
Sbjct: 516 --------------------RNAQLTSVAPTGTISLIAGTTAGIEPMFAIAYTRAVVGRH 555

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              VN       ++R  + + +I+++    G  G    +P D++    TA EI P W + 
Sbjct: 556 LLEVNPCFDRMARRRGFYTDELITEIARSGGVRGYRGDLPADVRAAFPTAAEISPEWHLR 615

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             +  Q+ +D A S  + L E  +   +  IY  AW   +K     R  S          
Sbjct: 616 MQAAVQRHVDAAVSKTVNLPEAATADDVRAIYLSAWKAKVKGITVYRYGSRQ-------- 667

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
              G++ +     P      L     C     CE+
Sbjct: 668 ---GQVLSYAAPPPQVPHADLEFSGGCVGR-SCEM 698



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P        QV +R+G +  FD  +I  A+ +A   V          V   + +     
Sbjct: 5   TPASPSKWPTQVRRRDGTLVPFDIGRIEAAVSRAACEVACADPDMPGTVAVTVADALGSA 64

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +              +E IQD VE  L ++G   + R Y++YR   +++R+A+
Sbjct: 65  IA------------PVEKIQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAK 105


>gi|227510691|ref|ZP_03940740.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189812|gb|EEI69879.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 721

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/713 (21%), Positives = 290/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           + L    K+           L   +         +A  + +  + F +  L   LK ++D
Sbjct: 33  QALQAFLKQNVTPNLMTFDSLQDRFDYLIENHYYEAGFIKKYPISF-IEKLYQYLK-DQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N +   + ++F  RVA          E+ A+   + +   
Sbjct: 91  FHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEIIHQ 149

Query: 350 HFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G +   +  SCFL    DD+  I   +     L++  GG+G + + +R
Sbjct: 150 RYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 AAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V  +A   LFSP +V   + +     +I  E     
Sbjct: 270 NADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSPYDVEREYGVPFSYVDITKEYDHLV 329

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           A+        K+ A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 330 ANDKI--KKTKVKARDLETEISKLQQESGYPYIINIDTANREN--PIDGRIVMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +              +   CNLGS N+      N  +      ++ + VR L  V 
Sbjct: 386 LQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRALTFVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +  N    +IGLG MG  S     H+ Y SPE++E        +++ ++
Sbjct: 441 DHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLLNYWSL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+E    + +F+ S +  G +    +      + +        +   +   W  
Sbjct: 501 VASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFQGITIPTNEDWVA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LKK V   G+ + N +A+AP  +I+ I   + S+ P    +  +                
Sbjct: 561 LKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E+ I  + Y          + +D    + +A+++D   +I+  +  Q  +D
Sbjct: 606 ---------ESKIGKIYYPA------PYLSNDTMPYYTSAYDMDMRKVIDIYAAAQVHVD 650

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 651 QGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|255025076|ref|ZP_05297062.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J2-003]
          Length = 624

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 199/609 (32%), Positives = 304/609 (49%), Gaps = 43/609 (7%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +    +   P +    AR  L KL ++     +         +    Y        E 
Sbjct: 71  REAEARTDIHIPEWEHFAARLYLNKLYKKASKNRF-----YNDDDKYGSYVGLQESLGER 125

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           G+ +  + ++    DL+     +  E+D  F Y GL +L  RY    +  +  E+PQ  +
Sbjct: 126 GIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERW 185

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L   E +  + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D 
Sbjct: 186 LTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDS 245

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V+
Sbjct: 246 LQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVD 305

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W
Sbjct: 306 QLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEW 365

Query: 500 TLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            LF P EV      Y ++F           E YE      E    + + A+ + ++++  
Sbjct: 366 YLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVAD-ETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------------------ 594
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL       +     L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVAEE---GTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFP 722
           S W+ G + 
Sbjct: 602 SDWNTGEYF 610


>gi|194468107|ref|ZP_03074093.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
 gi|194452960|gb|EDX41858.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
          Length = 723

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 298/709 (42%), Gaps = 70/709 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L   +      + ++   +++    F +  L   LK  +
Sbjct: 34  KLALEDFIKNNVEPNTKNFSSLKERFQWLEENDYIEEGFMNKYSEAF-IEKLYEYLK-AQ 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + + +  RVAM         E+ A++  + +  
Sbjct: 92  NFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEIIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPTFLNVGRKRRGEFVSCFALQTTDDMNTIGRTINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 211 REAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V QNA   LFSP +V  ++ +     +I  E Y+ 
Sbjct: 271 ENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I+  +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 330 LVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDN--PINGKIVMSNLCSE 386

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N     + +    S NL +    N  +      +I+  +R L  + D  +
Sbjct: 387 IAQVQVPARVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS 
Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKR 752
           E+A+E +  +  F+ S +  G +    +      + ++       +       W  LK++
Sbjct: 507 EIAKERQETFHDFENSKYADGSYFEKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKNLKEK 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N   +A+AP  + + I   + S+ P    +  +                    
Sbjct: 567 VMKDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQ------------------- 607

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E MI  + Y          + +D    + +A+++D   +I++ +  Q+ IDQ+ S
Sbjct: 608 -----EKMIGKIYYPA------PYLSNDTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLS 656

Query: 873 LNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 MTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|227514023|ref|ZP_03944072.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087609|gb|EEI22921.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 723

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/717 (23%), Positives = 301/717 (41%), Gaps = 80/717 (11%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +          + ++   + +    F L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSVMERLNWLIENDYLEEDFIRQYTPAF-LDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGQTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++       +I  E 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGKPFSYVDITKE- 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      E    +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNL
Sbjct: 327 YDNLVANPE-ITKKKVNARELEDEISKLQQESGYPYIVNVDTVNKAN--PIEGTIVMSNL 383

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N+      N  +   L  ++R  +R L
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRGL 438

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            ++ D  +   +   K  N    ++GLG MG    L   HI Y SP A+E        ++
Sbjct: 439 THISDAESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLN 498

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +  + AS E+AQE+   +++F+ S +  G +       D     A V++  A     +  
Sbjct: 499 YWTLVASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPD 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +            
Sbjct: 559 DWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQ----------- 607

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E MI  + Y          + +D    + +A++ D   +I++ +  Q
Sbjct: 608 -------------EKMIGKVYYPA------PYLSNDTMPYYRSAYDTDMRSVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ+ S+ L++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 649 EHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|299782856|gb|ADJ40854.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 723

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/717 (23%), Positives = 301/717 (41%), Gaps = 80/717 (11%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +          + ++   + +    F L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSVMERLNWLIENDYLEEDFIRQYTPAF-LDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     + + +  RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYL-ENYIDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++       +I  E 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGKPFSYVDITKE- 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      E    +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNL
Sbjct: 327 YDNLVANPE-ITKKKVNARELEDEISKLQQESGYPYIVNVDTVNKAN--PIEGTIVMSNL 383

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N+      N  +   L  ++R  +R L
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIA-----NLMETPDLGRSVRAMMRGL 438

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            ++ D  +   +   K  N    ++GLG MG    L   HI Y SP A+E        ++
Sbjct: 439 THISDAESLTVVPSIKHGNDLSHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLN 498

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +  + AS E+AQE+   +++F+ S +  G +       D     A V++  A     +  
Sbjct: 499 YWTLVASNEIAQEKGEKFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPD 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W ELK+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +            
Sbjct: 559 DWQELKQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQ----------- 607

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E MI  + Y          + +D    + +A++ D   +I++ +  Q
Sbjct: 608 -------------EKMIGKVYYPA------PYLSNDTMPYYRSAYDTDMRSVIDTYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ+ S+ L++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 649 EHVDQSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|227513707|ref|ZP_03943756.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227522502|ref|ZP_03952551.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083026|gb|EEI18338.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227090324|gb|EEI25636.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
          Length = 721

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 156/713 (21%), Positives = 290/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           + L    K+           L   +         +A  + +  + F +  L   LK ++D
Sbjct: 33  QALQAFLKQNVTPNLMTFDSLQDRFDYLIENHYYEAGFIKKYPISF-IEKLYQYLK-DQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N +   + ++F  RVA          E+ A+   + +   
Sbjct: 91  FHFKSFMAAYKFYAQYALKTNDNDKYL-ESFLDRVAANALFFADGDEQLAMNLADEIIHQ 149

Query: 350 HFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G +   +  SCFL    DD+  I   +     L++  GG+G + + +R
Sbjct: 150 RYQPATPSFLNAGRQNRGEFVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 AAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V  +A   LFSP +V   + +     +I  E     
Sbjct: 270 NADEKIRLKTLSLGVTVPDKYYELVKADADMYLFSPYDVEREYGVPFSYVDITKEYDHLV 329

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           A+        K+ A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 330 ANDKI--KKTKVKARDLETEISKLQQESGYPYIINIDTANREN--PIDGRIVMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +              +   CNLGS N+      N  +      ++ + VR L  V 
Sbjct: 386 LQVQTPSTVDNEQHYIKLGKDISCNLGSTNIA-----NMMNATNFGHSVESMVRALTFVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +  N    +IGLG MG  S     H+ Y SPE++E        +++ ++
Sbjct: 441 DHSNIDVVPSIQNGNRESHSIGLGAMGLHSYFAKSHMHYGSPESIEFTSVYFMLLNYWSL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+E    + +F+ S +  G +    +      + +        +   +   W  
Sbjct: 501 VASNKIAKERHQTFDNFEKSKYADGTYFDKYLNHSYAPQSDKVKQLFHGITIPTNEDWVA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LKK V   G+ + N +A+AP  +I+ I   + S+ P    +  +                
Sbjct: 561 LKKAVMEDGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E+ I  + Y          + +D    + +A+++D   +I+  +  Q  +D
Sbjct: 606 ---------ESKIGKIYYPA------PYLSNDTMPYYTSAYDMDMRKVIDIYAAAQVHVD 650

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 651 QGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|283852533|ref|ZP_06369801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
 gi|283572141|gb|EFC20133.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
          Length = 743

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/643 (27%), Positives = 291/643 (45%), Gaps = 83/643 (12%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHF 351
           +L  RY +   +GS +E  +  F RVA  +A +E +        E  A  FY+L+    F
Sbjct: 22  VLAKRYLMKGPDGSPLEDVRGLFWRVAAAIAAEEAKYGNSPFAPEDLARRFYDLMVGMRF 81

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 82  LPNSPTLMNAGTPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 141

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   +
Sbjct: 142 ARVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFITCKERENE 201

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + + FM+ V +   + L  P +                         
Sbjct: 202 ----LQNFNISVALTERFMQAVEKGEDYDLIDPRD------------------------- 232

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V  + SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L 
Sbjct: 233 --KAVVGRQSAADVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLL 290

Query: 592 SSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                   CNLGS+NL       A +  D+  L  T+  AVR LDNVID + + +++   
Sbjct: 291 PYE----ACNLGSVNLAVFHDPAAPDGIDWAGLTETVHLAVRFLDNVIDASRYPLDQITD 346

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               +R IGLGLMGF   L+LLHIPY S EA+++A+  M+ I   + SAS  LA ERG +
Sbjct: 347 MVQANRKIGLGLMGFADLLYLLHIPYDSTEALKLAERIMDTIQGESKSASKALAAERGPF 406

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            ++  S++ +                                        RN+    IAP
Sbjct: 407 PAYPDSIFGKRNL----------------------------------GPYRNATTTTIAP 432

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + +  M G+  V  N   VN +K+   + ++++ ++   
Sbjct: 433 TGTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANVHFVNAMKEAGAYSDSLMEEV-TR 491

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLD 886
            GSI +I  +PD L+++  TA +I+P+W ++  +  QK+ D A S  +   ++ +   + 
Sbjct: 492 KGSIAHIGMLPDALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNDATQDDIR 551

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            IYR A+ +G K     R          T  G           
Sbjct: 552 EIYRLAYELGCKGVTVYRDGCKAGQVLCTGDGATPAPAKTQSK 594


>gi|257865183|ref|ZP_05644836.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871508|ref|ZP_05651161.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874805|ref|ZP_05654458.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257799117|gb|EEV28169.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805672|gb|EEV34494.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808971|gb|EEV37791.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 719

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/714 (22%), Positives = 291/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +           +       + ++   + +    F +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTLTFATAMDKINYLIENDYLEEEFIKKYRPAF-IEQLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 326 DNLVMNPRIRKTK-IRARDLENEISKLQQESGYPYIINIDTANRSN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +  E               CNLGS N++     N  D      ++R   R L 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++
Sbjct: 438 FVTDASDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+E+   + +F+ S +  G +  D I    + + E        +   +   
Sbjct: 498 WTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L + VK  G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y          + ++    + +A+++D   +I+  +  QK
Sbjct: 606 ------------EKKIGKIYYPA------PYLSNETIGYYKSAYDMDMRKVIDVYATAQK 647

Query: 866 WIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  S+ L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|227545164|ref|ZP_03975213.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300909161|ref|ZP_07126622.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
 gi|227184847|gb|EEI64918.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300893026|gb|EFK86385.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
          Length = 723

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 296/709 (41%), Gaps = 70/709 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L  E F    E             +  +  L + LK  +
Sbjct: 34  KLALEDFIKNNVEPNTKSFSSL-KERFQWLEENDYIEEEFMNKYSEAFIEKLYDYLK-TQ 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + + +  RVAM         E+ A++  + +  
Sbjct: 92  NFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEIIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 211 REAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V QNA   LFSP +V  ++ +     +I  E Y+ 
Sbjct: 271 ENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I+  +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 330 LVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDN--PINGKIVMSNLCSE 386

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N+    + +    S NL +    N  +      +I+  +R L  + D  +
Sbjct: 387 IAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS 
Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKR 752
           E+A+E +  +  F+ S +  G +    +      + ++       +       W +LK+ 
Sbjct: 507 EIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKEN 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N   +A+AP  + + I   + S+ P    +  +                    
Sbjct: 567 VMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQ------------------- 607

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E MI  + Y          + +D    + +A+++D   +I++ +  Q+ IDQ+ S
Sbjct: 608 -----EKMIGKIYYPA------PYLSNDTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLS 656

Query: 873 LNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 MTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|326204958|ref|ZP_08194810.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
 gi|325984887|gb|EGD45731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
          Length = 795

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/654 (26%), Positives = 286/654 (43%), Gaps = 82/654 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFY 343
                  +++L  RY     NG+ +E     F RVA  +         E        EFY
Sbjct: 1   MKLSDNAVKVLEKRYLEKDENGNLLEDCDGMFRRVAKAIASADAAYTDEKGLAAIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++++  F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  
Sbjct: 61  DMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRAKGSAVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             + +  +      + N +  I + FMK V  N  + L  P                   
Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMKAVEHNLEYELLDPKTKE--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          K++A  ++  ++ M ++ G P I F D  N  +    +G + S+N
Sbjct: 222 ------------PVAKLNAKEVFDIIVEMAWKNGEPGIIFLDRLNRDNVTPKLGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L         CNLGSINL     +     D++KL +T+R AVR LDNVI++N +
Sbjct: 270 PCGEQPLLPYE----ACNLGSINLYNMMDDSHKGLDFEKLENTVRKAVRFLDNVIEVNKY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  K     R IGLG+MG+   L  L + Y S  A+++AD+ M FIS  A+ AS  L
Sbjct: 326 PLPEIDKMTRGTRKIGLGVMGWADTLCALGLAYNSQAAIDLADKVMSFISDIAMKASQNL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G +  ++ S++DQ                                   K I +RN+
Sbjct: 386 AELKGVFPFYEDSIYDQ-----------------------------------KGIKVRNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
               IAPT T++ I GVS  I+P +   Y+++ M     V  + +         +    +
Sbjct: 411 TTTTIAPTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKGAALSGNFYSEEL 470

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
                  G++ N+  +P  +++I  TA ++ P W ++  +  Q+  D A S  +    + 
Sbjct: 471 MKKIARVGTVKNMNEVPVQVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHDA 530

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           +   +  ++  A+    K  T Y   SR    +    +KG +   +       N
Sbjct: 531 TTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKELQAGEN 584


>gi|94993747|ref|YP_601845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94547255|gb|ABF37301.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 726

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/761 (25%), Positives = 325/761 (42%), Gaps = 98/761 (12%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---- 290
           T +KKP  + H +      E   RY+EE V    +  + ++  L YL N+  YE+     
Sbjct: 15  TRFKKPDGSYHFDSD---KEAVRRYLEEHVSPNQMAFNSLEDKLAYLINEGYYEQAIFDA 71

Query: 291 ---------FAFEY---------LGLQILYDRYFLHI-NGS-RIEMPQAFFMRVAMGLAL 330
                    F + Y         +G    Y  Y L   +G   +E  +   +  A+ LA 
Sbjct: 72  YPNDLIKEAFHYAYQQGYRFLNLMGAMKFYQSYALKTLDGKHYLETFEDRAVMNALFLAD 131

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQE 389
            +   +    +  + +    F  +TPT  N+G  R  +  SC+L  V D++  I  A+  
Sbjct: 132 GD---QTFVFDVIDAILHRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAIST 188

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA  
Sbjct: 189 SLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGA 248

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H +V  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  
Sbjct: 249 VYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKR 308

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +     +  I  E  +  A+    K +  ISA   ++ +  + FE+G+P++ F D  N 
Sbjct: 309 AYGKDMSDISITEEYDKLLANPAIKKTY--ISARKFFQLIAELHFESGYPYLLFDDTVNK 366

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFD 617
           R+P    G +  SNLC+EI   S+              E   CNLGSIN+    A    D
Sbjct: 367 RNPHAKKGRIVMSNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----D 422

Query: 618 YDKLASTIRTAVRVLDNV---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                  I T++R LD V    D+NC      +  N  + A+GLG M     L   HI Y
Sbjct: 423 APHFEQLITTSIRALDRVSRLSDLNC--APSVETGNAANHAVGLGAMNLHGFLATNHIYY 480

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EAV+  D     ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ + 
Sbjct: 481 DTKEAVDFTDLFFHAMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQT 540

Query: 735 --------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +      +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P  
Sbjct: 541 AKVATLLQDYGFTLPTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVV 600

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + V+   S     V ++ +++                                     
Sbjct: 601 APVEVRKEGSLGRIYVPAYQIDQANY-----------------------------AYYER 631

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+E+ P  +I+  +  QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R 
Sbjct: 632 GAYEVGPKAIIDVVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRV 691

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           R      +  L G +       VT P +S  +     SC  
Sbjct: 692 R------QDVLAGSEQYDEDSLVTAPGASDETTTECHSCMI 726


>gi|195977667|ref|YP_002122911.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974372|gb|ACG61898.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit NrdE
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 724

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 183/765 (23%), Positives = 319/765 (41%), Gaps = 102/765 (13%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-- 292
           T +K+     H +      E   RY+EE V  + L    ++    YL     Y+++    
Sbjct: 14  TRFKRADGTYHFDSD---KEAVQRYLEEHVYPQSLSFDSLEEKWRYLVAHDYYDQEILKA 70

Query: 293 ---------FEY-----------LGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK 331
                    F Y           +G    Y  Y L   +GS+    + F  R  M     
Sbjct: 71  YSAECITEAFTYAYQQKFSFLSLMGAMKFYQSYALKTLDGSQY--LEHFEDRAVMNALFL 128

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQEN 390
                    +  + + S  F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +
Sbjct: 129 ANGDPDLVRDLIDQILSRRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTS 188

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+    T +R +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   
Sbjct: 189 LQLSKRGGGVALCLTNLREVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAV 248

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL   H ++  FLD ++   D++ R   +     IPD+  +   +N    LFSP ++  +
Sbjct: 249 YLNVHHPEILTFLDTKRENADEKIRIKSLALGVVIPDITFQLARENKDMALFSPYDIKRV 308

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           +     +  I  E Y+R            ISA  L++ +  + FE+G+P++ F D  N R
Sbjct: 309 YGKDMSDIAIT-EEYDRLVANPA-IKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKR 366

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDY 618
           +P    G +  SNLC+EI   S++             E   CNLGSIN+     +     
Sbjct: 367 NPHPQKGRIVMSNLCSEIAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAA--- 423

Query: 619 DKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                 I T++R LD+V   +        +K N  + A+GLG M     L   HI Y S 
Sbjct: 424 -GFEQLIATSIRALDHVSRASDVSCAPSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSA 482

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR---- 733
           EAV+  D     ++++A  AS +LA+E+GA++ F+ S +  G +    +   A+ +    
Sbjct: 483 EAVDFTDLFFHTMAYYAFKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKV 542

Query: 734 ----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +       S   W EL   ++  G+ N++ MA+APT +I+ +   + S+ P    +
Sbjct: 543 AALLERYGFRVPSVADWQELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPV 602

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            V+         V ++ +++                             D+       A+
Sbjct: 603 EVRKEGHLGRIYVPAYQISD-----------------------------DNYAYYERGAY 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           E+ P  +I   +  QK +DQA SL L++ D+ + + L+  Y  A+ +   + YY+R R  
Sbjct: 634 EVGPEPIINIVAAAQKHVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR-- 691

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               +  L+G +       V   +++           S   C+ C
Sbjct: 692 ----QDILEGSEQYEEDTIVALTDTNA----------SGEACQSC 722


>gi|322389172|ref|ZP_08062733.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
 gi|321144077|gb|EFX39494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
          Length = 719

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/707 (23%), Positives = 293/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E+ A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEEIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IR  VR L  V D + 
Sbjct: 385 ILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N      GLG MG  S L    I Y SPE+VE        +++  +  S 
Sbjct: 445 IVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S +  G +         +     V++    +   S   W EL+ +
Sbjct: 505 NIARERGVTFHNFEKSDYANGTYFDKYTTGAFVPKSDRVKELFKDIFIPSAEDWAELRAK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|222153354|ref|YP_002562531.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           uberis 0140J]
 gi|222114167|emb|CAR42680.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus uberis 0140J]
          Length = 719

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/712 (23%), Positives = 295/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + +++  + +   DF +  LA  +K E+
Sbjct: 32  KEALDAFFKENVIPNTKAFPSVTEKINFLLEHDYIESEFIKKYTFDF-IEELAALIKEEK 90

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E  A +    + +
Sbjct: 91  -FQFKSFMAAYKFYQQYALKTNDGEYYL-ESLEDRVMFNALYFADGNEDLAKDLAIEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   QN    LFSP +V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGLTVPDKFYELARQNEDMYLFSPYDVEREYGVAFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +     KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPK-ITKTKIRARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I        +N + E   +     CNLGS N+L    +  F       +I+   R L  V
Sbjct: 385 ILQVQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++  
Sbjct: 440 TDSSQIEAVPTVKNGNQQAHTFGLGAMGLHSFLAKNHIEYGSPESVEFTDIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFEKSKYADGSYFDKYVTGQFVPKSDLVKELFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEGRQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|227552560|ref|ZP_03982609.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257888212|ref|ZP_05667865.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257896900|ref|ZP_05676553.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|293378469|ref|ZP_06624632.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
 gi|227178309|gb|EEI59281.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257824266|gb|EEV51198.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257833465|gb|EEV59886.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|292642798|gb|EFF60945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
          Length = 719

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/714 (22%), Positives = 300/714 (42%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIEQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +R      I+  +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 326 DRLVANPNIRK-QKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNTLKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|13508063|ref|NP_110012.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pneumoniae M129]
 gi|2500208|sp|P78027|RIR1_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1674206|gb|AAB96160.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           pneumoniae M129]
          Length = 721

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/720 (24%), Positives = 308/720 (42%), Gaps = 72/720 (10%)

Query: 216 YAKVTARFLLEKLRR-EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           Y KV   F ++ L   E     + KP+    H  +    E     ++       +  +M 
Sbjct: 25  YTKVYGDFKMD-LHAVEAYIQEHVKPKTKVFHSTK----ERLDFLVKNDYYDENI-INMY 78

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            F+         Y   F +  ++G    Y+ Y L     +  + + +  RV M +     
Sbjct: 79  SFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGKWYL-ENYEDRVVMNVLFLAN 137

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               +A++    + +  F  +TPT  N+G  +  +  SC+L  + D++  I  A+     
Sbjct: 138 GNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNMESIGRAITTTLQ 197

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL
Sbjct: 198 LSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSFSYANQLGQRQGAGAVYL 257

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H DV +FLD ++   D++ R   ++    IPD+       N    LFSP +V + + 
Sbjct: 258 HAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMALFSPYDVYEEYG 317

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
               +  +    YE  A++   K F  I+A   ++ +  + FE+G+P+I F D  N R+ 
Sbjct: 318 KPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGYPYILFDDTVNRRNA 375

Query: 573 QQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDK 620
             +   +  SNLC+EI   S+  E               CNLGS+N+     +      +
Sbjct: 376 HPN--RIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLNIAKAMESG----PE 429

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            +  ++ A+  LD V  + N  T    +K N  + A+GLG M     L    I Y SPEA
Sbjct: 430 FSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHGFLATNQIYYNSPEA 489

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-----------L 728
           ++  +     +++HA  AS ELA E+G + +F+ + +  G +    I             
Sbjct: 490 IDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKYIKVEPDFWTPKTER 549

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  +   +R  W EL   ++  G+ NS+ +AIAPT +I+ +   + S+ P    
Sbjct: 550 VKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISYLSSCTPSLQPVVSP 609

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+         V ++ +N+                             D        A
Sbjct: 610 VEVRKEGRLGRIYVPAYQLNK-----------------------------DSYPFYKDGA 640

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I  A+  Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R 
Sbjct: 641 YELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQ 700


>gi|77414135|ref|ZP_00790301.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77159805|gb|EAO70950.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 722

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 182/748 (24%), Positives = 325/748 (43%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMAFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYAK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   ++                  CNLGSIN+     +   D++KL   I  ++R LD V
Sbjct: 384 IAQVNTGSQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRV 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KKSN  + A+GLG+M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKSNAANHAVGLGVMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+ P  +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 VDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDD 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +S               +C+ C
Sbjct: 705 MLDDFTSSDL------------EDCQSC 720


>gi|312864803|ref|ZP_07725034.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099930|gb|EFQ58143.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 719

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/712 (23%), Positives = 297/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + ++A  + +   +F +  LA DL+ E 
Sbjct: 32  KEALEAFFKENVLPNSMVFDSISQKINYLIENDYIEAEFIGKYKSEF-IESLAKDLQ-EA 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F+ ++     Y +Y L  N     + ++   RV           E  A +    + +
Sbjct: 90  DFHFQSFMAAYKFYQQYALKTNDGTAYL-ESIEDRVLFNALYFADGNEVLAQDLAREMIA 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILSFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVTVPDKFYELARKNEDMYLFSPYTVEKEYGVPYNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KISA  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKISARELETEISKLQQESGYPYVVNVDTANRSN--PIDGKIVMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++   A+  F       +I+   R L  V
Sbjct: 385 ILQVQKPSLINDAQEFVQMGTDISCNLGSTNIVNMMASPDF-----GRSIKAMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   K  N      GLG MG  S L   H+ Y SPE++E  D     +++  
Sbjct: 440 TDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSFLARHHMEYGSPESIEFTDIYFMLMNYWT 499

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDELAMNRTSRL-PWD 747
           +  S  +A+ER  ++  F+ S +  G +    +        A+V++  A +   +   W+
Sbjct: 500 LVESNAIARERGQSFVGFEKSKYADGTYFDKYVTGQFQPKSAKVKELFAKHFIPQAGDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++ V   G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ALRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHPIIQRIEERQEKKIGK-------- 611

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                             Y+  S  + + IP      + +A+++D   +I+  +   + +
Sbjct: 612 -----------------IYYPASGLSTDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  S+ L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSMTLFMRSELPQELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|257899643|ref|ZP_05679296.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|257837555|gb|EEV62629.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
          Length = 719

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 297/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GKSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|146318861|ref|YP_001198573.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 05ZYH33]
 gi|146321069|ref|YP_001200780.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 98HAH33]
 gi|253751942|ref|YP_003025083.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis SC84]
 gi|253753765|ref|YP_003026906.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis P1/7]
 gi|253755357|ref|YP_003028497.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis BM407]
 gi|145689667|gb|ABP90173.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           05ZYH33]
 gi|145691875|gb|ABP92380.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           98HAH33]
 gi|251816231|emb|CAZ51858.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis SC84]
 gi|251817821|emb|CAZ55574.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis BM407]
 gi|251820011|emb|CAR46181.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis P1/7]
 gi|292558518|gb|ADE31519.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           suis GZ1]
 gi|319758304|gb|ADV70246.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis JS14]
          Length = 719

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/711 (23%), Positives = 297/711 (41%), Gaps = 70/711 (9%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E +   + +       +   +  +      E  ++   L +   +F ++ +   L
Sbjct: 28  LHKDQEAVKAFFTENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           K +++F F  ++     Y++Y L  N     + ++   RV           E+ A+   N
Sbjct: 87  K-DQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGDEELALNLAN 144

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDIT-E 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 324 KYDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSN--PVDGKIIMSN 380

Query: 584 LCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LC+EI         N S E  ++    S NL +    N         ++RT  R L  V 
Sbjct: 381 LCSEILQVQTPSILNDSQEYLSMGTDVSCNLGSTNIVNLMKSPDFGRSVRTMTRALTYVT 440

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D +    +   +  N    +IGLG MG  S L    I Y S  AVE  +     +++  +
Sbjct: 441 DHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNYWTL 500

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDE 748
             S  +A+ER   + +F  S +  G +       D       V++    +   S   W E
Sbjct: 501 VESNNIARERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFEGIFIPSGQDWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++V   G+ + N +A+AP  +I+ I  VS SI P  Q +  +                
Sbjct: 561 LREKVMADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ--------------- 605

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    +   E IP      + +A+++D   +I+  +   + +D
Sbjct: 606 ---------EKKIGKIYYPAAGL-TTETIP-----FYKSAYDMDMRKVIDVYAAATEHVD 650

Query: 869 QAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  SL L+               ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 651 QGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|116333245|ref|YP_794772.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis ATCC 367]
 gi|116098592|gb|ABJ63741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus brevis ATCC 367]
          Length = 721

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/708 (23%), Positives = 289/708 (40%), Gaps = 70/708 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+           L   +     E  ++  ++      F +  L + LK  +D
Sbjct: 33  EALQAFLKENVIPNTKTFASLKERFDFLIAENYIEEAVVTAYPFSF-IEDLYDYLK-AQD 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  + +   + + F  RVAM         ++ A +  + +   
Sbjct: 91  FHFKSFMAAYKFYAQYALKTDDNEFYL-ENFIDRVAMNALDFGGGDQRLAHDLADEIIHQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL    DD+  I   +     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRSRRGELVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 GAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIVAFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +    +A   LFSP +V  ++       +I  E Y+  
Sbjct: 270 NADEKIRLKTLSLGITVPDKFYELCAADADMYLFSPYDVERIYGKPFSYVDITAE-YDNL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +I   +K+ A  L   +  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 329 VANPDIHK-KKMKARDLETDIGKLQQESGYPYIVNIDTANREN--PIDGRIVMSNLCSEI 385

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-C 640
                    N+  E   +    S NL +    N         ++ T VR L  V D +  
Sbjct: 386 MQVQTPSTVNNKQEYVKLGTDISCNLGSTNIVNLMSSPDFGHSVETMVRALTYVTDHSDI 445

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +K N     IGLG MG  S     H+ Y S +++         +++  + AS E
Sbjct: 446 DVVPSIQKGNQLGHTIGLGAMGLHSYFAKNHMMYGSKDSIAFTSVYFMLLNYWTLKASNE 505

Query: 701 LAQE-RGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRV 753
           +A+E    + +F  S +  G +       D     A+V++  A +   +   W ELK  V
Sbjct: 506 IAKERHETFHNFDKSAYADGRYFDRYTETDWRPTSAKVQELFANVWLPAPEDWAELKTAV 565

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ + N MA+AP  +I+ I   + S+ P    +  +                     
Sbjct: 566 MQDGLYHQNRMAVAPNGSISYINDTTASLHPIINRIEERQ-------------------- 605

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E  I  + Y          + +D    + +A++ D   +I+  +  QK +DQ  SL
Sbjct: 606 ----EKKIGKIYYPA------PYLSNDTMPYYKSAYDTDMRRVIDVYAAAQKHVDQGMSL 655

Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++                D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 656 TLFMRSTIPVGLYEWKDGRTDKMTTRDLSILRNYAFRKGIKSLYYVRT 703


>gi|300771014|ref|ZP_07080891.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762287|gb|EFK59106.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 701

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/732 (24%), Positives = 311/732 (42%), Gaps = 81/732 (11%)

Query: 216 YAKVTARFLL-----EKLRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    ++       L ++          Y        + ++    E     IE+   
Sbjct: 10  WILLNNEIMIKHDDEYSLHKDKEAVRAYFLEYVNKNTVFFYTLK----EKIDYLIEQNYY 65

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN--GSRIEMPQAFFM 322
                     F+ +    +  Y + F F+ ++     +  Y L  +     +E  +   +
Sbjct: 66  INF--YEWFTFEQMEEVFNFVYAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVV 123

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLY 381
            VA+ LA +E     +A+E+  +  +  +  +TPT  N+G +   +L SCFL  + D+L 
Sbjct: 124 AVALFLAREEG--VAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLN 181

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI  A+     L+   GG+  + + +R  G  I G  G++ GV+P +K+  DT    NQ 
Sbjct: 182 GIGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQL 241

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++    L
Sbjct: 242 GQRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYL 301

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P  V   +  Y  E ++    YE           +KI+A  L  K+     E+G+P+I
Sbjct: 302 IYPHTVMQEYGQYLDELDMD-LMYEELITNP-NIKKKKINARHLLVKIAQTQKESGYPYI 359

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLA 609
            FK+  N       +G V  SNLCTEI   S   +  +            CNLGS+N+  
Sbjct: 360 FFKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNIAT 419

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D  ++  T++TA+R L  V D+     +    K+N    ++GLG M     L 
Sbjct: 420 -----VMDNKRIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLA 474

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPI---- 723
              I Y S EA++ A+     ++++++ AS+E+A+E +  +   + S +  G +      
Sbjct: 475 KSFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYADGTYFDKYLN 534

Query: 724 -DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D +    +V++    M+  +   W +LK++VK  G+ ++  +AIAP  + + I   + S
Sbjct: 535 RDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATAS 594

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    + V+            +L N                               D 
Sbjct: 595 VMPIVDIIEVREYGDSTTYYPMPYLTN-------------------------------DN 623

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
                +A+++D M ++   S  Q+ IDQ  S  L+ +   S + L   Y  A  +GLK+ 
Sbjct: 624 YFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSL 683

Query: 901 YYLRSRSATSVE 912
           YY R+R +T  E
Sbjct: 684 YYTRTRKSTIDE 695


>gi|296876815|ref|ZP_06900863.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432317|gb|EFH18116.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 719

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/707 (23%), Positives = 293/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTKTFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IR  VR L  V D + 
Sbjct: 385 ILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N    + GLG MG  S L    I Y SPE+VE        +++  +  S 
Sbjct: 445 IVAVPTIDHGNKLAHSFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S +  G +         +     V++    +   S   W EL+ +
Sbjct: 505 NIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSAEDWAELRAK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|298529116|ref|ZP_07016519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510552|gb|EFI34455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 745

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/648 (25%), Positives = 286/648 (44%), Gaps = 83/648 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYN 344
                  +L  RY     +G  +E  +  F RVA  +A +E + ++ +         FY 
Sbjct: 15  LTPNAKTVLSKRYLRKGDDGQPLEDFKTMFWRVAASVAGEEDKYQESSYNSLDLGRSFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           LL    F+ ++PTL N+GT   QL++CF+  V D +  IF +++  A++ K  GG G  +
Sbjct: 75  LLVEGKFLPNSPTLMNAGTDLGQLAACFVLPVGDSMDEIFDSIKNAALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R   + +  T G + G + FLK+ N     V QGG R+GA    L   H D+ +F+ 
Sbjct: 135 SRLRPKDSRVGSTGGIASGPLSFLKIFNTATEQVKQGGTRRGANMGILRVDHPDIMDFIR 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G+     ++ N +  + + FM+ V   + ++L +P                    
Sbjct: 195 AKERDGE----LNNFNLSVALTEKFMQSVESGSDYSLTAPQ------------------- 231

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +   +++A  ++  ++   +E+G P I F D  N  +P   +G + S+N 
Sbjct: 232 --------NNQETERLNAREVFSLLVHKAWESGDPGIIFLDRINKDNPTPGLGEMESTNP 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           C E  L         CNLGSINL   +   A    D++ L   +  +VR LDNVID++ +
Sbjct: 284 CGEQPLLPYE----ACNLGSINLDRFYSPTAEGGIDWEGLREAVHLSVRFLDNVIDLSRY 339

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+  +  H  R IGLG+MGF   L  L + Y S   +++ ++ MEF+   + SAS  L
Sbjct: 340 PLERITEMVHKTRKIGLGVMGFADLLFQLRVAYDSHRGLQLGEKIMEFVQRESRSASRIL 399

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           AQERG +  ++ S++ +                                        RN+
Sbjct: 400 AQERGPFPEYEHSIYARQNL----------------------------------GPYRNA 425

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAM 820
               IAPT T++ I G S  I+P +   + +  + G+    VN  L   LK    + + +
Sbjct: 426 TTTTIAPTGTLSIIAGCSSGIEPIFALSFTRQVLDGERLLEVNPHLEEALKNTRSYSDKL 485

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           + D+    GSI  +E +  DL+ +  TA ++   + ++  +  QK+ D A S  + L  +
Sbjct: 486 MEDV-AKKGSIKQMEHLDQDLRDVFVTAMDVPAQYHLKMQAAFQKYTDNAVSKTVNLPFD 544

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            + + +  IY  A+ MG K     R         ST  G   + +   
Sbjct: 545 ATQEDVWQIYWMAYEMGCKGVTVYRDGCRAEQVLSTQDGEKARQDRAS 592


>gi|325571549|ref|ZP_08147049.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156025|gb|EGC68221.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
          Length = 719

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/714 (22%), Positives = 291/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +           +       + ++   + +    F +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTLTFATATDKINYLIENDYLEEEFIKKYRPAF-IEDLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKEYGVPFSYVDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 326 DNLVMNPRIRKTK-IRARDLENEISKLQQESGYPYIINIDTANRSN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +  E               CNLGS N++     N  D      ++R   R L 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIV-----NLMDSPDFGKSVRAMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++
Sbjct: 438 FVTDASDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+E+   + +F+ S +  G +  D I    + + E        +   +   
Sbjct: 498 WTLVESNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L + VK  G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WAALAQTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y          + ++    + +A+++D   +I+  +  QK
Sbjct: 606 ------------EKKIGKIYYPA------PYLSNETIGYYKSAYDMDMRKVIDVYATAQK 647

Query: 866 WIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  S+ L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|293570829|ref|ZP_06681876.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609097|gb|EFF38372.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 719

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 297/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|227537624|ref|ZP_03967673.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242510|gb|EEI92525.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 701

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/732 (24%), Positives = 311/732 (42%), Gaps = 81/732 (11%)

Query: 216 YAKVTARFLL-----EKLRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  +    ++       L ++          Y        + ++    E     IE+   
Sbjct: 10  WILLNNEIMIKHDDEYSLHKDKEAVRAYFLEYVNKNTVFFYTLK----EKIDYLIEQNYY 65

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN--GSRIEMPQAFFM 322
                     F+ +    +  Y + F F+ ++     +  Y L  +     +E  +   +
Sbjct: 66  INF--YEWFTFEQMEEVFNFVYAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVV 123

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLY 381
            VA+ LA +E     +A+E+  +  +  +  +TPT  N+G +   +L SCFL  + D+L 
Sbjct: 124 AVALFLAREEG--VAKAIEYAEIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLN 181

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI  A+     L+   GG+  + + +R  G  I G  G++ GV+P +K+  DT    NQ 
Sbjct: 182 GIGYAVDSAMKLSSIGGGVSFNISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQL 241

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++    L
Sbjct: 242 GQRPGAGAVYLNIFHSDIEEFLDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYL 301

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P  V   +  Y  E ++    YE           +KI+A  L  K+     E+G+P+I
Sbjct: 302 IYPHTVMQEYGQYLDELDMD-LMYEELITNP-NIKKKKINARHLLVKIAQTQKESGYPYI 359

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGSINLLA 609
            FK+  N       +G V  SNLCTEI   S   +  +            CNLGS+N+  
Sbjct: 360 FFKENANREHALNGLGKVKFSNLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNVAT 419

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D  ++  T++TA+R L  V D+     +    K+N    ++GLG M     L 
Sbjct: 420 -----VMDNKRIKETVKTAMRALTVVSDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLA 474

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPI---- 723
              I Y S EA++ A+     ++++++ AS+E+A+E +  +   + S +  G +      
Sbjct: 475 KSFIMYESDEALDFANTFFMMMNYYSLEASMEIAKERQRTFVGCEKSAYADGTYFDKYLS 534

Query: 724 -DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D +    +V++    M+  +   W +LK++VK  G+ ++  +AIAP  + + I   + S
Sbjct: 535 RDYMPKSDKVKELFEGMHIPTIEDWAQLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATAS 594

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    + V+            +L N                               D 
Sbjct: 595 VMPIVDIIEVREYGDSTTYYPMPYLTN-------------------------------DN 623

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
                +A+++D M ++   S  Q+ IDQ  S  L+ +   S + L   Y  A  +GLK+ 
Sbjct: 624 YFYFKSAYDMDQMKVLRLISVIQRHIDQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSL 683

Query: 901 YYLRSRSATSVE 912
           YY R+R +T  E
Sbjct: 684 YYTRTRKSTIDE 695


>gi|269958630|ref|YP_003328417.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
 gi|269848459|gb|ACZ49103.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
          Length = 618

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/677 (29%), Positives = 305/677 (45%), Gaps = 102/677 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD      G  +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 33  RDNNLTSFGKAVLSDRYLLDD-----EDYQQLFVRVS----QYYSDNDEHAQRLYDYMSK 83

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 84  LWFMPATPILSNGGTGRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 143

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  + GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 144 SIGEKVRSS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 202

Query: 469 T-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           T GD  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 203 TGGDPNRKALNIHHGVLLTDEFMRAVEQDKPWDLVSPKD--------------------- 241

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
                   V   + A  LW K+LT   ETG P++ F D  N   P  +      V  SNL
Sbjct: 242 ------RCVISTVRARDLWIKILTTRVETGEPYVVFVDTVNKHKPDIYKELGLEVKMSNL 295

Query: 585 CTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           CTEITL +  +      TA+C L S+NL  ++     +   +   +R    VL + I+  
Sbjct: 296 CTEITLATGEDHLGRSRTAICCLASLNL-EYYDMWSGEPLFVEDVMRFLDNVLTDFINKA 354

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              IE+A+ +    R+IG+G+MGF S L    +P+ S  A     +  E I   A   S 
Sbjct: 355 PPEIERARYAAMRERSIGVGVMGFHSFLQSKMVPFESFAASVWNKKIFEHIKRQADEVSR 414

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+G                           D +  N+                  R
Sbjct: 415 KLAMEKGPCP------------------------DAVDANKME----------------R 434

Query: 760 NSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L  + L ++
Sbjct: 435 FVHKLSIAPTASISIISGNTSPGIEPYAANVFTHKTLTGSFVVRNKFLQKLLASKGLDND 494

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N++L 
Sbjct: 495 QVWSSISTNEGSVQHLDFLTEQEKLVFRTAYEMDQRWIVEHSSDRAPYVCQAQSVNIFLP 554

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               K+ L  I+  AW  G+K+ YYLRS+S    +K  +  V G     P     +    
Sbjct: 555 AGVHKRYLHKIHFLAWKKGVKSLYYLRSKSVQKADK--VSHVHGGQAVSPQRQITNF--- 609

Query: 938 LGIPSSCTSDTECEVCQ 954
                      EC  CQ
Sbjct: 610 --------DYDECLACQ 618


>gi|320353411|ref|YP_004194750.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
 gi|320121913|gb|ADW17459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
          Length = 723

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/654 (24%), Positives = 277/654 (42%), Gaps = 87/654 (13%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYNLLS 347
                   +L  RY+L    G  +E  +    RV+  +A  +    + E  A  F+ ++ 
Sbjct: 9   QLTDTAETVLERRYYLKDAEGKPLENWETLCRRVSNAVAQVDLDQPDYEGLADRFFTMIY 68

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              F+ ++P L N+GT   QLS+CF+  V D + GIF +++  A++ K  GG G  ++ +
Sbjct: 69  YLDFLPNSPCLMNAGTDLGQLSACFVLPVEDSMDGIFTSIRNGALVHKTGGGTGYSFSRL 128

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   + +  T G + G + F  V +     + QGGKR+GA    L   H D+ EF+  ++
Sbjct: 129 RPKNSAVQSTQGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDILEFIVAKQ 188

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D+ R  + N +  I DLFM+ V  +  + L  P                       
Sbjct: 189 ----DQTRYTNFNFSVAITDLFMEAVKNDQEYDLIDPS---------------------- 222

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   + R + A  ++ K++ + +  G P + F D  N  +    +G   ++N C E
Sbjct: 223 -----NGDIIRTLRAREVFDKIVDLAWHNGEPGVLFIDAANRDNTTPQLGKFEATNPCGE 277

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             L         CNLGSINL  +  N + D+++L +T R AVR LDNVID N   I +  
Sbjct: 278 QWLLPYES----CNLGSINLGQYVKNGKVDWERLGATARLAVRFLDNVIDCNRFPIPEIA 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLG+MG    L  L +PY S E  + A E M F+   A +AS+ELA  +G 
Sbjct: 334 EMTQKTRKVGLGIMGLHDMLIQLELPYGSEEGRQAAAEVMAFVRTEAEAASIELATMKGP 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + ++                      DE      +R               RN+   +I 
Sbjct: 394 FPAY----------------------DERFNTYPAR---------------RNAALTSIQ 416

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T++ I   +   +P +  + +K+ M  D  ++ + L   + + + +  A + +    
Sbjct: 417 PTGTVSMIADCASGCEPYFSIVMIKNVMDNDRLLMVNKLFERIARAEGFYSAELMEKVAK 476

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLD-EPSGKKL 885
            G++     IP   ++I  TA +I P   I      QK  +D + S  + L    +   +
Sbjct: 477 SGTVIGHAAIPKRWQEIFRTAQDISPEQHIRMQGVLQKNGVDSSISKTINLPSSATQDDV 536

Query: 886 DFIYRQAWLMGLKTTYYLRSRS---------ATSVEKSTLKGVDGKLNAVPVTD 930
              Y   + +G K     R  S         A+S +K+ + G +G +    + D
Sbjct: 537 RTAYMLGFELGCKGLTVYRDGSRDHQVLNTVASSADKTAVAGSEGLVQKATLPD 590


>gi|288904914|ref|YP_003430136.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
 gi|288731640|emb|CBI13197.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
          Length = 719

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/707 (22%), Positives = 294/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + ++   + +   DF +  LA DL+  +
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDKINYLIDNDYIEPEFISKYTPDF-IESLAKDLQ-AQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N  +  + ++   R+           E+ A +    +  
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGKYYL-ESIEDRILFNALYFADGNEELARDLATEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +  SCFL +V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y++
Sbjct: 269 ENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAE-YDK 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 MVANP-NIVKTKIRARDLETEISKLQQESGYPYVVNIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           +        +N + E   +    S NL +    N  D      +I+   R L  V D  +
Sbjct: 385 VLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMDSPDFGRSIKAMTRALTFVSDTSS 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S 
Sbjct: 445 IEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+E +  +  F+ S +  G +         I     V++  A +   S   W +L+  
Sbjct: 505 HIARERQQTFVGFENSKYADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +                    
Sbjct: 565 VMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|163793808|ref|ZP_02187782.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
 gi|159180919|gb|EDP65436.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
          Length = 768

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/649 (25%), Positives = 271/649 (41%), Gaps = 86/649 (13%)

Query: 299 QILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCST 355
           QI   +Y L + G  +E  PQ  + RVA  LA  E   ++ + A  FY  +  + F+ + 
Sbjct: 10  QIWDMKYRLRVEGEAVEASPQDSWRRVATALAEAEAPKDRARWAERFYEAMEGYRFLPAG 69

Query: 356 PTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT     L +CF + T+PD + GIF +L+E A+  +  GG+G D++ +R  GA 
Sbjct: 70  RILAGAGTGRSVTLFNCFVMGTIPDSMGGIFESLKEAALTMQQGGGIGYDFSTLRPRGAP 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ V +     +   G R+GA+ A L   H D+E F++ ++    D 
Sbjct: 130 VKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATLRCDHPDIEAFVEAKR----DP 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R    N +  I D FM+ V  +  W L                               E
Sbjct: 186 SRLRMFNLSVLITDPFMEAVKTDGDWDLVF-----------------------------E 216

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
              +R + A ALW +++   ++   P + F D  N R+   +   + ++N C E  L   
Sbjct: 217 GAAYRTVKARALWDRIMQTTYDVAEPGVIFIDRINQRNNLHYCETISATNPCGEQPLPP- 275

Query: 594 SEETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 C LGS+NL         A+   D   LA  +  AVR++DNV+D++   +E    
Sbjct: 276 ---YGACLLGSVNLATLIARPFEADAALDETALAEIVPLAVRMMDNVVDVSRFPLEAQAA 332

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+ G   AL    + Y SPEAV   +  M  +  HA  AS++LA+E+G +
Sbjct: 333 EARGKRRIGLGVTGLADALIFCGLRYGSPEAVATTERWMSLLRRHAYRASIDLAREKGPF 392

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F    +  G                     + R   ++L++ +   G+RN+   +IAP
Sbjct: 393 PLFDAKPYLAG--------------------ESIRELDEDLREAIAEHGIRNALVTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+      S  ++P +   Y ++ +  D +      V++L  R L+ E    D    
Sbjct: 433 TGTISLFADNVSSGLEPVFSFTYDRTVLMPDGSKKTEE-VSDLAYR-LYRELKGPDAPLT 490

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
           D  +                A  + P   +   +  QK++D + S  +   E    +   
Sbjct: 491 DAFVH---------------AQSLAPSDHVVMQAAVQKYVDSSISKTINCPEDIDFEAFK 535

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
            +YRQA+  G K     R    T    +T +    +  A P     ++T
Sbjct: 536 SVYRQAYESGCKGCTTYRPNDVTGAVLATRREEPEQTAAEPQGSAETAT 584


>gi|293553989|ref|ZP_06674591.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601846|gb|EFF32096.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 719

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 297/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|148543560|ref|YP_001270930.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri DSM 20016]
 gi|184152967|ref|YP_001841308.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri JCM 1112]
 gi|227363480|ref|ZP_03847602.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|325681910|ref|ZP_08161428.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
 gi|148530594|gb|ABQ82593.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224311|dbj|BAG24828.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071494|gb|EEI09795.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|324978554|gb|EGC15503.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
          Length = 723

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 294/709 (41%), Gaps = 70/709 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L  E F    E             +  +  L + LK  +
Sbjct: 34  KLALEDFIKNNVEPNTKRFSSL-KERFQWLEENDYIEETFMNKYSEAFIEKLYDYLK-AQ 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + + +  RVAM         E+ A++  + +  
Sbjct: 92  NFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGDEELAMQLADEIIH 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N G  R  +  SCF     DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 211 REAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V QNA   LFSP +V  ++ +     +I  E Y  
Sbjct: 271 ENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKE-YNN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I+  +K++A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 330 LVANDDIRK-KKVNARDLEDEISKLQQESGYPYIINIDTENRDN--PINGKIVMSNLCSE 386

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N     + +    S NL +    N  +      +I+  +R L  + D  +
Sbjct: 387 IAQVQVPAQVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS 
Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKR 752
           E+A+E +  +  F+ S +  G +    +      + ++       +       W +LK+ 
Sbjct: 507 EIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKEN 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N   +A+AP  + + I   + S+ P    +  +                    
Sbjct: 567 VMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQ------------------- 607

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E MI  + Y          + +D    + +A+++D   +I++ +  Q+ IDQ+ S
Sbjct: 608 -----EKMIGKIYYPA------PYLSNDTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLS 656

Query: 873 LNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 MTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|289746859|ref|ZP_06506237.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
 gi|289687387|gb|EFD54875.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
          Length = 783

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/703 (24%), Positives = 284/703 (40%), Gaps = 82/703 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  +
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKD 680


>gi|15901044|ref|NP_345648.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TIGR4]
 gi|15903109|ref|NP_358659.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae R6]
 gi|111657124|ref|ZP_01407909.1| hypothetical protein SpneT_02001650 [Streptococcus pneumoniae
           TIGR4]
 gi|116516073|ref|YP_816516.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae D39]
 gi|148985788|ref|ZP_01818916.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990436|ref|ZP_01821594.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|148994531|ref|ZP_01823711.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|148999043|ref|ZP_01826475.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|149004131|ref|ZP_01828934.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|149008158|ref|ZP_01831677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149013340|ref|ZP_01834071.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026428|ref|ZP_01836565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483242|ref|ZP_02708194.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486505|ref|ZP_02711013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489009|ref|ZP_02713208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|168577271|ref|ZP_02723065.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|221231889|ref|YP_002511041.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|225856855|ref|YP_002738366.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae P1031]
 gi|225858967|ref|YP_002740477.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 70585]
 gi|225860978|ref|YP_002742487.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237649544|ref|ZP_04523796.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822454|ref|ZP_04598299.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229750|ref|ZP_06963431.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255395|ref|ZP_06978981.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502820|ref|YP_003724760.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067833|ref|YP_003876799.1| ribonucleotide reductase subunit alpha [Streptococcus pneumoniae
           AP200]
 gi|307127226|ref|YP_003879257.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 670-6B]
 gi|14972660|gb|AAK75288.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458688|gb|AAK99869.1| Ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           pneumoniae R6]
 gi|116076649|gb|ABJ54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae D39]
 gi|147755113|gb|EDK62168.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|147757864|gb|EDK64874.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760397|gb|EDK67376.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762930|gb|EDK69877.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922092|gb|EDK73215.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924288|gb|EDK75382.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|147927201|gb|EDK78237.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929259|gb|EDK80260.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043335|gb|EDT51381.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570440|gb|EDT90968.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572571|gb|EDT93099.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|183577174|gb|EDT97702.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|220674349|emb|CAR68895.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae ATCC 700669]
 gi|225721006|gb|ACO16860.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 70585]
 gi|225725183|gb|ACO21035.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae P1031]
 gi|225727917|gb|ACO23768.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238415|gb|ADI69546.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301794278|emb|CBW36699.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV104]
 gi|301800115|emb|CBW32716.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae OXC141]
 gi|306409370|gb|ADM84797.1| Ribonucleotide reductase, alpha subunit [Streptococcus pneumoniae
           AP200]
 gi|306484288|gb|ADM91157.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 670-6B]
 gi|327389422|gb|EGE87767.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA04375]
 gi|332073522|gb|EGI84001.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17570]
 gi|332074794|gb|EGI85266.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41301]
 gi|332075111|gb|EGI85582.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17545]
 gi|332200631|gb|EGJ14703.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41317]
 gi|332201650|gb|EGJ15720.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47368]
 gi|332203033|gb|EGJ17101.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47901]
          Length = 719

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|257885401|ref|ZP_05665054.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257821257|gb|EEV48387.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 719

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 297/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPAAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|254455714|ref|ZP_05069143.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082716|gb|EDZ60142.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 645

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/732 (29%), Positives = 316/732 (43%), Gaps = 106/732 (14%)

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND------LKYERDFAFE 294
            K     ++    EY  + + E    +      ++ +     ND      +   +D    
Sbjct: 2   NKILSQALKKAVSEYSPK-VNEVQNDKRPDLFSLNNETELFQNDKGIIIKIDRSKDANLT 60

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
             G   L DRY  H      E  Q  F RVA   A    +    A   YN +S+  FM +
Sbjct: 61  DFGKATLKDRYLGHN-----ESFQDLFARVASSYA----DDNLHAQRIYNYISNLWFMPA 111

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R +G  I
Sbjct: 112 TPVLSNGGTKRGLPISCFLNEASDSLGGILDLWSENVWLAAKGGGIGSYWGNLRSIGEKI 171

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDR 473
               GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+++R+ T GD  
Sbjct: 172 GKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIDHPEIEEFIEMRRPTGGDPN 230

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           R+  +++    + D FM+ V  +  W L SP +                           
Sbjct: 231 RKALNLHHGVLVSDAFMRAVETDEQWALKSPADG-------------------------- 264

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEITL 590
             + + ISA  LW ++LT   ETG P+I + D  N   PQ H      V +SNLC+EITL
Sbjct: 265 -TIQQTISARNLWIRLLTARIETGEPYIIYIDTVNRLIPQHHKLANLTVKTSNLCSEITL 323

Query: 591 NS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            +       + TAVC L S+NL  +    + D D +   +R    VL + I+      + 
Sbjct: 324 PTGIDKDGHDRTAVCCLSSLNLEKY-DEWKDDPDMIGDVMRFLDNVLSDFINKAPDQFKD 382

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK S    R++GLG+MGF S L    IP  S  A     +  + I      AS +LA+ER
Sbjct: 383 AKYSAGRERSVGLGVMGFHSFLQKNRIPLESVMAKSWNKKIFKQIDAQVNQASKDLAEER 442

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA        + +                                        R SN  A
Sbjct: 443 GACPDAAEYGYQE----------------------------------------RFSNKTA 462

Query: 766 IAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPTA+I+ IC G S  ++P   N Y    +SG F V N +L   L+     D+   S +
Sbjct: 463 IAPTASISIICGGASPGVEPIAANSYTHKTLSGSFNVRNRYLEEILESHGKNDDETWSTI 522

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             + GS+ +++ + D  K +  TAFE++  W+IE +  R  +I QAQS+NL+L     KK
Sbjct: 523 TTNQGSVSHLDFLTDLEKDVFKTAFELNQNWIIELSGDRTPFISQAQSVNLFLPADVHKK 582

Query: 885 -LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            L  I+  AW  GLK+ YY RS+S    E          +N    TD  ++ +      +
Sbjct: 583 ELHKIHFDAWKKGLKSLYYCRSKSIQRAE---------NINDAKSTDIMANVYKNKATKT 633

Query: 944 CT-SDTECEVCQ 954
                 EC  CQ
Sbjct: 634 EEPEYEECLSCQ 645


>gi|225854652|ref|YP_002736164.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae JJA]
 gi|225723895|gb|ACO19748.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae JJA]
          Length = 719

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWT 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|189184363|ref|YP_001938148.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181134|dbj|BAG40914.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 604

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 212/686 (30%), Positives = 313/686 (45%), Gaps = 98/686 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                +  ER+          L DRY L       E  Q   +R+A   A    + +  A
Sbjct: 6   KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S   F+ +TP L N GT      SCF+  V D LYGI     EN  LA   GG
Sbjct: 57  QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLYGIVNTWIENVWLASRGGG 116

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   I   NG S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEI 175

Query: 460 EEFLDLRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R++TG D  R   +++    I D FM  V +N  W L SP +            
Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDD----------- 224

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQH 575
                           ++   + A  LW K+LT   ETG P+I F D  N       Q+ 
Sbjct: 225 ----------------RIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268

Query: 576 VGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
              V +SNLC+EITL +  +      TAVC L S+NL  +F   Q +   +   IR    
Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQSNEHFIPDIIRFLDN 327

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL++ I+    T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I
Sbjct: 328 VLEDFINKAPDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHI 387

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
                + SV LA+ERGA                                       D  K
Sbjct: 388 KLQTDNMSVVLAKERGAC-------------------------------------IDAQK 410

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
             ++    R S   A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   
Sbjct: 411 CNIQE---RFSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKL 467

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+ + L ++ + S +  H+GS+ ++  + D  K+++ TA+EID  WLIE A+ R ++I Q
Sbjct: 468 LESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQ 527

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +QSLN++L     K+ L  I+  AW   +K+ YY RS S    EK +        + V +
Sbjct: 528 SQSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTI 579

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +    T    + +S  +D EC  CQ
Sbjct: 580 DELAKLTDKEQLATS-NNDDECLACQ 604


>gi|322391985|ref|ZP_08065449.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
 gi|321145211|gb|EFX40608.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
          Length = 719

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNSMVFDSITDKINYLIEHNYIETAFIKKYRPEF-LEELYQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REGGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     +++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGTYFDKYVTGEFVPKSDRIKELFKNVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPQGLYEWKSENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|229823056|ref|ZP_04449125.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
 gi|229787495|gb|EEP23609.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
          Length = 725

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 300/714 (42%), Gaps = 87/714 (12%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
                +  P     + ++            + ++   + +  M+F +  L +   Y+  F
Sbjct: 41  AYFLEHVNPNTVFFYSLEEKINYLVD---NDFIEREFIEKYPMEF-IKELISS-TYKMKF 95

Query: 292 AF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F  ++     Y +Y L  N     +E  +    R+A          ++ AV   + + S
Sbjct: 96  RFKSFMSAFKFYTQYALRTNDGARYLERYED---RIAFCALFLADGDQELAVRLRDEMIS 152

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +L SCFL  V DD+  I   +     L++  GG+G + + +
Sbjct: 153 QRYQPATPTFLNAGRKRRGELVSCFLIQVSDDMNSIGRTINSALQLSRIGGGVGVNLSNL 212

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K
Sbjct: 213 RAAGDPIKKIENASSGVVPVMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKK 272

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   ++    LFSP +V  ++       +I  E Y+ 
Sbjct: 273 ENADEKVRVKTLSLGVVVPDKFYELAAKDEPMYLFSPYDVERIYGRPFAYVDIT-EEYDN 331

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +  EI+  + ISA  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 332 LVNNPEIRKSK-ISARDLENEISKLQQESGYPYIVNIDTANRAN--PIDGTITMSNLCSE 388

Query: 588 ITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N+     +  F     AS++ TAVR L  V
Sbjct: 389 ILQVQRPSHINNRQEFEVLGTDISCNLGSTNIPNMIESPDF-----ASSVETAVRALTYV 443

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   K  N     IGLG MG  +   +  + Y SPE+VE+ +     ++++ 
Sbjct: 444 TDHSNIEAVPTVKHGNDLAHTIGLGGMGLHTLFAINQMEYGSPESVELTEAYFYALNYYT 503

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWD 747
           + AS ++A+ER  ++ +F+ S +  G +    I    +V  E      S+        W 
Sbjct: 504 LVASNKIAKERGKSFDNFENSKYATGEYFDAYIQAPFQVTSEKVAAIMSKVALPTADDWR 563

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ + N +AIAPT +I+ +   S S+ P  + +  +       T       
Sbjct: 564 ALKEAVAASGLYHQNRLAIAPTGSISYVNETSASLHPITRLIEERQEKKTGKT------- 616

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                             Y+   + + E +P      + +A++ D   +I+  +  QK I
Sbjct: 617 ------------------YYPAPMLSNETLP-----YYKSAYDTDMRKVIDVYAAAQKHI 653

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                ++ + + L+ +   AW  G+K+ YY+R+
Sbjct: 654 DQGMSLTLFMRSELPEGMYEWKEGRTNKMTTRDLNILRHYAWKKGIKSIYYVRT 707


>gi|307709352|ref|ZP_07645810.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
 gi|307619935|gb|EFN99053.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
          Length = 719

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 295/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +      +  ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEQNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|308178759|ref|YP_003918165.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307746222|emb|CBT77194.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 721

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/650 (25%), Positives = 273/650 (42%), Gaps = 65/650 (10%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            +LG    +  Y L        + + F  RVA          E       + + S  F  
Sbjct: 108 TFLGAFKFFTSYALRTFDGTTYL-ENFGERVAATALFLGQGNETLTTSLADEMISGRFQP 166

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  +  +L SCFL  + D+L  I   +     L+K  GG+    T +R  GA
Sbjct: 167 ATPTFLNAGKAQRGELVSCFLLRLEDNLESIGRGVNSALQLSKRGGGVALLLTNLRETGA 226

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 227 PIKQIQNQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADE 286

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  K   +N    LFSP +V+  +     +  +  ++Y+      
Sbjct: 287 KVRIKTLSLGVVIPDVTFKLAKENRDMHLFSPYDVAREYGKPLSDLSV-NDHYDELVANP 345

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            I+    ISA   ++ +  + FE+G+P++ F+D  N  +     G V+ SNLC+EI   +
Sbjct: 346 RIRK-TTISAREFFKTLAELQFESGYPYVLFEDTVNRAN--PLAGHVNMSNLCSEILQVN 402

Query: 593 SSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           +                  CNLGS+N+ A       D     +TI TAVR L +V D   
Sbjct: 403 TPSTLDTAGGYTKIGNDISCNLGSLNIAA-----AMDSPDFGATIETAVRALTSVSDQTD 457

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N+   AIGLG M     L    I Y S E ++  D     +++HA+  S 
Sbjct: 458 IDAVPSIAAGNNASHAIGLGQMNLHGFLASQRIRYGSEEGIDFTDIYFLTVTYHALRVSN 517

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELK 750
           ++A ER   ++ F  S +  G +    I          +A +  ++ +   +R  W  L+
Sbjct: 518 QIAIERGTTFAGFGTSAYADGSYFDKYIERDWLPATERVAALFSQVGIAIPTREDWQALR 577

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           K V   G+ N+   AI PT +I+ +   + SI P    + ++                  
Sbjct: 578 KSVMAHGIYNAYLQAIPPTGSISYVNNATASIHPIAAKIEIRK----------------- 620

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  +  L Y          + D   +    A+EI    +I++ +   + +DQ 
Sbjct: 621 -------EGKLGRLYYPA------PHMTDANIEFFEDAYEIGYEKIIDTYAAATRHVDQG 667

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            SL L+  D  + + ++     AW  G+KT YY+R R    +E + ++  
Sbjct: 668 LSLTLFFRDSATTRDINKAQIYAWRAGIKTLYYIRLRQPA-LEGTEIENC 716


>gi|312867246|ref|ZP_07727456.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
 gi|311097375|gb|EFQ55609.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
          Length = 719

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/707 (23%), Positives = 292/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IR  VR L  V D + 
Sbjct: 385 ILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N      GLG MG  S L    I Y SPE++E        +++  +  S 
Sbjct: 445 IVAVPTIDHGNKLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S +  G +         +     V++    +   S   W EL+ +
Sbjct: 505 NIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSAEDWAELRAK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332686051|ref|YP_004455825.1| ribonucleotide reductase of class Ib (aerobic), subunit alpha
           [Melissococcus plutonius ATCC 35311]
 gi|332370060|dbj|BAK21016.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 720

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 300/712 (42%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + ++   +H+  M F +  L   L  E+
Sbjct: 32  KEALEAFFKENVLPNTKIFPSIEAKINFLIENDYLEVDFIHKYSMSF-IESLYTFLM-EQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ ++     Y +Y L  N   + + +++  RVA          E+ A+   + +  
Sbjct: 90  KFQFQSFMAAYKFYSQYALKTNDGTMYL-ESYEDRVAFNALYFADGNEELAITLADEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGKKRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   A I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 209 REASAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIERFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +    N    LFSP  V   + +     +I  E Y++
Sbjct: 269 ENADEKIRVKTLSLGILIPDKFYELTCNNEEMYLFSPYSVEKEYGIPFSYVDITKE-YDQ 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +  +I  ++ I+A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVENPKIHKYK-INARELENEISKLQQESGYPYVINIDTANKNN--PVDGKIVMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +              E   CNLGS N++    +  F       ++    R L  +
Sbjct: 385 ILQVQTPSILNDKQEYEVLGEDISCNLGSTNIVNLMESPDF-----GKSVCAMTRALTYI 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   +  N  +  IGLG MG  + L    I Y S E++E        +++  
Sbjct: 440 TDSSFIEVVPSIQNGNQHNHTIGLGAMGLHTFLAKNQITYGSKESIEFTTIYFMLLNYWT 499

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWD 747
           +  S ++A+E +  +  F+ S +  G +       D +   A+++     +   +   W 
Sbjct: 500 LVESNKIAKERQQVFHRFEYSDYADGSYFSKYLTGDFLPKSAKIKGLFKDIFIPAVEDWQ 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+  V+  G+ + N +A+AP  +I+ I   S S+ P  Q +  +               
Sbjct: 560 QLRDAVQKDGLYHQNRLAVAPNGSISYINDTSASLHPITQLIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E     + Y   S+ N   IP      + +A+++D   +I+  +  Q+ I
Sbjct: 606 ----------EKKTGKIYYPAPSLSNT-TIP-----YYTSAYDMDMRKVIDVYAAAQQHI 649

Query: 868 DQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGMSLTLFMRSEIPEGLYEWKKTTKQTTRDLTILRHYAFNKGIKSIYYVRT 701


>gi|108798058|ref|YP_638255.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119867154|ref|YP_937106.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126433719|ref|YP_001069410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
 gi|108768477|gb|ABG07199.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119693243|gb|ABL90316.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126233519|gb|ABN96919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/776 (23%), Positives = 295/776 (38%), Gaps = 130/776 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++   DGTL+ F++ R+E  V  A                                    
Sbjct: 9   RVRRRDGTLVPFDAGRIEAAVLRA------------------------------------ 32

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     AR + + L           P  A    +Q        R  E G+ 
Sbjct: 33  AREVACDDPDMPGAVARTVADTL----------GPGTADVETIQDFVE---ARLGEAGLD 79

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
                  +   D   L  A  L   RD        + +L +RY L    G  +E      
Sbjct: 80  DVARAYIVYRRDRADLRAAKALLGVRDELKLSLAAVTVLRERYLLRDQRGRPVESTGEMM 139

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E   E     +    F   L    F+ ++PTL N+GT    LS CF+  V
Sbjct: 140 DRAARCVAAAEDAYEPGSSAEWTDRFSRGLRDLEFLPNSPTLMNAGTDLGLLSGCFVLPV 199

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A + +  GG G  ++ +R  G  I  T G + G +PF+ + +  A 
Sbjct: 200 EDSLRSIFATLAKAAEIQRAGGGTGFSFSRIRPDGDPITTTTGSACGPVPFVGLFDAAAQ 259

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +     +    N +  + D FM+ V   
Sbjct: 260 VVSLGGRRRGACMAVLDVSHPDIYDFIASKSGS---TAKLPHFNLSIGVGDAFMRAVESG 316

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                                  ++ A  L+  +       
Sbjct: 317 GMHRLVNPRTGK---------------------------TAARVRADELFAAICEAANHG 349

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGS+NL      ++ 
Sbjct: 350 GDPGLVFLDTINRANPVPQRGRIEATNPCGEVPLLPYES----CNLGSVNLTRMLTGDEV 405

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ +L +    AVR  D+VID++ +   +  ++    R IGLG+MG    L  L IPY S
Sbjct: 406 DWTRLTAVTEMAVRFFDDVIDVSRYPFAELGEATRATRKIGLGVMGLAEMLARLGIPYDS 465

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA+ + D  M  I   A  AS  LA++RG++ +F  S                      
Sbjct: 466 EEALRLTDRVMRHIQRAAHRASRRLAEDRGSFPAFPDSR--------------------- 504

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                           V++   RN+   ++APT TI+ I G +  I+P +   Y ++ + 
Sbjct: 505 ---------------LVRSGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAYTRAILG 549

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                VN       + R  + + +I+++    G +     +P +++    TA EI P W 
Sbjct: 550 RHLLEVNPTFDRLARDRGFYRDELITEI-AERGGVRRCPSLPAEVRSAFPTATEISPDWH 608

Query: 857 IESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +   +  Q+ +D A S  + L    +   +  IY +AW   +K     R  S    
Sbjct: 609 LRMQAVVQRHVDAAVSKTVNLPSTATPADVRDIYLKAWKAKVKGVTVYRYGSREDQ 664



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             +V +R+G +  FD  +I  A+++A   V          V   + +             
Sbjct: 7   PTRVRRRDGTLVPFDAGRIEAAVLRAAREVACDDPDMPGAVARTVADTL----------- 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                  +E IQD VE  L ++G   + R Y++YR +R+D+RAA+
Sbjct: 56  -GPGTADVETIQDFVEARLGEAGLDDVARAYIVYRRDRADLRAAK 99


>gi|254418479|ref|ZP_05032203.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
 gi|196184656|gb|EDX79632.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
          Length = 629

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/683 (30%), Positives = 312/683 (45%), Gaps = 104/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RV+       ++    A   Y+ 
Sbjct: 37  DRSRDALLTDFGKKTLEDRYLLAG-----ESYQDMFARVSTAF----SDDADHAQRLYDY 87

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W 
Sbjct: 88  MSRLWFMPATPVLSNGGADRGLPISCFLNAVGDSLDGIQSVWNENVALASNGGGIGTYWG 147

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +    GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 148 GVRSIGEKVK-GAGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEI 206

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    + D FM+ V   A + L SP +                   
Sbjct: 207 RKPSGDFNRKSLNLHHGVNVTDEFMEAVKTGATFDLKSPKDG------------------ 248

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQHVG-VVHSS 582
                     V + + A +LW K+L +  +TG P++ F D  N      Q+ +G  V  S
Sbjct: 249 ---------AVIKTVDARSLWTKLLDIRMQTGEPYMIFSDTVNRQMAPHQRDLGLKVKQS 299

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC EI L++  +      TAVC L S+N     A    ++ +    I   +R LDNV  
Sbjct: 300 NLCAEIMLHTGRDHLGVDRTAVCCLSSVN-----AETFLEWREEPRFIEDIMRFLDNVLE 354

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             I      ++ A  S    R++GLGLMGF S L    + + S  A        + +   
Sbjct: 355 DFIRRAPPEMKAAVYSAKRERSVGLGLMGFHSFLQGQGVAFESAMAKSWNMRLFKHLRRE 414

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS  LA+E+G                                          L    
Sbjct: 415 ADKASRLLAEEKGPC----------------------------------------LDAEE 434

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           + +  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L +
Sbjct: 435 RGVMERFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLDE 494

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +  EA+ + +  H+GS+ +++ + +D K I+ TAFE+D  W++E A+ R   I QAQS
Sbjct: 495 KGINTEAVWNSILEHEGSVQHLDALNEDEKGIYKTAFELDQRWVVELAADRAPEICQAQS 554

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++  AW  G+K+ YYLRS+S   V+++   G + K  AV   DP
Sbjct: 555 LNLFIPGDVNKWDLHMLHWSAWERGVKSLYYLRSKS---VQRAAFAGAEDKAEAV--IDP 609

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
           N       +P   T   EC  CQ
Sbjct: 610 NQP-DLFSMPK--TDYDECLACQ 629


>gi|116493226|ref|YP_804961.1| ribonucleotide-diphosphate reductase subunit alpha [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103376|gb|ABJ68519.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 721

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/714 (23%), Positives = 296/714 (41%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE L    K+  +A   +   L   +     E+ ++A L+ E   DF +  L + LK ++
Sbjct: 32  REALAAFLKENVQANTMQFDSLRERFDYLLKEDYIEAALVEEYSFDF-IEKLYDFLK-QQ 89

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F+ ++     Y +Y L  N +   + + F  RVAM         E+ A+   + +  
Sbjct: 90  DFHFQSFMAAYKFYAQYALKTNNNEYYL-ENFIDRVAMNALYFADGNEELAMNIADEIIH 148

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCFL    DD+  I   +     L+K  GG+G + T +
Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   +  +    LFSP  V  ++       +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYDLIKHDEDMYLFSPYSVEKVYGEPYAYVDITKE-YDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 IK F+ + A  +  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 MVKNPAIKKFK-VKARNIENEISKLQQESGYPYIVNVDTANREN--PIYGKIVMSNLCSE 384

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGS N++       F       ++ T VR L  V
Sbjct: 385 IMQVQTPSVIDNKQNYTKLGTDISCNLGSTNIVNMMQTPHF-----GKSVETMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   +  N     IGLG MG    L   H+ Y   +++E        +++  
Sbjct: 440 TDHSDIDVVPSIQNGNALAHTIGLGAMGLHGYLAKNHLYYGEADSIEFTSVYFMLLNYWT 499

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           + AS ++A+E    + +F  S +  G +    +      +          +   S   W 
Sbjct: 500 LKASNQIAKEKNQVFHNFDKSKYADGSYFDKYVENDFGPKSNRVKELFNGIEIPSVEDWK 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK  V   G+ + N MA+APT +I+ I   + S+ P    +  +               
Sbjct: 560 QLKADVMADGLYHQNRMAVAPTGSISYINDATASLQPIVNKIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + +          + +D  K + +A++ID   +I+  +  Q+ +
Sbjct: 606 ----------EKKIGKIYFPA------PYLSNDTLKYYQSAYDIDMRKVIDIYAAAQQHV 649

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  S+  ++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 650 DQGMSMTFFMRSTIPAGIYDWKEGRTDKMTTRDLNILRNYAHHEGIKSIYYVRT 703


>gi|182684088|ref|YP_001835835.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|303255567|ref|ZP_07341619.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|303260587|ref|ZP_07346553.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|303262721|ref|ZP_07348660.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265255|ref|ZP_07351166.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
 gi|303267602|ref|ZP_07353444.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|303269941|ref|ZP_07355679.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|182629422|gb|ACB90370.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|301801955|emb|CBW34683.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV200]
 gi|302597473|gb|EFL64567.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|302636153|gb|EFL66649.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638300|gb|EFL68769.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|302640523|gb|EFL70932.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|302642868|gb|EFL73173.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|302645226|gb|EFL75462.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
          Length = 719

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 291/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   +       +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGAPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVVNPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|331266448|ref|YP_004326078.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
 gi|326683120|emb|CBZ00738.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
          Length = 719

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 294/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   L +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFLKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|168491100|ref|ZP_02715243.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574524|gb|EDT95052.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
          Length = 719

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKDLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|307706627|ref|ZP_07643434.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
 gi|307618082|gb|EFN97242.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/712 (23%), Positives = 294/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +    I          V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYITGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|315641367|ref|ZP_07896442.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
 gi|315482860|gb|EFU73381.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/706 (23%), Positives = 294/706 (41%), Gaps = 68/706 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+           ++ +      EE ++   L++   +F +  L   L  E+ 
Sbjct: 33  EALAAFLKENVAPNTKTFASIHDKIAYLVEEEYLEEEFLNKYQPEF-IEQLYAFLA-EQS 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N    E  +++  RVA          E+ A+   + +   
Sbjct: 91  FVFHSFMAAYKFYSQYALKTNNGE-EYLESYEDRVAFNALYFANGDEELALALADEMIHQ 149

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNSIGRGINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGSPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIMTFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+  
Sbjct: 270 NADEKIRVKTLSLGVLVPDKFYELTRKNEEMYLFSPYSVEREYGVPFSYIDIT-EKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 329 VTNPRIRKTK-IKARDLENELSKLQQESGYPYIINIDTANRAN--PVNGKIIMSNLCSEI 385

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-C 640
                    N+  E   +    S NL +    N         ++RT  R L  V D +  
Sbjct: 386 LQVQEPSLINAKQEYDVLGTDISCNLGSTNIVNLMSSPDFGKSVRTMTRALTFVTDASDI 445

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +  NH +  IGLG MG  +      + Y SPE++E  D     +++  +  S  
Sbjct: 446 DVVPSIQNGNHLNHTIGLGAMGLHTYFAKNQMEYGSPESIEFTDIYFTLLNYWTLVESNT 505

Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI-----GLLAEVRDELA-MNRTSRLPWDELKKRV 753
           +A+ER   + +F+ S +  G +    I        A+V++  A +   +   W  L   V
Sbjct: 506 IAKERQLVFHNFEKSSYADGSYFDKYIQGNHQPKSAKVKELFAGVFIPTSDDWQVLADNV 565

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+ + N +A+AP  +I+ I   S S+ P  + +  +                     
Sbjct: 566 KRDGLYHQNRLAVAPNGSISYINDTSASLHPITRLIEERQ-------------------- 605

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E  I  + Y    + N      +    + +A+++D   +I+  +  Q+ IDQ  S+
Sbjct: 606 ----EKKIGKIYYPAAYLSN------ETIGYYKSAYDMDMRKVIDVYATAQQHIDQGMSM 655

Query: 874 NLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            L+L                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 656 TLFLRSDMPEGLYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|307704818|ref|ZP_07641713.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
 gi|307621647|gb|EFO00689.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/707 (23%), Positives = 294/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K E+
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIK-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IR  VR L  V D + 
Sbjct: 385 ILQVQEPSLINDAQEYLQMGTDISCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N      GLG MG  S L    I Y SPE+VE        +++  +  S 
Sbjct: 445 IVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S + +G +    I          V++    +   S   W EL+ +
Sbjct: 505 NIARERGITFHNFEKSDYAKGSYFDKYITGEFVPKSDRVKELFKDVFIPSADDWAELRDK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + E IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|262277046|ref|ZP_06054839.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
 gi|262224149|gb|EEY74608.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
          Length = 646

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/687 (31%), Positives = 302/687 (43%), Gaps = 113/687 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G+  L DRY      S  E  Q  F RVA   A    +    A   YN
Sbjct: 56  IDRSRDANLTDFGMATLTDRYL-----SENESYQDLFARVAATYA----DDNLHAQRLYN 106

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N+GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 107 YISKLWFMPATPVLSNAGTSRGLPISCFLNEAADSLDGIVNLWSENVWLAAKGGGIGSYW 166

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 167 GNLRAIGEKVGRV-GKTSGIIPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ T GD  RR  +++    + D FM+ V  +A W L SP +                 
Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVETDADWPLKSPYDG---------------- 269

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVH 580
                       V   I A  LW ++LT   ETG P+I + D  N   PQ H   G  V 
Sbjct: 270 -----------TVQSTIKARNLWIRLLTARVETGEPYIVYIDTVNRMIPQHHKLAGLTVK 318

Query: 581 SSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +SNLC+EITL +       + TAVC L S+NL      N  ++      I   +R+LDNV
Sbjct: 319 TSNLCSEITLPTGIDKYGKDRTAVCCLSSLNL-----ENYDEWKDEPGFIEDIMRMLDNV 373

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+    + + AK S    R++GLG+MGF S +    IP  S  A     +  +FI 
Sbjct: 374 LSDFINRAPESFKDAKYSAMRERSVGLGVMGFHSYMQRHMIPIESVMAKVWNKKMFQFID 433

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG                                             
Sbjct: 434 KEVNAASKKLAEERGPCP------------------------------------------ 451

Query: 752 RVKTIGM--RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                G+  R SN  AIAPTA+I+ IC G S  I+P   N Y    +SG F V N +L  
Sbjct: 452 DAAEYGINERFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKK 511

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L++ +     + S +  + GS+ +++ +  D K +  TAFEID  WLI+ ++ R  +I 
Sbjct: 512 ILQKYNQDTNEVWSSITTNQGSVEHLDFLSQDEKDVFKTAFEIDQRWLIDHSADRTPYIS 571

Query: 869 QAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           QAQSLN+++      K L  I+ QAW  GLK+ YY RS+S    E             V 
Sbjct: 572 QAQSLNVFIPADIHKKDLHQIHYQAWKKGLKSLYYCRSKSIQRAE------------VVN 619

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +               EC  CQ
Sbjct: 620 TSFAKTKKQKSQENQQTNDYEECLSCQ 646


>gi|25010892|ref|NP_735287.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23095271|emb|CAD46481.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 289/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           EK A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|169834419|ref|YP_001694621.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996921|gb|ACA37533.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 296/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   +++     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYNVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S + +G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|69245953|ref|ZP_00603725.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257880354|ref|ZP_05660007.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257891013|ref|ZP_05670666.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894266|ref|ZP_05673919.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258614694|ref|ZP_05712464.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium DO]
 gi|260562342|ref|ZP_05832856.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|293563176|ref|ZP_06677634.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|293568384|ref|ZP_06679705.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|294617335|ref|ZP_06696974.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|314939362|ref|ZP_07846603.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|314941565|ref|ZP_07848450.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|314949608|ref|ZP_07852932.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
 gi|314953715|ref|ZP_07856590.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|314992171|ref|ZP_07857615.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|314997662|ref|ZP_07862592.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|68195483|gb|EAN09927.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257814582|gb|EEV43340.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257827373|gb|EEV53999.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830645|gb|EEV57252.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260073266|gb|EEW61607.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|291588905|gb|EFF20732.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|291596408|gb|EFF27662.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|291604867|gb|EFF34343.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|313588297|gb|EFR67142.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|313593274|gb|EFR72119.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|313594299|gb|EFR73144.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|313599624|gb|EFR78467.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|313641347|gb|EFS05927.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|313644032|gb|EFS08612.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 296/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|307353248|ref|YP_003894299.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307156481|gb|ADN35861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 722

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/659 (27%), Positives = 279/659 (42%), Gaps = 95/659 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           IL  RY         +  +    RVA  LA  E ++E     FY  ++S  F+ ++PTL 
Sbjct: 10  ILSARYLRKGE----KTFEDICHRVASALASDEKDREL----FYEAMTSLRFLPNSPTLM 61

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF   VPD + GIF A+++ A++ K  GG G +++ +R  G+ +  T+G
Sbjct: 62  NAGTEIGQLSACFTLPVPDSIPGIFDAMKQGAVIHKTGGGTGYNFSHIRAEGSPVRSTDG 121

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + F+K  N     + QGG+R+GA    L  WH D+  F+  +K  G       + 
Sbjct: 122 VASGPVSFMKAFNAATDVIKQGGRRRGANMGILNVWHPDILSFITSKKEEGS----ISNF 177

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM  V           DE+   H + G                       K
Sbjct: 178 NISVMVNDEFMTLVRD------RKFDEIWIKHPVTGV----------------------K 209

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           ++   +W  ++  +++ G P + F D  N  +P   +G +  +N C E  L         
Sbjct: 210 VTVGEIWNGIVDGIWKNGEPGVLFYDEINRHNPTPGLGDIDITNPCGEQPLLPFES---- 265

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C LGSINL A     +FD + L  T+R AVR L+NVID N + I + +++    R IGLG
Sbjct: 266 CVLGSINLAACINEGKFDEELLDDTVRMAVRFLNNVIDANVYPIPEIEEATKKTRKIGLG 325

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG   AL +L IPY SP   +   E M  I+  A+  S  LA++ G +  ++ S W   
Sbjct: 326 VMGVHDALLMLKIPYDSPGGRKWCGEIMHRITETAVEESQLLAEKLGTFPEWEKSTW--- 382

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                             K   +RN+    +APT TI+ + G S
Sbjct: 383 ----------------------------------KERKVRNAAMTTVAPTGTISLLAGCS 408

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNE-----LKQRDLWDEAMI---SDLKYH---D 828
             I+P +   Y + N  G    + S +  E     L ++    + +     ++  H    
Sbjct: 409 SGIEPVFSFAYTRMNTVGKTFFIVSPVFKEALHSTLSEKGHSGDELKKREEEVIAHVHDT 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
           GSI ++E +P D + +  TA +I     IE  +  QK++  + S  + +      K  + 
Sbjct: 469 GSIQDLEWLPADFRSLFKTALDISYRDHIEMQAVFQKYVHASISKTINMPNSAERKDCEE 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               AW +GLK     R+ S  SV  S   G   K                G    C S
Sbjct: 529 ALLAAWTLGLKGITIYRTGSRDSVVLSL--GNSEKTAPAQGQGIERPKELAGRTYMCQS 585


>gi|309800431|ref|ZP_07694592.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
 gi|308115947|gb|EFO53462.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 293/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L   +K ++
Sbjct: 32  KEALEAFFKENVVPNTMVFNSITDKINFLIEHNYIETAFIKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSKAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   +   W 
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGSYFDKYLTDEFLPKSDRVKELFKDIFIPTAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|261209283|ref|ZP_05923675.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567002|ref|ZP_06447403.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|294615273|ref|ZP_06695150.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
 gi|260076829|gb|EEW64564.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161203|gb|EFD09102.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|291591870|gb|EFF23502.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
          Length = 719

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 296/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVDITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIACERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYATAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|262362561|gb|ACY59282.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
          Length = 583

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 161/621 (25%), Positives = 272/621 (43%), Gaps = 67/621 (10%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY 381
            VA+ LA   T  +  A E    + S  F  +TPT  N G  +  +L SCFL  + D++ 
Sbjct: 1   MVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNME 57

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ 
Sbjct: 58  SIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQL 117

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    L
Sbjct: 118 GARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYL 177

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP ++  ++ +   E  I+ E Y    D   I+  + I A   ++ +  + FE+G+P++
Sbjct: 178 FSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREFFQILAEIQFESGYPYM 235

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLA 609
            F+D  N  +     G ++ SNLC+EI   ++  E               CNLGS+N+  
Sbjct: 236 MFEDTVNRAN--PIKGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIAQ 293

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D      +I  A+R L  V ++ N  ++   +K N    AIGLG M     L 
Sbjct: 294 -----VMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLA 348

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI- 726
              + Y S EA++  +     +++HAI AS +LA ER   +  F  S +  G F    I 
Sbjct: 349 RERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIE 408

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    +  +  +  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   +
Sbjct: 409 QSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHST 468

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI P    + ++                         E  I  + Y          + +
Sbjct: 469 SSIHPIVSPIEIRK------------------------EGKIGRVYYPA------PYMTN 498

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           D  + +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+K
Sbjct: 499 DNLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIK 558

Query: 899 TTYYLRSRSATSVEKSTLKGV 919
           T YY+R R    +E + ++G 
Sbjct: 559 TIYYIRLRQMA-LEGTEVEGC 578


>gi|88608409|ref|YP_506298.1| ribonucleotide-diphosphate reductase subunit alpha [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600578|gb|ABD46046.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 605

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/704 (28%), Positives = 312/704 (44%), Gaps = 118/704 (16%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           + + H    +  +  L     + RD      G  +L DRY  +      E  Q  F RVA
Sbjct: 5   SPIFHHDHDEKKIHTL-----HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVA 54

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                  ++  K A   Y+ +S+  FM +TP L N GT      SCFL    D L GI G
Sbjct: 55  KYY----SDDPKHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVG 110

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              EN  LA + GG+G+ W  +R +G  +  + GK+ G+IPF+ V N   +A++QG  R+
Sbjct: 111 LWNENVWLASHGGGVGSYWGNLRSIGEKVKCS-GKTSGIIPFIVVQNALTLAISQGSLRR 169

Query: 446 GAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           G+   YL   H ++ EF+DLRK T GD  R+  +++ A  I D FMK V ++  W L SP
Sbjct: 170 GSSAVYLPVNHPEIIEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISP 229

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            + S                           V   + A  +W ++LT   ETG P+I F 
Sbjct: 230 KDGS---------------------------VIATVGARGIWIRILTARLETGEPYILFI 262

Query: 565 DPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQF 616
           D      P  +  +   V  SNLC+EITL +  +      TA+C L S+NL         
Sbjct: 263 DTVQRLRPDVYKNLNLDVKMSNLCSEITLTTGKDHLDNHRTAICCLSSLNLEKF-----D 317

Query: 617 DYDKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +++     +R  +  LDNV    I      + +A+ S    R+IGLG+MGF S L    I
Sbjct: 318 EWEHNEQFVRDVMHFLDNVLEDFIRKAPDCMHRARYSAMRERSIGLGVMGFHSFLQSKGI 377

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A  +  +  + I   A   S E+A ERG                          
Sbjct: 378 PFESAIAKSVNLKIFKKIKHEADKISKEMALERGPC------------------------ 413

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYV 791
           +D +  +                   R  + +A+APTA+I+ I G +   I+P   N++ 
Sbjct: 414 KDAVDCDTME----------------RFVHKIAVAPTASISIIAGNTSPGIEPYAANVFT 457

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG F V N  L   L+++    + + S +  ++GS+ +++ + ++ K +  TA+E+
Sbjct: 458 QKTLSGSFVVKNKHLAALLERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEM 517

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910
           D  W+IE A+ R  +I Q+QS+NL+L     KK L  ++   W  GLK+ YY RS+S   
Sbjct: 518 DQRWVIELAADRTPYICQSQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQR 577

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             K + +         PV +                  +C  CQ
Sbjct: 578 AYKISQEYKHKSDTPSPVGE----------------SDDCIACQ 605


>gi|48478313|ref|YP_024019.1| ribonucleotide-diphosphate reductase subunit alpha [Picrophilus
           torridus DSM 9790]
 gi|48430961|gb|AAT43826.1| ribonucleoside-diphosphate reductase alpha chain [Picrophilus
           torridus DSM 9790]
          Length = 773

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/828 (24%), Positives = 352/828 (42%), Gaps = 173/828 (20%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  DG+ + F+ +++ M + +A           V   + ++    L+++ ++  L    
Sbjct: 8   VIKRDGSRVPFDKEKITMAIYKAM--------LSVKFGSMEDASK-LTDAVIDELL---- 54

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               ++EP          +E+++  V   +    +K  + +   +   Y        +  
Sbjct: 55  --KSDEEP---------TVERIQDTVEKVL--MTKKINNRDFTAVAKSYI-------IYR 94

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA 325
                   + +L+ + +DLK           +++L  RY     +G  IE P+  F RVA
Sbjct: 95  EKRKTIREEKELIGVKDDLK------LTLNAIKVLEARYLFKDQDGKIIETPRQMFHRVA 148

Query: 326 MGL--------------------------------------ALKETEKE----------- 336
           + L                                      A  E + E           
Sbjct: 149 VHLAIIEGLYDYRRYQKYNEIYQNGTVYTSLTRTQIDELKRAFDELKAEGELTGSFEDFL 208

Query: 337 -----------KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                      +   +F +++S+  F+ ++PTL N+G    QLS+CF+  V D +  IF 
Sbjct: 209 DFIKTKRNHINEYIEKFEDVMSNLKFVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFD 268

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           AL+  A + K  GG G  ++ +R     +  T G + G + F+++ + T   + QGGKR+
Sbjct: 269 ALKYTAEIHKSGGGTGFSFSRLRAKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRR 328

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA    L   H D+ +F+    +   + +   + N +  + D F +++  +    L +P 
Sbjct: 329 GANMGILRYDHPDIMDFI---TSKDSENKVLSNFNISVAVEDEFFEKLDNDDYIELKNPR 385

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +                             V  +I A  +W  ++   ++TG P + F D
Sbjct: 386 DGK---------------------------VVNRIKASTIWNTIINQAWKTGDPGMIFLD 418

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N ++P +++G + S+N C E  L         CNLGSINL     + +FD+D    TI
Sbjct: 419 EINKKNPVKNIGYIESTNPCGEQPLMPYES----CNLGSINLSKFVVDGKFDFDAYKETI 474

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A R LDNV+D N   ++K K+     R IGLGLMGF   L +L IPY S EA+EI + 
Sbjct: 475 DIATRFLDNVVDANKFPVDKIKEMTRKTRKIGLGLMGFADMLIMLGIPYNSNEALEIGER 534

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M+F++  +   S  LA+ERG +  + GS                               
Sbjct: 535 IMKFLNDESHLESQRLAEERGVFPGWYGS------------------------------D 564

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNS 804
           W+  K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G +   +N 
Sbjct: 565 WE--KQNIK---MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELIEINP 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
              NEL++R+L+ + ++  +    G++ +I+ +PDD+K++  TA EIDP W +   +  Q
Sbjct: 620 LFENELRKRNLYSDDLMEKV-ARTGNLRDID-LPDDIKRVFVTAQEIDPDWHVLMQATFQ 677

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++ D   S  + L  E +   +   YR A  +  K     R RS T  
Sbjct: 678 RYCDSGVSKTINLPYEATPDDIARSYRLAKDLHCKGITVYRDRSKTQQ 725



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 29/190 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+      +         LT+  +  LL   KS 
Sbjct: 8   VIKRDGSRVPFDKEKITMAIYKAMLSVKFGSMEDAS-------KLTDAVIDELL---KSD 57

Query: 91  LIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
               +E IQD VE  LM           + + Y++YRE+R  +R  +        +   L
Sbjct: 58  EEPTVERIQDTVEKVLMTKKINNRDFTAVAKSYIIYREKRKTIREEKELIGVKDDLKLTL 117

Query: 146 KIMM----------DDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKN--MYD 191
             +            DG +I    +    +        GL D       +E Y+N  +Y 
Sbjct: 118 NAIKVLEARYLFKDQDGKIIETPRQMFHRVAVHLAIIEGLYDYRRYQKYNEIYQNGTVYT 177

Query: 192 GLSESDLETA 201
            L+ + ++  
Sbjct: 178 SLTRTQIDEL 187


>gi|254796776|ref|YP_003081612.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
 gi|254589966|gb|ACT69328.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
          Length = 608

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 200/679 (29%), Positives = 306/679 (45%), Gaps = 105/679 (15%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           + RD      G  +L DRY  +      E  Q  F RVA       ++  + A   Y+ +
Sbjct: 24  HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVA----QYYSDDPEHACRLYDYM 74

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+  FM +TP L N GT      SCFL    D L GI G   EN  LA + GG+G+ W  
Sbjct: 75  SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 134

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +G  +  + GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++ EF+DLR
Sbjct: 135 LRSIGEKVKCS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIVEFIDLR 193

Query: 467 KNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           K T GD  R+  +++ A  I D FMK V ++  W L SP + S                 
Sbjct: 194 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKDGS----------------- 236

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN--IRSPQQHVG-VVHSS 582
                     V   + A  +W ++LT   ETG P+I F D          + +G  V  S
Sbjct: 237 ----------VIATVGARGIWIRILTARLETGEPYILFIDTVQKLRPDVYKTLGLEVKMS 286

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EITL +  +      TA+C L S+NL   F   + D   +   +     VL++ I 
Sbjct: 287 NLCSEITLTTGKDHLDNHRTAICCLSSLNLEK-FDEWEHDEQFIRDVMHFLDNVLEDFIR 345

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +A+ S    R+IGLG+MGF S L    IP+ S  A  +  +  + I   A   
Sbjct: 346 KAPDCMHRARYSAMRERSIGLGVMGFHSFLQSRSIPFESAIAKSVNLKIFKKIKHEADKI 405

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S E+A ERG                          +D +  +                  
Sbjct: 406 SKEMALERGPC------------------------KDAVDCDMME--------------- 426

Query: 758 MRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R  + MAIAPTA+I+ I G +   I+P   N++ +  +SG F V N  L   L+++   
Sbjct: 427 -RFVHKMAIAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFIVKNKHLAALLERKGKN 485

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + + S +  ++GS+ +++ + ++ K +  TA+E+D  W+IE A+ R  +I Q+QS+NL+
Sbjct: 486 TDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWIIELAADRTPYICQSQSVNLF 545

Query: 877 LDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L     KK L  ++   W  GLK+ YY RS+S     K + +         PV +P    
Sbjct: 546 LHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRTYKISQEYKHKSDTPSPVGEP---- 601

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                        +C  CQ
Sbjct: 602 ------------DDCIACQ 608


>gi|281491478|ref|YP_003353458.1| ribonucleoside-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375196|gb|ADA64709.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 722

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 179/713 (25%), Positives = 304/713 (42%), Gaps = 77/713 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E      +      EE ++A  L +   +F         K+E 
Sbjct: 32  KEAITAFFKENVEPNRYEADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFEF 91

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            F   ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 92  HFD-SFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V   +     E +I  E Y++ 
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFVEKYYGKPFAEVDITAE-YDKM 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+    I++  L +++  +  E+G+P+I   D  N  +     GV+  SNLC+EI
Sbjct: 329 VANPEIRKTP-INSRELEQELSKLQQESGYPYIVNVDTVNQAN--PVDGVISMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +                  CNLGS N+L    +     ++  ++I   VR L  + 
Sbjct: 386 LQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTS----SNEFGTSIEAMVRALTFIS 441

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  N  T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ +
Sbjct: 442 ETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYTL 501

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL--AMNRTSRLPWD 747
            AS +LA E+  ++ +F+ S +  G +       D    ++    EL   +   +   W 
Sbjct: 502 VASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDWT 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +               
Sbjct: 562 ALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  +  + Y    +   E IP      + +A++ D   +I+  +   + +
Sbjct: 608 ----------EKKVGKIYYPAAGLAT-ETIP-----YYKSAYDTDMRAVIDVYAAATEHV 651

Query: 868 DQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 652 DQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|328957626|ref|YP_004375012.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328673950|gb|AEB29996.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 725

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/719 (24%), Positives = 299/719 (41%), Gaps = 90/719 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE +   + +           L  +      E+ ++   L +   D   V    D  Y R
Sbjct: 36  REAVRAYFLEHVNPNTVFFYTLDEKLNYLIEEDYIEEEFLLK--YDRAFVRALFDDIYSR 93

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +   +  A+ LA  +TE    A    + +
Sbjct: 94  KFRFRSFMSAFKFYTQYALKTNDGERFLERYEDRIVFNALYLADGDTE---LASRLADEI 150

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + +
Sbjct: 151 VNQRYQPATPTFLNAGRKRRGELVSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLS 210

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I   +  S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  
Sbjct: 211 NLRASGDPIKKIDNASSGVVPVMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLST 270

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    +    LFSP +V  ++       +I  E Y
Sbjct: 271 KKENADEKIRVKTLSLGLVVPDKFYELAAHDEQMYLFSPYDVERIYGEPFAYIDITKE-Y 329

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   +  EI+  + ISA  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 330 DNMVNNEEIRKSK-ISARELENEISKLQQESGYPYIINVDTANREN--PVYGTITMSNLC 386

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N++    ++ F      ++I T VR L 
Sbjct: 387 SEILQVQEPSLINNDQTYEHLGTDISCNLGSTNIVNLMKSSDF-----GNSIDTMVRALT 441

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N  +  IGLG MG  + L L  I Y SPE+VE  D   + +++
Sbjct: 442 MVTDQSSIDAVPSIKNGNDKYHTIGLGAMGLHTYLALNQIHYGSPESVEFTDVYFKLLNY 501

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSR 743
           + + +S ++A+ER   + +F+ S +  G +    I          +  + D   +   + 
Sbjct: 502 YTLVSSNKVAKERNTTFYNFEKSSYANGTYFDKYINENFVFSSEKVQHLFD--GIQVPTI 559

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W  LK+ V   G+ + N +A+APT +I+ +   S S+ P  + +  +    +G     
Sbjct: 560 EDWAALKEAVMRDGLYHQNRLAVAPTGSISYVNETSSSLHPITRLIEERQEKKTGKTYYP 619

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL N                               D    + +A+++D   +I+  + 
Sbjct: 620 APFLSN-------------------------------DTMPYYTSAYDMDMRKVIDVYAA 648

Query: 863 RQKWIDQAQSLNLY----------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            QK IDQ  SL L+                  + + + L+ +   AW  G+K+ YY+R+
Sbjct: 649 AQKHIDQGMSLTLFLRSEIPEGLYEWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 707


>gi|76787476|ref|YP_329565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|76562533|gb|ABA45117.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
          Length = 719

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 289/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E+ A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDTQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|319947338|ref|ZP_08021571.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
 gi|319746580|gb|EFV98840.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
          Length = 719

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/707 (23%), Positives = 292/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   DF L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMAFDSITDKINYLIEHNYIETAFIQKYRPDF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEDIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN- 639
           I         N + E   +    S NL +    N         +IR  VR L  V D + 
Sbjct: 385 ILQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSH 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N      GLG MG  S L    I Y SPE+VE        +++  +  S 
Sbjct: 445 IVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKR 752
            +A+ERG  + +F+ S +  G +         +     V++    +   S   W EL+ +
Sbjct: 505 NIARERGITFHNFEKSDYANGSYFDKYTTGEFVPQSDRVKELFKDIFIPSAEDWAELRAK 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +                    
Sbjct: 565 VQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|25010528|ref|NP_734923.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23094881|emb|CAD46099.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 722

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 183/748 (24%), Positives = 325/748 (43%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMAFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYAK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +++                 CNLGSIN+     +   D++KL   I  ++R LD V
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRV 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+ P  +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDD 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +S               +C+ C
Sbjct: 705 MLDDFTSSDL------------EDCQAC 720


>gi|319744838|gb|EFV97176.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 719

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 289/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E+ A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFANGDEELATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|32491359|ref|NP_871613.1| ribonucleotide-diphosphate reductase subunit alpha [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166566|dbj|BAC24756.1| nrdE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 704

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/728 (24%), Positives = 295/728 (40%), Gaps = 75/728 (10%)

Query: 215 NYAKVTARFLLEK------LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +Y  + A   L        + ++V        Q    ++ +    E    Y+ +      
Sbjct: 5   DYHALNAMLNLYDKNGLLQIEKDVFAINSYYEQHVLPNKKKFSSLEDRITYLLKEEYYES 64

Query: 269 LHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI--EMPQAFFMRVA 325
                   D +        ++ F F  ++G    Y  Y L    ++   E  +     VA
Sbjct: 65  NVFENYKKDFIKNIFFQSKKQGFKFKTFMGAIKFYSSYALKTFDNKYYLEDFEDRACMVA 124

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           + L       EK A+     + S  F  +TPT  N G  +  +  SCFL  + D++  I 
Sbjct: 125 LTLGGG---NEKFAINIMQEILSGRFQPATPTFLNCGKKQRGEYVSCFLLRIEDNMESIG 181

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL     L+K  GG+    T +R  GA I     +S G++P +K+  D     NQ G R
Sbjct: 182 RALNSALQLSKRGGGVSFLLTNLRESGAPIKCIKNQSSGIVPVMKMLEDAFSYANQLGAR 241

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K   +N    LFSP
Sbjct: 242 QGAGAVYLHAHHPDILNFLDTKRENADEKIRIKTLSLGVIIPDITFKLAKENQNMCLFSP 301

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            ++  +++    E  I+   Y  +           I+A + ++K+  + FE+G+P+I F+
Sbjct: 302 YDIKKVYNKPFSELIISKIYY--KLINDIRIKKISINARSFFQKLAEVQFESGYPYIMFE 359

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFA 612
           D  N  +     G ++ SNLC+EI   +++ E               CNLGS+N+     
Sbjct: 360 DTVNKEN--PIYGKINMSNLCSEILQVNTASEYNEDLSYKKIGRDISCNLGSLNIA---- 413

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               D   L  T+  A+R L  V DI   +++    K N    +IGLG M     L   +
Sbjct: 414 -KTMDSSNLGKTVEVAIRCLTAVSDITKINSVSSVVKGNKKSHSIGLGQMNLHGYLAREN 472

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLA 730
           I Y SPEA+E  +     I++HAI  S  LA ER   +S F  S +  G F         
Sbjct: 473 IFYGSPEAIEFTNFYFYVITYHAIRTSNLLAIERKKTFSGFSRSKYANGKFFKKYTKKTW 532

Query: 731 EVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
             + +          ++  +   W  L+  V   G+ N N  AI PT +I+ I   + SI
Sbjct: 533 IPKSDRILNLFNNNNIHLPTLKEWKILENSVMKYGLYNQNLQAIPPTGSISYINYSTSSI 592

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + ++                         E  I  + Y    + N         
Sbjct: 593 HPVVSRIEIRK------------------------EGKIGRVYYPAPYMTNKNLC----- 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+EI P  +I++ +   K +DQ  SL L+  D+ + + ++     AW  G+KT Y
Sbjct: 624 -YYQDAYEIGPKKIIDTYAAATKHVDQGLSLTLFFRDDATTRDINKAQIYAWKKGIKTLY 682

Query: 902 YLRSRSAT 909
           Y+R R  T
Sbjct: 683 YVRIRQLT 690


>gi|168493104|ref|ZP_02717247.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576680|gb|EDT97208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
          Length = 719

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMKDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWT 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|270292679|ref|ZP_06198890.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
 gi|270278658|gb|EFA24504.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
          Length = 719

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 293/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E YE 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYEE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE++E        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  +  F+ S +  G +         I     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHKFEKSDYANGSYFDKYVTGEFIPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|22536983|ref|NP_687834.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|77405563|ref|ZP_00782654.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|77410694|ref|ZP_00787053.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|22533838|gb|AAM99706.1|AE014229_7 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|77163230|gb|EAO74182.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77175870|gb|EAO78648.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 719

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 289/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E+ A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|322376537|ref|ZP_08051030.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
 gi|321282344|gb|EFX59351.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
          Length = 719

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/712 (23%), Positives = 296/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + ++   + +   +F L  ++  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKIDYLIEHDYIETTFIKKYRPEF-LEEMSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S + +G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|295397109|ref|ZP_06807220.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294974651|gb|EFG50367.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 732

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/721 (24%), Positives = 295/721 (40%), Gaps = 98/721 (13%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCR-YIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                Y  P     H ++          YIEEG   +        F+ +    D  Y   
Sbjct: 44  AYFLEYVNPNTVFFHTLEEKLQYLVDNDYIEEGFLNKY------SFNFIQSLFDHLYSHK 97

Query: 291 FAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  ++G    Y +Y L  N ++  +E  +    R+A          E  A        
Sbjct: 98  FRFKSFMGAYKFYTQYALKTNDNKRFLERYED---RIAFTALYLADGDEDLAWHIAEEHI 154

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
                 +TPT  N+G  R  ++ SCFL  V D++  I  A+  +  L+K  GG+G + + 
Sbjct: 155 EHRLQMATPTFLNAGKKRRGEMVSCFLIDVQDNMESIGRAVNSSLQLSKRGGGVGVNLSN 214

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G      GV+P +K+  D     NQ G+R GA   YL  +H DV EFL  +
Sbjct: 215 LREAGAAIKGIENAGSGVVPVMKLLEDAFSYANQLGQRNGAGVVYLNAFHPDVYEFLSTK 274

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD + + +  N    LFSP +V  ++       +I  E+YE
Sbjct: 275 KENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFSPYDVERIYGEPFGYVDIT-EHYE 333

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 EIK ++ I+A  L +++  +  E+G+P+I   D  N  +     G +  SNLC+
Sbjct: 334 DMVANKEIKKYK-INARELEQEISRLQQESGYPYIMNVDTANKEN--PINGTITMSNLCS 390

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI                       CNL S N+      N F        + TAVR L  
Sbjct: 391 EIMQVQKPSTLNEDLTYKEVGLDISCNLASTNITEMLKTNDF-----EKAVDTAVRALTA 445

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D+     +   ++ N  + +IGLG MG  +AL    I Y S EA+E+ D     + ++
Sbjct: 446 VSDMTSIQAVPSVERGNSAYNSIGLGAMGLHTALATNQIHYGSAEALELTDAYFMALRYY 505

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVF-----------PIDSIGLLAEVRDELAMNRT 741
           A+  S ++A+ER  ++  F  S +  G +            +     +A++ D +  +  
Sbjct: 506 ALKTSNQIAKERGESFFEFDQSAYADGSYIRERYIDNQVPFVFHSEKVAKLFDHI--HIP 563

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
           +   W  L + +   G+ N+  + +APT +I+ I   S SI P    +  +     G   
Sbjct: 564 TPDDWAALNQAIMADGLYNAYLLTVAPTGSISYINEASSSIHPIVHLIENRQETNIGSMF 623

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L N                               D  + + +A+E D   +I++ 
Sbjct: 624 YPAPYLDN-------------------------------DTIQYYKSAYETDMRQVIDTY 652

Query: 861 SRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  QK IDQ  SL L++                D+ + + L+ +   AW  G+K+ YY+R
Sbjct: 653 ATAQKHIDQGMSLTLFMQSTIPRGLYEWKNGNTDKMTTRDLNRLRNYAWAKGIKSIYYVR 712

Query: 905 S 905
           +
Sbjct: 713 T 713


>gi|77413116|ref|ZP_00789316.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77160817|gb|EAO71928.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 719

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 289/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           EK A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEKLATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 RDAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|73667183|ref|YP_303199.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia canis
           str. Jake]
 gi|72394324|gb|AAZ68601.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 622

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 205/704 (29%), Positives = 318/704 (45%), Gaps = 104/704 (14%)

Query: 264 VKARLLHESMMDFDLVYLANDL--KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           + A L +  + D  +V +   +   Y RD      G  +L DRY L       E  Q  F
Sbjct: 10  IYAFLQYVVLNDEKMVEIMRKVIVDYGRDNNLTSFGKAVLSDRYLLEN-----EDYQQLF 64

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +R++       ++  + A   Y+ +S   FM +TP L N GT      SCFL    D L 
Sbjct: 65  VRISEYY----SDNPEHAQRLYDYMSQLWFMPATPILSNGGTNRGLPISCFLNETEDSLR 120

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI     EN  LA   GG+G+ W  +R +G  +   +GK+ G+IPF+ V N   +A++QG
Sbjct: 121 GIVNLWNENVWLASKGGGIGSYWGNLRSIGEKVR-GSGKTSGIIPFIVVQNALTLAISQG 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             R+G+   YL  WH ++EEFLDLRK TG D  R+  +++    + D FMK V  +  W 
Sbjct: 180 SLRRGSSAVYLPVWHPEIEEFLDLRKPTGGDPNRKALNIHHGVVLSDKFMKCVENDEPWD 239

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L SP +                             V   + A  +W K+LT   ETG P+
Sbjct: 240 LISPKD---------------------------QSVIFTVKARDIWIKILTTRVETGEPY 272

Query: 561 ITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFA 612
           I F D      P+ +  +   +  SNLCTEITL +  +      TA+C L S+NL  ++ 
Sbjct: 273 ILFIDQVEQNKPEIYKKLNLNIKMSNLCTEITLTTGYDHLNKSRTAICCLASLNL-EYYE 331

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             + +   +   +R    VL + I+   + +E+AK S    R+IG+G+MGF S L    I
Sbjct: 332 KWKDNSLFIEDVMRFLDNVLTDFIEKAPNDMERAKYSAMRERSIGVGVMGFHSFLQSKMI 391

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A     +    I  HA +AS  +A E+G+                       + 
Sbjct: 392 PFESVAATIWNKKIFSHIKRHADAASYNIAMEKGSCP---------------------DA 430

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYV 791
           +D   +                    R  N ++IAPTA+I+ I G +   I+P   N++ 
Sbjct: 431 QDAGVIE-------------------RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFT 471

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
              ++G F V N FL   L  +   +E + S +  ++GS+ +++ + ++ K I  TA+E+
Sbjct: 472 HKTLTGSFIVRNKFLQKLLIVKGKDNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYEL 531

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910
           D  W+IE  S R K+I QAQS+N++L     K+ L  I+  AW  GLK+ YY RS+S   
Sbjct: 532 DQRWIIEHTSDRSKYICQAQSVNIFLPANVHKRYLHKIHFLAWKKGLKSLYYCRSKSIQR 591

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +K +   ++  +                         EC  CQ
Sbjct: 592 ADKVSHGALEKSVEQYKQITN-------------FDYNECLSCQ 622


>gi|307708707|ref|ZP_07645170.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
 gi|307615281|gb|EFN94491.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
          Length = 719

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 295/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREQVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|77411320|ref|ZP_00787669.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77162656|gb|EAO73618.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
          Length = 722

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/748 (24%), Positives = 325/748 (43%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMTFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYAK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +++                 CNLGSIN+     +   D++KL   I  ++R LD +
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRI 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+ P  +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDD 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +S               +C+ C
Sbjct: 705 MLDDFTSSDL------------EDCQSC 720


>gi|306829460|ref|ZP_07462650.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
 gi|304428546|gb|EFM31636.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
          Length = 719

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 294/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKIDYLIEHNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S E+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   +   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFRDVFIPTAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQANGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|194398211|ref|YP_002037787.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae G54]
 gi|194357878|gb|ACF56326.1| ribonucleoside-diphosphate reductase, alpha subunitv [Streptococcus
           pneumoniae G54]
          Length = 719

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 291/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEF-LEELAQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + +    RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELA-MNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +       W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I  I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQEDGLYHQNRLAVAPNGSIXYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|301633424|gb|ADK86978.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           pneumoniae FH]
          Length = 721

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 175/720 (24%), Positives = 307/720 (42%), Gaps = 72/720 (10%)

Query: 216 YAKVTARFLLEKLRR-EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           Y KV   F ++ L   E     + KP+    H  +    E     ++       +  +M 
Sbjct: 25  YTKVYGDFKMD-LHAVEAYIQEHVKPKTKVFHSTK----ERLDFLVKNDYYDENI-INMY 78

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            F+         Y   F +  ++G    Y+ Y L     +  + + +  RV M +     
Sbjct: 79  SFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGKWYL-ENYEDRVVMNVLFLAN 137

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
               +A++    + +  F  +TPT  N+G  +  +  SC+L  + D++  I  A+     
Sbjct: 138 GNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLRIEDNMESIGRAITTTLQ 197

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S  +IP +K+  D+    NQ G+R+GA   YL
Sbjct: 198 LSKRDGGVALLLTNIRESGAPIKKIENQSSDIIPIMKLLEDSFSYANQLGQRQGAGAVYL 257

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H DV +FLD ++   D++ R   ++    IPD+       N    LFSP +V + + 
Sbjct: 258 HAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKNNEEMALFSPYDVYEEYG 317

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
               +  +    YE  A++   K F  I+A   ++ +  + FE+G+P+I F D  N R+ 
Sbjct: 318 KPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVAELHFESGYPYILFDDTVNRRNA 375

Query: 573 QQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDK 620
             +   +  SNLC+EI   S+  E               CNLGS+N+     +      +
Sbjct: 376 HPN--RIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLNIAKAMESG----PE 429

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            +  ++ A+  LD V  + N  T    +K N  + A+GLG M     L    I Y SPEA
Sbjct: 430 FSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHGFLATNQIYYNSPEA 489

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-----------L 728
           ++  +     +++HA  AS ELA E+G + +F+ + +  G +    I             
Sbjct: 490 IDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKYIKVEPDFWTPKTER 549

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +  +  +  +   +R  W EL   ++  G+ NS+ +AIAPT +I+ +   + S+ P    
Sbjct: 550 VKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISYLSSCTPSLQPVVSP 609

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + V+         V ++ +N+                             D        A
Sbjct: 610 VEVRKEGRLGRIYVPAYQLNK-----------------------------DSYPFYKDGA 640

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E+ P  +I  A+  Q+ +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R 
Sbjct: 641 YELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQ 700


>gi|294623133|ref|ZP_06702019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
 gi|291597502|gb|EFF28667.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
          Length = 719

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 296/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAMAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|77408851|ref|ZP_00785578.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|77172537|gb|EAO75679.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 719

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/707 (22%), Positives = 288/707 (40%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E+ A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+     +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFTNHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 655 MTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|76788702|ref|YP_329138.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|77406063|ref|ZP_00783139.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|76563759|gb|ABA46343.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
 gi|77175343|gb|EAO78136.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 722

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/748 (24%), Positives = 324/748 (43%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMAFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYAK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFTFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +++                 CNLGSIN+     +   D++KL   I  ++R LD V
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRV 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+ P  +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 VDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDD 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +S               +C+ C
Sbjct: 705 MLDDFTSSDL------------EDCQSC 720


>gi|319744437|gb|EFV96794.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 722

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/748 (24%), Positives = 325/748 (43%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMTFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYTK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +++                 CNLGSIN+     +   D++KL   I  ++R LD +
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRI 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+ P  +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDD 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +S               +C+ C
Sbjct: 705 MLDDFTSSDL------------EDCQSC 720


>gi|289167886|ref|YP_003446155.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
 gi|288907453|emb|CBJ22290.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
          Length = 719

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/712 (23%), Positives = 295/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIY 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S + +G +         I     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFIPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + E IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|269121364|ref|YP_003309541.1| ribonucleoside-diphosphate reductase, subunit alpha [Sebaldella
           termitidis ATCC 33386]
 gi|268615242|gb|ACZ09610.1| ribonucleoside-diphosphate reductase, alpha subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 696

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 179/737 (24%), Positives = 310/737 (42%), Gaps = 80/737 (10%)

Query: 209 LIEKEPNYAKVTARFLL-----EKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I K   +  +    ++      +L ++   V +       K T         E     I
Sbjct: 1   MIAK--KWIFLNNEIMIKKDDEFQLEKDKEAVKSYFLDYVNKNT--VFFYTLKEKIDYLI 56

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHIN--GSRIEMP 317
           E           M  F+ +     L Y++ F F  ++     Y  Y L  +     +E  
Sbjct: 57  ENDYYIDFYK--MYTFEEIQKVFTLVYDKKFRFPSFMSAFKFYQSYALRDDSGEKFLERY 114

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTV 376
           +     +++ L         +++E+  +L +  +  +TPT  NSG +   +L SCFL  +
Sbjct: 115 EDRIAVISLYLGQG---NLTQSLEYAEMLINQEYQPATPTFLNSGKKRSGELVSCFLDEI 171

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D+L GI  A+     L+   GG+  + + +RG G  I G  G++ GV+P +K+  D   
Sbjct: 172 GDNLNGIGYAVDSAMKLSSIGGGVALNLSKLRGRGESIKGVEGRASGVLPIMKILEDIFS 231

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R GA   YL  +H D+EEFLD +K   D++ R   ++    IPD FM+   ++
Sbjct: 232 YANQLGQRAGAGAVYLNVFHSDIEEFLDCKKINVDEKVRIKSLSIGVIIPDKFMELAEKD 291

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + +F    V   +  Y  + ++  E YE   D       +K++A  L  K+     E+
Sbjct: 292 EPYYVFHAHTVFQEYGKYLDDMDM-NEMYEELVDNP-NVKKKKLNARHLLVKIAQTQKES 349

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGS 604
           G+P++ FKD  N     + +G V  SNLCTEI   S   +               CNLGS
Sbjct: 350 GYPYLFFKDNANNEHALKDIGEVKFSNLCTEIMQLSEVSDIGTYYEEDTIRRGISCNLGS 409

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N++    N      ++   ++TA+  L  V D  N   +   KK+N    ++GLG M  
Sbjct: 410 LNIVTVMENK-----RIKEAVKTAMESLTMVSDLTNIDMVPSIKKANEELHSVGLGAMNL 464

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFP 722
                   I Y S EA++  +     +++++I  S+E+A+     +  F+ S + +G + 
Sbjct: 465 HGFFAKNFIMYESREALDFCNVFFMIVNYYSIEKSMEIARDRNKRFKDFEKSEYAKGTYF 524

Query: 723 IDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                        +V++    ++  ++  W+ LK +V   GM ++  MAIAP  + + I 
Sbjct: 525 DKYTEHEYMPKTEKVKELFDGIHIPTKEDWEILKGQVMKNGMYHAYRMAIAPNQSTSYIL 584

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P    + V+            +L N                            
Sbjct: 585 SSTASVMPIVDTIEVREYGDSTTFYPMPYLTN---------------------------- 616

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
              D    + +A+++D   LI+  S  Q+ +DQ  S  LY +   + + L   Y  A  M
Sbjct: 617 ---DNYFFYKSAYDMDQKSLIKLISVIQRHVDQGISTILYTNSSDNTRDLAKYYVYAHKM 673

Query: 896 GLKTTYYLRSRSATSVE 912
           GLK+ YY R+R AT  E
Sbjct: 674 GLKSLYYTRTRKATIDE 690


>gi|321309598|ref|YP_004191927.1| ribonucleotide reductase of class Ib (aerobic) subunit alpha
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801442|emb|CBY92088.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 700

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/701 (26%), Positives = 305/701 (43%), Gaps = 68/701 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E +    K   +    +++ +  E     IE       L  S  D +++ +  DL    +
Sbjct: 31  EAIAEYEKYVDENFATDLEGI--ERIRWLIENNFYVADLINSFTDAEVIEII-DLVKSYN 87

Query: 291 FAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  Y+ ++  YD Y L  +  +  +E      +  A+ L  ++      A +    + 
Sbjct: 88  FRFKSYMSIKKFYDSYALRTDDKKRFLERYDDRIIACALFLGRRDF---NFAKKLAKSMI 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TPT  N+G +   +L SCFL  V D L  I   +     L+K  GG+  + + 
Sbjct: 145 EQKYQPATPTFSNAGKKRSGELVSCFLLEVDDSLNSINYIISTAMQLSKIGGGVAINLSK 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I      + GVIP +K+  +     +Q G+R GA  AYL  +H D+ EFLD +
Sbjct: 205 LRARGAQIKHIEAAASGVIPVIKILENVFDYADQLGQRPGAGAAYLSIFHWDLIEFLDCK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +P+ F+    + A + LF P  V   + ++  + +++ + YE
Sbjct: 265 KINADEKSRIQTLSLGLLVPNKFIDLCIEGADYYLFEPYTVFKKYGVHMSDMDMS-KWYE 323

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A   +  + + ISA  +   +    FE+G+P+I + D  N ++P + +G +  SNLCT
Sbjct: 324 VLAHDPD-ILKKSISARDVLNNIAKTQFESGYPYIIYIDTANKKNPLKKLGQIKMSNLCT 382

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI     +                 CNLGS+N+ + F   +     L  TI  A+R L  
Sbjct: 383 EIFQIQETSTIKDYGDLDDIRYDVSCNLGSLNINSLFEGEK----NLEETIEVAMRALSM 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V DI +       +K+N    ++GLG M     L    + Y SPEAVE A      I+F 
Sbjct: 439 VSDISSIANAPGVRKANSELHSVGLGAMNLAGFLAKNKLHYDSPEAVEFASVLFAAINFF 498

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPW 746
           +I AS  +AQER   +  F+ S +  GV+ +     D +     V++    M   +R  W
Sbjct: 499 SIKASCLIAQERKKTFEGFEKSDYYSGVYFLKYLENDYLPKSDVVKELFKDMKLPTREDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL K+VK  G+ N+  +AIAPT TI+ +   + SI P    L  +   +        FL
Sbjct: 559 QELAKKVKECGLYNAYRLAIAPTQTISYLNNSTPSIAPVVDVLETRLYGNSLTYYPMPFL 618

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                            D    + +A+ +D   +I+  S  Q+ 
Sbjct: 619 NK-------------------------------DTWYYYKSAYLLDQKAIIDMVSAIQEH 647

Query: 867 IDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQ  S  LY+   +  + L   Y  AW  GLK+ YY R++
Sbjct: 648 VDQGISTVLYVTNNTSTRDLVRFYIYAWHKGLKSLYYTRTK 688


>gi|22536603|ref|NP_687454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|76798640|ref|ZP_00780866.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77407709|ref|ZP_00784464.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|22533440|gb|AAM99326.1|AE014211_3 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|76586005|gb|EAO62537.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77173708|gb|EAO76822.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 721

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/748 (24%), Positives = 324/748 (43%), Gaps = 81/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  +          ++ LL +  ++F  +    +  Y +
Sbjct: 29  KEAVEQYMIEHVEPNTMVFTSLIEKLDYLVSNNYYESDLLKQYNLEF--ICQIFEHAYAK 86

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            FAF  ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + +
Sbjct: 87  KFAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLA 145

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G  R  +  SC+L  + D++  I  A+  +  L+K  GG+    T +
Sbjct: 146 NRFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++
Sbjct: 206 REFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +    N    LFSP ++  ++     +  I  E    
Sbjct: 266 ENADEKIRIKSLSLGLVIPDITFELAKANKDMALFSPYDIERVYGKPMSDISITEEYETL 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K F  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 326 LANADIRKTF--ISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   +++                 CNLGSIN+     +   D++KL   I  ++R LD V
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAM-DQAADFEKL---IANSIRALDRV 439

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +   +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A
Sbjct: 440 SRTSDLDSAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPW 746
             AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W
Sbjct: 500 FKASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++ 
Sbjct: 560 RKLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAYK 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++                              D+       A+E+    +I  A+  QK 
Sbjct: 620 IDA-----------------------------DNYVYYKKGAYEVGSEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L+G +   + 
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------QDILEGSESYDDM 704

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +                + +   +C+ C
Sbjct: 705 L-------------DDFTSSDLEDCQSC 719


>gi|294782023|ref|ZP_06747355.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481834|gb|EFG29603.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 611

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 200/637 (31%), Positives = 319/637 (50%), Gaps = 57/637 (8%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
              + K++  D  +   N +++   +  AC GL+ V+   + S       + ++   ++ 
Sbjct: 2   TNERRKVINRDNIVEDLNIEKIREKLLRACDGLE-VNMVELESNIDSIYEENITTQKIQA 60

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +LI ++ T+   +E ++A V  R L+ +  REV  +                + +     
Sbjct: 61  SLINTAVTMTSFEESDWAYVAGRLLMMEAEREVYHS---------RKFSYGDFAKTIKHM 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E G+    L     + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ 
Sbjct: 112 VELGLYDERLLAY-TEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQE 170

Query: 320 FFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM ++M LAL E E E R     EFYN LS      +TP L N    +  LSSCF+T +
Sbjct: 171 TFMTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAI 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAV
Sbjct: 231 DDNIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAV 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N
Sbjct: 291 AVNQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNN 350

Query: 497 AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             WTLF P E+      +L +LYG EFE  YE  E+     +IK+ R +SA  L++ ++ 
Sbjct: 351 ESWTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMK 407

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------------- 594
              ETG P+I FKD  N  +   H+G++ + NLC E   N                    
Sbjct: 408 TQLETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRS 467

Query: 595 --EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E   CNL S+NL       +   D+L   +  AVR LDN ID+    ++++ K N  
Sbjct: 468 EMGEIHTCNLISLNLA------ELTSDELEKYVALAVRALDNTIDLTVTPLKESNKHNLM 521

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FK
Sbjct: 522 YRTIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFK 579

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           GS WDQ +F         + R+    N   +  W+E 
Sbjct: 580 GSKWDQAIFFG-------KKREWYEANSKFKDEWNEA 609


>gi|289444614|ref|ZP_06434358.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
 gi|289417533|gb|EFD14773.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
          Length = 726

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/706 (24%), Positives = 285/706 (40%), Gaps = 82/706 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEE 262
           E +Y  + A   +  L        + K ++A H                  E     I E
Sbjct: 24  ETDYHALNA---MLNLYDADGKIQFDKDREAAHQYFLQHVNQNTVFFHNQDEKLDYLIRE 80

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQA 319
               R + +     + V    D  Y + F F  +LG    Y  Y L   +G R  E  + 
Sbjct: 81  NYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED 139

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
             + VA+ LA  +T     A    + +    F  +TPT  NSG  +  +  SCFL  V D
Sbjct: 140 RVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRVED 196

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D     
Sbjct: 197 NMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDAFSYA 256

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N  
Sbjct: 257 NQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDD 316

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             LFSP +V  ++ +   +  +  + YE   D        KI A   ++ +  + FE+G+
Sbjct: 317 MYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQTLAELQFESGY 374

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSIN 606
           P+I F+D  N  +     G +  SNLC+EI   S+              +   CNLGS+N
Sbjct: 375 PYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGKDISCNLGSLN 432

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +         D    A TI  A+R L  V D     ++   ++ N+   AIGLG M    
Sbjct: 433 IA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHG 487

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPID 724
            L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F   
Sbjct: 488 YLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDK 547

Query: 725 SIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
               + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I 
Sbjct: 548 YTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYIN 607

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + SI P    + ++                         E  I  + Y          
Sbjct: 608 HSTSSIHPIVSKVEIRK------------------------EGKIGRVYYPA------PY 637

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           + +D  + +  A+EI    +I++ +   + +DQ  SL L+  + + 
Sbjct: 638 MTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTAT 683


>gi|315613101|ref|ZP_07888011.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
 gi|315314663|gb|EFU62705.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
          Length = 719

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 167/712 (23%), Positives = 293/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   L +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFLKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSATDWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|293365330|ref|ZP_06612047.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
 gi|291316780|gb|EFE57216.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
          Length = 719

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   L +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFLKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S E+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSATDWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|295397899|ref|ZP_06807961.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294973879|gb|EFG49644.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 727

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 293/716 (40%), Gaps = 91/716 (12%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCR-YIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                +  P     + +           Y+EEG        ++ D + V       Y+  
Sbjct: 43  AYFLEHVNPNTVFFYTLDEKIDYLVEHDYLEEGFL------NLYDREFVKRLMQETYDFK 96

Query: 291 FAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  ++     Y +Y L  N  +  +E  +   +  A+ LA      E+ A +  + + 
Sbjct: 97  FRFKSFMSAYKFYTQYALKTNDGKRYLERYEDRIVFTALYLA---NGDEQVASDLRDEMI 153

Query: 348 SFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G + T 
Sbjct: 154 NQRYQPATPTFLNAGRKRRGELVSCFLIQATDDMNSIGRTINSALQLSRLGGGVGVNLTN 213

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      S G+IP +K+  D+    NQ G+R GA   YL  +H DV  FL  +
Sbjct: 214 IRAAGDPIKKIENASSGIIPVMKLLEDSFSYSNQLGQRNGAGAVYLSVFHPDVVSFLSAK 273

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   ++    LFSP +V  ++        I  E Y+
Sbjct: 274 KENADEKIRVKTLSLGLVVPDKFYELAEKDEMMYLFSPYDVERIYGKPYAYVNIT-EEYD 332

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +  EIK  + I A  L   +  +  E+G+P+I   D  N ++     G +  SNLC+
Sbjct: 333 NLVNNPEIKKSK-IRARDLEDDISKLQQESGYPYIINIDTVNDQN--PIDGTIVMSNLCS 389

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI                       CNLGS N+     NN         ++ T VR L  
Sbjct: 390 EILQVQRPSIINNDQTFEELGTDISCNLGSTNI-----NNLMHSPDFGKSVDTMVRGLTY 444

Query: 635 VIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +    +   KK N     IGLG MG  +   L  + Y SPE++E  D+    ++++
Sbjct: 445 VTDASAIDVVPSIKKGNDLAHTIGLGAMGLHTYFALNEMHYGSPESIEFTDKYFLLLNYY 504

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPW 746
            + AS  +A+ERG  + +F+ S +  G +    I        E        ++  ++  W
Sbjct: 505 TLVASNRIAKERGVTFENFENSTYATGEYFDKYINEETTFEFERVAAQFEGIHIPTQEDW 564

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
             L+  V+  G+ + N +A+APT +I+ +   S S+ P  Q +  +    +G       F
Sbjct: 565 KALRAAVQEHGLYHQNRLAVAPTGSISYVNETSSSLHPIIQLIEERQEKKTGKTYYPAPF 624

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L N+                                   + +A++ID   +I+  +  Q+
Sbjct: 625 LSNK-------------------------------TLPYYQSAYDIDNRRIIDIYAAAQQ 653

Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            IDQ  SL L++                   + + L+ + R AW  G+K+ YY+R+
Sbjct: 654 HIDQGMSLTLFMRSDIPAGLYPWKEGRTSKMTTRDLNILRRYAWKRGIKSIYYVRT 709


>gi|257125879|ref|YP_003163993.1| ribonucleoside-diphosphate reductase, subunit alpha [Leptotrichia
           buccalis C-1013-b]
 gi|257049818|gb|ACV39002.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 699

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/731 (24%), Positives = 318/731 (43%), Gaps = 78/731 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHES 272
            +  +    ++    ++      +K ++A +        +   F   +EE ++  + ++ 
Sbjct: 8   KWIYLNNEIMV----KQGEDFQLEKDKEAVYSYFVDYVNKNTVFFHNLEEKMRYLIKNDY 63

Query: 273 MMDFDLVYLANDLK------YERDFAF-EYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323
            ++F  +Y  +++K      Y++ F F  ++     Y  Y L  +     +E  +     
Sbjct: 64  YINFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSYALMDDTGEKFLERYEDRIAT 123

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           V++ LA    EK   A E+  +L +  +  +TPT  NSG +   +L SCFL  + D+L G
Sbjct: 124 VSLYLAQGNVEK---AKEYALMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSG 180

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I      +  L+   GG+  + + +R  G  I G  G++ GV+P +K+  D     NQ G
Sbjct: 181 IGYIFDSSMKLSSIGGGVSINLSKIRARGEAIKGVEGRASGVLPIMKILEDIFSYANQLG 240

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+ EFLD +K   D++ R   ++    +P+ FM+   ++     F
Sbjct: 241 QRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIGVIVPNKFMQLAIEDEVCYTF 300

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  Y  E ++  E YE+  D       +KI+A  L  K+     E+G+P++ 
Sbjct: 301 NPHTVFLEYGQYLDEMDM-NEMYEKLVDNP-NVKKKKINARELLVKISQTQKESGYPYLF 358

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV-----CNLGSINLLAH 610
           FKD  N     + +G V  SNLCTEI         N+  EE  +     CNLGS+N+   
Sbjct: 359 FKDNANKEHALKEIGTVKFSNLCTEIMQLSEVSDINAYYEEDTIRRGISCNLGSLNIATV 418

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++    + A+  L  V D  N   +   KK+N    ++GLG M     L  
Sbjct: 419 MENK-----RIKEATKAAIDSLTMVSDLTNIDIVPSIKKANDELHSVGLGAMNLHGYLAK 473

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-- 726
             I Y S EA++  +     ++F+++  S+E+A+E+   +  F+ S +  G +    I  
Sbjct: 474 NFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKGETFKDFEKSEYANGNYFDKYITK 533

Query: 727 ---GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                  +++     +   ++  W  LK++V   G+ N+  MAIAP  + + I   + S+
Sbjct: 534 EYVPQTEKIKQLFEGICIPTKEDWANLKEQVMKHGVYNAYRMAIAPNQSTSYIMNSTASV 593

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    + V+            +L N                               D  
Sbjct: 594 MPVVDTIEVREYGDSTTFYPMPYLTN-------------------------------DNY 622

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             + +A++++   +++  S  Q+ +DQ  S  LY     S + L  +Y  A  +GLK+ Y
Sbjct: 623 FFYKSAYDMNQKNILKLISVIQRHVDQGISTILYTKSTDSTRDLARLYIYAHRLGLKSLY 682

Query: 902 YLRSRSATSVE 912
           Y R+R AT  E
Sbjct: 683 YTRTRKATIEE 693


>gi|148284014|ref|YP_001248104.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Boryong]
 gi|146739453|emb|CAM79092.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 605

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/686 (30%), Positives = 312/686 (45%), Gaps = 97/686 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                +  ER+          L DRY L       E  Q   +R+A   A    + +  A
Sbjct: 6   KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S   F+ +TP L N GT      SCF+  V D L+GI     EN  LA   GG
Sbjct: 57  QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGG 116

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   I   NG S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPVSHPEI 175

Query: 460 EEFLDLRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R++TG D  R   +++    I D FM  V +N  W L SP +            
Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYD------------ 223

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQH 575
                           ++   + A  LW K+LT   ETG P+I F D  N       Q+ 
Sbjct: 224 ---------------NRIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268

Query: 576 VGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
              V +SNLC+EITL +  +      TAVC L S+NL  +F   Q +   +   I+    
Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIKFLDN 327

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL++ I+   +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I
Sbjct: 328 VLEDFINKAPNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHI 387

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
                + SV LA+ERGA                                       D  K
Sbjct: 388 KLQTDNMSVVLAKERGAC-------------------------------------IDAQK 410

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
             ++    R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   
Sbjct: 411 CNIQE---RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKL 467

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+ + L ++ + S +  H+GS+ ++  + D  K+++ TA+EID  WLIE A+ R ++I Q
Sbjct: 468 LESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQ 527

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +QSLN++L     K+ L  I+  AW   +K+ YY RS S    EK +        + V  
Sbjct: 528 SQSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTT 579

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            D  +        ++  +D EC  CQ
Sbjct: 580 IDELAKLTDKEQLATSNNDDECLACQ 605


>gi|190571531|ref|YP_001975889.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018934|ref|ZP_03334742.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357803|emb|CAQ55259.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995885|gb|EEB56525.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 594

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 202/682 (29%), Positives = 317/682 (46%), Gaps = 103/682 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            + Y +D      G  +L DRY +       E  Q  F+R+A       ++ ++ A   Y
Sbjct: 5   AINYAKDSKLTDFGKAVLLDRYLIEN-----ESYQDLFIRIANYY----SDNKEHAQRLY 55

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ 
Sbjct: 56  DYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSY 115

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  +R +G  +   +GK+ G++PF+ V N   +A++QG  R+G+   YL  WH ++EEFL
Sbjct: 116 WGNLRSIGESVK-GSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFL 174

Query: 464 DLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           DLRK T GD  R+  +++ A  + D FM+ V  +  W L SP                  
Sbjct: 175 DLRKPTGGDPNRKALNIHHAVIVTDKFMQAVEDDQEWDLISPH----------------- 217

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVV 579
                       KV   + A  +W K+LT   ETG P+I F D  N     S ++    +
Sbjct: 218 ----------NNKVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDI 267

Query: 580 HSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
             SNLC+EITL +  +      TAVC L S+NL  ++   + +   +   +R    VL++
Sbjct: 268 KMSNLCSEITLTTGYDHLKKSRTAVCCLSSVNL-EYYEEWKDNELFIEDIMRFLDNVLED 326

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I+   + I++AK S    R+IGLG+MGF S L    +P+ S  A +   +  + +   A
Sbjct: 327 FINQAPNEIQRAKYSAIRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKVFKHLREQA 386

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
              S +LA+E+G                     L A+  D +                  
Sbjct: 387 DVVSKKLAEEKGPC-------------------LDAKEIDLME----------------- 410

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
               R ++ +AIAPTA+I+ I G +   I+P   N++++  ++G F V N FL   L ++
Sbjct: 411 ----RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEK 466

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           +  ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R  +I Q+QS+
Sbjct: 467 NQDNDEIWSSISTNEGSVQHLDFLSKHEKLTFKTAYELDQQWIIEHASDRTPYICQSQSV 526

Query: 874 NLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L     K+ L  I+  AW  GLK+ YY RS+S    +K +             TD  
Sbjct: 527 NLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD-- 584

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                        +  EC  CQ
Sbjct: 585 ------------INYDECLSCQ 594


>gi|157964543|ref|YP_001499367.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           massiliae MTU5]
 gi|157844319|gb|ABV84820.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           massiliae MTU5]
          Length = 617

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/681 (30%), Positives = 313/681 (45%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y 
Sbjct: 23  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLYE 73

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 74  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 133

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 134 GNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 192

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 193 IRRPTGGDVNRKALNIHHGIAITDKFMKAVENNTDFDLVSPATKK--------------- 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVH 580
                       V  K+ A  LW K+LT   ETG P++ F D  N       ++    V 
Sbjct: 238 ------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 285

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S +     VL++ 
Sbjct: 286 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDF 344

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A 
Sbjct: 345 INKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEAD 404

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+E+ +E+GA                             A++  S             
Sbjct: 405 KASIEIGKEKGACPD--------------------------ALDAGSNE----------- 427

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++ 
Sbjct: 428 ---RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKG 484

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN
Sbjct: 485 FNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLN 544

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L     KK L+ I+ +AW  G+K+ YY RS S    +K +   +        + + N 
Sbjct: 545 IFLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKD--LEEQND 602

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
               +G      +  EC  CQ
Sbjct: 603 KLAEVG------NYEECLACQ 617


>gi|298253144|ref|ZP_06976936.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297532539|gb|EFH71425.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 741

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/749 (23%), Positives = 296/749 (39%), Gaps = 79/749 (10%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-------HHEMQCLYPEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K         H        E     I
Sbjct: 30  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     + +  + F
Sbjct: 90  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGK-QYLENF 148

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD 379
             R A          EK A  + + + +  F  +TPT  N G  +  +  SCFL  + D+
Sbjct: 149 AQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  +  E+Y+       I   + I A   +  +  + FE+G+P
Sbjct: 329 ALFSPYDVEREYGKPFADISVT-EHYDEMVANPRIHK-KYIDAREFFMTIAEIQFESGYP 386

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINL 607
           +I F+D  N  +     G +  SNLC+EI               S       CNLGS+N+
Sbjct: 387 YILFEDTVNRTN--PIEGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLNI 444

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                 N      L +++  AVR L +V +     ++   ++ N    AIGLG M     
Sbjct: 445 AKAMDGN------LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHGF 498

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ----GVF 721
           L   H+ Y S EA++  D     I++HA  AS  LA ER  A+++FK S + +    G +
Sbjct: 499 LAREHMQYGSEEALDFTDMYFMTIAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGNY 558

Query: 722 PIDSI-------GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                           +VRD  A   +   +   W++L+  + + G+ N    A+ PT +
Sbjct: 559 FDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTGS 618

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  +  + Y     
Sbjct: 619 ISYINHSTSSIHPIASRIEIRK------------------------EGKVGRVYYPAA-- 652

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  +    A+EI    +I++ +   + +DQ  SL L+  D  + + L+    
Sbjct: 653 ----YMTNDNMQYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKAQI 708

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 709 YAWRKGIKTLYYIRIRQKA-LEGTEIEGC 736


>gi|295691247|ref|YP_003594940.1| ribonucleoside-diphosphate reductase subunit alpha [Caulobacter
           segnis ATCC 21756]
 gi|295433150|gb|ADG12322.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           segnis ATCC 21756]
          Length = 625

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/685 (30%), Positives = 315/685 (45%), Gaps = 108/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++   RD      G   L DRY L       E  Q  F RVA   A    +    A   Y
Sbjct: 35  EVDRSRDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVATAFA----DDADHAQRVY 85

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  
Sbjct: 86  DYMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTY 145

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 146 WGGVRSIGEKVK-GQGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFL 204

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM  V     + L SP                   
Sbjct: 205 EIRKPSGDFNRKSLNLHHGINITDEFMHAVRDGHKFGLRSPKT----------------- 247

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVH 580
                      +V R++ A ALW+K+L +  +TG P++ F D  N    S Q+ +G  V 
Sbjct: 248 ----------NEVLREVDARALWQKVLELRLQTGEPYLIFSDSVNNAMPSFQRELGLKVR 297

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++ ++      TAVC L S+N     A    ++    + I   +R LDNV
Sbjct: 298 QSNLCSEIMLHTGTDHLGNERTAVCCLSSVN-----AETFLEWRDHPTFIEDVMRFLDNV 352

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID        A  +    R++GLGLMGF S L   ++P+ S  A        + + 
Sbjct: 353 LQDFIDRAPDAAASAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLR 412

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS++L +E+G          D+G                                
Sbjct: 413 READKASIKLGEEKGPCPD----AADRGSVE----------------------------- 439

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L N L
Sbjct: 440 -------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLENLL 492

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            ++    +A+   +  H+GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+
Sbjct: 493 AEKGQNTDAVWGSILEHEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQS 552

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K  L  ++  AW  G+K+ YYLRS+S   V+++   G + K+ A    
Sbjct: 553 QSVNVFLPGDVDKWDLHMLHWTAWERGVKSLYYLRSKS---VQRAAYAGAEDKVAAT--- 606

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
                T    +P   T   EC  CQ
Sbjct: 607 -----TSGFDVPEK-TDYDECLACQ 625


>gi|257870056|ref|ZP_05649709.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804220|gb|EEV33042.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 719

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/709 (22%), Positives = 290/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +        +  +       + ++   + +    F +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTMTFDSVTDKIDYLIEHDYLEEAFIRKYRPAF-IEELYQFL-SEQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFTFKSFMAAYKFYSQYALKTNDGTAYLESYED---RVAFNALYFADGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFL  + DD+  I   +     L++  GG+G   +
Sbjct: 147 IYQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNAIGRGINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGIPFSYIDITKE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 326 DNLVMNPNIRKTK-IKARDLENEISKLQQESGYPYIINIDTANRSN--PIDGKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI        +N   E   +    S NL +    N  D      ++R   R L  V D 
Sbjct: 383 SEILQVQEPSVINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDA 442

Query: 639 N-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++  +  
Sbjct: 443 SDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVE 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELK 750
           S  +A+ER   + +F+ S +  G +  D I    + + +        +   S   W  L 
Sbjct: 503 SNNIAKERGEVFHNFEKSAYADGSYFTDYITGDYQPKSDKIKALFDGVFIPSGEDWAALA 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VK  G+ + N +A+AP  +I+ I   S SI P  + +  +                  
Sbjct: 563 EAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ----------------- 605

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  I  + Y          + +D    + +A+++D   +I+  +  QK +DQ 
Sbjct: 606 -------EKKIGKIYYPA------PYLSNDTIGYYRSAYDMDMRKVIDVYATAQKHVDQG 652

Query: 871 QSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            S+ L++                 + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSMTLFMRSDIPEGLYEWKETSKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|227504051|ref|ZP_03934100.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199381|gb|EEI79429.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 745

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/693 (23%), Positives = 290/693 (41%), Gaps = 71/693 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS 312
           E     ++     R   E   D + +    D  +     F  +LG    +  Y L     
Sbjct: 92  ERLEWLVDNEYYERGFLELYED-EFLCAIYDRAHRAQHRFRTFLGAFKFFTSYALKTFDG 150

Query: 313 --RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
              +E  +      A+ LA  +      A +  + + S  F  +TPT  N+G  +  ++ 
Sbjct: 151 STLLEGYEERVTTTALYLAQGDK---ALAEKLVDDIMSGRFQPATPTFLNAGKAQRGEMV 207

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D+L  I  ++     L+K  GG+    + +R  GA I     ++ GV+P +K
Sbjct: 208 SCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMK 267

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 268 ILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDIT 327

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP +++  + +   +  I  E+Y+       I     I A   +  +
Sbjct: 328 FRLAKENKDMHLFSPYDIAREYGVPMSDMSIT-EHYDELVTNPRIS-HTTIKAREFFTTL 385

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI   ++              + 
Sbjct: 386 AELQFESGYPYILFEDTVNRSNPLK--GHINMSNLCSEILQVNAPSTLDPSGNYATIGQD 443

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+        F+     +T+ TAVR L  V ++     +    K N +  AI
Sbjct: 444 ISCNLGSLNIA-----KAFESPDFGATVETAVRALTQVSELTDIEAVPSIAKGNESMHAI 498

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y   EA++  +     +++HA+  S  LA E+   +  F+ S 
Sbjct: 499 GLGQMNLHGFLASKRIHYGCAEALDFTNFYFLTVTYHALRTSHALAVEKGQRFQGFEDSA 558

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F    +          + ++  E  +   +R  W +LK +V   G+ N+   A+ 
Sbjct: 559 YASGAFFDKYLKQEWVPATKRVEQLFHEAGVRIPTREDWLKLKNQVARDGIYNAYLQAVP 618

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ I   + SI P    + ++                         E  +  + Y 
Sbjct: 619 PTGSISYINDSTASIHPIASKIEIRK------------------------EGRLGRVYYP 654

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                    + +D  +    +F +    +I++ +   + +DQ  SL L+     + + ++
Sbjct: 655 A------PGMTNDNVEYFEDSFTVGYEKIIDTYAMATQHVDQGLSLTLFFTADSTTRDIN 708

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                AW  G+KT YY+R R +  ++ + ++G 
Sbjct: 709 RAQIYAWKAGIKTLYYIRLRQSA-LQGTEVEGC 740


>gi|221236543|ref|YP_002518980.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus NA1000]
 gi|220965716|gb|ACL97072.1| ribonucleoside-diphosphate reductase alpha chain [Caulobacter
           crescentus NA1000]
          Length = 627

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/685 (29%), Positives = 311/685 (45%), Gaps = 108/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y
Sbjct: 37  EVDRSRDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVY 87

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  
Sbjct: 88  DYMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTY 147

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 148 WGGVRSIGEKVK-GQGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFL 206

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM  V     + L SP                   
Sbjct: 207 EIRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKT----------------- 249

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVH 580
                      +V R++ A ALW+K+L +  +TG P++ F D  N    S Q+ +G  V 
Sbjct: 250 ----------NEVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVR 299

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++ ++      TAVC L S+N     A    ++    + I   +R LDNV
Sbjct: 300 QSNLCSEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNV 354

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID        A  +    R++GLGLMGF S L   ++P+ S  A        + + 
Sbjct: 355 LQDFIDRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLR 414

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS++L +E+G          D+G                                
Sbjct: 415 READKASIKLGEEKGPCPD----AADRGSME----------------------------- 441

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L
Sbjct: 442 -------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLL 494

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++    +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+
Sbjct: 495 EEKGQNTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQS 554

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K  L  ++  AW  G+K+ YYLRS+S   V+++   G + K  A    
Sbjct: 555 QSVNVFLPGDVDKWDLHMLHWMAWERGVKSLYYLRSKS---VQRAAYAGAEDKAEAAAGG 611

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
                          T   EC  CQ
Sbjct: 612 FDVPEK---------TDYDECLACQ 627


>gi|325977863|ref|YP_004287579.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177791|emb|CBZ47835.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 719

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 295/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  + +   DF +  LA DL+  +
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDKINYLIDNDYIESEFISKYTPDF-IESLAKDLQ-AQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N  +  + ++   R+           E+ A +    +  
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGKYYL-ESIKDRILFNALYFADGNEELARDLATEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +  SCFL +V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y++
Sbjct: 269 ENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAE-YDK 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 MVANP-NIVKTKIRARDLETEISKLQQESGYPYVVNIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           +        +N + E   +    S NL +    N         +I+   R L  V D  +
Sbjct: 385 VLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDTSS 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S 
Sbjct: 445 IEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESN 504

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   + SF+ S +  G +    I          V++  A +   S   W +L+  
Sbjct: 505 HIARERKQTFVSFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDWAKLRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +                    
Sbjct: 565 VMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|147677926|ref|YP_001212141.1| ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274023|dbj|BAF59772.1| Ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 573

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/625 (26%), Positives = 277/625 (44%), Gaps = 84/625 (13%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVEFYNLLSSF 349
           +++L  RY     NG+ IE P+    RVA  +A  E        E  + A  F+ ++ + 
Sbjct: 8   MKVLAGRYLRRDENGNVIETPEEMCWRVARCVAAAEEKFGADCKEVAEWAERFFAVMDAL 67

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N G    QL++CF+  + D +  IF  L+  A++ K  GG G D++ +R 
Sbjct: 68  EFLPNSPTLINCGPAGGQLAACFVLPLADSIEKIFSTLKYTAIIHKSGGGTGFDFSRLRP 127

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + + GT G++ G + F++V N     + QGG R+GA    L   H D+ EF+  + + 
Sbjct: 128 KNSPVRGTGGRASGPVSFMRVFNAATEEIKQGGVRRGANIGILRADHPDIMEFIACKADE 187

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G       + N +      F   V + + W L                            
Sbjct: 188 GT----FRNFNLSVAATGDFFTAVERGSRWPLSF-------------------------- 217

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                KV+R+  A  ++  +      +G P + F D  N  +P   +G + ++N C E  
Sbjct: 218 ---NGKVYREAEAREIFYSIARHAHASGEPGMLFIDSINRANPTPSLGQISATNPCGEQP 274

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL         D+++L   ++ AVR LD+VI++N   + +  K+
Sbjct: 275 LLPYES----CNLGSINLSRLTKGTGVDWERLGLLVQLAVRFLDDVIEVNRFPLPQIAKA 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG+   L  L IPY S  A+ +A+E M FI   A  AS  LA++RG + 
Sbjct: 331 TLRTRKIGLGVMGWADMLFKLGIPYDSGAALALAEEVMSFILQKAREASAGLARQRGPFP 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           S++ S++    +P                                 + +RN+    IAPT
Sbjct: 391 SWRQSVY----YP--------------------------------ELPLRNATLTTIAPT 414

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I G S  I+P Y  +Y +  +  +  +V N   +  L+     +       K   
Sbjct: 415 GSISAIAGTSSGIEPVYALVYSRLVLDDEKILVINKPFLQYLETEIKPESGENILKKLET 474

Query: 829 G-SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
           G S+ ++  I  + + +  TA EI P W ++  +  QK+ D A S  + L    +  ++ 
Sbjct: 475 GVSLQSLPAIKPEARAVFKTALEIAPDWHLKMQAAFQKYTDNAVSKTINLPANATVDEIA 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSV 911
            I+R+A+ +GLK     R+ S +  
Sbjct: 535 SIFRKAYQLGLKGVTVYRTGSRSGQ 559


>gi|16127722|ref|NP_422286.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus CB15]
 gi|13425218|gb|AAK25454.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           crescentus CB15]
          Length = 619

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/685 (29%), Positives = 311/685 (45%), Gaps = 108/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y
Sbjct: 29  EVDRSRDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVY 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  
Sbjct: 80  DYMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTY 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL
Sbjct: 140 WGGVRSIGEKVK-GQGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFL 198

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM  V     + L SP                   
Sbjct: 199 EIRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKT----------------- 241

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVH 580
                      +V R++ A ALW+K+L +  +TG P++ F D  N    S Q+ +G  V 
Sbjct: 242 ----------NEVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVR 291

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++ ++      TAVC L S+N     A    ++    + I   +R LDNV
Sbjct: 292 QSNLCSEIMLHTGTDHLGQERTAVCCLSSVN-----AETYLEWRDHPTFIEDVMRFLDNV 346

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID        A  +    R++GLGLMGF S L   ++P+ S  A        + + 
Sbjct: 347 LQDFIDRAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLR 406

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS++L +E+G          D+G                                
Sbjct: 407 READKASIKLGEEKGPCPD----AADRGSME----------------------------- 433

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L
Sbjct: 434 -------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLL 486

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++    +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+
Sbjct: 487 EEKGQNTDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQS 546

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K  L  ++  AW  G+K+ YYLRS+S   V+++   G + K  A    
Sbjct: 547 QSVNVFLPGDVDKWDLHMLHWMAWERGVKSLYYLRSKS---VQRAAYAGAEDKAEAAAGG 603

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
                          T   EC  CQ
Sbjct: 604 FDVPEK---------TDYDECLACQ 619


>gi|171779599|ref|ZP_02920555.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281701|gb|EDT47135.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 719

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/709 (23%), Positives = 297/709 (41%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +         + +  +       + ++A  + +   DF +  L+ DL+   
Sbjct: 32  KEALKAFFLENVIPNTMTFESITEKIDYLIANDYIEAEFIGKYSPDF-IENLSKDLQ-AH 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGSQYLESIED---RVLFNALYFADGNEELARDLALEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +  SCFL +V DD+  I  ++     L++  GG+G + +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNAIGRSINSALQLSRIGGGVGINLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD F +   +N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGITIPDKFYELARKNEDMYLFSPYSVEREYGVPYSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++        V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 326 DKMVANP-NIVKTKIKARDLETEISKLQQESGYPYVINIDTANRTN--PIDGKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +E+        +N + E   +    S NL +    N         +I+   R L  V D 
Sbjct: 383 SEVLQVQKPSIINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDT 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +  ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  
Sbjct: 443 SSIESVPTIKHGNEQAHTFGLGAMGLHTYLAQNHIHYGSPESIEFTNIYFMLLNYWTLVE 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELAMN-RTSRLPWDELK 750
           S ++A+ER   +  F+ S +  G +       D +     V++  A +   S   W EL+
Sbjct: 503 SNQIARERKQTFVGFEKSKYADGSYFDKYITGDFVPKSDRVKELFAEHFIPSGKDWAELR 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   G+ + N +A+AP  +I+ I  VS S+ P  Q +  +                  
Sbjct: 563 DAVMIDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ----------------- 605

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                  E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ 
Sbjct: 606 -------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQG 652

Query: 871 QSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L+L                 + + L  +   A+  GLK+ YY+R+
Sbjct: 653 LSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGLKSIYYIRT 701


>gi|256848139|ref|ZP_05553583.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715199|gb|EEU30176.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 723

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/714 (23%), Positives = 290/714 (40%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        +          + ++   + +   +F +  L + LK  +
Sbjct: 34  KLALDDFIKNNVEPNTKHFASVQERLTWLIDHDYLEEGFIRQYRNEF-IDKLYDYLK-SK 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + + +  RVAM         E  A++  + L +
Sbjct: 92  HFHFHSFMAAYKFYAQYALRTNDKEYYL-ENYIDRVAMNALYLANGNEDLAMDLAHELIN 150

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  +  SCF     D++  I   +     L+K  GG+G + T +
Sbjct: 151 QRYQPATPTFLNTGRKRRGEFVSCFEIQTTDNMNTIGRTINSALQLSKIGGGVGINLTNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 211 REAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIVEFLGAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V  +    LFSP +V  ++       +I  E Y+ 
Sbjct: 271 ENADEKIRIKTLSLGVTVPDKFYELVENDEDMYLFSPYDVERVYGEPFAYVDITKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E    +KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 330 LVANDE-ITKKKINARDLEDEISKLQQESGYPYIVNIDTENRAN--PIDGKIIMSNLCSE 386

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N+      N  +      +IR   R L ++
Sbjct: 387 IAQVQKPSVVNDDQTYQELGTDVSCNLGSTNIA-----NMMETPDFGKSIRAITRGLTHI 441

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            DI N   +   K+ N    AIGLG MG    L   HI Y SP A+E        +++  
Sbjct: 442 SDIENLDIVPSIKRGNARSHAIGLGAMGLHGYLAKHHIQYGSPVALEFTSVYFMLLNYWT 501

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWD 747
           + AS E+A E +  ++ F  S +  G +    I      + E        +   S   W 
Sbjct: 502 LVASHEIAVERQETFADFAKSAYADGSYFDKYITKDWGPQSEAVQELFAGIFIPSIDDWK 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK  +   G+ N+  +A+AP  + + I   + S+ P    +  +               
Sbjct: 562 QLKAAIMKDGIYNAYRLAVAPNGSTSYIGDSTSSLQPIINKIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E MI  + Y          + +D    + +A++ D   +I++ +  Q+ +
Sbjct: 608 ----------EKMIGKIYYPA------PYLSNDTMPYYKSAYDTDMRSVIDTYAAAQQHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ+ S+ L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 652 DQSLSMTLFMRSTIPEGMYEWKDGRTDKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|260202189|ref|ZP_05769680.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T46]
          Length = 694

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/656 (25%), Positives = 272/656 (41%), Gaps = 69/656 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 215 KLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP +V  ++ +   +  +  + YE   D        KI A   ++ 
Sbjct: 275 TFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIR--KTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+              +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRAN--PIDGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIA-----KTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRK------------------------EGKIGRVYY 601

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
                     + +D  + +  A+EI    +I++ +   + +DQ  SL L+  + + 
Sbjct: 602 PA------PYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTAT 651


>gi|126725814|ref|ZP_01741656.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
 gi|126705018|gb|EBA04109.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
          Length = 757

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/659 (25%), Positives = 269/659 (40%), Gaps = 88/659 (13%)

Query: 299 QILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G  +E   +  + R+A  LA  E + +    +FYN L  F F+ +  
Sbjct: 11  QIWDMKYRLKDEDGKALETSVEDSWRRIANDLASVEKDPKAWEGKFYNALEDFKFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRAVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAVV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDSMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAKK----DAA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  + GW L           ++G +                 
Sbjct: 187 RLRMFNVSVLITDPFMEAVKADKGWDL-----------VFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW  ++   +E   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTVQARDLWDSIMESTYEFAEPGVIFIDRINKMNNLNYCESIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    A+      Q D   LA  + TAVR++DNV+D +   +E   + 
Sbjct: 276 --YGACLLGSINLARLVADPFGKAAQLDEPALADLVTTAVRMMDNVVDASKFPLEAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA  +++  ++ I+  A  AS  LA E+GA+ 
Sbjct: 334 AAAKRRIGLGVTGLADALLMVGVRYGSEEAARLSERWLKAIARAAYLASAHLAGEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F+   +   G           E  D             ++K  +   G+RN+   +IAP
Sbjct: 394 LFEAEPFLASGSL---------EDMD------------QDVKDAIAENGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  D    
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YSVKMWRDKFGD 485

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                       +L      A  + P+  +   S  QKWID + S  +   E  S     
Sbjct: 486 A-----------ELPDYFVNAQTLAPLDHVRMQSAAQKWIDSSISKTINCPEDISFDDFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            +Y  AW  G K     R  + T    +  +  D    A    D    +  L  P S  
Sbjct: 535 EVYMAAWDQGCKGCTTYRPNAVTGSVLTVSETSDAAPEADVGADVVYLSEPLERPQSLE 593


>gi|311115216|ref|YP_003986437.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
 gi|310946710|gb|ADP39414.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
          Length = 740

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/766 (22%), Positives = 298/766 (38%), Gaps = 95/766 (12%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEK---------------LRREVLTTVYKKPQKA 243
           +T    S+   I    +Y  + A   L                 L        +     +
Sbjct: 20  DTNTASSTAERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFAS 79

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           TH  +  L   Y+      G  +    +   +                   +LG    Y 
Sbjct: 80  THERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTF--------GTFLGAFKFYT 131

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y L     + +  + F  R A          EK A+ + + + +  F  +TPT  N G 
Sbjct: 132 SYALKTFDGK-QYLENFAQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGK 190

Query: 364 -RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +  +  SCFL  + D++  I   +     L+K  GG+    T +R LGA I     +S 
Sbjct: 191 AQRGEAVSCFLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSS 250

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P +K+  D+    NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++  
Sbjct: 251 GVVPVMKLLEDSFSYANQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLG 310

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             IPD+  +   +     LFSP +V   +     +  +  E+Y+       I   + I A
Sbjct: 311 VVIPDITFELAKRKEKMALFSPYDVEREYGKPFADISVT-EHYDEMVANPRIHK-KYIDA 368

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590
              +  +  + FE+G+P+I F+D  N  +     G +  SNLC+EI              
Sbjct: 369 REFFMTLAEIQFESGYPYILFEDTVNRTN--PIEGRITMSNLCSEILQTQEASTYNADLS 426

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKS 649
            S       CNLGS+N+             L +++  AVR L +V +     ++   ++ 
Sbjct: 427 YSHVGRDISCNLGSLNIAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRG 480

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-Y 708
           N    AIGLG M     L   H+ Y S EA++  D     +++HA  AS  LA ERG  +
Sbjct: 481 NAEGHAIGLGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAF 540

Query: 709 SSFKGSLWDQ----GVFPIDSI-------GLLAEVRDELA---MNRTSRLPWDELKKRVK 754
           +SFK S + +    G +                +VRD  A   +   +   W++L+  + 
Sbjct: 541 ASFKTSAYAKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEIL 600

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ N    A+ PT +I+ I   + SI P    + ++                      
Sbjct: 601 RDGIYNEYLQAVPPTGSISYINHSTSSIHPIASRIEIRK--------------------- 639

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E  +  + Y          + +D  +    A+EI    +I++ +   + +DQ  SL 
Sbjct: 640 ---EGKVGRVYYPAA------YMTNDNMQYFKDAYEIGWKAIIDTYAEATQHVDQGLSLT 690

Query: 875 LYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L+  D  + + L+     AW  G+KT YY+R R    +E + ++G 
Sbjct: 691 LFFPDTTTTRDLNKAQIYAWRKGIKTLYYIRIRQKA-LEGTEIEGC 735


>gi|317052120|ref|YP_004113236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
 gi|316947204|gb|ADU66680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
          Length = 725

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/645 (24%), Positives = 272/645 (42%), Gaps = 80/645 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYN 344
           R  +       +L  RY+L    G  +E  +    RVA  +AL +    + E+    F++
Sbjct: 6   RKVSLTETAETVLQRRYYLKDAQGHPVENWEKLCRRVANAVALPDRELDDYEEVRDHFFS 65

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L+ S  F+ ++P L N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G  +
Sbjct: 66  LIYSLDFLPNSPCLMNAGTGIGQLSACFVLPVEDSMEGIFTAVKNGALVHKTGGGTGYSF 125

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R   A +  T G + G + F  V +     + QGGKR+GA    +   H D+ +F+ 
Sbjct: 126 SRLRPRNATVSSTQGVASGPLSFAAVFDVATETIKQGGKRRGANMGVMRVDHPDIMDFIC 185

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +    +D+ R ++ N +  I D FM+ +     + L  P                    
Sbjct: 186 AK----EDQTRFNNFNFSVAITDEFMQALYDEREYALVDPVTKE---------------- 225

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      +   ++A  ++ K++ + +  G P + F D  N  +P   +G   ++N 
Sbjct: 226 -----------IVSSLNARTVFDKIVDLAWHNGEPGVLFIDAANRANPTPQLGEFEATNP 274

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL       + DYD+LA T R A R LDNVID N   I 
Sbjct: 275 CGEQWLLPYES----CNLGSINLGNFVEGGRVDYDRLARTTRLATRFLDNVIDCNVFPIP 330

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + K+     R IGLG+MG    L  + + YAS E  ++  E M++I   +   S+ELA+ 
Sbjct: 331 EIKEMTMKTRKIGLGIMGMHDMLIQMGLSYASNEGRKLCAEVMKYIRTISEETSIELAKV 390

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G + +F                       + A+N  +                RN+   
Sbjct: 391 KGPFPAF-----------------------DPAINTYT--------------PRRNAALT 413

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISD 823
           +I PT T++ I   +   +P +  + VK  M GD   +VN       +    +   +++ 
Sbjct: 414 SIQPTGTVSMIADCASGCEPYFSIVMVKHVMDGDKLLMVNKHFEEIARAEGFYSTELMAR 473

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLDE-PS 881
           +    G++   E IP   ++I  TA +I P   I+     Q+  +D + S  + +    +
Sbjct: 474 V-ADSGTVVGHEEIPVKWQEIFCTAQDITPSDHIQMQGILQQSGVDSSISKTINMPNTAT 532

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            + +   Y   + MG K     R  S      +T    +      
Sbjct: 533 KEDVRLAYLMGYEMGCKGLTVYRDGSRDGQVLNTKSASEASQKEA 577


>gi|322374375|ref|ZP_08048889.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
 gi|321279875|gb|EFX56914.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
          Length = 719

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 292/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFIKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +  F       +IR  VR L  V
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N      GLG MG  S L    I Y S E++E        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSHESIEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ERG  + +F+ S +  G +         +     V++    +   S   W 
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAADWA 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +               
Sbjct: 560 ELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|257882207|ref|ZP_05661860.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257817865|gb|EEV45193.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
          Length = 719

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/714 (22%), Positives = 295/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  E+
Sbjct: 32  KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F+F  ++     Y +Y L  N     +E  +    RVA          E+ A+   + +
Sbjct: 90  HFSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEM 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G  R  +L SCFLT V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSA 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +      I  E  
Sbjct: 267 KKENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGVPFSYVNITAEYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              A+       +KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 HLVANPNIR--KQKIKARDLENEISKLQQESGYPYVINIDTANREN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N++    +  F       ++RT  R L 
Sbjct: 383 SEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNF-----GQSVRTMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +    +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++
Sbjct: 438 FITDASDIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   + +F+ S +  G +    +    + + E        +   +   
Sbjct: 498 WTLVESNNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK+ V   G+ + N +A+AP  +I+ I   S SI P  + +  +             
Sbjct: 558 WNALKQAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + N E IP      + +A+++D   +I+  +  Q+
Sbjct: 606 ------------EKKIGKIYYPAPYLSN-ETIP-----YYTSAYDMDMRKVIDVYAMAQQ 647

Query: 866 WIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++                 + + L+     A+  G+K+ YY+R+
Sbjct: 648 HVDQGMSLTLFMRSEIPEGIYEWKTTTKQTTRDLNIFRHYAFHKGIKSIYYVRT 701


>gi|306833074|ref|ZP_07466205.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
 gi|304424783|gb|EFM27918.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
          Length = 719

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/707 (22%), Positives = 295/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  +++   DF +  +A DL+  +
Sbjct: 32  KEALKAFFRENVIPYSMTFDTIIDKINYLIDNDYIESEFINKYTPDF-IETVAKDLQ-AQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N  +  + ++   R+           E+ A +    +  
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGKHYL-ESIEDRILFNALYFADGNEELARDLATEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +  SCFL +V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y++
Sbjct: 269 ENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAE-YDK 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 MVANP-NIVKTKIRARDLETEISKLQQESGYPYVVNIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           +        +N + E   +    S NL +    N         +I+   R L  V D  +
Sbjct: 385 VLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDTSS 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S 
Sbjct: 445 IEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESN 504

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +    I          V++  A +   S   W +L+  
Sbjct: 505 HIARERKQTFVGFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDWAKLRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +                    
Sbjct: 565 VMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 655 LTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|332522761|ref|ZP_08399013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314025|gb|EGJ27010.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 719

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/714 (23%), Positives = 293/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+       +   +  +       + ++   + +   +F +  LA  LK E 
Sbjct: 32  KEALKAFFKENVLPNTKQFSSITDKVTFLIENDYIETAFIQKYRPEF-IEELAAILKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F  ++     Y +Y L  N     +E  +   M  A+  A      E+ A +    +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGDLYLESIEDRVMFNALYYA---DGNEELAKDLAIEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP ++   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIEREYGIAFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +      +I   + + A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 326 DELVANPKITKTK-LRARDLETEISKLQQESGYPYIINIDTANKTN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +  F       +I+   R L 
Sbjct: 383 SEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++
Sbjct: 438 YVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESVEFTDIYFMLMNY 497

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+E    +  F+ S +  G +    +      + +L      +        
Sbjct: 498 WTLVESNNIARERHTTFVGFEKSKYADGTYFDKYVTGEFVPKSDLVKELFKSHFIPQASD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +             
Sbjct: 558 WEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + + IP      + +A+++D   +I+  +   +
Sbjct: 606 ------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQ 647

Query: 866 WIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|126463986|ref|YP_001045099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126105797|gb|ABN78327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 755

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/661 (24%), Positives = 270/661 (40%), Gaps = 89/661 (13%)

Query: 299 QILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G  ++   +  + R+A  LA  E +       FY+ L  F F+ +  
Sbjct: 11  QIWDMKYRLKDGAGHPVDGSVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRTVTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L            +G +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWEL-----------TFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A       + D  +L   +R AVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSVNLARLVAKPFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+ 
Sbjct: 334 AQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   LA    + +  ++++  ++T G+RN+   +IAPT
Sbjct: 394 LFEADKY-------------------LASGSLTHMD-EDVRAAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW E M        
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF 887
                       L      A  + P+  +   +  QKWID + S  +   E  G ++   
Sbjct: 486 ----------APLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFAD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSC 944
           +Y  AW  G K     R    T    S  +         P          T  L  P++ 
Sbjct: 536 VYLAAWDQGCKGCTTYRPNEVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAAL 595

Query: 945 T 945
            
Sbjct: 596 E 596


>gi|77465546|ref|YP_355049.1| ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
 gi|77389964|gb|ABA81148.1| Ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
          Length = 755

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/661 (24%), Positives = 269/661 (40%), Gaps = 89/661 (13%)

Query: 299 QILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G  ++   +  + R+A  LA  E E       FY+ L  F F+ +  
Sbjct: 11  QIWDMKYRLKDGAGHPVDGSVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRTVTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L            +G +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWEL-----------TFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A       + D  +L   +R AVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSVNLARLVAKPFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+ 
Sbjct: 334 AQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   L     + +  ++++  ++T G+RN+   +IAPT
Sbjct: 394 LFEADKY-------------------LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW E M        
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF 887
                       L      A  + P+  +   +  QKWID + S  +   E  G ++   
Sbjct: 486 ----------APLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFAD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSC 944
           +Y  AW  G K     R    T    S  +         P          T  L  P++ 
Sbjct: 536 VYLAAWDQGCKGCTTYRPNEVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAAL 595

Query: 945 T 945
            
Sbjct: 596 E 596


>gi|297567588|ref|YP_003686559.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|297567763|ref|YP_003686734.1| NrdI protein [Meiothermus silvanus DSM 9946]
 gi|296852037|gb|ADH65051.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|296852212|gb|ADH65226.1| NrdI protein [Meiothermus silvanus DSM 9946]
          Length = 692

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/678 (24%), Positives = 285/678 (42%), Gaps = 68/678 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--IN 310
           +     IEEG           +F  +   ++L +   F F  ++ +   Y  Y L     
Sbjct: 46  KRLETLIEEGYYEDFFARYTPEF--LQEIHELAFSYRFEFESFMAISKFYKDYALKTGDK 103

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
           G  +E      + VA+ LA      E +A  +   +    +  +TPT  N+G  R  +L 
Sbjct: 104 GQYLEDYPERVVAVALHLA---KGDEAQARAYVRAMMERRYQPATPTFLNAGRARRGELV 160

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I   L     L+K  GG+  + + +R  G  I G  G ++GV+P +K
Sbjct: 161 SCFLLEVDDSLDSIGYNLNAAMQLSKIGGGVALNLSRLRARGEPIKGVEGAAKGVVPVMK 220

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     +Q G+RKGA   YL  +H D+EE L+ +K   D++ R   +     +PD F
Sbjct: 221 LLEDAFNYADQMGQRKGAGAVYLNIFHWDLEEVLETKKINADEKSRIQTLALGLVVPDKF 280

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +   + +F+P  V     +   E +     YE   +  E    R + A  +  ++
Sbjct: 281 FQLAAEGKPFYVFAPYSVYRAFGVPLDEMD-LDTRYEELLEHPE-VKKRPLDAREILTRI 338

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P++ ++   N  +P + +G +  SNLCTEI    +                
Sbjct: 339 ARLQFESGYPYLIYRSTANRANPLKGLGQIKMSNLCTEIFQIQTPSRVGPYGTPEVVGYD 398

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N++            L  ++RTA   L  V D +    +    ++N    AI
Sbjct: 399 VSCNLGSLNIVNVMEGR-----ALRESVRTATDALTAVSDQSEVAQVPGVARANRELHAI 453

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSL 715
           GLG M     L    IPY S EA E A      ++++++  S+E+A+     +  F+GS 
Sbjct: 454 GLGAMNLHGYLAKNEIPYESAEAREFARAFFMAVNYYSLERSMEIARARGQTFVGFEGSD 513

Query: 716 WDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G +    +        E        M       W  L ++V+  G+ ++  +AIAPT
Sbjct: 514 YASGAYFAKYLERDWRPTGESVKDLFAGMPLPGPKEWARLAEQVQEHGLYHAYRLAIAPT 573

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   + S+ P    +  ++  +        +L  E     LW             
Sbjct: 574 QSISYLQNATPSVAPITDLIETRTYGNATTYYPVPYLSPE----TLW------------- 616

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFI 888
                          + +A+ +D   +I+  +  Q+ +DQ  S  L++D  +  ++L  +
Sbjct: 617 --------------YYKSAYRMDMYRVIDLVAGIQEHVDQGVSTVLFVDSQTSTRELARL 662

Query: 889 YRQAWLMGLKTTYYLRSR 906
           Y  AW  GLK+ YY R++
Sbjct: 663 YIYAWQKGLKSLYYTRTK 680


>gi|228945049|ref|ZP_04107410.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814718|gb|EEM60978.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 682

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|283782687|ref|YP_003373441.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
 gi|283441659|gb|ADB14125.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
          Length = 741

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 172/749 (22%), Positives = 295/749 (39%), Gaps = 79/749 (10%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-------HHEMQCLYPEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K         H        E     I
Sbjct: 30  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     + +  + F
Sbjct: 90  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGK-QYLENF 148

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD 379
             R A          EK A  + + + +  F  +TPT  N G  +  +  SCFL  + D+
Sbjct: 149 AQRAAAVALELADGDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDAKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  +  E+Y+       I   + I A   +  +  + FE+G+P
Sbjct: 329 ALFSPYDVEREYGKPFADISVT-EHYDEMVANPRIHK-KYIDAREFFMTIAEIQFESGYP 386

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINL 607
           +I F+D  N  +     G +  SNLC+EI               S       CNLGS+N+
Sbjct: 387 YILFEDTVNRTN--PIEGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLNI 444

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                        L +++  AVR L +V +     ++   ++ N    AIGLG M     
Sbjct: 445 AKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHGF 498

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ----GVF 721
           L   H+ Y S EA++  D     +++HA  AS  LA ER  A+++FK S + +    G +
Sbjct: 499 LAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGNY 558

Query: 722 PIDSI-------GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                           +VRD  A   +   +   W++L+  + + G+ N    A+ PT +
Sbjct: 559 FDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTGS 618

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  +  + Y     
Sbjct: 619 ISYINHSTSSIHPIASRIEIRK------------------------EGKVGRVYYPAA-- 652

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  +    A+EI    +I++ +   + +DQ  SL L+  D  + + L+    
Sbjct: 653 ----YMTNDNMQYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKAQI 708

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 709 YAWRKGIKTLYYIRIRQKA-LEGTEIEGC 736


>gi|67459101|ref|YP_246725.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           felis URRWXCal2]
 gi|67004634|gb|AAY61560.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia felis
           URRWXCal2]
          Length = 607

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 211/681 (30%), Positives = 310/681 (45%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y 
Sbjct: 13  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPATKK--------------- 227

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVH 580
                       V  K+ A  LW K+LT   ETG P++ F D  N       ++    V 
Sbjct: 228 ------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S +     VL++ 
Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDF 334

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A 
Sbjct: 335 INKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEAD 394

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+E+ +E+GA                             A++  S             
Sbjct: 395 KASIEIGKEKGACPD--------------------------ALDAGSNE----------- 417

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++ 
Sbjct: 418 ---RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKG 474

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN
Sbjct: 475 FNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLN 534

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   +      D   
Sbjct: 535 IFLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADK-----VSHDVLKADFKDLEK 589

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
               L       +  EC  CQ
Sbjct: 590 QNDKLAEAG---NYEECLACQ 607


>gi|30261451|ref|NP_843828.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Ames]
 gi|50196926|ref|YP_052620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|50082988|gb|AAT70128.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 694

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|260662381|ref|ZP_05863276.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553072|gb|EEX26015.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 721

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 294/714 (41%), Gaps = 85/714 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     +  PQ            +      ++ +   +L +   +F +  L   ++    
Sbjct: 36  KAYFKDHIIPQTVRFQSPAKRRAKLVA---DDYLDGAVLDQYPAEF-IDQLEARVR-AHH 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++G    Y +Y +  N  +    + +  RV           ++ A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYTQYAMKTNDGKR-FLEDYNDRVVANALYLARGDQQLAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP +V           ++  E Y+R 
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVERELKTPFSYVDLTKE-YDRL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ISA  L +K+  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 329 VANPR-IKKTAISARELEQKISRLQQESGYPYILNIDHANRDN--PVAGKIIMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N+     +N          +  AVR L NV 
Sbjct: 386 LQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVRALTNVT 440

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     ++++++
Sbjct: 441 DTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLALNYYSL 500

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+ER   ++ FK S +  G +  D +     ++ E        ++  +   W  
Sbjct: 501 LASHQIAKERDETFAGFKDSRYADGSYFDDYVTKPFTLKFEKNRAAFSGVHLPTTADWQA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK+ V+T G+ + N +A+AP  +I+ +   S S+ P  Q +  +  N  G       +L 
Sbjct: 561 LKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTPITQLVEQRQENKVGALFYPAPYLS 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           NE                                   +  A+++D   +I++ +  QK +
Sbjct: 621 NE-------------------------------TLPYYTPAYDLDQRKIIDTYAVAQKHV 649

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + + L+ +   AW  G+K+ YY+R+
Sbjct: 650 DQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIRT 703


>gi|239947954|ref|ZP_04699707.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922230|gb|EER22254.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 616

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/681 (30%), Positives = 309/681 (45%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y 
Sbjct: 22  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLYE 72

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 73  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 132

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+ 
Sbjct: 133 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIG 191

Query: 465 LRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 192 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPATKK--------------- 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVH 580
                       V  K+ A  LW K+LT   ETG P++ F D  N       ++    V 
Sbjct: 237 ------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 284

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S +     VL++ 
Sbjct: 285 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDF 343

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+    T+ +AK S    R++GLG+MGF S L +  +P  S        +  E+IS  A 
Sbjct: 344 INKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEAD 403

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+E+ +E+G                              A++  S             
Sbjct: 404 KASIEIGKEKGVCPD--------------------------ALDAGSNE----------- 426

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++ 
Sbjct: 427 ---RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKG 483

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN
Sbjct: 484 FNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLN 543

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L    S K L+ I+ +AW  G+K+ YY RS S    +K +        + VP  D   
Sbjct: 544 IFLPGNISKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVS--------HDVPKADFKD 595

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                   +   +  EC  CQ
Sbjct: 596 LEKQNDKLAEAGNYEECLACQ 616


>gi|146279531|ref|YP_001169689.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557772|gb|ABP72384.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 753

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/659 (24%), Positives = 271/659 (41%), Gaps = 93/659 (14%)

Query: 299 QILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G  ++   +  + R+A  LA  E + +     FY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKDAAGHPLDGTVEDTWRRIARSLAEVEADPQLWEDRFYAALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRTVTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L            +G +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWDL-----------TFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V++ + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYKTLEARDLWNRIMRSTYDFAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINL-----LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL      A     + D   L   +R AVR++DNV+D +   + +    
Sbjct: 276 --YGACLLGSVNLARLVTGAFSDEARLDLAALDDLVRLAVRMMDNVVDASRFPLPEQANE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA E  +  M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQMKRRIGLGVTGLADALLMVGLRYGSEEAAERTEAWMKAIARSAYLASVDLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   LA    + +  +++++ +++ G+RN+   +IAPT
Sbjct: 394 LFEAEKY-------------------LASGSLTHMD-EDVREAIRSHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D T     +V+   +  LW E M        
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVDYAVR--LWREKMGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                       L      A  + P+  +   +  QKWID + S  +   E  S      
Sbjct: 486 ----------APLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFAD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV-------DGKLNAVPVTDPNSSTHSLG 939
           +Y  AW  G K     R    T    +  +         +     V +TDP     +L 
Sbjct: 536 VYLAAWDQGCKGCTTYRPNEVTGSVLTVSEAAAAPAPTPEKAGEVVYLTDPLDRPAALE 594


>gi|221369551|ref|YP_002520647.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
 gi|221162603|gb|ACM03574.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
          Length = 755

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/661 (24%), Positives = 270/661 (40%), Gaps = 89/661 (13%)

Query: 299 QILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G  ++   +  + R+A  LA  E +       FY+ L  F F+ +  
Sbjct: 11  QIWDMKYRLKDGAGHPVDGSVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRTVTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L            +G +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWEL-----------TFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A       + D  +L   +R AVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSVNLARLVAKPFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+ 
Sbjct: 334 AQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   LA    + +  ++++  +++ G+RN+   +IAPT
Sbjct: 394 LFEADKY-------------------LASGSLTHMD-EDVRAAIRSHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW E M        
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF 887
                       L      A  + P+  +   +  QKWID + S  +   E  G ++   
Sbjct: 486 ----------APLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFAD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSC 944
           +Y  AW  G K     R    T    S  +         P          T  L  P++ 
Sbjct: 536 VYLAAWDQGCKGCTTYRPNEVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAAL 595

Query: 945 T 945
            
Sbjct: 596 E 596


>gi|196040726|ref|ZP_03108025.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
 gi|196028516|gb|EDX67124.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
          Length = 682

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|269850295|gb|AAP25314.2| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Ames]
          Length = 694

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|154415929|ref|XP_001580988.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
 gi|121915211|gb|EAY20002.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
          Length = 614

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/626 (26%), Positives = 274/626 (43%), Gaps = 60/626 (9%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           F    ++++  RY +H   G   E P+  F RVA  LA  ET+KEK   +F  ++ +F F
Sbjct: 20  FTSNAIKVMKARYLVHNEEGKVYETPEQMFTRVAKALASVETDKEKWTKKFEKVMMNFEF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +  TL N+G +   +S+C +  + D L  IF  LQ+ A+L +   G+G  +  +R  G
Sbjct: 80  IPAGRTLANAGAKTDLVSNCVVLHMEDSLDSIFQTLQDAALLQQAGSGIGFPFHKLRPAG 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
                T G S G + FL++  +    + Q G R GA  A +   H D+ EF+  ++  G 
Sbjct: 140 YKCKRTLGSSSGPLSFLRIYAEAFRIIQQHG-RHGANMAIMRVDHPDIIEFIHAKEQPGT 198

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +    D FM+RV +N        D    +    G++    Y   +  A R
Sbjct: 199 ----YENFNFSVAFTDEFMERVIKN--------DPSPWMCKWNGEKMAPRYITRDA-AGR 245

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E      ISA  L  +++ + +  G P   F D  N  +P   +G +   N C E  L+
Sbjct: 246 VENIQPLTISAPELMNEIIHLAWTNGEPGCVFIDTVNKANPLPGLGPIECCNPCGEQFLH 305

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S       CNLG+INL     + + D+  L    RTA+R+LDNV+ +    +++      
Sbjct: 306 SGD----ACNLGAINLEKFVVDGKIDFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFT 361

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MG    L L+ +PY S E    A+E M+ +   AI  S  L  E+G++ +F
Sbjct: 362 NNRRIGLGIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRLGLEKGSFPNF 421

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W                                     K   MRN++   +APT +
Sbjct: 422 EKSVWAD-----------------------------------KVPAMRNTSLTNVAPTGS 446

Query: 772 IANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + +  VS  ++P +   Y + N         VN  L   L+    + + ++  +    G
Sbjct: 447 TSMLLDVSSGVEPYFALAYRRGNCLAGPMKPFVNKHLQKALEDCGCFTDKIMDKI-LETG 505

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
           ++ N+  +P+ L+++  T+ +I     I   +R QK    A S  + +  E +   +   
Sbjct: 506 TLANVTEVPEQLRRVFVTSLDIKAEDHIAMQARVQKHCCNAISKTINFRREATEDDVRAG 565

Query: 889 YRQAWLMGLKTTYYLR--SRSATSVE 912
           + + W  G K     R  SR A  +E
Sbjct: 566 FIEGWKNGCKGLTVYRNGSRDAQVLE 591


>gi|157955313|gb|ABW06028.1| NrdE [Bacillus thuringiensis serovar finitimus]
          Length = 694

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|42780544|ref|NP_977791.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10987]
 gi|42736464|gb|AAS40399.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus ATCC 10987]
 gi|157955323|gb|ABW06036.1| NrdE [Bacillus thuringiensis serovar tochigiensis]
          Length = 694

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 308/714 (43%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|308235082|ref|ZP_07665819.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14018]
          Length = 698

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/723 (23%), Positives = 289/723 (39%), Gaps = 80/723 (11%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           KL        +     +TH  +  L   Y+      G  +    +   +           
Sbjct: 21  KLYVSGYVQEHSMKFASTHERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTF-- 78

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
                   +LG    Y  Y L     + +  + F  R A          EK A+ + + +
Sbjct: 79  ------GTFLGAFKFYTSYALKTFDGK-QYLENFAQRAAAVALELADGDEKAALNYLDEM 131

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    T
Sbjct: 132 LAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDNMESIARGINSALQLSKRGGGVALLLT 191

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I     +S GV+P +K+  D+    NQ G R+GA   Y+   H D+  FLD 
Sbjct: 192 NLRELGAPIKRIENQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYISAHHPDIMRFLDT 251

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +     LFSP +V   +     +  +  E+Y
Sbjct: 252 KRENADEKIRIKSLSLGVVIPDITFELAKRKEKMALFSPYDVEREYGKPFADISVT-EHY 310

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I A   +  +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 311 DEMVANPRIHK-KYIDAREFFMTLAEIQFESGYPYILFEDTVNRTN--PIEGRITMSNLC 367

Query: 586 TEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI               S       CNLGS+N+             L +++  AVR L 
Sbjct: 368 SEILQTQEASTYNADLSYSHVGRDISCNLGSLNIAKAMDG------DLGTSVDLAVRALT 421

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +V +     ++   ++ N    AIGLG M     L   H+ Y S EA++  D     +++
Sbjct: 422 SVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAY 481

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQ----GVFPIDSI-------GLLAEVRDELA--- 737
           HA  AS  LA ERG  ++SFK S + +    G +                +VRD  A   
Sbjct: 482 HAYKASHALAVERGTAFASFKTSAYAKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFN 541

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +   +   W++L+  +   G+ N    A+ PT +I+ I   + SI P    + ++     
Sbjct: 542 VAIPTVSDWEQLRDEILRDGIYNEYLQAVPPTGSISYINHSTSSIHPIASRIEIRK---- 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                               E  +  + Y          + +D  +    A+EI    +I
Sbjct: 598 --------------------EGKVGRVYYPAA------YMTNDNMQYFKDAYEIGWKAII 631

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++ +   + +DQ  SL L+  D  + + L+     AW  G+KT YY+R R    +E + +
Sbjct: 632 DTYAEATQHVDQGLSLTLFFPDTTTTRDLNKAQIYAWRKGIKTLYYIRIRQKA-LEGTEI 690

Query: 917 KGV 919
           +G 
Sbjct: 691 EGC 693


>gi|332638432|ref|ZP_08417295.1| ribonucleotide-diphosphate reductase subunit alpha [Weissella
           cibaria KACC 11862]
          Length = 723

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 306/714 (42%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    ++       +   L   +      + V  ++L +   +F +  L + LK  +
Sbjct: 34  KEALDAFIRENVVPNTLQFDSLRDRFDYLIAHDFVDQKMLQQYSFNF-ITRLYDYLK-AQ 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y +  N S     + +  R+AM         E+ A+   + +  
Sbjct: 92  DFQFKSFMAAYKFYAQYAVKTNDSEY-YVENYIDRIAMNALFYGAGNEELAMNLADEMVH 150

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRSRRGELVSCFILQTTDDMNAIGRVINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +  + GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPIKGISNAASGVVPVMKLLEDSFSYSNQMGQRNGAGVTYLSVFHPDIMSFLATKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   +  NA   LFSP +V   +       +I  E Y+ 
Sbjct: 271 ENADEKVRVKTLSLGVTVPDKFYDLIRSNADMFLFSPYDVEREYGEPFNYIDITAE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +IK ++ I A  L  ++  M  E+G+P++   D  N  +     G V SSNLC+E
Sbjct: 330 MVANPKIKKYK-IRARDLENEISKMQQESGYPYVINIDTVNAAN--PIHGKVISSNLCSE 386

Query: 588 ITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I     + E               CNLGS N++   A   F     A ++ T +R L  V
Sbjct: 387 ILQVQKASEIDNEQQYVTMGSDVSCNLGSTNIVNMMATTDF-----ARSVETMMRALTFV 441

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   +  N    A+GLG MG  +     H+ Y   EA++  +     ++++ 
Sbjct: 442 SDNSDLDIVPSVQNGNRELHAVGLGAMGLHAFFAKNHMYYGDEEALDFTNVYFLMLNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D     A+V++     +  ++  W 
Sbjct: 502 LLASNKIAKERGESFYEFEKSAYADGSYFNKYLMADWSPKTAKVQEIFEQHHFPTKHDWA 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V+  G+ N+  +AIAPT +I+ +   + S+ P    +  +               
Sbjct: 562 MLKESVQKHGLYNAYRLAIAPTGSISYVNDSTASLHPIINKIEERQ-------------- 607

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    +G       D    + +A+ +D   +I+  +  Q+ I
Sbjct: 608 ----------EKKIGKIYYPAPYLGT------DTLPYYESAYNLDMRKVIDVYATAQQHI 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  +L L++                D+ + + L+ +   A+  G+K+ YY+R+
Sbjct: 652 DQGMALTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRMYAYHKGVKSIYYVRT 705


>gi|332561218|ref|ZP_08415536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
 gi|332275016|gb|EGJ20332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
          Length = 755

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/661 (24%), Positives = 269/661 (40%), Gaps = 89/661 (13%)

Query: 299 QILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G  ++   +  + R+A  LA  E E       FY+ L  F F+ +  
Sbjct: 11  QIWDMKYRLKDGAGHPVDGSVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +G+     L +CF + TVPD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGSGRTVTLFNCFVMGTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L            +G +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWEL-----------TFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTLQARDLWNRIMRSTYDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A       + D  +L   +R AVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSVNLARLVAKPFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+ 
Sbjct: 334 AQMKRRIGLGVTGLADALLMVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   L     + +  ++++  ++T G+RN+   +IAPT
Sbjct: 394 LFEADKY-------------------LGSGSLTHMD-EDVRAAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW E M        
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDF 887
                       L      A  + P+  +   +  QKWID + S  +   E  G ++   
Sbjct: 486 ----------APLPDYFVNAQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFAD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSC 944
           +Y  AW  G K     R    T    S  +         P          T  L  P++ 
Sbjct: 536 VYLAAWDQGCKGCTTYRPNEVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAAL 595

Query: 945 T 945
            
Sbjct: 596 E 596


>gi|259046998|ref|ZP_05737399.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036317|gb|EEW37572.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 719

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/719 (22%), Positives = 297/719 (41%), Gaps = 84/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E +   + +           L  +       + ++A  L +    F    +    
Sbjct: 26  LHKDREAVRAFFLEHVNPNTVFFYTLDEKLDYLIEHDYLEAEFLGKYNRKFVKKLMKET- 84

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            Y++ F F  ++     Y +Y +  N  +  + + F  R+           E+ A +   
Sbjct: 85  -YKKKFRFRSFMSAFKFYKQYAMKTNDGQRYL-ERFEDRIVFNALFLADGDEQLAHDLAE 142

Query: 345 LLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G  
Sbjct: 143 EMITQRYQPATPTFLNAGRKRRGELVSCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVS 202

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + VR  G  I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL
Sbjct: 203 LSNVRAAGDPIKKIENASSGVVPIMKLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFL 262

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F + +  +    LFSP +V  ++ +     +I  E
Sbjct: 263 STKKENADEKVRVKTLSLGLVVPDKFYELIKNDDIMYLFSPYDVERIYGVPFSYVDITKE 322

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+   +  EI+  + + A  L  ++  +  E+G+P++   D  N  +     G +  SN
Sbjct: 323 -YDNMVNNPEIRKSK-LRARDLENEISKLQQESGYPYVVNIDTANRVN--PIDGKIIMSN 378

Query: 584 LCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +  FD      ++  AVR 
Sbjct: 379 LCSEILQVQEPSVINNAQEYEHLGTDISCNLGSTNIVNLMKSPDFD-----RSVDVAVRA 433

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D +    +   K  N     IGLG MG  +   L  + Y SPE++E  D     +
Sbjct: 434 LTFVTDHSSIDAVPTVKNGNSKAHTIGLGAMGLHTFFALNQMEYGSPESIEATDLYFRML 493

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSR 743
           +F+ + AS ++A+ER  ++  F+ S +  G +    I    +++ +        +   + 
Sbjct: 494 NFYTLKASNKIAKERGKSFEGFERSKYATGEYFDSYIAEEVQIQSDKVKKIFAKLPIPTV 553

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W +LK+ V + G+ + N +AIAPT +I+ +   S S+ P  + +  +    +G     
Sbjct: 554 EDWKQLKEEVMSGGLYHQNRLAIAPTGSISYVNETSASLHPITRLIEERQEKKTGKTYYP 613

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL N                               D    + +A++ID   +I+  + 
Sbjct: 614 APFLSN-------------------------------DTLPFYKSAYDIDMRKVIDVYAA 642

Query: 863 RQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            QK IDQ  SL L++                ++ + + L+ +   AW  G+K+ YY+R+
Sbjct: 643 AQKHIDQGMSLTLFMRSELPEGLYEWKEGRTNKMTTRDLNILRNYAWNKGIKSIYYVRT 701


>gi|227515315|ref|ZP_03945364.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227086329|gb|EEI21641.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|299783627|gb|ADJ41625.1| Ribonucleoside-diphosphate reductase [Lactobacillus fermentum CECT
           5716]
          Length = 721

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 294/714 (41%), Gaps = 85/714 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     +  PQ            +      ++ +   +L +   +F +  L   ++    
Sbjct: 36  KAYFKDHIIPQTVRFQSPAKRRAKLVA---DDYLDGAVLDQYPAEF-IDQLEARVR-AHH 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++G    Y +Y +  N  +    + +  RV           ++ A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYAQYAMKTNDGKR-FLEDYNDRVVANALYLARGDQQLAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP +V           ++  E Y+R 
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVERELKTPFSYVDLTKE-YDRL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ISA  L +K+  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 329 VANPR-IKKTAISARELEQKISRLQQESGYPYILNIDHANRDN--PVAGKIIMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N+     +N          +  AVR L NV 
Sbjct: 386 LQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVRALTNVT 440

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     ++++++
Sbjct: 441 DTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLALNYYSL 500

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+ER   ++ FK S +  G +  D +     ++ E        ++  +   W  
Sbjct: 501 LASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFEKNRAAFSGVHLPTTADWQA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK+ V+T G+ + N +A+AP  +I+ +   S S+ P  Q +  +  N  G       +L 
Sbjct: 561 LKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTPITQLVEQRQENKVGALFYPAPYLS 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           NE                                   +  A+++D   +I++ +  QK +
Sbjct: 621 NE-------------------------------TLPYYTPAYDLDQRKIIDTYAVAQKHV 649

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + + L+ +   AW  G+K+ YY+R+
Sbjct: 650 DQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIRT 703


>gi|228938566|ref|ZP_04101174.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971445|ref|ZP_04132071.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978058|ref|ZP_04138437.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228781719|gb|EEM29918.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228788312|gb|EEM36265.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821164|gb|EEM67181.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939075|gb|AEA14971.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 682

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++I+   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|300362787|ref|ZP_07058961.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
 gi|300353077|gb|EFJ68951.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
          Length = 626

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/650 (26%), Positives = 288/650 (44%), Gaps = 63/650 (9%)

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     + S  F  
Sbjct: 1   MGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDIISNRFQP 57

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R LGA
Sbjct: 58  ATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGA 117

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D+
Sbjct: 118 PIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADE 177

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP ++   +     +  I  E   +     
Sbjct: 178 KVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY--QNLLNN 235

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   +
Sbjct: 236 PCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVN 295

Query: 593 SSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +                  CNLGS+N+ A   +     DKL   +  +V+ L+ V   + 
Sbjct: 296 TPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSD 351

Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S 
Sbjct: 352 LDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESN 411

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751
           +LA++ GA+  FK S +  G +    I          + E+  +  +   ++  W+EL  
Sbjct: 412 KLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVLPTKEDWEELIT 471

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ +N+  
Sbjct: 472 KIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK-- 529

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                      D+ +     A+E+ P  +I+  +  QK++DQ+ 
Sbjct: 530 ---------------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSI 562

Query: 872 SLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 563 SLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 612


>gi|157955367|gb|ABW06069.1| NrdE [Bacillus thuringiensis serovar galechiae]
          Length = 694

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++I+   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|149277656|ref|ZP_01883796.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
 gi|149231344|gb|EDM36723.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
          Length = 696

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 177/737 (24%), Positives = 304/737 (41%), Gaps = 80/737 (10%)

Query: 209 LIEKEPNYAKVTARFLL-----EKLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I K   +  +    +        L ++   V +       K T         E     I
Sbjct: 1   MITK--KWILLNNEIMTKEDDEFSLHKDKEAVRSYFLDYVNKNT--VFFYTLKEKIDYLI 56

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHIN--GSRIEMP 317
           E+             F+ +    ++ Y + F F+ ++     +  Y L  +     +E  
Sbjct: 57  EQEYYIDF--YQWYTFEQMEEVYNMVYAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERY 114

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTV 376
           +   + VA+ L     +    A  +  LL +  +  +TPT  NSG +   +L SCFL  +
Sbjct: 115 EDRVVAVALFLGQGNVD---HAKAYAELLINQEYQPATPTFLNSGKKRSGELVSCFLDEI 171

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D+L GI  A+     L+   GG+  + + +RG G  I     ++ GV+P +K+  DT  
Sbjct: 172 GDNLNGIGYAIDSAMKLSSIGGGVSFNISKIRGRGESIKDVENRAGGVLPIMKILEDTFS 231

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G+R GA   YL  +H D+EEFLD +K   D++ R   ++    +PD FM+   ++
Sbjct: 232 YANQLGQRPGAGAVYLNVFHTDIEEFLDCKKINVDEKVRIKSLSIGVIVPDKFMELAEKD 291

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               LF P  V   +  Y  E ++  E YE       +   +KI+A  L  K+     E+
Sbjct: 292 EACYLFQPHTVYKAYGKYLDEMDMD-EMYEELLTNSAV-KKKKINARHLMVKIAQTQKES 349

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNLGS 604
           G+P++ FK   N     + +G V  SNLCTEI   S   +  +            CNLGS
Sbjct: 350 GYPYLFFKGNANKGHALKDIGNVKFSNLCTEIMQVSEVSDIEIYGREDQIKYGISCNLGS 409

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+     N      ++   + TA+R L  V D  N   +   +K+N    ++GLG M  
Sbjct: 410 LNIATVMENK-----RIKEAVTTAMRSLTVVSDLTNIAMVPSVQKANKELHSVGLGAMNL 464

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y S EA++  +     ++F++I +S+E+A+E+   +  F+ S +  G + 
Sbjct: 465 HGFLTKNFIMYESKEALDFCNVFFMMVNFYSIQSSMEIAKEKKETFVGFEKSEYANGNYF 524

Query: 723 IDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              I       ++        M   +   W +L   VK  G+ ++  +AIAP  + + I 
Sbjct: 525 SQYIAKDILPVNDKIAKLFEGMAIPTAEDWKQLMANVKEFGLYHAYRLAIAPNQSTSYIM 584

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P    + V+            +L N                            
Sbjct: 585 NATASVMPVVDVIEVREYGDSTTYYPMPYLDN---------------------------- 616

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
              D    + +A+++D   ++   S  QK +DQ  S  L+ +   + + +   Y  A  M
Sbjct: 617 ---DNYFFYKSAYDMDQKNVLRLISVIQKHVDQGISTILHTNTKDNTRDIAKYYIYAHKM 673

Query: 896 GLKTTYYLRSRSATSVE 912
           GLK+ YY R+R A+  E
Sbjct: 674 GLKSLYYTRTRKASIDE 690


>gi|184156150|ref|YP_001844490.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|183227494|dbj|BAG28010.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 721

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 294/714 (41%), Gaps = 85/714 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     +  PQ            +      ++ +   +L +   +F +  L   ++    
Sbjct: 36  KAYFKDHIIPQTVRFQSPAKRRAKLVA---DDYLDGAVLEQYPAEF-IDQLEARVR-AHH 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++G    Y +Y +  N  +    + +  RV           ++ A +  + L + 
Sbjct: 91  FRFKSFMGAYKFYAQYAMKTNDGKR-FLEDYNDRVVANALYLARGDQQLAKDLTDELINQ 149

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  Q+ SCFL  V D +  I  AL     L++  GG+G + + +R
Sbjct: 150 RYQPATPTFLNAGKKRRGQMVSCFLIDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I      S GV+P +K+  D     NQ G+R GA   YL  +H D+  FL+ +K 
Sbjct: 210 AAGDPIKKIENASSGVLPVMKLLEDAFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP +V           ++  E Y+R 
Sbjct: 270 NADEKIRVKTLSLGLVVPDKYYQLLKSNAPMYLFSPYDVERELKTPFSYVDLTKE-YDRL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                      ISA  L +K+  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 329 VANPR-IKKTAISARELEQKISRLQQESGYPYILNIDHANRDN--PVAGKIIMSNLCSEI 385

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N+     +N          +  AVR L NV 
Sbjct: 386 LQPQEPSTLTSDLSYETVGTDISCNLGSTNI-----DNMLQAPDFGRAVEVAVRALTNVT 440

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N  +  IGLG MG  +AL    I Y SPEA+E  +     ++++++
Sbjct: 441 DTTNIEEVPSIAKGNRLYHTIGLGAMGLHTALARRQIEYGSPEALEFTEAYFLALNYYSL 500

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS ++A+ER   ++ FK S +  G +  D +     ++ E        ++  +   W  
Sbjct: 501 LASHQIAKERGETFAGFKDSRYADGSYFDDYVTKPFTLKFEKNRAAFSGVHLPTTADWQA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK+ V+T G+ + N +A+AP  +I+ +   S S+ P  Q +  +  N  G       +L 
Sbjct: 561 LKEAVQTDGLYHRNRLAVAPNGSISYVNETSASLTPITQLVEQRQENKVGALFYPAPYLS 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           NE                                   +  A+++D   +I++ +  QK +
Sbjct: 621 NE-------------------------------TLPYYTPAYDLDQRKIIDTYAVAQKHV 649

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                 + + + L+ +   AW  G+K+ YY+R+
Sbjct: 650 DQGMSLTLFMRSTLPTGLYEWKKPDQPKMTTRDLNRLRNYAWTKGIKSLYYIRT 703


>gi|313890803|ref|ZP_07824428.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120904|gb|EFR44018.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 719

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/714 (23%), Positives = 290/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++       +   +  +       + ++   + +   +F L  LA  LK E 
Sbjct: 32  KEALKAFFEENVLPNTKQFPSITDKIKFLMENDYIETAFIQKYRPEF-LEELATILKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F  ++     Y +Y L  N     +E  +   M  A+  A      E+ A +    +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYYA---DGNEELAKDLAVEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP ++   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYDIEREYGIAFNYIDIT-EKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +            K+ A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 326 DELVANP-NITKTKLRARDLETEISKLQQESGYPYIINIDTANKTN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +  F       +I+   R L 
Sbjct: 383 SEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALT 437

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 YVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLP 745
             +  S  +A+E    +  F+ S +  G +         I     V++    +       
Sbjct: 498 WTLVESNNIARERHTTFVGFEKSQYADGTYFDKYVTGQFIPKSDLVKELFKNHFIPQASD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +             
Sbjct: 558 WQALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + + IP      + +A+++D   +I+  +   +
Sbjct: 606 ------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQ 647

Query: 866 WIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|260425806|ref|ZP_05779786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
 gi|260423746|gb|EEX16996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
          Length = 760

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/647 (25%), Positives = 268/647 (41%), Gaps = 86/647 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +GS I+   +  + R+A  LA  ET+ E     FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKEADGSPIDVTVEDSWRRIARSLASVETDAEGWEQRFYEALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 AGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKA----DSA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L           +YG +                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGSWEL-----------VYGDK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW +++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 219 -VYRTVKARDLWNRIMRATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL              D  +L + + TAVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSINLARLVKQPFEAEAHLDEAELEALVATAVRMMDNVVDASRFPLPQQLEE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +  + Y S EA    +  +  I+  +  ASVELA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMKGLRYGSKEAAAQTEAWLRLIARASYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA      +  D+++  ++  G+RN+   +IAPT
Sbjct: 394 LFDAEKY-------------------LATGNMLNMD-DDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D T     +V+       +   M  DLK   
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVD-------YAVQMWRDLKGDA 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L +    A  +DP   +   +  QKWID + S  +   E  S +    
Sbjct: 487 -----------ELPEYFVNAQTLDPQAHVRMQAAAQKWIDSSISKTINCPEDISFEAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +Y QA+  G K     R    T    S  +  +      P     ++
Sbjct: 536 VYMQAYETGCKGCTTYRPNDVTGSVLSVSESAEKTPADTPELAEEAA 582


>gi|126460402|ref|YP_001056680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
 gi|126250123|gb|ABO09214.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
          Length = 853

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 191/846 (22%), Positives = 350/846 (41%), Gaps = 102/846 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +++  +G++  F  ++L   +E A       +   V       +   +   +L   +   
Sbjct: 3   RVLKLNGSVEPFQPEKLRRSIERAAQD----AGVEVDGAADIKVERDVGSWELADLVHVE 58

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 + P  A+V    LL ++ +E+    + + +                 Y    + 
Sbjct: 59  LLKKAIERPELAEVAKSHLLGRIYKEIFGRDFLRVKS-------------DEEYQRRALA 105

Query: 266 ARLLHESMMDFDLVYLANDLK--YERDFAFEYLGLQILYD-RYFLH-INGSRIEMPQAFF 321
           A      ++  + + L   LK   E D +  Y  L++  +  Y L  ++    E P    
Sbjct: 106 AFEKLAGVIKPEALELLRQLKLRPEFDRSLSYNALRLFTNGNYALRRLDFQLAETP---- 161

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
              +M  A   T      +RA  +Y+ ++S   + ++P  FN+ T     +SCF+  + D
Sbjct: 162 ---SMAAARVATAVARDVERARLYYDYITSLKLIPASPYWFNAWTSKEMFASCFILMIED 218

Query: 379 DL--------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L          I+  L  + ++ +  GG+G D++ +R  G  + G+ G + G I F+K+
Sbjct: 219 CLSSITHPGKRCIYDVLTRSGLIQQAGGGVGYDFSLLRPEGDVVRGSAGVASGPISFMKL 278

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +     + QGGKR+GA    L  WH D+ +F+  +     D     + N +  + D FM
Sbjct: 279 FDANVEVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDV-HLQNFNISVVVDDAFM 337

Query: 491 KR---VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           ++   V ++  + L +P  V  +  L  K  E+      R+    +      ++A  L+R
Sbjct: 338 EKALDVDKDPNYPLVNPRIV--VEKLGIKPIEVL--ELTREVQLPKDATVGSVNAKELFR 393

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV------GVVHSSNLCTEITLNSSSEETAVCN 601
           +++   +++G P + FK   N  +   +V       V   +N C E+          VCN
Sbjct: 394 EIVEGAWDSGDPGLIFKSNMNASNSLLYVNVDGDRYVWFGTNPCAEVPGADKD----VCN 449

Query: 602 LGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           L  INL+                   D+  LA T R  VR LD+ +DI+   ++   ++ 
Sbjct: 450 LTHINLVKFVKEGCSGRTLEEKLECIDWAGLAETARVGVRFLDDAVDISTTGMKDVDETY 509

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+MG    L  L IPYAS +AV + +  + +I  +A+  S ELA+ERG +  
Sbjct: 510 RKIRKIGLGVMGLAEMLIKLEIPYASWDAVTLVNRVLAWIYLNALDESAELARERGPFKY 569

Query: 711 FKGSLWDQGVFPIDSI----------------GLLAEVRDELAMNRTSRLPW-------- 746
           F  S + +GV P+                       E+ D L         W        
Sbjct: 570 FHQSDYARGVIPVLKYQDFVWSRWERVRAAYPPEYRELGDRLKAITYETRRWLDAMAKRF 629

Query: 747 -----DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                 EL ++VK  G+RNS  M++APT   + + G +  ++P +   ++++   G    
Sbjct: 630 GKPTLAELSEKVKG-GVRNSVVMSVAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVE 688

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                V  L+ R LW   +   ++   G + +   +P+D+K + ATA EI   W +   +
Sbjct: 689 YYWPGVEYLRARGLWTPEVRRAVEES-GMLRDAP-VPEDVKHLLATAMEIHWAWHVLMQA 746

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGV 919
             Q+W+DQ  S  + +    +   + + +  AW +G+K     R +S +  V  + +K  
Sbjct: 747 SAQQWVDQGISKTINMPANATKDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGIKQE 806

Query: 920 DGKLNA 925
             K  A
Sbjct: 807 IKKKLA 812


>gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 830

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/653 (24%), Positives = 275/653 (42%), Gaps = 89/653 (13%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Q+   +Y L   +G+ ++   +  + R+A  LA  ET+       FY  L  F F+ +  
Sbjct: 11  QVWDMKYRLKEADGTPVDRSVEDSWRRIARALAAVETDAAVWEDRFYAALEDFRFLPAGR 70

Query: 357 TLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT R   L +CF + TVPD++ GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRRVTLFNCFVMGTVPDNMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 SGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIGAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDAFMEAVKADGSWDLLF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 KVYHTLKARDLWNRIMQATYDYAEPGVIFIDRINKANNLAYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL     +      + D + L   +RTA+R++DN +D +   +E   + 
Sbjct: 276 --YGACLLGSVNLARLVTDPFTDAARLDPEALDDLVRTAIRMMDNTVDASKFPLEAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    +  M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AEAKRRIGLGVTGLADALLMLGLRYGSDEAAAQTEAWMKAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                     RD    + T +   ++++  V   G+RN+   ++APT
Sbjct: 394 LFD--------------------RDAYLASGTMQAMDEDVRAAVAEHGIRNALLTSVAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +++       +   M  D+K   
Sbjct: 434 GTISLYAGNVSSGIEPVFAYEYTRKVLQKDGSRTEEKVID-------YAVQMWRDVK--- 483

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                   +PD        A  + P+  ++  +  QKW+D + S  +   E  S +    
Sbjct: 484 ----GDAPLPD----YFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDISFEAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +Y +A+  G K     R    T    S L   + K  A P     S+  ++G+
Sbjct: 536 VYMEAYETGCKGCTTYRPNDVTG---SVLSVSEAKAAATPGERLRSARKAVGL 585


>gi|297243044|ref|ZP_06926982.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
 gi|296889255|gb|EFH27989.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
          Length = 735

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/749 (23%), Positives = 294/749 (39%), Gaps = 79/749 (10%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-------HHEMQCLYPEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K         H        E     I
Sbjct: 24  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSDYVQEHSMKFASTRERLNYLI 83

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     + +  + F
Sbjct: 84  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGK-QYLENF 142

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDD 379
             R A          EK A+ + + + +  F  +TPT  N G  +  +  SCFL  + D+
Sbjct: 143 AQRAAAVALELADGDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 202

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 203 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 262

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 263 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 322

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  +  E+Y+       I   + I A   +  +  + FE+G+P
Sbjct: 323 ALFSPYDVEREYGKPFADISVT-EHYDEMVANPRIHK-KYIDAREFFMTLAEIQFESGYP 380

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINL 607
           +I F+D  N  +     G +  SNLC+EI               S       CNLGS+N+
Sbjct: 381 YILFEDTVNRTN--PIKGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLNI 438

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                        L +++  AVR L +V +     ++   ++ N    AIGLG M     
Sbjct: 439 AKAMDG------DLGASVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHGF 492

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ----GVF 721
           L   H+ Y S EA++  D     +++HA  AS  LA ER  A++SFK S + +    G +
Sbjct: 493 LAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFASFKTSAYAKPAGKGNY 552

Query: 722 PIDSI-------GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                            VRD  A   +   S   W++L+  +   G+ N    A+ PT +
Sbjct: 553 FDKYTDGSRSLEPRTQAVRDLFARFNVAIPSVSDWEQLRDEILRDGIYNEYLQAVPPTGS 612

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P    + ++                         E  +  + Y     
Sbjct: 613 ISYINHSTSSIHPIASRIEIRK------------------------EGKVGRVYYPAA-- 646

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + +D  +    A+EI    +I++ +   + +DQ  SL L+  D  + + L+    
Sbjct: 647 ----YMTNDNMQYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKAQI 702

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            AW  G+KT YY+R R    +E + ++G 
Sbjct: 703 YAWRKGIKTLYYIRIRQKA-LEGTEIEGC 730


>gi|218896384|ref|YP_002444795.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228900032|ref|ZP_04064268.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228964414|ref|ZP_04125528.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218545317|gb|ACK97711.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228795271|gb|EEM42763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228859646|gb|EEN04070.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 682

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|157955383|gb|ABW06081.1| NrdE [Bacillus thuringiensis serovar sotto]
          Length = 694

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++I+   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|75759354|ref|ZP_00739451.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74493186|gb|EAO56305.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955363|gb|ABW06066.1| NrdE [Bacillus thuringiensis serovar dendrolimus]
 gi|157955375|gb|ABW06075.1| NrdE [Bacillus thuringiensis serovar morrisoni]
          Length = 694

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|229189533|ref|ZP_04316549.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
 gi|228593978|gb|EEK51781.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
          Length = 682

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|228920163|ref|ZP_04083512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839619|gb|EEM84911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 682

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 307/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L   +I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNNIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|218232459|ref|YP_002366134.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           B4264]
 gi|218160416|gb|ACK60408.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus B4264]
          Length = 682

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKAIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESSEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|320546424|ref|ZP_08040739.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
 gi|320448809|gb|EFW89537.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
          Length = 719

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/714 (22%), Positives = 294/714 (41%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +    Y+ E              + +   +   +  
Sbjct: 32  KEALQAFFLENVIPNTMTFNSITDKI--NYLIEHDYLEEAFIRSYSPEFIESLSRDLHAH 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +   +  A+  A      E  A +    +
Sbjct: 90  HFRFKSFMAAYKFYQQYALKTNDGSQYLESIEDRILFNALYFA---DGNEDLAKDLATEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +  SCFL ++ DD+  I  ++     L++  GG+G + +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGEFVSCFLISMTDDMNSIGRSINSALQLSRIGGGVGINLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDILAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELTRNNEDMYLFSPFSVEREYGVPYSYVDITAE-Y 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +         V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 326 DNMVANP-NIVKTKIKARDLETEISKLQQESGYPYVVNIDTANRTN--PIDGKIIMSNLC 382

Query: 586 TEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +E+        +N + E T +     CNLGS N++    +  F       +I+   R L 
Sbjct: 383 SEVLQVQTPSVINDAQEFTKMGTDISCNLGSTNIVNMMTSPDF-----GRSIKAMTRALT 437

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +  ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++
Sbjct: 438 FVSDTSSIESVPTIKHGNEQAHTFGLGAMGLHTFLAQNHIQYGSPESIEFTNIYFMLLNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMN-RTSRLP 745
             +  S ++A+ER   +  F+ S +  G +       D +     V++  A +   S   
Sbjct: 498 WTLVESNKIARERKQTFVGFEKSSYADGSYFDKYITDDYVPKSDRVKELFAKHFIPSGKD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W EL+  V   G+ + N +A+AP  +I+ I  VS S+ P  Q +  +             
Sbjct: 558 WLELRDAVMRDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + E IP      + +A+++D   +I+  +   +
Sbjct: 606 ------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|313884788|ref|ZP_07818542.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619987|gb|EFR31422.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 725

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/717 (23%), Positives = 302/717 (42%), Gaps = 86/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E     + +           L  +       + ++A  +++    F    + +   Y+ 
Sbjct: 36  KEAARAFFLEHVNPNTVFFYTLDEKLDYLIEHDYIEAEFINKYDRAFIKELMQST--YDY 93

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++G    Y++Y L  N  +  +E  +   +  A+ LA  + +    A +  + L
Sbjct: 94  KFRFKSFMGAHKFYNQYALKTNDGKRYLERFEDRIVFNALYLANGDPD---FARKLRDEL 150

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  N+G  R  ++ SCFL  + DD+  I  ++     L+K  GG+G + +
Sbjct: 151 ITQRFQPATPTFLNAGRKRRGEMVSCFLIEISDDMNAIGRSINSALQLSKRGGGVGINLS 210

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I      + GV+P +K+  D+    NQ G+R GA   YL  +H DV  FL  
Sbjct: 211 NLREEGAPIKKVENAASGVVPVMKLFEDSFSYANQLGQRNGAGVVYLSVFHPDVVRFLST 270

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F + V +NA   LFSP +V   +        I  E Y
Sbjct: 271 KKENADEKIRVKTLSLGLTVPDKFYELVAENADMFLFSPYDVEREYGQAFAYVNIT-EEY 329

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E       I+ ++ + A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 330 ENMVHNPNIRKYK-VKARELENEISKLQQESGYPYIINIDTANEAN--PIDGRIVMSNLC 386

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI       +               CNLGS N++    +  F     A +I  AVR L 
Sbjct: 387 SEILQVQKPSKIRDDQSYEEMGMDISCNLGSTNVVNMVQSPNF-----AQSIDVAVRALT 441

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +   K  N     IGLG MG  +   +  I Y S E++E+ +     +++
Sbjct: 442 FVTDHTSIDAVPSVKNGNELQHTIGLGAMGLHTLFAINQIDYGSDESLELTEAYFYAVNY 501

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLP 745
           + + +S ++AQER  ++ +F  S +  G++    I    E++ +        ++  +   
Sbjct: 502 YTLLSSNQIAQERGQSFYNFDKSDYASGLYFDRYIDQPFEIQSDKVKEIMKGIHLPTAED 561

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W  LK++V+  G+ ++   AIAPT +I+ +   S S+ P  + +  +    +G       
Sbjct: 562 WQALKEKVQAHGLYHAYRQAIAPTGSISYVNETSASLHPIIRLIEERQEKKTGKTYYPAP 621

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L N                               D    + + ++ID   +I+  +  Q
Sbjct: 622 YLSN-------------------------------DTIDYYKSVYDIDMRLVIDVYAAAQ 650

Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           K IDQ  S+ L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 651 KHIDQGMSMTLFMRSEIPSGLYPWKKADDNKLTTRDLNILRNYAWNQGIKSIYYVRT 707


>gi|206967719|ref|ZP_03228675.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228907083|ref|ZP_04070947.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|228951832|ref|ZP_04113930.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229043193|ref|ZP_04190916.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|229069002|ref|ZP_04202295.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|229078636|ref|ZP_04211193.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|229126768|ref|ZP_04255780.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|229144055|ref|ZP_04272471.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|229149652|ref|ZP_04277883.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|229177858|ref|ZP_04305231.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|296502032|ref|YP_003663732.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
 gi|206736639|gb|EDZ53786.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228605649|gb|EEK63097.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|228633862|gb|EEK90460.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|228639452|gb|EEK95866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|228656708|gb|EEL12534.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|228704706|gb|EEL57135.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|228714114|gb|EEL65996.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|228726155|gb|EEL77389.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|228807755|gb|EEM54276.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228852587|gb|EEM97377.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|296323084|gb|ADH06012.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
          Length = 682

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 534 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 593

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 594 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 622

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 623 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|284931053|gb|ADC30991.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. F]
          Length = 722

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 179/749 (23%), Positives = 303/749 (40%), Gaps = 93/749 (12%)

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-E 294
           +Y +       +      E     I+     + + E++    L  L   +K E D  F  
Sbjct: 36  LYMQVHVKPRTKKFNSIHERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPS 94

Query: 295 YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++G    Y+ Y L  N  +   E      +  A+ L  K  +  K  +     + S  F 
Sbjct: 95  FMGAFKFYNSYCLKSNDGKEFYETYSERCLMNALFLGGKNFQNVKNILIE---ILSGRFQ 151

Query: 353 CSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N+G  +  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R  G
Sbjct: 152 PATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFG 211

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A I    G++ GVIP +K+  D+    NQ G+R G   AYL   H DV  FLD ++   D
Sbjct: 212 APIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENAD 271

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           ++ R   +     +PD+  +    N    LFSP +V   +     + ++  E Y    + 
Sbjct: 272 EKIRIKSLALGLVVPDITFELAKNNEQMALFSPYDVQREYGKPFSDIKVT-EEYHNMVNN 330

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                   ISA   ++ +  + FE+G+P++ F D     +   + G +  SNLC+EI  +
Sbjct: 331 PR-IKKTYISARKFFQTIAELHFESGYPYLLFDDTV--NNRNPNAGRIVMSNLCSEIVQS 387

Query: 592 SSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DI 638
           S+S E               CNLGS+N+     +     ++   ++  A++ LD+V    
Sbjct: 388 STSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSA 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N       K  N  + A+GLG M     L    I Y SPEA+E  D     ++++A  AS
Sbjct: 444 NLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKAS 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMNRTSRLPW 746
             LA E+   Y++FK S +  G +                  + E+     +   ++  W
Sbjct: 504 NRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADW 563

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L + +K  G+ N++ +AIAPT +I+ +   + SI P    + V+           ++ 
Sbjct: 564 QALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIGRVYSLAYK 623

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +NE                                K     A+E+ P   I+  ++ QK 
Sbjct: 624 LNEHNY-----------------------------KYYKDGAYELGPNPYIDICAQAQKH 654

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D  + + L+  Y +A+     + YY+R R     E   L     + + 
Sbjct: 655 VDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVRQNVLEESENLDWAKDQAST 714

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V                      +CE CQ
Sbjct: 715 V----------------------DCEACQ 721


>gi|30019504|ref|NP_831135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 14579]
 gi|29895048|gb|AAP08336.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus cereus
           ATCC 14579]
 gi|157955304|gb|ABW06021.1| NrdE [Bacillus thuringiensis serovar aizawai]
 gi|157955327|gb|ABW06039.1| NrdE [Bacillus thuringiensis serovar entomocidus]
 gi|157955331|gb|ABW06042.1| NrdE [Bacillus thuringiensis serovar galleriae]
 gi|157955335|gb|ABW06045.1| NrdE [Bacillus thuringiensis serovar kurstaki]
 gi|157955343|gb|ABW06051.1| NrdE [Bacillus thuringiensis serovar tolworthi]
 gi|157955351|gb|ABW06057.1| NrdE [Bacillus thuringiensis serovar colmeri]
 gi|157955379|gb|ABW06078.1| NrdE [Bacillus thuringiensis serovar ostriniae]
 gi|157955395|gb|ABW06090.1| NrdE [Bacillus thuringiensis serovar tohokuensis]
 gi|157955404|gb|ABW06097.1| NrdE [Bacillus thuringiensis serovar wuhanensis]
          Length = 694

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|84516707|ref|ZP_01004066.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
 gi|84509743|gb|EAQ06201.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
          Length = 769

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/651 (24%), Positives = 264/651 (40%), Gaps = 91/651 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E + +    +FY+ L+ F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDISVEDTWHRIAKSLAAVEADPQAWEPKFYDALADFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGASV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 LGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMAVMRCDHPDIEAFITAK----SDAA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM  V     W L                               + 
Sbjct: 187 RLRMFNMSVLITDPFMAAVKAGGDWDLLF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +V++ + A  LW  ++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 QVYKTLKARDLWDTIMQSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+    ++      + D + L   + TAVR++DNV+D +   +   +  
Sbjct: 276 --YGACLLGSINMARLVSDPFSDSAKLDANALTDLVATAVRMMDNVVDASRFPLPAQQHE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    D  M  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AMNKRRIGLGVTGLADALLMVGLRYGSEEAAAQTDAWMHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                           D++++ ++T G+RN+   +IAP
Sbjct: 394 LFDADKYLASGAMQQ---------------------MDDDVREAIRTHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D T     +V+       +   M  DLK  
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGTKTEEEVVD-------YAVQMWRDLK-- 483

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                    +PD        A  + P+  +   +  QKWID + S  +   E  S     
Sbjct: 484 -----GDAPLPD----YFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDAFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL---NAVPVTDPNSS 934
            +Y  AW  G K     R    T    S  +     L   N     DP  S
Sbjct: 535 EVYMAAWDQGCKGCTTYRPNDVTGSVLSVSEEKPQLLISENTPAGGDPEGS 585


>gi|157955359|gb|ABW06063.1| NrdE [Bacillus thuringiensis serovar darmstadiensis]
          Length = 694

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955317|gb|ABW06031.1| NrdE [Bacillus thuringiensis serovar pakistani]
          Length = 694

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955309|gb|ABW06025.1| NrdE [Bacillus thuringiensis serovar canadensis]
          Length = 694

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVEERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|306830971|ref|ZP_07464133.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426994|gb|EFM30104.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 719

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/707 (22%), Positives = 292/707 (41%), Gaps = 68/707 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + ++   + +   DF +  LA DL+  +
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDKINYLIDNDYIEPEFISKYTPDF-IESLAKDLQ-AQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N  +  + ++   R+           E+ A +    +  
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGKYYL-ESIEDRILFNALYFADGNEELARDLATEMIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +  SCFL +V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E Y++
Sbjct: 269 ENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGVPYSYVDITAE-YDK 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V  KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 MVANP-NIVKTKIRARDLETEISKLQQESGYPYVVNIDTANRTN--PIDGKIIMSNLCSE 384

Query: 588 I-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           +        +N + E   +    S NL +    N         +I+   R L  V D  +
Sbjct: 385 VLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDTSS 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S 
Sbjct: 445 IEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVESN 504

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +++E +  +  F+ S +  G +         I     V++  A +   S   W +L+  
Sbjct: 505 HISRERQQTFVGFENSKYADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRDA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +                    
Sbjct: 565 VMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L+L                 + + L  +   A+   +K+ YY+R+
Sbjct: 655 LTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKDIKSIYYIRT 701


>gi|254476564|ref|ZP_05089950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
 gi|214030807|gb|EEB71642.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
          Length = 766

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/661 (24%), Positives = 269/661 (40%), Gaps = 85/661 (12%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E +++     F+N L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDQTVEDSWRRIARDLARAEKDQDAWEETFFNALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGSWELIF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV++ + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYQTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     N      + D + L   + TAVR++DNV+D++   +E   + 
Sbjct: 276 --YGACLLGSINLARLVKNPFEKESELDPEGLKELVATAVRMMDNVVDVSKFPLEAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    +E +  I+  A  ASVELA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLRYGSDEAARQTEEWLHAIARAAYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA      +  ++++  ++  G+RN+   +IAPT
Sbjct: 394 LFDAEAY-------------------LASGNMMNMD-EDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  ++ E   +D     
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGAD----- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + P   ++  +  QKWID + S  +   E  S      
Sbjct: 487 ----------AELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKD 536

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +Y QAW +G K     R    T    S  +  D            +     G        
Sbjct: 537 VYMQAWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADVSETGAAEVVYMS 596

Query: 948 T 948
            
Sbjct: 597 E 597


>gi|157803770|ref|YP_001492319.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           canadensis str. McKiel]
 gi|157785033|gb|ABV73534.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           canadensis str. McKiel]
          Length = 607

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 210/682 (30%), Positives = 308/682 (45%), Gaps = 97/682 (14%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++    +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y
Sbjct: 12  NINNSHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLY 62

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
             +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ 
Sbjct: 63  EYMSKMWFMPATPILSNGGTDRGLPISCFLNETNDSLDDIVNLWTENVWLASRGGGIGSY 122

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+
Sbjct: 123 WGNVRSINEEIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFI 181

Query: 464 DLRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           D+R+  G D  R   +++    I D FM  V  N  + L SP                  
Sbjct: 182 DIRRPIGGDVNRKSLNIHHGIAITDEFMNAVENNTDFNLVSPATKK-------------- 227

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVV 579
                        V  K+ A  LW K+LT   ETG P++ F D  N       ++    V
Sbjct: 228 -------------VTNKVRARDLWIKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQV 274

Query: 580 HSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
             SNLC+EITL +  +      TAVC L S+NL  +F   + D   + S +     VL++
Sbjct: 275 KMSNLCSEITLPTGIDHLGNSRTAVCCLSSLNL-EYFEEWKDDKAFIHSIMLFLDNVLED 333

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A
Sbjct: 334 FINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEA 393

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS+E+ +E+GA                             A++  S            
Sbjct: 394 DKASIEIGKEKGACPD--------------------------ALDAGSNE---------- 417

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
               R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++
Sbjct: 418 ----RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEK 473

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              ++ + S +  H+GS+ ++  +  + K++  TA+EID  WLIE AS R  +I QAQSL
Sbjct: 474 GFNNDQVWSSIATHEGSVQHLTFLSAEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSL 533

Query: 874 NLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   +      D  
Sbjct: 534 NIFLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADK-----VSHDVLKADFKDLE 588

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
              + +       +  EC  CQ
Sbjct: 589 KQNNKIAEAG---NYEECLACQ 607


>gi|157955391|gb|ABW06087.1| NrdE [Bacillus thuringiensis serovar thompsoni]
          Length = 694

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFKKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|81428552|ref|YP_395552.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610194|emb|CAI55243.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 723

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 290/713 (40%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  +      + L         E   +A  L    +DF +  L   L  ++D
Sbjct: 35  EALEAFLEQNVQPNMVTFKSLQDRLNYMVAENYYEADFLKAYSIDF-MERLNQYLI-DQD 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N +   + + F  RV           E  A+   + +   
Sbjct: 93  FHFKSFMAAYKFYAQYALKTNDNGFYL-EDFKDRVFTNALYFADGDEALAMSVADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G  R  +L SCFL    DD+  I   +     L++  GG+G   + +R
Sbjct: 152 RYQPATPTFLNAGRSRRGELVSCFLLQTTDDMNSIGRTINSALQLSRIGGGVGISLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H DV  FL  +K 
Sbjct: 212 GAGDPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDVVAFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V ++A   LFSP  V   +       +I  E Y+  
Sbjct: 272 NADEKYRLKTLSLGLTVPDKYYELVKEDADMYLFSPYSVEREYGQPFSYIDITAE-YDNL 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               E     KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E+
Sbjct: 331 VAN-EAIKKTKIKARDLENEISKLQQESGYPYIVNIDTANKAN--PIDGKIIMSNLCSEV 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +  +               CNLGS N+     +  F       +I T VR L  V 
Sbjct: 388 LQVQTPSQINNRQEYDVLGTDISCNLGSTNIPNMMTSPDF-----GHSIETMVRSLTYVT 442

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D +    +      N     IGLG MG  +      + Y S E+++        +++  +
Sbjct: 443 DHSDIDVVPSVAHGNQLAHTIGLGGMGLHTYFAKNQMMYGSEESIDFTSNYFMLLNYWTL 502

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIG-----LLAEVRDEL-AMNRTSRLPWDE 748
            AS ++A+ERG  + +F+ S +  G +    +        A+V+     +   ++  W  
Sbjct: 503 VASNKIAKERGITFDNFENSKYADGSYFDQYLNTEWAPKTAKVKGLFDGVFIPTQADWAA 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ +   G+ + N +A+AP  +I+ I   S S+ P    +  +                
Sbjct: 563 LKEAIMQDGLYHQNRLAVAPNGSISYINDTSASLQPIVNRVEDRQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    + N      +    + +A++ID   +I+  +  QK +D
Sbjct: 608 ---------EKKIGTIYYPAPGLSN------ETMPYYESAYDIDMRKVIDIYAAAQKHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  S+ L++                D+ + + L+ +   A    +K+ YY+R+
Sbjct: 653 QGMSMTLFMRSTIPAGLYDWKDGRTDKMTTRDLNILRNYAHHKSIKSIYYIRT 705


>gi|54020061|ref|YP_115672.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 232]
 gi|53987234|gb|AAV27435.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 232]
          Length = 720

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 310/775 (40%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 14  QEKSYLSLNANSKIFTNHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 73

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 74  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 133 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 192

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 193 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 253 QGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 312

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+ + Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 313 YDVEKVYQKAFSDISISEKYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 370

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+              +   CNLGS+N+     
Sbjct: 371 DIVNKENAHP--DRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAME 428

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 429 SG----PDFEQMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 484

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 485 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 544

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 545 TFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTP 604

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 605 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 635

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 636 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 695

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 696 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 719


>gi|114765474|ref|ZP_01444584.1| ribonucleoside-diphosphate reductase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542184|gb|EAU45215.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           HTCC2601]
          Length = 762

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/649 (25%), Positives = 272/649 (41%), Gaps = 88/649 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E + E+    F+  L  F ++ +  
Sbjct: 11  QIWDMKYRFKEADGTPIDMSVEDSWRRIARSLASVEKDAERWEETFFEALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAIV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           HG    + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 HGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIAAK----SDSA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNLSVLVTDPFMEAVKADGSWDLKF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYHTVKARDLWNKIMKATYDYAEPGVIFIDRINEANNLNYVEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     +      + D   L + + TAVR++DNV+D +   + + ++ 
Sbjct: 276 --YGACLLGSINLARLVTDPFTDAAEIDDAALETLVATAVRMMDNVVDASRFPLPEQEEE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +  + Y S EA    ++ +  I+  +  ASVELA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMKGLRYGSEEAAAQTEDWLHRIARASYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA      +  +++++ ++T G+RN+   +IAPT
Sbjct: 394 LFDAEKY-------------------LASGNMMNMD-EDVREAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D T     +V+       +   M  DLK   
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVD-------YAVQMWRDLKGDA 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  +DP   +   +  QKWID + S  +   E  S +    
Sbjct: 487 -----------ELPDYFVNAQTLDPQDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV--PVTDPNSS 934
           +Y QA+  G K     R    T    S  +       AV  P  +PN  
Sbjct: 536 VYMQAYETGCKGCTTYRPNDVTGSVLSVSEEKKAAPEAVATPAAEPNQP 584


>gi|31322340|gb|AAP15463.1| ribonucleotide reductase large subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 607

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/690 (30%), Positives = 312/690 (45%), Gaps = 97/690 (14%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           F        +    +      G  IL DRY +       E  Q  F RV+   A    E 
Sbjct: 4   FKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----EN 54

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA 
Sbjct: 55  KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAA 114

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   
Sbjct: 115 RGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIN 173

Query: 456 HIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP          
Sbjct: 174 HPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPATKK------ 227

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RS 571
                                V  K+ A  LW K+LT   ETG P++ F D  N    + 
Sbjct: 228 ---------------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKH 266

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++    V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S + 
Sbjct: 267 HKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIML 325

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     + 
Sbjct: 326 FLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKI 385

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E+IS     AS+E+ +E+G                              A++  S    
Sbjct: 386 FEYISAETDKASIEIGKEKGVCPD--------------------------ALDAGSNE-- 417

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                       R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  
Sbjct: 418 ------------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGPFNVRNKH 465

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  
Sbjct: 466 LERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTP 525

Query: 866 WIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K +   +     
Sbjct: 526 YITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVLKANFK 585

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              + + N      G      +  EC  CQ
Sbjct: 586 D--LGEQNDKLAEAG------NYEECLACQ 607


>gi|157828521|ref|YP_001494763.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933239|ref|YP_001650028.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. Iowa]
 gi|157801002|gb|ABV76255.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908326|gb|ABY72622.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           rickettsii str. Iowa]
          Length = 607

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 210/690 (30%), Positives = 310/690 (44%), Gaps = 97/690 (14%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           F        +    +      G  IL DRY +       E  Q  F RV+   A    E 
Sbjct: 4   FKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----EN 54

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA 
Sbjct: 55  KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAA 114

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   
Sbjct: 115 RGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIN 173

Query: 456 HIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP          
Sbjct: 174 HPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPATKK------ 227

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RS 571
                                V  K+ A  LW K+LT   ETG P++ F D  N    + 
Sbjct: 228 ---------------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKH 266

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++    V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S + 
Sbjct: 267 HKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIML 325

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     + 
Sbjct: 326 FLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKI 385

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E+IS     AS+E+ +E+G                              A++  S    
Sbjct: 386 FEYISAETDKASIEIGKEKGVCPD--------------------------ALDAGSNE-- 417

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                       R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  
Sbjct: 418 ------------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKH 465

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  
Sbjct: 466 LERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTP 525

Query: 866 WIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   + 
Sbjct: 526 YITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADK-----VSHDVL 580

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                D       L       +  EC  CQ
Sbjct: 581 KANFKDLEEQNDKLAEAG---NYEECLACQ 607


>gi|42520094|ref|NP_966009.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696744|ref|ZP_00372286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698281|ref|ZP_00373199.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|99036013|ref|ZP_01315053.1| hypothetical protein Wendoof_01000107 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630021|ref|YP_002726812.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
 gi|42409831|gb|AAS13943.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535205|gb|EAL59286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537070|gb|EAL60196.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592002|gb|ACN95021.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
          Length = 594

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 201/681 (29%), Positives = 317/681 (46%), Gaps = 103/681 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y +D      G  +L DRY +       E  Q  F R+A       ++ ++ A   Y+
Sbjct: 6   INYAKDSKLTDFGKAVLSDRYLIEN-----ESYQDLFARIANYY----SDNKEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVK-GSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK T GD  R+  +++ A  + D FM+ V  +  W L SP                   
Sbjct: 176 LRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPH------------------ 217

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVH 580
                      KV   + A  +W K+LT   ETG P+I F D  N     S ++    + 
Sbjct: 218 ---------NNKVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIK 268

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + +   +   +R    VL++ 
Sbjct: 269 MSNLCSEITLTTGYDHLNKSRTAVCCLSSVNL-EYYEEWKDNKLFIEDIMRFLDNVLEDF 327

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+   + +++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++   A 
Sbjct: 328 INKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQAD 387

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S +LA+E+GA S                    A+  D +                   
Sbjct: 388 IVSKKLAEEKGACSD-------------------AKEVDLME------------------ 410

Query: 756 IGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R ++ +AIAPTA+I+ I G +   I+P   N++++  ++G F V N FL   L +++
Sbjct: 411 ---RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKN 467

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+N
Sbjct: 468 QDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQSQSVN 527

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L+L     K+ L  I+  AW  GLK+ YY RS+S    +K +             TD   
Sbjct: 528 LFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD--- 584

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                          EC  CQ
Sbjct: 585 -----------IDYDECLSCQ 594


>gi|1657993|gb|AAB18239.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 857

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/874 (23%), Positives = 348/874 (39%), Gaps = 185/874 (21%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYDGL--SESDLET 200
           +++  DGT++ F   ++ M + +A           ++ +  +    + D    S  +++ 
Sbjct: 4   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQD 63

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            +                     +  K+  +  T V K            LY E   R I
Sbjct: 64  VVEDV-----------------LMTSKIDGKTFTDVAK---------SYILYREK-RRAI 96

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP-- 317
            E  +   + +                  D       +++L  RY L   +G  IE P  
Sbjct: 97  REEKELMGVKD------------------DLKLTLNAVKVLEARYLLKDEDGKIIETPRQ 138

Query: 318 ----------------------------------------QAFFMRVAMGLALKETEKEK 337
                                                   Q   +R A G   ++   E 
Sbjct: 139 MFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIGKVSPTQEEVLRRAFGYMKEDGIIEG 198

Query: 338 RAVEFYNL------------------LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
              EF +                   +SS  F+ ++PTL N+GT+  QLS+CF+  V D 
Sbjct: 199 TFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDS 258

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  IF  L+  A++ K  GG G  ++ +R     +  T G + G + F+K+ + T   + 
Sbjct: 259 IEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIK 318

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKR+GA    L   H D+ EF+  + +   + +   + N +  + D F  ++  +   
Sbjct: 319 QGGKRRGANMGILNYNHPDIMEFILSKDS---ENKVLSNFNISVGVTDDFFDKLDND--- 372

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                                   +Y    +    K+ ++I A  +W  ++   ++T  P
Sbjct: 373 ------------------------DYVDLVNPRTKKIMKRIKAREIWDAIIDQAWKTADP 408

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
            + F D  N ++P ++VG + S+N C E  L         CNLGSINL  +  + +  D+
Sbjct: 409 GLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D+L  T+ TA R LD+VID N   +E+ KK     R IGLG+MGF   L  L IPY S E
Sbjct: 465 DRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+EI ++ M FI+  +  AS  LA+ER  + ++ GS W+                     
Sbjct: 525 ALEIGEKVMSFINDESHKASQALAEERAVFPAWYGSEWE--------------------- 563

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797
                      K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G 
Sbjct: 564 -----------KEGIK---MRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQ 609

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +   VN     + ++  ++ E ++  +    G++ N+ +I +++KKI  TA EIDP W +
Sbjct: 610 ELLEVNPLFEEKTRELGIYSEELMRQV-AETGNLENV-KINEEVKKIFVTAHEIDPQWHV 667

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q++ D   S  + +  + + + +   YR A  +  K     R +S T    +  
Sbjct: 668 LMQATFQRYCDSGVSKTINMRSDATREDIARAYRMAKDLHCKGITVYRDKSKTVQVLTAG 727

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
                K     V +  +      +    T D  C
Sbjct: 728 TAETKKPEEKEVIELVTKMPDKYLKIDSTFDPAC 761



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 32/159 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+      +       + L ++ V RL    K 
Sbjct: 4   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARL----KD 52

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E+IQD VE  LM S         + + Y+LYRE+R  +R  +            
Sbjct: 53  KERPSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMG-------- 104

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
               + D   ++ N+ +    V EA   L+D   KI+ +
Sbjct: 105 ----VKDDLKLTLNAVK----VLEARYLLKDEDGKIIET 135


>gi|157955371|gb|ABW06072.1| NrdE [Bacillus thuringiensis serovar indiana]
          Length = 694

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 307/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|167648616|ref|YP_001686279.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter sp.
           K31]
 gi|167351046|gb|ABZ73781.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           sp. K31]
          Length = 616

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/685 (29%), Positives = 310/685 (45%), Gaps = 108/685 (15%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           ++   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y
Sbjct: 26  EVDRSRDALLTDFGKTTLEDRYLLPG-----ESYQDMFARVSTAFA----DDADHAQRVY 76

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S   FM STP L N G       SCFL  V D L GI G   EN  LA   GG+G  
Sbjct: 77  DYMSKLWFMPSTPVLSNGGAERGLPISCFLNAVSDSLDGILGVWNENVWLAANGGGIGTY 136

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  VR +G  +    G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL
Sbjct: 137 WGGVRSIGEKVK-GQGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIFHPEIEEFL 195

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++RK +GD  R++ +++    I D FM  V     + L SP                   
Sbjct: 196 EIRKASGDFNRKSLNLHHGISITDEFMHAVRDGHKFGLRSPKTGE--------------- 240

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V R++ A ALW+K+L +  +TG P++ F D  N   P+        V 
Sbjct: 241 ------------VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPKHQQELGLKVR 288

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EI L++  +      TAVC L S+N     A    ++      I   +R LDNV
Sbjct: 289 QSNLCSEIMLHTGVDHLGNDRTAVCCLSSVN-----AETFLEWRDHPMFIEDIMRFLDNV 343

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ID        A  +    R++GLGLMGF S L   ++P+ S  A        + + 
Sbjct: 344 LQDFIDRAPDAAATAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLR 403

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS+ + +E+G          D+G                                
Sbjct: 404 READKASITIGEEKGPCPD----AADRGSME----------------------------- 430

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                  R S+ +AIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L
Sbjct: 431 -------RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKVL 483

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++    +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W++E A+ R   + Q+
Sbjct: 484 EEKGHNTDAVWGSILENEGSVQHLDFLSQDDKDVYKTAFELDQRWVVELAADRTPEVCQS 543

Query: 871 QSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+N++L     K  L  ++ QAW  G+K+ YYLRS+S   V++++  G D     V + 
Sbjct: 544 QSVNIFLPGDVDKWDLHMLHWQAWERGVKSLYYLRSKS---VQRASYAGSD-----VALA 595

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
            P +   +       T   EC  CQ
Sbjct: 596 GPANGFDAPSK----TDYEECLACQ 616


>gi|31544247|ref|NP_852825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|5565930|gb|AAD45273.1|AF152114_1 ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           gallisepticum]
 gi|31541091|gb|AAP56393.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930286|gb|ADC30225.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(high)]
          Length = 722

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 178/749 (23%), Positives = 303/749 (40%), Gaps = 93/749 (12%)

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-E 294
           +Y +       +      E     I+     + + E++    L  L   +K E D  F  
Sbjct: 36  LYMQVHVKPRTKKFNSIHERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPS 94

Query: 295 YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++G    Y+ Y L  N  +   E      +  A+ L  K  +  K  +     + S  F 
Sbjct: 95  FMGAFKFYNSYCLKSNDGKEFYETYSERCLMNALFLGGKNFQNVKNILIE---ILSGRFQ 151

Query: 353 CSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N+G  +  +  SC+L  V D++  I  A+  +  L+K  GG+    T +R  G
Sbjct: 152 PATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFG 211

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A I    G++ GVIP +K+  D+    NQ G+R G   AYL   H DV  FLD ++   D
Sbjct: 212 APIKNIEGQASGVIPVMKILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENAD 271

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           ++ R   +     +PD+  +    N    LFSP +V   +     + ++  E Y    + 
Sbjct: 272 EKIRIKSLALGLVVPDITFELAKNNEQMALFSPYDVQREYGKPFSDIKVT-EEYHNMVNN 330

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                   ISA   ++ +  + FE+G+P++ F D     +   + G +  SNLC+EI  +
Sbjct: 331 PR-IKKTYISARKFFQTIAELHFESGYPYLLFDDTV--NNRNPNAGRIVMSNLCSEIVQS 387

Query: 592 SSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DI 638
           S+S E               CNLGS+N+     +     ++   ++  A++ LD+V    
Sbjct: 388 STSTEYNEDFSIKKLGQDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSA 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N       K  N  + A+GLG M     L    I Y SPEA+E  D     ++++A  AS
Sbjct: 444 NLDCAPSVKNGNANNHALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKAS 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMNRTSRLPW 746
             LA E+   Y++FK S +  G +                  + E+     +   ++  W
Sbjct: 504 NRLAVEQKQTYANFKTSKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADW 563

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L + +K  G+ N++ +AIAPT +I+ +   + SI P    + V+           ++ 
Sbjct: 564 QALTEEIKKTGLANAHLLAIAPTGSISYLSSCTPSIQPVVAPVEVRKEGKIGRVYSLAYK 623

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +NE                                K     A+E+ P   I+  ++ QK 
Sbjct: 624 LNEHNY-----------------------------KYYKDGAYELGPNPYIDICAQAQKH 654

Query: 867 IDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ D  + + L+  Y +A+     + YY+R R     +   L     + + 
Sbjct: 655 VDQAISLTLFMNDTATTRDLNKAYIRAYKSKCASVYYVRVRQNVLEDSENLDWAKDQAST 714

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V                      +CE CQ
Sbjct: 715 V----------------------DCEACQ 721


>gi|158079505|ref|YP_001504318.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890349|dbj|BAF81477.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 716

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/717 (23%), Positives = 292/717 (40%), Gaps = 85/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +   + +           L  E     I EG   + +       + +       Y +
Sbjct: 25  KEAVRAFFLEHVNKNTVFFYSL-EEKISYLIREGYIDKTVITDKYSMEFIKKLFKFIYSK 83

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++G    Y +Y +  +     +E  +    RVA          E+ A++  + L
Sbjct: 84  KFRFDTFMGAYRFYKQYAMKTDDGERYLERYED---RVAFNALTMGDGDEELAMKIADEL 140

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TPT  N+G  R  +  SCFL  V D +  I   L     L+K  GG+G + +
Sbjct: 141 INRRYQPATPTFLNAGRLRRGEYVSCFLIQVEDSMSSIGRTLNSALQLSKLGGGVGINLS 200

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LG  I G  G   GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL  
Sbjct: 201 NLRALGDPIKGIEGAGSGVVPVMKMLEDGFRYANQLGQRQGAGAVYLNVFHADIMDFLST 260

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK   +  ++   ++    +PD F +         LFSP +V+  + +     +I  E Y
Sbjct: 261 RKENAESAKQIKTLSLGVVVPDKFYELAESGDVIHLFSPYDVAKEYGVPFSFVDIDSE-Y 319

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   I+  + ++A  L  ++  +  E+G+P+I      N  +     G +  SNLC
Sbjct: 320 NNMIQNPNIR-SKVMNARDLEEEISRLQQESGYPYIMNVSTVNKAN--PIDGKIIMSNLC 376

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +  +               CNLGSIN+L          + + ++I T VR L 
Sbjct: 377 SEILQVQTPSKLNDEQVYEELGADISCNLGSINILNLLET----SNDVVASIETMVRALT 432

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D+ N   +   K  N     IGLG MG  +      + Y SPE++E+ D   E I++
Sbjct: 433 YITDVSNIKAVPTIKNGNDKAHTIGLGAMGLHAWFASNQVEYGSPESIEMTDALFELINY 492

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSR 743
             + AS ++A+ER   + +F+ S +  G +  + +          +AEV D + +   + 
Sbjct: 493 ATLVASNKIAKERDTTFYNFENSKYADGSYFDEYVPTLSQEISSKVAEVFDGVVL--PNV 550

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W+ L+  +   G+ + N +A+AP  +IA +   + S+ P    +  + +     T   
Sbjct: 551 KDWETLRNSIIESGLYHQNRLAVAPNGSIAYVNETTSSLHPIISMIEERQDGKTGKTYYP 610

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           +                               R+ +     + +A++   + +I   +  
Sbjct: 611 A------------------------------PRLSEKTIPYYKSAYDTSMIDVINVYATA 640

Query: 864 QKWIDQAQSLNLYLDE---------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           QK IDQ  SL L++                  S + L  +   AW  G+KT YY+R+
Sbjct: 641 QKHIDQGMSLTLFMRSELPENLYPWKVEGGATSTRDLTLLRHYAWKKGIKTIYYVRT 697


>gi|238650261|ref|YP_002916113.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
 gi|238624359|gb|ACR47065.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
          Length = 607

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 211/690 (30%), Positives = 310/690 (44%), Gaps = 97/690 (14%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           F        +    +      G  IL DRY +       E  Q  F RV+   A    E 
Sbjct: 4   FKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----EN 54

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA 
Sbjct: 55  KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAA 114

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   
Sbjct: 115 RGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIN 173

Query: 456 HIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP          
Sbjct: 174 HPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPATKK------ 227

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RS 571
                                V  K+ A  LW K+LT   ETG P++ F D  N      
Sbjct: 228 ---------------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEH 266

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++    V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S + 
Sbjct: 267 HKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIML 325

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     + 
Sbjct: 326 FLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKI 385

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E+IS     AS+E+ +E+GA                             A++  S    
Sbjct: 386 FEYISAETDKASIEIGKEKGACPD--------------------------ALDAGSNE-- 417

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                       R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  
Sbjct: 418 ------------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKH 465

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  
Sbjct: 466 LEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTP 525

Query: 866 WIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   + 
Sbjct: 526 YITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADK-----VSHDVL 580

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                D       L       +  EC  CQ
Sbjct: 581 KADFKDLEEQNDKLAEAG---NYEECLACQ 607


>gi|19746347|ref|NP_607483.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19748542|gb|AAL97982.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes MGAS8232]
          Length = 719

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/712 (23%), Positives = 290/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  +H+   +F +  LA+ +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIHKYHPEF-ITELASVIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLVNDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN------RTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L  +            W 
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWK 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|119383702|ref|YP_914758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
 gi|119373469|gb|ABL69062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
          Length = 754

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/658 (25%), Positives = 270/658 (41%), Gaps = 86/658 (13%)

Query: 299 QILYDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L  +G +      +  + RVA  LA  E +       FY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKDSGGQPADLSVEDSWRRVARDLARVEKDPALWEDRFYAALEDFKFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ILAGAGTGREVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ ++    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQ----DSA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                                 
Sbjct: 187 RLRMFNLSVLVTDAFMEAVKADGPWDLQFG-----------------------------G 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW +++   ++   P + F D  N ++   +   V ++N C E  L    
Sbjct: 218 KVYHTVRARDLWNRIMRATYDYAEPGVIFIDRINQQNNLNYAETVAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL         A+ + + + L   +RTAVR++DNV+D +   + +    
Sbjct: 276 --YGACLLGSVNLARLVEAPFTAHARLNPEALDELVRTAVRMMDNVVDASKFPLPQQSAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y + +AVE     M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALLMLGLRYGAADAVEQTRVWMKAIARSAYLASVDLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA     R+  D L++ V   G+RN+   +IAPT
Sbjct: 394 LFDAKKY-------------------LASGFMRRMDAD-LREAVARHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  DLK   
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLK--- 483

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                   +PD        A  + P+  +   +  Q+W+D + S  +   E  S +    
Sbjct: 484 ----GDAPLPD----YFVNAQTLAPLDHVAMQAAAQEWVDSSISKTINCPEDISFEDFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           +Y  AW  G K     R    T    S  +  +    A    D    T  L  P++  
Sbjct: 536 VYLAAWDKGCKGCTTYRPNEVTGSVLSVSEKTEEAPQADKGADVVYLTEPLDRPAALE 593


>gi|68171691|ref|ZP_00545050.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658153|ref|YP_507276.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998883|gb|EAM85576.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599610|gb|ABD45079.1| ribonucleoside-diphosphate reductase, alpha subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 595

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/680 (30%), Positives = 310/680 (45%), Gaps = 102/680 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            YERD      G  +L DRY L       E  Q  F+R++       ++  + A   Y+ 
Sbjct: 7   DYERDNNLTAFGKAVLSDRYLLEN-----EDYQQLFVRISEYY----SDNPEHAQRLYDY 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 58  MSQLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYWG 117

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLDL
Sbjct: 118 NLRSIGEKVR-GSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLDL 176

Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           RK TG D  R+  +++    + + FMK V  +  W L SP + S L              
Sbjct: 177 RKPTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQSVLF------------- 223

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHS 581
                          I A  +W K+LT   ETG P+I F D  +   P+ +  +   +  
Sbjct: 224 --------------TIKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIKM 269

Query: 582 SNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           SNLCTEITL +  +      TA+C L S+NL  ++   + +   +   +R    VL + I
Sbjct: 270 SNLCTEITLTTGYDHLNKSRTAICCLASLNL-EYYEQWKDNSLFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIRKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G+                                         L  +   I
Sbjct: 389 ASYNIAMEKGSC----------------------------------------LDAQDAGI 408

Query: 757 GMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R  N ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   LK +  
Sbjct: 409 VERFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGK 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            +E + S +  ++GS+ +++ + ++ K I  TA+E+D  W+IE  S R K+I QAQS+N+
Sbjct: 469 DNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNI 528

Query: 876 YLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L     K+ L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADKVSHGALEKSIEQYKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYNECLSCQ 595


>gi|144227518|gb|AAZ44306.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae J]
          Length = 720

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 310/775 (40%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 14  QEKSYLSLNANSKIFANHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 73

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 74  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 133 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 192

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 193 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 253 QGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 312

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+ + Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 313 YDVEKVYQKAFSDISISEKYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 370

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+              +   CNLGS+N+     
Sbjct: 371 DIVNKENAHP--DRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAME 428

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 429 SG----PDFEEMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 484

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 485 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 544

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 545 TFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTP 604

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 605 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 635

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 636 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 695

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 696 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 719


>gi|306827105|ref|ZP_07460400.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304430700|gb|EFM33714.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 719

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/712 (23%), Positives = 289/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA+ +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELASIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSNIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|323227179|gb|EGA11353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
          Length = 674

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/716 (25%), Positives = 293/716 (40%), Gaps = 85/716 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVTFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V    +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 238

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   
Sbjct: 239 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMA 298

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +V   +     +  I+    E  AD    K +  I+A   ++ +  + FE+G+P+
Sbjct: 299 LFSPYDVQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTLAEIQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +     G ++ SNLC+EI               +       CNLGS+N+ 
Sbjct: 357 IMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  D   +  T+ TA+R L  V D++   ++      N    AIGLG M     L
Sbjct: 415 -----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VF 721
               I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G       
Sbjct: 470 AREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 529

Query: 722 PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   
Sbjct: 530 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 589

Query: 779 SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ NE                            
Sbjct: 590 TSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892
                 ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     A
Sbjct: 622 ---NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 674


>gi|307295358|ref|ZP_07575197.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306878861|gb|EFN10080.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 645

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 207/683 (30%), Positives = 302/683 (44%), Gaps = 107/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F      +A    +    A   Y+ 
Sbjct: 56  DDSRDALLTDFGKDTLQDRYLLPG-----ESYQDLF----ARVAAAYADDADHAQRVYDY 106

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 107 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 166

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 167 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 225

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM  V     + L SP +                   
Sbjct: 226 RKTSGDFNRKALNLHHGVLLTDEFMAAVRDGKEFALRSPKD------------------- 266

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 267 --------QSVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 318

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL         ++      +   +R LDNV  
Sbjct: 319 NLCSEITLPTGRDHIGNDRTAVCCLSSLNL-----ETWDEWKDDKQFVEDVMRFLDNVLQ 373

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++GLG+MGF S L    +P+    A        + IS  
Sbjct: 374 DYIDRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHISEK 433

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS++LA ERG          D GV                                 
Sbjct: 434 AAEASMQLAVERGPCPD----AADMGVME------------------------------- 458

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F + N +L   L  
Sbjct: 459 -----RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFAIKNPYLEKLLVA 513

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +     A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 514 KAKDSTAVWNSILEKGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQS 573

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S      +     D  ++A      
Sbjct: 574 LNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRAGFAGGVEADNTIDAPKFEIG 633

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
            +           T   EC  CQ
Sbjct: 634 ET-----------TDYDECLACQ 645


>gi|312973114|ref|ZP_07787287.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|310333056|gb|EFQ00270.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
          Length = 718

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/714 (24%), Positives = 296/714 (41%), Gaps = 86/714 (12%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP----------E 254
           ++  L ++  +Y  + A   +  L        + K ++A    +               +
Sbjct: 5   TAECLTQETMDYHALNA---MLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGS 312
                + EG     +       D V       +   F F  +LG    Y  Y L   +G 
Sbjct: 62  RLNWLVNEGYYDESVLNRYSR-DFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E        VA+ LA  +   E  A++  + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLEDFADRVTMVALTLAQGD---ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP +V     +YGK F ++A   +  +    E    + ++A   ++++
Sbjct: 298 HLAKENAQMALFSPYDV---ERVYGKPFADVAISQHYDELVADERIRKKYLNARDFFQRL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+ E             
Sbjct: 355 AEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYTRTGHD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D    A T+ TAVR L  V D++   ++   +  N    AI
Sbjct: 413 ISCNLGSLNIA-----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S 
Sbjct: 468 GLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSR 527

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +          + E+     +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 528 YASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVP 587

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 588 PTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------- 630

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                            ++  A+EI    +I++ +   + +DQ  SL L+   P
Sbjct: 631 --------------NLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFSPIP 670


>gi|164688727|ref|ZP_02212755.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
 gi|164602203|gb|EDQ95668.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
          Length = 698

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/705 (24%), Positives = 301/705 (42%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  +   +    +   L  +     +E    ++ + +    + +  + + ++  +
Sbjct: 25  KEALKSYLEDYIEPKMKKFDNL-NDRLNYLVENDYYSKEILDLYDQYVIDVIYDFIR-AK 82

Query: 290 DFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F+ Y+     Y  Y L  N     +E  +   + VA+ L   E    K A +    L
Sbjct: 83  NFKFQSYMSASKFYQNYALKSNDGEEILENYEDKVLIVALTLGNGEP---KLAKDIAEKL 139

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPT  N+G     ++ SCFL  V D   GI  A+     L+K  GG+  + T
Sbjct: 140 INQEFQPATPTFLNAGRARGGKMVSCFLVNVEDSCEGISYAVSSANHLSKIGGGVALNLT 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G + GV+   K+   +    NQ G R+GA   YL   H D E  LD 
Sbjct: 200 RLRASGESIKGIKGAAGGVMGVAKLLEQSFSYFNQMGARQGAGAVYLNVLHPDFETLLDS 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  +   + ++    ++  E Y
Sbjct: 260 KKINADEKIRLTTLSIGAIIPDKFMELAEKNEKCYAFYPHSIYQKYGVHLDGIKMD-EWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++ A+  EI+  ++I+   L  ++     E+G+P++ F D  N +   + VG++  SNLC
Sbjct: 319 DKLANDDEIEK-KEINPRELLTRIAQTQQESGYPYVVFIDSANEQHTLKDVGMIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  +               CNLGS+N+      N  D   +  TI  A+R L 
Sbjct: 378 CEIFQYQTPSDIKGYGQVSDWGQDISCNLGSLNIA-----NVMDNKDIEKTIDVAIRALT 432

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   KK N +  +IGLG M     L    I Y S E  E AD     + +
Sbjct: 433 YVSDNTNIEEVPTIKKGNDSSHSIGLGAMNLHGYLVREDIIYTSKEGREFADVFFAMMRY 492

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDEL-AMNRTS 742
           +AI  S+ +A E+   ++ F+ S + +G            D +    +V      +N  +
Sbjct: 493 YAIKTSMNIAIEKGETFNGFEKSEYAKGPESELFKKYCTKDFLPTSEKVSKLFEGINIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W EL ++VK  G+ N+   AIAPT +I+ +   + S+ P  + + V+    GD T +
Sbjct: 553 KEDWTELLQQVKNNGIYNAYLTAIAPTQSISYVQNSTSSVMPITEQIEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + ++    + +A+ ID + LI+  + 
Sbjct: 611 YP-----------------------------MPFLTNENMLYYQSAYRIDMLDLIDMVAI 641

Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  IDQ  S  L++ +  + + +   Y  A   GLK+ YY R++
Sbjct: 642 IQGHIDQGISTTLFVTDDKTTRDIARYYIYAHKKGLKSLYYTRTK 686


>gi|15892570|ref|NP_360284.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           conorii str. Malish 7]
 gi|15619734|gb|AAL03185.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           conorii str. Malish 7]
          Length = 607

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/690 (30%), Positives = 310/690 (44%), Gaps = 97/690 (14%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           F        +    +      G  IL DRY +       E  Q  F RV+   A    E 
Sbjct: 4   FKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----EN 54

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA 
Sbjct: 55  KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAA 114

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   
Sbjct: 115 RGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIN 173

Query: 456 HIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP          
Sbjct: 174 HPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPATKK------ 227

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RS 571
                                V  K+ A  LW K+LT   ETG P++ F D  N      
Sbjct: 228 ---------------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEH 266

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++    V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S + 
Sbjct: 267 HKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIML 325

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     + 
Sbjct: 326 FLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKI 385

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E+IS     AS+E+ +E+GA                             A++  S    
Sbjct: 386 FEYISAETDKASIEIGKEKGACPD--------------------------ALDAGSNE-- 417

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                       R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  
Sbjct: 418 ------------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKH 465

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  
Sbjct: 466 LEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTP 525

Query: 866 WIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K     +   + 
Sbjct: 526 YITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADK-----ISHDVL 580

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                D       L       +  EC  CQ
Sbjct: 581 KADFKDLEEQNDKLAETG---NYEECLACQ 607


>gi|20808702|ref|NP_623873.1| ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517341|gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 691

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 283/632 (44%), Gaps = 81/632 (12%)

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP- 377
            F RVA  +A  E E+E     FY ++S + F+     L  +GT       +CF+  V  
Sbjct: 1   MFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIPVEA 56

Query: 378 -------DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                  D    I   + +   +    GG+G +W+ +R  GA++ G  G S G + ++  
Sbjct: 57  NDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLA 116

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K    D  +    N +  + D FM
Sbjct: 117 ANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK----DLTKMQQANLSVAVSDAFM 172

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V Q+  W L  PD     +D      E   +  E +A      V+++I A  LW K++
Sbjct: 173 EAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEWKAKGYPTVVYKEIPARELWNKIV 227

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T  +E+  P + F +  N  S   ++  + S+N C E+      E   VCNLG+INL+A 
Sbjct: 228 TAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGEL----GLEPYGVCNLGAINLVAF 283

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N + ++++L  T++ AVR LDNV+D+  + + + K+     R +GLGLMG   AL L+
Sbjct: 284 VENGKINFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILM 343

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           ++ Y S E+++  +E +  I   A  ASVELA+E+G +  F    + +G F         
Sbjct: 344 NLRYGSEESLKATEEIVRRIRDAAYRASVELAKEKGPFPEFVADKYLKGQF--------- 394

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                       RLP  +++  +   G+RN+  +  APT T + + GVS  I+P++   Y
Sbjct: 395 ----------IQRLP-KDIRDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEY 443

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           V+ + +G  TV +                 ++D                       +A E
Sbjct: 444 VRKDRTGTHTVKHW----------------LADYPA------------------FVSAHE 469

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + P   ++  +  QK+ID + S  + L    +   +D IYR A+ +G K     R  S  
Sbjct: 470 VTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDIDNIYRLAYELGCKGITVYRDGSRE 529

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            V  +  K  +              T  +  P
Sbjct: 530 GVLVTDTKPQEKTKITERPPVLKGITKRIETP 561


>gi|225870272|ref|YP_002746219.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. equi 4047]
 gi|225699676|emb|CAW93382.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. equi 4047]
          Length = 719

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 290/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  +     +F + +LA  ++ E 
Sbjct: 32  KEALEAFFTENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEF-ISHLAKSIQAE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +   M  A+  A  +   E  A +    +
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYFADGD---ETLAKDLAIEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    NA   LFSP  V   + L     +I     
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARHNADMYLFSPYSVEREYGLPFNYIDITSMYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  A+        KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC
Sbjct: 327 ELVANPNI--TKTKIKARDLETEISKLQQESGYPYVINIDTANRSN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +  F       +IR   R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-----GRSIRAMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S ++A+ER   +  F+ S +  G +    I      + EL               
Sbjct: 498 WTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQAAD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L++ + T G+ + N +A+AP  +I+ I   S SI P  Q +  +             
Sbjct: 558 WKALRQAIMTDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + + IP      + +A+++D   +I+  +   K
Sbjct: 606 ------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATK 647

Query: 866 WIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|71893571|ref|YP_279017.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae J]
          Length = 713

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 310/775 (40%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 7   QEKSYLSLNANSKIFANHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 66

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 67  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 125

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 126 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 185

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 186 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 246 QGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 305

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+ + Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 306 YDVEKVYQKAFSDISISEKYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 363

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+              +   CNLGS+N+     
Sbjct: 364 DIVNKENAHP--DRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAME 421

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 422 SG----PDFEEMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 477

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 478 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 537

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 538 TFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTP 597

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 598 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 628

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 629 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 688

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 689 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 712


>gi|144575329|gb|AAZ53595.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 7448]
          Length = 720

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 308/775 (39%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 14  QEKSYLSLNANSKIFANHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 73

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 74  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 133 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 192

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 193 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 253 QGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 312

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+   Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 313 YDVEKVYQKAFSDISISENYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 370

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+                  CNLGS+N+     
Sbjct: 371 DIVNKENAHP--DRVVMSNLCSEITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAME 428

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 429 SG----PDFEEMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 484

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 485 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 544

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 545 TFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTP 604

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 605 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 635

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 636 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 695

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 696 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 719


>gi|322412097|gb|EFY03005.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 719

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/725 (23%), Positives = 296/725 (40%), Gaps = 83/725 (11%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V  + LL K  +E L   + +           +  +       + +++  + +   +F +
Sbjct: 22  VGGKILLHK-DKEALEAFFTENVLPNTMSFTSVTEKIEYLISNDYIESAFIQKYRPEF-I 79

Query: 279 VYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK 335
             LA+ +K E +F F  ++     Y +Y L  N     +E  +   M  A+  A      
Sbjct: 80  TELADVIKTE-NFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGN 135

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E  A +    + +  +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L+
Sbjct: 136 ETLAKDLAIEMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLS 195

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  
Sbjct: 196 RIGGGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNV 255

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + + 
Sbjct: 256 FHPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIP 315

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               +I     E  A+        KI A  L  ++  +  E+G+P+I   D  N  +   
Sbjct: 316 FNYLDITNMYDELVANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--P 371

Query: 575 HVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI    +                  CNLGS N+L    +  F      
Sbjct: 372 IDGKIIMSNLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-----G 426

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +I+T  R L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E
Sbjct: 427 RSIKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIE 486

Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN- 739
             D     +++  +  S  +A+ER   +  F  S +  G +    I      + +L  + 
Sbjct: 487 FTDIYFMLMNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYITGQFVPKSDLVKDL 546

Query: 740 -----RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +  
Sbjct: 547 FKNHFIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ- 605

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                                  E  I  + Y    + + + IP      + +A+++D  
Sbjct: 606 -----------------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMR 636

Query: 855 WLIESASRRQKWIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTT 900
            +I+  +   + +DQ  SL L+                + + + L  +   A+  G+K+ 
Sbjct: 637 KVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSI 696

Query: 901 YYLRS 905
           YY+R+
Sbjct: 697 YYIRT 701


>gi|157955387|gb|ABW06084.1| NrdE [Bacillus thuringiensis serovar subtoxicus]
          Length = 694

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 305/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+   GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|72080560|ref|YP_287618.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 7448]
          Length = 713

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 308/775 (39%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 7   QEKSYLSLNANSKIFANHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 66

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 67  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 125

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 126 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 185

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 186 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 246 QGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 305

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+   Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 306 YDVEKVYQKAFSDISISENYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 363

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+                  CNLGS+N+     
Sbjct: 364 DIVNKENAHP--DRVVMSNLCSEITQPSTPSRFLPDLSFKEIGKDICCNLGSLNIDKAME 421

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 422 SG----PDFEEMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 477

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 478 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 537

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 538 TFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIANSHLMAIAPTGSISYLSSCTP 597

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 598 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 628

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 629 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 688

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 689 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 712


>gi|34496901|ref|NP_901116.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
 gi|34102757|gb|AAQ59121.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
          Length = 950

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/668 (24%), Positives = 279/668 (41%), Gaps = 82/668 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           ++L ++Y  +   S  E+      RVA  LA  E +  +    F+  L    F+      
Sbjct: 17  EVLLEKYAKNGEQSVSEVRH----RVARALAELEKDPARFEPLFFEALDHG-FIPGGRIN 71

Query: 359 FNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +GT     L +CF+  V D +        GI+ AL + A   +  GG+G +++ +R  
Sbjct: 72  SAAGTDLRATLINCFVQPVGDSVSETEHGKVGIYQALLQAAETMRRGGGVGYNFSRIRPR 131

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + GTN ++ G + +++V + +   V   G R+GA    L+  H DVE+F+  +    
Sbjct: 132 GARVKGTNSRASGPVSYMRVFDRSCETVESAGARRGAQMGVLDVSHPDVEDFIHAK---- 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+    + N +  + D FM+ V  +A W L     V  + D +   F  A         
Sbjct: 188 -DQGDLRNFNISVGVSDDFMRAVEADADWQL--THAVEPMSDAFPDSFRRA--------- 235

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              + V+R + A  LWR+++   ++   P + F    N  +   +  V+ S+N C E  L
Sbjct: 236 -DGLWVYRTVRARDLWRQIMESTYDHAEPGVLFMTRINQDNNLSYCEVIESTNPCGEQPL 294

Query: 591 NSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                +   C+LGS+NL  H          FD+      +R +VR+LDNV+D+    + +
Sbjct: 295 P----DYGCCDLGSVNLTRHVRAPFGDKAHFDFKSFEKVVRMSVRMLDNVLDLTVWPLPE 350

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R +GLG  G   AL +L I Y S E    A    E +   A  ASV+LA E+
Sbjct: 351 QQREAMNKRRVGLGFTGLGDALIMLKIRYDSEEGRRFAARISESMRDAAYDASVDLAIEK 410

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F    +                    A +  SRLP  +++ R++  G+RNS+ ++
Sbjct: 411 GAFPLFDAEKY------------------LAAPHCASRLP-AKIQARIRKHGIRNSHLLS 451

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+       S  I+P +   Y +     D +    +LV +   R +W       
Sbjct: 452 IAPTGTISLAFADNASNGIEPPFSWFYTRKKRMADNSQ-QEYLVEDHAYR-VWRMQ---- 505

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-G 882
                   G+  ++PD       +A E+  +  +   +    ++D A S  + +      
Sbjct: 506 -------GGDTAKLPD----YFVSALEMSALDHMRMVAAVAPYVDTAISKTVNVPADYPF 554

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS----RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           +  + +Y +AW  GLK     R      S  SVE +        L+          T + 
Sbjct: 555 EDFESLYLEAWRNGLKGITTYRPNNVLGSVLSVEPAQRAAAPEDLSGAASDPDRRVTLNT 614

Query: 939 GIPSSCTS 946
               + +S
Sbjct: 615 APTPALSS 622


>gi|16082440|ref|NP_394926.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           acidophilum DSM 1728]
 gi|10640815|emb|CAC12593.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 770

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/875 (23%), Positives = 349/875 (39%), Gaps = 185/875 (21%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYDGL--SESDLET 200
           +++  DGT++ F   ++ M + +A           ++ +  +    + D    S  +++ 
Sbjct: 6   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQD 65

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            +                     +  K+  +  T V K            LY E   R I
Sbjct: 66  VVEDV-----------------LMTSKIDGKTFTDVAK---------SYILYREK-RRAI 98

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP-- 317
            E  +   + +                  D       +++L  RY L   +G  IE P  
Sbjct: 99  REEKELMGVKD------------------DLKLTLNAVKVLEARYLLKDEDGKIIETPRQ 140

Query: 318 ----------------------------------------QAFFMRVAMGLALKETEKEK 337
                                                   Q   +R A G   ++   E 
Sbjct: 141 MFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIGKVSPTQEEVLRRAFGYMKEDGIIEG 200

Query: 338 RAVEFYNL------------------LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
              EF +                   +SS  F+ ++PTL N+GT+  QLS+CF+  V D 
Sbjct: 201 TFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDS 260

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  IF  L+  A++ K  GG G  ++ +R     +  T G + G + F+K+ + T   + 
Sbjct: 261 IEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKGVASGPVSFMKIFDVTTDVIK 320

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKR+GA    L   H D+ EF+  + +   + +   + N +  + D F  ++  +   
Sbjct: 321 QGGKRRGANMGILNYNHPDIMEFILSKDS---ENKVLSNFNISVGVTDDFFDKLDND--- 374

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                                   +Y    +    K+ ++I A  +W  ++   ++T  P
Sbjct: 375 ------------------------DYVDLVNPRTKKIMKRIKAREIWDAIIDQAWKTADP 410

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
            + F D  N ++P ++VG + S+N C E  L         CNLGSINL  +  + +  D+
Sbjct: 411 GLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPYES----CNLGSINLSKYVVDGKKIDF 466

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D+L  T+ TA R LD+VID N   +E+ KK     R IGLG+MGF   L  L IPY S E
Sbjct: 467 DRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMTRKIGLGVMGFADMLIKLEIPYNSWE 526

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+EI ++ M FI+  +  AS  LA+ERG + ++ GS W+                     
Sbjct: 527 ALEIGEKVMSFINDESHKASQALAEERGVFPAWYGSEWE--------------------- 565

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797
                      K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G 
Sbjct: 566 -----------KEGIK---MRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQ 611

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +   VN     + ++  ++ E ++  +    G++ N+ +I +++KKI  TA EIDP W +
Sbjct: 612 ELLEVNPLFEEKTRELGIYSEELMRQV-AETGNLENV-KINEEVKKIFVTAHEIDPQWHV 669

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q++ D   S  + +  + + + +   YR A  +  K     R +S T    +  
Sbjct: 670 LMQATFQRYCDSGVSKTINMRSDATREDIARAYRMAKDLHCKGITVYRDKSKTVQVLTAG 729

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
                K     V +  +      +    T D  C 
Sbjct: 730 TAETKKPEEKEVIELVTKMPDKYLKIDSTFDPACP 764



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 32/159 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+      +       + L ++ V RL    K 
Sbjct: 6   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDA-------EQLADKVVARL----KD 54

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E+IQD VE  LM S         + + Y+LYRE+R  +R  +            
Sbjct: 55  KERPSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMG-------- 106

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
               + D   ++ N+ +    V EA   L+D   KI+ +
Sbjct: 107 ----VKDDLKLTLNAVK----VLEARYLLKDEDGKIIET 137


>gi|269123321|ref|YP_003305898.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
 gi|268314647|gb|ACZ01021.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
          Length = 694

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/708 (24%), Positives = 301/708 (42%), Gaps = 69/708 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     IE+          M  F+ +       Y +
Sbjct: 25  KEAVYSYFIDYINKNTVFFHNL-KEKIDYLIEKDYYINFYD--MYSFEEINEVFKFVYSK 81

Query: 290 DFAF-EYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  Y+     Y  Y L  +     +E  +     VA+ L     EK   A+++  +L
Sbjct: 82  KFRFKSYMAASKFYQSYALMDDTGEKILERYEDRISIVALYLGQGNKEK---ALKYAKML 138

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TPT  N+G +   +L SCFL  + D+L GI  A +    L+   GG+  + +
Sbjct: 139 INQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLSGIGYAFESAMKLSSIGGGVAFNIS 198

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H D+ EFLD 
Sbjct: 199 KLRARGEAIKGVEGRASGVLPIMKILEDIFSYANQLGQRPGAGAVYLNVFHSDILEFLDT 258

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    I D FM+  + +     F P  V   +  Y  + ++  E Y
Sbjct: 259 KKINVDEKIRIKSLSIGVIISDKFMELASADLPCYTFYPHSVYLEYGKYLDDLDM-NEWY 317

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E+     ++   +KI+      K+     E+G+P++ FKD  N     + +G V  +NLC
Sbjct: 318 EKLVANPKV-KKKKINVREFLVKVAQTQKESGYPYLFFKDNANREHALKEIGDVKFTNLC 376

Query: 586 TEITL-------NSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           TEI         N+  EE  +     CNLGS+N+     N       +   ++ A+  L 
Sbjct: 377 TEIMQLTEVSDINNYYEEDNIRRGISCNLGSVNIAKVMENKS-----IKEVVKNAIDSLT 431

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   KK+N    ++GLG M     L    I Y S EA++  +     +++
Sbjct: 432 TVSDLTNISIVPSIKKANDELSSVGLGAMNLHGYLAKNMIQYESREALDFCNVFFMMMNY 491

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLP 745
           +++  S+E+A+ER  ++  F+ S +  G +    I      +   V++    ++      
Sbjct: 492 YSLERSMEIAKERSRSFLGFEKSEYANGKYFEKYITKEYMPVTDRVKELFEGIHIPGVEE 551

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +LK+ V   G+ N+  MAIAP  + + I   + S+ P    + V+    GD T     
Sbjct: 552 WKKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNATASVMPIVDKVEVRE--YGDSTTFYP- 608

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                       +  +  D    + +A+++D   +++  S  Q+
Sbjct: 609 ----------------------------MPYLNYDNFFYYKSAYDMDQKNILKLISVIQR 640

Query: 866 WIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +DQ  S  L+     + + L  +Y  A  +GLK+ YY R+R +T  E
Sbjct: 641 HVDQGISTILFTKSNDTTRDLSKLYILAHKLGLKSLYYTRTRKSTIEE 688


>gi|300173990|ref|YP_003773156.1| ribonucleoside-diphosphate reductase subunit alpha [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888369|emb|CBL92337.1| ribonucleoside-diphosphate reductase, alpha subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 723

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/713 (23%), Positives = 299/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L   +   +    ++   + +  + F +  L   L+  + 
Sbjct: 35  EALDAFLKENVWPNVIQFDSLADRFEWLFENNFLERAFIEKYRLAF-IEKLYTYLE-SQH 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y++Y L  N  + +  + +  RVAM        +E+ A+   + +   
Sbjct: 93  FNFKSFMAAFKFYNQYALKTNDGQ-QYVETYVDRVAMNALYYADGREELALRLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTVNSALQLSKMGGGVGINVSNVR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + G +  + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPVMGISNSAGGIVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    IPD F   V +N    LFSP +V  ++       +I  E Y+  
Sbjct: 272 NADEKIRVKTLSLGLTIPDKFYDLVRKNDVMYLFSPVDVEKVYGKPFNYIDITSE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +  +I  +  + A  L  ++  +  E+G+P++   D  N  +     G + SSNLC+EI
Sbjct: 331 VNNDKITKYH-VDARFLEEEISKLQQESGYPYVINIDVANRAN--PIAGKIISSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +  E               CNLGSIN++   A N F       ++ T VR L  V 
Sbjct: 388 LQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATNNF-----GESVDTMVRALTYVS 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N    AIGLG MG  +      + Y   E+++        +++++I
Sbjct: 443 DTSNLDVVPSIAKGNTEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTTTFFMTLNYYSI 502

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDE 748
            AS+ +A+E    +  F+ S +  G +    +      R +         N  ++  W E
Sbjct: 503 KASMAIAKERNDTFFEFEKSTYADGSYFDKYLEEDWAPRTQKVAASFAQHNVPTKHDWAE 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK  V   GM N+   AIAPT +I+ +   + ++ P    +  +                
Sbjct: 563 LKADVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E MI  + Y    + N      +    + +A++ID   +I+  +  Q+ ID
Sbjct: 608 ---------EGMIGKVYYPAPGLNN------ETMPYYVSAYDIDMRKVIDIYAAAQEHID 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 QGMALTLFMRSTLSSDLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|241895722|ref|ZP_04783018.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871089|gb|EER74840.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 736

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/713 (22%), Positives = 297/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  K    +   +   +      + V  +++++  M F +  L   L+  ++
Sbjct: 48  EALQAFIQENVKPNTKQFNSVQDRFDYLIANDYVDQKMVNKYTMTF-IEKLYAYLE-SQN 105

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N     + + +  R+ M +       E  A+   + +   
Sbjct: 106 FQFKSFMAAYKFYAQYALKTNDGDYYI-ENYNDRIVMNVLFYANGDETLAMNLADEMIHQ 164

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCF+  V DD+  I   +     L+K  GG+G   + +R
Sbjct: 165 RYQPATPSFLNAGRSRRGELVSCFILQVTDDMNAIGRVINSALQLSKIGGGVGIVLSNLR 224

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G    + GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K 
Sbjct: 225 EAGAPIKGIANAASGVVPVMKLLEDSFSYSNQMGQRNGAGVVYLSVFHPDIMSFLATKKE 284

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + +  N+   LFSP +V  ++       +I  E Y+  
Sbjct: 285 NADEKIRVKTLSLGLTVPDKFYELLKNNSDMFLFSPYDVERVYGKPFNYVDITAE-YDAM 343

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +I+  +KI A  L  ++  +  E+G+P+I   D  N  +     G + SSNLC+EI
Sbjct: 344 VANKQIRK-KKIRARELETEISKLQQESGYPYIINIDTVNAAN--PIAGKIISSNLCSEI 400

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N++   A   F       ++   VR L  V 
Sbjct: 401 LQVQRASQINNEQTYDELGTDVSCNLGSTNIVNMMATKNF-----GKSVDAMVRALTFVS 455

Query: 637 DINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D      +   +  N    AIGLG MG  +     H+ Y   EA++  +     ++++++
Sbjct: 456 DQTDLDIVPSVRLGNRQTHAIGLGAMGLHAFFAKNHMYYGDEEALDFTNAYFLMLNYYSL 515

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDE 748
            AS  +A+ER  ++  F+ S +  G +    I      + +         +  ++  W  
Sbjct: 516 VASNNIAKERQSSFYEFEKSTYASGAYFDKYINEDWSPKTDKVKEIFSVHHFPTKEDWVA 575

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L + VK  G+ N+  MAIAPT +I+ +   + S+ P    +  +                
Sbjct: 576 LAESVKQYGLYNAYRMAIAPTGSISYVNDATASLHPIINRVEERQ--------------- 620

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    +G       D    + +A+ +D   +I+  +  Q+ ID
Sbjct: 621 ---------EKKIGKIYYPAPYLGT------DTLPYYESAYNMDMRRVIDVYAAAQQHID 665

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 666 QGMALTLFMRSTIPAGLYDWKDGHTEKMTTRDLNILRLYAYQKGIKSIYYIRT 718


>gi|157955408|gb|ABW06100.1| NrdE [Bacillus cereus]
          Length = 694

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 305/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+   GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|229586744|ref|YP_002845245.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           africae ESF-5]
 gi|228021794|gb|ACP53502.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           africae ESF-5]
          Length = 607

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 211/690 (30%), Positives = 310/690 (44%), Gaps = 97/690 (14%)

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
           F        +    +      G  IL DRY +       E  Q  F RV+   A    E 
Sbjct: 4   FKKNKFQITINNNHNNLLTPFGKAILRDRYLMQG-----EDFQDLFARVSSYYA----EN 54

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA 
Sbjct: 55  KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAA 114

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   
Sbjct: 115 RGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIN 173

Query: 456 HIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP          
Sbjct: 174 HPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPATKK------ 227

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RS 571
                                V  K+ A  LW K+LT   ETG P++ F D  N      
Sbjct: 228 ---------------------VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEH 266

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++    V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S + 
Sbjct: 267 HKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIML 325

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     + 
Sbjct: 326 FLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKI 385

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E+IS     AS+E+ +E+GA                             A++  S    
Sbjct: 386 FEYISAETDKASIEIGKEKGACPD--------------------------ALDAGSNE-- 417

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                       R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  
Sbjct: 418 ------------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKH 465

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  
Sbjct: 466 LEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRIP 525

Query: 866 WIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   + 
Sbjct: 526 YITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADK-----VSHDVL 580

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                D       L       +  EC  CQ
Sbjct: 581 KADFKDLEEQNDKLAEAG---NYEECLACQ 607


>gi|312601196|gb|ADQ90451.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 168]
          Length = 720

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 310/775 (40%), Gaps = 101/775 (13%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP------EYFCRYIEEGVK 265
           +E +Y  + A   +     +         +K  + E+   +       E     ++    
Sbjct: 14  QEKSYLSLNANSKIFANHPDSHKFDLLAAEKYINEEINPKFKFFNSFKERIEFLVQNNYY 73

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       +L  L         F   ++G    Y  Y L  N + +   + F  RV 
Sbjct: 74  DPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDNLV-YFEHFPDRVL 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIF 384
           +          ++A +    +    F  +TPT  N+G     +  SC+L  V D++  I 
Sbjct: 133 LNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSCYLIRVEDNMESIS 192

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R
Sbjct: 193 RAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKILEDSFSYANQLGQR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IP++  +    N    LFS 
Sbjct: 253 QGAGAVYLNAHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFELAKNNEKMALFSV 312

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +V  ++     +  I+ + Y+  A+    K F  ISA  L++ +  + FE+G+P+I F+
Sbjct: 313 YDVEKVYQKAFSDISISEKYYQMLANPEIKKTF--ISARKLFKIIAELHFESGYPYILFE 370

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFA 612
           D  N  +       V  SNLC+EIT  S+              +   CNLGS+N+     
Sbjct: 371 DIVNKENAHP--DRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKDICCNLGSLNIDKAME 428

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +           +  +V  LD V   +  ++    +K N+ + AIGLG M     L    
Sbjct: 429 SG----PDFEQMVYYSVLALDVVSRNSDLSVAPSIQKGNNLNHAIGLGAMNLHGFLAKNE 484

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG---- 727
           I Y S EA++  +     ++F A  AS +LA++ G +S F+ + +  G +          
Sbjct: 485 IFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFASGEYFDKYTKVSPN 544

Query: 728 -------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   + E+  +  +   ++  W  L +++K  G+ NS+ MAIAPT +I+ +   + 
Sbjct: 545 TFLPKTHKIKELFAKYQVEIPTQEDWIHLIEKIKKTGIANSHLMAIAPTGSISYLSSCTP 604

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    + ++         V S+ ++                             P  
Sbjct: 605 SLQPVVAPVEIRKEGKLGRIYVPSYKLS-----------------------------PKT 635

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
            K     A+E+ P+ +I   S  QK +DQA S+ L++ D+ + + L+  Y  A+    K+
Sbjct: 636 YKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRDLNRAYIYAFKKNCKS 695

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            YY+R R      +  L+  +                         +   C+ CQ
Sbjct: 696 IYYVRIR------QDVLEDSE-------------------------NYETCQSCQ 719


>gi|328958550|ref|YP_004375936.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328674874|gb|AEB30920.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 732

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/673 (23%), Positives = 278/673 (41%), Gaps = 78/673 (11%)

Query: 271 ESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
               DF  +       Y  +F F  ++G    Y +Y L  N     + + F  R+A    
Sbjct: 82  SDQYDFAFIKKIFKQIYAANFKFKSFMGAYKFYSQYALKTNDHSKYL-EQFEDRIAFNAL 140

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQ 388
                    A++    L S  +  +TPT  N+G +   ++ SCFL  + D +  I   + 
Sbjct: 141 YLGNGDRTLAIQLAEELISQRYQPATPTFLNAGKKKRGEMISCFLIDIADSMLSIGRGVN 200

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L++  GG+G + + +R  G  I      S GV+P +K+  D     NQ G+R GA 
Sbjct: 201 SALQLSRIGGGVGVNLSNIRSAGDPIKDIANASSGVLPVMKLLEDAFSYSNQLGQRNGAG 260

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H D+  FL  +K   D++ R   ++    +PD + + +  N    LFSP  V 
Sbjct: 261 VVYLNVFHPDILGFLSTKKENADEKIRVKTLSLGLVVPDKYYELIKTNKPMYLFSPYSVE 320

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +     +++ E Y+   +        +I+A  L +++  +  E+G+P+I   D   
Sbjct: 321 KEYGIPFSYIDLSAE-YDNMVEN-LNIKKTQINARELEQEISRLQQESGYPYILNIDTA- 377

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQF 616
             +     G +  SNLC+EI                       CNLGS N++    +  F
Sbjct: 378 -NNTNPVDGKIIMSNLCSEILQPQEPSTLNADLSYEQTGTDISCNLGSSNIMNMLQSPNF 436

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
                A ++  AVR L  V D  N   +    K N  +  IGLG MG  +AL L  I Y 
Sbjct: 437 -----AKSVNLAVRALTTVTDSSNVLEVPTISKGNSMYHTIGLGAMGLHTALALHQIEYG 491

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S E++E  +     +++H++ AS E+AQER   +  F+ S +  G +    +     + +
Sbjct: 492 SKESIEFTEAYFLALNYHSLIASNEIAQERGETFFGFEKSKYADGSYFNPYLESEFTLVN 551

Query: 735 ELAMNR------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E   N        +   W +LK++V   G+ + N +A+AP  +I+ +   S S+ P  Q 
Sbjct: 552 EKVKNIFVNIQLPTVADWKDLKEKVFQHGLYHRNRLAVAPNGSISYVNETSASLHPITQL 611

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  +                         E  +  + Y    + N      +    + +A
Sbjct: 612 IENRQ------------------------EKKVGSIFYPAPFLSN------ETLPYYKSA 641

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SGKKLDFIYRQA 892
           ++ D   +I+  +  QK IDQ  SL L++                   + + L+ +   A
Sbjct: 642 YDYDQRKIIDIYAAAQKHIDQGMSLTLFMRSTLPENIYEWKTGVSSKLTTRDLNRLRNYA 701

Query: 893 WLMGLKTTYYLRS 905
           W  G+K+ YY+R+
Sbjct: 702 WTKGIKSLYYIRT 714


>gi|157955400|gb|ABW06094.1| NrdE [Bacillus thuringiensis serovar toumanoffi]
          Length = 694

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+   GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955339|gb|ABW06048.1| NrdE [Bacillus thuringiensis serovar thuringiensis]
          Length = 694

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I + S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAHESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++I+   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|50914443|ref|YP_060415.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50903517|gb|AAT87232.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 719

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 288/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDTQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|225631267|ref|ZP_03787950.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591041|gb|EEH12240.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 584

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 199/674 (29%), Positives = 313/674 (46%), Gaps = 103/674 (15%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F   G  +L DRY +       E  Q  F R+A       ++ ++ A   Y+ +S+  F
Sbjct: 3   RFTDFGKAVLSDRYLIEN-----ESYQDLFARIANYY----SDNKEHAQRLYDYMSNLWF 53

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R +G
Sbjct: 54  MPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIG 113

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG- 470
             +   +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLDLRK TG 
Sbjct: 114 ESVK-GSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGG 172

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D  R+  +++ A  + D FM+ V  +  W L SP                          
Sbjct: 173 DPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPH------------------------- 207

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTE 587
               KV   + A  +W K+LT   ETG P+I F D  N     S ++    +  SNLC+E
Sbjct: 208 --NNKVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSE 265

Query: 588 ITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           ITL +  +      TAVC L S+NL  ++   + +   +   +R    VL++ I+   + 
Sbjct: 266 ITLTTGYDHLNKSRTAVCCLSSVNL-EYYEEWEDNKLFIEDIMRFLDNVLEDFINKAPNE 324

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++   A   S +LA
Sbjct: 325 MQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLA 384

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA                      A+  D +                      R ++
Sbjct: 385 EEKGACPD-------------------AKEVDLME---------------------RFTH 404

Query: 763 CMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            +AIAPTA+I+ I G +   I+P   N++++  ++G F V N FL   L +++  ++ + 
Sbjct: 405 KLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIW 464

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+NL+L    
Sbjct: 465 SSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASNRTSYICQSQSVNLFLPANV 524

Query: 882 GKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
            K+ L  I+  AW  GLK+ YY RS+S    +K +             TD          
Sbjct: 525 HKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD---------- 574

Query: 941 PSSCTSDTECEVCQ 954
                   EC  CQ
Sbjct: 575 ----IDYDECLSCQ 584


>gi|94994622|ref|YP_602720.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94548130|gb|ABF38176.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 719

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 289/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA+ +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELASIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKTN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|12045086|ref|NP_072897.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|255660232|ref|ZP_05405641.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|1350599|sp|P47473|RIR1_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3844834|gb|AAC71452.1| ribonucleoside-diphosphate reductase, alpha chain [Mycoplasma
           genitalium G37]
 gi|166078758|gb|ABY79376.1| ribonucleoside-diphosphate reductase, alpha chain [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 721

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/704 (24%), Positives = 297/704 (42%), Gaps = 70/704 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E     + KP+    H  +    E     I+       +  +M  F+         Y   
Sbjct: 40  ESYIQEHVKPKTKVFHSTK----ERLDFLIKNDYYDEKI-INMYSFEQFEEITHKAYSYR 94

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F +  ++G    Y+ Y L     +  + + +  RV M + +       +A++    +   
Sbjct: 95  FRYANFMGAFKFYNAYALKTFDGKYYL-ENYEDRVVMNVLMLANGNFNKALKLLKQIILN 153

Query: 350 HFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G  +  +  SC+L  + D++  I  A+     L+K  GG+    + +R
Sbjct: 154 RFQPATPTFLNAGRKKRGEFVSCYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLSNLR 213

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H DV +FLD ++ 
Sbjct: 214 EAGAPIKKIENQSSGIIPIMKLLEDSFSYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRE 273

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    IPD+  +    N    LFSP ++   +     +  +    YE  
Sbjct: 274 NADEKIRIKSLSLGLVIPDITFQLAKNNEMMALFSPYDIYQEYGKALSDISVTEMYYELL 333

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            ++   K F  ISA   ++ +  + FE+G+P+I F D  N R+  ++   +  SNLC+EI
Sbjct: 334 ENQRIKKTF--ISARKFFQTIAELHFESGYPYILFDDTVNRRNAHKN--RIVMSNLCSEI 389

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
              S   E               CNLGS+N+     +      +LA  I+ A+  LD V 
Sbjct: 390 VQPSLPSEFYSDLTFKKVGSDISCNLGSLNIARAMESGS----ELAELIQLAIESLDLVS 445

Query: 637 -DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
              +  T    KK N  + A+GLG M     L    I Y S EAV+  +     +++HA 
Sbjct: 446 RISSLETAPSIKKGNSENHALGLGAMNLHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAF 505

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIG-----------LLAEVRDELAMNRTSRL 744
           SAS +LA E G +  F+ + +  G +                  +  + D+  +   ++ 
Sbjct: 506 SASNKLALELGKFKDFENTKFADGSYFDKYTKVASDFWTCKTEKVQALFDKYQVKIPTQE 565

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +L   ++  G+ NS+ MAIAPT +I+ +   + S+ P    + V+         V +
Sbjct: 566 NWKQLVASIQKDGLANSHLMAIAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRIYVPA 625

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + ++                              D+ +     A+E+    +I   +  Q
Sbjct: 626 YKLDN-----------------------------DNYQYFKDGAYELGFEPIINIVAAAQ 656

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +DQA SL L++ D+ + + L+  Y  A+  G  + YY+R R 
Sbjct: 657 QHVDQAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQ 700


>gi|94990702|ref|YP_598802.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94544210|gb|ABF34258.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 719

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 289/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELDSIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PINGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN------RTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L  +            W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|94988800|ref|YP_596901.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94992685|ref|YP_600784.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94542308|gb|ABF32357.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546193|gb|ABF36240.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 719

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 287/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PINGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W 
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAEDWK 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|58584952|ref|YP_198525.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419268|gb|AAW71283.1| Ribonucleotide reductase, alpha subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 594

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 199/681 (29%), Positives = 315/681 (46%), Gaps = 103/681 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A       ++ ++ A   Y+
Sbjct: 6   INHEKNGKLTDFGKAVLSDRYLIEN-----ESYQDLFIRIANYY----SDNKEHAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVK-GSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++ A  + D FM+ V  +  W L SP                   
Sbjct: 176 IRKPTGGDPNRKALNIHHAVIVDDRFMQAVESDLEWNLISPY------------------ 217

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
                      KV   I A  +W K+LT   ETG P+I F D  N   P+ +  +   + 
Sbjct: 218 ---------NNKVISTIKARDIWIKILTARIETGEPYIIFLDAINNNKPESYKRLNLDIK 268

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + +   +   +R    VL++ 
Sbjct: 269 MSNLCSEITLTTGYDHLNKLRTAVCCLSSVNL-EYYKEWRHNELFIEDIMRFLDNVLEDF 327

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+     I++AK S    R+IGLG+MGF S L    +P+ S  A +   +  +++   A 
Sbjct: 328 INKAPDEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLRKQAD 387

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S +LA+E+GA                                         L  +   
Sbjct: 388 MVSKKLAEEKGAC----------------------------------------LDAKEIN 407

Query: 756 IGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           +  R ++ +AIAPTA+I+ I G +   I+P   N++ +  ++G F V N FL   L +++
Sbjct: 408 LMERFTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLLAEKN 467

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R  +I Q+QS+N
Sbjct: 468 QNNDKIWSSISTNEGSVQHLDFLNKHEKLTFRTAYELDQRWIIEHASDRTPYICQSQSVN 527

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L+L     K+ L  I+  AW  GLK+ YY RS+S    +K +             TD   
Sbjct: 528 LFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKASEMFQQRTD--- 584

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                         +EC  CQ
Sbjct: 585 -----------IDYSECLSCQ 594


>gi|294013208|ref|YP_003546668.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
 gi|292676538|dbj|BAI98056.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
          Length = 731

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/683 (30%), Positives = 303/683 (44%), Gaps = 107/683 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F      +A    +    A   Y+ 
Sbjct: 142 DASRDALLTDFGKDTLQDRYLLPG-----ESYQDLF----ARVAAAYADDADHAQRVYDY 192

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 193 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 252

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 253 NVRGIGEPV-GLNGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 311

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 312 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGKEFALRSPKD------------------- 352

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 353 --------QSVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRTMPKHHRDLGLKVSTS 404

Query: 583 NLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
           NLC+EITL +  +      TAVC L S+NL         ++      +   +R LDNV  
Sbjct: 405 NLCSEITLPTGRDHIGNDRTAVCCLSSLNL-----ETWDEWKDDRQFVEDVMRFLDNVLQ 459

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     + +AK S    R++GLG+MGF S L    +P+    A        + ++  
Sbjct: 460 DYIDRAPPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHVNEK 519

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              AS++LA ERG          D GV                                 
Sbjct: 520 VNEASMQLAVERGPCPD----AADMGVME------------------------------- 544

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L  
Sbjct: 545 -----RFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVA 599

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +     A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQS
Sbjct: 600 KAKDSTAVWNSILEKGGSVQHLDFLSQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQS 659

Query: 873 LNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL++     K  L  ++ +AW +G+K+ YYLRS+S      +     D  ++A      
Sbjct: 660 LNLFIPADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRAGFAGGVEADNTIDAPKFEIG 719

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
            +           T   EC  CQ
Sbjct: 720 ET-----------TDYDECLACQ 731


>gi|170017905|ref|YP_001728824.1| ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
 gi|169804762|gb|ACA83380.1| Ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
          Length = 723

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 298/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L   +   +  + ++   + +  + F +  L   L+ E  
Sbjct: 35  EALDAFLKENVWPNVLKFDSLAQRFDWLFDNQFIEREFIAQYDLSF-IEKLYAYLEGEH- 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y++Y L  N  +    + +  RVAM        +E  A++  + +   
Sbjct: 93  FNFKSFMAAFKFYNQYALKTNDGQY-YVETYVDRVAMNALYYANGQESLALKLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + VR
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNVR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + G    + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSIFHPDIMAFLSTKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V QN    LFSP +V  ++       +I  E Y+  
Sbjct: 272 NADEKVRVKTLSLGLTVPDKFYELVRQNKTMYLFSPVDVEKVYGQSFNYVDITAE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +   I  +R + A  L  ++  +  E+G+P+I   D  N  +     G + SSNLC+EI
Sbjct: 331 VENDAITKYR-VDARMLEEEISKLQQESGYPYIINIDVANREN--PIAGKIVSSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                  +               CNLGSIN++   A   FD     +++ T VR L  V 
Sbjct: 388 LQVQRPSDIDNGQQYTRLGSDVSCNLGSINIVNMMATQDFD-----TSVDTMVRALTFVS 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N    AIGLG MG  +      + Y   EA++        +++++I
Sbjct: 443 DTSNLDVVPSIDKGNKEKHAIGLGAMGLAAYFAQNQMYYGDEEALDFTTTFFMTLNYYSI 502

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDE 748
            +S+ +A+E    +  F+ S +  G +    I    + + +         +  ++  W  
Sbjct: 503 KSSMRIAKERHETFYEFEKSTYANGAYFDKYINNDWQPKTQKVAQAFAPHHLPTKNDWLT 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK  V   GM ++   AIAPT +I+ +   + ++ P    +  +                
Sbjct: 563 LKDDVAKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E MI  + Y          + D+    + +A++ D   +I+  +  Q+ ID
Sbjct: 608 ---------EGMIGKVYYPA------PGLSDETMPYYVSAYDTDMRKVIDVYAAAQEHID 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                D+ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 QGMALTLFMRSTLSDKLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|157827264|ref|YP_001496328.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
 gi|157802568|gb|ABV79291.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
          Length = 607

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 206/686 (30%), Positives = 313/686 (45%), Gaps = 97/686 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L  ++    +      G  IL DRY +       E  Q  F RV+   A    E ++ A
Sbjct: 8   KLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKEHA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG
Sbjct: 59  QKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETGDSLDDIVNLWTENVWLASRGGG 118

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 119 IGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEI 177

Query: 460 EEFLDLRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R+ TG D  R   +++    I D FM+ V  N  + L SP              
Sbjct: 178 EEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPATKK---------- 227

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQH 575
                            V  K+ A  LW K+LT   ETG P++ F D  N    +  ++ 
Sbjct: 228 -----------------VVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKL 270

Query: 576 VGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
              V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + + +     
Sbjct: 271 GLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIPTIMLFLDN 329

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     +  E++
Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S     ASV++ +E+GA                             A++  S        
Sbjct: 390 SKEVEEASVKIGKEKGACPD--------------------------ALDAGSNE------ 417

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                   R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   
Sbjct: 418 --------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I Q
Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K +   + G    +  
Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +              EC  CQ
Sbjct: 590 QNDKLA--------EANKYEECLACQ 607


>gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus]
          Length = 440

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/449 (38%), Positives = 258/449 (57%), Gaps = 19/449 (4%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L    L  + D + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP 
Sbjct: 10  LDVFLLNMMDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPM 69

Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L+V N+TA  ++QG  KR G +  YLE WH D+  FLD +KNTG+++ RT D+  A WIP
Sbjct: 70  LRVYNNTARYMDQGGNKRPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIP 129

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFMKRV  +  W+L   DE S L++++G EFE  Y        R   ++   + A  +W
Sbjct: 130 DLFMKRVKDDGEWSLMCLDECSGLNNVWGDEFERLYT------IRKRKEIQDYMKARVVW 183

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           + ++    ETG P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ 
Sbjct: 184 KAIIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVA 243

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L     + QFD+ KL   ++  VR L+ +IDIN + I KA+ SN  HR IG+G+ G   A
Sbjct: 244 LNMFVIDGQFDFFKLKDVVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADA 303

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             LL+ P+ S EA ++  +  E   + A+ AS ELA++ G Y S+  S    G+   D  
Sbjct: 304 FILLNYPFDSLEAQDLNKKIFET--YGALDASCELAEKEGPYESYVRSYASNGILQYDLW 361

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
            ++           +    W  LK ++KT G+RNS  +A  PTA+ A I   ++S+ P  
Sbjct: 362 NVVP----------SDLWNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYT 411

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            N+Y +  +SG+F VVN  L+  L ++ L
Sbjct: 412 SNIYTRRVLSGEFQVVNPHLLRVLTEKKL 440


>gi|21910585|ref|NP_664853.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28895724|ref|NP_802074.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|21904786|gb|AAM79656.1| putative ribonucleoside-diphosphate reductase 2 alpha subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810973|dbj|BAC63907.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes SSI-1]
          Length = 719

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 288/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|329116333|ref|ZP_08245050.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906738|gb|EGE53652.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 719

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/712 (23%), Positives = 296/712 (41%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  + +   +F +  LA+ +K E 
Sbjct: 32  KEALQAFFEENVIPNTKPFASITKKIEYLLKHDYIESEFISKYSKEF-IEELASIIKNE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + ++   RV           E+ A      + +
Sbjct: 90  NFQFNSFMAAYKFYQQYALKTNDGEYYL-ESLEDRVMFNALYFADGNEELAKSIAIEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYSVEKEYGIPYNYIDITAMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G V  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PVDGKVIMSNLCSE 384

Query: 588 I-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I        +N + E   +     CNLGS N+L    +  F      ++I+   R L  V
Sbjct: 385 ILQIQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GASIKAMTRALTFV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++  
Sbjct: 440 TDSSQIEAVPTIKNGNQQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWD 747
           +  S  +A+ER   ++ F+ S +  G +         +     V+D            W+
Sbjct: 500 LVESNNIARERQTTFTGFENSKYADGSYFDKYVTGKFVPQTDFVKDLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 TLRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATQHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPKELYEWKSESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|91205548|ref|YP_537903.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii RML369-C]
 gi|91069092|gb|ABE04814.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia bellii
           RML369-C]
          Length = 607

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 206/686 (30%), Positives = 313/686 (45%), Gaps = 97/686 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L  ++    +      G  IL DRY +       E  Q  F RV+   A    E ++ A
Sbjct: 8   KLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKEHA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG
Sbjct: 59  QKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLASRGGG 118

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 119 IGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPEI 177

Query: 460 EEFLDLRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R+ TG D  R   +++    I D FM+ V  N  + L SP              
Sbjct: 178 EEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPATKK---------- 227

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQH 575
                            V  K+ A  LW K+LT   ETG P++ F D  N    +  ++ 
Sbjct: 228 -----------------VVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKKL 270

Query: 576 VGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
              V  SNLC+EITL +  +      TAVC L S+NL  ++   + D + + + +     
Sbjct: 271 GLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIPTIMLFLDN 329

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL++ I+    T+ +AK S    R++GLG+MGF S L +  +P  S  A     +  E++
Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S     ASV++ +E+GA                             A++  S        
Sbjct: 390 SKEVEEASVKIGKEKGACPD--------------------------ALDAGSNE------ 417

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                   R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   
Sbjct: 418 --------RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I Q
Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529

Query: 870 AQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AQSLN++L     KK L+ I+ +AW  G+K+ YY RS S    +K +   + G    +  
Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +              EC  CQ
Sbjct: 590 QNDKLA--------EANKYEECLACQ 607


>gi|56698026|ref|YP_168397.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
 gi|56679763|gb|AAV96429.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
          Length = 760

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/643 (24%), Positives = 264/643 (41%), Gaps = 86/643 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E + ++   EFY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDQTVEDSWRRIARDLARVEQDPDRWEREFYTALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDAFMEAVKADGSWELQF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYHTVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    +N      + D + L   + TAVR++DNV+D +   + +    
Sbjct: 276 --YGACLLGSVNLARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA +  ++ +  I+  A  ASVELA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                      + T R   +++++ ++T G+RN+   +IAPT
Sbjct: 394 LFDAEKY--------------------LASGTMRAMDEDVREAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  D     
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDKFADA 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                       L      A  + P   +   +  QKWID + S  +   E  S      
Sbjct: 487 P-----------LPDYFVNAQTLAPADHVRMQAAAQKWIDSSISKTINCPEDISFDAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           +Y QAW +G K     R    T    +  +  D          
Sbjct: 536 VYMQAWDLGCKGCTTYRPNDVTGSVLTVSESADKAPGESASAP 578


>gi|251782829|ref|YP_002997132.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391459|dbj|BAH81918.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323127634|gb|ADX24931.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 719

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/714 (23%), Positives = 290/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA+ +K E 
Sbjct: 32  KEALEAFFTENVLPNTMSFASVTEKIEYLISNDYIESAFIQKYRPEF-ITELADVIKAE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F  ++     Y +Y L  N     +E  +   M  A+  A      E  A +    +
Sbjct: 90  NFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGNEALAKDLAIEM 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 INQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYD 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E  A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 327 ELVANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +  F       +I+   R L 
Sbjct: 383 SEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN------RTSRLP 745
             +  S  +A+ER   +  F  S +  G +    +      + +L  +            
Sbjct: 498 WTLVESNNIARERQTTFVGFDKSKYADGTYFDKYVTGQFVPKSDLVKDLFKDHFIPQASD 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +             
Sbjct: 558 WEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------ 605

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  I  + Y    + + + IP      + +A+++D   +I+  +   +
Sbjct: 606 ------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|163738452|ref|ZP_02145867.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
 gi|161388373|gb|EDQ12727.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 765

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 157/661 (23%), Positives = 266/661 (40%), Gaps = 86/661 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E++ +    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGSWELIF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV++ + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYQTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     N      + D + L   + TAVR++DNV+D++   ++   + 
Sbjct: 276 --YGACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +      +D                      ++++  ++  G+RN+   +IAPT
Sbjct: 394 LFDADAYLASGTMMDMD--------------------EDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W +          
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRDKFGDK----- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + P   ++  +  QKWID + S  +   E  S      
Sbjct: 487 -----------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +Y QAW +G K     R    T    S  +  D            +     G        
Sbjct: 536 VYMQAWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMS 595

Query: 948 T 948
            
Sbjct: 596 E 596


>gi|139473585|ref|YP_001128301.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|134271832|emb|CAM30067.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 719

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 287/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W 
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVAKSDLVKSLFKDHFIPQASDWK 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|157955355|gb|ABW06060.1| NrdE [Bacillus thuringiensis serovar dakota]
          Length = 694

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/714 (23%), Positives = 306/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I   S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|84683506|ref|ZP_01011409.1| ribonucleoside-diphosphate reductase, putative [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668249|gb|EAQ14716.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2654]
          Length = 758

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/650 (24%), Positives = 261/650 (40%), Gaps = 91/650 (14%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ ++   +  + R+A  LA  E E   RA EFY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKEADGTAVDKTIEDTWHRIADALADSEPE---RAGEFYAALEDFKFLPAGR 67

Query: 357 TLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT       +   + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 68  ITAGAGTARNVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGV 127

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 128 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAA 183

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V     W L                               + 
Sbjct: 184 RLRMFNMSVLVTDPFMEAVKSGGAWDLTF-----------------------------DG 214

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +R + A  LW K++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 215 TTYRTVEARDLWNKIMQATYDYAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPP-- 272

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     +        DYD L+  + TAVR++DNV+D +   +E+  + 
Sbjct: 273 --YGACLLGSINLARLVEHPFEEAATLDYDALSDLVTTAVRMMDNVVDASRFPLEQQARE 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    +  M+ I+  A  ASVELA+E+G + 
Sbjct: 331 AEAKRRIGLGVTGLADALLMLGLRYGSDEAAAQTEVWMKAIARAAYLASVELAKEKGPFP 390

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                        +  D++++ ++  G+RN+   +IAP
Sbjct: 391 LFDAEAYLASGSLQ--------------------HMD-DDVREAIREHGIRNALLTSIAP 429

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W +         
Sbjct: 430 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRDKFGD----- 482

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                       DL      A  + PM  ++  +  QKW+D + S  +   E  S +   
Sbjct: 483 -----------ADLPDYFVNAQTLAPMDHVKMQAAAQKWVDSSISKTINCPEDISFEGFK 531

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +Y +AW  G K     R    T    S  +            D     H
Sbjct: 532 DVYMEAWETGCKGCTTYRPNDVTGSVLSVSEEKAAPEVLSTTDDEPRQPH 581


>gi|209559613|ref|YP_002286085.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540814|gb|ACI61390.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 719

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 289/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEF-ITELDSIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN------RTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L  +            W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|71903781|ref|YP_280584.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|71802876|gb|AAX72229.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
          Length = 719

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 288/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEF-ITELDSIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L               W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|296111475|ref|YP_003621857.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833007|gb|ADG40888.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 723

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/713 (22%), Positives = 294/713 (41%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L   +   +    ++   + +   +F +  L   L   + 
Sbjct: 35  EALDAFLKENVWPNVMQFDSLSERFDWLFQNNFLERTFIEKYRFEF-IESLYAYLD-AQH 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y++Y L  N  +    + +  RVAM        +E+ A+   + +   
Sbjct: 93  FNFKSFMAAFKFYNQYALKTNDGQH-YVETYVDRVAMNALFYADGREELALRLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNIR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +      + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPVMAIANSAGGIVPVMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMSFLSTKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +N    LFSP +V  ++       +I  E Y+  
Sbjct: 272 NADEKIRVKTLSLGLTVPDKFYELVKKNDVMYLFSPVDVEKVYGKAFNYIDITAE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +I  ++ + A  L  ++  +  E+G+P+I   D  N  +     G + SSNLC+EI
Sbjct: 331 VANDQITKYK-VDARTLEEEISKLQQESGYPYIINIDVANRSN--PISGKIVSSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +  +               CNLGSIN++   A   F       ++ T VR L  V 
Sbjct: 388 LQVQTPSDIDNGQQYTRLGSDVSCNLGSINIVNMMATADF-----GESVDTMVRALTYVS 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K NH   AIGLG MG  +      + Y   EA++        +++++I
Sbjct: 443 DTSNLDVVPSIAKGNHEKHAIGLGAMGLAAYFAQNKMYYGDDEALDFTSTFFMTLNYYSI 502

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM------NRTSRLPWDE 748
            ASV +A+E    +  F  S +  G +    +      +    +      +  ++  W +
Sbjct: 503 KASVAIAKERHEKFFEFDKSTYANGSYFDKYLETDWAPKTNKVIEAFAQHHIPTKHDWVQ 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+  V   GM N+   AIAPT +I+ +   + ++ P    +  +                
Sbjct: 563 LRDDVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E MI  + Y    + N      +    + +A++ D   +I+  +  Q+ ID
Sbjct: 608 ---------EGMIGKVYYPAPGLNN------ETMPYYVSAYDTDMRKVIDVYAAAQEHID 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 QGMALTLFMRSTLPDGLYEWKNNRTNKMTTRDLTILRHYAFNKGIKSLYYIRT 705


>gi|302391884|ref|YP_003827704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
 gi|302203961|gb|ADL12639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
          Length = 749

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/692 (25%), Positives = 285/692 (41%), Gaps = 143/692 (20%)

Query: 300 ILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFY---NLLSSFHFMCST 355
           +L DRY         +E P+  F+RVA  +A  E ++EK+        NL++ F F+ ++
Sbjct: 12  LLEDRYLKRNEKREIVETPEELFIRVAENIAAAEEDEEKQEYYEEEFYNLMTDFKFLPNS 71

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+GT   QL++CF+  V D + GIF A++  A++ K  GG G  ++ +R     + 
Sbjct: 72  PTLMNAGTELQQLAACFVLPVEDSMEGIFTAVRNAALIHKSGGGTGFAFSRLRPKDDVVK 131

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T G S G + F+KV N     V QGGKR+GA    L   H D+ +F+  +    D  + 
Sbjct: 132 STGGVSSGPLSFMKVFNSATNTVKQGGKRRGANMGMLRVDHPDILDFIHAKGELNDKNQE 191

Query: 476 THD----------------------------------MNTANWIPDLFMKRVTQNAGWTL 501
            +D                                   N +  + D FM+ V  +  + L
Sbjct: 192 LYDEFKESLEDTYLAPEVIDKKLKQYKQKLLDDQFSNFNLSVGVTDEFMEAVKNDENYEL 251

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            +P                              +V  ++ A  ++  ++   ++ G P +
Sbjct: 252 INPRTG---------------------------QVVGELDARKVFNLIVKYAWKNGEPGL 284

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            F D  N ++P  ++G + ++N C E  L  +      CNLGSINL     +   D+++L
Sbjct: 285 VFLDEINHKNPVPNLGEIEATNPCGEQPLLPNE----ACNLGSINLSKFVDDGTVDWEEL 340

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             TI  AVR LDNVID+N + ++K ++     R IGLG+MGF   L  L I Y S EAVE
Sbjct: 341 KETIDLAVRFLDNVIDMNNYPLDKIEEQVMKARKIGLGVMGFHEMLIKLGIAYNSDEAVE 400

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A + M+FI+ HA   S +LA+E+GA+ +++ S +                         
Sbjct: 401 MAKKVMKFINEHAHQYSQKLAEEKGAFPAWEESKY------------------------- 435

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                            RN+    IAPT +I+ + G S  I+P +   Y  ++  G+ + 
Sbjct: 436 -------------KTPKRNATLTTIAPTGSISFLAGTSGGIEPFFDFSYTHTDGDGNTSR 482

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                 +E ++                              ++  T  +I P W I+  +
Sbjct: 483 FEYDFTSEAEE------------------------------EVLVTTMDIAPEWHIKIQA 512

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q ++D A S  +   +  + + +   Y  A+ +  K     R  S    E   LK  D
Sbjct: 513 AFQNYVDNAVSKTINLPNTATKEDIREAYILAYELNCKGLTVYRDGSR---ESQVLKSSD 569

Query: 921 GKLNAVPVTDP--NSSTHSLGIPSSCTSDTEC 950
            K      TD     +   +    +   DT C
Sbjct: 570 DKKEETLRTDKIYPRTRPLIADGKTVRYDTGC 601


>gi|154149571|ref|YP_001403189.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Methanoregula boonei 6A8]
 gi|153998123|gb|ABS54546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoregula boonei 6A8]
          Length = 741

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/624 (25%), Positives = 256/624 (41%), Gaps = 93/624 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           IL  RY                 RVA  LA  E E+ +    FY  + S  F+ ++PTL 
Sbjct: 10  ILSARYLRKGEKDFT----DICRRVASALADDENERAR----FYEAMISLRFLPNSPTLM 61

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF   VPD + GIF A++E A++ K  GG G +++ +R  G+ +  T+G
Sbjct: 62  NAGTEIGQLSACFTLPVPDTIDGIFDAMKEGAIIHKTGGGTGYNFSHIRPEGSPVQSTDG 121

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G I F++V N     + QGG+R+GA    L  WH D+  F+  +K  G+      + 
Sbjct: 122 VASGPISFMRVFNAATDVIKQGGRRRGANMGILNVWHPDILAFISAKKKEGEFS----NF 177

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM  V   +                                   +     K
Sbjct: 178 NISVMVNDKFMDLVAAKSF----------------------------ETVWLTKGGTGEK 209

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I+   +W  ++  +++ G P I F D  N  +P   +G + ++N C E  L         
Sbjct: 210 ITVGQIWNGIVEGIWKNGEPGILFYDEINRHNPTPQLGEIDTTNPCGEQPLLPYES---- 265

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C LGSINL A      FD D L  T R A R LD VI+ N   I +  ++    R IGLG
Sbjct: 266 CVLGSINLAACVREGAFDEDLLRDTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGLG 325

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MG   A+ +L + Y S +     +  M+ I+  AI  S  LA++ G + +++GS+W   
Sbjct: 326 VMGVHDAMLMLGLSYDSEKGRAWCEWVMKVITETAIEESHRLAEKLGTFPAWQGSIW--- 382

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                             K   +RN+    +APT TI+ + G S
Sbjct: 383 ----------------------------------KDYEVRNAAMTTVAPTGTISLLAGCS 408

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD-----------LKYHD 828
             I+P +   Y + N  G   V+ + +  E     L       D             +  
Sbjct: 409 SGIEPIFSFAYTRKNTVGKVFVIVNPVFKEALLHTLTGMGYAGDEREKKAGEVISHVHET 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ ++  +  + + +  TA +I     I   +  QK++  + S  + +    +      
Sbjct: 469 GSMQDVAWLSAEFRGLFKTALDIPWREHILMQACFQKYVHASISKTINMPGSATKDDCAE 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATSV 911
               AW +GLK     R+ S   V
Sbjct: 529 ALLMAWKLGLKGITIYRTGSREDV 552


>gi|126733656|ref|ZP_01749403.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
 gi|126716522|gb|EBA13386.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
          Length = 760

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/663 (24%), Positives = 262/663 (39%), Gaps = 88/663 (13%)

Query: 299 QILYDRY-FLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I E     + R+A  LA  E +      +FY+ L  F ++ +  
Sbjct: 11  QIWDMKYRFKEADGTPIDETVADTWTRIAGALAAVEDDPTAWESKFYDALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 MGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L    E                            
Sbjct: 187 RLRMFNMSVLITDPFMEAVKADGPWDLIFGGE---------------------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A  LW  ++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTVQARELWDAIMRSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+     +        D   L   + TAVR++DNV+D +   +E  +  
Sbjct: 276 --YGACLLGSINMARLVKDPFEDIAALDEAALTDLVATAVRMMDNVVDASRFPLEAQQAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    D+ M  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AKAKRRIGLGVTGLADALLMVGLRYGSQEAAAQTDKWMHQIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G       G+ A+VRD                  +   G+RN+   +IAP
Sbjct: 394 LFDAEQFLASGAMQ----GMDADVRDA-----------------IAEHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  LW +         
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--LWRD--------- 481

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
              +     +PD        A  + P+  +   +  QKWID + S  +   E  S     
Sbjct: 482 ---LKGDAPLPD----YFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            +Y  AW  G K     R    T    S  +          V   +     + +      
Sbjct: 535 EVYMAAWDQGCKGCTTYRPNDVTGSVLSVSQEASPSEVPAQVRTEDEGAEVVYMSEPLDR 594

Query: 947 DTE 949
             E
Sbjct: 595 PQE 597


>gi|326692190|ref|ZP_08229195.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           argentinum KCTC 3773]
          Length = 723

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 300/713 (42%), Gaps = 80/713 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +       +   L   +   +    ++   + +  + F +  L   L+ E +
Sbjct: 35  EALDAFLTENVWPNVLKFDSLSERFEWLFEHNFLERAFIEQYRLAF-IEELYAYLEGE-N 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y++Y L  N  +    + +  RVAM         E  A+   + +   
Sbjct: 93  FHFKSFMAAFKFYNQYALKTNDGQY-YVETYIDRVAMNALYYAAGNEALALRLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + G    + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +N    LFSP +V  ++ +     +I  E Y+  
Sbjct: 272 NADEKIRVKTLSLGLTVPDKFYELVRKNEDMYLFSPADVEKVYGVPFNYVDITAE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +I  +R ++A  L  ++  +  E+G+P+I   D  N  +     G + SSNLC+EI
Sbjct: 331 VANDQITKYR-LNARTLEEEISKLQQESGYPYILNVDVTNRAN--PIAGKIVSSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
               +  E               CNLGSIN++   A   F      +++ T VR L  V 
Sbjct: 388 LQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATPDF-----ETSVDTMVRALTFVS 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +    K N    AIGLG MG  +      + Y    +++        +++++I
Sbjct: 443 DTSNLDVVPSIAKGNQEKHAIGLGAMGLAAYFAQNQMYYGDEASLDFTSTFFMTLNYYSI 502

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDE 748
            AS++LA+E +  +  F  S +  G +       D      +V D  A  +  ++  W E
Sbjct: 503 KASMKLAKERQEKFFEFDKSTYADGSYFDKYLTQDWTPKTPQVADAFANHHVPTQRDWLE 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   GM ++   AIAPT +I+ +   + ++ P    +  +                
Sbjct: 563 LKENVMKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E MI  + Y    + N      +    + +A++ D   +I+  +  Q+ ID
Sbjct: 608 ---------EGMIGKVYYPAPGLNN------ETMPYYVSAYDTDMRKVIDVYAAAQEHID 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  +L L++                ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 QGMALTLFMRSTLSTALYEWKKGRTEKMTTRDLTILRHYAFNKGIKSLYYVRT 705


>gi|110681184|ref|YP_684191.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
 gi|109457300|gb|ABG33505.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
          Length = 832

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/639 (25%), Positives = 261/639 (40%), Gaps = 88/639 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ ++   +  + R+A  LA  E   E    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKAADGAPLDVTVEDTWRRIARDLARVEKTPEVWEEKFYAALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLITDPFMEAVKADGPWDLVF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 KVYRTVQARDLWNRIMQATYDYAEPGVIFIDRINQANNLSYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    +N        D   L   + TAVR++DNV+D +   +E   + 
Sbjct: 276 --YGACLLGSINLARLVSNPFEDTAALDEAALDDLVATAVRMMDNVVDASKFPLEAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    D  +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALLMMGLRYGSDEAARQTDRWLHSIARAAYLASVDLAREKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                           ++++  V+  G+RN+   +IAP
Sbjct: 394 LFDADKYLASGTMQ---------------------AMDEDVRDAVREHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  LW E         
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--LWREKFGDK---- 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LD 886
                       +L      A  + P+  ++  +  QKW+D + S  +   E  G     
Sbjct: 487 ------------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            +Y +AW  G K     R  + T    S  +    K +A
Sbjct: 535 DVYMEAWDSGCKGCTTYRPNAVTGSVLSVSEEKPSKQDA 573


>gi|294676157|ref|YP_003576772.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294474977|gb|ADE84365.1| ribonucleoside-diphosphate reductase NrdJ-1
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 755

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/660 (23%), Positives = 268/660 (40%), Gaps = 90/660 (13%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G  ++   +  + RVA  LA  E +      +FY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKDADGLPLDASVEDSWRRVARDLASVEADPAHWEPKFYAALEDFKFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ILAGAGTGRAVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAAV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  ++    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKQ----DSA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNLSVLITDAFMEAVKADGPWELVF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  ++A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L    
Sbjct: 218 KVYHTLNARDLWNKIMRATYDFAEPGVIFIDRINAMNNLAYLEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL            + D   L   +RT+VR++DNV+D +   + + +  
Sbjct: 276 --YGACLLGSVNLARLVTAPFTDQARLDLAALDELVRTSVRMMDNVVDASRFPLPQQQAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y   +A    +  M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AANKRRIGLGVTGLADALLMLGLRYGDDKAAAQTEAWMKAIARAAYLASVDLAREKGAFP 393

Query: 710 SFKGSLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            F    +     +  +D                      +++++ + T G+RN+   +IA
Sbjct: 394 LFDAEKYLSSGNMLQMD----------------------EDVRQAIATHGIRNALLTSIA 431

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW + M  D+  
Sbjct: 432 PTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVK--LWRD-MKGDVA- 487

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
                         L      A  + PM  ++  +  QKWID + S  +      S    
Sbjct: 488 --------------LPAYFVNAQTLAPMDHVKMQAAAQKWIDSSISKTINCPVDISFDDF 533

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             +Y  A+  G K     R    T    +  +  +         +    T  L  P+S  
Sbjct: 534 KDVYMAAFESGCKGCTTYRPNDVTGSVLTVSEKSEKTPETDKGAEVVYLTEPLDRPASLE 593


>gi|56964872|ref|YP_176603.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           clausii KSM-K16]
 gi|56911115|dbj|BAD65642.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus clausii
           KSM-K16]
          Length = 698

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/724 (23%), Positives = 303/724 (41%), Gaps = 76/724 (10%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +I K+  Y     +  +           Y        H+++    E     IE       
Sbjct: 15  MITKDGGYQFEKDKEAVHS-----YFVDYINQNTVFFHDLE----EKIDYLIENDYYEEE 65

Query: 269 LHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVA 325
           L   +   D +    D+ Y + F F  ++     Y+ Y L  N     +E  +     V+
Sbjct: 66  LL-RLYTIDEIKAVMDIAYNKKFRFPSFMSAFKFYNDYALKTNDKSKILERYEDRVAIVS 124

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIF 384
             L     + EK A    N + S  F  +TPT  N+G  R  +L SCFL  + D L  I 
Sbjct: 125 --LFFGNGDVEK-AKALVNAMISQEFQPATPTFLNAGRKRRGELVSCFLLEINDSLNDIS 181

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G+R
Sbjct: 182 RAVDISMQLSKLGGGVALNLSKLRAKGEAIKDVANATKGVVGVMKLLDNAFRYADQMGQR 241

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +G+  AYL  +H D+ +FLD RK + D+  R   ++    IPD F++ + ++    LF P
Sbjct: 242 QGSGAAYLNIFHADINDFLDTRKISADEDVRVKTLSIGVVIPDKFIELMREDKDAYLFYP 301

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             V   +  +  E ++  E YE   D   ++   KI+   L++K+  +  E+G+P+I F 
Sbjct: 302 HTVYKAYGQHFDEMDME-EMYETLVDDPRVRK-EKINPRRLFQKLAILRSESGYPYIMFA 359

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFA 612
           D  N      H+  V  SNLC+EI       T     EE  +     CNLGSIN++    
Sbjct: 360 DNVNKAHANGHISNVKFSNLCSEILQASEVSTYTDYGEEDEIGLDISCNLGSINIMNVME 419

Query: 613 NNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           N       L +T+  A   L  V +  N       ++ N   ++IGLG M     L   H
Sbjct: 420 NKS-----LENTVSLATDALTRVSESTNITNAPAVRRGNKLMKSIGLGAMNLHGYLAKQH 474

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DS 725
           I Y S EA + A+     +++ +I  S E+A+++   Y  ++GS +  G +       D 
Sbjct: 475 IAYESEEARDFANTFFMAMNYFSIKRSAEIARDQGETYHGYEGSTYADGSYFKKYIENDF 534

Query: 726 IGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                +V+     M   ++  W  L+  V   G+ +S  +AIAPT +I+ +   + S+ P
Sbjct: 535 TPKFDKVKALFDGMFVPTKEDWQALQAFVAEHGLYHSYRLAIAPTGSISYVQSATASVMP 594

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             + +  ++  +                                     +  +  +    
Sbjct: 595 IMERIEERTYGNSKTYYP-------------------------------MPGLNANNWFF 623

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT YY 
Sbjct: 624 YKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYA 683

Query: 904 RSRS 907
           R++ 
Sbjct: 684 RTKD 687


>gi|163742138|ref|ZP_02149526.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161384468|gb|EDQ08849.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
          Length = 765

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/661 (23%), Positives = 266/661 (40%), Gaps = 86/661 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E++ +    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGSWELIF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+++ + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KIYQTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     N      + D + L   + TAVR++DNV+D++   ++   + 
Sbjct: 276 --YGACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +      +D                      ++++  ++  G+RN+   +IAPT
Sbjct: 394 LFDADAYLASGTMMDMD--------------------EDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W +          
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRDKFGDK----- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + P   ++  +  QKWID + S  +   E  S      
Sbjct: 487 -----------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +Y QAW +G K     R    T    S  +  D            +     G        
Sbjct: 536 VYMQAWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMS 595

Query: 948 T 948
            
Sbjct: 596 E 596


>gi|296330953|ref|ZP_06873428.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674471|ref|YP_003866143.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151958|gb|EFG92832.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412715|gb|ADM37834.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 700

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/726 (22%), Positives = 308/726 (42%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  +       +  + 
Sbjct: 7   PKWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIENQYYEE 66

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
             L  S+  F+ +       Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 67  EFL--SLYSFEDIKAVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  +TEK   A E+ NL+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDTEK---AKEYVNLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++  E Y++  D   +    KI+   L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDM-NEMYDKFVDNPRV-KKEKINPRKLLEKLAMLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDVEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  ++  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S E+A+E+   +  ++GS +  G +    +  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVST 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E        M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 DFSPKYEKIANLFEGMHIPTTEDWKQLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|163744560|ref|ZP_02151920.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381378|gb|EDQ05787.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 759

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/654 (24%), Positives = 267/654 (40%), Gaps = 91/654 (13%)

Query: 299 QILYDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y         +    +  + R+A  LA  E++ +    +F+  L  F ++ +  
Sbjct: 11  QIWDMKYRFKGADGTAKDVTVEDTWRRIARDLAQVESDADGWEDKFFGALEDFKYLPAGR 70

Query: 357 TLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARRVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G +  + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 LGVSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L           L+G +                 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGSWDL-----------LFGGK----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V++ + A  LW  ++   +    P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYKTVQARDLWNNIMQATYSYAEPGVIFIDRINAANNLNYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    A         D D ++  + TAVR++DNV+D++   + +    
Sbjct: 276 --YGACLLGSINLARLVAQPFDEAAHLDQDAMSELVATAVRMMDNVVDVSNFPLPEQANE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S EA    +  ++ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMVGLRYGSDEAAAQTESWLKAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                           D+++  ++  G+RN+   +IAP
Sbjct: 394 LFDAEKFLASGTMQQ---------------------MDDDVRDAIREHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  +LK  
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRELK-- 483

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                    +PD        A  + P   ++  +  QKWID + S  +   E  S     
Sbjct: 484 -----GDTPLPD----YFVNAQTLPPADHVKMQAAAQKWIDSSISKTINCPEDISFDDFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
            +Y QAW MG K     R    T    S L     K +  P   P+  +    I
Sbjct: 535 DVYMQAWDMGCKGCTTYRPNDVTG---SVLSVSSEKTDKAPADSPDQVSEGGEI 585


>gi|83952673|ref|ZP_00961403.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
 gi|83835808|gb|EAP75107.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
          Length = 820

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 154/639 (24%), Positives = 256/639 (40%), Gaps = 90/639 (14%)

Query: 304 RYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           RY    +G+  +   +  + R+A  LA  E         F+  L  F ++ +      +G
Sbjct: 4   RY-KEPDGTVHDGSVEDTWRRIARALAQAEKTPADWEGRFFEALEDFKYLPAGRITAGAG 62

Query: 363 TRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           T     L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G    
Sbjct: 63  TGRSVTLFNCFVMGTVPDDMGGIFDMLREAALTMQQGGGIGYDFSTIRPRGADVKGVGAD 122

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R    N
Sbjct: 123 ASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIAAK----SDPARLRMFN 178

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM+ V  +  W L                               + KV+R I
Sbjct: 179 LSVLVTDPFMEAVRADGSWDLIF-----------------------------DGKVYRTI 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  ++   ++   P + F D  N ++   +V  + ++N C E  L         C
Sbjct: 210 QARDLWNTIMQATYDYAEPGVIFIDRINAQNNLNYVETIAATNPCGEQPLPP----YGAC 265

Query: 601 NLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            LGSIN+    A+        D   L   + TAVR++DNV+DI+   +   +      R 
Sbjct: 266 LLGSINMARLVADPFSEAAHLDEGALNDLVETAVRMMDNVVDISRFPLPAQEAEAQNKRR 325

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G   AL ++ + Y SPEA E     M  I+  + +AS  LA E+GA+  +    
Sbjct: 326 IGLGVTGLADALAMVGLRYGSPEAAEQTGVWMARIANASYAASARLAGEKGAFPLYDAKA 385

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +                        +L   E +  +   G+RN+   ++APT TI+  
Sbjct: 386 YAKAPM-------------------IKKLD-AETRALIAEHGLRNALLTSVAPTGTISLY 425

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G  S  I+P + N Y +  +  D +     +V+       +   M  D+K         
Sbjct: 426 AGNVSSGIEPIFANSYTRKVLQKDGSRTEEEVVD-------YAVQMWRDVKGDAP----- 473

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
                 L +    A  + P   +   +  Q W+D + S  +   E    +    +Y QAW
Sbjct: 474 ------LPEYFVNAQTLSPADHVRMQAAAQDWVDSSISKTINCPEDIDFEAFKDVYMQAW 527

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             G K     R    T     ++  V+   NA   T  +
Sbjct: 528 DTGCKGCTTYRPNDVTG----SVLSVEAPANATAATGKD 562


>gi|260574979|ref|ZP_05842981.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259022984|gb|EEW26278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 761

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/641 (25%), Positives = 263/641 (41%), Gaps = 86/641 (13%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ I+   +  + RVA  LA  E +       FY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKDASGTAIDGTIEDSWRRVARALAEVEAKPALWEDRFYAALEGFKFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD++ GIF +L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTGRTVTLFNCFVMGTIPDNMAGIFESLKEAALTMQQGGGIGYDFSTIRPRGAEV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE F++ +K    D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFIEAKK----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM  V  +  W L   D                             
Sbjct: 187 RLRMFNLSVLITDAFMAAVKADGPWELCFGD----------------------------- 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV++   A  LW +++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYKTCQARDLWNRIMRNTYDFAEPGVIFIDRINAMNNLAYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    +N        D   L   +RTAVR++DNV+D +   + +    
Sbjct: 276 --YGACLLGSINLATLVSNPFAANAALDLAALDELVRTAVRMMDNVVDASRFPLPEQAVE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S  A    +  M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALLMLRLRYGSDAAAAQTEAWMQAIARAAYLASVDLAREKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                      + T R    +++  ++  G+RN+   +IAPT
Sbjct: 394 LFDAEKY--------------------LASGTMRQMDGDVRDAIRKHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   +  LW E          
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYSRKVLQKDGSRTEEEVVDYAVR--LWRE---------- 481

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
            + G+       L      A  + P+  +   +  QKW+D + S  +   E  S      
Sbjct: 482 -THGDAP-----LPDYFVNAQTLPPLDHVWMQAAAQKWVDSSISKTINCPEDISFDDFQQ 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           +Y  AW  G K     R  + T    +  +  D   +  P 
Sbjct: 536 VYMAAWDQGCKGCTTYRPNAVTGSVLTVSEASDKTPSEAPA 576


>gi|154686151|ref|YP_001421312.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens FZB42]
 gi|154352002|gb|ABS74081.1| NrdE [Bacillus amyloliquefaciens FZB42]
          Length = 700

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 169/726 (23%), Positives = 302/726 (41%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  E     IE     
Sbjct: 7   PKWIQLNNEIMIQQDGKFQFDKDKEAVHSYFVDYINQNTVYFHDL-KEKLDYLIENQYYE 65

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
                     D+  +     Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 66  EEFLSLYSFEDIKEVFKT-AYAKKFRFPSFMSAFKFYNDYALKTNDKKRILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  +TEK   A E+ NL+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDTEK---AKEYVNLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++    YE   D   +    K++A  L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDMT-AMYEELVDNPRV-KKEKVNARKLLEKLAVLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      HV  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKEHANNHVSKVKFSNLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N   +  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMKHKSIERTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S ELA+E+   +  ++GS +  G +    I  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEK 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                 E        M+  +   W ELK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 EFSPAYEKIAALFEGMHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ IDQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|183601892|ref|ZP_02963261.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190382|ref|YP_002967776.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195788|ref|YP_002969343.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218777|gb|EDT89419.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248774|gb|ACS45714.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250342|gb|ACS47281.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793369|gb|ADG32904.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 698

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/720 (23%), Positives = 284/720 (39%), Gaps = 98/720 (13%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD---------------------FA 292
           E    ++ E V  R++        L YL +   YE D                       
Sbjct: 18  EAVDAFLAEHVAPRMIRFESTRERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHR 77

Query: 293 F-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F  +LG    Y  Y L        +E        V++ LA  +   E  A+   + +   
Sbjct: 78  FETFLGAFKFYRSYALKTFDGEHYLEDFPQRAAAVSLALADGD---EPMAMRTLDEIVLG 134

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N G  +  +  SCFL  + D++  I   +     L+K  GG+    + +R
Sbjct: 135 RFQPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLR 194

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I     +S GV+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++ 
Sbjct: 195 EEGAPIKHIENQSSGVVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRE 254

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   +     IPD+  +   +     LFSP +V  ++ +   +  +  +  E  
Sbjct: 255 NADEKIRIKSLALGVVIPDITFELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEML 314

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           AD    K F  I A   +  +  + FE+G+P++ F+D  N  +     G +  SNLC+EI
Sbjct: 315 ADDRIRKTF--IDAREFFTTLAEIQFESGYPYLLFEDTANAAN--PIDGRITMSNLCSEI 370

Query: 589 TLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS+N+             LA  + TA+R L  V 
Sbjct: 371 LQVQEPSTYYEDLSYAHVGRDVSCNLGSLNIARAMDAG------LAGPVETAIRALTAVS 424

Query: 637 DIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                  +    ++N    AIGLG M     L    I Y SPEA++  +   E ++FHA 
Sbjct: 425 QHTHIGAVPSIARANEEGHAIGLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAY 484

Query: 696 SASVELAQER-GAYSSFKGSLWDQ----GVFPIDSI----------GLLAEVRDELAMNR 740
            AS  LA E   A++ F  S + +    G +    +          G +  + +   +  
Sbjct: 485 RASHALAVENGHAFARFADSAYARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRI 544

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W EL+  +   G+ N    A+ PT +I+ I   + SI P    + ++        
Sbjct: 545 PTARDWRELQGEILRDGIYNQYLQAVPPTGSISYINHATSSIHPIASKIEIRK------- 597

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                            E  I  + Y          + +D   ++  A+EI    ++++ 
Sbjct: 598 -----------------EGKIGRMYYPA------PYMTNDNLDLYDDAYEIGWKAIVDTY 634

Query: 861 SRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     +DQ  SL L + D  + + L+     AW  G+KT YY+R R   ++E + + G 
Sbjct: 635 AEATPHVDQGLSLTLFFPDTVTTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAGC 693


>gi|31791752|ref|NP_854245.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium bovis AF2122/97]
 gi|121636488|ref|YP_976711.1| putative ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988960|ref|YP_002643647.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617338|emb|CAD93447.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium bovis
           AF2122/97]
 gi|121492135|emb|CAL70600.1| Probable ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772073|dbj|BAH24879.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 710

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/751 (23%), Positives = 297/751 (39%), Gaps = 130/751 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DGTL+ F+  R+E  V  A                                    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA------------------------------------ 31

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     A+ + + L R +               ++ +      R  E G+ 
Sbjct: 32  AREVACDDPDMPGTVAKAVADALGRGIA-------------PVEDIQDCVEARLGEAGLD 78

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                  +       L  A  L   RD        + +L +RY LH   G   E      
Sbjct: 79  DVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELM 138

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E + E     + A  F  LL +  F+ ++PTL NSGT    L+ CF+  +
Sbjct: 139 DRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPI 198

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A 
Sbjct: 199 EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAG 258

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +N
Sbjct: 259 VVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERN 315

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                               +  ++ A  L+  +       
Sbjct: 316 GLHRLVNPRTGK---------------------------IVARMPAAELFDAICKAAHAG 348

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ + 
Sbjct: 349 GDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRV 404

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY S
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDS 464

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                  
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSG---------------- 508

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                                 RN+   ++APT TI+ I G +  I+P +   + ++ + 
Sbjct: 509 --------------------PRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVG 548

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                VN       + R  + + +I+++    G +    R+P +++    TA EI P W 
Sbjct: 549 RHLLEVNPCFDRLARDRGFYRDELIAEI-AQRGGVRGYPRLPAEVRAAFPTAAEIAPQWH 607

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           +   +  Q+ ++ A S  + L   +G+ +  
Sbjct: 608 LRMQAAVQRHVEAAVSKTVNLP-ATGRSMTS 637



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 98


>gi|116617383|ref|YP_817754.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096230|gb|ABJ61381.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 723

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/715 (23%), Positives = 292/715 (40%), Gaps = 84/715 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +           L       +    ++   + +  + F +  L   L  E  
Sbjct: 35  EALNAFLDENVLPNVMHFDSLQERLDWMFDHRFLEREFIQKYNITF-IEKLYTYLAGEH- 92

Query: 291 FAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  ++     Y++Y L  N     IE  +    RVAM         E  A+   + + 
Sbjct: 93  FKFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMI 149

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA + G +  + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +
Sbjct: 210 VREAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F   V QN    LFSPD+V  ++       +I  E Y+
Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +I+  ++I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+
Sbjct: 329 NMVANDKIRK-QRIDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCS 385

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGSIN++     N F       ++ T VR L  
Sbjct: 386 EILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTF 440

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  N   +      N    AIGLG MG  +      + Y   EA++        ++++
Sbjct: 441 VSDSSNLDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEEALDFTSTFFMMLNYY 500

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
           +I +S+ +A+E    +  F  S +  G +    +      + E         +  +   W
Sbjct: 501 SIKSSMGIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +LK+ V   GM N+   AIAPT +I+ +   + S+ P    +  +              
Sbjct: 561 AQLKEDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQ------------- 607

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E MI  + Y    + N      +    + +A++ D   +I+  +  Q+ 
Sbjct: 608 -----------EGMIGKVYYPAPGLSN------ETMPYYVSAYDTDMRRVIDVYAAAQEH 650

Query: 867 IDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ  +L L++                ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 651 IDQGMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705


>gi|194014861|ref|ZP_03053478.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194013887|gb|EDW23452.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 700

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/727 (22%), Positives = 306/727 (42%), Gaps = 77/727 (10%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P + ++    ++   ++E      K  +    + +  +       +  E     L+    
Sbjct: 7   PKWIQLNNEIMI---QKEGKFQFDKDKEAVHSYFVDYINQNTVFFHNLEEKIDYLIENDY 63

Query: 274 MDFDL--VYLANDLK------YERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFM 322
            + +    Y   D+K      Y + F F  ++     Y+ Y L  N     +E  +    
Sbjct: 64  YEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRIS 123

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
            VA+  A  + EK   A+EF  L+ +  +  STPT  N+G  R  +L SCFL  V D L 
Sbjct: 124 VVALFFAGGDKEK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLN 180

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q 
Sbjct: 181 DISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQM 240

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++     
Sbjct: 241 GQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYT 300

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P  V   +  +  E ++  E Y+   +  +I    K++   L  K+  +  E+G+P+I
Sbjct: 301 FYPHTVYKEYGQHLDEMDME-EMYDELVENPKI-KKEKVNPRKLLEKLAVLRSESGYPYI 358

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLA 609
            F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N++ 
Sbjct: 359 MFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMN 418

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              N       +  T++ A   L  V +          +K+N   ++IGLG M     L 
Sbjct: 419 VMKNKS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLA 473

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
              + Y S EA + A+     +++++I  S ELA+E+   +  ++GS +  G +    + 
Sbjct: 474 QNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVE 533

Query: 728 LLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                + E A      M+  ++  W  LK  V   GM +S  + IAPT +I+ +   + S
Sbjct: 534 NDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATAS 593

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P  + +  ++  +         L                       S  N        
Sbjct: 594 VMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQNW------- 623

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTT 900
              +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT 
Sbjct: 624 -FFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTL 682

Query: 901 YYLRSRS 907
           YY R++ 
Sbjct: 683 YYARTKD 689


>gi|15675307|ref|NP_269481.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910936|ref|YP_282486.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13622485|gb|AAK34202.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes M1 GAS]
 gi|71853718|gb|AAZ51741.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 719

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 288/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFSAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEF-ITELDSIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYLDITNMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 329 VANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+T  R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIKTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN------RTSRLPWD 747
           +  S  +A+ER   +  F+ S +  G +    +      + +L  +            W+
Sbjct: 500 LVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQASDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   + +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|225868772|ref|YP_002744720.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702048|emb|CAW99656.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 719

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/712 (23%), Positives = 285/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  +     +F + +LA  ++ E 
Sbjct: 32  KEALEAFFAENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEF-ISHLAKSIEAE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E  A +    + +
Sbjct: 90  GFRFKSFMAAYKFYQQYALKTNDGNFYL-ESIEDRVLFNALYFADGDEALAKDLAIEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  V   + L     +I     E 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARHNDDMYLFSPYSVEKEYGLPFNYIDITSMYDEL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+        KI A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 329 VANPNI--TKTKIKARDLETEISKLQQESGYPYVINIDTANRSN--PIDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    +  F       +I+   R L  V
Sbjct: 385 ILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSPDF-----GRSIKAMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  
Sbjct: 440 TDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           +  S ++A+ER   +  F+ S +  G +    I      + EL               W 
Sbjct: 500 LVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQAADWK 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++ V   G+ + N +A+AP  +I+ I   S SI P  Q +  +               
Sbjct: 560 ALRQAVMIDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ-------------- 605

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  I  + Y    + + + IP      + +A+++D   +I+  +   K +
Sbjct: 606 ----------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATKHV 649

Query: 868 DQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L+                + + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|157955347|gb|ABW06054.1| NrdE [Bacillus thuringiensis serovar alesti]
          Length = 694

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/714 (23%), Positives = 304/714 (42%), Gaps = 70/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+   GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I   S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 486 FMMLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +   
Sbjct: 546 IPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATT 605

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L  +      W                            + ++++++   LI+ 
Sbjct: 606 YYPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDL 634

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 635 IAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|219682806|ref|YP_002469189.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219620456|gb|ACL28613.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178105|gb|ADC85351.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 708

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/759 (23%), Positives = 293/759 (38%), Gaps = 113/759 (14%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  + A   +  L  E     + K              E    ++ E V  R++     
Sbjct: 4   DYHSLNA---MLNLYDEDGNIQFDKDH------------EAVDAFLAEHVAPRMIRFEST 48

Query: 275 DFDLVYLANDLKYERD---------------------FAF-EYLGLQILYDRYFLHINGS 312
              L YL +   YE D                       F  +LG    Y  Y L     
Sbjct: 49  RERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYALKTFDG 108

Query: 313 --RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
              +E        V++ LA  +   E  A+   + +    F  +TPT  N G  +  +  
Sbjct: 109 EHYLEDFPQRAAAVSLALADGD---EPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEPV 165

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GV+P +K
Sbjct: 166 SCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVMK 225

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   +     IPD+ 
Sbjct: 226 LLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDIT 285

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +     LFSP +V  ++ +   +  +  +  E  AD    K F  I A   +  +
Sbjct: 286 FELAKRREKMALFSPYDVERVYGVPFADVNVTAKYEEMLADDRIRKTF--IDAREFFTTL 343

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
             + FE+G+P++ F+D  N  +     G +  SNLC+EI                     
Sbjct: 344 AEIQFESGYPYLLFEDTANAAN--PIDGRITMSNLCSEILQVQEPSTYYEDLSYAHVGRD 401

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+             LA  + TA+R L  V        +    ++N    AI
Sbjct: 402 VSCNLGSLNIARAMDAG------LAGPVETAIRALTAVSQHTHIGAVPSIARANEEGHAI 455

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +   E ++FHA  AS  LA E   A++ F  S 
Sbjct: 456 GLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFADSA 515

Query: 716 WDQ----GVFPIDSI----------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           + +    G +    +          G +  + +   +   +   W EL+  +   G+ N 
Sbjct: 516 YARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRIPTARDWRELQGEILRDGIYNQ 575

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              A+ PT +I+ I   + SI P    + ++                         E  I
Sbjct: 576 YLQAVPPTGSISYINHATSSIHPIASKIEIRK------------------------EGKI 611

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEP 880
             + Y          + +D   ++  A+EI    ++++ +     +DQ  SL L + D  
Sbjct: 612 GRMYYPA------PYMTNDNLDLYDDAYEIGWKAIVDTYAEATPHVDQGLSLTLFFPDTV 665

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + + L+     AW  G+KT YY+R R   ++E + + G 
Sbjct: 666 TTRDLNKAQIYAWRKGIKTLYYIRIRQ-QALEGTEVAGC 703


>gi|321315507|ref|YP_004207794.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
 gi|291484286|dbj|BAI85361.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021781|gb|ADV96767.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
          Length = 700

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/726 (22%), Positives = 305/726 (42%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  E     +E     
Sbjct: 7   PKWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYE 65

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
                     D+  +     Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 66  EEFLSLYSFEDIKEVFKT-AYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  +TEK   A E+ NL+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDTEK---AKEYVNLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++  E Y++  D   +    KI+   L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDM-NEMYDKFVDNPRV-KKEKINPRKLLEKLAMLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  ++  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S E+A+E+   +  ++GS +  G +    +  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVST 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E        M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 DFSPKYEKIANLFEGMHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ IDQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|89070843|ref|ZP_01158088.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
 gi|89043581|gb|EAR49790.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
          Length = 761

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/662 (23%), Positives = 267/662 (40%), Gaps = 86/662 (12%)

Query: 299 QILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ ++   +  + R+A  LA  E +      +FY  L  F F+ +  
Sbjct: 11  QIWDMKYRLKDADGTPVDTDVEGTWRRIARALASVEADPAAWEPKFYAALEDFRFLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTDRSVTLFNCFVMGTVPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAPV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE+F++ +     D  
Sbjct: 131 AGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIEAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +A W L            +G E                 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADADWEL-----------TFGGE----------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            VFR + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VFRTVRARELWDRIMRSTYDYAEPGVIFIDRINEMNNLAYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    A         D   L   + TAVR++DNV+D +   + +  + 
Sbjct: 276 --YGACLLGSINLARLVAEPFAEGASLDEAALDELVATAVRMMDNVVDASRFPLPQQAEE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++   Y S EA  + +  M+ I+  A  AS +LA E+GA+ 
Sbjct: 334 ARNKRRIGLGVTGLADALLMVGQRYGSEEAAALTEAWMKRIARAAYLASADLAAEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+   +                   LA    +++  D+++  +   G+RN+   ++APT
Sbjct: 394 LFQAEPY-------------------LASGTMAQMD-DDVRAAIAEKGIRNALLTSVAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  LW E          
Sbjct: 434 GTISLYAGNVSSGIEPVFAFAYNRKVLQKDGSRTEEEVVDYAVQ--LWRETRGD------ 485

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + PM  +   +  QKW+D + S  + +      +    
Sbjct: 486 ----------AELPAHFVNAQTLAPMDHVRMQAAAQKWVDSSISKTINVPADIDFESFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +Y +A+  G K     R    T    S  +       A  V    ++   + +       
Sbjct: 536 VYMEAYETGCKGCTTYRPNDVTGSVLSVSEEKKEAPAAPEVVSDENAGEVIYMTEPLDRP 595

Query: 948 TE 949
             
Sbjct: 596 QT 597


>gi|157825768|ref|YP_001493488.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           akari str. Hartford]
 gi|157799726|gb|ABV74980.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           akari str. Hartford]
          Length = 607

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 211/670 (31%), Positives = 308/670 (45%), Gaps = 97/670 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G  IL DRY +       E  Q  F RV+   A    E ++ A + Y  +S   FM +T
Sbjct: 24  FGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPAT 74

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I 
Sbjct: 75  PILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGIR 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
              G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R
Sbjct: 135 D-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNR 193

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++    I D FMK V  N  + L SP                              
Sbjct: 194 KALNIHHGIAITDEFMKAVENNTDFDLISPATKK-------------------------- 227

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLN 591
            V  KI A  LW K+LT   ETG P++ F D  N       ++    V  SNLC+EITL 
Sbjct: 228 -VVNKIRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLP 286

Query: 592 SSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +  +      TAVC L S+NL  ++   + D + + S +     VL++ I+   +T+ +A
Sbjct: 287 TGIDHLGKSRTAVCCLASLNL-EYYEEWKDDKEFIYSIMLFLDNVLEDFINKAPNTMARA 345

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQIKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                             A++  S                R SN  AI
Sbjct: 406 ACPD--------------------------ALDAGSNE--------------RFSNKTAI 425

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK- 884
            H+GS+ ++  + +  K++  TA+EID  WLIE AS R  +I QAQSLN+++     KK 
Sbjct: 486 THEGSVQHLTFLSEAEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFVPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           L+ I+ +AW  G+K+ YY RS S    +K     V   +      D       L      
Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADK-----VSHDILKADFKDLEKQNDKLTEAG-- 598

Query: 945 TSDTECEVCQ 954
            +  EC  CQ
Sbjct: 599 -NYEECLSCQ 607


>gi|291295356|ref|YP_003506754.1| ribonucleoside-diphosphate reductase subunit alpha [Meiothermus
           ruber DSM 1279]
 gi|290470315|gb|ADD27734.1| ribonucleoside-diphosphate reductase, alpha subunit [Meiothermus
           ruber DSM 1279]
          Length = 691

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/715 (24%), Positives = 303/715 (42%), Gaps = 69/715 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E      ++           L  E F   I+EG             DL+ L  
Sbjct: 18  FQLEKDLEAAQAFEEEVLLRLRRFSDPL--ERFQALIQEGYYEDFFARYEA-ADLLRLYR 74

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRV-AMGLALKETEKEKRAVE 341
            L     F F+ ++ +   Y  Y L  +  ++ + + +F RV A+ L L + + +K A  
Sbjct: 75  -LAESYPFRFQSFMAVSKFYKDYALKSDDKKLYL-ERYFERVLAVALHLGQGDVQK-AEA 131

Query: 342 FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +   +    +  +TPT  N+G  R  +L SCFL  + D L  I   L     L+K  GG+
Sbjct: 132 YVRAMMEQRYQPATPTFLNAGRARRGELVSCFLLELDDSLNSIGYNLNAAMQLSKIGGGV 191

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G    ++GV+P  K+  D     +Q G+RKGA   YL  +H DVE
Sbjct: 192 ALNLSKLRARGEPIKGVAHAAKGVVPVAKLLEDAFNYADQMGQRKGAGAVYLNIFHWDVE 251

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D++ R   ++    +P  F         + +F+P  V      +  + + 
Sbjct: 252 EFLDTKKINADEKSRLQTLSLGLLVPQKFFDLAEAGEDFYVFAPYSVYRAFGEHLDDMD- 310

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
               YE      E+   R +SA  +  ++    FE+G+P+I ++   N + P + +G + 
Sbjct: 311 LDRMYEALVAHPEV-KKRPLSARQMLTRIAQTQFESGYPYIVYRSNANRQHPLKALGQIK 369

Query: 581 SSNLCTEITLNSSS------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLCTEI    +                  CNLGS+N++     N  +   LA ++ TA
Sbjct: 370 MSNLCTEIFQLQTPTLVGDAGEVVEAGFDISCNLGSLNIV-----NVMEQQNLAESVHTA 424

Query: 629 VRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D +    +    ++N    ++GLG+M     L    I Y S EA +      
Sbjct: 425 MDALTAVSDASAVRQVPGVWRANQAFHSVGLGVMNLHGFLAKNQIRYESEEARDFVRSFF 484

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQG----VFPIDSIGLLAEVRDEL-AMNRT 741
             ++++++  S+E+A+ER   +  F+ S +  G     +  D       VR     +   
Sbjct: 485 AAMNYYSLERSMEIARERGQTFHGFEQSEYASGRYFEKYQEDFRPRTETVRKLFEGIPLP 544

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W  LK+ V+  G+ ++  +A+APTA+I+ I   + SI P  +++  ++  +     
Sbjct: 545 SPADWARLKEAVEQHGLYHAYRLAVAPTASISYIQNATPSIQPIVEHVETRTYGNATTYY 604

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              FL  E                                   + +A+ ++   +I+  +
Sbjct: 605 PMPFLSEE-------------------------------TYWFYKSAYHMNMYRVIDLVA 633

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             Q+ +DQ  S  L+   E S ++L  +Y  A   GLK+ YY R+++ +  E  T
Sbjct: 634 EAQQHVDQGISTVLFVTSETSTRELARLYVYAAKKGLKSLYYTRTKNLSVEECLT 688


>gi|227431270|ref|ZP_03913324.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353032|gb|EEJ43204.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 723

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/715 (23%), Positives = 292/715 (40%), Gaps = 84/715 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +           L       +    ++   + +  + F +  L   L  E  
Sbjct: 35  EALNAFLDENVLPNVMHFDSLQERLDWMFDHRFLEREFIQKYNLTF-IEKLYTYLAGEH- 92

Query: 291 FAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  ++     Y++Y L  N     IE  +    RVAM         E  A+   + + 
Sbjct: 93  FKFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMI 149

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA + G +  + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +
Sbjct: 210 VREAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F   V QN    LFSPD+V  ++       +I  E Y+
Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQPFNYVDITAE-YD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +I+  ++I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+
Sbjct: 329 NMVANDKIRK-QRIDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCS 385

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGSIN++     N F       ++ T VR L  
Sbjct: 386 EILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVNMMNTNDF-----GGSVDTMVRALTF 440

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  N   +      N    AIGLG MG  +      + Y   E+++        ++++
Sbjct: 441 VSDSSNLDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTSTFFMMLNYY 500

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
           +I +S+ +A+E    +  F  S +  G +    +      + E         +  +   W
Sbjct: 501 SIKSSMGIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVPTEQDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +LK+ V   GM N+   AIAPT +I+ +   + S+ P    +  +              
Sbjct: 561 AQLKEDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQ------------- 607

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E MI  + Y    + N      +    + +A++ D   +I+  +  Q+ 
Sbjct: 608 -----------EGMIGKVYYPAPGLSN------ETMPYYVSAYDTDMRRVIDVYAAAQEH 650

Query: 867 IDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ  +L L++                ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 651 IDQGMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT 705


>gi|83319418|ref|YP_424095.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283304|gb|ABC01236.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 720

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/747 (23%), Positives = 312/747 (41%), Gaps = 73/747 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 10  LDDVDDEYIKLNARSKIFSKDQDNFQLDIKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 69

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + +L++    FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 70  QYYDSEILNK--YSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 126

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A      +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 127 TDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 186

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 187 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 246

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 247 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 306

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  ++     +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 307 ALFSPYDVQKVYGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYP 364

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 365 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNI 424

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +  +     KK N  + A+GLG M     
Sbjct: 425 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGAMNLHGF 480

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G +     
Sbjct: 481 LATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYT 540

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W EL + +K  G+ NS+ MA+APT +I+ +
Sbjct: 541 KCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIELVEEIKKTGLANSHLMAVAPTGSISYL 600

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 601 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 634

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++      A+E+ P  +I   +  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 635 ---DNMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFK 691

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDG 921
            G  + YY+R R    +E S     D 
Sbjct: 692 QGCSSIYYVRIRQ-DVLEDSENYECDA 717


>gi|16078801|ref|NP_389620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309617|ref|ZP_03591464.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313940|ref|ZP_03595745.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318863|ref|ZP_03600157.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323135|ref|ZP_03604429.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|1710384|sp|P50620|RIR1_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1154632|emb|CAA92810.1| NrdE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634122|emb|CAB13622.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 700

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/726 (22%), Positives = 305/726 (42%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  E     +E     
Sbjct: 7   PKWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVFFHNL-KEKLDYLVENQYYE 65

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
                     D+  +     Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 66  EEFLSLYSFEDIKEVFKT-AYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  +TEK   A E+ NL+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDTEK---AKEYVNLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++  E Y++  D   +    KI+   L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDM-NEMYDKFVDNPRV-KKEKINPRKLLEKLAMLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  ++  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S E+A+E+   +  ++GS +  G +    +  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYVST 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E        M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 DFSPKYEKIANLFEGMHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ IDQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|50365345|ref|YP_053770.1| ribonucleotide-diphosphate reductase subunit alpha [Mesoplasma
           florum L1]
 gi|50363901|gb|AAT75886.1| ribonucleoside-diphosphate reductase alpha chain [Mesoplasma florum
           L1]
          Length = 721

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/740 (22%), Positives = 296/740 (40%), Gaps = 73/740 (9%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             + +  +  ++R  I        + A     KL  +     Y K              E
Sbjct: 12  TDESDEYVTLNARAKI--------LAAGSDNFKLDVDAA-KAYLKHHVEPRLVKFGSVKE 62

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR 313
                +  G     L        +  +  D+ Y     F  ++G    Y+ Y L     +
Sbjct: 63  RIEYLVSNGYYEEELINKYTIEQIEEI-TDIAYGFHREFPSFMGAMKFYNSYGLKTFDGQ 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF 372
             + + F  R  M          + A +    L    F  +TPT  N+G  +  +  SC+
Sbjct: 122 KYL-ENFEDRAVMNALFLGNGNFESATKTLRQLMLGRFQPATPTFLNAGKKQRGEYVSCY 180

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D++  I  A+  +  L+K  GG+    T +R LGA I     ++ GVIP +K+  
Sbjct: 181 LLRVEDNMESICRAVTTSLQLSKRGGGVALCLTNLRELGAPIKQIANQATGVIPVMKILE 240

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H DV  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 241 DSFSYANQLGQRQGAGAVYLNAHHPDVMSFLDTKRENADEKIRIKSLSLGLVIPDITFEL 300

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +N    LFSP +V   +     +  I  E Y+             I+A   +  +  +
Sbjct: 301 AQKNEEMALFSPYDVEREYGKAMSDISITQE-YQNLVKNP-NIKKTYINARKFFLTVAEL 358

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVC 600
            FE+G+P+I F D  N  +     G +  SNLC+EI   S+              +   C
Sbjct: 359 HFESGYPYILFDDTVNNNNAHAATGRIVMSNLCSEIAQVSTPSTFNDDLSFKSMGDDICC 418

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLG 659
           NLGS+N+     +      + A  I  ++  LD V   +   +    ++ N  + A+GLG
Sbjct: 419 NLGSLNIAKVMESGA----EFAEVIEHSINALDLVSRTSDLSSAPSIQQGNKKNHAVGLG 474

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            M     L    I Y S EAV+  +     ++++A  AS +LA + G +  F+ S +  G
Sbjct: 475 AMNLHGFLATNFIWYNSIEAVDFTNMFFYAMAYNAFKASHKLALQYGTFDGFETSQFADG 534

Query: 720 VFPIDSIG-----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +                  + E+  +  +   ++  W EL + +K  G+ NS+ MA+AP
Sbjct: 535 SWFNKYTKCAEDKWTPETQRVRELFAQYNVTIPTQKDWIELVELIKKDGIANSHLMAVAP 594

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    + V+         V ++ +N                    
Sbjct: 595 TGSISYLSSCTPSLQPVVAPIEVRKEGKLGRIYVPAYNINF------------------- 635

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                     D++      A+E+ PM +I+  +  Q+ +DQA SL L++ D+ + + L+ 
Sbjct: 636 ----------DNMAYYALGAYEVGPMPIIDIVAAAQQHVDQAISLTLFMTDQVTTRDLNK 685

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
            Y  A+     + YY+R R 
Sbjct: 686 AYIHAFKKKCASIYYVRVRQ 705


>gi|224826411|ref|ZP_03699513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
 gi|224601512|gb|EEG07693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
          Length = 949

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/664 (24%), Positives = 282/664 (42%), Gaps = 80/664 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           ++L ++Y      S          RVA  LA  E E  +    F++ L    F+      
Sbjct: 17  EVLLEKYAKGDEQSVA----DVRRRVARALAGIEAEPARYEAAFFDALQRG-FIPGGRIN 71

Query: 359 FNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +GT     L +CF+  V D +        GI+ AL + A   +  GG+G +++ +R  
Sbjct: 72  SAAGTELKATLINCFVQPVGDAVSESEGGKVGIYEALLQAAETMRRGGGVGYNFSRIRPK 131

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + GT+ ++ G + +++V + +   V   G R+GA    L   H DVE+F+  +    
Sbjct: 132 GARVKGTHSRASGPVSYMRVFDRSCETVESAGSRRGAQMGVLNIEHPDVEDFIHAK---- 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+    + N +  + D FM+ V  +  W L     V    D + + F            
Sbjct: 188 -DQGDLKNFNISVGVSDAFMQAVEADGPWQLV--HAVEPASDAFPEAFRR---------- 234

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              + V+R + A  LWR+++   ++   P + F    N  +   +  V+ S+N C E  L
Sbjct: 235 DDGLWVYRTVRARELWRQIMESTYDHAEPGVLFLSQINRDNNLSYCEVIESTNPCGEQPL 294

Query: 591 NSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                +   C+LGSINL A          +FD+    + +R+A+R+LDNV+D+    + +
Sbjct: 295 P----DYGCCDLGSINLAAFVEHPFTRRARFDFKAFETVVRSAIRMLDNVLDLTVWPLPE 350

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R +GLG  G   AL LL I Y SP+  ++A +  E +   A  ASV+LA E+
Sbjct: 351 QQREAQAKRRVGLGFTGLGDALILLQIAYNSPQGRQMAAKFAETMRDAAYDASVDLAIEK 410

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F            D+   LAE       +  SRLP + +K R++  G+RNS+ ++
Sbjct: 411 GAFPLF------------DADNYLAEP------HCASRLP-EAIKARIRQHGIRNSHLLS 451

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+       S  I+P +   Y +     D +    + V +   R          
Sbjct: 452 IAPTGTISLAFADNASNGIEPPFSWYYTRKKRMADGSQ-QEYRVEDHAYRLY-------- 502

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-G 882
            + + G +       + L     +A E+  +  ++  +    +ID A S  + +      
Sbjct: 503 -RLNGGDV-------EKLPPYFVSALEMSALDHMQMVAAVAPYIDTAISKTVNVPADYPF 554

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS--ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
            + + +Y +AW  GLK     R  S   + +     +     L A    DP+     +  
Sbjct: 555 DEFEHLYLEAWKAGLKGITTYRPNSVLGSVLSVEPAQAAPQDLLASQEGDPDRRIALVST 614

Query: 941 PSSC 944
           PS  
Sbjct: 615 PSPA 618


>gi|124485031|ref|YP_001029647.1| hypothetical protein Mlab_0204 [Methanocorpusculum labreanum Z]
 gi|124362572|gb|ABN06380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanocorpusculum labreanum Z]
          Length = 736

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 168/641 (26%), Positives = 276/641 (43%), Gaps = 94/641 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           IL  RY+    G      +    RVA  L   ET +E    E+++ + S  F+ ++PTL 
Sbjct: 9   ILAARYYR--TGEA--SFEDVCRRVADAL--GETPEET--KEYFDAMMSLSFLPNSPTLM 60

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF   V D L  IF A++  A++ +  GG G +++ +R  G+ +  T+G
Sbjct: 61  NAGTPLGQLSACFTLPVNDSLPEIFDAIRWGAIIHQSGGGTGYNFSHLRPEGSPVRSTDG 120

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + F++V N     + QGG+R+GA    L  WH D+ +F+  +   GD      + 
Sbjct: 121 VASGPVSFMRVFNAATDVIKQGGRRRGANMGILNVWHPDIMKFIKSKAKEGDFS----NF 176

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM  V +                              E+            
Sbjct: 177 NISVMVSDAFMDLVAKG-----------------------------EKDKVWVTNTDGVG 207

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I+   +W  ++  +++ G P I F D  N ++P  ++G + ++N C E  L         
Sbjct: 208 ITVGEIWEGIIEGVWKNGEPGILFYDTINRKNPTPNLGEIDTTNPCGEQPLLPFES---- 263

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C LGSINL      +  +Y+ L    R  +R LD VI  N   I + + + +  R +GLG
Sbjct: 264 CVLGSINLAKFIRADGLNYEALDKMTRMGIRFLDAVITKNVFPIPEIRDATNRTRKVGLG 323

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-Q 718
           LMG   A+ +L IPY S        E ME I+  A+  SV L +E+G + +++GS+WD Q
Sbjct: 324 LMGVHDAMLMLRIPYDSEAGRNFCIEVMERINNVAVEESVILGKEKGTFPAYEGSVWDKQ 383

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+                                     MRN+    IAPT TI+ + G 
Sbjct: 384 GII------------------------------------MRNAALTTIAPTGTISLLAGC 407

Query: 779 SQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQ-------RDLWDEAMISDLKYH--- 827
           S  I+P +   Y + N  G  F +V+ +  +EL++            EA   ++  H   
Sbjct: 408 SSGIEPVFSFAYTRRNTVGKTFVMVHPYFESELRRVITAMGLTGAEAEAKRDEVINHVHE 467

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            GS+ +I  +PD  K +  TA +I     +   +  QK +  + S  + +    + + ++
Sbjct: 468 TGSVQDIAWLPDTFKAVFKTALDIGWKDHVLMQAAFQKHVHASISKTINMPVTATKEDVE 527

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
                AW  G+K     R+ S   V  +  K     + A P
Sbjct: 528 KAVILAWREGIKGMTLYRTGSREDVVLALEKQEIKPVEASP 568


>gi|255003305|ref|ZP_05278269.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Puerto Rico]
 gi|255004431|ref|ZP_05279232.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Virginia]
          Length = 595

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 196/677 (28%), Positives = 301/677 (44%), Gaps = 102/677 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 10  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVS----QYYSDNDEHAQRLYDYMSK 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 61  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  + GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 121 SIGEKVRSS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179

Query: 469 TG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD--------------------- 218

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
                   V   + A  LW K+LT   ETG P++ F D  N   P  +      V  SNL
Sbjct: 219 ------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272

Query: 585 CTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           CTEITL +  +      TA+C L S+NL  ++     +   +   +R    VL + I+  
Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL-EYYDMWSTEPMFIEDVMRFLDNVLTDFINKA 331

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A   S 
Sbjct: 332 PPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADEVSH 391

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+G                           D +  N+                  R
Sbjct: 392 KLALEKGPCP------------------------DAIDANKME----------------R 411

Query: 760 NSNCMAIAPTA-TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             + ++IAPTA         S  I+P   N++    ++G F V N FL   L+ + L ++
Sbjct: 412 FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGLDND 471

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N++L 
Sbjct: 472 QVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNIFLP 531

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               K+ L  I+  AW  G+K+ YYLRS+S    +         K++ V V    S    
Sbjct: 532 AGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKAD---------KVSHVHVGQAVSPQRQ 582

Query: 938 LGIPSSCTSDTECEVCQ 954
           +          EC  CQ
Sbjct: 583 ITN----FDYDECLACQ 595


>gi|56416956|ref|YP_154030.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. St. Maries]
 gi|222475322|ref|YP_002563739.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
 gi|56388188|gb|AAV86775.1| ribonuclease-diphosphate reductase alpha chain [Anaplasma marginale
           str. St. Maries]
 gi|222419460|gb|ACM49483.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
          Length = 606

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 196/677 (28%), Positives = 301/677 (44%), Gaps = 102/677 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 21  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVS----QYYSDNDEHAQRLYDYMSK 71

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 72  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 131

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  + GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 132 SIGEKVRSS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 190

Query: 469 TG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 191 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD--------------------- 229

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
                   V   + A  LW K+LT   ETG P++ F D  N   P  +      V  SNL
Sbjct: 230 ------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 283

Query: 585 CTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           CTEITL +  +      TA+C L S+NL  ++     +   +   +R    VL + I+  
Sbjct: 284 CTEITLATGEDHLGKSRTAICCLASLNL-EYYDMWSTEPMFIEDVMRFLDNVLTDFINKA 342

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A   S 
Sbjct: 343 PPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADEVSH 402

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+G                           D +  N+                  R
Sbjct: 403 KLALEKGPCP------------------------DAIDANKME----------------R 422

Query: 760 NSNCMAIAPTA-TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             + ++IAPTA         S  I+P   N++    ++G F V N FL   L+ + L ++
Sbjct: 423 FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGLDND 482

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N++L 
Sbjct: 483 QVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNIFLP 542

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               K+ L  I+  AW  G+K+ YYLRS+S    +         K++ V V    S    
Sbjct: 543 AGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKAD---------KVSHVHVGQAVSPQRQ 593

Query: 938 LGIPSSCTSDTECEVCQ 954
           +          EC  CQ
Sbjct: 594 ITN----FDYDECLACQ 606


>gi|226940518|ref|YP_002795592.1| NrdE [Laribacter hongkongensis HLHK9]
 gi|226715444|gb|ACO74582.1| NrdE [Laribacter hongkongensis HLHK9]
          Length = 947

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/667 (24%), Positives = 270/667 (40%), Gaps = 78/667 (11%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           + +  ++L ++Y      +          RVA  LA +E E  + A  FY  +    F+ 
Sbjct: 12  QEISREVLLEKYAKGDEQNVA----DVRRRVAAALAGQEQEPSRHAESFYWAMEQG-FIP 66

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWT 405
                  +GT     L +CF+  V D +        GI+ AL + A   +  GG+G ++T
Sbjct: 67  GGRINSAAGTELSATLINCFVQPVGDSVSETRDGKVGIYEALLQAAETMRRGGGVGYNFT 126

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GTN ++ G + +++V + +   V   G R+GA    L+  H D+E F+  
Sbjct: 127 RIRPKGARVKGTNSRASGPVSYMRVFDRSCETVESAGARRGAQMGVLDCDHPDIESFIHA 186

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D     + N +  + D FM+ V  +  W L   +E         KEF  A +  
Sbjct: 187 K-----DAGDLRNFNISVGVSDAFMQAVEADGSWELVHKEEPDR------KEFPDACQRA 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           + +       V+R + A  LW +++   ++   P + F    N  +   +  V+ S+N C
Sbjct: 236 DGK------WVYRAVRARDLWNQIMESTYDHAEPGVLFMSKINRDNNLSYCEVIESTNPC 289

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC 640
            E  L     +   C+LGSINL     +       FD+      +R +VR+LDNV+D+  
Sbjct: 290 GEQPLP----DYGCCDLGSINLTRFVRDPFTAKAGFDFATFDKVVRQSVRMLDNVLDLTV 345

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + + ++   + R IGLG  G   AL +L I Y+S      A    E +   A  ASV+
Sbjct: 346 WPLPEQQREAQSKRRIGLGFTGLGDALIMLTIKYSSDAGRAFAARVSEAMRNSAYDASVD 405

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA E+GA+  F    +                      +  SRLP  E+K R+K  G+RN
Sbjct: 406 LAIEKGAFPLFDADQY------------------LAEPHCASRLP-KEIKARIKKHGIRN 446

Query: 761 SNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           S+ ++IAPT TI+       S  I+P +   Y +     D T    + V +   R     
Sbjct: 447 SHLLSIAPTGTISLAFADNASNGIEPPFSWFYTRKKRMADGTQ-QEYRVEDHAYRVY--- 502

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                 +   G + +       L     +A E+  +  +   +    +ID A S  + + 
Sbjct: 503 ------RELGGDVSS-------LPDYFVSALEMSALDHMSMVAAVAPFIDTAISKTVNVP 549

Query: 879 EPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
                   + +Y +AW  GLK     R  S      S     +   +  P  DP+     
Sbjct: 550 ADYPFADFESLYIEAWRAGLKGITTYRPNSVLGSVLSVEPTRETPADLPPSDDPDRRIAL 609

Query: 938 LGIPSSC 944
              P   
Sbjct: 610 NKTPEPA 616


>gi|149914029|ref|ZP_01902561.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812313|gb|EDM72144.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 759

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/665 (22%), Positives = 261/665 (39%), Gaps = 86/665 (12%)

Query: 296 LGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +   I   +Y L   +G+ I+   +  + R+A  LA  E + +    +FY  L  F ++ 
Sbjct: 8   IAQSIWDMKYRLKEADGTPIDQSVEDTWRRIARALAAVEDDPKLWEQKFYAALEDFKYLP 67

Query: 354 STPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +      +GT     L +CF + T+PDD+ GIF  L+E A+  +  GG+G D++ +R  G
Sbjct: 68  AGRITAGAGTGRSVTLFNCFVMGTIPDDMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKG 127

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +      + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     
Sbjct: 128 AEVKSVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKA---- 183

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D  R    N +  + D FM+ V  +  W L                              
Sbjct: 184 DAARLRMFNLSVLVTDDFMEAVKADGPWELEFG--------------------------- 216

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              KV+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L 
Sbjct: 217 --GKVYRTVEARDLWNRIMQATYDYAEPGVIFIDRINAANNLNYCETISATNPCGEQPLP 274

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   C LGSIN+     +        D D L   +  AVR++DNV+D +   +E  
Sbjct: 275 P----YGACLLGSINMARLVTDPFGPEAALDEDALDDLVAVAVRMMDNVVDASRFPLEAQ 330

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +     R IGLG+ G   AL ++ + Y S EAV   +  +  I+  A  ASV+LA+E+G
Sbjct: 331 AREAEAKRRIGLGVTGLADALLMVGLRYGSDEAVAQTEAWLHQIARAAYLASVDLAREKG 390

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  F                           +   R    ++++ +   G+RN+   +I
Sbjct: 391 PFPLFDA--------------------GAFLASGNMRGMDADVREAIAEHGIRNALLTSI 430

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W E       
Sbjct: 431 APTGTISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVDYAVQ--MWREKFGD--- 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884
                         DL      A  + P   ++  +  Q+W+D + S  +      G + 
Sbjct: 486 -------------ADLPDYFVNAQTLAPQDHVKMQAAAQRWVDSSISKTINCPADIGFEA 532

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
              +Y QA+  G K     R    T    S  +  D          P+     + +    
Sbjct: 533 FKDVYMQAYETGCKGCTTYRPNDVTGSVLSVSEASDAAPGEAGAQMPHEGGEIVYMSEPL 592

Query: 945 TSDTE 949
              TE
Sbjct: 593 DRPTE 597


>gi|260432613|ref|ZP_05786584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416441|gb|EEX09700.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 760

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/645 (24%), Positives = 263/645 (40%), Gaps = 89/645 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E +      +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKKADGTPIDQTVEDTWRRIARDLARVEKDPAHWEQKFYEALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           HG    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 HGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +A W L                               + 
Sbjct: 187 RLRMFNMSVLVTDAFMEAVKADASWDLVF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW K++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 KVYHTVQARDLWNKIMQATYDYAEPGVIFIDRINQANNLSYAETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    +       Q D   L   + TAVR++DNV+D +   + +    
Sbjct: 276 --YGACLLGSINLARLVSAPFEDAAQLDEAALQELVATAVRMMDNVVDASKFPLPQQAAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    +  +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                           D++++ ++  G+RN+   +IAP
Sbjct: 394 LFDAEKYLASGTMQQ---------------------MDDDVREAIREHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W +         
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWRDKF------- 483

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
            G +        +L      A  + P   ++  +  QKWID + S  +   E  S     
Sbjct: 484 -GDV--------ELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDAFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            +Y QAW  G K     R    T     T+   D K+       P
Sbjct: 535 DVYMQAWDQGCKGCTTYRPNDVTGSVL-TVSESDDKVPGESADAP 578


>gi|126737397|ref|ZP_01753132.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
 gi|126721982|gb|EBA18685.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
          Length = 765

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 163/653 (24%), Positives = 270/653 (41%), Gaps = 85/653 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E + E    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDVTVEDSWRRIARDLARAEQDPEAWEGKFYEALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                                 
Sbjct: 187 RLRMFNMSVLVTDDFMEAVKADGSWELQFG-----------------------------G 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYHTVEARDLWNKIMQATYDFAEPGVIFIDRINKANNLSYVEDICATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+          N   + + +   + TAVR++DNV+D++   +E   + 
Sbjct: 276 --YGACLLGSINMARLVSNPFEKNAGLNQEAMQELVATAVRMMDNVVDVSKFPLEAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+ 
Sbjct: 334 AQNKRRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHGIARAAYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA      +  +++++ ++T G+RN+   +IAPT
Sbjct: 394 LFDADAY-------------------LASGNMLNMD-EDVREAIRTHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  ++ E   +D K   
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK--- 488

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                       L      A  + P   ++  +  QKWID + S  +   E  S      
Sbjct: 489 ------------LPGFFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKD 536

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +Y QAW  G K     R    T    +  +  D           +S + + G 
Sbjct: 537 VYMQAWDQGCKGCTTYRPNDVTGSVLTVSENADTAPGETAQAPHDSGSDANGA 589


>gi|157692409|ref|YP_001486871.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pumilus SAFR-032]
 gi|157681167|gb|ABV62311.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus
           pumilus SAFR-032]
          Length = 700

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/727 (22%), Positives = 305/727 (41%), Gaps = 77/727 (10%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P + ++    ++   ++E      K  +    + +  +       +  E     L+    
Sbjct: 7   PKWIQLNNEIMI---QKEGKFQFDKDKEAVHSYFVDYINQNTVFFHNLEEKIDYLIENDY 63

Query: 274 MDFDL--VYLANDLK------YERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFM 322
            + +    Y   D+K      Y + F F  ++     Y+ Y L  N     +E  +    
Sbjct: 64  YEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRIS 123

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLY 381
            VA+  A  +  K   A+EF  L+ +  +  STPT  N+G  R  +L SCFL  V D L 
Sbjct: 124 VVALFFAGGDKAK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLN 180

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q 
Sbjct: 181 DISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQM 240

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++     
Sbjct: 241 GQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKTAYT 300

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P  V   +  +  E ++  E Y+   +  ++    K++   L  K+  +  E+G+P+I
Sbjct: 301 FYPHTVYKEYGQHLDEMDME-EMYDELVENPKV-KKEKVNPRKLLEKLAVLRSESGYPYI 358

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLA 609
            F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N++ 
Sbjct: 359 MFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGLDISCNLGSLNIMN 418

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              N       +  T++ A   L  V +          +K+N   ++IGLG M     L 
Sbjct: 419 VMKNKS-----IEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGAMNLHGYLA 473

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
              + Y S EA + A+     +++++I  S ELA+E+   +  ++GS +  G +    + 
Sbjct: 474 QNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATGEYFNKYVE 533

Query: 728 LLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                + E A      M+  ++  W  LK  V   GM +S  + IAPT +I+ +   + S
Sbjct: 534 NDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSISYVQSATAS 593

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P  + +  ++  +         L                       S  N        
Sbjct: 594 VMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQNW------- 623

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTT 900
              +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT 
Sbjct: 624 -FFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTL 682

Query: 901 YYLRSRS 907
           YY R++ 
Sbjct: 683 YYARTKD 689


>gi|54026278|ref|YP_120520.1| ribonucleotide-diphosphate reductase subunit alpha [Nocardia
            farcinica IFM 10152]
 gi|54017786|dbj|BAD59156.1| putative ribonucleoside-diphosphate reductase alpha subunit [Nocardia
            farcinica IFM 10152]
          Length = 1102

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/574 (26%), Positives = 246/574 (42%), Gaps = 63/574 (10%)

Query: 369  SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             +CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 564  HNCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIM 623

Query: 429  KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 624  KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 683

Query: 489  FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
              +   +N    LFSP +V  ++     + ++  E Y    D   I+  + I A   ++ 
Sbjct: 684  TFELAKKNEDMYLFSPYDVERIYGKPFADIDVT-EKYYEMVDDKRIRKSK-IKAREFFQT 741

Query: 549  MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
            +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S+  E            
Sbjct: 742  IAELQFESGYPYIMFEDTVNRAN--PIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 799

Query: 597  TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
               CNLGS+N+         D    A TI  A+R L  V D     ++   ++ N    A
Sbjct: 800  DISCNLGSLNIA-----KAMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNQQSHA 854

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
            IGLG M     L    I Y S E ++  +     + +HA+ AS  LA ERG  +  F  S
Sbjct: 855  IGLGQMNLHGYLARERIHYGSDEGIDFTNMYFYTVVYHALRASNRLAIERGTYFGGFPES 914

Query: 715  LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  G +       + E + E          +   ++  W ELK  V   G+ N N  A+
Sbjct: 915  KYASGEYFDKYTEQVWEPKTERVRQLFADAGVRIPTQDDWRELKASVMEHGIYNQNLQAV 974

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
             PT +I+ I   + SI P    + ++                         E  I  + Y
Sbjct: 975  PPTGSISYINHSTSSIHPVASKIEIRK------------------------EGKIGRVYY 1010

Query: 827  HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                      + +D  + +  A+EI    +I++ +   + +DQ  SL L+  D  + + L
Sbjct: 1011 PA------PYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDL 1064

Query: 886  DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +     AW  G+KT YY+R R    +E + ++G 
Sbjct: 1065 NKAQIYAWRKGIKTLYYIRLRQMA-LEGTEVEGC 1097



 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     +EE      + +       V       Y++ F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLVEENYYEPEVLDRYSRA-FVKSLFQQAYDKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLS 369
           G R    + F  RV M         E+ A +  + +    F  +TPT  NSG  +  +  
Sbjct: 98  GKRY--LERFEDRVCMVALTLAAGDEELARKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCF 372
           SCF
Sbjct: 156 SCF 158


>gi|171779439|ref|ZP_02920403.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282056|gb|EDT47487.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 718

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/715 (22%), Positives = 287/715 (40%), Gaps = 79/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD-LVYLANDLKYE 288
           +E L        K        +  +       + ++  ++     +    V    D  Y 
Sbjct: 26  KEALYEYLNTEIKNNLKSFDNIDAKLNYLIAHDYIEESIIDSYGKNSRAFVKELFDFAYN 85

Query: 289 RDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
             F F  ++     Y++Y +  N S+  + + F  R               A +    L 
Sbjct: 86  YGFEFKSFMAAYKFYNQYAMKTNDSKYYL-ENFEDRAVFNALYLANGDRNLAHKILEELI 144

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + + 
Sbjct: 145 SQRYQPATPTFLNAGKKRRGEMVSCFLIDIEDSMLSIGRNINSALQLSRIGGGVGVNLSN 204

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EFL  +
Sbjct: 205 LRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLSTK 264

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E Y+
Sbjct: 265 KENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFNPYHVERVYGIPFSYVDLTKE-YD 323

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              D  EI+    I+A  L +++  +  E+G+P+I   D  N  +     G +  SNLC+
Sbjct: 324 TMVDNDEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTN--PVKGKIIMSNLCS 380

Query: 587 EITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI                       CNLGS+N++    +  F       +I  A+R L  
Sbjct: 381 EILQPQEPSILNPDLSYKKVGTDISCNLGSMNMVNLIKSKDF-----GKSIEYAIRALTT 435

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D      +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++++
Sbjct: 436 VTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNYY 495

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL----LAEVRDELAMNR--TSRLPW 746
           ++ AS ++A E    +  F+ S +  G      +       +E   ++  N    +   W
Sbjct: 496 SLKASHQIAVEKNETFHDFENSRYADGSHFDYYLAKEFHFTSEKVAKIFENILLPTIEDW 555

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +  +              
Sbjct: 556 QLLKEDVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQ------------- 602

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                      E  +  + Y          + +   K + TA+ +D   +I+  ++ Q+ 
Sbjct: 603 -----------EKKVGSIFYPA------PYLSNKTLKYYKTAYNMDQRKIIDIYAKAQQH 645

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ  SL L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 646 IDQGMSLTLFMRSVLPEGIYEWKKQGSSKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|254511074|ref|ZP_05123141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
 gi|221534785|gb|EEE37773.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
          Length = 760

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/645 (24%), Positives = 259/645 (40%), Gaps = 86/645 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E +      +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGTPIDQTVEDSWRRIARDLARVEDDPAHWEEKFYAALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGPWELVF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV++ + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 KVYQTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A         D   L   + TAVR++DNV+D +   + + +  
Sbjct: 276 --YGACLLGSVNLARLVAEPFEDAAHLDEAALQELVATAVRMMDNVVDASKFPLAEQEAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    +  +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQDKRRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F    +                   LA     ++  ++++  ++  G+RN+   +IAPT
Sbjct: 394 LFAAEKY-------------------LASGTMLQMD-EDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  D     
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDKFADK 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + P   ++  +  QKWID + S  +   E  S      
Sbjct: 487 -----------ELPDYFVNAQTLSPSDHVKMQAAAQKWIDSSISKTINCPEDISFDAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           +Y QAW  G K     R    T    +  +  D            
Sbjct: 536 VYMQAWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGESADAPQE 580


>gi|308173698|ref|YP_003920403.1| ribonucleoside-diphosphate reductase major subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606562|emb|CBI42933.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553368|gb|AEB23860.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens TA208]
 gi|328911842|gb|AEB63438.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 700

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/726 (22%), Positives = 303/726 (41%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  +       +  + 
Sbjct: 7   PKWIQLNNEIMIQQDGKFQFDKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIENQYYEE 66

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
             L  S+  F+ +       Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 67  EFL--SLYSFEEIKDVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  + EK   A ++  L+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDAEK---AKDYVRLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++    YE   D   +    K++A  L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDMT-AMYEELVDNPRV-KKEKVNARKLLEKLAVLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      HV  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKEHANNHVSKVKFSNLCSEVLQASQVSAYTDYDEEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N   +  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMKHKSIERTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S ELA+E+   +  ++GS +  G +    I  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAELAKEKGETFEHYEGSTYATGEYFNKYIEK 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                 E        M+  +   W ELK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 EFSPAYEKIAALFEGMHIPTIEDWKELKAFVAENGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ IDQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|291336892|gb|ADD96421.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 431

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/435 (46%), Positives = 287/435 (65%), Gaps = 6/435 (1%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++  + +   +G L   N  ++ +  E AC  L++VS   ++ + +   YD ++  +++ 
Sbjct: 1   MSSNILVKKRNGRLQELNIDKINLCAERACEDLENVSWSEIVLDAHVQFYDKITTKEIDK 60

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           ALI S+R  IEKEPNY+   +R LL  + +EV      K      H++       F + I
Sbjct: 61  ALIMSARQKIEKEPNYSYAASRLLLATIHKEVFGESRDKDVFEEQHKLS------FIKNI 114

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +  VK  +L E ++ FDL  L+  L  +RD  F+YLGLQI+YDRY  H+N  R+E PQ+F
Sbjct: 115 KSLVKEEILDERLLSFDLKMLSEALVTDRDLKFKYLGLQIIYDRYLHHVNERRLETPQSF 174

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +MRVAMGLAL E +K ++A+EFYN LS+F   CSTPTLFNSG+ H QLSSC+L T  D +
Sbjct: 175 WMRVAMGLALNEKDKNEKAIEFYNALSTFSLCCSTPTLFNSGSNHSQLSSCYLNTFDDSI 234

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF  L + A  +KY+GGLG D T  R   +++ GTNGKS G+IP+LK+ NDT +AV+Q
Sbjct: 235 DGIFEGLWQEARKSKYAGGLGFDCTNFRASNSYVKGTNGKSSGLIPWLKIYNDTLIAVDQ 294

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKR GA C+YLE WH+D+E+FL+L+KNTGD+RRR HDMNTANWIPDLF+++V +N  W 
Sbjct: 295 GGKRPGAGCSYLEPWHLDIEDFLELKKNTGDERRRCHDMNTANWIPDLFIRKVQKNEDWY 354

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +  +LH+ YG EF+  Y+ Y + AD G+++ ++ + A  LW+KML +LFETGHPW
Sbjct: 355 LFSPSDTRELHETYGNEFDKIYKKYCKLADSGDLENYKIVKAKDLWKKMLRVLFETGHPW 414

Query: 561 ITFKDPCNIRSPQQH 575
           +T K      +    
Sbjct: 415 MTLKTTLIFATLTPM 429


>gi|26553538|ref|NP_757472.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
 gi|26453544|dbj|BAC43876.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
          Length = 725

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/704 (22%), Positives = 294/704 (41%), Gaps = 67/704 (9%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
            +    +   K    +   +  +    ++E      +  +    F +        Y  +F
Sbjct: 44  AVEKYLETEIKPNFKKFNSIKEKLEYLFLENYYDFNVFKKYSSSFLISIFEKAKTY--NF 101

Query: 292 AFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            F  ++G    Y  Y L    ++    + F  R+     L     E+ A+ + + + +  
Sbjct: 102 RFSSFMGAMKFYTTYALKSFDNKT-YFEHFEDRIVCNALLFGRGNEQDALTYLDEMMTGR 160

Query: 351 FMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TPT  N+G  +  +  SC+L  V D++  I  A      L+K  GG+    T +R 
Sbjct: 161 YQAATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRATTTGLQLSKRGGGVAYCLTNLRE 220

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I G   ++ G+IP +K+  D     NQ G+R+GA   YL  +H D+ +FLD ++  
Sbjct: 221 FGAPIKGIKNQATGIIPVMKILEDVFSYANQLGQRQGAGAVYLNAFHPDILKFLDSKREN 280

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD+      +N    LFSP ++   +     +  I  E YE   
Sbjct: 281 ADEKIRIKSLSLGVVVPDIAFHLARENKDMALFSPYDIQREYGKPMSDISIT-EEYENLL 339

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           +       + ISA  L++++  + FE+G+P+I F D  N ++   +   +  SNLCTEIT
Sbjct: 340 NNP-NITKKYISARKLFQQIAEVQFESGYPFILFDDIANEKNSALNN-RIIMSNLCTEIT 397

Query: 590 LNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
             ++              E   CNLGS+N+     +          T++ A++ LD++  
Sbjct: 398 QINTPSILNTDLTYEQLGEDVCCNLGSLNIAKVMEDGA----NFGKTVKYAIKALDSIAH 453

Query: 638 INCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   +     +  N  +RA+GLG M     L    I Y S EAV+  +     +++HA  
Sbjct: 454 LADLSSAPTIENGNSKNRAVGLGAMNLHGFLATNKIYYDSEEAVDFTNMFFYTMAYHAYK 513

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMNRTSRL 744
           AS E A+E    + +FK + +  G +                  + E+  E  +   ++ 
Sbjct: 514 ASNETAKETGFVFENFKNTKYADGSYFDKYTQCEENYWTPKTERVKELLKEYKLAIPTKQ 573

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P    + ++         V +
Sbjct: 574 DWIQLTEDIKKFGLANSHLMAVAPTGSISYLSSCTPSLQPIVSPIEIRKEGKVGRVYVPA 633

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + ++                                       A+EI    +I+  S  Q
Sbjct: 634 YKIDVNNYM-----------------------------YYAKGAYEIGVNPIIDICSAAQ 664

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + +DQA S+ L+L E  + + L+  Y  A+     + YY+R R 
Sbjct: 665 QHVDQAISMTLFLTENATTRDLNKAYIYAFNKKCVSIYYIRIRQ 708


>gi|254995135|ref|ZP_05277325.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Mississippi]
          Length = 595

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 195/677 (28%), Positives = 301/677 (44%), Gaps = 102/677 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD         +L DRY L       E  Q  F+RV+       ++ ++ A   Y+ +S 
Sbjct: 10  RDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVS----QYYSDNDEHAQRLYDYMSK 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W  +R
Sbjct: 61  LWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYWGNLR 120

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G  +  + GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD+RK 
Sbjct: 121 SIGEKVRSS-GKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLDIRKP 179

Query: 469 TG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           TG D  R+  +++    + D FM+ V Q+  W L SP +                     
Sbjct: 180 TGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD--------------------- 218

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
                   V   + A  +W K+LT   ETG P++ F D  N   P  +      V  SNL
Sbjct: 219 ------KCVISTVRARDMWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVKMSNL 272

Query: 585 CTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           CTEITL +  +      TA+C L S+NL  ++     +   +   +R    VL + I+  
Sbjct: 273 CTEITLATGEDHLGKSRTAICCLASLNL-EYYDMWSTEPMFIEDVMRFLDNVLTDFINKA 331

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A   S 
Sbjct: 332 PPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADEVSH 391

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+G                           D +  N+                  R
Sbjct: 392 KLALEKGPCP------------------------DAIDANKME----------------R 411

Query: 760 NSNCMAIAPTA-TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             + ++IAPTA         S  I+P   N++    ++G F V N FL   L+ + L ++
Sbjct: 412 FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGLDND 471

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N++L 
Sbjct: 472 QVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNIFLP 531

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               K+ L  I+  AW  G+K+ YYLRS+S    +         K++ V V    S    
Sbjct: 532 AGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKAD---------KVSHVHVGQAVSPQRQ 582

Query: 938 LGIPSSCTSDTECEVCQ 954
           +          EC  CQ
Sbjct: 583 ITN----FDYDECLACQ 595


>gi|83943745|ref|ZP_00956203.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
 gi|83954746|ref|ZP_00963457.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83841030|gb|EAP80201.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83845425|gb|EAP83304.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
          Length = 760

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 164/663 (24%), Positives = 267/663 (40%), Gaps = 88/663 (13%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y     +G+  +   +  + R+A  LA  E   EK    FY  L  F F+ +  
Sbjct: 11  QIWDMKYRFKDADGTPRDVTVEDSWRRIARDLAQVEKAPEKWEEAFYEALEDFKFLPAGR 70

Query: 357 TLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT R   L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARRVTLFNCFVMGTVPDSMAGIFDMLKEAAVTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G +  + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 LGVSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM  V  +A W L                                 
Sbjct: 187 RLRMFNMSVLITDPFMDAVKADASWDLQF-----------------------------NG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+R + A  LW +++   +E   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 KVYRTVQARDLWNRIMKATYEFAEPGVIFIDRINEANNLSYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+    +     N Q D + L   + TAVR++DNV+D++   +++ +  
Sbjct: 276 --YGACLLGSINMARMVSDPFGDNPQLDVEALNKLVATAVRMMDNVVDVSKFPLDEQQAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++ + Y S  A E  +  ++ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AKAKRRIGLGVTGLADALLMVGLRYGSDAAAEQTEAWLKAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F+   +   G                           ++++  +   G+RN+   +IAP
Sbjct: 394 LFEADAYLASGTMQQ---------------------MDEDVRDAIAENGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  DLK  
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLK-- 483

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                    +PD        A  + P+  ++  +  QKW+D + S  +   E  S     
Sbjct: 484 -----GDAPLPD----YFVNAQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            +Y  AW  G K     R    T    S  +  D     V           +   S    
Sbjct: 535 DVYMAAWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGEVAAQATAEEGGEVVYMSDPLD 594

Query: 947 DTE 949
             E
Sbjct: 595 RPE 597


>gi|311068262|ref|YP_003973185.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
 gi|310868779|gb|ADP32254.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
          Length = 700

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 166/726 (22%), Positives = 305/726 (42%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  E     +E     
Sbjct: 7   PKWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYE 65

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
                     D+  +     Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 66  EEFLSLYSFADIKEVFKT-AYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  +TEK   A ++  L+ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDTEK---AKDYVRLMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  +   +  +  E ++  E Y++  D   +    KI+A  L  K+  +  E+G+P+I 
Sbjct: 302 YPHTIYKEYGQHMDEMDM-NEMYDKFVDNPRV-KKEKINARKLLEKLAVLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      HV  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNKEHALNHVSKVKFSNLCSEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNIL-- 417

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  ++  +  T++ A   L +V +          +++N   ++IGLG M     L  
Sbjct: 418 ---NVMEHKSIEHTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA + A+     ++F++I  S ELA+E+G  +  ++GS +  G +    +  
Sbjct: 475 NGIAYESPEARDFANTFFMMVNFYSIQRSAELAKEKGATFEQYEGSSYATGEYFDKYVSN 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                 E        M+  +   W +LK  V   GM +S  + IAPT +I+ +   + S+
Sbjct: 535 DFSPAYEKIAALFEGMHIPTIEDWKQLKAFVAEHGMYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +  +  
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLASNNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  +  Q+ IDQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|89053442|ref|YP_508893.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
 gi|88862991|gb|ABD53868.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
          Length = 757

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/654 (23%), Positives = 261/654 (39%), Gaps = 86/654 (13%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ I+   +  + R+A  LA  E +       FY  L  F ++ +  
Sbjct: 11  QIWDMKYRLKEADGTAIDGSVEDTWRRIAKALAAVEDDSATWEETFYTALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  IVAGAGTGRSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  ++    D  
Sbjct: 131 SGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKQ----DPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +    D FM+ V  +  W L   D                             
Sbjct: 187 RLRMFNMSVLATDPFMEAVKDDGPWDLVFGD----------------------------- 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KVFR + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 KVFRTVQARDLWNRIMRATYDYAEPGVIFIDRINAENNLNYAETICATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    ++        D  KLA    TA+R++DNV+D +   ++   + 
Sbjct: 276 --YGACLLGSVNLAQLVSDPFTDTADLDPIKLADLTATAIRMMDNVVDTSRFPLDAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +  + Y S EA    ++ M  I+  +  AS  LA E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALAMCRLRYGSEEAAAKTEDWMARIANASYRASALLAAEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F  + + +                        RL  D ++  +   G+RN+   +IAPT
Sbjct: 394 LFDAAEYAKAPM-------------------VQRLDAD-VQALIAEHGLRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P + N Y +  +  D T     +V+    +  W +          
Sbjct: 434 GTISLFAGNVSSGIEPIFANAYTRKVLQVDGTRTEEEVVDFAVAK--WRD---------- 481

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
              G+       L      A  + P+  +   +  Q WID + S  + +    S +    
Sbjct: 482 -MHGDTP-----LPDYFVNAQTLAPLDHVRMQAAAQPWIDSSISKTINVPADISFEAFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           +Y +A+  G K     R    T    S  +  D       +   +     +  P
Sbjct: 536 VYAEAYATGCKGCTTYRPNDVTGSVLSVSEADDKPQAIEAIEAASGEVVYMSEP 589


>gi|301321220|gb|ADK69863.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 720

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/747 (23%), Positives = 312/747 (41%), Gaps = 73/747 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 10  LDDVDDEYIKLNARSKIFLKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 69

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + +L++    FD +   N   Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 70  QYYDSEILNK--YSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 126

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A +    +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 127 TDRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 186

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 187 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 246

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 247 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 306

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 307 ALFSPYDVQKTYGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYP 364

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 365 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDICCNLGSLNI 424

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +  +     +K N  + A+GLG M     
Sbjct: 425 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVGLGAMNLHGF 480

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L +  I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G +     
Sbjct: 481 LAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYT 540

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +
Sbjct: 541 KCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYL 600

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 601 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 634

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++      A+E+ P  +I   +  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 635 ---DNMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNKAYVNAFK 691

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDG 921
            G  + YY+R R    +E S     D 
Sbjct: 692 QGCSSIYYVRIRQ-DVLEDSENYECDA 717


>gi|126728437|ref|ZP_01744253.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
 gi|126711402|gb|EBA10452.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
          Length = 762

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/652 (23%), Positives = 263/652 (40%), Gaps = 92/652 (14%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ I+   +  + R+A  LA  E E       FY  L  F ++ +  
Sbjct: 11  QIWDMKYRLKEADGTPIDLSVEDTWRRIARALAEVEAEPAVWEDRFYAALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTIPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 TGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIGAK----SDSA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNLSVLVTDTFMEAVKADGPWDLQF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+  + A  LW +++   ++   P + F D  N  +   +V  + ++N C E  L    
Sbjct: 218 TVYHTVQARDLWNRIMRATYDYAEPGVIFIDRINKANNLNYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGS+NL    A       + D D L   +  AVR++DNV+D +   + + +  
Sbjct: 276 --YGACLLGSVNLARLVAEPFTDAARLDEDALDELVTCAVRMMDNVVDASRFPLPQQEAE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++   Y S EA   A+  ++ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AQAKRRIGLGVTGLADALLMMGQRYGSEEAAVQAEGWLKRIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            F    +     +  +D                      ++++  V+  G+RN+   +IA
Sbjct: 394 LFDAEKYLASGNMMAMD----------------------EDVRSAVREHGIRNALVTSIA 431

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+   G  S  I+P +   Y +  +  D T     +V+   Q              
Sbjct: 432 PTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVDYAVQM------------- 478

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
           +    G    +PD        A  + P+  +   +  QKW+D + S  +   E  S +  
Sbjct: 479 YRAVHGEDAELPD----YFVNAQTLAPLEHVRMQAAAQKWVDSSISKTINCPEDISFEDF 534

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             +Y  A+  G K     R    T    S L   + K     V + ++   +
Sbjct: 535 KEVYMAAYETGCKGCTTYRPNDVTG---SVLSVSEEKKAPEVVANSDAEPQT 583


>gi|15604373|ref|NP_220889.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           prowazekii str. Madrid E]
 gi|3861065|emb|CAA14965.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) [Rickettsia
           prowazekii]
 gi|292572127|gb|ADE30042.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           prowazekii Rp22]
          Length = 607

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/681 (30%), Positives = 310/681 (45%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  + +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y 
Sbjct: 13  INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSHYA----ENKQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R   +++    I D FM+ V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPATKK--------------- 227

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVH 580
                       V  K+ A  LW K+LT   ETG P++ F D  N       ++    V 
Sbjct: 228 ------------VANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPEHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S +     VL++ 
Sbjct: 276 MSNLCSEITLPTGIDHLGNSRTAVCCLASLNL-EYYEVWKDDKEFIHSIMLFLDNVLEDF 334

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+   +T+ +AK +    R++GLG++GF S L +  IP  S  A     +  E+IS    
Sbjct: 335 INKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKIPIESVMAKVWNKKIFEYISAEVD 394

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+E+ +++GA                             A++  S             
Sbjct: 395 KASIEIGKDKGACPD--------------------------ALDSGSNE----------- 417

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++ 
Sbjct: 418 ---RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKG 474

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN
Sbjct: 475 FNNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALN 534

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L     KK L+ I+ +AW  G+K+ YY RS S    +K     V   +      D   
Sbjct: 535 IFLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADK-----VSHDVLKADFKDLEK 589

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
               L       +  EC  CQ
Sbjct: 590 QNDKLAQTR---NYEECLACQ 607


>gi|254467219|ref|ZP_05080630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
 gi|206688127|gb|EDZ48609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
          Length = 765

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/654 (24%), Positives = 266/654 (40%), Gaps = 87/654 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E + +    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKQADGAPIDVTVEDTWRRIARDLARAEKKPDAWEEKFYAALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARQVTLFNCFVMGTIPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEHFITAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDDFMEAVKADGSWELQF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV+  + A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L    
Sbjct: 218 KVYHTVEARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+    AN        D   +   + TAVR++DNV+D++   ++   + 
Sbjct: 276 --YGACLLGSINMARLVANPFEKDAHLDQAAMQELVATAVRMMDNVVDVSKFPLDAQAEE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+ 
Sbjct: 334 AKNKRRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHAIARAAYLASVELAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE-LKKRVKTIGMRNSNCMAIAP 768
            F    +                     +N  + L  DE ++  ++  G+RN+   +IAP
Sbjct: 394 LFDAEKY---------------------LNSGNMLNMDEDVRDAIREHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  ++ E   +D K  
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGADAK-- 488

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                        L      A  + P   ++  +  QKWID + S  +   E  S     
Sbjct: 489 -------------LPDYFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFK 535

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
            +Y QAW  G K     R    T    +  +  D            S     G 
Sbjct: 536 DVYMQAWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGETAKAPHESDMGENGA 589


>gi|111073617|emb|CAL29480.1| ribonucleoside-diphosphate reductase alpha chain [Wolbachia
           endosymbiont of Onchocerca volvulus]
          Length = 609

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 198/685 (28%), Positives = 311/685 (45%), Gaps = 111/685 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A       ++ ++ A   Y+
Sbjct: 21  INHEKNVKLTSFGKAVLLDRYLIEN-----ESYQDLFIRIASYY----SDNKEHAQRLYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 72  YISNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 132 GNLRSIGESVK-GSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 190

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK T GD  R+  +++ A  + D FM+ V ++  W L SP                   
Sbjct: 191 IRKPTGGDPNRKALNIHHAVIVNDEFMQAVERDLEWDLISPHS----------------- 233

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVH 580
                      KV   + A  +W K+L    ETG P+I F +  N     S ++    + 
Sbjct: 234 ----------NKVISTVKARDIWVKILIARVETGEPYIIFLNAINNNKPESYKKLNLDIK 283

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  +      ++      I   +R LDNV
Sbjct: 284 MSNLCSEITLTTGYDHLNKPRTAVCCLSSVNLEYYEEWKDSEF-----FIEDIMRFLDNV 338

Query: 636 ----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               I+   + I++AK S    R+IGLG+MGF S L    +P+ S  A +      + + 
Sbjct: 339 FEDFINKAPNEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKRIFKHLR 398

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S +LA+E+GA                                         L  
Sbjct: 399 EQADIISKKLAEEKGAC----------------------------------------LDA 418

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +   +  R ++ +AIAPTA+I+ I G +   I+P   N++ +  ++G F V N FL   L
Sbjct: 419 KEINLMERFTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLL 478

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +++  ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+
Sbjct: 479 AKKNQDNDKVWSSISTNEGSVQHLDFLNEHEKLTFKTAYELDQRWIIEHASDRTPYICQS 538

Query: 871 QSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+NL+L     K+ L  I+  AW   LK+ YY RS S    +K +    +        T
Sbjct: 539 QSVNLFLPPNIHKRYLHKIHMLAWKKNLKSLYYCRSLSIQRADKVSHDISEKNEILHQKT 598

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           D                  EC  CQ
Sbjct: 599 D--------------IDYDECLSCQ 609


>gi|51473695|ref|YP_067452.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           typhi str. Wilmington]
 gi|51460007|gb|AAU03970.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
          Length = 607

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/681 (29%), Positives = 312/681 (45%), Gaps = 97/681 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  + +      G  IL DRY +       E  Q  F RV+   A    E ++ A + Y 
Sbjct: 13  INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYA----ENKQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTGDDRRRTH-DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R   +++    I D FM+ V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPATKK--------------- 227

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVH 580
                       V  K+ A  LW K+LT   ETG P++ F D  N       ++    V 
Sbjct: 228 ------------VANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPAHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            SNLC+EITL +  +      TAVC L S+NL  ++   + D + + S +     VL++ 
Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNL-EYYEVWKDDKEFIHSIMLFLDNVLEDF 334

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I+   +T+ +AK +    R++GLG++GF S L +  +P  S  A     +  E+IS    
Sbjct: 335 INKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKVPIESVMAKVWNKKIFEYISSEVD 394

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+E+A+++GA                             A++  S             
Sbjct: 395 KASIEIAKDKGACPD--------------------------ALDSGSNE----------- 417

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++ 
Sbjct: 418 ---RFSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKG 474

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN
Sbjct: 475 FNNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALN 534

Query: 875 LYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           ++L     KK L+ I+ +AW  G+K+ YY RS S    +K +        + V   D   
Sbjct: 535 IFLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADKVS--------HDVLKADFKD 586

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                   +   +  EC  CQ
Sbjct: 587 LEKQNAKLAQTRNYEECLACQ 607


>gi|256384255|gb|ACU78825.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256385088|gb|ACU79657.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455870|gb|ADH22105.1| ribonucleoside-diphosphate reductase, alpha subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 720

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/733 (23%), Positives = 308/733 (42%), Gaps = 72/733 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 10  LDDVDDEYIKLNARSKIFSKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 69

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + +L++    FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 70  KYYDSEILNK--YSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 126

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A      +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 127 TDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 186

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 187 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 246

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 247 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 306

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  +++    +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 307 ALFSPYDVQKVYNKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYP 364

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 365 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDICCNLGSLNI 424

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +  +     +K N  + A+GLG M     
Sbjct: 425 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVGLGAMNLHGF 480

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G +     
Sbjct: 481 LATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYT 540

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +
Sbjct: 541 KCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAVAPTGSISYL 600

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 601 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 634

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++      A+E+    +I   +  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 635 ---DNMGYYAMGAYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFK 691

Query: 895 MGLKTTYYLRSRS 907
            G  + YY+R R 
Sbjct: 692 QGCSSIYYVRIRQ 704


>gi|294155963|ref|YP_003560347.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
 gi|291600345|gb|ADE19841.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
          Length = 718

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 177/717 (24%), Positives = 307/717 (42%), Gaps = 73/717 (10%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND-LKYERDF 291
              +Y K     + ++     E F   ++ G     L +     D+  L    + Y   F
Sbjct: 39  AARLYMKHHALPNTKVFNSIKERFDYLVKHGYYEDELVKKYNIKDIEKLRQYAIDYHFKF 98

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
              ++G    Y+ Y L       E  + +  R  M          + A      + S  +
Sbjct: 99  T-SFMGALKFYNAYCLKSFDD-TEYLEQYEDRALMNALFIGDGNVEVAQATLEEIMSGRY 156

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G  +  +  SC+L  V D++  I   +  +  L+K  GG+    T +R L
Sbjct: 157 QPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARGISTSLQLSKRGGGVALCLTNLREL 216

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     ++ G++P +K+  D+    NQ G+R+GA   YL   H DV  FLD ++   
Sbjct: 217 GAPIKNIQNQATGIVPVMKILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLDTKRENA 276

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D++ R   ++    +PD+  +    N    LFSP +V   +     +  I  E Y    +
Sbjct: 277 DEKIRIKSLSLGLVLPDITFELAKNNEDMALFSPYDVQREYGKAFSDISITKEYYNMLNN 336

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           +   K F  ISA  L++ +  + FE+G+P++ F D  N RS     G +  SNLC+EI  
Sbjct: 337 KNIKKTF--ISARKLFQTIAELHFESGYPYLLFDDTVNDRSAHP--GRIIMSNLCSEIAQ 392

Query: 591 NSSS------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
            SS              E   CNLGS+N+           +K + +I  A+  L+++   
Sbjct: 393 PSSETTYNPDLSFVKLGEDIACNLGSMNIDKLMQAG----NKFSDSIYRAIYALNHIATN 448

Query: 639 NCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +  +     +  N  +RAIGLG M     L    I Y + EAVE  D      ++H+  A
Sbjct: 449 SDLSAAPSIQNGNKRNRAIGLGAMNLHGFLSTNSIYYNTKEAVEFTDLFFYTFAYHSFKA 508

Query: 698 SVELAQE-RGAYSSFKGSLWDQGVFPIDSIG-----------LLAEVRDELAMNRTSRLP 745
           S +LA+E  G +++F+ + +  G +                 ++AE+  +  ++  ++  
Sbjct: 509 SNKLAKEGFGKFANFENTKFATGEYFDKYTKAKDDEYKPKSQIVAELFKKFDVHIPTKQE 568

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W EL K ++  G+ NS+ MAIAPT +I+ + G + S+ P   ++ V+         V ++
Sbjct: 569 WKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVADVEVRKEGKLGRVYVPAY 628

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            ++E                             ++ K     A+E+ P+ +I+  +  QK
Sbjct: 629 KISE-----------------------------ENKKYYQMGAYEVGPLPIIDVVAAAQK 659

Query: 866 WIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            IDQA SL L+  D  + + L+  Y  A+     + YY+R R      +  L+G + 
Sbjct: 660 HIDQAISLTLFVKDTVTTRDLNKAYIYAFKQKCASIYYVRIR------QDVLEGSEN 710


>gi|56478191|ref|YP_159780.1| ribonucleotide reductase, coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
 gi|56314234|emb|CAI08879.1| Ribonucleotide reductase, Coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
          Length = 963

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/663 (26%), Positives = 278/663 (41%), Gaps = 80/663 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTP 356
           ++L ++Y      S  E+      RVA  LA+ E E  KRA      L +    F+ +  
Sbjct: 26  EVLVEKYAKGDERSVGEVR----ARVARALAIVEAED-KRAHWEAKFLEAQEKGFVPAGR 80

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVR 408
               +GT     L +CF+  V D +        GI+ AL + A   +  GG+G D++ +R
Sbjct: 81  INSAAGTNLQATLINCFVQPVGDSVTEAVDGRPGIYTALAQAAETMRRGGGVGYDFSSIR 140

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT   + G + +++V + +   V   G R+GA    L   H DVEEF+  +  
Sbjct: 141 PKGALVRGTLSNASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDVEEFIHAK-- 198

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D     + N +  + D FMK V  +A   L    E  +     G         Y+R 
Sbjct: 199 ---DHGDLTNFNISVGVSDAFMKAVDTDADVELAHKAEPIEELKAAG--------AYQRD 247

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V+RK+ A  LW +++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 248 DG---LWVYRKLPARELWDQIMRSTYDHAEPGILFLDRMNQDNNLHYCETIEATNPCAEQ 304

Query: 589 TLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LGSINL            +FDY      +  A+R+LDNV+D+    +
Sbjct: 305 PLPP----YGCCDLGSINLTPFIKHPFTDKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPL 360

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +    + R +GLG  G   AL +L   Y SP+A  +A +  E++   A  ASVELA+
Sbjct: 361 PQQENEAQSKRRVGLGFTGLGDALIMLCKRYDSPDARAVATKISEYMRDRAYLASVELAK 420

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+  F   L+  G                   N  SRLP D LK +++  G+RNS+ 
Sbjct: 421 ERGAFPLFNADLYLSGG------------------NFASRLPAD-LKDKIRKHGLRNSHL 461

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT TI+       S  I+P +   Y +     D T    + V +   R        
Sbjct: 462 LSIAPTGTISLAFADNASNGIEPPFSYTYTRRKRMADGTYKE-YPVEDYAWRLF------ 514

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
              K+  G++       D+L     TA EI      +  +    ++D + S  + + E  
Sbjct: 515 ---KHLGGNV-------DELPPYFVTALEISAQAHKDMVAAVAPYVDTSISKTVNVPEDY 564

Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
              + + +Y  AW  GLK     R  S   SV   T      +   +  + PN       
Sbjct: 565 PYAEFEDLYLSAWKAGLKGLATYRPNSVLGSVLSVTPSAAPKQPQDIEFSGPNKRLAIKS 624

Query: 940 IPS 942
           +P+
Sbjct: 625 LPA 627


>gi|42561372|ref|NP_975823.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492870|emb|CAE77465.1| ribonucleoside-diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
          Length = 723

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/747 (23%), Positives = 312/747 (41%), Gaps = 73/747 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 13  LDDVDDEYIKLNARSKIFLKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 72

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + +L++    FD +   N   Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 73  QYYDSEILNK--YSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 129

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A +    +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 130 TDRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 189

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 190 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 249

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 250 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 309

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 310 ALFSPYDVQKTYGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYP 367

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 368 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDICCNLGSLNI 427

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +  +     +K N  + A+GLG M     
Sbjct: 428 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVGLGAMNLHGF 483

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L +  I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G +     
Sbjct: 484 LAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGSWFDKYT 543

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W +L + +K  G+ NS+ MA+AP+ +I+ +
Sbjct: 544 KCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAVAPSGSISYL 603

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 604 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 637

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++      A+E+ P  +I   +  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 638 ---DNMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNKAYVNAFK 694

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDG 921
            G  + YY+R R    +E S     D 
Sbjct: 695 QGCSSIYYVRIRQ-DVLEDSENYECDA 720


>gi|313665033|ref|YP_004046904.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
 gi|312949963|gb|ADR24559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
          Length = 720

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/747 (23%), Positives = 310/747 (41%), Gaps = 73/747 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 10  LDDVDDEYIKLNARSKIFSKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 69

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + +L++    FD +   N+  Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 70  QYYDSEILNK--YSFDQISQLNNYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 126

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A      +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 127 TDRVLMNALFLGNGNFNKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 186

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 187 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 246

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 247 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 306

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V   +     +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 307 ALFSPYDVQKTYGKPLSDISITEKYYEMLENPNIKKTY--ISARKFFLTVAELHFESGYP 364

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 365 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNI 424

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +        KK N  + A+GLG M     
Sbjct: 425 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLNASPSIKKGNAENHAVGLGAMNLHGF 480

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L    I Y SPEAV+  +     ++++A  AS +LA+E   ++SF  S +  G +     
Sbjct: 481 LATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAKEFEKFASFDQSRFADGSWFDKYT 540

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +
Sbjct: 541 KCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAVAPTGSISYL 600

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 601 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 634

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++       +E+ P  +I  A+  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 635 ---DNMGYYAMGTYELGPDPIINIAAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFK 691

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDG 921
            G  + YY+R R    +E S     D 
Sbjct: 692 QGCSSIYYVRIRQ-DVLEDSENYECDA 717


>gi|308183793|ref|YP_003927925.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047719|gb|ADO00262.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 636

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/657 (24%), Positives = 271/657 (41%), Gaps = 80/657 (12%)

Query: 289 RDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           RD  F    +LG    Y +Y +  N  + +  + F  RV           E+ A +  + 
Sbjct: 2   RDHHFRFRSFLGAYKFYTQYAMKTNDGQ-QFLEDFVDRVVFNALYLANGDEQLANDIADE 60

Query: 346 LSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G  R  ++ SCFL  V D +  I   +     L++  GG+G + 
Sbjct: 61  LISQRYQPATPTFLNAGKKRRGEMVSCFLIDVADSMLSIGRGVNSALQLSRIGGGVGVNL 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  I   +  S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FLD
Sbjct: 121 SNLRASGDPIKQISNASSGVVPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHPDILHFLD 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LFSP +V   +       +I  E 
Sbjct: 181 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNEPMYLFSPYDVEREYRTPFAYIDITKE- 239

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y   A           +A  L +K+  +  E+G+P+I   D  N  +     G +  SNL
Sbjct: 240 YNNMAANP-NIKKSVFNARKLEQKISQLQQESGYPYILNIDTANQTN--PVDGKIIMSNL 296

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI       +               CNLGS N++     N  D      ++  AVR L
Sbjct: 297 CSEILQPQEPSKLDDDLSYKTIGTDISCNLGSTNIM-----NMIDSPDFGHSVEVAVRAL 351

Query: 633 DNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D      +   K  N  +  IGLG MG  +AL    I Y SPEA+E  D     ++
Sbjct: 352 TLVTDTTDVKEVPTVKHGNELYHTIGLGAMGLHTALARHQIEYGSPEALEFTDAYFLALN 411

Query: 692 FHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAE------VRDELAMNRTSRL 744
           ++++  S  +A+E    ++ F  S +  G +    +    +       +    +   S  
Sbjct: 412 YYSLVTSNRIARERHETFAKFDQSKYADGSYFDQYLNADFKFKSTKVAKIFKNIKLPSVT 471

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK+ V T G+ + N +A+AP  +I+ +   S S+ P  Q +  +            
Sbjct: 472 DWKALKQAVITGGLYHRNRLAVAPNGSISYVNETSASLHPITQLVEQRQ----------- 520

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                        E  +  + Y          + ++    +  A++ID   +I++ +  Q
Sbjct: 521 -------------ENKVGSIFYPA------PYLSNETLPYYTPAYDIDQRKIIDTYAVAQ 561

Query: 865 KWIDQAQSLNLYLDE----------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           K IDQ  SL L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 562 KHIDQGMSLTLFMRSVLKPDLYEWKDNNNLKMTTRDLNRLRNYAWTKGIKSLYYIRT 618


>gi|331703802|ref|YP_004400489.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|328802357|emb|CBW54511.1| Ribonucleoside diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 723

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/733 (23%), Positives = 309/733 (42%), Gaps = 72/733 (9%)

Query: 209 LIEKEPNYAKVTARFLLE-------KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L + +  Y K+ AR  +        +L  +      K   +    +   L          
Sbjct: 13  LDDVDDEYIKLNARSKIFSKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLEN 72

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAF 320
           +   + ++++    FD +   ND  Y  +  F  ++G    ++ Y L    + + + + +
Sbjct: 73  QYYDSEIVNK--YSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYL-ETY 129

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDD 379
             RV M           +A      +    F  +TPT  N+  +H  +  SC+L    D+
Sbjct: 130 TDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDN 189

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+    +
Sbjct: 190 MESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYAD 249

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N   
Sbjct: 250 QLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDNKDM 309

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  +++    +  I  + YE   +    K +  ISA   +  +  + FE+G+P
Sbjct: 310 ALFSPYDVQKVYNKPLSDISITEKYYEILENPNIKKTY--ISARKFFLTVAELHFESGYP 367

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N R+     G +  SNLC+EI   S++ E               CNLGS+N+
Sbjct: 368 YILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCNLGSLNI 427

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666
                + +    + + +I  A+  LD V   +  +     +K N  + A+GLG M     
Sbjct: 428 DKMMKSGK----EFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVGLGAMNLHGF 483

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS- 725
           L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G +     
Sbjct: 484 LATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYT 543

Query: 726 ----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                        + E+  +  +   S+  W +L + +K  G+ NS+ MA+APT +I+ +
Sbjct: 544 KCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIKLVEEIKKTGLANSHLMAVAPTGSISYL 603

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+         V ++ +N                           
Sbjct: 604 SSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINF-------------------------- 637

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D++      A+E+ P  +I   +  Q+ +DQA SL L++ D+ + + L+  Y  A+ 
Sbjct: 638 ---DNMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNKAYVNAFK 694

Query: 895 MGLKTTYYLRSRS 907
            G  + YY+R R 
Sbjct: 695 QGCSSIYYVRIRQ 707


>gi|225351963|ref|ZP_03742986.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157210|gb|EEG70549.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 727

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/745 (22%), Positives = 292/745 (39%), Gaps = 85/745 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP---------EYFCRYIEEGVK 265
           ++  + A   L    ++      K  Q    +  + + P         +   R I +G  
Sbjct: 23  DWHSLNAMLNLYD--KQGRIQFDKDIQAVREYVEKHVLPNTVRFNSTQDRLSRLIADGYY 80

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
              +        L     ++  +  F F  +LG    +  Y L     + +  + F  R 
Sbjct: 81  DESVFAQYDAEFLDRFYRNVD-DCGFEFDTFLGAFKFHRSYALKTFDGK-QYLENFPQRA 138

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383
           A             A  ++  L S  F  +TPT  N G  +  +  SCFL  + D++  I
Sbjct: 139 AAVALALAAGDHAAAESYFEELISGRFQPATPTFLNLGKAQRGEAVSCFLVRIEDNMESI 198

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
              +     L+K  GG+    + +R  GA I     +S GV+P +K+  D+    NQ G 
Sbjct: 199 SRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGVVPVMKLLEDSFSYANQLGA 258

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   ++    LFS
Sbjct: 259 RQGAGAVYLNAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHEPMALFS 318

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +V  +      +  I+ ENY       E      I A   +  +  + FE+G+P++ F
Sbjct: 319 PYDVERVMGRPFADVSIS-ENYRNMV-DDERIGKTYIDAREFFMTLAELQFESGYPYMVF 376

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHF 611
           +D  N  +     G +  SNLC+EI                       CNLGS+N+    
Sbjct: 377 EDTVNRAN--PIDGRIAMSNLCSEILQVQEPSTYHEDLSYNHVGRDVSCNLGSLNIAKAM 434

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                    L  T+  A+R L +V +      +   +++N    AIGLG M     L   
Sbjct: 435 DG------DLGRTVERAIRALTSVSEHTDIACVPSIRRANDEGHAIGLGQMNLHGFLARE 488

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ----GVFPIDS 725
            I Y SPEA++  D     +++HA  AS ELA ERG  ++ F+ S + +    G +    
Sbjct: 489 SIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFAGFERSAYAKPAGAGNYFDKY 548

Query: 726 I----------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                      G +A +     ++  +   W  L+  +   G+ N    A+ PT +I+ I
Sbjct: 549 TNGERSLAPKTGKIASLFARRGIHIPNEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISYI 608

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + SI P    + ++                         E  I  + Y         
Sbjct: 609 NHSTSSIHPIASKIEIRK------------------------EGKIGRIYYPA------P 638

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            + +D  +  A A+EI    ++++ +   + +DQ  SL L+  D  + + L+     AW 
Sbjct: 639 YMTNDNLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYAWR 698

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919
            G+KT YY+R R   ++  + ++G 
Sbjct: 699 KGIKTLYYIRIRQ-QALSGTEVQGC 722


>gi|126650013|ref|ZP_01722246.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126593185|gb|EAZ87147.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 697

 Score =  423 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/679 (25%), Positives = 308/679 (45%), Gaps = 67/679 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     ++EG   +   + M + D + +     Y+ +F F  ++     YD Y +    
Sbjct: 49  EEKIRYLVDEGYYEKDFID-MYEMDFIKMLYKKAYDYNFRFPSFMSASKFYDSYAMKSRD 107

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
               +E  +   + +A+ LA   T   KR+VE   ++ +  +  +TPT  NSG +   +L
Sbjct: 108 GEEILEKYEDRIVIIALYLAQGNTVLAKRSVE--AMMEA--YQPATPTALNSGKKARGEL 163

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCF  ++ D +  I   +     L++  GG+G + T +R LG  I     ++ GVIP  
Sbjct: 164 VSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKEILNRASGVIPVA 223

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R   ++T   IP +
Sbjct: 224 KLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIRLATLSTGIIIPSI 283

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F   + ++    LFSP ++  ++     E  I+ E Y    D  +I+  ++++A  L+ +
Sbjct: 284 FFDLMKRDKDIVLFSPYDIFKVYGKRMSEISIS-EMYYELLDNPKIRKIKRLNARRLYTE 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV 599
           +    FE+G+P+  F D  N   P +++G V  SNLCTEI                E  +
Sbjct: 343 VKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMSNLCTEILQVQETSVITDQDQPNEYGL 402

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGSI++ A    N F      + I TA+ +L NV  +     +    K+N    +
Sbjct: 403 DVSCNLGSIDIHAASKVNDF-----ETLIDTAMHLLTNVSQMTYIKNVPSVAKANRLMHS 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           +GLG M     L    I Y S ++++  D  ME ++++++ +S+E+A+E+   +  F+ S
Sbjct: 458 VGLGCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYSLKSSMEMAKEKAETFYRFEDS 517

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAP 768
            +  G +    +    E      +     +P      W+ LK+ V   G+ +S  +AIAP
Sbjct: 518 DYASGSYFDQYVNKNEEELSSAVLKALGNIPIITNKMWELLKEDVMEYGLFHSYRLAIAP 577

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P  + + V+             L NE                   
Sbjct: 578 TGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTNE------------------- 618

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                          ++  A+++DP  LI+  +  QK +DQ  S+ LY  D  + ++L  
Sbjct: 619 ------------NSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMTLYVTDNWTTEQLAK 666

Query: 888 IYRQAWLMGLKTTYYLRSR 906
           +Y  AW+ G+K+ YY+R R
Sbjct: 667 VYIYAWVKGIKSVYYVRQR 685


>gi|307703870|ref|ZP_07640811.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
 gi|307622705|gb|EFO01701.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
          Length = 623

 Score =  423 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/645 (24%), Positives = 268/645 (41%), Gaps = 75/645 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y++Y L  N     + ++   RV           E  A +  N +    +  +T
Sbjct: 1   MAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQRYQPAT 59

Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           P+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +R  GA I
Sbjct: 60  PSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPI 119

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K   D++ 
Sbjct: 120 KGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKV 179

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+       I
Sbjct: 180 RVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDELVANPNI 238

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+EI      
Sbjct: 239 RKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSEILQVQEP 295

Query: 595 E------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CH 641
                            CNLGS N++    +  F       +IR  VR L  V D +   
Sbjct: 296 SLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDF-----GRSIRAMVRALTFVTDSSHIV 350

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +      N      GLG MG  S L    I Y S E+VE        +++  +  S  +
Sbjct: 351 AVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVESNNI 410

Query: 702 AQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKRVK 754
           A+ERG  + +F+ S +  G +         +     V++    +   S   W EL+++V+
Sbjct: 411 ARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSATDWAELREKVQ 470

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ + N +A+AP  +I+ I  VS SI P  Q +  +                      
Sbjct: 471 ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ--------------------- 509

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E  I  + Y    + + + IP      + +A+++D   +I+  +   + +DQ  SL 
Sbjct: 510 ---EKKIGKIYYPAAGL-STDTIP-----YYTSAYDMDMRKVIDVYAAATEHVDQGLSLT 560

Query: 875 LYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 561 LFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 605


>gi|289423476|ref|ZP_06425278.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156110|gb|EFD04773.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 704

 Score =  423 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/682 (24%), Positives = 287/682 (42%), Gaps = 71/682 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING- 311
           E     +E     + + E      +  L   +     F F  Y+     Y+ Y L  +  
Sbjct: 51  EKIDYLVENAYYEKEIIEKYSREFIDELYKYIC-SFGFEFMSYMSASKFYENYALKTDDG 109

Query: 312 -SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLS 369
              +E  +   +  ++ +A  +T   + A +    L    F  +TPT  N G +   QL 
Sbjct: 110 KKILENYEDKILICSLAIASGDT---RVAKDVAKRLIKQEFQPATPTFLNLGRKRAGQLV 166

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL TV D   GI  A+     L+K  GG+  + T +R  G  I G  G S GV+   K
Sbjct: 167 SCFLLTVEDSCEGISYAVASANHLSKIGGGVALNLTRLRARGESIKGIEGASGGVVGVAK 226

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +   +    NQ G R+GA   YL   H D +  +D +K   D+R R   ++    IPD+F
Sbjct: 227 MLEQSFSYFNQMGARQGAGAVYLNVLHADFDALMDTKKINADERVRLATLSIGAIIPDVF 286

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MK   +N     F P  +   + L+  +  +  E Y++     +I+  ++I+   +  ++
Sbjct: 287 MKLAEKNEVGYAFYPHSIYKKYALHLDDLNM-NEWYDKLVADPDIRK-KEINPRVILTRI 344

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------- 596
                E+G+P+I + D  N     + +G+V  SNLC EI    S                
Sbjct: 345 AATQMESGYPYIVYIDTANKNHTLKGLGMVRMSNLCCEIFQYQSPSHIEGYGSKNSQWGQ 404

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+       +         I  A+R L +V D  N   +   K  N    +
Sbjct: 405 DISCNLGSLNIANIMEGKEM-----GHAIDVAIRFLTDVSDRTNIEEVPTVKNGNDKSHS 459

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           +GLG M     L   +I Y S EAV+  +     + +HAI  S+++A+E+   +  F+ S
Sbjct: 460 VGLGAMNLHGYLMKNNIRYDSDEAVDFCNVFFAMMRYHAIKTSMKIAKEKGQTFDGFEKS 519

Query: 715 LWDQGV--------FPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            + +G         + ID +    +VR     M    +  W +L  +VK +G+ N+  MA
Sbjct: 520 EYSKGESSDVLGKYYQIDYLPKTDKVRALFEGMMIPRKEDWKDLLDQVKEVGIYNAYLMA 579

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P  + + V+  + GD T +                       
Sbjct: 580 IAPTQSISYVQNATSSVMPITEQIEVR--IYGDSTTIYP--------------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKK 884
                   +  + ++    + +A+  D + +I+  +  Q  +DQ  S  L++ +  + + 
Sbjct: 617 --------MPFLTNENLLFYKSAYNTDMLKVIDVVAAVQDHVDQGISTTLFVTDDKTTRD 668

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           +   Y  A+  GLK+ YY R++
Sbjct: 669 IARYYIYAYKKGLKSLYYTRTK 690


>gi|327440527|dbj|BAK16892.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 697

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 305/679 (44%), Gaps = 67/679 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     ++EG   +   E +   D +       Y   F F  ++     Y+ Y +    
Sbjct: 49  EEKVRYLVDEGYYEKEFLE-LYSMDFIKQMYKKAYSYKFRFPSFMSASKFYESYAMKSRD 107

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
               +E  +   + +A+ LA  +    ++A+E   ++++  +  +TPT  NSG +   +L
Sbjct: 108 GKEILEKYEDRIVIIALYLAQGDEALAEKAIE--AVMTA--YQPATPTALNSGKKARGEL 163

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCF  T+ D +  I   +     L++  GG+G + T +R LG  I G   ++ GV+P  
Sbjct: 164 VSCFKLTMDDTMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKGILNRASGVMPVA 223

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R   ++T   +PD+
Sbjct: 224 KLLENSFSYSNQLGQRNGSGVVYLNVFHGDIEAFISSKKPNADDKIRLATLSTGIILPDI 283

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F + + ++    LFS  ++   +     E  I  E Y    D   I+  ++++A  L+ +
Sbjct: 284 FFELMRRDKDIVLFSSYDIFKEYGKRMSEISIT-EMYYEFLDNPNIRKLKRLNARKLYTE 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN---------SSSEETAV 599
           +    FE+G+P+  F D  N   P + +G V  SNLCTEI            +   E  +
Sbjct: 343 IKKAQFESGYPFEIFDDNVNNTHPLKEIGRVKMSNLCTEILQYQQTSVVTDQNEPNEYGL 402

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGSI++                 + TA+R+L NV  +     +    K+N    +
Sbjct: 403 DVSCNLGSIDIHEATK-----VQDFGQLVDTAMRLLTNVSTMTDIVNVPSVSKANKVMHS 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGS 714
           +GLG+M     L    I Y S E++E  D  ME +++H++ AS+E+A+ +   +  F+ S
Sbjct: 458 VGLGVMNLHGHLVQSGIRYGSKESIEFIDAFMESLNYHSLKASMEIAKQKNETFYRFEES 517

Query: 715 LWDQGVFPIDSIGLLAE------VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +  GV+    +    +      ++        +R  W++LK  V   G+ +S  +AIAP
Sbjct: 518 DYASGVYFESYVNKEEKELTPEVIKALGGTPIITRNMWEQLKSDVLKHGLFHSYRLAIAP 577

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P  + + V+            FL N                    
Sbjct: 578 TGSISYIRSCTASISPVTERVEVRDYADSRTIYPMPFLTN-------------------- 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                      D ++++  A+E++P  LI+  +  QK +DQ  S+ LY  D+ + ++L  
Sbjct: 618 -----------DNQELYTEAYEVNPYELIDLYAAAQKHVDQGISMTLYVTDQWNTEQLAK 666

Query: 888 IYRQAWLMGLKTTYYLRSR 906
            Y  AW  G+KT YY+R R
Sbjct: 667 AYIYAWTKGIKTVYYVRQR 685


>gi|163732870|ref|ZP_02140315.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
 gi|161394230|gb|EDQ18554.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
          Length = 834

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 157/650 (24%), Positives = 266/650 (40%), Gaps = 92/650 (14%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  + R+A  LA  E   +    +FY+ L  F ++ +  
Sbjct: 11  QIWDMKYRFKEADGAPIDVTVEDTWRRIARDLARVEKTPDIWEEQFYSALKDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V  +  W L                               + 
Sbjct: 187 RLRMFNMSVLVTDPFMEAVKADGPWDLVF-----------------------------DG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 218 QVYRTLQARDLWNRIMQATYDYAEPGVIFIDRINQANNLNYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSIN+            + D   L   + TAVR++DNV+D +   +E   + 
Sbjct: 276 --YGACLLGSINMARLVSAPFEEAAKLDEVALNDLVATAVRMMDNVVDASKFPLEAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
            H  R IGLG+ G   AL ++ + Y S EA    D  +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AHAKRRIGLGVTGLADALLMVGLRYGSDEAARQTDRWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F    +   G                           +++++ V+  G+RN+   +IAP
Sbjct: 394 LFDADKYLASGTMQ---------------------AMDEDVREAVREHGIRNALLTSIAP 432

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W E         
Sbjct: 433 TGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MWREKFGDK---- 486

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LD 886
                       +L      A  + P+  ++  +  QKW+D + S  +   E  G     
Sbjct: 487 ------------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFK 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +Y +AW  G K     R  + T     ++  V  K  A    +P+    
Sbjct: 535 DVYMEAWDSGCKGCTTYRPNAVTG----SVLSVSEKKKAPEFDNPSDRLD 580


>gi|293364079|ref|ZP_06610815.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
 gi|292552569|gb|EFF41343.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
          Length = 726

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 177/750 (23%), Positives = 315/750 (42%), Gaps = 83/750 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC-----RYIEEGVKARLL 269
            Y  + A+  L    +       +  +    H       E+       +Y+ +       
Sbjct: 15  EYIALNAKSKLFTFGKNDFFQDIEAARLYMKHNALPNTREFESVKERFQYLIKHNYYEAE 74

Query: 270 HESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLH--INGSRIEMPQAFFMRVAM 326
             +   F+ +    +      F F  ++G    Y+ Y L    +   +E  +   +  A+
Sbjct: 75  LVNKYSFEDIEALREYALSFHFKFTSFMGALKFYNAYCLKSFDDTEYLERYEDRALMNAL 134

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
            +        + A      + +  +  +TPT  N+G  +  +  SC+L  V D++  I  
Sbjct: 135 FIG---NGNVEVAKNTLEEIMTGRYQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIAR 191

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+  +  L+K  GG+    T +R LGA I     ++ GVIP +K+  D+    NQ G+R+
Sbjct: 192 AISTSLQLSKRGGGVALCLTNLRELGAPIKNIENQATGVIPVMKILEDSFSYANQLGQRQ 251

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H DV  FLD ++   D++ R   ++    +PD+  +   +N   +LFSP 
Sbjct: 252 GAGVVYLSAHHPDVMTFLDSKRENADEKIRIKSLSLGLVVPDITFELAKKNEDMSLFSPY 311

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +V  ++     +  I  E Y    ++   K +  +SA   +  +  + FE+G+P++ F D
Sbjct: 312 DVEKVYKKPFSDISITKEYYNMLNNKAIKKTY--VSARKFFTSIAELHFESGYPYLLFDD 369

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFAN 613
             N RS     G +  SNLC+EI   SS              E   CNLGS+N+      
Sbjct: 370 TVNDRSALP--GRIIMSNLCSEIAQPSSPSTYNADLSYKTMGEDIACNLGSMNIDKLMHA 427

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                +K + +I  ++  L+++   +   +    +K N  +RAIGLG M     L + HI
Sbjct: 428 G----EKFSESIYRSIYALNHISTNSDLSSAPTIEKGNKKNRAIGLGAMNLHGFLAVNHI 483

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL--- 728
            Y S EAVE  D      ++HA  AS  L ++  G +  F+ + +  G +      +   
Sbjct: 484 FYNSQEAVEFTDLFFYTFAYHAFKASNRLVKDGFGKFEGFENTKFATGEYFDKYTKVSDE 543

Query: 729 --------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   +AE+  +  ++  ++  W EL K ++  G+ NS+ MAIAPT +I+ + G + 
Sbjct: 544 EYKPKHASVAELFRKHNVHIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTP 603

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P   ++ V+         V ++                              +I D+
Sbjct: 604 SLQPVVSDVEVRKEGKLGRVYVPAY------------------------------KISDE 633

Query: 841 LKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
            K+ +   A+E+ PM +I+  +  QK IDQA SL L+  D  + + L+  Y  A+     
Sbjct: 634 NKEFYKLGAYEVGPMPIIDIVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFSKKCA 693

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + YY+R R      +  L+G +        
Sbjct: 694 SIYYVRIR------QDVLEGSENLDEDTSS 717


>gi|212716022|ref|ZP_03324150.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661389|gb|EEB21964.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
          Length = 698

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 165/697 (23%), Positives = 277/697 (39%), Gaps = 74/697 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS 312
           +   R I +G     +        L     ++  E  F F  +LG    +  Y L     
Sbjct: 40  DRLSRLIADGYYDESVFAQYDTEFLDRFYRNVD-ECGFEFDTFLGAFKFHRSYALKTFDG 98

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSC 371
           + +  + F  R A             A  ++  L S  F  +TPT  N G  +  +  SC
Sbjct: 99  K-QYLENFPQRAAAVALALAAGDHAAAESYFEELVSGRFQPATPTFLNLGKAQRGEAVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    + +R  GA I     +S G++P +K+ 
Sbjct: 158 FLIRIEDNMESISRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGIVPVMKLL 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +
Sbjct: 218 EDSFSYANQLGARQGAGAVYLSAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFE 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              ++    LFSP +V  +      +  I+ ENY       E      I A   +  +  
Sbjct: 278 LAKRHERMALFSPYDVERVMGRPFADVSIS-ENYRNMV-DDERIGKTYIDAREFFMTLAE 335

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599
           + FE+G+P++ F+D  N  +     G +  SNLC+EI                       
Sbjct: 336 LQFESGYPYMVFEDTVNRAN--PIDGRIAMSNLCSEILQVQEPSTYHEDLSYDHVGRDVS 393

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+             L  T+  A+R L +V +      +   +++N    AIGL
Sbjct: 394 CNLGSLNIAKAMDG------DLGRTVERAIRALTSVSERTDIACVPSIRRANDEGHAIGL 447

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L    I Y SPEA++  D     +++HA  AS ELA ERG  +  F+ S + 
Sbjct: 448 GQMNLHGFLARESIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFVGFERSAYA 507

Query: 718 Q----GVFPIDSI----------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           +    G +               G +A +     ++      W  L+  +   G+ N   
Sbjct: 508 KPTGAGNYFDKYTNGERPLAPKTGKVASLFARRGIHIPDEDDWRRLRDDIIRDGIFNQYL 567

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A+ PT +I+ I   + SI P    + ++                         E  I  
Sbjct: 568 QAVPPTGSISYINHSTSSIHPIASKIEIRK------------------------EGKIGR 603

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           + Y          + +D  +  A A+EI    ++++ +   + +DQ  SL L+  D  + 
Sbjct: 604 IYYPA------PYMTNDNLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATT 657

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           + L+     AW  G+KT YY+R R   ++  + ++G 
Sbjct: 658 RDLNKAQIYAWRKGIKTLYYIRIRQ-QALSGTEVQGC 693


>gi|329121527|ref|ZP_08250151.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
 gi|327469442|gb|EGF14912.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
          Length = 730

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/750 (23%), Positives = 307/750 (40%), Gaps = 78/750 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +   Y K Q            E     ++       +         +     +  E 
Sbjct: 31  KEAV-QEYIKTQIEPSMMKFSTLEEKLKYLVDNNYYDEEILNRYSKT-FIREIYAIGKEY 88

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           DF F   +G    Y  Y L  +  +   E      +  A+ LA      E  A +    +
Sbjct: 89  DFKFRNLMGAMKFYTSYGLRTDDKKYYLETFTERAIMNALFLA---NGSEDLAKKLVGDI 145

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  + D++  I   +  +  L+K  GG+    T
Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD 
Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +     LFSP +V  ++     +  I  E Y
Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSPYDVYKVYGKPMTDISITKE-Y 324

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E    R +      I+A   ++ +  + FE+G+P+I ++D  N R+P +  G +  SNLC
Sbjct: 325 ENLL-RNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLC 383

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                   +   CNLGSIN+     + +         I  AV  LD
Sbjct: 384 SEIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMKDGK----NFGEMIGRAVEALD 439

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +  +     K+ N  + AIGLG M     L   HI Y +PEAV+  D      ++
Sbjct: 440 RVSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLATHHIYYDTPEAVDFTDMFFYATAY 499

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRL 744
           +A  AS  +A ++GA++ F  S +  G +               + E+ ++      ++ 
Sbjct: 500 YAFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNVPKTEKVKELFEKYNFYIPTQE 559

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L + +K  G+ N++ +A+APT +I+ +   + S+ P    + V+         V +
Sbjct: 560 DWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPA 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +++                             ++ K     A+E+ P  +I+ A+  Q
Sbjct: 620 YEIDD-----------------------------ENYKYYEKGAYEVGPDAIIDVAAAAQ 650

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K +DQA ++ L+   + + + L+  Y +A+     + YY+R R      +  L+G +   
Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR------QDVLEGSEKFE 704

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               + + N          +C    EC+ C
Sbjct: 705 EDSIIKNENKEVR------NCDGSEECQTC 728


>gi|237745665|ref|ZP_04576145.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229377016|gb|EEO27107.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 957

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 159/643 (24%), Positives = 274/643 (42%), Gaps = 79/643 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--EKRAVEFYNLLSS 348
           FA + +  ++L ++Y            +    RVA  LA  E  K  +K A EF   + +
Sbjct: 12  FAPQEISTEVLLEKYAKGDET----SAEEVMERVACALAEVEAPKSRKKYAEEFLWAMQN 67

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGL 400
             F+ +      +GT     L +CF+  V D +        GI+ AL + A   +  GG+
Sbjct: 68  G-FIPAGRVSSAAGTGLQTTLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGV 126

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA + GT   + G I ++KV + +   V   G R+GA  A L   H D+ 
Sbjct: 127 GYNFSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIL 186

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+ +++    ++ +  + N +  + D FM+ V  ++ + L    E +D     G  F+ 
Sbjct: 187 EFITVKQ----EQNQLSNFNVSVGVSDEFMRAVETDSDFELAHTAEPNDELKEKG-AFKR 241

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           A              V+ +I A  +W  ++   +    P + + D  N  +   +  V+ 
Sbjct: 242 ADGK----------WVYNRIKAREVWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIE 291

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNV 635
           ++N C E  L     +   C LGS+NL +       A   FD++ L    + AVR+LDNV
Sbjct: 292 ATNPCGEQPLP----DYGCCCLGSLNLTSFITAPFSAQPLFDFNLLTRVTKIAVRMLDNV 347

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +E+  +     R IGLG  G   AL +L I Y S +A  ++ E  + +   A 
Sbjct: 348 LTATKWPLEEQAREAAAKRRIGLGFTGLGDALIMLGIRYDSEKARILSAEIAKAMRDAAY 407

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           + S+ELA+ERG +       + +G F                    SRLP +E+K++++ 
Sbjct: 408 TGSIELAKERGGFPMLDVERYLEGGF-------------------VSRLP-EEMKEKIRK 447

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+  +IAPT TI+       S  I+P++   Y +     D +  N + V +   R
Sbjct: 448 HGIRNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPDGSRKN-YTVEDHAYR 506

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                  +     +D S          L     +A EI  +  +   +    +ID A S 
Sbjct: 507 -------VYRSMNNDVS---------KLPDYFVSALEISAIDHMLMVAAVAPYIDAAISK 550

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + + E    +    +Y +AW  GLK     R  +  +   S 
Sbjct: 551 TVNVAEDYPYEDFKNLYMEAWKKGLKGITTYRPNNVRTAILSV 593


>gi|254487728|ref|ZP_05100933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
 gi|214044597|gb|EEB85235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
          Length = 760

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/645 (24%), Positives = 257/645 (39%), Gaps = 87/645 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-L 373
             +  + R+A  LA  E   E     F+  L  F F+ +      SGT R   L +CF +
Sbjct: 30  TVEDTWRRIARDLAQTEDAPEVWEETFFEALEDFKFLPAGRITAGSGTARRVTLFNCFVM 89

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V + 
Sbjct: 90  GTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVLGVSADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM  V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRMFNMSVLITDPFMDAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADQSWDLQFG-----------------------------GKVYRTVQARDLWNRIMKAT 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +E   P + F D  N  +   +   + ++N C E  L         C LGSIN+    A+
Sbjct: 237 YEFAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPP----YGACLLGSINMARMVAD 292

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D   L   + TAVR++DNV+D++   +E  K      R IGLG+ G   AL 
Sbjct: 293 PFDKTAHLDVVALDKLVATAVRMMDNVVDVSKFPLEAQKAEAKAKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIG 727
           ++ + Y S EA    +  ++ I+  A  ASV+LA+E+GA+  F    +   G        
Sbjct: 353 MVGLRYGSDEAAAQTEAWLKAIARAAYLASVDLAKEKGAFPLFDADAYLASGTMQQ---- 408

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
                              ++++  +K  G+RN+   +IAPT TI+   G  S  I+P +
Sbjct: 409 -----------------MDEDVRSEIKEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVF 451

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y +  +  D +     +V+       +   M  DLK           +PD       
Sbjct: 452 AYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLK-------GDAPLPD----YFV 493

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
            A  + P+  ++  +  QKW+D + S  +   E  S      +Y  AW  G K     R 
Sbjct: 494 NAQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTYRP 553

Query: 906 RSATSVEKSTLKGVDGKLNAV-PVTDPNSSTHSLGIPSSCTSDTE 949
              T    S  +  D     V P   P+     + +        E
Sbjct: 554 NDVTGSVLSVSETTDNAPGEVAPEPMPSEGGEVVYMSEPLDRPEE 598


>gi|323341318|ref|ZP_08081562.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
 gi|323091195|gb|EFZ33823.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
          Length = 702

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/719 (23%), Positives = 296/719 (41%), Gaps = 71/719 (9%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R  L+K   +    ++ + +     +      E+    +E G     + E      + 
Sbjct: 4   AGRIRLDK--DQAALKLFLEDEVKPKIKRFEKKHEHVKWMVENGYYDEEVFERYTAEFID 61

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L   L+ +  F F  ++     Y +Y +  N  +I + + F  RV           E+ 
Sbjct: 62  GLDERLR-KAGFRFRTFMSAYKFYAQYAMKTNDQKIWL-EDFCDRVLACALTFADGDEEL 119

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A      +    F  +TP+  N+G  R  +  SCFL    DD+  I   +     L++  
Sbjct: 120 AEMIGEEIVHQRFQPATPSFLNAGRKRRGEFVSCFLLQTTDDMNSIGRMINSALQLSRIG 179

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G + + +RG GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H 
Sbjct: 180 GGVGVNLSNLRGRGASIKQIKGVASGVVPVMKLLEDSFSYSNQLGQRQGAGAVYLNVFHP 239

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DV EFL  +K   D++ R   ++    +PD F +   +N    LF P  V   +      
Sbjct: 240 DVLEFLGTKKENADEKIRVKTLSLGLVVPDKFYELARKNEEMCLFEPYTVEKEYHCPFSY 299

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            ++  E YE+  +   I+  +KISA  L  ++  +  E+G+P+I   D  N  +     G
Sbjct: 300 VDLTKE-YEKMVENPRIEK-KKISARMLEEEISKLQQESGYPYIVNIDTVNAGN--PIKG 355

Query: 578 VVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLC+EI        +N   E   +    S NL +    N         +++T V+
Sbjct: 356 KIVMSNLCSEILQVQEPSVINDEQEYVKLGRDISCNLGSTNIANLMKAPDFGRSVKTMVK 415

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  N  ++      N T  AIGLG MG  S L    I Y S EA+E        
Sbjct: 416 ALTEVSDESNIKSVPSVAHGNETAHAIGLGAMGLHSFLAQNKIRYGSKEALEFVSTYFML 475

Query: 690 ISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTS 742
           +++  + AS E+A E +  +  F  S +  G +       DS    ++ ++    +   S
Sbjct: 476 LNYWTLVASNEIAIEKKQMFDGFLESGYADGSYFEEYENADSTLHFSKTKELFKGIFIPS 535

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L++ V   G+ N N +A+APT +I+ I   + S+ P  + +  +          
Sbjct: 536 AKDWGRLRQNVMRHGLYNQNRLAVAPTGSISYINDTTASLQPIVRVVEERQ--------- 586

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                          E  I  + Y          + ++    + +A+++D   +I++ + 
Sbjct: 587 ---------------EKKIGKIYYPA------PGLSEETLPYYTSAYDLDMRCVIDTYAA 625

Query: 863 RQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            QK +DQ  SL L++                +E + + L  +   A+   +K+ YY+R+
Sbjct: 626 AQKHVDQGLSLTLFMRSKPSADLYEWKKGHKEELTTRDLTILRHYAFRKKIKSIYYVRT 684


>gi|149201158|ref|ZP_01878133.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
 gi|149145491|gb|EDM33517.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
          Length = 762

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/644 (25%), Positives = 264/644 (40%), Gaps = 88/644 (13%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QI   +Y      +     +  + R+A  LA+ E E       FY+ L  F F+ +    
Sbjct: 15  QIWNMKYRFRNGDAGDASVEDSWRRIARALAVAEAEPALWEERFYHALEDFKFLPAGRIT 74

Query: 359 FNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +GT     L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G
Sbjct: 75  AGAGTARKVTLFNCFVMGTVPDDMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAEVKG 134

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R 
Sbjct: 135 VSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARL 190

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  I D FM+ V  +  W L                                 KV
Sbjct: 191 RMFNLSVLITDAFMEAVKADGPWDLQFG-----------------------------GKV 221

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L      
Sbjct: 222 YHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLAYCETIAATNPCGEQPLPP---- 277

Query: 597 TAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGSINL    A       + D   L   +R AVR++DNV+D++   +        
Sbjct: 278 YGACLLGSINLARLVAEPFAAGARVDEAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQ 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+ G   AL ++ + Y S  AV+  +  +  I+  A  ASV+LA+E+GA+  F
Sbjct: 338 AKRRIGLGVTGLADALLMVGLRYGSDAAVQQTEAWLHAIARAAYLASVDLAREKGAFPLF 397

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                                RD    + T +    +++  V   G+RN+   +IAPT T
Sbjct: 398 D--------------------RDAYLASGTMQTMDADVRAAVAEHGIRNALLTSIAPTGT 437

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+   G  S  I+P +   Y +  +  D +     +++   Q  +W + M          
Sbjct: 438 ISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVIDYAVQ--MWRDRM---------- 485

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIY 889
                 +P+        A  + P   ++  +  QKW+D + S  +   E  S +    +Y
Sbjct: 486 --GDAPLPEH----FVNAQTLPPEDHVKMQAAAQKWVDSSISKTINCPEDISFEAFKNVY 539

Query: 890 RQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVT 929
            QAW +G K     R    + S  SV ++T K        VP T
Sbjct: 540 LQAWDLGCKGCTTYRPNAVTGSVLSVSETTDKAPGETRGDVPAT 583


>gi|255264072|ref|ZP_05343414.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
 gi|255106407|gb|EET49081.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
          Length = 757

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/661 (24%), Positives = 271/661 (40%), Gaps = 88/661 (13%)

Query: 300 ILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           I   +Y     +G+ I+   +  + R+A  LA  E        +FYN L  F ++ +   
Sbjct: 12  IWDMKYRFKDADGTPIDKTVEDTWTRIATSLASVEKTPSDWGEKFYNALEDFKYLPAGRI 71

Query: 358 LFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
              +GT+    L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + 
Sbjct: 72  TAGAGTKRSVTLFNCFVMGTVPDDMGGIFDHLREAALTMQQGGGIGYDFSTIRPKGAAVK 131

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R
Sbjct: 132 GVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAAR 187

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  + D FM+ V  +  W L                               + +
Sbjct: 188 LRMFNVSVLVTDPFMEAVKADQPWDLVF-----------------------------KGQ 218

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + AV LW K++   ++   P + F D  N  +   +V  + ++N C E  L     
Sbjct: 219 VCKTVQAVDLWNKIMQSTYDYAEPGVIFIDRINKANNLGYVEEIAATNPCGEQPLPP--- 275

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSN 650
               C LGSIN+     +   D   L        + TAVR++DNV+D +   ++  +   
Sbjct: 276 -YGACLLGSINMSRIVTDPFTDAAALDEAAMIDLVATAVRMMDNVVDASRFPLDAQRAEA 334

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+ G   AL ++ + Y S +A    ++ M  I+  A  ASV+LA+E+GA+  
Sbjct: 335 QAKRRIGLGVTGLADALLMVGLRYGSEDAARQTEQWMHAIARAAYLASVDLAKEKGAFPL 394

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F    +       D++  +                 D+++  ++T G+RN+   +IAPT 
Sbjct: 395 FDADKY----LQSDAMMAMD----------------DDVRDAIRTHGIRNALLTSIAPTG 434

Query: 771 TIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+   G  S  I+P +   Y +  +  D T     +V+               +K +  
Sbjct: 435 TISLYAGNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVD-------------YAVKLYRD 481

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
             G    +PD        A  + P+  +   +  QKWID + S  +   E  S +    +
Sbjct: 482 IHGADAELPDH----FVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFEDFKEV 537

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           Y +AW  G K     R    T    S L   + K   V      +    + +       T
Sbjct: 538 YMEAWDTGCKGCTTYRPNDVTG---SVLSVSEDKPAPVVAQSDEADQDIIYMTEPLDRPT 594

Query: 949 E 949
           E
Sbjct: 595 E 595


>gi|169827409|ref|YP_001697567.1| ribonucleoside-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168991897|gb|ACA39437.1| Ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 697

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/679 (25%), Positives = 310/679 (45%), Gaps = 67/679 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     ++EG   +   + M + D +       Y+ +F F  ++     YD Y +    
Sbjct: 49  EEKIRYLVDEGYYEKAFID-MYEMDFIKKLYKKAYDYNFRFPSFMSASKFYDSYAMKSRD 107

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
               +E  +   + +A+ LA   T   +R+VE   ++ +  +  +TPT  NSG +   +L
Sbjct: 108 GEEILEKYEDRIVIIALYLAQGNTVLAERSVE--AMMEA--YQPATPTALNSGKKARGEL 163

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCF  ++ D +  I   +     L++  GG+G + T +R LG  I     ++ GVIP  
Sbjct: 164 VSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKEILNRASGVIPVA 223

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R   ++T   IP +
Sbjct: 224 KLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIRLATLSTGIIIPSI 283

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F + + ++    LFSP ++  ++     E  I+ E Y    D  +I+  ++++A  L+ +
Sbjct: 284 FFELMKRDKDIVLFSPYDIFKVYGKRMSEISIS-EMYYELLDNPKIRKIKRLNARRLYTE 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV 599
           +    FE+G+P+  F D  N   P +++G V  SNLCTEI                E  +
Sbjct: 343 VKKAQFESGYPFEIFDDNVNDVHPLKNIGRVKMSNLCTEILQVQETSVITDQDQPNEYGL 402

Query: 600 ---CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655
              CNLGSI++  H A+   D++ L   I TA+ +L NV    +   +    K+N    +
Sbjct: 403 DVSCNLGSIDI--HAASKVNDFEAL---IDTAMHLLTNVSQMTHIKNVPSVAKANQLMHS 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           +GLG M     L    I Y S +++   D  ME ++++++ +S+E+A+E+   +  F+ S
Sbjct: 458 VGLGCMNLHGHLVTEGIMYGSKDSIHFMDRFMEAMNYYSLKSSMEMAKEKAETFYRFEDS 517

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAP 768
            +  G++    +    E      +     +P      W  LK+ V   G+ +S  +AIAP
Sbjct: 518 DYASGIYFDQYVNKTEEELSPAVLKALGNIPIITSKMWGLLKQDVMQYGLFHSYRLAIAP 577

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P  + + V+             L NE                   
Sbjct: 578 TGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTNE------------------- 618

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                          ++  A+++DP  LI+  +  QK +DQ  S+ LY  D  + ++L  
Sbjct: 619 ------------NSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMTLYVTDNWTTEQLAK 666

Query: 888 IYRQAWLMGLKTTYYLRSR 906
           +Y  AW+ G+K+ YY+R R
Sbjct: 667 VYIYAWVKGIKSVYYVRQR 685


>gi|52080344|ref|YP_079135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|52785723|ref|YP_091552.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|319645871|ref|ZP_08000101.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
 gi|52003555|gb|AAU23497.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348225|gb|AAU40859.1| NrdE [Bacillus licheniformis ATCC 14580]
 gi|317391621|gb|EFV72418.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
          Length = 700

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/726 (22%), Positives = 304/726 (41%), Gaps = 75/726 (10%)

Query: 214 PNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P + ++    ++           +E + + +             L  +       +  + 
Sbjct: 7   PKWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVFFHDLKEKIDYLIKNDYYEE 66

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
             L  S   F+ +       Y + F F  ++     Y+ Y L  N     +E  +     
Sbjct: 67  EFL--SRYTFEEIKEVFKEAYAKKFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISI 124

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYG 382
           VA+  A  + EK   A EF  ++ +  +  STPT  N+G  R  +L SCFL  V D L  
Sbjct: 125 VALFFANGDKEK---AKEFVRMMINQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLND 181

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G
Sbjct: 182 ISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMG 241

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F++   ++    +F
Sbjct: 242 QRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFIELAREDKAAYVF 301

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +  +  E ++  E Y+R  +        KI    +  K+  +  E+G+P+I 
Sbjct: 302 YPHTVYKAYGEHLDEMDM-NEMYDRLVEDPR-VKKEKIHPRKMLEKLAMLRSESGYPYIM 359

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNLGSINLLAH 610
           F+D  N      H+  V  SNLC+E+               +E  +   CNLGS+N+L  
Sbjct: 360 FQDNVNNVHANNHISKVKFSNLCSEVLQASQVSSYTDYGQEDEIGLDISCNLGSLNILNV 419

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N       L  T++ A   L +V +  N       KK+N   ++IGLG M     L  
Sbjct: 420 MKNKS-----LEQTVKLATDSLTHVSETTNITNAPAVKKANKAMKSIGLGAMNLHGFLAQ 474

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
            +I Y S EA + A+     ++F++I  S E+A+E+   Y  ++GS +  G +    +  
Sbjct: 475 NNIAYESEEARDFANTFFMMMNFYSIERSAEIAKEKGETYHGYEGSAYATGEYFEKYVTQ 534

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E        M+  ++  W +LK+ VK  G+ +S  + IAPT +I+ +   + S+
Sbjct: 535 DFSPKFEKVAKLFEGMHIPTKEDWKQLKQFVKEHGLYHSYRLCIAPTGSISYVQSSTASV 594

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  ++  +                                     +  +     
Sbjct: 595 MPIMERIEERTYGNSKTYYP-------------------------------MPGLAPSNW 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A+++D   +++  S  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT Y
Sbjct: 624 FYYKEAYDMDMFRVVDMISTIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLY 683

Query: 902 YLRSRS 907
           Y R++ 
Sbjct: 684 YARTKD 689


>gi|159045489|ref|YP_001534283.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
 gi|157913249|gb|ABV94682.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
          Length = 765

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/649 (24%), Positives = 259/649 (39%), Gaps = 90/649 (13%)

Query: 300 ILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           I   +Y F   +G+ I+   +  + R+A  LA  E++      +FY  L  F F+ +   
Sbjct: 12  IWDMKYRFKEADGTPIDVTVEDSWRRIARALASVESDPAAWEPKFYAALEDFKFLPAGRI 71

Query: 358 LFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
              +GT     L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + 
Sbjct: 72  TAGAGTERSVTLFNCFVMGTVPDDMGGIFEGLKEAALTMQQGGGIGYDFSTIRPKGAAVK 131

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R
Sbjct: 132 GVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPAR 187

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  + D FM+ V  +  W L                               + K
Sbjct: 188 LRMFNVSVLVTDAFMEAVKADGSWDLVF-----------------------------DGK 218

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V+  + A  LW K++   FE   P + F D  N  +   +   + ++N C E  L     
Sbjct: 219 VYHTVEARDLWNKIMKATFEYAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPP--- 275

Query: 596 ETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               C LGSINL    ++        D   L   + TAVR++DNV+D +   +E      
Sbjct: 276 -YGACLLGSINLSRLISDPFGEGAALDEAALEELVATAVRMMDNVVDASRFPLEAQAAEA 334

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+ G   AL ++ + Y S  A    +  +  I+  A  ASV+LA E+GA+  
Sbjct: 335 RAKRRIGLGVTGLADALLMVGLRYGSEAAARQTERWLHRIARAAYLASVQLATEKGAFPL 394

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+   + Q                      T +    +++  +   G+RN+   +IAPT 
Sbjct: 395 FEADAYLQSG--------------------TMQTMDADVRAAIAEHGIRNALLTSIAPTG 434

Query: 771 TIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+   G  S  I+P +   Y +  +  D +     +V+   Q  LW E           
Sbjct: 435 TISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVDYAVQ--LWREKFGD------- 485

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
                     DL      A  + P+  +   +  QKW+D + S  +   E  S  +   +
Sbjct: 486 ---------ADLPDHFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDISFAEFKDV 536

Query: 889 YRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           Y  AW  G K     R    + S  SV  S  K  + +   V       
Sbjct: 537 YMAAWDQGCKGCTTYRPNAVTGSVLSVSDSATKDSEAEKGEVKPVSEAR 585


>gi|326536371|ref|YP_004300812.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
 gi|299483452|gb|ADJ19546.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
          Length = 803

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/850 (20%), Positives = 322/850 (37%), Gaps = 123/850 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G    F+  ++  ++E +C G Q ++   +       + D ++ ++++ A++ 
Sbjct: 1   MKVIKSSGIAQDFDPAKIIQVLEWSCEGTQ-INPYELYERAQPFIKDQMTTAEIQRAIVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +E +Y  V +   +  LR+EV    +  P      + +           + G
Sbjct: 60  VAADSITVEESDYQFVASNLAMFGLRKEVYGQ-FDPPHLLAQVKAK----------TDLG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           V    + +     +   L   + ++RDF F Y G   + D+Y +    NG+  E PQ  F
Sbjct: 109 VYDPEIVQKYSAEEFEELNRYINHDRDFNFTYAGTMQMKDKYLVKDRSNGAIHETPQFTF 168

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M + M L  ++ + ++     +FY+ +S       TP +    T   Q SSC L    D 
Sbjct: 169 MLIGMCLHQEDEKSKRLQYVKDFYDAVSLKQISLPTPIMAGVRTPTRQFSSCVLIESGDS 228

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G     +R  G+ I     K  GV PF K  N    + +
Sbjct: 229 LDSINETSSAIISYVSKRAGIGVSGGAIRAEGSKIGPGEVKHTGVTPFWKHFNTGVHSCS 288

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L ++R   N   
Sbjct: 289 QGGIRKGSATCYWPGWHLECENLIVLKNNKGIEENRIRHMDYGIQLNNLMIERYLNNDYI 348

Query: 500 TLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM-LTMLFETG 557
           TLFSP+     L D +  + E+    YE+      ++  ++I A   ++ + +     T 
Sbjct: 349 TLFSPEINGGQLRDAFYADEELFRTMYEQLEATPAVRK-KRIKATEYFQSLFMPERANTA 407

Query: 558 HPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLN-----SSSEETAVCNLGS------- 604
             +    D  N      + +  V  SNLC EI L+     + ++       GS       
Sbjct: 408 RIYPQHVDNANNFGPWIRSIAPVKMSNLCAEIALHTMPLATYADRIIAVPEGSLIAFVEK 467

Query: 605 -----------------------------------------INLLAHFANNQFDY---DK 620
                                                    +  L+ +  + FD+   D+
Sbjct: 468 YGTKKAVLPTVENEFRRIGRVEDLKEGEISLNVQEDLGEIALCTLSAWVLDNFDWKNQDE 527

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           +    +  VR LDN++D   +  + A K    +R++G+G+  +   L      Y      
Sbjct: 528 VNRIGKVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAGWLAANASSYEDDH-- 584

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E + E  E + +  ++AS++LA+E+G       + + QG+ PID      +  D+L    
Sbjct: 585 ETSHELFERLQYALVNASIDLAEEKGPSPMLYKTKYGQGLLPIDWY---CKNVDDLVAPN 641

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              + W++ + R+   GMRN    A  P  T + +   +  ++ + + +  K +  G F 
Sbjct: 642 YV-MDWEDTRARLIKFGMRNVTLSAQMPCETSSQVSNSTNGVERALKPVSYKQSKDGSFN 700

Query: 801 VVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +   + +N +     W                              +A +      +  
Sbjct: 701 QIVPNYDINSVFYEFAW-----------------------------ESAAKFGNKGYLTK 731

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGK--------KLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  QK+ DQ+ SLN Y    S           +D +    +  G K  YY  +   +  
Sbjct: 732 MAIMQKFWDQSISLNTYYVPASYSNGKVPMSVMMDDMLFCFY-YGNKNMYYHNTDDGSGA 790

Query: 912 EKSTLKGVDG 921
           + S+    +G
Sbjct: 791 DDSSEAACEG 800


>gi|161529135|ref|YP_001582961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
 gi|160340436|gb|ABX13523.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
          Length = 884

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 178/845 (21%), Positives = 345/845 (40%), Gaps = 111/845 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIV-------EEACSGLQDVSSKIVLSETYKNMYDGL---SE 195
           +I    G + +FN  ++   +        +A  GL D  +  V+++  +  +      + 
Sbjct: 12  EIRKRSGAVTAFNKDKISNAIYKALAATSKADRGLADQLADNVVNKLVEQGFTSTRSPTV 71

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +  +       +   A +  R    KLR E +  +  K       +        
Sbjct: 72  EDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEKMKVLNLKALDPVSKKFDLNCLRV 131

Query: 256 FC-RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL------------Y 302
              RY+    K  ++      F+ V +   +    D  ++    Q+              
Sbjct: 132 LASRYLFRNGKNEIIESPTQMFERVAILVGI---GDLMYD---AQVFDKSGNTKQDVEEA 185

Query: 303 DRYFLHIN--GSRIEMPQAFF------------MRVA----MGLALKE----------TE 334
             Y   ++    + ++   FF            + +A    M ++ KE            
Sbjct: 186 KSYLEKLDAFDYKFKVGDYFFNKWHFRSLINHYVTLANKGHMKISFKELLTLLAAKKLDG 245

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
              +  E+++L+ S  F+ ++PT+ N+G R  QLS+CF+  + D +  I  +  + A++ 
Sbjct: 246 YADKITEYFDLMVSQDFLPNSPTMMNAGGRLGQLSACFVLGMQDGMEEIMKSTSDAALIF 305

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA    +E 
Sbjct: 306 KSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGANMGIIEA 365

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLHD 512
           WH DVE+F+  +   G       + N +  + + F   +    +  + L SP +      
Sbjct: 366 WHPDVEKFITNKTEPGV----LENFNVSVGVWEDFWHALVNTSDGNYVLRSPRDKK---- 417

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                    ++I+A  L   +    +++  P + F D  N  + 
Sbjct: 418 -----------------------PVKEINAHQLIDLIALSAWKSAEPGLIFFDQINKYNV 454

Query: 573 QQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTI 625
                   + ++N C E +L         CNLGSINL+           +FD+ +   TI
Sbjct: 455 FAKARQAPLRATNPCGEQSLYPYES----CNLGSINLVNLVKRQADGTYEFDWQRYEETI 510

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R   R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY S E  E+  +
Sbjct: 511 RKTTRFLDNIIDVNHYPVPEINVASKESRRIGLGVMGVADLLYKLRIPYNSKEGYELQSK 570

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E ++++++  SV LA+ RG +     + + +G  P+       +         +    
Sbjct: 571 LSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVAGYYEKPK--------ESHSYE 622

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L +++K  G+RN     +APT T++ I   S  ++P++  ++ K    G F   N  
Sbjct: 623 WDALVEKIKQYGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVGRFFYTNKI 682

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           +   LK+ +L+++ +++ +  + GS+  I+ IP  ++ +  TA +I     + +    Q 
Sbjct: 683 VEQVLKENNLYNDEILAKIADNYGSLKGIDEIPQWMQDVFVTAMDIHWSDHLMAQGVWQD 742

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKL 923
           WI  A +  + +    + + +   Y  A  +GLK     R  S    V   T +  +   
Sbjct: 743 WIGNAIAKTINMPYDVTAEDVKSAYLLAHEIGLKGITVYRDGSRHKQVLHMTSENAEKTF 802

Query: 924 NAVPV 928
           +  P 
Sbjct: 803 DVTPS 807



 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK- 88
           ++ KR+G VT+F+  KIS AI KA  A              +   L +  V +L++    
Sbjct: 12  EIRKRSGAVTAFNKDKISNAIYKALAATSKADRG-------LADQLADNVVNKLVEQGFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S     +EDIQD VE +L+ SG+  I + Y++YR ER  +R  +    +   + P  K  
Sbjct: 65  STRSPTVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEKMKVLNLKALDPVSKKF 124

Query: 149 MDD 151
             +
Sbjct: 125 DLN 127


>gi|15829012|ref|NP_326372.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089956|emb|CAC13714.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 711

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/704 (23%), Positives = 298/704 (42%), Gaps = 67/704 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y+   K  H  +   + +     ++     + L +      L  L  DL Y  +
Sbjct: 32  QAAHDYYESKIKP-HFRVFESFEKRIEFLVKNNYYEKSLIDQYTISQLKELN-DLAYSYN 89

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
             F  ++G+   Y+ Y L     + E  + F  R  M          ++A      +   
Sbjct: 90  HFFPSFMGILKFYNAYALKSFDGK-EYLENFEDRALMNALFLANGDFEKAKAILKEIMLK 148

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G  +  +  SC+L    D++  I  ++  +  L+K  GG+    T +R
Sbjct: 149 RFQPATPTFLNAGKAQRGEYVSCYLIRTEDNMESISRSITTSLQLSKRGGGVAVLLTNLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            LGA I     ++ G+IP +K+  D+    NQ G+R+GA   YL   H D+ +FLD ++ 
Sbjct: 209 ELGAPIKNIQNQATGIIPIMKILEDSFSYANQLGQRQGAGAVYLNIHHPDILQFLDSKRE 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    + D+  +    N    LFSP ++   +     +  I  E Y   
Sbjct: 269 NADEKIRIKSLSLGLVVTDIAFELAKNNEKLALFSPYDIQKEYKKPMSDISITQEYYNLL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +    K +  I+A  L+  +  + FE+G+P++ F D  N R+   +   +  SNLC+EI
Sbjct: 329 KNDKIKKTY--INARKLFTLIAELHFESGYPYLLFDDTVNRRNAHPN--RIVMSNLCSEI 384

Query: 589 TLNSSSEETAV------------CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
              S++ E +             CNLGS+N+     + +    +  S +  ++  L+ V 
Sbjct: 385 VQPSTASEYSADLSYTKVGDDISCNLGSLNIAKALESGR----EFKSLVANSIFALNQVS 440

Query: 637 DINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                +     +K N+ + AIGLG M     L    I Y S EA++  +     ++++A 
Sbjct: 441 RKADLSSAPSIEKGNNKNHAIGLGAMNLHGFLANNEIFYNSQEALDFTNMFFYAMAYYAF 500

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIG-----------LLAEVRDELAMNRTSRL 744
            AS EL+   G +  F+ + +  G +                  + ++ ++      S+ 
Sbjct: 501 EASQELSLIYGKFHGFEKTKFADGSYFEKYTKGDENKWKAKTKKVQDILEKYDFYIPSQK 560

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL +++K  G+ NS+ MAIAPT +I+ +   + S+ P    +  +         V +
Sbjct: 561 DWIELVEKIKKTGIANSHLMAIAPTGSISYLSSCTPSLQPVVAPVEARKEGKLGRVYVPA 620

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N                              ++ K     A+E+ P+ +I+ A+  Q
Sbjct: 621 YNLN-----------------------------SNNFKYYIEGAYEMGPIPIIDIAAEAQ 651

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + IDQA SL L+  D+ + + L+  Y  A+  G  + YY+R R 
Sbjct: 652 QHIDQAISLTLFLTDKATTRDLNKAYIHAFKKGCSSIYYVRVRQ 695


>gi|229552272|ref|ZP_04440997.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539682|ref|YP_003174181.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus Lc 705]
 gi|229314344|gb|EEN80317.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151358|emb|CAR90330.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 723

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/713 (23%), Positives = 298/713 (41%), Gaps = 101/713 (14%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +  + +   L YL     YE DF  +Y    L+ L +++     
Sbjct: 34  KEALQAFLTENVAPNTMKFASLQERLKYLVEHHYYEADFLKKYQPAFLEKL-NQFLTAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + +  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDYKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP  V   +       +I  E Y++ 
Sbjct: 272 NADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGKPFSYVDITKE-YDKM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGRIIMSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                  +               CNLGS N+     +  F       ++   VR L  V 
Sbjct: 388 MQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDF-----GHSVEAMVRALTYVT 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ +
Sbjct: 443 DHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTL 502

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA-MNRTSRLPWDE 748
            AS ++A+ER  ++ +F+ S +  G +    +         +VRD    ++  ++  W  
Sbjct: 503 KASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQA 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   S S+ P    +  +                
Sbjct: 563 LKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    + N      D    + +A++ID   +I+  +  Q+ +D
Sbjct: 608 ---------EKKIGTIYYPAPGLSN------DTMPYYQSAYDIDMRKVIDVYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  ++ L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|319942043|ref|ZP_08016362.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804427|gb|EFW01305.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 591

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/678 (27%), Positives = 293/678 (43%), Gaps = 94/678 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A  + +ERD  F+ LGL  L + Y +  +      PQ  F  VA           + A 
Sbjct: 1   MAVQMNFERDKLFDELGLMRLRESY-MRSSEK---SPQERFAFVAETF----GSNPEHAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCFLT + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASRHWLSFSTPILSFGRSKKGLPISCFLTYMEDSAEGLVDTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LKV +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHV--------RIRSADEKSVGVMPHLKVYDAACLAYRQGSTRRGSYAAFLDIDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+++RK TGD   +  +++    + D FM+++  +                      + 
Sbjct: 165 PFIEMRKPTGDQNMKALNLHHGVNLSDAFMEKIEASMR--------------------DS 204

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVGV 578
           +Y++          +V  K+SA  LW+++L M   TG P++ F D  N    S  +  G+
Sbjct: 205 SYDDTWELRHPSTHEVVAKVSARDLWQRILEMRMHTGEPYLVFIDTANRALPSWLKDKGL 264

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +H SNLCTEI L +S + TAVC L S+NL  +F   + +   +   +     VL   ID
Sbjct: 265 SIHGSNLCTEIFLPTSHDRTAVCCLSSLNL-EYFDEWKNNQQFITDAMELLDNVLQYFID 323

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                I +A+ S    R++GLG +GF + L    +P+ S  A  I  +    I      A
Sbjct: 324 HAPDQIARARYSAMRERSVGLGALGFHAYLQKKGVPFESAAAKSINKQVFRMIRTACAEA 383

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
             +L  ERGA      S   +                                       
Sbjct: 384 DKKLCAERGACPDAADSGVSR--------------------------------------- 404

Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ M++AP A+ + I  G S SI+P   N+Y +  +SG + + N FL  +L +  L 
Sbjct: 405 -RFSHWMSVAPNASSSLIMGGTSPSIEPYRANIYRQDTISGAYIMKNRFLKAKLAELGLD 463

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E + +DL  HDGSI + + IP D+K +  TA EID  W++E A+ RQ++IDQ QS+NL+
Sbjct: 464 TEEVWADLIAHDGSIQHRDDIPQDVKDVFKTAPEIDQRWIVELAADRQEFIDQGQSVNLF 523

Query: 877 LDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                S   L   +  AW  GLK+ YY RS      ++  +K    ++            
Sbjct: 524 FPPDVSIAYLHACHFLAWKKGLKSLYYNRSDKLRKADRVGVKAERKRIEDEIDMR----- 578

Query: 936 HSLGIPSSCTSDTECEVC 953
                  +   ++ C  C
Sbjct: 579 -------AVADNSTCLAC 589


>gi|312865007|ref|ZP_07725235.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099118|gb|EFQ57334.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 725

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/723 (22%), Positives = 296/723 (40%), Gaps = 90/723 (12%)

Query: 233 LTTVYKKPQKATHHEMQCLYP--EYFCRYIEEGVKARLLHESMM----------DFDLVY 280
           L    +  +    HE++      E F   I+  ++   + + ++          D   + 
Sbjct: 25  LHYDQEALEDYLQHEIKPKTKSFESFSNQIDYLIEHDYIDQDVLSAYSKEGNGIDKAFIQ 84

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
              +  Y+  F F  ++     Y++Y +  +  + +  + F  RV            + A
Sbjct: 85  ELFEEAYQYGFKFKSFMAAYKFYNQYAMKTDDLQ-QYLENFEDRVVFNALYLAAGNRELA 143

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
               + L S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  G
Sbjct: 144 RHLVDELISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRGINSALQLSRIGG 203

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G + + +R  G+ I        GV+P +K+  D+    NQ G+R GA   YL  +H D
Sbjct: 204 GVGVNLSNLRASGSPIKRIAHAFSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQD 263

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FL  +K   D++ R   ++    +PD + + +  N    LF+P  V   +       
Sbjct: 264 ILAFLSTKKENTDEKIRVKTLSLGLVVPDKYYELLKTNQPMYLFNPYHVERAYGRPFSYV 323

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +I  E Y++      I+    I+A  L +++  +  E+G+P+I   D  N  +     G 
Sbjct: 324 DITAE-YDKLVANPAIEKM-VINARELEQEISRLQQESGYPYILNIDSANRSN--PVKGR 379

Query: 579 VHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI                       CNLGS+N++    +  F       +I 
Sbjct: 380 IIMSNLCSEILQPQEPSTLNRDLTYQEVGTDISCNLGSMNMVNLLRSPDF-----GKSIE 434

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            AVR L  V D  +   +    K N  +  IGLG MG  +AL L  + Y S EA+E  D 
Sbjct: 435 YAVRALTTVTDSESIEEVPTVAKGNALYHTIGLGAMGLHTALALNGLNYDSKEALEFVDA 494

Query: 686 SMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAE------VRDELAM 738
               ++++++ AS ++A E +  +  F+ S +  G +    +            +    +
Sbjct: 495 FFLAMNYYSLKASHQIALEKKQVFHDFEASKYADGSYFDQYLQDDFHFDFPQVAKSFETI 554

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  S   W  LK+ V   G+ + N +A+AP  +I+ I   S S+ P  Q +  +      
Sbjct: 555 HLPSLEDWQALKEAVMADGLYHRNRLAVAPNGSISYINETSASLHPITQLIENRQ----- 609

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  +  + Y          + +D    + TA+++D   +I+
Sbjct: 610 -------------------EKKVGSIFYPA------PYLSNDTISHYKTAYDMDQRKIID 644

Query: 859 SASRRQKWIDQAQSLNLYL--------------DEP--SGKKLDFIYRQAWLMGLKTTYY 902
             ++ QK +DQ  SL L++              D P  + + L+ +   AW  G+K+ YY
Sbjct: 645 IYAQAQKHVDQGLSLTLFMRSKLPQGLYEWKKPDHPNLTTRDLNKLRNYAWTKGIKSLYY 704

Query: 903 LRS 905
           +R+
Sbjct: 705 VRT 707


>gi|71894416|ref|YP_278524.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           synoviae 53]
 gi|71851204|gb|AAZ43813.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           synoviae 53]
          Length = 724

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/679 (24%), Positives = 299/679 (44%), Gaps = 71/679 (10%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDL-KYERDFAFEYLGLQILYDRYFLH-INGSR-IE 315
            +E       +  ++    L  L   + KY   F   ++G+   ++ Y L   +GS+ +E
Sbjct: 62  LVENQYYEEEVVNNVTKAQLEELYQLIEKYNHRFP-SFMGVVKFFNSYCLKSFDGSKFLE 120

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT 374
                 +  A+ L  K+ E           + S  F  +TPT  N+G  +  +  SC+L 
Sbjct: 121 SYSERALMNALFLGGKDFE---SVKNILVEILSGRFQPATPTFLNAGKKQRGEYVSCYLL 177

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R  GA I    G++ GVIP +K+  D+
Sbjct: 178 RVEDNMESIARAVTTSLQLSKRGGGVALSLTNLREFGAPIKQIQGQATGVIPVMKILEDS 237

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +P++  +   
Sbjct: 238 FSYANQLGQRQGAGAVYLHAHHPDIMTFLDSKRENADEKIRIKSLSLGIVVPNITFELAK 297

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N    LFSP +V  ++ +   + ++  E Y    +    K F  + A   ++ +  + F
Sbjct: 298 NNEDMALFSPYDVEKVYGVPFSDIKVTEEYYNMLNNPKIRKTF--VKARKFFQTVAELHF 355

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------SEETAVCNL 602
           E+G+P++ F D  N R+   + G +  SNLC+EI  +SS              E   CNL
Sbjct: 356 ESGYPYLLFDDTVNDRN--PNAGRIVMSNLCSEIVQSSSLTEYDTDLTVKKLGEDISCNL 413

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+                ++  A++ LD+V    +          N  +RA+GLG M
Sbjct: 414 GSMNVDKLMNAGS----DFGKSVFYAIKSLDHVSRGCDLSCAPSINHGNRNNRALGLGAM 469

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                  +  + Y SPEA+E  +     +++HA  AS  LA+ER   Y +FK S +  G 
Sbjct: 470 NLHGFFAVNEVYYDSPEALEFTNLFFYALAYHAYKASNLLAKERNETYKNFKSSKYATGE 529

Query: 721 FPIDS-----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +               +  + E+  +  +   +++ W EL + +K  G+ NS+ +A+APT
Sbjct: 530 YFDKYTKCKSDLYTAKLPKVIELFKKHNVTLPTQIDWSELVESIKKYGLANSHVLAVAPT 589

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   + S+ P    + V+           ++ ++E                    
Sbjct: 590 GSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYSLAYKLDE-------------------- 629

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
                    ++ K     A+E+ P  +I+  ++ QK +DQA SL L++ D+ + + L+  
Sbjct: 630 ---------NNYKYYKDGAYELGPNPIIDIVAQAQKHVDQAISLTLFMNDKATTRDLNKA 680

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           Y +A+     + YY+R R 
Sbjct: 681 YIRAFKAKCSSIYYVRIRQ 699


>gi|313892094|ref|ZP_07825690.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313119486|gb|EFR42682.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/750 (22%), Positives = 306/750 (40%), Gaps = 78/750 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +   Y K Q            E     ++       +         +     +  E 
Sbjct: 31  KEAV-QEYIKTQIEPSMMKFSTLEEKLKYLVDNNYYDEEILNRYSKT-FIREIYAIGKEY 88

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           DF F   +G    Y  Y L  +  +   E      +  A+ LA      E  A      +
Sbjct: 89  DFKFRNLMGAMKFYTSYGLRTDDKKYYLETFTERAIMNALFLA---NGSEDLAKNLVGDI 145

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  + D++  I   +  +  L+K  GG+    T
Sbjct: 146 LSNRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLT 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD 
Sbjct: 206 NLREGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDT 265

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +     LFSP ++  ++     +  I  E Y
Sbjct: 266 KRENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSPYDIYKVYGKPMTDISITKE-Y 324

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E    R +      I+A   ++ +  + FE+G+P+I ++D  N R+P +  G +  SNLC
Sbjct: 325 ENLL-RNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLC 383

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                   +   CNLGSIN+     + +         I  AV  LD
Sbjct: 384 SEIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMKDGK----NFGEMIGRAVEALD 439

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +  +     K+ N  + AIGLG M     L   HI Y +PEAV+  D      ++
Sbjct: 440 RVSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLSTHHIYYDTPEAVDFTDMFFYATAY 499

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRL 744
           +A  AS  +A ++GA++ F  S +  G +               + E+ ++      ++ 
Sbjct: 500 YAFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNAPKTERVKELFEKYNFYIPTQE 559

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L + +K  G+ N++ +A+APT +I+ +   + S+ P    + V+         V +
Sbjct: 560 DWKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPA 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +++                             ++ K     A+E+ P  +I+ A+  Q
Sbjct: 620 YEIDD-----------------------------ENYKYYEKGAYEVGPDAIIDVAAAAQ 650

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K +DQA ++ L+   + + + L+  Y +A+     + YY+R R      +  L+G +   
Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVRIR------QDVLEGSEKFE 704

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               + + N          +C    EC+ C
Sbjct: 705 EDSIIKNENKEVR------NCDGSEECQTC 728


>gi|258508469|ref|YP_003171220.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus GG]
 gi|257148396|emb|CAR87369.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus GG]
 gi|259649781|dbj|BAI41943.1| ribonucleotide reductase alpha subunit [Lactobacillus rhamnosus GG]
          Length = 723

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/713 (23%), Positives = 298/713 (41%), Gaps = 101/713 (14%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +  + +   L YL     YE DF  +Y    L+ L +++     
Sbjct: 34  KEALQAFLTENVAPNTMKFASLQERLKYLVEHHYYEADFLKKYQPAFLEKL-NQFLTAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + +  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDYKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP  V   +       +I  E Y++ 
Sbjct: 272 NADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGKPFSYVDITKE-YDKM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGKIIMSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                  +               CNLGS N+     +  F       ++   VR L  V 
Sbjct: 388 MQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDF-----GHSVEAMVRALTYVT 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ +
Sbjct: 443 DHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTL 502

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA-MNRTSRLPWDE 748
            AS ++A+ER  ++ +F+ S +  G +    +         +VRD    ++  ++  W  
Sbjct: 503 KASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQA 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   S S+ P    +  +                
Sbjct: 563 LKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    + N      D    + +A++ID   +I+  +  Q+ +D
Sbjct: 608 ---------EKKIGTIYYPAPGLSN------DTMPYYQSAYDIDMRKVIDVYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  ++ L++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QGMAMTLFMRSTIPAGLYPWKDGRTNKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/625 (24%), Positives = 255/625 (40%), Gaps = 90/625 (14%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ I+   +  + R+A  LA  E + +    +FY  L+ F ++ +  
Sbjct: 11  QIWDMKYRLKEGDGTPIDASVEDTWARIAKSLASVEKDPKAWEPKFYKALNDFRYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTDRSVTLFNCFVMGTIPDTMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAVV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DV +F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVMDFITAK----SDAA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L    E                            
Sbjct: 187 RLRMFNMSVLITDPFMEAVKADTPWDLIWDGE---------------------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V R + A  LW  ++   +    P + F D  N  +   +V  + ++N C E  L    
Sbjct: 219 -VVRTVQARDLWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL     N        D ++L   +  AVR++DNV+D +   +E   + 
Sbjct: 276 --YGACLLGSINLARLVLNPFADAATIDDNELTELVGLAVRMMDNVVDASKFPLEAQAQE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +  + Y SPEA    +  M+ I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AVAKRRIGLGVTGLADALLMTGLRYGSPEAARQTEHWMKAIARAAYLASVDLAREKGAFP 393

Query: 710 SFKGSLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            F    +     +  +D                      ++++  ++  G+RN+   ++A
Sbjct: 394 LFDADKYLASGNMMQMD----------------------EDVRDAIREHGIRNALLTSVA 431

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  DLK 
Sbjct: 432 PTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG 484

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
                        +L      A  +  M  +   +  QKW+D + S  + + E    +  
Sbjct: 485 DA-----------ELPDYFVNAQTLPAMDHVRMQAAAQKWVDSSISKTINVPEDIDFQSF 533

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
             +Y  AW  G K     R    T 
Sbjct: 534 KDVYMAAWDQGCKGCTTYRPNDVTG 558


>gi|319891737|ref|YP_004148612.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161433|gb|ADV04976.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465094|gb|ADX77247.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 701

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 179/719 (24%), Positives = 297/719 (41%), Gaps = 77/719 (10%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L +  ++ Q  T H    L   +F       V     +    ++    L  
Sbjct: 27  FQLEKDQEALASYLEEIQDKTVHFDSELERLHFL------VDNHFYYNVFEEYSEAQLVE 80

Query: 284 DLKYERDFAF---EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKR 338
            + +  +  F    Y+     +  Y L  N     +E      M V+  LA       + 
Sbjct: 81  LIAFATEIPFRFASYMSASKFFKDYALKTNDKSQYLEDYHQHVMIVSFYLA---KGNVEL 137

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +    +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K  
Sbjct: 138 AKKLIQAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIG 197

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H 
Sbjct: 198 GGVAINLSKLRARGEAIKGIKGVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYLNIFHY 257

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DVEEFLD +K   D+  R   ++T   +P  F +   +   + +F+P  V   + +   +
Sbjct: 258 DVEEFLDTKKINADEDLRLSTISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYGVTLDD 317

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             I  E Y+R  +   I    K  A  +   +     ++G+P++ FKD  N      ++G
Sbjct: 318 INID-EYYDRLVENPNIMKKSK-DAREMLNMIAQTQLQSGYPYLMFKDNANRVHANSNIG 375

Query: 578 VVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLCTEI     +                 CNLGS+N++    +NQF       ++
Sbjct: 376 QIKMSNLCTEIFQLQETSVIHDYGVDDEIKRDISCNLGSLNIVNVMESNQF-----RDSV 430

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            T +  L  V D  N       KK+N    ++GLG+M     L   HI Y S EA + AD
Sbjct: 431 HTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNHISYESEEAKDFAD 490

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAM 738
                +++++I  S+++A+ER   +  F  S +  G +       D +    +V+   A 
Sbjct: 491 VFFMMMNYYSIERSMQIAKERGETFKDFDKSDYASGRYFERYTSEDFLPKSEKVKALFAN 550

Query: 739 N-RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +   +R  W  L+  V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + 
Sbjct: 551 HTIPTRDDWKVLQAEVEKYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNS 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +      FL                                      + +AF ID M LI
Sbjct: 611 ETFYPMPFL-------------------------------SPQTMWYYKSAFNIDQMKLI 639

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 640 DLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|199598383|ref|ZP_03211802.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
 gi|199590702|gb|EDY98789.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
          Length = 723

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 166/713 (23%), Positives = 298/713 (41%), Gaps = 101/713 (14%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +  + +   L YL     YE DF  +Y    L+ L +++     
Sbjct: 34  KEALQAFLTENVAPNTMKFASLQERLKYLVEHHYYEADFLKKYQPAFLEKL-NQFLTAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + +  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDE-TQYLEDYKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + +  NA   LFSP  V   +       +I  E Y++ 
Sbjct: 272 NADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGKPFSYVDITKE-YDKM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               +IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGKIIMSNLCSEI 387

Query: 589 TLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                  +               CNLGS N+     +  F       ++   VR L  V 
Sbjct: 388 MQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDF-----GHSVEAMVRALTYVT 442

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ +
Sbjct: 443 DHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTL 502

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELA-MNRTSRLPWDE 748
            AS ++A+ER  ++ +F+ S +  G +    +         +VRD    ++  ++  W  
Sbjct: 503 KASNKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQA 562

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK+ V   G+ + N MA+AP  +I+ I   S S+ P    +  +                
Sbjct: 563 LKEDVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ--------------- 607

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y    + N      D    + +A++ID   +I+  +  Q+ +D
Sbjct: 608 ---------EKKIGTIYYPAPGLSN------DTMPYYQSAYDIDMRKVIDVYAAAQQHVD 652

Query: 869 QAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q  ++ L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|299537050|ref|ZP_07050353.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298727291|gb|EFI67863.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 697

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 170/679 (25%), Positives = 306/679 (45%), Gaps = 67/679 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     ++EG   +   + M + + +       Y+ +F F  ++     YD Y +    
Sbjct: 49  EEKIRYLVDEGYYEKAFID-MYEMEFIKKLYKKAYDYNFRFPSFMSASKFYDSYAMKSRD 107

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368
               +E  +   + +A+ LA   T   +R+VE   ++ +  +  +TPT  NSG +   +L
Sbjct: 108 GEEILEKYEDRIVIIALYLAQGNTALAERSVE--AMMEA--YQPATPTALNSGKKARGEL 163

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCF  ++ D +  I   +     L++  GG+G + T +R LG  I     ++ GVIP  
Sbjct: 164 VSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKEILNRASGVIPVA 223

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R   ++T   IP +
Sbjct: 224 KLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIRLATLSTGIIIPSI 283

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F + + ++    LFSP ++   +     E  I+ + Y    D  +I+  ++++A  L+ +
Sbjct: 284 FFELMKRDKDIVLFSPYDIFKEYGKRMSEISIS-DMYYELLDNPKIRKIKRLNARKLYTE 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEE 596
           +    FE+G+P+  F D  N   P +++G V  SNLCTEI               +    
Sbjct: 343 VKKAQFESGYPFEIFDDNVNKVHPLKNIGRVKMSNLCTEILQVQETSIITDQDQPNDYGL 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655
              CNLGSI++ A      F      + + TA+ +L NV    +   +    K+N    +
Sbjct: 403 DVSCNLGSIDIHAASKVKDF-----GTLVDTAMHLLTNVSQMTHIKNVPSVAKANQLMHS 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           +GLG M     L    I Y S E+++  D  ME ++++++ +S+E+A+E+   +  F+ S
Sbjct: 458 VGLGCMNLHGHLVTEGILYGSRESIDFMDHFMEAMNYYSLKSSMEMAKEKAATFYRFEDS 517

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAP 768
            +  G +    I    E    + +     +P      W+ LK+ V   G+ +S  +AIAP
Sbjct: 518 DYASGSYFDQYINKAEEELSPVVLKALGNIPIITNKMWETLKQDVMQYGLFHSYRLAIAP 577

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + SI P  + + V+             L N                    
Sbjct: 578 TGSISYIRSCTASIAPCTERVEVRDYADSRTIYPMPHLTN-------------------- 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                      D   ++  A++++P  LI+  +  QK +DQ  S+ LY  D  + ++L  
Sbjct: 618 -----------DNSHLYVEAYDVNPYDLIDLYAASQKHVDQGISMTLYVTDNWTTEQLAK 666

Query: 888 IYRQAWLMGLKTTYYLRSR 906
           +Y  AW+ G+K+ YY+R R
Sbjct: 667 VYIYAWIKGIKSVYYVRQR 685


>gi|237748699|ref|ZP_04579179.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
 gi|229380061|gb|EEO30152.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
          Length = 963

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/640 (25%), Positives = 275/640 (42%), Gaps = 79/640 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--EKRAVEFYNLLSSFHF 351
           + +  ++L ++Y    N +     +    RVA  LA  E  K  +K A EF   L +  F
Sbjct: 22  QEISTEVLLEKYA-KGNET---SVEEVMERVAQALAEVEAPKNKKKYAEEFLWALQNG-F 76

Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGND 403
           + +      +GT     L +CF+  V D +        GI+ AL + A   +  GG+G +
Sbjct: 77  IPAGRVSSAAGTGLQTTLINCFVQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGVGYN 136

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + GT   + G I ++KV + +   V   G R+GA  A L   H D+ EF+
Sbjct: 137 FSSIRPRGAKVRGTGSSASGPISYMKVFDRSCETVESAGARRGAQMAVLNIDHPDIVEFI 196

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            +++    ++ +  + N +  + D FM+ V  +  + L    E ++     G        
Sbjct: 197 TIKQ----EQNQLSNFNVSVGVTDKFMQAVESDGDFELAHVAEPNNELKEKGS------- 245

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+R   +    V+ K+ A  +W  ++   +    P + + D  N  +   +  V+ ++N
Sbjct: 246 -YKRADGK---WVYSKVKARDIWDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIEATN 301

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L     +   C LGS+NL +       A+  FD++  A   + AVR+LDNV+  
Sbjct: 302 PCGEQPLP----DYGCCCLGSLNLTSFVTAPFSAHPLFDFNLFARVTKIAVRMLDNVLTA 357

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +E+  K     R IGLG  G   AL +L I Y S EA  ++ E  + +   A S S
Sbjct: 358 TKWPLEEQAKEAAAKRRIGLGFTGLGDALIMLGIRYDSEEARILSSEISKAMRDAAYSGS 417

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ++LA+ERGA+       + +G F                    SRLP +E+K +++  G+
Sbjct: 418 IDLAKERGAFPMLDVENYLKGGF-------------------VSRLP-EEMKAQIRKHGI 457

Query: 759 RNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+  +IAPT TI+       S  I+P++   Y +     D +  N + V +   R   
Sbjct: 458 RNSHLTSIAPTGTISLAFADNASNGIEPAFSWFYNRVKRMPDGSKKN-YTVEDHAYR--- 513

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
               I     +D S          L     +A EI  +  +   +    +ID A S  + 
Sbjct: 514 ----IYRSMGNDVS---------KLPDYFVSALEISAIDHMLMVAAVAPYIDAAISKTVN 560

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E    +    +Y +AW  GLK     R  +  +   S 
Sbjct: 561 VAEEYPYEDFKNLYMEAWKKGLKGITTYRPNNVRTAILSV 600


>gi|146322250|ref|YP_001174721.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis]
 gi|145968741|gb|ABQ00019.1| putative ribonucleotide reductase subunit alpha [Lactococcus
           lactis]
          Length = 718

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/716 (22%), Positives = 286/716 (39%), Gaps = 81/716 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF--DLVYLANDLKY 287
           RE L   Y   +   + +      E     I        +     +   + V       Y
Sbjct: 26  REAL-EEYLNTEIRDNLKTFDSIDEKLDYLISHDYIDESVLSIYGENNREFVKKLFIFAY 84

Query: 288 ERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
              F F  ++     Y++Y +  N     + + F  R               A +    L
Sbjct: 85  NYGFKFKSFMAAYKFYNQYAMKTNDLNYYL-ENFEDRAVFNALYLANGDRNLAHKILEEL 143

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + +
Sbjct: 144 ISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNLS 203

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EFL  
Sbjct: 204 NLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLST 263

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E Y
Sbjct: 264 KKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE-Y 322

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +     GEI+    I+A  L +++  +  E+G+P+I   D  N  +     G +  SNLC
Sbjct: 323 DTMVANGEIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTN--PVKGKIIMSNLC 379

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS+N++     N  +      +I  A+R L 
Sbjct: 380 SEILQPQEPSILNLDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRALT 434

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +      N  +  IGLG MG  + L L  I Y S EA+E  D     +++
Sbjct: 435 TVTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNY 494

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL----LAEVRDELAMNR--TSRLP 745
           +++ AS +++ E    + +F+ S +  G +    +       +E   ++  N    +   
Sbjct: 495 YSLKASHQISIEKNETFHNFEYSRYADGSYFDYYLAKKFHFTSEKVAKIFENILLPTIED 554

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +  +             
Sbjct: 555 WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQ------------ 602

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E  +  + Y          + +   + + TA+ +D   +I+  ++ Q+
Sbjct: 603 ------------EKKVGSIFYPA------PYLSNKTLRYYKTAYNMDQRKIIDIYAKAQQ 644

Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            IDQ  SL +++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 645 HIDQGMSLTVFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|116494954|ref|YP_806688.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei ATCC 334]
 gi|227535044|ref|ZP_03965093.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631446|ref|ZP_04674477.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105104|gb|ABJ70246.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus casei ATCC 334]
 gi|227187359|gb|EEI67426.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525911|gb|EEQ64912.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 723

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/708 (23%), Positives = 293/708 (41%), Gaps = 91/708 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +    +   L YL ++  YE DF  +Y    L+ L D++     
Sbjct: 34  KEALQAFLTENVAPNTMQFDSLADRLKYLVDNHYYEADFLNKYQPAFLEKL-DQFLSAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD +   +  NA   LFSP  V  ++       +I  E Y+  
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSVERVYGKPFSYVDITKE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGKIIMSNLCSEI 387

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                    N+  E   +    S NL +    N         ++   VR L  V D  N 
Sbjct: 388 MQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHSNI 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS +
Sbjct: 448 DVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKASNK 507

Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753
           +AQER  ++ +F+ S +  G +       +   + +        ++  ++  W+ LK  V
Sbjct: 508 IAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKTSV 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ + N MA+AP  +I+ I   S S+ P    +  +                     
Sbjct: 568 MKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ-------------------- 607

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E  I  + Y          + +D    + +A++ID   +I+  +  Q+ +DQ  ++
Sbjct: 608 ----EKKIGTIYYPA------PDLSNDTMPYYQSAYDIDMRKVIDVYAAAQQHVDQGMAM 657

Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 658 TLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|191638465|ref|YP_001987631.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BL23]
 gi|190712767|emb|CAQ66773.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           casei BL23]
 gi|327382497|gb|AEA53973.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei LC2W]
 gi|327385695|gb|AEA57169.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BD-II]
          Length = 723

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/708 (23%), Positives = 293/708 (41%), Gaps = 91/708 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +    +   L YL ++  YE DF  +Y    L+ L D++     
Sbjct: 34  KEALQAFLTENVAPNTMQFDSLADRLKYLVDNHYYEADFLNKYQPAFLEKL-DQFLSAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD +   +  NA   LFSP  V  ++       +I  E Y+  
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSVERVYGKPFSYVDITKE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGKIIMSNLCSEI 387

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                    N+  E   +    S NL +    N         ++   VR L  V D  N 
Sbjct: 388 MQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHSNI 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS +
Sbjct: 448 DVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLRASNK 507

Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753
           +AQER  ++ +F+ S +  G +       +   + +        ++  ++  W+ LK  V
Sbjct: 508 IAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKTSV 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ + N MA+AP  +I+ I   S S+ P    +  +                     
Sbjct: 568 MKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ-------------------- 607

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E  I  + Y          + +D    + +A++ID   +I+  +  Q+ +DQ  ++
Sbjct: 608 ----EKKIGTIYYPA------PDLSNDTMPYYQSAYDIDMRKVIDVYAAAQQHVDQGMAM 657

Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 658 TLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|314936970|ref|ZP_07844317.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655589|gb|EFS19334.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 713

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 174/714 (24%), Positives = 298/714 (41%), Gaps = 67/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD--FDLVYL 281
             L +  E L    ++    T +    +   ++   ++      +  +   +   +++  
Sbjct: 39  FNLEKDQEALNVYLEEISDKTIYFDSEIERLHY--LVDNHFYFNVFKKYSEEDLIEIIEF 96

Query: 282 ANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKR 338
           A  +    +F F  Y+     Y  Y L  N     +E        VA+ LA    E   +
Sbjct: 97  AKSI----NFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLADGNKE---Q 149

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +F   +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K  
Sbjct: 150 AKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIG 209

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H 
Sbjct: 210 GGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHY 269

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   +
Sbjct: 270 DVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDD 329

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I  E Y  +       + +K  A  +   +     ++G+P++ FKD  N      ++G
Sbjct: 330 IDI--EKYYDELVANPNVLKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIG 387

Query: 578 VVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T + 
Sbjct: 388 QIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMD 447

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  N       KK+N+   ++GLG+M     L    I Y S EA + A+     
Sbjct: 448 ALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMM 507

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTS 742
           +++++I  S+E+A+ER  AY  F  S +  G +       + +    +V++  A M   +
Sbjct: 508 MNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQFEKVKELFANMQIPT 567

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +    
Sbjct: 568 SEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYP 627

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL  E                                   + +AF  D M LI+  S 
Sbjct: 628 MPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLIST 656

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 657 IQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 709


>gi|256844763|ref|ZP_05550245.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613111|gb|EEU18318.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 674

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/678 (24%), Positives = 299/678 (44%), Gaps = 65/678 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 37  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNDYYDKKVLD-LYTAKFIKEIFKLAYAQ 94

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 95  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 151

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 152 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 211

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 212 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 271

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 272 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQ 331

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +    K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 332 NLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 389

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL   +  +V+ L+
Sbjct: 390 SEIAQVNTPSTYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALN 445

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 446 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 505

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
           HA   S +LA+  GA+  FK S +  G +    I          + E+  +  +   ++ 
Sbjct: 506 HAFKESNKLAETYGAFKGFKDSSYASGDYFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKE 565

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V +
Sbjct: 566 DWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPA 625

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           + +N+                             D+ +     A+E+ P  +I+  +  Q
Sbjct: 626 YKINK-----------------------------DNYEYYEKGAYEVGPNAIIDITAAAQ 656

Query: 865 KWIDQAQSLNLYLDEPSG 882
           K++DQ+ SL L++++ + 
Sbjct: 657 KYVDQSISLTLFVEDNAT 674


>gi|94985874|ref|YP_605238.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
 gi|94556155|gb|ABF46069.1| Ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
          Length = 649

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/680 (25%), Positives = 283/680 (41%), Gaps = 63/680 (9%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRI-E 315
            +E G     +       + V    +  Y   F F+ ++G Q  Y  Y     +GSR  E
Sbjct: 1   MVERGFWDGEMLARYRPEE-VKAVFNRAYSHRFRFQSFMGAQKFYAEYATKTPDGSRYLE 59

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT 374
             +     VA+  A    E    A+   + L    F+ +TPTL NSG  +  +L+SCFL 
Sbjct: 60  RYEDRMSMVALARAGGNAE---LALTLVDHLVRQTFVPATPTLMNSGKANTGRLTSCFLL 116

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I       A L+K  GG+G D + +R  G  +    G ++G     K+ + 
Sbjct: 117 QDCTDSLDSIMKTQHFAADLSKNGGGVGIDLSNLRARGESLRHLQGVTKGAAAVAKLFDV 176

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +Q G+R+GA    L   H D +E L  +K   D+  R   ++    IPD+FM+ V
Sbjct: 177 LFRYADQAGQRQGAAVVNLNVMHPDFQELLAGKKIATDEDARLKTLSICAVIPDVFMQAV 236

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +       P            + +   E              R++SA  L +++    
Sbjct: 237 RDDKDVYQVYPRSYEQATGRIFTDIDWDTEY--ASIVENPNIRKRRVSARQLLQEIALTQ 294

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLG---S 604
            E+G+P++ F    N  +P  +VG V  +NLC+EI   +         E A   +G   S
Sbjct: 295 GESGYPYLLFTGNANRANPVPNVGTVKMTNLCSEIMQPTLPSSFHPYGEEARDEIGLDVS 354

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    N      L   +R A+ +LD+V    N   +    ++N   R+IGLG MG 
Sbjct: 355 CNLASLHIGNALKSGDLGGVVRAAISMLDDVAQSTNITEVPAVARANREMRSIGLGAMGL 414

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA+   D   E + FHA  AS+ELA++    ++ F+GS +  G + 
Sbjct: 415 HGHLAEHGIAYGSPEALAFCDLFFEAVHFHARRASMELARDTGFVFAGFQGSRYQSGEYF 474

Query: 723 IDSIGLLAEVRDELA---------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                   E   +LA             +R  W +L   ++  G+ +S+ MAIAPT +I+
Sbjct: 475 APYTEREREPAQDLAPEVRAALQGAWLPTREDWRQLVSDIQRYGLAHSHVMAIAPTGSIS 534

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            +   + S+ P  + +  +++  G                                +I  
Sbjct: 535 YVANATASVMPITERVETRTSGKGK-------------------------------TIYP 563

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
           +  + +  +  +  A+++D   +I++ +  Q+ +DQ  S  L++    +   L  +Y  A
Sbjct: 564 MPGLNEQTEWFYEEAYDMDMRRVIDTVATIQRHVDQGISCTLFVRSNVTTADLARLYISA 623

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           +  GLK+ YYLR R AT  E
Sbjct: 624 YRKGLKSLYYLRQRRATVQE 643


>gi|83313545|ref|YP_423809.1| ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82948386|dbj|BAE53250.1| Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 781

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/654 (23%), Positives = 262/654 (40%), Gaps = 85/654 (12%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L    G+ ++   Q  + RVA  LA  E +       F+  +  F  + +  
Sbjct: 10  QIWDMKYRLKSAEGTALDGTIQDTWRRVARSLAAAEADPALWEERFFEAMEDFKLLPAGR 69

Query: 357 TLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  +GT R   L +CF +  +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 70  IISGAGTDRRVTLFNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+D ++  G    
Sbjct: 130 KGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKREAG---- 185

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D FM+ V ++  W L                               + 
Sbjct: 186 RLRMFNLSVLVTDPFMQAVKEDGPWELTF-----------------------------KG 216

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             ++ + A  LW K++   +    P + F D  N  +   +   +H++N C E  L +  
Sbjct: 217 VTYKSLPARELWNKIMRATYSYAEPGVIFIDRINRLNNLSYCEEIHATNPCGEQPLPA-- 274

Query: 595 EETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               VC LGS+NL            + D D+L   +R AVR++DNVID++ + +E+ +  
Sbjct: 275 --YGVCLLGSLNLARLVDRPFEDGARLDLDQLDRLVRVAVRMMDNVIDVSNYPLERHRHE 332

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL L    Y   +A+ + +  M  I   A  AS ELA+E+GA+ 
Sbjct: 333 AQAKRRIGLGITGLADALILCGARYGGAQAIRLTETWMAAIRRSAYLASTELAKEKGAFP 392

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +    +  G                        L  D + + ++  G+RN+   +IAPT
Sbjct: 393 LYDAEKYLAGE-------------------TIQSLDSD-VIEAIRANGIRNALLTSIAPT 432

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+      S  ++P +   Y +                 L++     E  +SD  Y  
Sbjct: 433 GTISLFADNVSSGLEPVFAFTYTRGV---------------LQKDGTRREEEVSDYAYRL 477

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                 E  P  L      A  + P   +   +  QK++D + S  + + E  S +    
Sbjct: 478 FRRQRGENAP--LPSYFVDALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFESFKD 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           +Y+QA+ +G K     R    T       K    +    P      +      P
Sbjct: 536 VYQQAYDLGCKGCTTYRPNDVTGAVLEVKKEARPENADEPELPLEKAQVKHSDP 589


>gi|301066518|ref|YP_003788541.1| ribonucleotide reductase subunit alpha [Lactobacillus casei str.
           Zhang]
 gi|300438925|gb|ADK18691.1| Ribonucleotide reductase, alpha subunit [Lactobacillus casei str.
           Zhang]
          Length = 723

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/708 (23%), Positives = 293/708 (41%), Gaps = 91/708 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +    +   L YL ++  YE DF  +Y    L+ L D++     
Sbjct: 34  KEALQAFLTENVAPNTMQFDSLADRLKYLVDNHYYEADFLNKYQPAFLEKL-DQFLSAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                            L  +    +  + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD +   +  NA   LFSP  V  ++       +I  E Y+  
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSVERVYGKPFSYVDITKE-YDNM 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                IK ++ I A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+EI
Sbjct: 331 VANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRAN--PIEGKIIMSNLCSEI 387

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                    N+  E   +    S NL +    N         ++   VR L  V D  N 
Sbjct: 388 MQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHSNI 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS +
Sbjct: 448 DVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKASNK 507

Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753
           +AQER  ++ +F+ S +  G +       +   + +        ++  ++  W+ LK  V
Sbjct: 508 IAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKISV 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ + N MA+AP  +I+ I   S S+ P    +  +                     
Sbjct: 568 MKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQ-------------------- 607

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E  I  + Y          + +D    + +A++ID   +I+  +  Q+ +DQ  ++
Sbjct: 608 ----EKKIGTIYYPA------PDLSNDTMPYYQSAYDIDMRKVIDVYAAAQQHVDQGMAM 657

Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++                D+ + + L+ +   A   G+K+ YY+R+
Sbjct: 658 TLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|76799234|ref|ZP_00781408.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|76585417|gb|EAO62001.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
          Length = 704

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/664 (23%), Positives = 273/664 (41%), Gaps = 54/664 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +       + ++   L++   +F +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDKIAYLLKYDYLEEAFLNKYRPEF-IEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F  ++     Y +Y L  N     + ++   RV           E+ A +    + S
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYL-ESIEDRVLFNALYFADGDEELATDLALEMIS 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +K
Sbjct: 209 REAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +    N    LFSP  +   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGVPFSYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                      KI+A  L  ++  +  E+G+P+I   D  N  +     G +  SNLC+E
Sbjct: 328 LVANP-NITKTKINARDLETEISKLQQESGYPYIINIDTANRTN--PVDGKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         N + E   +    S NL +    N         +I+T  R L  V D  N
Sbjct: 385 ILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSPDFGKSIKTMTRALTFVTDSSN 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  S 
Sbjct: 445 IEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDELAMN-RTSRLPWDELKKR 752
            +A+ER   +  F+ S +  G +         +    +V+   A +       W+ L+  
Sbjct: 505 NIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEAKDWENLRYA 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +A+AP  +I+ I   S SI P  Q +  +                    
Sbjct: 565 VMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ------------------- 605

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y    +        D    + +A+++D   +I+  +   + +DQ  S
Sbjct: 606 -----EKKIGKIYYPANGLAT------DTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLS 654

Query: 873 LNLY 876
           + L+
Sbjct: 655 MTLF 658


>gi|34580443|ref|ZP_00141923.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
 gi|28261828|gb|EAA25332.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
          Length = 573

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/651 (31%), Positives = 300/651 (46%), Gaps = 92/651 (14%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  Q  F RV+   A    E ++ A + Y  +S   FM +TP L N GT      SCFL 
Sbjct: 4   EDFQDLFARVSSYYA----ENKQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLN 59

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I     EN  LA   GG+G+ W  VR +   I    G S G+IPF+KV +  
Sbjct: 60  ETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSM 118

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRV 493
            +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R+  +++    I D FMK V
Sbjct: 119 TLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAV 178

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N  + L SP                               V  K+ A  LW K+LT  
Sbjct: 179 ENNTDFDLVSPATKK---------------------------VVNKVRARDLWVKLLTTR 211

Query: 554 FETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSI 605
            ETG P++ F D  N       ++    V  SNLC+EITL +  +      TAVC L S+
Sbjct: 212 IETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSL 271

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL  ++   + D + + S +     VL++ I+    T+ +AK S    R++GLG+MGF S
Sbjct: 272 NL-EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHS 330

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L +  +P  S  A     +  E+IS     AS+E+ +E+GA                  
Sbjct: 331 FLQMKKVPIESVMAKVWNKKIFEYISDETDKASIEIGKEKGACPD--------------- 375

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
                      A++  S                R SN  AIAPTA+I+ I G  S  I+P
Sbjct: 376 -----------ALDAGSNE--------------RFSNKTAIAPTASISVIAGNASPGIEP 410

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N +V+  ++G F V N  L   L+++   ++ + S +  H+GS+ ++  + ++ K++
Sbjct: 411 FAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQV 470

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYL 903
             TA+EID  WLIE AS R  +I QAQSLN++L     KK L+ I+ +AW  G+K+ YY 
Sbjct: 471 FKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYC 530

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           RS S    +K     V   +      D       L       +  EC  CQ
Sbjct: 531 RSTSIQRADK-----VSHDVLKADFKDLEEQNDKLAEAG---NHEECLACQ 573


>gi|293556437|ref|ZP_06675015.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601401|gb|EFF31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 625

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/647 (23%), Positives = 275/647 (42%), Gaps = 77/647 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y++Y +  N     + + F  RV           +  A +    L S  +  +T
Sbjct: 1   MAAYKFYNQYAMKTNDLEFYL-ENFEDRVVFNALYLGNGDKDLAFKLLEELISQRYQPAT 59

Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G  R  ++ SCFL  + D +  I   L     L++  GG+G + + +R +GA I
Sbjct: 60  PTFLNAGKKRRGEMVSCFLIDIDDSMLSIGRNLNSALQLSRIGGGVGVNLSNLRAMGAPI 119

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                 S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K   D++ 
Sbjct: 120 KEIANASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILNFLSTKKENADEKI 179

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E Y+       I
Sbjct: 180 RVKTLSLGLIVPDKYYELLKTNQPMYLFNPYHVERVYGIPFSYVDLTKE-YDNMVVNDTI 238

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +    I+A  L +++  +  E+G+P+I   D  N  +     G +  SNLC+EI      
Sbjct: 239 EK-TVINARELEQEISRLQQESGYPYIINIDTANRTN--PVKGKIIMSNLCSEILQPQEP 295

Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            +               CNLGS+N++    ++ F       +I  AVR L  V D  +  
Sbjct: 296 SKLNADLNYKQVGTDISCNLGSMNMVNLMKSSDF-----GKSIEYAVRALTTVTDQVHIE 350

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K N  +  IGLG MG  +AL L  + Y S EA+E  D     ++++ + AS ++
Sbjct: 351 EVPTVSKGNALYHTIGLGAMGLHTALALNGLDYESEEALEFVDAFFLAMNYYTLKASHQI 410

Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVK 754
           A E+  A+  F+ S +  G +    +    E + +        ++  +   W +LK+ + 
Sbjct: 411 AVEKSEAFHDFESSHYADGTYFDKYLEKDFEFQFDKVNEIFKQISLPTVSDWQQLKEDIM 470

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ + N +AIAP  +I+ I   S S+ P  Q +  +                      
Sbjct: 471 HDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQ--------------------- 509

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E  +  + Y          + +   + + TA+ +D   +I+  ++ Q+ IDQ  SL 
Sbjct: 510 ---EKKVGSIFYPA------PYLSNKTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMSLT 560

Query: 875 LYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 561 LFMRSVLPEGVYEWKSPGNSQLTTRDLNRLRNYAWTKGIKSLYYVRT 607


>gi|254449519|ref|ZP_05062956.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263925|gb|EDY88195.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 753

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/644 (25%), Positives = 264/644 (40%), Gaps = 94/644 (14%)

Query: 299 QILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ I+   +  + R+A  LA  E + +    +FY  L+ F ++ +  
Sbjct: 11  QIWDMKYRLKEGDGTPIDISIEDTWARIAKSLASVEKDPKAWEPKFYEALNDFRYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF + T+PD + GIF AL+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTDRSVTLFNCFVMGTIPDTMGGIFDALREAALTMQQGGGIGYDFSTIRPKGAVV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDAA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L    E                            
Sbjct: 187 RLRMFNMSVLITDPFMEAVKADKPWNLVWAGE---------------------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              R + A ALW  ++   +    P + F D  N  +   +V  + ++N C E  L    
Sbjct: 219 -TVRTVQARALWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL    +N        D  +LA  +  AVR++DNV+D +   +E   + 
Sbjct: 276 --YGACLLGSINLARLVSNPFTDTATIDDAELAELVGLAVRMMDNVVDASKFPLEAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL +  + Y S +A    +  M+ I+  A  +SV+LA+E+GA+ 
Sbjct: 334 AAAKRRIGLGVTGLADALLMTGLRYGSEDAARQTEAWMKAIARAAYLSSVDLAREKGAFP 393

Query: 710 SFKGSLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
            F    +     +  +D                      D+++  ++  G+RN+   ++A
Sbjct: 394 LFDADKYLASGNMMQMD----------------------DDVRDAIREHGIRNALLTSVA 431

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+   G  S  I+P +   Y +  +  D +     +V+       +   M  DLK 
Sbjct: 432 PTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG 484

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
                        +L      A  +  M  +   +  QKWID + S  + + E    +  
Sbjct: 485 DA-----------ELPDYFVNAQTLPAMDHVRMQAAAQKWIDSSISKTINVPEDIDFQSF 533

Query: 886 DFIYRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNA 925
             +Y  AW  G K     R    + S  SV   T   V    NA
Sbjct: 534 KDVYMAAWDQGCKGCTTYRPNEVTGSVLSVSGDTKPEVIADENA 577


>gi|51246679|ref|YP_066563.1| ribonucleoside-diphosphate reductase [Desulfotalea psychrophila
           LSv54]
 gi|50877716|emb|CAG37556.1| probable ribonucleoside-diphosphate reductase [Desulfotalea
           psychrophila LSv54]
          Length = 785

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 156/642 (24%), Positives = 275/642 (42%), Gaps = 84/642 (13%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFHF 351
           +L  RY+L  + G+ +E  +A   RVA  +A ++   +           +F+ ++    F
Sbjct: 73  VLARRYYLKDDAGNSLEDWKALAHRVAEAVAPEDATGKNEVTGIKQLRDDFFTMIYQLDF 132

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++P L N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G  ++ +R   
Sbjct: 133 LPNSPCLMNAGTEIGQLSACFVLPVEDSMDGIFTAIRNGALVHKTGGGTGYSFSRIRACN 192

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +  T+G + G + F  V +     + QGGKR+GA    L   H D+  F+  +    +
Sbjct: 193 ASVKSTHGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDIMAFISAK----E 248

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D+ + ++ N +  I DLFM  +  +  + L  P                           
Sbjct: 249 DQDKFNNFNFSVAITDLFMAALEADKEYDLIEPSTGE----------------------- 285

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V  +++AV ++ K++ + +  G P + F D  N  +    +G   ++N C E  L 
Sbjct: 286 ----VMGQLNAVEVFAKIVDLAWHNGEPGVLFIDAANRDNTTPQLGDFEATNPCGEQWLL 341

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL     N++ DY +L   ++TA   LDNVID N   I +  +   
Sbjct: 342 PYES----CNLGSINLGNFVKNDEVDYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTL 397

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MG    L  L IPY S E   +A E M+FI       S +LA+E+GA+ ++
Sbjct: 398 KTRKIGLGIMGLHDLLIQLAIPYGSEEGRLLAAEVMQFIRDRCEEQSRKLAEEKGAFPAY 457

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
              +    ++P                                    RN+   +I PT T
Sbjct: 458 DAEI---NLYPA----------------------------------RRNAALTSIQPTGT 480

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           ++ I   +   +P +  + +K  M GD   +VN       +++  + + ++  +    G+
Sbjct: 481 VSMIADCASGCEPYFSIVMMKHVMDGDRLLMVNKHFEKIAREQGFYSDDLMVKV-AESGT 539

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLD-EPSGKKLDFI 888
           +     IP+  ++   TA +I P   I   +  Q   +D + S  + L    + + + + 
Sbjct: 540 VVGHAEIPEKWQEAFRTAQDISPEDHIRMQAILQNSGVDSSISKTINLPKTATREDVKYS 599

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           Y   + +G K     R  S      +T +       +  V++
Sbjct: 600 YISGYKLGCKGLTVYRDGSRDDQVLNTTEQSRASEKSAMVSE 641


>gi|254459677|ref|ZP_05073093.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2083]
 gi|206676266|gb|EDZ40753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 762

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/646 (23%), Positives = 260/646 (40%), Gaps = 86/646 (13%)

Query: 299 QILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y F   +G+ I+   +  ++R+A  LA  E + E    +FY  L  F ++ +  
Sbjct: 11  QIWDMKYRFKEADGTPIDATVEDSWVRIAKDLAKVEKDPEHWEEQFYAALEDFKYLPAGR 70

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
               +GT     L +CF +  +PD + GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 71  ITAGAGTARNVTLFNCFVMGAIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAGV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  
Sbjct: 131 KGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAA 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +A W L    E                            
Sbjct: 187 RLRMFNVSVLITDPFMEAVKADAEWDLEFDGE---------------------------- 218

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V+R + A+ LW K++   ++   P + F D  N  +   +   + ++N C E  L    
Sbjct: 219 -VYRTVRALELWNKIMQGTYDYAEPGVIFIDRINKANNLGYCETIAATNPCGEQPLPP-- 275

Query: 595 EETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                C LGSINL          +   D   L   + TAVR++DNV+D +   ++   + 
Sbjct: 276 --YGACLLGSINLARLVPNPFEVDAALDVSALNELVATAVRMMDNVVDASKFPLDAQARE 333

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+ G   AL ++   Y S EA    D+ +  I+  A  ASV+LA+E+GA+ 
Sbjct: 334 AAAKRRIGLGVTGLADALLMVGQRYGSEEAARQTDQWLHAIARAAYLASVDLAKEKGAFP 393

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                      D    +       ++++  ++  G+RN+   +IAPT
Sbjct: 394 LFDA--------------------DAFLASGAMLDMDEDVRDAIREHGIRNALLTSIAPT 433

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+   G  S  I+P +   Y +  +  D +     +V+   Q  +W +          
Sbjct: 434 GTISLYAGNVSSGIEPVFAYAYSRKVLQKDGSRTEEEVVDYAVQ--MWRDKFGDK----- 486

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +L      A  + P+  +   +  QKW+D + S  +   E  +      
Sbjct: 487 -----------ELPDYFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDIAFDDFKE 535

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +Y +AW  G K     R    T    S  +        +  TD   
Sbjct: 536 VYMEAWDSGCKGCTTYRPNDVTGSVLSVSEDKKDAPEVIANTDAEP 581


>gi|228475303|ref|ZP_04060027.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
 gi|228270679|gb|EEK12093.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
          Length = 701

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 174/714 (24%), Positives = 298/714 (41%), Gaps = 67/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD--FDLVYL 281
             L +  E L    ++    T +    +   ++   ++      +  +   +   +++  
Sbjct: 27  FNLEKDQEALNVYLEEISDKTIYFDSEIERLHY--LVDNHFYFNVFKKYSEEDLIEIIEF 84

Query: 282 ANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKR 338
           A  +    +F F  Y+     Y  Y L  N     +E        VA+ LA    E   +
Sbjct: 85  AKSI----NFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLADGNKE---Q 137

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +F   +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K  
Sbjct: 138 AKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIG 197

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H 
Sbjct: 198 GGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHY 257

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   +
Sbjct: 258 DVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDD 317

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +I  E Y  +       + +K  A  +   +     ++G+P++ FKD  N      ++G
Sbjct: 318 IDI--EKYYDELVANPNVLKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIG 375

Query: 578 VVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T + 
Sbjct: 376 QIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMD 435

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  N       KK+N+   ++GLG+M     L    I Y S EA + A+     
Sbjct: 436 ALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMM 495

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTS 742
           +++++I  S+E+A+ER  AY  F  S +  G +       + +    +V++  A M   +
Sbjct: 496 MNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYKSQEFVPQFEKVKELFANMQIPT 555

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +    
Sbjct: 556 SEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL  E                                   + +AF  D M LI+  S 
Sbjct: 616 MPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLIST 644

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 645 IQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|121592862|ref|YP_984758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
 gi|120604942|gb|ABM40682.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
          Length = 811

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/663 (23%), Positives = 260/663 (39%), Gaps = 81/663 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF           +  F RVA  LA  E E  ++A+E  F + L +     
Sbjct: 17  ISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G        I+ AL+E A   +  GG+G D++
Sbjct: 73  GRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 133 RIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFITA 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD FM+ V Q+  W L             G E +    + 
Sbjct: 193 KRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGA-------APGAELQAQGAHQ 241

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 242 RADGQ----WVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNPC 297

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDI 638
            E  L         C+LG I L     N         FD+D     + T VR LDNV+D+
Sbjct: 298 GEQPLPP----YGCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLDV 353

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  AS
Sbjct: 354 TFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYRAS 413

Query: 699 VELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           VELA+E+GA+  F    +  +G F                    SRLP D ++K ++  G
Sbjct: 414 VELAKEKGAFPKFDADGYLAKGTF-------------------ASRLPAD-IQKAIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +   R  
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSK-SEYVVEDYAWRLY 512

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G + +       L     +A ++     +      Q ++D A S  +
Sbjct: 513 ---------KTLGGDVNH-------LPAYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E         +Y QAW  GLK     R  S                 + P  +P   
Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616

Query: 935 THS 937
              
Sbjct: 617 FDP 619


>gi|293570203|ref|ZP_06681273.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609716|gb|EFF38976.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 718

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/709 (22%), Positives = 284/709 (40%), Gaps = 80/709 (11%)

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF--DLVYLANDLKYERDFAF- 293
           Y   +   + +      E     I        +     +   + V       Y   F F 
Sbjct: 32  YLNTEIRDNLKTFDSIDEKLDYLISHDYIDESVLSIYGENNREFVKKLFIFAYNYGFKFK 91

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
            ++     Y++Y +  N     + + F  R               A +    L S  +  
Sbjct: 92  SFMAAYKFYNQYAMKTNDLNYYL-ENFEDRAVFNALYLANGDRNLAHKILEELISQRYQP 150

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  R  ++ SCFL  + D +  I   +     L++  GG+G + + +R  G+
Sbjct: 151 ATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNLSNLRATGS 210

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EFL  +K   D+
Sbjct: 211 PIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLSTKKENADE 270

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    +PD + + +  N    LF+P  V  ++ +     ++  E Y+   D G
Sbjct: 271 KIRVKTLSLGLVVPDKYYELLKTNEPMCLFNPYHVERVYGIPFSYVDLTKE-YDTMVDNG 329

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           EI+    I+A  L +++  +  E+G+P+I   D  N  +     G +  SNLC+EI    
Sbjct: 330 EIEK-TVINARELEQEISRLQQESGYPYILNIDTANRTN--PVKGKIIMSNLCSEILQPQ 386

Query: 593 SSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
                              CNLGS+N++     N  +      +I  A+R L  + D   
Sbjct: 387 EPSILNPDLSYKKVGTDISCNLGSMNMV-----NLMEAKDFGKSIEYAIRALTTITDRGA 441

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++++++ AS 
Sbjct: 442 ISEVPTVANGNSLYHTIGLGAMGLHTVLALNSIDYESDEALEFVDAFFLAMNYYSLKASH 501

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGL----LAEVRDELAMNR--TSRLPWDELKKR 752
           ++A E    + +F+ S +  G +    +       +E   ++  N    +   W  LK+ 
Sbjct: 502 QIAIEKNETFHNFEYSRYADGSYFDYYLAKEFHFTSEKVAKIFENILLPTIEDWQLLKEN 561

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ + N +AIAP  +I+ I   S S+ P  Q +  +                    
Sbjct: 562 VMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQ------------------- 602

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  +  + Y          + +   + + TA+ +D   +I+  ++ Q+ IDQ  S
Sbjct: 603 -----EKKVGSIFYPA------PYLSNKTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMS 651

Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 652 LTLFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|20090518|ref|NP_616593.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
 gi|19915544|gb|AAM05073.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
          Length = 558

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/621 (25%), Positives = 274/621 (44%), Gaps = 100/621 (16%)

Query: 301 LYDRYFL---HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L  RY        G   E       RVA  ++  E E     +EF +L+    F+ S+PT
Sbjct: 19  LKARYLREGEKGWGDICE-------RVARAISTDEDEY----LEFKDLMVRKIFVPSSPT 67

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+GT   QL++CF+  V D +  IF AL+  A++ K  GG G +++ VR  G+H    
Sbjct: 68  LMNAGTELGQLAACFVVPVKDSVEEIFDALKTAALIQKTGGGSGFNFSRVRPKGSHALCV 127

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           +G + G I F+++ N+    + Q G+R+GA    L+  H D+  F+  +   G       
Sbjct: 128 DGVASGPISFMRLFNEATEVIKQFGRRRGANIGILDVSHDDIIPFIRAKHVEGS----FR 183

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           + N +  + D F + V   +   +++P   + + D+                        
Sbjct: 184 NFNLSVMVRDAFFRLVEAGSTEEVWNPRTGATVGDV------------------------ 219

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
                   + +++  ++  G P + F D  N  +    +G + ++N C E  L       
Sbjct: 220 --------FSEIVEGIWRNGEPGVLFYDRINRDNFTPGLGDITATNPCGEEPLLPYES-- 269

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGS+NL    A+ + ++D L  T   AVR LDN IDIN + + +  ++    R IG
Sbjct: 270 --CNLGSLNLSLFVADGKINWDFLRETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIG 327

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MGF   L  L + Y S EAVE+A++ ME I++ A+  S +LA E+G +  ++ S+W+
Sbjct: 328 LGVMGFHDMLLKLGLSYDSTEAVELAEKLMEQINWAAVRESRKLAAEKGPFPEYEKSIWE 387

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                                   MRN+   AIAPT TI+ + G
Sbjct: 388 LS--------------------------------------MRNATLTAIAPTGTISILAG 409

Query: 778 VSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSIGNI 834
            S  I+P +  +Y +   +  +F +V+       K R  +     ++  +  H G++ +I
Sbjct: 410 CSAGIEPVFSWVYRRTRTVGKEFLLVHPLFEAHFKPRLSESDYNELLEHVYAH-GTLQDI 468

Query: 835 ER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYR 890
           +    +P++ KK+  +A +I     I+  +  Q+      S  + +   +GK  ++    
Sbjct: 469 DDPEIVPENEKKLFRSALDIGWKTHIDIQAAFQRHCHAGISKTINMPVDAGKEDIEQALI 528

Query: 891 QAWLMGLKTTYYLRSRSATSV 911
            AW  GLK     R+ S   V
Sbjct: 529 YAWKQGLKGITIYRTGSRQYV 549


>gi|85726185|gb|ABC79615.1| ribonucleotide reductase alpha subunit [Borrelia hermsii DAH]
          Length = 690

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/706 (23%), Positives = 301/706 (42%), Gaps = 80/706 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  +  +  P +  H+ +   LY +++  Y E  +          +F             
Sbjct: 35  KAKSLRFSNPNERMHYLIDNNLYEDFYKNYSEAQILEIYKLVEFENFKFK---------- 84

Query: 290 DFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
                Y+     Y  Y L +NG + +E  +   + V++ LA    E    A++  + +  
Sbjct: 85  ----SYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---LALKLASEMIK 137

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G R   +L SCFL  V D L  I   +     L+K  GG+  + + +
Sbjct: 138 QRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNI 197

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K
Sbjct: 198 RARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKK 257

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   Q   +  F+P  +      +  E +   E Y+ 
Sbjct: 258 INADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEIDFDLE-YDL 316

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A      + ++I A  +  ++  + FE+G+P+I ++  CN+ +P + +G +  SNLCTE
Sbjct: 317 LASNP-NILKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKIKMSNLCTE 375

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  C LGS+N++    +N         T+  A++ L +V
Sbjct: 376 IFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIVNVVNSN------FEHTVDIAMQALTSV 429

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D           K+N+ + A+GLG+M     L    IPY S EA++        ++F++
Sbjct: 430 CDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTFFMLLNFYS 489

Query: 695 ISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           I +S+ +A+     +  FK S +  G +    +      + E+       +    +  W+
Sbjct: 490 IKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIKIPLKSDWE 549

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V+  G+ ++  +A+APT +I+ I   + S+ P  + +  +   +        +L 
Sbjct: 550 SLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYYPMPYLS 609

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E                                     +A+ +D   LI+  S  Q+ +
Sbjct: 610 KENAL-------------------------------FFKSAYYMDMRKLIDLISEAQRHV 638

Query: 868 DQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQ  S  LY  +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 639 DQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 684


>gi|70727161|ref|YP_254077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447887|dbj|BAE05471.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 701

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/716 (24%), Positives = 296/716 (41%), Gaps = 73/716 (10%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
                LE++  + +     + ++  +      Y   F +Y EE +            ++ 
Sbjct: 35  ALAVYLEEIHDKTIY-FDSEIERLHYLVDNNFYFNVFDKYSEEDL-----------VEIT 82

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE 336
             A  +    +F F  Y+     Y  Y L  N     +E        VA+ LA      +
Sbjct: 83  EFAKSI----NFEFASYMSASKFYKDYALKTNDKSQYLEDYNQHVAIVALYLA---DGNK 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++A +F   +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 136 QQAKQFILAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + ++  E Y          V +K  A  +   +     ++G+P++ FKD  N      +
Sbjct: 316 DDIDL--EKYYDDMVANPNIVKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSN 373

Query: 576 VGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI        +N    E  +    S NL +    N  +  K+  ++ T 
Sbjct: 374 IGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMETGKIKDSVHTG 433

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       +K+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 434 MDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFF 493

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNR 740
             +++++I  S+E+A+ER   Y  F+ S +  G +         E + E        ++ 
Sbjct: 494 MMMNYYSIERSMEIAKERGEVYQDFEQSDYASGKYFEFYTSQEFEPKFEKVKRLFDHIDI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 554 PTAKDWKALQEQVQQHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL  E                                   + +AF  D M LI+  
Sbjct: 614 YPMPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLI 642

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 ATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|325973167|ref|YP_004250231.1| ribonucleoside-diphosphate reductase, subunit alpha [Mycoplasma
           suis str. Illinois]
 gi|323651769|gb|ADX97851.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           suis str. Illinois]
          Length = 662

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/685 (23%), Positives = 306/685 (44%), Gaps = 65/685 (9%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
           +  + +  E     ++E      L E   +  +  LA  +         Y+ +   ++ +
Sbjct: 7   YSSKKIGYERIKWLVQEDYYFPSLLEKYTEEQINQLAEKVYSYSHTWKSYISISKFFESF 66

Query: 306 FLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            L  N     +E  +   + V++ L        K A E  +L++   +  +TPT  NSG 
Sbjct: 67  ALKSNCGNFILESYEDRVIVVSLFLG---DGNFKLANEIADLITRQVYQPATPTFSNSGK 123

Query: 364 RH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           +   +L SCFL    D +  I   +  +  L+K  GG+  + + +RG GA I   +  + 
Sbjct: 124 KRSGELVSCFLLETEDSINSINYIIATSMQLSKIGGGVAVNLSKLRGRGASIKKIDSTAS 183

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P LK+  +     +Q G R+G+  AYL  +H D+ +F+D +K   D++ R   ++  
Sbjct: 184 GVLPVLKILENVFDYADQLGMRRGSGVAYLNIFHFDLIDFIDCKKINADEKSRIQTLSIG 243

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             IPD F++  T+N  + +F P+ +   + +   +  +  E Y++ A   +  + +++SA
Sbjct: 244 LIIPDKFLQLATENKNFFIFEPNTIYQKYKVLLSDLNM-NEWYDKLAADKD-ILKKELSA 301

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
             +  ++  + FE+G+P++ + D  N + P + +G +  SNLCTEI     S        
Sbjct: 302 RNVLTRIAQIQFESGYPYVIYIDNANKQHPLRGLGTIKMSNLCTEIFQLQESSTIGDYGD 361

Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKS 649
                    CNL S+NL+            L   I  ++R L  V D  +       +K+
Sbjct: 362 EDQIRYDVSCNLASLNLVNLLEEK-----DLEKVIDISMRALTAVSDLTSIKNAPSIRKA 416

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAY 708
           N + R++GLG++ F   L   ++ Y  PE +E AD     I+++++ AS  +A+E    +
Sbjct: 417 NESFRSVGLGVLNFTGVLLKNNLAYDDPEVLEFADSLFSAINYYSLLASSNIAKEKNKKF 476

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSN 762
            +F+ S +  G +    +    E + E        +   S   W +LK++V+  G+ N+ 
Sbjct: 477 HNFELSDYANGSYFDQYLNNSFEPKSEKVKELLKNIKVPSPEDWAKLKEKVQRDGLYNAY 536

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPT +I+ +   + SI P   ++  +   +        FL  E +           
Sbjct: 537 RLAIAPTQSISYLQSATASIQPIISSIETRLYGNSMTYFPMPFLTKENEH---------- 586

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-S 881
                                ++ +A++ID   LI+ ++  QK IDQ  S  LY+    +
Sbjct: 587 ---------------------LYKSAYQIDQRKLIDVSATIQKHIDQGISTILYVTNNST 625

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSR 906
            + L  +Y  A   GLK+ YY+R++
Sbjct: 626 TRDLVKLYLYAHHKGLKSLYYVRTK 650


>gi|203288310|ref|YP_002223360.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
 gi|201085530|gb|ACH95103.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
          Length = 707

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/699 (24%), Positives = 306/699 (43%), Gaps = 79/699 (11%)

Query: 237 YKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
           ++ P K  H+ +   LY +++ +Y E+ +          +F                  Y
Sbjct: 59  FENPNKRMHYLIDNNLYEDFYQKYSEDQILEIYKAVEGEEFKFK--------------SY 104

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y  Y L +  +  E  +   + V++ LA    +    A+     +    +  +T
Sbjct: 105 MSASKFYKDYALKVKDTYFESYEDRIIAVSLFLADGCFD---FALRLALDMIKQRYQPAT 161

Query: 356 PTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G     +L SCFL  V D L  I   +     L+K  GG+  + + +R  G  I
Sbjct: 162 PTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGEEI 221

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   D++ 
Sbjct: 222 RGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADEKS 281

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD F +   Q+  +   +P  V     L   + +   ++Y+  A     
Sbjct: 282 RVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDID-FDKDYDLLASNPR- 339

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  SNLCTEI    + 
Sbjct: 340 IIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQTP 399

Query: 595 E------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CH 641
                            C LGS+N++    N+ F++      +  A+R L +V+D +  +
Sbjct: 400 SVIGNYGEGDVIGYDVSCILGSLNIVN-VINSDFEF-----IVDLAMRALTSVVDKSCIN 453

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                +K+N  +RA+GLG+M     L    IPY S EA++        ++F+++ +S+ +
Sbjct: 454 NAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSMNI 513

Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVK 754
           A+ER + +  FK S +  G +    +      R E+       +   S+  W+ LK  ++
Sbjct: 514 AKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGDIQ 573

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ ++  +A+APT +I+ I   + S+ P  + +  +   +        +L  E     
Sbjct: 574 RYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYYPMPYLSRENAI-- 631

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                           +A+ +D   LI+  S  Q+ +DQ  S  
Sbjct: 632 -----------------------------FFKSAYYMDMRKLIDLVSEAQRHVDQGISTL 662

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           LY  +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 663 LYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701


>gi|203288576|ref|YP_002223483.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
 gi|201084283|gb|ACH93871.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
          Length = 707

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/699 (24%), Positives = 307/699 (43%), Gaps = 79/699 (11%)

Query: 237 YKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
           ++ P +  H+ +   LY +++ +Y E+ +          +F                  Y
Sbjct: 59  FENPNERMHYLIDNNLYEDFYQKYSEDQILEIYKAVEGEEFKFK--------------SY 104

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y  Y L +  +  E  +   + V++ LA    +    A+     +    +  +T
Sbjct: 105 MSASKFYKDYALKVKDTYFESYEDRIIAVSLFLADGCFD---FALRLALDMIKQRYQPAT 161

Query: 356 PTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G     +L SCFL  V D L  I   +     L+K  GG+  + + +R  G  I
Sbjct: 162 PTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARGEEI 221

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   D++ 
Sbjct: 222 RGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINADEKS 281

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    IPD F +   Q+  +   +P  V     L   + +   ++Y+  A     
Sbjct: 282 RVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDID-FDKDYDLLASNPR- 339

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  SNLCTEI    + 
Sbjct: 340 IIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKMSNLCTEIFQIQTP 399

Query: 595 E------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CH 641
                            C LGS+N++    N+ F++     T+  A+R L +V+D +  +
Sbjct: 400 SVIGNYGEGDVIGYDVSCILGSLNIVN-VINSDFEF-----TVDLAMRALTSVVDKSCIN 453

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                +K+N  +RA+GLG+M     L    IPY S EA++        ++F+++ +S+ +
Sbjct: 454 NAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFMLLNFYSLKSSMNI 513

Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVK 754
           A+ER + +  FK S +  G +    +      R E+       +   S+  W+ LK  ++
Sbjct: 514 AKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIPSKSDWNNLKGDIQ 573

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ ++  +A+APT +I+ I   + S+ P  + +  +   +        +L  E     
Sbjct: 574 RYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYYPMPYLSRENAI-- 631

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                           +A+ +D   LI+  S  Q+ +DQ  S  
Sbjct: 632 -----------------------------FFKSAYYMDMRKLIDLVSEAQRHVDQGISTL 662

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           LY  +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 663 LYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701


>gi|291614699|ref|YP_003524856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
 gi|291584811|gb|ADE12469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
          Length = 981

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/676 (24%), Positives = 278/676 (41%), Gaps = 87/676 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFM 352
           + +  ++L ++Y         +  Q    RVA GLA  ET +++ +  E + L     F+
Sbjct: 44  QEISTEVLLEKYAEADE----KSVQDVRRRVARGLAQAETPEQRAKWEEAFFLAQENGFV 99

Query: 353 CSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGI-------FGALQENAMLAKYSGGLGNDW 404
            +      +G      L +CF+  V D + G        + ALQ+ A   +  GG+G D+
Sbjct: 100 PAGRINSAAGLKIQATLINCFVQPVGDAISGTNDGKPGIYDALQQAAETMRRGGGVGYDF 159

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GAH+ GTN ++ G I +++V + +   V   G R+GA    L   H D+E+F+ 
Sbjct: 160 SSIRPEGAHVKGTNSRASGPISYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEKFI- 218

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
               +  D+    + N +  + D  M+ V ++  + L    E S      G         
Sbjct: 219 ----SAKDQGDLRNFNISVGVTDALMQAVEKDEEFELVHSAEPSTAIKEAGAT------- 267

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      ++RK+ A  LW++++   ++   P + F D  N  +   +  ++ ++N 
Sbjct: 268 ----RREDGKWIYRKVRATDLWKQIIASTYDHAEPGVLFIDLMNRDNNLSYCEIIEATNP 323

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C LGSI+L     N       FDY+     +R AVR+LDNV+D+ 
Sbjct: 324 CAEQPLPP----YGCCCLGSIDLTRMVKNPFSKHAGFDYEPFKQLVRVAVRMLDNVLDVT 379

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG  G   AL ++ + Y +  A   A +    +   A  ASV
Sbjct: 380 AWPLPEQQQEAKNKRRIGLGFTGLGDALVMMGLRYDTDAARAFASDITRIMRDEAYLASV 439

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA ERG +       +                    A    SRLP DE+K +++  G+R
Sbjct: 440 DLAVERGKFPLLDADKY------------------LSAPRFASRLP-DEIKDKIRKHGIR 480

Query: 760 NSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           NS+ ++IAPT TI+       S  I+P++   Y +     D T  + + V +   R    
Sbjct: 481 NSHLLSIAPTGTISLAFADNASNGIEPAFSWFYTRKKRMMDGTTKD-YPVEDHAWRVF-- 537

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                  K   G + +       L     TA EI  +  ++  +    +ID + S  + +
Sbjct: 538 -------KQQGGDVSH-------LPPSFVTALEISAIDHMKMVAAVAPYIDTSISKTVNV 583

Query: 878 DEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS--ATSVEKSTLKGVDGKLN--------AV 926
                 +    +Y +AW  GLK     R  S   + +  +T K  D   +         V
Sbjct: 584 PADYPYEDFKDLYTEAWKAGLKGLATYRPNSVLGSVLSVTTEKKEDQPQDFVFDQDRRIV 643

Query: 927 PVTDPNSSTHSLGIPS 942
               PN +  SL  P 
Sbjct: 644 LEATPNPALASLRWPG 659


>gi|242372964|ref|ZP_04818538.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
 gi|242349290|gb|EES40891.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
          Length = 698

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/728 (24%), Positives = 302/728 (41%), Gaps = 83/728 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  LE++  + +     + ++  +      Y   F +Y EE ++       
Sbjct: 25  DLEKDQEALKVYLEEIHDKTIY-FDDEIERLHYLVDNNFYFNVFEKYTEESLR------- 76

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 77  ----EITEFAKSI----HFQFASYMSASKFYKDYALKTNDKSQFLEDYNQHVAIVALYLA 128

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
             +T   K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 129 NGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 185

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 186 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 245

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 246 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 305

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + ++  E Y            +K  A  +   +     ++G+P++ FKD  N
Sbjct: 306 QEYGVTLDDIDL--EKYYDDMVANPNIEKKKKDAREMLNTIAQTQLQSGYPYLMFKDNAN 363

Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQF 616
                 ++G +  SNLCTEI        +N    E  +     CNLGS+N++    +   
Sbjct: 364 KVHANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESG-- 421

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y 
Sbjct: 422 ---KFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYE 478

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S EA + A+     +++++I  S+E+A+ER   Y  F+ S +  G +         E + 
Sbjct: 479 SEEAKDFANIFFMMMNYYSIERSMEIAKERGERYQDFESSDYANGKYFEFYTSQEFEPQF 538

Query: 735 EL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E        ++  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 539 EKVRQLFEGLDIPTSDDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQ 598

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  ++  + +      FL  E                                   + +A
Sbjct: 599 IERRTYGNAETFYPMPFLSPE-------------------------------TMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|21228932|ref|NP_634854.1| ribonucleoside-diphosphate [Methanosarcina mazei Go1]
 gi|20907466|gb|AAM32526.1| Ribonucleoside-diphosphate [Methanosarcina mazei Go1]
          Length = 553

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/626 (24%), Positives = 265/626 (42%), Gaps = 92/626 (14%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F+ L ++ L  RY            +    RVA  +AL   E      EF +++ S  F
Sbjct: 7   EFDLLAIETLKSRYLQEGEKD----WEDVCKRVAKAIALNRGEYT----EFLDIILSKAF 58

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + S+PTL N+GT   QLS+CF+  V D +  IF +++  A++ K  GG G +++ +R  G
Sbjct: 59  IPSSPTLMNAGTPSGQLSACFVIPVEDGIEKIFDSVKTAALIQKTGGGTGFNFSKIRPDG 118

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +      G + G +  +++ N+    V   GKR+GA    L+  H D+  F+  ++  G 
Sbjct: 119 SVTVSGVGTASGPVALMRLFNEATEIVKHFGKRRGANMGILDISHNDIISFIRAKRTEGV 178

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + D FM    +                               R  + 
Sbjct: 179 ----LSNFNISVMLTDSFMSLADEG------------------------------RMDEV 204

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +   KI    ++ +++  ++  G P + F D  N  +    +G + ++N C E  L 
Sbjct: 205 WNTETGTKIG--EIFSEIVEGIWRNGEPGVLFYDHINRDNFTPALGDISATNPCGEEPLL 262

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL       + + D L   +R AVR LDN ID+N + + + +K+  
Sbjct: 263 PFES----CNLGSINLSILVEEGKVNRDSLREAVRKAVRFLDNEIDVNVYPVPEIEKATK 318

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MGF   L  L +PY S EA+ +A++ M  I+  AI  S +LA E+G +  +
Sbjct: 319 KTRKIGLGVMGFHDMLLKLGLPYDSEEALRLAEKLMGQINRAAIRESEKLAAEKGPFPEY 378

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W                                         +RN+   AIAPT T
Sbjct: 379 ENSIW--------------------------------------EFPVRNATLTAIAPTGT 400

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA--MISDLKYHDG 829
           I+ + G S  I+P +  +Y ++ ++G   ++   L     ++ L       + +  Y  G
Sbjct: 401 ISILAGCSAGIEPVFSWVYRRARIAGKEFMLVHPLFETHFKQKLSKPDYNRLLEHVYAHG 460

Query: 830 SIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KL 885
           ++ +I     + ++ K +  +A +I+    I+  +  Q+      S  + +   +GK  +
Sbjct: 461 TLQDITDSKIVSEEEKGLFRSALDINWKTHIDIQAAFQRHCHAGISKTINMPVDAGKEDI 520

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSV 911
                 AW  GLK     R+ S   V
Sbjct: 521 GKALIYAWKQGLKGLTIYRTGSRQHV 546


>gi|222150733|ref|YP_002559886.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119855|dbj|BAH17190.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 701

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/674 (24%), Positives = 281/674 (41%), Gaps = 59/674 (8%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS--RIEMPQ 318
           V+    ++   +++   L + +KY +D  F    Y+     +  Y L  N     +E  +
Sbjct: 61  VEQDFYYDLFNEYNETDLNDIIKYAQDIEFNFASYMSASKFFKDYALKTNDKQQYLEDYK 120

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP 377
              + V++ LA  +  K K+ +   + +    +  +TPT  N+G  R  +L SCFL  V 
Sbjct: 121 EHVIIVSLYLAKGDVNKAKQLI---SAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVD 177

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I         L+K  GG+  + + +R  G  I G  G ++GV+P  K        
Sbjct: 178 DSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSY 237

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +Q G+R GA   YL  +H DV EFLD +K   D+  R   ++T   +P  F     +  
Sbjct: 238 ADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGK 297

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            + +F+P  V   + L   +  I  E Y+       I    K  A  +   +     ++G
Sbjct: 298 DFFMFAPHTVEREYGLTLDDLNID-EMYDELVANPNIMKKSK-DAREMLNLIAQTQLQSG 355

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAH 610
           +P++ FKD  N      ++G +  SNLCTEI         N    E  +    S NL + 
Sbjct: 356 YPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSL 415

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  +  K   ++ T +  L  V D           K+N    ++GLG+M     L  
Sbjct: 416 NIVNVMESKKFKDSVHTGMDALTTVSDEADIKNAPGVAKANRELHSVGLGVMNLHGYLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728
             I Y S EA E A      ++F+++  S+E+A ER   ++ F+ S +  G +    +  
Sbjct: 476 NQIGYESEEAKEFAATFFMMLNFYSLQRSMEIAMERNETFADFEKSDYASGKYFDKYVAT 535

Query: 729 LAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + +        ++  S   W +LK +V   G+ ++  +AIAPT +I+ +   + S+
Sbjct: 536 DFRPKSDKVTALFEGIDMPSPEDWADLKDKVMKNGLFHAYRLAIAPTQSISYVQNATSSV 595

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  + +      FL  E                                 
Sbjct: 596 MPIVDQIERRTYGNAETFYPMPFLSPE-------------------------------TM 624

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTY 901
             + +AF  D M LI+  +  Q+ IDQ  S  L+++   S ++L  +Y  A   GLK+ Y
Sbjct: 625 WFYKSAFNTDQMKLIDLIATIQEHIDQGISTILFVNSDISTRELARLYVYAHHKGLKSLY 684

Query: 902 YLRSRSATSVEKST 915
           Y R++   SVE+ T
Sbjct: 685 YTRNK-LLSVEECT 697


>gi|144899535|emb|CAM76399.1| Ribonucleoside-diphosphate reductase alpha subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 772

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/653 (24%), Positives = 277/653 (42%), Gaps = 89/653 (13%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ ++   +  + R+A  LA  E +       F + L+ F F+ +  
Sbjct: 10  QIWDMKYRLKDADGTPVDKTIEETWGRIAKALAQAEKDPALWEARFADALADFKFLPAGR 69

Query: 357 TLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  +GT       +   +  +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 70  IISGAGTDRRVTMFNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPV 129

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A +   H D+E F+D +   G    
Sbjct: 130 KGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKHEAG---- 185

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  I D FM+ V  +  W L           ++G                   
Sbjct: 186 RLRMFNLSVLITDPFMEAVKHDQAWEL-----------VFGG------------------ 216

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V++ + A ALW K++   +    P + F D  N  +   +   +H++N C E  L    
Sbjct: 217 VVYKSLPARALWDKIMHATYAYAEPGVIFIDRINRLNNLHYCETIHATNPCGEQPLPP-- 274

Query: 595 EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               VC LGS+NL    ++      + D DKL   +R AVR++DNVID++   +++ +  
Sbjct: 275 --YGVCLLGSVNLAKLVSDPFEAKARLDMDKLRDLVRVAVRMMDNVIDVSRFPLDRHENE 332

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
             + R IGLG+ G   AL L +  Y   +A+ + +E M+ +   A  ASVELAQE+GA+ 
Sbjct: 333 AKSKRRIGLGVTGLADALILCNARYGGKDALRLTEEWMDALRREAYLASVELAQEKGAFP 392

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            ++   +  G                     T +    +++  +   G+RN+   +IAPT
Sbjct: 393 LYEKEPYLAG--------------------ETIQALDADVQAAIAEHGIRNALLTSIAPT 432

Query: 770 ATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+      S  ++P +   Y ++                L++     E  +SD  Y  
Sbjct: 433 GTISLFADNVSSGLEPVFSFTYTRAV---------------LQKDGTRREEEVSDYAYRL 477

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
             +   E  P  L      A  ++P   +   +  QK+ID + S  + + E  S +    
Sbjct: 478 FRLLKGENAP--LPPAFVDAQRLNPTEHVVMQAAVQKYIDSSISKTINVPESISFEDFRH 535

Query: 888 IYRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           +Y QA+  G K     R    + S  +V+K   K  D     +P+  P +   
Sbjct: 536 VYEQAYASGCKGCTTYRPNDITGSVLTVKKEEPKAEDQDQPQLPLGKPAARPE 588


>gi|119897702|ref|YP_932915.1| putative ribonucleoside reductase [Azoarcus sp. BH72]
 gi|119670115|emb|CAL94028.1| conserved hypothetical ribonucleoside reductase [Azoarcus sp. BH72]
          Length = 958

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/628 (26%), Positives = 264/628 (42%), Gaps = 75/628 (11%)

Query: 334 EKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL-------YGI 383
            +EKRA      L +    F+ +      +GT     L +CF+  V D +        GI
Sbjct: 54  PEEKRAHWEAKFLEAQEKGFVPAGRINSAAGTSLAATLINCFVQPVGDSVTEAVDGRPGI 113

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL + A   +  GG+G D++ +R  GA + GT   + G + +++V + +   V   G 
Sbjct: 114 YTALAQAAETMRRGGGVGYDFSSIRPKGAMVRGTASNASGPVSYMRVFDRSCETVESAGA 173

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    L   H D+EEF+  +     D     + N +  + D FM+ V  +    L  
Sbjct: 174 RRGAQMGVLRCDHPDIEEFIHAK-----DHGDLTNFNISVGVTDDFMRAVESDGDIELTH 228

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             E SD     G         Y+R   R    V+RK+ A ALW +++   ++   P I F
Sbjct: 229 KSEPSDELKAAG--------AYQRDDGR---WVYRKVPARALWDQVMRSTYDHAEPGILF 277

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDY 618
            D  N  +   +   + ++N C E  L         C LGS+NL     N      +FDY
Sbjct: 278 LDRMNQDNNLYYCETIEATNPCAEQPLPP----YGCCCLGSVNLTPFVKNPFTDKAEFDY 333

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
                 +  ++R+LDNV+D     +E+ ++   + R +GLG  G   AL +L   Y S E
Sbjct: 334 AAFGKVVDVSIRMLDNVLDATHWPLEQQQREADSKRRVGLGFTGLGDALIMLGKRYDSDE 393

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E A +  E++   A  AS ELA+ERGA+  F   ++  G                   
Sbjct: 394 AREEARKISEYMRNRAYLASTELAKERGAFPLFNADMYLSGG------------------ 435

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMS 796
           N  SRLP  E+K +++  G+RNS+ ++IAPT TI+       S  I+P +   Y +    
Sbjct: 436 NFASRLP-AEVKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKRM 494

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            D T    + V +   R          L  H G  GN+E++P        TA EI     
Sbjct: 495 ADGTFKE-YAVEDYAWR----------LYKHLG--GNVEQLP----SYFVTALEISAQAH 537

Query: 857 IESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +  +    +ID + S  + + E       + +Y  AW  GLK     R  S      S 
Sbjct: 538 KDMVAAVAPYIDTSISKTVNVPEDYPYADFEDLYLTAWKAGLKGLATYRPNSVLGSVLSV 597

Query: 916 LKGVDGK-LNAVPVTDPNSSTHSLGIPS 942
               + K  + V + D N       +P+
Sbjct: 598 APTSEQKQPHDVEIPDANKRLSIKSLPA 625


>gi|71906603|ref|YP_284190.1| ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
 gi|71846224|gb|AAZ45720.1| Ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
          Length = 964

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/629 (27%), Positives = 268/629 (42%), Gaps = 81/629 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTP 356
           ++L ++Y      +          RVA  LA  E E ++   E    L +    F+ +  
Sbjct: 30  EVLIEKYAKGKETNV----HDVRRRVAYALAQVEQEADRAHWEN-KFLWAQENGFIPAGR 84

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVR 408
               +GT     L +CF+  V D +        GI+ AL + A   +  GG+G D++ +R
Sbjct: 85  INSAAGTDLQATLINCFVQPVGDSIVENTEGKPGIYTALAQAAETMRRGGGVGYDFSSIR 144

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT  ++ G + +++V + +   V   G R+GA    L   H D+EEF+  +  
Sbjct: 145 PQGARVKGTQSRASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHAK-- 202

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+    + N +  + D FM+ V  +    L        LH         A   Y+R+
Sbjct: 203 ---DKGDLTNFNISIGVTDPFMEAVDADGDVEL--------LHRAEPNADMRAAGAYQRE 251

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V+RK+ A  LW +++   ++   P I F D  N  +   +  V+ ++N C E 
Sbjct: 252 DGI---WVYRKVRARDLWDQVMKSTYDHAEPGILFLDRMNKDNNLNYCEVIEATNPCAEQ 308

Query: 589 TLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C LGSINL  +  +      +FD+D  A  IR + R+LDNV+D     +
Sbjct: 309 PLPP----YGCCCLGSINLTLYVKDAFSEQAEFDFDAFAEVIRISTRMLDNVLDATHWPL 364

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+ ++     R +GLG  G   AL +L + Y  PEA  +A    EF+   A   SVE+A+
Sbjct: 365 ERQQQEAANKRRVGLGYTGLGDALAMLRLRYDKPEARAMAARISEFMRDTAYMYSVEMAK 424

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+  F   L+  G                   N  SRLP D +K  ++  G+RNS+ 
Sbjct: 425 ERGAFPLFNAELYLSGG------------------NFASRLPTD-VKAEIRKHGLRNSHL 465

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT TI+       S  I+P +   Y +     D T +  + V +   R        
Sbjct: 466 LSIAPTGTISLAFADNASNGIEPPFSWTYNRKKRMQDGT-IKEYSVEDYAWR-------- 516

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDE 879
             L  H G  G++ ++PD       TA EI      +  +    +ID + S   N+  D 
Sbjct: 517 --LYKHRG--GDVSKLPD----FFVTALEISAQAHSDMVAAVAPFIDTSISKTVNVPADY 568

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           P       +Y  AW  GLK     R  S 
Sbjct: 569 PYT-DFQDLYMSAWKSGLKGLATYRPNSV 596


>gi|153004250|ref|YP_001378575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027823|gb|ABS25591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 593

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/657 (26%), Positives = 273/657 (41%), Gaps = 79/657 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNL-LSS 348
                 L +L  RY L    G+ +E P A F RVA  +A  E   E+ RA E +   +S+
Sbjct: 3   RLTDNALHVLERRYLLRDERGAVVETPGALFRRVARAVAAAEPPAERDRAAERFEARMSA 62

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R
Sbjct: 63  LEFLPNSPTLMNAGRAHGQLAACFVLPVEDDLAAIFDALKWAALIHQSGGGTGFAFSRLR 122

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +  T+G + G + F++V +     + QGG R+GA  A L   H D+ EF+D +++
Sbjct: 123 PRGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLSAEHPDILEFVDAKRS 182

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G       + N +   PD   +  ++   W L  P                        
Sbjct: 183 HG-----LENFNLSVAAPDALFRAASRGDPWPLRHP------------------------ 213

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  + R I   AL  ++    + +G P + F D     +P   +G   + N C E 
Sbjct: 214 ----RGGIVRNIDPRALLARIADSAWASGEPGLVFLDRVEAANPTPDLGHFEAVNPCGEQ 269

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         C LGS+NL     + + D+D L + +R  VR LD+V+D+N   + +  +
Sbjct: 270 PLLPFE----ACTLGSVNLACFERSGRVDWDGLGACVRDGVRFLDDVLDVNVWPLPQIAE 325

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +H +R +GLG+MG+   L  L IPY SP+A+  ADE M F++  A +AS  LA+ERGA+
Sbjct: 326 ISHRNRKVGLGVMGWADLLVRLGIPYDSPDALAKADEVMGFVTREAHAASEALARERGAF 385

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  S       P                                    RN+    IAP
Sbjct: 386 PGFPTSALAHAGRP-----------------------------------RRNATVTTIAP 410

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T T+A I G S  I+P +   YV+  +          LV E  +                
Sbjct: 411 TGTLALIAGCSSGIEPLFALAYVRRALDDSELREEHPLVAEALRAA--GADAALAAVRAA 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           G    +  +P  + ++ ATA ++ P   +   +  Q+  D   S  + L    +   +  
Sbjct: 469 GRARGVPGVPPAVARLFATAHDVAPEAHVRMQAAFQRHTDNGVSKTINLPRSAAVDDVAR 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            Y  A+ +G K     R  S      ++    +G+        P S T      + C
Sbjct: 529 AYALAYELGCKGITVYRDGSRERQVLTSGATRNGE-ECPQCASPLSRTGGCMTCARC 584


>gi|73671045|ref|YP_307060.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
 gi|72398207|gb|AAZ72480.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
          Length = 561

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/625 (24%), Positives = 276/625 (44%), Gaps = 92/625 (14%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L  RY      +     +    RVA  +AL + E     ++F +L+    F+ S+PTL
Sbjct: 22  ETLKARYLHEGENN----WEDICERVAEAVALTDEEY----LDFKDLMLRKVFLPSSPTL 73

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N+GT   QL++CF+  V D +  IF +++  A++ K  GG G D++ +R  G+     +
Sbjct: 74  MNAGTEFGQLAACFVIPVEDKVEEIFDSIKAAALIQKTGGGTGFDFSKIRPEGSSNSCGD 133

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G +  +K+ N+    V Q G+R+GA    L+  H D+  F+  +   G+      +
Sbjct: 134 DATSGPVAVMKLFNEATEIVKQFGRRRGANMGILDISHNDILSFIRSKHVEGE----LSN 189

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  +PD FM+ V            E     +++ ++ ++                  
Sbjct: 190 FNISVMVPDAFMELV------------EADKADEVWNRQTDVTVGR-------------- 223

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
                 ++ +++  ++  G P I F D  N  +    +G + ++N C E  L        
Sbjct: 224 ------IFSEIVEGIWRNGEPGILFYDRINRDNFTPALGDISATNPCGEEPLLPFE---- 273

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNLGSINL     + + ++D L      A+R LDN ID N + + + + +    R +GL
Sbjct: 274 ACNLGSINLSLCVIDGKVNWDFLREVAGKAIRFLDNEIDKNAYPVPEIETATKRTRKVGL 333

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG    L  + +PY S EA+E+A++ ME I++ +I  S +LA E+G++  ++ S W  
Sbjct: 334 GVMGLHDMLLKIGLPYDSQEALELAEKLMEQITWASIRESRKLAVEKGSFPGYEDSTW-- 391

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                                                + MRN+   A+APT TI+ + G 
Sbjct: 392 ------------------------------------ELPMRNAALTAVAPTGTISILAGC 415

Query: 779 SQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDL-WDEAMISDLKYHDGSIG---N 833
           S  I+P +  +Y ++   G +F +V+ F     K +    D + + +  Y  G++    N
Sbjct: 416 SAGIEPVFSWVYRRTQTVGREFMLVHPFFKAHFKSKLSEADYSWLLEHVYKYGTLQDVEN 475

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQA 892
            E + ++ K++  +A +ID    I+  +  Q+      S  + +   +GK  +D     A
Sbjct: 476 PELVSEEEKQLFRSALDIDWKAHIDMQAAFQRHCHAGISKTINMPASAGKEDIDKALVYA 535

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK 917
           W  GLK     R+ S   V  S  K
Sbjct: 536 WKQGLKGLTIYRTGSRQYVVLSLQK 560


>gi|85860286|ref|YP_462488.1| ribonucleoside-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
 gi|85723377|gb|ABC78320.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 551

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 161/624 (25%), Positives = 262/624 (41%), Gaps = 98/624 (15%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-----EKRAVEFYNL 345
             +   L +L +RY +    G+ +E P+  F RVA  ++  E         +    FY +
Sbjct: 6   QLDDNALLVLRERYLIRDEAGTLLETPEELFRRVACSVSQGENNDPEGRSAEMEEAFYEM 65

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S  F+ ++PTL N+G    QL++CF+  V D L  IF +++  A + +  GG G  ++
Sbjct: 66  MTSLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSLDSIFDSVKLTAKIHQTGGGTGFSFS 125

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F++V N    A+ QGG R+GA    L   H D+ EF+ +
Sbjct: 126 RLRPKNDVVKSTMGVASGPVSFIRVFNCATEAIKQGGTRRGANMGILRIDHPDIMEFVAI 185

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +++  +      + N +  I D FM+   +N    L +P                     
Sbjct: 186 KRDPAE----LTNFNLSVAITDEFMRSYEENRDVALINPRTKK----------------- 224

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                        K++A  L R +    + +G P + F D  N  +P  HVG + ++N C
Sbjct: 225 ----------AAGKVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPC 274

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGSINL     N   D+ +L       VR LD+V++++ +  E+
Sbjct: 275 GEQPLLPYES----CCLGSINLSRIVRNGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEE 330

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +     +R IGLG+MGF   L  L IPY SP+A     E +  I   +  AS  LA++R
Sbjct: 331 IRAMTSGNRKIGLGVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEKR 390

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +FKGS+WD+                                   K +  RN+    
Sbjct: 391 GPFPNFKGSVWDR-----------------------------------KNLLQRNATTTT 415

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT T++ + G S  ++P Y   Y +    G    V   L  + K R            
Sbjct: 416 IAPTGTLSILAGTSSGVEPIYDIRYKRILPGGIEVEVEDPLWRKAKDR------------ 463

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                        +  +++   A+E+ P   +      Q  +D A S  + L E  +   
Sbjct: 464 ---------PDADELRRRLFRKAYEVSPFAHLNIQRTFQSSVDNAVSKTVNLPETATADD 514

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908
           +  IY  A+ MGLK T   R++S 
Sbjct: 515 ILDIYVAAYRMGLKGTTVFRNKSR 538


>gi|330823092|ref|YP_004386395.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
 gi|329308464|gb|AEB82879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
          Length = 811

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/663 (23%), Positives = 263/663 (39%), Gaps = 81/663 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMC 353
           + + +L ++YF           +  F RVA  LA  E E  + A+   F + L +     
Sbjct: 17  ISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G        I+ AL+E A   +  GG+G D++
Sbjct: 73  GRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 133 RIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFITA 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD FM+ V Q+  W L                 E+  E  
Sbjct: 193 KRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVHSAAPG---------AELLKEGA 239

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            ++AD     ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 240 RQRADG--QWIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNPC 297

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDI 638
            E  L         C+LG I L     N         FD+D     + T VR LDNV+D+
Sbjct: 298 GEQPLPP----YGCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLDV 353

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  AS
Sbjct: 354 TFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRAS 413

Query: 699 VELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           VELA+E+GA+  F+   +  +G F                    SRLP ++++K+++  G
Sbjct: 414 VELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +   R  
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSK-SEYVVEDYAWRLY 512

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G +       + L     +A ++     +      Q ++D A S  +
Sbjct: 513 ---------KTLGGDV-------NQLPAYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E         +Y QAW  GLK     R  S                 + P  +P   
Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616

Query: 935 THS 937
              
Sbjct: 617 FDP 619


>gi|23015529|ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 775

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/643 (24%), Positives = 262/643 (40%), Gaps = 85/643 (13%)

Query: 296 LGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +  QI   +Y L    G+ ++   +  + RVA  LA  E E       F+  +  F  + 
Sbjct: 7   ISQQIWDMKYRLKSAEGTALDGTIEDTWRRVARSLAATEAEPAVWEQRFFESMEDFKVLP 66

Query: 354 STPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +   +  +GT     L +CF +  +PDD+ GIF  L+E A+  +  GG+G D++ +R  G
Sbjct: 67  AGRIISGAGTDRKVTLFNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKG 126

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A + G    + G + F+ V +     +   G R+GA+ A +   H D+E F+D ++  G 
Sbjct: 127 APVKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKREAG- 185

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              R    N +  + D FM+ V ++  W L                              
Sbjct: 186 ---RLRMFNLSVLVTDPFMQAVKEDGPWELTF---------------------------- 214

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            +   ++ + A  LW K++   +    P + F D  N  +   +   +H++N C E  L 
Sbjct: 215 -KGVTYKSLPARELWNKIMRATYSYAEPGVIFIDRINRLNNLSYCEDIHATNPCGEQPLP 273

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           +      VC LGS+NL            + D DKL   +R AVR++DNVID++ + +++ 
Sbjct: 274 A----YGVCLLGSLNLARLVDRPFEDGARLDLDKLDRLVRVAVRMMDNVIDVSNYPLDRH 329

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +    + R IGLG+ G   AL L    Y   EA+ + +  M  I   A  AS ELA+E+G
Sbjct: 330 RHEALSKRRIGLGITGLADALILCGARYGGREAIRLTETWMAAIRRSAYLASAELAREKG 389

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  +    +  G                        L  D + + ++T G+RN+   +I
Sbjct: 390 AFPLYDAEKYLAGE-------------------TIQGLDSD-VIEAIRTHGIRNALLTSI 429

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+      S  ++P +   Y +                 L++     E  +SD  
Sbjct: 430 APTGTISLFADNVSSGLEPVFAFTYTRGV---------------LQRDGTRREEEVSDYA 474

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKK 884
           Y        E  P  L      A  + P   +   +  QK++D + S  + + E  S   
Sbjct: 475 YRLFRRLRGENAP--LPTYFVDALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFDA 532

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
              +Y QA+ +G K     R    T       K    + +A P
Sbjct: 533 FKDVYTQAYELGCKGCTTYRPNDITGSVLEVKKEARPEDDAEP 575


>gi|289551412|ref|YP_003472316.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658920|ref|ZP_07911787.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
 gi|289180943|gb|ADC88188.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496044|gb|EFU84372.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
          Length = 701

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/720 (23%), Positives = 293/720 (40%), Gaps = 81/720 (11%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             +  LE++  + +     + ++  +      Y   F +Y E  ++        ++F+  
Sbjct: 35  ALKVYLEEIHDKTIY-FDDEIERLHYLVDHDFYFNVFDKYSEIDLREITDFAKSIEFNFA 93

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEK 337
                          Y+     Y  Y L  N     +E        VA+ LA      + 
Sbjct: 94  --------------SYMSASKFYKDYALKTNDKSQYLEDYNQHVTIVALYLA---NGNKA 136

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K 
Sbjct: 137 QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           + ++  E Y          + +K  A  +   +     ++G+P++ FKD  N      ++
Sbjct: 317 DIDL--EQYYDDMVANPNIIKKKKDAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNI 374

Query: 577 GVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLCTEI     +                 CNLGS+N++           K   +
Sbjct: 375 GQIKMSNLCTEIFQLQETSIINDYGIDDEIKRDISCNLGSLNIVNVMETG-----KFRDS 429

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + T +  L  V D  N       +K+N    ++GLG+M          I Y S EA + A
Sbjct: 430 VFTGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYFAKNKIGYESEEAKDFA 489

Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL- 736
           +     ++++++  S+++A+ER   Y  F+ S +  G +       D     A+V+    
Sbjct: 490 NVFFMMMNYYSLERSMQIAKERGQVYQDFEQSDYANGKYFSFYTAQDITPRFAKVQQLFE 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  +
Sbjct: 550 GIEIPTAEDWKALQQQVEAHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGN 609

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            +      FL  E                                   + +AF  D M L
Sbjct: 610 AETFYPMPFLSPE-------------------------------TMWYYKSAFNTDQMKL 638

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 639 IDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK-LLSVEECT 697


>gi|57014144|gb|AAT68709.2| ribonucleoside reductase alpha subunit [Borrelia hermsii]
          Length = 690

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/706 (23%), Positives = 302/706 (42%), Gaps = 80/706 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQC-LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  +  +  P +  H+ +   LY +++  Y E  +        + +F             
Sbjct: 35  KAKSLRFSNPNERMHYLIDNNLYEDFYKNYSEAQILEIYKLVELENFKFK---------- 84

Query: 290 DFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
                Y+     Y  Y L +NG + +E  +   + V++ LA    E    A++  + +  
Sbjct: 85  ----SYMSASKFYKDYALKLNGDTYLESYEDRIIAVSLFLADGCFE---FALKLASEMIK 137

Query: 349 FHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G R   +L SCFL  V D L  I   +     L+K  GG+  + + +
Sbjct: 138 QRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNI 197

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K
Sbjct: 198 RARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKK 257

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   Q   +  F+P  +      +  E +   E Y+ 
Sbjct: 258 INADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAPYSLYKATGRFMNEIDFDLE-YDL 316

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A      + ++I A  +  ++  + FE+G+P+I ++  CN+ +P + +G +  SNLCTE
Sbjct: 317 LASNP-NILKKEIKARDMLVRIARLQFESGYPYIMYQTACNLNNPLKGIGKIKMSNLCTE 375

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  C LGS+N++    +N         T+  A++ L +V
Sbjct: 376 IFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIVNVVNSN------FEYTVDIAMQALTSV 429

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D           K+N+ + A+GLG+M     L    IPY S EA++        ++F++
Sbjct: 430 CDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIKNKIPYESAEAIDFVRTFFMLLNFYS 489

Query: 695 ISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           I +S+ +A+     +  FK S +  G +    +      + E+       +    +  W+
Sbjct: 490 IKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTEDFSPKTEVVKGIFSGIKIPLKSDWE 549

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V+  G+ ++  +A+APT +I+ I   + S+ P  + +  +   +        +L 
Sbjct: 550 NLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYYPMPYLS 609

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E                                     +A+ +D   LI+  S  Q+ +
Sbjct: 610 KENAL-------------------------------FFKSAYYMDMRKLIDLISEAQRHV 638

Query: 868 DQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQ  S  LY  +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 639 DQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 684


>gi|56807675|ref|ZP_00365559.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 587

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/626 (26%), Positives = 277/626 (44%), Gaps = 64/626 (10%)

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG  R  +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 3   DAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 62

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  F
Sbjct: 63  CLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTF 122

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   +     IPD+  +   +N    LFSP ++   +     +  I  
Sbjct: 123 LDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKRAYGKDMSDISITE 182

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E  +  A+    K +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  S
Sbjct: 183 EYDKLLANPAIKKTY--ISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMS 240

Query: 583 NLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   S+              E   CNLGSIN+    A    D       I T++R
Sbjct: 241 NLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQAMA----DAPHFEQLITTSIR 296

Query: 631 VLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD V  ++  +     +  N  + A+GLG M     L   HI Y + EAV+  D     
Sbjct: 297 ALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHA 356

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRT 741
           ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      
Sbjct: 357 MAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLP 416

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     
Sbjct: 417 TVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIY 476

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V ++ +N+                                      A+E+ P  +I+  +
Sbjct: 477 VPAYQINQANYT-----------------------------YYERGAYEVGPKAIIDVVA 507

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             QK +DQA SL L++ D+ + + L+  Y QA+     + YY+R R      +  L G +
Sbjct: 508 AAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR------QDVLAGSE 561

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTS 946
                  VT P +S  +     SC  
Sbjct: 562 QYDEDSLVTAPGASDETTTECQSCMI 587


>gi|319401191|gb|EFV89406.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/716 (24%), Positives = 295/716 (41%), Gaps = 73/716 (10%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             +  LE++  ++++    + ++  +      Y   F +Y E  +            ++ 
Sbjct: 35  ALKVYLEEIHDKMIS-FDDEIERLHYLVDNNFYFNVFEKYSEAELS-----------EIT 82

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE 336
             A  +     F F  Y+     Y  Y L  N     +E        VA+ LA       
Sbjct: 83  EYAKSI----HFQFASYMSASKFYKDYALKTNDKTKFLEDYNQHVAIVALYLA---NGNV 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + ++  E Y            +K  A  +   +     ++G+P++ FKD  N      +
Sbjct: 316 DDIDL--EKYYDDMVANPNIEKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSN 373

Query: 576 VGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI        +N    E  +    S NL +    N  +  K   ++ T 
Sbjct: 374 IGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVFTG 433

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 434 MDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFF 493

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNR 740
             +++++I  S+E+A+ER   Y  F+ S +  G +         E + E        ++ 
Sbjct: 494 MIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGIDI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 554 PTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL  E                                   + +AF  D M LI+  
Sbjct: 614 YPMPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLV 642

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 ATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|242242100|ref|ZP_04796545.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
 gi|242234413|gb|EES36725.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
          Length = 698

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 172/716 (24%), Positives = 295/716 (41%), Gaps = 73/716 (10%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             +  LE++  ++++    + ++  +      Y   F +Y E  +            ++ 
Sbjct: 32  ALKVYLEEIHDKMIS-FDDEIERLHYLVDNNFYFNVFEKYSEAELS-----------EIT 79

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKE 336
             A  +     F F  Y+     Y  Y L  N     +E        VA+ LA       
Sbjct: 80  EYAKSI----HFQFASYMSASKFYKDYALKTNDKTKFLEDYNQHVAIVALYLA---NGNV 132

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G  R  +L SCFL  + D L  I         L+K
Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + ++  E Y            +K  A  +   +     ++G+P++ FKD  N      +
Sbjct: 313 DDIDL--EKYYDDMVANPNIEKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSN 370

Query: 576 VGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI        +N    E  +    S NL +    N  +  K   ++ T 
Sbjct: 371 IGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVFTG 430

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 431 MDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFF 490

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNR 740
             +++++I  S+E+A+ER   Y  F+ S +  G +         E + E        ++ 
Sbjct: 491 MIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGIDI 550

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 551 PTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 610

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL  E                                   + +AF  D M LI+  
Sbjct: 611 YPMPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLV 639

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 640 ATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 694


>gi|307352276|ref|YP_003893327.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307155509|gb|ADN34889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 566

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/640 (25%), Positives = 277/640 (43%), Gaps = 94/640 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
              +IL  RY+   +            RVA  +A    +  +   E+++++++  F+ ++
Sbjct: 5   AAERILMLRYY-RDDEK---SFDELCRRVAGAIA----DSPEEEAEYFDMMNTLRFLPNS 56

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+GT   QL++CF   V D +  IF A++  AM+ K  GG G +++ +R  GA + 
Sbjct: 57  PTLMNAGTDMNQLAACFTLYVGDSITEIFDAMKWGAMIHKSGGGTGYNFSNIRPEGAFVE 116

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            + G + G + F+K  +     + QGG+R+GA    L   H D+ +F++ +   GD    
Sbjct: 117 SSEGVASGPVSFMKAFDAVTGVIRQGGRRRGANMGILNVDHPDILKFINSKTREGD---- 172

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +  + D FM  V                        F+  +   E  A      
Sbjct: 173 IANFNISVMVTDRFMGLVEAG--------------------RFDRVWITREETA------ 206

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
              +I+   +W  +   ++  G P + F D  N ++    +G ++++N C E  L     
Sbjct: 207 --EEITVGDIWNGITEGIWRNGEPGLLFYDEINRKNMTPALGNINATNPCGEQPLLPFES 264

Query: 596 ETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               C LGSINL        + D   L  TIRTAV+ LD +ID N + I + +++    R
Sbjct: 265 ----CVLGSINLSKFIDEKGETDLASLEKTIRTAVKFLDRIIDKNRYPIPEIEEATKRTR 320

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLGLMG   AL +  IPY SPE  +     M+F++  A+S S  LA+E+G + ++KGS
Sbjct: 321 KVGLGLMGVHDALIMRRIPYDSPEGRKYCGSIMQFVAETAVSESGRLAEEKGPFPAWKGS 380

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W++                                       +RN+    IAPT +I+ 
Sbjct: 381 VWEKN-----------------------------------GKMVRNAALTTIAPTGSISI 405

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK-----------QRDLWDEAMIS 822
           I   S  I+P +   Y + N +G+ F +V+     EL+           +R+     ++S
Sbjct: 406 IAECSSGIEPVFSYSYTRMNTAGESFRMVHPLFKKELETVAGKLFPNPEERERRVGEVLS 465

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            + +  G++ +I  +PD   KI  TA +I     I   +  Q+ +  + S  + +   S 
Sbjct: 466 HV-HETGTVQDIGWLPDSFTKIFTTALDIRWRDHILMQAAFQEHVHASISKTINMPGTST 524

Query: 883 K-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           K ++      AW   LK     R+ S         K  DG
Sbjct: 525 KNEISEALLFAWRCRLKGITIYRTSSRKDAVLCLGKFGDG 564


>gi|258423380|ref|ZP_05686271.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
 gi|257846441|gb|EEV70464.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
          Length = 718

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 174/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    N      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMENG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 476 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 535

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 536 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 595

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 596 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 637 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 684

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 685 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 714


>gi|319942969|ref|ZP_08017252.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319743511|gb|EFV95915.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 829

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/659 (23%), Positives = 258/659 (39%), Gaps = 76/659 (11%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL--LSSFHFMCSTP 356
            +L ++Y    +G + E     F RVA  LA  E  + +   E   L  L +        
Sbjct: 23  DVLAEKYLK--DGEKTEA--ELFARVARALASVEKPEIRDEWEAKFLGNLHAGAIGAGRI 78

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D + G        I+ AL+E A   +  GG+G D++ +R
Sbjct: 79  MSAAGTDIQATLINCFVQPVGDCIQGYDDQGYPGIYEALREAAETMRRGGGVGYDFSRIR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT+  + G   ++ V + +   V   G R+GA    L   H DV +F+  ++ 
Sbjct: 139 PNGAEVKGTHSIASGPCSYINVFDQSCATVESAGSRRGAQMGVLRIDHPDVLDFITAKRT 198

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FMK +  NA W L        +H        +A   Y+R 
Sbjct: 199 PG----RWNNFNVSVGVTDAFMKALQDNADWEL--------VHRARPGRKVMAAGAYQRD 246

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             +    V+R++ A  LW  ++   ++   P I F D     +   +   + ++N C E 
Sbjct: 247 DGK---WVYRRVPARQLWDTIMKSTYDFAEPGILFLDAIGRDNNLNYCETIEATNPCGEQ 303

Query: 589 TLNSSSEETAVCNLGSINLLAHFANN-------QFDYDKLASTIRTAVRVLDNVIDINCH 641
            L         C+LG I L     N         FD+      +   VR LDNV+D+   
Sbjct: 304 PLPP----YGCCDLGPIILTRFVRNAFGHGGEPTFDFAAFEDVVAIQVRALDNVLDVTFW 359

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            ++K +      R IG+G  G  + L +L + Y   E   +A    E +   A  ASVEL
Sbjct: 360 PLDKQRAEAAAKRRIGVGFTGLGNTLAMLKLRYDRAEGRAMAARIAETMRNAAYRASVEL 419

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+GA+  F    +            L +   +   +  SRLP D++K  ++  G+RNS
Sbjct: 420 AKEKGAFPQFDADRY------------LGKGSKKGEGSFASRLP-DDIKADIRKYGIRNS 466

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + ++IAPT T++       S  I+P +   Y +     D +  + ++V +   R      
Sbjct: 467 HLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSR-SEYVVEDHAWRLF---- 521

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                K   G +       D+L      A  +     +      Q ++D + S  + +  
Sbjct: 522 -----KSQGGDV-------DNLPDYFVNALAMTAQEHVAMMEAVQPYVDTSISKTVNVPA 569

Query: 880 PS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               +    +Y+QAW   LK     R           L+    K    P     ++   
Sbjct: 570 DYPYEDFKDLYQQAWKARLKGLATYRPNPILGA---VLEAEPAKKEEKPADKAEAAAQQ 625


>gi|223042914|ref|ZP_03612962.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
 gi|222443768|gb|EEE49865.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
          Length = 701

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 176/728 (24%), Positives = 299/728 (41%), Gaps = 83/728 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  LE++  + +     + ++  +      Y   F +Y EE ++       
Sbjct: 28  DLEKDQEALKVYLEEIHDKTIY-FDDEIERLHYLVDNDFYFNVFEKYSEEELR------- 79

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 80  ----EITEYAKSI----HFQFASYMSASKFYKDYALKTNDKSQFLEDYNQHVAIVALYLA 131

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
             +T   K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 132 NGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 248

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 308

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + +   + Y+       I   +K  A  +   +     ++G+P++ FKD  N
Sbjct: 309 QEYGVTLDDID-LEKYYDDMVANPNIDKKKK-DAREMLNTIAQTQLQSGYPYLMFKDNAN 366

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQF 616
                  +G +  SNLCTEI     +                 CNLGS+N++    +   
Sbjct: 367 KVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESG-- 424

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y 
Sbjct: 425 ---KFRDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYE 481

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S EA + A+     +++++I  S+E+A+ER  +Y  F  S +  G +         E + 
Sbjct: 482 SEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSKEFEPQF 541

Query: 735 EL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E        ++  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 542 EKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQ 601

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  ++  + +      FL  E                                   + +A
Sbjct: 602 IERRTYGNAETFYPMPFLSPE-------------------------------TMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|329736710|gb|EGG72975.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU028]
          Length = 701

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/728 (24%), Positives = 305/728 (41%), Gaps = 83/728 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  LE++  ++++    + ++  +      Y   F +Y E    A L+   
Sbjct: 28  DLEKDQEALKVYLEEIHDKMIS-FDDEIERLHYLVDNNFYFNVFEKYSE----AELI--- 79

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 80  ----EITEYAKSI----HFQFASYMSASKFYKDYALKTNDKTKFLEDYNQHVAIVALYLA 131

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                  K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 132 ---NGNVKQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 248

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 308

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + +   + Y+       I   +K  A  +   +     ++G+P++ FKD  N
Sbjct: 309 QEYGVTLDDID-LEKYYDDMVANPNIDKKKK-DAREMLNMIAQTQLQSGYPYLMFKDNAN 366

Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQF 616
                 ++G +  SNLCTEI        +N    E  +     CNLGS+N++    + +F
Sbjct: 367 KVHANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGEF 426

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
                  ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y 
Sbjct: 427 -----RDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYE 481

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S EA + A+     +++++I  S+E+A+ER   Y  F+ S +  G +         E + 
Sbjct: 482 SEEAKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKF 541

Query: 735 EL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E        ++  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 542 EKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQ 601

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  ++  + +      FL  E                                   + +A
Sbjct: 602 IERRTYGNAETFYPMPFLSPE-------------------------------TMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|251810164|ref|ZP_04824637.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|293368192|ref|ZP_06614821.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|251806216|gb|EES58873.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|291317615|gb|EFE58032.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 698

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/728 (24%), Positives = 304/728 (41%), Gaps = 83/728 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  LE++  ++++    + ++  +      Y   F +Y E    A L+   
Sbjct: 25  DLEKDQEALKVYLEEIHDKMIS-FDDEIERLHYLVDNNFYFNVFEKYSE----AELI--- 76

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 77  ----EITEYAKSI----HFQFASYMSASKFYKDYALKTNDKTKFLEDYNQHVAIVALYLA 128

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                  K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 129 ---NGNVKQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 185

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 186 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 245

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 246 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 305

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + +   + Y+       I   +K  A  +   +     ++G+P++ FKD  N
Sbjct: 306 QEYGVTLDDID-LEKYYDDMVANPNIDKKKK-DAREMLNMIAQTQLQSGYPYLMFKDNAN 363

Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQF 616
                 ++G +  SNLCTEI        +N    E  +     CNLGS+N++    +   
Sbjct: 364 KVHANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESG-- 421

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y 
Sbjct: 422 ---KFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYE 478

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S EA + A+     +++++I  S+E+A+ER   Y  F+ S +  G +         E + 
Sbjct: 479 SEEAKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKF 538

Query: 735 EL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E        ++  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 539 EKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQ 598

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  ++  + +      FL  E                                   + +A
Sbjct: 599 IERRTYGNAETFYPMPFLSPE-------------------------------TMWYYKSA 627

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 628 FNTDQMKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK- 686

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 687 LLSVEECT 694


>gi|222109642|ref|YP_002551906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
 gi|221729086|gb|ACM31906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
          Length = 813

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/637 (24%), Positives = 256/637 (40%), Gaps = 81/637 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
           + + +L ++YF           +  F RVA  LA  E E  ++A+E  F + L +     
Sbjct: 17  ISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G        I+ AL+E A   +  GG+G D++
Sbjct: 73  GRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 133 RIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFITA 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD FM+ V Q+  W L             G E +    + 
Sbjct: 193 KRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGA-------APGAELQAQGAHQ 241

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 242 RADGQ----WVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNPC 297

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDI 638
            E  L         C+LG I L     N         FD+D     + T VR LDNV+D+
Sbjct: 298 GEQPLPP----YGCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLDV 353

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  AS
Sbjct: 354 TFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRREGRDMAVQIAERMRNAAYRAS 413

Query: 699 VELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           VELA+E+GA+  F    +  +G F                    SRLP D ++K ++  G
Sbjct: 414 VELAKEKGAFPKFDADGYLAKGTF-------------------ASRLPAD-IQKAIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +   R  
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWSYTRRKREADGSK-SEYVVEDYAWRLY 512

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G + +       L     +A ++     +      Q ++D A S  +
Sbjct: 513 ---------KTLGGDVNH-------LPAYFVSAMDMAAADHVAMMEAVQPFVDTAISKTV 556

Query: 876 YLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            + E         +Y QAW  GLK     R  S    
Sbjct: 557 NVPEDYPYADFKGLYMQAWHSGLKGLATYRPNSILGA 593


>gi|332184135|gb|AEE26389.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida 3523]
          Length = 590

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/686 (28%), Positives = 287/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FMK V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMKAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S IR  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIRDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S +A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQLHRVPFESQKAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|27467431|ref|NP_764068.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866331|ref|YP_187990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis RP62A]
 gi|282875688|ref|ZP_06284559.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|27314974|gb|AAO04110.1|AE016745_209 ribonuceloside diphosphate reductase major subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636989|gb|AAW53777.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|281295715|gb|EFA88238.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|329723344|gb|EGG59874.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU144]
 gi|329737947|gb|EGG74171.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/723 (24%), Positives = 300/723 (41%), Gaps = 73/723 (10%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  LE++  ++++    + ++  +      Y   F +Y E    A L+   
Sbjct: 28  DLEKDQEALKVYLEEIHDKMIS-FDDEIERLHYLVDNNFYFNVFEKYSE----AELI--- 79

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 80  ----EITEYAKSI----HFQFASYMSASKFYKDYALKTNDKTKFLEDYNQHVAIVALYLA 131

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
                  K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 132 ---NGNVKQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 248

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVK 308

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + +   + Y+       I   +K  A  +   +     ++G+P++ FKD  N
Sbjct: 309 QEYGVTLDDID-LEKYYDDMVANPNIDKKKK-DAREMLNMIAQTQLQSGYPYLMFKDNAN 366

Query: 569 IRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
                 ++G +  SNLCTEI        +N    E  +    S NL +    N  +  K 
Sbjct: 367 KVHANSNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKF 426

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA 
Sbjct: 427 RDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAK 486

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--- 736
           + A+     +++++I  S+E+A+ER   Y  F+ S +  G +         E + E    
Sbjct: 487 DFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQ 546

Query: 737 ---AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               ++  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++
Sbjct: 547 LFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRT 606

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             + +      FL  E                                   + +AF  D 
Sbjct: 607 YGNAETFYPMPFLSPE-------------------------------TMWYYKSAFNTDQ 635

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M LI+  +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE
Sbjct: 636 MKLIDLVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVE 694

Query: 913 KST 915
           + T
Sbjct: 695 ECT 697


>gi|15923721|ref|NP_371255.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926408|ref|NP_373941.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus N315]
 gi|156979059|ref|YP_001441318.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|258418264|ref|ZP_05682529.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|258421561|ref|ZP_05684486.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|258430756|ref|ZP_05688468.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|258441752|ref|ZP_05691024.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|258445807|ref|ZP_05693984.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|258449618|ref|ZP_05697720.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|258454018|ref|ZP_05701990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282894499|ref|ZP_06302728.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|282926596|ref|ZP_06334226.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|13700622|dbj|BAB41919.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246500|dbj|BAB56893.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156721194|dbj|BAF77611.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|257839057|gb|EEV63536.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|257842487|gb|EEV66911.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|257849428|gb|EEV73398.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|257852221|gb|EEV76148.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|257855383|gb|EEV78321.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|257857126|gb|EEV80025.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|257863883|gb|EEV86639.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282591489|gb|EFB96561.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|282763212|gb|EFC03343.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|285816433|gb|ADC36920.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus aureus 04-02981]
          Length = 718

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 291/691 (42%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +  +F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 476 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 535

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 536 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 595

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 596 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 637 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 684

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 685 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 714


>gi|268315916|ref|YP_003289635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
 gi|262333450|gb|ACY47247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
          Length = 620

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/595 (25%), Positives = 255/595 (42%), Gaps = 56/595 (9%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTV-PDDLYGIFGALQ 388
            E+E+ + A  FY +L  F F+     L  +GTRH   L +CF+  +  D L GIF +L+
Sbjct: 55  PESERARWAERFYQVLYGFKFLPGGRILAGAGTRHRVTLFNCFVMGIIEDSLDGIFDSLK 114

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E A+  +  GG+G D++ +R  G     T   + G + F+ + +     +   G R+GA+
Sbjct: 115 EGALTMQQGGGVGYDFSTLRPAGTRARTTGTIASGPVSFMHIWDAMCATLLSTGARRGAM 174

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+E F+  +   G         N +  + D FM+ V ++A W L  P    
Sbjct: 175 MATLRCDHPDIETFVTAKHRPGV----LTHFNLSVQVFDEFMEAVRRDADWPLVFPAAA- 229

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D    +  I Y  +         +V R + A ALW ++L   ++   P + F D  N
Sbjct: 230 -LEDEGMGDGPIVYRRWTGTDGPVPCRVLRVVKARALWEQILRATYDYAEPGVLFIDTIN 288

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLAS 623
             +   +   + ++N C E  L         C+LGSINL              D++ +  
Sbjct: 289 RMNNLAYREHITATNPCGEQPLPP----YGACDLGSINLTRFVRAPFTPEADLDWEGIRE 344

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  AVR+LDNVID++   +    +     R IGLG+ G   AL +L + YAS EA ++A
Sbjct: 345 TVAVAVRMLDNVIDVSGFPLPAQAEQARGTRRIGLGITGLADALIMLGLHYASEEARQLA 404

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              M+ I   A   S+ LA+E+G +  F+   + +  F    I  L E            
Sbjct: 405 ARVMQTICHTAYRTSIALAREKGVFPFFERERYLESPF----IQALPE------------ 448

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
               +++K + T G+RNS+ ++IAPT TI+ +    S  I+P +   Y +  +  D    
Sbjct: 449 ----DIRKGIATYGIRNSHLLSIAPTGTISLLANNVSSGIEPVFAYRYTRYILGLDGERR 504

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L +   +  LW               G+ E +P+        A  +DP   ++  + 
Sbjct: 505 AYTLTDYALR--LWQRL-----------HGDSEMLPEA----FVDAQHLDPYDHLKMQAA 547

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            Q ++D A S  + +   +       +Y  A+  GLK     R           +
Sbjct: 548 LQPYVDGAISKTVNVPADTPFNAFRQLYDWAYDHGLKGCTTYRPSPVRGAVLEAI 602


>gi|86136293|ref|ZP_01054872.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
 gi|85827167|gb|EAQ47363.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
          Length = 765

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/656 (24%), Positives = 263/656 (40%), Gaps = 85/656 (12%)

Query: 296 LGLQILYDRY-FLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +  QI   +Y F   +G+ I+   +  + R+A  LA  E        +FY  L  F ++ 
Sbjct: 8   IAAQIWDMKYRFKEADGTPIDVTVEDSWRRIARDLARAEDNPGVWEEKFYEALEDFKYLP 67

Query: 354 STPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +      +GT     L +CF + TVPD + GIF  L+E A+  +  GG+G D++ +R  G
Sbjct: 68  AGRITAGAGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRG 127

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A + G    + G + F+ V +     +   G R+GA+ A +   H DVE F+  +     
Sbjct: 128 ADVKGVAADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFITAK----S 183

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D  R    N +  I D FM+ V  +  W L                              
Sbjct: 184 DSARLRMFNMSVLISDAFMEAVKADGSWELQF---------------------------- 215

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            + K++  + A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L 
Sbjct: 216 -DGKIYHTVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLP 274

Query: 592 SSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   C LGSIN+         +N + +   +   + TAVR++DNV+D++   +E  
Sbjct: 275 P----YGACLLGSINMARLVSNPFESNAELNQSAMQELVATAVRMMDNVVDVSKFPLEAQ 330

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
                  R IGLG+ G   AL +L + Y S  A    D  +  I+  A  ASV+LA+E+G
Sbjct: 331 AAEAQAKRRIGLGVTGLADALLMLGLEYGSDAAARQTDRWLHAIARAAYLASVDLAKEKG 390

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  F    +                   LA      +  +++++ ++  G+RN+   +I
Sbjct: 391 AFPLFDAEAY-------------------LASGNMMNMD-EDVREAIREHGIRNALLTSI 430

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+   G  S  I+P +   Y +  +  D +     +V+   Q  ++ E   +D  
Sbjct: 431 APTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVDYAVQ--MYREKFGTDAA 488

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKK 884
                          L      A  + P   ++  +  QKWID + S  +   E  S  +
Sbjct: 489 ---------------LPGYFVNAQTLPPAAHVKMQAAAQKWIDSSISKTINCPEDISFDE 533

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
              +Y QAW  G K     R    T    S  +  D            S     G 
Sbjct: 534 FKDVYMQAWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHESDMGENGA 589


>gi|154249118|ref|YP_001409943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153054|gb|ABS60286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
          Length = 841

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/693 (25%), Positives = 307/693 (44%), Gaps = 95/693 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKE------ 332
           L + +++ +D        +IL +RYFL   +G  +E        RVA  +A  E      
Sbjct: 5   LTSVIEHWKDVELSKNAYKILSERYFLKTPSGEFLEKSWDDICRRVARVIATAELVNNPE 64

Query: 333 ----------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT------------------- 363
                      E +     F++ L S  F+ ++PTLFN+G                    
Sbjct: 65  LKEKSPFEQLDEVKFWESTFFDFLKSRIFIPNSPTLFNAGMGVRHELLWKSIDDMTLEDY 124

Query: 364 --------RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                       LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + 
Sbjct: 125 WEIYNSRNHLHMLSACFVVPVEDSIEGIFEAVKEYALITKAGGGIGSNFSRLRPKGSFVA 184

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GT+G++ G + F+ V N     V QG +R+GA+   L   H D+EEF+  ++   D  + 
Sbjct: 185 GTHGQASGPVSFMHVFNSAVGVVEQGYRRRGALMGILNIDHPDIEEFITAKEGN-DGEKV 243

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  I                    +  +L  LY ++ EI       +    +  
Sbjct: 244 LKFFNISVGITM------------------DRQELLKLYMEDGEI-------ELKHPKCN 278

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             +++    L  K+    ++TG P + F    N          + S+N C EI L     
Sbjct: 279 GSKRVKVRELINKIAKNAWKTGDPGLAFLSEMNKYYAMYPEMTIESTNPCGEIGLAPYE- 337

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNLGSI++   + N +F ++  A   R AVR LD+VID+N   +EK +K+    R 
Sbjct: 338 ---ACNLGSIDVAKFYMNGEFYWEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSRR 394

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MGF   L+++ IPY S E  + A +   +++ H    S +LAQ +G++  F+ S 
Sbjct: 395 IGLGIMGFADLLYMMDIPYNSHEGRQFAADMTAYMAIHGHDESNKLAQLKGSFPLFEKSR 454

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD-ELKKRVK--TIGMRNSNCMAIAPTATI 772
           + +               DE A        +D ELK+  K    G RN   + IAPT +I
Sbjct: 455 YYRE--------------DEFAPFAMGMSKYDNELKEVFKESKKGKRNVAVLTIAPTGSI 500

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE--AMISDLKYHDGS 830
           +NI   S  ++P++   YV+     D T    F VN++ +  L  E    + D     GS
Sbjct: 501 SNIADTSSGLEPNFLLAYVRYMNKHDGTKEALFYVNKVLESKLNKEILERVKDKLVERGS 560

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
           + +I  IP+++K++  TA +I PM  +      Q+++D   S  + +    + + +  IY
Sbjct: 561 LQDIPEIPEEIKRVFVTAMDISPMDHLLMQDAFQRYVDNNISKTINMPNSATEEDVLNIY 620

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            +A  + ++     R  S  +   ++ K +  K
Sbjct: 621 LEAMKLNIRGLTIYRDGSLQTQVLTSAKNLKTK 653


>gi|330683859|gb|EGG95633.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU121]
          Length = 701

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/716 (23%), Positives = 290/716 (40%), Gaps = 73/716 (10%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             +  LE++  + +     + ++  +      Y   F +Y +  +            ++ 
Sbjct: 35  ALKVYLEEIHDKTIY-FDSEIERLHYLVDNNFYFNVFAKYSDSDL-----------VEIT 82

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE 336
             A  +    +F F  Y+     Y  Y L  N     +E        V+M LA  + +  
Sbjct: 83  EYAKSI----NFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAIVSMYLANGDKD-- 136

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
            +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 137 -QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + ++  E Y            +K  A  +   +     ++G+P++ FKD  N       
Sbjct: 316 DDIDL--EKYYDDMVANPNVEKKKKDAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSD 373

Query: 576 VGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T 
Sbjct: 374 IGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHTG 433

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 434 MDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFF 493

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNR 740
             +++++I  S+++A+ER   Y  F  S +  G +              +VR+       
Sbjct: 494 MMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFEI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 554 PTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL  E                                   + +AF  D M LI+  
Sbjct: 614 YPMPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLV 642

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 STIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|307244662|ref|ZP_07526766.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492043|gb|EFM64092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/712 (24%), Positives = 300/712 (42%), Gaps = 74/712 (10%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    +        + + +  +          +  ++ +  MDF +  L  
Sbjct: 20  YQLHKDKEALDLYLRDSIDGRSMKFESISDKIKYLVDNNYYEKEIIDKYSMDF-IGDLHE 78

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAV 340
            +K    F+F+ Y+     Y+ Y L  +     +E      +  ++ +A  +TE    A 
Sbjct: 79  YIK-SFGFSFQSYMSASKFYENYALKSDDGEYILEDYNDKILICSLAIANGDTE---VAK 134

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +    L    F  +TPT  N G +   +L SCFL TV D   GI  A+     L+K  GG
Sbjct: 135 KVAKRLIRQEFQPATPTFLNLGRKRAGELVSCFLLTVEDSCEGISYAVASANHLSKIGGG 194

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + T +R     I G  G S GV+   K+   +    NQ G R+GA   YL   H D 
Sbjct: 195 VALNLTRLRARAESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADF 254

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           +  +D +K   D+R R   ++    IPD+FM+   +N     F P  +   + L+  +  
Sbjct: 255 DALMDTKKINADERVRLATLSIGAIIPDVFMRLAEKNETGYAFYPHSIYKKYGLHLDDLN 314

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +  E Y++     +I+  ++I+      ++     E+G+P+I + D  N     + +G++
Sbjct: 315 ME-EWYDKLVADPDIRK-KEINPRQYLTRIAATQMESGYPYIVYIDTANRDHTLKDLGMI 372

Query: 580 HSSNLCTEITLNSSSEE-------------TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             SNLC EI       +                CNLGS+N++    + + D       I 
Sbjct: 373 RMSNLCCEIFQYQEPSQIESYGSSASQWGQDVSCNLGSLNIVNLMESKEVD-----KAID 427

Query: 627 TAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TAVR L +V D    H +   K  N    +IGLG M     L   +I Y + EAVE AD 
Sbjct: 428 TAVRFLTDVSDRTDIHQVPTIKMGNDKSHSIGLGAMNLHGYLMKNNIMYVTDEAVEFADV 487

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL 736
               + ++AI  S+E+A+ER   +  F+ S + +G         + +D      +V+   
Sbjct: 488 FFAMMRYYAIKTSMEIARERKETFEGFEKSEYAKGRASDVLGKYYEVDFRPKSDKVKKLF 547

Query: 737 -AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    +  W +L   VK +G+ N+  MAIAPT +I+ +   + SI P  + + V+  +
Sbjct: 548 EGIYVPDKNDWAKLLDEVKEVGIYNAYLMAIAPTQSISYVQNSTSSIMPITEQIEVR--I 605

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            GD T +                               +  + ++    + +A+  D   
Sbjct: 606 YGDSTTIYP-----------------------------MPFLTNENMLFYRSAYNTDMFK 636

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +I+  +  Q  +DQ  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 637 VIDVVAAAQGHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 688


>gi|297245178|ref|ZP_06929052.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297177849|gb|EFH37098.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
          Length = 721

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 291/691 (42%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +  +F    Y+     +  Y L 
Sbjct: 69  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALK 128

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 129 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 185

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 186 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 245

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 246 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 305

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 306 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 363

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 364 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 423

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 424 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 478

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 479 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 538

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 539 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 598

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 599 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 639

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 640 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 687

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 688 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 717


>gi|75758222|ref|ZP_00738347.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494276|gb|EAO57367.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 694

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/681 (24%), Positives = 292/681 (42%), Gaps = 67/681 (9%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRI-- 314
           +Y+ E      +     + ++  +     Y   F F+ Y+     Y  Y L  +  +I  
Sbjct: 49  KYLIEHNYYYNVFGEYTEEEVQRIYEA-AYTHKFEFQSYMAATKFYKDYSLRSDDKKIYL 107

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFL 373
           E  +     VA+ LA   T+K   A+ + N +   ++  +TPT  NSG     +L SCFL
Sbjct: 108 EDYEDRAAIVALYLASGNTKK---ALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFL 164

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D L  I   L     L+K  GG+  + + +RG    I G    + GV+P +K+  D
Sbjct: 165 LEMDDSLNSINYNLSVAKQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMED 224

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   +NQ G+R GA  AYL  +H D+ EFLD +K   D++ R   ++     P  F +  
Sbjct: 225 SFSYINQLGQRPGAGAAYLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLA 284

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTM 552
            QN    LF+P  V   + ++  + +   E Y+       ++  +  ++A  +  K+ T+
Sbjct: 285 EQNKEMYLFAPATVYKAYGVHLDDMD-LDEKYDELVANPMVRKRKLDLTAREMLVKIATI 343

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVC 600
             E+G+P+   K   N + P + +G V  SNLCTEI     +                 C
Sbjct: 344 QLESGYPYFMNKTNANEQHPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISC 403

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLG 659
            LGS+N++    N       +   + T + +L +V D +        KK+N T  ++GLG
Sbjct: 404 VLGSLNIVNVMENK-----DVKEAVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLG 458

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQ 718
            M     L    IPY S +A + A      +++H+I  S E+A+ERG ++  F+ S + +
Sbjct: 459 TMNLHGFLAKNFIPYESEDAKDFARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAK 518

Query: 719 GVFPIDS-----IGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G +         +    +V+     +   +   W+ L K+V+  G+ +S  +AIAP  + 
Sbjct: 519 GTYFEKYLTTEFLPQSEKVKKLFEGIQIPTTADWERLMKQVQRDGLYHSYRLAIAPNQSS 578

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             +   + S+ P    +  +S           +    L ++  +                
Sbjct: 579 GYVQNATPSVMPIVDKVETRSTDKATTYYPMPY----LSKQTFFS--------------- 619

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQ 891
                       + +A+E+D M +I+  +  Q  +DQ  S  L+  +  S + L   Y  
Sbjct: 620 ------------YKSAYEMDQMKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIY 667

Query: 892 AWLMGLKTTYYLRSRSATSVE 912
           A   GLK+ YY R+ ++T  E
Sbjct: 668 AEKKGLKSLYYTRTSNSTIEE 688


>gi|295406452|ref|ZP_06816258.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|294968597|gb|EFG44620.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
          Length = 698

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 291/691 (42%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +  +F    Y+     +  Y L 
Sbjct: 46  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALK 105

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 106 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 162

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 163 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 222

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 223 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 282

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 283 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 340

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 341 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 400

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 401 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 456 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 515

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 516 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 575

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 576 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 617 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 664

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 665 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 694


>gi|151220912|ref|YP_001331734.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257424851|ref|ZP_05601278.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427519|ref|ZP_05603918.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430150|ref|ZP_05606534.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432851|ref|ZP_05609211.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435755|ref|ZP_05611803.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|258452939|ref|ZP_05700933.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282903361|ref|ZP_06311252.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905139|ref|ZP_06312997.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908117|ref|ZP_06315948.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910376|ref|ZP_06318180.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913571|ref|ZP_06321360.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282922027|ref|ZP_06329724.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282923490|ref|ZP_06331170.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283769894|ref|ZP_06342786.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283957563|ref|ZP_06375016.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500616|ref|ZP_06666467.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509564|ref|ZP_06668275.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524150|ref|ZP_06670837.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|150373712|dbj|BAF66972.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257272421|gb|EEV04544.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275712|gb|EEV07185.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279347|gb|EEV09948.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282266|gb|EEV12401.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284946|gb|EEV15065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257859450|gb|EEV82304.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282314358|gb|EFB44748.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322603|gb|EFB52925.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325768|gb|EFB56076.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327782|gb|EFB58064.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331964|gb|EFB61475.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282593685|gb|EFB98677.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282596316|gb|EFC01277.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283460041|gb|EFC07131.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283791014|gb|EFC29829.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921113|gb|EFD98174.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095621|gb|EFE25882.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467661|gb|EFF10176.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
          Length = 718

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 476 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 535

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 536 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 595

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 596 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 637 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 684

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 685 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 714


>gi|239636655|ref|ZP_04677657.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
 gi|239598010|gb|EEQ80505.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
          Length = 701

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/716 (23%), Positives = 290/716 (40%), Gaps = 73/716 (10%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             +  LE++  + +     + ++  +      Y   F +Y +  +            ++ 
Sbjct: 35  ALKVYLEEIHDKTIY-FDSEIERLHYLVDNNFYFNVFEKYSDSDL-----------VEIT 82

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE 336
             A  +    +F F  Y+     Y  Y L  N     +E        V+M LA  + +  
Sbjct: 83  EYAKSI----NFQFASYMSASKFYKDYALKTNDKQQYLEDYNQHVAIVSMYLANGDKD-- 136

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
            +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I         L+K
Sbjct: 137 -QAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            + ++  E Y            +K  A  +   +     ++G+P++ FKD  N       
Sbjct: 316 DDIDL--EKYYDDMVANPNVEKKKKDAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSD 373

Query: 576 VGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T 
Sbjct: 374 IGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHTG 433

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 434 MDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFF 493

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNR 740
             +++++I  S+++A+ER   Y  F  S +  G +              +VR+       
Sbjct: 494 MMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFEI 553

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 554 PTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL  E                                   + +AF  D M LI+  
Sbjct: 614 YPMPFLSPE-------------------------------TMWYYKSAFNTDQMKLIDLV 642

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 STIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|148267191|ref|YP_001246134.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393240|ref|YP_001315915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253315836|ref|ZP_04839049.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255005522|ref|ZP_05144123.2| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794948|ref|ZP_05643927.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|296275140|ref|ZP_06857647.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MR1]
 gi|147740260|gb|ABQ48558.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945692|gb|ABR51628.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|257788920|gb|EEV27260.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|312829223|emb|CBX34065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129413|gb|EFT85406.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329724567|gb|EGG61074.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 701

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 291/691 (42%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +  +F    Y+     +  Y L 
Sbjct: 49  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALK 108

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 109 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 165

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 166 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 225

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 226 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 285

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 286 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 343

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 344 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 403

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 404 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 458

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 459 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 518

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 519 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 578

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 579 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 619

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 620 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 667

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 668 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 697


>gi|254374387|ref|ZP_04989869.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
 gi|151572107|gb|EDN37761.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
          Length = 590

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSNVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|255307976|ref|ZP_05352147.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile ATCC 43255]
          Length = 699

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/705 (23%), Positives = 304/705 (43%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG  ++ +  +    D++    D+  + 
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEV-INQYSIDVIKNIYDMIDKH 82

Query: 290 DFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ Y+     Y  Y L  N     +E      + VA+ L   + +    A+   + +
Sbjct: 83  KFEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLGNGDKD---LALNLADKI 139

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G +   ++ SCFL +V D   GI  A+  +  L+K  GG+  + +
Sbjct: 140 VKQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D 
Sbjct: 200 KLRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y
Sbjct: 260 KKINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC
Sbjct: 319 DKLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  E               CNLGS+N+      N  D   + ST+ TA+R L 
Sbjct: 378 CEIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALS 432

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +     SN    +IGLG M     L   +I Y S +A++ ++     + +
Sbjct: 433 FVADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRY 492

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL-AMNRTS 742
           ++I AS+++A E    +  F  S + +G         +    +    +VR     +   +
Sbjct: 493 YSIKASMKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V+    GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + +D    + +A+ +D   +I+  + 
Sbjct: 611 YP-----------------------------MPFLTNDNMLYYQSAYRMDMRKVIDLVAT 641

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  +DQ  S  L+  DE + + +   Y  A+  GLK+ YY R++
Sbjct: 642 VQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|329767979|ref|ZP_08259490.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838464|gb|EGF88072.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 696

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/711 (24%), Positives = 295/711 (41%), Gaps = 61/711 (8%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
            KL ++V        +            +     +EE     +  + + D  L  L  +L
Sbjct: 22  FKLEKDVEAIEEFLREVDFRTVKFSSEMKRLRYLVEENFYYNIFDKYIEDEILECL--EL 79

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMP---QAFFMRVAMGLALKETEKEKRAVE 341
                F F  Y+     Y  Y L  N  +  +    Q  F+ VAM LA  +      A E
Sbjct: 80  AANFKFEFKSYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLADGDV---ALAKE 135

Query: 342 FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               +       +TPT  NSG  R  +L SCFL  V D L  I         L+K  GG+
Sbjct: 136 LMISMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G  G ++GVIP  K         +Q G+R GA   YL  +H DV 
Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D+  R   ++T   +P LF     +N  + +F P  + + + L   + +I
Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           A   Y  +    E  + RK  A  +   +     ++G+P++ FKD  N     + +G V 
Sbjct: 316 A--KYYDEFVANENIMKRKFDARDMLNLIAQTQLQSGYPYLMFKDNANKDHALREIGQVK 373

Query: 581 SSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLCTEI             E+  +    S NL +    N  +  K+  +I + +  L 
Sbjct: 374 MSNLCTEIFQLQETSIIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +           K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLP 745
           + +  S+++A++R   +  F+ S +  G +       D + +  +V++    ++  +R  
Sbjct: 494 YTLERSMQIAKKRNETFKDFEKSDYYNGRYFTKYIENDYLPVTDKVKELFEGIHIPTRED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +      +
Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  +                                +  + +AF ID M LI+  +  Q+
Sbjct: 614 LSPK-------------------------------TQWFYKSAFTIDQMKLIDLMAVIQE 642

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +DQ  S+ L+++   + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|86156144|gb|ABC86790.1| ribonucleotide reductase alpha subunit [Borrelia turicatae]
          Length = 691

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/702 (23%), Positives = 304/702 (43%), Gaps = 83/702 (11%)

Query: 237 YKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
           +K P +  H+ +   LY  ++  Y EE +       S+ +F                  Y
Sbjct: 41  FKNPNERMHYLIDNDLYENFYENYSEEQILEIYNLVSLENFQFK--------------SY 86

Query: 296 LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFM 352
           +     Y  Y L +N     +E  +   + V++ LA    +   K A+E    +    + 
Sbjct: 87  MSASKFYKDYALKMNDGNTYLESYEDRIIAVSLFLADGCFDFALKLALE----MIKQRYQ 142

Query: 353 CSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N+G +   +L SCFL  V D L  I   +     L+K  GG+  + + +R  G
Sbjct: 143 PATPTFLNAGKKVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALNLSNIRARG 202

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+FLD +K   D
Sbjct: 203 EEIRGIPNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFLDTKKINAD 262

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           ++ R   ++    IPD F     Q   +  F+P  +      +  E +   E Y+  A  
Sbjct: 263 EKSRVQTLSLGVIIPDKFFDIAKQGKNYYAFAPYSLYKATGRFMNEIDFDLE-YDLFASD 321

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
             I + +++SA  +  ++  + FE+G+P+I ++  CN+ +P + +G +  SNLCTEI   
Sbjct: 322 PRI-LKKELSARDILIRIARLQFESGYPYIVYQTACNLNNPLKGLGKIKMSNLCTEIFQI 380

Query: 592 SSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            +                  C LGS+N++    +          T+  A+R L +V+D  
Sbjct: 381 QTPSVIGDYGEEDLIGYDISCILGSLNIVNVINS------DFEHTVDIAMRALTSVVDKA 434

Query: 640 -CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                   +K+N+ + A+GLG+M     L    I Y S EA++        ++F+++ +S
Sbjct: 435 DIKNAPSIRKANNDYHAVGLGVMNLHGFLIKNKISYESAEALDFVRTFFMLLNFYSLKSS 494

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKK 751
           + +A++R  A+  F  S +  G +    +      + ++       +    +  W+ LK+
Sbjct: 495 MNIARDRGCAFKDFNKSEYYNGNYFDMYLSEDFTPKTDVIKQIFSGLKLPLKSDWESLKR 554

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V+  G+ +S  +A+APT +I+ +   + S+ P  + +  +   +        +L  E  
Sbjct: 555 DVQIHGLYHSYRLAVAPTQSISYVQNATTSLMPIVEPVEARVYGNSTTYYPMPYLNRENA 614

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                           +  +A+ +D   LI+  S  Q+ +DQ  
Sbjct: 615 L-------------------------------LFKSAYYMDMKKLIDLISEAQRHVDQGI 643

Query: 872 SLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           S  LY  +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 644 STLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 685


>gi|88194507|ref|YP_499302.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|294849401|ref|ZP_06790144.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295427308|ref|ZP_06819943.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|87202065|gb|ABD29875.1| ribonucleotide-diphosphate reductase alpha chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|294823933|gb|EFG40359.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295128696|gb|EFG58327.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 721

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 69  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 128

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 129 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 185

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 186 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 245

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 246 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 305

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 306 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 363

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 364 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 423

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 424 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 478

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 479 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 538

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 539 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 598

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 599 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 639

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 640 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 687

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 688 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 717


>gi|82750435|ref|YP_416176.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus RF122]
 gi|82655966|emb|CAI80370.1| ribonucelotide diphosphate reductase alpha chain [Staphylococcus
           aureus RF122]
          Length = 698

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 46  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 105

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 106 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 162

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 163 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 222

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 223 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 282

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 283 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 340

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 341 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 400

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 401 IQRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 456 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 515

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 516 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 575

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 576 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 617 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 664

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 665 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 694


>gi|315194350|gb|EFU24742.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 701

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 49  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 108

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 109 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 165

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 166 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 225

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 226 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 285

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 286 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 343

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 344 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 403

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 404 IKRDISCNLGSLNIVNLMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 458

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 459 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 518

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 519 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 578

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 579 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 619

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 620 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 667

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 668 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 697


>gi|332678272|gb|AEE87401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida Fx1]
          Length = 590

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|253731357|ref|ZP_04865522.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724882|gb|EES93611.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|302750628|gb|ADL64805.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|320139938|gb|EFW31799.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141973|gb|EFW33801.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 698

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 46  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 105

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 106 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 162

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 163 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 222

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 223 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 282

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 283 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 340

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 341 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 400

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 401 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 456 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 515

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 516 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 575

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 576 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 617 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 664

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 665 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 694


>gi|21282422|ref|NP_645510.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482988|ref|YP_040212.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485603|ref|YP_042824.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651568|ref|YP_185667.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160290|ref|YP_493419.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|161508996|ref|YP_001574655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141145|ref|ZP_03565638.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253732822|ref|ZP_04866987.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|284023752|ref|ZP_06378150.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 132]
 gi|297208542|ref|ZP_06924971.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297590339|ref|ZP_06948978.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912634|ref|ZP_07130077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|14329709|emb|CAC40667.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus]
 gi|21203859|dbj|BAB94558.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241117|emb|CAG39795.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244046|emb|CAG42472.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285754|gb|AAW37848.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126264|gb|ABD20778.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|160367805|gb|ABX28776.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253729187|gb|EES97916.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|269940308|emb|CBI48685.1| ribonucleoside-diphosphate reductase alphachain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|283470025|emb|CAQ49236.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|296886797|gb|EFH25701.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297576638|gb|EFH95353.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694062|gb|ADI97284.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886880|gb|EFK82082.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332441|gb|ADL22634.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438844|gb|ADQ77915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315196403|gb|EFU26754.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|329313452|gb|AEB87865.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728551|gb|EGG64984.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 701

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 49  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 108

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 109 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 165

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 166 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 225

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 226 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 285

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 286 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 343

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 344 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 403

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 404 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 458

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 459 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 518

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 519 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 578

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 579 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 619

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 620 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 667

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 668 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 697


>gi|118497573|ref|YP_898623.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. novicida U112]
 gi|195536269|ref|ZP_03079276.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208779371|ref|ZP_03246717.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
 gi|254372934|ref|ZP_04988423.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423479|gb|ABK89869.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           novicida U112]
 gi|151570661|gb|EDN36315.1| ribonucleoside-diphosphate reductase [Francisella novicida
           GA99-3549]
 gi|194372746|gb|EDX27457.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208745171|gb|EDZ91469.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
          Length = 590

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|282918524|ref|ZP_06326261.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282317658|gb|EFB48030.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
          Length = 718

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 172/691 (24%), Positives = 289/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 476 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 535

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              + R+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 536 EKSDYANGKYFEFYTTQEFEPQFEKARELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 595

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 596 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 637 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 684

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 685 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 714


>gi|89256332|ref|YP_513694.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314780|ref|YP_763503.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502406|ref|YP_001428471.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010838|ref|ZP_02275769.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367667|ref|ZP_04983688.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|290952875|ref|ZP_06557496.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313920|ref|ZP_06804485.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144163|emb|CAJ79425.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129679|gb|ABI82866.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253478|gb|EBA52572.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|156253009|gb|ABU61515.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 590

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|323438920|gb|EGA96655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O11]
 gi|323441868|gb|EGA99508.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O46]
          Length = 698

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/691 (25%), Positives = 290/691 (41%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 46  FFDTEIERLSYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 105

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 106 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 162

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 163 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 222

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 223 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 282

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 283 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 340

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 341 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 400

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 401 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 455

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 456 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 515

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 516 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 575

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 576 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                              + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 617 ------------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 664

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 665 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 694


>gi|255102107|ref|ZP_05331084.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-63q42]
          Length = 699

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/705 (23%), Positives = 303/705 (42%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  +   +    +   L  E     I+EG  ++ +  +    D++    D+  + 
Sbjct: 25  KEALSSYIEAFIQPKLRKFNNL-EERLKYLIDEGYYSKEV-INQYSIDVIKNIYDMIDKH 82

Query: 290 DFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ Y+     Y  Y L  N     +E      + VA+ L   + +    A+   + +
Sbjct: 83  KFEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLGNGDKD---LALNLADKI 139

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G +   ++ SCFL +V D   GI  A+  +  L+K  GG+  + +
Sbjct: 140 VKQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D 
Sbjct: 200 KLRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y
Sbjct: 260 KKINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC
Sbjct: 319 DKLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  E               CNLGS+N+      N  D   + ST+ TA+R L 
Sbjct: 378 CEIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALS 432

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +     SN    +IGLG M     L   +I Y S +A++ ++     + +
Sbjct: 433 FVADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRY 492

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL-AMNRTS 742
           ++I AS+++A E    +  F  S + +G         +    +    +VR     +   +
Sbjct: 493 YSIKASMKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V+    GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + +D    + +A+ +D   +I+  + 
Sbjct: 611 YP-----------------------------MPFLTNDNMLYYQSAYRMDMRKVIDLVAT 641

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  +DQ  S  L+  DE + + +   Y  A+  GLK+ YY R++
Sbjct: 642 VQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|254976541|ref|ZP_05273013.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-66c26]
 gi|255093926|ref|ZP_05323404.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CIP 107932]
 gi|255315678|ref|ZP_05357261.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-76w55]
 gi|255518339|ref|ZP_05386015.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-97b34]
 gi|255651456|ref|ZP_05398358.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-37x79]
 gi|260684516|ref|YP_003215801.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile CD196]
 gi|260688174|ref|YP_003219308.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile R20291]
 gi|306521279|ref|ZP_07407626.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-32g58]
 gi|260210679|emb|CBA65437.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CD196]
 gi|260214191|emb|CBE06440.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile R20291]
          Length = 699

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/705 (23%), Positives = 303/705 (42%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG   + +  +    D++    D+  + 
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYLKEV-INQYSIDVIKNIYDMIDKH 82

Query: 290 DFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ Y+     Y  Y L  N     +E      + VA+ L   + +    A+   + +
Sbjct: 83  KFEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLGNGDKD---LALNLADKI 139

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G +   ++ SCFL +V D   GI  A+  +  L+K  GG+  + +
Sbjct: 140 VKQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D 
Sbjct: 200 KLRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y
Sbjct: 260 KKINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC
Sbjct: 319 DKLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  E               CNLGS+N+      N  D   + ST+ TA+R L 
Sbjct: 378 CEIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALS 432

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +     SN    +IGLG M     L   +I Y S +A++ ++     + +
Sbjct: 433 FVADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRY 492

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL-AMNRTS 742
           ++I AS+++A E    +  F  S + +G         +    +    +VR     +   +
Sbjct: 493 YSIKASMKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V+    GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + +D    + +A+ +D   +I+  + 
Sbjct: 611 YP-----------------------------MPFLTNDNMLYYQSAYRMDMRKVIDLVAT 641

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  +DQ  S  L+  DE + + +   Y  A+  GLK+ YY R++
Sbjct: 642 VQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|269202351|ref|YP_003281620.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074641|gb|ACY10614.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 701

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/690 (25%), Positives = 290/690 (42%), Gaps = 72/690 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLHI 309
           F   IE              FD+   A+ +    Y +  +F    Y+     +  Y L  
Sbjct: 50  FDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALKT 109

Query: 310 NGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHP 366
           N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R  
Sbjct: 110 NDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRG 166

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+P
Sbjct: 167 ELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGIAKGVLP 226

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P
Sbjct: 227 IAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVP 286

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             F     +   + +F+P  V + + +   + ++  E Y            +K +A  + 
Sbjct: 287 SKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREML 344

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV 599
             +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  +
Sbjct: 345 NLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEI 404

Query: 600 -----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653
                CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N   
Sbjct: 405 KRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSEL 459

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712
            ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F+
Sbjct: 460 HSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFE 519

Query: 713 GSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +AI
Sbjct: 520 KSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAI 579

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    +  ++  + +      FL                    
Sbjct: 580 APTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL-------------------- 619

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
                             + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++L
Sbjct: 620 -----------SPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTREL 668

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 669 ARLYVYAHYKGLKSLYYTRNK-LLSVEECT 697


>gi|302879218|ref|YP_003847782.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
 gi|302582007|gb|ADL56018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
          Length = 942

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/670 (24%), Positives = 275/670 (41%), Gaps = 80/670 (11%)

Query: 294 EYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHF 351
           + + +++L ++Y         E        RVA GLAL E   ++    E + L     F
Sbjct: 3   QEISIEVLLEKYA-----EPGELSVSDVRRRVARGLALAEKPDQRAHWEEAFYLAQENGF 57

Query: 352 MCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGI-------FGALQENAMLAKYSGGLGND 403
           + +      +G      L +CF+  V D + GI       + ALQ+ A   +  GG+G D
Sbjct: 58  VPAGRINSAAGLAIQATLINCFVQPVGDAISGITDGKPGIYDALQQAAETMRRGGGVGYD 117

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + GTN ++ G I +++V + +   V   G R+GA    L   H D+E+F+
Sbjct: 118 FSTIRPEGALVKGTNSRASGPISYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEKFI 177

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
                +  D+    + N +  + D  M+ V  ++ + L    E +      G        
Sbjct: 178 -----SAKDKGDLRNFNISVGVTDALMQAVEADSDFELVHTAEPAAALRDAGAT------ 226

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       ++R++ A  LWR+++   ++   P + F D  N  +   +  V+ ++N
Sbjct: 227 -----QRADGRWIYRRVRATDLWRQIIESTYDHAEPGVLFIDLMNRDNNLSYCEVIEATN 281

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         C LGSINL     N       FDY+     I+ AVR+LDNV+D+
Sbjct: 282 PCAEQPLPP----YGCCCLGSINLTRMVKNPFSTHAGFDYEPFKQLIKVAVRMLDNVLDV 337

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R IGLG  G   AL +L + Y + EA   A +    +   A +AS
Sbjct: 338 TAWPLPEQQLEAQNKRRIGLGYTGLGDALVMLGLRYDTEEARAFAADITRIMRDEAYAAS 397

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           +EL++ERGA+       +                    A    SRLP DE+K  ++  G+
Sbjct: 398 IELSKERGAFPLLDAEHY------------------LAAPRFASRLP-DEMKNHIREYGI 438

Query: 759 RNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++IAPT TI+       S  I+P++   Y +     D T  + + V +   R   
Sbjct: 439 RNSHLLSIAPTGTISLAFADNASNGIEPAFSWFYTRKKRMMDGTSKD-YSVEDHAWRVF- 496

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                   K   G + +       L +   +A EI  +  ++  +    +ID + S  + 
Sbjct: 497 --------KKQGGDVSH-------LPEAFVSALEIPALDHMKMCAAVAPYIDTSISKTVN 541

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS-TLKGVDGKLNAVPVTDPNSS 934
           +      +    +Y +AW  GLK     R  S      S T +   G++    V D +  
Sbjct: 542 VPADYPFEDFKNLYTEAWRAGLKGLATYRPNSVLGSVLSITPEPKKGEIPQDFVFDQDRR 601

Query: 935 THSLGIPSSC 944
                 P   
Sbjct: 602 IELEAAPKPA 611


>gi|224475872|ref|YP_002633478.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420479|emb|CAL27293.1| ribonuceloside diphosphate reductase alpha chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 698

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/704 (23%), Positives = 290/704 (41%), Gaps = 79/704 (11%)

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
              + ++  +      Y + F +Y EE +K        + F                  Y
Sbjct: 47  FDSEIERLHYLVDNDFYVDVFAQYSEEDLKELTDFARSIPFKFA--------------SY 92

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +     +  Y L  N  +  +E        V++ LA  + E+ ++ +     +    +  
Sbjct: 93  MSASKFFKDYALKTNDKKQYLEDYSQHVTIVSLYLADGDKEQARQFISS---MIEQRYQP 149

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G  R  +L SCFL  V D L  I         L+K  GG+  + + +R  G 
Sbjct: 150 ATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGE 209

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+
Sbjct: 210 AIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADE 269

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R   ++T   +P  F +       + +F+P  V + + +   + +   + Y+      
Sbjct: 270 DIRLSTISTGLIVPAKFFELAKNGEDFYMFAPHTVYNEYGVTLDDID-LDKYYDDMVKNP 328

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---- 588
            I   +K  A  +   +     ++G+P++ FKD  N      ++G +  SNLCTEI    
Sbjct: 329 NILKHKK-DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQ 387

Query: 589 ---TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
               +N    E  +     CNLGS+N++    +      K   ++ T +  L  V D  N
Sbjct: 388 ETSVINDYGIEDEIKRDISCNLGSLNIVNVMESG-----KFRDSVHTGMDALTVVSDEAN 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     +++++I  S+
Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNQIGYESEEAKDFANIFFMTMNYYSIERSM 502

Query: 700 ELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDEL-AMNRTSRLPWDELKKR 752
           + A+ER  AY  F  S +  G +       D +    +V+     +   +   W  L+K 
Sbjct: 503 QTAKERGQAYQDFDKSDYASGKYFEKYTQADIVPEYEKVKSLFEGLEIPTAEDWKTLEKD 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           VK  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      FL      
Sbjct: 563 VKEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETFYPMPFL------ 616

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                           + +AF  D M LI+  +  Q+ +DQ  S
Sbjct: 617 -------------------------SPQTMWYYKSAFNTDQMRLIDLVATIQQHVDQGIS 651

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             LY++ E S ++L  +Y  A   GLK+ YY R++  +  E ++
Sbjct: 652 TILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNKLLSVDECTS 695


>gi|314933043|ref|ZP_07840409.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
 gi|313654362|gb|EFS18118.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
          Length = 701

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/728 (24%), Positives = 299/728 (41%), Gaps = 83/728 (11%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    +   +  L+++  + +     + ++  +      Y   F +Y EE ++       
Sbjct: 28  DLEKDQEALKVYLKEIHDKTIY-FDDEIERLHYLVDNDFYFNVFEKYSEEELR------- 79

Query: 273 MMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLA 329
               ++   A  +     F F  Y+     Y  Y L  N     +E        VA+ LA
Sbjct: 80  ----EITEYAKSI----HFQFASYMSASKFYKDYALKTNDKSQFLEDYNQHVAIVALYLA 131

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQ 388
             +T   K+A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  I     
Sbjct: 132 NGDT---KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDS 188

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA 
Sbjct: 189 TAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAG 248

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V 
Sbjct: 249 AVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKERKDFYMFAPHTVK 308

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             + +   + +   + Y+       I   +K  A  +   +     ++G+P++ FKD  N
Sbjct: 309 QEYGVTLDDID-LEKYYDDMVANPNIDKKKK-DAREMLNTIAQTQLQSGYPYLMFKDNAN 366

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQF 616
                  +G +  SNLCTEI     +                 CNLGS+N++    +   
Sbjct: 367 KVHANSDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESG-- 424

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              K   ++ T +  L  V D  N       KK+N    ++GLG+M     L    I Y 
Sbjct: 425 ---KFKDSVHTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYE 481

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S EA + A+     +++++I  S+E+A+ER  +Y  F  S +  G +         E + 
Sbjct: 482 SEEAKDFANIFFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSQEFEPQF 541

Query: 735 EL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E        ++  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    
Sbjct: 542 EKVRQLFDGLDIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQ 601

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  ++  + +      FL  E                                   + +A
Sbjct: 602 IERRTYGNAETFYPMPFLSPE-------------------------------TMWYYKSA 630

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           F  D M LI+  S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++ 
Sbjct: 631 FNTDQMKLIDLVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK- 689

Query: 908 ATSVEKST 915
             SVE+ T
Sbjct: 690 LLSVEECT 697


>gi|319761225|ref|YP_004125162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
 gi|317115786|gb|ADU98274.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
          Length = 811

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/663 (23%), Positives = 261/663 (39%), Gaps = 81/663 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV--EFYNLLSSFHFMC 353
           + + +L ++YF           +  F RVA  LA  E E  + A+   F + L +     
Sbjct: 17  ISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIGA 72

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G        I+ AL+E A   +  GG+G D++
Sbjct: 73  GRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 133 RIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFITA 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD FM+ V Q+  W L                 E+  E  
Sbjct: 193 KRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVHSAAPG---------AELLKEGA 239

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            ++AD     ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 240 RQRADG--QWIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNPC 297

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDI 638
            E  L         C+LG I L     N         FD+D     + T VR LDNV+D+
Sbjct: 298 GEQPLPP----YGCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLDV 353

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  AS
Sbjct: 354 TFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRAS 413

Query: 699 VELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           VELA+E+GA+  F+   +  +G F                    SRLP ++++K+++  G
Sbjct: 414 VELAKEKGAFPKFQADGYLAKGTF-------------------ASRLP-EDIQKQIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +   R  
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSK-SEYVVEDYAWRLY 512

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G +       + L     +A ++     +      Q ++D A S  +
Sbjct: 513 ---------KTLGGDV-------NQLPAYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E         +Y QAW   LK     R  S                   P  +P   
Sbjct: 557 NVPEDYPYADFKGLYMQAWHSRLKGLATYRPNSILGAVLEVPAAEAKPAKGEPAPEPAQP 616

Query: 935 THS 937
              
Sbjct: 617 VDP 619


>gi|226312722|ref|YP_002772616.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
 gi|226095670|dbj|BAH44112.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
          Length = 694

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/685 (24%), Positives = 287/685 (41%), Gaps = 67/685 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     IE      +        + V     L Y+ DF F  Y+ +   Y  Y L  N 
Sbjct: 46  KERMDYLIENDFYENV--YETYTVEQVDEVFRLAYDADFQFASYMAISKFYKDYALKTND 103

Query: 312 SRIEMPQ--AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
             + + Q       VA+ L   + +  KR       +       +TPT  N+G  R  ++
Sbjct: 104 KSMYLEQYPDRVAVVALSLGQGDFDLAKRLTVS---MMDQRLQPATPTFLNAGKSRRGEM 160

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D L  I   L     L+K  GG+  + + +RG G  I G  G ++GV+P L
Sbjct: 161 VSCFLLEMDDSLNSINFILGTCMQLSKIGGGVAVNLSKLRGRGEPIKGVEGAAKGVMPVL 220

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     +Q G+RKG+  AY   +  D+ EFLD +K   D++ R   ++    +P++
Sbjct: 221 KLLEDAFSYADQMGQRKGSGAAYYNIFGWDINEFLDCKKINADEKARIKTLSIGLIVPNV 280

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F K   +N   T+F+P  V   + ++  + +   E YE       IK    +SA  +  K
Sbjct: 281 FYKLAEENKPLTVFAPYSVYKEYGVHLDDMD-LDEMYEELLANDRIKKKTVMSAREMLTK 339

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  +  E+G+P+I  K   N     + +G V  SNLCTEI     +              
Sbjct: 340 IAMIQMESGYPYIMNKTNANNNHALKDLGSVKMSNLCTEIFQLQETSTITNYGEMDIIRR 399

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNL S+N++            +  ++   +  +  V D+         +K+N    +
Sbjct: 400 DISCNLASLNIVNVMERKM-----IRESVHEGIEAITAVSDMTRVENAPGVQKANRELHS 454

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714
           +GLG M     L    I Y S EA + A      ++F+++  S+E+A+E G  +  F+ S
Sbjct: 455 VGLGAMNLNGYLAKNRIAYESEEAKDFARTFFMMMNFYSLEKSMEIARETGMTFLGFEQS 514

Query: 715 LWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            + +G +    +      R E A      M+  +   W EL+++V+  G+ ++  +AIAP
Sbjct: 515 EYAKGTYFNKYVTNDYSPRTEKAKLLFEGMHIPTPADWAELQQKVQKHGVYHAYRLAIAP 574

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ I   + S+ P  +++  ++  +        +L                      
Sbjct: 575 TQSISYIQNATSSVMPIVEHIETRTYANSTTYYPMPYL---------------------- 612

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
                      +    + +A+ ID   +I+  +  Q+ IDQ  S  L+++   S ++L  
Sbjct: 613 ---------SQENYFYYKSAYVIDQFKVIDLIAEIQEHIDQGISTVLHVNSNISTRELAR 663

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
            Y  A   GLK+ YY R++  T  E
Sbjct: 664 YYIYAAKKGLKSLYYTRTKHLTVEE 688


>gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile 630]
 gi|115252053|emb|CAJ69889.1| Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase large subunit) [Clostridium difficile]
          Length = 699

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/705 (23%), Positives = 304/705 (43%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG  ++ +  +    D++    D+  + 
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEV-INQYSIDVIKNIYDMIDKH 82

Query: 290 DFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ Y+ +   Y  Y L  N     +E      + VA+ L     +    A+   + +
Sbjct: 83  KFEFQSYMSVNKFYQNYALKSNDGKEILETYNDKVLIVALTLGNGNKD---LALNLADKI 139

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G +   ++ SCFL +V D   GI  A+  +  L+K  GG+  + +
Sbjct: 140 VKQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D 
Sbjct: 200 KLRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  E Y
Sbjct: 260 KKINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEMD-EWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC
Sbjct: 319 DKLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  E               CNLGS+N+      N  D   + ST+ TA+R L 
Sbjct: 378 CEIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALS 432

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +     SN    +IGLG M     L   +I Y S +A++ ++     + +
Sbjct: 433 FVADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRY 492

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL-AMNRTS 742
           ++I AS+++A E    +  F  S + +G         +    +    +VR     +   +
Sbjct: 493 YSIKASMKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W +L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V+    GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + +D    + +A+ +D   +I+  + 
Sbjct: 611 YP-----------------------------MPFLTNDNMLYYQSAYRMDMRKVIDLVAT 641

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  +DQ  S  L+  DE + + +   Y  A+  GLK+ YY R++
Sbjct: 642 VQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|304381651|ref|ZP_07364300.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304339754|gb|EFM05699.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 701

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/674 (25%), Positives = 287/674 (42%), Gaps = 72/674 (10%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
           + +   + DL+ +     Y +   F    Y+     +  Y L  N     +E        
Sbjct: 69  VLDIYSEADLIEIT---DYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAI 125

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           VA+ LA      + +A +F + +    +  +TPT  N+G  R  +L SCFL  V D L  
Sbjct: 126 VALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNS 182

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I         L+K  GG+  + + +R  G  I G  G ++GV+P  K         +Q G
Sbjct: 183 INFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLG 242

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F
Sbjct: 243 QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMF 302

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V + + +   + ++  E Y            +K +A  +   +     ++G+P++ 
Sbjct: 303 APHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLM 360

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV-----CNLGSINLLAH 610
           FKD  N   P  ++G +  SNLCTEI         N    E  +     CNLGS+N++  
Sbjct: 361 FKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNV 420

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +      K   ++ + +  L  V D+ N       +K+N    ++GLG+M     L  
Sbjct: 421 MESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAK 475

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-- 726
             I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F+ S +  G +       
Sbjct: 476 NKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQ 535

Query: 727 ---GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                  +VR+    M   +   W +L++ V+  G+ ++  +AIAPT +I+ +   + S+
Sbjct: 536 EFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSV 595

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  + +      FL                                    
Sbjct: 596 MPIVDQIERRTYGNAETFYPMPFL-------------------------------SPQTM 624

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ Y
Sbjct: 625 WYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLY 684

Query: 902 YLRSRSATSVEKST 915
           Y R++   SVE+ T
Sbjct: 685 YTRNK-LLSVEECT 697


>gi|255656921|ref|ZP_05402330.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-23m63]
 gi|296452238|ref|ZP_06893945.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296877590|ref|ZP_06901621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
 gi|296258925|gb|EFH05813.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296431441|gb|EFH17257.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
          Length = 699

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/705 (23%), Positives = 302/705 (42%), Gaps = 71/705 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE L++  ++  +    +   L  E     I+EG  ++ +  +    D +    ++  ++
Sbjct: 25  REALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEV-INQYSMDFIKNIYEIIDKQ 82

Query: 290 DFAFE-YLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F+ Y+     Y  Y L  N     +E      + VA+ L     +     +   + +
Sbjct: 83  KFEFQSYMSANKFYQNYALKSNDGKKILETYNDKVLIVALTLGNGNKD---LVLNLADKI 139

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N+G +   ++ SCFL +V D   GI  A+  +  L+K  GG+  + +
Sbjct: 140 VKQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLS 199

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D 
Sbjct: 200 KLRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDT 259

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E+  + Y
Sbjct: 260 KKINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIEM-NKWY 318

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ++  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + +G++  SNLC
Sbjct: 319 DKLVNDNDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDIGIIKMSNLC 377

Query: 586 TEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            EI    +  E               CNLGS+N+      N  D   + ST+ TA+R L 
Sbjct: 378 CEIFQYQTHSEIEGYGGKNEWGQDISCNLGSLNIA-----NVMDNKTIESTVETAIRALS 432

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D      +     SN    +IGLG M     L   +I Y S +A++ ++     + +
Sbjct: 433 FVADSTDIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRY 492

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQG--------VFPIDSIGLLAEVRDEL-AMNRTS 742
           ++I AS+++A E    +  F  S + +G         +    +    +V+     +   +
Sbjct: 493 YSIKASMKIAIEKNQTFEGFDKSEYAKGRNSKVLSKYYEQSYLPKSEKVKALFEGIYIPT 552

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W +L   VK  G+ N+  MAIAPT +I+ +   + SI P  + + V+    GD T +
Sbjct: 553 KEDWTKLLDEVKEKGIYNAYLMAIAPTQSISYVQNSTSSIMPITEPVEVR--TYGDSTTI 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                          +  + +D    + +A+ +D   +I+  + 
Sbjct: 611 YP-----------------------------MPFLTNDNILYYQSAYRMDMRKVIDLVAT 641

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  +DQ  S  L+  DE + + +   Y  A+  GLK+ YY R++
Sbjct: 642 VQNHVDQGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|187931832|ref|YP_001891817.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712741|gb|ACD31038.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 590

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQTVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|73663295|ref|YP_302076.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495810|dbj|BAE19131.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 701

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/720 (23%), Positives = 293/720 (40%), Gaps = 81/720 (11%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
                LE+++ + +     + ++  +      Y + F +Y E  ++    +   + F+  
Sbjct: 35  ALEVYLEEIQDKTIY-FDTEIERLRYLVDNDFYFDLFAKYSEADLQEITDYAKSIPFEFA 93

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEK 337
                          Y+     +  Y L  NG    +E  +     VA+ LA        
Sbjct: 94  --------------SYMSASKFFKDYALKTNGKSQYLEDYKQHVAIVALYLANGHK---A 136

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +F + +    +  +TPT  N+G  R  +L SCFL    D L  I         L+K 
Sbjct: 137 TAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEADDSLNSINFIDSTAKQLSKI 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H
Sbjct: 197 GGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  +   + L   
Sbjct: 257 YDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFHMFAPHTIYKEYGLTLD 316

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +     E Y+       I   +K  A  +   +     ++G+P++ FKD  N       +
Sbjct: 317 DI-NLDEYYDELVANPNIDKKKK-DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSDI 374

Query: 577 GVVHSSNLCTEITL-------NSSSEETAV-----CNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLCTEI         N    E  +     CNLGS+N++    +      K   +
Sbjct: 375 GQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESG-----KFKDS 429

Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + T +  L  V D          +K+N    ++GLG+M     L    I Y S EA + A
Sbjct: 430 VHTGMDALTVVSDEADIQNAPGVRKANRELHSVGLGVMNLHGYLAKNKIGYESEEAKDFA 489

Query: 684 DESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------ 736
           +     +++++I  S+E+A+E +  Y  F+ S +  G +         E + E       
Sbjct: 490 NIFFMMLNYYSIERSMEIAKERQEVYKDFEQSDYANGKYFEFYTSQTFEPKYEKVRKLFD 549

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +   W  L+++V+T G+ ++  +AIAPT +I+ +   + S+ P    +  ++  +
Sbjct: 550 GLEIPTPEDWKALQEQVETNGLFHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGN 609

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            +      FL  E                                   + +AF  D M L
Sbjct: 610 AETFYPMPFLSPE-------------------------------TMWYYKSAFNTDQMKL 638

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I+  S  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 639 IDLISTIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK-LLSVEECT 697


>gi|56707667|ref|YP_169563.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670138|ref|YP_666695.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456734|ref|ZP_03665207.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370175|ref|ZP_04986181.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874480|ref|ZP_05247190.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604159|emb|CAG45167.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320471|emb|CAL08550.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568419|gb|EDN34073.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840479|gb|EET18915.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158829|gb|ADA78220.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 590

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  HRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|241668403|ref|ZP_04755981.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876936|ref|ZP_05249646.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842957|gb|EET21371.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 590

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 189/689 (27%), Positives = 290/689 (42%), Gaps = 115/689 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  D+   +D        Q+L + Y L         PQ  F R ++  +  +    
Sbjct: 3   NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGDI--- 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  S   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR-- 570
                                  V   I A  LW  +L   + TG P++ F D  N    
Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261

Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
             Q+ +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +
Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L +E+G      G+                               
Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK
Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + Q QSLN++     S   +  ++  AW  G K  YYLR+ ++   E  + K       
Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK------- 566

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + N       +  S   ++EC  C
Sbjct: 567 ----VEKNRLVEFSELKQS---ESECVAC 588


>gi|167627844|ref|YP_001678344.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597845|gb|ABZ87843.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 590

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 189/689 (27%), Positives = 290/689 (42%), Gaps = 115/689 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  D+   +D        Q+L + Y L         PQ  F R ++  +  +    
Sbjct: 3   NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGDI--- 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  S   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR-- 570
                                  V   I A  LW  +L   + TG P++ F D  N    
Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261

Query: 571 SPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
             Q+ +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +
Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------EKYDEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L +E+G      G+                               
Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK
Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + Q QSLN++     S   +  ++  AW  G K  YYLR+ ++   E  + K       
Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKK------- 566

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                + N       +  S   ++EC  C
Sbjct: 567 ----VEKNRLVEFSELKQS---ESECIAC 588


>gi|228904847|ref|ZP_04068901.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228854861|gb|EEM99465.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 635

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/667 (24%), Positives = 287/667 (43%), Gaps = 67/667 (10%)

Query: 272 SMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGL 328
              + ++  +     Y   F F+ Y+     Y  Y L  +  +I  E  +     VA+ L
Sbjct: 4   EYTEEEVQRIYEA-AYTHKFEFQSYMAATKFYKDYSLRSDDKKIYLEDYEDRAAIVALYL 62

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGAL 387
           A   T+K   A+ + N +   ++  +TPT  NSG     +L SCFL  + D L  I   L
Sbjct: 63  ASGNTKK---ALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNL 119

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
                L+K  GG+  + + +RG    I G    + GV+P +K+  D+   +NQ G+R GA
Sbjct: 120 SVAKQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGA 179

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
             AYL  +H D+ EFLD +K   D++ R   ++     P  F +   QN    LF+P  V
Sbjct: 180 GAAYLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATV 239

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDP 566
              + ++  + +   E Y+       ++  +  ++A  +  K+ T+  E+G+P+   K  
Sbjct: 240 YKAYGVHLDDMD-LDEKYDELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTN 298

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANN 614
            N + P + +G V  SNLCTEI     +                 C LGS+N++    N 
Sbjct: 299 ANEQHPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISCVLGSLNIVNVMENK 358

Query: 615 QFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                 +   + T + +L +V D +        KK+N T  ++GLG M     L    IP
Sbjct: 359 -----DVKEAVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLGTMNLHGFLAKNFIP 413

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IG 727
           Y S +A + A      +++H+I  S E+A+ERG ++  F+ S + +G +         + 
Sbjct: 414 YESEDAKDFARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLP 473

Query: 728 LLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
              +V+     +   +   W+ L K+V+  G+ +S  +AIAP  +   +   + S+ P  
Sbjct: 474 QSEKVKKLFEGIQIPTTADWERLMKQVQRDGLYHSYRLAIAPNQSSGYVQNATPSVMPIV 533

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             +  +S           +    L ++  +                            + 
Sbjct: 534 DKVETRSTDKATTYYPMPY----LSKQTFFS---------------------------YK 562

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +A+E+D M +I+  +  Q  +DQ  S  L+  +  S + L   Y  A   GLK+ YY R+
Sbjct: 563 SAYEMDQMKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRT 622

Query: 906 RSATSVE 912
            ++T  E
Sbjct: 623 SNSTIEE 629


>gi|10957414|ref|NP_051640.1| ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
 gi|6460843|gb|AAF12547.1|AE001826_16 ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
          Length = 702

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/701 (25%), Positives = 296/701 (42%), Gaps = 67/701 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +        P     H++     E      E G+    L E     D V    +  Y   
Sbjct: 34  QAYFQEKVNPNTVFFHDL----REKIRYLTEHGLWDARLFERYSSED-VRQVFEKAYGYK 88

Query: 291 FAFE-YLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F+ ++G    Y  Y          +E  +    R+++  AL  +E+   A+E  + L 
Sbjct: 89  FRFKAFMGAYKFYSEYAGMTPDRSRWLERYED---RLSIT-ALARSERVDEALELVHHLV 144

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +  F  +TPTL NSG  +  +L SCFL     D+L  I   L   A L+K  GG+G + +
Sbjct: 145 NQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLDSITKTLSFVAELSKGGGGIGVEAS 204

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  + G    ++GV+   K+ ++     +Q G+R GA   YL   H D  + L+ 
Sbjct: 205 NLRARGESLRGIQNVTKGVLGVAKMLDNMLRYADQAGQRPGAGAVYLSVMHADFSDLLNA 264

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYEN 524
           +K   D+  R   ++    IPD+FM++V        F P          G+EF  I +  
Sbjct: 265 KKIATDEDARLKTLSIGATIPDIFMEKVRCGEDIYQFYPHSF---FQETGREFTSIDWTK 321

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             +          +++SA  L   +     E+G+P++ F+   N  +P  +VG +  SNL
Sbjct: 322 EYQALADNPNIRKKRVSARRLLEDIAVTQGESGYPYLLFEGNANRANPIPNVGTIKMSNL 381

Query: 585 CTEITLNSSSEE---------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           C+EI   ++              +    S NL +           L   +  A+R+LDNV
Sbjct: 382 CSEILQPTTPSYFHPYGQEHRDRIGLDVSCNLASLVIEQTMHGGDLGRVVGAAIRMLDNV 441

Query: 636 I-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
               + H +   K++N   R+IGLG MG  S L    + Y SPEA+E  D     + +HA
Sbjct: 442 ARSTSVHEVPAVKRANDEMRSIGLGAMGLHSFLAGKELIYGSPEALEFVDVFFAAVHYHA 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL-AEVRDELA-----MNRTSRLPWD 747
             AS+E+A++    +S F+GS +  G      +    A  R E+A         +R  W+
Sbjct: 502 RKASMEIARDTGFVFSGFEGSRYQSGEHFAQYLERDFAPRRPEVAALFEGHTLPTRADWE 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +KT G+ +S  MAIAPT +I+ +   S SI P  + +  +++           L 
Sbjct: 562 QLVEDIKTHGLAHSFVMAIAPTGSISYVSHASASIMPITEKVETRTSNKARTIYPMPHL- 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                          +D +  +  A+++D   ++++ +  QK +
Sbjct: 621 ------------------------------SEDTEWYYEEAYDMDQRRVLDTVAAAQKHV 650

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           DQ  S  L+L    + + L   Y  A+ +G+KT YY R R 
Sbjct: 651 DQGISCTLFLPASATTRTLQSYYLYAYRLGIKTLYYTRLRK 691


>gi|311993500|ref|YP_004010365.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
 gi|295917457|gb|ADG60128.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
          Length = 803

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/848 (20%), Positives = 306/848 (36%), Gaps = 121/848 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G    F   ++  ++E +C     ++   +         D ++ ++++ A++ 
Sbjct: 1   MKVIKSSGIAQDFIPAKIIQVLEWSCEKT-TINPYELFELCQPFFKDEMTTTEIQRAIVK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S   I+ +  +Y  V +      LR+EV    +  P    H   +           + G
Sbjct: 60  VSADSIQIDQTDYQYVASNLAQFGLRKEVYGQ-FDPPHLYDHVVAK----------TDVG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +    + E     +   L   + ++RDF F Y G   + D+Y +    +G   E PQ  +
Sbjct: 109 IYDPEIIERYTREEFDALNAMIDHDRDFNFTYAGTMQMKDKYLVKDRSSGEIFETPQFLY 168

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M + M L   E   ++     +FY+  S F     TP L    T   Q SSC L    DD
Sbjct: 169 MLIGMCLHQNENPAKRLQYIKDFYDAASQFKISLPTPILAGVRTPTRQFSSCVLIETGDD 228

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G     +R  G+ I     K  GV PF K+ N    + +
Sbjct: 229 LESITETTSAIVKYVSKRAGIGISGGAIRAEGSKIGPGEVKHTGVTPFWKLKNAAVHSCS 288

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L ++R   N   
Sbjct: 289 QGGIRKGSATCYWPIWHLECENLMVLKNNKGIEENRIRHMDYGIQLNNLMIERYLTNDYV 348

Query: 500 TLFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR-KMLTMLFETG 557
           TLFS +     L + Y  + E+    YE       I+  ++I A  L++   +T    T 
Sbjct: 349 TLFSTEINGGKLLESYYADEELFRTMYEELERNPAIRK-KRIKATELFQGLFMTERANTA 407

Query: 558 HPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSINLLAHF-- 611
             +    D  N      + +  V  SNLC EI L++    + +T    + S ++++    
Sbjct: 408 RLYPQHVDNTNNFGPWIRSIAPVKMSNLCAEIALHTVALGTYQTQRLTVASGDIVSFIEK 467

Query: 612 ------------------------ANNQFDYDKLASTIRTAVRVLDNVIDINC------- 640
                                      +  ++        A+  L   +  N        
Sbjct: 468 YGSKRVVLPSVEDGFTRVKKGYRAKEGEIAFNVQEDLGEIALCTLSAWVLDNFDWRDQEE 527

Query: 641 --------------------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
                               +  + A K    +R++G+G+  + + L      Y      
Sbjct: 528 VNRIGMVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAAWLASNASSYEDDH-- 584

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E   E  E + +  I+AS++LA+E+G       + + +G  PID      +  DELA   
Sbjct: 585 ETTHELFERLQYALINASIDLAEEKGPSPQLHKTKYGRGELPIDWY---CKNVDELAPPV 641

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
              L W+  + R+K IGMRN    A  P  + + +   +  I+   + +  K +  G F 
Sbjct: 642 YV-LDWEATRTRLKIIGMRNVTLSAQMPCESSSQVSNSTNGIERPLKPVSYKQSKDGSFN 700

Query: 801 VVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            V   + VN++     W                              +A +      +  
Sbjct: 701 QVVPNYEVNQMFYEFAW-----------------------------ESAAKFGNKGYLAK 731

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +  QKW DQA SLN Y    S +        +       +  G K  YY  +   +  +
Sbjct: 732 MAVIQKWTDQAISLNTYYVPASYENGKVPMSAMMDDMLYCFYYGNKNMYYHNTDDGSGSD 791

Query: 913 KSTLKGVD 920
            S     +
Sbjct: 792 DSNDADCE 799


>gi|290889637|ref|ZP_06552727.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
 gi|290480835|gb|EFD89469.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
          Length = 723

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/726 (20%), Positives = 295/726 (40%), Gaps = 80/726 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L   +        V+++L+ +    F +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLRFSSLKERFDWLVKNNFVESQLVKKYDFTF-IEKLYDFLD-AV 91

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ ++     Y +Y +  +       +++  R+ +         +K A+   + +  
Sbjct: 92  HFQFQSFMAAYKFYTQYAIKTDDGNY-YVESYEDRITVNALYYADGDQKLAMRIADEMIH 150

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K
Sbjct: 211 REAGASVMGLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +     LFSP +V  ++ +     ++  E Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGVPFNYVDLTKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E    + + A  L  ++  +  E+G+P++   D  N  +     G V +SNLC+E
Sbjct: 330 MVANDE-IKKQWVDARNLEMEISKLQQESGYPFVINLDIVNRAN--PVYGKVVTSNLCSE 386

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN+     +N         ++ T  R L  V
Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINI-----DNMMHTADFGKSVETMTRALTFV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +    +   +  N    AIGLG MG  + L    I Y    A++  +      +++ 
Sbjct: 442 SESSDISVVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D      +V+      +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +               
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEAR--------------- 606

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E M   + Y    + N      +    + +A+++D   +I++ +  Q+ +
Sbjct: 607 ---------AEGMTGRVFYPANGLSN------ETLPYYVSAYDLDQRKVIDTYAAAQEHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ +  + 
Sbjct: 652 DQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDNT 711

Query: 912 EKSTLK 917
           E+   +
Sbjct: 712 EQGVNE 717


>gi|4490609|emb|CAB38642.1| ribonucelotide reductase major subunit [Staphylococcus aureus]
          Length = 718

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/691 (25%), Positives = 291/691 (42%), Gaps = 72/691 (10%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSF 711
             ++GLG+M     L    I Y S EA + A+     ++F++I  S+E+A+ERG  Y  F
Sbjct: 476 LHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDF 535

Query: 712 KGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G +              +VR+    M   +   W +L++ V+  G+ ++  +A
Sbjct: 536 EKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLA 595

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPT +I+ +   + S+ P    +  ++  + +      FL                   
Sbjct: 596 IAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL------------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
               S   +            +AF  D M LI+  +  Q  IDQ  S  LY++ E S ++
Sbjct: 637 ----SPQTMWYC--------KSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRE 684

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 685 LARLYVYAHYKGLKSLYYTRNK-LLSVEECT 714


>gi|116490255|ref|YP_809799.1| ribonucleotide-diphosphate reductase subunit alpha [Oenococcus oeni
           PSU-1]
 gi|116090980|gb|ABJ56134.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Oenococcus oeni PSU-1]
          Length = 723

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/726 (20%), Positives = 294/726 (40%), Gaps = 80/726 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L   +        V+++L+ +    F +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLRFSSLKERFDWLVKNNFVESQLVKKYDFTF-IEKLYDFLD-AV 91

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ ++     Y +Y +  +       +++  R+ +         +K A+   + +  
Sbjct: 92  HFQFQSFMAAYKFYTQYAIKTDDGNY-YVESYEDRITVNALYYADGDQKLAMRIADEMIH 150

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA +      + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K
Sbjct: 211 REAGASVMRLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +     LFSP +V  ++ +     ++  E Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGVPFNYVDLTKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E    + + A  L  ++  +  E+G+P++   D  N  +     G V +SNLC+E
Sbjct: 330 MVANDE-IKKQWVDARNLEMEISKLQQESGYPFVINLDIVNRAN--PVYGKVVTSNLCSE 386

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN+     +N         ++ T  R L  V
Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINI-----DNMMHTADFGKSVETMTRALTFV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +    +   +  N    AIGLG MG  + L    I Y    A++  +      +++ 
Sbjct: 442 SESSDISVVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D      +V+      +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +               
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEAR--------------- 606

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E M   + Y    + N      +    + +A+++D   +I++ +  Q+ +
Sbjct: 607 ---------AEGMTGRVFYPANGLSN------ETLPYYVSAYDLDQRKVIDTYAAAQEHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ +  + 
Sbjct: 652 DQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDNT 711

Query: 912 EKSTLK 917
           E+   +
Sbjct: 712 EQGVNE 717


>gi|294338964|emb|CAZ87308.1| Putative Ribonucleoside-diphosphate reductase large chain
           [Thiomonas sp. 3As]
          Length = 811

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 256/634 (40%), Gaps = 78/634 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           + + L +L ++Y      +          RVA  LA++E +  +    F   L+   F+ 
Sbjct: 4   QDISLDVLAEKYAKGDEHTIA----DIHARVARALAVEEADPARSEALFRQALADG-FVP 58

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGI-------FGALQENAMLAKYSGGLGNDWT 405
           +   +  +GT     L +CF+  V D +          + AL + A   +  GG+G D++
Sbjct: 59  AGRIMSAAGTDIQATLINCFVQPVGDSVSDDKEGKPSIYKALAQAAETMRRGGGVGYDFS 118

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +GAH+ GT+ ++ G + F++V + +   V   G R+GA    L   H D+E F+  
Sbjct: 119 RIRPVGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRIDHPDIEAFIHA 178

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+    + N +  +   FM+ +  +A   L       D     G       E  
Sbjct: 179 K-----DQGAFKNFNLSVGVSAAFMQAIENDAQIDLVHKARPGDDQLAEGAHQRADGE-- 231

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V+R + A ALW +++   ++   P I F D  N  +   +     ++N C
Sbjct: 232 ---------WVYRSVRARALWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPC 282

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC 640
            E  L     +   C LGSINL     +      +FD +   +  R AVR+LDNV+D+  
Sbjct: 283 AEEFLP----DYGCCCLGSINLTRFVRDPFTPKARFDAEGFQAVTRVAVRMLDNVLDVTY 338

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +        R IGLG +G   A  +L + Y S +A   A +    +   A +ASV+
Sbjct: 339 WPLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADLARTLRDAAYAASVD 398

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GA+  F  + +    F                     RLP + L+  +   G+RN
Sbjct: 399 LAKEKGAFPLFDATKYLDSGF-------------------AKRLP-EALRADIAAHGIRN 438

Query: 761 SNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           S+ +A+APT TI+       S  I+P++  +Y +     D T    + V +   R     
Sbjct: 439 SHLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKRMADNTT-REYEVADHAWRLY--R 495

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           +M  D+                L     TA E+     ++     Q +ID + S  + + 
Sbjct: 496 SMGRDMSA--------------LPPAFVTALEMSATDHMKMLQVVQPFIDTSISKTVNVP 541

Query: 879 EPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
                     +Y QAW  GLK     R  +    
Sbjct: 542 ADYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575


>gi|82778047|ref|YP_404396.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|309786254|ref|ZP_07680882.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81242195|gb|ABB62905.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|308925999|gb|EFP71478.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 616

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/619 (26%), Positives = 269/619 (43%), Gaps = 48/619 (7%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       +
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-N 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFPNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 188 SKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLH 247

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V     +
Sbjct: 248 AHHPDILRFLDTKRENADEKIRIKILSLGVVIPDITFHLAKENAQMALFSPYDV---ERV 304

Query: 514 YGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F ++A   +  +    E    + ++A   +++++ + FE+G+P+I ++D  N  + 
Sbjct: 305 YGKPFADVAISQHYDELVADERIRKKYLNARDFFQRLVEIQFESGYPYIMYEDTVNRAN- 363

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D   
Sbjct: 364 -PIAGRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLNIA-----HTMDSPD 417

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA
Sbjct: 418 FARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEA 477

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLA 730
           ++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + 
Sbjct: 478 LDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVG 537

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+     +   +   W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 538 ELFTRSGITLPTHEMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVE 597

Query: 791 VKS-NMSGDFTVVNSFLVN 808
           ++    +G       F+ N
Sbjct: 598 IRKEGKTGRVYYPAPFMTN 616


>gi|332527721|ref|ZP_08403762.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
 gi|332112119|gb|EGJ12095.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
          Length = 827

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/659 (24%), Positives = 271/659 (41%), Gaps = 80/659 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTL 358
           L ++Y    +   I   Q    RVA  LA  E E  + A E  F   +    F+ +   +
Sbjct: 22  LLEKYA-KGDEQNIAQVQ---ARVARALAAIEAEDARSAREAEFLWAMQRG-FVPAGRIM 76

Query: 359 FNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +GT     L +CF+  V D +        GI+ A+ E A   +  GG+G D++ +R  
Sbjct: 77  SAAGTDIQATLINCFVQPVGDSITGYEGDKPGIYTAVTEAAETMRRGGGVGYDFSRIRPQ 136

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA +  T+ ++ G + F++V + +   V   G R+GA    L   H D+E F+  +    
Sbjct: 137 GALVTQTHSRASGPVSFMRVFDASCETVESAGARRGAQMGVLRCDHPDIEAFIHAK---- 192

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+    + N +  + D  ++ V  +A + L              +  E       RQ +
Sbjct: 193 -DKGELRNFNISVGVTDALVQAVIDDAEFELVHA----------ARPHEELVAAGARQRE 241

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
            G+  V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L
Sbjct: 242 DGKW-VYRSVKARDLWDQIMRSTYDHAEPGVLFIDQMNRENNLHYCETIEATNPCAEEPL 300

Query: 591 NSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                +   C LGS++L  H       +  FD++  A+ +R  VR+LDNV+D     +E+
Sbjct: 301 P----DYGCCCLGSVDLTRHVVGAFSDDAHFDFEGFAAVVRVGVRMLDNVLDATYWPLEQ 356

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R +GLG +G  S+L +L I Y S E   +A +  E +   +  ASV+LA ER
Sbjct: 357 QRAEAAAKRRVGLGFLGLGSSLVMLGIRYDSDEGRALAAKIAETMRDASYLASVDLAVER 416

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+   + + + +  F                     RLP + ++K ++  G+RNS+ +A
Sbjct: 417 GAFPKLEKTKYLKSGF-------------------AKRLP-ESIRKAIRKHGIRNSHLLA 456

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+       S  I+P +   Y +     D +    F V +   R          
Sbjct: 457 IAPTGTISLAFADNASNGIEPPFSWTYNRKKREADGSH-RIFEVADRAWRLF-------- 507

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-G 882
              H G  G++ ++P        TA E+     +      Q ++D + S  + +      
Sbjct: 508 --RHLG--GDVTKLPPQ----FVTALEMSANDHMRMLEAVQPFLDTSISKTVNVPADYPY 559

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           +    +Y  AW  GLK     R  S      S               D +  T  +G P
Sbjct: 560 EDFQNLYLDAWKAGLKGLATYRPNSVLGSVLSVGTPAAAPATPAAPRDEDPLTKHVGRP 618


>gi|134301989|ref|YP_001121958.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049766|gb|ABO46837.1| ribonucleoside-diphosphate reductase, alpha chain [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 285/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y   +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYAAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMAGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|254369309|ref|ZP_04985321.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122259|gb|EDO66399.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 190/686 (27%), Positives = 286/686 (41%), Gaps = 115/686 (16%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +      A
Sbjct: 6   YLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---MNLA 58

Query: 340 VEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
              Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   L+ 
Sbjct: 59  QRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRWLSV 118

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  W+ VR +         K+ G IPF+   +   VA  QG  RKG+  AY++  
Sbjct: 119 KGGGVGGHWSSVRAVSD-------KAPGPIPFMHTVDADMVAYRQGKTRKGSYAAYMDIS 171

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+         
Sbjct: 172 HPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD--------- 222

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQ 573
                               V   I A  +W  +L   + TG P++ F D  N      Q
Sbjct: 223 ------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANKALPKSQ 264

Query: 574 QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           + +G  +  SNLC EI L +  + TAVC L S+NL       ++D  K  S I+  +R L
Sbjct: 265 KDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNL------ERYDEWKDTSLIKDLIRFL 318

Query: 633 DNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           DNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E  +
Sbjct: 319 DNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEEIFK 378

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+  ++ L  E+G      G+                                  
Sbjct: 379 RIKEQALEETLILGAEKGEAPDMVGT---------------------------------- 404

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                   G RN++ +AIAP A  + I   S SI+P   N +      G     N +L  
Sbjct: 405 --------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKYLEQ 456

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL++     E + S++  + GS+  ++ +  +LK++  TA E+D  WL+     RQK++ 
Sbjct: 457 ELEKIGKNTEEVWSNIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQKYLC 516

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L    
Sbjct: 517 QGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRLVEFS 576

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
               +              + EC  C
Sbjct: 577 EIKQS--------------ENECIAC 588


>gi|307727744|ref|YP_003910957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
 gi|307588269|gb|ADN61666.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
          Length = 859

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/658 (24%), Positives = 264/658 (40%), Gaps = 80/658 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
               +L ++Y         +     F RVA G+A  E E  + +VE    + L       
Sbjct: 30  FSTDVLLEKYAKGDE----QSADDVFRRVAHGVAAAEPEALRESVEALFVDNLRHGALGA 85

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 86  GRIMSAAGSGIAATLINCFVQPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFS 145

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 146 AIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCDHPDLLEFIEA 205

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V +N  W L    E S      G          
Sbjct: 206 KHSKG----RWNNFNVSVGVTDQFMRAVEENELWQLVHRAEPSPALRAAG---------- 251

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           + +     + V+ +  A  +W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 252 DMRQRDDGMWVYSERPAREIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 311

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL                 FD+D LA   RT VR LDNV+
Sbjct: 312 GEQPLPA----YGCCNLGPLNLTRFVLEPFAQLKGRKPSFDWDGLAQRTRTQVRFLDNVL 367

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +    +   R IG+G  G    L +L + Y S E  + A      +   A  
Sbjct: 368 DVTLWPLPQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYR 427

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+ERGA+  F    + +                       SRLP ++LK  ++  
Sbjct: 428 ASVELAKERGAFPLFDAKRYLEPGTF------------------ASRLP-EDLKDAIRRD 468

Query: 757 GMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D +   +F V +   R 
Sbjct: 469 GIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYKRMKVMADGSR-ETFDVEDYAYR- 526

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L+ E             G++ R+PD       +A E+     ++  +  Q ++D + S  
Sbjct: 527 LYREL-----------GGDVSRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKT 571

Query: 875 LYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + +      +  + +Y  AW  GLK     R         S          A    DP
Sbjct: 572 VNVPADYPFEAFESLYFDAWKSGLKGLATYRPNETLGAVLSVSPAQADDTLAESDLDP 629


>gi|125541523|gb|EAY87918.1| hypothetical protein OsI_09340 [Oryza sativa Indica Group]
          Length = 676

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/606 (28%), Positives = 286/606 (47%), Gaps = 62/606 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   ++    GL  +     +V  +    +Y G++ S L    
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  +        K+    ++ +Y  Y  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAISNLHKTTM--------KSFSETIKVMYMHYDER---S 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ A L+ + + +    +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+   + E    A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D
Sbjct: 170 MLMRVSIGIHKDDIE---SAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDD 226

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N 
Sbjct: 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNE 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EF+  Y+ YER+      K  + +SA ALW  +L    ETG
Sbjct: 347 NWSLFCPNEAPGLADCWGDEFQNLYKKYEREG-----KAKKVVSAQALWFDILKAQIETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS-----INLLAHFA 612
            P++ +K     +   + +   H+     EI       ET   +  S      ++     
Sbjct: 402 TPYMLYKAQQLNKDIFETIYY-HALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP 460

Query: 613 NNQFDYDKLASTI-RTAVR----------VLDNVIDINCHTIEKAKKSNHTHRAIG---- 657
           ++++++  L   I +  VR             + I  N    E    + ++ R +     
Sbjct: 461 SDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 520

Query: 658 ---------LGLMGFQSALHLLHIPYASPEAVEIAD------ESMEFISFHAISASVELA 702
                    L  MG  S +    I Y      +I++           +        V++A
Sbjct: 521 VVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMA 580

Query: 703 QERGAY 708
            +RG Y
Sbjct: 581 IDRGCY 586



 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 151/284 (53%), Gaps = 11/284 (3%)

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             PY   +A ++  +  E I +HA+ AS E+A + G Y ++ GS   +G+   D   ++ 
Sbjct: 401 GTPYMLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP 460

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     + R  W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y
Sbjct: 461 ----------SDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 510

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +E
Sbjct: 511 SRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWE 570

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A 
Sbjct: 571 IKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAA 630

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K T+     K       + +  +    +  S  +  EC  C
Sbjct: 631 DAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 674


>gi|317495972|ref|ZP_07954334.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
 gi|316913876|gb|EFV35360.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
          Length = 696

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/714 (25%), Positives = 298/714 (41%), Gaps = 67/714 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF--DLVYL 281
            KL +  E +    ++    T      +  +     +EE     +  + + D   + + L
Sbjct: 22  FKLEKDQEAIAEFLREVDYKTVKFSSEM--KRLRYLVEENFYYNIFDKYIEDEIVECLEL 79

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP---QAFFMRVAMGLALKETEKEKR 338
           A + K+E      Y+     Y  Y L  N  +  +    Q  F+ VAM L    T     
Sbjct: 80  AKNFKFEFK---SYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLGDGNT---AL 132

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    +       +TPT  NSG  R  +L SCFL  V D L  I         L+K  
Sbjct: 133 AKELMISMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIG 192

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  + + +R  G  I G  G ++GVIP  K         +Q G+R GA   YL  +H 
Sbjct: 193 GGVAINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHY 252

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DV EFLD +K   D+  R   ++T   +P LF     +N  + +F P  + + + L   +
Sbjct: 253 DVLEFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKEFYMFGPHSIYEEYGLVLDD 312

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +IA E Y+      E  + RK  A  +   +     ++G+P++ FKD  N     + +G
Sbjct: 313 IDIA-EYYDEFVAN-ENIIKRKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIG 370

Query: 578 VVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            V  SNLCTEI        +    E   +    S NL +    N  +  KL  +I + + 
Sbjct: 371 QVKMSNLCTEIFQLQETSVIKDYGESDVIKRDISCNLASLNIVNVMESKKLKESIYSGMD 430

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D           K+N    ++GLG M     L    I Y S EA + A+     
Sbjct: 431 ALTFVSDSTKIKNAPGVVKANEEFHSVGLGAMNLNGYLAKNLIAYDSEEAKDFANVFFMM 490

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTS 742
           ++++ I  S+++A+ER   +  F+ S +  G +       D +    +V++    +   +
Sbjct: 491 MNYYTIERSMQIAKERKETFKDFEKSDYYNGAYFTKYITNDYLPKSDKVKELFEGIYIPT 550

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +    
Sbjct: 551 KEDWHSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYP 610

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             +L  +                                +  + +AF +D M LI+  + 
Sbjct: 611 MPYLSPK-------------------------------TQWYYKSAFTMDQMKLIDLMAV 639

Query: 863 RQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Q+ IDQ  S+ LY++   + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 640 IQEHIDQGISVILYVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|241888655|ref|ZP_04775962.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864678|gb|EER69053.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
          Length = 696

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/711 (24%), Positives = 292/711 (41%), Gaps = 61/711 (8%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
            KL ++V        +            +     +EE     +  + + D  L  L  +L
Sbjct: 22  FKLEKDVEAIEEFLREVDFRTVKFNSEMKRLRYLVEENFYYNIFDKYIEDEILECL--EL 79

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMP---QAFFMRVAMGLALKETEKEKRAVE 341
                F F  Y+     Y  Y L  N  +  +    Q  F+ VAM LA  +      A E
Sbjct: 80  AANFKFEFKSYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLADGDV---ALAKE 135

Query: 342 FYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               +       +TPT  NSG  R  +L SCFL  V D L  I         L+K  GG+
Sbjct: 136 LMIAMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G  G ++GVIP  K         +Q G+R GA   YL  +H DV 
Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D+  R   ++T   +P LF     +N  + +F P  + + + L   + +I
Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           A   Y  +    E  + RK  A  +   +     ++G+P++ FKD  N     + +G V 
Sbjct: 316 A--KYYDRFVANENIMKRKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVK 373

Query: 581 SSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLCTEI        +    E+  +    S NL +    N  +  K+  +I + +  L 
Sbjct: 374 MSNLCTEIFQLQETSVIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +           K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQ-ERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLP 745
           + +  S+++A+     +  F+ S +  G +       D + +  +V+     +   ++  
Sbjct: 494 YTLERSMQIAKDRNETFKDFEKSDYYNGSYFTKYIENDYLPVTEKVKALFEGIYIPTKED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +      +
Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  +                                +  + +AF +D M LI+  S  Q+
Sbjct: 614 LSPK-------------------------------TQWFYKSAFTMDQMKLIDLMSVIQE 642

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +DQ  S+ L+++   + ++L   Y  A   GLK+ YY R++   SVE+ T
Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|94311068|ref|YP_584278.1| ribonucleotide reductase large subunit [Cupriavidus metallidurans
           CH34]
 gi|93354920|gb|ABF09009.1| ribonucleotide reductase, coenzyme B12-dependent [Cupriavidus
           metallidurans CH34]
          Length = 832

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/640 (24%), Positives = 263/640 (41%), Gaps = 80/640 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHF 351
           + + +++L ++Y         +       RVA  LA  E   ++E  A  F   L    F
Sbjct: 15  QDISIEVLQEKYAK----GEEQTIDDVRRRVARALAEVEPADKREAWASRFLWALEGG-F 69

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGND 403
           + +      +GT     L +CF+  V D +         I+ A+ + A   +  GG+G D
Sbjct: 70  VPAGRINSAAGTGIQATLINCFVQPVGDSVSQVRGGKPSIYTAVAQAAETMRRGGGVGYD 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+
Sbjct: 130 FSSIRPGGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     DR    + N +  + D FM+ V  +    L        +H+       IA  
Sbjct: 190 HAK-----DRGDLTNFNISIGVTDEFMQAVAADGEIEL--------IHEAEPGADGIAAG 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y R        V+R++ A  LW +++   ++   P I F    N  +   +   + ++N
Sbjct: 237 AYRRDDG---QWVYRRVPARRLWDQVMQATYDHAEPGILFLSRINADNNLYYCETIEATN 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L S       C LGSINL             FD++  A  +R + R+LDNV+DI
Sbjct: 294 PCAEQPLPS----YGCCCLGSINLTRFVRRPFTDQASFDFEAFAEVVRVSTRMLDNVLDI 349

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R IGLG +G  SAL +L   Y +  A  +A    E +  HA  AS
Sbjct: 350 TYWPLPEQQAEAQAKRRIGLGFLGLGSALVMLGHRYDTDAARALAGRISETMRDHAYLAS 409

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           VELA+E+G +  F    +  G F                    SRLP + ++  ++  G+
Sbjct: 410 VELAEEKGRFPLFDADAYLSGGF-------------------VSRLP-EPIRDAIREHGL 449

Query: 759 RNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++IAPT TI  A     S  I+P++   Y +              + +   R   
Sbjct: 450 RNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKR-----------MPDDSYRTFE 498

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                  L  H G  G++E++P+       TA ++  +  +      Q +ID + S  + 
Sbjct: 499 VADHAWRLYRHMG--GDVEQLPES----FVTALQMSAIDHMRMLEAVQPYIDTSISKTVN 552

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E    +    +Y +AW  GLK     R         S 
Sbjct: 553 VPEDYPYEAFRNLYLEAWKAGLKGLATYRPNQVLGAVLSV 592


>gi|186472165|ref|YP_001859507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
 gi|184194497|gb|ACC72461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
          Length = 851

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/699 (23%), Positives = 279/699 (39%), Gaps = 103/699 (14%)

Query: 274 MDFDLVYLAND-LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
            D DL  L +  +  ++        L +L ++Y               + RVA G+AL E
Sbjct: 8   TDNDLSQLNSTTIAPQQ------FSLDVLMEKYAKGDER----TADDVYRRVARGVALAE 57

Query: 333 TEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG----- 385
            E  + A+E  F   L +                   L +CF+  V D + G+       
Sbjct: 58  PEALRPAIEARFVENLQNGALGAGRIMSAAGAGIQATLINCFVQPVGDSIQGVDDQGLPG 117

Query: 386 ---ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
              AL + A   +  GG+G +++ +R  GA +  T   + G   ++ V + +   V   G
Sbjct: 118 IYVALLQAAETMRRGGGVGYNFSAIRPRGARVKTTGSSASGPCSYIDVFDASCRTVESAG 177

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA  A L+  H D+ EF+D + + G    R ++ N +  + D FM+ V  +A W L 
Sbjct: 178 SRRGAQMAVLDCTHPDLLEFIDAKHSKG----RWNNFNVSVAVTDEFMQAVENDAMWQLV 233

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              E +           +   N  RQ D G + V+ +  A  ++ +++   ++   P I 
Sbjct: 234 HRAEPTPA---------LRAANDVRQRDDG-MWVYSERRAKEIFDRIMRSTYDIAEPGIV 283

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------- 614
           F    N  +  + V  + ++N C E  L         CNLG +NL     +         
Sbjct: 284 FISRMNDDNNLRAVESIRATNPCGEQPLPP----YGCCNLGPLNLTRFVLDPFAQRHGGK 339

Query: 615 -QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+D LA   RT VR LD+V+D+    +E+    +   R IG+G  G    L ++ + 
Sbjct: 340 PSFDWDALAQRTRTQVRFLDDVLDVTLWPLEQQYDESRAKRRIGVGFTGLGDTLVMMGLR 399

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEV 732
           Y S E  + A    + +   A  ASVELA+ERGA+  F    +   G F           
Sbjct: 400 YNSQEGRDFAVRIAKLMRDEAYRASVELARERGAFPLFNAKQYLQDGTF----------- 448

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
                    SRLP D++K+ ++T G+RNS+ ++IAPT T++       S  I+P++   Y
Sbjct: 449 --------ASRLP-DDVKEAIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTY 499

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++ +  + +    F V +   R           +   G +G+       L     +A E
Sbjct: 500 TRTKVMANGSR-EQFAVEDHAYRLY---------RELGGDVGH-------LPDYFVSALE 542

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +     ++  +  Q +ID + S  + +         + +Y  AW  GLK     R     
Sbjct: 543 MSARDHLDMMAAVQPYIDTSISKTVNVPADYPFDAFENLYFDAWKGGLKGLATYRPN--- 599

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                        L AV    P ++  +    +    D 
Sbjct: 600 -----------ETLGAVLSVTPQAAPTADDALAEVDLDP 627


>gi|113868364|ref|YP_726853.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
 gi|113527140|emb|CAJ93485.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
          Length = 827

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 267/640 (41%), Gaps = 80/640 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--F 351
           + +  ++L ++Y      S  ++ Q    RVA  LA  E E ++ A      L +    F
Sbjct: 15  QEISTEVLIEKYAKGEERSIADVRQ----RVARALAQAEPEDQREA-WSARFLWAQENGF 69

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGND 403
           + +      +GT     L +CF+  V D +         I+ A+ + A   +  GG+G D
Sbjct: 70  VPAGRINSAAGTGIQATLINCFVQPVGDSVSEPREGRPSIYTAVAQAAETMRRGGGVGYD 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+
Sbjct: 130 FSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D+    + N +  + D FM+ V  +         EV  +H+       IA  
Sbjct: 190 HAK-----DKGDLSNFNISIGVTDAFMQAVQADG--------EVELVHEAEPGADMIAAG 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y R        V+R++ A  LW +++   ++   P I F    N  +   +   + ++N
Sbjct: 237 AYRRDDG---QWVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATN 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L S       C LGSINL            +FD+D  A  +R A R+LDNV+D+
Sbjct: 294 PCAEQPLPS----YGCCCLGSINLTRFVRQPFSPQAEFDFDAFAEVVRVATRMLDNVLDV 349

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +   H  R +GLG +G  SAL +L + Y +  A ++A    E +   A  AS
Sbjct: 350 TFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDDAYLAS 409

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA E+GA+  F  + + Q  F                     RLP + L+  +   G+
Sbjct: 410 TELAVEKGAFPLFDANAYLQSGF-------------------AGRLP-ERLRDAIARNGL 449

Query: 759 RNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++IAPT TI  A     S  I+P++   Y +     D +   SF V +   R   
Sbjct: 450 RNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMPDNSY-RSFEVADHAWRLYR 508

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           ++ ++PD       TA ++  +  +      Q +ID + S  + 
Sbjct: 509 HMG------------ADMAQLPDA----FVTALQMSALDHMRMLEAVQPYIDTSISKTVN 552

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E    +    +Y +AW  GLK     R  S      S 
Sbjct: 553 VPEDYPYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLSV 592


>gi|118586507|ref|ZP_01543951.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433071|gb|EAV39793.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 723

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/726 (20%), Positives = 294/726 (40%), Gaps = 80/726 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L   +        V+++L+ +    F +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLLFSSLKERFDWLVKNNFVESQLVKKYDFTF-IEKLYDFLD-AV 91

Query: 290 DFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F+ ++     Y +Y +  +       +++  R+ +         +K A+   + +  
Sbjct: 92  HFQFQSFMAAYKFYTQYAIKTDDGNY-YVESYEDRITVNALYYADGDQKLAMRIADEMIH 150

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TP+  N+G  R  +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +K
Sbjct: 211 REAGASVMGLANMAGGVVPIMKLMEDVFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +     LFSP +V  ++ +     ++  E Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGVPFNYVDLTKE-YDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E    + + A  L  ++  +  E+G+P++   D  N  +     G V +SNLC+E
Sbjct: 330 MVANDE-IKKQWVDARNLEMEISKLQQESGYPFVINLDIVNRAN--PVYGKVVTSNLCSE 386

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN+     +N         ++ T  R L  V
Sbjct: 387 ILQTQTISRINNEQEYTQLGADISCNLGSINI-----DNMMHTADFGKSVETMTRALTFV 441

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +    +   +  N    AIGLG MG  + L    I Y    +++  +      +++ 
Sbjct: 442 SESSDISVVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVSLDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +    +      + +         +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLAKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +               
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEAR--------------- 606

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E M   + Y    + N      +    + +A+++D   +I++ +  Q+ +
Sbjct: 607 ---------AEGMTGRVFYPANGLSN------ETLPYYVSAYDLDQRKVIDTYAAAQEHV 651

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           DQ  ++ L++                D+ + + L  +   A+  G+K+ YY+R+ +  + 
Sbjct: 652 DQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYNQGIKSIYYIRTFTDDNT 711

Query: 912 EKSTLK 917
           E+   +
Sbjct: 712 EQGVNE 717


>gi|322384851|ref|ZP_08058512.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150320|gb|EFX43822.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 891

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 265/647 (40%), Gaps = 61/647 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL---LSSFHFMCSTPTLFNSGTR 364
            +  +  + P   + R+A  +A  E    KR          L  +  +        +   
Sbjct: 100 KLTLNIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADAS 159

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 160 DELTLFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSS 219

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +
Sbjct: 220 GAVSWGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLS 275

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I + FMK V ++  W L  PD        Y ++++   + +  +A   E+K +R + A
Sbjct: 276 VCISNSFMKAVKEDLDWELVFPDTTD---PEYNEKWDGNLDAW--KALGKEVKHYRTVRA 330

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL
Sbjct: 331 RDVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPAW----GVCNL 386

Query: 603 GSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G 
Sbjct: 387 SAVNLSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGS 446

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  
Sbjct: 447 MGLAELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSG 506

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  + +    EV                  + +   GMRN   +  APT +   + G S 
Sbjct: 507 FMKNMVAEFPEV-----------------GESISQNGMRNVTVITQAPTGSTGTMVGTST 549

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G                              +    + +   ++
Sbjct: 550 GIEPYFAFEYFRQSRLGFDKQYVP--------------------IAQEWKDAHPD---EE 586

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L     TA ++     I + +  Q+W+D + S         + ++   +Y  A+ +G K 
Sbjct: 587 LPDYFITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKG 646

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               R  S      ST K  + K  AV   +  S   + G  +S  +
Sbjct: 647 VTIYRDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 693


>gi|221067377|ref|ZP_03543482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
 gi|220712400|gb|EED67768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
          Length = 797

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/661 (23%), Positives = 261/661 (39%), Gaps = 84/661 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS-SFHFMCSTPT 357
            +L ++Y    +G + E  Q  F RVA  LA  E  + +   E   LL+     + +   
Sbjct: 12  DVLAEKYL--ADGEQSE--QDLFARVAHALAAVEKPELQAHWEQKFLLNLQLGAIGAGRI 67

Query: 358 LFNSG-TRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
           +  +G      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDTQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSNASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + + FM+ V  +A W L      SD     G             
Sbjct: 188 KG----RWNNFNVSVGVSNAFMQAVRDDAEWELLHVASPSDAQIQAG------------- 230

Query: 529 ADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           A R E    V++   A  LW  ++   ++   P I F D  N  +   +   + ++N C 
Sbjct: 231 AHRREDGLWVYQSQPARTLWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCG 290

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         C+LG + L             FD +   + +   VR+LDNV+D    
Sbjct: 291 EQPLPP----YGCCDLGPVILTRFVREPFTPQAFFDLEAFRAAVAVQVRMLDNVLDATVW 346

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + ++     R IG+G  G   AL LL + YAS   ++ A+     +   A +ASVEL
Sbjct: 347 PLPEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAEAIARNMRDAAYAASVEL 406

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G++  F    + +  F                     RLP  EL+  ++  G+RNS
Sbjct: 407 AREKGSFPLFNAKQYLKSGF-------------------AKRLP-KELRADIRKHGLRNS 446

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + ++IAPT T++       S  I+P++   Y +   + D      + V +   R      
Sbjct: 447 HLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRRKRTADGGEQF-YTVQDHAYRL----- 500

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                  +    G+   +P+       +A E+     +      Q +ID + S  + +  
Sbjct: 501 -------YKAMHGDEAPLPEC----FVSALELSASEHVAMMRCVQPFIDTSISKTVNIPA 549

Query: 880 PS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
               +    +Y + W  GLK     R         ST      K +  P     ++ +S 
Sbjct: 550 DYPFEDFKHLYMECWEAGLKGCATYRPNDTLGAVLST--ESASKPSQTPTDKAQAAINSS 607

Query: 939 G 939
           G
Sbjct: 608 G 608


>gi|219853155|ref|YP_002467587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
 gi|219547414|gb|ACL17864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
          Length = 730

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/667 (25%), Positives = 279/667 (41%), Gaps = 95/667 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           IL  RY         +  +    RV    A      E  A  FY  ++S  F+ ++PTL 
Sbjct: 10  ILSARYLRAGE----KSFEDICHRV----AAALAADEAEAARFYEAMASLRFLPNSPTLM 61

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF   VPD + GIF A+++ A++ K  GG G +++ +R  G+ +  T G
Sbjct: 62  NAGTEIGQLSACFTLPVPDSIGGIFDAMKQGAIIHKTGGGTGYNFSNIRPEGSPVQSTEG 121

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G I F++V N     + QGG+R+GA    L   H D+  F++ +   G+      + 
Sbjct: 122 VASGPISFMRVFNAATEVIKQGGRRRGANMGILNVQHPDILAFINAKTREGE----IANF 177

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM  V++                    K F+                    
Sbjct: 178 NISVMVDDAFMHLVSE--------------------KTFDK--------VWLVHPHTGEA 209

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I+   +W  ++  +++ G P I F D  N  +P   +G++ ++N C E  L         
Sbjct: 210 ITVGQIWSGIVDGIWKNGEPGILFYDEINRHNPTPQLGMIDTTNPCGEQPLLPYES---- 265

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           C LGSINL A    +  D D L  T+RT VR+LD VID N + IE+  ++  T R IGLG
Sbjct: 266 CVLGSINLAACVKGHVLDEDLLKETVRTGVRLLDIVIDKNVYPIEEIAEATRTTRKIGLG 325

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           LMG   AL ++ +PY SPEA    +  M+ +S  A+  S  LA+  G + + +GS+W   
Sbjct: 326 LMGVHDALLMVRLPYDSPEARVWCEHVMKVVSETAVDESRVLAELLGPFPALQGSVW--- 382

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                 +RN+    IAPT TI+ + G S
Sbjct: 383 ----------------------------------TEFQVRNAAMTTIAPTGTISLLAGCS 408

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL--------WDEAMISDLKYH---D 828
             I+P +   Y + N  G   +V + +  E  +  L             + ++  H    
Sbjct: 409 SGIEPIFSFAYTRKNTVGKTFLVVNPVFKEALEETLALQGYSGDDQTHRVDEVIAHVHET 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           G++ ++  +P   +++  TA +I     +E  +  Q+ +  + S  + +    +      
Sbjct: 469 GTVQDLVWLPVAFRRLCKTALDIPWRDHVEMQAAFQREVHASISKTINMPKSATRDDCAE 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               AW +GLK     R+ S   V  +  +           T   + T S+  P   +  
Sbjct: 529 ALLLAWRLGLKGITIYRTNSREDVVLTLKEAAPSPSPVAVQTLCPAPTVSISRPKELSGR 588

Query: 948 TECEVCQ 954
           T   +CQ
Sbjct: 589 TY--LCQ 593


>gi|167463293|ref|ZP_02328382.1| Ribonucleotide reductase alpha subunit [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 868

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 265/647 (40%), Gaps = 61/647 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL---LSSFHFMCSTPTLFNSGTR 364
            +  +  + P   + R+A  +A  E    KR          L  +  +        +   
Sbjct: 77  KLTLNIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADAS 136

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 137 DELTLFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSS 196

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +
Sbjct: 197 GAVSWGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLS 252

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I + FMK V ++  W L  PD        Y ++++   + +  +A   E+K +R + A
Sbjct: 253 VCISNSFMKAVKEDLDWELVFPDTTD---PEYNEKWDGNLDAW--KALGKEVKHYRTVRA 307

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL
Sbjct: 308 RDVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPAW----GVCNL 363

Query: 603 GSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G 
Sbjct: 364 SAVNLSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGS 423

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  
Sbjct: 424 MGLAELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSG 483

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  + +    EV                  + +   GMRN   +  APT +   + G S 
Sbjct: 484 FMKNMVAEFPEV-----------------GESISQNGMRNVTVITQAPTGSTGTMVGTST 526

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G                              +    + +   ++
Sbjct: 527 GIEPYFAFEYFRQSRLGFDKQYVP--------------------IAQEWKDAHPD---EE 563

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L     TA ++     I + +  Q+W+D + S         + ++   +Y  A+ +G K 
Sbjct: 564 LPDYFITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKG 623

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               R  S      ST K  + K  AV   +  S   + G  +S  +
Sbjct: 624 VTIYRDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 670


>gi|295699386|ref|YP_003607279.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
 gi|295438599|gb|ADG17768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
          Length = 861

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/658 (24%), Positives = 269/658 (40%), Gaps = 80/658 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
             L +L ++Y         +     + RVA G+A  E  + + +VE  F + +       
Sbjct: 33  FSLDVLLEKYAKGDE----QSADDVYRRVARGVAEAEPPELRASVEEQFVDNMRHGALGA 88

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 89  GRIMSAAGSGIAATLINCFVQPVGDSIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFS 148

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 149 AIRPKGARVHTTSSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V     W L    E S      G          
Sbjct: 209 KHSKG----RWNNFNVSVGVTDEFMRAVENEEPWQLVHRAEPSPALRAAGD--------- 255

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 256 VRQREDG-LWVYSEHPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 314

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 315 GEQPLPA----YGCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLARRTRTQVRFLDDVL 370

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +    +   R IG+G  G    L ++ + Y S E  + A      +   A  
Sbjct: 371 DVTLWPLPEQYAESRAKRRIGVGFTGLGDTLVMMGLRYNSQEGRDFAVRIARLMRDEAYR 430

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+ERGA+  F  + + +                  A    SRLP D+LK+ ++  
Sbjct: 431 ASVELAKERGAFELFDAARYLE------------------AGTFASRLP-DDLKQAIRRD 471

Query: 757 GMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D     SF V +   R 
Sbjct: 472 GIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGGR-ESFDVEDYAYR- 529

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L+ E             G++ R+PD       +A ++     ++  +  Q ++D + S  
Sbjct: 530 LYREL-----------GGDVTRLPD----YFVSALQMSARDHLDMMAAVQPYVDTSISKT 574

Query: 875 LYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + +         + +Y  AW  GLK     R         S          A    DP
Sbjct: 575 VNVPADYPFDAFESLYFDAWKSGLKGLATYRPNDTLGAVLSVSSAQSDDTLAEMDQDP 632


>gi|194290033|ref|YP_002005940.1| ribonucleotide reductase subunit alpha [Cupriavidus taiwanensis LMG
           19424]
 gi|193223868|emb|CAQ69877.1| Putative ribonucleotide reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 828

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 267/640 (41%), Gaps = 80/640 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--F 351
           + +  ++L ++Y      S  ++ Q    RVA  LA  E E ++ A      L +    F
Sbjct: 15  QEISTEVLLEKYAKGEERSIADVRQ----RVARALAQAEPEDQREA-WSARFLWAQENGF 69

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGND 403
           + +      +GT     L +CF+  V D +         I+ A+ + A   +  GG+G D
Sbjct: 70  VPAGRINSAAGTGIQATLINCFVQPVGDSVSEPRDGRPSIYTAVAQAAETMRRGGGVGYD 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+
Sbjct: 130 FSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D+    + N +  + D FM+ V  +A        EV  +H+       IA  
Sbjct: 190 HAK-----DKGELSNFNISIGVTDDFMQAVQADA--------EVELVHEAEPGADMIAAG 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y R        V+R++ A  LW +++   ++   P I F    N  +   +   + ++N
Sbjct: 237 AYRRDDG---QWVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATN 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L S       C LGSINL             FD+D  A  +R A R+LDNV+D+
Sbjct: 294 PCAEQPLPS----YGCCCLGSINLTRFVRQPFTPQAAFDFDAFAEVVRVATRMLDNVLDV 349

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +   H  R +GLG +G  SAL +L + Y +  A ++A    E +   A  AS
Sbjct: 350 TFWPLPEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDEAYLAS 409

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA ++GA+  F    + +  F                    SRLP   +++ +   G+
Sbjct: 410 TELATQKGAFPLFDAEAYLRSGF-------------------ASRLP-QTVREAIGRHGL 449

Query: 759 RNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++IAPT TI  A     S  I+P++   Y +     D +   SF V +   R   
Sbjct: 450 RNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKRMPDNSY-RSFEVADHAWRLYR 508

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              M +D+                L +   TA ++  +  +      Q +ID + S  + 
Sbjct: 509 H--MGADMA--------------QLPEAFVTALQMSALDHMRMLEAVQPYIDTSISKTVN 552

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E    +    +Y +AW  GLK     R  S      S 
Sbjct: 553 VPEDYPYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLSV 592


>gi|323529940|ref|YP_004232092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
 gi|323386942|gb|ADX59032.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
          Length = 859

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/659 (24%), Positives = 268/659 (40%), Gaps = 82/659 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
               +L ++Y         +     F RVA G+A  E    + +VE    + L       
Sbjct: 30  FSTDVLLEKYAKGDE----QSADDVFRRVARGVAEAEPAALRESVEALFVDNLRHGALGA 85

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 86  GRIMSAAGTGIAATLINCFVQPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFS 145

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +  T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 146 AIRPKGARVRTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 205

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V ++  W L    E S      G          
Sbjct: 206 KHSKG----RWNNFNVSVGVTDEFMRAVEEDEPWQLVHRAEPSPALRAAGD--------- 252

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A  +W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 253 VRQREDG-MWVYSERPAREIWERIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 311

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LDNV+
Sbjct: 312 GEQPLPA----YGCCNLGPLNLTRFVLDPFAQMKGGKPSFDWDGLAQRTRTQVRFLDNVL 367

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +    +   R IG+G  G    L +L + Y S E  + A      +   A  
Sbjct: 368 DVTLWPLPQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYR 427

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+ERGA+  F  + + + G F                    SRLP +++K+ ++ 
Sbjct: 428 ASVELAKERGAFPLFDAARYLETGTF-------------------ASRLP-EDIKEAIRR 467

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D     SF V +   R
Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGGR-ESFDVEDYAYR 526

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E             G++ R+PD       +A E+     ++  +  Q ++D + S 
Sbjct: 527 -LYREL-----------GGDVNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 570

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + +      +  + +Y  AW  GLK     R         S          A    DP
Sbjct: 571 TVNVPADYPFEAFESLYLDAWKSGLKGLATYRPNETLGAVLSVSPAQADDTLAESDLDP 629


>gi|160896563|ref|YP_001562145.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
 gi|160362147|gb|ABX33760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
          Length = 840

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/645 (23%), Positives = 260/645 (40%), Gaps = 81/645 (12%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
             + + L +L ++Y         E     + RVA  LA  E E  +   E   L +    
Sbjct: 40  DLQPISLDVLREKYLKDGETGVGE----LYARVARALASVEPEARRAECEALFLANLQAG 95

Query: 352 -MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLG 401
            + +   +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G
Sbjct: 96  AIGAGRIMSAAGTDLQATLINCFVQPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVG 155

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV E
Sbjct: 156 YDFSRIRPRGAEVRATASLASGPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLE 215

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G    R ++ N +  + D FM+ V ++  W L              +     
Sbjct: 216 FITAKRTPG----RWNNFNVSVGVSDAFMQAVAEDQPWHLVH----------RARPGTAL 261

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E    Q   G+  V++ + A  LW  ++   ++   P I F D  N  +  ++   + +
Sbjct: 262 LEQGAHQRADGQW-VYQTLPARTLWDTIMRSAYDFAEPGILFLDHINDDNNLRYCEEIAA 320

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDN 634
           +N C E  L S       C+LG + L               FD++     +   VR LDN
Sbjct: 321 TNPCGEQPLPS----YGCCDLGPVILTRFVRHPFGFAGEPVFDFEAFERAVAVQVRALDN 376

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+++    + + ++ +   R IG+G  G  +AL +L + Y +PE   +A    E +   A
Sbjct: 377 VLELTWWPLPQQREESEAKRRIGVGFTGMGNALAMLRLRYDAPEGRAMAARIAERMRDAA 436

Query: 695 ISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
             ASVELA+E+GA+  F    +  +G F                    SRLP + L++R+
Sbjct: 437 YGASVELAREKGAFPKFDADGYLAEGTF-------------------ASRLP-EALRQRI 476

Query: 754 KTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +T G+RNS+ ++IAPT T++       S  I+P +   Y +   + D      + V +  
Sbjct: 477 RTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYKRKKRTADGGS-AEYAVEDHA 535

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R           +   G +         L     +A ++     I      Q ++D A 
Sbjct: 536 WRLY---------RSLGGDVQ-------QLPAYFVSALQMPAAGHIAMMQAVQPFVDTAI 579

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           S  + +      +    +YRQAW  GLK     R  +       T
Sbjct: 580 SKTVNVAADYPYEDFKDLYRQAWKAGLKGLATYRPNTILGAVLET 624


>gi|197294206|ref|YP_001798747.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853533|emb|CAM11391.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 856

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/718 (22%), Positives = 290/718 (40%), Gaps = 61/718 (8%)

Query: 217 AKVTARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
             +     ++ L +  E LT+   +  K        L  +       E  +   L  S  
Sbjct: 172 QIIDENGNIKDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFL--SQY 229

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALK 331
           +   +     + Y++ F F  ++G    Y+ Y L     +   E  +      A+  A  
Sbjct: 230 NEQQIKDIYKIAYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQG 289

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
           + E  KR ++    L +  F  +TPTL N+G +H  +  SCFL    D L  I    + +
Sbjct: 290 DFEIAKRLIKS---LINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGDSLNDIARINEFS 346

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+  + T +R  G  I G  G  +GV+   K+ + +    +Q G+R GA   
Sbjct: 347 MQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAV 406

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H D+E+FL  +K   D+  R   ++    +P+  ++   +N     F P  V   
Sbjct: 407 YLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLE 466

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           ++    +  +  + +            + I    L   +  M  E+G+P++ F D  N  
Sbjct: 467 YEKNFADIAVNMDYWYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQN 526

Query: 571 SPQQHVGVVHSSNLCTEITLNS---------SSEETAVCNLGSINLLAHFANNQFDYDKL 621
           +       V  SNLCTEI   +          ++E  +    S NL +   +N  + + +
Sbjct: 527 NTSHL--QVKFSNLCTEILQPTITSHYTDYNHTQEDKIGMDVSCNLASGHMSNMINNNTI 584

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             T+  A+ V++ V    N + +    K+N  +R++G G+MG    L   +I + S E  
Sbjct: 585 KETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGSEENK 644

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           ++ D     I+++++  S + A++    +  F+ S +  G +      +L +      M 
Sbjct: 645 DLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMF 704

Query: 740 R----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                 S   W +LKK V+  G+ NS+ +A+AP  TI  I G + S+ P  Q +  ++  
Sbjct: 705 ANIPLPSEKDWQQLKKDVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYG 764

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +         L                                 +   ++ TA++++   
Sbjct: 765 NSKTYCPMPGL--------------------------------KETSFMYVTAYKMNKYQ 792

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           LI+  +  QK +DQ  S  L +    + ++L   Y  A   G+KT YY R++     E
Sbjct: 793 LIDVIATAQKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQKLKVDE 850


>gi|293374707|ref|ZP_06621015.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325840622|ref|ZP_08167103.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
 gi|292646621|gb|EFF64623.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325490271|gb|EGC92604.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
          Length = 694

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/714 (24%), Positives = 292/714 (40%), Gaps = 71/714 (9%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           + L  E      K   K    E      E +   IE            ++  ++      
Sbjct: 25  DHLAVEAFLIEVKSKMKTFTSE-----KERYEWLIEHHYYENFFKWYHIEEIVMIKEKVF 79

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            Y+  F   ++ +   Y  Y L  N  +   E  +   + VA+ LA  +  K   A EF 
Sbjct: 80  SYQFKFQ-SFMAVSKFYKDYALKTNDHQYYLEYYEDRIVAVALYLAQGDVNK---AFEFA 135

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +    +  +TPT  N+G  R  ++ SCFL  + D L  I   L  +  L+K  GG+  
Sbjct: 136 IAMIEQRYQPATPTFLNAGKARRGEMVSCFLLEMDDSLNSITYNLNTSMQLSKIGGGVAL 195

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R     I      + GV+P +K+  D+   VNQ G+R GA  AYL  +H DVEEF
Sbjct: 196 NLSKLRARNESIKEIENAASGVLPVMKLLEDSFSYVNQLGQRPGAGAAYLNVFHWDVEEF 255

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +P  F+    +N    +F+P  V      +  +     
Sbjct: 256 LDTKKINADEKSRIQTLSIGLIVPSKFINLAKENQPMYVFAPHTVFLATGKHLDDL-NLD 314

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+           R++    L   +  M FE+G+P+I FK   N   P + +G +  S
Sbjct: 315 EVYDELVQNPA-IKKRQLDPRKLLTHIAKMQFESGYPYIVFKSNANAAHPLKEIGQIKMS 373

Query: 583 NLCTEI-------TLNSSSEETAV-----CNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLCTEI       T+    EE  +     CNLGS+N++     N  +   L  ++   + 
Sbjct: 374 NLCTEIFQLQETSTITDYGEEDQIRRDISCNLGSLNIV-----NVMERRALKESVYAGMD 428

Query: 631 VLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V  ++        +K+N    A+GLG M          I Y S  A E        
Sbjct: 429 ALTAVSSLSQIKNAPGIQKANEELNAVGLGSMNLHGYFAKNKIAYESELAKEFVRTYFMM 488

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTS 742
           +++++I  S+++A E+  ++  F+ S +  G +       D       V++    M   +
Sbjct: 489 VNYYSIERSMQIAMEKGRSFIGFEKSDYASGEYFKLYLTEDFTPKSDRVKELFHEMVIPT 548

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L K VK  GM ++  +AIAPT +I  I   + SI P    +  ++  +      
Sbjct: 549 KNDWAHLAKSVKENGMYHAYRLAIAPTQSIGYIQNATASILPVVDLVERRTYGNATTYYP 608

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             +L                                 D    + +A+ +D M ++E  ++
Sbjct: 609 MPYLAE-------------------------------DNMFFYKSAYRMDMMKVLELIAQ 637

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Q  IDQ  S  LY+D  +  ++L   Y  A  +GLK+ YY R+++ +  E +T
Sbjct: 638 VQPHIDQGISTTLYVDSHTSTRELVRYYLYAHHLGLKSLYYTRTKNLSFEECTT 691


>gi|329769049|ref|ZP_08260471.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839540|gb|EGF89116.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 696

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/687 (24%), Positives = 291/687 (42%), Gaps = 69/687 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           +     +EE     +  + + D  +  L     Y+ +F   Y+     Y  Y L  N  +
Sbjct: 50  KRLRYLVEENYYYNIFDKYIEDEIVECLELAANYKFEFK-SYMAASKFYKDYALKTNDKK 108

Query: 314 --IEMP-QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLS 369
             +E   Q  F+ VAM LA         A E    +       +TPT  NSG  R  +L 
Sbjct: 109 QYLENYNQHVFI-VAMYLA---DGNVSLAKELMISMLEQRVQPATPTFLNSGRSRRGELV 164

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GVIP  K
Sbjct: 165 SCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGESIKGIKGVAKGVIPVAK 224

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                    +Q G+R GA   YL  +H DV EFLD +K   D+  R   ++T   +P LF
Sbjct: 225 SLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEELRLPTISTGIIVPSLF 284

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
                +N  + +F P  + + + L   + ++A   Y  +    E  + RK +A  +   +
Sbjct: 285 FDLARENKDFYMFGPHSIYEEYGLVLDDIDLA--KYYDEFVVNENIMKRKYNARDMLNLI 342

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ET 597
                ++G+P++ FKD  N     + +G V  SNLCTEI     +               
Sbjct: 343 AQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEIFQLQETSVIKDYGEGDIIKRD 402

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNL S+N++     N  +  K+  +I + +  L  V D           K+N    ++
Sbjct: 403 ISCNLASLNIV-----NVMESKKVKESIYSGMDALTFVSDSTKIKNAPGVVKANEEFHSV 457

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S EA + A+     ++++ +  S+++A++R  ++  F+ S 
Sbjct: 458 GLGAMNLNGYLAKNCIAYDSEEAKDFANVFFMMMNYYTLERSMQIAKQRGQSFKDFEKSD 517

Query: 716 WDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G +       D +    +V++    +   ++  W  LK R+K  G+ ++  MAIAPT
Sbjct: 518 YYNGSYFAKYIEKDYLPKSDKVKELFEGIYIPTKEDWHSLKNRIKENGLYHAYRMAIAPT 577

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   + S+ P    +  ++  + +      +L  +                    
Sbjct: 578 QSISYVQNSTSSVLPIVDKIERRTYGNAETFYPMPYLSPK-------------------- 617

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
                       +  + +AF +D M LI+  S  Q+ +DQ  S+ LY++   + ++L   
Sbjct: 618 -----------TQWYYKSAFTMDQMKLIDLMSVIQEHVDQGISVILYVNSDITTRELARY 666

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y  A   GLK+ YY R++   SVE+ T
Sbjct: 667 YIYAHHKGLKSLYYTRNK-LLSVEECT 692


>gi|296134979|ref|YP_003642221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
 gi|295795101|gb|ADG29891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
          Length = 811

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/634 (23%), Positives = 256/634 (40%), Gaps = 78/634 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           + + L +L ++Y      +          RVA  LA++E +  +    F   L+   F+ 
Sbjct: 4   QDISLDVLAEKYAKGDEHTIA----DIHTRVARALAVEEADPARSEALFRQALADG-FVP 58

Query: 354 STPTLFNSGTR-HPQLSSCFLTTVPDDLYGI-------FGALQENAMLAKYSGGLGNDWT 405
           +   +  +GT     L +CF+  V D +          + AL + A   +  GG+G D++
Sbjct: 59  AGRIMSAAGTDIQATLINCFVQPVGDSVSDDKDGKPSIYKALAQAAETMRRGGGVGYDFS 118

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GAH+ GT+ ++ G + F++V + +   V   G R+GA    L   H D+E F+  
Sbjct: 119 RIRPAGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRADHPDIEAFIHA 178

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+    + N +  +   FM+ V  +A   L       D     G          
Sbjct: 179 K-----DQGAFKNFNLSVGVSAAFMQAVENDAQIDLVHKARPGDDQLAAGA--------- 224

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ   G + V+R + A  LW +++   ++   P I F D  N  +   +     ++N C
Sbjct: 225 -RQRADG-LWVYRSVRARDLWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPC 282

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC 640
            E  L     +   C LGSINL     +      +FD +   +  R AVR+LDNV+D+  
Sbjct: 283 AEEFLP----DYGCCCLGSINLTRFVRDPFTPQARFDAEGFQAVTRVAVRMLDNVLDVTY 338

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +        R IGLG +G   A  +L + Y S +A   A +    +   A +ASV+
Sbjct: 339 WPLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADMARTLRDAAYAASVD 398

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GA+  F    +    F                     RLP + L+  +   G+RN
Sbjct: 399 LAKEKGAFPLFDAKKYLDSGF-------------------AKRLP-EALRADIAAHGIRN 438

Query: 761 SNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           S+ +A+APT TI+       S  I+P++  +Y +     D T    + V +   R     
Sbjct: 439 SHLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKRMADNTT-REYEVADHAWRLY--R 495

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           +M  D+                L     TA E+     ++     Q +ID + S  + + 
Sbjct: 496 SMGRDMSA--------------LPPAFVTALEMSAADHMKMLQVVQPFIDTSISKTVNVP 541

Query: 879 EPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
                     +Y QAW  GLK     R  +    
Sbjct: 542 ADYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575


>gi|241764581|ref|ZP_04762598.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
 gi|241365984|gb|EER60605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
          Length = 829

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 146/633 (23%), Positives = 251/633 (39%), Gaps = 81/633 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL--LSSFHFMC 353
           + L +L ++Y      +     +  + RVA  LA  E  K ++  E   L  L +     
Sbjct: 34  ISLDVLREKYLKPGETNV----EDLYRRVAHALASVEAPKLRQKYEELFLANLHAGAIGA 89

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G        I+ AL+E A   +  GG+G D++
Sbjct: 90  GRIMSAAGTDIQATLINCFVQPVGDCIQGVDDEGFPGIYEALREAAETMRRGGGVGYDFS 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV+EF+  
Sbjct: 150 RIRPKGAQVKATASVASGPCSYMNVFDQSCSTVESAGARRGAQMGVLRIDHPDVQEFITA 209

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  + D F++ V  +  W L        +H        +A   +
Sbjct: 210 KRTPG----RWNNFNVSVGVSDAFIEAVQHDRPWEL--------VHRARPGTAAMAQGAH 257

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +R        V+  + A ALW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 258 QRADG---QWVYATVQARALWDIIMKSAYDFAEPGILFLDHINEDNNLNYCEAIAATNPC 314

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN-------QFDYDKLASTIRTAVRVLDNVIDI 638
            E  L S       C+LG + L     +         FD++     +   VR LDNV+D+
Sbjct: 315 GEQPLPS----YGCCDLGPVILTRFVRHPFGFDGLPSFDFEAFEKVVALQVRALDNVLDV 370

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R IG+G  G  + L +L + Y   E   +A    E +   A  AS
Sbjct: 371 TFWPLPQQRDEAMAKRRIGVGFTGMGNTLAMLCLRYDMQEGRAMAARIAEAMRDAAYRAS 430

Query: 699 VELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           VELA+E+GA+  F+   +   G F                    SRLP + +K+ ++  G
Sbjct: 431 VELAREKGAFPKFEAEPYLAAGTF-------------------ASRLP-ESIKEAIRANG 470

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +  +Y +     D +  + + V +   R  
Sbjct: 471 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWMYKRKKREADGST-SEYSVEDHAWRLY 529

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    +   G +       + L     +A E+     I      Q ++D A S  +
Sbjct: 530 ---------RELGGDV-------NALPDYFISALEMPAEGHIAMMEAVQPFVDTAISKTV 573

Query: 876 YLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +      +    +Y QAW   LK     R  S
Sbjct: 574 NIPADYPYEDFKDLYLQAWRARLKGLATYRPNS 606


>gi|253573377|ref|ZP_04850720.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846905|gb|EES74910.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 864

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/650 (22%), Positives = 275/650 (42%), Gaps = 67/650 (10%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNL-LSSFHFMCSTPTLFNSGTR 364
            +  +  + P+  + R+A  +A  E   EK+K   E +   L  +  +        +G  
Sbjct: 82  KLTLNIEKTPEEMWDRLAKAMASVEETPEKQKEWEEKFRYILDDWKLVPGGRIAAGAGAS 141

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 142 DELTLFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSS 201

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +
Sbjct: 202 GAVSWGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLS 257

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + + FMK V ++  W L  PD     ++ Y + ++   + ++    +     +R + A
Sbjct: 258 VCVSNAFMKAVKEDLDWDLVFPDTT---YEDYNEVWDGDLDKWKADGRKVIH--YRTVKA 312

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL
Sbjct: 313 REIWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGW----GVCNL 368

Query: 603 GSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL   +   + D  +D+LA+T R +VR LDNVI+   +  E+ +K+    R +GLG 
Sbjct: 369 SAMNLSKFYDEEKHDVAWDELATTTRYSVRFLDNVINKTPYHFEENEKNQKKERRVGLGT 428

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F+   + Q  
Sbjct: 429 MGLAELMIKLNIRYGSPESLEFLDKLYGFIAKEAYLASADIAEEKGSFPAFEADKFLQSG 488

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  +   +  EV                  + V+T G+RN   +  APT +   + G S 
Sbjct: 489 FMKNMTEVYPEV-----------------GEAVRTKGIRNVTIITQAPTGSTGTMVGTST 531

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G     +   V   ++   W +A       H G         + 
Sbjct: 532 GIEPYFAFKYYRQSRLG----FDEQFVPIAQE---WMDA-------HPG---------EP 568

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L     TA ++     I   +  Q+W+D + S         + +    +Y  A+ +G K 
Sbjct: 569 LPDYFVTAMDLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKG 628

Query: 900 TYYLRSRSATSVEKST------LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
               R  S       T       +    + +A     P +++     P +
Sbjct: 629 VTIYRDGSRDVQVLQTEKKEEKKEEASAQPSAAATPQPANASVQASSPKT 678


>gi|197104081|ref|YP_002129458.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
 gi|196477501|gb|ACG77029.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
          Length = 745

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/633 (24%), Positives = 257/633 (40%), Gaps = 88/633 (13%)

Query: 291 FAFEY-LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLL 346
            AF+  L  +I   +Y F   +G+     +A + RVA  +A  E+ K +RA      + L
Sbjct: 1   MAFDNPLAAEIWSGKYRFAQPDGAGDGSVEATWARVAEAIARAESPKLRRAWRERFEDAL 60

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             F F+ +   L  +GT     L +CF +  +PDDL GIF  +QE A+  +  GG+G D+
Sbjct: 61  GDFQFLPAGRILAGAGTARTVTLFNCFVMGAIPDDLEGIFRHVQEAAVTMQQGGGVGMDF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + G    + G + F+ V +     +   G+R+GA+   L   H D+E F+D
Sbjct: 121 STIRPSGAPVRGVGADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFID 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++    D  R  + N +  + D F++ + ++  W L                       
Sbjct: 181 AKR----DGARLRNFNLSVLVTDAFLETLERDGEWPLVF--------------------- 215

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                   +  V R + A  LWR+++   ++   P + F D  N R+   H   + +SN 
Sbjct: 216 --------DGVVHRTVRAADLWRRLMQGTYDCAEPGVIFIDRVNARNNLAHCETITASNP 267

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C LGSINL            + D D+LA+  RTAVR LDNVID++
Sbjct: 268 CGEQMLPP----YGACLLGSINLARLVPAPFEPGAELDEDRLAALTRTAVRFLDNVIDVS 323

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + +   +      R IGLG+ G   AL    +PY    + E+    +E I   A  AS 
Sbjct: 324 RYPLPAQEAEAKAKRRIGLGVTGLADALIFCGVPYGGERSAELTRRWLEVIKREAYRASA 383

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA E+GA+  +                ++ E  +   ++        E ++ +   G+R
Sbjct: 384 ELAAEKGAFPLYD--------------PVMLETPNLKGLDP-------ETRELIARHGLR 422

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N    +IAPT T + + G  S  I+P +   Y +     D                   E
Sbjct: 423 NGCLTSIAPTGTTSLLAGNVSSGIEPVFAFAYTRKVRQPD---------------GSSRE 467

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
             + D         + +  P     I  TA  + P   +   +  Q+ +D + S  +   
Sbjct: 468 EAVEDYALAVWKRLHGQAEPP--ADIFVTAQTLTPADHLRIQAAAQEVVDSSISKTVNCP 525

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           E  +      +Y   W  G K     R  + T 
Sbjct: 526 EDIAFDAFSDVYLDGWRRGCKGLTTYRPNAVTG 558


>gi|329575045|gb|EGG56597.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1467]
          Length = 591

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/603 (23%), Positives = 255/603 (42%), Gaps = 64/603 (10%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A+   + +    +  +TP+  N+G  R  +L SCFL  V DD+  I  +     
Sbjct: 5   DGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSFNSAL 64

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L++  GG+G   + +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   Y
Sbjct: 65  QLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVY 124

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L  +H D+E FL  +K   D++ R   ++    +PD F +    N    LFSP  V   +
Sbjct: 125 LNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREY 184

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +     +I  E Y+       I+  RKI A  L  ++     E+G+P+I   D  N  +
Sbjct: 185 GVPYSYVDITKE-YDNLVANPNIRK-RKIKARDLENEISKSQQESGYPYIINIDTANKNN 242

Query: 572 PQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
                G +  SNLC+EI        +N   E   +    S NL +    N  +      +
Sbjct: 243 --PIDGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKS 300

Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +R   R L  V D +    +   +  N     IGLG MG  +     H+ Y S E+++  
Sbjct: 301 VRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFT 360

Query: 684 DESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL- 736
           D     +++  +  S ++A+E    + + + S +  G +    I         +V++   
Sbjct: 361 DIYFMLLNYWTLMESNQIAKERNQVFHNLEKSDYASGAYFDKYIEGNFTPKFDKVKEIFK 420

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +   W  L+  VK  G+ + N +A+AP  +I+ I   S SI P  + +  +    
Sbjct: 421 DIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQ--- 477

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                                E  I  + Y          + +D    + +A+++D   +
Sbjct: 478 ---------------------EKKIGKIYYPA------PYLANDTIPYYTSAYDMDMRKV 510

Query: 857 IESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           I+  +  Q+ +DQ  SL L++               + + + L+ +   A+  G+K+ YY
Sbjct: 511 IDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYY 570

Query: 903 LRS 905
           +R+
Sbjct: 571 IRT 573


>gi|251797996|ref|YP_003012727.1| ribonucleoside-diphosphate reductase, subunit alpha [Paenibacillus
           sp. JDR-2]
 gi|247545622|gb|ACT02641.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. JDR-2]
          Length = 684

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 165/703 (23%), Positives = 287/703 (40%), Gaps = 79/703 (11%)

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           +K  +      Y   + +Y  E ++A         F                  Y+ +  
Sbjct: 37  EKLDYLIENDFYENVYDQYTYEQIEAVFTLTESSGFQFE--------------SYMAISK 82

Query: 301 LYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Y  Y +  N     +E        VA+ L   +  K   A+     +       +TPT 
Sbjct: 83  FYKDYAMKTNDKSKYLEQYPDRVAIVALNLGEGDGAK---ALRIAEAMIEQRLQPATPTF 139

Query: 359 FNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            N+G  R  ++ SCFL  + D L  I   L     L+K  GG+  + + +RG G  I G 
Sbjct: 140 LNAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKLRGRGEAIKGV 199

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G ++GV+P LK+  D     +Q G+RKG+   Y   +  D+ EFLD +K   D++ R  
Sbjct: 200 EGAAKGVMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDIIEFLDCKKINADEKTRIK 259

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IP+ F +   +N    +F P  V   +D +  + ++    YE      ++   
Sbjct: 260 TLSIGLIIPNKFYELAAKNETLYVFGPHSVHKAYDKHLDDMDMDV-MYEELLANDKVVKK 318

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             ++A  +  K+ ++  E+G+P+I  K   N     + +G V  SNLCTEI     +   
Sbjct: 319 AVMNARDMMTKIASIQLESGYPYIMNKSNANRVHALKDIGQVKMSNLCTEIFQVQETSTI 378

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIE 644
                         CNL S+N++           KL  ++   +  L  V D++      
Sbjct: 379 NDYGMDDVIRRDISCNLASLNIVNVMERK-----KLKESVHVGIEALTTVSDVSEIDNAP 433

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +K+N    ++GLG M          I Y S EA E A      +++++I  S+E+A+E
Sbjct: 434 GVRKANEELHSVGLGAMNLNGFFAKNKIAYESDEAKEFASAFFMMMNYYSIEKSMEIAKE 493

Query: 705 RGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIG 757
           RGA +  F  S + +G +       D       V++    M   S   W +LK++V+  G
Sbjct: 494 RGASFKDFDRSEYAKGTYFTRYIETDFRPASDSVKELFEGMEIPSPQDWADLKEKVQKNG 553

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           + ++  +AIAPT +I+ I   + S+ P  +++  ++  +        +L           
Sbjct: 554 LYHAYRLAIAPTQSISYIQNSTSSVMPIVEHIETRTYANSTTYYPMPYLA---------- 603

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                 D    + +A+ ID   LI+     Q+ +DQ  S  L++
Sbjct: 604 ---------------------QDNYFYYKSAYNIDQFKLIDLIWEIQQHVDQGISTVLHV 642

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + ++L   Y  A   GLK+ YY R++   SVE+ T   V
Sbjct: 643 NSNVTTRELARFYIYAAQKGLKSLYYTRTK-RLSVEECTSCAV 684


>gi|83717926|ref|YP_440130.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
 gi|83651751|gb|ABC35815.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 881

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/653 (23%), Positives = 260/653 (39%), Gaps = 82/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
             + +L ++Y               + RVA G+A  E  + +  +E  F   L       
Sbjct: 53  FSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGA 108

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                    +    L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 109 GRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFS 168

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 169 AIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEA 228

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM  V Q+  W L    E S      G          
Sbjct: 229 KHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDLHRR----- 279

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N C
Sbjct: 280 -----DDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPC 334

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 335 GEQPLPA----YGCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVL 390

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A  
Sbjct: 391 DVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYR 450

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA ERGA+  F  S + ++G F                    SRLP D++++ ++ 
Sbjct: 451 ASVELACERGAFPLFDASRYLEEGTF-------------------ASRLP-DDIREAIRR 490

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +    F V +   R
Sbjct: 491 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQT-FAVEDYAYR 549

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      +   G +       D L     +A ++     +   +  Q +ID + S 
Sbjct: 550 LY---------RELGGDV-------DALPGYFVSALQMSAHDHLAMMAAVQPYIDTSISK 593

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + +         + +Y  AW  GLK     R          T +  D    A
Sbjct: 594 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEA 646


>gi|254173913|ref|ZP_04880584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
 gi|214032162|gb|EEB72993.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
          Length = 1361

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/554 (24%), Positives = 245/554 (44%), Gaps = 54/554 (9%)

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
               G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE WH 
Sbjct: 754  HNTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHP 813

Query: 458  DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
            D+E+F+  ++          + N +  I + F + + +   + L +P             
Sbjct: 814  DIEKFIHAKERN-TGTNVLSNFNISVGIWEDFWEALKEGKRYPLVNPRTGE--------- 863

Query: 518  FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576
                                ++I   +L+ ++  M +    P + F D  N R+      
Sbjct: 864  ------------------KVKEIDPKSLFEELAFMAWSKADPGVIFFDVINRRNVLAEAK 905

Query: 577  -GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
             G + ++N C E  L     E   CNL SINL      +      FD+D+ A  I+   +
Sbjct: 906  GGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAK 961

Query: 631  VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
             LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E      ++ E++
Sbjct: 962  YLDNAIDVNRFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFAFMRKATEYL 1021

Query: 691  SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            +F+A   SVE A++RG +  ++ S +  G  P++                   LPWDEL 
Sbjct: 1022 TFYAYKYSVEAAKKRGTFPLYEKSAYKDGELPVEG----------FYHREIWTLPWDELV 1071

Query: 751  KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F  V+    +EL
Sbjct: 1072 EEIKRHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFESEL 1131

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            K+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  +  I + +  Q W+  +
Sbjct: 1132 KKRGLWSDEILRKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILAQANIQLWLTDS 1191

Query: 871  QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNA 925
             S  + + ++ + + +   Y  A+ +G K     R  S +    SVE    K V  K ++
Sbjct: 1192 ASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRKRVPAKPSS 1251

Query: 926  VPVTDPNSSTHSLG 939
              V    +   +  
Sbjct: 1252 YAVEKLKAVVEAEP 1265



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 146/377 (38%), Gaps = 87/377 (23%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V            D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIKWAIKRAMLEVGVHD--------DKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +                 
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKI-------------- 102

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                   N  +L+ I +                              L    + +SR L
Sbjct: 103 -------LNKDKLDEIDKRFS---------------------------LNALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  E                      + + P++                  +E V  +  
Sbjct: 129 IRNE-------------------KGEIVESPRELFERVATLAVIPDL--LYDERVYDK-- 165

Query: 270 HESMMDFDLVYLANDLKYERDFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAM-- 326
            E   + DL  + + L++  +F  +Y +G   L   +F  +     E+ +   M+V++  
Sbjct: 166 -EGKHEQDLSRVKHYLEHFEEFDGKYSIGRFKLNKYHFERLVKLYRELAEKGKMKVSIDE 224

Query: 327 GLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            L + E     + E    E++ L++S  FM +TP L NSG     LS+CF+  + DD+  
Sbjct: 225 FLGMLENGAFDDYESEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMES 284

Query: 383 IFGALQENAMLAKYSGG 399
           I  A  + AM+ K  GG
Sbjct: 285 IMKAAHDVAMIQKSGGG 301


>gi|257140761|ref|ZP_05589023.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 843

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/653 (23%), Positives = 260/653 (39%), Gaps = 82/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMC 353
             + +L ++Y               + RVA G+A  E  + +  +E  F   L       
Sbjct: 15  FSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGA 70

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                    +    L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 71  GRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFS 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 131 AIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEA 190

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM  V Q+  W L    E S      G          
Sbjct: 191 KHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDLHRR----- 241

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N C
Sbjct: 242 -----DDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPC 296

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 297 GEQPLPA----YGCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVL 352

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A  
Sbjct: 353 DVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYR 412

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA ERGA+  F  S + ++G F                    SRLP D++++ ++ 
Sbjct: 413 ASVELACERGAFPLFDASRYLEEGTF-------------------ASRLP-DDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +    F V +   R
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQT-FAVEDYAYR 511

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      +   G +       D L     +A ++     +   +  Q +ID + S 
Sbjct: 512 LY---------RELGGDV-------DALPGYFVSALQMSAHDHLAMMAAVQPYIDTSISK 555

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + +         + +Y  AW  GLK     R          T +  D    A
Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEA 608


>gi|194172963|ref|YP_002003607.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
 gi|114796001|gb|ABI79175.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
          Length = 771

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/838 (22%), Positives = 331/838 (39%), Gaps = 102/838 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  +G  ++F+ +RL         G  + +   +  + YK +YDG +  ++  A+I S
Sbjct: 4   KVIKSNGCEVAFDPERLNKAAIFGDDG--NGNWSHIALDAYKRLYDGCTTKEVNQAIIDS 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   K+  ++++  R L+ ++ +E      K P            P ++   +E+G  
Sbjct: 62  CVSR--KDEEHSRMAGRVLIGQIYKEAFGGFTKIPSL----------PSFYNTMVEKGYW 109

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323
             + +      +L  L   + + +D  + Y  L+   D+Y +      +  E PQ  FM 
Sbjct: 110 EDMGYSFT---ELNTLDAVIDHSKDLGYGYAVLKQFRDKYGIKDTLKDTLFESPQMMFMG 166

Query: 324 VAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           +AM + +K   KE+R    V+ Y  LS       TP L    T     +SC +    D  
Sbjct: 167 IAMAV-MKNMPKERRINDVVKLYTYLSDLKINAPTPYLNGLRTGKTGYASCCVIKADDTA 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A +    +     G+G   +  R  G  + G   K  G IP+ +  +   V  N+
Sbjct: 226 KSIGVAREVAYTMTVNQAGIGYYLSS-RSAGDGVRGNTIKHMGKIPYYRGID-AGVKENR 283

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R G+           ++E + LR       +R + M+ +  I   F+ RV +N  W 
Sbjct: 284 QQSRGGSATVSFLALDPQIDELIRLRNPMTVASKRINTMDYSIGINRSFINRVAKNLDWM 343

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADR---GEIKVFRKISAVALWRKMLTMLFETG 557
           L S      LH+     F ++ E ++ + DR    +      I A  L  ++LT   E G
Sbjct: 344 LVSYKHAPQLHE---GIFTMSMEEFDAEVDRIAKDDSIPKTWIRARDLAVELLTQRIEVG 400

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--------------SSEETAVCNLG 603
             ++ + D  N         V++SSNLC EI L +                 E A+C L 
Sbjct: 401 RLFVYWTDEMNRH--TPFKDVIYSSNLCAEIALPTKGYSDMRNIFKHDVDDGEVALCFLS 458

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+         +   ++        V ++DNV++I  +  E  + +    R+IG+GL   
Sbjct: 459 SL------VAGRVTPEEYEDVAYYTVLMIDNVMEIMTYPYENMESTVKKRRSIGVGLTNV 512

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +    + Y SPE+ ++  +  E  S+    AS+ LA+ERG       + + +G  PI
Sbjct: 513 AHFIASHKVTYGSPESKQLVHDLAELHSYSLHKASLRLAKERGVCEWMHKTKYPEGWLPI 572

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSI 782
           D+     +  D +  + + +  W+ L+K +    G+RNS   A  P  + +     +  +
Sbjct: 573 DTYN---KEVDSVVKDPSLKQDWEGLRKEIIENGGLRNSVLEAYMPNESSSLATNTTNGV 629

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  +++  K +  G    +                                    D+LK
Sbjct: 630 YPVREHIIFKKSPQGQVLFIVPDY--------------------------------DELK 657

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
           + + +A+++D   +I+  +  QK+  QA S +LY+D         S K+      +A   
Sbjct: 658 EYYTSAWDVDTNDMIDMYAVIQKFTGQAISADLYIDYTKLKDGKISMKEQLGYLIRATKF 717

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           G+KT YYL SR       S  + +  K  A   T  N       I  S   D  CE C
Sbjct: 718 GMKTWYYLNSRVGAG--DSLAEELHAKKQAEDETRKNYPL----IADSSVEDPYCESC 769


>gi|167616835|ref|ZP_02385466.1| ribonucleotide reductase system [Burkholderia thailandensis Bt4]
          Length = 843

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/653 (23%), Positives = 264/653 (40%), Gaps = 82/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCS 354
             + +L ++Y               + RVA G+A  E  + +  +E   +       + +
Sbjct: 15  FSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGA 70

Query: 355 TPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
              +  +G+     L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 71  GRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFS 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 131 AIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEA 190

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM  V Q+  W L    E S      G          
Sbjct: 191 KHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDLHRR----- 241

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N C
Sbjct: 242 -----DDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPC 296

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 297 GEQPLPA----YGCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVL 352

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A  
Sbjct: 353 DVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAYR 412

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA ERGA+  F  S + ++G F                    SRLP D++++ ++ 
Sbjct: 413 ASVELACERGAFPLFDASRYLEEGTF-------------------ASRLP-DDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +    F V +   R
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQT-FAVEDYAYR 511

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      +   G +       D L     +A ++     +   +  Q +ID + S 
Sbjct: 512 LY---------RELGGDV-------DALPGYFVSALQMSAHDHLAMMAAVQPYIDTSISK 555

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + +         + +Y  AW  GLK     R          T +  D    A
Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEA 608


>gi|310831538|ref|YP_003970181.1| putative ribonucleotide reductase large subunit [Cafeteria
           roenbergensis virus BV-PW1]
          Length = 922

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/473 (32%), Positives = 245/473 (51%), Gaps = 26/473 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           +  ++  DG   + +  ++   + +  +G   +++    ++ +T  ++Y G++  +L+  
Sbjct: 15  QYYVIKRDGRRENVHFDKITQRISKLLTGNMNKNIDIINIVKKTITSIYPGITTKELDNQ 74

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
             +    +     +YA +  R  +  L +E + T  +K +      +      Y   +IE
Sbjct: 75  SAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEKMEL-----INDNLHIYDSEWIE 129

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              K R             L   + Y RD++F++ G++ +   Y   ++G  IE PQ  F
Sbjct: 130 FIKKHR-----------NKLNKIIDYNRDYSFDFFGIKTMERTYITKLDGHLIERPQDVF 178

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVA  +   + +K    ++ YNL+S  +F  ++PTLFN+G +   L SCFL    D + 
Sbjct: 179 MRVASLVHCGDLQKT---IDSYNLMSKKYFTHASPTLFNAGNKKGNLVSCFLLGTEDSMT 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI     + A ++K+ GG+G   + VR  G+ I  TNG S G++P L+V N     VNQ 
Sbjct: 236 GISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGHSDGIVPMLQVYNSICRYVNQS 295

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKG+   YLE  H D+ +FL+LRKNTG +  R  D+  A W+ DLFM +V  N  W L
Sbjct: 296 GRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNNDWYL 355

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F PD+   L+D+YG E+E  Y  Y       E K  +KI A  LW  ++T  FETG P++
Sbjct: 356 FCPDKAPGLNDVYGDEYETLYWKYV-----SEEKYNKKIKARKLWEAIMTAQFETGSPYM 410

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
            +KD  N +S Q+++G++ SSNLC EI   S S ETA CNL SI L     + 
Sbjct: 411 LYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIALPNFIKSK 463



 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 110/397 (27%), Positives = 178/397 (44%), Gaps = 74/397 (18%)

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G    L LL +
Sbjct: 542 GKDYDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRV 601

Query: 673 PYASPEAVEIADESMEFISFHAISA----------------------------------- 697
           PYAS  A++I ++    I   A++A                                   
Sbjct: 602 PYASKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDN 661

Query: 698 ------------------SVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
                             S EL + +   AYS+F+GS + +G                L 
Sbjct: 662 FECYPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEGKLQYHLWNRTPINISTLI 721

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             ++    WD L   +K  G RNS   A+ PTA+ + + G  +S +P   N+Y +  ++G
Sbjct: 722 EGKS----WDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 777

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T++E+   ++I
Sbjct: 778 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 836

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           +  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+ + +  K T+
Sbjct: 837 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 896

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                          N+S + +   +    D  C +C
Sbjct: 897 -------------LLNNSQNKINSQNMMEEDEGCVMC 920


>gi|167578702|ref|ZP_02371576.1| ribonucleotide reductase system [Burkholderia thailandensis TXDOH]
          Length = 843

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/653 (23%), Positives = 265/653 (40%), Gaps = 82/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCS 354
             + +L ++Y               + RVA G+A  E  + +  +E   +       + +
Sbjct: 15  FSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALGA 70

Query: 355 TPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
              +  +G+     L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 71  GRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFS 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 131 AIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEA 190

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM  V Q+  W L    E S      G          
Sbjct: 191 KHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDLHRR----- 241

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N C
Sbjct: 242 -----DDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPC 296

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 297 GEQPLPA----YGCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDVL 352

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + +      R IG+G  G   AL +L + Y + E  + A      +   A  
Sbjct: 353 DVTLWPLPEQRHEAQQKRRIGIGFTGLGDALVMLGLRYDAQEGRDFAARVARVMRDAAYR 412

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA ERGA+  F  S + ++G F                    SRLP D++++ ++ 
Sbjct: 413 ASVELACERGAFPLFDASRYLEEGTF-------------------ASRLP-DDIQEAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +    F V +   R
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQT-FAVEDYAYR 511

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                      +   G +       D L     +A ++     +   +  Q +ID + S 
Sbjct: 512 LY---------RELGGDV-------DALPGYFVSALQMSAHDHLAMMAAVQPYIDTSISK 555

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + +         + +Y  AW  GLK     R          T +  D    A
Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEA 608


>gi|310641425|ref|YP_003946183.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309246375|gb|ADO55942.1| Ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 694

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/715 (22%), Positives = 293/715 (40%), Gaps = 67/715 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E +    K+ Q+    +      +     IE        +    D   +    
Sbjct: 19  FQLEKDQEAVAEFMKEVQE-RSLKFADTAAQVLY-MIENDYYENFYNSYTADE--INDIF 74

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            + +  +F F  Y+     Y  Y +  N  ++ + + +  RVA             A   
Sbjct: 75  HITHSYNFKFPSYMAASKFYTDYAMKSNDRKVYL-EHYPDRVAAVALHLGRGNADTARLL 133

Query: 343 YNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              +       +TPT  N+G  R  +L SCFL  + D L  I   L     L+K  GG+ 
Sbjct: 134 SRSMMEQRLQPATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVA 193

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G  G ++G++P LK+  D     +Q G+RKG+  AY   +  DV E
Sbjct: 194 VNLSKLRSRGEAIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLE 253

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D+R R   ++    +P+ F K    N    +F+P  V   +  +  + +  
Sbjct: 254 FLDSKKINADERVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDMD-L 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+       +K    +SA  +  K+  +  E+G+P+I  K   N     ++VG +  
Sbjct: 313 DEMYDTLLADDRVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQIKM 372

Query: 582 SNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E A             CNL S+N++     N  ++ K+  ++   +
Sbjct: 373 SNLCTEIFQLQETSEIADYGQQDIIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGM 427

Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L +V D+          K+N    ++GLG+M     L    I Y S EA +       
Sbjct: 428 IALTSVSDMTQVANAPGVAKANREMHSVGLGVMNLHGYLAKNKIAYESNEAKDFVRTFFM 487

Query: 689 FISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRT 741
            +++H+I  S+E+A+    ++  F+ S +  GV+       D     A V++    +   
Sbjct: 488 TMNYHSIEKSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPTTARVQELFKDIYIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  WD LK  V   G+ ++  MAIAPTA+I+ I   + S+ P  + +  ++  +     
Sbjct: 548 TQADWDTLKADVMKNGLYHAYRMAIAPTASISYIQNATSSVMPIVEQIETRTYANSTTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L                                 D    + +A+++D   +++  +
Sbjct: 608 PMPYLQK-------------------------------DNVFFYKSAYQMDQFKVLDLIA 636

Query: 862 RRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             Q  +DQ  S  L+++   + ++L   Y  A   GLK+ YY R++  +  E  T
Sbjct: 637 EIQPHVDQGISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKKLSVEECLT 691


>gi|145639186|ref|ZP_01794793.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271748|gb|EDK11658.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 504

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/520 (25%), Positives = 213/520 (40%), Gaps = 37/520 (7%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CDDSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L++ +  +   FE  Y  YE+     +    R + AV ++  ++  
Sbjct: 350 GGEITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQE 405

Query: 553 LFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVCNLG 603
              TG  +I   D CN  S     V  V  SNLC EI         +N  + E A+C L 
Sbjct: 406 RASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLS 465

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           + NL         + D+L      AVR LD ++D      
Sbjct: 466 AFNLGKIE-----NLDELEELADLAVRSLDALLDYQVPCC 500


>gi|209516306|ref|ZP_03265163.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
 gi|209503242|gb|EEA03241.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
          Length = 861

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/653 (24%), Positives = 269/653 (41%), Gaps = 83/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
             L +L ++Y         +     F RVA G+A  E  + + +VE    + L       
Sbjct: 33  FSLDVLLEKYAKGDE----QSADDVFRRVARGVAEAEPPELRASVEALFVDNLRHGALGA 88

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG--------ALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G+          AL + A   +  GG+G +++
Sbjct: 89  GRIMSAAGSGIAATLINCFVQPVGDSIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNFS 148

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H TN  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 149 AIRPKGARVHTTNSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V  +  W L    E S      G          
Sbjct: 209 KHSKG----RWNNFNVSVGVTDEFMRAVENDEPWQLVHRAEPSPALRSAGD--------- 255

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 256 VRQREDG-LWVYSEHEARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 314

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 315 GEQPLPA----YGCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLAWRTRTQVRFLDDVL 370

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +    +   R IG+G  G    L +L + Y S E  + A      +   A  
Sbjct: 371 DVTLWPLPQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYR 430

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASV+LA+ERGA+  F  + + + G F                    SRLP D++++ ++ 
Sbjct: 431 ASVDLAKERGAFELFDAARYLETGTF-------------------ASRLP-DDIQQAIRR 470

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ M  D     SF V +   R
Sbjct: 471 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRTKMMADGGR-ESFDVEDYAYR 529

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E             G++ R+PD        A E+     ++  +  Q ++D + S 
Sbjct: 530 -LYREL-----------GGDVTRLPD----YFVNALEMSARDHLDMMAAVQPYVDTSISK 573

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS-TLKGVDGKLN 924
            + +         + +Y  AW  GLK     R         S T    D  L 
Sbjct: 574 TVNVPADYPFDAFESLYFDAWKSGLKGLATYRPNDTLGAVLSVTAAQADDTLT 626


>gi|73541801|ref|YP_296321.1| ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
 gi|72119214|gb|AAZ61477.1| Ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
          Length = 828

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/657 (24%), Positives = 272/657 (41%), Gaps = 81/657 (12%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--F 351
           + +  ++L ++Y         +       RVA  LA  ETE + R       L +    F
Sbjct: 15  QEISTEVLLEKYAK----GEEQSVTDVRKRVARALAQAETEDQ-REGWTARFLWAQESGF 69

Query: 352 MCSTPTLFNSGT-RHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGND 403
           + +      +GT     L +CF+  V D +         I+ A+ + A   +  GG+G D
Sbjct: 70  VPAGRINSAAGTGIQATLINCFVQPVGDSVSEPRGGRPSIYTAVAQAAETMRRGGGVGYD 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+
Sbjct: 130 FSAIRPAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D+    + N +  + D FM+ V ++         EV  +H+       IA  
Sbjct: 190 HAK-----DKGDLSNFNISIGVTDEFMRAVERDE--------EVELVHEAEPGADLIAGG 236

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y R        V+R++ A  LW +++   ++   P I F    N  +   +   + ++N
Sbjct: 237 AYRRDDG---QWVYRRMPARLLWDQVMHATYDHAEPGILFLSRINADNNLYYCETIEATN 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         C LGSI+L          ++ FD+D  A  +R + R+LDNV+D+
Sbjct: 294 PCAEQPLPP----YGCCCLGSIDLTRFVRQPFTPDSDFDFDAFAEVVRVSTRMLDNVLDV 349

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + + +      R +GLG +G  SAL +L + Y S  A  +A    E +   A  AS
Sbjct: 350 TFWPLPEQQAEAQAKRRVGLGFLGLGSALVMLGLRYDSEPARVVAARIAERMRDEAYLAS 409

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA E+GA+  F    + Q  F                    SRLP + +++ +   G+
Sbjct: 410 TELAAEKGAFPLFDADAYLQSGF-------------------ASRLP-EPVRQAIMRNGL 449

Query: 759 RNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++IAPT TI  A     S  I+P++   Y +     D T     + +   +R   
Sbjct: 450 RNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYQRKKRMPDNTYRTYEVADHAWRR--- 506

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                     H G   ++ ++PD       TA ++  +  +      Q +ID + S  + 
Sbjct: 507 --------YRHTG--ADMNKLPDA----FVTALQMSALDHMRMLQAVQPYIDTSISKTVN 552

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS-TLKGVDGKLNAVPVTDP 931
           + E    +    +Y +AW  GLK     R  S      S ++  V     A  V DP
Sbjct: 553 VPEDYPYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLSVSVPAVAASSTATTVDDP 609


>gi|304406355|ref|ZP_07388011.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304344413|gb|EFM10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 694

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/720 (22%), Positives = 288/720 (40%), Gaps = 88/720 (12%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +V A+ +                ++ T+      Y + + RY  E V+         +F
Sbjct: 33  EEVAAKSMRFN----------SFTEQVTYMIQNDFYEDVYARYTPEQVEEIFASTHGFNF 82

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETE 334
                             Y+     Y  Y +  +     +E        VA+ L   + +
Sbjct: 83  QFS--------------SYMAASKFYTDYAMKSDDRTVYMEKYPDRVAMVALHLGEGDFD 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           K KR       +       +TPT  N+G  R  ++ SCFL  + D L  I   L     L
Sbjct: 129 KAKRLAVS---MMEQRVQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQL 185

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+  + + +RG G  I G  G ++G++P LK+  D     +Q G+RKG+   Y  
Sbjct: 186 SKIGGGVAVNLSKLRGRGEPIKGVEGAAKGIMPVLKLMEDAFSYADQMGQRKGSGAGYYN 245

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            +  DV EFLD +K   D++ R   ++    +P+ F +   QN    +F P  +   + +
Sbjct: 246 IFGWDVMEFLDSKKINADEKTRLKTLSIGLIVPNKFYELAAQNKPLVVFGPHSIHKAYGV 305

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +  + +   E Y+       +K    +SA  +  K+  +  E+G+P+I  +   N     
Sbjct: 306 HMDDMD-LDEMYDTLLADERVKKKSIMSAREMLVKIAMIQLESGYPYIMNRSNANKDHAL 364

Query: 574 QHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKL 621
           + +G +  SNLCTEI     + E               CNL S+N++     N  D  K+
Sbjct: 365 KGIGAIKMSNLCTEIFQLQETSEINDYGQSDVIRRDISCNLASMNIV-----NVMDLGKI 419

Query: 622 ASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             ++   +  L +V D+         +K+N    ++GLG M     L    I Y S EA 
Sbjct: 420 KESVHEGIEGLTSVSDMAQIANAPGIRKANEELHSVGLGAMNLNGYLAKNKIAYESEEAR 479

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRD 734
           + A      ++F+++  S+ +A++R   +  F+ S +  G +       D     A   +
Sbjct: 480 DFARTFFMMMNFYSLEKSMHIARDRGETFKGFEQSEYANGNYFDRYLSTDFRPQTARALE 539

Query: 735 ELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               M+  S   W ELK +V   G+ ++  +AIAPT +I+ I   + S+ P  +++  ++
Sbjct: 540 LFGEMHIPSPDDWAELKAQVMKHGVYHAYRLAIAPTQSISYIQNATSSVMPVVEHIETRT 599

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             +        +L                                 D    + +A+++D 
Sbjct: 600 YANSTTYYPMPYLA-------------------------------QDNYFFYKSAYQMDQ 628

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I+  +   + IDQ  S  L+++   + ++L   Y  A   GLK+ YY R+   +  E
Sbjct: 629 FKVIDMIAEISQHIDQGISTVLHVNSDVTTRELSRYYIYAAKKGLKSLYYTRTNRLSVEE 688


>gi|332285600|ref|YP_004417511.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
 gi|330429553|gb|AEC20887.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
          Length = 949

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/664 (23%), Positives = 273/664 (41%), Gaps = 80/664 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTP 356
           ++L ++Y            Q    RVA  LA  E  K +   A EF   + +  F+ +  
Sbjct: 20  EVLIEKYAKGDESDIG---QVR-ARVAEALARVEPAKLRKQYAQEFLWAMENG-FIPAGR 74

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVR 408
               +GT     L +CF+  V D +        GI+ AL + A   +  GG+G +++ +R
Sbjct: 75  VNSAAGTDLQSTLINCFVQPVGDSITEEVDGKPGIYTALAQAAETMRRGGGVGYNFSGIR 134

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT   + G I +++V + +   V   G R+GA  A L   H D+ EF+  ++ 
Sbjct: 135 PRGARVKGTGSSASGPISYMRVFDRSCETVESAGSRRGAQMAVLNVTHPDIMEFITAKQE 194

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    + ++ N +  + D FM+ V  +  + L    E     +L G         Y R 
Sbjct: 195 RG----QLNNFNVSVGVSDAFMQAVETDGLFEL--SHEAEPTEELKGS------GAYLRD 242

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++ + A  +W  ++   +    P + + D  N  +   +   + S+N C E 
Sbjct: 243 DG---LWVYKAVQAREIWDLIMQSTYAAAEPGVLYMDRINQENNLAYCEKIESTNPCGEQ 299

Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L     +   C LGS+NL A+  +       FD++K+    + AVR+LDNV+      +
Sbjct: 300 PLP----DYGCCCLGSLNLTAYVTSPFSATAAFDFEKMKQATKLAVRMLDNVLIATKWPL 355

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ +      R +GLG  G    L +L + Y S +  ++A +    +   A  ASV LAQ
Sbjct: 356 DEQRLEAENKRRLGLGFTGLGDTLIMLGLRYDSEQGRQLAADFARHMRDAAYEASVALAQ 415

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+   +   +    F                     RLP DELK+ ++  G+RNS+ 
Sbjct: 416 ERGAFPLLQADEYLNSEF-------------------AQRLP-DELKQAIRQHGIRNSHL 455

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            +IAPT TI+       S  I+P++   Y ++    D +  + + V +   R        
Sbjct: 456 TSIAPTGTISLAFADNASNGIEPAFSWFYKRTKRMADGSKKD-YTVEDHAYR-------- 506

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                +    G+I  +PD       +A EI  +  +   +    ++D A S  + +    
Sbjct: 507 ----VYRAMGGDIGALPDA----FVSALEISAIDHMLMVASVAPYVDAAISKTVNVPADY 558

Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST-LKGVDGKLNAVPVTDPNSSTHSLG 939
                  +Y QAW  GLK     R  +      S   +  DG    + +++ +       
Sbjct: 559 PYDDFKDLYMQAWHKGLKGITTYRPNNILGAVLSVPGESQDGAPQPITLSEQDKRLVLTE 618

Query: 940 IPSS 943
           +  S
Sbjct: 619 VAKS 622


>gi|171060924|ref|YP_001793273.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
 gi|170778369|gb|ACB36508.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
          Length = 1007

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/663 (24%), Positives = 259/663 (39%), Gaps = 77/663 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCS 354
           +  ++L ++Y    + S IE  Q    RVA  LA  E  + +    E +       F+ +
Sbjct: 36  ISAEVLIEKYA-KGDESSIE--QVR-RRVAAALASVEAPEARELWTERFLAAQERGFVPA 91

Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTP 406
                 +GT     L +CF+  V D +        GI+ AL E A   +  GG+G D++ 
Sbjct: 92  GRIASAAGTTLSATLINCFVQPVGDSIAEPEEGFPGIYTALTEAAETMRRGGGVGYDFSR 151

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +  T   + G + +++V + +   V   G R+GA    L   H DVE F+  +
Sbjct: 152 IRPYGAWVGSTQSHASGPVSYMRVFDRSCETVESAGSRRGAQMGVLRCDHPDVEAFIHAK 211

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D+    + N +  + D+FMK V  +    L    E  +     G           
Sbjct: 212 -----DKGDLKNFNISVGVTDVFMKAVEADTDVDLVHKAEPGEKQKAAGA---------- 256

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           RQ   G + V+R + A  LW +++   ++   P + F D  N  +   +   + ++N C 
Sbjct: 257 RQRADG-LWVYRSVRARDLWDQIMRSTYDHAEPGVLFLDRINQDNNLSYCETIAATNPCA 315

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         C LGS++L         ++  FD    A    TA R+LDNV+D    
Sbjct: 316 EQPLPP----YGCCCLGSVDLTHFVQRPFESDASFDDAAFAEVCATATRMLDNVLDATVW 371

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +   ++     R +GLG  G   AL +L + Y +P A  +A    E +   A  AS +L
Sbjct: 372 PLPAQQQEAANKRRVGLGFTGLGDALIMLGLRYDTPAARAMATHISEVMRDAAYIASSDL 431

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           AQERGA+  F   L+  G                   +  SRLP   +K+ ++  G+RNS
Sbjct: 432 AQERGAFPLFNADLYLSGN------------------SFASRLP-AAVKEHIRVNGLRNS 472

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + ++IAPT TI+       S  I+P +   Y +     D T    F V +   R L+   
Sbjct: 473 HLLSIAPTGTISLAFADNASNGIEPPFSWTYTRKKREADGTFKE-FAVEDHAWR-LYRHL 530

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
             +D    D                  TA E+         +     ID + S  + +  
Sbjct: 531 KGADAPLTDA---------------FVTALEMSAEAHESMVAAVAPCIDTSISKTVNVPA 575

Query: 880 PS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
               +    +Y  AW  GLK     R  S      S    V           P +   SL
Sbjct: 576 DYPYEDFQGLYMAAWKSGLKGLATYRPNSVLGSVLSVTPTVPVVAETAATPQPLTVPVSL 635

Query: 939 GIP 941
           G P
Sbjct: 636 GTP 638


>gi|296159883|ref|ZP_06842704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
 gi|295889866|gb|EFG69663.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
          Length = 858

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/643 (24%), Positives = 272/643 (42%), Gaps = 82/643 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
             L +L ++Y         +     F RVA G+A  E    + +VE    + L       
Sbjct: 27  FSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALGA 82

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 83  GRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFS 142

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 143 AIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 202

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V ++  W L    E S               + 
Sbjct: 203 KHSKG----RWNNFNVSVGVTDDFMRAVEEDQPWQLVHRAEPSPAQRA---------ADD 249

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 250 VRQREDG-LWVYSERPARAIWDRIMRSTYDIAEPGIVFISRMNEDNNLRAVETIRATNPC 308

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LDNV+
Sbjct: 309 GEQPLPA----YGCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVL 364

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +  + +   R IG+G  G    L +L + Y S E  + A    + +   A  
Sbjct: 365 DVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYDSQEGRDFAVGIAQLMRDEAYR 424

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+ERGA+  F  + + + G F                    SRLP +++K+ ++ 
Sbjct: 425 ASVELARERGAFPLFDAARYLETGTF-------------------ASRLP-EDIKQAIRR 464

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D +   SF V +   R
Sbjct: 465 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGSR-ESFDVEDYAYR 523

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E             G+++R+PD       +A E+     ++  +  Q ++D + S 
Sbjct: 524 -LYREL-----------GGDVDRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 567

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + +      +  + +Y  AW  GLK     R         S 
Sbjct: 568 TVNVPADYPFEAFESLYFDAWKNGLKGLATYRPNETLGAVLSV 610


>gi|308068542|ref|YP_003870147.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305857821|gb|ADM69609.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 694

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 163/715 (22%), Positives = 291/715 (40%), Gaps = 67/715 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E +    K+ Q+    +      +     IE        +    D   +    
Sbjct: 19  FQLEKDQEAVAEFMKEVQE-RSLKFADTAAQVLY-MIENDYYENFYNSYTADE--INDIF 74

Query: 284 DLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            + +  +F F  Y+     Y  Y +  N  ++ + + +  RVA             A   
Sbjct: 75  HITHSYNFKFPSYMAASKFYTDYAMKSNDRKVYL-EHYPDRVAAVALHLGRGNADTARLL 133

Query: 343 YNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              +       +TPT  N+G  R  +L SCFL  + D L  I   L     L+K  GG+ 
Sbjct: 134 SRSMMEQRLQPATPTFLNAGKSRRGELVSCFLLEMDDSLNSINYVLNTCMQLSKIGGGVA 193

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G  G ++G++P LK+  D     +Q G+RKG+  AY   +  DV E
Sbjct: 194 VNLSKLRARGEAIKGVEGAAKGIMPVLKLMEDGFSYADQMGQRKGSGAAYYNIFGWDVLE 253

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D+R R   ++    +P+ F K    N    +F+P  V   +  +  +    
Sbjct: 254 FLDSKKINADERVRLKTLSIGLLVPNRFYKLAQDNEPLHVFAPYSVFKAYGTHLDDM-NL 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+       +K    +SA  +  K+  +  E+G+P+I  K   N     ++VG V  
Sbjct: 313 DEMYDTLLADDRVKKKIAMSARDMLTKIAMIQLESGYPYIMNKSNANQAHALKNVGQVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNL S+N++     N  ++ K+  ++   +
Sbjct: 373 SNLCTEIFQLQETSEITDYGQQDTIRRDVSCNLASLNIV-----NVMEHGKIRESVHEGM 427

Query: 630 RVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L +V D+          K+N    ++GLG+M          I Y S EA +       
Sbjct: 428 IALTSVSDMTQVANAPGVAKANREMHSVGLGVMNLHGYFAKNKIAYESNEAKDFVRTFFM 487

Query: 689 FISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRT 741
            +++H+I  S+E+A+    ++  F+ S +  GV+       D   + A V++    +   
Sbjct: 488 TMNYHSIEKSMEIAKAAGQSFYGFEESDYATGVYFDRYLNTDYRPITARVQELFKGIYVP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           +   WD+LK  V   G+ ++  MAIAPTA+I+ I   + S+ P  + +  ++  +     
Sbjct: 548 TSADWDKLKADVMKNGLYHAYRMAIAPTASISYIQNATSSVMPIVEQIETRTYANSTTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L                                 D    + +A+++D   +++  +
Sbjct: 608 PMPYLQK-------------------------------DNLFFYKSAYQMDQFKVLDLIA 636

Query: 862 RRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             Q  +DQ  S  L+++   + ++L   Y  A   GLK+ YY R++  +  E  T
Sbjct: 637 EIQPHVDQGISTVLHVNSDVTTRQLARCYLYAAHKGLKSLYYTRTKKLSVEECLT 691


>gi|323342960|ref|ZP_08083191.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463024|gb|EFY08219.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 704

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/737 (21%), Positives = 298/737 (40%), Gaps = 77/737 (10%)

Query: 204 FSSRTLIEKEPNY-----AKVTARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYF 256
            + +    + P +       V     ++ L +  E + + +             L  +  
Sbjct: 1   MTVQNKSNQIPEWVILNNQIVDGDGNIKDLNKDKEAVRSYFLNEINKKTQFFHSLKEKLE 60

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI 314
                +  +   L +    F+ +    D+ Y+  F F  Y+G    Y+ Y L  I+  R+
Sbjct: 61  YLTTNDYYETEFLEKYT--FEQIQAVYDIAYDAKFRFPTYMGAFKFYNDYALKSIDAERV 118

Query: 315 --EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSC 371
             E  +     +A+  A  + E    A +    L +  F  +TPTL N+G +   +  SC
Sbjct: 119 FLERYEDRLSVIALYHADGDFE---LAKKLITSLIAQDFTPATPTLLNTGKKKRGEFVSC 175

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  V D L  I    +    L+K  GG+  + T +R  G  I      ++GV+   K+ 
Sbjct: 176 FLLEVDDSLNDIARVQEFAMQLSKLGGGVSINLTNLRAKGESIKDIPNVAKGVVGVAKLL 235

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           ++     +Q G+R+GA   YL  +H D+E+FL  +K   DD  R   ++    +PD  ++
Sbjct: 236 DNAFRYADQMGQRQGAGAVYLNVFHADIEDFLQTKKLNADDDVRVKTLSMGVVMPDKMIE 295

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              ++    +F P  V   + +   +  I  + +  +         RKI+   L+  +  
Sbjct: 296 LAREDKDMYVFYPHTVYKEYGIPFSDVAIKMDEWYDKLVENPNVRKRKINPRKLFDMIAQ 355

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------- 598
           +  E+G+P+I + D  N  +       +  SNLCTEI   S                   
Sbjct: 356 LQGESGYPYIMYADNVNKEN--PLADPIKFSNLCTEILQPSIVSHYGDYHRRDEDEIGLD 413

Query: 599 -VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNL S ++     NN      +  T+  A+ ++++V +  N   +    ++N   R++
Sbjct: 414 ISCNLASGHMGNMIKNNS-----IKETVFAAMEIMNSVSEKTNIAHVPAVARANRIMRSV 468

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           G G+MG    +    I Y S E +++ D     I+++++  S+E A+E    +  F+ S 
Sbjct: 469 GFGVMGHHGYIAENFIAYGSEEDIDLIDVFFSLINYYSLVHSMEKAKETGEKFYGFERSS 528

Query: 716 WDQGVFPIDSIGLLAE---VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +  G +  D   +L +   V+  LA +   +   W +LK+ V   G+ NSN +A+AP  +
Sbjct: 529 YADGSYFNDRGQVLPKTEVVKGLLADVEIPTDEDWAQLKEDVMAYGLYNSNRLAVAPNGS 588

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           IA +   + S+ P  Q +  ++  +                                   
Sbjct: 589 IAYVMSATPSLTPIKQVVEERTYGNSKTYFPMP--------------------------- 621

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYR 890
                  D    ++ +A+++D   +I+  +  QK +DQ  S  L +    + + L   Y 
Sbjct: 622 -----AADVAGFMYESAYQMDKYKIIDVIATAQKHVDQGISFELCITSDETTRSLQRYYL 676

Query: 891 QAWLMGLKTTYYLRSRS 907
            A   G+KT YY R++ 
Sbjct: 677 YAHYQGIKTLYYTRTQK 693


>gi|237651588|ref|YP_002899058.1| putative ribonucleoside-diphosphate redutase [Roseophage DSS3P2]
 gi|220898058|gb|ACL81316.1| putative ribonucleoside-diphosphate redutase [Silicibacter phage
           DSS3phi2]
          Length = 776

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/670 (22%), Positives = 254/670 (37%), Gaps = 84/670 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQ---AFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y            Q     + R+A              E+E     FYN L  F
Sbjct: 13  QIWNQKYRFKTERDGFISDQNVVDTWGRIAQACSNLPHFHNNHAEREALEARFYNALYDF 72

Query: 350 HFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            F+ +      +GT       +   + T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KFLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ EF+  ++
Sbjct: 133 RPKGALVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVTAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V  ++ W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVAADSDWDLMF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + KV++ I A  LW  +L   +    P + F D  N  +    +  + ++N C E
Sbjct: 225 -----DGKVYQTIKAKELWETILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
             L         C LGS+NL  H          + D   L  ++RT VR+LD+V++ +  
Sbjct: 280 QPLPP----YGACLLGSVNLAKHVVFPFVKGQAEIDMKALEESVRTGVRILDSVVETSLF 335

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E  +      R  GLG+ G   AL +    Y + +AV   D  M  I+  A   S+++
Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHRYGNQQAVNFTDTIMMNIAIWAYEESIQM 395

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E G                     +  E R++   +   +   + +K  +   G+RNS
Sbjct: 396 AKEMGPAPCL----------------VPLEAREKFIQSGFMQRMPEYIKDDILEWGIRNS 439

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + +++APT TI+   G  S   +P +   Y +   + D T     + +            
Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGTKRTETVYDYA---------- 489

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           +   + H G   N E I    +   ATA ++ P   I   +  QKW+D + S  + L E 
Sbjct: 490 VLKFEEHFGENDNPEAI-WWWENYMATAQDLTPSDHIVMQAVLQKWVDSSISKTVNLPED 548

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            S      +Y  A+  G K     R    T    S ++  + K     V +P        
Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLS-VETKEEKPVETKVAEPAYDGDMRV 607

Query: 940 IPSSCTSDTE 949
           +      D  
Sbjct: 608 MSRPSVIDGT 617


>gi|9629309|ref|NP_044509.1| ribonucleotide reductase subunit 1 [Human herpesvirus 2]
 gi|82013519|sp|P89462|RIR1_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP10; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|1869862|emb|CAB06725.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1142

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/648 (26%), Positives = 275/648 (42%), Gaps = 57/648 (8%)

Query: 297  GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--------AVEFYNL--- 345
                  + Y     G  +E     + R+A  LA + T   +           E +     
Sbjct: 501  SALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKFFFH 560

Query: 346  -LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             L     + STP + N GTR+   SSC+L            A    A L   +G +    
Sbjct: 561  RLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQ--------ATTNQATLRAITGNVSAIL 612

Query: 405  TPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                G+G  +   N  S G   ++P LKV +    A N+   R    C YLE WH DV  
Sbjct: 613  ARNGGIGLCMQAFNDASPGTASIMPALKVLDSLVAAHNKQSTRPTGACVYLEPWHSDVRA 672

Query: 462  FLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLY 514
             L ++    G++ +R  ++ +A W+PDLF KR+       +N  W+LF  D    L D +
Sbjct: 673  VLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLADFH 732

Query: 515  GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            G+EFE  YE+ E             I    L   ++     TG P+I FKD  N      
Sbjct: 733  GEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYD 786

Query: 575  HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
              G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++  V +++
Sbjct: 787  TQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQACVLMVN 846

Query: 634  NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             +ID       +  + N   R++G+G+ G  +A   + +   S E  ++     E +   
Sbjct: 847  IMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLESAEFRDLNTHIAEVMLLA 906

Query: 694  AISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+  S  L  +    +S FK S++  G F  +     +   +           W+ L++ 
Sbjct: 907  AMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYEG---------EWEMLRQS 957

Query: 753  VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
            +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ L+ EL++
Sbjct: 958  MMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLLLKELER 1017

Query: 813  R--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                      +  L+    S+   +  + P    +   TAF+ D   LI+  + R  ++D
Sbjct: 1018 TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELLIDLCADRAPYVD 1077

Query: 869  QAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1078 HSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1125


>gi|167947197|ref|ZP_02534271.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 438

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 225/376 (59%), Positives = 283/376 (75%), Gaps = 2/376 (0%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAV 543
           IPDLFMKRV +   WTL  P   +     +       +Y   E +A RGEIKVFR + AV
Sbjct: 1   IPDLFMKRVAEEGDWTLVLPQRGARPARPHRWLSSRPSYTACEEKAARGEIKVFRSLKAV 60

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML ML+ETGHPWITFKDPCNIR   QH GVVHSSNLCTEITL+++  E AVCNLG
Sbjct: 61  DLWRKMLGMLYETGHPWITFKDPCNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCNLG 120

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL AH   N  D  KL  T+ TA+R+LDNVID N +++ +A+ SN  HR +GLG++GF
Sbjct: 121 SVNLAAHVDENGLDIAKLERTVTTAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGILGF 180

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+   I YAS +A+  AD SME +S++AI AS ELA ERG YSS++GSLW QGV PI
Sbjct: 181 QDALYKQRIGYASEQALTFADRSMEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVLPI 240

Query: 724 DSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS+  L + R + L ++++S L WD L+++VKT GMRNSN MAIAPTATI+NI GVSQSI
Sbjct: 241 DSLQQLKQARGDYLQIDQSSSLDWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQSI 300

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNL+VKSN+SG+FTVVN +LV++LK+  LWDE MI+DLKY+DGS+  IER+P +LK
Sbjct: 301 EPTYQNLFVKSNLSGEFTVVNPYLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAELK 360

Query: 843 KIHATAFEIDPMWLIE 858
            ++ATAFEIDP WL+E
Sbjct: 361 VLYATAFEIDPRWLVE 376


>gi|315648443|ref|ZP_07901542.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
 gi|315276137|gb|EFU39483.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
          Length = 884

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/638 (22%), Positives = 260/638 (40%), Gaps = 61/638 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTR 364
            +  +  + P+  + R+A  ++  E   E +      F  +L  +  +        +G  
Sbjct: 79  KLTLTIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGAS 138

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 139 DELTLFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSS 198

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +
Sbjct: 199 GAVSWGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVEDFITVKQTMG----QVTNANLS 254

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + + FMK V ++  W L  PD     +D   + ++   E ++          ++ + A
Sbjct: 255 VCVSNDFMKAVKEDLDWELVFPDTTDPDYD---ELWDGDLEKWKNAGHSVIP--YKTVRA 309

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL
Sbjct: 310 REVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGW----GVCNL 365

Query: 603 GSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL   +     D  +++LA+T R +VR LDNVID   +  E+ + +    R +GLG 
Sbjct: 366 SAMNLSKFYDEANHDVAWEELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGT 425

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  
Sbjct: 426 MGLAELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSG 485

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  +   +  EV D                  V+  G RN   +  APT +   + G S 
Sbjct: 486 FMKNMAEVYPEVADA-----------------VREKGARNVTVITQAPTGSTGTMVGTST 528

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G          + L                H G         ++
Sbjct: 529 GIEPYFAFKYFRQSRLGFDEQFVPIAQDWL--------------DSHPG---------EE 565

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L   + TA  +     I   +  Q+W+D + S         + +    +Y  A+ +G K 
Sbjct: 566 LPDYYVTAMTLSAEDHIRVQAAIQRWVDSSISKTANCPADFTVEDTKRLYELAFDLGCKG 625

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               R  S       T K  D    AV      ++   
Sbjct: 626 VTIYRDGSRDVQVLQTEKKEDKAAEAVTAPSAETALEQ 663


>gi|91778404|ref|YP_553612.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
 gi|91691064|gb|ABE34262.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
          Length = 861

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/643 (24%), Positives = 270/643 (41%), Gaps = 82/643 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
             L +L ++Y         +     F RVA G+A  E    + +VE    + L       
Sbjct: 30  FSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALGA 85

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 86  GRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNFS 145

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 146 AIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 205

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V ++  W L    E S               + 
Sbjct: 206 KHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPAQRA---------ADD 252

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A  +W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 253 VRQREDG-LWVYSERPAREIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 311

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LDNV+
Sbjct: 312 GEQPLPA----YGCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNVL 367

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + +  + +   R IG+G  G    L +L + Y S E  + A    + +   A  
Sbjct: 368 DVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVGIAQLMRDEAYR 427

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+ERGA+  F  + + + G F                    SRLP +++K+ ++ 
Sbjct: 428 ASVELARERGAFPLFDAARYLETGTF-------------------ASRLP-EDIKQAIRR 467

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D +   SF V +   R
Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGSR-ESFDVEDYAYR 526

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E             G++ R+PD       +A E+     ++  +  Q ++D + S 
Sbjct: 527 -LYREL-----------GGDVNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 570

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + +      +  + +Y  AW  GLK     R         S 
Sbjct: 571 TVNVPADYPFEAFESLYLDAWKNGLKGLATYRPNETLGAVLSV 613


>gi|325969910|ref|YP_004246101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
 gi|324025148|gb|ADY11907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
          Length = 836

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/609 (25%), Positives = 262/609 (43%), Gaps = 64/609 (10%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
              +E+ P     RVA G+A  E ++ +     EF  LL  + F+     L  +GT    
Sbjct: 79  DKPLEIDPAQMLARVAKGIASIEKQEVRTQWETEFNWLLEDWKFVPGGRILTGAGTDQNL 138

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +C++   P D   GI  +L +   +    GG+G + + +R   +++ G NG+S G +
Sbjct: 139 TYFNCYVIPSPKDSRGGIIASLGQMTEIMSRGGGVGMNISSLRPRHSYVKGVNGRSSGSV 198

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +  + +     + QGG R+GA+   L  WH D+ +F++ ++  G    +  + N +  I
Sbjct: 199 SWGGLFSFVTGLIEQGGSRRGALMLILNVWHPDIIDFINSKREMG----KITNANISVGI 254

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++A W  + PD        Y  E++     +  +A+  ++ V++   A  +
Sbjct: 255 TDDFMEAVRKDANWDTYFPDTTD---PAYNTEWDGDINKW--KANGHKVVVYQTQKAKKI 309

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   + +  P + F D  N  S   +   + S+N C E  L        VCNLGSI
Sbjct: 310 WDAIVESAWASAEPGVFFIDRYNKMSNSWYYSTIQSTNPCGEQGLPPW----GVCNLGSI 365

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     N +  Y  L   +R AVR LDNVID   +  E+ KK   + R IGLG MG   
Sbjct: 366 NLSRFVENKKVLYKDLGRAVRAAVRFLDNVIDDTPYFFEENKKQQLSERRIGLGTMGLAD 425

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + +PY S E++   +E  +FI   + S S +LA+E+G++  F      Q  F    
Sbjct: 426 MLIKMELPYGSEESLTFIEELYKFICIESYSESSDLAKEKGSFPFFDAEKLLQSGF---- 481

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                            +   +E+  +V+  G+RN   +  APT T   +   S  I+P 
Sbjct: 482 ----------------MKQMPEEICTKVRKQGLRNVTLLTQAPTGTTGTMVNTSTGIEPY 525

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y   + ++   G         +  +K  D W       +K H G                
Sbjct: 526 YFWEWERTGRMGSN-------IERVKVYDDW-------VKAHPG---------QKKPAYF 562

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYY 902
            +A ++ P   ++  +  QKW+D + S       E + ++   +Y   + +G K  TTY 
Sbjct: 563 VSAMDLAPEGHVKVQAAIQKWVDSSISKTGNTPKEYTIEQTGKLYELLYDLGCKGGTTYR 622

Query: 903 LRSRSATSV 911
             SR    +
Sbjct: 623 DGSRDTQVL 631


>gi|76818467|ref|YP_337183.1| ribonucleotide reductase, coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
 gi|76582940|gb|ABA52414.1| Ribonucleotide reductase, Coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
          Length = 871

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 272/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 31  IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 86

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 87  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 146

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 147 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 206

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 207 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 262

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 263 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 312

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 313 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 368

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 369 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 428

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 429 VGREMRDAAYRASVELARERGAFALFDANRYLEEGTF-------------------ASRL 469

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 470 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 528

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 529 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 571

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 572 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 631

Query: 922 KLNA 925
              A
Sbjct: 632 LEEA 635


>gi|187919646|ref|YP_001888677.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
 gi|187718084|gb|ACD19307.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
          Length = 861

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/642 (24%), Positives = 268/642 (41%), Gaps = 80/642 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY--NLLSSFHFMC 353
             L +L ++Y         +     F RVA G+A  E +  + +VE    + L       
Sbjct: 30  FSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPQALRESVEALFVDNLRHGALGA 85

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 86  GRIMSAAGTGIAATLINCFVQPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFS 145

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 146 AIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEA 205

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM+ V ++  W L    E S               + 
Sbjct: 206 KHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPAQRA---------ADD 252

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N C
Sbjct: 253 VRQREDG-LWVYSERPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPC 311

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LDNV+
Sbjct: 312 GEQPLPA----YGCCNLGPLNLTRFVIDPFAQMKGRKPSFDWDGLAKRTRTQVRFLDNVL 367

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    +++    +   R IG+G  G    L +L + Y S E  + A    + +   A  
Sbjct: 368 DVTLWPLQQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIAQLMRDEAYR 427

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASVELA+ERGA+  F    + +                  A    SRLP +++K+ ++  
Sbjct: 428 ASVELARERGAFPLFDAGRYLE------------------AGTFASRLP-EDIKEAIRRD 468

Query: 757 GMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           G+RNS+ ++IAPT T++       S  I+P++   Y +  +  D     SF V +   R 
Sbjct: 469 GIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGGR-ESFDVEDYAYR- 526

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L+ E             G+  ++PD       +A E+     ++  +  Q ++D + S  
Sbjct: 527 LYREL-----------GGDTNKLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKT 571

Query: 875 LYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + +      +  + +Y  AW  GLK     R         S 
Sbjct: 572 VNVPADYPFEAFESLYFDAWKNGLKGLATYRPNETLGAVLSV 613


>gi|167838948|ref|ZP_02465725.1| ribonucleotide reductase system [Burkholderia thailandensis MSMB43]
          Length = 843

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/653 (23%), Positives = 276/653 (42%), Gaps = 82/653 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCS 354
             + +L ++Y         +     + RVA G+A  E  + +  +E   +       + +
Sbjct: 15  FSIDVLLEKYAKGDE----QTVDDIYRRVARGIAQAEPPELRDEIEARFVEHLQRGALGA 70

Query: 355 TPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWT 405
              +  +G+     L +CF+  V D         L GI+ AL + A   +  GG+G +++
Sbjct: 71  GRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFS 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ 
Sbjct: 131 AIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEA 190

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           + + G    R ++ N +  + D FM  V Q+  W L    E S      G          
Sbjct: 191 KHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAG---------- 236

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           + +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N C
Sbjct: 237 DLRRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNPC 296

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVI 636
            E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V+
Sbjct: 297 GEQPLPA----YGCCNLGPLNLTRFVIDPFAQLDGGASAFDWDALAERTRTQVRFLDDVL 352

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+    + + ++     R IG+G  G   AL +L + Y + E  + A      +   A  
Sbjct: 353 DVTLWPLLEQRREAEQKRRIGIGFTGLGDALVMLGLRYDTQEGRDFAARVGREMRDAAYR 412

Query: 697 ASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           ASVELA+ERGA++ F  S + ++G F                    SRLP D++++ ++ 
Sbjct: 413 ASVELARERGAFALFDASRYLEEGTF-------------------ASRLP-DDIQEAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +    F V +   R
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQT-FAVEDYAYR 511

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L+ E             G+++ +PD       +A ++     +   +  Q +ID + S 
Sbjct: 512 -LYREL-----------GGDVDALPDC----FVSALQMSAHDHLAMMAAVQPYIDTSISK 555

Query: 874 NLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + +         + +Y  AW  GLK     R          T +  D    A
Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEA 608


>gi|66394955|ref|YP_240947.1| ORF006 [Staphylococcus phage G1]
 gi|62636977|gb|AAX92088.1| ORF006 [Staphylococcus phage G1]
          Length = 704

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 183/721 (25%), Positives = 294/721 (40%), Gaps = 75/721 (10%)

Query: 227 KLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           KL +  E L    K  +  T      +  E      +EG   ++         ++     
Sbjct: 24  KLYKDQEALDEYLKYIEDNTRKFNSEV--ERIRVLTKEGTYDKIFDNVPDT--IIDEMTK 79

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKR 338
           L Y  +F F  ++  Q  Y+ Y             +E  +   +RVA+ L   +  K   
Sbjct: 80  LAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVALYLFQNDYVK--- 136

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    L    F  STPT  NSG     +LSSC+L  V D +  +       A  +   
Sbjct: 137 ARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNG 196

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  D T +R  GA +      S+GVI F K         +QGG R+G+   YL  +H 
Sbjct: 197 GGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHN 256

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ + L  +K    +  R   ++    IP+ FM+ V +   +  F   +++ ++  Y  E
Sbjct: 257 DILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKVYGKYLDE 316

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             I  E Y++  D   I   +   A  +   +     E+G+P++ + D  N   P +++G
Sbjct: 317 LNID-EWYDKLLDNDSIGKVKH-DAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLG 374

Query: 578 VVHSSNLCTEITLNSSSEE--------------TAVCNLGSINLLAHFANNQFDYDKLAS 623
            V  SNLCTEI+      E                VC LGS+NL+            L  
Sbjct: 375 KVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGL-----LNE 429

Query: 624 TIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           ++    R L  V DI     +   +K+N   RAIGLG M     L    I Y S EA+++
Sbjct: 430 SVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDL 489

Query: 683 ADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA---- 737
            +     I+F +I  S+ +A+E    +  F+ S +  G + +  I    + + + A    
Sbjct: 490 VNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVL 549

Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   ++  WDEL K VK  G+ N    A APT +I+ +   + SI P    +  +   
Sbjct: 550 NKVYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIENRQYG 609

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             +      +L    +              +++G                 TA++ID   
Sbjct: 610 DMETYYPMPYLSPITQ-------------FFYEG----------------ETAYKIDNKR 640

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I +++  QK  DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E  
Sbjct: 641 IINTSAVVQKHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECE 700

Query: 915 T 915
           T
Sbjct: 701 T 701


>gi|325284718|ref|YP_004264181.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
 gi|324316207|gb|ADY27321.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
          Length = 695

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/708 (24%), Positives = 296/708 (41%), Gaps = 65/708 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +V       P     H+++    E      E GV    L      +D V    +  Y   
Sbjct: 27  QVYFQEKVNPNTVFFHDLK----EKIRYMTENGVWDASL-FERYSYDEVQQVFNRAYGYK 81

Query: 291 FAF-EYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  ++G    Y  Y          +E  +    R+++  AL  +   + A+E  + L 
Sbjct: 82  FRFKSFMGAYKFYSEYATMTPDRSRWLERYED---RMSIT-ALARSSNVEEALELVHHLV 137

Query: 348 SFHFMCSTPTLFNSGTRH-PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +  F  +TPTL NSG  +  +L SCFL     D+L  I   L   A L+K  GG+G + +
Sbjct: 138 NQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLNSITKTLSFVAELSKGGGGIGVEVS 197

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  + G    ++GV+   K+ ++     +Q G+R GA   YL   H D  + L  
Sbjct: 198 NLRARGESLRGIQNVTKGVMGVAKMLDNMLRYADQAGQRPGAGAIYLSVMHADFMDVLSA 257

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D+  R   ++    IPD+FM++V        F P  +           +   E Y
Sbjct: 258 KKIASDEDSRLKTLSVGATIPDIFMQKVRSGEDIYQFYPYSIEQETGREFTSIDW-NEEY 316

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +  AD   I+  +++SA  ++  +     E+G+P++ F+   N  +P  +VG +  SNLC
Sbjct: 317 QALADNPRIRK-KRVSARRVFEDIAITQGESGYPYLLFEGNANRANPIPNVGKILMSNLC 375

Query: 586 TEITLNSSSEE---------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           +EI   +               +    S NL +           +   +  A+R+LD+V 
Sbjct: 376 SEILQPTRPSYFHPYGEEHKDRIGLDVSCNLSSLVIEQTMRSGDMGRVVGAAIRMLDDVA 435

Query: 637 -DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
              +   +   K++N   R+IGLG MG  S L    + Y S EA++  D     + +HA 
Sbjct: 436 RSTSVTEVPAVKRANDEMRSIGLGAMGLHSFLAKNELIYGSEEALDFVDTFFAAVHYHAR 495

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNR-TSRLPWDE 748
            AS+E+A++    ++ F+GS +  G +       D     AEV      +   ++  W +
Sbjct: 496 KASMEIARDTGFVFAGFEGSRYADGSYFEQYLAKDFTPKTAEVAALFEGHTLPTKEDWAQ 555

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L + ++  G+ +S  MAIAPT +I+ +   S SI P  + +  +++           L  
Sbjct: 556 LVRDIQQHGLAHSFVMAIAPTGSISYVSHASASIMPITEKVETRTSNKARTIYPMPHL-- 613

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          D +  +  A+++D   ++++ +  Q+ +D
Sbjct: 614 -----------------------------NVDTEWYYEEAYDMDMNRVLDTVATAQRHVD 644

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q  S  L++    S + L   Y QA+L G+KT YY R R  T  E  T
Sbjct: 645 QGISCTLFVPGTCSTRDLQRYYIQAYLKGVKTLYYTRMRKTTIEECLT 692


>gi|217969781|ref|YP_002355015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
 gi|217507108|gb|ACK54119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
          Length = 957

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/627 (25%), Positives = 264/627 (42%), Gaps = 75/627 (11%)

Query: 335 KEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL-------YGIF 384
           ++KRA      L +    F+ +      +GT     L +CF+  V D +        GI+
Sbjct: 59  EDKRAHWEAKFLEAQEKGFVPAGRINSAAGTTLAATLINCFVQPVGDSVTEAVDGRPGIY 118

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL + A   +  GG+G D++ +R  GA + GT   + G + +++V + +   V   G R
Sbjct: 119 TALAQAAETMRRGGGVGYDFSSIRPKGALVKGTASNASGPVSYMRVFDRSCETVESAGAR 178

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA    L   H D+EEF+   K+ GD      + N +  + D FM+ V  +    L   
Sbjct: 179 RGAQMGVLRCDHPDIEEFIHA-KDEGD----LTNFNISVGVTDPFMQAVEADGDVELVHK 233

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E ++     G         Y+R      + V+RK+ A  LW +++   ++   P I F 
Sbjct: 234 AEPTEEVKAAG--------AYQRDDG---MWVYRKVRARELWDQVMRSTYDHAEPGILFL 282

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619
           D  N  +   +   + ++N C E  L         C LGSINL     N      +FDY 
Sbjct: 283 DRMNADNNLYYCETIEATNPCAEQPLPP----YGCCCLGSINLTLFVKNPFGDKAEFDYA 338

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +  ++R+LDNV+++    + +      + R +GLG  G   AL +L   Y + EA
Sbjct: 339 GFGKVVDVSIRMLDNVLEVTHWPLAQQHAEAQSKRRVGLGFTGLGDALIMLGQRYDTAEA 398

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E A +  EF+   A  AS ELA+ERGA+  F   L+  G                   N
Sbjct: 399 REEARKISEFMRNRAYLASSELARERGAFPLFNADLYLSGG------------------N 440

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSG 797
             SRLP D +K +++  G+RNS+ ++IAPT TI+       S  I+P +   Y +     
Sbjct: 441 FASRLPAD-VKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKRMA 499

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           D T    + V +   R          L  H G  GN++++P        TA EI      
Sbjct: 500 DGTFKE-YAVEDYAWR----------LYKHLG--GNVDKLPQS----FVTALEISAQAHK 542

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +  +    ++D + S  + + E     + + +Y  AW  GLK     R  S      S  
Sbjct: 543 DMVAAVAPYVDTSISKTVNVPEDYPYAEFEDLYLTAWKAGLKGLATYRPNSVLGSVLSVT 602

Query: 917 KGVDGK-LNAVPVTDPNSSTHSLGIPS 942
              + K  + V + D N       +P+
Sbjct: 603 PTAEQKQPHDVEIADANKRLSIKNLPA 629


>gi|237509777|ref|ZP_04522492.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001982|gb|EEP51406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 844

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 271/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q   W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQGLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASVELARERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|218289142|ref|ZP_03493378.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240725|gb|EED07904.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 574

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 240/483 (49%), Gaps = 19/483 (3%)

Query: 122 REERSDVRAAQSHSKSD--APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           R  + ++R+ ++    +          +   DG +   +  ++   +   C   +    +
Sbjct: 14  RTGQDELRSGRAIHTLEDWRDRVKTFTVEKRDGRIEPLSLDKIFAFLRRGCEAAEGCDPE 73

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238
            + ++ +  + DG+  S++    I ++       EP +  V AR LL    ++       
Sbjct: 74  RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLLDAYKQA-----S 128

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
           + +   H      Y +        G     + E   + ++  LA  +K ERD    Y+GL
Sbjct: 129 RNRGYRHLGYGDFY-QLIVELERIGRYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGL 187

Query: 299 QILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           + L DRY +  ++   +E+PQ  FM V+M LA+KE +K   A  FY++LS+     +TPT
Sbjct: 188 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 247

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+     QLSSCF+    DDL  I+   +  A ++K+ GG+G     +R  G+ I   
Sbjct: 248 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 307

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S GV+P+++  N+TAV+ NQ G R GA   YL+ WH D+ +FL LR N GD+R + H
Sbjct: 308 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 367

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRG 532
           D+     IPDLFM+RV +   W LF P EV       L D +G+EFE  YE      +  
Sbjct: 368 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 427

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +    +I A+ + ++++   FETG P+I F+D  N  +P +H G+V+ SNLCTEI  N 
Sbjct: 428 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 483

Query: 593 SSE 595
           S  
Sbjct: 484 SPS 486



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 29/238 (12%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +++K   V KR+G +      KI   + +   A EG             + L      +L
Sbjct: 34  DRVKTFTVEKRDGRIEPLSLDKIFAFLRRGCEAAEGCDP----------ERLAADVWPQL 83

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQS-GHHKITREYVL---YREERSDVRAAQSHSKSD- 138
               +++ I  +  IQ  VE + +   G   +    +L   Y+ + S  R  +     D 
Sbjct: 84  RDGMRTSEIARV-AIQAAVEKTSVAEPGWQFVAARLLLLDAYK-QASRNRGYRHLGYGDF 141

Query: 139 APIAPKLKIMMDDGT--LISFNSKRLEMIVE----EACSGLQDVSSKIVLSE-TYKNMYD 191
             +  +L+ +   GT     ++   +  +      E    L  V  K +L     +N+ +
Sbjct: 142 YQLIVELERIGRYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGLKQLLDRYAIRNLDN 201

Query: 192 GLSESDL-ETALIFSSRTLIEKEPNYAKVTARF--LLEKLRREVLTTVYKKPQKATHH 246
           G+   +L +   +  S  L  KE +      RF  +L  L+  V T      +K  H 
Sbjct: 202 GI--MELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPTLSNARKPFHQ 257


>gi|48696468|ref|YP_024510.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage K]
 gi|37729162|gb|AAO47529.1| ORF80 [Staphylococcus phage K]
 gi|119658117|gb|ABL87152.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage 812]
 gi|182627941|gb|ACB89103.1| gp ORF110 [Staphylococcus phage A5W]
          Length = 704

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 182/721 (25%), Positives = 294/721 (40%), Gaps = 75/721 (10%)

Query: 227 KLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           KL +  E L    K  +  T      +  E      +EG   ++         ++     
Sbjct: 24  KLYKDQEALDEYLKYIEDNTRKFNSEV--ERIRVLTKEGTYDKIFDNVPDT--IIDEMTK 79

Query: 285 LKYERDFAF-EYLGLQILYDRYFLHINGSR-----IEMPQAFFMRVAMGLALKETEKEKR 338
           L Y  +F F  ++  Q  Y+ Y             +E  +   +RVA+ L   +  K   
Sbjct: 80  LAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVALYLFQNDYVK--- 136

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    L    F  STPT  NSG     +LSSC+L  V D +  +       A  +   
Sbjct: 137 ARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNG 196

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  D T +R  GA +      S+GVI F K         +QGG R+G+   YL  +H 
Sbjct: 197 GGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHN 256

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ + L  +K    +  R   ++    IP+ FM+ V +   +  F   +++ ++  Y  E
Sbjct: 257 DILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTFDTYDINKMYGKYLDE 316

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
             I  E Y++  +   I   +   A  +   +     E+G+P++ + D  N   P +++G
Sbjct: 317 LNID-EWYDKLLNNDSIGKVKH-DAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKNLG 374

Query: 578 VVHSSNLCTEITLNSSSEE--------------TAVCNLGSINLLAHFANNQFDYDKLAS 623
            V  SNLCTEI+      E                VC LGS+NL+            L  
Sbjct: 375 KVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGL-----LNE 429

Query: 624 TIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           ++    R L  V DI     +   +K+N   RAIGLG M     L    I Y S EA+++
Sbjct: 430 SVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREALDL 489

Query: 683 ADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA---- 737
            +     I+F +I  S+ +A+E    +  F+ S +  G + +  I    + + + A    
Sbjct: 490 VNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKKVL 549

Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   ++  WDEL K VK  G+ N    A APT +I+ +   + SI P    +  +   
Sbjct: 550 DKVYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIENRQYG 609

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             +      +L    +              +++G                 TA++ID   
Sbjct: 610 DMETYYPMPYLSPITQ-------------FFYEG----------------ETAYKIDNKR 640

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I +++  QK  DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E  
Sbjct: 641 IINTSAVVQKHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIECE 700

Query: 915 T 915
           T
Sbjct: 701 T 701


>gi|167905562|ref|ZP_02492767.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei NCTC 13177]
 gi|254185407|ref|ZP_04891995.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
 gi|184209642|gb|EDU06685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
          Length = 844

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 272/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASVELARERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|53721516|ref|YP_110501.1| ribonucleotide reductase protein [Burkholderia pseudomallei K96243]
 gi|126443851|ref|YP_001061740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134283051|ref|ZP_01769753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|167741547|ref|ZP_02414321.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 14]
 gi|167818742|ref|ZP_02450422.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 91]
 gi|167827116|ref|ZP_02458587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 9]
 gi|167848614|ref|ZP_02474122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei B7210]
 gi|167913872|ref|ZP_02500963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 112]
 gi|167921786|ref|ZP_02508877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei BCC215]
 gi|217424572|ref|ZP_03456070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|226196550|ref|ZP_03792131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254187293|ref|ZP_04893807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254198951|ref|ZP_04905369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|254264773|ref|ZP_04955638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
 gi|254296714|ref|ZP_04964168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|52211930|emb|CAH37935.1| putative ribonucleotide reductase protein [Burkholderia
           pseudomallei K96243]
 gi|126223342|gb|ABN86847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134245699|gb|EBA45791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|157806658|gb|EDO83828.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|157934975|gb|EDO90645.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169657123|gb|EDS88517.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|217392496|gb|EEC32520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|225931426|gb|EEH27432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215775|gb|EET05160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
          Length = 844

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 272/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASVELARERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|1710385|sp|P09853|RIR1_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            AltName: Full=Ribonucleotide reductase 136 kDa subunit;
            AltName: Full=Ribonucleotide reductase large subunit
 gi|330199|gb|AAA45806.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1144

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/648 (26%), Positives = 274/648 (42%), Gaps = 57/648 (8%)

Query: 297  GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--------AVEFYNL--- 345
                  + Y     G  +E     + R+A  LA + T   +           E +     
Sbjct: 503  SALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKFFFH 562

Query: 346  -LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             L     + STP + N GTR+   SSC+L            A    A L   +G +    
Sbjct: 563  RLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQ--------ATTNQATLRAITGNVSAIL 614

Query: 405  TPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                G+G  +   N  S G   ++P LKV +    A N+   R    C YLE WH DV  
Sbjct: 615  ARNGGIGLCMQAFNDASPGTASIMPALKVLDSLVAAHNKQSTRPTGACVYLEPWHSDVRA 674

Query: 462  FLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLY 514
             L ++    G++ +R  ++ +A W+PDLF KR+       +N  W+LF  D    L D +
Sbjct: 675  VLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLADFH 734

Query: 515  GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            G+EFE  YE+ E             I    L   ++     TG P+I FKD  N      
Sbjct: 735  GEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYD 788

Query: 575  HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
              G  +  SNLCTEI   SS   + VCNLGS+NL    +   FD+  L   ++  V +++
Sbjct: 789  TQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVSRRTFDFGMLRDAVQACVLMVN 848

Query: 634  NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             +ID       +  + +   R++G+G+ G  +A   + +   S E  ++     E +   
Sbjct: 849  IMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLESAEFRDLNTHIAEVMLLA 908

Query: 694  AISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+  S  L  +    +S FK S++  G F  +     +   +           W+ L++ 
Sbjct: 909  AMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYEG---------EWEMLRQS 959

Query: 753  VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
            +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ L+ EL++
Sbjct: 960  MMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLLLKELER 1019

Query: 813  R--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                      +  L+    S+   +  + P    +   TAF+ D   LI+  + R  ++D
Sbjct: 1020 TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELLIDLCADRAPYVD 1079

Query: 869  QAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1080 HSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1127


>gi|254420375|ref|ZP_05034099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
 gi|196186552|gb|EDX81528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
          Length = 753

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/662 (25%), Positives = 266/662 (40%), Gaps = 85/662 (12%)

Query: 291 FAFEY-LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEK--EKRAVEFYNLL 346
            AF+  L  +I   +Y F    G+     +A + RVA  LA  E  K   +    F   L
Sbjct: 1   MAFDSPLAGEIWNSKYRFRPHEGTGDATVEATWDRVAAALAEAEPTKTRARWRARFRETL 60

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            ++ F+ +   L  +GT     L +CF +  VPDDL GIF  L+E A+  +  GG+G D+
Sbjct: 61  DAYRFLPAGRILAGAGTGRAVTLFNCFVMGVVPDDLDGIFQHLREAAVTLQQGGGVGMDF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + VR  GA + G   ++ G + F+ V +     +   G+R+GA+   L   H D+E F+D
Sbjct: 121 STVRPSGALVRGVGAEASGPLSFMDVWDSMCRTIMSAGQRRGAMMGCLRIDHPDIEAFID 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++    D  R  + N +  +PD FM  +  +A W L    E                  
Sbjct: 181 AKR----DAVRFRNFNLSVLVPDAFMAALDADADWPLVFDGE------------------ 218

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      + R + A  LW +++   ++   P + F D  N  +   H  V+ +SN 
Sbjct: 219 -----------IRRTVRATDLWTRLMQATYDAAEPGVIFIDRVNAANNLAHCEVIAASNP 267

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C LGSINL    +     +   D  KLA   RTAVR+LDNVIDI+
Sbjct: 268 CGEQMLPP----YGACLLGSINLARLVSAPFEPDAALDEQKLADLTRTAVRMLDNVIDIS 323

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +      R +GLG+ G   AL      Y    AV +    +  I   A  AS 
Sbjct: 324 RFPLPAQEAEARAKRRLGLGVTGLADALIFCGARYGEDRAVALTGRWLGLIRREAYRASA 383

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA E+GA+  +  ++  +                       + L   E ++ +   G+R
Sbjct: 384 ELAAEKGAFPLYDPAMLQRPNL--------------------ASLD-AETRELIGLHGLR 422

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N    +IAPT T + + G  S  I+P +   Y +  M  D T     + +       +  
Sbjct: 423 NGCLTSIAPTGTTSLLAGNVSSGIEPVFAFAYTRKVMQPDGTRREEAVED-------YAL 475

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           A+   LK  D  + +             +A  + P   +   +  Q  ID + S  +   
Sbjct: 476 ALWKTLKGPDAPLDSAP------GDAFVSAQTLTPEHHLRMQAAAQAQIDSSISKTINCP 529

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           E    +    +YRQ + MG K     R  + T    S ++       A P +D +  T  
Sbjct: 530 ENIDFEAFSDVYRQGYRMGCKGLTTYRPNAITGSVLS-VESPASVPAAAPSSDVDPLTPR 588

Query: 938 LG 939
            G
Sbjct: 589 PG 590


>gi|167722571|ref|ZP_02405807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei DM98]
          Length = 844

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/664 (22%), Positives = 271/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  AS ELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASAELARERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|167565165|ref|ZP_02358081.1| ribonucleotide reductase system [Burkholderia oklahomensis EO147]
          Length = 843

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/663 (23%), Positives = 257/663 (38%), Gaps = 80/663 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--F 342
           +  E   A +     +L ++Y               + RVA G+A  E    +  +E  F
Sbjct: 4   IAPEFHLAPQQFSTDVLLEKYAKGDER----TVDDIYRRVAHGVAQAEPAALRDEIEARF 59

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
              L                +    L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  I D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAITDAFMDAVEQDLPWQLVHRAEPSPARRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G                  + V+ +  A A+W  ++   ++   P + F    N  +  +
Sbjct: 236 GDLHRR----------DDGMWVYAEKRARAIWDTIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            V  + ++N C E  L +       CNLG +NL     +           FD+D LA   
Sbjct: 286 AVETIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAQLQGGDSVFDWDALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S E  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAEQKRRIGIGFTGLGDTLVMLGLRYDSQEGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
               +   A  ASVELA+ERGA+  F    + +                  A    SRLP
Sbjct: 402 VGREMRDAAYGASVELARERGAFPLFDADRYLE------------------AGTFASRLP 443

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVN 803
            D+++  ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D     
Sbjct: 444 -DDIQDAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGGRRT 502

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            F V +   R           +   G +       D L     +A ++     +   +  
Sbjct: 503 -FAVEDYAYRLY---------RELGGDV-------DALPDYFVSALQMSAHDHLAMMAAV 545

Query: 864 QKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q ++D + S  + +         + +Y  AW  GLK     R          T +  D  
Sbjct: 546 QPYVDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPEDTL 605

Query: 923 LNA 925
             A
Sbjct: 606 TEA 608


>gi|237651505|ref|YP_002898976.1| putative ribonucleoside-diphosphate redutase [Roseophage EE36P1]
 gi|220898137|gb|ACL81394.1| putative ribonucleoside-diphosphate redutase [Sulfitobacter phage
           EE36phi1]
          Length = 776

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/670 (22%), Positives = 257/670 (38%), Gaps = 84/670 (12%)

Query: 299 QILYDRYFLHINGSRI---EMPQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y            E     + R+A        L    TE++     FYN L  F
Sbjct: 13  QIWNQKYRFKTERDGFVSDENVVDTWGRIASACSNLPHLHNNHTERDALEARFYNALYDF 72

Query: 350 HFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            F+ +      +GT       +   + T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KFLRAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ +F+  ++
Sbjct: 133 RPKGALVRGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMDFVTAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V+ ++ W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVSADSDWDLVF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + KV++ I A  LW  +L   +    P + F D  N  +    +  + ++N C E
Sbjct: 225 -----DGKVYQTIKAKELWDAILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
             L         C LGS+NL  H          + D   L  T+RT VR+LD+V++ +  
Sbjct: 280 QPLPP----YGACLLGSVNLAKHVVFPFVKGQAEIDMGMLEQTVRTGVRILDSVVETSLF 335

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E  +      R  GLG+ G   AL +    Y S +AV+  D  M  I+  A   S+++
Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHKYGSEQAVDFTDTIMMNIAIWAYEESIKM 395

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E G                     +  E R++   +   +     +K  +   G+RNS
Sbjct: 396 AKEMGPAPCL----------------VSKEAREKFIQSGFMQRMPQYIKVGILEWGIRNS 439

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + +++APT TI+   G  S   +P +   Y +   + D T     + +            
Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGTKRTETVYDYA---------- 489

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           +   + H G   N E I    +   ATA ++ P   I   +  QKW+D + S  + L E 
Sbjct: 490 VLKFEEHFGENDNPEAI-WWWENYMATAQDLTPADHIVMQAVIQKWVDSSISKTVNLPED 548

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            S      +Y  A+  G K     R    T    S ++  + K   +  + P        
Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLS-VETKEEKPIEIETSVPQYDGDMRV 607

Query: 940 IPSSCTSDTE 949
           +      D  
Sbjct: 608 MSRPSVIDGT 617


>gi|12642667|gb|AAK00339.1| ribonucleotide reductase large subunit [Bovine herpesvirus 2]
          Length = 784

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/656 (26%), Positives = 280/656 (42%), Gaps = 60/656 (9%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK-----------ETEKE 336
           ER F         L + Y   + G   E     + R+A  LA +           E    
Sbjct: 139 ERGFQ----SALKLEEFYLKRLPGDYKESVIQLYTRIAGHLACRSEGMCRVALGREGSWM 194

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
                F+N L S   + +TP + N GT      SC+L            A    A LA  
Sbjct: 195 DMFEYFFNNLYSHAIVPATPAMLNLGTTGCYTGSCYLINPQ--------AQTSQAALAAI 246

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGV---IPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +G + +      G+G  +   N    G    +P LK  +    A N+  +R   VC Y+E
Sbjct: 247 TGNVSSILAKNGGVGLCMQSLNDAQAGQNSSVPVLKALDSLVAAYNKNSRRPTGVCVYVE 306

Query: 454 TWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDE 506
            WH D+   L  R    G++ +R  ++ TA W+PDLF +R+       ++  WTLF    
Sbjct: 307 PWHSDILALLRTRGVLAGEEAQRCDNIFTALWMPDLFFERLIRYLNGDKDMHWTLFDHKT 366

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L  LYG EFE  Y   ER+       +  ++S   +   ++     TG P++ FKD 
Sbjct: 367 GGELASLYGAEFEKKYVELEREG------LGERVSIRDITYAIVRSAATTGSPFVMFKDA 420

Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            N        G  +  SNLCTEI   +    + VCNLGS+N+     +  FD+D+L S +
Sbjct: 421 VNRHYIYDTQGEAIACSNLCTEIVHPADQNMSGVCNLGSVNVAHCVVDGVFDFDRLRSAV 480

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R  V +++ +ID       + ++  +  R++G+G+ G  +A   + +   S E       
Sbjct: 481 RACVLMVNVMIDSTSLPTVQCRRGQNKLRSMGIGMQGLHTACLKMGLDMVSQEFRRTNKL 540

Query: 686 SMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             E +   A+ AS  L       +  F  S++  G F  +    +     E         
Sbjct: 541 IAEVMLLSAMQASNALCMHGAPPFREFGRSMYRNGKFHWEGFPGVTPAFPE--------- 591

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+EL++ +K  G+RNS  +A+ PT T + +  VS+S  P++ NL+ K   SG+    N 
Sbjct: 592 EWEELRRNIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPTFTNLFSKVTKSGEVLRPNV 651

Query: 805 FLVNELKQR--DLWDEAMISDLKYHDGSIGNIERIPDDLKKI--HATAFEIDPMWLIESA 860
            L+ EL++         ++  L  H  +        D+   +    TAF+ +   LI+  
Sbjct: 652 LLLKELRRTFDGPRLSKVMDSLDKHQWTPDLAIPCLDEASPLRRFKTAFDYNQEDLIDLC 711

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKK-----LDFIYRQAWLMGLKT-TYYLRSRSATS 910
           + R  ++D +QSL LY+ E +        L  +   A+  GLKT  YY + R AT+
Sbjct: 712 ADRAPYVDHSQSLTLYVTERADGTLPASMLTRLLVHAYKRGLKTGMYYCKVRKATN 767


>gi|302340448|ref|YP_003805654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637633|gb|ADK83060.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
          Length = 826

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/609 (25%), Positives = 267/609 (43%), Gaps = 63/609 (10%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
              +E  P     RVA G+A++ET+  +E+    F  LL  + F+     L  +GT    
Sbjct: 78  DKPLETTPAQMIKRVASGIAMEETKEKREEWTERFRWLLEDWRFVPGGRILTGAGTDQNL 137

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +C++   P D   GI   L     +    GG+G + T +R   A++ G NG+S G +
Sbjct: 138 TYYNCYVIPSPEDSRGGIIKTLGHMTEIMSRGGGVGINLTSLRPHHAYVKGVNGRSSGSV 197

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +  + +     + QGG R+GA+   L  WH D+ EF+  ++  G    +  + N +  I
Sbjct: 198 SWGALYSFVTGLIEQGGSRRGALMLILNVWHPDILEFISSKRQMG----QITNANISVGI 253

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FMK V ++  W L  PD     +  Y KE++  +  +  +A    + V+RK+ A  +
Sbjct: 254 TDDFMKAVKEDLDWELVFPDT---NYPGYDKEWDGDFVAW--KAAGKPVNVYRKVKAREI 308

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   + +  P I F D  N  S   +   +  +N C E  L S      VCNLG++
Sbjct: 309 WNSIIESAWASAEPGIFFVDRYNAMSNSGYYARIQCTNPCGEQGLPSW----GVCNLGAV 364

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL      N  D+D L  T+R AVR LD+VID   +  E  K+   + R +GLG MG   
Sbjct: 365 NLSRFANGNDVDWDNLGRTVRYAVRFLDDVIDNTPYFFEANKEQQLSERRVGLGTMGLAE 424

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            +  L I Y S E+    D+   FI+  A  +S + A+E+G++  F+   + +  F    
Sbjct: 425 LMIKLKIRYGSKESEAFLDKLYRFIAVEAYRSSSDTAKEKGSFPKFEAEPFLESGF---- 480

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                            +   +E+++++   G+RN   +  APT T   + G S  I+P 
Sbjct: 481 ----------------MKGMPEEIRRKIAENGIRNVTLLTQAPTGTTGTMVGTSTGIEPY 524

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y   + +    G            +++  ++DE   ++ +             + L    
Sbjct: 525 YFWEWERRGRMGSN----------IERVGVYDEWRKANPEA------------EQLPDYF 562

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK--TTYY 902
            +A ++ P   ++  +  Q+W+D + S      ++ S ++   +Y   + +G K  T Y 
Sbjct: 563 VSAMDLSPEEHVKVQASIQRWVDSSISKTCNVPNQYSVEQTKQLYELMYDLGCKGGTIYR 622

Query: 903 LRSRSATSV 911
             SR    +
Sbjct: 623 DGSRDEQVL 631


>gi|126457217|ref|YP_001074685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242311219|ref|ZP_04810236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
 gi|126230985|gb|ABN94398.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242134458|gb|EES20861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
          Length = 844

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 271/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASVELALERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|167897188|ref|ZP_02484590.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 7894]
          Length = 844

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 272/664 (40%), Gaps = 82/664 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  E  FA +   + +L ++Y               + RVA G+A  E  + +  +E   
Sbjct: 4   IATEFHFAAQQFSIDVLLEKYAK----GEERTVDDIYRRVARGVAQAEPPELRDEIEARF 59

Query: 345 LLSSFHF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYGIFGALQENAMLA 394
           +       + +   +  +G+     L +CF+  V D         L GI+ AL + A   
Sbjct: 60  VEHLQRGALGAGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETM 119

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G +++ +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+ 
Sbjct: 120 RRGGGVGYNFSAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDC 179

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF++ + + G    R ++ N +  + D FM  V Q+  W L    E S      
Sbjct: 180 DHPDLLEFIEAKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAA 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G          + +     + V+ +  A A+W K++   ++   P + F    N  +  +
Sbjct: 236 G----------DLRRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLR 285

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTI 625
            +  + ++N C E  L +       CNLG +NL     +           FD+  LA   
Sbjct: 286 AIESIRATNPCGEQPLPA----YGCCNLGPLNLTRFAIDPFAELTGGESAFDWRALAERT 341

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+    + + +      R IG+G  G    L +L + Y S +  + A  
Sbjct: 342 RTQVRFLDDVLDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAAR 401

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRL 744
               +   A  ASVELA+ERGA++ F  + + ++G F                    SRL
Sbjct: 402 VGREMRDAAYRASVELARERGAFALFDANRYLEEGTF-------------------ASRL 442

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVV 802
           P +++++ ++  G+RNS+ ++IAPT T++       S  I+P++   Y ++ +  D +  
Sbjct: 443 P-EDIREAIRRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGSRQ 501

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             F V +   R           +   G +G        L     +A ++     +   + 
Sbjct: 502 T-FAVEDYAYRLY---------RELGGDVGA-------LPACFVSALQMSAHDHLAMMAA 544

Query: 863 RQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q +ID + S  + +         + +Y  AW  GLK     R          T +  D 
Sbjct: 545 VQPYIDTSISKTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDA 604

Query: 922 KLNA 925
              A
Sbjct: 605 LEEA 608


>gi|304407150|ref|ZP_07388804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
 gi|304344137|gb|EFM09977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
          Length = 875

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/622 (21%), Positives = 252/622 (40%), Gaps = 60/622 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            +  +  + P+  + R+A  +A  E E+++      F  +L  +  +        +G   
Sbjct: 79  KLTLTVEKTPEEMWDRLAGAMASVEKEEKRKEWTERFRYILDDWKLVPGGRIAAGAGASE 138

Query: 366 P-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G
Sbjct: 139 ELTLFNCYVIPSPKDSRGGIMETLTEMTEIMARGGGVGINLSSLRPRRAIVAGVNGSSSG 198

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            + +  + + T   + QGG R+GA+   +  WH D+ +F+ +++  G    +  + N + 
Sbjct: 199 AVSWGGLFSYTTGLIEQGGSRRGALMLMINDWHPDLLDFITVKQTMG----QVTNANLSV 254

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + + FMK V ++  W L  PD  +  +D   + ++   E +           ++ + A 
Sbjct: 255 CVSNGFMKAVKEDLDWELVFPDTKATGYD---QLWDGDLEKWRSNGHPVIP--YKTVRAR 309

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +W  ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL 
Sbjct: 310 DVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPAW----GVCNLS 365

Query: 604 SINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           +INL   +       D+++L    R +VR LDNVID   +   + + +    R +GLG M
Sbjct: 366 AINLSKFYDEGKDDVDWNELGRVTRWSVRFLDNVIDKTPYHFPENEANQQNERRVGLGTM 425

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    +  L I Y SPE++   D+   FI+  +  AS E+A E+G++ +F+   + Q  F
Sbjct: 426 GLAELMIKLGIRYGSPESLSFLDKLYGFIARESYLASSEIASEKGSFPAFEAEPYLQSGF 485

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             + +    EV D                  +   G+RN   +  APT +   + G S  
Sbjct: 486 MQNMVEEYPEVGDA-----------------IMKSGVRNVTVLTQAPTGSTGTMVGTSTG 528

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P +   Y + +  G    +                     +  H G          +L
Sbjct: 529 IEPYFAFEYFRQSRLGFDKQLVPIAQE--------------WIDAHPG---------QEL 565

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
              + T+  +     I   +  Q+W+D + S         + ++   +Y  A+ +G K  
Sbjct: 566 PDYYVTSMSLSAKDHIRVQAAIQRWVDSSISKTANAPNDFTVEETKELYELAFDLGCKGV 625

Query: 901 YYLRSRSATSVEKSTLKGVDGK 922
              R  S      ST    + K
Sbjct: 626 TIYRDGSRDVQVLSTSSKDEKK 647


>gi|117620070|ref|YP_855408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561477|gb|ABK38425.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 715

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/676 (23%), Positives = 271/676 (40%), Gaps = 75/676 (11%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH------INGSRIEMPQAFFMRVAMGLALKET 333
             A+ L   +D +FE     I   +Y L       I+G+  E  Q    RVA+ LA +E+
Sbjct: 11  ESASRLIPLQDTSFE-----IWDSKYRLKSKDGVPIDGTIDETCQ----RVALALAGQES 61

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQ 388
           + +     F   L +     +     N+G          ++     T+ D +  I G + 
Sbjct: 62  QPDVWYEPFLWALRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVH 120

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  +  K   G+G D++ +R  GA + G    + G + F+ + +     V+  G R+GA 
Sbjct: 121 EAGLTLKAGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQ 180

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              ++  H DV EF+  ++  G    R    N +  I + F+K V ++A W L  P    
Sbjct: 181 MGTMDIRHPDVVEFIQAKREDG----RLRQFNLSLLITEEFVKAVKEDAPWQLIFPYTAR 236

Query: 509 DLH------DLYGKEFEIAYENYERQADR----GEIKVFRKISAVALWRKMLTMLFETGH 558
           ++       D   + F   + N E            KV++ + A  LW  ++T  ++   
Sbjct: 237 EVEQDGITLDDPTQVFWADWPNREGVVFNELGQVACKVYKTLPARKLWNVIMTSTYDYAE 296

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P     D  N  +       + ++N C E  L         C LGS+NL     +     
Sbjct: 297 PGFILIDKVNQMNNNWFCEEIRATNPCGEQPLPP----YGACLLGSVNLTRFVRDPFAEQ 352

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+      +    R+LDNV++IN   + + ++   + R  G+G +G  SAL +L I 
Sbjct: 353 AAFDWSAFRKVVAIFTRMLDNVVEINQLPLARQREEIISKRRHGMGFLGLGSALTMLRIK 412

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSI 726
           Y S  AV   ++  + ++      S+ LA+E+G     +      G           D I
Sbjct: 413 YGSAAAVAFTEQVSQELAMTGWRESLALAKEKGPAPIMEQEFEVTGKLLRLRPEMAADGI 472

Query: 727 GLLAEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GV 778
            L  +V+ ++   R SR           L   +  +G R ++  +IAPT TI+       
Sbjct: 473 KLGDKVKGKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNA 532

Query: 779 SQSIDPSYQNLYVKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           S  I+PS+ + Y ++ +         V+ +    L  R+L + A +   +          
Sbjct: 533 SNGIEPSFAHHYSRNVIKPGKKSKESVDVYSYELLAYRELVNPAAMPYAEDEA------T 586

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAW 893
           R+PD       TA +I P   ++  +  Q+WID + S   N+  D P  ++   IY  A 
Sbjct: 587 RLPD----YFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFP-FEQFKDIYLYAS 641

Query: 894 LMGLKTTYYLRSRSAT 909
             GLK     R   A 
Sbjct: 642 DSGLKGCTTFRFNPAA 657


>gi|89900981|ref|YP_523452.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89345718|gb|ABD69921.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 969

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 162/627 (25%), Positives = 260/627 (41%), Gaps = 76/627 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH-FMCSTPT 357
           ++L ++Y      + +++ Q    RVA  LA  E  ++++  E   L +  + F+ +   
Sbjct: 23  EVLIEKYSKGSEKTIVDVNQ----RVAHALAQVEAPEQQKQWETKFLQALQNGFLPAGRI 78

Query: 358 LFNSGTRHP-QLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              +GT     L +CF+  V D +        GI+ AL E A   +  GG+G D++ +R 
Sbjct: 79  QSAAGTDLAATLINCFVQPVGDSIAHVEDGHPGIYTALTEAAETMRRGGGVGYDFSRIRP 138

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +  T   + G + +++V + +   V   G R+GA    L   H D+EEF+   K+T
Sbjct: 139 RGAWVGSTQSSASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHA-KDT 197

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GD      + N +  I D FM+ V ++A + L    E        G              
Sbjct: 198 GD----LKNFNISVGITDTFMQAVQKDAAFALVHRAEPGPAQKEAGAHH----------V 243

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
               I V+R + A  LW +++   ++   P + F D  N  +   +   + S+N C E  
Sbjct: 244 TDSGIWVYRTLQARELWDQIMRSTYDHAEPGVLFLDHINRDNNLSYCETIASTNPCAEQP 303

Query: 590 LNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           L         C LGSI+L             FD        R A R+LDNV+D+    + 
Sbjct: 304 LPP----YGCCCLGSIDLTRFIKQPFEKAASFDKAAFVEVARVATRMLDNVLDVTVWPLP 359

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++   + R IGLG  G   AL +L++ Y +  A ++A +  E +   A  ASV+LAQE
Sbjct: 360 QQQEEARSKRRIGLGYTGLGDALVMLNLRYDTQAARDMARDISELMRDTAYDASVDLAQE 419

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+  F   L+  G                      SRLP   LK+RV+T G+RNS+ +
Sbjct: 420 RGAFPLFNADLYLTGQRF------------------ASRLP-PALKERVRTHGLRNSHLL 460

Query: 765 AIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           +IAPT TI+       S  I+P++   Y +     D +    + V +   R L+      
Sbjct: 461 SIAPTGTISLAFADNASNGIEPAFSWSYTRKKRMADGSFKE-YAVEDHAWR-LYRHLYGK 518

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS- 881
           D                 L     TA E+         +    +ID A S  + +     
Sbjct: 519 DTA---------------LTPAFVTALEMSAQAHEAMVAAVAPFIDTAISKTVNVPVNYP 563

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
                 +Y +AW  GLK     R  S 
Sbjct: 564 YADFQNLYMEAWQSGLKGLATYRPNSV 590


>gi|145300302|ref|YP_001143143.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853074|gb|ABO91395.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 715

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/668 (23%), Positives = 260/668 (38%), Gaps = 70/668 (10%)

Query: 288 ERDFAFEYLGLQILYDRYFLH------INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            R    +   L+I   +Y L       I+GS  E  Q    RVA  LA +E E +     
Sbjct: 14  SRLIPLQETSLEIWDSKYRLKSKDGAPIDGSIDETYQ----RVARALAEQEREPDAWYEP 69

Query: 342 FYNLLSSFHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           F   L +     +     N+G          ++     T+ D +  I G + E  +  K 
Sbjct: 70  FLWALRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKA 128

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
             G+G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H
Sbjct: 129 GCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRH 188

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----- 511
            DV EF+  ++  G    R    N +  I + F+K V ++A W+L  P    ++      
Sbjct: 189 PDVIEFIQAKREDG----RLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIG 244

Query: 512 -DLYGKEFEIAYENYERQADRG----EIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            D     F   + N E            KV++ + A  LW  ++T  ++   P     D 
Sbjct: 245 LDDPEVVFWADWPNKEGVVINALGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDK 304

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKL 621
            N  +       + ++N C E  L         C LGS+NL     +       FD+   
Sbjct: 305 VNQMNNNWFCEEIRATNPCGEQPLPP----YGACLLGSVNLTRFVRDPFTEQAAFDWQGF 360

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +    R+LDNV++IN   + K ++     R  G+G +G  S L +L I Y S  +V 
Sbjct: 361 RKVVAIFTRMLDNVVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVA 420

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRD 734
             ++  + ++      S+ LA+E+G     +      G           D I L  +V+ 
Sbjct: 421 FTEQVSQELAMTGWQESLRLAKEKGVAPIMEQEFEVTGKMLRLHPEMAADGIKLGDKVKG 480

Query: 735 ELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786
           ++   R SR           L   +  +G R ++  +IAPT TI+       S  I+PS+
Sbjct: 481 KVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSF 540

Query: 787 QNLYVKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
            + Y ++ +         V+ +    L  R+L           + G++   E     L  
Sbjct: 541 AHHYSRNVIKPGKKSKESVDVYSFELLAYREL----------VNAGAMPYSEDDASRLPG 590

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
              TA +I P   ++  +  Q+WID + S   N+  D P  ++   IY  A   GLK   
Sbjct: 591 YFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFP-FEQFKDIYMYASDSGLKGCT 649

Query: 902 YLRSRSAT 909
             R     
Sbjct: 650 TFRFNPEA 657


>gi|217076775|ref|YP_002334491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
 gi|217036628|gb|ACJ75150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
          Length = 838

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 179/688 (26%), Positives = 313/688 (45%), Gaps = 93/688 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLA------------L 330
           +K   D        +IL +RYF+   +G+ +E   +    RVA  +A            +
Sbjct: 6   IKRWLDVEPSKNAYKILSERYFIKDISGNFLENKWEDVCRRVARVVATSELVNNPQVKKM 65

Query: 331 KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGT----------------------- 363
            + +K +   E    F+ +L +  F+ ++PTLFN+G                        
Sbjct: 66  DDAKKLEIIKETEETFFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIENMTLSDYQEIY 125

Query: 364 ----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
                   LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + GT+G
Sbjct: 126 NTRNHLHMLSACFVVPVDDSINGIFEAVKEYALITKAGGGIGSNFSSLRPKGSFVAGTHG 185

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           ++ G + F+ V N     V QG KR+GA+   L   H D+EEF+   K   D  +     
Sbjct: 186 QASGPVSFMHVFNSAIGVVEQGYKRRGALMGILNINHPDIEEFITA-KENNDGEKVLKYF 244

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  IP               F   E+  L++          E+ E +    +    R 
Sbjct: 245 NISVGIP---------------FDKKELLRLYE----------EDGEIELSHPKFTEKRY 279

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  + +++    ++TG P + F    N   P      + S+N C EI L         
Sbjct: 280 IKARDIIKQIAENAWKTGDPGLAFLHEMNKYYPLYPEMKIISTNPCGEIGLAPYE----A 335

Query: 600 CNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNLGSI++     +  Q D+D L  T+R AVR LDNVID+N   +EK   +    R +GL
Sbjct: 336 CNLGSIDVAKFVTDDGQVDWDALEDTVRLAVRFLDNVIDVNVFPLEKITNAVRNSRRLGL 395

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MGF   L+ L IPY S E  + A + M F++ H    S +L +E+G++  F+ S + +
Sbjct: 396 GIMGFADLLYKLDIPYNSEEGRQFAADLMGFMALHGHDESNKLGREKGSFPLFEKSKFFK 455

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               +     +++  +++               R    G RN   + IAPT +I+NI   
Sbjct: 456 EEEFVPFAMGMSKYDEDIKKVM-----------RESKKGKRNVAVLTIAPTGSISNIADT 504

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY---HDGSIGNIE 835
           S  ++P++   YV+     D T  + F VN++ ++ L D  ++  +K      GS+ +++
Sbjct: 505 SSGLEPNFLLAYVRYMNKHDGTKESLFYVNKVLEKKL-DPKILEKIKEKLIEKGSLQDLD 563

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +P+++KK+  TA +I PM  +      Q+++D   S  + + +  + + +  IY +A  
Sbjct: 564 -VPEEIKKVFVTAMDISPMVHLLMQDAFQRYVDNNISKTINMPNNATKEDILNIYLEALK 622

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           + ++     R  S  +   ++ K V  K
Sbjct: 623 LNVRGLTIYRDGSLQTQVLTSAKHVKTK 650


>gi|261408340|ref|YP_003244581.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
 gi|261284803|gb|ACX66774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
          Length = 883

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 264/647 (40%), Gaps = 61/647 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSGTR 364
            +  +  + P+  + R+A  ++  E   E +      F  +L  +  +        +G  
Sbjct: 79  KLTLTIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGAS 138

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 139 DELTLFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSS 198

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +
Sbjct: 199 GAVSWGGLFSYTTGLIEQGGSRRGALMLMMNDWHPDVEDFITVKQTMG----QVTNANLS 254

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + + FMK V ++  W L  PD     +D   + ++   + +++   R  I  ++ + A
Sbjct: 255 VCVSNDFMKAVKEDLDWELVFPDTTDPDYD---ELWDGDLDKWKKAGRR--IIPYKTVKA 309

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL
Sbjct: 310 REVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGW----GVCNL 365

Query: 603 GSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            ++NL   +     D  +D+LA+T R +VR LDNVID   +  E+ + +    R +GLG 
Sbjct: 366 SAMNLSKFYDEANHDVAWDELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGT 425

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  
Sbjct: 426 MGLAELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSG 485

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  +   +  EV                  + V+  G RN   +  APT +   + G S 
Sbjct: 486 FMKNMAEVYPEV-----------------AEAVRKKGARNVTVITQAPTGSTGTMVGTST 528

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G          + L                H G         ++
Sbjct: 529 GIEPYFAFKYFRQSRLGFDEQFVPIAQDWL--------------DSHPG---------EE 565

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L   + TA  +     I   +  Q+W+D + S         + +    +Y  A+ +G K 
Sbjct: 566 LPDYYVTAMSLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKG 625

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               R  S       T K  D    A   +   ++        +   
Sbjct: 626 VTIYRDGSRDVQVLQTEKKEDKAAEATTASTAEAALEQSAAGQAAEE 672


>gi|237756543|ref|ZP_04585069.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691302|gb|EEP60384.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 538

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 183/510 (35%), Positives = 280/510 (54%), Gaps = 58/510 (11%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD
Sbjct: 1   IKIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPD 60

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
             M+R+ +     LF P E   L   +G+EF   Y+    +A+RGE+++++KI +   ++
Sbjct: 61  EIMRRIKEGEPIYLFDPAECRQLVTAWGEEFAKKYQECIEKAERGELQLWKKIDSRDFYK 120

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K L  L +TGHPW+TFKD  N  +P    GV++SSNLCTEI++ +S + TAVC L S+NL
Sbjct: 121 KYLFKLAKTGHPWLTFKDAHNRHNPCPKYGVINSSNLCTEISIPNSPQSTAVCTLASVNL 180

Query: 608 LAH--------------------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             H                    F ++  D+DKL  T+ T V  LDN++D N +  E+++
Sbjct: 181 ERHLKKVEREESNSNETTSHVSRFTSHVIDWDKLKDTLETMVVALDNILDKNFYPSEESR 240

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           ++    R IG+GLMGF  AL  L IPY S EAV++A E  +F+       S ELA+ERGA
Sbjct: 241 RNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAVQLAKEIAKFMRETVYRKSEELAKERGA 300

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +    +D                                         RN+  +AIA
Sbjct: 301 FPHYYEGNYDYPP-------------------------------------RRNAVLLAIA 323

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTA+I+ I G S SID  + N++ +  +SG F VVN  L+  L+++ +W+E ++  +K +
Sbjct: 324 PTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEILEKIKAN 383

Query: 828 DGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            GSI  I+ +   + K++  TA+E+ P   I+ A+  Q++IDQA S +LY++E     ++
Sbjct: 384 QGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDME 443

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            IY  AW  GLK+TYY         EK T+
Sbjct: 444 SIYMYAWEKGLKSTYYCFIDKTIKGEKYTM 473


>gi|300024266|ref|YP_003756877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526087|gb|ADJ24556.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 809

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/647 (25%), Positives = 268/647 (41%), Gaps = 91/647 (14%)

Query: 316 MPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
             +  F RVA+  A  E     +++K A  FY  ++ F F  +   L  +GT     L +
Sbjct: 33  TLEDTFRRVALAAASAEKGGKRQQQKWAGTFYEAMADFGFQPAGRILAGAGTDRNVTLFN 92

Query: 371 CF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CF L  + DDL  IF +++E A+  +  GG+G+D++ +R  GA +      + G + F+ 
Sbjct: 93  CFVLGEIADDLSSIFESVKEAALTMQSGGGIGHDFSTLRPRGAPVKSIGADASGPVSFMD 152

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V +     +   G+R+GA+ A L   H D+E F+  +     D +R  + N +  + D F
Sbjct: 153 VWDAMCRTIMSAGQRRGAMMATLRCDHPDIEAFIAAKA----DSQRLRNFNLSVLVTDAF 208

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M  V ++A W L                                 KV++ I A ALW ++
Sbjct: 209 MDAVRRDAPWDLIFS-----------------------------GKVYKTIPARALWDQI 239

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +   F+   P + F D  N  +  Q+   + ++N C E  L         C LGSINL  
Sbjct: 240 MRATFDYAEPGVIFIDRINAANNLQYCETISATNPCGEQPLPP----YGACLLGSINLAR 295

Query: 610 HFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
                       D  KL + + TAVR LDNVIDI+ + + +  +     R IGLG+ G  
Sbjct: 296 LVEEPFTATAHVDIAKLEARVATAVRFLDNVIDISRYPVPQQAQEARAKRRIGLGVTGLA 355

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL  L +PY S  A E A   M  I   A  AS  LA E+GA+  +  ++         
Sbjct: 356 DALIFLGLPYGSAAAREQAARWMAIIQNAAYRASAALAAEKGAFPLYDANVV-------- 407

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
                      L     +RL  D++++ +   G+RN    +IAPT TI+ + G  S  I+
Sbjct: 408 -----------LTRPNITRLD-DDVREAIAANGLRNGCLTSIAPTGTISLLAGNVSSGIE 455

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P +  ++ +  +S D        V +   R   D            + G+   +P+    
Sbjct: 456 PVFDFVFRRRVLS-DGGGAEEETVEDFAHRAFRD------------AFGDDAVLPEA--- 499

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
              TA  + P   +   +  Q ++D A S  +   E  S +    IY +A+  GLK    
Sbjct: 500 -FVTAETLTPSEHVAMQATLQPYVDSAISKTINCPEDISFESFRDIYIEAYDSGLKGCTT 558

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            R  + T     ++   +   N         +T + G P+  +   E
Sbjct: 559 YRPNAITG----SVLSREAPANGDADKSGKLATPASGKPAGVSVPME 601


>gi|255691403|ref|ZP_05415078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
 gi|260623049|gb|EEX45920.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
          Length = 847

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/718 (22%), Positives = 290/718 (40%), Gaps = 109/718 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKQIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E++      A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIESKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P + SD                            ++I A  LW+K++   +++  
Sbjct: 232 YLQQYPIDSSD------------------------PTFTKEIDASTLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCH------------------------TIEK 645
                 FD+D     +  A R++D++ID+                             EK
Sbjct: 324 FKPNAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMHKIDEDPENDEVKRAERVLWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  LAE                EL + +K  G RN  C+ 
Sbjct: 444 GAFEIYDNKREQNNPF----IQRLAEADP-------------ELYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAM 820
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E     ++  ++    
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKF 546

Query: 821 ISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           ++ ++ +        S   I+++        AT+ ++D +  ++   R QKW+D + S+ 
Sbjct: 547 VTWMEANGYDPSKRYSQEEIDKLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVT 606

Query: 875 LYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + L     + L + +Y +AW  G K     R  S + V  ST    + K    P   P
Sbjct: 607 INLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSDKNKKEELPPCKPP 664


>gi|308516939|emb|CBW47044.1| hypothetical host-like ribonucleoside diphosphate reductase
           [Roseovarius sp. 217 phage 1]
          Length = 776

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/630 (22%), Positives = 243/630 (38%), Gaps = 83/630 (13%)

Query: 299 QILYDRYFLHINGSRIEM---PQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y    +    E        + R+A        L     E+E     F+  L  F
Sbjct: 13  QIWNQKYRFKTDRDDFESDLSVVDTWGRIASACSNLPHLHNNHAEREALEQRFFQALYDF 72

Query: 350 HFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             + +      +GT       +   + T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KLLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ EF+  ++
Sbjct: 133 RPKGAPVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVHAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V  +  W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVANDEEWDLVF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V+  I AV LW  +L   ++   P + F D  N  +    +  + ++N C E
Sbjct: 225 -----NGVVYETIRAVELWNTILQNTYDYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C LGS+NL  H           D  +L  ++RT VR+LD+V+D +   
Sbjct: 280 QPLPP----YGACLLGSVNLAKHVFAPFTEQADVDMAELEKSVRTGVRLLDSVVDTSKFP 335

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + +K     R  GLG+ G    L +    Y S +AV+  +  M  I+  A   S+E+A
Sbjct: 336 LPEQEKEAKEKRRAGLGVTGLADLLFMTGYRYGSVQAVDCTETIMMNIAIWAYEESIEMA 395

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E G     + +                E R +   +   +   + ++  +   G+RN++
Sbjct: 396 KEMGPAPCLQTT----------------EARMKFIQSGFMQRMPEYIRDDIIQWGIRNTH 439

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            +++APT TI+   G  S   +P +   + +   + D T     + +             
Sbjct: 440 LLSVAPTGTISMYAGNVSSGGEPIFAPSFQRKVTNDDGTKRTETVYDY------------ 487

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP- 880
           + L +      +     + +    ATA +++P   I   +  QKW+D + S  + L E  
Sbjct: 488 AILLFEKHFGEDTGAAQEWMDNYLATAQDLEPQDHIVMQAVLQKWVDSSISKTVNLPENI 547

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           S +    +Y  A+  G K     R    T 
Sbjct: 548 SFEDFKAVYDMAYETGCKGCTTYRPNDVTG 577


>gi|126179941|ref|YP_001047906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
 gi|125862735|gb|ABN57924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
          Length = 548

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/613 (27%), Positives = 269/613 (43%), Gaps = 90/613 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           +L  RY L       E P   F RVA  +         R+ EF++LLS+  F+ ++PTL 
Sbjct: 10  LLEGRYLLPG-----ETPAGLFSRVADAVGG-----TARSREFFSLLSALLFLPNSPTLM 59

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+GT   QLS+CF+  + D L GIFG L   A++ +  GG G  ++ +R  G  ++G  G
Sbjct: 60  NAGTSAGQLSACFVLPMEDTLEGIFGTLGHMALIHQSGGGTGFSFSLLRPRGDAVNGVTG 119

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + F++V +    AV QGG+R+GA    L   H D+EEF+  ++  G       + 
Sbjct: 120 AATGPVSFMRVFDAATGAVRQGGRRRGANMGVLAASHPDIEEFVTAKQEGG-----LSNF 174

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + + F + +     + L +P + S                           V++ 
Sbjct: 175 NISVGVDERFFRCLATGKEYDLINPRDGS---------------------------VWKS 207

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A +LWR +      +G P + F D  N ++   H+G + ++N C E  L         
Sbjct: 208 VDAGSLWRLIAASACISGEPGVLFLDEINRQNTTPHLGRIEATNPCGEQPLYPYES---- 263

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+NL      +  D D L + +R  V  LD VID N   + + ++     R IGLG
Sbjct: 264 CNLGSVNLARCVRQHDLDEDLLITVVRCGVDFLDAVIDANRFPLPEIRERTLATRKIGLG 323

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF  AL  L IPY S EA+  A   ME I   A   S E+ +E G++ + +GS++   
Sbjct: 324 VMGFAEALIRLGIPYESEEALRFAGSLMEHIEEMARERSEEIGKEIGSFPAIEGSIFSGE 383

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                                 MRN+    IAPT +I  I G +
Sbjct: 384 --------------------------------------MRNATVTTIAPTGSIHLIAGTT 405

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P +   Y +  + G    + S LV     R    + +   ++ H G++  +  + D
Sbjct: 406 SGIEPVFSFAYDR-TIDGRPVSIVSDLVAGFLPRTAGGKDVAEHVRRH-GTVAGLP-LDD 462

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
             + +  TA EI P   +   +  QK +D A S  + L +  +  ++  ++  A  +G K
Sbjct: 463 HARDLFRTATEIAPEHHVRMQAAFQKHVDNAVSKTVNLPQSATVDEIACVFSLAHDLGCK 522

Query: 899 --TTYYLRSRSAT 909
             T Y  RSR   
Sbjct: 523 GTTVYRYRSRPDQ 535


>gi|197121783|ref|YP_002133734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
 gi|196171632|gb|ACG72605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 595

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/637 (26%), Positives = 261/637 (40%), Gaps = 78/637 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSS 348
                 L +L  RY L    G  IE P A F RVA  +A  E    +   A  F   +++
Sbjct: 3   RLGENALHVLERRYLLRDEAGQVIETPGAMFRRVAQAVAAAEAPAARSAWAERFEARMAA 62

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
              + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R
Sbjct: 63  LELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLR 122

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++ 
Sbjct: 123 PRGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLGADHPDVLEFVDAKRA 182

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G       + N +   PD       +   W L  P                        
Sbjct: 183 AG-----LENFNISVAAPDALFHAAARGGRWALRHP------------------------ 213

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V R++ A  L  ++    + +G P + F D     +P   +G   + N C E 
Sbjct: 214 ---RGGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQ 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  +
Sbjct: 271 PLLPFE----ACTLGSVNLARFERAGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAE 326

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+
Sbjct: 327 ISRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAF 386

Query: 709 SSFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             F  S     G  P                                    RN+    IA
Sbjct: 387 PGFASSAPAGAGGRP-----------------------------------RRNATVTTIA 411

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T+A I G S  I+P +   YV+  +           +    +               
Sbjct: 412 PTGTLAIIAGCSSGIEPLFALTYVRHALDDAALPEEHPALGRALRAA--GAEAALPAVRA 469

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            G    +  +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S + + 
Sbjct: 470 AGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVA 529

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             YR A+ +G K     R  S       +    +G+L
Sbjct: 530 GAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|117926763|ref|YP_867380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
 gi|117610519|gb|ABK45974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
          Length = 707

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/663 (22%), Positives = 261/663 (39%), Gaps = 59/663 (8%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK--EKRA 339
           D+  +RD   +     I   +Y L   G     +  +  F RVA  LAL E E   E+  
Sbjct: 9   DINPQRDLELQSASQDIWDRKYRLKSKGGDPVDKTIEDTFKRVARALALVEQEPLQEQWY 68

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLA 394
             F   L       +   + N+G R  +      +     TV D +  I  A+ E  +  
Sbjct: 69  QRFLWALMQGAI-PAGRIVSNAGARDHKPATSTINCTVSQTVKDSMDDILAAVHEAGLTL 127

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K   G+G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  + 
Sbjct: 128 KAGCGIGYEFSTLRPRGAFVAGAGSSTSGPLSFMDIYDAMCRTVSSAGGRRGAQMATFDI 187

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H DV +F+  ++  G    R    N +  + + FM+ V  +  W L  P    +L D  
Sbjct: 188 THPDVVDFIRAKREDG----RLRQFNLSCLVTEQFMEAVKSDMDWELVFPANHYELDD-- 241

Query: 515 GKEFEIAYENY-------ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
               EI Y ++         +      +V++ I A  LW  +++  ++   P     D  
Sbjct: 242 -PTVEIVYRHWPVTEGYKTNEQGEVACRVWKSIPARRLWDVVMSSTYDYAEPGFILIDKV 300

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLA 622
           N ++       + ++N C E  L         C LGS+NL     N      +FD+ +  
Sbjct: 301 NEQNNNWFCEDIRATNPCGEQPLPP----YGACLLGSVNLARFVKNPFTAKAEFDWARFK 356

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +    R+LDNV++I+   +          R  G+G +G  S L +L++ Y   ++VE 
Sbjct: 357 EVVAVFTRMLDNVVEIHGLPLPGQADEIAHKRRHGMGFLGLGSTLTMLNMVYGDRQSVEF 416

Query: 683 ADESMEFISFHAISASVELAQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDE 735
             +    ++       +ELA E+G            +  +  +     D I +  ++  +
Sbjct: 417 TSQVAREMALTGWEVGLELANEKGPAPVMNQMYTITEAMMAKRPEMANDGICVGDQLPGK 476

Query: 736 LAMNRTSRLPW---DELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLY 790
           + M R SR      + L+KR++T G R S+  +IAPT TI+   G   S  I+PS+ + Y
Sbjct: 477 VLMARYSRYMAKFPERLRKRIETEGSRFSHHSSIAPTGTISLSLGNNVSNGIEPSFAHKY 536

Query: 791 VKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ +         V+ F    L  R L +       +             + L      
Sbjct: 537 SRNIIREGRKTKEKVDVFSYELLAYRALVNPDADPYAEEEK----------NLLPATFLD 586

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  I+P   ++  +  Q+W+D + S  + +       +   IY  A+  GLK     R  
Sbjct: 587 SNAINPRAHVDIQAAAQEWVDSSISKTINVPTDFPYDEFKDIYLYAYEKGLKGCTTFRFN 646

Query: 907 SAT 909
              
Sbjct: 647 PEA 649


>gi|83594588|ref|YP_428340.1| ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577502|gb|ABC24053.1| Ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 786

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/647 (24%), Positives = 267/647 (41%), Gaps = 73/647 (11%)

Query: 300 ILYDRY-FLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           I  ++Y  +  +GS +E  P+  F RV  G+  ++  +          + +  +      
Sbjct: 10  IWREKYRLVDPDGSSLEQGPEDSFARVCRGIYARDPRRAVHEPLALEAMKALEWCPGGRI 69

Query: 358 LFNSGT-RHPQLSSCFL-TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
              +GT R   L +CF+   VPD + GI  AL   A+  +  GG+G D++ +R  GA + 
Sbjct: 70  HAGAGTDRRVTLINCFVNMIVPDRMDGIMEALTRAALTMQQGGGIGTDFSTLRPRGAKVR 129

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T   S G + F+++ +     +  GG R+GA+   +   H D+  F+  +   G    R
Sbjct: 130 RTGSVSSGPLSFMEIWHAMCGTIMSGGARRGAMMGTMICDHPDLPAFITAKAQAG----R 185

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +  + D FM+ V ++A W L           +   +        ER  +     
Sbjct: 186 LTNFNVSVLVTDAFMRAVDEDATWDLGFS--------VPPADPARLVAVTERNGEP--WY 235

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V+ ++SA ALW K++   ++   P + F D  N R+   +   +  +N C E  L  + +
Sbjct: 236 VYERLSARALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGEQPLPPNGD 295

Query: 596 ETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               CNLG +NL     +      +FD  +LA      VR LDNV+D++   +E   K  
Sbjct: 296 ----CNLGCVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEA 351

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +GLG+MG  +AL +L + Y SP A+      M  +   A  AS ELA ERG +  
Sbjct: 352 QAKRRLGLGIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGERGPFPL 411

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +                     RD+L      +   D+L+ ++   G+RN   + IAPT 
Sbjct: 412 YD--------------------RDQLLARPFIQELPDDLRAKIAEQGLRNGVMLTIAPTG 451

Query: 771 TIA-NICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDL 824
           T A     VS  ++P++   Y +  +  D     F V+++   +  + R L         
Sbjct: 452 TTAIYYNNVSSGLEPTFGWRYFRKVLRPDGGHDEFAVIDAGFESWCRTRGL--------- 502

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
              D +   +  +PD       TA E+     +   +  Q++ID + S  +      S  
Sbjct: 503 ---DPATAPLTGLPDS----MVTALELSVEDHLRMQAACQEFIDASISKTINCPADMSYD 555

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
               +Y+ A+ MG K     R    +    S L        A PV  
Sbjct: 556 SFAAVYKLAYEMGCKGCTTYRP---SGTRGSVLSLDATTPAAAPVQK 599


>gi|330196|gb|AAA45805.1| ribonucleotide reductase 1 [Human herpesvirus 1]
          Length = 1137

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/716 (25%), Positives = 292/716 (40%), Gaps = 79/716 (11%)

Query: 230  REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +EV        +   H     +  +    Y        L+H +        L + LKYE 
Sbjct: 449  KEVALDFGLTERLREHEAQLVILAQALDHY------DCLIHSTPHTLVERGLQSALKYE- 501

Query: 290  DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--------EKEKRAVE 341
               F           Y     G  +E     + R+A  LA + T         +E    E
Sbjct: 502  --EF-----------YLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWE 548

Query: 342  FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +      L     + STP + N GTR+   SSC+L                 A L   +
Sbjct: 549  MFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNK--------ATLRAIT 600

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        G+G  +   N    G   V+P LKV +    A N+   R    C YLE 
Sbjct: 601  SNVSAILARNGGIGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLEP 660

Query: 455  WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
            WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D  
Sbjct: 661  WHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTS 720

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              L D +G+EFE  Y++ E            +I    L   ++     TG P++ FKD  
Sbjct: 721  MSLADFHGEEFEKLYQHLEVMGFG------EQIPIQELAYGIVRSAATTGSPFVMFKDAV 774

Query: 568  NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++
Sbjct: 775  NRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQ 834

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++    
Sbjct: 835  ACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHI 894

Query: 687  MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A+  S  L  +    ++ FK S++  G F         + R            
Sbjct: 895  AEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDARPRYEG------E 945

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ 
Sbjct: 946  WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTL 1005

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERI-----PDDLKKIHATAFEIDPMWLIESA 860
            L+ EL +R    + ++  +   D    ++ +      P    +   TAF+ D   LI+  
Sbjct: 1006 LLKEL-ERTFSGKRLLEVMDSLDAKQWSVPQALPCLEPTHPLRRFKTAFDYDQKLLIDLC 1064

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
            + R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1065 ADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|324111309|gb|EGC05291.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 528

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/564 (26%), Positives = 249/564 (44%), Gaps = 65/564 (11%)

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     N
Sbjct: 1   MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYAN 60

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA  
Sbjct: 61  QLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQM 120

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  ++     +  I+ E+Y+      E    + I+A   ++++  + FE+G+P
Sbjct: 121 ALFSPYDVERVYGKPFADIAIS-EHYDELVAD-ERIRKKYINARDFFQRLAEIQFESGYP 178

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+
Sbjct: 179 YIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNI 236

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                 +  D    A T+ TAVR L  V DI+   ++   +  N    AIGLG M     
Sbjct: 237 A-----HTMDSPDFARTVETAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGY 291

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    
Sbjct: 292 LAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQY 351

Query: 726 I--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +          + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I  
Sbjct: 352 LQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINH 411

Query: 778 VSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            + SI P    + ++    +G       F+ NE                           
Sbjct: 412 ATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE--------------------------- 444

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLM 895
                  ++  A+EI    +I++ +   + +DQ  SL L + D  + + ++     AW  
Sbjct: 445 ----NLALYQDAYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRK 500

Query: 896 GLKTTYYLRSRSATSVEKSTLKGV 919
           G+KT YY+R R    +E + ++G 
Sbjct: 501 GIKTLYYIRLRQMA-LEGTEIEGC 523


>gi|54309322|ref|YP_130342.1| hypothetical protein PBPRA2142 [Photobacterium profundum SS9]
 gi|46913758|emb|CAG20540.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 716

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/659 (22%), Positives = 264/659 (40%), Gaps = 64/659 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEK--EKRAVEFYNL 345
           D A++   ++I   +Y L         E     F RVA  LA  E +K  E    EF   
Sbjct: 15  DIAYQSTSMEIWDSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74

Query: 346 LSSFHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           L +     +     N+G          ++     T+ D +  I G + E  +  K   G+
Sbjct: 75  LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ 
Sbjct: 134 GYDFSTLRPRGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL---------- 510
           +F+  ++  G    R    N +  I + F++ V  +  W+L  P    +           
Sbjct: 194 DFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDNLDLHTD 249

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             +   ++ +     E +  R   K++R + A  LW  ++T  ++   P     D  N  
Sbjct: 250 SSVMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
           +       + ++N C E  L         C LGSINL     +       FD+D     +
Sbjct: 310 NNNWFCEEIRATNPCGEQPLPP----YGACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            T  R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S  ++   ++
Sbjct: 366 ATFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLKHKYGSAASIAFTEQ 425

Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738
             + ++      ++ LA+E+GA    +         +  +     D I +  +++ ++  
Sbjct: 426 VAQELAITGWKEALSLAKEKGAAPVMEQEFTITAKMIRQRPEMADDGIKVGDKIKGKVLH 485

Query: 739 NRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            + SR          EL + + T+G R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545

Query: 791 VKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ +         VN +    L  R+L +       K    S     ++P+       T
Sbjct: 546 TRNVIVTGKKTKENVNVYSFELLAYRELVNS------KAMPYSTDEETQLPE----YFIT 595

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           A +I P   ++  +  Q+WID + S   N+  D P  +    IY  A+  GLK     R
Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFP-FEDFQDIYMNAYDKGLKGCTTFR 653


>gi|150020504|ref|YP_001305858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
 gi|149793025|gb|ABR30473.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
          Length = 833

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 179/675 (26%), Positives = 298/675 (44%), Gaps = 94/675 (13%)

Query: 296 LGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKE------------TEKEKRAVE 341
              +IL +RYF   +NG  +E        RVA  +A  E             E ++    
Sbjct: 17  NAYKILTERYFFKNLNGKFLETKWDDVCRRVARVVATAELVNNPKLSNKKLDEIKELEET 76

Query: 342 FYNLLSSFHFMCSTPTLFNSGT---------------------------RHPQLSSCFLT 374
           F+ +L +  F+ ++PTLFN+G                                LS+CF+ 
Sbjct: 77  FFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIEEMTLEDYEEIYKTRNHLHMLSACFVV 136

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D +  IF A++E A++ K  GG+G++++ +R  G+ + GT+G++ G + F+ V N  
Sbjct: 137 PIEDSIDEIFEAVKEYALITKAGGGIGSNFSNLRPKGSFVAGTHGQASGPVSFMHVYNSA 196

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP---DLFMK 491
              V QG KR+GA+   L   H D+EEF+   K   D  +     N +  IP     F+K
Sbjct: 197 IAVVEQGYKRRGALMGILNINHPDIEEFITA-KENNDGEKILKYFNISVGIPFDKKEFLK 255

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
               +   TL  P                              K  RKI A  + +++  
Sbjct: 256 IYENDEEITLTHPK----------------------------FKETRKIKARHILKRIAK 287

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             ++TG P + F    N   P      + S+N C EI L         CNLGSI++    
Sbjct: 288 NAWKTGDPGLAFLHEMNKYYPLYPEKEIISTNPCGEIGLAPYE----ACNLGSIDVSKFV 343

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            NNQ D+  L +T+R  VR LDNVID+N   +EK  K+    R +GLG+MGF   L+ L+
Sbjct: 344 ENNQIDWKALETTVRLTVRFLDNVIDVNVFPLEKITKAVKESRRLGLGIMGFADLLYKLN 403

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY S +  EIA   M FI+ H    S +L +E+G +  F+ S + +    +     +++
Sbjct: 404 VPYNSEKGREIAANLMGFIALHGHDESNKLGREKGNFPLFEKSRFFKEENFVPFAMGMSK 463

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             DE+               +    G RN   + IAPT +I+NI   S  ++P++   YV
Sbjct: 464 YDDEIKEVM-----------KEAKKGKRNVAVLTIAPTGSISNIADTSSGLEPNFLLAYV 512

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +     D      F +N++ ++ L     E +   L    GS+  ++ +P+++KK+  TA
Sbjct: 513 RYMNKHDGGKEALFYINKVLEQKLDPITLEKIKEKLI-EKGSLQELD-VPEEIKKVFVTA 570

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +I PM  +      Q+++D   S  + +    + + +  IY +A+ + ++     R  S
Sbjct: 571 MDISPMDHLLMQDAFQRYVDNNISKTINMPSNATEEDVLNIYLEAFKLNVRGLTIYRDGS 630

Query: 908 ATSVEKSTLKGVDGK 922
             +   +  K V  K
Sbjct: 631 LQTQVLTAAKHVKTK 645


>gi|290766060|gb|ADD60038.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/715 (25%), Positives = 291/715 (40%), Gaps = 77/715 (10%)

Query: 230  REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +EV        +   H     +  +    Y        L+H +        L + LKYE 
Sbjct: 449  KEVALDFGLTERLREHEAQLVILAQALDHY------DCLIHSTPHTLVERGLQSALKYE- 501

Query: 290  DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--------EKEKRAVE 341
               F           Y     G  +E     + R+A  LA + T         +E    E
Sbjct: 502  --EF-----------YLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWE 548

Query: 342  FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +      L     + STP + N GTR+   SSC+L                 A L   +
Sbjct: 549  MFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNK--------ATLRAIT 600

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        G+G  +   N    G   V+P LKV +    A N+   R    C YLE 
Sbjct: 601  SNVSAILARNGGIGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLEP 660

Query: 455  WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
            WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D  
Sbjct: 661  WHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTS 720

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              L D +G+EFE  Y++ E            +I    L   ++     TG P++ FKD  
Sbjct: 721  MSLADFHGEEFEKLYQHLEVMGFG------EQIPIQELAYGIVRSAATTGSPFVMFKDAV 774

Query: 568  NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++
Sbjct: 775  NRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQ 834

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++    
Sbjct: 835  ACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHI 894

Query: 687  MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A+  S  L  +    ++ FK S++  G F         + R            
Sbjct: 895  AEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDARPRYEG------E 945

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ 
Sbjct: 946  WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTL 1005

Query: 806  LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
            L+ EL++         ++  L     S+   +  + P    +   TAF+ D   LI+  +
Sbjct: 1006 LLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCA 1065

Query: 862  RRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1066 DRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|114318827|gb|ABI63501.1| UL39 [Human herpesvirus 1]
 gi|290766138|gb|ADD60115.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/715 (25%), Positives = 291/715 (40%), Gaps = 77/715 (10%)

Query: 230  REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +EV        +   H     +  +    Y        L+H +        L + LKYE 
Sbjct: 449  KEVALDFGLTERLREHEAQLVILAQALDHY------DCLIHSTPHTLVERGLQSALKYE- 501

Query: 290  DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--------EKEKRAVE 341
               F           Y     G  +E     + R+A  LA + T         +E    E
Sbjct: 502  --EF-----------YLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWE 548

Query: 342  FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +      L     + STP + N GTR+   SSC+L                 A L   +
Sbjct: 549  MFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNK--------ATLRAIT 600

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        G+G  +   N    G   V+P LKV +    A N+   R    C YLE 
Sbjct: 601  SNVSAILARNGGIGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLEP 660

Query: 455  WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
            WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D  
Sbjct: 661  WHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTS 720

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              L D +G+EFE  Y++ E            +I    L   ++     TG P++ FKD  
Sbjct: 721  MSLADFHGEEFEKLYQHLEVMGFG------EQIPIQELAYGIVRSAATTGSPFVMFKDAV 774

Query: 568  NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++
Sbjct: 775  NRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQ 834

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++    
Sbjct: 835  ACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHI 894

Query: 687  MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A+  S  L  +    ++ FK S++  G F         + R            
Sbjct: 895  AEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDARPRYEG------E 945

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ 
Sbjct: 946  WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTL 1005

Query: 806  LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
            L+ EL++         ++  L     S+   +  + P    +   TAF+ D   LI+  +
Sbjct: 1006 LLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCA 1065

Query: 862  RRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1066 DRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|9629420|ref|NP_044641.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|132605|sp|P08543|RIR1_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP6; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|59539|emb|CAA32314.1| ribonucleotide reductase large subunit [Human herpesvirus 1]
          Length = 1137

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/715 (25%), Positives = 291/715 (40%), Gaps = 77/715 (10%)

Query: 230  REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +EV        +   H     +  +    Y        L+H +        L + LKYE 
Sbjct: 449  KEVALDFGLTERLREHEAQLVILAQALDHY------DCLIHSTPHTLVERGLQSALKYE- 501

Query: 290  DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--------EKEKRAVE 341
               F           Y     G  +E     + R+A  LA + T         +E    E
Sbjct: 502  --EF-----------YLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWE 548

Query: 342  FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +      L     + STP + N GTR+   SSC+L                 A L   +
Sbjct: 549  MFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNK--------ATLRAIT 600

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        G+G  +   N    G   V+P LKV +    A N+   R    C YLE 
Sbjct: 601  SNVSAILARNGGIGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLEP 660

Query: 455  WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
            WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D  
Sbjct: 661  WHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTS 720

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              L D +G+EFE  Y++ E            +I    L   ++     TG P++ FKD  
Sbjct: 721  MSLADFHGEEFEKLYQHLEVMGFG------EQIPIQELAYGIVRSAATTGSPFVMFKDAV 774

Query: 568  NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++
Sbjct: 775  NRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQ 834

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++    
Sbjct: 835  ACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHI 894

Query: 687  MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A+  S  L  +    ++ FK S++  G F         + R            
Sbjct: 895  AEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDARPRYEG------E 945

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ 
Sbjct: 946  WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTL 1005

Query: 806  LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
            L+ EL++         ++  L     S+   +  + P    +   TAF+ D   LI+  +
Sbjct: 1006 LLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCA 1065

Query: 862  RRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1066 DRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|222478370|gb|ACM62262.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|225644|prf||1308225A ribonucleotide reductase
          Length = 1137

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/715 (25%), Positives = 291/715 (40%), Gaps = 77/715 (10%)

Query: 230  REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +EV        +   H     +  +    Y        L+H +        L + LKYE 
Sbjct: 449  KEVALDFGLTERLREHEAQLVILAQALDHY------DCLIHSTPHTLVERGLQSALKYE- 501

Query: 290  DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--------EKEKRAVE 341
               F           Y     G  +E     + R+A  LA + T         +E    E
Sbjct: 502  --EF-----------YLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWE 548

Query: 342  FYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
             +      L     + STP + N GTR+   SSC+L                 A L   +
Sbjct: 549  MFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNK--------ATLRAIT 600

Query: 398  GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        G+G  +   N    G   V+P LKV +    A N+   R    C YLE 
Sbjct: 601  SNVSAILARNGGIGLCVQAFNDSGPGTASVMPALKVLDSLVAAHNKESARPTGACVYLEP 660

Query: 455  WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
            WH DV   L ++    G++ +R  ++ +A W+PDLF KR+       +N  WTLF  D  
Sbjct: 661  WHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTS 720

Query: 508  SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              L D +G+EFE  Y++ E            +I    L   ++     TG P++ FKD  
Sbjct: 721  MSLADFHGEEFEKLYQHLEVMGFG------EQIPIQELAYGIVRSAATTGSPFVMFKDAV 774

Query: 568  NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   FD+ +L   ++
Sbjct: 775  NRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTFDFGRLRDAVQ 834

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              V +++ +ID       +  + N   R++G+G+ G  +A   L +   S E  ++    
Sbjct: 835  ACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAEFQDLNKHI 894

Query: 687  MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A+  S  L  +    ++ FK S++  G F         + R            
Sbjct: 895  AEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDARPRYEG------E 945

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K    G+    N+ 
Sbjct: 946  WEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTL 1005

Query: 806  LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
            L+ EL++         ++  L     S+   +  + P    +   TAF+ D   LI+  +
Sbjct: 1006 LLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCA 1065

Query: 862  RRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
             R  ++D +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 1066 DRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1120


>gi|326402358|ref|YP_004282439.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
 gi|325049219|dbj|BAJ79557.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
          Length = 761

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/638 (23%), Positives = 256/638 (40%), Gaps = 85/638 (13%)

Query: 296 LGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +  QI   +Y L    G  ++   +  + RVA  LA  E E       FY  L  F F+ 
Sbjct: 21  ISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFVP 80

Query: 354 STPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +   +  +GT R   L +CF +  + DDL  IF  L+E A+  +  GG+G D++ +R  G
Sbjct: 81  AGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPKG 140

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A + G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  ++  G 
Sbjct: 141 AAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKREPG- 199

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              R  + N +  + D FM+ V  +A W L                              
Sbjct: 200 ---RLRNFNLSVLVTDDFMRAVEADAAWDLVF---------------------------- 228

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E KV+R + A ALW  +    ++   P + F D  N R+   +   +H++N C E  L 
Sbjct: 229 -EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPLP 287

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   C LGSINL     +      + D  +LA  +  AVR+LD+ ID +   +E  
Sbjct: 288 P----YGACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEAQ 343

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++     R +GLG+ G   AL +  + Y +PEA   A +    I   A  AS  LA E+G
Sbjct: 344 REEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEKG 403

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  +  + +  G                      + L  ++++  +   G+RN+   ++
Sbjct: 404 AFPLYDAAQYLAGE-------------------TIAGLD-EDVRAAIAAHGIRNALLTSV 443

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+ +    S  ++P +   Y +  +  D +     + +               L+
Sbjct: 444 APTGTISLLSDNVSSGVEPVFALAYTRKVLQRDGSRREEEVTD-------------YALR 490

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884
                 G    +P        TA E+ P   +   +  Q+ +D A S  + + E  G + 
Sbjct: 491 LFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFED 546

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
              +Y  A+  G K     R  + T          D K
Sbjct: 547 FQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584


>gi|167572268|ref|ZP_02365142.1| ribonucleotide reductase system [Burkholderia oklahomensis C6786]
          Length = 825

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/647 (23%), Positives = 252/647 (38%), Gaps = 80/647 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTL 358
           L ++Y               + RVA G+A  E    +  +E  F   L            
Sbjct: 2   LLEKYAKGDER----TVDDIYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMS 57

Query: 359 FNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
               +    L +CF+  V D         L GI+ AL + A   +  GG+G +++ +R  
Sbjct: 58  AAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPR 117

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G
Sbjct: 118 GAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG 177

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               R ++ N +  I D FM  V Q+  W L    E S      G               
Sbjct: 178 ----RWNNFNISVAITDAFMDAVEQDLPWQLVHRAEPSPARRAAGDLHRR---------- 223

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              + V+ +  A A+W  ++   ++   P + F    N  +  + V  + ++N C E  L
Sbjct: 224 DDGMWVYAEKRARAIWDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPL 283

Query: 591 NSSSEETAVCNLGSINLLAHFANN---------QFDYDKLASTIRTAVRVLDNVIDINCH 641
            +       CNLG +NL     +           FD+D LA   RT VR LD+V+D+   
Sbjct: 284 PA----YGCCNLGPLNLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLW 339

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + +      R IG+G  G    L +L + Y S E  + A      +   A  ASVEL
Sbjct: 340 PLPEQRHEAEQKRRIGIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVEL 399

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ERGA+  F    + +                  A    SRLP D+++  ++  G+RNS
Sbjct: 400 ARERGAFPLFDADRYLE------------------AGTFASRLP-DDIQDAIRRDGIRNS 440

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + ++IAPT T++       S  I+P++   Y ++ +  D      F V +   R      
Sbjct: 441 HLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKIMADGGRRT-FAVEDYAYRLY---- 495

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                +   G +       D L     +A ++     +   +  Q ++D + S  + +  
Sbjct: 496 -----RELGGDV-------DALPDYFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPA 543

Query: 880 PS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
                  + +Y  AW  GLK     R          T +  D    A
Sbjct: 544 DYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPEDTLTEA 590


>gi|219681362|ref|YP_002456126.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
 gi|199580629|gb|ACH89016.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
          Length = 744

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 295/799 (36%), Gaps = 92/799 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +   DGT+  F+  RL    E A +    V    +  +  K  +DG + SDL+ A+I +
Sbjct: 4   NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWSEIAVDAVKRCHDGCTTSDLQWAMIEA 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +   +A +  R L+  + +E      K P     ++           + + G  
Sbjct: 62  CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYDKMR----TLNLWEDMGY- 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
                    D +L YL   + + +D  + Y  ++   D+Y +         E PQ  FM 
Sbjct: 115 --------SDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ +   + +  +    ++ Y  LS       TP L    ++    +SC +    D   
Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A      +     G+G      R  G  +       QG  P+    N    A  Q 
Sbjct: 227 SIGIAEHIAYTMTCKQAGIGILLQT-RSKGDGVRNKTIVHQGKTPYFACINTAVKANKQ- 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+          ++++ L L       +++   M+    I + F++RV ++  W L
Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            S  +  +LH      +E+    Y+R   R      + +SA  L +  L   +ETG  + 
Sbjct: 345 VSFKDAPELHKRMYGSYELFEVEYDR-VMRNPDIKKKMVSARKLSKVFLKNRYETGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------------SSEETAVCNLGSIN 606
            F D  N          + +SNLC EI L +               +  E A+C L SI 
Sbjct: 404 FFTDNMNTH--TPFEDTIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSI- 460

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                   +   ++        + ++DNV+DI  +  E  KKS    R++G+G+      
Sbjct: 461 -----VAGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHY 515

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P++  
Sbjct: 516 LASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDY 575

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPS 785
               +      ++ T +  W +L K +K   G+R+S   A  P  + +     +  + P 
Sbjct: 576 SQEVDN----IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPV 631

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            +    K +  G    +                                    + +  ++
Sbjct: 632 RELKMFKKSPQGSVFFLAPD--------------------------------SEVIGDVY 659

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899
            +A+++    +IE  +  QK+  QA S + Y+D        S K        A  +G+KT
Sbjct: 660 QSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKT 719

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+ SR    V +S+LK 
Sbjct: 720 QYYMNSR--VGVGESSLKE 736


>gi|330831086|ref|YP_004394038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
 gi|328806222|gb|AEB51421.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
          Length = 715

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/655 (22%), Positives = 255/655 (38%), Gaps = 62/655 (9%)

Query: 297 GLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            L+I   +Y L   +G+ I+      + RVA  LA +E E E     F   L +     +
Sbjct: 23  SLEIWDSKYRLKSKDGTPIDSSIDETYQRVARALAEQELEPEAWYEPFLWALRNGAI-PA 81

Query: 355 TPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
                N+G          ++     T+ D +  I G + E  +  K   G+G D++ +R 
Sbjct: 82  GRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYDFSTLRP 141

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA + G    + G + F+ + +     V+  G R+GA    ++  H DV EF+  ++  
Sbjct: 142 RGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIEFIQAKRED 201

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH------DLYGKEFEIAYE 523
           G    R    N +  I + F+K V ++A W+L  P    ++       D   +     + 
Sbjct: 202 G----RLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIALDDPAQVLWADWP 257

Query: 524 NYERQADR----GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           N E            KV++ + A  LW  ++T  ++   P     D  N  +       +
Sbjct: 258 NKEGVVFNELGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDKVNQMNNNWFCEEI 317

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDN 634
            ++N C E  L         C LGS+NL     +       FD+      +    R+LDN
Sbjct: 318 RATNPCGEQPLPP----YGACLLGSVNLTKFVRDPFTESAAFDWQAFRKVVAIFTRMLDN 373

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V++IN   + K ++     R  G+G +G  S L +L I Y S  +V   ++  + ++   
Sbjct: 374 VVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVAFTEQVSQELAMTG 433

Query: 695 ISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSRLPWD 747
              S+ LA+E+G     +      G           D I +  +V+ ++   R SR    
Sbjct: 434 WQESLRLAKEKGPAPIMEQEFEVTGKMLRLRPEMAADGIKVGDKVKGKVLHARYSRYMQQ 493

Query: 748 ------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF 799
                  L   +  +G R ++  +IAPT TI+       S  I+PS+ + Y ++ +    
Sbjct: 494 VAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIKPGK 553

Query: 800 T---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                V+ +    L  R+L + A               +     L     TA +I P   
Sbjct: 554 KSKESVDVYSFELLAYRELVNPAATP----------YADDEASRLPDYFITADDISPAQH 603

Query: 857 IESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++  +  Q WID + S   N+  D P  ++   IY  A   GLK     R     
Sbjct: 604 VDIQAAAQHWIDSSISKTANVPTDFP-FEQFKDIYMYASDSGLKGCTTFRFNPEA 657


>gi|332830258|gb|EGK02886.1| hypothetical protein HMPREF9455_01136 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 848

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/719 (22%), Positives = 286/719 (39%), Gaps = 117/719 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  FD  Y    L Y   F  + L  ++  ++Y L    G+  E  P+    R+A 
Sbjct: 1   MAQKVYTFDEAY-NAALNY---FNGDELAAKVWVNKYALKDAAGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV---PD 378
            +   E++ EK     E Y+L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIGRIESKYEKGLTNKELYDLFDHFKYIVPQGSPMTGIGNDFQIASLSNCFVIGLNGPSD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V   + 
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDGSK 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + S+                            + I A  LWRK++   +++  
Sbjct: 232 YTQQYPIDSSN------------------------PTTVKDIQATELWRKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S       +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIKESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEK 645
                 FD++  +  +  A R++D++ID                           H  EK
Sbjct: 324 FKDDAHFDFELFSKHVGLAQRIMDDIIDLETEKIDKILQKIDDDPETDEVRWPERHLWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R  G+G+      +  + + Y + EA   A+E    ++  A  +SVELA+ER
Sbjct: 384 IRTKTLQGRRTGVGITAEGDMIAAMGLRYGTEEATAFAEEVHRVLAVAAYRSSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F      +  F    I  LAEV  +             L K ++  G RN  C+ 
Sbjct: 444 GAFEIFDFKREKKNPF----INRLAEVDPQ-------------LIKDMEKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           +APT T + +   +  I+P +  +Y  +  ++ +   V    V+E    D W+E ++   
Sbjct: 487 VAPTGTTSLMTQSTSGIEPVFMPVYKRRRKVNPNDKEVRVDFVDENG--DSWEEYIVFHH 544

Query: 825 KY------------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           K+               +   +E +  +     AT+ ++D +  ++   R QKW+D + S
Sbjct: 545 KFVTWMESKGYPTSKKYTNEEVETMVAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSIS 604

Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           + + L     + L + +Y +AW  G K     R  S   V    L   D K  A    D
Sbjct: 605 VTINLPSDVSEDLVNDLYIEAWKSGCKGCTVYRDGSRAGV----LVAADNKKQADENCD 659


>gi|327198491|ref|YP_004327079.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
 gi|311875187|emb|CBX44447.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
          Length = 744

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 295/799 (36%), Gaps = 92/799 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +   DGT+  F+  RL    E A +    V    +  +  K  +DG + SDL+ A+I +
Sbjct: 4   NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWAEIAVDAVKRCHDGCTTSDLQWAMIEA 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +   +A +  R L+  + +E      K P     ++           + + G  
Sbjct: 62  CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPTLTDFYDKMR----TLNLWEDMGY- 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
                    D +L YL   + + +D  + Y  ++   D+Y +         E PQ  FM 
Sbjct: 115 --------SDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ +   + +  +    ++ Y  LS       TP L    ++    +SC +    D   
Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A      +     G+G      R  G  +       QG  P+    N    A  Q 
Sbjct: 227 SIGIAEHIAYTMTCKQAGIGILLQT-RSKGDGVRNKTIVHQGKTPYFACINTAVKANKQ- 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+          ++++ L L       +++   M+    I + F++RV ++  W L
Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            S  +  +LH      +E+    Y+R   R      + +SA  L +  L   +ETG  + 
Sbjct: 345 VSFKDAPELHKRMYGSYELFEVEYDR-VMRNPGIKKKMVSARKLSKVFLKNRYETGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------------SSEETAVCNLGSIN 606
            F D  N          + +SNLC EI L +               +  E A+C L SI 
Sbjct: 404 FFTDNMNTH--TPFEDTIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSI- 460

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                   +   ++        + ++DNV+DI  +  E  KKS    R++G+G+      
Sbjct: 461 -----VAGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHY 515

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P++  
Sbjct: 516 LASNFTNYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDY 575

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPS 785
               +      ++ T +  W +L K +K   G+R+S   A  P  + +     +  + P 
Sbjct: 576 SQEVDN----IVDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPV 631

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            +    K +  G    +                                    + +  ++
Sbjct: 632 RELKMFKKSPQGSVFFLAPD--------------------------------SEVIGDVY 659

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE------PSGKKLDFIYRQAWLMGLKT 899
            +A+++    +IE  +  QK+  QA S + Y+D        S K        A  +G+KT
Sbjct: 660 QSAWDVPEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKT 719

Query: 900 TYYLRSRSATSVEKSTLKG 918
            YY+ SR    V +S+LK 
Sbjct: 720 QYYMNSR--VGVGESSLKE 736


>gi|160903303|ref|YP_001568884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
 gi|160360947|gb|ABX32561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
          Length = 840

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 176/685 (25%), Positives = 299/685 (43%), Gaps = 99/685 (14%)

Query: 296 LGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE-------FYNLL 346
             + IL DRYFL    G+ +E        R+A  +A  E        E       FY L+
Sbjct: 15  NAITILKDRYFLKDGEGNYLESTWDEVAKRIARHVAAAEVNYTNDIEEIKNAEEHFYQLI 74

Query: 347 SSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPDD 379
            S  F+ ++PT+FN+G                           T+H  LS+CF+  + D 
Sbjct: 75  KSRIFLPNSPTIFNAGKTMDRQLFKKDIEETTLEDYKTIFDSRTKHNMLSACFVIPMDDS 134

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  IF A++  A++ KY GG+G D++ +R  G+ I GT GKS G I F+ V N  A  + 
Sbjct: 135 MSAIFDAVKNAALIMKYGGGVGYDFSVLRPKGSSIAGTGGKSSGPISFMHVFNTAASTIE 194

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI--PDLFMKRVTQNA 497
           QGG R+ A  A L   H DV +F++ +K+        +  N +  I  P  F K + ++ 
Sbjct: 195 QGGARRAAQMAVLRYDHPDVFDFINSKKDN-KGNNVLNYFNISVNIDNPKEFKKMLEEDG 253

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             TL  P                               + + I A  L  KM+   ++TG
Sbjct: 254 DLTLEHPAS----------------------------SIRKTIKANDLMNKMVENAWKTG 285

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F    N          V ++N C E  L         CNLGSI++     +    
Sbjct: 286 DPGMLFLGRHNQYYAMSEHTPVTATNPCGEEPLPPFGS----CNLGSIDVAKLVEDMDLG 341

Query: 614 --NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             N  D  +    +  AVR LD+VI+ N + +++ ++ +   R IGLG+MG   AL+   
Sbjct: 342 NPNSPDISEFQEIVYWAVRFLDDVIESNIYPLKEIEEISKKQRFIGLGMMGLADALYKKE 401

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY S +A +   +    +++ +  AS ELA+ERG +  F+ S +  G  P     L  E
Sbjct: 402 LPYNSEQARKFMAKLTAELAYFSHVASTELAKERGNFPDFQRSKYPNGFIPFPM--LDDE 459

Query: 732 VRDELAMNRTSRLPWDELKKR----VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           + +++ +       W+E  ++      T   RN     IAPT +I+N+   S  I+P++ 
Sbjct: 460 IDEDIKV-------WNEKIRQHFQGEATKYKRNVQTNTIAPTGSISNLADTSSGIEPNFL 512

Query: 788 NLYVKSNMSGDF-----TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             YV+   + +      + +N  L+ ++       E + +++    GSI NI+ IP+++K
Sbjct: 513 LSYVRYMTNKEGDRVPLSYINPILMEKIG--TNMTEELKAEII-EKGSIQNIDSIPNEIK 569

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
           KI  T+ +I P   + +    Q ++D + S  + +    + + +  IY QA  + LK   
Sbjct: 570 KIFVTSMDIPPKDHLLAQHVIQSYLDASCSKTINMPKSSTIEDVKAIYLQALELNLKGLT 629

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAV 926
             R  S  +   ++    + + +  
Sbjct: 630 IYRDGSLETQVLTSSSQEEKETSET 654


>gi|167041120|gb|ABZ05880.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine microorganism HF4000_001A02]
          Length = 817

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/691 (23%), Positives = 274/691 (39%), Gaps = 98/691 (14%)

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           K T  E+  +  E      +E      +    +  +      +  Y+ D     LG  +L
Sbjct: 13  KTTSGELNMMVEETVRELTKE------VDGQNISEEFTPYLTENYYKDD----SLGADVL 62

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK---EKRAVEFYNLLSSFHFMCSTPTL 358
            ++Y         E+ Q    R A  LA  E  K   +    +FY +L  F F      +
Sbjct: 63  KNKYLAPWENHPYELWQ----RQAKALASVERTKKLRDTWEKKFYYILEDFRFTPGGRIM 118

Query: 359 FNSGTR--HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             +G       L++C++  +  D +  I+  ++E A   KY GG G+D + +R  G  I 
Sbjct: 119 HGAGREDITTTLNNCYVVGIQDDSINSIYRTIEEEARTYKYGGGCGHDLSVLRPSGDAIK 178

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GT G+S G + F+ + ++    + Q G R+GA    L   H D+E+F++++     D   
Sbjct: 179 GTGGESCGPVGFMNLFSENTNTIAQHG-RRGANMQTLRVDHPDIEKFIEIKTG---DIHM 234

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  +   FM+ V  ++ + L   D                             +
Sbjct: 235 VKYSNISVLLTHRFMEAVENDSEFDLKWND-----------------------------Q 265

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V++ I A  LW K++     +  P + F D        ++   + S+N C E  L     
Sbjct: 266 VYKTIKARQLWNKIIEHAHTSAEPGLLFWDTMIDYHNAEYCSPLVSTNPCAEQPLP---- 321

Query: 596 ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDIN--CHTIEKAKKSNHT 652
           +   CNLGSINL         F  D+   T+  A R LDNVID N   H +E  K +   
Sbjct: 322 DGGCCNLGSINLERFVDGEGNFMIDEFKDTVGIATRFLDNVIDYNLERHALESQKDNATK 381

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG++G    L  + I Y S +A++  ++ M+     A   SVELA E+G++ SF 
Sbjct: 382 DRRIGLGILGLGDMLVRMGIKYDSDDAIQTVEQVMQIFRDGAYETSVELANEKGSFPSFD 441

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            + + +  F    I  L                   L  ++K  G+RNS  + + PT + 
Sbjct: 442 WAGYRKSQF----IKNLPRN----------------LNNKIKENGIRNSTVLTVPPTGSG 481

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A +  V+  I+P +   Y +          N        +  ++   +           G
Sbjct: 482 AIVARVTSGIEPIFATSYTRRVKK------NDGFGKTFNEYKVYHPIIKKL-------FG 528

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQ 891
           N E +PD       +A +IDP   ++     QK+ID + S  + L E  + + +  IY  
Sbjct: 529 NDENLPD----YVISAHDIDPYSRVKMQGVIQKYIDSSISSTVNLKEDVTLETVADIYMT 584

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           A+  GLK     R  S   +  +     D K
Sbjct: 585 AYKTGLKGITVYREGSREGILITEKPEKDKK 615


>gi|124262925|ref|YP_001023395.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
 gi|124262171|gb|ABM97160.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
          Length = 862

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/640 (22%), Positives = 260/640 (40%), Gaps = 74/640 (11%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCST 355
           +  L ++Y      + +E+    F RV+ G+A  E  + +   E  F++ + +       
Sbjct: 18  VDTLLEKYAKGDEQTAVEI----FARVSKGIAQAEKPELREHFEKVFFDNMQAGAIGAGR 73

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDL--------YGIFGALQENAMLAKYSGGLGNDWTPV 407
                       L++CF+  V D +         GI+ AL + A   +  GG+G D++ +
Sbjct: 74  IMSAGGSEIRATLANCFVQPVGDAVMGQDDDGYPGIYVALLQAAETMRRGGGVGYDFSRI 133

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + GT+  + G   ++ V + +   V   G R+GA    L   H DV EF+  ++
Sbjct: 134 RPKGAFVKGTHSSASGPCSYMDVFDKSCKTVESAGSRRGAQMGVLRIDHPDVMEFITAKR 193

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             G    R ++ N +  I + FM+ V     W L    E        GKE + A      
Sbjct: 194 EEG----RWNNFNVSVGIVEGFMEAVVAGGDWELVHKAE-------PGKEQKDAGAYRRA 242

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V+ K+ A  ++  ++   ++   P I F D  N  +  ++   + ++N C E
Sbjct: 243 DGL----WVYSKVPAKQIFDTIMRSTYDFAEPGILFIDNMNKDNNLRYCERIEATNPCAE 298

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C+LG + L     +      +FD++   + +   VR LDNV+D+    
Sbjct: 299 EPLPP----YGCCDLGPVILPRFVRDPFTPAARFDFEAYRAAVAVQVRFLDNVLDVTHWP 354

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+ ++ +   R IG+G  G    L +L + Y S E    A E    +   A  ASV+LA
Sbjct: 355 LEQQEQESRNKRRIGVGYTGLGDTLIMLGLRYNSDEGRAKAVEITREMRDAAYLASVDLA 414

Query: 703 QERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +E+G +  F    + ++G F                    SRLP + +K  ++  G+RNS
Sbjct: 415 KEKGRFPLFNAEKYLEEGTF-------------------ASRLP-EHIKAAIREHGIRNS 454

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + +AIAPT T++       S  I+P++   Y +   + D      + V +   R   +  
Sbjct: 455 HLLAIAPTGTVSLAFADNASGGIEPAFSLAYNRKKRTKDGGHTF-YAVKDHAFRVFSETV 513

Query: 820 MISDLK---------YHDGSI--GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
               L+         Y D  +  G   ++ D L     TA ++     ++     Q +ID
Sbjct: 514 CEPALRDGLIDAVCNYKDSFVVGGQTYQVKDVLPASFVTALDMTAAEHLQMMKDVQPYID 573

Query: 869 QAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS 907
            + S  + +           +Y  AW  GLK     R  +
Sbjct: 574 TSISKTVNVPADYPYDDFKGLYLAAWQAGLKGLSTYRPNA 613


>gi|148259205|ref|YP_001233332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
 gi|146400886|gb|ABQ29413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
          Length = 761

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/638 (23%), Positives = 256/638 (40%), Gaps = 85/638 (13%)

Query: 296 LGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +  QI   +Y L    G  ++   +  + RVA  LA  E E       FY  L  F F+ 
Sbjct: 21  ISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFVP 80

Query: 354 STPTLFNSGT-RHPQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           +   +  +GT R   L +CF +  + DDL  IF  L+E A+  +  GG+G D++ +R  G
Sbjct: 81  AGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPKG 140

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A + G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  ++  G 
Sbjct: 141 AAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKREPG- 199

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              R  + N +  + D FM+ V  +A W L                              
Sbjct: 200 ---RLRNFNLSVLVTDDFMRAVEADAAWDLVF---------------------------- 228

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E KV+R + A ALW  +    ++   P + F D  N R+   +   +H++N C E  L 
Sbjct: 229 -EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPLP 287

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   C LGSINL     +      + D  +LA  +  AVR+LD+ ID +   +E  
Sbjct: 288 P----YGACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEAQ 343

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++     R +GLG+ G   AL +  + Y +PEA   A +    I   A  AS  LA E+G
Sbjct: 344 REEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEKG 403

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  +  + +  G                      + L  ++++  +   G+RN+   ++
Sbjct: 404 AFPLYDAAQYLAGE-------------------TIAGLD-EDVRAAIAAHGIRNALLTSV 443

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+ +    S  ++P +   Y +  +  D +     + +               L+
Sbjct: 444 APTGTISLLSDNVSSGVEPVFALAYTRKVLQRDGSRREEEVTD-------------YALR 490

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KK 884
                 G    +P        TA E+ P   +   +  Q+ +D A S  + + E  G + 
Sbjct: 491 LFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFEA 546

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
              +Y  A+  G K     R  + T          D K
Sbjct: 547 FQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584


>gi|330720411|gb|EGG98732.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [gamma proteobacterium IMCC2047]
          Length = 715

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/664 (21%), Positives = 266/664 (40%), Gaps = 62/664 (9%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +D   +   L I   +Y L   NG  ++    A F RVA  LA  ET K+ +   +   L
Sbjct: 13  KDIPLQDASLDIWDKKYRLKAKNGEAVDTDVDATFRRVARALADVETGKKNQEKWYEKFL 72

Query: 347 SSFH--FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +     + +   + N+G +  +      +      + D +  I     E  +  K   G
Sbjct: 73  WALRKGVIPAGRIISNAGAKEHKPATSTINCTVSAVIHDSMTDILTKNLEAGLTLKAGCG 132

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV
Sbjct: 133 IGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDV 192

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYG 515
            EF+  ++  G    R    N +  I D F++ V   A W L  P    ++     DL G
Sbjct: 193 FEFIRAKREDG----RLRQFNLSLLITDEFIQAVKDQADWQLAFPVTAKEVENDGIDLEG 248

Query: 516 KEF-----EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            +        + +           +V++ + A  +W  +++  ++   P     D  N  
Sbjct: 249 DDIIWRESPNSEDYVHNDEGLVACRVYKTVKAQRVWDAIMSSTYDFAEPGFILIDKVNEM 308

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTI 625
           +       + ++N C E  L         C LGS+NL          N +FD+D+    +
Sbjct: 309 NNNWFCEQIRATNPCGEQPLPPYGS----CLLGSVNLTRFVVDPFTPNARFDWDEYRKVV 364

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R+LDNV++IN   +E+ +      R  G+G +G  S   +L + Y    ++E+ + 
Sbjct: 365 SIFTRMLDNVVEINGLPLEQQRHEIQNKRRHGMGYLGLGSTTTMLGLKYGDEASLELTER 424

Query: 686 SMEFISFHAISASVELAQERGAYS----SFKGSL---WDQGVFPIDSIGLLAEVRDELAM 738
             + ++      ++ELA+E+GA       F+ +      +     D   +  +V  ++  
Sbjct: 425 VTKEMAMVGWETALELAEEKGAAPIMDEMFEVTPCMLRKRPEMAKDGYKVGDQVAGKVLH 484

Query: 739 NRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            + SR          EL +++   G R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 485 AKYSRYMQQVAQENPELVEKLAEKGARFTHHTSIAPTGTISLSLANNASNGIEPSFAHHY 544

Query: 791 VKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ +         V+ F    L  R+L +   +             E   + L +   +
Sbjct: 545 SRNVIREGRKTKEKVDVFSYELLAYRELVNPKAMP----------YSENPEEQLPEYFIS 594

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           A +I P   ++  +  QKWID + S   N+  D P  +    IY  A+  GLK     R 
Sbjct: 595 ADDIKPKQHVDVQAASQKWIDSSISKTANVPTDFPY-QDFKDIYMYAYEQGLKGCTTFRF 653

Query: 906 RSAT 909
               
Sbjct: 654 NPEA 657


>gi|262275642|ref|ZP_06053451.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
 gi|262219450|gb|EEY70766.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
          Length = 718

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/656 (23%), Positives = 264/656 (40%), Gaps = 64/656 (9%)

Query: 293 FEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSS 348
           ++   ++I   +Y L      +  E     F RVA  LA  E E  +EK   EF   L  
Sbjct: 20  YQATSMEIWDSKYRLKSKHGDAIDETLDDTFKRVARALADLEEESVREKWYNEFLWALRH 79

Query: 349 FHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +     N+G          ++     T+ D +  I G + E  +  K   G+G D
Sbjct: 80  GAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYD 138

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV EF+
Sbjct: 139 FSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVMEFI 198

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL----HDLY----- 514
             ++  G    R    N +  I + F++ V  +  W L  P    +      DLY     
Sbjct: 199 RAKREDG----RLRQFNLSLLITEEFIEAVKNDGEWQLIFPVTEKEARQDGTDLYNDDNI 254

Query: 515 -GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              ++       E    R   K++R + A  LW  +++  ++   P     D  N  +  
Sbjct: 255 VWADWPSKEGLLEDDQGRVACKIYRTMPARNLWNVIMSSTYDYAEPGFILIDKVNQMNNN 314

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL          N +FD++     +   
Sbjct: 315 WFCEDIRATNPCGEQPLPP----YGACLLGSVNLTKFVRDPFTENARFDWEMYRKVVAIF 370

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +EK ++   T R  G+G +G  S L +L   Y S  ++   ++  +
Sbjct: 371 TRMLDNVVEINQLPLEKQREEIQTKRRHGMGFLGLGSTLTMLRHKYGSAASIAFTEQISQ 430

Query: 689 FISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      +V+LA E+G     +         +  +     D I +  +V+ ++   + 
Sbjct: 431 EMAITGWEQAVKLAAEKGPAPVMEQEFEVTPKMMRQRPEMAKDGIKVGDKVKGKVLHAKY 490

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          +L +++   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 491 SRYMQQIGEVRPDLIEKLVETGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRN 550

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V+ F    L  R+L       + K    S    E++P+       TA +
Sbjct: 551 VIKPGKKSKESVDVFSFELLAYRELI------NAKAMPYSTKEEEQLPE----YFITADD 600

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           I P   +E  +  Q+WID + S   N+  D P  +    IY  A+  GLK     R
Sbjct: 601 ITPSQHVEVQAAAQRWIDSSISKTANVPTDFP-FENFKDIYMDAYDKGLKGCTTFR 655


>gi|330998672|ref|ZP_08322402.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576533|gb|EGG58041.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 591

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/678 (26%), Positives = 284/678 (41%), Gaps = 94/678 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +  ++  ERD     +  + L + Y         + PQ  F  VA   A         A 
Sbjct: 1   MGIEIDLERDSLLGEVSRKRLRESYMK----EEEQSPQERFATVAETFASN----PAHAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCF   + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHV--------DIRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FL++RK TGD   RT +++    I D FM+ + ++        D+  +L D +      
Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS--MVNADADDSWELRDPHS----- 217

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG- 577
                         +V   +SA  +W+++L +  +TG P+I F D  N    S     G 
Sbjct: 218 -------------HRVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +H SNLCTEI L +S + TAVC L S+NL  +F +   +   +   +     VL   ID
Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNL-EYFDHWNTNEQFIPDVMEFLDNVLQYFID 323

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
              +++E+A+ S    R+IG+G +GF + L    IP  S  A  I       I       
Sbjct: 324 NAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEECARG 383

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
              L ++RG                                             +   I 
Sbjct: 384 DEILCEKRGPCPD----------------------------------------AKDAGIP 403

Query: 758 MRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+  A+AP A+ + I G +  SI+P   N+Y +  +SG   + N  L+  L++  L 
Sbjct: 404 RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEEYGLN 463

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + + + +  HDGS+ ++E +P  ++ +  TA EID  WLI+ A+ RQ++IDQ QSLNL+
Sbjct: 464 TDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQSLNLF 523

Query: 877 LDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                S   L   +  AW +GLK+ YY RS          L+  D     V       S 
Sbjct: 524 FPADVSIAYLHACHFLAWKVGLKSLYYCRS--------DKLRKADKLGEKVERHRLEESI 575

Query: 936 HSLGIPSSCTSDTECEVC 953
           +   +  + +    C  C
Sbjct: 576 NMREVLENSS----CLAC 589


>gi|251797975|ref|YP_003012706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
 gi|247545601|gb|ACT02620.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
          Length = 864

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/623 (22%), Positives = 257/623 (41%), Gaps = 61/623 (9%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            +  +  + P+  + R+A  +A  E  +EK       F  +L  +  +        +G  
Sbjct: 77  KLTLTIEKTPEEMWNRLAGAMAGVEQGEEKRRTWTERFRYILDDWKLVPGGRIAAGAGAS 136

Query: 365 HP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S 
Sbjct: 137 DELTLFNCYVIPSPKDSRGGIMTTLSEMTEIMARGGGVGINLSSLRPRRAVVAGVNGSSS 196

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +  + + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +
Sbjct: 197 GAVSWGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLS 252

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + + FMK V ++  W L  PD     +D   + ++   E +++   +     ++ + A
Sbjct: 253 VCVSNAFMKAVKEDLDWELVFPDTKETDYD---ELWDGDLEAWKKLGKKVVH--YKTVRA 307

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +W  ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL
Sbjct: 308 RDVWHTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPGW----GVCNL 363

Query: 603 GSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            +INL   +  ++ D  +++L    + +VR LDNVID   +  E+ +K+    R +GLG 
Sbjct: 364 SAINLSKFYDESKHDVNWEELGKVTQWSVRFLDNVIDTTPYHFEENEKNQKKERRVGLGT 423

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    +  L + Y SPE++   D+   F++  A  AS E+A E+G++ +F    + Q  
Sbjct: 424 MGLAELMIKLGVRYGSPESLLFLDKIYGFMAREAYLASAEIASEKGSFEAFDAEKFLQSG 483

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  + +    EV                  + V   GMRN   +  APT +   + G S 
Sbjct: 484 FMKNMVSEFPEV-----------------GEAVLAKGMRNVTVITQAPTGSTGTMVGTST 526

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y + +  G    +             W +A       H G         ++
Sbjct: 527 GIEPYFAFEYFRQSRLGFDKQLVPIAQ-------AWKDA-------HPG---------EE 563

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKT 899
           L     TA  +     I   +  Q+W+D + S         + ++   +Y  A+ +G K 
Sbjct: 564 LPDYFVTAMNLSAKDHIRVQAAIQRWVDSSISKTANCPSDFTVEETKELYEMAFDLGCKG 623

Query: 900 TYYLRSRSATSVEKSTLKGVDGK 922
               R  S      ST K  +  
Sbjct: 624 VTIYRDGSRDVQVLSTKKDDEKP 646


>gi|254468285|ref|ZP_05081691.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
 gi|207087095|gb|EDZ64378.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
          Length = 719

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/655 (21%), Positives = 255/655 (38%), Gaps = 60/655 (9%)

Query: 297 GLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            + I   +Y L         E  Q  + RVA  LA  E   +K   E +        + +
Sbjct: 25  SVDIWDKKYRLKKKDGNYVDETIQDTYERVAEALADVEPSNKKEWKENFLWALQHGAIPA 84

Query: 355 TPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
                N+G +  +      +      V D +  I   + E  +  K   G+G +++ +R 
Sbjct: 85  GRITSNAGAKEHKPATSTINCTVSGAVQDSMTDILDKVHEAGLTLKAGCGIGYEFSTLRP 144

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  ++  
Sbjct: 145 KGAFVAGAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKRED 204

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEFE 519
           G    R    N +  I   FM+ V  ++ W L  P           +  D      +++ 
Sbjct: 205 G----RLRQFNLSCLITKEFMEAVKSDSDWKLAFPVTEKEAKQDNLDFKDSEKTVWRDWP 260

Query: 520 IAYENYERQ----ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +  +   ++    A +   KV+  I A  LW  ++   ++   P     D  N  +    
Sbjct: 261 VKEKYIVKESGKDAGKVACKVYSTIKAKRLWDVIMASTYDYAEPGFILIDRVNEMNNNWF 320

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
              + ++N C E  L     E   C LGS+NL     N       FD+D+    +    R
Sbjct: 321 CENIRATNPCGEQPLP----EYGACLLGSVNLTMFVKNPFTDDAYFDWDEYKKVVSIFTR 376

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV++IN   + K +      R  G+G +G  S L ++ I Y  PE+++  +E    +
Sbjct: 377 MLDNVVEINGLPLGKQRDEIMQKRRHGMGYLGLGSTLTMMKIKYGDPESIKFTEEVTRIL 436

Query: 691 SFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           +       +ELA+E+G+       +   +  L  +     D I +  +V  ++ M + S+
Sbjct: 437 AEEGWKVGIELAKEKGSAPIMEELFEITEQMLQMRPEMKADGIKVGDKVAGKVLMGKYSK 496

Query: 744 LPW---DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD 798
                 +EL+  +   G+R S+  +IAPT TI+       S  I+PS+ + Y ++ +   
Sbjct: 497 YMQQFPEELRNEIAENGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIREG 556

Query: 799 FT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 V+ F    L  R L ++  +   +  D          + L      +  I    
Sbjct: 557 KKTKEKVDVFSFELLAYRSLINDKAMPFSEKED----------EVLPDYFIDSSTIKTKN 606

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            ++  +  QKWID + S  + +      +    IY  A+  GLK     R     
Sbjct: 607 HVDIQAAAQKWIDSSISKTINVPTDYDFEDFKEIYMYAYEKGLKGCTTFRFNPEA 661


>gi|257092627|ref|YP_003166268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045151|gb|ACV34339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 969

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/594 (25%), Positives = 251/594 (42%), Gaps = 73/594 (12%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL-------YG 382
           +E ++ +    F     +  F+ +      +GT     L +CF+  + D +        G
Sbjct: 60  EEKQRGQWEARFLWAQENG-FVPAGRINSAAGTTLAATLINCFVQPIGDSVVEIVDGKPG 118

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ AL E A   +  GG+G D++ +R +GA + GT  ++ G + +++V + +   V   G
Sbjct: 119 IYSALAEAAETMRRGGGVGYDFSAIRPMGAIVKGTQSRASGPVSYMRVFDRSCETVESAG 178

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    L   H D+E F+  +     D     + N +  + D FM+ V  +A     
Sbjct: 179 SRRGAQMGVLRCDHPDIEVFIHAK-----DHGDLTNFNVSIAVTDAFMEAVEADA----- 228

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              EV   H             ++R        V+R++ A  LW +++   ++   P I 
Sbjct: 229 ---EVELTHRAEPNADMKRASAFQRDDGI---WVYRRVRARDLWDQVMKSTYDHAEPGIL 282

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFD 617
           F D  N  +   +  V+ ++N C E  L         C LGSINL     +      +FD
Sbjct: 283 FLDRMNKDNNLYYCEVIEATNPCAEQPLPP----YGCCCLGSINLTLFVKDAFSARAEFD 338

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +      I+ + R+LDNV+D+    +++ ++     R +GLG  G    L +L + Y  P
Sbjct: 339 FAAFGEVIKVSTRMLDNVLDVTAWPLDRQREEAANKRRVGLGFTGLGDTLCMLCLRYDRP 398

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +     EF+   A  ASV+LA+ERGA+  F   L+  G                  
Sbjct: 399 EATAMGARISEFMRDTAYLASVDLAKERGAFPLFNAELYLSGG----------------- 441

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
            N  SRLP  E+K  ++  G+RNS+ ++IAPT TI+       S  I+P +   Y +   
Sbjct: 442 -NFASRLP-TEIKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPFSWTYSRKKR 499

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             D T +  + V +   R          L  H G  G++E++PD       TA EI    
Sbjct: 500 MADGT-LKEYAVEDYAWR----------LYKHQG--GDVEKLPD----YFVTALEISAKA 542

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             +  +    +ID + S  + +      +    +Y  AW  GLK     R  + 
Sbjct: 543 HKDMVAAVAPYIDTSISKTVNVPADYPYEDFQDLYLSAWKAGLKGLATYRPNAV 596


>gi|160885202|ref|ZP_02066205.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|237714835|ref|ZP_04545316.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237720010|ref|ZP_04550491.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260174146|ref|ZP_05760558.1| putative ribonucleoside reductase [Bacteroides sp. D2]
 gi|262406893|ref|ZP_06083442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|293368853|ref|ZP_06615457.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|294643070|ref|ZP_06720909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294807801|ref|ZP_06766591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|299147888|ref|ZP_07040951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|315922411|ref|ZP_07918651.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109552|gb|EDO11297.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|229445160|gb|EEO50951.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229450562|gb|EEO56353.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262355596|gb|EEZ04687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|292636158|gb|EFF54646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|292641589|gb|EFF59768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294444998|gb|EFG13675.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298514071|gb|EFI37957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|313696286|gb|EFS33121.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 847

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/719 (21%), Positives = 280/719 (38%), Gaps = 111/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKQIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E++      A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARVESKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                          +    ++I A  LW+K++   +++  
Sbjct: 232 YVQQYPID------------------------SAQPTFTKEIDASTLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCH------------------------TIEK 645
                 FD+D     +  A R++D++ID+                             EK
Sbjct: 324 FKPDAYFDFDLFQKHVALAQRIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F         +                 L + +K  G RN  C+ 
Sbjct: 444 GAFEIYNSEREQNNPFIQRLAAADPK-----------------LYEDMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE-----------LKQR 813
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E             + 
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKF 546

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   D      +   I+ +        AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEANGYD-PARRYTQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 606 TINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664


>gi|90410606|ref|ZP_01218622.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
 gi|90328847|gb|EAS45131.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
          Length = 716

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/659 (22%), Positives = 264/659 (40%), Gaps = 64/659 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEK--EKRAVEFYNL 345
           D A++   ++I   +Y L         E     F RVA  LA  E +K  E    EF   
Sbjct: 15  DIAYQSTSMEIWNSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74

Query: 346 LSSFHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           L +     +     N+G          ++     T+ D +  I G + E  +  K   G+
Sbjct: 75  LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ 
Sbjct: 134 GYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLY-- 514
           +F+  ++  G    R    N +  I + F++ V  +  W+L  P    +      DL+  
Sbjct: 194 DFIRAKREDG----RLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDKLDLHTD 249

Query: 515 ----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                 ++ +     E +  R   K++R + A  LW  ++T  ++   P     D  N  
Sbjct: 250 SSIMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
           +       + ++N C E  L         C LGSINL     +       FD+D     +
Sbjct: 310 NNNWFCEEIRATNPCGEQPLPP----YGACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S  ++   ++
Sbjct: 366 AIFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLTHKYGSAASIAFTEQ 425

Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738
             + ++      ++ LA+E+GA              +  +     D I +  +++ ++  
Sbjct: 426 VAQELAISGWKEALSLAKEKGAAPVMDQVFTITAKMMRQRPEMADDGIKVGDKIKGKVLH 485

Query: 739 NRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            + SR          EL + + T+G R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545

Query: 791 VKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ +         V+ +    L  R+L +       K    S     ++P+       T
Sbjct: 546 SRNVIVTGKKTKESVDVYSFELLAYRELVNS------KAMPYSTDEETQLPE----YFIT 595

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           A +I P   ++  +  Q+WID + S   N+  D P  +    IY  A+  GLK     R
Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFP-FEDFQDIYMNAYDKGLKGCTTFR 653


>gi|298479867|ref|ZP_06998067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
 gi|298274257|gb|EFI15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
          Length = 847

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/719 (21%), Positives = 280/719 (38%), Gaps = 111/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKQIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E++      A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARVESKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                          +    ++I A  LW+K++   +++  
Sbjct: 232 YVQQYPID------------------------SAQPAFTKEIDASTLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCH------------------------TIEK 645
                 FD+D     +  A R++D++ID+                             EK
Sbjct: 324 FKPDAYFDFDLFQKHVALAQRIMDDIIDLELEKIERIMTKIDEDPENEEVKHAERALWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F         +                 L + +K  G RN  C+ 
Sbjct: 444 GAFEIYNSEREQNNPFIQRLAAADPK-----------------LYEDMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE-----------LKQR 813
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E             + 
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKF 546

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   D      +   I+ +        AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEANGYD-PARRYTQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 606 TINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPP 664


>gi|282877838|ref|ZP_06286650.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
 gi|281300049|gb|EFA92406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
          Length = 861

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/705 (21%), Positives = 281/705 (39%), Gaps = 101/705 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEK--EKRAVEFYNLL 346
           FA + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E ++LL
Sbjct: 20  FAGDELAARVWVNKYSMKDSFGNIYEKSPEDMHCRIANEIARIEKKYKNPMSAREIFDLL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFKYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+  T +  +    P                
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDAFMEAATSDKPYVQQFP---------------- 238

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                    D  E  V R+ISA ALW K++   +++  P + F D     S       + 
Sbjct: 239 --------VDGDEPLVKREISAKALWEKIVHNAWKSAEPGVLFWDTITRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNV 635
              + T             C L SINL ++       +  FD DK    ++ A R++D++
Sbjct: 291 FRTVSTNPCGEIPLCPYDSCRLLSINLYSYVVHPFTKDAYFDMDKFRKHVQIAQRIMDDI 350

Query: 636 ID------------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D                           H  EK K  +   R  G+G+      +  + 
Sbjct: 351 VDLELEKIDRIMQKIQQDPQSDEVKGSEYHLWEKIKHKSSQGRRTGVGITAEGDMIAAMG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y +PEA E +    + ++  A  +SV +AQERGA++ F  S      F +        
Sbjct: 411 LRYGTPEATEFSVNVHKNLALSAYRSSVTMAQERGAFAVFDASREKNNPFLLR------- 463

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      +    +L   ++  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 464 ----------IKEADQQLYADLQKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 -KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN------------IERIP 838
            +  ++ + T V+   V+E+   D ++E ++   K+ +    N            I+++ 
Sbjct: 514 RRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFLEWMNVNGIDSTKKYTQEEIDKLV 571

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGL 897
                  ATA ++D +  ++     QKW+D + S+ + L     + L + +Y +AW  G 
Sbjct: 572 AQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWKSGC 631

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R  S   V  S  K    +       D ++  ++L    
Sbjct: 632 KGCTIYRDGSRAGVMISVSKSEKKQKGKEQAKDNSAGQNALPPCK 676


>gi|298383753|ref|ZP_06993314.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
 gi|298263357|gb|EFI06220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
          Length = 845

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/718 (22%), Positives = 287/718 (39%), Gaps = 111/718 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKQIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      A E Y+LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P E                               ++I A  LW+K++   +++  
Sbjct: 232 YIQQYPIE------------------------SANPTTTKEIDASTLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S       +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------------KSNHTH---- 653
                 FD++     +  A R++D++ID+    IE+              K    +    
Sbjct: 324 FKPDAYFDFELFKKHVALAQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNK 383

Query: 654 --------RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  LAE                EL   +K  G RN  C+ 
Sbjct: 444 GAFEIYSNEREQNNPF----IQRLAEADP-------------ELYAEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAM 820
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E     ++  ++    
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKF 546

Query: 821 ISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           ++ ++ +        S   I+ +        AT+ ++D +  ++   R QKW+D + S+ 
Sbjct: 547 VTWMEANGYDPAKRYSQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVT 606

Query: 875 LYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 607 INLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKETLPPCKPP 662


>gi|221632943|ref|YP_002522166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
 gi|221155926|gb|ACM05053.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
          Length = 589

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/606 (26%), Positives = 260/606 (42%), Gaps = 81/606 (13%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            G  IE  +  F RVA  +A  E          + A +FY L+++  F+ +TP L N+GT
Sbjct: 23  EGRIIETEEELFWRVARAVAAAEDAFPRGPRSAEIAEKFYELMTTLRFLPNTPALINAGT 82

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  QL +CF+  VPD L GIFGA+++ A + +  GG G  ++ +R  G  +  T   S G
Sbjct: 83  QLGQLFACFVIPVPDSLDGIFGAVRDAAKIQQTGGGTGFSFSHLRPRGDLVRSTRRPSSG 142

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            + F+++ +  +  +     R GA  A L   H DV EF+D ++N     R     N + 
Sbjct: 143 AVSFIRIFDVASDVIATESVRGGANMAVLRCDHPDVREFIDAKRNPALFSR----FNFSV 198

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D F++   +     L +P          G  F  A                   +A 
Sbjct: 199 LVTDDFLRAAIERREIALINPRT--------GLPFAQA-------------------NAG 231

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L+  M+   +E G P + F D     +    +G + ++N C E+ L+        C LG
Sbjct: 232 ELFDAMVDAAWEVGDPGLLFYDRIQRDNAVPALGPLEATNPCGEVPLHPWE----ACVLG 287

Query: 604 SINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           S+NL A           D   L  + R A+R LDN+++++ +   + +     +R +GLG
Sbjct: 288 SLNLRAFIVERGDRAFLDEAGLQESARLALRFLDNMVEVSRYPKVEIETICRANRKVGLG 347

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY S E+V +AD  M  +   A+ AS  LA+ERG + +F  S +   
Sbjct: 348 IMGFADLLLALRIPYGSDESVAVADRVMGLVQAAAVEASRRLAEERGPFPNFPISRYAAR 407

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
             P                                    RN+    +APT +I+ I G S
Sbjct: 408 GEPP----------------------------------RRNATVTTVAPTGSISIIAGCS 433

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P Y   Y            +  L+ EL +   +D A++ +++   G IG+   +P+
Sbjct: 434 SGIEPLYALAYRHVGEFVGIVEPHPLLLRELSRIGKYDPALLHEIEV-TGRIGHRTDLPE 492

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +L+++   A EI P   I   +  Q+ ++ A S  + L  E +   +   +  A  +G K
Sbjct: 493 ELRRLFRVATEISPEEHIRVQAAVQRHVENAVSKTINLPYEATRDDVRRAFLLAHELGCK 552

Query: 899 TTYYLR 904
                R
Sbjct: 553 GVTVYR 558


>gi|288929559|ref|ZP_06423403.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329064|gb|EFC67651.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 854

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/686 (23%), Positives = 274/686 (39%), Gaps = 104/686 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
              A  L Y   FA + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +  
Sbjct: 11  EAFAAALDY---FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYP 67

Query: 337 K--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQ 388
               A E Y LL  F ++    S  T   +G +   LS+CF+  +    D    I    +
Sbjct: 68  NPLSAQEVYELLDHFRYIVPAGSPMTGIGNGYQVASLSNCFVVGLEGDADSYGAILRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P E  
Sbjct: 187 MLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDSFMQAAVDDKPYVQQFPIEGD 242

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +                          V ++ISA  LW K++   +++  P + F D   
Sbjct: 243 NPE------------------------VKKEISAKTLWEKIVHNAWQSAEPGVLFWDTIL 278

Query: 569 IRSPQQHVG----VVHSSNLCTEITLNSSSEETAVC-NLGSINLLAHFANNQFDYDKLAS 623
             S             S+N C EI L        +C NL S  +        FD+DK A 
Sbjct: 279 RESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLCVNLFSYVVNPFTKEAYFDFDKFAK 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            +  A R++D+++D                           H  EK K+ +   R  G+G
Sbjct: 339 HVAVAQRIMDDIVDLELEKIDLIMEKIKDDPQNDEVKGAEYHLWEKIKRKSSMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  L + Y + EA +++    + ++  A  +SV +A+ERGA+  F        
Sbjct: 399 ITAEGDMIAALGLRYGTQEATDVSVSVHKRLALAAYRSSVVMAKERGAFEIFDAKREAAN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F    I  L E                 L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PF----ILRLKEAD-------------QSLYDDMVAYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN----- 833
             I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+ D    N     
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTD 559

Query: 834 -------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
                  I+ I +      ATA ++D +  +      QKW+D + S+ + L     + L 
Sbjct: 560 KRYTQEEIDAIVEQSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNLPNDVDEALV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSV 911
           + +Y +AW  G K     R  S + V
Sbjct: 620 NRLYVEAWRSGCKGCTIYRDGSRSGV 645


>gi|332883039|gb|EGK03323.1| hypothetical protein HMPREF9456_01960 [Dysgonomonas mossii DSM
           22836]
          Length = 847

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/696 (22%), Positives = 274/696 (39%), Gaps = 105/696 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           + + +  FD  Y A  L Y   F  + L  ++  ++Y L    G+  E  P+    R+A 
Sbjct: 1   MAQKVYTFDEAYRA-ALDY---FNGDELAAKVWVNKYALKDATGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +   E++ +      E Y+L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIGRIESKYKNGLTTQELYDLFDQFKYIVPQGSPMTGIGNDYQIASLSNCFVIGMEGSSD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V     
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSESFIDAKMIEG----KVTGANVSVRIDDAFMQAVVDGTP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P +  +                            +   A  LW+K++   +++  
Sbjct: 232 YTQQYPIDSDN------------------------PTTVKDTDATELWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFAN 613
           P + F D     S       +     S+N C EI L           NL S  +     +
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKED 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD++     +  A R++D++ID                           H  EK +K 
Sbjct: 328 AYFDFELFKKHVGLAQRIMDDIIDLETEKIDKILNKIEIDPENEEVKWPERHLWEKIRKK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      +  + + Y + EA   A+E    ++  A  ASVELA+ERGA+ 
Sbjct: 388 TLQGRRTGVGITAEGDMIAAMGLRYGTEEATTFAEEVHRTLAVAAYRASVELAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F         F    I  LAEV  +             L K ++  G RN  C+ +APT
Sbjct: 448 IFDIERERNNPF----INRLAEVDPK-------------LYKDMEKYGRRNIACLTVAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            T + +   +  I+P +  +Y  +  ++ +   V    V+E    D W+E ++   K+  
Sbjct: 491 GTTSLMTQSTSGIEPVFLPVYKRRRKVNPNDKEVRVDFVDENG--DSWEEYVVFHHKFVT 548

Query: 829 G------------SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                        +   I+++  +     AT+ ++D +  ++   R QKW+D + S+ + 
Sbjct: 549 WMESKGYPAAKRYTNEEIDKMIAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSISVTIN 608

Query: 877 LDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
           L     + L + +Y +AW  G K     R  S   V
Sbjct: 609 LPSDVSEDLVNQLYIEAWKSGCKGCTVYRDGSRAGV 644


>gi|303258317|ref|ZP_07344320.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302858763|gb|EFL81851.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 591

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/678 (26%), Positives = 283/678 (41%), Gaps = 94/678 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +  +   ERD     +  + L + Y         + PQ  F  VA   A         A 
Sbjct: 1   MGIEFDLERDSLLGEVSRKRLRESYMK----EEEQSPQERFATVAETFASN----PAHAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCF   + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHV--------DIRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FL++RK TGD   RT +++    I D FM+ + ++        D+  +L D +      
Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS--MVNADADDSWELRDPHS----- 217

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG- 577
                         +V   +SA  +W+++L +  +TG P+I F D  N    S     G 
Sbjct: 218 -------------HRVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +H SNLCTEI L +S + TAVC L S+NL  +F +   +   +   +     VL   ID
Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNL-EYFDHWNTNEQFIPDVMEFLDNVLQYFID 323

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
              +++E+A+ S    R+IG+G +GF + L    IP  S  A  I       I       
Sbjct: 324 NAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEECARG 383

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
              L ++RG                                             +   I 
Sbjct: 384 DEILCEKRGPCPD----------------------------------------AKDAGIP 403

Query: 758 MRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+  A+AP A+ + I G +  SI+P   N+Y +  +SG   + N  L+  L++  L 
Sbjct: 404 RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEEYGLN 463

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + + + +  HDGS+ ++E +P  ++ +  TA EID  WLI+ A+ RQ++IDQ QSLNL+
Sbjct: 464 SDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQSLNLF 523

Query: 877 LDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                S   L   +  AW +GLK+ YY RS          L+  D     V       S 
Sbjct: 524 FPADVSIAYLHACHFLAWKVGLKSLYYCRS--------DKLRKADKLGEKVERHRLEESI 575

Query: 936 HSLGIPSSCTSDTECEVC 953
           +   +  + +    C  C
Sbjct: 576 NMREVLENSS----CLAC 589


>gi|329913475|ref|ZP_08275946.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545350|gb|EGF30583.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 794

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/630 (23%), Positives = 259/630 (41%), Gaps = 73/630 (11%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFH--FMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA G+A  ET  + R       L +    ++ +      +G      L +CF+  V D 
Sbjct: 4   RVAKGIAEPETNAKNRKAWTAKFLWAQQNGWVPAGRINSAAGLPLKATLMNCFVQPVGDS 63

Query: 380 LYGI-------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + G        + A+ + A   +  GG+G +++ +R  GA + GTN ++ G I +++V +
Sbjct: 64  VTGFSDGKPGIYTAIAQAAETMRRGGGVGYNFSEIRPEGALVKGTNSRASGPISYMRVFD 123

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H DV  F+  +++         + N +  + D FM+ 
Sbjct: 124 SSCSTVESAGARRGAQMGVLNCDHPDVLNFITAKRD-----GSLSNFNLSVGVTDAFMQA 178

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +    L           +    F+              + V+++++A  +W  M+  
Sbjct: 179 VASSGTIQLIH-KAAPGNELMQAGAFQR----------DDGMWVYKEVAAQEIWGLMMQS 227

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P I + D  N  +   +   + ++N C E  L     +   C+LGS+NL     
Sbjct: 228 TYDFAEPGILYIDRMNQENNLYYCEKIEATNPCAEQPLP----DYGCCDLGSVNLTLCVT 283

Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +       FDY K +  ++  +R LDNV+D +   +E+ +      R IGLG +G  SA+
Sbjct: 284 DPFSERASFDYAKFSQLVQIGIRFLDNVLDASQWPLEEQRLEAMNKRRIGLGFLGLGSAM 343

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L I Y S      A +  E +   A  ASV+LA+E+GA+  F  + +  G F      
Sbjct: 344 VMLGIRYDSDAGRTFAAKVSEEMRDAAYRASVDLAKEKGAFPLFDAAKYLAGAF------ 397

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPS 785
                         SRLP D +++ + T G+RNS+ ++IAPT TI  + G   S  I+P+
Sbjct: 398 -------------VSRLPAD-IREGIATFGIRNSHLLSIAPTGTITLVFGDNASNGIEPA 443

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +     D + +  F V +   R                 + +  ++P +     
Sbjct: 444 FSWNYTRKKRMMDGS-IQEFEVADHAWRLYRQMGF---------DVSDDSKLPPE----F 489

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLR 904
            +A  +     ++     Q +ID + S  + +       +   +Y   W  GLK     R
Sbjct: 490 VSALTMSATDHMKMLESVQPFIDTSISKTVNVPADYDFDEFRNLYMDGWKAGLKGLATYR 549

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
             S      S +K    ++ AV V   N  
Sbjct: 550 PNSILGSVLS-VKSATPEVAAVAVGPDNDP 578


>gi|303235869|ref|ZP_07322472.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
 gi|302483742|gb|EFL46734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
          Length = 865

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/744 (20%), Positives = 278/744 (37%), Gaps = 108/744 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +       FD  + A+     R F  + L  ++  ++Y +  + G   E  P+    R+A
Sbjct: 1   MKESRTYTFDEAFEASL----RYFNGDELAARVWVNKYAMKDSFGKIYEKSPEDMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    +       + Q   LS+CF+  +    
Sbjct: 57  NEVARIEKKYKNPISAQEVFDLLDHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGDA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAILRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+    + 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDSFMEAAVNDK 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P +                               ++ISA  LW K++   +++ 
Sbjct: 232 EFVQQFPID------------------------SAHPTFKKEISAKKLWDKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----- 612
            P I F D     S       +    + T             C L SINL ++       
Sbjct: 268 EPGILFWDTITRESLPDCYADLGFRTISTNPCGEIPLCPYDSCRLLSINLYSYVKHPFTK 327

Query: 613 NNQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              FD+D     ++ A R++D+++D                           H  EK K 
Sbjct: 328 EATFDFDLFKKHVQLAQRIMDDIVDLEMEKIDLIMEKVKDDPQNDEVKLAEYHLWEKIKD 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA   + E  + ++  A  +SV +AQERGA+
Sbjct: 388 KSGKGRRTGVGITAEGDMIAAMGLRYGTEEATAFSVEVHKTLALCAYRSSVTMAQERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S F      +  F +                   +     L   +   G RN  C+ IAP
Sbjct: 448 SIFDAKREAENPFLLR-----------------IKEAEPALYDDMIKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++ +  I  
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYTRRRKVNPNDTGVHIDFVDEVGDSFEEYIVYHKKFIEW 550

Query: 824 LKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +K +        +   I  +        ATA ++D +  ++     QKW+D + S+ + L
Sbjct: 551 MKVNGLDTEKKYTQEEINELVKRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNL 610

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
                + L + +Y +AW  G K     R  S + V  S  K    +      T     T 
Sbjct: 611 PNNVDEVLVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKEALENEQTTEKDLTS 670

Query: 937 SLGI-------PSSCTSDTECEVC 953
           +          P       +   C
Sbjct: 671 AEETHEHICMPPRVVEIRPQVLDC 694


>gi|88705203|ref|ZP_01102914.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
 gi|88700293|gb|EAQ97401.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
          Length = 715

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/657 (22%), Positives = 257/657 (39%), Gaps = 62/657 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF---FMRVAMGLALKETEKEKRAVEFYNL 345
           D   +   ++I  ++Y L    G+ I+        F RVA  LA  ET   +   E +  
Sbjct: 16  DVPMQETSVEIWSEKYGLRDHEGNSID--GDMNGSFKRVAAALAKVETSDHEDWKEKFEW 73

Query: 346 LSSFHFMCSTPTLFNSGTRH-----PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
                   +   + N+G          ++      + D + GI  A  E  +  K   G+
Sbjct: 74  ALRNGATPAGRIMSNAGAEKYKPSTSTINCTVSGPISDSMEGILQANLEAGLTLKAGCGI 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA++ G   ++ G + F+++ + T   V+  G R+GA     +  H DV 
Sbjct: 134 GYEFSTLRPSGANVAGAGAETSGPLSFMEIFDATCKTVSSAGGRRGAQMGTFDVSHPDVF 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY------ 514
           EF+  ++  G         N +  I D FM+ V     W L  P +  +L D        
Sbjct: 194 EFIRAKRTDGM----LRQFNLSLLITDEFMEAVKAEGDWPLVFPIKADNLEDAEKKAGSR 249

Query: 515 ---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
               K F I       +      K++  + A  LW +++++ ++   P     D  N+ +
Sbjct: 250 GILWKYFPITDGYLSNEVGEVACKIYNVVKARELWDEVMSLTYDYAEPGFILIDKYNVMN 309

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIR 626
                  + S+N C E  L         C LGS+NL     +       FD+DK      
Sbjct: 310 NNWFCENIRSTNPCGEQGLPYYGS----CLLGSVNLTRFIVSPFTDRAAFDWDKFREVTA 365

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R++DNV++IN   + +  +   T R  G+G +G  SA+ L+ + Y S EAV   D  
Sbjct: 366 IFTRMMDNVVEINGLPLPEQVEEITTKRRHGIGYLGLGSAVTLMGMRYGSEEAVAFTDRV 425

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSL-------WDQGVFPIDSIGLLAEVRDELAMN 739
              ++       +ELA+E+GA      +          +     D   L  +V   + M 
Sbjct: 426 SRELAVVGWKVGLELAKEKGAAPILDKNYDVTGEMLNARPEMIADGFKLGDKVSGRVLMA 485

Query: 740 RTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYV 791
           R SR          +L   ++  G R ++  +IAPT TI  +     S  I+PS+ + Y+
Sbjct: 486 RYSRYMQTIAEVEPQLVAEIEQHGARFTHHSSIAPTGTIAFSFANNSSNGIEPSFAHSYM 545

Query: 792 KSNMSGDFTVVNSFLV---NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           ++ +           V     L  R L +    +D    +G        P+ L     T 
Sbjct: 546 RNIIKAGKKTKQQTEVQSFELLAYRHLINPE--ADPYATEG--------PNKLPDYFITT 595

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I P   ++  +  QKWID + S  + +  E        +Y  A+  GLK     R
Sbjct: 596 NDISPKEHVDMQAASQKWIDSSISKTVNVPTEIPYDSFKDVYMYAYERGLKGCTTFR 652


>gi|221316491|ref|ZP_03598296.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 568

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 278/592 (46%), Gaps = 70/592 (11%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LS+ +   +TPTL N+G     LSSCF+ T  D L GIF    + +  +K   G+G  + 
Sbjct: 1   LSNLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFG 60

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I G  G + G++ ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DL
Sbjct: 61  KLRATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDL 120

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGK---- 516
           R NTGD  +R +++ T   IPD FM++V +   + LF P E+       L D Y K    
Sbjct: 121 RLNTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLG 180

Query: 517 ------EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                   + A+  +            R++ A+ L ++ +    ETG P++ ++D  N  
Sbjct: 181 EKETPNPIDHAWTYHYYLCVDNNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRN 240

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE----------------ETAVCNLGSINLLAHFANN 614
           +P  H G+++SSNLC+EI  N S                     + +L + NL +   N 
Sbjct: 241 NPNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNR 300

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                     I+  +R LDNVI +    + +A+ +N  +RA+G G  G  + L    I +
Sbjct: 301 TEKDGVTERVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMW 360

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S +A+E   +  E I  + I AS  L +E+G+Y  F+GS W  G           E  +
Sbjct: 361 DSEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG-----------EWFE 409

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           E  +N      W E+K+      MRN    AIAPT   + I G +  IDP +  +Y +  
Sbjct: 410 ERDLNSPE---WLEVKELASKY-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFERK 465

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                      LV EL Q+  +       ++Y +                     ++  +
Sbjct: 466 KDFHL----PILVPELNQKTWFFYKPTMKMEYENEK-------------------QLAHL 502

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
           W I+  + RQK++DQA S N Y+ +    K    ++ + W  G+KT+YY RS
Sbjct: 503 WAIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 554


>gi|319788201|ref|YP_004147676.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466713|gb|ADV28445.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 718

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/660 (21%), Positives = 258/660 (39%), Gaps = 62/660 (9%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            +     I   +Y L    G  ++      + RVA  LA  E  +EKR   +   L +  
Sbjct: 20  LQPASQDIWDKKYRLKTKQGEPLDADIDGTYQRVARALADAEQTEEKRTYWYERFLWALR 79

Query: 351 --FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
              + +     N+G +  +      +     T+ D + GI   + E  +  K   G+G +
Sbjct: 80  RGAIPAGRITSNAGAQEHKPATSTINCTVSGTIGDSMDGILEKVHEAGLTLKAGCGIGYE 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ + +     V+  G R+GA     +  H DV++F+
Sbjct: 140 FSTLRPRGAFVAGAGAYTSGPMSFMDIFDKMCFTVSSAGGRRGAQMGTFDVSHPDVKDFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD--------LYG 515
             ++  G    R    N +  I D FM+ V  +  W L  P    +  D        +  
Sbjct: 200 RAKREDG----RLRQFNLSLLITDGFMEAVDADGDWPLVFPVNRKEEADIDLSNADQVVW 255

Query: 516 KEFEIAYENY-ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           +++    + Y  R       K++  I A  LW  ++   ++   P     D  N  +   
Sbjct: 256 RDWPAHDDAYIVRDDGMVACKIYGHIKARHLWEMIMVSTYDYAEPGFILIDRVNEMNNNW 315

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL     +       FD+++    +R   
Sbjct: 316 WCENIRATNPCGEQPLPP----YGACLLGSVNLTKFVRDPFTDKASFDWEEYKEVVRVFT 371

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV+++N   +E+ +      R  G+G +G  S L +L + Y S +++   ++    
Sbjct: 372 RMLDNVVEVNGLPLEQQRNEIMRKRRHGMGFLGLGSTLTMLRMKYGSADSLGFTEQVARD 431

Query: 690 ISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++       + LA+E+G       +       L  +     D   +  E+  ++   R S
Sbjct: 432 MAVAGWEVGLSLAKEKGPAPIMDETFTVTPQMLRQRPEMAKDGWRVGQEIEGKVLHARYS 491

Query: 743 RLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           R          +L   +   G R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 492 RYMQRIASVAPDLVDELAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNV 551

Query: 795 M---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ +    L  R+L +   +        S     ++PD       +A +I
Sbjct: 552 IREGKKSKEKVDVYSFELLAYRELVNPKAMPF------SDDPEAQLPD----YFISADDI 601

Query: 852 DPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            P   ++  +  QKW+D + S   N+  D P  +    IYR A   GLK     R   A 
Sbjct: 602 SPKEHVDVQAAAQKWVDSSISKTANVPTDYPY-EDFKDIYRYAHQQGLKGCTTFRFNPAA 660


>gi|319899891|ref|YP_004159619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
 gi|319414922|gb|ADV42033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
          Length = 845

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/704 (22%), Positives = 284/704 (40%), Gaps = 101/704 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK 337
           Y  +  +  R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +   
Sbjct: 8   YDESYEESLRYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEIARIEAKYPN 67

Query: 338 R--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQE 389
              + E +NLL+ F ++    S  T   +  +   LS+CF+  V    D    IF   +E
Sbjct: 68  ALSSEELFNLLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEE 127

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+ 
Sbjct: 128 QVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALM 186

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             +   H D E F+D +   G    +    N +  + D FM+   +   +T   P +   
Sbjct: 187 LSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDSFMQAAIEGKPYTQQYPIDA-- 240

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                  E    ++I A ALW+K++   +++  P + F D    
Sbjct: 241 ----------------------AEPIFKKEIDASALWKKIVHNAWKSAEPGVLFWDTILR 278

Query: 570 RSPQQHVGVVH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKLAST 624
            S       +     S+N C EI L           NL S  +    ++  FD+D     
Sbjct: 279 ESVPDCYEDLGYRTISTNPCGEIPLCPYDSCRLLAINLYSYVINPFKSDAYFDFDLFKKH 338

Query: 625 IRTAVRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGL 660
           +  A R++D++ID+    IE                        K  K +   R  G+G+
Sbjct: 339 VALAQRIMDDIIDLELEKIERIMKKIDSDPEDEEVKRTELSLWQKIYKKSRQGRRTGVGI 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L  L + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  +         
Sbjct: 399 TAEGDMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEIYNTEREKDNP 458

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F    I  L E                EL + +K  G RN  C+ IAPT T + +   + 
Sbjct: 459 F----INRLREADP-------------ELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTS 501

Query: 781 SIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD-----------LWDEAMISDLKYHD 828
            I+P +  +Y  +  ++ + T V+   ++E                 W EA   +     
Sbjct: 502 GIEPVFLPVYKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKFVTWMEAQGYN-PAKR 560

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
            +   I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L     ++L + 
Sbjct: 561 YTQEEIDTMVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNR 620

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 621 LYVEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKEGLPPCKPP 662


>gi|330995971|ref|ZP_08319865.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
 gi|329573968|gb|EGG55546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
          Length = 845

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/726 (21%), Positives = 281/726 (38%), Gaps = 103/726 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + E    +D       L+Y   F  + L  ++  ++Y +  + G   E  P+    R+A 
Sbjct: 1   MKEKTYSYDEA-FEAALQY---FNGDELAARVWVNKYSMKDSYGHIYEVSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +A  E + E   +A E + LL  F ++    +       + Q   LS+CF+  +    D
Sbjct: 57  EIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGQAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM    +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMHAAIEGKS 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + S                           V + I+A  LW+K++   +++  
Sbjct: 232 YTQQYPIDSS------------------------SPMVAKDINAQDLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL A+  N     
Sbjct: 268 PGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYAYVVNPFTPE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD+D     ++ A R++D++ID                           H  EK  K 
Sbjct: 328 AYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKVDADPESEEVKGTERHLWEKIYKK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R  G+G+      L  L + Y + EA + A E  + ++  A  +SV++A+ERGA+ 
Sbjct: 388 SGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAYRSSVQMAKERGAFK 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F         F    I  L E                EL + +   G RN  C+ IAPT
Sbjct: 448 IFDAEREKNNPF----INRLREADP-------------ELYENMVKYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEA--MIS 822
            T + +   +  I+P +  +Y  +  ++ +   V+   ++E     ++  ++        
Sbjct: 491 GTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETGDAFEEYIVYHHKFLTWM 550

Query: 823 DLKYHDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +  +D      +   D+L        ATA ++D +  ++     QKW+D + S+ + L 
Sbjct: 551 KINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               ++L + +Y +AW  G K     R  S + V  S     + K   +P   P  +   
Sbjct: 611 NNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMISVKN--EKKQPELPCKSPEVTEKR 668

Query: 938 LGIPSS 943
             +   
Sbjct: 669 PQVLEC 674


>gi|86158906|ref|YP_465691.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775417|gb|ABC82254.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 595

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/637 (25%), Positives = 265/637 (41%), Gaps = 78/637 (12%)

Query: 292 AFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSS 348
                   +L  RY L   G   IE P+A F RVA  +A  E    +   A  F   +++
Sbjct: 3   RLGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEAPAARALWAERFEARMAA 62

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
              + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R
Sbjct: 63  LELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLR 122

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++ 
Sbjct: 123 PRGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRA 182

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G       + N +   PD   +   +   W L  P                        
Sbjct: 183 AG-----LENFNISVAAPDALFQAAARGEPWALRHP------------------------ 213

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V R++ A AL  ++    + +G P + F D     +P   +G   + N C E 
Sbjct: 214 ---RGGAVVREVDAGALLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQ 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         C LGS+NL       + D+++L + +R  VR+LD+V+++N   + +  +
Sbjct: 271 PLLPFE----ACTLGSVNLARFERGGRVDHERLGACVREGVRLLDDVLEVNVWPLPQIAE 326

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+
Sbjct: 327 ISRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAF 386

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             F  S   + G  P                                    RN+    IA
Sbjct: 387 PGFASSAPARAGGRP-----------------------------------RRNATVTTIA 411

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T+A I G S  I+P +   YV+  +           +   +                
Sbjct: 412 PTGTLAIIAGCSSGIEPLFALTYVRHALGDAALPEEHPALG--RALLAAGAEAALPAVRA 469

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            G    +  +P+ + ++ ATA ++ P   +   +  Q+ +D   S  + L    + + + 
Sbjct: 470 AGRARGVAGVPEAVARVFATAHDVAPEAHVRMQAAFQRHVDNGVSKTINLPRTATVEDVA 529

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             YR A+ +G K     R  S       +    +G+L
Sbjct: 530 GAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|167764850|ref|ZP_02436971.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
 gi|167697519|gb|EDS14098.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
          Length = 845

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/719 (22%), Positives = 285/719 (39%), Gaps = 113/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKVYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNALTSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  +                            ++ISA  LW+K++   +++  
Sbjct: 232 FVQQYPIDADE------------------------PLFKKEISATDLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E A++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFAEKVHQTVALSAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E                EL + +K  G RN  C+ 
Sbjct: 444 GAFEVYDSEREKNNPF----INRLREADP-------------ELYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDANVHVDFVDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W +A   D   H  +   ++ +        AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMQAQGYDPAKH-YTQDEVDALVQKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     ++L + +Y +AW  G K     R  S + V  ST K  D K    P   P
Sbjct: 606 TINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKK--DKKEELPPCKPP 662


>gi|198275618|ref|ZP_03208149.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
 gi|198271247|gb|EDY95517.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
          Length = 883

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/706 (20%), Positives = 281/706 (39%), Gaps = 101/706 (14%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQ 318
            + +    + +    +D  Y    L+Y   F  + L  ++  ++Y +  + G+  E  P+
Sbjct: 29  NKLIHIITVEKKTYSYDEAY-NASLEY---FKGDELAARVWVNKYAVKDSFGNIYEKSPE 84

Query: 319 AFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFL 373
               R+A  +A  E +      A E ++LL  F ++    S  T   +  +   LS+CF+
Sbjct: 85  DMHWRIANEVARIEAKYPNAISAQELFDLLDHFKYIVPQGSPMTGIGNDYQIASLSNCFV 144

Query: 374 TTVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
             +    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++ 
Sbjct: 145 IGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMER 204

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM
Sbjct: 205 YSNSTREVAQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKLDDEFM 259

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   +   +T   P +  +                          V ++I A ALW+K++
Sbjct: 260 QAAVEGKPYTQQYPIDSPN------------------------PMVSKEIDASALWKKIV 295

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
              +++  P + F D     S       +    + T             C L +INL ++
Sbjct: 296 HNAWKSAEPGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSY 355

Query: 611 FAN-----NQFDYDKLASTIRTAVRVLDNVID------------------------INCH 641
             N       FD++     +  A R++D++ID                           H
Sbjct: 356 VVNPFTPEAYFDFELFKKHVALAQRIMDDIIDLELEKIECILEKIDSDPESMEVKGSERH 415

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             EK    +   R  G+G+      L  + + Y + EA E +++  + I+  A  +SV +
Sbjct: 416 LWEKIYHKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEKVHKTIALEAYRSSVNM 475

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ERGA+  +         F    I  L +                EL + ++  G RN 
Sbjct: 476 AKERGAFEIYDAEREKNNPF----INRLKDADP-------------ELYEEMRKYGRRNI 518

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLW 816
            C+ IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E     ++  ++
Sbjct: 519 ACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDANVHVDFVDETGDAFEEYVVF 578

Query: 817 DEAMISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               ++ +K +        +   I+ + +      AT+ ++D +  ++   R QKW+D +
Sbjct: 579 HHKFLTWMKINGYDPDKRYTQEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHS 638

Query: 871 QSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            S+ + L     + L + +Y +AW  G K     R  S   V  ST
Sbjct: 639 ISVTINLPNNVSEDLVNQLYVEAWRSGCKGCTVYRDGSRAGVLIST 684


>gi|220916577|ref|YP_002491881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954431|gb|ACL64815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/637 (26%), Positives = 264/637 (41%), Gaps = 78/637 (12%)

Query: 292 AFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSS 348
                   +L  RY L   G   IE P+A F RVA  +A  E    +   A  F   +++
Sbjct: 3   RLGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEHPAARALWAERFEARMAA 62

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
              + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R
Sbjct: 63  LELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLR 122

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++ 
Sbjct: 123 PRGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRA 182

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G       + N +   PD       ++ GW L  P                        
Sbjct: 183 AG-----LENFNISVSAPDALFHAAARSGGWALRHP------------------------ 213

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V R++ A  L  ++    + +G P + F D     +P   +G   + N C E 
Sbjct: 214 ---RGGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQ 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
            L         C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  +
Sbjct: 271 PLLPFE----ACTLGSVNLARFERGGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAE 326

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+
Sbjct: 327 ISRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAF 386

Query: 709 SSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
             F  S   + G  P                                    RN+    IA
Sbjct: 387 PGFASSAPARSGGRP-----------------------------------RRNATVTTIA 411

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T+A I G S  I+P +   YV+  +           +    +               
Sbjct: 412 PTGTLAIIAGCSSGIEPLFALTYVRHALDDAALPEEHPALGRALRAA--GAEAALPAVRA 469

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            G    +  +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S + + 
Sbjct: 470 AGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVEDVA 529

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             YR A+ +G K     R  S       +    +G+L
Sbjct: 530 CAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|260909524|ref|ZP_05916227.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636372|gb|EEX54359.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 854

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/686 (22%), Positives = 274/686 (39%), Gaps = 104/686 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
              A  L Y   FA + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +  
Sbjct: 11  EAFAAALDY---FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYP 67

Query: 337 K--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
               A E Y LL  F ++    +         Q   LS+CF+  +    D    I    +
Sbjct: 68  NPLSAKEVYELLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVVGLDGDADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P    
Sbjct: 187 MLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDNFMQAAVDDKPYVQQFP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                +    +V ++ISA ALW K++   +++  P + F D   
Sbjct: 239 --------------------INSDNPEVEKEISAKALWDKIVHNAWQSAEPGVLFWDTIL 278

Query: 569 IRSPQQHVGVVH----SSNLCTEITLNSSSEETAVC-NLGSINLLAHFANNQFDYDKLAS 623
             S       +     S+N C EI L        +C NL S  +        FD+DK A 
Sbjct: 279 RESIPDCYADLGFTTVSTNPCGEIPLCPYDSCRLLCVNLFSYVVNPFTKEAYFDFDKFAK 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            +  A RV+D+++D                           H  EK K+ +   R  G+G
Sbjct: 339 HVAIAQRVMDDIVDLELEKIDLIMEKIKDDPQSSEVKGAEYHLWEKIKRKSSMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  L + Y + EA +++    + ++  A  +SV +A+ERGA+  F        
Sbjct: 399 ITAEGDMIAALGLRYGTQEATDLSVSVHKCLAIAAYRSSVVMAKERGAFEVFDAKREAAN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F    I  L E                 L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PF----ILRLKEADP-------------SLYNDMVAYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN----- 833
             I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+ D    N     
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHKKFMDWMKANGFDTE 559

Query: 834 -------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
                  I+ I +      ATA ++D +  ++     QKW+D + S+ + L     + L 
Sbjct: 560 KRYTQEEIDAIVEQSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSV 911
           + +Y +AW  G K     R  S + V
Sbjct: 620 NRLYVEAWRSGCKGCTIYRDGSRSGV 645


>gi|332877996|ref|ZP_08445726.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683958|gb|EGJ56825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 845

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/726 (21%), Positives = 281/726 (38%), Gaps = 103/726 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + E    +D       L+Y   F  + L  ++  ++Y +  + G   E  P+    R+A 
Sbjct: 1   MKEKTYSYDEA-FEAALQY---FKGDELAARVWVNKYSMKDSYGHIYEVSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +A  E + E   +A E + LL  F ++    +       + Q   LS+CF+  +    D
Sbjct: 57  EIARIENKYENPLKAEEIFGLLDHFKYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGQAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM    +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDAEAFIDAKMTEG----KVTGANVSVKIDDEFMHAAIEGQS 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + S                           V + ISA  LW+K++   +++  
Sbjct: 232 YTQQYPIDSS------------------------SPMVAKNISAQDLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL A+  N     
Sbjct: 268 PGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYAYVVNPFTPE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD+D     ++ A R++D++ID                           H  EK  K 
Sbjct: 328 AYFDFDLFKKHVQLAQRLMDDIIDLELEKIEMILQKIDADPESEEVKGTERHLWEKIYKK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R  G+G+      L  L + Y + EA + A E  + ++  A  +SV++A+ERGA+ 
Sbjct: 388 SGQGRRTGVGITAEGDMLAALGLRYGTQEATDFAVEVHKTVALQAYRSSVQMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F         F    I  L E                EL + +   G RN  C+ IAPT
Sbjct: 448 IFDAEREKNNPF----INRLREADP-------------ELYENMVKYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEA--MIS 822
            T + +   +  I+P +  +Y  +  ++ +   V+   ++E     ++  ++        
Sbjct: 491 GTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDPEVHIDFIDETGDAFEEYIVYHHKFLTWM 550

Query: 823 DLKYHDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +  +D      +   D+L        ATA ++D +  ++     QKW+D + S+ + L 
Sbjct: 551 KINGYDTEKRYTQEEIDELVARSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               ++L + +Y +AW  G K     R  S + V  S     + K   +P   P  +   
Sbjct: 611 NNVDEELVNQLYVEAWRSGCKGCTIYRDGSRSGVMISVKN--EKKQPELPCKSPEVTEKR 668

Query: 938 LGIPSS 943
             +   
Sbjct: 669 PQVLEC 674


>gi|300726805|ref|ZP_07060235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
 gi|299775918|gb|EFI72498.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
          Length = 861

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/724 (20%), Positives = 278/724 (38%), Gaps = 105/724 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +  + M  FD       LKY   F  + L  ++  ++Y +  + G   E  P     R+A
Sbjct: 1   MEEQKMYTFDEA-FEESLKY---FDGDQLAARVWVNKYAMKDSFGHIYEKSPLEMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    +         Q   LS+CF+  +    
Sbjct: 57  NEVARIEKKYKNPLSAQEIFDLLDHFRYIVPAGSPMTGIGNTHQVASLSNCFVIGLDGDA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPAGSPVNNSALTSTGIVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+   ++ 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDEFMRCAIEDE 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                               V ++ISA  LW K++   +++ 
Sbjct: 232 PYRQQWP------------------------IHDVNPSVVKQISARKLWDKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P I F D     S       +    + T             C L SINL ++  N    
Sbjct: 268 EPGILFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSINLYSYVENPFTP 327

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              F+YD     ++ A R++D+++D                           H  EK K+
Sbjct: 328 QASFNYDLFKKHVQLAQRIMDDIVDLEMEKIDLIMNKIDKDPQLEEVKGAEYHLWEKIKR 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA + +    + ++ +A  +SV LA+ERGA+
Sbjct: 388 KSSLGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHKTLALNAYRSSVNLAEERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +  +   +  F    I  + E                 L   +   G RN  C+ IAP
Sbjct: 448 EIYDANREAKNPF----ILRIKEADP-------------ALYADMVKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++     V+   V+E+    ++  ++ +  +  
Sbjct: 491 TGTTSIMTQTTSGIEPVFMPVYKRRRKVNPTDKDVHVDFVDEVGDSFEEYIVYHKKFVEW 550

Query: 824 LKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +K +        S   I  +        ATA ++D +  ++     QKW+D + S+ + L
Sbjct: 551 MKINGFDVNKRYSQDEINELVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNL 610

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV----EKSTLKGVDGKLNAVPVTDPN 932
                + L + +Y +AW  G K     R  S + V     KS  K  + +  A P     
Sbjct: 611 PNDVDESLVNRLYVEAWKSGCKGCTIYRDGSRSGVMISASKSEKKEAEKQGTADPKEQEK 670

Query: 933 SSTH 936
               
Sbjct: 671 DDVE 674


>gi|157363198|ref|YP_001469965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
 gi|157313802|gb|ABV32901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
          Length = 839

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/704 (25%), Positives = 301/704 (42%), Gaps = 114/704 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE-- 332
           DL+     ++  ++       ++IL +RYF+    G  IE        RVA  +A  E  
Sbjct: 4   DLIEKYKKIQPSQN------AVRILTERYFIKTPAGEFIEKSWHDVAHRVARVVASAELI 57

Query: 333 --------TEKEKR------AVEFYNLLSSFHFMCSTPTLFNSGT--------------- 363
                   ++ EK         EF++LL+S  F+ ++PTLFNSG                
Sbjct: 58  NNPALENLSKSEKLDYIKLLEKEFFDLLASRIFIPNSPTLFNSGMGVDYELLYKPLEQME 117

Query: 364 ------------RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
                           LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G
Sbjct: 118 LDDYSKIIQMRNHLHMLSACFVVPVEDSIDGIFTAVKEYALITKAGGGIGSNFSSLRPNG 177

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + + GT+GK+ G I F+ V N     V QG +R+GA+   L   H D+ +F+  +K   D
Sbjct: 178 SFVAGTHGKASGPISFMHVFNSAVSVVEQGYRRRGALMGILNIDHPDIMDFISAKKGN-D 236

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             +     N +  IP                                E     YER    
Sbjct: 237 GEKVLRFFNISVGIPM-----------------------------RREELLRIYERDGTI 267

Query: 532 G----EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +    ++I    + +KM    +ETG P + F    N          + S+N C E
Sbjct: 268 RLNHSKWHGEKEIKVREIIQKMAQSAWETGDPGMVFLGEMNRYYALYPHKEIISTNPCGE 327

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           I           CNLGSI+L   +  N  D+D L    R AVR LDNVID+N   I+K  
Sbjct: 328 I----GLGAYEACNLGSIDLAKLYTQNGVDWDALEKATRIAVRFLDNVIDVNVFPIDKIS 383

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K+    R +GLG+MGF   L+ + IPY S EA  +A   M F++ H+   S +L +E+G 
Sbjct: 384 KAVKESRRLGLGIMGFADLLYKMDIPYDSEEARRLAKNIMAFMALHSHEESSKLGEEKGN 443

Query: 708 YSSFKGSLWDQG----VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           +  F+ S +        F +D      E+ +                + V     RN   
Sbjct: 444 FPLFEQSRYHTEDDFVPFSMDESDYDEEIFEHF--------------RNVAPKFKRNVAV 489

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMIS 822
           +AIAPT +I+NI   S  ++P++   YV+     +       F VNE+ ++ L  E +I+
Sbjct: 490 LAIAPTGSISNIADTSSGLEPNFLLAYVRYVNKQNSDEREPLFYVNEVLKQKL-PEDLIN 548

Query: 823 DLK---YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LD 878
            +K     DG++ ++E I +++K++   + +I P+  +      Q ++D   S  +   +
Sbjct: 549 SIKDKLVEDGTLKHLE-IDEEIKRVFVVSHDIKPIDHLLMQEAFQCYVDNNISKTINLPN 607

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +   +  +Y +A    ++     R  S  +   ++ K +  K
Sbjct: 608 SATVDDVVEVYIEALKHKIRGLTIYRDGSLQTQVLTSTKSLKTK 651


>gi|302347121|ref|YP_003815419.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
 gi|302150496|gb|ADK96757.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
          Length = 866

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/724 (21%), Positives = 294/724 (40%), Gaps = 105/724 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +  +    FD  + A+ L Y   F  + L  ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   METKQTYSFDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    S  T   +  +   LS+CF+  +    
Sbjct: 57  NEIARIENKYKNPLTAQEVFDLLHHFKYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++ 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDK 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                         +  E  V ++ISA  LW K++   +++ 
Sbjct: 232 TYVQQFP------------------------TNSSEPSVTKEISAKELWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L S+NL ++  +    
Sbjct: 268 EPGVLFWDTIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTD 327

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
             +FD +      + A R++D++ID                           H  EK KK
Sbjct: 328 HARFDMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKK 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+
Sbjct: 388 KSCQGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +     ++  F    I  L E   +             L + +K  G RN  C+ IAP
Sbjct: 448 EIYDAKREEKNPF----ILRLKEADGQ-------------LYEDMKKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++    ++ 
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTW 550

Query: 824 LKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           ++ +        S   I+ +        ATA ++D +  +      QKW+D + S+ + L
Sbjct: 551 MEVNGIDTQKKYSQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNL 610

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVPVTDPN 932
                ++L + +Y +AW  G K     R  S +    SV K      +  ++   V D N
Sbjct: 611 PNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDLN 670

Query: 933 SSTH 936
           S+  
Sbjct: 671 SAEE 674


>gi|254000336|ref|YP_003052399.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|313202290|ref|YP_004040948.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
 gi|253987015|gb|ACT51872.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|312441606|gb|ADQ85712.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
          Length = 714

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 61/655 (9%)

Query: 297 GLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH--FM 352
            L I   +Y L               + RVA  LA  E    KR+  +   L +     +
Sbjct: 21  SLDIWDKKYRLKTKQGDHIDADMDDTYKRVARALADAEETDAKRSFWYERFLWALRRGAI 80

Query: 353 CSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +     N+G +  +      +      + D + GI   + E  +  K   G+G +++ +
Sbjct: 81  PAGRITSNAGAQEHKPATSTINCTVSGIIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTL 140

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  ++
Sbjct: 141 RPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR 200

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----------DLYGKE 517
             G    R    N +  I   FM+ V  +A W L  P    + +           +  +E
Sbjct: 201 EAG----RLRQFNLSTLITKEFMEAVKADAEWKLAFPVTEKEANQDSLNLEDPTQVVWRE 256

Query: 518 FEIAYENYERQADRG-EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           + +  +   R++D     +V++ I A  LW  +++  ++   P     D  N  +     
Sbjct: 257 WPVKNKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFC 316

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
             + ++N C E  L         C LGS+NL             FD+++    + T  R+
Sbjct: 317 ENIRATNPCGEQPLPP----YGACLLGSVNLTKFVREPFTDKAWFDWEEYREVVATFTRM 372

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNV+++N   + + +      R  G+G +G  S L +L + Y    ++   +E  + ++
Sbjct: 373 LDNVVEVNGLPLPQQQAEIMRKRRHGMGYLGLGSTLTMLKMKYGDDASLTFTEEVTKIMA 432

Query: 692 FHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
                  VELA+E+G               L  +     D I L  +V+ ++ M   SR 
Sbjct: 433 EVGWQVGVELAEEKGPAPIMDEEFVVTADLLAKRPEMVKDGIKLGDKVKGKVLMGLYSRY 492

Query: 745 PW---DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM---S 796
                D+L+K++   G+R ++  +IAPT TI+       S  I+PS+ + Y ++ +    
Sbjct: 493 MQQFPDKLRKQIAKNGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYARNVIREGK 552

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMW 855
                V+ F    L  R+L            + S       P++ L +    +  I    
Sbjct: 553 KSKEKVDVFSYELLAYREL-----------INASAMPFSDKPEEQLPEYFMDSSTISAKA 601

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            ++  +  QKWID + S  + +           IY  A+  GLK     R     
Sbjct: 602 HVDIQAAAQKWIDSSISKTINVPTDYDFGDFKDIYLYAYEKGLKGCTTFRFNPEA 656


>gi|83722608|ref|YP_443886.1| ribonucleotide reductase subunit 1 [Papiine herpesvirus 2]
 gi|75905761|gb|ABA29293.1| UL39 [Papiine herpesvirus 2]
          Length = 986

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/646 (25%), Positives = 271/646 (41%), Gaps = 55/646 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFY----NL 345
                 + Y   I+G  +E     + R+A  LA            ++   +E +    N 
Sbjct: 347 SALKYEEFYLKKIDGWLLESVPQMYARIAGYLACHADLAGRVVFGRDASWLEMFTYFFNR 406

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
             +   + STP +   GTR P  SSC+L                ++ LA  +  +     
Sbjct: 407 FYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQ--------TRTAHSTLAAITQNVAPILA 458

Query: 406 PVRGLGAHIHGTNGKSQG--VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              G+G  +   N +     ++P LK  +    A N    R   V  YLE WH D+   L
Sbjct: 459 RSGGIGLCLQNFNDRPGNASLMPALKALDSIVAAYNDQSLRPTGVTVYLEPWHSDIMAVL 518

Query: 464 DLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGK 516
            ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLFS      L   +G+
Sbjct: 519 RMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFSHRGGMHLASFHGE 578

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y   E             +    +   ++     TG P++ FKD  N        
Sbjct: 579 EFERLYRCQEELGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAVNRHYIYDTQ 632

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R  V +++ +
Sbjct: 633 GAAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFARLRESVRACVLMVNIM 692

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +   A+
Sbjct: 693 IDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVMLLAAM 752

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            AS  L       +  FK S++  G F         + R            W+ L++ + 
Sbjct: 753 QASNALCFHGARPFREFKRSVFRAGRFH---WEGFPDARPRYEG------EWEMLRQSMM 803

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR- 813
             G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ L+ EL++  
Sbjct: 804 KHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLRELRETF 863

Query: 814 -DLWDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQA 870
                  +I  L     S+      +  D   +   TAFE D   LI+  + R  ++D +
Sbjct: 864 SGRRLNEVIDALDAKQWSVERALPCLAADHPLRRFKTAFEYDQELLIDLCADRAPYVDHS 923

Query: 871 QSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
           QSL L++ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 924 QSLTLHVTERADGTLPASSLVRLLVHAYKRGLKTGMYYCKVRKATN 969


>gi|91776891|ref|YP_546647.1| ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
 gi|91710878|gb|ABE50806.1| Ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
          Length = 719

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/656 (22%), Positives = 263/656 (40%), Gaps = 63/656 (9%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAF---FMRVAMGLALKETEKEKRAVEFYNLLSSFH-- 350
            L I   +Y L    GS I+  Q     + RVA  LA  E  +EKR++ F   L +    
Sbjct: 26  SLDIWDKKYRLKTKQGSFID--QDMDDTYKRVARALADVEETEEKRSLWFEKFLWALRRG 83

Query: 351 FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            + +     N+G +  +      +      V D + GI   + E  +  K   G+G +++
Sbjct: 84  AIPAGRITSNAGAQEHKPATSTINCTVSGIVEDSMDGILEKVHEAGLTLKAGCGIGYEFS 143

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  
Sbjct: 144 TLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDVTDFIKA 203

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV----------SDLHDLYG 515
           ++  G    R    N +  I   FM+ V  +A W L  P              D H +  
Sbjct: 204 KREAG----RLRQFNLSTLITREFMEAVKTDAEWKLAFPVTAREAEQDKLDLDDEHAVVW 259

Query: 516 KEFEIAYENYERQADRG-EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           +E+ +  +   R++D     +V++ I A  LW  +++  ++   P     D  N  +   
Sbjct: 260 REWPVKDKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVNEMNNNW 319

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
           +   + ++N C E  L         C LGSINL             FD+D+    +    
Sbjct: 320 YCENIRATNPCGEQPLPP----YGACLLGSINLTKFVREPFTDKAYFDWDEYREVVAIFT 375

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   +++ +      R  G+G +G  S L +L + Y   ++++  +E  + 
Sbjct: 376 RMLDNVVEINGLPLQQQRDEIARKRRHGMGYLGLGSTLTMLRMKYGEADSLQFTEEVTKV 435

Query: 690 ISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++       V+LA+E+G     +            +     D I L  +V+ ++ M R S
Sbjct: 436 MAEVGWEVGVQLAEEKGPAPIMEEEFEITPDLLSKRPEMAKDGIKLGDKVKGKVLMGRYS 495

Query: 743 RLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM-- 795
           R        L+KR+   G R S+  +IAPT TI+       S  I+PS+ + Y ++ +  
Sbjct: 496 RYLQQFPAALRKRIAETGARFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIRE 555

Query: 796 -SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                  V+ F    L  R L +   +        S     ++P+        +  I   
Sbjct: 556 GKKSKEKVDVFSYELLAYRALVNPDAMPF------SDQAETQLPE----YFMDSSTIPAK 605

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             ++  +  QKWID + S  + +           IY  A+  GLK     R     
Sbjct: 606 AHVDIQAAAQKWIDSSISKTINVPTDYDFNDFKDIYLYAYEKGLKGCTTFRFNPEA 661


>gi|57234945|ref|YP_180992.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57225393|gb|AAW40450.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 585

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/633 (26%), Positives = 265/633 (41%), Gaps = 83/633 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G+  E  +  F RVA  +A  E       +    A EFY +++ F F+
Sbjct: 10  VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFL 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G     LSSCF+  V D + GI  A+ E  ++ +Y GG G  +  +R    
Sbjct: 70  PNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   +  + G +  + V ++    + Q G R G   A L   H D+ +F+  +    D+
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
              + +      + D F+++V +   + L +P                            
Sbjct: 186 GSHSANFGINIALTDDFIRKVRRGEDYELVNPRTG------------------------- 220

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++ C    L  
Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278

Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               T    LG+INL           + DY +L   I  AVR LD+V+++N +   + +K
Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEK 334

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IGLG MGF   L  L I Y S EAV  ADE M F+   A  A+ ELA ERGA+
Sbjct: 335 AARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAACQATEELALERGAF 394

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS++ Q           A+ R                         RN+ C+    
Sbjct: 395 PAFAGSIYAQ---------KGAKPR-------------------------RNATCLTFTN 420

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + I   S  I P Y  + V++ + G     +N       ++R  +  A+I  L   
Sbjct: 421 TGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKL-LT 479

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
             S  N   IP+D +++  TA +I P W I   +  QK+ D A S  +    + S + + 
Sbjct: 480 GESPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPADASVEDIA 539

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++ +A  +GLK     R  S       T    
Sbjct: 540 DLFLKAHELGLKGVTAYRDSSRELQVLCTGADC 572


>gi|284032582|ref|YP_003382513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
 gi|283811875|gb|ADB33714.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
          Length = 960

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 40/652 (6%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            L+ L DR  +       E  Q        G      + E    E   +L   +F  ++P
Sbjct: 101 SLKQLLDR-VVKTYRKAGE--QH-------GYFATAADAEVFEHELTWMLLHQYFSFNSP 150

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R     + 
Sbjct: 151 VWFNVGTSSPQQVSACFILAVDDSMDSILNWYKEEGLIFKGGSGAGLNLSRIRSSKELLQ 210

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +    D  R
Sbjct: 211 SSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKMREEDKIR 270

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +          QNA  ++   DE     +  G+    A         R +
Sbjct: 271 VLRDAGYDMDLGGRDITSVQYQNANNSVRVTDEFMRAVEEKGEFGLRA---------RLD 321

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V   + A  L+ K+    +    P + + D  N        G + +SN C+E     +
Sbjct: 322 GSVIETVDARELFDKISHAAWACADPGLQYDDTINDWHTTPETGRITASNPCSEYMHLDN 381

Query: 594 SEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           S     CNL S+NL+    ++  FD +K    +   +  +D  I       E   ++   
Sbjct: 382 SS----CNLASLNLMKFLRDDDLFDSEKFVKAVELIITAMDISICFADFPTEAIGETTRA 437

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +G+G     + L      Y S     +A      ++  +   S ELA   G Y  F+
Sbjct: 438 YRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAGIVGPYDGFE 497

Query: 713 GSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +                 +R     +  + + +   W ++       G RN+    +AP
Sbjct: 498 RNKDAHTRVMRKHAAANDAIRTIHEIDKDVQKAATAAWQDVLTLGAKNGWRNAQASVLAP 557

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI  +    +  I+P +  +  K  + G    + +  V    +   + E  I  +  +
Sbjct: 558 TGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTVPRALRLHGYTEETIEAIVEY 617

Query: 828 DGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
               G++   P    +  +I  TA     I PM  +   +  Q ++  A S  + L E  
Sbjct: 618 ISEHGHVVDAPGLKPEHYEIFDTAMGERAIKPMGHVRMMAAAQPFLSGAISKTVNLPETA 677

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN-AVPVTDP 931
           + +++  +Y Q W +GLK     R         +  K        A PV + 
Sbjct: 678 TVEEIADVYFQGWKLGLKALAVYRDNCKVGQPLADAKAKKATEAVAEPVVEK 729


>gi|282880763|ref|ZP_06289459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305297|gb|EFA97361.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
          Length = 861

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/722 (20%), Positives = 282/722 (39%), Gaps = 102/722 (14%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
               F+  Y    L+Y   F+ + L  ++  ++Y +  + G   E  P+    R+A  + 
Sbjct: 5   KTYSFEEAY-QEALQY---FSGDELAARVWVNKYAMKDSFGHIYEKSPKDMHWRIANEIV 60

Query: 330 LKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLY 381
             E + E    A E + LL  F ++    +         Q   LS+CF+  +    D   
Sbjct: 61  RIENKYENPLSAQEVFELLDHFKYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYG 120

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q 
Sbjct: 121 AIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQD 180

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  I D FM+    +  +  
Sbjct: 181 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDEFMQAAIDDKPYVQ 235

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  E  + ++I+A +LW K++   +++  P +
Sbjct: 236 QFP------------------------VDSDEPSMKKEIAAKSLWEKIVHNAWKSAEPGV 271

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
            F D     S       +    + T             C L SINL ++  N       F
Sbjct: 272 LFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSINLYSYVVNPFTSDAYF 331

Query: 617 DYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKSNHT 652
           D +K A  ++ A R++D+++D                           H  EK K+ +  
Sbjct: 332 DMEKFAKHVQIAQRLMDDIVDLELEKIDCILEKIKLDPQSEEVKETERHLWEKIKRKSGQ 391

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R  G+G+      L  + + Y + EA E +    + ++ +A  +SV +AQERGA+  F 
Sbjct: 392 GRRTGVGITAEGDMLAAMGLRYGTKEATEFSVNIHKTLALNAYRSSVTMAQERGAFEVFD 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                   F +                        +L + ++  G RN  C+ IAPT T 
Sbjct: 452 AKREANNPFLLRIKEADP-----------------QLYEDLQKYGRRNIACLTIAPTGTT 494

Query: 773 ANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYH 827
           + +   +  I+P +  +Y  +  ++   T V+   V+E+    ++  ++ +  +  +K +
Sbjct: 495 SLMTQTTSGIEPVFMPVYKRRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFLEWMKVN 554

Query: 828 D------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                   +   I+++ +      ATA ++D +  ++     QKW+D + S+ + L    
Sbjct: 555 GIDTTKRYTQEEIDQLVEQSPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPHDV 614

Query: 882 GKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
            + L + +Y +AW  G K     R  S   V  S  K  D K         N     + +
Sbjct: 615 DEALVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSKK-DTKEEPAEQAKDNDMEERVKM 673

Query: 941 PS 942
           P 
Sbjct: 674 PC 675


>gi|288802022|ref|ZP_06407463.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
 gi|288335457|gb|EFC73891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
          Length = 866

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/724 (21%), Positives = 295/724 (40%), Gaps = 105/724 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +  +    FD  + A+ L Y   F  + L  ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   METKQTYSFDEAFQAS-LAY---FGGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    S  T   +  +   LS+CF+  +    
Sbjct: 57  NEIARIENKYKNPLTAQEVFDLLDHFRYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++ 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAVVEDK 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                         +  E  V ++ISA ALW K++   +++ 
Sbjct: 232 TYVQQFP------------------------TNSSEPSVTKEISAKALWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L S+NL ++  +    
Sbjct: 268 EPGVLFWDTIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTD 327

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
             +FD +      + A R++D++ID                           H  EK KK
Sbjct: 328 HARFDMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKK 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+
Sbjct: 388 KSCQGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +     ++  F    I  L E   +             L + +K  G RN  C+ IAP
Sbjct: 448 EIYDAKREEKNPF----ILRLKEADGQ-------------LYEDMKKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++    ++ 
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTW 550

Query: 824 LKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           ++ +        S   I+ +        ATA ++D +  +      QKW+D + S+ + L
Sbjct: 551 MEVNGIDTKKKYSQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNL 610

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVPVTDPN 932
                ++L + +Y +AW  G K     R  S +    SV K      +  ++   V D N
Sbjct: 611 PNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDLN 670

Query: 933 SSTH 936
           S+  
Sbjct: 671 SAEE 674


>gi|270307517|ref|YP_003329575.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153409|gb|ACZ61247.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 585

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/633 (26%), Positives = 265/633 (41%), Gaps = 83/633 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFM 352
           +L  RY     +G+  E  +  F RVA  +A  E       +    A EFY +++ F F+
Sbjct: 10  VLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYCMMTGFEFL 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G     LSSCF+  V D + GI   + E  ++ +Y GG G  +  +R    
Sbjct: 70  PNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFAFDAIRPEDD 129

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   +  + G +  + V ++ A  + Q G R G   A L   H D+ +F+  +    D+
Sbjct: 130 PVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFIRAK----DE 185

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
              + +      + D F+++V   A + L +P                            
Sbjct: 186 GNHSANFGINIALTDSFIQKVRLGADYELVNPRTG------------------------- 220

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++ C    L  
Sbjct: 221 --RVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLLP 278

Query: 593 SSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
               T    LG+INL           + DY +L   I  AVR LD+V+++N +   + +K
Sbjct: 279 YESAT----LGTINLSGMLLKEGNCCRVDYPRLGGLITKAVRFLDDVLEVNRYPTAEVEK 334

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IGLG MGF   L  L I Y S +AV  ADE M F+   A  A+ ELA ERGA+
Sbjct: 335 AAKATRKIGLGFMGFAEMLIKLGIRYDSADAVSAADELMAFVKEAACQATEELALERGAF 394

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS++ +           A+ R                         RN+ C+    
Sbjct: 395 PAFAGSIYAK---------RGAKPR-------------------------RNATCLTFTN 420

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + I   S  I P Y  + V++ + G     +N       ++R  +  A+I  L   
Sbjct: 421 TGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIEKL-LT 479

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
             S  N   IP+D +++  TA +I P W I   +  QK+ D A S  +      S + + 
Sbjct: 480 GESPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPANASVEDIA 539

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++ +A  +GLK     R  S  S    T    
Sbjct: 540 DLFLKAHELGLKGVTAYRDSSRESQVLCTGADC 572


>gi|38707873|ref|NP_944991.1| Ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage Felix 01]
 gi|33340476|gb|AAQ14827.1| putative ribonucleoside triphosphate reductase alpha chain
           [Enterobacteria phage Felix 01]
          Length = 744

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/803 (21%), Positives = 304/803 (37%), Gaps = 100/803 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDVC 62

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                +E  Y+ +  R LL  + +E      K P   T          +       G+  
Sbjct: 63  VDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT----------FVKNMERAGLWE 110

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRV 324
           ++        +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM +
Sbjct: 111 KM---DYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMGM 167

Query: 325 AMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           AM    K+ +  +    ++ Y  LS       TP L          +SC L    D    
Sbjct: 168 AMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAES 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A  Q  
Sbjct: 228 LGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEANKQ-K 285

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W LF
Sbjct: 286 SRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLLF 345

Query: 503 SPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           S  +   L+D++      EF +A  +             R++ A  + +  +   + TG 
Sbjct: 346 SYKDAPKLYDMFYTASADEFAMAVGHAV-----HSGVKHRRVKAREIAKLFIQQRYATGR 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------SEETAVCNL 602
            +  F +  N          +  SNLC EI L                     E A+C L
Sbjct: 401 VYPFFTNNANTH--TPFKEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFL 458

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S+         +   D+ A     A+ ++D+VID+  +     +      R++G+GL  
Sbjct: 459 ASL------VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTN 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L   ++ Y+S        E  E  S++   AS+ LA+ERG     K + + +G  P
Sbjct: 513 VAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVP 572

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQS 781
             +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +  
Sbjct: 573 PKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  K + +G+   +                                    ++L
Sbjct: 629 LYPIRDFILTKKSATGNVLFIVPDY--------------------------------EEL 656

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMG 896
           K ++  A++ID   +I+  +  QK+  QA S + Y+D    KK+           A  +G
Sbjct: 657 KYVYEIAWDIDTFDMIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVG 716

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YYL SR    V KS L+  
Sbjct: 717 MKTMYYLNSR--IGVGKSALQDA 737


>gi|329957666|ref|ZP_08298141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
 gi|328522543|gb|EGF49652.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
          Length = 845

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/719 (22%), Positives = 286/719 (39%), Gaps = 113/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E ++LL+ F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNALTSEELFDLLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGTP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P + ++                            ++ISA  LW+K++   +++  
Sbjct: 232 FVQQYPIDATE------------------------PVFKKEISAADLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E A++  + ++  A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFAEKVHKTVALSAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E                EL + +K  G RN  C+ 
Sbjct: 444 GAFEVYDSEREKNNPF----INRLREADP-------------ELYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ +   V+   V+E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDANVHIDFVDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   D      +   I+ + +      AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEAEGYD-PAKRYTQDEIDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     ++L + +Y +AW  G K     R  S + V  S     + K    P   P
Sbjct: 606 TINLPNDVDEELVNRLYIEAWKSGCKGCTVYRDGSRSGVLISA--KSEKKEELPPCKPP 662


>gi|269975272|gb|ACZ55496.1| ribonucleoside triphosphate reductase alpha chain [Staphylococcus
           phage SA1]
          Length = 744

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/803 (21%), Positives = 304/803 (37%), Gaps = 100/803 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDVC 62

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                +E  Y+ +  R LL  + +E      K P   T          +       G+  
Sbjct: 63  VDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT----------FVKNMERAGLWE 110

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRV 324
           ++        +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM +
Sbjct: 111 KM---DYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMGM 167

Query: 325 AMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           AM    K+ +  +    ++ Y  LS       TP L          +SC L    D    
Sbjct: 168 AMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAES 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A  Q  
Sbjct: 228 LGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEANKQ-K 285

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W LF
Sbjct: 286 SRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLLF 345

Query: 503 SPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           S  +   L+D++      EF +A  +             R++ A  + +  +   + TG 
Sbjct: 346 SYKDAPKLYDMFYTASADEFAMAVGHAV-----HSGVKHRRVKAREIAKLFIQQRYATGR 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------SEETAVCNL 602
            +  F +  N          +  SNLC EI L                     E A+C L
Sbjct: 401 VYPFFTNNANTH--TPFKEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFL 458

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S+         +   D+ A     A+ ++D+VID+  +     +      R++G+GL  
Sbjct: 459 ASL------VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTN 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L   ++ Y+S        E  E  S++   AS+ LA+ERG     + + + +G  P
Sbjct: 513 VAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMQFTKYPEGWVP 572

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQS 781
             +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +  
Sbjct: 573 PKTANRKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  K + +G+   +                                    ++L
Sbjct: 629 LYPIRDFILTKKSATGNVLFIVPDY--------------------------------EEL 656

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMG 896
           K ++  A++ID   LI+  +  QK+  QA S + Y+D    KK+           A  +G
Sbjct: 657 KYVYEIAWDIDTFDLIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVG 716

Query: 897 LKTTYYLRSRSATSVEKSTLKGV 919
           +KT YYL SR    V KS L+  
Sbjct: 717 MKTMYYLNSR--IGVGKSALQDA 737


>gi|297519662|ref|ZP_06938048.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
          Length = 513

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/549 (26%), Positives = 242/549 (44%), Gaps = 65/549 (11%)

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL  
Sbjct: 1   KRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHA 60

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP +V  ++   
Sbjct: 61  HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKP 120

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             +  I+    E  AD    K +  ++A   ++++  + FE+G+P+I ++D  N  +   
Sbjct: 121 FADVAISQHYDELVADERIRKKY--LNARDFFQRLAEIQFESGYPYIMYEDTVNRAN--P 176

Query: 575 HVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLA 622
             G ++ SNLC+EI   +S+ E               CNLGS+N+      +  D    A
Sbjct: 177 IAGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIA-----HTMDSPDFA 231

Query: 623 STIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            T+ TAVR L  V D++   ++   +  N    AIGLG M     L    I Y SPEA++
Sbjct: 232 RTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALD 291

Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEV 732
             +     I++HA+  S+ LA+ER   ++ FK S +  G +    +          + E+
Sbjct: 292 FTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGEL 351

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++
Sbjct: 352 FTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIR 411

Query: 793 SN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               +G       F+ NE                                  ++  A+EI
Sbjct: 412 KEGKTGRVYYPAPFMTNE-------------------------------NLALYQDAYEI 440

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    
Sbjct: 441 GAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIRLRQMA- 499

Query: 911 VEKSTLKGV 919
           +E + ++G 
Sbjct: 500 LEGTEIEGC 508


>gi|225164910|ref|ZP_03727127.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800487|gb|EEG18866.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 382

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/382 (49%), Positives = 254/382 (66%), Gaps = 12/382 (3%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           CTEITLN+S +ETAVCNLGSI L  H   +   D+ KL  TIRTAVR LDNVIDIN +  
Sbjct: 1   CTEITLNTSKDETAVCNLGSIILETHLHPDGSLDHAKLRDTIRTAVRALDNVIDINFYPT 60

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             A  SN  HR IGLG+MG  +AL+     +ASPEAVE  DE+ME I++HA  AS +LA 
Sbjct: 61  RAAGTSNRRHRPIGLGVMGLANALYQRGHAFASPEAVEFNDEAMEAIAYHAYEASSDLAA 120

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG YSS++GS W +G+ P D++ LL + R   + + R  +L W  L+ ++   GMRNSN
Sbjct: 121 ERGTYSSYEGSKWHRGILPQDTLDLLEQERGIPVDVPRGGKLDWAPLRAKIAAQGMRNSN 180

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPTATI+NI   S  I+P+Y+NL+VKSN+SG+F ++N +LV +LK R+LW + M+ 
Sbjct: 181 VLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFVILNPWLVRDLKARNLWTQDMLD 240

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           +LKY DG + +IE IP DL++ + TAF ID  W+I +A+RRQKWIDQ+QS+NL+L  P  
Sbjct: 241 NLKYFDGELSDIESIPADLREKYRTAFGIDHQWVIAAAARRQKWIDQSQSVNLWLATPDL 300

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL---KGVDG--KLNAVPVTDPNSSTHS 937
           K L  +YR AW  GLKTTYYLR+  A+++EK+T+   K V G         + P    ++
Sbjct: 301 KTLSHMYRHAWHAGLKTTYYLRTLGASNIEKATVAVKKEVRGIASGTTPAASSPGVRAYT 360

Query: 938 LGIPSSCTSD-----TECEVCQ 954
                +C+ +      ECE CQ
Sbjct: 361 AEEKLACSIEAMRNGGECEACQ 382


>gi|294775362|ref|ZP_06740884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
 gi|294450819|gb|EFG19297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
          Length = 848

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/722 (21%), Positives = 283/722 (39%), Gaps = 115/722 (15%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
              D               F  + L  ++  ++Y +  + G+  E  P+    R+A  +A
Sbjct: 6   YTYDEAFEASLQY------FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVA 59

Query: 330 LKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLY 381
             E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D   
Sbjct: 60  RIEAKYKNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYG 119

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q 
Sbjct: 120 GIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQD 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       +  
Sbjct: 180 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQ 234

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  +    + I A ALW+K++   +++  P +
Sbjct: 235 QYP------------------------VDSDQPVFTKDIDASALWKKIVHNAWKSAEPGV 270

Query: 562 TFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            F D     S             S+N C EI L         C L +INL ++  N    
Sbjct: 271 LFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTK 326

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKK 648
              FD+D     +  A R++D++ID+                          H  EK  K
Sbjct: 327 EAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYK 386

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + EA E +++  + I+  A  +SV +A+ERGA+
Sbjct: 387 KSGQGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAF 446

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +         F    I  L E                EL + +K  G RN  C+ IAP
Sbjct: 447 AIYDSEREKNNPF----INRLKEADP-------------ELYEEMKKYGRRNIACLTIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E ++   K+ 
Sbjct: 490 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIVFHHKFV 547

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +    N            I+++ +      AT+ ++D +  ++   R QKW+D + S+ +
Sbjct: 548 EWMTVNGYDPTKRYTQEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTI 607

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P + 
Sbjct: 608 NLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTV 667

Query: 935 TH 936
             
Sbjct: 668 VE 669


>gi|162417878|ref|YP_001604552.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
 gi|162350850|gb|ABX84799.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
          Length = 548

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/537 (27%), Positives = 227/537 (42%), Gaps = 41/537 (7%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++DG++   L  AL+ S+  LI  E PNY +V AR  L K+R++              ++
Sbjct: 16  IFDGMTTCQLHEALVKSAADLISPETPNYLQVAARLNLFKIRKDAFG----------QYD 65

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               Y  +    +  GV    L +     ++  L   +K +RD  F Y     L  +Y +
Sbjct: 66  YPNFYN-HIVSNVSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLV 124

Query: 308 --HINGSRIEMPQAFFMRVAMGLALK------ETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
              + G+  E PQ  +M V M L            + +    FY++ S+F     TP + 
Sbjct: 125 QNRVTGAIYEGPQQLYMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMA 184

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              T   Q SSC L    D L GI  A            G+G  +  +R LG+ I     
Sbjct: 185 GVRTPTRQFSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEA 244

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
              GVIPFLK       + +QGG R GA  A+   WH++VE  L L+ N G +  R   +
Sbjct: 245 THTGVIPFLKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHL 304

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKV 536
           +    I  L  +R+  N   TLFSP +V  L+D +  +   FE  Y  YE      E   
Sbjct: 305 DYGVMINRLMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIR 360

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS--- 592
            + I AV L+  ++     TG  +I   D  N        +  VH SNLC EITL +   
Sbjct: 361 KKSIPAVDLFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPL 420

Query: 593 -----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 + E A+C L + NL A         D L      AV  LD+++D   + +  A+
Sbjct: 421 AFTDDPNGEIALCTLSAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAE 475

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                 R++G+G+  F   L      Y+     ++  E+ E I ++ + AS  LA+E
Sbjct: 476 IPAKARRSLGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEE 532


>gi|91791299|ref|YP_552249.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91701180|gb|ABE47351.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 858

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/664 (23%), Positives = 261/664 (39%), Gaps = 71/664 (10%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCS 354
            + +L ++Y      +  E+    F RVA G+A  E    +EK    F++ +        
Sbjct: 21  SIDVLLEKYAKGDEFTETEI----FARVAKGIAQAEQPELREKYERVFFDNMMRGAIGAG 76

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTP 406
                        L++CF+  V D + G        I+ AL+E A   +  GG+G D++ 
Sbjct: 77  RIMSAAGTGIKATLANCFVQPVGDAIQGVDTEGYPGIYEALREAAETMRRGGGVGYDFSR 136

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ + GT   + G   ++ V + +   V   G R+GA    ++  H D+ EF+  +
Sbjct: 137 IRPRGSVVKGTASSASGPCSYIDVFDASCKTVESAGARRGAQMGVMKISHPDILEFITAK 196

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +  G    R ++ N +  I D FM  V  N  W L    E S      G         Y 
Sbjct: 197 REVG----RWNNFNVSVGIVDGFMAAVEANEMWPLVHKAEPSVEQQRAG--------AYL 244

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R++D   + V+R++ A  +W  ++   ++   P I F D  N+ +   +V  + ++N C 
Sbjct: 245 RESDG--LWVYREVPAAEIWDTVMKSCYDFAEPGIVFLDLMNLDNNLSYVETIEATNPCA 302

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         C+LG I L             FD +   + ++   R LDNV+ +   
Sbjct: 303 EQPLPP----YGCCDLGPIILPKFVSRAFTERAAFDDEGFKAAVKIQTRFLDNVLSVTHW 358

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+ +K     R IG G  G    L +L I Y S E VE +      +   A  AS++L
Sbjct: 359 PLEQQRKEAEAKRRIGAGFTGLGDMLAMLGIRYNSIEGVEFSRHVALMMRDAAYEASIDL 418

Query: 702 AQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           A E+G +  F    +  +G F                    SRLP   LK R++  G+RN
Sbjct: 419 AIEKGPFPLFDADKYLKKGTF-------------------ASRLP-KSLKDRIRRHGIRN 458

Query: 761 SNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFT-------VVNSFLVNELK 811
           S+ ++IAPT T++       S  I+P +   Y +    GD               +  + 
Sbjct: 459 SHLLSIAPTGTVSLAFADNASNGIEPPFALAYTRKKRVGDGHVNYNVVDHAFRVFLETVC 518

Query: 812 QRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            ++L    + +  +Y       G   ++ D +     TA E+     +   +  Q  ID 
Sbjct: 519 AQELRAPLLEAVSRYQPAFEVAGKTYQVKDCIPPSIVTAQEMSAAEHLAVMAAVQPLIDT 578

Query: 870 AQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST-LKGVDGKLNAVP 927
           A S  + + E         +Y QAW   LK     R         S      + K   V 
Sbjct: 579 AISKTVNVPEDYPYDDFKNLYMQAWKANLKGLATYRPNKTLGAVLSVGTAATEAKSVEVK 638

Query: 928 VTDP 931
             DP
Sbjct: 639 DIDP 642


>gi|167647819|ref|YP_001685482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
 gi|167350249|gb|ABZ72984.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
          Length = 744

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 250/634 (39%), Gaps = 90/634 (14%)

Query: 291 FAFE--YLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNL 345
            AF+  + G +I   +Y F   +G         + RVA  +A  ET K ++    E  + 
Sbjct: 1   MAFDNPFAG-EIWSSKYRFAPPDGGGDASVAETWARVAHAIAEAETPKLRKGFQAEVMDA 59

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGND 403
           L+ F F+ +   L  +GT     L +CF+  V PDDL GIF  ++E A+  +  GG+G D
Sbjct: 60  LADFKFLPAGRILAGAGTARSVTLFNCFVMGVTPDDLGGIFEHVREAAVTLQQGGGVGMD 119

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ V +     +   G+R+GA+   L   H D+E F+
Sbjct: 120 FSSIRPAGARVEGVGADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFI 179

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++       R  + N +  + D FM  +  +  W L            +G        
Sbjct: 180 DAKRTA----NRFRNFNLSVLVTDPFMAALDADGDWPL-----------SFGG------- 217

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V R + A  LW +++   ++   P + F D  N  +   +   + +SN
Sbjct: 218 -----------QVQRTVRAADLWAQLMRATYDAAEPGVIFIDRVNAANNLAYCEQILASN 266

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         C LGS+NL         A+   D D+L +  RTAVR+LDNVIDI
Sbjct: 267 PCGEQMLPP----YGACLLGSLNLARLVDNPFEADAALDEDRLGALARTAVRMLDNVIDI 322

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +E         R +G+G+ G   AL      Y   +AV +    +  I   A  AS
Sbjct: 323 SRFPLEAQAVEARAKRRLGIGVTGLADALVFCGARYGDDQAVALTQRWLGVIKREAYRAS 382

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA E+  +  +   + D+                       + L  +E +  +   G+
Sbjct: 383 ARLAAEKAPFPLYDPQILDRPNL--------------------TSLD-EETRALIAAHGL 421

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN    +IAPT T + + G  S  I+P +   Y +     D                   
Sbjct: 422 RNGCLTSIAPTGTTSLLAGNVSSGIEPVFAYAYTRKVRQPD---------------GSSR 466

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E  + D         + +  P     +  +A ++ P   +   +  Q  +D + S  +  
Sbjct: 467 EEQVEDYALAVWKRLHGDAPPP--AAVFVSAQDLTPADHLRMQAAAQALVDSSISKTVNC 524

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            E  +      IYRQ + +G K     R  + T 
Sbjct: 525 PETIAFDDFADIYRQGYRLGCKGLTTYRPNAITG 558


>gi|85057305|ref|YP_456221.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789410|gb|ABC65142.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 845

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/703 (21%), Positives = 278/703 (39%), Gaps = 69/703 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  ++           L  +       E  ++  L +   ++  +     + Y++
Sbjct: 176 KEALQSFLQEGVAPKLKRFATLQDKLTFLQENEYYESTFLQK--YNYSQIKEIYQIAYQK 233

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +  F  ++G    Y  Y L        +E  +      A+  A  +    KR +     L
Sbjct: 234 NLTFPTFMGAFKFYHDYALKTRDKQHYLETYEDRLSINALYHAKGDFAIAKRLIVS---L 290

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T
Sbjct: 291 INQDFTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINIT 350

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G  +GV+   K+ + +    +Q G+R GA   YL  +H D+ +FL  
Sbjct: 351 NLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLNVFHADIIDFLST 410

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K + D+  R   ++    +P+  ++   +N     F P  V   +     +  +    +
Sbjct: 411 KKLSADEDVRVKTLSLGVVVPNKMIELARKNEVMYTFFPHTVFLEYGKNFADIAVDMSYW 470

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                       + I+   L   +  M  E+G+P++ F D  N  +       V  SNLC
Sbjct: 471 YDILIVNPKVQKKAINPRQLLELIAQMQGESGYPYLMFCDNTNQANTSDL--KVKFSNLC 528

Query: 586 TEITLNSSSEET--------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           TEI   + +                   CNL S ++     NN      +  T+  A+ V
Sbjct: 529 TEILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNT-----IQETVFMAMEV 583

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++ V +  N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     I
Sbjct: 584 MNCVSENTNISYVPAVAKANFLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAI 643

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLP 745
           +F+++  S   A+     +  FK S +  G +  +   +L +      M +     ++  
Sbjct: 644 NFYSLLHSCNKAKTTGKKFYRFKKSKYADGSYFNNRGEILPKTNKIKKMFQNITLPTQSD 703

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W++LK+ V   G+ NS+ +AIAP  +I  I G + S+ P  Q +  ++  +         
Sbjct: 704 WNQLKQDVMKFGLYNSHRLAIAPNGSIGYIMGATPSLTPVKQLVEERTYGNSKTYCPMPA 763

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                                     ++ TA++I+   LI+  +  QK
Sbjct: 764 LKQA--------------------------------SFMYTTAYKINKYDLIDVIAIAQK 791

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +DQ  S  L +    + ++L   Y  A    +KT YY R++ 
Sbjct: 792 HVDQGISFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQK 834


>gi|224536055|ref|ZP_03676594.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522328|gb|EEF91433.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 845

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/698 (22%), Positives = 283/698 (40%), Gaps = 107/698 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-- 576
                      +  E  V ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 577 --GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
                 S+N C EI L         C L +INL ++  N       FD++     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFDFELFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQS 665
           R++D++ID+    IE                        K  K +   R  G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIMEKIDADPESEDVKHTERILWDKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   +             L + +K  G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPQ-------------LYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDLKY--HDGS----IGNI 834
           +  +Y  +  ++ + T V+   V+E     ++  ++    ++ ++   H+ S       I
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHPKFVTWMEAQGHNPSKRYTQEEI 566

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           + + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +AW
Sbjct: 567 DVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVEAW 626

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
             G K     R  S + V  S     D K    P   P
Sbjct: 627 KSGCKGCTVYRDGSRSGVLISA--KSDKKEEMPPCKPP 662


>gi|261881174|ref|ZP_06007601.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
 gi|270332043|gb|EFA42829.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
          Length = 857

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/726 (20%), Positives = 280/726 (38%), Gaps = 106/726 (14%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
                 LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +
Sbjct: 11  EAFEASLKY---FDGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIAGEIARIEQKYK 67

Query: 337 K--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQ 388
               A + + LL  F ++    S  T   +  +   LS+CF+  +    D    I    +
Sbjct: 68  NPLSAEDVFGLLDHFRYIIPAGSPMTGIGNNQQVASLSNCFVIGLDGDADSYGAIMRVDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P +  
Sbjct: 187 MLSVGIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDAFMEAAVGDKFYMQQFPLDAK 242

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                   +  V ++ISA  LW K++   +++  P + F D   
Sbjct: 243 ------------------------KPMVEKEISARKLWEKIVHNAWQSAEPGVLFWDTII 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
             S       +    + T             C L S+NL ++  N       FD++K A 
Sbjct: 279 RESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSLNLYSYVKNPFTKEASFDFEKFAK 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            ++ A R++D+++D                           H  EK ++ +   R  G+G
Sbjct: 339 HVQLAQRIMDDIVDLEMEKINMILDKVGTDPQNEEVKCTERHLWEKIQRKSGMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  + + Y S EA E + +  + ++ +A  +SV +A ERGA+  +        
Sbjct: 399 ITAEGDMIAAMGLRYGSEEATEFSVKVHKTLALNAYRSSVTMAAERGAFEIYDAEREKNN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F    +  L E   +             L K +   G RN  C+ IAPT T + +   +
Sbjct: 459 PF----VNRLKEADPQ-------------LYKDMVKHGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYH------D 828
             I+P +  +Y  +  ++   T V+   V+E+    ++  ++ +  ++ ++ +       
Sbjct: 502 SGIEPVFMPVYKRRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFLTWMEVNGIDTNKK 561

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
            S   I+ +        ATA ++D +  +      QKW+D + S+ + L     + L + 
Sbjct: 562 YSQEEIDELVARSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPGNVDEALVNK 621

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST------LKGVDGKLNAVPVTDPNSSTHSLGIP 941
           +Y +AW  G K     R  S + V  S        +        +     N        P
Sbjct: 622 LYVEAWRSGCKGCTIYRDGSRSGVMVSVSKKDKKKEERHEAPEPITAPTLNHPMVQETRP 681

Query: 942 SSCTSD 947
                D
Sbjct: 682 KVLDCD 687


>gi|254881426|ref|ZP_05254136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642814|ref|ZP_07997452.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
 gi|254834219|gb|EET14528.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385558|gb|EFV66499.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
          Length = 848

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/722 (21%), Positives = 283/722 (39%), Gaps = 115/722 (15%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
              D               F  + L  ++  ++Y +  + G+  E  P+    R+A  +A
Sbjct: 6   YTYDEAFEASLQY------FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVA 59

Query: 330 LKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLY 381
             E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D   
Sbjct: 60  RIEAKYQNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYG 119

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q 
Sbjct: 120 GIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQD 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       +  
Sbjct: 180 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQ 234

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  +    + I A ALW+K++   +++  P +
Sbjct: 235 QYP------------------------VDSDQPVFTKDIDASALWKKIVHNAWKSAEPGV 270

Query: 562 TFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            F D     S             S+N C EI L         C L +INL ++  N    
Sbjct: 271 LFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTK 326

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKK 648
              FD+D     +  A R++D++ID+                          H  EK  K
Sbjct: 327 EAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYK 386

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + EA E +++  + I+  A  +SV +A+ERGA+
Sbjct: 387 KSGQGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAF 446

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +         F    I  L E                EL + +K  G RN  C+ IAP
Sbjct: 447 AIYDSEREKNNPF----INRLKEADP-------------ELYEEMKKYGRRNIACLTIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E ++   K+ 
Sbjct: 490 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIVFHHKFV 547

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +    N            I+++ +      AT+ ++D +  ++   R QKW+D + S+ +
Sbjct: 548 EWMTVNGYDPTKRYTQEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTI 607

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P + 
Sbjct: 608 NLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKPPTV 667

Query: 935 TH 936
             
Sbjct: 668 VE 669


>gi|56694762|ref|YP_164482.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 2]
 gi|52843314|gb|AAU88105.1| large subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 975

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/646 (24%), Positives = 271/646 (41%), Gaps = 55/646 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK-----------ETEKEKRAVEFYNL 345
                 + Y   I+G  +E     + R+A  LA +           +    +    F+N 
Sbjct: 336 SALKYEEFYLKKIDGWLLESVPQMYARIAGYLACRSDLAGRVVFGRDASWLEMFTYFFNR 395

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
             +   + STP +   GTR P  SSC+L                ++ LA  +  +     
Sbjct: 396 FYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQ--------TRTAHSTLAAITQDVAPILA 447

Query: 406 PVRGLGAHIHGTNGKSQG--VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              G+G  +   N +     ++P LK  +    A N    R   V  YLE WH D+   L
Sbjct: 448 RSGGIGLCLQSFNDRPGNASIMPALKALDSIVAAYNDQSLRPTGVTVYLEPWHSDIMAVL 507

Query: 464 DLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGK 516
            ++    G++ RR  ++ +A W+PDLF KR+       ++  WTLFS      L   +G+
Sbjct: 508 RMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKDVVWTLFSNRGGMHLSSFHGE 567

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y   E Q           +    +   ++     TG P++ FKD  N        
Sbjct: 568 EFEKLYLCQEEQGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAVNRHYIYDTQ 621

Query: 577 G-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R  V +++ +
Sbjct: 622 GSAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFSRLRESVRACVLMVNIM 681

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID       + ++ +   R++G+G+ G  +A   L +  AS E  E+     E +   A+
Sbjct: 682 IDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKLGLDLASEEFRELNRHIAEVMLLAAM 741

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            AS  L       +  FK S++  G F  +                     W+ L++ + 
Sbjct: 742 QASNALCLHGARPFREFKRSVFRAGRFHWEGFP---------GARPRYEGEWERLRQSMM 792

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR- 813
             G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ L+ EL++  
Sbjct: 793 KHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLRELRETF 852

Query: 814 -DLWDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQA 870
                  ++  L     S+      +  D   +   TAF+ D   LI+  + R  ++D +
Sbjct: 853 SGRRLNEVLDGLDAKQWSVERALPCLAADHPLRRFKTAFDYDQELLIDLCADRAPYVDHS 912

Query: 871 QSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
           QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 913 QSMTLYVTERADGTLPASALVRLLAHAYKRGLKTGMYYCKVRKATN 958


>gi|30984467|ref|NP_851899.1| ribonucleotide reductase subunit 1 [Macacine herpesvirus 1]
 gi|30844281|gb|AAP41457.1| large subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 997

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/647 (25%), Positives = 272/647 (42%), Gaps = 56/647 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEFYNL 345
                 + Y   I+   +E     + R+A  LA            +++   +    F+  
Sbjct: 357 SALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWLEMFTYFFTR 416

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
                 + STP +   GTR P +SSC+L                ++ LA  +  +G    
Sbjct: 417 FYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQ--------TTTTHSTLAAITQNVGPILA 468

Query: 406 PVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
              G+G  +   N   +G   ++P LK  +    A N    R   V  YLE WH D+   
Sbjct: 469 RSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSDIMAV 528

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYG 515
           L ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLF+      L   +G
Sbjct: 529 LRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLSRFHG 588

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  Y   E           + +    L   ++     TG P++ FKD  N       
Sbjct: 589 EEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAVNRHYIYDT 642

Query: 576 VG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R  V +++ 
Sbjct: 643 QGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVLMVNI 702

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +   A
Sbjct: 703 MIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVMLLAA 762

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +  S  L       +  FK S++  G F         + R            W+ L++ +
Sbjct: 763 MQTSNALCFHGARPFHEFKHSMFSAGRFH---WEGFPDARPRYEG------EWERLRQSM 813

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ L+ EL++ 
Sbjct: 814 MKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQELRET 873

Query: 814 --DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQ 869
                   +I  L     S+   +  +  D   +   TAFE D   LI+  + R  ++D 
Sbjct: 874 FSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADRAPYVDH 933

Query: 870 AQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
           +QSL LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 934 SQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|28804675|dbj|BAC58079.1| iibonucleotide reductase large subunit [Cercopithecine herpesvirus
           1]
          Length = 997

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/647 (25%), Positives = 272/647 (42%), Gaps = 56/647 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEFYNL 345
                 + Y   I+   +E     + R+A  LA            +++   +    F+  
Sbjct: 357 SALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWLEMFTYFFTR 416

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
                 + STP +   GTR P +SSC+L                ++ LA  +  +G    
Sbjct: 417 FYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQ--------TTTTHSTLAAITQNVGPILA 468

Query: 406 PVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
              G+G  +   N   +G   ++P LK  +    A N    R   V  YLE WH D+   
Sbjct: 469 RSGGIGLCLQEFNDARRGNASIMPTLKALDSLVAAYNNQSLRPTGVTVYLEPWHSDIMAV 528

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYG 515
           L ++    G++ RR  ++ +A W+PDLF KR+       +N  WTLF+      L   +G
Sbjct: 529 LRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAGLSLSRFHG 588

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  Y   E           + +    L   ++     TG P++ FKD  N       
Sbjct: 589 EEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAVNRHYIYDT 642

Query: 576 VG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R  V +++ 
Sbjct: 643 QGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVRACVLMVNI 702

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+     E +   A
Sbjct: 703 MIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHIAEVMLLAA 762

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +  S  L       +  FK S++  G F         + R            W+ L++ +
Sbjct: 763 MQTSNALCFHGARPFHEFKHSMFSAGRFH---WEGFPDARPRYEG------EWERLRQSM 813

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ L+ EL++ 
Sbjct: 814 MKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTLLLQELRET 873

Query: 814 --DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQ 869
                   +I  L     S+   +  +  D   +   TAFE D   LI+  + R  ++D 
Sbjct: 874 FSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCADRAPYVDH 933

Query: 870 AQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
           +QSL LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 934 SQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|121611904|ref|YP_999711.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
 gi|121556544|gb|ABM60693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
          Length = 813

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/647 (23%), Positives = 261/647 (40%), Gaps = 81/647 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D   + +   +L ++Y            Q  + RVA  LA  E  + +   E   L +  
Sbjct: 10  DLGLQPISQDVLCEKYLKPGET----TAQMLYQRVARALASVEAPELRSRYEALFLANLQ 65

Query: 350 HF-MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGG 399
              + +   +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG
Sbjct: 66  AGAIGAGRIMSAAGTDIQATLINCFVQPVGDCIQGQDEDGFPGIYEALREAAETMRRGGG 125

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D++ +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV
Sbjct: 126 VGYDFSRIRPKGARVMATASMASGPCSYMNVFDQSCATVESAGARRGAQMGVLRIDHPDV 185

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+  ++  G    R ++ N +  +PD F++ +  +A W L        +H        
Sbjct: 186 HEFISAKRQPG----RWNNFNVSVSVPDAFIQALQDDAAWDL--------VHKARPGAAL 233

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           +A   ++R        V+  + A ALW +++   ++   P I F    N  +   +   +
Sbjct: 234 LAQGAHQRADG---QWVYASVPARALWERIMRSAYDYAEPGILFLGRINEDNNLHYCETI 290

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------QFDYDKLASTIRTAVRVL 632
            ++N C E  L +       C+LG + L     +         FD++  A  +   VR L
Sbjct: 291 TATNPCGEQPLPA----YGCCDLGPVILPRFVRHPFGFGGAAAFDFEAFAQAVALQVRAL 346

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNV+D+    + + ++     R IG+G  G  + L +L + Y  PE   +A      +  
Sbjct: 347 DNVLDLTYWPLPQQREEAMAKRRIGVGFTGLGNTLAMLCLRYDRPEGRAMAVRIARCMRD 406

Query: 693 HAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            A  ASV+LA+E+GA+  F    +  +G F                    SRLP + LK 
Sbjct: 407 AAYRASVDLAREKGAFPHFSAGPYLAEGRF-------------------ASRLP-EALKA 446

Query: 752 RVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            ++  G+RNS+ ++IAPT T++       S  I+PS+   Y +   + D      + V +
Sbjct: 447 AIRQHGIRNSHLLSIAPTGTVSLAFADNASNGIEPSFAWTYKRKKRAADGGSTE-YAVQD 505

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
              R L+ E             G+ + +PD       +A ++     I      Q W+D 
Sbjct: 506 HAWR-LYREL-----------GGDAQALPD----YFVSALDMPVQAHIAMMEAVQPWVDT 549

Query: 870 AQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           A S  + +      +    +Y QAW   LK     R  +       T
Sbjct: 550 AISKTVNIPVDYPYEDFKDLYLQAWRARLKGLATYRPNAILGAVLET 596


>gi|323143006|ref|ZP_08077712.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417200|gb|EFY07828.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
          Length = 591

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/681 (26%), Positives = 283/681 (41%), Gaps = 108/681 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   +D  F+ LG+  L + Y         + PQ  F  V+          ++ A   Y+
Sbjct: 5   IDLTKDNLFDDLGITRLKESYMRPEE----KSPQERFAFVSETF----GSDKEHAQRIYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             S      STP L    T      SCFL+ + D   G+   L E   L+   GG+    
Sbjct: 57  YASRHWLSFSTPILSFGRTSQGLPVSCFLSYMEDSADGLIETLSEVNRLSMLGGGI---- 112

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               G+   I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+  F++
Sbjct: 113 ----GIHLGIRSADEKSVGVMPHLKIYDAACLAYRQGTTRRGSYAAFLDISHPDIIPFIE 168

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYGKE 517
           +RK TGD   RT +++    I D FM+++T+       +  W L  P             
Sbjct: 169 MRKPTGDQNMRTLNLHHGINISDAFMQKITKCMQDDNADDSWQLIDPHSKK--------- 219

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                             +   +SA  LW+++L +  +TG P++ F D      P     
Sbjct: 220 ------------------IIETVSARDLWQRILELRMQTGEPYLIFTDTAEKALPHWLKT 261

Query: 578 V---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               ++ SNLCTEI L ++ + TAVC L S+NL  +F   + D   +   +     VL  
Sbjct: 262 KNLHINGSNLCTEIFLPTNEQRTAVCCLSSLNL-EYFDEWRHDSQFIDDVMEFLDNVLQY 320

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I+   ++I++AK S    R++GLG +GF S L    IP+ S  A  I  +    I    
Sbjct: 321 FIEHAPNSIKRAKLSAFKERSVGLGALGFHSYLQKKGIPFESVIAKSINKQIFSHIRQCC 380

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             A   L   RG                                                
Sbjct: 381 ELADKRLCALRGPCPD----------------------------------------ASDA 400

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            +  R S+ MAIAP A+ + I G +  SI+P   N+Y +  +SG +   N  L   LK+ 
Sbjct: 401 GVMRRFSHWMAIAPNASSSLIVGNTSPSIEPRRANVYRQDTLSGAYITKNRHLQQALKEL 460

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           +L  E + +D+  HDGS+ +++ +P  ++ +  TA EID  ++I+ A+ RQ++IDQ QS+
Sbjct: 461 NLDTEEIWTDIIAHDGSVQHLDILPQQIRDVFKTAQEIDQRFIIDLAADRQQFIDQGQSV 520

Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+     S K L   +  AW  GLK+ YY RS      ++  +     K+         
Sbjct: 521 NLFFPADVSIKYLHACHYLAWKKGLKSLYYCRSDKLRKADRIGISIKRQKIEDDINM--- 577

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
                     S  +D  C  C
Sbjct: 578 ---------QSLLNDNTCLAC 589


>gi|160889318|ref|ZP_02070321.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|317479653|ref|ZP_07938778.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
 gi|156861325|gb|EDO54756.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|316904218|gb|EFV26047.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
          Length = 845

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/719 (22%), Positives = 287/719 (39%), Gaps = 113/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    +D  Y    LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKNYSYDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + ++                            + I A ALW+K++   +++  
Sbjct: 232 YTQQYPIDATE------------------------PAFQKDIDASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD++     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E +++  + ++ +A  +S+E+A+ER
Sbjct: 384 IYKKSAQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEQVHKTVALNAYRSSIEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E   E+              + +K  G RN  C+ 
Sbjct: 444 GAFEVYDTEREKNNPF----INRLREADPEMY-------------EEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   ++E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   +      +   ++ + +      AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEAQGYN-PAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 606 TINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKSELPPCKPP 662


>gi|270295907|ref|ZP_06202107.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273311|gb|EFA19173.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 845

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/719 (22%), Positives = 287/719 (39%), Gaps = 113/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    +D  Y    LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKNYSYDEAY-GESLKY---FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNPLSSEELFGLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + ++                            + I A ALW+K++   +++  
Sbjct: 232 YTQQYPIDATE------------------------PAFQKDIDASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD++     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFELFKKHVALAQRIMDDIIDLELEKIERIMSKIDADPESEDVKHTERVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E +++  + ++ +A  +S+E+A+ER
Sbjct: 384 IYKKSAQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E   E+              + +K  G RN  C+ 
Sbjct: 444 GAFEVYDTEREKNNPF----INRLREADPEMY-------------EEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   ++E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   +      +   ++ + +      AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEAQGYN-PAKRYTQEEVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 606 TINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKSELPPCKPP 662


>gi|150002611|ref|YP_001297355.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
 gi|149931035|gb|ABR37733.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
          Length = 848

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/722 (21%), Positives = 283/722 (39%), Gaps = 115/722 (15%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
              D               F  + L  ++  ++Y +  + G+  E  P+    R+A  +A
Sbjct: 6   YTYDEAFEASLQY------FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVA 59

Query: 330 LKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLY 381
             E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D   
Sbjct: 60  RIEAKYKNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYG 119

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q 
Sbjct: 120 GIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQD 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       +  
Sbjct: 180 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQ 234

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  +    + I A ALW+K++   +++  P +
Sbjct: 235 QYP------------------------VDSDQPVFTKDIDASALWKKIVHNAWKSAEPGV 270

Query: 562 TFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            F D     S             S+N C EI L         C L +INL ++  N    
Sbjct: 271 LFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTK 326

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKK 648
              FD+D     +  A R++D++ID+                          H  EK  K
Sbjct: 327 EAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYK 386

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + EA E +++  + I+  A  +SV +A+ERGA+
Sbjct: 387 KSGQGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAF 446

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +         F    I  L E                EL + +K  G RN  C+ IAP
Sbjct: 447 AIYDSEREKNNPF----INRLKEADP-------------ELYEEMKKYGRRNIACLTIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E ++   K+ 
Sbjct: 490 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIVFHHKFV 547

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +    N            I+++ +      AT+ ++D +  ++   R QKW+D + S+ +
Sbjct: 548 EWMTVNGYDPTKRYTQEEIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTI 607

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P + 
Sbjct: 608 NLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKPPTV 667

Query: 935 TH 936
             
Sbjct: 668 VE 669


>gi|323344465|ref|ZP_08084690.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
 gi|323094592|gb|EFZ37168.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
          Length = 862

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/726 (21%), Positives = 285/726 (39%), Gaps = 102/726 (14%)

Query: 270 HESMMDFDLVY-LANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
            E+   +         L+Y   F  + L  ++  ++Y +  + G+  E  P+  + R+A 
Sbjct: 1   MENQKTYSFEEAFGASLEY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMYWRIAN 57

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +A  E +     +A E + LL  F ++    +         Q   LS+CF+  +    D
Sbjct: 58  EIARIEKKYANPLKAKEIFELLDHFRYIVPAGSPMTGIGNDHQVASLSNCFVIGLDGDAD 117

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V
Sbjct: 118 SYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREV 177

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM     +  
Sbjct: 178 AQDG-RRGALMLSVSIKHPDSELFIDAKMTEG----KVTGANVSVKIDDEFMNAAISDKP 232

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P +  +                         +    ISA  LW K++   +++  
Sbjct: 233 YTQQFPIDSKN------------------------PQCTNSISAKKLWEKIVHNAWKSAE 268

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVC-NLGSINLLAHFAN 613
           P + F D     S       +     S+N C EI L        +C NL S  +     +
Sbjct: 269 PGVLFWDTIIRESIPDCYADLGFHTVSTNPCGEIPLCPYDSCRLLCINLYSYVVNPFTKD 328

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD+D     ++ A R++D+++D                           H  EK K  
Sbjct: 329 AYFDFDTFKKHVQIAQRIMDDIVDLELEKIDKIMEKITIDPQSDEVKGAEYHLWEKIKYK 388

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R  G+G+      L  + + Y + EA + +      ++  A  +SV +A+ERGA+ 
Sbjct: 389 SGLGRRTGVGITAEGDMLAAMGLRYGTQEATDFSVSVHRALALGAYRSSVTMAKERGAFE 448

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +     ++  F    I  L E                EL + +   G RN  C+ IAPT
Sbjct: 449 VYDAKREERNPF----ILRLKEADP-------------ELYRDMVQYGRRNIACLTIAPT 491

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDL 824
            T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++ +  +  +
Sbjct: 492 GTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHKKFLEWM 551

Query: 825 KYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           + +        +   I+ +        ATA ++D +  +      QKW+D + S+ + L 
Sbjct: 552 RINGIDSTKKYTQEEIDELVAKSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLP 611

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
               + L + +Y +AW  G K     R  S   V  S  K  D K N       +++   
Sbjct: 612 NEVDEALVNRLYVEAWRSGCKGCTIYRDGSRAGVMISVSKK-DKKKNEDGEAVKDNNMEQ 670

Query: 938 LGIPSS 943
           LG+P  
Sbjct: 671 LGMPPC 676


>gi|162448129|ref|YP_001621261.1| ribonucleoside-diphosphate reductase subunit alpha [Acholeplasma
           laidlawii PG-8A]
 gi|161986236|gb|ABX81885.1| ribonucleoside-diphosphate reductase, alpha chain [Acholeplasma
           laidlawii PG-8A]
          Length = 700

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/672 (22%), Positives = 277/672 (41%), Gaps = 53/672 (7%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     +E     +          +  +  D+ Y   F F  Y+G    Y+ Y L    
Sbjct: 54  EEKLEFLVENDYYEKEFLAKYTMEQIQTI-YDIAYAAKFRFPTYMGAFKFYNDYALKDRT 112

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSS 370
            +  + + +  R+A+           +A     LL S  F  +TPTL N+G  +  +  S
Sbjct: 113 GKNYL-ERYEDRLAVNALYHANGDFDKARNLIRLLISQDFTPATPTLLNTGKSKRGEFVS 171

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL    D L  I    + +  L+K  GG+  + T +R  G  I G    S+GV+  +K+
Sbjct: 172 CFLLEAGDSLNDISRISEFSMQLSKVGGGVSINLTNLRAKGEAIKGIPNVSKGVVGVVKL 231

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            ++     +Q G+R GA   YL  +H D+E+FL  +K   DD  R   ++    IPD FM
Sbjct: 232 LDNNFRYADQMGQRTGAGAVYLNVFHADIEDFLATKKLNADDDIRAKTLSMGVVIPDKFM 291

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LF P  V + +     +  I  +++        +   RK++   +   + 
Sbjct: 292 ELARDNKDMWLFYPHTVFEQYGKDFADISIDMDHWYDILADNPLVRKRKVNPRKILDMIA 351

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--------VCNL 602
            +  E+G+P+I F D  N  +P      V  SNLCTEI   + +            +   
Sbjct: 352 QLQGESGYPYIMFSDNVNKANPLDM--PVKFSNLCTEILQPTITSHYGDYGANNDEIGMD 409

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661
            S NL +    N   ++ +  T+  A+ V+++V +      +    K+N  +R++G G+M
Sbjct: 410 ISCNLASGHMGNMMKHNTIKETVFGAMDVMNSVSNQTDIKHVPAVAKANRLNRSVGFGIM 469

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
           G    +   +I Y S E +++ D     ++++++  S+E A+E    +  F+ S +  G 
Sbjct: 470 GHHGYIAENYIMYGSDENIDLIDVFFNIVNYYSLVHSMEKAKETGEKFHRFEKSKYADGS 529

Query: 721 FPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           +      +L +      + +     +   W +LK+ V T G+ NS+ +A+AP  +I  + 
Sbjct: 530 YFDGRGQILPKTDKVKELFKNVYIPTDDDWLQLKEDVMTHGLYNSHRLAVAPNGSIGYVM 589

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P  Q +  ++  +         +                              
Sbjct: 590 SATPSLTPIKQLVEERTYGNSKTYYPMPAVEKAA-------------------------- 623

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLM 895
                  ++ TA+ +D   LI+  +  QK +DQ  S  L +    + ++L   Y  A   
Sbjct: 624 ------FMYETAYRMDTYRLIDVIATAQKHVDQGISFELCITSDITTRELQKYYLYAHYQ 677

Query: 896 GLKTTYYLRSRS 907
           G+KT YY R++ 
Sbjct: 678 GIKTLYYTRTQK 689


>gi|295134783|ref|YP_003585459.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
 gi|294982798|gb|ADF53263.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
          Length = 564

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/641 (27%), Positives = 276/641 (43%), Gaps = 112/641 (17%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A++ K +R +       QIL   Y L       E  ++   R+A   A +  + E  A 
Sbjct: 11  IADEPKNKRLWWLNDESQQILNRGYLLKG-----ETVKSAIERIANASAKRLYKPE-LAE 64

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            F  ++       S+P   N GT      SCF   VPD++ GI   L E  M  K  GG 
Sbjct: 65  AFIEMIERGWMSLSSPIWANMGTERGLPISCFNVYVPDNIEGITHKLGEVIMQTKIGGGT 124

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +RG G+ +   NGKS G   F+K+ +     ++QGG R+GA  AYL+  H D++
Sbjct: 125 SGYFGELRGRGSAVTD-NGKSSGATSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIK 183

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+++           ++     +PD +M+ + +                         
Sbjct: 184 EFLEIKNIGNP----IQNLFYGVCVPDYWMQEMIEGD----------------------- 216

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
                              +    +W K+L    + G P+I FKD  N   PQ +     
Sbjct: 217 -------------------MEKREIWAKVLESRQQKGLPYILFKDNINRFKPQVYKDKNR 257

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +HSSNLC+EI L S+ +E+ +C L S+NL        +D  K    ++ A+  LD V+ 
Sbjct: 258 TIHSSNLCSEIALPSTEDESFICCLSSMNL------ELYDEWKDTEAVKLAIYFLDGVLQ 311

Query: 638 INC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                    H +  A +    HRA+GLG MG+ S L    IP+    A  +  +  E IS
Sbjct: 312 EFIAKTEGNHYLASANRFAKNHRALGLGAMGWHSYLQKNRIPFEGMRAKGLTHQIFEDIS 371

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS ELA           +++ +                                 
Sbjct: 372 AKATKASKELA-----------TIYGEPEM------------------------------ 390

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +K  G+RN+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L
Sbjct: 391 -LKGYGLRNTTLMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLAKGNFMRKNKYLKQLL 449

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++ L +E     +  H GS+ ++E +  + K I  T  EI  + +I+ AS RQK+IDQA
Sbjct: 450 EEKGLDNEDTWRSIMLHHGSVQHLETLTQEEKDIFKTFKEISQLEIIQQASVRQKFIDQA 509

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLNL +      + ++ +  +AW +G+KT YY RS+S + 
Sbjct: 510 QSLNLNIPAGVPVRDVNQLMIEAWKLGVKTLYYQRSQSVSK 550


>gi|222099545|ref|YP_002534113.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
 gi|221571935|gb|ACM22747.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
          Length = 836

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/695 (25%), Positives = 306/695 (44%), Gaps = 94/695 (13%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMR------VAMGL- 328
           ++ L+  ++   D         IL DRYF+   +G  +E   +    R       A  L 
Sbjct: 9   IMKLSTLIEKWIDVEPSRNAQTILKDRYFMRDLDGKYLETRWEDVARRVARVVATAELLN 68

Query: 329 -ALKETEKEKRAVEF----YNLLSSFHFMCSTPTLFNSG--------------------- 362
            + K+ EK  R  E+    + +L +  F+ ++PTLFN+G                     
Sbjct: 69  PSYKKGEKLDRIKEWEDTFFKILKARLFLPNSPTLFNAGLGVRYELLWKPIDQMTLEDYE 128

Query: 363 ------TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
                      LS+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + G
Sbjct: 129 EIYRTRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAG 188

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T+GK+ G + F+ V N     V QG +R+GA+   L   H D+EEF+D ++    +    
Sbjct: 189 THGKASGPVSFMHVFNSAISVVKQGYRRRGALMGILNIDHPDIEEFIDAKRENTGEAV-L 247

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           +  N +  IP                   E+  L++          E+ E +       +
Sbjct: 248 NFFNLSVGIP---------------MDKKEILKLYE----------EDGELELSHPRSTI 282

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +++    L+RK+ +  +++G P + F    N   P      ++S+N C EI       +
Sbjct: 283 RKRVKIRELFRKIASNAWKSGDPGLAFLGEMNRYYPLYPHRKINSTNPCGEI----GLSD 338

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSI++   + N   D + L   ++ AVR LD+VID+N   I+K  K+    R +
Sbjct: 339 YEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDDVIDVNVFPIDKITKAVKESRRL 398

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L+ L +PY S EA + A   M FI+ HA  AS EL +E+G +   + S +
Sbjct: 399 GLGIMGFADLLYKLELPYDSQEARDFASNLMAFIALHAHRASYELGKEKGNFPLLEISRY 458

Query: 717 DQGV----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                   F + +     E+R+ + M R  R               RN   + IAPT +I
Sbjct: 459 RTEEGFVPFAMGTSNYDDEIREVMKMTREYR---------------RNVALLTIAPTGSI 503

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGS 830
           +NI   S  ++P++   Y +     D T      VN++ +  L  E +  I       GS
Sbjct: 504 SNIADTSSGLEPNFLLAYTRYMTKEDGTKEPLLYVNQVLREKLDPEILRRIEKDLIEKGS 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
           + +I  +P+ +K++   A +IDP+  +      Q+++D   S  + + +  +   +  +Y
Sbjct: 564 LKDIPDVPEKIKRVFVVALDIDPIDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVY 623

Query: 890 RQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKL 923
            +A    ++     R  S  T V    LK  +   
Sbjct: 624 LEALRTNVRGITIYRDGSLQTQVLTKALKTPEAPK 658


>gi|297539886|ref|YP_003675655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
 gi|297259233|gb|ADI31078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
          Length = 721

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/677 (20%), Positives = 264/677 (38%), Gaps = 72/677 (10%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF-------FMRVAMGLALKETE 334
            +    E++   + + L I   +Y L          +         + RVA  LA  ET 
Sbjct: 10  ESKPDSEKEIPIQAVSLDIWDKKYRLKTKAG-----EHVDADIDASYARVARALADVETT 64

Query: 335 KEKRAVEFYNLLSSFH--FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGAL 387
            EKRA      L +     + +     N+G    +      +      + D +  I G +
Sbjct: 65  DEKRAEWHEKFLWALRRGAIPAGRITSNAGALEHKPATSTINCTVSGVISDSMDDILGKV 124

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            E  +  K   G+G +++ +R  GA + G    + G + F+ + +     V+  G R+GA
Sbjct: 125 HEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGA 184

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE- 506
             A  +  H DV +F+  ++  G    R    N +  I   FM+ V  +A W L  P   
Sbjct: 185 QMATFDISHPDVTDFIKAKRENG----RLRQFNLSCLITKEFMEAVKADAEWKLAFPVTE 240

Query: 507 ---------VSDLHDLYGKEFEIAYENYER----QADRGEIKVFRKISAVALWRKMLTML 553
                     +DL  +  +E+ I  +   +     A +   +V++ I A  LW  +++  
Sbjct: 241 KEAIIDGLNTNDLAQVVWREWPIKGKYLTKLDGVDAGKVACRVYKTIKARRLWDVIMSST 300

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA- 612
           ++   P     D  N  +       + ++N C E  L         C LGS+NL      
Sbjct: 301 YDFAEPGFILIDRVNEMNNNWFCENIRTTNPCGEQPLPP----YGACLLGSVNLTRFVKK 356

Query: 613 ----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  FD+ +    +    R+LDNV++IN   +++ +      R  G+G +G  S+L 
Sbjct: 357 PFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQEQRDEIMRKRRHGMGYLGLGSSLT 416

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG-------SLWDQGVF 721
           ++ + Y   E+++  DE    ++    +  V+LA+E+G               L  +   
Sbjct: 417 MMKLKYGEEESLKFTDEVTRVMAEEGWNTGVQLAEEKGPAPIMDEKFEVTADMLAKRPEM 476

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPW---DELKKRVKTIGMRNSNCMAIAPTATIANIC-- 776
             D I +  ++  ++ + + SR      + L+ ++   G+R ++  +IAPT TI+     
Sbjct: 477 AADGIKVGQKIAGKVLLGKYSRYMQQFPEGLRNQIAAKGVRFTHHSSIAPTGTISLSLAN 536

Query: 777 GVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
             S  I+PS+ + Y ++ +         V+ F    L  R+L +   +        S   
Sbjct: 537 NASNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRELINPNAMPF------SDKP 590

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQA 892
            E++PD        +  I     ++  +  QKWID + S  + +      +    IY  A
Sbjct: 591 EEQLPD----YFLDSSTIMAKAHVDIQAASQKWIDSSISKTINVPTDYDFEDFKNIYLYA 646

Query: 893 WLMGLKTTYYLRSRSAT 909
           +  GLK     R     
Sbjct: 647 YDKGLKGCTTFRFNPEA 663


>gi|317475578|ref|ZP_07934840.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908282|gb|EFV29974.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 845

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/735 (22%), Positives = 290/735 (39%), Gaps = 116/735 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + L + F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNALSSEELFGLFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P + +D                            ++I+A  LW+K++   +++  
Sbjct: 232 YVQQYPIDATD------------------------PVFKKEINATDLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E A++  + ++  A  +SV +A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E                EL + +K  G RN  C+ 
Sbjct: 444 GAFEVYDSEREKNNPF----INRLREADP-------------ELYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ + + V+   V+E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   D      +   I+ + +      AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEAEGYD-PAKRYTQEEIDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            + L     ++L + +Y +AW  G K     R  S + V  ST      K N +P   P 
Sbjct: 606 TINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTK---SDKKNELPPCKP- 661

Query: 933 SSTHSLGIPSSCTSD 947
             T     P    +D
Sbjct: 662 -PTVVETRPKVLEAD 675


>gi|330945451|gb|EGH47018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 216/315 (68%), Positives = 255/315 (80%), Gaps = 1/315 (0%)

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           +GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNT
Sbjct: 2   KGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNT 61

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKI 540
           ANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I
Sbjct: 62  ANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTI 121

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 122 QAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 181

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+
Sbjct: 182 NLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGI 241

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+
Sbjct: 242 MGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGI 301

Query: 721 FPIDSIGLLAEVRDE 735
            P+DS  +L E R E
Sbjct: 302 LPLDSQQILIEQRGE 316


>gi|329960252|ref|ZP_08298694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
 gi|328532925|gb|EGF59702.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
          Length = 845

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/719 (22%), Positives = 284/719 (39%), Gaps = 113/719 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    ++  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKTYSYEEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E +NLL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNGLSSEELFNLLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLADSFMQAAIEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P +                               ++I A ALW+K++   +++  
Sbjct: 232 YTQQYPIDAE------------------------VPVFKKEIDASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD++     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFELFEKHVSLAQRIMDDIIDLELEKIERIMEKIDSDPECEDVKHTERILWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E ++   + ++ +A  +SVE+A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSERVHKAVALNAYRSSVEMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E                EL + +K  G RN  C+ 
Sbjct: 444 GAFEIYDTEREKNNPF----INRLREADP-------------ELYEEMKKFGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ + T V+   ++E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   +      +   ++ +        AT+ ++D +  ++   R QKW+D + S+
Sbjct: 547 VTWMEAQGYN-PAKRYTQEEVDAMVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISV 605

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + L     + L + +Y +AW  G K     R  S + V  ST    D K    P   P
Sbjct: 606 TINLPNDVDEDLVNRLYIEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKEGLPPCKPP 662


>gi|189463959|ref|ZP_03012744.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
 gi|189438532|gb|EDV07517.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
          Length = 845

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/698 (22%), Positives = 283/698 (40%), Gaps = 107/698 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    S  T   +  +   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFRYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-- 576
                      +  E  V ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 577 --GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
                 S+N C EI L         C L +INL ++  N       F+++     +  A 
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPFKPDAYFNFELFQKHVALAQ 343

Query: 630 RVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQS 665
           R++D++ID+    IE                        K  K +   R  G+G+     
Sbjct: 344 RIMDDIIDLELEKIERIIEKIDADPESEDVRHTERVLWDKIYKKSGQGRRTGVGITAEGD 403

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    
Sbjct: 404 MLAALGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYDTEREKNNPF---- 459

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
           I  L E   +             L + +K  G RN  C+ IAPT T + +   +  I+P 
Sbjct: 460 INRLREADPQ-------------LYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPV 506

Query: 786 YQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDLKY--HDGS----IGNI 834
           +  +Y  +  ++ + T V+   V+E     ++  ++    ++ ++   H+ S       I
Sbjct: 507 FLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHPKFVTWMEAQGHNPSKRYTQEEI 566

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
           + + +      AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +AW
Sbjct: 567 DVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVEAW 626

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
             G K     R  S + V  S     D K    P   P
Sbjct: 627 KSGCKGCTVYRDGSRSGVLISA--KSDKKEEMPPCKPP 662


>gi|51512034|gb|AAU05233.1| ribonucleoside-diphosphate reductase 1 alpha chain [Enterobacteria
           phage T5]
          Length = 811

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/801 (19%), Positives = 296/801 (36%), Gaps = 100/801 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C    DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCK-TVDVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M           +  G 
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHM-----------VSVGA 149

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
              +    + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 150 WEDM-SAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A  Q  
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQ-Q 326

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR------------KISAVALWRKML 550
           S     ++H+ +  + E  +E     A++    + +            K+SA  +    L
Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPTAPKVSAKEILDTWL 446

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  E ++CNLG + L    +       +   T    ++ +D +I+I  +     + 
Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTMEY 559

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA 
Sbjct: 560 TAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGAC 619

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P
Sbjct: 620 EWFNRTKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMP 675

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + GV+ SI+P  + + +K +       +     +       W+  M        
Sbjct: 676 GESSSVLLGVTNSIEPPRKIVSIKGSAVNKVIAIAPGATD-------WETLMS------- 721

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK---- 884
                           +  A+++D +  I+  +  QK+  Q+ S N+Y D    +     
Sbjct: 722 ----------------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIP 765

Query: 885 ---LDFIYRQAWLMGLKTTYY 902
              +   +  A   G KT YY
Sbjct: 766 GPVVVRDFMTAVKYGWKTWYY 786


>gi|46401832|ref|YP_006924.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
 gi|45775010|gb|AAS77142.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
          Length = 811

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/801 (19%), Positives = 296/801 (36%), Gaps = 100/801 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C    DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCK-TVDVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M           +  G 
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHM-----------VSVGA 149

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
              +    + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 150 WEDM-SAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A  Q  
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQ-Q 326

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR------------KISAVALWRKML 550
           S     ++H+ +  + E  +E     A++    + +            K+SA  +    L
Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 446

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  E ++CNLG + L    +       +   T    ++ +D +I+I  +     + 
Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTMEY 559

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA 
Sbjct: 560 TAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGAC 619

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P
Sbjct: 620 EWFNRTKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMP 675

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + GV+ SI+P  + + +K +       +     +       W+  M        
Sbjct: 676 GESSSVLLGVTNSIEPPRKIVSIKGSAVNKVIAIAPGATD-------WETLMS------- 721

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK---- 884
                           +  A+++D +  I+  +  QK+  Q+ S N+Y D    +     
Sbjct: 722 ----------------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIP 765

Query: 885 ---LDFIYRQAWLMGLKTTYY 902
              +   +  A   G KT YY
Sbjct: 766 GPVVVRDFMTAVKYGWKTWYY 786


>gi|326632982|ref|YP_004306571.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
 gi|321272176|gb|ADW80068.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
          Length = 776

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/801 (19%), Positives = 296/801 (36%), Gaps = 100/801 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C    DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCK-TVDVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M           +  G 
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHM-----------VSVGA 114

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
              +    + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 115 WEDM-SAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A  Q  
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQ-Q 291

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR------------KISAVALWRKML 550
           S     ++H+ +  + E  +E     A++    + +            K+SA  +    L
Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  E ++CNLG + L    +       +   T    ++ +D +I+I  +     + 
Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTMEY 524

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA 
Sbjct: 525 TAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGAC 584

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P
Sbjct: 585 EWFDRTKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMP 640

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + GV+ SI+P  + + +K +       +     +       W+  M        
Sbjct: 641 GESSSVLLGVTNSIEPPRKIVSIKGSAVNKVIAIAPGATD-------WETLMS------- 686

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK---- 884
                           +  A+++D +  I+  +  QK+  Q+ S N+Y D    +     
Sbjct: 687 ----------------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIP 730

Query: 885 ---LDFIYRQAWLMGLKTTYY 902
              +   +  A   G KT YY
Sbjct: 731 GPVVVRDFMTAVKYGWKTWYY 751


>gi|264678224|ref|YP_003278131.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
 gi|262208737|gb|ACY32835.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
          Length = 797

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/659 (22%), Positives = 258/659 (39%), Gaps = 80/659 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCSTPT 357
            +L ++Y    +G + E  Q  F RVA  LA  E  + +   E   L +     + +   
Sbjct: 12  DVLAEKYL--ADGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67

Query: 358 LFNSG-TRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
           +  +G      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  +   FM+ V  +A W L      S+     G             
Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELVHVASPSEAQIQAGAH----------- 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++   A ALW  ++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQISATNPCGEQ 292

Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LG + L     +       FD +   + +   VR+LDNV+D     +
Sbjct: 293 PLPP----YGCCDLGPVILTRFVRDSFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + ++     R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+
Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G +  F    + +  F                     RLP  EL+  ++  G+RNS+ 
Sbjct: 409 EKGVFPLFNAKQYLKSGF-------------------AKRLP-KELRATIRKHGLRNSHL 448

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT T++       S  I+P++   Y +   + +      + V +   R        
Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQF-YTVQDHAYRL------- 500

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                +    G+   +PD       +A E+     +      Q ++D + S  + +    
Sbjct: 501 -----YKAMHGDEAPLPDC----FVSALELSASEHVAMMRCVQPFVDTSISKTVNIPADY 551

Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             +    +Y + W +GLK     R         ST       L+  P     ++ +S+ 
Sbjct: 552 PFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLST--DSASTLSQAPTDKSQTAINSVS 608


>gi|59897233|gb|AAX12028.1| ribonucleoside-diphosphate reductase alpha chain [Enterobacteria
           phage T5]
          Length = 776

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/801 (19%), Positives = 296/801 (36%), Gaps = 100/801 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C    DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCK-TVDVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M           +  G 
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHM-----------VSVGA 114

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
              +    + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 115 WEDM-SAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A  Q  
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQ-Q 291

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR------------KISAVALWRKML 550
           S     ++H+ +  + E  +E     A++    + +            K+SA  +    L
Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------- 594
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469

Query: 595 ------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  E ++CNLG + L    +       +   T    ++ +D +I+I  +     + 
Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTMEY 524

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA 
Sbjct: 525 TAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGAC 584

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P
Sbjct: 585 EWFNRTKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMP 640

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + + + GV+ SI+P  + + +K +       +     +       W+  M        
Sbjct: 641 GESSSVLLGVTNSIEPPRKIVSIKGSAVNKVIAIAPGATD-------WETLMS------- 686

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK---- 884
                           +  A+++D +  I+  +  QK+  Q+ S N+Y D    +     
Sbjct: 687 ----------------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIP 730

Query: 885 ---LDFIYRQAWLMGLKTTYY 902
              +   +  A   G KT YY
Sbjct: 731 GPVVVRDFMTAVKYGWKTWYY 751


>gi|9629835|ref|NP_045319.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 1]
 gi|1710388|sp|P50646|RIR1_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|995643|emb|CAA90929.1| UL39 [Bovine herpesvirus 1]
 gi|1149579|emb|CAA88900.1| UL39 [Bovine herpesvirus 1]
 gi|2653308|emb|CAA06094.1| ribonucleotide reductase large subunit [Bovine herpesvirus type
           1.1]
          Length = 787

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/664 (25%), Positives = 279/664 (42%), Gaps = 64/664 (9%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLA---LKET-------EKEKRAVEF 342
           LGLQ      + Y   + G  IE    FF+R+A   A   ++E         +       
Sbjct: 133 LGLQSALKYEEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 192

Query: 343 YNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
           +N     L     + +TP +  +G     L+SC+L    V      +     E A +   
Sbjct: 193 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLN 252

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G  +       +         +G++  LK+ +  A+A+N   +R   +C YLE WH
Sbjct: 253 RGGIGISFQSFDRAVSR-----DCKRGIMGALKLLDSMAMAINSDSERPTGICVYLEPWH 307

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509
            DV   L++R     D+  R  ++ +  W+PDL   R        +   WTLF  D  S 
Sbjct: 308 CDVRAVLNMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLFD-DRASH 366

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L  L+G  F   YE  ER+    E      +    L   ++  +  TG P++ FKD CN 
Sbjct: 367 LSRLHGPAFTAEYERLEREGLGVE-----TVPVQDLAFLIVRSIVMTGSPFVMFKDACNR 421

Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
                  G  +  SNLCTEI   +S +   VCNL S+NL       +     FD+  L++
Sbjct: 422 HYHMDTAGDALTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALAFDFAALST 481

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
              TA   ++ ++    +  EKA +    HR++G+G  G  + L  L +   SP A  + 
Sbjct: 482 AAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLN 541

Query: 684 DESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            E  E +    ++ S  L +     +  F  S + +G+ P D             +  + 
Sbjct: 542 VEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYE---------GVVLSL 592

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+    
Sbjct: 593 PRAWARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRP 652

Query: 803 NSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN--IERIPDDLKKIHATAFEIDPMWLI 857
           N  L+  L++   R+      +  L     S+     +  P        TAFE D   LI
Sbjct: 653 NLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLI 712

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
           +  + R  ++DQ+QS++L++ EP   K+       +   A+  GLKT  YY + R AT+ 
Sbjct: 713 DLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNN 772

Query: 912 EKST 915
              T
Sbjct: 773 GVFT 776


>gi|265752122|ref|ZP_06087915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236914|gb|EEZ22384.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 848

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 290/725 (40%), Gaps = 113/725 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    +D  + A+ L+Y   F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MKKQTYTYDEAFEAS-LQY---FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EVARIEAKYKNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P                         D  +    ++I A ALW+K++   +++  
Sbjct: 232 YKQQYP------------------------VDSDQPVFTKEIDASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEK 645
                 FD+D     +  A R++D++ID+                          H  EK
Sbjct: 324 YTRDAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  + + Y + +A E +++  + I+  A  +SV +A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA++ +         F    I  L E                 L + +K  G RN  C+ 
Sbjct: 444 GAFAIYDSEREKNNPF----INRLKEADP-------------NLYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E ++   
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIVFHH 544

Query: 825 KYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           K+ +    N            I+ + +      AT+ ++D +  ++   R QKW+D + S
Sbjct: 545 KFVEWMTVNGYDPTKRYTQEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSIS 604

Query: 873 LNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + + L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P
Sbjct: 605 VTINLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKP 664

Query: 932 NSSTH 936
            +   
Sbjct: 665 PTVVE 669


>gi|212691080|ref|ZP_03299208.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
 gi|212666312|gb|EEB26884.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
          Length = 848

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/722 (21%), Positives = 281/722 (38%), Gaps = 115/722 (15%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
              D               F  + L  ++  ++Y +  + G+  E  P+    R+A  +A
Sbjct: 6   YTYDEAFEASLQY------FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVA 59

Query: 330 LKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLY 381
             E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D   
Sbjct: 60  RIEAKYKNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYG 119

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q 
Sbjct: 120 AIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQD 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       +  
Sbjct: 180 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQ 234

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  +    ++I A ALW+K++   +++  P +
Sbjct: 235 QYP------------------------VDSDQPVFTKEIDASALWKKIVHNAWKSAEPGV 270

Query: 562 TFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            F D     S             S+N C EI L         C L +INL ++  N    
Sbjct: 271 LFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTR 326

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKK 648
              FD+D     +  A R++D++ID+                          H  EK  K
Sbjct: 327 DAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYK 386

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + +A E +++  + I+  A  +SV +A+ERGA+
Sbjct: 387 KSGQGRRTGVGITAEGDMLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAF 446

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +         F    I  L E                 L + +K  G RN  C+ IAP
Sbjct: 447 AIYDSEREKNNPF----INRLKEADP-------------NLYEEMKKYGRRNIACLTIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E +I   K+ 
Sbjct: 490 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIIFHHKFV 547

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +    N            I+ + +      AT+ ++D +  ++   R QKW+D + S+ +
Sbjct: 548 EWMTVNGYDPTKRYTQEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTI 607

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P + 
Sbjct: 608 NLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTV 667

Query: 935 TH 936
             
Sbjct: 668 VE 669


>gi|73748165|ref|YP_307404.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73659881|emb|CAI82488.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 585

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/638 (24%), Positives = 264/638 (41%), Gaps = 83/638 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLAL------KETEKEKRAVEFY 343
                    +L  RY     +GS  E P+  F RVA  +A       ++ +    A EFY
Sbjct: 1   MKLSGNAKIVLEKRYLKRDGDGSITESPEDMFRRVADAVAAAENAYNQQGKAACWADEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +++   F+ ++PTL N+G     LSSCF+  V D + GI  A+ E  ++ +Y GG G  
Sbjct: 61  RMMTGLEFLPNSPTLLNAGRELGLLSSCFVLPVEDSVEGIAKAIGEAMIIHQYGGGTGFA 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R     I   +  + G +  + V ++ A  + Q G R G   A L   H D+ +F+
Sbjct: 121 FDTIRPEDTPIKSGHNVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    D+   + +      + D F+++V +   + L +P                   
Sbjct: 181 RAK----DEGNHSANFGINIALTDSFIQKVRRGEDYELINPRTGE--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++
Sbjct: 222 ------------VTGSLSASDVFYRIAQSAWETGDPGIMFIDRINKDNPTPQLGEFVTTD 269

Query: 584 LCTEITLNSSSEETAVCNLGSINL--LAHFANNQF--DYDKLASTIRTAVRVLDNVIDIN 639
            C    L      T    LG+INL  +A    N F  DY +L   I  A+R LD+V+++N
Sbjct: 270 PCGGQPLLPYESAT----LGTINLSLMALKEGNCFGVDYLRLGKLIAKAIRFLDDVLEVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + I + +++    R IGLG MGF   L  L I Y S +AV +AD  M F++     AS 
Sbjct: 326 RYPIPEVERAAKATRKIGLGFMGFAEMLIKLGIRYDSEQAVSLADRLMTFVNETVNKASE 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG++ +F G+++ +                                        R
Sbjct: 386 ELALERGSFPAFAGNIYAKSG----------------------------------AKPRR 411

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+ C+    T T + I   S  I P Y  + V++ + G     +N       ++R  ++ 
Sbjct: 412 NATCLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHTFEETARERGFFNP 471

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L     S  N   IP D +++  TA +I P W I   +  QK  D A S  +   
Sbjct: 472 VLIEKL-LTGESPQNCPEIPRDYRRLLVTARDIQPEWCIRVQAAFQKHTDNAISQTVNFP 530

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
              + + +  ++ ++  +GLK     R  S       T
Sbjct: 531 KSATVEDIAELFLKSHELGLKGVTAYRDSSRDVQVLCT 568


>gi|237712420|ref|ZP_04542901.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726611|ref|ZP_04557092.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435137|gb|EEO45214.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453741|gb|EEO59462.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 848

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/722 (21%), Positives = 281/722 (38%), Gaps = 115/722 (15%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA 329
              D               F  + L  ++  ++Y +  + G+  E  P+    R+A  +A
Sbjct: 6   YTYDEAFEASLQY------FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVA 59

Query: 330 LKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLY 381
             E + +    A + Y LL  F ++    S  T   +  +   LS+CF+  +    D   
Sbjct: 60  RIEAKYKNGLNAQQLYELLDHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYG 119

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q 
Sbjct: 120 AIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQD 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       +  
Sbjct: 180 G-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQ 234

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P                         D  +    ++I A ALW+K++   +++  P +
Sbjct: 235 QYP------------------------VDSDQPVFTKEIDASALWKKIVHNAWKSAEPGV 270

Query: 562 TFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            F D     S             S+N C EI L         C L +INL ++  N    
Sbjct: 271 LFWDTIIRESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNPYTR 326

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINC------------------------HTIEKAKK 648
              FD+D     +  A R++D++ID+                          H  EK  K
Sbjct: 327 DAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYK 386

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + +A E +++  + I+  A  +SV +A+ERGA+
Sbjct: 387 KSGQGRRTGVGITAEGDMLAAMGLRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAF 446

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +         F    I  L E                 L + +K  G RN  C+ IAP
Sbjct: 447 AIYDSEREKNNPF----INRLKEADP-------------NLYEEMKKYGRRNIACLTIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +    +   V+E    D ++E ++   K+ 
Sbjct: 490 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDPQTHVDFVDETG--DAFEEYIVFHHKFV 547

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +    N            I+ + +      AT+ ++D +  ++   R QKW+D + S+ +
Sbjct: 548 EWMTVNGYDPTKRYTQEEIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTI 607

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S + V  ST K    K   +P   P + 
Sbjct: 608 NLPNDVDEALVNRLYVEAWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTV 667

Query: 935 TH 936
             
Sbjct: 668 VE 669


>gi|88800235|ref|ZP_01115803.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
 gi|88777081|gb|EAR08288.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
          Length = 716

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/672 (20%), Positives = 254/672 (37%), Gaps = 71/672 (10%)

Query: 288 ERD----FAFEYLGLQILYDRYFLHINGSRIEMP-----QAFFMRVAMGLALKETEKEKR 338
           ERD       +   L I   +Y L  +      P     +A F RVA  L+  E  K K+
Sbjct: 8   ERDNCIVIDHQDASLDIWDSKYRLKDSQG---TPVDADIEATFARVAEALSSVEKNKAKK 64

Query: 339 AVEFYNLLSSFHF--MCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENA 391
                  L +     + +   + N+G    +      +     T+ D + GI   + E  
Sbjct: 65  KEWHEKFLWALENGAIPAGRIVSNAGALEHKPATSTINCTVSGTIEDSMDGILEKVHEAG 124

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +  K   G+G +++ +R   A + G    + G + F+ + +     V+  G R+GA  A 
Sbjct: 125 LTLKAGCGIGYEFSTLRPKNAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMAT 184

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD------ 505
            +  H DV +F+  ++  G    R    N +  I   FM+ V  +  W L  P       
Sbjct: 185 FDVSHPDVVDFIRAKREDG----RLRQFNLSLLITMEFMEAVKNDTDWPLVFPVSEAEVL 240

Query: 506 ----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
               +V++   +  K++ +     +        +V+R I A  LW  ++T  ++   P  
Sbjct: 241 RDGLDVNNPEQVIWKDWHVKDPYLQNDKGEIACRVYRIIKARNLWNVIMTSTYDYAEPGF 300

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQF 616
              D  N  +       + ++N C E  L         C LGS+NL          N +F
Sbjct: 301 ILIDKVNEYNNNWFCETIRATNPCGEQPLPPYGS----CLLGSVNLTRFVEDPFTENAKF 356

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DK    +R   R+LDNV++IN   + + +      R  G+G +G  S + +L + Y  
Sbjct: 357 NWDKFHEVVRIFTRMLDNVVEINGLPLPEQRDEITRKRRHGMGYLGLGSTITMLRMKYGD 416

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLL 729
             +V   +E  + ++      +++LA+E+G     +            +     D   + 
Sbjct: 417 EASVAFTEEVTKAMALAGWETALDLAKEKGPAPIMEEEFEITHEMVRKRPELLKDGYQVG 476

Query: 730 AEVRDELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIAN--ICGVSQS 781
            ++   +   + SR          EL   +  +G R ++  +IAPT TI+       S  
Sbjct: 477 DKLPGRILHAKYSRYMQQINDIAPELVDELAKVGARFTHHSSIAPTGTISLSIANNASNG 536

Query: 782 IDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           I+PS+ + Y ++ +         V+ F    L  R L           +D ++   +   
Sbjct: 537 IEPSFAHHYSRNVIRAGKKSKEKVDVFSFELLAYRKL----------VNDKAMPYSDEPE 586

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGL 897
             L     T+  ++P   ++  +  Q WID + S    +           IY  A+  GL
Sbjct: 587 AQLPDYFITSDSVEPKQHVDIQAASQIWIDSSISKTANVPTDYAFDSFKDIYLYAYEQGL 646

Query: 898 KTTYYLRSRSAT 909
           K     R     
Sbjct: 647 KGCTTFRFNPEA 658


>gi|282858613|ref|ZP_06267775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
 gi|282588617|gb|EFB93760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
          Length = 862

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/715 (19%), Positives = 274/715 (38%), Gaps = 100/715 (13%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
               + L Y   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +  
Sbjct: 11  EAFKSALNY---FKGDELAARVWVNKYAMKDSFGNIYEQSPEDMHWRIANEVARIEKKYA 67

Query: 337 KR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
               A E + LL  F ++    +       + Q   LS+CF+  +    D    I    +
Sbjct: 68  NPMGAAEVFELLDHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLEGNADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D++ +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDFSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P    
Sbjct: 187 MLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMEAAVNDKPYIQQYP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                +       +++SA  +W K++   +++    + F D   
Sbjct: 239 --------------------INADRPSFTKEVSAKQIWEKIVHNAWKSAELGVLFWDTIL 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
             S       +    + T             C L S+NL ++  +      +FD++  A 
Sbjct: 279 KESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTDHARFDFETFAK 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            ++ A R++D+++D                           H  EK K  +   R  G+G
Sbjct: 339 HVQLAQRIMDDIVDLEMEKIDLILNKIKSDPQSDEVKGAEYHLWEKIKDKSGKGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  + + Y + EA   + E  + ++ +A  +SV +A+ERG +  F        
Sbjct: 399 ITAEGDMIAAMGLRYGTQEATNFSVEVHKTLALNAYRSSVAMAKERGCFEIFDAKREQNN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F +   G  A                 +L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PFILRLKGEDA-----------------QLYADMVEYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYH------D 828
             I+P +  +Y  +  ++ +   V+   V+E+    ++  ++    ++ ++ +       
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNEPDVHVDFVDEVGDSFEEYIVYHSKFLTWMQVNGIDAAKK 561

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DF 887
            S   I+ +        ATA ++D +  +      QKW+D + S+ + L     + L + 
Sbjct: 562 YSQDEIDALVKQSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNNVDETLVNK 621

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +Y +AW  G K     R  S + V  S  K    +       D N++      P 
Sbjct: 622 LYIEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKEETQTSEKDLNAAIEHHEPPC 676


>gi|154252043|ref|YP_001412867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
 gi|154155993|gb|ABS63210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 771

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/623 (23%), Positives = 253/623 (40%), Gaps = 87/623 (13%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCS 354
           QI   +Y LH  +G+ ++      + RVA  LA  E  + +   A  F+  ++ + F+ +
Sbjct: 7   QIWDMKYRLHGPDGTPVDLTVDDSWRRVANALAEAEAPEARAHWAKRFHEAMAGYRFLPA 66

Query: 355 TPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
              L  +GT       +   +  +PD + GIF  L+E A+  +  GG+G D++ +R  GA
Sbjct: 67  GRILAGAGTGRDVTLFNCFVMGEIPDTMEGIFQNLKEAALTMQQGGGIGYDFSTLRPKGA 126

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            + G    + G + F+ V +     +   G R+GA+ A +   H D+E F++ ++  G  
Sbjct: 127 PVKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQEPG-- 184

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R    N +    D FM  V  +A W L            +G                 
Sbjct: 185 --RLTMFNLSVLATDAFMAAVKADADWEL-----------TFGG---------------- 215

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
              VF+ + A ALW +++   +    P + F D  N R+   +   +H++N C E  L  
Sbjct: 216 --TVFKTLKARALWDRIIAATYAYAEPGVIFIDRINARNNLYYAETIHATNPCGEQPLPP 273

Query: 593 SSEETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  C LGSINL A        N   D  +L+  +  AVR +DN ID++   + + +
Sbjct: 274 ----YGACLLGSINLAALVKEPFTENAHIDESELSELVHVAVRAMDNTIDVSRFPLPEQR 329

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R IGLG+ G   AL +    Y S  +V +  + M+ +S  A  ASV++A+E+G 
Sbjct: 330 HEATAKRRIGLGVTGLADALIMCRARYGSEASVTLIRKWMKVLSRAAYLASVDIAKEKGP 389

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F            ++I  L +                +++  +   G+RN+   +IA
Sbjct: 390 FLLF----VADAYLAGETISALDK----------------DIRDAIAEHGIRNALVTSIA 429

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT TI+   G  S  I+P +   Y +  +  D T     + ++  ++             
Sbjct: 430 PTGTISLFAGNVSSGIEPVFAYGYKRKVLMPDGTRREEHVRDQAVEK------------- 476

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
                G    +PD        A ++ P   I   +  Q +ID + S  + +    S    
Sbjct: 477 FREMFGAEAALPD----YFVNAQDLSPAAHIAVQAAVQDYIDSSISKTINVPADISFDDF 532

Query: 886 DFIYRQAWLMGLKTTYYLRSRSA 908
             +Y  A+  GLK     R    
Sbjct: 533 KSVYMDAYEKGLKGCTTYRPSDV 555


>gi|253995423|ref|YP_003047487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
 gi|253982102|gb|ACT46960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
          Length = 721

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/659 (21%), Positives = 264/659 (40%), Gaps = 66/659 (10%)

Query: 297 GLQILYDRYFLHI-NGSRIEMPQAF---FMRVAMGLALKETEKEKRAVEFYNLLSSFH-- 350
            L I   +Y L    G  ++        ++RVA  LA  ET +EKRA      L +    
Sbjct: 25  SLDIWDKKYRLKSKQGENVDA--DMDASYLRVARALADVETTEEKRAEWHEKFLWALRRG 82

Query: 351 FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            + +     N+G    +      +      + D +  I G + E  +  K   G+G +++
Sbjct: 83  AIPAGRITSNAGALEHKPATSTINCTVSGVISDSMDDILGKVHEAGLTLKAGCGIGYEFS 142

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  
Sbjct: 143 TLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDVTDFIKA 202

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE----------VSDLHDLYG 515
           ++  G    R    N +  I   FM+ V  +A W L  P            V+D   +  
Sbjct: 203 KRENG----RLRQFNLSCLITKEFMEAVKADAEWKLAFPVTEKESIIDNLNVNDESQVVW 258

Query: 516 KEFEIAYENYER----QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +E+ I  +   +     A +   +V++ I A  LW  +++  ++   P     D  N  +
Sbjct: 259 REWPIKGKYLTKTDGVDAGKVACRVYKTIKARRLWDVIMSSTYDFAEPGFILIDRVNEMN 318

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                  + ++N C E  L         C LGS+NL             FD+ +    + 
Sbjct: 319 NNWFCENIRATNPCGEQPLPP----YGACLLGSVNLTRFVKKPFTDEAYFDWKEYREVVA 374

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R+LDNV++IN   +++ +      R  G+G +G  S+L ++ + Y   ++++  +E 
Sbjct: 375 IFTRMLDNVVEINGLPLQQQRDEIMRKRRHGMGYLGLGSSLTMMKMKYGEEDSIKFTEEV 434

Query: 687 MEFISFHAISASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELAMN 739
              ++    S  V+LA+E+GA              L  +     D I +  ++  ++ + 
Sbjct: 435 TRVMAEEGWSVGVQLAEEKGAAPIMDEKFEITADMLAKRPEMAADGIKVGQKIAGKVLLG 494

Query: 740 RTSRLPW---DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           + SR      + L+ ++ T G+R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 495 KYSRYMQQFPEGLRNQIATKGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYARNV 554

Query: 795 M---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ F    L  R+L +   +        S    E++PD        +  I
Sbjct: 555 IREGKKSKEKVDVFSYELLAYRELINPNAMPF------SDKPEEQLPD----YFLDSSTI 604

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
                ++  +  QKWID + S  + +      +    IY  A+  GLK     R     
Sbjct: 605 MAKAHVDIQAASQKWIDSSISKTINVPTDYDFEDFKNIYLYAYDKGLKGCTTFRFNPEA 663


>gi|301750611|gb|ADK88939.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/647 (25%), Positives = 269/647 (41%), Gaps = 56/647 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEFYNL 345
                 + Y    +  R E     + R+A  LA            K     +    F+  
Sbjct: 172 SALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYFFEH 231

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           L S   + STP + N GT +   +SC+L                   L+  +G +    +
Sbjct: 232 LHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKS--------SLSAITGNVSTILS 283

Query: 406 PVRGLGAHIHGTNGKSQGVI---PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
              G+G  +   N      I   P LK  +    A N+  +R   VC Y+E WH D+   
Sbjct: 284 HNGGIGLCMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHSDIRAL 343

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLHDLYG 515
           L  R    G++ +R  ++ +A W+PDLF KR+ +         WTLF  +   DL  L+G
Sbjct: 344 LRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDLSRLHG 403

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
             FE  YE+ E+Q       +  ++    +   ++      G P+I FKD  N       
Sbjct: 404 DAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAVNRHYIYDT 457

Query: 576 VG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R  V +++ 
Sbjct: 458 QGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACVLMVNI 517

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +     E +   A
Sbjct: 518 MIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEVMLLSA 577

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +  S  L       +  F  S++ +GVF         + R            W+ L++ +
Sbjct: 578 MQTSNALCIHGAPTFRDFPKSMYSKGVFH---WERFPDARPAFPG------EWELLRRSI 628

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  L+ EL++ 
Sbjct: 629 KRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMRELRRV 688

Query: 814 --DLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  A++  L  +  S+        PD       TAF+     LI+  + R  ++D 
Sbjct: 689 FGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRAPYVDH 748

Query: 870 AQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATS 910
           +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 749 SQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|159146680|gb|ABW90784.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/647 (25%), Positives = 269/647 (41%), Gaps = 56/647 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL-----------KETEKEKRAVEFYNL 345
                 + Y    +  R E     + R+A  LA            K     +    F+  
Sbjct: 172 SALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWMEMFQYFFEH 231

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           L S   + STP + N GT +   +SC+L                   L+  +G +    +
Sbjct: 232 LHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKS--------SLSAITGNVSTILS 283

Query: 406 PVRGLGAHIHGTNGKSQGVI---PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
              G+G  +   N      I   P LK  +    A N+  +R   VC Y+E WH D+   
Sbjct: 284 HNGGIGLCMQDLNDAQANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEPWHSDIRAL 343

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLHDLYG 515
           L  R    G++ +R  ++ +A W+PDLF KR+ +         WTLF  +   DL  L+G
Sbjct: 344 LRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETGGDLSRLHG 403

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
             FE  YE+ E+Q       +  ++    +   ++      G P+I FKD  N       
Sbjct: 404 DAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAVNRHYIYDT 457

Query: 576 VG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R  V +++ 
Sbjct: 458 QGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVRACVLMVNI 517

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +     E +   A
Sbjct: 518 MIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLIAEVMLLSA 577

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +  S  L       +  F  S++ +GVF         + R            W+ L++ +
Sbjct: 578 MQTSNALCIHGAPTFRDFPKSMYSKGVFH---WERFPDARPAFPG------EWELLRRSI 628

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  L+ EL++ 
Sbjct: 629 KRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNILLMRELRRV 688

Query: 814 --DLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  A++  L  +  S+        PD       TAF+     LI+  + R  ++D 
Sbjct: 689 FGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCADRAPYVDH 748

Query: 870 AQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATS 910
           +QS+ LY+ E +   L       +   A+  GLKT  YY + R AT+
Sbjct: 749 SQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|19881199|gb|AAM00816.1|AF485080_1 large subunit ribonucleotide reductase [Staphylococcus phage Twort]
          Length = 705

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/717 (24%), Positives = 303/717 (42%), Gaps = 74/717 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K  +K T +    +  E      +EG   ++         ++     L Y  
Sbjct: 29  KEALEEDSKYIEKNTRNFDNEV--ERVRTLTKEGTYDKVFDSIPDT--IIEEMTKLAYSF 84

Query: 290 DFAFE-YLGLQILYDRYFL----HINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +F F+ ++  Q  Y+ Y +      +    +E  +   +R A+ L   +  K   A E  
Sbjct: 85  NFQFQSFMACQKFYESYAVTQYDKDDNPIFVEDYEQHNVREALYLFQDDYVK---AREML 141

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAML-AKYSGGLG 401
             L       +TP   NSG  +  +LSSC+L  V DD       + ++    +K +GG  
Sbjct: 142 IQLMEQTLQPATPVYLNSGLGKRGELSSCYLFIVDDDTIESINFITDSVRQASKNAGGCA 201

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D T +R  G  ++G    S+GVIPF K    +    NQGGKR+G+   YL  +H D+ E
Sbjct: 202 VDLTRLRPRGTEVNGVPNASKGVIPFAKNIEQSVSYFNQGGKREGSAVCYLNIFHPDIHE 261

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F   +K    D+ R   ++    IP+ FM+ + ++  +  F+  +V   +     E  ++
Sbjct: 262 FSSSKKINASDKVRLDTLSIGVTIPNKFMELLKEDKYYYTFNVYDVKQKYGFTLNEINMS 321

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E Y+   +  +I+  +  +   +   +     E+G+P++ + D  N   P + +G V  
Sbjct: 322 -EYYDIFVNDDDIRKEKYYT-RDIMTDIARTQLESGYPYVFYIDNANDNHPLKKLGKVQM 379

Query: 582 SNLCTEIT--------------LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           SNLC E+T               N +     VC LGS+NL+            L  ++ +
Sbjct: 380 SNLCCEVTQLQEVSDIFPYLQSHNDTIGNDVVCTLGSLNLVNVVEKGL-----LKESVDS 434

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +R L  V D +N   +   +K+N   RAIGLG M +   L    + Y S E+++IA+  
Sbjct: 435 GIRSLSKVTDLMNVPFLPSVQKANDELRAIGLGAMNWHGLLAKNMLSYGSRESLDIANSL 494

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MN 739
              I +++I +S+ELA+E    +  FK S +  G      I    E R + A      + 
Sbjct: 495 FSAIRYYSIKSSMELAKETGKVFKGFKESEYYTGEVFSSYIQKSHEPRTKKAKKVLEKVY 554

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W+ L K VK  GM N     +APT +I+ +   + SI P    +  +   + D 
Sbjct: 555 IPTEEDWNSLSKDVKEYGMYNGYLNNLAPTQSISYVQNATSSIMPVPSPIENRRYGNMDT 614

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +   F+                                        TA+++D   +I +
Sbjct: 615 YIPMPFMSPIT-----------------------------QFFYESETAYKLDNKRIINT 645

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ++  QK +DQA S  LY++ E    KL  +Y  AW  GLK+ YY RS++   +E  +
Sbjct: 646 SAVIQKHVDQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRSQTLKVIECES 702


>gi|49237335|ref|YP_031616.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
 gi|47060153|gb|AAT09697.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
          Length = 565

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/640 (27%), Positives = 263/640 (41%), Gaps = 118/640 (18%)

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA K +  K + A +  +      F  S+P    S T      SCFL  VPD + G+  
Sbjct: 31  TLAEKYSGGKPELAEKLRDYACKGWFGYSSPI-LTSVTGSGLPISCFLLYVPDTIEGLVD 89

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              E   L+   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+
Sbjct: 90  HTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRR 142

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P 
Sbjct: 143 GSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPK 202

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +  H                            +SA  LW ++L   F TG P++ F D
Sbjct: 203 SGAVAH---------------------------TVSARELWERILETRFRTGEPYLNFID 235

Query: 566 PCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             N       +  G  +  SNLC EI L ++++ TAVC L S+NL       ++D  +  
Sbjct: 236 TANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRET 289

Query: 623 STIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +   V +LDNVI               +A +S    R+IGLG MG+   L    IP+ 
Sbjct: 290 DLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFD 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +       I   A+ A+  LA+ERG      G                      
Sbjct: 350 SEEAVRLTGIIFRGIKSAAVRATRALAKERGEAPDLTG---------------------- 387

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                G+RN++ +A+AP A  A + G S S++P     YV    
Sbjct: 388 --------------------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTR 427

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G    VN +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   
Sbjct: 428 VGSHQAVNPYLKRDLESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRV 487

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++  A+ RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR+ +     ++
Sbjct: 488 IVRQAAERQRHLCQGQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLRTCAG----RT 543

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             K  + K N                        EC  CQ
Sbjct: 544 GHKIFEAKKNPEKT-------------------EECTACQ 564


>gi|284992284|ref|YP_003410838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
 gi|284065529|gb|ADB76467.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
          Length = 951

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/654 (20%), Positives = 240/654 (36%), Gaps = 45/654 (6%)

Query: 316 MPQ------AFFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            PQ          RV +         G    E + E    E   +L   +F  ++P  FN
Sbjct: 91  TPQRETSLRQLIDRVVLTYGAAGREHGYFASEGDAEVFEHELTWMLMHQYFSFNSPVWFN 150

Query: 361 SGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
            GT  PQ +S+CF+  V D++  I    +E  ++ K   G G + + +R     +  + G
Sbjct: 151 VGTNAPQQVSACFILAVDDEMDSILNWYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGG 209

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +    D  R   D
Sbjct: 210 TASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDIDHPDIEEFIETKAREEDKIRALRD 269

Query: 479 MNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
                 +          QNA  ++   DE     +  G EF +          R +  V 
Sbjct: 270 AGYDMDLGGKDITSVQYQNANNSVRVSDEFMRAVE-DGDEFGLR--------ARLDGSVI 320

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
             + A  L+RK+    +E   P I + D  N        G +++SN C+E     +S   
Sbjct: 321 ETVDAKTLFRKVTRAAWECADPGIQYDDTINDWHTNPETGRINASNPCSEYMSLDNSS-- 378

Query: 598 AVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             CNL S+NL+    +   FD       +   +  +D  I       +   ++   +R +
Sbjct: 379 --CNLASLNLMKFLEDDGTFDSRNFVKAVELVITAMDISICFADFPTDPIGETTRAYRQL 436

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G     + L      Y S     +A      ++  A   S ELA   GAY  F  +  
Sbjct: 437 GIGYANLGALLMATGHAYDSRGGQTLAAAITSLMTGTAYRRSAELAGIVGAYEGFARNAD 496

Query: 717 DQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                          +R    D+  + + +   W E  +     G RN+    +APT TI
Sbjct: 497 AHARVMRKHAAANDAIRPVGADDADVLKAATAQWQECLELGADFGWRNAQASVLAPTGTI 556

Query: 773 ANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             +    +  I+P +  +  K  + G    + +  V    +   + +  I  +  +    
Sbjct: 557 GFMMDCDTTGIEPDFSLVKYKKLVGGGSMQIVNQTVPRALRSLGYQDEQIEAIVEYISEH 616

Query: 832 GNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
           G++   P    +  ++   A     I PM  +   +  Q +I  A S  + + E  + + 
Sbjct: 617 GHVVDAPSLRPEHYEVFDCAMGERAISPMGHVRMMAAVQPFISGAISKTVNMPETATVED 676

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           ++ IY Q W +GLK     R         S  K               + +H +
Sbjct: 677 VENIYFQGWKLGLKALAIYRDNCKVGQPLSDAKAKKADTKVEAAAPATALSHPV 730


>gi|194246585|ref|YP_002004224.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
 gi|193806942|emb|CAP18374.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
          Length = 830

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/731 (20%), Positives = 286/731 (39%), Gaps = 76/731 (10%)

Query: 214 PNY-----AKVTARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           P +       +     ++ L +  E L   +K+  K        L  +    Y+ E    
Sbjct: 138 PKWIMLNNQVIDENGNIKDLTKDQEALEIYFKEEIKPKLKYFYSLKAKI--DYLLENNYY 195

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMR 323
                +   ++ +     + Y   F F  ++G+   Y+ Y L        +E  +   + 
Sbjct: 196 EKDFFNHYTYEQIKTIYQIAYAEKFQFASFMGIFKFYNDYALKNRNKTKYLETYEDRLVV 255

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
            A+  A         A +    L   +F  +TPTL NSG     +  SCFL    D L  
Sbjct: 256 NALYHAHG---NFILAKKLIKSLIQQNFTPATPTLLNSGKKYRGEFVSCFLIEGGDSLND 312

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I    + +  L+K  GG+  + + +R  G  I       +GV+   K+ +      +Q G
Sbjct: 313 IARIFEFSMQLSKIGGGVSINLSNLRAKGETIKKNANVCKGVVGVCKLLDHGFRYADQMG 372

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+++FL+ +K   D+  R   ++    IPD  ++    N    +F
Sbjct: 373 QRNGAGAVYLNVFHADIKDFLNTKKLNADEDVRVKTLSLGVVIPDKMLELAKNNEMMYIF 432

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +     +  I  + +     +      + I+   L   +  +  E+G+P+I 
Sbjct: 433 YPHTVFLEYGQNFADISINMDYWYDILVKNSKIKKKIINPRNLLDLIAQLQGESGYPYIM 492

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA--------------VCNLGSINLL 608
           + D  N  +       +  SNLCTEI   + +   A               CNL S ++ 
Sbjct: 493 YCDNVNKNNMLNL--PIKFSNLCTEILQPTITSHYADYDKREEDRIGMDISCNLSSGHMG 550

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               NN      +  T+  A+ V+++V ++ +   +    K+N  +R++G G+MG    +
Sbjct: 551 NMIKNNS-----IKETVFMAMEVMNSVALNTDIAYVPGVAKANRLNRSVGFGIMGHHEFI 605

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I + S E +++ D     ++++++  S++ A+     + +F  S +  G +  +  
Sbjct: 606 AKNFIFFGSEEDLDLIDVFFNAVNYYSLLHSMQKAKTTGQKFFNFSKSKYADGSYFNNRG 665

Query: 727 GLLAEVRDELAMNRTSRL----PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            +L +      + +  +L     W ELK  V   G+ NS+ +A+AP  +I  I   + S+
Sbjct: 666 EILPKNIKVKNIFKHIKLPSNKDWTELKTNVIKYGLYNSHRLAVAPNGSIGYIMSTTPSL 725

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  Q +  ++  +         L                                +   
Sbjct: 726 TPIKQLIEERTYGNSKTYFPTPGL--------------------------------EQFS 753

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTY 901
            ++ TA++I+   LI+  +  QK IDQ  S  L +    + ++L   Y  A   G+KT Y
Sbjct: 754 FMYETAYKINKYRLIDVIATAQKHIDQGISFELGITSDITTRELQKYYLYAHYQGIKTLY 813

Query: 902 YLRSRSATSVE 912
           Y R++     E
Sbjct: 814 YTRTQKLKVNE 824


>gi|209694807|ref|YP_002262735.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
 gi|208008758|emb|CAQ78955.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
          Length = 717

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/658 (22%), Positives = 265/658 (40%), Gaps = 64/658 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKE-KRAVEFY-NLL 346
            A++   + I   +Y L    G+R++      F RVA  L+  E   E K+  E +   L
Sbjct: 17  IAYQSTSMDIWESKYCLKNKQGNRVDLSMDDTFKRVAKALSDLEQPAEQKQWNEQFLWAL 76

Query: 347 SSFHFMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +     N+G          ++     T+ D +  I G + E  +  K   G+G
Sbjct: 77  RNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIVDSMDDILGKVHEAGLTLKAGCGIG 135

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV +
Sbjct: 136 YDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVID 195

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL----------H 511
           F+  ++  G    R    N +  I + F++ V     W L  P  + +           +
Sbjct: 196 FIRAKREDG----RLRQFNLSLLITEDFVEAVKNQNDWQLIFPITLKEAKLDHMDLYSDN 251

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +   ++ +     E +      KV+R + A  LW  ++T  ++   P     D  N  +
Sbjct: 252 SVVWADWPVKEGFAENEEGLVACKVYRTMPAQNLWNIIMTSTYDYAEPGFILIDKVNQMN 311

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIR 626
                  + ++N C E  L         C LGSINL     N       FD+D   + + 
Sbjct: 312 NNWFCEEIRATNPCGEQPLPP----YGACLLGSINLTKFVRNPFTDTAFFDWDAYRNVVS 367

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
              R+LDNV++IN   +E+ +      R  G+G +G  S L +L   Y S E++   ++ 
Sbjct: 368 IFTRMLDNVVEINQLPLEQQRHEIMHKRRHGMGFLGLGSTLTMLQHKYGSIESIGFTEQV 427

Query: 687 MEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMN 739
            + ++     + ++LA E+G+    + S       L  +     D I L  +V+ ++   
Sbjct: 428 AQEMAVTGWKSGLDLAAEKGSAPIMEESFIVTAKMLRQRPEMAEDGIKLGDKVKGKVLHA 487

Query: 740 RTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYV 791
           + SR          +L  ++   G+R ++  +IAPT TI+       S  I+PS+ + Y 
Sbjct: 488 KYSRYMQQLAIIEPKLVAKIIEQGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYT 547

Query: 792 K---SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +            V+ +    L  R L ++      K    S     ++PD       TA
Sbjct: 548 RNVIKTGKKSKESVDVYSYELLAYRALIND------KAMPYSTNEENKLPD----YFITA 597

Query: 849 FEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I P   +   +  QKWID + S   N+  D P  ++   IY  A+  GLK     R
Sbjct: 598 DDITPQQHVAVQAAAQKWIDSSISKTANIPTDFP-FEEFKDIYMDAYDKGLKGCTTFR 654


>gi|154491701|ref|ZP_02031327.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
 gi|154087942|gb|EDN86987.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
          Length = 856

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 278/710 (39%), Gaps = 105/710 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVA 325
           +++     FD  + A+ L Y   F  + L  ++  ++Y L    G+  E  P     R+A
Sbjct: 9   IVNRKTYTFDEAFKAS-LDY---FTGDELAAKVWVNKYALKDAFGNIYEESPVDMHHRLA 64

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP--- 377
             +A  E +        E + L   F ++    S  T   +  +   LS+CF+  +    
Sbjct: 65  SEIARVEKKYPNPLSEEELFALFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDA 124

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   
Sbjct: 125 DSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 184

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V    
Sbjct: 185 VAQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVINGT 239

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P + S+  ++                        ++I+A  LW+K++   +++ 
Sbjct: 240 PYKQQYPIDSSEPTNV------------------------KEINAAELWKKIIHNAWKSA 275

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L +INL ++  N    
Sbjct: 276 EPGVLFWDTILRESVPDSYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTK 335

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              FD+D     +  A R++D++ID                           H  EK +K
Sbjct: 336 EAYFDFDLFRKHVILAQRIMDDIIDLESEKIEKILEKIDADPESLEVKQSERHLWEKIQK 395

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R  G+G+      +  L + Y + EA E A++  + ++  A  +SVE+A+ERGA+
Sbjct: 396 KTLQGRRTGVGITAEGDMIAALGLRYGTEEATEFAEKVQKMLALAAYRSSVEMAKERGAF 455

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +     ++  F    I  L E                EL   +   G RN  C+ IAP
Sbjct: 456 DIYDAKREEKNPF----INRLREADP-------------ELYDDMVKYGRRNIACLTIAP 498

Query: 769 TATIANICGVSQSIDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +        V+E    D ++E ++   K+ 
Sbjct: 499 TGTTSLMTQTTSGIEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFV 556

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
              + N            +E +        AT+ ++D +  +    R QKW+D + S+ +
Sbjct: 557 TWMLANGFSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTI 616

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            L     + L + +Y +AW  G K     R  S + V  ST      K +
Sbjct: 617 NLPADVTEDLVNSLYVEAWKCGCKGCTVYRDGSRSGVLLSTDNKKKKKED 666


>gi|325297273|ref|YP_004257190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
 gi|324316826|gb|ADY34717.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
          Length = 869

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/716 (21%), Positives = 277/716 (38%), Gaps = 101/716 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           ++ +    +D  Y A+ L Y   F  + L  ++  ++Y +  + G   E  P+    R+A
Sbjct: 22  IVEKQTYSYDEAYDAS-LDY---FKGDELAARVWVNKYAVKDSFGHIYEKSPEDMHWRIA 77

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP--- 377
             +A  E +      A E + L   F ++    S  T   +  +   LS+CF+  +    
Sbjct: 78  NEVARIEAKYPNGLSAQELFGLFDHFKYIIPQGSPMTGIGNDYQIASLSNCFVIGLDGSA 137

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   
Sbjct: 138 DSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 197

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +N 
Sbjct: 198 VAQDG-RRGALMMTVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMEAAVENR 252

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                               V ++I A ALW+K++   +++ 
Sbjct: 253 PYVQQFP------------------------IGSPHPMVKKEIDASALWKKIVHNAWKSA 288

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L +INL ++  N    
Sbjct: 289 EPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTP 348

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              FD+D     +  A R++D++ID                           H  EK  +
Sbjct: 349 EAYFDFDLFKKHVALAQRIMDDIIDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYR 408

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  L + Y + EA E A+   + I+  A  +SV +A+ERGA+
Sbjct: 409 KSGMGRRTGVGITAEGDMLAALGLRYGTEEATEFAERVQKTIALEAYRSSVVMAKERGAF 468

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +         F    +  L E                 L + +K  G RN  C+ IAP
Sbjct: 469 EIYDTEREKDNPF----VNRLREADPG-------------LYEEMKKYGRRNIACLTIAP 511

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++ +   V    V+E     ++  ++    ++ 
Sbjct: 512 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDENVRIDFVDETGDAFEEYLVFHHKFLAW 571

Query: 824 LKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +K +        +   I+ +        AT+ ++D +  ++   R QKW+D + S+ + L
Sbjct: 572 MKVNGYDPDKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINL 631

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
                ++L + +Y +AW  G K     R  S   V  S  K  D K        P 
Sbjct: 632 PNNVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGVLLSAKKKDDKKEEECHCKPPQ 687


>gi|299532605|ref|ZP_07045994.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
 gi|298719408|gb|EFI60376.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
          Length = 797

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/659 (22%), Positives = 257/659 (38%), Gaps = 80/659 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCSTPT 357
            +L ++Y    +G + E  Q  F RVA  LA  E  + +   E   L +     + +   
Sbjct: 12  DVLAEKYL--ADGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67

Query: 358 LFNSG-TRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
           +  +G      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  +   FM+ V  +A W L      S+     G             
Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELIHVASPSEAQIQAGAH----------- 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++   A ALW  ++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQ 292

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LG + L             FD +   + +   VR+LDNV+D     +
Sbjct: 293 PLPP----YGCCDLGPVILTRFVREAFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + ++     R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+
Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GA+  F    + +  F                     RLP  EL+  +K  G+RNS+ 
Sbjct: 409 EKGAFPLFNAKQYLKSGF-------------------AKRLP-KELRATIKKHGLRNSHL 448

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT T++       S  I+P++   Y +   + +      + V +   R        
Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQF-YTVQDHAYRL------- 500

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                +    G+   +P+       +A E+     +      Q +ID + S  + +    
Sbjct: 501 -----YKALHGDDVPLPEC----FVSALELSASEHVAMMRCVQPFIDTSISKTVNIPADY 551

Query: 882 -GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             +    +Y + W +GLK     R         ST        +  P     ++ +SL 
Sbjct: 552 PFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLST--DSAPAPSQAPTGKSQAAINSLS 608


>gi|312114419|ref|YP_004012015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219548|gb|ADP70916.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 762

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/624 (23%), Positives = 251/624 (40%), Gaps = 87/624 (13%)

Query: 299 QILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEK--EKRAVEFYNLLSSFHFMCST 355
           QI   +Y +   +G   +  +  F RVA   AL E E   +     F + ++ F F+ + 
Sbjct: 8   QIWEAKYRYTPAHGEPEQSVEETFARVARAAALAEQEASQKDWEKRFLDAMADFAFIPAG 67

Query: 356 PTLFNSGTRH-PQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT     L +CF +  + DD+  IF  ++E A+  +  GG+G+D++ +R  GA 
Sbjct: 68  RILAGAGTGRDVTLFNCFVMGEIGDDMGSIFAHVREAALTLQQGGGIGHDFSTLRPKGAP 127

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ V +     +   G R+GA+   L   H D+E F++ +     D 
Sbjct: 128 VKGVGADASGPVSFMDVWDAMCRTIMSAGSRRGAMMGTLRCDHPDIEAFIEAKA----DP 183

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  + N +  + D FM+ V  +A W L                               E
Sbjct: 184 ARLRNFNLSVLVTDAFMEAVKADARWPLTF-----------------------------E 214

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             VFR++SA  LW K++   ++   P + F D  N  +       + ++N C E  L   
Sbjct: 215 GTVFREVSARGLWLKIMRSAYDYAEPGVIFIDRVNAANNLAWCETISATNPCGEQPLPP- 273

Query: 594 SEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 C LGSINL A          + D  +L   +  AVR+LDN+ID++ + +   ++
Sbjct: 274 ---YGACLLGSINLAALIEKPFEPEARLDEARLERLVPVAVRLLDNIIDVSRYPLPSQER 330

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+ G   AL      Y       +A   M  IS  A  AS  LA+E+GA+
Sbjct: 331 EAKAKRRIGLGVTGLADALIFCGAHYGEESGRALAASWMARISELAYEASAALAKEKGAF 390

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F    +    FP                          L+K ++  G+RN    +IAP
Sbjct: 391 PLFDAEAFLARPFPASLPPP--------------------LQKAIRQHGIRNGVLTSIAP 430

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+ + G  S  ++P +   + +  +  D +  +  + +   +            +  
Sbjct: 431 TGTISLLAGNVSSGVEPVFDFEFSRRVLQPDGSARHETVEDYAVR----------IFRER 480

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            GS        + L      A E+ P   +E  +  Q+ +D + S  +        +  +
Sbjct: 481 QGS--------EPLPPAFVAARELTPAQHLEMQAALQRHVDASISKTVNCPASIPFEDFE 532

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            +Y  A+ +GLK     R  + T 
Sbjct: 533 MLYADAYRLGLKGCTAYRPNAVTG 556


>gi|226942250|ref|YP_002797323.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
 gi|226717177|gb|ACO76348.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
          Length = 713

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/666 (23%), Positives = 265/666 (39%), Gaps = 70/666 (10%)

Query: 290 DFAFEYLGLQILYDRY-FLHINGSRIE-----MPQAFFMRVAMGLALKETEK--EKRAVE 341
           D   +     I   +Y  +  +G+ ++       Q    R+A  LA  E E   E    +
Sbjct: 14  DIPLQAASEDIWAQKYRLVEPDGTPVDADIDATRQ----RIARALAEIEREDVREHWYRQ 69

Query: 342 FYNLLSSFHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           F   L +     +   + N+G +        ++     T+ D +  I   +QE  +  K 
Sbjct: 70  FLWALRNGAI-PAGRIVANAGAQVWRPATSTINCTVSGTLYDAMDDILAKVQEAGLTLKA 128

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
             G+G +++ +R  GA + G   ++ G + F+ + +     V+  G R+GA  A  +  H
Sbjct: 129 GCGIGYEFSTLRPHGAFVSGAGARTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVAH 188

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY-G 515
            DV EF+  ++  G    R    N +  I D FM+ V  +A W L  P    +  +L  G
Sbjct: 189 PDVREFIRAKREDG----RLRQFNLSLLITDEFMQAVENDAEWPLVFPVHPKEAAELDLG 244

Query: 516 KEFEIAYENY-------ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
              ++ + ++        R   +   +++ K+ A  LW  ++   ++   P     D  N
Sbjct: 245 DPNQVLWRDWPLHEGYPVRDDGKVACRIYGKVRARHLWDMLMVSTYDFAEPGFILIDRVN 304

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
             +       + ++N C E  L         C LGS+NL A          +FD+++   
Sbjct: 305 QLNNNWWCEEIRATNPCGEQPLPPYGS----CLLGSVNLTAFVEEPFTARARFDWERFRQ 360

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R   R+LDNV++IN   ++  ++     R  G+G +G  SAL LL + Y SPEA    
Sbjct: 361 VVRIFTRLLDNVVEINNLPLQAQRREILDKRRHGMGFLGLGSALTLLRLRYGSPEACVFT 420

Query: 684 DESMEFISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDEL 736
           +E    ++      ++ELA+E+G        F+     L  +     D   +   V   +
Sbjct: 421 EEVAREMALVGWEVALELAKEKGPAPLLAQEFEVTAKMLRQRPEMATDGYRVGDRVAGRV 480

Query: 737 AMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQN 788
              R SR          EL   +   G R ++  +IAPT TI+       S  I+PS+ +
Sbjct: 481 LHARYSRYMQRLAEFAPELIAALAEQGARFTHHTSIAPTGTISLSLANNASNGIEPSFAH 540

Query: 789 LYVKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            Y ++ +         V  F    L  R L D           G      R+PD      
Sbjct: 541 QYSRNLIRPGRKAKEKVEVFSYELLAYRALVDPQ------AQPGGDEPAHRLPD----YF 590

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            +A +I P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     
Sbjct: 591 VSADDIGPTQHVDIQAAAQKWVDSSLSKTANVPTDYP-FEAFKDIYRYAWRQGLKGCTTF 649

Query: 904 RSRSAT 909
           R     
Sbjct: 650 RFNPTA 655


>gi|224027035|ref|ZP_03645401.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
 gi|224020271|gb|EEF78269.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
          Length = 847

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/716 (20%), Positives = 279/716 (38%), Gaps = 103/716 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    +D  Y    L+Y   F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKTYSYDEAY-NASLQY---FKGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      A E ++LL  F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EVARIEAKYPNALSAQELFDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGLEGAAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVEGRM 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P +                             V ++I+A ALW+K++   +++  
Sbjct: 232 YTQQFPID------------------------SDHPMVSKQINASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVINPFTPE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
            +FD+D     I  A R++D++ID                           H  EK  + 
Sbjct: 328 ARFDFDLFKKHIALAQRIMDDIIDLELEKIERIMEKIDADPESEEVKGAERHLWEKIYRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R  G+G+      L  + + Y + EA E +++  + ++  A  +SV +A+ERGA+ 
Sbjct: 388 SGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEQVHKTVALEAYRSSVNMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +         F    I  + +                 L + +   G RN  C+ IAPT
Sbjct: 448 IYDAEREKNNPF----INRIKDADP-------------ALYEDMVRYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE-----------LKQRDLWD 817
            T + +   +  I+P +  +Y+ +  ++ +   V+   V+E             +   W 
Sbjct: 491 GTTSLMTQTTSGIEPVFMPVYMRRRKVNPNDANVHVDFVDETGDAFEEYVVFHHKFLTWM 550

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E    D   H  +   I+ +        AT+ ++D +  ++   R QKW+D + S+ + L
Sbjct: 551 EVNGYDPNKH-YTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINL 609

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
                ++L + +Y +AW  G K     R  S   V  ST K    +        P 
Sbjct: 610 PNSVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGVLISTKKDKKKEEEECHCKPPQ 665


>gi|304382861|ref|ZP_07365344.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
 gi|304336046|gb|EFM02293.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
          Length = 855

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/696 (20%), Positives = 275/696 (39%), Gaps = 103/696 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           + + +   +D  Y A+ LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   MENNNTYSYDEAYKAS-LKY---FEGDELAARVWVNKYAMKDSFGNIYEQSPENMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E +     +A E ++LL  F ++    +       + Q   LS+CF+  +    
Sbjct: 57  NEIARIENKYANPLKAEEVFSLLDHFRYIVPAGSPMTGIGNNHQVASLSNCFVIGLDGDA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + VR  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLSHVRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+      
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDGR 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                               V ++I A +LW+K++   +++ 
Sbjct: 232 PYRQQFP------------------------IAGDNPMVSKEIDARSLWQKIVHNAWQSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L SINL ++  +    
Sbjct: 268 EPGVLFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSINLFSYVIDPFTD 327

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
             +FD+D     +  A R++D+++D                           H  EK K 
Sbjct: 328 HARFDFDTFKKHVGMAQRLMDDIVDLELEKIDAIMNKVQDDPQSGEVKGAEYHLWEKIKD 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + EA   + E  + ++  A  +S  +A+ERGA+
Sbjct: 388 KSSKGRRTGVGITAEGDMLAAMGLRYGTEEATAFSVEVHKTLALSAYRSSAIMAKERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +      +  F    +  L E                EL + +   G RN  C+ IAP
Sbjct: 448 AVYDAQREAKNPF----VLRLKEADP-------------ELYELMVKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++   T V+   V+E+    ++  ++    +  
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPSDTNVHIDFVDEVGDSFEEYIVYHPKFMQW 550

Query: 824 LKYHDGSIGNIERIPDDLKKI-------HATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           +K + G         D++  +        ATA ++D +  +      QKW+D + S+ + 
Sbjct: 551 MKTN-GYDTEKRYTQDEIDALVAKSPYNKATANDVDWLMKVRMQGAIQKWVDHSISVTVN 609

Query: 877 LDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
           L     + L + +Y +AW  G K     R  S   V
Sbjct: 610 LPNDVDEALVNRLYVEAWRSGCKGCTIYRDGSRAGV 645


>gi|39938540|ref|NP_950306.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
 gi|39721649|dbj|BAD04139.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
          Length = 769

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/703 (21%), Positives = 274/703 (38%), Gaps = 69/703 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  ++           L  E      E         +      +  +   + Y++
Sbjct: 100 KEALQSFLQEGVLPKLKRFATL-QEKLTFLQENEYYESAFLQKYTHSQIKEIYQ-IAYQK 157

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F  ++G    Y  Y L        +E  +      A+  A  + E  KR +     L
Sbjct: 158 NFTFPTFMGAFKFYHDYALKTRDKQHYLETYEDRLSVNALYHAKGDFEIAKRLIVS---L 214

Query: 347 SSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T
Sbjct: 215 INQDFTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINIT 274

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G  +GV+   K+ + +    +Q G R GA   YL  +H D+ +FL  
Sbjct: 275 NLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQIGLRTGAGAVYLNVFHSDIIDFLST 334

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K + D+  R   ++    +P+  ++    N     F P  V   +     +  +  + +
Sbjct: 335 KKLSADEDVRVKTLSLGVVVPNKMIELARNNEVMYTFFPHTVFLEYGKNFADIAVDMDYW 394

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                       + I+   L   +  M  E+G+P++ F D  N  +       V  SNLC
Sbjct: 395 YDILVANPKVQKKAINPRQLLELIAHMQGESGYPYLMFCDNTNQANTSDL--KVKFSNLC 452

Query: 586 TEITLNSSSEET--------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           TEI   + +                   CNL S ++     NN      +  T+  A+ V
Sbjct: 453 TEILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNT-----IQETVFMAMEV 507

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           ++ V +  N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     +
Sbjct: 508 MNCVSENTNISYVPAVAKANFINRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAV 567

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLP 745
           +F+++  S   A+     +  F+ S +  G +  +   +L +      M +     ++  
Sbjct: 568 NFYSLLHSCNKAKTTGKKFYRFEQSKYADGSYFDNRGEILPKTAKIKKMFQNITLPTQKD 627

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +LK+ V   G+ NS+ +A+AP  +I  I G + S+ P  Q +  ++  +         
Sbjct: 628 WHQLKQDVMQFGLYNSHRLAVAPNGSIGYIMGATPSLTPVKQLVEERTYGNSKTYCPMPA 687

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                                     ++ TA++++   LI+  +  QK
Sbjct: 688 L--------------------------------KQTSFMYTTAYKMNKYDLIDVIAIAQK 715

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +DQ  S  L +    + ++L   Y  A    +KT YY R++ 
Sbjct: 716 HVDQGISFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQK 758


>gi|325860121|ref|ZP_08173247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
 gi|325482406|gb|EGC85413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
          Length = 865

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/740 (20%), Positives = 289/740 (39%), Gaps = 111/740 (15%)

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALK 331
             FD       L Y   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  
Sbjct: 7   YSFDEA-FQTALAY---FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARI 62

Query: 332 ETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGI 383
           E + +    A E ++LL  F ++    +       H Q   LS+CF+  +    D    I
Sbjct: 63  EHKYKNPLAAQEVFDLLDHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAI 122

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G 
Sbjct: 123 MRIDEEQVQLMKRRGGVGHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG- 181

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA+   +   H D E F+D +   G    +    N +  I D FM+    +  +    
Sbjct: 182 RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFVQQF 237

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +                             V + +SA  LW K++   +++  P + F
Sbjct: 238 PIDA------------------------RAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLF 273

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDY 618
            D     S       +    + T             C L S+NL ++  +       FD+
Sbjct: 274 WDTILRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVVDPFTDHAHFDF 333

Query: 619 DKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHR 654
           D  +   + A R++D+++D                           H  EK ++ +   R
Sbjct: 334 DLFSRHAQLAQRIMDDIVDLEMEKIDLIMEKIKHDPQSEEVKYAEYHLWEKIREKSGKGR 393

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             G+G+      +  + + Y + EA + +      ++ +A  ASV +AQERGA+  +   
Sbjct: 394 RTGVGITAEGDMIAAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGAFGIYDAK 453

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
             +   F    I  L E                +L + +K  G RN  C+ IAPT T + 
Sbjct: 454 REENNPF----INRLKEAD-------------AKLYEDMKKYGRRNIACLTIAPTGTTSL 496

Query: 775 ICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYHD- 828
           +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++    ++ ++ +  
Sbjct: 497 MTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHHKFLTWMEVNGI 556

Query: 829 -----GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                 +   I+ +        ATA ++D +  +      QKW+D + S+ + L     +
Sbjct: 557 DTRKRYTQEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDE 616

Query: 884 KL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV---DGKLNAVPVTDPNSS----T 935
           +L + +Y +AW  G K     R  S + V  S  K     +   +     D NS+    T
Sbjct: 617 ELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKPEKPADEEKAKDLNSAEEHHT 676

Query: 936 HSLGIPSSCTSDT---ECEV 952
           H +  P          +C+V
Sbjct: 677 HIMERPQVTEIRPKELDCDV 696


>gi|225734495|gb|ACO25263.1| ribonucleoside-diphosphate reductase [Epizootic haematopoietic
           necrosis virus]
          Length = 565

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/640 (27%), Positives = 261/640 (40%), Gaps = 118/640 (18%)

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA K +  K + A +  +      F  S+P    S T      SCFL  VPD + G+  
Sbjct: 31  ALAEKYSGGKPELAEKLRDYACKGWFGYSSPI-LTSVTGSGLPISCFLLYVPDTIEGLVD 89

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              E   L+   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+
Sbjct: 90  HTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRR 142

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P 
Sbjct: 143 GSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVERGENWDLVDPK 202

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +  H                            +SA  LW ++L   F TG P++ F D
Sbjct: 203 SGAVAH---------------------------TVSARELWERILETRFRTGEPYLNFID 235

Query: 566 PCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             N       +  G  +  SNLC EI L ++++ TAVC L S+NL       +++  +  
Sbjct: 236 AANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYNEWRET 289

Query: 623 STIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +   V +LDNVI               +A +S    R+IGLG MG+   L    IP+ 
Sbjct: 290 DLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKRRIPFD 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +       I   A+ A+  LA+ERG      G                      
Sbjct: 350 SEEAVRLTGIIFGGIKSAAVRATRALAKERGEAPDLTG---------------------- 387

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                G+RN++ +A+AP A  A + G S S++P     YV    
Sbjct: 388 --------------------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTR 427

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G    VN +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   
Sbjct: 428 VGSHQAVNPYLKRDLESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRV 487

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++  A+ RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR+ +  +  K 
Sbjct: 488 IVRQAAERQRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLRTCAGRTGHK- 546

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                       S  +  EC  CQ
Sbjct: 547 ----------------------IFEAKKSPENTEECTACQ 564


>gi|228861250|ref|YP_002854273.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
 gi|194307530|gb|ACF42260.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
          Length = 565

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 178/640 (27%), Positives = 261/640 (40%), Gaps = 118/640 (18%)

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA K +  K + A +  +      F  S+P    S T      SCFL  VPD + G+  
Sbjct: 31  TLAEKYSGGKPELAEKLRDYACKGWFGYSSPI-LTSVTGSGLPISCFLLYVPDTIEGLVD 89

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              E   L+   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+
Sbjct: 90  HTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRR 142

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P 
Sbjct: 143 GSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPK 202

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +  H                            +SA  LW ++L   F TG P++ F D
Sbjct: 203 SGAVAH---------------------------TVSARELWERILETRFRTGEPYLNFID 235

Query: 566 PCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             N       +  G  +  SNLC EI L ++++ TAVC L S+NL       ++D  +  
Sbjct: 236 AANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRET 289

Query: 623 STIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +   V +LDNVI               +A +S    R+IGLG MG+   L    IP+ 
Sbjct: 290 DLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFD 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +       I   A+ A+  LA+ERG      G                      
Sbjct: 350 SEEAVRLTGIIFRGIKSAAVRATRALAKERGEAPDLTG---------------------- 387

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                G+RN++ +A+AP A  A + G S S++P     YV    
Sbjct: 388 --------------------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTR 427

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G    VN +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   
Sbjct: 428 AGSHQAVNPYLKRDLESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRV 487

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++  A+ RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR+ +  +  K 
Sbjct: 488 IVRQAAERQRHLCQGQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLRTCAGRTGHK- 546

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                       S     EC  CQ
Sbjct: 547 ----------------------IFEAKKSPEKTEECTACQ 564


>gi|228473105|ref|ZP_04057862.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275687|gb|EEK14464.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 551

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/624 (27%), Positives = 267/624 (42%), Gaps = 114/624 (18%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A K   K +    F  +++      S+P  
Sbjct: 16  QILNRGYLLKG-----ESVEGAIERI-TSAAAKRLYKPELQPAFKEMITKGWISFSSPIW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 70  ANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRHRGSAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK----DTGYHIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ + +                                           
Sbjct: 185 LFFGVCVPDYWMQEMIEGDT---------------------------------------- 204

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
                 LW ++L    + G P+I F D  N + PQ +      +H+SNLC+EI L SS E
Sbjct: 205 --EKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHASNLCSEIMLPSSEE 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        FD  K    ++ A+  LD V+          + ++ A+  
Sbjct: 263 ESFICCLSSMNL------ELFDEWKDTKAVKLAIFFLDAVLSEFIEKTKGNYYLQSARNF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    + + I   A  A+ ELA   G   
Sbjct: 317 AIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFQHIQSEAEKATQELAHIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 377 LLKG------------------------------------------YGRRNATTMAIAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G VS  I+P   N Y      G+F   N +L   L+++ L +E +   ++  D
Sbjct: 395 TSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNEDIWRSIRLSD 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--KKLD 886
           GS+ +++ +  + K +  T  EI PM +I  A++RQ++IDQ+QSLNL +  P+   + ++
Sbjct: 455 GSVQHLQELTQEEKNVFKTFKEISPMEIITQAAQRQQYIDQSQSLNLNIP-PTMPIRDVN 513

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            +  +AW +G+K+ YY RS+S   
Sbjct: 514 KVLIEAWKLGVKSLYYQRSQSVAK 537


>gi|315606269|ref|ZP_07881285.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
 gi|315251960|gb|EFU31933.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
          Length = 855

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/728 (21%), Positives = 278/728 (38%), Gaps = 107/728 (14%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
              A  LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +  
Sbjct: 11  EAFAASLKY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEIARIERKYA 67

Query: 337 K--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
                 E + LL  F ++    +         Q   LS+CF+  +    D    I    +
Sbjct: 68  NPLSEEEIFGLLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  + D FM+    N  +    P    
Sbjct: 187 MLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDNRPYVQQFP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                     KV ++ISA ALW K++   +++  P + F D   
Sbjct: 239 --------------------VTGDAPKVKKEISAKALWEKIVHNAWKSAEPGVLFWDTIL 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLAS 623
             S       +    + T             C L SINL ++       +  F+ DK   
Sbjct: 279 RESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLISINLYSYVEHPFTPDAHFNMDKFKQ 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
             + A R++D+++D                           H  EK K  +   R  G+G
Sbjct: 339 HAQLAQRLMDDIVDLEMEKIELIMEKIKADPQSEEVKGAEYHLWEKIKHKSSLGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      L  + + Y + EA + + E  + ++ +A ++SV++A+ERGA+  F     +  
Sbjct: 399 ITAEGDMLAAMGLRYGTQEATDFSVEVHKALALNAYASSVQMAKERGAFEIFDAKREEHN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F +                        +L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PFILRLKDADP-----------------QLYDDMVKYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN----- 833
             I+P +  +Y  +  ++ + T V+   V+E+   D ++E ++   K+      N     
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVG--DSFEEYIVYHRKFLTWMQANGLDTE 559

Query: 834 -------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
                  I+ +        ATA ++D +  ++     QKW+D + S+ + L     + L 
Sbjct: 560 KRYTQEEIDALVSRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           + +Y +AW  G K     R  S + V  S  K    K  +V    P +       P    
Sbjct: 620 NRLYVEAWKSGCKGCTIYRDGSRSGVMISVSKKDKKKETSVA---PVAEAVPCKHPQVTE 676

Query: 946 SDTECEVC 953
              +   C
Sbjct: 677 VRPQTLEC 684


>gi|317503716|ref|ZP_07961733.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
 gi|315665237|gb|EFV04887.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
          Length = 861

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/733 (20%), Positives = 275/733 (37%), Gaps = 110/733 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEK- 335
                 LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A  +   E +  
Sbjct: 11  EAFQTSLKY---FDGDELAARVWVNKYAMKDSYGNIYERSPEDMHRRIAKEITRVEAKYK 67

Query: 336 -EKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQ 388
                 E + LL  F ++    S  T   +  +   LS+CF+  +    D    I    +
Sbjct: 68  NPMSEQEVFELLDHFRYIVPAGSPMTGIGNNQQVASLSNCFVIGLDGKADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  + D FM     +  +    P +  
Sbjct: 187 MLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDDFMNAAINDKTYVQQWPIDAE 242

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                   + KV ++I A  LW K++   +++  P + F D   
Sbjct: 243 ------------------------KPKVQKEIEARKLWEKIVHNAWKSAEPGVLFWDTII 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLAS 623
             S       +    + T             C L SINL ++         +FD++K   
Sbjct: 279 KESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTKEARFDFEKFKK 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            ++ A R++D+++D                           H  EK K+ +   R  G+G
Sbjct: 339 HVQFAQRIMDDIVDLEMEKINLIIEKIKQDPESNEVKDAEYHLWEKIKRKSGMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      L  L + Y + EA + +    + ++ +A  +SV +A+ERGA+  +        
Sbjct: 399 ITAEGDMLAALGLRYGTQEATDFSVLVHKTLALNAYRSSVTMAKERGAFEIYDAKRESNN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F +       E                 L   ++  G RN  C+ IAPT T + +   +
Sbjct: 459 PFVLRIKEADPE-----------------LYADMQQYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--------- 829
             I+P +  +Y  +  ++ +   V+   V+E+   D ++E ++   K+            
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG--DSFEEYIVYHRKFLKWMQVNGYDTE 559

Query: 830 ---SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL- 885
              S   I+ +        ATA ++D +  ++     QKW+D + S+ + L     + L 
Sbjct: 560 KRYSQEEIDNLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDETLV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK---LNAVPVTDPNSSTHSLGIPS 942
           + +Y +AW  G K     R  S   V  S  K    K        V +          P 
Sbjct: 620 NRLYVEAWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGTHAEGAEVREEEPKEKDCKQPE 679

Query: 943 SCTSDT---ECEV 952
                    EC+V
Sbjct: 680 VTEVRPKELECDV 692


>gi|312162815|ref|YP_003933800.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
 gi|308096448|gb|ADO13788.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
          Length = 1048

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/650 (26%), Positives = 272/650 (41%), Gaps = 61/650 (9%)

Query: 297  GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--------------RAVEF 342
                  + Y       R+E     + R+A  LA    E  +                  F
Sbjct: 407  SALKYEEFYLRPWGNGRLESVSQMYTRIAGALATGAREIPEIGTVALGRTGEWIDLFAYF 466

Query: 343  YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENAMLAKYSGGL 400
            ++ L S   + STP +   G R    SSC+L      D    I         +    GG+
Sbjct: 467  FDALVSHAIVPSTPAMLYLGGRQRYTSSCYLVNPQRTDSAGVIDAITHNVGDILARHGGI 526

Query: 401  GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
            G            I   NG S  V+P LK+ +    A N G  R   VC YLE WH DV 
Sbjct: 527  GLS----------IQSFNGGSS-VMPALKLLDSLVAAHNAGSHRPTGVCVYLEPWHTDVM 575

Query: 461  EFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDL 513
              L +R    G++ RR  ++ +A W+PDLF KR+       +   WTLF     S L   
Sbjct: 576  AVLRMRGLLAGEEARRCDNIFSAMWMPDLFFKRLIRYMEGERGVMWTLFDGAAGSALSAH 635

Query: 514  YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            +G EFE  YE  E            ++    L   ++     TG P++ FKD CN     
Sbjct: 636  HGAEFERLYEKMEEAGG----SALTRLPIQDLAFAIVRSAASTGSPFVMFKDACNRHYLY 691

Query: 574  QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
               G  +  SNLCTEI   + +  + VCNL S+NL     +  F +++L   +R  V ++
Sbjct: 692  DTQGSAISCSNLCTEIVHPADARSSGVCNLASVNLAECVEDGAFSFERLRRAVRACVLMV 751

Query: 633  DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + +ID      ++ ++ +   R++G+G+ G  +A   L +  +SPE  E+  E  E +  
Sbjct: 752  NVMIDTTRTPNQRCQRGHDRLRSMGIGMQGLHTACLRLGLDMSSPEFRELNAEIAEVMLL 811

Query: 693  HAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELK 750
             A+ AS +L       ++ FK S++ +G F  +            A  R      W  L+
Sbjct: 812  AAMQASNDLCVAGLPPFADFKRSVYSEGRFHWEG----------FAHARPKHSDEWARLR 861

Query: 751  KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +RV   G+RNS  +A+ PT + + +   S+   P + N++ K   +G+    N  L+  +
Sbjct: 862  QRVVRHGLRNSQFIALMPTVSSSQVSESSEGFAPVFTNMFSKVGRAGETLRPNLLLLEAV 921

Query: 811  KQR--DLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQKW 866
             +       E  +  L+     +        PD   +   TAFE D   LI+  + R  +
Sbjct: 922  HEAFGGAALERALDRLEDAQWCVARAFPCLAPDHPLRRFKTAFEYDQTLLIDLCADRAPY 981

Query: 867  IDQAQSLNLYLDEPSGKK-----LDFIYRQAWLMGLKT-TYYLRSRSATS 910
            +D +QS+ LY+ E S        L  +   A+  GLKT  YY + R AT+
Sbjct: 982  VDHSQSMTLYVTEASDGTLPASALTRLLVHAYKRGLKTGMYYCKVRKATN 1031


>gi|13242411|ref|NP_077434.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 9]
 gi|11036563|gb|AAG27192.1|AF275348_12 ribonucleotide reductase, large subunit [Cercopithecine herpesvirus
           9]
          Length = 783

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/672 (24%), Positives = 286/672 (42%), Gaps = 69/672 (10%)

Query: 292 AFEYLGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMG----------LAL------KE 332
               LGLQ      + Y   +  ++IE  + FF+R+A            +A         
Sbjct: 122 KLTSLGLQSALKYEEFYLTKLEDNKIESLEQFFIRLATAVTIEVMKIPNIAYLIPGTYSA 181

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQ-EN 390
                    F+N+LS    + +TP +   G      +SC++      ++     A+  + 
Sbjct: 182 YTWTDMCSVFFNMLSRQLIIPATPVMMFLGRETGATASCYIMDPKSTNVRDAIRAITGDV 241

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             + +  GG+G     +     +I   + +++G +  LK+ +   +A+N   +R   VC 
Sbjct: 242 GTVLQSRGGVGISLQSL-----NIVPNHTETKGALAILKLLDSMVMAINSDSERPTGVCV 296

Query: 451 YLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFS 503
           Y+E WH+D+   L  R     D+  R  ++    W+PDLF+KR  Q      N  WTLF 
Sbjct: 297 YVEPWHVDIRSILCTRGMLVRDEAYRCDNIFYCMWMPDLFLKRYIQYVQGTQNVTWTLFD 356

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            +  + L +LYG +F   Y   ERQ           I    L   ++     TG P++ F
Sbjct: 357 -NRANVLCNLYGDDFTAEYLKLERQGIG-----VTTIPIQELAFLIVKSSAVTGSPFVMF 410

Query: 564 KDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QF 616
           KD CN        G  +  SNLCTE+   ++     VCNL +IN+     N       +F
Sbjct: 411 KDACNRNYHMNVQGDAITGSNLCTEVIQKANPNMHGVCNLANINIANCILNGDEDGPPEF 470

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            +  L   +RTAV  L+ V+       +K+ +    +R++G+G+ G  +A   L +    
Sbjct: 471 SFADLTFAVRTAVVFLNGVLAAGNFPCKKSCEGVANNRSLGIGIQGLHTAFLRLGLDLTC 530

Query: 677 PEAVEIADESMEFISFHAISASVELAQER--GAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           P A  +  E  E + + A+  S+ + ++     +  F+ S +  G    D     +    
Sbjct: 531 PRARRLNVEITESMLYEAMFVSMNMCKQCGLQPFHEFENSKYASGWLHFDGFPTCS---- 586

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                    LPW+EL+  +   G+ NS  +A  PT   A +   S+   P + N++ K  
Sbjct: 587 ------YLNLPWEELRDDICQYGLYNSQFLAFMPTVASAQVTECSEGFSPVFTNMFSKVT 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEA---MISDLKYHDGSI-GNIERIPDDLKKI-HATAF 849
           +SG+    N  L++EL++    +E    +I  L+ +  S+      +          TAF
Sbjct: 641 ISGETLRPNLELMDELRKLYPHEEDRSRIIQQLEKNQWSVLRTFGCLNARHPLYKFKTAF 700

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYL 903
           E     L++    R  +IDQ+QS++L+++E      S   +  +  +A+  GLKT  YY 
Sbjct: 701 EYSQADLVDMCVDRAPFIDQSQSMSLFIEERPNGAVSAATIMNLLVRAYKGGLKTGMYYC 760

Query: 904 RSRSATSVEKST 915
           + R AT+    T
Sbjct: 761 KIRKATNSGLFT 772


>gi|281423575|ref|ZP_06254488.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
 gi|281402395|gb|EFB33226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
          Length = 861

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/723 (20%), Positives = 280/723 (38%), Gaps = 105/723 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +    +  F+  Y    LKY   F  + L  ++  ++Y +  + G   E  P+    R+A
Sbjct: 1   MESNKIYSFEEAY-QTSLKY---FDGDELAARVWVNKYAMKDSFGHIFECSPEDMHRRIA 56

Query: 326 MGLALKETEK--EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E +      A E + +L  F ++    +         Q   LS+CF+  +    
Sbjct: 57  NEVARIEAKYKNPMNAQEIFEMLDHFKYIVPAGSPMTGIGNSHQVASLSNCFVIGLEGKA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+    + 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDEFMQAAVDDR 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P +  +                         K+ ++ISA  LW K++   +++ 
Sbjct: 232 NYMQQWPIDAKE------------------------PKITKEISARKLWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----- 612
            P + F D     S       +  + + T             C L SINL ++       
Sbjct: 268 EPGVLFWDTILRESIPDCYADLGFTTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTT 327

Query: 613 NNQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              F++DK    ++ A R++D+++D                           H  EK K+
Sbjct: 328 EASFNFDKFKKHVQIAQRIMDDIVDLEMEKIDLIIHKIKEDPENDEVKEAEYHLWEKIKR 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  L + Y + EA + +    + ++ +A  +SV +A+ERGA+
Sbjct: 388 KSGMGRRTGVGITAEGDMLAALGLRYGTQEATDFSVSVHKTLALNAYRSSVTMARERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +         F    +  + E                EL   ++  G RN  C+ IAP
Sbjct: 448 EIYDAKREVNNPF----VQRIKEADP-------------ELFADMQQYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +   V+   V+E+   D ++E ++   K+ 
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG--DSFEEYIVYHRKFL 548

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                N            I+ +        ATA ++D +  ++     QKW+D + S+ +
Sbjct: 549 QWMQVNGYDTEKRYTQEEIDHLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTV 608

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S   V  S  K    K +    TD    
Sbjct: 609 NLPHDVDESLVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGSHTEGTDVRED 668

Query: 935 THS 937
           T  
Sbjct: 669 TPK 671


>gi|254482169|ref|ZP_05095410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
 gi|214037494|gb|EEB78160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
          Length = 707

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/708 (20%), Positives = 271/708 (38%), Gaps = 75/708 (10%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQA-FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHF 351
             L I   +Y L    G+ ++      + RVA  LA  E E  +++    F   L     
Sbjct: 23  ASLDIWDKKYRLKDAQGNAVDKDIDGTYARVARALAEVEDETVRQEWEQRFVWALKRGAI 82

Query: 352 MCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             +   + N+G +  +      +     ++ D + GI     E  +  K   G+G +++ 
Sbjct: 83  -PAGRIVSNAGAQEHKPSTSTINCTVSGSITDSMEGILQKNLEAGLTLKAGCGIGYEFST 141

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  +
Sbjct: 142 LRPRGAFVSGAGAYTSGPMSFMDIFDKMCFTVSSAGGRRGAQMATFDVHHPDVFDFVKAK 201

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--------LHDLYGKEF 518
           +  G    R    N +  I + F+  V ++  W L  P    +          ++  + F
Sbjct: 202 REDG----RLRQFNLSLLITEDFINAVKEDGEWPLSFPVTPKEFANLELDPEQEVVWRSF 257

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +       +  +   +V+++I A+ LW  +++  ++   P     D  N ++       
Sbjct: 258 PVTDGYVTNEQGQVACRVYQRIRAIKLWNAIMSSTYDYAEPGFILIDEVNKKNNNWFCEN 317

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLD 633
           V ++N C E  L         C LGS+NL             FD+++    +    R+LD
Sbjct: 318 VRATNPCGEQPLPPYGS----CLLGSVNLTRFVREPFTDKAHFDWEEYREVVAVFTRMLD 373

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV++IN   +E+ ++   + R  G+G +G  S L +L + Y   +++E  +E  + ++  
Sbjct: 374 NVVEINGLPLEQQRQEITSKRRHGMGFLGLGSTLTMLQMKYGEEDSLEFTEEVSKQMAVS 433

Query: 694 AISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSRLPW 746
                ++LA+E+GA           G           D I L  ++  ++  ++ S    
Sbjct: 434 GWKIGLDLAREKGAAPIMDEEFEVTGEMLRRRPEMAADGIKLGDKLPGKVLHSKYSHYMQ 493

Query: 747 D------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD 798
                  EL   +   G R ++  +IAPT TI+       S  I+PS+ + Y ++ +   
Sbjct: 494 ALALEEPELVNSIIQEGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIREG 553

Query: 799 FT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD----LKKIHATAFEI 851
                 V+ F    L  R+L +              G+   + DD    L      +  +
Sbjct: 554 KKSKEKVDVFSFELLAYRELVN--------------GDAMPLTDDESKKLPDYFIASDNV 599

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P   ++  S  QKW+D + S  + +      +     Y  A   GLK     R     S
Sbjct: 600 TPRQHVDVQSAAQKWVDSSISKTINVPTDCPYEDFKDTYLYAAEQGLKGCTTFRFIPEAS 659

Query: 911 V------EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
                  E      +   L   P  + + +T  L +   CT    C +
Sbjct: 660 QGVLMKEEDWRTLTISSPLRMAPRLN-SRATKKLSMTGRCTPQPTCSM 706


>gi|304310470|ref|YP_003810068.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
 gi|301796203|emb|CBL44409.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
          Length = 704

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/660 (20%), Positives = 259/660 (39%), Gaps = 61/660 (9%)

Query: 293 FEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
           F+    +I   +Y L  +      +     + R+A  L   E  K+K+   F N   +  
Sbjct: 5   FQPASEEIWAQKYRLQTSDGEAVDQTMDDTWRRIARALCEVEKGKKKQEEWFENFFWALK 64

Query: 351 F--MCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
              + +   + N+G +        ++     T+ D +  I     E  +  K   G+G +
Sbjct: 65  NGAIPAGRIISNAGAQAYKSDTSTINCTVSGTIHDTMNDILAKNFEAGLTLKAGCGIGYE 124

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA++ G   K+ G + F+ + + T   V+  G R+GA  A  +  H DV +F+
Sbjct: 125 FSTLRPRGAYVSGAGAKTSGPLSFMDIFDRTCFTVSSAGGRRGAQMATFDVSHPDVLDFI 184

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------DLHDL 513
            +++  G    R    N +  + + F+  V  +  W L  P + +          D   +
Sbjct: 185 RVKRENG----RLRQFNLSLLVSEKFIDAVRNDQQWALVFPIKTNSPDAQKLNLQDPEQV 240

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+                +V+RK++A  +W  +++  ++   P     D  N  +  
Sbjct: 241 EWREWPSNDGYITNDCGEVACRVYRKVAARKIWHVIMSSTYDFAEPGFILIDKVNQMNNN 300

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGSINL          + QFD++K    +   
Sbjct: 301 WFCENIRATNPCGEQPLPPYGS----CLLGSINLTRFISNPFSVDAQFDWEKFRRMVSVF 356

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV+++N   +          R  G+G +G  SA+ +L I Y S E+VE  ++   
Sbjct: 357 SRLLDNVVEVNGLPLNHQAHEIQYKRRHGMGFLGLGSAMTMLRIKYGSKESVEFTEQIAR 416

Query: 689 FISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G     +            +     D   +  +++ ++   + 
Sbjct: 417 EMAMTGWKTALELAKEKGPAPIMEDEFEVTPSMLSKRPEMVADGYRVGDKIKGKVLHAKY 476

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYVKS 793
           SR           L   +  +G R ++  +IAPT TI+   G   S  I+P++ + Y+++
Sbjct: 477 SRYMQRIAEQDPALVDELAKVGARYTHHSSIAPTGTISLSIGNNASNGIEPTFAHHYIRN 536

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         ++ F    L  R L +   +             E   + L     +  +
Sbjct: 537 VIKEGKKSKEKMDVFSFELLAYRALVNPKAMPF----------SENPAEKLPDYFTSTDD 586

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + P   ++  +  QKW+D + S  + +    S  +   IY  A+  GLK     R     
Sbjct: 587 VSPEQHVDIQAAAQKWVDSSISKTINVPTDISYDRFKDIYLYAYDSGLKGCTTFRFNPEA 646


>gi|257056733|ref|YP_003134565.1| vitamin B12-dependent ribonucleotide reductase [Saccharomonospora
           viridis DSM 43017]
 gi|256586605|gb|ACU97738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Saccharomonospora viridis DSM 43017]
          Length = 955

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 135/635 (21%), Positives = 238/635 (37%), Gaps = 36/635 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 116 GYFAGAADAEIFEHELTWMLLHQVFSFNSPVWFNVGTSSKQQVSACFILSVDDTMESILN 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGLIFKGGSGAGLNLSRIRSSR-ELLSSGGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H DVEEF++ +       R   D   A +  DL    ++    QNA  +
Sbjct: 235 RAAKMVVLDVDHPDVEEFIETKAREEHKIRALRD---AGFDMDLGGADISSVQYQNANNS 291

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  G +F +          R   ++  ++ A +L+RKM    +E   P 
Sbjct: 292 VRVSDEFMQAVET-GGDFGLR--------ARTTGEIIERVDARSLFRKMAQAAWECADPG 342

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
           I + D  N        G + +SN C+E     +S     CNL S+NLL     +  FD +
Sbjct: 343 IQYDDTINDWHTCPESGRITASNPCSEYMHLDNSS----CNLASLNLLKFLRDDGTFDAE 398

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +   +  +D  I       E   ++    R +G+G     + L      Y S   
Sbjct: 399 LFVKAVELVITAMDISICFADFPTEAIAETTRKFRQLGIGYANLGALLMATGHAYDSEGG 458

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      ++  +   S ELA   G Y  +  +                 VR    ++
Sbjct: 459 RALAAAITSLMTAVSYRRSAELAGIVGPYEGYARNAEAHQRVMRKHAAANELVRTYHVND 518

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
            A+   +   W+   +     G RNS    +APT TI  +    +  I+P +  +  K  
Sbjct: 519 AAIRAVATKEWNRGIELGMANGWRNSQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKL 578

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATA--- 848
           + G    + +  V    +   + E  I  +  +    G + N   +  +  ++   A   
Sbjct: 579 VGGGSMKIVNNAVPRALRSLGYQEEQIEAIVDYISEHGHVVNAPGLRPEHYEVFDCAVGE 638

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + + E  + + ++ IY Q W +GLK     R   
Sbjct: 639 RSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRDNC 698

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                 ST K    +  A P            +P 
Sbjct: 699 KVGQPLSTAKKEKSESRAEPEKVVEYRPVRKRLPK 733


>gi|9629746|ref|NP_045238.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 4]
 gi|2605964|gb|AAC59536.1| 21 [Equid herpesvirus 4]
          Length = 789

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/686 (25%), Positives = 288/686 (41%), Gaps = 67/686 (9%)

Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             +DF    L +    E RD  +          + Y   + G R+E    FF+R+A    
Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167

Query: 330 LKETEKEKRAV--------------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
               E+   A                F+  L+    + +TP +   G     ++SC+L  
Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D    I   ++E   +    GG+G               T G S+GV+  LK+ + 
Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNTP-----PTEGCSRGVMALLKLLDS 282

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR 492
             +A+N  G+R   VC Y E WH D+   L++R     D+  R  ++    W PDLF  R
Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342

Query: 493 VTQNAG------WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             +         WTLF  D  S L  +YG +F   YE  ER     +      I    + 
Sbjct: 343 YQRYVDGESGIMWTLFD-DTASHLCHMYGNDFTREYERLERCGFGIDA-----IPIQDMA 396

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGS 604
             ++     TG P++ FKD CN          G +  SNLCTEI  ++   +  VCNL S
Sbjct: 397 FIIVRSAVMTGSPFLMFKDACNRHYHFDMRKRGAIMGSNLCTEIIQHADETQNGVCNLAS 456

Query: 605 INLLAHFANNQ--------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           INL    A           FD+  L     TA   ++ ++  + +   K++K    +R++
Sbjct: 457 INLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSL 516

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG+ G  +   +L +  ASPEA ++  +  E +  +++ AS  L +     +  F+ S 
Sbjct: 517 GLGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSK 576

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +G  P D+            +  T+R  W  L+  +K  G+ NS  +A  PT + + +
Sbjct: 577 YSRGELPFDAYPN---------VTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQV 627

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              S+   P Y NL+ K   +G+    N  L+  ++     + A +  L   + +  ++ 
Sbjct: 628 TESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVV 687

Query: 836 RIPDDLK-----KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL----- 885
               DL          TAFE D   LI   + R  ++DQ+QS++L++ EP+  KL     
Sbjct: 688 GAFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRI 747

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATS 910
             +   A+  GLKT  YY + + AT+
Sbjct: 748 MNLLVHAYKRGLKTGMYYCKIKKATN 773


>gi|1710389|sp|P50642|RIR1_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|515832|emb|CAA53100.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 789

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 176/686 (25%), Positives = 288/686 (41%), Gaps = 67/686 (9%)

Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             +DF    L +    E RD  +          + Y   + G R+E    FF+R+A    
Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167

Query: 330 LKETEKEKRAV--------------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
               E+   A                F+  L+    + +TP +   G     ++SC+L  
Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D    I   ++E   +    GG+G               T G S+GV+  LK+ + 
Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNTP-----PTEGCSRGVMALLKLLDS 282

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKR 492
             +A+N  G+R   VC Y E WH D+   L++R     D+  R  ++    W PDLF  R
Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342

Query: 493 VTQNAG------WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             +         WTLF  D  S L  +YG +F   YE  ER     +      I    + 
Sbjct: 343 YQRYVDGESGIMWTLFD-DTASHLCHMYGNDFTREYERLERCGFGIDA-----IPIQDMA 396

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGS 604
             ++     TG P++ FKD CN          G +  SNLCTEI  ++   +  VCNL S
Sbjct: 397 FIIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLAS 456

Query: 605 INLLAHFANNQ--------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           INL    A           FD+  L     TA   ++ ++  + +   K++K    +R++
Sbjct: 457 INLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSL 516

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG+ G  +   +L +  ASPEA ++  +  E +  +++ AS  L +     +  F+ S 
Sbjct: 517 GLGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSK 576

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +G  P D+            +  T+R  W  L+  +K  G+ NS  +A  PT + + +
Sbjct: 577 YSRGELPFDAYPN---------VTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQV 627

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              S+   P Y NL+ K   +G+    N  L+  ++     + A +  L   + +  ++ 
Sbjct: 628 TESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVV 687

Query: 836 RIPDDLK-----KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL----- 885
               DL          TAFE D   LI   + R  ++DQ+QS++L++ EP+  KL     
Sbjct: 688 GAFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRI 747

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATS 910
             +   A+  GLKT  YY + + AT+
Sbjct: 748 MNLLVHAYKRGLKTGMYYCKIKKATN 773


>gi|332882773|ref|ZP_08450384.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679275|gb|EGJ52261.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 551

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/623 (27%), Positives = 261/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +   K +    F  +++      S+P  
Sbjct: 16  QILNRGYLLKG-----ESVEGAIDRI-THAAARRLYKPELQPAFKEMITKGWISFSSPIW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 70  ANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRSRGSAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK----DVEFPIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 185 LFFGICVPDYWMQEMIDGD----------------------------------------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
            +    LW ++L    + G P+I F D  N   PQ +      + SSNLC+EI L SS E
Sbjct: 204 -MEKRRLWARVLESRQQKGLPYIMFTDNANRNRPQVYKDKDMLIRSSNLCSEIMLPSSEE 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        FD  K    ++ AV  LD V+          + ++ A+K 
Sbjct: 263 ESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLSEFIEKTKGNYYLQAARKF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    +   I   A  A+ ELA   G   
Sbjct: 317 AMRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARTFRHIREEADKATKELAHIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 377 LLKG------------------------------------------YGRRNTTTMAIAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G VS  I+P   N Y      G+F   N +L   L+++ L +E +   ++ ++
Sbjct: 395 TSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNEDVWRSIRLNN 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
           GS+ +++ +    K +  T  EI PM ++  A++RQ +IDQ QSLNL +      K ++ 
Sbjct: 455 GSVQHLQELTQLEKNVFKTFKEISPMEIVSQAAQRQAYIDQGQSLNLNIPSVMPIKDVNK 514

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+K+ YY RS+S   
Sbjct: 515 VMIEAWKLGVKSLYYQRSQSVAK 537


>gi|325171198|ref|YP_004251299.1| ribonucleoside triphosphate reductase alpha chain [Vibrio phage
           ICP1]
          Length = 748

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/809 (19%), Positives = 307/809 (37%), Gaps = 93/809 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L  V    ++    K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNL-GVGWSSLVLNAIKKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P             +++   +  G+  
Sbjct: 64  AEKADK--AHLAMAARLFLGTMYKNAHGGFEERPHLY----------DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISL-NCRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +++  Y + ++   +        G+   ++ I AV + +  L    +TG  + T+ 
Sbjct: 347 LHAPEVYKAYHENYDSLKQTLNDYILSGKP--YKTIKAVEVLKLYLKQRQDTGRMYSTWL 404

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------SEETAVCNLGSINLL 608
           D  N          ++SSNLC EI L +                   E A+C L  I   
Sbjct: 405 DEANYH--TPFKEPIYSSNLCVEIFLPTKGFKDTGEMYTNDVENVQGEIALCFLSCI--- 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +   ++        +  +DNVI +  +       S    R++G+G+     AL 
Sbjct: 460 ---VAGRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALA 516

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y + E         E  S++   AS+ LA+E+G       + + +G  PID+   
Sbjct: 517 SKGLSYKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNK 576

Query: 729 LAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                 +    +  R  W+ L+K  +   G+RNS   A  P  + + +   + S+ P  Q
Sbjct: 577 NV----DRVHTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQ 632

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           +  +K + +         +                                ++LK  +  
Sbjct: 633 DYVIKKSGTTKVVFAAPDI--------------------------------ENLKGKYEY 660

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKT 899
           A+EI    +I+  +  QK+  Q  S +L+ D         P  + L+  Y  A  MG+K+
Sbjct: 661 AYEIPTKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFY-YATKMGMKS 719

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            YY  S+S    E ST++  +    +  +
Sbjct: 720 WYYQNSKSGIKQEGSTIEPDESSCESCKM 748


>gi|218264324|ref|ZP_03478181.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222092|gb|EEC94742.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
          Length = 856

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 278/710 (39%), Gaps = 105/710 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVA 325
           +++     FD  + A+ L Y   F  + L  ++  ++Y L    G+  E  P     R+A
Sbjct: 9   IVNRKTYTFDEAFKAS-LDY---FTGDELAAKVWVNKYALKDAFGNIYEESPVDMHHRLA 64

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP--- 377
             +A  E +        E +NL   F ++    S  T   +  +   LS+CF+  +    
Sbjct: 65  SEIARVEKKYPNPLSEEELFNLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDA 124

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   
Sbjct: 125 DSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 184

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V    
Sbjct: 185 VAQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVVNGT 239

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P + S+  ++                        ++I+A  LW+K++   +++ 
Sbjct: 240 PYKQQYPIDSSEPTNV------------------------KEINAAELWKKIIHNAWKSA 275

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
            P + F D     S       +    + T             C L +INL ++  N    
Sbjct: 276 EPGVLFWDTILKESVPDSYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTK 335

Query: 614 -NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              FD+D     +  A R++D++ID                           H  EK +K
Sbjct: 336 EAYFDFDLFRKHVILAQRIMDDIIDLESEKIEKILEKIDTDPESLEVKQSERHLWEKIQK 395

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R  G+G+      +  L + Y + EA   A++  + ++  A  +SVE+A+ERGA+
Sbjct: 396 KTLQGRRTGVGITAEGDMIAALGLRYGTEEATVFAEKVQKMLALAAYRSSVEMAKERGAF 455

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +     ++  F    I  L E                EL   +   G RN  C+ IAP
Sbjct: 456 DIYDAKREEKNPF----INRLREADP-------------ELYDDMVKYGRRNIACLTIAP 498

Query: 769 TATIANICGVSQSIDPSYQNLY-VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +        V+E    D ++E ++   K+ 
Sbjct: 499 TGTTSLMTQTTSGIEPVFLPVYRRRRKVNPNDAEARVDFVDETG--DAFEEYIVFHHKFV 556

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
              + N            +E +        AT+ ++D +  +    R QKW+D + S+ +
Sbjct: 557 TWMLANGFSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTI 616

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            L     + L + +Y +AW  G K     R  S + V  ST      K +
Sbjct: 617 NLPADVTEDLVNSLYVEAWRCGCKGCTVYRDGSRSGVLLSTDNKKKKKED 666


>gi|90416806|ref|ZP_01224736.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
 gi|90331559|gb|EAS46795.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
          Length = 720

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/658 (21%), Positives = 257/658 (39%), Gaps = 60/658 (9%)

Query: 293 FEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSS 348
           F+   L I   +Y L    N        A + RVA  L+  E E  +E+    F   L  
Sbjct: 24  FQEASLDIWDKKYRLKDKENNPVDADLDATYARVAKALSDVEDESLREEWQTRFVWALKH 83

Query: 349 FHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +   + N+G +        ++      VPD + GI     E  +  K   G+G +
Sbjct: 84  GAI-PAGRIISNAGAQAYKPATSTINCTVSGIVPDSMVGILERNLEAGLTLKAGCGIGYE 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+
Sbjct: 143 FSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVSHPDVFDFV 202

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--------DLYG 515
             ++  G    R    N +  I + F++ V  +  W L  P    ++         ++  
Sbjct: 203 RAKREDG----RLRQFNLSLLITEEFIEAVRNDGSWDLTFPISAKEIDAGLDLKGDNIVW 258

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           K F      Y         +++  I A  LW  +++  ++   P     D  N  +    
Sbjct: 259 KPFPTTENYYCNDDGLVACRIYETIRAQKLWNAIMSSTYDYAEPGFILIDQVNKNNNNWF 318

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
              + ++N C E  L         C LGS+NL          +  FD+++ A  +    R
Sbjct: 319 CEDIRATNPCGEQPLPPYGS----CLLGSVNLTKFVRNPFTKDAYFDWEEYAEVVAVFTR 374

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV++IN   ++  +K     R  G+G +G  S + +L + Y    ++E  D     +
Sbjct: 375 MLDNVVEINGLPLDNQRKEIEYKRRHGMGFLGLGSTITMLQMKYGDEGSLEFTDRIARDM 434

Query: 691 SFHAISASVELAQERGAYS----SFKGS---LWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           +   + A +ELA+E+G        F+ +   L+ +     D I     ++ ++ + + S+
Sbjct: 435 AVAGLKAGLELAREKGPAPIMEDDFEVTAALLFKRPELAKDGIKAGDSLKGKVLLGKYSK 494

Query: 744 LPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
                     EL + +   G R S+  +IAPT TI+      VS  I+PS+ + Y ++ +
Sbjct: 495 YMQTIATVAPELIESIIEEGCRFSHHSSIAPTGTISLSLANNVSNGIEPSFAHHYARNVI 554

Query: 796 ---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V+ F    L  R L ++  +      D          + L     ++  I 
Sbjct: 555 REGKKSKEKVDVFSYELLAYRTLINDKAMPYATNED----------EALPDYFMSSENIM 604

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           P   ++  +  QKW+D + S  + +      +    IY  A   GLK     R     
Sbjct: 605 PRAHVDIQAAAQKWVDSSISKTINVPTDCDYEDFKDIYLYAAEKGLKGCTTFRFNPEA 662


>gi|38638229|ref|NP_944412.1| ribonucleotide reductase subunit 1 [Psittacid herpesvirus 1]
 gi|81987372|sp|Q6UDJ2|RIR1_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|34500235|gb|AAQ73718.1| ICP6 [Psittacid herpesvirus 1]
          Length = 811

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/702 (23%), Positives = 263/702 (37%), Gaps = 90/702 (12%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA----------------- 339
             +     Y   +   R+E    FF+R+A   A      +  A                 
Sbjct: 156 SARKFESMYLGKLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFRDGTRAPDANTVF 215

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD--DLYGIFGALQENAMLAKYS 397
             F+  L     +  TP +  +GT     +SCFL  V        +    +E   +    
Sbjct: 216 CLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSIAEEIIPVMHSH 275

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G                +  S G++  LK  +    A N    R   +C Y+E WH 
Sbjct: 276 GGIGLYM-------DCDSNWDDNSSGMMLALKALDSIIAASNAVSARPSGLCVYVEPWHR 328

Query: 458 DVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           D+ + L  R    G++  R  +   A W+PDLFMKR   N  WTLF     + L DLYG+
Sbjct: 329 DIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLFDGR-AAHLSDLYGE 387

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE  ER+             A  +   ++     TG P++ FK   N        
Sbjct: 388 EFEKEYELLERKNVG-----IATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFDMA 442

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----------NQFDYDKLASTI 625
           G  +  SNLCTEI   +  E   VCNL S+NL A                FDY       
Sbjct: 443 GRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTPPIGTFDYSSFRDAC 502

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A   ++ ++ ++   I++A   N   R+IG+G+ GF +A  L      S EA     +
Sbjct: 503 AVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQGFGLDSVEACRFNGK 562

Query: 686 SMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             E ++      S  + +     +  F  S + +G   +D         D          
Sbjct: 563 LFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPARHLYFDG--------- 613

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L++ +K  G+ N   +A+ PTA+ + +  VS+ I P + N++ K   +G+   +N 
Sbjct: 614 -WDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLNV 672

Query: 805 FLVNELKQR---DLWDEAMISDLKYHDGSIGN--IERIPDDLK-KIHATAFEIDPMWLIE 858
            L+  ++           ++  L  +  S        +P         TAFE D   L+ 
Sbjct: 673 ALMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEADQEHLLR 732

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGK-----KLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
            ++ R  ++D +QS  LY+ E         ++  +   A+  GLKT  YY + R AT   
Sbjct: 733 LSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATD-- 790

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                +   LG  +    D  C  CQ
Sbjct: 791 ---------------------NGVFLGTDTCRRDDPTCLACQ 811


>gi|149375056|ref|ZP_01892829.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360945|gb|EDM49396.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 699

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/659 (21%), Positives = 259/659 (39%), Gaps = 62/659 (9%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
           +   L I   +Y L    G  ++   +A + RVA  LA  E +  + K   EF   L   
Sbjct: 2   QEASLDIWNSKYQLKTKTGEPVDKDIEATYERVATALAEVENKANRAKHKKEFVWALRHG 61

Query: 350 HFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               +     N+G          ++     +V D +  I     E  +  K   G+G ++
Sbjct: 62  AI-PAGRITSNAGAEAHKPATSTINCTVSGSVQDSMNDILEKNHEAGLTLKAGCGIGYEF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+ 
Sbjct: 121 STLRPRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVHHPDVIDFIQ 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHD---LY 514
            ++  G    R    N +  I + F++ V     W L  P       DE  DL D     
Sbjct: 181 AKREDG----RLRQFNLSLLITEDFIEAVRNGDDWHLSFPVTEKEVEDEGLDLSDTTQFV 236

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            ++F I          +   +++R + A  +W  ++T  ++   P     D  N  +   
Sbjct: 237 YRDFPIQKGYVVNGEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNW 296

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL             F+Y+K    +    
Sbjct: 297 FCEDIRATNPCGEQPLPPYGS----CLLGSVNLTMFVDYPFTDKASFNYEKYRKVVGIFT 352

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   +E+ +      R  G+G++G  S L +L +PY S E+V+  +E +  
Sbjct: 353 RMLDNVVEINGLPLEEQRHEITYKRRHGMGILGLGSTLAMLRMPYGSSESVQFTEEVVRE 412

Query: 690 ISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++      S+ LA+E+G        F+     L        D   L  +++ ++   + S
Sbjct: 413 MAVEGWRQSLALAEEKGPAPIMDDEFEVTPKMLTKCPQLSQDGYKLGDKLKGKVLHAKYS 472

Query: 743 RLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           +          EL +++   G R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 473 KYMQQIAGVEPELIEQLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNI 532

Query: 795 MSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ F    L  R L           + G++   E     L +   T+ ++
Sbjct: 533 IREGRKTKEKVDVFSFELLAYRHL----------VNPGAMPFSEEEDKRLPQYFTTSEDV 582

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSAT 909
            P   ++  +  Q W+D + S    + +         IY  A+  GLK     R     
Sbjct: 583 TPAQHVDIQAAAQLWVDSSISKTANVPQDFAYPDFKDIYMYAYDKGLKGCTTFRFNPEA 641


>gi|114797863|ref|YP_760266.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
 gi|114738037|gb|ABI76162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
          Length = 731

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/666 (22%), Positives = 269/666 (40%), Gaps = 93/666 (13%)

Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
           L  +I   +Y F    G  +++  A   RVA  +A  E    ++     F + L+ F F+
Sbjct: 7   LAAEIWEKKYRFRSDEGEDVDLA-ATLSRVANAVAKAENPANRKVWRARFRDALTDFRFI 65

Query: 353 CSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   L  +GT     L +CF + T+PD+L GIF  L+E A+  +  GG+G D++ +R  
Sbjct: 66  PAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRPS 125

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G   ++ G + F+   +     +   G+R+GA+   L   H D+E F+D ++   
Sbjct: 126 GAPVMGVGAQASGPLSFMDTWDAMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 182

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  R  + N +  + D FM  +     WTL                             
Sbjct: 183 -DGARFRNFNLSVLVTDEFMAALEAGRDWTLSF--------------------------- 214

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               + +R + A  LW +++   ++   P + F D  N  +    +  + +SN C E  L
Sbjct: 215 --NGQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQML 272

Query: 591 NSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                    C LGSINL         A+ + +  +L +   TA+R LDNVIDI+ + +E+
Sbjct: 273 PP----YGACLLGSINLARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLEQ 328

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +     R +GLG+ G   AL      Y S +AV +++  M  I   A  AS  LA E+
Sbjct: 329 QGEEARAKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAEK 388

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  F  ++ D+       +GL  +                  +  +   G+RN    +
Sbjct: 389 GPYPLFDKAILDRPNL----LGLDPDT-----------------RALISEHGLRNGCLTS 427

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T + +    S  ++P +   Y +     D T V   + +   +  +W        
Sbjct: 428 IAPTGTTSLLADNVSSGVEPVFAFSYSRKVRQADGTSVEEPVTDYALR--VWHRL----- 480

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
                   + +  P     +  +A  + P   +   +  Q+++D + S  +      S  
Sbjct: 481 --------HGDAAPP--ADVFVSAQTLTPQDHLRMQASAQRFVDSSISKTVNCPADISFD 530

Query: 884 KLDFIYRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVTDP-NSSTHSL 938
               +YR+ + +G K     R    + S  SV ++ ++    +    P       +T+ L
Sbjct: 531 AFKDVYREGYRLGCKGLTTYRPNAITGSVLSVAETPVQADVPETPLAPRARKLEGATYKL 590

Query: 939 GIPSSC 944
             P S 
Sbjct: 591 KWPQSA 596


>gi|146280505|ref|YP_001170658.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
 gi|145568710|gb|ABP77816.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
          Length = 745

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/661 (22%), Positives = 266/661 (40%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
            A +     I   +Y L   +G+ I+      + RVA  LA  E   ++E     F   L
Sbjct: 47  IALQAASEDIWSQKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWAL 106

Query: 347 SSFHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G +        ++     ++ D +  I G + E  +  K   G+G
Sbjct: 107 RNGAI-PAGRIISNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIG 165

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  G+ + G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 166 YEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVRE 225

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY------- 514
           F+  ++  G    R    N +  I D FM+ V  +  W L  P    +  +L        
Sbjct: 226 FIRAKREDG----RLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQV 281

Query: 515 -GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ +      R       K++ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 282 IWREWPVHDGYIVRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNN 341

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
                + ++N C E  L         C LGSINL     +      +FD+DK    +R  
Sbjct: 342 WWCEAIRATNPCGEQPLPPYGS----CLLGSINLTHFVIDPFGVEARFDWDKYREVVRVF 397

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ +    + R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 398 TRMLDNVVEINGLPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSR 457

Query: 689 FISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++EL++E+G       +F+     L  +     D   +  ++   +   + 
Sbjct: 458 EMALVGWEQALELSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKY 517

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          +L + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 518 SRYMQKIAEYAPDLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 577

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         +  F    L  R L       + +   GS    E++PD       TA +
Sbjct: 578 LIRPGRKAKEKIEVFSYELLAYRTLI------NARAKPGSDEPGEKLPD----YFITADD 627

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R   A
Sbjct: 628 VSPTQHVDIQAAAQKWVDSSISKTANVPTDYP-FEAFKDIYRYAWRQGLKGCTTFRFNPA 686

Query: 909 T 909
            
Sbjct: 687 A 687


>gi|327478741|gb|AEA82051.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri DSM
           4166]
          Length = 716

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/661 (22%), Positives = 266/661 (40%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
            A +     I   +Y L   +G+ I+      + RVA  LA  E   ++E     F   L
Sbjct: 18  IALQAASEDIWSQKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWAL 77

Query: 347 SSFHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G +        ++     ++ D +  I G + E  +  K   G+G
Sbjct: 78  RNGAI-PAGRIISNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIG 136

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  G+ + G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 137 YEFSTLRPRGSFVSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVRE 196

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY------- 514
           F+  ++  G    R    N +  I D FM+ V  +  W L  P    +  +L        
Sbjct: 197 FIRAKREDG----RLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQV 252

Query: 515 -GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ +      R       K++ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 253 IWREWPVHDGYIVRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNN 312

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
                + ++N C E  L         C LGSINL     +      +FD+DK    +R  
Sbjct: 313 WWCEAIRATNPCGEQPLPPYGS----CLLGSINLTHFVIDPFGVEARFDWDKYREVVRVF 368

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ +    + R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 369 TRMLDNVVEINGLPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSR 428

Query: 689 FISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++EL++E+G       +F+     L  +     D   +  ++   +   + 
Sbjct: 429 EMALVGWEQALELSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKY 488

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          +L + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 489 SRYMQKIAEYAPDLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 548

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         +  F    L  R L       + +   GS    E++PD       TA +
Sbjct: 549 LIRPGRKAKEKIEVFSYELLAYRTLI------NARAKPGSDEPGEKLPD----YFITADD 598

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R   A
Sbjct: 599 VSPTQHVDIQAAAQKWVDSSISKTANVPTDYP-FEAFKDIYRYAWRQGLKGCTTFRFNPA 657

Query: 909 T 909
            
Sbjct: 658 A 658


>gi|15642893|ref|NP_227934.1| ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|4980610|gb|AAD35212.1|AE001698_1 ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|2440216|emb|CAA73377.1| ribonucleotide reductase [Thermotoga maritima MSB8]
          Length = 827

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/673 (26%), Positives = 297/673 (44%), Gaps = 94/673 (13%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMR------VAMGL--ALKETEKEKRAVEF----YNL 345
           IL DRYF+   +G+ +E   +    R       A  L  + K+ EK  R  E+    + +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G                                LS+CF+  V D
Sbjct: 82  LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K    +    +  N +   P            
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAV-LNFFNLSVGFP------------ 248

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                  E+  L++          E+ E +       + +K+    L+RK+ T  +++G 
Sbjct: 249 ---MDKKEILKLYE----------EDGELELSHPRSTIRKKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F    N   P      ++S+N C EI       +   CNLGSI++   + N   D 
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYNNGFVDL 351

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S E
Sbjct: 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQE 411

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734
           A + A   M FI+ HA   S EL +E+G +   + S +        F +       E+R+
Sbjct: 412 ARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIRE 471

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + M +  R               RN   + IAPT +I+NI   S  ++P++   Y +  
Sbjct: 472 VMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFV 516

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAFEID 852
              D T      VN++ +  L  E +    K     GS+ +I  +P+ +KK+   A +ID
Sbjct: 517 TKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDID 576

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TS 910
           PM  +      Q+++D   S  + + +  +   +  +Y +A    ++     R  S  T 
Sbjct: 577 PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQ 636

Query: 911 VEKSTLKGVDGKL 923
           V    LK  +   
Sbjct: 637 VLTKALKTPEAPK 649


>gi|299141379|ref|ZP_07034516.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
 gi|298577339|gb|EFI49208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
          Length = 861

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/723 (20%), Positives = 280/723 (38%), Gaps = 105/723 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +    +  F+  Y    LKY   F  + L  ++  ++Y +  + G   E  P+    R+A
Sbjct: 1   MESNKIYSFEEAY-QTSLKY---FDGDELAARVWVNKYAMKDSFGHIFECSPEDMHRRIA 56

Query: 326 MGLALKETEK--EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E +      A E + +L  F ++    +         Q   LS+CF+  +    
Sbjct: 57  NEVARIEAKYKNPMNAQEIFEMLDHFKYIVPAGSPMTGIGNSHQVASLSNCFVIGLEGKA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTRE 176

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+    + 
Sbjct: 177 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLDDEFMQAAVDDR 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P +  +                         K+ ++ISA  LW K++   +++ 
Sbjct: 232 NYMQQWPIDAKE------------------------PKMTKEISARKLWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----- 612
            P + F D     S       +  + + T             C L SINL ++       
Sbjct: 268 EPGVLFWDTILRESIPDCYADLGFTTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTT 327

Query: 613 NNQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKK 648
              F++DK    ++ A R++D+++D                        +  H  EK K+
Sbjct: 328 EASFNFDKFKKHVQIAQRIMDDIVDLEMEKIDLIIHKIKEDPENDEVKEVEYHLWEKIKR 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  L + Y + EA + +    + ++ +A  +SV +A+ERGA+
Sbjct: 388 KSGMGRRTGVGITAEGDMLAALGLRYGTQEATDFSVSVHKTLALNAYRSSVTMARERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +         F    +  + E                EL   ++  G RN  C+ IAP
Sbjct: 448 EIYDAKREVNNPF----VQRIKEADP-------------ELFADMQQYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T + +   +  I+P +  +Y  +  ++ +   V+   V+E+   D ++E ++   K+ 
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDADVHVDFVDEVG--DSFEEYIVYHRKFL 548

Query: 828 DGSIGN------------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                N            I+ +        ATA ++D +  ++     QKW+D + S+ +
Sbjct: 549 QWMQVNGYDTEKRYTQEEIDHLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTV 608

Query: 876 YLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L     + L + +Y +AW  G K     R  S   V  S  K    K +     D    
Sbjct: 609 NLPHDVDESLVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGSHTEGADVRED 668

Query: 935 THS 937
           T  
Sbjct: 669 TPK 671


>gi|72162548|ref|YP_290205.1| vitamin B12-dependent ribonucleotide reductase [Thermobifida fusca
           YX]
 gi|71916280|gb|AAZ56182.1| ribonucleotide reductase large subunit [Thermobifida fusca YX]
          Length = 934

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 248/653 (37%), Gaps = 53/653 (8%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQ------AFFMRV-----AMG----LALKETEKEKRAV 340
              QI+  +YF       +  PQ          RV     A G        + + E    
Sbjct: 70  NATQIVASKYFR----GALGTPQREWSLKQLIDRVVDTYTAAGREHGYFASDEDAEIFDH 125

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G
Sbjct: 126 ELKYALVHQMFSFNSPVWFNVGTSSKAQVSACFILSVDDTMESILDWYKEEGLIFKGGSG 185

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D
Sbjct: 186 AGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPD 244

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEF++ +     + R+   +  A +  DL    +         +   VSD       +F
Sbjct: 245 IEEFIECKAR---EERKIRVLRDAGFDVDLGGADIISVQYQNANNSVRVSD-------KF 294

Query: 519 EIAYENYER--QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             A EN E      R   +V  K+ A  L+RKM    +E   P I + D  N        
Sbjct: 295 MRAVENDEDFDLIARTTGEVISKVRARDLFRKMAQAAWECADPGIQYDDTINDWHTTPES 354

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
           G + +SN C+E     +S     CNL SINL+     +  F  ++        +  +D  
Sbjct: 355 GRITASNPCSEYVHLDNSS----CNLASINLMKFLDEDGSFRVEEFERLTELVITAMDIS 410

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I       EK  ++   +R +G+G     + L      Y S     +A      ++  A 
Sbjct: 411 ICFADFPTEKIAETTRAYRQLGIGYTNLGALLMATGHAYDSDGGRSVAAAITSLMTAAAY 470

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKK 751
             S ELA   GAY  +  +                 +R     E  ++  +   W E  +
Sbjct: 471 RRSAELAGVVGAYEGYAKNAEAHKRVMRKHAAANDALRPVGQLEKPIHDAATRAWKECLE 530

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +  G RN+    +APT TI+ +    +  I+P +  + +K  + G    + +  +   
Sbjct: 531 LGERHGWRNAQASLLAPTGTISFMLDCDTTGIEPDFSLVKIKKLVGGGSMKIVNQGIPRA 590

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRR 863
            +   ++E  I  +  +    G++   P +L+  H   F+       I PM  +E  +  
Sbjct: 591 LRTLGYNEDQIQAIVDYVAEHGHVVDAP-ELRPEHYEVFDCATGKRYIRPMGHVEMMAAV 649

Query: 864 QKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q ++  A S  +   +E + +  + +Y + W  GLK     R         ST
Sbjct: 650 QPFLSGAISKTVNLPEEATVEDFERLYFEGWKKGLKALAVYRDNCKVGQPLST 702


>gi|238801852|ref|YP_002922902.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
 gi|216263065|gb|ACJ71933.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
          Length = 723

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/786 (20%), Positives = 296/786 (37%), Gaps = 98/786 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I   
Sbjct: 5   IKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDVC 62

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                +E  Y+ +  R LL  + +E      K P   T          +       G+  
Sbjct: 63  VDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT----------FVKNMERAGLWE 110

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRV 324
           ++        +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM +
Sbjct: 111 KM---DYSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMGM 167

Query: 325 AMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           AM    K+ +  +    ++ Y  LS       TP L          +SC L    D    
Sbjct: 168 AMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAES 227

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A  Q  
Sbjct: 228 LGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEANKQ-K 285

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W LF
Sbjct: 286 SRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLLF 345

Query: 503 SPDEVSDLHDLY----GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           S  +   L+D++      EF +A  +             R++ A  + +  +   + TG 
Sbjct: 346 SYKDAPKLYDMFYTASADEFAMAVGHAV-----HSGVKHRRVKAREIAKLFIQQRYATGR 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------SEETAVCNL 602
            +  F +  N          +  SNLC EI L                     E A+C L
Sbjct: 401 VYPFFTNNANTH--TPFKEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFL 458

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S+         +   D+ A     A+ ++D+VID+  +     +      R++G+GL  
Sbjct: 459 ASL------VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTN 512

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L   ++ Y+S        E  E  S++   AS+ LA+ERG     K + + +G  P
Sbjct: 513 VAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVP 572

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQS 781
             +     + + +  +    R  WD+L +R+K   G+RNS   A  P  + +     +  
Sbjct: 573 PKTANKKIDEKHDAKL----RYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNG 628

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  K + +G+   +                                    ++L
Sbjct: 629 LYPIRDFILTKKSATGNVLFIVPDY--------------------------------EEL 656

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMG 896
           K ++  A++ID   +I+  +  QK+  QA S + Y+D    KK+           A  +G
Sbjct: 657 KYVYEIAWDIDTFDMIDCYAIAQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVG 716

Query: 897 LKTTYY 902
           +KT YY
Sbjct: 717 MKTMYY 722


>gi|325270011|ref|ZP_08136619.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
 gi|324987596|gb|EGC19571.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
          Length = 868

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/747 (19%), Positives = 288/747 (38%), Gaps = 111/747 (14%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRV 324
           ++       FD       L Y   F  + L  ++  ++Y +   +G+  E  P+    R+
Sbjct: 3   KMGTNQTYSFDEA-FQTALAY---FGGDELAARVWVNKYAVKDSHGNIYEKSPEQMHWRI 58

Query: 325 AMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVPDD 379
           A  +A  E + +    A E ++LL  F ++    +       + Q   LS+CF+  +  D
Sbjct: 59  ANEIARIERKYKNPLTAQEVFDLLDHFRYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGD 118

Query: 380 LYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
                  L    E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++  
Sbjct: 119 ADSYGAILHIDEEQVQLMKRRGGVGHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTR 178

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+    +
Sbjct: 179 EVAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKLTDEFMQAAIDD 233

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             +    P +                          E    + +SA ALW K++   +++
Sbjct: 234 RPFVQQFPID------------------------SREPMSAKTVSARALWEKIVHNAWKS 269

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--- 613
             P + F D     S       +    + T             C L S+NL ++  +   
Sbjct: 270 AEPGVLFWDTILRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFT 329

Query: 614 --NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAK 647
              +FD+D  +  ++ A R++D+++D                           H  EK K
Sbjct: 330 DHARFDFDLFSRHVQLAQRIMDDIVDLELEKIELIMEKIRRDPQSDEVKQTEYHLWEKIK 389

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + +   R  G+G+      +  + + Y + EA + A      ++ +A  +SV +A+ERGA
Sbjct: 390 EKSGKGRRTGVGITAEGDMIAAMGLRYGTQEATDFAVSVHRTLALNAYRSSVTMAKERGA 449

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           ++ +         F    I  L E   +             L + ++  G RN  C+ IA
Sbjct: 450 FAIYDADREAHNPF----INRLREADPQ-------------LYEDMRRCGRRNIACLTIA 492

Query: 768 PTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMIS 822
           PT T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++    ++
Sbjct: 493 PTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLT 552

Query: 823 DLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            ++ +        +   I+ +        ATA ++D +  +      QKW+D + S+ + 
Sbjct: 553 WMEANGIDTRKRYTQEEIDGLVKRSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVN 612

Query: 877 LDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST-------LKGVDGKLNAVPV 928
           L     + L + +Y +AW  G K     R  S + V  S         K  D        
Sbjct: 613 LPNQVDEALVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKKEKTADEDKRKDLY 672

Query: 929 TDPNSSTHSLGIPSSCTSDT---ECEV 952
           +     TH L  P          +C+V
Sbjct: 673 SSEEHHTHILERPQVTEIRPKELDCDV 699


>gi|121997262|ref|YP_001002049.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
 gi|121588667|gb|ABM61247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
          Length = 721

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/663 (22%), Positives = 256/663 (38%), Gaps = 70/663 (10%)

Query: 290 DFAFEYLGLQILYDRYFLHI------NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           D   +   L I   +Y L        + S  E  Q    RVA  LA  E  + K+   F 
Sbjct: 18  DVPIQSASLDIWDKKYRLKTKTEEAVDSSIDETYQ----RVARALAEVEETEAKQEHWFE 73

Query: 344 NLLSSFHF--MCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
             L +     + +   + N+G          ++     T+ D + GI   + E  +  K 
Sbjct: 74  RFLWALRHGAVPAGRIISNAGAWDHKPATSTINCTVSGTIHDSMDGILKRVHEAGLTLKS 133

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
             G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H
Sbjct: 134 GAGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGH 193

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEV------ 507
            DV +F+  ++  G    R    N +  I D FM+ +  +  W L  P   DEV      
Sbjct: 194 PDVTDFIRAKREDG----RLRQFNLSLLITDAFMQAMEADEEWPLAFPLTDDEVAAEGID 249

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             D   +  +E+            R   +++R++ A  LW  ++T  ++   P     D 
Sbjct: 250 LQDPEQVLWREWPTREGYVTDGEGRVACRIYRRVKARHLWNLIMTSTYDYAEPGFILIDQ 309

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKL 621
            N  +       + ++N C E  L         C LGSINL     +      +FD+++ 
Sbjct: 310 YNELNNNWFCEEIRATNPCGEQGLPP----YGACLLGSINLTMFVRDPFTPQARFDWEEF 365

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +    R+LDN ++IN   +E+ +      R  G+G +G  S + +L + Y    +V 
Sbjct: 366 REAVAVFTRMLDNTVEINGLPLEQQRAEIQRKRRHGMGFLGLGSTVTMLRMKYGDAASVA 425

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRD 734
             +E  + ++       +ELA+E+G     +            +     D   +  ++  
Sbjct: 426 FTEEVAKQMALTGWRTGLELAKEKGPAPIMEEIYEITPELMRKRPELREDGYEVGEQIPG 485

Query: 735 ELAMNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786
            +   R SR          EL   +  IG R ++  +IAPT TI+       S  I+PS+
Sbjct: 486 RVLWGRYSRYMQRIADEEPELVDELAQIGARFTHHSSIAPTGTISLSLANNASNGIEPSF 545

Query: 787 QNLYVKSNMSGDFTVVNS---FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
            + YV++ +            F    L  R   D   + +           E     L  
Sbjct: 546 AHHYVRNVIREGRKTKEPVDVFSFELLAYRHFIDGDALPE---------GGEEGQGKLPD 596

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
              +A ++ P   ++  +  QKW+D + S   N+  D P  +    IYR A+  GLK   
Sbjct: 597 YFISADQVTPKQHVDIQAAAQKWVDSSISKTANVPTDYPY-EDFKDIYRYAYQQGLKGCT 655

Query: 902 YLR 904
             R
Sbjct: 656 TFR 658


>gi|296316021|ref|YP_003662485.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 5]
 gi|40456144|gb|AAR86122.1| UL39 ribonucleotide reductase large subunit [Bovine herpesvirus 5]
          Length = 800

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/664 (25%), Positives = 279/664 (42%), Gaps = 64/664 (9%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLA---LKET-------EKEKRAVEF 342
           LGLQ      + Y   + G  +E    FF+R+A   A   ++E         +       
Sbjct: 146 LGLQSALKYEEMYLAKLEGGALESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAV 205

Query: 343 YNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
           +N     L     + +TP +  +G     L+SC+L    V      +     E A +   
Sbjct: 206 FNAYLTALYRQLVVPATPIMLFAGRARGSLASCYLLNPQVTSSTEAVEAITTEVARILLN 265

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G  +     L +         +G++  LK+ +  A+A+N   +R   +C Y+E WH
Sbjct: 266 RGGIGISFQSFNRLASR-----DCKRGIMGALKLLDSMAMAINSDSERPTGICVYIEPWH 320

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509
            DV   L++R     D+  R  ++ +  W+PDL   R        +   WTLF  D  S 
Sbjct: 321 CDVRAVLNMRGMLARDESTRCDNLFSCLWVPDLLFDRYLAYLEGCEGVVWTLFD-DRASH 379

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L  L+G  F   YE  ER+    E      +    L   ++  +  TG P++ FKD CN 
Sbjct: 380 LSRLHGPAFAAEYERLEREGLGVEA-----VPVQDLAFLVVRSIVMTGSPFVMFKDACNR 434

Query: 570 RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
                  G  +  SNLCTEI   +  +   VCNL S+NL       +     FD+  L++
Sbjct: 435 HYHMDTAGDALTGSNLCTEIVQRADPDAHGVCNLASVNLPRCVREGEGGALAFDFAALST 494

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
              TA   ++ ++    +  E+A +    HR++G+G  G  + L  L +   SP A  + 
Sbjct: 495 AAATAAIFVNAMMLGGQYPTERAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLN 554

Query: 684 DESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            E  E +    ++ S  L +     +  F  S + +G+ P D             +  + 
Sbjct: 555 VEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYE---------GVVLSL 605

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+    
Sbjct: 606 PRAWARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRP 665

Query: 803 NSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN--IERIPDDLKKIHATAFEIDPMWLI 857
           N  L+  L++   R+      +  L     S+     +  P        TAFE D   LI
Sbjct: 666 NLPLMRALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLI 725

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
           +  + R  ++DQ+QS++L++ EP   K+       +   A+  GLKT  YY + R AT+ 
Sbjct: 726 DLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNN 785

Query: 912 EKST 915
              T
Sbjct: 786 GVFT 789


>gi|119718033|ref|YP_924998.1| vitamin B12-dependent ribonucleotide reductase [Nocardioides sp.
           JS614]
 gi|119538694|gb|ABL83311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioides sp. JS614]
          Length = 956

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/597 (22%), Positives = 243/597 (40%), Gaps = 36/597 (6%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAM 392
           + E    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E   
Sbjct: 114 DAEVFEHELTWLLVHQYFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILNWYKEEGF 173

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAY 451
           + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A    
Sbjct: 174 IFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVV 232

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEV 507
           L+  H D+EEF++ +    D  R   D   A +  DL  K +T    QNA  ++   DE 
Sbjct: 233 LDVDHPDIEEFIETKAREEDKIRALRD---AGFDMDLGGKDITSVQYQNANNSVRVSDEF 289

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
               +  G +F +          R   +V  ++ A  L+RK+    +E   P + + D  
Sbjct: 290 MRAVE-DGTDFGLR--------ARKTGEVIERVDARELFRKISQAAWECADPGLQYDDTI 340

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIR 626
           N        G + +SN C+E     +S     CNL S+NLL    ++  FD +  A  + 
Sbjct: 341 NDWHTNPETGRITASNPCSEYMSLDNSS----CNLASLNLLKFLKDDDTFDAELFAKAVE 396

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       E   ++   +R +G+G     + L  + + Y S     +A   
Sbjct: 397 VIITAMDISICFADFPTEAIGRTTVDYRQLGIGYANLGALLMAMGLGYDSDGGRAMAAAI 456

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTS 742
              ++  +   S ELA   G Y+ +  +                 VR     +  +++ +
Sbjct: 457 TSLMTGTSYKRSAELAGVVGPYNGYARNAEAHKRVMRKHQAANDTVRTLAITDSQVHKLA 516

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV 801
              W ++ +   T G RN+    +APT TI  +    +  I+P +  +  K  + G    
Sbjct: 517 TQAWADVIELGATHGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQ 576

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAFEI---DPMW 855
           + +  V    ++  +    I  +  +    G++   P    +  ++  TA  +    PM 
Sbjct: 577 IVNQTVPRALKKLGYQPEQIEAIVAYIAEHGHVVDAPGLRTEHYEVFDTAMGVRSLKPMG 636

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +   +  Q ++  A S  + L E  + + ++ IY Q+W +GLK T   R  +    
Sbjct: 637 HVRMMAAAQPFLSGAISKTVNLPETATVEDVEDIYLQSWKLGLKATAIYRDNAKVGQ 693


>gi|1718317|gb|AAC57146.1| ORF 61 [Human herpesvirus 8 type M]
 gi|2246520|gb|AAB62645.1| ORF 61 [Human herpesvirus 8]
 gi|261853542|gb|ACY00464.1| ORF61 [Human herpesvirus 8]
 gi|312275209|gb|ADQ57946.1| core gene UL39 family protein [Human herpesvirus 8]
          Length = 792

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/766 (22%), Positives = 298/766 (38%), Gaps = 90/766 (11%)

Query: 245 HHEMQCLYPEYFCRY--IEEGVKARLLHESMMDFDLVYLANDL-KYERDFAFE------Y 295
           H  M+   P    +Y  I  GV    + ES +  ++  L + L  Y R  A+E      Y
Sbjct: 61  HQIMEARCPATLKQYLGIFRGVLGHRV-ESFIQKNIDALEDMLCAYRRSKAYEDTLNCGY 119

Query: 296 LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMG-------------LALKETEKEKRAV 340
           L    LYD Y L   G+    E     FMRV++              LA    E  K   
Sbjct: 120 LSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIEDAKSVS 179

Query: 341 EF------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAM 392
           E       +  L++ H  C+TP L ++G    QL+SCF+   ++ ++   +     + + 
Sbjct: 180 EMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNESGTLDALYHDMSP 239

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L     G+G D T                + +   LK+ +      N    R     AY+
Sbjct: 240 LLASKSGVGLDVTSF-----------SHQKNIASCLKLVDAQVHYFNDNNIRPVGASAYM 288

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL 510
           E WH  + +FL+ +     D  R H +     IP LF +   ++    W LF P    +L
Sbjct: 289 ELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDPATAPNL 346

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             LYG  F+  YE   R          + +        ++  + +TG P++  K+  N  
Sbjct: 347 IKLYGAAFDNEYERLVRAGKYVSCMPLKSM-----MFTLIHTIIKTGSPYVLLKEALNEH 401

Query: 571 SPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------------F 616
                 G+ ++ SNLC EI        T+VCNL +I L       +             F
Sbjct: 402 HWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTDANRPFF 460

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            ++ L   +R AV V++  I    H     ++     R++G+G+ G       L   Y  
Sbjct: 461 CFEALGDAVRVAVLVINACILGGSHPTPGVERG-QKERSMGIGVQGLADVFAELGYGYLD 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            E+ E+     + + + A+  S  L  E     +  ++ S + +G F   +        +
Sbjct: 520 AESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTW-------E 572

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               +   R  WD L K +   G+ NS  +A+ PTA  + + G ++S+ P + N+  K  
Sbjct: 573 GEDASFVPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFANISSKVT 632

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
              +    N     ++   DL        ++ + G +    +   +  ++  TAF+  P 
Sbjct: 633 NKEEVLRPNVTFFKKVLPDDLRV------VRQYGGDVSTFPKHHRERYRVFLTAFDYCPF 686

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            L++ A  R  ++DQ+QS++ +L E    +   L  +    + +GLKT  YY R +  +S
Sbjct: 687 KLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCRVQKQSS 746

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--SSCTSDTECEVCQ 954
           +         G      +    +       P   SC +D EC VCQ
Sbjct: 747 LTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792


>gi|18656499|gb|AAL77800.1|AF389451_7 ribonucleoside-diphosphate reductase alpha chain [Tiger frog virus]
          Length = 565

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/640 (28%), Positives = 260/640 (40%), Gaps = 118/640 (18%)

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA K +  K + A +  +      F  S+P    S T      SCFL  VPD + G+  
Sbjct: 31  TLAEKYSGGKPELAKKLRDYACKGWFGYSSPI-LTSVTGSGLPISCFLLYVPDTIEGLVD 89

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              E   L+   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+
Sbjct: 90  HTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRR 142

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P 
Sbjct: 143 GSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNIHHGVNITDAFMRCVERGENWDLVDPK 202

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +  H                            +SA  LW ++L   F TG P++ F D
Sbjct: 203 SGAVAH---------------------------TVSARELWERILETRFRTGEPYLNFID 235

Query: 566 PCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             N       +  G  +  SNLC EI L ++++ TAVC L S+NL       ++D  +  
Sbjct: 236 AANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRET 289

Query: 623 STIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +   V +LDNVI               +A +S    R+IGLG MG+   L    IP+ 
Sbjct: 290 DLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKCRIPFD 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +       I   A+ A+  LA+ERG      G                      
Sbjct: 350 SEEAVRLTGIIFGGIKSAAVRATRALAKERGEAPDLTG---------------------- 387

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                G+RN++ +A+AP A  A + G S S++P     YV    
Sbjct: 388 --------------------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTR 427

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G    VN +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   
Sbjct: 428 VGSHQAVNPYLKRDLESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRV 487

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++  A+ RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR          
Sbjct: 488 IVRQAAERQRHLCQGQSLNLFFPMGADKTNLSDVHRLAWKSGCKGLYYLR---------- 537

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T  G  G         P  +              EC  CQ
Sbjct: 538 TCAGRTGHKIFEARKSPEKT-------------EECTACQ 564


>gi|56692701|ref|YP_164159.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
 gi|42517413|gb|AAS18079.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
          Length = 572

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/632 (26%), Positives = 263/632 (41%), Gaps = 112/632 (17%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
              + A + Y+   +  F  S+P L +         SCFL  VPD ++G+     E   L
Sbjct: 41  GDAELASKLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWL 98

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG+   W  VRG          KS G IPF+   +    A  QG  R+G+  AY+ 
Sbjct: 99  SVLGGGVAGHWDAVRGPSE-------KSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMS 151

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+        
Sbjct: 152 LSHPDIIEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTSK----- 206

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RS 571
                                   + + A  LW ++L   F TG P++ F D  N     
Sbjct: 207 ----------------------TVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHP 244

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
             +  G  +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR
Sbjct: 245 ALKTKGLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVR 298

Query: 631 VLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +LDNV++               A       R++G+G MG+   L    IP+    A  + 
Sbjct: 299 MLDNVMEDFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLT 358

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           DE    I   A+SAS +LA E+G      G                              
Sbjct: 359 DEIFGAIKAAALSASKKLAAEKGEPPDLVG------------------------------ 388

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
                        G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N
Sbjct: 389 ------------YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKN 436

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +L++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ R
Sbjct: 437 PYLERDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVR 496

Query: 864 QKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q+ + Q QS+NL+    + K KL  ++R AW +  K  YYLR++      +++ K     
Sbjct: 497 QRHLCQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTK----ANRTSRKVFTEF 552

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            ++   T  N S              EC  CQ
Sbjct: 553 FSSAASTSNNKS-------------EECVACQ 571


>gi|170288626|ref|YP_001738864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281412178|ref|YP_003346257.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
 gi|170176129|gb|ACB09181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281373281|gb|ADA66843.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
          Length = 827

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/673 (26%), Positives = 296/673 (43%), Gaps = 94/673 (13%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMR------VAMGL--ALKETEKEKRAVEF----YNL 345
           IL DRYF+   +G+ +E   +    R       A  L  + K+ EK  R  E+    + +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G                                LS+CF+  V D
Sbjct: 82  LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K    +    +  N +   P            
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAV-LNFFNLSVGFP------------ 248

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                  E+  L++          E+ E +       + +K+    L+RK+ T  +++G 
Sbjct: 249 ---MDKKEILKLYE----------EDGELELSHPRSTIRKKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F    N   P      ++S+N C EI       +   CNLGSI++   + N   D 
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYNNGFVDL 351

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S E
Sbjct: 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQE 411

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734
           A + A   M FI+  A   S EL +E+G +   + S +        F +       E+R+
Sbjct: 412 ARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIRE 471

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + M +  R               RN   + IAPT +I+NI   S  ++P++   Y +  
Sbjct: 472 VMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFV 516

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAFEID 852
              D T      VN++ +  L  E +    K     GS+ +I  +P+ +KK+   A +ID
Sbjct: 517 TKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDID 576

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TS 910
           PM  +      Q+++D   S  + + +  +   +  +Y +A    ++     R  S  T 
Sbjct: 577 PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQ 636

Query: 911 VEKSTLKGVDGKL 923
           V    LK  +   
Sbjct: 637 VLTKALKTPEAPK 649


>gi|82407441|pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|82407442|pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|83753672|pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753673|pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753674|pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753675|pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753676|pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753677|pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|85543938|pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543939|pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543940|pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543941|pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543942|pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543943|pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543944|pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|85543945|pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|301598861|pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598862|pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598863|pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598864|pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598865|pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
 gi|301598866|pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
          Length = 644

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/660 (26%), Positives = 293/660 (44%), Gaps = 93/660 (14%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMR------VAMGL--ALKETEKEKRAVEF----YNL 345
           IL DRYF+   +G+ +E   +    R       A  L  + K+ EK  R  E+    + +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G                                LS+CF+  V D
Sbjct: 82  LKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K    +    +  N +   P            
Sbjct: 202 KQGSRRRGALMGILNINHPDIEEFIDAKKENTGEAV-LNFFNLSVGFP------------ 248

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                  E+  L++          E+ E +       + +K+    L+RK+ T  +++G 
Sbjct: 249 ---MDKKEILKLYE----------EDGELELSHPRSTIRKKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F    N   P      ++S+N C EI       +   CNLGSI++   + N   D 
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYNNGFVDL 351

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S E
Sbjct: 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQE 411

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734
           A + A   M FI+ HA   S EL +E+G +   + S +        F +       E+R+
Sbjct: 412 ARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIRE 471

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + M +  R               RN   + IAPT +I+NI   S  ++P++   Y +  
Sbjct: 472 VMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFV 516

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAFEID 852
              D T      VN++ +  L  E +    K     GS+ +I  +P+ +KK+   A +ID
Sbjct: 517 TKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDID 576

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +      Q+++D   S  + + +  +   +  +Y +A    ++     R  S  + 
Sbjct: 577 PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQ 636


>gi|60683069|ref|YP_213213.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|60494503|emb|CAH09300.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|301164584|emb|CBW24143.1| putative ribonucleoside reductase [Bacteroides fragilis 638R]
          Length = 882

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/728 (19%), Positives = 282/728 (38%), Gaps = 101/728 (13%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSR 313
           +    I++     ++ + +  ++  +  +     R F  + L  ++  ++Y +  + G+ 
Sbjct: 22  HIYLLIKKSKTHCIVEKQIYSYEEAFEESL----RYFQGDELAARVWVNKYAVKDSFGNI 77

Query: 314 IE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQ 367
            E  P+    R+A  +A  E +      + + + L   F ++    S  T   +  +   
Sbjct: 78  YEKSPKDMHWRLANEVARIEAKYPNALSSEQLFELFDHFKYIVPQGSPMTGIGNDYQVAS 137

Query: 368 LSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           LS+CF+  +          ++   E   L K  GG+G+D + +R  G+ +  +   S G+
Sbjct: 138 LSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGL 197

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PF++  +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  
Sbjct: 198 VPFMERYSNSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVK 252

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM    +   +T   P +                               ++I A  
Sbjct: 253 LDDAFMSAAVEGRKYTQQYPID------------------------SDHPTTVKEIEASN 288

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAV 599
           LW+K++   +++  P + F D     S       +     S+N C EI L          
Sbjct: 289 LWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLA 348

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------------------ 641
            NL S  +     +  FD+D     +  A R++D++ID+                     
Sbjct: 349 INLYSYVVNPFTKDAYFDFDLFHKHVALAQRIMDDIIDLELEKIERIIEKIDQDPENEEV 408

Query: 642 ------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                   EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A 
Sbjct: 409 KHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAALGMRYGTEEATEFSEKVHKAVALGAY 468

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV++A+ERGA+  +         F    I  L E                 L + +K 
Sbjct: 469 RSSVDMAKERGAFDVYDSEREKNNPF----INRLREADP-------------ALYEDMKK 511

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----L 810
            G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ + T V    V+E     
Sbjct: 512 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAF 571

Query: 811 KQRDLWDEAMISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           ++  ++    ++ ++ +        +   I+ +        AT+ ++D +  +    + Q
Sbjct: 572 EEYIVFHHKFVTWMEANGYDPAKRYTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQ 631

Query: 865 KWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           KW+D + S+ + L     ++L + +Y +AW  G K     R  S + V  S     D K 
Sbjct: 632 KWVDHSISVTINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKE 691

Query: 924 NAVPVTDP 931
              P   P
Sbjct: 692 ELPPCKPP 699


>gi|330466451|ref|YP_004404194.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
 gi|328809422|gb|AEB43594.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
          Length = 954

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/623 (22%), Positives = 239/623 (38%), Gaps = 38/623 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 106 GYFASPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILAVDDSMDSILD 165

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 166 WYKEEGLIFKGGSGSGVNLSRIRSSR-ELLSSGGTASGPVSFMRGADASAGTIKSGGATR 224

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+  +    D  R   D   A +  DL    +     QNA  +
Sbjct: 225 RAAKMVILDVDHPDIEEFVVTKAREEDKIRALRD---AGFDMDLGGADIVSVQYQNANNS 281

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  G  F++          R + +    I A  L+R +    +E   P 
Sbjct: 282 VRVSDEFMTAVE-NGGGFDLR--------GRLDGQTIETIDAKKLFRTISQAAWECADPG 332

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
           + + D  N        G + +SN C+E     +S     CNL S+NL+    A+  F+ +
Sbjct: 333 LQYDDTINDWHTCPETGRITASNPCSEYLHLDNSS----CNLASLNLMKFLRADGGFEVE 388

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K   ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S + 
Sbjct: 389 KFVKSVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSDQG 448

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----E 735
             +A      ++  A   S ELA   GAY  +  +                E++      
Sbjct: 449 RSLAAAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGTVA 508

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
            A+ R +   W +  K     G RNS    +APT TI  +    +  ++P    +  K  
Sbjct: 509 TAVVREATRQWTQGNKIGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKL 568

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---- 850
           + G    + +  V    +   + E  +  +  H    G++   P  LK  H   F+    
Sbjct: 569 VGGGSMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMG 627

Query: 851 ---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R  
Sbjct: 628 ERSIAPMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDN 687

Query: 907 SATSVEKSTLKGVDGKLNAVPVT 929
                  S  K       A    
Sbjct: 688 CKVGQPLSVAKPNKAAEPAPTTA 710


>gi|56418246|gb|AAV91060.1| ribonucleoside-diphosphate reductase alpha subunit [Grouper
           iridovirus]
          Length = 572

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/632 (26%), Positives = 264/632 (41%), Gaps = 112/632 (17%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
              + A + Y+   +  F  S+P L +         SCFL  VPD ++G+     E   L
Sbjct: 41  GDAELASKLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWL 98

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG+   W  VRG          KS G IPF+   +    A  QG  R+G+  AY+ 
Sbjct: 99  SVLGGGVAGHWDAVRGPSE-------KSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMS 151

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+        
Sbjct: 152 LSHPDIVEFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNTSK----- 206

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RS 571
                                 + + + A  LW ++L   F TG P++ F D  N     
Sbjct: 207 ----------------------IVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHP 244

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
             +  G  +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR
Sbjct: 245 ALKTKGLKIRGSNLCNEIHLPTDKDRTAVCCLSSVNL------EMYDEWKDTDLVECVVR 298

Query: 631 VLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +LDNV++               A       R++G+G MG+   L    IP+    A  + 
Sbjct: 299 MLDNVMEDFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLT 358

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           DE    I   A+SAS +LA E+G      G                              
Sbjct: 359 DEIFGAIKAAALSASKKLAAEKGEPPDLVG------------------------------ 388

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
                        G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N
Sbjct: 389 ------------YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKN 436

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +L++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ R
Sbjct: 437 PYLERDLRELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVR 496

Query: 864 QKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q+ + Q QS+NL+    + K KL  ++R AW +  K  YYLR++      +++ K     
Sbjct: 497 QRHLCQGQSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTK----ANRTSRKVFTEF 552

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            ++   T  N S              EC  CQ
Sbjct: 553 FSSTASTSNNKS-------------EECVACQ 571


>gi|326335595|ref|ZP_08201782.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692361|gb|EGD34313.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 551

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/624 (27%), Positives = 266/624 (42%), Gaps = 114/624 (18%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A K   K +    F  +++      S+P  
Sbjct: 16  QILNRGYLLKG-----ESVEGAIDRI-TYAAAKRLFKPELQPAFKEMITKGWISFSSPIW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 70  ANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRHRGSAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDIEEFLQIK----DTGYHIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +++ +                                             
Sbjct: 185 LFFGVCVPDYWIQEMIDGD----------------------------------------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
            +    LW ++L    + G P+I F D  N + PQ +      +HSSNLC+EI L SS+E
Sbjct: 204 -VDKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHSSNLCSEIMLPSSAE 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        FD  K    ++ A+  LD V+          + ++ A+  
Sbjct: 263 ESFICCLSSMNL------ELFDEWKDTKAVKLAIFFLDAVLSEFIEKTKDNYYLQSARNF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    +   I   A  A+ ELA   G   
Sbjct: 317 AIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFMHIQNEAEKATQELAHIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MA+APT
Sbjct: 377 LLKG------------------------------------------YGRRNATTMAVAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G VS  I+P   N Y      G+F   N +L   L+++ + +E +   ++  D
Sbjct: 395 TSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNRYLTQLLEEKGINNEDVWRSIRLSD 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--KKLD 886
           GS+ ++  +    K +  T  EI PM ++  A++RQ++IDQ+QSLNL +  P+   + ++
Sbjct: 455 GSVQHLSELTTHEKNVFKTFKEISPMEIVTQAAQRQQYIDQSQSLNLNIP-PTMPVRDVN 513

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            +  +AW +G+K+ YY RS+S   
Sbjct: 514 KVILEAWKLGVKSLYYQRSQSVAK 537


>gi|148269941|ref|YP_001244401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
 gi|147735485|gb|ABQ46825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
          Length = 827

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/673 (26%), Positives = 296/673 (43%), Gaps = 94/673 (13%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMR------VAMGL--ALKETEKEKRAVEF----YNL 345
           IL DRYF+   +G+ +E   +    R       A  L  + K+ EK  R  E+    + +
Sbjct: 22  ILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDTFFRV 81

Query: 346 LSSFHFMCSTPTLFNSG---------------------------TRHPQLSSCFLTTVPD 378
           L +  F+ ++PTLFN+G                                LS+CF+  V D
Sbjct: 82  LKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPVGD 141

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+ V N     V
Sbjct: 142 SIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVV 201

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG +R+GA+   L   H D+EEF+D +K    +    +  N +   P            
Sbjct: 202 KQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAV-LNFFNLSVGFP------------ 248

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                  E+  L++          E+ E +       + +K+    L+RK+ T  +++G 
Sbjct: 249 ---MDKKEILKLYE----------EDGELELSHPRSTIRKKVKIRELFRKIATNAWKSGD 295

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F    N   P      ++S+N C EI       +   CNLGSI++   + N   D 
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYNNGFVDL 351

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   L+ L IPY S E
Sbjct: 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQE 411

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG----VFPIDSIGLLAEVRD 734
           A + A   M FI+  A   S EL +E+G +   + S +        F +       E+R+
Sbjct: 412 ARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYDDEIRE 471

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + M +  R               RN   + IAPT +I+NI   S  ++P++   Y +  
Sbjct: 472 VMKMTKEFR---------------RNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFV 516

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAFEID 852
              D T      VN++ +  L  E +    K     GS+ +I  +P+ +KK+   A +ID
Sbjct: 517 TKEDGTKEPLLYVNQVLREKLNPEILKKIEKELIEKGSLKDIPDVPEKIKKVFVVALDID 576

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TS 910
           PM  +      Q+++D   S  + + +  +   +  +Y +A    ++     R  S  T 
Sbjct: 577 PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQ 636

Query: 911 VEKSTLKGVDGKL 923
           V    LK  +   
Sbjct: 637 VLTKALKTPEAPK 649


>gi|74316076|ref|YP_313816.1| ribonucleoside-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055571|gb|AAZ96011.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 600

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/629 (25%), Positives = 270/629 (42%), Gaps = 66/629 (10%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTL 358
           I   RY     G         + RVA  +A  E + +   A  FY LL  F F+     L
Sbjct: 15  IWETRY--RFAGEPDIRAS--WQRVAQAVAQAEVDARALWADRFYALLDDFRFLPGGRIL 70

Query: 359 FNSGTRH-PQLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +G+ H   L +CF +  + DD+  IF AL+E A+  ++ GG+G D++ +R  G     
Sbjct: 71  AGAGSGHRVTLFNCFVMGEIADDIEDIFEALKEGALTMQHGGGVGYDFSTLRPAGTIAQA 130

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T   + G + F+ + +     V   G R+GA+ A L   H D+E F+D ++    D    
Sbjct: 131 TGTIASGPVSFMHIWDAMCATVLSTGARRGAMMATLRCDHPDIEAFVDAKR----DPAVL 186

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  + D F+  V  +A W L  P     L D    +  +   ++         +V
Sbjct: 187 RHFNLSVQVSDAFIAAVDADADWPLVFP-----LRDGEPADGAVVRRHWTGSTTAVPCRV 241

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A ALW+++L   ++T  P + F D  N  +       + ++N C EI L +    
Sbjct: 242 LRTVRARALWQRILRAAYDTAEPGVLFVDTINRDNTLAGRETLTTTNPCGEIPLPA---- 297

Query: 597 TAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C+LGS+NL A        + + D   L      AVR LD+VID++ + ++   +   
Sbjct: 298 YGACDLGSLNLTAFVVAPFAADARLDLAALGDAAALAVRFLDDVIDVSRYPLQAQAREAR 357

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+ G   AL LL + Y S  A ++A+ +M  +   A  AS++LA+E+G + + 
Sbjct: 358 FKRRIGLGITGLADALVLLGLDYDSEPARQLAERAMRTVRDAAYRASIDLAREKGGFPAL 417

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S +                   LA     RLP  E++  +   G+RNS+ +AIAP  T
Sbjct: 418 ERSAF-------------------LASGFAGRLP-PEIRDGIARDGIRNSHLLAIAPAGT 457

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ +    S  I+P +     +  +  D +  +  + +      LW            G 
Sbjct: 458 ISLLANNLSSGIEPIFAAEASRRILQPDGSYRSHAVSDYAC--LLWR---------AHGG 506

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIY 889
           +G    + +        A ++DP+  +   +  Q  +D A S  + +    +  + + +Y
Sbjct: 507 VGQPPALVE--------AQQLDPVAHLAMQAALQPAVDNAISKTINVAADIAFARFEALY 558

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           RQA  +GLK     R    T    +  + 
Sbjct: 559 RQAHALGLKGCTVFRPNPVTGAILAEPES 587


>gi|327314698|ref|YP_004330135.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
 gi|326945704|gb|AEA21589.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
          Length = 865

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/740 (20%), Positives = 288/740 (38%), Gaps = 111/740 (15%)

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALK 331
             FD       L Y   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  
Sbjct: 7   YSFDEA-FQTALAY---FGGDELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARI 62

Query: 332 ETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGI 383
           E + +    A E ++LL  F ++    +       H Q   LS+CF+  +    D    I
Sbjct: 63  EHKYKNPLAAQEVFDLLDHFRYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAI 122

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G 
Sbjct: 123 MRIDEEQVQLMKRHGGVGHDMSQIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG- 181

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA+   +   H D E F+D +   G    +    N +  I D FM+    +  +    
Sbjct: 182 RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMQAAVADRPFVQQF 237

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +                             V + +SA  LW K++   +++  P + F
Sbjct: 238 PIDA------------------------RAPMVSKTVSAKTLWGKIVHNAWKSAEPGVLF 273

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDY 618
            D     S       +    + T             C L S+NL ++  +       FD+
Sbjct: 274 WDTILRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVVDPFTDHAHFDF 333

Query: 619 DKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHR 654
           D  +   + A R++D+++D                           H  EK ++ +   R
Sbjct: 334 DLFSRHAQLAQRIMDDIVDLEMEKIDLIMEKIKHDPQSEEVKHAEYHLWEKIREKSGKGR 393

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             G+G+      +  + + Y + EA + +      ++ +A  ASV +AQERGA   +   
Sbjct: 394 RTGVGITAEGDMIAAMGLRYGTQEATDFSVNVHRTLALNAYRASVTMAQERGALGIYDAK 453

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
             +   F    I  L E                +L + +K  G RN  C+ IAPT T + 
Sbjct: 454 REENNPF----INRLKEAD-------------AKLYEDMKKYGRRNIACLTIAPTGTTSL 496

Query: 775 ICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYHD- 828
           +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++    ++ ++ +  
Sbjct: 497 MTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHHKFLTWMEVNGI 556

Query: 829 -----GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                 +   I+ +        ATA ++D +  +      QKW+D + S+ + L     +
Sbjct: 557 DTRKRYTQEEIDGLVKRSPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDE 616

Query: 884 KL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV---DGKLNAVPVTDPNSS----T 935
           +L + +Y +AW  G K     R  S + V  S  K     +   +     D NS+    T
Sbjct: 617 ELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKPEKPSDEEKAKDLNSAEEHHT 676

Query: 936 HSLGIPSSCTSDT---ECEV 952
           H +  P          +C+V
Sbjct: 677 HIMERPQVTEIRPKELDCDV 696


>gi|139472880|ref|YP_001129418.1| ORF61 [Human herpesvirus 8]
 gi|87196890|gb|ABD28916.1| ORF61 [Human herpesvirus 8]
          Length = 792

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/766 (22%), Positives = 298/766 (38%), Gaps = 90/766 (11%)

Query: 245 HHEMQCLYPEYFCRY--IEEGVKARLLHESMMDFDLVYLANDL-KYERDFAFE------Y 295
           H  M+   P    +Y  I  GV    + ES +  ++  L + L  Y R  A+E      Y
Sbjct: 61  HQIMEARCPATLKQYLGIFRGVLGHRV-ESFIQKNIDALEDMLCAYRRSKAYEDTLNCGY 119

Query: 296 LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMG-------------LALKETEKEKRAV 340
           L    LYD Y L   G+    E     FMRV++              LA    E  K   
Sbjct: 120 LSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIEDAKSVS 179

Query: 341 EF------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAM 392
           E       +  L++ H  C+TP L ++G    QL+SCF+   ++ ++   +     + + 
Sbjct: 180 EMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNEPGTLDALYHDMSP 239

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L     G+G D T                + +   LK+ +      N    R     AY+
Sbjct: 240 LLASKSGVGLDVTSF-----------SHQKNIASCLKLVDAQVHYFNDNNIRPVGASAYM 288

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL 510
           E WH  + +FL+ +     D  R H +     IP LF +   ++    W LF P    +L
Sbjct: 289 ELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDPATAPNL 346

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             LYG  F+  YE   R          + +        ++  + +TG P++  K+  N  
Sbjct: 347 IKLYGAAFDNEYERLVRAGKYVSCMPLKSM-----MFTLIHTIIKTGSPYVLLKEALNEH 401

Query: 571 SPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------------F 616
                 G+ ++ SNLC EI        T+VCNL +I L       +             F
Sbjct: 402 HWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTDANRPFF 460

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            ++ L   +R AV V++  I    H     ++     R++G+G+ G       L   Y  
Sbjct: 461 CFEALGDAVRVAVLVINACILGGSHPTPGVERG-QKERSMGIGVQGLADVFAELGYGYLD 519

Query: 677 PEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            E+ E+     + + + A+  S  L  E     +  ++ S + +G F   +        +
Sbjct: 520 AESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTW-------E 572

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               +   R  WD L K +   G+ NS  +A+ PTA  + + G ++S+ P + N+  K  
Sbjct: 573 GEDASFVPRHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFANISSKVT 632

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
              +    N     ++   DL        ++ + G +    +   +  ++  TAF+  P 
Sbjct: 633 NKEEVLRPNVTFFKKVLPDDLRV------VRQYGGDVSTFPKHHRERYRVFLTAFDYCPF 686

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            L++ A  R  ++DQ+QS++ +L E    +   L  +    + +GLKT  YY R +  +S
Sbjct: 687 KLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCRVQKQSS 746

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--SSCTSDTECEVCQ 954
           +         G      +    +       P   SC +D EC VCQ
Sbjct: 747 LTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792


>gi|328885529|emb|CCA58768.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Streptomyces venezuelae ATCC 10712]
          Length = 941

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/655 (21%), Positives = 248/655 (37%), Gaps = 46/655 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E           G      + E    E    L    F  ++P
Sbjct: 73  GLKQLIDR-IVKTYTKAGEEY---------GYFASPADAEIFEHELAYALLHQIFSFNSP 122

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 123 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 181

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  +    +  R
Sbjct: 182 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVKEEEKIR 241

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   D      +  G  F +          R  
Sbjct: 242 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVES-GGTFGLTS--------RMT 292

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 293 GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMHLDN 352

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 353 TS----CNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVITAMDISICFADFPTQKIGE 408

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +   +R +G+G     + L      Y S     +A      ++  +   S ELA   GAY
Sbjct: 409 NTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGAY 468

Query: 709 SSFKGSLW-DQGVFPIDSIGLLAEVR-DELA--MNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +    Q V    +      VR D+L   +   +   W ++ +     G RN+   
Sbjct: 469 DGYARNAAPHQRVMQQHADENTKAVRMDDLDSPIWAAATEAWQDVIRLGAKHGFRNAQAS 528

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 529 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 588

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 589 IVAHIAEHGNVIDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 647

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           L E  + + ++ +Y +AW MG+K     R         S  K  D K      ++
Sbjct: 648 LPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKKKEDEKAEVTAKSE 702


>gi|291280756|ref|YP_003497590.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
 gi|290755458|dbj|BAI81834.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
          Length = 868

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/630 (23%), Positives = 267/630 (42%), Gaps = 97/630 (15%)

Query: 308 HINGSRIEMPQAFFMRVAMGLALK-------------ETEKEKRAVEFYNLLSSFHFMCS 354
                  +     F  VA  +A               +    K+ V ++NL++   FM +
Sbjct: 61  RNKKDYYKSFLDVFHTVAFKVASAKFVKYHNLNNYVTDINFIKKYVTYFNLMAQGIFMPN 120

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +P L N+ + +   S+CF+  + D +  IF  L+  A++ K  GG G +++ +R  GA +
Sbjct: 121 SPLLVNADSNNMCYSACFVLDIDDSMESIFETLKNTALIHKSGGGTGFNFSKLRQKGALV 180

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G+S G + F+++ N     V QGG R+GA    L   H D+EEF+ +++    D +
Sbjct: 181 SSTKGESSGALSFMQIYNSATEHVKQGGVRRGANMGILNVDHPDIEEFIKIKR----DNK 236

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              + N +  I + F++ +  +  W L  P+                             
Sbjct: 237 TLTNFNISVGITNKFLEAIKNDEEWELKEPNTGK-------------------------- 270

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSS 593
            V +K+ A  L+ +++   +  G P +   D  N  +  +++ G + ++N C E  L  +
Sbjct: 271 -VIKKVRAKQLFDEIVKSAWICGDPGLLNIDTINKYNYLKYIKGNITATNPCGEQPLFPN 329

Query: 594 SEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 CNLGSINL          N  FD D  A  +      LD+VIDIN + + +  +
Sbjct: 330 E----ACNLGSINLAKFVKSDAHNNAYFDIDAFAKVVEDCTHFLDDVIDINNYPLPQITE 385

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IGLG+MGF  AL  + I Y S EA+ + D     +      AS++  ++ G +
Sbjct: 386 AVEETRKIGLGVMGFADALIKMGISYDSNEALTMIDSVGSVLKEKTEEASIKYGEQYGVF 445

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                              LL +V+     N+ SR  +  +K +      RN++   IAP
Sbjct: 446 PLADK--------------LLEKVKKLYKENKISRKEYTYIKDKYIK--RRNASLTCIAP 489

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T TI+ I G S  I+P +   Y++ +  G               R +W++++   +  ++
Sbjct: 490 TGTISLIAGCSSGIEPLFSLGYIREDSFGT--------------RIVWNDSVKHFVDKNN 535

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                       + +   TA +I P W ++  S+ Q++++ A S  + L E  + + +  
Sbjct: 536 ------------IPEYVKTAMDISPDWHLKIQSKWQEYVESAVSKTINLPETATEEDIAN 583

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           IY +A  +  K     R +S      +T+ 
Sbjct: 584 IYLKAMELNCKGITVYRDKSKGVQVLNTID 613


>gi|269102468|ref|ZP_06155165.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162366|gb|EEZ40862.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 716

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/654 (21%), Positives = 252/654 (38%), Gaps = 60/654 (9%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEK--EKRAVEFYNLLSS 348
           F+   ++I   +Y L    G  I+      F RVA  L+  E  K  +    EF   L +
Sbjct: 18  FQPTSIEIWNSKYRLKSKYGDAIDLTLDDTFKRVAKALSALEKPKLQQHWYQEFLWALRN 77

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDW 404
                   T       H   +S    TV     D +  I   + E  +  K   G+G D+
Sbjct: 78  GAIPAGRITSNAGAFEHKPATSTINCTVSGIIEDSMDDILAKVHEAGLTLKAGCGIGYDF 137

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ EF+ 
Sbjct: 138 STLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDVRHPDIIEFIR 197

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL----------HDLY 514
            ++  G    R    N +  I + F++ V Q+  W L  P    ++            + 
Sbjct: 198 AKREDG----RLRQFNLSLLITEEFIEAVKQDLSWQLIFPMTAKEIAQDGIDVDNDETMV 253

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             ++    +  E    +   K++R + A  LW  ++T  ++   P     D  N  +   
Sbjct: 254 WADWPTTTDLIENDLGQVACKIYRTLPARNLWNIIMTSTYDYAEPGFILIDKVNQMNNNW 313

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL            +FD+ +    +    
Sbjct: 314 FCEDIRATNPCGEQPLPP----YGACLLGSVNLTKFVRYPFTEQAEFDWKEFRKVVAIFT 369

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   +EK +      R  G+G +G  S L +L   Y S  +V   ++    
Sbjct: 370 RMLDNVVEINHLPLEKQRHEIENKRRHGMGFLGLGSTLTMLRHQYGSAASVAFTEQVALE 429

Query: 690 ISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++      ++ELA+E+G+    +         L  +     D   L  +V+  +   + S
Sbjct: 430 LAVVGWQQALELAKEKGSAPIMEQEFEVTAKMLRQRPEMHDDGYELGDKVKGRILHAKYS 489

Query: 743 RLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           R          EL  ++   G R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 490 RYMQQLAEVEPELVTQLMETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRNV 549

Query: 795 M---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ +    L  R+L ++  +      D            L     TA +I
Sbjct: 550 IVAGKKTKESVDVYSYELLAYRELINDKAMPYSTEPDAM----------LPDYFITADDI 599

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLR 904
            P   +E  +  Q+WID + S    +    + +    IY  A+  GLK     R
Sbjct: 600 TPSQHVEVQAAAQRWIDSSISKTANVPTNFAFESFKDIYMDAYDKGLKGCTTFR 653


>gi|116053647|ref|YP_793974.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894600|ref|YP_002443470.1| NrdJa [Pseudomonas aeruginosa LESB58]
 gi|254237823|ref|ZP_04931146.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|115588868|gb|ABJ14883.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169754|gb|EAZ55265.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|218774829|emb|CAW30647.1| NrdJa [Pseudomonas aeruginosa LESB58]
          Length = 734

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 264/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 36  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 95

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 96  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIG 154

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 155 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 214

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 215 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 270

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 271 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 330

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 331 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 386

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 387 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 446

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 447 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 506

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 507 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 566

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 567 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 616

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 617 VTPAQHVDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 675

Query: 909 T 909
            
Sbjct: 676 A 676


>gi|254243048|ref|ZP_04936370.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
 gi|126196426|gb|EAZ60489.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
          Length = 734

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/661 (24%), Positives = 264/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 36  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 95

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 96  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIG 154

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 155 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 214

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   L
Sbjct: 215 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAL 270

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 271 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 330

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 331 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 386

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 387 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 446

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 447 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 506

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 507 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 566

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 567 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 616

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 617 VTPAQHVDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 675

Query: 909 T 909
            
Sbjct: 676 A 676


>gi|326333208|ref|ZP_08199455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
 gi|325948852|gb|EGD40945.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
          Length = 976

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/652 (21%), Positives = 254/652 (38%), Gaps = 46/652 (7%)

Query: 303 DRYFLH--INGSRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHF 351
            +YF        R +  +    RV           G    E + +    E   LL + HF
Sbjct: 75  TKYFRGALGTDKREQSLKQLIDRVVNTYVASGKENGYFASEADADLFGRELTWLLVNQHF 134

Query: 352 MCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             ++P  FN GT  PQ +S+CF+ +V D +  I    +E  ++ K   G G + + +R  
Sbjct: 135 AFNSPVWFNVGTESPQQVSACFILSVDDSMDSILNWYKEEGLIFKGGSGAGLNLSRIRSS 194

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
              +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +   
Sbjct: 195 KELLKSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKARE 254

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            D  R   D   A +  DL  K ++    QNA  ++   DE     +  GK+F +     
Sbjct: 255 EDKIRALRD---AGFDMDLGGKDISSVQYQNANNSVRVSDEFMRAVEE-GKKFGLR---- 306

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   +V  +I A  L+RK+    +E   P + + D  N        G +  SN C
Sbjct: 307 ----ARTTGEVIEEIDARELFRKISIAAWECADPGLQYDDTINDWHTNPETGRITGSNPC 362

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E     +S     CNL S+NLL    ++  FD  +           +D  I       E
Sbjct: 363 SEYMSLDNSS----CNLASLNLLKFLKDDDTFDAVRFQQACEIVFTAMDISICFADFPTE 418

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              ++   +R +G+G     + L  + + Y S     +A      ++      S ELA  
Sbjct: 419 AIGETTRDYRQLGIGYANLGALLMAMGLGYDSEGGRTMAAAITSLMTGAGYKRSAELAGV 478

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRN 760
            G Y+ +  +                 VR    ++R     +   W ++ +  K  G RN
Sbjct: 479 VGPYAGYARNAEAHQRVMRKHQAANDAVRSINPVDRNIIDAATRVWSDVVEIGKVNGFRN 538

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +    +APT TI  +    +  I+P +  +  K  + G    + + ++     +  +   
Sbjct: 539 AQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQVIPRALTKLGYQAE 598

Query: 820 MISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSL 873
            I  +  +    G++   P    +  ++  TA     + PM  +   +  Q ++  A S 
Sbjct: 599 QIEAIVAYIAEHGHVVDAPGLRQEHYEVFDTAMGKRALQPMGHVRMMAATQPFLSGAISK 658

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + L E  + + ++ +Y ++W +GLK T   R         +  K  + K +
Sbjct: 659 TVNLPETATVEDIEQVYMESWKLGLKATAIYRDNCKVGQPLADGKSENAKKD 710


>gi|313887183|ref|ZP_07820879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923412|gb|EFR34225.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 857

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/732 (21%), Positives = 279/732 (38%), Gaps = 102/732 (13%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    FD  Y A  L+Y   F  + L  ++   +Y L  + G+  E  P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  
Sbjct: 177 AQDG-RRGALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVEDKE 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P                            E K  R I A  LW K++   + +  
Sbjct: 232 YVQTYP------------------------IHSKEPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFAN 613
           P + F D     S       +     S+N C EI L           NL S       A 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDSCRLLAINLYSYVCNPFTAE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD+D     +  A+R++D++ID                               K K+ 
Sbjct: 328 ASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRKIKRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ERGA+ 
Sbjct: 388 TLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKERGAFD 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +         F    I  +A+   +             L + +K  G RN   + IAPT
Sbjct: 448 LYDTEREKDNPF----IQRVAKADPK-------------LYEEMKKFGRRNIAMLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDL 824
            + + +   S  I+P +  +Y  +  ++ +   V     +E     ++  ++    ++ +
Sbjct: 491 GSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNFLTWM 550

Query: 825 KY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           K       H+ S   ++ +        ATA ++D +  ++   R Q+W+D + S+ + L 
Sbjct: 551 KANGYDPNHNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISVTINLP 610

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV-EKSTLKGVDGKLNAVPVTDPNSSTH 936
              S + +  +Y +AW  G K     R  S + V      +  + +  +   + P     
Sbjct: 611 SDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQKKEQQAKSEQESAPEVPVE 670

Query: 937 SLGIPSSCTSDT 948
              +  +     
Sbjct: 671 PTPLSQTVRKRP 682


>gi|260593155|ref|ZP_05858613.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
 gi|260534863|gb|EEX17480.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
          Length = 902

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/727 (20%), Positives = 283/727 (38%), Gaps = 101/727 (13%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFF 321
           +K  ++      FD VY    L Y   F  + L  ++  ++Y +  + G+  E  P+   
Sbjct: 33  LKRTMVTNQTYSFDEVY-QTSLAY---FNGDELAARVWVNKYAMKDSLGNIYEKSPEQMH 88

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTV 376
            R+A  +A  E + +      E +NLL  F ++    +         Q   LS+CF+  +
Sbjct: 89  RRIAKEIARIEHKYKNPLTEEEIFNLLDHFRYIIPAGSPMTGIGNDHQVASLSNCFVIGL 148

Query: 377 P---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D    I    +E   L K  GG+G+D + +R  G+ +H +   S G++PF++  ++
Sbjct: 149 DGDADSYGAILRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVHNSALTSTGLVPFMERYSN 208

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+  
Sbjct: 209 STREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMEEG----KVTGANVSVKITDEFMRAA 263

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  +    P + ++                         K  +K+SA ALW K++   
Sbjct: 264 IDDKPYEQQFPIDSTE------------------------PKCTKKVSAKALWEKIVHNA 299

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +++  P + F D     S       +    + T             C L S+NL ++  +
Sbjct: 300 WKSAEPGVLFWDTIIRESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSLNLYSYVLD 359

Query: 614 NQ-----FDYDKLASTIRTAVRVLDNVID------------------------INCHTIE 644
                  FD+D  +   + A R++D+++D                           H  E
Sbjct: 360 PFTDHACFDFDLFSKHAQLAQRIMDDIVDLEMEKIDLIMAKVKSDPQVDEVKEAEYHLWE 419

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K K  +   R  G+G+      +  + + Y + EA + +      ++ +A  +SV +A+E
Sbjct: 420 KIKDKSGKGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVSVHRALALNAYRSSVRMAEE 479

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA++ +     +   F +      A                 +L + +   G RN  C+
Sbjct: 480 RGAFAIYDAKREEHNPFILRLKEADA-----------------QLYEEMIRYGRRNIACL 522

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEA 819
            IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E+    ++  ++   
Sbjct: 523 TIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRK 582

Query: 820 MISDLKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            ++ ++ +        S   I+ +        ATA ++D +  +      QKW+D + S+
Sbjct: 583 FLTWMEVNGIDTQKKYSQEEIDTLVKRSPYYKATANDVDWLMKVRMQGTIQKWVDHSISV 642

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            + L     + L + +Y +AW  G K     R  S + V  S  K    K       +  
Sbjct: 643 TVNLPNSVDEALVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKKETNTAEEEKV 702

Query: 933 SSTHSLG 939
               S  
Sbjct: 703 KDLTSAE 709


>gi|255011258|ref|ZP_05283384.1| putative ribonucleoside reductase [Bacteroides fragilis 3_1_12]
          Length = 855

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/715 (19%), Positives = 278/715 (38%), Gaps = 101/715 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           ++ + +  ++  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A
Sbjct: 8   IVEKQIYSYEEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLA 63

Query: 326 MGLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
             +A  E +      + + + L   F ++    S  T   +  +   LS+CF+  +    
Sbjct: 64  NEVARIEAKYPNALSSEQLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSA 123

Query: 381 YGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
                 ++   E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   
Sbjct: 124 DSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTRE 183

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM    +  
Sbjct: 184 VAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGR 238

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +T   P +                               ++I A  LW+K++   +++ 
Sbjct: 239 KYTQQYPID------------------------SDHPTTVKEIDASNLWKKIVHNAWKSA 274

Query: 558 HPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFA 612
            P + F D     S       +     S+N C EI L           NL S  +     
Sbjct: 275 EPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTK 334

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCH------------------------TIEKAKK 648
           +  FD++     +  A R++D++ID+                             EK  K
Sbjct: 335 DAYFDFELFHKHVALAQRIMDDIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYK 394

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  L + Y + EA + +++  + ++  A  +SV++A+ERGA+
Sbjct: 395 KSGQGRRTGVGITAEGDMLAALGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAF 454

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +         F    I  L E                 L + +K  G RN  C+ IAP
Sbjct: 455 DVYDTEREKNNPF----INRLREADP-------------ALYEDMKKYGRRNIACLTIAP 497

Query: 769 TATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y  +  ++ + T V    V+E     ++  ++    ++ 
Sbjct: 498 TGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTW 557

Query: 824 LKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           ++ +        +   ++ +        AT+ ++D +  +    + QKW+D + S+ + L
Sbjct: 558 MEANGYDPAKRYTQEEVDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINL 617

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
                ++L + +Y +AW  G K     R  S + V  S     D K    P   P
Sbjct: 618 PNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 672


>gi|189462576|ref|ZP_03011361.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
 gi|189430737|gb|EDU99721.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
          Length = 847

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/715 (21%), Positives = 286/715 (40%), Gaps = 101/715 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    +D  Y A+ L+Y   F  + L  ++  ++Y +  + G+  E  P     R+A 
Sbjct: 1   MEKQTYSYDEAYKAS-LEY---FKGDELAARVWVNKYAVKDSFGNIYEKSPVDMHWRIAN 56

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EVARIEAKYPNALSSEELFGLFDHFKYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGKAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+   +N  
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAVENRT 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + +D                         +V ++I+A ALW+K++   +++  
Sbjct: 232 YTQQFPIDSND------------------------PQVKKEINASALWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FD++     +  A R++D++ID                           H  EK  + 
Sbjct: 328 AYFDFELFKKHVGLAQRIMDDIIDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +   R  G+G+      L  + + Y + EA E +++  + I+  A  +SV +A+ERGA+ 
Sbjct: 388 SGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEKVHKTIAIEAYRSSVNMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +  +      F    I  + +                EL + +K  G RN  C+ IAPT
Sbjct: 448 IYDAAREVNNPF----INRIKDADP-------------ELYEDMKKYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEA--MIS 822
            T + +   +  I+P +  +Y  +  ++ +   V+   V+E     ++  ++        
Sbjct: 491 GTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDANVHVDFVDETGDAFEEYVVFHHKFLTWM 550

Query: 823 DLKYHDGSIGNIERIPDDL----KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +  +D      +   DDL        AT+ ++D +  ++   R QKW+D + S+ + L 
Sbjct: 551 QINGYDPDKHYTQEEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
               ++L + +Y +AW  G K     R  S   V  ST K  D K        P 
Sbjct: 611 NSVDEELVNRLYVEAWRSGCKGCTVYRDGSRAGVLVSTQKKKDKKEEECQCKPPQ 665


>gi|45686076|ref|YP_003839.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum virus]
 gi|37722500|gb|AAP33245.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum stebbensi
           virus]
          Length = 565

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/591 (29%), Positives = 253/591 (42%), Gaps = 95/591 (16%)

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA K +  K K A +  +      F  S+P    S T      SCFL  VPD + G+  
Sbjct: 31  ALAEKYSGCKPKLAEKLRDYACKGWFGYSSPI-LTSVTGSGLPISCFLLYVPDTIEGLVD 89

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
              E   L+   GG+   W  VRG  A       KS G IPFL   +    A  QG  R+
Sbjct: 90  HTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADMSAYWQGKVRR 142

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D+FM  V +   W L  P 
Sbjct: 143 GSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDVFMMCVERGENWDLVDPK 202

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +  H                            +SA  LW ++L   F TG P++ F D
Sbjct: 203 SGAVAH---------------------------TVSARELWERILETRFRTGEPYLNFID 235

Query: 566 PCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
             N       +  G  +  SNLC EI L ++++ TAVC L S+NL       ++D  +  
Sbjct: 236 AANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL------ERYDEWRET 289

Query: 623 STIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +   V +LDNVI               +A +S    R+IGLG MG+   L    IP+ 
Sbjct: 290 DLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFD 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +       I   A+ A+  LA+ERG      G                      
Sbjct: 350 SEEAVRLTGIIFGGIKSAAVRATRALAKERGEAPDLTG---------------------- 387

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                G+RN++ +A+AP A  A + G S S++P     YV    
Sbjct: 388 --------------------CGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTR 427

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G    VN +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   
Sbjct: 428 VGSHQAVNPYLKRDLESLGLDTEKVWDSIVLNKGSVQHIAALPDSLKKVYKTSFEMDQRV 487

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRS 905
           +++ A+ RQ+ + Q QSLNL+    + K  L  ++R AW  G K  YYLR+
Sbjct: 488 IVKQAAERQRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLRT 538


>gi|253566262|ref|ZP_04843716.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|265766962|ref|ZP_06094791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
 gi|251945366|gb|EES85804.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|263253339|gb|EEZ24815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
          Length = 847

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/694 (20%), Positives = 270/694 (38%), Gaps = 97/694 (13%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSG 398
           L   F ++    S  T   +  +   LS+CF+  +          ++   E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYPID------------ 239

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A  LW+K++   +++  P + F D     S       
Sbjct: 240 ------------SDHPTTVKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +     S+N C EI L           NL S  +     +  FD+D     +  A R++D
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKDAYFDFDLFHKHVALAQRIMD 347

Query: 634 NVIDINCH------------------------TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SV++A+ERGA+  +         F    I  L
Sbjct: 408 LGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYDSEREKNNPF----INRL 463

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E                 L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 464 READP-------------ALYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIP 838
           Y  +  ++ + T V    V+E     ++  ++    ++ ++ +        +   I+ + 
Sbjct: 511 YKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYTQEEIDELV 570

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGL 897
                  AT+ ++D +  +    + QKW+D + S+ + L     ++L + +Y +AW  G 
Sbjct: 571 AKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVEAWKSGC 630

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           K     R  S + V  S     D K    P   P
Sbjct: 631 KGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 664


>gi|134288270|ref|YP_001110433.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
 gi|134132920|gb|ABO59630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 830

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/612 (25%), Positives = 250/612 (40%), Gaps = 75/612 (12%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------GIFGA 386
           + ++ + FY  L    F+ +      +GT     L +CF+  V D +        GI+ A
Sbjct: 54  RAEKEIVFYEALEHG-FVPAGRINSAAGTDIKATLINCFVQPVGDSVSEYKNGVPGIYPA 112

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L + A   +  GG+G D++ +R  GA + GT  ++ G + F+ V + +   V   G R+G
Sbjct: 113 LLQAAETMRRGGGVGYDFSEIRPAGALVSGTFSRASGPVSFMAVFDRSCSTVESAGARRG 172

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A    L   H D+  F+  +     D+    + N +  + D FM+ V ++    L+   E
Sbjct: 173 AQMGALRVDHPDILTFIHAK-----DKGDLTNFNISIGVTDAFMRAVERDEEVELWHAAE 227

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                           E Y R+       V+RK  A  +W  ++   ++   P I F   
Sbjct: 228 P--------HPDVKQPETYRREDG---TWVYRKQRAREIWEAVMLSTYDHAEPGILFISR 276

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKL 621
            N  +    V  + ++N C E  L         C+LGS+NL     N       FD++  
Sbjct: 277 INEENNLHAVETIRTTNPCGEQPLPP----YGCCDLGSVNLTMFVRNAFTDQAYFDFEGF 332

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +R  VR+LD V+D     + + +      R IGLG +G  SAL +L I Y S +   
Sbjct: 333 KDLVRVGVRMLDLVLDATFWPLPEQRDEAMAKRRIGLGFLGLGSALVMLGIRYDSDKGCS 392

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A +  E +   A  AS+ELA+E+GA+ + +   + +  F                    
Sbjct: 393 MAAQISEVMRDEAYLASIELAKEKGAFPALEVEQYLESGF-------------------A 433

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDF 799
            RLP + ++ +++  G+RNS+ ++IAPT TI  A     S  I+P++   Y +     D 
Sbjct: 434 KRLP-EHIRAQIREHGIRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMADG 492

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           T    F V +   R          L  H G  GN + +P        TA E+  M  +  
Sbjct: 493 TH-EIFEVADHAYR----------LYRHRG--GNTDSLPGS----FVTALEMSAMDHLRM 535

Query: 860 ASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               Q +ID + S  + +      +    +Y  AW  GLK     R  S      S +  
Sbjct: 536 LQAVQPYIDTSISKTVNVPADYPYEDFQNLYFAAWKAGLKGLATYRPNSVLGSVLS-VDA 594

Query: 919 VDGKLNAVPVTD 930
                 AV VT 
Sbjct: 595 PAAPEKAVEVTP 606


>gi|107104599|ref|ZP_01368517.1| hypothetical protein PaerPA_01005678 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 264/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 16  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 75

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 76  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIG 134

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 135 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 194

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 195 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 250

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 251 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 310

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 311 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 366

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 367 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 426

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 427 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 486

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 487 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 546

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 547 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 596

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 597 VTPAQHVDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 655

Query: 909 T 909
            
Sbjct: 656 A 656


>gi|83647576|ref|YP_436011.1| ribonucleotide reductase subunit alpha [Hahella chejuensis KCTC
           2396]
 gi|83635619|gb|ABC31586.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 712

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/661 (20%), Positives = 257/661 (38%), Gaps = 70/661 (10%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQA-----FFMRVAMGLALKETE--KEKRAVEFYNLLSS 348
             + I   +Y L         P        + RVA  L+  E +  +EK   +F   L +
Sbjct: 17  ASVDIWETKYQLKTKSG---SPVDKDILGTYERVAKALSSVEADSIREKVLADFVWALEN 73

Query: 349 FHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +   + N+G    +      +     ++ D +  I     E  +  K   G+G +
Sbjct: 74  GAI-PAGRIMSNAGAEEHKPATSTINCTVSGSIMDSMDDILLKNHEAGLTLKAGCGIGYE 132

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+
Sbjct: 133 FSTLRPKGAYVAGAGATTSGPLSFMDIFDKMCFTVSSAGGRRGAQMATFDVHHPDVFDFV 192

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYGK--- 516
             ++  G    R    N +  I + F+K V  +  W    P    +      D+  +   
Sbjct: 193 RAKREDG----RLRQFNLSLLITEDFIKAVQNDEDWRFSFPITRKEAEEDNIDVNDETQY 248

Query: 517 ---EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +F +       ++ R   +++R + A ++W  ++T  ++   P     D  N  +  
Sbjct: 249 LYRDFPVKDGYMTDESGRVVCRIYRTVKARSIWDAIMTSTYDFAEPGFILIDKVNEMNNN 308

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL          N +F++DK    +   
Sbjct: 309 WFCENIRATNPCGEQPLPPYGS----CLLGSVNLTKFVEYPFTENAKFNFDKYRKVVAIF 364

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E  +      R  G+G++G  S L +L +PY S E+V   +E   
Sbjct: 365 TRMLDNVVEINGLPLEGQRHEIQYKRRHGMGILGLGSTLAMLRMPYGSDESVSFTEEVCR 424

Query: 689 FISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++       +ELA+E+G     + +       L  +     D +    +++ ++   + 
Sbjct: 425 EMALEGWRQGLELAKEKGPAPIMEDTFIVTEEMLRLRPEMAKDGLKAGDKLKGKVLHAKY 484

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          +L   +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 485 SRYMQRVAEADPKLVDALAKKGARFTHHTSIAPTGTISLSLANNASNGIEPSFAHHYSRN 544

Query: 794 NM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         ++ F    L  R L +   +             E     L     T+ +
Sbjct: 545 VIRQGKKTKEKMDVFSYELLAYRHLVNPKAMPF----------SEDAEAQLPAYFTTSDD 594

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  Q W+D + S   N+  D P G+    IY  A+  GLK     R    
Sbjct: 595 VTPKQHVDIQAAAQLWVDSSISKTANVPTDFPYGE-FKDIYMYAYEKGLKGCTTFRFNPE 653

Query: 909 T 909
            
Sbjct: 654 A 654


>gi|332300423|ref|YP_004442344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177486|gb|AEE13176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 857

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/736 (21%), Positives = 283/736 (38%), Gaps = 110/736 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    FD  Y A  L+Y   F  + L  ++   +Y L  + G+  E  P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LEY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V  +  
Sbjct: 177 AQDG-RRGALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDDKE 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P                            E K  R I A  LW K++   + +  
Sbjct: 232 YVQTYP------------------------IHSKEPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S       +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEK 645
                 FD+D     +  A+R++D++ID                               K
Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K+     R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ER
Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  +A+   +             L + +K  G RN   + 
Sbjct: 444 GAFDLYDTEREKDNPF----IQRVAKADPK-------------LYEEMKKFGRRNIAMLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAM 820
           IAPT + + +   S  I+P +  +Y  +  ++ +   V     +E     ++  ++    
Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546

Query: 821 ISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           ++ +K       H+ S   ++ +        ATA ++D +  ++   R Q+W+D + S+ 
Sbjct: 547 LTWMKANGYDPNHNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISVT 606

Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV-EKSTLKGVDGKLNAVPVTDPN 932
           + L    S + +  +Y +AW  G K     R  S + V      +  + +  +   + P 
Sbjct: 607 INLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQKKEQQAKSEQESAPE 666

Query: 933 SSTHSLGIPSSCTSDT 948
                  +  +     
Sbjct: 667 VPVEPTPLSQTVRKRP 682


>gi|295836140|ref|ZP_06823073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
 gi|197695235|gb|EDY42168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
          Length = 964

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/640 (22%), Positives = 244/640 (38%), Gaps = 46/640 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  Q F             + E    E  + L    F  ++P
Sbjct: 100 GLKQLIDR-IVKTYRKAGEDNQYF---------ASPADAEIFEHELAHALLHQIFSFNSP 149

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 150 VWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 208

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +  R
Sbjct: 209 TSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVEGFIETKVKEEEKIR 268

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK              R  
Sbjct: 269 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGKFG---------LRSRLT 319

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 320 GEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMHLDN 379

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       EK  +
Sbjct: 380 TS----CNLASLNLMKFLKDDGNGNQSFEAERFAKLVELVITAMDISICFADFPTEKIGE 435

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 436 NTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAISSLMTGTAYRRSAELAAVVGPY 495

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             F  +            D+ G    + D +  +   +   W ++ +  +  G RN+   
Sbjct: 496 EGFARNATAHKRVMKQHADANGAAVRMDDLDTPVWAAATEAWQDVLRLGEKNGFRNAQAS 555

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 556 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 615

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I PM  +   +  Q WI  A S  + 
Sbjct: 616 IVAHIAENGNVVDAPA-LKTEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTVN 674

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E  + ++++ IY +AW +G+K     R         S 
Sbjct: 675 MPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSA 714


>gi|311742740|ref|ZP_07716549.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
 gi|311314368|gb|EFQ84276.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
          Length = 970

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/652 (21%), Positives = 245/652 (37%), Gaps = 46/652 (7%)

Query: 303 DRYFLHINGSRIEMPQ---AFFMRVAMGLALK---------ETEKEKRAVEFYNLLSSFH 350
            +YF    G+  E  Q       RV +              E + E    E  ++L    
Sbjct: 78  TKYFRGAVGTP-EREQSLRQLLDRVVLTYTQAGRDHGYFTTEADAEVFEHELTHMLLHQV 136

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G G + + +R 
Sbjct: 137 FSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILNWYREEGLIFKGGSGAGLNLSRIRS 196

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+ EF+  +  
Sbjct: 197 SKELLRSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIAEFVATKAR 256

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             D  R   D      +    +  V  QNA  ++   DE           F  A E+   
Sbjct: 257 EEDKIRVLRDAGYDMDLGGADITSVQYQNANNSIRVNDE-----------FMRAVEDGTE 305

Query: 528 QADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              RG +   V   + A +LW  +    +    P I +    N        G + +SN C
Sbjct: 306 FGLRGRMTGEVIETVDARSLWNDIAEAAWACADPGIQYDGTINDWHTSPEAGRITASNPC 365

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E     +S     CNL S+NLL    +   FD +     +   +  +D  I       E
Sbjct: 366 SEYMHLDNSS----CNLASLNLLKFLKDDGSFDTETFVKAVEFIITAMDISICFADFPTE 421

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
               +   +R +G+G     + L    + Y S     +A      ++  +   S ELA  
Sbjct: 422 AIGDTTRAYRQLGIGFANLGALLMASGLAYDSDGGRALAGAITSLMTGTSFRRSAELAGV 481

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRN 760
            G Y  F  +                E+R     ++A++R +   W +  K  +  G RN
Sbjct: 482 VGPYDGFAQNASAHERVMRKHQAANDEIRTLHSMDIAVHREAAKQWADNLKIGEKNGWRN 541

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDE 818
           S    +APT TI  +    +  I+P +  +  K     G   +VN  +   LK+     E
Sbjct: 542 SQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTIPAALKKLGYAGE 601

Query: 819 AMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSL 873
            + + ++Y   +G + +   +  +  ++  TA     I PM  +   +  Q ++  A S 
Sbjct: 602 TIEAIVEYIAENGHVVDAPGLKTEHYEVFDTAMGQRSIKPMGHVHMMAACQPFLSGAISK 661

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + L E  S +++  +Y Q W +GLK     R         S  K      +
Sbjct: 662 TVNLPESASVEEIKDVYFQGWKLGLKALAVYRDNCKVGQPLSDGKEAKSSGD 713


>gi|313149069|ref|ZP_07811262.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137836|gb|EFR55196.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 847

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/694 (20%), Positives = 270/694 (38%), Gaps = 97/694 (13%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSG 398
           L   F ++    S  T   +  +   LS+CF+  +          ++   E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGRKYTQQYPID------------ 239

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A  LW+K++   +++  P + F D     S       
Sbjct: 240 ------------SDHPTTVKEIDASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VH----SSNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +     S+N C EI L           NL S  +     +  FD++     +  A R++D
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKDAYFDFELFHKHVALAQRIMD 347

Query: 634 NVIDINCH------------------------TIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA + +++  + ++  A  +SV++A+ERGA+  +         F    I  L
Sbjct: 408 LGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAFDVYDTEREKNNPF----INRL 463

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E                 L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 464 READP-------------ALYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIP 838
           Y  +  ++ + T V    V+E     ++  ++    ++ ++ +        +   ++ + 
Sbjct: 511 YKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYTQEEVDELV 570

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGL 897
                  AT+ ++D +  +    + QKW+D + S+ + L     ++L + +Y +AW  G 
Sbjct: 571 AKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVEAWKSGC 630

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           K     R  S + V  S     D K    P   P
Sbjct: 631 KGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPP 664


>gi|297626482|ref|YP_003688245.1| Vitamin B12-dependent ribonucleotide reductase
           (ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922247|emb|CBL56819.1| Vitamin B12-dependent ribonucleotide reductase
           (Ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 963

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/667 (21%), Positives = 251/667 (37%), Gaps = 48/667 (7%)

Query: 303 DRYFLH--INGSRIEMPQAFFMRV-----AMGLALKE----TEKEKRAVEFYNLLSSFHF 351
            +YF        R    +    RV     A GLA        + E    E   +L   +F
Sbjct: 75  TKYFRGALGTDQRESSLKQLIDRVVKKYSATGLAEGYFASPEDAEVFEQELTWMLVHQYF 134

Query: 352 MCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R  
Sbjct: 135 SFNSPVWFNVGTASPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSS 194

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
              +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +   
Sbjct: 195 KELLRSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFVETKARE 254

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            D  R   D   A +  DL  + +T    QNA  ++   DE        G  F +     
Sbjct: 255 EDKIRALRD---AGFDMDLGGRDITSVQYQNANNSVRVSDEFMQAVQ-DGTPFGLK---- 306

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   +V  ++ A  LW K+    +E   P + +    N        G +++SN C
Sbjct: 307 ----ARTTGEVIEEVDAKDLWGKIAKAAWECADPGMQYDGTINSWHTTPESGRINASNPC 362

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E     +S     CNL S+NLL    ++  FD +     +   +  +D  I       E
Sbjct: 363 SEYMSLDNSS----CNLASLNLLKFLRDDDSFDTELFTKAVELIITAMDISICFADFPTE 418

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
               +   +R +G+G     + L  L   Y S     +A      ++  A   S E+A  
Sbjct: 419 AIGDTTRDYRQLGIGYANLGALLMALGKGYDSEGGRALAAAITSLMTGTAYRRSAEMAGV 478

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRN 760
            G Y  +  +                 + +    +  + R ++  WD+     +  G RN
Sbjct: 479 VGPYKGYARNAESHQRVIRKHGAANEALDNVAAIDTEVRRAAQHEWDKADVMGQANGFRN 538

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +    +APT TI  +    +  I+P +  +  K  + G    + +  V        +D  
Sbjct: 539 AQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQMVNHTVERALTNLGYDAT 598

Query: 820 MISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSL 873
               +  +    GN+   P   +   ++  TA     I PM  +   +  Q ++  A S 
Sbjct: 599 TRQSIVDYVAEKGNVVGAPGLREADYEVFDTAMGVRAIAPMGHVRMMAAVQPFLSGAISK 658

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            + L E  + +++  +Y Q W +GLK     R         S+  G  GK +    TD  
Sbjct: 659 TVNLPESATVEEIADVYMQGWKLGLKALAVYRDNCKVGQPLSS--GNQGKDDNKSTTDQA 716

Query: 933 SSTHSLG 939
                + 
Sbjct: 717 KPEVRVE 723


>gi|300776392|ref|ZP_07086250.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501902|gb|EFK33042.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 552

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/623 (27%), Positives = 262/623 (42%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q+L   Y L       E       R+    A K   K +    F  +++      S+P  
Sbjct: 17  QMLNRGYLLKG-----ETVDGAIDRI-TTAAAKRLYKPELQPAFKEMITKGWISFSSPVW 70

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT+     SCF   +PD + GI   + E  M  K  GG    +  +R  G  +   N
Sbjct: 71  ANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELRNRGTAVTD-N 129

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++    D      +
Sbjct: 130 GKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK----DIGSPIQN 185

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           + T   +PD +M+ +                                             
Sbjct: 186 LFTGVCVPDYWMQDMIDGD----------------------------------------- 204

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    +W ++L    + G P+I F D  N   PQ +      V++SNLC+EI L S+ E
Sbjct: 205 -MEKRKVWARVLESRQQKGLPYIFFTDNVNRNKPQVYKDLGMTVNASNLCSEIMLPSTME 263

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K    ++ A+  LD V+          + ++ A+  
Sbjct: 264 ESFICCLSSMNL------ELYDEWKDTDAVKLAIYFLDAVLSEFIDKTEGNYYLQGARNF 317

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    +   I   A  AS ELA   G   
Sbjct: 318 AMRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRHIKEQAEQASRELANIYGEPE 377

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G+RN+  MAIAPT
Sbjct: 378 VLKG------------------------------------------YGLRNTTTMAIAPT 395

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E     +  + 
Sbjct: 396 TSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLEEKGLDNEETWRTIMLNH 455

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
           GS+ ++  +  + K +  T  EI PM +I  A++RQ++IDQAQSLNL +      K +++
Sbjct: 456 GSVQHLNELTPEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIPSTMPVKDVNY 515

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +Y +AW  G+KT YY RS S + 
Sbjct: 516 LYIEAWKKGVKTLYYQRSSSVSK 538


>gi|15600690|ref|NP_254184.1| NrdJa [Pseudomonas aeruginosa PAO1]
 gi|9951832|gb|AAG08882.1|AE004962_6 NrdJa [Pseudomonas aeruginosa PAO1]
          Length = 734

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 264/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 36  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 95

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 96  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIG 154

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 155 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 214

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 215 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 270

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 271 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 330

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 331 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 386

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 387 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 446

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 447 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 506

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 507 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 566

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 567 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 616

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 617 VTPAQHMDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 675

Query: 909 T 909
            
Sbjct: 676 A 676


>gi|333029143|ref|ZP_08457204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
 gi|332739740|gb|EGJ70222.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
          Length = 855

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 154/703 (21%), Positives = 277/703 (39%), Gaps = 113/703 (16%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           +     +               F+ + L  ++  ++Y +  + GS  E  P     R+A 
Sbjct: 1   MKTYSYEEAFEESLKY------FSGDELAARVWVNKYAMKDSYGSIYEKSPADMHWRIAN 54

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            LA  E +      + E + LL  F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 55  ELARVEKKYPNPLTSEELFKLLDKFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVEGPGD 114

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 115 SYGGIIKMDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREV 174

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM     + G
Sbjct: 175 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KITGANVSVKIDDEFMTAAINDKG 229

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P                                 ++I A +LW K++   +++  
Sbjct: 230 YIQQYP------------------------IYSETPTTVKEIKAKSLWEKIVHNAWKSAE 265

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 266 PGVLFWDTIIKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVENP 321

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                +F++D     +  A R++D++ID+    IE                        K
Sbjct: 322 FTDKAKFNFDLFKKHVALAQRIMDDIIDLELEKIETILSKIKSDPENEEVKRTEYNLWQK 381

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K     R  G+G+      L  L++ Y + EA + ++E  + I+  A +ASV++A+ER
Sbjct: 382 IYKKTGQGRRTGVGITAEGDMLAALNLRYGTEEATDFSEEVHKTIALAAYNASVDMAKER 441

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L +                 L +++K  G RN  C+ 
Sbjct: 442 GAFEVYDTDREANNPF----INRLKDAD-------------SALYEKMKKYGRRNIACLT 484

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE-----------LKQR 813
           IAPT T + +   +  I+P +  +Y  +  ++ + T V    V+E             + 
Sbjct: 485 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKF 544

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             W EA   +      +   I+++ ++     AT+ ++D +  ++   R QKW+D + S+
Sbjct: 545 VTWMEAKGYN-PAKRYTQEEIDKLVEESPYNKATSNDVDWLMKVKMQGRIQKWVDHSISV 603

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + L     ++L + +Y +AW  G K     R  S + V  +T
Sbjct: 604 TINLPNDVNEELVNKLYVEAWKAGCKGCTVYRDGSRSGVLIAT 646


>gi|238063474|ref|ZP_04608183.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
 gi|237885285|gb|EEP74113.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
          Length = 972

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/611 (22%), Positives = 238/611 (38%), Gaps = 38/611 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 111 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSR-ELLSSGGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+  +    D  R   D   A +  DL    +     QNA  +
Sbjct: 230 RAAKMVILDVDHPDIEEFVITKAREEDKIRALRD---AGFDMDLGGNDIVSVQYQNANNS 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  G  F++          R + +    I A  L+R +    +E   P 
Sbjct: 287 VRVSDEFMSAVE-NGGGFDLR--------GRLDGQTIETIEAKKLFRTIAQAAWECADPG 337

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
           + + D  N        G + +SN C+E     +S     CNL S+NL+    A+  F+ +
Sbjct: 338 LQYDDIINDWHTCPETGRITASNPCSEYLHLDNSS----CNLASLNLMKFLRADGGFEVE 393

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K   ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S + 
Sbjct: 394 KFVRSVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQG 453

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----E 735
             +A      ++  A   S ELA   GAY  +  +                 ++      
Sbjct: 454 RSVAAAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDAIKPAGTVA 513

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
            A+ R +   W +  K     G RNS    +APT TI  +    +  ++P    +  K  
Sbjct: 514 TAIQREATKQWTQGNKIGDRYGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKL 573

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---- 850
           + G    + +  V    +   + E  +  +  H    G++   P  LK  H   F+    
Sbjct: 574 VGGGSMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAP-GLKPEHYPVFDCAMG 632

Query: 851 ---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R  
Sbjct: 633 ERSIAPMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDN 692

Query: 907 SATSVEKSTLK 917
                  S  K
Sbjct: 693 CKVGQPLSVAK 703


>gi|213963757|ref|ZP_03392007.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
 gi|213953637|gb|EEB64969.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
          Length = 551

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 171/623 (27%), Positives = 263/623 (42%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E     F  +++      S+P  
Sbjct: 16  QILNRGYLLKG-----ESVEGAIDRITRAAAQRLYKPE-LQPAFKEMITKGWISFSSPIW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 70  ANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRSRGSAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK----DVEFPIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 185 LFFGICVPDYWMQEMIDGD----------------------------------------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    LW ++L    + G P+I F D  N   PQ +     ++ SSNLC+EI L SS +
Sbjct: 204 -VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMIIRSSNLCSEIMLPSSED 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        FD  K    ++ AV  LD V+          + ++ A+  
Sbjct: 263 ESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLSEFIEKTKGNYYLQAARNF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    + ++I   A  A+ ELA   G   
Sbjct: 317 AIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFKYIREEAEKATKELAHIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 377 VLKG------------------------------------------YGRRNTTTMAIAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G VS  I+P   N Y      G+F   N +L   L+++ L +E +   ++ ++
Sbjct: 395 TSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNEDVWRSIRLNN 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
           GS+ +++ +    K +  T  EI PM +I  A++RQ +IDQ QSLNL +      K ++ 
Sbjct: 455 GSVQHLQELTQQEKNVFKTFKEISPMEIISQAAQRQAYIDQTQSLNLNIPSVMPIKDVNK 514

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+K+ YY RS+S   
Sbjct: 515 VMIEAWKLGVKSLYYQRSQSVAK 537


>gi|188995090|ref|YP_001929342.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
 gi|188594770|dbj|BAG33745.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
          Length = 850

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/694 (21%), Positives = 278/694 (40%), Gaps = 101/694 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  Y A+ L Y   F  + L  ++   +Y L    G+  E  P     R+A 
Sbjct: 1   MSRKTYTFDEAYKAS-LAY---FDGDELAAKVWVMKYALKDAQGNIYEKSPVDMHKRIAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIARIEKKYPNPLSEKELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  +               +E           ++I A  LW K++   +++  
Sbjct: 232 YKQQYPIDAKE-------------PKWE-----------KEIDARTLWGKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFTSE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------KAKKS 649
             FD++   + +  A R++D++ID+    IE                        K ++ 
Sbjct: 328 ASFDFELFRNHVVLAQRIMDDIIDLEAEKIEQILSKIDSDPESEEVKTSERNLWHKIRRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+ 
Sbjct: 388 TLAGRRTGVGITAEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F     +   F       +A +R+          PW  L + +K  G RN  C+ IAPT
Sbjct: 448 LFDAKREENNPF-------IARIREA--------DPW--LYEEMKQYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDL 824
            + + +   S  I+P +  +Y  +  ++     V    V+E+    ++  ++    ++ +
Sbjct: 491 GSTSLMTQTSSGIEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWM 550

Query: 825 KYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           + +        +   I+ +        ATA ++D +  ++   R Q+W+D + S+ + L 
Sbjct: 551 RTNGYDPDRKYTNEEIDDLVARSPYYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
               ++L + +Y +AW  G K     R  S + V
Sbjct: 611 SDVTEELVNTLYVEAWKSGCKGCTVYRDGSRSGV 644


>gi|313206312|ref|YP_004045489.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|312445628|gb|ADQ81983.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|315023178|gb|EFT36189.1| ribonucleotide-diphosphate reductase subunit alpha [Riemerella
           anatipestifer RA-YM]
 gi|325336243|gb|ADZ12517.1| Ribonucleotide reductase, alpha subunit [Riemerella anatipestifer
           RA-GD]
          Length = 551

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 172/623 (27%), Positives = 266/623 (42%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q+L   Y L       E       R+    A K   K +    F  ++       S+P  
Sbjct: 16  QMLNRGYLLKG-----ETVHGAIKRI-TTAAAKRLYKPELQPAFEEMIVKGWISFSSPVW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT+     SCF   +PD + GI   + E  M  K  GG    +  +R  G  +   N
Sbjct: 70  ANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELRHRGTAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLTIK----DIGSPIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           + T   +PD +M+ +                                             
Sbjct: 185 LFTGVCVPDYWMQDMIDGD----------------------------------------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
            I    +W K+L    + G P++ F D  N   PQ +      V++SNLC+EI L S+ E
Sbjct: 204 -IDKRKIWAKVLESRQQKGLPYVFFTDNVNRNKPQVYKDKGLLVNASNLCSEIMLPSTQE 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K  + ++ A+  LD V+          + ++ A+  
Sbjct: 263 ESFICCLSSMNL------ELYDEWKDTNAVKLAIYFLDAVLSEFIEKTEGNYYLQGARNF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    + + I   A +AS ELA   G   
Sbjct: 317 AMKHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFKHIKEQAEAASKELANIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           GMRN+  MAIAPT
Sbjct: 377 LLKG------------------------------------------YGMRNTTLMAIAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E    ++  + 
Sbjct: 395 TSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLKKLLEEKGLENEETWRNIMLNH 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
           GS+ +++ + ++ K +  T  EI PM +I  A++RQ++IDQAQSLNL +      K ++F
Sbjct: 455 GSVQHLDGLTEEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIPSTMPVKDVNF 514

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW  G+KT YY RS S + 
Sbjct: 515 LMIEAWKKGIKTLYYQRSSSVSK 537


>gi|34540859|ref|NP_905338.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
 gi|34397173|gb|AAQ66237.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
          Length = 850

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/694 (21%), Positives = 276/694 (39%), Gaps = 101/694 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  Y A+ L Y   F  + L  ++   +Y L    G+  E  P     R+A 
Sbjct: 1   MSRKTYTFDEAYKAS-LAY---FDGDELAAKVWVMKYALKDAQGNIYEKSPMDMHKRIAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIARIEKKYPNPLSEKELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V +   
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +  +               +E           ++I A  LW K++   +++  
Sbjct: 232 YKQQYPIDAKE-------------PKWE-----------KEIDARTLWGKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFTSE 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------KAKKS 649
             FD++   + +  A R++D++ID+    IE                        K ++ 
Sbjct: 328 ASFDFELFRNHVVLAQRIMDDIIDLEAEKIEQILSKIASDPESEEVKTSERNLWHKIRRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+ 
Sbjct: 388 TLAGRRTGVGITAEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F     +   F    I  + E             PW  L + +K  G RN  C+ IAPT
Sbjct: 448 LFDAKREENNPF----IARIREAD-----------PW--LYEEMKQYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDL 824
            + + +   S  I+P +  +Y  +  ++     V    V+E+    ++  ++    ++ +
Sbjct: 491 GSTSLMTQTSSGIEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWM 550

Query: 825 KYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           + +        +   I+ +        ATA ++D +  ++   R Q+W+D + S+ + L 
Sbjct: 551 RTNGYDPDRKYTNEEIDDLVARSPYYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
               ++L + +Y +AW  G K     R  S + V
Sbjct: 611 SDVTEELVNTLYVEAWKSGCKGCTVYRDGSRSGV 644


>gi|312130912|ref|YP_003998252.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Leadbetterella byssophila DSM 17132]
 gi|311907458|gb|ADQ17899.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leadbetterella byssophila DSM 17132]
          Length = 851

 Score =  369 bits (947), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/710 (21%), Positives = 272/710 (38%), Gaps = 112/710 (15%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRI 314
             R IEE  + +   E      L Y          F  + L  ++   +Y L    G+  
Sbjct: 1   MGRIIEETQRQKYTTEEATQAALEY----------FKGDDLAAKVWVTKYALKDSEGNIY 50

Query: 315 E-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQL 368
           E  P+    R+A  +A  E++     +  E  +L+  F ++    S  T   +  +   L
Sbjct: 51  EKSPEDMHHRIASEIARVESKYPSPMKYEEILDLIRDFKYIVPQGSPMTGIGNPFQIASL 110

Query: 369 SSCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           S+CF+   P    D   GI    QE   L K  GG+G+D + +R  G+ +  +   S G+
Sbjct: 111 SNCFVIGHPNGTGDSYGGIMKIDQEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGL 170

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PF++  +++   V Q G R+GA+   +   H D E+F+D +   G    +    N +  
Sbjct: 171 VPFMERYSNSTREVAQDG-RRGALMLSVSINHPDAEDFIDAKLEAG----KITGANVSVR 225

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           I D FMK V   + +T   P                              ++ ++I A  
Sbjct: 226 IDDDFMKAVKNKSAYTQKFP------------------------IFSPNPRMTKEIDAEK 261

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAV 599
           +W+K++   +++  P I F D     S       +     S+N C EI L          
Sbjct: 262 IWQKIVHNAWKSAEPGILFWDTIRRESLPDCYADLGYETVSTNPCGEIPLCPYDSCRLLA 321

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--------------- 644
            NL S  +     +  FD+D     +  A R++D++ID+    I+               
Sbjct: 322 INLYSYVVNPFKKDAYFDFDLFKQHVGAAQRMMDDIIDLELEKIDAILQKIDEDPEDEEI 381

Query: 645 ---------KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                    + +      R  G+G+      L  L I Y   E +  + +  + ++  A 
Sbjct: 382 KRIEKNLWLEIRTKAREGRRTGVGITAEGDMLAALGIRYGREEGIAFSIKVHQTLTLAAY 441

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS E+A+ERGA+S F         F +    +                    L   ++ 
Sbjct: 442 RASCEMAKERGAFSIFDAQREKNNPFLLRIKSVDP-----------------ALYNDLQE 484

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD 814
            G RN   + IAPT + + +   +  I+P +  +Y  +  ++ +   V    V+E+   D
Sbjct: 485 YGRRNIALLTIAPTGSTSILTQTTSGIEPVFMPVYKRRRKVNPNDKNVRVDFVDEVG--D 542

Query: 815 LWDEAMISDLKYHDG------------SIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            W+E ++   K+               S   I+ +        AT+ ++D +  ++    
Sbjct: 543 SWEEYVVFHHKFKTWMEAQGIDTSKNLSDAEIDELIAQSPYYKATSNDVDWVSKVKMQGE 602

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            QKW+D + S+ +   +E + + ++ +Y  AW  G K     R  S + V
Sbjct: 603 IQKWVDHSISVTINIPNEATEELVNELYITAWEAGCKGVTVYRDGSRSGV 652


>gi|296392362|ref|ZP_06881837.1| NrdJa [Pseudomonas aeruginosa PAb1]
          Length = 714

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 264/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 16  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVAGALADVEDKASREHWYGRFLWAL 75

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 76  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDHILEKVHEAGLTLKAGCGIG 134

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 135 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 194

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 195 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 250

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 251 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 310

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 311 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 366

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 367 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 426

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 427 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 486

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 487 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 546

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 547 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 596

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 597 VTPAQHVDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 655

Query: 909 T 909
            
Sbjct: 656 A 656


>gi|256820789|ref|YP_003142068.1| ribonucleotide-diphosphate reductase subunit alpha [Capnocytophaga
           ochracea DSM 7271]
 gi|315223932|ref|ZP_07865777.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256582372|gb|ACU93507.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           ochracea DSM 7271]
 gi|314946104|gb|EFS98108.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 551

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 168/624 (26%), Positives = 261/624 (41%), Gaps = 114/624 (18%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRV-AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           QIL   Y L       E  +    R+ +         + + A +   +++      S+P 
Sbjct: 16  QILNRGYLLKG-----ESVEGAIDRITSAAAHRLYKPELQPAFK--EMITKGWISFSSPI 68

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
             N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G+ +   
Sbjct: 69  WANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRSRGSAVTD- 127

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL ++    D      
Sbjct: 128 NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK----DVEFPIQ 183

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           ++     +PD +M+ +                                            
Sbjct: 184 NLFFGICVPDYWMQEMIDGD---------------------------------------- 203

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSS 594
             +    LW ++L    + G P+I F D  N   PQ +      + SSNLC+EI L SS 
Sbjct: 204 --VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMLIRSSNLCSEIMLPSSE 261

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKK 648
           +E+ +C L S+NL        FD  K    ++ AV  LD V+          + ++ A+ 
Sbjct: 262 DESFICCLSSMNL------ELFDEWKDTKAVKLAVFFLDAVLSEFIEKTKGNYYLQAARN 315

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
               HRA+GLG++G+ S L    IP+ S EA +    +  +I   A  A+ ELA   G  
Sbjct: 316 FAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFRYIREEADKATKELAHIYGEP 375

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
              KG                                           G RN+  MAIAP
Sbjct: 376 EILKG------------------------------------------YGRRNTTTMAIAP 393

Query: 769 TATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T + + I G VS  I+P   N Y      G+F   N +L   L+++ L +E +   ++ +
Sbjct: 394 TTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNEEVWRSIRLN 453

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLD 886
           +GS+ +++ +    K +  T  EI PM +I  A++RQ +IDQ QSLNL +      + ++
Sbjct: 454 NGSVQHLQELSQLEKNVFKTFKEISPMEIISQAAQRQAYIDQTQSLNLNIPSAMPIRDVN 513

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            +  +AW +G+K+ YY RS+S   
Sbjct: 514 KVLIEAWKLGVKSLYYQRSQSVAK 537


>gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 945

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/698 (21%), Positives = 257/698 (36%), Gaps = 56/698 (8%)

Query: 282 ANDLKYE-RDFAF----EYLGLQILYDRYFLHINGSRIEMPQ------AFFMRV------ 324
              + +E RD  F          I+  +YF       +  PQ          RV      
Sbjct: 51  DGSINFEQRDVEFPVSWSVNAANIVTTKYFR----GAVGTPQREWSLKQLIDRVVGVYTR 106

Query: 325 -AM--GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDL 380
            A+  G    E + E    E  + L +  F  ++P  FN GT  PQ +S+CF+  V D +
Sbjct: 107 TAVEHGYFAGEEDAEIFDHELKHALVNQVFSFNSPVWFNVGTASPQQVSACFILAVDDQM 166

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  
Sbjct: 167 ESILDWYKEEGVIFKGGSGSGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKS 225

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G   R+ A    L+  H D+EEF++ +    D  R   D   A +  DL  K +      
Sbjct: 226 GGATRRAAKMVVLDVDHPDIEEFIETKAREEDKVRALRD---AGFDMDLGGKDIVSVQYQ 282

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETG 557
              +   VSD       EF  A E  E    R     +V  K+ A  L+RKM T  +E  
Sbjct: 283 NANNSVRVSD-------EFMRAVEKGEEFGLRARLTGEVIEKVDAGRLFRKMATAAWECA 335

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616
            P + + D  N        G + +SN C+E     +S     CNL SINL+    + N F
Sbjct: 336 DPGVQYDDTINDWHTSPETGRITASNPCSEYLHLDNSS----CNLASINLMKFLKDDNSF 391

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +         +  +D  I       EK  ++   +R +G+G     + L      Y S
Sbjct: 392 DIESFVKITELIITAMDVSITFADFPTEKIDQTTRAYRQLGIGYANLGALLMATGHAYDS 451

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
                IA      ++  +   S ELA   G Y  +  +                ++R   
Sbjct: 452 EGGRAIAGAVTSLMTGASYRRSAELAAVVGPYDGYARNADAHKRVMRKHAAANDDLRTLE 511

Query: 737 AMNRTSRLP----WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYV 791
            M++         W E  K  +  G RN+    +APT TI  +    +  I+P    +  
Sbjct: 512 GMDKAIHAEASRQWTECLKLGERNGYRNAQASLLAPTGTIGLMMDCDTTGIEPDLALVKF 571

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATA 848
           K  + G    + +  +    ++  + E  +  +  +  S  ++   P    +  ++   A
Sbjct: 572 KKLVGGGSMQIVNQTIPRALRQLGYPEEQVEAIVEYIASNSHVVDAPGLKPEHYEVFDCA 631

Query: 849 F---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
                I PM  +   +  Q ++  A S  + L E  + + ++ +Y + W +GLK     R
Sbjct: 632 MGERAIAPMGHVRMMAAAQPFLSGAISKTVNLPEAATVEDIEQVYMEGWKLGLKALAVYR 691

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                    S       K       +P      +  P+
Sbjct: 692 DNCKVGQPLSVAGKKSDKKTEEKAAEPEIQVVEISRPT 729


>gi|295690403|ref|YP_003594096.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295432306|gb|ADG11478.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter segnis ATCC 21756]
          Length = 747

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/651 (23%), Positives = 254/651 (39%), Gaps = 91/651 (13%)

Query: 296 LGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
           L  +I   +Y F    G      +  + RVA  +A  E  + + A    F + L  F FM
Sbjct: 7   LAAEIWAAKYRFAPDAGDGDVTVEDSWRRVAEAIAQAEPAEAREAWREKFLDALGDFQFM 66

Query: 353 CSTPTLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +      +GT     L +CF + T+PDDL GIF  L+E A+  +  GG+G D++ +R  
Sbjct: 67  PAGRIFAGAGTGRAVTLFNCFVMGTLPDDLPGIFEHLREAAVTLQQGGGVGMDFSTIRPS 126

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G    + G + F+ V +     +   G+R+GA+   L   H D+E F+D ++   
Sbjct: 127 GAPVRGVGADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR--- 183

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  + N +  + D F++ +  +A W L           ++G E             
Sbjct: 184 -EPTRLRNFNLSVLVTDAFLEALAADADWPL-----------VFGGE------------- 218

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                VF+ + A  LWR+++T  +    P + F D  N R+       + +SN C E  L
Sbjct: 219 -----VFKTVRASDLWRRLMTATYAYAEPGVIFVDRVNARNNLADCETICASNPCGEQML 273

Query: 591 NSSSEETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                    C LGSINL              D +KLA     A+R LD+VID++   +E 
Sbjct: 274 PP----YGACLLGSINLARLVAAPFTEGAVLDEEKLAELTHVAIRFLDDVIDVSRFPLEA 329

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +     R +GLG+ G   AL      Y S EA +     +  I   A  AS  LA E+
Sbjct: 330 QAEEARAKRRLGLGVTGLADALIFCGQRYGSQEAAQTIKRWLGIIKREAYRASAALAAEK 389

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  +                 + +  + L ++       D+ +  +   G+RN    +
Sbjct: 390 GPYPLWD--------------PRVLDRPNLLELD-------DDTRALIAKHGLRNGCLTS 428

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT T + + G  S  ++P +   Y +     D                   +  + D 
Sbjct: 429 IAPTGTTSLVAGNVSSGVEPVFAYAYSRKVRQPD---------------GSTRQEAVEDY 473

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
                   + E  P     +  +A  + P   +   +  Q  ID + S  +      +  
Sbjct: 474 ALTVWKRLHGETEPP--ADVFVSAQTLTPREHLVMQAAAQSMIDSSISKTVNCPADIAFD 531

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
               +Y + W MG K     R  + T     ++  VD      P + P ++
Sbjct: 532 AFCDVYLEGWRMGCKGLTTYRPNAVTG----SVLSVDTPPAEPPASTPEAT 578


>gi|313111562|ref|ZP_07797361.1| NrdJa [Pseudomonas aeruginosa 39016]
 gi|310883863|gb|EFQ42457.1| NrdJa [Pseudomonas aeruginosa 39016]
          Length = 734

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/661 (23%), Positives = 261/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 36  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 95

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 96  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIG 154

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 155 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 214

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 215 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 270

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+ I  +  +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 271 VWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 330

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 331 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 386

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +E+ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 387 TRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 446

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D       +R  +   + 
Sbjct: 447 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKY 506

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 507 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 566

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R          +  +  ++ + +     L     TA  
Sbjct: 567 LIREGRKTKEKVEVYSYELLAYR----------ILVNAQALPDSDDPARRLPDYFITADS 616

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 617 VTPAQHVDIQAAAQKWGDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 675

Query: 909 T 909
            
Sbjct: 676 A 676


>gi|152985283|ref|YP_001351609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
 gi|150960441|gb|ABR82466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
          Length = 714

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/661 (23%), Positives = 263/661 (39%), Gaps = 62/661 (9%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
            A +     I   +Y L   +G+ ++      + RVA  LA  E +  +E     F   L
Sbjct: 16  IALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWAL 75

Query: 347 SSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +     +   + N+G    +      +     T+ D +  I   + E  +  K   G+G
Sbjct: 76  RNGAI-PAGRIISNAGALGHKPATSTINCTVSGTIQDSMDDILEKVHEAGLTLKAGCGIG 134

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H DV E
Sbjct: 135 YEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVRE 194

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-----DLHD---L 513
           F+  ++  G    R    N +  I D FM+ V Q+A W L  P  V      DL D   +
Sbjct: 195 FIRAKREDG----RLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAV 250

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             +E+       +R       KV+ ++ A  LW  ++   ++   P     D  N  +  
Sbjct: 251 VWREWPTQDNYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNN 310

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL            +FD+D+    +R  
Sbjct: 311 WWCEAIRATNPCGEQPLPPYGS----CLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVF 366

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +++ ++     R  G+G +G  S L LL + Y SPEA    +E   
Sbjct: 367 TRMLDNVVEINGLPLQQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAR 426

Query: 689 FISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G        Y      L  +     D   +   +R  +   + 
Sbjct: 427 EMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKVGDRIRGSVLHAKY 486

Query: 742 SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 487 SRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 546

Query: 794 NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V  +    L  R L +   + D      S     R+PD       TA  
Sbjct: 547 LIREGRKTKEKVEVYSYELLAYRTLVNAQALPD------SDDPARRLPD----YFITADS 596

Query: 851 IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + P   ++  +  QKW+D + S   N+  D P  +    IYR AW  GLK     R    
Sbjct: 597 VTPAQHVDIQAAAQKWVDSSISKTANVPTDYP-FEDFKDIYRYAWHQGLKGCTTFRFNPE 655

Query: 909 T 909
            
Sbjct: 656 A 656


>gi|262384874|ref|ZP_06078006.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293590|gb|EEY81526.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 855

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/710 (20%), Positives = 271/710 (38%), Gaps = 101/710 (14%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFF 321
           +   ++      FD  + A+ L Y   F  + L  ++  ++Y L    G+  E  P    
Sbjct: 5   INIIIVDRKTYTFDEAFKAS-LDY---FTGDELAAKVWVNKYALKDAFGNIYEESPNDMH 60

Query: 322 MRVAMGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV 376
            R+A  +A  E +        E ++L   F ++    S  T   +  +   LS+CF+  +
Sbjct: 61  HRLASEIARVEKKYPNPLSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGL 120

Query: 377 P---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  ++
Sbjct: 121 DGQADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSN 180

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM   
Sbjct: 181 STREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDDFMNAA 235

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
                +    P +                               + I A  LW+K++   
Sbjct: 236 VNGGTYKQQYPID------------------------SDSPVYVKDIDASGLWKKIIHNA 271

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +++  P + F D     S       +    + T             C L +INL ++  N
Sbjct: 272 WKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVN 331

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIE 644
                  FDYD     +  A R++D++ID                           H  E
Sbjct: 332 PFTPDAYFDYDLFKKHVGLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWE 391

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K ++     R  G+G+      +  L + Y + EA + A+   + ++  A  +SV LA+E
Sbjct: 392 KIQRKTLQGRRTGVGITAEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKE 451

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+  F     ++  F    I  L E                 L + +   G RN  C+
Sbjct: 452 RGAFEIFDAKREEKNPF----INRLREADP-------------ALYEDMLKYGRRNIACL 494

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEA 819
            IAPT T + +   +  I+P +  +Y  +  ++ + +      V+E     ++  ++   
Sbjct: 495 TIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDSEARVDFVDETGDAFEEYIVFHHK 554

Query: 820 MISDLKYHDGS------IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            ++ ++ +  S         +E +        AT+ ++D +  +    R QKW+D + S+
Sbjct: 555 FVTWMQANGYSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISV 614

Query: 874 NLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            + L     ++L D +Y +AW  G K     R  S + V  +T K    +
Sbjct: 615 TINLPNDVSEELVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKKE 664


>gi|333024021|ref|ZP_08452085.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
 gi|332743873|gb|EGJ74314.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
          Length = 921

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 136/639 (21%), Positives = 245/639 (38%), Gaps = 44/639 (6%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  Q F             + E    E    L    F  ++P
Sbjct: 56  GLKQLIDR-IVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSFNSP 105

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 106 VWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 164

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +  R
Sbjct: 165 TSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEEKIR 224

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK              R  
Sbjct: 225 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGKFG---------LRSRLT 275

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 276 GEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMHLDN 335

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       EK  +
Sbjct: 336 TS----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKIGE 391

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 392 NTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVGPY 451

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+ G+   + D +  +   +   W ++ +  +  G RN+   
Sbjct: 452 EGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQAS 511

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 512 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 571

Query: 824 LKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +  H   +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  + +
Sbjct: 572 IVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTVNM 631

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            E  + ++++ IY +AW +G+K     R         S 
Sbjct: 632 PESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSA 670


>gi|318059580|ref|ZP_07978303.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actG]
 gi|318075430|ref|ZP_07982762.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actF]
          Length = 959

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 136/639 (21%), Positives = 245/639 (38%), Gaps = 44/639 (6%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  Q F             + E    E    L    F  ++P
Sbjct: 94  GLKQLIDR-IVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSFNSP 143

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 144 VWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 202

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +  R
Sbjct: 203 TSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEEKIR 262

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK              R  
Sbjct: 263 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGKFG---------LRSRLT 313

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 314 GEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMHLDN 373

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       EK  +
Sbjct: 374 TS----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKIGE 429

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 430 NTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVGPY 489

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+ G+   + D +  +   +   W ++ +  +  G RN+   
Sbjct: 490 EGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQAS 549

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 550 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 609

Query: 824 LKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +  H   +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  + +
Sbjct: 610 IVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTVNM 669

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            E  + ++++ IY +AW +G+K     R         S 
Sbjct: 670 PESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSA 708


>gi|302522306|ref|ZP_07274648.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
 gi|302431201|gb|EFL03017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
          Length = 965

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 136/639 (21%), Positives = 245/639 (38%), Gaps = 44/639 (6%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  Q F             + E    E    L    F  ++P
Sbjct: 100 GLKQLIDR-IVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSFNSP 149

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 150 VWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 208

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +  R
Sbjct: 209 TSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEEKIR 268

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK              R  
Sbjct: 269 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVETAGKFG---------LRSRLT 319

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 320 GEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMHLDN 379

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       EK  +
Sbjct: 380 TS----CNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKIGE 435

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 436 NTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVGPY 495

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+ G+   + D +  +   +   W ++ +  +  G RN+   
Sbjct: 496 EGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQAS 555

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 556 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 615

Query: 824 LKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +  H   +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  + +
Sbjct: 616 IVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTVNM 675

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            E  + ++++ IY +AW +G+K     R         S 
Sbjct: 676 PESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSA 714


>gi|254785736|ref|YP_003073165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
 gi|237684341|gb|ACR11605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
          Length = 719

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 138/659 (20%), Positives = 257/659 (38%), Gaps = 67/659 (10%)

Query: 293 FEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSF 349
            +     I   +Y L  +      E   A   RVA  L+  E  ++     EF   L + 
Sbjct: 28  LQAASEDIWDKKYRLKDSHGTPVDESIHATRKRVAKALSSVEKSKRAHWEKEFIWALDNG 87

Query: 350 HFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               +   + N+G +        ++     T+ D ++GI     E  +  K   G+G ++
Sbjct: 88  AI-PAGRIISNAGAQEYKPATSTINCTVSGTINDSMHGILEKNLEAGLTLKAGCGIGYEF 146

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV++F+ 
Sbjct: 147 STLRPKGAYVSGAGAYTSGPLSFMDIFDKMCFTVSSAGGRRGAQMATFDVHHPDVQDFIR 206

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHD---LY 514
            ++  G    +    N +  I D F++ V ++  W L  P        +  DL+D   + 
Sbjct: 207 AKREDG----KLRQFNLSLLITDDFIRAVKEDTDWALSFPLSQRDMEHKPVDLNDSTQVV 262

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            +      +    +      ++++ I A  LW ++++  ++   P     D  N ++   
Sbjct: 263 WRRVPAKDKYITNEEGLTACRIYKSIPAKRLWNQIMSSTYDFAEPGFILIDRVNDQNNNW 322

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL          N +F+++K    +    
Sbjct: 323 FCENIRATNPCGEQPLPPYGS----CLLGSVNLTVFVEEPFTENARFNWEKYRKVVAIFT 378

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   +E+ +      R  G+G +G  S L LL IPY S  ++   ++    
Sbjct: 379 RMLDNVVEINGLALEQQRDEITRKRRHGMGFLGLGSTLALLRIPYGSSASIAFTEQVSRE 438

Query: 690 ISFHAISASVELAQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++       + LA+E+G   +        +  L  +     D +    +V+  +  +R S
Sbjct: 439 LAITGWREGLSLAKEKGMAPALADEYDVTEAMLRMRPAMAADGLKAGDKVKGSVLFSRYS 498

Query: 743 RLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVK-- 792
                      +L   +   G R ++  +IAPT TI+       S  I+PS+ + Y +  
Sbjct: 499 NYMSKLAEEDPQLLADLAEHGCRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNI 558

Query: 793 -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                     V+ F    L  R L        +    G        P DL +   +A  +
Sbjct: 559 IREGKKSKEKVDVFSYELLAYRHL--------IDAEAG--------PSDLPEYFVSADSV 602

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            P   ++  +  QKW+D + S  + +    S +    IY  A+  GLK     R     
Sbjct: 603 APSQHVDVQAAAQKWVDSSISKTINVPTNISYEAFKDIYLYAYDQGLKGCTTFRFNPEA 661


>gi|315502612|ref|YP_004081499.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
 gi|315409231|gb|ADU07348.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
          Length = 964

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 137/642 (21%), Positives = 240/642 (37%), Gaps = 46/642 (7%)

Query: 306 FLHINGSRIEMPQAFFMRVAM---GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
              +    +E       R A    G      + E  A E   +L    F  ++P  FN G
Sbjct: 97  LRQLIDRVVETY-----RTAGEEYGYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVG 151

Query: 363 TRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQ +S+CF+ +V D +  I    +E   + +   G G + + +R     +  + G +
Sbjct: 152 TPSPQQVSACFILSVDDSMDSILDWYKEEGRIFQGGSGAGVNLSRIRSS-KELLSSGGTA 210

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G + F++ A+ +A  +  G   R+ A    L+  H D+EEF+  +    D  R   D  
Sbjct: 211 SGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVATKAREEDKIRALRD-- 268

Query: 481 TANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            A +  DL    +     QNA  ++   DE     +  G  F++          R + + 
Sbjct: 269 -AGFDMDLGGADIVSVQYQNANNSVRVSDEFMTAVE-NGGGFDLR--------GRLDGQT 318

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
              I A  L+  +    +E   P + + D  N        G + +SN C+E     +S  
Sbjct: 319 IETIDAKKLFHTISQAAWECADPGLQYDDTINDWHTCPETGRITASNPCSEYLHLDNSS- 377

Query: 597 TAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNL S+NL+    A+  F+ +K   ++   +  +D  I       EK  ++   +R 
Sbjct: 378 ---CNLASLNLMKFLRADGGFEVEKFVKSVEFVITAMDISICFADFPTEKIGETTRAYRQ 434

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G     + L    +PY S +  E++      ++  A   S ELA   G Y  +  + 
Sbjct: 435 LGIGYANLGALLMASGLPYDSEQGREVSAAITSLMTGTAYRRSAELAGIVGPYDGYARNA 494

Query: 716 WDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                           ++       A+ R +   W    K     G RNS    +APT T
Sbjct: 495 EPHKRVMRKHAAANDAIKPTGTVATAVQREATKQWTLGNKLGDKFGWRNSQASVLAPTGT 554

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I  +    +  ++P    +  K  + G    + +  V    +   + E  +  +  H   
Sbjct: 555 IGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTVPRALRSLGYPEEQVEAIVEHIAD 614

Query: 831 IGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
            G++   P  LK  H   F+       I PM  +   +  Q +I  A S  + + E  + 
Sbjct: 615 HGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRMMAAVQPFISGAISKTVNMPEQATV 673

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           + ++ IY + W +GLK     R         S  K       
Sbjct: 674 EDVEKIYFEGWKLGLKALAIYRDNCKVGQPLSAAKPNKATAE 715


>gi|120554013|ref|YP_958364.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
 gi|120323862|gb|ABM18177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
          Length = 712

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 146/660 (22%), Positives = 262/660 (39%), Gaps = 64/660 (9%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
           +   L I   +Y L    G  ++    A + RVA  LA  E +  ++K   EF   L + 
Sbjct: 15  QEASLDIWSSKYQLKTKTGEPVDKDINATYERVAKALAEVEKKNLRDKYMKEFLWALQNG 74

Query: 350 HFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               +     N+G          ++     T+ D +  I     E  +  K   G+G ++
Sbjct: 75  AI-PAGRITSNAGAEAHKPATSTINCTVSGTIQDSMNDILEKNHEAGLTLKAGCGIGYEF 133

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV EF+ 
Sbjct: 134 STLRPRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVHHPDVIEFIQ 193

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHDL---Y 514
            ++  G    R    N +  I + F++ V     W L  P       DE  DL D     
Sbjct: 194 AKREDG----RLRQFNLSLLITEDFIEAVRNGDDWHLSFPVTQKEADDEGLDLTDASQFV 249

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            ++F +          +   ++++ + A  +W  ++T  ++   P     D  N  +   
Sbjct: 250 YRDFPVQEGYVVNNEGKVACRIYKTVKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNW 309

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL             F+Y+K    + T  
Sbjct: 310 FCEDIRATNPCGEQPLPPYGS----CLLGSVNLTKFVEYPFTEKASFNYEKYRKVVGTFT 365

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   + + +      R  G+G++G  S L +L +PY S E+V+  +E +  
Sbjct: 366 RMLDNVVEINGLPLGEQRHEITYKRRHGMGILGLGSTLAMLRMPYGSDESVKFTEEVVRE 425

Query: 690 ISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++      S+ LA+E+G        F+     +        D I +  +V+ ++   + S
Sbjct: 426 MAVEGWRQSLALAEEKGPAPIMDDEFEVTPKMMTKCPKLAEDGIKVGDKVKGKVLHAKYS 485

Query: 743 RLP------WDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
                      EL  ++   G R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 486 AYMGRIAEVEPELVAKLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNI 545

Query: 795 MSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ F    L  R L           + G++   E     L     T+ ++
Sbjct: 546 IREGRKTKEKVDVFSFELLAYRHL----------VNPGAMPFSEDEDKKLPSYFTTSDDV 595

Query: 852 DPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            P   ++  +  QKW+D + S   N+  + P  +    IY  A+  GLK     R     
Sbjct: 596 TPTQHVDIQAAAQKWVDSSISKTANVPTEFPY-QDFKDIYLYAYDKGLKGCTTFRFNPEA 654


>gi|296270389|ref|YP_003653021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
 gi|296093176|gb|ADG89128.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
          Length = 938

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 140/640 (21%), Positives = 249/640 (38%), Gaps = 37/640 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    E + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 116 GYFATEEDAEIFDHELKYALIHQIFSFNSPVWFNVGTASPQQVSACFILSVDDTMESILE 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGLIFKGGSGAGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF+   ++   + ++   +  A +  DL  + +         + 
Sbjct: 235 RAAKMVVLDVDHPDIVEFI---ESKAREEQKIRVLRDAGFDMDLGGRDIVSVQYQNANNS 291

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWIT 562
             VSD       EF  A EN  +   R     +V  ++ A  L+RKM    +E G P I 
Sbjct: 292 VRVSD-------EFMRAVENGGKFGLRARLTGEVIEEVDARELFRKMAQAAWECGDPGIQ 344

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKL 621
           + D  N        G + +SN C+E     +S     CNL SINL+    ++  FD +  
Sbjct: 345 YDDTINDWHTCPESGRITASNPCSEYVHLDNSS----CNLASINLMKFLRDDDTFDVESF 400

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       +K  ++    R +G+G     + L      Y S     
Sbjct: 401 TKMVELIITAMDISITFADFPTQKIAETTRAFRQLGIGYANLGALLMATGHAYDSDGGRA 460

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELA 737
           +A      ++  A   S ELA+  G Y  ++ +           +    ++R     + A
Sbjct: 461 LAAAITSLMTAVAYRRSAELAEVVGPYQGYQRNAEPHKRVIRKHVAANTQLRTYEAMDSA 520

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMS 796
           ++  +   WD   K  +  G RN+    +APT TI  +    +  I+P    + +K  + 
Sbjct: 521 IHAEATRQWDRCVKLGEKHGYRNAQVSLLAPTGTIGLMMDCDTTGIEPDLALVKIKKLVG 580

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------ 850
           G    + +  V    ++  + +  I  +  +    G++   P  LK  H   F+      
Sbjct: 581 GGSMKIVNQTVPRALRKLGYQDEQIEAIVEYISEHGHVVDAP-GLKPEHYAVFDCAMGER 639

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + L E  + + ++ +Y   W +GLK     R    
Sbjct: 640 AIAPMGHVRMMAAVQPFLSGAISKTVNLPESATVEDIEQVYMAGWKLGLKALAVYRDNCK 699

Query: 909 TSVEKSTLK---GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                S  K       ++  V V  P         PS+ T
Sbjct: 700 VGQPLSAAKKQPESKPEVQIVEVPRPQRRRLPNQRPSTTT 739


>gi|331695964|ref|YP_004332203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950653|gb|AEA24350.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
          Length = 954

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 134/636 (21%), Positives = 233/636 (36%), Gaps = 39/636 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + E  A E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 127 GYFATDEDAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDTMESILN 186

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 187 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+   +    +  +   +  A +  DL    +T    QNA  +
Sbjct: 246 RAAKMVVLDVDHPDIEEFV---ETKAKEEAKVRVLRDAGFDMDLGGADITSVQYQNANNS 302

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGH 558
           +   DE           F  A E       RG +   V   + A  L+R +    +E   
Sbjct: 303 VRVTDE-----------FMRAVEEGTSFGLRGRMTGEVIDSVDARTLFRGIAQAAWECAD 351

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFD 617
           P I +    N        G + +SN C+E     +S     CNL S+NLL    +   FD
Sbjct: 352 PGIQYDGTINDWHTTPESGRITASNPCSEYMHLDNSS----CNLASLNLLTFLGDDGMFD 407

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++    +   +  +D  I       E    +    R +G+G     + L      Y S 
Sbjct: 408 AERFRRAVEFIITAMDISICFADFPTEPIGDTTRKFRQLGIGYANLGALLMATGHAYDSE 467

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
               +A      ++  A   S ELA   G Y  +  +                +VR   A
Sbjct: 468 GGRALAASITSLMTGAAYKRSAELAGVVGPYEGYARNAEGHQRVMRKHAAANDDVRTLAA 527

Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS 793
              ++R + + W E     +  G RN+    +APT TI  +    +  I+P    +  K 
Sbjct: 528 STHIHRLATITWKECLAIGERNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKK 587

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAF- 849
            + G    + +  V    Q+  +       +  +    G++   P    +  ++   A  
Sbjct: 588 LVGGGSMQIVNQTVPRALQKLGYQAEQAEAIVEYVAEHGHVIDAPGLRTEHYEVFDCAMG 647

Query: 850 --EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I PM  +   +  Q ++  A S  + + E  S + ++ IY + W +GLK     R  
Sbjct: 648 ERSIAPMGHVRMMAAVQPFLSGAISKTVNMPEAASVEDVERIYMEGWKLGLKALAIYRDN 707

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                  S  K      +A              +P 
Sbjct: 708 CKVGQPLSAGKEARKDASADAEAPVEYRPVRRRLPK 743


>gi|325103986|ref|YP_004273640.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
 gi|324972834|gb|ADY51818.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
          Length = 548

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 170/623 (27%), Positives = 263/623 (42%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E PQ    R+A   A +  + E  A  F  ++S      S+P  
Sbjct: 13  QILNRGYLLKG-----ETPQKAIERIANAAAKRLYKPE-LAESFIEMISKGWMSLSSPIW 66

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G  +   N
Sbjct: 67  ANMGTERGLPISCFNVHVPDHIEGITHKLGEVIMQTKTGGGTSGYFGELRARGTAVTD-N 125

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D++EFLD++           +
Sbjct: 126 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIKEFLDIKNIGNP----IQN 181

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ + +                            + E+           
Sbjct: 182 LFFGVCVPDYWMQDMIEG---------------------------DREK----------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
                 +W K+L    + G P+I F D  N   P  +      +++SNLC+EI L SS +
Sbjct: 204 ----RDVWAKVLECRQQKGLPYIFFSDNVNRFKPDVYKDKEMPIYASNLCSEIALPSSRD 259

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ VC L S+NL        +D  K    +R A   LD V+          H ++ A   
Sbjct: 260 ESFVCCLSSMNL------ELYDEWKDTGAVRLATFFLDAVMSEFIEKTEGNHYLQSANNF 313

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG+MG+ S L    I + S +A ++ +   + +   ++ AS ELA   G  S
Sbjct: 314 AKNHRALGLGVMGWHSYLQKNMIAFESLQAKQLTNTIFKDLQEKSLKASEELANIYGEPS 373

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  +A+APT
Sbjct: 374 LLKG------------------------------------------YGRRNATLLAVAPT 391

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ + +E     +  + 
Sbjct: 392 TSSSAILGQTSPGIEPYSSNYYKAGLAKGNFIRKNKYLRALLEEKGIDNEETWRTIMLNH 451

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
           GS+ ++  +  + K I  T  E+    +I  AS RQK+IDQAQSLN+ +      K ++ 
Sbjct: 452 GSVQHLTELTQEEKDIFKTFKELSQYEIILQASIRQKYIDQAQSLNINIPSNLPIKDVNN 511

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+KT YY RS+S + 
Sbjct: 512 LIIEAWKLGVKTLYYQRSQSVSK 534


>gi|302866053|ref|YP_003834690.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
 gi|302568912|gb|ADL45114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
          Length = 964

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 137/642 (21%), Positives = 240/642 (37%), Gaps = 46/642 (7%)

Query: 306 FLHINGSRIEMPQAFFMRVAM---GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
              +    +E       R A    G      + E  A E   +L    F  ++P  FN G
Sbjct: 97  LRQLIDRVVETY-----RTAGEEYGYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVG 151

Query: 363 TRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQ +S+CF+ +V D +  I    +E   + +   G G + + +R     +  + G +
Sbjct: 152 TPSPQQVSACFILSVDDSMDSILDWYKEEGRIFQGGSGAGVNLSRIRSS-KELLSSGGTA 210

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G + F++ A+ +A  +  G   R+ A    L+  H D+EEF+  +    D  R   D  
Sbjct: 211 SGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFVATKAREEDKIRALRD-- 268

Query: 481 TANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            A +  DL    +     QNA  ++   DE     +  G  F++          R + + 
Sbjct: 269 -AGFDMDLGGADIVSVQYQNANNSVRVSDEFMTAVE-NGGGFDLR--------GRLDGQT 318

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
              I A  L+  +    +E   P + + D  N        G + +SN C+E     +S  
Sbjct: 319 IETIDAKKLFHTISQAAWECADPGLQYDDTINDWHTCPETGRITASNPCSEYLHLDNSS- 377

Query: 597 TAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNL S+NL+    A+  F+ +K   ++   +  +D  I       EK  ++   +R 
Sbjct: 378 ---CNLASLNLMKFLRADGGFEVEKFVKSVEFVITAMDISICFADFPTEKIGETTRAYRQ 434

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G     + L    +PY S +  E++      ++  A   S ELA   G Y  +  + 
Sbjct: 435 LGIGYANLGALLMASGLPYDSEQGREVSAAITSLMTGTAYRRSAELAGIVGPYDGYARNA 494

Query: 716 WDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                           ++       A+ R +   W    K     G RNS    +APT T
Sbjct: 495 EPHKRVMRKHAAANDAIKATGTVATAVQREATKQWTLGNKLGDKFGWRNSQASVLAPTGT 554

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I  +    +  ++P    +  K  + G    + +  V    +   + E  +  +  H   
Sbjct: 555 IGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTVPRALRSLGYPEEQVEAIVEHIAD 614

Query: 831 IGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
            G++   P  LK  H   F+       I PM  +   +  Q +I  A S  + + E  + 
Sbjct: 615 HGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRMMAAVQPFISGAISKTVNMPEQATV 673

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           + ++ IY + W +GLK     R         S  K       
Sbjct: 674 EDVEKIYFEGWKLGLKALAIYRDNCKVGQPLSAAKPNKATAE 715


>gi|66957898|gb|AAQ73541.2| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 796

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 175/701 (24%), Positives = 285/701 (40%), Gaps = 77/701 (10%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA-------- 329
           L    + L Y +      +      D Y         E    FF R+A  +A        
Sbjct: 109 LTNFYSGLAYYKIKTLGLMSAMKYEDFYLTKFQNGTHESIGQFFTRIAATVATHIHRDMP 168

Query: 330 -------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD--DL 380
                  + E         F+NLLS    +  TP +   G ++  L+SC+L   P    L
Sbjct: 169 QYGLLIPMMERSWFNYFDYFFNLLSHNIIIPPTPAMLFMGRKNRSLASCYLLDPPQKTTL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +    Q+   +  + GG+G +         +     G+  G +   K+ +   +  N 
Sbjct: 229 EAMSAVAQDIIPILNHRGGIGINVND-----YNQTPREGRKLGFLGLAKLIDTCVLLSNS 283

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG- 498
             +R   VC ++E W+ DVE FL ++  T  +   R  ++  A WIPDLFMKR   +   
Sbjct: 284 DSERPTGVCMFMEPWNADVESFLGIKGLTTLEHHLRCDNIFNALWIPDLFMKRYMADPNT 343

Query: 499 -WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF  D  + L  LYGKEFE  Y   E           R++    L  K++     TG
Sbjct: 344 TWSLFD-DRCNHLAKLYGKEFEDEYHRLETAGM-----AVRQMPIKELLFKIIRSAIMTG 397

Query: 558 HPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
            P+I FKD CN        G  +  SNLCTEI  ++  +   VCNL ++NL A       
Sbjct: 398 SPFIMFKDSCNRHYYMDTQGQAIRGSNLCTEIIHHTEPDSDGVCNLMNVNLPAFLTLSFN 457

Query: 613 -----------------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                                  +  F+++KL   +  A   ++ +ID + H   K +  
Sbjct: 458 KETYCLSDDTLWQEHNKFCTPGGHRYFNFEKLTEAVTAATIFINVMIDRSVHPTTKTQNG 517

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708
               R++G+G  G  +   +L     +P+A ++     E +   A  AS EL Q     +
Sbjct: 518 AKNFRSMGIGFQGLNTLCWILGETLVTPKARKLGKTICEAMYLSAAEASNELCQLGLSPF 577

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F  S + +G+   D+   +  +        T +  W  L+ ++   G+ NS  +A+ P
Sbjct: 578 KRFSESRYARGIMHFDAWDNVGSL--------TFQDRWSALRPKIIKYGLYNSQFIALMP 629

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--RDLWDEAMISDLKY 826
           T + + I   S++  P + NLY K +++G+    N  L+ +L    +       +  L+ 
Sbjct: 630 TVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPNVMLLRDLGSVFKGKDYTDALEKLER 689

Query: 827 HDGSIGN-IERIP-DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE----P 880
           H   +G     +P D   + + TAFE D   L+E  + R  ++D +QS  LY  E     
Sbjct: 690 HKWVVGEAFPDLPTDHAIRKYLTAFEYDQNTLLELTADRAPFVDHSQSNTLYFLEGKTPI 749

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           S K +      A+ +GLKT  YY R + AT        G +
Sbjct: 750 SAKYIMNHLVTAYKLGLKTGMYYCRIKKATDASIFMCAGQE 790


>gi|291006953|ref|ZP_06564926.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 943

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 141/677 (20%), Positives = 246/677 (36%), Gaps = 47/677 (6%)

Query: 296 LGLQILYDRYFLH--INGSRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYN 344
             + I+  +YF     +  R    +    RV           G    E + E    E   
Sbjct: 70  NAVNIVTSKYFRGAVGSDKRENSLRQLIDRVVKTYVRNGVEHGYFATEADAEIFEHELTW 129

Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G G +
Sbjct: 130 MLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMESILNWYKEEGLIFKGGSGAGLN 189

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF
Sbjct: 190 LSRIRSSR-ELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEF 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFM----KRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +   +    +  +   +  A +  DL          QNA  ++   DE     +  GK  
Sbjct: 249 I---ETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNSVRVSDEFMRAVESDGKFG 305

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                       R +  V   + A  L+RK+    +E   P I + D  N        G 
Sbjct: 306 ---------LRSRTDGSVIESVGARELFRKVAKAAWECADPGIQYDDTINDWHTSPETGR 356

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVID 637
           + +SN C+E     +S     CNL S+NL+     +  FD +    T+   +  +D  I 
Sbjct: 357 ISASNPCSEYMHLDNSS----CNLASLNLMKFLREDLTFDAELFEKTVEFVITAMDISIS 412

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 E    +    R +G+G     + L      Y S     +A      ++  A   
Sbjct: 413 FADFPTEAIGDTTRKFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKR 472

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRV 753
           S ELA   G Y  +  +                 VR    +++A+++ +   W E  +  
Sbjct: 473 SAELAGAVGPYEGYARNADAHQRVMRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIG 532

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELK 811
              G RN+    +APT TI  +    +  I+P    +  K     G   +VN  +   LK
Sbjct: 533 ARDGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALK 592

Query: 812 QRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKW 866
                 E + + ++Y    G + +   +  +  ++   A     I PM  +   +  Q +
Sbjct: 593 ALGYQQEQIEAVVEYIAEHGHVVDAPGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPF 652

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +  A S  + + E  S   ++ IY + W +GLK     R         S  KG  G+   
Sbjct: 653 LSGAISKTVNMPESASVADVEEIYFEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEK 712

Query: 926 VPVTDPNSSTHSLGIPS 942
                         +P 
Sbjct: 713 AVEKQIEYRPVRKRLPK 729


>gi|150006676|ref|YP_001301419.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|255016563|ref|ZP_05288689.1| putative ribonucleoside reductase [Bacteroides sp. 2_1_7]
 gi|256842199|ref|ZP_05547703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298377646|ref|ZP_06987597.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
 gi|149935100|gb|ABR41797.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|256736083|gb|EEU49413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298265349|gb|EFI07011.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
          Length = 846

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 147/705 (20%), Positives = 269/705 (38%), Gaps = 101/705 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  + A+ L Y   F  + L  ++  ++Y L    G+  E  P     R+A 
Sbjct: 1   MDRKTYTFDEAFKAS-LDY---FTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIARVEKKYPNPLSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM        
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDDFMNAAVNGGT 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                               + I A  LW+K++   +++  
Sbjct: 232 YKQQYPID------------------------SDSPVYVKDIDASGLWKKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPD 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FDYD     +  A R++D++ID                           H  EK ++ 
Sbjct: 328 AYFDYDLFKKHVGLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      +  L + Y + EA + A+   + ++  A  +SV LA+ERGA+ 
Sbjct: 388 TLQGRRTGVGITAEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F     ++  F    I  L E                 L + +   G RN  C+ IAPT
Sbjct: 448 IFDAKREEKNPF----INRLREADP-------------ALYEDMLKYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDL 824
            T + +   +  I+P +  +Y  +  ++ + +      V+E     ++  ++    ++ +
Sbjct: 491 GTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDSEARVDFVDETGDAFEEYIVFHHKFVTWM 550

Query: 825 KYHDGS------IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           + +  S         +E +        AT+ ++D +  +    R QKW+D + S+ + L 
Sbjct: 551 QANGYSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
               ++L D +Y +AW  G K     R  S + V  +T K    +
Sbjct: 611 NDVSEELVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKKE 655


>gi|120436488|ref|YP_862174.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
 gi|117578638|emb|CAL67107.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
          Length = 850

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 165/718 (22%), Positives = 285/718 (39%), Gaps = 117/718 (16%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKR- 338
              LKY   F  + L  ++  ++Y L   +G+  E  P     R+A  +A  E +     
Sbjct: 20  EASLKY---FKGDDLAARVWVNKYALKDSDGNIYEQTPDDMHRRIAKEIARVEKKYPNSM 76

Query: 339 -AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ----LSSCFLTT---VPDDLYGIFGALQEN 390
              E ++L+ +F ++    +   +G  +P     LS+CF+     V D   GI    QE 
Sbjct: 77  SEDEVFDLIKNFKYIVPQGSPM-AGIGNPYQVGSLSNCFVIGNDGVSDSYGGIMKIDQEQ 135

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+  
Sbjct: 136 VQLMKRRGGVGHDLSHIRPKGSAVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALML 194

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E+F+D +   G    +    N +  I D FMK V  N  +T   P      
Sbjct: 195 SVSINHPDAEDFIDAKMEQG----KVTGANVSVRIDDNFMKAVKNNGNYTQTYP------ 244

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 + K  + I A  LW+K++   +++  P I F D     
Sbjct: 245 ------------------VFSKDPKFSKDIEADKLWKKIVHNAWKSAEPGILFWDTVINE 286

Query: 571 SPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKL 621
           S       +     S+N C EI L         C L +INL ++          F+Y+  
Sbjct: 287 SVPDCYDDLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEEPFTEKAHFNYELF 342

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKA------------------------KKSNHTHRAIG 657
              I  A R++D++ID+    I+K                         +K     R  G
Sbjct: 343 KKHIGAAQRIMDDIIDLELEKIDKIIAKIDADPENEEVKAVEKNLWLNIRKKADEGRRTG 402

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+      L  L I Y S E ++ + +  + I+  A  ASV+ A+ERGA+S F      
Sbjct: 403 IGITAEGDMLAGLGIRYGSKEGIDFSVDIHKKIALAAYRASVDTAKERGAFSIFDSEREK 462

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
              F    I  L E  ++L  +             +   G RN   + IAPT T + +  
Sbjct: 463 DNPF----ILRLKEADEKLYYD-------------MLEYGRRNIALLTIAPTGTTSLMTQ 505

Query: 778 VSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-----HDGSI 831
            S  I+P +  +Y  +  ++ +        V+E+   D W+E ++   ++      +G  
Sbjct: 506 TSSGIEPVFLPVYKRRRKVNPNDKNARVDFVDEVG--DSWEEYVVFHHRFKEWMRANGHD 563

Query: 832 GNIERIPDDL-------KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
            N     ++L           AT+ ++D +  ++     QKWID + S+ + L   + + 
Sbjct: 564 TNENYTQEELDKLVKLSPYYQATSNDVDWLSKVKMQGAVQKWIDHSISVTINLPNDASED 623

Query: 885 LD-FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSL 938
           L   +Y +AW  G K     R  S + V  S  +  +         P+  P + T  +
Sbjct: 624 LVGKLYLEAWEAGCKGVTVYRDGSRSGVLISNEEKKEENEQTAGDFPLKRPETLTADV 681


>gi|325955615|ref|YP_004239275.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
 gi|323438233|gb|ADX68697.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
          Length = 562

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 164/623 (26%), Positives = 260/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E +   F  ++       S+P  
Sbjct: 27  QILNRGYLLKG-----ETVEGAIDRITAAAARRLYKPEMQ-ESFKEMIERGWMSLSSPIW 80

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 81  ANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 139

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EEFL ++           +
Sbjct: 140 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIEEFLKIKSIGNP----IQN 195

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 196 LFYGVCVPDYWMQEMIDGD----------------------------------------- 214

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    +W K+L    E G P+I F D  N   PQ +      +++SNLC+EI L SS +
Sbjct: 215 -VEKRNIWAKVLESRQEKGLPYIFFSDNVNKNKPQVYKDLNMRINASNLCSEIMLPSSRD 273

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K    +R A+  LD V+          + +  A + 
Sbjct: 274 ESFICCLSSMNL------ELYDEWKDTEAVRLAIFFLDAVLQEFIEKTEGNYYLTAANRF 327

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+   EA     E  + I   A  AS ELA+  G   
Sbjct: 328 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKLRTTEIFKHIQSKADKASEELARIYGEPE 387

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  +AIAPT
Sbjct: 388 LLKG------------------------------------------YGRRNTTTLAIAPT 405

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ + +E +   +  + 
Sbjct: 406 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGMDNEDVWRGIMLNG 465

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
           GS+ +I  + ++ K +  T  EI  + +++ A+ RQK++DQ+QSLNL +      K+++ 
Sbjct: 466 GSVQHIAELTENEKAVFKTFKEISQLEIVQQAAIRQKFVDQSQSLNLNIPANLPVKEVNR 525

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+KT YY RS+S   
Sbjct: 526 LMIEAWQLGVKTLYYQRSQSVAK 548


>gi|297618137|ref|YP_003703296.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145974|gb|ADI02731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 571

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 152/614 (24%), Positives = 254/614 (41%), Gaps = 82/614 (13%)

Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           G ++   RY +    G+  E       R+A  +A  E E  +    F  ++    F+ ST
Sbjct: 6   GQKLFEARYAIRDEKGTVAETFDQAVGRLARTVATAEKEPSQWEERFARIIGELFFVPST 65

Query: 356 PTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           P   N G      Q ++CF+  + D L  +F  L++ A++ K  GG+G +++ +R  G  
Sbjct: 66  PIWANVGKPDRPWQPAACFVLPLEDSLESVFETLKDTALVFKSGGGVGYNFSAIRPRGFP 125

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  + G++ GV+  L++ +  A  + QGG R+GA    L   H ++ EF+  +   G   
Sbjct: 126 VRSSQGQAFGVVELLRLYDHAAGIIVQGGVRRGACMGILNADHPEILEFIRAKLAGG--- 182

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  + D FM+ V +N  W L                                
Sbjct: 183 --LANFNLSVGVGDAFMEAVRENGTWRLVF-----------------------------N 211

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +   ++ A  +W  ++      G P + F D     +P +   V+ ++N C E+ L + 
Sbjct: 212 GQAIAELPAAEVWEAIVEASHACGEPGLVFLDALQRSNPIRGT-VIAATNPCGEVPLLAG 270

Query: 594 SEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 C LGSINL     A       +LA T+  AVR LDN+ID+  + +    ++   
Sbjct: 271 ES----CILGSINLAPMVDAAGNLKEVQLAETVGIAVRFLDNLIDVGQYPLTFIAQTTRA 326

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IG+G  G   AL    + Y S E    AD +   I   A  AS ELA+E+GA+  + 
Sbjct: 327 TRRIGVGFTGLADALIKSGLAYDSEEGRAWADRAAAIIKAAAEEASRELAREKGAFPWWG 386

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S++    +P D                                  RN+  +++APT ++
Sbjct: 387 RSVY----YPDDPR--------------------------------RNAALLSVAPTGSV 410

Query: 773 ANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             I       I+P +   Y KS  +     V S L  +  +R    E + S++    GS 
Sbjct: 411 TLIAACEGYGIEPIFAVAYTKSTSAAGKIEVFSPLFLQECERHGIPETVRSEV-ARRGSC 469

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
             ++ IP D+ ++   A EI P   +   +  QK +D A S  + L  E +   +D  +R
Sbjct: 470 QGVDGIPADMARVFKGAREIAPEDHLLMQAAVQKHVDNAVSKTVNLPREATPADVDHTFR 529

Query: 891 QAWLMGLKTTYYLR 904
            AW +GLK     R
Sbjct: 530 LAWELGLKGVTVFR 543


>gi|134098345|ref|YP_001104006.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910968|emb|CAM01081.1| ribonucleoside diphosphate reductase,B12-dependent
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 922

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 141/677 (20%), Positives = 246/677 (36%), Gaps = 47/677 (6%)

Query: 296 LGLQILYDRYFLH--INGSRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYN 344
             + I+  +YF     +  R    +    RV           G    E + E    E   
Sbjct: 49  NAVNIVTSKYFRGAVGSDKRENSLRQLIDRVVKTYVRNGVEHGYFATEADAEIFEHELTW 108

Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  ++ K   G G +
Sbjct: 109 MLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMESILNWYKEEGLIFKGGSGAGLN 168

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF
Sbjct: 169 LSRIRSSR-ELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEF 227

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFM----KRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +   +    +  +   +  A +  DL          QNA  ++   DE     +  GK  
Sbjct: 228 I---ETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNSVRVSDEFMRAVESDGKFG 284

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                       R +  V   + A  L+RK+    +E   P I + D  N        G 
Sbjct: 285 ---------LRSRTDGSVIESVGARELFRKVAKAAWECADPGIQYDDTINDWHTSPETGR 335

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVID 637
           + +SN C+E     +S     CNL S+NL+     +  FD +    T+   +  +D  I 
Sbjct: 336 ISASNPCSEYMHLDNSS----CNLASLNLMKFLREDLTFDAELFEKTVEFVITAMDISIS 391

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 E    +    R +G+G     + L      Y S     +A      ++  A   
Sbjct: 392 FADFPTEAIGDTTRKFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKR 451

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRV 753
           S ELA   G Y  +  +                 VR    +++A+++ +   W E  +  
Sbjct: 452 SAELAGAVGPYEGYARNADAHQRVMRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIG 511

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELK 811
              G RN+    +APT TI  +    +  I+P    +  K     G   +VN  +   LK
Sbjct: 512 ARDGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALK 571

Query: 812 QRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKW 866
                 E + + ++Y    G + +   +  +  ++   A     I PM  +   +  Q +
Sbjct: 572 ALGYQQEQIEAVVEYIAEHGHVVDAPGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPF 631

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +  A S  + + E  S   ++ IY + W +GLK     R         S  KG  G+   
Sbjct: 632 LSGAISKTVNMPESASVADVEEIYFEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEK 691

Query: 926 VPVTDPNSSTHSLGIPS 942
                         +P 
Sbjct: 692 AVEKQIEYRPVRKRLPK 708


>gi|118594264|ref|ZP_01551611.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
 gi|118440042|gb|EAV46669.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
          Length = 720

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 136/664 (20%), Positives = 257/664 (38%), Gaps = 69/664 (10%)

Query: 293 FEYLGLQILYDRYFLH------INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNL 345
           F+ + + I   +Y L       ++ +     Q  + RVA  LA  E  EK     E +  
Sbjct: 21  FQSVSMDIWDKKYRLKSKQGTFVDNNI----QDTYNRVAKALAEVEIPEKRDLWHERFVW 76

Query: 346 LSSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
                 + +     N+G    +      +      + D +  I   ++E  +  K   G+
Sbjct: 77  ALQRGAIPAGRITSNAGALEHKPATSTINCTVSGIIEDSMTDILDKVKEAGLTLKAGCGI 136

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV 
Sbjct: 137 GYEYSTLRPKGAFVAGAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDIAHPDVT 196

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL---------- 510
           +F+  ++  G    R    N +  I   FM+ V  +  W L  P    +           
Sbjct: 197 DFIKAKREDG----RLRQFNLSCLITKEFMEAVKADGEWKLAFPITEKEAKEDQIDLKNN 252

Query: 511 HDLYGKEFEIAYENYERQ----ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +  +E+ +  +         A +   KV++ + A  LW  +++  ++   P     D 
Sbjct: 253 EQVVWREWPVNGKYLTELKGKNAGKVACKVYKTLKAKRLWDIIMSSTYDYAEPGFILIDR 312

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKL 621
            N  +       + ++N C E  L         C LGSINL     N       F++D+ 
Sbjct: 313 VNEMNNNWFCENIRATNPCGEQPLPP----YGACLLGSINLTKFVKNPFTDKAYFNWDEY 368

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +    R+LDNV++IN   +EK +      R  G+G +G  S+L ++ + Y   ++++
Sbjct: 369 KEVVGIFTRMLDNVVEINGLPLEKQRDEIARKRRHGMGYLGLGSSLAMMQMVYGDEKSIK 428

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRD 734
             ++    ++       V+LA+E+GA    +         L  +     D I +  ++  
Sbjct: 429 FTEDVSRILAEEGWKTGVDLAKEKGAAPIMEELFEVTPAMLAMRPEMETDGIKIGDKLPG 488

Query: 735 ELAMNRTSRLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNL 789
           ++ M R SR        L+ ++   G+R S+  +IAPT TI+       S  I+PS+ + 
Sbjct: 489 KVLMGRYSRYMQQFPKSLQDQIADQGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHH 548

Query: 790 YVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           Y ++ +         V+ F    L  R L ++  +   +  +          + L     
Sbjct: 549 YSRNVIREGKKSKEKVDVFSFELLAYRHLINQKAMPFSEKEN----------EKLPDYFI 598

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRS 905
            +  I     ++  +  QKWID + S  + +      +    IY  A+  GLK     R 
Sbjct: 599 DSSTIQAKAHVDIQAAAQKWIDSSISKTINVPTDYDYEDFKSIYLYAYDKGLKGCTTFRF 658

Query: 906 RSAT 909
               
Sbjct: 659 NPEA 662


>gi|146301801|ref|YP_001196392.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacterium
           johnsoniae UW101]
 gi|146156219|gb|ABQ07073.1| ribonucleoside-diphosphate reductase, alpha chain [Flavobacterium
           johnsoniae UW101]
          Length = 565

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 165/623 (26%), Positives = 258/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E     F  ++       S+P  
Sbjct: 30  QILNRGYLLKG-----ETVEGAIDRICTAAARRLYKPE-LKESFVEMIERGWMSISSPVW 83

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 84  ANMGTERGLPISCFNVHVPDKIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 142

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EEFL ++           +
Sbjct: 143 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIEEFLKIKSIGNP----IQN 198

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           + T   +PD +M+ +                                             
Sbjct: 199 LFTGICVPDYWMQEMIDGDA---------------------------------------- 218

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
                 +W K+L    + G P+I F D  N   PQ +      +++SNLC+EI L S+ +
Sbjct: 219 --DKRQIWAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNLRINASNLCSEIMLPSTHD 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        ++  K    ++ A+  LD V+          + +  A K 
Sbjct: 277 ESFICCLSSMNL------ELYEEWKDTEAVKLAIFFLDAVLQEFIEKTEGNYYLSAANKF 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+   EA     E  + IS  A  AS ELA+  G   
Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISDKADKASQELARIYGEPE 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 391 LLKG------------------------------------------YGRRNTTTMAIAPT 408

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E +   +  + 
Sbjct: 409 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGLDNEEVWRGIMLNG 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ ++ ++    K +  T  EI  + +++ A  RQK++DQ QSLNL +  E + K ++ 
Sbjct: 469 GSVQHMSQLTQQEKDVFKTFKEISQLEIVQQAGIRQKFVDQGQSLNLNIPAELAIKDVNR 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW  G+K+ YY RS+S + 
Sbjct: 529 LMIEAWQQGVKSLYYQRSQSVSK 551


>gi|325000219|ref|ZP_08121331.1| vitamin B12-dependent ribonucleotide reductase [Pseudonocardia sp.
           P1]
          Length = 964

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 131/632 (20%), Positives = 234/632 (37%), Gaps = 33/632 (5%)

Query: 314 IEMPQAFFMR--VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSS 370
           +E     + R  V  G    + + E    E   +L    F  ++P  FN GT  PQ +S+
Sbjct: 122 VERVVGTYRRAGVENGYFATDADAEVFDHELTWMLIHQVFSFNSPVWFNVGTPSPQQVSA 181

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ +V D +  I    +E  ++ K   G G + + +R     +  + G + G + F++ 
Sbjct: 182 CFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRG 240

Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           A+ +A  +  G   R+ A    L+  H DVEEF+   +    +  +   +  A +  DL 
Sbjct: 241 ADASAGTIKSGGATRRAAKMVVLDVDHPDVEEFV---ETKAKEEAKVRVLRDAGFDMDLG 297

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVALWR 547
              +T        +   VSD       EF  A E       R  +   V   + A  L+ 
Sbjct: 298 GSDITSVQYQNANNSIRVSD-------EFMRAVEEDTEFGLRARMTGEVIDTVDARKLFH 350

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +    +    P I +    N        G + +SN C+E     +S     CNL S+NL
Sbjct: 351 GIAEAAWNCADPGIQYDGTINDWHTCPESGRITASNPCSEYMHLDNSS----CNLASLNL 406

Query: 608 LAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L    A+++FD +  A  +   +  +D  I       +    +    R +G+G     + 
Sbjct: 407 LKFLDADDRFDAETFAKAVELIITAMDISICFADFPTDPIADTTRKFRQLGIGYANLGAL 466

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y S     +A      ++  A   S ELA   G Y  +  +            
Sbjct: 467 LMATGHAYDSEGGRALAGAITSLMTGAAYKRSAELAGVVGPYEGYARNAEAHQRVIRKHA 526

Query: 727 GLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSI 782
                +R      A+ + + L W + ++  +  G RN+    +APT TI  +    +  I
Sbjct: 527 AANDGIRTFAASTAIQKLATLTWKQCQEIGEANGWRNAQASVLAPTGTIGLMMDCDTTGI 586

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---D 839
           +P    +  K  + G    + +  V        +       +  +    G++   P    
Sbjct: 587 EPDLALVKFKKLVGGGSMQIVNQSVRRALDNLGYQAEQAEAIVEYVAEHGHVVDAPGMRP 646

Query: 840 DLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
           +  ++   A     I PM  +   +  Q ++  A S  + + E  + + ++ IY + W +
Sbjct: 647 EHYEVFDCAMGERSIAPMGHVRMMAAAQPFLSGAISKTVNMPERATVEDVERIYLEGWRL 706

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           GLK     R         S  KG  G+  A  
Sbjct: 707 GLKALAIYRDNCKVGQPLSAGKGGSGEKTAEA 738


>gi|159037049|ref|YP_001536302.1| vitamin B12-dependent ribonucleotide reductase [Salinispora
           arenicola CNS-205]
 gi|157915884|gb|ABV97311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora arenicola CNS-205]
          Length = 962

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 146/672 (21%), Positives = 249/672 (37%), Gaps = 57/672 (8%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQ------AFFMRVAMGL--ALKE-------TEKEKRAV 340
               I+  +YF       +  P+          RV      A +E        + E  A 
Sbjct: 69  NAANIVTTKYFR----GAVGTPEREWSLRQLIDRVVATYRTAGEEYGYFATPADAEIFAH 124

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G
Sbjct: 125 ELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILDWYKEEGLIFKGGSG 184

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D
Sbjct: 185 SGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPD 243

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514
           +EEF+  +    D  R   D   A +  DL    +     QNA  ++   DE        
Sbjct: 244 IEEFVVTKAREEDKVRALRD---AGFDMDLGGTDIVSVQYQNANNSVRVTDEFMAAVQS- 299

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G  F++          R +  V   I A  L+R +    +E   P + + D  N      
Sbjct: 300 GGTFDLR--------GRLDGTVIDTIDAKPLFRTISQAAWECADPGLQYDDTINDWHTCP 351

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLD 633
             G + +SN C+E     +S     CNL S+NL+    ++  F+  K   ++   +  +D
Sbjct: 352 ETGRITASNPCSEYLHLDNSS----CNLASLNLMRFLRSDGGFEVAKFVRSVELVITAMD 407

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             I       EK   +   +R +G+G     + L    +PY+S +   +A      ++  
Sbjct: 408 ISICFADFPTEKIGATTRAYRQLGIGYANLGALLMASGLPYSSDQGRSLAAAITSLMTGT 467

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDEL 749
           A   S ELA   GAY  +  +                E++       A+ R +   W   
Sbjct: 468 AYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPSGTVATAVQREATRQWSLG 527

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            K     G RNS    +APT TI  +    +  ++P    +  K  + G    + +  V 
Sbjct: 528 NKIGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTVP 587

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESAS 861
              +   + E  +  +  H    G++   P  LK  H   F+       I PM  +   +
Sbjct: 588 RALRSLGYPEEQVEAIVEHIAEHGHVVDAP-GLKPEHYPVFDCAMGERSIAPMGHVRMMA 646

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q +I  A S  + + E  + + ++ IY + W +GLK     R         S  K   
Sbjct: 647 AVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQPLSVAKKDR 706

Query: 921 GKLNAVPVTDPN 932
               +V      
Sbjct: 707 NAAVSVESVPAA 718


>gi|307822851|ref|ZP_07653082.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
 gi|307736455|gb|EFO07301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
          Length = 716

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 138/660 (20%), Positives = 255/660 (38%), Gaps = 71/660 (10%)

Query: 293 FEYLGLQILYDRYFLHI------NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           F+   + I   +Y L        +G+  E  Q    RVA  ++  E  K K+   + + L
Sbjct: 17  FQDASMDIWDTKYRLKTKDGIAIDGTIDETYQ----RVAKAISAVEKGKTKQEQCYKDFL 72

Query: 347 SSFH--FMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +     + +     N+G    +      +     T+ D +  I G + E  +  K   G
Sbjct: 73  WALRQGAIPAGRITSNAGALEHKPATSTINCTVSGTIADSMDDILGKVHEAGLTLKAGCG 132

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R   A++ G    + G + F+ + +     V+  G R+GA  A  +  H DV
Sbjct: 133 IGYEFSTLRPKNAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDV 192

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYG 515
            EF+  ++  G    R    N +  I   F++ V  +  W+L  P    ++     DL  
Sbjct: 193 VEFIRAKREDG----RLRQFNLSLLITSEFVEAVKNDKPWSLSFPVTEKEVKLDNLDLTD 248

Query: 516 KEFEIAYE------NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +  I  +                 K+ + + A  LW  +++  ++   P     D  N 
Sbjct: 249 DKLIIWRDLPYIDGYILNDDGMVACKISKTMPARRLWDIIMSSTYDYAEPGFILIDKVNE 308

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLAST 624
            +       + ++N C E  L         C LGSINL          +  FD+D     
Sbjct: 309 MNNNWFCEKIRATNPCGEQPLPPYGS----CLLGSINLTRFVKKPFTNDAHFDWDNYRKA 364

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I+   R+LDNV++IN   + + ++   T R  G+G +G  S + ++ + Y   +++E  +
Sbjct: 365 IKIFTRMLDNVVEINGLPLAQQREEILTKRRHGMGYLGLGSTVTMMGMKYGDAQSLEFTE 424

Query: 685 ESMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELA 737
           E  + ++     A + LA+E+G     +         L  +     D   +   V  +L 
Sbjct: 425 EVTKVLAVEGWKAGLALAKEKGPAPIMEQMFSVTGEMLHKRPEMIADGYKVGDRVPGKLL 484

Query: 738 MNRTSRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNL 789
             + SR          EL   +   G R ++  +IAPT TI+       S  I+PS+ + 
Sbjct: 485 HTKYSRYMQQVAQEEPELVAELIETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHH 544

Query: 790 YVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           Y ++ +         ++ F    L  R++ +   +             +     L     
Sbjct: 545 YSRNVIRAGKKSKEKIDVFSFELLAYREMVNADAMP----------YSDDPEQKLPDYFI 594

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            A ++ P   ++  +  QKWID + S   N+  D P  +    IY  A+  GLK     R
Sbjct: 595 AADDVTPKQHVDIQAAAQKWIDSSISKTANVPTDYPY-EDFKSIYEYAYDKGLKGCTTFR 653


>gi|301308944|ref|ZP_07214889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
 gi|300832970|gb|EFK63595.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
          Length = 846

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 147/705 (20%), Positives = 269/705 (38%), Gaps = 101/705 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  + A+ L Y   F  + L  ++  ++Y L    G+  E  P     R+A 
Sbjct: 1   MDRKTYTFDEAFKAS-LDY---FTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    S  T   +  +   LS+CF+  +    D
Sbjct: 57  EIARVEKKYPNPLSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM        
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDDFMNAAVNGGT 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                               + I A  LW+K++   +++  
Sbjct: 232 YKQQYPID------------------------SDSPVYVKDIDASGLWKKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPD 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKS 649
             FDYD     +  A R++D++ID                           H  EK ++ 
Sbjct: 328 AYFDYDLFKKHVGLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      +  L + Y + EA + A+   + ++  A  +SV LA+ERGA+ 
Sbjct: 388 TLQGRRTGVGITAEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F     ++  F    I  L E                 L + +   G RN  C+ IAPT
Sbjct: 448 IFDAKREEKNPF----INRLREADP-------------VLYEDMLKYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDL 824
            T + +   +  I+P +  +Y  +  ++ + +      V+E     ++  ++    ++ +
Sbjct: 491 GTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDSEARVDFVDETGDAFEEYIVFHHKFVTWM 550

Query: 825 KYHDGS------IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           + +  S         +E +        AT+ ++D +  +    R QKW+D + S+ + L 
Sbjct: 551 QANGYSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLP 610

Query: 879 EPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
               ++L D +Y +AW  G K     R  S + V  +T K    +
Sbjct: 611 NDVSEELVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKKE 655


>gi|228471291|ref|ZP_04056097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
 gi|228306933|gb|EEK16031.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
          Length = 857

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 155/698 (22%), Positives = 275/698 (39%), Gaps = 109/698 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + +    FD  Y A  L Y   F  + L  ++   +Y L  + G+  E  P+    R+A 
Sbjct: 1   MKQKTYSFDEAYQAT-LDY---FGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIAR 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV---PD 378
            L   E          E  +L+  F ++    S  T   +  +   LS+CF+  +   PD
Sbjct: 57  ELVRIEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
              GI    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGGIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V ++  
Sbjct: 177 AQDG-RRGALMLTVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVEDKE 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P                            E K  R I A  LW K++   + +  
Sbjct: 232 YLQTYP------------------------VHSAEPKFTRTIQARQLWDKIIYNAWRSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S       +     S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDS----CRLLAINLYSYVRNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVID------------------------INCHTIEK 645
                 FD+D     +  A+R++D++ID                               K
Sbjct: 324 FTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K+     R  G+G+      L  + + Y S EA+  A+E  + +   A ++SVELA+ER
Sbjct: 384 IKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  +A+   +             L + +K  G RN   + 
Sbjct: 444 GAFDLYDTEREKDNPF----IQRIAKADPK-------------LYEEMKKFGRRNIAMLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWDEAM 820
           IAPT + + +   S  I+P +  +Y  +  ++ +   V     +E     ++  ++    
Sbjct: 487 IAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNF 546

Query: 821 ISDLKYH------DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           ++ +K +      + S   ++ +        ATA ++D +  ++   R Q+W+D + S+ 
Sbjct: 547 LTWMKINGYDPEKNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISVT 606

Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           + L    S + +  +Y +AW  G K     R  S + V
Sbjct: 607 INLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGV 644


>gi|12084868|ref|NP_073333.1| ribonucleotide reductase subunit 1 [Meleagrid herpesvirus 1]
 gi|11095872|gb|AAG30079.1|AF282130_42 UL39 ribonucleotide reductase large subunit [Meleagrid herpesvirus
           1]
 gi|12025151|gb|AAG45777.1|AF291866_44 UL39 ribonucleotide reductase, large subunit [Meleagrid herpesvirus
           1]
          Length = 820

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 172/693 (24%), Positives = 286/693 (41%), Gaps = 81/693 (11%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQAFFMRV------ 324
            ++ D++    ++        + LGLQ  + Y+ Y + + G + E    FF+R+      
Sbjct: 153 HIEMDMLRFYGNIYP----QLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAAT 208

Query: 325 -AMG----LALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            A+     +A               F+  L+   F+ STP +   G      +SC+L  +
Sbjct: 209 EALHRKPLIASLTNGSANWRTAFTSFFLALAHQLFVPSTPCMLFLGREGYSTASCYL--M 266

Query: 377 PDDLYGIFGALQ----ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                     ++    +        GG+G     V            +  G++  LK+ +
Sbjct: 267 DPRTTTTQDTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLID 315

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMK 491
              VA N    R   VC YLE WH D+   L +R     ++ RR  ++  A W  DL  K
Sbjct: 316 SLIVATNVNESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFK 375

Query: 492 RV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           R        +N  WTLF     S L  LYG +FE+ YE  E++          +I    +
Sbjct: 376 RYLRYVNGEKNVMWTLFDSR-ASILSKLYGDKFEVEYERLEKEGIG-----VAQIPIRDM 429

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGS 604
              ++     TG P+I FKD CN        G  +  SNLCTEI   ++     VC L S
Sbjct: 430 MFAIIKSAASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLAS 489

Query: 605 INLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           INL           +FD+D L   +R A    + ++D +     K++     +R+IG+G+
Sbjct: 490 INLARCVRRVNGECKFDFDALRHAVRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGV 549

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
            GF +A+  L +         +  +  E +   A++ S E  +     +  F  S + QG
Sbjct: 550 QGFHTAMLSLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQG 609

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               D            ++  T+   W  L+ R+ + G+ N+  +A+ PTA  A +  VS
Sbjct: 610 RLHFDGWD---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVS 660

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK--------QRDLWDEAMISDLKYHDGSI 831
           +   P + N++ K   +G+    NS L+ EL+        +R     A+ S       ++
Sbjct: 661 EGFAPLFSNMFSKVTSAGELLRPNSQLMRELRQIYPDNEQRRLSAITALESTAWCVKEAL 720

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----D 886
           G+       LK  + TAFE D   LI+  + R  ++DQ+QS+ L++ E +   L      
Sbjct: 721 GDRPECTRLLK--YKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVM 778

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
            +   A+  GLKT  YY + R AT+    +  G
Sbjct: 779 NLLLHAYKAGLKTGMYYCKIRKATNTGIFSGDG 811


>gi|145594000|ref|YP_001158297.1| vitamin B12-dependent ribonucleotide reductase [Salinispora tropica
           CNB-440]
 gi|145303337|gb|ABP53919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora tropica CNB-440]
          Length = 963

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/654 (21%), Positives = 246/654 (37%), Gaps = 55/654 (8%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQ------AFFMRVAMGL--ALKE-------TEKEKRAV 340
               I+  +YF       +  P+          RV      A +E        + E  A 
Sbjct: 69  NAANIVTTKYFR----GAVGTPEREWSLRQLIDRVVATYRTAGEEYGYFATPNDAEIFAH 124

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  ++ K   G
Sbjct: 125 ELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILDWYKEEGLIFKGGSG 184

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHID 458
            G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D
Sbjct: 185 SGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPD 243

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLY 514
           +EEF+  +    D  R   D   A +  DL    +     QNA  ++   DE        
Sbjct: 244 IEEFVVTKAREEDKVRALRD---AGFDMDLGGADIVSVQYQNANNSVRVSDEFMTAVQ-D 299

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G  F++          R +  V   I A +L+R +    +E   P + + D  N      
Sbjct: 300 GGTFDLR--------GRLDGTVIDTIDAKSLFRTISQAAWECADPGLQYDDTINDWHTCP 351

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLD 633
             G + +SN C+E     +S     CNL S+NL+    A+  F+ +K   ++   +  +D
Sbjct: 352 ETGRITASNPCSEYLHLDNSS----CNLASLNLMRFLRADGGFEVEKFVRSVELVITAMD 407

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             I       EK  ++   +R +G+G     + L    +PY S +   +A      ++  
Sbjct: 408 ISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYGSDQGRSLAAAITSLMTGT 467

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDEL 749
           A   S ELA   GAY  +  +                E++       A+ R +   W   
Sbjct: 468 AYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGAVATAVQREATRQWTLG 527

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            K     G RNS    +APT TI  +    +  ++P    +  K  + G    + +  V 
Sbjct: 528 NKVGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNQTVP 587

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASR 862
              +   + E  +  +  +    G++   P    +   +   A     I PM  +   + 
Sbjct: 588 RALRSLGYPEEQVEAIVEYIAEHGHVVDAPGLRPEHYPVFDCAMGERSIAPMGHVRMMAA 647

Query: 863 RQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Q +I  A S  + + E  + + ++ IY + W +GLK     R         S 
Sbjct: 648 VQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQPLSV 701


>gi|114776813|ref|ZP_01451856.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
 gi|114552899|gb|EAU55330.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
          Length = 723

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 147/658 (22%), Positives = 256/658 (38%), Gaps = 59/658 (8%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKETEK--EKRAVEFYNLLSS 348
           F+     I   +Y L    G  I++  QA + RVA  LA  E E   E     F   L++
Sbjct: 26  FQPASEDIWDKKYRLKDKLGREIDLDIQATYDRVATALAQVENEDVRELWHERFVWALAN 85

Query: 349 FHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +   + N+G          ++     T+PD + GI   + E  +  K   G+G +
Sbjct: 86  GAI-PAGRIMSNAGAEAHKPATSTINCTVSGTIPDSMTGILSMVHEAGLTLKAGCGIGYE 144

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H D+ EF+
Sbjct: 145 FSTLRPKGAYVSGAGAYTSGPMSFMDIYDKMCFTVSSAGGRRGAQMGTFDISHPDIVEFI 204

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++  G    R    N +  I   FM+ V  +A W L  P   +++ D   +       
Sbjct: 205 RAKREDG----RLRQFNLSCLITRDFMEAVKHDADWDLVFPASQTEIDDADTRIVFKPVA 260

Query: 524 NYER-----QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           N  +            KV++ + AV LW  ++   ++   P     D  N  +       
Sbjct: 261 NPPKGSVKDDRGHVACKVYKTMKAVRLWDVIMASTYDYAEPGFILIDEVNEMNNNWFCED 320

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLD 633
           V ++N C E  L         C LGS+NL          N +FD+D     +    R+LD
Sbjct: 321 VRATNPCGEQPLPP----YGACLLGSVNLTRFVRDPFTDNARFDWDTYREVVSIFTRMLD 376

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV++IN   +EK ++     R  G+G +G  S L +L  PY S E++   ++    ++  
Sbjct: 377 NVVEINGLPLEKQRQEIMRKRRHGMGFLGLGSTLTMLRTPYGSTESLAFTEQIAYEMART 436

Query: 694 AISASVELAQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL-- 744
                +EL  E+GA  +           +  +     D I +   V  ++   + SR   
Sbjct: 437 GFQTGLELVDEKGAAPALTDLYEITPEMMAKRPEMADDGIKIGDMVAGKVLWGKYSRYMQ 496

Query: 745 ---------PWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
                        L + ++  G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 497 KFRDTANAEDAAMLDELIEK-GCRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 555

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +           V+      L   A I+       +  N       L     +A E+ P
Sbjct: 556 IIREGRKSKEK--VDVFSYELLAYRAHINADAMPYATDEN-----AKLPDYFISADEVTP 608

Query: 854 MWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
              ++  +  Q+W+D + S   N+  + P  +    IY  A+  GLK     R     
Sbjct: 609 KQHVDIQAAAQRWVDSSISKTANVPTEFPYDE-FKDIYLYAYEQGLKGCTTFRFNPEA 665


>gi|256422446|ref|YP_003123099.1| ribonucleotide-diphosphate reductase subunit alpha [Chitinophaga
           pinensis DSM 2588]
 gi|256037354|gb|ACU60898.1| ribonucleoside-diphosphate reductase, alpha chain [Chitinophaga
           pinensis DSM 2588]
          Length = 565

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/623 (25%), Positives = 257/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E     F  ++       S+P  
Sbjct: 30  QILNRGYLLKG-----ETVEGAIDRICTAAAQRLYKPE-LKEAFVEMIERGWMSLSSPIW 83

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD++ GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 84  ANMGTERGLPISCFNVHIPDNIEGITHKLGEVIMQTKIGGGTSAYFGGLRARGSAVTD-N 142

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+++ +     ++QGG R+GA  AY++  H D++EFL ++    D      +
Sbjct: 143 GKSSGAVSFMRLFDTAMDTISQGGVRRGAFAAYMDIDHDDIQEFLSIK----DIGHPIQN 198

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 199 LFYGVCVPDYWMQDMIDGD----------------------------------------- 217

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    +W K+L    + G P++ F D  N   PQ +      +++SNLC+EI L S+ +
Sbjct: 218 -MEKREIWAKVLESRQQKGLPYLFFTDNVNRNKPQVYKDLNLAINASNLCSEIMLPSTED 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K    ++ A   LD V+          H +  A + 
Sbjct: 277 ESFICCLSSMNL------ELYDEWKDTDAVKLATFFLDAVLQEFIVKTEGNHFLAAANRF 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    I +   +A ++     + I   A  A+ ELA   G   
Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIAFEGMQAKQLTSIIFKDIRDKAEKATKELAWIYGEPE 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 391 VLKG------------------------------------------YGRRNTTLMAIAPT 408

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N +      G+F   N +L   L+Q+ + +E     +  + 
Sbjct: 409 TSSSAILGQTSPGIEPFSSNYFKAGLSKGNFMRKNKYLKALLEQKGIDNEDTWRSIMLNH 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDF 887
           GS+ ++E + +  K +  T  EI  + +++ A+ RQ  +DQAQSLNL +      K+++ 
Sbjct: 469 GSVQHLEELTEHEKDVFKTFKEISQLEIVQQAAIRQTHVDQAQSLNLNIPSNLPVKEVNR 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+KT YY RS+S + 
Sbjct: 529 LLIEAWKLGVKTLYYQRSQSVSK 551


>gi|332664296|ref|YP_004447084.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333110|gb|AEE50211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 865

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 143/674 (21%), Positives = 267/674 (39%), Gaps = 101/674 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L   +  ++Y L  + G+  E  P     R+A  +A  E++        E Y L+
Sbjct: 28  FNGDNLAANVWVNKYALKDSFGNIYEKTPDDMHRRIAKEIARIESKYPNPLNEEEAYELV 87

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +F ++    +       + Q   LS+CF+     D   GI    +E   L K  GG+G+
Sbjct: 88  RNFKYIVPQGSPMAGIGNNMQVSSLSNCFVIGNFADSYGGIIRTDEEQVQLMKRRGGVGH 147

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   + + H D E+F
Sbjct: 148 DLSHIRPKGSPVMNSALSSTGIVPFMERYSNSTREVAQDG-RRGALMLTVSSKHPDAEDF 206

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +D +   G    +    N +  I D FM+       +    P +  +             
Sbjct: 207 IDAKLEQG----KVTGANVSVRIDDDFMRAAIGGTPYQQQFPVDAKN------------- 249

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       KV ++I A ALW K++   +++  P + F D     S       +   
Sbjct: 250 -----------PKVTKEIDASALWDKIIYNAWKSAEPGVLFWDTVLRESVPDCYADLGYR 298

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVID 637
            + T             C L ++NL ++          F+++K A   + A R +D++ID
Sbjct: 299 TISTNPCGEIPLSPYDSCRLLALNLYSYVEQPFTPEAFFNFEKFAKHAQLAQRFMDDIID 358

Query: 638 INCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +    +++                         + +    R  G+G+      L  L   
Sbjct: 359 MELEKVDRIIEKIEKDPEARDLKEVEYELWNKVRTACIGGRRTGVGITAEGDTLAALGFR 418

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S E +E+A +  + ++ +A  ASV++A++RGA+  F     +Q  F    I  LA V 
Sbjct: 419 YGSDEGIEMAVKIHQSLAVNAYRASVDMARDRGAFPIFDSKREEQNPF----IQRLASVD 474

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-K 792
                          L   ++  G RN   + IAPT T + +   +  I+P +   Y  +
Sbjct: 475 P-------------TLYADMQRYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFMVSYKRR 521

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK---------- 842
             ++ +   V    ++E+     W+E  +   K+ D    N  ++ +  K          
Sbjct: 522 RKVNPNDKEVKVAFIDEVGDH--WEEYNVFHHKFLDWLQQNGYQVDEVTKMNAEELQPII 579

Query: 843 ----KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGL 897
                  ATA ++D +  ++     QKW+D + S+ + + E +    +  IY+ AW +G 
Sbjct: 580 EKSPYHKATANDVDWVQKVKMQGAIQKWVDHSISVTVNVPEDTSVDMVKRIYQTAWEVGC 639

Query: 898 KTTYYLRSRSATSV 911
           K     R  S + V
Sbjct: 640 KGCTIYRDGSRSGV 653


>gi|255683174|ref|YP_003084382.1| UL39 [Duck enteritis virus]
 gi|158343205|gb|ABW35295.1| ribonucleotide reductase subunit 1 [Anatid herpesvirus 1]
 gi|254839989|gb|ACT83535.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 162/598 (27%), Positives = 260/598 (43%), Gaps = 54/598 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399
           F+  LSS   + +TP +   G      +SC+L       +   +   L E A + +  GG
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +          N +S+G++  LK+ +   +A+N    R   VC Y+E WH D 
Sbjct: 281 VGIALHTL--------NQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332

Query: 460 EEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLHD 512
              L ++     ++  R   + +A W+PDL  KR        ++  WT F  D  S+L  
Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNLSK 391

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR-S 571
           LYG  FE  YE YE      +      I    +   ++     TG P+I  KD  N    
Sbjct: 392 LYGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYH 446

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                  +  SNLCTEI   +  +   VCNL SINL            +FD   L   +R
Sbjct: 447 LDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVR 506

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++    
Sbjct: 507 TATIFVNAMMLCNDYPTEKSRAGMERHRSIGIGLQGLHTTFLRLGLDMVCDEARKLNKRI 566

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A++ S EL +     +S F  S++  G F  D             +  T +  
Sbjct: 567 AELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYE 617

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WDEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    N  
Sbjct: 618 WDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPL 677

Query: 806 LVNELKQRDLWDEAMISDLKYHD-------GSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           L+ EL+     ++  +  L+  +        + GN       +K  + T FE + + L+ 
Sbjct: 678 LMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQIDLLN 735

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
               R  ++D +QS +LY+ E S   L       +   A+  GLKT  YY R R AT+
Sbjct: 736 MCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793


>gi|302525528|ref|ZP_07277870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
 gi|302434423|gb|EFL06239.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
          Length = 938

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 138/655 (21%), Positives = 240/655 (36%), Gaps = 45/655 (6%)

Query: 316 MPQAFFMRVAMGL--ALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTR-H 365
             +    RV      A  E +        E    E   +L    F  ++P  FN GT   
Sbjct: 93  SLKQLIDRVVRTYVKAAAEHDYFAGPSDLEIFEHELTWMLLHQVFSFNSPVWFNVGTSSK 152

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            Q+S+CF+  V D +  I    +E  ++ K   G G + + +R     +  + G + G +
Sbjct: 153 QQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSS-KELLTSGGTASGPV 211

Query: 426 PFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            F++ A+ +A  +  G   R+ A    L+  H D+EEF+  +    +  +   D   A +
Sbjct: 212 SFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIQTKAREEEKIKVLRD---AGF 268

Query: 485 IPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
             DL    ++    QNA  ++   DE     +  G +F +          R   +V  + 
Sbjct: 269 DMDLSGSDISSVQYQNANNSVRVSDEFMHAVE-NGTDFGLR--------ARLTGEVIDRT 319

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  L+R M    +E   P + +    N        G + +SN C+E     +S     C
Sbjct: 320 DAKKLFRSMAQAAWECADPGVQYDSTINDWHTCPESGRITASNPCSEYMHLDNSS----C 375

Query: 601 NLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL S+NLL   ++   FD    A  +   +  +D  I       E    +    R +G+G
Sbjct: 376 NLASLNLLKFVSDDGTFDAPLFAKAVEFVITAMDISICFADFPTEPIADTTRKFRQLGIG 435

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                + L  L   Y S     +A      ++  +   S ELA   G Y  +  +     
Sbjct: 436 YANLGALLMALGHAYDSEGGRALAAAITSLMTGVSYRRSAELAGVVGPYEGYARNAEAHQ 495

Query: 720 VFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                       VR    ++ A+   +   W +  +     G RN+    +APT TI  +
Sbjct: 496 RVMRKHAAANELVRTYHSNDAAVRALASEEWQKGIELGTRNGWRNAQASVLAPTGTIGFM 555

Query: 776 CGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSI 831
               +  I+P +  +  K     G   +VN  +   LK      E + + ++Y    G +
Sbjct: 556 MDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTVPRALKVLGYQAEQVEAIVEYVAQHGHV 615

Query: 832 GNIERIPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
            +   +  +  ++   A     I PM  +   +  Q +I  A S  + + E  + + ++ 
Sbjct: 616 VDAPGLRPEHYEVFDCAVGDRSIAPMGHVRMMAAVQPFISGAISKTVNMPESATVEDVEE 675

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           IY Q W +GLK     R         ST K  +    A P            +P 
Sbjct: 676 IYFQGWKLGLKALAIYRDNCKVGQPLSTAKKKEAVAEAEPEKVVEYRPVRRRLPK 730


>gi|208401181|gb|ACI26682.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 162/598 (27%), Positives = 260/598 (43%), Gaps = 54/598 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399
           F+  LSS   + +TP +   G      +SC+L       +   +   L E A + +  GG
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +          N +S+G++  LK+ +   +A+N    R   VC Y+E WH D 
Sbjct: 281 VGIALHTL--------NQNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332

Query: 460 EEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVT------QNAGWTLFSPDEVSDLHD 512
              L ++     ++  R   + +A W+PDL  KR        ++  WT F  D  S+L  
Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFD-DRASNLSK 391

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR-S 571
           LYG  FE  YE YE      +      I    +   ++     TG P+I  KD  N    
Sbjct: 392 LYGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYH 446

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                  +  SNLCTEI   +  +   VCNL SINL            +FD   L   +R
Sbjct: 447 LDTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVR 506

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++    
Sbjct: 507 TATIFVNAMMLCNDYPTEKSRAGMERHRSIGVGLQGLHTTFLRLGLDMVCDEARKLNKRI 566

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A++ S EL +     +S F  S++  G F  D             +  T +  
Sbjct: 567 AELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYE 617

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WDEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    N  
Sbjct: 618 WDELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPL 677

Query: 806 LVNELKQRDLWDEAMISDLKYHD-------GSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           L+ EL+     ++  +  L+  +        + GN       +K  + T FE + + L+ 
Sbjct: 678 LMEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMK--YKTVFEYNQIDLLN 735

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT-TYYLRSRSATS 910
               R  ++D +QS +LY+ E S   L       +   A+  GLKT  YY R R AT+
Sbjct: 736 MCRDRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793


>gi|311898754|dbj|BAJ31162.1| putative vitamin B12-dependent ribonucleotide reductase
           [Kitasatospora setae KM-6054]
          Length = 964

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 134/607 (22%), Positives = 236/607 (38%), Gaps = 32/607 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L    F  ++P  FN GT+ PQ +S+CF+  V D +  I  
Sbjct: 120 GYFASPDDAEIFEHELTHALLHQVFSFNSPVWFNVGTQQPQQVSACFILAVDDSMDSILD 179

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 180 WYKEEGMIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATR 238

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFS 503
           + A    L+  H DVE F++ +    +  R   D      +  D       QNA  ++  
Sbjct: 239 RAAKMVVLDVDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 298

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            DE     +  G  F +          R   +V   + A AL+RKM    +    P I +
Sbjct: 299 NDEFMTAVE-NGGSFGLR--------ARMTGEVIETVDAKALFRKMAEAAWACADPGIQY 349

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLA 622
               N        G +++SN C+E     +S     CNL S+NL+    ++  FD ++ A
Sbjct: 350 DSVINHWHTCPESGRINASNPCSEYMHLDNSS----CNLASLNLMKFLRDDDSFDAERFA 405

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +   +  +D  I       EK  ++   +R +G+G     + L      Y S     +
Sbjct: 406 KVVELVITAMDISICFADFPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSAGGRAL 465

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAM 738
           A      ++  A   S ELA   G Y  +  +            D+   +A + D +  +
Sbjct: 466 AGAITSLMTGTAYRRSAELAAVVGPYDGYARNAAPHQRVMRQHADASAAVAPLDDLDAPV 525

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +   W ++ +     G RN+    +APT TI  +    +  ++P    +  K  + G
Sbjct: 526 WAVANDTWADVVRLGARNGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGG 585

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------- 850
               + +  V    +R  + +  +  +  H    GN+   P  LK  H   F+       
Sbjct: 586 GSMQIVNGTVPRALKRLGYQDEQVEAVVAHIAEHGNVIDAP-GLKSAHYEVFDCAMGERS 644

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PM  +   +  Q WI  A S  + + E  + ++++ IY +AW +G+K     R     
Sbjct: 645 ISPMGHVRMMAAIQPWISGAISKTVNMPEDATVEEVEEIYFEAWKLGVKALAIYRDNCKV 704

Query: 910 SVEKSTL 916
               S  
Sbjct: 705 GQPLSAK 711


>gi|294338105|emb|CBJ93943.1| Probable phage ribonucleotide-diphosphate reductase alpha subunit
           [Campylobacter phage CP220]
          Length = 898

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 165/711 (23%), Positives = 307/711 (43%), Gaps = 53/711 (7%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + I+ ++G    F+++++   +  AC  L DV    ++ +    ++DG    D++ +L
Sbjct: 4   DTIHIVKNNGEREIFDAEKIHKHLHFACQNL-DVDIISIIKDARLKIFDGAKSVDIQDSL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S++  I ++ P+Y  V  R L +KLR+EV                   +       I+
Sbjct: 63  IKSAQEKISEDSPDYELVAGRLLNQKLRKEVYKQY-----------TPLDFKSQVKERIK 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +G     L+    D +L Y  + + YE D    Y  L  +Y +Y +  N   IE+PQ  F
Sbjct: 112 KGFYTEDLNAY-SDEELDYFGSLINYELDNELPYSALNQMYSKYLIKHNKKCIEVPQEVF 170

Query: 322 MRVAMGLALK-ETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + + M +    + E  K+ V+  Y LLS       TP +  + T + +  SC L    D 
Sbjct: 171 ILIPMAIFYNTDIEYRKKYVKLGYELLSQRKISLPTPIMNGARTSYKKFISCNLLNFGDS 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI-HGTNGKSQGVIPFLKVANDTAVAV 438
           +      L+          GLG + + +RGLGA +   +     G++P +K       A+
Sbjct: 231 VESFARGLEAVLKCTSAKSGLGINTSFIRGLGAPVGKPSRLDHTGMLPIVKAIESATSAL 290

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R GA    +  +H ++E F  L  + G    R    +    I   F+++      
Sbjct: 291 VQHG-RGGASNLSMPFFHYEIELFSQLGDSKGSLENRARHTDQTIIINKWFLEKALNKED 349

Query: 499 WTLFSPDEVS------DLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             LF  + V       DL+D  G  K F+  Y++Y  +         +KI++  L   ++
Sbjct: 350 IFLFHMNAVGNKDPKLDLYDALGDYKRFDELYKHYSAKVPNKS---KKKINSYDLLSLII 406

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
                TG  +I F D     S ++++   + +NLC EI++ S           E   C L
Sbjct: 407 NERMITGRVYIVFADNFVNSSFKENL---YMTNLCCEISVPSHSLDNYRGIPGELGTCIL 463

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           G+IN      + + D  K+A      VR LDN+IDI+   + + + S    R +G+G+  
Sbjct: 464 GNINFGH---SKESDIPKVAD---FLVRFLDNMIDISDFAMPEIEYSATKRRTLGIGVSN 517

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y + EA E  ++ ME   F+ +  S++LA+ERGA   +  S +    F 
Sbjct: 518 LFGYLAKSKLFYNTKEAREHINDLMELFYFNLVKTSIDLAKERGACELYNESFYSDNKFI 577

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            +   L A ++ E      ++L W+ L++ +   GMR+S+  A+ P     +     ++ 
Sbjct: 578 FERY-LEAGIKPEFK----TKLDWESLREELSKYGMRHSSLSAVPPAGNCISEDHTIETY 632

Query: 783 DPSYQN--LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + ++    +  + ++  +   +  + +    +   ++   IS+  Y++G +
Sbjct: 633 EGNFNLKDICNRESIDYNDLKIGWYDLKSPLKVPTFEGDSISNRFYYNGEV 683



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 842 KKIHATAFEID--PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD--FI---YRQAWL 894
           KK + TA+ +D      ++  S  Q+++DQ+ S N Y +    KK++   +   + + + 
Sbjct: 806 KKYYTTAWGVDFNNKDYLKLVSTIQRYVDQSISTNQYYNIVETKKVNIEDVIEEFIECFN 865

Query: 895 MGLKTTYYLRSRSATSVEKSTL 916
           +G+K+ YY   R+    +   +
Sbjct: 866 LGVKSLYYANFRTTDDADGDQV 887


>gi|86141198|ref|ZP_01059744.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831757|gb|EAQ50212.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
          Length = 852

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/732 (21%), Positives = 272/732 (37%), Gaps = 122/732 (16%)

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFF 321
           +   +      D               F  + L  ++  ++Y L   +G+  E  P    
Sbjct: 5   ITDPIAKTYTQDEAFEASLKY------FKGDDLAARVWVNKYALKDSDGNIYEKTPDDMH 58

Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ----LSSCFLTT 375
            R+A  +A  E       +  E ++L+ +F ++    +   +G  +P     LS+CF+  
Sbjct: 59  TRIAKEIARIEARYPNPMQEDEVFDLIKNFKYIVPQGSPM-AGIGNPYQVGSLSNCFVIG 117

Query: 376 VP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                D   GI    QE   L K  GG+G+D + +R  G+ +  +   S G++PF++  +
Sbjct: 118 NDGSSDSYGGIMKIDQEQVQLMKRRGGVGHDLSHIRPKGSAVKNSALTSTGLVPFMERYS 177

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           ++   V Q G R+GA+   +   H D E+F+D +   G    +    N +  I D FM+ 
Sbjct: 178 NSTREVAQDG-RRGALMLSVSINHPDAEDFIDAKMEQG----KVTGANVSVRIDDGFMQA 232

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  +T   P                                 ++I A  LW+K++  
Sbjct: 233 VKDHKPYTQKYP------------------------VFSPNPIKQKEIDAEKLWKKIVHN 268

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLL 608
            +++  P I F D     S       +     S+N C EI L         C L +INL 
Sbjct: 269 AWQSAEPGILFWDTIARESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLF 324

Query: 609 AHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA----------------- 646
           ++          F+++     I  A R++D++ID+    ++                   
Sbjct: 325 SYVEKPFTPEASFNFELFKKHIAKAQRIMDDIIDLELEKVDAILAKIDADPENDEVKNVE 384

Query: 647 -------KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  KK     R  G+G+      L  L I Y S    E + E  + I+  A  ASV
Sbjct: 385 RNLWLNIKKKAEEGRRTGIGITAEGDMLAALGIKYGSEAGNEFSVEIHKTIAVEAYRASV 444

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
             A+ERGA+  F         F                + R      ++L   +   G R
Sbjct: 445 YAAKERGAFPIFDSEREKDNPF----------------IQRIKNAD-EKLYYDMLEYGRR 487

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N   + IAPT T + +   +  I+P +  +Y  +  ++ +        V+E+   D W+E
Sbjct: 488 NIALLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDKEARVDFVDEVG--DSWEE 545

Query: 819 AMISDLKYHDG------------SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            ++   ++ +             S   ++ I        AT+ ++D +  +      QKW
Sbjct: 546 YVVFHHRFKEWMQINGIATDKNYSQEELDVIVAKSPYYQATSNDVDWLNKVRMQGAVQKW 605

Query: 867 IDQAQSLNLYLDEPSGKKLD-FIYRQAWLMGLKTTYYLRSRSATSV-----EKSTLKGVD 920
           +D + S+ + L     ++L   +Y +AW  G K     R  S + V     EK   +   
Sbjct: 606 VDHSISVTINLPNDVDEELVGQLYLEAWQAGCKGVTVYRDGSRSGVLISNDEKKNEEEDS 665

Query: 921 GKLNAVPVTDPN 932
             L A P   P 
Sbjct: 666 ETLTAFPTKRPQ 677


>gi|302554609|ref|ZP_07306951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472227|gb|EFL35320.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
          Length = 959

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 127/604 (21%), Positives = 232/604 (38%), Gaps = 38/604 (6%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQVFSFNSPVWFNVGTAQPQQVSACFILSVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E+F++ +    +  R   D      +  D       QNA  ++   DE   
Sbjct: 240 VLDVDHPDIEDFIETKVKEEEKIRVLRDAGYDMDLGGDDITSVQYQNANNSVRVNDE--- 296

Query: 510 LHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                   F  A E   +   RG +   V  ++ A +L+RK+    +    P I + D  
Sbjct: 297 --------FMKAVEQGGQFGLRGRMTGEVIEEVDAKSLFRKIAEAAWACADPGIQYDDTI 348

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLA 622
           N        G + +SN C+E     ++     CNL S+NL+    ++      F+ ++  
Sbjct: 349 NGWHTCPESGRITASNPCSEYMHLDNTS----CNLASLNLMKFLKDDGKGNQSFEAERFQ 404

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +   +  +D  I       +K  ++    R +G+G     + L      Y S     +
Sbjct: 405 KVVELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAL 464

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAM 738
           A      ++  A   S ELA   G Y  +  +            D+      + D +  +
Sbjct: 465 AGAITSLMTGTAYRRSSELAAVVGPYDGYARNADAHKRVMKQHFDANDKAVRMDDLDTPV 524

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +   W ++ +  +  G RNS    +APT TI       +  ++P    +  K  + G
Sbjct: 525 WAAASEAWQDVVRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGG 584

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EI 851
               + +  V +  +R  + E     +  H    GN+   P    +  ++   A     I
Sbjct: 585 GSMQIVNGTVPQALRRLGYLEEQNEAIVAHIAEHGNVIDAPGLKPEHYEVFDCAMGERAI 644

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            PM  +   +  Q WI  A S  + + E  + ++++ IY +AW +G+K     R      
Sbjct: 645 SPMGHVRMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGVKALAIYRDNCKVG 704

Query: 911 VEKS 914
              S
Sbjct: 705 QPLS 708


>gi|48843724|ref|YP_025104.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
 gi|44829131|gb|AAS47821.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
          Length = 547

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 172/587 (29%), Positives = 248/587 (42%), Gaps = 92/587 (15%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
             +    + Y       F+ S+P L NS T  P   SCF+  V DDL  I     E   L
Sbjct: 36  GDKTLETKLYRYSIKGWFVYSSPILSNSKTGLPI--SCFIMDVKDDLLHIIDHSVEMRWL 93

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG    W  +R           KS G +PF+   +   +A  QG  RKG+  AYL+
Sbjct: 94  SINGGGCAGYWGNIRAPCD-------KSCGPMPFMHTLDADVLAYKQGSTRKGSYAAYLD 146

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EF+++R   GD  R+  +++    I D FMK V  +  W L  P   S     
Sbjct: 147 ISHPDIAEFINMRTPVGDLNRKNLNLHHGVNISDNFMKAVENDLNWDLKDPCTGS----- 201

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                                 V   ISA+ LWR +L   F TG P++ F D  N +   
Sbjct: 202 ----------------------VKETISAMELWRSLLETRFRTGEPYLNFIDEANRKLHP 239

Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                   + SSNLC EI L +    TAVC L S+NL       ++D  K +  +   V 
Sbjct: 240 ALKAKNLKIKSSNLCNEIHLPTDETRTAVCCLASLNL------EKYDDWKDSDVVECCVT 293

Query: 631 VLDNVIDINCHTIE----KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           +L+NV+D+          KA  S    R+IGLG  G+   L    IP+ S  A+      
Sbjct: 294 MLNNVLDVFIEKAPPQLSKAINSAKLERSIGLGTAGWAYYLMKHQIPFESFNAISCTKII 353

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
              I   A+ AS  L +           L+ +                            
Sbjct: 354 FGNIKTKALKASKSLCK-----------LYGEP--------------------------- 375

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
               + +K  G+RN++ +AIAP +  + I   S SI+P   N YV    +G   +VN +L
Sbjct: 376 ----EDLKNYGVRNAHLLAIAPNSNTSCILNTSPSIEPISGNAYVHKTRAGTHLIVNPYL 431

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              L  R   D      +   DGS+ ++  + D  K +  TA+EID   LIE A+ RQK+
Sbjct: 432 KRVLIDRGKNDSETWDSIVNKDGSVQHLPFLTDREKLVFKTAYEIDQNVLIEQAALRQKY 491

Query: 867 IDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           I Q QSLNL+    + +K L  ++  AW +G K  YYLR+ ++ S E
Sbjct: 492 ICQGQSLNLFFPPHTQRKILHKVHFDAWKLGCKGLYYLRTAASKSSE 538


>gi|320008140|gb|ADW02990.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces flavogriseus ATCC 33331]
          Length = 967

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 140/664 (21%), Positives = 246/664 (37%), Gaps = 47/664 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 98  GLRQLIDR-IVKTYRKAGEDY---------NYFASPADAEVFEHELAYALLHQIFSFNSP 147

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 148 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 206

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 207 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIR 266

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK    A         R  
Sbjct: 267 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVEAGGKFGLRA---------RMT 317

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 318 GDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 377

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 378 TS----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGE 433

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +   +R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 434 NTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVGPY 493

Query: 709 SSFKG--SLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +        + +        +A   D+L   +   +   W ++ +     G RN+   
Sbjct: 494 DGYARNAEPHQRVMKQHSDANAVAVRMDDLDAPVWAAATEAWQDVIRLGAKNGFRNAQAS 553

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 554 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEA 613

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 614 IVAHIADHGNVVDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 672

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L E  + + ++ +Y +AW MG+K     R         S  K  + +  AV     ++  
Sbjct: 673 LPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSA-KTKEKEKEAVTAKAEDTIR 731

Query: 936 HSLG 939
            ++ 
Sbjct: 732 TAVE 735


>gi|312130785|ref|YP_003998125.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
 gi|311907331|gb|ADQ17772.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
          Length = 557

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 163/623 (26%), Positives = 261/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L+      E  +    R+    A +  + E     F  ++       S+P  
Sbjct: 22  QILNRGYLLNG-----ETVEGAIHRICSAAAKRLYKPE-LTEAFKEMIERGWMSLSSPIW 75

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD +  I   L E  M  K  GG    +  +RG G+ +   N
Sbjct: 76  ANMGTERGLPISCFNVHVPDSIESITHKLGEVIMQTKTGGGTSGYFGDLRGRGSAVTD-N 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D EEFL ++           +
Sbjct: 135 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLQIKNIGNP----IQN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A  +PD +M+ +                                             
Sbjct: 191 LFFAVCVPDYWMQEMIDGD----------------------------------------- 209

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSE 595
            +    LW K+L    + G P+I F D  N   PQ    H   +++SNLC+EI L SS++
Sbjct: 210 -MEKRQLWAKVLESRQQKGLPYIFFTDNVNRNKPQVYKDHNMRINASNLCSEIMLPSSAD 268

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K    ++ A+  LD V+          + +  A + 
Sbjct: 269 ESFICCLSSMNL------ELYDEWKDTKAVKLAIFFLDAVLQEFIAKTEDNYYLAAANRF 322

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    +P+   EA ++  E    +   A  A+ ELA   G   
Sbjct: 323 AKRHRALGLGVLGWHSLLQKRMLPFEGMEAKQLTSEIFRHMKTEADKATEELAMIYGEPE 382

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 383 LLKG------------------------------------------YGRRNTTTMAIAPT 400

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N +      G+F   N +L   L+++ + +E     +  ++
Sbjct: 401 TSSSAILGQTSPGIEPFSSNYFKAGLAKGNFMRKNKYLKALLEEKGIDNEETWRSIMLNN 460

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ +++ + +  K +  T  EI  + +I+ AS RQK++DQ QSLN+ +  E   K ++ 
Sbjct: 461 GSVQHLKELNEYEKSVFKTFKEISQLEIIQQASIRQKYVDQGQSLNINIPAELPIKDVNR 520

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+K+ YY RS+S + 
Sbjct: 521 LIIEAWKLGIKSLYYQRSQSVSK 543


>gi|282862309|ref|ZP_06271371.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
 gi|282562648|gb|EFB68188.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
          Length = 971

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 142/667 (21%), Positives = 242/667 (36%), Gaps = 46/667 (6%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 98  GLRQLIDR-IVKTYRKAGEDY---------NYFASPADAEIFEHELAYALLHQIFSFNSP 147

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 148 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 206

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 207 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIR 266

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK    A         R  
Sbjct: 267 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRA---------RMT 317

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 318 GDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 377

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 378 TS----CNLASLNLMKFLKDDGEGHQSFEAERFAKVVELVITAMDISICFADFPTQKIGE 433

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 434 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRSLAGAITSLMTGTSYRRSAELAAVVGPY 493

Query: 709 SSFKG--SLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +        + +         A   D+L   +   +   W ++ +     G RNS   
Sbjct: 494 DGYARNAEPHQRVMKQHSDANATAVRVDDLDSPVWAAATEAWQDVLRLGAKNGFRNSQAS 553

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 554 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQAEQIEA 613

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 614 IVAHIAENGNVIDAP-SLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 672

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L E  + + ++ +Y +AW MG+K     R         ST K  + K      T+     
Sbjct: 673 LPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSTKKWEEKKDEVTAKTEDTIRA 732

Query: 936 HSLGIPS 942
               +  
Sbjct: 733 AVEKVVE 739


>gi|50313262|ref|YP_053066.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 1]
 gi|132607|sp|P28846|RIR1_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|42795148|gb|AAS45905.1| large subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617005|gb|AAT67278.1| ribonucleotide reductase RR1 [Equid herpesvirus 1]
          Length = 790

 Score =  364 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 177/663 (26%), Positives = 285/663 (42%), Gaps = 68/663 (10%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ      + Y   + G RIE    FF+R+A        E+   A             
Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYI 191

Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              ++  L+    + +TP +   G     L+SC+L    V D    +   ++E   +   
Sbjct: 192 FKAYFTALAGQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCN 251

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G                 G S+GV+  LK+ +   +A+N  G+R   VC Y E WH
Sbjct: 252 RGGIGLSLQRFNTP-----PKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWH 306

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSD 509
            D+   L++R     D+  R  ++    W PDLF  R  +         WTLF  D  S 
Sbjct: 307 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLFD-DTASH 365

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L  +YGKEFE  YE  E+     +      I    +   ++     TG P++ FKD CN 
Sbjct: 366 LCHMYGKEFEEEYERLEQCGFGVD-----SIPIQDMAFIIVRSAVMTGSPFLMFKDACNK 420

Query: 570 RSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--------NNQFDYD 619
                    G +  SNLCTEI  ++   +  VCNL SINL    A           FD+ 
Sbjct: 421 HYHFDLRRKGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFA 480

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L     TA   +++++    +   K+++    +R++GLG+ G  +A  +L +  ASPEA
Sbjct: 481 ALGRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEA 540

Query: 680 VEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++  +  E +  +++ AS  L +     +  F+ S +  G  P DS            +
Sbjct: 541 RQLNKQIAERLLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYP---------GV 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+
Sbjct: 592 TLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 651

Query: 799 FTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGS-IGNIERIPDDLK-KIHATAFEIDP 853
               N  L+  ++    R+      +S L+    S +G    +P         TAFE D 
Sbjct: 652 VLRPNLLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQ 711

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRS 907
             LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + 
Sbjct: 712 RTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKK 771

Query: 908 ATS 910
           AT+
Sbjct: 772 ATN 774


>gi|255535949|ref|YP_003096320.1| ribonucleotide-diphosphate reductase subunit alpha
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342145|gb|ACU08258.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 551

 Score =  364 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 171/623 (27%), Positives = 267/623 (42%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q+L   Y L       E  +    R+    A K   K +    F  +++      S+P  
Sbjct: 16  QMLNRGYLLKG-----ETVKGAIERI-TTAAAKRLYKPELQPAFEEMITKGWISFSSPVW 69

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT+     SCF   VPD + GI   L E  M  K  GG    +  +R  G  +   N
Sbjct: 70  ANMGTQRGLPISCFNVHVPDHIEGITHKLGEVIMQTKIGGGTSGYFGELRNRGTAVTD-N 128

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++    D      +
Sbjct: 129 GKSSGAVSFMKLYDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK----DIGSPIQN 184

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           + T   +PD +M+ +                                             
Sbjct: 185 LFTGICVPDYWMQDMIDGD----------------------------------------- 203

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    +W ++L    + G P+I F D  N   PQ +      +++SNLC+EI L S++E
Sbjct: 204 -MDKRKIWARVLESRQQKGLPYILFSDNVNRNKPQVYKDLGMTINASNLCSEIMLPSNAE 262

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKS 649
           E+ +C L S+NL        +D  K  + ++ A+  LD V+          + +  A+  
Sbjct: 263 ESFICCLSSMNL------ELYDEWKDTNAVKLAIYFLDAVLSEFIEKTEGNYYLTGARNF 316

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+ S EA +    +   I   +++AS ELA   G   
Sbjct: 317 ALRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRQIKEQSLAASQELANIYGEPE 376

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           GMRN+  MAIAPT
Sbjct: 377 LLKG------------------------------------------YGMRNTTTMAIAPT 394

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E     +  + 
Sbjct: 395 TSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLQEKGLDNEETWRTIMLNH 454

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDF 887
           GS+ ++  + ++ K +  T  EI PM +I  A++RQ++IDQAQSLNL +      K +++
Sbjct: 455 GSVQHLNELTEEEKAVFKTFREISPMEIISQAAQRQQYIDQAQSLNLQIPSTMPVKDVNY 514

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +Y +AW  G+KT YY RS S + 
Sbjct: 515 LYIEAWKKGVKTLYYQRSSSVSK 537


>gi|216905874|ref|YP_002333502.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 9]
 gi|216410028|dbj|BAH02446.1| large subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 790

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 174/663 (26%), Positives = 285/663 (42%), Gaps = 68/663 (10%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ      + Y   + G RIE    FF+R+A        E+   A             
Sbjct: 132 LGLQSALKYEEMYLAKMRGGRIESMGQFFLRLATTATHYTMEQPAMARVVVSGEVGWTYI 191

Query: 340 -VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKY 396
              ++  L+    + +TP +   G     ++SC+L    V D    +   ++E   +   
Sbjct: 192 FKAYFTALAGQVIIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAMLALMEEAGPILCN 251

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G                 G S+GV+  LK+ +   +A+N  G+R   VC Y E WH
Sbjct: 252 RGGIGMSLQRFNTP-----PKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWH 306

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSD 509
            D+   L++R     D+  R  ++    W PDLF  R  +         WTLF  D  S 
Sbjct: 307 ADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYKRYLDGESGVMWTLFD-DTASH 365

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L  +YGKEFE  YE  E      +      I    +   ++     TG P++ FKD CN 
Sbjct: 366 LCHMYGKEFEEEYERLELCGFGVD-----SIPIQDMAFIIVRSAVMTGSPFLMFKDACNK 420

Query: 570 RSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--------NNQFDYD 619
                      +  SNLCTEI  ++   +  VCNL SINL    A           FD+ 
Sbjct: 421 HYHFDLRRKSAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFA 480

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L     TA   +++++  + +   K+++    +R++GLG+ G  +A  +L +  ASPEA
Sbjct: 481 ALGRAAATATIFVNSMMRASTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEA 540

Query: 680 VEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++  +  E +  +++ AS  L +     +  F+ S + +G  P D+            +
Sbjct: 541 RQLNKQIAERLLLNSMKASATLCRLGMQPFKGFEDSKYSRGELPFDAYP---------GV 591

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +R  W  L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+
Sbjct: 592 TLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGE 651

Query: 799 FTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGS-IGNIERIPDDLK-KIHATAFEIDP 853
               N  L+  ++    R+      +S L+    S +G    +P         TAFE D 
Sbjct: 652 VLRPNVLLMRTIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQ 711

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRS 907
             LI+  + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + 
Sbjct: 712 KTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKK 771

Query: 908 ATS 910
           AT+
Sbjct: 772 ATN 774


>gi|297156720|gb|ADI06432.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 964

 Score =  363 bits (932), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 141/668 (21%), Positives = 256/668 (38%), Gaps = 46/668 (6%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYN 344
             + I+  +YF    G   R    +    RV           G      + E    E   
Sbjct: 73  NAVNIVTSKYFRGAVGSPERESSLKQLIDRVVRTYRQAGEDNGYFASPADAEIFDHELTY 132

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G +
Sbjct: 133 ALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLN 192

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F
Sbjct: 193 LSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAF 251

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           ++ +    +  R   D   A +  DL  + +T        + +    ++D + K  E   
Sbjct: 252 IEAKVKEEEKIRALRD---AGFDMDLGGEDITSVQY---QNANNSVRVNDTFMKAVESGS 305

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +   R    GE  +  ++ A +L+RKM    +    P I + D  N        G + +S
Sbjct: 306 KFGLRARMSGE--ILEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTSPETGRITAS 363

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID 637
           N C+E     +S     CNL S+NL+    +++     FD ++ A  +   +  +D  I 
Sbjct: 364 NPCSEYMHLDNSS----CNLASLNLMKFLDDDEAGHQRFDAERFAKVVELVITAMDISIC 419

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 +K  ++    R +G+G     + L      Y S     +A      ++  +   
Sbjct: 420 FADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRR 479

Query: 698 SVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753
           S ELA   G Y  +  +            D+ G    + D +  +   +   W ++ +  
Sbjct: 480 SAELAAVVGPYEGYARNADAHKRVMKQHSDANGAAKRMDDLDTPVWAAATEAWQDVIRLG 539

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  G RN+    +APT TI  +    +  I+P    +  K  + G    + +  V +  +
Sbjct: 540 EKNGFRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNNTVPKALK 599

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQK 865
           R  +    +  +  H    GN+   P  LK  H   F+       I PM  +   +  Q 
Sbjct: 600 RLGYQPEQVEAIVAHIAEHGNVIDAP-GLKSEHYEVFDCAMGDRSISPMGHVRMMAAAQP 658

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++  A S  + + E  + ++++ IY + W +GLK     R         S  K  +    
Sbjct: 659 FLSGAISKTVNMPESATVEEIEEIYFEGWKLGLKALAIYRDNCKVGQPLSAKKKEEKPAE 718

Query: 925 -AVPVTDP 931
            A P  + 
Sbjct: 719 QAEPEAEK 726


>gi|221105132|ref|XP_002165620.1| PREDICTED: similar to ribonucleotide-diphosphate reductase large
           subunit, putative, partial [Hydra magnipapillata]
          Length = 416

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 147/392 (37%), Positives = 213/392 (54%), Gaps = 12/392 (3%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             R+I A  LWR +L    ETG P+I +KD  NI+S Q+++G + SSNLC EI   S   
Sbjct: 1   YVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLGTIRSSNLCAEIIQYSDEH 60

Query: 596 ETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           ETAVCNL SI L      N     +++DKL    R AVR LD +ID N +  EK K+SN 
Sbjct: 61  ETAVCNLASICLPMFIETNNNVKIYNFDKLGKVCRVAVRNLDKIIDRNYYPTEKTKRSNL 120

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G  G     +++   +++  A E+  +  E I F  I  S ELA++ G YS+F
Sbjct: 121 RHRPMGIGAQGLADVYNIMGFGFSTHSAYELNKKIFETIYFACIDESKELAKKFGQYSTF 180

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS   QG       G      D+L M       W  L   VK  G+RNS   A+ PTA+
Sbjct: 181 KGSPASQGQLQFHMWGF---NEDQLLMGF----DWKTLISEVKKYGLRNSLLTALMPTAS 233

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G S+ I+P   N++ +S ++G+F V+N  L+ +L   +LW++ M   +   +GS+
Sbjct: 234 TSQIMGNSECIEPYMSNIFKRSTLAGEFIVINKHLMKDLIHLNLWNDDMRKRIIIENGSV 293

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NIE IP+ LK ++ TAFE   M ++  ++ R  +IDQ+QSLNL++ EP    L     +
Sbjct: 294 QNIELIPEKLKNVYETAFETKQMHIVRQSADRGIFIDQSQSLNLFMAEPDFDVLTSALFE 353

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
           +  +G KT  YY RS  A +     +   D K
Sbjct: 354 SHDIGNKTGMYYYRSLPAINPISFGIDIEDIK 385


>gi|297191628|ref|ZP_06909026.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719369|gb|EDY63277.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 964

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 137/639 (21%), Positives = 238/639 (37%), Gaps = 46/639 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 95  GLKQLIDR-IVKTYRKAGEDY---------NYFASPADAEIFEHELAYALLHQIFSFNSP 144

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 145 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 203

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 204 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIR 263

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK    A         R  
Sbjct: 264 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRA---------RMT 314

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 315 GDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMHLDN 374

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++    +   +  +D  I       +K  +
Sbjct: 375 TS----CNLASLNLMKFLKDDGKGNQSFDVERFTKVVELVITAMDISICFADFPTQKIGE 430

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +   +R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 431 NTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPY 490

Query: 709 SSFKG--SLWDQGVFPIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +        + +        +A   D+L   +   +   W ++ +  +  G RN+   
Sbjct: 491 DGYARNAEPHKRVMKQHADANTVAVRMDDLDSPIWAAATEAWQDVIRLGEKNGFRNAQAS 550

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 551 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEA 610

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 611 IVAHIADHGNVIDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 669

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           L E  + + ++ +Y +AW MG+K     R         S
Sbjct: 670 LPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 708


>gi|320450942|ref|YP_004203038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
 gi|320151111|gb|ADW22489.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
          Length = 586

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/636 (23%), Positives = 259/636 (40%), Gaps = 94/636 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           F  + L   +   RY L    G  +E  P+  + R+  G+   E    +   EF  L S 
Sbjct: 18  FQGDELRASVFLHRYALKDPEGRLLEATPEEMWQRLVQGVTRVEKGATQ---EFSWLFSD 74

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           F F+     LF  G  R   L +C+   +  D + GI   L E A    Y GG+G++   
Sbjct: 75  FRFVPGGRILFGLGNWRRSTLFNCYYIPIREDSVKGITRFLDEAARTFAYGGGVGSNADA 134

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +     +S G + F+++ +  A  +   G R+GA+       H D+ +FL ++
Sbjct: 135 LRPKGAKVGNAGMESSGAVSFMELFSTLAGVMGASGGRRGALMLTFSDTHPDLLDFLQVK 194

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
            +   +R R    N +    D F++    +  WTL                         
Sbjct: 195 TDP--ERSRVRHANISLRATDAFLQAALADEPWTLSFT---------------------- 230

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLC 585
                    + R I A   W  ++   +++  P + F D     +  Q+ G+ V   N+C
Sbjct: 231 ----TPREHITRTIRAKEAWDLLVEAAWQSAEPGLLFWDRVRTWATAQYGGMEVEGVNVC 286

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVID--I 638
            E+ +    E    CNLGS+NL+A          + DY  L    R AVR LD V+D   
Sbjct: 287 GEVPM----EPYGACNLGSLNLVAFVQEPFTDRARLDYAGLEEATRLAVRFLDAVVDLGK 342

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N H +   ++++   R +GLG+MG    L +L +PY + E++  A+E M  I   A   S
Sbjct: 343 NRHPLRAQREASLRSRRVGLGIMGLADTLAMLGLPYGAEESLTFAEEVMRRIKEAAYWES 402

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LA++RG++ +F                     ++ +       LP + L + V+  G+
Sbjct: 403 TRLARQRGSFPAFD-------------------PKEHIKSPFIQSLP-EALIQAVEK-GL 441

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN+  ++IAPT +I+ + GV+  I+P +   Y++      F   +  L    ++R     
Sbjct: 442 RNAALLSIAPTGSISILAGVTSGIEPIFALTYLRHAGGQVFLAEHPLLKRYRRERGG--- 498

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                             +PD       TA  + P   +   +  Q+ +DQ+ S  + L 
Sbjct: 499 -----------------EVPD-----WPTAHTVAPFQRVRLQATLQRHVDQSISSTVNLP 536

Query: 879 EPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             + K+ ++ ++  AW  G K     R  S   V +
Sbjct: 537 RETPKEVVENLFLTAWKEGCKGITVFREGSREEVIE 572


>gi|269986513|gb|EEZ92798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 756

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 171/648 (26%), Positives = 281/648 (43%), Gaps = 95/648 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  +I Y++Y L    G+R E  P   + R++  LA  E + +K+ +E  FY LL
Sbjct: 12  FDNDELRSRIFYEKYSLSDLEGNRTEKTPIEMWKRISRELASVEKDDKKKDIENNFYRLL 71

Query: 347 SSFHFMCSTPTLFNSGTRHPQ--LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             F F+     LF +G  H    L+   L    D L  I    +E A    Y GG+G D 
Sbjct: 72  EDFKFVPGGRILFGAGANHKATLLNCHHLPITKDSLEAIHDTAKEMARTYSYGGGVGIDI 131

Query: 405 TPVRG-LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           + VR    +            + F+K+ + T   + Q G R+GA    L+  H D+E F+
Sbjct: 132 SIVRPERSSSGIMQQDFRLASVSFMKLYSITTGIIGQTG-RRGAWMITLDVTHPDIESFV 190

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            ++K    D++     N +  + D FM  V  +  +TL   +E                 
Sbjct: 191 TIKK----DKKSVRYANISVKVYDDFMDAVENDKIFTLHFKNE----------------- 229

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--VHS 581
                    +++  ++I A+ LW+K +     TG P I F D     SP ++     +  
Sbjct: 230 ---------KVEFKKEIKALDLWKKRIDTAVNTGDPGIMFWDRMKSESPTEYDEKMAIKG 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVI 636
           +N C+E  L    E    C+LG+INL     N      + D++ L  T+R  VR LDNV+
Sbjct: 281 TNPCSEQPL----ENYGACDLGAINLDYFVKNQCTDKAEVDWENLDKTVRYGVRFLDNVL 336

Query: 637 DI--NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           D   N H +++        R IGLG+MG  + L  +++ Y S +A+E  D  M+ I   A
Sbjct: 337 DYSYNRHALKEQADETVYARRIGLGIMGLANMLISMNLRYDSDKAIEFVDSLMKKIKETA 396

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
              S  LA E+G++ +F                        L  N   RL   +L  ++ 
Sbjct: 397 YDESSNLAVEKGSFPAFVAEK-------------------HLQRNFVKRLD-KKLLDKIS 436

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELK 811
             G+RN+  + +APT +I+++ GVS  I+P     Y + + S   G F V++ F+   + 
Sbjct: 437 KNGLRNACILTVAPTGSISSMAGVSGGIEPICALSYTRRSESLSEGKFEVLDPFVKRYMD 496

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +                  I +   +P+    +  TA +IDP + ++  +  QK ID + 
Sbjct: 497 KFK----------------IRDKSTLPE----LFVTAHKIDPFFRVKMQATIQKHIDSSI 536

Query: 872 SLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           S  + L   +  + +D IYR AW +G K+    R  S   + K+T + 
Sbjct: 537 SSTVNLSADTDAETVDKIYRYAWKLGCKSITVYREGSKDDILKATDEK 584


>gi|238059797|ref|ZP_04604506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
 gi|237881608|gb|EEP70436.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
          Length = 611

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 167/646 (25%), Positives = 253/646 (39%), Gaps = 90/646 (13%)

Query: 313 RIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           RIE       RVA GL   E E           A  F  L++   F  S   L N GTR 
Sbjct: 30  RIESVDDLLDRVATGLGAVEREYGADESTARVWAARFRALMAENRFWPSGRILNNCGTRQ 89

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGV 424
            QL+SCF+  V DDL  IF  L+  A   +  GG G D TP+R  GA I       S G 
Sbjct: 90  GQLASCFVLPVEDDLGAIFDTLKLAASCHRTGGGTGFDLTPLRERGAPISTAEAAGSSGP 149

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + +L + +     V QGGK +GA  A L   H DV EF+D +   G    R  + N +  
Sbjct: 150 VSWLHLFDAETGVVMQGGKMRGANLASLSVRHPDVFEFIDAKAVVG----RLANFNLSVT 205

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ +       L SP                              +  R++ A  
Sbjct: 206 VDDAFMRTLIDGGEIDLVSP---------------------------VGGRPRRRVPAAE 238

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +WR++    + TG P + F D  N  +P    +G + ++N C E TL      T    LG
Sbjct: 239 IWRRISAQAWRTGDPGLLFTDMINRANPLLDRLGPIRTTNPCGEQTLYPYEPST----LG 294

Query: 604 SINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL A    + + D  +L  T+  AVR+LDN ID + +   +       +R +GLG+MG
Sbjct: 295 SVNLRAMTGPDGRLDTARLERTVEDAVRLLDNSIDASHYPDPRITAMARGNRRLGLGVMG 354

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F   L  L + Y S  A+ + DE    I   A + +  LA ERG + +F  + +D     
Sbjct: 355 FADLLIALGVRYDSTRALAVVDEVGGRIRAVAEATTRRLAAERGTFPNFDPARFDA---- 410

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                              +RN     IAPT TI+ + G S  I
Sbjct: 411 ----------------------------------PVRNCAVTTIAPTGTISMVAGCSSGI 436

Query: 783 DPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +P +  ++ K+  + G  + V+  L  ++      D      L            +P+ +
Sbjct: 437 EPRFAPIWRKNVLVDGGVSYVDEDLAADVCAHGGVDPEQARRLIRERPV--TELPMPEPV 494

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
           +  +  A ++   W +  A++ Q+ ID A S  + L    S   +  +   +W +G K  
Sbjct: 495 RDRYRYAHDVPGEWHVRIAAQWQRHIDNAVSKTVNLPRDCSVDDVAEVLTASWRLGCKGV 554

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS---STHSLGIPSS 943
              R  S     +       G     P+         T +  +P S
Sbjct: 555 SVYRQGSREQDLQEVAGARTGTDRPTPLAGDAGTGIDTGTGAVPQS 600


>gi|302537351|ref|ZP_07289693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
 gi|302446246|gb|EFL18062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
          Length = 960

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 141/640 (22%), Positives = 242/640 (37%), Gaps = 46/640 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E    F             + E    E    L    F  ++P
Sbjct: 96  GLKQLIDR-IVKTYTKAGEDYDYF---------ASPADAEIFEHELTYALLHQIFSFNSP 145

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 146 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 204

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE+F+  +    +  R
Sbjct: 205 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEDFIATKVKEEEKIR 264

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  G EF +          R  
Sbjct: 265 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVE-NGTEFGLR--------ARMT 315

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  K+ A AL+RK+    +    P I +    N        G + +SN C+E     +
Sbjct: 316 GEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCPESGRITASNPCSEYMHLDN 375

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++ A  +   +  +D  I       +K  +
Sbjct: 376 TS----CNLASLNLMKFLNDDGKGNQSFDAERFAKVVELVITAMDISICFADFPTQKIGE 431

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 432 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITSLMTGTAYKRSAELAAIVGPY 491

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+  +     D + A+   +   W ++ +  +  G RN+   
Sbjct: 492 DGYARNADSHKRVMKQHADANAVAPRTEDLDNAIWAAATEAWQDVLRLGEKNGFRNAQAS 551

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 552 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMGYLEEQIEA 611

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I PM  +   +  Q WI  A S  + 
Sbjct: 612 IVSHIAEHGNVVDAP-GLKTEHYEVFDCAMGERSISPMGHVRMMAAIQPWISGAISKTVN 670

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E  + ++++ IY +AW +G+K     R         S 
Sbjct: 671 MPESATVEEIEEIYFEAWKLGVKALAIYRDNCKVGQPLSA 710


>gi|325281019|ref|YP_004253561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
 gi|324312828|gb|ADY33381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
          Length = 846

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 272/711 (38%), Gaps = 113/711 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKETEKE 336
               + L Y   F  + L  ++  ++Y L  + G+  E  P     R+A  ++  E    
Sbjct: 16  EAFQSSLNY---FNGDELAARVWVNKYALKDSYGNIFEKNPDDMHRRLAKEISRIENRYP 72

Query: 337 KRAVE--FYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQ 388
               E   + +L  F ++       T   +  +   LS+CF+       D   G+    Q
Sbjct: 73  NPLSEDTIFEVLRDFKYIVPQGGPMTGIGNEFQIASLSNCFVIGNEGPSDSYGGVMKIDQ 132

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+
Sbjct: 133 EQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGAL 191

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+ V  +  +    P    
Sbjct: 192 MLSVSINHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVINDEEYEQKYP---- 243

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                   E K  ++I+A  LW K++   +++  P I F D   
Sbjct: 244 --------------------VYSDEPKNRKQINARQLWNKIVHNAWKSAEPGILFWDTII 283

Query: 569 IRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619
             S             S+N C EI L         C L +INL ++  N       FD+ 
Sbjct: 284 RESVPDCYADKGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVQNPFTKGAFFDFP 339

Query: 620 KLASTIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRA 655
                +  A R++D++ID                        +     EK K+     R 
Sbjct: 340 LFKKHVAIAQRIMDDIIDLELEKIDAILDKVHEDPESEEVKGVEIRLWEKIKQKAKEGRR 399

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
            G+G+      L  L + Y S EA++ A +  + ++  A  ASV LA++RG++  +    
Sbjct: 400 TGVGITAEGDMLAALGLRYGSEEAIDFAVDIQKTLAVEAYRASVHLAKDRGSFKIYDTRR 459

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            +   F    I  L E   ++                +   G RN  C+ IAPT T + +
Sbjct: 460 EENNPF----IKRLREADPDMY-------------AEMVKYGRRNIACLTIAPTGTTSLM 502

Query: 776 CGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN- 833
              +  I+P +  +Y  +  ++ +   V+   V+E    D ++E ++   K+ D    N 
Sbjct: 503 TQTTSGIEPVFLPVYKRRRKVNPNDQNVHIDFVDESG--DSYEEFIVFHHKFADWMKANG 560

Query: 834 -----------IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
                      I+ +        AT+ +ID +  +    + QKW+D + S+ + L     
Sbjct: 561 YDTTKCYTDEEIDELVAQSPYYKATSNDIDWVAKVRMQGQVQKWVDHSISVTVNLPSDVT 620

Query: 883 KKLD-FIYRQAWLMGLKTTYYLRSRSATSVEKSTL-KGVDGKLNAVPVTDP 931
           ++L   +Y +AW  G K     R  S   V  S   K      N +P   P
Sbjct: 621 EELVGNLYIEAWKSGCKGCTVYRDGSRAGVLVSNKDKKQTTSPNEMPAKRP 671


>gi|21224150|ref|NP_629929.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           coelicolor A3(2)]
 gi|81816916|sp|O69981|NRDJ_STRCO RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|2995313|emb|CAA18341.1| ribonucleotide reductase [Streptomyces coelicolor A3(2)]
 gi|68449794|emb|CAJ01782.1| vitamin B12-dependent ribonucleotide reductase (class II)
           [Streptomyces coelicolor A3(2)]
          Length = 967

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 128/636 (20%), Positives = 232/636 (36%), Gaps = 34/636 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E+F+  +    +  R   D      +  D       QNA  ++   D    
Sbjct: 240 ILDVDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMK 299

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                G +F +          R   +V  ++ A AL+RKM    +    P I + D  N 
Sbjct: 300 AVQ-DGGKFGLTS--------RMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTINA 350

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G ++ SN C+E     ++     CNL S+NL+    ++      FD ++ +  
Sbjct: 351 WHTCPESGRINGSNPCSEYMHLDNTS----CNLASLNLMKFLKDDGKGNQSFDAERFSKV 406

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 407 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 466

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNR 740
                ++  +   S ELA   G Y  +  +               A+       +  +  
Sbjct: 467 AITSLMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWA 526

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +  +  G RNS    IAPT TI       +  ++P    +  K  + G  
Sbjct: 527 AATEAWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGS 586

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H    GN+   P    +  ++   A     I  
Sbjct: 587 MQIVNGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISA 646

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R        
Sbjct: 647 MGHVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQP 706

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            S             +T+   +     +        
Sbjct: 707 LSAKTKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742


>gi|257215692|emb|CAX82998.1| ribonucleotide reductase M1 [Schistosoma japonicum]
          Length = 384

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 196/370 (52%), Gaps = 15/370 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
            K+ ++  DG   + + +++   +   C GL +  +    V       +Y G++  +L+ 
Sbjct: 15  DKIYVVKRDGRSEAIHCEKITKRIRALCYGLNESYIDVDAVTKRVVSGLYPGVTTVELDN 74

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               +  ++I K   YA + AR  +  L +E         +      ++ LY     R  
Sbjct: 75  LAAETCASMITKHHEYAILAARLAVSNLHKET--------KSRFSDVVEDLYGYINPRTK 126

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +          + +  +   L N + Y+RD+ + Y G + L   Y L ING   E PQ  
Sbjct: 127 KHSPLVSEDLRNFVRENAERLDNAIDYQRDYTYNYFGFKTLERSYLLKINGKVHERPQHM 186

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRV++G+   + E    A+E YNL+S   F  ++PTLFNSGT  PQLSSCFL T+  D 
Sbjct: 187 LMRVSVGIHTSDIE---SAIETYNLMSEKWFTHASPTLFNSGTPKPQLSSCFLITMKDDS 243

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+V N TA  V+
Sbjct: 244 IEGIYDTLKECAIISKNAGGIGVNVHNIRSLGTYIAGTNGESNGLVPMLRVFNSTARYVD 303

Query: 440 Q-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           Q G KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDLFM+RV  N  
Sbjct: 304 QGGNKRPGAFAIYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVESNDK 363

Query: 499 WTLFSPDEVS 508
           WTL  P E  
Sbjct: 364 WTLMDPHECP 373


>gi|300784301|ref|YP_003764592.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299793815|gb|ADJ44190.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 937

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 132/623 (21%), Positives = 236/623 (37%), Gaps = 36/623 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 115 GYFAAPQDLEIFEHELTWMLLHQVFSFNSPVWFNVGTPSKQQVSACFILAVDDTMESILN 174

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 175 WYREEGLIFKGGSGAGLNLSRIRSS-KELLTSGGTASGPVSFMRGADASAGTIKSGGATR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+  +     + ++   +  A +  DL    ++    QNA  +
Sbjct: 234 RAAKMVVLDVDHPDIEEFIQTKAR---EEKKIKVLRDAGFDMDLSGADISSVQYQNANNS 290

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  G EF +          R   +V  +  A  L+R M    +E   P 
Sbjct: 291 VRVTDEFMQAVE-NGTEFGLR--------ARLTGEVIDRTDAKKLFRTMAQAAWECADPG 341

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           I +    N        G + +SN C+E     +S     CNL S+NLL        FD  
Sbjct: 342 IQYDGTINDWHTCPESGRITASNPCSEYMHLDNSS----CNLASLNLLKFVTPEGTFDAP 397

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             A  +   +  +D  I       E    +    R +G+G     + L  L   Y S   
Sbjct: 398 LFARAVEFVITAMDVSICFADFPTEPIADTTRKFRQLGIGYANLGALLMALGHAYDSEGG 457

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      ++  +   S E+A+  GAY  +  +                 VR    ++
Sbjct: 458 RALAAAITSLMTGVSYRRSAEMARVVGAYEGYARNAEAHQRVMRKHAAANELVRTYHSND 517

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS- 793
            A+   +   W +  +     G RN+    +APT TI  +    +  I+P +  +  K  
Sbjct: 518 AAVRALATEEWQKGIEIGAKHGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKL 577

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA--- 848
              G   +VN  +   L+      E + + ++Y   +G + +   +  +  ++   A   
Sbjct: 578 VGGGSMQIVNQTVPRALEALGYLTEQVEAIVEYVAQNGHVVDAPGLRPEHYEVFDCAVGE 637

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + + E  + ++++ IY Q W +GLK     R   
Sbjct: 638 RSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEEVEEIYFQGWKLGLKALAIYRDNC 697

Query: 908 ATSVEKSTLKGVDGKLNAVPVTD 930
                 ST K          V +
Sbjct: 698 KVGQPLSTAKKESAAAEPEKVVE 720


>gi|256784770|ref|ZP_05523201.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289768657|ref|ZP_06528035.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289698856|gb|EFD66285.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
          Length = 967

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 127/636 (19%), Positives = 231/636 (36%), Gaps = 34/636 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E+F+  +    +  R   D      +  D       QNA  ++   D    
Sbjct: 240 ILDVDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMK 299

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                G +F +          R   +V  ++ A AL+RKM    +    P I + D    
Sbjct: 300 AVQ-DGGKFGLTS--------RMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTIKA 350

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G ++ SN C+E     ++     CNL S+NL+    ++      FD ++ +  
Sbjct: 351 WHTCPESGRINGSNPCSEYMHLDNTS----CNLASLNLMKFLKDDGKGNQSFDAERFSKV 406

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 407 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 466

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNR 740
                ++  +   S ELA   G Y  +  +               A+       +  +  
Sbjct: 467 AITSLMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWA 526

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +  +  G RNS    IAPT TI       +  ++P    +  K  + G  
Sbjct: 527 AATEAWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGS 586

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H    GN+   P    +  ++   A     I  
Sbjct: 587 MQIVNGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISA 646

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R        
Sbjct: 647 MGHVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQP 706

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            S             +T+   +     +        
Sbjct: 707 LSAKTKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742


>gi|270339460|ref|YP_003331540.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
 gi|254940176|gb|ACT88319.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
          Length = 786

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 170/658 (25%), Positives = 290/658 (44%), Gaps = 63/658 (9%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----------- 341
           LGLQ      + Y  ++    +E    FF+R+A   A   T + ++A+            
Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192

Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398
            F+  LS    + +TP +   G     L+SC+L +  + D    I   +++ A +    G
Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G               +   ++GV+P LK+ +   +A+N   +R   VC Y+E WH D
Sbjct: 253 GIGICLQNFNK-----KLSKECTKGVLPLLKLLDSMTIAINSDSERPTGVCIYVEPWHAD 307

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLH 511
           +   L++R     D+  R  ++ +  W PDLF  R  ++ G      WTLF  D  S L 
Sbjct: 308 IRSILNMRGMLASDENSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFD-DAASHLS 366

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            LYGKEF   YE  E      +      +    +   ++     TG P++ FKD CN   
Sbjct: 367 KLYGKEFNEEYERLEAAGMGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHY 421

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANNQFDYDKLAST 624
                G  + +SNLCTEI   ++  +  VCNL SINL       AH  +  F    L   
Sbjct: 422 HFDTRGDALTTSNLCTEIIQKATDTKHGVCNLISINLPQCLRRIAHDQSLYFSIPLLIRA 481

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             TA   ++ ++       E A +    +R++GLG+ G  +    L +   S EA  +  
Sbjct: 482 AYTATIFVNAMMRAGNFPTEAAMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNR 541

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           + +E +   AI AS  L +     + +F+ S++ +G+ P D+      +  +        
Sbjct: 542 QILESLLLGAIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFKK------- 594

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +L+  +   G+ NS  +A+ PT + + +   S+   P + NL+ K   +G+    N
Sbjct: 595 --WQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPN 652

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-----HATAFEIDPMWLIE 858
             L+  +++    + A +S +   + +  +I     DL          TAFE D   LI+
Sbjct: 653 LQLMRTIRRLFPRECARLSVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLID 712

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATS 910
             + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + AT+
Sbjct: 713 MCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 770


>gi|29829003|ref|NP_823637.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           avermitilis MA-4680]
 gi|81720079|sp|Q82KE2|NRDJ_STRAW RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|29606109|dbj|BAC70172.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces avermitilis MA-4680]
          Length = 964

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 243/655 (37%), Gaps = 46/655 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            L+ L DR  +       E  + F             + E    E    L    F  ++P
Sbjct: 94  SLRQLIDR-IVKTYRKAGEDYKYF---------ASPADAEIFEHELAYALLHQIFSFNSP 143

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 144 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 202

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F++ +    +  R
Sbjct: 203 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIETKVKEEEKIR 262

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   D      +  GK              R  
Sbjct: 263 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVEEGGKFG---------LTSRMT 313

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 314 GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMHLDN 373

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 374 TS----CNLASLNLMKFLKDDGKGRQSFEVERFAKVVELVITAMDISICFADFPTQKIGE 429

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 430 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPY 489

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+ G+   V D +  +   +   W ++    +  G RN+   
Sbjct: 490 DGYARNAQPHQRVMKQHSDANGVAVRVDDLDTPIWAAATEAWQDVLHLGEKNGFRNAQAS 549

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 550 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 609

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 610 IVAHIAENGNVIDAP-GLKHEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 668

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           L E  + + ++ +Y +AW MG+K     R         S  K    K      T+
Sbjct: 669 LPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKKKETEKAEVTAKTE 723


>gi|311694338|gb|ADP97211.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 714

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 137/659 (20%), Positives = 256/659 (38%), Gaps = 62/659 (9%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
           +   + I + +Y L    G  ++    A + RVA  LA  E +  + +    F   L + 
Sbjct: 17  QEASIDIWHSKYQLKTKTGEPVDKDINATYERVAKALAEVENKSVRTQHMKNFIWALQNG 76

Query: 350 HFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               +     N+G          ++     TV D +  I     E  +  K   G+G ++
Sbjct: 77  AI-PAGRITSNAGAEAHKPATSTINCTVSGTVQDSMNDILEKNHEAGLTLKAGCGIGYEF 135

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+ 
Sbjct: 136 STLRPKGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVHHPDVIDFIQ 195

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD----------LY 514
            ++  G    R    N +  I + F++ V  +A W L  P    ++ D            
Sbjct: 196 AKREDG----RLRQFNLSLLITEDFIEAVRNDADWHLSFPVTKKEVEDEKLDLSDESQFV 251

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            ++F            +   +++R + A  +W  ++T  ++   P     D  N  +   
Sbjct: 252 YRDFPEQKGYVVNGEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNW 311

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAV 629
               + ++N C E  L         C LGS+NL             F+Y+K    +    
Sbjct: 312 FCEDIRATNPCGEQPLPPYGS----CLLGSVNLTMFVDYPFTDKASFNYEKYRKVVAIFT 367

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   + + +      R  G+G++G  S L +L +PY S E+V+  +E +  
Sbjct: 368 RMLDNVVEINGLPLAEQRHEITYKRRHGMGILGLGSTLAMLRMPYGSEESVQFTEEVVRE 427

Query: 690 ISFHAISASVELAQERGAYS----SFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++      S+ LA+E+G        F+     L        D   L  +V+  +   + S
Sbjct: 428 MAVEGWRQSLALAEEKGVAPIMDDEFEITPKMLTKCPQLSEDGYKLGDKVKGRILHAKYS 487

Query: 743 RLPWD------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           +   +      +L + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 488 KYMQEIAKVEPKLVEELAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNI 547

Query: 795 MSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ F    L  R             + G++   E     L     T+ ++
Sbjct: 548 IREGRKTKEKVDVFSFELLAYR----------HMVNPGAMPFSEDEDKKLPAYFTTSDDV 597

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            P   ++  +  QKW+D + S    +    + +    IY  A+  GLK     R     
Sbjct: 598 TPSQHVDIQAAAQKWVDSSISKTANVPTDFAYQDFKDIYLYAYDKGLKGCTTFRFNPEA 656


>gi|325989610|ref|YP_004249309.1| putative ribonucleoside-diphosphate reductase [Mycoplasma suis
           KI3806]
 gi|323574695|emb|CBZ40351.1| probable ribonucleoside-diphosphate reductase [Mycoplasma suis]
          Length = 528

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/554 (24%), Positives = 253/554 (45%), Gaps = 59/554 (10%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D +  I   +  +  L+K  GG+  + + +RG GA I   +  + GV+P LK+  +
Sbjct: 1   METEDSINSINYIIATSMQLSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILEN 60

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +Q G R+G+  AYL  +H D+ +F+D +K   D++ R   ++    IPD F++  
Sbjct: 61  VFDYADQLGMRRGSGVAYLNIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLA 120

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           T+N  + +F P+ +   + +   +  +  E Y++ A   +  + +++SA  +  ++  + 
Sbjct: 121 TENKNFFIFEPNTIYQKYKVLLSDLNM-NEWYDKLAADKD-ILKKELSARNVLTRIAQIQ 178

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCN 601
           FE+G+P++ + D  N + P + +G +  SNLCTEI     S                 CN
Sbjct: 179 FESGYPYVIYIDNANKQHPLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCN 238

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
           L S+NL+            L   I  ++R L  V D  +       +K+N + R++GLG+
Sbjct: 239 LASLNLVNLLEEK-----DLEKVIDISMRALTAVSDLTSIKNAPSIRKANESFRSVGLGV 293

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719
           + F   L   ++ Y  PE +E AD     I+++++ AS  +A+E    + +F+ S +  G
Sbjct: 294 LNFTGVLLKNNLAYDDPEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANG 353

Query: 720 VFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            +    +    E + E        +   S   W +LK++V+  G+ N+  +AIAPT +I+
Sbjct: 354 SYFDQYLNNSFEPKSEKVKELLKNIKVPSPEDWAKLKEKVQQDGLYNAYRLAIAPTQSIS 413

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            +   + SI P    +  +   +        FL  E +                      
Sbjct: 414 YLQSATASIQPIISPIETRLYGNSMTYFPMPFLTKENEH--------------------- 452

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                     ++ +A++ID   LI+ ++  QK IDQ  S  LY+    + + L  +Y  A
Sbjct: 453 ----------LYKSAYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYA 502

Query: 893 WLMGLKTTYYLRSR 906
              GLK+ YY+R++
Sbjct: 503 HHKGLKSLYYVRTK 516


>gi|256825535|ref|YP_003149495.1| vitamin B12-dependent ribonucleotide reductase [Kytococcus
           sedentarius DSM 20547]
 gi|256688928|gb|ACV06730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kytococcus sedentarius DSM 20547]
          Length = 985

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/629 (21%), Positives = 243/629 (38%), Gaps = 35/629 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    E +      E    L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I  
Sbjct: 110 GYFATEDDALVFEHELTYALLHQIFSFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYREEGFIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFS 503
           + A    L+  H D+ EF+D +    D  R   D      +  D       QNA  ++  
Sbjct: 229 RAAKMVVLDVDHPDIVEFIDTKAREEDKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 288

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWI 561
            DE           F  A EN E    R      V   ++A  L+ +M    +E   P I
Sbjct: 289 SDE-----------FMRAVENGEEFGLRSRSTGDVIETVNAADLFTRMAKAAWECADPGI 337

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDK 620
            + D  N        G +++SN C+E     +S     CNL S+NLL     ++ FD ++
Sbjct: 338 QYDDTINHWHTNPESGRINASNPCSEYMSLDNSS----CNLASLNLLKFLNDDDTFDVER 393

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             +     +  +D  I       +   ++    R +G+G     + L      Y S    
Sbjct: 394 FQAVTELVITAMDISICFADFPTDPIGETTRNFRQLGIGYANLGALLMATGHGYDSEGGR 453

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++A      ++  +   S ELA   G Y+ +  +               AE+     M+ 
Sbjct: 454 QLAAAITSLLTGASYKRSAELAAVVGPYNGYARNAEAHNRVMRQHRDANAELAPLHEMDA 513

Query: 741 ----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS-N 794
                +   WD +       G RN+    +APT TI  +    +  I+P +  +  K   
Sbjct: 514 HIQDAATEAWDAVVALGDEHGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLV 573

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF--- 849
             G   +VN  +   LK       A  + ++Y    G + +   + ++  +I  TA    
Sbjct: 574 GGGSMQIVNQTIPRALKLLGYDQAATDAIVEYIAEHGHVVDAPGLAEEHYEIFDTAMGER 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + L E  + ++++ +Y + W  GLK     R    
Sbjct: 634 AIAPMGHVRMMAAVQPFLSGAISKTVNLPERATVEEIEEVYLEGWKSGLKALAVYRDNCK 693

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
                S+ KG + K +A   T  + ++ +
Sbjct: 694 VGQPLSSGKG-ENKGSADDGTPASEASAA 721


>gi|125745091|ref|YP_001033968.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 2]
 gi|327488428|sp|Q77MS1|RIR1_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|7673150|gb|AAF66774.1|AF147806_38 ribonucleotide reductase large subunit [Gallid herpesvirus 2]
 gi|10180744|gb|AAG14232.1|AF243438_47 UL39 ribonucleotide reductase large subunit-like protein [Gallid
           herpesvirus 2]
 gi|148806368|gb|ABR13124.1| UL39 [Gallid herpesvirus 2]
 gi|194346459|gb|ACF49641.1| UL39 [synthetic construct]
 gi|194750452|gb|ACF94929.1| UL39 [Gallid herpesvirus 2]
 gi|237626302|gb|ACR02825.1| UL39 [synthetic construct]
          Length = 822

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 173/695 (24%), Positives = 293/695 (42%), Gaps = 77/695 (11%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQA 319
           E V     + + ++ D++     +        + LGLQ  + Y+ Y + +   + E    
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPW----LKRLGLQSALKYEEYLVELEDGKKESLCQ 199

Query: 320 FFMRV--------AM------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           FF+R+        +M       L             F+  L++  F+ STP +   G   
Sbjct: 200 FFVRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREG 259

Query: 366 PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYS-GGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +SC+L     ++      A+ E+ +    + GG+G     + G             G
Sbjct: 260 TSTASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGK-----------FG 308

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTA 482
           ++  +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A
Sbjct: 309 LMHVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLA 368

Query: 483 NWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            W  DL  KR        +N  WTLF     S L  L+ +EFE  YE  E +        
Sbjct: 369 LWSCDLLFKRYLRHVNGEKNVIWTLFDSR-ASILTKLHSEEFEKEYERLESEGLG----- 422

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSE 595
              I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + + 
Sbjct: 423 VASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDAN 482

Query: 596 ETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              VC+L SINL         N QFD+D L   +R A   ++ +++ +    EK+     
Sbjct: 483 TNGVCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRE 542

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
            +R++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ 
Sbjct: 543 RNRSMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFAD 602

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA
Sbjct: 603 FSNSYYARGRLHFDGWAN---------VELAAVEEWNMLRDRIVSAGLYNAQFIALMPTA 653

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKY 826
             A +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+ 
Sbjct: 654 ASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALES 713

Query: 827 HDGSIG----NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            + +I     N       LK  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E + 
Sbjct: 714 ANWNIQTALGNKPECHSLLK--YKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETAD 771

Query: 883 KKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
             L       +   A+  GLKT  YY + R AT+ 
Sbjct: 772 GTLLASRVMNLLLHAYKAGLKTGMYYCKIRKATNA 806


>gi|307329251|ref|ZP_07608416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
 gi|306885150|gb|EFN16171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
          Length = 953

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 252/685 (36%), Gaps = 82/685 (11%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYN 344
             + I+  +YF    G   R    +    RV           G      + E    E   
Sbjct: 73  NAVNIVTSKYFRGAVGSPEREASLKQLIDRVVRSYRKAGEDNGYFASPADAEIFDHELTY 132

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G +
Sbjct: 133 ALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLN 192

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F
Sbjct: 193 LSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAF 251

Query: 463 LDLRKNTGDDRRRTHDM-------------------NTANWIPDLFMKRVTQNAGWTLFS 503
           ++ +    +  R   D                    N +  + D FMK V   + + L S
Sbjct: 252 IETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVESGSSFGLRS 311

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                    L G+  E                   ++ A +L+RKM    +    P I +
Sbjct: 312 --------RLTGEPIE-------------------EVDAKSLFRKMAEAAWACADPGIQY 344

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDY 618
            D  N        G + +SN C+E     +S     CNL S+NL+    ++      FD 
Sbjct: 345 DDTINHWHTSPESGRITASNPCSEYMHLDNSS----CNLASLNLMKFLQDDDAGNQRFDA 400

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++ A  +   +  +D  I       EK  ++    R +G+G     + L      Y S  
Sbjct: 401 ERFAKVVELVITAMDISICFADFPTEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDG 460

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDEL 736
              +A      ++  +   S ELA   G Y  +  +                +A+  D+L
Sbjct: 461 GRALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNADAHKRVMKQHSDANAIAKRMDDL 520

Query: 737 A--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS 793
              +   +   W ++ +  +  G RN+    +APT TI  +    +  ++P    +  K 
Sbjct: 521 DAPVWAAATEAWQDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKK 580

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF- 849
            + G    + +  V +  +R  + E  +  +  H    GN+   P    +  ++   A  
Sbjct: 581 LVGGGSMQIVNNTVPKALKRLGYQEEQVEAIVAHIADHGNVIDAPGLKPEHYEVFDCAMG 640

Query: 850 --EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I PM  +   +  Q ++  A S  + + E  + ++++ IY + W +G+K     R  
Sbjct: 641 ERSISPMGHVRMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGIKALAIYRDN 700

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDP 931
                  S  K  + K  A P  + 
Sbjct: 701 CKVGQPLSAKKK-EEKAQAEPEVEK 724


>gi|41387637|gb|AAS01681.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 822

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/695 (24%), Positives = 293/695 (42%), Gaps = 77/695 (11%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQA 319
           E V     + + ++ D++     +        + LGLQ  + Y+ Y + +   + E    
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPW----LKRLGLQSALKYEEYLVELEDGKKESLCQ 199

Query: 320 FFMRV--------AM------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           FF+R+        +M       L             F+  L++  F+ STP +   G   
Sbjct: 200 FFVRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREG 259

Query: 366 PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYS-GGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +SC+L     ++      A+ E+ +    + GG+G     + G             G
Sbjct: 260 TSTASCYLMDPRTNNTQDALKAITEDVVPHLLARGGIGISLQHLNGK-----------FG 308

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTA 482
           ++  +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A
Sbjct: 309 LMHVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLA 368

Query: 483 NWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            W  DL  KR        +N  WTLF     S L  L+ +EFE  YE  E +        
Sbjct: 369 LWSCDLLFKRYLRHVNGEKNVIWTLFDSR-ASILTKLHSEEFEKEYERLESEGLG----- 422

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSE 595
              I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + + 
Sbjct: 423 VASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDAN 482

Query: 596 ETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              VC+L SINL         N QFD+D L   +R A   ++ +++ +    EK+     
Sbjct: 483 TNGVCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRE 542

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
            +R++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ 
Sbjct: 543 RNRSMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFAD 602

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA
Sbjct: 603 FSNSYYARGRLHFDGWAN---------VELAAVEEWNMLRDRIVSAGLYNAQFIALMPTA 653

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKY 826
             A +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+ 
Sbjct: 654 ASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALES 713

Query: 827 HDGSIG----NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            + +I     N       LK  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E + 
Sbjct: 714 ANWNIQTALGNKPECHSLLK--YKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETAD 771

Query: 883 KKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
             L       +   A+  GLKT  YY + R AT+ 
Sbjct: 772 GTLLASRVMNLLLHAYKAGLKTGMYYCKIRKATNA 806


>gi|182435508|ref|YP_001823227.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776145|ref|ZP_08235410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464024|dbj|BAG18544.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656478|gb|EGE41324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
          Length = 965

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 133/631 (21%), Positives = 231/631 (36%), Gaps = 36/631 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+  V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQVFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E F++ +    +  R   D      +  D       QNA  ++   DE   
Sbjct: 240 ILDVDHPDIENFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMK 299

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +  GK    A         R    V  ++ A +L+RKM    +    P I + D  N 
Sbjct: 300 AVETGGKFGLRA---------RMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINA 350

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G ++ SN C+E     ++     CNL S+NL+    ++      F+ ++ A  
Sbjct: 351 WHTCPESGRINGSNPCSEYMHLDNTS----CNLASLNLMKFLKDDGLGNQSFESERFAKV 406

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 407 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 466

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNR 740
                ++  +   S ELA   G Y  +  +            D+      V D +  +  
Sbjct: 467 AITSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHVDDLDSPVWA 526

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +     G RN+    IAPT TI       +  ++P    +  K  + G  
Sbjct: 527 AATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGS 586

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------ID 852
             + +  V +  +R  +    I  +  H    GN+   P  LK  H   F+       I 
Sbjct: 587 MQIVNGTVPQALRRLGYQPEQIEAIVAHIAENGNVVDAPA-LKTEHYEVFDCAMGERSIS 645

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            M  +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R       
Sbjct: 646 AMGHVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQ 705

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             S       K       +    T    +  
Sbjct: 706 PLSAKSKDKEKEEVTAKAEETIRTAVEKVVE 736


>gi|104304004|gb|ABF72279.1| HSV-1 UL39-like protein [Gallid herpesvirus 2]
          Length = 822

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/695 (24%), Positives = 293/695 (42%), Gaps = 77/695 (11%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQA 319
           E V     + + ++ D++     +        + LGLQ  + Y+ Y + +   + E    
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPW----LKRLGLQSALKYEEYLVELEDGKKESLCQ 199

Query: 320 FFMRV--------AM------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           FF+R+        +M       L             F+  L++  F+ STP +   G   
Sbjct: 200 FFVRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREG 259

Query: 366 PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYS-GGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +SC+L     ++      A+ E+ +    + GG+G     + G             G
Sbjct: 260 TSTASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGK-----------FG 308

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTA 482
           ++  +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A
Sbjct: 309 LMHVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLA 368

Query: 483 NWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            W  DL  KR        +N  WTLF     S L  L+ +EFE  YE  E +        
Sbjct: 369 LWSCDLLFKRYLRHVNGEKNVIWTLFDSR-ASILTKLHSEEFEKEYERLESEGLG----- 422

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSE 595
              I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + + 
Sbjct: 423 VASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDAN 482

Query: 596 ETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              VC+L SINL         N QFD+D L   +R A   ++ +++ +    EK+     
Sbjct: 483 TNGVCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRE 542

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
            +R++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ 
Sbjct: 543 RNRSMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFAD 602

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA
Sbjct: 603 FSNSYYARGRLHFDGWAN---------VELAAVEEWNMLRDRIVSAGLYNAQFIALMPTA 653

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKY 826
             A +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+ 
Sbjct: 654 ASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALES 713

Query: 827 HDGSIG----NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            + +I     N       LK  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E + 
Sbjct: 714 ANWNIQTALGNKPDCHSLLK--YKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETAD 771

Query: 883 KKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
             L       +   A+  GLKT  YY + R AT+ 
Sbjct: 772 GTLLASRVMNLLLHAYKAGLKTGMYYCKIRKATNT 806


>gi|297202847|ref|ZP_06920244.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
 gi|197717331|gb|EDY61365.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
          Length = 966

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 142/666 (21%), Positives = 247/666 (37%), Gaps = 51/666 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            L+ L DR  +       E  + F             + E    E    L    F  ++P
Sbjct: 97  SLKQLIDR-IVKTYRKAGEDYKYF---------ASPADAEIFEHELAYALLHQIFSFNSP 146

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 147 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 205

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F++ +    +  R
Sbjct: 206 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIETKVKEEEKIR 265

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   D      +  GK              R  
Sbjct: 266 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVETGGKFG---------LTSRMT 316

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  ++ A AL+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 317 GEVIEEVEAKALFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMHLDN 376

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 377 TS----CNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVITAMDISICFADFPTQKIGE 432

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 433 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGSITSLMTGTSYRRSAELAAVVGPY 492

Query: 709 SSFKGSLWDQGVF-----PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
             +  +   Q          D  G    V D +  +   +   W ++ +  +  G RNS 
Sbjct: 493 DGYARN--AQPHLRVMKQHSDENGKAVRVDDLDTPIWAAATEAWQDVLRLGEKNGFRNSQ 550

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I
Sbjct: 551 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 610

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLN 874
             +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  
Sbjct: 611 EAIVAHIAENGNVIDAP-GLKHEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKT 669

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L E  + + ++ +Y +AW MG+K     R         S  K  + +   V      +
Sbjct: 670 VNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSA-KTKEKEKTEVTEKAEAT 728

Query: 934 STHSLG 939
              ++ 
Sbjct: 729 IRETVE 734


>gi|302542052|ref|ZP_07294394.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459670|gb|EFL22763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces himastatinicus ATCC 53653]
          Length = 954

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 134/650 (20%), Positives = 246/650 (37%), Gaps = 45/650 (6%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRV---------AMGLALKETEKEKRAVEFYN 344
             + I+  +YF    G  +R    +    RV         A G      + E    E   
Sbjct: 72  NAVNIVTSKYFRGAVGSPTREASLKQLIDRVVGTYRKSGEANGYFASPADAEIFDHELTY 131

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I    +E  M+ K   G G +
Sbjct: 132 ALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLN 191

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
            + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F
Sbjct: 192 LSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAF 250

Query: 463 LDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           ++ +    +  R   D      +  D       QNA  ++   D      +  G +F + 
Sbjct: 251 IETKVKEEEKVRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVES-GSQFGLR 309

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R   +   +I A +L+RKM    +    P I + D  N        G + +
Sbjct: 310 S--------RMTGEPIEEIDAKSLFRKMAEAAWACADPGIQYDDTINHWHTSPETGRITA 361

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVI 636
           SN C+E     +S     CNL S+NL+    ++      FD ++ A  +   +  +D  I
Sbjct: 362 SNPCSEYMHLDNSS----CNLASLNLMKFLEDDDAGNQRFDAERFAKVVELVITAMDISI 417

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  +K  ++    R +G+G     + L      Y S     +A      ++  +  
Sbjct: 418 CFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYK 477

Query: 697 ASVELAQERGAYSSFKGSLWDQGVF--PIDSIGLLAEVRDELA--MNRTSRLPWDELKKR 752
            S ELA   G Y  +  +                +A+  D+L   +   +   W ++ + 
Sbjct: 478 RSAELAGVVGPYDGYARNADAHNRVMKQHSDANAIAKRVDDLDSPVWAAATEAWQDVLRL 537

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    +APT TI  +    +  ++P    +  K  + G    + +  V +  
Sbjct: 538 GEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNNTVPKAL 597

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAF---EIDPMWLIESASRRQK 865
           +R  +    +  +  H    GN+   P    +  ++   A     I PM  +   +  Q 
Sbjct: 598 KRLGYQPEQVEAIVAHIAEHGNVIDAPGLKLEHYEVFDCAMGERSISPMGHVRMMAAAQP 657

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++  A S  + + E  + ++++ IY + W +GLK     R         S
Sbjct: 658 FLSGAISKTVNMSESATVEEIEEIYFEGWKLGLKALAIYRDNCKVGQPLS 707


>gi|46519448|gb|AAT00096.1| JM119 [Macaca fuscata rhadinovirus]
          Length = 788

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 171/744 (22%), Positives = 297/744 (39%), Gaps = 84/744 (11%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RI 314
            +  +E  +  L HE+ +D  L        Y       YL     YD Y L  +GS    
Sbjct: 83  EKLSDEVREFMLKHEAALDGLLQDFKQSKAYANLVNCGYLSAVRFYDTYVLRTHGSSPIF 142

Query: 315 EMPQAFFMRVAMGLALK-------------------ETEKEKRAVEFYNLLSSFHFMCST 355
           E     FMRVA+ +A +                   E ++       ++ +SS    C+T
Sbjct: 143 ESVAQMFMRVAVFVACQCIKFPCLRKTLRHLVQSETELDEMYLVGYAFHYISSQIVCCAT 202

Query: 356 PTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           P L ++G R  QLSSCF+   ++  +   +    +E + L     G+G D +        
Sbjct: 203 PVLRSAGLRGGQLSSCFILKPSMATENKTLKALHEEMSPLLASKSGVGIDVSSF------ 256

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
                 + + +   LK+ N      N    R     AY+E WH  + +FL+ +     + 
Sbjct: 257 -----AEHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAKMPENQE- 310

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
            R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI    Y R    
Sbjct: 311 -RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EYNRLVAA 366

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
           G+      +   ++   ++  + +TG P++  K+  N     +  G  ++ SNLC EI  
Sbjct: 367 GKH--SSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNLCAEIVQ 424

Query: 591 NSSSEETAVCNLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRVLDNVID 637
                + +VCNL +I+L                  +  F ++ L   +  AV +++  I 
Sbjct: 425 QP-EGQASVCNLANISLPKCLRPPRGKSGVEPGKGDVTFGFELLDDAVEAAVIIVNACIL 483

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 E  ++     R++G+G+ G       L   Y   E+ ++  E  + + F A+  
Sbjct: 484 GGTAPTESVRRG-QKERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMYFAAVHT 542

Query: 698 SVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           S E  L  E   +  ++ S   QGVF   +        D +  +      W++L + +  
Sbjct: 543 SHEIVLLGEGTPFHGWERSRLAQGVFHWQTW-------DGVKPSHPPLERWEQLGRSIAQ 595

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N      +K  DL
Sbjct: 596 HGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKRVKPGDL 655

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                   ++ + G + +      D  KI  TAF+  P+  +E A  R  ++DQ+QSLN 
Sbjct: 656 ------RTVRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQSQSLNF 709

Query: 876 YLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVE-KSTLKGVDGKLNAVPVTD 930
           +L E   +    +  +    + +GLKT  YY R +  T +     L  V G   +    +
Sbjct: 710 FLKEEQATRASYIRDLLLTGYRLGLKTMLYYCRIQKQTKLNALQCLDQVVGDNTSSEGAE 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
            N    + G  +       C  CQ
Sbjct: 770 SNRVQKADGEQA-----EVCLACQ 788


>gi|290956950|ref|YP_003488132.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
 gi|260646476|emb|CBG69573.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
          Length = 965

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 138/659 (20%), Positives = 243/659 (36%), Gaps = 52/659 (7%)

Query: 297 GLQILYDR----YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           GL+ L DR    Y      +R                    + E    E    L    F 
Sbjct: 95  GLKQLIDRIVKTYTKAGEDNRY--------------FASPADAEIFEHELAYALLHQVFS 140

Query: 353 CSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R   
Sbjct: 141 FNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS- 199

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
             +  + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE+F+  +    
Sbjct: 200 KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEDFIATKVKEE 259

Query: 471 DDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           +  R   D      +  D       QNA  ++   DE     +  G EF +         
Sbjct: 260 EKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVE-NGTEFGLR-------- 310

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            R   +V  K+ A AL+RK+    +    P I +    N        G + +SN C+E  
Sbjct: 311 ARMTGEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCPESGRITASNPCSEYM 370

Query: 590 LNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
              ++     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +
Sbjct: 371 HLDNTS----CNLASLNLMKFLKDDGLGRQSFEVERFAKVVELVITAMDISICFADFPTQ 426

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K  ++    R +G+G     + L      Y S     +A      ++  A   S ELA  
Sbjct: 427 KIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAITSLMTGTAYKRSAELAAV 486

Query: 705 RGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRN 760
            G Y  +  +            D+ G    + D +  +   +   W ++ +  +  G RN
Sbjct: 487 VGPYDGYARNADAHNRVMKQHSDANGTAVRMDDLDSPVWAAATEAWQDVLRLGEKNGFRN 546

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           S    +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E 
Sbjct: 547 SQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEE 606

Query: 820 MISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSL 873
            I  +  H    GN+   P    +  ++   A     I PM  +   +  Q WI  A S 
Sbjct: 607 QIEAIVAHIADHGNVIDAPGLKQEHYEVFDCAMGERAISPMGHVRMMAAIQPWISGAISK 666

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + +    + ++++ IY +AW +G+K     R         S       K       + 
Sbjct: 667 TVNMPETATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQPLSAKTKESEKAEITEKAEE 725


>gi|91791016|ref|YP_551967.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91700896|gb|ABE47069.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 784

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 153/681 (22%), Positives = 258/681 (37%), Gaps = 114/681 (16%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            +L ++Y      S  E+ +    RVA  LA  + ++ +          +  F+      
Sbjct: 20  DVLLEKYAAPGESSVREIQE----RVATSLADDKAQQARFVSAQ-----AGGFVPGGRIN 70

Query: 359 FNSGTRH-PQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRG 409
             +G      + +CF+  V D + G        I  AL+E+A   +  GG+G D++ +R 
Sbjct: 71  SAAGMDRVSTMINCFVQPVGDSMSGSNQDGQPGIMDALRESAETMRRGGGVGYDFSSIRP 130

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK-- 467
           +GA + GT+ K+ G + +++V +     V   G R+GA    +   H D+E F+D +K  
Sbjct: 131 VGARVKGTDSKASGPVSYMRVFDRMCQTVESAGARRGAQMGVMRVDHPDIEMFIDAKKTP 190

Query: 468 ---NTGDDRRRTH------------------------DMNTANWIPDLFMKRVTQNAGWT 500
                G D++                           + N +  + D FM  V  ++ + 
Sbjct: 191 DFSQMGLDKKDADGLLDLVRKNQGFGWSLRSAFATLSNFNISVAVTDEFMNAVVNDSDFD 250

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQAD--RGEIKVFRKISAVALWRKMLTMLFETGH 558
           L    E                E    +         V+R + A+ +W K++   +    
Sbjct: 251 LVHDAEP--------------VEACPTKVCTDGKARFVYRTVKAIEIWTKIMRNTYYGAE 296

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           P + F D  N  +  ++  V+ ++N C E TL         C LGS NL    +N     
Sbjct: 297 PGVLFIDRINQDNNLRYCEVIKATNPCGEQTLPP----YGCCCLGSPNLTRFVSNPFTLM 352

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+D L+  +  AV +LD V+D     + +        R IGLG  G   A+ +L I 
Sbjct: 353 ASFDFDGLSKVVAKAVEMLDKVLDKTHWPLPQQASEAANKRRIGLGHFGLADAMAMLGIR 412

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEV 732
           Y S +  + A    E +   A  ASV LA+  GA+  F    + ++G F           
Sbjct: 413 YDSQQGADFAAHVSEVLRDSAYMASVNLAKTLGAFPFFDAEKYLEEGTF----------- 461

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLY 790
                    SRLP +++K  ++  G+RNS+ ++IAPT TI+   G   S  I+P +    
Sbjct: 462 --------ASRLP-EKIKDAIRMYGIRNSHLLSIAPTGTISMAFGDNASSGIEPIFSLRQ 512

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++ M  D +    F + +   R           K   G         D    +  TA +
Sbjct: 513 QRNKMMADGSR-QIFELEDYAYRQF---------KLSKGE--------DAKSDVFVTAMQ 554

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +     +        +ID A S  + +      +    +Y  AW MGLK     R     
Sbjct: 555 MTVADHLRVLGAVAPYIDSAISKTVNVPADYPFEDFQQVYMDAWRMGLKGITTYRPNDMI 614

Query: 910 SVEKSTLKGVDGKLNAVPVTD 930
                +    D K       D
Sbjct: 615 GAVLVSADDADKKAAVATEQD 635


>gi|329922843|ref|ZP_08278359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
 gi|328941616|gb|EGG37901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
          Length = 718

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 128/558 (22%), Positives = 231/558 (41%), Gaps = 56/558 (10%)

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            +    GG+G + + +R   A + G NG S G + +  + + T   + QGG R+GA+   
Sbjct: 3   EIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVSWGGLFSYTTGLIEQGGSRRGALMLM 62

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +  WH DVE+F+ +++  G    +  + N +  + + FMK V ++  W L  PD     +
Sbjct: 63  MNDWHPDVEDFITVKQTMG----QVTNANLSVCVSNDFMKAVKEDLDWELVFPDTTDPDY 118

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           D   + ++   + +++      I  ++ + A  +W  ++   +++  P + F +  N  S
Sbjct: 119 D---ELWDGDLDKWKKAG--RSIIPYKTVKAREVWHTIIESAWKSAEPGVVFMEYYNQMS 173

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRTAV 629
              +   +  +N C E  L        VCNL ++NL   +     D  +D+LA+T R +V
Sbjct: 174 NSWYFNPIICTNPCGEQGLPGW----GVCNLSAMNLSKFYDEANHDVAWDELATTTRYSV 229

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LDNVID   +  E+ + +    R +GLG MG    +  L+I Y SPE++E  D+   F
Sbjct: 230 RFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLAELMIKLNIRYGSPESLEFLDKLYGF 289

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I+  A  AS ++A+E+G++ +F   L+ Q  F  +   +  EV                 
Sbjct: 290 IAREAYLASADIAEEKGSFQAFDAELFLQSGFMKNMAEVYPEV----------------- 332

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + V+  G RN   +  APT +   + G S  I+P +   Y + +  G          + 
Sbjct: 333 AEAVRKKGARNVTVITQAPTGSTGTMVGTSTGIEPYFAFKYFRQSRLGFDEQFVPIAQDW 392

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L                H G         ++L   + TA  +     I   +  Q+W+D 
Sbjct: 393 L--------------DSHPG---------EELPDYYVTAMSLSAEDHIRVQAAIQRWVDS 429

Query: 870 AQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S         + +    +Y  A+ +G K     R  S       T K  D    A   
Sbjct: 430 SISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIYRDGSRDVQVLQTEKKEDKAAEATTA 489

Query: 929 TDPNSSTHSLGIPSSCTS 946
           +   ++        +   
Sbjct: 490 STAETALEQSAAGQAAEE 507


>gi|255535746|ref|YP_003096117.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341942|gb|ACU08055.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 848

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 148/701 (21%), Positives = 275/701 (39%), Gaps = 111/701 (15%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNLL 346
           F  + L  ++   +Y L   +G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FNGDDLAAKVWVSKYALKDSDGNIYERTPDDMHRRIASEIARIEANYPNALSETEVFDLI 85

Query: 347 SSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    S  T   +  +   LS+CF+       D    I    QE   L K  GG+
Sbjct: 86  KNFKYIIPQGSPMTGIGNDFQIASLSNCFVIGSGTQSDSYGSIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D +
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSVNHPDSD 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F++ +   G    +    N +  I D FM+ V  N  +T   P    D           
Sbjct: 205 DFVNAKLEQG----KITGANISVRIDDEFMQAVVGNENYTQKYPIHSED----------- 249

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         K  ++I A  LW K++   +++  P I F D     S       + 
Sbjct: 250 -------------PKFRKEIKATELWDKIIHNAWKSAEPGILFWDTIIRESLPDCYADLG 296

Query: 581 ----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L ++NL ++  N      +F+++     +  A R+
Sbjct: 297 YETVSTNPCGEIPLCPYDS----CRLLAVNLFSYVENPFTKKAKFNFELFKKHVGYAQRM 352

Query: 632 LDNVIDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+    I+                          +K     R  G+G+      L
Sbjct: 353 MDDIIDLEIEKIDAILDKIDSDPESSEIKATEKNLWNNIRKKTIEGRRTGVGITAEGDML 412

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L+I Y S E  E +    + ++  A  +SVE+A+ERGA++ +     +   F      
Sbjct: 413 AALNIQYGSKEGNEFSTLVHKTLALAAYRSSVEMAKERGAFAIYDAKREENNPFVQRIKD 472

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              ++ ++L                 +  G RN   + IAPT + + +   +  I+P + 
Sbjct: 473 ADPQLFEDL-----------------QKFGRRNIALLTIAPTGSTSLMSQTTSGIEPVFL 515

Query: 788 NLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG------------SIGNI 834
            +Y +   ++ +   V    V+E+     W+E ++   ++               S   I
Sbjct: 516 PVYKRRRKVNPNDQDVRVDFVDEVGDH--WEEYIVFHHRFKQWMEVNGIDTDRKYSQDEI 573

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAW 893
            +I +      AT+ ++D +  +E     QKW+D + S+ + +   + ++L + +Y +AW
Sbjct: 574 NKIIETSPYYKATSNDVDWLSKVEMQGAIQKWVDHSISVTINIPNDATEELVNQLYIKAW 633

Query: 894 LMGLKTTYYLR--SRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            +G K     R  SRS   +     K       A P   P 
Sbjct: 634 EVGCKGVTVYRDGSRSGVLISNEDKKEEVPANTAFPKKRPQ 674


>gi|305665964|ref|YP_003862251.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
 gi|88710739|gb|EAR02971.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
          Length = 847

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 159/700 (22%), Positives = 270/700 (38%), Gaps = 111/700 (15%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  Q+  ++Y L    G+  EM P     R+A  ++  E +        E Y+L+
Sbjct: 26  FKGDDLAAQVWINKYALKDSEGNLYEMNPDDMHYRIAKEISRVEQKYPNPLTEKEVYDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ----LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGG 399
            +F ++    +   +G  +P     LS+CF+       D   GI    QE   L K  GG
Sbjct: 86  KNFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGTDGKSDSYGGIMKIDQEQVQLMKRRGG 144

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D 
Sbjct: 145 VGHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSINHPDA 203

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+F+D +   G    +    N +  I D FMK V  N  +T   P               
Sbjct: 204 EDFIDAKMEQG----KVTGANVSVRIDDDFMKAVDNNTNYTQKFP--------------- 244

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                          +   +I A  LW K++   +++  P I F D     S       +
Sbjct: 245 ---------IHSDNPRFTNEIEANKLWDKIVHNAWKSAEPGILFWDTIINESVPDCYADL 295

Query: 580 H----SSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVR 630
                S+N C EI L         C L +INL ++       +  F++      I  A R
Sbjct: 296 GYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVDQPFTKDASFNFPLFKKHIALAQR 351

Query: 631 VLDNVID------------------------INCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           ++D++ID                        +     E  K+     R  G+G+      
Sbjct: 352 IMDDIIDLELEKVDGILEKIMADPELEETKSVEISLWENIKEKAIKGRRTGIGITAEGDM 411

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L + Y S EA E + E  + I+  A  ASV  A++RGA+  F      +  F    I
Sbjct: 412 LAALGLRYGSEEANEFSIEVHKNIALEAYRASVHAAKDRGAFEIFDAEREKENPF----I 467

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L E               ++L   +   G RN   + IAPT T + +   +  I+P +
Sbjct: 468 LRLKEAD-------------EKLYYEMLEYGRRNIALLTIAPTGTTSLMTQTTSGIEPVF 514

Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG------------SIGN 833
             +Y  +  ++ +   VN   V+E+   D W+E ++   ++               S   
Sbjct: 515 LPVYKRRRKVNPNDKNVNVTFVDEVG--DSWEEYVVFHHRFRQWMEVNGIDTNKSYSQVE 572

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-FIYRQA 892
           +++I        AT+ ++D +  +      QKW+D + S+ + L     + L   +Y +A
Sbjct: 573 LDKIVKKSPYYKATSNDVDWLSKVRLQGGVQKWVDHSISVTINLPNEVQEDLVGKLYLEA 632

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           W  G K     R  S + V  S     +  L   P   P 
Sbjct: 633 WKAGCKGVTVYRDGSRSGVLISNEPEAEETLTHFPTKRPQ 672


>gi|117928683|ref|YP_873234.1| vitamin B12-dependent ribonucleotide reductase [Acidothermus
           cellulolyticus 11B]
 gi|117649146|gb|ABK53248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidothermus cellulolyticus 11B]
          Length = 1098

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 125/606 (20%), Positives = 220/606 (36%), Gaps = 38/606 (6%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            A++   ++  +     +    + G R   + +CF+ +V D +  I    +E  ++ K  
Sbjct: 280 LAIDELGVMPVYDIQTESGEYLSDGIR---VHNCFILSVDDTMESILDWYKEEGLIFKGG 336

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWH 456
            G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H
Sbjct: 337 SGAGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDH 395

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
            D+EEF++ +    +  R   D      +          QNA  ++   DE         
Sbjct: 396 PDIEEFIETKVREEEKIRVLRDAGFDMDLGGRDLYSVQYQNANNSVRVSDE--------- 446

Query: 516 KEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             F  A E  E    R      V   + A  L+RKM    +    P I + D  N     
Sbjct: 447 --FMRAVERGESFGLRARTTGEVIETVDARKLFRKMAEAAWACADPGIQYDDTINDWHTC 504

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVL 632
              G + +SN C+E     +S     CNL S+NL+    +  +FD D     +   +  +
Sbjct: 505 PESGRITASNPCSEYMHLDNSS----CNLASLNLMKFLTDDGRFDIDTFIKVVELVITAM 560

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D  I       EK   +    R +G+G     + L      Y S     +A      ++ 
Sbjct: 561 DISICFADFPTEKIADTTRRFRQLGIGYANLGALLMATGHAYDSDGGRALAAAITSLMTA 620

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL----PWDE 748
            A   S ELA   G Y  +  +                 +R    M+R         W E
Sbjct: 621 TAYKRSAELAAIVGPYDGYARNAEAHKRVMRKHAAASDALRTIGEMDRAIAERACQMWRE 680

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RNS    +APT TI       +  I+P    +  K  + G    + +  V
Sbjct: 681 CLTLGEQHGWRNSQASVLAPTGTIGLAMDCDTTGIEPDLALVKFKKLVGGGSMQIVNRTV 740

Query: 808 NELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESAS 861
               +   + E  +  +  +    GS+     +  +  ++   A     I PM  +   +
Sbjct: 741 PRALRTLGYPEEQVEAIVEYISEHGSVVGAPGLRPEHYEVFDCAMGDRAISPMGHVRMMA 800

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q +I  A S  + + E  + + ++ IY Q W +GLK     R+        S  K  +
Sbjct: 801 AVQPFISGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRNNCKVGQPLSDAK--E 858

Query: 921 GKLNAV 926
            K++A 
Sbjct: 859 KKVSAA 864


>gi|254391044|ref|ZP_05006252.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704739|gb|EDY50551.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 965

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 139/664 (20%), Positives = 250/664 (37%), Gaps = 47/664 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  + F             + E    E    L    F  ++P
Sbjct: 99  GLKQLIDR-IVKTYRKAGEEYKYF---------ASPADAEIFEHELAYALLHQIFSFNSP 148

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 149 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 207

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 208 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEGFIETKVKEEEKIR 267

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  G  F +          R  
Sbjct: 268 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMRAVES-GSAFGLR--------ARMT 318

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            ++  ++ A AL+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 319 GEIIEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPESGRINGSNPCSEYMHLDN 378

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++ A  +   +  +D  I       +K  +
Sbjct: 379 TS----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVITAMDISICFADFPTQKIGE 434

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     IA      ++  +   S ELA   G Y
Sbjct: 435 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLMTGTSYRRSAELAAVVGPY 494

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+      + D +  +   +   W ++ +  +  G RN+   
Sbjct: 495 DGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATETWQDVLRLGEKNGFRNAQAS 554

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 555 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQAEQIEA 614

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 615 IVEHIAEHGNVLDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 673

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           + E  + ++++ IY +AW MG+K     R         S  K  + + + +     ++  
Sbjct: 674 MPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSA-KTKEKEQDGIAEKTEDTIR 732

Query: 936 HSLG 939
            ++ 
Sbjct: 733 AAVE 736


>gi|75538786|sp|O54196|NRDJ_STRCL RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|3402271|emb|CAA12167.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus]
          Length = 961

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 139/664 (20%), Positives = 250/664 (37%), Gaps = 47/664 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  + F             + E    E    L    F  ++P
Sbjct: 95  GLKQLIDR-IVKTYRKAGEEYKYF---------ASPADAEIFEHELAYALLHQIFSFNSP 144

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 145 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 203

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 204 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEGFIETKVKEEEKIR 263

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  G  F +          R  
Sbjct: 264 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMRAVES-GSAFGLR--------ARMT 314

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            ++  ++ A AL+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 315 GEIIEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPESGRINGSNPCSEYMHLDN 374

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++ A  +   +  +D  I       +K  +
Sbjct: 375 TS----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVITAMDISICFADFPTQKIGE 430

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     IA      ++  +   S ELA   G Y
Sbjct: 431 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLMTGTSYRRSAELAAVVGPY 490

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+      + D +  +   +   W ++ +  +  G RN+   
Sbjct: 491 DGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATETWQDVLRLGEKNGFRNAQAS 550

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 551 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQAEQIEA 610

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 611 IVEHIAEHGNVLDAP-GLKTEHYKVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 669

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           + E  + ++++ IY +AW MG+K     R         S  K  + + + +     ++  
Sbjct: 670 MPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSA-KTKEKEQDGIAEKTEDTIR 728

Query: 936 HSLG 939
            ++ 
Sbjct: 729 AAVE 732


>gi|309812682|ref|ZP_07706426.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
 gi|308433377|gb|EFP57265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
          Length = 975

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 133/654 (20%), Positives = 238/654 (36%), Gaps = 50/654 (7%)

Query: 303 DRYFLH--INGSRIEMPQAFFMRVAMGLALK---------ETEKEKRAVEFYNLLSSFHF 351
            +YF       +R    +    RV +  A           + + E    E    L    F
Sbjct: 75  TKYFRGAVGTDARESSLKQLIDRVVLTYAKAGRDNGYFATDEDAEIFEHELTYALLHQVF 134

Query: 352 MCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             ++P  FN GT  PQ +S+CF+ +V D +  I    +E   + K   G G + + +R  
Sbjct: 135 SFNSPVWFNVGTASPQQVSACFILSVEDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSS 194

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
              +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +   
Sbjct: 195 -KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKARE 253

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
            D  R   D   A +  DL  + +     QNA  ++   DE      + G  F +     
Sbjct: 254 EDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVNDEFMQAV-VDGGSFGLR---- 305

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   +V   + A  L+ K+    +E   P + + D  N        G + +SN C
Sbjct: 306 ----ARDTGEVIETVDARELFDKINKAAWECADPGVQYDDTINAWHTNPETGRITASNPC 361

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E     +S     CNL S+NLL     ++ FD    A  +   +  +D  I       E
Sbjct: 362 SEYMSLDNSS----CNLASLNLLKFLKEDDTFDAATFAKVVELVITAMDISICFADFPTE 417

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              K+   +R +G+G     + L      Y S     +A      ++  A   S E+A  
Sbjct: 418 SIGKTTVDYRQLGIGYANLGALLMATGHGYDSDGGRALAASITSLLTGAAYKRSAEMAAV 477

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM-------NRTSRLPWDELKKRVKTIG 757
            G Y+ +  +                E+     M       +  +   W ++    +  G
Sbjct: 478 VGPYAGYAQNSQAHNRVMRKHRAANDELSSHKDMGAMASDIHALATKAWADVVTLGEKNG 537

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            RN+    +APT TI  +    +  I+P +  +  K  + G    + +  +    ++  +
Sbjct: 538 FRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTIPRALKKLGY 597

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHA------TAFEIDPMWLIESASRRQKWIDQA 870
            +  I  +  H    G++   P    + +        A  I PM  +   +  Q ++  A
Sbjct: 598 QDEQIEAIVEHIAEKGHVIDAPGLKPEHYEIFDCAMGARAISPMGHVRMMAACQPFLSGA 657

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            S  + L E  S   +  ++ + W +GLK     R         S  K      
Sbjct: 658 ISKTVNLPETASVDDIAEVHLEGWKLGLKAIAVYRDNCKVGQPLSDGKAEKKSE 711


>gi|295134666|ref|YP_003585342.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
 gi|294982681|gb|ADF53146.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
          Length = 850

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 155/679 (22%), Positives = 264/679 (38%), Gaps = 111/679 (16%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F  + L  ++  ++Y L   +G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSDGNIYEQTPNDMHRRIAKEIARVEQRYPNPMTEDEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ----LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGG 399
             F ++    +   +G  +P     LS+CF+       D   G+    QE   L K  GG
Sbjct: 86  KDFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGNEGSSDSYGGVMKIDQEQVQLMKRRGG 144

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D 
Sbjct: 145 VGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSVSINHPDS 203

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+F+D +   G    +    N +  I D FMK V     +T   P               
Sbjct: 204 EDFIDAKMEQG----KVTGANVSVRIDDDFMKAVKNKTAYTQKYP--------------- 244

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                          K  ++I A  LW+K++   +++  P I F D     S       +
Sbjct: 245 ---------VFSDAPKFSKEIEAEKLWKKIVHNAWKSAEPGILFWDTVINESVPDCYADL 295

Query: 580 H----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVR 630
                S+N C EI L         C L +INL ++  +      +F+Y      I  A R
Sbjct: 296 GYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEDPFTTKAKFNYTLFKKHISAAQR 351

Query: 631 VLDNVIDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSA 666
           ++D++ID+    I+                          KK     R  G+G+      
Sbjct: 352 IMDDIIDLELEKIDAILQKIDADPENEDVKGVERNLWLNIKKKAEEGRRTGIGITAEGDM 411

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L I Y S E V  + E  + I+  A  ASVE A+ERGA+  F      +  F    I
Sbjct: 412 LAGLGIKYGSEEGVAFSTEIHKNIALAAYRASVETAKERGAFGIFDSDREKENPF----I 467

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             L E               ++L   +   G RN   + IAPT T + +   +  I+P +
Sbjct: 468 LRLKEAD-------------EKLYYDMLEYGRRNIALLTIAPTGTTSLMTQTTSGIEPVF 514

Query: 787 QNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL---- 841
             +Y  +  ++ +   V    V+E+   D W+E ++   ++ +    N   I  +     
Sbjct: 515 LPVYKRRRKVNPNDKDVRVDFVDEVG--DSWEEYVVFHHRFKEWMKINGHDIDKNYSNTD 572

Query: 842 --------KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-FIYRQA 892
                       AT+ ++D +  +      QKW+D + S+ + L     + L   +Y +A
Sbjct: 573 LDELVKASPYYQATSNDVDWLSKVRMQGAVQKWVDHSISVTINLPNDVSEDLVGRLYLEA 632

Query: 893 WLMGLKTTYYLRSRSATSV 911
           W  G K     R  S + V
Sbjct: 633 WQAGCKGVTVYRDGSRSGV 651


>gi|294815514|ref|ZP_06774157.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443865|ref|ZP_08218599.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328113|gb|EFG09756.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 961

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 139/664 (20%), Positives = 250/664 (37%), Gaps = 47/664 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E  + F             + E    E    L    F  ++P
Sbjct: 95  GLKQLIDR-IVKTYRKAGEEYKYF---------ASPADAEIFEHELAYALLHQIFSFNSP 144

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 145 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 203

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 204 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEGFIETKVKEEEKIR 263

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  G  F +          R  
Sbjct: 264 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMRAVES-GSAFGLR--------ARMT 314

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            ++  ++ A AL+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 315 GEIIEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTCPESGRINGSNPCSEYMHLDN 374

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++ A  +   +  +D  I       +K  +
Sbjct: 375 TS----CNLASLNLMKFLTDDGEGNQSFDVERFAKVVELVITAMDISICFADFPTQKIGE 430

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     IA      ++  +   S ELA   G Y
Sbjct: 431 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISSLMTGTSYRRSAELAAVVGPY 490

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+      + D +  +   +   W ++ +  +  G RN+   
Sbjct: 491 DGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATETWQDVLRLGEKNGFRNAQAS 550

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 551 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQAEQIEA 610

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 611 IVEHIAEHGNVLDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 669

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           + E  + ++++ IY +AW MG+K     R         S  K  + + + +     ++  
Sbjct: 670 MPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSA-KTKEKEQDGIAEKTEDTIR 728

Query: 936 HSLG 939
            ++ 
Sbjct: 729 AAVE 732


>gi|260062376|ref|YP_003195456.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
 gi|88783939|gb|EAR15110.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
          Length = 850

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 156/716 (21%), Positives = 274/716 (38%), Gaps = 117/716 (16%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKE 336
                 L Y   F  + L  ++   +Y L   +G+  E  P     R+A  +A  E +  
Sbjct: 17  EAFEASLAY---FKGDDLAARVWVTKYALKDSDGNIYERTPDDMHRRIAGEIARIEEKYP 73

Query: 337 KR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ----LSSCFLTTVPDDLYGIFGALQ-- 388
                 E ++L+ +F ++    +   +G  +P     LS+CF+     +       ++  
Sbjct: 74  NPLGEEEIFDLIKNFKYIVPQGSPM-AGIGNPYQIASLSNCFVIGTDGNSDSYGAIMKVD 132

Query: 389 -ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA
Sbjct: 133 QEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGA 191

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           +   +   H D E+F+D +   G    +    N +  I D FMK V  +  +T   P   
Sbjct: 192 LMLSVSINHPDAEDFIDAKMEQG----KVTGANVSVRIDDAFMKAVEMDGHYTQKFPIHS 247

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           SD                         K  +KI A  LW+K++   +++  P I F D  
Sbjct: 248 SD------------------------PKFSKKIKASQLWKKIVHNAWKSAEPGILFWDTI 283

Query: 568 NIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDY 618
              S       +     S+N C EI L         C L +INL ++          F++
Sbjct: 284 IDESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINLFSYVEEPFTEEASFNF 339

Query: 619 DKLASTIRTAVRVLDNVIDINCH------------------------TIEKAKKSNHTHR 654
                 I  A R++D++ID+                             +  +K     R
Sbjct: 340 PLFKKHIAAAQRIMDDIIDLELEKVDAILKKIEDDPELDETKMVEYKLWQNIRKKAEEGR 399

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             G+G+      L  L + Y S +A E + E  + I+  A  ASV+ A++RGA+  F   
Sbjct: 400 RTGIGITAEGDMLAALGLRYGSKKANEFSVEVHKTIALEAYRASVQTARDRGAFGIFDAQ 459

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +  F    I  L E               ++L   +   G RN   + IAPT T + 
Sbjct: 460 REKENPF----ILRLKEAD-------------EKLYYEMLEHGRRNIALLTIAPTGTTSL 502

Query: 775 ICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG---- 829
           +   +  I+P +  +Y  +  ++ +        V+E+   D W+E ++   ++       
Sbjct: 503 MTQTTSGIEPVFLPVYKRRRKVNPNDKEARVDFVDEVG--DSWEEYLVFHHQFKAWMITK 560

Query: 830 --------SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
                   S   I  I +      AT+ ++D +  +      QKW+D + S+ + L    
Sbjct: 561 GYDTDKNYSQEEINAIVEKSPYYKATSNDVDWLSKVRLQGEVQKWVDHSISVTINLPNDV 620

Query: 882 GKKLD-FIYRQAWLMGLKTTYYLRSRSATSVEKS---TLKGVDGKLNAVPVTDPNS 933
            ++L   +Y +AW  G K     R  S + V  S     +     L A P   P +
Sbjct: 621 SEELVGKLYLEAWKAGCKGVTVYRDGSRSGVLISNDDNKEDSQNTLTAFPTKRPQT 676


>gi|237626477|gb|ACR02999.1| UL39 [synthetic construct]
          Length = 822

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 173/695 (24%), Positives = 292/695 (42%), Gaps = 77/695 (11%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQA 319
           E V     + + ++ D++     +        + LGLQ  + Y+ Y + +   + E    
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPW----LKRLGLQSALKYEEYLVELEDGKKESLCQ 199

Query: 320 FFMRV--------AM------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           FF+R+        +M       L             F+  L++  F+ STP +   G   
Sbjct: 200 FFVRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREG 259

Query: 366 PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYS-GGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +SC+L     ++      A+ E+ +    + GG+G     + G             G
Sbjct: 260 TSTASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGK-----------FG 308

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTA 482
           ++  +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A
Sbjct: 309 LMHVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLA 368

Query: 483 NWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            W  DL  KR        +N  WTLF     S L  L+ +EFE  YE  E +        
Sbjct: 369 LWSCDLLFKRYLRHVNGEKNVIWTLFDSR-ASILTKLHSEEFEKEYERLESEGLG----- 422

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSE 595
              I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + + 
Sbjct: 423 VASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDAN 482

Query: 596 ETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              VC+L SINL         N QFD+D L   +R A   ++ +++ +    EK+     
Sbjct: 483 TNGVCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRE 542

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
            +R++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ 
Sbjct: 543 RNRSMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFAD 602

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA
Sbjct: 603 FSNSYYARGRLHFDGWAN---------VELAAVEEWNMLRDRIVSAGLYNAQFIALMPTA 653

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKY 826
             A +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+ 
Sbjct: 654 ASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALES 713

Query: 827 HDGSIG----NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            + +I     N       LK  + TAF+ D   LI+  S R  + DQ+QS+ L++ E + 
Sbjct: 714 ANWNIQTALGNKPECHSLLK--YKTAFDYDQALLIDLCSDRAPFADQSQSMTLFITETAD 771

Query: 883 KKL-----DFIYRQAWLMGLKT-TYYLRSRSATSV 911
             L       +   A+  GLKT  YY + R AT+ 
Sbjct: 772 GTLLASRVMNLLLHAYKAGLKTGMYYCKIRKATNA 806


>gi|328951135|ref|YP_004368470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451459|gb|AEB12360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
          Length = 955

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 147/622 (23%), Positives = 239/622 (38%), Gaps = 92/622 (14%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVAN 432
             VPDD+ GI  +  +    AK       D++ +R  GA I G+ G S G + FL ++ +
Sbjct: 205 LEVPDDMGGIIRSAAQAVAQAKEGYEPHVDFSQLRPEGAPIKGSGGTSSGPVSFLLEIFD 264

Query: 433 D------------------------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           +                            V QGG R+GA  A L   H D+ +FL  +  
Sbjct: 265 NFLEWANLGAEAAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDL 324

Query: 469 TGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE---- 523
             +         N +  + D F K +  +A W +  P EV   +  Y    E  Y     
Sbjct: 325 DREAAEGDISTFNISILVTDTFWKALEADALWPVT-PVEVPGKY--YPYPLEEPYTGTLP 381

Query: 524 ---NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
              + E    R       K+ A  LW ++    + TG P + F D  N  S  + +G   
Sbjct: 382 ELPDREADGARAIPLYDGKVPAKWLWHEIAWHAWATGEPGLIFIDRVNDLSALKGLGERY 441

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + S+N C EI L         C+LG++NL A+     FD++     +R AVR LDNV+D
Sbjct: 442 RIRSTNPCGEIPLTVGEP----CDLGAMNLAAYVREGAFDFEAFRRDVRIAVRFLDNVLD 497

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  + ++   R +GLG+MG   AL  + +PY S  A E   E M  +   AI A
Sbjct: 498 VNKFALEDNRAASQKLRRLGLGVMGLADALIKMGLPYDSEAAREQVYEIMSVLREEAIRA 557

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA+ERG +  +                      ++L +                   
Sbjct: 558 SEALAEERGVFPLYAEE---------------QAYFEKLGIRP----------------- 585

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN--------- 808
            RN   + +APT T + + GVS  I+P Y     +   S    +++              
Sbjct: 586 RRNVALLTVAPTGTTSMLMGVSSGIEPVYSPFVWRRIGSEYKPLLHPLFQELMAQFPPHP 645

Query: 809 ELKQRDLWDEA-MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           E  +   WD   +I  ++ + GS+  +E IP+ ++++   A ++ P+  +      Q+  
Sbjct: 646 EYAKDGGWDWDKLIEAIQENHGSVEGLEMIPEAIRRVFRCAHDVAPLDHVRMQGVVQRAF 705

Query: 868 D------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           D       + S  +   +E S   ++  Y +A+  G K     R  S      S  K   
Sbjct: 706 DAEGYAGNSLSKTINLPNEASVADVEAAYTEAYRTGCKGITVYRDGSREFQVLSVKKEEK 765

Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942
                 P +  +        P 
Sbjct: 766 EAKTPQPASASSEPAAPTSRPG 787



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 37/177 (20%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFH 350
           F+     I   +Y    +G         F RVA  +AL  KE E+E+ A  FY L+++  
Sbjct: 6   FDEHAQAIARRQYMQEGDGDVF----GMFRRVANWVALPEKEAERERWAQRFYELMATKR 61

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTT----VPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           F      L  +GT H  + +CF+       P    GI    ++ A++ K  GG G +  P
Sbjct: 62  FCPGGRVLAGAGTAHGNVLNCFVQGATQHPPASFEGIMEVAEKLALVTKVGGGNGVNLDP 121

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
               GA                               R  A   YL   H DVE+F+
Sbjct: 122 YVSRGATKRTG------------------------TVRGWA---YLRADHPDVEDFI 151


>gi|153808746|ref|ZP_01961414.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
 gi|149128572|gb|EDM19790.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
          Length = 796

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 152/666 (22%), Positives = 263/666 (39%), Gaps = 107/666 (16%)

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLT 374
              R+A  +A  E++      A E Y+LL  F ++    S  T   +  +   LS+CF+ 
Sbjct: 1   MHWRIANEVARIESKYPNGLTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            V    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GVDGAADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+
Sbjct: 121 SNSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQ 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +   +    P + ++                            ++I A  LW+K++ 
Sbjct: 176 AAVEGKPYVQQYPIDAAN------------------------PAFTKEIDASTLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINL 607
             +++  P + F D     S       +     S+N C EI L         C L +INL
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINL 267

Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCH--------------------- 641
            ++  N       FD+D     +  A R++D++ID+                        
Sbjct: 268 YSYVVNPFKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMKKIDEDPENEEVKRA 327

Query: 642 ---TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +S
Sbjct: 328 ERVLWEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSS 387

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           VE+A+ERGA+  +         F    I  LAE                EL   +K  G 
Sbjct: 388 VEMAKERGAFEIYNNEREQNNPF----IKRLAEADP-------------ELYAEMKKYGR 430

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE-------- 809
           RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E        
Sbjct: 431 RNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEY 490

Query: 810 ---LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                +   W EA   D      +   I+ +        AT+ ++D +  ++   R QKW
Sbjct: 491 IVFHHKFVTWMEANGYD-PARRYTQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKW 549

Query: 867 IDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +D + S+ + L     + L + +Y +AW  G K     R  S + V  ST    + K   
Sbjct: 550 VDHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST--KSEKKEEL 607

Query: 926 VPVTDP 931
            P   P
Sbjct: 608 PPCKPP 613


>gi|126802153|ref|YP_068342.2| ribonucleotide reductase subunit 1 [Suid herpesvirus 1]
          Length = 790

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 165/653 (25%), Positives = 284/653 (43%), Gaps = 55/653 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYN 344
                 + Y   +   R E    FF+R            +A+ L   +   E     ++ 
Sbjct: 148 SALKYEEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDA-YFR 206

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGAL-QENAMLAKYSGGLGN 402
            L++   + +TP +  +G     L+SC+L   +P        A+  E A +    GG+G 
Sbjct: 207 ALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGL 266

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
                    +        ++G++  LK  +    A+N   +R   VC Y+E WH DV   
Sbjct: 267 SLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAV 321

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLHDLYG 515
           L++R     D+  R  ++ +  W PDLF +R  ++        WTLF  D  S L  L+G
Sbjct: 322 LNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHG 380

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +F   YE  ER     E      +    +   ++     TG P++  KD CN       
Sbjct: 381 PDFAREYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDT 435

Query: 576 VGVVHSS-NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G   ++ NLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ 
Sbjct: 436 RGAALATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNA 495

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           ++ I  +    + +     R++G+GL G  + +  L +  A P A  +     E + +  
Sbjct: 496 MMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGV 555

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           + ASVEL +     +  F+ S + +GV P D+        + +++    R  WD L+ R+
Sbjct: 556 MDASVELCERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRI 606

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ- 812
              G+ N+  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++ 
Sbjct: 607 AEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRL 666

Query: 813 --RDLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRRQKWID 868
             R+      ++ L+    S+      +P         TAFE D   LI+  + R  ++D
Sbjct: 667 FPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVD 726

Query: 869 QAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915
            +QS++L+L EP+  KL       +  +A+ +GLKT  YY + R AT+    T
Sbjct: 727 HSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 779


>gi|1710393|sp|P50643|RIR1_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|437736|emb|CAA50976.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525264|emb|CAA56775.1| ribonucleotid reductase, large subunit [Suid herpesvirus 1]
 gi|40253967|tpg|DAA02162.1| TPA_exp: large subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090509|prf||2019240A ribonucleotide reductase:SUBUNIT=large
          Length = 835

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 165/653 (25%), Positives = 284/653 (43%), Gaps = 55/653 (8%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYN 344
                 + Y   +   R E    FF+R            +A+ L   +   E     ++ 
Sbjct: 193 SALKYEEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDA-YFR 251

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGAL-QENAMLAKYSGGLGN 402
            L++   + +TP +  +G     L+SC+L   +P        A+  E A +    GG+G 
Sbjct: 252 ALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGL 311

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
                    +        ++G++  LK  +    A+N   +R   VC Y+E WH DV   
Sbjct: 312 SLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAV 366

Query: 463 LDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLHDLYG 515
           L++R     D+  R  ++ +  W PDLF +R  ++        WTLF  D  S L  L+G
Sbjct: 367 LNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHG 425

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +F   YE  ER     E      +    +   ++     TG P++  KD CN       
Sbjct: 426 PDFAREYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDT 480

Query: 576 VGVVHSS-NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            G   ++ NLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ 
Sbjct: 481 RGAALATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNA 540

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           ++ I  +    + +     R++G+GL G  + +  L +  A P A  +     E + +  
Sbjct: 541 MMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGV 600

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           + ASVEL +     +  F+ S + +GV P D+        + +++    R  WD L+ R+
Sbjct: 601 MDASVELCERGLRPFDGFEHSRYARGVMPFDAY-------ERVSLREPMR--WDALRVRI 651

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ- 812
              G+ N+  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++ 
Sbjct: 652 AEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRL 711

Query: 813 --RDLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRRQKWID 868
             R+      ++ L+    S+      +P         TAFE D   LI+  + R  ++D
Sbjct: 712 FPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVD 771

Query: 869 QAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915
            +QS++L+L EP+  KL       +  +A+ +GLKT  YY + R AT+    T
Sbjct: 772 HSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 824


>gi|291454575|ref|ZP_06593965.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
 gi|291357524|gb|EFE84426.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 965

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 134/639 (20%), Positives = 238/639 (37%), Gaps = 46/639 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 103 GLKQLIDR-IVKTYRKAGEE---------NNYFASPADAEIFEHELAYALLHQIFSFNSP 152

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 153 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 211

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  + +  +  R
Sbjct: 212 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEEKIR 271

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++        ++D + K  E       R    GE
Sbjct: 272 ALRDAGFDMDLGGDDITSVQYQNANNSVR-------VNDAFMKAVESGSTFGLRARMTGE 324

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 325 --VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 382

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ +  +   +  +D  I       +K  +
Sbjct: 383 TS----CNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKIGE 438

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 439 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVGPY 498

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +               A+       +  +   +   W ++ +     G RN+   
Sbjct: 499 DGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQAS 558

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 559 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMNYSEEQIEA 618

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 619 IVAHIAEHGNVIDAPA-LKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 677

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           L E  + + ++ +Y +AW +G+K     R         S
Sbjct: 678 LPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLS 716


>gi|115379423|ref|ZP_01466524.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822416|ref|YP_003954774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363562|gb|EAU62696.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395488|gb|ADO72947.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
          Length = 926

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 132/642 (20%), Positives = 245/642 (38%), Gaps = 35/642 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G   +E ++E    E  +LL       ++P  FN G    PQ S+CF+ +V D +  I  
Sbjct: 118 GYFAREQDRETFQAELTHLLLRQKAAFNSPVWFNVGVEEQPQCSACFINSVEDSMESILT 177

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
             +  AML KY  G G++ +P+R    H+    G + G + F+K  +  A  V  GGK R
Sbjct: 178 LAKTEAMLFKYGSGTGSNLSPLRSSREHL-TGGGTASGPVSFMKGFDAFAGVVKSGGKTR 236

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKRVTQNAGWTLFS 503
           + A    L   H D+ +F+  + N         +    A++  D +     QN+  ++  
Sbjct: 237 RAAKMVILNASHPDILDFIRCKTNEEKKAWALIEAGYDASFNGDAYGSVFFQNSNNSVRV 296

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            DE        G     A  + +               A  L+R++       G P + F
Sbjct: 297 TDEFMRAVVNDGTWTTRAVRDGQAMETHM---------ARELFREISEAAHLCGDPGLQF 347

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLA 622
               N      +   +++SN C+E        + + CNL S+NL+     +  FD     
Sbjct: 348 DTTVNAWHTCANTARINASNPCSEYMFL----DDSACNLASLNLMHFRTIDGCFDPVAFK 403

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +   +  ++ ++  + +  EK  +++H +R +GLG     + L    +PY SPE    
Sbjct: 404 HAVDVVLLAMEIIVGFSRYPTEKITRNSHDYRPLGLGYANLGALLMACGLPYDSPEGRNY 463

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE---LAMN 739
           A      +   A +AS  LA+  G ++ +  +                ++  E     ++
Sbjct: 464 AGAITSLMCGQAYAASARLAERMGPFAGYAQNAEPMLGVIRKHRKAGHQLAPEGVNPDLH 523

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD 798
              +  WDE        G RNS    +APT TI  +    +  I+P    +  K  + G 
Sbjct: 524 AAQKAAWDEALALGTEHGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDIALIKYKKLVGGG 583

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE----- 850
              + +  V +  +R  + ++   ++  +   + +I     +  +   +   AF+     
Sbjct: 584 MLKIVNQTVPQALERLGYRQSQAQEIISYLDKNETIEGAPHLKPEHLPVFDCAFKPARGK 643

Query: 851 --IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I  M  I+     Q ++  A S  + +    + + ++  Y +AW  GLK     R   
Sbjct: 644 RSIQWMGHIQMMEACQPFLSGAISKTVNMPSNATVEDIEKAYLEAWKRGLKAIAVYRDGC 703

Query: 908 ATSVEKSTLKG--VDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
             +   +T K    D K  A    +P +      +      +
Sbjct: 704 KRTQPLNTSKEQVKDTKAPAAVALEPQAKPEPKAMRKRLPDE 745


>gi|29347555|ref|NP_811058.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339455|gb|AAO77252.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 796

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 150/665 (22%), Positives = 264/665 (39%), Gaps = 105/665 (15%)

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLT 374
              R+A  +A  E +      A E Y+LL  F ++    S  T   +  +   LS+CF+ 
Sbjct: 1   MHWRIANEVARIEAKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            V    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GVDGAADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+
Sbjct: 121 SNSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQ 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
                  +    P E                               ++I A  LW+K++ 
Sbjct: 176 AAVDEKPYIQQYPIE------------------------SANPTTTKEIDASTLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSEETAVCNLGSINL 607
             +++  P + F D     S       +     S+N C EI L         C L +INL
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDS----CRLLAINL 267

Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------------KSN 650
            ++  N       FD++     +  A R++D++ID+    IE+              K  
Sbjct: 268 YSYVVNPFKPDAYFDFELFKKHVALAQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHA 327

Query: 651 HTH------------RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +            R  G+G+      L  L + Y + EA E +++  + ++  A  +S
Sbjct: 328 ERNLWNKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSS 387

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           VE+A+ERGA+  +         F    I  LAE                EL   +K  G 
Sbjct: 388 VEMAKERGAFEIYSNEREQNNPF----IQRLAEADP-------------ELYAEMKKYGR 430

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQR 813
           RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E     ++ 
Sbjct: 431 RNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEY 490

Query: 814 DLWDEAMISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            ++    ++ ++ +        S   I+ +        AT+ ++D +  ++   R QKW+
Sbjct: 491 IVFHHKFVTWMEANGYDPAKRYSQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWV 550

Query: 868 DQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           D + S+ + L     + L + +Y +AW  G K     R  S + V  ST    D K    
Sbjct: 551 DHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLIST--KSDKKETLP 608

Query: 927 PVTDP 931
           P   P
Sbjct: 609 PCKPP 613


>gi|212550980|ref|YP_002309297.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549218|dbj|BAG83886.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 867

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 154/705 (21%), Positives = 276/705 (39%), Gaps = 114/705 (16%)

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALK 331
           M F+ VY  + L Y   F  + L  ++  D+Y L  N G   E  P     R+A  +   
Sbjct: 1   MTFEEVY-KSSLDY---FCGDELAAKVFVDKYALKSNKGEYFESTPNEMHQRIAREIVRI 56

Query: 332 ETEKEK---RAVEFYNLLSSFHFMCSTPTLFN---SGTRHPQLSSCFLTTV-PDDLYGIF 384
           E +             ++S F+++           +  +   LS+CF+     D   GI 
Sbjct: 57  EQKYPNPILTEKNILEVISDFNYLIPQGGNMFGIGNSYQLTSLSNCFVIGNRTDSYGGIM 116

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
              +E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R
Sbjct: 117 RTDEEQIQLMKRRGGVGHDLSHIRPRGSPVNNSAITSTGMVPFMERYSNSTREVAQEG-R 175

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA+   +   H ++E F+D +   G    +    N +  + D FM+ V  N  +    P
Sbjct: 176 RGALMLSMSVEHPEIESFIDAKIEEG----KVTGANISVKLTDEFMRAVESNRSFIQRFP 231

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +  +                         ++ ++I A  LW K++   +++  P + F 
Sbjct: 232 IDSEN------------------------PQIIKEIDAKDLWNKIIHNAWQSAEPGVLFW 267

Query: 565 DPCNIRSPQQHV-----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NN 614
           D     S          G V S+N C EI L         C L +INL ++         
Sbjct: 268 DTILRESIPDCYIDSGFGTV-STNPCGEIPLCPYDS----CRLLAINLYSYVKQPFKKEA 322

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCH------------------------TIEKAKKSN 650
           +FD+D     +  A R++DN++D+                             EK +   
Sbjct: 323 EFDFDLFEEHVALAQRMMDNIVDLEVEKIDAILMKIISDYESDEIKHTEQLLWEKIRHKT 382

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IG+G+      L  L   Y + EA   A+   + ++     ASVE+A+ERGA+  
Sbjct: 383 LIGRRIGIGITAEGDMLAALGFRYGTEEATNFAERIQKVLALSVYRASVEVAKERGAFEI 442

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F   L     F    I  L EV               +L + ++  G RN  C+ IAPT 
Sbjct: 443 FNIELEKNNPF----IHRLKEVD-------------SQLIEDMQQFGRRNIACLTIAPTG 485

Query: 771 TIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           T + +   +  I+P +  +Y  +  ++    +     V+E+   D W E  +   K+   
Sbjct: 486 TTSLMSQTTSGIEPVFLPVYKRRRKVNPSDEITKIDFVDEMG--DSWVEYTVFHHKFVKW 543

Query: 830 S-IGNIER-----------IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             +                +        +T+ ++D +  ++   R Q+W+D + S+ + L
Sbjct: 544 MEVQGYPTTRKYAQREIDALVAKSPYYKSTSNDVDWLQKVKMQGRIQRWVDHSISVTINL 603

Query: 878 DEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
              + ++L +++Y +AW  G K     R  S   V  +T K    
Sbjct: 604 PNETKEELVNYLYIEAWKSGCKGCTVYRDGSRNGVLVTTSKENHK 648


>gi|239944781|ref|ZP_04696718.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291448244|ref|ZP_06587634.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351191|gb|EFE78095.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
          Length = 965

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 136/640 (21%), Positives = 236/640 (36%), Gaps = 46/640 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 95  GLKQLIDR-IVKTYRKAGED---------NNYFASPADAEIFEHELAYALLHQIFSFNSP 144

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 145 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 203

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 204 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIR 263

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK    A         R  
Sbjct: 264 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRA---------RMT 314

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 315 GDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 374

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 375 TS----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGE 430

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 431 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPY 490

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+      + D +  +   +   W ++ +     G RN+   
Sbjct: 491 DGYARNAEPHQRVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQAS 550

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V ++ +R  +    I  
Sbjct: 551 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQVLRRLGYQPEQIEA 610

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 611 IVAHIAENGNVVDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 669

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L E  + + ++ +Y +AW MG+K     R         S 
Sbjct: 670 LPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSA 709


>gi|313837155|gb|EFS74869.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA2]
 gi|314927822|gb|EFS91653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL044PA1]
 gi|314971928|gb|EFT16026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA3]
          Length = 949

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMTAVEQGQPFGLTSRTEPGKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     ++ FD  +    +   +  +D  I       E   ++    R +G+G     
Sbjct: 378 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y+ +  +        I 
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      +  +   ++  WD++ K  +T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S +K  +    A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 728


>gi|328907286|gb|EGG27052.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium sp. P08]
          Length = 974

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 134 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 193

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 194 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 253 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 312

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 313 SDAFMTAVEQGQPFGLTSRTEPGKVLD--------------------------TVDAKEL 346

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 347 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 402

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     ++ FD  +    +   +  +D  I       E   ++    R +G+G     
Sbjct: 403 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 462

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y+ +  +        I 
Sbjct: 463 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 522

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      +  +   ++  WD++ K  +T G RN+    +APT TI  +    +
Sbjct: 523 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 582

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 583 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 642

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 643 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 702

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S +K  +    A P            +P S
Sbjct: 703 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 753


>gi|256391015|ref|YP_003112579.1| vitamin B12-dependent ribonucleotide reductase [Catenulispora
           acidiphila DSM 44928]
 gi|256357241|gb|ACU70738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Catenulispora acidiphila DSM 44928]
          Length = 994

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/614 (22%), Positives = 235/614 (38%), Gaps = 42/614 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I  
Sbjct: 139 GYFATPQDAEIFEHELAHALLHQMFAFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 198

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 199 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATR 257

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+  +    D  R   D   A +  DL  K +T    QNA  +
Sbjct: 258 RAAKMVVLDVDHPDIEEFVQTKAREEDKIRALRD---AGFDMDLGGKDITSVQYQNANNS 314

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGH 558
           +   DE           F  A +N ER   R      V   + A  L+R +    +E   
Sbjct: 315 VRVTDE-----------FMHAVQNTERFGLRARQTGEVIETLDAKQLFRDIAKAAWECAD 363

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFD 617
           P + + D  N        G + +SN C+E     +S     CNL S+NL+     ++ FD
Sbjct: 364 PGLQYDDTINAWHTNPETGRITASNPCSEYLSLDNSS----CNLASLNLMKFLREDDTFD 419

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +     +   +  +D  I        +  ++    R +G+G     + L      Y S 
Sbjct: 420 TETFVKMVELVITAMDISISFADFPTPEIGQTTRDFRQLGIGYANLGALLMATGHAYDSE 479

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--- 734
               IA      ++  A   S ELA   G Y+ F  +                       
Sbjct: 480 GGRAIAAAITSLMTGVAYRRSAELAGVVGPYNGFARNAKPHAAVMRKHADAADAYVPFED 539

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVK 792
            +  +   SR  W    +     G RN+    +APT TI  +  V +  ++P    +  K
Sbjct: 540 FDKQILELSRTEWQRGNEIGAANGWRNAQASLLAPTGTIGFMMDVDTTGVEPDLALVKFK 599

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-- 850
             + G    + +  V    +R  + +  I  +  + G  G++   P  LK  H + F+  
Sbjct: 600 KLVGGGSMQIVNNTVPRALKRLGYQQEQIEAIVEYIGEQGHVVDAP-GLKPEHYSVFDCA 658

Query: 851 -----IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                I PM  +   +  Q ++  A S  + +  E S + ++ IY + W +GLK     R
Sbjct: 659 MGERSIAPMGHVRMMAAIQPFLSGAISKTVNMPEEASIEDVEEIYFEGWKLGLKALAIYR 718

Query: 905 SRSATSVEKSTLKG 918
           +           KG
Sbjct: 719 NNCKVGQPLQDAKG 732


>gi|153820327|ref|ZP_01972994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
 gi|126509128|gb|EAZ71722.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
          Length = 408

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 108/422 (25%), Positives = 175/422 (41%), Gaps = 23/422 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 CGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +
Sbjct: 290 KCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVE 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++  
Sbjct: 350 GGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYENDPSI----KKKTVKALEIFTLLMQE 405

Query: 553 LF 554
             
Sbjct: 406 RA 407


>gi|313203094|ref|YP_004041751.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Paludibacter propionicigenes WB4]
 gi|312442410|gb|ADQ78766.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paludibacter propionicigenes WB4]
          Length = 851

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 149/687 (21%), Positives = 265/687 (38%), Gaps = 112/687 (16%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKETEKEK-- 337
            + LKY   F  + L  ++   +Y L  + G+  E+ P     R+A  +A  E +     
Sbjct: 13  ESTLKY---FKGDDLATKVWATKYALKDSFGNTYELNPDDMHRRLAKEIARIEKKYPNPL 69

Query: 338 RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENA 391
              E + L   F ++    S  T   +  +   LS+CF+     D       ++   E  
Sbjct: 70  SEDELFELFRDFKYIVPQGSPMTGIGNDFQVASLSNCFVIGFDGDSDSYGAIIKIDEEQV 129

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   
Sbjct: 130 QLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLS 188

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +   H D E F+D +  +G    +    N +  + D FMK    N  +T   P    +  
Sbjct: 189 VSIKHPDSETFIDAKMESG----KVTGANISVKLHDDFMKAAINNETYTQQYPVTSEN-- 242

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                     + + A A+W+K++   +++  P I F D     S
Sbjct: 243 ----------------------PWFTKNVDANAIWKKIVHNAWQSAEPGILFWDTITRES 280

Query: 572 PQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLA 622
                        S+N C EI L         C L +INL ++  N       FD++   
Sbjct: 281 VPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYINNPFTPQASFDFELFH 336

Query: 623 STIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGL 658
             +  A R++D++ID                              EK K      R  G+
Sbjct: 337 KHVGLAQRIMDDIIDLEMEKIDKIIAKIESDPEDEEIKNTEFQLWEKIKTKTSQGRRTGV 396

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G       L  L   Y + EA + +++  + ++  A  +SV +AQERGA+S +     + 
Sbjct: 397 GTTAEGDMLAALGFRYGTEEATDFSEKVHKAVALAAYRSSVTMAQERGAFSVYDAKREEN 456

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             +    I  L E   +             L + +   G RN  C+ IAPT T + +   
Sbjct: 457 NPY----IQRLREADPQ-------------LYEDMAKYGRRNIACLTIAPTGTTSIMTQT 499

Query: 779 SQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI--- 834
           +  ++P +  +Y  +  ++ +   V    ++E    D W+E ++   K+      N    
Sbjct: 500 TSGVEPVFMPVYTRRRKVNPNDKNVRVDFIDENG--DSWEEYVVFHHKFVTWMEANNYST 557

Query: 835 ---------ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
                    + I        ATA ++D +  ++   R QKW+D + S+ + L   + ++L
Sbjct: 558 TKRYTKEEVDEIVAKSPYYKATANDVDWLKKVQMQGRIQKWVDHSISVTINLPADATEEL 617

Query: 886 D-FIYRQAWLMGLKTTYYLRSRSATSV 911
              +Y +AW  G K     R  S   V
Sbjct: 618 VGKLYEEAWRCGCKGVTVYRDGSRAGV 644


>gi|239991245|ref|ZP_04711909.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 11379]
          Length = 965

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 136/640 (21%), Positives = 235/640 (36%), Gaps = 46/640 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 95  GLKQLIDR-IVKTYRKAGED---------NNYFASPADAEIFEHELAYALLHQIFSFNSP 144

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+  V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 145 VWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 203

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R
Sbjct: 204 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIR 263

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  GK    A         R  
Sbjct: 264 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRA---------RMT 314

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 315 GDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 374

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ A  +   +  +D  I       +K  +
Sbjct: 375 TS----CNLASLNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGE 430

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 431 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPY 490

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+      + D +  +   +   W ++ +     G RN+   
Sbjct: 491 DGYARNAEPHQRVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQAS 550

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  +    I  
Sbjct: 551 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEA 610

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 611 IVAHIAENGNVVDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 669

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L E  + + ++ +Y +AW MG+K     R         S 
Sbjct: 670 LPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSA 709


>gi|46981430|gb|AAT07701.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|94482187|gb|ABF21884.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482261|gb|ABF21957.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
          Length = 775

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 163/661 (24%), Positives = 280/661 (42%), Gaps = 69/661 (10%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ      D Y   +   ++E    FF+R+A  +  +     K A             
Sbjct: 122 LGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWT 181

Query: 340 ---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLA 394
                F+  L+    + +TP +   G      +SC+L        G        +   + 
Sbjct: 182 DVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVL 241

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G     +     ++  T  +++G++  LK+ +   +A+N   +R   VC Y+E 
Sbjct: 242 QSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEP 296

Query: 455 WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEV 507
           WH+D++  L  R     D+  R  ++    W PDLF +R         N  WTLF  +  
Sbjct: 297 WHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRA 355

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L  L+G+ F   Y   ER+           +    +   ++     TG P++ FKD C
Sbjct: 356 DILRTLHGEAFTSTYLRLEREGLG-----VSSVPIQDIAFTIIRSAAVTGSPFLMFKDAC 410

Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           N        G  +  SNLCTEI   + + +  VCNL SINL    +     F+ + L  T
Sbjct: 411 NRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLT 470

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            RT V  L+ V+       +K+ K    +R++G+G+ G  +    L     S  A  +  
Sbjct: 471 ARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNV 530

Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           +  E + +  +  S+E+ +  G   +  F  S + +G    D    ++            
Sbjct: 531 QIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTIS----------YL 580

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            LPW  L+  +   G+ NS  +A+ PT + A +   S+   P Y N++ K   SG+    
Sbjct: 581 DLPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRP 640

Query: 803 NSFLVNELKQRDLWDE---AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEIDPMW 855
           N  L++EL+     +E    +I+ L+ +  S+    G +      LK  + TAFE +   
Sbjct: 641 NLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK--YKTAFEYEQED 698

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGK-----KLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L++  + R  +IDQ+QS+ L+++E         K+  +  +A+  GLKT  YY + R AT
Sbjct: 699 LVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKAT 758

Query: 910 S 910
           +
Sbjct: 759 N 759


>gi|9625894|ref|NP_040142.1| ribonucleotide reductase subunit 1 [Human herpesvirus 3]
 gi|132612|sp|P09248|RIR1_VZVD RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|259645275|sp|Q4JQV6|RIR1_VZVO RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|60008|emb|CAA27902.1| ribonucleotide reductase (large subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981501|gb|AAT07777.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|66866037|gb|AAY57685.1| ORF19 [Human herpesvirus 3]
 gi|66866109|gb|AAY57756.1| ORF19 [Human herpesvirus 3]
 gi|83721827|emb|CAI44862.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|90992818|gb|ABE03037.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|91980320|gb|ABE67127.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481817|gb|ABF21519.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481891|gb|ABF21592.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481965|gb|ABF21665.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482039|gb|ABF21738.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482113|gb|ABF21811.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482335|gb|ABF22030.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482409|gb|ABF22103.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482483|gb|ABF22176.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482557|gb|ABF22249.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184727|gb|ABH08435.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|157965776|gb|ABW06922.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
          Length = 775

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 163/661 (24%), Positives = 280/661 (42%), Gaps = 69/661 (10%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA------------- 339
           LGLQ      D Y   +   ++E    FF+R+A  +  +     K A             
Sbjct: 122 LGLQSALKYEDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWT 181

Query: 340 ---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLA 394
                F+  L+    + +TP +   G      +SC+L        G        +   + 
Sbjct: 182 DVCRVFFTALACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVL 241

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G     +     ++  T  +++G++  LK+ +   +A+N   +R   VC Y+E 
Sbjct: 242 QSRGGVGISLQSL-----NLIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEP 296

Query: 455 WHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEV 507
           WH+D++  L  R     D+  R  ++    W PDLF +R         N  WTLF  +  
Sbjct: 297 WHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRA 355

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L  L+G+ F   Y   ER+           +    +   ++     TG P++ FKD C
Sbjct: 356 DILRTLHGEAFTSTYLRLEREGLG-----VSSVPIQDIAFTIIRSAAVTGSPFLMFKDAC 410

Query: 568 NIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           N        G  +  SNLCTEI   + + +  VCNL SINL    +     F+ + L  T
Sbjct: 411 NRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLT 470

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            RT V  L+ V+       +K+ K    +R++G+G+ G  +    L     S  A  +  
Sbjct: 471 ARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNV 530

Query: 685 ESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           +  E + +  +  S+E+ +  G   +  F  S + +G    D    ++            
Sbjct: 531 QIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTIS----------YL 580

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            LPW  L+  +   G+ NS  +A+ PT + A +   S+   P Y N++ K   SG+    
Sbjct: 581 DLPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRP 640

Query: 803 NSFLVNELKQRDLWDE---AMISDLKYHDGSI----GNIERIPDDLKKIHATAFEIDPMW 855
           N  L++EL+     +E    +I+ L+ +  S+    G +      LK  + TAFE +   
Sbjct: 641 NLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK--YKTAFEYEQED 698

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGK-----KLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           L++  + R  +IDQ+QS+ L+++E         K+  +  +A+  GLKT  YY + R AT
Sbjct: 699 LVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKAT 758

Query: 910 S 910
           +
Sbjct: 759 N 759


>gi|239982726|ref|ZP_04705250.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 924

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 134/639 (20%), Positives = 238/639 (37%), Gaps = 46/639 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E                  + E    E    L    F  ++P
Sbjct: 62  GLKQLIDR-IVKTYRKAGEE---------NNYFASPADAEIFEHELAYALLHQIFSFNSP 111

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 112 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 170

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  + +  +  R
Sbjct: 171 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEEKIR 230

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++        ++D + K  E       R    GE
Sbjct: 231 ALRDAGFDMDLGGDDITSVQYQNANNSVR-------VNDAFMKAVESGSTFGLRARMTGE 283

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
             V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E     +
Sbjct: 284 --VIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMHLDN 341

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      F+ ++ +  +   +  +D  I       +K  +
Sbjct: 342 TS----CNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKIGE 397

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  +   S ELA   G Y
Sbjct: 398 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVGPY 457

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +               A+       +  +   +   W ++ +     G RN+   
Sbjct: 458 DGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQAS 517

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 518 VIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMNYSEEQIEA 577

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 578 IVAHIAEHGNVIDAPA-LKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVN 636

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           L E  + + ++ +Y +AW +G+K     R         S
Sbjct: 637 LPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLS 675


>gi|29469209|gb|AAO65322.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces murayamaensis]
          Length = 826

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 132/603 (21%), Positives = 230/603 (38%), Gaps = 36/603 (5%)

Query: 351 FMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R 
Sbjct: 1   FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRS 60

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
               +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +  
Sbjct: 61  S-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVK 119

Query: 469 TGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             +  R   D      +  D       QNA  ++   DE     +  GK    A      
Sbjct: 120 EEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVETGGKFGLRA------ 173

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R    V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E
Sbjct: 174 ---RMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSE 230

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHT 642
                ++     CNL S+NL+    ++      F+ ++ A  +   +  +D  I      
Sbjct: 231 YMHLDNTS----CNLASLNLMKFLKDDGEGHQAFEVERFAKVVELVITAMDISICFADFP 286

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +K  ++    R +G+G     + L      Y S     +A      ++  +   S ELA
Sbjct: 287 TQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELA 346

Query: 703 QERGAYSSFKGSLW-DQGVFPIDSIGLLAEVR-DELA--MNRTSRLPWDELKKRVKTIGM 758
              G Y  +  +    Q V    +      VR D+L   +   +   W ++ +  +  G 
Sbjct: 347 AVVGPYDGYARNAAPHQRVMKQHADENTKAVRMDDLDSPIWAAATEAWQDVVRLGEKNGF 406

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT TI       +  ++P    +  K  + G    + +  V +  +R  + 
Sbjct: 407 RNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQ 466

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQA 870
              I  +  H    GN+   P  LK  H   F+       I  M  +   +  Q WI  A
Sbjct: 467 PEQIEAIVAHIAEHGNVIDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGA 525

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L E  + + ++ +Y +AW MG+K     R         S       K       
Sbjct: 526 LSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKAEVTEKA 585

Query: 930 DPN 932
           +  
Sbjct: 586 EAE 588


>gi|256375568|ref|YP_003099228.1| vitamin B12-dependent ribonucleotide reductase [Actinosynnema mirum
           DSM 43827]
 gi|255919871|gb|ACU35382.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Actinosynnema mirum DSM 43827]
          Length = 948

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 135/623 (21%), Positives = 234/623 (37%), Gaps = 36/623 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
                ET+ E    E   +L    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 117 AYFATETDAEVFEHELTWMLLHQVFSFNSPVWFNVGTASPQQVSACFILSVDDTMESILN 176

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 177 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 235

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H DVEEF+  +    D  R   D   A +  DL    +     QNA  +
Sbjct: 236 RAAKMVVLDVDHPDVEEFIQTKAREEDKIRALRD---AGFDMDLGGSDIVSVQYQNANNS 292

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  GKEF +          RG  +V   + A +L+RK+    +E   P 
Sbjct: 293 VRVSDEFMRAFEG-GKEFGLRS--------RGTGEVIETVDAKSLFRKLAQAAWECADPG 343

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           I +    N        G + +SN C+E     +S     CNL S+NL+    +   F+ D
Sbjct: 344 IQYDGTINDWHTTPESGRITASNPCSEYMHLDNSS----CNLASLNLMKFLGDDGSFNAD 399

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             A ++   +  +D  I           ++    R +G+G     + L      Y S   
Sbjct: 400 LFARSVELIITAMDISICFADFPTPAIGETTRAFRQLGIGYANLGALLMATGHAYDSEGG 459

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      +   +   S ELA   G Y  +  +                E+R    ++
Sbjct: 460 RALAASITSLMQAVSYRRSAELAGVVGPYDGYARNAESHKRIIRKHASANDEIRTLHAND 519

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
                 +   W   ++     G RN+    +APT TI  +    +  I+P    +  K  
Sbjct: 520 ADTRSLATAEWQRCQEIGAVNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKL 579

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAF-- 849
           + G    + +  V        +    +  +  H G  G++   P    +  ++   A   
Sbjct: 580 VGGGSMQIVNQTVPRALSALGYPTEQVEAIVEHIGEHGHVVDAPSLKLEHYEVFDCAMGE 639

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + + E  + ++++ +Y Q W MGLK     R   
Sbjct: 640 RSITPMGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEVYYQGWKMGLKALAIYRDNC 699

Query: 908 ATSVEKSTLKGVDGKLNAVPVTD 930
                 S  KG      A    +
Sbjct: 700 KVGQPLSAGKGAKASTAAEKAPE 722


>gi|298372704|ref|ZP_06982694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275608|gb|EFI17159.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 881

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 145/677 (21%), Positives = 273/677 (40%), Gaps = 107/677 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F+ + L  Q+  ++Y L  + G+  E  P+    R+A  +A  E +        E + L 
Sbjct: 46  FSGDELATQVWINKYALKDSAGNLYEKSPEDMHRRMAREIARIEAKYPNPMSEDELFELF 105

Query: 347 SSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ---ENAMLAKYSGGL 400
             F ++       T   +  +   LS+CF+  V          ++   E   L K  GG+
Sbjct: 106 DKFKYIVPQGGPMTGIGNSFQVSSLSNCFVVGVDGSSDSYGAIIKIDEEQVQLMKRRGGV 165

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V QGG R+GA+   +   H D E
Sbjct: 166 GHDLSAIRPEGSPVNNSALTSTGIVPFMERYSNSTREVAQGG-RRGALMLSISIKHPDSE 224

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FM+ V     +T   P +  +        F +
Sbjct: 225 KFIDAKL----EQNKITAANISVKIDDEFMRCVESGKQYTQQYPIDSPN------PTFSV 274

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                             KI A  LW K++   + +  P + F D     S       + 
Sbjct: 275 ------------------KIDAKKLWNKIIHNAWASAEPGVLFWDTIIRESVPDCYADLG 316

Query: 581 ----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L ++NL ++  N       F+++     +R A R+
Sbjct: 317 YKTVSTNPCGEIPLCPYDS----CRLLAVNLYSYVENPFTAMANFNFELFRKHVRYAQRI 372

Query: 632 LDNVIDINCH------------------------TIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                             +K K      R  G+G+      +
Sbjct: 373 MDDIIDLEIEKIDRILEKISSDPESEVVKRTEYELWQKIKDKCINGRRTGVGITAEGDMV 432

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             + + YAS EA++ A+   + ++  A  +SV +A+ERGA++ F     ++  F +    
Sbjct: 433 AAMGLRYASDEAIDFAENVQKVLAVEAYRSSVIMAKERGAFAVFDAKREEKNPFVMRLRE 492

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                               ++ + +K  G RN  C+ +APT T + +   +  I+P + 
Sbjct: 493 ADP-----------------QMYEDMKKYGRRNIACLTVAPTGTTSIMTQTTSGIEPVFL 535

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL------ 841
            +Y +     +    N  +     Q D W++  +   K+ D  + N   +          
Sbjct: 536 CVYTRK-RKVNPNDKNVTIDEVDAQGDSWEKFTVFHHKFVDWMVVNGYDVTKRYNEKELA 594

Query: 842 ------KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWL 894
                     AT+ ++D +  +    R QKW+D + S+ + L E + ++L D +YR+AW 
Sbjct: 595 ELIKKSPYYGATSNDVDWLNKVRLQGRIQKWVDHSISVTVNLPETATEELVDRLYREAWK 654

Query: 895 MGLKTTYYLRSRSATSV 911
           +G K     R+ S  +V
Sbjct: 655 VGCKGVTIYRAGSRGNV 671


>gi|302344178|ref|YP_003808707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
 gi|301640791|gb|ADK86113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
          Length = 604

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 161/662 (24%), Positives = 257/662 (38%), Gaps = 92/662 (13%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFYNLLSSFH 350
             ++L  RY       R E P+    RVA  +A  E   +        A  F+ L++   
Sbjct: 12  AAELLRRRYLAVGPDGRHESPERMLWRVARAVAAAEERWDGAASAAAMAGRFFELMAGGL 71

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+G R  QLS+CF+  V D L  IF AL++ A++ K  GG G D++ +R  
Sbjct: 72  FLPNSPTLINAGRRLGQLSACFVLPVEDSLESIFEALKQAALIHKSGGGTGFDFSRLRPR 131

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  +  T G S G + F+ V +    AV QGG R+GA  A L  WH D+ EF+  ++  G
Sbjct: 132 GDDVASTRGVSSGPLSFMHVFDVATEAVRQGGVRRGANMASLAAWHPDILEFVTAKQTPG 191

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               R  + N + W  D FM    Q  GW L +P                          
Sbjct: 192 ----RLENFNLSLWADDAFMDAAAQGRGWALRNP-------------------------- 221

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +    + A  L   +      +G P + F    N  +P   +G + + N C E  L
Sbjct: 222 -RHGRTVATLEAAELLEVVARAAHASGEPGMLFGGAINRANPTPALGAIEAVNPCGEQPL 280

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    C LGS+ L         D+  L      A R LD+V++IN   + +  +++
Sbjct: 281 LPYES----CVLGSLALPRFVRGGDMDWPALEEAAALATRFLDDVLEINRQPLPQVAEAS 336

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLGL+G   AL +L + Y S  A ++A   M  ++  A   S  LA+ RG + +
Sbjct: 337 LRTRKIGLGLLGLADALIMLGLAYDSQPARDLAGRVMARVTAAAREQSAALARRRGDFPA 396

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S                                   +       MRN+    IAPT 
Sbjct: 397 FANS---------------------------------APRAAGAKN-MRNATVSTIAPTG 422

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKYHDG 829
            ++ + G S  I+P +   Y +    G    +     +  L+   L   A ++ L+   G
Sbjct: 423 ALSLLLGWSSGIEPLFALHYHRHMQDGQVLELTCRPFLQRLRALGLDSPANLAALRA-QG 481

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
               ++ +P    ++ ATA +I P   +   +  Q+ +D   S  + L    +  ++  I
Sbjct: 482 RASAVQGLPAAEARLFATAHQIAPHDHLAMQAACQRHVDNGVSKTINLPSAATVGQVREI 541

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           + QA  + LK     R                  +  V    P +    +     C +  
Sbjct: 542 FLQAHALNLKGVTVFRHGCR--------------MEQVLRLSPAAEGARVEASGGCETPP 587

Query: 949 EC 950
            C
Sbjct: 588 SC 589


>gi|255037291|ref|YP_003087912.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
 gi|254950047|gb|ACT94747.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
          Length = 850

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 142/703 (20%), Positives = 258/703 (36%), Gaps = 101/703 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y L  + G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSFGAIYEATPDDMHHRIASEIARIEQRYPNPLSEAEIFDLI 85

Query: 347 SSFHFM---CSTPTLFNSGTRHPQLSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGL 400
             F ++    S  T   +  +   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KDFKYIIPQGSPMTGIGNPYQIASLSNCFVIGNNGESDSYGGIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGIVPFMERFSNSTREVAQDG-RRGALMLSVSIKHPDSE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+ V     +    P                
Sbjct: 205 SFIDAKMEQG----KVTGANVSVRIDDEFMQAVDAGTTYRQQYP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            + I A ALW+K++   +++  P I F D     S       + 
Sbjct: 245 --------IQSHTPTHIKDIDATALWKKIVHNAWQSAEPGILFWDTIIRESVPDCYADLG 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  +      +F++D     I  A R++D++
Sbjct: 297 YQTISTNPCGEIPLCAYDSCRLLAINLFSYVEDPFTDKAKFNWDLFKKHIAAAQRMMDDI 356

Query: 636 IDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    I+                          +   +  R  G+G+      L  L 
Sbjct: 357 IDLELEKIDAILQKIDEDPEDAEVKRVERNLWLNIQTKANEGRRTGIGITAEGDMLAALG 416

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S E    A E  + ++  A   SV  A+ERGA++ F         F +      A 
Sbjct: 417 LRYGSDEGNAFAVEIHKTVALEAYRGSVHTAKERGAFTIFDSEREKNNPFILRLKEADA- 475

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           +L   +   G RN   + IAPT T + +   +  I+P +  +Y 
Sbjct: 476 ----------------QLYYEMLEYGRRNIALLTIAPTGTTSLMSQTTSGIEPVFLPVYK 519

Query: 792 -KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI------------ERIP 838
            +  ++ +   V    V+E+   D W+E ++   ++      N             + + 
Sbjct: 520 RRRKVNPNDKDVRVDFVDEVG--DSWEEYVVFHHRFKQWMEVNGLDTSKNYAQKDLDELV 577

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-FIYRQAWLMGL 897
                  AT+ ++D +  ++     Q+W+D + S+ + +     ++L    Y +AW  G 
Sbjct: 578 KKSPYYKATSNDVDYLKKVKMQGAIQQWVDHSISVTINMPNDVTEELVGECYMEAWKAGC 637

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           K     R  S + V  S  +  +      P   P     +L  
Sbjct: 638 KGVTVYRDGSRSGVLISNTEKKEETQEGAPTPFPTERPQTLEA 680


>gi|317124572|ref|YP_004098684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
 gi|315588660|gb|ADU47957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
          Length = 970

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 139/652 (21%), Positives = 250/652 (38%), Gaps = 43/652 (6%)

Query: 303 DRYFLHINGS--RIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHF 351
            +YF    G+  R +  +    RV +         G    + + +    E    L    F
Sbjct: 76  TKYFRGAVGTEVREKSLKELIDRVVLTYVKGGKDHGYFATDEDAQIFEHELTYSLLHQVF 135

Query: 352 MCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             ++P  FN GT+ PQ +S+CF+  V D +  I    +E   + +   G G + + +R  
Sbjct: 136 SFNSPVWFNVGTKSPQQVSACFILAVEDSMDSILNWYKEEGKIFQGGSGAGLNLSRIRSS 195

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
              +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +   
Sbjct: 196 -KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKARE 254

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D  R   D   A +  DL  + +         +   V+        EF  A E   +  
Sbjct: 255 EDKIRALRD---AGFDMDLGGRDIVSVQYQNANNSVRVN-------AEFMRAVEEGTKFG 304

Query: 530 --DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R +  V  ++ A  L+ KM    +E   P I + D  N        G + +SN C+E
Sbjct: 305 LKARLDGSVIEEVDARELFHKMAQAAWECADPGIQYDDIINDWHTNPETGRITASNPCSE 364

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                +S     CNL S+NLL    ++  FD           +  +D  I       EK 
Sbjct: 365 YMSLDNSS----CNLASLNLLKFLRDDDTFDAATFQKVTELVITAMDISISFADFPTEKI 420

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++   +R +G+G     + L      Y S     +A      ++  A   S ELA   G
Sbjct: 421 AETTRNYRQLGIGYANLGALLMATGHGYDSEGGRALAAAITSLLTGAAYKRSAELAAVVG 480

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            Y+ +  +                 ++     +  +++ +   WD + K  +  G RN+ 
Sbjct: 481 PYAGYARNAEAHKRVMRKHQAANDTLKTVGVMDADIHQAATKAWDVVVKLGEKNGYRNAQ 540

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI  +    +  I+P +  +  K     G   +VN  +   LK+     E++
Sbjct: 541 ASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNLTIPRALKKLGYQQESI 600

Query: 821 ISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + ++Y  H G + +   +  +  +I  TA     I PM  +   +  Q ++  A S  +
Sbjct: 601 EAIVEYIAHKGHVIDAPGLKPEHYEIFDTAMGARAIAPMGHVRMMAATQPFLSGAISKTV 660

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            L E  + ++++ +Y Q W +GLK     R         S       +  A 
Sbjct: 661 NLPESATVEEIEDVYFQGWKLGLKALAIYRDSCKVGQPLSDGGSTAKEAQAA 712


>gi|254386108|ref|ZP_05001422.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
 gi|194344967|gb|EDX25933.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
          Length = 961

 Score =  357 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 140/640 (21%), Positives = 240/640 (37%), Gaps = 46/640 (7%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GL+ L DR  +       E    F             + E    E    L    F  ++P
Sbjct: 96  GLKQLIDR-IVKTYTKAGEDFDYF---------ASPADVEIFEHELTYALLHQIFSFNSP 145

Query: 357 TLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT  PQ +S+CF+ +V D +  I    +E  M+ K   G G + + +R     + 
Sbjct: 146 VWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSS-KELL 204

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            + G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +  R
Sbjct: 205 SSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEAFIETKVKEEEKIR 264

Query: 475 RTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              D      +  D       QNA  ++   DE     +  G EF +          R  
Sbjct: 265 ALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVE-NGTEFGLRS--------RMT 315

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +V  K+ A AL+RK+    +    P I +    N        G + +SN C+E     +
Sbjct: 316 GEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTCPESGRITASNPCSEYMHLDN 375

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           +     CNL S+NL+    ++      FD ++ A  +   +  +D  I       +K  +
Sbjct: 376 TS----CNLASLNLMKFLNDDGKGNQSFDAERFAKVVELVITAMDISICFADFPTQKIGE 431

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R +G+G     + L      Y S     +A      ++  A   S ELA   G Y
Sbjct: 432 NTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITSLMTGTAYKRSAELAAIVGPY 491

Query: 709 SSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D+       +D +  +   +   W ++ +  +  G RNS   
Sbjct: 492 DGYARNADAHKRVMKQHADANATAPRTQDLDNTIWAAATEAWQDVLRLGEKNGFRNSQAS 551

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI       +  ++P    +  K  + G    + +  V +  +R  + E  I  
Sbjct: 552 VLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEA 611

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY 876
           +  H    G +   P  LK  H   F+       I  M  +   +  Q WI  A S  + 
Sbjct: 612 IVTHIAEHGVVVDAP-GLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGAISKTVN 670

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + E  + ++++ IY +AW MG+K     R         S 
Sbjct: 671 MPETATVEEIEEIYFEAWKMGVKALAIYRDNCKVGQPLSA 710


>gi|42522732|ref|NP_968112.1| ribonucleotide-diphosphate reductase alpha subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|81617878|sp|Q6MNP6|NRDJ_BDEBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|39573928|emb|CAE79105.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 764

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 153/717 (21%), Positives = 274/717 (38%), Gaps = 76/717 (10%)

Query: 296 LGLQILYDRYFLHI----NGSRIEMPQAFFMRVAMGL----------ALKETEKEKRAVE 341
           L + I   +YF  +     G      +    RV   +               E +  A E
Sbjct: 55  LAIDIAASKYFRKVGVPKTGHET-SVRQMVDRVVKAIVASAIRQGGYFATRKEADIFAKE 113

Query: 342 FYNLLSSFHFMCSTPTLFNSG-----------------------------TRHPQLSSCF 372
              +L S     ++P  FN+G                                PQ S+CF
Sbjct: 114 LKFILLSQRGAFNSPVWFNAGLWEAYKAQSPSEHFAWDEKKKSIQATKNAYERPQCSACF 173

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + +V D +  IF   +  A L KY  G G++++ +R       G+ GKS G+I FL+V +
Sbjct: 174 IQSVDDSIESIFDLAKTEAKLFKYGSGTGSNFSKIRSKYEA-TGSGGKSSGLISFLEVLD 232

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             A A+  G   R+ A    ++  H +V +F+D +     + ++ H +  A    D   +
Sbjct: 233 KGAGAIKSGGTTRRAAKMVVVDIDHPEVLDFIDWKMR---EEQKAHLLIAAGLSADFEGE 289

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
                +G    + +    + D + K  E   E   +   R   KV R+I A  +W ++  
Sbjct: 290 AYRTVSG---QNANNSVRVSDAFMKAVEQ--ERPWKLKARLTGKVLREIPAGEVWNRITR 344

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +    P I F D  N         ++HSSN C+E        + + CNL SINL+   
Sbjct: 345 AAWMCADPGIQFHDTINKWHTCPETDIIHSSNPCSEYMFL----DDSACNLASINLVKFL 400

Query: 612 AN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +   FD++    T RT     + ++D + +  ++  +++H +R +GLG     S L   
Sbjct: 401 NDTGDFDFESFIHTARTLFVAQEILVDYSSYPTQRVAQNSHDYRPLGLGFANLGSLLMRK 460

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---GSLWDQGVFPIDSIG 727
            + Y S E    A      +S  A   S E+A+ +G ++ ++    S+         ++ 
Sbjct: 461 GVAYDSDEGRAWAGALTSLMSGVAYLTSSEMARAKGPFAGYRKNSKSMLKVMKMHERALN 520

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
            +A       +++  R  W  +    +  G RN+    IAPT TI  +    +  I+P +
Sbjct: 521 QVAWKMLPAGIDKAVRNLWKGVLYNGEKYGYRNAQATVIAPTGTIGLLMDCDTTGIEPDF 580

Query: 787 QNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKK 843
             +  K     G+  +VN  +   L     +++   + LKY   + S+    ++  +   
Sbjct: 581 SLIKFKKLVGGGEIQIVNQSVDAALASLQYFEDERQAILKYVEENNSVVGAPQMHPEDLP 640

Query: 844 IHATAFEI------DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
           +  TA  +       P   ++  +  Q +I  A S  + +    + + +  IY  AW +G
Sbjct: 641 VFDTATAMPGQRVLSPESHVKMMAAVQPFISGAISKTVNMPSTATEEDISRIYFLAWKLG 700

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +K     R  S  S     L   +       V  PN +       S     + C  C
Sbjct: 701 VKAVAVYRDGSKQSQP---LNLKEKPKVVEEVGVPNFTMKCPECGSDTVLTSGCYRC 754


>gi|314966769|gb|EFT10868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA2]
 gi|315093314|gb|EFT65290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL060PA1]
 gi|315103431|gb|EFT75407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA2]
 gi|327327595|gb|EGE69371.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL103PA1]
          Length = 950

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/651 (21%), Positives = 240/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|282854026|ref|ZP_06263363.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|282583479|gb|EFB88859.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|314981104|gb|EFT25198.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA3]
 gi|315091930|gb|EFT63906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA4]
          Length = 950

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/651 (21%), Positives = 240/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|314922993|gb|EFS86824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL001PA1]
          Length = 950

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/651 (21%), Positives = 240/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|289642421|ref|ZP_06474567.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
 gi|289507766|gb|EFD28719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
          Length = 976

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/651 (19%), Positives = 232/651 (35%), Gaps = 76/651 (11%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 119 GYFASPADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILN 178

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 237

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+ +F++ +    +  R   D                    N +  +
Sbjct: 238 RAAKMVVLDVDHPDIVDFVETKSREENKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 297

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V  +A + L +                           R + +    + A  L
Sbjct: 298 TDEFMRAVIDDADFDLRA---------------------------RLDGRTIETVRARTL 330

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +R +    ++   P I + D  N        G + +SN C+E     +S     CNL S+
Sbjct: 331 FRSIAQAAWDCADPGIQYDDTINDWHTCPESGRISASNPCSEYVHLDNSS----CNLASL 386

Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     +  FD D   + +   +  +D  I        +  +     R +G+G     
Sbjct: 387 NLMKFLRKDLSFDADAFVAAVELIITAMDISICFADFPTPEITRVTRMFRQLGIGYANLG 446

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +       ++  A   S E+A   GAY  F  +          
Sbjct: 447 ALLMATGHAYDSEGGRAMGAAITSLMTATAYRRSAEIAAALGAYDGFARNTDAHRRVIRK 506

Query: 725 SIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  VR    D+  +   +   W+  +   +  G RN+    + PT TI       +
Sbjct: 507 HAAATDAVRTVGVDDARVLAVAAREWERAQSVGEKHGWRNAQVSLLPPTGTIGLAMDCDT 566

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P    + +K  + G    + +  V    +   + E  I  +  +    G++   P 
Sbjct: 567 TGIEPDLALVKMKKMVGGSSMRIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVIDAP- 625

Query: 840 DLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            L++ H   F+       I PM  I   +  Q ++  A S  + +    + ++++ IY +
Sbjct: 626 GLRREHYEVFDCAIGERAITPMGHIRMMAAVQPFLSGAISKTVNMPTSATVEEVEQIYLE 685

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD--------GKLNAVPVTDPNSS 934
            W +GLK     R         S L+G           +  A P T P+  
Sbjct: 686 GWRLGLKALAIYRDNCKVGQPLSDLRGAKRSASGGAGEQTAAQPATAPSGE 736


>gi|167754049|ref|ZP_02426176.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
 gi|167658674|gb|EDS02804.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
          Length = 848

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 146/692 (21%), Positives = 261/692 (37%), Gaps = 107/692 (15%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETE 334
           ++ Y       ++ F  + L   +   +Y L  + G   E  P+    R+A  +   E +
Sbjct: 12  EVSYNEAVEASKKYFDGDDLAATVWVSKYALKDSYGHIYEKTPRDMHERIAAEIERIEKK 71

Query: 335 KEKRAV--EFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGA 386
                   E + LL  F ++       T   +  +   LS+CF+       D   GIF  
Sbjct: 72  YPNPMNRQEVFELLDHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRM 131

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+G
Sbjct: 132 DEEQVQLMKRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRG 190

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+   L   H D E F+D +     D  +    N +  I D FM+       +    P  
Sbjct: 191 ALMLTLSIKHPDAERFIDAK----VDTSKVTGANVSVKIDDEFMRAALAGKKYHQQFP-- 244

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                     +    + I A  LW K++   +++  P + F D 
Sbjct: 245 ----------------------IHSDKPLYQQDIDAKKLWDKIIHNAWKSAEPGVMFWDT 282

Query: 567 CNIRSPQQHVG----VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFD 617
               S             ++N C EI L         C L +INLL++          F+
Sbjct: 283 IIRESIPDCYADEGFTTVATNPCGEIPLCPYDS----CRLLAINLLSYVDKPFTKEASFN 338

Query: 618 YDKLASTIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTH 653
           ++K    +  A+R++D++ID                        +     +K +      
Sbjct: 339 FEKFKQHVEKAMRMMDDIIDLELEKIELIINKIAADPEDEDIRRVELELWKKIRTMARKG 398

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R  GLG+      L  L + Y +PEA   A +  + ++  A  ASV++A ERGA+  F  
Sbjct: 399 RRTGLGITAEGDMLAALGLRYGTPEATAFAVKVQKTLALEAYRASVKMAAERGAFEIFDA 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
              ++       IG + E                EL   +   G RN   + IAPT T +
Sbjct: 459 RKEEKNPM----IGRIREADP-------------ELYAEMVKHGRRNIAMLTIAPTGTTS 501

Query: 774 NICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYHD 828
            +   +  I+P ++ +Y  +  ++          V+++    ++ +++    +  L+ + 
Sbjct: 502 LMSQTTSGIEPVFRPVYKRRRKINPSDQDAKVAFVDDMGEKFEEYNVYHHNFVKWLEANG 561

Query: 829 GSIGNIERIPDDL--------KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                ++ I DD             ATA +ID +  ++     QKW+D + S+ + L   
Sbjct: 562 YDTSKLQDISDDELNRWVAASPYHGATANDIDWVAKVKMQGEIQKWVDHSISVTVNLPND 621

Query: 881 SGKKL-DFIYRQAWLMGLKTTYYLRSRSATSV 911
             + L   +YR AW  G K     R      V
Sbjct: 622 VSEALVADVYRTAWECGCKGVTVYRDGCREGV 653


>gi|89901782|ref|YP_524253.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89346519|gb|ABD70722.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 589

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 147/620 (23%), Positives = 245/620 (39%), Gaps = 68/620 (10%)

Query: 300 ILYDRYFLHINGSRIEMP-QAFFMRVAMGLALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           +   RY     GS  E   +  + RVA+ ++  E   +    E +  +LS + F+     
Sbjct: 14  VWRTRYLWAEPGSVPEPAIENTWARVALAVSGAEPHHQNDWRERFLAMLSDWRFLPGGRI 73

Query: 358 LFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           L  +GT       +   +  + D + GIF AL+E     +  G +G D++ +R   A   
Sbjct: 74  LAGAGTSRRVTLFNCLAMGPIEDSVQGIFNALREAMQCLQAGGAIGIDFSTLRPALALAQ 133

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            +   + G + F+ V       +  G +R+ A+ A L   H D+E F+D + +TG     
Sbjct: 134 SSGAVASGPVSFMNVWQAANAVLEAGNRRRSAMLATLRCDHPDIEAFIDAKLDTG----A 189

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG--- 532
                 +  + D FM+ + ++  W L  P        L      +  E  ER    G   
Sbjct: 190 LSHFKLSVLLNDEFMQALQEDGPWPLVFP--------LGEHPIPVGGEVCERVWSDGGPP 241

Query: 533 -EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V R++ A ALW K+L     +G P + F D  N  +   +   +  +N    + L 
Sbjct: 242 QLCMVHRRVPARALWEKLLQAQHASGEPGVLFIDRINRANNLWYDEHLTVANPDGGVPLP 301

Query: 592 SSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   CNLGSINL         A+   D   L +    A R LD+V DI+   ++  
Sbjct: 302 PW----GACNLGSINLSRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQ 357

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KS    R IGLG+ G    L +L + Y S  ++++  E M  I   A   SVELAQE+G
Sbjct: 358 QKSALASRRIGLGVTGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELAQEKG 417

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+ +     +    F ++                        L+  +   G+RNS+ +A+
Sbjct: 418 AFPACDKLKYGASPFVLELDR--------------------ALQDAIAQHGIRNSHLLAV 457

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT +I+ +    S  I+P      ++     +   V  F V +   R            
Sbjct: 458 APTESISLLANNVSNGIEPMRAFQAMRRVRGAEGQAVF-FDVEDAACRQ----------- 505

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
            +    G     P         A ++     ++  +  Q  +D A S  +YL    S + 
Sbjct: 506 -YQALHGPDAPWPKH----FVQAADVSAEDQLQLMAAVQSHVDNALSKTVYLPASASVQD 560

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           +  + +QAW +GLK     R
Sbjct: 561 VGLVLQQAWELGLKGCSVER 580


>gi|158313087|ref|YP_001505595.1| vitamin B12-dependent ribonucleotide reductase [Frankia sp.
           EAN1pec]
 gi|158108492|gb|ABW10689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EAN1pec]
          Length = 1011

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 130/613 (21%), Positives = 233/613 (38%), Gaps = 36/613 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    E++ E    E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 110 GYFASESDAEIFEHELTWMLLHQVFSFNSPVWFNVGTAAPQQVSACFILAVDDTMESILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV----TQNAGWT 500
           + A    L+  H DV EF++ +    D  R   D   A +  DL  + +     QNA  +
Sbjct: 229 RAAKMVVLDVDHPDVVEFVETKAREEDKIRALRD---AGFDMDLGGRDIASVQYQNANNS 285

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE      + G  F++          R + +V   + A  L+R +    +E   P 
Sbjct: 286 VRVNDEFMRAV-VDGTSFDLR--------ARLDNRVIESVDARGLFRTISQAAWECADPG 336

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           I +    N        G + +SN C+E     +S     CNL S+NL+     +  FD +
Sbjct: 337 IQYDGTINDWHTCPESGRISASNPCSEYVHLDNSS----CNLASLNLMKFLRPDRTFDTE 392

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              +++   +  +D  I        +  K    +R +G+G     + L      Y S   
Sbjct: 393 TFVASVELIITAMDISICFADFPTPEITKVTRAYRQLGIGYANLGALLMASARAYDSDGG 452

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      ++  A   S ELA   GAY  F  +                 VR    +E
Sbjct: 453 RALAAAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVRKHSAANDAVRTVHAEE 512

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
             +   +   W+      +  G RN+    +APT TI       +  I+P    + +K  
Sbjct: 513 ARLITAASKEWERALSVGEKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKL 572

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKIHATAF-- 849
           + G    + +  V    +   + E  I  +  +    G++   P    +  ++   A   
Sbjct: 573 VGGASMKIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVVDAPGLRTEHYEVFDCAIGD 632

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + +    +  +++ IY + W +GLK     R   
Sbjct: 633 RAISPMGHVRMMAAVQPFLSGAISKTVNMPATATVAEVEEIYLEGWRLGLKALAIYRDNC 692

Query: 908 ATSVEKSTLKGVD 920
                 + +KG  
Sbjct: 693 KVGQPLTDVKGAK 705


>gi|84495900|ref|ZP_00994754.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
 gi|84382668|gb|EAP98549.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
          Length = 987

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/625 (21%), Positives = 233/625 (37%), Gaps = 45/625 (7%)

Query: 319 AFFMRVAMGL---------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-L 368
               RV +              + + E    E    L    F  ++P  FN GT  PQ +
Sbjct: 94  QLIDRVVLTYVKAGKEHDYFSSDEDAELFEHELTYALLHQVFSFNSPVWFNVGTASPQQV 153

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           S+CF+  V D +  I    +E   + K   G G + + +R     +  + G + G + F+
Sbjct: 154 SACFILAVDDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFM 212

Query: 429 KVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           + A+ +A  +  G   R+ A    L+  H D+ EF++ +    D  R   D   A +  D
Sbjct: 213 RGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREEDKIRALRD---AGFDMD 269

Query: 488 LFMKRVT----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           L  K +     QNA  ++   DE     +  G EF +          RG+  V   I A 
Sbjct: 270 LGGKDIVSVQYQNANNSVRVNDEFMRAVEE-GTEFGLKS--------RGDGSVIETIDAR 320

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L  K+    +E   P I + D  N        G + +SN C+E     +S     CNL 
Sbjct: 321 ELMGKIAKAAWECADPGIQYDDTINDWHTNPETGRITASNPCSEYMSLDNSS----CNLA 376

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NLL    ++  FD  K        +  +D  I       E   K+   +R +G+G   
Sbjct: 377 SLNLLKFLKDDDTFDVVKFQQVAELVITAMDISICFADFPTEPIAKTTRDYRQLGIGYAN 436

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
             + L      Y S     +A      ++  A   S E+A   G Y+ +  +        
Sbjct: 437 LGALLMATGHGYDSDGGRALAASITSLLTGAAYKRSAEIAGVVGPYAGYARNADAHKRVM 496

Query: 723 IDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                    +R     +  ++R +   WD + K  +  G RN+    +APT TI  +   
Sbjct: 497 RKHASANDSIRTMQTMDKDIHRAATKAWDAVVKVGEKNGYRNAQASVLAPTGTIGFMMDC 556

Query: 779 -SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P +  +  K  + G    + +  +    ++  + E  +  +       G++   
Sbjct: 557 DTTGIEPDFSLVKFKKLVGGGSMQIVNLTIPRALRKLGYTEETVEAIVEFIADKGHVIDA 616

Query: 838 PD---DLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
           P    +  +I  TA     I  M  +   +  Q ++  A S  + L E  S +++  +Y 
Sbjct: 617 PGLKTEHYEIFDTAMGARSISAMGHVRMMAATQPFLSGAISKTVNLPEDASVEEIQDVYM 676

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
           Q W MGLK     R         S 
Sbjct: 677 QGWKMGLKALAVYRDSCKVGQPLSD 701


>gi|18653875|ref|NP_570809.1| large ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494973|gb|AAD21395.1| large ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 788

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 177/757 (23%), Positives = 301/757 (39%), Gaps = 99/757 (13%)

Query: 252 YPEYFCRYIEEGVKARL-LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           Y   F   + + V+A +  HE+ +D  L        Y       YL     YD Y L   
Sbjct: 77  YLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNFVNCGYLSAVRFYDTYVLRTQ 136

Query: 311 GS--RIEMPQAFFMRVAMGLALK-------------------ETEKEKRAVEFYNLLSSF 349
           GS    E     FMRVA+ +A +                   E ++       ++ +SS 
Sbjct: 137 GSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQ 196

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              C+TP L ++G R  QLSSCF+   ++  +   +    +E + L     G+G D +  
Sbjct: 197 IVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVSSF 256

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                       + + +   LK+ N      N    R     AY+E WH  + +FL+ + 
Sbjct: 257 -----------AEHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAKM 305

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENY 525
               +  R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI    Y
Sbjct: 306 PENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EY 360

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNL 584
            R    G+      +   ++   ++  + +TG P++  K+  N     +  G  ++ SNL
Sbjct: 361 NRLVAAGKH--SSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNL 418

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRV 631
           C EI       + +VCNL +I+L                  +  F ++ L   +  AV +
Sbjct: 419 CAEIVQQP-EGQASVCNLANISLPKCLRPHRGESGVEPGKGDVTFGFELLDDAVEAAVII 477

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  I       E  ++     R++G+G+ G       L   Y   E+ ++  E  + + 
Sbjct: 478 VNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQAMY 536

Query: 692 FHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           F A+  S E  L  E   +  ++ S   QGVF   +        D +  +      W++L
Sbjct: 537 FTAVQTSHEIVLLGEGTPFRGWERSRLAQGVFHWQTW-------DGVKPSHPPLERWEQL 589

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + +   G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N      
Sbjct: 590 GRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKR 649

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +K  DL        ++ + G + +      D  KI  TAF+  P+  +E A  R  ++DQ
Sbjct: 650 VKPGDL------RTVRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQ 703

Query: 870 AQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNA 925
           +QSLN +L E   +    +  +    + +GLKT  YY R +  T            KLNA
Sbjct: 704 SQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCRIQKQT------------KLNA 751

Query: 926 VPVTD----PNSSTHSLGIPSSCTSDTE----CEVCQ 954
           +   D     N S+          +D E    C  CQ
Sbjct: 752 LQCLDQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788


>gi|325104223|ref|YP_004273877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
 gi|324973071|gb|ADY52055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
          Length = 854

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 145/678 (21%), Positives = 260/678 (38%), Gaps = 109/678 (16%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  ++  ++Y L  + G+  E  P     R+A  +A  E++      E   + L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSSGNLYEKTPDDMHRRIASEIARIESKYPNPLSESDVFELI 85

Query: 347 SSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    S  T   +  +   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KNFKYIIPQGSPMTGIGNPFQIASLSNCFVIGNDGESDSYGGIMKIDQEQIQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG-RRGALMLSVSIEHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+ V +++ +    P                
Sbjct: 205 RFIDAKMEQG----KVTGANVSVRITDAFMQAVEKDSDFVQRYPIGAE------------ 248

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       +     KI A  LW K++   + +  P I F D     S       + 
Sbjct: 249 ------------KPIFSNKIKAKELWDKIVHNAWRSAEPGILFWDTIINESVPDCYADLG 296

Query: 581 ----SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L +INL ++  N       F+++     I  A R+
Sbjct: 297 YKTVSTNPCGEIPLCPYDS----CRLLAINLYSYVENPYTKAASFNFELFKKHIGFAQRI 352

Query: 632 LDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+    +                           ++     R  G+G+      L
Sbjct: 353 MDDIIDLELEKVNDILAKIDSDPEEDETKRVEKNLWLNIRRKAEEGRRTGIGITAEGDML 412

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y S E +  + +  + I+  A  +SV  A+ERGA+  F         F    I 
Sbjct: 413 AALGLRYGSDEGISFSVDIHKLIAIEAYRSSVTAAKERGAFPIFDAEREKNNPF----IK 468

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            LAE                +L   +   G RN   + IAPT T + +   +  I+P + 
Sbjct: 469 RLAEAD-------------SKLYYEMLEYGRRNIALLTIAPTGTTSLMSQTTSGIEPVFM 515

Query: 788 NLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL------------KYHDGSIGNI 834
            +Y  +  ++ +   V    V+E+   D W+E ++                  + S   +
Sbjct: 516 PVYKRRRKVNPNDKNVRIDFVDEVG--DSWEEYVVFHHGFKTWMETNGFDIERNYSNEEL 573

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-FIYRQAW 893
           + +        AT+ ++D +  +      QKW+D + S+ + +     ++L   +Y +AW
Sbjct: 574 DELVKQSPYYKATSNDVDYLKKVHMQGAIQKWVDHSISVTINMPNDVSEELVGALYMEAW 633

Query: 894 LMGLKTTYYLRSRSATSV 911
             G K     R  S + V
Sbjct: 634 KSGCKGVTVYRDGSRSGV 651


>gi|196046537|ref|ZP_03113762.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225863314|ref|YP_002748692.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228914022|ref|ZP_04077644.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229183643|ref|ZP_04310866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|196022721|gb|EDX61403.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225789936|gb|ACO30153.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228599886|gb|EEK57483.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|228845627|gb|EEM90656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 563

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 143/569 (25%), Positives = 253/569 (44%), Gaps = 39/569 (6%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MN 739
              +++++I  S+E+A+E+   +  F  S +  G +      ID   +  +V+   A ++
Sbjct: 474 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++  W++LK++V   G+ N+     AP
Sbjct: 534 IPTKEDWNQLKRQVMEHGLYNA-LTCSAP 561


>gi|118476920|ref|YP_894071.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416145|gb|ABK84564.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bacillus thuringiensis str. Al Hakam]
          Length = 575

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 143/569 (25%), Positives = 253/569 (44%), Gaps = 39/569 (6%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MN 739
              +++++I  S+E+A+E+   +  F  S +  G +      ID   +  +V+   A ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++  W++LK++V   G+ N+     AP
Sbjct: 546 IPTKEDWNQLKRQVMEHGLYNA-LTCSAP 573


>gi|258654101|ref|YP_003203257.1| vitamin B12-dependent ribonucleotide reductase [Nakamurella
           multipartita DSM 44233]
 gi|258557326|gb|ACV80268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nakamurella multipartita DSM 44233]
          Length = 988

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 131/620 (21%), Positives = 230/620 (37%), Gaps = 28/620 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    E + E    E   +L    F  ++P  FN GT+ PQ +S+CF+ +V D +  I  
Sbjct: 127 GYFATEQDTEIFEHELTWMLLHQVFAFNSPVWFNVGTKSPQQVSACFILSVDDTMDSILN 186

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 187 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFS 503
           + A    L+  H D+ EF++ +       R   D      +  D  +    QNA  ++  
Sbjct: 246 RAAKMVVLDVDHPDIAEFVETKAREEHKIRVLRDAGFDMDLGGDDIISVQYQNANNSVRV 305

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            DE     D    E             R   +V   + A  L+ K+    +E   P I +
Sbjct: 306 SDEFMRAVDADTDEGASFG-----LRARQTGEVIETVDARELFGKITQAAWECADPGIQY 360

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLA 622
            D  N        G + +SN C+E     +S     CNL S+NL+     +  FD    A
Sbjct: 361 DDTINDWHTSPESGRISASNPCSEYMHLDNSS----CNLASLNLMKFLSEDGTFDAPTFA 416

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +   +  +D  I       +   ++   +R +G+G     + L      Y S     +
Sbjct: 417 RAVEFVITAMDISICFADFPTQPIAETTRAYRQLGIGYANLGALLMATGHAYDSEGGRSL 476

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAM 738
           A      ++  A   S ELA   G Y  +  +                 VR    ++ A+
Sbjct: 477 AAAITSLMTGVAYRRSAELAGVVGPYEGYARNADAHKRVIRKHAAANDYVRSIGGNDGAV 536

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
            + +   W +     +  G RN+    +APT TI  +    +  I+P    +  K  + G
Sbjct: 537 LKLATTVWQDTVAIGERNGYRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGG 596

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE------- 850
               + +  V    +   +    I  +  +    G++   P  L++ H + F+       
Sbjct: 597 GSMQIVNQTVPGALKSLGYQAESIEAIVEYIAEHGHVVDAP-GLRREHYSVFDCAMGERS 655

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PM  +   +  Q +I  A S  + + E  +   +  IY+Q W MGLK     R     
Sbjct: 656 IAPMGHVRMMAAVQPFISGAISKTVNMPEHATVADVAEIYQQGWKMGLKALAIYRDNCKV 715

Query: 910 SVEKSTLKGVDGKLNAVPVT 929
               S      G+ +A    
Sbjct: 716 GQPLSASNKNHGEKSADASV 735


>gi|329738367|gb|AEB97331.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
          Length = 786

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 177/703 (25%), Positives = 278/703 (39%), Gaps = 96/703 (13%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV---------------E 341
             Q     Y   +   ++E    FF R++   A       + A                 
Sbjct: 135 SAQKYESLYLGKLGNGKLESMGQFFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTR 194

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM----LAKYS 397
           F+  LSS   +  TP +   GT     +SCFL  +         A    A     +    
Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFL--IDSSGRNTREAFNVVAEEVIPIMNNR 252

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G              G      G + FLK  +    A N   KR   +C Y E WH 
Sbjct: 253 GGIGISL--------PCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHC 304

Query: 458 DVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYG 515
           D  + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  + WTLF       L +L+G
Sbjct: 305 DTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRGEHLSNLFG 363

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  YE  ER     E      I    +  +++     TG P++ FKD  N       
Sbjct: 364 EEFEKEYERLER-----ENVGVATIPITEIMFQIIKSAVSTGTPFVVFKDAFNRHYFYNM 418

Query: 576 VGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLAST 624
               +  SNLCTEI   + S+   VCNL SINL A   N +          FDY+ L  T
Sbjct: 419 QHRALKCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSFFDYELLRET 478

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            RTA    + +I +     ++A+  NH  R++G+G+ G  +A  +      S E  E  D
Sbjct: 479 ARTATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFND 538

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E ++      S  L +     +  ++ S +  G   ID                  +
Sbjct: 539 TVFELLALETTGISCRLCELGLPPFDKYRESYYALGWLHIDGWPNTK---------LRYK 589

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD L+ R+   G+ N   +A+ PTA+ + I  VS+   P + N++ K + +G+    +
Sbjct: 590 NEWDSLRHRIDQSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPH 649

Query: 804 SFLVNELKQRDLWD---EAMISDLKYHDGSIG---NIERIPDDLKKIHATAFEIDPMWLI 857
             L++ + +        +A +++LK H  S+            +     TAFE+D   L+
Sbjct: 650 LALMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQTAFELDQEKLL 709

Query: 858 ESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
             ++RR  +ID +QS  LY+ E      S  ++  + + A+  GLKT  YY + R  T+ 
Sbjct: 710 YLSARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN- 768

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                    +     SC     C  CQ
Sbjct: 769 -------------------------NGVFVGSCGDSLICSACQ 786


>gi|229090404|ref|ZP_04221647.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
 gi|228692987|gb|EEL46705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
          Length = 563

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 251/569 (44%), Gaps = 39/569 (6%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 359 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 413

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 414 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 473

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++
Sbjct: 474 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIH 533

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++  W++LK++V   G+ N+     AP
Sbjct: 534 IPTKEDWNQLKRQVMEHGLYNA-LTCSAP 561


>gi|288920762|ref|ZP_06415062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
 gi|288347838|gb|EFC82115.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
          Length = 1009

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 128/629 (20%), Positives = 232/629 (36%), Gaps = 40/629 (6%)

Query: 314 IEMPQAFFMRVA---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LS 369
           I+     +  VA    G    E + E    E   +L    F  ++P  FN GT  PQ +S
Sbjct: 95  IDRVVHRYA-VAGRENGYFASEDDAETFEHELTWMLLHQVFSFNSPVWFNVGTSAPQQVS 153

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +CF+  V D +  I    +E  ++ K   G G + + +R     +  + G + G + F++
Sbjct: 154 ACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMR 212

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            A+ +A  +  G   R+ A    L+  H D+ EF++ +    D  R   D   A +  DL
Sbjct: 213 GADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREEDKIRALRD---AGFDMDL 269

Query: 489 FMKRV----TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
             + +     QNA  ++   DE      + G  F++          R + +V   + A  
Sbjct: 270 GGRDIASVQYQNANNSVRVNDEFMRAV-VDGTSFDLR--------ARLDNRVIESVDARG 320

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           L+  +    +E   P I +    N        G + +SN C+E     +S     CNL S
Sbjct: 321 LFTTIAQAAWECADPGIQYDGTINDWHTCPESGRISASNPCSEYVHLDNSS----CNLAS 376

Query: 605 INLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +NL+     +  FD +   +++   +  +D  I        +       +R +G+G    
Sbjct: 377 LNLMKFLRPDRTFDAEAFVASVELIITAMDISICFADFPTPEITTVTRAYRQLGIGYANL 436

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L      Y S     +A      ++  A   S ELA   GAY  F  +         
Sbjct: 437 GALLMASARAYDSEGGRSLAAAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVR 496

Query: 724 DSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                   VR    ++  +   +   W+      +  G RN+    +APT TI       
Sbjct: 497 KHAAANDAVRAVHTEDARLIAAASKEWERALSVGEKNGWRNAQVSLLAPTGTIGLAMDCD 556

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  I+P    + +K  + G    + +  V    +   + E     +       G++   P
Sbjct: 557 TTGIEPDLALVKMKKLVGGASMKIVNQTVPAALRALGYPEETTEAIVEFIAEHGHVVDAP 616

Query: 839 ---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
               +  ++   A     I PM  +   +  Q ++  A S  + +    +   ++ IY +
Sbjct: 617 GLRPEHYEVFDCAIGDRAISPMGHVRMMAAVQPFLSGAISKTVNMPSTATVADVEEIYLE 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            W +GLK     R         + +KG  
Sbjct: 677 GWRLGLKALAIYRDNCKVGQPLTDVKGAK 705


>gi|327330249|gb|EGE71998.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL097PA1]
          Length = 950

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|10834910|ref|NP_066871.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 3]
 gi|5102911|dbj|BAA78728.1| UL39 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689311|dbj|BAA82935.1| UL39 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800004|dbj|BAB16549.1| UL39 protein [Gallid herpesvirus 3]
          Length = 797

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 167/670 (24%), Positives = 281/670 (41%), Gaps = 77/670 (11%)

Query: 296 LGLQ--ILYDRYFLHINGSRIEMPQAFFMRV------------AM--GLALKETEKEKRA 339
           LGLQ  + Y+ Y   +   + E    FF+R+            A    L  + +  E   
Sbjct: 149 LGLQSALKYEEYLTELEDGKKESLCQFFVRLAAAAATEASNKKAFMSALGTEVSTWETAF 208

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML----AK 395
             F+  L+   F+ STP +   G      +SC+L  +          L+  A        
Sbjct: 209 TAFFFALARQIFVPSTPCMLFLGREGTSTASCYL--MDPRTINTHDTLKAIADDIVPHLL 266

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G     +            +  G++P +KV +   +A N G +R   VC YLE W
Sbjct: 267 ARGGIGISLQHL-----------NQKTGLMPVMKVLDSLVMAANAGERRPTGVCVYLEPW 315

Query: 456 HIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVS 508
           H D+   L++R     ++ RR  ++  A W  DL  KR  ++A       WTLF     S
Sbjct: 316 HADIMSALNMRGMMATEESRRCDNVFIALWTCDLLFKRYERHANGEKNVTWTLFDSR-AS 374

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L  L+G EFE  Y   E +           +    L   ++     TG P+I FKD CN
Sbjct: 375 ILATLHGSEFEKEYNRLEAEGLG-----VASLPVRDLMFAIIKSAASTGSPFILFKDACN 429

Query: 569 IRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLAS 623
                   G  +  SNLCTEI   +      VC+L S+NL           +FD+  L  
Sbjct: 430 KHYITDTQGDAIAGSNLCTEIIQKTDGNTNGVCSLVSVNLARCVFDENGEKKFDFSALRR 489

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +R A   +++++  +     K++     HR++G+G+ G  +AL  + +  +      + 
Sbjct: 490 AVRLATVFVNSIMSSSDVPTAKSRSGKDRHRSMGIGVQGLHTALLSMGLDLSDERVKPLN 549

Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            +  E +   A++ S E  +    A++ F  S + +G    D    +     E       
Sbjct: 550 KQIFELMLLEAMTVSCEFCEGGLPAFADFSNSYYSRGRLHFDGWANVGLSMPE------- 602

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W+ L++R++  G+ N+  +A+ PTA  A +  VS+S  P + N++ K   +G+    
Sbjct: 603 --EWNALRERIQASGLYNAQFVALMPTAASAQVTEVSESFLPVFSNMFNKVTTAGELLRP 660

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--------DGSIGNIERIPDDLKKIHATAFEIDPM 854
           N+ L+ EL++    +E                 + ++GN       LK  + TAFE D  
Sbjct: 661 NNQLMGELREIYADNEDRRLKAIAALECANWCVETALGNKPECSQLLK--YKTAFEYDQS 718

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSA 908
            LI+  + R  ++DQ+QS+ L++ E +   L       +  +A+  GLKT  YY + R A
Sbjct: 719 LLIDLCADRAPFVDQSQSMTLFVTEAADGTLLASHVMNLLLRAYKAGLKTGMYYCKIRKA 778

Query: 909 TSVEKSTLKG 918
           T+    +  G
Sbjct: 779 TNAGVFSGNG 788


>gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 1103

 Score =  354 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 234/462 (50%), Gaps = 43/462 (9%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLS 183
            P+   + ++  DG+  + +  ++   ++  C               +GL  V    +++
Sbjct: 4   RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPINSKPVYKGSRAMTGLS-VDVSKIVA 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
               ++ DG+S   L+      S ++  + P+Y  + AR  +  L+++            
Sbjct: 63  SVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQT----------- 111

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
            H ++   Y E       +  +    H            + + Y+RD+ F+Y G + +  
Sbjct: 112 -HDKITDAYAEIAHLLSNDFKENIEKHADEYQ-------SFIDYDRDYDFDYFGFKTMER 163

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y   +N   +E PQ  ++RVA+GL   +     R  E Y+ LS   F  ++PTLFN+G 
Sbjct: 164 LYLTKVNNKIVERPQHVYLRVAIGLWGSDI---ARVKETYDALSCRKFTHASPTLFNAGF 220

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  QL+SCFL TV D L  I+  L + A L+K+ GGLG + + +RG G+ I+GTNG+S G
Sbjct: 221 KKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDG 280

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P LKV + T+   NQGG+RKG+   YLE  H DV +FL +++N G++  R  ++  A 
Sbjct: 281 IVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHSDVMDFLLMKRNQGEESLRARNLFYAV 340

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+ DLFMKRV  +A W+LF P E   L D +G E+   YE YE +     +     + A 
Sbjct: 341 WLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEAEGKAKNV-----VKAR 395

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +W  M+T + ETG P+++ KD  N ++ Q + G +  SNLC
Sbjct: 396 DVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLC 437



 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 128/357 (35%), Positives = 200/357 (56%), Gaps = 14/357 (3%)

Query: 565  DPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            D      P++H+GV +   +  C EI   +S EETAVC +GS+ L  +  N++FD+D L 
Sbjct: 751  DTYCFNEPKRHMGVFNGVITGQCNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLR 810

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++   + LD  ID+  + I++A+ SN   R IG+G+ G Q     L   Y SPEA ++
Sbjct: 811  KNVKILAKNLDRSIDVMAYPIKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDL 870

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
              E  E I + A+ ASVELA+  G Y +F+GS   +G+       +  +          S
Sbjct: 871  NREIFEHIYYAAVEASVELAEIHGPYPTFEGSPASKGILQYHLWDVTPK----------S 920

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
             L W  L++RVK  G+RNS   A+ PTA+ A ICG  ++ +P   NLY +  ++G+F V+
Sbjct: 921  NLDWRGLEERVKK-GIRNSLVTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVI 979

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            NS+LV EL +R  W+E M + +  + GSI  +  I   +K ++ TA+++    +I+ AS 
Sbjct: 980  NSYLVRELIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMASD 1039

Query: 863  RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKG 918
            R  ++DQ QS+NL+L +P+ K +  +    W  GLKT  YYLRS+ A+S    T+  
Sbjct: 1040 RGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPASSAIAVTIDN 1096


>gi|284046866|ref|YP_003397206.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
 gi|283951087|gb|ADB53831.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
          Length = 963

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 128/635 (20%), Positives = 240/635 (37%), Gaps = 41/635 (6%)

Query: 304 RYFL-HINGSRIE-MPQAFFMRVAMGLA---------LKETEKEKRAVEFYNLLSSFHFM 352
           +YF   +N +  E   +    RVA  +A             + +    E  ++L      
Sbjct: 77  KYFRGQLNTAARERSVRQMIGRVAGTIATWGRQRGYFATREDGDVFEAELTHILLHQLAA 136

Query: 353 CSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++P  FN G    PQ S+CF+ +V D +  I G   +   + +   G G + + +RG  
Sbjct: 137 FNSPVWFNVGFEEQPQCSACFILSVEDTMESILGWNTKEGNIFRGGSGSGINLSNIRGSM 196

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTG 470
             +    G + G + F++ A+  A  +  GGK R+ A    L+  H DV+EF+  +    
Sbjct: 197 EPLRK-GGTASGPVSFMRGADSWAGTIKSGGKTRRAAKMVVLDVDHPDVQEFIWCKAKEE 255

Query: 471 DDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           D      +      I  D F     QNA  ++   D      +  G++++          
Sbjct: 256 DKAEALRNAGFDMSIDGDGFTSIQYQNANNSVRVSDAFMQAVEK-GEDWD--------LI 306

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            R +    + + A  L R++    +    P + +    N      + G +++SN C+E  
Sbjct: 307 ARTDGSAVKTVDARELMREIAEAAWRCADPGVQYDTTINQWHTSPNSGRINASNPCSEYM 366

Query: 590 LNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 + + CNL S+NL+     +  FD       +       + V+  + +  E   K
Sbjct: 367 HV----DDSACNLASLNLMKFRRPDGTFDVANFEHAVDVVFLAQEIVVGASSYPTEGIAK 422

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           + +  R +GLG     + L    +PY S      A      ++  A   S E+A   G +
Sbjct: 423 NANAFRQLGLGYANLGAYLMSNGMPYDSDAGRGTAAAITALMTGRAYQRSAEIAGAVGTF 482

Query: 709 SSFKGSLWDQGV---FPID-SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
             +  +            D S  +     D+  +   SR  WD+  +  +  G RN+   
Sbjct: 483 ERYAENREPHNAVMRMHRDASYAIPNASCDDDGLLTASRRVWDDAVELGEKNGYRNAQAT 542

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI+ +    +  ++P +  +  K  + G    + +  V    Q   + +  +  
Sbjct: 543 VLAPTGTISFLMDCDTTGVEPDFSLVKFKELVGGGQMTIVNRTVPLALQTLGYSDEQVEQ 602

Query: 824 LKYH---DGSIGNIERIPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           ++ H     +I     +  +   +   A     I  M  I+     Q +I  A S  + L
Sbjct: 603 IESHINDASTIVGAPGLAAEHLPVFDVAVGERAISHMGHIKMMGAVQPFISGAISKTVNL 662

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  + + +   Y QAW +G+K     R  S T+ 
Sbjct: 663 PQTATVEDIADAYLQAWRLGVKALAIYRDGSKTAQ 697


>gi|313820320|gb|EFS58034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA1]
 gi|313822873|gb|EFS60587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA2]
 gi|314925207|gb|EFS89038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA3]
          Length = 950

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 134/651 (20%), Positives = 238/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V     + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAKPEVRIEYRPRRQRLPKS 728


>gi|289425582|ref|ZP_06427359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289427199|ref|ZP_06428915.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|295130586|ref|YP_003581249.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|289154560|gb|EFD03248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289159668|gb|EFD07856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|291375818|gb|ADD99672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|313772155|gb|EFS38121.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL074PA1]
 gi|313792149|gb|EFS40250.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA1]
 gi|313810019|gb|EFS47740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA1]
 gi|313818553|gb|EFS56267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA2]
 gi|313825195|gb|EFS62909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA1]
 gi|313830347|gb|EFS68061.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL007PA1]
 gi|313833721|gb|EFS71435.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL056PA1]
 gi|313838725|gb|EFS76439.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL086PA1]
 gi|314960010|gb|EFT04112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA2]
 gi|314962807|gb|EFT06907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA1]
 gi|314973352|gb|EFT17448.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA1]
 gi|314976029|gb|EFT20124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL045PA1]
 gi|314978432|gb|EFT22526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA2]
 gi|314983949|gb|EFT28041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA1]
 gi|314988133|gb|EFT32224.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA2]
 gi|314989937|gb|EFT34028.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA3]
 gi|315078024|gb|EFT50075.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA2]
 gi|315080649|gb|EFT52625.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL078PA1]
 gi|315084321|gb|EFT56297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA2]
 gi|315085663|gb|EFT57639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA3]
 gi|315088915|gb|EFT60891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA1]
 gi|315095897|gb|EFT67873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL038PA1]
 gi|327326179|gb|EGE67969.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA2]
 gi|327331946|gb|EGE73683.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA3]
 gi|327443147|gb|EGE89801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA2]
 gi|327445932|gb|EGE92586.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA2]
 gi|327448088|gb|EGE94742.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA1]
 gi|327453133|gb|EGE99787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL092PA1]
 gi|328753478|gb|EGF67094.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL020PA1]
 gi|328760860|gb|EGF74426.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL099PA1]
 gi|332675426|gb|AEE72242.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes 266]
          Length = 950

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 134/651 (20%), Positives = 238/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V     + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|313807511|gb|EFS45998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA2]
          Length = 950

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 134/651 (20%), Positives = 238/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V     + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|301052990|ref|YP_003791201.1| ribonucleoside-diphosphate reductase subunit alpha, N-terminal
           domain-containing protein [Bacillus anthracis CI]
 gi|300375159|gb|ADK04063.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 575

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 250/569 (43%), Gaps = 39/569 (6%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI     + E               CNLGS+N++    N +     +   +  
Sbjct: 371 KMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHA 425

Query: 628 AVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A   
Sbjct: 426 GMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTF 485

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDEL--AMN 739
              +++++I  S+E+A+E+   +  F  S +  G +           + E   +L   ++
Sbjct: 486 FMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTNYSPVTEKVQQLFEGIH 545

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             ++  W++LK++V   G+ N+     AP
Sbjct: 546 IPTKEDWNQLKRQVMEHGLYNA-LTCSAP 573


>gi|254362524|ref|ZP_04978627.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261494147|ref|ZP_05990650.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496012|ref|ZP_05992422.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094124|gb|EDN75023.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261308262|gb|EEY09555.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310313|gb|EEY11513.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 555

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 163/622 (26%), Positives = 263/622 (42%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ ++  +F  S+P   N
Sbjct: 22  LQRGYLLEGT-----TALDRIRFIAEH-AERKLGIEGYADKFYHYMARGYFSLSSPIWSN 75

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 76  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSLIKN-NGK 134

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 135 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 190

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 191 YGVCVGHDWLESMKAGDPYK---------------------------------------- 210

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      +H+SNLCTEI L SS+EE+
Sbjct: 211 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEES 268

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NLL       FD  K      T    LD V+        +   +++A +   
Sbjct: 269 FVCCLSSMNLL------YFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFAR 322

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S +A++  +E  + +    + AS ELAQ  G     
Sbjct: 323 RHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEIL 382

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +G                                           G RN+  M+IAPT +
Sbjct: 383 EG------------------------------------------YGRRNTTLMSIAPTKS 400

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E + + +  +DGS
Sbjct: 401 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEIWTSILQNDGS 460

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ +  K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 461 VQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIHPATPARDLNQLY 520

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 521 LTAEELGLKSIYYQNSMSAAQV 542


>gi|314955749|gb|EFT00149.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA1]
          Length = 950

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 136/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ LS+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQLSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|313801898|gb|EFS43132.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA2]
          Length = 950

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 137/636 (21%), Positives = 245/636 (38%), Gaps = 35/636 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF++ +    D  R   D   A +  DL  + +     QNA  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRD---AGFDMDLGGRDIVSVQYQNANNS 284

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   D        +GK F +        +     KV   + A  L+ K+    +E   P 
Sbjct: 285 VRVSDAFMAAVG-HGKPFGL-------MSRTEPDKVLDTVDAKELFGKIAQAAWECADPG 336

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
           + + D  N      + G +++SN C+E     +S     CNL S+NLL     N+ FD +
Sbjct: 337 LQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASLNLLKFLDENDHFDVE 392

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K    +   +  +D  I       E   K+    R +G+G     + L  L + Y S   
Sbjct: 393 KFTRAVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGG 452

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----E 735
             +A      ++  +   S ELA   G Y  +  +                +V      +
Sbjct: 453 RALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNND 512

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
            A+   ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  +  K  
Sbjct: 513 TAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKM 572

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE- 850
           + G    + +  V    +   +       +  +   +GS+     + +   ++   A   
Sbjct: 573 VGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGT 632

Query: 851 --IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + L E S  + +  +Y + W +GLK     R   
Sbjct: 633 RFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNC 692

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                 S  K  + +  A P            +P S
Sbjct: 693 KVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|257464835|ref|ZP_05629206.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
 gi|257450495|gb|EEV24538.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
          Length = 554

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 167/622 (26%), Positives = 257/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A  +   E  A +FY+ ++  +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALDRIRYIAEH-AEHKLGIEGFAEKFYHYMARGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSKIGGGTSGYFGDIRPRGSAIKN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGREWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L SSS+E+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSSSDES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA------KKSNH 651
            VC L S+NLL       FD  K           LD V+       ++        K   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSKEIPFLHRATKFAI 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +IP+ S EA++  +   + +    + AS ELAQ  G     
Sbjct: 322 RHRALGLGVLGWHSYLQANNIPFDSFEAMQKNNLIFKTLQEKTLKASQELAQRFGEPELL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   LK++ L  E +   + ++DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLKEKGLDKEEIWESILHNDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ +  K +  T  EI  + +I+ A++RQK+IDQ QS+NL +   +  + L+ +Y
Sbjct: 460 VQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQSINLMIHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQNSMSAAQV 541


>gi|50842509|ref|YP_055736.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes KPA171202]
 gi|50840111|gb|AAT82778.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|313764463|gb|EFS35827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA1]
 gi|313812950|gb|EFS50664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA1]
 gi|313816001|gb|EFS53715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA1]
 gi|313827770|gb|EFS65484.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA2]
 gi|314915455|gb|EFS79286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA4]
 gi|314918261|gb|EFS82092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA1]
 gi|314920074|gb|EFS83905.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA3]
 gi|314931597|gb|EFS95428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL067PA1]
 gi|314958164|gb|EFT02267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA1]
 gi|314967825|gb|EFT11924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA1]
 gi|315098528|gb|EFT70504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA2]
 gi|315101114|gb|EFT73090.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA1]
 gi|315105661|gb|EFT77637.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA1]
 gi|327450790|gb|EGE97444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA3]
 gi|327453865|gb|EGF00520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA2]
 gi|328754209|gb|EGF67825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA1]
 gi|328754540|gb|EGF68156.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA2]
          Length = 950

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|315108335|gb|EFT80311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA2]
          Length = 950

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 239/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-------------------NTANWI 485
           + A    L+  H D+EEF++ +    D  R   D                    N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E   + D                           + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTEPDKVLD--------------------------TVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E     +S     CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYMSLDNSS----CNLASL 377

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                 +V      + A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K  + G    + +  V    +   +       +  +   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIVAYIADNGSVVGAPD 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E S  + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S  K  + +  A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|301331891|gb|ADK70921.1| U28 [Elephant endotheliotropic herpesvirus 2]
          Length = 799

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 156/748 (20%), Positives = 295/748 (39%), Gaps = 83/748 (11%)

Query: 252 YPEYFCRYIEEGVKARLL-HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           Y E++   +   V+  L      ++   V    D  + +     ++      + YF   +
Sbjct: 83  YAEHYGPLLSTDVRLALTNLHKHIEARFVRTNTD-AFLKLEGRGFMSAMKFINIYFREYD 141

Query: 311 GSRIEMPQAFFMRV----AMGL--------ALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           G RIE    FF R+    +M +          K+ +      + +  L +      +P +
Sbjct: 142 G-RIENLLHFFCRITAFFSMSIVRNPAYYGFFKKPDFLSIFGDIFQQLVTQTVGLCSPVM 200

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA--MLAKYSGGLGNDWTPVRGLGAHIHG 416
            N+G     L+SCF+     +       +  +    +    GG+G D +           
Sbjct: 201 LNAGISTSNLTSCFIIVRDLECNADVNDVHTSILRQILDCGGGIGLDVSHF--------- 251

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             G    +  + K+ N T    N+  +R   +   ++ W+ ++ + L ++     +    
Sbjct: 252 --GSGLDISKYFKMLNSTVDFYNEYLRRPVGLSVSMDIWNKNIHKLLRMKMPNASEEESC 309

Query: 477 HDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
             +  A  IPDLF KR  ++    W+LFS +    L   YGK+FE AY  YE+       
Sbjct: 310 PSLFNAVMIPDLFFKRYEEDPGGKWSLFSGNMAKVLSSTYGKKFEAAYVKYEQLGLYD-- 367

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH----VGVVHSSNLCTEITL 590
               +I    +   +L  +  TG P+I FKD  N     +       ++ ++NLC EI  
Sbjct: 368 ---TQIPIKEILFLLLNAIVNTGTPYILFKDAMNRHYYMEDNTSSSYIIRATNLCAEIVH 424

Query: 591 NSSSEETAVCNLGSINLLAHFA----------------------NNQFDYDKLASTIRTA 628
           +++  E  VCN+ S+NL                              F    L  T++  
Sbjct: 425 HANDSEVGVCNICSVNLTNFVKCYVPVDNQSLQEGIDFVVNEDHTKMFSLKDLRETVQKV 484

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V +++  I  +      A+ S   +R++G+G+ G  S    + + + S  A ++     E
Sbjct: 485 VIMVNCSIAESGSIPMGARLSAGRYRSMGVGVQGLHSTFLKMKLGFTSAAARDLNRRIFE 544

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            + + A++ S+ L +     + +F  S + +G    D         +++ +   S   W 
Sbjct: 545 SMYYSAVNTSMTLCKNGLEPFYNFHRSKYSRGWLHYDGW-------EDVKLTLPSDW-WS 596

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+  +   G+ N+  +A+ PT+  +   GVS++  P++ N + K     +  V N  L 
Sbjct: 597 KLRAGIGKYGLYNAQFIALMPTSGTSQTSGVSEAFYPNFSNFHSKVTTGVEVLVANKDLQ 656

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E      +   +  ++     +          ++  +  AFE +   LI+  + R  ++
Sbjct: 657 KEFSMYSSYLSNIDWEVSKACETYFTEPEWEKLMR--YKNAFEYEQEALIDMCADRAPFV 714

Query: 868 DQAQSLNLYLDEPSG---KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           D +QS++L++ E      + +  + R A   GLKT  YYLR R    +     K V G  
Sbjct: 715 DHSQSMSLFVREEDITGCRYIYSLLRHAHKKGLKTGMYYLRIRKQARLRDLEKKDVFG-- 772

Query: 924 NAVPVTDPNSSTHSLGIPSSCTS-DTEC 950
             VPV   +S + S+    SCT  D  C
Sbjct: 773 --VPVC--SSGSRSVAKKDSCTEADNTC 796


>gi|294631833|ref|ZP_06710393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
 gi|292835166|gb|EFF93515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
          Length = 962

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 136/626 (21%), Positives = 242/626 (38%), Gaps = 35/626 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 122 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 181

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 182 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 240

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H DVE+F++ +    +  R   D      +  D       QNA  ++   DE   
Sbjct: 241 ILDVDHPDVEDFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMK 300

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +  GK    A         R   +V  ++ A +L+RKM    +    P I + D  N 
Sbjct: 301 AVEQGGKFGLRA---------RMTGEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINH 351

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G ++ SN C+E     ++     CNL S+NL+    ++      F+ ++ A  
Sbjct: 352 WHTCPESGRINGSNPCSEYMHLDNTS----CNLASLNLMKFLKDDGKGHQSFEVERFAKV 407

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 408 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 467

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSL-WDQGVFPIDSIGLLAEVR---DELAMNR 740
                ++  A   S ELA   G Y  +  +    Q V    +    A VR    +  +  
Sbjct: 468 AITSLMTGTAYKRSAELAAVVGPYDGYARNAQPHQRVMKQHADANAAAVRMDDLDTPVWA 527

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +  +  G RNS    +APT TI       +  ++P    +  K  + G  
Sbjct: 528 AATEAWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGS 587

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H    GN+   P    +  ++   A     I P
Sbjct: 588 MQIVNGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKQEHYEVFDCAMGERAISP 647

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + +    + ++++ IY +AW +G+K     R        
Sbjct: 648 MGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQP 707

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSL 938
            S  K  D +     V +P +    +
Sbjct: 708 LSA-KTKDSEKKTEAVEEPQAKVEKV 732


>gi|116620784|ref|YP_822940.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223946|gb|ABJ82655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 944

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 252/661 (38%), Gaps = 67/661 (10%)

Query: 316 MPQAFFMRVAMGL---------ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN------ 360
             Q    RV   +            E + E   +E  +L+ +     ++P  FN      
Sbjct: 101 SVQQLVQRVVDTITDWGKKDGYFKTEQDGENFRMELAHLMLTQKACFNSPVWFNVGVKET 160

Query: 361 ------------------SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
                             +G   PQ S+CF+ +V D L  I    +   ML K+  G G+
Sbjct: 161 RGYGWNYDERVGKVTKLETGVMRPQCSACFIVSVKDSLESILDLAKTEGMLFKWGSGTGS 220

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEE 461
           + + +R   A +    G++ G + F+K  +  A  +  GGK R+ A    L   H DV++
Sbjct: 221 NLSALREEDA-VLSGGGRASGPLSFMKGFDAFAGVIKSGGKTRRAAKMVILNVDHPDVDK 279

Query: 462 FLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           F+  +           +    ++   + +     QNA  ++ + DE  D           
Sbjct: 280 FIWCKAKEEKKAYTLVEAGYDSSLDGEAYSSIFFQNANNSVRASDEFMDAA-------MR 332

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             + + +    G+    ++  A  L R++     + G P + F    N   P ++   ++
Sbjct: 333 DDDWWTKGVFTGQP--VKRYKAKDLMRQIAEATHQCGDPGMQFDTTVNRWHPCKNTARIN 390

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           +SN C+E        + + CNL S+NL+ +   + QFD +     + T +   + ++D  
Sbjct: 391 ASNPCSEYMFL----DDSACNLSSLNLMKYVGPDGQFDVEAFRHAVDTMILAQEIIVDNA 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +  EK  +++H  R +GLG     + L  + +PY S    + A      +   A   S 
Sbjct: 447 SYPTEKIGQNSHDFRPLGLGFANLGALLMSMGVPYDSDHGRDFAGAITAVMCGQAYLTSS 506

Query: 700 ELAQERGAYSSFKGS--LWDQGV-FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            +A+  G +  +  +   + + +    DS+  +       A+   ++  WD   +  +  
Sbjct: 507 RVAEAVGPFEGYAANEDPFLEVIRMHRDSVKRINGNHLPTALMSGAQECWDYAYESGRRS 566

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G RN+    IAPT TI  +    +  I+P    +  K  + G    + +  V     +  
Sbjct: 567 GYRNAQVTVIAPTGTIGFMMDCDTTGIEPDLALIKYKKLVGGGVIKIVNNTVPAALVKLG 626

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMWLIESASRRQ 864
           +       +  H  S G IE  PD LK  H   F+           I  M  +   +  Q
Sbjct: 627 YTPEQAEKIVTHIDSTGTIEGAPD-LKPEHLAVFDCSFRPQNGSRSIHYMGHVRMMAAVQ 685

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +I  A S  + +  E + +++   Y ++W +GLK     R  S      S+  G   K 
Sbjct: 686 PFISGAISKTINMPEECTVEEIMSAYTESWKLGLKAVAIYRDNSKRVQPLSSGSGKGEKK 745

Query: 924 N 924
           N
Sbjct: 746 N 746


>gi|323446056|gb|EGB02379.1| hypothetical protein AURANDRAFT_13764 [Aureococcus anophagefferens]
          Length = 343

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 153/350 (43%), Positives = 211/350 (60%), Gaps = 14/350 (4%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G+  E PQ   MRVA+G+     +    A+E Y ++S   F  +TPTLFN+GT  PQLS
Sbjct: 2   DGAIAERPQHMIMRVALGIHG---DDLAGALETYEMMSQKMFTHATPTLFNAGTPRPQLS 58

Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL  +  D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L
Sbjct: 59  SCFLLAMKEDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPML 118

Query: 429 KVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +V NDTA  V+QGG +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPD
Sbjct: 119 RVYNDTARYVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPD 178

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  N  W+L  P+E   L D +G EFE  YE YE +         + I A  LW 
Sbjct: 179 LFMKRVEANGFWSLMCPNECPGLADCHGAEFEALYERYEAEGRAR-----KAIPAQQLWF 233

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +L    ETG P++ +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL
Sbjct: 234 AILDSQVETGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINL 293

Query: 608 LAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            AH         FD+ KL  T     + L+ V+D+N + +E+AK SN  H
Sbjct: 294 TAHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKH 343


>gi|111225058|ref|YP_715852.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111152590|emb|CAJ64331.1| Ribonucleoside-diphosphate reductase M1 chain (Vitamin
           B12-dependent ribonucleotide reductase) [Frankia alni
           ACN14a]
          Length = 1012

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 125/613 (20%), Positives = 227/613 (37%), Gaps = 36/613 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + E    E   +L    F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 111 GYFATDADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILSVDDTMESILN 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYREEGLIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV----TQNAGWT 500
           + A    L+  H D+ EF++ +    D  R   D   A +  DL  + +     QNA  +
Sbjct: 230 RAAKMVVLDVDHPDIVEFVETKAREEDKIRALRD---AGFDMDLGGRDIASVQYQNANNS 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE      + G  F++          R + +    I A  L+R +    +    P 
Sbjct: 287 VRVTDEFMRAV-VDGSSFDLR--------ARLDGRTIETIDAKGLFRTIAEAAWACADPG 337

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           I +    N        G + +SN C+E     +S     CNL S+NLL     +  FD +
Sbjct: 338 IQYDGTINDWHTCPESGRISASNPCSEYVHLDNSS----CNLASLNLLTFLRPDRTFDAE 393

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              + +   +  +D  I        +       +R +G+G     + L      Y S   
Sbjct: 394 GFVAAVELIITAMDISICFADFPTPEITAVTRAYRQLGIGYANLGALLMASARAYDSDGG 453

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      ++  A   S ELA   GAY  F  +                 VR    ++
Sbjct: 454 RALAASITSLMTATAYRRSAELAGIVGAYDGFARNADAHRRVVRKHSAANDAVRSVHTED 513

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
             +   +   W   +      G RN+    +APT TI       +  I+P    + +K  
Sbjct: 514 TRVLAAASKEWARAQTLGDKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKL 573

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF-- 849
           + G    + +  V    +   + E  +  +       G++   P    +   +   A   
Sbjct: 574 VGGASMRIVNQTVPAALRALGYPEETLEAIVEFIAEHGHVVDAPGLRPEHYDVFDCAIGE 633

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + +    + ++++ IY + W +GLK     R   
Sbjct: 634 RAISPMGHVRMMAAVQPFLSGAISKTVNMPSTATVEEVEEIYLEGWRLGLKALAIYRDNC 693

Query: 908 ATSVEKSTLKGVD 920
                 S ++G  
Sbjct: 694 KVGQPLSDVRGAK 706


>gi|329939982|ref|ZP_08289264.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
 gi|329300808|gb|EGG44704.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
          Length = 969

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 128/636 (20%), Positives = 237/636 (37%), Gaps = 34/636 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 122 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 181

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 182 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 240

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H DVE F+  +    +  R   D      +  D       QNA  ++   D    
Sbjct: 241 ILDVDHPDVENFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMK 300

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +  GK              R   +V  +I A +L+RKM    +    P I + D  N 
Sbjct: 301 AVETGGKFG---------LTSRMTGEVIEEIDAKSLFRKMAEAAWACADPGIQYDDTINH 351

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G ++ SN C+E     ++     CNL S+NL+    ++      F+ ++    
Sbjct: 352 WHTCPESGRINGSNPCSEYMHLDNTS----CNLASLNLMKFLKDDGQGHQSFETERFQKL 407

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 408 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 467

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNR 740
                ++  A   S ELA   G Y  +  +     + +        +A   D+L   +  
Sbjct: 468 AITSLMTGTAYRRSAELASVVGPYDGYARNAQPHQRVMKQHADANAVAPRMDDLDTPVWA 527

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++++  +  G RNS    +APT TI       +  ++P    +  K  + G  
Sbjct: 528 AATEAWQDVQRLGEKHGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGS 587

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H   +G++ +   +  +  ++   A     I P
Sbjct: 588 MQIVNGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKAEHYEVFDCAMGERAISP 647

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + +    + ++++ IY +AW +G+K     R        
Sbjct: 648 MGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQP 707

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            S             +T+    T    +        
Sbjct: 708 LSAKTKDTKAAEKDAITEKAEETIRTAVEKVVEYRP 743


>gi|262198687|ref|YP_003269896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
 gi|262082034|gb|ACY18003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
          Length = 963

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 140/696 (20%), Positives = 251/696 (36%), Gaps = 83/696 (11%)

Query: 297 GLQILYDRYFLHING--SRIEMPQAFFMRVAMGLA---------LKETEKEKRAVEFYNL 345
              ++  +YF    G   R    +    RVA  +            + +  +   E  +L
Sbjct: 83  ATNVVVQKYFRGTVGTPERERSVKQMIGRVADTIFGWGRKDGYFRSDKDAWRFRDELVHL 142

Query: 346 LSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L +     ++P  FN G    PQ S+CF+ +V D +  I    +   ML KY  G G++ 
Sbjct: 143 LVNQKMAFNSPVWFNVGVETEPQCSACFINSVDDSMSSILTLARTEGMLFKYGSGTGSNL 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFL 463
           + +R   A      G + G + F++  +  A A+  GGK R+ A    L+  H D+ +F+
Sbjct: 203 SSLRSS-AENLHGGGTASGPVSFMRGFDAFAGAIKSGGKTRRAAKMVILDAEHPDIVDFV 261

Query: 464 DLRKNTGDDRRRT---------------------HDMNTANWIPDLFMKRVTQNAGWTLF 502
           + +                                + N +  + D FM+ V  ++ WT  
Sbjct: 262 ECKAKEEQKAWALIDAGYDGGFNEPGGAYDSVNYQNANHSVRVSDSFMQAVVDDSSWTTH 321

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +  +  D+H                            + A  L RK+       G P + 
Sbjct: 322 AVLDGRDIH---------------------------TMPARELMRKIADAAHLCGDPGMQ 354

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621
           F    N  +P      +++SN C+E        + + CNL S+NL      +  FD +  
Sbjct: 355 FDSTINDWNPCIGTARINASNPCSEYMFL----DDSACNLASLNLRRFQSEDGNFDVEAY 410

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I      ++ ++D   +   K  +++H  R +GLG     + L    +PY S     
Sbjct: 411 KHAIEITTLAMEIIVDNASYPTPKIGENSHRFRPLGLGYANLGALLMSRGLPYDSEPGRA 470

Query: 682 IADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL---A 737
            A      +   A   S  +A +  G ++ +  +              +A++   L    
Sbjct: 471 YAAALTAILCGQAYRTSARIAADATGPFAGYDENREPFLRVMNKHRKAVADIDAALVPYD 530

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMS 796
           +   +R  W+++ +  +  G RN+    +APT TIA +    +  ++P    +  K  + 
Sbjct: 531 LMEAARGAWNDVVELGEKHGFRNAQTTVLAPTGTIAFLMDCDTTGVEPDIALVKYKRLVG 590

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---- 849
           G    + +  V E  +R  + E  +  +  H     SI     + ++   +   AF    
Sbjct: 591 GGMLKMVNQTVPEALRRLGYSEQQLEGIINHIDTQESIEGTSVLKEEHLPVFDCAFRSPS 650

Query: 850 ---EIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRS 905
               I  M  I   S  Q ++  A S  + L    +   ++  Y QAW +GLK     R 
Sbjct: 651 GTRSIHYMGHIRMMSAVQPFLSGAISKTVNLPSDCTVGDIEDAYLQAWKLGLKAIAVYRD 710

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
               +   ST K       A+  T   S    L  P
Sbjct: 711 GCKRTQPLSTSKQQATSNGAIAKTLSESDVLELLAP 746


>gi|282851732|ref|ZP_06261096.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
 gi|282557135|gb|EFB62733.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
          Length = 505

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 133/525 (25%), Positives = 230/525 (43%), Gaps = 57/525 (10%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
              S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R  
Sbjct: 2   KNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIK 61

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IPD+  +   +N    LFSP ++   +     +  I  E   +          
Sbjct: 62  SLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEY--QNILNNPCIKK 119

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++    
Sbjct: 120 TFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTY 179

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIE 644
                         CNLGS+N+ A   +     DKL   +  +V+ L+ V   +      
Sbjct: 180 NKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCAP 235

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +K N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +LA+ 
Sbjct: 236 SIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAET 295

Query: 705 RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            GA+  FK S +  G +    I          + E+  +  +   ++  W+EL  ++K  
Sbjct: 296 YGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKT 355

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ +N+       
Sbjct: 356 GIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK------- 408

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                 D+ +     A+E+ P  +I+  +  QK++DQ+ SL L+
Sbjct: 409 ----------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLF 446

Query: 877 -LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 447 VEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 491


>gi|302557997|ref|ZP_07310339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
 gi|302475615|gb|EFL38708.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
          Length = 964

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/636 (19%), Positives = 239/636 (37%), Gaps = 37/636 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E+F++ +    +  R   D      +  D       QNA  ++   DE   
Sbjct: 240 VLDVDHPDIEDFIETKVKEEEKIRVLRDAGFDMDLGGDDIASVQYQNANNSVRVNDEFMQ 299

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +  GK    A         R   +V  ++ A AL+R++    +    P I +    N 
Sbjct: 300 AVEQGGKFGLRA---------RMTGEVIEEVDAKALFRRLAEAAWACADPGIQYDGVINN 350

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G + +SN C+E     ++     CNL S+NL+    ++      F+ ++    
Sbjct: 351 WHTCPESGRITASNPCSEYMHLDNTS----CNLASLNLMKFLKDDGLGNQSFETERFQKV 406

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     +A 
Sbjct: 407 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAG 466

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNR 740
                ++  A   S ELA   G Y  +  +            D+ G    + D +  +  
Sbjct: 467 AITSLMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMRQHADANGTAVRMDDLDTPVWA 526

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +  +  G RN+    +APT TI       +  ++P    +  K  + G  
Sbjct: 527 AATEAWQDVVRVGEKNGFRNAQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGS 586

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H   +G++ +   +  +  ++   A     I P
Sbjct: 587 MQIVNGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKQEHYEVFDCAMGERAISP 646

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + +    + ++++ IY +AW +G+K     R        
Sbjct: 647 MGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQP 706

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            S       K     VT+    T    +        
Sbjct: 707 LSAKTKEKEKAE---VTEKAEETIRAAVEKVVEYRP 739


>gi|240950329|ref|ZP_04754599.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
 gi|240295140|gb|EER45959.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
          Length = 554

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 168/622 (27%), Positives = 258/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A  +   E  A +FY+ ++  +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALDRIRYIAEH-AEHKLGIEGFADKFYHYMARGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSKIGGGTSGYFGDIRPRGSAIKN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGREWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L S+SEE+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSNSEES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+        +   + +A K   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSKDIPFLHRATKFAI 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +IP+ S EA++  +   + +    + AS ELAQ  G     
Sbjct: 322 RHRALGLGVLGWHSYLQSNNIPFDSFEAMQKNNLIFKTLQEKTLKASQELAQRFGEPELL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   LK++ L  E +   + + DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLKEKGLDKEEIWESILHTDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ +  K +  T  EI  + +I+ A++RQK+IDQ QS+NL +   +  + L+ +Y
Sbjct: 460 VQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQSINLMIHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQNSMSAAQV 541


>gi|189490616|ref|YP_001957186.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
 gi|164609681|gb|ABY63290.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
          Length = 764

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 180/808 (22%), Positives = 311/808 (38%), Gaps = 83/808 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            I+  DGT   FN+ +     E     L+D V    ++ ET + + + +S    + ALI 
Sbjct: 4   NIIKLDGTQEPFNAAKANRWCEWGTENLKDKVDWSSIVMETIQTLPETVSSQAFQMALIE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
              TL  +  ++     R     + + +  T      KA H  MQ           ++G+
Sbjct: 64  --NTLSHRTWSHYLFAGRLYAVWIHKHLYGTDGIPTVKALHTRMQ-----------KDGL 110

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFM 322
             +L + +    D + +   +K++ DF   +  L  +  +Y L   + G+  E PQ  ++
Sbjct: 111 MVKLKYNTQ---DYLKIEKFIKHDLDFEQPHFALHQIRKKYALGNRVTGAEYESPQFTYI 167

Query: 323 RVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           R+AM LA  E +  +     +FY L +       TP   N GT H   +SC L  V D+ 
Sbjct: 168 RMAMALAENEPKATRLQVVRDFYELFAYKKLSAPTPNYINLGTSHRGFASCCLFAVGDNG 227

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +         + + S G+G +    R +G  + G      G   +      + VA  Q
Sbjct: 228 TSLALGNYIGDKMTQMSAGIGVNIMT-RAVGDAVRGGLFAHHGKKKYYDAMGKSIVANVQ 286

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R GAV  + E++  +VE    LR       RR  DM+ A      F K+   N    
Sbjct: 287 AG-RGGAVTCFFESFDQEVEMIQGLRNPLSTPDRRNRDMHFAMLTNRFFAKKAASNEQIF 345

Query: 501 LFSPDEVSDLHDL-YGKEFE---IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            F+P    DLH+  YGK+ E     YE YE+     +      +SA  + R+ L    ET
Sbjct: 346 AFNPYTAPDLHEAFYGKDIEEFIRLYEKYEKDESFTKHW----MSARDILRRSLKEAQET 401

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----------EETAVCNLGSIN 606
           G  ++   D  N       +  +HSSNLC EI   +S           E+     + + +
Sbjct: 402 GVAYVGQIDEMNRH--TPFLDPIHSSNLCMEIAEPTSPYYEMEDLVSREDHGRGEIATCS 459

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A    N  +  +       A++++D  I  + + I   + +     + G+G+MG  + 
Sbjct: 460 LAAVSVENIENDKEYEKVCYYALKMIDYCILNSTYVIPHLEFTAKQRMSAGVGMMGLATH 519

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y S           E   +  I AS+ +++ERG       + W  G  PID+ 
Sbjct: 520 LAKNGLDYTSNAGKREIHWIAERHMYFMIKASIAISKERGLAPWIHKTKWPAGWLPIDTY 579

Query: 727 GL-LAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSIDP 784
              +  + D    +      W++L+  V   G + +S  +A  P  + +   G + SI P
Sbjct: 580 QRAVDNIIDPKGSSFDYTYNWEKLRAEVVANGGIAHSVLIAYMPGESSSKALGGANSIYP 639

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             +    K++ +        +                                 DD    
Sbjct: 640 VRRLTLSKNDQNNHLYWAAPYG--------------------------------DDPSVK 667

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKT 899
           +  A++I    LI+  +  QK+ DQ  S + Y      +++D       Y     MG+KT
Sbjct: 668 YQFAWDIPTKDLIDCYAIFQKFTDQGISADFYRRIVGTEEIDSNELLKDYFYMVKMGMKT 727

Query: 900 TYYLRSRSATSVEKSTLK-GVDGKLNAV 926
            YY  + +  ++    ++  +D   NA 
Sbjct: 728 RYYFNTETTANLSLEAMESAIDNSGNAA 755


>gi|332800125|ref|YP_004461624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
 gi|332697860|gb|AEE92317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
          Length = 1225

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 133/501 (26%), Positives = 220/501 (43%), Gaps = 79/501 (15%)

Query: 440  QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
                R+GA    L   H D+ +F+  +KN  +      + N +  I D FM+ + ++  +
Sbjct: 617  SHNTRRGANMGILRVDHPDILDFIQCKKNDKE----ITNFNISVAITDKFMEALKEDGNY 672

Query: 500  TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
             L  P                                  K+ A  ++  ++ M +  G P
Sbjct: 673  DLIDPHTKK---------------------------PTGKLRAREVFDLIVDMAWNNGEP 705

Query: 560  WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQ 615
             I F D  N  +P   +G + S+N C E  L         CNLGSINL          N 
Sbjct: 706  GIVFIDRMNEDNPTPEIGDIESTNPCGEQPLLPYES----CNLGSINLAKFIKKSGNKNT 761

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             DY+ L  T+  AVR LD+VID+N + +++ ++    +R IGLG+MGF   L  L IPY 
Sbjct: 762  IDYESLKETVHLAVRFLDDVIDVNLYPLKEIEEMTKANRKIGLGVMGFADMLIELGIPYN 821

Query: 676  SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            S EAV+ A+  M FI   + +AS ELA+ERG + +++ S++                   
Sbjct: 822  SDEAVKTAEAIMSFIDSESKNASCELAKERGVFPNWEKSIY------------------- 862

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                          K++     +RN+    IAPT TI+ I GVS  I+P +   + +  M
Sbjct: 863  --------------KEKGMR--IRNATTTTIAPTGTISIIAGVSSGIEPIFALAFERHVM 906

Query: 796  -SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             +     V+      LK++ L+ E ++  +    G++  I+ +P ++K++  TA +I P 
Sbjct: 907  DNQRLVEVHPIFKQVLKEQGLYSEELMQKVVT-QGTLQGIDELPKEIKRVFVTAHDIKPE 965

Query: 855  WLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSV 911
            W I+  +  QK+ D A S  + + +  + + +  +Y  A+ +G K  T Y   SR    +
Sbjct: 966  WHIKMQAAFQKYTDNAVSKTVNFPNSATREDVKTVYMMAYNLGCKGVTIYRDGSRQEQVL 1025

Query: 912  EKSTLKGVDGKLNAVPVTDPN 932
             K T K    +    P   P+
Sbjct: 1026 NKGTKKERPARYKIKPRPRPS 1046



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 6/157 (3%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-----EKRAVEFY 343
                     +L  RY    + G  IE P+    RV+  +A  E +      +  A +FY
Sbjct: 5   KINLTENARVVLEKRYLAKDSSGKVIETPETLIERVSNAIAKAELKYVQDKSDDWAKKFY 64

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++S   F+ ++PTL N+G    QLS+CF+  V D + GIF +++ +A++ K  GG G  
Sbjct: 65  DMISELKFLPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFDSIKSSALIHKSGGGTGFS 124

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           ++ +R  GA +  T G + G I F+KV N    AV Q
Sbjct: 125 FSRLRPKGAMVKSTGGVASGPISFMKVFNAATEAVKQ 161


>gi|262341078|ref|YP_003283933.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272415|gb|ACY40323.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 570

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 170/623 (27%), Positives = 261/623 (41%), Gaps = 106/623 (17%)

Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           Y   I G  +   E P   + R+A   A    +K K   +F+N+      + STP + N 
Sbjct: 27  YLTTIKGGYLLDGETPFEAYKRLAKNAAKI-LKKPKIEEKFFNIFWKGWLIPSTPVMVNL 85

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN-GK 420
           GT      SCF   + D +Y I+    E A+L+K+ GG   D++ VR +G+ I     G 
Sbjct: 86  GTEKGLPISCFSGRIGDSMYEIYRKNLEMAILSKHGGGTSYDFSLVRPIGSPIKNGTLGS 145

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIPF+K  +   VA  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H+++
Sbjct: 146 SDGVIPFIKSYDSAIVASKQGRTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               I D FM+ V +  G                                          
Sbjct: 206 QGVIISDSFMEEVLKKNG------------------------------------------ 223

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSSEET 597
              + W   L    +TG P++ FKD  N     + +++   +H SNLC+EI L +    T
Sbjct: 224 KERSFWINTLKERVKTGEPYLFFKDNANKNLPENWEKNGLKIHHSNLCSEIMLPTDENHT 283

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NL  +         K  +T+  A+  LD V+        N   IE A +   
Sbjct: 284 LVCCLSSLNLYKYVE------WKNTNTVFYAILFLDAVLQEFIDKGKNIQGIEDAVRFAE 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +G+ S L    IP+ S ++  +       I   +  A+  LA+E      +
Sbjct: 338 KSRALGLGALGWHSYLQSNMIPFISVQSEILTHNIFRKIQLESQKATKYLAKE------Y 391

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S W+ G                                     G RN   MA+AP  +
Sbjct: 392 GESEWNIGT------------------------------------GRRNLTLMAMAPNRS 415

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            A + G  SQ ++P   N+YV  +  G     N +L   L +       +   +    GS
Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKMLIEIGYNLPEVWEQIANEKGS 475

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
              +  + ++ K +     EI+ + LI  AS RQK+IDQ QS+NL   + +  K ++ ++
Sbjct: 476 CLGLTALSEEQKNVFRCFKEINQLELIRQASIRQKYIDQGQSINLSFHQNTPAKYINKVH 535

Query: 890 RQAWLMGLKTTYYLRSRSATSVE 912
            +AW +GLK+ YY RS S    +
Sbjct: 536 LEAWKIGLKSLYYYRSESILRAD 558


>gi|703072|gb|AAA80556.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 820

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 167/693 (24%), Positives = 282/693 (40%), Gaps = 81/693 (11%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQ--ILYDRYFLHINGSRIEMPQAFFMRV------ 324
            ++ D++    ++        + LGLQ  + Y+ Y + + G + E    FF+R+      
Sbjct: 153 HIEMDMLRFYGNIYP----QLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAAT 208

Query: 325 -AMG----LALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            A+     +A               F+  L+   F+ STP +   G      +SC+L  +
Sbjct: 209 EALHRKPLIASLTNGSANWRTAFTSFFLALAHQLFVPSTPCMLFLGREGYSTASCYL--M 266

Query: 377 PDDLYGIFGALQ----ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                     ++    +        GG+G     V            +  G++  LK+ +
Sbjct: 267 DPRTTTTQDTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLID 315

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMK 491
              VA N    R   VC YLE WH D+   L +R     ++ RR  ++  A W  DL  K
Sbjct: 316 SLIVATNVNESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFK 375

Query: 492 RV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           R        +N  WTLF     S L  LYG +FE+ YE  E++          +I    +
Sbjct: 376 RYLRYVNGEKNVMWTLFDSR-ASILSKLYGDKFEVEYERLEKEGIG-----VAQIPIRDM 429

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGS 604
              ++     TG P+I FKD CN        G  +  SNLCTEI   ++     VC L S
Sbjct: 430 MFAIIKSAASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLAS 489

Query: 605 INLLAHFANNQFDYDK----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           INL         + +     L    R A    + ++D +     K++     +R+IG+G+
Sbjct: 490 INLARCVRRVNVNVNSILMPLGMPFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGV 549

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
            GF +A+  L +         +  +  E +   A++ S E  +     +  F  S + QG
Sbjct: 550 QGFHTAMLSLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQG 609

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               D            ++  T+   W  L+ R+ + G+ N+  +A+ PTA  A +  VS
Sbjct: 610 RLHFDGWD---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVS 660

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK--------QRDLWDEAMISDLKYHDGSI 831
           +   P + N++ K   +G+    NS L+ +++        +R     A+ S       ++
Sbjct: 661 EGFAPLFSNMFSKVTSAGELLRPNSQLMRDVRQIYPDNEQRRLSAITALESTAWCVKEAL 720

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----D 886
           G+       LK  + TAFE D   LI+  + R  ++DQ+QS+ L++ E +   L      
Sbjct: 721 GDRPECTRLLK--YKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVM 778

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
            +   A+  GLKT  YY + R AT+    +  G
Sbjct: 779 NLLLHAYKAGLKTGMYYCKIRKATNTGIFSGDG 811


>gi|328464292|gb|EGF35722.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus MTCC 5463]
          Length = 505

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 136/525 (25%), Positives = 233/525 (44%), Gaps = 57/525 (10%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
              S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R  
Sbjct: 2   KNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIK 61

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            ++    IPD+  +   +N    LFSP ++   +     +  I  E      +    K F
Sbjct: 62  SLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQNLLNNPRIKKTF 121

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-- 595
             ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++    
Sbjct: 122 --ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTY 179

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIE 644
                         CNLGS+N+ A   +     DKL   +  +V+ L+ V   +      
Sbjct: 180 NEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCAP 235

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             KK N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +LA++
Sbjct: 236 SIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEK 295

Query: 705 RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            GA+  FK S +  G +    I          + E+  +  +   ++  W+EL  ++K  
Sbjct: 296 YGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKT 355

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++ +N+       
Sbjct: 356 GIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAYKINK------- 408

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                 D+ +     A+E+ P  +I+  +  QK++DQ+ SL L+
Sbjct: 409 ----------------------DNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLF 446

Query: 877 -LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 447 VEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 491


>gi|109287943|ref|YP_654637.1| hypothetical protein MIV065R [Invertebrate iridescent virus 3]
 gi|123862746|sp|Q196Z5|RIR1_IIV3 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|106073566|gb|ABF82095.1| hypothetical protein MIV065R [Aedes taeniorhynchus iridescent
           virus]
          Length = 630

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 182/664 (27%), Positives = 280/664 (42%), Gaps = 93/664 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   R+  F+ LGLQ L D Y           PQ  F  +A        + E  A   Y+
Sbjct: 4   IDESRNNLFDALGLQRLKDSYMKEDES----SPQERFAFIAR---QFCADDEPLAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S      S+P L    T+     +CFL  + D   G+     E + L+   GG+    
Sbjct: 57  YMSQHWLSPSSPQLSFGRTKQGLPIACFLPYLHDTARGLIDTWAEVSELSMIGGGI---- 112

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               GLG  I   + KS G+IP L+  + +  A  QG  R+G+  AYL+  H ++  FL+
Sbjct: 113 ----GLGVGIRQPDEKSVGIIPHLRTYDASCTAYKQGQTRRGSYAAYLDISHPEILSFLN 168

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRV---TQNAGWTLFSP----------------- 504
            R+  GD   +  +++    +PD FMK++   +  A +    P                 
Sbjct: 169 TRRVGGDHNYKLLNLHNGVNVPDSFMKKIWILSTLAPFVKMDPCPTTETLFKKAVTTLKD 228

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEI-------KVFRKISAVALWRKMLTMLFETG 557
                  D +  E   A    +               KV   I A  LW +++    ETG
Sbjct: 229 SRYFGADDRWLGEVSFAALAEQLDVVNRWDLIDPHTGKVKETIKATELWERIILTRAETG 288

Query: 558 HPWITFKDPCNIR--SPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
            P+I + D  N      Q+++G+ +  SNLC+E+ L +    TAVC L S+NL  +F   
Sbjct: 289 EPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDETRTAVCCLASLNL-DYFDKW 347

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             +             VL   ID    T+++A  S  + RAIG+G +GF S L    +  
Sbjct: 348 CNNEQFYLDVATYLDNVLQYFIDHAPPTLKRAVHSARSERAIGIGALGFHSYLQSKMVDI 407

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A  I  +  + IS H    ++EL + RG      G+                    
Sbjct: 408 ESLPAYLINKKIFKTISSHLERVNLELGELRGEAPDCVGT-------------------- 447

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKS 793
                                 G R S+  AIAP AT + I G +  S +P   N+Y + 
Sbjct: 448 ----------------------GRRFSHMTAIAPNATSSIIMGNTSPSCEPFRANIYKQD 485

Query: 794 NMSGDFTVVNSFLVNELKQR---DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +SG F   N  L   L++R   +   E + S +K HDGS+ ++ ++    KK+  T  E
Sbjct: 486 TISGSFVTYNKHLKRLLEERIPDNQARERVWSSIKMHDGSVQHLNQLTVQEKKVFKTWPE 545

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I+ + L+  A+ RQKWIDQ+QS +L+ +       +  I+ +AWL GLKT YY RSR   
Sbjct: 546 INQLSLVMLAADRQKWIDQSQSTSLFFNPDERISYVHKIHLKAWLHGLKTLYYFRSRKIL 605

Query: 910 SVEK 913
           +V+K
Sbjct: 606 TVDK 609


>gi|53728875|ref|ZP_00348265.1| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207636|ref|YP_001052861.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|165975604|ref|YP_001651197.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251972|ref|ZP_07338143.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247134|ref|ZP_07529186.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256173|ref|ZP_07537960.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260606|ref|ZP_07542298.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126096428|gb|ABN73256.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875705|gb|ABY68753.1| ribonucleoside-diphosphate reductase alpha subunit 1
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|302649402|gb|EFL79587.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856383|gb|EFM88534.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865354|gb|EFM97250.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869683|gb|EFN01468.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 554

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 260/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ +   +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALDRIRFIAEH-AERKLGIEGYADKFYHYMGRGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSVIRN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGHDWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L SSS+E+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSSSDES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+            +E+A +   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSKDMPFLERANRFAT 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S +A++  +   + +    + AS ELA+  G     
Sbjct: 322 RHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQEKTLKASQELAKRFGEPELL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E +   + ++DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEIWESILHNDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 460 VQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINIMVHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQYSMSAAQV 541


>gi|294083957|ref|YP_003550714.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663529|gb|ADE38630.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 573

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 139/636 (21%), Positives = 247/636 (38%), Gaps = 102/636 (16%)

Query: 318 QAFF---MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL-SSCFL 373
           + F+   +R+A  L     +  +   +F ++L +  F+ +       G        +CF+
Sbjct: 30  EDFYSKIVRIADSL----KDSSEHFEDFKDVLRNMRFLPAGRVQNAMGAARQTTAFNCFV 85

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + V  D +  I     E A   +  GG+G D++ +R  G  I     KS G + F+ + +
Sbjct: 86  SGVIGDSMESIMQRATEAAETMRRGGGIGYDFSRLRPRGDRIKSLESKSSGPVSFMGIFD 145

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                +   G R+GA    L   H D+E+FL  + N+     +    N +  + D FM  
Sbjct: 146 SVCQTIASSGHRRGAQMGVLRIDHPDIEQFLTAKHNS----DKLTGFNISIGVTDEFMMH 201

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           + Q                   GK F + Y          + + ++++   ALW  ++  
Sbjct: 202 LQQ-------------------GKPFPLKY----------DGRTYKEVDPEALWDMVMRS 232

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-- 610
            ++   P + F D  N  +   +   + ++N C E  L +       C LGS NL+ +  
Sbjct: 233 TWDWAEPGVLFIDQINRLNNLWYCETIEATNPCGEQPLPA----YGACLLGSFNLVKYVN 288

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                F+ D+  + IRT VR +DNVID   + + + +      R +GLG+    +A  +L
Sbjct: 289 MEEKMFNLDQFEADIRTVVRAMDNVIDRTIYPLPEQEAEAKAKRRMGLGVTALANAGEML 348

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SPE ++  + +++ +  +A   S +LA E+GA+  F    + QG F    I  L 
Sbjct: 349 GLPYGSPEFMDFTETTLKALRDYAYDTSADLAHEKGAFPLFDPVKYPQGEF----IQQLP 404

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
           +                ++++++   G+RNS+  +IAPT TI+      S  I+P +   
Sbjct: 405 K----------------DIQEKIGAYGIRNSHLTSIAPTGTISLTADNVSSGIEPPFSLY 448

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y ++    D   +                  + D  +  G  G              TA 
Sbjct: 449 YDRTIQQFDGHQIER----------------VEDYAFTQGVSG-------------RTAN 479

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI     +   +  Q+++D A S    + D+ S      +Y +AWL G K     R   A
Sbjct: 480 EISAEEHLSVLAMAQQYVDSACSKTCNVGDDVSYDDFKNLYMKAWLSGCKGITTFR---A 536

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
             +    L  V    N                   C
Sbjct: 537 AGLRYGILNEVKPADNDNQPKAEACFIDPESGQKEC 572


>gi|67920554|ref|ZP_00514074.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858038|gb|EAM53277.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 1116

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 133/453 (29%), Positives = 236/453 (52%), Gaps = 27/453 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             K+++   DG+  + N  ++  +V+ AC+  ++V+S  + +     + DG++  +++  
Sbjct: 30  ESKIRVRRRDGSWTALNIVKIRAVVDWACAD-REVNSIALEAGLTTRLRDGITTREIQDN 88

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVL-TTVYKKPQKATHHEMQCLYPEYFCRY 259
           LI  +  +    EP++  +  R  +  L ++ L +  Y+        + +    +Y  R 
Sbjct: 89  LINCALEMCSPDEPDWRYIAGRLHIWSLWKDTLVSRGYQYGNYEIVAKTKIDAKQYDNRL 148

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +           +    +L    + +  + D  ++Y G  +L  RY L       E+PQ 
Sbjct: 149 L-----------TYSTAELQEAGSWINPDWDTDYDYAGAVLLTSRYLLDD-----ELPQE 192

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+  A+ LA  E+ + +   A  FY  ++      +TP L N       L+SCF+ ++ 
Sbjct: 193 AFLTCALLLATVESPENRLPWAKRFYEAIAKGKVSLATPILANLRVPGGSLTSCFILSID 252

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  IF  +   A ++K  GG+G + + +R  G+ + G N  S GVIP++K+ NDTA+A
Sbjct: 253 DNLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGVIPWIKLLNDTAIA 312

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV    
Sbjct: 313 VNQGGRRAGAVTVGLDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKE 372

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P +V      +L +L+G++FE AY   E + DR EI ++++++A  L++ ++  
Sbjct: 373 EWTLVDPYQVKEKLGIELAELWGEKFEEAYGLIEAELDR-EITLYKRVNARELFKTIMRS 431

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             ETG P++ FKD  N  +P +HVG +   NLC
Sbjct: 432 QVETGMPYLAFKDTINKANPNKHVGYIPGVNLC 464



 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/391 (23%), Positives = 156/391 (39%), Gaps = 68/391 (17%)

Query: 553  LFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETA-VCNLGSINLLA 609
              E       + D      P++H+G+ +   +  CTE   N +  + A  CNL S+NL  
Sbjct: 777  RVEKVELTCRYDDTYCFSEPKRHLGMFNGILTGQCTESFSNVTPGKFAHCCNLVSLNLAN 836

Query: 610  HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                   + ++L      +VR+LDN IDI       AK  N  +R +G+G MG    L  
Sbjct: 837  ------IEEEELDYLCNISVRILDNTIDITNPPFNDAKAHNDRYRTVGVGCMGLADWLAK 890

Query: 670  LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
              + Y +   +       E + +     S+ELA+ER  Y++F+GS W +G+       + 
Sbjct: 891  KGLTYEN---ITEISNLFEEVGYWCTHTSMELAKERSPYNAFEGSDWSKGLL------IG 941

Query: 730  AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            ++  D    N + +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y   
Sbjct: 942  SKPVDWFVENASKKERWVQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRF 1001

Query: 790  YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +      G   +   F+     +   W                            +    
Sbjct: 1002 FYDKWAKGTIPIAPPFI-----KESFW---------------------------FYHENK 1029

Query: 850  EIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMG 896
             ++   ++++ +  Q+WID   S+ L         + DEP    + K +      AW  G
Sbjct: 1030 TLEQQKVVKAVATIQQWIDTGISMELLFNLNQGVYFADEPERCLTAKDIFETLLLAWKEG 1089

Query: 897  LKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
             K  YY+R+     V+K   K  D    A  
Sbjct: 1090 CKAIYYVRT-----VQKDDFKESDNNCTACA 1115


>gi|190149419|ref|YP_001967944.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249852|ref|ZP_07336056.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244960|ref|ZP_07527057.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251677|ref|ZP_07533582.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253913|ref|ZP_07535765.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258367|ref|ZP_07540108.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262737|ref|ZP_07544364.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914550|gb|ACE60802.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651419|gb|EFL81571.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854125|gb|EFM86333.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306860874|gb|EFM92882.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863117|gb|EFM95059.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867551|gb|EFM99398.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871882|gb|EFN03599.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 554

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 260/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ +   +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALDRIRFIAEH-AERKLGIEGYADKFYHYMGRGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSAIRN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGHDWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L SSS+E+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSSSDES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+            +E+A +   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSKDMPFLERANRFAT 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S +A++  +   + +    + AS ELA+  G     
Sbjct: 322 RHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQEKTLKASQELAKRFGEPELL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E +   + ++DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEIWESILHNDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 460 VQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINIMVHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQYSMSAAQV 541


>gi|307249356|ref|ZP_07531350.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858650|gb|EFM90712.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 554

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 259/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ +   +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALDRIRFIAEH-AERKLGIEGYADKFYHYMGRGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSAIKN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGHDWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L SSS+E+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSSSDES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+            +E+A +   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSKDMPFLERANRFAT 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S +A++      + +    + AS ELA+  G     
Sbjct: 322 RHRALGLGVLGWHSYLQANNIAFDSFQAMQKNSLIFKTLQEKTLKASQELAKRFGEPEIL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E +   + ++DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEIWESILHNDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 460 VQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINIMVHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQYSMSAAQV 541


>gi|3183696|emb|CAA07028.1| ribonucleotide reductase large subunit [Felid herpesvirus 1]
          Length = 785

 Score =  347 bits (889), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 165/658 (25%), Positives = 287/658 (43%), Gaps = 64/658 (9%)

Query: 296 LGLQ---ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----------- 341
           LGLQ      + Y  ++    +E    FF+R+A   A   T + ++A+            
Sbjct: 133 LGLQSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFK 192

Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSG 398
            F+  LS    + +TP +   G     L+SC+L +  + D    I   +++ A +    G
Sbjct: 193 SFFFYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRG 252

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G               +   ++GV+P LK+ +   +A++    R   VC Y+E WH D
Sbjct: 253 GIGICLQNFNK-----KLSKECTKGVLPLLKLLDSMTIAISDSE-RPTGVCIYVEPWHAD 306

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAG------WTLFSPDEVSDLH 511
           +   L++R     D+  R  ++ +  W PDLF  R  ++ G      WTLF   E S L 
Sbjct: 307 IRSILNMRGMLASDEDSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFDDAE-SHLS 365

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            LYGKEF   YE  E      +      +    +   ++     TG P++ FKD CN   
Sbjct: 366 KLYGKEFNEEYERLEAAGMGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHY 420

Query: 572 PQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANNQFDYDKLAST 624
                G  + +SNLCTEI   ++     VCNL SI+L       AH  +  F    L   
Sbjct: 421 HFDTRGDALTTSNLCTEIIQKATDTRRGVCNLISIDLPRCLRRIAHDQSLYFSIPLLIRA 480

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             TA   ++ ++       E   +    +R++GLG+ G  +    L +   S EA  +  
Sbjct: 481 AYTATIFVNPMMRAGNFPTEATMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNP 540

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           + +E +   +I AS  L +     + +F+ S++ +G+ P D+      +  +        
Sbjct: 541 QILESLLLGSIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTPLIHFKK------- 593

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W +L+  +   G+ NS  +A+ PT + + +   S+   P + NL+ K   +G+    N
Sbjct: 594 --WQQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPN 651

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-----HATAFEIDPMWLIE 858
             L+  +++    + A ++ +   + +  +I     DL          TAFE D   LI+
Sbjct: 652 LQLMRTIRRLFPRECARLAVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLID 711

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMGLKT-TYYLRSRSATS 910
             + R  ++DQ+QS++L++ EP+  KL       +   A+  GLKT  YY + + AT+
Sbjct: 712 MCADRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 769


>gi|7330058|gb|AAF60047.1|AF210726_68 large ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 788

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 173/757 (22%), Positives = 300/757 (39%), Gaps = 99/757 (13%)

Query: 252 YPEYFCRYIEEGVKARL-LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           Y   F   + + V+A +  HE+ +D  L        Y       YL     YD Y L   
Sbjct: 77  YLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNLVNCGYLSAVRFYDTYVLRTQ 136

Query: 311 GS--RIEMPQAFFMRVAMGLALK-------------------ETEKEKRAVEFYNLLSSF 349
           GS    E     FMRVA+ +A +                   E ++       ++ +SS 
Sbjct: 137 GSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYISSQ 196

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              C+TP L ++G R  QLSSCF+   ++  +   +    +E + L     G+G D +  
Sbjct: 197 IVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVSSF 256

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                       + + +   LK+ N      N    R     AY+E WH  + +FL+ + 
Sbjct: 257 -----------AEHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNAKM 305

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENY 525
               +  R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI    Y
Sbjct: 306 PENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEI---EY 360

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNL 584
            R    G+      +   ++   ++  + +TG P++  K+  N     +  G  ++ SNL
Sbjct: 361 NRLVAAGKH--SSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCSNL 418

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-------------ANNQFDYDKLASTIRTAVRV 631
           C EI       + +VCNL  I+L                  +  F ++ +   +  AV +
Sbjct: 419 CAEIVQQP-EGQASVCNLAHISLPKCLRPHRGESGVEPGKGDVTFGFELIDDAVEAAVII 477

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  I       E  ++     R++G+G+ G       L   Y   ++ ++  E  + + 
Sbjct: 478 VNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDADSAKLDLEIFQAMY 536

Query: 692 FHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           F A+  + E  L  E   +  ++ +   QGVF   +        D +  +      W++L
Sbjct: 537 FTAVQTTHEIVLLGEGTPFRGWERNQLAQGVFHWQTW-------DGVKPSHPPLERWEQL 589

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + +   G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N      
Sbjct: 590 GRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFFKR 649

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +K  DL        ++ + G + +      D  KI  TAF+  P+  +E A  R  ++DQ
Sbjct: 650 VKPGDL------RTVRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFVDQ 703

Query: 870 AQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKLNA 925
           +QSLN +L E   +    +  +    + +GLKT  YY R +  T            KLNA
Sbjct: 704 SQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCRIQKQT------------KLNA 751

Query: 926 VPVTD----PNSSTHSLGIPSSCTSDTE----CEVCQ 954
           +   D     N S+          +D E    C  CQ
Sbjct: 752 LQCLDQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788


>gi|56807758|ref|ZP_00365618.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 522

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 131/541 (24%), Positives = 222/541 (41%), Gaps = 73/541 (13%)

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D
Sbjct: 3   GVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPD 62

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FL  +K   D++ R   ++    +PD F +   +N    LFSP  V   + +     
Sbjct: 63  IIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYNVEKEYGIPFNYL 122

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +I     E  A+        KI A  L  ++  +  E+G+P+I   D  N  +     G 
Sbjct: 123 DITNMYDELVANPKI--TKTKIKARDLETEISKLQQESGYPYIINIDTANKAN--PIDGK 178

Query: 579 VHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           +  SNLC+EI    +                  CNLGS N+L    +  F       +I+
Sbjct: 179 IIMSNLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSPDF-----GRSIK 233

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T  R L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D 
Sbjct: 234 TMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDI 293

Query: 686 SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN----- 739
               +++  +  S  +A+ER   +  F+ S +  G +    +      + +L  +     
Sbjct: 294 YFMLLNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDH 353

Query: 740 -RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +      
Sbjct: 354 FIPQASDWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQ----- 408

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                              E  I  + Y    + + + IP      + +A+++D   +I+
Sbjct: 409 -------------------EKKIGKIYYPANGL-STDTIP-----YYTSAYDMDMRKVID 443

Query: 859 SASRRQKWIDQAQSLNLY--------------LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             +   + +DQ  SL L+                + + + L  +   A+  G+K+ YY+R
Sbjct: 444 VYAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSMYYIR 503

Query: 905 S 905
           +
Sbjct: 504 T 504


>gi|53715111|ref|YP_101103.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
 gi|52217976|dbj|BAD50569.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
          Length = 798

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/661 (20%), Positives = 254/661 (38%), Gaps = 95/661 (14%)

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLT 374
              R+A  +A  E +      + + + L   F ++    S  T   +  +   LS+CF+ 
Sbjct: 1   MHWRLANEVARIEAKYPNALSSEQLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVPDDLYGIFGALQ---ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +          ++   E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GIDGSADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++   V Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM 
Sbjct: 121 SNSTREVAQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMS 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +   +T   P +                               ++I A  LW+K++ 
Sbjct: 176 AAVEGRKYTQQYPID------------------------SDHPTTVKEIEASNLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVH----SSNLCTEITLNSSSE-ETAVCNLGSIN 606
             +++  P + F D     S       +     S+N C EI L           NL S  
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYV 271

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------------------------T 642
           +     +  FD+D     +  A R++D++ID+                            
Sbjct: 272 VNPFTKDAYFDFDLFHKHVALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGL 331

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SV++A
Sbjct: 332 WEKIYKKSGQGRRTGVGITAEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMA 391

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERGA+  +         F    I  L E                 L + +K  G RN  
Sbjct: 392 KERGAFDVYDSEREKNNPF----INRLREADP-------------ALYEDMKKYGRRNIA 434

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE----LKQRDLWD 817
           C+ IAPT T + +   +  I+P +  +Y  +  ++ + T V    V+E     ++  ++ 
Sbjct: 435 CLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFH 494

Query: 818 EAMISDLKYHD------GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
              ++ ++ +        +   I+ +        AT+ ++D +  +    + QKW+D + 
Sbjct: 495 HKFVTWMEANGYDPAKRYTQEEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSI 554

Query: 872 SLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S+ + L     ++L + +Y +AW  G K     R  S + V  S     D K    P   
Sbjct: 555 SVTINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKP 614

Query: 931 P 931
           P
Sbjct: 615 P 615


>gi|167856023|ref|ZP_02478768.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219871495|ref|YP_002475870.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis SH0165]
 gi|167852862|gb|EDS24131.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219691699|gb|ACL32922.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parasuis SH0165]
          Length = 569

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 162/622 (26%), Positives = 257/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY  +   +F  S+P   N
Sbjct: 36  LQRGYLLEGT-----TALDRIRFIAEH-AERKLGIEGYADKFYYYMGRGYFSLSSPIWSN 89

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 90  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSLIKN-NGK 148

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 149 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 204

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 205 YGVCVGHDWLESMKAGDPYK---------------------------------------- 224

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L S++EE+
Sbjct: 225 --RQLWAKILQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSNNEES 282

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+            +++A +   
Sbjct: 283 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDVVMSEFIEKSAEIPFLDRANRFAK 336

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+G+G++G+ S L   +IP+ S EA++  +   + +    + AS ELAQ  G     
Sbjct: 337 RHRALGIGVLGWHSYLQANNIPFDSFEAMQKNNIIFKTLKEKTMKASEELAQRFGEPELL 396

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 397 KG------------------------------------------YGRRNTTLMSIAPTKS 414

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E +   +  +DGS
Sbjct: 415 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEQLLREKGLDTEEIWESILLNDGS 474

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++ ++ +  K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 475 VQHLTQLSEHEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINIMVHPATPARDLNQLY 534

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 535 LTAEELGLKSIYYQYSMSAAQV 556


>gi|291302019|ref|YP_003513297.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571239|gb|ADD44204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
          Length = 946

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/624 (21%), Positives = 231/624 (37%), Gaps = 38/624 (6%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G      + +    E   LL   +F  ++P  FN GT  PQ +S+CF+ +V D +  I  
Sbjct: 119 GYFASPKDAQIFEEELTWLLLHQYFSFNSPVWFNVGTPDPQQVSACFILSVDDTVDSILN 178

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRAS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATR 237

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+EEF+D +    D  R   D   A +  DL  K +     QNA  +
Sbjct: 238 RAAKMVILDVDHPDIEEFIDTKAREEDKVRALRD---AGFDMDLGGKDIVSVQYQNANNS 294

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE     +  G               R +     ++ A  ++RKM    +E   P 
Sbjct: 295 VRVTDEFMRAVEAGGD---------YALRARLDGSEIERLDAKTVFRKMAQAAWECADPG 345

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           I F +  N        G +  SN C+E     +S     CNL S+NL+    +   FD +
Sbjct: 346 IQFDNIINDWHTNPETGRITGSNPCSEYMHIDNSS----CNLASLNLMKFLKDDGSFDVE 401

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +   +  ++  I       E   K+   HR +G+G     + L      Y S E 
Sbjct: 402 LFTKAVEFVITAMEISISFADFPTEAITKNTRAHRQLGIGYANLGALLMASGFAYDSDEG 461

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +A      ++  +   S ELA   G Y ++  +                 V+    M+
Sbjct: 462 RAVAAGITSLMTGVSYRRSAELAGVVGPYDAYALNADAHKRVMRKHAAACDNVKTYGVMD 521

Query: 740 R----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
           R     +   W          G RNS    IAPT TI  +    +  I+P    +  K  
Sbjct: 522 REILKAAVSEWQNGNNIGDKNGWRNSQASVIAPTGTIGFMMDCDTTGIEPDLALVKFKKL 581

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE---- 850
           + G    + +  V    +   +    I  +  +    G++   P  L+  H + F+    
Sbjct: 582 VGGGSMQIVNQTVPRALKTLGYQTESIEAITEYIAEHGHVVDAP-GLRPEHYSVFDCAMG 640

Query: 851 ---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I  M  +   +  Q ++  A S  + + E  + +  + IY ++W +GLK     R  
Sbjct: 641 ERSISAMGHVRMMAAAQPFVSGAISKTVNVPESATVEDFEEIYFESWKLGLKALAVYREN 700

Query: 907 SATSVEKSTLKGVDGKLNAVPVTD 930
           S      S  K          V +
Sbjct: 701 SKVGQPLSVSKKDTEADEPEKVIE 724


>gi|222475860|ref|YP_002564381.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222454231|gb|ACM58495.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 562

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 157/606 (25%), Positives = 258/606 (42%), Gaps = 108/606 (17%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           P+    ++A   A +  ++E  A  FY+ +S   +  ++P   N G       SCF + +
Sbjct: 39  PKERIRQIAEN-AEEILDEEGFADRFYDYMSRGFYSLASPVWANFGLDSGLPISCFGSYM 97

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I     E   + K  GG    +  +R  G+ I   NGKS G   F ++ +    
Sbjct: 98  EDNMESILYTHAEVGEMTKLGGGTSGYFGDIRPRGSPITN-NGKSNGSYSFTELFDTAIN 156

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+QG  R+G    Y++  H D+EE+L+++     +     D+     I D + + +   
Sbjct: 157 VVSQGETRRGQFAGYIDVEHDDLEEWLNIKT----EGDPVQDIFYGVIIGDEWFQEMVDG 212

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
                                                            W K++      
Sbjct: 213 DE------------------------------------------EKRETWAKIIETRINI 230

Query: 557 GHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           G P+I F+D  N   PQ +      +++SNLCTEI L ++ +E+ VC L S+N L +   
Sbjct: 231 GVPYIIFRDNMNEGKPQVYKDKDYEINASNLCTEIALPATPDESFVCCLSSMNALHY--- 287

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSNHTHRAIGLGLMGFQSAL 667
              D  K    + T  R LD V++           +E+A +    HRA+G+G++G+ S L
Sbjct: 288 ---DEWKDTDAVETLTRFLDAVMEEFIQKAEGTQFMERAVRFAKRHRAVGIGVLGWHSYL 344

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               IP+ S EA++  ++    I   +  AS ELA E G     +G              
Sbjct: 345 QSNMIPFDSMEAMQENEQIFRTIREKSYEASEELADEFGEPEMLEG-------------- 390

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSY 786
                                        G RN+  M++APT + + I G VS SI+P  
Sbjct: 391 ----------------------------YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLK 422

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N +V+       T  N FL   LK+R      +   +  +DGS+ +++ + D+ K++  
Sbjct: 423 SNYFVRDGAKLKSTQKNRFLEAILKERGRDGREVWDSIAQNDGSVQHLDCLTDEEKEVFK 482

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           T  EI  M +I  A++RQK IDQAQSLN+ +D  E S K+++ +Y +AW  G+K+ YY  
Sbjct: 483 TFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWKKGVKSLYYQH 542

Query: 905 SRSATS 910
           S +A  
Sbjct: 543 SVNAAQ 548


>gi|220917435|ref|YP_002492739.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955289|gb|ACL65673.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 928

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/618 (19%), Positives = 238/618 (38%), Gaps = 29/618 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN G   HPQ S+CF+  V D +  I  
Sbjct: 116 GYFASEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     +    G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLS-GGGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DV EF++ +    D+ ++   +  A +     ++    ++ +   + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCK---ADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNAN 291

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             V  + D + +      E   +   R + +    I A  L R++    +  G P + F 
Sbjct: 292 HSV-RVTDAFMRAVLEDREW--KLTARTDGQALETIRARDLMRQITEAAWLCGDPGMQFD 348

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAS 623
              N   P  +   +++SN C+E        + + CNL S+NL+   +    FD +    
Sbjct: 349 TTINAWHPCPNTDRINASNPCSEYMFL----DDSACNLASLNLMHFRSIEGGFDVESFKR 404

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +   + ++    +      K++  +R +GLG     + L    +PY S      A
Sbjct: 405 AVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYANLGALLMASGLPYDSDAGRACA 464

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSL---WDQGVFPIDSIGLLAEVRDELAMNR 740
                 ++  A + S  +A+  G ++ ++ +              + L+     E  +  
Sbjct: 465 AAITSLMTGEAYAMSARIAERMGPFAGYEKNRDPFLAVIRKHAQHVDLVDPTLVEAGLLA 524

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +R  W +  ++    G RN     +APT TI  +    +  I+P    +  K  + G  
Sbjct: 525 AARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGM 584

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAFE------ 850
             + +  V    QR  +    I+ +      +  IE  P    +   +   AF+      
Sbjct: 585 LKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAPGLRPEHAAVFDCAFKARNGTR 644

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I  M  I      Q ++  A S  + +    + + ++  Y ++W +GLK     R    
Sbjct: 645 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIENAYLESWKLGLKAVAIYRDGCK 704

Query: 909 TSVEKSTLKGVDGKLNAV 926
            S   +T K  + K +AV
Sbjct: 705 RSQPLNTGKEQEEKKDAV 722


>gi|297565747|ref|YP_003684719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
 gi|296850196|gb|ADH63211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
          Length = 1014

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/631 (23%), Positives = 251/631 (39%), Gaps = 99/631 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428
           +  VPDD+ GI    ++   +A        D++ +R  G  I G+ G S G + FL    
Sbjct: 211 VLEVPDDMGGIIDTARDAVAMAGKGQEPHVDFSLLRPEGTPIKGSGGTSSGPVSFLLEIF 270

Query: 429 ---------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                                 V +     V QGG R+GA  A L   H D+ +FL  + 
Sbjct: 271 DNFLEWGNLGAEKSGPVATLRYVYSPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKD 330

Query: 468 NTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYE 523
              +         N +  + + F   +  +  W +  P EV   +  Y   G+      E
Sbjct: 331 LDREAAEGDISTFNISILVTEAFWNTLQADGLWAVE-PAEVPGKYYPYLVQGEYTGALPE 389

Query: 524 NYERQAD--RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578
             +R+ D  R       K+ A  LW ++    + TG P + F D  N  S  +H+G    
Sbjct: 390 LPDREVDGARAIPVYEGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKHLGERYR 449

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVID 637
           + ++N C EI L         C+LG+INL A+   +  FDY    + +RT +R LDNV+D
Sbjct: 450 IRATNPCGEIPLTVGEP----CDLGAINLAAYVREDKTFDYATFRADVRTCIRFLDNVLD 505

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  + ++ + R +GLG+MG   AL  + +PY+S E  +   + M  +   AI A
Sbjct: 506 VNVFALEDNRIASQSLRRLGLGVMGLADALIKMGLPYSSEEGRQAVAKIMNAMREEAILA 565

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  L +ERG +  +                   E+R                        
Sbjct: 566 SERLGEERGVFPIYAQ-----------HPEKFPEIRPR---------------------- 592

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL------- 810
            RN   + +APT T + + GVS  I+P +     +        +++   V ++       
Sbjct: 593 -RNVAVLTVAPTGTTSMLMGVSSGIEPMFSPFMWRRIGGQYKALLHPLFVEQMEKYPPTP 651

Query: 811 --KQRDLWDEA-MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             ++   WD   +I  ++ H GS+  IE IP +++ +   A ++ P+  +      Q+  
Sbjct: 652 PFEKEGAWDWDKLIEAIQAHHGSVRGIEGIPTEIQAVFEGAHDVPPLDHVRMQGVVQRAF 711

Query: 868 D------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTL 916
           D       + S  +   ++ +   ++  Y +A+L G K     R  S      SV KS  
Sbjct: 712 DAFGLAANSLSKTINLPNQATVADVEAAYTEAYLTGCKGITVYRDGSRDLQVLSVSKSEK 771

Query: 917 KGVDGK----LNAVPVTDPNSSTHSLGIPSS 943
           K  +      +    +  P  +T   G PS+
Sbjct: 772 KETNESTHTVVQPALLEPPTPATAYAGTPST 802



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
            F+     I   +Y    +G  +      F RVA  +A  E  + +   + EF+ L++S 
Sbjct: 7   HFDDHAQAIARRQYLQESDGDVL----GMFRRVADWVAGAEKPEARAYWSEEFFRLMASK 62

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GTRH  + +CF+       P    G+    ++ A++ K  GG G +  
Sbjct: 63  RFCPGGRVLAGAGTRHGNVLNCFVQGATENDPSSFNGVLEVAKKLALVTKVGGGNGVNLD 122

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           P        HG  GK+ G                   +R     AYL   H DV++F+ 
Sbjct: 123 PYPPR----HGGAGKAAGP------------------RRTVRGFAYLRADHPDVQDFIQ 159


>gi|239928523|ref|ZP_04685476.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291436848|ref|ZP_06576238.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291339743|gb|EFE66699.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 966

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/602 (21%), Positives = 232/602 (38%), Gaps = 34/602 (5%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENA 391
            + E    E    L    F  ++P  FN GT  PQ +S+CF+ +V D +  I    +E  
Sbjct: 121 ADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEG 180

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA 450
           M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R+ A   
Sbjct: 181 MIFKGGSGAGLNLSRIRSS-KELLSSGGNASGPVSFMRGADASAGTIKSGGATRRAAKMV 239

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSD 509
            L+  H D+E+F++ +    +  R   D      +  D       QNA  ++   DE   
Sbjct: 240 VLDVDHPDIEDFIETKVKEEEKIRVLRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMQ 299

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +  GK    A         R   +V  ++ A AL+RK+    +    P I + D  N 
Sbjct: 300 AVEQGGKFGLRA---------RMTGEVIEEVDAKALFRKIAEAAWACADPGIQYDDTINN 350

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAST 624
                  G + +SN C+E     ++     CNL S+NL+    ++      F+ ++    
Sbjct: 351 WHTCPESGRITASNPCSEYMHLDNTS----CNLASLNLMKFLKDDGKGNQSFETERFQKV 406

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   +  +D  I       +K  ++    R +G+G     + L      Y S     ++ 
Sbjct: 407 VELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALSG 466

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF---PIDSIGLLAEVRD-ELAMNR 740
                ++  A   S ELA   G Y  +  +            D+ G    + D +  +  
Sbjct: 467 AITSLMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMKQHADANGTAVRMDDLDTPVWA 526

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +   W ++ +  +  G RNS    +APT TI       +  ++P    +  K  + G  
Sbjct: 527 AATEAWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGS 586

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDP 853
             + +  V +  +R  + E  I  +  H    GN+   P    +  ++   A     I P
Sbjct: 587 MQIVNGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKHEHYEVFDCAMGERAISP 646

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q WI  A S  + +    + ++++ IY +AW +G+K     R        
Sbjct: 647 MGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQP 706

Query: 913 KS 914
            S
Sbjct: 707 LS 708


>gi|108760764|ref|YP_631136.1| vitamin B12-dependent ribonucleotide reductase [Myxococcus xanthus
           DK 1622]
 gi|108464644|gb|ABF89829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Myxococcus xanthus DK 1622]
          Length = 930

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/697 (19%), Positives = 249/697 (35%), Gaps = 81/697 (11%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRVAMGL---------ALKETEKEKRAVEFYN 344
           L   ++  +YF    G   R    +    RV   L           ++ ++E    E  +
Sbjct: 78  LATNVVASKYFRGTPGTPERETSVRKLVARVVDTLTQWGVEGGYFTRDADREAFHAELTH 137

Query: 345 LLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           LL       ++P  FN G    PQ S+CF+ +V D++  I    +   ML KY  G G++
Sbjct: 138 LLLRQKASFNSPVWFNVGVEAQPQCSACFINSVEDNMDSILTLARTEGMLFKYGSGTGSN 197

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +RG    +    G + G + F++  +  A  +  GGK R+ A    L   H D+ EF
Sbjct: 198 LSTIRGS-KELLAGGGTASGPVSFMRGFDAFAGVIKSGGKTRRAAKMVILNAEHPDILEF 256

Query: 463 LDLRKNTGDDRRRT-------------------HDMNTANWIPDLFMKRVTQNAGWTLFS 503
           +  + +                            + N +  + D FMK V  +A WT  S
Sbjct: 257 IRCKSSEEKKAWALIEAGYDPSFNGEAYSSVFFQNSNNSVRVTDAFMKAVVDDATWTTRS 316

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             +   L D Y                           A  L+R++       G P + F
Sbjct: 317 VRDGQPL-DTY--------------------------QARELFREISEAAHLCGDPGMQF 349

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLA 622
               N          +++SN C+E        + + CNL S+NL+     +  FD     
Sbjct: 350 DTTVNSWHTCSTTARINASNPCSEYMFL----DDSACNLASLNLMHFRTIDGDFDVTAFR 405

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +   +   + ++  + +  E+ +K++H +R +GLG     + L    +PY SP     
Sbjct: 406 HAVDILLMAQEIIVGNSRYPTERIEKNSHDYRPLGLGYANLGALLMASGLPYDSPAGRNY 465

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE---LAMN 739
           A      +   A + S  LA+++G ++ +  +                 +  E     + 
Sbjct: 466 AGAITSLMCGEAYAMSARLAEKQGPFAGYAKNAEPMLGVIRKHRKAAYHIAPEGVSQGLF 525

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD 798
              +  WD      +  G RNS    +APT TI  +    +  I+P    +  K  + G 
Sbjct: 526 AAQKDAWDRALALGEEHGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDIALIKYKKLVGGG 585

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE----- 850
              + +  V    ++  + +    D+  +     +I     +  +   +   AF+     
Sbjct: 586 MLKIVNQTVPLALEKLGYPQTQSQDIISYLDKQDTIEGAPHLKPEHLPVFDCAFKPAQGE 645

Query: 851 --IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR- 906
             I  M  I+     Q ++  A S  + +  + + + ++  Y +AW  GLK     R   
Sbjct: 646 RSIHWMGHIQMMEACQPFLSGAISKTVNMPSDATVEDIEKAYMEAWKRGLKAIAVYRDGC 705

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             T    ++ + V     A     P  +      P +
Sbjct: 706 KRTQPLNTSKETVKDTRAAKATVAPEPAPAVQPEPRA 742


>gi|251792577|ref|YP_003007303.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533970|gb|ACS97216.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           aphrophilus NJ8700]
          Length = 562

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/622 (26%), Positives = 260/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ ++  ++  S+P   N
Sbjct: 29  LQRGYLLEGT-----SALERIRFIA-EYAEQKLGIEGYAEKFYHYMARGYYSLSSPIWSN 82

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D +  I   + E  +++K  GG    +  +R  G++I   NGK
Sbjct: 83  FGLDRGLSISCFGSYIGDSINAIMSTVAEIGVMSKLGGGTSGYFGDIRPRGSNITN-NGK 141

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+   T   ++QG  RKG    Y++  H D+EE+LD+      +      M 
Sbjct: 142 SNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDIDHGDIEEWLDIHT----EGNPIQLMY 197

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 198 YGVCVSHEWLESMKAGDPYK---------------------------------------- 217

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               +W K+L    ETG P+I FKD  N   P  +     ++H+SNLC+EI L SS +E+
Sbjct: 218 --RQIWAKLLQRKTETGIPYIFFKDNANAGRPDVYKDRNMMIHASNLCSEIALPSSEDES 275

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+        N   +++A K   
Sbjct: 276 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDIVMSEFIAQSANIQFMDRANKFAR 329

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   ++ + S EA++  +   + +    + AS ELAQ  G     
Sbjct: 330 RHRALGLGVLGWHSYLQSKNMAFDSFEAMQHNNIIFKLLQEKTLKASKELAQRFGEPEIL 389

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M++APT +
Sbjct: 390 KG------------------------------------------YGRRNTTLMSVAPTKS 407

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS SI+P   N YVK          N FL   LK++ L  + +   +  +DGS
Sbjct: 408 SSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPFLEALLKRKGLDRDDIWESILLNDGS 467

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++  + +D K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  K L+ +Y
Sbjct: 468 VQHLTELTEDEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSVNIMVHPATPAKDLNQLY 527

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 528 LTAEELGLKSIYYQYSMSAAQV 549


>gi|322515074|ref|ZP_08068082.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118954|gb|EFX91131.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 554

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 162/622 (26%), Positives = 260/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A  +   E  A +FY+ ++  +F  S+P   N
Sbjct: 21  LQRGYLLEGT-----TALERIRFIAEH-AEHKLGIEGYADKFYHYMARGYFSLSSPIWSN 74

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D ++ I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 75  FGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSKIGGGTSAYFGDIRPRGSAIKN-NGK 133

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 134 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIDEWLDIHT----EGNPIQLMY 189

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 190 YGVCVGHDWLESMKAGDPYK---------------------------------------- 209

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               LW K+L    ETG P++ FKD  N   P  +      VH+SNLCTEI L SS++E+
Sbjct: 210 --RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDKNMTVHASNLCTEIMLPSSNDES 267

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+            +++A +   
Sbjct: 268 FVCCLSSMNLL------YFDEWKDTEAPEVLTYFLDVVMSEFIEKSKDMPFLDRAHRFAT 321

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S +A++  +   + +    + AS ELA+  G     
Sbjct: 322 RHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNLIFKTLQEKTLKASQELAKRFGEPEIL 381

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M+IAPT +
Sbjct: 382 KG------------------------------------------YGRRNTTLMSIAPTKS 399

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N YVK          N FL   L+++ L  E +   + ++DGS
Sbjct: 400 SSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEIWESILHNDGS 459

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 460 VQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSINIMVHPATPARDLNQLY 519

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 520 LTAEELGLKSIYYQYSMSAAQV 541


>gi|261749411|ref|YP_003257096.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497503|gb|ACX83953.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 571

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/625 (26%), Positives = 265/625 (42%), Gaps = 106/625 (16%)

Query: 305 YFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           Y   I G  +   E P   + R++   A    +K K   +F+N+L     + STP + N 
Sbjct: 27  YLTTIKGGYLLDGETPFEAYKRLSENAAKI-LKKPKIEKKFFNILWKGWLIPSTPVMVNL 85

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN-GK 420
           GT      SCF   V D +Y I+    E A+L+K+ GG   D++ +R +G+ I     G 
Sbjct: 86  GTEKGLPISCFSGRVGDSMYEIYRKNLEMAILSKHGGGTSYDFSLIRSVGSPIKNGTLGT 145

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G+IPF+K  +   +A  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H+++
Sbjct: 146 SDGIIPFVKSYDSAIIASKQGSTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCHNVH 205

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               + + FM++V +  G                                          
Sbjct: 206 QGVILSNSFMEKVLKKNG------------------------------------------ 223

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSSEET 597
              +LW   L    +TG P++ FKD  N     + +++   +H SNLC+EI L +    T
Sbjct: 224 KERSLWINTLKERVKTGEPYLFFKDNANRNLPENWKKNGLKIHHSNLCSEIMLPTDESHT 283

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKKSNH 651
            VC L S+NL  +         K   T+  A+  LD V+        N   IE A +   
Sbjct: 284 LVCCLSSLNLYKYVE------WKDTQTVFYAILFLDAVLQEFINKGKNIKGIEDAVRFAE 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +G+ S L    IP+ S ++  +  +    I   +  A+  LA+E      +
Sbjct: 338 KSRALGLGALGWHSYLQSEMIPFISVKSEILTHDIFGKIRSESQKATQYLAKE------Y 391

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S W+ G                                     G RN   MA+AP  +
Sbjct: 392 GESEWNIGT------------------------------------GRRNLTLMAMAPNRS 415

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            A + G  SQ ++P   N+YV  +  G     N +L   L +       +   +    GS
Sbjct: 416 SAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKILIKSGYNLPEVWEQIANEKGS 475

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
              +  + +  K +     EI+ + LI+ AS RQK+IDQ QS+NL   + +  K ++ ++
Sbjct: 476 CLGLTGLSEKEKNVFLCFKEINQLELIKQASIRQKYIDQGQSINLAFHQNTPAKFINKVH 535

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
            +AW +GLK+ YY RS S    E +
Sbjct: 536 LEAWKIGLKSLYYYRSESILRAENT 560


>gi|313159184|gb|EFR58557.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes sp. HGB5]
          Length = 851

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 149/681 (21%), Positives = 258/681 (37%), Gaps = 107/681 (15%)

Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKE--TEKEKRAVEFY 343
           ++ F  + L   +   +Y L  + G+  E  P+    R+A  +   E          E +
Sbjct: 23  KKYFEGDDLAATVWVSKYALKDSFGNIYETSPKQMHERIAAEIERIERKYPDPMSKEEVF 82

Query: 344 NLLSSFHF---MCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYS 397
            LL  F +        T   +  +   LS+CF+       D   GIF   +E   L K  
Sbjct: 83  ELLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRR 142

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L   H 
Sbjct: 143 GGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSIKHP 201

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D E F+D + +TG    +    N +  I D FM+       +    P             
Sbjct: 202 DAERFIDAKVDTG----KVTGANVSIKIDDEFMRAAIAGKKYHQQFP------------- 244

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +  +  YE+            I A  LW K++   +++  P + F D     S      
Sbjct: 245 IKSDHPKYEQD-----------IDAKKLWDKIIHNAWKSAEPGVLFWDTIIRESVPDCYA 293

Query: 578 ----VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
               V  S+N C EI L         C L ++NLL++  N      +F++D+  + +  A
Sbjct: 294 DEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFTKEAKFNFDRFKAHVGKA 349

Query: 629 VRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQ 664
           +R++D++ID+    +E                        K +      R  GLG+    
Sbjct: 350 MRMMDDIIDLELEKVEQIIAKIAADPEDEEVRRVELELWKKIRTMAQKGRRTGLGITAEG 409

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y S EA+  A E  + ++  A  ASV +A +RGA+  +  S          
Sbjct: 410 DMLAALGLLYGSDEAIAFAVEVQKTLAVEAYRASVRMAAQRGAFPIYDASKEKNNPM--- 466

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  + E                EL   ++  G RN   + IAPT T + +   +  I+P
Sbjct: 467 -IARIREADP-------------ELYAEMEKNGRRNIAMLTIAPTGTTSLMSQTTSGIEP 512

Query: 785 SYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            ++ +Y +                     + ++ +++    +  L  +      +E I D
Sbjct: 513 VFRTVYKRRRKINPSDHDTHVDYEDETGEKFQEYNVYHHNFVKWLDANGYDTSKLETISD 572

Query: 840 DL--------KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYR 890
                         ATA +ID +  ++     QKW+D + S+ + L     + L   +YR
Sbjct: 573 AELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVADVYR 632

Query: 891 QAWLMGLKTTYYLRSRSATSV 911
            AW  G K     R      V
Sbjct: 633 TAWECGCKGVTVYRDGCRDGV 653


>gi|29135242|ref|NP_803872.1| ORF306 [Pseudomonas phage phiKZ]
 gi|18996771|gb|AAL83207.1|AF399011_306 PHIKZ306 [Pseudomonas phage phiKZ]
          Length = 779

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 167/799 (20%), Positives = 294/799 (36%), Gaps = 84/799 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205
           I+  DGT  +++  ++    E A   L D V    V+ +  + + D  S  +L+  LI  
Sbjct: 22  IIKLDGTEEAYSPAKINGWGEWAAQHLGDKVDWSSVVMDAVQALGDKTSSQELQLQLIEE 81

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 K  +Y  +  R     LR++          KA    M+           ++G+ 
Sbjct: 82  CLNR--KTWSYYLMAGRLYAIYLRKKFYGLNGIPTVKALQTRMR-----------KDGII 128

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
            +L        +   +   + ++ D    +  L  +  +Y L     G   E  Q  +MR
Sbjct: 129 VKL---DYSSKEYAQIEKIIDHDLDLLCPHFSLHHIRGKYALRNRKTGQEYETAQFVYMR 185

Query: 324 VAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM LA KE  + +      +Y LLS+      TP   N GT+    +SC L    D+  
Sbjct: 186 MAMALAEKEPAETRMTHVENYYKLLSNKILSAPTPNYVNLGTKLRGFASCCLFASGDNGV 245

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +        ++ + S G+G +    R +G  I       QG  P++ V      A  Q 
Sbjct: 246 SLAMGDYIANIMTQSSAGIGVNLMT-RSIGDPIRNGLIIHQGKKPYIDVIGKAVRANLQN 304

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV-TQNAGWT 500
           G R GAV  Y   +  + +    LR     + R+  D++ A      F K+   ++    
Sbjct: 305 G-RGGAVTCYYSAFDPEADMITQLRNPRSTEDRKNRDLHYAFLSNKFFAKKAAQKDGMIF 363

Query: 501 LFSPDEVSDLHDLYG----KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +F+P    DLHD +      +F   YE YE             ++A  L + ML   +ET
Sbjct: 364 VFNPFTAPDLHDAFYSGDIDKFIKLYEKYEADPK----FEKTYVNARDLLKSMLVEAYET 419

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------SSEETAVCNLGSIN 606
           G  +    D   +         ++SSNLC EI   +          SSE+     + + +
Sbjct: 420 GTIYSAQID--ELNHHTPFKEPIYSSNLCLEIAEPTKPYYRMEDLYSSEDHGRGEIATCS 477

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L A   +N  D          A++++D  I    +       +     + G+G+MG  + 
Sbjct: 478 LAAIAVDNVPDKQTYEMAAYYALKMIDYCILNAEYAFPHLALTAKNRMSAGVGIMGLATH 537

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           +    + Y+S           E   +  I AS+++++ERG       + W +G  P  + 
Sbjct: 538 MARAGLKYSSDAGKAEIHFIAERHMYFLIKASLKISKERGNAPWIHKTKWPEGWTPRKTY 597

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPS 785
                V   +        PWDEL+K +K   G+ +S   A  P    +   G +    P 
Sbjct: 598 NK--SVDTIIEGGFEELYPWDELEKEIKENGGIAHSVLAAYMPGEASSKALGSTNGPYPV 655

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
            + +  K++          +                                 DD   ++
Sbjct: 656 RRLILNKTDNGARVLWAAPYG--------------------------------DDDSYVY 683

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF-----IYRQAWLMGLKTT 900
            +A++I    LI+  +  QKW DQ  S +LY      +K+        +      G+KT 
Sbjct: 684 ESAYDIPTKDLIDCYAIIQKWTDQTISADLYRRIVGSEKISSNEMLGNHFYMVKRGMKTR 743

Query: 901 YYLRSRSATSVEKSTLKGV 919
           YY+   +A  ++  +L+  
Sbjct: 744 YYVNLETAAGLDIKSLERA 762


>gi|18138465|ref|NP_542569.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32453892|ref|NP_861655.1| ribonucleotide reductase [Halovirus HF1]
 gi|18000406|gb|AAL54989.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32346460|gb|AAO61366.1| ribonucleotide reductase [Halovirus HF1]
          Length = 805

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/772 (22%), Positives = 295/772 (38%), Gaps = 141/772 (18%)

Query: 304 RYFLHI-NGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFN 360
           RYF     G+ IE     F RVA  +A  E +   +  A EF + + +  FM ++PTL N
Sbjct: 44  RYFRKDSEGNIIEGADDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSPTLMN 103

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT   QLS+CF+    DD+  IF   Q+ A++ +  GG+G  ++ +R  GA I+ T G+
Sbjct: 104 AGTDMNQLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINSTGGE 163

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F++V ++T   V QGGKR+GA    L   H D+  F+  ++N G+      + N
Sbjct: 164 ASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGEFA----NFN 219

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSD------------------------------- 509
            +    D F++ V     +TL+ P+   +                               
Sbjct: 220 ISVATTDNFIEAVDAQESYTLYDPETDYEEPYTVRELSAHFYSPEYQDNPRDAFDDGEGA 279

Query: 510 --------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                           +LYG+   +  +    +  R E+    ++ A  +W  M+   + 
Sbjct: 280 VVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMELPAAFIWDVMIDGAWR 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
            G P +   +  N +               T         E   CNLG INL    + + 
Sbjct: 340 NGEPGLFNFEESNRQHSFDVEEYPEFRMNATNPCAEQMLVEYEACNLGHINLSLMLSEDA 399

Query: 615 -------------------------------QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                                            D+++L  TI    R LDNV+  +   I
Sbjct: 400 PTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEAGTRFLDNVVTQSDFPI 459

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +  +     R IGLG+MGF   L+ + +PY + ++ E+A   M +I      AS  LA 
Sbjct: 460 PEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVMRYIDRRGTWASHRLAL 519

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+S +  S +     P +     A      A        W           +RN N 
Sbjct: 520 ERGAFSYWDKSKYAD---PTEYDEWFA------ARTGLDPEDWAG------GFPIRNHNI 564

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSN---MSGDFTVV--NSFLVNELKQRDLWDE 818
             IAPT T + I   +   +P+Y     K+    + GD  +V  + + +  L++ DL  +
Sbjct: 565 TTIAPTGTTSMIGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFDDYFLRTLEENDLDVD 624

Query: 819 AMISD----LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           A+  +    ++ ++    N   IPD++ +I  T  ++            Q++ D   S  
Sbjct: 625 AVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVTTQDLSSEQHGLMQRAFQEFCDSGISKT 684

Query: 875 LY-LDEPSGKKLDFIYRQAWLMG-----LKTTYYLRSRSATSVEKST------------- 915
           +   +E +   +   Y+ A   G     +K     R  S      +T             
Sbjct: 685 VNLPNEATHDDVADAYQLALDEGRRGAVIKGLTVYRDGSRDQQVLTTRVDNNLDDEGDRD 744

Query: 916 -------LKGVDGKLNAVP---VTDPNSSTHSLGIPSSCTSD----TECEVC 953
                  LKG   +  AV    V++ +  + +L  P     +     +C VC
Sbjct: 745 DDLLELYLKGEVSEKAAVQLGIVSEDDVGSDTLTCPECGDGELEKTDDCAVC 796


>gi|229543872|ref|ZP_04432931.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
 gi|229325011|gb|EEN90687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
          Length = 852

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 166/737 (22%), Positives = 279/737 (37%), Gaps = 128/737 (17%)

Query: 312 SRIE-MPQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG--TRH 365
             +E   +    R A GLA  E  +EKR   F   YN L + +F+ +   L+ +G  T  
Sbjct: 124 KPLEVYYEQIAKRNATGLAAVEKTEEKRNEWFEKFYNELVNLNFIPAGRVLYGAGSETEV 183

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  VPD   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 184 TYFNCYVMPFVPDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 243

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDDRR 474
            +L         V QGG R+GA    L  WH D+ EF+            L +NT D+  
Sbjct: 244 SWLDDIAKLTHLVEQGGSRRGAQMIMLAVWHPDIVEFIISKMQNPRILRFLIENTNDEWI 303

Query: 475 R---------------THDMNTANW--------------IPDLFMKRVTQNAGWTLFSPD 505
           R                  M                   +     +++     +T+ +P+
Sbjct: 304 RKLAHDKLKFTPLSEMERQMYHGIVNYKHIPGQGGFTEEVMKEAEEKLETGGHYTVHNPE 363

Query: 506 ---------------------------EVSDLHDLYGKEFEIAYENYERQADRGEI---- 534
                                      +  D+ +   +E  I  E + +  D  E     
Sbjct: 364 FLTGANISVCLTKEFMEAVEQDAEFELKFPDVENYSEEEMRIYNEEWHKIGDVREWEKLG 423

Query: 535 ---KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
              +V+RKI A  LW  +      +  P + F D  N  +  +  G  V ++N C E  L
Sbjct: 424 RKVRVYRKIKAKELWNLINICATYSAEPGVFFIDNANDMTNAKAYGQKVVATNPCGEQPL 483

Query: 591 NSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +VCNL ++NL         +  +D+L  T+RT VR+ DNVID   + +++ KK
Sbjct: 484 AP----YSVCNLAAVNLAKMVDKETKEVRWDQLKQTVRTGVRMQDNVIDATPYFLKENKK 539

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L  +   Y S E  ++ D+  E I+  A  AS+E+A+E+G++
Sbjct: 540 QALGERRVGLGVMGLADLLIYMEKEYGSEEGNKLVDKVFETIATEAYRASIEIAKEKGSF 599

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   ++          L     E    +        ++K +   G+RNS+ + +AP
Sbjct: 600 PFLTGETEEE-------TNRLRHAFTETGYMKNMPED---IRKAILKHGIRNSHLLTVAP 649

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  VN+ +V E   +               
Sbjct: 650 TGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVNADIVQEYLDK--------------- 694

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
               + E   D L     TA ++ P    +     Q+W+D + S  +      + ++++ 
Sbjct: 695 ----HPETDKDHLPNWFVTAMDLAPEAHADVQCVIQRWVDSSISKTVNAPRGYTVEQVEK 750

Query: 888 IYRQAWLMGLK--TTYYLRSRSATSV---------EKSTLKGVDGKLNAVPVTDPNSSTH 936
           +Y + +  G K  T Y   SR +  +         EK     V      V + D      
Sbjct: 751 VYERLYKGGAKGGTVYVDGSRDSQVLTLKAEEPQEEKREKAEVKHAKQHVVLVDTIPDIR 810

Query: 937 SLGIPSSCTSDTECEVC 953
           S  +         C +C
Sbjct: 811 STNVTYGNEIGDTCPIC 827


>gi|289749069|ref|ZP_06508447.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
 gi|289689656|gb|EFD57085.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
          Length = 611

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 150/599 (25%), Positives = 241/599 (40%), Gaps = 92/599 (15%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R   + +     ++   K+   DGTL+ F+  R+E  V  A                   
Sbjct: 34  RRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRA------------------- 74

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                            +R +   +P+     A+ + + L R +               +
Sbjct: 75  -----------------AREVACDDPDMPGTVAKAVADALGRGIA-------------PV 104

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRY 305
           + +      R  E G+        +       L  A  L   RD        + +L +RY
Sbjct: 105 EDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERY 164

Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLF 359
            LH   G   E       R A  +A  E + E     + A  F  LL +  F+ ++PTL 
Sbjct: 165 LLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLM 224

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T G
Sbjct: 225 NSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGG 284

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +       
Sbjct: 285 TASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHF 341

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D F++ V +N    L +P                               +  +
Sbjct: 342 NLSVGVTDAFLRAVERNGLHRLVNPRTGK---------------------------IVAR 374

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  L+  +       G P + F D  N  +P    G + ++N C E+ L         
Sbjct: 375 MPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES---- 430

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IGLG
Sbjct: 431 CNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLG 490

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           +MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +
Sbjct: 491 VMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFAR 549



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V          V   + +   +             I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREVACDDPDMPGTVAKAVADALGR------------GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQ 132
           G   + R Y++YR+ R+++R A+
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAK 141


>gi|296123412|ref|YP_003631190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
 gi|296015752|gb|ADG68991.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
          Length = 1032

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 141/658 (21%), Positives = 244/658 (37%), Gaps = 70/658 (10%)

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH---------------- 365
             +A G      + E    E   L    +   ++P  FN G  H                
Sbjct: 129 WGIADGYFASREDGENFYNELAWLCLHQYGSFNSPVWFNVGLYHQYGVAGSKGNYRFDLK 188

Query: 366 -------------PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
                        PQ S+CF+ +V D++  I       AML K+  G G D + +R    
Sbjct: 189 TQEVVRAETSYEFPQASACFIQSVDDNMEDIMRLATSEAMLFKFGSGTGTDLSSIRSAKE 248

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G   G + F++V +  A  V  GGK R+ A    L+ WH D+ EF+  +     
Sbjct: 249 KLS-GGGTPSGPLSFMRVYDQIAAVVKSGGKTRRAAKMQSLKDWHPDILEFIQCKLKEEK 307

Query: 472 DRRRTHD--MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             R   +     +N+  + +   + QNA  ++   DE           F  AYE  ++  
Sbjct: 308 KARVLIESGEYDSNFNGEAYGSIMYQNANLSVRLSDE-----------FMRAYEENKKWV 356

Query: 530 DRGEIKVFRKISAVA---LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +   A     + R+M    +  G P + F    N      + G +++SN C+
Sbjct: 357 THWVTDATKPGPAYEARYVMRQMAEGAWHCGDPGVQFDTIINRWHTCPNDGRINASNPCS 416

Query: 587 EITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL S+NL      + +FD ++  S I   +   + ++D   +   +
Sbjct: 417 EYMFL----DDTACNLASLNLRKFQREDGRFDVERYRSAINIFLTAQEILVDHASYPTPQ 472

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              ++H +R +GLG     S L  + IPY S     I       ++  A   S  +A   
Sbjct: 473 IAANSHKYRPLGLGYANLGSLLMSMGIPYDSAAGRGICGALTSLLTGQAYLTSSRIAAFA 532

Query: 706 GAYSSFKGS---LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           G +  ++ +   +        D++  +     E  + + +   WD++    +  G RNS 
Sbjct: 533 GPFEGYRNNADPMLRVMRMHRDAVDRIDSSCPE-ELRKAAEEVWDDVVDSGRRFGFRNSQ 591

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWD--- 817
              +APT TIA +    +  I+P    +  K    G     VN  +   LK         
Sbjct: 592 ATVLAPTGTIAFMMDCDTTGIEPDIALVKYKQLAGGGLMKIVNRTVPLALKTLGYDSPEV 651

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQA 870
           E ++  ++ HD +I     +  D   +   AF+       I     I+  +  Q ++  A
Sbjct: 652 ERIVKAIEEHD-TIEAATDLSPDHLAVFDCAFKPASGTRSIQWRAHIKMMAAAQPFLSGA 710

Query: 871 QSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            S  + +   S  + ++  Y + W +GLK     R  S  S   +  KG DG     P
Sbjct: 711 ISKTVNMPADSTVEDIEKAYAEGWRLGLKALAVYRDGSKQSQPLNVKKGGDGNKEVAP 768


>gi|153005059|ref|YP_001379384.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028632|gb|ABS26400.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 929

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/619 (20%), Positives = 239/619 (38%), Gaps = 29/619 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      +  +L+       ++P  FN G   HPQ S+CF+ +V D +  I  
Sbjct: 115 GYFATEEDAAAFEADLAHLVYRQKMSFNSPVWFNVGVEEHPQCSACFINSVGDSMDSILR 174

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     +    G++ G + F++  +  A  +  GGK R
Sbjct: 175 LAHTEGMLFKYGSGAGSNLSKIRSSKERLS-GGGEASGPVSFMRGFDAFAGVIKSGGKTR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF+  +    D+ ++   +  A +        V   A  ++F  
Sbjct: 234 RAAKMVILDADHPDIGEFVSCK---ADEEKKAWALIDAGYDG---GFNVKGGAYDSVFFQ 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    +    G    +  +       R +      I A  L R++    +  G P + F 
Sbjct: 288 NANHSIRVTDGFMRSVLDDRAWELTARTDGHALESIRARDLMRQITEAAWLCGDPGMQFD 347

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAS 623
              N          +++SN C+E        + + CNL S+NL+     +  FD +    
Sbjct: 348 TTINAWHTCPATDRINASNPCSEYMFL----DDSACNLASLNLMHFRGIDGAFDVESFKR 403

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   V   + ++    +  E+  K++  +R +GLG     + L    +PY S      A
Sbjct: 404 AVDLTVLAQEILVSNAKYPTEQIGKNSEDYRPLGLGYANLGALLMASGLPYDSDGGRACA 463

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWD-QGVF--PIDSIGLLAEVRDELAMNR 740
                 ++  A + S  +A+  G ++ ++ +     GV     + +  +     E  +  
Sbjct: 464 GAITALMTGEAYAMSARIAERMGPFAGYERNREPFLGVVRKHANHVDRIDPTFVERPLLD 523

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            +R  W +  +     G RN+    +APT TI  +    +  I+P    + Y K    G 
Sbjct: 524 AARDAWGDALRLGTQSGYRNAQLTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGV 583

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAFE------ 850
             +VN+ +   L++     +A+ S L++ D   +I     + D    +   AF+      
Sbjct: 584 LKIVNNTVPLALQRLGYSADAIASTLEFIDKVETIEGAPELRDAHLPVFDCAFKPQNGTR 643

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I  M  I      Q ++  A S  + +  E +   ++  Y +AW +GLK     R    
Sbjct: 644 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTEATPADIETAYLEAWKLGLKAIAVYRDGCK 703

Query: 909 TSVEKSTLKGVDGKLNAVP 927
            S   +T K  + +     
Sbjct: 704 RSQPLNTGKAKEEEKRESA 722


>gi|307151332|ref|YP_003886716.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 7822]
 gi|306981560|gb|ADN13441.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7822]
          Length = 1105

 Score =  344 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 137/484 (28%), Positives = 242/484 (50%), Gaps = 26/484 (5%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
             + S     +    K++++  +G+  + N  ++  +VE AC+G +DV+   + +     
Sbjct: 21  TVSNSTGGQLSHHHSKIQVIKRNGSNAALNVAKIREVVEWACAG-KDVNPIALEAGLTTR 79

Query: 189 MYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           + +G++  +++  LI  +  +   +EP++  V  R  +  L ++VL     +        
Sbjct: 80  LRNGITTREIQDNLINCALEMCSPEEPDWRYVAGRLHIWSLWKDVLAARGYQ-------- 131

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               Y +     IE  +  + +       +L    + +  + D  ++Y G  +L  RY L
Sbjct: 132 -YGDYEQTVKTKIENKLYDQRILVYSSQ-ELQEAGSWINSDWDTDYDYAGAVLLTSRYLL 189

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
                  E+PQ   +  A+ LA  ET   + K A +FY  ++      +TP L N    +
Sbjct: 190 PH-----ELPQEALLTCALLLASVETPENRLKWARKFYEAIAKRQVSLATPILANLRIPN 244

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             L+SCF++ + D+L  IF  +   A ++K  GG+G + + +R  G+ +      S GVI
Sbjct: 245 GSLTSCFISALDDNLESIFSEIANTARISKNGGGVGINVSRIRATGSWVMNKPNASGGVI 304

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P++K+ NDTA+AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     I
Sbjct: 305 PWIKILNDTAIAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVI 364

Query: 486 PDLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            D FM+RV     WTL  P EV      +L +L+G+EFE  Y   E      EI +++++
Sbjct: 365 TDEFMRRVIHKQDWTLVDPYEVRTKFGIELAELWGEEFEKVYAKIEAAILNEEILLYKRV 424

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC--TEITLNSSSEETA 598
           +A  L++ ++    ETG P++ FKD  N  +P +H G +   NLC   E  + +   + A
Sbjct: 425 NARELFKHIMRSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLCVAGETKILTDRGQIA 484

Query: 599 VCNL 602
           + +L
Sbjct: 485 IADL 488



 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 68/379 (17%)

Query: 565  DPCNIRSPQQHVGVVHS--SNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKL 621
            D      P +H+G+ +   +  CTE   N     E+  CNL S+NL         +  +L
Sbjct: 778  DTYCFNEPLRHLGMFNGILTGQCTESFSNVKPGQESHCCNLISLNLAN------LEESEL 831

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A   + +VR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E + 
Sbjct: 832  AEACKISVRLLDNTIDLTYPPFEAAKHHNNLYRTIGVGCMGLADWLAKRRLSY---EHLT 888

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                  E I +    +S+ELA+ERGAY+ F+GS W +G        + ++  +    N  
Sbjct: 889  HISHLFEEIGYWCTHSSMELAKERGAYTCFEGSDWSKGQL------IGSKPVEWFLENAH 942

Query: 742  SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                W +L   ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +
Sbjct: 943  HPERWAKLAADIQQYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPI 1002

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               ++     +   W                       + K         D   ++++ +
Sbjct: 1003 APPYI-----KESFWFY--------------------PENKVY-------DQNKVVKAIA 1030

Query: 862  RRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              Q+WID   S+ L         + ++P      K +      AW  G K  YY+R+   
Sbjct: 1031 VMQQWIDTGISMELLFNLNGGVYFPEDPERFLKAKDIYDTLILAWQEGCKAIYYIRT--- 1087

Query: 909  TSVEKSTLKGVDGKLNAVP 927
              V+K   K  D   ++  
Sbjct: 1088 --VQKDNFKDTDNSCSSCA 1104


>gi|294505969|ref|YP_003570027.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
 gi|294342297|emb|CBH23075.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
          Length = 560

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 162/627 (25%), Positives = 254/627 (40%), Gaps = 115/627 (18%)

Query: 298 LQILYDR-YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            +    R Y L   G     P+     +A   A    E +  A  FY  ++  ++  ++P
Sbjct: 22  ARTFLRRGYLLEGTG-----PEDRVREIAEH-AEGLLEMDGFADRFYEYMARGYYSLASP 75

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
              N G       SCF + + D +  I     E  M+ K  GG    +  VR  GA I  
Sbjct: 76  VWANFGLDRGLPISCFGSYIDDSMEAILDTHAEVGMMTKVGGGTSGYFGDVRPRGASITN 135

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            NG S G  PF ++ +     V+QG  R+G    Y++  H DVEE+L+++     +    
Sbjct: 136 -NGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPDVEEWLNIQT----EGDAI 190

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             M     + D +M+ +                                           
Sbjct: 191 QTMMYGVVVGDDWMEAMIDGDS-------------------------------------- 212

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSS 593
                  ALW K++      G P+I F+       PQ +      VH+SNLC+E+ L S 
Sbjct: 213 ----DKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDKGYDVHASNLCSEVLLPSG 268

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAK 647
            +E+ VC L S+N L +      D  K    + T  + LD V+            +++A 
Sbjct: 269 PDESFVCCLSSMNALHY------DDWKDTDAVETLTQFLDAVMQEFIDGAKGMAHMDRAV 322

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +    HRAIG+G++G+ S L    IP+ S EA     E  + I   + +AS ELA   G 
Sbjct: 323 RFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAASAELADRFGE 382

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
               +G                                           G RN+  MA+A
Sbjct: 383 PPVLEG------------------------------------------YGRRNATTMAVA 400

Query: 768 PTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT + + I G VS SI+P   N +V+       T  N  L   L+++    +A+  ++  
Sbjct: 401 PTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLKALLQEKGRDTDAVWDEIAL 460

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG--KK 884
            DGS+ +++ + D+ K +  T  EI  M +I+ A+ RQK IDQ+QSLNL +D  S   K 
Sbjct: 461 RDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAIDPGSTPVKD 520

Query: 885 LDFIYRQAWLMGLKTTYY-LRSRSATS 910
           ++ +Y +AW  G+K+ YY     +A S
Sbjct: 521 INRLYVEAWKKGVKSLYYQHGVNAAQS 547


>gi|197122652|ref|YP_002134603.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. K]
 gi|196172501|gb|ACG73474.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 925

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 125/618 (20%), Positives = 239/618 (38%), Gaps = 29/618 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN G   HPQ S+CF+  V D +  I  
Sbjct: 116 GYFATEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     +    G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLS-GGGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DV EF++ +    D+ ++   +  A +     ++    ++ +   + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCK---ADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNAN 291

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             V  + D + +      E   +   R + +    I A  L R++    +  G P + F 
Sbjct: 292 HSV-RVTDAFMRAVLEDREW--KLTARTDGQALETIRARDLMRQITEAAWLCGDPGMQFD 348

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAS 623
              N   P  +   +++SN C+E        + + CNL S+NL+   +    FD +    
Sbjct: 349 TTINAWHPCPNTDRINASNPCSEYMFL----DDSACNLASLNLMHFRSIEGGFDVESFKR 404

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +   + ++    +      K++  +R +GLG     + L    +PY S      A
Sbjct: 405 AVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYANLGALLMASGLPYDSDGGRACA 464

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWD-QGVF--PIDSIGLLAEVRDELAMNR 740
                 ++  A + S  +A   G ++ ++ +     GV       + L+     E  +  
Sbjct: 465 AAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVIRKHAQHVDLVDPTLVEPGLLA 524

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF 799
            +R  W +  ++    G RN     +APT TI  +    +  I+P    +  K  + G  
Sbjct: 525 AARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGM 584

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAFE------ 850
             + +  V    QR  +    I+ +      +  IE  P    +   +   AF+      
Sbjct: 585 LKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAPGLRPEHAAVFDCAFKARNGTR 644

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I  M  I      Q ++  A S  + +    + + ++  Y ++W +GLK     R    
Sbjct: 645 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIENAYLESWKLGLKAVAIYRDGCK 704

Query: 909 TSVEKSTLKGVDGKLNAV 926
            S   +T K  + K +AV
Sbjct: 705 RSQPLNTGKEQEEKKDAV 722


>gi|218442223|ref|YP_002380552.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 7424]
 gi|218174951|gb|ACK73684.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7424]
          Length = 1123

 Score =  343 bits (880), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 230/455 (50%), Gaps = 24/455 (5%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +    K++++  DG+  + N  ++  +VE AC G +DV+   + +     + +G++  ++
Sbjct: 31  SHHTSKIQVVKRDGSKAALNIAKIREVVEWACVG-KDVNPIALEAGLTTRLRNGITTREI 89

Query: 199 ETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  LI  +  +   +EP++  V  R  +  L ++ L     +            Y +   
Sbjct: 90  QDNLINCALEMCSPEEPDWRYVAGRLHIWSLWKDTLANRGYQ---------YGNYDQTVK 140

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             I+     R +     + +L      +  + D  ++Y G  +L  RY L       E+P
Sbjct: 141 TKIDHNQYDRRILVYSSE-ELQEAGTWINSDWDTDYDYAGAVLLTSRYLLPD-----ELP 194

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q   +  A+ LA  ET   + K A +FY  ++      +TP L N    +  L+SCF++ 
Sbjct: 195 QEALLTCALLLASVETPENRLKWARKFYEAIAKRQISLATPILANLRVPNGSLTSCFISA 254

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D+L  IF  +   A ++K  GG+G + + +R  G+ +      S GVIP++K+ NDTA
Sbjct: 255 IDDNLESIFSEVTNTAKISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILNDTA 314

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV  
Sbjct: 315 IAVNQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVMADEFMRRVIH 374

Query: 496 NAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
              WTL  P E+      +L +L+G+EFE  Y   E     GEI ++++++A  L++ ++
Sbjct: 375 KQEWTLVDPYEIRTKFGVELAELWGEEFEQVYSKIETAIHNGEITLYKRVNARELFKHIM 434

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               ETG P++ FKD  N  +P +H G +   NLC
Sbjct: 435 RSQLETGMPYLAFKDTINRANPNKHEGYIPGVNLC 469



 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 151/379 (39%), Gaps = 68/379 (17%)

Query: 565  DPCNIRSPQQHVGVVHS--SNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKL 621
            D      P +H+G+ +   +  CTE   N     E+  CNL S+NL         D   L
Sbjct: 796  DTYCFNEPLRHLGMFNGILTGQCTESFSNVKPGLESHCCNLVSLNLAN------LDNSDL 849

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              T + AVR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E + 
Sbjct: 850  EDTCKIAVRLLDNTIDLTHPPFEAAKNHNNLYRTIGVGCMGLADWLAKRRLSY---EHLT 906

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                  E I +    +S+EL+QERGAY+ F GS W QG        + ++  +    N  
Sbjct: 907  DISHLFEEIGYWCTLSSMELSQERGAYACFPGSDWSQGKL------IGSKPVEWFIENAH 960

Query: 742  SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                W +L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +
Sbjct: 961  HPERWAKLAEDIQLYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPI 1020

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               F+     +   W                       + K         D   ++++ +
Sbjct: 1021 APPFI-----KESFWFY--------------------PENKTY-------DQNKVVKAIA 1048

Query: 862  RRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              Q+WID   S+ L         + ++P      K +      AW  G K  YY+R+   
Sbjct: 1049 VMQQWIDTGISMELLFNLNQGVYFPEDPERFLKAKDIYDTLILAWREGCKAVYYIRT--- 1105

Query: 909  TSVEKSTLKGVDGKLNAVP 927
              V+K   K  D   ++  
Sbjct: 1106 --VQKDNFKDSDNSCSSCA 1122


>gi|13358415|ref|NP_078756.1| Ribonucleotide reductase large subunit [Lymphocystis disease virus
           1]
          Length = 547

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 247/587 (42%), Gaps = 92/587 (15%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
             E    + Y   +   F+ S+P L +S        +CF+  V +++  I     E   L
Sbjct: 36  GDEILETKLYLYATKEWFIYSSPILSDS--DDGLPIACFVMDVQNNIKDIIQHSVETKWL 93

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG    W  +          +  S G IPFL   +   +A  QG  RKG+  AYL+
Sbjct: 94  SINGGGCAGYWGQL-------KSPSDTSCGPIPFLHTIDADVLAYKQGSTRKGSYAAYLD 146

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EF+++R  TGD  R+  +++    + D FM  V QN  W L  P         
Sbjct: 147 ISHPDILEFINMRTPTGDLNRKNLNLHHGVNLTDAFMIAVEQNLNWNLIEPHT------- 199

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                                ++   + AV LWR +L   F TG P++ F D  N     
Sbjct: 200 --------------------NQIKETVPAVQLWRLLLETRFRTGEPYLNFIDTANRALHP 239

Query: 574 QHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                   + SSNLC EI L S  + TAVC L S+NL  +      D D     +   ++
Sbjct: 240 GLKAKNLKIKSSNLCNEIHLASDEQRTAVCCLASLNLEKY--EEWCDTD----LVECCIK 293

Query: 631 VLDNVIDINCHTIE----KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           +L+NV+D           KA  S    R+IGLG  G+   L    IP+ SP+A+ +    
Sbjct: 294 MLNNVLDYFIFKAPIELSKAVYSATCERSIGLGATGWAYYLMKNDIPFDSPKALFLTKLI 353

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
              I   A+  +  LAQ  G                                        
Sbjct: 354 FGNIKIKAVKTTCLLAQRFGPAP------------------------------------- 376

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
                 +K   +RN++ +AIAP +  + I   S SI+P   N YV    +G   ++N +L
Sbjct: 377 -----DLKAYNVRNAHLLAIAPNSNTSCILNTSPSIEPIAGNAYVHKTRAGTHLIINPYL 431

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
             +L+  +   E   + +   DGS+ ++  +  + K +  TA+EI+ + L+E A+ RQK+
Sbjct: 432 KQKLRNYNQDTEETWNSIILKDGSVQHLTFLSHEEKAVFKTAYEINALVLVEQAAVRQKY 491

Query: 867 IDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           I Q QSLNL+    + +K L  ++  AW +G K  YYLR+ ++ S E
Sbjct: 492 ICQGQSLNLFFPLNTQRKLLHTVHFNAWKLGCKGLYYLRTSASKSSE 538


>gi|163789925|ref|ZP_02184361.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159874865|gb|EDP68933.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 849

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 172/739 (23%), Positives = 281/739 (38%), Gaps = 134/739 (18%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  E+  EKRA     FY  L + +F+ +   L+ +G  
Sbjct: 122 VIEKPLEIFYEQIAKRNATGLAATESTPEKRAAAYATFYEELKNLNFIPAGRVLYGAGSE 181

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  VPD   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGD 471
           G + +L         V QGG R+GA    L  WH D+ EF+            L +NT D
Sbjct: 242 GAVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLIENTAD 301

Query: 472 DR---------------RRTHDMNTANW--------------IPDLFMKRVTQNAGWTLF 502
           D+                R   M  +                +      ++     +++ 
Sbjct: 302 DQVKKLANEKLTFTPFTEREIAMYQSILNYKNVPGYGGFDATMMKETADKLKTGGTYSVH 361

Query: 503 SPDEVSDLH--------------------------DLYGKEFEIAYENY--------ERQ 528
           +PD +S  +                          + Y  E    Y  +        E +
Sbjct: 362 NPDFLSGANISVCLTTDFMEAVENDTDYELRFPAVESYSPEDMEEYNAHWSEVGDVREWE 421

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
           A    +  +R I A  LW+ +         P I F D  N  +     G  V ++N C E
Sbjct: 422 ASGHAVHTYRTIKARELWKLITICATYAAEPGIFFIDNANKMTNAAAYGQKVVATNPCGE 481

Query: 588 ITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL ++NL  +A   +   D+ KL  T++  VR+ DNVID   + +  
Sbjct: 482 QPLAP----YSVCNLAAVNLAEMADKESGTIDFAKLKQTVQVGVRMQDNVIDATPYFLAD 537

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K     R +GLG+MG    L    + Y S E  ++ D+  E I+  A  AS+ELA+ER
Sbjct: 538 NEKQALGERRVGLGIMGLADLLIYCGVEYGSQEGNQLIDKVFETIAVSAYEASIELAKER 597

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++    G    +             +R+    +   +     + + V   G+RNS+ + 
Sbjct: 598 GSFPFLIGETDAE----------TTNLRERFLQSGYMKQMPKHIHEGVLKYGIRNSHLLT 647

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P Y   Y +S   G F  V + +V E                
Sbjct: 648 VAPTGSTGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEYLD------------- 694

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                  + E  PD+L K   +A  + P   ++     Q+WID + S  +   +  S ++
Sbjct: 695 ------QHPEADPDNLPKQFVSAMSLTPEAHVDVQCTIQRWIDSSISKTVNAPQGYSVEQ 748

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD-PNSSTHSLGIP 941
           +  IY + +  G K  T Y   SR    +   TLK  +   +     + P+S   ++ + 
Sbjct: 749 VQKIYERLYKGGAKGGTVYVDGSRDTQVL---TLKAEETLWDEETFDESPSSEQKTIQVA 805

Query: 942 SSC-------TSDTECEVC 953
           +              C +C
Sbjct: 806 AISDAKNYGNEIGDTCPIC 824


>gi|293389920|ref|ZP_06634254.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950454|gb|EFE00573.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 561

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 258/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ ++  ++  S+P   N
Sbjct: 28  LQRGYLLEGT-----SALERIRFIADY-AEQKLGIEGYADKFYHYMARGYYSLSSPIWSN 81

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D +  I   + E  +++K  GG    +  +R  G++I   NGK
Sbjct: 82  FGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSKLGGGTSGYFGDIRPRGSNITN-NGK 140

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+   T   ++QG  RKG    Y++  H D+EE+LD+      +      M 
Sbjct: 141 SNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDIDHGDIEEWLDIHT----EGNPIQLMY 196

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 197 YGVCVSHEWLEAMKAGDPYK---------------------------------------- 216

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               +W K+L    ETG P++ FKD  N   P  +     ++H+SNLC+EI L SS +E+
Sbjct: 217 --RQIWAKLLQRKTETGIPYLFFKDNANAGRPDVYKDRNMMIHASNLCSEIALPSSEDES 274

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+        N   +EKA K   
Sbjct: 275 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDTVMSEFIAQSANIQYMEKANKFAR 328

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S EA++  +   + +    + AS ELA   G     
Sbjct: 329 RHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMIFKLLQEKTLKASKELAHRFGEPEIL 388

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M++APT +
Sbjct: 389 KG------------------------------------------YGRRNTTLMSVAPTKS 406

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS SI+P   N YVK          N FL   LKQ+ L  E +   +  +DGS
Sbjct: 407 SSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPFLEALLKQKSLDREDIWESILLNDGS 466

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++  + +  K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 467 VQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSVNIMVHPGTPARDLNQLY 526

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 527 LTAEELGLKSIYYQYSMSAAQV 548


>gi|218296963|ref|ZP_03497649.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
 gi|218242666|gb|EED09202.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
          Length = 560

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/578 (28%), Positives = 244/578 (42%), Gaps = 103/578 (17%)

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            ++  ++  +TP   N G +     SC+ T V DD   I  A+ E  M++K  GG     
Sbjct: 61  YMARGYYSLATPVWANYGLKRGLPISCYGTYVEDDTASILRAVAEVGMMSKQGGGTSVYL 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I   NG+S G   F  + +      NQG  R+G   AYL+  H D+EE+  
Sbjct: 121 GALRPRGAPIRD-NGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHPDLEEWFR 179

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +++    +      +     IPD +M                                  
Sbjct: 180 IQR----EGSEIQSLFWGVSIPDRWM---------------------------------- 201

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
            E        K          W K+L   FE G P++ F+D  N   PQ        + +
Sbjct: 202 -EEMVAGDRAK-------RETWAKILKSRFEAGIPYLFFRDAANRGMPQVFRELGLRIWA 253

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI--- 638
           SNLCTEI L SS EE+ VC L S+NLL +      D  K    + T V  LD+V+D    
Sbjct: 254 SNLCTEIMLPSSPEESFVCCLSSLNLLHY------DEWKETDAVETLVIFLDSVLDDFIE 307

Query: 639 ---NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                  +E+A +    +RAIGLG++G+ S L    IP  S EA  +  E  + I   A 
Sbjct: 308 KAEGIPYLERAVRFARRYRAIGLGVLGWHSYLQSRMIPLESLEAQYLNQEIFKTIRERAE 367

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS  L +                  P D +  + E+++                     
Sbjct: 368 EASRWLRKRH----------------PEDELSGVGELKER-------------------- 391

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              RN+  +AIAPT + + I G VS SI+P   N Y+K          N FL   L+Q+ 
Sbjct: 392 ---RNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKAKVPFKNPFLEELLRQKG 448

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             +E +   +  H+GS+ +++ + D+ K +  T  EI  + L+  A+ RQ+++DQ QSLN
Sbjct: 449 KDEERVWRSILEHNGSVQHLDFLNDEEKAVFKTFAEISQLELVRQAAARQRYVDQGQSLN 508

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           L    E   K ++ +Y +AW  GLK+ YY  S+S    
Sbjct: 509 LVIHPEAPLKDVNELYLEAWRSGLKSLYYQWSQSVAQA 546


>gi|261868067|ref|YP_003255989.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413399|gb|ACX82770.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 561

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 258/622 (41%), Gaps = 112/622 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L                +A   A ++   E  A +FY+ ++  ++  S+P   N
Sbjct: 28  LQRGYLLEGT-----SALERIRFIADY-AEQKLGIEGYADKFYHYMARGYYSLSSPIWSN 81

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D +  I   + E  +++K  GG    +  +R  G++I   NGK
Sbjct: 82  FGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSKLGGGTSGYFGDIRPRGSNITN-NGK 140

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+   T   ++QG  RKG    Y++  H D+EE+LD+      +      M 
Sbjct: 141 SNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDIDHGDIEEWLDIHT----EGNPIQLMY 196

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +   +++ +     +                                         
Sbjct: 197 YGVCVSHEWLEAMKAGDPYK---------------------------------------- 216

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               +W K+L    ETG P++ FKD  N   P  +     ++H+SNLC+EI L SS +E+
Sbjct: 217 --RQIWAKLLQRKTETGIPYLFFKDNANADRPDVYKDRNMMIHASNLCSEIALPSSEDES 274

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNH 651
            VC L S+NLL       FD  K           LD V+        N   +EKA K   
Sbjct: 275 FVCCLSSMNLL------YFDEWKDTDAPEVLTYFLDTVMSEFIAQSANIQYMEKANKFAR 328

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   +I + S EA++  +   + +    + AS ELA   G     
Sbjct: 329 RHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMIFKLLQEKTLKASKELAHRFGEPEIL 388

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KG                                           G RN+  M++APT +
Sbjct: 389 KG------------------------------------------YGRRNTTLMSVAPTKS 406

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS SI+P   N YVK          N FL   LKQ+ L  E +   +  +DGS
Sbjct: 407 SSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPFLEALLKQKSLDREDIWESILLNDGS 466

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++  + +  K++  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + L+ +Y
Sbjct: 467 VQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQSVNIMVHPGTPARDLNQLY 526

Query: 890 RQAWLMGLKTTYYLRSRSATSV 911
             A  +GLK+ YY  S SA  V
Sbjct: 527 LTAEELGLKSIYYQYSMSAAQV 548


>gi|56420954|ref|YP_148272.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56380796|dbj|BAD76704.1| ribonucleoside-diphosphate reductase (major subunit) [Geobacillus
           kaustophilus HTA426]
          Length = 857

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/699 (23%), Positives = 272/699 (38%), Gaps = 122/699 (17%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSGTRH- 365
              +E+  +    R A GLA  E  +EKR   F   Y  L+S +F+ +   L+ +G+   
Sbjct: 123 DKPLEIFYEQIAKRNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKE 182

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDD- 472
           + +L         V QGG R+GA    L  WH D+ EF+            L +N  D+ 
Sbjct: 243 VSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIVSKMQNPRILRYLLENMEDEG 302

Query: 473 --------------RRRTHDMNTANW--------------IPDLFMKRVTQNAGWTLFSP 504
                           R   M  A                I     +++     +T+ +P
Sbjct: 303 IKKAARDKLKFTPLTERERAMYEAIVRYKNAPDYGGFTEEIIKDAEEKLRTGGTYTVHNP 362

Query: 505 D---------------------------EVSDLHDLYGKEFEIAYENYERQADRGEI--- 534
           D                              D+     +E  I  E +    D  E    
Sbjct: 363 DFLTGANISVCLTKEFMEAVEKDEEYALRFPDVETYSEEEMRIYNEKWHEVGDVREWEKM 422

Query: 535 ----KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
               +V+RKI A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  
Sbjct: 423 GYRVRVYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQP 482

Query: 590 LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ K
Sbjct: 483 LAP----YSVCNLAAINLANMVDKERKVIDYEKLKRTVEIGVRMQDNVIDATPYFLEENK 538

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R IGLG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G+
Sbjct: 539 KQALGERRIGLGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGS 598

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +    G   ++            ++R+        +   +++++ +   G+RNS+ + +A
Sbjct: 599 FPFLVGETEEE----------TRKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVA 648

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P +   Y +S   G F  V + +V E   +              
Sbjct: 649 PTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK-------------- 694

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                + E  P+ L     TA ++ P    +     Q+W+D + S  +   +  + +++ 
Sbjct: 695 -----HPEADPNHLPPWFVTAMDLPPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQ 749

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKL 923
            +Y + W  G K  T Y   SR A  +   TLK  + ++
Sbjct: 750 KVYERLWRCGAKGGTVYVDGSRDAQVL---TLKAEENQI 785


>gi|321496612|ref|YP_004207897.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332514|gb|ADW24402.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332597|gb|ADW24484.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
          Length = 772

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 163/759 (21%), Positives = 284/759 (37%), Gaps = 87/759 (11%)

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y + F   +E  + A L        +L+       Y+      YL  +  YD Y L  
Sbjct: 46  DEYRDVFKDVLEMELSAFLEKNKEGLQELLQQFMRNGYDNLVGRGYLSAKRFYDTYVLRG 105

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRA-----------------VEFYNLLSSFHFM 352
           +G  +E     F+RV+   A +  +    A                   F+ ++S+    
Sbjct: 106 SGK-VESVPFLFLRVSCFCAYQCLQNPCLADTVKALNSWVIDEVSLVKYFFRMVSTMTVC 164

Query: 353 CSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           C+TP L ++G +   LSSCF+    +  +   +     E   L +   G+G +       
Sbjct: 165 CATPILRSAGVQGANLSSCFIIDRDMTTERETVQAVCSELTSLLECKSGVGIN------- 217

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                  +   + +   L++ N      N    R  +   Y+E WH  +  FL  +    
Sbjct: 218 ---CAMFSHGEKSINSLLQMVNGITAYFNDSNVRPVSTALYIEIWHHQIMSFLTAKLPEN 274

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            +  R  ++     + DLF K    N    W LF P +   L  LYGK FE AY    R 
Sbjct: 275 PE--RCANVFQGVSVCDLFFKMYKNNPDGEWFLFDPGQFPGLTGLYGKTFEEAYMALVRD 332

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
                    + +        +++ + +TG P++  KD  N     +  G  + ++NLCTE
Sbjct: 333 GKFKASVPLKSV-----MFALVSSIVKTGGPYVMSKDAMNRHHWHETQGQAIVAANLCTE 387

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----------------ANNQFDYDKLASTIRTAVR 630
           +   +  ++ + CNL SI+L                      +  F Y  L   + TAV 
Sbjct: 388 VIQ-APGDDISTCNLASISLPECMHMHGNGHSEGGLSCGQTTDKTFCYSFLEKAVETAVF 446

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V++  I       EK  +     R++G+G+ G      +  + Y   ++ EI    ME +
Sbjct: 447 VINACIVGGMAPTEKVARG-QLFRSMGIGVQGLADVFAMCGLEYFDEKSEEIDSRIMESM 505

Query: 691 SFHAISASVELAQE--RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            F A+  S+ + +      +  ++ S   +G F         + R ++     S   W  
Sbjct: 506 YFTAVKTSMNIVKLGGGEPHKRWEKSKLSKGQFH---WQEFTDCRPKV----HSLSQWSA 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L       G  N+  +A+ PTA  + + G + S  P + N+  K +   +    N   ++
Sbjct: 559 LSTDCAMYGTYNAQFIALMPTAGTSQLTGYADSCYPFFGNMATKVSNKEEIMRPNRMFID 618

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            +   DL      + ++   G +  +     D  ++  +AFE  P   I  A  R  ++D
Sbjct: 619 SIVPDDL------AAIRQVGGDLAKLPPALADKYRLFKSAFEYSPEDYIRRARVRAPFVD 672

Query: 869 QAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKT-TYYLRSRSAT-SVEKSTLKGVDGKL 923
           Q+QS+ L+L+E    K   +  +   A  +GLKT  YY R +  T   + S + G     
Sbjct: 673 QSQSMTLFLNEKEASKASYVKDLLMYAQEIGLKTLMYYCRIKKETICCDFSCVPGPAATP 732

Query: 924 NAVPVTDPNSSTHSLGIPS--------SCTSDTECEVCQ 954
           + V    P S     G            C  +  C  CQ
Sbjct: 733 SPVSSFMPESDGDGEGQSGHVSIKRDRECDEEQCCSACQ 771


>gi|297529413|ref|YP_003670688.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
 gi|297252665|gb|ADI26111.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
          Length = 857

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 170/746 (22%), Positives = 279/746 (37%), Gaps = 139/746 (18%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSGTRH- 365
              +E+  +    R A GLA  E  +EKR   F   Y  L+S +F+ +   L+ +G+   
Sbjct: 123 DKPLEIFYEQIAKRNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKE 182

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDD- 472
           + +L         V QGG R+GA    L  WH D+ EF+            L +N  D+ 
Sbjct: 243 VSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIVSKMQNPRILRYLLENMEDEG 302

Query: 473 --------------RRRTHDMNTANW--------------IPDLFMKRVTQNAGWTLFSP 504
                           R   M  A                I     +++     +T+ +P
Sbjct: 303 IKKAARDKLKFTPLTERERAMYEAIVRYKNEPDYGGFTEDIIKDAEEKLRTGGTYTVHNP 362

Query: 505 D---------------------------EVSDLHDLYGKEFEIAYENYERQADRGEI--- 534
           D                              D+     +E  I  E +    D  E    
Sbjct: 363 DFLTGANISVCLTKEFMEAVEKDEEYALRFPDVETYSEEEMRIYNEKWHEVGDVREWEKM 422

Query: 535 ----KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
               +V+RKI A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  
Sbjct: 423 GYRVRVYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQP 482

Query: 590 LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ K
Sbjct: 483 LAP----YSVCNLAAINLANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENK 538

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R IGLG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G+
Sbjct: 539 KQALGERRIGLGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGS 598

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +    G   ++            ++R+        +   +++++ +   G+RNS+ + +A
Sbjct: 599 FPFLVGETEEE----------TRKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVA 648

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P +   Y +S   G F  V + +V E   +              
Sbjct: 649 PTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK-------------- 694

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                + E  P+ L     TA ++ P    +     Q+W+D + S  +   +  + +++ 
Sbjct: 695 -----HPEADPNHLPPWFVTAMDLPPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQ 749

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDG-----------------KLNAVP 927
            +Y + W  G K  T Y   SR A  +   TLK  +                     AV 
Sbjct: 750 KVYERLWRCGAKGGTVYVDGSRDAQVL---TLKAEENRIEEQLELLPEELEEKETKRAVV 806

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
           + D      +  +         C +C
Sbjct: 807 LVDTIQDVRATDVTIGSEVGNICPIC 832


>gi|327537908|gb|EGF24608.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica WH47]
          Length = 1040

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 142/704 (20%), Positives = 246/704 (34%), Gaps = 70/704 (9%)

Query: 296 LGLQILYDRYFL---HINGSRIEMPQAFFMRVAM-----GLALKETEKEKRAVEFYNLLS 347
           L   ++  +YF         R    +    RV       GLA    +  +    FY  L+
Sbjct: 98  LATNVVVSKYFYGDPKNTDERERSVRQLIHRVTRTISDWGLADGYFDTPEDGERFYRDLT 157

Query: 348 ----SFHFMCSTPTLFNSG-----------------------------TRHPQLSSCFLT 374
                 H   ++P  FN G                               +PQ S+CF+ 
Sbjct: 158 WLCLHQHGAFNSPVWFNVGLHAQYDVEGDMCNWHWDRTQNTTAQPDNPYEYPQGSACFIQ 217

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +V D++  I       AML K+  G G D + +R     +    G   G + F++V +  
Sbjct: 218 SVDDNMEDIMRLACSEAMLFKFGSGTGTDLSTIRSQREKLS-GGGTPSGPLSFMRVYDSI 276

Query: 435 AVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKR 492
           A  V  GGK R+ A    L+ WH D+ EF++ +                +N+  + +   
Sbjct: 277 AGVVKSGGKTRRAAKMQSLKVWHPDILEFIECKWAEEKKAHALIREGYDSNFNGEAYASV 336

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             QNA  ++        L D Y +          R              A  L  KM   
Sbjct: 337 CFQNANLSVR-------LTDDYMEAVRKNETFQTRWITDKPTTEPPSYVAKELLNKMAEC 389

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            +  G P + +    N      + G +++SN C+E        +   CNL SINL+    
Sbjct: 390 AWHCGDPGVQYDTTINKWHTCPNSGAINASNPCSEYMFL----DDTACNLASINLMKFVQ 445

Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD+++  +  RT     + ++D   +  E   +++H  R +GLG     S +    
Sbjct: 446 QDGSFDHERFRAACRTFFIAQEILVDHASYPTEPIARNSHKFRPLGLGYSNLGSVIMTAG 505

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY S  A  +       +   A   S ELA   G +  +  +                +
Sbjct: 506 LPYDSDAARGMCGSLTALLHGEANRTSAELASVVGTFDGYVENEAPMLRVMQMHRDACDQ 565

Query: 732 VRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN 788
           + D+    +   +R  WD + +  +  G RN+    +APT TI+ +    +  I+P    
Sbjct: 566 INDDGPAELKEAARELWDGVLEIGEKYGFRNAQATVLAPTGTISFMMDCDTTGIEPDIAL 625

Query: 789 LYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIH 845
           +  K    G    + +  V   LK+     + +   LKY D   +I     + D+   + 
Sbjct: 626 VKYKQLAGGGMLKIVNQTVKLGLKKLGYDADTIDEILKYVDANDTIEGAPGLQDEHLAVF 685

Query: 846 ATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGL 897
             AF+       I     I   +  Q ++  A S  + +    + + +   Y   W +GL
Sbjct: 686 DCAFKPANGVRSIGWRAHITMMAAAQPFLSGAISKTVNMPTDVTPQDIADAYFWGWELGL 745

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           K     R  S  S   +T        +A       +    +  P
Sbjct: 746 KAIAIYRDGSKQSQPLNTKSDEQKATDAAEAAKVETVEKIVYKP 789


>gi|291515281|emb|CBK64491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes shahii WAL 8301]
          Length = 850

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 149/698 (21%), Positives = 264/698 (37%), Gaps = 109/698 (15%)

Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFY 343
           ++ F  + L   +   +Y L  + G+  E  P+    R+A  +   E +        E +
Sbjct: 23  KKYFDGDDLAATVWVSKYALKDSFGNIYEKSPREMHERIASEIERIEQKYPNPLPKEEVF 82

Query: 344 NLLSSFHF---MCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYS 397
            LL  F +        T   +  +   LS+CF+       D   GIF   +E   L K  
Sbjct: 83  ALLDHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRR 142

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+GA+   L   H 
Sbjct: 143 GGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRGALMLSLSIKHP 201

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D E F+D + +TG    +    N +  I D FM+       +    P             
Sbjct: 202 DAERFIDAKVDTG----KVTGANVSIKIDDDFMRAALAGKKYHQQFP------------- 244

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +     YE+            I A  LW K++   +++  P + F D     S      
Sbjct: 245 IKSDNPKYEQD-----------IDARKLWEKIIHNAWKSAEPGVLFWDTIIRESIPDCYA 293

Query: 578 ----VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
               V  S+N C EI L         C L ++NLL++      A+ +F++DK    +  A
Sbjct: 294 DEGFVTVSTNPCGEIPLCPYDS----CRLLAMNLLSYVDNPFKADAKFNFDKFRDHVYKA 349

Query: 629 VRVLDNVIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQ 664
           + ++D++ID+    +E                        K ++     R  GLG+    
Sbjct: 350 MHMMDDIIDLELEKVEQIIGKIAADPEDLDVRRVELELWKKIREMARKGRRTGLGITAEG 409

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y + EA++ A E  + ++  A  ASV++A ERGA+  +  +          
Sbjct: 410 DMLAALGLRYGTQEAIDFAVEVQKCLALAAYGASVKMAAERGAFPVYDAAKEVNNPM--- 466

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            I  + E                 L + +  +G RN   + IAPT T + +   +  I+P
Sbjct: 467 -IARIREADP-------------ALYEEMTKVGRRNIAMLTIAPTGTTSLMSQTTSGIEP 512

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--------------S 830
            ++ +Y +     + + V++ +  E +  + + E  +    +                 S
Sbjct: 513 VFRTVYKRR-RKINPSDVDTHVDYEDETGEKFQEYNVYHHNFVKWLEASGYDTSKLATIS 571

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIY 889
              +           ATA +ID +  ++     QKW+D + S+ + L     + L   +Y
Sbjct: 572 DAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVADVY 631

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           R AW  G K     R      V          K    P
Sbjct: 632 RTAWECGCKGVTVYRDGCRDGVLLEKNSKSRKKCEEHP 669


>gi|32477697|ref|NP_870691.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica SH 1]
 gi|81658769|sp|Q7UI46|NRDJ_RHOBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|32448251|emb|CAD77768.1| ribonucleotide reductase [Rhodopirellula baltica SH 1]
          Length = 1040

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 140/708 (19%), Positives = 244/708 (34%), Gaps = 78/708 (11%)

Query: 296 LGLQILYDRYFL---HINGSRIEMPQAFFMRV---------AMGLALKETEKEKRAVEFY 343
           L   ++  +YF         R    +    RV         A G      + E+   +  
Sbjct: 98  LATNVVVSKYFYGDPKNTDERERSVRQLIHRVTRTISDWGLADGYFDTPEDGERFYRDLT 157

Query: 344 NLLSSFHFMCSTPTLFNSG-----------------------------TRHPQLSSCFLT 374
            L    H   ++P  FN G                               +PQ S+CF+ 
Sbjct: 158 WLSLHQHGAFNSPVWFNVGLHAQYDVEGDMCNWHWDRTENTTAQPDNPYEYPQGSACFIQ 217

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +V D++  I       AML K+  G G D + +R     +    G   G + F++V +  
Sbjct: 218 SVDDNMEDIMRLACSEAMLFKFGSGTGTDLSTIRSQREKLS-GGGTPSGPLSFMRVYDSI 276

Query: 435 AVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKR 492
           A  V  GGK R+ A    L+ WH D+ EF++ +                +N+  + +   
Sbjct: 277 AGVVKSGGKTRRAAKMQSLKVWHPDILEFIECKWAEEKKAHALIREGYDSNFNGEAYASV 336

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS----AVALWRK 548
             QNA  ++   D+  +           A    E    R              A  L  K
Sbjct: 337 CFQNANLSVRLTDDYME-----------AVRKNENFQTRWITDKPTTEPPSYVAKELLNK 385

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M    +  G P + +    N      + G +++SN C+E        +   CNL SINL+
Sbjct: 386 MAECAWHCGDPGVQYDTTINKWHTCPNSGAINASNPCSEYMFL----DDTACNLASINLM 441

Query: 609 AHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  FD+++  +  RT     + ++D   +  E   +++H  R +GLG     S +
Sbjct: 442 KFVQQDGSFDHERFRAACRTFFIAQEILVDHASYPTEPIARNSHKFRPLGLGYSNLGSVI 501

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               +PY S  A  +       +   A   S ELA   G +  +  +             
Sbjct: 502 MTAGLPYDSDAARGMCGSLTALLHGEANRTSAELASVVGTFDGYVENEAPMLRVMQMHRD 561

Query: 728 LLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
              ++ D+    +   +R  WD + +  +  G RN+    +APT TI+ +    +  I+P
Sbjct: 562 ACDQINDDGPAELKEAARELWDGVLEIGEKYGFRNAQATVLAPTGTISFMMDCDTTGIEP 621

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDLKYHDG--SIGNIERIPDDL 841
               +  K    G    + +  V   LK      + +   LKY D   +I     + D+ 
Sbjct: 622 DIALVKYKQLAGGGMLKIVNQTVKLGLKTLGYDADTIDEILKYVDANDTIEGAPGLQDEH 681

Query: 842 KKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAW 893
             +   AF+       I     I   +  Q ++  A S  + +    + + +   Y   W
Sbjct: 682 LAVFDCAFKPANGVRSIGWRAHITMMAAAQPFLSGAISKTVNMPTDVTPQDIADAYFWGW 741

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            +GLK     R  S  S   +T        +A       +    +  P
Sbjct: 742 ELGLKAIAIYRDGSKQSQPLNTKSDEQKATDAAEAAKVETVEKIVYKP 789


>gi|320103134|ref|YP_004178725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
 gi|319750416|gb|ADV62176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
          Length = 1048

 Score =  340 bits (871), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/701 (20%), Positives = 256/701 (36%), Gaps = 74/701 (10%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLA--------LKETEKEKRAVEFYNL 345
           L   ++  +YF   NG   R    +    RV   +A            E  +R  +    
Sbjct: 75  LSTNVVASKYFYGENGTAERERSVRQLIHRVTRTIADWGIADGYFATKEDGERFYDELTA 134

Query: 346 LSSFHF-MCSTPTLFNSGTRH-----------------------------PQLSSCFLTT 375
           L  F +   ++P  FN G  H                             PQ S+CF+ +
Sbjct: 135 LCLFQYGSFNSPVWFNVGLYHQYGIAGSSTNWRWDEETRTVVQTNTAYEFPQGSACFIQS 194

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DD+  I       AML KY  G G D + +R     +    G+  G + F+KV +  A
Sbjct: 195 VQDDMADIMRLATSEAMLFKYGSGTGTDLSTLRSSKEKL-AGGGRPSGPVSFMKVYDAIA 253

Query: 436 VAVNQGGK-RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV 493
             V  GGK R+ A    L+ WH D+ EF++ + K              AN+  + +   +
Sbjct: 254 SVVKSGGKTRRAAKMQTLKVWHPDIVEFIECKVKEERKAHALIRQGYDANFNGEAYSSVM 313

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            QNA  ++ + D      +  G+   + Y           + V+R   A  L  ++    
Sbjct: 314 FQNANLSVRATDAFLRAVEEDGE--WVTY----AVTTGKPMGVYR---ARDLMERIAQSA 364

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-A 612
           ++ G P + ++D         +   ++SSN C+E        + + CNL SINL+     
Sbjct: 365 WQCGDPGMQYEDTIQRWHTCPNTAPINSSNPCSEYMFI----DDSACNLASINLMKFRRE 420

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +  FD ++  +  R  +   + ++D   +  ++   ++H  R +GLG     S +     
Sbjct: 421 DGTFDVERFRAACRIYLTAQEILVDHVSYPTDRIALNSHRFRPLGLGYANLGSLIMASGR 480

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLL 729
            Y S     +A      +   A   S  +A   G +  F  +            D++  +
Sbjct: 481 AYDSEAGRALAAGITAVMHGEANLTSARIAAHLGPFEGFAVNREPMLKVMEMHRDAVERI 540

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN 788
                   +   +R  W E  +  +  G RNS    IAPT TI+ +    +  I+P    
Sbjct: 541 DPTLCPANVLEAARAVWKECLEMGREHGFRNSQVTVIAPTGTISFMMDCDTTGIEPDIAL 600

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  K+   G    + +  V    +   +D+  I  +  H  +   +E  PD LK  H   
Sbjct: 601 VKYKNLAGGGMLKIVNRTVPLALKTLGYDDEEIKRVLAHVDAHDTVEGAPD-LKPEHLDV 659

Query: 849 FE-----------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           F+           I  +  I+  +  Q ++  A S  + +  E + + +   Y  +W +G
Sbjct: 660 FDCAFKPSGGQRSIPYLGHIKMMAAVQPFLSGAISKTVNMPRESTVEDVMGAYLTSWKLG 719

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           LK     R  S  S   +T +            +    T S
Sbjct: 720 LKAIAIYRDGSKESQPLTTSRETSHNHKEEKGKEQGLDTVS 760


>gi|291296467|ref|YP_003507865.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
 gi|290471426|gb|ADD28845.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
          Length = 983

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/600 (22%), Positives = 239/600 (39%), Gaps = 88/600 (14%)

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
            +G    +     +  VPDD+ GI  A +  + LA        D++ +R  GA I G+ G
Sbjct: 195 RNGVMTVRERPGDVLVVPDDMRGIIEAAKSASSLAVKGQEPHVDFSSLRPEGAPIRGSGG 254

Query: 420 KSQGVIPFL-KVAND------------------------TAVAVNQGGKRKGAVCAYLET 454
            S G + FL ++ ++                            V QGG R+GA  A +  
Sbjct: 255 TSSGPVSFLVEIFDNFLEWANLGAEKAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIAI 314

Query: 455 WHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            H D+ +FL  +    +         N +  + + F + +  +  W +  P EV   +  
Sbjct: 315 DHPDLLDFLTAKDLDREASEGDISTFNISILVTEAFWQTLQADGLWAVE-PSEVPGKYYP 373

Query: 514 Y---GKEFEIAYENYER--QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           Y   G       +  ER     R       K+ A  LW ++    + TG P + F D  N
Sbjct: 374 YPVQGPYTGALPDLPERAQDGARPIPVYDGKVPAKWLWHEIAWHAWATGEPGLIFVDRIN 433

Query: 569 IRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             S  +++G    + S+N C EI L         C+LG+INL A+  N  F++ +    +
Sbjct: 434 ELSALKNLGPRYQIRSTNPCGEIPLTVGEP----CDLGAINLAAYVENGAFNFAEFRKDV 489

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTAVR LDNV+D+N   +E  + ++ T R +GLG+MG    L  + +PY+S     +  +
Sbjct: 490 RTAVRFLDNVLDVNVFALEDNRVASQTLRRLGLGVMGLADMLIKMGLPYSSEAGRRVVAQ 549

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M  +   AI+ S  L QERG +  ++ +        I                      
Sbjct: 550 VMNAMREEAIAESERLGQERGVFPVYEQNRAAFEALGIRPR------------------- 590

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                        RN   + +APT T + + GVS  I+P +     +        +++  
Sbjct: 591 -------------RNVAVLTVAPTGTTSMLMGVSSGIEPMFSPFMWRRIGGQYKALLHPL 637

Query: 806 LVNEL---------KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            V  +         ++   W+ EA+I  ++ + G++  +E IP  +  +   A ++ P+ 
Sbjct: 638 FVEMMEQFPATGPFEKDGAWNWEAIIEAIQANHGTVKGLEGIPAAIALVFEGAHDVPPLD 697

Query: 856 LIESASRRQKWID------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +      Q   D       + S  +   ++ + + ++  Y +A++ G K     R  S 
Sbjct: 698 HVRMQGVVQTAFDAEGYAANSLSKTINLPNQATVEDVEAAYTEAYMTGCKGITVYRDGSR 757



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 38/178 (21%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSF 349
           F+     I   +Y    +G         F RVA  +A  E    +K+  + +FY L++S 
Sbjct: 9   FDDHAQAIAKRQYMQPGDGDVF----GMFRRVATWVASPEKSEQDKQYWSEQFYRLMASK 64

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+       P    G+     + A++ K  GG G +  
Sbjct: 65  RFCPGGRVLAGAGTQHGNVLNCFVQGATEHDPSSFDGVMEVATKLALVTKVGGGNGVNLD 124

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           P      ++   +   +G +                   +G   AY+   H DVE+F+
Sbjct: 125 P------YVSRKHAGPRGTV-------------------RG--FAYIAADHADVEDFI 155


>gi|86158038|ref|YP_464823.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774549|gb|ABC81386.1| ribonucleoside diphosphate reductase, B12-dependent
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 925

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 124/618 (20%), Positives = 242/618 (39%), Gaps = 29/618 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN G   HPQ S+CF+  V D +  I  
Sbjct: 116 GYFTTEADAATFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     +    G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLS-GGGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DV EF++ +    D+ ++   +  A +     ++    ++ +   + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCK---ADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNAN 291

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             V  + D + +      E   +   R + +    I A  L R++    +  G P + F 
Sbjct: 292 HSV-RVTDAFMRAVLEDREW--KLTARTDGEALETIRARDLMRQITEAAWLCGDPGMQFD 348

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAS 623
              N   P  +   +++SN C+E        + + CNL S+NL+   +    FD +    
Sbjct: 349 TTINAWHPCPNTDRINASNPCSEYMFL----DDSACNLASLNLMHFRSIEGGFDVESFKR 404

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +   + ++    +      K++  +R +GLG     + L    +PY S      A
Sbjct: 405 AVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYANLGALLMASGLPYDSDGGRACA 464

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWD-QGVF--PIDSIGLLAEVRDELAMNR 740
                 ++  A + S  +A   G ++ ++ +     GV       + L+     E  +  
Sbjct: 465 AAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVIRKHAQHVDLVDPTLVEPGLLS 524

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            +R  W +  ++    G RN     +APT TI  +    +  I+P    + Y K    G 
Sbjct: 525 AARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGM 584

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAFE------ 850
             +VN+ +   L++     E + S L++ D   +I     +  +   +   AF+      
Sbjct: 585 LKIVNNTVPLALQKLGYSSEEITSVLQFIDEVETIEGAPGLRPEHAPVFDCAFKARNGTR 644

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I  M  I      Q ++  A S  + +    + + ++  Y ++W +GLK     R    
Sbjct: 645 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIENAYLESWKLGLKAVAIYRDGCK 704

Query: 909 TSVEKSTLKGVDGKLNAV 926
            S   +T K  + + +  
Sbjct: 705 RSQPLNTGKEQEERKDVA 722


>gi|156312488|ref|XP_001617836.1| hypothetical protein NEMVEDRAFT_v1g8281 [Nematostella vectensis]
 gi|156196039|gb|EDO25736.1| predicted protein [Nematostella vectensis]
          Length = 294

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 186/293 (63%), Positives = 239/293 (81%), Gaps = 2/293 (0%)

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLCTEITLN++  E AVCNLGS+NL+ H  NN+ +  KL  TI+TA+R+LDNV+DIN + 
Sbjct: 2   NLCTEITLNTNEREIAVCNLGSVNLVNHIENNEINVAKLEKTIKTAMRMLDNVVDINFYP 61

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +EKAK SN  HR +GLG+MGFQ  LH+L IPYAS EAVE AD+SME IS++A SAS +LA
Sbjct: 62  VEKAKNSNLAHRPVGLGMMGFQDCLHMLRIPYASKEAVEFADKSMELISYYAFSASSKLA 121

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRN 760
           +E+G YSS+K SLWDQG+ P+DS+ LLA+ R    L ++ + +L WDEL+  +K  GMRN
Sbjct: 122 KEKGTYSSYKDSLWDQGILPLDSLKLLAKSRGAQYLDVDESKKLDWDELRSHIKEHGMRN 181

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           SNC+AIAPTATIANI G+S SI+P+YQN++VKSN+SG+FTV+N FL+N+LK   LWDE M
Sbjct: 182 SNCLAIAPTATIANIVGISASIEPTYQNIFVKSNLSGEFTVINDFLINDLKNEGLWDEVM 241

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           +SD+KY DGS+  I+RIPD LK+++ATAFE+DP WL+E+ASRRQKWIDQAQSL
Sbjct: 242 LSDIKYFDGSLQQIDRIPDSLKQLYATAFEMDPKWLVEAASRRQKWIDQAQSL 294


>gi|57790964|ref|YP_182368.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
 gi|5918980|gb|AAD56211.1|AF168792_12 ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 785

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 174/701 (24%), Positives = 278/701 (39%), Gaps = 93/701 (13%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV---------------E 341
             Q     Y   +   ++E    FF R++   A       + A                 
Sbjct: 135 SAQKYESLYLGKLGNGKLESMGQFFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTR 194

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENAMLAKYSGG 399
           F+  LSS   +  TP +   GT     +SCFL      +         +E   +    GG
Sbjct: 195 FFTCLSSQLIVPPTPVMLFGGTSLAAYASCFLIDSSGRNTERRSMSLPEEVIPIMNNRGG 254

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G              G      G + FLK  +    A N   KR   +C Y E WH D 
Sbjct: 255 IGISL--------PCLGAPQNESGCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDT 306

Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKE 517
            + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  + WTLF       L +L+G+E
Sbjct: 307 LKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPGSKWTLFD-HRGEHLSNLFGEE 365

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  YE  ER+     + +  ++ +             TG P++ FKD  N         
Sbjct: 366 FEKEYERLERKMLEWPLSLSPRLCSDN------QKCSSTGTPFVVFKDAFNRHYFYNMQH 419

Query: 578 V-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIR 626
             +  SNLCTEI   + S+   VCNL SINL A   N +          FDY+ L  T R
Sbjct: 420 RALKCSNLCTEIAHMADSDTVGVCNLISINLAAMVKNARAGLAGKPGSFFDYELLRETAR 479

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA    + +I +     ++A+  NH  R++G+G+ G  +A  +      S E  E  D  
Sbjct: 480 TATIFANVMISLGNMPSQRAQSGNHRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDTV 539

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E ++      S  L +     +  ++ S +  G   ID                  +  
Sbjct: 540 FELLALETTGISCRLCELGLPPFDKYRESYYALGWLHIDGWPNTK---------LRYKNE 590

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ R+   G+ N   +A+ PTA+ + I  VS+   P + N++ K + +G+    +  
Sbjct: 591 WDSLRHRIDPSGLYNCQTVALMPTASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPHLA 650

Query: 806 LVNELKQRDLWD---EAMISDLKYHDGSIG---NIERIPDDLKKIHATAFEIDPMWLIES 859
           L++ + +        +A +++LK H  S+            +     TAFE+D   L+  
Sbjct: 651 LMDAIDELYSDQGEKQAFLANLKKHQWSVRAALGSAWSESHVLAKFQTAFELDQEKLLYL 710

Query: 860 ASRRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
           ++RR  +ID +QS  LY+ E      S  ++  + + A+  GLKT  YY + R  T+   
Sbjct: 711 SARRAPFIDHSQSNTLYITEDVDGTLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN--- 767

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                  +     SC     C  CQ
Sbjct: 768 -----------------------NGVFVGSCGDSLICSACQ 785


>gi|89099226|ref|ZP_01172104.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89086072|gb|EAR65195.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 849

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 177/739 (23%), Positives = 294/739 (39%), Gaps = 133/739 (17%)

Query: 312 SRIE-MPQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG--TRH 365
             +E   +    R A GLA  E  +EKR   F   Y+ L S +F+ +   L+ +G  T  
Sbjct: 122 KPLEIYYEQIAKRNATGLAAAEATEEKRKEWFEKFYHELVSLNFIPAGRVLYGAGADTDV 181

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 182 TYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 241

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDDRR 474
            +L         V QGG R+GA    L  WH D+ EF+            L +NT D+  
Sbjct: 242 SWLDDIAKLTHLVEQGGSRRGAQMIMLTDWHPDIIEFIISKMQNPRILRFLLENTQDETI 301

Query: 475 RTH---------------DMNTAN----WIPDL--FMKRVTQNAG--------WTLFSPD 505
           + +               +M         IP L  F +++ ++A         +T+ +P+
Sbjct: 302 KRYASEKLKFTPLTEQETNMYQGIINYKQIPGLGGFSEKIIKDAENKLAAGGNYTVHNPE 361

Query: 506 EVSDLH--------------------------DLYGKEFEIAY-ENYERQADRGEIKV-- 536
            ++  +                          + Y  E    Y E + +  D  E +   
Sbjct: 362 FLTGANISVCLTKDFMDAVEKDAEYELRFPDVESYDAETMKIYNEEWHKIGDVREWEKLG 421

Query: 537 -----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
                +RKI A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L
Sbjct: 422 HKVRTYRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQPL 481

Query: 591 NSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +VCNL ++NL  +A   N   D++KLA T+   VR+ DNVID   + +E+ KK
Sbjct: 482 AP----YSVCNLAAVNLAEMADKENKTVDFEKLARTVEVGVRMQDNVIDATPYFLEENKK 537

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S +  E+ D+  E I+  A  ASVELA E+G++
Sbjct: 538 QALGERRVGLGVMGLHDLLIYCETEYGSEKGNELIDKVFETIAVTAYKASVELAGEKGSF 597

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G+          +    + +R         +   +++++ +   G+RNS+ + +AP
Sbjct: 598 PFLTGA----------TDEETSRLRQNFTEAGFMQKMPEDVRQSILEKGIRNSHLLTVAP 647

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  V + +V E   R               
Sbjct: 648 TGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR--------------- 692

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
               N +  P++L +   +A E+ P    +     Q+WID + S  +   +  S ++++ 
Sbjct: 693 ----NPDADPENLPEWFISAMELSPEAHADVQCVIQRWIDSSISKTVNAPKGYSVEQVEG 748

Query: 888 IYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA-----------VPVTDPNSS 934
           +Y + +  G K  T Y   SR +  +   TLK  +   +            V + D  S 
Sbjct: 749 VYERLYRGGAKGGTVYVDGSRDSQVL---TLKAEENTFDEEETKEEKPKQRVVLVDTISD 805

Query: 935 THSLGIPSSCTSDTECEVC 953
             S  +         C VC
Sbjct: 806 LRSTDVTIGSEVGNTCPVC 824


>gi|283778372|ref|YP_003369127.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
 gi|283436825|gb|ADB15267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
          Length = 1041

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 145/690 (21%), Positives = 256/690 (37%), Gaps = 85/690 (12%)

Query: 296 LGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLA---------LKETEKEKRAVEFYN 344
           L   ++  +YF   NG   R    +    RV   +A             + E+   E   
Sbjct: 80  LATNVIVSKYFYGENGTAERERSVKQLIHRVTRTIADWGIEDGYFASAEDGEQFYRELTW 139

Query: 345 LLSSFHFMCSTPTLFNSG-----------------------------TRHPQLSSCFLTT 375
           L  + H   ++P  FN G                               +PQ S+CF+ +
Sbjct: 140 LCLNQHGAFNSPVWFNVGLFNQYGVTGAKCNWRWNPETGTTEQPENPYEYPQGSACFIQS 199

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I       AML K+  G G D + +R     +    GK  G + F++V +  A
Sbjct: 200 VDDNMEAIMRLATSEAMLFKFGSGTGTDLSTLRSHREKLS-GGGKPSGPLSFMRVYDQIA 258

Query: 436 VAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-----NTANWIPDLF 489
             V  GGK R+ A    L+ WH D+ EF++ +     + R+ H +       AN+  + +
Sbjct: 259 AVVKSGGKTRRAAKMQSLKVWHPDILEFVECKWK---EERKAHVLIEKGGYEANFNGEAY 315

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS---AVALW 546
              + QNA  ++   DE           F  A+E  E+ A        ++     A  L 
Sbjct: 316 SSILFQNANLSVRLTDE-----------FMQAHEKNEKWATHWITDASKEGPVYEARWLL 364

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +M    ++ G P + +    N      + G +++SN C+E        +   CNL SIN
Sbjct: 365 NRMAECAWQCGDPGVQYDTTINKWHTCPNSGRINASNPCSEYMFL----DDTACNLSSIN 420

Query: 607 LLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L+     +  F+ D+  +  R      + ++D   +  E+  +++H  R +GLG     S
Sbjct: 421 LMKFREADGSFNVDRFKTACRLFFIAQEILVDHASYPTEQIARNSHAFRPLGLGYSNLGS 480

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW---DQGVFP 722
            +    +PY S  A  +       +   A  AS E+A   G +  ++ +           
Sbjct: 481 LIMSNGLPYDSEAAYGLCGSVTALLHGAANLASAEMAAVVGPFEGYEANREPFLRVMQMH 540

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781
            D++  +        +   +R  WD++    +  G RN+    +APT TI+ +    +  
Sbjct: 541 RDAVEDINPA-GPADLQEAARATWDQVLALGRRTGFRNAQATVLAPTGTISFMMDCDTTG 599

Query: 782 IDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIP 838
           I+P    +  K    G     VN  +   L +    D  +   LKY   + +I     + 
Sbjct: 600 IEPDIALVKYKQLAGGGMLKIVNGTVPMALGKLGYDDPQIKGILKYVNENDTIEGAPELA 659

Query: 839 DDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYR 890
           D+   +   AF+       I+    I   +  Q ++  A S  + +    +   +   Y 
Sbjct: 660 DEHLAVFDCAFKPANGVRSINWRAHIRMMAAAQPFLSGAISKTVNMPTDVTPADIGDAYT 719

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             W +GLK     R  S  S   +T     
Sbjct: 720 WGWQLGLKALAIYRDGSKQSQPLNTKNDAS 749


>gi|146329736|ref|YP_001209517.1| ribonucleotide-diphosphate reductase subunit alpha [Dichelobacter
           nodosus VCS1703A]
 gi|146233206|gb|ABQ14184.1| ribonucleotide reductase, alpha subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 573

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/621 (25%), Positives = 259/621 (41%), Gaps = 112/621 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L  +G+  E  +     VA   A +          F++ L+  ++  S+P   N
Sbjct: 40  LQRGYLL--DGTSAE--KRMKEIVAR--AAEILPFADFEQRFFHYLARGYYSFSSPIWSN 93

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D +Y I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 94  FGLARGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGGGTSAYFGAIRPRGSDIRD-NGK 152

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D+EE+LD+      +      M 
Sbjct: 153 SDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHGDIEEWLDIHT----EGNPIQLMY 208

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               I   ++  +                                               
Sbjct: 209 YGVCISHQWLAEMKAGDS------------------------------------------ 226

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEET 597
               +W K+L    ETG P++ FKD  N   P  +      +++SNLCTEI L +S EE+
Sbjct: 227 EKRRIWAKVLQRKSETGIPYLFFKDNANAGRPDVYKDLNLPIYASNLCTEIMLPASEEES 286

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNH 651
            VC L S+NLL +      +  K    +   V  LD V+            +E+A++   
Sbjct: 287 FVCCLSSMNLLYY------EEWKNTDAVELLVYFLDAVMTEFIEKSADLPFLERARRFAM 340

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L   H+P+ S  A++  +E  + +    +SAS  LA+  G     
Sbjct: 341 RHRALGLGVLGWHSYLQSQHLPFDSLAAMQKNNEIFQLLQRKTLSASRTLAEHLGEPEIL 400

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +G                                           G RN+  M++APT +
Sbjct: 401 RG------------------------------------------YGRRNTTLMSVAPTKS 418

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N +VK       T  N FLV  L ++ L  E     +  +DGS
Sbjct: 419 SSFILGSVSPSVEPLKSNYHVKDLAKIKTTYKNPFLVALLAEKGLDTETTWESILLNDGS 478

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++  + D+ K I  T  EI+ + +I+ A++RQK+IDQ QS+NL +   +  + ++ +Y
Sbjct: 479 VQHLPDLSDEEKAIFKTFSEINQLSIIQQAAQRQKYIDQGQSINLMIHPDTPTRDINQLY 538

Query: 890 RQAWLMGLKTTYYLRSRSATS 910
             A  +G+K+ YY  S SA  
Sbjct: 539 LTAAELGVKSIYYQHSMSAAQ 559


>gi|297622358|ref|YP_003703792.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
 gi|297163538|gb|ADI13249.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
          Length = 554

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 157/584 (26%), Positives = 247/584 (42%), Gaps = 106/584 (18%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A  F++ L+   +  S+P   N G       SCF + VPD + GI GA  E  +++KY G
Sbjct: 53  AERFFDYLARGFYSLSSPIWANFGLSRGLPISCFGSYVPDSMAGILGAAAEVGIMSKYGG 112

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G    +  +R  GA I   NG S+G + FL++ +       QG  R+G+  AYL   H D
Sbjct: 113 GTSAYFGDLRPRGAPIRD-NGFSEGAVNFLRLFDTLIDVTKQGATRRGSFAAYLPIDHPD 171

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           VEEFL +R     D     ++     + D +++ +                         
Sbjct: 172 VEEFLAIR----SDGNPIQNLFFGVAVSDAWLEAMRAGDA-------------------- 207

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                                     +W K+L    E G P++ F D     +P+ +   
Sbjct: 208 ----------------------DKRRVWAKVLQKRTEVGLPYVLFTDNATRGAPEVYRDR 245

Query: 579 ---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              V SSNLCTEI L  + +E+ VC+L S+NL  +      D  +    +R  V  LD V
Sbjct: 246 GLVVRSSNLCTEIMLPVAEDESFVCDLASMNLATY------DAWRATDAVRLLVFFLDAV 299

Query: 636 IDINCH------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           +             E+A++    HRA+G+G++G+ S L    +P+ S +A  +  +    
Sbjct: 300 MTEFIDKSASLPFFERARRFAVRHRALGVGVVGYHSLLQARRVPFGSLQAALLNRQIFRE 359

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A  AS ELA+  G  +  +G+                                   
Sbjct: 360 LREAADDASAELARRYGEPALCEGT----------------------------------- 384

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+  +A+APT + A I G VS S++P   N YV+       T  N  L  
Sbjct: 385 -------GRRNTTLLAVAPTTSSAFILGGVSPSVEPLRSNYYVRDLAKAVVTYRNPALRE 437

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L++R     A+   +  HDGS+ +++ + D+ K + AT  EI P  +I  A+ RQ +ID
Sbjct: 438 VLRERGHDTPAVWRSILAHDGSVQHLDCLSDEEKGVFATFSEISPRDIIVQAAGRQAFID 497

Query: 869 QAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           Q QSLNL +   +  + L+ +  +A   GLK+ YY  + SA   
Sbjct: 498 QGQSLNLMIHPETPARDLNALVLEAHARGLKSLYYQHAISAAQA 541


>gi|9628064|ref|NP_042658.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
 gi|82013697|sp|Q66663|RIR1_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|695234|gb|AAC13849.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
          Length = 799

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 187/824 (22%), Positives = 308/824 (37%), Gaps = 112/824 (13%)

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREV---------LTTVYKKPQKATHHEMQCLYPEYFC 257
             + E+E +   +  R L++ L+               +Y              Y   F 
Sbjct: 12  VYMAEREED---LALRKLIDTLKISAGWDLEANRMAGRLYHFVMGRRAPVDTRAYVTTFG 68

Query: 258 RYIEEGVKARLLHESMMDFDLVY-LANDLKYERDFAFEYLGLQILYDRYFLHIN-----G 311
             +E+GV   L   +    DL     N  +YER  +   L  + +YD Y L        G
Sbjct: 69  DKLEKGVHRFLWDNARDIDDLCKDFQNGPEYERLISRGMLSAKRMYDTYVLRTEEGGGEG 128

Query: 312 SRIEMPQAFFMRVAM-----GLALKETEKEKRAVE---------------FYNLLSSFHF 351
           +  E     + R+A        A     K    VE               F+ +L+S   
Sbjct: 129 AVYESALQMYARMAAFFTCQCFAYPSLRKTVSEVEGGSGRMESGLDFFAYFFKILASQLV 188

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWTPVRG 409
            C+TP + ++G R   L+SCF+           +    ++ + L     G+G + T    
Sbjct: 189 SCATPVMRSAGLRQSYLASCFIMNPDMSTEDKTLSAVFRDLSPLLCSKSGVGMNLTNFSS 248

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G ++             L++ N      N    R  +V AY+E WH  +EEFL  +   
Sbjct: 249 GGKNVQ----------SCLRLINSQVEFCNDKNLRPVSVAAYMELWHEQIEEFLAAKLPE 298

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             +  R   +     +P LF +   QN    W LFSP     L  LYG +F+   E Y R
Sbjct: 299 NPE--RCQSIFQGVCVPGLFFRLYEQNPDSQWHLFSPKVGGHLAGLYGDKFD---EEYAR 353

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
               G       + A +L   +++ + +TG P+I  KD  N     +  G  +  +NLC 
Sbjct: 354 LVRHGLY--SSSLPAKSLMFALISAIIKTGSPYILSKDAINRHHWFETQGNAISYANLCA 411

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-------------------------NNQFDYDKL 621
           E+      E T+ CNL ++ L A                            + +F +D L
Sbjct: 412 EVVQQPH-EFTSTCNLANVCLPACLRARGEGEGAGAAGEGEGADRLSPLTPDLEFCFDTL 470

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + +R AV +++  I          +      R+ G+G+ G       L   Y   E+  
Sbjct: 471 RAAVRAAVYMINASILGGVCPTPGVRVM-QAERSAGIGVQGLADVFAKLGRGYMDAESAL 529

Query: 682 IADESMEFISFHAISASVELAQERGAYS--SFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +     E + + A+ AS +L    GA    ++K S   +G F  +S G+      +    
Sbjct: 530 LDARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSKLSRGEFHWESWGV------QYDSL 583

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              R  W+EL++ V   G  NS  +A+ PTA  + + G+S+S  P Y N+  K +   + 
Sbjct: 584 FIERQLWEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFYANVSSKVSNKEEV 643

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              N   +  +   D      +  LKYH G +  +        +   TAF+  P   I  
Sbjct: 644 MKPNITFLERVSPSD------VPLLKYHGGDVSKLPPPLAAKYRNFLTAFDYSPEDQIRR 697

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGK---KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           A+ R  ++DQ+QS + +L E + K    +  +      +GLKT  YY R +  TS+  + 
Sbjct: 698 AAARSPFVDQSQSFSFFLKEANVKSASYVKNLILLGHGLGLKTIMYYCRIQKQTSL--TA 755

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSS-----CTSDTECEVCQ 954
           L+ +    +                P S     C S   C  CQ
Sbjct: 756 LECLQCTESPDSGDGVGGYKGGDEEPRSPEHAQCESPDRCLSCQ 799


>gi|195941045|ref|ZP_03086427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
          Length = 552

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 138/527 (26%), Positives = 226/527 (42%), Gaps = 39/527 (7%)

Query: 205 SSRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++  +I+  P+Y  + A   L            RE +   +    +           E  
Sbjct: 5   TAERVIQATPDYHALNAMLNLYDREGRIQFDKDREAVDAFFAAHVRPNSVVFGSQ-QERL 63

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI 314
              ++EG     +     D   V    +  +   F F  +LG    Y  Y L   +G R 
Sbjct: 64  DWLVKEGYYEERVLT-RYDRAFVVALFERAHVSGFRFQTFLGAWKYYTSYTLKTFDGKRY 122

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF 372
            E  +   + VA+ LA  +   E  A      + S  F  +TPT  N G  +  +L SCF
Sbjct: 123 LESFEDRTVMVALTLAQGD---EALAERLTEEILSGRFQPATPTFLNCGKAQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K 
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +N    LFSP ++  ++     +  I+ E Y+       I+    I+A   ++++  +
Sbjct: 300 AKENTEMALFSPYDIERIYGKAFGDVAIS-ELYDELVADDRIRKN-TINARDFFQRLAEI 357

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVC 600
            FE+G+P+I ++D  N  +     G ++ SNLC+EI   +S+                 C
Sbjct: 358 QFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASSYDENLDYADVGNDISC 415

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+      +  D      T+ TA+R L  V D++   ++   +  N    AIGLG
Sbjct: 416 NLGSLNIA-----HTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLG 470

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            M     L    I Y SPE ++  +     I++HA+  S+ LA+ER 
Sbjct: 471 QMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMRLARERN 517


>gi|9631251|ref|NP_048032.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019287|gb|AAC95585.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 767

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 188/818 (22%), Positives = 319/818 (38%), Gaps = 115/818 (14%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I S   +++    + +            E+   ++ K    +  E    Y   F  
Sbjct: 3   QEIIISSLIDMLKVSAGWDREAN---------EISGRLFHKLMDVSSTETISQYLLLFGH 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF------EYLGLQILYDRYFLH---I 309
            +E       + E + ++++      L+Y     F        L  +  YD Y L     
Sbjct: 54  LLE-----PHIFEFIQNYEVEIDEVCLEYRTSNNFMCLRSCGILPAKRFYDTYVLPPKPG 108

Query: 310 NGSRIEMPQAFFMRVAMGLA------------LKETEKEKRAVE----------FYNLLS 347
           +  R E    FF R+A   A            L   +K    VE          FY ++S
Sbjct: 109 SNGRYESIPHFFARIAAYCAWNCIMCEPLKDTLVHIQKRDWNVELKTNIQIFKYFYKVIS 168

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           S    C+TP + ++G     LSSCF+   T+  +   I     E A L     G+G D T
Sbjct: 169 SQLVCCATPVMRSAGIAGENLSSCFIVAPTLDTEKSTISSIFGELAPLLASRSGVGIDVT 228

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                G +IH            LK+ N      N    R  +V  Y+E WH  + EFL  
Sbjct: 229 KFSFGGKNIH----------SCLKLINAQVDFFNDKSVRPVSVATYIEMWHCQIHEFLSA 278

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVT--QNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +     D  R + +     IP LF K      NA W LF P +  +L  LYG EF+   E
Sbjct: 279 KLPENPD--RCNSIFQGVCIPSLFFKMYETDPNAQWYLFDPQDAPNLTKLYGSEFD---E 333

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSS 582
            Y R     +    + +S  +L   ++  + +TG P++  K+  N     +  G  ++ S
Sbjct: 334 EYLRLVSTKKY--KQSVSLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCS 391

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRVL 632
           NLC EI        T+ CNL +I L      ++F          D+ KL   ++ AV ++
Sbjct: 392 NLCAEIVQQPKQ-YTSTCNLANICLPKCLNGSEFPYTCSNKAQFDFLKLEYAVQAAVFII 450

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +  I     T   A       R++G+G  G       +   Y   E+  +  +  E + +
Sbjct: 451 NACILAPSPT--SAATVGQRERSMGIGCQGLADVFSEMGYGYLDLESECLDRDIFETMYY 508

Query: 693 HAISASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            A+  S E+    +   ++ F+ S    G+F   +   + +              W  L+
Sbjct: 509 TAVKTSSEICSIGKGQPFAGFRKSKLAHGIFHWATWDAMPQKVP--------MKQWIHLQ 560

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +K  G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +
Sbjct: 561 DNIKKFGVYNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMRPNLTFLKNV 620

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWI 867
           K +DL        ++++ G +     +P++L   +    TAF+  P   +  AS R  ++
Sbjct: 621 KPQDLCT------VRFYGGDVS---MMPEELSARYKHFLTAFDYCPKAQMRRASVRAPYV 671

Query: 868 DQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK-------STL 916
           DQ+QSL L+L E    S K +  +    + +GLKT  YY R +  T + +       +T+
Sbjct: 672 DQSQSLTLFLTEDNIQSAKYIKDLLLLGFNLGLKTIMYYCRVKKTTKLLQLECLKPDNTI 731

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           K  DG + +  V     S  +  +       +EC  CQ
Sbjct: 732 KKDDGIVVSELVEKLPKSHKTEDVCQ--LGQSECISCQ 767


>gi|327198237|ref|YP_004306813.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|297591763|dbj|BAJ09183.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|323145835|gb|ADX32076.1| hypothetical protein nrdE [Pseudomonas phage P3_CHA]
 gi|323146021|gb|ADX32261.1| hypothetical protein nrdE [Pseudomonas phage PAK_P3]
          Length = 618

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 187/701 (26%), Positives = 284/701 (40%), Gaps = 127/701 (18%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y  D      GL +L    F          PQ    R A+     + +    A   Y 
Sbjct: 13  IDYSLDRTIPEQGLAMLTSDGFYKKEHET--SPQQTLSRAAVSYCFGDYD---FAQRMYG 67

Query: 345 LLSSFHFMCSTPTLFNS-----------------------GTRHPQLSSCFLTTVPDDLY 381
             S    + ++P   N+                               SCFL+ + D   
Sbjct: 68  YFSRQWAVPASPVQTNALDIEWPNFTEEQFDEAGDWLQENIDTTGMPISCFLSMIADSRK 127

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           G+  A  E   L+   GG+        G+ A I   +  S GVI      +    A  Q 
Sbjct: 128 GLTTASGEAKELSMAGGGV--------GVYAGIRAPDELSTGVIEHAGDYDVMCRAYRQT 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWT 500
             R+G++  YL+  H +   FL +R   G D + +  ++N    IPD FM+ V +   W 
Sbjct: 180 RTRRGSMAMYLDVAHPEFPVFLQMRNPVGGDPKLKRFNLNNGANIPDAFMEAVIKGEDWE 239

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
              P                                 RK+ A  LW +ML +  +TG P+
Sbjct: 240 FVDPKHGK---------------------------TGRKVPARELWEEMLQVRKDTGEPF 272

Query: 561 ITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           + F D  N          +  V  SNLC+EITL +S + TAVC L S+NL  +    + D
Sbjct: 273 MLFVDTVNRNLPECITHPLYRVRQSNLCSEITLYTSFKRTAVCCLSSVNLGTY-DEWKDD 331

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS- 676
              +A  +R    VL+  I +   ++ +A  S    RAIGLG MGF + L    IP+ S 
Sbjct: 332 PLFIADMVRFLDNVLEFFIRLAPPSMHRAVHSASKERAIGLGTMGFHTLLQQRMIPFESG 391

Query: 677 --PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
                 ++  +  + I   A+ AS+EL + RG     +GS                    
Sbjct: 392 GMGGMQQLNYQVYKQIKEQAVQASLELGRSRGEAPDCQGS-------------------- 431

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                                 G RNS+ +AIAP A  +++  VS S +P   N +    
Sbjct: 432 ----------------------GRRNSHLLAIAPNANSSSLVNVSPSTEPWAGNCFNAQG 469

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +G F + N +L  EL++  L  +     +   +GS  +IE + D++K +  T  EI PM
Sbjct: 470 RAGSFLIKNEYLRRELEKVGLDTKETWRSINDAEGSCQHIEGLSDEVKAVFKTIREISPM 529

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           WLIE+A+ RQ +I Q+QS+NLY+    + +++  I+  AW  GLK+ YY RS++A S++ 
Sbjct: 530 WLIEAAAGRQPFICQSQSVNLYVHPDITLQEMSDIHIYAWHKGLKSLYYCRSKAAKSMKV 589

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            T  G    LNA+PV      T SL        +  C  CQ
Sbjct: 590 GT--GGAEPLNALPV----RYTISL-------DEDTCLSCQ 617


>gi|86742189|ref|YP_482589.1| ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
            CcI3]
 gi|86569051|gb|ABD12860.1| Ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
            CcI3]
          Length = 1281

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 115/597 (19%), Positives = 220/597 (36%), Gaps = 38/597 (6%)

Query: 346  LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +     +    ++G R   + +CF+ +V D +  I    +E  ++ K   G G + +
Sbjct: 428  MPVYDIQTDSGEYLSAGLR---VHNCFILSVDDTMESILNWYREEGLIFKGGSGAGLNLS 484

Query: 406  PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD 464
             +R     +  + G + G + F++ A+ +A  +  G   R+ A    L+  H D+ EF++
Sbjct: 485  RIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVE 543

Query: 465  LRKNTGDDRRRTHDMNTANWIPDLFMKRV----TQNAGWTLFSPDEVSDLHDLYGKEFEI 520
             +    D  R   D   A +  DL  + +     QNA  ++   DE      + G  F++
Sbjct: 544  TKAREEDKIRALRD---AGFDMDLGGRDIASVQYQNANNSVRVTDEFMRAV-VDGGGFDL 599

Query: 521  AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                      R + +V   + A  L+  +    +    P I +    N        G + 
Sbjct: 600  R--------ARLDGRVLETVDARGLFHTIAEAAWACADPGIQYDGTINDWHTCPESGRIS 651

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            +SN C+E     +S     CNL S+NLL     +  FD +   + +   +  +D  I   
Sbjct: 652  ASNPCSEYVHLDNSS----CNLASLNLLKFLRPDRSFDAEAFVAAVELIITAMDISICFA 707

Query: 640  CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                 +  + +  +R +G+G     + L      Y S     +A      ++  A   S 
Sbjct: 708  DFPTPEITRVSRAYRQLGIGYANLGALLMASARAYDSDGGRALAASITSLMTATAYRRSA 767

Query: 700  ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKT 755
            ELA   GAY  F  +                 VR    ++  +   +   W   +   + 
Sbjct: 768  ELAGIVGAYDGFARNADAHRRVMRKHAAANDAVRSVHAEDSRILAVASREWARAQTVGEK 827

Query: 756  IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G RN+    +APT TI       +  I+P    + +K  + G    + +  V    Q  
Sbjct: 828  HGWRNAQASLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGASMRIVNQTVPAALQAL 887

Query: 815  LWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWID 868
             + E  I  +  +    G++   P    +  ++   A     I PM  +   +  Q ++ 
Sbjct: 888  GYPEETIEAIVEYIAEYGHVIDAPGLRPEHYEVFDCAIGERAISPMGHVRMMAAVQPFLS 947

Query: 869  QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
             A S  + +    +  +++ IY + W +GLK     R         + +KG      
Sbjct: 948  GAISKTVNMPSTATVAEVEQIYLEGWRLGLKALAIYRDNCKVGQPLTDVKGAKQAAE 1004


>gi|254255489|ref|ZP_04948805.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124901226|gb|EAY71976.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 636

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 144/625 (23%), Positives = 242/625 (38%), Gaps = 82/625 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCSTPTL 358
           +  DRY      SR+      F RVA  L+L E    +  +E   L +     + +   L
Sbjct: 49  VFADRYARPGETSRV----DIFRRVARALSLAEPAAGRTRIEHAFLANLQRGAIGAGRIL 104

Query: 359 FNSGT-RHPQLSSCFLTT--------VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            N+G      + +CF+          +      +  AL +        GG+G D++PV  
Sbjct: 105 ANAGAGTGGTMVNCFVHPLAIPPGASIETVDAVLAAALDDARRTLLMGGGIGYDFSPVPP 164

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A+         GV   +   +     +   G R+GA  A L   H D+  F+  +   
Sbjct: 165 ESAY-DARRAAESGVCAAIDRFDAMCGTLPFSGPRRGAQMAVLRCDHPDLAAFVAAKNR- 222

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  I D FM+ V  +  W L  P             +  +  + ER  
Sbjct: 223 ---RLRWTTFNVSVGITDAFMEAVAYDRPWALVHPS----------PRYAASAASSERAD 269

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            +    +   +SA ALW +++T   ++  P + F D  N  +P +    + ++N C E  
Sbjct: 270 GQHLHAI---VSARALWHRIVTAARDSAEPGLLFLDTINDANPLRDHERIDATNPCGEQP 326

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L         C LG I+L               FD+D LA  +R  VR+LDNV+D+    
Sbjct: 327 LPPYGS----CVLGPIDLSRFVRRPFGCGGEPAFDFDTLADAVRIQVRMLDNVLDLTNWP 382

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   ++     R IG+G+ G   AL +L + Y S +A  +A   +  +  HA SAS  LA
Sbjct: 383 LAAHEREARRTRRIGVGVTGLGDALTMLRLRYDSADARAVARSIVLTMREHAFSASARLA 442

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERGA+ +F+ S +  G      + L                   ++   +   G+RNS+
Sbjct: 443 AERGAFPAFEPSAYLAGPAHRMPLPL-------------------KVHHAIARHGLRNSH 483

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ AP  +++       S  I+P+   +  ++  + D   V +F V     R   +   
Sbjct: 484 LLSFAPAGSVSLAFCDNCSNGIEPALGWVQHRTVRTADG-NVRAFRVENHAYRLFREL-- 540

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDE 879
                      G+   +PD      ATA +I P   +   +  Q  +D   S  +    +
Sbjct: 541 ----------HGDGVGLPD----YFATAADIAPADHVAMLAALQPCVDAGISKTVAMRRQ 586

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            S  ++D ++  AW   LK     R
Sbjct: 587 CSLSQVDELFFLAWRERLKGITIFR 611


>gi|257373021|ref|YP_003175795.1| ribonucleotide-diphosphate reductase subunit alpha [Halomicrobium
           mukohataei DSM 12286]
 gi|257167745|gb|ACV49437.1| ribonucleoside-diphosphate reductase, alpha chain [Halomicrobium
           mukohataei DSM 12286]
          Length = 564

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 155/616 (25%), Positives = 255/616 (41%), Gaps = 110/616 (17%)

Query: 309 INGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             G  IE    +     +A   A +  + +  A +FY+ +S   +  ++P   N G    
Sbjct: 31  DEGYLIEGVTAEERVREIAER-AEEILDDDGFADKFYDYMSRGFYSLASPVWSNFGLDRG 89

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
              SCF + + D++  I     E   + K  GG    +  +R  G+ I   NGKS G   
Sbjct: 90  LPISCFGSYMEDNMESILYTQAEVGEMTKLGGGTSGYFGEIRPRGSPITN-NGKSNGSYS 148

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F ++ +     V+QG  R+G    Y++  H D++E+L+++     +     D+     I 
Sbjct: 149 FTELFDTIINVVSQGETRRGQFAGYIDVEHDDLDEWLNIKT----EGDPVQDIYYGVIIG 204

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D + + +                                                    W
Sbjct: 205 DDWFRAMVDGDE------------------------------------------EKRETW 222

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLG 603
            +++      G P+I F+D  N   PQ +      ++ SNLCTEI L ++ +E+ VC L 
Sbjct: 223 AEIIETRINIGVPYIIFRDNMNDGKPQVYKDRGYEINGSNLCTEIALPATPDESFVCCLS 282

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSNHTHRAIG 657
           S+N L +      D  K    + T  R LD VI+           +E+  +    HRA+G
Sbjct: 283 SMNALHY------DEWKDTDAVETLTRFLDAVIEEFIQEAEGTQFMERPVRFAKRHRAVG 336

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G++G+ S L    IP+ S EA+E  +     I   +   S  LA E G     +G    
Sbjct: 337 IGVLGWHSYLQSEMIPFDSMEAMEKNEAIFRTIKERSYEESRRLADEFGEPEVLEG---- 392

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                                  G RN+  M++APT + + I G
Sbjct: 393 --------------------------------------YGRRNATTMSVAPTKSSSVILG 414

Query: 778 -VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            VS SI+P   N +V+       T  N FL   LK+R   +  +   +  +DGS+ +++ 
Sbjct: 415 QVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKERGRDEREVWDSIAQNDGSVQHLDC 474

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWL 894
           + D+ K++  T  EI  M +I  A++RQK IDQAQSLN+ +D  E S K+++ +Y +AW 
Sbjct: 475 LTDEEKEVFKTFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWK 534

Query: 895 MGLKTTYYLRSRSATS 910
            G+K+ YY  S +A  
Sbjct: 535 KGVKSLYYQHSVNAAQ 550


>gi|313680374|ref|YP_004058113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153089|gb|ADR36940.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 961

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 135/600 (22%), Positives = 239/600 (39%), Gaps = 91/600 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431
           +  V DD+ GI  A  E A LA        D++ +R  GA +  + G + G + +L ++ 
Sbjct: 202 VIVVRDDMGGIMDAAAEAARLALAGEEPRVDFSQLRHEGAEVKSSGGTASGPVSYLLEIY 261

Query: 432 ND------------------------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++                            V QGG R+GA  A ++  H DV +FL  + 
Sbjct: 262 DNFLEWANRGGPDAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIDVAHPDVLDFLTAKD 321

Query: 468 NTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--EN 524
              +         N +    D F++ + ++  W +     V   +  Y +  E AY  E 
Sbjct: 322 LDREAAEGDISTFNISILATDAFVEALEKDELWPVRL-RPVPGKY--YLQPVEGAYTGEW 378

Query: 525 YE----RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
            E        R        + A  +W ++    + TG P + F D  N +S  + +G   
Sbjct: 379 PELGVAEDGARPVPVYEGGVPARWIWHEVAWHAWATGEPGLIFIDRVNEKSALKGLGERW 438

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + ++N C EI L         C+LG++NL A+  +  FDY+     +RTAVR LDNV+D
Sbjct: 439 QIRATNPCGEIPLTVGEP----CDLGALNLAAYVEDGAFDYEAFRRDVRTAVRFLDNVLD 494

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  ++++   R +GLG+MG   AL  + +PY S  A E   + M  +   A++A
Sbjct: 495 VNVFALEDNREASQQLRRLGLGVMGLADALIKMGLPYDSEAAREAVWKIMSVMREEALAA 554

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  L  ERG +  ++      G   I                                  
Sbjct: 555 SEALGAERGVFPLYEEEAEYFGRMGIKPR------------------------------- 583

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR---- 813
            RN   + +APT T + + GVS  I+P +     +        +V+      ++Q     
Sbjct: 584 -RNLAVLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLVHPLFQELMEQHPPHP 642

Query: 814 -----DLWDEA-MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-- 865
                  WD   +I+ ++ + GS+  +E +P+ ++ +   A ++ P+  +      Q+  
Sbjct: 643 DWEKDGTWDWDKLIAAIQENHGSVQGLEVVPESIRAVFKCAHDVSPLDHVRMQGVVQRAF 702

Query: 866 ----WIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
               ++  + S  +    E S + ++  Y +A+  G K     R  S      S  K  +
Sbjct: 703 DAEGYVGNSLSKTINLPHEASVEDVEAAYTEAYRTGCKGVTVYRDGSRDYQVLSVTKEEE 762



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 39/177 (22%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFH 350
           F+     I   +Y    +G         F RVA  +AL E E  +   A  FY L+++  
Sbjct: 6   FDEHAKAIAERQYLQPGDGDVF----GIFRRVADWVALPEDEATRSGWADTFYELMATKR 61

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTT----VPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           F      L  +GT H  + +CF+       P    GI    ++ A++ K  GG G +  P
Sbjct: 62  FCPGGRVLAGAGTAHGNVLNCFVQGATAHPPASFEGIMEVAKKLALVTKVGGGNGVNLDP 121

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
                  +    G  +G+                         AY++  H DVE+F+
Sbjct: 122 YVYRERPV----GVVRGI-------------------------AYMDAAHRDVEDFI 149


>gi|328956633|ref|YP_004374019.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328672957|gb|AEB29003.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 849

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 165/736 (22%), Positives = 274/736 (37%), Gaps = 128/736 (17%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  E+  EKR V +   Y  L S +F+ +   L+ +G  
Sbjct: 122 VIEKPLEIFYEQIAKRNATGLAAIESTPEKRKVAYTAFYEELKSLNFVPAGRVLYGAGSK 181

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  VPD   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVPDSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + +L         V QGG R+GA    L  WH D+ EF+  +       R   +  T 
Sbjct: 242 GAVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLIENTTD 301

Query: 483 NWIPDLFMK----------------------------------------RVTQNAGWTLF 502
             I  L                                           ++ +   +++ 
Sbjct: 302 AQIKKLATDKLLFTPFTEREIAMYQSILNYKNVPGYGGFDATLIKEAAAKLNEGGTYSVH 361

Query: 503 SPDEVSD------LHDLYGKEFEI---------AYENY---ERQADRGEI---------- 534
            PD +S       L   + +  E          A E Y   E +                
Sbjct: 362 DPDFLSGANISVCLTTDFMEAVEKGADYPLRFPAVETYSPEEMEEYNAHWSEIGDVRDWE 421

Query: 535 ------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
                   +R I A  LW+ +         P I F D  N  +     G  V ++N C E
Sbjct: 422 SSGHGVHTYRTIPARELWKLITICATYAAEPGIFFIDNANQMTNASAYGQKVVATNPCGE 481

Query: 588 ITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL ++NL  +A+  +   ++DKL  T++  VR+ DNVID   + + +
Sbjct: 482 QPLAP----YSVCNLAAVNLAEMANKKSGTINFDKLKQTVQVGVRMQDNVIDATPYFLAE 537

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K     R +GLG+MG    L      Y S E  ++ D+  E I+  A  AS+ELA+ER
Sbjct: 538 NEKQALGERRVGLGIMGLADLLIYCGAEYGSQEGNQLVDKIFEVIAVSAYEASIELAKER 597

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++    G    +            ++R++   +   +     + + +   G+RNS+ + 
Sbjct: 598 GSFPFLIGKTEAE----------TTKLREKFLQSGYMKKMPKHIHEGIMRYGIRNSHLLT 647

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P Y   Y +S   G F  V + +V E                
Sbjct: 648 VAPTGSTGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEYLDH------------ 695

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                  + E  P+ L K   +A  + P   ++     Q+WID + S  +      + ++
Sbjct: 696 -------HPETDPERLPKQFVSAMSLKPEAHVDVQCTIQRWIDSSISKTVNAPRGYTVEQ 748

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSV---EKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  IY + +  G K  T Y   SR    +    + T+   + K    P          + 
Sbjct: 749 VQTIYERLYKGGAKGGTVYVDGSRDTQVLTLKAEETIWDEETKEELSPTAQKTIQVAPIS 808

Query: 940 IPSSCTSD--TECEVC 953
             +   ++    C +C
Sbjct: 809 EENKYGNEVGDTCPIC 824


>gi|262285103|gb|ACY41131.1| ribonucleotide reductase subunit 1 [Wood mouse herpesvirus]
          Length = 783

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 172/813 (21%), Positives = 307/813 (37%), Gaps = 105/813 (12%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A I   + +         +  R L  K+R EV T    +            Y + F R 
Sbjct: 18  DAAIAELKLMAGHSHEANLLAGRLLHFKMR-EVCTQSVSQ------------YLDVFARV 64

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           ++EG+ A + + S    ++V       +       YL     YD Y L       E    
Sbjct: 65  LDEGLCAFIGNYSQSLDEMVQRYVSGGFAAVKENGYLAAARFYDTYVLRNED-IYESVPH 123

Query: 320 FFMRVAMGLALKETEKE---------------------KRAVEFYNLLSSFHFMCSTPTL 358
            FMR+A   A    + E                          F+ +++S    C+TP +
Sbjct: 124 MFMRIATFCAYYCIQNECLFKTLKHMELDRGNVVENAIDLITYFFEMVASQQVCCATPVM 183

Query: 359 FNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            ++G R   LSSCF+   T+  +   +     E   L     G+G D T           
Sbjct: 184 RSAGLRDANLSSCFILAPTLDSEEKTVEAVFSELTKLLACKSGVGMDLT----------- 232

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T    + +   LK  +      N    R  +V AY+E WH ++ +FL  +     +  R 
Sbjct: 233 TYSHGKNLHALLKAMDGQICYFNDHNIRPVSVAAYMEIWHTNIMDFLTAKLPENPE--RC 290

Query: 477 HDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
            ++     IP++F +    +  + W LF P +   L   YG  F IAY     Q     +
Sbjct: 291 SNIFQGVCIPEIFFRTYKNDPESNWYLFDPSKAEILTHSYGYMFSIAYAGLVEQGAYEAV 350

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG----VVHSSNLCTEITL 590
              + +        +++ + +TG P++  K   N     +        ++ +NLC E+  
Sbjct: 351 VPIKSV-----MFALVSCIIKTGGPYVLNKKAINRHDWHEWSSHQSRAINCANLCAEVIQ 405

Query: 591 NSSSEETAVCNLGSINLLAHFANN--------------QFDYDKLASTIRTAVRVLDNVI 636
                  + CNL +I L     ++              +F  +KL      AV +++  I
Sbjct: 406 YPGDN-VSTCNLANICLPKCLEDDKYTSGKSCLLTYEREFSIEKLERATEAAVFIINACI 464

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  ++A++   + R++G+G+ G      L+ + Y    +  +  +  E + F+A++
Sbjct: 465 YGGTLPTQRARRG-QSDRSMGIGVQGLADTFALMGLGYFDGGSEILDQKIAETLYFNALN 523

Query: 697 ASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            S+ L +  +   Y++++ S    GV       + + +         +R  W++L +  +
Sbjct: 524 TSINLVKIGKGEPYANYEESKHAIGVLHWHDWDMCSPMV-------YTRDEWEDLARSCE 576

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ NS  +A  PTA    I G S S  P Y ++  K +   +    N  L++ +  R+
Sbjct: 577 VHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEILRPNMTLMSRMSDRE 636

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                 +  L+  +  I  +        +I  +AF+ DP   +  A  R  +IDQ+QS+ 
Sbjct: 637 ------VQLLRECNWDIAKLPEPLLQKYRIFLSAFDYDPSLYVRRAMLRAPFIDQSQSMT 690

Query: 875 LYLDEP---SGKKLDFIYRQAWLMGLKT-TYYLRSRS-ATSVEKSTLKGVDGKL------ 923
           L+L+E    S   +  +    W  GLKT  YY R R  ATS E   ++    +       
Sbjct: 691 LFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNEFECVRRNSQQKYVNCAG 750

Query: 924 --NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              A      ++     G   S +S   C  CQ
Sbjct: 751 GEGAEGEEPSDNCIKVEGAMCSLSSGASCLHCQ 783


>gi|55978392|ref|YP_145448.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB8]
 gi|55773565|dbj|BAD72005.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermus
           thermophilus HB8]
          Length = 559

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 172/627 (27%), Positives = 258/627 (41%), Gaps = 117/627 (18%)

Query: 301 LYDR--YFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LY R  Y L    +     E+ Q      A  L   E        +F   ++   +  +T
Sbjct: 20  LYMRRGYLLPGVSVEERVKEIAQR-----AEALTKVEG----FGRKFLEYMARGWYSLAT 70

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P   N G R     SC+ T V DD   I  A+ E  M++K  GG       +R  GA I 
Sbjct: 71  PIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSKQGGGTSLYLGRLRPRGAPIR 130

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             NG+S G   F  + +      NQG  R+G   AYL+  H D+EE+L +++    +   
Sbjct: 131 D-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHPDLEEWLSIQR----EHSP 185

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              +     + D +++ +    G                                     
Sbjct: 186 VQSLFWGVSVGDRWLEEMIAGDG------------------------------------- 208

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVG-VVHSSNLCTEITLNS 592
                   A W K+L    E G P++ F+D  N ++P   + +G  + +SNLCTEI L S
Sbjct: 209 -----EKRARWAKILKSRAEVGIPYLFFRDNANQKAPEVFRALGKTIWASNLCTEIMLPS 263

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKA 646
           S EE+ VC L S+NLL +      +  K    + T V  LD+V+D           +E+A
Sbjct: 264 SEEESFVCCLSSLNLLHY------EEWKDTDAVETLVIFLDSVLDDFIEKAEGIPYMERA 317

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +    +RAIGLG++G+ S L    IP  SPEA     E  + I   A  AS  L +   
Sbjct: 318 VRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEIFKTIRERAEEASRWLRKRH- 376

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                          P D +  + E+++                        RN+  +AI
Sbjct: 377 ---------------PEDELAGVGELKER-----------------------RNATLLAI 398

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT + A I G VS SI+P   N Y+K          N FL   L+++   +E +   + 
Sbjct: 399 APTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPFLEEVLREKGKDEEKVWRSIL 458

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKK 884
            H+GS+ +++ + D+ K +  T  EI  M L+  A+ RQK IDQ QSLNL    E   + 
Sbjct: 459 EHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQKHIDQGQSLNLVIHPEAPPRD 518

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++ +   AW  GLK  YY  S+S    
Sbjct: 519 VNALVLHAWRSGLKALYYQFSQSVAQA 545


>gi|319954719|ref|YP_004165986.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
 gi|319423379|gb|ADV50488.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
          Length = 595

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 157/620 (25%), Positives = 259/620 (41%), Gaps = 121/620 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P+     +A   A K  +    + +FY  +S  ++  ++P   N G       SCF +
Sbjct: 60  ETPEQRIREIADR-AEKLLDMPGFSDKFYGYMSDGYYSLASPVWSNFGKERGLPISCFGS 118

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + DD+  I     E  M++K  GG    +  +R  GA +   NG++ G +  +++    
Sbjct: 119 HIDDDMGNILYTQSEVGMMSKMGGGTSGYFGKIRHRGAEVKN-NGQASGAVHIMQLFESM 177

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+QG  R+G    YL   H D+ EFL++    G +     ++     + + +M+ + 
Sbjct: 178 VDVVSQGSVRRGRFSPYLPVEHPDISEFLEI----GTEGNPIQELTHGVTVTNEWMQEMI 233

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
                                                            A+W K+L    
Sbjct: 234 DGDS------------------------------------------DKRAIWAKVLQRRG 251

Query: 555 ETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           E G+P+I FKD  N       + +   +++SNLCTEI L S+   + VC L SIN++ + 
Sbjct: 252 EMGYPYIFFKDNANNGAADVYKDNNHTIYASNLCTEIMLPSNDNWSFVCVLSSINVMHY- 310

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVID------------------INCHTIEKAKKSNHTH 653
                D  K    + T V  LD VI                        +E+A      +
Sbjct: 311 -----DKWKDTDAVETMVYFLDAVITEFLDKLEVYRDSDRREDRQTFLFMERAYNFAKDN 365

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RA+GLG++G+ S L    +P+ S +A ++ +E    I   +  AS ELA + G  +  KG
Sbjct: 366 RALGLGVLGWHSLLQSEMLPFNSQKAYDLNNEIFRTIKSKSYKASEELASKFGEPAVLKG 425

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                                      G RN+   A+APT + A
Sbjct: 426 ------------------------------------------YGRRNATLNAVAPTTSSA 443

Query: 774 NICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I G VSQ I+P + N+YVK       T+ N FLV+ L+++      +   ++  DGS+ 
Sbjct: 444 FILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVDLLEEKGQNITEVWHSIRERDGSVQ 503

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL--YLDEPSGKKLDFIYR 890
           +++ + D  K++  T  EID + +I  A+ RQ  IDQ QS+N+  + D P  K+++ I+ 
Sbjct: 504 HLDFLSDLEKEVFKTYSEIDQLDIIYQAANRQNHIDQGQSVNIIVHPDMP-VKEINKIHV 562

Query: 891 QAWLMGLKTTYYLRSRSATS 910
            AW +GLK+ YY  S +A  
Sbjct: 563 TAWKLGLKSLYYQHSMNAAQ 582


>gi|253583701|ref|ZP_04860899.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834273|gb|EES62836.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 754

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/646 (21%), Positives = 262/646 (40%), Gaps = 97/646 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y    +G   E    +  RV+ G             E   ++++  F+ + 
Sbjct: 13  LGIDIWEKKY--KYDG---ETFSEWLERVSGG-----------EQELKEMIANKEFIFAG 56

Query: 356 PTLFNSGTRH-----PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N G           +   +    D+L  IF   ++ A    Y GG G D + +R  
Sbjct: 57  RILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYSYGGGCGVDISKLRPR 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ ++ +   + G I F+++ N T   + Q G R+GA+   ++  H DV EF+ ++    
Sbjct: 117 GSEVNNSAKHTTGSISFMELYNLTTDIIGQKG-RRGALMISIDVNHPDVSEFISIK---- 171

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  +    N +  +   FMK V +   +                          E   +
Sbjct: 172 SDLNKIQKANISVRVDANFMKAVIEGMQFVT------------------------EFLVE 207

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                V ++I A  L++++    ++   P I F D  +  +            +N C E 
Sbjct: 208 DTGEVVTKEIDARKLFKELARQNWKFAEPGILFWDRISKWNLLSEDEEFEYAGTNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKA 646
            L +       C LGS+ L       +F++D+LA  ++ +V+ L++V+D     H +E+ 
Sbjct: 268 PLPAGGS----CLLGSLILPTFVEGKEFNFDRLAKVVQKSVKALNDVLDEGLPLHPLEEQ 323

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++S    R IGLG++G    L  + + Y SPE++E  D+  + I  +A+ AS  LA++ G
Sbjct: 324 RESVRDWRQIGLGILGVGDLLIKIGMKYGSPESLEFCDKIAKVIVDNALKASALLAKDFG 383

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           AY  +K     +  F +++  +                   E  + ++  G+RNS  + I
Sbjct: 384 AYPKYKADKVLKSEFLLENASI-------------------ETLELIEKYGLRNSQLLTI 424

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSN--MSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           APT +I  +   S  I+P++   YV+    + G+      F+    K  +          
Sbjct: 425 APTGSIGTMLETSTGIEPNFAFSYVRKTESLHGEDVFYKVFIPIAKKYME---------- 474

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                   N     +DL +   TA  ++P   I+     QK ID + S  +  +++ S +
Sbjct: 475 -------ENNITDEEDLPEYFVTAQSLNPYDRIKMQGVWQKRIDASISSTINLVNKVSVE 527

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           +++ +Y +AW  GLK     R+        +     + K+  + + 
Sbjct: 528 EVEKLYLEAWKNGLKGMTIYRAGCDREGILTVTPKAEKKIEELALP 573


>gi|9629623|ref|NP_044899.1| ribonucleotide reductase large [Murid herpesvirus 4]
 gi|6625624|gb|AAF19325.1|AF105037_57 61 [murid herpesvirus 4]
 gi|2317993|gb|AAB66451.1| ribonucleotide reductase large [murid herpesvirus 4]
          Length = 783

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 162/820 (19%), Positives = 306/820 (37%), Gaps = 105/820 (12%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +   A I   + +         +  R L  K+R EV T    +            +
Sbjct: 11  VQTVNAIDAAIAELKLMAGHSHEANVLAGRLLHFKMR-EVCTQTVAQ------------F 57

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            + F   ++EG+ A + + S    ++V       +       YL     YD Y L  N  
Sbjct: 58  LDAFSSVLDEGLCAFIGNYSQSLDEMVQRYVSGGFAAVKENGYLAAARFYDTYVLR-NDV 116

Query: 313 RIEMPQAFFMRVAMGLALKETEKE---------------------KRAVEFYNLLSSFHF 351
           + E     FMR++   A    + E                          F+ +++S   
Sbjct: 117 KYESVPHMFMRISAFCAYHCIQNECLFKTLKHMELDRGNVVENAMDLITYFFEMIASQQV 176

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL-QENAMLAKYSGGLGNDWTPVRG 409
            C+TP + ++G R   LSSCF+     D       A+  E   L     G+G D +    
Sbjct: 177 CCATPVMRSAGLRDANLSSCFIFAPALDSEEKTVDAVFSELTKLLACKSGVGMDLS---- 232

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
                  T    + +   LK  +      N    R  +V AY+E WH ++ +FL  +   
Sbjct: 233 -------TYSHGKNLHAVLKALDGQITYFNDHNIRPVSVAAYMEIWHTNIMDFLTAKLPE 285

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             +  R  ++     IP++F +    +  + W LF P +   L + YG  F IAY     
Sbjct: 286 NPE--RCGNLFQGVCIPEIFFRTYKNDPESNWYLFDPKKAEVLTNTYGYMFSIAYAGLVE 343

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH----VGVVHSSN 583
           Q     +   + +        +++ + +TG P+I  K   N     +        ++ +N
Sbjct: 344 QGAYEAVVPIKSV-----MFALVSCIIKTGGPYILNKKAINRHDWHEWSTHQYRAINCAN 398

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANN--------------QFDYDKLASTIRTAV 629
           LC E+         + CNL +I L     ++              +F  ++L      AV
Sbjct: 399 LCAEVIQYPGEN-VSTCNLANICLPKCLEDDKFVSGKSCLLTYEREFSIERLERATEAAV 457

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++  I       ++A++   + R++G+G+ G      ++ + Y    +  +  +  E 
Sbjct: 458 FIINACIHGGTLPTQRARRG-QSDRSMGIGVQGLADTFAMMGLGYFDAGSEILDQKIAET 516

Query: 690 ISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + F+A++ S+   +  +   Y++++ S    GV       + + +         +R  W+
Sbjct: 517 LYFNALNTSINFVKIGKGEPYANYEQSKHSIGVLHWHDWDMCSPMV-------YTRDEWE 569

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L +  +  G+ NS  +A  PTA    I G S S  P Y ++  K +   +    N  L+
Sbjct: 570 DLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEILRPNMTLM 629

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           + +       ++ +  L+  +  I  +        +I  +AF+ +P   +  A  R  +I
Sbjct: 630 SRM------SDSEVQTLRECNWDIAKLPEPLLQKYRIFLSAFDYEPSLYVRRAMLRAPFI 683

Query: 868 DQAQSLNLYLDEP---SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
           DQ+QS+ L+L+E    S   +  +    W  GLKT  YY R R   +  +      + + 
Sbjct: 684 DQSQSMTLFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNEFECVRRNSQQ 743

Query: 924 NAVPVTDPNSS---------THSLGIPSSCTSDTECEVCQ 954
             V   D   +           + G   S +    C  CQ
Sbjct: 744 KYVNCADGEGAGGEEPSENCIKAEGATCSLSVGASCLHCQ 783


>gi|331668937|ref|ZP_08369785.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064131|gb|EGI36042.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 375

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 16/371 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               E   LY ++  + +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQF----------EPPALY-DHVVKMVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y +   + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDL 510
           TLFSP +V   
Sbjct: 354 TLFSPSDVPGA 364


>gi|213584526|ref|ZP_03366352.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 478

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 129/514 (25%), Positives = 219/514 (42%), Gaps = 65/514 (12%)

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 1   MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 60

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +NA   LFSP ++   +     +  I+    E  AD    K +  I+A   ++ +
Sbjct: 61  FRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQTL 118

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+ +I F+D  N  +     G ++ SNLC+EI               +     
Sbjct: 119 AEIQFESGYLYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHD 176

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
             CNLGS+N+      +  D   +  T+ TA+R L  V D++   ++      N    AI
Sbjct: 177 ISCNLGSLNIA-----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAI 231

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S 
Sbjct: 232 GLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSR 291

Query: 716 WDQG-----VFPIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G         D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 292 YASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVP 351

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ NE                 
Sbjct: 352 PTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE----------------- 394

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKL 885
                            ++  A++I P  +I++ +   + +DQ  SL L + D  + + +
Sbjct: 395 --------------NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 440

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +     AW  G+K+ YY+R R    +E + ++G 
Sbjct: 441 NKAQIYAWRKGIKSLYYIRLRQLA-LESTEIEGC 473


>gi|332292140|ref|YP_004430749.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170226|gb|AEE19481.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 596

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/625 (24%), Positives = 253/625 (40%), Gaps = 133/625 (21%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAV-------EFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
            P+     VA        ++ ++ +       +FY  +S   F  ++P   N G      
Sbjct: 62  SPEERIREVA--------DRAEQILGIPGFSDKFYGYMSEGFFSLASPVWSNFGKERGLP 113

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCF + + DD+  I     E  M++K  GG    +  +R  GA +   NG++ G +  +
Sbjct: 114 ISCFGSHISDDMGNILYTQSEVGMMSKLGGGTSGYFGKIRPRGADVKN-NGQASGSVHIM 172

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++       V+QG  R+G    YL   H D+EEFL +    G +     ++     + + 
Sbjct: 173 QLFESMVDVVSQGSVRRGRFSPYLPIEHADIEEFLKI----GTEGNSIQELTHGVTVTNE 228

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +M+ +                                               +  +LW K
Sbjct: 229 WMEEMIAGDS------------------------------------------AKRSLWAK 246

Query: 549 MLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +L    E G+P+I F D  N       + +   +++SNLCTEI L S+ + + VC L S+
Sbjct: 247 VLQSRGEMGYPYIFFTDNANNGAADVYKDNDHKIYASNLCTEIMLPSNDDWSFVCVLSSV 306

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------------INCHTIEKAK 647
           N+L +      D  K    + T V  LD VI                        +E+A 
Sbjct: 307 NVLHY------DKWKNTDAVETMVYFLDAVITEFLEKLERYRDSDSREDRQTFLFMERAY 360

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                +R++GLG++G+ S L    +P+ S EA  +  E  + I   +  AS ELA+  G 
Sbjct: 361 NFAKANRSLGLGVLGWHSLLQSRMLPFNSQEAYNLNSEIFKAIKDKSYEASEELAKTFGE 420

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
               KG                                           G RN+   A+A
Sbjct: 421 PEVLKG------------------------------------------YGRRNATLNAVA 438

Query: 768 PTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT + A I G VSQ I+P + N+YVK       T+ N FL   L+++ +    +   ++ 
Sbjct: 439 PTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLEELLEEKGMNTTEVWRSIRD 498

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYLDEPSGKKL 885
            DGS+ ++E + ++ K    T  EID M +I  A+ RQ  IDQ QS+N +   E   K++
Sbjct: 499 MDGSVQHLEFLSENEKDTFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPEMPVKEI 558

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATS 910
           + I+  AW +GLK+ YY  S +A  
Sbjct: 559 NKIHVTAWKLGLKSLYYQHSMNAAQ 583


>gi|149369594|ref|ZP_01889446.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
 gi|149357021|gb|EDM45576.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
          Length = 596

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/619 (25%), Positives = 253/619 (40%), Gaps = 121/619 (19%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            P+     VA   A +       A +FY  +S   +  ++P   N G +     SCF + 
Sbjct: 62  SPEQRIREVAER-AEEILGMPGYADKFYGYMSEGFYSLASPVWSNFGKKRGLPISCFGSH 120

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DD+  I     E  M++K  GG    +  +R  GA I   NG++ G +  +++     
Sbjct: 121 IDDDIGNILYTQSEVGMMSKLGGGTSGFFGKIRPRGAAITN-NGEASGAVHIMRLFESMV 179

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QG  R+G    YL   H D++EFL++    G +     ++     + + +M+ +  
Sbjct: 180 DVVSQGSVRRGRFSPYLPIDHADIKEFLEI----GSEGNPIQELTHGVTVTNEWMEEMIA 235

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                                                            +W K+L    E
Sbjct: 236 GDE------------------------------------------EKRTIWAKVLQSRGE 253

Query: 556 TGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            G+P++ F D  N  +   +      +H+SNLCTEI L S    + VC L SIN+L +  
Sbjct: 254 MGYPYVFFTDNANNGAADVYQDKNHKIHASNLCTEIMLPSDHNWSFVCVLSSINVLHY-- 311

Query: 613 NNQFDYDKLASTIRTAVRVLDNVID------------------INCHTIEKAKKSNHTHR 654
               D  K    + T V  LD VI                        +E+A      +R
Sbjct: 312 ----DKWKDTDAVETMVYFLDAVITEFLEKLESYKNSEDREDRQTFLFMERAYNFAKENR 367

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           A+GLG++G+ S L      + S EA  +  E  + I   +  AS ELA+  G     KG 
Sbjct: 368 ALGLGVLGWHSLLQSKKHAFNSQEAFNLNSEIFKIIKDKSYKASEELAKAFGEPEVLKG- 426

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                                     G RN+   A+APT + A 
Sbjct: 427 -----------------------------------------YGRRNATLNAVAPTTSSAF 445

Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G VSQ I+P + N+YVK       T+ N FLV  L+++ +    +  D++  DGS+ +
Sbjct: 446 ILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVELLQEKGMDTREVWLDIRDKDGSVQH 505

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL--YLDEPSGKKLDFIYRQ 891
           ++ + ++ K +  T  EID M +I  A+ RQ  IDQ QS+N+  + D P+ K+++ ++  
Sbjct: 506 LDFLTENEKDVFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPDMPT-KEVNKLHIT 564

Query: 892 AWLMGLKTTYYLRSRSATS 910
           AW +GLK+ YY  S +A  
Sbjct: 565 AWKLGLKSLYYQHSMNAAQ 583


>gi|312195035|ref|YP_004015096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
 gi|311226371|gb|ADP79226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
          Length = 1016

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 129/635 (20%), Positives = 240/635 (37%), Gaps = 37/635 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + E    E   +L    F  ++P  FN GT  PQ +S+CF+  V D +  I  
Sbjct: 170 GYFASDEDAEIFEHELTYMLLHQMFSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILN 229

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 230 WYREEGLIFKGGSGSGLNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 288

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
           + A    L+  H D+ EF++ +    D  R   D   A +  DL  K +T    QNA  +
Sbjct: 289 RAAKMVVLDVDHPDIVEFVETKAREEDKVRALRD---AGFDMDLGGKDITSVQYQNANNS 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   D+        G  F++          R + +V   I A  L RK+ T  +E   P 
Sbjct: 346 VRVTDDFMRAVQ-DGISFDLR--------ARMDHRVIESIDARGLMRKIATAAWECADPG 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619
           I +    N        G + +SN C+E     +S     CNL S+NL+    ++  FD +
Sbjct: 397 IQYDGVINDWHTTPEAGRISASNPCSEYMHLDNSS----CNLASLNLMRFLRSDLTFDVE 452

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +   +  +D  I        +  +    +R +G+G     + L      Y S   
Sbjct: 453 GFVHAVELIITAMDISICFADFPTPQITEVTRAYRQLGIGYANLGALLMASARAYDSEGG 512

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DE 735
             +A      ++  A   S ELA   G Y  +                    VR    ++
Sbjct: 513 RTLAAAITSLMTGTAYRRSAELAGVVGPYDGYARDADGHRRVIRKHAAANDAVRSVHSED 572

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
             +   +   W +     +  G RN+    +APT TI       +  I+P    + +K  
Sbjct: 573 ARILAAAGQEWAKCLTIGERDGWRNAQASLLAPTGTIGLAMDCDTTGIEPDLALVKMKKL 632

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKKIHATAF-- 849
           + G    + +  V    +   + E  +  +  +    G++   P    +  ++   A   
Sbjct: 633 VGGASMKIVNQTVPAALRALGYTEETLEAIVEYIAEHGHVIDAPGLRPEHYEVFDCAIGE 692

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I P+  +   +  Q ++  A S  + +    + ++++ IY + W +GLK     R   
Sbjct: 693 RAIAPIGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEIYVEGWKLGLKALAIYRDNC 752

Query: 908 ATSVEKSTLKGVDGKLNAV-PVTDPNSSTHSLGIP 941
                 + ++G    ++    + D N+ T +   P
Sbjct: 753 KVGQPLTDVRGAKRSVDEAKAIADANAGTSAAPAP 787


>gi|111224293|ref|YP_715087.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111151825|emb|CAJ63545.1| Vitamin B12-dependent ribonucleotide reductase (partial) [Frankia
           alni ACN14a]
          Length = 711

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 121/617 (19%), Positives = 225/617 (36%), Gaps = 44/617 (7%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFG 385
           G    + + E    E   LL    F  ++P  FN GT  PQ ++SCF+    D L  +  
Sbjct: 93  GYFASDDDAEIFEHELIWLLLHQAFSFNSPVWFNVGTDLPQQVASCFILAADDSLDSVLD 152

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
             ++ A+L +   G G + + +R   A +  +   + G +  ++ A+ +A ++  GG  R
Sbjct: 153 WYRDEALLFRGGAGSGVNLSRMRST-AELLPSGRPAPGPVSIMRGADASAGSIRTGGAPR 211

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT----QNAGWT 500
                  L+  H D+ +F++ +     + R+   ++ A +  D+  + +     QNA   
Sbjct: 212 PATKIVILDVDHPDIADFIECKAR---EERKIRALHDAGFDMDVGGRDIDSVQFQNANNA 268

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   D              +A +       RG+ +  R + A  ++R +    +E   P 
Sbjct: 269 VRVSDAFMRA---------VAADQSIELRARGDGQTVRTVPARKIFRMIAQAAWECADPG 319

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + F D  N        G + +SN C+E     +S     C LGS+NLL     + +FD  
Sbjct: 320 LHFDDTINSWHTCPASGRISASNSCSEYMHLDNSS----CTLGSLNLLRFLGRDRRFDAT 375

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
             A+ +   V  +D  +        +   +  + R +G+G     + L      Y S E 
Sbjct: 376 SFAAAVELVVLAMDISLCFAEVPSRQIGDATRSFRQLGVGHANLGALLMATGQAYDSEEG 435

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
              A      +S  A   S E+A   G Y  F  +               A +R   A  
Sbjct: 436 RATAAAITSLMSATAYRRSAEIAAVLGPYPGFTANAAAHRRVVARHSAAHAAIRHPPAAR 495

Query: 740 RT------------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
           R+            + L W+      +  G RN++   IAPT T        +  I+P  
Sbjct: 496 RSMEKSIHEQVLPRAGLEWERALLLGERHGWRNAHLTLIAPTGTTGLAMDCATMGIEPDL 555

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP---DDLKK 843
             + V+ + +G    + +  V        +  A ++ +     + G+    P    + + 
Sbjct: 556 ALVKVRKSATGSAMRLVNTTVPTALHALGYPRAAVARIVSFIAAHGHAVDAPGLRPEHQA 615

Query: 844 IHATA---FEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKT 899
           +   A     IDPM  +   +  Q ++    S  +      +   +  +    W  GLK 
Sbjct: 616 VFDCALGPRAIDPMGHVRMMAAVQPFLSGGISKTVNLQASATVDDVAALLYAGWRRGLKA 675

Query: 900 TYYLRSRSATSVEKSTL 916
               R  +      S +
Sbjct: 676 LAVYRDSAKVGQPISGV 692


>gi|30348566|emb|CAC84358.1| RRlarge [Saimiriine herpesvirus 2]
          Length = 767

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 184/809 (22%), Positives = 310/809 (38%), Gaps = 97/809 (11%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I +   +++    + +            E+   ++ K       E    Y   F  
Sbjct: 3   QETIISNLIDMLKVSAGWDREAN---------EISGRLFHKLMDMNSTETISQYMLLFGP 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLHI---NG 311
            +E  +    +     + D V L     Y  DF        L  +  YD Y L     N 
Sbjct: 54  LLEPHI-LEFIQNYEQEIDEVCLEYRASY--DFMCLRNCGILPAKRFYDTYVLPPKTENN 110

Query: 312 SRIEMPQAFFMRVAMGLA------------LKETEKEKRAVE----------FYNLLSSF 349
            + E    FF R+A   A            L   +K    VE          FY ++SS 
Sbjct: 111 GKYESIPHFFARIAAYCAWNCIMCESLKDTLVYIQKRDWNVEIKTDMHIFKYFYKVISSQ 170

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              C+TP + ++G     LSSCF+     D             ++   G L        G
Sbjct: 171 LVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKS--------TISSIFGELAPLLASRSG 222

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +G  +   +   + +   LK+ N      N    R  +V AY+E WH  + EFL  +   
Sbjct: 223 VGVDVTKFSFSGKNIHSCLKLINAQVEFFNDKSVRPVSVAAYIEVWHCQIHEFLSAKLPE 282

Query: 470 GDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             D  R + +     +P LF  M  V  N  W LF P +  +L  LYG EFE   E Y R
Sbjct: 283 NPD--RCNSIFQGVCVPSLFFKMYEVDPNGLWYLFDPKDAPNLVKLYGFEFE---EEYLR 337

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
                +    + ++  +L   ++  + +TG P++  K+  N     +  G  ++ SNLC 
Sbjct: 338 LVSEKKY--KQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCSNLCA 395

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVI 636
           EI        T+ CNL ++ L     +           QFD+ KL   ++ AV +++  I
Sbjct: 396 EIVQQPKQ-FTSTCNLANVCLPKCLNSSNFPYTCSNTAQFDFSKLEYAVQAAVFIINACI 454

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            ++      A       R++G+G  G       +   Y   E+  +  +  E + + A+ 
Sbjct: 455 -LSPSPTSSATVG-QRERSMGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVK 512

Query: 697 ASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            S E+    +   ++ F+ S    GVF   +   + +        R     W  L+  +K
Sbjct: 513 TSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--------RVPMKQWIHLQDNIK 564

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +K +D
Sbjct: 565 KFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMKPNITFLKNVKPQD 624

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L        ++++ G +  +        K   TAF+  P   +  AS R  ++DQ+QSL 
Sbjct: 625 LCT------VRFYGGDVSMMPEEVSTRYKHFLTAFDYCPEAQMRRASIRAPYVDQSQSLT 678

Query: 875 LYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG--KLNAVPV 928
           L+L E    S K L  +    + +GLKT  YY R +  T + +     +D   K +A  V
Sbjct: 679 LFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKKTTKLLQLECLKLDEHMKKDAQIV 738

Query: 929 TDPNSST--HSLGIPSSCTSD-TECEVCQ 954
               +     S     +C  D +EC  CQ
Sbjct: 739 VSDLARELLDSHKTEDTCPLDQSECIACQ 767


>gi|46255233|ref|YP_006145.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB27]
 gi|46198082|gb|AAS82492.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
           thermophilus HB27]
          Length = 559

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 173/627 (27%), Positives = 258/627 (41%), Gaps = 117/627 (18%)

Query: 301 LYDR--YFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LY R  Y L    +     E+ Q      A  L   E        +F   ++   +  +T
Sbjct: 20  LYMRRGYLLPGVSVEERVKEIAQR-----AEALTKVEG----FGRKFLEYVARGWYSLAT 70

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           P   N G R     SC+ T V DD   I  A+ E  M++K  GG       +R  GA I 
Sbjct: 71  PIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSKQGGGTSLYLGRLRPRGAPIR 130

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             NG+S G   F  + +      NQG  R+G   AYL+  H D+EE+L +++    +   
Sbjct: 131 D-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHPDLEEWLSIQR----EHSP 185

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              +     + D +++ +    G                                     
Sbjct: 186 VQSLFWGVSVGDRWLEEMIAGDG------------------------------------- 208

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVG-VVHSSNLCTEITLNS 592
                   A W KML    E G P++ F+D  N ++P   + +G  + +SNLCTEI L S
Sbjct: 209 -----EKRARWAKMLKSRAEVGIPYLFFRDNANQKAPEVFRALGKTIWASNLCTEIMLPS 263

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKA 646
           S EE+ VC L S+NLL +      +  K    + T V  LD+V+D           +E+A
Sbjct: 264 SEEESFVCCLSSLNLLHY------EEWKDTDAVETLVIFLDSVLDDFIEKAEGIPYMERA 317

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +    +RAIGLG++G+ S L    IP  SPEA     E  + I   A  AS  L +   
Sbjct: 318 VRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEIFKTIRERAEEASRWLRKRH- 376

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                          P D +  + E+++                        RN+  +AI
Sbjct: 377 ---------------PEDELAGVGELKER-----------------------RNATLLAI 398

Query: 767 APTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT + A I G VS SI+P   N Y+K          N FL   L+++   +E +   + 
Sbjct: 399 APTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPFLEEVLREKGKDEEKVWRSIL 458

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKK 884
            H+GS+ +++ + D+ K +  T  EI  M L+  A+ RQK IDQ QSLNL    E   + 
Sbjct: 459 EHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQKHIDQGQSLNLVIHPEAPPRD 518

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++ +   AW  GLK  YY  S+S    
Sbjct: 519 VNALVLHAWRSGLKALYYQFSQSVAQA 545


>gi|76803442|ref|YP_327711.1| ribonucleotide-diphosphate reductase subunit alpha [Natronomonas
           pharaonis DSM 2160]
 gi|76559257|emb|CAI50864.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 564

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 156/616 (25%), Positives = 254/616 (41%), Gaps = 110/616 (17%)

Query: 309 INGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             G  +E    +     +A   A +  + +  A  FY+ +S   +  ++P   N G    
Sbjct: 31  DEGYLLEGVTAEERVREIAER-AEEILDDDGFADRFYDYMSRGFYSLASPVWSNFGLDRG 89

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
              SCF + + D +  I     E   + K  GG    +  +R  G+ I   NGKS G   
Sbjct: 90  LPISCFGSYMEDSMESILYTQAEVGEMTKLGGGTSGYFGEIRPRGSPITN-NGKSNGSYS 148

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F ++ +     V+QG  R+G    Y++  H D+EE+L+++     +     D+     I 
Sbjct: 149 FTELFDTIINVVSQGETRRGQFAGYIDVEHDDLEEWLNIKT----EGDPVQDIYYGVIIG 204

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D + + +                                                    W
Sbjct: 205 DDWFQAMVDGDE------------------------------------------EKRETW 222

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLG 603
            +++      G P+I F+D  N   PQ +      +++SNLCTEI L ++ +E+ VC L 
Sbjct: 223 AEIIEARINIGVPYIIFRDNMNEGKPQVYKDKGYEINASNLCTEIALPATPDESFVCCLS 282

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSNHTHRAIG 657
           S+N L +         K    + T  R LD V++           +E+  +    HRAIG
Sbjct: 283 SMNALHYGE------WKDTDAVETLTRFLDAVMEEFIEEAEGTQFMERPVRFAKRHRAIG 336

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G++G+ S L    IP+ S EA++  +E    I   +   S  LA E G     +G    
Sbjct: 337 IGVLGWHSYLQSEMIPFDSMEAMKKNEEIFRTIRERSYEESRRLADEFGEPEVLEG---- 392

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                                  G RN+  M++APT + + I G
Sbjct: 393 --------------------------------------YGRRNTTTMSVAPTKSSSVILG 414

Query: 778 -VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
            VS SI+P   N +V+       T  N FL   LKQR   +  +   +   DGS+ +++ 
Sbjct: 415 QVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKQRGRDEREVWDSIAQQDGSVQHLDC 474

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWL 894
           + D+ K+I  T  EI  M +I  A++RQK+IDQAQSLN+ +D  E S K+++ +Y +AW 
Sbjct: 475 LTDEEKEIFKTFAEIPQMAIINQAAQRQKYIDQAQSLNISIDPSEVSVKEINQLYIEAWR 534

Query: 895 MGLKTTYYLRSRSATS 910
            G+K+ YY  S +A  
Sbjct: 535 KGVKSLYYQNSVNAAQ 550


>gi|237738296|ref|ZP_04568777.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420176|gb|EEO35223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 756

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 147/654 (22%), Positives = 264/654 (40%), Gaps = 97/654 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGL I   +Y    +G   E  +A+  RV+ G             E   ++ +  F+ + 
Sbjct: 13  LGLDIWEKKY--KYDG---ETFEAWLNRVSGG-----------DKELKEMIINKEFIFAG 56

Query: 356 PTLFN-----SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N      G +    +   +T   D+L  IF   ++ A    Y GG G D + +R  
Sbjct: 57  RILSNRGLAKLGRKITYSNCYVVTPPEDNLESIFDTAKKLARTYSYGGGCGVDISKLRPK 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA ++ +   + G I F+ + N T   + Q G R+GA+   ++  H DVEEF+ ++    
Sbjct: 117 GAEVNNSAKYTTGSISFMNLYNMTTDIIGQKG-RRGALMISIDVNHPDVEEFIKVK---- 171

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  +    N +  + + FMK V ++  +                            + +
Sbjct: 172 SDLNKVQKANISVRVDENFMKAVIEDRNYETVF------------------------KVE 207

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                + + I A  L++++    +    P I F D  +  +            +N C E 
Sbjct: 208 DTGEIIKKSIDAKKLFKELAIQNWRFAEPGILFWDRISNWNLLSEDEEFEYAGTNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKA 646
            L +       C LGS+ L +    N FD++KL S +  +V+ L++V+D     H +E+ 
Sbjct: 268 PLPAGGS----CLLGSLILPSFVGENGFDFEKLKSAVVKSVKALNDVLDEGLPLHPLEEQ 323

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++S    R IGLG++G    L  L + Y +PE++E  D+    I   A+SAS  LA+E G
Sbjct: 324 RESVRDWRQIGLGVLGVGDLLIKLGLKYGAPESLEFCDKVARTIIDTALSASALLAKEYG 383

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+  +K     Q  F +++                      E  + +K  G+RNS  + I
Sbjct: 384 AFPRYKEEKILQSPFLLENAST-------------------ETMELIKEYGLRNSQLLTI 424

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I  +  +S  I+P++   + +                 L   D++ +  I   K 
Sbjct: 425 APTGSIGTMLEISTGIEPNFAFSFTRKT-------------ESLHGEDVYYKVFIPIAKK 471

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKL 885
           +     N     D+L     TA  ++P   I+     QK ID + S  +  +++ S +++
Sbjct: 472 Y--MEDNNLTEEDELPDYFVTAQNLNPYDRIKMQGVWQKRIDASISSTINLVNKVSVEEV 529

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           + +Y + W  GLK     R       ++  +  V+ K    P         ++ 
Sbjct: 530 EHLYIEGWKNGLKGMTIYR----AGCDREGILTVEKKEEKNPEQALKEKMETIA 579


>gi|9626017|ref|NP_040263.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|266914|sp|Q01037|RIR1_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|66407|pir||WMBEP6 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60382|emb|CAA45684.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|330990|gb|AAA46137.1| ribonucleotide reductase large subunit [Saimiriine herpesvirus 2]
          Length = 767

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 179/812 (22%), Positives = 306/812 (37%), Gaps = 103/812 (12%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I +   +++    + +            E+   ++ K    +  E    Y   F  
Sbjct: 3   QETIISNLIDMLKVSAGWDREAN---------EISGRLFHKLMDMSSTETISQYMSLFGP 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLHIN---G 311
            +E  +    +     + D V L     Y  DF        L  +  YD Y L       
Sbjct: 54  LLEPHI-LEFIQNYEQEIDEVCLEYRASY--DFMCLRNCGILPAKRFYDTYVLPPRTEMN 110

Query: 312 SRIEMPQAFFMRVAMGLA------------LKETEKEKRAVE----------FYNLLSSF 349
            + E    FF R+A   A            L   +K    VE          FY ++SS 
Sbjct: 111 GKYESIPHFFARIAAYCAWNCIMCEPLKDTLVYVQKRDWNVEIKTDMQIFKYFYKVISSQ 170

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              C+TP + ++G     LSSCF+     D             ++   G L        G
Sbjct: 171 LVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKS--------TISSIFGELAPLLASRSG 222

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +G  +   +   + +   LK+ N      N    R  +V  Y+E WH  + EFL  +   
Sbjct: 223 VGVDVTKFSFGGKNIHSCLKLINAQVEFFNDKSVRPVSVATYIEVWHCQIHEFLSAKLPE 282

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             D  R + +     +P LF K    +    W LF P +  +L  LYG EFE   E Y R
Sbjct: 283 NPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYLFDPQDAPNLTRLYGLEFE---EEYLR 337

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
                +    + ++  +L   ++  + +TG P++  K+  N     +  G  ++ SNLC 
Sbjct: 338 LVSEKKY--KQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCSNLCA 395

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVI 636
           EI        T+ CNL ++ L     +           QFD+ KL   ++ AV +++  I
Sbjct: 396 EIVQQPKQ-FTSTCNLANVCLPKCLNSSNFPYTCSNTAQFDFSKLEYAVQAAVFIINACI 454

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            ++      A       R++G+G  G       +   Y   E+  +  +  E + + A+ 
Sbjct: 455 -LSPSPTSSATVG-QRERSMGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVK 512

Query: 697 ASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            S E+    +   ++ F+ S    GVF   +   + +        R     W  L+  +K
Sbjct: 513 TSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--------RVPMKQWIHLQDNIK 564

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +K +D
Sbjct: 565 KFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMKPNITFLKNVKPQD 624

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L        ++++ G +  +        K   TAF+  P   +  AS R  ++DQ+QSL 
Sbjct: 625 LCT------VRFYGGDVSMMPEDVSTRYKHFLTAFDYCPEAQMRRASIRAPYVDQSQSLT 678

Query: 875 LYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT--------SVEKSTLKGVDGK 922
           L+L E    S K L  +    + +GLKT  YY R +  T         +++ T K     
Sbjct: 679 LFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKKTTKLLQLECLKLDEHTKKDAQIV 738

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           L  +    P+S       P      +EC  CQ
Sbjct: 739 LADLARELPDSHKTEDACP---LDQSECIACQ 767


>gi|62327200|ref|YP_223938.1| ribonucleotide reductase [Phage phiJL001]
 gi|50059518|gb|AAT69490.1| ribonucleotide reductase [Phage phiJL001]
          Length = 602

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/611 (22%), Positives = 235/611 (38%), Gaps = 118/611 (19%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFL-TTVPDDL 380
           RVA  L     + E+   E   +L    FM +       G T++    +C++  T+ D  
Sbjct: 53  RVANAL----KDGEEHYKELREILLDMRFMPAGRVQAAMGSTKNVTAYNCYVSGTIEDSF 108

Query: 381 YGIFGAL----QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
               G++    ++ A   +  GG+G D++ +R  GA I     +S G + F+++ +    
Sbjct: 109 IDGHGSIMERAKQAAATMRMGGGIGYDFSTLRPNGALIKKLQSRSSGPLSFMQIYDSVCK 168

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V   G R+GA    L   H D+EEF+  + N  +        NT+  I D FM+ V   
Sbjct: 169 CVASSGHRRGAQMGVLRVDHPDIEEFIRAKHNEDN----LTGFNTSIAITDRFMECVISG 224

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + L            +G E                   +R I+A  LW  ++   ++ 
Sbjct: 225 EPFPL-----------TFGGE------------------TYRSINAENLWEMIMRSTWDW 255

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
             P   F D  N  +  ++   + ++N C E  L         C LGS NL+ +      
Sbjct: 256 AEPGTLFIDQINRMNNLKYCETIAATNPCGEQPLPP----YGACLLGSFNLVKYVKPFTG 311

Query: 613 ---------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                       FD+D  A+ +   VR +DNV+D   + + + +K   + R +GLG+   
Sbjct: 312 RVFVVGADSRWTFDWDLFATDVYAVVRAMDNVVDRAIYPLFEQEKEAKSKRRMGLGVTAL 371

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----SLWDQG 719
            +A   L +PY S E ++   + +E ++ ++  ASVELAQE+GA+  +      S + + 
Sbjct: 372 ANAAEALGMPYGSIEFLKFEGQVLETLACNSYQASVELAQEKGAFPLYDERYLDSEYVRQ 431

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
           V P                        +EL++ +   G+RNS+  +IAPT TI+      
Sbjct: 432 VLP------------------------EELQEDIGRYGIRNSHLTSIAPTGTISLTADNV 467

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P +   Y ++    D        V++   R    E                    
Sbjct: 468 SSGIEPVFSYGYDRTVHMPDGVRTER--VDDYGVRVFGVEG------------------- 506

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGL 897
                   T+ ++     ++  +  Q ++D A S    +      +    IY +AW  G 
Sbjct: 507 -------KTSDQVTAEEHVDVLTVAQGFVDSAVSKTCNVAPDMPWEDFKQIYFRAWEGGA 559

Query: 898 KTTYYLRSRSA 908
           K      S   
Sbjct: 560 KGCTTFNSGGK 570


>gi|320450284|ref|YP_004202380.1| ribonucleoside-diphosphate reductase subunit alpha [Thermus
           scotoductus SA-01]
 gi|320150453|gb|ADW21831.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermus
           scotoductus SA-01]
          Length = 556

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 169/619 (27%), Positives = 253/619 (40%), Gaps = 114/619 (18%)

Query: 305 YFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           Y L   G  +E   +    R A  L   E      + +F   ++   +  +TP   N G 
Sbjct: 26  YLLP--GVTVEKRVKEIADR-AEALTRIEG----FSRKFQEYMAKGWYSLATPIWANYGL 78

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +     SC+ T V DD   I  A+ E  M++K  GG       +R  GA I   NG+S G
Sbjct: 79  KRGLPISCYGTYVEDDTASILRAVAEIGMMSKQGGGTSVYLGALRPRGAPIRD-NGESNG 137

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
              F  + +      NQG  R+G   AYL   H D+EE+  +++  G+       +    
Sbjct: 138 SYAFASLFDRVIEVFNQGSTRRGQCAAYLPIEHPDLEEWFKIQREGGE----IQSLFWGV 193

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D +++                               E  ER                
Sbjct: 194 SVGDAWLEEAIAGDR------------------------EKRER---------------- 213

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSP--QQHVG-VVHSSNLCTEITLNSSSEETAVC 600
             W K+L    E G P+I F+D  N ++P   + +G  +H+SNLCTEI L S  EE+ VC
Sbjct: 214 --WAKVLKSRTEVGIPYIFFRDNANRQAPEVFKKLGKTIHASNLCTEIMLPSGPEESFVC 271

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNHTHR 654
            L S+NLL       FD  K    + T    LD+V+D           +E+A +    +R
Sbjct: 272 CLSSLNLL------HFDEWKDTDAVETLTIFLDSVLDDFIEKAEGIPYMERAVRFAKRYR 325

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           AIG+G++G+ S L    IP  + EA+ + +   + I   A  AS  L +           
Sbjct: 326 AIGIGVLGWHSYLQSKGIPLENAEALFLNNLIFKTIREKAEEASRWLRK----------- 374

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                       R P DEL   ++    RN+  +AIAPT + + 
Sbjct: 375 ----------------------------RHPEDELADLMER---RNATLLAIAPTKSSSF 403

Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G VS SI+P   N Y+K          + FL   L+ +   +E +   +   +GS+ +
Sbjct: 404 ILGQVSPSIEPYTSNYYLKDLQKARIAFRSPFLEELLQAKGKNEEKVWRSILERNGSVQH 463

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQA 892
           ++ + D+ K +  T  EI    L+  A  RQK+IDQ QSLNL    E   K ++ +Y  A
Sbjct: 464 LDFLSDEEKDVFKTFSEISQKTLVNLAIARQKYIDQGQSLNLVIHPEAPPKDVNELYLHA 523

Query: 893 WLMGLKTTYYLRSRSATSV 911
           W  GLK  YY  S SA   
Sbjct: 524 WRGGLKALYYQFSASAAQA 542


>gi|163786627|ref|ZP_02181075.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878487|gb|EDP72543.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 599

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 165/680 (24%), Positives = 271/680 (39%), Gaps = 138/680 (20%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
             + E+  + ++ +L     + R F         L   Y           P+     +A 
Sbjct: 33  EAIKEANTEPEIKWLT---DHSRKF---------LSSGYLTEDT-----TPEERIREIAN 75

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
             A K       A +FY  ++  ++  ++P   N G +     SCF + + DD+  I   
Sbjct: 76  N-AEKILNIPGFADKFYGYMAEGYYSLASPVWSNFGKKRGLPISCFGSHISDDMGDILYT 134

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             E  M++K  GG    +  +R  GA +   NG+S G +  +++       V+QG  R+G
Sbjct: 135 QSEVGMMSKLGGGTSGYFGKLRHRGAPVKN-NGESSGAVHIMQLFEKMVDVVSQGSVRRG 193

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
               YL   H D+ EFL++    G +     ++     + + +M+ +             
Sbjct: 194 RFSPYLPIEHNDINEFLEI----GTEGNPIQELTHGVTVGNEWMQEMIDGDT-------- 241

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                                A+W K+L    E G+P+I FKD 
Sbjct: 242 ----------------------------------EKRAIWAKVLQRRGEIGYPYIFFKDN 267

Query: 567 CNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
            N       Q++   +++SNLC+EI L ++   + VC L SINLL +      D  K   
Sbjct: 268 ANNTAPEVYQENKHEIYASNLCSEIMLPTNDRWSFVCVLSSINLLHY------DKWKDTD 321

Query: 624 TIRTAVRVLDNVID------------------INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
            + T V  LD V++                       +EKA      +RA+G+G +G+ S
Sbjct: 322 AVETMVYFLDAVLEEFVTKLEVYRDSPDRDDRQTFMFMEKAYNFAKENRALGMGALGWHS 381

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    +P+ S EA  +  E  + I   ++ AS ELA++ G     KG            
Sbjct: 382 LLQSKMLPFDSAEAFNLNSEIFKTIKEKSVKASEELAEKFGEPEVMKG------------ 429

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDP 784
                                          G RN+   A+APT + A I G VSQ I+P
Sbjct: 430 ------------------------------YGRRNATLNAVAPTTSSAFILGQVSQGIEP 459

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            + N YVK       T+ N FL   LK++ +    +   ++ +DGS+ ++E + +  K +
Sbjct: 460 IWSNSYVKDIAKIKTTIKNPFLKALLKEKGMDTVEIWKSIRDYDGSVQHLEGLTELEKDV 519

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYL 903
             T  EID M +I  A+ RQ  IDQ QSLN+ +      K ++ +Y  AW +G+K+ YY 
Sbjct: 520 FKTYSEIDQMTIIYQAANRQNHIDQGQSLNIMVHPDMPVKDINKLYVTAWQLGVKSLYYQ 579

Query: 904 RSRSATS--VEKSTLKGVDG 921
            S +A     +K      +G
Sbjct: 580 HSMNAAQKFKQKKECASCEG 599


>gi|126698858|ref|YP_001087755.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile 630]
 gi|255100279|ref|ZP_05329256.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-63q42]
 gi|255306218|ref|ZP_05350390.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile ATCC 43255]
 gi|115250295|emb|CAJ68117.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile]
          Length = 729

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/691 (21%), Positives = 272/691 (39%), Gaps = 88/691 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE+   + +K     +   +CL  E     +E  +      +    + L          +
Sbjct: 36  RELAYDISRKIANDYNSMEKCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTK 95

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            + F+ L   I  ++Y    NG   E    +  R++       + +  + +     L + 
Sbjct: 96  AWEFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAG 145

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R 
Sbjct: 146 RILANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRP 204

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA ++     + G + F+++ + T   + Q G R+GA+   ++  H ++E+F+D++   
Sbjct: 205 KGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEDFIDIKT-- 261

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D  +    N +  + D FM+ V +                 LY   FE+         
Sbjct: 262 --DLEKVTKANISVRVTDEFMQAVREK---------------KLYNCTFEVETTG----- 299

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
                K+ + ++A  L+ K +   ++   P I F D     +             N C E
Sbjct: 300 ----EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNFCFSGVNPCAE 355

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NC 640
             L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N 
Sbjct: 356 EPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNL 411

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  
Sbjct: 412 HPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSAL 471

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A+E G +S +K     +  F I+++                    ++ K+ VK  G+RN
Sbjct: 472 IAKEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRN 512

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  + I PT +I+ + G+S  I+P +   Y++                 L   D++ +  
Sbjct: 513 SQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVY 559

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E
Sbjct: 560 TPIVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFE 617

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + + +  IY +AW  GLK     R     S
Sbjct: 618 TTVEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 100/280 (35%), Gaps = 37/280 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTA-RFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           S  D+       +RT       ++        + KLR +                   LY
Sbjct: 174 SIEDIFDTAKKLART-------FSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELY 226

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   + G +  L+    MD +   + + +  + D  
Sbjct: 227 SMTTGLIGQRGRRGALMIS--MDVNHPEIEDFIDIKTDLE 264


>gi|257468300|ref|ZP_05632396.1| putative ribonucleotide-diphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062578|ref|ZP_07927063.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688254|gb|EFS25089.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 753

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/660 (21%), Positives = 264/660 (40%), Gaps = 97/660 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y    +G   E    +  RV+ G             E   ++++  F+ + 
Sbjct: 13  LGMDIWEKKY--KYDG---ETFNEWLERVSGG-----------DQELKEMIANKEFIFAG 56

Query: 356 PTLFNSGTRH-----PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N G           +   +    D+L  IF   ++ A    Y GG G D + +R  
Sbjct: 57  RILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYSYGGGCGVDISKLRPK 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+ ++ +   + G I F+++ N T   + Q G R+GA+   ++  H DV EF+ ++    
Sbjct: 117 GSEVNNSAKYTTGSISFMELYNLTTDIIGQKG-RRGALMISIDVNHPDVSEFISIK---- 171

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  +    N +  +   FMK V +   +                          E   +
Sbjct: 172 SDLNKIQKANISVRVDANFMKAVVEGLQFVT------------------------EFLVE 207

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                + ++I A  L++++    ++   P + F D  +  +            +N C E 
Sbjct: 208 DTGEVISKEIDARKLFKELARQNWKFAEPGVLFWDRISKWNLLSEDEEFEYAGTNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKA 646
            L +       C LGS+ L       +FD+D+LA+ ++ +V+ L++V+D     H +E+ 
Sbjct: 268 PLPAGGS----CLLGSLILPTFVEGKEFDFDRLANAVQKSVKALNDVLDEGLPLHPLEEQ 323

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++S    R IGLG++G    L  L + Y SPE++E  D   + I  +A+ AS  LA+E G
Sbjct: 324 RESVRDWRQIGLGILGVGDLLIKLGMKYGSPESLEFCDNIAKVIIDNALKASALLAKESG 383

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           AY  +K     +  F +++  +                   E  + ++  G+RNS  + I
Sbjct: 384 AYPKYKADKVLKSEFLLENASI-------------------ETLQLIEEYGLRNSQLLTI 424

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSN--MSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           APT +I  +   S  I+P++   Y++    + G+      F+    K  +  +     D 
Sbjct: 425 APTGSIGTMLETSTGIEPNFAFSYIRKTESLHGEDVFYKVFIPIAKKYMEENEIDDEDD- 483

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                           L +   TA  ++P   I+     QK ID + S  +  +++ S +
Sbjct: 484 ----------------LPEYFVTAQNLNPYDRIKMQGIWQKRIDASISSTINLVNKVSVE 527

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +++ +Y +AW  GLK     R+        +    V+ K+  + +            P +
Sbjct: 528 EVEKLYLEAWKNGLKGMTIYRAGCDREGILTVTPKVEEKIEELKLPAMPRGELKPIAPDT 587


>gi|297584572|ref|YP_003700352.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
 gi|297143029|gb|ADH99786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
          Length = 855

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 157/741 (21%), Positives = 270/741 (36%), Gaps = 131/741 (17%)

Query: 311 GSRIE-MPQAFFMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSG--TR 364
              +E   +    R A GL+  ET  E+R      FY+ L + +F+ +   L+ +G  T 
Sbjct: 123 DKPLEVYYEQIAKRNARGLSDVETNPEQREASFERFYHELVNMNFVPAGRVLYGAGSHTD 182

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  + D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPYIADSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + +L         V QGG R+GA    L  WH D+ EF+  +       R   +    + 
Sbjct: 243 VSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLSEQIEDHQ 302

Query: 485 IPDL------FMKRVTQNAGWTL-------------FSPD---------EVSDLHDLYGK 516
           I  L      F      +                  F P               +D+   
Sbjct: 303 IKRLIQEKLKFTPLSEVDESMYQSIVNYKAIEGQGGFDPKVIRQAEDTLRAGGKYDVNNS 362

Query: 517 EF--------------------EIAYE----------NYERQADRGEIK----------- 535
           EF                    +  YE            E +A   E             
Sbjct: 363 EFLTGANISVCITKEFMDAVEQDRDYELRFPDVENYNEKEMEAYNREWHEYGDVREWEQL 422

Query: 536 -----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
                 +RKI A  LW  +      +  P I F D  N  +     G  V ++N C E  
Sbjct: 423 GFGIRTYRKIKARELWELINICATYSAEPGIFFIDNANEMTNASAYGQKVVATNPCGEQP 482

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNL ++NL  +A       D++KL  T+ T VR+ DNVID   + +++  
Sbjct: 483 LAP----YSVCNLAAVNLAEMADRTTKTVDFEKLKQTVATGVRMQDNVIDATPYFLQENT 538

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R +GLG+MG    L      Y S    E+ D+  E I+  A   SVE+A+E+G+
Sbjct: 539 DQAKGERRVGLGVMGLHDLLIHTETTYGSEAGNELVDQIFETIAVTAYRESVEIAKEKGS 598

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +   +GS  ++  F          +RD        +   ++L + ++  G+RNS+ + +A
Sbjct: 599 FPFLEGSNTEETAF----------LRDRFTQTGYMKKMPEDLLEDIRAYGIRNSHLLTVA 648

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P +   Y +S   G F  V + ++ +                  
Sbjct: 649 PTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKAQILQDYLDE-------------- 694

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                + E   D L +   ++ E+ P    +     Q+W+D + S  +   +  +  ++ 
Sbjct: 695 -----HPEVSSDQLPEWFISSMELTPEAHADVQCVIQRWVDSSLSKTVNAPKGYTVDQVK 749

Query: 887 FIYRQAWLMGLK--TTYYLRSRSAT------------SVEKSTLKGVDGKLNAVPVTDPN 932
            +Y + +  G K  T Y   SR +             +V+ +  +    +   V + +  
Sbjct: 750 RVYERLYNGGAKGGTVYVDGSRDSQVLTLKAEENDEYTVDLTGGETESEEKKTVMLVETI 809

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
           +   S  +         C VC
Sbjct: 810 TDLRSTSVTYGSEVGNTCPVC 830


>gi|320332670|ref|YP_004169381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
 gi|319753959|gb|ADV65716.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
          Length = 976

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/646 (22%), Positives = 247/646 (38%), Gaps = 93/646 (14%)

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLF--NSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
             + +KE  A+  +  +   H +     +    +G    +     + TV DD+ GI  A 
Sbjct: 168 QPDGDKEATAIRNWTRVVYGHAIPQDLVVLARQNGVTIVRALPEGILTVQDDMGGIIDAA 227

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVAND------------- 433
           ++ +  AK       D + +R  GA I G+ G S G + FL ++ ++             
Sbjct: 228 RQVSETAKLGLEPRIDLSGMRPEGAPIKGSGGTSSGPVSFLVEIFDNFLEWANRGAETSG 287

Query: 434 -----------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNT 481
                          V QGG R+GA  A +   H DV +FL  +    +         N 
Sbjct: 288 PINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHADVLDFLTAKDLDREASEGDISTFNI 347

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKV 536
           +  + + F   +  N  W + + D     +       +   F    E  E    RG    
Sbjct: 348 SILVDEAFWATLQANGLWAIPAQDVPGKYYLEPQKGKFSGSFPELPERAE-DGARGVPTY 406

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSS 593
             KI A  LWR++    + TG P + F D  N  S  +++G    + S+N C EI L   
Sbjct: 407 GGKIPAAWLWREIAQHAWSTGEPGLIFVDRINEYSALKNLGERYQIKSTNPCGEIPLTVG 466

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                 C+LG+INL A+   + FDY    + +RT VR LD+V+D+N   +E  ++++ + 
Sbjct: 467 EP----CDLGAINLAAYVKGSDFDYAAFRADVRTTVRFLDDVLDVNVFALEDNREASQSL 522

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+MG   AL  + + Y +        E M  +   AI+ S  L  ERG Y  +  
Sbjct: 523 RRLGLGVMGLADALIKMGLRYDNEAGRTAIFEIMSALREEAIAESERLGAERGVYRVY-- 580

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                             E   ++     RN   + +APT T +
Sbjct: 581 ---------------------------------TENADKIPHAPRRNVAVLTVAPTGTTS 607

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR---------DLWDEAMI-SD 823
            + GVS  I+P +     +   S    +++   V  L+             WD   +   
Sbjct: 608 MLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLETYPPAANMDVDGKWDWDKVTEA 667

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSLNLY- 876
           +  + GS+  +  IPD L+++   A +I P+  +      Q+  D       + S  +  
Sbjct: 668 VSENHGSVVGLSFIPDALQQVFVCAHDIKPLDHVRMQGAVQRAFDAEGYAANSLSKTINL 727

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            ++ + + +   Y +A+  G K     R  S      ST K    K
Sbjct: 728 PNDATVQDVQDAYTEAYRTGCKGITVYRDGSRQFQVLSTSKKKAKK 773



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 45/221 (20%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
            F+     I   +Y    +G         F RVA  +A  E    +E  A  +++L++  
Sbjct: 12  NFDENAHHIAKRQYMQPTDGDLA----GLFRRVATWVAGAEAPEAREHWAQAYFDLMAEK 67

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      +  +GT+H  + +CF+       P    GI    ++ A++ K  GG G +  
Sbjct: 68  KFCPGGRVMAGAGTQHGNVLNCFVQGATEHDPSSFAGIMEVAKKLALVTKVGGGNGVNLD 127

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-- 463
               +      ++    GV  +                      AY+   H DV +F+  
Sbjct: 128 ----VYTPRAPSSRPDAGVRGW----------------------AYMSAAHPDVTDFIEG 161

Query: 464 ---DLRKNTGDDR----RRTHDMNTANWIPDLFMKRVTQNA 497
                 +  GD      R    +   + IP   +    QN 
Sbjct: 162 MMRPPTQPDGDKEATAIRNWTRVVYGHAIPQDLVVLARQNG 202


>gi|258544276|ref|ZP_05704510.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258520514|gb|EEV89373.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 555

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/621 (24%), Positives = 258/621 (41%), Gaps = 112/621 (18%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L  +G+    P+A    +A   A    + +  A  F++ ++  ++  S+P   N
Sbjct: 22  LQRGYLL--DGT---TPEARIRAIAEH-AGNILQDDTFAERFHHYMARGYYSLSSPIWSN 75

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            G       SCF + + D +Y I     E  M++K  GG    +  +R  G+ I   NGK
Sbjct: 76  FGLSRGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIGGGTSAYFGAIRPRGSDISN-NGK 134

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S G   F K+ +     ++QG  RKG    Y++  H D++E+LD+      +      M 
Sbjct: 135 SDGSFNFSKLFDTIIDVISQGTSRKGQFAGYIDIDHGDIDEWLDIHT----EGNPIQLMY 190

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               I + +++ +                                               
Sbjct: 191 YGVCISNAWLESMKAGDP------------------------------------------ 208

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEET 597
               +W K+L    ETG P++ FKD  N   P  +      V++SNLCTEI L +S EE+
Sbjct: 209 EKRRVWAKVLQRKAETGIPYLFFKDNANAGRPDVYKDRNMTVYASNLCTEIMLPASDEES 268

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI------NCHTIEKAKKSNH 651
            VC L S+NLL       FD  K         + LD V+            +++A +   
Sbjct: 269 FVCCLSSMNLL------YFDEWKHTDAPELLTQFLDAVMSEFIEKSAEIPFLDRAHRFAK 322

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HRA+GLG++G+ S L    I + S  A++  +E  +                       
Sbjct: 323 RHRALGLGVLGWHSYLQANRIAFDSFAAMQKNNEIFQL---------------------- 360

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                        ++     +  +               + +K  G RN+  ++IAPT +
Sbjct: 361 ---------LQEKTLAASKALAAKFGEP-----------ELLKGYGRRNTTLLSIAPTKS 400

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + I G VS S++P   N +VK       T  N FLV  LK++ + +E     +  +DGS
Sbjct: 401 SSFILGSVSPSVEPFKSNYHVKDLAKIKTTYKNPFLVELLKEKGIDNEKTWESILLNDGS 460

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIY 889
           + ++  + D+ K+I  T  EI  + +I+ A++RQK+IDQ QS+N+ +   +  + ++ +Y
Sbjct: 461 VQHLAALNDEEKEIFKTFAEISQLAVIQQAAQRQKYIDQGQSINVMIHPDTPTRDINQLY 520

Query: 890 RQAWLMGLKTTYYLRSRSATS 910
             A  +GLK+ YY  S SA  
Sbjct: 521 LTAAELGLKSIYYQHSMSAAQ 541


>gi|238613293|ref|XP_002398406.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
 gi|215474876|gb|EEB99336.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
          Length = 319

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/315 (41%), Positives = 183/315 (58%), Gaps = 6/315 (1%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+  + TA  V+QG  KR GA   Y+E WH D+  F+DLRKN G +  R
Sbjct: 2   TNGYSNGIVPMLRFYHATARYVDQGGNKRPGAFAMYIEPWHADIFAFIDLRKNHGKEEVR 61

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV   A W+L  P+E   L D+YG EFE  YE YER+    E  
Sbjct: 62  ARDLFYALWIPDLFMKRVEAGANWSLVCPNEAPGLPDVYGAEFEALYEKYEREGRARE-- 119

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
               I A  LW  +L    ETG P++ +KD  N +S Q+++GV+ SSNLCTEI   SS +
Sbjct: 120 ---SIPAQKLWYAILEAQVETGTPFMCYKDHANSKSNQKNLGVIKSSNLCTEIMEYSSPD 176

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           ETAVCNL S+ L       +F++ KL    +     L+ +ID+N + + +A++SN  HR 
Sbjct: 177 ETAVCNLASLALPTFVHKGEFNFKKLHDVAKVVAFNLNRIIDVNYYPVPEARRSNMRHRP 236

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L +P+ SPEA  +  +  E I + A+ AS+++A++ G Y ++ GS 
Sbjct: 237 IGIGVQGLADTFMALRLPFESPEAKLLNIQIFETIYYAALDASLDIAEKDGPYETWMGSP 296

Query: 716 WDQGVFPIDSIGLLA 730
             QG    D  G+  
Sbjct: 297 AQQGPMQYDIGGVTP 311


>gi|226355314|ref|YP_002785054.1| ribonucleoside-diphosphate reductase [Deinococcus deserti VCD115]
 gi|226317304|gb|ACO45300.1| putative ribonucleoside-diphosphate reductase [Deinococcus deserti
           VCD115]
          Length = 996

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 145/629 (23%), Positives = 237/629 (37%), Gaps = 96/629 (15%)

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +G    +     +  VPDD+ GI GA ++ A  AK S     D + +R  GA I G+ G 
Sbjct: 200 NGVSVVRALPEGVQPVPDDMAGIIGAARKVAEDAKLSLEPRIDLSSMRPEGAPIKGSGGT 259

Query: 421 SQGVIPFL-KVAND------------------------TAVAVNQGGKRKGAVCAYLETW 455
           S G + FL ++ ++                            V QGG R+GA  A +   
Sbjct: 260 SSGPVSFLLEIFDNFLEWANRGAEQSGPINTLRFVYAPVLRVVRQGGTRRGAGMATISIE 319

Query: 456 HIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL- 513
           H DV +FL  +    +         N +  +   F   +     W + +  EV   + L 
Sbjct: 320 HPDVLDFLTAKDLDREAAEGDISTFNISILVSSAFWDTLQAGGVWPVAAQ-EVPGKYYLA 378

Query: 514 -----YGKEFEIAYENYERQADRGEIKVFRK----ISAVALWRKMLTMLFETGHPWITFK 564
                +           E  A    +   R     I A  LW ++    + TG P + F 
Sbjct: 379 RQEGKFSGTLPELPVRAEDDARGVPVYTLRGGKTGIPAQWLWNEIAQHAWSTGEPGLIFN 438

Query: 565 DPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           D  N  S  +++G    + S+N C EI L         C+LG+INL A+   + FDY   
Sbjct: 439 DRVNEFSALKNLGARYEIRSTNPCGEIPLTVGEP----CDLGAINLAAYVKGSDFDYPTF 494

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + +RT VR LD+V+D+N   +E  + ++   R +GLG+MG   AL  + + Y +    +
Sbjct: 495 RADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKMGLRYDNEAGRQ 554

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
              E M  +   A++ S  L QERG Y  ++                             
Sbjct: 555 AISEIMGALRDEAVAESERLGQERGVYPVYERHP-------------------------- 588

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                     +V     RN   + +APT T + + GVS  I+P +     +   S    +
Sbjct: 589 ---------GKVPHAPRRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRAL 639

Query: 802 VNSFLVNEL---------KQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           ++   V  L          Q D WD   +   +  + GS+  +  IPD L+++   A +I
Sbjct: 640 LHPLFVELLSSYPPASGMAQGDGWDWDKVTEAVSENHGSVVGLPFIPDALQQVFVCAHDI 699

Query: 852 DPMWLIESASRRQKWID------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            P+  +      Q+  D       + S  +   +  + + +   Y +A+  G K     R
Sbjct: 700 KPLDHVRMQGAVQQAFDAEGFAANSLSKTINLPNNATVQDVQDAYTEAYRTGCKGITVYR 759

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
             S      ST K  + K    P      
Sbjct: 760 DGSRQFQVLSTSKKKEKKAEDQPAQAAAE 788



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 40/180 (22%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
            F+     I   +Y    +G         F R+A  +A  E E  +E  A  +++L++  
Sbjct: 11  NFDENAQHIAKRQYLQPTDGDVG----GMFRRIANWVAGAEQESVREHWAQAYFDLMAEK 66

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+       P    G+    ++ A++ K  GG G +  
Sbjct: 67  KFCPGGRVLAGAGTQHGNVLNCFVQGATEHEPSSFEGVMEVARKLALVTKVGGGNGVNLD 126

Query: 406 --PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
               R  G+          GV  +                      AY+   H DV++F+
Sbjct: 127 VYHPRSEGSR------PDAGVRGW----------------------AYMSAAHADVQDFI 158


>gi|196230496|ref|ZP_03129358.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
 gi|196225426|gb|EDY19934.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
          Length = 1043

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 136/626 (21%), Positives = 246/626 (39%), Gaps = 57/626 (9%)

Query: 348 SFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++ +   T     + T++  PQ S+CF+ +V D++  I       AML KY  G G+D +
Sbjct: 180 NYFYNHKTGQAQRAATQYEYPQGSACFIQSVDDNMEDIMRLAMSEAMLFKYGSGTGSDLS 239

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLD 464
            +R     +    G+  G + FLKV +  A  V  GGK R+ A    L+ WH D+EEF++
Sbjct: 240 TLRSTREKLS-GGGRPSGPLSFLKVYDQVANVVKSGGKTRRAAKMNTLKDWHPDIEEFIE 298

Query: 465 LRKNTGDDRRRTHDMNT-ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            +           +     ++  D +   + QN   ++   DE  +   + GKE+     
Sbjct: 299 AKTKEEKKAWALIEQGYDGSYNGDAYGSIMYQNENLSVRVSDEFMNAA-VEGKEW----- 352

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            + ++   G+    ++  A AL RK+       G P + F    +     +  G  +S+N
Sbjct: 353 -WTKRVTDGKPCEKKE--AKALLRKIAEGTHLCGDPGVQFDTTIDKWHTCKGTGRQNSTN 409

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C+E     ++     CNL S+NLL     +  FD ++  + +R  +   + ++D   + 
Sbjct: 410 PCSEYLFLDNT----ACNLASLNLLKFKKADGGFDVERFKAAVRVFITAQEIIVDNASYP 465

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           I++  +++H  R +GLG     + +    + Y + E   +A      ++ HA   S +LA
Sbjct: 466 IKEIAENSHIFRTLGLGYANLGALIMSYGLGYDTDEGRALAGAITSIMTGHAYEQSAKLA 525

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG----------------LLAEVRDELAMNRTSRLPW 746
           +  G +  +K +        +DS                   + +      +   ++  W
Sbjct: 526 KTMGPFPGYKDTRASGVKKTVDSTNESYMLEVIDLHRSHVSRIQDSDRFGYLKEEAQKCW 585

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D    + K  G RN+    +APT TI  +    +  I+P    +  K    G    + + 
Sbjct: 586 DGALAQGKKHGYRNAQVTVLAPTGTIGFLMDCDTTGIEPDIALVKYKLLAGGGMLKIVNQ 645

Query: 806 LVNELKQRDLWDEAMISDLKYH--------DGSIGNIERIPDDLKKIHATAFE------- 850
            V    Q   +  A I  +  H        D +  +   IP  LK  H   F+       
Sbjct: 646 TVKPALQNLGYSFAEIEGVVAHIDKFDTIEDVTDEDGTTIPSGLKPEHLPVFDCAFKPHR 705

Query: 851 ----IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               +     I   +  Q ++  A S  +   +E + + +   Y + W +GLK     R 
Sbjct: 706 GSRSLHYRGHIRMMAAAQPFLSGAISKTVNLPEEATVEDIVNTYVEGWQLGLKAIAIYRD 765

Query: 906 RSATSVEKSTLKGVD-GKLNAVPVTD 930
            S  S   +  K  D G   AV   D
Sbjct: 766 GSKRSAPLNVKKTKDMGTAEAVSDVD 791


>gi|90407599|ref|ZP_01215780.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90311302|gb|EAS39406.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 557

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 159/607 (26%), Positives = 261/607 (42%), Gaps = 121/607 (19%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  + +  +  S+P   N G       SCF +++ DD+  I     E  M++K  GG 
Sbjct: 46  KFYGYMEAGFYSLSSPVWSNFGKDSGLPVSCFGSSITDDIGNILFTEAEVGMMSKLGGGT 105

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA I   NG S G   F+++       V+QG  R+G   AYL   H D  
Sbjct: 106 SAYFGHLRHRGATIKN-NGVSSGAPHFMQLFETMVDVVSQGSVRRGRFAAYLPIEHKDAN 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD+    G +     ++     + D +++++ +                         
Sbjct: 165 EFLDI----GSEGNVIQNLTHGITVTDAWLQKMIEGD----------------------- 197

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVG 577
                            +++    LW K++    E G+P+I F D  N     + ++H  
Sbjct: 198 ---------------KEKRV----LWAKVIQRRNEMGYPYILFSDNANNQTVDTYKKHDL 238

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +++SNLCTEI L +  + + VC L SINLL +      +  K    + T +  LD V+ 
Sbjct: 239 KINASNLCTEIMLPAHDKWSFVCVLSSINLLHY------EKWKDTDAVETLIYFLDAVVT 292

Query: 638 INCHTIEKAKKSNHT------------------HRAIGLGLMGFQSALHLLHIPYASPEA 679
                +E+ + SN                    +RA+G+G++G+ S L    +P+   +A
Sbjct: 293 EFLDKLEEYRDSNERADQLVFLFMEKAYNFCKSNRALGMGVLGWHSLLQQEMLPWEGRDA 352

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  E  + I   +  AS  LA + G  S  +G                          
Sbjct: 353 AKLNLEIFKLIKQKSYQASASLADKFGEPSILEG-------------------------- 386

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798
                            G RN+   AIAPT + A I G VSQ I+P + N YVK      
Sbjct: 387 ----------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNCYVKDISKIK 430

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            T+ N FL   L+++    + +  D++ HDGS+ +++ + ++ KK+  T  EID M +I+
Sbjct: 431 TTIKNPFLEKLLEEKGFNTKQVWLDIRDHDGSVQHLDFLTEEEKKVFKTFPEIDQMSIID 490

Query: 859 SASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATS---VEKS 914
            AS RQ +IDQ QSLNL +   +  K ++ +Y  AW MG+K+ YY  S +A      ++S
Sbjct: 491 QASTRQTYIDQGQSLNLMIHPDTPVKDINQLYLSAWKMGIKSLYYQHSMNAAQKLNQQRS 550

Query: 915 TLKGVDG 921
             K  +G
Sbjct: 551 NCKACEG 557


>gi|254974806|ref|ZP_05271278.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255092194|ref|ZP_05321672.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255313933|ref|ZP_05355516.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|260682868|ref|YP_003214153.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260686466|ref|YP_003217599.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
 gi|306519825|ref|ZP_07406172.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-32g58]
 gi|260209031|emb|CBA62135.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260212482|emb|CBE03396.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
          Length = 729

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 151/691 (21%), Positives = 272/691 (39%), Gaps = 88/691 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE+   + +K     +   +CL  E     +E  +      +    + L          +
Sbjct: 36  RELAYDISRKIANDYNSMEKCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTK 95

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            + F+ L   I  ++Y    NG   E    +  R++       + +  + +     L + 
Sbjct: 96  AWEFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAG 145

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R 
Sbjct: 146 RILANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRP 204

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA ++     + G + F+++ + T   + Q G R+GA+   ++  H ++EEF+D++   
Sbjct: 205 KGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEEFIDIKT-- 261

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D  +    N +  + D FM+ V +                 LY   FE+         
Sbjct: 262 --DLEKVTKANISIRVTDEFMQAVREK---------------KLYNCTFEVETTG----- 299

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
                K+ + ++A  L+ K +   ++   P I F D     +             N C E
Sbjct: 300 ----EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNFCFSGVNPCAE 355

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NC 640
             L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N 
Sbjct: 356 EPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNL 411

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  
Sbjct: 412 HPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSAL 471

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A+E G +S +K     +  F I+++                    ++ K+ VK  G+RN
Sbjct: 472 IAKEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRN 512

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  + I PT +I+ + G+S  I+P +   Y++                 L   D++ +  
Sbjct: 513 SQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVY 559

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E
Sbjct: 560 TPIVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFE 617

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + + +  IY +AW  GLK     R     S
Sbjct: 618 TTVEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRT 208
           S  D+       +RT
Sbjct: 174 SIEDIFDTAKKLART 188


>gi|317128403|ref|YP_004094685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473351|gb|ADU29954.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
          Length = 855

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 159/741 (21%), Positives = 270/741 (36%), Gaps = 131/741 (17%)

Query: 311 GSRIE-MPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TR 364
              +E   +    R A GLA  E + +K+     +FY+ L + +F+ +   L+ +G  T 
Sbjct: 123 DKPLEVYYEQIAKRNARGLAEVEVDPQKQVESFEKFYHELVNMNFVPAGRVLYGAGAETD 182

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R   A   G NGKS G 
Sbjct: 183 VTYFNCYVMPFVADSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNALARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT-------- 476
           + +L         V QGG R+GA    L  WH D+ EF+  +       R          
Sbjct: 243 VSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLLENTEDAQ 302

Query: 477 -----------------------------HDMNTANWIPDLFMKRVTQ------------ 495
                                        H   T  + P +  +   +            
Sbjct: 303 IQRLIKEKLSFTPLSELDEAMYQSIVNYKHIPGTGGFDPKIIREAEEKLSTGGTYSVNNS 362

Query: 496 ----NAGWTLFSPDEVSDLHDL---YGKEFEIA--YENYERQADRGEIK----------- 535
                A  ++    E  +  D    Y   F     Y   E +A   E             
Sbjct: 363 EFLTGANISVCITKEFMEAVDNDEDYALRFPDVENYNEKEMEAYNREWHEYGDVREWEAL 422

Query: 536 -----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
                 +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  
Sbjct: 423 GFGVRTYRNIKAKELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQP 482

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNL ++NL  +A   N   D+ KL  T+ T VR+ DNVID   + +E   
Sbjct: 483 LAP----YSVCNLAAVNLAEMADKDNKVVDFKKLEQTVATGVRMQDNVIDATPYFLEDNT 538

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R +GLG+MG    L      Y S E   + D+  E I+  A   S+ELA+E+G+
Sbjct: 539 KQAKGERRVGLGVMGLHDLLIYTETVYGSEEGNALVDKIFETIATTAYRTSIELAKEKGS 598

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +    G+   +             +R +       +   +++++ +   G+RNS+ + +A
Sbjct: 599 FPYLVGNNEQE----------TNHLRMKYINTGYMKKMPEDVRQGILQYGIRNSHLLTVA 648

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P +   Y +S   G F  V + ++    +R              
Sbjct: 649 PTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEILQSYLER-------------- 694

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                + E  P++L +   ++ E+ P    +     Q+W+D + S  +      +  ++ 
Sbjct: 695 -----HPEADPNELPEWFVSSMELSPEAHADVQCVIQRWVDSSLSKTVNAPRGYTVDQVK 749

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATS------------VEKSTLKGVDGKLNAVPVTDPN 932
            +Y + +  G K  T Y   SR +              VE +     D +   V + D  
Sbjct: 750 KVYERLYKGGAKGGTVYVDGSRDSQVLTLKAEENDMYAVELAGEPEQDTEKKPVVLVDTI 809

Query: 933 SSTHSLGIPSSCTSDTECEVC 953
           +   S  +         C VC
Sbjct: 810 ADVRSTSVTYGSEVGDTCPVC 830


>gi|87306454|ref|ZP_01088601.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
 gi|87290633|gb|EAQ82520.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
          Length = 1002

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 135/624 (21%), Positives = 230/624 (36%), Gaps = 72/624 (11%)

Query: 349 FHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           + +  +    T       +PQ S+CF+  V DD+  I       AML KY  G G D + 
Sbjct: 156 WRWNPAAMQATCDADAYAYPQASACFIQGVQDDMQSIMSLAAAEAMLFKYGSGSGTDLST 215

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDL 465
           +R     +    GK  G + F++V +  A  V  GGK R+ A    L+  H D+ +F+  
Sbjct: 216 LRSRH-EVLSGGGKPSGPLSFMRVYDQVAGVVKSGGKTRRAAKMQSLKIEHPDILDFIQC 274

Query: 466 RKNTGDDRRRT--------------------HDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           +       R                       + N +  + D FM+ V Q+  W      
Sbjct: 275 KAKEEAKARILIEHGGYDADFNGEAYNSILFQNANLSVRVSDPFMEAVEQDQPWKTHWIT 334

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +  +    Y                           A  L ++M    ++ G P + +  
Sbjct: 335 KPDNEGPQY--------------------------PARELLQQMAESAWQCGDPGVQYDT 368

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLAST 624
             N        G +++SN C+E        + + CNL S+NL+   A +  FD  + A+ 
Sbjct: 369 TINAWHTCPQAGRINASNPCSEYMFL----DDSACNLASLNLMRFRAADGTFDASRFAAA 424

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            R      + ++D   +      +++H  R +GLG     S L    +PY S  A     
Sbjct: 425 CRLLFLAQEILVDHAGYPTATIAENSHRFRPLGLGYTNLGSLLMASGLPYDSDSARGTCA 484

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSR 743
                +   A+  S E+A  RGA++ F  +  D           L EV++  A +++ +R
Sbjct: 485 VITAILHGAALRTSSEIAASRGAFAGFAENREDMLTVIDKHAAALGEVKNAPANLSQFAR 544

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             W +++   +  G RN+    +APT TI+      +  I+P       K    G    +
Sbjct: 545 ELWGQVQIAGQRDGFRNAQATVLAPTGTISFFMDCDTTGIEPELALSKTKRLAGGGSLQI 604

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD----DLKKIHATAF-------EI 851
            +  V        +    I  +  + G  G++   PD    DL      AF        I
Sbjct: 605 VNQTVKLGLAALGYSPTQIDAIADYLGRTGSLTGAPDLRESDLPT-FDCAFPAEPGGRAI 663

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                ++  +  Q ++  A S  + +  E +   +   YR  W +GLK+    R  S  S
Sbjct: 664 SWQAHVQMMAAAQPFLSGAISKTVNMPQEATPDDIAEAYRWGWKLGLKSLSIYRDNSKQS 723

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSS 934
              S   G D   +A   + PN +
Sbjct: 724 QPLSA--GDDKPSSAAHASQPNRA 745


>gi|162135089|ref|YP_001595830.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513936|emb|CAO77762.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 580

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 133/672 (19%), Positives = 232/672 (34%), Gaps = 137/672 (20%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFL-TTVPDDL 380
           R+A  L     + ++   +F + L    F+ +       G TR     +C++  T+ D  
Sbjct: 3   RIAAAL----KDDDQHFADFRDALLGMRFLPAGRIQSAMGSTRQVTPYNCYVSGTINDSF 58

Query: 381 YGIFGALQ----ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
               G++     E A   +  GG+G D++ +R  G  I      S G I F+ + +    
Sbjct: 59  VDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIRKLQSHSSGPISFMHIFDAICK 118

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD------------------------- 471
            V   G R+GA    +   H D+EEF+  ++   D                         
Sbjct: 119 CVASSGHRRGAQMGVMRVDHPDIEEFIHAKQPGKDVQPLWDLVAELPEGAQKQQLIMSLQ 178

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              +    N +  I D FM+ V     + L                              
Sbjct: 179 QTLKLTGFNVSVAITDKFMECVASGEPFPLTF---------------------------- 210

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E + +R++ A ALW  ++   ++   P + F D  N  +   +   + ++N C E  L 
Sbjct: 211 -EGRTYREVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATNPCGEQPLP 269

Query: 592 SSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   C LGS NL+ +   +      FD+D+    I   VR +DNV+D   + + + 
Sbjct: 270 P----YGACLLGSFNLVKYIYKDGAGCFAFDWDQYREDIPQVVRAMDNVVDRAIYPLPQQ 325

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K+     R +GLG+ G  +A   L   Y SP  +    E ++ +   +  AS  +A+ +G
Sbjct: 326 KQEAKDKRRMGLGITGLANAAEALGHEYGSPAFLAFEAEVLDTLRDESYLASAHIAKVKG 385

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           ++  F    + QG F                  +T R     ++  +   G+RNS+  +I
Sbjct: 386 SFPKFDKDKYLQGQF-----------------IKTLRED---VRDAIAKYGIRNSHLTSI 425

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+      S  I+P +   + ++ +      V    V +   R            
Sbjct: 426 APTGTISLCADNVSSGIEPVFAYSFDRTVIEFSGPRVE--TVEDYGARVFGVRG------ 477

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKK 884
                                T   +     + + +   + +D A S    +    S + 
Sbjct: 478 --------------------KTCSRVTVQEHVAALTVAAQRVDSAVSKTCNVPSDISWED 517

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
              +Y  AW  G K     R     S     +K   G        +P +   +    S C
Sbjct: 518 FKNVYVSAWEGGAKGCTTFRLGGKRSGIL-VVKDDGG--------EPEADAPAEEPASQC 568

Query: 945 TSDT-----ECE 951
             D      ECE
Sbjct: 569 RIDPATGRRECE 580


>gi|296451257|ref|ZP_06892997.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296880391|ref|ZP_06904354.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
 gi|296259863|gb|EFH06718.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296428632|gb|EFH14516.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
          Length = 729

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 143/629 (22%), Positives = 253/629 (40%), Gaps = 88/629 (13%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F+ L   I  ++Y    NG   E    +  R++       + +  + +     L +   
Sbjct: 98  EFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAGRI 147

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R  G
Sbjct: 148 LANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRPKG 206

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A ++     + G + F+++ + T   + Q G R+GA+   ++  H ++EEF+D++     
Sbjct: 207 AKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEEFIDIKT---- 261

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D  +    N +  + D FM+ V +                 LY   FE+           
Sbjct: 262 DLEKVTKANISVRVTDEFMQAVREK---------------KLYNCTFEVETTG------- 299

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEIT 589
              K+ + ++A  L+ K +   ++   P I F D     +             N C E  
Sbjct: 300 --EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNFCFSGVNPCAEEP 357

Query: 590 LNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NCHT 642
           L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N H 
Sbjct: 358 LPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNLHP 413

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  +A
Sbjct: 414 LQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSALIA 473

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E G +S +K     +  F I+++                    ++ K+ VK  G+RNS 
Sbjct: 474 KEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRNSQ 514

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            + I PT +I+ + G+S  I+P +   Y++                 L   D++ +    
Sbjct: 515 LLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVYTP 561

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E +
Sbjct: 562 IVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFETT 619

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + +  IY +AW  GLK     R     S
Sbjct: 620 VEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +D+  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RDLAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRT 208
           S  D+       +RT
Sbjct: 174 SIEDIFDTAKKLART 188


>gi|239996351|ref|ZP_04716875.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 367

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   +G   S + +++  +V  A  GL++VS   V  +     YDG++ S++  
Sbjct: 1   MNNNLLVTKRNGEKESIDLEKIHKVVTWAAKGLKNVSVSQVEIKAQIQFYDGINTSEIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI S+  LI  + P+Y  + AR  +  LR++                      E+  + 
Sbjct: 61  TLIKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALL-----------EHVGKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           ++ G   + L E     +   + + + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VDMGKYDKHLLEDYTPEEFAEMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYILVAACLFANYDKATRMDYIRRFYDAASTFKLSLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 230 TGDSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAV 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +
Sbjct: 290 KSCSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMK 349

Query: 496 NAGWTLFSPDEVSDLHDL 513
           +   +LFSP +V  L+D 
Sbjct: 350 DGYISLFSPSDVPGLYDA 367


>gi|298244257|ref|ZP_06968063.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
 gi|297551738|gb|EFH85603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
          Length = 1225

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 112/502 (22%), Positives = 200/502 (39%), Gaps = 82/502 (16%)

Query: 442  GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
              R+GA+   L+  H D+EEF+ ++K  G         N +  + D FM+ V  +A W L
Sbjct: 615  NSRRGALMLMLDDNHPDIEEFITVKKKAGM----IEHANLSVCVSDAFMQAVKDDADWNL 670

Query: 502  FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
                EV                              + + A  LW  + T  +E+  P +
Sbjct: 671  VWQGEVK-----------------------------KTLKARHLWDLICTSAWESAEPGV 701

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
             F D  N  S   +   +   N C E  L   +    VCNLG++N+ A  ++   D+ +L
Sbjct: 702  VFMDRYNKESNTWYYETIRCVNPCGEQGLGPWN----VCNLGALNVAAFVSDGAMDWQRL 757

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A   + ++R LDNVID   +  ++ +++    R  GLG MG   AL  + I Y S  ++ 
Sbjct: 758  AEISKVSMRFLDNVIDATDYFFDENREAQLGTRRTGLGTMGLADALIKMKIAYGSEASIP 817

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            + +     I   A  AS E+A E+G +  F+   + QG F    I  L +          
Sbjct: 818  VIERIYSTIRDSAYEASTEIAAEKGPFPRFERDKYLQGKF----IKRLPK---------- 863

Query: 742  SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                   L++++K  G RN+  +  APT T + + GVS  I+P +    ++ + +G+  +
Sbjct: 864  ------SLQEKIKKHGTRNAVLLTQAPTGTTSLLSGVSSGIEPVFDFAMIRRDRTGEHIL 917

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
             +  L         W +A  +                        ++ ++ P   I   +
Sbjct: 918  YHPLLQ-------AWRDAHPN----------------ASTPHYFVSSKDLSPEEHIRVQA 954

Query: 862  RRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
              Q++ D + S  +      +  +++ +YR A+ MG K   Y R  S  +V  + ++   
Sbjct: 955  TVQRYTDASISKTVNAPNNHTVDQVETLYRLAYEMGCKGVTYYRDGSRDAV-LTRIEDEK 1013

Query: 921  GKLNAVPVTDPNSSTHSLGIPS 942
             +  A    +         + S
Sbjct: 1014 KQKQATGDANETQGLMMEPVTS 1035



 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMC 353
           ++  DRY L    G  +E  P+  + RVA G+A  E  +EK+A     FY+ LS+F F+ 
Sbjct: 35  KVFMDRYSLKDATGQPLEFYPEDMWKRVARGIAAVEQGEEKQAFWEERFYDALSNFQFVP 94

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
               L  +GT H     +CF+   P D   GI   L+    +    GG+G + + +R  G
Sbjct: 95  GGRILAGAGTGHQVTFYNCFVVPSPEDSRQGILENLKVMTEIMARGGGVGINLSTLRPRG 154

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           ++I   NG + G   + ++ +     V Q 
Sbjct: 155 SYIKTVNGTASGPCSWAQLYSVATGDVIQQ 184


>gi|149408275|ref|YP_001294554.1| hypothetical protein ORF046 [Pseudomonas phage M6]
          Length = 620

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 133/680 (19%), Positives = 232/680 (34%), Gaps = 137/680 (20%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFL 373
           E  +    R+A  L     + ++   +F + L    F+ +       G TR     +C++
Sbjct: 35  ESFREAMNRIAAAL----KDDDQHFADFRDALLGMRFLPAGRIQSAMGSTRQVTPYNCYV 90

Query: 374 -TTVPDDLYGIFGALQ----ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             T+ D      G++     E A   +  GG+G D++ +R  G  I      S G I F+
Sbjct: 91  SGTINDSFVDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIRKLQSHSSGPISFM 150

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD----------------- 471
            + +     V   G R+GA    +   H D+EEF+  ++   D                 
Sbjct: 151 HIFDAICKCVASSGHRRGAQMGVMRVDHPDIEEFIHAKQPGKDVQPLWDLVAELPEGAQK 210

Query: 472 --------DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
                      +    N +  I D FM+ V     + L                      
Sbjct: 211 QQLIMSLQQTLKLTGFNVSVAITDKFMECVASGEPFPLTF-------------------- 250

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                    E   +R++ A ALW  ++   ++   P + F D  N  +   +   + ++N
Sbjct: 251 ---------EGWTYREVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATN 301

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         C LGS NL+ +   +      FD+D+    I   VR +DNV+D 
Sbjct: 302 PCGEQPLPP----YGACLLGSFNLVKYIFKDGAGRYAFDWDQYREDIPQVVRAMDNVVDR 357

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             + + + K+     R +GLG+ G  +A   L   Y SP  +    E ++ +   +  AS
Sbjct: 358 AIYPLPQQKQEAKDKRRMGLGITGLANAAEALGHEYGSPAFLAFEAEVLDTLRDESYLAS 417

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             +A+ +G++  F    + QG F                  +T R     ++  +   G+
Sbjct: 418 AHIAKVKGSFPKFDKDKYLQGQF-----------------IKTLRED---VRDAIAKYGI 457

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RNS+  +IAPT TI+      S  I+P +   + ++ +      V    V +   R    
Sbjct: 458 RNSHLTSIAPTGTISLCADNVSSGIEPVFAYSFDRTVIEFSGPRVE--TVEDYGARVFGV 515

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                            +     + + +   + +D A S    +
Sbjct: 516 RG--------------------------KACSRVTVQEHVAALTVAAQRVDSAVSKTCNV 549

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
               S +    +Y  AW  G K     R     S     +K   G        +P +   
Sbjct: 550 PSDISWEDFKNVYVSAWEGGAKGCTTFRLGGKRSGIL-VVKDDGG--------EPEADAP 600

Query: 937 SLGIPSSCTSDT-----ECE 951
           +    S C  D      ECE
Sbjct: 601 AEEPASQCRIDPATGRRECE 620


>gi|261884883|ref|ZP_06008922.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 348

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 154/331 (46%), Positives = 205/331 (61%), Gaps = 8/331 (2%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
             F YLG++ LYDRY +   N   IE+PQ  FM +AM LA  E + +  A +FY+L+S F
Sbjct: 1   MQFAYLGIKTLYDRYLIKDRNAKPIELPQHMFMAIAMFLAQNELDSQSWAKKFYDLISKF 60

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             M +TPTL N+ T   QLSSC++ + PD++ GIF + +E A+L K+ GG+G DW  VR 
Sbjct: 61  EVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLCKFGGGIGWDWCKVRA 120

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +G  I G    + G+IPFLK  ND AVAV+Q G RKGA+  Y+E WH+DV +FLDLRKN+
Sbjct: 121 MGGSIDGHKNAAGGIIPFLKDTNDIAVAVDQLGTRKGAIAVYIEPWHMDVSDFLDLRKNS 180

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G++RRR H++  A WI DLFMKR++QN  WTLF P +  DL DLYG EFE  Y  YE+  
Sbjct: 181 GEERRRAHELFPALWINDLFMKRLSQNERWTLFDPADTPDLCDLYGDEFEKRYIEYEKDP 240

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              +      + A  LW+K+LT  FETG P++ FKD  N  +P  H G++ SSNLCTEI 
Sbjct: 241 HIAKS----SMLAKELWKKILTNYFETGMPFLCFKDNANRANPNAHKGIIRSSNLCTEIF 296

Query: 590 LNSSSEET---AVCNLGSINLLAHFANNQFD 617
            N+         V + GS  L     +   D
Sbjct: 297 QNTEPNYYQTKVVFDDGSFKLFDESEDITVD 327


>gi|15615373|ref|NP_243676.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10175431|dbj|BAB06529.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           halodurans C-125]
          Length = 852

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 166/740 (22%), Positives = 273/740 (36%), Gaps = 132/740 (17%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  ET +EKR      FY  L + +F+ +   L+ +G  
Sbjct: 121 VIEKPLEIFYEQIAKRNATGLAAVETTEEKRQQSFERFYEELVNMNFVPAGRVLYGAGAK 180

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 181 TDVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 240

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGD 471
           G + +L         V QGG R+GA    L  WH DV EF+            L +NT D
Sbjct: 241 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDVLEFIISKMQNPRILRYLLENTDD 300

Query: 472 DRRR--------------THDMNTANWIPDLFM---------------KRVTQNAGWTLF 502
           D+ R                +      +    +               +++     +T+ 
Sbjct: 301 DQIRKLVKDKLKFTPLSQLEEAMYQGIVNYKSIPGMGGFDAKVIKEAEEKLRIGGTYTVN 360

Query: 503 SPD----------------EVSDLHDLYGKEFEIA--YENYERQADRGEI---------- 534
           +PD                E  D  D Y   F     Y   E      E           
Sbjct: 361 NPDFLTGANISVCLTKEFMEAVDNDDWYALRFPDVENYTEEEMDIYNREWSNVGDVREWE 420

Query: 535 ------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
                 K +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E
Sbjct: 421 ERGFPVKTYRMIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGE 480

Query: 588 ITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL +INL  +A+      D+ KL  T+   VR+ DNVID   + +E+
Sbjct: 481 QPLAP----YSVCNLAAINLAEMANKQEKTVDFKKLKQTVEVGVRMQDNVIDATPYFLEE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K     R +GLG+MG    L      Y S E  ++ D+  E I+  A   S+ELA+E+
Sbjct: 537 NTKQAKGERRVGLGVMGLHDLLIYTETVYGSEEGNKLVDQIFETIATTAYRTSIELAKEK 596

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++                +     ++R         +   +++++ V   G+RNS+ + 
Sbjct: 597 GSFP----------FLVGQTDEETKQLRQRFIGTGYMKKMPEDIRQGVLEYGIRNSHLLT 646

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P +   Y +S   G F  V + +V E  +             
Sbjct: 647 VAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEIVQEYLR------------- 693

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                  + E   + L +   +  E+ P    +     Q+W+D + S  +      + ++
Sbjct: 694 ------AHPEADENHLPEWFISTMELAPEAHADVQCIIQRWVDSSLSKTVNAPRGYTVEQ 747

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSAT---------SVEKSTLKGVDGKLNAVPVTDPNS 933
           +  +Y + +  G K  T Y   SR A          ++++  L   +     + + D   
Sbjct: 748 VQAVYERLYRGGAKGGTVYVDGSRDAQVLSLKAEENTLDEDVLAETEQSEKKIVLVDTIQ 807

Query: 934 STHSLGIPSSCTSDTECEVC 953
              +  +         C VC
Sbjct: 808 DVRTTDVTIGSEVGDTCPVC 827


>gi|82503213|ref|YP_401655.1| BORF2 [Human herpesvirus 4]
 gi|139424487|ref|YP_001129452.1| BORF2 [Human herpesvirus 4 type 2]
 gi|132602|sp|P03190|RIR1_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|238055302|sp|P0C702|RIR1_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1334856|emb|CAA24842.1| unnamed protein product [Human herpesvirus 4]
 gi|23893601|emb|CAD53405.1| ribonucleoside-diphosphate reductase large chain [Human herpesvirus
           4]
 gi|82703963|gb|ABB89232.1| BORF2 [Human herpesvirus 4]
          Length = 826

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 178/811 (21%), Positives = 291/811 (35%), Gaps = 117/811 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L + LI   +     +P    +  R     L R    +V     +         Y E
Sbjct: 8   EHELLSKLIDELKVKANSDPEADVLAGRL----LHRLKAESVTHTVAEYLEVFSDKFYDE 63

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
            F +           H   ++  +   A    YER  +  YL     YD Y       + 
Sbjct: 64  EFFQM----------HRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQ 113

Query: 315 EMPQAFFMRVA----------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           E  Q F+MR+A           GL      A  E E +    ++Y   L+S    CSTP 
Sbjct: 114 ESVQHFYMRLAGFCASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPF 173

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +  +G  +  L+SC LTT                 L ++ G     +             
Sbjct: 174 MRFAGVENSTLASCILTTPDLSSE-----WDVTQALYRHLGR--YLFQRAGVGVGVTGAG 226

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                 +   +++ N      N G KR  +V AY+E WH  + +FL       ++  R  
Sbjct: 227 QDGKH-ISLLMRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFL--ETKLPENHERCP 283

Query: 478 DMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            + T  ++P+LF K       + W LF P +  DL  LYG+EFE     Y R    G+  
Sbjct: 284 GIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFER---EYYRLVTAGKFC 340

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS 594
              ++S  +L   ++    + G P+I  K+ CN    +   G  ++++NLC E+   S  
Sbjct: 341 --GRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEVLQPSRK 398

Query: 595 EETAVCNLGSINLLAHFAN-----------------------------------NQFDYD 619
              A CNL +I L     N                                   + F   
Sbjct: 399 S-VATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAVGDGFSLA 457

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L    + A  V+   I     T +    +     ++GLG+ G       L   Y  P +
Sbjct: 458 RLRDATQCATFVVACSILQGSPTYDSRDMA-----SMGLGVQGLADVFADLGWQYTDPPS 512

Query: 680 VEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             +  E  E + F A+  S  +    R  +  FK S +  G F                 
Sbjct: 513 RSLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIP---- 568

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               R  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +
Sbjct: 569 ----REIWSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855
               N         R  W    + D +  +   G +  +P+ L++ +    TAF+ +   
Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675

Query: 856 LIESASRRQKWIDQAQSLNLY---LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
           LI+ +  R  ++DQ+QS +L+    D      L  +  +++ +GLKT  YY R   A  +
Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCRIEKAADL 735

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                K       +VP  + N  + +  +P 
Sbjct: 736 GVMECKASAAL--SVPREEQNERSPAEQMPP 764


>gi|254455135|ref|ZP_05068570.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263545|gb|EDY87817.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 535

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 137/603 (22%), Positives = 244/603 (40%), Gaps = 86/603 (14%)

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCF-LT 374
             + RVA GLA  +    ++K   +F+  +  F  +     L   GT RH  L + F + 
Sbjct: 3   ETWARVANGLAAHKALAVRDKVVTDFHAAMHDFKVLPGGRILSGCGTARHVTLCNTFVMR 62

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+PD + GI   L++ A+  +  GG+G D++ +R  G  + G + ++ G +  + + + T
Sbjct: 63  TIPDSVDGIMDTLKDAALTMQMGGGVGFDFSMLRPSGTVVRGLDCRAAGPLAAMDIFDAT 122

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              +  G  R GA+ A +   H ++E F++ +     DR R  + N +    + FM  + 
Sbjct: 123 CKMIVSGMGR-GAMMATMRCDHPNIEAFINAK----SDRTRLRNFNMSVMATNEFMAAIA 177

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L                                  V R++ A  LW  ++   +
Sbjct: 178 ADETWDLVWQ-----------------------------GAVMRRLRARDLWNAIMKQTY 208

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA----- 609
               P + F D  N  +P +++ V+ ++N C E  L  +      C L SINL       
Sbjct: 209 AAAEPGVLFIDRINAVNPLRYLEVIAATNSCAEQPLPPN----GTCPLASINLAQLVSAP 264

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              + + D  +L   +R AVR+ DN +D++   ++  ++     R IG+G+ G  +A+ +
Sbjct: 265 FTTDARLDVTQLRQLVRVAVRMFDNSLDVSRFALDAQRQQAQDQRRIGVGVTGVANAIAM 324

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + + Y S +AV +    M+ I   A  AS  LA ERGA+  +                  
Sbjct: 325 MGVRYGSSKAVFLLGSWMQTIQNAAYGASALLANERGAFPLYDA---------------- 368

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788
               D+   +R  +    +++  V+  G+RN     IAPT T +     VS  I+P +  
Sbjct: 369 ----DKHLASRGIQALNQDIRALVEQHGLRNGTLTTIAPTGTTSMFAENVSSGIEPIFST 424

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + ++    +    +  +++       W  A I          G    +PD       T 
Sbjct: 425 SFTRTITKANGEKSSERVMDYAA----WQFAQIY---------GPNAALPDS----FVTV 467

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            ++ P   I   +  Q+WID   S  +   E    +    IYR A+  G K     R  +
Sbjct: 468 ADLSPDDHIAMQAAAQEWIDSGISRTVNCPEDIPFEAFKGIYRAAYDAGCKGCTTYRPNA 527

Query: 908 ATS 910
            T 
Sbjct: 528 TTG 530


>gi|255649712|ref|ZP_05396614.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 659

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/691 (21%), Positives = 272/691 (39%), Gaps = 88/691 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE+   + +K     +   +CL  E     +E  +      +    + L          +
Sbjct: 36  RELAYDISRKIANDYNSMEKCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTK 95

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            + F+ L   I  ++Y    NG   E    +  R++       + +  + +     L + 
Sbjct: 96  AWEFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAG 145

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R 
Sbjct: 146 RILANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRP 204

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA ++     + G + F+++ + T   + Q G R+GA+   ++  H ++EEF+D++   
Sbjct: 205 KGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEEFIDIKT-- 261

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D  +    N +  + D FM+ V +                 LY   FE+         
Sbjct: 262 --DLEKVTKANISIRVTDEFMQAVREK---------------KLYNCTFEVETTG----- 299

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
                K+ + ++A  L+ K +   ++   P I F D     +             N C E
Sbjct: 300 ----EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNFCFSGVNPCAE 355

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NC 640
             L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N 
Sbjct: 356 EPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNL 411

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  
Sbjct: 412 HPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSAL 471

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A+E G +S +K     +  F I+++                    ++ K+ VK  G+RN
Sbjct: 472 IAKEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRN 512

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  + I PT +I+ + G+S  I+P +   Y++                 L   D++ +  
Sbjct: 513 SQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVY 559

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E
Sbjct: 560 TPIVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFE 617

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + + +  IY +AW  GLK     R     S
Sbjct: 618 TTVEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRT 208
           S  D+       +RT
Sbjct: 174 SIEDIFDTAKKLART 188


>gi|255516612|ref|ZP_05384288.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-97b34]
          Length = 689

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/691 (21%), Positives = 272/691 (39%), Gaps = 88/691 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE+   + +K     +   +CL  E     +E  +      +    + L          +
Sbjct: 36  RELAYDISRKIANDYNSMEKCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTK 95

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
            + F+ L   I  ++Y    NG   E    +  R++       + +  + +     L + 
Sbjct: 96  AWEFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAG 145

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R 
Sbjct: 146 RILANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRP 204

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA ++     + G + F+++ + T   + Q G R+GA+   ++  H ++EEF+D++   
Sbjct: 205 KGAKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEEFIDIKT-- 261

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D  +    N +  + D FM+ V +                 LY   FE+         
Sbjct: 262 --DLEKVTKANISIRVTDEFMQAVREK---------------KLYNCTFEVETTG----- 299

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
                K+ + ++A  L+ K +   ++   P I F D     +             N C E
Sbjct: 300 ----EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNFMSEDKNFCFSGVNPCAE 355

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NC 640
             L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N 
Sbjct: 356 EPLPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNL 411

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           H +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  
Sbjct: 412 HPLQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSAL 471

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A+E G +S +K     +  F I+++                    ++ K+ VK  G+RN
Sbjct: 472 IAKEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRN 512

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           S  + I PT +I+ + G+S  I+P +   Y++                 L   D++ +  
Sbjct: 513 SQLLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVY 559

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E
Sbjct: 560 TPIVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFE 617

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + + +  IY +AW  GLK     R     S
Sbjct: 618 TTVEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRT 208
           S  D+       +RT
Sbjct: 174 SIEDIFDTAKKLART 188


>gi|255655272|ref|ZP_05400681.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-23m63]
          Length = 659

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 143/629 (22%), Positives = 253/629 (40%), Gaps = 88/629 (13%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F+ L   I  ++Y    NG   E    +  R++       + +  + +     L +   
Sbjct: 98  EFDELQKSIWKNKY--RHNG---ESFDEWIKRIS-----NNSSRISKLIRQKRFLFAGRI 147

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +       G +    +   +    D +  IF   ++ A    Y GG+G D + +R  G
Sbjct: 148 LANRGLQKE-GKKVTYSNCYVIEPPKDSIEDIFDTAKKLARTFSYGGGVGIDISKLRPKG 206

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A ++     + G + F+++ + T   + Q G R+GA+   ++  H ++EEF+D++     
Sbjct: 207 AKVNNAAKHTTGAVSFMELYSMTTGLIGQRG-RRGALMISMDVNHPEIEEFIDIKT---- 261

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D  +    N +  + D FM+ V +                 LY   FE+           
Sbjct: 262 DLEKVTKANISVRVTDEFMQAVREK---------------KLYNCTFEVETTG------- 299

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEIT 589
              K+ + ++A  L+ K +   ++   P I F D     +             N C E  
Sbjct: 300 --EKIVKIVNAYDLFNKFVKNNWDYAEPGILFWDKIKTYNLMSEDKNFCFSGVNPCAEEP 357

Query: 590 LNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDI--NCHT 642
           L S       C LGSINL          +  FD +KL S +R AV  L++V+D   N H 
Sbjct: 358 LPSGGS----CLLGSINLSEFIIQPFGEHATFDINKLKSCVREAVVALNDVLDEGLNLHP 413

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++ + S H +R IGLG+MG    L  + I Y S E++E+ D   + +   A+  S  +A
Sbjct: 414 LQEQRDSVHKYRQIGLGVMGIADMLIKMGIRYGSDESLELCDLIGKTMLNEAVKQSALIA 473

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E G +S +K     +  F I+++                    ++ K+ VK  G+RNS 
Sbjct: 474 KEYGTFSEYKYENISKSKFFIENLN-------------------EDTKEMVKKYGLRNSQ 514

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            + I PT +I+ + G+S  I+P +   Y++                 L   D++ +    
Sbjct: 515 LLTIPPTGSISTMIGISGGIEPIFNLSYIRKT-------------ESLHDEDVYYKVYTP 561

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +K +    G  +   + L     TA  I     I      QK+ID + S  + +  E +
Sbjct: 562 IVKEYMDKKGITDE--ECLPDFFVTAMNIGYEERINMQKVWQKYIDASISSTINIPFETT 619

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            + +  IY +AW  GLK     R     S
Sbjct: 620 VEDVFNIYIKAWEAGLKGVTIFRDGCKRS 648



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +D+  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGVD------RDLAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K K    
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWKNK-YRH 113

Query: 151 DGT-------LISFNSKRLEMIVEE----------ACSGLQDVSSKIVLSETYKNMYDGL 193
           +G         IS NS R+  ++ +          A  GLQ    K+  S  Y       
Sbjct: 114 NGESFDEWIKRISNNSSRISKLIRQKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKD 173

Query: 194 SESDLETALIFSSRT 208
           S  D+       +RT
Sbjct: 174 SIEDIFDTAKKLART 188


>gi|223937584|ref|ZP_03629487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
 gi|223893747|gb|EEF60205.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
          Length = 1035

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 148/707 (20%), Positives = 261/707 (36%), Gaps = 94/707 (13%)

Query: 296 LGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLA--------LKETEKEKRAVEFYNL 345
           L  +++  +YF        R    +    R+   +A          +T+ E    E   L
Sbjct: 88  LATKVVVSKYFYGEQHTPERETSVRQLIHRICRTIADWGVKDGYFSKTDGEVFFDELTWL 147

Query: 346 LSSFHFMCSTPTLFNSGTRH-------------------------------PQLSSCFLT 374
             + +   ++P  FN G  H                               PQ S+CF+ 
Sbjct: 148 CVNQYGAFNSPVWFNVGLYHQYGVGKNSGRGNWFYNRKTGEAERAVTQYEYPQGSACFIQ 207

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +V D++  I       AML KY  G G D +P+R     +    G+  G + FLKV +  
Sbjct: 208 SVEDNMEDIMHLAYSEAMLFKYGSGTGTDLSPIRSSREKLS-GGGRPSGPLSFLKVYDQV 266

Query: 435 AVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM-NTANWIPDLFMKR 492
           A  V  GGK R+ A    L  WH D+EEF+D ++          +     ++  + +   
Sbjct: 267 ANVVKSGGKTRRAAKMNTLRDWHGDIEEFIDAKQKEEKKAWALIEQGFDGSYNGEAYGSV 326

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           + QN   ++        + D +    E   E + +          +   A  L  K+   
Sbjct: 327 MYQNENLSVR-------VSDAFMTAAEAGTEWWTKSVTGNRPLEKK--DANKLMHKIAEG 377

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            +  G P + + D        +    +HS+N C+E    +++     CNL S+NL+    
Sbjct: 378 TWICGDPGLQYDDAIQKWHTCKGTEPIHSTNPCSEYVFLNNT----ACNLASLNLMKFKR 433

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD ++  + +R  +   + ++D   +  ++  +++H +R +GLG     S +    
Sbjct: 434 EDGVFDVERFKAAVRIYITAQEIIVDNASYPTKQIAENSHIYRTLGLGYANLGSLIMSYG 493

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI-------- 723
           + Y S     +A      ++ HA   S E+A   GA+  +  +       PI        
Sbjct: 494 LAYDSDGGRALAGAITAIMTGHAYEQSAEVATSMGAFKGYHDARCAHVSKPIARDNVESM 553

Query: 724 --------DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                   D++  +   R+   +   +R  WD   +R +  G RN+    +APT TIA +
Sbjct: 554 LGVIKLHRDAVEQIQPSREFHYLKEEARKTWDRALERGQKAGYRNAQVTVLAPTGTIAFL 613

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  ++P    +  K    G    + +  V E  +R  +    I  +  H      I
Sbjct: 614 MDCDTTGVEPDIALVKYKLLAGGGLLKLVNRTVPEGLRRLGYGTEAIQKIVAHVEKYDTI 673

Query: 835 ERIPDD-------LKKIHATAFE-----------IDPMWLIESASRRQKWIDQAQSLNLY 876
           E + D+       L+  H   F+           I  M  ++     Q +I  A S  + 
Sbjct: 674 EDVQDNGQAVSSGLRPEHLEVFDCAFKPYQGKRSIKYMAHLKMMGAAQPFISGAISKTVN 733

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           L  E + + +   Y QAW MGLK     R  S  S   +T K     
Sbjct: 734 LPQECTVEDIRDAYVQAWKMGLKCVAIYRDGSKRSQPLNTKKNSTEP 780


>gi|310778932|ref|YP_003967265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
 gi|309748255|gb|ADO82917.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
          Length = 750

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 142/636 (22%), Positives = 254/636 (39%), Gaps = 88/636 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y    +G   E    +  RVA G       K K  +     + +   + + 
Sbjct: 16  LGIDIWEKKY--KFDG---ETFVQWLDRVAGG-----DPKVKEMIWKKEFIFAGRILSNR 65

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                 G +    +   +T   D++  IF   ++ A    Y GG G D + +R  G+ ++
Sbjct: 66  GLH-KVGKKITYSNCYVITPPDDNIESIFETAKKLARTFSYGGGCGVDISNLRPKGSEVN 124

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            +   + G + F+ + N T   + Q G R+GA+   ++  H DVE+F+ ++     D  +
Sbjct: 125 NSAKHTTGAVSFMDLYNLTTDIIGQKG-RRGALMLSIDVNHPDVEDFIKVK----SDLNK 179

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  I D FMK V +                D++  EF                 
Sbjct: 180 IQKANISVRINDEFMKAVEKG---------------DMFKTEF---------IVGDTGET 215

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEITLNSS 593
           + +K++A  L++++    +    P + F D  +  +            +N C E  L   
Sbjct: 216 ITKKVNARLLFKELARQNWNFAEPGVLFWDTISNWNLLSEDEEFEYAGTNPCAEEPLPPG 275

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKAKKSNH 651
                 C LGSI L +      F++++LA  +R  V+ L++V+D     H +E+ + S  
Sbjct: 276 GS----CLLGSIVLPSFIEGEVFNFERLAERVRDGVKALNDVLDEGLPLHPLEEQRDSVR 331

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG++G    L  + + Y SPE++E  D+  + I  +A+ AS  LA+E+G++  +
Sbjct: 332 DWRQIGLGILGLGDLLINMKLKYGSPESLEFCDKVSKTIVDNALRASALLAKEQGSFPKY 391

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           K        F  D+                     DE  + ++  G+RNS  + IAPT +
Sbjct: 392 KKDKVLASPFLKDNAS-------------------DETIELIEKYGLRNSQLLTIAPTGS 432

Query: 772 IANICGVSQSIDPSYQNLYVKSN--MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I  +   S  I+P++   Y +    + G+      F                      D 
Sbjct: 433 IGTMLRTSTGIEPNFAFFYTRKTESLHGEDVFYKVFTP-----------------IAKDY 475

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFI 888
              N     +DL     TA  ++P   I+     Q+ ID + S  +  + + S ++++ +
Sbjct: 476 MDENGIEDENDLPDYFVTAQNLNPFDRIKMQGIWQRRIDASISSTINLVHKTSIEEVEDL 535

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           Y +AW  GLK     R+  A     S +K     L 
Sbjct: 536 YIEAWKQGLKGMTIYRAGCAREGILS-VKSEPKTLE 570


>gi|293380786|ref|ZP_06626831.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
 gi|290922650|gb|EFD99607.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
          Length = 516

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/496 (27%), Positives = 223/496 (44%), Gaps = 28/496 (5%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNDYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R LGA I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD 
Sbjct: 207 NLRELGAPIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDT 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    IPD+  +   +N    LFSP ++   +     +  I  E  
Sbjct: 267 KRENADEKVRIKSLSLGVVIPDITFELAKENKKMALFSPYDIKREYGKPMSDISITKEYQ 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               +    K F  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC
Sbjct: 327 NLLNNPRIKKTF--ISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLC 384

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   ++                  CNLGS+N+ A   +     DKL S +  +V+ L+
Sbjct: 385 SEIAQVNTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGSLVSDSVQALN 440

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V   +        +K N  +RAIGLG M     L   HI Y SPEAVE        I++
Sbjct: 441 RVARSSDLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAY 500

Query: 693 HAISASVELAQERGAY 708
           HA   S +LA+    +
Sbjct: 501 HAFKESNKLAENVWCF 516


>gi|86140896|ref|ZP_01059455.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832838|gb|EAQ51287.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 600

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 153/594 (25%), Positives = 246/594 (41%), Gaps = 120/594 (20%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY  +   +F  ++P   N G +     SCF + + DD+  I     E  M++K  GG 
Sbjct: 90  KFYKYMGEGYFSLASPVWSNFGKKRGLPISCFGSHIDDDMGNILYTQSEVGMMSKLGGGT 149

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +R  GA +   NG + G +  +++ +     V+QG  R+G    YL   H D++
Sbjct: 150 SGYFGKIRHRGAAVKN-NGYASGAVHIMQLFDKMVDVVSQGSVRRGRFSPYLPISHPDIK 208

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL++    G +      +     +   +M+ +                           
Sbjct: 209 EFLEI----GTEGNSIQQLTHGVTVDSTWMQEMIDGDT---------------------- 242

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-- 578
                                   +W K+L    E G+P+I + D  N   P  +     
Sbjct: 243 --------------------DKREVWAKVLQRRGEMGYPYIFYTDNANNGKPDVYKDKGH 282

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +++SNLCTEI L SS E + VC L SIN+L +      D  K    + T V  LD V+ 
Sbjct: 283 DIYASNLCTEIMLPSSDEWSFVCVLSSINVLHY------DKWKNTDAVETMVCFLDAVLT 336

Query: 638 INCHTIEKAKKS------------------NHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +E+ + S                    ++RA+GLG++G+ S L      + S EA
Sbjct: 337 EFIDKLEEYRDSDNRDHRQTFMFMERAYNFAKSNRALGLGVLGWHSLLQSKRHAFDSQEA 396

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  E    I   +  AS ELA++ G   + KG                          
Sbjct: 397 YDLNSEIFREIKQRSYKASEELAEKFGEPETLKG-------------------------- 430

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798
                            G RN+   AIAPT + A I G VSQ I+P + N+YVK      
Sbjct: 431 ----------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNVYVKDIAKIK 474

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            T+ N FL    +++ +    +   ++ +DGS+ ++E + +  K +  T  EID M +I 
Sbjct: 475 TTIKNPFLEELFEEKGMNTPEVWRSVRDNDGSVQHLEFLTEQEKDVFKTYAEIDQMAIIY 534

Query: 859 SASRRQKWIDQAQSLNL--YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            A+ RQ  IDQ QS+NL  + D P  K+++ I+  AW +GLK+ YY  S +A  
Sbjct: 535 QAANRQNHIDQGQSINLLVHPDMP-IKEINKIHITAWKLGLKSLYYQHSMNAAQ 587


>gi|88801651|ref|ZP_01117179.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
 gi|88782309|gb|EAR13486.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
          Length = 592

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 151/641 (23%), Positives = 259/641 (40%), Gaps = 124/641 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                 + L   Y     G     P+     +A   A    + +  + +FY  +++ ++ 
Sbjct: 40  LTENSRKFLESGYL---TGKT--TPEERIREIADN-AEGILKMKGFSDKFYKYMAAGYYS 93

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            S+P   N G +     SCF + V DD+  I  +  E  M++K  GG    +  +R  GA
Sbjct: 94  LSSPVWSNFGKKRGLPISCFGSHVADDMGDILYSQSEVGMMSKLGGGTSGYFGKLRKRGA 153

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   NG S G +  +++       V+QG  R+G    YL   H D++EFL++    G +
Sbjct: 154 DVKN-NGSSSGSVHIMQLFEKMVDVVSQGSVRRGRFSPYLPVDHPDIKEFLEI----GTE 208

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                ++     + D +M+ +                                       
Sbjct: 209 GNPIQELTHGVTVSDQWMEEMIAGD----------------------------------- 233

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEIT 589
                  +   ++W K+L    E G+P+I F+D  N  +   +      +++SNLCTEI 
Sbjct: 234 -------VEKRSIWAKILQRRGEIGYPYILFRDNANNGTVDVYKDKNHEIYASNLCTEIM 286

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------ 637
           L S+ + + VC L SINL+ +      +  K    + T    LD V++            
Sbjct: 287 LPSNDDWSFVCCLSSINLVHY------EEWKDTDAVETLAYFLDAVMEEFITKLEVYKDS 340

Query: 638 ------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                      +EKA      +RA+GLG +G+ S L    + + S EA ++  E  + I 
Sbjct: 341 SKRDDQFTFRFMEKAYNFAKDNRALGLGALGWHSLLQSKMLAFDSQEAYDLNTEIFKVIK 400

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS E+A           +L+ +                                 
Sbjct: 401 EKSYKASEEMA-----------TLYGEPAV------------------------------ 419

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +K  G RN+   AIAPT + A I G VSQ I+P + N+YVK       T+ N  L   L
Sbjct: 420 -LKGYGRRNTTLNAIAPTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIRNPVLEKLL 478

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + +      +   ++ +DGS+ ++  + D  K++  T  EID   ++  A+ RQ  IDQ 
Sbjct: 479 EDKGESTSDVWKSIRDNDGSVQHLAILTDAEKEVFKTYSEIDQKVIVYQAANRQNHIDQG 538

Query: 871 QSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QS+N+ +      K+++ +Y  AW +G+K+ YY  S +A  
Sbjct: 539 QSINIMVHPDMPIKEVNDVYITAWKLGVKSMYYQHSMNAAQ 579


>gi|325968165|ref|YP_004244357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707368|gb|ADY00855.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
          Length = 1312

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 214/467 (45%), Gaps = 30/467 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++I+  +G    F+ ++L   ++     L  V    ++     ++   L  S+L   + 
Sbjct: 13  RIRILKRNGNTEDFSREKLVRSLK-----LAGVPDPDLVINAL-DIKGTLPSSELSDRVQ 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                ++  +  +      +LL  + ++V      K         +  Y E F  +   G
Sbjct: 67  LIMLNMVTDDLKWHDAARNYLLWSMYKQVWGKDVVKAINDGRTRFEDAYREGFRAWFRTG 126

Query: 264 VKARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           ++ R+            +  LA  L   RD    Y G++ L  RY L  ++GS  E PQ 
Sbjct: 127 LELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEAPQY 186

Query: 320 FFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            +MR AMG+A  E     +       FY+L+S    M ++PTL+N+ TR  QLS+CF+  
Sbjct: 187 LWMRTAMGVAYAELKYGGDPITWTRRFYDLMSQLKLMPNSPTLYNAMTRLGQLSACFVVP 246

Query: 376 VPDDLY--------------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           + D L               GI  AL+  A++ +  GG+G ++  +R  G  +  T G +
Sbjct: 247 IDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIA 306

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F+K+ +     + QGGKR+GA    L  WH D+E+F+  +     D  +  + N 
Sbjct: 307 SGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGELKD-IQLQNFNI 365

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM++  +     L +P E   L+  +G+EF   YE        G+I+++R+I+
Sbjct: 366 SVAIDDHFMQKALKGEDIYLVNPRECPCLYKTWGEEFIKCYEGCIEAIKAGKIRIWRRIN 425

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
           A  LW K++   +++G P +  +D  N  + ++  G V++++N C  
Sbjct: 426 AKELWDKIVKSAWDSGDPGLWNRDLANYINNEKIPGEVINATNPCVT 472



 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 111/417 (26%), Positives = 181/417 (43%), Gaps = 43/417 (10%)

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
             F             G V  S+ C+E +L         CNLGSINL+ +  + + D+D L
Sbjct: 866  VFDTTVPGYHYYVAGGFV--SHNCSEESLYDFES----CNLGSINLVKYVYDGRIDWDSL 919

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A  ++ AVR LD+VID+N    ++ +K     R IGLG  G    L  L + Y SP+A+ 
Sbjct: 920  ARDVQLAVRFLDDVIDVNKLPHDRLRKRVLETRRIGLGANGLADTLIALGLKYDSPQALA 979

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----------------DS 725
            +++E   FI+  A+ AS+ELA+E+G Y ++K S W +GV P                 D+
Sbjct: 980  VSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEGVLPWTKHRERLEKFSSAIDKDA 1039

Query: 726  IGLLAEVRD--------------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +  D                 + R  +    +L   V TIG+RN + M+IAP  +
Sbjct: 1040 VDEYLKTLDVGYGDIKVKAIIDGATTVLRGYKASDSDLSIDVSTIGIRNGSIMSIAPEGS 1099

Query: 772  IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             + I GV+ SI+P +   Y+++   G     N   +  L Q    DEA  S ++ +    
Sbjct: 1100 RSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALKLLMQTKALDEATRSFVEEYGILP 1159

Query: 832  GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYR 890
             +       L  +  TA EI   W +       +W D   S  + +   +  + ++  YR
Sbjct: 1160 RDHP-----LANLLRTAHEIHWKWHVYMQVTWARWNDSGVSKTINMPSDTPIEDVEQAYR 1214

Query: 891  QAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             AWL+        R +S +  V  + +KG + K +         +   +   +S TS
Sbjct: 1215 LAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAKPSVEVKEVKVETKPKVEAKASYTS 1271


>gi|260588433|ref|ZP_05854346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260541307|gb|EEX21876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 763

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 138/643 (21%), Positives = 247/643 (38%), Gaps = 85/643 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y    N    E    +  RV+      +++  +  +E    L     + + 
Sbjct: 13  LGIDIWNKKY--RYNN---ESFDEWLDRVS----GGDSDLRQLILEK-KFLFGGRILSNR 62

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                 G +    +   +    D++  IF   ++ A    Y GG G D + +   GA + 
Sbjct: 63  GLD-KLGEKVTLSNCYVVEPPEDNIESIFDCAKKLARTYSYGGGCGVDISKLAPKGARVT 121

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T  ++ G + F+ + +     + Q G R+GA+   +   H D+EEF++++     D  +
Sbjct: 122 NTAKETSGSVSFMDLYSLVTGLIGQNG-RRGALMISIACDHPDLEEFIEIK----SDLDK 176

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  I D FM  V     + L    E                             
Sbjct: 177 VTKANISIRITDKFMLAVKMRKPFVLSFTRE------------------------ETGET 212

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEITLNSS 593
           + ++I A +++ K+  M ++   P + F D     +            +N C E  L + 
Sbjct: 213 IRKEIDAYSVFHKLCEMNWDYAEPGMLFWDRIENWNLLSADKEFSYAGTNPCAEEPLPAG 272

Query: 594 SEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKAKKSN 650
                 C LGSINL      N  F++     T+  AVR L+ V+D     H +++ ++S 
Sbjct: 273 GS----CLLGSINLSEFVTENKTFNFTDFKKTVDIAVRALNIVLDEGLPLHPLKEQRESV 328

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+ G    L  + I Y SPE++++ D     +++ AI  S  +A E G+Y  
Sbjct: 329 RDWRQIGLGIFGLADLLIKIGIKYGSPESIDLCDMIGHAMAYQAIMTSNSIAIEVGSYPK 388

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +K     Q  F  + I  L                    ++ +  IG+ NS  + IAPT 
Sbjct: 389 YKPDAVKQSPFFTEHIDELY-------------------RENISEIGLCNSQLLTIAPTG 429

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +++++ GVS  I+P Y N Y +   S              +   ++   +   +  +   
Sbjct: 430 SLSSMLGVSGGIEPVYANYYTRKTESLHGHD---------EYYKVYTPIVKKYIDEYG-- 478

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIY 889
           + +   +PD       TA  ++    I+  S  Q+ ID + S  + +    + K  + +Y
Sbjct: 479 LKDDSELPD----FFVTAQTLNYKERIDMQSIWQRHIDASISSTVNVPNNFTVKDTEDLY 534

Query: 890 RQAWLMGLKTTYYLRSR-SATSVEKSTLKGVDGKLNAVPVTDP 931
             AW  GLK     R     T +  +  K  + K N      P
Sbjct: 535 LYAWEKGLKGVTIFRDGCKRTGILTTDNKKKETKENNSDSNVP 577


>gi|94984359|ref|YP_603723.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
 gi|94554640|gb|ABF44554.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
          Length = 1010

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 149/688 (21%), Positives = 258/688 (37%), Gaps = 109/688 (15%)

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLF--NSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
             + +K+  AV  +  +     + +        +G +  +     +  VPDD+ GI  A 
Sbjct: 167 QPDGDKQPVAVRNWTRVVYGEALPADLVARARQNGVQIVRALPGGVQAVPDDMGGIIDAA 226

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF-LKVAND------------- 433
           +  A  AK       D + +R  GA I G+ G S G + F +++ ++             
Sbjct: 227 RAVAESAKVGVEPRIDLSQMRPEGAPIKGSGGTSSGPVSFLMEIFDNFLEWANRGGETSG 286

Query: 434 -----------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNT 481
                          V QGG R+GA  A +   H DV +FL  +    +         N 
Sbjct: 287 PINTLRYVYAPVLRVVRQGGTRRGAGMATIAIEHPDVLDFLTAKDLDREAAEGDISTFNI 346

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL------YGKEFEIAYENYE--------- 526
           +  + + F + +  +A W +    EV   + L      Y        E  E         
Sbjct: 347 SILVSEQFWQALEGDALWHV-DVQEVPGKYYLAPQSGPYDGHLPTLPERAEDGARGVPLY 405

Query: 527 RQADRGEIKV---FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
           R A RG  +       + A  LW ++    + TG P + F D  N  S  +++G    + 
Sbjct: 406 RGAPRGRSQPADARPGVPAKWLWDQIAEHAWATGEPGLIFVDRVNEHSALKNLGKRYEIR 465

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C EI L         C+LG+INL A+  N++FD+    + +RT VR LD+V+D+N 
Sbjct: 466 STNPCGEIPLTVGEP----CDLGAINLAAYVQNSRFDFAAFRADVRTCVRFLDDVLDVNV 521

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E  + ++   R +GLG+MG   AL  L + Y S        E M  +   A++ S  
Sbjct: 522 FALEDNRVASQDLRRLGLGVMGLADALIKLGLRYDSEAGRAAIAEIMTALREEAVAESER 581

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           L QERG Y  ++ +                                    +++     RN
Sbjct: 582 LGQERGVYPVYERN-----------------------------------AQKIPHSPRRN 606

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR------- 813
              + +APT T + + GVS  I+P +     +   +    +++   +  L Q        
Sbjct: 607 VAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGAEYRALLHPLFMELLNQYPPAANMD 666

Query: 814 ---DLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID- 868
                W+   +   +  + GS+  +  IP+ L+++   A +I P+  +      Q+  D 
Sbjct: 667 DGQGGWNWDRVTEAVSENHGSVVGLAFIPEALQQVFVCAHDIKPLDHVRMQGVVQQAFDA 726

Query: 869 ------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
                  + S  +   +  +   +   Y +A+  G K     R  S      ST K  + 
Sbjct: 727 GGQHAANSLSKTINLPNSATVADVRAAYAEAYRTGCKGITVYRDGSRQFQVLSTSKKKEK 786

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           K  A PV    +     G P+       
Sbjct: 787 KAEAEPV-QAATEVLGEGAPAVSRPSES 813



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 40/180 (22%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
            F+     I   +Y    +G  +      F R+A  +A  E  + +   A ++Y+L++  
Sbjct: 11  NFDENAQHIARRQYLQPGDGDIL----GMFRRIADWVAAAEAPEARERWAQKYYDLMAQK 66

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTT----VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+       P+   GI    ++ A++ K  GG G +  
Sbjct: 67  RFCPGGRVLAGAGTQHGNVLNCFVQGATEHAPESFDGIMEVAKKLALVTKVGGGNGVNLD 126

Query: 406 --PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
               R  G+          GV  +                       Y+   H DV +F+
Sbjct: 127 VYTPRAQGSR------PDAGVRGW----------------------VYMSAAHPDVGDFI 158


>gi|82492125|gb|ABB77922.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 569

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 144/595 (24%), Positives = 243/595 (40%), Gaps = 112/595 (18%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           +++  A  FY  +S   +  ++P   N G       SCF + + D+   +     E   +
Sbjct: 57  DEDGFADRFYEYMSRGFYSLASPVWSNFGLDRGLPISCFGSYIEDNTESLLYTQAEVGEM 116

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
            K  GG    +  +R  G+ I   NGKS G   F ++ +     ++QGG R+G    Y++
Sbjct: 117 TKLGGGTSGYFGNLRPRGSSITN-NGKSNGSYSFTELFDTEISVISQGGTRRGQFAGYID 175

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D++E+L+++     +  +  +M     I D + + +                    
Sbjct: 176 VEHDDLDEWLNIKT----EGDKIQNMYYGVIIGDDWFQSMIDGDE--------------- 216

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                                           W  ++      G P+I F+D  N   PQ
Sbjct: 217 ---------------------------DKRETWANIVETRINIGVPYIIFRDNMNGGKPQ 249

Query: 574 QHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +      +++SNLCTEI+L ++  E+ VC L S+N L       FD  K    + T  R
Sbjct: 250 VYKDKNYQINASNLCTEISLPATPTESFVCCLSSMNAL------HFDEWKDTDAVETLTR 303

Query: 631 VLDNVIDINC-----------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            LD V++                +++A +    HRAIG+G++G+ S L    IP+ S +A
Sbjct: 304 FLDAVMEEFIQEAQGNEYLGVDLMQRAVRFAERHRAIGIGVLGWHSYLQSKMIPFDSMDA 363

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +   ++    I   + + S  +A E G     +G                          
Sbjct: 364 MRENEKIFSMIEERSYAESERMADEFGEPEVLEG-------------------------- 397

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGD 798
                            G RN+  M++APT + + I G VS SI+P   N +V+      
Sbjct: 398 ----------------YGRRNATTMSVAPTKSSSVILGQVSASIEPLKSNYFVRDGAKLK 441

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            T  N FL   LK R          +  +DGS+ +++ + D  K++  T  EI  M +I 
Sbjct: 442 STQKNRFLEAILKDRGEDTRDTWDSIGRNDGSVQHLDCLDDHEKEVFKTFSEIPQMAIIN 501

Query: 859 SASRRQKWIDQAQSLN--LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            A++RQ  IDQ+QS+N  +  DE S K+++ +Y +AW  G+K+ YY  S +A   
Sbjct: 502 QAAQRQDHIDQSQSVNISINPDEVSVKEMNQLYIEAWRKGVKSLYYQHSVNAAQQ 556


>gi|169829015|ref|YP_001699173.1| ribonucleotide-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168993503|gb|ACA41043.1| Vitamin B12-dependent ribonucleotide reductase [Lysinibacillus
           sphaericus C3-41]
          Length = 866

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 162/740 (21%), Positives = 268/740 (36%), Gaps = 132/740 (17%)

Query: 312 SRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG--TRH 365
             +E+  +    R A GLA+ E   EKR   F   Y+ L S  F+ +   ++ +G  T  
Sbjct: 136 KPLEIFYEQIAKRNATGLAIVEKTPEKRQEWFEKFYDQLVSLKFIPAGRVIYGAGSETDV 195

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 196 TFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 255

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH-------- 477
            +L         V QGG R+GA    L  WH D+ EF+  +       R           
Sbjct: 256 SWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPRILRYLIENTTDETI 315

Query: 478 -----------------DMNTANWIPDLFMK---------------RVTQNAGWTLFSP- 504
                            +      +    ++               ++     +T+ +P 
Sbjct: 316 IRLAKEKLNFKPLSMQEEAMYQGIVNYKSIEGLGGFDTAIIREAENKLRDGGTYTVHNPE 375

Query: 505 ------------DEVSDLHDLYGKEFEI---AYENY---ERQADRGEIK----------- 535
                        E  +  +    +FE+   A E Y   E  A   E             
Sbjct: 376 FLTGANISVTLTKEFMEAVE-NDDDFELRFPAVEEYSKEEMSAYNTEWHNVGDVREWEKM 434

Query: 536 -----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEIT 589
                 +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  
Sbjct: 435 GYKIRTYRTIKAKELWNLINVCATYSAEPGIFFIDNANDMTNAKAYGQSVVATNPCGEQP 494

Query: 590 LNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNL ++NL       N   DY+ L  T+R  VR+ DNVID   + +E+ +
Sbjct: 495 LAP----YSVCNLAAVNLAQFANKDNQTVDYEALRETVRVGVRMQDNVIDATPYFLEENR 550

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R +GLG+MG    L      Y S     + DE  + I+  A  AS ELA+ERG+
Sbjct: 551 VQALGERRVGLGVMGLADLLIYCEKEYGSEAGNALVDEIFKTIAETAYEASTELAKERGS 610

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +    G+          +    A +R               +K+++   G+RNS+ + +A
Sbjct: 611 FPFLVGA----------TDEETARLRKAFTETGFMEKMPAHIKEQILATGIRNSHLLTVA 660

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GV+  ++P +   Y +S   G F  V + +V E   R              
Sbjct: 661 PTGSTGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDR-------------- 706

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                + E    +L +   TA E+ P    +     QKWID + S  +   +  + ++++
Sbjct: 707 -----HPEANEQELPEWFVTAMELKPEAHADVQCIIQKWIDSSISKTVNAPKGYTVQQVE 761

Query: 887 FIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGV------DGKLNAVPVTDPNSSTHSL 938
            +Y + +  G K  T Y   SR +  +     +        + +L       P     ++
Sbjct: 762 KVYERLYKGGAKGGTVYVDGSRDSQVLTLKAEENDMDQLSFEEELVEEHTKRPVVLVDTI 821

Query: 939 GIPSSCT-----SDTECEVC 953
               S T         C VC
Sbjct: 822 QALESTTVIGSDVGNTCPVC 841


>gi|123845657|sp|Q3KSU5|RIR1_EBVG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|64173255|gb|AAY41105.1| unknown [Human herpesvirus 4]
          Length = 826

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 177/809 (21%), Positives = 290/809 (35%), Gaps = 117/809 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L + LI   +     +P    +  R     L R    +V     +         Y E
Sbjct: 8   EHELLSKLIDELKVKANADPEADVLAGRL----LHRLKAESVTHTVAEYLEVFSDKFYDE 63

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
            F +           H   ++  +   A    YER  +  YL     YD Y       + 
Sbjct: 64  EFFQM----------HRDELETRVSAFAQSPAYERIVSSGYLSALRYYDTYLYVGRSGKQ 113

Query: 315 EMPQAFFMRVA----------MGL------ALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           E  Q F+MR+A           GL      A  E E +    ++Y   L+S    CSTP 
Sbjct: 114 ESVQHFYMRLAGFCASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPF 173

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +  +G  +  L+SC LTT                 L ++ G     +             
Sbjct: 174 MRFAGVENSTLASCILTTPDLSSE-----WDVTQALYRHLGR--YLFQRAGVGVGVTGAG 226

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
                 +   +++ N      N G KR  +V AY+E WH  + +FL       ++  R  
Sbjct: 227 QDGKH-ISLLMRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFL--ETKLPENHERCP 283

Query: 478 DMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            + T  ++P+LF K       + W LF P +  DL  LYG+EFE     Y R    G+  
Sbjct: 284 GIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFER---EYYRLVTAGKFC 340

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS 594
              ++S  +L   ++    + G P+I  K+ CN    +   G  ++++NLC E+   S  
Sbjct: 341 --GRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEVLQPSRK 398

Query: 595 EETAVCNLGSINLLAHFAN-----------------------------------NQFDYD 619
              A CNL +I L     N                                   + F   
Sbjct: 399 S-VATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAIGDGFSLA 457

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L    + A  V+   I     T +    +     ++GLG+ G       L   Y  P +
Sbjct: 458 RLRDATQCATFVVACSILQGSPTYDSRDMA-----SMGLGVQGLADVFADLGWQYTDPPS 512

Query: 680 VEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             +  E  E + F A+  S  +    R  +  FK S +  G F                 
Sbjct: 513 RSLNKEIFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTDLSIP---- 568

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               R  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +
Sbjct: 569 ----REIWSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEE 624

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMW 855
               N         R  W    + D +  +   G +  +P+ L++ +    TAF+ +   
Sbjct: 625 ALRPN---------RSFWRHVRLDDREALNLVGGRVSCLPEALRQRYLRFQTAFDYNQED 675

Query: 856 LIESASRRQKWIDQAQSLNLY---LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
           LI+ +  R  ++DQ+QS +L+    D      L  +  +++ +GLKT  YY R   A  +
Sbjct: 676 LIQMSRDRAPFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCRIEKAADL 735

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
                K       +VP  + N  + +  +
Sbjct: 736 GVMECKASAAL--SVPREEQNERSPAEQM 762


>gi|94968153|ref|YP_590201.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550203|gb|ABF40127.1| Ribonucleoside-diphosphate reductase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1004

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 130/641 (20%), Positives = 232/641 (36%), Gaps = 61/641 (9%)

Query: 339 AVEFYNLLSSF-HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A   +N L     F          G   PQ S+CF+ +V D L  I    +   ML K+ 
Sbjct: 168 ANWHWNFLKQQAEFGP-------VGYTRPQCSACFINSVHDSLDSILTLAKTEGMLFKWG 220

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWH 456
            G G + +P+R     +    G + G + F++  +  A  +  GGK R+ A    L   H
Sbjct: 221 SGTGTNLSPLRSSNEQLS-GGGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNIEH 279

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL--FMKRVTQNAGWTLFSPDEVSDLHDLY 514
            D+ EF+D +                   PD   +     QNA  ++   D+      + 
Sbjct: 280 PDIVEFIDCKAKEEAKAWALMQQGYDGSSPDAEAYSSIFFQNANNSVRVTDDFMYAV-VR 338

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             +F        +    G+  V +   A  L  K+    ++ G P + +    N     +
Sbjct: 339 DADFST------KAVKSGD--VVKTFKARWLLSKISEATWQCGDPGMQYDTTVNRWHTSK 390

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           +   +++SN C+E        + + CNL S+NL+    N  FD           +   + 
Sbjct: 391 NTARINASNPCSEYMFL----DDSACNLASLNLMKFAPNGTFDVAAYRHACAITITAQEI 446

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           ++D   +  E   K++H +R +GLG     + L    +PY S    + A      +   A
Sbjct: 447 LVDNAGYPTESIMKNSHDYRPLGLGYANLGALLMAAGLPYDSDAGRDYAACVTAIMCGEA 506

Query: 695 ISASVELAQERG--------------AYSSFKGSLWDQGVF------PIDSIGLLAEVRD 734
              S ++A+                   S+  G   ++  F         S+  + +   
Sbjct: 507 YLQSSKIAELGQPLTPATPITQSVEITGSACPGWYVNREPFLDVIRMHRASVNNINQKNV 566

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVK 792
              +   ++  WDE  +  +  G RNS    +APT TI  +    +  I+P    + Y K
Sbjct: 567 PAPVFEAAKATWDEALQHGERHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKK 626

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAF- 849
               G   +VN+ +   L +     +   + + Y D  G+I     I D+   +   +F 
Sbjct: 627 LVGGGMIKIVNNTVPAALFKLGYTSDQANATVSYIDATGTIEGAPHIKDEHLAVFDCSFK 686

Query: 850 ------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
                  I  M  ++  +  Q +I  A S  + L  + +   +   Y Q+W +GLK    
Sbjct: 687 PAKGTRTISYMGHVKMMAATQPFISGAISKTVNLPKDATIDDIMEAYIQSWKLGLKAVAI 746

Query: 903 LRSRSA----TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            R  S      +   ++      K  A PV   +    +  
Sbjct: 747 YRDGSKGGQPLNASGTSTTDKLKKAEAAPVASESEDDAAAP 787


>gi|288553354|ref|YP_003425289.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288544514|gb|ADC48397.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 857

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/742 (22%), Positives = 280/742 (37%), Gaps = 133/742 (17%)

Query: 312 SRIEM-PQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSG--TRH 365
             +E+  +    R A GLA  E +  +R     +FY+ L + +F+ +   L+ +G  T  
Sbjct: 124 KPLELFYEQIAKRNATGLASVEEDAARRQESFEQFYSELVNMNFIPAGRVLYGAGAKTDV 183

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 184 TYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 243

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDDRR 474
            +L         V QGG R+GA    L  WH D+ EF+            L + T D++ 
Sbjct: 244 SWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRFLLEQTNDEQI 303

Query: 475 R--------------THDMNTANWIP-------DLFMKRVTQNAGWTLFS--PDEVSDLH 511
           R                +      +          F  +V Q A   L +    +V++  
Sbjct: 304 RRLVKEKLSFTPLSPVEEAMYQGIVNFRNVEGQGGFDTKVIQEAEDKLMTGGTYKVNNPE 363

Query: 512 DLYG--------KEFEIAYENYERQADRGEI----------------------------- 534
            L G        KEF  A EN E  A R                                
Sbjct: 364 FLTGANISITLTKEFMEAVENDEEYALRFPDVENYTAEEMESYNETWHEIGDVREWREMG 423

Query: 535 ---KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
              + +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  L
Sbjct: 424 YGVRTYRLIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQPL 483

Query: 591 NSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +VCNL +INL  +A       ++DKL  T+   VR+ DNVID   + +E   K
Sbjct: 484 AP----YSVCNLAAINLAEMADKETKTVNFDKLKRTVEVGVRMQDNVIDATPYFLEDNTK 539

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S +  ++ D+  E I+  A   S+ELA+E+G++
Sbjct: 540 QAKGERRVGLGVMGLHDLLIYAETVYGSEKGNQLVDQVFETIATTAYRTSIELAKEKGSF 599

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G   ++             +R+        +   +++++ V   G+RNS+ + +AP
Sbjct: 600 PYLIGQNEEE----------TKALREAFINTGYMKKMPEDIREGVLAYGIRNSHLLTVAP 649

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  V + +V E                   
Sbjct: 650 TGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAGIVEEYLN---------------- 693

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
               + E   D+L +   +  E+ P    +     Q+W+D + S  +   +  + +++  
Sbjct: 694 ---SHPEASADELPEWFISTMELSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQA 750

Query: 888 IYRQAWLMGLK--TTYYLRSRSATSVE--------------KSTLKGVDGKLNAVPVTDP 931
           +Y + +  G K  T Y   SR A  +               + T +  +G+   V + + 
Sbjct: 751 VYERLYRGGAKGGTVYVDGSRDAQVLSLKAEENNFEQKELFEQTTEEAEGEKKKVVLVNT 810

Query: 932 NSSTHSLGIPSSCTSDTECEVC 953
            +   S  +         C VC
Sbjct: 811 ITEVRSTNVTFGSEVGNTCPVC 832


>gi|157325078|ref|YP_001468503.1| gp123 [Listeria phage A511]
 gi|66733086|gb|AAY52904.1| gp123 [Listeria phage A511]
          Length = 466

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 136/455 (29%), Positives = 222/455 (48%), Gaps = 25/455 (5%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           I+ D+G   + F   RL   ++        ++ +    +    +   D  S  ++   LI
Sbjct: 21  IVKDNGSRKLPFEEDRLNRYLDNIKKEFPKLNIESYRKKAIHYILSKDEYSVDEMVDYLI 80

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P +    AR  L++L ++          K   ++    Y  Y       
Sbjct: 81  REAESRVDVTTPEWEFFAARLYLQRLYKKA--------SKNRFYDAIMKYGSYVGLHESL 132

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318
            + G+ +  + E     +L+     +   +D  F Y GL +L  RY       ++ E+PQ
Sbjct: 133 AQRGIYSVDILEKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQ 192

Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ L   E E + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV 
Sbjct: 193 ERWLTIALFLMQDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVD 252

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K  GG+G     VR  GA I G  G S G +P++K  N+TAV+
Sbjct: 253 DSLQGIYDSNTDVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVS 312

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+   L+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V    
Sbjct: 313 VDQLGARKGAITVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRG 372

Query: 498 GWTLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV      Y +++        +  E YE     G I   +++ A+ + ++++
Sbjct: 373 EWYLFDPYEVKQKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK-KRVKALDIMKRIM 431

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               ETG P++ ++D  N  +P  H G++++SNLC
Sbjct: 432 ISQLETGTPFMFYRDTVNRANPNSHAGMIYASNLC 466


>gi|326802953|ref|YP_004320771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650728|gb|AEA00911.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 860

 Score =  322 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 164/749 (21%), Positives = 279/749 (37%), Gaps = 140/749 (18%)

Query: 311 GSRIE-MPQAFFMRVAMGLALKETEKEKRAVE---FYNLLSSFHFMCSTPTLFNSG--TR 364
              +E   +    R A GLA  +  +++R      FY   S  +F+ +   L+ +G  T 
Sbjct: 121 DKPLEIYYEQIAKRNAHGLAAIDKNEDRRQEIEAAFYQEESKGNFVPAGRVLYGAGSGTD 180

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  VPD   GI    +E   +    GG+G + + +R   + + G NGKS G 
Sbjct: 181 VTYFNCYVMPYVPDSRGGIADHRKEVMEIMSRGGGVGTNGSTLRPRHSLVRGVNGKSSGA 240

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-------------- 470
           + +L         V QGG R+GA    L  WH D+ EF+  +                  
Sbjct: 241 VSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILQFIKESSKDSY 300

Query: 471 -----DDRRRT-------HDMNTANW---------IPDLFMKRVTQN------------- 496
                D++ +         DM  A           + D       +N             
Sbjct: 301 IKQLVDEKLKFVYSTPAQIDMFQAVVDLKEKQGGDVSDAAYAEAKENLELGGHYEVNEPD 360

Query: 497 ----AGWTLFSPDEVSDLHDLYGKEFEI---AYENYERQ-------------------AD 530
               A  ++    +  +     GK++ +   A E Y+++                   A 
Sbjct: 361 FLTGANISVAISSDFMEAVKE-GKDWSLRFPAVEKYDQEEMAAYDSQWQEIGDVREWEAM 419

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEIT 589
             EI  +R + A  LW+ +         P I F D  N  +     G  V ++N C E  
Sbjct: 420 GHEITTYRTLPAQELWQLINICATYAAEPGIFFIDRANEDTNAVAYGQKVVATNPCGEQP 479

Query: 590 LNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           L       +VCNLG+INL  +A   N + D  KL  T+ TA+R+ DNVID   + +E  K
Sbjct: 480 LAP----YSVCNLGAINLAQMADKENKRLDKKKLQKTVATAIRMQDNVIDATPYFLEANK 535

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K     R IGLG+MG    L      Y S E  ++ DE  E I+  A   S+ELA+ERG+
Sbjct: 536 KQALGERRIGLGVMGLADLLIYCEKRYGSKEGNQLVDEVFETIAVTAYQTSIELAKERGS 595

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +    G          ++      +R+    +   +   + +++ V   G+RNS+ + +A
Sbjct: 596 FPFLIG----------ETDEETQALRERFVQSGFMQRMPESIRQDVLKYGIRNSHLLTVA 645

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   +  VS  ++P +   Y ++   G F  VN+ +V E                  
Sbjct: 646 PTGSTGTMMNVSTGLEPYFAFKYYRTGRLGKFIEVNADIVQEYLD--------------- 690

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLD 886
                + E   D+L     +A ++ P   ++  +  Q+W+D + S  +   +     ++ 
Sbjct: 691 ----QHPEADVDNLPDFFVSAMDLSPREHVDVQTTIQRWVDSSISKTVNAPKGYAVNQVA 746

Query: 887 FIYRQAWLMGLK--TTYYLRSRSAT--SVEKSTLKGVDGKLNAVP--------------- 927
            +Y + +  G K  T Y   SR +   ++ K   +  D    A                 
Sbjct: 747 EVYEKLYEGGAKGGTVYVDGSRDSQVLTLNKDEHEDSDQDSQADQNQQDDVVVVDDSEEL 806

Query: 928 ---VTDPNSSTHSLGIPSSCTSDTECEVC 953
              V    +  +   +         C +C
Sbjct: 807 RQLVDQAQAEANEDEVVFGSELGNTCPIC 835


>gi|51518028|ref|YP_067953.1| BORF2 [Macacine herpesvirus 4]
 gi|18025479|gb|AAK95423.1| BORF2 [Macacine herpesvirus 4]
          Length = 822

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 177/781 (22%), Positives = 284/781 (36%), Gaps = 117/781 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L T LI   +     +P    +  R  L +L+ E +T    +  +    +    Y E
Sbjct: 6   ERELLTKLIDELKVKANVDPEADVLAGRL-LHRLKAESVTRTVAEYMEVFSDK---FYDE 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
            F +           H+  ++  +   A    YER  +  YL     YD Y       R 
Sbjct: 62  EFFQ----------AHQDELEARVSAFAQSPAYERIVSAGYLSALRYYDTYLYVGRNGRQ 111

Query: 315 EMPQAFFMRVA------MGL----------ALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           E    F+MR+A        L          A  E E +    ++Y   L+S    CSTP 
Sbjct: 112 ESVPHFYMRLAGFCASTTCLYTGLRDALLRARPEIETDMEVFDYYFEHLTSQTVCCSTPF 171

Query: 358 LFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +  +G  +  L+SC LTT     +        +          G+G   T     G HI 
Sbjct: 172 MRFAGVENSTLASCILTTPGLSSEFEVTQALHRPLDRYLYERAGVGLGVTEYGKDGKHIS 231

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
                       +++ N      N   KR  +V AY+E WH  + +FL       ++  R
Sbjct: 232 L----------LMRMINSHVEYHNYLCKRPVSVAAYMEPWHSQIFKFL--ETKVPENHER 279

Query: 476 THDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              + T  ++P+LF K  R    + W LF P    +L  LYG+EFE     Y R    G+
Sbjct: 280 CPGIFTGLFVPELFFKLFRDEPWSDWYLFEPQNAGNLEKLYGEEFER---EYYRLVTEGK 336

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                ++S  +L   ++    + G P+I  K+ CN    +   G   +S       L  S
Sbjct: 337 FC--GRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNSANLCAEVLQPS 394

Query: 594 SEETAVCNLGSINLLAHFAN-----------------------------------NQFDY 618
            E  A CNL +I L     N                                   + F  
Sbjct: 395 RETVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLGLPRLSVTMPGEGAIGDGFSL 454

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L    + A  V+   I     T +    +     ++GLG+ G       L   Y  P 
Sbjct: 455 ARLRDATQCATFVVACSILQGSPTYDSRDMA-----SMGLGVQGLADVFADLGWQYTDPS 509

Query: 679 AVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +  +  E  E + F A+  S  +    R  +  FK S +  G F                
Sbjct: 510 SRSLNKEIFEHMYFTALCTSNLIGLHTRKTFPGFKRSKYAGGWFHWHDWAGTGLSIP--- 566

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                +  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     
Sbjct: 567 -----KDMWARLSERIVRDGLFNSQFVALMPTSGCAQLTGCSDAFYPFYANASTKVTNKE 621

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPM 854
           +    N         R  W    + D++  +   G I R+P+ LK+ +    TAF+ +  
Sbjct: 622 EALRPN---------RAFWRHVRMDDMEAVNLVGGRISRLPERLKRRYLRFQTAFDYNQE 672

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            L++ +  R  ++DQ+QS +L+L E        L  +  + + +GLKT  YY R   +  
Sbjct: 673 DLMQMSRDRAPFVDQSQSHSLFLREEHAARASTLANLLVRGYELGLKTIMYYCRIEKSAD 732

Query: 911 V 911
           +
Sbjct: 733 L 733


>gi|221102509|ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reductase family member
           (rnr-1), partial [Hydra magnipapillata]
          Length = 428

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 148/438 (33%), Positives = 208/438 (47%), Gaps = 54/438 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L Y RD      G  +L DRY L       E  QA F RVA   A    +  + A   Y+
Sbjct: 30  LDYTRDAYLTEFGKAVLEDRYLLEG-----ETYQAMFARVACAFA----DDLEHAKRLYD 80

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM STP L N G +     SCFL TV D+L GI     EN +LA   GG+G  W
Sbjct: 81  YISKLWFMPSTPILSNGGAKRGLPISCFLNTVTDNLDGIIKTWNENVLLASNGGGIGTYW 140

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR LG  +    G+S G+IPF++V +   +A++QG  R+G+   YL+  H ++EEF+D
Sbjct: 141 GDVRSLGESVGR-AGESSGIIPFIRVMDSQTLAISQGSLRRGSAAVYLDIHHPEIEEFVD 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  N  + L SP                    
Sbjct: 200 IRKPSGDFNRKSLNLHHGVNITDKFMQAVKHNKPFELLSPKTKK---------------- 243

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHS 581
                      V + + A  L++K+L    +TG P++ F D  N      Q+ +G  V  
Sbjct: 244 -----------VVKTVDARLLFQKILETRMQTGEPYLVFTDTVNKSLPKHQRELGLKVKM 292

Query: 582 SNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
           SNLC+EI L +      +E TAVC L S+NL         ++      I   +R LDNV 
Sbjct: 293 SNLCSEILLPTGIDHLGNERTAVCCLSSLNL-----EKWDEWHDHPLMIEDILRFLDNVL 347

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              ID     + +AK S    R++GLG+MGF S L   +IP+ S  A          I  
Sbjct: 348 QTYIDEAPEGMARAKYSATRERSVGLGVMGFHSFLQAKNIPFESAMAKSWNMRIFRTIRQ 407

Query: 693 HAISASVELAQERGAYSS 710
            A +ASV LA+E+GA   
Sbjct: 408 KADAASVALAEEKGACPD 425


>gi|161522899|ref|YP_001585828.1| hypothetical protein Bmul_5876 [Burkholderia multivorans ATCC
           17616]
 gi|189348270|ref|YP_001941466.1| ribonucleotide reductase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|160346452|gb|ABX19536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia multivorans ATCC 17616]
 gi|189338408|dbj|BAG47476.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 598

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 137/641 (21%), Positives = 240/641 (37%), Gaps = 84/641 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTL 358
           +  +RY      SR       F RVA  L+L E  E+  +A   + L      + +   L
Sbjct: 10  VFAERYAQPGETSRA----DVFHRVAHALSLAEPAERRAQAERAFFLNLQRGAIGAGRIL 65

Query: 359 FNSGTRHP-QLSSCFLTTV---PDDLYGIFGA-----LQENAMLAKYSGGLGNDWTPVRG 409
            N+G  +   + +CF+  +   PD             L +  +     GG+G D++PV  
Sbjct: 66  ANAGADNGRTMVNCFVHPLAIPPDTPVQTVDTALAQALDDARVTLLMGGGIGYDFSPVPP 125

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A+        +G    +   +    A+   G R+GA    L   H D+  F+  ++  
Sbjct: 126 ADAYERR-QSSVRGACEAIDRFDGMCRALPFTGPRRGAQMGVLRCDHPDLVAFVAAKRG- 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  + D FM+ V  +  W L              +  +  Y       
Sbjct: 184 ---RSRWPTFNLSVGVTDAFMEAVRHDLPWALVHHAPPRRASGAPPRRPDGRY------- 233

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 ++  + A  LW +++    ++  P + F D     +P +    + ++N C E  
Sbjct: 234 ------LYATVPARTLWHEIVKAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQP 287

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L         C LG I+L            N +FD+  LA  +R  VR+LDNV+D+    
Sbjct: 288 LPPYGS----CVLGPIDLSRFVLHPFGVDENPRFDFATLADAVRIQVRMLDNVLDLTAWP 343

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +      R +G+G+ G   AL +L + Y S EA  +A   +  +  HA +AS  LA
Sbjct: 344 LAAHEHEARRTRRVGVGVTGLADALTMLRVRYDSAEARTLARTIVLTMREHAFAASAALA 403

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERGA+ ++  + +  G             R  L +              +   G+RNS+
Sbjct: 404 AERGAFPAYDPAAYLTG----------PAYRTLLPLKVHHT---------IARHGLRNSH 444

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ AP  +++       S  I+P+      +   + D   +  F       R       
Sbjct: 445 LLSFAPAGSVSLAFCDNCSNGIEPAVGWTQRRMVRTADGQ-IRPFRAENHAYRLF----- 498

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
               + H  ++        +L     TA +I P   +   +  Q  +D   S  + +  +
Sbjct: 499 ---HELHGENV--------ELPGYFVTAADIAPADHVAMLAALQPCVDAGISKTVTMPGQ 547

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR--SRSATSVEKSTLKG 918
            S  ++D ++ QAW  GLK     R   R A+ V   T + 
Sbjct: 548 CSLAEVDALFFQAWRDGLKGITVFRPDPRLASVVADDTARA 588


>gi|163784573|ref|ZP_02179422.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880159|gb|EDP73814.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 592

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 158/446 (35%), Positives = 241/446 (54%), Gaps = 26/446 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK----NMYDGLSESDLETAL 202
           ++  DGT   F  K+L   +     G+       +  +  K     + + ++  +L+  +
Sbjct: 5   VVKRDGTEEKFQMKKLINAIFALFEGMDLPDDWEIAFKIAKELDLKIPERVTTEELDFLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI     Y  + +R    +L++ +   + K+ +              F   +E 
Sbjct: 65  LKAIEQLIPTHYIYDTLASR----QLQKIINRKIDKRFKS-------------FKEALEY 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
           GVK  L  E +++FDL  + N + YERD   +Y G+  L DRYF    NG  IE PQ FF
Sbjct: 108 GVKEGLYKEDILNFDLEKIENAIDYERDNLLDYFGMTTLKDRYFTKDRNGEIIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVA+G+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC++  + D L 
Sbjct: 168 MRVALGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ I   N KS GVIPF+K+ +    A+ QG
Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSAIKSLNAKSSGVIPFIKIFDTIVNAIQQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAIWMPDEIMRRIKEGEPLYL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   +GK+F   Y     +A+ GEIK+++KI +   +R+ L  L +TGHPW+
Sbjct: 344 FDPAECPELVASWGKDFTEKYFECIEKAETGEIKLWKKIDSQEWFRRYLFKLAKTGHPWL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTE 587
           TFKD  N  +P    GV++SSNLC  
Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCVT 429



 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 31/226 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQHNKS 89
           V+KR+G    F   K+  AI   F   EG        +   I K L  +   R+      
Sbjct: 5   VVKRDGTEEKFQMKKLINAIFALF---EGMDLPDDWEIAFKIAKELDLKIPERVTTEELD 61

Query: 90  ALIVH-IEDIQDQVECSLMQSGH-HKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            L++  IE         L+ + + +       L +     +       K       K  +
Sbjct: 62  FLVLKAIEQ--------LIPTHYIYDTLASRQLQKIINRKIDKRFKSFKEALEYGVKEGL 113

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             +D  +++F+ +++E  ++     L D              Y G++    +        
Sbjct: 114 YKED--ILNFDLEKIENAIDYERDNLLD--------------YFGMTTLK-DRYFTKDRN 156

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             I ++P +  +     +     EV+    K  +    H    LY 
Sbjct: 157 GEIIEKPQWFFMRVALGIGNNEDEVIKVYNKISKLEYLHSTPTLYN 202


>gi|255282089|ref|ZP_05346644.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
 gi|255267408|gb|EET60613.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
          Length = 757

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 142/635 (22%), Positives = 250/635 (39%), Gaps = 98/635 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y     G   E  +A+  R++ G             E    +    F+   
Sbjct: 13  LGMDIWERKY--RSEG---EDFEAWISRISGG-----------NEEIARYIKEKKFLFGG 56

Query: 356 PTLFNSGTRHP-----QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N G           +   +T   D++  IF   ++ A    Y GG G D + +   
Sbjct: 57  RILSNRGLDQKDRKVTYSNCYVITPPKDEIEDIFECAKKLARTYSYGGGCGIDISGLAPR 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA IH    ++ G + F+++ +     + Q G R+GA+   +++ H DVEEF++L+    
Sbjct: 117 GARIHNAAKETSGAVSFMELYSMVTALIGQNG-RRGALMISIDSSHPDVEEFINLKT--- 172

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  +    N +  I + FMK V +N  + L    EV+      G+  E           
Sbjct: 173 -DLEKVTKANISVRIHEDFMKAVKENGEYLLSFTREVT------GERIE----------- 214

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                  + + A  L+ K+    ++   P   F D     +   +         N C E 
Sbjct: 215 -------KTVQAKELFHKIALTNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINC--H 641
            L +       C LGSINL             FD +     ++ +VR L+ V++     H
Sbjct: 268 PLPAGGS----CLLGSINLSEFVQYPFTEAATFDMEGFRKCVQASVRALNEVLEEGLPLH 323

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++ ++S    R IGLG+MG   AL  L + Y   +AV + D+    ++  AI+ S EL
Sbjct: 324 PLQEQRESVAKWRQIGLGIMGLADALLKLGLTYGEQDAVAMCDKIGFAMADAAIATSAEL 383

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+GA+ +       +  + + +                     ++ ++ V+  G+RNS
Sbjct: 384 AKEQGAFPACNAEEIMETPYFLANTS-------------------EKTRELVRKYGLRNS 424

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             + IAPT T++ + G+S  I+P Y N Y +   S   T V            ++ + + 
Sbjct: 425 QLLTIAPTGTLSTMLGISGGIEPVYANSYQRKTESLHGTDV---------YYKVYTKIVD 475

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
             +K       +     + L     TA  +D    I+  S  Q  ID + S  +   +  
Sbjct: 476 EYMK------QHGITEENALPGYFVTAMMLDYHQRIDMQSIWQTHIDASISSTVNVPNSF 529

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + ++ + +Y  AW  GLK     R     +   +T
Sbjct: 530 TVEETESLYLYAWERGLKGITIYRDGCKRTGVLTT 564


>gi|149408188|ref|YP_001294622.1| hypothetical protein ORF029 [Pseudomonas phage PA11]
          Length = 563

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 167/637 (26%), Positives = 257/637 (40%), Gaps = 114/637 (17%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G Q+  ++Y     G      +  + R+A   A    + +K A +F+++L       STP
Sbjct: 29  GWQLFKEKYLWEARG-----LKDTYERIAKTAAQHTDDPDKWAAKFFDVLWRGWLAASTP 83

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            L N GT      SC    + D + G + A  E AML K   G       +R  G+ I  
Sbjct: 84  VLSNMGTIKGMPVSCSGQYIEDSIDGFYSAYHETAMLTKNGFGTSGYLGDIRPRGSIIS- 142

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T GK+ G +P  K        V QG  R+GA   YL   H D  E +D  KN  DD    
Sbjct: 143 TGGKASGTLPIFKHFVQDMRDVAQGTSRRGAWAGYLPIDHGDFYEIVDYLKNFPDD---- 198

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             +N    +   F+ R+                                           
Sbjct: 199 --LNIGWNLSQAFIDRLEVGD--------------------------------------- 217

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSS 593
              + AV  +++ + +   TG  +    D  N  +PQ +      V +SNLCTEITL S 
Sbjct: 218 ---VDAVQRFQRAMYVKAITGKGYFFKPDTVNAMNPQVYKDRGLEVKASNLCTEITLFSD 274

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT------IEKAK 647
            + T  C L S+NL       ++D  K    +  +   LD V              EK+ 
Sbjct: 275 EDHTFTCVLSSMNL------EKYDEWKNTDAVFVSTVFLDCVAQEFIRLAKGQKGFEKSV 328

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     RA+GLG +GF + L    IP  S EA  I  E  + +   A  A+  +A+  G 
Sbjct: 329 RFTEASRALGLGALGFHTYLQAKMIPLESFEAHMINLEIFQHLHEEATRATKWMAKAWGE 388

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
               KG                                           G+RN++ +AIA
Sbjct: 389 PEWCKG------------------------------------------YGVRNTHLLAIA 406

Query: 768 PTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           P  + A ICG VSQ I+P   NLY +   +G+   VN   +N  K+R  W + ++ DL  
Sbjct: 407 PNTSSALICGGVSQGIEPVVANLYNQPTSAGEIYRVNPVFLNLAKKRVGWTDELVKDLIK 466

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
            +GS+ +++ +    K +  TA+E+D   L+  A+ RQ +I QAQS+NL+ D   S   +
Sbjct: 467 SEGSVQHLDWLSPKEKAVFKTAYEVDQAALVRLAAARQPYICQAQSINLFFDANESEAYI 526

Query: 886 DFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDG 921
             I+++A L   +K+ YY+R+++     K   +   G
Sbjct: 527 AQIHKEALLNPQIKSLYYMRTKAGVQASKGECEACSG 563


>gi|66732767|gb|AAY53358.1| gp55 [Listeria phage P100]
          Length = 449

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 222/455 (48%), Gaps = 25/455 (5%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           I+ D+G   + F   RL   ++        ++ +    +    +   D  S  ++   LI
Sbjct: 4   IVKDNGSRKLPFEEDRLNRYLDNIKKEFPKLNIESYRKKAIHYILSKDEYSVDEMVDYLI 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P +     R  L++L ++          K   +++   Y  Y       
Sbjct: 64  REAESRVDVTTPEWEFFATRLYLQRLYKKA--------SKNRFYDVIMKYGSYVGLHESL 115

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQ 318
            + G+ +  + E     +L+     +   +D  F Y GL +L  RY       ++ E+PQ
Sbjct: 116 AQRGIYSVDILEKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQ 175

Query: 319 AFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             ++ +A+ L   E E + K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV 
Sbjct: 176 ERWLTIALFLMQDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVD 235

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A ++K  GG+G     VR  GA I G  G S G +P++K  N+TAV+
Sbjct: 236 DSLQGIYDSNTDVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVS 295

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G RKGA+   L+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V    
Sbjct: 296 VDQLGARKGAITVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRG 355

Query: 498 GWTLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKML 550
            W LF P EV      Y +++        +  E YE     G I   +++ A+ + ++++
Sbjct: 356 EWYLFDPYEVKQKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK-KRVKALDMMKRIM 414

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               ETG P++ ++D  N  +P  H G++++SNLC
Sbjct: 415 ISQLETGTPFMFYRDTVNRANPNSHAGMIYASNLC 449


>gi|38639972|ref|NP_943927.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414661|gb|AAQ17704.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 473

 Score =  320 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/455 (24%), Positives = 186/455 (40%), Gaps = 20/455 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   +F  K+L  I+  A +G + +    +L+    ++ DG+S  +++   I 
Sbjct: 1   MLVRKSSGITENFEPKKLLKILGFATAGTR-IDPNEILNGIMPSITDGMSTKNIQKLAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E  +Y  V AR  +  +R++V    +       H              +++G
Sbjct: 60  FAADRISIEQSDYQYVAARLQMYAIRKDVYNQ-FDPIHLKRH----------TLDLVQDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +  + L     D +   L   +K++RDF   Y G+    ++Y           E PQ  +
Sbjct: 109 IYDKDLAIKWTDDEFNELNAYIKHDRDFDLAYAGVMQFKEKYLAKDRSTDQIYETPQILY 168

Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L   E T++  +   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQDEKTDRIAKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIESGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  LF +R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRQLDYGIQINKLFFERLKNDDYIT 348

Query: 501 LFSPD-EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSPD +  +L+DL+ K+     E YE   +       ++I A  L+         TG  
Sbjct: 349 LFSPDVQNGELYDLFYKDPVKFKELYEMLENEP-WCRKKRIKASELFNLFAQERTGTGRI 407

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  F D     S   +   +   NLC EI L +  
Sbjct: 408 YPMFVDNV--NSATPYKEPIRMGNLCIEIALPTVP 440


>gi|257052366|ref|YP_003130199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
 gi|256691129|gb|ACV11466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
          Length = 1039

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 147/677 (21%), Positives = 249/677 (36%), Gaps = 117/677 (17%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A      E+ A EF +L+ +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +
Sbjct: 135 ADVREHVEETATEFQDLMENLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAK 194

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E A + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA 
Sbjct: 195 EAAQVFQSGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQ 254

Query: 449 CAYLETWHIDVEEFLDLRKNTG------------------------------DDRRR--- 475
              +   H DV +F+  +                                  DD  R   
Sbjct: 255 MGVMRVSHPDVIQFIHAKNKDVSLARTLRLNDPDDFTHTSFSDALEEARELIDDDGRVPE 314

Query: 476 ---------THDMNTANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKE 517
                      + N +  I D FM  +  +  +T  +P          E  +L+D++G  
Sbjct: 315 HLRNAVEGHLSNFNISVGITDEFMDALQNDEEFTFTNPRTGDPHIVTAETKELYDMFG-- 372

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                       +  E+     I A  LW  ++    E G P + + +  N         
Sbjct: 373 ----------LGEYVEVGEELSIPASELWDDIVEGAHENGEPGVIYLERANKEHSFDVEE 422

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY------------------- 618
                 L T        EE   CNLG INL    A    D+                   
Sbjct: 423 NSDHRILATNPCGEQPLEEYEACNLGHINLSTLAAEGAPDWRVWSERHADDYDDFEAAVE 482

Query: 619 ---------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                    ++L   I  A R L+NV+ ++   +EK ++     R IGLG+MG       
Sbjct: 483 AYLDEAIDVEELEYRIEMATRFLENVVTMSDFPVEKIEEKVRDMRKIGLGIMGLAQLFIQ 542

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y S E   IA   M+ I+  +  AS ELA+ERG ++ ++ S +     P +     
Sbjct: 543 LGVKYGSDEGDAIAGHLMQKINHDSKWASHELAEERGVFNDWEDSKYAD---PTEYREWF 599

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                E A        W E         +RN N   IAPT T + +   +   +P Y   
Sbjct: 600 EHYVGEDA------DDWAE------GFPIRNHNTTTIAPTGTTSMVGNTTGGCEPVYNVA 647

Query: 790 YVKSNMS---GDFTVV--NSFLVNELKQRDLWDEAMISDLKYHDGS-----IGNIERIPD 839
           Y K+      GD  +V  + + +  L++  +  E +  + +    +     +  +  +PD
Sbjct: 648 YYKNVSDDVQGDEMLVEFDDYFLRVLEENGIDVETVKEEAQEQMATNEFDGVEGLSTVPD 707

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK 898
            + ++  T  ++ P          Q  +D A S  +      + +    ++   +  G K
Sbjct: 708 AIGELFVTTGDLSPKQHASIQCTLQDGVDSAISKTVNAPNDSTIEDAKDVFEYIYEHGGK 767

Query: 899 TTYYLRSRSATSVEKST 915
              Y R  + +    +T
Sbjct: 768 GVTYYRDGTRSKQVLTT 784


>gi|225019985|ref|ZP_03709177.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
 gi|224947349|gb|EEG28558.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
          Length = 757

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 142/645 (22%), Positives = 252/645 (39%), Gaps = 98/645 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I  ++Y         E   ++  R++ G           + +   L+    F+   
Sbjct: 13  LGIDIWTNKYCFEN-----ESFDSWLDRISGG-----------SEQVRQLIIDKKFLFGG 56

Query: 356 PTLFN-----SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N      G +    +   ++   D++  IF    + A    Y GG G D + +   
Sbjct: 57  RILSNRGLQNLGKKVSLSNCYVISPPEDNIESIFECATKLARTYSYGGGCGTDISGLSPR 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I+    ++ G + F+ + +     + Q G R+GA+   +   H DVEEF+ ++ N  
Sbjct: 117 GAKINNAARETSGSVSFMDLYSLITELIGQNG-RRGALMLSISCSHPDVEEFIKVKTN-- 173

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
               +    N +  I + FM+ V  +A +TL      +  H                   
Sbjct: 174 --LEKVTKANISVRITNDFMQAVKDSAEYTLEFTRVETGEH------------------- 212

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                + RK++A  L+R +    ++   P   F D  +  +   +         N C E 
Sbjct: 213 -----IERKVNARELFRLIAETNWDFAEPGALFWDRISSWNLLSNNKEFRYAGVNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINC--H 641
            L +       C LGSINL          N +FD+     T+  + R L++V++     H
Sbjct: 268 PLPAGGS----CLLGSINLSEFVTDPFTENARFDFAAFKETVAVSTRALNDVLEEGLPLH 323

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+ ++S    R IGLG+MG    L  L I Y   EA++++D+    ++  AI+ S  L
Sbjct: 324 PLEEQRESVSNWRQIGLGIMGLADMLVKLGITYGEQEAIDLSDKIGFAMADTAIAESARL 383

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A++              G FP  +I  + E     A      L      + VK  G+RNS
Sbjct: 384 AKQH-------------GAFPKCNIEEIIETPYFQANTSPKTL------ELVKKYGLRNS 424

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             + IAPT T++ + G+S  I+P Y N Y +   S     V            ++   + 
Sbjct: 425 QLLTIAPTGTLSTMLGISGGIEPIYANFYERKTESLHGKDV---------YYKVYTPIVD 475

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP- 880
             +K H+  I +   +P+       TA  +D    I+  +  Q+ ID + S  + +    
Sbjct: 476 HFMKEHE--ILDDSSLPE----FFVTAMTLDYRQRIDMQAAWQQHIDASISSTVNVPNQF 529

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           + ++ + +Y  A+  GLK     R     +   +T       + A
Sbjct: 530 TVEETEDLYMYAYDQGLKGITIFRDGCKRTGILTTDSSKKDTVIA 574


>gi|331082220|ref|ZP_08331347.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403014|gb|EGG82579.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 755

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 137/632 (21%), Positives = 249/632 (39%), Gaps = 88/632 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y      +  E  +++  R++ G      E+  + ++    L     + + 
Sbjct: 13  LGMDIWNKKY-----RNEEEDFESWITRISGG-----NEEIAKYIKEKKFLFGGRILSNR 62

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                 G +    +   +    D++  IF   ++ A    Y GG G D + +   GA I+
Sbjct: 63  GLDKQ-GKKVTYSNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKIN 121

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ G + F+++ +     + Q G R+GA+   ++  H DV EF++L+     D  +
Sbjct: 122 NAAKETSGAVSFMELYSLVTSLIGQNG-RRGALMISIDCSHPDVPEFIELKT----DLEK 176

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            +  N +  I + FM+ V +N  + L    E                             
Sbjct: 177 VNTANISVRIHEDFMEAVKKNEEYCLHYTRE------------------------ETGQV 212

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEITLNSS 593
           + R ++A  L+ ++    ++   P   F D     +   +         N C E  L + 
Sbjct: 213 IERMVNARELFHRITETNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEEPLPAG 272

Query: 594 SEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKA 646
                 C LGSINL A   N       FD+++    ++ +VR L+ V++     H + + 
Sbjct: 273 GS----CLLGSINLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQ 328

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++S    R IGLG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E G
Sbjct: 329 RESVSQWRQIGLGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELG 388

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+   K             +  + E    LA            K+ V+  G+RNS  + I
Sbjct: 389 AFPKCK-------------VEEIMETPYFLANTTEGT------KELVRKYGLRNSQLLTI 429

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT T++ + G+S  I+P Y N Y +   S     V            ++ + +   ++ 
Sbjct: 430 APTGTLSTMLGISGGIEPIYANYYERKTESLHGEDV---------YYKVYTKIVKDFMEE 480

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           H  S   +      L     TA  +D    I+  S  Q+ ID + S  + +    + ++ 
Sbjct: 481 HKVSDDRL------LPDYFVTAMTLDYHQRIDMQSIWQRHIDASISSTVNVPSGFTVEET 534

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +Y  A+  GLK     R         +T +
Sbjct: 535 ENLYLYAFEQGLKGITIFRDGCKRVGILNTKE 566


>gi|205374047|ref|ZP_03226847.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           coahuilensis m4-4]
          Length = 849

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 163/733 (22%), Positives = 274/733 (37%), Gaps = 124/733 (16%)

Query: 312 SRIE-MPQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPT--LFNSGTRH 365
             +E   +    R A GLA  E  +E R   F   YN L    F+ +        +GT  
Sbjct: 125 KPLEIYYEQIAKRNATGLASAEKTEELRQEWFQKFYNELVHLRFVPAGRVLYGAGAGTDV 184

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 185 TYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSSGSV 244

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDDRR 474
            +L         V QGG R+GA    L  WH D+ EF+            L + T D+  
Sbjct: 245 SWLDDIAKLTHLVEQGGSRRGAQMIMLSDWHPDIVEFIISKMQNPRILRFLLEQTEDEHI 304

Query: 475 RTHDMNTANWIP-----------------------------DLFMKRVTQNAGWTLFSPD 505
           R    N   + P                                 +++++   +T+ + +
Sbjct: 305 RKAATNKLKFTPLTAQEKSMYQGILNYKSIPGCGGFEAGVIRDAEEKLSKGGTYTVHNAE 364

Query: 506 EVSD------LHDLYGKEFEI---------AYENYERQADRGEIKVFRKISAVALWRK-- 548
            ++       L D + K  E            E+Y  +  +   + + ++  V  W K  
Sbjct: 365 FLTGANISVCLTDDFMKAVEEDRDYELRFPDVESYNEEQMKYYNENWHQVGDVREWEKQG 424

Query: 549 -----------------MLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
                            +      +  P I F D  N ++     G  V ++N C E  L
Sbjct: 425 YAVRTYRTIRAKELWNLINICATYSAEPGIFFIDNANDKTNATAYGQKVVATNPCGEQPL 484

Query: 591 NSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +VCNL +INL   A+  +   D++KL  T+   VR+ DNVID   + +E  KK
Sbjct: 485 AP----YSVCNLAAINLAEFANKESKTVDFEKLKQTVAIGVRMQDNVIDATPYFLEDNKK 540

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S E  ++ D+  E I+  A   S++LA+E+G++
Sbjct: 541 QALGERRVGLGVMGLADLLIYCEKEYGSEEGNQLVDQVFEVIATTAYRESIDLAKEKGSF 600

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
              +GS  ++          L +   E    +        +++ + T G+RNS+ + +AP
Sbjct: 601 PFLEGSTEEE-------TNRLRQAFTETGYMKGMPED---IREDILTYGIRNSHLLTVAP 650

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GVS  ++P +   Y +S   G F  V + +V E                   
Sbjct: 651 TGSTGTMVGVSTGLEPYFSFTYYRSGRLGKFIEVKADIVQEYLDH--------------- 695

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
               + +  P  L    ATA  + P    +     Q+WID + S  +   +  + ++++ 
Sbjct: 696 ----HPDADPHALPHWFATAMSLKPEAHADVQCVIQRWIDSSISKTVNAPKGYTVEQVEK 751

Query: 888 IYRQAWLMGLK--TTYYLRSRSATS----VEKSTLKGVDGKLNA-VPVTDPNSSTHSLGI 940
           +Y + +  G K  T Y   SR A       E +T +       A V + D      S  +
Sbjct: 752 VYERLYKGGAKGGTVYVDGSRDAQVLTLKAEDNTFEEEHKTEEAKVVLVDTIQELRSTNV 811

Query: 941 PSSCTSDTECEVC 953
                    C VC
Sbjct: 812 TIGSEVGNTCPVC 824


>gi|260588503|ref|ZP_05854416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260540978|gb|EEX21547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 760

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 137/632 (21%), Positives = 249/632 (39%), Gaps = 88/632 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LG+ I   +Y      +  E  +++  R++ G      E+  + ++    L     + + 
Sbjct: 18  LGMDIWNKKY-----RNEEEDFESWITRISGG-----NEEIAKYIKEKKFLFGGRILSNR 67

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                 G +    +   +    D++  IF   ++ A    Y GG G D + +   GA I+
Sbjct: 68  GLDKQ-GKKVTYSNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKIN 126

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ G + F+++ +     + Q G R+GA+   ++  H DV EF++L+     D  +
Sbjct: 127 NAAKETSGAVSFMELYSLVTSLIGQNG-RRGALMISIDCSHPDVPEFIELKT----DLEK 181

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            +  N +  I + FM+ V +N  + L    E                             
Sbjct: 182 VNTANISVRIHEDFMEAVKKNEEYCLHYTRE------------------------ETGQV 217

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEITLNSS 593
           + R ++A  L+ ++    ++   P   F D     +   +         N C E  L + 
Sbjct: 218 IERMVNARELFHRITETNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEEPLPAG 277

Query: 594 SEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC--HTIEKA 646
                 C LGSINL A   N       FD+++    ++ +VR L+ V++     H + + 
Sbjct: 278 GS----CLLGSINLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQ 333

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++S    R IGLG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E G
Sbjct: 334 RESVSQWRQIGLGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELG 393

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+   K             +  + E    LA            K+ V+  G+RNS  + I
Sbjct: 394 AFPKCK-------------VEEIMETPYFLANTTEGT------KELVRKYGLRNSQLLTI 434

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT T++ + G+S  I+P Y N Y +   S     V            ++ + +   ++ 
Sbjct: 435 APTGTLSTMLGISGGIEPIYANYYERKTESLHGEDV---------YYKVYTKIVKDFMEE 485

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           H  S   +      L     TA  +D    I+  S  Q+ ID + S  + +    + ++ 
Sbjct: 486 HKVSDDRL------LPDYFVTAMTLDYHQRIDMQSIWQRHIDASISSTVNVPSGFTVEET 539

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           + +Y  A+  GLK     R         +T +
Sbjct: 540 ENLYLYAFEQGLKGITIFRDGCKRVGILNTKE 571


>gi|292656576|ref|YP_003536473.1| ribonucleoside-diphosphate reductase [Haloferax volcanii DS2]
 gi|291372162|gb|ADE04389.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloferax volcanii DS2]
          Length = 1033

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 145/662 (21%), Positives = 249/662 (37%), Gaps = 117/662 (17%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L+    FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G  
Sbjct: 151 ELMEQLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQSGGGMGYA 210

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +FL
Sbjct: 211 FWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVSHPDVIQFL 270

Query: 464 D-----------LRKNTGDDRRRTH-------------------------------DMNT 481
                       LR N  DD   T                                + N 
Sbjct: 271 HAKNKDVSLAHTLRLNDPDDFTHTKFVDALDEARELIDEDGRVPKHLRNAVEGHLSNFNI 330

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDE---------VSDLHDLYGKEFEIAYENYERQADRG 532
           +  I D FMK +  +  +   +P             +++D++G              +  
Sbjct: 331 SVGITDGFMKALYNDEEFVFTNPRTEEPHVATPQTKEIYDMFG------------LGEYV 378

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+     + A  LW +++   +E G P + + +  N               L T      
Sbjct: 379 EVGEVLSVPAKELWDQIIEGAWENGEPGVVYLERANKEHSFDVEKHPDHQILATNPCGEQ 438

Query: 593 SSEETAVCNLGSINLLAHFA----------------------------NNQFDYDKLAST 624
             EE   CNLG INL    A                             +  D+++    
Sbjct: 439 PLEEYEACNLGHINLSTLVAEDSPDWRVWYDAHSDEYDSLEAATEAFLEDAVDWEEFNHR 498

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I +  R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EIA 
Sbjct: 499 IESGTRFLENVVTMSDFPVEKIEEKVRELRKIGLGIMGLAQLYIQLGVRYGSDEGNEIAQ 558

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           + M  I+  +  AS ELA+ERG + +++ S +     P +          E A       
Sbjct: 559 QLMTHINHGSKRASHELAEERGPFEAWEDSKYAN---PTEYREWFEHHTGEDA------D 609

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTV 801
            W++         +RN N   IAPT T + +   +   +P Y   Y K+      GD  +
Sbjct: 610 DWED------GYPIRNHNTTTIAPTGTTSMVSNTTGGCEPIYNVAYYKNVSDDVQGDEML 663

Query: 802 V--NSFLVNELKQRDLWDEAMISDLKYHDGSIG-----NIERIPDDLKKIHATAFEIDPM 854
           V  + + +  L+  D+  EA+  + +    S       ++  +PD + ++     ++  +
Sbjct: 664 VEFDDYFLRVLEANDIDVEAVKQEAQEQMASNQFDGLSSLSTVPDAISELFVVTSDLAGI 723

Query: 855 WLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
                    Q  +D A S    + +  S + +D +YR  +  G K     R  + +    
Sbjct: 724 EHAGVQCALQSGVDSAISKTCNFPNSASKEDMDEVYRYIYDHGGKGVTVYRDGTRSKQVL 783

Query: 914 ST 915
           +T
Sbjct: 784 TT 785



 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 304 RYFLHI-NGSRIEMPQAFFMRVAMGLALKET--EKEKRAVE 341
           RY     +G  +E  +  F RVA  +AL E   E EKR +E
Sbjct: 39  RYLRKDADGDLVETQEDLFPRVAKNIALAEAVFEAEKRDIE 79


>gi|13095638|ref|NP_076553.1| ribonucleotide reductase large subunit [Bovine herpesvirus 4]
 gi|12802588|gb|AAK07980.1|AF318573_60 ribonucleotide reductase large subunit [Bovine herpesvirus 4]
          Length = 793

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 170/821 (20%), Positives = 307/821 (37%), Gaps = 108/821 (13%)

Query: 197 DLETALIFSSRTLIEKEPNYAK----VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           D +  +I      ++    +      +  R    KL   V+TT  K        ++    
Sbjct: 18  DQDLEVIEKCVDNLKISAGWNIEDNMIAGRLY-HKLMDHVVTTSMKSYLDFFKSKLSPDV 76

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
             +     EE      L    + + +    ND+          L  +  YD Y L   G 
Sbjct: 77  GSFMENNAEE------LDSMCLRYQMSSTYNDI-----LNCGILAAKRFYDTYLLRTPGP 125

Query: 313 --RIEMPQAFFMRVAMGLA----------------------LKETEKEKRAVEFYNLLSS 348
               E    F+ R+++  A                       + +        F+  ++S
Sbjct: 126 NPIFESIPHFYTRISVFCAVQCLRFSYLKTTIQATIKKNNNREASTDMDIVHYFFGFIAS 185

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
               C+TP L ++G     L+SCF+ +             E + +      L    +   
Sbjct: 186 QVVCCATPVLRSAGVESENLASCFIVSPE--------MYSETSTITSLYSRLFPLLSSKS 237

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G+G  I       + +   LK+ N      N    R  +V  Y+E WH+ + EFL  +  
Sbjct: 238 GVGMDITSFANDQKNIHSCLKLINAHVEFFNDHNIRPVSVATYIELWHVQIFEFLYAKVP 297

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              D  R   +  A  +P LF K   ++    W LF P +V  L  LYGKEFE  Y    
Sbjct: 298 ENSD--RCASIFQAVCVPSLFFKLYEKDPMGSWHLFDPSDVPGLKLLYGKEFEDEYHKLV 355

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLC 585
           +          +++   ++   ++  + +TG P++  K+  N     +  G  ++++NLC
Sbjct: 356 Q-----SQLFVKEVPLKSIMFSLINTIIKTGSPYVILKEAINQHHWCETQGEAINAANLC 410

Query: 586 TEITLNSSSEETAVCNLGSINLLAHF--------------ANNQFDYDKLASTIRTAVRV 631
            EI  +S     A C+L +I L                      F +  L   +  AV V
Sbjct: 411 AEIVQHSGR-HVATCSLANICLPKCLEGLDFLTQCHGGTPVKKTFSFQLLTRAVEAAVFV 469

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++  I      +++ K+     RA+G+G+ G       L   Y   E+  +     E + 
Sbjct: 470 INAAIVGGHCVLDEVKRG-QGERAMGIGVQGLADVFAELGYGYLDKESEILDRHIFECMY 528

Query: 692 FHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           + A+  S ++ +  G   +  F  S   +G+F         E+ D + +   S+  W  L
Sbjct: 529 YSAVKTSHDIVRIGGGVPFEGFDRSKLKRGLFHWQEW----EIEDPMLI---SQDMWLNL 581

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            K +   G+ NS  +A+ PTA  + I G S++  P + N+  K +   +    N   +  
Sbjct: 582 GKSISQFGIFNSQFIALMPTAGTSQITGHSEAFYPFFANMSSKVSNKEEIMKPNITFLKS 641

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++RDL        +++++G +           +I   AF+  P   ++ A +R  ++DQ
Sbjct: 642 VRKRDLDT------VRFYNGDVSRFPEPLAKRYQIFLNAFDYCPFEQMKRARQRAPFVDQ 695

Query: 870 AQSLNLYLDEPSGK---KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925
           +QS +L+L E + K    L  +    + +GLKT  YY R +   +V          + + 
Sbjct: 696 SQSFSLFLKEENVKSASYLKNLLLYGYNLGLKTIMYYCRIQKEFTVSDFQCLDTGCQFDE 755

Query: 926 VP------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            P              +PN  T +   P    S  +C+ CQ
Sbjct: 756 DPDNQNKCEETHNKSQEPNYKTEA---PCQLDSSPQCDCCQ 793


>gi|15790595|ref|NP_280419.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|169236332|ref|YP_001689532.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581113|gb|AAG19899.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727398|emb|CAP14186.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 1051

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 150/684 (21%), Positives = 259/684 (37%), Gaps = 107/684 (15%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A EF +L++S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  G
Sbjct: 144 AAEFQDLMASLSFMPNSPTLMNAGDELQQLSACFVDSPDDDITDIHQTAKEAAEVFQSGG 203

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G  +  +R  G  +  T G + G + F++  +     + QGG R+GA  A +   H D
Sbjct: 204 GMGYAFWQLRPYGDTVGSTGGIASGPLTFMETFDQMCETIAQGGARRGAQMAVMRVSHPD 263

Query: 459 VEEFLDLR------------------------------KNTGDDRRR------------T 476
           V EF+  +                              ++  D+  R             
Sbjct: 264 VVEFIHAKNKDVSLAQTLKLNDPDDYTYTEFSEALEEARDLIDEDGRVPEHLRNAVEGHL 323

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  + D FM+ +     +T  +P    + H       E   E Y R      +  
Sbjct: 324 SNFNISVGVTDGFMEALEAGEEYTFTNPRTG-EAH----IATEETKEMYSRYGLGHYVTP 378

Query: 537 FR--KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
                + A  LW +++    E G P + + +  N               L T        
Sbjct: 379 GEELTLPAEELWSRIVEGAHENGEPGVIYLERVNDEHSFDVEEHPDHRILATNPCGEQPL 438

Query: 595 EETAVCNLGSINL--------------------------LAHFANNQFDYDKLASTIRTA 628
           EE   CNLG INL                          ++ F +   D D     I   
Sbjct: 439 EEYEACNLGHINLSTLAAQDAPDWRVWSQTHDFDTLEAGVSRFLDEAMDTDAFQRRIEMG 498

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+NV+ ++   + + ++     R IGLG+MG       L + Y S E  EIA + M+
Sbjct: 499 TRFLENVVTMSDFPVPEIEQKVSEMRKIGLGVMGLAQLYIQLGVKYGSEEGNEIASQLMQ 558

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I+  + +AS ELA ERG++  +  S +     P +          E A        W +
Sbjct: 559 TINHDSKTASHELALERGSFDEWDNSKFAA---PTEYADWFEHHTGEDAA------DWAD 609

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVV--N 803
                    +RN N   IAPT T + +   +   +P Y   Y K+      GD  +V  +
Sbjct: 610 ------GYPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFD 663

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDG-----SIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            + +  L+  D+  +A+  + +          +  +  +PD + ++     ++       
Sbjct: 664 DYFLRTLEDNDIDVQAVKEEAQTQMANNDFDGVDGLTTVPDAIGELFVVTSDLSGKDHAA 723

Query: 859 SASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLR--SRSA----TSV 911
             +  Q  +D A S    + ++ S + +D +YR  +  G K     R  +RS     T  
Sbjct: 724 VQTACQNGVDSAISKTCNFPNDASVEDMDEVYRYIYDNGGKGVTVYRDGTRSKQVLTTRA 783

Query: 912 EKSTLKGVDGKLNAVPVTDPNSST 935
           + +   G+D +  A  + D    T
Sbjct: 784 DNTEFSGLDEEEAAAAMVDTIQET 807



 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 304 RYFLHI-NGSRIEMPQAFFMRVAMGLALKE 332
           RY     +G  +E  +  F RVA  +AL E
Sbjct: 39  RYLRKDTDGEHVESQEDLFERVAKNIALAE 68


>gi|55378393|ref|YP_136243.1| ribonucleoside-diphosphate reductase subunit alpha [Haloarcula
           marismortui ATCC 43049]
 gi|55231118|gb|AAV46537.1| ribonucleoside-diphosphate reductase alpha chain [Haloarcula
           marismortui ATCC 43049]
          Length = 1032

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 144/662 (21%), Positives = 246/662 (37%), Gaps = 117/662 (17%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
             +    FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G  
Sbjct: 150 EQMEQLSFMPNSPTLMNAGDELQQLSACFVDSPGDDIDDIHQTAKEAAQVFQSGGGMGYA 209

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +F+
Sbjct: 210 FWKLRPYGDPVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVIQFI 269

Query: 464 D-----------LRKNTGDDRR-------------------------------RTHDMNT 481
                       LR N  DD                                    + N 
Sbjct: 270 HAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDDDGQVPKHLRNAVEGHLSNFNI 329

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKEFEIAYENYERQADRG 532
           +  + D FM+ +     +T  +P          E  +L+D++G              +  
Sbjct: 330 SVGVTDDFMEALKAGEEFTFTNPRTGDAHIVTEETKELYDMFG------------LGEHV 377

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+     I A  LW  ++    E G P + + +  N +             L T      
Sbjct: 378 EVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVNKQHSFDVEEHPDHEILATNPCGEQ 437

Query: 593 SSEETAVCNLGSINLLAH----------------------------FANNQFDYDKLAST 624
             EE   CNLG INL                               F     D+D+    
Sbjct: 438 PLEEYEACNLGHINLSTLAATDAPDWRVWSEAHADEYDSIDAAIDAFLEEAIDWDEFDRR 497

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I    R L+NV+ ++   +EK ++     R IGLG+MG       L + Y + EA EIA 
Sbjct: 498 IELGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGVAYGTEEANEIAR 557

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           ++M  I+  + +AS ELA+ERG ++ ++ S +     P D      +   E A       
Sbjct: 558 QTMRHINHGSKAASHELAEERGVFTEWENSKYAN---PTDYSDWFEKQTGEDAA------ 608

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTV 801
            W++         +RN N   IAPT T + I   +   +P Y   Y K+      GD  +
Sbjct: 609 DWED------GYPIRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNVSDDVQGDEML 662

Query: 802 V--NSFLVNELKQRDLWDEAMISDLKYHDG-----SIGNIERIPDDLKKIHATAFEIDPM 854
           V  + + +  L+  D+  EA+  + +          +  +  +PD + ++  T  ++   
Sbjct: 663 VEFDDYFLRALEDNDIDVEAVKQEAQEQMANNEFDGVDGLTTVPDAIGELFVTTGDLSAK 722

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
                    Q+ +D A S  +      + +    ++   +  G K   Y R  + +    
Sbjct: 723 QHAGIQVACQEGVDSAISKTVNAPNDSTTEDAAEVFEYIYDHGGKGVTYYRDGTRSKQVL 782

Query: 914 ST 915
           +T
Sbjct: 783 TT 784



 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 304 RYFLHI-NGSRIEMPQAFFMRVAMGLALKET 333
           RY     NG  IE P+  F RVA  +AL E 
Sbjct: 39  RYLRKDANGDLIEGPEDLFDRVAKNIALAEA 69


>gi|258646860|ref|ZP_05734329.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
 gi|260404299|gb|EEW97846.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
          Length = 622

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 146/674 (21%), Positives = 263/674 (39%), Gaps = 95/674 (14%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           IL  +Y+    G     PQ F  RV+           +  ++ Y  ++   F  +  TL+
Sbjct: 13  ILEAKYY--HEGET--TPQQFIDRVS----SVFKGDFRERMKKY--ITDGDFSPAGRTLY 62

Query: 360 NSGTRHP---QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
            +G+R      +S+C++   P D+L  IF +  E A +  Y GG+G + + +R  G+ +H
Sbjct: 63  AAGSRGKFKVSMSNCYILPSPEDNLESIFHSNYEIARIFSYGGGIGINISNLRPAGSRVH 122

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
                S G + F+K+ N T   ++Q G R+GA    L   H D+ EFL +++N      +
Sbjct: 123 NVARTSTGAVSFMKIFNTTGEVISQNG-RRGAQMVGLNCSHPDIYEFLHIKQNE----EK 177

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              MN +    D FM+ V  +  +TL                 E   EN E         
Sbjct: 178 LSSMNISILFTDEFMEAVRDDKEYTLRF-------------HVESTGENIE--------- 215

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSS 593
             R I A   +R+     ++ G P   F D  N            +  +N C E   N+ 
Sbjct: 216 --RTIRARDFFREFCETQWDWGDPGALFSDRLNDYHLLAGYDEYQIEITNPCGEFGGNAY 273

Query: 594 SEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCH--TIEKA 646
           +     CNLGSINL     +        + +K    +   +  LD ++        +++ 
Sbjct: 274 N----ACNLGSINLYNMIDDKFGNAPSLNEEKFKQAVYDGIIALDEIVSYGYETQPLDEN 329

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +      R++GLGL G   AL  + + Y S EA    +  M+ +   A+ +S + A+ +G
Sbjct: 330 RTCIDDWRSLGLGLFGVADALVAMKLAYGSREASAFMENVMKIMLLSALRSSCDRAKMKG 389

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  ++    ++       I ++ E+                L + ++T G+RN   +AI
Sbjct: 390 TFGRYRREATEKSPI----IQMVKELDGG-------------LYEDIRTYGLRNGTLLAI 432

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNM-----SGDFTVVNSFLVNELKQRDLWDEAM 820
           APT TI+ + G  S   +P Y+  Y +S       +G F V    + + L+ R L     
Sbjct: 433 APTGTISLLMGSFSGGCEPLYKISYERSTHKMEEVNGSFRVYAHSVKDLLRYRHLPLTLT 492

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
             +++         E+ P  ++     + ++  M  +   +  QK++D + S  +   ++
Sbjct: 493 DDEIR---------EKFPWVIE-----SHDVSFMDRVAMQAVMQKYVDNSISSTVNLKND 538

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            + + +  IY  AW  G K     R               + K +  P            
Sbjct: 539 ATPEDIYDIYLAAWESGCKGITVFRDGCRRGNILGIAAKKEEKADG-PKPAEGQPVCPEC 597

Query: 940 IPSSCTSDTECEVC 953
              +   +  C  C
Sbjct: 598 GGKNIRVEGHCAAC 611


>gi|254436965|ref|ZP_05050459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
 gi|198252411|gb|EDY76725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
          Length = 492

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 225/564 (39%), Gaps = 88/564 (15%)

Query: 358 LFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +   GT       ++  + T+PD + GI   L++ A+  +  GG+G D++ +R  G  +H
Sbjct: 1   MSGCGTARNVTLSNTFVMRTIPDSVDGIMDTLKDGALTMQMGGGVGFDFSTLRPSGTVVH 60

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G + ++ G +  + + + T   +  G  R GA+ A +   H D+E F+  +     DR R
Sbjct: 61  GLDCRAAGPLAAMDIFDVTCKMIVSGMGR-GAMMATMRCDHPDIEAFIVAK----SDRSR 115

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +  + D FM  +  +  W L                               E  
Sbjct: 116 LRNFNLSVMVTDAFMAAIAADTTWDLVW-----------------------------EGA 146

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           + R++ A  LW  ++   +    P + F D  N  +P +++  + ++N C E  L  +  
Sbjct: 147 IMRRLRARDLWNAIMKQTYAAAEPGVLFIDKINAANPLRYLENIAATNSCAEQPLPPN-- 204

Query: 596 ETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               C L SINL          + + D  +L   +R AVR+LDN +D++   +E  K+  
Sbjct: 205 --GTCPLASINLAQLVSAPFTPDARLDVVQLRQLVRVAVRMLDNSLDVSRFALEAQKQQA 262

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IG+G+ G  +A+ +L   Y S +AV +    M+ I   A  AS  LA+ERG +  
Sbjct: 263 KDQRRIGIGVTGVANAIAMLGARYGSSKAVFLLGSWMQTIQNAAYGASALLAKERGVFPR 322

Query: 711 FKGSLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           +        +G+  +D                       +++  V+  G+RN     IAP
Sbjct: 323 YDADKHLTSRGIQALDP----------------------DVRTLVEQHGLRNGTLTTIAP 360

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T +   G  S  I+P +   ++++    +    +  +++      +W  A I      
Sbjct: 361 TGTKSMFAGNVSSGIEPMFSTSFLRTITKPNGDKSSERVIDYA----VWRFAQI------ 410

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
               G    +PD       T  ++ P   +   +  Q+W+D   S  +   E        
Sbjct: 411 ---FGPDAPLPDS----FVTVADLSPDDHVAMQAAAQEWVDSGISKTVNCPEDIPFDTFK 463

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            IYR A+    K     R  + T 
Sbjct: 464 DIYRAAYDADCKGCTTYRPNTITG 487


>gi|17544914|ref|NP_518316.1| hypothetical protein RSc0195 [Ralstonia solanacearum GMI1000]
 gi|17427204|emb|CAD13723.1| probable ribonucleotide reductase, alpha subunit oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 617

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 140/645 (21%), Positives = 241/645 (37%), Gaps = 79/645 (12%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCST 355
             +L DRY           P+  F RVA  LA  E    +   A  FY  +       + 
Sbjct: 29  AAVLADRYLAPGET----TPEQVFRRVAHALAAAEAPDRRTHFARLFYVNMLHGAI-GAG 83

Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDD------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             + N+G      + +CF+  +            I  AL++  +  +  GG+G D++ V 
Sbjct: 84  RIMANAGVDRQATMVNCFVHPIVGPGAQVAGAADIDRALKQAQVTLRMGGGVGYDFSAVA 143

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            + A   G +G +  V   ++  + T  A+     R GA  A L   H D+  F+  ++ 
Sbjct: 144 PMDALQTGEDGGTGSVCEVIERFDHTCAALALANTRGGAQMAVLRCNHPDLAAFVAAKRG 203

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
               R+R    N +  + D FM+ V  +A W L    E S      G             
Sbjct: 204 ----RKRWTTFNVSVAVTDAFMQAVADDAQWRLQHRAEPSAQRRAAGAHL---------- 249

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                   +  + A  LW  ++     +  P + F D  N  +    +  + ++N C E 
Sbjct: 250 -LDNGHWCYATVPARQLWDMLVEAAHHSAEPGLLFIDTINAANDLAELETIAATNPCGEQ 308

Query: 589 TLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
            L +       C LG INL               FD+      +   VR+LDN IDI   
Sbjct: 309 PLPAWGS----CVLGPINLSRWIQHPFGVGGQPMFDFVSFGRAVHIQVRMLDNAIDITRW 364

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  +  H  R IG+G+ G   AL ++ +PY +PEA  +A +    +  +A +AS  L
Sbjct: 365 PLIEHMREAHAKRRIGVGVTGLADALTMMGLPYQAPEARNLAVQIGRCLRDNAYAASAAL 424

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           AQER  Y  F+                    R     +  + LP   +++ +   G+RNS
Sbjct: 425 AQERSPYPLFRAE------------------RSLAPGHFVATLP-GAVRETIARHGLRNS 465

Query: 762 NCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + +++APT +++   G   S  I+P++   Y +            + +     R      
Sbjct: 466 HLLSLAPTGSVSLAFGGNCSSGIEPAFDWAYQRRVRI-HHGQPQLYRIENHAYRCF---- 520

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
                         +      L     TA ++D    ++  +  Q +ID + S  + +  
Sbjct: 521 ------------QAMHGEHAVLPSYFVTANQVDGDDHLKMVAALQPFIDASISKTILISG 568

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             S  ++  +  +AW + LK     R   A+    S L   DG+ 
Sbjct: 569 GVSPAQVGALLFRAWQLRLKGITIFRPDPASDEVLSVLPAADGRP 613


>gi|300697572|ref|YP_003748233.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
 gi|299074296|emb|CBJ53843.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
          Length = 611

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 144/664 (21%), Positives = 242/664 (36%), Gaps = 94/664 (14%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMC 353
           +   +L +RY      +R       F R A  L+  E    +   A  FY  +       
Sbjct: 18  ISAAVLANRYLAPGETTRR----DVFKRAARALSGAEAPDRRGRIARLFYANMLRGAIGA 73

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPD-------DLYGIFGALQENAMLAKYSGGLGNDWTP 406
                     R   + +CF+  +          +  +  AL +        GG+G D++P
Sbjct: 74  GRIMANAGRARDVTMVNCFVHPIGSGASGAVATVADVDRALADARTTLLMGGGVGYDFSP 133

Query: 407 V--RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           V  R   A   G +  + GV   +   +     +     R GA  A L   H D+ +F+ 
Sbjct: 134 VAPRDANADGAGQDNNAGGVCASIDRFDAACATLPFADTRGGAQMAVLRCDHPDLLDFVM 193

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++     RRR    N +  I + FM+ V  +A W L             G         
Sbjct: 194 AKRG----RRRWSTFNVSVAITNAFMQAVAGDAPWMLRHGARPGAQRLADGA-------- 241

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R  D      +  + A  LW+ ++    ++  P + F D  N  +    +  + ++N 
Sbjct: 242 -HRLVDGDWC--YATLPARRLWQTLVQCARDSAEPGLLFIDTINAANALASIETIAATNP 298

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVID 637
           C E  L         C LG I+L              +FD+  LA   R  VR+LDN ID
Sbjct: 299 CGEQPLPPWGS----CVLGPIDLSRLVHCPFGVGGAPRFDFAGLAERARVQVRMLDNAID 354

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + +      T R IG+G+ G   AL ++ + Y +P A  +A    + +   A +A
Sbjct: 355 LTRWPLPEHMHEARTKRRIGVGVTGLADALAMMCLSYGTPAARHLATRIAQCLRDQAYAA 414

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA ERGAY +F                     R   A +  SRLP   ++  +   G
Sbjct: 415 SSALAAERGAYPAFD------------------AARILGAGSFASRLP-GAVRDAIALHG 455

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++ APT +++       S  I+P+Y  +Y++    G      ++ +     R  
Sbjct: 456 LRNSHLLSFAPTGSVSLAFADNCSSGIEPAYDWVYLRRLRVGHG-APRAYRIENRAYRLF 514

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                              +R P         A ++DP   I   +  Q ++D + S  +
Sbjct: 515 RSLR--------------GDRAPQ--PAYFVKAVDVDPAEHIAMVAALQPFVDASISKTV 558

Query: 876 YLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            +    +  ++D ++ QAW  GLK     R               D  L+ V   +P + 
Sbjct: 559 IVPPDITADRVDALFFQAWRTGLKGITIFRP--------------DPSLDDVLCAEPAAQ 604

Query: 935 THSL 938
           T S 
Sbjct: 605 TRST 608


>gi|319651515|ref|ZP_08005643.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317396830|gb|EFV77540.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 853

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 174/740 (23%), Positives = 277/740 (37%), Gaps = 132/740 (17%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  E  +EKR   F   Y  L + +F+ +   L+ +G  
Sbjct: 122 VIEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFEKFYQELKNLNFIPAGRVLYGAGAD 181

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGD 471
           G + +L         V QGG R+GA    L  WH D+ EF+            L +NT D
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRILRFLLENTND 301

Query: 472 DRRRTHDMN--------------TANWIPDL-------FMKRVTQNAGWTL-----FSPD 505
           D  + +                     I          F  ++ Q+A   L     +S  
Sbjct: 302 DTIKKYAKEKLKFTPFTEQEIAMYQGIINYKSIPGYGGFSDKIIQDAEEKLATGGTYSVH 361

Query: 506 EVSDLHDLY-----GKEFEIAYEN-------------YERQADRGEIKVFRKISAVALWR 547
               L          KEF  A EN             Y+    +   + + K+  V  W 
Sbjct: 362 NSEFLTGANISVCLTKEFMDAVENDAEYELRFPDVESYDADTMKTYNEEWHKVGDVREWG 421

Query: 548 K-------------------MLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
           K                   +      +  P I F D  N  +  Q  G  V ++N C E
Sbjct: 422 KLGYKVRVHRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGE 481

Query: 588 ITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL ++NL  +A   N   +++KL  T+   VR+ DNVID   + +E+
Sbjct: 482 QPLAP----YSVCNLAAVNLAEMADKENKTVNFEKLKRTVEVGVRMQDNVIDATPYFLEE 537

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            KK     R +GLG+MG    L      Y S E   + D+  E I+  A  ASVELA+E+
Sbjct: 538 NKKQALGERRVGLGVMGLHDLLIYCETEYGSEEGNVLIDKVFETIAATAYRASVELAEEK 597

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++    G   ++          L +   E    +        +++ +   G+RNS+ + 
Sbjct: 598 GSFPFLTGENAEE-------TNRLRKAFTETGFMQKMPED---IRESILQSGIRNSHLLT 647

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P +   Y +S   G F  V + +V E   R            
Sbjct: 648 VAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDR------------ 695

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                  N +  P++L +    A ++ P    +     Q+WID + S  +   +  S ++
Sbjct: 696 -------NPDADPNNLPEWFVAAMDLAPEAHADVQCVIQRWIDSSISKTVNAPKGYSVEQ 748

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSV---------EKSTLKGVDGKLNAVPVTDPNS 933
           ++ +Y + +  G K  T Y   SR +  +         E +     +     V + D  S
Sbjct: 749 VEQVYERLYRGGAKGGTVYVDGSRDSQVLTLKAEENSFEDTDTVKKEKSKQHVVLVDTIS 808

Query: 934 STHSLGIPSSCTSDTECEVC 953
              S  +         C VC
Sbjct: 809 DLRSTDVTIGSEVGNTCPVC 828


>gi|187926579|ref|YP_001892924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|241666090|ref|YP_002984449.1| ribonucleotide reductase-like protein [Ralstonia pickettii 12D]
 gi|187728333|gb|ACD29497.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|240868117|gb|ACS65777.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12D]
          Length = 605

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 134/647 (20%), Positives = 223/647 (34%), Gaps = 77/647 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMC 353
           L   +L DRY               F RVA  LA  E   ++      FY  L       
Sbjct: 15  LSTAVLADRYLAPGET----TCNDVFKRVAHALAAAEQPDQRAHFTRLFYANLLQGAIGA 70

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPD------DLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                      H  + +CF+  +        D   +  AL       +  GG+G D++ +
Sbjct: 71  GRIMANAGSANHGTMVNCFVHPIGASEQSVADASDVERALHAAQRTLQMGGGVGYDFSVI 130

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
               A    +N  +  V   L   +           R GA  A L   H D+  F+  ++
Sbjct: 131 APADAEQATSNSGTGSVCAVLDSFDRVCATQALVNTRGGAQMAVLRCDHPDLATFITAKR 190

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
                RRR    N +  + D FM+ V  +  W L      +      G            
Sbjct: 191 G----RRRWATFNLSVAVTDAFMRAVADDGLWCLQHRAVPNAQRLATGAH---------- 236

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A       +  + A  LW  +      +  P + F D  N  +    +  + ++N C E
Sbjct: 237 -ALSNGKWCYAVVPARQLWNMIAEAAHHSAEPGLLFIDTINAANDLAEIETIAATNPCGE 295

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
             L         C LG I++               FD+  L+  +R  VR+LDN I+I  
Sbjct: 296 QPLPPWGS----CVLGPIDVSRWVQWPFGMGGQPLFDFVGLSRAVRVQVRMLDNAIEITR 351

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +        R IG+G+ G   AL ++ +PY +P A   A +    +   A +AS  
Sbjct: 352 WPLPEHMHEAQAKRRIGVGVTGLADALTMMCLPYDAPAARCFAAQIGRCLRDSAYAASAA 411

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG Y  F                  +  R     + ++ LP   + + V   G+RN
Sbjct: 412 LACERGPYPLF------------------SPERSLAPGHFSAALP-KAVCEAVAKHGLRN 452

Query: 761 SNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           S+ +++APT +++   G   S  I+P++  +Y +             L     +      
Sbjct: 453 SHLLSLAPTGSVSLAFGDNCSSGIEPAFDWVYQRRVR---IQHRAPQLYRTENRAYRLFR 509

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYL 877
           A+        G                 TA +ID +  +   +  Q ++D + S   L  
Sbjct: 510 ALYGQRAALPG--------------YFVTARQIDGLDHLRMVATLQPFVDASISKTVLLP 555

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
              S  ++  +   AW + LK     R  +      S L  ++G+L 
Sbjct: 556 CSASCAQVAALLFHAWQLRLKGITIFRPDTGPDDVLSELPPLNGRLT 602


>gi|299139759|ref|ZP_07032932.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
 gi|298598383|gb|EFI54548.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
          Length = 1087

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 120/626 (19%), Positives = 220/626 (35%), Gaps = 70/626 (11%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +RG    +    G +
Sbjct: 184 GYTRPQCSACFINSVNDSLDSILTLAKTEGMLFKWGSGAGSNLSAIRGSMETLS-GGGTA 242

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G + F++  +  A  +  GGK R+ A    L   H DVE+F+  +              
Sbjct: 243 SGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDVEDFIQCKVKEERKAWSLMQAG 302

Query: 481 T--ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
              +    + F     QNA  ++   DE     +  G       ++          +  +
Sbjct: 303 YDGSGPDSEAFTSIFFQNANNSVRVTDEFMQAVENDGMFTTRTVKD---------KQPVK 353

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           +I A  L  ++    ++ G P + +    N     ++   +++SN C+E        + +
Sbjct: 354 EIRARDLMHQIAEATWQCGDPGMQYDTTINRWHTSKNTARINASNPCSEYMFL----DDS 409

Query: 599 VCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            CNL S NLL       QFD       +      ++ ++D   +  E+  K++H +R +G
Sbjct: 410 ACNLASFNLLKFLTPGGQFDIPSYRHAVAVLTTAMEIIVDAAGYPTEQIAKNSHDYRPLG 469

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG----------- 706
           LG     + L    +PY S      A      +   A + S  +A +             
Sbjct: 470 LGYANLGALLMDRGLPYDSDAGRAYAATLTAILCGDAYAQSARIAGDCPPLGAATPLTQQ 529

Query: 707 ------AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-----------------MNRTSR 743
                 A   F    +      +D I +     + +                  +   S+
Sbjct: 530 TGVQGGACPGF----YVNREPFLDVIRMHRAEVNNIDKSLKSSKEPFVAPQLEELKAASQ 585

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             WD      +  G RNS    +APT TI  +    +  I+P    +  K  + G    +
Sbjct: 586 NAWDTALALGEKHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKI 645

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF-------EID 852
            +  V     +  + E+ +  +  +    G+I     +  +   +   +F        I 
Sbjct: 646 VNNTVPGALFKLGYKESEVEGIVNYIDATGTIEGAPSLKPEHLAVFDCSFKPAKGTRTIA 705

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               ++  S  Q ++  A S  + L    S   +   Y +AW +GLK    Y   S+   
Sbjct: 706 WTGHVKMMSATQPFLSGAISKTVNLPNDCSVDDIAEAYTEAWRLGLKAVAIYRDNSKGTQ 765

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSST 935
            +  +     D K  +V  T  N   
Sbjct: 766 PLNVAAQTDADKKGTSVDSTKVNEEV 791


>gi|293556604|ref|ZP_06675171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
 gi|291601222|gb|EFF31507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
          Length = 827

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 156/724 (21%), Positives = 271/724 (37%), Gaps = 121/724 (16%)

Query: 312 SRIEMP-QAFFMRVAMGLALKETEKEKRA-VEFYNLLSSFHFMCSTPTLFNSGTRH--PQ 367
             +E+  +    RVA G++  E EK+ +   EFY  L+  + + +   L+ +GT      
Sbjct: 118 KPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTY 177

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG------------------ 409
            +   +  + D   G+    QE   +    GG+G + + +R                   
Sbjct: 178 FNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSW 237

Query: 410 -----------------LGAHIHGTNGKSQGVIPFL-------KVANDTAVAVNQGGKRK 445
                             GA +   N     +  F+        +  +          R+
Sbjct: 238 LNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQ 297

Query: 446 GA---------------VCAYLETWHI--DVEE-FLDLRKN--------TGDDRRRTHDM 479
            A                  YL   H   D+E+ FL   +         +  D       
Sbjct: 298 LASEKLTFEPLIANEKEWLEYL-VDHPTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGA 356

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           N +  +   FM+ V  +  + L  P     + S++ D Y + +    +  E      ++K
Sbjct: 357 NISVCLTKEFMEAVETDQTYELRFPAIEDYDASEMAD-YDQHWMEIGDVREWAETGRKVK 415

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS 594
           + + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L    
Sbjct: 416 IHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLTP-- 473

Query: 595 EETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              AVCNL +INL           D++KLA  +R +VR  DNVID   +  EK ++    
Sbjct: 474 --YAVCNLAAINLANMVDKKTKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQQAKG 531

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++    
Sbjct: 532 ERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP--- 588

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                       ++     +R     +   +   + +++ +   G+RNS+ + +APT + 
Sbjct: 589 -------FLVGKTVEETTALRQRFIESGYMKKMPESIRQAILKYGIRNSHLLTVAPTGST 641

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  VNS +V+E  ++                   
Sbjct: 642 GTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNSEIVSEYLEK------------------- 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQ 891
           N E   D+L     +A E+ P   +      Q+W+D + S  +   +    K++  IY  
Sbjct: 683 NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVDSSISKTVNAPKGYQVKQVAAIYED 742

Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            +  G K  T Y   SR +  +   TL+  D      PV    ++  +L    S  ++  
Sbjct: 743 LYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESSEAEEI 798

Query: 950 CEVC 953
           C +C
Sbjct: 799 CPIC 802


>gi|83642897|ref|YP_438185.1| ORF61 [Ovine herpesvirus 2]
 gi|61971011|gb|AAX58096.1| ORF61 [Ovine herpesvirus 2]
          Length = 785

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 158/721 (21%), Positives = 276/721 (38%), Gaps = 95/721 (13%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVA-----MGLA-------LKETEKEKR---- 338
           L  +  YD Y L   + +  E     FMRVA       LA       +  T   +     
Sbjct: 98  LSAKRFYDTYVLKTADDAWYESVTHCFMRVAAFCTVRALANKPLKTTIIYTNYLRLGRGM 157

Query: 339 --------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA--LQ 388
                    + F++ L+     C+TP + ++GTRH  L+SCFL +             LQ
Sbjct: 158 ECFPTVDIFMYFFSPLAQQLVCCATPIMRSAGTRHANLASCFLMSPDLSSEANTTTALLQ 217

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L     G+G D T     G  +             L + +      N    R  +V
Sbjct: 218 ELTSLLSVKSGVGCDVTSFGHGGKSVQ----------SCLSLIDAQVEYFNDQNPRPVSV 267

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTLFSPDE 506
            AY+E WH  ++EFL ++    ++  R   +     IP LF  +     N  W LFSP++
Sbjct: 268 AAYMEVWHSQIQEFLSVKLP--ENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPED 325

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L  LYG+EF+   E YER     E +   ++   +L   ++  + +TG P+I +KD 
Sbjct: 326 AGNLPHLYGEEFK---EEYERLV--RERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDA 380

Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--------------- 610
           CN    ++  G  + S+NLC E+      +  + CNL ++ L                  
Sbjct: 381 CNAHHWKEMRGQAIASANLCAEVIQYPGRD-VSTCNLANVCLPMCLISTPVDPRAPSGQN 439

Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                      +N  F    L   +  AV +++  ID      E  ++     R++G+G+
Sbjct: 440 YSGEVVKSEAVSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRG-QRERSMGIGV 498

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQ 718
            G       +   Y  P A  +  +  E + + A+  S  + +  G   +  ++ S   +
Sbjct: 499 HGLADVFAEMGYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSR 558

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           GVF  +         D + ++      W  L +     G+ NS  +A+ PT   + + G 
Sbjct: 559 GVFHWEGW-------DGVKLSIPEHE-WSSLARSCVHSGVYNSQFVALMPTVGSSLLTGY 610

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++S  P + N+  K +   +    N      + + DL        ++ + G +  +    
Sbjct: 611 AESYYPFFANVSSKVSSKEEIMKPNVTFWKRVSEEDLHT------VRVYGGDVALLPSPL 664

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLM 895
            +   +  +AF+      +  A  R  ++DQ+QS + YL E    S K L  +    +  
Sbjct: 665 REKYSLFLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAH 724

Query: 896 GLKT-TYYLRSRSATSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           GLKT  YY + +  +++     L+  +G      VT             +      C  C
Sbjct: 725 GLKTIMYYCKVKKQSTMSSFQCLREQEGDKANDTVTGEEPLPDIKYGACNLEGTEACLHC 784

Query: 954 Q 954
           Q
Sbjct: 785 Q 785


>gi|163939260|ref|YP_001644144.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|229010749|ref|ZP_04167946.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132250|ref|ZP_04261106.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|163861457|gb|ABY42516.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228651188|gb|EEL07167.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750423|gb|EEM00252.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 462

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 212/492 (43%), Gaps = 57/492 (11%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +
Sbjct: 1   MQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHV 60

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F+P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++
Sbjct: 61  FAPYTVFKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYL 120

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLA 609
            FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++ 
Sbjct: 121 MFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNIVN 180

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALH 668
              N +     +   +   +  L  V D+         KK+N    ++GLG M     L 
Sbjct: 181 VMENKE-----IREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLA 235

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP----- 722
              I Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +      
Sbjct: 236 KNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYET 295

Query: 723 IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D   +  +++     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S
Sbjct: 296 TDYSPVTEKIQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSS 355

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  ++  +        +L  +      W                         
Sbjct: 356 VMPIVSQIESRTYANATTYYPMPYLSKD----TFW------------------------- 386

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
              + ++++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ 
Sbjct: 387 --YYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSL 444

Query: 901 YYLRSRSATSVE 912
           YY R+R  +  E
Sbjct: 445 YYTRTRKLSVEE 456


>gi|218288525|ref|ZP_03492802.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241182|gb|EED08357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 1065

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 127/637 (19%), Positives = 217/637 (34%), Gaps = 120/637 (18%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
             F  +  D    I   L +     +    +    + +R   +++ G NG+S G   +  
Sbjct: 307 VGFCLSPGDSRSTIARTLGDMWEAMRDGKRVSLVLSSLRPRYSYVRGVNGRSSGAYSWGL 366

Query: 430 VANDT--------------------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           + +                           QGG R+GA+   L   H D+ +F+  ++  
Sbjct: 367 LYDKGNQVFGEGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHADLPKFIRAKQVD 426

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQ 528
           G         N +  + + FM+   +   W L F P       + +  +F    E     
Sbjct: 427 GV----ITGANISVGVSEEFMQAKRRGESWQLGFVP---PSHREAFDGDFGRWLEE---- 475

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +V   ISA  LWR +    +++  P + F    N  S   +   + ++N C E 
Sbjct: 476 --GKPFEVTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVATNPCGEQ 533

Query: 589 TLNSSSEETAVCNLGSINLLAH------------------------------------FA 612
            L        +CNLG++ L                                       F 
Sbjct: 534 PLPP----YGICNLGAVVLARFANGFRDSGVRTEFSDPKREAYVRSRLLEKFPADEAEFL 589

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            +   +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG    +    I
Sbjct: 590 LHHIRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLHDLMLYCGI 649

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S E+V++ D  M  ++  A   SVELA+E G +  F    + Q  F          V
Sbjct: 650 RYGSEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKFLQSGFMRHMAAERPHV 709

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                             + ++  G+RN   M IAPT T   + G S   +P Y   Y +
Sbjct: 710 V-----------------EAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFR 752

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G        L  E         A++   +    S        + L     TA E+ 
Sbjct: 753 NSRLG--------LFEEHA-------AIVEQYRREHPS-------EESLPPYFVTAMELT 790

Query: 853 PMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P   +   +  Q+WID + S      +  + +    +Y  A+ +G K     R  S +  
Sbjct: 791 PEEHVRVQAALQRWIDSSISKTCNAPNSYTVEDTVKLYDLAYELGCKGITIYRDGSRSEQ 850

Query: 912 EKSTLK------GVDGKLNAVPVTDPNSSTHSLGIPS 942
             S  K      G   K  A       S+  +   P 
Sbjct: 851 VLSLKKDDQAGDGEGAKDTAASAPVEKSAQPAQAAPG 887



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 39/239 (16%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT 374
            P+  + RVA G A    + E     FY L   + ++       + GT       +CF+ 
Sbjct: 97  SPRQMWRRVARGAAAVTRQPEVWEEAFYELQKGWRYVPGGRINASLGTGMQVTSYNCFVI 156

Query: 375 T-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V  DL     +  +   +   SGG+G + + +   G  I                   
Sbjct: 157 PNVGPDLRDYAESFGQTLEIQARSGGVGMNLSRIPPQGTLIP------------------ 198

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                     RK  +   L+ WH D+ +FL+          R             F + V
Sbjct: 199 -----VSTVSRKAELMLVLDAWHPDLVDFLETEYPHSTKLVRADAA---------FWRAV 244

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            ++  W    PD   + +D   +++    + + RQ    E     +I A  L  K+L  
Sbjct: 245 EEDDEWVFRFPDTSVEGYD---EKWAGDLDAWLRQGLPVEEH--GRIRARELMEKILAS 298


>gi|293572391|ref|ZP_06683372.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
 gi|291607540|gb|EFF36881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
          Length = 827

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 156/724 (21%), Positives = 271/724 (37%), Gaps = 121/724 (16%)

Query: 312 SRIEMP-QAFFMRVAMGLALKETEKEKRA-VEFYNLLSSFHFMCSTPTLFNSGTRH--PQ 367
             +E+  +    RVA G++  E EK+ +   EFY  L+  + + +   L+ +GT      
Sbjct: 118 KPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTY 177

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG------------------ 409
            +   +  + D   G+    QE   +    GG+G + + +R                   
Sbjct: 178 FNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSW 237

Query: 410 -----------------LGAHIHGTNGKSQGVIPFL-------KVANDTAVAVNQGGKRK 445
                             GA +   N     +  F+        +  +          R+
Sbjct: 238 LNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQ 297

Query: 446 GA---------------VCAYLETWHI--DVEE-FLDLRKN--------TGDDRRRTHDM 479
            A                  YL   H   D+E+ FL   +         +  D       
Sbjct: 298 LASEKLTFEPLIANEKEWLEYL-VDHPTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGA 356

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           N +  +   FM+ V  +  + L  P     + S++ D Y + +    +  E      ++K
Sbjct: 357 NISVCLTKEFMEAVETDQTYELRFPAIEDYDASEMAD-YDQHWMEIGDVREWAETGRKVK 415

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS 594
           + + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L    
Sbjct: 416 IHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLTP-- 473

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              AVCNL +INL           D++KLA  +R +VR  DNVID   +  EK ++    
Sbjct: 474 --YAVCNLAAINLANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQQAKG 531

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++    
Sbjct: 532 ERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP--- 588

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                       ++     +R     +   +   + +++ +   G+RNS+ + +APT + 
Sbjct: 589 -------FLVGKTVEETTALRQRFIESGYMKKMPESIRQAILKYGIRNSHLLTVAPTGST 641

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  VN+ +V+E  ++                   
Sbjct: 642 GTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK------------------- 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           N E   D+L     +A E+ P   +      Q+W+D + S  +    E   K++  IY  
Sbjct: 683 NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVDSSISKTVNAPKEYQVKQVAAIYED 742

Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            +  G K  T Y   SR +  +   TL+  D      PV    ++  +L    S  ++  
Sbjct: 743 LYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVVNNQITLDSLESSEAEEI 798

Query: 950 CEVC 953
           C +C
Sbjct: 799 CPIC 802


>gi|229166286|ref|ZP_04294045.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617231|gb|EEK74297.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 462

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 208/492 (42%), Gaps = 57/492 (11%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +
Sbjct: 1   MQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHV 60

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F+P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++
Sbjct: 61  FAPYTVFKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYL 120

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLA 609
            FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++ 
Sbjct: 121 MFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNIVN 180

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALH 668
              N +     +   +   +  L  V D+         KK+N    ++GLG M     L 
Sbjct: 181 VMENKE-----IREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLA 235

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
              I Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +      
Sbjct: 236 KNKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYET 295

Query: 728 LLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                  E        ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S
Sbjct: 296 TDYSPVTETVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSS 355

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  ++  +        +L  +      W                         
Sbjct: 356 VMPIVSQIESRTYANATTYYPMPYLSKD----TFW------------------------- 386

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
              + ++++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ 
Sbjct: 387 --YYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSL 444

Query: 901 YYLRSRSATSVE 912
           YY R+R  +  E
Sbjct: 445 YYTRTRKLSVEE 456


>gi|258511853|ref|YP_003185287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478579|gb|ACV58898.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 1065

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 125/632 (19%), Positives = 215/632 (34%), Gaps = 115/632 (18%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
             F  +  D    I   L +     +    +    + +R   +++ G NG+S G   +  
Sbjct: 307 VGFCLSPGDSRSTIARTLGDMWEAMRDGKRVSLVLSSLRPRYSYVRGVNGRSSGAYSWGL 366

Query: 430 VANDT--------------------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           + +                           QGG R+GA+   L   H D+ +F+  ++  
Sbjct: 367 LYDKGNQVFGEGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHADLPKFIRAKQVD 426

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL-FSPDEVSDLHDLYGKEFEIAYENYERQ 528
           G         N +  + + FM+   +   W L F P       + +  +F    E     
Sbjct: 427 GV----ITGANISVGVSEEFMQAKRRGESWQLGFVP---PSHREAFDGDFGRWLEE---- 475

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +V   ISA  LWR +    +++  P + F    N  S   +   + ++N C E 
Sbjct: 476 --GKPFEVTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVATNPCGEQ 533

Query: 589 TLNSSSEETAVCNLGSINLLAH------------------------------------FA 612
            L        +CNLG++ L                                       F 
Sbjct: 534 PLPP----YGICNLGAVVLARFANGFRDSGVRTEFSDPEREAYVRSLLLEKFPADEAEFL 589

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            +   +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG    +    I
Sbjct: 590 LHHIRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLHDLMLYCGI 649

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S E+V++ D  M  ++  A   SVELA+E G +  F    + Q  F          V
Sbjct: 650 RYGSEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKFLQSGFMRHMAAERPHV 709

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                             + ++  G+RN   M IAPT T   + G S   +P Y   Y +
Sbjct: 710 V-----------------EAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFR 752

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G        L  E         A++   +    S        + L     TA E+ 
Sbjct: 753 NSRLG--------LFEEHA-------AIVEQYRREHPS-------EESLPPYFVTAMELT 790

Query: 853 PMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P   +   +  Q+WID + S         + +    +Y  A+ +G K     R  S +  
Sbjct: 791 PEEHVRVQAALQRWIDSSISKTCNAPHSYTVEDTVKLYDLAYELGCKGITIYRDGSRSEQ 850

Query: 912 EKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPS 942
             S  K    G       T  ++       P+
Sbjct: 851 VLSLKKDDQAGDGEGAKDTAASAPVEKSAQPA 882



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 39/239 (16%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT 374
            P+  + RVA G A    + E     FY L   + ++       + GT       +CF+ 
Sbjct: 97  SPRQMWRRVARGAAAVTRQPEVWEEAFYELQKGWRYVPGGRINASLGTGMQVTSYNCFVI 156

Query: 375 T-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V  DL     +  +   +   SGG+G + + +   G  I                   
Sbjct: 157 PNVGPDLRDYAESFGQTLEIQARSGGVGMNLSRIPPQGTLIP------------------ 198

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                     RK  +   L+ WH D+ +FL+          R             F + V
Sbjct: 199 -----VSTASRKAELMLVLDAWHPDLVDFLETEYPHSTKLVRADAA---------FWRAV 244

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            ++  W    PD   + +D   +++    + + RQ    E     +I A  L  K+L  
Sbjct: 245 EEDDEWVFRFPDTSVEGYD---EKWAGDLDAWLRQGLPVEEH--GRIRARELMEKILAS 298


>gi|227550161|ref|ZP_03980210.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257897485|ref|ZP_05677138.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
 gi|227180728|gb|EEI61700.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257834050|gb|EEV60471.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
          Length = 827

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 153/723 (21%), Positives = 269/723 (37%), Gaps = 119/723 (16%)

Query: 312 SRIEMP-QAFFMRVAMGLALKETEKEKRA-VEFYNLLSSFHFMCSTPTLFNSGTRH--PQ 367
             +E+  +    RVA G++  E EK+ +   EFY  L+  + + +   L+ +GT      
Sbjct: 118 KPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTY 177

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG------------------ 409
            +   +  + D   G+    QE   +    GG+G + + +R                   
Sbjct: 178 FNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSW 237

Query: 410 -----------------LGAHIHGTNGKSQGVIPFL-------KVANDTAVAVNQGGKRK 445
                             GA +   N     +  F+        +  +          R+
Sbjct: 238 LNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFIISKIQNPAILQNLIHTSQSPTVRQ 297

Query: 446 GAVC-AYLE-------------TWHI--DVEE-FLDLRKN--------TGDDRRRTHDMN 480
            A      E               H   D+E+ FL   +         +  D       N
Sbjct: 298 LASEKLTFEPLTANEKEWLEFLVDHPTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGAN 357

Query: 481 TANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            +  +   FM+ V  +  + L  P     + S++ D Y + +    +  E      ++K+
Sbjct: 358 ISVCLTKEFMEAVETDQTYELRFPAIEDYDASEMAD-YDQHWMEIGDVREWAETGRKVKI 416

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSE 595
            + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L     
Sbjct: 417 HQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLTP--- 473

Query: 596 ETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             AVCNL +INL           D++KL   +R +VR  DNVID   +  +K ++     
Sbjct: 474 -YAVCNLAAINLANMVDKKTKVVDFEKLTDVVRASVRFQDNVIDATPYFFKKNEQQAKGE 532

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++     
Sbjct: 533 RRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP---- 588

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                      ++     +R     +   +   + +++ +   G+RNS+ + +APT +  
Sbjct: 589 ------FLVGKTVEETTALRQRFIESGYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTG 642

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GVS  ++P +   Y +S   G F  VN+ +V+E  ++                   N
Sbjct: 643 TMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK-------------------N 683

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQA 892
            E+  D+L     TA E+ P   +      Q+W+D + S  +   +    K++  IY   
Sbjct: 684 PEKTADNLPPFFVTAMELSPKDHVSVQCTIQRWVDSSISKTVNAPKGYQVKQVAAIYEDL 743

Query: 893 WLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           +  G K  T Y   SR +  +   TL+  D      PV     +  +L    S  ++  C
Sbjct: 744 YQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLESSEAEEIC 799

Query: 951 EVC 953
            +C
Sbjct: 800 PIC 802


>gi|322372257|ref|ZP_08046798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
 gi|320548266|gb|EFW89939.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
          Length = 1028

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 141/658 (21%), Positives = 251/658 (38%), Gaps = 103/658 (15%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF +L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+
Sbjct: 148 EFGDLMEGLSFIPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAEVFQSGGGM 207

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV 
Sbjct: 208 GYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVI 267

Query: 461 EFLDLRKNTG------------------------------DDRRR------------THD 478
           +F+  +                                  DD  R              +
Sbjct: 268 QFIHAKNKDVSLANTLRLNDPDDYTHTSFKEALEEARELIDDDGRVPKHLRNAAEGHLSN 327

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ +  +  +   +P       +      E   E Y+       +    
Sbjct: 328 FNISVGVTDDFMEALYNDEEFVFTNPRT-----EEPHVATEHTKEMYDMFGLGDYVTPGE 382

Query: 539 --KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
              I A  LW +++   +E G P I + +  N +             L T        EE
Sbjct: 383 VLSIPAKVLWDRIVEGAWENGEPGIIYLERVNKQHSFDVEKHPDHRILATNPCGEQPLEE 442

Query: 597 TAVCNLGSINL----------------------------LAHFANNQFDYDKLASTIRTA 628
              CNLG INL                            +  F     D+++    I   
Sbjct: 443 YEACNLGHINLSTLADLDAPDWRVWYDENGDNYGSLSEAVDAFLREGIDWEEFDHRIEYG 502

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EIA + M 
Sbjct: 503 TRFLENVVTMSDFPVEKIEQKVRDMRKIGLGIMGLAQLYIQLGVRYGSEEGNEIAKQLMT 562

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I+  +  AS ELA+ERG+++ ++ S +     P +      +          + L  ++
Sbjct: 563 HINHESKWASHELAEERGSFNDWEDSKYAN---PTEYAEWFEK---------QTGLDAEK 610

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVV--N 803
            K       +RN N   IAPT T + +   +   +P Y   Y K+      GD  +V  +
Sbjct: 611 WKDGFA---VRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFD 667

Query: 804 SFLVNELKQRDLWDEAMISD----LKYHDGS-IGNIERIPDDLKKIHATAFEIDPMWLIE 858
            + +  L+  D+  +A+  +    +  ++ S +  +E +PD + ++     ++       
Sbjct: 668 DYFLRTLEANDIDVDAVKEEAQTQMANNEFSGVEGLETVPDAIGELFVVTGDLTGKQHAA 727

Query: 859 SASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
                Q+ +D A S    + +  S + +D +YR  +  G K     R  + +    +T
Sbjct: 728 VQCSCQQGVDSAISKTCNFPNSASKEDMDEVYRYIYDHGGKGVTVYRDGTRSKQVLTT 785


>gi|300710136|ref|YP_003735950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
 gi|299123819|gb|ADJ14158.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
          Length = 1031

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 145/664 (21%), Positives = 247/664 (37%), Gaps = 105/664 (15%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E +A EF  L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EAKADEFQALMERLSFIPNSPTLMNAGDELQQLSACFVDSPGDDISDIHQTAKEAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWRLRPYGDSVGSTGGIASGPITFMRTFDQMCETIAQGGTRRGAQMGVMRVS 261

Query: 456 HIDVEEFLDLRKNTG------------------------------DDRRR---------- 475
           H DV EF+  +                                  D+  R          
Sbjct: 262 HPDVIEFIHAKNKDVSLAHTLRLNDPDDYTYTSFSEALEEARGLIDEDGRVPKHLRNAVE 321

Query: 476 --THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  + D FM+ +  +  +   +P       +          E Y R      
Sbjct: 322 GHLSNFNISVGVTDGFMEALYNDEEFVFENPRT-----EEPHIATAETKEMYSRYGLGHH 376

Query: 534 IKVFRK--ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           ++V  +  I A ALW +++   +E G P + + +  N               L T     
Sbjct: 377 VEVGEELAIPAEALWDRIVDGAYENGEPGVIYLERVNKEHSFDVEAHPDHRILATNPCGE 436

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDY-------------------DKLASTIRTA---- 628
              EE   CNLG INL    A +  D+                   D L   I TA    
Sbjct: 437 QPLEEYEACNLGHINLSTLAATDAPDWRIWHTEHGAEYDSLEAAMADYLEEAIDTAEFDR 496

Query: 629 -----VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                 R L+NV+ ++   + + ++     R IGLG+MG       L + Y S E  E+A
Sbjct: 497 RIELGTRFLENVVTMSDFPVPEIEQKVREMRKIGLGIMGLAQLYIQLGVRYGSEEGNEMA 556

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            + M  I+  +  AS ELA ERG++  +  S +     P +          E A      
Sbjct: 557 SQLMTHINHGSKRASHELAGERGSFEDWSDSKYAN---PTEYAEWFEHHTGESA------ 607

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFT 800
             W E         +RN N   IAPT T + +   +   +P Y   Y K+      G+  
Sbjct: 608 DDWAE------GYPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGEEM 661

Query: 801 VV--NSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFEID 852
           +V  + + +  L+  D+  EA+ ++ +        DG +  +  +P+ + ++     ++ 
Sbjct: 662 LVEFDDYFLRTLEANDVDVEAVKAEAQEQMSENEFDG-VEGLSTVPNAIGELFVVTSDLA 720

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
                      Q  +D A S         S + ++ +YR  +  G K     R  + +  
Sbjct: 721 GKDHAAVQCACQTGVDSAISKTCNFPNAASKEDMEEVYRYIYDNGGKGVTVYRDGTRSKQ 780

Query: 912 EKST 915
             +T
Sbjct: 781 VLTT 784


>gi|78127896|gb|ABB22280.1| ribonucleotide-reductase large subunit-like protein [Ovine
           herpesvirus 2]
          Length = 785

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 159/721 (22%), Positives = 278/721 (38%), Gaps = 95/721 (13%)

Query: 296 LGLQILYDRYFLHI-NGSRIEMPQAFFMRVA-----MGLA-------LKETEKEKR---- 338
           L  +  YD Y L   + +  E     FMRVA       LA       +  T   +     
Sbjct: 98  LSAKRFYDTYVLKTADDAWYESVTHCFMRVAAFCTVRALANKPLKTTIIYTNYLRLGRGM 157

Query: 339 --------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQ 388
                    + F++ L+     C+TP + ++GTRH  L+SCFL +     +       LQ
Sbjct: 158 ECFPTVDIFMYFFSPLAQQLVCCATPIMRSAGTRHANLASCFLMSPDLSSEANTTAALLQ 217

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L     G+G D T     G  +             L + +      N    R  +V
Sbjct: 218 ELTSLLSVKSGVGCDVTSFGHGGKSVQ----------SCLSLIDAQVEYFNDQNPRPVSV 267

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTLFSPDE 506
            AY+E WH  ++EFL ++    ++  R   +     IP LF  +     N  W LFSP++
Sbjct: 268 AAYMEVWHSQIQEFLSVKLP--ENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPED 325

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L  LYG+EF+   E YER     E +   ++   +L   ++  + +TG P+I +KD 
Sbjct: 326 AGNLPHLYGEEFK---EEYERLV--RERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDA 380

Query: 567 CNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--------------- 610
           CN R  ++  G  + S+NLC E+      +  + CNL ++ L                  
Sbjct: 381 CNARHWKEMRGQAIASANLCAEVIQYPGRD-VSTCNLANVCLPMCLISTPVDPRAPSGQN 439

Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                      +N  F    L   +  AV +++  ID      E  ++     R++G+G+
Sbjct: 440 YSGEVVKSEAVSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRG-QRERSMGIGV 498

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQ 718
            G       +   Y  P A  +  +  E + + A+  S  + +  G   +  ++ S   +
Sbjct: 499 HGLADVFAEMGYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSR 558

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           GVF  +         D + ++      W  L +     G+ NS  +A+ PT   + + G 
Sbjct: 559 GVFHWEGW-------DGVKLSIPEHE-WSSLARSCVHSGVYNSQFVALMPTVGSSLLTGY 610

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++S  P + N+  K +   +    N      + + DL        ++ + G +  +    
Sbjct: 611 AESYYPFFANVSSKVSSKEEIMKPNVTFWKRVSEEDLHT------VRVYGGDVALLPSPL 664

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLM 895
            +   +  +AF+      +  A  R  ++DQ+QS + YL E    S K L  +    +  
Sbjct: 665 REKYSLFLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAH 724

Query: 896 GLKT-TYYLRSRSATSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           GLKT  YY + +  +++     L+  +G      VT             +      C  C
Sbjct: 725 GLKTIMYYCKVKKQSTMSSFQCLREQEGDKANDTVTGEEPLPDIKYGACNLEGTEACLHC 784

Query: 954 Q 954
           Q
Sbjct: 785 Q 785


>gi|83816105|ref|YP_444446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
 gi|83757499|gb|ABC45612.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
          Length = 894

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/698 (20%), Positives = 254/698 (36%), Gaps = 106/698 (15%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSS-------FHFMCSTPTLFNSGTRHP--QLS 369
             + R A  +A  E + +     FY LLS        F F        N+GT      L 
Sbjct: 71  DTWYRNARAMAQVEDDTDMWTQRFYQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLI 130

Query: 370 SCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           +CF++       D +  I   L   A +    GG G     +R  GA I G    + G +
Sbjct: 131 NCFVSGFQGHDQDSMDEIQAELTRQAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAV 190

Query: 426 PFLKVANDTAVAVN------------QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
             L V N  A  +             +   RKGA    +  WH D+ EF++ ++  G   
Sbjct: 191 QMLDVWNKQAATIVAGSGMKSDRDDVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG--- 247

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R H  N +  I D FM+ V  +  W L  PD   +  + Y + ++   + Y+ +    +
Sbjct: 248 -RLHKFNMSVLITDEFMEAVKNDDTWALRFPD-YENEKEFYKQHWDGNLKAYQEKGGTVK 305

Query: 534 IKV------FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                         A  +W +++   +    P + F D  N  +   +V  ++++N C E
Sbjct: 306 TWTDPATGEPAVYEAREIWNRIMDSTYNRNEPGVIFVDTINKENNLGYVEHINATNPCGE 365

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L        VC LG++N+           DYD +   +  AVR LDNV D++   +E+
Sbjct: 366 QVLPVG----GVCLLGNLNVTQLVDREAGTIDYDLVDDLVPLAVRFLDNVNDLSYVPLEE 421

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +++    R IGLG  G  SAL ++   Y S E   +  E  E ++  A  AS  LA+E+
Sbjct: 422 QQRNLQEKRRIGLGHYGDGSALMMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEK 481

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F    +    F         E+  +L                    G+RNS+ ++
Sbjct: 482 GAFPLFDKDEYLSSPFVQRLSDKTKEMIGDL--------------------GLRNSHLLS 521

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSN--------MSGDFTVVNSFLV--NELKQRD 814
           I PT   + +    S  I+P + + Y++++        ++      N++ V  +      
Sbjct: 522 IQPTGNTSTLGNAPSSGIEPVFMHSYIRTSEQPALPDGINRPPMSPNAYEVGQDIDADGT 581

Query: 815 LWDEAMISD---LKYHDGSIGNIERIP-------DDLKKI-----------------HAT 847
            W      D   L+  +    + +  P        ++K                     T
Sbjct: 582 AWTAEEQGDETVLRCQEEGHTHWQIHPTRDICKDQEVKDYAVRHMETDGTWDPDADWAVT 641

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMG-LKTTYYLRS 905
             ++D    +        ++D + S  + +      +    +Y++A   G +K     R 
Sbjct: 642 TRDLDVDDHLTQMKALAPFVDSSMSKTVNVPNDYPFEDFKELYKKAHDTGVIKGVTTYR- 700

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                   + L G D   +   V    +      +P +
Sbjct: 701 ---AGTMSAVLSGEDDGDDDRTVPRTEAPDRPETLPCA 735


>gi|225873206|ref|YP_002754665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793913|gb|ACO34003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
          Length = 1083

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 138/713 (19%), Positives = 250/713 (35%), Gaps = 117/713 (16%)

Query: 304 RYFLHINGSRIEMPQ------AFFMRVAM---------GLALKETEKEKRAVEFYNLLSS 348
           +Y        +  P+          RVA          G    E +      E  +LL +
Sbjct: 85  KYL----HGPLNTPERESGVRQLVSRVAETVRDWGIKGGYFASEEDAAIFHDELAHLLIT 140

Query: 349 FHFMCSTPTLFN----------------------------SGTRHPQLSSCFLTTVPDDL 380
                ++P  FN                            +G R+PQ S+CF+  V D L
Sbjct: 141 QKAAFNSPVWFNVGCDRLEPKSDAQNWHWNPHTCAVEFSVTGYRNPQCSACFINAVDDSL 200

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    +   ML K+  G G + +P+RG    +    G + G + F++  +  A  +  
Sbjct: 201 DSILTLAKTEGMLFKWGSGTGTNLSPIRGSMEQLS-GGGTASGPLSFMRGFDAFAGVIKS 259

Query: 441 GGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT---ANWIPDLFMKRVTQN 496
           GGK R+ A    L   H D+ +F++ +                  +    + +     QN
Sbjct: 260 GGKTRRAAKMVILNVDHPDIVDFIECKMKEEAKAWALMREGYDGSSGPDSEAYSSIFFQN 319

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A  ++   DE     +  G+      ++             +   A  +  K+    ++ 
Sbjct: 320 ANNSVRVNDEFMRAVEKDGEFTTRTVKD---------GAAVKTYKAREIMHKIAEATWQC 370

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQ 615
           G P + +    N     ++ G +++SN C+E     +S     CNL S NLL        
Sbjct: 371 GDPGMQYDSTINRWHTSKNSGRINASNPCSEYMFLDNS----ACNLASFNLLKFMTPAGT 426

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD       I   +  ++ ++D + +  E   +++H +R +GLG     + L  L +PY 
Sbjct: 427 FDIRAYRHAIDVLITAMEILVDNSGYPTENIARNSHDYRPLGLGYANLGALLMALGLPYD 486

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-----------------AYSSFKGSLWDQ 718
           S    + A      +   A   S  +A++                   A   F    +  
Sbjct: 487 SDAGRDFAATLTAIMCGEAYLQSSRIAEKCPPLASATPLTASVERNGGACPGF----YVN 542

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLP----------------WDELKKRVKTIGMRNSN 762
               +D I +     +++  ++TS  P                WD+     +  G RNS 
Sbjct: 543 REPFLDVIRMHRAEVNKIGKSKTSSEPFKVPELDALITASKECWDQALAHGEKYGYRNSQ 602

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI  +    +  I+P    + Y K    G   +VN+ +   L +    +E +
Sbjct: 603 VTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKIVNNTVPAALFKLGYKNEDV 662

Query: 821 ISDLKYHD--GSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQ 871
            + + Y D  G+I     I  +   +   +F+       I  +  I+  +  Q ++  A 
Sbjct: 663 DAIVSYIDATGTIEGAPGIKPEHLAVFDCSFKPAKGTRSIHYLGHIKMMAATQPFLSGAI 722

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDG 921
           S  + +   S    +   Y ++W  GLK    Y   S+ A  +  S  KG   
Sbjct: 723 SKTVNMPHDSNIDDIAEAYLESWRQGLKAVAIYRDGSKGAQPLNVSDGKGAKE 775


>gi|24943147|ref|NP_733909.1| ORF55 [Callitrichine herpesvirus 3]
 gi|13676698|gb|AAK38264.1|AF319782_58 ORF55 [callitrichine herpesvirus 3]
          Length = 802

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 188/854 (22%), Positives = 293/854 (34%), Gaps = 152/854 (17%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +G+    L   L   + +    +P    +  R     L R + + +  K           
Sbjct: 11  EGVRIEQLINDLKVQANS----DPEANILAGRL----LHR-LKSPLTTKTVSDYLLCFGP 61

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           L  E    +I++       H   ++  L        Y+R     YL     YD Y     
Sbjct: 62  LLAENVLLFIQD-------HLDELEDRLSSFQRGEVYDRLLGRGYLSALRYYDTYLNVTT 114

Query: 311 GSRIEMPQAFFMRVAMGLALK--ETEKEKRAVE---------------FYNLLSSFHFMC 353
               E     +MRVA   A      E  + A++               F+  L+     C
Sbjct: 115 DGVYESIPHAYMRVAAFCASITLHFEGMRLAMKAMCPHLSDILSIFDYFFEHLTLQTVCC 174

Query: 354 STPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           STP L ++G R   L+SCF+ +  +  +       +++   L ++  G+G   T     G
Sbjct: 175 STPILRSAGIRKQILASCFIMSPRMESEAAVNLAMMRDLGRLLQHKSGVGMGVTDFGRDG 234

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            HI             LK+ N      N   KR  +V A++E WH  V +FL+ +     
Sbjct: 235 KHIGL----------LLKMVNSHVEYHNYANKRPVSVAAFMEVWHSQVFKFLEAKVPENP 284

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           +  R   + T   IP +F K   +   + W LF P     L  LYG+EFE     Y R  
Sbjct: 285 E--RCAGIFTGLCIPHMFFKLYKEKPWSFWHLFEPQNAGRLESLYGEEFER---EYYRLI 339

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
             G+   +  +   +L   ++    + G P+I  K+ CN    +   G   S+       
Sbjct: 340 KEGKS--YGSVPIKSLMFSIVNSAIKAGSPYILLKEACNEHYWRDLSGEAMSAGNLCAEV 397

Query: 590 LNSSSEETAVCNLGSINLLAHFAN------------------------------------ 613
           L  S +E AVCNL S+ L                                          
Sbjct: 398 LQPSRDEIAVCNLASVCLPRCLTGPLTTGPVHGLMGPERKSGHELLRGLQETYDPIEAVD 457

Query: 614 ---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                F    L   ++ AV +++  I     T E    +     ++G+G+ G       L
Sbjct: 458 LPTGDFSLKILRDAVQCAVFLVNCAIQAGSPTWEARDVA-----SMGIGVQGLADVFSAL 512

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLL 729
              Y  P +  +     E + F A+  S  +A+  R  +S F  S +  G F        
Sbjct: 513 GWHYTDPSSRALNSRIFEEMYFTALCTSNTIAEHSRRMFSGFSRSKYASGWFHWHDWPDT 572

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                   +       W+ L  R+K  G+ NS  +A+ PTA +A + GVS S  P + N 
Sbjct: 573 --------ITSLEPEVWETLAGRIKEHGLFNSQFIALMPTAGVAQLTGVSDSFYPFFANA 624

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG-NIERIPDDLKK---IH 845
             K     +    N      L+           D       +G  +E +P+ L+    I 
Sbjct: 625 STKVTSKEEALRPNQTFWRHLRV----------DHANEAVRVGCKVEAMPEPLRTHYSIF 674

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR---QAWLMGLKT-TY 901
            TAF+     LI  +  R  ++DQ+QSL L+L E    +   + R     W +GLKT  Y
Sbjct: 675 KTAFDYPQEDLIRMSRDRAPFVDQSQSLTLFLKERDASRASMLVRLLLLGWELGLKTIMY 734

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS--------------- 946
           Y R      VEK    GV     A P  +     H       C S               
Sbjct: 735 YCR------VEKEADMGVYECRKADPRAEDEVVEHESDDTEVCKSGVVETKYKYYELFDV 788

Query: 947 ------DTECEVCQ 954
                 +  C  CQ
Sbjct: 789 DTVEDVEPNCMSCQ 802


>gi|149183744|ref|ZP_01862151.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148848544|gb|EDL62787.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 854

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 162/738 (21%), Positives = 275/738 (37%), Gaps = 129/738 (17%)

Query: 312 SRIE-MPQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG--TRH 365
             +E   +    R A GLA  ET +EKR   F   Y+ L + +F+ +   L+ +G  T  
Sbjct: 125 KPLEVYYEQIAKRNATGLASVETTEEKRQEWFEKFYHELVNMNFVPAGRVLYGAGADTDV 184

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 185 TYFNCYVMPFVKDSRDGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 244

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT------HDM 479
            +L         V QGG R+GA    L  WH D+ EF+  +       R          +
Sbjct: 245 SWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRILRYLLENTEDEQI 304

Query: 480 NTANWIPDLFMKRVTQNAGWTL--FSPDEVSDL--------------------HDLYGKE 517
             A      F     Q         +  ++  L                    + ++  E
Sbjct: 305 KKAAKDKLKFTPLTEQEKVMYQGIVNYKQIPGLGGFSEKIIKEAEEKLRTGGTYSVHNSE 364

Query: 518 F--------------------EIAY-------ENYERQADRGEIKVFRKISAVALWRKM- 549
           F                    +  Y       E Y+ +  +   + + ++  V  W +M 
Sbjct: 365 FLTGANISVCLTSDFMEAVENDAEYELRFPDVEKYDEEEMKFYNENWHEVGDVREWEQMG 424

Query: 550 ----------LTMLFE--------TGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITL 590
                        L+         +  P I F D  N ++  +  G  V ++N C E  L
Sbjct: 425 YKVRTYRKMRAKELWNLINVCATYSAEPGIFFIDNANDKTNAKAYGQKVVATNPCGEQPL 484

Query: 591 NSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
              S    VCNL ++NL   A   N   D+DKL  T+   VR+ DNVID   + +E+ KK
Sbjct: 485 APFS----VCNLAAVNLAEFADKENKTVDFDKLKKTVEVGVRMQDNVIDATPYFLEQNKK 540

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L      Y S E  ++ DE  E I+  A  ASVEL++E+G++
Sbjct: 541 QALGERRVGLGVMGLADLLIYCEKEYGSEEGNKLVDEVFETIAVTAYRASVELSKEKGSF 600

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
              +G   ++             +R+            +++++ +   G+RNS+ + +AP
Sbjct: 601 PFLQGETEEE----------TNRLREAFINTGYMSEMPEDVRQSILDNGIRNSHLLTVAP 650

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +   + GV+  ++P +   Y +S   G F  V + +V E  +R               
Sbjct: 651 TGSTGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVQEYLER--------------- 695

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
               N E  PD L +   ++ E+ P    +     Q+WID + S  +      +  ++  
Sbjct: 696 ----NPEVNPDSLPEWFVSSMELAPEAHADVQCVIQRWIDSSISKTVNAPRGYTVDQVQG 751

Query: 888 IYRQAWLMGLK--TTYYLRSRSATSV----------EKSTLKGVDGKLNAVPVTDPNSST 935
           +Y + +  G K  T Y   SR +  +          ++ T +        V + D     
Sbjct: 752 VYERLYKGGAKGGTVYVDGSRDSQVLTLKAEENSFDDEETEQQAPQGKKPVVLVDTIQDV 811

Query: 936 HSLGIPSSCTSDTECEVC 953
            +  +         C VC
Sbjct: 812 RATDVTIGSEVGNTCPVC 829


>gi|152974879|ref|YP_001374396.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023631|gb|ABS21401.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 462

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 209/492 (42%), Gaps = 57/492 (11%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +
Sbjct: 1   MQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHV 60

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F+P  V   +  +  + +I     E  ++    K    +SA  +  K+  +  E+G+P++
Sbjct: 61  FAPYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKSLDLSARDMLIKIAMIQLESGYPYL 120

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLA 609
            FK   N + P +++G V  SNLCTEI     + E               CNLGS+N++ 
Sbjct: 121 MFKSNANQQHPLKNIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVN 180

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              N +     +   +   +  L  V D+         KK+N    ++GLG M     L 
Sbjct: 181 VMENKE-----IREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLA 235

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP----- 722
              I Y S EA E        +++++I  S+ +A+E+   +  F  S +  G +      
Sbjct: 236 KNKIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYET 295

Query: 723 IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D   +  +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S
Sbjct: 296 TDYSPVTEKVQQLFEGIYIPTKEDWTSLKEEVQKYGLYNSYRLAIAPTQSISYVQNATSS 355

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  ++  +        +L  +      W                         
Sbjct: 356 VMPIVSQIESRTYANATTYYPMPYLSKD----TFW------------------------- 386

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
              + +A++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ 
Sbjct: 387 --YYKSAYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSL 444

Query: 901 YYLRSRSATSVE 912
           YY R+R  +  E
Sbjct: 445 YYTRTRKLSVEE 456


>gi|228990453|ref|ZP_04150418.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996555|ref|ZP_04156194.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004205|ref|ZP_04162006.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757066|gb|EEM06310.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763187|gb|EEM12095.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768979|gb|EEM17577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 462

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 208/492 (42%), Gaps = 57/492 (11%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +
Sbjct: 1   MQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHV 60

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F+P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++
Sbjct: 61  FAPYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKPLDISARDMLIKIAMIQLESGYPYL 120

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLA 609
            FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++ 
Sbjct: 121 MFKSNANKQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVN 180

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              N +     +   +   +  L  V D+         KK+N    ++GLG M     L 
Sbjct: 181 VMENKE-----IREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLA 235

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP----- 722
              I Y S EA E        +++++I  S+ +A+E+   +  F  S +  G +      
Sbjct: 236 KNKIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGSYFEKYET 295

Query: 723 IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D   +  +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S
Sbjct: 296 TDYSPVTDKVQQLFEGIYIPTKEDWTSLKEEVQKHGLYNSYRLAIAPTQSISYVQNATSS 355

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P    +  ++  +        +L  +      W                         
Sbjct: 356 VMPIVSQIESRTYANATTYYPMPYLSKD----TFW------------------------- 386

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTT 900
              + ++++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ 
Sbjct: 387 --YYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSL 444

Query: 901 YYLRSRSATSVE 912
           YY R+R  +  E
Sbjct: 445 YYTRTRKLSVEE 456


>gi|222480783|ref|YP_002567020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222453685|gb|ACM57950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 1056

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 145/685 (21%), Positives = 256/685 (37%), Gaps = 117/685 (17%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A  F + + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EATADRFRDGMESLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFLD-----------LRKNTGDDRR------------------------------ 474
           H DV +F+            LR N  DD                                
Sbjct: 262 HPDVIQFIHSKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDEDGKVPEHLRNAVE 321

Query: 475 -RTHDMNTANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKEFEIAYEN 524
               + N +  + D FM+ +  +  +T  +P          E  +++D++G         
Sbjct: 322 GHLSNFNISVGVTDDFMEALYNDEEFTFTNPRTEEPHIATPETKEIYDMFG--------- 372

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                +  E+     I A  LW  M+    E G P + + +  N               L
Sbjct: 373 ---LGEHVEVGEVLSIPADELWDDMIEGAHENGEPGVIYLERVNKEHSFDTKEHPDHRIL 429

Query: 585 CTEITLNSSSEETAVCNLGSINL----------------------------LAHFANNQF 616
            T        EE   CNLG INL                            ++ F     
Sbjct: 430 ATNPCGEQPLEEYEACNLGHINLSTLAAQDAPDWRVWSDEHADEYDTEEAAMSAFLEEAI 489

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++    I    R L+NV+ ++   +EK ++     R IGLG+MG       L I Y +
Sbjct: 490 DFEEFDERIDYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGVMGLAQLYIQLGIQYGT 549

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
               E+A + M  I+  +   S ELA ERG ++ ++ S +              E RD  
Sbjct: 550 EPGNEVARQLMTHINHASKQTSHELATERGTFNDWEESKYANPT----------EYRDWF 599

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                + L  DE +       +RN N   IAPT T + I   +   +P Y   Y K+   
Sbjct: 600 EH--YTGLDADEWED---GFPIRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNVSD 654

Query: 797 ---GDFTVV--NSFLVNELKQRDLWDEAMISDLKYHDGS-----IGNIERIPDDLKKIHA 846
              GD  +V  + + +  L++ D+  +A+  + +    +     +  +E +PD + ++  
Sbjct: 655 DVQGDEMLVEFDDYFLRTLEENDVDVDAVKQEAQEQMATNEFDGVDGLETVPDAIGELFV 714

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              ++            Q+ +D A S    + ++ + ++++ +YR  +  G K     R 
Sbjct: 715 VTGDLSGKQHASVQCACQEGVDSAISKTCNFPNDATAEEMEEVYRYIYDHGGKGVTVYRD 774

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
            + +    +T        +     +
Sbjct: 775 GTRSKQVLTTRAKNAEFADESEAAE 799



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 304 RYFLHI-NGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEF 342
           RY     +G  IE P+  F RVA  +AL E   E EK+ VE 
Sbjct: 39  RYLRKNADGEPIENPEGLFDRVARNVALAEAVFEAEKQGVEV 80


>gi|218673204|ref|ZP_03522873.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 442

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 199/477 (41%), Gaps = 63/477 (13%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++   D++ R   ++    +PD+  +    N    LFSP +V  ++ +   E  +  E Y
Sbjct: 1   KRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVYGVPFTEISVT-EKY 59

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   I   +KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC
Sbjct: 60  REMVADARISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN--PIAGRISMSNLC 116

Query: 586 TEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S + E               CNLGS+N+ A       D      TI T++R L 
Sbjct: 117 SEILQVSEASEYNEDLSYKHLGKDISCNLGSLNIAA-----AMDSADFGKTIETSIRALT 171

Query: 634 NVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D++   ++   +K N    AIGLG M     L    I Y S E V+  +     +++
Sbjct: 172 AVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTY 231

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE--------VRDELAMNRTSR 743
           HAI AS  LA ER  ++  F+ S +  G +         +        + D+  ++  ++
Sbjct: 232 HAIRASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQ 291

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK  V T G+ N N  A+ PT +I+ I   + SI P    + ++           
Sbjct: 292 EDWAALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK---------- 341

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         E  I  + Y          + +D    +  A+EI    +I++ +  
Sbjct: 342 --------------EGKIGRVYYPA------PFMTNDNLDYYQDAYEIGAEKIIDTYAAA 381

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            + +DQ  SL L+  D  + + ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 382 TQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 437


>gi|134291696|ref|YP_001115465.1| hypothetical protein Bcep1808_6310 [Burkholderia vietnamiensis G4]
 gi|134134885|gb|ABO59210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 598

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 145/647 (22%), Positives = 241/647 (37%), Gaps = 85/647 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPT 357
           +  +RY      SR     A F RVA  L+L E  + +   E  F+  L           
Sbjct: 10  VFAERYAQPGETSRA----AVFQRVARALSLAEPPELRAQCERAFFQNLQRGAIGAGRIL 65

Query: 358 LFNSGTRHPQLSSCFLTT--VPDDLYGIF------GALQENAMLAKYSGGLGNDWTPVRG 409
                     + +CF+    +P D            AL +        GG+G D++PV  
Sbjct: 66  ANAGADTGGTMVNCFVHPLAMPADTRARAVDAALTHALGDARRTLLMGGGIGYDFSPVPP 125

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           L A+       +      +   +    A+   G R+GA  A L   H D+  F+  ++  
Sbjct: 126 LDAYERRAASDAG-ACAAIDRFDAMCRALPFTGPRRGAQMAVLRCDHPDLAAFVAAKRG- 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  I D FM+ V  +  W L        +H        +A        
Sbjct: 184 ---RSRWPTFNVSVGITDAFMEAVLHDRPWAL--------VHRAPPHRASVAAPR----- 227

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V+  ++A  LWR+++    ++  P + F D     +P +    + ++N C E  
Sbjct: 228 QPDGNHVYTTVAARTLWREIVAAARDSAEPGLLFVDTIRDANPLREHERIDATNPCGEQP 287

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L +       C LG I+L              +FD+  LA  +R  VR+LDNV+D+    
Sbjct: 288 LPAYGS----CVLGPIDLSRFVLHPFGVEGKPRFDFATLADAVRIQVRMLDNVLDLTAWP 343

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   ++     R IG+G+ G   AL +L + Y S +A   A   +  +  HA +AS  LA
Sbjct: 344 LAAHQREARRTRRIGVGVTGLADALTMLRLRYDSADARAFARSIVLSMREHAFAASAALA 403

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERGA+ ++  + +  G      + L                    ++  +   G+RNS+
Sbjct: 404 AERGAFPAYDPADYLTGPAHRTLLPL-------------------NVQHAIARHGLRNSH 444

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ AP  +++       S  I+P+      +   + D   V  F       R       
Sbjct: 445 LLSFAPAGSVSLAFCDNCSNGIEPAVGWTQRRMVHTADG-RVRQFHAQNHAYRLF----- 498

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDE 879
                      G  ER+PD       TA EI P   +   +  Q  +D   S  +   D 
Sbjct: 499 -------RALHGEHERLPD----YFVTAAEIAPADHVAMLAALQPCVDAGISKTVTLPDR 547

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRS---RSATSVEKSTLKGVDGKL 923
            S  ++D ++ QAW  GLK     R     +A  ++ +T    DG +
Sbjct: 548 CSLAQVDALFVQAWRDGLKGITVFRPDPRLAAVVMDDATQARRDGPV 594


>gi|309782687|ref|ZP_07677408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
 gi|308918465|gb|EFP64141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
          Length = 600

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 131/647 (20%), Positives = 223/647 (34%), Gaps = 77/647 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA--VEFYNLLSSFHFMC 353
           L   +L DRY               F RVA  LA  E   ++      FY  L       
Sbjct: 10  LSTAVLADRYLAPGET----TCNDVFKRVAHALAAAEQPDQRAHFTRLFYANLLQGAIGA 65

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPD------DLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                      H  + +CF+  +        D   +  AL       +  GG+G D++ +
Sbjct: 66  GRIMANAGSANHGTMVNCFVHPIGASEQSVADASDVERALHAAQRTLQMGGGVGYDFSVI 125

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
               A    +   +  V   L   +           R GA  A L   H D+  F+  ++
Sbjct: 126 APADAEQATSYSGTGSVCAVLDSFDRVCTTQALVNTRGGAQMAVLRCDHPDLAAFITAKR 185

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
                R+R    N +  + D FM+ V  +  W L      +      G            
Sbjct: 186 G----RKRWATFNLSVAVTDAFMQAVADDGLWCLQHRAVPNAQRLATGAH---------- 231

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A       +  + A  LW  +      +  P + F D  N  +    +  + ++N C E
Sbjct: 232 -ALSNGKWCYAVVPARQLWNMIAEAAHHSAEPGLLFIDTINAANDLAEIETIAATNPCGE 290

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
             L         C LG I++               FD+  L+  +R  VR+LDN I+I  
Sbjct: 291 QPLPPWGS----CVLGPIDVSRWVQWPFGMGGQPLFDFVGLSQAVRVQVRMLDNAIEITR 346

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + +        R IG+G+ G   AL ++ +PY +P A   A +    +  +A +AS  
Sbjct: 347 WPLPEHMHEAQAKRRIGVGVTGLADALTMMCLPYDAPAARCFAAQIGRCLRDNAYAASAA 406

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG Y  F                  +  R   + + ++ LP   + + V   G+RN
Sbjct: 407 LACERGPYPLF------------------SPERSLASGHFSAALP-KAVCEAVAKHGLRN 447

Query: 761 SNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           S+ +++APT +++   G   S  I+P++  +Y +             L     +      
Sbjct: 448 SHLLSLAPTGSVSLAFGDNCSSGIEPAFDWVYQRRVR---IQHRAPQLYRIENRAYRLFR 504

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYL 877
           A+        G                 TA +ID +  +   +  Q ++D + S   L  
Sbjct: 505 ALYGQRAALPG--------------YFVTARQIDGLDHLRMVATLQPFVDASISKTVLLP 550

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
              S  ++  +   AW + LK     R  +      S L  ++G+  
Sbjct: 551 CSASCAQVAALLFHAWQLRLKGITIFRPDTGPDDVLSELPPLNGRPT 597


>gi|313125840|ref|YP_004036110.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
 gi|312292205|gb|ADQ66665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
          Length = 1044

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 141/654 (21%), Positives = 246/654 (37%), Gaps = 101/654 (15%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G  
Sbjct: 150 DMMESLSFMPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAEVFQSGGGMGYA 209

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +F+
Sbjct: 210 FWKLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVIQFI 269

Query: 464 DLRKNTG------------------------------DDRRR------------THDMNT 481
             +                                  DD  R              + N 
Sbjct: 270 HAKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDDEGRVPKHLRNAVEGHLSNFNI 329

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM+ +     +   +P    + H    +  EI YE +    +  E+     + 
Sbjct: 330 SVGITDDFMEALENGEEFVFTNPRT-EEPHIATPETKEI-YEMF-GLGEHVEVGEVLSVP 386

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW +M+   +E G P + + +  N +             L T        EE   CN
Sbjct: 387 AEKLWDQMVDGAYENGEPGVIYLERVNKQHSFDVEKHPEHRILATNPCGEQPLEEYEACN 446

Query: 602 LGSINL----------------------------LAHFANNQFDYDKLASTIRTAVRVLD 633
           LG INL                            +  F     D+++    I    R L+
Sbjct: 447 LGHINLSTLADLDAPDWRVWQAENGDDYDSIEDAVDAFLEEAIDWEEFDHRIDNGTRFLE 506

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV+ ++   +EK ++     R IGLG+MG       L I Y S    E+A + M  I+  
Sbjct: 507 NVVTMSDFPVEKIEEKVRAMRKIGLGVMGLAQLYIQLGIRYGSDSGNEVARQLMTHINHQ 566

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDELKKR 752
           +  AS ELA+ERG +  +  S +              E R+    +       W++    
Sbjct: 567 SKWASHELAEERGTFEDWDDSKFADPT----------EYREWFEHHTGLDADEWED---- 612

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVV--NSFLV 807
                +RN N   IAPT T + +   +   +P Y   Y K+      GD  +V  + + +
Sbjct: 613 --GFPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYFL 670

Query: 808 NELKQRDLWDEAMISDLKYHDG-----SIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             L+  D+  +A+  + +          +  +E +P+ + ++     ++           
Sbjct: 671 RVLEANDIDVDAVKEEAQEQMANNEFDGVEGLETVPNAIGELFVVTSDLSGKDHAAVQCA 730

Query: 863 RQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            QK +D A S    + +  S + +D +YR  +  G K     R  + +    +T
Sbjct: 731 CQKGVDSAISKTCNFPNSASKEDMDEVYRYIYNNGGKGVTVYRDGTRSKQVLTT 784


>gi|260654687|ref|ZP_05860177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
 gi|260630703|gb|EEX48897.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
          Length = 881

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 166/787 (21%), Positives = 284/787 (36%), Gaps = 153/787 (19%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M       + +  E+ +   L +    D D+  L N L              +L  RY L
Sbjct: 1   MSQYSKHTYVQNGEKQMHVFLKNRFRSDIDVGLLENPLSP----RGSENARWLLAQRYCL 56

Query: 308 -HINGS----RIEM-PQAFFMRVAMGLALKETEKE---------KRAVEFYNLLSSFHFM 352
              +      R E   +    RV+  LA  ET                  ++ + +F F+
Sbjct: 57  DRWDDELKACRPERGIEEVARRVSRVLAASETAYAPESEIGWIRTLEKNLFSDILNFQFL 116

Query: 353 CSTPTLFNSG--------------------------------TRHPQLSSCFLTTVPDDL 380
            ++P L+  G                                T + QL +CF+ +VPD +
Sbjct: 117 FNSPCLYGCGAGLTVQPQWSRIIYCSPDELSWEDYRRLAEGRTANQQLFACFVVSVPDSI 176

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG-TNGKSQGVIPFLKVANDTAVAVN 439
            GIF A+++ A+++KY GG+G ++  +R  GA I G T GK+ G + F++  N     V 
Sbjct: 177 EGIFDAVKDAAIISKYGGGVGANFGHLRESGAPIKGGTGGKASGPVSFMETWNTMGSVVV 236

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG+R+ A+   L   H D+E F+D +   G    R    N +  + D  +    +   +
Sbjct: 237 QGGRRRAALMGMLPDNHPDIERFMDAKTEDG----RLPYFNISVCVSDRLVNAAREGGDF 292

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            L S                           R + K    + A  LW K+ +  +  G P
Sbjct: 293 PLVS---------------------------RVDGKTAATVPAAQLWDKLCSNAWRRGDP 325

Query: 560 WITFKDPCNIRSPQQHVG--VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--- 614
            + F D     +  +     V+ S+N C E  L + +     CNLGSINL A  A +   
Sbjct: 326 GVFFIDRAGADNLLREDPEFVIESTNPCGEQPLPNYTS----CNLGSINLSAFVAPDGSG 381

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD  +    +  ++  LD VID   + +E+  +     R +GLGLMG   A     +
Sbjct: 382 QLAFDEARFVDQVYRSMVYLDLVIDSCSYPLERIGRRTRQIRPVGLGLMGLSDAAIASGL 441

Query: 673 PYASPEAVEIADESMEFISFHAISASVE----LAQERGA--------YSSFKGSL----- 715
            Y SPE     D     ++  A+ A+V+    L +E  A        ++  +  L     
Sbjct: 442 VYGSPEFSGFCDRLASVMAVCALLATVDSVDHLGKEPFAASSAVVKLFAPLRDELGGDLF 501

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRL-----------------PWDELKKR---VKT 755
             Q +  +D  G L  V     +     L                   +EL++    V  
Sbjct: 502 MSQTMETLDEEGFLRVVGRMKELGLPYTLCNTLQAAPGVLKRLEGGSPEELRRLLGAVLG 561

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS--GDFTVVNSFLVNELKQR 813
             MRNS  ++IAPT +I+ +   S  I+P++   + +  M   G+      +    +   
Sbjct: 562 GRMRNSRRLSIAPTGSISMLLDASAGIEPNFAWSWNRKVMKSDGNGYETRQYFHRLVTDE 621

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                +    L+                     TA+++ P   +E      +++D   S 
Sbjct: 622 GKRQLSAGGKLEDPR----------------FVTAYDLSPEGHVEVTGIFARYVDSGISK 665

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            + L    +   +  +Y + + +G K     R  S +       K  +    A P  D  
Sbjct: 666 TVNLPSSATVDDVKAVYERCYDLGCKGITIYRDGSRSEQPIEVSKPAEK---AAPAPDGQ 722

Query: 933 SSTHSLG 939
           +      
Sbjct: 723 TPVVKTA 729


>gi|294054517|ref|YP_003548175.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613850|gb|ADE54005.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
          Length = 971

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 157/745 (21%), Positives = 266/745 (35%), Gaps = 112/745 (15%)

Query: 292 AFEYLGLQILYDRYF-----LHIN---GSRIEMPQAFFMRVA-----MGLALKETEKEKR 338
           AF  L  +IL  +YF     L  +   G R    +    RVA      GL     E   +
Sbjct: 64  AFSDLATKILSSKYFYGDIDLGTDPNTGGRESSFKQVVDRVAGTITEWGLTDGYFENADQ 123

Query: 339 AV----EFYNLLSSFHFMCSTPTLFNSGTRH----------------------------- 365
           A     E   LL + +   ++P  FN G  H                             
Sbjct: 124 AKVFGEELTWLLVNQYGAFNSPVWFNLGLYHAYGVGKDSCKGNFYWDQDHEVVMRANSQY 183

Query: 366 --PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQ S+CF+  V D++  I    +  AML K+  G G D + +R     +    G+  G
Sbjct: 184 EFPQCSACFIQHVDDNMDSIMELARSEAMLFKFGSGSGTDLSSIRSTREKLS-GGGRPSG 242

Query: 424 VIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
            + FL V +  A  V  GGK R+ A    L+ WH D+EEF++ +     + R+   +   
Sbjct: 243 PLSFLSVYDAVAGVVKSGGKTRRAAKMNVLKDWHPDIEEFIEAKTI---EERKAWALIEE 299

Query: 483 NWIP----DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            + P    D +     QN   ++ + D          K F             GE    +
Sbjct: 300 GYDPSFNGDAYGSIKYQNENLSVRASDTFMQAATTGSKFFTKR-------VTDGEPCEEK 352

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  L  ++       G P + F D  +     +  G  + +N C+E     ++    
Sbjct: 353 --DASYLLDRISEGTHVCGDPGMQFDDTIHKWHTCKGSGRQNCTNPCSEYLFLDNT---- 406

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNL S+NL+        D ++ A+  +  +   + V+D + +  E    ++H  R +GL
Sbjct: 407 ACNLASLNLMKFRTAEGLDAERFAAAAKIFIIAQEIVVDRSSYPTEAITYNSHWFRTLGL 466

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------- 711
           G     + L      YAS E + +A      ++  A   S ELA  +  +  +       
Sbjct: 467 GYANLGALLMSYGYAYASDEGLGLAKAITATMTGVAYKTSAELAALKTPFPGYKDARHHG 526

Query: 712 -KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP------------WDELKKRVKTIGM 758
            +       V  + ++  L +   E   ++T+R              W E     K  G 
Sbjct: 527 VENPPEADNVASMQAVIELHKSHAESLASQTARGELAEATAQYAQRVWKEAADLGKRYGY 586

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    +APT TI  +    +  ++P+   +  K+   G    +    +    +   +D
Sbjct: 587 RNAQVTVLAPTGTIGFLMDCDTTGVEPAIGLVAYKTLAGGGLMTIPIKSIPLAMETMGYD 646

Query: 818 EAMISDLKYHDGSIGNIERIP-----------DDLKKIHATAFE-------IDPMWLIES 859
           +A I  +  H    G +E I            D+   +  +AF+       +     I+ 
Sbjct: 647 QAAIDQVCAHVKEYGTVENISVSGKQIQSGLKDEHIPVFDSAFKSGMGQRYLPYTAHIDM 706

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            S  Q ++  A S  + +  E + K++   Y  AW  G+K     R  S  S    T K 
Sbjct: 707 MSAVQPFLSGAISKTVNMPQEATIKEIRETYIHAWKKGIKGIAIYRDGSKRSAPIKTTK- 765

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS 943
            D    A P        +   +P +
Sbjct: 766 -DEPKEAKPEVQVTMEPYRRKLPDT 789


>gi|206562176|ref|YP_002232939.1| ribonucleotide reductase-like protein [Burkholderia cenocepacia
           J2315]
 gi|198038216|emb|CAR54169.1| putative ribonucleotide reductase [Burkholderia cenocepacia J2315]
          Length = 608

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/625 (22%), Positives = 228/625 (36%), Gaps = 82/625 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPT 357
           +  +RY      SR     A F RVA  L+L E    +  VE  F+  L           
Sbjct: 20  VFTERYAQPGETSRT----ALFHRVAHTLSLAEPADLRAQVERAFFRNLQHGAIGAGRIL 75

Query: 358 LFNSGTRHPQLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
                     + +CF+  +        P     +  AL +        GG+G D++PV  
Sbjct: 76  ANAGADTGGTMVNCFVHPLAIPPGARWPAVDAALARALSDAWRTLLMGGGIGYDFSPVPP 135

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA+        +G    +   +    A+   G R+GA    L   H D+  F+  ++  
Sbjct: 136 AGAYERCV-SSERGACVAIDRFDAMCRALPFTGPRRGAQMGVLRCDHPDLAAFVASKRG- 193

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  + D FM+ V Q+  W L              +  +  Y       
Sbjct: 194 ---RSRWPTFNLSVGVTDAFMEAVRQDLPWALVHHARPRSGACAPIRRPDGRY------- 243

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 ++  I A  LW +++    ++  P + F D     +P +    + ++N C E  
Sbjct: 244 ------LYATIPARTLWHEIVGAARDSAEPGLLFLDTIRDTNPLREHERIDATNPCGEQP 297

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L         C LG I+L              +FD+  LA  +R  VR+LDNV+D+    
Sbjct: 298 LPPYGN----CVLGPIDLSRFVHHPFGVGGKPRFDFPGLADAVRIQVRMLDNVLDLTEWP 353

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +      R IG+G+ G   AL +L + Y   EA   A   +  +  HA +AS  LA
Sbjct: 354 LAAHEHEARRTRRIGVGITGLGDALTMLRLRYDGTEARAFARSIVLTMREHAFAASAALA 413

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG + ++  + +  G      + L                   ++   +   G+RNS+
Sbjct: 414 AERGVFPAYDPAAYLTGPAHRTLLPL-------------------KVHHAIARHGLRNSH 454

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ AP  +++       S  I+P+      +   + D   V  F V     R   D   
Sbjct: 455 LLSFAPAGSVSLAFCDNCSNGIEPALGWTQRRLVRTADG-RVRPFRVENHAYRLFRD--- 510

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                 H  S+G        L     TA +I P   +   +  Q  +D   S  + L E 
Sbjct: 511 -----LHGDSVG--------LPDYFVTAADIAPADQVAMLAALQPCVDAGISKTVTLPEQ 557

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            S  ++D ++ QAW  GLK     R
Sbjct: 558 CSLAEVDALFFQAWRDGLKGVTVFR 582


>gi|172065487|ref|YP_001816199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
 gi|171997729|gb|ACB68646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
          Length = 598

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/647 (21%), Positives = 238/647 (36%), Gaps = 85/647 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCSTPTL 358
           +  +RY      +R     A F RVA  L+L E    +  VE    L+     + +   L
Sbjct: 10  VFAERYAQPGETTRA----AVFHRVAHALSLAEPADFRAQVERAFFLNLQRGAIGAGRIL 65

Query: 359 FNSGTR-HPQLSSCFLTTVP-------DDLYGIFGALQENAMLAK-YSGGLGNDWTPVRG 409
            N+G      + +CF+  +P         +        ++A L     GG+G D++P   
Sbjct: 66  ANAGADTGGTMVNCFVHPLPIPAGMPVQAVDAALAHALDDARLTLLMGGGIGYDFSPAPP 125

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A+         G    +   +    A+   G R+GA    L   H D+  F++ ++  
Sbjct: 126 ADAYERRF-SSESGACAAIDRFDAMCGALPFAGPRRGAQMGVLRCDHPDLVAFVNAKRG- 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  I D FM+ V  +  W L    +         +  +  Y       
Sbjct: 184 ---RSRWPTFNLSVGITDAFMEAVAHDLPWALVHQTQRHGASGAPARRPDGRY------- 233

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 ++  + A  LW +++    ++  P + F D     +P +    + ++N C E  
Sbjct: 234 ------LYATVPARTLWHEIVNAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQP 287

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L         C LG I+L               FD+  LA  +R  VR+LDNV+D+    
Sbjct: 288 LPPYGS----CVLGPIDLSRFVRHPFGVDGKPHFDFATLADAVRVQVRLLDNVLDLTAWP 343

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +      R IG+G+ G    L +L + Y S EA   A   +  +  HA +AS  LA
Sbjct: 344 LAAHEHEARRTRRIGVGVTGLGDTLTMLQLRYDSVEARAFARGIVLTMREHAFAASAALA 403

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERGA+ ++  + +  G      + L                   ++ + +   G+RNS+
Sbjct: 404 AERGAFPAYDPAAYLAGPAYRMLLPL-------------------KVHRAIAQHGLRNSH 444

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ AP  +++       S  I+P+      +   + D   V  F V     R       
Sbjct: 445 LLSFAPAGSVSLAFCDNCSNGIEPALGWTQHRVVRTADG-RVRRFRVENHACRLFR---- 499

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
               + H  S+         L     TA +I P   +   +  Q  +D   S  + +  +
Sbjct: 500 ----ELHGDSVQ--------LPDYFVTAADIAPADHVAMLAALQPCVDAGISKTVTIPGQ 547

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRS---RSATSVEKSTLKGVDGKL 923
            S   +D ++ QAW  GLK     R     +A   + +     DG +
Sbjct: 548 CSLADVDALFFQAWRDGLKGITVFRPDPRLAAVVTDDAAQARRDGPV 594


>gi|282858151|ref|ZP_06267346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
 gi|282584073|gb|EFB89446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
          Length = 894

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/745 (21%), Positives = 265/745 (35%), Gaps = 146/745 (19%)

Query: 294 EYLGLQILYDRYFL-----HINGSRIE-MPQAFFMRV------AMGLALKETEKE---KR 338
                 +L  RYF         G R E   + F  RV      A  L     E E   + 
Sbjct: 27  SENARWLLEQRYFADRYDPETGGLRKERSFEEFARRVSRIVCTAESLYRGADEIEWIRRL 86

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSG--------------------------------TRHP 366
               +  L    F+ ++P LF SG                                T + 
Sbjct: 87  EKNLFADLVEGRFIFNSPCLFASGAGMTRVPELAELIYRSPDEMELADYRRLYDGKTDNQ 146

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG-TNGKSQGVI 425
           QL +CF+  +PD + GIF +++  A+++KY GG+G ++  +R  GA I G T GK+ G +
Sbjct: 147 QLFACFVIDIPDSIEGIFDSVRAAAVISKYGGGVGGNFGRLRERGADIKGGTGGKASGPV 206

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F++  N     V QGG+R+ A+   L   H D+E+F+D +   G    +    N +  +
Sbjct: 207 SFMETWNTMGCVVVQGGRRRAALMGMLPDDHPDIEQFMDAKTEEG----KLSYFNISVCV 262

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D  +    +   + L S                           R   KV R +S   L
Sbjct: 263 SDELVGAAREKRPFALRS---------------------------RANGKVVRTVSGDEL 295

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--VHSSNLCTEITLNSSSEETAVCNLG 603
           W K+    +  G P + F D  N  +  +  G   + S+N C E  L + +     CNLG
Sbjct: 296 WNKLCQNAWRRGDPGVFFIDRANDDNLLKLSGDFDIESTNPCGEQPLPTYTS----CNLG 351

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL+     ++     FD +     +  ++  LD VID   + +++  +     R +GL
Sbjct: 352 SVNLVKFVRPDETGRQSFDMEGFMDQVYRSIYYLDLVIDATSYPLQRIGERTKRIRPVGL 411

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           GLMG   A  L    Y S       D     ++  A+ A+V+     G    F  S    
Sbjct: 412 GLMGLADAAILSGDVYGSESFKSFCDSLGAHMAGAALMATVDAVAHMGKEP-FSESFAVA 470

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG--------------------- 757
            +F  +      E+     ++      + E   R++T G                     
Sbjct: 471 RLFEEEHRAHGGELFARQWIDEMDLNSYREFIARMRTHGQVPYTLLNTLEILPDVLGDEA 530

Query: 758 ---------------MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS--GDFT 800
                          +RNS  ++IAPT +I+ I   S  I+P++   + +  M   GD  
Sbjct: 531 LPELKRLMTALLEGKLRNSRRLSIAPTGSISMIFDSSAGIEPNFAWRWSRKVMKSDGDGW 590

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V  +    + Q++                +     I D     + TA++I P   ++  
Sbjct: 591 EVREYFHPLITQKEAD-------------ELRGSGVISD---PRYVTAYDISPEQHVDVT 634

Query: 861 SRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
               +++D   S  +      +   +  +Y   + MG K     R  S  +    T K  
Sbjct: 635 GIFARYVDSGISKTVNLSSSATVDDVRKVYETCYDMGCKGITIYRDGSRDNQPIETKKES 694

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSC 944
           + K  A        +        S 
Sbjct: 695 ESKSEAPATVTRAEAEEKPSAEESS 719


>gi|76802311|ref|YP_327319.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76558176|emb|CAI49764.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
          Length = 1042

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/670 (22%), Positives = 245/670 (36%), Gaps = 117/670 (17%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A  F   + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 143 EATADAFQEQMESLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQ 202

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 203 SGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRIS 262

Query: 456 HIDVEEFLD-----------LRKNTGDDRRR----------------------------- 475
           H DV +F+            LR N  DD                                
Sbjct: 263 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALEEARELIDEDGKVPKHLRNAVE 322

Query: 476 --THDMNTANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKEFEIAYEN 524
               + N +  + D FM+ +     +T  +P          E  +L+D++G         
Sbjct: 323 GHLSNFNISVGVTDGFMEALKNGEEFTFTNPRTDEPHIATPETKELYDMFG--------- 373

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                D  E+     I A  LW  M+    E G P + + +  N               L
Sbjct: 374 ---LGDHVEVGEELSIPATKLWEHMIEGAHENGEPGVIYLERVNKEHSFDVEEHPDHQIL 430

Query: 585 CTEITLNSSSEETAVCNLGSINL----------------------------LAHFANNQF 616
            T        EE   CNLG INL                            +  F     
Sbjct: 431 ATNPCGEQPLEEYEACNLGHINLSTLADLDAPDWRVWYDEHGDDYETLADAVDAFLEEAI 490

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++ L   I    R L+NV+ ++   ++K ++     R IGLG+MG       L I Y S
Sbjct: 491 DFEALDGRIELGTRFLENVVTMSDFPVDKIEQKVREMRKIGLGVMGLAQLYIQLGIKYGS 550

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E  E+A + M  I+  +   S ELA+ERG +  +  S +             AE R+  
Sbjct: 551 EEGNEVARQLMRHINHGSKWTSHELAEERGVFDEWDKSKYANP----------AEYREWF 600

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
              + + L  DE         +RN N   IAPT T + +   +   +P Y   Y K+   
Sbjct: 601 --EKQTGLDADEWADGFA---IRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSD 655

Query: 797 ---GDFTVV--NSFLVNELKQRDLWDEAMISDLKYHDGS-----IGNIERIPDDLKKIHA 846
              GD  +V  + + +  L++  L  EA+  + +    +     I  +  +PD + ++  
Sbjct: 656 DVQGDEMLVEFDDYFLRVLEENGLDVEAVKEEAQEQMATNEFDGIDGLSTVPDAIGELFV 715

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRS 905
           T   +            Q+ +D A S  +     S  +    ++   +  G K   Y R 
Sbjct: 716 TTGALSAKQHAGVQVACQEGVDSAISKTVNAPNDSTVEDAKDVFEYIYDHGGKGVTYYRD 775

Query: 906 RSATSVEKST 915
            + +    +T
Sbjct: 776 GTRSKQVLTT 785


>gi|293377855|ref|ZP_06624037.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
 gi|292643518|gb|EFF61646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
          Length = 827

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 154/724 (21%), Positives = 270/724 (37%), Gaps = 121/724 (16%)

Query: 312 SRIEMP-QAFFMRVAMGLALKETEKEKRA-VEFYNLLSSFHFMCSTPTLFNSGTRH--PQ 367
             +E+  +    RVA G++  E EK+ +   EFY  L+  + + +   L+ +GT      
Sbjct: 118 KPLELYFEQIAARVARGISDIEGEKKAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTY 177

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG------------------ 409
            +   +  + D   G+    QE   +    GG+G + + +R                   
Sbjct: 178 FNCYVMPFIHDSRGGLAKHRQEVMEIMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSW 237

Query: 410 -----------------LGAHIHGTNGKSQGVIPFL-------KVANDTAVAVNQGGKRK 445
                             GA +   N     +  F+        +  +          R+
Sbjct: 238 LNDLANLTNLVEQGGSRRGAQMIMLNDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQ 297

Query: 446 GA---------------VCAYLETWHI--DVEE-FLDLRKN--------TGDDRRRTHDM 479
            A                  YL   +   D+E+ FL   +         +  D       
Sbjct: 298 LASEKLTFEPLIANEKEWLEYL-VDYPTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGA 356

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSP----DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           N +  +   FM+ V  +  + L  P     + S++ D Y + +    +  E      ++K
Sbjct: 357 NISVCLTKEFMEAVETDQTYELRFPAIEDYDASEMAD-YDQHWMEIGDVREWAETGRKVK 415

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS 594
           + + I A  LW  +      +  P I F D  N  +  Q  G  V ++N C E  L    
Sbjct: 416 IHQTIKARELWDLITYCATYSAEPGIFFIDNANEMTNAQAYGQKVVATNPCGEQPLTP-- 473

Query: 595 EETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              AVCNL +INL           D++KLA  +R +VR  DNVID   +  EK ++    
Sbjct: 474 --YAVCNLAAINLANMVDKETKVVDFEKLADVVRASVRFQDNVIDATPYFFEKNEQQAKG 531

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S +   + D+  E I+  A   SVELA+E+G++    
Sbjct: 532 ERRVGLGVMGLADLLIYCEKVYGSEDGNRLVDQVFEKIAVTAYQTSVELAKEKGSFP--- 588

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                       ++     +R     +   +   + +++ +   G+RNS+ + +APT + 
Sbjct: 589 -------FLVGKTVEETTALRQRFIESGYMKKMPESIRQAILKYGIRNSHLLTVAPTGST 641

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  VN+ +V+E  ++                   
Sbjct: 642 GTMAGVSTGLEPYFSFSYFRSGRLGKFIEVNAEIVSEYLEK------------------- 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQ 891
           N E   D+L     +A E+ P   +      Q+W+D + S  +   +    K++  IY  
Sbjct: 683 NPETAADNLPPFFVSAMELSPEAHVSVQCTIQRWVDSSISKTVNAPKGYQVKQVAAIYED 742

Query: 892 AWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            +  G K  T Y   SR +  +   TL+  D      PV     +  +L    S  ++  
Sbjct: 743 LYQGGAKGGTVYVDGSRDSQVL---TLEADDNVFEE-PVVGVADNQITLDSLESSEAEEI 798

Query: 950 CEVC 953
           C +C
Sbjct: 799 CPIC 802


>gi|227498920|ref|ZP_03929059.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904371|gb|EEH90289.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 757

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 141/649 (21%), Positives = 241/649 (37%), Gaps = 100/649 (15%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGL I  ++Y    +    E   A+  RV+ G             +   L+    F+   
Sbjct: 13  LGLDIWQNKY--RDDS---ETFDAWLDRVSGG-----------DEQVRELIKEQKFLFGG 56

Query: 356 PTLFNSGTRHP----QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             L N G  +      LS+C++     D +  IF    + A    Y GG G D + +   
Sbjct: 57  RILANRGLENKGKKITLSNCYVVEPPEDSIESIFDRAGKLARTYSYGGGCGIDISKLSPK 116

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GAHI+    ++ G I F+ + +     + Q G R+GA+   ++  H DV +F+ L+    
Sbjct: 117 GAHINNAAKQTSGSISFMTLYSLVTELIGQNG-RRGALMISIDCSHPDVVDFIKLKT--- 172

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D  +    N +  I   FM+ V +N  + L             G+  E           
Sbjct: 173 -DLDKVTKANISVRISGDFMEAVKENRKFRLHYTR------KETGETIESL--------- 216

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH--SSNLCTEI 588
                    + A  ++  +    ++   P   F D     +   +         N C E 
Sbjct: 217 ---------VDAAEVFHLLAETNWDYAEPGALFWDRITSWNLLSNTKSFQFAGVNPCAEE 267

Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINC--H 641
            L +       C LGS+NL     +       FD +     I  AVR L++V++     H
Sbjct: 268 PLPAGGS----CLLGSMNLAEFVKDPFTEEASFDQEGFKQAIHVAVRALNDVLEEGLPLH 323

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+ ++S    R IGLG+MG    L  + + Y S EAV+        ++  AI++S  L
Sbjct: 324 PLEEQRESVAKWRQIGLGIMGLGDMLLKMGLTYGSKEAVDFCHTLGFTMADTAIASSALL 383

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ERG+Y  F      +  +   +                     +E  + VK+ G+RNS
Sbjct: 384 AKERGSYEQFCAEEVMETPYFKANTT-------------------EETVQLVKSYGLRNS 424

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             + IAPT T++ + G+S  I+P Y N Y +   S     V   +   + +R +    + 
Sbjct: 425 QLLTIAPTGTLSTMLGISGGIEPIYANYYERKTESLHAADVYYKVYTPIVERYMKQHDLK 484

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
            D                 L     TA  +     I   +  Q+ ID + S  +   +  
Sbjct: 485 DD---------------SQLPSYFVTAMTLPYEDRIAMQAAFQQHIDASISSTVNVPNSF 529

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           + +  + +Y  A+  G K     R     +   +T   V+      P+ 
Sbjct: 530 TVEDTEHLYLLAYESGCKGVTIFRDGCKRAGILTT--HVEDHKKEAPIA 576


>gi|294506192|ref|YP_003570250.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
 gi|294342520|emb|CBH23298.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
          Length = 908

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 142/698 (20%), Positives = 254/698 (36%), Gaps = 106/698 (15%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSS-------FHFMCSTPTLFNSGTRHP--QLS 369
             + R A  +A  E + +     FY LLS        F F        N+GT      L 
Sbjct: 85  DTWYRNARAMAQVEDDTDMWTQRFYQLLSGKGLGTGPFPFTPGGRIFANAGTGLGKATLI 144

Query: 370 SCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           +CF++       D +  I   L   A +    GG G     +R  GA I G    + G +
Sbjct: 145 NCFVSGFQGHDQDSMDEIQAELTRQAKILASEGGYGFCAHIMRPRGARIGGVGSMTPGAV 204

Query: 426 PFLKVANDTAVAVN------------QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
             L V N  A  +             +   RKGA    +  WH D+ EF++ ++  G   
Sbjct: 205 QMLDVWNKQAATIVAGSGMKSDRDDVKDKIRKGAQMVTMGIWHPDIIEFIEAKQEPG--- 261

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R H  N +  I D FM+ V  +  W L  PD   +  + Y + ++   + Y+ +    +
Sbjct: 262 -RLHKFNMSVLITDEFMEAVKNDDTWALRFPD-YENEKEFYKQHWDGNLKAYQEKGGTVK 319

Query: 534 IKV------FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                         A  +W +++   +    P + F D  N  +   +   ++++N C E
Sbjct: 320 TWTDPATGEPAVYEAREIWNRIMDSTYNRNEPGVIFVDTINKENNLAYTEHINATNPCGE 379

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L        VC LG++N+         + +YD +   +  AVR LDNV D++   +E+
Sbjct: 380 QVLPVG----GVCLLGNLNVTQLVDREAGEINYDLVDDLVPLAVRFLDNVNDLSYVPLEE 435

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +++    R IGLG  G  SAL ++   Y S E   +  E  E ++  A  AS  LA+E+
Sbjct: 436 QQRNLQEKRRIGLGHYGDGSALMMMKTRYGSEEGARVMREFQEHLANQAYQASARLAEEK 495

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F    +    F         E+  +L                    G+RNS+ ++
Sbjct: 496 GAFPLFDKDEYLSSPFVQRLSDKTKEMIGDL--------------------GLRNSHLLS 535

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSN--------MSGDFTVVNSFLV--NELKQRD 814
           I PT   + +    S  I+P + + Y++++        ++      N++ V  +      
Sbjct: 536 IQPTGNTSTLGNAPSSGIEPVFMHSYIRTSEQPALPDGINRPPMSPNAYEVGQDIDADGT 595

Query: 815 LWDEAMISD---LKYHDGSIGNIERIP-------DDLKKI-----------------HAT 847
            W      D   L+  +    + +  P        ++K                     T
Sbjct: 596 AWTAEEQGDETVLRCQEEGHTHWQIHPTRDICKDQEVKDYAVRHMETDGTWDPDADWAVT 655

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMG-LKTTYYLRS 905
             ++D    +        ++D + S  + +      +    +Y++A   G +K     R 
Sbjct: 656 TRDLDVDDHLTQMKALAPFVDSSMSKTVNVPNDYPFEDFKELYKKAHDTGVIKGVTTYR- 714

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                   + L G D   +   V    +      +P +
Sbjct: 715 ---AGTMSAVLSGDDDGDDDRTVPRTEAPDRPETLPCA 749


>gi|257387814|ref|YP_003177587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
 gi|257170121|gb|ACV47880.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
          Length = 1053

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 143/661 (21%), Positives = 248/661 (37%), Gaps = 99/661 (14%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A EF + + +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 ENVAGEFQDAMENLSFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWQLRPYGDQVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFLD-----------LRKNTGDDRRR----------------------------- 475
           H DV +F+            LR N  DD                                
Sbjct: 262 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDEDGKVPKHLRNAVE 321

Query: 476 --THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  I D FM  +     +T  +P    +   +  +E +  YE ++   +  E
Sbjct: 322 GHLSNFNISVGITDDFMDALEAGEEFTFTNPRT--NEPHVATEETQELYEMFD-LGEYVE 378

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                 I A  LW +++    E G P + + +  N +             L T       
Sbjct: 379 AGEVLSIPAEKLWERIIGGAHENGEPGVIYLERVNKQHSFDVEEHPDHRILATNPCGEQP 438

Query: 594 SEETAVCNLGSINL----------------------------LAHFANNQFDYDKLASTI 625
            EE   CNLG INL                            +  F ++  D ++    I
Sbjct: 439 LEEYEACNLGHINLSTLADQDAPDWRVWSDAHADEYDALEDAVDAFLDDALDNEEFQRRI 498

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EIA +
Sbjct: 499 ELGTRFLENVVTMSDFPVEKIEEKVREMRKIGLGIMGLAQLYIQLGVKYGSEEGDEIARQ 558

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M  I+  +  AS ELA++RG +  +  S +       D          +  ++      
Sbjct: 559 IMRQINHGSKWASHELAEDRGTFDEWDNSKYA------DPTAYREWFESQTGLDA---DE 609

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVV 802
           W E         +RN N   IAPT T + +   +   +P Y   Y K+      GD  +V
Sbjct: 610 WAE------GFPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLV 663

Query: 803 --NSFLVNELKQRDLWDEAMISDLKYHDG-----SIGNIERIPDDLKKIHATAFEIDPMW 855
             + + +  L++  +  +A+  + +          +  +  +PD + ++  T  ++ P  
Sbjct: 664 EFDDYFLRVLEENGIDVDAVKEEAQEQMADNAFDGVDGLTTVPDAIGELFVTTGDLTPKE 723

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
                   Q+ +D A S  +     S  +    ++   +  G K   Y R  + +    +
Sbjct: 724 HAGIQCACQQGVDSAISKTVNAPNDSTLEDAREVFEYIYEHGGKGVTYYRDGTRSKQVLT 783

Query: 915 T 915
           T
Sbjct: 784 T 784


>gi|118197661|ref|YP_874054.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
 gi|116266352|gb|ABJ91435.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
          Length = 797

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 156/776 (20%), Positives = 285/776 (36%), Gaps = 144/776 (18%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND--LKYE 288
           E L  ++ K +     ++     + F +++E G     L +  ++     L     ++  
Sbjct: 15  EALRVLFDKIKSNFEEDV-----DTFEKFLEYGEPENALTKEEINNVFTELEKLGLIEEI 69

Query: 289 RDFAFEYLGLQI----------------LYDRYFLHINGSRIE----MPQAFFMRVAMGL 328
           +D    +  ++                    +Y L    ++ E     P   F+RVA+ +
Sbjct: 70  KDELSSFYKVKKEDLIDGFFVQNISSEIYKQKYQLKDGKNKNELVDLTPYHTFVRVALAV 129

Query: 329 ALKETEKEKRAVEFY----------NLLSSFHFMC------STPTLFNSG-----TRHPQ 367
           AL      KR +E Y          + LS F+ +       +   + N+G     T    
Sbjct: 130 ALVNARYSKR-LEKYGLDAFKTFVDDFLSFFYILATGRSTGAGRVMSNAGSKLYKTYTTL 188

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           ++   +  +PD ++GI   L E ++  K   G G D++ +R  GA +HG   ++ GV+ F
Sbjct: 189 INCTVMRQIPDSMHGIMETLTEASLTLKAGAGTGYDFSSIRPKGAFVHGAGAETSGVVSF 248

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
            ++ +     +   G R+GA    ++  H +  +    ++N G         N +   P+
Sbjct: 249 AEIFDKMCSTIMSAGGRRGAQMLVIDVRHPESIDLFMAKRNDGV----LRYFNISLLFPN 304

Query: 488 LFMKRVTQNAG-----WTL---FSPDEV---------------------------SDLHD 512
             M++V  +       WT    F+P EV                            + +D
Sbjct: 305 SLMEKVKNDEEFEQWFWTFEMTFTPSEVIEKNGNNVFFIGDKEVVIVENGKLPYEYEEYD 364

Query: 513 LYGKEFEIAYENYERQADRG----EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            +    +     YE          + +VF+++ A  ++  ++   ++   P I F D  N
Sbjct: 365 YFAFGEDHQVMKYENFGKDKYRIYKKEVFKRVRAREIYDIVMQSTYDYAEPGIIFIDNVN 424

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---------NNQFDYD 619
            ++  +    + ++N C E  L         CNLGSI L                 FD+D
Sbjct: 425 NKNVLKGKEYIRATNPCGEQPLPPYGS----CNLGSIFLHRFVKEPFNYDLKPEENFDFD 480

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    R   R LD V DI    + + K++  T R  GLG+ G    L ++ + Y S EA
Sbjct: 481 KLFEVSRLMNRFLDFVNDITNLPLVQLKEAAFTKRRHGLGISGIADTLIMVGLRYGSEEA 540

Query: 680 VEIADESMEFISFHAISASVELAQERGAYS-SFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            +  ++ M  I   +   +V +A   G          W      +D  G L E  +E+  
Sbjct: 541 AKFLEKIMYTIQLASAVENVRMADIYGPAPVGVTLKEW------VDVFGHLKEKLEEIYG 594

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS--QSIDPSYQNLYVKSNMS 796
               +LP            +R S+ ++IAPT TI+   G +    I+P++   Y+++   
Sbjct: 595 EDFYKLP------------LRYSHAISIAPTGTISLTFGNNVANGIEPTFALSYMRNIRL 642

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                          Q +++  A I    Y   +  N         +   T  +I     
Sbjct: 643 PGKKTKT--------QEEVYSFAAILFKNYFGHTNYN---------EYFVTTNDITVDEH 685

Query: 857 IESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           I   +  QK++D A S    +      +     Y +A+ +GLK     R     SV
Sbjct: 686 IRMQASAQKYVDSAISKTCNVPTDYPFEMFKEAYIKAYELGLKGFTTFRFNPKFSV 741


>gi|322434426|ref|YP_004216638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
 gi|321162153|gb|ADW67858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
          Length = 1149

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/646 (20%), Positives = 235/646 (36%), Gaps = 71/646 (10%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +   +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +RG    +  
Sbjct: 175 SFSTTGYTKPQCSACFINSVQDSLDSILTLAKTEGMLFKWGSGAGSNLSSIRGSMETLS- 233

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             G + G + F++  +  A  +  GGK R+ A    L   H D+ +F++ +         
Sbjct: 234 GGGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVVLNVDHPDIVDFIECKSKEEAKAYS 293

Query: 476 THDMNT--ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                   +    + +     QNA  ++   DE       +    E   E   R     E
Sbjct: 294 LIAAGYDGSGPDSEAYSSIFFQNANNSVRVTDE-------FMSAVERDAEFSTRTV--KE 344

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                   A  +  K+    +  G P + +    N     ++   +++SN C+E      
Sbjct: 345 RTPVTTGPARDIMNKIAENTWACGDPGMQYDTTINKWHTSKNTARINASNPCSEYMFL-- 402

Query: 594 SEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             + + CNL S NL+    +  QFD     S I      ++ ++D   +  E   K++H 
Sbjct: 403 --DDSACNLASFNLIKFVDSRGQFDIPAYRSAIAIVTTAMEIIVDSAGYPTEMIAKNSHD 460

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG------ 706
           +R +GLG     + L    +PY S    + A      +   A   S  +A+         
Sbjct: 461 YRPLGLGYANLGALLMSFGLPYDSDAGRDFAGTLTAILCGDAYYQSALIAETCPPLLAAT 520

Query: 707 ------------AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP--------- 745
                       A   F    +      +D I +     +++  ++ S  P         
Sbjct: 521 PFCQQATPEQGGACPGF----YMNREPFLDVIRMHRAEVNKIGKSKHSNEPFSVPQLDSL 576

Query: 746 -------WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMS 796
                  WD      +  G RNS    +APT TI  +    +  I+P    + Y K    
Sbjct: 577 IQASKDAWDAALIHGEHYGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGG 636

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAFE---- 850
           G   +VN+ + + L +    D  M + + Y D  G+I     I  +   +   +F+    
Sbjct: 637 GMIKIVNNTVPSALTKLGYSDADMHAIVSYIDATGTIEGAPAIKAEHLAVFDCSFKPAKG 696

Query: 851 ---IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLK--TTYYLR 904
              I  M  I+  +  Q ++  A S  + L    S + +   Y ++W  G+K    Y   
Sbjct: 697 TRSIHYMGHIKMMAAAQPFLSGAISKTVNLPTDCSVEDIAEAYLESWRQGIKAVAIYRDG 756

Query: 905 SRSATSVEKSTLK-GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           S+ A  +  ST K   D K  A   +   +    + I  +  ++ E
Sbjct: 757 SKGAQPLNVSTDKQKADDKETARKASVAGAEAAQVEIDETIAAERE 802


>gi|327198710|emb|CCA61411.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 580

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 162/645 (25%), Positives = 265/645 (41%), Gaps = 102/645 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            YE D  ++ +GL  + D Y    +G     PQ     V       +  + +     Y  
Sbjct: 5   NYEMDKLYDSVGLLRMKDSYL---SGGEA-SPQDRLASVCNQFGTDDDHRRRL----YEY 56

Query: 346 LSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            S      S+P L  +   +     SC+L  + D + G+   L E   L+   GG+    
Sbjct: 57  ASKHWLSLSSPLLGYNKDKKMSYPISCYLLYLHDTVEGLIDTLSEANHLSVCGGGVSVKM 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
                    I   N KS GV+   K  +   +A  Q G R+G+   YL+  H ++  F+D
Sbjct: 117 G--------IRPLNDKSLGVVSHCKTYDSCVLAYKQ-GSRRGSYAMYLDVSHPEILAFID 167

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK TGD   R  +++ A  + D FM+ + +          E     D +          
Sbjct: 168 IRKPTGDYNMRCLNIHNAICLSDKFMEIIERCT--------EDPSADDSWD--------- 210

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQHVGV-VHS 581
                D     V + +SA  +W+K++ M  +TG P++ F D CN      Q+  G+ +  
Sbjct: 211 ---LVDPSTGVVKQTVSAKLIWQKIIEMRMQTGEPYLCFVDACNRDMNPYQKARGMKIEQ 267

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI--- 638
           SNLCTE+ + ++   +++C L S+N+         ++      I   + +LDNV+     
Sbjct: 268 SNLCTEVIVPTNETRSSLCCLASVNI-----EKYEEWKNNERFIGDTMEMLDNVLTEFER 322

Query: 639 --NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
               H  ++   S    R IG+G++GF S L  + +   S EA  +  E  ++++     
Sbjct: 323 KATSHRFDRVNDSVKKERNIGIGVLGFHSYLQSVGVSIESEEAQRVNIEIFKWLNETCDK 382

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            ++EL   RG      GS                                          
Sbjct: 383 YNLELGSRRGTPEDIAGS------------------------------------------ 400

Query: 757 GMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G R +  MA+APTAT + I G +  SI+P   N+Y +  +SG     N  L      +  
Sbjct: 401 GRRFAYTMAVAPTATTSIIMGNTSPSIEPFRANVYRQDTVSGSQFNKNKNLDRLFDSKGY 460

Query: 816 WDE---AMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
             +    + + +  +DGS+ +++   I    K +  T  E++   L+E A+ R K+IDQ 
Sbjct: 461 GPKLKAKLWTSIVANDGSVQHLDERFITKSEKDVFKTFIEVEQSKLVELAAGRHKYIDQG 520

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QSL L    DEP    +  I+ QAW  GLKT YYLRS   +  +K
Sbjct: 521 QSLTLTFGPDEPVA-NIHRIHLQAWKSGLKTMYYLRSAKISRADK 564


>gi|325526630|gb|EGD04172.1| ribonucleotide reductase-like protein [Burkholderia sp. TJI49]
          Length = 598

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 139/647 (21%), Positives = 242/647 (37%), Gaps = 85/647 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF-MCSTPTL 358
           +  +RY      SR       F RVA  L+L E  + +  VE    ++     + +   L
Sbjct: 10  VFAERYAQPGEASRA----DVFHRVAHALSLAEPAERRAQVERAFFVNLQRGAIGAGRIL 65

Query: 359 FNSGTRHP-QLSSCFLTT--VPDDLY------GIFGALQENAMLAKYSGGLGNDWTPVRG 409
            N+G  +   + +CF+    +P D         +  AL +  +     GG+G D++PV  
Sbjct: 66  ANAGADNGRTMINCFVHPLAIPADAPVQAVDTALEHALADARVTLLMGGGIGYDFSPVPP 125

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A+        +G    +   +    A+   G R+GA    L   H D+  F+  ++  
Sbjct: 126 ADAYERH-QSSGRGACAAIDRFDAMCQALPFTGPRRGAQMGVLRCDHPDLVAFVTAKRG- 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
              R R    N +  + D FM+ V  +  W L              +  +  Y +     
Sbjct: 184 ---RLRWPTFNMSVGVTDAFMEAVRYDLPWALVHHAPPRCASGAPPRLPDGRYLHAMA-- 238

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                      SA  LW +++    ++  P + F D     +P +    + ++N C E  
Sbjct: 239 -----------SARTLWHEIIKAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQP 287

Query: 590 LNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           L         C LG I+L              +FD+  LA  +R  VR+LDNV+D+    
Sbjct: 288 LPPYGS----CVLGPIDLSRFVLHPFSIDEMPRFDFAMLADAVRVQVRMLDNVLDLTAWP 343

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +      R IG+G+ G   AL +L + Y S EA   A   +  +  HA +AS  LA
Sbjct: 344 LAAHECEARRTRRIGVGVTGLADALTMLQLRYDSVEARTFARGIVLRMREHAFAASAALA 403

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG + ++  + +  G   +  + L                   ++   +   G+RNS+
Sbjct: 404 AERGVFPAYDPAAYLAGPAYLTPLPL-------------------KVHHAIARHGLRNSH 444

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++ APT +++       S  I+P+      +  +      +  FL      R L+ E  
Sbjct: 445 LLSFAPTGSVSLAFCDNCSNGIEPAVGWQ-QRRMVRTANGQIRPFLAENHAYR-LFRELY 502

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
             ++K               L     TA EI P   +   +  Q  +D   S  + +  +
Sbjct: 503 GENVK---------------LPDYFVTAAEIAPADHVAMLAALQPCVDAGISKTVTMPGQ 547

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA---TSVEKSTLKGVDGKL 923
            S  ++D ++ QAW  GLK     R          + + L   DG +
Sbjct: 548 CSLAEVDALFFQAWRDGLKGITVFRPDPRLASVVADDAALARRDGPV 594


>gi|325571485|ref|ZP_08146985.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
 gi|325155961|gb|EGC68157.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
          Length = 825

 Score =  303 bits (777), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 163/743 (21%), Positives = 275/743 (37%), Gaps = 131/743 (17%)

Query: 306 FLHINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLF 359
            +    S IE P   F      RVA G++  E+  ++R +E FY  + + + + +   L+
Sbjct: 108 LVKRRKSDIEKPLELFFEQVAHRVAKGISANESHDQERFLETFYQQIVAQNLIPAGRVLY 167

Query: 360 NSGTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG-------- 409
            +GT       +CF+   + D   GI    QE   +    GG+G + + +R         
Sbjct: 168 GAGTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGV 227

Query: 410 ---------------------------LGAHIHGTNGKSQGVIPFL--KVANDTAVAVNQ 440
                                       GA +         +  F+  KV N   +   +
Sbjct: 228 SGRSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFTFILSKVQNPAVLLHLK 287

Query: 441 GGKRKGAV--------------------CAYL-------ETWHIDV-----EEFLDLRKN 468
                 A+                      YL       +  H D+     E+       
Sbjct: 288 KTVTNAAIKQLINEKLQFDPLTKMEERMFTYLAQLPESSDKEHNDMIQKAKEKLRIGGSY 347

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL---YGKEFEIAYENY 525
           T  +       N +  +   FM+ V  +  + L  PD  +        Y  ++    +  
Sbjct: 348 TVKESDFLTGANISVCLTGEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDVR 407

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNL 584
           E  A   ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N 
Sbjct: 408 EWAAAGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNP 467

Query: 585 CTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C E  L       AVCNL +INL  +A       D+ KL  T++TAVR  DNVID   + 
Sbjct: 468 CGEQPLTP----YAVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDATPYF 523

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +K ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA
Sbjct: 524 FDKNEQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELA 583

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+G++    G           +      +R +       +     + + V   G+RNS+
Sbjct: 584 KEKGSFPFLIG----------KNDQETQALRKKFVDTGYMKKMPAHIHEGVLRFGIRNSH 633

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            + +APT +   + GVS  ++P Y   Y +S   G F  +N+ +V+E             
Sbjct: 634 LLTVAPTGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEYL----------- 682

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                   + + ER    L     +A E+ P   +      Q+W+D + S  +   +   
Sbjct: 683 --------MDHPERTKAQLPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGYK 734

Query: 882 GKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSST 935
             ++  +YR  +  G K  T Y   SR +  +   TL+ V+ +L A    +PV   +   
Sbjct: 735 VSQVAKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPV 791

Query: 936 HSLGIPSSC---TSDT--ECEVC 953
            S  I   C   T +    C  C
Sbjct: 792 VSGEICPICHEGTIEEIGGCSTC 814


>gi|313667234|ref|YP_004049635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153865|gb|ADR37715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 927

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 131/624 (20%), Positives = 235/624 (37%), Gaps = 109/624 (17%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK---- 429
             VPDD+ GI  A  E    A     +  D++ +R  GA +  + G + G + FL     
Sbjct: 203 IEVPDDMGGIIDAATEAVRRALAGEQVYVDFSALRPEGAPVKRSGGTASGPVSFLSEIFD 262

Query: 430 ---------------------VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
                                V       V QGG R+GA  A L   H DV +FL  +  
Sbjct: 263 HFLYWARLGGVESGPVATLRYVYAPILRVVRQGGTRRGAGMATLSWQHPDVLDFLTAKDL 322

Query: 469 TGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             ++        N +    +        ++G+          LH + G         Y+ 
Sbjct: 323 DREEAEGDIATFNISVLADNELFDGPAVDSGY----------LHPVPG--------KYDS 364

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
                +++ +       +  ++    + TG P + F D  N +SP + +     + ++N 
Sbjct: 365 LPTLSDVRPW-------ILEQIAEHAWATGEPGLIFIDRINEKSPLKVLDERWRITATNP 417

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI L         C+LG++ L ++  +  FD       +R AVR LDNV+D+  + ++
Sbjct: 418 CGEIPLAKGE----ACDLGAMILPSYVKDGAFDEAAFRRDVRLAVRFLDNVLDVTRYAVK 473

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +++    R +GLG+MG    L L+   Y  PEA E+ +  +  +   A++ S  LA+E
Sbjct: 474 DNEETQALTRRLGLGVMGLADMLILMGYRYDDPEAREVVEHVVGILRDEALAESERLAEE 533

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG +      L+ Q     +++G+                              RN   +
Sbjct: 534 RGVFP-----LYAQHQKEFEALGIRPR---------------------------RNLALL 561

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK----------QRD 814
            +APT T++ + GVS  I+P +     +        +V+      L+             
Sbjct: 562 TVAPTGTVSMVAGVSSGIEPIFAAFVWRRIGEQYVPLVHPLFARLLEGFEPPEGYRTPEG 621

Query: 815 LW-DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID----- 868
            W  E++++ L+ H GS   ++ +P  ++ +  TA ++ P   +   +  Q+  D     
Sbjct: 622 RWNMESVLAALQEHHGSPQQLDFLPQAIRDVFVTAHDVAPEDHVAMQAAVQRAFDASEQL 681

Query: 869 --QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
              A S      +E + + +  +YR AW +G K     R  S      +T K  D     
Sbjct: 682 VGNAISKTTNLPNEATVEDVLTVYRTAWKLGAKGITVYRDGSRDLQVLATSKQDDDAPKE 741

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTE 949
             +     +      PS     T+
Sbjct: 742 PELPAEEPTVPVYERPSRLIGHTD 765



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 36/195 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHF 351
           F+     I+  +Y            +    RVA  +A  E  E+E     FY L++   F
Sbjct: 5   FDEHAQAIVRRQYAQPGED----SVEDVLRRVAREIARPEGPEREVWEERFYELMAEKRF 60

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTT----VPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
           +     L  +GT H  L +C +          L G+    ++ A++ K  GG G +   +
Sbjct: 61  LPGGRILAGAGTGHGNLLNCHVQGALEHPEGSLEGVMEIARKLALVTKVGGGNGVNLDAL 120

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                   G        + F++                          H DV  F+    
Sbjct: 121 PPA---RRGVQVIFPDPVAFMR------------------------ADHPDVRSFIRGDY 153

Query: 468 NTGDDRRRTHDMNTA 482
              D  R    +   
Sbjct: 154 PPTDPARPDRGVFAG 168


>gi|239831934|ref|ZP_04680263.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
 gi|239824201|gb|EEQ95769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
          Length = 1265

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/576 (22%), Positives = 221/576 (38%), Gaps = 93/576 (16%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL--- 463
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++   
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 464 ---------------------------DLRKNTGDDRRRTHDMNTA-------------- 482
                                       +    G +  R    + A              
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEAGSEATRDDCFDPAKNPALKREIRAAKK 360

Query: 483 NWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYEN 524
           N +P+ ++KRV Q       +  +  +  D  S+ +                EF  A EN
Sbjct: 361 NQVPENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVEN 420

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R + +V + + A  LW K+    + +  P + +    N        G + +S
Sbjct: 421 DGDWNLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRAS 480

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL SINLL +   +  FD      T R    VL+  + +   
Sbjct: 481 NPCSEYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQF 536

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             ++  + ++ +R +GLG       L    IPY S E   I       ++  A + S E+
Sbjct: 537 PSKEIARLSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEM 596

Query: 702 AQERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A+E G + S++                  G         ++ + L+AE   +  M   +R
Sbjct: 597 AKELGTFPSYEPNAQHMLRVIRNHRRAAHGETQGYEGLAVNPVALIAEDCPDQDMIVHAR 656

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  +
Sbjct: 657 AAWDKALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 716

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            +  V E  +   + E+ I++++ +    GNI + P
Sbjct: 717 INRAVPEALRTLGYSESQIAEIEAYAVGHGNINQAP 752



 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 795 FCKDVLKLTDEQLNDFSFEMLPALGFTRKEIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 854

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 855 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKDAYMLSWKLALK 914

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 915 ANALYRDGSK 924


>gi|83311845|ref|YP_422109.1| ribonucleotide-diphosphate reductase subunit alpha
           [Magnetospirillum magneticum AMB-1]
 gi|82946686|dbj|BAE51550.1| Ribonucleotide reductase [Magnetospirillum magneticum AMB-1]
          Length = 1245

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/598 (20%), Positives = 215/598 (35%), Gaps = 91/598 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGND 403
           S   F         S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +
Sbjct: 197 SYVDFKTGKLVRSKSAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTN 256

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 257 FSRLRGEGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKF 315

Query: 463 LDLR--------------------------------------KNTGDDRRRTHDMNTANW 484
           +  +                                      +       R      A  
Sbjct: 316 ISWKVREEQKVAALVAGSRLAARHLTEVMAACREWDGQDGEARFDPKINTRLKKAIIAGR 375

Query: 485 ---IPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IA 521
              IP+ +++RV Q A        + +   D  S+ +     +               + 
Sbjct: 376 KSEIPENYIQRVIQFARQGYTQIDFPVLDTDWDSEAYLTVSGQNSNNSVRVDNGFLNAVL 435

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           ++       R   K  + + A  LW ++    +    P I F    N        G +++
Sbjct: 436 HDADWNLKHRNSAKAAKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINA 495

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        +   CNL S+NLL     +  FD D      R    VL+  + +  
Sbjct: 496 SNPCSEYMFL----DDTACNLASLNLLCFRNEDGSFDVDGFRHACRLWTMVLEISVLMAQ 551

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               K  + ++  R +GLG       L    IPY S +   +       ++  A + S +
Sbjct: 552 FPSPKIAELSYEFRTLGLGYANVGGLLMASGIPYDSDKGRALTGAITALMTGEAYATSAD 611

Query: 701 LAQERGAYSSFKGSLWDQ------------------GVFPIDSIGLLAEVRDELAMNRTS 742
           +A+E GA+  F+ +                          +  + L A    +  +   S
Sbjct: 612 MAEELGAFEGFEKNRAAMMRVIRNHRRAAHGMGTGFEGLSVTPVPLDAANCPDAPLLAAS 671

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV 801
           R  WDE   + +  G RN+    +APT TI  +    +  I+P +  +  K    G +  
Sbjct: 672 RQAWDEALAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 731

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
           + + +V E  +   ++E  I+++  +    G++   P  +   + A  F+   +  IE
Sbjct: 732 IINRMVPEALRTLGYNEGDIAEIIRYAVGHGSLRGAPHVNHDTLKAKGFDDAMLDKIE 789



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEID 852
           + +  + L       E + +   Y  G  ++     + D+   +   A          + 
Sbjct: 824 DDYTFDMLAWLGFTREQIDAANTYVTGAMTLEGAPFLKDEHLPVFDCASPCGRVGKRYLS 883

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K    Y   S+ + 
Sbjct: 884 VDSHIRMMAAAQPFISGAISKTINMANNATVEDCKNAYMLSWRLGIKANALYRDGSKLSQ 943

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            ++ S L+      + +      S T  + 
Sbjct: 944 PLQASLLEDAGELADELADASATSRTEIVA 973


>gi|153009461|ref|YP_001370676.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561349|gb|ABS14847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1263

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/572 (22%), Positives = 219/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +     ++
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  M   +R  WD
Sbjct: 597 GTFPSYEPNAEHMLRVIRNHRLAAHGETEGYEGLAVNPVALIAEDCPDQDMITHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GNI + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNINQAP 748



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPALGFAKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|218663033|ref|ZP_03518963.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 427

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 192/462 (41%), Gaps = 63/462 (13%)

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               +PD+  +    N    LFSP +V  ++ +   E  +  E Y        I   +KI
Sbjct: 1   LGVVVPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVADARISK-KKI 58

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET--- 597
           +A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + E    
Sbjct: 59  NAREFFQVLAEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVSEASEYDDD 116

Query: 598 ---------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAK 647
                      CNLGS+N+ A       D      TI T++R L  V D++   ++   +
Sbjct: 117 LSYKHLGKDISCNLGSLNIAA-----AMDSADFGKTIETSIRALTAVSDMSHIASVPSIE 171

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K N    AIGLG M     L    I Y S E V+  +     +++HAI AS  LA ERG 
Sbjct: 172 KGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGT 231

Query: 708 -YSSFKGSLWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKKRVKTIGM 758
            +  F+ S +  G +         +        + D+  ++  ++  W  LK  V T G+
Sbjct: 232 SFKGFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQDDWASLKTAVMTSGL 291

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
            N N  A+ PT +I+ I   + SI P    + ++                         E
Sbjct: 292 YNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK------------------------E 327

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
             I  + Y          + +D    +  A+EI    +I++ +   + +DQ  SL L+  
Sbjct: 328 GKIGRVYYPA------PFMTNDNLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFR 381

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           D  + + ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 382 DTATTRDINKAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 422


>gi|218128620|ref|ZP_03457424.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
 gi|217989222|gb|EEC55536.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
          Length = 587

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 138/641 (21%), Positives = 251/641 (39%), Gaps = 110/641 (17%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  +D  Y  +     R F  + L  ++  ++Y +  + G+  E  P+    R+A 
Sbjct: 1   MEKKIYSYDEAYEESL----RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIAN 56

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVP---D 378
            +A  E +      + E + L + F ++    S  T   +  +   LS+CF+  V    D
Sbjct: 57  EVARIEAKYPNALSSEELFGLFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               IF   +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V
Sbjct: 117 SYGAIFKVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREV 176

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R+GA+   +   H D E F+D +   G    +    N +  + D FM+       
Sbjct: 177 AQDG-RRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P + +D                            ++I+A  LW+K++   +++  
Sbjct: 232 YVQQYPIDATD------------------------PVFKKEINATDLWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHV----GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
           P + F D     S             S+N C EI L         C L +INL ++  N 
Sbjct: 268 PGVLFWDTILKESVPDCYADLGYRTVSTNPCGEIPLCPYDS----CRLLAINLYSYVVNP 323

Query: 614 ----NQFDYDKLASTIRTAVRVLDNVIDINCHTIE------------------------K 645
                 FD+D     +  A R++D++ID+    IE                        K
Sbjct: 324 FKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMAKIDADPESEDVKHTESVLWQK 383

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K +   R  G+G+      L  L + Y + EA E A++  + ++  A  +SV +A+ER
Sbjct: 384 IYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKER 443

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +         F    I  L E                EL + +K  G RN  C+ 
Sbjct: 444 GAFEVYDSEREKNNPF----INRLREADP-------------ELYEEMKKYGRRNIACLT 486

Query: 766 IAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRD---------- 814
           IAPT T + +   +  I+P +  +Y  +  ++ + + V+   V+E               
Sbjct: 487 IAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKF 546

Query: 815 -LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             W EA   D      +   I+ + +      AT+ ++D +
Sbjct: 547 VTWMEAEGYD-PAKRYTQEEIDALVEKSPYYKATSNDVDWL 586


>gi|307565852|ref|ZP_07628313.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
 gi|307345476|gb|EFN90852.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
          Length = 866

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 137/675 (20%), Positives = 257/675 (38%), Gaps = 102/675 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
             L + L Y   F  + +  ++  D Y L  + G+  E  P+    R+A  +A  E    
Sbjct: 11  EALESALNY---FGNDEVAAKVWIDNYALKDSLGNLYEKSPEDMHWRIANEVARIEKRYV 67

Query: 337 K--RAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ--- 388
               A + + LL  F ++    S+     +      L++CF+    +D++     +    
Sbjct: 68  NPINAAKVFELLDHFRYIVPSGSSMVGIGNKYLLSSLANCFVIGSAEDVHSYGTIMHIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K SG +G+D + +R  G+ I  +   S G++PF++   ++   V QGG   GA+
Sbjct: 128 EQVQLMKCSGIVGHDLSYIRPKGSSIKDSKLISTGILPFMERYFNSMREVVQGGH-SGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H DVE  +D+      D       N +  I D FMK V     +    P    
Sbjct: 187 MLSVNIKHPDVESLIDVNIKKAKDNS----ANISVKITDEFMKAVINEESYIQQFP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                   +    ++I A  L+ K+L   +    P + F D   
Sbjct: 239 --------------------IISTKPIFTKEIYAKHLFEKILYKAYHDAEPTVLFWDNIL 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLAS 623
             S       +    +               C+L S+NL ++  +      +FD+DK A 
Sbjct: 279 KDSLSDSYADLGFQTISITPYYKIPLSPYDSCHLLSLNLYSYVIDPFTKEARFDFDKFAE 338

Query: 624 TIRTAVRVLDNVID------------------------INCHTIEKAKKSNHTHRAIGLG 659
            ++ A RVLD+++D                           +  +K K+ +   R IG+G
Sbjct: 339 HVQIAQRVLDDIVDLELEKIDLILSNIEKASVSKEIKETEYNLWKKIKEKSAMGRRIGIG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +         + + Y + E+++ + +  + ++ +A  +SV +A+ERG+++ +  S     
Sbjct: 399 VTAEGDMFAAMGLCYGTQESIDFSVKVHKVMALNAYRSSVNMAKERGSFAIYDASREKNN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F                + R  R   ++L   ++  G RN +C+AIA   T++ +   +
Sbjct: 459 PF----------------ILRLKRED-EQLFNDMERYGRRNISCLAIASIKTVSLMTQTT 501

Query: 780 QSIDPSYQNLYV---KSNMSGDFTVVNSFLVNEL----KQRDLWDEAMISDLKYH----- 827
             I+P Y  +Y    K N     T  N+ L  EL    ++  ++    ++ +K +     
Sbjct: 502 SGIEPKYIPVYKHHDKINSYNKNTNANTDLAYELDNSFREHIIYHSKFLTWMKVNGIEPT 561

Query: 828 -DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-L 885
              S   I+ +         TA       +I      +KW DQ+ S+ +       +  +
Sbjct: 562 KKYSQEEIDDLIKRSPYYMTTANYESLSMIIHMQGAIEKWTDQSVSVTINTPSSIDEDSI 621

Query: 886 DFIYRQAWLMGLKTT 900
             +Y +AW  G K  
Sbjct: 622 SKLYFEAWRCGCKGC 636


>gi|256044701|ref|ZP_05447605.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1264

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFELLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|254465729|ref|ZP_05079140.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
 gi|206686637|gb|EDZ47119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
          Length = 1214

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 157/753 (20%), Positives = 261/753 (34%), Gaps = 132/753 (17%)

Query: 207 RTLIEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI-EEGV 264
              IE   ++++V +  + +K  R+  + +  KK ++          PE+  R + EEG 
Sbjct: 38  LDNIEIPASWSQVASDVIAQKYFRKAGVPSRLKKVREKG-------VPEFLWRSVPEEG- 89

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQ 318
            A    E+        LA    Y   +   Y       +  YD  RY L    S    PQ
Sbjct: 90  -AETGGETSSKQVFDRLAGAWAYW-GWKGGYFSSEEDARAYYDEMRYMLATQRSAPNSPQ 147

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F      GL              Y       +     T  +S   HPQ  +CF+ +V D
Sbjct: 148 WFN----TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSDSAYEHPQPHACFIQSVSD 198

Query: 379 DLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           DL    GI       A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A
Sbjct: 199 DLVKDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEPLS-GGGKSSGLMGFLKIGDRAA 257

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--------------------- 473
            A+  G   R+ A    ++  H D+E+F+  +                            
Sbjct: 258 GAIKSGGTTRRAAKMVIVDADHPDIEDFIQWKVIEEQKVASIVAGSKMHEKMLNGLFEAI 317

Query: 474 -------------------RRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEV 507
                              ++         IP+ ++KRV   A        +  +  D  
Sbjct: 318 RSWDGGEADAYDPAVNSALKKAIREAKKVAIPETYIKRVLDYAKQGHTAIEFPTYDTDWD 377

Query: 508 SDLHDLYGK-----------EFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLTMLF 554
           S+ +                 F  A E        +R + KV + + A  LW K+    +
Sbjct: 378 SEAYSSVSGQNSNNSIRVTNAFLHAVEKNADWELINRTDGKVAKVVKARDLWEKVGHAAW 437

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
               P I F D  N        G +  SN C+E        +   CNL S+NLL+     
Sbjct: 438 ACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASLNLLSFLKEG 493

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            F  D+   + R     L+  + +     ++  + ++  R +GLG       L  +   Y
Sbjct: 494 LFQADEFMHSCRLWTLTLEISVMMAQFPSKEIAQRSYDFRTLGLGYANIGGLLMNMGYSY 553

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------------------KGSLW 716
            S E   +       ++  A + S E+A E GA+  +                  KG+  
Sbjct: 554 DSDEGRALCGALTALMTGVAYATSAEIAAELGAFPGYAKNADHMLRVIRNHRNAAKGNAD 613

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                 +  + L      +  +   +   WDE  +  +  G RN+    IAPT TI  + 
Sbjct: 614 GYEALSVKPVPLDIASCPDALLTDLAASAWDEALELGEKHGYRNAQTTVIAPTGTIGLVM 673

Query: 777 GV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIG 832
              +  I+P +  +  K    G +  + +  V    +   +  A I ++  +    GSIG
Sbjct: 674 DCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALEGLGYSSAQIEEIVSYAVGHGSIG 733

Query: 833 NIERI-----------PDDLKKIHA---TAFEI 851
           N   I           P++L K+ A    AF+I
Sbjct: 734 NAPAINHTSLAGHGFGPNELAKVDAALEAAFDI 766



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 13/153 (8%)

Query: 800 TVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-- 855
             +N    + L+      + +   +D      ++     + ++   I   A         
Sbjct: 789 PKLNDPTFDLLRHLGFTKKDIDAANDHVCGTMTLEGAPHLKEEHYAIFDCANPCGKKGKR 848

Query: 856 ------LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
                  I   +  Q +I  A S  + +    + +     Y  +W +G+K    Y   S+
Sbjct: 849 FLSVDSHIYMMAAAQSFISGAISKTINMPNSATIEDCQKAYELSWSLGIKANALYRDGSK 908

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  +  + ++  D     +     +     L 
Sbjct: 909 LSQPLAAALVEDDDDAAEVLESGSNHEKAAVLA 941


>gi|225852546|ref|YP_002732779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256113594|ref|ZP_05454414.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|225640911|gb|ACO00825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis ATCC 23457]
          Length = 1264

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|17987226|ref|NP_539860.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|260564046|ref|ZP_05834532.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|265991125|ref|ZP_06103682.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17982898|gb|AAL52124.1| vitamin b12-dependent ribonucleotide reductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154062|gb|EEW89154.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|263001909|gb|EEZ14484.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1261

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFELLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|265994961|ref|ZP_06107518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|265999463|ref|ZP_05466495.2| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|262766074|gb|EEZ11863.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263094108|gb|EEZ18030.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409064|gb|ADZ66129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326538771|gb|ADZ86986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis M5-90]
          Length = 1261

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254719117|ref|ZP_05180928.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306838401|ref|ZP_07471246.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
 gi|306406541|gb|EFM62775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
          Length = 1264

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|254716817|ref|ZP_05178628.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261218618|ref|ZP_05932899.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261321884|ref|ZP_05961081.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|260923707|gb|EEX90275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261294574|gb|EEX98070.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1264

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|265984108|ref|ZP_06096843.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264662700|gb|EEZ32961.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 1261

 Score =  300 bits (769), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254714125|ref|ZP_05175936.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1261

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|23501921|ref|NP_698048.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|256369467|ref|YP_003106975.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|23347864|gb|AAN29963.1| ribonucleotide reductase domain protein [Brucella suis 1330]
 gi|255999627|gb|ACU48026.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
          Length = 1264

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|254704332|ref|ZP_05166160.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706767|ref|ZP_05168595.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|256061132|ref|ZP_05451286.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|260566419|ref|ZP_05836889.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261314231|ref|ZP_05953428.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261325135|ref|ZP_05964332.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261755004|ref|ZP_05998713.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|260155937|gb|EEW91017.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261301115|gb|EEY04612.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261303257|gb|EEY06754.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261744757|gb|EEY32683.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
          Length = 1261

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|161618992|ref|YP_001592879.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|161335803|gb|ABX62108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella canis ATCC 23365]
          Length = 1264

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDCDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|148560410|ref|YP_001258980.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|148371667|gb|ABQ61646.1| B12-dependent ribonucleoside diphosphate reductase [Brucella ovis
           ATCC 25840]
          Length = 1264

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANLCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|62289965|ref|YP_221758.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|82699892|ref|YP_414466.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|189024207|ref|YP_001934975.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237815468|ref|ZP_04594466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|254730305|ref|ZP_05188883.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260545287|ref|ZP_05821028.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260754779|ref|ZP_05867127.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260758002|ref|ZP_05870350.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260761825|ref|ZP_05874168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883797|ref|ZP_05895411.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297248364|ref|ZP_06932082.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
 gi|62196097|gb|AAX74397.1| ribonucleotide reductase domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615993|emb|CAJ11019.1| Ribonucleotide reductase large subunit [Brucella melitensis biovar
           Abortus 2308]
 gi|189019779|gb|ACD72501.1| Ribonucleotide reductase large subunit [Brucella abortus S19]
 gi|237790305|gb|EEP64515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|260096694|gb|EEW80569.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260668320|gb|EEX55260.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260672257|gb|EEX59078.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674887|gb|EEX61708.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260873325|gb|EEX80394.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297175533|gb|EFH34880.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
          Length = 1260

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|254710126|ref|ZP_05171937.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|256031621|ref|ZP_05445235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261317676|ref|ZP_05956873.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|265988710|ref|ZP_06101267.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261296899|gb|EEY00396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|264660907|gb|EEZ31168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 1261

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254689271|ref|ZP_05152525.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254697407|ref|ZP_05159235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|256257521|ref|ZP_05463057.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
          Length = 1257

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|294852367|ref|ZP_06793040.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
 gi|294820956|gb|EFG37955.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
          Length = 1261

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254693756|ref|ZP_05155584.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214030|ref|ZP_05928311.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260915637|gb|EEX82498.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
          Length = 1261

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADKDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|306840527|ref|ZP_07473286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
 gi|306289542|gb|EFM60760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
          Length = 1264

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDVAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIVHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|306843914|ref|ZP_07476509.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
 gi|306275669|gb|EFM57393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
          Length = 1260

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254701790|ref|ZP_05163618.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261752346|ref|ZP_05996055.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261742099|gb|EEY30025.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 1261

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|163843310|ref|YP_001627714.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163674033|gb|ABY38144.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella suis ATCC 23445]
          Length = 1267

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMRACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|256159759|ref|ZP_05457506.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1264

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|256255021|ref|ZP_05460557.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|261222211|ref|ZP_05936492.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265998175|ref|ZP_06110732.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260920795|gb|EEX87448.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262552643|gb|EEZ08633.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1261

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|284165414|ref|YP_003403693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
 gi|284015069|gb|ADB61020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
          Length = 1042

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/671 (21%), Positives = 247/671 (36%), Gaps = 119/671 (17%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A EF  ++ +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 EDVAEEFQGMMENLDFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWQLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFLD-----------LRKNTGDDRRR----------------------------- 475
           H DV +F+            LR N  DD                                
Sbjct: 262 HPDVIQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALDEARELIDDEGKVPKHLRNAVE 321

Query: 476 --THDMNTANWIPDLFMKRVTQNAGWTLFSPD---------EVSDLHDLYGKEFEIAYEN 524
               + N +  I D FM+ +     +T  +P          E  +L+D++G         
Sbjct: 322 GHLSNFNISVGITDDFMEALQNGEEFTFTNPRTGEPHIATAETKELYDMFG--------- 372

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                D  E+     I A  LW  ++    E G P + + +  N +             L
Sbjct: 373 ---LGDYVEVGEELSIPAEELWDDIVEGAHENGEPGVIYLERVNKQHSFDVEKHPDHRIL 429

Query: 585 CTEITLNSSSEETAVCNLGSINL----------------------------LAHFANNQF 616
            T        EE   CNLG INL                            +  F     
Sbjct: 430 ATNPCGEQPLEEYEACNLGHINLSTLADLEAPDWRVWYDEHGEEYDSLEDAVDAFLEEAI 489

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++    I    R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S
Sbjct: 490 DFEEFDRRIEMGTRFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGMEYGS 549

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             + E+A + M  I+  +  AS ELA+ERG++  +  S +              E R+  
Sbjct: 550 ETSNEVARQLMRHINHGSKWASHELAEERGSFDEWDNSKYANPT----------EYREWF 599

Query: 737 AMNRTSRLP-WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W++         +RN N   IAPT T + +   +   +P Y   Y K+  
Sbjct: 600 EKQTGLDADEWED------GFSIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVS 653

Query: 796 S---GDFTVV--NSFLVNELKQRDLWDEAMISDLKYHDGSIG-----NIERIPDDLKKIH 845
               GD  +V  + + +  L+  D+  +A+  + +    +        +  +PD + ++ 
Sbjct: 654 DDVQGDEMLVEFDDYFLRVLEDNDIDVDAVKEEAQEQMATNQFNGVEGLSTVPDAIGELF 713

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLR 904
            T  ++            Q+ +D A S  +     S  +    ++   +  G K   Y R
Sbjct: 714 VTTGDLSAKEHAGVQVACQQGVDSAISKTVNAPNDSTLEDAKDVFEYIYEHGGKGVTYYR 773

Query: 905 SRSATSVEKST 915
             + +    +T
Sbjct: 774 DGTRSKQVLTT 784


>gi|260888488|ref|ZP_05899751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|330838203|ref|YP_004412783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|260861685|gb|EEX76185.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|329745967|gb|AEB99323.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
          Length = 749

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 147/653 (22%), Positives = 259/653 (39%), Gaps = 98/653 (15%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
             +G  IL  +Y+   +    E P  F  RVA G+   E  ++ RA      L       
Sbjct: 7   TEIGRSILQAKYY---HAGETE-PHEFIERVA-GIFSPEVREKMRA-----YLEDGALSP 56

Query: 354 STPTLFNSGTR---HPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  TL+ +G +      LS+C++   P DD+  IF   Q+ A +  Y GG+G + + +R 
Sbjct: 57  AGRTLYAAGAKGKFKSSLSNCYIMPSPTDDIESIFTVNQQIAKIFSYGGGIGVNISGLRP 116

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + ++     S G + FLK+ N T   ++Q G R+GA+   L++ H D+ EFL +++  
Sbjct: 117 KDSRVNNVARSSTGAVSFLKIFNTTGEVISQNG-RRGAMLVALDSEHPDIYEFLHMKQ-- 173

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             +  +   MN +    D FM+ V  +A + L    E +                     
Sbjct: 174 --ENEKLASMNLSILFSDAFMQAVIDDAEYELTFDVEATG-------------------- 211

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--VVHSSNLCTE 587
                K+ R I A   + +     ++ G P   FKD  N  +         +  +N C E
Sbjct: 212 ----EKIRRTIRAAEFFDEYCQTQWDWGDPGALFKDRLNDYTLLSGYDEYKIEVTNPCGE 267

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCH- 641
              N+ +     CNL S+NL +   +   D      ++  + I+TAVR LD V+D     
Sbjct: 268 FGGNAYNS----CNLMSLNLYSFIEDKFGDAPHIAEEEFRAAIQTAVRALDEVLDYGFDT 323

Query: 642 -TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ ++     R++GLGL G   A   + + Y S E+ +     +  +   A   S  
Sbjct: 324 QPLEENRQCIRDWRSVGLGLFGVADAFVAMKLAYGSRESCDFIQGVLRTMFTEAARTSAA 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GA+  +      +       I  LAE   E+                +K  G+RN
Sbjct: 384 LAKEKGAFGKYDWEKTKKSPL----IQRLAEEAPEVY-------------AEIKEYGLRN 426

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDF----TVVNSFLVNELKQRDL 815
              ++IAPT TI+ + GV S   +P YQ  Y ++    +       V +  V++L     
Sbjct: 427 GTLLSIAPTGTISLLMGVFSGGCEPLYQISYERTTHKMEEGSGSFRVYAHSVSDLLDYHK 486

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHA---TAFEIDPMWLIESASRRQKWIDQAQS 872
               + +                +D+KK       + ++  +  +E  +  QK++D + S
Sbjct: 487 LPHDLTN----------------EDIKKRFPWVIESHDVPYLHRVELQAAMQKYVDNSIS 530

Query: 873 LNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
             +      +   +  IY  AW    K     R            +  + ++ 
Sbjct: 531 STVNLKHAATPADIRNIYLAAWKSRCKGITVFRDGCKRGNILGVKEAAEQEIA 583


>gi|225627518|ref|ZP_03785555.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
 gi|225617523|gb|EEH14568.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
          Length = 1264

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 182 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 241

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 242 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 300

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 301 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 360

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 361 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 420

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 421 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 480

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 481 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 537 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 596

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 597 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWD 656

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 657 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 716

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 717 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 748



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 911 ANALYRDGSK 920


>gi|260168749|ref|ZP_05755560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261758230|ref|ZP_06001939.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
 gi|261738214|gb|EEY26210.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
          Length = 1261

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 218/572 (38%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +      +
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSRE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  +   +R  WD
Sbjct: 594 GTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GN+ + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|254469591|ref|ZP_05082996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
 gi|211961426|gb|EEA96621.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
          Length = 1223

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 135/632 (21%), Positives = 225/632 (35%), Gaps = 100/632 (15%)

Query: 294 EYLGLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
                Q  YD  RY L         PQ F      GL              Y       F
Sbjct: 129 SEADAQAFYDELRYMLATQKVAPNSPQWFN----TGLHWAYGIDGPSQGHHY-----VDF 179

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVR 408
                T   +   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R
Sbjct: 180 ETGKLTRSATAYEHPQPHACFIQSVDDDLVNENGIMDLWVREARLFKYGSGTGTNFSSLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
             G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF+  + 
Sbjct: 240 ASGERL-AGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEFVTWKV 298

Query: 468 NT-------------------------------GDD---------RRRTHDMNTANWIPD 487
           +                                GDD          +R         +P+
Sbjct: 299 HEEQKVAAIVTGSKVCQKHLQAVMKACVNCEGSGDDCFDPKKNPALKREMRAAKKAMVPE 358

Query: 488 LFMKRVTQNA-------GWTLFSPDEVSDLH-DLYGKE----------FEIAYENYERQA 529
            +++RV Q A        +  ++ D  S+ +  + G+           F  A        
Sbjct: 359 NYIQRVVQFARQGYKTIEFPTYNTDWDSEAYLTVSGQNSNNSVRVTDGFLKAVTADGEWD 418

Query: 530 DRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             G I     + I A  LW ++    + +  P + +    N        G + +SN C+E
Sbjct: 419 LIGRIDGETKKTIKAAELWEQIGYAAWASADPGLQYHTTINEWHTCPQGGEIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   +   CNL S+NLL     + QFD+DK     R    VL+  + +     ++ 
Sbjct: 479 YMFL----DDTACNLASLNLLQFRQDDGQFDFDKFEHATRLWQIVLEISVMMAQFPSKQI 534

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R  GLG       L    I Y S E   +       ++    + S E+A E G
Sbjct: 535 AELSYEYRTTGLGYANIGGLLMTSGIAYDSDEGRALCGAITAIMTGVCYATSAEMAGELG 594

Query: 707 AYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+  ++ +  D                          + L A    +  +   +RL WD+
Sbjct: 595 AFPRYEENAKDMLRVIRNHRRAAHSDTQGYEKLSTLPVPLDAANCPQADLVERARLAWDK 654

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 655 ALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 714

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + EA I +++ +    G+I + P 
Sbjct: 715 PEALRALGYSEAEIGEIEAYAVGHGSIAQAPA 746



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
            I+  +  Q +I  A S  + + +  S +     Y  +W +GLK    Y   S+
Sbjct: 864 HIKMMAAAQPFISGAISKTINMANTASVEDCKDAYMLSWKLGLKANALYRDGSK 917


>gi|269838377|ref|YP_003320605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787640|gb|ACZ39783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
          Length = 1139

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 208/575 (36%), Gaps = 59/575 (10%)

Query: 288 ERDF--AFEYLG----LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            RD+   + Y       Q   D  +Y L    +    PQ F     +  A   T   +  
Sbjct: 122 WRDWGERYGYFASEEDAQAFEDELKYMLVHQMAAPNSPQWFNTG--LYYAYGITGPAQGH 179

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKY 396
                  S                  P   +CF+ +V DDL    GIF  +   A + KY
Sbjct: 180 -------SYIDPDTGELKYSQDAYSRPTPHACFIQSVEDDLVNPGGIFDLVTREARVFKY 232

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETW 455
             G G +++ +R  G  +    G S G++ FLK+ +  A A+  G   R+ A    ++  
Sbjct: 233 GSGSGTNFSKIRAEGEPLS-GGGTSSGLMSFLKIFDRAAGAIKSGGTTRRAAKMVVVDVD 291

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           H D+E F++ +               +  +  + +     QN+  ++   DE        
Sbjct: 292 HPDIEAFINWKAEEEKKVAALIAAGYSADFNGEAYATVSGQNSNNSVRVTDEFIRAVLTD 351

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+              R + ++ + + A  LW ++    ++   P + F    N      
Sbjct: 352 GE---------WHLRWRTDGRIAKTVRARDLWHQIAQAAWQCADPGVQFDTTINAWHTCP 402

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVL 632
             G +++SN C+E        +   CNL S+NL+  +      FD ++    +R    VL
Sbjct: 403 ASGRINASNPCSEYMFL----DDTACNLASLNLMKFYDAERRTFDIERFRHAVRLWTIVL 458

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +  + +     E   + ++  R +GLG     S L  + +PY S  A  IA      ++ 
Sbjct: 459 EISVLMAQFPSEAIARKSYEFRTLGLGYANLGSMLMTMGLPYDSDRARGIAAAVTAIMTG 518

Query: 693 HAISASVELAQERGAYSSFKGSLWD-------------------QGVFPIDSIGLLAEVR 733
            A +AS E+A   G + +F  +                           +  +GL     
Sbjct: 519 EAYAASAEMASVLGPFPAFAENREHMLRVIRNHRRAAYNAHPGEYEGLSVAPVGLDPATC 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVK 792
            E  + + +R  WD      +  G RN+    +APT TI  +    +  ++P +  +  K
Sbjct: 579 PE-DLVQAAREAWDRALAMGEQYGYRNAQTTLLAPTGTIGLLMDCDTTGVEPDFALVKFK 637

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
               G +  + +  +    +   + E  I D+  +
Sbjct: 638 KLAGGGYFKIANQSIAPALRTLGYTEEQIEDILRY 672



 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 807 VNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFE--------IDPMWL 856
            N L++     + +   +D+     +I     + D+   +   A +        I  M  
Sbjct: 742 FNLLRELGFTPQQIAEANDVICGMQTIEGAPHLKDEHLPVFDCANKCGKHGRRFIHHMGH 801

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I   +  Q ++  A S  + + +E + + ++  Y  +W +GLK     R  S  S   S+
Sbjct: 802 IRMMAAVQPFLSGAISKTINMPNEVTVEDIEEAYMASWRLGLKAMALYRDGSKLSQPLSS 861

Query: 916 LKGVDG 921
               D 
Sbjct: 862 ASKQDQ 867


>gi|167589131|ref|ZP_02381519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ubonensis Bu]
          Length = 594

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 138/630 (21%), Positives = 233/630 (36%), Gaps = 84/630 (13%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMC 353
           L   +L DRY      +R     A F RVA  LAL E    + +    FY  +       
Sbjct: 6   LSAAVLADRYARAGETTRA----AIFRRVAHALALAEPMTSRARVEQLFYRNMQRGAI-G 60

Query: 354 STPTLFNSGT-RHPQLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +   + N+GT     + +CF+  V              +  AL E  +     GG+G D+
Sbjct: 61  AGRIMANAGTGAEGTMVNCFVHPVAMPGVASLAAVHAALAQALDEARITLLMGGGVGYDF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           +P+    A+          V   +   +    A+   G R+GA  A L   H D+ EF++
Sbjct: 121 SPLPPATAYERRGADTP-DVCAAIDRFDIVCRALPYAGPRRGAQMAVLRCDHPDIIEFVE 179

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +      RRR    + A  + D FM+ V  N  WTL                       
Sbjct: 180 AKHG----RRRWPTFSLAVGVTDAFMEAVAGNLPWTLRH-------------RVPPCSPA 222

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             + A       +  + A ALW  ++    ++  P + F D  +     +    + +++ 
Sbjct: 223 CTQTALPDGSWTYATVPARALWHVIVNEARDSSEPRLLFLDTIDAADSLRAHERIDATDP 282

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNVID 637
           C+E  L +         LG I+L               FD+   A  +R  VR+LDN ID
Sbjct: 283 CSEQPLPAYGSSV----LGPIDLSRFVRHPFGVDGKPNFDFTGFADAVRVQVRMLDNAID 338

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    +    +  H  R IG+G+ G   AL +L + Y    A  +A E    +  HA SA
Sbjct: 339 LTVWPLAAHAREAHEKRRIGVGVTGLADALTMLRLRYDCGAARMVAREIALTMRHHAFSA 398

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA ERG + ++  + +  G      + +                    +++ +   G
Sbjct: 399 SASLAAERGVFPAYDAADYLDGAAHRAPLPVT-------------------VRETIARHG 439

Query: 758 MRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ M+ AP  +++   G   S  I+P+   +  +   +GD   +++        R  
Sbjct: 440 LRNSHLMSFAPAGSVSVAFGDNCSHGIEPAIDWVERREVRTGDN-HLHAIRAENHAYRLF 498

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                           G    +PD        A +I P   +   +  Q  +D A S  +
Sbjct: 499 RQL------------HGEHAPLPD----YFVKAADIAPADHVSMLAALQPCVDAAISKTV 542

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +D   S  ++D ++  AW   LK+    R
Sbjct: 543 NVDRRCSLAQIDALFFAAWRERLKSIRIFR 572


>gi|162448649|ref|YP_001611016.1| putative ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
 gi|161159231|emb|CAN90536.1| putative Ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
          Length = 1134

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 122/630 (19%), Positives = 234/630 (37%), Gaps = 53/630 (8%)

Query: 216 YAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLY------PEYFCRYIEEGVKARL 268
           ++++    ++ K  R+  +    +  + +    +  L        E+F      G  A  
Sbjct: 107 WSQLATDIVVSKYFRKAGIHGKKELGETSVRQVVHRLARTIREAGEHFG-----GYFASA 161

Query: 269 LHESMMDFDLVYLANDLKYERD----FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                 + +L YL        +    F         LY RY +  +G             
Sbjct: 162 KDADTFEAELAYLLVHQYGAFNSPVWFNCG------LYHRYGIEGSGGNY---------- 205

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           A   A  +        +     ++            +    PQ S+CF+  V DDL  I+
Sbjct: 206 AWNEASADAGNGSANGKASAPRTNGAGAVDDIVETRNAYERPQCSACFIQAVQDDLMSIY 265

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
             ++  A L KY  G G +++ +RG    +    G S G++ FL+V +  A A   G   
Sbjct: 266 DLVKSEARLFKYGSGTGTNFSAIRGKQEKLS-GGGTSSGLMSFLEVFDRAAGATKSGGTT 324

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKRVTQNAGWTLF 502
           R+ A    L+  H ++ +F+  +                +++  + +     QN+  ++ 
Sbjct: 325 RRAAKMVCLDMDHPEIVDFIQWKVREEKKAMALIGAGYPSDFNGEAYHTVSGQNSNNSVR 384

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             DE        G  +E           R   +V   +SA  LWR++    +    P + 
Sbjct: 385 VSDEFMRAA-ATGAAWETRS--------RTTGEVVDTLSAKDLWRQIAEAAWGCADPGVQ 435

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKL 621
           +    N      +   +++SN C+E        + + CNL S+NL      +  FD +  
Sbjct: 436 YDTTINRWHTCPNTARINASNPCSEYMFL----DDSACNLASLNLTKFLREDGSFDIEGY 491

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +R      + ++D + +      K++H +R +GLG     + L L  IPY S +   
Sbjct: 492 RHAVRVFFVAQEILVDFSAYPTRGIAKNSHDYRPLGLGYANLGTLLMLQGIPYDSDQGRS 551

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAM 738
           +A      +  HA   S E+A  +G ++ F  +            D+   +   R   ++
Sbjct: 552 VAGALTAILCGHAYRVSAEMAAAKGPFAGFARNREPMLRVMGMHRDAAYAIDRDRCPESL 611

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
            R +   WDE  +  +  G RN+    +APT TI  +    +  I+P +  +  K    G
Sbjct: 612 WRAACADWDEAVRIGQEHGYRNAQATVLAPTGTIGLLMDCDTTGIEPDFSLVKFKKLAGG 671

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            +  + +  V E  +R  + EA + ++  +
Sbjct: 672 GYFKIVNQSVPEALRRLGYPEAEVQEIVAY 701



 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLY-LDEP 880
           ++     + ++   +   A          + PM  +   +  Q ++  A S  +   ++ 
Sbjct: 796 TVEGAPHLREEHYAVFDCANRCGKKGRRYLAPMAHVRMMAAAQPFLSGAISKTVNLPNDA 855

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE----KSTLKGVDGKLNAVPVTDP-NSST 935
           + +++  IY + W +GLK     R     S       S  K   GK +   V  P   + 
Sbjct: 856 TVEEVQRIYEEGWRLGLKAVALYRDGCKASQPLSSTSSDSKESKGKADKAEVPAPIVQAA 915

Query: 936 HSLGIPSSCT 945
            +L  P S +
Sbjct: 916 TALARPRSPS 925


>gi|323488918|ref|ZP_08094155.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323397310|gb|EGA90119.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 852

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 168/742 (22%), Positives = 274/742 (36%), Gaps = 137/742 (18%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  ET  EKR   F   Y  L    F+ +   L+ +G  
Sbjct: 122 VIEKPMEVFYEQIAKRNATGLASVETTPEKRQEWFEKFYQQLVGLKFIPAGRVLYGAGAD 181

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGD 471
           G + +L         V QGG R+GA    L  WH D+ EF+            L +NT D
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIAEFIISKMQNPRILRYLIENTQD 301

Query: 472 DRR------RTHDMNTANW-------------IPDL--FMKRVTQNAGWTLFSPDEVSDL 510
           +        +      +               IP +  F +++ ++A   L      S  
Sbjct: 302 ETIKKLAHDKLKFKALSAQEEAMYQGILNYRTIPGMGGFNEKIMRDAESKLRDGGTYSVH 361

Query: 511 HDLY--------------------GKEFEI---AYENYERQADRGEIKVFRKISAVALWR 547
           ++ +                      +FE+   A E+Y +       + ++++  V  W 
Sbjct: 362 NEEFLTGANISVTLTSDFMTAVENDADFELRFPAVESYSKDEMAVYNEKWQEVGDVREWE 421

Query: 548 KMLT-------------------MLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTE 587
           +M                         +  P I F D  N ++     G  V ++N C E
Sbjct: 422 RMGHGVRVYRTMKARELWNLINICATYSAEPGIFFIDNANEKTNAAAYGQKVVATNPCGE 481

Query: 588 ITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL ++NL   A       D++ L  T+R  VR+ DNVID   + +E+
Sbjct: 482 QPLAP----YSVCNLAAVNLAQFADPKTKTVDFESLKETVRVGVRMQDNVIDATPYFLEE 537

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R +GLG+MG    L      Y SPE  E+ DE  + I+  A   S +LA ER
Sbjct: 538 NQVQALGERRVGLGVMGLADLLIYCDREYGSPEGNELVDEIFKTIATAAYEVSTDLAAER 597

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++               +S    A +R         +   + +++ V   G+RNS+ + 
Sbjct: 598 GSFP----------FLVGNSDEETAALRKAFTETGFMQGMPEHVREAVLEKGIRNSHLLT 647

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GVS  ++P Y   Y +S   G F  V + +V+E  +             
Sbjct: 648 VAPTGSTGTMVGVSTGLEPYYSFTYYRSGRLGKFIEVKADIVSEYLK------------- 694

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                  N E   ++L K   T+ ++ P    +     Q+WID + S  +      + ++
Sbjct: 695 ------NNPEADEENLPKAFVTSMDLAPEAHADVQCIIQRWIDSSISKTVNAPRGYTVEQ 748

Query: 885 LDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--------- 933
           ++ +Y + +  G K  T Y   SR +  +   TLK  D         +            
Sbjct: 749 VEGVYERLYKGGAKGGTVYVDGSRDSQVL---TLKAEDNNFEEQQQQEDTGKRPIVLIDT 805

Query: 934 --STHSLGIPSSCTSDTECEVC 953
                S  +         C VC
Sbjct: 806 IQDLRSTNVTIGSEVGDTCPVC 827


>gi|10140983|ref|NP_065560.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
 gi|81984052|sp|O36411|RIR1_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|2338024|gb|AAC58108.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
          Length = 780

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 160/787 (20%), Positives = 286/787 (36%), Gaps = 100/787 (12%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYERDF 291
              ++ +  +    +    Y E F   +EE V   L   + M    +Y+   L  Y+   
Sbjct: 29  AGLLHHEEMEKKATKTVTEYIEKFADVLEENVLRFLQDNAEMLELCIYMYEQLPAYKAVK 88

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM--------------GLALKETEK- 335
           +   L  +  YD Y L   +GS  E     FMR+A                +     +K 
Sbjct: 89  SRGILSAKRFYDTYVLRTADGSCYESVSHCFMRIAAFCTVQVLTNSALKITILYLGRDKL 148

Query: 336 ---------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                        + F++ LS     C+TP + ++G R   L+SCFL             
Sbjct: 149 FKDLPCSPTMDLFIYFFSPLSHQLVCCATPIMRSAGLRDANLASCFLINPDLSTEKSTTT 208

Query: 387 --LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             LQE  ML     G+G + T        I    G     + F           N    R
Sbjct: 209 ALLQELTMLLSAKSGVGCNVTSFGVDEKCIQSCVGLINSQVEFF----------NDQNPR 258

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
             +V AY+E WH  ++EFL ++    ++  R   +     IP LF ++  ++    W LF
Sbjct: 259 PVSVAAYMEVWHSQIQEFLAVKLP--ENPSRCASIYQGLCIPKLFFEKFIEDPGQNWYLF 316

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P++  +L +LYG EF      YER    G       I   +L   ++  + +TG P+I 
Sbjct: 317 KPEKSGNLANLYGDEFRS---EYERLV--GIGCYADAIPIKSLMFLIINTIIKTGSPYII 371

Query: 563 FKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK- 620
           +K+ CN    +   G  + S+NLC E+     ++  + CNL ++ L         D    
Sbjct: 372 YKEACNEHHWKNMEGCAIASANLCAEVIQYPGAD-VSTCNLANVCLPMCLVTVSNDSHSP 430

Query: 621 ------------------------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
                                   L + +  AV +++  I          ++     R++
Sbjct: 431 LEKTYCGNVIESQAVSGVGFSMPILHAAVEVAVFLVNCAIAGGKCVTPGMERG-QRERSM 489

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE--RGAYSSFKGS 714
           G+G+ G       +   Y    A  +  E  E + F A+  S  + +      +  +  S
Sbjct: 490 GIGVHGLADVFAEMGYSYLDERAARLDVEIFENMYFRAVKTSNNICRLGGGRPFEGWGES 549

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
               G F            +++ ++      W++L +R  + G+ NS  +A+ PT   + 
Sbjct: 550 KLRHGFFHWQGW-------EDVNLSIPITE-WEKLSRRCISSGVYNSQFIALMPTVGSSL 601

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G S+S  P + N+  K +   +    N    N + + DL        +++  G +   
Sbjct: 602 LTGFSESYYPYFANISSKVSSKEEVMKPNMTFWNRVSKEDLDT------VRFFSGDVALF 655

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQ 891
                +   +  +AF+      +  A  R  ++DQ+QS + +L E    S + L  +   
Sbjct: 656 PEPLKEKYSLFLSAFDYCAEKQLARARLRAPFVDQSQSHSFHLKEENVVSARFLKDLILS 715

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV---PVTDPNSSTHSLGIPSSCTSD 947
            + +GLKT  YY + +  +++          K          +P S           +  
Sbjct: 716 GYTLGLKTIMYYCKVKKQSTMSSFQCLRDQNKSEMTGNDQGVEPESYIKCTAAGGETS-- 773

Query: 948 TECEVCQ 954
             C  CQ
Sbjct: 774 EACLHCQ 780


>gi|331028061|ref|YP_004421775.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
 gi|301341524|gb|ADK73408.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
          Length = 586

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 126/639 (19%), Positives = 230/639 (35%), Gaps = 101/639 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFL-TTVPDDL 380
           RVA  LA  + +   RA     L     F+ +       G        +CF+  T+ D  
Sbjct: 31  RVAGALA--DDDDHFRAYREITL--DQRFLEAGRVQSAIGAPKLVTPYNCFVSQTIEDST 86

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI           +  GG+G DW+ +R  G  I   +  S G I F+ + ++    +  
Sbjct: 87  EGICDTFSRAFQTMRMGGGIGYDWSTLRPNGDMIVKLDSNSSGPISFMGIFSELCHCIAS 146

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA    L   H D+E F+ +++    D  +    N +  + D FM+       +T
Sbjct: 147 SGHRRGAQMGVLRIDHPDIEAFIRIKQ----DLTKLTGFNISIAVTDEFMEAKASGKPFT 202

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L                                 + ++++  VALW +++   ++   P 
Sbjct: 203 LRF-----------------------------NGRAYKQVDPVALWEEVMRSTWDFADPG 233

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           + F D  N  +   +   + ++N C E  L  +      C LGS+NL+ +   +      
Sbjct: 234 VLFIDTINRMNNLYYCETIAATNPCGEQPLPPN----GACLLGSLNLVRYIKQDALGRRY 289

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +  + I   VR +DNV+D   + +E+ K    + R +GLG  G  +A   L   Y 
Sbjct: 290 FDWAQYRADIPHIVRAMDNVVDRAIYPLEEQKAEAISKRRMGLGFTGLANAGEALGFMYG 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SP  +E   + ++ ++ HA  AS  LA E+G++  F   L+  G +              
Sbjct: 350 SPGFIEFELQLLDELNHHAYMASSLLAAEKGSFPLFDADLFLAGEY-------------- 395

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
                  +L  DE++  +K  G+RNS+  +IAPT TI+      S   +P +        
Sbjct: 396 -----AKQLD-DEVRASIKKNGLRNSHLTSIAPTGTISFAHDYISSGCEPVFGF------ 443

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI--ERIPDDLKKIHATAFEID 852
                       +++  +   +       ++   G I     +    +       + E+ 
Sbjct: 444 ----------EQLDKEGKLLGYSYDGKRKVRMKSGEIITDVSDYGFREFGVEGKMSHEVT 493

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLR-SRSATS 910
               ++        +D + S  +  D          IY Q W  G K             
Sbjct: 494 IQEHLDVLLAAAARVDSSVSKTINTDGSVPWDTFKGIYDQVWERGGKGCTTFNKDGKKMG 553

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           +   T+             D      +    ++C  + +
Sbjct: 554 ILLGTI------------VDEPDRPDTPKDGATCEINPD 580


>gi|311992720|ref|YP_004009588.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
 gi|298684503|gb|ADI96464.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
          Length = 768

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 141/790 (17%), Positives = 269/790 (34%), Gaps = 88/790 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++  +G +  F + +L      A   L + V     +        + ++  +L+  LI 
Sbjct: 4   QVVKRNGEIQDFEASKLNGWGIWASKNLGKHVDWISAVLHVVSTSPEKVTTKELQETLIK 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
               L +    Y ++  R  +  L ++V              +      +     ++ G+
Sbjct: 64  YC--LAKPSWAYHRMAGRLYISLLYKQVY------------DDKIPSIRQVHKNLVKAGM 109

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
                  S  D D   L   + + RD    +  ++   ++Y L    +G   E PQ   M
Sbjct: 110 MTNDFVNSYSDEDYKALEKIIDHSRDLDVAHYQIKQSMEKYSLKDRVDGIYYETPQFTMM 169

Query: 323 RVAMGLALKE---TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           RVAM +   +    E+  R    Y+  S       TP   NSGT +    SC L T  D+
Sbjct: 170 RVAMRMCQNKGTGAERIARIKRHYDAYSRDMVNVPTPYYTNSGTANSGFLSCCLHTNDDN 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  +  A   + M+   S G+G+  +  R  G  + G   +  G I + + A    +  N
Sbjct: 230 LLSLAAANHISYMMTAASAGIGSK-SYTRAAGDKVRGGLIEHMGRINYNR-AEVAMINAN 287

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
               R G+   + ++  I+    + ++       ++   ++      D F+++   +  +
Sbjct: 288 MQNGRGGSQSQFFDSVDIESIAIIPMKNPMTPLAKQVRGLDYGFCYNDYFVQQAATSGDY 347

Query: 500 TLFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            LFS  +  +L         +  YE   ++A  G+ +  + ++A      +L    E G 
Sbjct: 348 YLFSYKDHPELFTAMASNMSVKEYEKLFKKAIAGKNRRLK-VNARDFLMSVLEQSVEVGQ 406

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEI----------------TLNSSSEETAVCNL 602
            +       N          +  SNLC EI                  +    E AVC +
Sbjct: 407 MYTVNLSIMN-GDGTPFKDPILQSNLCLEIRLPTRPYKHITELYKTHYDEGDGEVAVCAI 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
             +++           +        A+ ++   I    +   +   +       G+G++ 
Sbjct: 466 AGVSVGKCITE-----EDYKEAAWVALDMIHTAIHETDYPFPQVAFTAKQRMNAGVGVVD 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               +      +   E      + ME   F+ + AS+ELA+E G       + W  G  P
Sbjct: 521 LAHLMAKNDKNFYDQEGRNFIHKVMERHYFYLLEASIELAEEFGNAPWMHKTKWPDGWLP 580

Query: 723 IDSIGL-LAEVRDELAMNRTSRLPWDELKKRVKTIGMR-NSNCMAIAPTATIANICGVSQ 780
           ID     + E+ DE          W+  +K +K  G    S   A  P  + +   G + 
Sbjct: 581 IDGYKKTVDEICDE-----PLHYDWEAKRKIIKERGGHAFSTLGANMPAESSSLKSGTTN 635

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
               +      K N    F  V         + DL+ +A   ++                
Sbjct: 636 GPYATRDIDMKKRNDQDAFDYVVP-------ESDLYYDAYARNI---------------- 672

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI-----YRQAWLM 895
                  A+ ID   +       QK+ DQ  S +++      +K+D       +      
Sbjct: 673 -------AWNIDIEHIAMKYGIIQKFTDQTTSADVWYTVQGVEKIDSHDLLRGFFALNYY 725

Query: 896 GLKTTYYLRS 905
           G+ T YYL +
Sbjct: 726 GVPTRYYLNT 735


>gi|110633685|ref|YP_673893.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110284669|gb|ABG62728.1| ribonucleoside-diphosphate reductase class II [Chelativorans sp.
           BNC1]
          Length = 1258

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 129/570 (22%), Positives = 220/570 (38%), Gaps = 89/570 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSQLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F+D + N
Sbjct: 241 EGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEAFIDWKVN 299

Query: 469 TGDDR----------------------------------------RRTHDMNTANWIPDL 488
                                                        +R       N +P+ 
Sbjct: 300 EEQKVAALVTGSKIVRKHLDAIMKACINCEGANDDCFDPAKNPALKREIKAAKKNAVPEN 359

Query: 489 FMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++KRV Q A        +  +  D  S+ +                +F  A EN      
Sbjct: 360 YVKRVIQFAKQGYTSIEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGDWTL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + K  + I A  LW K+    + +  P + F    N        G + +SN C+E 
Sbjct: 420 IRRIDGKPGKTIKARDLWEKIGYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  +   CNL SINLLA+   + + D +    ++R    VL+  + +     ++  
Sbjct: 480 MFL----DDTACNLASINLLAYRGKDGRIDIEGYEHSVRLWTIVLEISVMMAQFPSKEIA 535

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K ++ +R +GLG       L    IPY S E   I       ++  A + S E+A E GA
Sbjct: 536 KLSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAAELGA 595

Query: 708 YSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  ++ +                G+        ++ + L AE   + A+   +R  WD  
Sbjct: 596 FPDYERNADAMLRVMRNHRRAAHGLAEGYERLAVNPVPLKAEDCPDPALTAHARAAWDRA 655

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 656 LELGQKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 715

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           E  +   + E+ I++++ +    GN+ + P
Sbjct: 716 EALRTLGYSESQIAEIEAYAVGHGNLNQAP 745



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K         ++ F    L       + + +   +  G  ++     + D+   +   
Sbjct: 788 WLKETFGFTQDQLDDFSFELLPALGFSRKDIEAANIHVCGAMTLEGAPHLKDEHLPVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|326333060|ref|ZP_08199311.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
 gi|325949134|gb|EGD41223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
          Length = 571

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 261/637 (40%), Gaps = 116/637 (18%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFH 350
              G  +   +Y +  + S  E  +      A GLA +   +E        F+  + +  
Sbjct: 27  TTAGYAMFKAKYTV-ADQSVRERYE-TIAATAGGLADEMYPREDGVSWTEPFFEAIWNGW 84

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              STP L N GT      SC  + V D ++G +  L+E A+L++   G       VR  
Sbjct: 85  LSPSTPVLSNLGTDRGLPVSCEGSYVEDSVWGFYETLKEAAILSQNGFGTSAYLGDVRPR 144

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA     NGK+ GV+P      +    ++QG  R+G+   YL   H D  E  DL     
Sbjct: 145 GAKFSD-NGKANGVVPVFCNFVEMTNQISQGATRRGSWAGYLPVDHPDFYELADL----- 198

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                            +F +   +N GW                  F  A+ +     D
Sbjct: 199 -----------------IFREPANKNVGWI-----------------FSQAFIDRMLAGD 224

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTE 587
           +          A+  ++++L +    G  +I   D  N     S Q +     +SNLC+E
Sbjct: 225 K---------DALERYQRVLKIRVVLGKGYIWKVDTVNAAQTESYQANGLANKASNLCSE 275

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCH 641
           ITL S  + +  C L S+NL  +      D  K   T   A   LD V +          
Sbjct: 276 ITLFSDEDHSYTCVLSSLNLSTY------DEWKDQDTAYVATVFLDAVAEAFLRKARTIR 329

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+A +     R++GLG+MG+   L    +P+ S +A  +  +  E IS  A +AS  +
Sbjct: 330 GLERAVRYTEKARSLGLGVMGYHDYLQKQRVPFESDKAAALNKDIFERISSRADAASRWM 389

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
               G                                                 +G RNS
Sbjct: 390 GSVAGIPEWC--------------------------------------------VGRRNS 405

Query: 762 NCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + MAIAPT + A I G  SQ I+P   N++ ++  +G+    N  LV  +K+R ++D+A 
Sbjct: 406 HLMAIAPTMSTAVIVGGTSQGIEPYVANVWNQTTSAGEMPRANQNLVEVMKERGVYDQAH 465

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           ISD+  H GS+ ++  + D  K++  T +EID   L+  AS RQ +IDQAQSLNL+   +
Sbjct: 466 ISDIIDHGGSVQHVSWLDDHEKEVFRTGYEIDQEILLARASDRQVYIDQAQSLNLFFQAD 525

Query: 880 PSGKKLDFIYRQA-WLMGLKTTYYLRSRSATSVEKST 915
            + + +  I++ A     +K+ YYLRSR+     K +
Sbjct: 526 ATPQYISKIHKLALLDPNIKSLYYLRSRAGIQASKQS 562


>gi|114704434|ref|ZP_01437342.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
 gi|114539219|gb|EAU42339.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
          Length = 1331

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/622 (20%), Positives = 223/622 (35%), Gaps = 101/622 (16%)

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L         PQ F      GL              Y       F        +S   
Sbjct: 144 YMLATQKVAPNSPQWFN----TGLHWAYGIDGPGQGHHY-----VDFQTGELRASDSAYE 194

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  +    GKS
Sbjct: 195 HPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSFLRGEGEKLS-GGGKS 253

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD--------- 471
            G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++ +    +         
Sbjct: 254 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYINWKVREEEKVAALVTGS 313

Query: 472 -------------------------DRRRTHDMNTAN------WIPDLFMKRVTQ----- 495
                                    D  +   +  A        +P+ ++KRV Q     
Sbjct: 314 KTVAKNLKLILSACVNCEGPEGDCFDPNKNPALKRAVKDAKKAQVPENYVKRVIQFARQG 373

Query: 496 --NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENYE--RQADRGEIKVFRKI 540
             +  + ++  D  S+ +                +F  A EN E  +   R + KV + +
Sbjct: 374 FTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVENDEEWKLIRRTDGKVHKTV 433

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW ++    + +  P + F    N        G + +SN C+E        +   C
Sbjct: 434 KARELWDQIGYAAWASADPGLHFNTTMNDWHTCPAAGKIRASNPCSEYMFL----DDTAC 489

Query: 601 NLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL S+NLL          +FD        R    VL+  + +      +  + ++ +R +
Sbjct: 490 NLASLNLLQFVDATSEAKRFDTASFEHATRLWTIVLEISVLMAQFPSREIARLSYDYRTL 549

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG       L    IPY S     I       ++  A   S E+A E G +  ++ +  
Sbjct: 550 GLGFANIGGLLMSGGIPYDSRHGRAICGAISALMTGIAYKTSAEMAGELGTFPDYERNAE 609

Query: 715 ----------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                         G+        +D + L      +  ++  ++  W E  +  +  G 
Sbjct: 610 HMSRVIRNHARAAHGIANGYEKLAVDPVPLDHASLADKRLSTRAKAAWTEAVELGEKFGY 669

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   + 
Sbjct: 670 RNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYS 729

Query: 818 EAMISDLKYHDGSIGNIERIPD 839
           EA I++++ +    GN+ + P 
Sbjct: 730 EAQIAEIEAYAVGHGNLNQAPA 751



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +  +  Y  +W + LK    Y   S+
Sbjct: 866 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCNAAYMLSWKLALKANALYRDGSK 921


>gi|260576393|ref|ZP_05844384.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259021464|gb|EEW24769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 1222

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 134/632 (21%), Positives = 222/632 (35%), Gaps = 102/632 (16%)

Query: 294 EYLGLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
                +  YD  RY L    +    PQ F      GL             +Y       +
Sbjct: 129 TEADARAYYDEMRYMLARQMAAPNSPQWFN----TGLHWAYGIDGPSQGHYY-----VDY 179

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVR 408
                T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +R
Sbjct: 180 KSGELTKSASAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
           G G  +    GKS G++ FLK+ +  A A+  G   R+ A     +  H DVE F++ + 
Sbjct: 240 GEGERLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDVDHPDVEAFINWKV 298

Query: 468 NTGDD-----------RRRTHDMNTA-----------------------------NWIPD 487
                            ++ +++ TA                               IP+
Sbjct: 299 IEEQKVASLVAGSKMHEQKLNEIFTAIGGWDGSIADATDPAKNEALKAAIRGAKRVMIPE 358

Query: 488 LFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ----- 528
            ++ RV Q              +  W   +   VS  +         A+    +      
Sbjct: 359 TYINRVLQYARQGFSSIEFPTYDTDWDSEAYISVSGQNSNNSVRVTDAFLQAVKDDADWA 418

Query: 529 -ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + KV + I A  LW ++    +    P I F D  N        G + +SN C+E
Sbjct: 419 LIRRTDGKVSKTIKAKELWDQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   +   CNL S+NLL  FAN QFD +      R     L+  + +     ++  
Sbjct: 479 YMFL----DDTACNLASMNLLTFFANGQFDAESYIHACRLWTVTLEISVMMAQFPSKEIA 534

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R +GLG       L  + + Y S E   +       ++  A + S E+A E GA
Sbjct: 535 QLSYDFRTLGLGYANIGGLLMNMGLGYDSAEGRAMCGALTALMTGVAYATSAEMAGELGA 594

Query: 708 YSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           ++ +  +                          +  + L      +  +   ++  WDE 
Sbjct: 595 FAGYARNSAHMLRVIRNHRTAAYGRTSGYEALNVAPVPLDQVNCPDQTLVTLAKSAWDEA 654

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
               +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 655 LVLGEKHGFRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVP 714

Query: 809 ELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
              ++  +  A I+++  H    GSIGN   I
Sbjct: 715 AALEKLGYGSAQIAEIIAHAVGHGSIGNCPGI 746



 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + +  S  +    Y  +W +G+K    Y   S+ +  
Sbjct: 861 EAHIHMMAAAQSFISGAISKTINMANSASIGETLAAYELSWSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLN 924
           +  + ++  D   +
Sbjct: 921 LASALVEDDDEAAD 934


>gi|218681258|ref|ZP_03529155.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CIAT 894]
          Length = 441

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 196/462 (42%), Gaps = 44/462 (9%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLY 252
             L+   + +   L + E        R  L+K R   ++       +     H+      
Sbjct: 5   ETLDYHALNAMLNLYDDE-------GRIQLDKDRMAAKQYFLQHVNQNTVFFHN-----L 52

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +
Sbjct: 53  REKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFD 111

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G  +  +L
Sbjct: 112 GKRYLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGEL 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +
Sbjct: 169 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 229 KLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +    N    LFSP +V  ++ +   E  +  E Y        I   +KI A   ++ 
Sbjct: 289 SFELARNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVADARISK-KKIKAREFFQV 346

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S + +            
Sbjct: 347 LAEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVSEASDYNDDLSYKHLGK 404

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
              CNLGS+N+ A       D      TI T++R L  V D+
Sbjct: 405 DISCNLGSLNIAA-----AMDSTDFGKTIETSIRALTAVSDM 441


>gi|46202431|ref|ZP_00053222.2| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1224

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/598 (19%), Positives = 215/598 (35%), Gaps = 91/598 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGND 403
           S   F         S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +
Sbjct: 175 SYVDFKTGKLVRSKSAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 235 FSRLRGEGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKF 293

Query: 463 LDLR--------------------------------------KNTGDDRRRTHDMNTANW 484
           +  +                                      +      +R         
Sbjct: 294 ISWKVREEQKVAALVAGSRLAARCLTEVMAACREWDGQDGEARFDPKINKRLKKAIIEGR 353

Query: 485 ---IPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IA 521
              IP+ +++RV Q A        + +   D  S+ +     +               + 
Sbjct: 354 KCEIPENYIQRVIQFARQGYTQIDFPVLDTDWDSEAYLTVSGQNSNNSVRVDNGFLNAVL 413

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +++      R   K  + + A  LW ++    +    P I F    N        G +++
Sbjct: 414 HDSDWNLKHRNSTKTSKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINA 473

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        +   CNL S+NLL     +  FD +      R    VL+  + +  
Sbjct: 474 SNPCSEYMFL----DDTACNLASLNLLCFRNDDGSFDVEGFRHACRLWTMVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               K  + ++  R +GLG       L    IPY S +   +       ++  + + S +
Sbjct: 530 FPSPKIAELSYEFRTLGLGYANVGGLLMAGGIPYDSDKGRALIGAITALMTGESYATSAD 589

Query: 701 LAQERGAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTS 742
           +A+E GA+  F+ +                          +  + L A    +  +   S
Sbjct: 590 MAEELGAFEGFEKNRAAMMRVIRNHRRAAHGMGTGYEGLSVIPVPLDAANCPDAPLLAAS 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV 801
           R  WDE   + +  G RN+    +APT TI  +    +  I+P +  +  K    G +  
Sbjct: 650 RQAWDEALAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 709

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
           + + +V E  +   ++E  I+++  +     ++   P  +   + A  F+   +  IE
Sbjct: 710 IINRMVPEALRTLGYNEGDIAEIIRYAVGHASLRGAPHVNHDSLKAKGFDDATLDKIE 767



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 13/160 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA-- 848
             +      ++ +  + L       E + +   Y  G  ++     + D+   +   A  
Sbjct: 792 ETLGIPQAKLDDYTFDMLAFLGFSKEQIDAANTYVTGAMTLEGAPFLKDEHLPVFDCASP 851

Query: 849 ------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--T 899
                   +     I   +  Q +I  A S  + + +  + +     Y  +W +G+K   
Sbjct: 852 CGRIGKRYLGVDSHIRMMAAAQPFISGAISKTINMANSATVEDCKEAYMLSWRLGIKANA 911

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            Y   S+ +  ++ S L       + +      + T  + 
Sbjct: 912 LYRDGSKLSQPLQASLLDDAGELADDLADASMTTRTEIVA 951


>gi|27379385|ref|NP_770914.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|81737311|sp|Q89MB9|NRDJ_BRAJA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|27352536|dbj|BAC49539.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bradyrhizobium
           japonicum USDA 110]
          Length = 1254

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 146/747 (19%), Positives = 258/747 (34%), Gaps = 113/747 (15%)

Query: 190 YDGL----SESDLETALIFSS--RTLIEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQK 242
           Y G+    + S++             +E    +++V +  L +K  R+  +    KK ++
Sbjct: 15  YAGIDFRLTTSEIRNPDGSVVFKLDNVEVPTEWSQVASDVLAQKYFRKAGVAARLKKVEE 74

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL----GL 298
            +                +   K R + E         LA    Y   +   Y       
Sbjct: 75  ESVPSFLWRSVPDTEALSQLPEKERYVSELSAKQVFDRLAGCWTYW-GWKGGYFTNDEDA 133

Query: 299 QILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Q  YD  RY L +       PQ F      GL             +Y             
Sbjct: 134 QAFYDELRYMLAMQMVAPNSPQWFN----TGLHWAYGIDGPGQGHYY-----VDPFTGKL 184

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG G  
Sbjct: 185 TKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR------ 466
           +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +      
Sbjct: 245 LS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIETYIDWKVKEEQK 303

Query: 467 -------------------------KNTGDD---------RRRTHDMNTANWIPDLFMKR 492
                                    + +GDD          RR   +   + +PD ++KR
Sbjct: 304 VAALVTGSKINQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRSLVPDNYIKR 363

Query: 493 VTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYERQADRG 532
           V Q       +  + ++  D  S+ +                +F  A E         R 
Sbjct: 364 VIQFAKQGYKDIQFDVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLNART 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E     
Sbjct: 424 SKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL S NLL     A   FD +      R    VL+  + +     +   + +
Sbjct: 483 ---DDTACNLASANLLTFYNVATKHFDVEGYEHLCRLWTVVLEISVMMAQFPSKAIAELS 539

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  + +PY S E   +       ++      S E+A E G +  
Sbjct: 540 YEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALTAVMTGITYKTSAEIAAELGTFPG 599

Query: 711 FKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +K +                          ++ + L      +  +   ++  WD   + 
Sbjct: 600 YKKNAAHMLRVIRNHRRAAHGQSNGYEALSVNPVPLDLVSCPQADLVSHAQAAWDAALEL 659

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    
Sbjct: 660 GEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAAL 719

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIP 838
           +   + E+ I++++ +    G++   P
Sbjct: 720 RALGYRESEIAEIEAYAVGHGSLSNAP 746



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +      + +   + L+        + +   +  G  ++     +  +   +   
Sbjct: 789 FIRDQLGIGAEAIAAPGFDLLQAVGFTKREIEAANVHICGAMTVEGAPHLKAEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|284504237|ref|YP_003406952.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
 gi|282935675|gb|ADB03990.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
          Length = 916

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 206/444 (46%), Gaps = 35/444 (7%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
            ++S+   +            P++  +  R  + KL  E      +  +      M+ + 
Sbjct: 31  CTDSEFFKSFSEVCVFKSFIHPDWGVLAGRAEIRKLWSETPEKFSQMAKG-----MKSVL 85

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH---I 309
            E F  ++                    L N   +ERD  F+++ +  L   Y L     
Sbjct: 86  DEKFYEFVASHS--------------QELDNICSHERDNRFDWMAINTLEKSYLLKKKCF 131

Query: 310 NGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +G     E PQ  ++RVA  L + + +K K   EFY+ LS   +  ++P  FN+G +   
Sbjct: 132 DGKLRVFERPQHMYLRVATQLWMPDVQKIK---EFYDGLSLGFYTVASPIFFNAGLKKFS 188

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
            SSCFL  +PDDL GI    ++ A+++  SGG+G   + VR   + I G  G+S GV+  
Sbjct: 189 GSSCFLGKIPDDLIGIIDTWKQMAIISSRSGGVGYSASSVRH--SDIGGGLGESSGVVSL 246

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           L+V +     V+QGG+RKG+   +L  WHID+  F+D +K  GDD ++   +  A W  D
Sbjct: 247 LRVPDAVLGYVDQGGRRKGSGTFFLACWHIDIFTFVDAKKPGGDDLKKARQLFYAIWTSD 306

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  +  W+LF P E   L ++YGK+FE  YE YE++           + A  LW 
Sbjct: 307 LFMKRVETDGNWSLFCPKEAPGLDEIYGKDFEDLYERYEKEGRAR-----TTVKAQELWH 361

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +L    E G P+I +KD    ++ Q+H G+ HS NLC        ++E     + S+  
Sbjct: 362 HILVAQAEVGMPFIVYKDAICRKNNQKHTGIPHSLNLCVAGNTRILTKEKGHVEIESVMG 421

Query: 608 LAHFANNQFDYDKLASTIRTAVRV 631
                 N  ++  L   IRTA   
Sbjct: 422 QELHVWNGEEW-SLTKIIRTATNQ 444



 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/398 (24%), Positives = 177/398 (44%), Gaps = 41/398 (10%)

Query: 563 FKDPCNIRSPQQHVGVVHSSN--LCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
             D    +  ++  G+        C EIT N+S EE A CNL S+ L +     + ++D+
Sbjct: 514 NMDTFCFKEEKRGRGMFEGIVTGQCLEITENTSDEEIASCNLSSVCLNSFVDKESKKYDF 573

Query: 619 DKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             LAS++R  VR L+NV+D N +   +   K +N  HR +G+G+ G      ++ I +  
Sbjct: 574 GALASSVRFIVRSLNNVVDRNYYPSELPSIKTTNLRHRPLGIGVQGLADTFAMMDICWGD 633

Query: 677 PEAVEIADESMEFISFHAISASVELAQER-------GAYSSFKGSLWDQGVFPIDSIG-- 727
            EA  +  +  E +   A++ S ++++ER         Y +F GS   +G F  D     
Sbjct: 634 EEARNLNRKIFETMYHAAVTESRKISKERASLGFQTPYYETFPGSPLSKGFFAHDLWDAE 693

Query: 728 ----------------LLAEVRDELAMNRT-SRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                            +   R +  +  +     WD+ +      G+ NS  +A+ PTA
Sbjct: 694 ALHKESGIPFDSITVEQVKSYRKKKGIPESFCGFDWDKERLETMRDGVYNSLLIALMPTA 753

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I   ++S +     +  ++ +SG F VVN   ++++    +W++  +       GS
Sbjct: 754 STAQILRNNESFEAFTSIIGKRTVLSGAFAVVNRHFIDDMIGLGVWNKKNMLICLKGQGS 813

Query: 831 IGNI--ERIP-----DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +  I  + I      + +K+ +  AFE+    L +    R +++ Q+ S N ++  P+ +
Sbjct: 814 VQGITTDDITKFERLEHIKRKYLNAFELSQKRLCQLGIDRSRYVCQSSSHNCFMRNPTYQ 873

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           KL   +   W  G KT  YYLR+ SA  V  S     +
Sbjct: 874 KLTSYHFFQWENGAKTGMYYLRT-SAPGVAVSVAAEAE 910


>gi|126737866|ref|ZP_01753596.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126721259|gb|EBA17963.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 1239

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 152/751 (20%), Positives = 248/751 (33%), Gaps = 127/751 (16%)

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
              IE   N+ +V    + +K  R+          ++     +   PE+  R +  G   
Sbjct: 65  LENIEVPANWTQVACDVIAQKYFRKA------GVPQSLKKVAEKDVPEFLWRSVPAGKDV 118

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAF 320
               ES        LA    Y   +   Y       +  YD  RY L    +    PQ F
Sbjct: 119 PTGSESSSKQVFDRLAGAWAYW-GWKGGYFSSEEDARSYYDEMRYMLASQRAAPNSPQWF 177

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
                 GL              Y       F     T   S   HPQ  +CF+ +V DDL
Sbjct: 178 N----TGLHWAYGIDGPAQGHHY-----VDFETGKLTKSKSSYEHPQPHACFIQSVSDDL 228

Query: 381 Y---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
               GI       A L KY  G G +++ +RG G  +    GKS G++ FLK+ +  A A
Sbjct: 229 VNDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEPLS-GGGKSSGLMGFLKIGDRAAGA 287

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDL------------------------------- 465
           +  G   R+ A    ++  H D+E+F+                                 
Sbjct: 288 IKSGGTTRRAAKMVIVDADHPDIEDFIQWKVLEEQKVASIVAGSKMHEKMLNGIFEAIRS 347

Query: 466 ---RKNTGDDRRRTHDMNTANW------IPDLFMKRVTQNA-------GWTLFSPDEVSD 509
                    +      +  A        IP+ ++KRV   A        +  +  D  S+
Sbjct: 348 WDGEATDAYEPNSNPALKKAVREAKKLSIPETYIKRVLDYAKQGYDSIEFPTYDTDWDSE 407

Query: 510 LHDLYGK-----------EFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            +                 F  A E        +R   +V + + A  LW K+    +  
Sbjct: 408 AYSSVSGQNSNNSIRVTNAFLHAVEKDADWELINRTNGEVAKTVKARELWEKVGHAAWAC 467

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
             P I F D  N      + G +  SN C+E        +   CNL S+NLL       F
Sbjct: 468 ADPGIQFHDTVNEWHTCLNDGEIRGSNPCSEYMFL----DDTACNLASLNLLTFLKAGNF 523

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             +      R     L+  + +     +   + +H +R +GLG       L  +   Y S
Sbjct: 524 QAEDFMHACRLWTVTLEISVTMAQFPSKAIAQRSHDYRTLGLGYANIGGLLMNMGFSYDS 583

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQ 718
            E   +       ++  A + S E+A E G+++ +                   G     
Sbjct: 584 EEGRALCGSLTALMTGVAYATSAEMASELGSFAGYANNSEHMLKVIRNHRNAALGKATGY 643

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               +  + L      +  +   +   WDE     +  G RN+    IAPT TI  +   
Sbjct: 644 EGLSVPPVPLDIRGCPDARLTDLALGAWDEALALGEKHGYRNAQTTVIAPTGTIGLVMDC 703

Query: 779 -SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNI 834
            +  I+P +  +  K    G +  + +  V    +   +  A I ++  +    G+IGN 
Sbjct: 704 DTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEGLGYSSAEIEEIVSYAVGHGTIGNA 763

Query: 835 ERI-----------PDDLKKIH---ATAFEI 851
             I           P++L KI     +AF+I
Sbjct: 764 PGINHTSLTGHGFGPNELSKIDRALESAFDI 794



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+        +   +D      ++     + ++   I   A            
Sbjct: 820 NDPTFDLLRHLGFNRADIDAANDHVCGTMTLEGAPHLKEEHYAIFDCANPCGKKGKRYLS 879

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ S +     Y  +W +G+K    Y   S+ + 
Sbjct: 880 VESHIRMMAAAQSFISGAISKTINMPNDASIEDCQRAYELSWSLGVKANALYRDGSKLSQ 939

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  D     +    P      L 
Sbjct: 940 PLAAALVEDDDEAAETLETGTPQEKAAVLA 969


>gi|149913748|ref|ZP_01902280.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
 gi|149812032|gb|EDM71863.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
          Length = 1008

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 135/648 (20%), Positives = 233/648 (35%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL             +Y       +     T  +S  
Sbjct: 134 RYMLARQMAAPNSPQWFN----TGLHWAYGIDGPSQGHYY-----VDYQTGELTKSSSAY 184

Query: 364 RHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL G           A L KY  G G +++ +R  G  +    GK
Sbjct: 185 EHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAAGEKLS-GGGK 243

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD------- 472
           S G++ FLK+ +  A A+  G   R+ A     +  H D+EEF++ +             
Sbjct: 244 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFINWKVREEQKVASIVAG 303

Query: 473 ----RRRTHDMNTA-----------------------------NWIPDLFMKRVTQNA-- 497
                ++ +++ TA                               IP+ ++KRV   A  
Sbjct: 304 SKMHEQKLNEIFTAIREWDGSSEDAVDPKKNPSLKAAIRSAKQVQIPETYVKRVLDYAKQ 363

Query: 498 -----GWTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRK 539
                 +  +  D  S+ +                 F  A    E  A  +R +  V + 
Sbjct: 364 GYVSIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLEAVRKDEDWALINRTDGGVAKT 423

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW ++    +    P I + D  N        G +  SN C+E        +   
Sbjct: 424 IKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMFL----DDTA 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL  F N  FD +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 480 CNLASMNLLQFFHNGAFDAESYVHATRLWTVTLEISVMMAQFPSKEIAQLSYEFRTLGLG 539

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-- 717
                  L  + + Y S E   +       ++  + + S E+A E GA++ ++ +     
Sbjct: 540 YANIGGLLMNMGLGYDSDEGRAMCGALTALMTGVSYATSAEMAGELGAFAGYERNREHML 599

Query: 718 ----------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                                I  + L  +   +  +   +   WDE  +  +  G RN+
Sbjct: 600 RVIRNHRNAAYGNSDGYEALAIKPLPLDQKNCPDARLVDLAMASWDEALRLGEKHGYRNA 659

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI  +    +  I+P +  +  K    G +  + +  V    ++  +  A 
Sbjct: 660 QATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINHSVPAALEKLGYGSAQ 719

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    G+IGN   I           P++L+K+ A   +AF+I
Sbjct: 720 IEEIVSYAVGHGTIGNAPGINHTSLVGHGFGPNELQKVDAALGSAFDI 767



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 839 DDLKKIHATAFE------------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
             LK+ H T F+            +     I   +  Q +I  A S  + + ++ + +  
Sbjct: 827 PHLKEEHLTVFDCANPCGKKGKRYLSVDSHIYMMAAAQSFISGAISKTINMPNDATIEDC 886

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
              Y  +W +G+K    Y   S+ +  +  S ++  +     +           L 
Sbjct: 887 QKAYELSWSLGVKANALYRDGSKLSQPLAASLVEDDEDAAEILENGSAQEKAAVLA 942


>gi|84503411|ref|ZP_01001471.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
 gi|84388198|gb|EAQ01150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
          Length = 1216

 Score =  295 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 148/770 (19%), Positives = 261/770 (33%), Gaps = 125/770 (16%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           ++E    +A         + V + +     DG     L+   + +S         +++V 
Sbjct: 2   KIERKFTKAGQD-AYADVEFVTTSSEIRNPDGTIVFKLDDCEVPAS---------WSQVA 51

Query: 221 ARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +  + +K  R+  +    KK ++          PE+  R + +G +     E+       
Sbjct: 52  SDVIAQKYFRKAGVPASLKKVREKN-------VPEFLWRSVADGEEVETGGETSARQVFD 104

Query: 280 YLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            LA    Y   +   Y       +  +D  RY L    +    PQ F      GL     
Sbjct: 105 RLAGAWTYW-GWKGGYFSSEEDARAYFDEMRYMLATQRAAPNSPQWFN----TGLHWAYG 159

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQEN 390
                   +Y        +    T   S   HPQ  +CF+ +V DDL G           
Sbjct: 160 IDGPSQGHYY-----VDHVTGKLTKSKSAYEHPQPHACFIQSVGDDLVGDGGIMDLWVRE 214

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVC 449
           A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+  G   R+ A  
Sbjct: 215 ARLFKYGSGTGTNFSSLRAEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKM 273

Query: 450 AYLETWHIDVEEFLDLRKNT----------------------------------GDDRRR 475
             ++  H D+EE+++ +                                       D   
Sbjct: 274 VIVDADHPDIEEYINWKVKEEQKVASIVAGSKMHERCLNAIFKAIRTWDGTEEGAYDPNE 333

Query: 476 THDMNTAN------WIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG------- 515
              + TA        IP+ ++KRV   A        +  +  D  S+ +           
Sbjct: 334 NDALKTAVREAKKSAIPETYIKRVLDYAKQGYASIEFPTYDTDWDSEAYASVSGQNSNNS 393

Query: 516 ----KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                 F  A EN        R +  V + I A  LW  +    +    P I + D  N 
Sbjct: 394 VRVTDAFLKAVENDGDWELIRRTDGSVAKTIKARDLWETIGHAAWACADPGIQYHDTVNA 453

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
                  G +  SN C+E        +   CNL S+NLL    +  F  +      R   
Sbjct: 454 WHTCPEDGAIRGSNPCSEYMFL----DDTACNLASMNLLTFLEDGVFQAEDYVHATRLWT 509

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             L+  + +     ++  + ++  R +GLG       L  + + Y S E   +A      
Sbjct: 510 ITLEISVLMAQFPSQEIAQRSYDFRTLGLGYANIGGLLMNMGLGYDSDEGRAMAGALTAI 569

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWD------------------QGVFPIDSIGLLAE 731
           ++  + + S E+A E G +  +K +                          +  + L   
Sbjct: 570 MTGVSYATSAEMAGELGTFPGYKRNAEHMLRVIRNHRNAAYGRTDGYEQLAVKPVALDHA 629

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLY 790
              +  +   ++  WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + 
Sbjct: 630 NCPDGKLVDLAKTSWDEALRLGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVK 689

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
            K    G +  + +  V    ++  +  A I ++  +    GSIGN   I
Sbjct: 690 FKKLAGGGYFKIINRSVPAALEKLGYGSAQIEEIISYAVGHGSIGNAPAI 739



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 50/163 (30%), Gaps = 13/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHAT 847
           + K  +      +N    + L+      + +   +D      ++     +  +   +   
Sbjct: 780 FCKKTLGIPAEKLNDPGFDLLRHLGYTRKEIEAANDHVCGTMTLEGAPYLNPEHLVVFDC 839

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A                I   +  Q +I  A S  + + ++ + +     Y  +W +G+K
Sbjct: 840 ANPCGKKGKRFLSTESHITMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGIK 899

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
               Y   S+ +  +  + ++  D     +     +     L 
Sbjct: 900 ANALYRDGSKLSQPLASALVEDDDDAAEVLESGSSHEKAAVLA 942


>gi|294676999|ref|YP_003577614.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294475819|gb|ADE85207.1| ribonucleoside-diphosphate reductase NrdJ-2
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 1224

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 131/635 (20%), Positives = 221/635 (34%), Gaps = 108/635 (17%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVA------------MGLALKETEKEKRAVEFYNLLSS 348
               YF   + +R    +   M  A             GL             +Y     
Sbjct: 122 WKGGYFTTEDDARAYYDELRHMLAAQMAAPNSPQWFNTGLHWAYGIDGPSQGHYY----- 176

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWT 405
             +     T   S   HPQ  +CF+ +V DDL G   I       A L KY  G G +++
Sbjct: 177 VDYATGVLTKSASAYEHPQPHACFIQSVRDDLVGEGGIMDLWVREARLFKYGSGTGTNFS 236

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD 464
            +R  G  +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF++
Sbjct: 237 SLRAEGERLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEEFIN 295

Query: 465 L-----------------------------RKNTGDDRRRTHD-MNTAN----------W 484
                                         R   G D  RT   +N A            
Sbjct: 296 WKVIEEQKVASLVAGSKMHERELNKIFEAIRAFDGSDEGRTDPAVNVALKAAIRSAKKAM 355

Query: 485 IPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY- 525
           IP+ ++ RV Q A        +  +  D  SD +                 F  A ++  
Sbjct: 356 IPETYINRVLQYARQGFSSIEFPTYDTDWDSDAYISVSGQNSNNSVRVTDAFLKAVKDDA 415

Query: 526 -ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R +  V + + A  LW ++    +    P I F D  N        G +  SN 
Sbjct: 416 NWELLRRTDGSVAKVVKARDLWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNP 475

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C+E        +   CNL S+NLL  +   +FD +      R     L+  + +     +
Sbjct: 476 CSEYMFL----DDTACNLASLNLLTFYTGGEFDAEAYVHATRLWTMTLEISVLMAQFPSK 531

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  + ++  R +GLG       L  + + Y S E   +       ++  + + S E+A E
Sbjct: 532 EIAQRSYDFRTLGLGYANIGGLLMTMGLGYDSDEGRALCGALSAIMTGISYATSAEMAAE 591

Query: 705 RGAYSSFKGSLW----------------DQGV--FPIDSIGLLAEVRDELAMNRTSRLPW 746
            G +  +  +                   +G     +  + L      +  + R +R+ W
Sbjct: 592 LGPFPGYAKNRAHMLRVIRNHRTAAHGKSKGYEGLEVPPVPLDLANCPDDRLLRLARMAW 651

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DE  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 652 DEALRLGEEHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 711

Query: 806 LVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
            V    +   +  A I+++  +    GS+GN   I
Sbjct: 712 SVPAALETLGYGSAQIAEIIAYAVGHGSLGNCPGI 746



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + +  + + +   Y  +W +G+K    Y   S+ +  
Sbjct: 861 ESHIRMMAAAQSFISGAISKTINMANTATIEDVKAAYELSWSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +           L 
Sbjct: 921 LASALVEDDEEAEEILATGSQQEKAAVLA 949


>gi|57641671|ref|YP_184149.1| ribonucleotide-diphosphate reductase subunit alpha [Thermococcus
            kodakarensis KOD1]
 gi|57159995|dbj|BAD85925.1| ribonucleoside-diphosphate reductase [Thermococcus kodakarensis KOD1]
          Length = 1746

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 19/366 (5%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
            S+   +         E   CNL SINL      +      FD+D+ A  I+   + LDN 
Sbjct: 1289 SNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNA 1348

Query: 636  IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            ID+N   + +  ++    R IG+G+MG   AL  L IPY S E  +   ++ E+++F+A 
Sbjct: 1349 IDVNKFPLPEIDRNTKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEYLTFYAY 1408

Query: 696  SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
              SVE A+ERG +  ++ + +  G  P++                   LPWDEL + +K 
Sbjct: 1409 KRSVEAAKERGPFPLYEKTRYKDGELPVEG----------FYHREIWNLPWDELVEEIKK 1458

Query: 756  IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             G+RN       PT +++ I   S  I+P +  +Y KS   G+F  V+     ELK+R L
Sbjct: 1459 YGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGL 1518

Query: 816  WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            W + ++  +  + GS+  +E IP+D++++  TA +I  +  I + +  Q W+  + S  +
Sbjct: 1519 WSDEILKKISDNYGSVQGLEEIPEDMQRVFVTAMDIHWLDHILAQANIQLWLTDSASKTI 1578

Query: 876  YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
             + ++ + + +   Y  A+ +G K     R  S  SV+  +++G   K   VP    + +
Sbjct: 1579 NMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSL-SVQVYSVEGEKKKR--VPAKPSDYA 1635

Query: 935  THSLGI 940
               L  
Sbjct: 1636 VEKLKT 1641



 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 107/255 (41%), Gaps = 18/255 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V  +         + + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDKERIRWAIQRAMLEVGVRD--------EKLLNRVVRRVVRRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I +IE+IQD VE  LM++G   + + Y+LYR++++++R  +    +   +    K   
Sbjct: 57  GQIPNIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFS 116

Query: 150 DDGTLISFNSKRLE----MIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203
            +   +  +   ++     I+E      + V+   V+ +    + ++D     + + + I
Sbjct: 117 LNALRVLASRYLIKNEKGEIIESPRELFERVAILAVIPDILYDERVFDKNGGHEQDVSAI 176

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              R  ++ E +      RF L K   E L  +Y++  +    ++     +   + +E G
Sbjct: 177 ERYRENLD-EYDGKFSIGRFRLNKWHFERLLNLYRELAEKGQMKLPI---DEVLKMLENG 232

Query: 264 VKARLLHESMMDFDL 278
                  E    F L
Sbjct: 233 AFDNYEDEIEEYFRL 247



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 80/212 (37%), Gaps = 32/212 (15%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
              G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE WH 
Sbjct: 754 HNTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHP 813

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+E+F+  ++          + N +  + + F + + +   + L +P             
Sbjct: 814 DIEKFIHAKEKN-TGTNVLSNFNISVGLWEDFWEALKEGKRYPLINPRTGE--------- 863

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576
                               ++I   +L+ ++  M +    P + F D  N R+  +   
Sbjct: 864 ------------------KVKEIDPKSLFEELAYMAWAKADPGVVFFDVINRRNVLEPAK 905

Query: 577 -GVVHSSNLC--TEITLNSSSEETAVCNLGSI 605
              + ++N C   +  + +         L S+
Sbjct: 906 GEKIRATNPCVVGDTRVLTPEGYIKAEELFSL 937



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 51/305 (16%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEAC------------------------------S 171
            P  K+M  DG ++ F+ +R+   ++ A                                
Sbjct: 1   MPVEKVMKRDGRIVPFDKERIRWAIQRAMLEVGVRDEKLLNRVVRRVVRRVNELYDGQIP 60

Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLE---TALIFSSRTLIEKEPNYAKVTARFLLEKL 228
            ++++   + L      ++D      L     A I   +  I  +    ++  RF L  L
Sbjct: 61  NIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSLNAL 120

Query: 229 R--------REVLTTVYKKPQKATHHEM------QCLYPEYFCRYIEEGVKARLLHESMM 274
           R        +     + + P++              LY E        G +  +      
Sbjct: 121 RVLASRYLIKNEKGEIIESPRELFERVAILAVIPDILYDERVFDK-NGGHEQDVSAIERY 179

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
             +L          R F       + L + Y       ++++P    +++    A    E
Sbjct: 180 RENLDEYDGKFSIGR-FRLNKWHFERLLNLYRELAEKGQMKLPIDEVLKMLENGAFDNYE 238

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            E    E++ L++  +FM +TP L NSG     LS+CF+  + DD+  I  A  + AM+ 
Sbjct: 239 DE--IEEYFRLMTGQYFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQ 296

Query: 395 KYSGG 399
           K  GG
Sbjct: 297 KAGGG 301


>gi|221105290|ref|XP_002167438.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 323

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 184/305 (60%), Gaps = 11/305 (3%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH---INGSRIEMPQAFFMRVAMGLALKETEKE 336
            L N ++Y+RD+ F+Y G++ L   Y           IE PQ   MRVA+G+  ++ +  
Sbjct: 26  RLQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDID-- 83

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
              +E Y+L+S  +F  +TPTLFN+GTR  Q+SSCFL  + D++  IF A+++ A  +K+
Sbjct: 84  -SVIETYDLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKW 142

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G   + +R  G+ I GTNG + GV+P   + N  A  +NQGG+R G++  YLE  H
Sbjct: 143 AGGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHH 202

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ +F DLRKNTG+D  R  D+  A W+P LFMKRV  +  W+L  PD+   L+ ++ +
Sbjct: 203 ADIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSE 262

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E+   YE YE +      K  R+I A  LWR +L    ETG P+I +KD  NI+S Q+++
Sbjct: 263 EYVKLYEMYESEG-----KYVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNL 317

Query: 577 GVVHS 581
           G + S
Sbjct: 318 GTIRS 322


>gi|288957136|ref|YP_003447477.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
 gi|288909444|dbj|BAI70933.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
          Length = 1250

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/565 (19%), Positives = 203/565 (35%), Gaps = 82/565 (14%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGLLTSSASAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD-- 464
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D  
Sbjct: 239 RGEGEKL-AGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVTVDMDHPDIEGYIDWK 297

Query: 465 -------------------------------LRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                                          L      + ++       + + + +++RV
Sbjct: 298 VNEEQKVAALVTGSKICQKHLTAVMAAAQSGLDPKENKELKKAILAARKDQVSENYIQRV 357

Query: 494 TQ--------------NAGWTLFSPDEVSDLHDLYGKEFE------IAYENYERQADRGE 533
            Q              N  W   +   VS  +              +  +       R  
Sbjct: 358 IQFAGQGFTSIEFKTYNTDWDSEAYLTVSGQNSNNSVRISNEFVQAVLDDADWNLIGRTN 417

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            KV + + A  LW K+    +    P + F    N        G +++SN C+E      
Sbjct: 418 GKVVKTVRARDLWDKVGYAAWACADPGVQFDSTINEWHTCPASGRINASNPCSEYMFL-- 475

Query: 594 SEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             +   CNL S+NL++    +  FD +      R    VL+  + +     ++  + ++ 
Sbjct: 476 --DDTACNLASLNLMSFRLKDGSFDVEAFEHACRLWTIVLEISVLMAQFPSKEIAQLSYE 533

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L    + Y S E           ++  A + S E+AQE G +  F+
Sbjct: 534 FRTLGLGFANLGGLLMASGLSYDSDEGRAYCAGISAVMTGVAYATSAEMAQELGTFPGFE 593

Query: 713 ------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G +       ++ +  +A++  +  +   +   WDE  +  +
Sbjct: 594 ANRDHMLRVIRNHRRAANGEMNGYEGLAVEPVPFVADLCPDQELALAAVRVWDEALELGE 653

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    +APT TI  +    +  I+P +  +  K    G +  + + LV E  + 
Sbjct: 654 AHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIVNRLVPEALKT 713

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             +    I  +  +    G +   P
Sbjct: 714 LGYTPDQIEQIALYAVGHGTLRNAP 738



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           ++     + D+   +   A          +     I   +  Q +I  A S  + +    
Sbjct: 823 TLEGAPFLKDEHLAVFDCANPCGRIGKRFLSWESHITMMAAAQPFISGAISKTINMPNTA 882

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  +    Y  +W +GLK    Y   S+ +  ++ + L   +       V +  ++  +
Sbjct: 883 TVDECKDAYLMSWRLGLKANALYRDGSKLSQPLQAALLDDEEDGEAVEAVIEAPAAVRA 941


>gi|40965509|gb|AAR97976.1| B12-dependent ribonucleoside diphosphate reductase [Corynebacterium
           nephridii]
          Length = 1260

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 217/572 (37%), Gaps = 89/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 WQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG         GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D +
Sbjct: 239 RGE-GEELSGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWK 297

Query: 467 KNTGDDR----------------------------------------RRTHDMNTANWIP 486
                                                          +R       N +P
Sbjct: 298 VKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVP 357

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           + ++KRV Q       +  +  +  D  S+ +                EF  A EN    
Sbjct: 358 ENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + +V + + A  LW K+    + +  P + +    N        G + +SN C+
Sbjct: 418 NLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL SINLL +   +  FD      T R    VL+  + +     ++
Sbjct: 478 EYMFL----DDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKE 533

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A+E 
Sbjct: 534 IARLSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKEL 593

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + S++                  G         ++ + L+AE   +  M   +R  WD
Sbjct: 594 GTFPSYEPNAEHMLRVIRNHRLAAHGQTEGYEGLAVNPVALIAEDCPDQDMITHARAAWD 653

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 654 KALELGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 713

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V E  +   + E+ I++++ +    GNI + P
Sbjct: 714 VPEALRTLGYSESQIAEIEAYAVGHGNINQAP 745



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPALGFAKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYMLSWKLALK 907

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 908 ANALYRDGSK 917


>gi|209885884|ref|YP_002289741.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
 gi|209874080|gb|ACI93876.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
          Length = 1251

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 120/571 (21%), Positives = 213/571 (37%), Gaps = 90/571 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR-- 466
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVR 299

Query: 467 -----------------------------KNTGDD---------RRRTHDMNTANWIPDL 488
                                        + +GDD          +R   +     + D 
Sbjct: 300 EEQKVAALVTGSKINQKHLKAIMKACVNCEGSGDDCFDPEKNPALKREIKLARRALVTDN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
            +KRV Q       +  +  F  D  S+ +                +F  A E       
Sbjct: 360 MIKRVIQFARQGYTDIQFDTFDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGEWNL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E 
Sbjct: 420 VGRTDGKVRKTLRARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S NLL  +     +FD D      R    VL+  + +     +  
Sbjct: 480 MFL----DDTACNLASANLLTFYDPHTRRFDTDAYEHLCRLWTIVLEISVMMAQFPSKAI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  + +PY S E   +       ++  A + S E+A E G
Sbjct: 536 AELSYEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIMTGTAYATSAEMAAELG 595

Query: 707 AYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +K +                GV        +D + L      +  +   ++  WD 
Sbjct: 596 TFPGYKKNAKHVLRVIRNHRRAAHGVAVGYEALAVDPVPLDHASCPQADIVEHAKAVWDR 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +T G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALELGETNGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            E  +   + E+ I++++ +    G++   P
Sbjct: 716 PEALRALGYRESEIAEIEAYAVGHGSLSNAP 746



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++++++    V+N+   + L         + +   +  G  ++     + D+   +   
Sbjct: 789 FIRNSLNIAPEVMNAPGFDLLVALGFSKRDIEAANVHICGAMTVEGAPHLKDEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVEDCKNAYLLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|149203728|ref|ZP_01880697.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
 gi|149142845|gb|EDM30887.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
          Length = 1226

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 145/745 (19%), Positives = 256/745 (34%), Gaps = 133/745 (17%)

Query: 216 YAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +++V +  + +K  R+  +    +K ++          PE+  R +          E+  
Sbjct: 47  WSQVASDVIAQKYFRKAGIPNRIEKVKE-------EGVPEFLWRSVPAADNDGFGGETSA 99

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
                 LA    Y                 YF     +R    +  +M  A  +A   + 
Sbjct: 100 KQVFDRLAGAWCYWG-----------WKGGYFTKEADARAYFDEMRYML-ARQMAAPNSP 147

Query: 335 KE----KRAVEFYNLLSSFH----FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--- 383
           +            +  S  H    F     T   S   HPQ  +CF+ +V DDL G    
Sbjct: 148 QWFNTGLHWAYGIDGPSQGHYYVDFQTGELTKSTSAYEHPQPHACFIQSVKDDLVGDGGI 207

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+  G  
Sbjct: 208 MDLWVREARLFKYGSGTGTNFSSLRAEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGT 266

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNT--------------------------------- 469
            R+ A     +  H D++EF++ +                                    
Sbjct: 267 TRRAAKMVICDADHPDIQEFINWKVKEEQKVASIVAGSKMHEQKLNQIFAAIRAWDGSSE 326

Query: 470 -GDDRRRTHDMNTA------NWIPDLFMKRVTQ--------------NAGWTLFSPDEVS 508
              D ++   +  A        IP+ ++KRV                +  W   +   VS
Sbjct: 327 DAVDPKKNEQLKAAIRGAKQVQIPETYVKRVLDYARQGYESIEFPTYDTDWDSEAYASVS 386

Query: 509 DLHDLYGKEFEIAYENYERQ------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +         A+    +        +R +  V + I A  LW  +    +    P I 
Sbjct: 387 GQNSNNSIRVTDAFLKAVKDDADWALINRTDGSVAKTIKARDLWEDVGHAAWACADPGIQ 446

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           + D  N        G +  SN C+E        +   CNL S+NLL  F + +FD D   
Sbjct: 447 YHDTVNAWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASMNLLKFFGDGKFDADAYM 502

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R     L+  + +     ++  + ++  R +GLG       L  +   Y S E   +
Sbjct: 503 HATRLWTVTLEISVTMAQFPSKEIAQLSYEFRTLGLGYANIGGLLMNMGFGYDSDEGRAL 562

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFPID 724
                  ++  A + S E+A E GA++ +K                  G+        + 
Sbjct: 563 CGALTAIMTGVAYATSAEMAGELGAFAGYKRNSKHMLRVIRNHRNAAYGATEGYEGLAVK 622

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
            + L  +   +  +   +   WDE  K  +  G RN+    IAPT TI  +    +  I+
Sbjct: 623 PVPLDHKNCPDARLVDLAMASWDEALKLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIE 682

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI--- 837
           P +  +  K    G +  + +  V    ++  +  A I ++  +    G+IGN   I   
Sbjct: 683 PDFALVKFKKLAGGGYFKIINQSVPAALEKLGYGPAQIEEIVSYAVGHGTIGNAPGINHT 742

Query: 838 --------PDDLKKIHA---TAFEI 851
                   P++L K+ A   +AF+I
Sbjct: 743 SLIGHGFGPNELAKVDAALGSAFDI 767



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDE--AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L           + +D      ++     +  D   +   A            
Sbjct: 793 NDPTFDILAHLGYSKRDVELANDHVCGTMTLEGAPYLKADHYHVFDCANPCGKKGKRYLG 852

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ + 
Sbjct: 853 VESHITMMAAAQSFISGAISKTINMANDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  S ++  D     +    P      L 
Sbjct: 913 PLAASLVEDDDEAAEILESGTPQQKAQVLA 942


>gi|85715492|ref|ZP_01046473.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85697687|gb|EAQ35563.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 1248

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 225/594 (37%), Gaps = 91/594 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKMTKSKSAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+++D +
Sbjct: 239 RGEGERLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQYIDWK 297

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 298 VKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFVPEKNPALRREIKLARRAQVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYE 526
           D ++KRV Q A        + ++  D  S+ +                +F  A E     
Sbjct: 358 DNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 418 NLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E        +   CNL S NL+  +  A+ +FD D    T+R    VL+  + +     +
Sbjct: 478 EYMFL----DDTACNLASANLITFYDTASRRFDVDAYEHTVRLWTVVLEISVLMAQFPSK 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 534 AIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALTAIMTGIAYKTSAEMAGE 593

Query: 705 RGAYSSFKGS------------LWDQG------VFPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+   K +                G         ++ + L      +  +   +   W
Sbjct: 594 LGAFPGHKKNAGHMLRVIRNHRRAAHGQSNGYEALAVNPVPLDHASCPQANLIAHATRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
            V E  +   + E+ I++++ +    G++   P  ++  + A  F  + +  +E
Sbjct: 714 AVPEALRALGYRESEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVE 767



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L           +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGVDADALASPAFDLLAAIGFSRRECEAANVHICGAMTVEGAPHLKAEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVEDCKSAYLLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|114765323|ref|ZP_01444440.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114542303|gb|EAU45332.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 1215

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 143/747 (19%), Positives = 250/747 (33%), Gaps = 112/747 (14%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKE--PNYAKVTARFLLEKLRREVLTTVYKKP 240
            + Y  +    + S++      +   L E E    +++V +  + +K  R+         
Sbjct: 12  QDAYAGIEFVTTTSEIRNPDGSTVFKLDELEVPAKWSQVASDVIAQKYFRKA------GV 65

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL---- 296
                   +   PE+  R +     A    E+        LA    Y   +   Y     
Sbjct: 66  PATLKKVAEKDVPEFLWRSVPADKDAPRGGETSAKQVFDRLAGAWAYW-GWKGGYFTSED 124

Query: 297 GLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
             Q  YD  R+ L    +    PQ F      GL             +Y    S      
Sbjct: 125 DAQAYYDEMRHMLASQTAAPNSPQWFN----TGLHWAYGIDGPGQGHYYVDHKSGKL--- 177

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLG 411
             T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +R   
Sbjct: 178 --TKSKSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAEN 235

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
             +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +    
Sbjct: 236 ERLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWKVKEE 294

Query: 471 D--------------------DRRRTHD----------MNTA----------NWIPDLFM 490
                                D  R  D           NTA            IP+ ++
Sbjct: 295 QKVASIVAGSKMHEKMLNAIFDAIRAWDGLESDAYEANANTALKTAIREAKKVAIPETYI 354

Query: 491 KRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK- 535
           KRV                +  W   +   VS  +         A+    R+    E+  
Sbjct: 355 KRVLDYARQGYASIEFPTYDTDWDSEAYATVSGQNSNNSIRVTDAFLEAVREGRPWELIR 414

Query: 536 -----VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                V + + A  LW ++    +    P I F D  N        G +  SN C+E   
Sbjct: 415 RTDGSVAKTVDAKELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYMF 474

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                +   CNL S+NLL    + QFD +      R     L+  + +     ++  + +
Sbjct: 475 L----DDTACNLASMNLLTFLKDGQFDAESYMHATRLWTLTLEISVLMAQFPSKEIAQLS 530

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+  
Sbjct: 531 YDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTALMTGVSYATSAEIAGELGAFPG 590

Query: 711 FKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           ++ +                          +  + L      + A+   ++  WDE  + 
Sbjct: 591 YERNAEHMLRVIRNHRTAAYGRTDGYEGLSVKPVALDHGNCPDQALVALAKSAWDEALRL 650

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    
Sbjct: 651 GEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSAL 710

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIP 838
           ++  +  + I ++  +    G +   P
Sbjct: 711 EKLGYSSSQIEEIVGYAVGHGTLGNAP 737



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVE 912
            I   +  Q +I  A S  + +    + +     Y  +W +G+K    Y   S+ +  + 
Sbjct: 856 HIHMMAAAQSFISGAISKTINMPNAATVEDCQKAYELSWSLGVKANALYRDGSKLSQPLA 915

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            + ++  D  L  +    P      + 
Sbjct: 916 SALVEDDDDALETLESGTPQEKAQVIA 942


>gi|315231895|ref|YP_004072331.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
 gi|315184923|gb|ADT85108.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
          Length = 1042

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 199/436 (45%), Gaps = 24/436 (5%)

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI-SAVALWRKMLTMLFETGHPW 560
           F P     L D  G+E     E+  +  D        K+   + ++++    + E     
Sbjct: 532 FKPSIKIVLED--GRELTGDEEHKVKVGDNYIELKNIKVGDCIEVFKEGCKKVVEVASVG 589

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
                   ++   ++V    ++++ +         E   CNL SINL      +      
Sbjct: 590 NQLVYTLTMKEVHEYV----ANSIISRNCGEEPLYEYESCNLASINLAKFVKYDDEGKPY 645

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+D+ A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY 
Sbjct: 646 FDWDEYAYVIQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYN 705

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   ++ E+++F+A   SVE A++RG +  +  S + +G  P++           
Sbjct: 706 SKEGFDFMRKATEYLTFYAYKYSVEAAKKRGTFPLYDKSDYPEGKLPVEG---------- 755

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   LPWDEL + +K  G+RN+      PT +++ I   S  I+P +  +Y KS  
Sbjct: 756 FYHREIWNLPWDELAEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 815

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F  V+     ELK+R L+ + +++ +  + GS+  +E IP+D++++  TA ++  + 
Sbjct: 816 VGEFYYVDPVFEAELKKRGLYSDELLAKISNNYGSVQGLEEIPEDMQRVFVTAMDVHWLD 875

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            I + +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S  SV+  
Sbjct: 876 HILAQASIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSL-SVQVY 934

Query: 915 TLKGVDGKLNAVPVTD 930
           +++G   K      ++
Sbjct: 935 SVEGEKKKRVPAKPSE 950



 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/622 (19%), Positives = 237/622 (38%), Gaps = 107/622 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A   V        +R + ++  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDEGRIRWAIQRAMWEVG-------VRDEKLLDKVVKDVVGRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G   + + Y+LYR++++++R  +                 
Sbjct: 57  GKIPHIENIQDIVELELMRNGLFDVAKAYILYRKKKAEIREEKKKI-------------- 102

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                   N  +L+ I +        +++  VL+  Y      +   +    +I S R L
Sbjct: 103 -------LNKDKLDEIDKRFS-----INALRVLASRYL-----MKNEE--GKIIESPREL 143

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E+    A +      +++         K+   A   +    Y E+   + ++    R  
Sbjct: 144 FERVAILAVIPDLLYDDRV-------FSKEGGFAQDLKRVDYYREHLDEFDKKLSIGRFK 196

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
                    + L  +L  +        G   +            ++M +           
Sbjct: 197 LNKYHFERFLSLYQELAEK--------GQMKV-------SIDEIVKMLED---------- 231

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
               + EK   E++ L+++  FM +TP L N+G     LS+CF+  + DD+  I  A  +
Sbjct: 232 GAFDKYEKEIEEYFRLMTNQIFMPNTPALINAGRPLGMLSACFVVPIEDDMESIMKAAHD 291

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA  
Sbjct: 292 VAMIQKMGGGTGVNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANM 351

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             LE WH D+E+F+  ++          + N +  I + F + + +   + L +P     
Sbjct: 352 GILEVWHPDIEKFIHAKEKNIG-TNVLSNFNISVGIWEDFWEALKEGRKYPLINPRTGK- 409

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                       R++   AL+ ++  M +    P + F D  N 
Sbjct: 410 --------------------------KVREVDPKALFEELAYMAWAKADPGVVFFDVINR 443

Query: 570 RSPQ-QHVG-VVHSSNLC--TEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLAST 624
           R+   +  G  + ++N C   +  + +   E  +  L  +   A+       D   L   
Sbjct: 444 RNVLEKAKGQKIRATNPCVVGDTRILTEKGEIEIEKLFELAKEANIDRLEVLDEGALGER 503

Query: 625 IRTAVRVL-DNVIDINCHTIEK 645
                 +L   VI  N   +E 
Sbjct: 504 AEKYAYLLPFKVIASNGKPVEA 525


>gi|260426808|ref|ZP_05780787.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
 gi|260421300|gb|EEX14551.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
          Length = 1213

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 134/748 (17%), Positives = 245/748 (32%), Gaps = 114/748 (15%)

Query: 183 SETYKNMYDGLSESDLETALIFSS--RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
            + Y  +    + S++      +      +E    +++V +  + +K  R+         
Sbjct: 12  QDAYAGIEFVTTSSEIRNPDGSTVFKLEKLEVPARWSQVASDVIAQKYFRKA------GV 65

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             A     +   PE+  R +          E+        LA    Y             
Sbjct: 66  PDALKKVSEKDVPEFLWRSVPANSDTPRGGETSAKQVFDRLAGAWAYWG----------- 114

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS----FHFM---C 353
               YF     +R    +   M  +   A    +     + +   +       +++    
Sbjct: 115 WKGGYFTTEEDARAYYDEMRHMLASQTAAPNSPQWFNTGLHWAYGIDGPGQGHYYVDHKT 174

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  
Sbjct: 175 GKLTRSKSAYEHPQPHACFIQSVADDLVSDGGIMDLWVREARLFKYGSGTGTNFSSLRAE 234

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +   
Sbjct: 235 GERLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWKVKE 293

Query: 470 GD--------------------DRRRTHD----------MNTAN----------WIPDLF 489
                                 D  R  D           N A            IP+ +
Sbjct: 294 EQKVASIVAGSKMHEQMLNAIFDAIRAWDGLESDAYEASANIALKKAIREAKKLAIPETY 353

Query: 490 MKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYER------QA 529
           +KRV                +  W   +   VS  +         A+    R        
Sbjct: 354 IKRVLDYARQGYASIEFPTYDTDWDSEAYATVSGQNSNNSIRVTDAFLEAVRTGAPWELV 413

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            R +  V + + A  LW ++    +    P I F D  N        G +  SN C+E  
Sbjct: 414 RRTDGSVAKTVDARELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYM 473

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +   CNL S+NLL    +  FD +      R     L+  + +     ++  + 
Sbjct: 474 FL----DDTACNLASMNLLTFLKDGSFDAETYMHATRLWTLTLEISVLMAQFPSKEIAQL 529

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E GA+ 
Sbjct: 530 SYDFRTLGLGYANIGGLLMNMGYSYDSDEGRALCGALTAIMTGVSYATSAEIAGELGAFP 589

Query: 710 SFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++ +                          +  + L      + A+   ++  WDE  +
Sbjct: 590 GYERNAEHMLRVIRNHRTAAYGRTDGYEGLQVKPVALDHGNCPDKALVALAKSAWDEALR 649

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V   
Sbjct: 650 LGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSA 709

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIP 838
             +  +  + + ++  H    G +   P
Sbjct: 710 LAKLGYSSSQVEEIVGHAVGHGTLGNAP 737



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 49/163 (30%), Gaps = 13/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + +  +      ++    + L+        +   +D      ++     + D+   +   
Sbjct: 780 FCRETLGIPADKLSDPTFDLLRHLGFSKAEIDAANDHVCGTMTLEGAPFLKDEHLAVFDC 839

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A                I   +  Q +I  A S  + +    + +     Y  +W +G+K
Sbjct: 840 ANPCGKKGKRYLSVNSHIHMMAAAQSFISGAISKTINMPNSATVEDCQKAYELSWSLGVK 899

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
               Y   S+ +  +  + ++  D  L  +    P      + 
Sbjct: 900 ANALYRDGSKLSQPLAAALVEDDDDALEVLESGTPQEKAQVIA 942


>gi|298291309|ref|YP_003693248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
 gi|296927820|gb|ADH88629.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
          Length = 1241

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 131/639 (20%), Positives = 234/639 (36%), Gaps = 103/639 (16%)

Query: 318 QAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHF----MCSTPTLFNSGTRHPQLS 369
           +  FM  AM +A   + +            +  S  HF         T   +   HPQ  
Sbjct: 139 EHRFML-AMQMAAPNSPQWFNTGLHWAYGIDGPSQGHFYVDYATGKLTRSKTSYEHPQPH 197

Query: 370 SCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +CF+ +V DDL    GI       A L KY  G G++++ +RG G  +    G+S G++ 
Sbjct: 198 ACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRGEGERLS-GGGRSSGLMS 256

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG--------------- 470
           FLK+ +  A A+  G   R+ A    ++  H D+E ++D +                   
Sbjct: 257 FLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYVDWKVKEEQKVAALVTGSKTVAK 316

Query: 471 ---------------DDRRRTHDMNTAN----------WIPDLFMKRVTQ-------NAG 498
                          DD     + N A            +P+ +++RV Q       +  
Sbjct: 317 HMKAVMKACVNCEGEDDDCFEPEKNPALKREIRAAKRAQVPENYIRRVIQFARQGYTDID 376

Query: 499 WTLFSPDEVSDLH---------------DLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           + ++  D  S+ +               D +    E   E       R   KV + + A 
Sbjct: 377 FPIYDTDWDSEAYLTVAGQNSNNSVRVDDAFLTAVEADGEW--NLTSRTTGKVTKTLKAA 434

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW K+    + +  P I F    N        G + +SN C+E        +   CNL 
Sbjct: 435 ELWEKIGYAAWASADPGIQFHTTINDWHTSPAGGPIRASNPCSEYMFL----DDTACNLA 490

Query: 604 SINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NLL    A+  FD +      R    VL+  I +     ++  K ++ +R +GLG   
Sbjct: 491 SLNLLQFRNADGTFDVESYEHACRLWTVVLEISILMAQFPSKEIAKLSYDYRTLGLGYAN 550

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-------- 714
               L    IPY S E           ++  + + S E+A+E G +  +K +        
Sbjct: 551 IGGLLMTSGIPYDSEEGRAYCGALTAIMTGVSYATSAEMAKELGPFPEYKPNATHMLRVI 610

Query: 715 ----LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
                   G          + + L      E  +   ++  WD      +  G RN+   
Sbjct: 611 RNHRRAAYGEHGGYEGLATNPVPLDHAKVPEAILVDHAKAAWDRALALGEEHGYRNAQTT 670

Query: 765 AIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            +APT TI  +    +  I+P +  +  K    G +  + +  V E  +   + E+ I++
Sbjct: 671 LLAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAE 730

Query: 824 LKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESAS 861
           ++ +    G+I + P  +   + A  F+   +  I++ +
Sbjct: 731 IEVYAVGHGSITQAPAINHSTLRAKGFDDAMLAKIDAGA 769



 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q ++  A S  + + +E + +     Y  +W + LK    Y   S+
Sbjct: 861 KSHIFMMAAAQPFLSGAISKTINMPNEATVEDCKEAYLLSWRLALKANALYRDGSK 916


>gi|99080992|ref|YP_613146.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99037272|gb|ABF63884.1| ribonucleoside-diphosphate reductase class II [Ruegeria sp. TM1040]
          Length = 1217

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 148/749 (19%), Positives = 258/749 (34%), Gaps = 129/749 (17%)

Query: 210 IEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           IE    +++V +  + +K  R+  + +  KK ++          PE+  R +       L
Sbjct: 41  IEVPSTWSQVASDVIAQKYFRKAGVPSRLKKVREKG-------VPEFLWRSVPADDNVEL 93

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAFFM 322
             E+        LA    Y   +   Y       +  +D  RY L    +    PQ F  
Sbjct: 94  GGETSSKQVFDRLAGAWTYW-GWKGGYFSSEEDARAYFDEMRYMLATQRAAPNSPQWFN- 151

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY- 381
               GL              Y       +     T  +S   HPQ  +CF+ +V DDL  
Sbjct: 152 ---TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVQ 203

Query: 382 --GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
             GI       A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+ 
Sbjct: 204 DGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEKLS-GGGKSSGLMGFLKIGDRAAGAIK 262

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------- 473
            G   R+ A    ++  H D+E+F++ +                                
Sbjct: 263 SGGTTRRAAKMVIVDADHPDIEQFIEWKVLEEQKVASIVAGSKMHEKMLNGIFEALRTWD 322

Query: 474 ---------------RRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLH 511
                          ++         IP+ ++KRV   A        +  +  D  S+ +
Sbjct: 323 GLSEDAYDPAENPALKKAIREAKKVAIPETYIKRVLDYARQGYDSIEFPTYDTDWDSEAY 382

Query: 512 DLYGK-----------EFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                            F  A E        +R + +V + + A  LW K+    +    
Sbjct: 383 SSVSGQNSNNSIRVTNAFLHAVEKDADWELINRTDGQVAKTVKARDLWEKVGHAAWACAD 442

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P I F D  N        G +  SN C+E        +   CNL S+NLL  +    F  
Sbjct: 443 PGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASLNLLTFYQGGVFQA 498

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +      R     L+  + +     ++  + ++  R +GLG       L  +   Y S E
Sbjct: 499 EDFMHASRLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDE 558

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQGV 720
              +       ++  A + S E+A E G ++ ++                  G+      
Sbjct: 559 GRALCGSLTAIMTGVAYATSAEIASELGPFAGYERNADHMLRVMRNHRNAAYGATEGYDK 618

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
             +  + L  +   +  +   +   WDE  +  +  G RN+    IAPT TI  +    +
Sbjct: 619 LTVKPVPLDLQNCPDARLTELAMSAWDEAVRLGEEHGYRNAQSTVIAPTGTIGLVMDCDT 678

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIER 836
             I+P +  +  K    G +  + +  V    +   +  A I ++  +    GSIGN   
Sbjct: 679 TGIEPDFALVKFKKLAGGGYFKIINRSVPSALEGLGYSSAQIEEIVSYAVGHGSIGNAPG 738

Query: 837 I-----------PDDLKKIHA---TAFEI 851
           I           P++L K+ A   +AF+I
Sbjct: 739 INHTSLTGHGFGPNELAKVDAALESAFDI 767



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+        +   +D      ++     + ++   I   A            
Sbjct: 793 NDPAFDLLRHLGFSKADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKRYLG 852

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I+  +  Q +I  A S  + + +  + +     Y  +W +G+K    Y   S+ + 
Sbjct: 853 VESHIKMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  D     +           L 
Sbjct: 913 PLAAALVEDDDEAAEVLESGSVPEKAAVLA 942


>gi|114769378|ref|ZP_01447004.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
 gi|114550295|gb|EAU53176.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
          Length = 1216

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 155/816 (18%), Positives = 274/816 (33%), Gaps = 132/816 (16%)

Query: 183 SETYKNMYDGL----SESDLET--ALIFSSRTLIEKEPNYAKVTARFLLEK-LRREVLTT 235
           ++  ++ Y G+    + S++      I  S   +E   ++++V +  + +K  R+  ++ 
Sbjct: 8   TKANQDAYAGIAFHKTTSEIRNPNGSIVFSLDDVEVPESWSQVASDVIAQKYFRKAGVSN 67

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE--RDFAF 293
              + ++    E          + ++       L E+        LA    Y   +   F
Sbjct: 68  DLIRVEENDVPEFLWRSAPRDGQQVKP--NGEYLGETSSKQVFNRLAGAWAYWGWKGGMF 125

Query: 294 -EYLGLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
                 Q  YD  RY L    +    PQ F      GL              Y       
Sbjct: 126 DTEADAQSYYDEMRYMLAAQMTAPNSPQWFN----TGLHWAYGIDGPSQGHHY-----VD 176

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F        NS   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +
Sbjct: 177 FKTGVMVQSNSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSL 236

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG      G  GKS G++ FLK+ +  A A+  G   R+ A     +  H DVEEF+  +
Sbjct: 237 RGS-DESLGGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDVEEFISWK 295

Query: 467 KNTGDDRR-----------RTHDMNTA-----------------------------NWIP 486
                              + +++ +A                               IP
Sbjct: 296 VKEEQKVASLVAGSKLHELKLNEIFSAIRSWDGAEEDAFDPKVNANLKAAVKSAKKVMIP 355

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENYE-- 526
           + ++ RV Q A        +  +  D  S+ ++                F  A +N E  
Sbjct: 356 ETYVNRVLQYARQGYSSIEFPSYDVDWDSEAYNTVAGQNSNNSVRVTDAFLKAVQNDEDW 415

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R + KV + + A  LW  +    +    P + + D  N        G +  SN C+
Sbjct: 416 ELIRRTDGKVSKTVKAKELWEDVGHAAWACADPGVQYHDTINAWHTCPEDGQIRGSNPCS 475

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL  F + +FD D      R     L+  + +     E  
Sbjct: 476 EYMFL----DDTACNLASMNLLKFFKDGEFDADAYMHATRLWTITLETSVLMAQFPSEAI 531

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  + + Y S E   +       ++  +   S E+A+E G
Sbjct: 532 ARGSYDFRTLGLGYANIGGLLMNMGLSYDSDEGRSMCAALTALMTGISYKTSAEMAKELG 591

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +                   G         +  + L A+   +  +   ++  W+E
Sbjct: 592 PFPGYAKNSQHMLRVMRNHKRAAFGKKAGYEGLEVKPVPLDAKNCPDRNLIDLAKTSWEE 651

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 652 AVQLGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 711

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                   +  A   ++  +    G +   P                  I   +      
Sbjct: 712 PAALATMGYGSAEAEEIISYAVGHGTMGNAPG-----------------INHTALIGHGF 754

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMG---LKTT 900
            Q +   +    PS   + F++ Q W +G    K T
Sbjct: 755 SQVEIDKVEAALPSAFDIRFVFNQ-WTLGEEFCKGT 789



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + K  +     ++N+   + L       +  I     H      +E  P  LK+ H   F
Sbjct: 785 FCKGTLGIPDELLNNPTFDLLSHLGF-SKKQIEHANNHVCGTMTLEGAP-HLKEEHYGVF 842

Query: 850 E------------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
           +            +     I   +  Q +I  A S  + + ++ + +     Y  +W +G
Sbjct: 843 DCANVCGRIGTRYLSVESHITMMAAAQSFISGAISKTINMPNDATIEDCQAAYELSWSLG 902

Query: 897 LKTTYYLRSRSATSVEKST 915
           +K     R  S  S   S+
Sbjct: 903 VKANALYRDGSKLSQPLSS 921


>gi|92117612|ref|YP_577341.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91800506|gb|ABE62881.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           hamburgensis X14]
          Length = 1263

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 129/641 (20%), Positives = 229/641 (35%), Gaps = 100/641 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L         PQ F      GL             +Y       F     T   S  
Sbjct: 141 RYMLARQMVAPNSPQWFN----TGLHWAYGVDGPGQGHYY-----VDFKTGKMTRSKSSY 191

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG G  +    G+
Sbjct: 192 EHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGR 250

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR------------- 466
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +             
Sbjct: 251 SSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKEEQKVAALVTG 310

Query: 467 ------------------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ---- 495
                             + +GDD          RR   +     + D  +KRV Q    
Sbjct: 311 SKLNQKHLKAIMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVNDNVIKRVIQYARQ 370

Query: 496 ---NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRK 539
              +  + ++  D  S+ +                +F  A E         R   KV + 
Sbjct: 371 GYKDIDFPVYDTDWDSEAYLTVSGQNSNNSVSLRDDFLRAVETDGDWNLIGRTNKKVMKT 430

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    + +  P + F    N     +  G + +SN C+E        +   
Sbjct: 431 LKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTA 486

Query: 600 CNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           CNL S NL+  +     +FD D      R    VL+  + +     +   + ++  R +G
Sbjct: 487 CNLASANLITFYDTALKRFDVDAYEHVCRLWTVVLEISVLMAQFPSKAIAELSYEFRTLG 546

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL-- 715
           LG       L  + +PY S E   +       ++  A   S E+A E GA+  +K +   
Sbjct: 547 LGFANIGGLLMTMGLPYDSKEGRALCGALTAIMTGIAYKTSAEMAGELGAFHGYKKNTGH 606

Query: 716 ----------------WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
                                  ++ + L      +  +   +   WD+     +  G R
Sbjct: 607 MLRVIRNHRRAALGQSHGYEALAVNPVPLDHASCPQADLIVHATKAWDDALALGEQHGYR 666

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+    +APT TI  +    +  I+P +  +  K    G +  + +  V E  +   + E
Sbjct: 667 NAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPEALRVLGYRE 726

Query: 819 AMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
           + I++++ +    G++   P  ++  + A  F  + +  +E
Sbjct: 727 SEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVE 767



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGIDSETIASPTFDLLAAVGFSKREIEAANVHICGAMTVEGAPHLKAEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|328543987|ref|YP_004304096.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326413730|gb|ADZ70793.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 1229

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/627 (20%), Positives = 221/627 (35%), Gaps = 100/627 (15%)

Query: 298 LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            +  YD  RY L         PQ F      GL             +Y       F    
Sbjct: 133 ARAFYDELRYMLATQKVAPNSPQWFN----TGLHWAYGIDGPSQGHYY-----VDFQTGE 183

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G 
Sbjct: 184 LTKSASAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRLRGEGE 243

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++ +     
Sbjct: 244 RLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIESYINWKVKEEQ 302

Query: 472 DR----------------------------------------RRTHDMNTANWIPDLFMK 491
                                                     +R         +P+ +++
Sbjct: 303 KVAALVTGSRICQKHLSAIMKACVNCQADNDDCFDPAKNPALKREIRAAKKMMVPENYIR 362

Query: 492 RVTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADR 531
           RV Q A        +  +  D  S+ +     +               +  +       R
Sbjct: 363 RVIQFARQGYTAIEFPTYDTDWDSEAYLTVSGQNSNNSVRVTDGFLSAVVTDGSWDLTAR 422

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            + KV + I A  LW ++    + +  P I +    N        G + +SN C+E    
Sbjct: 423 RDGKVMKTIKARELWEQIGYAAWASADPGIQYHTTINDWHTCPASGEIRASNPCSEYMFL 482

Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               +   CNL S+NLL    A+  FD +      R    VL+  + +      +  + +
Sbjct: 483 ----DDTACNLASLNLLQFRRADRSFDVEAYEHATRLWTIVLEISVLMAQFPSREIAELS 538

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L    IPY S E   I       ++  A + S E+A E GA+  
Sbjct: 539 YRFRTLGLGYANIGGLLMTSGIPYDSAEGRAICGALTAIMTGVAYATSAEMAGELGAFPG 598

Query: 711 FKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +  +                G          + + L      +  +   +R  WD   + 
Sbjct: 599 YAENAEHMLRVMRNHRRAAYGEVDGYEKLHTNPVPLDHASCPDKVLIERARAAWDRALEL 658

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  
Sbjct: 659 GEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEAL 718

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIP 838
           +   + E+ I++++ +    G+I++ P
Sbjct: 719 RVLGYSESQIAEIEAYAVGHGSIDQSP 745



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
            I   +  Q +I  A S  + + +E + +     Y  +W + LK    Y   S+
Sbjct: 863 HIRMMAAAQPFISGAISKTINMPNEATVEDCKEAYMLSWRLALKANALYRDGSK 916


>gi|118590077|ref|ZP_01547481.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
 gi|118437574|gb|EAV44211.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
          Length = 1227

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 130/636 (20%), Positives = 223/636 (35%), Gaps = 100/636 (15%)

Query: 298 LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            Q  YD  RY L         PQ F      GL             FY       F    
Sbjct: 133 AQAFYDELRYMLATQKVAPNSPQWFN----TGLHWAYGIDGPGQGHFY-----VDFQSGK 183

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
                S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR  G 
Sbjct: 184 LVKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHVRAEGE 243

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD------- 464
            +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++       
Sbjct: 244 RLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYINWKVKEEQ 302

Query: 465 -------------------------LRKNTGDDR--------RRTHDMNTANWIPDLFMK 491
                                       + GD          +R         +P+ +++
Sbjct: 303 KVAALVTGSKICQKHLSAIMRACVNCEADNGDCFDPAKNPALKREIRAAKKMMVPENYIQ 362

Query: 492 RVTQNA-------GWTLFSPDEVSDLH------------DLYGKEFEIAYENYERQAD-R 531
           RV Q A        +  F+ D  S+ +             +         E+       R
Sbjct: 363 RVIQFARQGFTKIEFPTFNTDWDSEAYLTVAGQNSNNSVRVTDGFLNAVVEDSTWDLTAR 422

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V + + A  LW ++    + +  P + +    N        G + +SN C+E    
Sbjct: 423 RTGDVLKTVKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASNPCSEYMFL 482

Query: 592 SSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               +   CNL S+NL+     ++ FD D     +R    VL+  + +     ++  + +
Sbjct: 483 ----DDTACNLASLNLMQFRREDRSFDIDNYEHAVRLWTIVLEISVLMAQFPSKEIAELS 538

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L    IPY S E   +       ++  A + S E+A E GA+  
Sbjct: 539 YKFRTLGLGYANIGGLLMTSGIPYDSDEGRALCGALTAVMTGVAYATSAEMAGELGAFPG 598

Query: 711 FK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +K                  G            + L      +  +   ++  WD   + 
Sbjct: 599 YKKNANHMLRVMRNHRRAAYGEAEGYEGLNTAPVALDHASCPDKVLIERAQKAWDRALEL 658

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  
Sbjct: 659 GEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEAL 718

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           ++  + E+ I +++ +    G+I++ P        T
Sbjct: 719 RKLGYSESEIGEIEAYAVGHGSIDQAPGVNPSALKT 754



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W + LK    Y   S+
Sbjct: 889 TVEDCKEAYMLSWKLALKANALYRDGSK 916


>gi|85703576|ref|ZP_01034680.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
 gi|85672504|gb|EAQ27361.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
          Length = 1226

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 135/715 (18%), Positives = 239/715 (33%), Gaps = 116/715 (16%)

Query: 216 YAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +++V +  + +K  R+  +    +K ++          PE+  R +          E+  
Sbjct: 47  WSQVASDVIAQKYFRKAGIPNRIEKVKE-------EGIPEFLWRSVPAADNDGFGGETSA 99

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
                 LA    Y                 YF     +R    +  +M  A  +A   + 
Sbjct: 100 KQVFDRLAGAWCYWG-----------WKGGYFTKEADARAYFDEMRYML-ARQMAAPNSP 147

Query: 335 KE----KRAVEFYNLLSSFH----FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--- 383
           +            +  S  H    F     T   S   HPQ  +CF+ +V DDL G    
Sbjct: 148 QWFNTGLHWAYGIDGPSQGHYYVDFQSGELTKSASAYEHPQPHACFIQSVKDDLVGDGGI 207

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G +++ +RG G  +    GKS G++ FLK+ +  A A+  G  
Sbjct: 208 MDLWVREARLFKYGSGTGTNFSSLRGEGERLS-GGGKSSGLMGFLKIGDRAAGAIKSGGT 266

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNT--------------------------------- 469
            R+ A     +  H D++EF++ +                                    
Sbjct: 267 TRRAAKMVICDADHPDIQEFINWKVKEEQKVASIVAGSKMHEQKLNEIFAAIRAWDGSSE 326

Query: 470 -------GDDRRRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVS 508
                   D  +          IP+ ++KRV                +  W   +   VS
Sbjct: 327 DSVDPKKNDQLKSAIRSAKQVQIPETYVKRVLDYAKQGYESIEFPTYDTDWDSEAYASVS 386

Query: 509 DLHDLYGKEFEIAYENYERQ------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +         A+    +        +R +  V + I A  LW  +    +    P I 
Sbjct: 387 GQNSNNSIRVTDAFLKAVKDDADWALINRVDGSVAKTIKARDLWEDVGHAAWACADPGIQ 446

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           + D  N        G +  SN C+E        +   CNL S+NLL  + + +FD D   
Sbjct: 447 YHDTVNAWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASMNLLKFYVDGKFDADAYM 502

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R     L+  + +     ++  + ++  R +GLG       L  +   Y S E   +
Sbjct: 503 HATRLWTVTLEISVTMAQFPSKEIAQLSYEFRTLGLGYANIGGLLMNMGFGYDSDEGRAL 562

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFPID 724
                  ++  A + S E+A E GA++ +K                  G+        + 
Sbjct: 563 CGALTAIMTGVAYATSAEMAAELGAFAGYKRNSKHMLRVIRNHRNAAYGATEGYEALAVK 622

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
            + L  +   +  +   +   WDE  K  +  G RN+    IAPT TI  +    +  I+
Sbjct: 623 PVPLDHKNCPDARLVDLAMASWDEALKLGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIE 682

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           P +  +  K    G +  + +  V    ++  +  A I ++  +    G I   P
Sbjct: 683 PDFALVKFKKLAGGGYFKIINQSVPAALEKLGYGPAQIEEIVSYAVGHGTIGNAP 737



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 13/160 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDL--WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +      +N    + L        D  + +D      ++     +  D   +   A  
Sbjct: 783 KVLGIPNEKLNDPTFDLLAHLGYSKRDIELANDHVCGTMTLEGAPYLKTDHYHVFDCANP 842

Query: 851 IDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--T 899
                         I   +  Q +I  A S  + + ++ S       Y  +W +G+K   
Sbjct: 843 CGKKGKRYLGVESHITMMAAAQSFISGAISKTINMANDASIVDCQKAYELSWSLGVKANA 902

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            Y   S+ +  +  S ++  D     +    P      L 
Sbjct: 903 LYRDGSKLSQPLAASLVEDDDEAAEILESGTPQQKAQVLA 942


>gi|294101134|ref|YP_003552992.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
 gi|293616114|gb|ADE56268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
          Length = 858

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 160/759 (21%), Positives = 279/759 (36%), Gaps = 158/759 (20%)

Query: 280 YLANDLKYERDF---------AFEYLGLQILYDRYFLH-----INGSRIE-MPQAFFMRV 324
                  +E D                  +L  RYF+H       G R E   + F  RV
Sbjct: 4   EFNQRFDHEIDLDVLEHPAEPRLSENATWLLAQRYFIHRYDEEEGGVRQERSFEEFARRV 63

Query: 325 AMGLALKETEK------------EKRAVEFYNLLSSFHFMCSTPTLFNSG---------- 362
           A  +A  ET              +      +N + +  F+ ++P LF +G          
Sbjct: 64  ARIIASAETLYLDKNDAKSLLWLQTLEKNIFNDILNRRFLFNSPCLFGAGAGMTTDPKLS 123

Query: 363 ----------------------TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
                                 T++ QL +CF+  +PD + GIF ++++ ++++K+ GG+
Sbjct: 124 TLVYKSPDHMTFEEYETLLASKTKNQQLFACFVIDIPDSIEGIFDSVKDASIISKFGGGV 183

Query: 401 GNDWTPVRGLGAHIHGTNGKS-QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           G ++  +R  GA I+G  G    G I F++  N     V QGGKR+ A+   L   H D+
Sbjct: 184 GGNFGWLREKGAGINGGTGGQASGPISFMETWNTMGSVVVQGGKRRAALMGMLFDNHPDI 243

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +F+D +     +  +    N +  + D  +K V +   + L S                
Sbjct: 244 MDFIDAKT----EENKLSYFNISVCVSDALLKAVEEEGDFPLIS---------------- 283

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVG 577
                      R +  V + + A  LW K+    ++ G P + F D  N  +  +     
Sbjct: 284 -----------RIDGSVAKTVKAKDLWNKLSESAWKRGDPGVFFIDRANADNLLKLDPEW 332

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLD 633
            + S+N C E  L + +     CNLGSIN+ A   +      FD D     +  ++  LD
Sbjct: 333 RIESTNPCGEQPLPNYTS----CNLGSINVEAFVTSKGGLPAFDTDGFVDQVYRSIYYLD 388

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            VID   + + + ++     R +GLG+MG   A  LL + Y      E      E ++  
Sbjct: 389 LVIDACSYPLPRIEERTKRIRPVGLGVMGLADAAILLGMRYGGERFDEYCTSLGESMAAA 448

Query: 694 AISASVELAQERGAYSSFKGS----------------------LWDQGVFPIDSIGLLAE 731
           A+ A+ E+    G    F  S                       W +     D I L+A 
Sbjct: 449 ALCATEEIVSVIGKAP-FDESHLVKDLFHKFRDETGQKELFTAEWLKSTTIEDIISLIAL 507

Query: 732 VRD------------ELAMNRTSRLPWDELKKRVKTI-------GMRNSNCMAIAPTATI 772
           +R             E  +N       +E   +VK +        +RNS  ++IAPT +I
Sbjct: 508 MRGSETVPYTLINAIESIVNNEGLGSEEERLAKVKDVLKALESGQIRNSRRLSIAPTGSI 567

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   S  I+P++   + +  +  D        + E   + L  E +  +LK   G I 
Sbjct: 568 SMLMDTSSGIEPNFAWTWTRRIIKKDGEG---HELREFCHKLL-SEELHQELK-QTGCIS 622

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
           +           + TA++I     +       ++ID   S  + L      + +  +Y  
Sbjct: 623 DPT---------YVTAYDISTDEHVAVTGIFSRYIDSGISKTVNLPYSADVEDVQKVYEM 673

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
            + +G K     R  S ++      K  +G  +   V  
Sbjct: 674 CYKLGTKGITIYRDGSRSAQPIEVKKKEEGVPHTSKVKQ 712


>gi|220925864|ref|YP_002501166.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium nodulans ORS 2060]
 gi|219950471|gb|ACL60863.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium nodulans ORS 2060]
          Length = 1243

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/572 (21%), Positives = 214/572 (37%), Gaps = 92/572 (16%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGVLTKSASAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR-- 466
               +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H DVE F+D +  
Sbjct: 241 ENEKL-AGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEAFIDWKVK 299

Query: 467 -----------------------------KNTGD---DRRRTHDMNTAN------WIPDL 488
                                        +  GD   D  R   +           +PD 
Sbjct: 300 EEQKVAALVTGSKVAAKHLKAVMRACVNCEAEGDACFDPERNPALKREVKAARRAMVPDA 359

Query: 489 FMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE---NYER 527
           ++KRV Q+A        + +F  D  S+ +                EF  A E   ++  
Sbjct: 360 YIKRVIQSARQGATEVDFPVFDTDWDSEAYLTVSGQNSNNSVSLTDEFLRAVEADGDWPL 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +A  G  KV + + A  LW K+    + +  P + F    N        G + +SN C+E
Sbjct: 420 KARIG-GKVTKTLKARDLWDKIGAAAWASADPGLHFNTTMNDWHTCPAGGRIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S NLLA +      FD +      R    VL+  + +      +
Sbjct: 479 YMFL----DDTACNLASANLLALYDRTTKTFDVEAYEHLCRLWTVVLEISVTMAQFPSRE 534

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
               ++ +R +GLG       L  + +PY S E   +A      ++  A + S E+A+E 
Sbjct: 535 IADLSYKYRTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAEMAREL 594

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +++                  G            + L      +  +   +   WD
Sbjct: 595 GPFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLSTRPVPLDHAACPQRNLVAHATQAWD 654

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
                 +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 655 RALALGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 714

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           V +  +   + E+ I++++ +    G++ + P
Sbjct: 715 VPDALRALGYRESEIAEIEAYAVGHGSLGQAP 746



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     YR +W +GLK    Y   S+
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCKEAYRLSWTLGLKANALYRDGSK 918


>gi|163742806|ref|ZP_02150191.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161384061|gb|EDQ08445.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 1214

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 131/648 (20%), Positives = 226/648 (34%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y       +     T  +S  
Sbjct: 134 RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSDSAY 184

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  +    GK
Sbjct: 185 EHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEPLS-GGGK 243

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT---------- 469
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F+D +             
Sbjct: 244 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIDWKVIEEQKVASIVAG 303

Query: 470 ------------------------------GDDRRRTHDMNTANWIPDLFMKRVTQNA-- 497
                                          D  ++         IP+ ++KRV   A  
Sbjct: 304 SKMHEKMLNGLFEAIRSWDGAEADAYDPAVNDGLKQAIREAKKVAIPETYVKRVLDYAKQ 363

Query: 498 -----GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRGEIKVFRK 539
                 +  +  D  SD +     +               +  +   +  +R + KV + 
Sbjct: 364 GHTSIEFPTYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVKKDADWQLINRVDGKVAKT 423

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    +    P I F D  N        G +  SN C+E        +   
Sbjct: 424 VKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGSNPCSEYMFL----DDTA 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL    +  F  +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 480 CNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLG 539

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------- 712
                  L  +   Y S E   +       ++  + + S E+A E G ++ ++       
Sbjct: 540 YANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMASELGPFARYEQNASDML 599

Query: 713 -----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                      GS+       +  + L +    +  +   +   WDE  +  +  G RN+
Sbjct: 600 RVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMSSWDEALELGERHGFRNA 659

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               +APT TI  +    +  I+P +  +  K    G +  + +  V        +  A 
Sbjct: 660 QATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDGLGYSPAQ 719

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    G+IGN   I           P +L K+ A   +AF+I
Sbjct: 720 IEEIVSYAVGHGTIGNAPGINHTSLAGHGFGPAELAKVDAALESAFDI 767



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFEIDPMW-- 855
           T +N    + L+        + +   +  GS  +     + ++   I   A         
Sbjct: 790 TKLNDPTFDLLRHLGFGKADIEAANDHVCGSMTLEGAPHLKEEHYHIFDCANPCGKKGKR 849

Query: 856 ------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
                  I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+
Sbjct: 850 YLGVESHILMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 909

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  +  + ++  D     +          +L 
Sbjct: 910 LSQPLAAALVEDDDEAAEVLESGSQQEKAVTLA 942


>gi|75675763|ref|YP_318184.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74420633|gb|ABA04832.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           winogradskyi Nb-255]
          Length = 1265

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 223/594 (37%), Gaps = 91/594 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKLTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+++D +
Sbjct: 239 RGEGERLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQYIDWK 297

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 298 VKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFLPEKNPALRREIKLARRAQVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYE 526
           D ++KRV Q A        + ++  D  S+ +                +F  A E     
Sbjct: 358 DNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 418 NLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E        +   CNL S NL+  +  A+ QFD +    T+R    VL+  + +     +
Sbjct: 478 EYMFL----DDTACNLASANLITFYDTASKQFDVEAYEHTVRLWTVVLEISVLMAQFPSK 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 534 AIAALSYEFRTLGLGFANIGGLLMTMGLSYDSREGRALCGALSAIMTGIAYRTSAEMAGE 593

Query: 705 RGAYSSFKGS------------LWDQG------VFPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+   K +                G         ++ + L      +  +   +   W
Sbjct: 594 LGAFPGHKKNAGHMLRVIRNHRRAAHGQAHGYEALAVNPVPLDHASCPQADLIAHATRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
            V E  +   + E+ I++++ +    G +   P  ++  + A  F  + +  +E
Sbjct: 714 AVPEALRALGYRESEIAEIEAYAVGHGLLSNAPGINVSTLKAKGFTDEAIAKVE 767



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGVDADALASPAFDLLAAIGFSRREIEAANVHICGAMTVEGAPHLRAEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|86138859|ref|ZP_01057431.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
 gi|85824506|gb|EAQ44709.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
          Length = 1215

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 131/726 (18%), Positives = 241/726 (33%), Gaps = 122/726 (16%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
             IE   ++++V +  + +K  R+          +      +   PE+  R +  G    
Sbjct: 39  ENIEVPSSWSQVASDVIAQKYFRKA------GVPENLKKVKEEGVPEFLWRSVPAGKNVP 92

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----R 323
              E+        LA          + Y G       YF + + +R    +   M    R
Sbjct: 93  TGGETSSKQVFDRLAGA--------WTYWG---WKGGYFSNEDDARAYFDEMRHMLATQR 141

Query: 324 VA--------MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            A         GL              Y       +     T   S   HPQ  +CF+ +
Sbjct: 142 AAPNSPQWFNTGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSTSSYEHPQPHACFIQS 196

Query: 376 VPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           V DDL    GI       A L KY  G G +++ +RG G  +    GKS G++ FLK+ +
Sbjct: 197 VADDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEALS-GGGKSSGLMGFLKIGD 255

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------ 473
             A A+  G   R+ A    ++  H D+E+F+  +                         
Sbjct: 256 RAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIQWKVIEEQKVAAIVAGSKMHEKMLNGIF 315

Query: 474 ----------------------RRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSP 504
                                 ++         IP+ ++KRV   A        + ++  
Sbjct: 316 EAIRSWDGVAADAYEPQVNPALKKAVREAKKVAIPETYVKRVLDYAKQGYDSIEFPIYDT 375

Query: 505 DEVSDLHDLYGKEFE-------------IAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           D  S+ +     +               +  +   +  +R + KV + + A  LW K+  
Sbjct: 376 DWDSEAYSSVSGQNSNNSIRVTNAFLHAVKKDADWQLINRTDGKVAKTVKARDLWEKVGH 435

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +    P I F D  N      + G +  SN C+E        +   CNL S+NLL  +
Sbjct: 436 AAWACADPGIQFHDTVNEWHTCPNDGEIRGSNPCSEYMFL----DDTACNLASLNLLTFY 491

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            + +F  +      R     L+  + +     ++  + ++  R +GLG       L  + 
Sbjct: 492 KDGKFQAEDYMHACRLWTVTLEISVTMAQFPSKEIAQRSYDFRTLGLGYANIGGLLMNMG 551

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-------------- 717
             Y S E   +       ++  A + S E+A E GA++ +  +                 
Sbjct: 552 YGYDSEEGRALCGSLTALMTGVAYATSAEMASELGAFAGYAKNADAMLKVIRNHRTAAMG 611

Query: 718 ----QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    +  + L      +  +   +   WDE  +  +  G RN+    IAPT TI 
Sbjct: 612 KATGYEGLSVPPVPLDIAGCPDARLADLAMGAWDEALELGEKHGYRNAQTTVIAPTGTIG 671

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +    +  I+P +  +  K    G +  + +  V    +   +  + I ++  +     
Sbjct: 672 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEGLGYSSSQIEEIVSYAVGHA 731

Query: 833 NIERIP 838
            +   P
Sbjct: 732 TLGNAP 737



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 50/150 (33%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        +   +D      ++     + ++  +I   A          +D
Sbjct: 793 NDPTFDLLRHLGFSKGDIDAANDHVCGTMTLEGAPHLKEEHYQIFDCANPCGKKGKRYLD 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + ++    Y  +W +G+K    Y   S+ + 
Sbjct: 853 VESHIRMMAAAQSFISGAISKTINMPNDAAIEECQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  D     +   +       L 
Sbjct: 913 PLAAALVEDDDDAAEVLETGNVQEKAVVLA 942


>gi|84687160|ref|ZP_01015041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664748|gb|EAQ11231.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2654]
          Length = 1230

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 150/757 (19%), Positives = 259/757 (34%), Gaps = 120/757 (15%)

Query: 183 SETYKNMYDGLS----ESDL---ETALIFSSRTLIEKEPNYAKVTARFLLEK-LRREVLT 234
           +E  K+ YD ++     S++   +  ++F     IE   ++++V +  + +K  R+  + 
Sbjct: 8   TEAGKDAYDAITFTRATSEIRNPDGTIVFKLDD-IEIPESWSQVASDVIAQKYFRKAGVP 66

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
              K  ++    E    +              R   E+        LA    Y   +   
Sbjct: 67  AALKPVKEDGVPEFLWRHVPDTKALDAMDKAERFGGETSSKQVFDRLAGAWAYW-GWKGG 125

Query: 295 YLG----LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           Y       +  YD  R+ L    +    PQ F      GL             +Y     
Sbjct: 126 YFSTEEDARAYYDEMRFMLAKQMAAPNSPQWFN----TGLHWAYGIDGPSQGHYY----- 176

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWT 405
             F     T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++
Sbjct: 177 VDFETKELTKSASAYEHPQPHACFIQSVGDDLVGDGGIMDLWVREARLFKYGSGTGTNFS 236

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD 464
            +R     +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++
Sbjct: 237 SLRAANEPLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEYIN 295

Query: 465 LRKNTGDD-----------RRRTHDMNTA-----------------------------NW 484
            +                  R  +D+ TA                               
Sbjct: 296 WKVKEEQKVASLVAGSKMHERHLNDIFTAIHGWDGSIDAATDPKENPQLKDAVRAAKKVA 355

Query: 485 IPDLFMKRVTQNA-------GWTLFSPDEVSDLH---------------DLYGKEFEIAY 522
           IP+ ++KRV   A        +  +  D  S+ +               D + K  E   
Sbjct: 356 IPETYIKRVLDYARQGYASIEFPTYDTDWDSEAYASVSGQNSNNSVRVTDAFLKAVEADA 415

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +       R +  V + I A  LW  +    +    P I + D  N        G +  S
Sbjct: 416 DW--ELIRRTDGSVAKTIKARDLWENIGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    +  F  +      R     L+  + +    
Sbjct: 474 NPCSEYMFL----DDTACNLASMNLLTFLKDGTFQAEDYMHATRLWTVTLEISVTMAQFP 529

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  + + Y S E   +       +S  A + S E+A
Sbjct: 530 SKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSKEGRALTGALTAILSGVAYATSAEMA 589

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E GA+  +K                  G+        I  + L      + A+   +  
Sbjct: 590 GELGAFDGYKRNADHMLRVIRNHRTAAYGATDGYEALDIKPVALDHAGCPDKALVDLAMS 649

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
            WDE     +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + 
Sbjct: 650 SWDEALALGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 709

Query: 804 SFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           +  V    ++  +  A I ++  +    GS+GN   I
Sbjct: 710 NRSVPAALEKLGYSSAQIEEIIAYAVGHGSLGNAPGI 746



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            N  G    +N    + LK        +   +D      ++     + ++  K+   A  
Sbjct: 789 RNDLGLGDELNDPTFDLLKHLGFSKGDIEAANDHALGTMTLEGAPHLKEEHYKVFDCANP 848

Query: 851 IDPM--------WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--T 899
                         I   +  Q +I  A S  + + ++ + +     Y  +W +G+K   
Sbjct: 849 CGKKGKRFLSTDAHIYMMAAAQSFISGAISKTINMPNDATIEDCQRAYELSWSLGIKANA 908

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            Y   S+ +  +  + ++  D     +    P      L 
Sbjct: 909 LYRDGSKLSQPLAAALVEDDDEAEEILATGTPQQKAEVLA 948


>gi|170738645|ref|YP_001767300.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium sp. 4-46]
 gi|168192919|gb|ACA14866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium sp. 4-46]
          Length = 1247

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 219/595 (36%), Gaps = 91/595 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 YRTGALTKSASAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSAL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG    +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E F+D +
Sbjct: 239 RGENEKL-AGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWK 297

Query: 467 -------------------------------KNTGD---DRRRTHDMNTAN------WIP 486
                                          +  GD   D  R   +           +P
Sbjct: 298 VREEQKVAALVTGSKVAAKHLKAVMRACLNCEAEGDACFDPERNPALKREVKAARRAMVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQ 528
           D  +KRV Q+A        + +F  D  S+ +                +F  A E     
Sbjct: 358 DASVKRVIQSARQGATEVDFPIFDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVEADADW 417

Query: 529 ADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             R  I  KV + + A  LW K+    + +  P + F    N        G + +SN C+
Sbjct: 418 PLRTRIGGKVAKTLKARDLWEKIGAAAWASADPGLHFNTTMNDWHTCPVGGRIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E        +   CNL S NLLA F      FD +      R    VL+  + +      
Sbjct: 478 EYMFL----DDTACNLASANLLALFDRGTRTFDVEAYEHLCRLWTIVLEISVTMAQFPSR 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +    ++ +R +GLG       L  + +PY S E   +A      ++  A + S E+A+E
Sbjct: 534 EIADLSYKYRTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAEMARE 593

Query: 705 RGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            G + +++                  G            + L      +  +   +   W
Sbjct: 594 LGPFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLSTKPVPLDHAACPQPDLVAHATRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D      +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DRALVLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFEIDPMWLIES 859
            V +  +   + E+ I++++ +    G++ + P      + A  F  D +  +E+
Sbjct: 714 AVPDALRALGYRESEIAEIEAYAVGHGSLGQAPAVNPAALRAKGFTDDKIAAVEA 768



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     YR +W +GLK    Y   S+
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCKEAYRLSWTLGLKANALYRDGSK 918


>gi|28210310|ref|NP_781254.1| vitamin B12-dependent ribonucleotide reductase [Clostridium tetani
           E88]
 gi|28202746|gb|AAO35191.1| ribonucleoside-diphosphate reductase (vitamin B12-dependent)
           [Clostridium tetani E88]
          Length = 1047

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 141/796 (17%), Positives = 253/796 (31%), Gaps = 136/796 (17%)

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
           L + +     K+ +K  +  +  L+         +  K   +   M D +          
Sbjct: 13  LNKIIRRKFTKELEKNKNLTVYDLFNWKLVDVFLKDHKTGKVLVDMKDLEFPE------- 65

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-------------GLALKETE 334
                +      I+  +YF           +     VA              GL   + E
Sbjct: 66  ----HYSQNSCDIIASKYFRKAGVPNKYGYENSMKMVAHRMVNFWASALHEQGLLKTKDE 121

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------------TR 364
           K+    E    L S  +  ++P  FN+G                                
Sbjct: 122 KQIFYDEMVYALLSQMYAPNSPQWFNTGLCMEYGIKGSPNGNYYYDENLKQVVESVDSYS 181

Query: 365 HPQLSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
             Q S+CF+ ++ D L G             L K   G G +++ +R  G  +    G S
Sbjct: 182 RTQASACFILSIEDKLLGSHSISDQYVNETKLFKGGSGTGTNFSTIRAKGEKLS-GGGVS 240

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++ FLK  +  A A+  G   R+ A    L+  H ++ +F+  +    D  R    M 
Sbjct: 241 SGLMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDIDHPEILDFITWKAREEDKVRALGKMG 300

Query: 481 TANWIPDLFMKRV-----TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               I     + V       +  ++ F  ++V +L  +     E           R +  
Sbjct: 301 YDMDIDGEAYETVSGQNSNNSIRFSDFFMEKVKNLDSMPDDTIE--------LEGRVDSS 352

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCT 586
           V +K+    LW       +    P   F D  N                   ++S+N C 
Sbjct: 353 VNQKVKVKDLWDSFAKSTWMCADPAPQFSDTFNAWHTCPAGEDGNVNAKHNKINSTNPCG 412

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E     +S     CNL SIN+   +   +   D +     +      L+  I       +
Sbjct: 413 EYAFLDNSS----CNLASINIYKFYDGKEKNIDLESYLHVVGLVQLALEASIYWGQFPTK 468

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              +  +  RA GLG+    S L +L  PY S EA  I+   +  ++ ++   S  +A+E
Sbjct: 469 DIAQKTYMFRATGLGITNLASLLMVLGYPYNSTEARNISSALVGLLTGYSYYISSLMAKE 528

Query: 705 RGAYSSF---------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            G +  F                      G   D    P+     L E      ++   +
Sbjct: 529 IGTFEKFSINKPHMLKVIRNHAKVAGSINGLYEDLNYNPVKVDHNLLENIGFSDLSNLLK 588

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             W +     +  G RN+    IAPT TI+      + SI+P + ++  K    G    V
Sbjct: 589 KSWLKALNSGEEHGYRNAQVSVIAPTGTISFAMDCGATSIEPFFSHVVYKKLSGGGMMTV 648

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH-------------------DGSIGNIERIPDDLKK 843
            + ++    +   + +  I D+  +                   DG I     +  +   
Sbjct: 649 TNPVIELSLKNLGYSKEQIKDILQYVLEKEVVQTKEGFKYEKVLDGKIEGAPHLKKEHYA 708

Query: 844 IHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLM 895
           I  TA +       I+PM  ++  +     I  A S  +   +  + +    +   +W +
Sbjct: 709 IFDTANKCGSGKRYIEPMGHVKMVAALTPLISGAISKTVNLPNNATIEDFKKVILNSWEL 768

Query: 896 GLKTTYYLRSRSATSV 911
           G+K     R     S 
Sbjct: 769 GVKGIALYRDGCKASQ 784


>gi|163736546|ref|ZP_02143965.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
 gi|161390416|gb|EDQ14766.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
          Length = 1214

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/648 (20%), Positives = 225/648 (34%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y       +     T  +S  
Sbjct: 134 RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSDSAY 184

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  +    GK
Sbjct: 185 EHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEPLS-GGGK 243

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT---------- 469
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F+D +             
Sbjct: 244 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIDWKVIEEQKVASIVAG 303

Query: 470 ------------------------------GDDRRRTHDMNTANWIPDLFMKRVTQNA-- 497
                                          D  ++         IP+ ++KRV   A  
Sbjct: 304 SKMHEKMLNGLFEAIRSWDGAEADAYNPTVNDGLKQAIREAKKVAIPETYVKRVLDYAKQ 363

Query: 498 -----GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRGEIKVFRK 539
                 +  +  D  SD +     +               +  +   +  +R + KV + 
Sbjct: 364 GHTSIEFPTYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVKKDADWQLINRVDGKVAKT 423

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    +    P I F D  N        G +  SN C+E        +   
Sbjct: 424 VKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGSNPCSEYMFL----DDTA 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL    +  F  +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 480 CNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLG 539

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------- 712
                  L  +   Y S E   +       ++  + + S E+A E G ++  +       
Sbjct: 540 YANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMASELGPFARHEQNASDML 599

Query: 713 -----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                      GS+       +  + L +    +  +   +   WDE  +  +  G RN+
Sbjct: 600 RVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMSSWDEALELGERHGFRNA 659

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               +APT TI  +    +  I+P +  +  K    G +  + +  V        +  A 
Sbjct: 660 QATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDGLGYSPAQ 719

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    G+IGN   I           P +L K+ A   +AF+I
Sbjct: 720 IEEIVSYAVGHGTIGNAPGINHTSLAGHGFGPAELAKVDAALESAFDI 767



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFEIDPMW-- 855
           T +N    + L+        + +   +  GS  +     + ++   I   A         
Sbjct: 790 TKLNDPTFDLLRHLGFGKADIEAANDHVCGSMTLEGAPHLKEEHYHIFDCANPCGKKGKR 849

Query: 856 ------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
                  I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+
Sbjct: 850 YLGVESHILMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 909

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  +  + ++  D     +          +L 
Sbjct: 910 LSQPLAAALVEDDDEAAEVLESGSQQEKAVTLA 942


>gi|254461385|ref|ZP_05074801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium HTCC2083]
 gi|206677974|gb|EDZ42461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 1225

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 139/719 (19%), Positives = 239/719 (33%), Gaps = 118/719 (16%)

Query: 214 PN-YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           P+ +++V +  + +K  R+            T    +   P +  R            E+
Sbjct: 44  PDSWSQVASDVIAQKYFRKA------GVPNKTKQVKEKGVPAFLWRSEPAKDNDGFSGET 97

Query: 273 MMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAFFMRVAM 326
                   LA    Y   +   Y       Q  YD  R+ L    +    PQ F      
Sbjct: 98  SSKQVFDRLAGAWTYW-GWKGGYFSTEADAQTYYDEMRFMLATQRAAPNSPQWFN----T 152

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--- 383
           GL              Y       +     T   S   HPQ  +CF+ +V DDL G    
Sbjct: 153 GLHWAYGIDGPAQGHHY-----VDYQTGVLTKSKSSYEHPQPHACFIQSVSDDLVGDGGI 207

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+  G  
Sbjct: 208 MDLWVREARLFKYGSGTGTNFSSLRADGEQLS-GGGKSSGLMGFLKIGDRAAGAIKSGGT 266

Query: 443 KRKGAVCAYLETWHIDVEEFLDLR----------------------------------KN 468
            R+ A     +  H DV+EF++ +                                    
Sbjct: 267 TRRAAKMVICDADHPDVQEFINWKVKEEQKVASIVAGSKMHEQHLNEIFKAIRAWDGSSE 326

Query: 469 TGDDRRRTHDMNTANW------IPDLFMKRVTQNA-------GWTLFSPDEVSDLH---- 511
              D ++   +  A        IP+ ++KRV   A        +  +  D  S+ +    
Sbjct: 327 DAVDPKKNSQLKDAIRGAKKTSIPETYVKRVLDYAKQGYSSIEFPTYDTDWDSEAYASVS 386

Query: 512 -----------DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                      D + K  E   +       R +  V + I A  LW  +    +    P 
Sbjct: 387 GQNSNNSVRVTDSFLKAVEADSDW--ELIRRTDGTVAKTIKARDLWEDIGHAAWACADPG 444

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I + D  N        G +  SN C+E        +   CNL S+NLL  + +++F  D+
Sbjct: 445 IQYHDTVNAWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASMNLLKFYKDSKFQADE 500

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
                R     L+  + +     ++  + +   R +GLG       L  +   Y S E  
Sbjct: 501 YVHATRLWTVTLEISVMMAQFPSKEIAQRSFDFRTLGLGYANIGGLLMNMGHSYDSDEGR 560

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFP 722
                    ++  + + S E+A E GA++ ++                  G+        
Sbjct: 561 AFCGALTAVMTGVSYATSAEMAGELGAFAGYEKNAGHMLRVIRNHRNAAYGATEGYETLD 620

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781
           I  + L      +  + + +   WD   +  +  G RN+    IAPT TI  +    +  
Sbjct: 621 IKPVALDLANCPDQDLTKLAMASWDNALELGEKHGYRNAQVSVIAPTGTIGLVMDCDTTG 680

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           I+P +  +  K    G +  + +  V    +   +  A I ++  +     SIGN   I
Sbjct: 681 IEPDFALVKFKKLAGGGYFKIINQSVPTALENLGYGSAQIEEIVSYAVGHASIGNAPGI 739



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   I   A                I   +  Q +I  A S  + + ++ 
Sbjct: 822 TLEGAPYLKEEHLNIFDCANPCGKKGKRFLSVDSHIHMMAAAQSFISGAISKTINMPNDA 881

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           + +     Y  +W +G+K    Y   S+ +  +  + ++  D  ++ +   +
Sbjct: 882 TIEDCQKAYELSWSLGVKANALYRDGSKLSQPLAAALVEDDDDAMDVLESGN 933


>gi|259418707|ref|ZP_05742624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
 gi|259344929|gb|EEW56783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
          Length = 1055

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 139/648 (21%), Positives = 228/648 (35%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y       +     T  NS  
Sbjct: 44  RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSNSAY 94

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  +    GK
Sbjct: 95  EHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEKLS-GGGK 153

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD-------- 471
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +             
Sbjct: 154 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVLEEQKVASIVAG 213

Query: 472 ------------DRRRTHD----------MNTA----------NWIPDLFMKRVTQNA-- 497
                       +  RT D           NTA            IP+ ++KRV   A  
Sbjct: 214 SKMHEKMLNGIFEALRTWDGLSEDAYDPAENTALKSAIREAKKVAIPETYIKRVLDYARQ 273

Query: 498 -----GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--ERQADRGEIKVFRK 539
                 +  +  D  S+ +                 F  A E        +R + KV + 
Sbjct: 274 GYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDSDWELINRTDGKVAKT 333

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    +    P I F D  N        G +  SN C+E        +   
Sbjct: 334 VKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFL----DDTA 389

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL  +    F  +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 390 CNLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLG 449

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------- 712
                  L  +   Y S E   +       ++  A + S E+A E G ++ ++       
Sbjct: 450 YANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIASELGPFAGYERNADHML 509

Query: 713 -----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                      G+        +  + L  +   +  +   +   WDE     +  G RN+
Sbjct: 510 RVMRNHRNAAYGATEGYDALTVKPVPLDLQNCPDARLTELAMSAWDEAVNLGEKHGYRNA 569

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI  +    +  I+P +  +  K    G +  + +  V    +   +  A 
Sbjct: 570 QSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALEGLGYSSAQ 629

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    GSIGN   I           P++L K+ A   +AF+I
Sbjct: 630 IEEIVSYAVGHGSIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDI 677



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+        +   +D      ++     + ++   I   A            
Sbjct: 703 NDTAFDLLRHLGFTKADIDAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKRYLG 762

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I+  +  Q +I  A S  + + +  + +     Y  +W +G+K    Y   S+ + 
Sbjct: 763 VDSHIKIMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 822

Query: 910 SVEKSTLKGVDGKLN 924
            +  + ++  D    
Sbjct: 823 PLAAALVEDDDEAAE 837


>gi|90417656|ref|ZP_01225568.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337328|gb|EAS50979.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1294

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/626 (19%), Positives = 222/626 (35%), Gaps = 105/626 (16%)

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L         PQ F      GL             +Y       +     T   S   
Sbjct: 144 YMLATQKVAPNSPQWFN----TGLHWAYGIDGPGQGHYY-----VDYRTGELTRSTSSYE 194

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  +    GKS
Sbjct: 195 HPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGSNFSYLRGEGETL-AGGGKS 253

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD--------- 471
            G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++  +    +         
Sbjct: 254 SGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYISWKVREEEKVAALVTGS 313

Query: 472 -------------------------DRRRTHDMNTAN------WIPDLFMKRVTQ----- 495
                                    +  +   +  A        +P+ ++KRV Q     
Sbjct: 314 KTVSKHLKAILSACVNCEGPDGDCFEPMKNPALKRAVKDAKRAQVPENYVKRVIQFARQG 373

Query: 496 --NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRKI 540
             +  + ++  D  S+ +                +F  A E         R + KV + +
Sbjct: 374 YTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVEEDGTWDLIRRTDGKVAKTL 433

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW ++    + +  P + +    N        G + +SN C+E        +   C
Sbjct: 434 KARELWDQIGYAAWASADPGLHYNTTMNDWHTCPAAGPIRASNPCSEYMFL----DDTAC 489

Query: 601 NLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           NL S+NL+              +FD D      R    VL+  + +     ++  + ++ 
Sbjct: 490 NLASLNLIQFREEGLDGPEGIKRFDTDAFEHATRLWTVVLEISVMMAQFPSKEIARLSYD 549

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    IPY S E   I       ++  A   S E+A   GA+  ++
Sbjct: 550 YRTLGLGFANIGGLLMTAGIPYDSDEGRAICGAIAALMTGVAYKTSAEMAGHLGAFPDYE 609

Query: 713 GS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +                G+        +D + L      +  ++  ++  W +  +  K
Sbjct: 610 RNSEHMLRVMRNHGRAAHGIANGYEGLSVDPVPLDHASLPDKRLSARAKTAWTDAVELGK 669

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +    E  + 
Sbjct: 670 KNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAAPEALRS 729

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPD 839
             + EA I++++ +    GN+ + P 
Sbjct: 730 LGYTEAQIAEMEAYAVGHGNLNQAPA 755



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +  F    L       + + +   +  G  ++     +  +   +   
Sbjct: 797 FMKETLGVSDEQLADFAFELLPFLGFSRKDIDAANVHVCGAMTLEGAPHLKPEHLAVFDC 856

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +  +  Y  +W + LK
Sbjct: 857 ATPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCNAAYMLSWKLALK 916

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 917 ANALYRDGSK 926


>gi|119384125|ref|YP_915181.1| ribonucleotide-diphosphate reductase subunit alpha [Paracoccus
           denitrificans PD1222]
 gi|119373892|gb|ABL69485.1| ribonucleoside-diphosphate reductase class II [Paracoccus
           denitrificans PD1222]
          Length = 1205

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 134/674 (19%), Positives = 238/674 (35%), Gaps = 143/674 (21%)

Query: 316 MPQAFFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG---- 362
             +  F R+A          G    E +      E  ++L++     ++P  FN+G    
Sbjct: 105 SARQVFDRMAGAWAYWGWKGGYFSSEDDARAYYDEMRHMLAAQMGAPNSPQWFNTGLHWA 164

Query: 363 --------------------------TRHPQLSSCFLTTVPDDLY---GIFGALQENAML 393
                                       HPQ  +CF+ +V DDL    GI       A L
Sbjct: 165 YGIDGPGQGHFYVDYKTGKLVRSDSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARL 224

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
            KY  G G +++ +RG G  +    GKS G++ FLK+ +  A A+  G   R+ A     
Sbjct: 225 FKYGSGTGTNFSSLRGEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIC 283

Query: 453 ETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTA------------------- 482
           +  H D+E+F++ +                  R  + +  A                   
Sbjct: 284 DMDHPDIEQFINWKVIEEQKVASLVAGSKMHERELNAIFAAIREWDGSVEDATDPAKNAV 343

Query: 483 ----------NWIPDLFMKRVTQNA-------GWTLFSPDEVSDLH-DLYG--------- 515
                       IP+ ++ RV Q A        +  +  D  S+ +  + G         
Sbjct: 344 LKSAIRSAKRVMIPETYINRVLQYARQGFDSIEFPTYDTDWDSEAYVSVSGQNSNNSVRV 403

Query: 516 -KEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
              F  A  +        R + KV + +SA  LW ++    +    P I F D  N    
Sbjct: 404 TDAFLRAVRDDLPWELVRRTDGKVAKTVSARELWDQIGHAAWACADPGIQFHDTVNAWHT 463

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
               G +  SN C+E        +   CNL S+NLL+ ++  +FD D      R     L
Sbjct: 464 CPEDGAIRGSNPCSEYMFL----DDTACNLASMNLLSFWSGKEFDADGYVHASRLWTVTL 519

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +  + +     ++  + ++  R +GLG       L  + + Y S E   +       ++ 
Sbjct: 520 EISVMMAQFPSKEIAQRSYDFRTLGLGYANIGGLLMNMGLGYDSDEGRALCGALTAVMTG 579

Query: 693 HAISASVELAQERGAYSSFKGS--------------LWDQGVFP---IDSIGLLAEVRDE 735
            + + S E+A E G +  +  +               +  G +    +  + L      +
Sbjct: 580 VSYATSAEMAAELGPFPGYGKNAQHMLRVIRNHRAAAYGTGAYEGVNVRPVELDTANCPD 639

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN 794
             +   ++  WDE     +  G RN+    IAPT TI  +    +  I+P +  +  K  
Sbjct: 640 PRLVALAQGAWDEALTLGEAHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKL 699

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDD 840
             G +  + +  V    +   +  A I ++  +     S+GN   I           P +
Sbjct: 700 AGGGYFKIINRSVPAALETLGYGSAQIEEIIAYAVGHASLGNCPGINHASLIGHGFGPRE 759

Query: 841 LKKIH---ATAFEI 851
           L+K+    A+AF+I
Sbjct: 760 LEKVDAALASAFDI 773



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 45/163 (27%), Gaps = 13/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + +  +      +N    + L+        +   +D      ++     +  +   +   
Sbjct: 786 FCRETLGIPAERLNDPTFDLLRHLGFTRAQIDAANDHVCGTMTLEGAPHLKPEHYSVFDC 845

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A                I   +  Q +I  A S  + +    S       Y  +W +G+K
Sbjct: 846 ANACGKKGTRYLSVESHIRMMAAAQSFISGAISKTINMPNSASIADALAAYELSWSLGIK 905

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
               Y   S+ +  +  + ++  +     +           L 
Sbjct: 906 ANALYRDGSKLSQPLASALVEDDEEAEEILATGSAQEKAAVLA 948


>gi|260433625|ref|ZP_05787596.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417453|gb|EEX10712.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1209

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 155/748 (20%), Positives = 264/748 (35%), Gaps = 128/748 (17%)

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE    +++V +  + +K  R+    V  K +K    ++    PE+  R +     A   
Sbjct: 41  IEVPSTWSQVASDVIAQKYFRKA--GVPSKLEKVREKDV----PEFLWRSV-PAEDAEFG 93

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAFFMR 323
            E+        LA    Y   +   Y       +  +D  RY L    +    PQ F   
Sbjct: 94  GETSSKQVFDRLAGAWAYW-GWKGGYFSTEEDARAYFDEMRYMLATQRAAPNSPQWFN-- 150

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY-- 381
              GL             +Y       +     T   S   HPQ  +CF+ +V DDL   
Sbjct: 151 --TGLHWAYGIDGPAQGHYY-----VDYKTGKLTKSKSAYEHPQPHACFIQSVDDDLVNE 203

Query: 382 -GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI       A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+  
Sbjct: 204 GGIMDLWVREARLFKYGSGTGTNFSHLRAEGEALS-GGGKSSGLMGFLKIGDRAAGAIKS 262

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLR--------------------------------- 466
           G   R+ A    ++  H D+E+F++ +                                 
Sbjct: 263 GGTTRRAAKMVIVDADHPDIEKFIEWKVIEEQKVASIVAGSKMHEKMLNGIFEAIRTWDG 322

Query: 467 -KNTGDDRRRTHDMNTA------NWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHD 512
            +    D ++   +  A        IP+ ++KRV   A        +  +  D  S+ ++
Sbjct: 323 AQEDAYDPKKNDALKAAIREAKKVAIPETYIKRVLDYAKQGHDSIEFPTYDTDWDSEAYN 382

Query: 513 LYGK-----------EFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                           F  A E        +R + KV + + A  LW K+    +    P
Sbjct: 383 SVSGQNSNNSIRVTNAFLKAVEKDADWELINRTDGKVAKVVKARDLWEKVGHAAWACADP 442

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
            I F D  N        G +  SN C+E        +   CNL S+NLL    + +F   
Sbjct: 443 GIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFL----DDTACNLASMNLLTFLKDGEFQAA 498

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                 R     L+  + +     ++  + ++  R +GLG       L  +   Y S E 
Sbjct: 499 DYMHAARLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEG 558

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV------F 721
             I       ++  A + S E+A E G ++ +K +               QGV       
Sbjct: 559 RAICGALTAIMTGVAYATSAEIAGELGPFAGYKRNADHMLRVIRNHRRAAQGVTEGYEKL 618

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
            +  + L      +  +   +   WDE     +  G RN+    IAPT TI  +    + 
Sbjct: 619 SVKPVPLDHANCPDKRLVDLAMSAWDEALSLGEKHGYRNAQATVIAPTGTIGLVMDCDTT 678

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
            I+P +  +  K    G +  + +  V    ++  +  A I ++  +    G++GN   I
Sbjct: 679 GIEPDFALVKFKKLAGGGYFKIINRSVPSALEKLGYSSAEIEEIVSYAVGHGTLGNAPGI 738

Query: 838 -----------PDDLKKIHA---TAFEI 851
                      P++L KI A   +AF+I
Sbjct: 739 NHTSLTGHGFGPNELAKIDAALESAFDI 766



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+        +   +D      ++     +  +   I   A            
Sbjct: 792 NDPTFDMLRHLGFSKADIEAANDHVCGTMTLEGAPHLKPEHYSIFDCANPCGKKGKRFLG 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I+  +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VDSHIKMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             +     D    A  +   ++   ++ + 
Sbjct: 912 PLAAALVEDDNEAAEILESGSAREKAVTLA 941


>gi|254437550|ref|ZP_05051044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198252996|gb|EDY77310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 1223

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 133/652 (20%), Positives = 224/652 (34%), Gaps = 107/652 (16%)

Query: 278 LVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALK 331
              LA    Y   +   Y       Q   D  RY L    +    PQ F      GL   
Sbjct: 102 FDRLAGAWAYW-GWKGGYFSTEADAQTYLDEMRYMLATQRAAPNSPQWFN----TGLHWA 156

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQ 388
                      Y       +     T   S   HPQ  +CF+ +V DDL    GI     
Sbjct: 157 YGIDGPAQGHHY-----VDYKTGKLTASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWV 211

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447
             A L KY  G G +++ +R  G ++    GKS G++ FLK+ +  A A+  G   R+ A
Sbjct: 212 REARLFKYGSGTGTNFSSLRASGENLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAA 270

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTA-------------- 482
               ++  H D+EEF++ +                  ++ + +  A              
Sbjct: 271 KMVIVDADHPDIEEFINWKVLEEQKVASIVAGSKMHEQKLNLIFDAIKGWDGAEADAYDP 330

Query: 483 ---------------NWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG----- 515
                            IP+ ++KRV   A        +  +  D  S+ ++        
Sbjct: 331 KINPQLKDAVREAKKVCIPETYVKRVLDYARQGHTAIEFPTYDTDWDSEAYNSVSGQNSN 390

Query: 516 ------KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                   F  A E+    +  +R   +V + I A  LW ++    +    P I + D  
Sbjct: 391 NSIRVTDAFLKAVEDDANWKLINRKNGEVAKVIKARDLWEQVGHAAWACADPGIQYHDTV 450

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N        G +  SN C+E        +   CNL S+NLL  F +  F  +      R 
Sbjct: 451 NAWHTCPEDGAIRGSNPCSEYMFL----DDTACNLASMNLLKFFKDGAFQVEDYMHASRL 506

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
               L+  + +     ++  + +   R +GLG       L  +   Y S E   +A    
Sbjct: 507 WTVTLEISVMMAQFPSKEIAQRSFDFRTLGLGYANIGGLLMNMGFGYDSDEGRSMAGALT 566

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWD------------------QGVFPIDSIGLL 729
             ++  + + S E+A E GA+S +K +                          I  + L 
Sbjct: 567 AIMTGVSYATSAEIAGELGAFSGYKRNKEHMLKVIRNHRNAAYGASDGYEKLDIKPVPLD 626

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN 788
                E  +   +   WDE  +  +  G RN+    IAPT TI  +    +  I+P +  
Sbjct: 627 HANCPEARLIDIAMSTWDEALRLGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFAL 686

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           +  K    G +  + +  V     +  +  +   +++ +    GS+GN   I
Sbjct: 687 VKFKKLAGGGYFKIINQSVPAALAKLGYSTSQAEEIQAYAVGHGSLGNAPGI 738



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEA--MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + LK      E   + +D      ++     + ++   +   A            
Sbjct: 792 NDPTFDLLKSLGFSKEDTDLANDHVCGTMTLEGAPHLKEEHYVVFDCANPCGKKGKRYLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMASAQSFISGAISKTINMANSATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +  A  + + N    +  I  
Sbjct: 912 PLAAALIEDDEEAADILENGNIHAKAQVIAE 942


>gi|197104105|ref|YP_002129482.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
 gi|196477525|gb|ACG77053.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
          Length = 570

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 138/595 (23%), Positives = 216/595 (36%), Gaps = 88/595 (14%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-----VPDDLYGIFG 385
            E E       F  LL  F F+        +G     L +CF+          +      
Sbjct: 41  VEREPGLWRGRFRALLEDFRFLPGGRIQAGAGDPAAVLFNCFVLPAFGPGPGAEADRALD 100

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           AL+E     +  GG+G D +               + G + +L + +        G  R+
Sbjct: 101 ALREAVATLRAGGGVGCDVSGA-PPAGAAAERGPPAPGPVGYLHLWDAACRVFLAGATRQ 159

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+   L   H DVE F   +   G         N +  + + FM  V  +A W L  P 
Sbjct: 160 GALMGALRCDHPDVEAFAAAKTAPG----ALSRFNLSVAVTEAFMAAVAADADWPLRFPV 215

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E                             V R + A  LW ++L   +ETG P + F D
Sbjct: 216 ETG--------------------------PVVRTVRARGLWTRILRCAYETGDPGVLFID 249

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDK 620
             N  +P      + ++N C E+ L     +   C+LGS+NL    A       + D   
Sbjct: 250 RINAENPLAWRERLAATNPCGEVPLP----DYGACDLGSLNLTRFVAAPFTPEARLDLAG 305

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA     AVR+LD+VIDI+   +          R IGLG+ G   AL +L + Y    ++
Sbjct: 306 LAEAAAAAVRLLDDVIDISAFPLAAQADEARATRRIGLGITGLADALVMLGLRYGEAASL 365

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
             A E+M  I   A  AS  LA+E+GA+ + +      G F                   
Sbjct: 366 RAAGEAMRTIRDAAYGASAGLAREKGAFPACEAERLLAGPFAR----------------- 408

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVK--SNMSG 797
             RLP + L+  +   G+RNS+ +A+AP  +I+ +  G+S  ++P +  +  +      G
Sbjct: 409 --RLP-EPLRAAIARHGLRNSHLLAVAPAGSISLLAGGISPGLEPIFAAVQERTLRTSPG 465

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +   V            LW  A                     L    A A +I     +
Sbjct: 466 ETRAVRWT----AASVALWRRATGEA---------------AGLPPAFAAAHDIPADAHL 506

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +  +  Q ++DQA S  + +   +  +    IY  A   GLK     R   A  +
Sbjct: 507 DMQAALQPYVDQAISKTVNVPVETPFEDFARIYAGAHARGLKGCTAFRPARAQVI 561


>gi|254476611|ref|ZP_05089997.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
 gi|214030854|gb|EEB71689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
          Length = 1216

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 130/648 (20%), Positives = 226/648 (34%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y       +     T  ++  
Sbjct: 134 RYMLATQRAAPNSPQWFN----TGLHWAYGINGPAQGHHY-----VDYKTGKLTKSDNAY 184

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  +    GK
Sbjct: 185 EHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEALS-GGGK 243

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT---------- 469
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +             
Sbjct: 244 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVIEEQKVASIVAG 303

Query: 470 ------------------------------GDDRRRTHDMNTANWIPDLFMKRVTQNA-- 497
                                          +  ++         IP+ ++KRV   A  
Sbjct: 304 SKMHEKMLNGLFEAIRSWDGAEADAYDPAVNEGLKKAIREAKKVAIPETYIKRVLDYAKQ 363

Query: 498 -----GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRGEIKVFRK 539
                 +  +  D  SD +     +               +  +      +R + KV + 
Sbjct: 364 GHTSIEFPTYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVQKDADWELINRVDGKVAKT 423

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    +    P I F D  N        G +  SN C+E        +   
Sbjct: 424 VRARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPADGEIRGSNPCSEYMFL----DDTA 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL    + +F  +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 480 CNLASLNLLTFLKDGEFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLG 539

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------- 712
                  L  +   Y S E   +       ++  + + S E+A E G ++ ++       
Sbjct: 540 YANIGGLLMNMGFGYDSIEGRALCGALTAIMTGVSYATSAEMASELGPFARYEANANHML 599

Query: 713 -----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                      GS+       +  + L      +  +   +   WDE     +  G RN+
Sbjct: 600 RVIRNHRAAAHGSVDGYEGLAVKPVPLDIANCPDPRLAELAMSSWDEALDLGEKHGYRNA 659

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               +APT TI  +    +  I+P +  +  K    G +  + +  V    +   +  A 
Sbjct: 660 QATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEGLGYSTAQ 719

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    GSIGN   I           P++L KI A   +AF+I
Sbjct: 720 IGEIVSYAVGHGSIGNAPAINHTSLAGHGFGPNELAKIDAALESAFDI 767



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFEIDPMW-- 855
           T +N    + L+        + +   +  GS  +     + ++   I   A         
Sbjct: 790 TKLNDPTFDLLRHLGYTKAEIEAANDHVCGSMTLEGAPHLKEEHYSIFDCANPCGKKGKR 849

Query: 856 ------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
                  I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+
Sbjct: 850 YLSVDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQAAYELSWSLGVKANALYRDGSK 909

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  +  + ++  D     +          +L 
Sbjct: 910 LSQPLAAALVEDDDEAAEILESGSQQEKAVTLA 942


>gi|158335535|ref|YP_001516707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
 gi|158305776|gb|ABW27393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
          Length = 649

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 156/669 (23%), Positives = 260/669 (38%), Gaps = 75/669 (11%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF---HFMCSTPTLFN 360
           +Y +          +    RVA  +A  E+  E+++      LS      F+     L N
Sbjct: 21  KYLIEDEV----SWEDVVHRVATYVASAESTPEQQSYWQEKFLSILQPMKFVPGGSILAN 76

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP------VRGLGAHI 414
                  L +CF+ +  D ++ I   + ++ +  K+ GG+G +         +R  GA  
Sbjct: 77  CDHGTRGLLNCFVLSAEDHIHDITKLVSDSVLTTKFRGGVGINIGAEGSKGYIRQKGAPF 136

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
              +GK+ G    L + ++ +  +  G K R+GA    +   H D+ EF+  +  +    
Sbjct: 137 Q--DGKALGPCAVLDMVSENSKKITTGNKARRGAFLFSMNWKHPDIWEFIQAKTQS---- 190

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
             T D N A  + +   +   Q+   +    +++  LH   G  +   + N E + DR  
Sbjct: 191 --TIDANFAKSVMEELAQLAQQDEP-SQGKQEKLKALHTEVGTAWVETHLNPEGKRDRRW 247

Query: 534 IKVFRKI---------------SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                 +                A  LW+ M      T  P +   D    RS       
Sbjct: 248 HNANISVQLDDEFFAKLDQGDEEANKLWQAMAENAHATADPGLLLIDNAKRRS--PIRDF 305

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLD 633
           V  +N C EI L  +S     CNLGS+ L          N + D+D LA T+R A+R LD
Sbjct: 306 VTCTNPCGEIFLPPNS----ACNLGSLVLTKFVRRTAEGNIEIDWDDLAETVRIAIRFLD 361

Query: 634 NVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           NV+D++       K +     R +GLG+MG+   L L  IPY S   +E  D    +I+ 
Sbjct: 362 NVLDVSEFATPDQKHNVRDVFRQLGLGIMGWADYLKLARIPYDSARHLEEIDRWGSWIAA 421

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           HA   S  +A E+GA   +      Q   P +         D               ++ 
Sbjct: 422 HAYRTSEAIAAEKGACGVWDQIKDIQTGNPFERW------MDSEGNYYNGTEAHHNDRQD 475

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN-LYVKSNMSGDFTVVNSFLVNELK 811
           +  +  RNS  ++IAPT +IA +   S + +P +   L+ +  +    +  N   +    
Sbjct: 476 LTQVPRRNSTVLSIAPTGSIAQLAACSWAFEPDFGLTLWKQVFVDASRSQQNWVQILNPY 535

Query: 812 QRDLWDEAMISDLKYHDGSIG--NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
             +L      +++    GS+   N  +   ++ +    A EI P W I   S+ Q WID 
Sbjct: 536 LDELNLPEADAEIVKQTGSLADTNYGKQHPEIARSFKIAREIPPGWHILVQSKWQSWIDS 595

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S  + L    +  ++  IYR A   GLK     RS               G L++ P+
Sbjct: 596 SISKTINLPAHATVDEIKQIYRLAEKAGLKGVTIYRS---------------GTLDSEPI 640

Query: 929 TDPNSSTHS 937
              NS   S
Sbjct: 641 KVGNSEKDS 649


>gi|144898200|emb|CAM75064.1| Ribonucleotide reductase large subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1208

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/595 (20%), Positives = 219/595 (36%), Gaps = 92/595 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ ++ DDL    GI       A L KY  G G +++ +RG
Sbjct: 181 TGKLTRSKSSYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSKLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F++ +  
Sbjct: 241 EGERLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFINWKVV 299

Query: 469 TGDDR------------------------------------------RRTHDMNTANWIP 486
                                                          ++         IP
Sbjct: 300 EEQKVAALVAGSKLAQKHLGEVMASMREWDGAADSDARFDPKLNKRLKKAIIGARGAMIP 359

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQ 528
           + +++R+ Q       +  + +F+ D  S+ +                 F  A  + +  
Sbjct: 360 ENYVQRMIQFARQGYLDIEFPVFNTDWDSEAYLTVSGQNSNNTVRVTDAFLNAVIDDQDW 419

Query: 529 A--DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW ++    +    P I F    N        G +++SN C+
Sbjct: 420 VLKHRNSDKVKKNLKARDLWERIGEAAWACADPGIQFDTTINDWHTCPESGRINASNPCS 479

Query: 587 EITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E        +   CNL S+NLL+   A+  FD +      R    VL+  + +     EK
Sbjct: 480 EYMFL----DDTACNLASLNLLSFRRADASFDIEGFRHACRLWTMVLEISVLMAQFPSEK 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++  R +GLG       L    IPY S +   +       ++  +   S E+A E 
Sbjct: 536 IAQLSYEFRTLGLGFANIGGLLMADGIPYDSQKGRALTGAITALMTGESYVTSAEMAAEL 595

Query: 706 GAYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWD 747
           GA+  +  +                G+        I  + L A+   + ++   +RL WD
Sbjct: 596 GAFPGYGANSAHMLRVIRNHRRAAYGLTSGYEGLDISPVPLDADNCPDSSLVAAARLAWD 655

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
                 +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + +
Sbjct: 656 SALAMGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRM 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESA 860
           V E  +   + E+ ++++  +      +   P  +  K+ A  F  + +  +E +
Sbjct: 716 VPEALRSLGYAESDVAEIIRYAVGHATLRDAPGINHNKLRAKGFTDEVLEKVEQS 770



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRS 907
           +     I   +  Q +I  A S  + +    S +     Y  +W +GLK    Y   S+ 
Sbjct: 861 LSAESHIHMMAAAQPFISGAISKTINMPNSASVEDCKDAYMLSWRLGLKANALYRDGSKL 920

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  ++ + L         V      +    + 
Sbjct: 921 SQPLQAALLDDAGALEEEVTNAPLAARAEIVA 952


>gi|222148917|ref|YP_002549874.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           vitis S4]
 gi|221735903|gb|ACM36866.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           vitis S4]
          Length = 1256

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/578 (20%), Positives = 214/578 (37%), Gaps = 92/578 (15%)

Query: 348 SFHFMC--STPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+        T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYIDPFTGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E 
Sbjct: 234 NFSHLRGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEN 292

Query: 462 FLDLRKNTGDDRRRT------------------------------HDMNTAN-------- 483
           ++D +                                         + N A         
Sbjct: 293 YIDWKVKEEQKVAALVTGSKIVAKHLKAIMKACVNCSADNDACFDPNENPALKREIRAAK 352

Query: 484 --WIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +P+ ++KRV Q       +  +  +  D  S+ +                +F  A E
Sbjct: 353 KDMVPENYVKRVIQFAQQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSLRDDFLRAVE 412

Query: 524 NY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +        R + +V + + A  LW K+    + +  P + F    N        G + +
Sbjct: 413 DDGNWNLTARRDGRVMKTLKARDLWEKISYAAWASADPGLHFNTTMNDWHTCPAAGPIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S+NLL        + D       +R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASLNLLQFKDADTKKIDIADYEHAVRLWTVVLEVSVMMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                +  + ++ +R +GLG       L    IPY S E   I       ++  + + S 
Sbjct: 529 QFPSRQIAELSYEYRTLGLGYANIGGLLMSTGIPYDSAEGRAICGALSAIMTGVSYATSA 588

Query: 700 ELAQERGAYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRT 741
           E+A E G +  +  +                G+        +D + L+     + A+   
Sbjct: 589 EIASELGPFPGYAPNRDNMLRVIRNHRRAAHGLSDGYEGLAVDPVPLVHAECSDPALIAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           ++  WD+  +  +  G RN+    +APT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 AKAAWDKALELGEQHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            + +  V E  +   + E+ +++++ +    GN+ + P
Sbjct: 709 KIINRAVPEALRTLGYTESQLAEIEAYAVGHGNLNQAP 746



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKETLGVSAEQLTDMSFNLLEHLGFAKKDIEAANIHVCGAMTLEGAPFLKKEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCGAAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|319783931|ref|YP_004143407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169819|gb|ADV13357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 128/571 (22%), Positives = 217/571 (38%), Gaps = 89/571 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG
Sbjct: 182 TGKLTKSKSSYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRG 241

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR-- 466
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF+D +  
Sbjct: 242 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVN 300

Query: 467 -----------------------------KNTGDD---------RRRTHDMNTANWIPDL 488
                                        +  GDD          +R       + +P+ 
Sbjct: 301 EEQKVASLVTGSKIVKKHLEAIMKACVNCEGNGDDCFDPSINSALKREIKAAKKSAVPEN 360

Query: 489 FMKRVTQNAG-------WTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++ RV Q A        +  +  D  SD +                 F  A E+      
Sbjct: 361 YIYRVIQFAKQGYSSMSFKTYDTDWDSDAYLTVSGQNSNNSVSLKDNFLRAVEDDADWHL 420

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E 
Sbjct: 421 TARKDGKVLKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEY 480

Query: 589 TLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  +   CNL SINLL +  A+   D      T+R    VL+  + +     ++  
Sbjct: 481 MFL----DDTACNLASINLLPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIA 536

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K ++ +R +GLG       L    IPY S E   I       ++  A + S E+A E GA
Sbjct: 537 KQSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGMAYATSAEMAGELGA 596

Query: 708 YSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           ++ +                   G         ++ + L+A    +  +   ++  WD  
Sbjct: 597 FADYDRNAQNMLRVMRNHRRAAYGEKQGYEKLAVNPVPLVASDLKQQDLATHAKAAWDRA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 657 IELGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 716

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           E  +   + EA I++++ +    GN+ + P 
Sbjct: 717 EALRTLGYSEAQIAEMEAYAVGHGNLNQAPA 747



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 789 WVKETFGFTDEQLNDFSFEMLPALGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLAVFDC 848

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 908

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
               Y   S+ +  +  S L   +   +  
Sbjct: 909 ANALYRDGSKLSQPLNSSLLADGEDDEDEA 938


>gi|209549016|ref|YP_002280933.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534772|gb|ACI54707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1271

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 211/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 TGDDRRRTHDMNTAN-----------------------------------------WIPD 487
                      +                                             +P+
Sbjct: 300 EEQKVAALVTGSKIVARHLKAIMKACVNCDGGDNGDCFDPTKNPALKREIRAAKKDQVPE 359

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN    +
Sbjct: 360 NYVQRVIQFARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWK 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 420 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 479

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 480 YMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKR 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 536 IAELSYEYRTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAEL 595

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          ID + L+     +  +   ++  WD
Sbjct: 596 GPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWD 655

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 656 KALELGERHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V +  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 VPDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 748



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W +GLK    Y   S+
Sbjct: 864 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYLLSWKLGLKANALYRDGSK 919


>gi|82492130|gb|ABB77927.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 1061

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 145/679 (21%), Positives = 256/679 (37%), Gaps = 119/679 (17%)

Query: 333 TEKEKRAVEFYNL-LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
            ++  R  + +   +     M ++PT+ N+G    QLS+CF+ +  DD+  I   + + A
Sbjct: 137 ADEVARVKDEFQANMEKLGVMPNSPTIMNAGDELQQLSACFVNSPGDDIRDIHDKVADAA 196

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            + +  GG+G  +  +R  G  +  T G + G I F++  +     +  GGKR+GA    
Sbjct: 197 DVFQSGGGMGYAFHTLRPYGDVVGSTGGVASGPISFMRTFDQMCATIAAGGKRRGAQMGV 256

Query: 452 LETWHIDVEEFLD-----------LRKNTGDDRRR------------------------- 475
           +   H D+  F+            L+ N  DD                            
Sbjct: 257 MRVSHPDIIHFIHAKNKDVSLKESLKLNDPDDFEHNSFSEALEEASELIDEDGQIPKHLR 316

Query: 476 ------THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                   + N +  + D FM  +  +  +TL +P    + H    K  E+ Y  Y+ + 
Sbjct: 317 NAAEGHLSNFNISVGVTDGFMDALFNDEEYTLINPRT-QEPHIATAKTEEM-YSWYDLED 374

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-------------QHV 576
              E+     I A  LW +M+    E G P + + D  N                     
Sbjct: 375 H-VEVGEELSIPATVLWERMIEGAHENGEPGVVYIDQINKDHSYDVESHCTIVDDDPMSQ 433

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY------------------ 618
             VH++N C E  L     E   CNL  INL      +  D+                  
Sbjct: 434 YEVHATNPCGEQQLM----EGEACNLCHINLSTIVDQDAPDWRDWLDTHSDDYISLAECV 489

Query: 619 ----------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                     ++L S I+T    L+NV+ ++   ++K +++   +R IGLG+MG      
Sbjct: 490 DNYLEVALDYEELDSRIQTGTHFLENVVTMSDFPLDKIEQTVADNRKIGLGIMGLAQMYI 549

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L + Y + E  EIA++ M+ I+  +   S ELAQ RG +++++ S +     P+D    
Sbjct: 550 QLGVKYGTKEGNEIAEQVMKHINHGSKQVSHELAQRRGVFANWEDSKYAS---PLDYEEW 606

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 E A                    +RN N   IAPT T + +   +   +P Y  
Sbjct: 607 FERQTGESAAEYAD------------GFKIRNHNTTTIAPTGTTSMLGNTTGGCEPMYNV 654

Query: 789 LYVKSNMS---GDFTVV--NSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERI 837
            Y K+      GD  +V  + + +  L+  D+  +A+  + +        DG + ++E +
Sbjct: 655 AYYKNVSGDVQGDEMLVEFDDYFMRMLEANDVDADAVKQEAQELMQANEFDG-VDDLETV 713

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMG 896
           P+ L ++  T  ++            QK +D A S        S  +    ++   +  G
Sbjct: 714 PERLTELFVTTADLSAHQHASVQCALQKGVDAAISKTTNAPHDSSLEDAKEVFEYIYKNG 773

Query: 897 LKTTYYLRSRSATSVEKST 915
            K   Y R  +      +T
Sbjct: 774 GKGVTYYRDGTRAKQVLTT 792


>gi|13470431|ref|NP_101999.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           loti MAFF303099]
 gi|14021172|dbj|BAB47785.1| ribonucleotide reductase [Mesorhizobium loti MAFF303099]
          Length = 1312

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 157/731 (21%), Positives = 262/731 (35%), Gaps = 117/731 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F L+ +      +       A  +  +   P    +  E  V + L   
Sbjct: 83  KNPDGSVV---FRLDNIDVPAQFSQVAADILAQKYFRKAGVPARLKKVEENDVPSFLWRS 139

Query: 272 SMMDFDLVYLANDLKY--ERDFA--FEYL-GLQI---LYDRYFLHINGSRIEMPQAFFM- 322
              + +L  L    +Y  E D    F+ L G          YF     +R    +  +M 
Sbjct: 140 VADEAELAKLPEAERYGSEIDARQVFDRLAGTWTYWGWKGGYFKSEEDARAFRDELAYML 199

Query: 323 ---RVA--------MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
              RVA         GL             FY             T   S   HPQ  +C
Sbjct: 200 ATQRVAPNSPQWFNTGLHWAYGIDGPSQGHFY-----VDPFTGKLTKSKSSYEHPQPHAC 254

Query: 372 FLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  V DDL    GI       A L KY  G G++++ +RG G  +    G+S G++ FL
Sbjct: 255 FIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLS-GGGRSSGLMSFL 313

Query: 429 KVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR--------------------- 466
           K+ +  A A+  G   R+ A    ++  H D+EEF+D +                     
Sbjct: 314 KIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVNEEQKVASLVTGSKIVKKHL 373

Query: 467 ----------KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNAG-------WT 500
                     +  G+D          +R       + +P+ ++ RV Q A        + 
Sbjct: 374 EAIMKACVNCEGNGEDCFDPAINTALKREIKAAKKSAVPENYIYRVIQFAKQGYKSMSFK 433

Query: 501 LFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRKISAVALWR 547
            +  D  SD +                 F  A E+        R + KV + + A  LW 
Sbjct: 434 TYDTDWDSDAYLTVSGQNSNNSVSLKDNFLRAVEDDADWHLTARKDGKVLKTLKARDLWE 493

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+    + +  P + F    N        G + +SN C+E        +   CNL SINL
Sbjct: 494 KIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMFL----DDTACNLASINL 549

Query: 608 LAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L +  A+   D      T+R    VL+  + +     ++  K ++ +R +GLG       
Sbjct: 550 LPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKLSYEYRTLGLGYANIGGL 609

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-------------- 712
           L    IPY S E   I       ++  A S S E+A E GA+  +               
Sbjct: 610 LMTSGIPYDSDEGRAICAALTAIMTGVAYSTSAEMASELGAFPDYDRNAQNMLRVMRNHR 669

Query: 713 ----GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G         ++ + L+A    + A+   ++  WD   +  +  G RN+    IAP
Sbjct: 670 RAAYGDKDGYEKLAVNPVPLVASDLKQQALAEHAKAAWDRAIELGEEHGYRNAQATVIAP 729

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI  +    +  I+P +  +  K    G +  + +  V E  +   + E+ I++++ +
Sbjct: 730 TGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAY 789

Query: 828 DGSIGNIERIP 838
               GN+ + P
Sbjct: 790 AVGHGNLNQAP 800



 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 11/152 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 843 WVKETFGFTDEQLNDFSFEMLPAMGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLAVFDC 902

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 903 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 962

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
                R  S  S   +     DG+ +     +
Sbjct: 963 ANALYRDGSKLSQPLNASLLADGEEDEDEAVE 994


>gi|299133758|ref|ZP_07026952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
 gi|298591594|gb|EFI51795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
          Length = 1250

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/647 (19%), Positives = 224/647 (34%), Gaps = 129/647 (19%)

Query: 316 MPQAFFMRVAMG---------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG---- 362
             +  F R+A               E +      E   +L+      ++P  FN+G    
Sbjct: 105 TAKQVFDRLAGCWTYWGWKGGYFTSEDDAHAFHDELRFMLARQMVAPNSPQWFNTGLHWA 164

Query: 363 --------------------------TRHPQLSSCFLTTVPDDLY---GIFGALQENAML 393
                                       HPQ  +CF+  + DDL    GI       A L
Sbjct: 165 YGIDGPGQGHYYVDWKTGKLTKSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARL 224

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
            KY  G G++++ +RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    +
Sbjct: 225 FKYGSGTGSNFSRLRGEGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVV 283

Query: 453 ETWHIDVEEFLDLR-------------------------------KNTGDD--------- 472
           +  H D+E ++D +                               +  GDD         
Sbjct: 284 DADHPDIETYIDWKVREEQKVAALVTGSKINQKHLKAIMKACVNCEGPGDDCYLPEKNPA 343

Query: 473 RRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG---------- 515
            +R   +     + D  +KRV Q       +  +  +  D  S+ +              
Sbjct: 344 LKREIKLARRALVTDNMIKRVIQFARQGYTDIAFDTYDTDWDSEAYLTVSGQNSNNSVSL 403

Query: 516 -KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
             +F  A E         R   KV + + A  LW K+    + +  P + F    N    
Sbjct: 404 KDDFLRAVETDGPWNLIGRTNGKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHT 463

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVR 630
            +  G + +SN C+E        +   CNL S NLL  +  +  +FD D      R    
Sbjct: 464 CKASGDIRASNPCSEYMFL----DDTACNLASANLLTFYDTHTRRFDADAYEHLCRLWTI 519

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL+  + +     +   + ++  R +GLG       L  + +PY S E   +       +
Sbjct: 520 VLEISVMMAQFPSKAIAELSYEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIM 579

Query: 691 SFHAISASVELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEV 732
           +  A + S E+A E G +  +                   G         ++ + L    
Sbjct: 580 TGTAYATSAEMAAELGTFPGYKKNASHMLRVIRNHRRAAHGEAAGYEALAVNPVPLDHAS 639

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYV 791
             +  +   ++  WD   +  K  G RN+    +APT TI  +    +  I+P +  +  
Sbjct: 640 CPQADIVDHAKAVWDRALELGKANGFRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKF 699

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           K    G +  + +  V E  +   + E+ I++++ +    G++   P
Sbjct: 700 KKLAGGGYWKIINRAVPEALRALGYRESEIAEIEAYAVGHGSLSNAP 746



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++ ++     V+N    + L         + +   +  G  ++     + D+   +   
Sbjct: 789 FIRDSLHIAPEVMNVPGFDLLAALGFSKRDIEAANVHICGAMTVEGAPHLKDEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|218463594|ref|ZP_03503685.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 1170

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/573 (20%), Positives = 210/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 167 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 226

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 227 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 285

Query: 469 TGDDRRRTHDMNTAN-----------------------------------------WIPD 487
                      +                                             +P+
Sbjct: 286 EEQKVAALVTGSKIVARHLKAIMKACVNCDGGDNGDCFDPAKNPALKREIRAAKKDQVPE 345

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN     
Sbjct: 346 NYVQRVIQFARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWN 405

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 406 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 465

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 466 YMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKR 521

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 522 IAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAEL 581

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          ID + L+     +  +   ++  WD
Sbjct: 582 GPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWD 641

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 642 KALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 701

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V E  +   + E+ I++++ +    GN+ + P 
Sbjct: 702 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAPA 734



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 850 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLKANALYRDGSK 905


>gi|190891445|ref|YP_001977987.1| ribonucleotide-diphosphate reductase [Rhizobium etli CIAT 652]
 gi|190696724|gb|ACE90809.1| putative ribonucleotide-diphosphate reductase protein [Rhizobium
           etli CIAT 652]
          Length = 1270

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 214/572 (37%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD---- 464
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++    
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 465 ----------------------------LRKNTGDDR--------RRTHDMNTANWIPDL 488
                                          + GD          +R       + +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACFNCEGDNGDCFDPAKNPALKREIRAAKKDQVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           +++RV Q       +  +  +  D  S+ +                +F  A EN    + 
Sbjct: 360 YVQRVIQFARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWKL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E 
Sbjct: 420 TARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NLL     A  + +       +R    VL+  + +     ++ 
Sbjct: 480 MFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E G
Sbjct: 536 AELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELG 595

Query: 707 AYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + +F  +                          ID + L+     +  +   ++  WD+
Sbjct: 596 PFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            +  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 747



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLKANALYRDGSK 918


>gi|159044334|ref|YP_001533128.1| ribonucleotide-diphosphate reductase subunit alpha [Dinoroseobacter
           shibae DFL 12]
 gi|157912094|gb|ABV93527.1| vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter
           shibae DFL 12]
          Length = 1224

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/568 (19%), Positives = 194/568 (34%), Gaps = 88/568 (15%)

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  
Sbjct: 182 GKLTKSTSSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRAE 241

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           G  +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF++ +   
Sbjct: 242 GEALS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFVNWKVKE 300

Query: 470 GDD-----------RRRTHDMNTA-----------------------------NWIPDLF 489
                           + +++  A                               IP+ +
Sbjct: 301 EQKVASLVAGSKMHEAKLNEIFAAIGEWDGLGEDAVDPTKNAALKSAIRAAKKVQIPETY 360

Query: 490 MKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-- 533
           +KRV                +  W   + + VS  +         A+    +     E  
Sbjct: 361 IKRVLDYAKQGYASIEFPTYDTDWDSEAYNSVSGQNSNNSVRVTDAFLKAVKDDADWELI 420

Query: 534 ----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                KV + I A  LW  +    +    P I F D  N        G +  SN C+E  
Sbjct: 421 RRTDGKVAKTIKARELWETIGHAAWACADPGIQFHDTVNDWHTCPEDGAIRGSNPCSEYM 480

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +   CNL S+NLL  + + +FD +      R     L+  + +     ++  + 
Sbjct: 481 FL----DDTACNLASMNLLTFYRDGKFDSEGYMHAARLWTLTLEISVLMAQFPSKEIAQR 536

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G + 
Sbjct: 537 SYDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVSYATSAEIAAEVGPFP 596

Query: 710 SFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +                   G            + L      +  + + +   WDE  K
Sbjct: 597 GYAKNADHMLRVIRNHRNAAYGKTDGYEALATKPVALDHANCPDQTLVKLAMSSWDEALK 656

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V   
Sbjct: 657 LGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAA 716

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIP 838
                +  A I ++  +    G +   P
Sbjct: 717 LDTLGYSSAQIEEIIAYAVGHGTLGNAP 744



 Score = 47.4 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 12/159 (7%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +      +N    + L+      + +   +D      ++     +  +   +   A  
Sbjct: 790 EVLGIPAAKLNDPTFDMLRHLGFAKKDIDLANDHVCGTMTLEGAPFLKAEHYSVFDCANP 849

Query: 851 IDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                         I   +  Q +I  A S  + + ++ + +     Y  +W +G K   
Sbjct: 850 CGKRGKRFLSVDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGTKANA 909

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
             R  S  S   +    V+    A  V +  S+     +
Sbjct: 910 LYRDGSKLSQPLAA-ALVEDDEEAAEVLETGSTMEKAQV 947


>gi|327193111|gb|EGE60021.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 1291

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 210/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 201 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 260

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 261 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 319

Query: 469 TGDDRRRTHDMNTAN-----------------------------------------WIPD 487
                      +                                             +P+
Sbjct: 320 EEQKVAALVTGSKIVARHLKTIMKACFNCEGGDNGDCFDPAKNPALKREIRAAKKDQVPE 379

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN    +
Sbjct: 380 NYVQRVIQFARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWK 439

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 440 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 499

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 500 YMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKR 555

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 556 IAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAEL 615

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          ID + L+     +  +   ++  WD
Sbjct: 616 GPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWD 675

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +     +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 676 KALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 735

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V +  +   + E+ I++++ +    GN+ + P 
Sbjct: 736 VPDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 768



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L       + + +   +  G  ++     +  +   +   
Sbjct: 810 FLKETLKVSDEQLADMSFNLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 869

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 870 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 929

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 930 ANALYRDGSK 939


>gi|90423882|ref|YP_532252.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90105896|gb|ABD87933.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB18]
          Length = 1262

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 138/687 (20%), Positives = 243/687 (35%), Gaps = 107/687 (15%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQ 318
             R + E         LA    Y   +  +Y       +   D  RY L         PQ
Sbjct: 97  NERFVSELSSKQVFDRLAGCWTYW-GWKGDYFSSEDDARAFNDELRYMLAKQMVAPNSPQ 155

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F      GL             FY       +     T   S   HPQ  +CF+  + D
Sbjct: 156 WFN----TGLHWAYGVDGPGQGHFY-----VDWKTGKLTKSKSAYEHPQPHACFIQGIQD 206

Query: 379 DLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           DL    GI       A L KY  G G++++ +RG G  +    G+S G++ FLK+ +  A
Sbjct: 207 DLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLS-GGGRSSGLMSFLKIGDRAA 265

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR---------------------------- 466
            A+  G   R+ A    ++  H D+E ++D +                            
Sbjct: 266 GAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKEEQKVAALVTGSKLNQKHLKAVLKAC 325

Query: 467 ---KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEV 507
              + +GDD          RR   +     + D  +KRV Q A        +  +  D  
Sbjct: 326 VNCEGSGDDCFDPEKNPALRREIKLARRALVQDAMIKRVIQYAKQGYKEIDFPTYDTDWD 385

Query: 508 SDLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           S+ +                +F  A E         R   KV + + A  LW K+    +
Sbjct: 386 SEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLIGRTNKKVMKTLKARDLWEKIGYAAW 445

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--A 612
            +  P + F    N     +  G + +SN C+E        +   CNL S NLL  +   
Sbjct: 446 ASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLTMYDTT 501

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            N+FD D      R    VL+  + +     ++  + ++  R +GLG       L  + +
Sbjct: 502 TNRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGL 561

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV 720
            Y S E   +       ++  A S S E+AQ+ G +  +K +                G 
Sbjct: 562 SYDSKEGRALCGALSAIMTGTAYSTSAEMAQKLGPFPGYKKNAGHMLRVIRNHRRAAHGE 621

Query: 721 ------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                   ++ + L      +  +   ++  WD+  +  +  G RN+    +APT TI  
Sbjct: 622 SRGYEGLAVNPVPLDHASCPQEDVVTHAKAAWDKALELGEAHGYRNAQTTVVAPTGTIGL 681

Query: 775 ICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +    +  I+P +  +  K    G +  + +  V    +   + E  I++++ +    G+
Sbjct: 682 VMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRILGYPEHQIAEIEAYAVGHGS 741

Query: 834 IERIPD-DLKKIHATAFEIDPMWLIES 859
           +   P  ++  + A  F  + +  +E+
Sbjct: 742 LSNAPAINVATLKAKGFTDEALKKVEA 768



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           +I     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TIEGAPHLKAEHYAVFDCANPCGKVGKRYLSVESHIRMMAATQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           +       Y  +W + LK    Y   S+
Sbjct: 891 TVDDCKSAYLLSWKLALKANALYRDGSK 918


>gi|126731267|ref|ZP_01747074.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
 gi|126708178|gb|EBA07237.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
          Length = 1220

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 133/652 (20%), Positives = 217/652 (33%), Gaps = 108/652 (16%)

Query: 278 LVYLANDLKYERDFAFEYL----GLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALK 331
              LA    Y   +   Y       +  YD  RY L    +    PQ F      GL   
Sbjct: 103 FDRLAGAWAYW-GWKGGYFTTEEDARAYYDEMRYMLATQVAAPNSPQWFN----TGLHWA 157

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQ 388
                     +Y       +         S   HPQ  +CF+ +V DDL    GI     
Sbjct: 158 YGIDGPGQGHYY-----VDYKTGKLVKSKSAYEHPQPHACFIQSVSDDLVSDGGIMDLWV 212

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447
             A L KY  G G +++ +R  G  +    GKS G++ FLK+ +  A A+  G   R+ A
Sbjct: 213 REARLFKYGSGTGTNFSSLRAQGEALS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAA 271

Query: 448 VCAYLETWHIDVEEFLDLRKNTGD--------------------DRRRTHD--------- 478
                +  H D+EEF++ +                         D  R  D         
Sbjct: 272 KMVICDADHPDIEEFINWKVKEEQKVASIVAGSKMHEKMLNGIFDAIRAWDGTEADAYEP 331

Query: 479 -MNTAN----------WIPDLFMKRVTQNA-------GWTLFSPDEVSDLH--------- 511
             NTA            IP+ ++KRV   A        +  +  D  S+ +         
Sbjct: 332 TANTALKKAVRTAKQAMIPETYIKRVLDYARQGYASIEFPTYDTDWDSEAYASVSGQNSN 391

Query: 512 ------DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                 D + K   +  +       R +  V + I A  LW ++    +    P I F D
Sbjct: 392 NSIRVTDAFLKA--VREDKPWELIRRTDGSVAKTIDAKELWEQIGHAAWACADPGIQFHD 449

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N        G +  SN C+E        +   CNL S+NLL    +  F  D      
Sbjct: 450 TVNAWHTCPEDGAIRGSNPCSEYMFL----DDTACNLASMNLLTFLKDGVFQSDDYMHAT 505

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R     L+  + +     ++  + ++  R +GLG       L  +   Y S E   +   
Sbjct: 506 RLWTLTLEISVTMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSEEGRALCGA 565

Query: 686 SMEFISFHAISASVELAQERGAYSSFK------------------GSLWDQGVFPIDSIG 727
               ++  + + S E+A E GA+S ++                  G         +  + 
Sbjct: 566 LTAIMTGVSYATSAEMAGELGAFSGYERNAKHMLKVIRNHRNAAWGKTTGYEKLEVKPVA 625

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
           L      +  +   +   WDE  K  +  G RN+    IAPT TI  +    +  I+P +
Sbjct: 626 LDHRNCPDATLVELAMASWDEALKLGERHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDF 685

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             +  K    G +  + +  V     +  +  A I ++  +      +   P
Sbjct: 686 ALVKFKKLAGGGYFKIINRSVPAALAKLGYGSAEIEEIIGYAVGHQTLGNAP 737



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM------ 854
           N    + L+        +   +D      ++     + ++   +   A            
Sbjct: 793 NDPTFDMLRHLGFKKAEIDAANDHVCGTMTLEGAPHLKEEHYSVFDCANACGKKGKRYLS 852

Query: 855 --WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + +    + +     Y  +W +G K    Y   S+ + 
Sbjct: 853 VEAHIRMMAAAQSFISGAISKTINMPNTATIEDCQKAYELSWSLGTKANALYRDGSKLSQ 912

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  +     +   +       L 
Sbjct: 913 PLASALVEDDEDAAEILETGNAQEKAQVLA 942


>gi|260460764|ref|ZP_05809014.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
 gi|259033341|gb|EEW34602.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
          Length = 1263

 Score =  287 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 130/570 (22%), Positives = 218/570 (38%), Gaps = 89/570 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSSYEHPQPHACFIQGVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSFLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF+D + N
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVN 299

Query: 469 TG------------------------------DDRRRTHDMNTAN----------WIPDL 488
                                           DD      +NTA            +P+ 
Sbjct: 300 EEQKVASLVTGSKIVKKHLEAIMKACVNCEGHDDDCFDPAINTALKREIKAAKKSAVPEN 359

Query: 489 FMKRVTQNAG-------WTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++ RV Q A        +  +  D  SD +                +F  A E       
Sbjct: 360 YIYRVIQFAKQGYTSMSFKTYDTDWDSDAYLTVSGQNSNNSVSLKDDFLRAVEQDGDWHL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGKVLKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  +   CNL SINLL +  A+   D      T+R    VL+  + +     ++  
Sbjct: 480 MFL----DDTACNLASINLLPYRNADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIA 535

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K ++ +R +GLG       L    IPY S E   I       ++  A + S E+A E GA
Sbjct: 536 KLSYEYRTLGLGYANIGGLLMTSGIPYDSDEGRAICAALTAIMTGTAYATSAEMASELGA 595

Query: 708 YSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           ++ +                   G         ++ + L+A    + A+   ++  WD  
Sbjct: 596 FADYDRNAQNMLRVMRNHRRAAYGDKDGYEKLAVNPVPLVASDLKQQALADHAKAAWDRA 655

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V 
Sbjct: 656 IELGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVP 715

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           E  +   + EA +++++ +    GN+ + P
Sbjct: 716 EALRTLGYSEAQLAEIEAYAVGHGNLNQAP 745



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 788 WVKETFGFTDEQLNDFSFEMLPALGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 847

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 848 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 907

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
               Y   S+ +  +  S L  V+   +  
Sbjct: 908 ANALYRDGSKLSQPLNSSLLADVEDDEDEA 937


>gi|163746552|ref|ZP_02153910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
 gi|161380437|gb|EDQ04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
          Length = 1217

 Score =  287 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/571 (20%), Positives = 201/571 (35%), Gaps = 88/571 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +
Sbjct: 171 YKTGKLTRSKSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+++F++ +
Sbjct: 231 RGEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIQDFINWK 289

Query: 467 ----------------------------------KNTGDDRRRTHDMNTA------NWIP 486
                                                  D  +   +  A        IP
Sbjct: 290 VLEEQKVASIVAGSKMHEQKLNLLFDAIKAWDGKAEDAYDPAKNDQLKQAIREAKKVTIP 349

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--E 526
           + ++KRV   A        +  +  D  S+ ++                F  A E     
Sbjct: 350 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLTAVEKDADW 409

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R E +V + I A  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 410 ELISRTENRVTKTIRARDLWDQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFLKDGEFQVEDYMHASRLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGYSYDSDEGRALGGALTAIMTGVAYATSAEMAGELG 585

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+  +                   G         +  + L      +  +   ++  WDE
Sbjct: 586 AFPGYSKNAAHMLRVIRNHRQAAYGEAEGYEQLSVKPVPLDHANCPQDGLVDVAKSCWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             K  +T G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALKLGETHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
               ++  +  A I ++  +    G I   P
Sbjct: 706 PAALEKLGYGSAQIEEIVGYAVGHGTIGNAP 736



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVE 912
            I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ +  + 
Sbjct: 855 HIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGIKANALYRDGSKLSQPLA 914

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            + ++  +     +    P+     L 
Sbjct: 915 AALVEDDEDAAETLESGTPHEKAAVLA 941


>gi|158422892|ref|YP_001524184.1| ribonucleotide-diphosphate reductase subunit alpha [Azorhizobium
           caulinodans ORS 571]
 gi|158329781|dbj|BAF87266.1| ribonucleotide reductase large subunit [Azorhizobium caulinodans
           ORS 571]
          Length = 1241

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 135/634 (21%), Positives = 229/634 (36%), Gaps = 99/634 (15%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
             RY L +       PQ F      GL             FY    S   + ST     S
Sbjct: 139 EHRYMLAMQMVAPNSPQWFN----TGLHWAYGIDGPGQGHFYVDYKSGELLAST-----S 189

Query: 362 GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
              HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G  +    
Sbjct: 190 AYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRGEGERLS-GG 248

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------- 466
           GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++ +           
Sbjct: 249 GKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIESYVNWKVLEEQKVASLV 308

Query: 467 --------------------KNTGD---------DRRRTHDMNTANWIPDLFMKRVTQNA 497
                               + TGD           +R         + D  ++RV Q A
Sbjct: 309 TGSRINAKHLKAVLKACVNCEGTGDSCFDPEKNPALKREIKAARKAGVVDAAIRRVIQYA 368

Query: 498 GWTLFSPDEVSDLHDLYGK------------------EFEIAYEN--YERQADRGEIKVF 537
                  D      D  G+                  +F  A E         R + KV 
Sbjct: 369 RQGFTDIDVAIYDTDWDGEAYLTVAGQNSNNSVRVTDDFLRAVEEDADWNLIRRTDGKVH 428

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW K+ +  +    P I F    N        G + +SN C+E        + 
Sbjct: 429 KTVKARELWDKIGSAAWHCADPGIQFHTTINDWHTCPSGGEIRASNPCSEYMFL----DD 484

Query: 598 AVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             CNL S+NLL    +  +FD +     +R    VL+  + +      +  + ++ +R +
Sbjct: 485 TACNLASLNLLQFRDSEKRFDVESFEHAVRLWTVVLEISVLMAQFPSRRIAELSYEYRTL 544

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG       L    IPY S E   I       ++    + S E+A+E G + +++ +  
Sbjct: 545 GLGYANIGGLLMTAGIPYDSAEGRAICGAISAIMTGICYATSAEMAKELGPFPAYEQNAT 604

Query: 715 ----------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                         G         I  + L      +  +   ++  WD+     +  G 
Sbjct: 605 SMLRVIRNHRRAAYGEAKGYEGLSIAPVPLDHASCKDERLVAHAKAAWDKALADGEKHGY 664

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   + 
Sbjct: 665 RNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINGAVPEALRTLGYS 724

Query: 818 EAMISDLKYHDGSIGNIERIPD-DLKKIHATAFE 850
           EA I++++ +    G++ + P  +   + A  F+
Sbjct: 725 EAQIAEIEAYAVGHGSLAQAPAINHGSLKAKGFD 758



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W + LK    Y   S+
Sbjct: 862 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCLSSYLLSWRLALKANALYRDGSK 917


>gi|126735671|ref|ZP_01751416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
 gi|126714858|gb|EBA11724.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
          Length = 1218

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/619 (20%), Positives = 217/619 (35%), Gaps = 97/619 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL             FY       +     T   S  
Sbjct: 133 RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHFY-----VDYQSGELTKSTSSY 183

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  +    GK
Sbjct: 184 EHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGDGEALS-GGGK 242

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL-------------- 465
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++               
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWKVIEEQKVASIVAG 302

Query: 466 --------------------RKNTGDDRRRTHDMNTAN------WIPDLFMKRVTQNA-- 497
                                + +  D +    + +A        IP+ ++KRV   A  
Sbjct: 303 SKMHARYLNAIFAAIKSWDGEEVSAYDPKTNETLASAVKDAKKSAIPETYIKRVLDYAKQ 362

Query: 498 -----GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRK 539
                 +  +  D  S+ +                 F  A E+    +  +R   +V + 
Sbjct: 363 GYSSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTDAFLKAVEDDADWKLINRRNGEVAKI 422

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW ++    +    P I + D  N        G +  SN C+E        +   
Sbjct: 423 IKARELWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGSNPCSEYMFL----DDTA 478

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL  + +  F  +      R     L+  + +     ++  + ++  R +GLG
Sbjct: 479 CNLASMNLLTFYKDGTFQAEDYMHATRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLG 538

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------- 712
                  L  +   Y S E   +       +S  + + S E+A E GA+  +K       
Sbjct: 539 YANIGGLLMNMGFGYDSDEGRAMGAALTAIMSGVSYATSAEMAGELGAFPGYKKNSKHML 598

Query: 713 -----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                      G         +  + L      +  +   +   WDE  K  K  G RN+
Sbjct: 599 RVIKNHRQAALGKADGYDKLDVKPVPLDHANCPDQRLIELAVGSWDEALKLGKKHGYRNA 658

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI  +    +  I+P +  +  K    G +  + +  V    ++  +  A 
Sbjct: 659 QVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALEKLGYGSAQ 718

Query: 821 ISDLKYHDGSIGNIERIPD 839
           I ++  +    G+I + P 
Sbjct: 719 IEEIIAYAVGHGSIGQAPA 737



 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +      +N    + L+      + +   +D      ++     + D+   +   A  
Sbjct: 782 KTLGIPAEKLNDPTFDLLRHLGYSKQDIDAANDHVCGTMTLEGAPFLKDEHMTVFDCANP 841

Query: 851 IDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--T 899
                         I   +  Q +I  A S  + + ++ + +     Y  +W +G+K   
Sbjct: 842 CGKKGKRYLSVDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANA 901

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            Y   S+ +  +  + ++  +     +   + +     L 
Sbjct: 902 LYRDGSKLSQPLAAALVEDDEDAQETLETGNHHEKAAVLA 941


>gi|254510648|ref|ZP_05122715.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
 gi|221534359|gb|EEE37347.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
          Length = 1232

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 136/648 (20%), Positives = 226/648 (34%), Gaps = 114/648 (17%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y       +     T   S  
Sbjct: 159 RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSKSAY 209

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  +    GK
Sbjct: 210 EHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEALS-GGGK 268

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR------------- 466
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +             
Sbjct: 269 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVIEEQKVASIVAG 328

Query: 467 ---------------------KNTGDDRRRTHDMNTAN------WIPDLFMKRVTQNA-- 497
                                     D  +   + +A        IP+ ++KRV   A  
Sbjct: 329 SKMHEKMLNGIFEAIRTWDGATEDAYDPNKNDSLKSAVREAKKVAIPETYIKRVLDYARQ 388

Query: 498 -----GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--ERQADRGEIKVFRK 539
                 +  +  D  S+ +                 F  A E        +R + KV + 
Sbjct: 389 GHDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLTAVEKDADWELINRTDGKVAKT 448

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW K+    +    P I F D  N        G +  SN C+E        +   
Sbjct: 449 VKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFL----DDTA 504

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL    + +F         R     L+  + +     ++  + ++  R +GLG
Sbjct: 505 CNLASMNLLTFLKDGEFQAADYMHASRLWTLTLEISVTMAQFPSKEIAQLSYDFRTLGLG 564

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS----- 714
                  L  +   Y S E   I       ++  A + S E+A E G +  ++ +     
Sbjct: 565 YANIGGLLMNMGYSYDSDEGRAICGALTAIMTGVAYATSAEIAGELGPFKGYERNADHML 624

Query: 715 -------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                     QGV        +  + L      +  +   +   WDE     +  G RN+
Sbjct: 625 RVIRNHRRASQGVTEGYEKLAVKPVPLDHGNCPDKRLIDLAMSAWDEALNLGEKNGYRNA 684

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI  +    +  I+P +  +  K    G +  + +  V    ++  +  A 
Sbjct: 685 QATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALEKLGYSSAQ 744

Query: 821 ISDLKYH---DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
           I ++  +    G+IGN   I           P++L K+ A   +AF+I
Sbjct: 745 IEEIVGYAVGHGTIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDI 792



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 13/153 (8%)

Query: 800 TVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-- 855
           T +N    + L+        +   +D      ++     + ++   I   A         
Sbjct: 815 TKLNDPTFDLLRHLGFTRADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKR 874

Query: 856 ------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
                  I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+
Sbjct: 875 FLGVDSHITMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 934

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  +  + ++  D     +           L 
Sbjct: 935 LSQPLAAALVEDDDEAAEVLESGSTQEKAVVLA 967


>gi|221638914|ref|YP_002525176.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides KD131]
 gi|221159695|gb|ACM00675.1| Ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides KD131]
          Length = 1218

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/625 (19%), Positives = 215/625 (34%), Gaps = 118/625 (18%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E +      E  ++L+      ++P  FN+G                        
Sbjct: 125 GYFSTEADARAYYDEMRHMLARQMAAPNSPQWFNTGLHWAYGIDGPSQGHFYVDHATGKL 184

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 185 QKSDSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+F++ +      
Sbjct: 245 LS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQK 303

Query: 473 -----------RRRTHDMNTAN-----------------------------WIPDLFMKR 492
                        + +D+  A                               IP+ ++ R
Sbjct: 304 VASLVAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINR 363

Query: 493 VTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRG 532
           V Q A        +  +  D  S+ +     +               +  +       R 
Sbjct: 364 VLQYARQGFSSIEFPTYDTDWDSEAYTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRT 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + KV + I A  LW ++    +    P I F D  N        G +  SN C+E     
Sbjct: 424 DGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +   CNL S+NLL  F   +FD +      R     L+  + +     ++  + ++ 
Sbjct: 483 ---DDTACNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYD 539

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S ++
Sbjct: 540 FRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVAYATSAEMAGELGAFSGYE 599

Query: 713 GSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +                          +  + L      +  +   ++  WDE  +  +
Sbjct: 600 RNAAHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGE 659

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    + 
Sbjct: 660 AHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALET 719

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             +  A IS +  +    G +   P
Sbjct: 720 LGYASAQISQIVAYAVGHGTLANCP 744



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + +    +  +    Y  +  +G+K    Y   S+ +  
Sbjct: 861 ESHIHMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +    P      L 
Sbjct: 921 LASALVEDDEEAEEILATGTPQEKAIVLA 949


>gi|331668938|ref|ZP_08369786.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064132|gb|EGI36043.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 412

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 178/430 (41%), Gaps = 63/430 (14%)

Query: 506 EVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
               L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     TG  +I 
Sbjct: 11  TYRGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQ 66

Query: 563 FKDPCNIRSPQ-QHVGVVHSSNLCTEIT--------LNSSSEETAVCNLGSINLLAHFAN 613
             D CN  SP    +  V  SNLC EI         +N  + E A+C L + NL A  + 
Sbjct: 67  NVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINS- 125

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L      
Sbjct: 126 ----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 181

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+        
Sbjct: 182 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDL--- 238

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K+
Sbjct: 239 -DAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKA 297

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G    V         +       ++ ++  +DG +                      
Sbjct: 298 SKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------------- 331

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSR 906
                     QK+IDQ+ S N   D    PSGK    +L      A+  G+KT YY  +R
Sbjct: 332 -----LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTR 386

Query: 907 SATSVEKSTL 916
                 +  L
Sbjct: 387 DGAEDAQDDL 396


>gi|192291697|ref|YP_001992302.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192285446|gb|ACF01827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris TIE-1]
          Length = 1257

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 240/685 (35%), Gaps = 107/685 (15%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQA 319
            R   E         LA    Y   +   Y       +  +D  RY L +       PQ 
Sbjct: 98  ERYTSEHSAKQVFDRLAGCWTYW-GWKGSYFSSEDDARAFFDELRYMLAMQMVAPNSPQW 156

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F      GL             +Y       +     T   S   HPQ  +CF+  + DD
Sbjct: 157 FN----TGLHWAYGVDGPGQGHYY-----VDYKTGKLTKSKSAYEHPQPHACFIQGIEDD 207

Query: 380 LY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L    GI       A L KY  G G++++ +RG G  +    GKS G++ FLK+ +  A 
Sbjct: 208 LVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGKSSGLMSFLKIGDRAAG 266

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------------------------- 466
           A+  G   R+ A    ++  H D+E ++D +                             
Sbjct: 267 AIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAALVTGSKVNQKHLKAILKACV 326

Query: 467 --KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVS 508
             + +GDD          RR   +     + D  +KRV Q A        + ++  D  S
Sbjct: 327 NCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQFAKQGYKEIDFPIYDTDWDS 386

Query: 509 DLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + +                +F  A E         R   KV + + A  LW K+ T  + 
Sbjct: 387 EAYLTVAGQNSNNSVSLKDDFLRAVETDGDWHLTARTNKKVVKTLKARDLWEKIGTAAWA 446

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613
           +  P + F    N     +  G + +SN C+E        +   CNL S NLLA      
Sbjct: 447 SADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLAFYDVGA 502

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N+FD D      R    VL+  + +     ++  + ++  R +GLG       L  + + 
Sbjct: 503 NRFDLDAYEHLCRLWTVVLEVSVLMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGLS 562

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV- 720
           Y S E   +       ++  A + S E+A + GA+  +K +                G  
Sbjct: 563 YDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAFPGYKKNADHMLRVIRNHRRAAHGES 622

Query: 721 -----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                  ++ + L             ++  WD+  +  +  G RN+    IAPT TI  +
Sbjct: 623 RVYEALSVNPVPLDHTNCPIPDAVAHAKAAWDKALELGEQHGYRNAQVTVIAPTGTIGLV 682

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    +   + E  I +++ +    G++
Sbjct: 683 MDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRVLGYPEHQIQEIEAYAVGHGSL 742

Query: 835 ERIPD-DLKKIHATAFEIDPMWLIE 858
              P  +   + A  F  + +  +E
Sbjct: 743 SNAPAINASTLKAKGFTDEALAKVE 767



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|39936042|ref|NP_948318.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39649896|emb|CAE28418.1| ribonucleotide reductase [Rhodopseudomonas palustris CGA009]
          Length = 1257

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 240/685 (35%), Gaps = 107/685 (15%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQA 319
            R   E         LA    Y   +   Y       +  +D  RY L +       PQ 
Sbjct: 98  ERYTSEHSAKQVFDRLAGCWTYW-GWKGSYFSSEDDARAFFDELRYMLAMQMVAPNSPQW 156

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F      GL             +Y       +     T   S   HPQ  +CF+  + DD
Sbjct: 157 FN----TGLHWAYGVDGPGQGHYY-----VDYKTGKLTKSKSAYEHPQPHACFIQGIEDD 207

Query: 380 LY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L    GI       A L KY  G G++++ +RG G  +    GKS G++ FLK+ +  A 
Sbjct: 208 LVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGKSSGLMSFLKIGDRAAG 266

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------------------------- 466
           A+  G   R+ A    ++  H D+E ++D +                             
Sbjct: 267 AIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAALVTGSKVNQKHLKAILKACV 326

Query: 467 --KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVS 508
             + +GDD          RR   +     + D  +KRV Q A        + ++  D  S
Sbjct: 327 NCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQFAKQGYKEIDFPIYDTDWDS 386

Query: 509 DLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + +                +F  A E         R   KV + + A  LW K+ T  + 
Sbjct: 387 EAYLTVAGQNSNNSVSLKDDFLRAVETDGDWHLTARTNKKVVKTLKARDLWEKIGTAAWA 446

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613
           +  P + F    N     +  G + +SN C+E        +   CNL S NLLA      
Sbjct: 447 SADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLAFYDVGA 502

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N+FD D      R    VL+  + +     ++  + ++  R +GLG       L  + + 
Sbjct: 503 NRFDLDAYEHLCRLWTVVLEVSVLMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGLS 562

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV- 720
           Y S E   +       ++  A + S E+A + GA+  +K +                G  
Sbjct: 563 YDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAFPGYKKNADHMLRVIRNHRRAAHGES 622

Query: 721 -----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                  ++ + L             ++  WD+  +  +  G RN+    IAPT TI  +
Sbjct: 623 RVYEALSVNPVPLDHTNCPIPDAVAHAKAAWDKALELGEQHGYRNAQVTVIAPTGTIGLV 682

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    +   + E  I +++ +    G++
Sbjct: 683 MDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRVLGYPEHQIQEIEAYAVGHGSL 742

Query: 835 ERIPD-DLKKIHATAFEIDPMWLIE 858
              P  +   + A  F  + +  +E
Sbjct: 743 SNAPAINASTLKAKGFTDEALAKVE 767



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|332977689|gb|EGK14454.1| ribonucleoside-diphosphate reductase [Desmospora sp. 8437]
          Length = 1120

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/571 (21%), Positives = 216/571 (37%), Gaps = 80/571 (14%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E + E    E   +L       ++P  FN+G                        
Sbjct: 123 GYFDTEEDAEAFYDELVYMLLHQMAAPNSPQWFNTGLAFAYGITGKAQGHYYVDPETEEL 182

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                    PQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 183 RRGEDAYSRPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNIRGKGEP 242

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    G S G++ FLK+ +  A A+  G   R+ A    L+  H DVEEF++ + N    
Sbjct: 243 LS-GGGTSSGLLSFLKIGDRAAGAIKSGGTTRRAAKMVTLDLDHPDVEEFINWKSNEEKK 301

Query: 473 RRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
            R   +     ++  + +     QN+  ++  P+E   + D  G               R
Sbjct: 302 VRALIEAGYDPSFNGEAYETISGQNSNNSVRVPNEFFRVLDEDGG---------WNLIRR 352

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH---------VGVVHSS 582
            + KV + + A  LW+++    +E   P + +    N                   +++S
Sbjct: 353 TDGKVSKTVPARDLWKQISEAAWECADPGLQYDGTINEWHTTPAGMDGQLGARHNRINAS 412

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E     ++     CNL S+NL+      N +FD   L    R    VL+  + +  
Sbjct: 413 NPCSEYMFLDNT----ACNLASLNLMKFYDVENTRFDIPALKHASRLWTVVLEISVLMAQ 468

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +   +  + ++ +R +GLG     + L +  IPY S EA+ I       ++  A + S E
Sbjct: 469 YPSREIARLSYEYRTLGLGYANIGTVLMVSGIPYDSDEALAITGAVTAIMTGTAYATSAE 528

Query: 701 LAQERGAYSSFKGSLW----------------DQGVFPIDSIGLL--AEVRDELAMNRTS 742
           +A+E G + +F  +                      +   ++  +          +   +
Sbjct: 529 MARELGPFKAFPLNREHMLRVIRNHRRAAYNVADEEYEGLTVPPMGIHPTHCPPELLEAA 588

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV 801
           RL WDE  +  +  G RN+    +APT TI  +    +  ++P +  +  K    G +  
Sbjct: 589 RLCWDEALELGEKHGYRNAQSTLLAPTGTIGLLMDCDTTGVEPDFALVKFKKLAGGGYFK 648

Query: 802 V-NSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + N  +   LK     +  +   L Y  G++
Sbjct: 649 IANQSIQPALKNLGYSEAEIREILTYVTGTL 679



 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 835 ERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKL 885
             + ++   +  TA          I  M  +   +  Q ++  A S  + +   S  + +
Sbjct: 774 PHLKEEHYPVFDTANPCGKHGKRFIHYMGHLRMMAAAQPFLSGAISKTINMPGDSTVEDI 833

Query: 886 DFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              Y + W +GLK    Y   S+S+  +        DG+           +   L   +S
Sbjct: 834 QHAYHEGWSLGLKAVALYRDGSKSSQPLNSRGDDKEDGEEAEANAKVRMETAEPLAAAAS 893


>gi|255263212|ref|ZP_05342554.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
 gi|255105547|gb|EET48221.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
          Length = 1273

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/620 (19%), Positives = 212/620 (34%), Gaps = 101/620 (16%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL              Y             T   S  
Sbjct: 183 RYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDHETGVLTKSKSSY 233

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  +    GK
Sbjct: 234 EHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGAGEALS-GGGK 292

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD------- 472
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +             
Sbjct: 293 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIIDADHPDIEDFINWKVLEEQKVASIVAG 352

Query: 473 ----RRRTHDMNTA-----------------------------NWIPDLFMKRVTQNA-- 497
                 + + +  A                               IP+ ++KRV   A  
Sbjct: 353 SKMHEEKLNAIFAAIRSWDGAEADAYDPKVNSALKDAVRSAKKVSIPETYVKRVLDYAKQ 412

Query: 498 -----GWTLFSPDEVSDLH---------------DLYGKEFEIAYENYERQADRGEIKVF 537
                 +  +  D  S+ +               D + K  E+  +      +R    V 
Sbjct: 413 GHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVEVDADW--ELVNRKNGNVS 470

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + I A  LW ++    +    P I + D  N        G +  SN C+E        + 
Sbjct: 471 KTIKARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYMFL----DD 526

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNL S+NLL  + + QF  ++     R     L+  + +     ++  + ++  R +G
Sbjct: 527 TACNLASMNLLTFYTDGQFQVEEYMHATRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLG 586

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL-- 715
           LG       L  +   Y S E   +       ++  + + S E+A E GA++ +  +   
Sbjct: 587 LGYANIGGLLMNMGHGYDSSEGRALCGALTAILTGVSYATSAEIAGELGAFAGYGKNKDH 646

Query: 716 ----------WDQG------VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
                        G            + L      +  +   +   WDE     +  G R
Sbjct: 647 MLRVIRNHRNAAYGATGGYEKLATKPVPLDHAGCPDSRLVELAMSSWDEALSLGEKHGYR 706

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    ++  +  
Sbjct: 707 NAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPASLEKLGYGS 766

Query: 819 AMISDLKYHDGSIGNIERIP 838
           A I ++  +     ++   P
Sbjct: 767 AQIEEIVSYAVGHASMGNAP 786



 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+        +   +D      ++     + ++   +   A            
Sbjct: 842 NDPSFDLLRHLGFTRADIDAANDHVCGTMTLEGAPHLKEEHYNVFDCANPCGKKGKRFLS 901

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + +     Y  +W + +K    Y   S+ + 
Sbjct: 902 VDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLAIKANALYRDGSKLSQ 961

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  D  L  +   + +     L 
Sbjct: 962 PLAAALVEDDDEALETLESGNHHEKATVLA 991


>gi|227822105|ref|YP_002826076.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           fredii NGR234]
 gi|227341105|gb|ACP25323.1| ribonucleotide-diphosphate reductase alpha subunit [Sinorhizobium
           fredii NGR234]
          Length = 1263

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/572 (19%), Positives = 209/572 (36%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R 
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRA 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 TGDDR----------------------------------------RRTHDMNTANWIPDL 488
                                                        +R         +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACVNCDGSDDACFDPKQNPALKREIRAAKQALVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQ-- 528
           ++KRV Q       +  +  +  D  S+ +                +F  A E  +    
Sbjct: 360 YVKRVIQFARQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVEADDEWNL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGRVMKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+     A  + +       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLMQFKDAATKRINIADYEHAVRLWTVVLEVSVMMAQFPSREI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY S E   IA      ++  A + S E++ + G
Sbjct: 536 AELSYEYRTLGLGYANIGGLLMSSGIPYDSAEGRAIAGALTAIMTGVAYATSAEISAKLG 595

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  F                   G         ++ + L+     +  +   ++  WDE
Sbjct: 596 PFPGFAPNRENMLRVMRNHRRAAHGETTGYEGLSVNPVALIHADCPDQELIAHAKSAWDE 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 AVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PEALRTLGYSESQIAEIEAYAVGHGNLNQAPA 747



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      + S   N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKGTLKVSDEQLASMDFNLLEHLGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|307717949|ref|YP_003873481.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
 gi|306531674|gb|ADN01208.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
          Length = 1120

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/666 (19%), Positives = 232/666 (34%), Gaps = 128/666 (19%)

Query: 296 LGLQILYDRYFLH-------INGSRIEMPQAFFMRVA---------MGLALKETEKEKRA 339
           +   IL  +YF             R    +  F R+A          G    E +     
Sbjct: 50  IATDILAQKYFRRRGVPVEVSPDGREYDARQVFHRLAYTWMWWGKEAGYFDSEEDARVFY 109

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG------------------------------TRHPQLS 369
            E   +L+      ++P  FN+G                                 PQ  
Sbjct: 110 DEVCYMLAHQMAAPNSPQWFNTGLHAVYGIEGPPQGHYYVDHRTGELKKSANAYSRPQPH 169

Query: 370 SCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +CF+  V DDL G   I  AL   A + KY  G G++++ +R  G  +    G S G++ 
Sbjct: 170 ACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPLS-GGGMSSGLMS 228

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF----------------------- 462
           FLKV + +A A+  G   R+ A    L+  H D+  F                       
Sbjct: 229 FLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILTFVRWKVEEEYKVASLVAGSRLVAR 288

Query: 463 -----LDLRKNTGDDRRRTHDMNTA----NWIPDLFMKRVTQNAG-------WTLFSPDE 506
                L   ++ GD                 +P+ F+ +V + A        + +++ D 
Sbjct: 289 HAREILSAYRSEGDVGAAAVRDAVGRALEAGVPEQFVHQVLRLAEEGMGPEEFPVYTTDW 348

Query: 507 VSDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTML 553
             + +                EF +A +         R   +V R + A  LW +++   
Sbjct: 349 EGEAYATVSGQSSNNSVRVPHEFMLAVQEDREWPLTARTTGEVVRTVRARDLWNEIVLAA 408

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
           +    P + F    N        G + +SN C+E        +   CNL S+NLLA +  
Sbjct: 409 WRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMFL----DDTACNLASLNLLAFYDE 464

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +FD +     +     +L+  + +      +  + ++ +R +GLG     S L ++ 
Sbjct: 465 EEGRFDVESFVHAVDIWTLILEISVVMAQFPSAEVARRSYLYRTLGLGFANLGSLLMVMG 524

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW------------DQG 719
           +PY S E   +A      ++  A   S  +A E G +  F+ +               + 
Sbjct: 525 LPYDSEEGRAVAGAIAAIMTGRAYHMSARMAAEWGPFPRFEANREHMLRVIRNHARAARH 584

Query: 720 VFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             P +  GL      L        +  T+R  WDE  +  +  G RN+   AIAPT TI 
Sbjct: 585 APPEEYEGLSVTPMGLDPDHTPGYLLETARRVWDEALEWGERHGFRNAQVSAIAPTGTIG 644

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +    +  I+P Y  +  K    G +  + +  V    +R  +    + ++  +    G
Sbjct: 645 LLMDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALRRLGYSAEQVEEIVRYCVGRG 704

Query: 833 NIERIP 838
            ++  P
Sbjct: 705 TLKGAP 710



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 17/129 (13%)

Query: 830 SIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           ++     + ++   +  TA          I     I   +  Q ++  A S  + + +  
Sbjct: 794 TLEGAPHLREEHLPVFDTATPSGRKGSRAISWRGHILMMAAVQPFVSGAISKTINMPQSA 853

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVDGKLNAVPVTDPN 932
           + + ++  Y  +W   LK     R  S        A S      + +      V    P 
Sbjct: 854 TVRDVEEAYLLSWRSMLKAVALYRDGSKLSQPLVGAGSARDRAAEVIAETERGVGTARPA 913

Query: 933 SSTHSLGIP 941
                 G+P
Sbjct: 914 GRVEDGGLP 922


>gi|332557931|ref|ZP_08412253.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
 gi|332275643|gb|EGJ20958.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
          Length = 1218

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/625 (19%), Positives = 215/625 (34%), Gaps = 118/625 (18%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E +      E  ++L+      ++P  FN+G                        
Sbjct: 125 GYFSTEADARAYYDEMRHMLARQMAAPNSPQWFNTGLHWAYGIDGPSQGHFYVDHATGKL 184

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 185 QKSDSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+F++ +      
Sbjct: 245 LS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQK 303

Query: 473 -----------RRRTHDMNTAN-----------------------------WIPDLFMKR 492
                        + +D+  A                               IP+ ++ R
Sbjct: 304 VASLVAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINR 363

Query: 493 VTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRG 532
           V Q A        +  +  D  S+ +     +               +  +       R 
Sbjct: 364 VLQYARQGFSSIEFPTYDTDWDSEAYTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRT 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + KV + I A  LW ++    +    P I F D  N        G +  SN C+E     
Sbjct: 424 DGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +   CNL S+NLL  F   +FD +      R     L+  + +     ++  + ++ 
Sbjct: 483 ---DDTACNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYD 539

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S ++
Sbjct: 540 FRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVAYATSAEMAGELGAFSGYE 599

Query: 713 ------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G         +  + L      +  +   ++  WDE  +  +
Sbjct: 600 RNAGHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGE 659

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    + 
Sbjct: 660 AHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALET 719

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             +  A IS +  +    G +   P
Sbjct: 720 LGYASAQISQIVAYAVGHGTLANCP 744



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + +    +  +    Y  +  +G+K    Y   S+ +  
Sbjct: 861 ESHIHMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +    P      L 
Sbjct: 921 LASALVEDDEEAEEILATGTPQEKAIVLA 949


>gi|77463055|ref|YP_352559.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387473|gb|ABA78658.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1218

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/625 (19%), Positives = 215/625 (34%), Gaps = 118/625 (18%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E +      E  ++L+      ++P  FN+G                        
Sbjct: 125 GYFSTEADARAYYDEMRHMLARQMAAPNSPQWFNTGLHWAYGIDGPSQGHFYVDHATGKL 184

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 185 QKSDSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+F++ +      
Sbjct: 245 LS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQK 303

Query: 473 -----------RRRTHDMNTAN-----------------------------WIPDLFMKR 492
                        + +D+  A                               IP+ ++ R
Sbjct: 304 VASLVAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINR 363

Query: 493 VTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRG 532
           V Q A        +  +  D  S+ +     +               +  +       R 
Sbjct: 364 VLQYARQGFSSIEFPTYDTDWDSEAYTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRT 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + KV + I A  LW ++    +    P I F D  N        G +  SN C+E     
Sbjct: 424 DGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +   CNL S+NLL  F   +FD +      R     L+  + +     ++  + ++ 
Sbjct: 483 ---DDTACNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYD 539

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  A + S E+A E GA+S ++
Sbjct: 540 FRTLGLGYANIGGLLMNMGLGYDSSEGRALCGALSAIMTGVAYATSAEMAGELGAFSGYE 599

Query: 713 ------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                             G         +  + L      +  +   ++  WDE  +  +
Sbjct: 600 RNAGHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGE 659

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    + 
Sbjct: 660 AHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALET 719

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             +  A IS +  +    G +   P
Sbjct: 720 LGYASAQISQIVAYAVGHGTLANCP 744



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + +    +  +    Y  +  +G+K    Y   S+ +  
Sbjct: 861 ESHIHMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +    P      L 
Sbjct: 921 LASALVEDDEEAEEILATGTPQEKAIVLA 949


>gi|86357383|ref|YP_469275.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86281485|gb|ABC90548.1| ribonucleotide-diphosphate reductase protein [Rhizobium etli CFN
           42]
          Length = 1271

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 211/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 TGDDRRRTHDMNTAN-----------------------------------------WIPD 487
                      +                                             +P+
Sbjct: 300 EEQKVAALVTGSKIVARHLKAIMKACVNCDGGDNGDCFDPAKNPALKREIRAAKKDQVPE 359

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN    +
Sbjct: 360 NYVQRVIQFARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWK 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 420 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 479

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 480 YMFL----DDTACNLASLNLLQFKDKATKRINIGDYEHAVRLWTVVLEVSVMMAQFPSKR 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 536 IAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAEL 595

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          I+ + L+     +  +   ++  WD
Sbjct: 596 GPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSINPVALIHSENPDQDLAAHAKSAWD 655

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 656 KALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 VPEALRTLGYSESQIAEIEAYAVGHGNLNQAPA 748



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+ +  
Sbjct: 864 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLKANALYRDGSKLSQP 923

Query: 911 VEKSTLKGVDGK 922
           +  S ++    +
Sbjct: 924 LNASLIEDESDE 935


>gi|254500218|ref|ZP_05112369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
 gi|222436289|gb|EEE42968.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
          Length = 1222

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 219/619 (35%), Gaps = 98/619 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L         PQ F      GL             +Y       F     T   +  
Sbjct: 141 RYMLATQKVAPNSPQWFN----TGLHWAYGIDGPSQGHYY-----VDFQTGKLTKSKTAY 191

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR  G  +    GK
Sbjct: 192 EHPQPHACFIQSVGDDLVNDGGIMDLWVREARLFKYGSGTGSNFSHVRAEGEKLS-GGGK 250

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD--------------- 464
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++               
Sbjct: 251 SSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEEYINWKVKEEQKVAALVTG 310

Query: 465 -----------------LRKNTGDDR--------RRTHDMNTANWIPDLFMKRVTQNA-- 497
                               + GD          +R         +P+ +++RV Q A  
Sbjct: 311 SKICQKHLTAIMRACVNCEADNGDCFDPAKNPALKREIRAAKKMMVPENYIQRVIQFAKQ 370

Query: 498 -----GWTLFSPDEVSDLH------------DLYGKEFEIAYENYERQAD-RGEIKVFRK 539
                 +  ++ D  S+ +             +         E+ E     R    V + 
Sbjct: 371 GFTKIEFPTYNTDWDSEAYLTVAGQNSNNSVRVTDGFLNAVVEDKEWDLTARKTDTVLKT 430

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW ++    + +  P + +    N        G + +SN C+E        +   
Sbjct: 431 VKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASNPCSEYMFL----DDTA 486

Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+NL+     +  F  D     +R    VL+  + +     ++  + ++  R +GL
Sbjct: 487 CNLASLNLMQFRNEDGSFAIDNYEHGVRLWTIVLEISVLMAQFPSKEIAELSYKFRTLGL 546

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------- 711
           G       L    IPY S E   I       ++  + + S E+A E G++  +       
Sbjct: 547 GYANIGGLLMTAGIPYDSDEGRAICGALTAVMTGVSYATSAEMAGELGSFPGYKKNAKHM 606

Query: 712 -----------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                       G          + + L      E  +   ++  WD   +  +  G RN
Sbjct: 607 LRVIRNHRLAAHGKAEGYEGLKTNPVPLDHASCPEPILVERAKKAWDRALELGEKNGFRN 666

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  ++  + E+
Sbjct: 667 AQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRKLGYSES 726

Query: 820 MISDLKYHDGSIGNIERIP 838
            I +++ +    G+I++ P
Sbjct: 727 EIGEIEAYAVGHGSIDQAP 745



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W + LK    Y   S+
Sbjct: 889 TVEDCKEAYMLSWKLALKANALYRDGSK 916


>gi|325293115|ref|YP_004278979.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325060968|gb|ADY64659.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 1272

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 213/572 (37%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSSYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL----- 463
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++     
Sbjct: 241 EGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVN 299

Query: 464 ---------------------------DLRKNTGDDR--------RRTHDMNTANWIPDL 488
                                      +   + GD          +R       + +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++KRV Q       +  +  +  D  S+ +                +F  A EN      
Sbjct: 360 YVKRVIQFAQQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGDWNL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGKVMKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NLL     A  + D       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLLQFKDQATKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY S E   IA      ++  + + S E+A E G
Sbjct: 536 AERSYEYRTLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELG 595

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  F                   G  +      ++ + L+     +  +   +   WD+
Sbjct: 596 PFPGFAPNRDNMLRVIRNHRRAAHGLSYGYEGLSVNPVALIHSDCTDQDLVAHATAAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PESLRSLGYSESQIAEIEAYAVGHGNLNQAPA 747



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      ++    N L+      + + +   +  G  ++     + ++   +   
Sbjct: 789 FLKGTLKVSDEQLSDMSFNLLEHLGFSKKDIEAANVHVCGAMTLEGAPFLKNEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCGAAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|254486479|ref|ZP_05099684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
 gi|214043348|gb|EEB83986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
          Length = 1217

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 203/573 (35%), Gaps = 91/573 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +
Sbjct: 171 YKTGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 231 RGAGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289

Query: 467 KNTGDD-----------RRRTHDMNTAN-----------------------------WIP 486
                             R  + +  A                               IP
Sbjct: 290 VIEEQKVASIVAGSKMHERELNKLFAAIKAWDGIQADAYDPAKNDQLKAAIKDAKKCAIP 349

Query: 487 DLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + ++KRV                +  W   +   VS  +         A+ +   +    
Sbjct: 350 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADW 409

Query: 533 EIK------VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           E+       V + I A  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 410 ELMDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFLEDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEIAGELG 585

Query: 707 AYSSFKGSL------------WDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           ++  +K +                G         +  + L      + A+   +   WDE
Sbjct: 586 SFPGYKKNADHMLRVIRNHRNAAYGKADGYENLSVKPVPLDHANCPQQALIEVATSTWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALRLGEQNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
               ++  +  A I ++  +    GSIGN   I
Sbjct: 706 PAALEKLGYGSAQIEEIVAYAVGHGSIGNAPGI 738



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + LK      + +   +D      ++     +  +   I   A            
Sbjct: 792 NDPTFDLLKSLGFSKKDVDAANDHVCGTMTLEGAPHLKPEHYNIFDCANPCGKKGKRYLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             ++    D    A  +   N    ++ +  
Sbjct: 912 PLASALVEDDDEAAETLESGNIHDKAVVLAE 942


>gi|84515607|ref|ZP_01002969.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510890|gb|EAQ07345.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
          Length = 1202

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 206/572 (36%), Gaps = 88/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +
Sbjct: 171 YQTGELTKSTSSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +
Sbjct: 231 RGEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWK 289

Query: 467 KNTGDD-----------RRRTHDMNTAN-----------------------------WIP 486
                             R  + +  A                               IP
Sbjct: 290 VIEEQKVASIVAGSKMHERYLNAIFAAIESWDGEEIAAYDPKTNETLAAAVKDAKRSAIP 349

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENYE-- 526
           + ++KRV   A        +  +  D  S+ +                 F  A EN E  
Sbjct: 350 ETYIKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTDAFLKAVENDEMW 409

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +R   +V + I A  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 410 KLINRKNGEVAKIIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL  + + QF  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFYKDGQFQVEDYMHATRLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGFGYDSAEGRAMGAALTAIMTGVSYATSAEMAGELG 585

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+  +                   G         +  + L      +  + + +   WDE
Sbjct: 586 AFPGYAKNEKHMLRVIRNHRNAAYGKTDGYEALDVKPVPLDHANCPDDRLVKLAVESWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALRLGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
               ++  +  A I ++  +    G++ + P 
Sbjct: 706 PAALEKLGYGSAQIEEIIAYAVGHGSMGQAPA 737



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +      +N    + L+      + +   +D      ++     + +D   +   A  
Sbjct: 782 KTLGIPEAKLNDPTFDLLRHLGYTKQDIEAANDHVCGTMTLEGAPFLREDHYSVFDCANP 841

Query: 851 IDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--T 899
                         I   +  Q +I  A S  + + ++ + +     Y  +W +G+K   
Sbjct: 842 CGKKGKRYLSVDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANA 901

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            Y   S+ +  +  + ++  D     +   + +     L 
Sbjct: 902 LYRDGSKLSQPLASALVEDDDDAREVLESGNHHEKAAVLA 941


>gi|146340435|ref|YP_001205483.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. ORS278]
 gi|146193241|emb|CAL77257.1| ribonucleotide reductase large subunit [Bradyrhizobium sp. ORS278]
          Length = 1256

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 119/573 (20%), Positives = 214/573 (37%), Gaps = 90/573 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +
Sbjct: 183 YKTGKLTKSKSSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRL 242

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +
Sbjct: 243 RGEGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWK 301

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 302 VKEEQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVP 361

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--E 526
           D ++KRV Q       +  + ++  D  S+ +                +F  A E     
Sbjct: 362 DNYIKRVIQFARQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDSDW 421

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   K+ + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 422 NLVGRTNKKIVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 481

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E        +   CNL S NLL  +     QFD        R    VL+  + +     +
Sbjct: 482 EYMFL----DDTACNLASANLLTFYDTRTKQFDVASYEHLCRLWTIVLEISVLMAQFPSK 537

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 538 AIAELSYEFRTLGLGYANIGGLLMTMGLSYDSKEGRALCGALSAIMTGIAYRTSAEMAGE 597

Query: 705 RGAYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+  +K +               +G         +  + L      ++++   +   W
Sbjct: 598 LGAFPGYKKNAAHMLRVIKNHRRAAKGEATGYEALSVAPVPLDHAHCPQVSLVSHAIQAW 657

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +T G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 658 DDALALGETNGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 717

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            V E  +   + E+ I++++ +    G++   P
Sbjct: 718 AVPEALRALGYRESEIAEIEAYAVGHGSLSNAP 750



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 29/231 (12%)

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSL-WDQGVFP--IDSIGLLAEVRDELAM 738
           I     E +       S E+A E  AY+   GSL    G+    + + G   E   ++  
Sbjct: 715 INRAVPEALRALGYRES-EIA-EIEAYAVGHGSLSNAPGINASTLKAKGFTDEAIAKVEK 772

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +      +  +  T+G              +A     S + +      + K  +   
Sbjct: 773 ALPTAFDIKFVFNKW-TLGEDFITRQLGVSAEALA-----SPTFELLAAIGFTKREIEAA 826

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              +                     LK    ++ +       + K + +         I 
Sbjct: 827 NVHIC----------GAMTVEGAPHLKAEHYAVFDCANPCGKIGKRYLSV-----ESHIR 871

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
             +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 872 MMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWKLALKANALYRDGSK 922


>gi|49477195|ref|YP_035576.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318722|ref|ZP_00391681.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|165870442|ref|ZP_02215097.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167634290|ref|ZP_02392611.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|167639300|ref|ZP_02397572.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|170686704|ref|ZP_02877924.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|170706204|ref|ZP_02896665.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|177651433|ref|ZP_02934222.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190568016|ref|ZP_03020926.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|196035391|ref|ZP_03102796.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218902560|ref|YP_002450394.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227815799|ref|YP_002815808.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228926483|ref|ZP_04089555.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932734|ref|ZP_04095606.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120992|ref|ZP_04250234.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229604865|ref|YP_002865866.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
 gi|254682484|ref|ZP_05146345.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726147|ref|ZP_05187929.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733900|ref|ZP_05191614.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740410|ref|ZP_05198101.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753801|ref|ZP_05205836.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758896|ref|ZP_05210923.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49328751|gb|AAT59397.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164713937|gb|EDR19459.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167512739|gb|EDR88113.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|167530178|gb|EDR92904.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|170128738|gb|EDS97604.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|170669227|gb|EDT19970.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|172082711|gb|EDT67774.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190560750|gb|EDV14725.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|195992068|gb|EDX56031.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218536400|gb|ACK88798.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227004906|gb|ACP14649.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228662652|gb|EEL18250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826939|gb|EEM72701.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833307|gb|EEM78872.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229269273|gb|ACQ50910.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
          Length = 440

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/470 (22%), Positives = 197/470 (41%), Gaps = 57/470 (12%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I   
Sbjct: 1   MTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEM 60

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SN
Sbjct: 61  YDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSN 120

Query: 584 LCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LCTEI     + E               CNLGS+N++    N +     +   +   +  
Sbjct: 121 LCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHAGMEA 175

Query: 632 LDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+         KK+N    ++GLG M     L    I Y S EA E A      +
Sbjct: 176 LTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +       
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPM 355

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +      W                            + ++++++   LI+  +  
Sbjct: 356 PYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|315425011|dbj|BAJ46685.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1044

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 136/747 (18%), Positives = 263/747 (35%), Gaps = 77/747 (10%)

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PN-YAKVTARFL 224
           + A  GL+         + +         S +          + + E P+ +++V    L
Sbjct: 11  KRASEGLKINRFYTDGRDVFSYFKWERRTSQIRDLAGNVIFEMKDVEVPSFWSQVATDIL 70

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
                           QK         Y E     +++  K  L  E  +   +  LA  
Sbjct: 71  ---------------AQKYFRKTGVPQYDENGHPILDKDGKPVLGPERSLKQVVRRLAGC 115

Query: 285 LKYERDFAFEYLG----LQILYDR--YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            +Y  +  F Y       Q   D   Y L         PQ F      GL          
Sbjct: 116 WRYWGE-RFNYFASQEDAQAFQDEIEYMLISQICAPNSPQWFN----TGLHWAYGITGPP 170

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAK 395
              +Y        + S           PQ  +CF+ ++ DDL    GI     + A + K
Sbjct: 171 QGHYYYDEELKQVVPS-----KDAYSRPQAHACFILSIKDDLVNPGGIMDTWVKQARIYK 225

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLET 454
           Y  G G +++ +R  G  +    G S GV+ FLKV +  A ++  G   R+ A    L  
Sbjct: 226 YGSGEGCNYSTLRAKGEPLS-GGGVSSGVMSFLKVGDAVAGSIKSGGTTRRAAKMVVLNI 284

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            H ++E+F+D +               + ++  + +     QN+  ++   +E       
Sbjct: 285 DHPEIEDFIDWKMKEEQKVAALVAAGYSPDFEGEAYQTVSGQNSNNSVRVTNEFMRA--- 341

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                 +          R + K  + + A  LW K+    +    P + F    N  +  
Sbjct: 342 ------VLENRDWALTRRTDGKPVKFVKARYLWEKIAKAAWACADPGLQFDTTINEWNTC 395

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRV 631
              G ++++N C+E     ++     CNL S+NL+  +   +  FD +     +R    V
Sbjct: 396 PETGRINATNPCSEFNFLDNT----ACNLASLNLVKFYDEEKGVFDVEAFRHAVRLWTIV 451

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+  + +  +   +  + ++  R++GLG       L  + +PY S E   +A      ++
Sbjct: 452 LEITVGMAQYPSPEIAEMSYKTRSLGLGYANLGGLLMRMGLPYDSDEGRAVAAVITALMT 511

Query: 692 FHAISASVELAQERGAYSSFKGSL--------------WDQGVFPIDSIGLLAEVRDELA 737
               + S E+A   G +  F+ +               +       + + +   +     
Sbjct: 512 GEVYATSAEIASIAGPFEEFEKNRVHVLRVLNNHRRAIYQAKPHEYEGLEIKPHLPPLEL 571

Query: 738 MNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVK 792
             +     +R  WD      +  G+RN+    IAPT TI  +    +  ++P +  + +K
Sbjct: 572 APKYLLDEARASWDRAVAMAEKYGVRNAQATLIAPTGTIGLLMDCDTLGVEPDFSLVKLK 631

Query: 793 SNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGS---IGNIERIPDDLKKIHATA 848
             + G +   VN  L   L++    ++ +   ++Y  G+    GN     + LKK   T 
Sbjct: 632 KLVGGGYFKLVNRSLEPALRKLGYSEKQIRDIIEYVIGTNTLHGNQPVNYNTLKKRGLTD 691

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNL 875
            E+  +  +  ++ R   +    +L +
Sbjct: 692 TELQKIEQLLVSATRLSDVINPHTLGV 718



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPD 839
           I+P    +     +     V  +   + LK     DE +    D+     ++     I  
Sbjct: 711 INPHTLGVEAMKRLGIPENVYKAPDFSLLKYLGFSDEEIRVSEDVICGSLTVEGAPHIKP 770

Query: 840 DLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           +   +   A          +     I   +  Q ++  A S  + + +E + + +  +Y 
Sbjct: 771 EHIPVFDCAVPAGRKGKRFVHYRAHILMMAAIQPFLSGAISKTVNMPNEATVEDVAEVYM 830

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            AW +GLK     R  S  S   +T K  + + 
Sbjct: 831 DAWRLGLKCIAIYRDGSKLSQPLTTAKKTEEQA 863


>gi|300022474|ref|YP_003755085.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524295|gb|ADJ22764.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1253

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 127/640 (19%), Positives = 225/640 (35%), Gaps = 99/640 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L +  +    PQ F      GL              Y       +         S  
Sbjct: 141 RYMLAMQMAAPNSPQWFN----TGLHWAYGIDGPGQGHMY-----VDYQTGELVHSTSAY 191

Query: 364 RHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL G           A L KY  G G++++ +RG    +    G+
Sbjct: 192 EHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGSNFSSLRGANEKLS-GGGR 250

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD------- 472
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++  +             
Sbjct: 251 SSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYITWKVREEQKVAALVTG 310

Query: 473 ----RRRTHDMNTAN-----------------------------WIPDLFMKRVTQ---- 495
               ++R   +  A                               +P  ++ RV Q    
Sbjct: 311 SKICQKRLKAVMKACVNCEAQDEACFDPLKNPKLKQAIREAKRDGVPQNYVLRVIQFARQ 370

Query: 496 ---NAGWTLFSPDEVSDLHDLYG-----------KEFEIAY--ENYERQADRGEIKVFRK 539
              +  +  +  D  S+ +                EF  A   +       R   KV + 
Sbjct: 371 GYKDIQFDTYDTDWDSEAYLTVAGQNSNNSVRVTDEFLNAVSADKDWNLISRLGNKVTKT 430

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW ++    + +  P I F    N        G + +SN C+E        +   
Sbjct: 431 IKARDLWEQIGFAAWASADPGIQFHTTINDWHTCPQSGQIRASNPCSEYMFL----DDTA 486

Query: 600 CNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNL S+NLL     +  FD +      R    VL+  + +      +  + ++ +R +GL
Sbjct: 487 CNLASLNLLRFRREDKSFDIESYEHGCRLWTIVLEISVLMAQFPSRRIAELSYRYRTLGL 546

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------ 712
           G       L    IPY S E   I       ++  + +AS E+A + GA+  ++      
Sbjct: 547 GFANIGGLLMSAGIPYDSDEGRAICGAISAIMTGVSYAASAEMAAKLGAFPGYEPNAADM 606

Query: 713 ------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                       G            + L      +  +   ++L WD   +  +  G RN
Sbjct: 607 LRVMRNHRRAAHGEAQGYEQLATAPVPLDHASLKDHRLGEAAKLAWDRALELGQNHGYRN 666

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +    +APT TI  +    +  I+P +  +  K    G +  + +  V E  +   + E+
Sbjct: 667 AQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPEALRTLGYRES 726

Query: 820 MISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
            I++++ +    G++ + P  +   + A  F  D +  IE
Sbjct: 727 EIAEVEAYAVGHGSLAQAPAINTATLKAKGFTDDALAKIE 766



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ +       Y  +W + LK    Y   S+
Sbjct: 862 ESHIRMMAASQPFISGAISKTINMPNDATVDDCKQSYMLSWKLALKANALYRDGSK 917


>gi|332672469|ref|YP_004421713.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
 gi|327493646|gb|AEA86505.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
          Length = 457

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 218/457 (47%), Gaps = 25/457 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +GT+  ++  ++   + + C   ++  +  +LS++   + D +   DL   ++ 
Sbjct: 15  INVIKRNGTVEKYSPDKMYKFLLKVCDN-KESYAINILSKSKIKLRDNIRIQDLYDEILS 73

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I    P Y K  A+  + K R+              +   +          +  G
Sbjct: 74  TTVNEISMLYPMYEKFAAKLYIIKYRK--------------NMGDEISLGNVLRLGLSSG 119

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFL-HINGSRIEMPQAFF 321
           + +     S  + ++  L   +   RD+ F+ Y  + + Y +Y L      ++E PQ  +
Sbjct: 120 IYSSDFVNSFSENEIQELNKYIDNNRDYLFQNYKAISMFYTKYCLNRTKTIKLETPQITY 179

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAM + + E  + ++    Y+L+S+  F  +TP + NSG    QLSSC L  + DD +
Sbjct: 180 MRVAMFICINENNRVEKIKRIYDLISTHKFTYATPIMLNSGINKGQLSSCVLAKMGDDSH 239

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I       A+ +K  GG   D + +R  G+ I G  G S G IPF+K+ + T  A NQG
Sbjct: 240 SILATNDNLAIYSKNKGGTACDISALRATGSIIDGV-GVSSGPIPFIKLLDSTISAWNQG 298

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             RKG+ C Y  TWH+DV+  + L+ N G +  R  ++  A  I D+F+KR   N  +TL
Sbjct: 299 STRKGSCCVYYPTWHMDVQNLIMLKDNGGTESTRARNLQYAIKIDDVFVKRWYNNENYTL 358

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +   L D +G +FE  Y  YE++++  +    + I+A  L+ ++L    ETG+ +I
Sbjct: 359 FDPKDTQKLLDSFGDDFEKYYLEYEQKSNIRK----KSINARELFDEILKYRVETGNIYI 414

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            F D  N +        V  SNLC EI L +S+    
Sbjct: 415 FFTDNVNKQGMLNR--TVTQSNLCCEIVLPTSAPYKK 449


>gi|316933806|ref|YP_004108788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
 gi|315601520|gb|ADU44055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
          Length = 1257

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 240/685 (35%), Gaps = 107/685 (15%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQA 319
            R   E         LA    Y   +   Y       +  +D  RY L +       PQ 
Sbjct: 98  ERFTSEHSAKQVFDRLAGCWTYW-GWKGSYFSSEDDARAFFDELRYMLAMQMVAPNSPQW 156

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F      GL             +Y       +     T   S   HPQ  +CF+  + DD
Sbjct: 157 FN----TGLHWAYGVDGPGQGHYY-----VDYKTGKLTKSKSAYEHPQPHACFIQGIEDD 207

Query: 380 LY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L    GI       A L KY  G G++++ +RG G  +    GKS G++ FLK+ +  A 
Sbjct: 208 LVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGKSSGLMSFLKIGDRAAG 266

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------------------------- 466
           A+  G   R+ A    ++  H D+E ++D +                             
Sbjct: 267 AIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAALVTGSKVNQKHLKAILKACV 326

Query: 467 --KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVS 508
             + +GDD          RR   +     + D  +KRV Q A        + ++  D  S
Sbjct: 327 NCQGSGDDCFDPEKNPALRREVKLARRALVQDAMIKRVIQFAKQGYKEIDFPIYDTDWDS 386

Query: 509 DLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + +                +F  A E         R   KV + + A  LW K+ T  + 
Sbjct: 387 EAYLTVAGQNSNNSVSLRDDFLRAVETDGDWHLTARTNKKVVKTLKARDLWEKIGTAAWA 446

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613
           +  P + F    N     +  G + +SN C+E        +   CNL S NLLA      
Sbjct: 447 SADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLAFYDVGA 502

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N+FD D      R    VL+  + +     ++  + ++  R +GLG       L  + + 
Sbjct: 503 NRFDLDAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGLS 562

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV- 720
           Y S E   +       ++  A + S E+A + GA+  +K +                G  
Sbjct: 563 YDSKEGRALCGALSAIMTGTAYATSAEMAAKLGAFPGYKKNADHMLRVIRNHRRAAHGET 622

Query: 721 -----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                  ++ + L             ++  WD+  +  +  G RN+    IAPT TI  +
Sbjct: 623 RVYEALSVNPVPLDHAGCPIPDAVAHAKAAWDKALELGEQHGYRNAQVTVIAPTGTIGLV 682

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    +   + E  I +++ +    G++
Sbjct: 683 MDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRVLGYPEHQIQEIEAYAVGHGSL 742

Query: 835 ERIPD-DLKKIHATAFEIDPMWLIE 858
              P  +   + A  F  + +  +E
Sbjct: 743 SNAPAINASTLKAKGFTDEALAKVE 767



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|241204320|ref|YP_002975416.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858210|gb|ACS55877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1271

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/573 (20%), Positives = 212/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 TGDDRRRT-------------------------------HDMNTAN----------WIPD 487
                                                   + N A            +P+
Sbjct: 300 EEQKVAALVTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPE 359

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN     
Sbjct: 360 NYVQRVIQFARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWN 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 420 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 479

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 480 YMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKR 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 536 IAELSYEYRTLGLGYANIGGLLMSTGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAEL 595

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          I+ + L+     +  +   ++  WD
Sbjct: 596 GPFPNFAPNRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHAKSAWD 655

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 656 KALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V +  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 VPDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 748



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 864 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLGLKANALYRDGSK 919


>gi|116251709|ref|YP_767547.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256357|emb|CAK07438.1| putative vitamin B12-dependent ribonucleotide reductase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1271

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/573 (20%), Positives = 212/573 (36%), Gaps = 91/573 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 TGDDRRRT-------------------------------HDMNTAN----------WIPD 487
                                                   + N A            +P+
Sbjct: 300 EEQKVAALVTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPE 359

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            +++RV Q       +  +  +  D  S+ +                +F  A EN     
Sbjct: 360 NYVQRVIQFARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWN 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + +V + + A  LW  +    + +  P I F    N        G +  SN C+E
Sbjct: 420 LTARKDGRVMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSE 479

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NLL     A  + +       +R    VL+  + +     ++
Sbjct: 480 YMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKR 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L    IPY S EA  IA      ++    + S E+A E 
Sbjct: 536 IAELSYEYRTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAEL 595

Query: 706 GAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +F  +                          I+ + L+     +  +   ++  WD
Sbjct: 596 GPFPNFAPNRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHAKSAWD 655

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +  +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 656 KALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRA 715

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           V +  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 VPDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 748



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 864 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLGLKANALYRDGSK 919


>gi|315426696|dbj|BAJ48321.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1028

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 127/711 (17%), Positives = 247/711 (34%), Gaps = 74/711 (10%)

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKE-PN-YAKVTARFLLEKLRREVLTTVYKKPQ 241
           + +         S +          + + E P+ +++V    L                Q
Sbjct: 12  DVFSYFKWERRTSQIRDLAGNVIFEMKDVEVPSFWSQVATDIL---------------AQ 56

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG---- 297
           K         Y E     +++  K  L  E  +   +  LA   +Y  +  F Y      
Sbjct: 57  KYFRKTGVPQYDENGHPILDKDGKPVLGPERSLKQVVRRLAGCWRYWGE-RFNYFASQED 115

Query: 298 LQILYDR--YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            Q   D   Y L         PQ F      GL             +Y        + S 
Sbjct: 116 AQAFQDEIEYMLISQICAPNSPQWFN----TGLHWAYGITGPPQGHYYYDEELKQVVPS- 170

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
                     PQ  +CF+ ++ DDL    GI     + A + KY  G G +++ +R  G 
Sbjct: 171 ----KDAYSRPQAHACFILSIKDDLVNPGGIMDTWVKQARIYKYGSGEGCNYSTLRAKGE 226

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G S GV+ FLKV +  A ++  G   R+ A    L   H ++E+F+D +     
Sbjct: 227 PLS-GGGVSSGVMSFLKVGDAVAGSIKSGGTTRRAAKMVVLNIDHPEIEDFIDWKMKEEQ 285

Query: 472 DRRRTHDMNTA-NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                     + ++  + +     QN+  ++   +E             +  +       
Sbjct: 286 KVAALVAAGYSPDFEGEAYQTVSGQNSNNSVRVTNEFMRA---------VLEDRDWALTR 336

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R + K  + + A  LW K+    +    P + F    N  +     G ++++N C+E   
Sbjct: 337 RTDGKPVKFVKARYLWEKIAKAAWACADPGLQFDTTINEWNTCPETGRINATNPCSEFNF 396

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
             ++     CNL S+NL+  +   +  FD +     +R    VL+  + +  +   +  +
Sbjct: 397 LDNT----ACNLASLNLVKFYDEEKGVFDVEAFRHAVRLWTIVLEITVGMAQYPSPEIAE 452

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R++GLG       L  + +PY S E   +A      ++    + S E+A   G +
Sbjct: 453 MSYKTRSLGLGYANLGGLLMRMGLPYDSDEGRAVAAVITALMTGEVYATSAEIASIAGPF 512

Query: 709 SSFKGSL--------------WDQGVFPIDSIGLLAEVRDELAMNRT----SRLPWDELK 750
             F+ +               +       + + +   +       +     +R  WD   
Sbjct: 513 EEFEKNRVHVLRVLNNHRRAIYQAKPHEYEGLEIKPHLPPLELAPKYLLDEARASWDRAV 572

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVN 808
              +  G+RN+    IAPT TI  +    +  ++P +  + +K  + G +   VN  L  
Sbjct: 573 AMAEKYGVRNAQATLIAPTGTIGLLMDCDTLGVEPDFSLVKLKKLVGGGYFKLVNRSLEP 632

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            L++    ++ +   ++Y  G+       P +   +         +  IE 
Sbjct: 633 ALRKLGYSEKQIRDVIEYVIGTNTLHGNQPVNYNALKKRGLTDTELQKIEQ 683



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPD 839
           I+P    +     +     V  +   + LK     DE +    D+     ++     I  
Sbjct: 695 INPHTLGVEAMKRLGIPENVYKAPDFSLLKYLGFSDEEIRVSEDVICGSLTVEGAPHIKP 754

Query: 840 DLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
           +   +   A          +     I   +  Q ++  A S  + + +E + + +  +Y 
Sbjct: 755 EHIPVFDCAVPAGRKGKRFVHYRAHILMMAAIQPFLSGAISKTVNMPNEATVEDVAQVYM 814

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            AW +GLK     R  S  S   +T K  + + 
Sbjct: 815 DAWRLGLKCIAIYRDGSKLSQPLTTAKKTEEQA 847


>gi|49184286|ref|YP_027538.1| ribonucleoside-diphosphate reductase subunit alpha, group I
           intron-containing [Bacillus anthracis str. Sterne]
 gi|49178213|gb|AAT53589.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Sterne]
          Length = 440

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/470 (22%), Positives = 197/470 (41%), Gaps = 57/470 (12%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I   
Sbjct: 1   MTKKINVDEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEM 60

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SN
Sbjct: 61  YDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSN 120

Query: 584 LCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LCTEI     + E               CNLGS+N++    N +     +   +   +  
Sbjct: 121 LCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHAGMEA 175

Query: 632 LDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+         KK+N    ++GLG M     L    I Y S EA E A      +
Sbjct: 176 LTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +       
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPM 355

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +      W                            + ++++++   LI+  +  
Sbjct: 356 PYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|126461930|ref|YP_001043044.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103594|gb|ABN76272.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 1218

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 121/625 (19%), Positives = 215/625 (34%), Gaps = 118/625 (18%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E +      E  ++L+      ++P  FN+G                        
Sbjct: 125 GYFSTEADARAYYDEMRHMLARQMAAPNSPQWFNTGLHWAYGIDGPSQGHFYVDHATGKL 184

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +RG G  
Sbjct: 185 QKSDSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+F++ +      
Sbjct: 245 LS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQK 303

Query: 473 -----------RRRTHDMNTAN-----------------------------WIPDLFMKR 492
                        + +D+  A                               IP+ ++ R
Sbjct: 304 VASLVAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINR 363

Query: 493 VTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYERQADRG 532
           V Q A        +  +  D  S+ +     +               +  +       R 
Sbjct: 364 VLQYARQGFSSIEFPTYDTDWDSEAYTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRT 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + KV + I A  LW ++    +    P I F D  N        G +  SN C+E     
Sbjct: 424 DGKVAKTIKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +   CNL S+NLL  F   +FD +      R     L+  + +     ++  + ++ 
Sbjct: 483 ---DDTACNLASMNLLTFFEAGRFDAEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYD 539

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  + + S E+A E GA+S ++
Sbjct: 540 FRTLGLGYANIGGLLMNMGLGYDSCEGRALCGALSAIMTGVSYATSAEMAGELGAFSGYE 599

Query: 713 GSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +                          +  + L      +  +   ++  WDE  +  +
Sbjct: 600 RNAAHMLRVIRNHRTAAHGHTTGYEGVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGE 659

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V    + 
Sbjct: 660 AHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALET 719

Query: 814 DLWDEAMISDLKYHDGSIGNIERIP 838
             +  A IS +  +    G +   P
Sbjct: 720 LGYASAQISQIVAYAVGHGTLANCP 744



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + +    +  +    Y  +  +G+K    Y   S+ +  
Sbjct: 861 ESHIHMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQP 920

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +    P      L 
Sbjct: 921 LASALVEDDEEAEEILATGTPQEKAIVLA 949


>gi|221633788|ref|YP_002523014.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
 gi|221156890|gb|ACM06017.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
          Length = 1122

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 207/565 (36%), Gaps = 60/565 (10%)

Query: 308 HINGSRI------EMPQAFFMRVA-MGLALKETEKEKRAVEF--YNLLS-------SFHF 351
              G R       E  QAF   +A M L         +      Y            ++ 
Sbjct: 115 RDWGERYGYFATAEDAQAFEDELAYMLLHQIGAPNSPQWFNTGLYWAYRIAGPPQGHWYV 174

Query: 352 MCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTP 406
              T  L  S     HP   +CF+ +V DDL    GIF  +   A + KY  G G +++ 
Sbjct: 175 DPETGELRQSPDAYSHPSAHACFIQSVEDDLVNPGGIFDLVLREARVFKYGAGSGTNFSK 234

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL 465
           +R  G  +    G S G++ FLKV +  A A+  G   R+ A    ++  H D+E+F+  
Sbjct: 235 IRAEGEPLS-GGGTSSGLMSFLKVFDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEKFIRW 293

Query: 466 RKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +               +  +  + +     QN+  ++  PDE             +  + 
Sbjct: 294 KAEEEKKVAALVAAGYSADFNGEAYATVSGQNSNNSVRVPDEFIRA---------VLEDR 344

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 R + ++ + + A  LW+ +    ++   P I +    N        G +++SN 
Sbjct: 345 DWHLRWRTDGRIAKTVRARELWQMIAEAAWQCADPGIQYDTTINDWHTCPASGRINASNP 404

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E        +   CNL S+NLL  +   + +FD       +R    VL+  + +  + 
Sbjct: 405 CSEYMFL----DDTACNLASLNLLKFYDAKSGRFDIAAFRHAVRLWTIVLEITVLMAQYP 460

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +   +++  R +GLG     S L  + +PY S  A  +A      ++  A + S E+A
Sbjct: 461 SREIAWNSYRFRTLGLGYANLGSLLMTMGLPYDSDRARAVAAAITAIMTGEAYATSAEMA 520

Query: 703 QERGAYSSFKGSLWD-------------------QGVFPIDSIGLLAEVRDELAMNRTSR 743
              G + +F  +                           I   GL A       +   +R
Sbjct: 521 AILGPFPAFPENREHMLRVIRNHRRAAYDAHPEEYEGLHIAPQGLDATHCPP-ELVAAAR 579

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             WD   +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  +
Sbjct: 580 EAWDRALELGERFGYRNAQATLLAPTGTIGLLMDCDTTGIEPDFALVKFKKLAGGGYFKI 639

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH 827
            +  V    +R  +    I D+  +
Sbjct: 640 VNRSVAPALERLGYTPEQIQDILTY 664



 Score = 74.4 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 11/153 (7%)

Query: 807 VNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFE--------IDPMWL 856
            + L       E +   +D+     ++     +  +   +   A +        I  M  
Sbjct: 734 FDLLAALGFTAEEIEEANDVICGRQTVEGAPHLAPEHLPVFDCANKCGKHGTRFIHYMGH 793

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           I   +  Q ++  A S  + +  E + + +   Y + W +GLK     R  S  S   ST
Sbjct: 794 IRMMAAVQPFLSGAISKTINMPHEVTVEDVANAYFEGWRLGLKALAIYRDGSKLSQPLST 853

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                 K          +      +        
Sbjct: 854 RSSEKEKSERASTATREAPPPERQVEVMVVERP 886


>gi|150396451|ref|YP_001326918.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           medicae WSM419]
 gi|150027966|gb|ABR60083.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium medicae WSM419]
          Length = 1263

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 213/572 (37%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR 
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYVRA 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL----- 463
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++     
Sbjct: 241 EGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 464 -------------------------DLRKNTGDDR----------RRTHDMNTANWIPDL 488
                                     +  +  DD           +R       + +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACINCDGSDDACFDPKQNPALKREIRAAKQSLVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++KRV Q       +  +  +  D  S+ +                +F  A E       
Sbjct: 360 YVKRVIQFARQGYKDIEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVEADGDWHL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGRVMKTLKARDLWESISHAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+     AN + +       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLMQFKDAANKRINIGDYEHAVRLWTVVLEVSVMMAQFPSREI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY SPE   IA      ++  A + S E++ + G
Sbjct: 536 AELSYAYRTLGLGYANIGGLLMSSGIPYDSPEGRAIAGALTAIMTGVAYATSAEISAKLG 595

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  F                   G         ++ + L+     +  +   ++  WD+
Sbjct: 596 PFPGFAPNRDNMLRVMRNHRRAAYGETAGYEGLSVNPVALVHGDCPDQDLIAHAKSAWDQ 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 AVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PEALRTLGYSESQIAEMEAYAVGHGNLNQAPA 747



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      + S   N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKGTLQVSDEQLASVDFNLLEHLGFSRKDIETANIHVCGAMTLEGAPFLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|14590272|ref|NP_142338.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus
            horikoshii OT3]
 gi|3256754|dbj|BAA29437.1| 1291aa long hypothetical ribonucleoside-diphosphate reductase
            [Pyrococcus horikoshii OT3]
          Length = 1291

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 171/349 (48%), Gaps = 20/349 (5%)

Query: 579  VHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
            +HS      I+ N   E   E   CNL SINL      ++     FD+D+ A  I+   +
Sbjct: 840  IHSYISNGFISHNCGEEPLYEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVTK 899

Query: 631  VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
             LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   +  E++
Sbjct: 900  YLDNAIDVNKFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYL 959

Query: 691  SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            +F+A   SVE A+ RG +  ++ + + +G  P++                   LPWD+L 
Sbjct: 960  TFYAYKYSVEAAKRRGTFPLYEKTEYPKGKLPVEG----------FYHPEIWNLPWDKLV 1009

Query: 751  KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F  V+     EL
Sbjct: 1010 EEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPIYALVYKKSVTVGEFYYVDPVFEAEL 1069

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            K+R L+ E ++  +  + GSI  +E IP+D+K++  TA +I  +  + + +  Q W+  +
Sbjct: 1070 KKRGLYSEELLKKISDNYGSIQGLEEIPEDMKRVFVTALDIHWLDHLLAQASIQMWLTDS 1129

Query: 871  QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             S  + + +E + + +   Y  A  +G K     R  S  SV+  +++G
Sbjct: 1130 ASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSL-SVQVYSVEG 1177



 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/564 (20%), Positives = 221/564 (39%), Gaps = 115/564 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V        +R +  +  + +  V R+      
Sbjct: 12  KVMKRDGRIVPFDESRIRWAVQRAMWEVG-------VRDEKKLDEVVKAIVQRI-NELYD 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +                 
Sbjct: 64  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEK----------------- 106

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                        + I+ +    L ++  +  ++         L   +    +I S R L
Sbjct: 107 -------------KRILNK--KELDEIDKRFSINALRVLASRYLKRDE-NGNIIESPREL 150

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E+    A +                                  +    Y ++  +    
Sbjct: 151 FERVAILAVIPDLLY------------------------DERVFDKDGNYSQDLKRVEYY 186

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM--G 327
            E   +FD  Y               +G   L   +F  +     E+ +   M+V++   
Sbjct: 187 LEHFEEFDGKYS--------------IGKYKLNKYHFERMVNLYKELAEKGKMKVSIDEF 232

Query: 328 LALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           L + E     + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 233 LGMLERGEFNKYEKEIDEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 292

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + A++ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 293 MKAAHDVALIQKAGGGTGINFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 352

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    LE WH D+E+F+  ++          + N +  I + F++ + +   + L +
Sbjct: 353 RRGANMGILEIWHPDIEKFIHAKEKNIG-TNVLSNFNISVGIWEDFLEALKEGKKYPLIN 411

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P                               V R++   +L+ ++  M +    P + F
Sbjct: 412 PRTGE---------------------------VVREVDPKSLFEELAYMAWAKADPGVIF 444

Query: 564 KDPCNIRSPQQHV--GVVHSSNLC 585
            D  N R+  +    G + ++N C
Sbjct: 445 FDIINRRNVLKEAKGGPIRATNPC 468


>gi|312890959|ref|ZP_07750486.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
 gi|311296556|gb|EFQ73698.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
          Length = 1104

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 219/576 (38%), Gaps = 57/576 (9%)

Query: 288 ERDFAFEYLG----LQILYDR--YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           +    + Y        I YD   Y L    +    PQ F      GL        K    
Sbjct: 106 DWGMRYGYFATPKDADIFYDELVYTLVGQLAAPNSPQWFN----TGLYSSYGISGKPQGH 161

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSG 398
           +Y        + +      S    PQ  +CF+ +V DDL    GI       A + KY  
Sbjct: 162 YY-----VDPVTAKLEKSTSAYERPQPHACFILSVDDDLVNEGGIMDLWVREARIFKYGS 216

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHI 457
           G+G +++ +RG  +      G S G++ FLK+ +  A A+  G   R+ A    L+  H 
Sbjct: 217 GVGTNFSKIRGE-SEKLSGGGYSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHP 275

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           ++E F++ +               ++ +  + +     QN+  ++  P+   +     GK
Sbjct: 276 EIESFVNWKVEEEKKVAALIAAGYSSDYEGEAYRTVSGQNSNNSVRIPNSFFNALKE-GK 334

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           ++++          R   +V + +SA  LW  +    +    P + +    N        
Sbjct: 335 QWDLT--------GRMNGRVIKSVSAQKLWDDIAFAAWACADPGVQYDTTINEWHTCPEG 386

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDN 634
           G +++SN C+E     ++     CNL SINL  +F  +   FD      T R    VL+ 
Sbjct: 387 GRINASNPCSEYMFLDNT----ACNLASINLAHYFDADTRVFDVKGFEHTCRIWTIVLEI 442

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +     +   + ++ +R +GLG     SAL +  IPY S +A  I       ++  A
Sbjct: 443 SVLMAQFPSKDVAQLSYDYRTLGLGYANLGSALMVNGIPYDSDKARAIGGAITAIMTGTA 502

Query: 695 ISASVELAQERGAYSSFKG------------------SLWDQGVFPIDSIGLLAEVRDEL 736
            + S E+A+E G +S +                    S  +     I   G+  +   + 
Sbjct: 503 YATSAEMAREMGTFSKYAENKEHMLRVMRNHRYAAYNSTENYEGLEIAPPGIDQKYCPDY 562

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM 795
            ++      WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +  K   
Sbjct: 563 LLSAACNA-WDKAVEMGEQYGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLS 621

Query: 796 SGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            G +   +N  +   LK     +  + + + Y  G+
Sbjct: 622 GGGYFKIINQAVPAALKNLGYKEHEVTAIINYAKGT 657



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAFE-------- 850
             N+   N L+      + +    +Y  G  ++     +  +   I   A +        
Sbjct: 717 QYNAPDFNLLRALGYSKKQIAEANEYICGNMTVEGAPYLKTEHYPIFDCANKCGAKGERY 776

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I     I+  +  Q ++  A S  +    E    ++   Y+ +W +GLK     R     
Sbjct: 777 IHAHGHIKMMASAQPFLSGAISKTINLPHEAKVDEIKDCYQLSWQLGLKANALYRDGCKL 836

Query: 910 SVEKST----LKGVDGKLNAVPVTDPNSSTHSLG 939
           S   ST     +  D KL+ V      ++   L 
Sbjct: 837 SQPLSTKSDQKEEADDKLDTVEEVLGQAANVKLS 870


>gi|315187551|gb|EFU21307.1| ribonucleoside-diphosphate reductase class II [Spirochaeta
           thermophila DSM 6578]
          Length = 1120

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 131/667 (19%), Positives = 232/667 (34%), Gaps = 130/667 (19%)

Query: 296 LGLQILYDRYFLH-------INGSRIEMPQAFFMRVA---------MGLALKETEKEKRA 339
           +   IL  +YF             R    +  F R+A          G    E + +   
Sbjct: 50  IATDILAQKYFRRRGVPVEISPDGREYDARQVFHRLAYTWMWWGKEAGYFDSEEDAQAFY 109

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG------------------------------TRHPQLS 369
            E   +L+      ++P  FN+G                                 PQ  
Sbjct: 110 DEVCYMLAHQMAAPNSPQWFNTGLHAVYGIEGPPQGHYYVDHRTGELEKSANAYSRPQPH 169

Query: 370 SCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +CF+  V DDL G   I  AL   A + KY  G G++++ +R  G  +    G S G++ 
Sbjct: 170 ACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPLS-GGGMSSGLMS 228

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF----------------------- 462
           FLKV + +A A+  G   R+ A    L+  H D+  F                       
Sbjct: 229 FLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILTFVRWKVEEEYKVASLVAGSRLVAR 288

Query: 463 -----LDLRKNTGD----DRRRTHDMNTANWIPDLFMKRVTQNAG-------WTLFSPDE 506
                L   ++ GD      R          +P+ F+ +V + A        + +++ D 
Sbjct: 289 HAREILSAYRSEGDVAAGGVRDAVGRALEAGVPEQFVHQVLRLAEEGMGPEEFPVYTTDW 348

Query: 507 VSDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTML 553
             + +                EF +A +         R   +V R + A  LW +++   
Sbjct: 349 EGEAYATVSGQSSNNSVRVSHEFMLAVQEDGEWPLTARTTGEVVRTVRARDLWNEIVLAA 408

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-- 611
           +    P + F    N        G + +SN C+E        +   CNL S+NLLA +  
Sbjct: 409 WRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMFL----DDTACNLASLNLLAFYDE 464

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +FD D     +     +L+  + +      +  + ++ +R +GLG     S L ++ 
Sbjct: 465 EEGRFDVDSFVHAVDIWTLILEISVVMAQFPSAEVARRSYLYRTLGLGFANLGSLLMVMG 524

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-------------- 717
           +PY S E   +A      ++  A   S  +A E G +  F+ +                 
Sbjct: 525 LPYDSDEGRAVAGAITAIMTGRAYHMSARMAAEWGPFPRFEANREHMLRVVRNHARAARQ 584

Query: 718 -----QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                     +  +GL      +  +   +R  WDE  +  +  G RN+   AIAPT TI
Sbjct: 585 APPEEYEGLSVTPMGLDPGHTPDYLL-EAARRVWDEALEWGERHGFRNAQVSAIAPTGTI 643

Query: 773 ANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
             +    +  I+P Y  +  K    G +  + +  V    +R  +    + ++  +    
Sbjct: 644 GLLMDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALRRLGYSAEQVEEIVRYCVGR 703

Query: 832 GNIERIP 838
           G ++  P
Sbjct: 704 GTLKGAP 710



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 807 VNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEIDPMWL 856
            + L      +E + +  ++  G  ++     + ++   +  TA          I     
Sbjct: 769 FDLLGFLGFSEEEVGAAEEWACGAMTLEGAPYLREEHLPVFDTATPSGRKGSRAISWRGH 828

Query: 857 IESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS-------- 907
           I   +  Q ++  A S  + + +  + + ++  Y  +W   LK     R  S        
Sbjct: 829 ILMMAAVQPFVSGAISKTINMPQSATVRDVEEAYFLSWRSMLKAVALYRDGSKLSQPLVG 888

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           A S      + +     AV    P       G+P
Sbjct: 889 AGSARDRVAEVIAEAERAVGTARPAGRVEDGGLP 922


>gi|146276981|ref|YP_001167140.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555222|gb|ABP69835.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 1239

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 205/576 (35%), Gaps = 89/576 (15%)

Query: 348 SFHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+   +T      +S   HPQ  +CF+ +V DDL    GI       A L KY  G G 
Sbjct: 197 HFYVDHATGKLVKSDSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGT 256

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG G  +    GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+
Sbjct: 257 NFSSLRGEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQ 315

Query: 462 FLDLRKNTGDD-----------RRRTHDMNTAN--------------------------- 483
           F++ +                   + +D+  A                            
Sbjct: 316 FINWKVIEEQKVASLVAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAK 375

Query: 484 --WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              IP+ ++ RV Q              +  W   +   VS  +         A+    +
Sbjct: 376 KAMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEAYITVSGQNSNNSVRVTDAFLRAVK 435

Query: 528 QA------DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           +        R + KV + + A  LW ++    +    P I F D  N        G +  
Sbjct: 436 EDADWALLRRTDGKVAKTVKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRG 495

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SN C+E        +   CNL S+NLL  F   +FD D      R     L+  + +   
Sbjct: 496 SNPCSEYMFL----DDTACNLASMNLLTFFEGGRFDADAYIHATRLWTLTLEVSVMMAQF 551

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             ++  + +   R +GLG       L  + + Y S E   +       ++  A + S E+
Sbjct: 552 PSKEIAQLSFDFRTLGLGYANIGGLLMNMGLGYDSKEGRALCGALSAIMTGVAYATSAEM 611

Query: 702 AQERGAYSSFKGS-----------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           A E GA++ ++ +                         +  + L A    +  +   ++ 
Sbjct: 612 AAELGAFAGYQRNAQHMLRVIRNHRAAAHGATSYEAVNVAPVPLDAANCPDARLVSLAKS 671

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
            WDE     +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + 
Sbjct: 672 AWDEALALGEAHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 731

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +  V    +   +  A IS +  +    G +   P 
Sbjct: 732 NQSVPAALETLGYSSAQISQIVAYAVGHGTLANCPA 767



 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + +    +  ++   Y  +  +G+K    Y   S+ +  
Sbjct: 883 ESHIHMMAAAQSFISGAISKTINMPNSATIAEVLAAYELSHSLGIKANALYRDGSKLSQP 942

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSST 935
           +  + ++  +     +    P    
Sbjct: 943 LASALVEDDEEAEEILATGTPQEKA 967


>gi|163759498|ref|ZP_02166583.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283095|gb|EDQ33381.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 1263

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 132/706 (18%), Positives = 241/706 (34%), Gaps = 164/706 (23%)

Query: 292 AFEYLGLQILYDRYFLH------------------------INGSRIEMPQA-------- 319
            F  +   IL  +YF                             +  E+P+         
Sbjct: 46  QFSQVAADILAQKYFRKAGVPARLKKVEENSVPSWLWRSVADEKALAELPEDERYGSETD 105

Query: 320 ---FFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG----- 362
               F R+A          G    E +      E   +L++     ++P  FN+G     
Sbjct: 106 ARQVFDRLAGTWTYWGWKGGYFTSEEDARAFMDEQAYMLATQRVAPNSPQWFNTGLHWAY 165

Query: 363 -------------------------TRHPQLSSCFLTTVPDDL---YGIFGALQENAMLA 394
                                      HPQ  +CF+ +V DDL    GI       A L 
Sbjct: 166 GIDGPGQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQSVEDDLVNDNGIMDLWVREARLF 225

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           KY  G G++++ +RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++
Sbjct: 226 KYGSGTGSNFSHLRGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVD 284

Query: 454 TWHIDVEEFLDLRKNTGDDR---------------------------------------- 473
             H D+E++++ +                                               
Sbjct: 285 IDHPDIEDYINWKVKEEQKVAALVTGSKIVAAHLTAIMKACLNCEADNDACFDPNQNPAL 344

Query: 474 RRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG----------- 515
           +R       N +P+ ++KRV Q       +  +  +  D  S+ +               
Sbjct: 345 KREIKAAKKNQVPENYVKRVIQFARQGYTDIEFKTYDTDWDSEAYLTVSGQNSNNSVSIK 404

Query: 516 KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            +F  A E         R + KV + + A  LW ++    + +  P + F    N     
Sbjct: 405 DDFLRAVETDGDWNLTARKDGKVMKTLKARDLWEQIGHAAWASADPGLHFNTTMNDWHTC 464

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRV 631
              G + +SN C+E        +   CNL S+NLL        + +       +R    V
Sbjct: 465 PAAGPIRASNPCSEYMFL----DDTACNLASLNLLRFKDADTKRINIADYEHAVRLWTLV 520

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+  + +      +  + ++ +R +GLG       L    IPY S E   I       ++
Sbjct: 521 LEVSVMMAQFPSRQIAELSYKYRTLGLGYANIGGLLMTTGIPYDSKEGRAICGALTAIMT 580

Query: 692 FHAISASVELAQERGAYSSFKGSL------------WDQGV------FPIDSIGLLAEVR 733
             + + S E+A E GA+  +K +                G         ++ + L+ +  
Sbjct: 581 GVSYATSAEIAGELGAFPGYKDNKTNMLRVIRNHRLAAHGEDSGYEGLSVNPVALIHDEC 640

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVK 792
            +  + + +   WD+  +     G RN+    IAPT TI  +    +  I+P +  +  K
Sbjct: 641 PDQDLIKHATAAWDKALELGTKNGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFK 700

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
               G +  + +  V E  +   + EA +++++ +    GNI + P
Sbjct: 701 KLAGGGYFKIINNAVPEALRTLGYSEAQLAEIEAYAVGHGNINQAP 746



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + KS +      ++ F  + L       + + +   +  G  ++     +  +   +   
Sbjct: 789 FCKSVLGLTDEQMDDFAFDLLAAIGFSRKDIEAANIHVCGAMTLEGAPHLKTEHYPVFDC 848

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A     +          I   +  Q +I  A S  + + +E +       Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNEATVDDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|115524508|ref|YP_781419.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisA53]
 gi|115518455|gb|ABJ06439.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisA53]
          Length = 1255

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 120/593 (20%), Positives = 220/593 (37%), Gaps = 91/593 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+  + DDL    GI       A L KY  G G++++ +RG
Sbjct: 185 TGKLTKSKSAYEHPQPHACFIQGIQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRG 244

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR-- 466
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +  
Sbjct: 245 EGERLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVK 303

Query: 467 -----------------------------KNTGDD---------RRRTHDMNTANWIPDL 488
                                        + +GDD          RR   +     + D 
Sbjct: 304 EEQKVAALVTGSKINQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRALVTDN 363

Query: 489 FMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYERQ 528
            +KRV Q A        + ++  D  S+ +                +F  A E       
Sbjct: 364 MIKRVIQYAKQGYKEIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNL 423

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R   KV + I A  LW K+ T  + +  P + F    N     +  G + +SN C+E 
Sbjct: 424 TARTSKKVMKTIKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEY 483

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S NLL  +     +FD D      R    VL+  + +     ++ 
Sbjct: 484 MFL----DDTACNLASANLLTFYDIEAKRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQI 539

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  + + Y S E   +       ++  + + S E+AQ+ G
Sbjct: 540 AELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGGLTAIMTGVSYATSAEMAQKLG 599

Query: 707 AYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +K +                G         +  + L      +  +   ++  WD 
Sbjct: 600 PFPGYKKNASHMLRVIRNHRRAAHGESRGYEALAVAPVPLDHASCPQPEIITHAKAAWDR 659

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 660 ALELGELHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAV 719

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIES 859
               +   + E+ I++++ +    G++   P  +   + A  F  + +  +E+
Sbjct: 720 PAALRVMGYPESQIAEIEAYAVGHGSLSNAPAINHSTLKAKGFTDEALKKVEA 772



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             LK    ++ +       + K + +         I   +  Q +I  A S  + + ++ 
Sbjct: 840 PHLKAEHYAVFDCANPCGKIGKRYLSV-----ESHIRMMAAAQPFISGAISKTINMPNDA 894

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W + LK    Y   S+
Sbjct: 895 TVEDCKSAYLLSWKLALKANALYRDGSK 922


>gi|15889037|ref|NP_354718.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|81591416|sp|Q8UEM4|NRDJ_AGRT5 RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|15156830|gb|AAK87503.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 1272

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 212/572 (37%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL----- 463
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++     
Sbjct: 241 EGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVN 299

Query: 464 ---------------------------DLRKNTGDDR--------RRTHDMNTANWIPDL 488
                                      +   + GD          +R       + +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPEN 359

Query: 489 FMKRVTQNAG-------WTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++KRV Q A        +  +  D  S+ +                +F  A EN      
Sbjct: 360 YVKRVIQFAEQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGNWNL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + KV + + A  LW K+    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGKVMKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NLL        + D       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLLQFKDAKTKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY S E   IA      ++  + + S E+A E G
Sbjct: 536 AERSYEYRTLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELG 595

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + SF                   G         ++ + L+     +  +   +   WD+
Sbjct: 596 PFPSFAPNRDNMLRVIRNHRRAAHGQSEGYEGLSVNPVALIHADCTDQDLVAHATAAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PESLRSLGYSESQIAEIEAYAVGHGNLNQAPA 747



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCGAAYMLSWKLALKANALYRDGSK 918


>gi|86749663|ref|YP_486159.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris HaA2]
 gi|86572691|gb|ABD07248.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris HaA2]
          Length = 1257

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 135/686 (19%), Positives = 238/686 (34%), Gaps = 107/686 (15%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQA 319
            R   E         LA    Y   +  +Y       +  YD  RY L         PQ 
Sbjct: 98  ERFTSEHSSKQVFDRLAGCWTYW-GWKGDYFSSEDDARAFYDELRYMLASQMVAPNSPQW 156

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F      GL             +Y       +     T   S   HPQ  +CF+  + DD
Sbjct: 157 FN----TGLHWAYGVDGPGQGHYY-----VDYKTGKLTKSKSAYEHPQPHACFIQGIEDD 207

Query: 380 LY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L    GI       A L KY  G G++++ +RG G  +    G+S G++ FLK+ +  A 
Sbjct: 208 LVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGRSSGLMSFLKIGDRAAG 266

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------------------------- 466
           A+  G   R+ A    ++  H D+E ++D +                             
Sbjct: 267 AIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVAALVTGSKLNQKHLKAILKACV 326

Query: 467 --KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVS 508
             + +GDD          RR   +     + D  +KRV Q A        + ++  D  S
Sbjct: 327 NCQGSGDDCFDPEKNPALRREVKIARRALVTDAMIKRVIQYAKQGYKEIDFPIYDTDWDS 386

Query: 509 DLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + +                +F  A E         R   KV + + A  LW K+ T  + 
Sbjct: 387 EAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLTSRTTKKVMKTVKARDLWEKIGTAAWA 446

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           +  P + F    N     +  G + +SN C+E        +   CNL S NLL  +    
Sbjct: 447 SADPGLHFNSTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLTFYDTTA 502

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N FD        R    VL+  + +     ++  + ++  R +GLG       L  + + 
Sbjct: 503 NVFDLPAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGLS 562

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV- 720
           Y S E   +       ++  + + S E+A + G +  +K +                G  
Sbjct: 563 YDSKEGRALCGALSAIMTGVSYATSAEMAAKLGPFPGYKKNAAHMLRVIRNHRRAAHGES 622

Query: 721 -----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                  +  + L             ++  WD+  +  +  G RN+    +APT TI  +
Sbjct: 623 RGYEALSVAPVPLDHAGCPIPEAIAHAKAAWDKALELGELHGYRNAQTTVVAPTGTIGLV 682

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    +   + E  I++++ +    G++
Sbjct: 683 MDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRILGYPENQIAEIEAYAVGHGSL 742

Query: 835 ERIPDDLK-KIHATAFEIDPMWLIES 859
              P   +  + A  F  + +  +E+
Sbjct: 743 SNAPAINRSTLKAKGFTDEALAKVEA 768



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + +   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLRETLKLDAEAIAAPNFDLLAAIGFSKREIEAANIHICGAMTVEGAPHLKAEHYSVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|228957725|ref|ZP_04119469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229108908|ref|ZP_04238512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674564|gb|EEL29804.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228801968|gb|EEM48841.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 440

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/470 (22%), Positives = 196/470 (41%), Gaps = 57/470 (12%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I   
Sbjct: 1   MTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEM 60

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SN
Sbjct: 61  YDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSN 120

Query: 584 LCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LCTEI     + E               CNLGS+N++    N +     +   +   +  
Sbjct: 121 LCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMENKE-----IREAVHAGMEA 175

Query: 632 LDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+         KK+N    ++GLG M     L    I Y S EA E A      +
Sbjct: 176 LTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMML 235

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSR 743
           ++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  ++
Sbjct: 236 NYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTK 295

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +       
Sbjct: 296 EDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPM 355

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +      W                            + ++++++   LI+  +  
Sbjct: 356 PYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEI 384

Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 385 QEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|148255613|ref|YP_001240198.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. BTAi1]
 gi|146407786|gb|ABQ36292.1| ribonucleoside-diphosphate reductase class II [Bradyrhizobium sp.
           BTAi1]
          Length = 1258

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/573 (20%), Positives = 211/573 (36%), Gaps = 90/573 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+  V DDL    GI       A L KY  G G++++ +
Sbjct: 183 YKTGKLTKSKSSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRL 242

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +
Sbjct: 243 RGEGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWK 301

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          + +GDD          RR   +     +P
Sbjct: 302 VKEEQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVP 361

Query: 487 DLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYE 526
           D ++KRV Q       +  + ++  D  S+ +                +F  A E     
Sbjct: 362 DNYIKRVIQFAKQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW 421

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   KV + + A  LW K+    + +  P + F    N     +  G + +SN C+
Sbjct: 422 SLIGRTNKKVVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCS 481

Query: 587 EITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E        +   CNL S NLL  +      FD        R    VL+  + +     +
Sbjct: 482 EYMFL----DDTACNLASANLLTFYNTETKHFDVGAYEHLCRLWTVVLEISVLMAQFPSK 537

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++  R +GLG       L  + + Y S E   +       ++  A   S E+A E
Sbjct: 538 AIAELSYEFRTLGLGYANIGGLLMTMGLSYDSKEGRALCGALSAIMTGIAYKTSAEMAGE 597

Query: 705 RGAYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPW 746
            G +  +K +               +G         ++ + L      ++++   +   W
Sbjct: 598 LGPFPGYKKNAAHMLRVIRNHRRAAKGEATGYEALSVNPVPLDHAHCPQVSLVSHAIQAW 657

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D+     +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 658 DDALALGEVNGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 717

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            V    +   + E+ I++++ +    G++   P
Sbjct: 718 AVPAALRVLGYRESEIAEIEAYAVGHGSLSNAP 750



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 835 TVEGAPHLKAEHYAVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDA 894

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W + LK    Y   S+
Sbjct: 895 TVEDCKAAYLLSWKLALKANALYRDGSK 922


>gi|89054963|ref|YP_510414.1| ribonucleotide-diphosphate reductase subunit alpha [Jannaschia sp.
           CCS1]
 gi|88864512|gb|ABD55389.1| ribonucleoside-diphosphate reductase class II [Jannaschia sp. CCS1]
          Length = 1236

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/582 (20%), Positives = 207/582 (35%), Gaps = 99/582 (17%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+  V DDL    GI       A L KY  G G +++ +
Sbjct: 179 YKSGKLTKSTSSYEHPQPHACFIQGVKDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           RG G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 239 RGEGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFIEWK 297

Query: 467 --------------------------------------KNTGD-------DRRRTHDMNT 481
                                                   TGD       D  +   +  
Sbjct: 298 VLEEQKVASIVAGSKMHEKMLNGIFGAIKDYKAEGVALHATGDGSLEDAVDPAKNQSLKQ 357

Query: 482 A------NWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KE 517
           A        IP+ ++KRV   A        +  +  D  S+ ++                
Sbjct: 358 AIREAKKVAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDA 417

Query: 518 FEIAYENYE--RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           F  A EN +  +  +R + KV + I A  LW K+    +    P I + D  N       
Sbjct: 418 FLKAVENDDDWQLINRRDGKVSKTIKARDLWEKVGHAAWACADPGIQYHDTVNAWHTCPE 477

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G +  SN C+E        +   CNL S+NLL  +A   FD +      R     L+  
Sbjct: 478 DGAIRGSNPCSEYMFL----DDTACNLASMNLLTFYAGGTFDAESYMHACRLWTLTLEIS 533

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           + +     ++  + ++  R +GLG       L      Y S E   +       ++  A 
Sbjct: 534 VMMAQFPSKEIAQRSYDFRTLGLGFANIGGLLMNTGHSYDSAEGRALCGSLTAIMTGVAY 593

Query: 696 SASVELAQERGAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELA 737
           + S E+A E G ++ F  +                          ++ + L      +  
Sbjct: 594 ATSAEIASELGPFAGFAKNREHMLRVMRNHRAAAYGKTDGYEEVNVNPVALDHINCPDQT 653

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMS 796
           +   ++  WDE     +  G RN+    IAPT TI  +    +  I+P +  +  K    
Sbjct: 654 LVELAKQAWDEALTLGEAHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAG 713

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           G +  + +  V    +   +  + I ++  +    G I + P
Sbjct: 714 GGYFKIINQSVPAALEGLGYASSQIEEIIAYAVGHGTIGQAP 755



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        +   +D      ++     + D+   +   A          + 
Sbjct: 811 NDPTFDLLRHLGFTKADIEAANDHVCGTMTLEGAPFLKDEHLPVFDCANPCGKKGKRYLS 870

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K    Y   S+ + 
Sbjct: 871 VEAHIHMMAASQSFISGAISKTINMANHATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 930

Query: 910 SVEKSTLKGVDGKLN 924
            +  + ++  D    
Sbjct: 931 PLAAALVEDDDDAAE 945


>gi|163784235|ref|ZP_02179159.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880498|gb|EDP74078.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 464

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 124/572 (21%), Positives = 228/572 (39%), Gaps = 119/572 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  F P KI  AI KA ++V      ++       K LT++ + +L +  K 
Sbjct: 4   KIIKRDGKVVDFIPEKIQNAIFKAMLSVGKPDVKQA-------KELTKKVIEKLEESLKE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E +QD VE  L++ G  K+ + Y+LYR++R+++R  +            L    
Sbjct: 57  KQIPTVEQVQDIVEQVLIEKGLSKVAKSYILYRQKRAEIRREKQQI---------LNKKE 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            D     F+   L+++     +                         D+   ++ S + L
Sbjct: 108 LDEIDKKFDINALQVLASRYLA------------------------KDINGRIVESPKEL 143

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC--RYIEEG---V 264
            E+   +  + +    EK+  +      +K ++    E   L    +   +Y  EG   V
Sbjct: 144 FERVAIHTTIPSILYDEKVFSKKKLKNKQKDEEINEKEFTGLKIGKYSLNQYHIEGLIRV 203

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
             RL  E  M   L  +   +K      F                               
Sbjct: 204 YKRLNKEKHMKKSLSEIIKMIK---KGQFN------------------------------ 230

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
                    E EK   +++ L++   FM +TP L N G       +CF+  + D L  I 
Sbjct: 231 ---------EYEKEIEDYFYLMTDKKFMPNTPVLVNFGRPLGMGMACFVLDIEDSLISIM 281

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             L+  A++ K  GG G +++ +R  G +I  TNG+S G I F+ + +     + QGG R
Sbjct: 282 ETLKNAALIFKAGGGCGYNFSKLRPKGDYISTTNGRSSGPIAFMTLYDKMTEVIKQGGVR 341

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA    L++ H D+EEF+  +K    + ++  + N + ++ + F     +N  + L +P
Sbjct: 342 RGANMGILDSDHPDIEEFITAKK----ENKQLTNFNISVFLKEDFWNYYKKNKPYPLINP 397

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +                             V++ I+  AL+  ++   +E+  P + F 
Sbjct: 398 RDGK---------------------------VWKYINPKALFNMIVYRGWESAEPGLLFD 430

Query: 565 DPCNIRSP-QQHVGVVHSSNLCTEITLNSSSE 595
           D  N  +P  +H G ++++N C E+ L  +  
Sbjct: 431 DNINKYNPLLKHFGKIYATNPCGEVVLYPNES 462


>gi|83953823|ref|ZP_00962544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
 gi|83841768|gb|EAP80937.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
          Length = 1217

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/572 (19%), Positives = 197/572 (34%), Gaps = 88/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +
Sbjct: 171 YKSGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 231 RAAGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289

Query: 467 KNTGDD-----------RRRTHDMNTAN-----------------------------WIP 486
                             R  + +  A                               IP
Sbjct: 290 VIEEQKVASIVAGSKMHERELNKLFAAIKAWDGAEADAYDPAKNDQLKAAIRSAKKCAIP 349

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--E 526
           + ++KRV   A        +  +  D  S+ +                 F  A E     
Sbjct: 350 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADW 409

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              DR   +V + I A  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 410 ELLDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMAGELG 585

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+                      G+        +  + L      +  +   +   WDE
Sbjct: 586 AFPGHAKNADHMLRVIRNHRNAAHGNTDGYEALSVKPVPLDHANCPQANLIDIATATWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALRLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
               ++  +  A I ++  +    G I   P 
Sbjct: 706 PAALEKLGYGSAQIEEIVGYAVGHGTIGNAPA 737



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + LK      + +   +D      ++     +  +   I   A            
Sbjct: 792 NDPTFDLLKSLGFSKKDIEAANDHVCGTMTLEGAPHLKPEHYGIFDCANPCGKKGKRYLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ + 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQNAYELSWSLGVKANALYRDGSKLSQ 911

Query: 910 SVEKSTLKGVDGKLN 924
            +  + ++  D    
Sbjct: 912 PLASALVEDDDEAAE 926


>gi|328543988|ref|YP_004304097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [polymorphum gilvum SL003B-26A1]
 gi|326413732|gb|ADZ70795.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Polymorphum gilvum SL003B-26A1]
          Length = 1004

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 198/576 (34%), Gaps = 89/576 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGND 403
                         S    PQ+ +  + +V DDL    GI       A L KY  G G +
Sbjct: 175 WHVDLASGEAVASTSAYERPQVHASIILSVKDDLVGDNGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  +    GKS G++ FLKV +  A ++  G   R  A    ++  H D+E+F
Sbjct: 235 FSAIRGAGEPLDH-GGKSAGLLSFLKVGDAAAGSLRSGGTTRAAAKMVVVDIDHPDIEDF 293

Query: 463 LDLRKNTGD--------------------------------------DRRRTHDMNTANW 484
           +D +    +                                      +  R  +   A  
Sbjct: 294 IDWKVKEEEKVAAIVAGSKMAARRLSRILEIVDAVEHHRYRDNAYKRELDRAIEEARAAL 353

Query: 485 IPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYEN-- 524
           IPD +++RV            +  +  D  SD +                 F  A E   
Sbjct: 354 IPDGYIERVIHFAEQGHGGLEFRTYDVDWDSDAYRTVSGQNANNSVRVPDAFLEAVERGA 413

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R   R + +  R++ A ALW K+    + +  P + F    N        G ++ SN 
Sbjct: 414 PWRLVQRTDPRKGREVDARALWHKVAGAAWASADPGVQFDTTINAWHTCPRSGRINGSNS 473

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C+E        +   C L S+NL+A   A+  F  D     +R     LD  I +  +  
Sbjct: 474 CSEFMFL----DDTACPLASLNLMAFRDADGGFRVDDFRHAVRLWTLSLDISISMAQYPS 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               +    +R IGLG       L  L IPY S             ++      S ELA 
Sbjct: 530 RATARRTARYRPIGLGYANLGGLLMSLGIPYDSDAGRAYCAAVTALLTGWTYRTSAELAA 589

Query: 704 ERGAYSSFKGSLW--------------------DQGVFPIDSIGLLAEVRDELAMNRTSR 743
           E+G +  ++ +                               + L A    +  ++  + 
Sbjct: 590 EQGPFEGYRANAAHMLRVIRNHRRAAHGTTQVSAYEGLATPPVPLGASACPDAPLHAAAV 649

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
             WD+     +  G RN+    IAPT TI  +    +  I+P +  +  K    G F  +
Sbjct: 650 EAWDQALALGERHGYRNAQASVIAPTGTIGLVMDCATTGIEPDFALVKFKKLAGGGFFKI 709

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            + +V    +R  + E  + D+  H    G++E  P
Sbjct: 710 INGMVPTALRRLGYAEHEVRDIVAHAVGHGSLELAP 745



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 13/146 (8%)

Query: 809 ELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFEIDPMW--------LI 857
           +L ++  +  A I     H     S+     +  +   +   A                I
Sbjct: 806 DLLRQLGFTRAQIEAANAHVCGTMSLEGAPHLRLEHYPVFDCANPCGSKGTRFLPVDSHI 865

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST- 915
              +  Q ++  A S  + +    S +     Y  +W +GLK     R  S  S   +  
Sbjct: 866 RMMAAAQPFVSGAISKTVNMPNKASVEDCKTAYGLSWRLGLKANALYRDGSKLSQPLNLR 925

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIP 941
           L+  D          P   +     P
Sbjct: 926 LREDDDAQEEDAAEGPADESPPFDAP 951


>gi|167833823|gb|ACA02699.1| RR-1 [Spodoptera frugiperda MNPV]
          Length = 850

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 148/683 (21%), Positives = 268/683 (39%), Gaps = 90/683 (13%)

Query: 226 EKLRREVL---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
               +EV+   T +++   ++    M+ LY +          +       +       L 
Sbjct: 209 SNFDKEVVQIVTEMHEDIHESFQVVMKNLYHK---------NEIGQRLYCLAMVYGEELN 259

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             L+++RD+ ++   L++  ++       + +E  Q  FMRVA+ +   + +K    +E 
Sbjct: 260 KVLRHDRDYTYD---LRLYENK------NNLLERVQHMFMRVALTMYGDDIQK---VIES 307

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           Y+++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G 
Sbjct: 308 YHMMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGA 367

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +      V                 +  L V N+    +    K       ++E WH +V
Sbjct: 368 VDLYMQNV----------------SVKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEV 411

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           + F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE
Sbjct: 412 KNFIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFE 468

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            AY  +E+     E    + + A  L + ++  +   G+  + FKD  N          +
Sbjct: 469 QAYVKFEK-----EHINAKIVKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFS------I 517

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
               +   I  ++S       NL            QFDY+ L    +  VR LD +I+IN
Sbjct: 518 EDEQVKYNIVFSASVAVDKCVNL---------ETKQFDYNLLRRITKNVVRDLDAMININ 568

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + ++K +        I +G+ GF   L LL   +   EA  +     E I + AI AS 
Sbjct: 569 MYPLDKFEN---KKHNIAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASN 625

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+     +        +         +  ++ +    N T    W  L ++V+  G++
Sbjct: 626 ELAEASKELNESGKKKSHRNE------KITQQIYNVYTDNETLMWDWQSLHEKVERYGVK 679

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +   ++     T   I G   +  P    LY    ++     +   LV  L   +L    
Sbjct: 680 HVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALAHENLNTPT 734

Query: 820 MISDLKY-HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           +I+ +    +GS+ N + IPD +KK+     E D   L +       +IDQ Q L L+  
Sbjct: 735 VINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQELILHDT 793

Query: 879 EPSGKKLDFIY---RQAWLMGLK 898
                  D IY    +AW   LK
Sbjct: 794 NY-----DNIYCNILKAWQNKLK 811


>gi|291240499|ref|XP_002740156.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Saccoglossus kowalevskii]
          Length = 316

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/261 (36%), Positives = 148/261 (56%), Gaps = 14/261 (5%)

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           KA+ SN  HR IG+G+ G   A  L+  P+ S EA+ +  +  E I + A+ AS ELA+ 
Sbjct: 61  KARNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAER 120

Query: 705 RGAYSSFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            G Y S+K   G    +G+   D   +            T    WD LKK + T G+RNS
Sbjct: 121 DGVYESYKFGDGCPVSKGILQYDMWDVTP----------TDLHDWDALKKDIATHGLRNS 170

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A  PTA+ A I G ++S++P   N+Y +  +S +F VVN  L+ +L +  LW++ M 
Sbjct: 171 LLLAPMPTASTAQILGNNESVEPYTTNIYSRRVLSKEFQVVNHHLLKDLTEMGLWNDDMK 230

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
           + L  ++GSI +I+ IPD +KK++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+
Sbjct: 231 NLLIANNGSIQSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPN 290

Query: 882 GKKLDFIYRQAWLMGLKT-TY 901
             KL  ++  AW  GLKT  Y
Sbjct: 291 YGKLTSMHFFAWKQGLKTGMY 311


>gi|213022042|ref|ZP_03336489.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 395

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 180/401 (44%), Gaps = 31/401 (7%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           + SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 1   MVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 60

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 61  MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 120

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +  +   +NA   LFSP ++   +     +  I+    E  AD    K +  I+A   ++
Sbjct: 121 ITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--INARDFFQ 178

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSE 595
            +  + FE+G+ +I F+D  N  +     G ++ SNLC+EI               +   
Sbjct: 179 TLAEIQFESGYLYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNLDYTHIG 236

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHR 654
               CNLGS+N+      +  D   +  T+ TA+R L  V D++   ++      N    
Sbjct: 237 HDISCNLGSLNIA-----HVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASH 291

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  
Sbjct: 292 AIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQ 351

Query: 714 SLWDQG-----VFPIDSIGLLAEVRDELA---MNRTSRLPW 746
           S +  G         D     A+VR   A   +   +R  W
Sbjct: 352 SRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMW 392


>gi|269125830|ref|YP_003299200.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
 gi|268310788|gb|ACY97162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
          Length = 1370

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/474 (23%), Positives = 181/474 (38%), Gaps = 33/474 (6%)

Query: 316 MPQAFFMRV---------AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +    RV         A G    + + E    E    L    F  ++P  FN GT+ P
Sbjct: 90  SLKQLVDRVVKVYVDTGKAHGYFASDEDAEIFDHELKYALIHQIFSFNSPVWFNVGTKSP 149

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            Q+S+CF+ +V D +  I    +E  ++ K   G G + + +R     +  + G + G +
Sbjct: 150 WQVSACFILSVDDTMESILDWYKEEGIIFKGGSGAGLNLSRIRSS-KELLSSGGTASGPV 208

Query: 426 PFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            F++ A+ +A  +  G   R+ A    L+  H D+EEF+  +    D  R   D   A +
Sbjct: 209 SFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIWTKAREEDKIRALRD---AGF 265

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISA 542
             DL  K +T        +   VSD       EF  A EN E    R     +V   + A
Sbjct: 266 DMDLGGKDITSVQYQNANNSVRVSD-------EFMRAVENDEEFGLRARLTGEVIETVRA 318

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L+R M    +E   P I + D  N        G + +SN C+E     +S     CNL
Sbjct: 319 RDLFRAMAQAAWECADPGIQYDDTINDWHTNPETGRITASNPCSEYMSLDNSS----CNL 374

Query: 603 GSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            SINLL     ++ FD  +        +  +D  I       EK  ++   +R +G+G  
Sbjct: 375 ASINLLKFLREDDTFDITRFVKLTELIITAMDISITFADFPTEKIAETTRAYRQLGIGYA 434

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
              + L      Y S     +A      ++  A   S ELA   GAY  +  +       
Sbjct: 435 NLGALLMATGHAYDSEGGRSLAAAITSLMTATAYRRSAELAGIVGAYDGYARNAEAHKRV 494

Query: 722 PIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                    ++R     + A++  +   W +     +  G RN+    +APT  
Sbjct: 495 MRKHAAANDQLRPLEEMDKAIHAEATRQWSQCLALGEKNGYRNAQASLLAPTGC 548



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 771  TIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            TI  +    +  I+P       K  + G    + +  V    ++  + +  +  +  +  
Sbjct: 978  TIGLMMDCDTTGIEPDLALKKFKKLVGGGSMEIVNHTVPRALRKLGYQQEQVEAIVEYIS 1037

Query: 830  SIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
              G++   P    +  ++   A     I PM  I   +  Q ++  A S  + + E  + 
Sbjct: 1038 EHGHVVDAPGLRPEHYEVFDCAMGERAISPMGHIRMMAAVQPFLSGAISKTVNMPEHATV 1097

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + ++ +Y + W MGLK     R         S
Sbjct: 1098 EDIEKVYFEGWKMGLKALAIYRDNCKVGQPLS 1129


>gi|169334439|ref|ZP_02861632.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259156|gb|EDS73122.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
          Length = 987

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/622 (18%), Positives = 227/622 (36%), Gaps = 59/622 (9%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGL 400
           + L  +     T           Q S+CF+ ++ D L G             L K   G+
Sbjct: 154 DHLYYYDIKSGTVKESKDRYTRTQASACFILSIKDTLLGDNSISEQYITETKLFKGGSGV 213

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDV 459
           G +++ +R +   +      S  ++ FLK  +  A A+  G   R+ A     +  H ++
Sbjct: 214 GTNFSNLRAINEGLSSGGKSSG-LMSFLKGFDRNAGAIKSGGTTRRAAKMVITDIDHPEI 272

Query: 460 EEFLDLRKNTGDDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           E+F+  +    D  R    M        + +     QN   ++    E         ++ 
Sbjct: 273 EDFITWKAREEDKVRALGKMGYDMSMDGEAYATVSGQNGNNSVRLNKEFMQKVLHLDEDP 332

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
           +  +E       R + KV RK+    LW  +    +    P + F D  N          
Sbjct: 333 DADFE----LKGRVDDKVNRKVKVKELWDLICQSTWNCADPAVQFDDTFNDWHTCPAGED 388

Query: 578 --------VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRT 627
                    ++++N C+E     ++     CNL SIN+   F     +F  +     I  
Sbjct: 389 GKVGAKHNRINATNPCSEYAFLDNT----ACNLASINIYRFFSKEEGKFKLNDYIHLISL 444

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
              VL+  I       ++  + +H  R  GLGL    S L +L  PY S E   ++    
Sbjct: 445 IQLVLEASIHWGQFPTKEVARKSHLFRTTGLGLANMASLLMVLGYPYDSDEGRNLSASLC 504

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLW---------DQGVFPID---------SIGLL 729
             ++  +   S  +A+E G ++ +  +            +    ID          + L 
Sbjct: 505 SIMTAQSYLVSSLMAKEVGPFAKYDINKEHLLKVLRNSARCSLAIDDNFEGLDYSPVRLD 564

Query: 730 AEVRDELAMNR---TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
            ++  E+ +       ++ W +  +     G+RN+    IAPT TI+      + S++P 
Sbjct: 565 EDLMTEMGLEEVLNAGKILWIKAIEGANRYGVRNAQVSVIAPTGTISFAMDCGATSLEPF 624

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH------DGSIGNI----- 834
           Y N+  KS   G    + + ++ +      + +  +  +K +      +G   +      
Sbjct: 625 YSNVVYKSLAGGGMMELVNPVLEDALINLGYSDEQVDKIKDYLLEKDENGMFVHFNLNDA 684

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
             + ++ KKI  TA +I P   +   +     I  + S  + +    + K++  IY+ ++
Sbjct: 685 PYLREEDKKIFETANDISPSGHVLMVAAVTPMISGSVSKTVNMPVNATVKEISDIYKLSY 744

Query: 894 LMGLKTTYYLRSRSATSVEKST 915
           + G+K     R  S      +T
Sbjct: 745 ITGVKAISVYRDGSKACQPLNT 766


>gi|83942582|ref|ZP_00955043.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
 gi|83846675|gb|EAP84551.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
          Length = 1217

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/572 (19%), Positives = 196/572 (34%), Gaps = 88/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL G           A L KY  G G +++ +
Sbjct: 171 YKSGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 231 RAAGEKLS-GGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289

Query: 467 KNTGDD-----------RRRTHDMNTAN-----------------------------WIP 486
                             R  + +  A                               IP
Sbjct: 290 VIEEQKVASIVAGSKMHERELNKLFAAIKAWDGAEADAYDPAKNDQLKAAIRSAKKCAIP 349

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--E 526
           + ++KRV   A        +  +  D  S+ +                 F  A E     
Sbjct: 350 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADW 409

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              DR   +V + I A  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 410 ELLDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMAGELG 585

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           A+                      G         +  + L      +  +   +   WDE
Sbjct: 586 AFPGHAKNADHMLRVIRNHRNAAHGKTDGYEALSVKPVPLDHANCPQANLIDIATATWDE 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALRLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
               ++  +  A I ++  +    G I   P 
Sbjct: 706 PAALEKLGYGSAQIEEIVGYAVGHGTIGNAPA 737



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + LK      + +   +D      ++     +  +   I   A            
Sbjct: 792 NDPTFDLLKSLGFSKKDIEAANDHVCGTMTLEGAPHLKPEHYGIFDCANPCGKKGKRYLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ + 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQNAYELSWSLGVKANALYRDGSKLSQ 911

Query: 910 SVEKSTLKGVDGKLN 924
            +  + ++  D    
Sbjct: 912 PLASALVEDDDEAAE 926


>gi|257869921|ref|ZP_05649574.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804085|gb|EEV32907.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 831

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/487 (23%), Positives = 202/487 (41%), Gaps = 47/487 (9%)

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL---YGKEFEIAYENYERQADRG 532
               N +  + + FM  V ++  + L  PD  +   +    Y  ++    +  E +A   
Sbjct: 358 LTGANISVCLTEEFMDAVKKDDWYALRFPDIDNYSEEEMAEYDAKWAEVGDVREWEAAGH 417

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLN 591
           ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C E  L 
Sbjct: 418 KVKTYQRIRARELWNLITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLT 477

Query: 592 SSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 AVCNL ++NL  +A       D+ KL  T++TAVR  DNVID   +  +K ++ 
Sbjct: 478 P----YAVCNLAAVNLANMADHQTGTVDFAKLRETVKTAVRFQDNVIDATPYFFDKNERQ 533

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLG+MG    L      Y S E  ++ D+  E I+  A  AS++LA+E+G++ 
Sbjct: 534 AKGERRVGLGIMGLADLLIYCEKTYGSAEGNQLVDQIFETIAITAYEASIDLAKEKGSFP 593

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              G                  +R++       +     +++ V   G+RNS+ + +APT
Sbjct: 594 FLIG----------KDDQETQALREKFIDTGYMKKMPAHIREGVMQFGIRNSHLLTVAPT 643

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P Y   Y +S   G F  +N+ +V E                    
Sbjct: 644 GSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAAIVEEYLA----------------- 686

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
              + E+  D L     +A E+ P   +      Q+W+D + S  +   +  S  ++  +
Sbjct: 687 --NHPEQDKDQLPDFFISAMELSPEEHVGVQCAIQRWVDSSISKTVNAPKGYSVSQVAKV 744

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           Y   +  G K  T Y   SR +  +   TL+ +D ++N     +P     +        S
Sbjct: 745 YMDLYDGGAKGGTVYVDGSRDSQVL---TLEAIDNEIN--TQVEPAEDQFTTQTNEPVIS 799

Query: 947 DTECEVC 953
              C +C
Sbjct: 800 GDICPIC 806



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 306 FLHINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
            +    + IE P   +      RVA G++ KE E+E    +FY  ++  + + +   L+ 
Sbjct: 112 LVKRRKNEIEKPLELYFEQIARRVARGISDKELEQELFLEQFYQQIAEQNLIPAGRVLYG 171

Query: 361 SGTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT       +CF+   + D   GI    QE   +    GG+G + + +R     +HG +
Sbjct: 172 AGTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKACVVHGVS 231

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G+S G + +L    +    V QGG R+GA    +  WH D+  F+  +    
Sbjct: 232 GRSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDILAFIISKIQNP 283


>gi|15965308|ref|NP_385661.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           meliloti 1021]
 gi|307307934|ref|ZP_07587659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
 gi|307317165|ref|ZP_07596606.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|15074488|emb|CAC46134.1| Vitamin B12-dependent ribonucleotide reductase [Sinorhizobium
           meliloti 1021]
 gi|306897253|gb|EFN27998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|306901550|gb|EFN32153.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
          Length = 1263

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/572 (20%), Positives = 211/572 (36%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R 
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRA 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL----- 463
            G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++     
Sbjct: 241 EGERLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 464 -------------------------DLRKNTGDDR----------RRTHDMNTANWIPDL 488
                                     +  +  DD           +R         +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKACINCDGSDDACFDPKQNPALKREIRAAKQALVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQ 528
           ++KRV Q       +  +  +  D  S+ +                +F  A E       
Sbjct: 360 YVKRVIQFARQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVEADGDWHL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + +V + + A  LW  +    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGRVMKTLKARDLWESISHAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+     A  + +       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLMQFKDAATKRINIGDYEHAVRLWTVVLEVSVMMAQFPSREI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY SPE   IA      ++  A + S E++ + G
Sbjct: 536 AELSYEYRTLGLGYANIGGLLMSSGIPYDSPEGRAIAGALTAIMTGVAYATSAEISAKLG 595

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  F                   G         ++ + L+     +  +   ++  WD+
Sbjct: 596 PFPGFAPNRDNMLRVMRNHRRAAHGETAGYEGLSVNPVALVHGDCPDQDLIAHAKGAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 AVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ I++++ +    GN+ + P 
Sbjct: 716 PEALRTLGYSESQIAEMEAYAVGHGNLNQAPA 747



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      + S   N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKETLKVSDEQLASMDFNLLEHLGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|319997477|gb|ADV91375.1| rr1 [Spodoptera frugiperda MNPV]
          Length = 838

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 150/684 (21%), Positives = 267/684 (39%), Gaps = 92/684 (13%)

Query: 226 EKLRREVL---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
               +EV+   T +++   ++    M+ LY +          +       +       L 
Sbjct: 197 SNFDKEVVQIVTEMHEDIHESFQVVMKNLYHK---------NEIGQRLYCLAMVYGEELN 247

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             L+++RD+ ++   L++  ++       + +E  Q  FMRVA+ +   + +K    +E 
Sbjct: 248 KVLRHDRDYTYD---LRLYENK------NNLLERVQHMFMRVALTMYGDDIQK---VIES 295

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           Y+++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G 
Sbjct: 296 YHMMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGA 355

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +      V                 +  L V N+    +    K       ++E WH +V
Sbjct: 356 VDLYMQNV----------------SVKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEV 399

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           + F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE
Sbjct: 400 KNFIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFE 456

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            AY  +E+     E    + + A  L + ++  +   G+  + FKD  N          +
Sbjct: 457 QAYVKFEK-----EHINAKIVKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFS------I 505

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
               +   I  ++S       NL            QFDY+ L    +  VR LD +I+IN
Sbjct: 506 EDEQVKYNIVFSASVAVDKCVNL---------ETKQFDYNLLRRITKNVVRDLDAMININ 556

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + ++K +        I +G+ GF   L LL   +   EA  +     E I + AI AS 
Sbjct: 557 MYPLDKFEN---KKHNIAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASN 613

Query: 700 ELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ELA+       S K   +           +  +       N T    W  L ++V+  G+
Sbjct: 614 ELAEASKELNESGKKKSYRNEKITQQIYNVYTD-------NETLMWDWQSLHEKVERYGV 666

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           ++   ++     T   I G   +  P    LY    ++     +   LV  L   +L   
Sbjct: 667 KHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALAHENLNTP 721

Query: 819 AMISDLKY-HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            +I+ +    +GS+ N + IPD +KK+     E D   L +       +IDQ Q L L+ 
Sbjct: 722 TVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQELILHD 780

Query: 878 DEPSGKKLDFIY---RQAWLMGLK 898
                   D IY    +AW   LK
Sbjct: 781 TNY-----DNIYCNILKAWQNKLK 799


>gi|89068838|ref|ZP_01156221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
 gi|89045608|gb|EAR51671.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
          Length = 1226

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 121/618 (19%), Positives = 210/618 (33%), Gaps = 97/618 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RY L    +    PQ F      GL             FY       +     T   S  
Sbjct: 133 RYMLATQMAAPNSPQWFN----TGLHWAYGIDGPAQGHFY-----VDWKTGKLTKSKSSY 183

Query: 364 RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  +    GK
Sbjct: 184 EHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEKLS-GGGK 242

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD------- 472
           S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +             
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWKVLEEQKVASIVAG 302

Query: 473 ----RRRTHDMNTA-----------------------------NWIPDLFMKRVTQ---- 495
                ++ + +  A                               IP+ ++KRV      
Sbjct: 303 SKMHEQKLNAIFAAIRTWDGAEADAYDPKSNGALKEAIREAKKVAIPETYVKRVLDYARQ 362

Query: 496 ----------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYER------QADRGEIKVFRK 539
                     +  W   + + VS  +         A+    R         R +  V R 
Sbjct: 363 GHTSIHFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLEAVRNDGSWDLISRTDGSVTRT 422

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW ++    +    P I F D  N        G +  SN C+E        +   
Sbjct: 423 VQARDLWEQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSNPCSEYMFL----DDTA 478

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+NLL    +  F  ++     R     L+  + +     ++  + ++  R +GLG
Sbjct: 479 CNLASMNLLTFHKDGAFLAEEYMHATRLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLG 538

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-- 717
                  L  + + Y S E   +       ++  A + S E+A E GA+S ++ +     
Sbjct: 539 YANIGGLLMNMGLGYDSDEGRAMGGALTAIMTGVAYATSAEIAGELGAFSGYERNREHML 598

Query: 718 ----------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
                                +  + L      +  + + +   WDE     +  G RN+
Sbjct: 599 RVIRNHRNAAYGKSDGYEALAVKPVALDHANCPDRRLVQLATAAWDEALALGEKHGYRNA 658

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI  +    +  I+P +  +  K    G +  + +  V        +  A 
Sbjct: 659 QSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDTLGYSAAQ 718

Query: 821 ISDLKYHDGSIGNIERIP 838
           + ++  +    G +   P
Sbjct: 719 VDEIVNYAVGRGTLVGAP 736



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ +  
Sbjct: 853 EAHIRMMAAAQSFISGAISKTINMANDATIEDCQQAYELSWSLGVKANALYRDGSKLSQP 912

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  + ++  +     +           L 
Sbjct: 913 LAAALIEDDEEARETLETGSVPEKAAVLA 941


>gi|125860265|ref|YP_001036435.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
 gi|120969410|gb|ABM45853.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
          Length = 839

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 152/689 (22%), Positives = 272/689 (39%), Gaps = 102/689 (14%)

Query: 226 EKLRREVL---TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
               +EV+   T +++   ++    M+ LY +          +       +       L 
Sbjct: 198 SNFDKEVVQIVTEMHEDIHESFQVVMKNLYHK---------NEIGQRLYCLAMIYGEELN 248

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
             L+++RD+ ++   L++  ++       + +E  Q  FMRVA+ +   + +K    +E 
Sbjct: 249 KVLRHDRDYTYD---LRLYENK------NNLLERVQHMFMRVALTMYGDDIQK---VIES 296

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSS---CFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           Y+++S   +  S      +GT   QL++    ++    D+++  +  +QE A +    G 
Sbjct: 297 YHMMSLRMYAHSDLAFACAGTNSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGA 356

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +      V                 +  L V N+    +    K       ++E WH +V
Sbjct: 357 VDLYMQNV----------------SVKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEV 400

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           + F++  +N  D   + + +     IPD+FM RV  N  WTL  P+  + L   YG +FE
Sbjct: 401 KNFIETIRNNSD---KVNFLQFTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFE 457

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            AY  +E+     E    + + A  L + ++  +   G+  + FKD  N          +
Sbjct: 458 QAYVKFEK-----EHINAKIVKAKDLLKLIIDTMRINGNLSVMFKDTFNNNFS------I 506

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
               +   I  ++S       NL            QFDY+ L    +  VR LD +I+IN
Sbjct: 507 EDEQVKYNIVFSASVAVDKCVNL---------ETKQFDYNLLRRITKNVVRDLDAMININ 557

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + ++K +        I +G+ GF   L LL   +   EA  +     E I + AI AS 
Sbjct: 558 MYPLDKFEN---KKHNIAVGMQGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASN 614

Query: 700 ELAQ------ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           ELA+      E G   S++     Q ++ + +             N T    W  L ++V
Sbjct: 615 ELAEASKELNESGKNKSYRNEKITQQIYNVYTD------------NETLMWDWQSLHEKV 662

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           +  G+++   ++     T   I G   +  P    LY    ++     +   LV  L   
Sbjct: 663 ERYGVKHVTFVS-NTYKTAFEILGTKTTSGPFNSFLYQIEKIN----YIEEVLVRALAHE 717

Query: 814 DLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +L    +I+ +    +GS+ N + IPD +KK+     E D   L +       +IDQ Q 
Sbjct: 718 NLNTPTVINSILATKNGSVQNNDLIPDHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQE 776

Query: 873 LNLYLDEPSGKKLDFIY---RQAWLMGLK 898
           L L+         D IY    +AW   LK
Sbjct: 777 LILHDTNY-----DNIYCNILKAWQNKLK 800


>gi|257874881|ref|ZP_05654534.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257809047|gb|EEV37867.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 825

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 122/501 (24%), Positives = 208/501 (41%), Gaps = 54/501 (10%)

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL---YGKEFEIAYENYER 527
            +       N +  + + FM+ V  +  + L  PD  +        Y  ++    +  E 
Sbjct: 350 KESDFLTGANISVCLTEEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDVREW 409

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
            A   ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C 
Sbjct: 410 AAAGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCG 469

Query: 587 EITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E  L       AVCNL +INL  +A       D+ KL  T++TAVR  DNVID+  +  +
Sbjct: 470 EQPLTP----YAVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFD 525

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E
Sbjct: 526 KNEQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKE 585

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G++    G           +      +R +       +     +++ V   G+RNS+ +
Sbjct: 586 KGSFPFLIG----------KNDQETQALRKKFIDTGYMKKMPAHIREGVLRFGIRNSHLL 635

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            +APT +   + GVS  ++P Y   Y +S   G F  +N+ +V+E               
Sbjct: 636 TVAPTGSTGTMTGVSTGLEPYYSFSYYRSGRLGKFIEINAEIVDEYL------------- 682

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                 + + ER   +L     +A E+ P   +      Q+W+D + S  +   +  +  
Sbjct: 683 ------MDHPERTKAELPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGYTVS 736

Query: 884 KLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA----VPVTDPNSSTHS 937
           ++  +YR  +  G K  T Y   SR +  +   TL+ V+ +L A    +PV   +    S
Sbjct: 737 QVAKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLPVVQVDEPVAS 793

Query: 938 LGIPSSC---TSDT--ECEVC 953
             I   C   T +    C  C
Sbjct: 794 GEICPICHEGTIEEIGGCSTC 814



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 306 FLHINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVEFYNL-LSSFHFMCSTPTLF 359
            +    S IE P   F      RVA G++  E   ++R  E ++  + + + + +   L+
Sbjct: 108 LVKRRKSDIEKPLELFFEQVAHRVAKGISANEAHDQERFFEAFHQQIVAQNLIPAGRVLY 167

Query: 360 NSGTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            +GT       +CF+   + D   GI    QE   +    GG+G + + +R   + +HG 
Sbjct: 168 GAGTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGV 227

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           +G+S G + +L    +    V QGG R+GA    +  WH D+  F+  +    
Sbjct: 228 SGRSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFILSKIQNP 280


>gi|91977382|ref|YP_570041.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB5]
 gi|91683838|gb|ABE40140.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB5]
          Length = 1256

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 134/686 (19%), Positives = 235/686 (34%), Gaps = 107/686 (15%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQA 319
            R   E         LA    Y   +  +Y       +  YD  RY L         PQ 
Sbjct: 98  ERFTSEHSSKQVFDRLAGCWTYW-GWKGDYFSSEDDARAFYDELRYMLASQMVAPNSPQW 156

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F      GL             +Y             T   S   HPQ  +CF+  + DD
Sbjct: 157 FN----TGLHWAYGVDGPGQGHYY-----VDHKTGKLTKSKSAYEHPQPHACFIQGIEDD 207

Query: 380 LY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           L    GI       A L KY  G G++++ +RG G  +    G+S G++ FLK+ +  A 
Sbjct: 208 LVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLS-GGGRSSGLMSFLKIGDRAAG 266

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLR----------------------------- 466
           A+  G   R+ A    ++  H D+E ++D +                             
Sbjct: 267 AIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVSALVTGSKLNQKHLKAILKACV 326

Query: 467 --KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSPDEVS 508
             + +GDD          RR   +     + D  +KRV Q A        + ++  D  S
Sbjct: 327 NCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQYAKQGYKEIDFPIYDTDWDS 386

Query: 509 DLHDLYG-----------KEFEIAYE--NYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + +                +F  A E         R   KV + + A  LW K+    + 
Sbjct: 387 EAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLTGRTTKKVMKTLKARDLWEKIGYAAWA 446

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
           +  P + F    N     +  G + +SN C+E        +   CNL S NLL  +    
Sbjct: 447 SADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMFL----DDTACNLASANLLTFYDTTA 502

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N FD        R    VL+  + +     ++  + ++  R +GLG       L  + + 
Sbjct: 503 NVFDLGAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYEFRTLGLGFANIGGLLMTMGLS 562

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGV- 720
           Y S E   +       ++  + + S E+A + G +  +K +                G  
Sbjct: 563 YDSKEGRALCGALSAIMTGVSYATSAEMAAKLGPFPGYKKNAAHMLRVIRNHRRAAHGES 622

Query: 721 -----FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                  +  + L             ++  WD   +  +  G RN+    +APT TI  +
Sbjct: 623 RGYEALSVAPVPLDHAGCPIPEAITHAKAAWDRALELGELHGYRNAQVSVVAPTGTIGLV 682

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    +   + E  I++++ +    G++
Sbjct: 683 MDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRILGYPENQIAEIEAYAVGHGSL 742

Query: 835 ERIPD-DLKKIHATAFEIDPMWLIES 859
              P  +   + A  F  + +  +E+
Sbjct: 743 SNAPAINHSTLKAKGFTDEALAKVEA 768



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 11/137 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  +   + +   + L         + +   +  G  ++     +  D   +   
Sbjct: 789 FLRQTLKIEADAIAAPNFDLLAALGFSKREIEAANIHICGAMTVEGAPHLKADHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSATSVEKST 915
                R  S  S   S+
Sbjct: 909 ANALYRDGSKLSQPLSS 925


>gi|312115570|ref|YP_004013166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220699|gb|ADP72067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1254

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 121/597 (20%), Positives = 218/597 (36%), Gaps = 93/597 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPV 407
           F         S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 FQTGELVRSASAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F++ +
Sbjct: 239 RSEGERLS-GGGKSSGLMSFLKIGDKAAGAIKSGGTTRRAAKMVIVDADHPDIEAFINWK 297

Query: 467 -------------------------------KNTGDD---------RRRTHDMNTANWIP 486
                                          +  G+D          +R      A ++P
Sbjct: 298 VLEEQKVAALVAGSKICAKHLAAIMRACVNCEGHGEDCFDPLKNVALKREIKAARAAFVP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYE 526
           D +++RV   A        +  F  D   + +   G             F  A E  +  
Sbjct: 358 DAYIQRVIHFARQGFKSIEFPSFDTDWEGEAYRTVGGQNSNNTVRVDDSFLRAVEVDSDW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
               R   K  + + A AL  ++    + +  P I F    N        G + +SN C+
Sbjct: 418 HLMSRTTDKAVKTLKARALMDQISEAAWASADPGIQFHTTINDWHTCPASGPIRASNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           E        +   CNL S+NLL+           D +  A   R    VL+  + +    
Sbjct: 478 EYMFL----DDTACNLASLNLLSFRPQGGEGRLVDAEAFAHACRLWTVVLEISVTMAQFP 533

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L +  + Y S E   +A      ++  + + S E+A
Sbjct: 534 SKEIAQLSYDFRTLGLGYANLGGLLMVSGLGYDSDEGRALAAAISALMTGVSYATSAEMA 593

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +E GA++ ++                  G      +     + L   V  +  +   +R 
Sbjct: 594 KELGAFAGYEPNASHMLRVMKNHRRAAYGRDNGYELLSTSPVPLKDGVCPQTDLVTVARE 653

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
            WD++    +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + 
Sbjct: 654 VWDDVISLGQMHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLSGGGYFKII 713

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIES 859
           +  V E  +   + +  I  +  +    G +   P  + K + A  F  + +  +E+
Sbjct: 714 NRAVPEALRNLRYTQTQIDAIIAYAVGRGTLATAPHINHKTLAAKGFTPEKIAAVEA 770



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 11/137 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + K  +      + +   + L         + +  +Y  G+  +     +  +   +   
Sbjct: 791 FCKGVLKLTDEQMAAPSFDLLAAIGFPRAEIDAANEYVCGTMTLEGAPGLKPEHLPVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + +    S       Y  +W + LK
Sbjct: 851 ANPCGKKGKRALSWQSHIRMMAAAQPFISGAISKTINMPNSASIADCREAYMLSWKLALK 910

Query: 899 TTYYLRSRSATSVEKST 915
                R  S  S   S 
Sbjct: 911 ANALYRDGSKLSQPLSA 927


>gi|15894334|ref|NP_347683.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023960|gb|AAK79023.1|AE007620_4 Ribonucleotide reductase, vitamin B12-dependent [Clostridium
           acetobutylicum ATCC 824]
 gi|325508462|gb|ADZ20098.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 987

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 154/813 (18%), Positives = 276/813 (33%), Gaps = 140/813 (17%)

Query: 246 HEMQCLYPEYFCRYIEEGV-KARLLHESMMDFDLVYLANDLKYE--------RDFAFEY- 295
            +++ L+  ++ + +E    K           D+      + ++        +D  F Y 
Sbjct: 2   EDLKILFKRFYTKELESSKTKTVYDLFKWKKVDV----KIIDHKTGKVLTDMKDLEFPYD 57

Query: 296 ---LGLQILYDRYFLHINGSRIEM-PQAFFMRVA------MGLALKE---TEKEKRAVEF 342
                  I+  +YF   +G   E   +     VA         ALK+    + E  A  F
Sbjct: 58  YSQNACDIIASKYFKK-SGIPNECGYENSMKMVAHRLVSFWCEALKDEGIIKTENEASIF 116

Query: 343 YN----LLSSFHFMCSTPTLFNSG------------------------------TRHPQL 368
           Y+     L +  +  ++P  FN+G                                  Q 
Sbjct: 117 YDELVYALLNQMYAPNSPQWFNTGLSLIYGINGEAQGHFYYDSKEKKVLQSKDSYTRTQA 176

Query: 369 SSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           S+CF+ ++ D L G             L K   G G +++ +R  G  +    G S G++
Sbjct: 177 SACFIISIEDKLLGSHSISEQYVTETKLFKGGSGTGTNFSTIRAKGEKLS-GGGISSGLM 235

Query: 426 PFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-AN 483
            FLK  +  A A+  G   R+ A    L   H ++ +++  +    D  +    M   A+
Sbjct: 236 SFLKGLDRNAGAIKSGGTTRRAAKMLCLNVDHPEIMDYITWKAKEEDKVKALGKMGYDAS 295

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD---RGEIKVFRKI 540
           +  + +     QNA  ++        L D + K+      N +   +   R +  V +  
Sbjct: 296 FEGEAYETVSGQNANNSVM-------LSDEFMKKVCNLKNNPDETIELKGRVDSSVNKVE 348

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-- 598
               LW       +    P   F D  N           + +    +I   +   E A  
Sbjct: 349 KISNLWEAFNKSSWRCADPSPLFSDTLNAWHTCPGGEDGNFNADYNKINSTNPCGEYAFL 408

Query: 599 ---VCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
               CNL SINL   +   N  FD +     I     +L+  I       E   +  H  
Sbjct: 409 DDTSCNLASINLYKFYDTENKTFDLEGYKHVIGLVQLLLEASIHWGQFPTEDVARKTHMF 468

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF-- 711
           R  GLG+    + L ++  PY S E   I+   +  ++ ++   S  +A+E GA+  +  
Sbjct: 469 RTTGLGISNLAALLMVMGYPYDSEEGRAISSSLIGVLTGYSYYISSLMAKEVGAFEKYNI 528

Query: 712 ---------KGSLWDQGVF--PIDSIGLLA--------EVRDELAMNRTSRLPWDELKKR 752
                    + S    G    P + IG           E  D   ++   +  W+   + 
Sbjct: 529 NKEHMLKVLRNSARAAGSIDTPFEKIGYKPLVVNHSILEKEDLRYISSELKNSWNSALES 588

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +  G RN+    +APT TI+      S S++P + ++  K    G +  + + L+ E  
Sbjct: 589 GEKYGFRNAQVSVMAPTGTISFAMDCASTSVEPFFSHVIYKKLSGGGYMTLTNPLIQESL 648

Query: 812 QRDLWDEAMISDLKYH-------------------DGSIGNIERIPDDLKKIHATAFE-- 850
           +   + E  I D+  +                   DG I     +  +   I  TA +  
Sbjct: 649 KHLGYSENEIEDITNYILRKKKVKTDDGTEYETILDGKIEGAPHLKKEHLAIFDTANKCG 708

Query: 851 -----IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                I PM  I   +     I  + S  + L  + S +    +   +W +G+K     R
Sbjct: 709 SGNRFISPMGHILMVASIVPLISGSVSKTVNLPKDASVEDFKNVIINSWKLGVKGITLYR 768

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             S  S   +T       L+    T P   T++
Sbjct: 769 DSSKESQPLNT------SLDEASKTAPEDMTYA 795


>gi|294084614|ref|YP_003551372.1| ribonucleoside-diphosphate reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664187|gb|ADE39288.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1215

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 148/746 (19%), Positives = 261/746 (34%), Gaps = 136/746 (18%)

Query: 216 YAKVTARFLLEKLRREVLTTVY-----KKPQKATHHEMQCLYPEYF---------CRYIE 261
           Y K+  RF   ++R    T V+     + P++ +      L  +YF          R  E
Sbjct: 15  YDKLAFRFATSEIRNPDGTIVFRAENVEIPEQFSQVATDILAQKYFRKAGVPAALKRVEE 74

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDR-------------YFL 307
             V + L      +  L  L        D  F      + +YDR             YF 
Sbjct: 75  SAVPSWLWRSIPDEAALAKLPE------DERFTGETSAKQVYDRLAGTWTYWGWKGDYFS 128

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFH----FMCSTPTLF 359
               +++   +  FM  A  +A   + +            +  S  H    F     T  
Sbjct: 129 TEEDAKVYFDEMRFML-ANQMAAPNSPQWFNTGMHWAYGIDGPSQGHYYVDFKTGKLTRS 187

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG G ++  
Sbjct: 188 ASAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGSGENLS- 246

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG----- 470
             GKS G++ FL++ +  A A+  G   R+ A    ++  H D+EE++D +         
Sbjct: 247 GGGKSSGLMSFLRIGDRAAGAIKSGGTTRRAAKMVTVDIDHPDIEEYVDWKVVEEQKVAA 306

Query: 471 -------------------------DDRRR--------THDMNTAN---WIPDLFMKRVT 494
                                    DD  R              +     IP+ +++RV 
Sbjct: 307 LVAGSKLAQKHMGEVMAACQITDGLDDDERFDPKVNKVLRKAIISARKSMIPENYVQRVI 366

Query: 495 QNA-------GWTLFSPDEVSDLH-DLYGKEFEIAYE---NY---------ERQADRGEI 534
           Q A        +  +  D  SD +  + G+    +     +Y              R + 
Sbjct: 367 QFAQQGYNEIEFKTYDTDWDSDAYLTVAGQNSNNSVRVSNDYLQAVLDGGDWNLIKRRDD 426

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V + I A  LW K+    +    P + +    N        G +++SN C+E       
Sbjct: 427 GVAKTIKAKDLWEKIAHAAWACADPGLQYDTTINEWHTCPEGGRINASNPCSEYMFL--- 483

Query: 595 EETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+     +  FD +      R     L+  + +     ++  + ++ +
Sbjct: 484 -DDTACNLASLNLMQFRKQDGTFDIEMFEHGCRFWTLTLEISVLMAQFPSKEIAQLSYEY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L      Y S E   I       ++  + + S E+A E G +  +K 
Sbjct: 543 RTLGLGFANIGGLLMAQGHSYDSDEGRAICGAISAIMTGTSYATSAEIAGEVGPFPQYKK 602

Query: 714 -----------------SLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
                            S         I  + L A+   +  +   ++  WD+       
Sbjct: 603 NAKHMLRVMKNHRLAAHSKASGYKGLSILPVPLDAKSCPDQDLVNAAKAAWDKAVDLGTK 662

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
            G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + +V E   + 
Sbjct: 663 NGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYFKIINRVVPEALDKL 722

Query: 815 LWDEAMISDLKYH---DGSIGNIERI 837
            + +  + D+  +    GS+ N + I
Sbjct: 723 GYGKDQVKDIINYAVGAGSLKNCQSI 748



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + K  +      +N F  N L+      +A+ +   +  GS  +     + D+   I   
Sbjct: 789 FCKDKLGFSDEQLNDFEFNMLEALGFDKDAVEAANIHVCGSMTLEGAPHLKDEHLPIFDC 848

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A     +          I   +  Q +I  A S  + +    + ++    Y  +W +GLK
Sbjct: 849 ANVCGRIGKRFLSVDSHITMMAASQPFISGAISKTINMPNAATVEECGAAYMLSWRLGLK 908

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
               Y   S+ +  +    ++ ++    A+   +   +  +  +
Sbjct: 909 ANALYRDGSKLSQPLSSGLVEDIEDDDEAMAALETPVAAAAPQV 952


>gi|310827646|ref|YP_003960003.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
 gi|308739380|gb|ADO37040.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
          Length = 979

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 123/612 (20%), Positives = 225/612 (36%), Gaps = 59/612 (9%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
                Q S+CF+ ++ D L G             L K   G+G +++ +RG+   +  + 
Sbjct: 169 RYTRTQSSACFILSIEDKLLGHHSISEHYVSETKLFKGGSGVGTNFSSLRGVNEKLS-SG 227

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           G+S G++ FL+  +  A A+  G   R+ A    ++  H ++EEF+D +    D  R   
Sbjct: 228 GQSSGMMSFLQGLDRNAGAIKSGGTTRRAAKMVIVDVDHPEIEEFVDWKVKEEDKVRALG 287

Query: 478 DMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            M        + +     QN+  ++    E  D         E   ++      R +  V
Sbjct: 288 KMGYDISMDGEAYRTVAGQNSNNSVRLNKEFMDAV----INLEHEPDHKMTLKGRVDFAV 343

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCTE 587
            R++S   LW+K+ T  +    P + F D  N                   ++++N C+E
Sbjct: 344 NREVSVKELWQKINTASWACADPGLQFDDLFNAWHTCPGGEDGDTSKKENRINATNPCSE 403

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               +       CNL SIN+   F    N+ D ++ +        VL+  I       E 
Sbjct: 404 YAFLN----DTACNLASINIFRFFDPETNKIDIERFSHLAGLIQLVLEASIYWGQFPTED 459

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++  R  GLGL    S +  L  PY S EA  +       ++ H+   S  +A + 
Sbjct: 460 VARKSYLFRTTGLGLANAASLILALGYPYDSDEARNLIAALCGIMTGHSYYVSAMMAGKV 519

Query: 706 GAYSSFK-GSLWDQ----------GVFPIDSIGL----------LAEVRDELAMNRTSRL 744
           G +  ++  S + +          G    D   +          L E    L ++   + 
Sbjct: 520 GPFVKYEINSPYMKRVIRNHSRVAGYLADDYEEMTYEPLKINHELLEEMGFLNISSRIKD 579

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
            W +     +  G RN+    IAPT TI+      + S++P Y ++  K  + G    + 
Sbjct: 580 AWKDAIDYGEANGYRNAQVSVIAPTGTISFAMDCGATSVEPFYNHVVFKKLVGGGSMEIV 639

Query: 804 SFLVNELKQRDLWDEAMISDLKYH-----------DGSIGNIERIPDDLKKIHATAFEID 852
           + ++    +   +    ISD+  +             S+     I  +   +  TA  I 
Sbjct: 640 NPVMEIALRNLGYKPKEISDILGYMLDKDEKGYLRHDSLSGAPHIKPEHIPVFDTANTIR 699

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P   +   S     I  + S  + L   +  + +  I+  A+  G K     R     S 
Sbjct: 700 PEGHVLMVSAITPMISGSVSKTVNLPSDAEIEDVKKIHLLAYTTGAKAIAVYRDGCKASQ 759

Query: 912 EKSTLKGVDGKL 923
             S+ K  +G+ 
Sbjct: 760 PLSSGKQEEGEK 771


>gi|222085732|ref|YP_002544262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
 gi|221723180|gb|ACM26336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
          Length = 1264

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 215/572 (37%), Gaps = 90/572 (15%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRG 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +  
Sbjct: 241 EGEKLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVK 299

Query: 469 -----------------------------TGDDR-----------RRTHDMNTANWIPDL 488
                                         GD+            +R       + +P+ 
Sbjct: 300 EEQKVAALVTGSKIVAKHLKAIMKATVNCEGDNDDCFDPAKNPALKREIRAAKKDQVPEN 359

Query: 489 FMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYEN--YERQ 528
           +++RV Q       +  +  +  D  S+ +                EF  A EN      
Sbjct: 360 YVQRVIQFARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDEFLRAVENDADWHL 419

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R + K+ + + A  LW  +    + +  P + F    N        G + +SN C+E 
Sbjct: 420 TARKDGKIMKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEY 479

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+     A  + +       +R    VL+  + +      + 
Sbjct: 480 MFL----DDTACNLASLNLMTFKDAATKRINIADYEHAVRLWTVVLEVSVMMAQFPSRRI 535

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY S EA  IA      ++  + + S E+A E G
Sbjct: 536 AELSYEYRTLGLGYANIGGLLMSSGIPYDSDEARAIAGSLTAIMTGISYATSAEMASELG 595

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  FK                  G         ++ + L+     +  +   ++  WD+
Sbjct: 596 TFPMFKPNRENMLRVIRNHRRAAYGETSGYEGLAVNPVALIHSENPDQDLVAHAKAAWDK 655

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 656 ALALGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 715

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + E+ +++++ +    GN+ + P 
Sbjct: 716 PEALRALGYSESQLAEIEAYAVGHGNLNQAPA 747



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L       + + +   +  G  ++     + ++   +   
Sbjct: 789 FLKGTLKVSDEQMADISFNLLDHLGFSKKDIEAANIHVCGAMTLEGAPFLKNEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMANEATVEDCKNAYMLSWKLGLK 908

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 909 ANALYRDGSK 918


>gi|196248885|ref|ZP_03147585.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
 gi|196211761|gb|EDY06520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
          Length = 596

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 121/532 (22%), Positives = 213/532 (40%), Gaps = 68/532 (12%)

Query: 457 IDVEEFLDLRKNTGDDRRR------------THDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            D   F +      +++ R                N +  +   FM+ V  +  + L  P
Sbjct: 73  PDYGGFTEEIIKDAEEKLRTGGTYTVHNPDFLTGANISVCLTKEFMEAVENDDEYALRFP 132

Query: 505 DE---VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           D      +   +Y +++    +  E +     ++V+RKI A  LW+ +      +  P I
Sbjct: 133 DVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIRARELWKLINICATYSAEPGI 192

Query: 562 TFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
            F D  N  +  +  G  V ++N C E  L       +VCNL +INL           DY
Sbjct: 193 FFIDNANDMTNARAYGQKVVATNPCGEQPLAP----YSVCNLAAINLANMVDKERKVVDY 248

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL  T+   VR+ DNVID   + +E+ KK     R IGLG+MG    L      Y S E
Sbjct: 249 EKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIGLGVMGLADLLIYCEKEYGSEE 308

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             ++ DE  + I+  A  AS+ELA+E+G++    G   ++            ++R+    
Sbjct: 309 GNQLVDELFQTIATTAYRASIELAKEKGSFPFLVGETEEE----------TRQLREAFIN 358

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               +   +++++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G 
Sbjct: 359 TGYMKRMPEDIRQDILQYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFAYYRSGRLGK 418

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  V + +V E   +                   + E  P+ L     TA ++ P    +
Sbjct: 419 FIEVKADIVQEYLDK-------------------HPEADPNHLPHWFVTAMDLSPEAHAD 459

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS----V 911
                Q+W+D + S  +   +  + +++  +Y + W  G K  T Y   SR A       
Sbjct: 460 VQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLWRCGAKGGTVYVDGSRDAQVLTLKA 519

Query: 912 EKSTLK----------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           E++T++              K   V + D      S  +         C +C
Sbjct: 520 EENTVEEQLELIPEETEEQAKKRTVVLVDTIQDVRSTDVTIGSEIGNICPIC 571


>gi|14521806|ref|NP_127282.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus abyssi
            GE5]
 gi|5459026|emb|CAB50512.1| nrd inteins containing ribonucleotide reductase [Pyrococcus abyssi
            GE5]
          Length = 2122

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 169/348 (48%), Gaps = 17/348 (4%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
            S+   +         E   CNL SINL      ++     FD+D+ A  I+   + LDN 
Sbjct: 1672 SNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNS 1731

Query: 636  IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   +  E+++F+A 
Sbjct: 1732 IDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAY 1791

Query: 696  SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
              S+E A++RG +  ++ + + +G  P++                   LPWD+L + +K 
Sbjct: 1792 KYSIEAAKKRGTFPLYEKTGYPKGELPVEG----------FYHPEIWNLPWDKLVEEIKK 1841

Query: 756  IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             G+RN+      PT +++ I   S  I+P +  +Y KS   G+F  V+     ELK+R L
Sbjct: 1842 YGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKRRGL 1901

Query: 816  WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            + E ++  +  + GS+  +E IP+D++++  TA +I  +  + + +  Q W+  + S  +
Sbjct: 1902 YSEELLKKISDNYGSVQGLEEIPEDMRRVFVTALDIHWLDHLLAQANIQMWLTDSASKTI 1961

Query: 876  YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             + +E + + +   Y  A  +G K     R  S  SV+  +++G   +
Sbjct: 1962 NMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSL-SVQVYSVEGEKKR 2008



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 167/436 (38%), Gaps = 85/436 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++KN+ ++           
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKRI-----NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +            L    
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRI---------LNKKE 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            D     F+   L ++   A   L+   +  ++ E+ + +++ +S   +   L++  R  
Sbjct: 108 LDEIDKRFSINALRVL---ASRYLKRDENGNII-ESPRELFERVSILAVIPDLLYDERV- 162

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            +K+ NY +   R        E     ++K           L   +F R +   +   L 
Sbjct: 163 FDKDGNYKQDLKRV-------EYYLENFEKFDGKYSIGKYKLNKYHFERMVN--LYRELA 213

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            +  M   +    + L                             E  +           
Sbjct: 214 EKGKMKVSIDEFLSML-----------------------------ERGEF---------- 234

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
               + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I  A  +
Sbjct: 235 ---DKYEKEIEEYFKLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHD 291

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS--QGVIPFLKVANDTAVAVNQGGKRKG- 446
            AM+ K  G        + G    I    G+     +    +         ++   R G 
Sbjct: 292 VAMIQKMGG------GCIDGNAKIIFENEGEEHLTTMAEMYERYRHLGEFYDENYNRWGI 345

Query: 447 ---AVCAYLETWHIDV 459
              +V  Y++++  + 
Sbjct: 346 DVSSVPIYVKSFDPET 361



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 30/168 (17%)

Query: 420  KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
             + G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  ++          + 
Sbjct: 1159 SNSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIG-TNVLSNF 1217

Query: 480  NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
            N +  I + F + + +   + L +P                               V ++
Sbjct: 1218 NISVGIWEDFWEALKEGKKYPLINPRTGE---------------------------VVKE 1250

Query: 540  ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLC 585
            I    L+ ++  M +    P + F D  N R+  +    G + ++N C
Sbjct: 1251 IDPKTLFEELAYMAWAKADPGVIFFDIINRRNVLKEAKGGPIRATNPC 1298


>gi|126726388|ref|ZP_01742229.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126704251|gb|EBA03343.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 1236

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/572 (20%), Positives = 201/572 (35%), Gaps = 88/572 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+    D+L    GI       A L KY  G G +++ V
Sbjct: 179 YKTGVLTKSTSSYEHPQPHACFIQGCSDNLVNDGGIMDLWMREARLFKYGSGTGTNFSHV 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL- 465
           RG G  +    GKS G++ FLK+ +  A ++  G   R+ A    ++  H DV+EF++  
Sbjct: 239 RGNGEKLS-GGGKSSGLMDFLKIGDRAAGSIKSGGTTRRAAKMVIVDVDHPDVQEFINWK 297

Query: 466 ---------------------------------------RKNTGDDRRRTHDMNTANWIP 486
                                                       D  +          IP
Sbjct: 298 VIEEQKVASIVAGSKMHKEKLGEIFDAIRVWDGKIEDATDPKANDALKSAIRAAKKVAIP 357

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGKEFE-------------IAYENYE 526
           + ++ RV Q A        +T +  D  S+ +     +               +  +   
Sbjct: 358 ETYVNRVLQYARQGYTSIEFTTYDTDWDSEAYSSVSGQNSNNTVRVTDAFLDAVKNDADW 417

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +R + KV + ISA  LW ++    +    P I + D  N        G +  SN C+
Sbjct: 418 DLTNRTDGKVKKTISARELWEQIGHAAWACADPGIQYHDTINAWHTCPEDGEIRGSNPCS 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL  + + +FD        R     L+  + +     ++ 
Sbjct: 478 EYMFL----DDTACNLASMNLLTFYNDKKFDTAAYMHASRLWAITLEISVMMAQFPSKEI 533

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   I       +   + + S E+A+++G
Sbjct: 534 AQRSYETRTLGLGFANLGGLLMNMGYSYDSDEGRAICGALTAIMCGVSYATSAEMAKDQG 593

Query: 707 AYSSFK-----------------GSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +K                  S  D      +  + L A    +  M   +R  WDE
Sbjct: 594 PFEKYKVNEKHMLRVMRNHHRAVHSKTDGYEGLNMAPVPLDAANCPDQDMVDMARASWDE 653

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 654 ALALGEKHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSV 713

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
               +   +  + I ++  +    G +   PD
Sbjct: 714 PGALEAQGYSSSQIEEIISYAVGHGTLGNAPD 745



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 48/148 (32%), Gaps = 13/148 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + +  +      +N    + L+        +   +D      ++ N   + ++   I   
Sbjct: 787 FCRDVLGIPQEKLNDPGFDLLRSLGFTRAQIDAANDHVCGTMTLENAPFLKEEHMSIFDC 846

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A                I   +  Q ++  A S  + + ++ + +     Y  +W +GLK
Sbjct: 847 ANPCGKKGKRFLSVNSHITMMAAAQPFLSGAISKTINMPNDATIEDCQEAYEYSWSLGLK 906

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLN 924
               Y   S+ +  +  S ++  D    
Sbjct: 907 ANALYRDGSKLSQPLAASLVEDDDDAAE 934


>gi|257865281|ref|ZP_05644934.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871609|ref|ZP_05651262.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257799215|gb|EEV28267.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805773|gb|EEV34595.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 825

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/501 (24%), Positives = 208/501 (41%), Gaps = 54/501 (10%)

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL---YGKEFEIAYENYER 527
            +       N +  + + FM+ V  +  + L  PD  +        Y  ++    +  E 
Sbjct: 350 KESDFLTGANISVCLTEEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDVREW 409

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
            A   ++K +++I A  LW  +      +  P I F D  N  +     G  V ++N C 
Sbjct: 410 AAAGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCG 469

Query: 587 EITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E  L       AVCNL +INL  +A       D+ KL  T++TAVR  DNVID+  +  +
Sbjct: 470 EQPLTP----YAVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPYFFD 525

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           K ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E
Sbjct: 526 KNEQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKE 585

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G++    G           +      +R +       +     +++ V   G+RNS+ +
Sbjct: 586 KGSFPFLIG----------KNDQETQALRKKFIDTGYMKKMPAHIREGVLRFGIRNSHLL 635

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            +APT +   + GVS  ++P Y   Y +S   G F  +N+ +V+E               
Sbjct: 636 TVAPTGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIVDEYL------------- 682

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                 + + ER   +L     +A E+ P   +      Q+W+D + S  +   +  +  
Sbjct: 683 ------MDHPERTKAELPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGYTVS 736

Query: 884 KLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNA-------VPVTDPNSS 934
           ++  +YR  +  G K  T Y   SR +  +   TL+ V+ +L A       V V +P +S
Sbjct: 737 QVAKVYRDLYEGGAKGGTVYVDGSRDSQVL---TLEAVENELTAQVEPLSVVQVDEPVAS 793

Query: 935 THSLGIPSSCTSDT--ECEVC 953
                I    T +    C  C
Sbjct: 794 GEICPICHEGTIEEIGGCSTC 814



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 306 FLHINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLF 359
            +    S IE P   F      RVA G++  E+  ++R  E FY  + + + + +   L+
Sbjct: 108 LVKRRKSDIEKPLELFFEQVAHRVAKGISANESHDQERFFEAFYQQIVAQNLIPAGRVLY 167

Query: 360 NSGTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
            +GT       +CF+   + D   GI    QE   +    GG+G + + +R   + +HG 
Sbjct: 168 GAGTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGV 227

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           +G+S G + +L    +    V QGG R+GA    +  WH D+  F+  +    
Sbjct: 228 SGRSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFILSKIQNP 280


>gi|295399141|ref|ZP_06809123.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978607|gb|EFG54203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 591

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 192/445 (43%), Gaps = 42/445 (9%)

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRG 532
               N +  +   FM+ V ++  + L  PD      +   +Y +++    +  E +    
Sbjct: 99  LTGANISVCLTKEFMEAVEKDEEYELRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGY 158

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLN 591
            ++V+RKI A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 159 RVRVYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLA 218

Query: 592 SSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ KK 
Sbjct: 219 P----YSVCNLAAINLANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQ 274

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++ 
Sbjct: 275 ALGERRIGLGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFP 334

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                          +     ++R+        +   +++++ +   G+RNS+ + +APT
Sbjct: 335 ----------FLVGKTEEETQKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPT 384

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  V + +V E   +                
Sbjct: 385 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK---------------- 428

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
              + E  P++L     TA ++ P    +     Q+W+D + S  +   +  + +++  +
Sbjct: 429 ---HPEADPNNLPHWFVTAMDLSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKV 485

Query: 889 YRQAWLMGLK--TTYYLRSRSATSV 911
           Y + W  G K  T Y   SR A  +
Sbjct: 486 YERLWRGGAKGGTVYVDGSRDAQVL 510


>gi|312110256|ref|YP_003988572.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
 gi|311215357|gb|ADP73961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
          Length = 591

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 192/445 (43%), Gaps = 42/445 (9%)

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRG 532
               N +  +   FM+ V ++  + L  PD      +   +Y +++    +  E +    
Sbjct: 99  LTGANISVCLTKEFMEAVEKDEEYELRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGY 158

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLN 591
            ++V+RKI A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 159 RVRVYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLA 218

Query: 592 SSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ KK 
Sbjct: 219 P----YSVCNLAAINLANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQ 274

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++ 
Sbjct: 275 ALGERRIGLGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFP 334

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                          +     ++R+        +   +++++ +   G+RNS+ + +APT
Sbjct: 335 ----------FLVGKTEEETQKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPT 384

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  V + +V E   +                
Sbjct: 385 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK---------------- 428

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
              + E  P++L     TA ++ P    +     Q+W+D + S  +   +  + +++  +
Sbjct: 429 ---HPEADPNNLPHWFVTAMDLSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKV 485

Query: 889 YRQAWLMGLK--TTYYLRSRSATSV 911
           Y + W  G K  T Y   SR A  +
Sbjct: 486 YERLWRGGAKGGTVYVDGSRDAQVL 510


>gi|118431711|ref|NP_148354.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
 gi|116063033|dbj|BAA81072.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
          Length = 979

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/538 (24%), Positives = 206/538 (38%), Gaps = 119/538 (22%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F Y  +++L  RY +    G  +E P     RVA+G   +  + ++     Y LL  
Sbjct: 67  DFGFTYNAVRVLMARYMVKDEMGRFLETPSMVMRRVALG-FRERVDPDRL----YRLLVE 121

Query: 349 FHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             FM ++PTLFN         LS+C++T V DD+  I  A    A   K+ GG G  ++ 
Sbjct: 122 RRFMFNSPTLFNMFVDGARGTLSACYVTPVYDDMDSIMDAATVQAKTFKWGGGQGFSFSE 181

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE------ 460
           +R     + GT+G S G + F+++ +     V QGGKR+GA    +  WH D+       
Sbjct: 182 LRPRWDVVRGTSGYSSGPMSFMRLYDTVTELVKQGGKRRGANMGIMHVWHPDIYTPGFDP 241

Query: 461 -----------------EFLDLRKNTGDD------------------------------- 472
                             F  + +  GD+                               
Sbjct: 242 AVALRNSLPPQVQELIDAFSRIIRELGDEGYEVPGELVELVESLSRQGWWTIEDAGFIQA 301

Query: 473 ------RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-DEVSD---------------- 509
                      + N +    D FM+ V +   W + +P    SD                
Sbjct: 302 KKPPLQDANLTNFNISVGANDAFMQAVVEGGDWWMVNPRYTASDRAGIYKIHYSISKATG 361

Query: 510 ----------------------LHDLYGKEFEIAYENYERQAD-------RGEIKVFRKI 540
                                   D+  +    A E  E QA          +  V   +
Sbjct: 362 LGRLGTLIEKHPWLLENPYINLFEDVISEALPKALEMLEEQARKTGMPADPRQKNVHAWV 421

Query: 541 -SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
             A  +WR+++   +  G P + + D  N  SP   +G V+++N C+E TL         
Sbjct: 422 APAREIWREIVEAAWGGGDPGLVYFDNHNKWSPTPWLGAVNATNPCSEQTLYPFEP---- 477

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+++  + A  +FD ++ A+ +      +D VID+N H  E+   +N   R IGLG
Sbjct: 478 CNLGSLSVDKYVAGGRFDLERFANDVEFLTEAMDAVIDLNRHPDERQDTANKFTRKIGLG 537

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +MG   AL  L  PY S EAV      M  +   +   S E+    G   +F+  ++D
Sbjct: 538 IMGLADALAGLGYPYDSEEAVAFTTILMAGLEVFSWKRSWEMGARLGHAPAFECRMFD 595



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 29/193 (15%)

Query: 744 LPWDELKKRVKTIGM---RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             W  L++  + +G    RN+    IAPT TI+ + G S  I+P +  +Y +    G F 
Sbjct: 713 EAWRLLREYGRRLGAKAPRNTVTTTIAPTGTISILAGTSSGIEPYFALVYKRQVAVGTFL 772

Query: 801 VVNSFLVNELKQ--------RDLWDEAMISDLKYHDGSIGNIERIPDD------------ 840
            V S    +L +        RD+  E +  +++ H GS+     +  +            
Sbjct: 773 EVVSRFREDLLKAAEKHGVGRDV-LEIVYEEVRRHKGSLRWSLNVLAEKLDGRVDDGFLE 831

Query: 841 ----LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
               L + +AT+ +    + +      Q ++DQA S  + L    +   ++  Y  AWL 
Sbjct: 832 ELARLARKYATSMDFPLWYHLAHQIAAQLYVDQAISKTVNLPRTATPDDVEASYLAAWLG 891

Query: 896 GLKTTYYLRSRSA 908
           GLK     R  S 
Sbjct: 892 GLKGFTVYRDESK 904


>gi|319767468|ref|YP_004132969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
 gi|317112334|gb|ADU94826.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
          Length = 596

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/504 (23%), Positives = 205/504 (40%), Gaps = 62/504 (12%)

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADRG 532
               N +  +   FM+ V ++  + L  PD      +   +Y +++    +  E +    
Sbjct: 104 LTGANISVCLTKEFMEAVEKDEEYALRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGY 163

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLN 591
            ++V+RKI A  LW+ +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 164 RVRVYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLA 223

Query: 592 SSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ KK 
Sbjct: 224 P----YSVCNLAAINLANMVDKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQ 279

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG    L      Y S E  ++ DE    I+  A  AS+ELA+E+G++ 
Sbjct: 280 ALGERRIGLGVMGLADLLIYCEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFP 339

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              G   ++            ++R+        +   +++++ +   G+RNS+ + +APT
Sbjct: 340 FLVGETEEE----------TRKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPT 389

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +   + GVS  ++P +   Y +S   G F  V + +V E   +                
Sbjct: 390 GSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK---------------- 433

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
              + E  P+ L     TA ++ P    +     Q+W+D + S  +   +  + +++  +
Sbjct: 434 ---HPEADPNHLPPWFVTAMDLPPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKV 490

Query: 889 YRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDG-----------------KLNAVPVT 929
           Y + W  G K  T Y   SR A  +   TLK  +                     AV + 
Sbjct: 491 YERLWRCGAKGGTVYVDGSRDAQVL---TLKAEENRIEEQLELLPEELEEKETKRAVVLV 547

Query: 930 DPNSSTHSLGIPSSCTSDTECEVC 953
           D      +  +         C +C
Sbjct: 548 DTIQDVRATDVTIGSEVGNICPIC 571


>gi|83951851|ref|ZP_00960583.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
 gi|83836857|gb|EAP76154.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
          Length = 1208

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/677 (19%), Positives = 227/677 (33%), Gaps = 108/677 (15%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           PE+  R + +G       E+        LA    Y                 YF     +
Sbjct: 61  PEFLWRSVPDGEDVAKGGETSAKQVFDRLAGAWAYWG-----------WKGGYFTTEEDA 109

Query: 313 RIEMPQAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHFMC----STPTLFNSGTR 364
           R    +  FM  A  +A   + +            +  S  H+         T  +S   
Sbjct: 110 RAYFDEMRFML-ARQMAAPNSPQWFNTGLHWAYGIDGPSQGHYYVDHKSGKLTKSSSAYE 168

Query: 365 HPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V DDL G           A L KY  G G +++ +R  G  + G    S
Sbjct: 169 HPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGESLSGGGKSS 228

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT----------- 469
             ++ FLK+ +  A A+  G   R+ A     +  H D++EF++ +              
Sbjct: 229 G-LMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEFINWKVKEEQKVASIVAGS 287

Query: 470 -----------------------GDDRRRTHDMNTA------NWIPDLFMKRVTQ----- 495
                                    D ++   + TA        IP+ ++KRV       
Sbjct: 288 KMHEMKLNDIFSAIRAWDGSSEDAVDPKKNEQLKTAIRGAKQVQIPETYVKRVLDYAKQG 347

Query: 496 ---------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ------ADRGEIKVFRKI 540
                    +  W   +   VS  +         A+    +        +R +  V + I
Sbjct: 348 YESIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLKAVKDDADWALINRTDGSVAKTI 407

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  +    +    P I F D  N        G +  SN C+E        +   C
Sbjct: 408 KARDLWEDVGHAAWACADPGIQFHDTVNAWHTCPEDGEIRGSNPCSEYMFL----DDTAC 463

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NLL  F N QFD D      R     L+  + +     ++  + ++  R +GLG 
Sbjct: 464 NLASMNLLTFFKNGQFDADAYVHATRLWTMTLEISVLMAQFPSKEIAQLSYEFRTLGLGY 523

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-------- 712
                 L  + + Y S E   +       ++  A + S E+A E G ++ ++        
Sbjct: 524 ANIGGLLMNMGLGYDSDEGRAMCGALTAVMTGVAYATSAEMAGELGPFAGYERNAAHMLR 583

Query: 713 ----------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                     G+        +  + L      +  + + +   WDE     +  G RN+ 
Sbjct: 584 VIRNHRNAAYGASEGYEALAVKPVPLDLANCPDQTLVKLAMASWDEALALGEKHGYRNAQ 643

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT TI  +    +  I+P +  +  K    G +  + +  V    ++  +  A I
Sbjct: 644 ATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEKLGYGSAEI 703

Query: 822 SDLKYHDGSIGNIERIP 838
            ++  +    G I   P
Sbjct: 704 EEIVSYAVGHGTIGNAP 720



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 13/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + K+ +      +N    + L         +   +D      ++     +  +   I   
Sbjct: 763 FCKNVLGIPAAKLNDPTFDLLAHLGYSKADVDAANDHVCGTMTLEGAPHLKTEHYHIFDC 822

Query: 848 AFEIDPMW--------LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A                I   +  Q +I  A S  + + ++ + +     Y  +W +G+K
Sbjct: 823 ANPCGKKGKRYLGVNSHITMMAAAQSFISGAISKTINMANDATIEDCQKAYELSWSLGVK 882

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
               Y   S+ +  +  S ++  D          P      L 
Sbjct: 883 ANALYRDGSKLSQPLAASLVEDDDEAQEIFESGTPQEKAAVLA 925


>gi|315924390|ref|ZP_07920612.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622269|gb|EFV02228.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 984

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 124/659 (18%), Positives = 231/659 (35%), Gaps = 68/659 (10%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ F   +     +     E  A+ +Y+                      Q S+CF+ +
Sbjct: 132 SPQWFNTGIERNYHIGA---ESDALYYYD------PALKKVVESRDRYTRTQASACFILS 182

Query: 376 VPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + D L     I         L K   G+G +++P+RG    +  + GKS G++ FL+  +
Sbjct: 183 IKDQLLGHRSISDHYVSETKLFKGGSGVGTNFSPLRGENEALS-SGGKSSGMMSFLQGLD 241

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFM 490
             A A+  G   R+ A    ++  H ++E++++ +    +  R    M     +  + + 
Sbjct: 242 RNAGAIKSGGTTRRAAKMVIVDVDHPEIEDYINWKVKEEEKVRALGKMGYDMGMDGEAYQ 301

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               QNA  ++    E  D         +   E       R + KV RKI    LW ++ 
Sbjct: 302 TVAGQNANNSVRVDREFMDKV----MHLDEDPEATITLTGRKDHKVDRKIKVSKLWDEIN 357

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCTEITLNSSSEETAVCN 601
              +    P + F +  N                   ++++N C+E        +   CN
Sbjct: 358 EAAWACADPGLQFDNIFNNWHTCPAGEDGDVGAKHNRINATNPCSEYAFL----DDTACN 413

Query: 602 LGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           L SIN+   F     + D ++ +        VL+  I       E   + ++  R  GLG
Sbjct: 414 LASINIFRFFDPKTKKIDIERFSHLAGLIQLVLEASIYWGQFPTEDVAEKSYKFRTTGLG 473

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-GSLWDQ 718
           +    S +  L  PY S EA  +       ++ H+   S  +A + GA+  +K    +  
Sbjct: 474 IANTASLILALGYPYDSDEARNLTAALAGLMTGHSYFVSALMASKVGAFECYKINEPYMM 533

Query: 719 GVF------------PIDSIGLLAEVRDELAMNRTS--------RLPWDELKKRVKTIGM 758
            V               + +     + D   + R          +  W E     +  G 
Sbjct: 534 RVMRNHARIAGTLTDAFEGLDYDPYIIDHPILKRMGFKNLSMRIKDAWQEALDYGEVYGY 593

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT TI+      + SI+P Y ++  K  + G    + + ++    +   + 
Sbjct: 594 RNAQVSVIAPTGTISFAMDCGATSIEPFYSHVVFKKLVGGGSIEIVNPVMEMALKNLGYT 653

Query: 818 EAMISDLKYH------DGS--IGNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKW 866
           +  I D+  +      +G      +E  P    +   I  TA  I P   +   S     
Sbjct: 654 KPQIQDVMAYMLEKDENGMTLHQGLEDAPHIKKEHLPIFDTANTIRPEGHVLMVSSITPM 713

Query: 867 IDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           I  + S  +   +  + + +  I+  A+  G K     R     +   S+     G  +
Sbjct: 714 ISGSVSKTVNLPNAATVQDIADIHLLAYRTGAKAIATYRDGCKAAQPLSSGSDSQGDRD 772


>gi|170746750|ref|YP_001753010.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653272|gb|ACB22327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1243

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 205/572 (35%), Gaps = 90/572 (15%)

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVR 408
                T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R
Sbjct: 180 QTGVLTKSASAYEHPQPHACFIQSVQDDLVNDGGIMDLWVREARLFKYGSGTGSNFSMLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
                + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H D+E F+D + 
Sbjct: 240 SENEKLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWKV 298

Query: 468 NTGDDR----------------------------------------RRTHDMNTANWIPD 487
                                                         +R         +PD
Sbjct: 299 KEEQKVAALVTGSKVVSKHLTLVMKACTQCEAEGDACFDSERNPALKREIKAARRASVPD 358

Query: 488 LFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ER 527
            ++KRV Q A        + ++  D  S+ +                +F  A E     +
Sbjct: 359 SYIKRVVQFARQGFTKIEFPVYDTDWDSEAYLTVAGQNSNNSVSLTDDFLRAVEADADWQ 418

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R   KV + + A  LW ++    + +  P + F    N        G + +SN C+E
Sbjct: 419 LTARTTGKVTKTLRARDLWERIGEAAWASADPGLHFNTTMNDWHTCPAGGRIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S NLL  +     +FD +      R    VL+  + +     ++
Sbjct: 479 YMFL----DDTACNLASANLLTMYDRETKRFDAEAFEHLNRLWTVVLEISVMMAQFPSKE 534

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG       L  + +PY S     +A      ++  A + S E+A E 
Sbjct: 535 IAELSYRYRTLGLGYANIGGLLMTMGLPYDSDAGRALAGALTAIMTGVAYATSAEMASEL 594

Query: 706 GAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           G + +++                  G         +  + L      +  +   +R  WD
Sbjct: 595 GTFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLNVAPVALDHANIPQADLGDHARAAWD 654

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
              K  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  
Sbjct: 655 RALKLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQA 714

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
             +  +   + E+ I++++ +    G++ + P
Sbjct: 715 APDALRALGYRESEIAEIEAYAVGHGSMGQAP 746



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+ +  
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSKLSQP 922

Query: 911 VEKSTLKGVDGKLNA 925
           +  + +   D + + 
Sbjct: 923 LNSALISDDDDEADE 937


>gi|258622933|ref|ZP_05717949.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584872|gb|EEW09605.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 381

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 60/396 (15%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
             KI+A  L++ +  + FE+G+P++ F+D  N  +     G +  SNLC+EI   S + +
Sbjct: 9   KTKINARELFQTIAEIQFESGYPYLMFEDTVNRAN--PIAGRITMSNLCSEILQVSEASQ 66

Query: 597 ------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTI 643
                          CNLGS+N+         D   L  ++  AVR L  V +++   ++
Sbjct: 67  FNDDLSYQHLGTDISCNLGSLNIA-----KTMDGQALGQSVEIAVRALTAVSEMSQIDSV 121

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
              +K N    AIGLG M     L    I Y S E V+  +     I+FH + AS ++A+
Sbjct: 122 PSVRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGVDFTNCYFAAIAFHCLRASNQIAR 181

Query: 704 E-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
           E +  +  F+ S +  G +    +         ++  + +  A+   ++  W +LK+ V 
Sbjct: 182 EKQQTFHDFERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVM 241

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ N N  A+ PT +I+ I   + SI P    + ++                      
Sbjct: 242 RDGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRK--------------------- 280

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
              E  +  + Y          + +D    +  A+EI P  +I++ +   + +DQ  SL 
Sbjct: 281 ---EGQVGRVYYPA------PYMTNDNLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLT 331

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           L+     + + ++     AW  G+KT YY+R R   
Sbjct: 332 LFFPASATTRDINKAQIYAWKKGIKTLYYVRLRQTA 367


>gi|163850534|ref|YP_001638577.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium extorquens PA1]
 gi|163662139|gb|ABY29506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium extorquens PA1]
          Length = 1243

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/600 (20%), Positives = 217/600 (36%), Gaps = 93/600 (15%)

Query: 348 SFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 234 NFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEN 292

Query: 462 FLDLRKNTGDDR----------------------------------------RRTHDMNT 481
           F+D +                                               +R      
Sbjct: 293 FIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIKAAR 352

Query: 482 ANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +PD ++KRV Q A        + ++  D  S+ +                EF  A E
Sbjct: 353 KAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLRAVE 412

Query: 524 N--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R   KV +   A  LW K+    + +  P + F    N        G + +
Sbjct: 413 ADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGRIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S NLL  +   +  FD +      R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISVMMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A + S 
Sbjct: 529 QFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E+A E G + ++                   G +       +  + L      +  +   
Sbjct: 589 EMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADIGAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 ARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFEIDPMWLIES 859
            + +  V +  +   + E+ I++++ +    G++ + P      + A  F  D +  +E+
Sbjct: 709 KIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIAAVEA 768



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIHMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|240137599|ref|YP_002962070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
 gi|240007567|gb|ACS38793.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
          Length = 1243

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/600 (20%), Positives = 217/600 (36%), Gaps = 93/600 (15%)

Query: 348 SFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 234 NFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEN 292

Query: 462 FLDLRKNTGDDR----------------------------------------RRTHDMNT 481
           F+D +                                               +R      
Sbjct: 293 FIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIKAAR 352

Query: 482 ANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +PD ++KRV Q A        + ++  D  S+ +                EF  A E
Sbjct: 353 KAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLRAVE 412

Query: 524 N--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R   KV +   A  LW K+    + +  P + F    N        G + +
Sbjct: 413 ADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGRIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S NLL  +   +  FD +      R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISVMMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A + S 
Sbjct: 529 QFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E+A E G + ++                   G +       +  + L      +  +   
Sbjct: 589 EMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADIGAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 ARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFEIDPMWLIES 859
            + +  V +  +   + E+ I++++ +    G++ + P      + A  F  D +  +E+
Sbjct: 709 KIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIAAVEA 768



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIHMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|254560071|ref|YP_003067166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
 gi|254267349|emb|CAX23181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
          Length = 1243

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 123/600 (20%), Positives = 217/600 (36%), Gaps = 93/600 (15%)

Query: 348 SFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 234 NFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEN 292

Query: 462 FLDLRKNTGDDR----------------------------------------RRTHDMNT 481
           F+D +                                               +R      
Sbjct: 293 FIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIKAAR 352

Query: 482 ANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +PD ++KRV Q A        + ++  D  S+ +                EF  A E
Sbjct: 353 KAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLRAVE 412

Query: 524 N--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R   KV +   A  LW K+    + +  P + F    N        G + +
Sbjct: 413 ADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGRIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S NLL  +   +  FD +      R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISVMMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A + S 
Sbjct: 529 QFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E+A E G + ++                   G +       +  + L      +  +   
Sbjct: 589 EMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADIGVH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 ARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFEIDPMWLIES 859
            + +  V +  +   + E+ I++++ +    G++ + P      + A  F  D +  +E+
Sbjct: 709 KIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPGSLRAKGFTDDKIAAVEA 768



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIHMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|332158632|ref|YP_004423911.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
 gi|331034095|gb|AEC51907.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
          Length = 1703

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 172/354 (48%), Gaps = 21/354 (5%)

Query: 571  SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625
            +   ++     S+ C E  L     E   CNL SINL      ++     FD+D+ A  I
Sbjct: 1246 NHHMYISNGFMSHNCGEEPLY----EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVI 1301

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   +
Sbjct: 1302 QKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRK 1361

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
              E+++F+A   SVE A++RG +  +  + + +G  P++                   LP
Sbjct: 1362 VTEYLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVEG----------FYHPEIWNLP 1411

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            WD+L + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F  V+  
Sbjct: 1412 WDKLVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDPV 1471

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
               ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I  +  I + +  Q 
Sbjct: 1472 FEEELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQM 1531

Query: 866  WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            W+  + S  + + ++ + + +   Y  A  +G K     R  S  SV+  +++G
Sbjct: 1532 WLTDSASKTINMPNDATVEDVKAAYLIARFLGCKGVTVYRDGSL-SVQVYSVEG 1584



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 163/397 (41%), Gaps = 85/397 (21%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V   G     ++ +++KN+ ++           
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV---GVRDERKLDEVVKNIVKRI-----NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKE--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                       ++            V++  VL+  Y          D    +I S R L
Sbjct: 108 ---------LDEIDKRFS--------VNALRVLASRYLK-------RDENGNIIESPREL 143

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E+    A +                               LY E    + +EG   + L
Sbjct: 144 FERVAILAVI----------------------------PDLLYDERV--FDKEGNYKQDL 173

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM--G 327
                     YL N  K++  ++   +G   L   +F  +     E+ +   M+V++   
Sbjct: 174 KRVEY-----YLENFEKFDGKYS---IGKYKLNKYHFERMVNLYRELAEKGKMKVSIDEF 225

Query: 328 LALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           L++ E     + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LSMLERGEFDKYEKEIDEYFRLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
             A  + AM+ K  GG G +++ +R  G  +  T G 
Sbjct: 286 MKAAHDVAMIQKMGGGTGINFSKLRPEGDLVGTTTGA 322



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 86/226 (38%), Gaps = 41/226 (18%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYS-------GGLGND-WTPVRGLGAHIHGTNG---KS 421
           +  + D+L      ++  +ML+K           LG      ++  G H+   NG    +
Sbjct: 701 ILELKDELGLDEEEIKYFSMLSKLYPVRISKIELLGVQKVYDIQVEGVHLLTGNGIYTSN 760

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  ++          + N 
Sbjct: 761 SGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIG-TNVLSNFNI 819

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I + F + + +   + L +P                               V +++ 
Sbjct: 820 SVGIWEDFWEALKEGKKYPLINPRTGE---------------------------VVKEVD 852

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLC 585
              L+ ++  M +    P + F D  N R+  +    G + ++N C
Sbjct: 853 PKTLFEELAYMAWAKADPGVIFFDVINRRNVLKKAKGGPIRATNPC 898


>gi|154248593|ref|YP_001419551.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthobacter
           autotrophicus Py2]
 gi|154162678|gb|ABS69894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Xanthobacter autotrophicus Py2]
          Length = 1241

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 130/632 (20%), Positives = 223/632 (35%), Gaps = 100/632 (15%)

Query: 294 EYLGLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
                Q  YD  RY L +  +    PQ F      GL             FY    S   
Sbjct: 129 TEADAQAFYDEHRYMLALQMAAPNSPQWFN----TGLFWAYGIDGPGQGHFYVDHESGEL 184

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVR 408
           + ST     S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +R
Sbjct: 185 LAST-----SAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
           G G  +    G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++ + 
Sbjct: 240 GEGERLS-GGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYVNWKV 298

Query: 468 NTGDDR----------------------------------------RRTHDMNTANWIPD 487
                                                         +R         + D
Sbjct: 299 IEEQKVAALVTGSKLNAKHLKAVLKACVNCEGEGDSCFEPEKNPALKREIKAARKAGVAD 358

Query: 488 LFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE--NYER 527
             ++RV Q       +   +++  D   + +                +F  A E      
Sbjct: 359 AAIRRVIQYARQGYKDIEVSIYDTDWDGEAYITVAGQNSNNSVRVTDDFLRAVEADADWN 418

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R + KV + + A  LW K+    +    P I F    N        G + +SN C+E
Sbjct: 419 LIRRTDGKVAKTVKARELWEKIGAAAWHCADPGIQFHTTVNDWHTCPAAGEIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   +   CNL S+NLL    A  +FD +     +R    VL+  + +      + 
Sbjct: 479 YMFL----DDTACNLASLNLLQFRDAEKRFDVESYEHAVRLWTVVLEISVLMAQFPSRRI 534

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    IPY SP+   I       ++  + + S E+A E G
Sbjct: 535 AELSYEYRTLGLGYANIGGLLMSSGIPYDSPQGRAIGGALSAIMTGVSYATSAEMASELG 594

Query: 707 AYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + ++                   G         I  + L      +  +   +   WD+
Sbjct: 595 PFPAYSANAQSMLRVIRNHRRAAHGLKDGYEGLSIAPVPLDHVSCPDTRLVAHATAAWDK 654

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 655 ALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 714

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E  +   + EA I++++ +    G++ + P 
Sbjct: 715 PEALRTLGYSEAEIAEMEAYAVGHGSLAQAPA 746



 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ S +     Y  +W + LK    Y   S+
Sbjct: 862 ESHIRMMAAAQPFITGAISKTINMPNDASVEDCKAAYLLSWRLALKANALYRDGSK 917


>gi|327409754|ref|YP_004347174.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
 gi|326784928|gb|AEA07062.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
          Length = 1027

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 205/439 (46%), Gaps = 36/439 (8%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E  +  +            P+YA +  R  + +LR E+    +    ++        Y E
Sbjct: 36  EDKILKSFSEVCVFKCYMHPDYAVLAGRAEILRLR-EITPEKFSDVVRSNKGVFDPSYTE 94

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--- 311
           +  +                  +   L + +  ERD  F+++ +  L   Y +   G   
Sbjct: 95  FVLK------------------NAEKLNSFIVEERDMKFDWMAVSTLEKSYLVKRKGYDG 136

Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
                E PQ  ++RVA  L + + +  K   ++YN LS   F  ++PTLFN+G +  +LS
Sbjct: 137 NLHLNERPQQLYLRVATFLCMPDMKNIK---KYYNCLSKGKFTMASPTLFNAGLKKFKLS 193

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  VPD L  +     + A ++  SGG+G   TPVR       G  G+S G + FL+
Sbjct: 194 SCFLGIVPDSLNKMAQVWADIAAISSGSGGVGYSVTPVRHSD---IGGLGQSSGAVSFLR 250

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V N     V+Q G+RKG+   +L  WH+D+ +F+D +K  GDD  R  ++  A W  DLF
Sbjct: 251 VPNAVLGYVDQAGRRKGSGTFFLACWHVDIFDFVDAKKPGGDDLMRAREIFYAIWTSDLF 310

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  N  W+LF P+E   L D+YG EFE  YE YE++      +  + + A  LW  +
Sbjct: 311 MKRVKDNGDWSLFCPNEAPGLDDVYGSEFETLYERYEKEG-----RAKKVVKAQELWHHI 365

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L    E G P+I +KD    +S Q++ G+ HS NLC        ++E     + S+    
Sbjct: 366 LVAQVEVGMPFIAYKDAICRKSNQKNFGMPHSLNLCVAGDTRILTKEKGQIEIESVVDEN 425

Query: 610 HFANNQFDYDKLASTIRTA 628
               N  ++ +    ++TA
Sbjct: 426 VHVWNGEEWSE-TKIVKTA 443



 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 173/392 (44%), Gaps = 40/392 (10%)

Query: 560  WITFKDPCNIRSPQQHVGVVHSS--NLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
                 D    +  ++  G+        C EI  N+S +E A CNL SI L  +       
Sbjct: 619  GRQNVDTFCFKEEKKGKGMFEGLLLGNCMEICQNTSEDEIASCNLASICLPEYVDKKTGA 678

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            ++  KL    R  +R+L+NV+D NC+   I K K++N  HR IGLG+ G      ++ + 
Sbjct: 679  YNLKKLWRNARKVIRILNNVVDRNCYPPEIPKIKRTNLRHRPIGLGVQGLADVFAIMGLS 738

Query: 674  YASPEAVEIADESMEFISFHAISASVELAQER-------GAYSSFKGSLWDQGVFPIDSI 726
            +   EA  +  +  E I   AI+ S ++++ER         Y +F GS   +G F  D  
Sbjct: 739  WLDEEAKMLNRQIFETIYHAAITESRKMSKERARFGCAVPYYETFPGSPLSKGFFSHDLW 798

Query: 727  GL------------------LAEVRDELAMNRTS-RLPWDELKKRVKTIGMRNSNCMAIA 767
             +                  + E R    +  +   + WD  +++ +  G+ NS  +A+ 
Sbjct: 799  DVENIHKKTGIPFDDITIEQVKEHRKARGIPESYCGIDWDSERRKTQRDGVYNSFMIALM 858

Query: 768  PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            PTA+ A I   +++ +P    +  ++ +SG F +VN   V+++ +  +W++   +     
Sbjct: 859  PTASTAQILRNNEAFEPFTNIIGKRTVLSGTFAIVNKHFVDDMIELGIWNKKNRAICLTG 918

Query: 828  DGSIGNI-------ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
             GS+  I           + +K+ +  AFE+    + E    R +++DQ  S N ++  P
Sbjct: 919  KGSVQGIVCEDPSLADAVEKIKRKYLNAFELSQKRVCELGIDRSRYVDQTSSHNCFMKNP 978

Query: 881  SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
            + +KL   +   W  G KT  YYLR+      
Sbjct: 979  TYQKLTSYHFYQWEEGAKTGMYYLRTSPPDVA 1010


>gi|18976812|ref|NP_578169.1| ribonucleotide-diphosphate reductase subunit alpha [Pyrococcus
            furiosus DSM 3638]
 gi|1688292|gb|AAB36947.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
 gi|18892410|gb|AAL80564.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
          Length = 1740

 Score =  277 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 169/351 (48%), Gaps = 17/351 (4%)

Query: 574  QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTA 628
             +  +  S+   +         E   CNL SINL      ++     FD+D+ A  I+  
Sbjct: 1282 PNYHMYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKV 1341

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   +  E
Sbjct: 1342 AKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTE 1401

Query: 689  FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +++F+A   SVE A++RG +  +  + + +G  P++                   LPWD+
Sbjct: 1402 YLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVEG----------FYHPEIWNLPWDK 1451

Query: 749  LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
            L + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F  V+     
Sbjct: 1452 LVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEFYYVDPVFEE 1511

Query: 809  ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I  +  I + +  Q W+ 
Sbjct: 1512 ELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQASIQMWLT 1571

Query: 869  QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + S  + + +E + + +   Y  A  +G K     R  S  SV+  +++G
Sbjct: 1572 DSASKTINMINEATVEDVKAAYLIARFLGCKGVTVYRDGSL-SVQVYSVEG 1621



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 148/376 (39%), Gaps = 85/376 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V  +      ++ +++K++ ++           
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEVGIRD---EKKLDEVVKSIVQRI-----NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +                 
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEK----------------- 99

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                        + I+ +    L ++  +  ++         L + +    ++ S R L
Sbjct: 100 -------------KRILNK--KELDEIDKRFSINALRVLASRYLKKDE-NGNIVESPREL 143

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            E+    A +                                  +    Y ++  +    
Sbjct: 144 FERVAILAVIPDLLY------------------------DERVFDKNGNYSQDLKRVEYY 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM--G 327
            E   +FD  Y               +G   L   +F  +     E+ +   M+V++   
Sbjct: 180 LEHFEEFDRKYS--------------IGKYKLNKYHFERMVNLYKELAEQGKMKVSIDEF 225

Query: 328 LALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           LA+ E     E EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LAMLEKGEFNEYEKEINEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGG 399
             A  + AM+ K  GG
Sbjct: 286 MKAAHDVAMIQKMGGG 301



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 30/190 (15%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
              G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE WH 
Sbjct: 754 HNTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHP 813

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+E+F+  ++          + N +  I + F + + +   + L +P             
Sbjct: 814 DIEKFIHAKEKNIG-TNVLSNFNISVGIWEDFWEALKEGKKYPLINPRTGE--------- 863

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576
                             V +++    L+ ++  M +    P + F D  N R+  +   
Sbjct: 864 ------------------VVKEVDPKTLFEELAYMAWAKADPGVIFFDVINRRNVLKKAK 905

Query: 577 -GVVHSSNLC 585
            G + ++N C
Sbjct: 906 GGPIRATNPC 915


>gi|218529231|ref|YP_002420047.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium chloromethanicum CM4]
 gi|218521534|gb|ACK82119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium chloromethanicum CM4]
          Length = 1243

 Score =  277 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/600 (20%), Positives = 217/600 (36%), Gaps = 93/600 (15%)

Query: 348 SFHFMCSTPTLFNSGT--RHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    T  L  S T   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 234 NFSMLRGENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEN 292

Query: 462 FLDLRKNTGDDR----------------------------------------RRTHDMNT 481
           F+D +                                               +R      
Sbjct: 293 FIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDACFDPERNPALKREIKAAR 352

Query: 482 ANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +PD ++KRV Q A        + ++  D  S+ +                EF  A E
Sbjct: 353 KAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQNSNNSVSLTDEFLRAVE 412

Query: 524 N--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R   KV +   A  LW K+    + +  P + F    N        G + +
Sbjct: 413 ADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPEGGRIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S NLL  +   +  FD +      R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASANLLTMYDRQSKHFDVEAFEHLNRLWTVVLEISVMMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A + S 
Sbjct: 529 QFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRALAGALTAIMTGVAYATSA 588

Query: 700 ELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E+A E G + ++                   G +       +  + L      +  +   
Sbjct: 589 EMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVSPVPLDHANIPQADIGAH 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 ARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIES 859
            + +    +  +   + EA I++++ +    G++ + P  +   + A  F  D +  +E+
Sbjct: 709 KIINQAAPDALRALGYREAEIAEIEAYAVGHGSMGQAPAINPGSLRAKGFTDDKIAAVEA 768



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIHMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|241116846|ref|XP_002401636.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
 gi|215493180|gb|EEC02821.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
          Length = 382

 Score =  277 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/429 (30%), Positives = 203/429 (47%), Gaps = 59/429 (13%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNS 592
           V  K+ A  LW K+LT   ETG P++ F D  N       ++    V  SNLC+EITL +
Sbjct: 3   VVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPT 62

Query: 593 SSEE-----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             +      TAVC L S+NL  ++   + D + + S +     VL++ I+    T+ +AK
Sbjct: 63  GIDHLGKSRTAVCCLSSLNL-EYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAK 121

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            S    R++GLG+MGF S L +  +P  S        +  E+IS  A  AS+E+ +E+G 
Sbjct: 122 YSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEKGV 181

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
                                        A++  S                R SN  AIA
Sbjct: 182 CPD--------------------------ALDAGSNE--------------RFSNKTAIA 201

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S +  
Sbjct: 202 PTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIAT 261

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
           H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L    S K L
Sbjct: 262 HEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKYL 321

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           + I+ +AW  G+K+ YY RS S    +K +        + VP  D           +   
Sbjct: 322 NNIHFKAWKKGVKSLYYCRSTSIQRADKVS--------HDVPKADFKDLEKQNDKLAEAG 373

Query: 946 SDTECEVCQ 954
           +  EC  CQ
Sbjct: 374 NYEECLACQ 382


>gi|304321238|ref|YP_003854881.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303300140|gb|ADM09739.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 1196

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 150/709 (21%), Positives = 250/709 (35%), Gaps = 155/709 (21%)

Query: 296 LGLQILYDRYFLHIN-----------GSRIEM----------------PQAFFMRVAM-- 326
           + + IL  +Y    N               E+                 +A F R+A   
Sbjct: 42  MAVDILAQKYLRRDNVPSATIRCKAGDEPSELTPRQAAPGSGVGHESDAEAVFDRLAGAW 101

Query: 327 -------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG----------------- 362
                  G+     +      E   ++++     ++P  FN+G                 
Sbjct: 102 AFHGWQQGIFDDADDAIAFRDELCAMMATQRAAPNSPQWFNTGLHWAYGIAADGSGHFRY 161

Query: 363 -------------TRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTP 406
                          +PQ  +CF+ +V D L    GIF      A L KY  G G++++ 
Sbjct: 162 DPSVEKIVEVDNVYAYPQPHACFIQSVSDSLVGENGIFDLWSREARLFKYGSGSGSNFSA 221

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDL 465
           +RG    +    GKS G+I FLKV +  A A+  GG  R+ A    L+  H D+E F+D 
Sbjct: 222 IRGEDEPL-AGGGKSSGLISFLKVGDTAAGAIKSGGITRRAAKMVVLDIDHPDIENFIDW 280

Query: 466 RKNT---------------------------GDDR-----------RRTHDMNTANWIPD 487
           +                              GD+            RR       + +PD
Sbjct: 281 KVKEEQKVAALVTGSLVTKRHVEAMFAAIKRGDEDDRLDPTRNEILRRVMKAARRDGVPD 340

Query: 488 LFMKRVTQNA--------------GWTLFSPDEVSDLHDLYG----KEFEIAYENYERQA 529
             + R    A              GW   +   VS  +         EF +A ++ ++  
Sbjct: 341 GIIGRALSLAASGRTEMPLDVYTVGWDDEAYRTVSGQNANNSIRLTGEFLVAVDDDQQWP 400

Query: 530 --DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R +  V + +SA ALW K+    + +  P + F D  N        G + +SN C+E
Sbjct: 401 LTRRTDGGVHKSVSARALWEKIGEAAWASADPGLQFHDTINDWHTCPMDGDIEASNPCSE 460

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +       CNL SINLLA    + + D D L  TIR    VL+  + +  +   + 
Sbjct: 461 YMFLN----DTACNLASINLLAFLQEDGELDLDGLIHTIRLWTIVLEISVGMASYPDARI 516

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG       L    +PY S      A      ++  A   S +LA   G
Sbjct: 517 AQRSYDYRTLGLGFANLGGLLMSAALPYDSDRGRAAAGALSALMTAIAYKTSADLAARLG 576

Query: 707 AYSSFKGSLWD--------QGVFP---IDSIGLLAEVRDE-----LAMNRTSRLPWDELK 750
            +  F  +           +        D + +     DE       +   +   WDE  
Sbjct: 577 PFPRFDANKEAVLRVMRNHRAALTGDDFDDLSVTPPRFDEGAVPFAGLVAAASSAWDEAI 636

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + +  G+RN+   AIAPT TI  +    +  I+P +  +  K    G    + +  V  
Sbjct: 637 SKAERSGVRNAQVTAIAPTGTIGLVMDCDTTGIEPDFALVKFKQLAGGGTVRLINQSVPR 696

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIP----DDLKKIHATAFEIDPM 854
              R  + +  I ++K      G+++  P    DDL++   +  EID +
Sbjct: 697 ALARLGYTDQQIREIKAFAVGHGSLDHAPGVSFDDLRREGFSDREIDKL 745



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           +++  +  +   ++      L++    DE +     +  G+  +     +  +   I   
Sbjct: 768 FLRGTLHLNDAQLDQSGYALLRELGFSDEDIHRANLFCCGTMTVEGAPHLQPEHYAIFDC 827

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I    S  +      + +     YR A+  GLK
Sbjct: 828 ATQCGRTGTRSLSVAAHIDMMAACQPFISGGISKTVNLPHRATVEDCVKTYRAAYHRGLK 887

Query: 899 TTYYLRSRSATSVEKSTL 916
           +    R  S  S   + +
Sbjct: 888 SISLYRDGSKLSQPLTGV 905


>gi|188580303|ref|YP_001923748.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium populi BJ001]
 gi|179343801|gb|ACB79213.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium populi BJ001]
          Length = 1243

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/603 (19%), Positives = 215/603 (35%), Gaps = 95/603 (15%)

Query: 347 SSFHFMC----STPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGG 399
           S  HF C       T   +   HPQ  +CF+ +V DDL    GI       A L KY  G
Sbjct: 171 SQGHFYCDPKTGALTKSATAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSG 230

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHID 458
            G++++ +R     + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H D
Sbjct: 231 TGSNFSMLRAENERLGGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPD 289

Query: 459 VEEFLDLRKNTGDDR----------------------------------------RRTHD 478
           +E F+D +                                               +R   
Sbjct: 290 IEAFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACIQCEAEGDACFDAERNPALKREIK 349

Query: 479 MNTANWIPDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEI 520
                 +PD ++KRV Q A        + ++  D  S+ +                 F  
Sbjct: 350 AARKAMVPDAYIKRVVQFARQGFTKIEFPVYDTDWDSEAYLTVAGQNSNNSVSLTDTFLR 409

Query: 521 AYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           A E         R   KV + + A  LW K+    + +  P + F    N        G 
Sbjct: 410 AVEADGDWSLTARTTGKVTKTLKARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPTGGR 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVI 636
           + +SN C+E        +   CNL S NLL  +      FD +      R    VL+  +
Sbjct: 470 IRASNPCSEYMFL----DDTACNLASANLLTMYDRQAKHFDVEAFEHLNRLWTVVLEISV 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  + ++ +R +GLG       L  + +PY S +   +A      ++  A +
Sbjct: 526 MMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDQGRALAGALTAIMTGVAYA 585

Query: 697 ASVELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAM 738
            S E+A E G + ++                   G         +  + L      +  +
Sbjct: 586 TSAEMAAELGTFEAYPENADHMLRVIRNHRRAAHGEATGYEGLNVAPVPLDHANIPQGDI 645

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
              +R  WD      +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 646 GAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 705

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWL 856
            +  + +  V +  +   + E+ I++++ +    G++ + P  +   + A  F  D +  
Sbjct: 706 GYFKIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAINPGSLRAKGFSDDKIAA 765

Query: 857 IES 859
           +E+
Sbjct: 766 VEA 768



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + ++ + +     Y  +W + LK    Y   S+
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|56697002|ref|YP_167364.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria
           pomeroyi DSS-3]
 gi|56678739|gb|AAV95405.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria pomeroyi DSS-3]
          Length = 1214

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 146/755 (19%), Positives = 255/755 (33%), Gaps = 142/755 (18%)

Query: 210 IEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           IE   ++++V +  + +K  R+  + +  KK ++          PE+  R + +   A +
Sbjct: 41  IEVPTSWSQVASDVIAQKYFRKAGVPSRLKKVREKG-------VPEFLWRSVPDS-DAEM 92

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RV 324
             E         LA    Y                 YF     +R    +  FM    R 
Sbjct: 93  GGEISSKQVFDRLAGAWCYWG-----------WKGGYFTTEEDARAYFDEMRFMLATQRA 141

Query: 325 A--------MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           A         GL              Y       +     T  +S   HPQ  +CF+ +V
Sbjct: 142 APNSPQWFNTGLHWAYGIDGPAQGHHY-----VDYKTGKLTKSDSAYEHPQPHACFIQSV 196

Query: 377 PDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            DDL    GI       A L KY  G G +++ +R  G  + G    S  ++ FLK+ + 
Sbjct: 197 SDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSGGGKSSG-LMGFLKIGDR 255

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNT 481
            A A+  G   R+ A    ++  H D+E+F+  +                  +  + +  
Sbjct: 256 AAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQWKVLEEQKVASIVAGSKMHEKMLNGIFA 315

Query: 482 A-----------------------------NWIPDLFMKRVTQNA-------GWTLFSPD 505
           A                               IP+ ++KRV   A        +  +  D
Sbjct: 316 AIRAWDGAEVDAYDPAVNEGLKAAIREAKKVAIPETYVKRVLDYAKQGHTSIEFPTYDTD 375

Query: 506 EVSDLHDLYGK-----------EFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTM 552
             S+ ++                F  A E        +R   KV + + A  LW K+   
Sbjct: 376 WDSEAYNSVSGQNSNNSIRVTNAFLKAVEKDADWELINRVNGKVAKTVKARDLWEKVGHA 435

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            +    P I F D  N        G +  SN C+E        +   CNL S+NLL    
Sbjct: 436 AWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMFL----DDTACNLASMNLLTFLK 491

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + +F  +      R     L+  + +     ++  + ++  R +GLG       L  +  
Sbjct: 492 DGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGY 551

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------------GS 714
            Y S E   +       ++  A + S E+A E G ++ ++                  G 
Sbjct: 552 GYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGYERNAANMLRVIRNHRTAAYGK 611

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                   +  + L      +  +   +   WDE     +  G RN+    IAPT TI  
Sbjct: 612 ANGYEQLSVKPVPLDHSNCPDPRLVELAMASWDEALSLGEKNGYRNAQSTVIAPTGTIGL 671

Query: 775 ICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGS 830
           +    +  I+P +  +  K    G +  + +  V    +   +  A I ++  +    G+
Sbjct: 672 VMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALENLGYSSAQIEEIVSYAVGHGT 731

Query: 831 IGNIERI-----------PDDLKKIHA---TAFEI 851
           IGN   I           P++L+K+ A   +AF+I
Sbjct: 732 IGNAPGINHTSLTGHGFGPNELRKVDAALESAFDI 766



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+      + +   +D      ++     + ++   I   A            
Sbjct: 792 NDPTFDLLRHLGFTKKDIDAANDHVCGTMTLEGAPHLSEEHYAIFDCANPCGKKGKRFLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K    Y   S+ + 
Sbjct: 852 VDSHITMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  + ++  D     +    P +    L 
Sbjct: 912 PLAAALIEDDDEAAEVLETGTPAAKAAVLA 941


>gi|167957457|ref|ZP_02544531.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 296

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 132/298 (44%), Positives = 193/298 (64%), Gaps = 3/298 (1%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N+R+   + G +H SNLCTEITL    +  AVCNL SINL  H   N++D+ +L 
Sbjct: 1   WKDTINVRALNNNTGTIHLSNLCTEITLPQDKDNIAVCNLVSINLSRHLNGNEWDWRRLE 60

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF   L  L + Y S E+ E+
Sbjct: 61  DSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFTDVLERLRLAYDSEESYEL 120

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
            D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID+I +L + RD ++ ++R 
Sbjct: 121 IDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPIDTIDILEKNRDIDVKISRN 180

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +DP +  ++ +S ++G F  
Sbjct: 181 SSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLDPRFTQIFSRSTLNGKFLE 239

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           VN  LV ELK R LW E +  +L  + G I NIE IPD++K ++ T+F+I P   IE 
Sbjct: 240 VNPNLVRELKDRSLWSE-VKDELLINQGDIQNIEAIPDEIKSVYKTSFQILPYAFIEV 296


>gi|254453532|ref|ZP_05066969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198267938|gb|EDY92208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 1206

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 128/626 (20%), Positives = 217/626 (34%), Gaps = 99/626 (15%)

Query: 298 LQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            Q  +D  RY L    +    PQ F      GL              Y       +    
Sbjct: 108 AQTYFDEMRYMLATQRAAPNSPQWFN----TGLHWAYGIDGPAQGHHY-----VDYKTGK 158

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G 
Sbjct: 159 LTASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRASGE 218

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +     
Sbjct: 219 SLSGGGKSSG-LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWKVLEEQ 277

Query: 472 --------------------DRRRTHD----------MNTA----------NWIPDLFMK 491
                               D  RT D          +N A            IP+ ++K
Sbjct: 278 KVASIVAGSKMHEQKLNLIFDAIRTWDGKADDAYDPKVNPALKDAVREAKKVCIPETYVK 337

Query: 492 RVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQADR 531
           RV   A        +  +  D  S+ ++                F  A E+    +  +R
Sbjct: 338 RVLDYARQGHTAIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVEDDANWKLINR 397

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V + I A  LW ++    +    P I + D  N        G +  SN C+E    
Sbjct: 398 KNGEVAKVIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMFL 457

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +   CNL S+NLL  F + +F  +      R     L+  + +     ++  + + 
Sbjct: 458 ----DDTACNLASMNLLKFFKDGEFQVEDYMHASRLWTVTLEISVMMAQFPSKEIAQRSF 513

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R +GLG       L  +   Y S E   +A      ++  + + S E+A E GA+S +
Sbjct: 514 DFRTLGLGYANIGGLLMNMGFGYDSDEGRSMAGALTAIMTGVSYATSAEIAGELGAFSGY 573

Query: 712 KGSL----------------WDQGV--FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
             +                    G     I  + L      +  +   +   WDE  +  
Sbjct: 574 GRNKDHMLKVIRNHRNAAYGASDGYEKLDIKPVPLDHANCPDARLIDIAMSTWDEALRLG 633

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V     
Sbjct: 634 EKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALA 693

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIP 838
           +  +  +   +++ +    G +   P
Sbjct: 694 KLGYSTSQAEEIQAYAVGHGTLGNAP 719



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEA--MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + LK      E   + +D      ++     + ++   +   A            
Sbjct: 775 NDPTFDLLKSLGFSKEDADLANDHVCGTMTLEGAPHLKEEHYVVFDCANPCGKTGKRYLS 834

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 835 VNSHIYMMAAAQSFISGAISKTINMANNATIEDCQKAYELSWSLGIKANALYRDGSKLSQ 894

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +  A  + + N    +  I  
Sbjct: 895 PLAAALIEDDEEAADILENGNIHAKAQVIAE 925


>gi|330984035|gb|EGH82138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 260

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 160/263 (60%), Positives = 205/263 (77%), Gaps = 5/263 (1%)

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           + HIPYAS  AVE AD+SME IS++AI AS +LA ERGAY+SF+GSLW QG+ P+DS  +
Sbjct: 1   MQHIPYASEAAVEFADKSMEAISYYAIQASCDLADERGAYASFQGSLWSQGILPLDSQEI 60

Query: 729 LAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           L   R E  + ++++S L W  +++RVK  G+RNSN MAIAPTATI+NI GV+QSI+P+Y
Sbjct: 61  LIAHRGEQYIEVDKSSTLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVTQSIEPTY 119

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTV+N  LV +LK R LWD  M+++LK++DGS+  I+R+P DLK ++A
Sbjct: 120 QNLYVKSNLSGEFTVINPHLVIDLKARGLWDAVMVNELKHYDGSVQQIDRVPQDLKTLYA 179

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE++  WLI+ ASRRQKW+DQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ 
Sbjct: 180 TAFEVEVRWLIDGASRRQKWLDQAQSLNLYIAGASGKKLDTAYRMAWYRGLKTTYYLRAL 239

Query: 907 SATSVEKSTLKGVDGKLNAVPVT 929
           +ATS EKST+    GKLNAV   
Sbjct: 240 AATSTEKSTINT--GKLNAVSAQ 260


>gi|323137682|ref|ZP_08072758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
 gi|322396979|gb|EFX99504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
          Length = 1212

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 146/747 (19%), Positives = 257/747 (34%), Gaps = 108/747 (14%)

Query: 206 SRTLIEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S   IE    +++V A  L +K  R+  + T  K+ ++ +                    
Sbjct: 37  SLDNIEVPTQWSQVAADVLAQKYFRKAGVPTRLKRVEENSIPSFLWRSIADTEALAALPK 96

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLG----LQILYD--RYFLHINGSRIEMPQ 318
             R   E+        LA    Y   +   Y       +   D  RY L    +    PQ
Sbjct: 97  DQRHTSETSARQVFDRLAGAWTYW-GWKGGYFDSEEDARAFSDELRYMLATQMAAPNSPQ 155

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F      GL             FY       +         S   HPQ  +CF+ ++ D
Sbjct: 156 WFN----TGLHWAYGVDGPSQGHFY-----VDYANGKMVKSKSAYEHPQPHACFIQSIED 206

Query: 379 DLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           DL    GI       A L KY  G G +++ +RG    + G    S  ++ FLK+ +  A
Sbjct: 207 DLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGEKEKLSGGGSSSG-LMSFLKIGDRAA 265

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT------------------------- 469
            A+  G   R+ A    ++  H D+E F+D +                            
Sbjct: 266 GAIKSGGTTRRAAKMVVVDVDHPDIEAFVDWKVKEEEKVASLVTGSKIVKKHLKAILRAC 325

Query: 470 ------GDD---------RRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEV 507
                 GDD          +R   +   N +PD F+KRV Q       +  +  +  D  
Sbjct: 326 VNCDGPGDDCFNPEKNPALKREIKLARRNEVPDNFIKRVIQFARQGYKDISFETYDTDWD 385

Query: 508 SDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLF 554
           S+ +                EF  A EN        R + KV + + A  LW K+    +
Sbjct: 386 SEAYLTVSGQNSNNSVRVTDEFLHAVENDGDWNLIKRLDGKVSKTLKARDLWEKIGYAAW 445

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
            +  P I F    N        G + +SN C+E        +   CNL S+NLL    + 
Sbjct: 446 ASADPGIQFHTTINDWHTCPAGGPIRASNPCSEYMFL----DDTACNLASLNLLQFRDDE 501

Query: 614 -NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             + D D     +R    VL+  + +     ++  + ++ +R +GLG       L    +
Sbjct: 502 TKRIDVDSYEHAVRLWTIVLEISVLMAQFPSKEIAQLSYDYRTLGLGYANVGGLLMSSGV 561

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD--------------- 717
            Y S     I       ++    + S E+A+ERG ++ F  +                  
Sbjct: 562 AYDSAAGRAITGALSAIMTGVCYATSAEMAKERGPFARFMENRESMLRVVRNHRRAAHGE 621

Query: 718 ---QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                   +  + L      +  +   +   WD+   + +  G RN+    +APT TI  
Sbjct: 622 HDGYESLAVKPVPLDIASCPDPLLAERAAAAWDKALSQGELYGYRNAQVTVVAPTGTIGL 681

Query: 775 ICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +    +  I+P +  +  K    G +  + +  V E  +   + E+ I++++ +     +
Sbjct: 682 VMDCDTTGIEPDFALVKFKKLAGGGYLKIVNRAVPEGLRALSYRESEIAEIEAYAVGHAS 741

Query: 834 IERIPD-DLKKIHATAFEIDPMWLIES 859
           +   P  +   + A  F  + +  +E+
Sbjct: 742 LANAPAINTASLRARGFTDEKLAAVEA 768



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              I   +  Q +I  A S  + + ++ S +  +  Y  +W +GLK     R  S  S  
Sbjct: 863 ESHIRMMAAAQPFITGAISKTINMPNDASIEDCEQAYLLSWRLGLKANALYRDGSKLSQP 922

Query: 913 KST 915
            S 
Sbjct: 923 LSA 925


>gi|209964247|ref|YP_002297162.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209957713|gb|ACI98349.1| B12-dependent ribonucleoside diphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 1246

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 134/654 (20%), Positives = 230/654 (35%), Gaps = 129/654 (19%)

Query: 308 HINGSRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
              GS I   +  F R+A          G    E +      E   +L+      ++P  
Sbjct: 98  KRTGSEI-SARQVFDRLAGTWAYWGWKGGYFDGEADARVFYDEMRFMLARQMAAPNSPQW 156

Query: 359 FNSG------------------------------TRHPQLSSCFLTTVPDDLY---GIFG 385
           FN+G                                HPQ  +CF+ +V DDL    GI  
Sbjct: 157 FNTGIHWAYGIDGPSQGHFYVDFRTGELVKSETAYEHPQPHACFIQSVDDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G +++ +RG G  +    GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGTNFSRLRGEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNT-----------------------------GDDRRR 475
           + A    ++  H D+E ++D +                                G D  R
Sbjct: 276 RAAKMVTVDLDHPDIEAYIDWKVAEEQKVAALVTGSKTVRKHLTMVMAACTEGFGPDADR 335

Query: 476 TH-DMNTAN----------WIPDLFMKRVTQ-------NAGWTLFSPDEVSDLH-DLYGK 516
                N A            +P+ +++R  Q       +    +F  D  S+ +  + G+
Sbjct: 336 LDPQKNKALKRAIIAARKALVPENYIQRAVQLAGQGYTDFDVRVFDTDWDSEAYLTVSGQ 395

Query: 517 EFEIAY-------ENYERQA-----DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +        E  E  A      R + K  R + A ALW K+    +++  P + F 
Sbjct: 396 NSNNSVRIPNAFLEAVETDADWTLIRRTDGKPARTLKARALWDKIAYAAWQSADPGVQFD 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLAS 623
              N        G +++SN C+E        +   CNL SINL+     +  FD      
Sbjct: 456 TTINEWHTCPASGRINASNPCSEYMFL----DDTACNLASINLMEFRRTDGSFDIPAFEH 511

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             R    VL+  + +      +  + ++ +R +GLG       L    IPY S E   I 
Sbjct: 512 ACRLWTVVLEISVLMAQFPSREIARLSYEYRTLGLGFANIGGLLMASGIPYDSTEGRAIC 571

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWD------------------QGVFPIDS 725
                 ++  A + S E+AQE G +  +  +                          +  
Sbjct: 572 GAITAIMTGIAYATSAEMAQELGPFPGYAQNREAMLRVIRNHRRAAHGARSGYEDLSVLP 631

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
           + L A+   + A+   ++  WD+     +  G RN+    +APT TI  +    +  I+P
Sbjct: 632 VALRADDCPDAALMDAAKAAWDKALALGEAHGFRNAQATVLAPTGTIGLVMDCDTTGIEP 691

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            +  +  K    G +  + +  V E   R  +    I+ ++ +    G ++  P
Sbjct: 692 DFALVKFKKLAGGGYFKIINRAVPEALSRLGYTPEEITRIERYAVGHGTLQGAP 745



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 13/134 (9%)

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKK 843
           +   +    +      ++ F  + L         + +   Y  G  ++     + D+   
Sbjct: 784 FGEAFCTETLGIPPAALDDFGFDMLAFLGFGKAEIEAANVYCCGAMTLEGAPGLKDEHLP 843

Query: 844 IHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWL 894
           +   A          +     I   +  Q +I  A S  + +   +G ++    Y  +W 
Sbjct: 844 VFDCASPCGKVGRRYLSAQSHIRMMAAAQPFISGAISKTINMPNHAGVEECKDAYLLSWR 903

Query: 895 MGLK--TTYYLRSR 906
           +GLK    Y   S+
Sbjct: 904 LGLKANALYRDGSK 917


>gi|307945073|ref|ZP_07660409.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
 gi|307770946|gb|EFO30171.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
          Length = 1227

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 123/632 (19%), Positives = 222/632 (35%), Gaps = 100/632 (15%)

Query: 294 EYLGLQILYD--RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
                +  YD  RY L         PQ F      GL             +Y       +
Sbjct: 129 SEADARAFYDELRYMLATQKVAPNSPQWFN----TGLHWAYGIDGPSQGHYY-----VDY 179

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVR 408
                T   +   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ VR
Sbjct: 180 ETGKLTKSATAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSNFSRVR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA-----------YLETW- 455
           G G  +    GKS G++ FLK+ +  A A+  G   R+ A              Y+    
Sbjct: 240 GEGEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDVEEYINWKV 298

Query: 456 ------------------HID--VEEFLDLRKNTGDDR--------RRTHDMNTANWIPD 487
                             H+   ++  ++   + GD          +R         +P+
Sbjct: 299 KEEQKVAALVTGSKICQKHLSAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKMMVPE 358

Query: 488 LFMKRVTQNA-------GWTLFSPDEVSDLH-DLYGKEFEIAY------------ENYER 527
            +++RV Q A        +  ++ D  S+ +  + G+    +             +    
Sbjct: 359 NYIQRVIQFARQGFTKIEFPTYNTDWDSEAYLTVSGQNSNNSVRVTDGFLKAVMTDGDWD 418

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R      + I A  LW ++    + +  P + +    N        G + +SN C+E
Sbjct: 419 LTARRSGDAIKTIKAKELWEQIGYAAWASADPGLQYHTTINDWHTCPASGEIRASNPCSE 478

Query: 588 ITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   +   CNL S+NL+     +  FD +     +R    VL+  + +     ++ 
Sbjct: 479 YMFL----DDTACNLASLNLMQFRNEDRSFDVESYEHAVRLWTMVLEVSVLMAQFPSKEI 534

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R  GLG       L    IPY S E   I       ++  A + S E+A E G
Sbjct: 535 AELSYRYRTTGLGYANIGGLLMTSGIPYDSTEGRAICGALTAIMTGVAFATSAEMAGELG 594

Query: 707 AYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +K                  G          D + L      +  +   ++  WD+
Sbjct: 595 PFPGYKDNAKHMLRVMRNHRRAAFGEASGYEKLSTDPVPLDHASCADKRLVERAKAAWDK 654

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 655 ALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 714

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            E      + E+ I++++ +    G++++ P 
Sbjct: 715 PEALSVLGYSESQIAEIEAYAVGHGSLDQAPA 746



 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W + LK    Y   S+
Sbjct: 889 TVEDCMEAYMLSWKLALKANALYRDGSK 916


>gi|304391737|ref|ZP_07373679.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
 gi|303295966|gb|EFL90324.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
          Length = 1248

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/661 (18%), Positives = 226/661 (34%), Gaps = 140/661 (21%)

Query: 297 GLQIL--YDRYFLHINGSRIEMPQAFFMRVAM---------GLALKETEKEKRAVEFYNL 345
            ++ L   +RY            +  F R+A          G    E + +    E   +
Sbjct: 90  AMKKLPEEERY------GPEMTAEQVFSRLAGTWTYWGWKGGYFTTEEDAQAYYDELCFM 143

Query: 346 LSSFHFMCSTPTLFNSG------------------------------TRHPQLSSCFLTT 375
           L++     ++P  FN+G                                HPQ  +CF+  
Sbjct: 144 LATQKVAPNSPQWFNTGLHWAYGIDGPAQGHHYVDFETGKLTKSKTSYEHPQPHACFIQG 203

Query: 376 VPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           V DDL    GI       A L KY  G G++++ +RG    +    GKS G++ FLK+ +
Sbjct: 204 VGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYIRGENEPLS-GGGKSSGLMSFLKIGD 262

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------ 473
             A A+  G   R+ A    ++  H D+E ++D +                         
Sbjct: 263 RAAGAIKSGGTTRRAAKMVVVDIDHPDIEAYIDWKVKEEQKVAAIVTGSKVVSKHMTAIM 322

Query: 474 ----------------------RRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSP 504
                                 +R       N +P+ ++ RV         +  + +++ 
Sbjct: 323 KACINCEADGDQCFEPASNPVLKREIRAAKRNSVPENYIARVIMLAKQGFTDIEFPVYNT 382

Query: 505 DEVSDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLT 551
           D  SD +                +F  A E         R +  V + + A  LW K+  
Sbjct: 383 DWDSDAYLTVSGQNSNNSVSIKDDFLRAVEADGTWDLIARRDGSVVKSVQARELWDKIGN 442

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +++  P + +    N        G + +SN C+E        +   CNL S+NLL   
Sbjct: 443 AAWQSADPGLHYNTTMNDWHTCPEAGPIRASNPCSEYMFL----DDTACNLASLNLLQFR 498

Query: 612 ANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +++ FD +      R  + VL+  + +     ++  + ++ +R  GLG       L   
Sbjct: 499 RDDKSFDVEAFEHATRLWMMVLEISVLMAQFPSKEIAQLSYDYRTTGLGFANIGGLLMTA 558

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------------------K 712
            IPY S E   +       ++      S E+A+E+G +  +                   
Sbjct: 559 GIPYDSDEGRAVCGAITAIMTGICYETSAEMAKEQGPFPGYAPNAEHMARVMRNHRNAAH 618

Query: 713 GSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           G+        I+ + L     +       ++  ++  WD   +     G RN+    IAP
Sbjct: 619 GNAEGYDALAINPVPLDHASLEGRARWAGLSDHAKAAWDRAVELGNEHGYRNAQSTVIAP 678

Query: 769 TATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI  +    +  I+P +  +  K    G +  + +  V E      +DEA I  +  +
Sbjct: 679 TGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALGSLGYDEATIKRMITY 738

Query: 828 D 828
            
Sbjct: 739 A 739



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 13/130 (10%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +  +   +N F  + L       + + +   Y  G  ++     + D+   +   
Sbjct: 792 FCKETLGLNDEQLNDFSFDLLGAIGFSKDEVQAANIYCCGAMTLEGAPGLKDEHLAVFDC 851

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I  A S  + + ++ + +     Y  +W +GLK
Sbjct: 852 ATPCGRIGTRSLSTHSHIKMMAAAQPFISGAISKTINMPNDAAVEDCTEAYMMSWKLGLK 911

Query: 899 --TTYYLRSR 906
               Y   S+
Sbjct: 912 ANALYRDGSK 921


>gi|163731970|ref|ZP_02139416.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
 gi|161394268|gb|EDQ18591.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
          Length = 912

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/571 (19%), Positives = 201/571 (35%), Gaps = 88/571 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +
Sbjct: 187 YKTGKLTRSKSSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSL 246

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
           R  G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 247 RAAGEGLSGGGKSSG-LMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 305

Query: 467 KNTGDD-----------RRRTHDMNTA-----------------------------NWIP 486
                             ++ + +  A                               IP
Sbjct: 306 VVEEQKVASIVAGSKMHEQKLNLLFDAIKTWDGAEEDAYDPSKNAALKQAIREAKKVAIP 365

Query: 487 DLFMKRVTQNA-------GWTLFSPDEVSDLHDLYGK-----------EFEIAYENY--E 526
           + ++KRV   A        +  +  D  S+ +                 F  A E+    
Sbjct: 366 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLKAVEDDADW 425

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +R + KV + I A  LW K+    +    P I + D  N        G +  SN C+
Sbjct: 426 ELINRVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGAIRGSNPCS 485

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 486 EYMFL----DDTACNLASMNLLTFLKDGEFQIEDYMHASRLWTVTLEISVMMAQFPSKEI 541

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   I       ++  + + S E+A E G
Sbjct: 542 AQRSYDFRTLGLGYANIGGLLMNMGYSYDSTEGRAICGALTAIMTGVSYATSAEMAGELG 601

Query: 707 AYSSFKGS------------LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +  +                G         ++ + L  +   +  M   +R  WD+
Sbjct: 602 PFPGYAKNADNMLRVIRNHRTAAYGKVGGYEDLAVNPVPLDYKSCPDARMIDVARGAWDQ 661

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 662 ALELGQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 721

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
               ++  +  A I ++  +      I   P
Sbjct: 722 PGALEKLGYGSAQIEEIVSYAVGHATIGNAP 752


>gi|109290087|ref|YP_656336.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
 gi|104345760|gb|ABF72660.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
          Length = 570

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 170/670 (25%), Positives = 259/670 (38%), Gaps = 152/670 (22%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
             FL     + E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT
Sbjct: 33  SMFLKNYQYKGETVRGAFRRVASTLAKHDIRPEA-EERYFDLLWSGKLAMATPVFCNTGT 91

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                 SC  + V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G
Sbjct: 92  DRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADG 151

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P      +T   V     R+G    Y++  H D  E                      
Sbjct: 152 LVPVFDNFVNTKTKVA-AAGRRGEWAGYVDFSHGDFWEL--------------------- 189

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
                         G+ L +P          G  FE   E+YE+   R    + R     
Sbjct: 190 -------------QGYVLKNPASAH-----VGWVFEK--EDYEKLLARDPEYMAR----- 224

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG-VVHSSNLCTEITLNSSSEETAVC 600
             W ++L M   TG  ++      N  +PQ  ++ G  + SS LCTEI L S    T  C
Sbjct: 225 --WNELLYMRARTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTC 282

Query: 601 NLGSINLLAHFANNQFDYDKL-ASTIRTAVRVLDNVIDIN--------CHTIEKAKKSNH 651
            L S+NL          +D++ A  I+ AVR LD+V              T+ KA +   
Sbjct: 283 ILSSLNLAR--------WDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTE 334

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +GF + L +    + S  A  + +     I  +A +AS ELA+E G     
Sbjct: 335 KARALGLGTLGFHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGEPEWC 394

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            G+                                          GMRN+  + IAP  +
Sbjct: 395 VGT------------------------------------------GMRNATLITIAPNMS 412

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKYH 827
            A + G VSQ ++P   N +++ + +GDF   N  L   L  R    E    M +   YH
Sbjct: 413 SALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDRLSDKEIKDLMENIATYH 472

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LD 886
           +GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      +  + 
Sbjct: 473 NGSVQHLDILTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVA 532

Query: 887 FIYRQAWLMG--LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            +++ A++    LK+ YYLRS                                     + 
Sbjct: 533 SVHK-AFMDDPRLKSLYYLRSERGV--------------------------------KAS 559

Query: 945 TSDTECEVCQ 954
           T + EC  CQ
Sbjct: 560 TGEVECLACQ 569


>gi|78044854|ref|YP_359531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996969|gb|ABB15868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 1101

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 150/326 (46%), Gaps = 40/326 (12%)

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L         CNLGSINL     + + D++ L  T++ AVR LDNVID+N + +
Sbjct: 615 DCGEQPLLPYES----CNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPL 670

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +K     R IGLG+MGF   L  L+IPY S EA+ +AD+ MEFI+  +  AS ELA+
Sbjct: 671 PEIEKMTKKTRKIGLGVMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELAR 730

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG + ++K S+W +                                   K + +RN+  
Sbjct: 731 VRGTFPAWKKSVWAK-----------------------------------KGLKLRNATT 755

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             IAPT +I+ I GVS  I+P +   + +  +     V    L  +  + + +    + +
Sbjct: 756 TTIAPTGSISIIAGVSSGIEPVFALAFKRHILDRKDIVEVHRLFEQHARENGYYSEKLMN 815

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                G I  I  +P++ K++  TA +I P W ++  +  QK  D A S  + +    + 
Sbjct: 816 EVAKTGRITGIAGVPEEAKRLFVTALDIAPEWHVKMQAVFQKHTDNAVSKTINMPNSATV 875

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +   Y  A+ +G K     R  S 
Sbjct: 876 EDVKESYLLAYKLGCKGLTVYRDGSR 901



 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 37/302 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNL 345
                 L++L  RY      G  IE P+  F RVA  +A  E      ++E+ A EFYN 
Sbjct: 3   KLTENALKVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNF 62

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++  F+ +TPTL N+G    QLS+CF+  V D +  IF A++ +A++ K  GG G  ++
Sbjct: 63  MTALDFLPNTPTLVNAGRPLGQLSACFVLPVGDSMEEIFDAVKYSALIHKSGGGTGFSFS 122

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  
Sbjct: 123 RLRAKGARVRSTGGIASGPVSFMKVFNAATEAVKQGGVRRGANMGVLRCDHPDILEFITA 182

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +    +D R   + N +  + D FMK + ++  + L  P                     
Sbjct: 183 K----EDNRDITNFNISVALTDKFMKALEEDGEYELIEPSTGE----------------- 221

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V  ++ A  ++ ++    ++ G P + F D  N  +    +G + S+N C
Sbjct: 222 ----------VVGRLRAREVFERIARNAWKNGEPGVIFIDRINAANVVPELGEIESTNPC 271

Query: 586 TE 587
             
Sbjct: 272 VT 273


>gi|310722362|ref|YP_003969186.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
 gi|306021205|gb|ADM79740.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
          Length = 570

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 170/669 (25%), Positives = 257/669 (38%), Gaps = 150/669 (22%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
             FL     + E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT
Sbjct: 33  SMFLKNYQYKGETVRGAFRRVASTLAKHDIRPEA-EERYFDLLWSGKLAMATPVFCNTGT 91

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
                 SC  + V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G
Sbjct: 92  DRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADG 151

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P      +T   V     R+G    Y++  H D  E                      
Sbjct: 152 LVPVFDNFVNTKTKVA-AAGRRGEWAGYVDFSHGDFWEL--------------------- 189

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
                         G+ L +P          G  FE   E+YE+   R    + R     
Sbjct: 190 -------------QGYVLKNPASAH-----VGWVFEK--EDYEKLLARDPEYMAR----- 224

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG-VVHSSNLCTEITLNSSSEETAVC 600
             W ++L M   TG  ++      N  +PQ  ++ G  + SS LCTEI L S    T  C
Sbjct: 225 --WNELLYMRARTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEIALPSDDMHTFTC 282

Query: 601 NLGSINLLAHFANNQFDYDKL-ASTIRTAVRVLDNVIDIN--------CHTIEKAKKSNH 651
            L S+NL          +D++ A  I+ AVR LD+V              T+ KA +   
Sbjct: 283 ILSSLNLAR--------WDEISAEDIKWAVRFLDSVCSEFLEKAKKLPYDTLHKAIRFTE 334

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             RA+GLG +GF + L +    + S  A  + +     I  +A +AS ELA+E G     
Sbjct: 335 KARALGLGTLGFHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRELAEEHGEPEWC 394

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            G+                                          GMRN+  + IAP  +
Sbjct: 395 VGT------------------------------------------GMRNATLITIAPNMS 412

Query: 772 IANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKYH 827
            A + G VSQ ++P   N +++ + +GDF   N  L   L  R    E    M +   YH
Sbjct: 413 SALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDRLSDKEIKDLMENIATYH 472

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           +GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +  
Sbjct: 473 NGSVQHLDILTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFAADEKESVVA 532

Query: 888 IYRQAWLMG--LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
              +A++    LK+ YYLRS                                     + T
Sbjct: 533 SVHRAFMDDPRLKSLYYLRSERGV--------------------------------KAST 560

Query: 946 SDTECEVCQ 954
            + EC  CQ
Sbjct: 561 GEAECLACQ 569


>gi|300853872|ref|YP_003778856.1| putative ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433987|gb|ADK13754.1| predicted ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 1013

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/635 (18%), Positives = 215/635 (33%), Gaps = 77/635 (12%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENA---MLAKYSGGLGNDWTPVRGLGAHIHGTN 418
                Q S+CF+ ++ D L G      +      L K   G G +++ +R  G  + G  
Sbjct: 170 NYTRTQASACFILSIEDKLLGSHSISNQFVTETKLFKGGSGTGTNFSTIRAKGEKLSGGG 229

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             S  ++ FLK  +  A A+  G   R+ A    L+  H ++ +F++ +    D  R   
Sbjct: 230 SSSG-LMSFLKALDKNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFINWKSKEEDKVRALG 288

Query: 478 DMNTANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            M     I     + V+ QN+  ++   DE  +       + E   ++      R + K+
Sbjct: 289 KMGYDTDIDGEAYETVSGQNSNNSVRFSDEFMNKV----SKLEQNPDDTIELIGRTDPKL 344

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R      +W       ++   P   F    N             +     I   +   E
Sbjct: 345 NRIEKIKNIWDAFNNSAWKCADPAPQFSTTFNAWHTCPAGEDGKLNAPYNRINSTNPCGE 404

Query: 597 TA-----VCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            A      CNL SIN+   +   NN FD +     I     +L++ I       E   + 
Sbjct: 405 YAFLDDTSCNLASINIYKFYNITNNTFDIEGYLHIIDLVQLILESSIHWGQFPTEDIARK 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
            +  R  GLG+    S   ++  PY S EA  +A   +  ++  +   S  +A+E G + 
Sbjct: 465 TYLFRTTGLGISNIASLFMVMGYPYDSDEARTLAASLVGILTGESYYVSSLMAKEIGPFK 524

Query: 710 SFK---------------------------------GSLWDQGVFPIDSIGLLAEVRDEL 736
            F+                                     D    P+     + +     
Sbjct: 525 KFEINKPYMMRVLRNHARAASVDIESLQAILGNNFSNEFEDLNYVPLKVKHSVLKKEGLS 584

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM 795
            + +T +  W    K     G RN+    IAPT TI+      + SI+P + ++  K   
Sbjct: 585 YIGKTLKDCWINALKSGIKFGYRNAQVSVIAPTGTISFAMDCGATSIEPFFSHIVYKKLS 644

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYH------------------DGSIGNIERI 837
            G F  + + ++    +   +    I D+  +                  DG I     +
Sbjct: 645 GGGFMTIINPVITIALKNLGYTSEQIEDILSYVLEKENVSENDYTYEKILDGKIEGAPHL 704

Query: 838 PDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
            D+   I  T+ +       IDPM  ++  +     I  + S  + L    S +    + 
Sbjct: 705 KDEHLSIFDTSNKCGSGERYIDPMGHVKMVASLTPLISGSVSKTVNLPKTASVQDFKDVV 764

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
             +W +G+K     R  S  +   +T       +N
Sbjct: 765 LTSWKLGVKGITLYRDSSKAAQPLNTTLSDSNDIN 799


>gi|163795180|ref|ZP_02189148.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
 gi|159179578|gb|EDP64107.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
          Length = 1248

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 118/573 (20%), Positives = 203/573 (35%), Gaps = 90/573 (15%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           F     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +
Sbjct: 179 FKTGKLTRSKSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKL 238

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL- 465
           RG    +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++  
Sbjct: 239 RGENESL-AGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVSVDIDHPDIEAYIEWK 297

Query: 466 ----------------------------------------RKNTGDDRRRTHDMNTANWI 485
                                                         + +       A  I
Sbjct: 298 VVEEQKVAALVAGSKLAARNMKAVMKACVDAKASLGDAAYEPTANPELKAAIKSAKAAMI 357

Query: 486 PDLFMKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY-- 525
           P  +++RV Q A        +  +  D  SD +                EF  A E    
Sbjct: 358 PLNYVQRVIQFAKQGFTEIDFKTYDTDWDSDAYLTVSGQNSNNSVRVSDEFLQAVEADGD 417

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R + K+   + A  LW K+    +    P + +    N        G +++SN C
Sbjct: 418 WNLIRRTDGKIAATVKANDLWEKIAHAAWACADPGLQYDTTINDWHTCPAGGRINASNPC 477

Query: 586 TEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E        +   CNL S+NL+    A+  F+        R     L+  + +     +
Sbjct: 478 SEYMFL----DDTACNLASMNLMQFQRADGSFNVAAYEHATRLWTVTLEIAVLMAQFPSK 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  K ++ +R +GLG       L  + + Y SP+   +       ++  A + S ELA E
Sbjct: 534 EIAKLSYDYRTLGLGYANIGGLLMAMGLSYDSPKGRAMCGALTAVMTGVAYATSAELAGE 593

Query: 705 RGAYSSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            GA+  +K +                          I  + L A       +   +R  W
Sbjct: 594 IGAFPRYKENAESMLRVIRNHRRAAHGDVTGYESLSITPVPLDAASCPSSELVEAARRAW 653

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D      +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 654 DSALALGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYFKIINR 713

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +V +  Q   +DEA +  +  +    G ++  P
Sbjct: 714 VVPQALQTLGYDEAEVEAIVRYAVGYGTLKGAP 746



 Score = 59.8 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 49/162 (30%), Gaps = 13/162 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + +  +      +N    + L         + +   Y  G  ++    ++  +   +   
Sbjct: 789 FCRETLGFTDEQMNDPAFDMLVALGYSKVEVEAANTYVCGAMTLEGAPKLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + +    + +     Y  +W +GLK
Sbjct: 849 ANPCGRIGKRYLSAESHIRMMAAAQPFISGAISKTINMPNSAAVEDCKEAYILSWRLGLK 908

Query: 899 --TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
               Y   S+ +  +  ST    D +        P +    +
Sbjct: 909 ANALYRDGSKLSQPLSASTFDFEDEEEADEFAAQPAAVKAPV 950


>gi|189499762|ref|YP_001959232.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides BS1]
 gi|189495203|gb|ACE03751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium phaeobacteroides BS1]
          Length = 1161

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 120/573 (20%), Positives = 216/573 (37%), Gaps = 88/573 (15%)

Query: 348 SFHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    +  +  S      PQ  +CF+ +V DDL    GIF      A + K+  G G 
Sbjct: 158 HFYIDPESGKVRESKDAYSRPQAHACFIQSVTDDLVNDGGIFDLALREARVFKFGSGSGT 217

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +R  G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+
Sbjct: 218 NFSNLRSAGEKLSGGGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEK 276

Query: 462 FLDLRKNTGD----------------------------DRRRTHDMNT------ANWIPD 487
           F++ +    D                            DR++   ++T         +P 
Sbjct: 277 FIEWKSKEEDKVASLVSGSRVCSTFLKAIVDEASKNGCDRQKNEALHTLMKNAVGRGVPM 336

Query: 488 LFMKRVTQ--NAGWTLFSPDEVSDLHDLYGK----------------EFEIAYENYE--R 527
            ++ RV    + G+T    DE +  ++                     F  A EN E   
Sbjct: 337 NYIVRVLSLVDQGFTSLDFDEYNAQYESEAYQTVSGQNSNNTVRVTNAFMKAVENDELWE 396

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +R      R + A  LW K++   ++   P + F    N        G +++SN C+E
Sbjct: 397 LKERTTGMHVRSVRARDLWDKIVMSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSE 456

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   + + CNL S+NL             D L    R    VL+  + +     + 
Sbjct: 457 YMFL----DDSACNLASLNLGRFLDEKSGTIKIDDLLHASRLWTVVLEISVLMAHFPSKD 512

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++  R +GLG     + L ++ IPY SP+A+ IA      I+  A  AS ELA++ 
Sbjct: 513 IARLSYEFRTLGLGFANIGTVLMIMGIPYDSPKALAIAGAISALITGEAYKASAELARDL 572

Query: 706 GAYSSFKG-------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           G ++ ++                    S  +     +   G+ +E      +  T+   W
Sbjct: 573 GPFARYEENAGDMMRVIKNHRRAAHNMSEDEYEGLSVKPRGIDSEYCPS-ELFATAGKVW 631

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DE     +  G RN+    IAPT TI  +    +  ++P +  +  K    G +  + + 
Sbjct: 632 DEALDMGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVNH 691

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            V++  +R  +    I  ++ +    G +   P
Sbjct: 692 SVHKALERLGYSAKQIEGIEKYCKGHGTLAGCP 724



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I+ M  +   S  Q +I  A S  + +    + +++  +Y   W   +K     R  S  
Sbjct: 837 INHMAHVRMMSAVQPFISGAISKTVNMPGSATTQEIAEVYFSGWQHMIKAITIYRDGSKL 896

Query: 910 SV 911
           S 
Sbjct: 897 SQ 898


>gi|302393703|sp|Q72S00|NRDJ_LEPIC RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
          Length = 1201

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 144/724 (19%), Positives = 246/724 (33%), Gaps = 115/724 (15%)

Query: 215 NYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           ++++V    L +K  RR+ +    KK Q+    E          +      + R   E+ 
Sbjct: 46  DWSQVAVDILAQKYFRRKGVPKYLKKVQEDGIPEWLQKSIPDTEKLESLKPEDRFGGETS 105

Query: 274 MDFDLVYLANDLKYERDFAFEYLG----LQILYDR--YFLHINGSRIEMPQAFFMRVAMG 327
                  LA    Y   + ++Y       +I YD   Y L    +    PQ F      G
Sbjct: 106 ALEVFHRLAGCWTYW-GYKYKYFSDEESAKIFYDEIVYMLATQMAAPNSPQWFN----TG 160

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIF 384
           L        K    +Y                 S   HPQ  +CF+ +V DDL    GI 
Sbjct: 161 LNWAYGIDGKSQGHYY-----VDPSTGKLVKSTSAYEHPQPHACFIQSVDDDLVNEGGIM 215

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
                 A L KY  G G +++ +RG    +    GKS G++ FLK+ +  A A+  G   
Sbjct: 216 DLWVREARLFKYGSGTGTNFSNLRGENEPLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTT 274

Query: 444 RKGAVCAYLETWHIDVEEFLD-----------------------------LRKNTGDDR- 473
           R+ A    L+  H D+E F+D                               +  G+DR 
Sbjct: 275 RRAAKMVCLDVDHPDIENFIDWKVTEEKKVASLVTGSMLNNRHLNAIMSACYEMEGEDRF 334

Query: 474 --------RRTHDMNTANWIPDLFMKRVTQNA--------------GWTLFSPDEVSDLH 511
                   ++T        IPD ++KRV   A               W   + + VS  +
Sbjct: 335 NPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLARQGYKEILFEELTTDWQSDAYNTVSGQN 394

Query: 512 DLYG----KEFEIAYENYE------------RQADRGEIKVFRKISAVALWRKMLTMLFE 555
                    EF  A E  +             + +  + K  + + A  LW K+    + 
Sbjct: 395 SNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAKVEGRKAKPSQTLRARELWEKISYAAWA 454

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           +  P   +    N        G +++SN C+E     ++     CNL S NL        
Sbjct: 455 SADPGTQYHTTINEWHTCPEDGPINASNPCSEYMFLDNT----ACNLASANLQKFVNLET 510

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD +      +    +L+  + +     ++  + ++  R +GLG     S L +L IP
Sbjct: 511 LNFDVEGFRYLCKLWTIILEISVTMAQFPSKEIAELSYKFRTLGLGYANLGSVLMVLGIP 570

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGVF 721
           Y S +A+ I       +   A + S E+A+E+G +  +  +                   
Sbjct: 571 YDSQQAMAITGAISSIMHMTAYATSAEMAKEQGPFVGYAKNQKHMLRVIRNHRRAAYNAP 630

Query: 722 PIDSIGLL------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             D  GL               M + ++   D      +  G RN+    IAPT TI  +
Sbjct: 631 SGDYEGLTITPIGINPAFCPSYMLKAAQEDADLALSLGEKYGFRNAQVTVIAPTGTIGLV 690

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    ++  +  + I  +  +      +
Sbjct: 691 MDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPYGLKKLGYSPSEIEAIVNYCKGHATL 750

Query: 835 ERIP 838
              P
Sbjct: 751 NGAP 754



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 810 LKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------IDPMWLIES 859
           L+      E +     Y  G+  I N   + +    +   A +        +     I  
Sbjct: 817 LEHLGFTKEDINKANDYVCGTMTIENAPFLKEKDYPVFDCANKCGKYGKRFLSYESHIRI 876

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            +  Q +I  A S  +   +E   + +   Y  +W M +K     R  S  S   +++
Sbjct: 877 MAAAQPFISGAISKTINLPEEAVIEDIKNAYFLSWKMMIKANALYRDGSKLSQPLNSV 934


>gi|45657460|ref|YP_001546.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600699|gb|AAS70183.1| ribonucleotide reductase protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1209

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 144/724 (19%), Positives = 246/724 (33%), Gaps = 115/724 (15%)

Query: 215 NYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           ++++V    L +K  RR+ +    KK Q+    E          +      + R   E+ 
Sbjct: 54  DWSQVAVDILAQKYFRRKGVPKYLKKVQEDGIPEWLQKSIPDTEKLESLKPEDRFGGETS 113

Query: 274 MDFDLVYLANDLKYERDFAFEYLG----LQILYDR--YFLHINGSRIEMPQAFFMRVAMG 327
                  LA    Y   + ++Y       +I YD   Y L    +    PQ F      G
Sbjct: 114 ALEVFHRLAGCWTYW-GYKYKYFSDEESAKIFYDEIVYMLATQMAAPNSPQWFN----TG 168

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIF 384
           L        K    +Y                 S   HPQ  +CF+ +V DDL    GI 
Sbjct: 169 LNWAYGIDGKSQGHYY-----VDPSTGKLVKSTSAYEHPQPHACFIQSVDDDLVNEGGIM 223

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
                 A L KY  G G +++ +RG    +    GKS G++ FLK+ +  A A+  G   
Sbjct: 224 DLWVREARLFKYGSGTGTNFSNLRGENEPLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTT 282

Query: 444 RKGAVCAYLETWHIDVEEFLD-----------------------------LRKNTGDDR- 473
           R+ A    L+  H D+E F+D                               +  G+DR 
Sbjct: 283 RRAAKMVCLDVDHPDIENFIDWKVTEEKKVASLVTGSMLNNRHLNAIMSACYEMEGEDRF 342

Query: 474 --------RRTHDMNTANWIPDLFMKRVTQNA--------------GWTLFSPDEVSDLH 511
                   ++T        IPD ++KRV   A               W   + + VS  +
Sbjct: 343 NPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLARQGYKEILFEELTTDWQSDAYNTVSGQN 402

Query: 512 DLYG----KEFEIAYENYE------------RQADRGEIKVFRKISAVALWRKMLTMLFE 555
                    EF  A E  +             + +  + K  + + A  LW K+    + 
Sbjct: 403 SNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAKVEGRKAKPSQTLRARELWEKISYAAWA 462

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           +  P   +    N        G +++SN C+E     ++     CNL S NL        
Sbjct: 463 SADPGTQYHTTINEWHTCPEDGPINASNPCSEYMFLDNT----ACNLASANLQKFVNLET 518

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD +      +    +L+  + +     ++  + ++  R +GLG     S L +L IP
Sbjct: 519 LNFDVEGFRYLCKLWTIILEISVTMAQFPSKEIAELSYKFRTLGLGYANLGSVLMVLGIP 578

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGVF 721
           Y S +A+ I       +   A + S E+A+E+G +  +  +                   
Sbjct: 579 YDSQQAMAITGAISSIMHMTAYATSAEMAKEQGPFVGYAKNQKHMLRVIRNHRRAAYNAP 638

Query: 722 PIDSIGLL------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             D  GL               M + ++   D      +  G RN+    IAPT TI  +
Sbjct: 639 SGDYEGLTITPIGINPAFCPSYMLKAAQEDADLALSLGEKYGFRNAQVTVIAPTGTIGLV 698

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    ++  +  + I  +  +      +
Sbjct: 699 MDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPYGLKKLGYSPSEIEAIVNYCKGHATL 758

Query: 835 ERIP 838
              P
Sbjct: 759 NGAP 762



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 810 LKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------IDPMWLIES 859
           L+      E +     Y  G+  I N   + +    +   A +        +     I  
Sbjct: 825 LEHLGFTKEDINKANDYVCGTMTIENAPFLKEKDYPVFDCANKCGKYGKRFLSYESHIRI 884

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            +  Q +I  A S  +   +E   + +   Y  +W M +K     R  S  S   +++
Sbjct: 885 MAAAQPFISGAISKTINLPEEAVIEDIKNAYFLSWKMMIKANALYRDGSKLSQPLNSV 942


>gi|332981533|ref|YP_004462974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
 gi|332699211|gb|AEE96152.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
          Length = 1112

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 178/413 (43%), Gaps = 52/413 (12%)

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +++      +   +  + + G   +              V    ++ +C           
Sbjct: 592 YKRAINRERFIATVDEIVQAGEKGV-------YDVQIPGVNAFDANGICVHNCGEQPLLP 644

Query: 597 TAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              CNLGSINLL+          + +Y KLA  + TAV  LDNVID+N + + + +K   
Sbjct: 645 YESCNLGSINLLSVVQPVDGDKWEINYAKLARIVDTAVHFLDNVIDVNLYPLPEIEKMTK 704

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MG+   L  L IPY S EA+E+  + M+FI   A   S ELA++RGA+ ++
Sbjct: 705 RMRKIGLGVMGWADMLFRLGIPYNSDEAIELGTKLMKFICDRARQQSAELAEQRGAFPAY 764

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W                                     K + +RN+    IAPT +
Sbjct: 765 EQSIWKD-----------------------------------KGLKVRNATVTTIAPTGS 789

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I GVS  I+P +   +V++ M       V+       KQR  +   ++  +  H GS
Sbjct: 790 ISIIAGVSSGIEPLFAISFVRNVMDNTQLPEVHPIFEEVAKQRGFYSAELMRQI-AHQGS 848

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIY 889
           I +++ IPDD+K++  TA +I P + +   +  Q++ D A S  + + +  + + +  +Y
Sbjct: 849 IQHMDGIPDDVKRVFVTAHDISPEYHVRMQAAFQRYTDNAVSKTVNFPNSATQEDVRQVY 908

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             A+ +G K     R  S  +   +   G   K+ A  +  P  +      P 
Sbjct: 909 ILAYKLGCKGVTIYRDGSRETQVLNI--GDKDKVGADVMIQPEPTIIPRPRPE 959



 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 38/304 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFY 343
                  +++L  RY      G+ IE P+  F RVA  +A  ++      +  K   EFY
Sbjct: 1   MKLTDNAIKVLEKRYLAKDEQGNIIETPEQMFRRVAHHVAQADSIYDPKVDVSKTEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++++   F+ ++PTL N+G    QLS+CF+  + D + GIF +++  A++ K  GG G  
Sbjct: 61  DIMTELEFLPNSPTLMNAGRPLGQLSACFVLPIEDSMEGIFDSVKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K+  D      + N +  I + FM+ V ++  + L  P                   
Sbjct: 181 QCKKDNSD----ITNFNISVGITEKFMEAVEKDEEYDLIDPHTGK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       + R++ A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 222 ------------ITRRLRARQVFDLIVDMAWHNGEPGIVFLDRINKDNVVPALGEIESTN 269

Query: 584 LCTE 587
            C  
Sbjct: 270 PCIT 273


>gi|194333550|ref|YP_002015410.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris aestuarii DSM 271]
 gi|194311368|gb|ACF45763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prosthecochloris aestuarii DSM 271]
          Length = 1156

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/575 (21%), Positives = 213/575 (37%), Gaps = 97/575 (16%)

Query: 363 TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  +    G
Sbjct: 175 YSRPQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTNFSNLRSRGEKLS-GGG 233

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +    D       
Sbjct: 234 TSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIEWKSREEDKVASLVS 293

Query: 479 MN----------------------------------TANWIPDLFMKRVTQ--NAGWTLF 502
            +                                      +P  ++ RV      G+T  
Sbjct: 294 GSRVCSKFLKAIVDEAVSNGTDRMTNPKLNTLVVNALGRGVPMSYIVRVISLVEQGYTTL 353

Query: 503 SPDEVSDLHD------LYGK----------EFEIAYENYERQA--DRGEIKVFRKISAVA 544
             DE +  ++      + G+          EF  A EN +     +R   K  R + A  
Sbjct: 354 DFDEYTTHYESEAYQTVSGQNSNNTVRVTNEFMKAVENDDLWVLRERTTGKSARSVRARD 413

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW K++   ++   P + F    N        G ++ SN C+E        +   CNL S
Sbjct: 414 LWEKIVMSAWKCADPGLQFDTTINEWHTCPASGRINGSNPCSEYMFL----DDTACNLAS 469

Query: 605 INLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL         +   D L    R    VL+  + +     E   + ++  R +GLG   
Sbjct: 470 LNLAHFLDVEKGEIKVDDLLHATRLWTIVLEISVLMAHFPSEDIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG--------- 713
             + L ++ IPY SP+A+ IA      I+  A  AS E+A + G Y+ F+          
Sbjct: 530 LGTILMVMGIPYDSPKALAIAGAISALITGGAYRASAEMAADLGPYARFRENEKDMLRVI 589

Query: 714 ----------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                     S  +     +   G+ +E      + +     WD+   + +  G RN+  
Sbjct: 590 RNHRRAAHNLSEDEYENLLVKPRGIDSEYCPG-YLFKAVGSVWDDALAKGEKDGFRNAQV 648

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI  +    +  I+P +  +  K    G +  + +  V++  +R  + +  I 
Sbjct: 649 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALKRLGYSDTDID 708

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +++ +    G     P            I   WL+
Sbjct: 709 EIEKYCKGYGTFVGCP-----------TISHQWLV 732



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA-- 848
            ++      +N    N L+      E   +   Y  G+  I     +  +   +   A  
Sbjct: 769 HSLGFSEEQLNDPHFNMLEALGASSEDARAANDYVCGTMTIEGAPHLRLEHLPVFDCAGT 828

Query: 849 ------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
                   I PM  +   S  Q ++  A S  + +    + +++  +Y  AW   +K   
Sbjct: 829 CGLKGVRYIKPMAHVRMMSAVQPFVSGAISKTVNMPPTATVEEISDVYLTAWQSMVKAIT 888

Query: 902 YLRSRSATSVEKS 914
             R  S  S   S
Sbjct: 889 IYRDGSKLSQPLS 901


>gi|182678921|ref|YP_001833067.1| ribonucleotide-diphosphate reductase subunit alpha [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634804|gb|ACB95578.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1236

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 131/683 (19%), Positives = 236/683 (34%), Gaps = 136/683 (19%)

Query: 316 MPQAFFMRVAMG---------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG---- 362
             +  F R+A               E + +    E   +L+S     ++P  FN+G    
Sbjct: 105 SAKQVFDRLAGAWTYWGWKGSYFDTEEDAQAFYDELRFMLASQMVAPNSPQWFNTGLFWA 164

Query: 363 --------------------------TRHPQLSSCFLTTVPDDLY---GIFGALQENAML 393
                                       HPQ  +CF+ +V DDL    GI       A L
Sbjct: 165 YGIDGPSQGHYYVDPFDGELVQSQSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARL 224

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
            KY  G G++++ +RG    +    GKS G++ FLK+ +  A A+  G   R+ A    +
Sbjct: 225 FKYGSGTGSNFSKLRGENEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVV 283

Query: 453 ETWHIDVEEFLDLRKNT-------------------------------GDD--------- 472
           +  H D+E+++D +                                  GDD         
Sbjct: 284 DADHPDIEDYIDWKMREEQKVAALVTGSKTLKKALKAIVRACVNCEGPGDDCFNPEKNPA 343

Query: 473 RRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG---------- 515
            +R   +    ++PD  +K+  Q       +     F+ D  S+ +              
Sbjct: 344 LKREIKLARRAFVPDAAIKKALQLVRQGETDIDVEAFTTDWDSEAYLTVSGQNSNNSVRV 403

Query: 516 -KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
             +F  A E         R + K  + + A  LW K+    + +  P + F    N    
Sbjct: 404 TDDFLRAVEQDGDWNLTRRLDGKPHKTLPARELWEKIGRAAWASADPGLQFHTTINDWHT 463

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVR 630
               G + +SN C+E        +   CNL S+NLL         FD +     +R    
Sbjct: 464 CPADGPIVASNPCSEYMFL----DDTACNLASLNLLQFRNTQTKIFDVEAYEHAVRLWTI 519

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           VL+  + +      +    ++  R +GLG       L    I Y S +   I       +
Sbjct: 520 VLEISVMMAQFPSREIALLSYEFRTLGLGFANIGGLLMSSGIAYDSAQGRAICGALSAIM 579

Query: 691 SFHAISASVELAQERGAYSSFKGS------------LWDQGV-----------FPIDSIG 727
           +  A + S E+A + G +S ++ +               +G             P+D + 
Sbjct: 580 TGIAYATSAEMAGQLGPFSGYQRNATGMLRVMRNHARAARGESTGYESLDILPVPLDHVA 639

Query: 728 LLA-EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
           L A       A+ R + + WD+     +  G RN+    +APT TI  +    +  I+P 
Sbjct: 640 LDANPALGAPALRRHAVMAWDKAVALGERHGFRNAQVSVVAPTGTIGLVMDCDTTGIEPD 699

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +  +  K    G +  + +  V E  +   + E+ I++++ +     ++   P  +    
Sbjct: 700 FALVKFKKLAGGGYFKIINRAVPEGLRALGYPESQIAEIEAYAVGHASLSNAP-GINHAS 758

Query: 846 ATAFEIDPMWLIESASRRQKWID 868
            TA    P  + +  +      D
Sbjct: 759 LTARGFTPEKIADVEAALASAFD 781



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATS 910
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+ +  
Sbjct: 869 ESHIRMMAASQPFISGAISKTINMPNEATIEDCKNAYLLSWRLGLKANALYRDGSKLSQP 928

Query: 911 VEKSTLKGVDGKLNAV 926
           +    L+  + +    
Sbjct: 929 LNSQLLQDDEDETEEA 944


>gi|110680377|ref|YP_683384.1| ribonucleotide-diphosphate reductase subunit alpha [Roseobacter
           denitrificans OCh 114]
 gi|109456493|gb|ABG32698.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter denitrificans OCh 114]
          Length = 1214

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 119/601 (19%), Positives = 213/601 (35%), Gaps = 105/601 (17%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPV 407
           +     T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +
Sbjct: 171 YKTGKLTRSKSSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSL 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
                      G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +
Sbjct: 231 -RGEGEGLSGGGRSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWK 289

Query: 467 KNTGDD-----------RRRTHDMNTA-----------------------------NWIP 486
                             ++ + +  A                               IP
Sbjct: 290 VVEEQKVASIVAGSKMHEQKLNLLFEAIKTWDGAEEDAYDPSKNAALKQAIREAKKVAIP 349

Query: 487 DLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ---- 528
           + ++KRV                +  W   +   VS  +         A+     +    
Sbjct: 350 ETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLKAVEEDADW 409

Query: 529 --ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +R + KV + I A  LW K+    +    P I + D  N        G +  SN C+
Sbjct: 410 DLINRVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGEIRGSNPCS 469

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E        +   CNL S+NLL    + +F  +      R     L+  + +     ++ 
Sbjct: 470 EYMFL----DDTACNLASMNLLTFLKDGEFQIEDYMHAARLWTVTLEISVMMAQFPSKEI 525

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L  +   Y S E   I       ++  + + S E+A E G
Sbjct: 526 AQRSYDFRTLGLGYANIGGLLMNMGHSYDSAEGRAICGALTAIMTGVSYATSAEMAGELG 585

Query: 707 AYSSFKGSL------------WDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +  +  +                G         ++ + L  +   +  M   +R  WD+
Sbjct: 586 PFPGYAKNADNMLRVIRNHRHAAYGKVGGYEDLSVNPVPLDYKSCPDARMIEVARGAWDQ 645

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 646 ALELGQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSV 705

Query: 808 NELKQRDLWDEAMISDLKYH---DGSIGNIERI-----------PDDLKKIH---ATAFE 850
               ++  +  A I ++  +     +IGN   I           P++L KI    A+AF+
Sbjct: 706 PGALEKLGYGSAQIEEIVSYAVGHATIGNAPGINHTSLAGHGFGPNELAKIDAALASAFD 765

Query: 851 I 851
           I
Sbjct: 766 I 766



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW----- 855
           N    + L+      + +   +D      ++     + D+   I   A            
Sbjct: 792 NDPSFDLLRHLGYSKKDIEAANDHVCGTMTLEGAPFLKDEHLSIFDCANPCGKKGKRFLS 851

Query: 856 ---LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSAT 909
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    Y   S+ + 
Sbjct: 852 VDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  S ++  +     +     +     L 
Sbjct: 912 PLAASLVEDDEDAAETLESGTAHEKAQVLA 941


>gi|37651591|ref|NP_932465.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
 gi|34732891|gb|AAQ81429.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
          Length = 570

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 165/627 (26%), Positives = 257/627 (40%), Gaps = 120/627 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+GT      SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEA-EERYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V     R+G    Y++  H D  E                                 
Sbjct: 163 KTKVA-AAGRRGEWAGYVDFSHGDFWEL-------------------------------- 189

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+   R    + R       W +++ M  
Sbjct: 190 --QGYVLKNPASAH-----VGWVFEK--EDYEKLKARDPEYMAR-------WNELMYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G  + SS LCTEI L S    T  C L S+N+    
Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ +VR LD+V         +++  T+ KA +     RA+GLG +G
Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +  I + S  A  + ++    I   A   S ELA+E G     KG+        
Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
                                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE--AMISDLK-YHDGSIGNIERIP 838
           ++P   N +++ + +GDF   N  L   LK R    E   ++ D+  YH+GS+ +++ + 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896
           D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++    
Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543

Query: 897 LKTTYYLRSRSATSVE--KSTLKGVDG 921
           LK+ YYLRS         KS     +G
Sbjct: 544 LKSLYYLRSERGVKASSGKSDCLACEG 570


>gi|294828088|ref|NP_712541.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
 gi|302393704|sp|Q8F3P1|NRDJ_LEPIN RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|293385936|gb|AAN49559.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 1201

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 144/724 (19%), Positives = 246/724 (33%), Gaps = 115/724 (15%)

Query: 215 NYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           ++++V    L +K  RR+ +    KK Q+    E          +      + R   E+ 
Sbjct: 46  DWSQVAVDILAQKYFRRKGVPKYLKKVQEDGIPEWLQKSIPDTEKLESLKPEDRFGGETS 105

Query: 274 MDFDLVYLANDLKYERDFAFEYLG----LQILYDR--YFLHINGSRIEMPQAFFMRVAMG 327
                  LA    Y   + ++Y       +I YD   Y L    +    PQ F      G
Sbjct: 106 ALEVFHRLAGCWTYW-GYKYKYFSDEESAKIFYDEIVYMLATQMAAPNSPQWFN----TG 160

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIF 384
           L        K    +Y                 S   HPQ  +CF+ +V DDL    GI 
Sbjct: 161 LNWAYGIDGKSQGHYY-----VDPSTGKLVKSTSAYEHPQPHACFIQSVDDDLVNEGGIM 215

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
                 A L KY  G G +++ +RG    +    GKS G++ FLK+ +  A A+  G   
Sbjct: 216 DLWVREARLFKYGSGTGTNFSNLRGENEPLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTT 274

Query: 444 RKGAVCAYLETWHIDVEEFLD-----------------------------LRKNTGDDR- 473
           R+ A    L+  H D+E F+D                               +  G+DR 
Sbjct: 275 RRAAKMVCLDVDHPDIENFIDWKVTEEKKVASLVTGSMLNNRHLNAIMSACYEMEGEDRF 334

Query: 474 --------RRTHDMNTANWIPDLFMKRVTQNA--------------GWTLFSPDEVSDLH 511
                   ++T        IPD ++KRV   A               W   + + VS  +
Sbjct: 335 NPKKNSSLKKTIQDAKKVLIPDNYIKRVIDLARQGYKEILFEELTTDWQSDAYNTVSGQN 394

Query: 512 DLYG----KEFEIAYENYE------------RQADRGEIKVFRKISAVALWRKMLTMLFE 555
                    EF  A E  +             + +  + K  + + A  LW K+    + 
Sbjct: 395 SNNSIRLTNEFMAAVEQDQPWNLYFRTEKEKAKVEGRKAKPSQTLRARELWEKISYAAWA 454

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           +  P   +    N        G +++SN C+E     ++     CNL S NL        
Sbjct: 455 SADPGTQYHTTINEWHTCPEDGPINASNPCSEYMFLDNT----ACNLASANLQKFVNLET 510

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD +      +    +L+  + +     ++  + ++  R +GLG     S L +L IP
Sbjct: 511 LNFDVEGFRYLCKLWTIILEISVTMAQFPSKEIAELSYKFRTLGLGYANLGSVLMVLGIP 570

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGVF 721
           Y S +A+ I       +   A + S E+A+E+G +  +  +                   
Sbjct: 571 YDSQQAMAITGAISSIMHMTAYATSAEMAKEQGPFVGYAKNQKHMLRVIRNHRRAAYNAP 630

Query: 722 PIDSIGLL------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             D  GL               M + ++   D      +  G RN+    IAPT TI  +
Sbjct: 631 SGDYEGLTITPIGINPAFCPSYMLKAAQEDADLALSLGEKYGFRNAQVTVIAPTGTIGLV 690

Query: 776 CGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               +  I+P +  +  K    G +  + +  V    ++  +  + I  +  +      +
Sbjct: 691 MDCDTTGIEPDFTLVKFKKLAGGGYFKIINQSVPYGLKKLGYSPSEIEAIVNYCKGHATL 750

Query: 835 ERIP 838
              P
Sbjct: 751 NGAP 754



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 810 LKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------IDPMWLIES 859
           L+      E +     Y  G+  I N   + +    +   A +        +     I  
Sbjct: 817 LEHLGFTKEDINKANDYVCGTMTIENAPFLKEKDYPVFDCANKCGKYGKRFLSYESHIRI 876

Query: 860 ASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            +  Q +I  A S  +   +E   + +   Y  +W M +K     R  S  S   +++
Sbjct: 877 MAAAQPFISGAISKTINLPEEAVIEDIKNAYFLSWKMMIKANALYRDGSKLSQPLNSV 934


>gi|154253737|ref|YP_001414561.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154157687|gb|ABS64904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 1244

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/613 (19%), Positives = 222/613 (36%), Gaps = 98/613 (15%)

Query: 318 QAFFMRVAMGLALKETEKE--KRAVEFYN----LLSSFHFMCSTPTLFNSGT--RHPQLS 369
           +  FM  A  +A   + +         Y         +    +T     + T   +PQ  
Sbjct: 139 EHRFML-AAQIAAPNSPQWFNTGLHWAYGIDGPAQGHWRTDPATGETARTATAYEYPQPH 197

Query: 370 SCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +CF+ +V DDL    GI       A L KY  G G++++ +RG         GKS G++ 
Sbjct: 198 ACFIQSVNDDLVNENGIMDLWVREARLFKYGSGTGSNFSDLRGE-DEKLSGGGKSSGLMS 256

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR------------------- 466
           FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +                   
Sbjct: 257 FLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEDFINWKVKEEQKVAALVTGSKINQK 316

Query: 467 ------------KNTGD---DRRRTHDMNTANW------IPDLFMKRVTQNA-------G 498
                       +  GD   D ++   +           +P+ +++RV Q A        
Sbjct: 317 HLNAIMRACVNCEADGDACFDPKKNPALKREVLAARKAHVPENYVQRVIQFAKQGYDEID 376

Query: 499 WTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQA--DRGEIKVFRKISAVAL 545
           + ++  D  S+ +                +F  A E     +   R   +  + + A  L
Sbjct: 377 FRVYDTDWDSEAYLTVSGQNSNNTVRVTDDFLRAVEEDAEWSLKSRLTGEATKTLPAREL 436

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W ++    + +  P I +    N        G + +SN C+E        +   CNL SI
Sbjct: 437 WEQVGHAAWASADPGIQYHTTINDWHTCPASGPIRASNPCSEYMFL----DDTACNLASI 492

Query: 606 NLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+    A+ +FD +     ++    VL+  + +      +  + +  +R +GLG     
Sbjct: 493 NLMQFRDADGRFDVEAFEHAVKLLTIVLEISVLMAQFPSREIAERSFRYRTLGLGFANIG 552

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---------- 714
             L    + Y S EA  +A      ++  + + S ++A+E GA+  +  +          
Sbjct: 553 GLLMSCGLAYDSAEARALAGAISAIMTGVSYATSAQMAKELGAFEGYAENSAHMLRVMRN 612

Query: 715 --LWDQGV------FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                 G         +  + L A    +  +   +R  WD      +  G RN+    I
Sbjct: 613 HARAAHGYNGGYEDLSVYPLALDAANCPQADLVDHARASWDLAVSMGERYGYRNAQATVI 672

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI  +    +  I+P +  +  K    G +  + +  V +  +   +D A I  + 
Sbjct: 673 APTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPQALRTLGYDAAAIERIV 732

Query: 826 YHDGSIGNIERIP 838
            +    G +   P
Sbjct: 733 NYAVGFGTLANAP 745



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + D+   +   A          +     I   +  Q +I  A S  + + +  
Sbjct: 830 TLEGAPGLKDEHLPVFDCANPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMANAA 889

Query: 881 SGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           + +     Y  +W +GLK    Y   S+
Sbjct: 890 TVEDCKESYMLSWKLGLKANALYRDGSK 917


>gi|47458851|ref|YP_015713.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mobile 163K]
 gi|47458179|gb|AAT27502.1| ribonucleotide reductase [Mycoplasma mobile 163K]
          Length = 842

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 137/679 (20%), Positives = 253/679 (37%), Gaps = 117/679 (17%)

Query: 312 SRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
             +E   +    RV   ++  E++K   A+     L+  + + +   L+ +G++      
Sbjct: 123 KPLEIYYEQIAKRVGFAISKDESKKHIEAITK--ELADKNIIPAGRILYGAGSKKEVTFF 180

Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +C++  +  D   GI     +   +    GG+G + + +R   A      GKS G + +L
Sbjct: 181 NCYVMPMIQDSREGISKHRGQIMEIMSRGGGVGTNGSSLRPKDAIAISVGGKSSGAVSWL 240

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN-------- 480
              +     V QGG R+GA    L  WH D+ EF+  +    +  +   D          
Sbjct: 241 NDISQLTNLVQQGGSRRGAQMIMLGVWHPDIVEFIISKMQKPNILKFIKDKFHHPLIKEA 300

Query: 481 -----------------------------TANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
                                            +    +K+      + +  P  +S  +
Sbjct: 301 VNFKLNFRPLSQEKQMNIDAILAHKNLMPHGVVVNAENLKKA--GGEYEINDPGFLSGAN 358

Query: 512 DLYG--KEFEIAYENYE--RQADRGEIKVFRKISA--VALWRKM--LTMLFETGHPWITF 563
                  +F  A +N E          K  ++  A     W  +  +    + G+P   +
Sbjct: 359 ISVALTSDFMDAVKNNEMYELRFPDLEKFTKEQKAFYDKEWHNIGDVKEWGKLGYPVKVY 418

Query: 564 -----------KDPCNIRSPQQHVGVVHSSNLCTE--------ITLNSSSEE----TAVC 600
                       + C+  S +  V  +  +N  T         +  N   E+     +VC
Sbjct: 419 STIKAKELWDLINLCSTYSAEPGVFFIDRANELTNAQSYGQKVVCTNPCGEQPLAPYSVC 478

Query: 601 NLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NL +INL         + DY KL +T++  +R  DN+ID   + +++ K      R +GL
Sbjct: 479 NLAAINLANFVDKHTGKIDYPKLENTVKLGIRFQDNIIDKTYYFLKENKDQALGERRVGL 538

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG    L    + Y S EA ++ D+  E I+  A   S+EL +E+G++  F      +
Sbjct: 539 GVMGLHDMLIWSGLKYGSKEANKVVDKVFETIATSAYLTSIELGKEKGSFPFF---TSVE 595

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                  +  L ++  +                  KT  +RNS+ + IAPT +   + GV
Sbjct: 596 RFLQSGYVKKLPQIVIDAFK---------------KTKAIRNSHLLTIAPTGSTGTMAGV 640

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  ++P Y   Y +S   G F  V+  +V E K+   W                      
Sbjct: 641 STGLEPYYAFKYFRSGRLGKFIEVDQDIVAEWKKIKNWPADK------------------ 682

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
             L +I ++A ++ P   ++  +  Q+WID + S  +   +  S + ++ ++   +  G 
Sbjct: 683 -ALPEIFSSAMDLKPEEHVKVQNLIQRWIDSSISKTVNAPKGYSVEDVEKVFMSLYDGGS 741

Query: 898 K--TTYYLRSRSATSVEKS 914
           K  T Y   SR A  +  S
Sbjct: 742 KGGTVYVDGSRDAQVLSLS 760


>gi|282598965|ref|YP_003358882.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
 gi|257219035|gb|ACV50050.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
          Length = 711

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/660 (24%), Positives = 272/660 (41%), Gaps = 109/660 (16%)

Query: 305 YFL-HINGSRIEMPQAFFMRVAMG----LALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           Y +        E  Q    R A+     LA         A   Y+  S   F+ ++P   
Sbjct: 26  YLITQHYSRPGETIQQTIARAAVAWSSNLA--------HAQRLYDYASKDDFIWASPAFS 77

Query: 360 NSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           N+            SCFL  VPD + G+     E ++L+   GG+G ++  +R +     
Sbjct: 78  NATLPGEKIRAMPISCFLPDVPDSVPGLLYQKAELSLLSVLGGGVGQNFGGIRSVSD--- 134

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               K+ G IPF+   +   +A  QG  R+GA+ A L   H D  EF+ +R  TGD  R+
Sbjct: 135 ----KAPGPIPFIAENDSAILAWKQGKIRRGALSANLGVTHPDTMEFMRIRVPTGDIERK 190

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
           + +++    + D +M+ V            E   L D  GK+                  
Sbjct: 191 SLNIHHGFNVTDEYMQAVVDGI--------ETLPLIDPTGKQVG---------------- 226

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGVV-HSSNLCTEITLNS 592
               ++    +R+M+T+   TG P++ F D            +G+   ++N+CTEITL +
Sbjct: 227 ---SMNPREHFREMVTVRSRTGEPFMYFIDRAQEYLSLPQKLIGMACKATNICTEITLAA 283

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA------ 646
           + + T VC L SIN   +     +        +   + +LDN+I+     +EK       
Sbjct: 284 TKDRTPVCCLCSINAERYEDFKPY----YQEMVSDLIEMLDNIIEFFVQNVEKVAEGYAD 339

Query: 647 --------------KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                         KKS    R++GLG+MG    L    + +A  ++ E   E    +  
Sbjct: 340 QLDRDLIRLLVQKVKKSAECERSVGLGVMGLAYMLQRADMVFAGEDSREYELEFFRQLKD 399

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            + +AS  L  ERG                   I    E   EL +              
Sbjct: 400 FSHAASCRLGIERGVPPD---------------IQAYLEKCKELGIEPDPYW-------- 436

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
              +  RN + +AIAP A  + I   S SI+  Y N+Y +   +G F V N +L   L+ 
Sbjct: 437 ---VNRRNLHLLAIAPNANSSVILNTSASIEFMYSNVYSREMRTGTFEVRNRYLEKLLES 493

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    E + + +K   GS+  ++ + +  K+++A   E++ M ++  A  RQ +I QAQS
Sbjct: 494 QGRNTEEVWNQIKADSGSVKGLDFLTEHQKRVYAVPEEMNMMDVVVRAGERQVYICQAQS 553

Query: 873 LNLYLDEPSGKKLDF---IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           LNL+   P G  ++F   ++  AW +G+K+ YY ++ S   +EK + K    KL     T
Sbjct: 554 LNLFF--PPGSDINFVMAVHILAWKVGVKSLYYYKTESEVKIEKPSDKTEREKLTQDERT 611


>gi|66391912|ref|YP_238837.1| nrdA [Aeromonas phage 31]
 gi|62114749|gb|AAX63597.1| nrdA [Aeromonas phage 31]
          Length = 570

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/627 (26%), Positives = 256/627 (40%), Gaps = 120/627 (19%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  +  F RVA  LA  +   E     +++LL S     +TP   N+G       SC  +
Sbjct: 44  ETVRGAFRRVASTLAKHDIRPEA-EERYFDLLWSGKLAMATPVFCNTGPDRGMPVSCAGS 102

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D +   +    E AMLAK   G  +    +R  G+ I  ++ K+ G++P      +T
Sbjct: 103 YVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTSHNKADGLVPVFDNFVNT 162

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V     R+G    Y++  H D  E                                 
Sbjct: 163 KTKVA-AAGRRGEWAGYVDFSHGDFWEL-------------------------------- 189

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              G+ L +P          G  FE   E+YE+   R    + R       W +++ M  
Sbjct: 190 --QGYVLKNPASAH-----VGWVFEK--EDYEKLKARDPEYMAR-------WNELMYMRA 233

Query: 555 ETGHPWITFKDPCNIRSPQ--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            TG  ++      N  +PQ  ++ G  + SS LCTEI L S    T  C L S+N+    
Sbjct: 234 RTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSL-- 291

Query: 612 ANNQFDYDKL-ASTIRTAVRVLDNVI--------DINCHTIEKAKKSNHTHRAIGLGLMG 662
                 +D++ A  I+ +VR LD+V         +++  T+ KA +     RA+GLG +G
Sbjct: 292 ------WDEITADDIKWSVRFLDSVCSEFLAKAKELSYDTLHKAIRFTEKARALGLGTLG 345

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F + L +  I + S  A  + ++    I   A   S ELA+E G     KG+        
Sbjct: 346 FHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGEPEWCKGT-------- 397

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQS 781
                                             GMRN+  + IAP  + A + G VSQ 
Sbjct: 398 ----------------------------------GMRNATLITIAPNMSSALLAGGVSQG 423

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE--AMISDLK-YHDGSIGNIERIP 838
           ++P   N +++ + +GDF   N  L   LK R    E   ++ D+  YH+GS+ +++ + 
Sbjct: 424 VEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEIQELMEDIATYHNGSVQHLDILT 483

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG-- 896
           D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+      + +     +A++    
Sbjct: 484 DHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLFFSADEKESVIASVHRAFMDDPR 543

Query: 897 LKTTYYLRSRSATSVE--KSTLKGVDG 921
           LK+ YYLRS         KS     +G
Sbjct: 544 LKSLYYLRSERGVKASSGKSDCLACEG 570


>gi|119485473|ref|ZP_01619801.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457229|gb|EAW38355.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 405

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 195/456 (42%), Gaps = 70/456 (15%)

Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           M+RV     WTL  P EV      +L +L+G++FE AY+  E Q+    + +++KI+A  
Sbjct: 1   MRRVIAKEEWTLVDPFEVRTKLGIELAELWGEKFEFAYQEIE-QSLDKTLTLYKKINARE 59

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           L++ M+    ETG P++ FKD  N  +P  H G +   NLC E   N +  + A     +
Sbjct: 60  LFKTMMRSQVETGMPYLWFKDTSNRANPNSHEGYIPGGNLCQESWSNVAPGKEAHTCNLN 119

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
              LA+  + +     LA     AVR+LDN I++ C   E +K  N  +R IG+G MG  
Sbjct: 120 SLNLANLEDGE-----LAEICEIAVRLLDNTIELTCPPFEDSKVHNIKYRTIGVGAMGLA 174

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y     ++      E + ++    S+ELA+ERG+Y +F GS W QG     
Sbjct: 175 DWLAKNKRSYRD---LDTISHLFEDLGYYCTKTSMELAKERGSYPAFAGSSWSQGKL--- 228

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              + A+  +    N  S+  W +L   ++  G+RNS+  AIAP  + + + G + SI P
Sbjct: 229 ---IGAKPVEWFLENAHSKERWQQLSLDIQKYGIRNSHITAIAPNTSSSLVQGCTASILP 285

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y   +      G   +   F+     +   W                            
Sbjct: 286 CYSRFFYDKWAKGTVPIAPPFI-----RDSFW---------------------------F 313

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNL---------YLDEP----SGKKLDFIYRQ 891
           +     ++   ++++ +  QKWID   S+ L         + DEP      K +      
Sbjct: 314 YPENKTLNQQTVVKAVATIQKWIDTGISMELIFNLNQGVYFPDEPERSIKAKDIFDTLVM 373

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           AW  G K  YY+R+     V++ + K  D    A  
Sbjct: 374 AWQEGCKAIYYIRT-----VQRDSFKEADETCTACA 404


>gi|306825285|ref|ZP_07458627.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432721|gb|EFM35695.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 421

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 97/397 (24%), Positives = 168/397 (42%), Gaps = 21/397 (5%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   L +   +F L  L   +K ++
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKINYLIEHNYIETAFLKKYRPEF-LEELHQFIK-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y++Y L  N     + ++   RV           E  A++  N +  
Sbjct: 90  NFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +     +I  E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGVPFNYIDIT-EKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P++   D  N  +     G +  SNLC+E
Sbjct: 328 LVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRAN--PVDGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFA 612
           I                       CNLGS N++    
Sbjct: 385 ILQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMT 421


>gi|329729596|gb|EGG65997.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 493

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 182/440 (41%), Gaps = 32/440 (7%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 49  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 108

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 109 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 165

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 166 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 225

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 226 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 285

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 286 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 343

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 344 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 403

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 404 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 458

Query: 653 HRAIGLGLMGFQSALHLLHI 672
             ++GLG+M     L    +
Sbjct: 459 LHSVGLGVMNLHGYLAKNKL 478


>gi|124027730|ref|YP_001013050.1| ribonucleotide reductase, alpha subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978424|gb|ABM80705.1| predicted ribonucleotide reductase, alpha subunit [Hyperthermus
           butylicus DSM 5456]
          Length = 991

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/545 (23%), Positives = 207/545 (37%), Gaps = 121/545 (22%)

Query: 283 NDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           +++  E D  F Y  +++L  RY +    G  +E P     RVA G + +        V+
Sbjct: 61  DEICPE-DKGFTYNAIRVLLARYMVRNEYGVPMETPSMVMARVAWGFSTRVDP-----VK 114

Query: 342 FYNLLSSFHFMCSTPT--LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            Y LL +  FM ++PT         +  LS+C++T V DD+  I  A    AM  K+ GG
Sbjct: 115 LYRLLIARKFMFNSPTLFNMYVDGAYGTLSACYVTPVYDDMKAIMDAATVQAMTFKWGGG 174

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL------- 452
            G  ++ +R     +  T G++ G + F+++ +     V QGGKR+GA    +       
Sbjct: 175 QGFSFSELRPRWDIVRSTGGQASGPLSFMQIYDMVTETVKQGGKRRGANMGIMHAWHPDI 234

Query: 453 -----ETWH-------IDVEEFLDLRKNTGDDRRR------------------------- 475
                  WH         ++  +D  K   +   R                         
Sbjct: 235 YNPHFNPWHALRNMLPPQLKALIDTTKRLIEHLEREGYEIDPVYKEIVMRLSEEGWETVE 294

Query: 476 ----------------THDMNTANWIPDLFMKRVTQNAGWTLFSP------DEVSDLH-- 511
                             + N +    D FM+ + +   W + +P      D V  LH  
Sbjct: 295 DAGFIQAKEPPLQDANLTNFNISVAANDAFMQAILRGEDWWMVNPRYSDSGDGVYRLHYS 354

Query: 512 ----------------------DLYGKEFE-----------------IAYENYERQADRG 532
                                 + Y   FE                   Y  +E   ++ 
Sbjct: 355 VSRATGLGRLGELLERYPWLLENPYLNIFEDVLEEAKTKALEALKEQARYTGWETSPEQK 414

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
               ++   A  LW K++   + +G P + F D  N  +P   +G V+++N C E  L  
Sbjct: 415 NPYAWKY-PARKLWEKIVENAWASGDPGLFFPDNHNKWNPTPWLGAVYATNPCGEQPLYP 473

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  CNLGS+++  + ++ +FD  +  S I+ AV  +D VID N H   +   +N  
Sbjct: 474 FES----CNLGSMSIDKYISDGKFDLAQFMSDIQLAVDSMDAVIDFNKHPDPRQTVANKF 529

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG+MG   AL  L  PY S EAV      M  +  ++   S EL  + G   +F+
Sbjct: 530 TRKIGLGIMGLADALAKLGYPYDSEEAVAFTLIVMAALEVYSWKRSWELGAKLGHAPAFE 589

Query: 713 GSLWD 717
              +D
Sbjct: 590 CRRYD 594



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 28/191 (14%)

Query: 746 WDELKKRVKTIGMR---NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           W  LK   +++G R   N+    +APT TI+ I G S  I+P +  +Y +    G+F  V
Sbjct: 715 WKVLKAYGRSLGARAPRNTVMTTVAPTGTISIIAGTSSGIEPYFALVYRRVVAIGEFLEV 774

Query: 803 NSFLVNEL----KQRDLWDEAMI---SDLKYHDGSIG-----------------NIERIP 838
                 +L    ++ ++  +A+      +  H GS+                        
Sbjct: 775 VKPFREKLLEAARRYNVPLDAVKVVYETIGRHKGSLRWALGEVREKLIQMGIMNGFLAEV 834

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGL 897
           + L ++   + + D  + +      Q ++DQA S  + L + + K  +   Y  AWL GL
Sbjct: 835 EKLARLFTMSMDFDLWYHLAHQIAAQLYVDQAISKTINLRKDATKDEVYTAYLVAWLGGL 894

Query: 898 KTTYYLRSRSA 908
           K     R  S 
Sbjct: 895 KGVTVYRDESK 905


>gi|183221073|ref|YP_001839069.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911167|ref|YP_001962722.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775843|gb|ABZ94144.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779495|gb|ABZ97793.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 1208

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/707 (17%), Positives = 234/707 (33%), Gaps = 136/707 (19%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY------------------ERDFAFE 294
           P+Y  +  E+G+   L      D  L  L  + +Y                     + + 
Sbjct: 66  PKYLKKVSEKGIPEWLQRSVPDDEKLAALNPEDRYVGELDSKQVFHRLAGCWTYWGYKYG 125

Query: 295 YL----GLQILYDR--YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           Y       ++ Y+   + L    +    PQ F      GL        K    +Y     
Sbjct: 126 YFTEEDSARVFYEEVIFMLASQMAAPNSPQWFN----TGLHWAYGIDGKSQGHYY----- 176

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWT 405
                       S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++
Sbjct: 177 VDPKSGKLVRSASSYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFS 236

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD 464
            +R     + G    S  ++ FLK+ +  A A+  G   R+ A    L+  H D+EEF+D
Sbjct: 237 NLRAANESLSGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDMDHPDIEEFID 295

Query: 465 LRKNTGD------------------------------------------DRRRTHDMNTA 482
            +                                               + ++       
Sbjct: 296 WKVQEEKKVASLVTGSILNNRLLNDIMSACASAKQSLGEEKAYDPAANVELKKAIQKARK 355

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN 524
            ++PD ++KRV                   W   + + VS  +         EF  A E 
Sbjct: 356 AFVPDNYIKRVIDLSKQGYKDLLFEELTTDWQSEAYNTVSGQNSNNSVRITNEFMEAVEK 415

Query: 525 Y---------ERQADR---GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                     E++  R    E K  + + A  LW ++    + +  P   +    N    
Sbjct: 416 DLPFHLINRTEKENARKDGREPKAAKTLRARDLWERIANAAWNSADPGTQYHSTINEWHT 475

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRV 631
               G +++SN C+E     ++     CNL S NL+     +  FD +      +    +
Sbjct: 476 CPEDGAINASNPCSEYMFLDNT----ACNLASANLVKFLKEDGTFDVEGYRYLNKIWTII 531

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+  + +     ++  + ++  R +GLG     S L ++ IPY S EA+ +       + 
Sbjct: 532 LEISVLMAQFPSKEIAELSYKFRTLGLGYANLGSLLMIMGIPYDSQEAMAVTGAISSIMH 591

Query: 692 FHAISASVELAQERGAYSSFKGS-------------------LWDQGVFPIDSIGLLAEV 732
             A + S E+A+E G ++ ++ +                     +     I  +G+    
Sbjct: 592 MTAYATSAEMAKELGPFAGYEKNKNHMLRVIRNHRRAAYNAPKEEYEGLTITPVGINPSF 651

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYV 791
                +   ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  +  
Sbjct: 652 LPSYLL-EAAKEDSDRALELGEQYGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKY 710

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           K    G +  + +  V    ++  + +A    +  +          P
Sbjct: 711 KKLAGGGYFKIINQSVPAALKKLGYSQAEQDAIVNYCKGHATFNGAP 757



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 25/167 (14%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           ++   +  D ++ NS   N L+      + +     Y  G+  I N   I +    +   
Sbjct: 800 FLAKTLGIDPSLYNSMGFNLLETLGFSADEITQANDYVCGTMTIENAPFIKEKDLPVFDC 859

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
           A +        +     I   +  Q +I  A S  +   +E + + +   Y  +W + +K
Sbjct: 860 ANKCGKYGKRFLSYQSHIRIMAAAQPFISGAISKTINLPEEATIEDVKNAYLMSWKVMIK 919

Query: 899 --TTYYLRSR------------SATSVEKSTLKGVDGKLNAVPVTDP 931
               Y   S+            SA   ++  L+          V + 
Sbjct: 920 ANALYRDGSKLSQPLNSVFQLLSAVGEDEEELQTSSAPKTVTEVAEK 966


>gi|116328172|ref|YP_797892.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120916|gb|ABJ78959.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 1196

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 203/581 (34%), Gaps = 100/581 (17%)

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVR 408
                    S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R
Sbjct: 180 TTGKLVKSTSAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD--- 464
           G    +    GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D   
Sbjct: 240 GENEPLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWKV 298

Query: 465 --------------------------LRKNTGDDR---------RRTHDMNTANWIPDLF 489
                                       +  G+DR         ++         IPD +
Sbjct: 299 TEEKKVASLVTGSILNNRHLNAIMSACYEMEGEDRFDPKKNPSLKKNILEAKKVLIPDNY 358

Query: 490 MKRVTQNA--------------GWTLFSPDEVSDLHDLYG----KEFEIAYE-------- 523
           +KRV   A               W   + + VS  +         EF  A E        
Sbjct: 359 IKRVIDLAKQGYKEILFEELTTDWQSDAYNTVSGQNSNNSVRLTNEFMAAVEQDQPWNLY 418

Query: 524 ---NYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                E+    G      + + A  LW K+    + +  P   +    N        G +
Sbjct: 419 FRTEKEKAKFEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGSI 478

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVID 637
           ++SN C+E     ++     CNL S NL          FD +      R    +L+  + 
Sbjct: 479 NASNPCSEYMFLDNT----ACNLASANLQKFVNLETLNFDVEGFRYLCRLWTIILEISVT 534

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +     ++  + ++  R +GLG     S L +L IPY S EA+ I       +   A + 
Sbjct: 535 MAQFPSKEIAELSYKFRTLGLGYANLGSVLMILGIPYDSQEAMAITGAISSIMHMTAYAT 594

Query: 698 SVELAQERGAYSSFKGSL-------------------WDQGVFPIDSIGLLAEVRDELAM 738
           S E+A+E+G ++ +  +                     D     I  IG+         +
Sbjct: 595 SAEMAKEQGPFTGYAKNKKHMLRVIRNHRRAAYNAPSRDYENLTITPIGINPAFCPSYLL 654

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
            + ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 655 -KAAQEDADFALELGEKHGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 713

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            +  + +  V    ++  +  + I  +  +      +   P
Sbjct: 714 GYFKIINQSVPYGLKKLGYSTSEIEAIVNYCKGHATLNGAP 754



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           ++  ++     V N+   + L+      E +     Y  G+  I N   + +    +   
Sbjct: 797 FLIKDLGITKEVFNAPGFSLLEHLGFTKEEINKANDYVCGTMTIENAPFLKEKDYPVFDC 856

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
           A +        +     I   +  Q +I  A S  +   +E + + +   Y  +W M +K
Sbjct: 857 ANKCGKYGKRFLSYESHIHIMAAAQPFISGAISKTINLPEEATIEDIKDAYFLSWKMMIK 916

Query: 899 TTYYLRSRSATSVEKSTL 916
                R  S  S   +++
Sbjct: 917 ANALYRDGSKLSQPLNSV 934


>gi|116330897|ref|YP_800615.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124586|gb|ABJ75857.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 1196

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 203/581 (34%), Gaps = 100/581 (17%)

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVR 408
                    S   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R
Sbjct: 180 TTGKLVKSTSAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLD--- 464
           G    +    GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D   
Sbjct: 240 GENEPLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWKV 298

Query: 465 --------------------------LRKNTGDDR---------RRTHDMNTANWIPDLF 489
                                       +  G+DR         ++         IPD +
Sbjct: 299 TEEKKVASLVTGSILNNRHLNAIMSACYEMEGEDRFDPKKNPSLKKNILEAKKVLIPDNY 358

Query: 490 MKRVTQNA--------------GWTLFSPDEVSDLHDLYG----KEFEIAYE-------- 523
           +KRV   A               W   + + VS  +         EF  A E        
Sbjct: 359 IKRVIDLAKQGYKEILFEELTTDWQSDAYNTVSGQNSNNSVRLTNEFMAAVEQDQPWNLY 418

Query: 524 ---NYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                E+    G      + + A  LW K+    + +  P   +    N        G +
Sbjct: 419 FRTEKEKAKFEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGSI 478

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVID 637
           ++SN C+E     ++     CNL S NL          FD +      R    +L+  + 
Sbjct: 479 NASNPCSEYMFLDNT----ACNLASANLQKFVNLETLNFDVEGFRYLCRLWTIILEISVT 534

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +     ++  + ++  R +GLG     S L +L IPY S EA+ I       +   A + 
Sbjct: 535 MAQFPSKEIAELSYKFRTLGLGYANLGSVLMILGIPYDSQEAMAITGAISSIMHMTAYAT 594

Query: 698 SVELAQERGAYSSFKGSL-------------------WDQGVFPIDSIGLLAEVRDELAM 738
           S E+A+E+G ++ +  +                     D     I  IG+         +
Sbjct: 595 SAEMAKEQGPFTGYAKNKKHMLRVIRNHRRAAYNAPSRDYENLTITPIGINPAFCPSYLL 654

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG 797
            + ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  +  K    G
Sbjct: 655 -KAAQEDADFALELGEKHGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 713

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            +  + +  V    ++  +  + I  +  +      +   P
Sbjct: 714 GYFKIINQSVPYGLKKLGYSTSEIEAIVNYCKGHATLNGAP 754



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           ++  ++     V N+   + L+      E +     Y  G+  I N   + +    +   
Sbjct: 797 FLIKDLGITKEVFNAPGFSLLEHIGFTKEEINKANDYVCGTMTIENAPFLKEKDYPVFDC 856

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
           A +        +     I   +  Q +I  A S  +   +E + + +   Y  +W M +K
Sbjct: 857 ANKCGKYGKRFLSYESHIHIMAAAQPFISGAISKTINLPEEATIEDIKDAYFLSWKMMIK 916

Query: 899 TTYYLRSRSATSVEKSTL 916
                R  S  S   +++
Sbjct: 917 ANALYRDGSKLSQPLNSV 934


>gi|302874475|ref|YP_003843108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
 gi|307690918|ref|ZP_07633364.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           cellulovorans 743B]
 gi|302577332|gb|ADL51344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
          Length = 984

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 112/631 (17%), Positives = 224/631 (35%), Gaps = 74/631 (11%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGA---LQENAMLAKYSGGLGNDWTPVRGLGAH 413
              +      Q S+CF+ ++ D L G        +    L K   G G +++ +R  G  
Sbjct: 159 VQSDDAYTRTQASACFILSIEDKLLGNHSISQQFETETRLFKGGSGCGTNFSTIRAKGEK 218

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +    G S GV+ FLK  +  A A+  G   R+ A    L++ H ++ +F+  +      
Sbjct: 219 LS-GGGVSSGVMSFLKGLDRNAGAIKSGGTTRRAAKMVILDSSHPEIMDFITWKAKEEQK 277

Query: 473 RRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
            R    M     +  + +     QN   ++   D+  +      K  + A ++  +   R
Sbjct: 278 VRDLGKMGYDISFDGEAYETVSGQNGNNSVRFSDDFMEKV----KNLDEAPDSEIQLTGR 333

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSS 582
            +  V + I    LW+     +++   P   F D  N                  +++++
Sbjct: 334 IDSTVDKSIKVSELWKNFNKAVYDCADPAPMFSDTLNSWHTCPGGEDGKYFEKHNMINAT 393

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C E      +     CNL S+NLL  +      FD +     I  +  +L+  +    
Sbjct: 394 NPCGEYCFLDDTS----CNLASLNLLNFYDKFAKIFDIESYLHVIGLSQLLLEASVHFGQ 449

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              E   +  +  R  GLG+    + L L+ +PY S E   +    +  ++ H+   S  
Sbjct: 450 FPTEDVARKTYMFRTTGLGVANGAALLLLMGLPYDSEEGRTVLSSIIGLMTGHSYYVSAM 509

Query: 701 LAQERGAYSSFKGSLWDQ---------------------GVFPIDSIGLLAEVRDELAMN 739
           +A+    +  ++ +                            P+     + E      ++
Sbjct: 510 MAKAISPFEKYEINKEHMLKVIRNHARVAGAIKTNFENLNYTPVMVNHEILESLKLTDLS 569

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD 798
            + +  W          G RN+    IAPT TI+      + SI+P + ++  K  + G+
Sbjct: 570 MSLKNSWKAALDCGNKYGYRNAQVTVIAPTGTISFAMDCATTSIEPFFNHIVYKKLVGGN 629

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYH------------------DGSIGNIERIPDD 840
           +  + + L+ +      + E   +++  +                  DG I     + D+
Sbjct: 630 YMTIVNPLLMDALINLGYSEKETNEILSYVMETEMVKGDGYEYEQVKDGKIEGAPHLKDE 689

Query: 841 LKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
              I  TA +       I  +  ++  +     I  + S  + L  + + K  + +   +
Sbjct: 690 HLPIFDTANKCGSGKRYISALGHVKMVAAITPLISGSVSKTVNLPKDATVKDFEDVCLTS 749

Query: 893 WLMGLKTTYYLRSRSATSVE-KSTLKGVDGK 922
           W +G+K     R  S  S    S+LK  +  
Sbjct: 750 WELGIKGITLYRDGSKASQPLNSSLKDAEST 780


>gi|255523366|ref|ZP_05390336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296188300|ref|ZP_06856692.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|255513020|gb|EET89290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296047426|gb|EFG86868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
          Length = 1012

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 128/696 (18%), Positives = 232/696 (33%), Gaps = 96/696 (13%)

Query: 298 LQILYDR--YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
             I YD   Y L         PQ F      GLA     K  +   +Y   +        
Sbjct: 113 ASIFYDESVYALLNQMYAPNSPQWFN----TGLAQSYDIKGSKQGLYYFDENQKKV---- 164

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGA 412
                      Q S+CF+ ++ D L G             L K   G G +++ +R  G 
Sbjct: 165 -VDSCDNYTRTQASACFILSIEDKLLGPHSISDQYVTETKLFKGGSGTGTNFSSIRAKGE 223

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G S G++ FLK  +  A A+  G   R+ A    L+  H ++ +F+  +    +
Sbjct: 224 KLS-GGGFSSGLMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFMTWKAKEEN 282

Query: 472 DRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
             R    M     I     + V+ QN+  ++   D   +  D      +   E       
Sbjct: 283 KVRALGKMGYDMDIDGEAYETVSGQNSNNSVRFSDYFMNKVDNLNNNPDETIE----LKG 338

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHS 581
           R ++K+ + I    +W    +  ++   P   F D  N                   ++S
Sbjct: 339 RVDLKLDKTIGVSDIWEAFNSSSWQCADPAPQFSDTFNAWHTCPAGEDGALNAPYNRINS 398

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDIN 639
           +N C E      S     CNL SIN+   + N  ++FD D     I     +L++ I   
Sbjct: 399 TNPCGEYAFLDDSS----CNLASINIYRFYNNTTHKFDIDGYLHVIGLVQLILESSIHWG 454

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +  E   + ++  R  GLG+    S   ++   Y S  A  +A   +  ++ ++   S 
Sbjct: 455 QYPTEDIARKSYLFRPTGLGISNAASLFMVMGYAYDSDGARNLASSLIGILTGYSYYISS 514

Query: 700 ELAQERGAYSSFK----------------------------GSLWDQ-----GVFPIDSI 726
            +++E GA+  F+                             + +          PI   
Sbjct: 515 LISKEIGAFKKFEINKSYMMRVIRNHVRTAGVDPDDVIKNSKTKYGNDFEGLNYTPIKVD 574

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
             +        ++   +  W +     +  G RN+    IAPT TI+      + SI+P 
Sbjct: 575 HNILNKEGLKYISLCLKDCWGKALSYGEEYGYRNAQVSVIAPTGTISFAMDCGATSIEPF 634

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH------------------ 827
           + ++  K    G F  + + ++    +   +    + D+  +                  
Sbjct: 635 FSHIVYKKLSGGGFLTIINPVITVALKNLGYSNDEVEDILDYVLEKETVTENGFTYEKVL 694

Query: 828 DGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           DG I     + ++   I  T+         I PM  +   +     I  A S  + L   
Sbjct: 695 DGKIEGAPHLKEEHLPIFDTSNRCGSGERYILPMGHVLMVAAITPLISGAISKTVNLPKT 754

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +      I   +W +G+K     R  S  +   +T
Sbjct: 755 ATIDDFKNIVLSSWKLGVKGIALYRDSSKAAQPLNT 790


>gi|282916073|ref|ZP_06323836.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320021|gb|EFB50368.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
          Length = 493

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 181/438 (41%), Gaps = 32/438 (7%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAF---EYLGLQILYDRYFLH 308
           +F   IE              FD+   A+ +    Y +   F    Y+     +  Y L 
Sbjct: 66  FFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALK 125

Query: 309 INGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
            N     +E        VA+ LA      + +A +F + +    +  +TPT  N+G  R 
Sbjct: 126 TNDKSQYLEDYNQHVAIVALYLA---NGNKAQAKQFISAMVEQRYQPATPTFLNAGRARR 182

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+
Sbjct: 183 GELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVL 242

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P  K         +Q G+R GA   YL  +H DVEEFLD +K   D+  R   ++T   +
Sbjct: 243 PIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIV 302

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           P  F     +   + +F+P  V + + +   + ++  E Y            +K +A  +
Sbjct: 303 PSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDL--EKYYDDMVANPNVEKKKKNAREM 360

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETA 598
              +     ++G+P++ FKD  N   P  ++G +  SNLCTEI         N    E  
Sbjct: 361 LNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDE 420

Query: 599 V-----CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           +     CNLGS+N++    +      K   ++ + +  L  V D+ N       +K+N  
Sbjct: 421 IKRDISCNLGSLNIVNVMESG-----KFRDSVHSGMDALTVVSDVANIQNAPGVRKANSE 475

Query: 653 HRAIGLGLMGFQSALHLL 670
             ++GLG+M     L   
Sbjct: 476 LHSVGLGVMNLHGYLAKK 493


>gi|83593776|ref|YP_427528.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576690|gb|ABC23241.1| ribonucleoside-diphosphate reductase class II [Rhodospirillum
           rubrum ATCC 11170]
          Length = 1231

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/650 (18%), Positives = 221/650 (34%), Gaps = 123/650 (18%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------------------ 362
           G    E++ +    E  ++L++     ++P  FN+G                        
Sbjct: 125 GYFDAESDAQAFFDEMRHMLATQVGAPNSPQWFNTGLHWAYGIDGPSQGHFYVDFKTGEV 184

Query: 363 ------TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                   HPQ  +CF+ +V DDL    GI       A L KY  G G +++ +R  G  
Sbjct: 185 KRSESAYEHPQPHACFIQSVNDDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRASGES 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD- 471
           + G    S  ++ FLK+ +  A A+  G   R+ A     +  H D+EEF+  +      
Sbjct: 245 LSGGGKSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVICDIDHPDIEEFITWKAREEQK 303

Query: 472 -------------------DRRRTHDMNTA---------------------NWIPDLFMK 491
                              +  RT D                           IP+ ++K
Sbjct: 304 VAALVSGSKLCSQNLNAVMEATRTWDGKDGDERFDPTVNKTLKKAILGARKAMIPENYIK 363

Query: 492 RVTQ-------NAGWTLFSPDEVSDLH-DLYGKEFEIAYE-------NYERQA----DRG 532
           RV Q          +  +  D  S+ +  + G+    +           ER         
Sbjct: 364 RVIQLSRQGFTGIDFETYDTDWDSEAYLTVAGQNSNNSVRVTDAFLQQVERDGAWTLRHR 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +  R + A  LW ++    + +  P + F    N        G +++SN C+E     
Sbjct: 424 MSEKTRTVKARTLWDEIAFAAWASADPGLQFDTTINDWHTCPESGRINASNPCSEYMFL- 482

Query: 593 SSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
              +   CNL S+NL+           FD    A   R    VL+  + +      +  +
Sbjct: 483 ---DDTACNLASLNLITFRGQGAEAGLFDAVGFAHACRLWTVVLEISVLMAQFPSREIAE 539

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            ++  R +GLG       L    +PY S     +       ++  A + S E+A++ GA+
Sbjct: 540 RSYKFRTLGLGYANIGGLLMANGLPYDSDAGRALCGALSAIMTGVAYATSAEMAEQMGAF 599

Query: 709 SSFKGSLWD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             F  +                          I  + L      +  +   ++  WD+  
Sbjct: 600 PGFAINREAMLRVIRNHRRAAFGESKGYEALSIAPVPLDIRNCPQADLVAVAQRAWDKAL 659

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +     G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + +V  
Sbjct: 660 EIGTAHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMVPS 719

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIE 858
             +   + EA I+ +  +      ++  P  + + + A  F  D +  IE
Sbjct: 720 ALRTLGYGEAAIAAIINYAVGHATLKNAPGVNAQSLIAKGFTQDALARIE 769



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI--PDDLKKIHAT 847
           + +  +      +N   V+ L           +D++  +  +     +     LK  H  
Sbjct: 791 FCRDVLKMSDAQLNDPGVDLLTTLGF----SKADIEAANTHVCGAMTLEGAPGLKDEHLA 846

Query: 848 AFE------------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            F+            +     I   +  Q +I  A S  + + +E S +     Y  +W 
Sbjct: 847 VFDCASPCGRLGKRFLSATSHIHMMAAAQPFISGAISKTINMPNEASVEDCKQAYMTSWR 906

Query: 895 MGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +GLK    Y   S+ +  +    L+  D +          + +    + +
Sbjct: 907 LGLKANALYRDGSKLSQPLAAQVLEEDDDQETLEEAVAGKAVSVQAEVVA 956


>gi|312137428|ref|YP_004004765.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
 gi|311225147|gb|ADP78003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
          Length = 789

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 37/337 (10%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
             +    ++                 CNLGSINL     N + D+ KL    R A+  LD
Sbjct: 458 PGINAFDANGFYVHNCGEQPLLPYESCNLGSINLTKIVKNKKIDWKKLRRITRIAIHFLD 517

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +  ++ +K     R +GLG+MGF   L  L IPY SP+A++IA++ M FIS  
Sbjct: 518 NVIDVNKYPTKEIEKMTKKTRKVGLGVMGFADMLIKLGIPYDSPKALQIAEKLMNFISKE 577

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A   SVEL +ERG++ SFKGS W++  +                                
Sbjct: 578 ARKKSVELGEERGSFPSFKGSKWEKEGYEH------------------------------ 607

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF-TVVNSFLVNELKQ 812
               MRN+    IAPT T++ I  VS SI+P +   +++  M G     ++       K+
Sbjct: 608 ----MRNATTTTIAPTGTLSIIANVSSSIEPIFAIAFIREVMEGTVLLEIHPLFEKIAKE 663

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R  +   ++  +    GSI + + IP+D++++  T+ +IDP+W ++  +  QK++D A S
Sbjct: 664 RGFYSLDLMKKI-AKKGSIQDFDEIPEDIRRLFVTSHDIDPIWHVKMQAAFQKYVDNAVS 722

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             + L  +   K ++ ++  A+ +G K     R  S 
Sbjct: 723 KTVNLPKDAKPKDVERVFLTAYKLGCKGITVYRYGSK 759



 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 39/337 (11%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYN 344
                  L++L  RY      G  IE P+  F RVA  +A       E +  +   +FYN
Sbjct: 1   MKLSKNALEVLKRRYLRRNEKGEVIETPKEMFRRVAHHVAKADTIYGEKDISETEEKFYN 60

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++ +F F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG+G  +
Sbjct: 61  IMKNFEFLPNSPTLMNAGTAIGQLSACFVLPVGDSIEEIFDALKYMALIHKSGGGVGFSF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +  T G + G + F+++ +     + QGG+R+GA    L   H D+EEF++
Sbjct: 121 SKLRPKGDVVASTGGVASGPVSFMRIFDVATDVIKQGGRRRGANMGVLRYDHPDIEEFIE 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K  G    +  + N +    + FM  V +N  + L +P                    
Sbjct: 181 SKKVEG----KFSNFNISVAADEKFMDAVIKNKEYELINP-------------------- 216

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     KV +K+ A  ++RK++ M +  G P + F D  N  +P  H+G + ++N 
Sbjct: 217 -------RNKKVVKKVKARNIFRKIVKMAWSHGDPGMIFLDHINKHNPTPHLGKIEATNP 269

Query: 585 CT--EITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           C   +  + +S     V NL +   +A     ++  +
Sbjct: 270 CVTADTWVMTSKGPRKVKNLINTKFIAVVNGKEYISE 306


>gi|302037266|ref|YP_003797588.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
 gi|300605330|emb|CBK41663.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
          Length = 1180

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 112/580 (19%), Positives = 199/580 (34%), Gaps = 95/580 (16%)

Query: 348 SFHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGN 402
            F+    +       +   HPQ  +CF+ ++ DDL    GI       A L KY  G G 
Sbjct: 158 HFYVDPKSGEVVRATNAFEHPQPHACFIQSIEDDLVNENGIMDLWVREARLFKYGSGTGT 217

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG G  + G    S  ++ FLK+ +  A A+  G   R+ A    L+  H D+EE
Sbjct: 218 NFSRLRGDGESLSGGGRSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPDIEE 276

Query: 462 FLDLRKNTGD------------------------------------DRRRTHDMNTAN-- 483
           F+D +                                         D ++   +  A   
Sbjct: 277 FIDWKVIEEQKVAAMVTGSKICAQRLNTVLKACLLVDAQGLGQVELDMKKNQVLRDAVTA 336

Query: 484 ----WIPDLFMKRVTQNA--GWTLFSPDEVSDLHD-----------------LYGKEFEI 520
                +P+ ++ R+   A  G+T F   E     D                 +    F+ 
Sbjct: 337 ARRDMVPEAYIHRMFDYAKQGYTHFVFHEYDTNWDGKAYQTVSGQNSNNSVRIPNGFFDA 396

Query: 521 AYENYERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              + + +  R       + + A  LW K+    +    P   +    N        G +
Sbjct: 397 LEGDGDWELRRRIDGKISKTVKARDLWDKIAWAAWICADPGTQYDTTINEWHTCPEDGRI 456

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDI 638
           ++SN C+E        +   CNL S+NL   F    +FD D     +R     L+  + +
Sbjct: 457 NASNPCSEYMFL----DDTACNLASLNLSKFFNVEGEFDLDSFRHAVRLWTVALEISVLM 512

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                    + ++ +R +GLG     + L    +PY S +A  I       ++  + + S
Sbjct: 513 ASFPSRAIAQKSYEYRTLGLGYANLGTILMKQSVPYDSSKATAICGAITAIMTGESYATS 572

Query: 699 VELAQERGAYSSFKGSLWD-------------------QGVFPIDSIGLLAEVRDELAMN 739
            E+A E G +  +  +                           I    +  E     AM 
Sbjct: 573 AEMAAEIGPFPGYNRNRESMLRVIRNHRRAAYSAAHEEYEGLTILPTSIQPEHCPP-AML 631

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGD 798
             +R  WD   +     G RN+    IAPT TI  +    +  I+P +  +  K    G 
Sbjct: 632 LAARRAWDRALELGTAYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG 691

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  + +  +    Q   + +A I D+  +      ++  P
Sbjct: 692 YFKIINQSLPPALQALGYTDAQIRDIGAYCAGHQTLKGAP 731



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 11/160 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + +  +      +     N LK      E + +   Y  G+  +     +  +   I   
Sbjct: 774 FCRQKLGISDAQLADPTFNMLKHLGFTQEDVAAANDYCCGTMTVEGAPHLKLEHLPIFDC 833

Query: 848 AFE---IDPM-----WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           A     I          I   +  Q +I  A S  + +  + + + +   Y  AW   +K
Sbjct: 834 ANRCGRIGQRYIAVDAHIRMMAAAQPFISGAISKTINMPADATLEDVKAAYLFAWKSMVK 893

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
                R  S  S   +        + A P     +   + 
Sbjct: 894 AVALYRDGSKLSQPLNASSDSGKGVEASPSVMTVAEKVAE 933


>gi|330889423|gb|EGH22084.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 264

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 147/266 (55%), Positives = 187/266 (70%), Gaps = 20/266 (7%)

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           GAY +F+GSLW +G+ P+DS  +L E R E  + ++    L W  ++ RV+  G+RNSN 
Sbjct: 2   GAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNI 60

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+D
Sbjct: 61  MAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMIND 120

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           LKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGK
Sbjct: 121 LKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGK 180

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV--------------PVT 929
           KLD  YR AW  GLKT YYLR+ +ATS EKST+    GKLNAV              P  
Sbjct: 181 KLDVTYRMAWYRGLKTPYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRP 238

Query: 930 DPNSSTHSLGIPSSCTSD-TECEVCQ 954
              +      +P +C  D  +CE CQ
Sbjct: 239 TEAAPVGPAPVPKACAIDEPDCEACQ 264


>gi|194015491|ref|ZP_03054107.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
 gi|194012895|gb|EDW22461.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
          Length = 417

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 178/444 (40%), Gaps = 59/444 (13%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD F++   ++    +F P  V   +  +  E +I    Y+   +   ++  R I+   
Sbjct: 1   MPDKFIELAREDRPAYVFYPHTVYKAYGTHLDEMDIG-AMYDELVNNPAVRKER-INPRQ 58

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------- 597
           L  KM  +  E+G+P++ F+D  N      H+  V  SNLC+E+   S+  E        
Sbjct: 59  LLEKMAVLRSESGYPYMMFQDNVNREHALNHISRVKFSNLCSEVLQASTVSEYTDYGEPD 118

Query: 598 -----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNH 651
                  CNLGS+N+    A        + + ++ AV  L  V +  N        K+N 
Sbjct: 119 DIGLDISCNLGSLNIANVMAGGS-----IENAVKLAVDALTVVSESTNIKNAPAVAKANR 173

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
             R+IGLG M     L    I Y S EA + A+     +++  +  S ELAQE    +  
Sbjct: 174 EMRSIGLGAMNLHGYLAQNGIAYESEEARDFANVFFATVNYWTLVRSNELAQETGTTFEG 233

Query: 711 FKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           ++GS +  G +       D      +VR     +   + L W  L   V   G+ ++  +
Sbjct: 234 YEGSTYASGEYFDKYLEGDYRPKTDKVRALFKDIVIPTPLEWQVLSDNVNLHGLYHAYRL 293

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAP  +I+ +   + S+ P  + +  ++  +         L                  
Sbjct: 294 AIAPNGSISYVQSATASVMPIMERIEERTYGNSKTYYPMPGL------------------ 335

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
                S  N           +  A+++D   +++  +  Q+ +DQ  S  L+  D  + +
Sbjct: 336 -----SPQNW--------FFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTR 382

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRS 907
            L+ I   A   G+KT YY R++ 
Sbjct: 383 DLNRIDLYAHHKGIKTLYYARTKD 406


>gi|217976380|ref|YP_002360527.1| ribonucleotide-diphosphate reductase subunit alpha [Methylocella
           silvestris BL2]
 gi|217501756|gb|ACK49165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocella silvestris BL2]
          Length = 1230

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 111/561 (19%), Positives = 201/561 (35%), Gaps = 91/561 (16%)

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG 
Sbjct: 182 GELTASTSSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGE 241

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
              +    GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+++  +   
Sbjct: 242 NEKLS-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEDYIQWKVRE 300

Query: 470 -------------------------------GDD---------RRRTHDMNTANWIPDLF 489
                                          GDD          ++   +    ++PD  
Sbjct: 301 EHKVAALVAGSKALRKALKAVARACVNCDGPGDDCFNPEKNPALKKEIKLARRAFVPDAS 360

Query: 490 MKRVTQNA-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENY--ERQA 529
           +K+  Q A        +  F+ D   + +                +F  A E        
Sbjct: 361 IKKAIQLARQGAREIDYETFTTDWDKEAYLTVSGQNSNNSVRVTDDFLRAVEEDSDWTLT 420

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            R + K  + + A ALW K+    + +  P + +    N          + +SN C+E  
Sbjct: 421 RRLDGKAHKVLKARALWEKIGEAAWASADPGLQYHTTINDWHTCPAEAPIVASNPCSEYM 480

Query: 590 LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 +   CNL S+NLL          D D     +R    VL+  + +     ++  
Sbjct: 481 FL----DDTACNLASLNLLQFREPVTGAIDIDSYEHAVRLWTIVLEISVMMAQFPSKEIA 536

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +++ +R +GLG       L    I Y S +   I       ++  + +AS E+A+E GA
Sbjct: 537 VNSYRYRTLGLGYANIGGLLMSSGISYDSDQGRAICGAFSAILTGVSYAASAEMARELGA 596

Query: 708 YSSF------------------KGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDE 748
           +  +                   G ++      I  + L         A+   ++  W +
Sbjct: 597 FEGYGANANAMLRVMRNHKRAADGKVFGYEALSIAPVPLDHAALGAFQALGEHAKAAWSQ 656

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +  G RN+    +APT TI  +    +  I+P +  +  K    G +  + +  V
Sbjct: 657 AVALGEQHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAV 716

Query: 808 NELKQRDLWDEAMISDLKYHD 828
            E  +   + +  I D+  + 
Sbjct: 717 PEGLRSLGYGQKEIDDIIDYA 737



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
           +     I   +  Q +I  A S  + + ++ +       Y  +W +GLK    Y   S+
Sbjct: 861 LSTESHIRIMAAAQPFISGAISKTINMPNDATVDDCKDAYMLSWRLGLKANALYRDGSK 919


>gi|325066267|ref|ZP_08124940.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           oris K20]
          Length = 393

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 167/393 (42%), Gaps = 21/393 (5%)

Query: 206 SRTLIEKEPNYAKVTARFLL--------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           S T+   E +Y  + A+  L             E     + +           L  E   
Sbjct: 10  SETVSSPELDYHALNAKLNLYDAEGRIQFDADHEAARQYFLQHVNQNTVFFHDL-EEKLE 68

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI- 314
             +EEG     + +     + V  A    Y   F F  +LG    Y  Y L   +G R  
Sbjct: 69  YLVEEGYYEGHILDKYSP-EFVKSAFKAAYAHKFRFETFLGAFKYYTSYTLKTFDGKRYL 127

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFL 373
           E  +     VA+ LA      E+ A++  + + S  F  +TPT  N G  +  +  SCFL
Sbjct: 128 ERFEDRVTMVALTLA---NGVERLALDLVDEMMSGRFQPATPTFLNEGKAQRGEPVSCFL 184

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I   +     L+K  GG+    + +R +GA I     +S GVIP +K+  D
Sbjct: 185 VRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSGVIPVMKLLED 244

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 245 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 304

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N    LFSP +V  ++ +   +  +  E Y    D G     +KI+A   ++ +  + 
Sbjct: 305 RNNEDMYLFSPYDVERVYGMPFADINVT-EKYREMVDDGR-IKKKKINARTFFQTLAEIQ 362

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           FE+G+P++ F+D  N  +     G V  SNLC+
Sbjct: 363 FESGYPYVMFEDTVNKAN--PIKGKVVMSNLCS 393


>gi|309789876|ref|ZP_07684454.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
 gi|308228083|gb|EFO81733.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
          Length = 491

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 26/334 (7%)

Query: 600 CNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+NL     + Q  D+D L + +  + R LDNVID N + + +    +   R IGL
Sbjct: 7   CNLGSVNLGLFVTSKQTVDWDNLRTVVHASTRFLDNVIDANHYPLPQIGALSQRIRRIGL 66

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG+   L  + IPYAS EA+ +A E M F+   +  AS ELA+ERG +  ++ S+W  
Sbjct: 67  GVMGWADMLVKMGIPYASDEAIALAREVMAFVDEESKVASEELARERGTFPEWEQSVWG- 125

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                          DE    R         +K      +RN N   +APT TI+ I G 
Sbjct: 126 --------------PDETCARRPDGSRIRPFRK------LRNCNVTTVAPTGTISIIAGC 165

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P +   + +         VN   V + ++   + + ++  +   D    +   +P
Sbjct: 166 SSGIEPLFAIAFWRHQADARMLDVNEQFVAQAQREGWYSQELMERIA--DSGHIHHPEVP 223

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            +++++  TA +I P W + + +  Q+ +D A S  + + +E +   +   Y  A+ +G 
Sbjct: 224 SEVQRVWTTAHDIAPEWHVRTQAAFQESVDSAISKTINMPNEATPDDVRAAYELAFNLGC 283

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           K     R  S ++   ST  G + +  A P   P
Sbjct: 284 KGITVYRDGSRSNQVLSTGSG-EKEKTAAPAPAP 316


>gi|110598403|ref|ZP_01386676.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340012|gb|EAT58514.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
          Length = 1115

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 118/565 (20%), Positives = 216/565 (38%), Gaps = 86/565 (15%)

Query: 363 TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G   
Sbjct: 144 YSRPQAHACFIQSVSDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSGGEKLSGGGS 203

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR----- 473
            S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D       
Sbjct: 204 SSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASLVA 262

Query: 474 -----------------------------RRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
                                         R      +  +P  ++ RV      G+T  
Sbjct: 263 GSRICSRFLQAIVEEALLNGSDRKENPALNRLIQNALSRAVPMSYIIRVLALVEQGFTSL 322

Query: 503 SPDEV-----SDLHDLYGK-----------EFEIAYENYE--RQADRGEIKVFRKISAVA 544
             DE      S+ +   G            EF  A EN +  +   R   K  R + A  
Sbjct: 323 DFDEYNSNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWQLRQRTTGKNVRAVKARD 382

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW K+L   ++   P + F    N        G +++SN C+E        +   CNL S
Sbjct: 383 LWEKILLSAWKCADPGLQFDTTINEWHTCPASGRINASNPCSEYMFL----DDTACNLAS 438

Query: 605 INLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL+        +    +L         VL+  + +     ++  + ++ +R +GLG   
Sbjct: 439 LNLIHFIDEESGRVKIRELQHASALWTIVLEISVLMAHFPSKEIARLSYEYRTLGLGFAN 498

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG--------- 713
             + L +L IPY SP+A+ +A      ++  A + S E+A + GA++             
Sbjct: 499 LGTVLMVLGIPYDSPKALALAGAIASVMTGQAYATSAEMAHDLGAFAGHSANAKEMLRVI 558

Query: 714 ----------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                     S  +     +   G+ +E   +       ++ WDE  ++ K  G RN+  
Sbjct: 559 RNHRRAAHNLSEEEYEGLSVSPRGIDSEYCPKELFEAAGKI-WDEALQKGKKYGFRNAQV 617

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI  +    +  I+P +  +  K    G +  + +  V++  +R  +  + I 
Sbjct: 618 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTPSQID 677

Query: 823 DLKYHDGSIGNIERIPDDLKKIHAT 847
           +++++    G +   P   ++   T
Sbjct: 678 EIEHYCKGHGTLAGSPSINRQWLKT 702



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I  M  +   S  Q +I  A S  + +    +  ++  +Y  AW   +K     R  S  
Sbjct: 806 IKHMAHVRMMSSVQPFISGAISKTVNMPSTATTAEIGEVYTSAWQHMIKAITVYRDGSKL 865

Query: 910 SV 911
           S 
Sbjct: 866 SQ 867


>gi|319442629|ref|ZP_07991785.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 395

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/405 (24%), Positives = 172/405 (42%), Gaps = 23/405 (5%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLE----KLR----REVLTTVYKKPQKATHH 246
            +DL  ++         ++ +Y  + A   L      ++    RE     + +       
Sbjct: 2   TTDLGKSVAEPVAQ--AEQLDYHSLNAMLNLYDSNGNIQFDKDREAANQYFLQHVNQNTV 59

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
               L  E     ++     + + +   D + V       Y + F F  +LG    Y  Y
Sbjct: 60  YFHDL-EEKVGYLVDNEYYDKAVLDK-YDDEFVKDLFKQAYAKKFRFQTFLGAFKYYTSY 117

Query: 306 FLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            L     R  +E  +     VA+GLA  +      A    + +    F  +TPT  N G 
Sbjct: 118 TLKTFDGRRYLERYEDRVCMVALGLADGD---AALASHLVDEIIDGRFQPATPTFLNIGK 174

Query: 364 -RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +  +  SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S 
Sbjct: 175 AQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREVGAPIKHIENQSS 234

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++  
Sbjct: 235 GVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLG 294

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             IPD+  +   +N    LFSP +V  ++     +  +  E+YE   +   I+  + I+A
Sbjct: 295 VVIPDITFELAKRNDDMYLFSPYDVERIYGKPFADVSVT-EHYEEMVEDPRIRKSK-INA 352

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+E
Sbjct: 353 RQFFQTLAEIQFESGYPYIMFEDTVNRAN--PIEGRITHSNLCSE 395


>gi|189346081|ref|YP_001942610.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           limicola DSM 245]
 gi|189340228|gb|ACD89631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium limicola DSM 245]
          Length = 1146

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 129/611 (21%), Positives = 231/611 (37%), Gaps = 97/611 (15%)

Query: 348 SFHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+   +T  +  S      PQ  +CF+ +V DDL    GIF      A + K+  G G 
Sbjct: 153 HFYVDPATQEVRESEDAYSRPQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGT 212

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +R  G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 213 NYSNLRSSGEKLSGGGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVER 271

Query: 462 FLDLRKNTGDDRR--------------------------RTHDMNTANWI--------PD 487
           F++ +    D                             R+ ++N    I        P 
Sbjct: 272 FIEWKAREEDKVAALVAGSRICSRFLKAIVDEAIANGSDRSENLNLQLLIKNALARAVPM 331

Query: 488 LFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGK-----------EFEIAYENYERQA 529
            ++ RV    + G+T    +E      S+ +   G             F  A EN +  A
Sbjct: 332 NYIVRVLALVDQGYTTLDFEEYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENDDMWA 391

Query: 530 --DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +R   K  R + A  LW K+L   ++   P + F    N        G +++SN C+E
Sbjct: 392 LRERTTDKTARAVRARDLWEKVLMSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSE 451

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NL+        +    +L         VL+  + +     + 
Sbjct: 452 YMFL----DDTACNLASLNLIHFVDESTGKIRVRELLHASALWTVVLEISVLMAHFPSKD 507

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++ +R +GLG     + L +L IPY SP+A+ +A      ++  A   S E+A++ 
Sbjct: 508 IARLSYEYRTLGLGFANLGTVLMVLGIPYDSPKALALAGAISALMTGQAYVTSAEMAKDL 567

Query: 706 GAYSSFKG-------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           GA++ +                     S  +     +   G+ +E           ++ W
Sbjct: 568 GAFAGYAANSKDMLRVIRNHRRAAHNLSEEEYEGLSVKPRGIDSEYCPTELFEAAGKI-W 626

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DE  ++ K  G RN+    IAPT TI  +    +  ++P +  +  K    G +  + + 
Sbjct: 627 DEALQKGKKHGFRNAQVSVIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVNQ 686

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP----DDLKKIHATAFEIDP-----MWL 856
            V++  +R  +  A I D++ +    G +   P      LK    T  +I+        +
Sbjct: 687 SVHKALERLGYTSAQIDDIEKYCKGHGTLSGCPTISRQWLKSRGFTDEKIEQVELQLETV 746

Query: 857 IESASRRQKWI 867
            +      KWI
Sbjct: 747 FDIRFAFNKWI 757



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I  M  +   S  Q +I  A S  + +    +  ++  +YR AW   +K     R  S  
Sbjct: 832 ITHMAHVHMMSAVQPFISGAISKTVNMPGTATTVEIGDVYRSAWQHMVKAITIYRDGSKL 891

Query: 910 SV 911
           S 
Sbjct: 892 SQ 893


>gi|319440695|ref|ZP_07989851.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 387

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 13/361 (3%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E     + +           L  E     ++     + + +   D + V       Y + 
Sbjct: 36  EAANQYFLQHVNQNTVYFHDL-EEKVGYLVDNEYYDKAVLDK-YDDEFVKDLFKQAYAKK 93

Query: 291 FAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  +LG    Y  Y L     R  +E  +     VA+GLA  +      A    + + 
Sbjct: 94  FRFQTFLGAFKYYTSYTLKTFDGRRYLERYEDRVCMVALGLADGD---AALASHLVDEII 150

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N G  +  +  SCFL  + D++  I  ++     L+K  GG+    + 
Sbjct: 151 DGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSN 210

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD +
Sbjct: 211 IREVGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTK 270

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    IPD+  +   +N    LFSP +V  ++     +  +  E+YE
Sbjct: 271 RENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERIYGKPFADVSVT-EHYE 329

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              +   I+  + I+A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+
Sbjct: 330 EMVEDPRIRKSK-INARQFFQTLAEIQFESGYPYIMFEDTVNRAN--PIEGRITHSNLCS 386

Query: 587 E 587
           E
Sbjct: 387 E 387


>gi|145641093|ref|ZP_01796674.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274254|gb|EDK14119.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 354

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 157/385 (40%), Gaps = 56/385 (14%)

Query: 550 LTMLFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEI--------TLNSSSEETAVC 600
           +     TG  +I   D CN  S     V  V  SNLC EI         +N  + E A+C
Sbjct: 1   MQERASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALC 60

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            L + NL         + D+L      AVR LD ++D   + +  AK+S+   R++G+G+
Sbjct: 61  TLSAFNLGKIE-----NLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGV 115

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           + +   L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+
Sbjct: 116 INYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGI 175

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            PID+     +   +          W+ L+K ++  G+RNS   A+ P+ T + I   + 
Sbjct: 176 LPIDTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATN 231

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P   ++ +K++  G    V     N +      +  ++ D+  +DG           
Sbjct: 232 GIEPPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDIPSNDG----------- 275

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAW 893
                           +      QK++DQA S N   D    +        L      A+
Sbjct: 276 ---------------YLHLVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAY 320

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKG 918
             GLKT YY  +R      +  L  
Sbjct: 321 KYGLKTLYYQNTRDGAEDVQEDLDD 345


>gi|223983087|ref|ZP_03633285.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
 gi|223964943|gb|EEF69257.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
          Length = 469

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 51/438 (11%)

Query: 490 MKRVTQNAGWTLFSPDEV---SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           M+ V ++  + L  PD         + Y   +    +  E +A    IK +R I A  LW
Sbjct: 1   MEAVERDGTFDLRFPDIANYTPQQKEAYDTHWHKIGDVREWEALGYPIKTYRTIRARDLW 60

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSI 605
             +      +  P I F D  N  +  +  G  V ++N C E  L       +VCNL ++
Sbjct: 61  DLICFCATYSAEPGIFFIDNANKMTNAKAYGQKVVATNPCGEQPLAP----YSVCNLAAV 116

Query: 606 NLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           NL       + +  +D+LA T+   VR+ DNVI+   + ++  +      R +GLG+MG 
Sbjct: 117 NLANFVDKKDGRILFDELAETVALTVRMQDNVINSTPYFLKANEDQALGERRVGLGVMGL 176

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y SPEA+E  D+    I+  A   SVELA+E+G++  F       G   I
Sbjct: 177 HDMLIWNRKRYGSPEALETIDQVFHCIARAAYQTSVELAKEKGSFPFFT-----SGEAFI 231

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           ++                 +   +++++ V   G+RNS+ + IAPT +   + GVS  ++
Sbjct: 232 NT--------------GYMKQMDEDIRQDVLKYGIRNSHLLTIAPTGSTGTMVGVSTGLE 277

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P +   Y +S   G F  VN+ +V+               L  + G         D L +
Sbjct: 278 PYFSFSYFRSGRLGKFIEVNAAIVD-------------QWLALNPGYTR------DTLPE 318

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TT 900
              +A E+ P    ++    Q+WID + S  +      S +++  IY + +  G K  T 
Sbjct: 319 FFVSAMELTPEEHADTQCAIQRWIDSSISKTVNAPRGFSVRQVQHIYERLYAGGAKGGTV 378

Query: 901 YYLRSRSATSVEKSTLKG 918
           Y   SR +  +  S  + 
Sbjct: 379 YVDGSRDSQVLTLSNEEE 396


>gi|304315898|ref|YP_003851043.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777400|gb|ADL67959.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1143

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/342 (30%), Positives = 157/342 (45%), Gaps = 45/342 (13%)

Query: 579 VHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRV 631
           ++S +    I  N   +       CNLGSINL           + DYDKL  T+  AV  
Sbjct: 632 INSFDANGIIIHNCGEQPLLPYESCNLGSINLKNMLKEENGKYEVDYDKLRDTVHNAVHF 691

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID N + + +  +     R IGLG+MGF   L +L+IPY S EAVE AD+ M+FI 
Sbjct: 692 LDNVIDANKYPLPQIDEMTKGTRKIGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFID 751

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS+ELA++RG +  F  S++                                   
Sbjct: 752 EESKKASMELAKKRGVFKYFDKSIYKD--------------------------------- 778

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNEL 810
             K I +RN+    IAPT TI+ I G S  I+P +     ++ M       VN       
Sbjct: 779 --KNIKLRNATTTTIAPTGTISIIAGTSSGIEPLFAIAMTRNVMDNTQLVEVNPIFKEVA 836

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R  + + ++  +    G++  I+ IPDD+KK+  TA +IDP+W I   +  QK +D A
Sbjct: 837 LKRGFYSDELMKKI-AEQGTLKGIDSIPDDVKKVFVTAHDIDPVWHIRMQAAFQKHVDNA 895

Query: 871 QSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            S  + +  + +   +  +Y  A+ +GLK     R  S  S 
Sbjct: 896 VSKTVNFRHDATVDDVREVYELAYRLGLKGVTIYRDGSRDSQ 937



 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 38/304 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  +E  +  F RVA  ++  + +       E+   +FY
Sbjct: 1   MNLTENSKKVLERRYLAKDENGRVVETVEELFERVAKSISEIDKKYDSNANIEELKNKFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMTNLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVKSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    D     + N +  I + FMK V     + L  P                   
Sbjct: 181 QCKQ----DNNEITNFNISVGITEDFMKAVESGEDYDLVDPHTKK--------------- 221

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V  K++A  ++  ++ M ++ G P I F D  N ++P   +G + S+N
Sbjct: 222 ------------VVNKLNAREVFELIVEMAWKNGEPGIVFLDRINEKNPTPAIGEIESTN 269

Query: 584 LCTE 587
            C  
Sbjct: 270 PCVT 273


>gi|310831444|ref|YP_003970087.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
 gi|309386628|gb|ADO67488.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
          Length = 1257

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 110/397 (27%), Positives = 178/397 (44%), Gaps = 74/397 (18%)

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G    L LL +
Sbjct: 877  GKDYDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLALLRV 936

Query: 673  PYASPEAVEIADESMEFISFHAISA----------------------------------- 697
            PYAS  A++I ++    I   A++A                                   
Sbjct: 937  PYASKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEFYDDN 996

Query: 698  ------------------SVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
                              S EL + +   AYS+F+GS + +G                L 
Sbjct: 997  FECYPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEGKLQYHLWNRTPINISTLI 1056

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              ++    WD L   +K  G RNS   A+ PTA+ + + G  +S +P   N+Y +  ++G
Sbjct: 1057 EGKS----WDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRRTLAG 1112

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            +F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T++E+   ++I
Sbjct: 1113 EFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQKYII 1171

Query: 858  ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            +  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+ + +  K T+
Sbjct: 1172 DGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANATKITV 1231

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                           N+S + +   +    D  C +C
Sbjct: 1232 -------------LLNNSQNKINSQNMMEEDEGCVMC 1255



 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 21/299 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           +  ++  DG   + +  ++   + +  +G   +++    ++ +T  ++Y G++  +L+  
Sbjct: 15  QYYVIKRDGRRENVHFDKITQRISKLLTGNMNKNIDIINIVKKTITSIYPGITTKELDNQ 74

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
             +    +     +YA +  R  +  L +E + T  +K +      +      Y   +IE
Sbjct: 75  SAYQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEKMEL-----INDNLHIYDSEWIE 129

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
              K R             L   + Y RD++F++ G++ +   Y   ++G  IE PQ  F
Sbjct: 130 FIKKHR-----------NKLNKIIDYNRDYSFDFFGIKTMERTYITKLDGHLIERPQDVF 178

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVA  +   + +K    ++ YNL+S  +F  ++PTLFN+G +   L SCFL    D + 
Sbjct: 179 MRVASLVHCGDLQKT---IDSYNLMSKKYFTHASPTLFNAGNKKGNLVSCFLLGTEDSMT 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           GI     + A ++K+ GG+G   + VR  G+ I  TNG S G++P L+V N     VNQ
Sbjct: 236 GISKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGHSDGIVPMLQVYNSICRYVNQ 294



 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 107/184 (58%), Gaps = 5/184 (2%)

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
              ++  V+  G+RKG+   YLE  H D+ +FL+LRKNTG +  R  D+  A W+ DLFM
Sbjct: 620 YLTSSGIVHNSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFM 679

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +V  N  W LF PD+   L+D+YG E+E  Y  Y       E K  +KI A  LW  ++
Sbjct: 680 NQVKLNNDWYLFCPDKAPGLNDVYGDEYETLYWKYV-----SEEKYNKKIKARKLWEAIM 734

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T  FETG P++ +KD  N +S Q+++G++ SSNLC EI   S S ETA CNL SI L   
Sbjct: 735 TAQFETGSPYMLYKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIALPNF 794

Query: 611 FANN 614
             + 
Sbjct: 795 IKSK 798


>gi|240141792|ref|YP_002966300.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
 gi|240011734|gb|ACS42959.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
          Length = 1019

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 193/555 (34%), Gaps = 96/555 (17%)

Query: 376 VPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + DDL    GI       A L KY  G+G++++ VRG         GKS G++ FL++ +
Sbjct: 1   MKDDLVNEGGIMDLWVREARLFKYGSGVGSNFSMVRGK-DEKLSGGGKSSGLMSFLQIGD 59

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------ 473
             A ++  G   R+ A    ++  H D+E ++D +                         
Sbjct: 60  KAAASIKSGGTTRRAAKMVIVDIDHPDIEAYIDWKVQEEYKVAALVTGSKVVSKHLNLIL 119

Query: 474 ----------------------RRTHDMNTANWIPDLFMKRVTQNA-------GWTLFSP 504
                                 +R         +PD ++KRV Q A        + ++  
Sbjct: 120 KACVNCEAEGAACFDPERNPVLKREIKAARKATVPDAYIKRVVQFASQGFTSIEFPVYDT 179

Query: 505 DEVSDLHDLYG-----------KEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLT 551
           D  S+ +                +F  A E         R   KV + + A ALW K+  
Sbjct: 180 DWESEAYLTVSGQNSNNSVSLTDDFLRAVEADGDWNLTARTTGKVVKTVKARALWDKIGE 239

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             + +  P + F    N        G +  SN C+E        +   CNL S NLL   
Sbjct: 240 AAWASADPGLHFNTTMNDWHTCPAGGRIRGSNPCSEYMFL----DDTACNLASANLLTLV 295

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +FD   L    R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 296 TRGRFDVAMLEHVCRLWTVVLEISVAMAQFPSARIAELSYRYRTLGLGYANIGGMLMSTG 355

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF------------------KG 713
           I Y S E   I       ++  A + S E+A E G + ++                   G
Sbjct: 356 IAYDSHEGRAICGAITAIMTGVAYATSAEMAAELGTFEAYPENAEHMLRVIRNHRRAAHG 415

Query: 714 SLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                    I+ + L     D          A+   +   WD      +  G RN+    
Sbjct: 416 ETEGYEGLSINPVALDHAGLDCPVARQYGYDALGEAAVAAWDRALSLGELHGYRNAQASV 475

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI  +    +  I+P +  +  K    G +  + +  V    +   +++A I+++
Sbjct: 476 IAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPSALRALGYEQAQIAEI 535

Query: 825 KYHDGSIGNIERIPD 839
           + +    G++ + P 
Sbjct: 536 EAYAVGHGSLGQAPA 550



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 775 ICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNELKQRDLWDEAM------ISDLKYH 827
           I  V   ++ ++   +V      GD  +VN+  V   K  D+  E +        D++  
Sbjct: 566 IAAVEAGLESAFDIKFVFNRWNLGDDFLVNTLKVPAEKLADVKFELLPHLGFSARDIEAA 625

Query: 828 DGSIGNIERI--PDDLKKIHATAFE------------IDPMWLIESASRRQKWIDQAQSL 873
           +  +     +     LK+ H   F+            +     I   +  Q +I  A S 
Sbjct: 626 NEHVCGAMTLEGAPHLKREHYAVFDCANPCGRKGTRYLSAESHIRMMAAAQPFISGAISK 685

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDG 921
            + + ++ + +     Y+ +W   LK    Y   S+ +  +  + +   DG
Sbjct: 686 TINMPNDATVEDCKAAYKLSWTYALKANALYRDGSKLSQPLNSALIADEDG 736


>gi|171186058|ref|YP_001794977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
 gi|170935270|gb|ACB40531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
          Length = 1240

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 36/378 (9%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----------NQFDYDKLASTIRTAVR 630
            +  + +     +      VCNL  INL+                  D++ LA   R   R
Sbjct: 825  AEGIVSHNCAETVQNPFEVCNLTHINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTR 884

Query: 631  VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
             LD+ ID +   IE   + N   R  GLG+MGF   L  L IPYAS EAVE+ +  M +I
Sbjct: 885  FLDDAIDRSYTGIEVIDEMNRATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWI 944

Query: 691  SFHAISASVELAQERGAYSSFKGSLWDQGV-----FPIDSIGLLAEVRDELAMNRTSRLP 745
              +A+  S ELA+ERG +  F+ S + +G      F     G    VR  L         
Sbjct: 945  YVNALDESAELARERGPFKFFEKSAYARGEIPVLKFQDYVWGRWERVRGALPPELREAGD 1004

Query: 746  -----------W-----DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       W     + L+++V+  G+RNS  ++IAPT   + + G +  ++P +   
Sbjct: 1005 RLRGITMRTREWLRPRLEALREKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALA 1063

Query: 790  YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            ++++   G         V  L+ R LW   +   ++   G + +   +P+++K + ATA 
Sbjct: 1064 FIRNVTVGTLIEYYWPAVEWLRARGLWTPQVRKTVE-ETGMLKDAP-LPEEVKHLFATAM 1121

Query: 850  EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            EI  +W +   +  Q+W+DQ  S  + +      + + + +  AW +G+K     R +S 
Sbjct: 1122 EIGWLWHVLMQASAQQWVDQGISKTINMPANAPKEDVYWAFALAWALGVKGITVYRDKSK 1181

Query: 909  T-SVEKSTLKGVDGKLNA 925
            +  V  + LK    K  A
Sbjct: 1182 SVQVIYTGLKQEIKKKLA 1199



 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/438 (21%), Positives = 177/438 (40%), Gaps = 40/438 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   DG+   F+ ++L++ V+ A           V  E    M   +   +L   +    
Sbjct: 4   VTKLDGSTEPFSPEKLKLSVQRAA----GEVGVEVDGEVDIKMDRAVGSWELADLVQLEL 59

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                  P  A+V    LL ++ +EV    + + +          Y +     + +    
Sbjct: 60  LKRAIDRPELAEVAKSHLLGRVYKEVFGKDFLRHKSGYLERALARYRQLAEAGLLKEESL 119

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMRV 324
           RLL            A + K + D +  Y  L++  +  Y L     R+ E P     RV
Sbjct: 120 RLLE-----------AFEPKPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAWRV 168

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY--- 381
           A  +A       + A  +Y +++S   + ++P  FN+ T+    +SCF   V D L    
Sbjct: 169 ATAVAR----DVETARRYYGVITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSSLS 224

Query: 382 -----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
                 I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ +    
Sbjct: 225 HPGRFCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTNVE 284

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--T 494
            + QGGKR+GA    L  WH DV +F+  +     D     + N + ++ D FM++    
Sbjct: 285 VIKQGGKRRGAQMGTLHVWHPDVRKFIKAKTGELKD-AHLQNFNISVFVDDAFMEKALGL 343

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               + L +P     L     K  E      E +    +  V   + A  L+R++    +
Sbjct: 344 DKPEYPLVNPRIY--LERAGRKPVE------ETRVSPPQEAVAGWVDARELFREITEGAW 395

Query: 555 ETGHPWITFKDPCNIRSP 572
           ++G P + +KD  N  +P
Sbjct: 396 DSGDPGVIYKDNLNASNP 413


>gi|167840936|ref|ZP_02467620.1| hypothetical protein Bpse38_29954 [Burkholderia thailandensis
           MSMB43]
          Length = 613

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/591 (20%), Positives = 202/591 (34%), Gaps = 72/591 (12%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQENAM 392
           A  FY  L +                   ++SCF+  +            +  AL E  +
Sbjct: 70  ARRFYRNLLNGALGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFQPNLDEALDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                  LG D++ +   GA        S GV   L   +       +   R  A  A L
Sbjct: 130 ALAMGADLGYDFSDIPPAGARPDADQPTSPGVRAALDRFDRIGAQAGERDGRHRAQLAVL 189

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  F   +            +  A  + D FM+ V Q+  WTL  P    D   
Sbjct: 190 RCDHPDLSAFATAKCGRERGHAHRTTLELAVAVTDAFMQAVEQDLPWTLRHPAPPRDAAS 249

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                 + A               +  + A  LWR+++    +   P + F D  +   P
Sbjct: 250 GALPAADGA-------------WTYASVPARNLWREIVAAARDGAGPGLVFVDAIDAADP 296

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------QFDYDKLASTI 625
            +    + +++ C    L           LG+++L     N        +FD+    + +
Sbjct: 297 LRGRERIDATSPCGAQPLPPYGSAM----LGAVDLSRFVRNPFGAGGEPRFDFAAFDAAV 352

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R  VR+LDN +DI    +    + ++  R IG+G+ G    L ++ + Y SP A E+A  
Sbjct: 353 RVEVRLLDNALDIARWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARY 412

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
               +   A SAS ELA ERGAY               D    L  +R    +       
Sbjct: 413 IASDLRNLAYSASAELAAERGAYPLC------------DRHAHLDALRAGPPLPH----- 455

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVN 803
              +   ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  +G      
Sbjct: 456 --AVCHAIERDGLRNSHLTSFAPAVGVSLAFGDNCSPGIEPARAWIEHRTVRAGAAGA-- 511

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +  E     L+       +                L +  AT  +I P   +   +  
Sbjct: 512 PGMRAENHAHRLFRSLRGERVA---------------LPEYFATEADIAPGDRLAMRAAL 556

Query: 864 QKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRS---RSATS 910
           Q  +D      L      S ++++ +   AW   LK+    R+   R A S
Sbjct: 557 QPCVDAGIGNTLTLASHYSLEEVNALLFAAWRAKLKSVAIRRTDLARDAQS 607


>gi|323705616|ref|ZP_08117190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535093|gb|EGB24870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1180

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 173/390 (44%), Gaps = 57/390 (14%)

Query: 564  KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----TAVCNLGSINLLAHFANN----Q 615
             +             V  S +C  I ++   E+       CNLGSINL           +
Sbjct: 656  IEKIGKEVVYDLTEPVTHSMICNGIVVHQCGEQPLLPYESCNLGSINLKNMLKEENGKYE 715

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             DY KL  T+  AV  LDNVID N + +++  +     R IGLG+MGF   L +L+IPY 
Sbjct: 716  VDYGKLRDTVHNAVHFLDNVIDANKYPLQQIDEMTKGTRKIGLGVMGFADMLLMLNIPYN 775

Query: 676  SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            S EAVE AD+ M+FI   + +AS+ELA++RG +  +  S++                   
Sbjct: 776  SEEAVEFADKLMKFIDEESKAASMELAEKRGVFKYYDKSIYKD----------------- 818

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                              K I +RN+    IAPT TI+ I G S  I+P +     ++ M
Sbjct: 819  ------------------KNIRLRNATTTTIAPTGTISIIAGTSSGIEPLFAIAMTRNVM 860

Query: 796  SGDFT-VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                   VN        +R  + E ++  +    G++  I+ IPDD+K++  TA +IDP+
Sbjct: 861  DNTQLVEVNPVFKEVALKRGFYSEELMKKI-AQQGTLKGIDGIPDDVKRVFVTAHDIDPV 919

Query: 855  WLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS--- 910
            W I   S  QK +D A S  + +  + +   +  +Y  A+ +GLK     R  S  S   
Sbjct: 920  WHIRMQSAFQKHVDNAVSKTVNFRHDATVDDVREVYELAYKLGLKGVTIYRDGSRDSQVL 979

Query: 911  ------VEKSTLKGV--DGKLNAVPVTDPN 932
                  VEK  +K    +G+   VP   P+
Sbjct: 980  NLGIKKVEKEGVKEDKQEGRNQIVPRPRPS 1009



 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 38/304 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  +E  +  F RVA  ++  + E       EK   +FY
Sbjct: 1   MNLTENSKKVLERRYLAKDENGRVVETVEELFERVAKAISDVDKEYDINADTEKVKKKFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  EMMTNLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    D     + N +  I + FMK V +   + L  P                   
Sbjct: 181 QCKQ----DNNEITNFNISVGITEDFMKAVEKGQDYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV + ++A  +++ ++ M ++ G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------NKVVKSLNAREVFKLIVEMAWKNGEPGIVFLDRINEKNPTPLVGEIESTN 269

Query: 584 LCTE 587
            C  
Sbjct: 270 PCVT 273


>gi|194335987|ref|YP_002017781.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308464|gb|ACF43164.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1141

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/594 (20%), Positives = 222/594 (37%), Gaps = 89/594 (14%)

Query: 348 SFHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    +  +  S      PQ  +CF+ +V DDL    GIF      A + K+  G G 
Sbjct: 158 HFYVDPESGEVKESEDAYGRPQAHACFIQSVSDDLVNDGGIFDLAIREARVFKFGSGSGT 217

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +R  G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+
Sbjct: 218 NYSNLRSGGEKLSGGGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEK 276

Query: 462 FLDLRKNTGDDRR----------------------------------RTHDMNTANWIPD 487
           F++ +    D                                     R      +  +P 
Sbjct: 277 FIEWKAKEEDKVASLVAGSRICSRFLQAIVEEALANGADRKANPQLHRLIQNALSRAVPM 336

Query: 488 LFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGK-----------EFEIAYENYE--R 527
            ++ RV      G+T    +E      S+ +   G            EF  A EN +   
Sbjct: 337 SYIVRVLALVEQGYTTLDFEEYTSNYESEAYQTVGGQNSNNTVRMTNEFMKAVENDDVWS 396

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +R   K  R + A  LW K+L   ++   P + F    N        G +++SN C+E
Sbjct: 397 LRERTTGKTARVVKARDLWEKILLSSWKCADPGLQFDTTINEWHTCPKSGRINASNPCSE 456

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NL+        +    +L         VL+  + +      +
Sbjct: 457 YMFL----DDTACNLASLNLIHFIDEASGRMKVKELQHASALWAVVLEISVLMAHFPSRE 512

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++  R +GLG     + L +L IPY SP A+ +A      ++  A   S E+A + 
Sbjct: 513 IARLSYEFRTLGLGFANLGTVLMVLGIPYDSPRALALAGAISAVMTGQAYVTSAEMAHDL 572

Query: 706 GAYSSFKG-------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           GA+S ++                    S  +     +   G+ +E      +   +   W
Sbjct: 573 GAFSGYEANREEMLRVIRNHRRAARNMSEEEYEGLSVKPRGIDSEYCPG-ELFEAAGKVW 631

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           D   ++    G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 632 DLALEKGMQYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQ 691

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFEIDPMWLIE 858
            V++  +R  +  A I D++++    G +   P   +  + +  F  D + ++E
Sbjct: 692 SVHKALERLGYTPAQIDDIEHYCKGHGTLSGSPSLNRQWLKSRGFPDDKIEIVE 745



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I  M  +   S  Q +I  A S  + +    +  ++  +++ AWL  +K     R  S  
Sbjct: 837 IKHMAHVRMMSAVQPFISGAISKTVNMPGTATTVEIGEVFQAAWLQMVKAITIYRDGSKL 896

Query: 910 SV 911
           S 
Sbjct: 897 SQ 898


>gi|145220004|ref|YP_001130713.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206168|gb|ABP37211.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 1149

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 209/549 (38%), Gaps = 87/549 (15%)

Query: 363 TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G   
Sbjct: 175 YSRPQAHACFIQSVNDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSSGEKLSGGGS 234

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR----- 473
            S  ++ FLK+ + +A A+  G   R+ A    ++  H DVE+F++ +    D       
Sbjct: 235 SSG-LMSFLKIFDSSAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAREEDKVASLVA 293

Query: 474 -----------------------------RRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
                                        +R  +      +P  ++ RV      G+T  
Sbjct: 294 GSRICSRFLQAIVAEALENGADRTRNPKLQRLIENALQRAVPMNYIIRVLALVEQGFTSL 353

Query: 503 SPDEV-----SDLHDLYGK-----------EFEIAYENYE--RQADRGEIKVFRKISAVA 544
             DE      S+ +   G            EF  A EN +     +R   K  R ++A  
Sbjct: 354 DFDEYDTNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWTLKERTTGKGARAVNARD 413

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW+K+L   ++   P + F    N        G +++SN C+E        +   CNL S
Sbjct: 414 LWQKILLSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMFL----DDTACNLAS 469

Query: 605 INLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL+            D+L          L+  + +     ++  + ++  R +GLG   
Sbjct: 470 LNLIHFLDEKSGTIKVDELRHAAGLWTIALEISVLMAHFPSKEIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---------- 712
             + L +L IPY SP+A+ +A      I+  A   S ELA++ G +  +           
Sbjct: 530 LGTVLMVLGIPYDSPKALALAGSISALITGQAYITSAELARDLGPFDGYAANSKEMLRVI 589

Query: 713 ---------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                     S  +     +   G+ +E           ++ WDE  ++ K  G RN+  
Sbjct: 590 RNHQRAAHNKSQEEYEGLSVKPRGIDSEYCSNELFAAVGKV-WDEALQKGKKHGFRNAQV 648

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI  +    +  I+P +  +  K    G +  + +  V++   R  +    I 
Sbjct: 649 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALGRVGYSPKQIE 708

Query: 823 DL-KYHDGS 830
           ++ +Y  GS
Sbjct: 709 EIERYCKGS 717



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I+ M  +   S  Q ++  A S  + +    +  ++  +Y   W   +K     R  S  
Sbjct: 837 INHMAHVHMMSAVQPFVSGAISKTVNMPSTATVDEISEVYLSGWHHMIKAITVYRDGSKL 896

Query: 910 SV 911
           S 
Sbjct: 897 SQ 898


>gi|257076070|ref|ZP_05570431.1| ribonucleoside reductase class II [Ferroplasma acidarmanus fer1]
          Length = 1136

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 214/562 (38%), Gaps = 134/562 (23%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+      + ++ D +    E           S+
Sbjct: 8   VIKRDGSSVPFDKKKIAMAIFKAMLSVKIGSMEEANKLADYVAQELE----------TSS 57

Query: 91  LIVHIEDIQDQVECSLM-----QSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
            +  +E IQD VE  LM        +    + Y+LYRE+R+ +R  +             
Sbjct: 58  EVPTVELIQDTVEKVLMTRRINDVSYIAAAKAYILYREKRNTIRQEKE------------ 105

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I + D   +S N+ +    V EA    +D   KI+  ET K M+  ++   +   +I  
Sbjct: 106 FIGVKDDLKLSLNAVK----VLEARYLFKDSEGKII--ETPKQMFHRVA---VHLGIIQG 156

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                     Y  ++ R    KL  +   TVY    K  + E++  + E       +G  
Sbjct: 157 L---------YDYISYR-KTGKLNEK--GTVYSGITKTQNEELERAFNELKKEKAIDGTY 204

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +       ++      + Y                          IE  +       
Sbjct: 205 TEFIDFIKTKKNM------INYW-------------------------IEKFE------- 226

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                             N++    ++ ++PTL N+G    QLS+CF+  V D +  IF 
Sbjct: 227 ------------------NMMIKLEYVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFD 268

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            L+  A + K  GG G  ++ +R     +  T G + G + F+++ + T   + QGGKR+
Sbjct: 269 TLKATAEIHKSGGGTGFSFSRLRASDDIVASTKGVASGPVSFMRIFDVTTDVIKQGGKRR 328

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA    L   H ++ +F++ +     + +   + N +  + D F +++  +    L +P 
Sbjct: 329 GANMGILNYNHPNIMDFINSKDA---ENKILSNFNISVGVNDEFFEKLDNDENVDLINPR 385

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +                             V  ++ A  LW  ++   + T  P + F D
Sbjct: 386 DGK---------------------------VTGRVKATTLWNSIIDHAWLTADPGMIFLD 418

Query: 566 PCNIRSPQQHVGVVHSSNLCTE 587
             N ++P +++G + S+N C  
Sbjct: 419 EINKKNPVKNIGYIESTNPCVT 440



 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/394 (28%), Positives = 172/394 (43%), Gaps = 44/394 (11%)

Query: 564  KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----TAVCNLGSINLLAHFANNQFDYD 619
             +          V     S +   I +++  E+       CNLGSINL     + +F+Y+
Sbjct: 775  IEYVGREDVYDLVEPSTHSFVANGIVVHNCGEQPLLPYESCNLGSINLAKFVEDGKFNYE 834

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            +   TI  A R L+NV+D N   +E  K      R IGLG+MGF  AL +L IPY S EA
Sbjct: 835  RYRETIDVATRFLENVVDANKFPVESIKNMTRKTRKIGLGIMGFADALIMLGIPYNSNEA 894

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            +E A+  M+ ++  +   S +LA ERG +  + GS +++                     
Sbjct: 895  LEFAENVMKTLNDESHMESQKLAAERGVFPGWYGSEYEE--------------------- 933

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-D 798
                          K I MRNS    IAPT TI+ I G S SI+P +   +V+  ++G +
Sbjct: 934  --------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFALAFVRHVLNGQE 979

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
               VN  L N LK R+LW + ++  +    G +GN++ +P+D+K +  TA EIDP W + 
Sbjct: 980  LLEVNPLLENALKSRNLWTQELMEKI-AETGKLGNLD-LPEDVKNLFITAQEIDPDWHVL 1037

Query: 859  SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
              +  QK+ D   S  + L  + + + +   YR A  +  K     R RS +        
Sbjct: 1038 MQATFQKYCDSGVSKTINLPFDATREDIAKSYRLAKELHCKGITVYRDRSKSQQVLYAGT 1097

Query: 918  GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
                K +     D         +    T D  C 
Sbjct: 1098 N-QKKSDEEHKIDLTMKMPDKLLKLGATFDPACP 1130


>gi|288926569|ref|ZP_06420486.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
 gi|288336646|gb|EFC75015.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
          Length = 646

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 186/517 (35%), Gaps = 89/517 (17%)

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM+    N  +    P                              KV ++
Sbjct: 5   NVSVKLDDEFMQAAIDNRPYVQQFP------------------------VTGDAPKVKKE 40

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           ISA ALW K++   +++  P + F D     S       +    + T             
Sbjct: 41  ISAKALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDS 100

Query: 600 CNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVID----------------- 637
           C L SINL ++       +  FD DK     + A R++D+++D                 
Sbjct: 101 CRLISINLYSYVEHPFTPDAHFDMDKFKQHAQLAQRLMDDIVDLEMEKIELIMEKIKADP 160

Query: 638 -------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                     H  EK K  +   R  G+G+      L  + + Y + EA + + E  + +
Sbjct: 161 QSEEVKGAEYHLWEKIKHKSSLGRRTGVGITAEGDMLAAMGLRYGTQEATDFSVEVHKTL 220

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           + +A ++SV++A+ERGA+  F     +   F +                        +L 
Sbjct: 221 ALNAYASSVQMAKERGAFEIFDAKREEHNPFILRLKDADP-----------------QLY 263

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-KSNMSGDFTVVNSFLVNE 809
             +   G RN  C+ IAPT T + +   +  I+P +  +Y  +  ++ + T V+   V+E
Sbjct: 264 DDMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDE 323

Query: 810 LKQRDLWDEAMISDLKYHDGSIGN------------IERIPDDLKKIHATAFEIDPMWLI 857
           +   D ++E ++   K+      N            I+ +        ATA ++D +  +
Sbjct: 324 VG--DSFEEYIVYHRKFLTWMQANGLDTEKRYTQEEIDALVSRSPYYKATANDVDWLMKV 381

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +     QKW+D + S+ + L     + L + +Y +AW  G K     R  S + V  S  
Sbjct: 382 KMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWKSGCKGCTIYRDGSRSGVMISVS 441

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           K    K  +     P +       P       +   C
Sbjct: 442 KKDKKKEASAA---PVAEAVPCKHPQVTEVRPQTLEC 475


>gi|296444836|ref|ZP_06886799.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
 gi|296257784|gb|EFH04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
          Length = 1207

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 118/579 (20%), Positives = 205/579 (35%), Gaps = 92/579 (15%)

Query: 348 SFHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+   +T   T   +   HPQ  +CF+ +V DDL    GI       A L KY  G G+
Sbjct: 174 HFYVDHNTGELTKSKTAYEHPQPHACFIQSVEDDLVNDGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE 
Sbjct: 234 NFSRLRGEKEKLSGGGSSSG-LMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDVEA 292

Query: 462 FLDLRKNTGDDRRRT-------HDMNTANW------------------------------ 484
           F++ +    +                 A                                
Sbjct: 293 FIEWKVKEEEKVAALVAGSKIVKKHLKAVMRACVNCEGPGFDCFEPEKNPALKREIRAAR 352

Query: 485 ---IPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYG-----------KEFEIAYE 523
              +P+ ++KRV Q       +  +  +  D  S+ +                EF  A E
Sbjct: 353 RAEVPENYIKRVIQFARQGYKDISFETYDTDWDSEAYLTVSGQNSNNTVRVTDEFLRAVE 412

Query: 524 --NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R + KV + + A  LW ++    + +  P I F    N        G + +
Sbjct: 413 SDGDWNLTRRLDGKVSKTLKARELWERIGYAAWASADPGIQFHTTINDWHTCPAGGPIRA 472

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDIN 639
           SN C+E        +   CNL S+NLL    +   +FD D      R    VL+  + + 
Sbjct: 473 SNPCSEYMFL----DDTACNLASLNLLQFRNDETKRFDVDSYEHAARLWTVVLEVSVLMA 528

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                +  + ++ +R +GLG       L    I Y S     +       ++  A  AS 
Sbjct: 529 QFPSREIAQLSYDYRTLGLGYANVGGLLMSCGIAYDSEAGRALCGALSAIMTGVAYRASA 588

Query: 700 ELAQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           E+A+ERGA+  F                   G         +  + L      +  +   
Sbjct: 589 EMAKERGAFDCFPQNREAMLRVIRNHRRAAHGQRAGYEGLSMTPVPLDHAACPDQTLIAR 648

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFT 800
           +   WDE     +  G RN+    +APT TI  +    +  I+P +  +  K    G + 
Sbjct: 649 AMRAWDEALSLGEQYGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYL 708

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            + +  V E  +   + EA I++++ +     ++   P 
Sbjct: 709 KIVNRAVPEALRALGYREAEIAEIEAYAVGHASLSNAPA 747



 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              I   +  Q +I  A S  + + ++ + +  +  Y  +W + LK     R  S  S  
Sbjct: 863 ESHIRMMAAAQPFISGAISKTINMPNDATIEDCEASYLLSWKLALKANALYRDGSKLSQP 922

Query: 913 KST 915
            ST
Sbjct: 923 LST 925


>gi|52550429|gb|AAU84278.1| ribonucleotide reductase large subunit [uncultured archaeon
           GZfos9C4]
          Length = 914

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 43/339 (12%)

Query: 579 VHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLD 633
           +++ N    +  N   +       CNLGSIN+       + + D+++L   I  +V+ LD
Sbjct: 584 INAFNANGFVVHNCGEQPLLPYDSCNLGSINVSKFVKSGDGEIDWERLREVICISVKFLD 643

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           +VID+N + + + +K    +R IGLG+MGF   L  L I Y S +A+   ++ M+FI+  
Sbjct: 644 DVIDVNRYPLPEIEKMTKANRKIGLGIMGFAELLIKLGIAYDSKDALSTGEKLMQFITNE 703

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A   S EL  ERG++S+F+ S+W+                                    
Sbjct: 704 ARRCSTELGLERGSFSNFELSVWNS----------------------------------- 728

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K   MRN+    IAPT TI+ I G S  I+P +   +V++ M G    +N       K+R
Sbjct: 729 KYEAMRNATVTTIAPTGTISIIAGCSSGIEPIFAVAFVRNVMGG-MLEINKLFEEIAKER 787

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
             + + +I+++    GS+ +I+ +P D+K++  TA +I P W +   +  QK+ D A S 
Sbjct: 788 GFYSKELITEIAKC-GSVQDIDGVPGDIKRVFVTALDISPEWHVRMQAAFQKYTDNATSK 846

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            + L  + +   +  ++  A+ +  K     R  S   V
Sbjct: 847 TVNLPSDATWGDVKKVFLLAYKLKCKGITIYRYGSKEQV 885



 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 40/317 (12%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK 337
           +   N +  + D       +++L  RY L    G  IE P   F RVA  +A  E    K
Sbjct: 8   IRKKNFIGAKDDLKLSLNAVEVLKRRYLLKNELGGVIETPSQMFKRVAKAIARAELNYGK 67

Query: 338 RAVE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
              E       FY L+ +  F+ ++PTL N+GT   QL++CF+  V D + GIFGA+++ 
Sbjct: 68  SKEEVKEIERRFYLLMRNLEFLPNSPTLMNAGTELGQLAACFVLPVEDSIGGIFGAVKKM 127

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A + +  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA   
Sbjct: 128 AKIHQSGGGTGFSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMG 187

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            L   H D+ EF+  +     +R    + NT+  + D FM+ V +N  + L +P    ++
Sbjct: 188 ILNAEHPDILEFIRAK-----ERGEFANFNTSVAVTDEFMRAVERNDEYGLVNPRTKGEV 242

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                      ++I A  ++ +++T  ++TG P I F D  N R
Sbjct: 243 ---------------------------KRIKAREVFNEIVTYAWKTGDPGIVFMDEINRR 275

Query: 571 SPQQHVGVVHSSNLCTE 587
           +    VG + ++N C  
Sbjct: 276 NTIPAVGKIEATNPCVT 292


>gi|94263673|ref|ZP_01287482.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
 gi|93455978|gb|EAT06133.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/365 (25%), Positives = 155/365 (42%), Gaps = 40/365 (10%)

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
             + C E  L         CNLGSINL     + + D++KL   +R AV  LDNV+DIN 
Sbjct: 660 MLHNCGEQPLLPHES----CNLGSINLARMVTDKEIDWEKLGQVVRKAVHFLDNVVDINN 715

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + + ++    +R IGLG+MGF   L  L IPY+S EA   A+E M FI   A+ AS+E
Sbjct: 716 YPLPEIERVTKLNRKIGLGVMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIE 775

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           L + RG + +F  S++ +                        R              +RN
Sbjct: 776 LGKARGPFPNFSDSIYGR--------------------QDPDR-------------PVRN 802

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEA 819
           +    IAPT TI+ + G S  ++P +   +++  M  D    VN       K+ + +   
Sbjct: 803 ATRTTIAPTGTISILAGCSSGVEPLFAVSFLRRVMDNDELFEVNPLFEAVAKKENFYSHE 862

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLD 878
           +I  + Y+ G++  IE +P   ++I  TA +I P   +E  +  Q+  + A S  + +  
Sbjct: 863 LIRQIAYN-GTVAGIEEVPQKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVSKTINFPH 921

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           E + +++   Y  A+ +  K     R     +   +  K          +  P       
Sbjct: 922 EATEEEVRQSYLLAYELNCKGMTIYRDGCRDNQVLNIGKTDKKAAQQALLQKPTKRDRPT 981

Query: 939 GIPSS 943
            +   
Sbjct: 982 MLTGC 986



 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 136/303 (44%), Gaps = 38/303 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
            F      +L  RY      G  +E PQ    RVA  +A  +       + E   ++FYN
Sbjct: 19  KFSANAQTVLKKRYLKKDEHGKVLETPQQMLWRVAKTVAEADHLYAQGADTEALGLDFYN 78

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 79  LMAGLEFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 138

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 139 SRIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 198

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ +  N  + L +P                    
Sbjct: 199 VK----SDLDLLHNFNLSVAITDEFMRALADNGEYALRNP-------------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     ++ R  SA  ++R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 235 -------RNNEIIRYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNP 287

Query: 585 CTE 587
           C  
Sbjct: 288 CVT 290


>gi|149918798|ref|ZP_01907285.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
 gi|149820399|gb|EDM79815.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
          Length = 1239

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 124/640 (19%), Positives = 215/640 (33%), Gaps = 113/640 (17%)

Query: 287 YERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           ++ D+  +  G +  YD     L    +    PQ F      GL             +Y 
Sbjct: 122 FKHDYFEDEAGARAFYDEMVTMLATQRAAPNSPQWFN----TGLHWAYGITGPAQGHYY- 176

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLG 401
                           +   HPQ  +CF+  V DDL    GI       A L KY  G G
Sbjct: 177 ----CEPETGELRKSTNAYEHPQPHACFIQGVADDLVGEDGIMDLWVREARLFKYGSGTG 232

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCA---------- 450
           ++++ +RG G  +    G+S G++ FL++ +  A A+  G   R+ A             
Sbjct: 233 SNFSQIRGEGEPLS-GGGRSSGLMSFLRIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIE 291

Query: 451 -YLETW-------------------------------HIDVEEFLDLRKNTGDDRRRTHD 478
            Y++                                   D+ +            R+   
Sbjct: 292 QYIDWKVLEEQKVAALVTGSRICNENLNQILRACHVTDADLSDAERFDARKNRPLRKAIK 351

Query: 479 MNTANWIPDLFMKRVTQ----NAGWTLFSPDEVSDLHDLYGKE----------------F 518
                 +P+ +++R  Q     A    F         D YG                   
Sbjct: 352 KARNLQVPENYIQRAIQLAQSGARELEFPEYTTGWDSDAYGTVSGQNSNNSVRLPDAFLH 411

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  +N      R + KV R + A  LW K+    +    P + F    N      + G 
Sbjct: 412 AVDADNTWDLTRRTDGKVARTLRAAELWDKIAFSAWSCADPGLQFDTTINDWHTCPNSGR 471

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------------NQFDYDKLASTIR 626
           +++SN C+E        +   CNL S+NL+    +             +FD D +    R
Sbjct: 472 INASNPCSEYMFL----DDTACNLASLNLMKFVIDASTPGPRSADMLGEFDVDAIRHACR 527

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL+  + +      K    ++ +R +GLG     +   +  +PY S EAV I    
Sbjct: 528 LWTIVLEVSVLMAQFPSHKIAALSYRYRTLGLGYANLGTYFMVRGVPYDSEEAVAICGGV 587

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSL--------------WDQGVFPIDSIGLLAEV 732
              ++    + S ELA + G +  ++ +               +D      +S+  L   
Sbjct: 588 SALMTGTCYATSAELADKHGPFPGYEENRDAMLRVIRNHRRAAYDAPRSDYESLNTLPRG 647

Query: 733 RDEL----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
            D       +   +R  WDE  +R +  G RN+    IAPT TI  +    +  I+P + 
Sbjct: 648 IDAQRCPNYLLTAARGAWDEALQRGEQSGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFA 707

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            +  K    G +  + +  V     R  + ++ I D+  +
Sbjct: 708 LVKFKKLAGGGYFKIINQSVPGALSRLGYTDSQIDDIVRY 747



 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           +I     + D+   +   A          I PM  +   +  Q ++  A S  + + +E 
Sbjct: 842 TIEGAPHLRDEHLPVFDCANRCGRYGKRYIRPMAHVHMMAAAQPFLSGAISKTINMPNEA 901

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +  ++  +YR++W MG+K     R  S  S   S     D    A  + +      ++  
Sbjct: 902 TVGEVKKVYRESWNMGVKAIALYRDGSKLSQPLSAALASDI---AEDLDELEDGAAAIDA 958

Query: 941 PSSCTSDT 948
           P   T+  
Sbjct: 959 PRPATAQP 966


>gi|257141158|ref|ZP_05589420.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
          Length = 596

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 126/629 (20%), Positives = 213/629 (33%), Gaps = 83/629 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +    
Sbjct: 14  VFADRYALPGEHSRAQ---------ACARVARALALAEPVATRSGAARRFYRNLLNGALG 64

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
            S             ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 65  ASRVMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSD 124

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +    A        S GV   L+          +   R+ A  A L   H D+  F   +
Sbjct: 125 IPPASARPDSGQPASPGVCAALERFERIGAQAGERDGRRRAQLAVLRCDHPDLPAFAAAK 184

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A  + D FM+ V Q+  W L  P    D         + A     
Sbjct: 185 CGPKRGHARWTTLGLAVAVTDAFMRAVEQDLPWALRHPAPPRDAPSGALPAEDGA----- 239

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  LWR++++   +   P + F D      P +    + + + C 
Sbjct: 240 --------WTYASVPARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCG 291

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 292 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRVEVRLLDNALDVT 347

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 348 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYVASDLRNHAYAASA 407

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   V+  G+R
Sbjct: 408 ELAAERGAYPLC------------DRQAHLDALRAGPPLPH-------AVCHAVERDGLR 448

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           NS+  + AP A ++   G   S  I+P+   +  ++  +G  T     +  E     L+ 
Sbjct: 449 NSHLTSFAPVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAGTSGAPGMRAENHAHRLFR 508

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +   +  Q ++D      L  
Sbjct: 509 SLRGERAA---------------LPDYFATDADVSPSERLAMRAALQPYVDAGIENTLTL 553

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               S ++++ +   AW   LK+    R+
Sbjct: 554 ASHYSLEEVNALLFAAWRAKLKSVAIRRT 582


>gi|221102330|ref|XP_002161443.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 472

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 207/427 (48%), Gaps = 28/427 (6%)

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQD 175
           + Y      +R ++S S+          +  D   +      +++   +        L  
Sbjct: 59  IQYNLIMDRLRESESESEKTTNEQSNQDVNNDLDKIQEI-LSKIQKTTQPSLWVNDKLSK 117

Query: 176 VSSKIVLS----ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           +S  I+ S    E      +  S SDL    I+     I +E +         +    +E
Sbjct: 118 ISDTILTSINSFENKNQRCNRFSNSDLPFEQIY---NNIVQEHDIQIDITNTFILNFLKE 174

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV-----YLANDLK 286
            +  + ++  K        +  +     I++      +      F+++      L N ++
Sbjct: 175 FIAEIKEEFPKYL-----LITAKLLQENIDKNNDMSPILSDET-FNIISKYHRRLQNSIR 228

Query: 287 YERDFAFEYLGLQILYDRYFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           Y+RD+ F+Y G++ L   Y           IE PQ   MRVA+G+  ++ +     +E Y
Sbjct: 229 YDRDYLFDYFGIKTLERSYLYKLHFTKFKIIERPQHMIMRVAIGIHGEDID---SVIETY 285

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L+S  +F  +TPTLFN+GTR  Q+SSCFL  + D++  IF A+++ A  +K++GG+G  
Sbjct: 286 DLISQKYFTHATPTLFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWAGGIGVH 345

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ I GTNG + GV+P   + N  A  +NQGG+R G++  YLE  H D+ +F 
Sbjct: 346 MSALRCRGSLIRGTNGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHADIFDFC 405

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DLRKNTG+D  R  D+  A W+P LFMKRV  +  W+L  PD+   L+ ++ +E+   YE
Sbjct: 406 DLRKNTGNDDDRARDLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEEYVKLYE 465

Query: 524 NYERQAD 530
            YE + +
Sbjct: 466 MYESEGN 472


>gi|327439699|dbj|BAK16064.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 661

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 201/548 (36%), Gaps = 103/548 (18%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG-- 362
            IE P   F      R A GLA  E  +EKR   F   Y  L S +F+ +   ++ +G  
Sbjct: 119 IIEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFGKFYEELVSMNFIPAGRVIYGAGSE 178

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T     +   +  V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 179 TEVTFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 238

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH----- 477
           G + +L         V QGG R+GA    L  WH D+ EF+  +       R        
Sbjct: 239 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPRILRYLIENTED 298

Query: 478 --------------------DMNTANWIPDLFMK---------------RVTQNAGWTLF 502
                               D      +    ++               ++     +++ 
Sbjct: 299 ESIIRLAKEKLKFKPLTQQEDAMYQGIVNYKNIEGFGGFNEAIIRDAETKLRDGGTYSVH 358

Query: 503 SPD-------------EVSDLHDLYGKEFEIAY---------------ENYERQADRGEI 534
           +PD             E  D  +   ++FE+ +               E +    D  E 
Sbjct: 359 NPDFLTGANISVTLTKEFMDAVE-NDEDFELRFPDVENYTPAQMLDYNEKWHEVGDVREW 417

Query: 535 KV-------FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCT 586
           +        +R I A  LW  +         P I F D  N  +  +  G  V ++N C 
Sbjct: 418 EKLGYPVRTYRTIKAKELWNLINVCATYAAEPGIFFIDNANDMTNAKAYGQKVVATNPCG 477

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E  L       +VCNL ++NL           D+D L  T++  VR+ DNVID   + +E
Sbjct: 478 EQPLAP----YSVCNLAAVNLAKFAKKETKTVDFDALRKTVKVGVRMQDNVIDATPYFLE 533

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + KK     R +GLG+MG    L      Y S E   + DE  + I+  A   SVELA E
Sbjct: 534 ENKKQALGERRVGLGVMGLADLLIYCEKEYGSEEGNALVDEIFKTIAVAAYEESVELATE 593

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG++   +G    +           A +R+        +     +++ +   G+RNS+ +
Sbjct: 594 RGSFPFLEGQTEAE----------TARLREAFINTGFMKKMPQHIRENIVANGIRNSHLL 643

Query: 765 AIAPTATI 772
            +APT   
Sbjct: 644 TVAPTGKQ 651


>gi|83717836|ref|YP_440500.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
 gi|167617291|ref|ZP_02385922.1| hypothetical protein BthaB_13373 [Burkholderia thailandensis Bt4]
 gi|83651661|gb|ABC35725.1| Ribonucleotide reductase, barrel domain [Burkholderia thailandensis
           E264]
          Length = 615

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 126/629 (20%), Positives = 213/629 (33%), Gaps = 83/629 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +    
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPVATRSGAARRFYRNLLNGALG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
            S             ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  ASRVMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSD 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +    A        S GV   L+          +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPASARPDSGQPASPGVCAALERFERIGAQAGERDGRRRAQLAVLRCDHPDLPAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A  + D FM+ V Q+  W L  P    D         + A     
Sbjct: 204 CGPKRGHARWTTLGLAVAVTDAFMRAVEQDLPWALRHPAPPRDAPSGALPAEDGA----- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  LWR++++   +   P + F D      P +    + + + C 
Sbjct: 259 --------WTYASVPARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRVEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYVASDLRNHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   V+  G+R
Sbjct: 427 ELAAERGAYPLC------------DRQAHLDALRAGPPLPH-------AVCHAVERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           NS+  + AP A ++   G   S  I+P+   +  ++  +G  T     +  E     L+ 
Sbjct: 468 NSHLTSFAPVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAGTSGAPGMRAENHAHRLFR 527

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +   +  Q ++D      L  
Sbjct: 528 SLRGERAA---------------LPDYFATDADVSPSERLAMRAALQPYVDAGIENTLTL 572

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               S ++++ +   AW   LK+    R+
Sbjct: 573 ASHYSLEEVNALLFAAWRAKLKSVAIRRT 601


>gi|94265072|ref|ZP_01288839.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
 gi|93454451|gb|EAT04742.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/365 (25%), Positives = 155/365 (42%), Gaps = 40/365 (10%)

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
             + C E  L         CNLGSINL    A+ + D++KL   +R AV  LDNV+DIN 
Sbjct: 660 MLHNCGEQPLLPHES----CNLGSINLARMVADKEIDWEKLGQVVRKAVHFLDNVVDINN 715

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + + ++    +R IGLG+MGF   L  L IPY+S EA   A+E M FI   A+ AS+E
Sbjct: 716 YPLPEIERVTKLNRKIGLGVMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIE 775

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           L + RG + +F  S++ +                        R              +RN
Sbjct: 776 LGKARGPFPNFSDSIYGR--------------------QDPDR-------------PVRN 802

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEA 819
           +    IAPT TI+ +   S  ++P +   +++  M  D    VN       K+ + +   
Sbjct: 803 ATRTTIAPTGTISILASCSSGVEPLFAVSFLRRVMDNDELFEVNPLFEAMAKKENFYSHE 862

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLD 878
           +I  + Y+ G++  IE +P   ++I  TA +I P   +E  +  Q+  + A S  + +  
Sbjct: 863 LIRQIAYN-GTVAGIEEVPQKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVSKTINFPH 921

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           E + +++   Y  A+ +  K     R     +   +  K          +  P       
Sbjct: 922 EATEEEVRQSYLLAYELNCKGMTIYRDGCRDNQVLNIGKTDKKAAQQALLQKPTKRDRPT 981

Query: 939 GIPSS 943
            +   
Sbjct: 982 MLTGC 986



 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 38/303 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
            F      +L  RY      G  +E PQ    RVA  +A  +       + E  A++FYN
Sbjct: 19  KFSANAQTVLKKRYLKKDEHGKVLETPQQMLWRVARTVAEADHLYTQGADTEALALDFYN 78

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 79  LMAGLEFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 138

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 139 SRIRPKNDVVHSTKGVSSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 198

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ +  N  + L +P                    
Sbjct: 199 VK----SDLDLLHNFNLSVAITDEFMRALADNGEYALRNP-------------------- 234

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +V +  SA  ++R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 235 -------RNNEVVKYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNP 287

Query: 585 CTE 587
           C  
Sbjct: 288 CVT 290


>gi|238584481|ref|XP_002390574.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
 gi|215454140|gb|EEB91504.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
          Length = 260

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 20/271 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   +++ C GL    V+   V  +  + +Y G++  +L+     
Sbjct: 4   VFKRDGRKERIQFDKITSRIDKLCYGLDMNYVNPIEVTQKVVQGVYQGVTTVELDNLAAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L  K P+YA + AR  +  L +E         +K     ++ LY     +    G 
Sbjct: 64  TAAYLTTKHPDYAVLAARIAISNLHKET--------KKNFSAVIKDLYEYVNPKN---GR 112

Query: 265 KARLLHESMMDFDLVY---LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            + ++ +   +    +   L + + Y RDF + + G + L   Y L ING   E PQ   
Sbjct: 113 PSGMIAQDTYEIIQEHKETLDSAIIYNRDFNYNFFGFKTLERSYLLRINGRVAERPQHMI 172

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MR A+G+  ++ E   R ++ Y L+S  +F  ++PTLFN+GT H QLSSCFL  +  D +
Sbjct: 173 MRCAVGIHGRDIE---RVLQTYELMSEKYFTHASPTLFNAGTPHAQLSSCFLVAMKDDSI 229

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            GI+  L+E AM++K +GG+G     +R  G
Sbjct: 230 EGIYDTLKECAMISKCAGGIGLHIHNIRATG 260


>gi|268323545|emb|CBH37133.1| putative intein containing ribonucleotide reductase, large subunit
           [uncultured archaeon]
          Length = 919

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 155/330 (46%), Gaps = 42/330 (12%)

Query: 579 VHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +++ +    I  N   +       CNLGSIN+     N + D+++L   + ++VR LD+V
Sbjct: 592 INAFDANGFIVHNCGEQPLLPYDSCNLGSINVSKFVENGEIDWERLKEAVWSSVRFLDDV 651

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + + K +K    +R IGLG+MG    L  L I Y S +AV +A++ M+FI+  A 
Sbjct: 652 IDENRYPLSKIEKMTKANRKIGLGIMGLAELLIKLKIAYDSKDAVLMAEKLMQFITNEAR 711

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S EL  E+G++ +F+ S+W       D+                              
Sbjct: 712 QCSTELGLEKGSFPNFELSVWST----YDA------------------------------ 737

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             MRN+    IAPT TI  I   S  I+P +   +V++ M G    +N       K++  
Sbjct: 738 --MRNATVTTIAPTGTIGIIGNCSSGIEPLFAVAFVRNVMGG-MLEINKLFEEIAKEKGF 794

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           + + +I+++    GSI +I  IP+D+K++  TA +I P W +   +  Q++ D A S  +
Sbjct: 795 YSKELIAEI-AKRGSIQDIAGIPEDIKRVFVTALDISPEWHVRMQAAFQRYTDNAVSKTV 853

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            L  + +   +  ++  A+ +  K     R
Sbjct: 854 NLPSDATRGDVKRVFLLAYKLKCKGVTVYR 883



 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 40/329 (12%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             +       D+  L   L  + D        ++L  RY L     R IE P   F RVA
Sbjct: 4   PYISYHQQRADIQGLKKLLSDKSDLNLSANAAEVLKRRYLLKDELERVIETPSQMFARVA 63

Query: 326 MGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             +A  E          +K    FY L+ S  F+ ++PTL N+GT   QL++CF+  V D
Sbjct: 64  KAIARAEQNYGKSKAEVKKIEQRFYLLMHSLEFLPNSPTLMNAGTDLGQLAACFVIPVED 123

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIFGA+++ A + +  GG G  ++ +R  G  +  T G + G + F++V +     +
Sbjct: 124 SIEGIFGAVKDMARIHQSGGGTGFSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVI 183

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QGGKR+GA    +   H D+ EF+  +     +R    + NT+  + D FM  V +N  
Sbjct: 184 KQGGKRRGANMGIICADHPDILEFIRAK-----ERGEFANFNTSVAVTDEFMHAVDRNEE 238

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           + L +P    ++                           RKI A  ++ +++T  ++ G 
Sbjct: 239 YELINPRTKEEV---------------------------RKIKAGEVFNEIVTYAWKIGD 271

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           P I F D  N  +P   VG + ++N C  
Sbjct: 272 PGIIFLDEINRHNPVSAVGRIEATNPCVT 300


>gi|226331037|ref|ZP_03806555.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
 gi|225201832|gb|EEG84186.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
          Length = 326

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 157/335 (46%), Gaps = 23/335 (6%)

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D     N
Sbjct: 1   MESIGRSVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYAN 60

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N   
Sbjct: 61  QLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKVRIKTLSLGVVIPDITFELAKRNEDM 120

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP +V  ++ +   E  I+ E Y    +  +I+  +KI A   ++ +  + FE+G+P
Sbjct: 121 YLFSPYDVERVYGVPMSEISIS-EKYSEMVNNAQIRK-KKIKAREFFQTLAEIQFESGYP 178

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINL 607
           +I F+D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+
Sbjct: 179 YIMFEDAVNRAN--PIAGRINMSNLCSEILQVNSASEYHPDLSYRHIGHDISCNLGSMNI 236

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                    D    A T+ TA+R L NV ++    ++   +K N    AIGLG M     
Sbjct: 237 AM-----AMDSPNFAHTVSTAIRALSNVSEMTKIESVPSIEKGNLASHAIGLGQMNLHGY 291

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
           L    I Y S EA++  +    FI    +  S+++
Sbjct: 292 LARERIYYGSEEALDFTNIYF-FIPSLIMRYSLQI 325


>gi|167574090|ref|ZP_02366964.1| hypothetical protein BoklC_29910 [Burkholderia oklahomensis C6786]
          Length = 610

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 111/582 (19%), Positives = 209/582 (35%), Gaps = 73/582 (12%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQENAM 392
           A  FY  L +               +   ++SCF+  +            +  A+ E  +
Sbjct: 70  ARRFYRNLLNGALGAGRIMARAGAAQDQTMASCFVHPIRAPAALTRFHPDLDRAIDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                G +G D++ +    A        S GV   L   +       +   R+ A  A L
Sbjct: 130 TLAMGGDVGYDFSAIPPASARPEAEQSTSPGVCAALDRFDRIGAQAGERDGRRRAQLAVL 189

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
              H D+  F+  ++       R   +  A  + D FM+ + Q+  WTL  P    D   
Sbjct: 190 RCDHPDLLAFVAAKRGHA----RWETLELAVAVTDAFMQAIEQDRPWTLRHPAPPHDAAS 245

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                 + A               +  + A  LWR+++    +   P + F D  +  +P
Sbjct: 246 GALPAADGA-------------WTYATVPARHLWREIVAATRDGEGPGLVFVDAIDAANP 292

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTI 625
            +    + +++ C    L         C LG+++L     N        +FD+    + +
Sbjct: 293 LRGRERIDATSPCGAQPLPPYGS----CMLGAVDLSRFVRNPFGAGGEPRFDFAAFDAAV 348

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A E+   
Sbjct: 349 RVEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMTRY 408

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
               +  HA +AS ELA ERGA+       +      +D++     +   +         
Sbjct: 409 IASDLRNHAYAASAELAAERGAFPLCD--RYA----HLDALHAGPPLPHAVCHA------ 456

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                  ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  +G  T   
Sbjct: 457 -------IERDGLRNSHLTSFAPVVGVSLAFGDNCSPGIEPARAWIEHRTVRTG--TTGA 507

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +  E     L+       +                L    AT  ++ P   +   +  
Sbjct: 508 PVMRAENHAHRLFRALRGERVA---------------LPDYFATDADVAPGDRLAMRAAL 552

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q ++D   +  L L    S ++++ +   AW   LK+    R
Sbjct: 553 QPYVDAGVANTLTLAGHHSLEEINALLFGAWRAKLKSVAIRR 594


>gi|167567021|ref|ZP_02359937.1| hypothetical protein BoklE_30966 [Burkholderia oklahomensis EO147]
          Length = 537

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 109/578 (18%), Positives = 207/578 (35%), Gaps = 73/578 (12%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQENAMLAKY 396
           Y  L +               +   ++SCF+  +            +  A+ E  +    
Sbjct: 1   YRNLLNGALGAGRIMARAGAAQDQTMASCFVHPIRAPAALTRFHPDLDRAIDEARLTLAM 60

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            G +G D++ +    A        S GV   L   +       +   R+ A  A L   H
Sbjct: 61  GGDVGYDFSAIPPASARPEAEQSTSPGVCAALDRFDRIGAQAGERDGRRRAQLAVLRCDH 120

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  F+  ++       R   +  A  + D FM+ + Q+  WTL  P    D       
Sbjct: 121 PDLLAFVAAKRGHA----RWETLELAVAVTDAFMQAIEQDRPWTLRHPAPPHDAASGALP 176

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
             + A               +  + A  LWR+++    +   P + F D  +  +P +  
Sbjct: 177 AADGA-------------WTYATVPARHLWREIVAATRDGEGPGLVFVDAIDAANPLRGR 223

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAV 629
             + +++ C    L         C LG+++L     N        +FD+    + +R  V
Sbjct: 224 ERIDATSPCGAQPLPPYGS----CMLGAVDLSRFVRNPFGAGGEPRFDFAAFDAAVRVEV 279

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A E+       
Sbjct: 280 RLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMTRYIASD 339

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  HA +AS ELA ERGA+       +      +D++     +   +             
Sbjct: 340 LRNHAYAASAELAAERGAFPLCD--RYA----HLDALHAGPPLPHAVCHA---------- 383

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
              ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  +G  T     + 
Sbjct: 384 ---IERDGLRNSHLTSFAPVVGVSLAFGDNCSPGIEPARAWIEHRTVRTG--TTGAPVMR 438

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E     L+       +                L    AT  ++ P   +   +  Q ++
Sbjct: 439 AENHAHRLFRALRGERVA---------------LPDYFATDADVAPGDRLAMRAALQPYV 483

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           D   +  L L    S ++++ +   AW   LK+    R
Sbjct: 484 DAGVANTLTLAGHHSLEEINALLFGAWRAKLKSVAIRR 521


>gi|319645697|ref|ZP_07999928.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392244|gb|EFV73040.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 401

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 178/428 (41%), Gaps = 59/428 (13%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  +  E +IA + Y+   +   ++  +K +A  L  K+  +  E+G+P+
Sbjct: 1   MFYPYSVYKEYRQHLDEMDIA-KMYDELVENLNVRK-KKANARKLLEKLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAV-----CNLGSINLL 608
           + F D  N      H+ +V  SNLC+E+       T     EE  +     CNLGSIN+ 
Sbjct: 59  LMFTDNVNRFHANSHISMVKFSNLCSEVLQSSKVSTYTDYGEEDDIGLDISCNLGSINIF 118

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               N     D + +T++ A+  L +V +  N        K+N   R++GLG M     L
Sbjct: 119 NVMKN-----DSIKNTVKLAIDALTHVSNKTNITNAPAVAKANKLMRSVGLGAMNLHGFL 173

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y S EA + A+     ++F+++  S+E+A+E    Y  F+GS +  G +     
Sbjct: 174 AQNGIAYESEEARDFANTFFMMMNFYSLERSMEIAKEAGETYYQFEGSTYKSGEYFKKYE 233

Query: 727 GLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                 + E         +  +   W +LK+ V   G+ +S   AIAPT +I+ +   + 
Sbjct: 234 EQSFSPKYEKVKKLFGDQHIPTIEDWKKLKQAVMKYGLYHSYRQAIAPTGSISYVQSSTA 293

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            + P  + +  ++  +                                     +  +   
Sbjct: 294 GVMPIMERIEERTYGNSKTYYP-------------------------------MPGLSAK 322

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKT 899
               +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT
Sbjct: 323 NWFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKT 382

Query: 900 TYYLRSRS 907
            YY R++ 
Sbjct: 383 LYYARTKD 390


>gi|222831854|gb|EEE70331.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/248 (39%), Positives = 152/248 (61%), Gaps = 8/248 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +    HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA  +           + 
Sbjct: 96  RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155

Query: 147 I-MMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             + D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I 
Sbjct: 156 FNVTDNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAIL 215

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G+
Sbjct: 216 AARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARGI 269

Query: 265 KARLLHES 272
           +A LL E 
Sbjct: 270 EAELLDEK 277


>gi|326914626|ref|XP_003203625.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Meleagris gallopavo]
          Length = 221

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 2/217 (0%)

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  +    W  LK+++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +SG
Sbjct: 4   VTPSDLWDWKALKEKIAKHGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSG 63

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +R LW+E M + +  H+GSI NI  IP DLK+++ T +EI    ++
Sbjct: 64  EFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVL 123

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 124 KMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 183

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              +        ++     +   +  S  +  EC +C
Sbjct: 184 NK-EKLREREKASEEEKERNKAAMVCSLENRDECMMC 219


>gi|304314793|ref|YP_003849940.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588252|gb|ADL58627.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 573

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/366 (26%), Positives = 162/366 (44%), Gaps = 44/366 (12%)

Query: 552 MLFETGHPWITF---KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---TAVCNLGSI 605
             F +G  + TF   K           V   ++ N    I  N   +       CNLGSI
Sbjct: 226 SSFNSGERFSTFLSLKSNGYEDVYDACVAGANAFNANGFIVHNCGEQPLLPYESCNLGSI 285

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL    + +  ++++L  T+ TAV  LDNVID+N + + + ++     R IGLG+MGF  
Sbjct: 286 NLSLMVSASGVNWERLRRTVHTAVHFLDNVIDVNSYPLPEVREMTLKTRKIGLGVMGFAD 345

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L +PY S EA+ +A+  M FI   A  AS +LA ERG++  F GS+WD+  F    
Sbjct: 346 MLIKLGVPYNSGEALGVAERVMSFIEGEARRASSDLAAERGSFPEFSGSMWDKMGFE--- 402

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                                          GMRN+    IAPT +++ I G S  I+P 
Sbjct: 403 -------------------------------GMRNATLTTIAPTGSLSIIAGTSSGIEPL 431

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   + ++ +   FT  N       + R   D     ++    G++  +  +P  ++++ 
Sbjct: 432 FAVSFTRNILGRKFTENNPLFERIARGRLKRDT---FEMIISKGTLHGVSGVPGKIRRLF 488

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA EIDP++ ++  +  Q+ +D A S  +    + S    + ++  A+ +G K     R
Sbjct: 489 VTAHEIDPVFHVKMQAAFQRHVDNAVSKTVNLPPDASINDAERVFGAAYELGCKGITIYR 548

Query: 905 SRSATS 910
             S  +
Sbjct: 549 YGSKMN 554



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 35/168 (20%)

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G + G + F++V +     + QGG+R+GA    L   H D+  F++ + + G       +
Sbjct: 2   GVASGPVSFMRVFDVAVEVIKQGGRRRGANMGVLHVSHPDIFGFIEAKTSEGP----LRN 57

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  +PD FM    ++    L +P                                  
Sbjct: 58  FNLSVSVPDRFM----EDRKIDLINPRTGE---------------------------TVD 86

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            + +  ++++++   + +G P + F+D  N R+P   +G + ++N C 
Sbjct: 87  SVPSREIFKRIVKAAWRSGDPGMIFEDRINRRNPTPSLGRIEATNPCI 134


>gi|9630286|ref|NP_046713.1| ribunucleotide reductase large subunit [Bacillus phage SPBc2]
 gi|50812254|ref|NP_389888.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|75077840|sp|O64173|NRDEB_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
           alpha; AltName: Full=Ribonucleotide reductase large
           subunit; Contains: RecName: Full=SPBc2 bnrdE intein
 gi|81341995|sp|O31875|NRDEB_BACSU RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
           alpha; AltName: Full=Ribonucleotide reductase large
           subunit; Contains: RecName: Full=Bsu nrdEB intein
 gi|3025639|gb|AAC13134.1| ribunucleotide reductase large subunit [Bacillus phage SPbeta]
 gi|32468777|emb|CAB13898.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1084

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 168/390 (43%), Gaps = 18/390 (4%)

Query: 209 LIEKEPNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +    PN+ K+    ++        +  +E + + +             L  +       
Sbjct: 1   MTNTIPNWIKLNNEIMIQKDGKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKN 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQ 318
           +  +   L +    F+ +     + Y   F F  ++     Y+ Y L  N     +E  +
Sbjct: 61  DYYEEEFLSKYT--FEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
                VA+  A  + EK   AVE  + +    +  +TPT  N+G  R  ++ SCFL  V 
Sbjct: 119 DRVSIVALYCADGDYEK---AVEEVHTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVG 175

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++    
Sbjct: 176 DSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFRY 235

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F++   ++ 
Sbjct: 236 ADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKFIELAREDK 295

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            + +F P  V   +  Y  E +I  E Y+   +   ++  +  +A  L  ++  +  E+G
Sbjct: 296 DYYMFYPHSVYKEYGQYLDELDI-NEMYDELVENPRVRKAKG-NARKLLEQLAILRSESG 353

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +P+I F D  N   P +H+  V  SNLC  
Sbjct: 354 YPYIMFADNVNKVHPNEHISKVKFSNLCVT 383



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 45/337 (13%)

Query: 583  NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            ++ T+            CNLGS+N++   +N       +AST+R A+  L  V    N  
Sbjct: 776  SVYTDYDKEDEIGLDISCNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIV 830

Query: 642  TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                  ++N   R+IGLG M     L   +I Y S EA + A+     ++F+++  S+E+
Sbjct: 831  NAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEI 890

Query: 702  AQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVK 754
            A+E    Y  F GS +  G +       D      +V+      +  +   W +LK+ V 
Sbjct: 891  ARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVM 950

Query: 755  TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              G+ +S   AIAPT +I+ +   +  + P  + +  ++  +         L        
Sbjct: 951  KYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL-------- 1002

Query: 815  LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                           S  N           +  A+++D   +++  +  Q+ +DQ  S  
Sbjct: 1003 ---------------SAQNW--------FFYKEAYDMDMFKVVDLIATIQQHVDQGISFT 1039

Query: 875  LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 1040 LFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 1076


>gi|308172805|ref|YP_003919510.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605669|emb|CBI42040.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 384

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/406 (23%), Positives = 164/406 (40%), Gaps = 58/406 (14%)

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y++  D   ++   KI A  L  K+  +  E+G+P+I F+   N      HV  V  S
Sbjct: 5   EMYDQLVDNPAVRK-DKIDARKLLEKLAVLRSESGYPYIMFEGNVNAEHANGHVSKVKFS 63

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+E+   S   E               CNLGS+N+     N  F      + ++ +V 
Sbjct: 64  NLCSEVLQASQVSEYTDYGEEDEIGLDISCNLGSLNVANVMKNGDF-----ETIVKLSVD 118

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V +  N        ++N   R+IGLG M     L    I Y S EA + A+     
Sbjct: 119 ALTRVSETSNIKNAPAVARANREMRSIGLGAMNLHGYLAQNGIAYESEEARDFANVFFAL 178

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTS 742
           +++ ++  S+ELA+E    +  F+GS +  G +    I      + E        +    
Sbjct: 179 VNYWSLVRSMELAKETGSTFEGFEGSTYADGSYFDKYIAEDFRPKTEKVAKLFEGVEIPK 238

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R+ W  L+  V   G+ +S  +AIAPT +I+ +   + S+ P  + +  ++  +      
Sbjct: 239 RIDWVRLEVNVMLHGLYHSYRLAIAPTGSISYVQSATASVMPIMERIEERTYGNSKTYYP 298

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L                       S  N           +  A+++D   +++  + 
Sbjct: 299 MPGL-----------------------SPQNW--------FFYKEAYDMDMFKVVDMIAT 327

Query: 863 RQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            Q+ +DQ  S  L+  D  + + L+ I   A   G+KT YY R++ 
Sbjct: 328 IQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKD 373


>gi|239909099|ref|YP_002955841.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
 gi|239798966|dbj|BAH77955.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
          Length = 1096

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 161/362 (44%), Gaps = 40/362 (11%)

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---ANNQFDYDKLASTIRTAVRVLDN 634
              +  L               CNLGSINL   +   A +  D+  LA T+  AVR LDN
Sbjct: 626 RFDACGLVAHNCGEQPLLPYEACNLGSINLSVFYDPSAPDGIDWAGLAETVHLAVRFLDN 685

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID + + +++  +    +R IGLG+MGF   L+LL IPY S EA+ +A++ ME +   A
Sbjct: 686 VIDASRYPLDQITEMVRANRKIGLGVMGFADLLYLLRIPYDSTEALTLAEKLMETVQAEA 745

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            SAS  LA ERGA+ ++  S++ +                                    
Sbjct: 746 RSASKTLAAERGAFPAYPESIYGKRNL--------------------------------- 772

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQR 813
               RN+    IAPT T++ I G S  I+P +   + +  M G+  V  N   V  L++ 
Sbjct: 773 -GPYRNATTTTIAPTGTLSIIAGCSSGIEPLFALSFARHVMDGEKLVEANPHFVTALREA 831

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               +A++ ++    GSI +I  +P+ L+++  TA +I+P+W ++  +  QK+ D A S 
Sbjct: 832 GAHSDALMEEV-TRKGSIAHIGLLPEALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSK 890

Query: 874 NLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
            +   +  + +++  IY  A+ +G K     R    ++    T  G             N
Sbjct: 891 TVNLPNSATKEEIREIYWLAYELGCKGVTVYRDGCKSNQVLCTGDGAPVDPAKPQSKVRN 950

Query: 933 SS 934
             
Sbjct: 951 RP 952



 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 39/296 (13%)

Query: 300 ILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHF 351
           +L  RY      G+  E  Q  F RVA  +A +E +        E  A +FY+L+    F
Sbjct: 3   VLSKRYLKKSPEGAPEEDVQGLFWRVAGAIASEEAKYAASPWQPEALARKFYDLMVGMRF 62

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   
Sbjct: 63  LPNSPTLMNAGTPLGQLAACFVLPVGDSMDEIFDAVKFAALIHKSGGGTGFSFSRLRPKK 122

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++  G+
Sbjct: 123 SRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFIACKEREGE 182

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + + FM+ V +   + L  P + S                       
Sbjct: 183 ----LTNFNISVALTERFMQAVEKGEDYDLIDPRDGS----------------------- 215

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   +SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C  
Sbjct: 216 ----KRGSLSAPEVFALLVRKAWESGDPGIVFLDRINRDNPTPALGAIESTNPCVT 267


>gi|326914624|ref|XP_003203624.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Meleagris gallopavo]
          Length = 226

 Score =  243 bits (621), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 105/231 (45%), Positives = 148/231 (64%), Gaps = 7/231 (3%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           TNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R
Sbjct: 1   TNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQR 60

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +
Sbjct: 61  ARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQG-----R 115

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V R + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 116 VRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 175

Query: 596 ETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           E AVCNL S+ L  +    + +D+ KLA   +  VR L+ +IDIN + + +
Sbjct: 176 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 226


>gi|67008230|emb|CAH18520.1| ribonucleoside-diphosphate reductase alpha chain [Rhodobacteraceae
           bacterium 198]
          Length = 340

 Score =  243 bits (621), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 156/370 (42%), Gaps = 59/370 (15%)

Query: 573 QQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+EI   +++ E               CNLGS+N+         D   
Sbjct: 2   NPIAGRISMSNLCSEILQVNTASEFTDDLSYAQMGTDISCNLGSMNIAR-----TMDGGD 56

Query: 621 LASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           LA T+ TA+R L+ V +++   ++   +K N    AIGLG M     L    I Y S E 
Sbjct: 57  LAGTVGTAIRALNAVSEMSAIDSVPSIRKGNDEGHAIGLGQMNLHGYLARERIYYGSAEG 116

Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLA-------- 730
           ++  +     + FHA+SAS  LAQE G  +  F+ S +  G F    +            
Sbjct: 117 IDFTNIYFCTVLFHALSASNALAQEIGTRFKGFEDSTYADGSFFAKYVDRDWLPETDRVR 176

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E+ +   +   SR  W  L  +VK  G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 177 ELFEGAGIPVPSREDWSALCDKVKEHGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIE 236

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           ++                         E  I  + Y          + ++  + +  A++
Sbjct: 237 IRK------------------------EGKIGRVYYPA------PYMTNENLEYYRDAYD 266

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I P  +I++ +   + +DQ  SL L+   E S + ++     AW  G+KT YY+R R   
Sbjct: 267 IGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIRLRQ-Q 325

Query: 910 SVEKSTLKGV 919
           ++E + ++G 
Sbjct: 326 ALEGTEVEGC 335


>gi|157310980|ref|YP_001468976.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832128|gb|ABF57528.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 865

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 173/386 (44%), Gaps = 23/386 (5%)

Query: 216 YAKVTARFLLEK------LRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           Y+ + A   L        L ++          +        H ++    ++    ++   
Sbjct: 6   YSDLNAEVKLLDQQGKPQLHKDKDSVRAYFLEHVNKNTVFFHSLEEK-VDHLTEEVQLWD 64

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           K  +L       DL  L     Y   F F  Y+G    Y+ Y L  N  +    + +  R
Sbjct: 65  KDVVLRYGF--EDLKRLMKQ-AYGHKFRFKTYMGALKFYNSYALKTNDGKR-YYERYEDR 120

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           V +  A+  +E  + A    +L+    F  +TPT  N+G     +  SCF+  V D +  
Sbjct: 121 VVLT-AIHYSEDFEHAESLVDLIIKGIFQPATPTFLNAGLLDAGKPVSCFILDVQDTMGS 179

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I   +Q++  L+K  GG+G  ++ +R  GA I G  G++ GVIP +K+  D+    NQ G
Sbjct: 180 IGRIVQDSLQLSKRGGGVGIGFSNLREAGAPIKGREGQASGVIPVMKILEDSFSYSNQLG 239

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +   ++    LF
Sbjct: 240 ARQGAGAVYLNAHHPDILAFLDTKRENADEKIRIKTLSLGVIVPDVTFRLAKESEPMALF 299

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561
           SP +++ ++     EF +  E Y       + ++ +  I A  L++ +  + FE+G+P++
Sbjct: 300 SPYDINKVYGKSLSEFSVT-EMY--DTWLKDDRIAKTFIDARKLFQTIAEVQFESGYPYL 356

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTE 587
            F D  N  +P  ++G + SSNLC  
Sbjct: 357 MFDDAANRGNPAPNIGRIKSSNLCVT 382



 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 154/377 (40%), Gaps = 61/377 (16%)

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFAN 613
                    + G+V  +  C+EI   SS  E               CNLGS+N+    A 
Sbjct: 522 TVENGHSVIYNGLVTGN--CSEIFQPSSPSEFSEDSFFTKTGRDISCNLGSLNVARLSA- 578

Query: 614 NQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D D   + ++ A + L+ V +     +     + N   RAIGLG M    AL  L +
Sbjct: 579 --LDTDDFHTAVKDAYKFLNQVAVQTEIGSSPTVVRGNRESRAIGLGQMNLHGALIELGL 636

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW--------DQGVFPI 723
            Y S EA +  +  M  ++F  ISASV+ A+E G+ +   +GS W        D+ +  I
Sbjct: 637 DYNSQEARDWFEWYMMRVTFSVISASVDKAEEMGSGFKGAEGSRWGDIISGHRDRAMALI 696

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D I       +   +  +    W  L +R +  G+ N N  AI PT +I+ I   + SI 
Sbjct: 697 DRITASGNAMENSDVAWS--YEWLRLLERFRLHGIYNQNLQAIPPTGSISYINHATASIH 754

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + V+                         E  +  + Y    + N      +  +
Sbjct: 755 PVTSPVEVRK------------------------EGKLGRVYYPQYGVTN------ENVE 784

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYY 902
              +A+ I P  +I+  +    W+DQ  SL L + D  + + ++     A   GLK+ YY
Sbjct: 785 SIDSAYAIGPNPIIDMYAVASPWVDQGMSLTLFFPDTATTRDINRAQIYAHKKGLKSLYY 844

Query: 903 LRSRSATSVEKSTLKGV 919
           +R+ SA SVE + ++G 
Sbjct: 845 IRT-SAKSVEGTEVEGC 860


>gi|237798941|ref|ZP_04587402.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021795|gb|EGI01852.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 226

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 5/219 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
               +  + A   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 12  TGAPQASQ-APQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +          P ++I + DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVR-APDEQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR 
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARL 225


>gi|213581375|ref|ZP_03363201.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 305

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 47/329 (14%)

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E A+C L + NL A         D+L      AVR LD ++D   + I  AK+     R
Sbjct: 1   GEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRR 55

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  +
Sbjct: 56  TLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNET 115

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            + +G+ PID+         +  +N      W++L++ +KT G+RNS   A+ P+ T + 
Sbjct: 116 TYAKGILPIDTYKKDL----DAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQ 171

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I   +  I+P    + +K++  G    V         +       ++ ++  +DG +   
Sbjct: 172 ISNATNGIEPPRGYVSIKASKDGILRQVVPDY-----EHLKDAYELLWEMPNNDGYLQ-- 224

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDF 887
                                        QK+IDQ+ S N   D    PSGK    +L  
Sbjct: 225 ------------------------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK 260

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
               A+  G+KT YY  +R      +  L
Sbjct: 261 DLLTAYKFGVKTLYYQNTRDGAEDAQDDL 289


>gi|332087396|gb|EGI92524.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 348

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 159/382 (41%), Gaps = 63/382 (16%)

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLA 609
            ++D  N  +     G ++ SNLC+EI   +S+ E               CNLGS+N+  
Sbjct: 1   MYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIA- 57

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +  D    A T+ TAVR L  V D++   ++   +  N    AIGLG M     L 
Sbjct: 58  ----HTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLA 113

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI- 726
              I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +    + 
Sbjct: 114 REGIAYGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQ 173

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + E+     +   +R  W +L+  V   G+ N N  A+ PT +I+ I   +
Sbjct: 174 GNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHAT 233

Query: 780 QSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + ++    +G       F+ NE                             
Sbjct: 234 SSIHPIVAKVEIRKEGKTGRVYYPAPFMTNE----------------------------- 264

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                ++   +EI    +I++ +   + +DQ  SL L+  D  + + ++     AW  G+
Sbjct: 265 --NLALYQDTYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 322

Query: 898 KTTYYLRSRSATSVEKSTLKGV 919
           KT YY+R R    +E + ++G 
Sbjct: 323 KTLYYIRLRQMA-LEGTEIEGC 343


>gi|89893068|ref|YP_516555.1| hypothetical protein DSY0322 [Desulfitobacterium hafniense Y51]
 gi|219666336|ref|YP_002456771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
 gi|89332516|dbj|BAE82111.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536596|gb|ACL18335.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
          Length = 1153

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 148/347 (42%), Gaps = 41/347 (11%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAV 629
             +    ++ +               CNLGSINL             D+++L    R A 
Sbjct: 635 PGINAFDANGIYVHNCGEQPLLPNEACNLGSINLKLMVTEKNGKVVVDWERLGQITRLAT 694

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LDNVI+ N + +   ++    +R IGLG+MGF   L LL   YAS +AVE A++ M F
Sbjct: 695 RFLDNVIEANTYPLPSIEEMVKGNRKIGLGVMGFADMLILLQTSYASEDAVEYAEKVMNF 754

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A   S  LA+ERG + +++GS++D GV P                           
Sbjct: 755 IQTEARLESQRLAEERGTFPNYQGSIYD-GVRP--------------------------- 786

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                   +RN+    IAPT TI+ ICG S  ++P +   Y K+ M G   +  + +   
Sbjct: 787 --------LRNATLTTIAPTGTISMICGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQS 838

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L +   ++   +       G++     +P+ ++++  TA EI+P W I   +  QK+ D 
Sbjct: 839 LAEDYGFNSPELMRKIAEKGTVLGFPEVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDN 898

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           A S  +   +E + + +   Y  A  +  K     R  S      ST
Sbjct: 899 AVSKTINFANEATHEDIAKAYELAHELNCKGLTVYRDGSREEQVLST 945



 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 131/313 (41%), Gaps = 38/313 (12%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-------TE 334
            +  K             IL  RY    NG   E P+    RVA  +A  E        E
Sbjct: 5   ESAPKAWLKANLTPNARVILEKRYLKQENGEVAESPEDMLYRVASIIAQVEETFGKTKKE 64

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            ++ A  FY +++   FM ++PTL N+G    QLS+CF+  V D +  IF A++  A++ 
Sbjct: 65  VKELAKSFYEMMAKLEFMPNSPTLMNAGRDLGQLSACFVLPVEDSMEEIFDAIKSAAIIH 124

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG G  ++ +R   + +  T G + G + F+KV N    AV QGG R+GA    L  
Sbjct: 125 KSGGGTGFSFSRLRPKNSTVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRV 184

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF+  +    +D +   + N +  I + FMK V +   + L  P        LY
Sbjct: 185 DHPDIREFITCK----EDNKEITNFNISVGITEEFMKAVQEKRHYNLIDPHTKEADGQLY 240

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                                      A  +++ ++   +  G P I F D  N  +P  
Sbjct: 241 ---------------------------APEVFQLIVDHAWRNGEPGIIFLDRLNRDNPTP 273

Query: 575 HVGVVHSSNLCTE 587
            +G + ++N C  
Sbjct: 274 QLGEIEATNPCVT 286


>gi|242026167|ref|XP_002433270.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212518899|gb|EEB20532.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 237

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 140/237 (59%), Gaps = 6/237 (2%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA 
Sbjct: 3   EDSIDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTAR 62

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV Q
Sbjct: 63  YVDQGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQ 122

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W L  P     L D +G+EF   Y +YE +         +K+ A +LW  ++    E
Sbjct: 123 NQEWCLMCPKICPGLSDCWGEEFNKLYLSYEEKG-----LYVKKVKAQSLWYAIIESQVE 177

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ +KD CN +S QQ++G +  SNLCTEI   SS EE  +      NLL    
Sbjct: 178 TGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVKLVYYFFKNLLHIMK 234


>gi|329113328|ref|ZP_08242109.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697153|gb|EGE48813.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 352

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 121/402 (30%), Positives = 180/402 (44%), Gaps = 61/402 (15%)

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----TAVCNLGSINLLAHFANNQFDY 618
            +       +     V +SNLC+EITL +  +      TAVC L S+NL         ++
Sbjct: 1   MNNARPEHHKLAGLEVKTSNLCSEITLPTGIDHHGKARTAVCCLSSLNL-----ETWDEW 55

Query: 619 DKLASTIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                 I   +  LDNV    ID     + +AK +    R++GLG+MGF + L   ++P+
Sbjct: 56  KDNPQFIEDVMLFLDNVLQDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHTFLQSRNVPF 115

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A     +  + I   A +AS +LA+ RG     +      GV              
Sbjct: 116 ESVIAKVWNRKIFKHIREQADAASRKLAELRGPCPDAEE----YGVME------------ 159

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKS 793
                                   R SN MAIAPTA+I+ I G  S  I+P   N++++ 
Sbjct: 160 ------------------------RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQK 195

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG FTV N  L   L+++      + S +    GS+ +++ +    K +  TAFE+D 
Sbjct: 196 TLSGSFTVRNRHLQKLLEEKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQ 255

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            W++E A+ RQ +I QAQS+NL+L     K  L  I+  AW  GLK+ YY RS S    +
Sbjct: 256 RWIVEHAADRQPFICQAQSVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLSIQRAD 315

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             T+  V  K +   V + +SS  S G  SS     EC  CQ
Sbjct: 316 --TVSNVLAKND---VMNVDSSQASSGSASSGNDYEECLACQ 352


>gi|21673413|ref|NP_661478.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           tepidum TLS]
 gi|21646513|gb|AAM71820.1| ribonucleotide reductase family protein [Chlorobium tepidum TLS]
          Length = 1129

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 143/694 (20%), Positives = 247/694 (35%), Gaps = 119/694 (17%)

Query: 308 HINGSRI------EMPQAFFMRVA-MGLALKETEKEKRAVEF-----YN----LLSSFHF 351
              G R       E  QAF+  V  M LA        +         Y         F+ 
Sbjct: 77  QDWGKRYNYFDSDEDAQAFYDEVVYMLLAQMAAPNSPQWFNTGLQFAYGINGPAQGHFYV 136

Query: 352 MCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTP 406
              T  +  S      PQ  +CF+ +V DDL    GIF      A + K+  G G +++ 
Sbjct: 137 DPETGEIRESEDAYSRPQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGTNYSN 196

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL 465
           +RG G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ 
Sbjct: 197 LRGSGEKLSGGGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEW 255

Query: 466 RKNTGD----------------------------DRRRTHDMNTAN------WIPDLFMK 491
           +    D                            DR+    +NT         +P  ++ 
Sbjct: 256 KAKEEDKVASMVAGSKICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPMSYIL 315

Query: 492 RV-------TQNAGWTLFSPDEVSDLHDLYGK-----------EFEIAYENYERQA--DR 531
           RV            +  +     S+ +   G            EF  A +N E     +R
Sbjct: 316 RVLALVEQGYTTLDFEEYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWVLRER 375

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              K  R + A  LW K++   ++   P + F    N        G +++SN C+E    
Sbjct: 376 TTGKEARAVRARDLWEKIVMSAWKCADPGLQFDSTINEWHTCPKSGRINASNPCSEYMFL 435

Query: 592 SSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               +   CNL S+NL         +    +L         VL+  + +     +   + 
Sbjct: 436 ----DDTACNLASLNLAHFLDEETGKIKITELQHASALWTVVLEISVLMAHFPSKDIARL 491

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           ++  R +GLG       L +L IPY SP A+ IA      ++  A   S ++A+E GA++
Sbjct: 492 SYEFRTLGLGFANLGRVLMVLGIPYDSPRALAIAGGIAAIMTGQAYVTSADMAKELGAFA 551

Query: 710 SFKG-------------------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            ++                    S  +     +   G+ +E   +  +   +   WDE  
Sbjct: 552 RYRENSDDMLRVIRNHSRAARNSSEEEYEGLVVKPRGIDSEYCPK-ELFEAAGKVWDEAL 610

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K+ K  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V++
Sbjct: 611 KKGKKYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHK 670

Query: 810 LKQRDLWDEAMISDLKYH---DGSIGNIERI-PDDLKKIHATAFEIDP-----MWLIESA 860
              R  + +  I +++ +    G++     I    LK    T  +I+        + +  
Sbjct: 671 ALARLGYSDKQIEEIEKYCKGHGTLRGCPGINHQWLKSRGFTDEKIEAVEKQLESVFDIR 730

Query: 861 SRRQKWI-----DQAQSLNLYL-DEPSGKKLDFI 888
               KWI       +        +EPS   L  +
Sbjct: 731 FAFNKWIIGEEFCHSLGFTEEQLNEPSFDMLSEL 764



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA--------FE 850
            +N    + L +    +E + +   Y  G+  I     +  +   +   A          
Sbjct: 752 QLNEPSFDMLSELGATEEDIEAANDYVCGTMMIEGAPHLKPEHLPVFDCASTCGRKGKRY 811

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I+ M  +   S  Q +I  A S  + +    +  ++  +Y  AW   +K     R  S  
Sbjct: 812 INHMAHVRMMSAVQPFISGAISKTVNMPSSATTAEIGDVYEAAWQSMVKAITIYRDGSKL 871

Query: 910 SV 911
           S 
Sbjct: 872 SQ 873


>gi|71403769|ref|XP_804651.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70867734|gb|EAN82800.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 236

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 136/249 (54%), Gaps = 17/249 (6%)

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y+ F GS   QG+   D               R+ R  WD LKKR+   GMRNS  +A
Sbjct: 2   GPYARFAGSPASQGLLHFDLWEQKP---------RSGRWYWDALKKRMMKSGMRNSLLLA 52

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L +R LW+E M + + 
Sbjct: 53  PMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQII 112

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            ++GS+ NI  IP+DLK+++   +EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L
Sbjct: 113 AYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQL 172

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
             ++  AW  GLKT  YYLRS+ A    K T+     K     V + +    S   PS+ 
Sbjct: 173 TSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTLKG---LVKEDDRKQVSSATPSN- 228

Query: 945 TSDTECEVC 953
               +C  C
Sbjct: 229 ---EDCLNC 234


>gi|219556406|ref|ZP_03535482.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis T17]
          Length = 413

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 111/489 (22%), Positives = 183/489 (37%), Gaps = 92/489 (18%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DGTL+ F+  R+E  V  A                                    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRA------------------------------------ 31

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     A+ + + L R +               ++ +      R  E G+ 
Sbjct: 32  AREVACDDPDMPGTVAKAVADALGRGIA-------------PVEDIQDCVEARLGEAGLD 78

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERD-FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                  +       L  A  L   RD        + +L +RY LH   G   E      
Sbjct: 79  DVARVYIIYRQRRAELRTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGELM 138

Query: 322 MRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            R A  +A  E + E     + A  F  LL +  F+ ++PTL NSGT    L+ CF+  +
Sbjct: 139 DRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLPI 198

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A 
Sbjct: 199 EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAAG 258

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +N
Sbjct: 259 VVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVERN 315

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               L +P                               +  ++ A  L+  +       
Sbjct: 316 GLHRLVNPRTGK---------------------------IVARMPAAELFDAICKAAHAG 348

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ + 
Sbjct: 349 GDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPYES----CNLGSINLARMLADGRV 404

Query: 617 DYDKLASTI 625
           D+D+L    
Sbjct: 405 DWDRLEEVA 413



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V          V   + +   +           
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGR----------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A+
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAK 98


>gi|313903475|ref|ZP_07836866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466296|gb|EFR61819.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
          Length = 1272

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 144/346 (41%), Gaps = 49/346 (14%)

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ++ L              VCNLG+INL A     + D + L  T+  AVR LDNVID   
Sbjct: 669 ANGLVAHNCGEQPLGPWGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATE 728

Query: 641 HTIEKAKKSNHTH--RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   + +K    +  R IGLG MG    L  L + Y S +A E+ D+    I   A   S
Sbjct: 729 YFFPENEK-AQRYGVRRIGLGTMGLADMLIKLGVRYGSEKAFEVCDQVYRLIRDEAYRVS 787

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LAQE+G +  F    + QG F                     RLP +++++ +   G+
Sbjct: 788 ALLAQEKGPFPLFDREKYLQGWF-------------------IQRLP-EDIRQLIAQHGI 827

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN   +  APT T + + GVS  I+P +   + +++ +G                     
Sbjct: 828 RNGFLLTQAPTGTTSLLAGVSSGIEPVFAFSFKRTDRTGT-------------------- 867

Query: 819 AMISDLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                + YH+     +E+ PD+ +     +A ++ P   +   +  Q+++D + S  +  
Sbjct: 868 ----HIVYHELYKEWLEKHPDEPVPDYFVSADQLTPEEHVRMQAVIQQYVDASISKTVNA 923

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             E +  ++  +YR A+ +G K   Y R  S   V      G  G+
Sbjct: 924 PREHTVDQVRTLYRLAYELGCKGITYYRDGSREGVLHKLDDGEKGR 969



 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 39/293 (13%)

Query: 300 ILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCST 355
           +  DRY     +G  +E  P+  + RVA  +A  E    +   E  F   L  F F+   
Sbjct: 10  VFLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPDRREVWERRFRQALDGFKFVPGG 69

Query: 356 PTLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT +     +C++   P D   GI   +     +    GG+G + + +R  G +
Sbjct: 70  RILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTY 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D 
Sbjct: 130 VKGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DL 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  + N +  I D FM+ V Q+  W L                             +  
Sbjct: 186 TKITNANLSVCISDAFMEAVQQDLPWDL-----------------------------KWN 216

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C 
Sbjct: 217 GKVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCF 269


>gi|167924463|ref|ZP_02511554.1| hypothetical protein BpseBC_38253 [Burkholderia pseudomallei
           BCC215]
          Length = 613

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 128/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+INL     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAINLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|124381297|ref|YP_001025139.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10229]
 gi|126446010|ref|YP_001079488.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10247]
 gi|126238864|gb|ABO01976.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|261826248|gb|ABN00538.2| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
          Length = 689

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 109 VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 159

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 160 AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 219

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 220 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 279

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 280 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 334

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 335 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 386

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 387 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 443 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 502

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 503 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 543

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 544 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 601

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 602 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 646

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 647 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 689


>gi|119485474|ref|ZP_01619802.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457230|gb|EAW38356.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 164/340 (48%), Gaps = 19/340 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           +  +      +++++  DG+    +  ++  +V  AC GL D +   + +     + DG+
Sbjct: 5   YPTAIPSTKSEIQVIRRDGSRADLDISKIRNVVNWACEGL-DANPITLEAGLTTRLRDGV 63

Query: 194 SESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +  +++  LI  +  L    EP++  V  R  +  L ++ L     + +          Y
Sbjct: 64  TTREIQDNLINCALELCSPSEPDWRYVAGRLHIWSLWKDTLANRGYRYED---------Y 114

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                  ++       +       +L      +  + D  ++Y G  +L  RY L     
Sbjct: 115 ARTVESKVKNHEYDSRILTYN-PEELQQAGTWIDPQWDKDYDYAGAVLLTKRYLLTN--- 170

Query: 313 RIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E+PQ   +  A+ LA+ E  + +   A +FY  ++      +TP L N    +  LSS
Sbjct: 171 --ELPQEALLTCALLLAVVEKPENRLFWARQFYEAIAKRKISLATPILGNLRIPNGSLSS 228

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+T++ D+L  IF A+++ A ++K  GG+G + + VR  G+ + G    S GVIP++K+
Sbjct: 229 CFITSMDDNLESIFDAIKDAARISKNGGGVGTNVSRVRATGSWVMGKENTSGGVIPWIKL 288

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            NDTA+AVNQGG+R GA+   L+ WH+DV EFL+++   G
Sbjct: 289 LNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENG 328



 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 17/81 (20%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
              P     +QVI+R+G     D SKI   +     A EG  A+       +   L +  
Sbjct: 7   TAIPSTKSEIQVIRRDGSRADLDISKIRNVV---NWACEGLDANPITLEAGLTTRLRDGV 63

Query: 80  VTRLLQHNKSALIVHIEDIQD 100
            TR              +IQD
Sbjct: 64  TTR--------------EIQD 70


>gi|71835949|gb|AAZ42350.1| ribonucletotide reductase large subunit [Caenorhabditis remanei]
          Length = 214

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 11/224 (4%)

Query: 590 LNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
             S+ +E AVCNL SI L  +     +FD+ KLA   +   + L+ +ID+N + +E+A+ 
Sbjct: 1   EYSAPDEIAVCNLASIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARN 60

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR IGLG+ G      L+  P+ S +A ++     E I + A+ AS ELA+  G Y
Sbjct: 61  SNMRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPY 120

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S+++GS   +G    D  G+            T +  W  L+K++ T G+RNS  MA  P
Sbjct: 121 STYEGSPVSKGQLQFDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMP 170

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           TA+ A I G ++SI+P   N+Y +  +SGDF +VN  ++ +L +
Sbjct: 171 TASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVE 214


>gi|145591871|ref|YP_001153873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
 gi|145283639|gb|ABP51221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
          Length = 1240

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 199/483 (41%), Gaps = 50/483 (10%)

Query: 484  WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             I  +  KR  +     +F     S    +Y K  E+ YE   +   R        +S  
Sbjct: 726  GIYSVIYKRRRKGG---VFKYVTKSGEERVY-KSSEVYYELVIKNESRCRFMEKIGLSPR 781

Query: 544  ALWRKMLTMLFETGHPW-------ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
                K+     +   P+          K+         +   + +  + +     +    
Sbjct: 782  KS-AKISLKKCKREKPFATVASVEYIGKEVVYDFGVPDYHRYI-AEGIVSHNCAETVQNP 839

Query: 597  TAVCNLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
              VCNL  INL+    +N             D+D LA   R   R LD+ ID +   IE 
Sbjct: 840  FEVCNLTHINLVKFVKDNCGGGSFEEKLGCIDWDGLAQAARVGTRFLDDAIDRSKTGIEV 899

Query: 646  AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              + N   R  GLG+MGF   L  L +PYAS EAVE+ +  M +I  +A+  S ELA+E+
Sbjct: 900  IDEMNAATRKNGLGIMGFAELLIKLGVPYASWEAVELINRIMGWIYVNALDESAELAREK 959

Query: 706  GAYSSFKGSLWDQG--------------------VFPIDSIGLLAEVRDELAMNRTSRLP 745
            G +  F  S++ +G                    V+P +      ++RD     R    P
Sbjct: 960  GPFKFFHKSIYARGEIPVLKFQDHVWSRWERIKRVYPRELQEAGDKLRDITMRTRQWLGP 1019

Query: 746  W-DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            + D+L ++V+  G+RNS  ++IAPT   + + G +  ++P +   ++++   G       
Sbjct: 1020 YLDKLSEKVRG-GVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYE 1078

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
              +  LK R LW    +  +    G + +   +P+D+K + ATA EI  +W +   +  Q
Sbjct: 1079 PGIELLKSRGLWTP-QVRKVVEETGMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQ 1136

Query: 865  KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGK 922
            +W+DQ  S  + +      + + + +  AW +G+K     R +S +  V  + LK    K
Sbjct: 1137 QWVDQGISKTINMPANAPEEDVYWAFAFAWAVGVKGITVYRDKSKSVQVIYTGLKQEIKK 1196

Query: 923  LNA 925
              A
Sbjct: 1197 KLA 1199



 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 189/441 (42%), Gaps = 37/441 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   DG +  F+ ++L++ + +A + +   ++  V  E  K +   +   +L   +  
Sbjct: 1   MSVNKLDGRVEPFSMEKLKISIAKAGADVGVDTNVDVSLEVKKEV---VWSWELADMVQL 57

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
                    P  A V    LL ++ +E     + K +              F   ++ G+
Sbjct: 58  ELLKRAIDRPELALVAQSHLLGRVYKEAFGKDFLKTKVGYGERAAAR----FKSLVDAGL 113

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFM 322
             R   E +  F+        + E D +  Y  L++  +  Y L     R+ E P     
Sbjct: 114 LKREALEFLSKFE-------PRPEFDRSLSYNALRLFTNGNYALRDQNFRLAETPSMAAW 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-- 380
           RVA  +A     + +RA  +Y+ ++    + ++P  FN+ T+    +SCF   V D L  
Sbjct: 167 RVATAVAR----ELERARLYYDYITKLKIVPASPFWFNAWTKKEMFASCFTLEVEDCLSS 222

Query: 381 ------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                 Y I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G I F+++ +  
Sbjct: 223 ITHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMRLFDTN 282

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR-- 492
              + QGGKR+GA    L  WH D+ +F+  +     D     + N + +  D FM++  
Sbjct: 283 VDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKD-AHLQNFNISVFADDTFMEKAL 341

Query: 493 -VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            + QN  + L +P    +       E+       ER+    E  V+ +I+A  L++++  
Sbjct: 342 GIDQNPKYKLINPRAFVEKTGTKPVEYVD-----EREVAIPEEAVWGEINAKELFKEIAH 396

Query: 552 MLFETGHPWITFKDPCNIRSP 572
             +++G P + FK   N  +P
Sbjct: 397 GAWDSGDPGMIFKSNLNASNP 417


>gi|238562332|ref|ZP_00440615.2| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
 gi|254203557|ref|ZP_04909918.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|254205430|ref|ZP_04911783.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|147745796|gb|EDK52875.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|147755016|gb|EDK62080.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|238522855|gb|EEP86297.1| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
          Length = 677

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 97  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 147

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 148 AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 208 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 268 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 322

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 323 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 374

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 375 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 430

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 431 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 490

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 491 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 531

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 532 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 589

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 590 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 634

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 635 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 677


>gi|121597480|ref|YP_990650.1| ribonucleotide reductase-like protein [Burkholderia mallei SAVP1]
 gi|167002214|ref|ZP_02268004.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
 gi|254176553|ref|ZP_04883211.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|121225278|gb|ABM48809.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|160697595|gb|EDP87565.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|243062113|gb|EES44299.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
          Length = 677

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 97  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 147

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 148 AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 208 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 268 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 322

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 323 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 374

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 375 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 430

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 431 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 490

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 491 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 531

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 532 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 589

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 590 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 634

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 635 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 677


>gi|119357579|ref|YP_912223.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354928|gb|ABL65799.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 1148

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 219/581 (37%), Gaps = 91/581 (15%)

Query: 363 TRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G   
Sbjct: 175 YTRPQAHACFIQSVKDDLVNDGGIFDLAVREARVFKFGSGSGTNYSSLRSGGEQLSGGGS 234

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT-- 476
            S  ++ FLK+ +  A A+  G   R+ A    ++  H DV+ F+D +    D       
Sbjct: 235 SSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVDRFIDWKAKEEDKVASLVA 293

Query: 477 ----------------------HDMNTANW----------IPDLFMKRVTQ--NAGWTLF 502
                                    N              +P  ++ RV    + G+T  
Sbjct: 294 GSRICSRFLQAIVNEAVENGSDRKENPGLQQLIKNALGRAVPMSYIVRVLALVDQGYTTL 353

Query: 503 SPDEV-----SDLHDLYGK-----------EFEIAYENYE--RQADRGEIKVFRKISAVA 544
             DE      S+ +   G             F  A EN E     +R   K  + + A  
Sbjct: 354 DFDEYDSNYESEAYQTVGGQNSNNTVRVTNAFMKAVENDEIWLLKERTTGKTAKALKARD 413

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW K+L   ++   P + F    N        G +++SN C+E        +   CNL S
Sbjct: 414 LWEKILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSEYMFL----DDTACNLAS 469

Query: 605 INLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL+        +    +L         VL+  + +     +   + ++  R +GLG   
Sbjct: 470 LNLIHFVDEASGRIKIKELLHASSLWTVVLEISVLMAHFPSKDIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG--------- 713
             + L +L IPY SP+A+ IA      ++  A   S E+A++ G ++ +           
Sbjct: 530 LGTVLMVLGIPYDSPKALAIAGAIGALMTGQAYVTSAEMARDLGTFAGYTANAKDMLRVI 589

Query: 714 ----------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                     S  +     +   G+ +E   +  +   +   WD+  ++ +  G RN+  
Sbjct: 590 RNHRRAAHNMSEEEYEGLSVMPRGIDSEYCPK-DLFEAAGKVWDDALRKGEKHGFRNAQV 648

Query: 764 MAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             IAPT TI  +    +  I+P +  +  K    G +  + +  V++  +R  +  + I 
Sbjct: 649 SVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTISQID 708

Query: 823 DLKYH---DGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           D++ +    G++     I  +   + A  F  + + +IE+ 
Sbjct: 709 DIERYCKGHGTLAGCNAI--NRPWLIARGFRDEHIEMIEAQ 747



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I  M  +   S  Q +I  A S  + +    +  ++  +Y+ AW   +K     R  S  
Sbjct: 837 IKHMAHVRMMSAVQPFISGAISKTVNMPPTATTVEISEVYKSAWQHMVKAITVYRDGSKL 896

Query: 910 SV 911
           S 
Sbjct: 897 SQ 898


>gi|15678679|ref|NP_275794.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621734|gb|AAB85157.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 703

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 154/350 (44%), Gaps = 45/350 (12%)

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +       S     G +   + C E  L +       CNLGS+NL      +  +++KL
Sbjct: 379 VYDATVYGASAFTANGFI--VHNCGEQPLLTHES----CNLGSVNLSLMVGPSGINWEKL 432

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             TI  AV  LDNVID+N + +   ++     R IGLG+MGF   L  L IPY S  A+E
Sbjct: 433 RRTIHVAVHFLDNVIDVNSYPLRPVEEMTLRTRKIGLGVMGFADMLIKLGIPYNSVAALE 492

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A   M FIS  A  AS+ELA+ERG++  FKGS+WD   F                    
Sbjct: 493 VAGRVMSFISSEARRASMELARERGSFPEFKGSIWDIQGFEC------------------ 534

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                           MRN+    IAPT +++ I G S  I+P +   + ++ +   F  
Sbjct: 535 ----------------MRNATLTTIAPTGSLSIIAGTSSGIEPLFAVSFTRNILGRSFHE 578

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           ++        + D      I       GS+  +  +P  ++++  TA EIDP++ ++  +
Sbjct: 579 LHPLFKTMAGRLDKRSLEAIES----RGSLRGVPGVPARIRRLFVTAHEIDPVFHVKMQA 634

Query: 862 RRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             Q+++D A S  + L   S    ++ ++R A  +G K     R  S   
Sbjct: 635 AFQRYVDNAVSKTVNLPADSSPADVERVFRAAHELGCKGVTVYRYGSKVD 684



 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 40/294 (13%)

Query: 297 GLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKET---EKEKRAVE-FYNLLSSFHF 351
            L++L +RY L   G   +E P+  F RVA  +A  +    +    A E FY+++ +  F
Sbjct: 8   ALKVLEERYLLRGEGGEVVETPEEMFRRVARAVASADEAYGDDPAVAEEAFYSVMGNLEF 67

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF +L++ A++ K  GG+G  ++ +R  G
Sbjct: 68  LPNSPTLMNAGTPINQLSACFVLPVEDSIDSIFSSLRDMAIIHKSGGGVGFSFSRLRPRG 127

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+++ +     + QGG+R+GA    L   H D+  F+D +   G 
Sbjct: 128 DIVASTMGVASGPVSFMRIFDVAVDVIKQGGRRRGANMGVLHVSHPDIFSFIDAKSREGP 187

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  +PD FM     +    L +P                           
Sbjct: 188 ----LRNFNLSVAVPDEFM----DDRPVDLINP--------------------------- 212

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              +V   + +  + ++++   + +G P I F+D  N  +P   +G + ++N C
Sbjct: 213 RNGEVVDSVESRVILKRIVEAAWRSGDPGILFEDRINRYNPTPQLGRIEATNPC 266


>gi|254187031|ref|ZP_04893546.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
 gi|157934714|gb|EDO90384.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
          Length = 665

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 85  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 135

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 136 AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 195

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 196 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 255

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 256 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 310

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 311 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 362

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 363 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 418

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 419 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 478

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 479 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 519

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 520 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 577

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 578 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 622

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 623 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 665


>gi|254296584|ref|ZP_04964040.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
 gi|157806542|gb|EDO83712.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
          Length = 613

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRTGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|134281694|ref|ZP_01768401.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
 gi|134246756|gb|EBA46843.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
          Length = 613

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYITSDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|254489336|ref|ZP_05102539.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214041843|gb|EEB82483.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 346

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 153/379 (40%), Gaps = 59/379 (15%)

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLA 609
            F+D     S     G +  SNLC+EI                       CNLGS+N+  
Sbjct: 1   MFEDTV--NSANPINGRIAMSNLCSEILQVNEASTFHDDLGYDHLGTDISCNLGSLNIA- 57

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D     +T+ T++RVL  V +++  +++   ++ N    AIGLG M     L 
Sbjct: 58  ----KTMDGPDFGATVETSIRVLTAVSEMSSINSVPSVRRGNDESHAIGLGQMNLHGYLA 113

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPI---- 723
              I Y S E VE        +++HAI AS  LAQE+   +  F  S +  G F      
Sbjct: 114 RERIHYGSAEGVEFTSVYFAAVTYHAIRASNLLAQEKDETFKDFATSTYASGAFFETYTT 173

Query: 724 -DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D +     V+      +  +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 174 RDWLPESDAVKALFDGKDLPTREDWAKLRDLVMEHGLYNRNLQAVPPTGSISYINNSTSS 233

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I P    + ++                         E  I  + Y          + +D 
Sbjct: 234 IHPIVSKIEIRK------------------------EGKIGRVYYPA------PFMNNDN 263

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTT 900
            + +  A+EI P  +I++ +     +DQ  SL L+   + S + ++     AW  G+KT 
Sbjct: 264 LEFYRDAYEIGPEAIIDTYAAATTHVDQGLSLTLFFPADASTRDINRAQIYAWKKGIKTI 323

Query: 901 YYLRSRSATSVEKSTLKGV 919
           YY+R R  T++E + + G 
Sbjct: 324 YYIRLRQ-TALEGTEVDGC 341


>gi|53715933|ref|YP_106543.1| hypothetical protein BMAA2027 [Burkholderia mallei ATCC 23344]
 gi|52421903|gb|AAU45473.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
          Length = 594

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 14  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 64

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 65  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 124

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 125 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 184

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 185 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 239

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 240 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 291

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 292 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 347

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 348 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 407

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 408 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 448

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 449 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 506

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 507 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 551

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 552 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 594


>gi|254192572|ref|ZP_04899011.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
 gi|169649330|gb|EDS82023.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
          Length = 613

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DHHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|167908267|ref|ZP_02495472.1| hypothetical protein BpseN_38946 [Burkholderia pseudomallei NCTC
           13177]
 gi|254182480|ref|ZP_04889074.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
 gi|184213015|gb|EDU10058.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
          Length = 613

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|167829855|ref|ZP_02461326.1| hypothetical protein Bpseu9_39630 [Burkholderia pseudomallei 9]
 gi|226199237|ref|ZP_03794797.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928644|gb|EEH24671.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 613

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 125/643 (19%), Positives = 220/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY              +D++ +   +   +                ++  G+R
Sbjct: 427 ELAAERGAYPLCDRHA------HLDALRVGPPLPHAVCHA-------------IERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|76818060|ref|YP_336579.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1710b]
 gi|76582533|gb|ABA52007.1| ribonucleoside reductase, intein-containing [Burkholderia
           pseudomallei 1710b]
          Length = 639

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 59  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 109

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 110 AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 169

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 170 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 229

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 230 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 284

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 285 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 336

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 337 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 392

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 393 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 452

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 453 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 493

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 494 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 551

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 552 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 596

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 597 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 639


>gi|325066266|ref|ZP_08124939.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces
           oris K20]
          Length = 306

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 47/336 (13%)

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTH 653
            +   CNLGS+N+         D    A TIRTAVR L  V D      +    + NH  
Sbjct: 2   GKDISCNLGSLNIA-----KTMDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHES 56

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L    I Y S E ++  +     + F A++AS E+A ER  ++  F+
Sbjct: 57  HAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFVGFE 116

Query: 713 GSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G F    +          + E+    +++  +R  W  L +RVK  G+ N N  
Sbjct: 117 DSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAALAERVKKGGLYNRNLQ 176

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PT +I+ I   + SI P    + ++                         E  I  +
Sbjct: 177 AVPPTGSISYINNSTSSIHPIVAKVEIRK------------------------EGKIGRV 212

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGK 883
            Y          + +D  + +  A+EI P  +I++ +   + +DQ  SL L+  D  + +
Sbjct: 213 YYPA------PFMTNDNLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTR 266

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++     AW  G+KT YY+R R A  +  + ++G 
Sbjct: 267 DVNRAQIYAWRKGIKTLYYIRLRQAA-LTGTEVEGC 301


>gi|217424388|ref|ZP_03455887.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
 gi|217392853|gb|EEC32876.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
          Length = 594

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 218/643 (33%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 14  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 64

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 65  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 124

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 125 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 184

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL          D  G     A     
Sbjct: 185 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPR---DAPGGALPGADGA-- 239

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 240 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 291

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 292 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 347

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 348 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 407

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 408 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 448

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 449 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 506

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 507 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 551

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 552 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 594


>gi|168704293|ref|ZP_02736570.1| ribonucleotide-diphosphate reductase subunit alpha [Gemmata
           obscuriglobus UQM 2246]
          Length = 1246

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 115/599 (19%), Positives = 206/599 (34%), Gaps = 102/599 (17%)

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
              S    P   +CF+  V DDL    GI       A + KY  G G++++ +RG G  +
Sbjct: 179 RSTSAYERPAPHACFIQEVADDLVNEGGIMDLWVREARIFKYGSGTGSNFSSLRGEGEPL 238

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
               GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+EEF++ +       
Sbjct: 239 S-GGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVLDLDHPDIEEFVNWKVTEEQKV 297

Query: 474 ---------------------------------------RRTHDMNTANWIPDLFMKRVT 494
                                                  R+      A  +P+ ++ RV 
Sbjct: 298 ADLVTGSRLLNKHLNAIMRALHGHAVAEERYDPTKNAALRKAVLEARAALLPENYIARVL 357

Query: 495 Q--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN-----------Y 525
           Q              +  W   +   VS  +         EF  A EN            
Sbjct: 358 QLARQGWKSIEIDEYDTDWNSKAYYTVSGQNSNNSVRIPNEFMRAVENNGPWQLFWRTEL 417

Query: 526 ERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           E+    G     +K + A  LW ++    +    P + F    N        G + +SN 
Sbjct: 418 EKAKKEGRAPKAKKTLPARELWDQISYAAWSCADPGVQFHTTINEWHTCPLDGEIRASNP 477

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E        +   CNL S+NL   F     +FD +     +R    +L+  + +    
Sbjct: 478 CSEYLFL----DDTACNLASLNLTTFFDTKAGKFDIEAYRHAVRIWTMILEVSVYMAQFP 533

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +   + ++  R +GLG     + L +  I Y S E           +   A +AS E+A
Sbjct: 534 SQSVAQKSYDFRTLGLGYANLGALLMVQGISYDSAEGRAQCGALTAIMHAGAYAASAEMA 593

Query: 703 QERGAYSSFKGSL-------------------WDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            E G ++ +  +                     +     +  +G+ A       +   +R
Sbjct: 594 AEVGPFARYAANRDHMLRVVRNHRRAAYNAAPAEYEGLSVYPVGIDARYCPP-DLLAAAR 652

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV- 801
              D + +  +  G RN+    +APT TI  +    +  I+P +  +  K    G +   
Sbjct: 653 RESDRMLELGERHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 712

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +N  +   L +    +  +   ++Y  G+         +   + A  F  + +  IE+ 
Sbjct: 713 INQSVPPALAKLGYANWQIEDIVRYSRGAATLHGCPHINPAVLKAKGFTDELLKKIEAQ 771



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 12/164 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           +VK+ +      + +   + L         +     Y  G+  I     +  +   +   
Sbjct: 791 FVKNVLKVPAEALAAPTFDLLTHLGFSKTQVAEANGYVCGTMTIEGAPHLKPEHYAVFDC 850

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           A +        +     I   +  Q +I  A S  + +  + + + +   Y  +W +  K
Sbjct: 851 ANKCGKTGKRYLSWESHIRMMAAAQPYISGAISKTINMPYDATVEDVKKAYLLSWQLMTK 910

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                R  S  S   +++           VT P +       P 
Sbjct: 911 ANALYRDGSKLSQPLNSVADSPEAALLASVT-PEAEKAEAKAPQ 953


>gi|237509351|ref|ZP_04522066.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001556|gb|EEP50980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 613

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 218/643 (33%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL          D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPR---DAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DHHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|53723300|ref|YP_112285.1| hypothetical protein BPSS2282 [Burkholderia pseudomallei K96243]
 gi|254265005|ref|ZP_04955870.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
 gi|52213714|emb|CAH39768.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|254216007|gb|EET05392.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
          Length = 613

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL      +   D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH---TAPPRDAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|126455505|ref|YP_001077113.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1106a]
 gi|167851317|ref|ZP_02476825.1| hypothetical protein BpseB_39126 [Burkholderia pseudomallei B7210]
 gi|242311117|ref|ZP_04810134.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
 gi|126229273|gb|ABN92686.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106a]
 gi|242134356|gb|EES20759.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
          Length = 613

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 218/643 (33%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S GV   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL          D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPR---DAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|258591934|emb|CBE68239.1| Ribonucleoside-diphosphate reductase [NC10 bacterium 'Dutch
            sediment']
          Length = 1196

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 151/390 (38%), Gaps = 57/390 (14%)

Query: 574  QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLAST 624
              +    ++ L               CNLGSINL   +            + D+  L   
Sbjct: 667  PGIHAFDANGLYAHNCGEQPLGPNDACNLGSINLARFYLPSIPADARVTERIDWVGLEQV 726

Query: 625  IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +RTAVR LD+VID+N + ++   +    +R IGLG+MG+   L  L +PY S EAV + +
Sbjct: 727  VRTAVRFLDDVIDVNPYPLQDITEEVRNNRRIGLGVMGWADLLLELGVPYDSDEAVTLGN 786

Query: 685  ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E M FI      AS +LA+ RG +  +  S++  G                         
Sbjct: 787  EIMGFIRRIGHDASEKLAEARGPFPRWSRSIYKGGK------------------------ 822

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                         +RNS    IAPT TI+ I G S  I+P +   +         T VN 
Sbjct: 823  ------------PIRNSTVTTIAPTGTISIIVGCSSGIEPIFAVAFSHIVGDRHLTFVNP 870

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                  K+R  + E ++  +    G++  +E +P+D++++  TA EI+P   ++  +  Q
Sbjct: 871  IFEEVAKRRGFYSEELMRRV-AERGTVRGLEGVPEDVQRVFVTAHEIEPARHVKMQAAFQ 929

Query: 865  KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRS----------RSATSVEK 913
            K  D   S  +   +  + + +   Y  A+ +G       R            +      
Sbjct: 930  KQTDNGVSKTINLPNSATPEDIAKAYMMAYELGCLGITVFRDGCKGTQVLHLGTGAKPAL 989

Query: 914  STLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            S ++     L   P       +   G P +
Sbjct: 990  SNVEEPAPSLAEEPAVGDAEVSARQGAPQA 1019



 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 138/310 (44%), Gaps = 42/310 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA-------LKETEKEKR 338
           +  ++  +    +++L +RY +       E P+    RVA+ +A         E E  + 
Sbjct: 26  RPTKNGQWSESAIRVLKERYLIRDATGVKETPEEMCWRVAVAIAKAEGQWGRSEAEALQV 85

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A  FY+++    F+ ++PT+ N+G  +  Q S+CF+  V D + GIF A++  A++ +  
Sbjct: 86  AESFYDVMVDGKFLPNSPTMMNAGKENGMQYSACFVLPVEDSMEGIFEAVKRAAIIHQSG 145

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG G  ++ +R     +  T GK+ G I FL+V N    AV QGG R+GA    L+  H 
Sbjct: 146 GGTGFAFSRLRPKDTLVKSTGGKASGPISFLRVFNAATEAVKQGGARRGANMGILKVDHP 205

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ EF+D + + G       + N +    D FM  + ++  + L  P             
Sbjct: 206 DILEFIDCKLDGG-----ITNFNISVATTDTFMDALAKDETYELIDPHT----------- 249

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI--RSPQQH 575
                             V R + A  ++++M+   + TG P + F D  N    +P   
Sbjct: 250 ----------------KLVTRHLPAREVFQRMVQAAWRTGDPGMIFIDRINASPSNPIPQ 293

Query: 576 VGVVHSSNLC 585
             ++ ++N C
Sbjct: 294 DELIEATNPC 303


>gi|193212265|ref|YP_001998218.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobaculum
           parvum NCIB 8327]
 gi|193085742|gb|ACF11018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobaculum parvum NCIB 8327]
          Length = 1152

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/573 (21%), Positives = 214/573 (37%), Gaps = 88/573 (15%)

Query: 348 SFHFMCSTPTLFNS--GTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGN 402
            F+    T     S      PQ  +CF+ +V DDL    GIF      A + K+  G G 
Sbjct: 158 HFYVDPETGETRESEDAYSRPQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGT 217

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG G  + G    S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+
Sbjct: 218 NYSNLRGSGEKLSGGGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEK 276

Query: 462 FLDLRKNTGD----------------------------DRRRTHDMNTAN------WIPD 487
           F++ +    D                            DR+    +NT         +P 
Sbjct: 277 FIEWKAKEEDKVASMVAGSKICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPM 336

Query: 488 LFMKRV-------TQNAGWTLFSPDEVSDLHDLYGK-----------EFEIAYENYERQA 529
            ++ RV            +  +     S+ +   G            EF  A +N E   
Sbjct: 337 SYILRVLALVEQGYTTLDFEEYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWV 396

Query: 530 --DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +R   K  R + A  LW K++   ++   P + F    N        G +++SN C+E
Sbjct: 397 LRERTTGKDARAVRAKDLWEKIVMSAWKCADPGLQFDSTINEWHTCPVSGRINASNPCSE 456

Query: 588 ITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                   +   CNL S+NL         +    +L         VL+  + +     E 
Sbjct: 457 YMFL----DDTACNLASLNLAHFLDEESGKIKITELQHASALWTVVLEISVLMAHFPSED 512

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + ++  R +GLG       L +L IPY SP A+ IA      ++  A   S +LA++ 
Sbjct: 513 IARLSYEFRTLGLGFANLGRILMVLGIPYDSPRALAIAGGIAALMTGQAYVTSADLAKDH 572

Query: 706 GAYSSFKGS-------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           GA++ ++ +                     +     +   G+ +E   +       ++ W
Sbjct: 573 GAFARYRENSNEMLRVIRNHRRAAHNSAEEEYEGLVVKPRGIDSEYCPKELFTAAGKV-W 631

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DE  KR K  G RN+    IAPT TI  +    +  I+P +  +  K    G +  + + 
Sbjct: 632 DEALKRGKKYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQ 691

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            V++   R  + +  I +++ +    G +   P
Sbjct: 692 SVHKALARLGYSDTQIEEIEKYCKGHGTLRGCP 724



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA--------FE 850
            +N    + L +    DE + +   Y  G+  I     +  +   +   A          
Sbjct: 777 QLNDPGFDMLSELGASDEDIEAANDYVCGTMMIEGAPHLKAEHLPVFDCASTCGRKGERY 836

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I+ M  +   S  Q +I  A S  + +    +  ++  +Y  AW   +K     R  S  
Sbjct: 837 INHMAHVHMMSAVQPFISGAISKTVNMPASATTAEIGDVYEAAWQSMVKAITIYRDGSKL 896

Query: 910 SV 911
           S 
Sbjct: 897 SQ 898


>gi|126444513|ref|YP_001064201.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           668]
 gi|126224004|gb|ABN87509.1| ribonucleotide reductase system [Burkholderia pseudomallei 668]
          Length = 613

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 126/643 (19%), Positives = 217/643 (33%), Gaps = 85/643 (13%)

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-------RAVEFYNLLSSFHFM 352
           +  DRY L    SR +         A     +     +        A  FY  L +  F 
Sbjct: 33  VFADRYALPGEHSRAQ---------ACARVARALALAEPMATRSGAARRFYRNLLNGAFG 83

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAMLAKYSGGLGNDWTP 406
                          ++SCF+  +  P  L         AL E  +       +G D++ 
Sbjct: 84  AGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSA 143

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +   GA     +  S  V   L   +       +   R+ A  A L   H D+  F   +
Sbjct: 144 IPPAGARPDADHPDSPDVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAK 203

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                   R   +  A    D FM+ V Q+  WTL          D  G     A     
Sbjct: 204 HRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPR---DAPGGALPGADGA-- 258

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +  + A  +WR++++   +   P + F D  +   P +    + +++ C 
Sbjct: 259 --------WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCG 310

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDIN 639
              L           LG+I+L     N        +FD+    + +R  VR+LDN +D+ 
Sbjct: 311 AQPLPPYGSAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVT 366

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +    + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS 
Sbjct: 367 RWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASA 426

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERGAY               D    L  +R    +          +   ++  G+R
Sbjct: 427 ELAAERGAYPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLR 467

Query: 760 NSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +S+  + AP   ++   G   S  I+P+   +  +   +G        +  E     L+ 
Sbjct: 468 HSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFR 525

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                  L    AT  ++ P   +      Q ++D      L  
Sbjct: 526 SLRGERAA---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTL 570

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  S ++++ +   AW   LK+    R+  A   + S   GV
Sbjct: 571 ANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 613


>gi|15451586|gb|AAK98710.1|AC069158_22 Putative ribonucleotide reductase [Oryza sativa Japonica Group]
          Length = 236

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           +A   ++R  W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 16  IAGALSARWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVL 75

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +EI    
Sbjct: 76  SGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKT 135

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A    K 
Sbjct: 136 IVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKF 195

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K       + +  +    +  S  +  EC  C
Sbjct: 196 TVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 234


>gi|260892347|ref|YP_003238444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
 gi|260864488|gb|ACX51594.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
          Length = 955

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 42/341 (12%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
             V    ++ L               CNLGSINLL       F ++KL   +  AVR LD
Sbjct: 634 PAVHAFVANGLVVHNCGEQPLLPYESCNLGSINLLNMVDGAGFSWEKLREVVHLAVRFLD 693

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           +VI++N   +     +    R +GLG+MG+  AL  L IPY S  A+ +  E M FI   
Sbjct: 694 DVIEVNNFPVPAIAAATRRTRKVGLGVMGWADALFKLGIPYDSEAALGLGAEVMRFIREE 753

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A +AS +LA+ERG + +++ S++                           LP        
Sbjct: 754 ARAASRQLAEERGTFPAWEDSVY------------------------YPHLP-------- 781

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
               +RN+    IAPT +I+ I GVS  I+P +   Y +  + G   +V   +  E  ++
Sbjct: 782 ----LRNATLTTIAPTGSISAIAGVSPGIEPVFALAYTRMVLDGKKLLVVDKVFQEYVEQ 837

Query: 814 DLWDEAMISDLK--YHDGSIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +         +      G++G       +P+D++++  TA EI P W +   +  Q++ D
Sbjct: 838 NFPPSRREEIMAGVSRTGNLGLCAEELDLPEDMRRLFKTALEIAPEWHLRHQATFQQYTD 897

Query: 869 QAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSA 908
            A S  + L   S  +++  I+ +A+ + +K     R+ S 
Sbjct: 898 NAVSKTINLPSDSSPEEVGQIFWKAFELKVKGLTVYRTGSR 938



 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 133/314 (42%), Gaps = 43/314 (13%)

Query: 300 ILYDRYFLHIN-GSRIEMPQAFFMRVAMG-------LALKETEKEKRAVEFYNLLSSFHF 351
           IL  RY      G+ +E P+  F RVA               E E+ A  F+ L++S  F
Sbjct: 27  ILEGRYLKRDEAGNVVETPEEMFWRVARAVAEAEARFGASAQEVEEWARRFFELMASLDF 86

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+G    QL++CF+  + D +  IF  L+  A++ K  GG G D++ +R  G
Sbjct: 87  LPNSPTLINAGRELGQLAACFVLPIEDSIESIFETLKYAALIHKSGGGTGFDFSRLRPKG 146

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
             +  T G + G + F+++ N     + QGG R+GA    L   H D+ EF+  ++  G 
Sbjct: 147 DPVRSTGGVASGPVSFMRIFNAATEEIKQGGVRRGANMGILRADHPDIMEFVACKEEEG- 205

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + D F + + ++  W L                              
Sbjct: 206 ---AFRNFNISVAVTDAFFETLARSGEWELVF---------------------------- 234

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC--TEIT 589
              KV+R++ A  L+  ++      G P + F D  N  +P   +G + ++N C   +  
Sbjct: 235 -RGKVYRRLPARELFDWIVQHAHANGEPGLLFLDAINRANPTPALGRIEATNPCVTGDTL 293

Query: 590 LNSSSEETAVCNLG 603
           + +      V  L 
Sbjct: 294 VYTDQGLVRVKELA 307


>gi|229057077|ref|ZP_04196469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720218|gb|EEL71797.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 364

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 167/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ +K T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARKNTVHFNSV--AERMEYMKEHDYYYNVLDEYSLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    IP  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIIPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|198434254|ref|XP_002126546.1| PREDICTED: similar to Ribonucleotide reductase M1 [Ciona
           intestinalis]
          Length = 263

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 127/245 (51%), Gaps = 14/245 (5%)

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
              +   +   D   +            T    W++LK+R+   G+RNS  +A  PTA+ 
Sbjct: 27  NMDFVDPILQFDMWNVTP----------TDLWDWNKLKQRIAKYGIRNSLLIAPMPTAST 76

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L + +LW+E +   +  ++GSI 
Sbjct: 77  AQILGNNESIEPYTSNIYTRRVLSGEFQIVNQHLLKDLTEMNLWNEDVKLQMIANNGSIQ 136

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   
Sbjct: 137 NIPNIPDDLKQLYRTVWEISQKNIVKMAADRAAFIDQSQSLNIHIAEPNYAKLTSMHFFG 196

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTL---KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           W  GLKT  YYLR++ A    + T+   K  D K             +   +  S  +  
Sbjct: 197 WKSGLKTGMYYLRTKPAAQAIQFTVDKNKLKDVKSEQTMTEQEKREENEAAMLCSLQNKE 256

Query: 949 ECEVC 953
            C +C
Sbjct: 257 ACLMC 261


>gi|229172090|ref|ZP_04299655.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611433|gb|EEK68690.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 364

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 169/367 (46%), Gaps = 15/367 (4%)

Query: 226 EKLRR--EVLTTVYKKPQKAT-HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            +L +  E L    ++ ++ T H        EY   Y  +     L   S+ + + VY  
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSVAERMEYMKEY--DYYYNVLDEYSLEEVEEVY-- 61

Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339
            ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A
Sbjct: 62  -NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---A 117

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  G
Sbjct: 118 KHFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGG 177

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D
Sbjct: 178 GVALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWD 237

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + 
Sbjct: 238 IIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDI 297

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G 
Sbjct: 298 DIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGT 357

Query: 579 VHSSNLC 585
           V  SNLC
Sbjct: 358 VKMSNLC 364


>gi|229029123|ref|ZP_04185220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732181|gb|EEL83066.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 364

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 166/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 HFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|47566240|ref|ZP_00237268.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217958928|ref|YP_002337476.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228984527|ref|ZP_04144704.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155018|ref|ZP_04283132.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195648|ref|ZP_04322414.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|47556793|gb|EAL15124.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217063500|gb|ACJ77750.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228587897|gb|EEK45949.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628576|gb|EEK85289.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775230|gb|EEM23619.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 364

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|52143986|ref|YP_082841.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|51977455|gb|AAU19005.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|324325468|gb|ADY20728.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 376

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 251 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 310

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 311 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 370

Query: 580 HSSNLC 585
             SNLC
Sbjct: 371 KMSNLC 376


>gi|229160403|ref|ZP_04288401.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623127|gb|EEK79955.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 364

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 166/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|229095935|ref|ZP_04226911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102051|ref|ZP_04232763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|229114889|ref|ZP_04244302.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668581|gb|EEL24010.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228681371|gb|EEL35536.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687445|gb|EEL41347.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 364

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 166/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|229016700|ref|ZP_04173633.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
 gi|229022912|ref|ZP_04179432.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228738447|gb|EEL88923.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228744608|gb|EEL94677.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
          Length = 364

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 165/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AN 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 HFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|229084442|ref|ZP_04216721.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698870|gb|EEL51576.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 364

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 13/366 (3%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ +  T H       E      E+     +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARANTVHF--DSVAERIEYMNEQDYYYNVLDEYKLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NVAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVSIVSLYLGRGDVNK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +
Sbjct: 239 IEFLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDID 298

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V
Sbjct: 299 IDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANKQHPLKGIGTV 358

Query: 580 HSSNLC 585
             SNLC
Sbjct: 359 KMSNLC 364


>gi|85704837|ref|ZP_01035938.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
 gi|85670655|gb|EAQ25515.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
          Length = 1131

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 137/355 (38%), Gaps = 45/355 (12%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
             V    ++                 C LGSINL            + D   L   +R A
Sbjct: 623 PGVNAFDANGFYVHNCGEQPLPPYGACLLGSINLARLVTEPFATGARVDAAALDDLVRVA 682

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR++DNV+D++   +          R IGLG+ G   AL ++ + Y S EAV+  +  + 
Sbjct: 683 VRMMDNVVDVSGFPLPAQAAEAQAKRRIGLGVTGLADALLMVGLRYGSDEAVQQTEAWLH 742

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I+  A  ASV+LA+E+GA+  F                     RD    + T +   ++
Sbjct: 743 AIARAAYLASVDLAREKGAFPLFD--------------------RDAYLASGTMQAMDED 782

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           ++  V   G+RN+   +IAPT TI+   G  S  I+P +   Y +  +  D +     +V
Sbjct: 783 VRAAVAAHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVV 842

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           +   Q  +W + M                    L      A  + P   ++  +  QKW+
Sbjct: 843 DYAVQ--MWRDRMGD----------------APLPSYFVNAQTLPPEDHVKMQAAAQKWV 884

Query: 868 DQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           D + S  +   E  S +    +Y QAW +G K     R    T    S  +  D 
Sbjct: 885 DSSISKTINCPEDISFEAFKNVYLQAWDLGCKGCTTYRPNDVTGSVLSVSETSDK 939



 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 126/302 (41%), Gaps = 35/302 (11%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QI   +Y            +  + R+A  LA+ E E E     F++ L  F F+ +    
Sbjct: 11  QIWNMKYRFKTEDGGDASVEDSWRRIARALAVLEAEPEVWEDRFFHALEDFKFLPAGRIT 70

Query: 359 FNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +GT     L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G
Sbjct: 71  AGAGTARKVTLFNCFVMGTVPDDMGGIFDNLREAALTMQQGGGIGYDFSTIRPKGAEVKG 130

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R 
Sbjct: 131 VSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARL 186

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  I D FM+ V  +  W L           ++G                    V
Sbjct: 187 RMFNLSVLITDAFMEAVKADGPWDL-----------VFGGR------------------V 217

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  LW +++   ++   P + F D  N  +   +   + ++N C        ++E
Sbjct: 218 YHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLSYCETIAATNPCVTAETWVMTDE 277

Query: 597 TA 598
            A
Sbjct: 278 GA 279


>gi|320451209|ref|YP_004203305.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
 gi|320151378|gb|ADW22756.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
          Length = 1388

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 138/327 (42%), Gaps = 50/327 (15%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            C+LG++NL A+  + +F  ++    + TA+R LDNV+D+N   +   +++    R +GLG
Sbjct: 862  CDLGALNLAAYVKDGEFQMEEFRRDVHTAIRFLDNVLDVNRFALPDNEEAAKKLRRLGLG 921

Query: 660  LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            +MG   AL  + +PY+S EA E   E M  +   AI AS  LA+ERG +  ++       
Sbjct: 922  VMGLADALIKMGLPYSSEEAREKVYEIMSAMREEAIKASEALAKERGVFPLYEA------ 975

Query: 720  VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                       E  + L +                    RN   + +APT T + + GVS
Sbjct: 976  ---------HQEYFEALGIRP-----------------RRNVALLTVAPTGTTSMVMGVS 1009

Query: 780  QSIDPSYQNLYVKSNMSGDFTVVNSFLVN---------ELKQRDLWDEAMISDLKYHD-- 828
              I+P +     +        +++   V          + ++   WD   I      D  
Sbjct: 1010 SGIEPVFSPFVWRRIGGEYKPLLHPLFVELMETYPPHPDYEKDGKWDWEKIIAAIQEDGH 1069

Query: 829  GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSLNLY-LDEPS 881
            GS+ N+  +P+ ++++   A +I P+  +      Q+  D       + S  +   +  +
Sbjct: 1070 GSVKNLPFVPEAIRRVFECAHDIHPLDHVRMQGAVQRAFDAEGYAANSLSKTINLPNHAT 1129

Query: 882  GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             ++++  Y +A+  G K     R  S 
Sbjct: 1130 PEEVEEAYLEAYRTGCKGITVYRDGSR 1156



 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 38/260 (14%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           G    Q        VPDD+ GI  A +  A LA        D++ +R  GA I G+ G S
Sbjct: 192 GVLVVQEPPPGAIQVPDDMGGIVEAAKAAAALALKGLEPHVDFSLLRPEGAPIRGSGGTS 251

Query: 422 QGVIPF-LKVAND------------------------TAVAVNQGGKRKGAVCAYLETWH 456
            G + F +++ ++                            V QGG R+GA  A L   H
Sbjct: 252 SGPVSFLMEIFDNFLEWAALGGEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIEH 311

Query: 457 IDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
            D+ +FL  +    +         N +  + + FMK + ++A +++  P EV   +  Y 
Sbjct: 312 PDLLDFLTAKDLDREKAEGDISTFNISVLVTEAFMKALEEDALFSVT-PIEVPGKY--YP 368

Query: 516 KEFEIAYEN-----YERQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                 Y        ER+     + +F  K+ A  LW ++    + TG P + F D  N 
Sbjct: 369 HPLGSTYTGQIPALPEREDGAKPVPLFGGKVPARWLWHEIAWHAWATGEPGLIFVDRINE 428

Query: 570 RSPQQHVGV---VHSSNLCT 586
            S  + +G    + S+N C 
Sbjct: 429 LSALKGLGPRYQIRSTNPCF 448



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 45/209 (21%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNL 345
           ER F F+     I   +YF   +G  +      F RVA  +A  E  +++     +FY+L
Sbjct: 2   ERYF-FDEHAQAIARRQYFQEGDGDIL----GMFRRVAREIAKVEKPEDRVYWEEKFYDL 56

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTT----VPDDLYGIFGALQENAMLAKYSGGLG 401
           ++S  F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 57  MASKRFSPGGRILAGAGTPHGNLLNCFVQGATQYPPESFNGIMEVAKKLALVTKVGGGNG 116

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                                R  A   YL   H DV +
Sbjct: 117 VNLDPYRSKGNRQRQ-------------------------AVRGVA---YLSARHPDVAD 148

Query: 462 FL------DLRKNTGDDRRRTHDMNTANW 484
           F+              +     +   A +
Sbjct: 149 FIRGLMRPPTNPEGEKEEIALKNFVRAVY 177


>gi|222095084|ref|YP_002529144.1| ribonucleoside-diphosphate reductase, alpha subunit, n-terminal
           region [Bacillus cereus Q1]
 gi|221239142|gb|ACM11852.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus Q1]
          Length = 346

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 9/337 (2%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHING 311
            E      E      +L E  ++   V    ++ Y  +F F+ Y+     Y  Y L  N 
Sbjct: 15  AERMEYMKEHDYYYNVLDEYNLEE--VEEVYNIAYGENFEFQSYMAASKFYKDYALKTND 72

Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
            +  +E  +     V++ L   +  K   A +F +++   ++  +TPT  N+G  R  ++
Sbjct: 73  QKQYLESYEDRVAIVSLYLGRGDVAK---AKQFASMIVKQNYQPATPTFLNAGRSRRGEM 129

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D L  I   +     L+K  GG+  + + +R  G  I G +  + GV+P +
Sbjct: 130 VSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAASGVVPVM 189

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  
Sbjct: 190 KLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSK 249

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F +   +N  + +F+P  V   +  +  + +I     E  ++    K    ISA  +  K
Sbjct: 250 FFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIK 309

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +  +  E+G+P++ FK   N + P + +G V  SNLC
Sbjct: 310 IAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNLC 346


>gi|239997054|ref|ZP_04717578.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 268

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 22/281 (7%)

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQ 574
           ++FE  Y  YE      +    ++I A+ L+   +     TG  ++   D CN  S    
Sbjct: 1   EKFEELYVKYENDDSIRK----KQIKAMELFSLFMQERASTGRIYLQNVDHCNTHSPFNP 56

Query: 575 HVGVVHSSNLCTEI--------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            V  V  SNLC EI         +N  + E A+C L + NL A  +      D+      
Sbjct: 57  EVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAFNLGAIKS-----LDEFEELSD 111

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR LDN++D   + +  A  +    R +G+G++ F   L    + Y+   A  +   +
Sbjct: 112 LAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKNGVKYSDHSANGLVHRT 171

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E + ++ + AS  LA+E+GA   F  + + QG+ PIDS         +   N      W
Sbjct: 172 FEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDL----DSVCNEPLHYDW 227

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           D L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 228 DALREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 268


>gi|254496937|ref|ZP_05109776.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
 gi|254353846|gb|EET12542.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
          Length = 188

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 154/198 (77%), Gaps = 11/198 (5%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK  +LWD
Sbjct: 1   MRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLVADLKALNLWD 60

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M++DLKY +GS+  I RIP +LK+ +AT+FEIDP+WL+++ASRRQKWIDQAQSLN+Y+
Sbjct: 61  EVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQKWIDQAQSLNIYM 120

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +PSGKKLD +Y  AW  GLKTTYYLRS  AT+ EKST+   DG LNAV +         
Sbjct: 121 AQPSGKKLDQLYMHAWTRGLKTTYYLRSLGATNAEKSTI--TDGALNAVKIISDE----- 173

Query: 938 LGIPSSCTS-DTECEVCQ 954
              P  C+  D +CE CQ
Sbjct: 174 ---PKVCSILDPDCEACQ 188


>gi|46200232|ref|YP_005899.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
 gi|46197860|gb|AAS82272.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
          Length = 1800

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 60/381 (15%)

Query: 583  NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            + C EI L         C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   
Sbjct: 1291 HNCGEIPLTVGEP----CDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFA 1346

Query: 643  IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +   + +  + R +GLGLMG   AL  + +PY S EA     E +  +   AI AS  LA
Sbjct: 1347 LPDNEMAAKSLRRLGLGLMGLADALIKMGLPYDSEEARRKVYEIVSVMREEAIRASEALA 1406

Query: 703  QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR--- 759
            +ERG +  ++                                   E ++  +++G+R   
Sbjct: 1407 EERGPFPLYE-----------------------------------EHREYFQSLGIRPRR 1431

Query: 760  NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR------ 813
            N   + +APT T + + GVS  I+P +     +        +++   V  ++        
Sbjct: 1432 NVALLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPPAPGY 1491

Query: 814  ---DLWDEA-MISDL-KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                 WD   +I ++ K   GS+ N+  +P+ ++K+   A ++ P+  +      Q+  D
Sbjct: 1492 AKDGKWDWEKIIEEIQKDGHGSVQNLPFVPEAIRKVFLCAHDVHPLDHVRMQGAVQRAFD 1551

Query: 869  ------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
                   + S  +   +  + + ++  Y +A+  G K     R  S      +  K    
Sbjct: 1552 AEGYAANSISKTINLPNHAAVEDVEAAYTEAYRTGCKGITVYRDGSREFQVLTVKKEAKE 1611

Query: 922  KLNAVPVTDPNSSTHSLGIPS 942
            +       +          P 
Sbjct: 1612 EKAGKTPEEAKPQEARAHEPG 1632



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV-----ANDTAVAVNQGGKRK 445
           AM+ + +  LG +  P      ++   + +  G I  L +         A  +     R+
Sbjct: 680 AMVLEKAQDLGLEAEPFPFNEYYVRVASVEPGGEILTLDLSVEGNHTYLANGLVSHNTRR 739

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           GA  A L   H D+ +FL  +    +         N +    D F++ V ++  W +  P
Sbjct: 740 GAGMATLSIEHPDLLDFLTAKDLDREKAEGDISTFNISVLATDRFLEAVEKDELWPVT-P 798

Query: 505 DEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPW 560
            EV   +  Y   G          ER+     I ++  K+ A  LW ++    + TG P 
Sbjct: 799 IEVPGKYYPYPVEGPYTGKLPSLPEREDGAKAIPLYGGKVPARWLWHEIAWHAWATGEPG 858

Query: 561 ITFKDPCNIRSPQQHVG---VVHSSNLCT 586
           + F D  N  S  + +G    + S+N C 
Sbjct: 859 LIFVDRVNALSALKGLGERYQIRSTNPCF 887



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 45/209 (21%)

Query: 289 RD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           RD + F+     I   +Y    +G  +      F RVA  +A  E E+E+   E  F+ L
Sbjct: 2   RDGYFFDEHAQAIARRQYLQPGDGDIL----GMFRRVAREIAKAEREEERSKWEEEFFRL 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++   F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 58  MAEKRFSPGGRILAGAGTVHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 117

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                               +R     AYL   H DVE+
Sbjct: 118 VNLDPYRSKGK----------------------------RARRAVEGVAYLSAEHPDVED 149

Query: 462 FL------DLRKNTGDDRRRTHDMNTANW 484
           F+       +  +   +     +     +
Sbjct: 150 FIRGLMRPPINPDGAKEEISLKNFARVVY 178



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A +E   +  A   Y  LS      +       G R  +        VPDD+ GI  A +
Sbjct: 164 AKEEISLKNFARVVYGALSPELKALAERY----GVRTVKEPPEGRILVPDDMGGIIDAAR 219

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVAND 433
           E A LA+       D++ +R  GA I G+ G S G + FL ++ ++
Sbjct: 220 EAADLARKGQKPHVDFSLLRPEGAPIRGSGGTSSGPVSFLFEIFDN 265


>gi|330859934|emb|CBX70264.1| hypothetical protein YEW_LG48160 [Yersinia enterocolitica W22703]
          Length = 367

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 147/357 (41%), Gaps = 26/357 (7%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR              +        H +Q
Sbjct: 12  SSSELDYHSLNAMLNLYDADGRIQFDKDRLAARQ---------YFLQHVNQNTVFFHNLQ 62

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
               E     +EEG   + + E   DF  +       Y + F F  +LG    Y  Y L 
Sbjct: 63  ----EKLDYLVEEGYYEKEVLEK-YDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLK 117

Query: 309 I-NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
             +G R  E  +     VA+ LA      ++ A +    + +  F  +TPT  N G  + 
Sbjct: 118 TFDGKRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQR 174

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVI
Sbjct: 175 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVI 234

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 235 PIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           PD+  +    N    LFSP +V  ++ +   E  ++ E Y    D   I   +   A
Sbjct: 295 PDITFELAKNNEEMYLFSPYDVEQVYGVPLSEISVS-EKYREMVDDKRIHKSKLKRA 350


>gi|196020388|ref|XP_002119099.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
 gi|190576963|gb|EDV18415.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
          Length = 300

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 101/316 (31%), Positives = 146/316 (46%), Gaps = 41/316 (12%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            Y RD      G  +L DRY L       E  Q  F+RVA   A    + +  A   Y+ 
Sbjct: 22  DYSRDQNLSESGKAMLLDRYLLEN-----ESYQDLFVRVATHYA----DNKNHAQRLYDY 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S F FM +TP L N G +     SCFL  V D L  I     EN  LA   GG+G  W 
Sbjct: 73  MSKFWFMPATPVLSNGGAKRGLPISCFLNEVGDGLKEIVEIWNENVWLASRGGGIGTFWG 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +  + G++ G++PFL V +   +A++QG  R+G+   YL   H ++EEF +L
Sbjct: 133 NVRSIGEKVANS-GRTSGIVPFLSVQDRLTLAISQGSLRRGSAAVYLPVSHPEIEEFTEL 191

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ T GD  RRT +++    I D FM  V  +  W L SP + S                
Sbjct: 192 RRPTGGDPNRRTLNLHHGVVITDKFMYAVENDLPWELVSPKDNS---------------- 235

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHS 581
                      +   + A  +W ++L    ETG P++ F D  N     S ++H   + +
Sbjct: 236 -----------IISIVKARDIWIRILLARIETGEPYLLFIDNVNKNAPDSYKRHNMEIKT 284

Query: 582 SNLCTEITLNSSSEET 597
           SNLC+EITL +  +  
Sbjct: 285 SNLCSEITLATGKDYK 300


>gi|323448023|gb|EGB03927.1| hypothetical protein AURANDRAFT_6442 [Aureococcus anophagefferens]
          Length = 212

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             ++S+E AVC L SINL  H         FD+ KL  T     + L+ V+D+N + +E+
Sbjct: 1   EYTASDEIAVCTLASINLTVHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEE 60

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK SN  HR +G+G+ G   AL  L  PY S +A  I  +  E I F A+ AS++LAQE 
Sbjct: 61  AKSSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQEL 120

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y S+ GS   QG+F  D   +            + R  W+ L+ R+   G RNS  +A
Sbjct: 121 GPYDSYAGSPTSQGLFQFDLWNVKP----------SDRWDWEGLRARLGEHGCRNSLLLA 170

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             PTA+ A I G ++S +P   N+Y +  ++G+F VVN +L+
Sbjct: 171 PMPTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLL 212


>gi|312879665|ref|ZP_07739465.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
 gi|310782956|gb|EFQ23354.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
          Length = 1095

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 137/301 (45%), Gaps = 36/301 (11%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLL 346
                 L++L  RY      G+  E P+  F+RVA  +A  E     + +  A  FY L+
Sbjct: 7   DLGENALKVLEKRYLRRDEAGNLAETPEGLFVRVAEAVAAPEAAHGGDPKAWAEVFYGLM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G D++ 
Sbjct: 67  ARGDFLPNSPTLMNAGTPLGQLSACFVLPVGDSMEEIFDALKHTALVHKSGGGTGFDFSD 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  +  T+G + G + FL++ + T   + QGG R+GA    LE  H DV +F+  +
Sbjct: 127 LRPAGDRVRSTSGVASGPLSFLELFDRTTEVIKQGGMRRGANMGILEASHPDVMDFVRAK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              G    R  + N +  + D F++ V  +  W L +P                      
Sbjct: 187 TEQG----RLGNFNISVGVTDRFLRAVRDDGSWDLVNPRTGE------------------ 224

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                      R + A  LWR ++   + TG P + F D     +P  H+G + S+N C 
Sbjct: 225 ---------TVRTLPARELWRLLVDSAWRTGDPGLVFLDRIEEDNPTPHLGRLRSTNPCV 275

Query: 587 E 587
            
Sbjct: 276 T 276



 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 150/370 (40%), Gaps = 42/370 (11%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVL 632
                  ++                 CNLGSINL+       + D++KL  T+R AVR L
Sbjct: 632 PGCHAFDANGFLVHNCGEQPLLPYESCNLGSINLVRMADEAGELDWEKLDRTVRHAVRFL 691

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D+VID NC+ + +  +     R IGLG+MG+   L L  + Y SPE++ +A E M FI  
Sbjct: 692 DDVIDANCYPLPEIAQRTRASRKIGLGIMGWADLLFLRRLRYGSPESLVLAGELMGFIRA 751

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
               AS  L +ERGA+ +++GSL  +                                  
Sbjct: 752 VGHEASEALGEERGAFPAWEGSLHQR---------------------------------- 777

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELK 811
            +   +RN+    +APT TI+ + G S  I+P++     +     D  V +N     +L 
Sbjct: 778 -QGRRLRNATVTTLAPTGTISLLAGCSSGIEPAFSLALRRRAFESDTLVLLNPVFQRDLA 836

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                 + +++ +    GS+   + +P  +K+ + TA E+     + + +  Q   D   
Sbjct: 837 ILGEPGKDILARV-LESGSLEGTD-VPLWMKQTYVTAHEVSLEDHVRTQAAFQAHTDNGV 894

Query: 872 SLNLY-LDEPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           S  +    E    +++  +  A   G K  T Y  R +    + + T +     +   P 
Sbjct: 895 SKTVNLPHEAGADQVERAFLLAHETGCKGITVYRDRCKETQVLYQGTGEVPSPGVPTKPK 954

Query: 929 TDPNSSTHSL 938
             P + T S 
Sbjct: 955 RRPAALTGST 964


>gi|294998841|gb|ADF58155.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           JG004]
          Length = 581

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 137/649 (21%), Positives = 243/649 (37%), Gaps = 122/649 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL-------------KETEKEKRA 339
           +   G Q+   +Y    NG   E  ++ F  VA  +A              + T+ +   
Sbjct: 26  YTTAGYQLFMKKY---SNGG--ESVRSRFQAVARAMAQHAPMVYPEWWDQDEYTKGKNWE 80

Query: 340 VEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F++++       STP L N G  +     SC    + ++LY  +  + E A+L K+S 
Sbjct: 81  QVFFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSH 140

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G     T     G  I    G+SQGV+P ++   +    V Q G R+G+    +   H D
Sbjct: 141 GTSFSLTNWPSEGDAIR--GGESQGVMPVIRDVINVMEEVAQ-GSRRGSCAYSINPRHGD 197

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
                                   N I  L+ +  + N GW L                 
Sbjct: 198 F----------------------WNVIDHLYKRTESNNVGWLLDDQ-------------- 221

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
                 + +     + +  ++      W++M+ +    G  + TF D  N    +     
Sbjct: 222 ------WCKDMAEKDPETLKR------WKRMMFVKLARGKGYFTFIDKMNRHLAEPFKRA 269

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLAST-IRTAVRV 631
              V +SNLC E  L ++   T  C + + NL  + +  +   F    ++   I   +  
Sbjct: 270 GLKVEASNLCQETVLPANDFYTFSCVILNYNLELYRSWPKHLVFIGQVMSDCNISEYLAT 329

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +D V   +   +EK  +     RA+G G++GF + L     P  S +A+ + +   + + 
Sbjct: 330 MDEVSVQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAMFLNNAIFKGMK 389

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A + +  LA+  G  +  +G                                      
Sbjct: 390 EQAEACNSWLAEVLGEPAGCRG-------------------------------------- 411

Query: 752 RVKTIGMRNSNCMAIAPTATIA-NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
               +G RN+  M + PT + A  + G S+ I       + K +  G+F  VN  L+  +
Sbjct: 412 ----LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEII 467

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++R L  E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ 
Sbjct: 468 QERGLDWEECARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQG 527

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLK 917
           QS+NLY     S   + +I+R A     + + YY+ S         T +
Sbjct: 528 QSINLYFTSNDSPAYISYIHRLAMEDPNILSLYYIYSMRGAGDISRTEE 576


>gi|297183206|gb|ADI19346.1| ribonucleotide reductase, alpha subunit [uncultured Chloroflexi
           bacterium HF0500_03M05]
          Length = 465

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 38/330 (11%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            +Y  L   +R A R LDNVID N ++++K +K     R IGLG+MGF   L  L + Y 
Sbjct: 1   MNYHGLRDVVRVATRFLDNVIDANTYSVDKIRKMTRDTRKIGLGVMGFADMLTKLRVSYD 60

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E +E+    M F+   +   S ELA+ RG + +F GS++D    P             
Sbjct: 61  SDEGLEMGSSIMRFVQRESDQMSQELAEVRGVFPAFNGSIYDAHGQPK------------ 108

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                 MRN+  + +APT TI+ I G S  I+P +   Y K N+
Sbjct: 109 ----------------------MRNACRLTVAPTGTISMIAGCSSGIEPLFALCYNKHNI 146

Query: 796 SGDF--TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            G      ++            + + +++ L    GS+   + +P   K++  T+ +I P
Sbjct: 147 LGGESLLYIDQEFEKAAHDEGFYSKELMNYL-ADGGSLQERDDVPGWAKRVFVTSADISP 205

Query: 854 MWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              ++  +  Q+ +D A S  + + +  +   +   Y  AW +  K     R+ S  +  
Sbjct: 206 EMHVKMQAAFQESVDAAISKTINFPNTATEDDVRSAYMLAWELACKGITVYRAGSREAEV 265

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +     D            S       P+
Sbjct: 266 LTAGSNNDEPTEEAETFSDASVLVERTRPA 295


>gi|309789877|ref|ZP_07684455.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
 gi|308228084|gb|EFO81734.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
          Length = 306

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 25/305 (8%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343
           A   +   +L  RY +    G   E P+  F RVA  +A  +          + R   FY
Sbjct: 10  ALSEIARTVLKKRYLIKDEQGKVTETPETMFQRVAETIAGIDARYGATPSQVKARTETFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++++   F  ++PTL N+G     LS+CF+  V D L  I+  ++  A++ +  GG G  
Sbjct: 70  HMMTQGLFEPNSPTLMNAGRPLGMLSACFVLPVDDSLESIYETMKHAALVHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++V N +  A+ QGG R+GA    L   H D+  F+
Sbjct: 130 FSRLRPHNDIVRSTMGVASGPVSFMEVYNYSTEAIKQGGTRRGANMGILRCDHPDILHFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            +++    D  R  + N +  I D FM+ V  +  + L +P              ++A  
Sbjct: 190 SVKQ----DLSRVTNFNISVAITDAFMQAVANDEEYNLLNPRTGL---------VQLAVR 236

Query: 524 NYERQADRGEIKVFR----KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              +    GE+ V      ++ A  ++  ++     TG P + F D  N  +P   +G  
Sbjct: 237 EPLKHPFTGEVLVEANQPMRLRARVVFDLIIQCAHATGEPGLFFVDRTNEGNPVPALGEY 296

Query: 580 HSSNL 584
            ++N 
Sbjct: 297 EATNP 301


>gi|153820501|ref|ZP_01973168.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
 gi|126508954|gb|EAZ71548.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
          Length = 277

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 44/307 (14%)

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            VR LD ++D   + +  A++S+   R +G+G++ +   L    + Y+   A  +   + 
Sbjct: 1   MVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGSANGLTHRTF 60

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E + +H + AS++LA+E+G    F  + + +G+ PID+         +L         WD
Sbjct: 61  EAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDI----DLVCAEPLHYDWD 116

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK++  G    V     
Sbjct: 117 KLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSVKASKDGILKQVVPEFT 176

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
              +     +  ++ ++  +DG                           +      QK++
Sbjct: 177 RLKE-----NYELLWNIGSNDG--------------------------YLHLVGIMQKFV 205

Query: 868 DQAQSLNLYLDEPS-------GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKG 918
           DQA S N   D  +        KKL      A+  G+KT YY  +R     E++  T+K 
Sbjct: 206 DQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHNTRDGAKDEQTDATVKV 265

Query: 919 VDGKLNA 925
            +    +
Sbjct: 266 QEDDCAS 272


>gi|323513934|gb|ADX89383.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2001_A]
          Length = 1076

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 186/473 (39%), Gaps = 27/473 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L  V    ++    K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNL-GVGWSSLVLNAIKKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P             +++   +  G+  
Sbjct: 64  AEKADK--AHLAMAARLFLGTMYKNAHGGFEERPHLY----------DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISL-NCRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +++  Y + ++   +        G+   ++ I AV + +  L    +TG  + T+ 
Sbjct: 347 LHAPEVYKAYHENYDSLKQTLNDYILSGKP--YKTIKAVEVLKLYLKQRQDTGRMYSTWL 404

Query: 565 DPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINLLAHFANNQ 615
           D  N          ++SSNLC   E  + + +  TA+  L   N+      + 
Sbjct: 405 DEANYH--TPFKEPIYSSNLCVAPETKILTRNGYTAIAELDGENVDIWNGEDW 455



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 133/366 (36%), Gaps = 53/366 (14%)

Query: 572  PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                 G   +  + T    N    E A+C L  I         +   ++        +  
Sbjct: 755  FLPTKGFKDTGEMYTNDVEN-VQGEIALCFLSCI------VAGRVSEEEYEDVAYYTLLG 807

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+     AL    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+         +    +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNKNV----DRVHTQKLRFDWESLRK 923

Query: 752  R-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
              +   G+RNS   A  P  + + +   + S+ P  Q+  +K + +         +    
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKKSGTTKVVFAAPDI---- 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             S +L+ D         P  + L+  Y  A  MG+K+ YY  S+S    E ST++  +  
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFY-YATKMGMKSWYYQNSKSGIKQEGSTIEPDESS 1070

Query: 923  LNAVPV 928
              +  +
Sbjct: 1071 CESCKM 1076


>gi|323512792|gb|ADX88246.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_D]
 gi|323513020|gb|ADX88473.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_C]
 gi|323513703|gb|ADX89153.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2005_A]
          Length = 1076

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 186/473 (39%), Gaps = 27/473 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L  V    ++    K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNL-GVGWSSLVLNAIKKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P             +++   +  G+  
Sbjct: 64  AEKADK--AHLAMAARLFLGTMYKNAHGGFEERPHLY----------DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISL-NCRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +++  Y + ++   +        G+   ++ I AV + +  L    +TG  + T+ 
Sbjct: 347 LHAPEVYKAYHENYDSLKQTLNDYILSGKP--YKTIKAVEVLKLYLKQRQDTGRMYSTWL 404

Query: 565 DPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINLLAHFANNQ 615
           D  N          ++SSNLC   E  + + +  TA+  L   N+      + 
Sbjct: 405 DEANYH--TPFKEPIYSSNLCVAPETKILTRNGYTAIAELDGENVDIWNGEDW 455



 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 132/366 (36%), Gaps = 53/366 (14%)

Query: 572  PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                 G   +  + T    N    E A+C L  I         +   ++        +  
Sbjct: 755  FLPTKGFKDTGEMYTNDVEN-VQGEIALCFLSCI------VAGRVSEEEYEDVAYYTLLG 807

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+      L    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHTLASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+         +    +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNKNV----DRVHTQKLRFDWESLRK 923

Query: 752  R-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
              +   G+RNS   A  P  + + +   + S+ P  Q+  +K + +         +    
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKKSGTTKVVFAAPDI---- 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             S +L+ D         P  + L+  Y  A  MG+K+ YY  S+S    E ST++  +  
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFY-YATKMGMKSWYYQNSKSGIKQEGSTIEPDESS 1070

Query: 923  LNAVPV 928
              +  +
Sbjct: 1071 CESCKM 1076


>gi|325171171|ref|YP_004251146.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323512566|gb|ADX88021.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323513245|gb|ADX88697.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_B]
 gi|323513472|gb|ADX88923.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_A]
 gi|323514162|gb|ADX89610.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2004_A]
          Length = 1076

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 186/473 (39%), Gaps = 27/473 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F++ +L  + E A   L  V    ++    K + D  S  D++ ALI S 
Sbjct: 6   VIKSNGQEVPFDASKLNRMAEWA-DNL-GVGWSSLVLNAIKKVSDKCSTLDIQNALIDSC 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
               +K   +  + AR  L  + +       ++P             +++   +  G+  
Sbjct: 64  AEKADK--AHLAMAARLFLGTMYKNAHGGFEERPHLY----------DFYNNMLILGLWK 111

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
            + +++    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VAM
Sbjct: 112 EMSYDAT---ELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVAM 168

Query: 327 GLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
            +   + E  +    V++Y  LS       TP L    ++   L+SC +    D    + 
Sbjct: 169 DIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSLE 228

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+         + G+G      R +   +     K  G +P+ +    +  A  Q   R
Sbjct: 229 AAIHNAYKQTVSNAGIGISL-NCRSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQ-EVR 286

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S 
Sbjct: 287 GGSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMSQ 346

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +++  Y + ++   +        G+   ++ I AV + +  L    +TG  + T+ 
Sbjct: 347 LHAPEVYKAYHENYDSLKQTLNDYILSGKP--YKTIKAVEVLKLYLKQRQDTGRMYSTWL 404

Query: 565 DPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGSINLLAHFANNQ 615
           D  N          ++SSNLC   E  + + +  TA+  L   N+      + 
Sbjct: 405 DEANYH--TPFKEPIYSSNLCVAPETKILTRNGYTAIAELDGENVDIWNGEDW 455



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 133/366 (36%), Gaps = 53/366 (14%)

Query: 572  PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                 G   +  + T    N    E A+C L  I         +   ++        +  
Sbjct: 755  FLPTKGFKDTGEMYTNDVEN-VQGEIALCFLSCI------VAGRVSEEEYEDVAYYTLLG 807

Query: 632  LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
            +DNVI +  +       S    R++G+G+     AL    + Y + E         E  S
Sbjct: 808  VDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLSYKTLEGKNYMHRLAEMHS 867

Query: 692  FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            ++   AS+ LA+E+G       + + +G  PID+         +    +  R  W+ L+K
Sbjct: 868  YYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNKNV----DRVHTQKLRFDWESLRK 923

Query: 752  R-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
              +   G+RNS   A  P  + + +   + S+ P  Q+  +K + +         +    
Sbjct: 924  DIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIKKSGTTKVVFAAPDI---- 979

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        ++LK  +  A+EI    +I+  +  QK+  Q 
Sbjct: 980  ----------------------------ENLKGKYEYAYEIPTKDMIDCYAIFQKFHGQG 1011

Query: 871  QSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             S +L+ D         P  + L+  Y  A  MG+K+ YY  S+S    E ST++  +  
Sbjct: 1012 ISADLWKDYSKYENEKIPMSELLNDFY-YATKMGMKSWYYQNSKSGIKQEGSTIEPDESS 1070

Query: 923  LNAVPV 928
              +  +
Sbjct: 1071 CESCKM 1076


>gi|326804461|ref|YP_004327265.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
 gi|290873874|gb|ADD65077.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
          Length = 581

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 137/649 (21%), Positives = 242/649 (37%), Gaps = 122/649 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL------------KETEKEKRAV 340
           +   G Q+   +Y      +  E  ++ F  VA  +A              E  + K   
Sbjct: 26  YTTAGYQLFMKKY-----SNEGESVRSRFETVARAMAQHAPTVYPEWWDQDEYTRGKNWE 80

Query: 341 E-FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           + F++++       STP L N G  +     SC    + ++LY  +  + E A+L K+S 
Sbjct: 81  QAFFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSH 140

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G     T     G  I    G+SQGV+P ++   +    V Q G R+G+    +   H D
Sbjct: 141 GTSFSLTNWPSEGDAIR--GGESQGVMPVIRDVINVMEEVAQ-GSRRGSCAYSINPRHGD 197

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
                                   N I  L+ +  + N GW L                 
Sbjct: 198 F----------------------WNVIDHLYKRTESNNVGWLL----------------- 218

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
               +N+ +     + +  ++      W++M+ +    G  + TF D  N    +     
Sbjct: 219 ---DDNWCKAMAEKDPETLKR------WKRMMFVKLARGKGYFTFIDKMNRHLAEPFKRA 269

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLAST-IRTAVRV 631
              V +SNLC E  L ++   T  C + + NL  + +  +   F    ++   I   +  
Sbjct: 270 GLKVEASNLCQETVLPANDWYTFSCVILNYNLELYRSWPEHLVFIGQVMSDCNISEYLAT 329

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           +D V   +   +EK  +     RA+G G++GF + L     P  S +A+ + +   + + 
Sbjct: 330 MDEVSIQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAMFLNNAIFKGMK 389

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A + +  LA   G     +G                                      
Sbjct: 390 EQAEACNSWLAAVLGEPEGCRG-------------------------------------- 411

Query: 752 RVKTIGMRNSNCMAIAPTATIA-NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
               +G RN+  M + PT + A  + G S+ I       + K +  G+F  VN  L+  +
Sbjct: 412 ----LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEII 467

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++R L  E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ 
Sbjct: 468 QERGLDWEECARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQG 527

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLK 917
           QS+NLY     S   + +I+R A     + + YY+ S         T +
Sbjct: 528 QSINLYFTSNDSPAYISYIHRLAMEDPNILSLYYIYSMRGAGDISRTEE 576


>gi|53803344|ref|YP_114954.1| ribonucleoside reductase [Methylococcus capsulatus str. Bath]
 gi|53757105|gb|AAU91396.1| ribonucleoside reductase precursor [Methylococcus capsulatus str.
           Bath]
          Length = 1317

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 139/374 (37%), Gaps = 46/374 (12%)

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLD 633
             ++ L               C LGS++L    +        F+ ++LA     AVR+LD
Sbjct: 653 FDANGLYVHNCAEQPLPAYGCCCLGSLDLTRFVSRPFTPEAAFEAERLAEVATIAVRMLD 712

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV+D     + + ++     R IGLG  G   AL +L + Y S  A ++A      +   
Sbjct: 713 NVLDTTYWPLARQRQEAQAKRRIGLGFTGLGDALAMLGLRYDSAAARDMAAGIARRLRDA 772

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS  LA+E+GA+  F+   +                   LA    + LP + L+ R+
Sbjct: 773 AYLASTALAREKGAFPLFEAEPY-------------------LASPFVAGLP-EPLRARI 812

Query: 754 KTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
              G+RNS+ ++IAPT TI+       S  I+P Y   Y++     D +    F V +  
Sbjct: 813 LESGIRNSHLLSIAPTGTISLAFADNTSNGIEPPYAWTYLRKKREPDGST-REFPVEDHA 871

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            R             +  + G+       L     TA +I  +  +   +  Q ++D + 
Sbjct: 872 YRL------------YRATAGDRP-----LPPAFVTALDISALDHMRMLAAVQPFVDASI 914

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S  + +           +Y +AW  GLK     R    T                   +D
Sbjct: 915 SKTVNVPADYPYADFQHLYLEAWKAGLKGLATYRPNPVTGAVLEATPTHGISRPEFDESD 974

Query: 931 PNSSTHSLGIPSSC 944
           P+       +P+  
Sbjct: 975 PDRRLRLDEVPAPA 988



 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 28/300 (9%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           + L++L ++Y  H         +  F RVA  LA  E   ++    F++ L S  F+ + 
Sbjct: 6   ISLEVLREKYARHGETC----AEEIFARVADALAAAEESPDEWRPLFFSALESG-FIPAG 60

Query: 356 PTLFNSGT-RHPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +GT     L +CF+  V D +        GI+ AL E A   +  GG+G D++ +
Sbjct: 61  RIMSAAGTGMQATLINCFVQPVGDSVSEETDGKPGIYTALAEAAETMRRGGGVGYDFSAI 120

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA +H T  ++ G + +++V + +   V   G R+GA    L   H D+ EF+  + 
Sbjct: 121 RPRGARVHTTESRASGPVSYMRVFDRSCETVESAGSRRGAQMGILRCEHPDIFEFVRAKD 180

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             G+      + N +  + + FM+ V  +  W L    E S      G         Y R
Sbjct: 181 RPGE----LTNFNLSVALNEDFMRAVETDGPWELTHRAEPSPEQQCEG--------AYLR 228

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +     + V+R + A  LW  ++   ++   P + F D  N  +   +   + ++N C  
Sbjct: 229 EDG---LWVYRSVPARELWELIMRSTYDHAEPGVLFIDRMNRENNLSYCERIEATNPCVT 285


>gi|319442525|ref|ZP_07991681.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 323

 Score =  218 bits (554), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 144/352 (40%), Gaps = 47/352 (13%)

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           V + +   +    +   +   CNLGS+N+ A       D    + TI TA+R L  V D 
Sbjct: 3   VSTPSTFNDDLTYAEIGDDISCNLGSLNIAAAV-----DSPDFSRTIETAIRGLTAVSDQ 57

Query: 639 N-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
               ++   ++ N+   AIGLG M     L   HI Y S E ++  +     + +  + A
Sbjct: 58  TFIDSVPSIREGNNASHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYECLKA 117

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ER   + SF+ S +  G F               + E+    +++      W  
Sbjct: 118 SNAIARERGRKFGSFETSDYASGEFFDRYDPASFAPATDRVREIFANSSIHVPDAADWAA 177

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++                
Sbjct: 178 LKDAVMADGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRK--------------- 222

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                    E  I  + Y          + +D  +    A+EI    +I++ +   K++D
Sbjct: 223 ---------EGKIGRVYYPA------PHMDNDNLEYFQDAYEIGYEKIIDTYAVATKYVD 267

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           Q  SL L+  D+ + + ++     AW  G+KT YY+R R  T++  + ++G 
Sbjct: 268 QGLSLTLFFRDDATTRDINRAQIYAWRKGIKTLYYIRLRQ-TALTGTEVEGC 318


>gi|66732768|gb|AAY53359.1| gp56 [Listeria phage P100]
          Length = 343

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 150/326 (46%), Gaps = 50/326 (15%)

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           I +   + +  VCNL SINL + F+      D +   +   VR+LDNVI++N   + +A 
Sbjct: 61  IVVTKEAGDFVVCNLSSINLGSVFSEE----DVIDRLVTIQVRMLDNVIELNKLPVPQAL 116

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G+   L    I + S EA   AD   E I+FH I AS++LA+E+GA
Sbjct: 117 ITNQKYRAVGLGTFGWHHLLAKKGIHWDSEEATNFADSLYERIAFHTIEASMKLAEEKGA 176

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  FK S WD G +               +    +   W +L K+VK  G+RN   MA+A
Sbjct: 177 YPYFKDSSWDTGEY--------------FSSRNYTSDTWVDLAKKVKEKGIRNGYLMAVA 222

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + A I G + SIDP Y + Y +        V+   L                     
Sbjct: 223 PNMSTAQIAGSTASIDPIYDSFYYEEKKDYRRPVIAPELNL------------------- 263

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                       +    + +A++++ +  ++   +RQ+ IDQA S N Y+       KL 
Sbjct: 264 ------------NTYAFYKSAYKVNQIQSVKQNGKRQRHIDQAISFNFYVPSGIKASKLL 311

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVE 912
            ++  AW  GLKTTYY+RS      E
Sbjct: 312 ELHTTAWSEGLKTTYYVRSNDIDVEE 337


>gi|157325079|ref|YP_001468504.1| gp124 [Listeria phage A511]
 gi|66733087|gb|AAY52905.1| gp124 [Listeria phage A511]
          Length = 343

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 149/326 (45%), Gaps = 50/326 (15%)

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           I +   + +  VCNL SINL + F+      D +   +   VR+LDNVI++N   + +A 
Sbjct: 61  IVVTKEAGDFVVCNLSSINLGSVFSEE----DVIDRLVTIQVRMLDNVIELNKLPVPQAL 116

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +RA+GLG  G+   L    I + S EA   AD   E I+FH I AS++LA+E+GA
Sbjct: 117 ITNQKYRAVGLGTFGWHHLLAKKGIHWDSEEATSFADSLYERIAFHTIEASMKLAEEKGA 176

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y  FK S WD G +               +    +   W +L K+VK  G+RN   MA+A
Sbjct: 177 YPYFKDSSWDTGEY--------------FSSRNYTSDTWVDLAKKVKEKGIRNGYLMAVA 222

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + A I G + SIDP Y   Y +        V+   L                     
Sbjct: 223 PNMSTAQIAGSTASIDPIYDYFYYEEKKDYRRPVIAPELNL------------------- 263

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                       +    + +A++++ +  ++   +RQ+ +DQA S N Y+       KL 
Sbjct: 264 ------------NTYAFYKSAYKVNQIQSVKQNGKRQRHVDQAISFNFYVPSGIKASKLL 311

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVE 912
            ++  AW  GLKTTYY+RS      E
Sbjct: 312 ELHTTAWSEGLKTTYYVRSNDIDVEE 337


>gi|254443062|ref|ZP_05056538.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
 gi|198257370|gb|EDY81678.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
          Length = 1164

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 110/562 (19%), Positives = 191/562 (33%), Gaps = 99/562 (17%)

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            ++   HPQ S+CFL  + D +  I         +     G+G + + +R     I    
Sbjct: 206 LSNAYTHPQASACFLMGIEDSMEKILSHQIAEGGVFSSGSGIGVNLSSIRSSKEPI-AGK 264

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RT 476
           G + G I F K  +  A A+  GGK R+ A    L   H D+ +F+  +    D  +   
Sbjct: 265 GFASGPISFDKGFDRMAGAIKSGGKTRRAARMVLLFADHPDIFQFISTKNEQEDIGKIVL 324

Query: 477 HDMNTANWIPDLFMKRVTQNAG-------WTLFSPDEVSDLHD------LYGK------- 516
            + N +  +         + +          L  P      +D      LYG+       
Sbjct: 325 REHNVSVALKKKAEVFAVKGSPAERMAARIVLDMPMVTDRQYDSGMDELLYGETLGHQNA 384

Query: 517 --------EFEIAYENYERQADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKD 565
                   +F  AY+     A R      +      A  +   +   ++    P     D
Sbjct: 385 NHSVSLKGDFWKAYQTKGEYATRWVSDPTKVEDTFKAEEILDAIAECVWHNAEPGTHNND 444

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLAS 623
             NI +P +  G + +SN C+E    + +     CNL S N+   +     +   +KL  
Sbjct: 445 FINIWNPVKSDGDISTSNPCSEYLHLNFTS----CNLSSFNVFRFYDRDEKKMKVEKLQK 500

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            IR A+   D  I+     I +     + +R  G+G       L  + IPY S E   IA
Sbjct: 501 AIRLAMIAADLNIEEGGFPISEIAAGTYRYRTTGIGYANVGGLLMAMGIPYDSDEGRLIA 560

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGS----------------------------- 714
            + +  ++     AS E+ QE GAY  F+ +                             
Sbjct: 561 SQLVSLLTSTCWKASSEMGQELGAYPRFESTEADLREVLELHKAVQDLSGAFAEGKDVEK 620

Query: 715 -------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---------WDELKKR 752
                           QG+  +D +   A+  ++ +++               W E+   
Sbjct: 621 EAEVIFKKRGSRLPMSQGLTALDVLKGYAKSFEKHSVDAPEIAKQLQDVNAATWTEVLAA 680

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV----SQSIDPSYQNLYVKSNMSGDFTVVNSFL-V 807
            +    RNS    +APT TI+   GV    + S +P Y  +  K+   G    + + L +
Sbjct: 681 KR---FRNSFTTVMAPTGTISAPMGVYDEGTTSAEPDYTLVKYKNLSGGGMLKMFNTLAL 737

Query: 808 NELKQRDLWDEAMISDLKYHDG 829
             L+ +      +        G
Sbjct: 738 EGLRTQGYTTHQVREAALEVAG 759



 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMW 855
           + EL+++     A   +     G+  ++E IP  LK  H  AF+           I    
Sbjct: 812 LEELREKGQTGGANDEESIVLAGA-SHVEDIP-WLKSEHLGAFDCSATSGTGVRSIQAKG 869

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVE 912
            +      Q ++  A S  + L    + + +         MG+K    Y   S+  +   
Sbjct: 870 HMRMLGAIQPFLSGATSKTVNLPYTATREDIKQCLVDCHEMGVKCVALYRADSKGISVFN 929

Query: 913 KSTLKGVD 920
             T +G  
Sbjct: 930 VDTPEGRK 937


>gi|15807364|ref|NP_296095.1| ribonucleoside-diphosphate reductase-like protein [Deinococcus
            radiodurans R1]
 gi|6460188|gb|AAF11919.1|AE002068_2 ribonucleoside-diphosphate reductase-related protein [Deinococcus
            radiodurans R1]
          Length = 1418

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 151/395 (38%), Gaps = 60/395 (15%)

Query: 566  PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
                       GV+  ++ C EI L         C+LG+INL A+   + FD+    + +
Sbjct: 874  TVEQVHAFDANGVL--AHNCGEIPLTVGEP----CDLGAINLAAYVRGSDFDFAAFRADV 927

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            RT VR LD+V+D+N   +E  + ++   R +GLG+MG   AL  + + Y +    +   +
Sbjct: 928  RTCVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKMGLRYDNESGRQAIYD 987

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             M  +   A++ S  L QERG Y  ++ +                               
Sbjct: 988  IMSALREEAVAESERLGQERGFYPVYERN------------------------------- 1016

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                +++V     RN   + +APT T + + GVS  I+P +     +   S    ++   
Sbjct: 1017 ----REQVPHDPRRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLAPL 1072

Query: 806  LVNEL---------KQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
             V  L         ++   WD   +   +  + GS+  +  IPD L+++   A +I P+ 
Sbjct: 1073 FVELLESYPAPKGMEKDGGWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDISPVD 1132

Query: 856  LIESASRRQKWID-------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             +      Q+  D        + S  +   +  S   +   Y +A+  G K     R  S
Sbjct: 1133 HVRMQGTVQRAFDDGGQLAANSLSKTINLPNSASVDDVKSAYEEAYRTGCKGITVYRDGS 1192

Query: 908  ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                  ST K    K       +P + +     P+
Sbjct: 1193 RQFQVLSTSKK-KAKTEERGSAEPLADSKPAEAPA 1226



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 39/293 (13%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLTTVPDDLYGIFGALQ 388
            + EK+ V   N     +    +P L  S   +     +     +T V DD+ GI  A +
Sbjct: 236 PDGEKQPVSVRNWTRVVYGQAISPELVASARANGVQIVRTLPEGVTAVADDMGGIIDAAR 295

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF-LKVAND-------------- 433
           + A +AK +     D + +R  GA I G+ G S G + F +++ ++              
Sbjct: 296 QVAEIAKLNIEPRIDLSAMRPEGAPIKGSGGTSSGPVSFLMEIFDNFIEWANRGAEDSGP 355

Query: 434 ----------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTA 482
                         V QGG R+GA  A +   H DV +FL  +    +         N +
Sbjct: 356 INTLRYVYAPVLRVVRQGGTRRGAGMATISIGHPDVLDFLTAKDLDREAAEGDISTFNIS 415

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-----RQADRGEIKVF 537
             +   F   +  +  WT+ + D V   +    +E E A    E         +G     
Sbjct: 416 ILVDTKFWDTLQADGVWTIDAQD-VPGKYFPVPQEGEYAGTFPELPTRAEDGAKGVPVYG 474

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTE 587
             I A  LW ++    + TG P + F D  N  S  +++G    + S+N C  
Sbjct: 475 SGIPARWLWDQIAQHAWSTGEPGLIFNDRVNEYSALKNLGERYEIRSTNPCVT 527



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 36/178 (20%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
            F+     I   +Y    +G         F R+A  +A  E  + +   A ++Y+L++  
Sbjct: 79  HFDENAQHIAKRQYLQGNDGDI----SGMFWRIADWVAGAEAPEARQGWAQQYYDLMAEK 134

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTV----PDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+       P    G+    ++ A++ K  GG G +  
Sbjct: 135 KFCPGGRVLAGAGTQHGNVLNCFVQGATEHDPSSFEGVMEVAKKLALVTKVGGGNGVNLD 194

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
             R        ++    GV  +                       Y+   H DV++F+
Sbjct: 195 VYRPR----AQSSRSDNGVRGW----------------------VYMSAEHADVQDFI 226


>gi|169831430|ref|YP_001717412.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638274|gb|ACA59780.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 1121

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 133/344 (38%), Gaps = 43/344 (12%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAV 629
             +    ++ +               C LGS+NL       +     D++ L  T+R  +
Sbjct: 629 PGINAFDANGIVAHNCGEQPLSPGESCLLGSVNLARMLKPGRDGYVVDWELLRDTVRLGI 688

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R LDN+ID+  + +E   ++    R +GLG  G    L  + +PY + E    A    + 
Sbjct: 689 RFLDNLIDVAEYPLEFIAEATRATRKVGLGYTGLHDLLIKMGLPYDAEEGRRFAGTVFKA 748

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +   A++ S ELA ERG +  ++ S++              E R                
Sbjct: 749 VQDAALAYSRELAGERGCFPEWERSVFH-----------PHEKR---------------- 781

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                    RN+ C+ +APT ++  I G     I+P +   Y K         V S L  
Sbjct: 782 ---------RNAACITVAPTGSVTTIAGCEGYGIEPIFAVAYTKDTDVAGSFEVFSPLFL 832

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E  +R      ++S++    G    +E +P +L +I   A EI P   I   +  QK++ 
Sbjct: 833 EACERLGVSREVMSEV-ARRGGCQGVEGVPPELARIFKGAQEISPRDHILMQAEVQKYVC 891

Query: 869 QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            A S  +   +  +   ++  YR A+ +GLK     R      V
Sbjct: 892 NAVSKTINLPNSATIHDIETCYRLAYELGLKGVTVFRDGCKQGV 935



 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 40/301 (13%)

Query: 292 AFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM--GLALKETEKEKRAVEFYNLLSS 348
                G ++   RY       R+ E  +    R+A    LA K  ++     +F   +  
Sbjct: 6   QLSDSGQKVFEARYAAKDEQGRVTETFEQAVHRLARTTALAEKAQDRAAWEEKFAASIGG 65

Query: 349 FHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             F+ STP   N G      Q  +CF+  V D L  ++  L++ AM+ K  GG+G +++ 
Sbjct: 66  LLFVPSTPIWANIGKTDRPWQPGACFVLAVEDSLESMYQTLKDTAMVFKSGGGVGYNFSA 125

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ +  T G++ GV+  +++ + ++  V QGG R+GA    L   H ++  F++  
Sbjct: 126 IRPRGSMVRSTKGQASGVVELIRLYDASSGMVMQGGVRRGASMGILNIDHPEIIHFIN-S 184

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K  GD        N +  + D FM+ + ++  W L    E                    
Sbjct: 185 KRGGD----ITHFNLSVGVTDAFMEALERDEDWPLVFNGE-------------------- 220

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V + + A  LW  +       G P I F D     +P      ++++N C 
Sbjct: 221 ---------VHQTVPARELWDLITESAHACGDPGIIFLDRLQRDNPVPEK-KINATNPCV 270

Query: 587 E 587
            
Sbjct: 271 T 271


>gi|169838755|ref|ZP_02871943.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 228

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 148/230 (64%), Gaps = 3/230 (1%)

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL  H   N++D+ +L  ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF 
Sbjct: 1   MNLSRHLNGNEWDWRRLEDSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFT 60

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y S E+ E+ D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID
Sbjct: 61  DVLERLRLAYDSEESYELIDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPID 120

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +I +L + RD ++ ++R S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +D
Sbjct: 121 TIDILEKNRDIDVKISRNSSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLD 179

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           P +  ++ +S ++G F  VN  LV ELK R LW E +  +L  + G I N
Sbjct: 180 PRFTQIFSRSTLNGKFLEVNPNLVRELKDRSLWSE-VKDELLINQGDIQN 228


>gi|78223117|ref|YP_384864.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194372|gb|ABB32139.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 279

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 139/306 (45%), Gaps = 36/306 (11%)

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +  +  +   D+  LA  I+TAVR LD+ ID N + +   +  +  +R IGLG+MG+   
Sbjct: 1   MARYLKDPGIDFPSLAEDIKTAVRFLDDTIDANIYPLPAIELMHKGNRKIGLGVMGWADL 60

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L +PY  P++  +A   M+F+   +  AS ELA+ERG + +F GS++D    P    
Sbjct: 61  LLRLGLPYNHPQSFALARSLMKFVRDTSRKASAELAEERGVFPNFAGSVYDAPDRPR--- 117

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                                          +RN+    IAPT T+A I   S  I+P +
Sbjct: 118 -------------------------------VRNATTTTIAPTGTLATIADCSSGIEPLF 146

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y ++ +  + T +N + +N  K+R L+ + ++  +    G++  I  IP D++++  
Sbjct: 147 ALAYKRNVLGTELTEINGYFLNVAKERGLFSDELMQKVM-EQGNLRGITGIPADIRRLFK 205

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA EI     IE  +  Q++ D A S  + L    +   +   +  A+  G+K     R 
Sbjct: 206 TALEIPAADHIEMQAAFQEYTDNAVSKTVNLPARATRGDVAKAFLLAYEKGVKGITVFRY 265

Query: 906 RSATSV 911
            S    
Sbjct: 266 GSKKGT 271


>gi|83816554|ref|YP_444285.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
 gi|83757948|gb|ABC46061.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
          Length = 932

 Score =  214 bits (546), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 152/336 (45%), Gaps = 58/336 (17%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH--- 641
           C+EI L S  +E+ VC L S+N L +      D  K    + T  + LD V+        
Sbjct: 632 CSEIALPSGPDESFVCCLSSMNALHY------DDWKDTDAVETLTQFLDAVMQEFIDGAK 685

Query: 642 ---TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +++A +    HRAIG+G++G+ S L    IP+ S EA     E  + I   + +AS
Sbjct: 686 GMAHMDRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAAS 745

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA   G     +G                                           G 
Sbjct: 746 AELADRFGEPPVLEG------------------------------------------YGR 763

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+  MA+APT + + I G VS SI+P   N +V+       T  N  L   L+++    
Sbjct: 764 RNATTMAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLQALLQEKGRDT 823

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +A+  ++   DGS+ +++ + D+ K +  T  EI  M +I+ A+ RQK IDQ+QSLNL +
Sbjct: 824 DAVWDEIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAI 883

Query: 878 DEPSG--KKLDFIYRQAWLMGLKTTYY-LRSRSATS 910
           D  S   K ++ +Y +AW  G+K+ YY     +A S
Sbjct: 884 DPGSTPVKDINRLYVEAWKKGVKSLYYQHGVNAAQS 919



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 103/294 (35%), Gaps = 57/294 (19%)

Query: 298 LQILYDR-YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            +    R Y L   G     P+     +A   A    E +  A  FY  ++  ++  ++P
Sbjct: 22  ARTFLRRGYLLEGTG-----PEDRVREIAEH-AEGLLEMDGFADRFYEYMARGYYSLASP 75

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
              N G       SCF + + D +  I     E  M+ K  GG    +  VR  GA I  
Sbjct: 76  VWANFGLDRGLPISCFGSYIDDSMEAILNTHAEVGMMTKVGGGTSGYFGDVRPRGASITN 135

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            NG S G  PF ++ +     V+QG  R+G    Y++  H DVEE+L+++     +    
Sbjct: 136 -NGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPDVEEWLNIQT----EGDAI 190

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             M     + D +M+ +                                           
Sbjct: 191 QTMMYGVVVGDDWMEAMIDGDS-------------------------------------- 212

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTE 587
                  ALW K++      G P+I F+       PQ +      VH+SNLC  
Sbjct: 213 ----DKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDKGYDVHASNLCLT 262


>gi|218661576|ref|ZP_03517506.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 569

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 124/323 (38%), Gaps = 25/323 (7%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW  +    + +  P I F    N        G +  SN C+E        + 
Sbjct: 2   KTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMFL----DD 57

Query: 598 AVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
             CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +R 
Sbjct: 58  TACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEYRT 117

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  + 
Sbjct: 118 LGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAPNR 177

Query: 716 WD------------------QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                                    ID + L+     +  +   ++  WD+  +  +  G
Sbjct: 178 ESMLRVIRNHRRAAYAETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALELGEQHG 237

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V E  +   +
Sbjct: 238 YRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGY 297

Query: 817 DEAMISDLKYHDGSIGNIERIPD 839
            E+ I++++ +    GN+ + P 
Sbjct: 298 SESQIAEIEAYAVGHGNLNQAPA 320



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 436 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLKANALYRDGSK 491


>gi|121606643|ref|YP_983972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
 gi|120595612|gb|ABM39051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
          Length = 1184

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 149/404 (36%), Gaps = 61/404 (15%)

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+       +   ++ +A            E       +         Q     V  +
Sbjct: 619 EKYDAWVADKALVKTQRFAA-------TITAIEPAGVEPVYDTT------QPDGNTVIFN 665

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTAVRVLDNV 635
            L T             C+LG I L              +FD++   +++ T VR LDNV
Sbjct: 666 GLVTGQCGEQPLPPYGCCDLGPIILTRFVRHPFGFGGEPEFDFEAFEASVATQVRALDNV 725

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +++    + + +  +   R IG+G  G  +AL +L + Y +PE  ++A      +   A 
Sbjct: 726 LEVTFWPLPQQQTESSAKRRIGVGFTGLGNALAMLRLRYDAPEGRDMAARIAVRMRDAAY 785

Query: 696 SASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +AS ELA+E+GA+  F  + +   G F                    SRLP   L++ ++
Sbjct: 786 AASSELAKEKGAFPKFDANGYLATGTF-------------------ASRLP-AALQQAIR 825

Query: 755 TIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
             G+RNS+ ++IAPT T++       S  I+P++  +Y +     D +    + V +   
Sbjct: 826 AHGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWMYKRKKRESDGSTTE-YAVEDHAW 884

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R           +   G +       + L     +A ++     I      Q +ID A S
Sbjct: 885 RLY---------RELGGDV-------NKLPGYFVSALDMSATSHIAMMQAVQPFIDTAIS 928

Query: 873 LNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             + +           +Y QAW  GLK     R  +       T
Sbjct: 929 KTVNVPADYPYGDFKSLYHQAWRAGLKGLATYRPNAILGAVLET 972



 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 117/299 (39%), Gaps = 29/299 (9%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y            +  + RVA  LA  E   E+EK    F   L +        
Sbjct: 21  DVLKEKYLKPGESGV----EDVYRRVARALASVELPAEREKHEALFLENLHAGAIGAGRI 76

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D + G        I+ AL+E A   +  GG+G D++ +R
Sbjct: 77  MSAAGTAIQATLINCFVQPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVGYDFSRIR 136

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T   + G   ++ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 137 PRGAEVKATASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVHEFITAKRT 196

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FM+ +  +  W L           +    F+ A       
Sbjct: 197 PG----RWNNFNVSVGMSDGFMQALNDDQPWELVH-KAKPGAALMAKGAFQRA------- 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + V++ ++A  +W  ++   ++   P I F D  N  +  ++   + ++N C  
Sbjct: 245 ---DGLWVYQTVAAREMWDTVMRSAYDFAEPGILFLDNINTDNNLRYCEAIAATNPCVT 300


>gi|82548289|gb|ABB82980.1| ribonucleotide reductase alpha subunit [uncultured organism
           HF70_19B12]
          Length = 652

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 158/444 (35%), Gaps = 83/444 (18%)

Query: 348 SFHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDLYGIFGA----LQENAMLAKYSGGLG 401
             +   ST       +   HPQ  +CF+ +V D L G   +        A+L KY  G G
Sbjct: 193 HRYIDPSTGELMTSTNAYEHPQPHACFIQSVSDSLVGGNDSIMGLWNREALLFKYGSGTG 252

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVE 460
           ++++ +RG G  +    G S G++ FLK+ +  A A+  G   R+ A    L+  H D+E
Sbjct: 253 SNFSNIRGSGEPLS-GGGTSSGLLSFLKIGDRAAGAIKSGGTTRRAAKMVTLDLDHPDIE 311

Query: 461 EFLDLRKNTGDD-----------RRRTHDMNTANWIPD---------------------- 487
           E++D + +  +            +   + +  A W  D                      
Sbjct: 312 EYIDWKLSEEEKVSALVIGSNLLQGHANAIMDAIWNYDGNGDKLDVNDNLLLRKAAAKAL 371

Query: 488 ----------LFMKRVTQNAGWTLFSPDEVSDLHDLYG--------------KEFEIAYE 523
                      F+   +Q      F   +     + YG                F  A E
Sbjct: 372 RNHVPNSHVKRFLDLASQGWKSIQFDTMDTDWQGEGYGTVSGQNSNNSVRVPNSFMDALE 431

Query: 524 N------YERQADRG------EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           N      Y R   +       E    R + A  LW K+    +    P + F    N   
Sbjct: 432 NDGIWNLYHRTELKRANEEGREPSPCRSMPAKELWDKVAYTAWACADPGVQFDTTINEWH 491

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAV 629
                G ++ SN C+E        +   CNL SINLL +F     +FD      ++R   
Sbjct: 492 TCPEGGRINGSNPCSEYMFL----DDTACNLASINLLHYFDTGTQKFDVASFQHSVRLWT 547

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             L+  + +     E+  + ++ +R +GLG     S L  + +PYA   A  +       
Sbjct: 548 ITLEVSVLMAQFPSEQIARKSYEYRTLGLGYCNLGSLLMHMGLPYADDRAYAVCGALTSI 607

Query: 690 ISFHAISASVELAQERGAYSSFKG 713
           +   + + S ELA   G +  ++ 
Sbjct: 608 MCGESYATSAELAGALGPFPKYEE 631


>gi|295695122|ref|YP_003588360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
 gi|295410724|gb|ADG05216.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
          Length = 1483

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 120/309 (38%), Gaps = 38/309 (12%)

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++ L  T+RT VR  D VID   +  E+ +++    R +GLG+MG    L    + Y S 
Sbjct: 969  WEALEETVRTGVRFQDAVIDATYYPFEENRENQLGERRVGLGIMGLHDLLIHCGVRYGSE 1028

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            E+  + D  +  ++  +   SVELA+E G +  F+   + Q  +          V     
Sbjct: 1029 ESTRLIDVLIGMMAEWSYLESVELAKENGPFPRFETEKFLQSGYMRHMAAERPHVV---- 1084

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                         + ++  G+RN   M IAPT T   + G S   +P Y   Y +++  G
Sbjct: 1085 -------------EAIRKYGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFRNSRLG 1131

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
             F      + + L                H G   + E +PD       TA E+ P   +
Sbjct: 1132 MFEENAQIVDDYLA--------------LHPG--ADREHLPD----YFVTAMELTPEEHV 1171

Query: 858  ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
               +  QKWID + S      E  + +    +Y  A+ +G K     R  S +    +  
Sbjct: 1172 RVQAALQKWIDSSISKTCNAPESYTVEDTKQLYDLAYDLGCKGVTIYRDGSRSEQVLALS 1231

Query: 917  KGVDGKLNA 925
            +    K  A
Sbjct: 1232 EDKLKKEGA 1240



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 32/249 (12%)

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
             SG    +     +    D    I   L +               + +R    ++ G N
Sbjct: 294 LESGVVMTEEVLGTVLVPGDSRGTIAETLGDMWEEMARGRRTAVILSSLRPRYTYVKGVN 353

Query: 419 GKSQGVIPFLKVANDT--------------------AVAVNQGGKRKGAVCAYLETWHID 458
           G+S G   +  + +                           QGG R+GA+   L   H D
Sbjct: 354 GRSSGAYSWGILYDKGNQVFGDGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHAD 413

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  F+  ++  G         N +  I + FM+   +   W+L  P    +  D +  +F
Sbjct: 414 LHRFIQAKQVEGV----ITGANVSVGISEEFMQVKQRGGDWSLGFPR--MEEMDEFDGDF 467

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                    +A   ++ V   + A  LW +++T  +++  P + F    N  S   +   
Sbjct: 468 GR------WEATGRKLVVTETLPAEELWEEIITSAWKSAEPGVVFLGRYNAMSNSWYYNP 521

Query: 579 VHSSNLCTE 587
           + ++N C  
Sbjct: 522 IIATNPCFH 530



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 39/239 (16%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLT 374
            P+  + R+A G A    +       FY L S + ++       + GT       +CF+ 
Sbjct: 95  SPREMWRRIAKGAAAVTKDPALWEERFYQLQSGWKYVPGGRINASMGTGFQTTSYNCFVI 154

Query: 375 T-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V   L     +  +   +   SGG+G + + +   G+ I  + G              
Sbjct: 155 PSVGPRLRDYAKSFGQTLEIQARSGGVGMNLSRIPPRGSLIPVSKGP------------- 201

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                     R+  +   L+ WH D+ +FL           R         +   F++ V
Sbjct: 202 ----------RRSHLQLVLDVWHPDLFDFLQEAYPHSTKVVR---------VNRAFLQAV 242

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
              A WT   PD   + +D     ++     + +Q    +      + A+ ++ K+L  
Sbjct: 243 EDRADWTFVFPDSSFEGYD---DLWDGDLAKWMKQDLPVKYGT--TVPALTVYDKILES 296


>gi|268318085|ref|YP_003291804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Rhodothermus marinus DSM 4252]
 gi|262335619|gb|ACY49416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Rhodothermus marinus DSM 4252]
          Length = 1354

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 140/345 (40%), Gaps = 19/345 (5%)

Query: 596  ETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            + + CNL S+NL      +  FD ++  + +R  +  ++ ++D   +  EK  +++H +R
Sbjct: 759  DNSACNLASLNLRKFQREDGSFDVERFRAAVRIFITAMEILVDNAGYPSEKIAQNSHDYR 818

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA--QERGAYSSFK 712
             +GLG     + L  + +PY S E   +A      +   A + S E+A  +  G +  F+
Sbjct: 819  PLGLGFANLGAMLMAMGLPYDSDEGRAVAGAITAIMHAEAYARSAEIAAIEHIGPFPGFE 878

Query: 713  GSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
             +              + ++       +   +R     +    +  G RN+    +APT 
Sbjct: 879  KNREPMLEVMRMHQAAVEDIHLSCPAYLKEAARESMARMVALGERYGYRNAQATVLAPTG 938

Query: 771  TIANICGV-SQSIDPSYQNLYVK---SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            TI+ +    +  I+P    +  K       G F +VN+ +   L++    +E +   L Y
Sbjct: 939  TISFMMDCDTTGIEPDIALVKYKLLAGKGDGMFKIVNNTVPIALRRLGYSEEQIKDILAY 998

Query: 827  --HDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYL 877
               + +I     + ++   +   AF+       I  M  I+  +  Q +I  A S  + +
Sbjct: 999  IEENDTIEGAPHLKEEHLPVFDCAFKPYKGQRFIHYMGHIKMMAACQPFISGAISKTVNM 1058

Query: 878  DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
             E  + +++   Y Q W +GLK     R  S  S   ST K    
Sbjct: 1059 PEHVTVEEIMDAYIQGWKLGLKALAIYRENSKRSQPLSTRKEDKK 1103



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 120/319 (37%), Gaps = 51/319 (15%)

Query: 310 NGSRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYNLLS----SFHFMCSTPTLFN 360
            G R    +    RV   +A            + A  FY+ L+      +   ++P  FN
Sbjct: 91  EGKREYSLKQLIHRVTRTIADWGKAQGYFATPEDAERFYDELTWLCLHQYGAFNSPVWFN 150

Query: 361 SGTRH------------------------------PQLSSCFLTTVPDDLYGIFGALQEN 390
            G  H                              PQ S+CF+ +V D +  I+  + E+
Sbjct: 151 VGLYHQYGVRDTGSKTIYGWDFEKQRVVPVDPYERPQASACFIISVEDSIDDIWQLMAES 210

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVC 449
           A L K+  G+G DW+ +R     +    G+  G + F++V + T   +  GGK R+ A+ 
Sbjct: 211 ARLFKFGSGVGADWSKLRSTKEKLS-GGGRPSGPVSFMRVQDATGATIKSGGKTRRAAIM 269

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT-ANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             L+ WH D+ EF+  +           +     ++  + +     QN   ++   DE  
Sbjct: 270 QTLKVWHPDIMEFVTAKAKEEKKAWALIEQGYDGSFNGEAYSSVAFQNVNQSVRVTDEFM 329

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +          +A   +  +A     KV  +I A  L  K+    +  G P + ++D   
Sbjct: 330 EAV--------LARRKFPLKAV-TTGKVIEEIDAYELLYKVAEGTWICGDPGLQYEDTIQ 380

Query: 569 IRSPQQHVGVVHSSNLCTE 587
                ++ G ++SSN C  
Sbjct: 381 RWHTCKNSGPINSSNPCVT 399


>gi|260889745|ref|ZP_05901008.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860351|gb|EEX74851.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 315

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 137/342 (40%), Gaps = 48/342 (14%)

Query: 583 NLCTEITLNSSSEET---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           +  ++I      +       CNLGS+N+     N      ++    + A+  L  V D  
Sbjct: 4   SEVSDINAYYEEDTIRRGISCNLGSLNIATVMENK-----RIKEATKAAIDSLTMVSDLT 58

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   KK+N    ++GLG M     L    I Y S EA++  +     ++F+++  S
Sbjct: 59  NIDIVPSIKKANDELHSVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERS 118

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKK 751
           +E+A+E+   +  F+ S +  G +    I      + E        +   ++  W  LK+
Sbjct: 119 MEIAKEKGETFKDFEKSEYANGNYFDKYITKEYVPQTEKIKQLFEGIYIPTKEDWANLKE 178

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           +V   G+ N+  MAIAP  + + I   + S+ P    + V+            +L N   
Sbjct: 179 QVMKHGVYNAYRMAIAPNQSTSYIMNSTASVMPVVDTIEVREYGDSTTFYPMPYLTN--- 235

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                       D    + +A++++   +++  S  Q+ +DQ  
Sbjct: 236 ----------------------------DNYFFYKSAYDMNQKNILKLISVIQRHVDQGI 267

Query: 872 SLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           S  LY     S + L  +Y  A  +GLK+ YY R+R AT  E
Sbjct: 268 STILYTKSTDSTRDLARLYIYAHRLGLKSLYYTRTRKATIEE 309


>gi|145638029|ref|ZP_01793660.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
 gi|145268770|gb|EDK08742.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
          Length = 241

 Score =  211 bits (536), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 16/252 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI K+ P+Y  + AR  +  LR++             H +   LY ++  + 
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYG----------HFDPPRLY-DHVKKL 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +      + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VRMEKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L  
Sbjct: 170 QFLYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIE 229

Query: 376 VPDDLYGIFGAL 387
             D L  I    
Sbjct: 230 CDDSLDSINATA 241


>gi|330941360|gb|EGH44212.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 202

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 116/203 (57%), Positives = 144/203 (70%), Gaps = 17/203 (8%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY
Sbjct: 2   APTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKY 61

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           +DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD
Sbjct: 62  YDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLD 121

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP----- 941
             YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P     
Sbjct: 122 VTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEA 179

Query: 942 ----------SSCTSDTECEVCQ 954
                     +    + +CE CQ
Sbjct: 180 APAGPAPVPKACAIDEPDCEACQ 202


>gi|187736452|ref|YP_001878564.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426504|gb|ACD05783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1180

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 124/680 (18%), Positives = 220/680 (32%), Gaps = 156/680 (22%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAF---FMRVAM---------GLALKETEKEKRAVE 341
           +   ++I  D+Y        +E   +F   + R++          G      + E    E
Sbjct: 78  DDNAVKITADKYLFGSEPGSLEYEDSFRNIYDRISNTYTVWGWEEGYFATLEDAEIFNEE 137

Query: 342 FYNLLSSFHFMCSTPTLFNSG--------------------------------------- 362
              +L    +  ++P  FN G                                       
Sbjct: 138 IKAMLVQQIWAPNSPVWFNIGHWEQWRWGRPDLRENYTGHGNKAYHTKGTKNNLKTFMVQ 197

Query: 363 --TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
               +PQ S+CFLT V D +  I   L     +     G+G + + +R     I    G+
Sbjct: 198 STYEYPQCSACFLTEVGDSMEDILDHLTTEGRIFASGSGVGINLSTLRSSKEPIS-GKGR 256

Query: 421 SQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR-THD 478
           S G I F +  +  A A+  GGK R+ A    + + H D+ EF++ +    D  +    +
Sbjct: 257 SSGPISFDRGWDRMAGAIKSGGKTRRAARMVLMFSDHPDIFEFINTKNRQEDIAKVILRE 316

Query: 479 MNTANWIPDLFMKRVTQNAGW----------------TLFSPDEVSDLHD---------- 512
            N    +  +   ++                        F P   + L+           
Sbjct: 317 HNVHVELKQIAETKLVAGTPAEKAAARVILSLPLATRNSFDPHMDALLYGETLSHQNANH 376

Query: 513 ---LYGKEFEIAYEN---YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L G  ++    N   Y R        + +   A  L   M   +++ G P +   D 
Sbjct: 377 SVSLKGDFWQALANNGNTYTRWVTNPAH-IEQTFRAQELLEAMAQSIWDNGEPGVHNNDV 435

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKL 621
            N+ +P + +G + +SN C+E    +++     CNL S N        +     FD D L
Sbjct: 436 INLWNPVKSIGTITTSNPCSEYVFLNNTS----CNLSSFNAYRFLIKGEDGKPVFDADAL 491

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               R A+   D  ++     IE+  +  + +R  G+G      +L  L +PY S E   
Sbjct: 492 THAARLAMVCADLNVERGGFPIEEIAEGTYKYRTTGIGFANVGGSLMALGVPYDSDEGRW 551

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGS--------------------------- 714
           IA +    ++    +AS E+  E G+Y  +  S                           
Sbjct: 552 IASQLCSALTAACWTASAEMGAELGSYVEYPASKKDLLAVLRLHNAAQKLASALPSQKDS 611

Query: 715 ------------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW---------D 747
                                QG+    ++    +      M    R+           D
Sbjct: 612 KTLDDLIENIIANAGGILPEAQGLTASYALHAYLKSFKAPTMMNRERIAPAAKLAEAASD 671

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGV----SQSIDPSYQNLYVKSNMSGDFTVVN 803
              K +K    RN+    +APT TI+   G     + SI+P Y  +  K    G    + 
Sbjct: 672 MWAKVIKATAHRNAFVSVMAPTGTISAPLGCYDEGTTSIEPDYTLVKWKQLAGGGSLKMF 731

Query: 804 SFLVNELKQRDLWDEAMISD 823
           + L  E  +   + E  +++
Sbjct: 732 NRLALEGLRSLGYPEDFVNE 751



 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I P   +      Q +I  A S  + +    S + +      +  +G+K     R+ S  
Sbjct: 863 ISPAGHVLMLGALQPFISGACSKTVNMPVSASVQDIYDSLIMSHELGVKCIAIFRAGSKA 922

Query: 910 SV 911
           + 
Sbjct: 923 NA 924


>gi|196019001|ref|XP_002118908.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
 gi|190577773|gb|EDV18606.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
          Length = 285

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 53/332 (15%)

Query: 629 VRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +R LDNV    ID    ++ KA+ S +  R++GLG+MGF S L    +P  S  A     
Sbjct: 1   MRFLDNVLQDFIDNAPDSMSKARYSAYRERSVGLGVMGFHSFLQSKMVPMESAMAKSWNL 60

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              + I+     AS  +++E+GA                                     
Sbjct: 61  RIFKHINDEVNKASKLISEEKGACP----------------------------------- 85

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVN 803
             +EL  +      R +N  A+APTA+I+ I G +   I+P   N Y + +++G F + N
Sbjct: 86  DAEELGLK-----ERFTNKTAVAPTASISVIAGSTSPGIEPFNSNAYTQKSLTGSFNIRN 140

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L   L+ +D   E + S +  H+GS+ ++E +  D K +  TAFEI+  WLIE A+ R
Sbjct: 141 KYLKKLLQMKDKDTEEIWSSIMNHEGSVSHLEFLSKDEKDVFKTAFEINQQWLIEHAADR 200

Query: 864 QKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN+++     K +L+ ++  AW  G+K+ YY RS+S    +K ++     K
Sbjct: 201 TPYISQAQSLNIFIPADIDKSELNKLHYLAWKKGVKSLYYCRSKSLQRADKVSITDNVDK 260

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   P  +              EC  CQ
Sbjct: 261 HQLKMKLSPVVTKDE-------DKYDECLACQ 285


>gi|289677032|ref|ZP_06497922.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 205

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 145/205 (70%), Gaps = 17/205 (8%)

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 3   ATAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 62

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 63  KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 122

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--- 941
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 123 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 180

Query: 942 ------------SSCTSDTECEVCQ 954
                       +    + +CE CQ
Sbjct: 181 EAAPAGPAPVPKACAIDEPDCEACQ 205


>gi|256371812|ref|YP_003109636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008396|gb|ACU53963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
          Length = 1331

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 10/338 (2%)

Query: 596  ETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            + + CNL SINLLA+   +  FD +    T R  +   D +     +   +  +++  +R
Sbjct: 758  DNSSCNLASINLLAYLDEDGNFDVEGFRHTARVLITAQDILAGNADYPTPRIAETSRAYR 817

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +GLG     + L  L +PY S      A      ++  A   S ELA+  G ++ +   
Sbjct: 818  QLGLGYANLGAMLMALGLPYDSDGGRAYAAAVTALMTGAAYERSAELAERLGPFAGYADD 877

Query: 715  LWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                          LA+V     A+   +R  WD    R   +G+RN+    +APT TI 
Sbjct: 878  AESMLRVLGMHRDALAKVDGAPEAIVEAARASWDMAIARASEVGVRNAQASLLAPTGTIG 937

Query: 774  NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DG 829
             +    +  I+P +  +  K+ + G    + +  V    +   + E  I  +  +     
Sbjct: 938  FLMDCDTTGIEPDFSLVKYKTLVGGGTMKIVNQTVPRALRTLGYPEHEIDQITAYLAEHD 997

Query: 830  SIGNIERIPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKL 885
            SI     +  + + + A A   + I P   +      Q ++  A S  + L   S  + +
Sbjct: 998  SIVGAPGLKPEHEAVFACAVGEYPISPTGHLAMMGAVQPFLSGAISKTVNLPSTSTVEDV 1057

Query: 886  DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +  Y  AW +G+K     R  S      ST    D + 
Sbjct: 1058 EQTYLDAWRLGIKAVALYRDGSKVGQPLSTTHEEDSEA 1095



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 128/371 (34%), Gaps = 42/371 (11%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYG 382
           A G    + E++  A E   LL       ++P  FN G      Q S+CF+ +V D +  
Sbjct: 97  ADGYFADDDERDAFADELRWLLVHQRAAFNSPVWFNIGVEGVPQQASACFILSVDDTMES 156

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  GG
Sbjct: 157 ILNWYHEEGIIFKGGSGAGVNLSTIRSSVEPL-AGGGTASGPVSFMRGADASAGTIKSGG 215

Query: 443 K-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWT 500
           K R+ A    L   H DVEEF+  +       R   +      +          QNA  +
Sbjct: 216 KTRRAAKMVILNVDHPDVEEFVWTKAIEERKARVLAEAGFDMGVDGKDAFSIQYQNANNS 275

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +   DE      +  +E+E+      R    GE  V + + A  L+ ++    +E   P 
Sbjct: 276 VRVTDEFMQAV-VEDREWEL------RAVTTGE--VTKTVRARDLFHQIAEAAWECADPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + F    N      + G ++ SN                C  GS  +  H       +++
Sbjct: 327 LQFDTTINRWHTTPNAGRINGSNP---------------CFPGSARV--HTNKGLIAFEE 369

Query: 621 LASTIRTAVRVLDNVIDIN--CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           L   +      L    D        E+   S+         + G+   +    + + +  
Sbjct: 370 LTRRVLDGEEFLVYTHDSTSPDDPTEQVLLSS----PEAFMVTGYNQVV---KLRFDNGA 422

Query: 679 AVEIA--DESM 687
            +         
Sbjct: 423 ELRCTPGHRIF 433


>gi|114320627|ref|YP_742310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227021|gb|ABI56820.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1095

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 36/361 (9%)

Query: 574  QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
              +    ++ L               C LGS+NL     +      +FD+ + A  +   
Sbjct: 688  PGINTFDANGLHAHNCGEQPLPPYGACLLGSVNLTKFVRDPFTEKARFDWQEYAEVVSVF 747

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             R+LDNV++IN   +++ ++     R  G+G +G  S L +L + Y   E++   ++   
Sbjct: 748  TRMLDNVVEINGLPLDEQRREIERKRRHGMGFLGLGSTLTMLRMKYGEAESLAFTEKVSR 807

Query: 689  FISFHAISASVELAQERGAYSSFKGSL-------WDQGVFPIDSIGLLAEVRDELAMNRT 741
             ++       VELA+E+G       +          +    +D   +  +V+  + + R 
Sbjct: 808  EMALAGWRTGVELAEEKGPAPIMDETYTVDEAMLAKRPEMAVDGYKVGDKVKGRVLLARY 867

Query: 742  SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
            S           EL + +   G R S+  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 868  SHYMQRVAEVDAELVEAIAEKGARFSHHTSIAPTGTISLSLANNASNGIEPSFAHHYFRN 927

Query: 794  NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +         V+ F    L  R   D   +           + +    +L     TA  
Sbjct: 928  VIREGRKSKEKVDVFSFELLAYRHFIDPEAVP----------STDPETRNLPDYFITADS 977

Query: 851  IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + P   ++  +  QKW+D + S   N+  D P  +    IYR A+  GLK     R    
Sbjct: 978  VTPKQHVDIQAAAQKWVDSSISKTANVPTDYPY-EDFKDIYRYAYQQGLKGCTTFRFNPE 1036

Query: 909  T 909
             
Sbjct: 1037 A 1037



 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 120/317 (37%), Gaps = 23/317 (7%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           D   +     I   +Y L     ++  E     + RVA  LA  E  K+ R   +   L 
Sbjct: 16  DIPLQSASADIWDKKYRLKSKDGQVIDETVDHTWQRVARALAEVEKTKKLREHWYERFLW 75

Query: 348 SFH--FMCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +     + +     N+G          ++     T+ D +  I   + E  +  K   G+
Sbjct: 76  ALRRGAIPAGRITSNAGAWAHKPATSTINCTVSGTIQDSMDDILQKVHEAGLTLKAGCGI 135

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV 
Sbjct: 136 GYEFSTLRPRGAYVSGAGAYTSGSLSFMDIYDRMCFTVSSAGGRRGAQMATFDVGHPDVL 195

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH----DLYGK 516
           +F+  ++  G    R    N +  I + FM+ V  +A W L  P    +      DL   
Sbjct: 196 DFIRAKREDG----RLRQFNLSLLITEEFMQAVEDDAQWPLAFPLTKHEAETDNIDLTDS 251

Query: 517 EFEIAYENYERQADRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           E  I  E    +    +       +++R + A  LW  ++T  ++   P     D  N  
Sbjct: 252 EQVIWREWPTTEPYISDEQGLVACRIYRTVKARRLWDMIMTSTYDFAEPGFILIDRVNEM 311

Query: 571 SPQQHVGVVHSSNLCTE 587
           +       + ++N C  
Sbjct: 312 NNNWFCEDIRATNPCVT 328


>gi|209967330|ref|YP_002300245.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
 gi|209960796|gb|ACJ01433.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
          Length = 1191

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 132/344 (38%), Gaps = 44/344 (12%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
                  ++ L               C LGS+NL A   +      + D ++LA  +  A
Sbjct: 643 PGANAFEANGLVVHNCGEQPLPPYGACLLGSVNLAALVRDPFTPAARLDREELARVVPLA 702

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR++DNV+D++   +E  +      R IGLG+ G   AL L  + Y S   V + +E + 
Sbjct: 703 VRMMDNVVDVSRFPLEAQEAEAQAKRRIGLGVTGLADALILCGVRYGSEAGVRLTEEWLR 762

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A   S  LA E+GA+  F                     R+        R    +
Sbjct: 763 AIQVAAYRTSAALAAEKGAFPLFD--------------------REAFLERPMVRALPPD 802

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +++ +   G+RN+   +IAPT TI+   G  S  I+P +   Y ++ +  D +      V
Sbjct: 803 VREAIAAQGVRNALVTSIAPTGTISLFAGNVSSGIEPVFAYEYQRAVLMPDGSRRTET-V 861

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L  R L+ E M  D    D                   A  ++P   +   +  Q+ +
Sbjct: 862 QDLAYR-LYRERMGPDAPLTDA---------------FVDAQSLEPAAHLVMQAAAQRHV 905

Query: 868 DQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           D A S  +        +    +YRQA+ +G K     R  + T 
Sbjct: 906 DSAISKTINCPADLPFEAFKDVYRQAYELGCKGCTTYRPNAVTG 949



 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           QI   +Y L   +G+ ++      + RVA  LA  E +       F + L  F F+ +  
Sbjct: 24  QIWDMKYRLKAPDGAPVDATVADTWTRVARALAAPERDPAAWEERFRSALEGFRFLPAGR 83

Query: 357 TLFNSGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GTR    L +CF + TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA +
Sbjct: 84  ILAGAGTRRTVTLFNCFVMGTVPDDMGGIFAHLREAALTLQQGGGIGYDFSTLRPKGAPV 143

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G    + G + F+ V +     +   G R+GA+ A L   H D+E F+D ++  G    
Sbjct: 144 AGVGADASGPVSFMDVWDSMCRTIMSAGSRRGAMMATLRCDHPDIELFIDAKREPG---- 199

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R  + N +    D FM  V ++  W L                               + 
Sbjct: 200 RLRNFNLSVLATDDFMAAVREDRPWPLRF-----------------------------DG 230

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +VFR + A ALW +++   ++   P + F D  N ++   +   + ++N C  
Sbjct: 231 RVFRTVPARALWDRIMRATYDYAEPGVIFIDRINEQNNLSYCETISATNPCVT 283


>gi|120609366|ref|YP_969044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax citrulli AAC00-1]
 gi|120587830|gb|ABM31270.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax citrulli AAC00-1]
          Length = 1226

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 133/347 (38%), Gaps = 48/347 (13%)

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTA 628
                ++ LC              C+LG I L               FD+D  A+++ T 
Sbjct: 677 CHAFDANGLCVHNCGEQPLPSYGCCDLGPIILPRFVRHPFGFAGEPAFDFDAFAASVATQ 736

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LDNV+D+    + + +  +   R IG+G  G  + L +L + Y +     +A    E
Sbjct: 737 VRALDNVLDVTFWPLPQQRAESAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAE 796

Query: 689 FISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            +   A +ASVELA+E+G +  F  + +   G F                    SRLP  
Sbjct: 797 CMRDAAYAASVELAKEKGVFPKFDAAGYLAPGTF-------------------ASRLP-A 836

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            L++ ++T G+RNS+ ++IAPT T++       S  I+P +   Y +     D +  + +
Sbjct: 837 ALQEAIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGST-SEY 895

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            V +   R               G++G        L     +A ++     I      Q 
Sbjct: 896 AVEDHAWRLY-------------GALGGDVNA---LPDYFVSALQMPAAGHIAMMEAVQP 939

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +ID A S  + +      +    +Y  AW   LK     R  +    
Sbjct: 940 FIDTAISKTVNMPADYPYEDFKNLYLHAWRARLKGLATYRPNAILGA 986



 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 29/302 (9%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL--LSSFHFMC 353
           + L +L ++Y            +  + RVA  LA  E  + + A+E   L  L +     
Sbjct: 22  ISLDVLREKYLKPGEAD----AETLYRRVARALASVEAPEVREAIEARFLANLRAGAIGA 77

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G+        + AL+E A   +  GG+G D++
Sbjct: 78  GRIMSAAGTAIQATLINCFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDFS 137

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 138 RIRPRGAEVKGTASMASGPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFITA 197

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD F++ V  +A W L  P           +      E  
Sbjct: 198 KRTPG----RWNNFNVSVGVPDAFVQAVLDDAPWELVHP----------ARPGAALREEG 243

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ   G+  V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 244 ARQRADGQ-WVYRTLPARELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNPC 302

Query: 586 TE 587
             
Sbjct: 303 VT 304


>gi|326315454|ref|YP_004233126.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372290|gb|ADX44559.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1226

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 142/385 (36%), Gaps = 50/385 (12%)

Query: 576  VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-------ANNQFDYDKLASTIRTA 628
                 ++ L               C+LG I L               FD++  A+++ T 
Sbjct: 677  CHAFDANGLYVHNCGEQPLPSYGCCDLGPIILPRFVRHPFGFAGEPAFDFEAFAASVATQ 736

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            VR LDNV+D+    + + +  +   R IG+G  G  + L +L + Y +     +A    E
Sbjct: 737  VRALDNVLDVTFWPLPQQRAESAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAE 796

Query: 689  FISFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
             +   A +ASVELA+E+G +  F  + +   G F                    SRLP  
Sbjct: 797  CMRDAAYAASVELAKEKGVFPKFDAAGYLSPGTF-------------------ASRLP-A 836

Query: 748  ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
             L++ ++T G+RNS+ ++IAPT T++       S  I+P +   Y +     D +  + +
Sbjct: 837  ALQEAIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGST-SEY 895

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
             V +   R           +   G +       D L     +A ++     I      Q 
Sbjct: 896  AVEDHAWRLY---------RALGGDV-------DALPDYFVSALQMPAAGHIAMMEAVQP 939

Query: 866  WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRS--ATSVEKSTLKGVDGK 922
            +ID A S  + +      +    +Y  AW   LK     R  +     +E        G 
Sbjct: 940  FIDTAISKTVNVPVDYPYEDFKNLYLHAWRARLKGLATYRPNAILGAVLEAPAAAPETGA 999

Query: 923  LNAVPVTDPNSSTHSLGIPSSCTSD 947
              A    D + S     + +S    
Sbjct: 1000 ATAAAAHDASESAEGPAVQASAMPP 1024



 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 29/302 (9%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL--LSSFHFMC 353
           + L +L ++Y            +  + RVA  LA  E  + + A+E   L  L +     
Sbjct: 22  ISLDVLREKYLKPGEAD----AETLYRRVARALASVEAPEVREAIEARFLANLRAGAIGA 77

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWT 405
                         L +CF+  V D + G+        + AL+E A   +  GG+G D++
Sbjct: 78  GRIMSAAGTDIQATLINCFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDFS 137

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+  
Sbjct: 138 RIRPRGAEVKGTASMASGPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFITA 197

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G    R ++ N +  +PD F++ V  +A W L  P           +      E  
Sbjct: 198 KRTPG----RWNNFNVSVGVPDAFVQAVLDDAPWELVHP----------ARPGAALREEG 243

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            RQ   G+  V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N C
Sbjct: 244 ARQRADGQ-WVYRTLPARELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNPC 302

Query: 586 TE 587
             
Sbjct: 303 VT 304


>gi|46309417|ref|YP_006307.1| ORF37 [Agrotis segetum granulovirus]
 gi|46200634|gb|AAS82701.1| ORF37 [Agrotis segetum granulovirus]
          Length = 615

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 126/650 (19%), Positives = 250/650 (38%), Gaps = 98/650 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           R    +  G  I+ +R  L      +E P+ F  R++ G+   + ++EK+      LLSS
Sbjct: 8   RLNNLQEFGRIIMKERMLLDD----VETPEEFCQRISRGMVKLD-DEEKKIAHATALLSS 62

Query: 349 FHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGI--FGALQENAMLAKYSGGLGNDW 404
              + S+    +   +      S+C LT              L   A +A    G+G   
Sbjct: 63  VSIIPSSALCQHLNLQRNDTTPSACHLTVFSHSYEAFSKLNELDRIAKMAIMGTGVGVGG 122

Query: 405 TPVRGLGAHIH-GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
             +R  G+++          +  +L    + A  +N    RK  V  +L   HI     L
Sbjct: 123 DYLRYKGSNVAGELKNSFVEICQYL----NAATTLN-VSARKSRVAVFLSLHHICSMICL 177

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSPDEVSD---LHDLYGKEF 518
            LR+      R T ++     IP+ FM+  R  +NA W  F  +   +   L+D YG+E+
Sbjct: 178 TLRQQNA---RVTSNIFYGVMIPNFFMEMQRKDKNAMWYFFDGNTTLEGLSLNDCYGEEY 234

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E     Y R  ++      +K+ A  +  ++++ L E G P++ ++D  N+ +  + +G 
Sbjct: 235 ESL---YWRMVEKKLY--VKKMYATQVLGELISCLTENGFPYVVWRDHVNMFNNHRDLGT 289

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD------YDKLAS--------- 623
           + + NLCTEI  ++ S+ +++C L ++N+ A+  +           ++LA          
Sbjct: 290 IQTLNLCTEICQHAGSDSSSMCTLMTVNIAAYCEDYPLCKMYEEIVEELAEYGLHQCCPQ 349

Query: 624 -----TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP---YA 675
                  R  +             + +      + R +G+   G   A+++L      Y 
Sbjct: 350 FDETNEARLLMHCFTASYTST-FLLNRLLGDKTSRRELGVTPTGLFDAVYILCGRDAAYN 408

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRD 734
               +  +    E++    + +S+   ++      +F  S + +G+F  D   +      
Sbjct: 409 DAM-IHYSALVAEYMYIGCVLSSIVYNRKFNVICVNFSKSEFAKGLFQFDLRNVTP---- 463

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID-PSYQNLYVKS 793
                 +  L W+ ++  +K  GM NS   A APTAT + +  V++S+  P    +    
Sbjct: 464 ------SLSLLWNRIRPFMKK-GMANSMLTAQAPTATTSLLTNVTESVQFPMSGAVQTTK 516

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N          F + +  + D+     ++  K                            
Sbjct: 517 NSGTGRFANIPFFLYKSNETDIGFNRPVTIAK---------------------------- 548

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
              ++  ++   ++DQ+QS+ +     + + +  I R  +   LKT  YY
Sbjct: 549 --QVQVFAKMAPYVDQSQSVIINCSS-TYEDVFRILRYTYDNKLKTALYY 595


>gi|254489544|ref|ZP_05102747.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214042051|gb|EEB82691.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 342

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 16/339 (4%)

Query: 215 NYAKVTARFLLE----KLRREV---LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +Y  + A   L      +R +        Y       +        E     ++EG    
Sbjct: 2   DYHALNAMLNLYDSQGHIRFDADRMAARQYFLQHVNQNTVFFHSLDEKLSYLVDEGYYEA 61

Query: 268 LLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRV 324
            + +       ++L  +  + + F F  +LG    Y  Y L        +E  +   +  
Sbjct: 62  AVLDG-YPRAFLHLIWEAAFAQKFRFPTFLGAFKYYTSYTLKTRDGNRFLERYEDRVVMT 120

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGI 383
           A+ LA  +   + +A+ F + + S  F  +TPT  N+G +   +L SCFL  + D++  I
Sbjct: 121 ALTLARGD---QVQAMAFMHEILSGRFQPATPTFLNAGKQSRGELISCFLLRLEDNMESI 177

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
              +     L+K  GG+    T +R  GA I G   +S GVIP +K+  D+    NQ G 
Sbjct: 178 GRGINSALQLSKRGGGVALMLTNIREQGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGA 237

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFS
Sbjct: 238 RQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFS 297

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           P +V  ++ L   +  +  E Y    D           A
Sbjct: 298 PHDVERVYGLPFSDISVT-EKYAEMVDNKTHPQKEDKRA 335


>gi|21686784|ref|NP_663284.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
 gi|21637100|gb|AAM70317.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
          Length = 609

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 133/645 (20%), Positives = 243/645 (37%), Gaps = 101/645 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           R    +  G  +L +R  +  N    E  + F +R  MG  +   + EK++    +LLSS
Sbjct: 2   RLKNLQTNGQIVLRER-MMKDN----EDVEQFTIR--MGKQMTNGD-EKKSRMVQHLLSS 53

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              + S+             ++CFL       D+      +   + +     G+G     
Sbjct: 54  ASMIPSSAVCQFYNGIKETPNACFLYVFNSNHDVDVKMKEMYNISKIVIKGTGVGVGADF 113

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN-QGGKRKGAVCAYLETWHIDVEEFLDL 465
           +R   +       K +    F+++      ++N     RK  +  Y+   +I+    L L
Sbjct: 114 LRSSSS-------KGEFQNNFVELCKYLNQSINLSATIRKSRMAVYVSLHNINSYLCLSL 166

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPD---EVSDLHDLYGKEFEI 520
           RK        T ++     +P++FM        A W  F  D   +   L++ YG+++E 
Sbjct: 167 RKQN---NLITPNLFYGLMVPNMFMTMFEHEPTAWWYFFDGDYTLDGESLNECYGEKYEK 223

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y+   R   +GE    ++I    L  ++++ + E G P+I ++D  N+ + Q+ +G V 
Sbjct: 224 LYK---RMVQKGEY--RKRIMVRELIGELVSCITENGFPYIVWRDYINLYNNQRELGTVQ 278

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV--IDI 638
           + NLC EI   S++   + C L ++N+ A   N   D+ ++   +      +D +  +D 
Sbjct: 279 TLNLCAEICQYSTNSFDSHCTLMTLNVAAFCENYPQDWAEIRQDLDCCKIPIDCLPPLDN 338

Query: 639 NC---HTIEKAKKSN---------HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE- 685
           N    H    A  S             R IG+   G   A+    I Y    A   A E 
Sbjct: 339 NNMLAHCFYTAYMSTFVLNFMLGDSKRREIGVSPTGLFDAI---CIKYGVEAAYNYAMEK 395

Query: 686 ----SMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                 E+I    I ASV   +       +F  S++ +G++  D             +  
Sbjct: 396 YAGLVSEYIYLGCILASVVFNRRYNVTCVNFSRSMYARGLYQFDLRH----------VEP 445

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID-PSYQNLYVKSNMSGDF 799
                W+ L+  +   GM NS   A APTAT + I  V++S+  P    +  K++ SG F
Sbjct: 446 VLMQQWNSLRPYMMK-GMANSMVTAQAPTATTSLITNVTESVQFPLPGVITTKNSESGRF 504

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                ++                       ++  +  I             +     +  
Sbjct: 505 ADTPFYM-----------------------TVLGVHNIHKH----------VSVRQQVMI 531

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
            +    +IDQ QS+ +     + + +  +Y   +   LKT  YYL
Sbjct: 532 YANCAPYIDQTQSVIINCKPENDETMKVLY-YTYTQKLKTAIYYL 575


>gi|258624606|ref|ZP_05719544.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
 gi|258583153|gb|EEW07964.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
          Length = 267

 Score =  208 bits (528), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 40/283 (14%)

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                ++   +K N    AIGLG M     L    I Y S E ++  +     I+FH + 
Sbjct: 1   MSQIDSVPSVRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGIDFTNCYFAAIAFHCLR 60

Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWD 747
           AS ++A+E +  +  F+ S +  G +    +         ++  + +  A+   ++  W 
Sbjct: 61  ASNQIAREKQQTFHDFERSRYASGEYFTPYLQESFAPKTPVVNALFERFAVELPTQEDWQ 120

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++               
Sbjct: 121 QLKEAVMRDGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRK-------------- 166

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                     E  +  + Y          + +D    +  A+EI P  +I++ +   + +
Sbjct: 167 ----------EGQVGRVYYPA------PYMTNDNLNYYQDAYEIGPYKIIDTYAAATRHV 210

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           DQ  SL L+     + + ++     AW  G+KT YY+R R   
Sbjct: 211 DQGLSLTLFFPASATTRDINKAQIYAWKKGIKTLYYVRLRQTA 253


>gi|218459308|ref|ZP_03499399.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 302

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 31/308 (10%)

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R   ++    +PD+  +    N    LFSP +V  ++ +   E  +  E Y        
Sbjct: 1   IRIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVT-EKYREMVADAR 59

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I   +KI A   ++ +  + FE+G+P+I F+D  N  +     G +  SNLC+EI   S 
Sbjct: 60  ISK-KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVSE 116

Query: 594 SEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-C 640
           + E               CNLGS+N+ A       D      TI T++R L  V D++  
Sbjct: 117 ASEYNDDLSYKHLGKDISCNLGSLNIAA-----AMDSADFGKTIETSIRALTAVSDMSHI 171

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            ++   +K N    AIGLG M     L    I Y S E V+  +     +++HAI AS  
Sbjct: 172 ASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNL 231

Query: 701 LAQERGA-YSSFKGSLWDQGVFPIDSIGLLAE--------VRDELAMNRTSRLPWDELKK 751
           LA ERG  +  F+ S +  G +         +        + D+  ++  ++  W  LK 
Sbjct: 232 LAVERGTRFKGFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQDDWASLKT 291

Query: 752 RVKTIGMR 759
            V T G+ 
Sbjct: 292 AVMTSGLY 299


>gi|297622329|ref|YP_003703763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
 gi|297163509|gb|ADI13220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
          Length = 1236

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 145/401 (36%), Gaps = 65/401 (16%)

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---QFDY 618
             F             G++  ++ C EI L         C+LG+INL A+        F +
Sbjct: 732  VFDVTVEHVHAFDANGLL--AHNCGEIPLFPGEP----CDLGAINLAAYVTGEGLENFAW 785

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            D     +RT VR LDNV+++N   +E  +  +   R +GLG+MG   AL  L   Y + E
Sbjct: 786  DAFREDVRTCVRFLDNVLEVNRFALEDNRAMSMKLRRLGLGIMGLADALIKLGYRYDTDE 845

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
                 +  +  +   A  AS  LA+ERGA+  F  S                        
Sbjct: 846  GRAAVEAIITAMRESATEASRALAEERGAFPEFGKSS----------------------- 882

Query: 739  NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                                RN   + +APT T + + GVS  ++P +     +      
Sbjct: 883  ---------------LKTPRRNVALLTVAPTGTTSMLMGVSSGVEPIFAPFIYRKIGDTY 927

Query: 799  FTVVNSFLVNELKQ---------RDLWDEA-MISDLKYHDGSIGNIERIPDDLKKIHATA 848
              ++       L+Q            WD   ++  ++ + GS+  +  IP+ +K++   A
Sbjct: 928  AALIAPLFKEMLEQHPPHPDYEHEGAWDWERVVEAVQANHGSVQGLAFIPEAVKRVLVCA 987

Query: 849  FEIDPMWLIESASRRQKWID-------QAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTT 900
             +I P   ++     Q+  D        + S  +   ++ +   +   Y  A+ +G K  
Sbjct: 988  HDIAPEDHVKMQGAVQRAFDAGGEMVANSISKTINLPNKATVADVYSAYSMAFDVGCKGI 1047

Query: 901  YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
               R  S      ST KG   K +A     P       G P
Sbjct: 1048 TVYRDGSRQFQVLSTSKGASEKQDAATPPAPARPERLPGEP 1088



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 72/290 (24%)

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           + ++    +  K     Y  L    +                 S+  +T V D +  I+ 
Sbjct: 146 LTISPAHPDYAKVKTGTYMDLVHGKYTTKGYRCAQFLEPDEVPSALHVTAVGDSVESIWQ 205

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHG-------------------------TNGK 420
           +  E+         +  D + +R  G  + G                             
Sbjct: 206 SAGESVTKLLAGEDVLLDLSKLRAEGTPVKGSGGNSSGPSSFAVEVFDNFALWASLGGAA 265

Query: 421 SQGVIPFLK-VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHD 478
             G +  L+ +   T   + QGG R+GA  A L   H D+E+F+  +  + +        
Sbjct: 266 HAGPVATLRYIFAPTLRVIRQGGTRRGAGMATLSVTHPDIEDFITCKDLSREQTEGDIST 325

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+R                                             R
Sbjct: 326 FNISVLVSDAFMERAK-------------------------------------------R 342

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTE 587
            +S+  L + +    ++TG P + F D  N  +P +  +G + ++N C  
Sbjct: 343 TLSSGVL-QDIADHAWQTGEPGLIFIDRINAFNPMRESLGEIKATNPCVT 391



 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 10/125 (8%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSF 349
            F+   + I   +YF   +   +      F RVA  +A  E E E+   E  FY+L+ S 
Sbjct: 14  RFDEHAVAIAKRQYFQPGDEDVL----GMFRRVAAWVASPEAEGERSRYEARFYDLMVSK 69

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL----QENAMLAKYSGGLGNDWT 405
            F      L  + T H  + +CF+     ++ G    +     + A++ K  GG G    
Sbjct: 70  RFCPGGRVLAGAATGHGNVLNCFVQDGSPEVVGTDAWVIRLATKLALVTKVGGGNGLCLD 129

Query: 406 PVRGL 410
           P+   
Sbjct: 130 PLPPK 134


>gi|88813364|ref|ZP_01128602.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
 gi|88789422|gb|EAR20551.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
          Length = 1540

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/417 (21%), Positives = 163/417 (39%), Gaps = 45/417 (10%)

Query: 519  EIAYENYERQADRGEIKVFRKISAVALW-RKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            EI +    + A   +    R +     +  ++ ++ +    P   +    + ++     G
Sbjct: 1085 EIGFLLDYKNARYRQWSKGRVLRKTQRFASRIASITYAGREP--VYDTTQSDKNTVIFNG 1142

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVL 632
            +V      T         E   C LGS+NL             FD+++    +    R+L
Sbjct: 1143 LV------TGQCGEQPLPEFGACLLGSVNLTKFVREPFTERAWFDWEEYRRVVAIFTRML 1196

Query: 633  DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            DNV++IN   +E+ ++     R  G+G +G  SAL +L + Y +P+++   + + + ++ 
Sbjct: 1197 DNVVEINGLPLERQREEILRKRRHGMGFLGLGSALTMLRMQYGAPDSLAFTERAAKEMAL 1256

Query: 693  HAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
                A +ELA+E+G               L  +     D   +  +V+  +   R SR  
Sbjct: 1257 AGWRAGLELAEEKGPAPIMDEEFTLTEALLAKRPEMRKDGYRVGQKVKGRVLWARYSRYM 1316

Query: 746  W------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSG 797
                    EL +R+   G R ++  +IAPT TI+       S  I+PS+ + Y ++ +  
Sbjct: 1317 QRIAEADPELVERLAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYFRNVIRA 1376

Query: 798  DFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                   ++ +    L  R   D   +  +          +    +L     TA +I P 
Sbjct: 1377 GRKSKEKIDVYSFELLAYRHFVDPQALPSM----------DPQTRNLPDYFITADDITPQ 1426

Query: 855  WLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
              ++  +  QKWID + S   N+  D P  +    IYR A+  GLK     R     
Sbjct: 1427 QHVDIQAAAQKWIDSSISKTANVPTDYPY-EDFKGIYRYAYQQGLKGCTTFRFNPEA 1482



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 14/209 (6%)

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           EN ++  ++ G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA 
Sbjct: 573 ENGLMVIHNCGIGYEFSTLRPKGAYVCGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQ 632

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---- 504
            A  +  H DV +F+  ++  G    R    N +  I D FMK V +   W L  P    
Sbjct: 633 MATFDVGHPDVLDFIRAKREAG----RLRQFNLSLLITDEFMKAVERGTDWPLAFPLSAQ 688

Query: 505 ------DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                  ++ D   +  +E+        R+      ++FR+I A  +W  ++T  ++   
Sbjct: 689 EASVDGIDLDDPEQVVWREWPSPQTYVTRKDGLVACRIFRRIKAQRIWDMIMTATYDYAE 748

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           P     D  N  +       + ++N C  
Sbjct: 749 PGFILIDRVNELNNNWFCEEIRATNPCVT 777



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           D   +     I   +Y L     +I  E   A F RVA  LA  E   E+RA  +   + 
Sbjct: 19  DIPLQPASQDIWDTKYRLKTKAGQILDETLGATFQRVARALADIEQTPEQRAQWYEKFIW 78

Query: 348 SFHF--MCSTPTLFNSGT-----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +     + +   + N+G          ++     T+ D +  I G + E  +  K     
Sbjct: 79  ALRHGAIPAGRIISNAGAWAHKPATSTINCTVSATIEDSMDDILGKVHEAGLTLKAGCVA 138

Query: 401 GND 403
              
Sbjct: 139 ATS 141


>gi|213583560|ref|ZP_03365386.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 16/245 (6%)

Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PN 215
            N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I ++  LI ++ P+
Sbjct: 1   INLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPD 60

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  + AR  +  LR++               E   LY  +  + +E G     L E   +
Sbjct: 61  YQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKMVELGKYDNHLLEDYTE 109

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKET 333
            +   + + + ++RD  F Y  ++ L  +Y +   + G   E  Q  ++ V   L     
Sbjct: 110 EEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVVACLFSNYP 169

Query: 334 EKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
            + +      FY+ +S+F     TP +    T   Q SSC L    D L  I        
Sbjct: 170 RETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIV 229

Query: 392 MLAKY 396
                
Sbjct: 230 KYVSQ 234


>gi|254226425|ref|ZP_04920012.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
 gi|125621047|gb|EAZ49394.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
          Length = 232

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 16/224 (7%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +  +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+  
Sbjct: 1   MNQQLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I S+  LI +E P+Y  + AR  +  LR++     Y+ P    H            + 
Sbjct: 61  TIIKSAADLISEETPDYQYLAARLAVFHLRKKAYGQ-YEPPTLLAH----------VTKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF+   + G   E  
Sbjct: 110 VEKGKYDKHLLEDYTSEELELMEQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLF 359
           Q  ++ VA  L  K  ++ +      FY+  S+F     TP + 
Sbjct: 170 QFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMS 213


>gi|14602364|ref|NP_148911.1| ORF127 RR1 [Cydia pomonella granulovirus]
 gi|14591882|gb|AAK70787.1|U53466_127 ORF127 RR1 [Cydia pomonella granulovirus]
          Length = 624

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 130/615 (21%), Positives = 230/615 (37%), Gaps = 82/615 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R++  L      K   AV       S     S    FN+G   P     F+ 
Sbjct: 27  ESPDQFVHRMSRLLTNNHPTKSD-AVAHLLSSVSLIPSSSLCHHFNTGDGIPSACCLFVF 85

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +   ++   F  L   A +A    G+G     ++           ++   + F K  N  
Sbjct: 86  SKDHNVDAKFEELTRIARVAIKGTGVGIGADSLKNKSTTRAPGELRNT-YVDFCKSLNHL 144

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
                    R+  V  Y+   +    E L LR+       +T ++     +PDLF+++  
Sbjct: 145 INL--SVTVRQSRVAVYVSLHNTTAYESLFLRQTG---NIQTENIFYGIMVPDLFVRKQK 199

Query: 495 QNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +   W  F  D   +   L+D YG+E+E     YE    RG     + ++   LW +++ 
Sbjct: 200 EGGVWHFFDNDAQVDGKSLNDCYGEEYERL---YEEMVRRGIQ--IKSVNVWELWGEIVN 254

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----TAVCNLGSINL 607
            L   G+P+I ++D  N  + QQ +GVV + NLC E+  +++       T++C L ++N+
Sbjct: 255 CLATNGYPYIVWRDTVNKYNNQQALGVVKTLNLCAEVCQHATDSTVDTNTSLCTLMTLNV 314

Query: 608 LAHFANNQFDYDKLASTIRTAVR--------VLDNVIDINCH------TIEKAKKSNHTH 653
            A   +    +  +   +R              + ++D   +       +          
Sbjct: 315 AAFCEDYTQHWHLIYDDLRQCQIPEQCIPPLGENKILDHCFYGGYMSTFVLNCVLGESKR 374

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAV--EIADESMEFISFHAISASVELAQERGA-YSS 710
           R IG+   G   ALH+++   A+ E    + +    E+I    +  SV   +  G    +
Sbjct: 375 REIGVSPTGLFDALHIMYGAAATYEYAMDDYSARVAEYIYLGCVVGSVVYNRLYGVECVN 434

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+ S + +GVF  D  G+            +  L W  ++      GM NS     APTA
Sbjct: 435 FRASRFSEGVFQFDLRGVTP----------SLTLQWACIRPHAMR-GMANSMLTTQAPTA 483

Query: 771 TIANICGVSQSI-DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           T + I  V++S+  P    +  K++ +G F  +                       Y   
Sbjct: 484 TTSQITNVTESVQYPLPGRITTKNSETGRFADLP---------------------FYAHF 522

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           +     R P            + P+  I+  +    ++DQ+QS  +Y  EP   ++  + 
Sbjct: 523 TNQPPSRHP-----------HVSPLRQIKVYANTAPYVDQSQSTIIYC-EPKNDEISKVL 570

Query: 890 RQAWLMGLKT-TYYL 903
                  LKT  YYL
Sbjct: 571 VYTHKAQLKTGVYYL 585


>gi|110668757|ref|YP_658568.1| ribonucleoside-diphosphate reductase alpha subunit
            (intein-containing) [Haloquadratum walsbyi DSM 16790]
 gi|109626504|emb|CAJ52966.1| ribonucleoside-diphosphate reductase alpha subunit
            (intein-containing) [Haloquadratum walsbyi DSM 16790]
          Length = 1909

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/465 (20%), Positives = 162/465 (34%), Gaps = 92/465 (19%)

Query: 394  AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    + 
Sbjct: 608  HNSGGGMGYAFWKLRPYGDSVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMR 667

Query: 454  TWHIDVEEFLDLRKNTG------------------------------DDRRR-------- 475
              H DV +F+  +                                  D+  R        
Sbjct: 668  ISHPDVIQFIHAKNKDVSLAHSLRLNDPDDFTHTSFADALEEARELIDEEGRVPEHLRNA 727

Query: 476  ----THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                  + N +  + D FM+ +  +  +T  +P    D H    +  E  YE ++   + 
Sbjct: 728  VEGHLSNFNISVGVTDEFMEALFADEEFTFTNPRT-EDPHIATPETKE-LYELHD-LGEH 784

Query: 532  GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
             E+     + A  LW  +++   E G P + + +  N               L T     
Sbjct: 785  VEVGEELSVPAEELWDHIVSGAHENGEPGVIYLERVNKEHSFDVEKHSEHEILATNPCGE 844

Query: 592  SSSEETAVCNLGSINLLAHFANNQFDY----------------------------DKLAS 623
               EE   CNLG INL      +  D+                            +    
Sbjct: 845  QPLEEYEACNLGHINLSTLADKDAPDWRVWYDNNGDAYNNLDDAAEAFIYEAIDMNAFNR 904

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             I +  R L+NV+ ++   +++ + +    R IGLG+MG       + + Y S EA  IA
Sbjct: 905  RIESGTRFLENVVTMSDFPVDEIEATVRDMRKIGLGIMGLAQLYIQIGVRYGSQEANAIA 964

Query: 684  DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT-S 742
            ++ M  I+  +  AS ELA+ERG ++ +  S +              E R+    +    
Sbjct: 965  EQLMTHINHESKWASHELAKERGTFNDWTESKYANPT----------EYREWFEHHTGLD 1014

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTA--TIANICGVSQSIDPS 785
               W++         +RN N   IAPT      ++    + + P 
Sbjct: 1015 ASEWED------GFLIRNHNTTTIAPTGCVEENSLVSTDEGLRPI 1053



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 11/156 (7%)

Query: 771  TIANICGVSQSIDPSYQNLYVKSNMS---GDFTVV--NSFLVNELKQRDLWDEAMISDLK 825
            T + I   +   +P Y   Y K+      GD  +V  + + +  L+Q D+  EA+  + +
Sbjct: 1475 TTSMIGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYFLRVLEQNDIDVEAVKQEAQ 1534

Query: 826  YHDGS-----IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                +     +  ++ +P  + ++     ++            Q+ ID A S        
Sbjct: 1535 EQMANNDFDGVDGLDTVPKAIGELFVVTSDLSGKDHAGVQCACQEGIDSAISKTCNFPSS 1594

Query: 880  PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             + + +D +YR  +  G K     R  + +    +T
Sbjct: 1595 ATKEDMDEVYRYIYQNGGKGVTVYRDGTRSKQVLTT 1630



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           A EF +L+S   FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + + 
Sbjct: 145 ADEFEDLMSRLSFMPNSPTLMNAGDELQQLSACFVDSPSDDISDIHQTAKEAAEVFQC 202


>gi|15078798|ref|NP_149548.1| 085L [Invertebrate iridescent virus 6]
 gi|82013365|sp|O55716|RIR1_IIV6 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit;
           Contains: RecName: Full=IIV-6 RIR1 intein
 gi|2738400|gb|AAB94427.1| 085L [Invertebrate iridescent virus 6]
          Length = 959

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 188/471 (39%), Gaps = 73/471 (15%)

Query: 456 HIDVEE---FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLH 511
           H+D  +    L +         + HD            ++       W LF     S L+
Sbjct: 492 HLDFLKRIQLLLIGMGVTSKITKLHDEKITTMPDGKGGQKPYSCKPIWRLFISS--SGLY 549

Query: 512 DLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            L  + FE     +E RQ  R   +    +               TG       D     
Sbjct: 550 HLSEQGFETRRLKWEPRQPQRNAERFVEVLKVNK-----------TGRV----DDTYCFT 594

Query: 571 SPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            P  H GV +   +  C+EI L + S  TAVC L S+NL  +      D   +   +   
Sbjct: 595 EPINHAGVFNGILTGQCSEIILPTDSTRTAVCCLSSLNLEYYDEWKDNDL-FIKDVMEML 653

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
              L   I+    TI +A  S    R+IG+G++GF S L   +I + S EA ++  +   
Sbjct: 654 DNALTIFIEKAPPTISRAVNSAKKERSIGIGVLGFHSFLQQKNISFESDEAAKLNIDIFT 713

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +     + ++ L   RG+    +G+                                  
Sbjct: 714 KLRSKIDTFNLVLGSLRGSPEDAEGT---------------------------------- 739

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                   G R    MA+APTAT + I G +  S++P   N Y +  +SG F   N +L 
Sbjct: 740 --------GRRFCCTMAVAPTATSSIIMGNTSPSVEPFRANAYRQDTLSGSFLNKNRYLS 791

Query: 808 NELKQRDLWDE--AMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESASRR 863
             L QR    E   + S++  + GS+  +    + +  K++  TAFEI+  W+I+ A+ R
Sbjct: 792 RILSQRLNVKEINEVWSNIVSNGGSVQQLPNNLLSEQEKQVFKTAFEINQKWVIKHAADR 851

Query: 864 QKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           QK+IDQ+QS+NL+L     K +L  ++  AW  GLKT YYLRS      +K
Sbjct: 852 QKYIDQSQSINLFLKPDIHKRELHSLHLNAWKSGLKTLYYLRSEKIADADK 902



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 125/330 (37%), Gaps = 56/330 (16%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD  F+ LGL+ L + Y +         PQ  F  V   +          +   Y 
Sbjct: 6   IDLSRDSKFDELGLKRLRESYMMREET----SPQERFAYVCKQV----GTDRDHSQRLYE 57

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             S      STP L      H    SC+L+ + D   G+   L E   L+          
Sbjct: 58  YTSKHWLSLSTPILSFGKANHGLPISCYLSWIEDTKEGLIDTLSEVNQLSM--------L 109

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               G+G  I  ++ KS GV+  L   +  ++A  Q G R+G+   YL   H DV +F++
Sbjct: 110 GGGVGVGVGIRTSDNKSTGVMSHLNTYDACSLAYKQDGVRRGSYAMYLNNNHPDVLQFIE 169

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYGKE 517
           +RK TGD   R  +++    I D FM+ + +       +  W L  P             
Sbjct: 170 MRKPTGDHNIRCLNLHHGLNISDEFMELIEKCDGGGNIDDTWNLIDPHT----------- 218

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQH 575
                            K    + A  LW+++L    +TG P+I F D CN      Q+ 
Sbjct: 219 -----------------KKITTVGARDLWQRILETRMKTGEPYICFIDTCNKHMYDFQKK 261

Query: 576 VG-VVHSSNLCT--EITLNSSSEETAVCNL 602
            G  +  SNLC   E  + +   +  + +L
Sbjct: 262 KGLTIKQSNLCVAPETMILTEDGQFPIKDL 291


>gi|218289143|ref|ZP_03493379.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240726|gb|EED07905.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 118/254 (46%), Gaps = 42/254 (16%)

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           + LG+ G+   L    IP+ S   V+ ADE  E+I+F AI AS+ELA E+G Y  F+GS 
Sbjct: 1   MALGISGYHQYLAYKGIPWKSETHVKHADELFEWINFFAIEASMELACEKGPYPLFEGSD 60

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D  G            R     WD L++ V   G+RN+  +AIAPT++ + I
Sbjct: 61  WQTGRYF-DLRGY---------RTRPGGPDWDRLRREVAEHGVRNAYLVAIAPTSSTSLI 110

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  IDP Y   +++   +G    V       L  +  W                   
Sbjct: 111 AGSTAGIDPVYARFFLEEKKNG----VVPQTAPNLNDKTFW------------------- 147

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWL 894
                    +  A  ID  W IE+ + RQ+ +DQ+QS NLY     S ++   +Y  AW 
Sbjct: 148 --------YYKEAHTIDQRWSIEACAARQRHVDQSQSFNLYITPGISARQFLDLYMLAWK 199

Query: 895 MGLKTTYYLRSRSA 908
            GLKT YY+RS+S 
Sbjct: 200 RGLKTVYYVRSKSV 213


>gi|213420918|ref|ZP_03353984.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 226

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 16/237 (6%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y +   + G   E  
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 169

Query: 318 QAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           Q  ++ V   L      + +      FY+ +S+F     TP +    T     +  +
Sbjct: 170 QFLYILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTVSSAPAY 226


>gi|308044273|ref|NP_001183684.1| hypothetical protein LOC100502278 [Zea mays]
 gi|238013844|gb|ACR37957.1| unknown [Zea mays]
          Length = 195

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 6/193 (3%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y
Sbjct: 1   MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIY 60

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++ +  KL 
Sbjct: 61  DDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLT 120

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTL-----KGVDGKLNAVPVTDPNSSTHSLGI 940
            ++  AW  GLKT  YYLR+R+A    K T+     K     +N    T+ +       +
Sbjct: 121 SLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTTLLKENGNGMNDGKPTEEDVEAKMAQM 180

Query: 941 PSSCTSDTECEVC 953
             S  +  EC  C
Sbjct: 181 VCSFNNREECLAC 193


>gi|2708498|gb|AAB92484.1| ribonucleotide reductase homolog [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 661

 Score =  201 bits (510), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 45/337 (13%)

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
           ++ T+            CNLGS+N++   +N       +AST+R A+  L  V    N  
Sbjct: 353 SVYTDYDKEDEIGLDISCNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIV 407

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                 ++N   R+IGLG M     L   +I Y S EA + A+     ++F+++  S+E+
Sbjct: 408 NAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEI 467

Query: 702 AQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVK 754
           A+E    Y  F GS +  G +       D      +V+      +  +   W +LK+ V 
Sbjct: 468 ARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVM 527

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ +S   AIAPT +I+ +   +  + P  + +  ++  +         L        
Sbjct: 528 KYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL-------- 579

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                          S  N           +  A+++D   +++  +  Q+ +DQ  S  
Sbjct: 580 ---------------SAQNW--------FFYKEAYDMDMFKVVDLIATIQQHVDQGISFT 616

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 617 LFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 653


>gi|221309912|ref|ZP_03591759.1| hypothetical protein Bsubs1_11096 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314235|ref|ZP_03596040.1| hypothetical protein BsubsN3_11022 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319157|ref|ZP_03600451.1| hypothetical protein BsubsJ_10948 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323431|ref|ZP_03604725.1| hypothetical protein BsubsS_11067 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 848

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 45/337 (13%)

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
           ++ T+            CNLGS+N++   +N       +AST+R A+  L  V    N  
Sbjct: 540 SVYTDYDKEDEIGLDISCNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIV 594

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                 ++N   R+IGLG M     L   +I Y S EA + A+     ++F+++  S+E+
Sbjct: 595 NAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEI 654

Query: 702 AQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVK 754
           A+E    Y  F GS +  G +       D      +V+      +  +   W +LK+ V 
Sbjct: 655 ARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVM 714

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ +S   AIAPT +I+ +   +  + P  + +  ++  +         L        
Sbjct: 715 KYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL-------- 766

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                          S  N           +  A+++D   +++  +  Q+ +DQ  S  
Sbjct: 767 ---------------SAQNW--------FFYKEAYDMDMFKVVDLIATIQQHVDQGISFT 803

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 804 LFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 840



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F++   ++  + +F
Sbjct: 5   QRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKFIELAREDKDYYMF 64

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P  V   +  Y  E +I  E Y+   +   ++  +  +A  L  ++  +  E+G+P+I 
Sbjct: 65  YPHSVYKEYGQYLDELDI-NEMYDELVENPRVRKAKG-NARKLLEQLAILRSESGYPYIM 122

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTE 587
           F D  N   P +H+  V  SNLC  
Sbjct: 123 FADNVNKVHPNEHISKVKFSNLCVT 147


>gi|38639970|ref|NP_943925.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414659|gb|AAQ17702.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 323

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 138/355 (38%), Gaps = 52/355 (14%)

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +  V+     T + +     E ++C L + NL A        Y+   +  R AVR LDN+
Sbjct: 7   IYEVYEDEEYTTVEIEVDVSEISLCTLAAYNLGAIEG-----YEDFLNVARAAVRALDNL 61

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D   + + +A  +    RA+G+G+  F   L    + Y+S  A ++   +ME + F  +
Sbjct: 62  LDYQDYPVVQA-LAAKKRRALGMGVTNFAYFLAKNFVNYSSGNANKLVHRTMEMMQFANL 120

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ELA+ERGA      + W  G+ PID      +      +    ++ W+ L+  +K 
Sbjct: 121 VASMELAKERGANEWHHKTKWADGLLPIDWYNKNVDN----IVPNDLKMDWEWLRAEIKQ 176

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RN    A  P  + + I   +  I+P    +  K +  G F  +   +         
Sbjct: 177 HGLRNDTLSAFMPCESSSQITNSTNGIEPPRGLVSTKQSKDGVFNQLVPEV--------- 227

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIESASRRQKWIDQAQS 872
                                  D L   + TA+++        ++  +  QK++DQ  S
Sbjct: 228 -----------------------DMLGSEYETAWQMTKHGMKGYLDIVAIMQKFVDQMIS 264

Query: 873 LNLYLDEPS-------GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            N Y D           K +     +A   G+K+ YY  +R      +      D
Sbjct: 265 ANTYYDPAVYPGEKIPMKVVLKDISRAQKHGVKSLYYSNTRDGADGTEEQDSSCD 319


>gi|328553046|gb|AEB23538.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 310

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 138/338 (40%), Gaps = 45/338 (13%)

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
            ++ T+            CNLGS+N++   +N       +AST+R A+  L  +    N 
Sbjct: 1   MSVYTDYDKEDEIGLDISCNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTITRKTNI 55

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
                  ++N   R+IGLG M     L    IPY S EA + A+     ++F+++  S+E
Sbjct: 56  VNAPAVARANTLMRSIGLGQMNLHGFLAQNKIPYESEEAKDFANTYFMMVNFYSLQRSME 115

Query: 701 LAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRV 753
           +A+E    Y  F GS +  G +       D      +V++     +  +   W +LK+ V
Sbjct: 116 IAKETGETYYKFDGSTYKSGEYFDKYVTNDYSPKYQKVKNMFGDQHIPNIEDWMKLKEDV 175

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ +S   AIAPT +I+ +   +  + P  + +  ++  +         L       
Sbjct: 176 MKYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL------- 228

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                           S  N           +  A+++D   +++  +  Q+ +DQ  S 
Sbjct: 229 ----------------SAQNW--------FFYKEAYDMDMFKVVDLIATIQQHVDQGISF 264

Query: 874 NLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 265 TLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTKDTTQ 302


>gi|207344318|gb|EDZ71502.1| YIL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 223

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
              ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L
Sbjct: 13  TPTQMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVEL 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     +   +    P+YA + AR  +  L ++  T  + K  +  H  +     ++   
Sbjct: 73  DNLAAETCAYMTTVHPDYATLAARIAISNLHKQT-TKQFSKVIEDLHDWINPATGKHAPM 131

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +E     +        +   L + + Y+RDF + Y G + L   Y L +NG   E PQ
Sbjct: 132 ISDEIYNIVM-------ENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQ 184

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
              MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN
Sbjct: 185 HLVMRVALGIHGSDIE---SVLKTYNLMSLRYFTHASPTLFN 223


>gi|7475800|pir||A69927 ribonucleoside-diphosphate reductase (alph) homolog yosO - Bacillus
           subtilis
          Length = 786

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 45/337 (13%)

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
           ++ T+            CNLGS+N++   +N       +AST+R A+  L  V    N  
Sbjct: 478 SVYTDYDKEDEIGLDISCNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIV 532

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                 ++N   R+IGLG M     L   +I Y S EA + A+     ++F+++  S+E+
Sbjct: 533 NAPAVARANTLMRSIGLGQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEI 592

Query: 702 AQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVK 754
           A+E    Y  F GS +  G +       D      +V+      +  +   W +LK+ V 
Sbjct: 593 ARETGETYYKFDGSTYKSGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQDWMKLKEDVM 652

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ +S   AIAPT +I+ +   +  + P  + +  ++  +         L        
Sbjct: 653 KYGLYHSYRQAIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL-------- 704

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                          S  N           +  A+++D   +++  +  Q+ +DQ  S  
Sbjct: 705 ---------------SAQNW--------FFYKEAYDMDMFKVVDLIATIQQHVDQGISFT 741

Query: 875 LY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 742 LFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 778



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  Y  E +I  E Y+   +   ++  +  +A  L  ++  +  E+G+P+
Sbjct: 1   MFYPHSVYKEYGQYLDELDI-NEMYDELVENPRVRKAKG-NARKLLEQLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           I F D  N   P +H+  V  SNLC  
Sbjct: 59  IMFADNVNKVHPNEHISKVKFSNLCVT 85


>gi|145641094|ref|ZP_01796675.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274255|gb|EDK14120.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 245

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 4/242 (1%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL--HINGSRIEMPQA 319
            G   + L +     +   +   + + RD  F Y  ++ L  +Y +   + G   E  Q 
Sbjct: 1   MGKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQF 60

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V+  L  K  ++ +      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 61  LYLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECD 120

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 121 DSLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKS 180

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + +
Sbjct: 181 CSQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGS 240

Query: 498 GW 499
             
Sbjct: 241 EI 242


>gi|75474388|sp|Q9XD73|NRDJ_STRCT RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|5006433|gb|AAD37499.1|AF111267_1 regulatory protein SCTI [Streptomyces cattleya]
          Length = 599

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 25/361 (6%)

Query: 596 ETAVCNLGSINLLAHFANNQ-------------FDYDKLASTIRTAVRVLDNVIDINCHT 642
           + + CNL S+NL+    ++               D ++ A  +   +  +D  I      
Sbjct: 4   DNSSCNLASLNLMKFLRDDTASDGASGAGGNMSLDAERFAKVVELVITAMDISICFADFP 63

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            EK  ++    R +G+G     + L      Y S     +A      ++  +   S ELA
Sbjct: 64  TEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELA 123

Query: 703 QERGAYSSFKGSLWD--QGVFPIDSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGM 758
              G Y  +  +     + +         A+  D+L   +   +   W ++ +  +    
Sbjct: 124 AVVGPYEGYARNADAHKRVMRQHADANTAAQRMDDLDTPVWAAATEAWQDVLRLGEQNRF 183

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+    +APT TI  +    +  ++P    +  K  + G    + +  V +  +R  + 
Sbjct: 184 RNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNNTVPKALKRLGYQ 243

Query: 818 EAMISDLKYHDGSIGNIERIP---DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQ 871
              +  +  H    GN+   P    +  ++   A     I PM  +   +  Q ++  A 
Sbjct: 244 PEQVEAVVAHIAEHGNVIDAPGLKPEHYEVFDCAMGERAISPMGHVRMMAAAQPFLSGAI 303

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S  + + E  + ++++ IY + W +GLK     R         S  K  + K  A    +
Sbjct: 304 SKTVNMPESATVEEIEEIYYEGWKLGLKALAIYRDNCKVGQPLSAKKKEEAKTEAPAEVE 363

Query: 931 P 931
            
Sbjct: 364 K 364


>gi|229029124|ref|ZP_04185221.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732182|gb|EEL83067.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 281

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|229114890|ref|ZP_04244303.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668582|gb|EEL24011.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
          Length = 281

 Score =  199 bits (505), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIGY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARAFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|47566241|ref|ZP_00237269.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
 gi|47556794|gb|EAL15125.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
          Length = 281

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESVEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|229057078|ref|ZP_04196470.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720219|gb|EEL71798.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 281

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|229095936|ref|ZP_04226912.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102052|ref|ZP_04232764.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228681372|gb|EEL35537.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687446|gb|EEL41348.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 281

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIGY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|217958929|ref|YP_002337477.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|229138140|ref|ZP_04266738.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|217068033|gb|ACJ82283.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228645485|gb|EEL01719.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|324325469|gb|ADY20729.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 281

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|52143987|ref|YP_082842.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228984528|ref|ZP_04144705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155019|ref|ZP_04283133.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195649|ref|ZP_04322415.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|51977456|gb|AAU19006.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228587898|gb|EEK45950.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628577|gb|EEK85290.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775231|gb|EEM23620.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 281

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|229172091|ref|ZP_04299656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611434|gb|EEK68691.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 284

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 40/308 (12%)

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           N  +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I
Sbjct: 2   NVMENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKI 61

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSI 726
            Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D  
Sbjct: 62  AYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYS 121

Query: 727 GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            +  +V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P 
Sbjct: 122 PVTEKVQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPI 181

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              +  ++  +        +L  +      W                            +
Sbjct: 182 VSQIESRTYANATTYYPMPYLSKD----TFW---------------------------YY 210

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLR 904
            ++++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R
Sbjct: 211 KSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTR 270

Query: 905 SRSATSVE 912
           +R  +  E
Sbjct: 271 TRKLSVEE 278


>gi|229022913|ref|ZP_04179433.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
 gi|228738448|gb|EEL88924.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
          Length = 281

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|330903418|gb|EGH33990.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 160

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 125/160 (78%), Positives = 138/160 (86%), Gaps = 1/160 (0%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRT
Sbjct: 1   TNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRT 60

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIK 535
           HDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK
Sbjct: 61  HDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIK 120

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQH
Sbjct: 121 LFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQH 160


>gi|229160404|ref|ZP_04288402.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623128|gb|EEK79956.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 281

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|145639185|ref|ZP_01794792.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271747|gb|EDK11657.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 256

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 115/281 (40%), Gaps = 42/281 (14%)

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            AK+S+   R++G+G++ +   L    + Y+   A ++   + E I ++ + AS+ LA+E
Sbjct: 2   AAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKE 61

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +GA   F  + + +G+ PID+     +   +          W+ L+K ++  G+RNS   
Sbjct: 62  QGACEYFNETTYAKGILPIDTYKKDLDALTQ----EPLHYDWESLRKDIQEFGLRNSTLT 117

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ P+ T + I   +  I+P   ++ +K++  G    V     N +      +  ++ D+
Sbjct: 118 ALMPSETSSQISNATNGIEPPRGHVSIKASKDGILKQVVPEYENLM-----DNYELLWDI 172

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             +DG                           +      QK++DQA S N   D    + 
Sbjct: 173 PSNDG--------------------------YLHLVGIMQKFVDQAISANTNYDPKRFED 206

Query: 885 -------LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
                  L      A+  GLKT YY  +R      +  L  
Sbjct: 207 GKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQEDLDD 247


>gi|134303480|ref|YP_001111349.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
 gi|134022866|gb|ABO45415.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
          Length = 683

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/717 (19%), Positives = 257/717 (35%), Gaps = 111/717 (15%)

Query: 234 TTVYKKPQKATHHEMQCLYPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
             +  K +K  H + + +Y +     + ++   K   + ++   F L Y+ N +      
Sbjct: 13  NNIQSKIEKKKHEKYENIYNQLKNDVKTLQCFRKTVNIEQTKYPFLLTYINNYI------ 66

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F    +Q+L +RY         E  Q  F R+A      +          Y  LS+ + 
Sbjct: 67  -FTGAAIQLLQERYLNKG-----ENIQEGFARIASY--FCDNSNVPLWRNIYKCLSATNI 118

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDL-----------------YGIFGALQENAMLA 394
           + S+       T     ++    T  +D                        + +     
Sbjct: 119 LVSSVIARYQDTYSSSYATVAGVTRDEDTTTKGKACLLAVMPEKYNEDALRLMWKLFDYL 178

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
               G+G     V   G+   G      G+  FL + +       +  KR+     Y+  
Sbjct: 179 AKGIGIGLCIDNVPKYGS--DGYEYIKGGIHEFLDLLSHVNGV--RITKRESNFAVYISI 234

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL- 513
           +   + + L++R+     + +  ++  A  IP++FMK+V  N  W LF   E   L    
Sbjct: 235 YRDTLYDVLNIRQRN---KNKLLNVFPAVKIPNMFMKKVRNNEAWYLFDVTESQLLDKTK 291

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
             KEFE  YE +  +     +   RKI     ++ ++  +  TG P+I F D  N  +  
Sbjct: 292 NEKEFEELYETFVSEQKYTNMYESRKI-----FKDIIKNILMTGSPYIIFIDNVNKFNNI 346

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +H+G + + NLC+EIT   + +  + C L S+N+             L S++   +    
Sbjct: 347 KHLGKIKTLNLCSEITNYCNEDVISTCLLLSVNVANFKHQ-----WDLVSSLENILSKEF 401

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI------------PYASPEAV- 680
           NV   +   + +  +++    +    +MGF + + L +             P    +A+ 
Sbjct: 402 NVNFKDDDFVIELDETSKLCWSY-CKIMGFLATVCLNYFLGSSKRREIGVSPLGVYDAII 460

Query: 681 --------EIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAE 731
                          E +    + ASV  +++ G    +F+ S + +G F  D   L  +
Sbjct: 461 ISKTDQPLFFCKLISESLYKGCVLASVAWSKKFGIRCKNFENSCFSRGEFQFDLRNLTYK 520

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W  LK+ V   GM NS     APTAT + +  V+ S+         
Sbjct: 521 NI----------SDWSSLKRDVLLYGMANSLLTCQAPTATTSLLADVTPSVT-------- 562

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                 +      F+  E   R L    ++      +  I N   + +  KK+       
Sbjct: 563 ------EPHDCCDFICREHSFRSLSLSYVMK-----NFFIKNNVEMINFSKKLFQL---- 607

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
                         +IDQ+QS+ L  +  S + ++++   A+    KT  YY+  +S
Sbjct: 608 --KLSKNLYKVSLPYIDQSQSVILNGNFSSLELMEYL-IYAYNNDFKTALYYINLKS 661


>gi|488079|gb|AAA56995.1| ribonucleoside-diphosphate reductase large subunit [Drosophila
           melanogaster]
          Length = 180

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 5/183 (2%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L  NG   E PQ   MRVA+G+  ++ +    AVE YNLLS  +F  ++PTLF + 
Sbjct: 1   RSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDA---AVETYNLLSERYFTHASPTLFAAA 57

Query: 363 TRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S
Sbjct: 58  TNRPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTS 117

Query: 422 QGVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+ A  V+Q GGKR GA   YLE WH DV EFL+L+KNTG +  R  D+ 
Sbjct: 118 NGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLF 177

Query: 481 TAN 483
            A 
Sbjct: 178 YAL 180


>gi|260889746|ref|ZP_05901009.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860352|gb|EEX74852.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 152/336 (45%), Gaps = 20/336 (5%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLHES 272
            +  +    ++    ++      +K ++A +        +   F   +EE +   + ++ 
Sbjct: 8   KWIYLNNEIMV----KQGEDFQLEKDKEAVYSYFVDYVNKNTVFFHNLEEKMGYLIKNDY 63

Query: 273 MMDFDLVYLANDLK------YERDFAF-EYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323
            +DF  +Y  +++K      Y++ F F  ++     Y  Y L  +     +E  +     
Sbjct: 64  YIDFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSYALMDDTGEKFLERYEDRIAT 123

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYG 382
           V++ LA    EK   A E+  +L +  +  +TPT  NSG +   +L SCFL  + D+L G
Sbjct: 124 VSLYLAQGNVEK---AKEYALMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSG 180

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I      +  L+   GG+  + + VR  G  I G  G++ GV+P +K+  D     NQ G
Sbjct: 181 IGYVFDSSMKLSSIGGGVSINLSKVRARGESIKGVEGRASGVLPIMKILEDIFSYANQLG 240

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+ EFLD +K   D++ R   ++    +PD FM+   ++     F
Sbjct: 241 QRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIGVIVPDKFMQLAMEDEVCYTF 300

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +P  V   +  Y  E ++  E YE+  D   +K  +
Sbjct: 301 NPHTVFLEYGQYLDEMDM-NEMYEKLVDNPNVKKKK 335


>gi|46092514|dbj|BAD14377.1| hypothetical protein [Solanum melongena]
          Length = 169

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G 
Sbjct: 1   YIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLRKNHGK 60

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G++FE  Y  YER+   
Sbjct: 61  EEHRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGEDFEKLYTKYEREG-- 118

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
              K  + + A  LW ++L    ETG P++ +KD CN +S QQ++G + SSNLC
Sbjct: 119 ---KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLC 169


>gi|91790417|ref|YP_551369.1| ribonucleoside reductase [Polaromonas sp. JS666]
 gi|91699642|gb|ABE46471.1| ribonucleoside reductase [Polaromonas sp. JS666]
          Length = 1189

 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 29/299 (9%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL--LSSFHFMCSTP 356
            +L ++Y            +  + RVA  LA  E E  +   E   L  L +        
Sbjct: 21  DVLKEKYLKPGENGV----EDLYRRVARALASVEPEAARAEHEALFLENLHAGAIGAGRI 76

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
                 +    L +CF+  V D + G+        + AL+E A   +  GG+G D++ +R
Sbjct: 77  MSAAGTSIQATLINCFVQPVGDCIQGMDDGGYPGIYEALREAAETMRRGGGVGYDFSRIR 136

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T   + G   ++ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 137 PRGAEVKATASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVFEFITAKRT 196

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FM+ +  +  W L           +    F+ A       
Sbjct: 197 PG----RWNNFNVSVGVSDAFMQALGDDQPWELVH-RAKPGARLIAQGAFQRA------- 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + V++ ++A  LW  ++   ++   P I F D  N  +  ++   + ++N C  
Sbjct: 245 ---DGLWVYQTLAASELWDTVMRSAYDFAEPGILFLDHINQDNNLRYCESIEATNPCVT 300



 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 136/348 (39%), Gaps = 48/348 (13%)

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRV 631
             ++ L               C+LG I L     N         FD+D    ++ T VR 
Sbjct: 668 FDANGLYVHNCGEQPLPPYGCCDLGPIILTRFVRNPFGFNGVPDFDFDAFGKSVTTQVRA 727

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNV+D+    + + +  +   R IG+G  G  +AL +L + Y +PE  E+A      + 
Sbjct: 728 LDNVLDLTFWPLPQQQAESAAKRRIGVGFTGLGNALVMLCLRYDAPEGREMAARIAVCMR 787

Query: 692 FHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
             A +ASV LA+E+GA+  F    +   G F                    +RLP   L+
Sbjct: 788 DAAYAASVALAKEKGAFLKFDAEGYLAPGTF-------------------ANRLP-AGLQ 827

Query: 751 KRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           + ++  G+RNS+ ++IAPT T++       S  I+PS+  +Y +     D +  + + V 
Sbjct: 828 QAIRAHGIRNSHLLSIAPTGTVSLAFADNASNGIEPSFSWMYRRRKRESDGSTTD-YAVE 886

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +   R           +   G +       D L     +A E+     I      Q ++D
Sbjct: 887 DHAWRLY---------RELGGDV-------DRLPGYFVSALEMSAASHIAMMEAVQPFVD 930

Query: 869 QAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            A S  + +           +Y+QAW   LK     R  +       T
Sbjct: 931 TAISKTVNVPVDYAYDDFKGLYQQAWRARLKGLATYRPNAILGAVLET 978


>gi|253572016|ref|ZP_04849420.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
 gi|251838196|gb|EES66283.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
          Length = 524

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 41/330 (12%)

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            + D D     ++ A R L            K  K +   R  G+G+      L  L + 
Sbjct: 41  EKIDQDPEGEEVKHAERNL----------WNKIYKKSGQGRRTGVGITAEGDMLAALGLR 90

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F    I  LAE  
Sbjct: 91  YGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNEREQNNPF----IQRLAEAD 146

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV-K 792
                         EL   +K  G RN  C+ IAPT T + +   +  I+P +  +Y  +
Sbjct: 147 P-------------ELYAEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRR 193

Query: 793 SNMSGDFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDDLK 842
             ++ + T V+   V+E     ++  ++    ++ ++ +        S   I+ +     
Sbjct: 194 RKVNPNDTNVHVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYSQEEIDELVAKSP 253

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-DFIYRQAWLMGLKTTY 901
              AT+ ++D +  ++   R QKW+D + S+ + L     + L + +Y +AW  G K   
Sbjct: 254 YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCT 313

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
             R  S + V  ST    D K    P   P
Sbjct: 314 VYRDGSRSGVLIST--KSDKKETLPPCKPP 341


>gi|222095085|ref|YP_002529145.1| ribonucleoside-diphosphate reductase alpha chain, c-terminal region
           [Bacillus cereus Q1]
 gi|221239143|gb|ACM11853.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus cereus Q1]
          Length = 268

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 123/293 (41%), Gaps = 40/293 (13%)

Query: 629 VRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A    
Sbjct: 1   MEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFF 60

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNR 740
             +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++ 
Sbjct: 61  MMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHI 120

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +    
Sbjct: 121 PTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTY 180

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L  +      W                            + ++++++   LI+  
Sbjct: 181 YPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLI 209

Query: 861 SRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 210 AEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 262


>gi|242278302|ref|YP_002990431.1| ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
 gi|242121196|gb|ACS78892.1| Ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
          Length = 894

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 171/456 (37%), Gaps = 43/456 (9%)

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F+    +N    +F P     +  +Y   ++  Y  ++       ++ +  + A  L  +
Sbjct: 316 FILSRKRNETSDIFDP-----VKSVYNTLWDGDYSRWQELGLP--LRKYDTVKARDLLEE 368

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           +    +++G P I ++D     +P  ++  +    + T      +    + C LG++ L 
Sbjct: 369 ISESAWKSGDPGILYQDTTQRNTPGTYIDPLRLKPMSTNPCGEQALGYWSNCLLGAMVLY 428

Query: 609 AHFAN-----NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLM 661
            +  N      +FD D     +   +  +D + D   N H ++K + ++   + IG+   
Sbjct: 429 RYVVNPFTKEARFDSDLFHDDLTRTMAFMDTMSDLNQNKHPLQKHRDADKYGKRIGIEFT 488

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L +L + Y S E++E   E M   +   IS S  +A+  G   + K     Q   
Sbjct: 489 GLGDMLAMLGMRYGSEESIEFIKEIMRDKAITEISVSANIAERFGEVEALKTKDARQRFL 548

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQ 780
               I  L                 ++L+K++   G+R++    + P+ +I+ +    + 
Sbjct: 549 DCPYISKLGLP--------------NKLQKKILKTGLRHTAFNTVGPSGSISIMSDNCTS 594

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P +   Y +        V     +  LK    W      +  +     G    +   
Sbjct: 595 GIEPVFMFSYARETRLEAGKVFEFIHMPPLK----WMLETNQEHLF-----GKYTALQLK 645

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKT 899
            K  +  A E+D M  I   +  Q++ D + S  + L E + K+ +  IY ++W  GLK 
Sbjct: 646 EKLNYVQADELDYMDRIRMQAAIQQYTDSSISSTINLAEETPKETIFEIYLESWKHGLKG 705

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
               R+     V    L   +    A P     + T
Sbjct: 706 VTVFRNGCKKGV----LSKKEDSKEADPTMKGQNPT 737



 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 14/193 (7%)

Query: 329 ALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVP-DDLYGIF 384
            LK ++ EK   E    LL S  F+ +   L   G  H    LS+C+L  +  D L GIF
Sbjct: 56  FLKNSQFEKNENEQVCELLQSGRFIPAGSILSGLGNEHAKCSLSNCYLAKIESDSLEGIF 115

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A ++ A    Y GG G D T +R  G  ++     S G + F+ + ++    + Q G R
Sbjct: 116 EAQKKLARTYSYRGGSGIDITILRPSGDPVNNAAVTSSGAVSFMPLFSELTNTIGQNG-R 174

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------DRRRTHDMNTANWIPDLFMKRVTQ 495
           +GA+   ++  H +   F+  +    +           +     N +  + D FM+ V +
Sbjct: 175 RGALMISIDIRHPETRRFIWCKSKPEEIFGVDSLTGKVQDVFGANISLKVTDEFMQAVEE 234

Query: 496 NAGWTLFSPDEVS 508
           +  WT   PD   
Sbjct: 235 DKDWTFIFPDRFK 247


>gi|78223118|ref|YP_384865.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194373|gb|ABB32140.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 232

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 9/223 (4%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLA----LKETEKEKRAVEFYNL 345
                  L++L  RY L   NG  IE P+  F R+A  +A    L + +  +    F+ L
Sbjct: 1   MELSENALKVLKARYLLKDENGQIIETPEEMFERIARTVANTEKLYDGDTAQWEERFFTL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSS  F+ ++  L N+G    QL++CF+  + D +  IF  L+  A++ +  GG G  ++
Sbjct: 61  LSSLRFLPNSSALMNAGKPMGQLAACFVLPLEDSMQSIFDTLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ +
Sbjct: 121 RLRPRADIVRSTGGIASGPVSFMKIFNTATDIIKQGGARRGANMGILHIDHPDILEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           ++N  +      + N +  + D FM+ +     + + +P    
Sbjct: 181 KRNVQE----LANFNISVAVTDAFMEALHAKGEYQIVNPRSGK 219


>gi|220935836|ref|YP_002514735.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997146|gb|ACL73748.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1137

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 204/554 (36%), Gaps = 63/554 (11%)

Query: 389  ENAMLAKYSGGLGNDWTPVRGLGAHIHGT--NGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            +   L   +  +G      R     I      G S+    FL+   D   +V QG + KG
Sbjct: 512  KCVALRDLAFEVGM-----RPGNKPITPAIECGSSEFCRSFLRGFYDADGSV-QGSQIKG 565

Query: 447  AVCAYL---ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
             V   L   +   ++  + + LR        R   +    ++PD           +T  +
Sbjct: 566  -VSVRLAQSDIARLEAVQRMLLRLGIASKLYRNRRIERECYLPDG----KGGEKAYTTRA 620

Query: 504  PDE--VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW-RKMLTMLFETGHPW 560
              E  +S  + L   EF    +  ++ +    I+ +R+      +  ++ ++  +   P 
Sbjct: 621  QHELIISGENILRFAEFVGFGDTDKQASLERLIQAYRRRPNRERFVARVASVTVDGEEP- 679

Query: 561  ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
                           +    ++   T             C LGS++L     +      +
Sbjct: 680  -------VYDVRIPGINAFDANGFHTHNCGEQMLPPYGACLLGSVDLTRFVQHPFTGKLR 732

Query: 616  FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            FD+D     +    R+LDNV++I+   + +  ++    R  G+G +G  SAL ++ I Y 
Sbjct: 733  FDWDTYREVVAVFTRMLDNVVEIHGLPLAQQAEALERTRRHGMGFLGLGSALAMMGIRYD 792

Query: 676  SPEAVEIADESMEFISFHAISASVELAQERG----AYSSFKGSL---------WDQGVFP 722
            SPEA    + +   ++       +ELA+E+G     Y  F  +           + G+  
Sbjct: 793  SPEAAAFTERAARELALTGWRTGLELAREKGPAPLMYERFTVTEHLLARYPALAEDGIRV 852

Query: 723  IDSI-GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV--S 779
             D + G +   R    M R + L    L   +   G R ++  AIAPT TIA   G   S
Sbjct: 853  GDVLPGRVLHARYSPYMRRIAGLD-PALVAALAEEGARFTHHSAIAPTGTIALSFGNNVS 911

Query: 780  QSIDPSYQNLYVKSNMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
              I+PS+ + Y+++ +  D      V       L  R L D     + K          +
Sbjct: 912  NGIEPSFAHTYLRNILGRDGATRDTVPVTAYELLAWRALVDPDADPEAK----------Q 961

Query: 837  IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLDFIYRQAWLM 895
             P  L +   TA +I P   +   +  Q WID A S  + +      +    +YR+A  +
Sbjct: 962  GPHRLPEAFVTAGDIAPRAHLAIQAAAQPWIDAAISKTINVPTDCPFEDFRDLYREAHAL 1021

Query: 896  GLKTTYYLRSRSAT 909
            GLK     R   A 
Sbjct: 1022 GLKGCTTYRLNPAA 1035



 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 25/315 (7%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE---KEKRAVEFYNLLS 347
            +     +   +Y L    G  +E  P     RVA  LA  E     +E     F   L+
Sbjct: 16  LQPAARDVWDRKYRLRDATGRPLEDTPAETLARVARALADVEATPALREHWRERFLWALN 75

Query: 348 SFHFMCSTPTLFNSGTR-----HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
               + +   L N+G R        ++     T+ D L  I G L+E  +  +   G+G 
Sbjct: 76  HGA-LPAGRILANAGARDHKRGTSTINCTVSGTIHDTLDEILGKLREAGLTLQSGAGIGY 134

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           +++ +R  GA + G   +S G + F+ V +     +   G R+GA  A     H DV EF
Sbjct: 135 EFSTLRPKGAWVAGAGARSSGPLSFMDVYDQMCRTIASAGDRRGAQMATFHIGHPDVLEF 194

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHD--- 512
           ++ ++  G    R    N +  +PD FM  +   A W L  P          +DL D   
Sbjct: 195 IEAKREPG----RLRQFNLSLLVPDAFMAALDAGADWPLAFPLSPAEQARTGADLQDPKQ 250

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +  + +            R   +V + I A ALW +++   ++   P + F D  N  + 
Sbjct: 251 VVWRHWPETEGYITDGHGRVACRVQQWIPAAALWEQVMRATYDHAEPGVIFIDRVNAENN 310

Query: 573 QQHVGVVHSSNLCTE 587
                 + ++N C  
Sbjct: 311 NGFCESIRAANPCVT 325


>gi|229021468|ref|ZP_04178075.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
 gi|228739830|gb|EEL90220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
          Length = 268

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 40/293 (13%)

Query: 629 VRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A    
Sbjct: 1   MEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAYESAEAKEFARTFF 60

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNR 740
             +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++ 
Sbjct: 61  MMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHI 120

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +    
Sbjct: 121 PTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTY 180

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L  +      W                            + ++++++   LI+  
Sbjct: 181 YPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLI 209

Query: 861 SRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 210 AEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 262


>gi|55980044|ref|YP_143341.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
 gi|55771457|dbj|BAD69898.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
          Length = 2202

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 53/300 (17%)

Query: 583  NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            + C EI L         C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   
Sbjct: 1293 HNCGEIPLTVGEP----CDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFA 1348

Query: 643  IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +   + +    R +GLGLMG   AL  + +PY S EA     E +  +   AI AS  LA
Sbjct: 1349 LPDNEMAAKKLRRLGLGLMGLADALIKMGLPYDSEEARRKVYEIVSAMREEAIRASEALA 1408

Query: 703  QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM---R 759
            +ERG +  ++                                   E ++  +++G+   R
Sbjct: 1409 EERGPFPLYE-----------------------------------EHREYFQSLGIKPRR 1433

Query: 760  NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK-------- 811
            N   + +APT T + + GVS  I+P +     +        +++   V  ++        
Sbjct: 1434 NVALLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPPAPGF 1493

Query: 812  -QRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
             +   WD   I +    D  GS+ N+  +P+ ++++  +A +I P+  +      Q+  D
Sbjct: 1494 AKEGKWDWEKIVEEIQKDGHGSVQNLPFVPEAIRRVFLSAHDIHPLDHVRMQGAVQRAFD 1553



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV-----ANDTAVAVNQGGKRK 445
           AM+ + +  LG +  P      ++   + +  G I  L +         A  +     R+
Sbjct: 682 AMVLEKAQDLGLEAEPFPFNEYYVRVASVEPGGEILTLDLSVEGNHTYLANGLVSHNTRR 741

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           GA  A L   H D+ +FL  +    +         N +    D F++ V ++  W +  P
Sbjct: 742 GAGMATLSIEHPDLLDFLTAKDLDREKAEGDISTFNISVLATDRFLEAVEKDELWPVT-P 800

Query: 505 DEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPW 560
            EV   +  Y   G          ER+     I ++  K+ A  LW ++    + TG P 
Sbjct: 801 IEVPGKYYPYPVEGPYTGKLPPLPEREDGAKAIPLYGGKVPARWLWHEIAWHAWATGEPG 860

Query: 561 ITFKDPCNIRSPQQHVG---VVHSSNLCT 586
           + F D  N  S  + +G    + S+N C 
Sbjct: 861 LIFVDRVNALSALKGLGERYQIRSTNPCF 889



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 45/209 (21%)

Query: 289 RD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           RD + F+     I   +Y    +G  +      F RVA  +A  E E+E+   E  F+ L
Sbjct: 4   RDGYFFDEHAQAIARRQYLQPGDGDIL----GMFRRVAREIAKAEREEERSKWEEEFFRL 59

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++   F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 60  MAEKRFSPGGRILAGAGTVHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 119

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                               +R     AYL   H DVE+
Sbjct: 120 VNLDPYRSKGK----------------------------RARRAVEGVAYLSAEHPDVED 151

Query: 462 FL------DLRKNTGDDRRRTHDMNTANW 484
           F+       +  +   +     +     +
Sbjct: 152 FIRGLMRPPINPDGAKEEISLKNFARVVY 180



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A +E   +  A   Y  LS      +       G R  +        VPDD+ GI  A +
Sbjct: 166 AKEEISLKNFARVVYGALSPELKALAERY----GVRTVKEPPEGRILVPDDMGGIIDAAR 221

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVAND 433
           E A LA+       D++ +R  GA I G+ G S G + FL ++ ++
Sbjct: 222 EAADLARKGQKPHVDFSLLRPEGAPIRGSGGTSSGPVSFLFEIFDN 267



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 872  SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            ++NL     + + ++  Y +A+  G K     R  S      +  K    +       + 
Sbjct: 1965 TINLPNH-ATVEDVEAAYTEAYRTGCKGITVYRDGSREFQVLTVKKEAKEEKAGKTPEEA 2023

Query: 932  NSSTHSLGIPS 942
                     P 
Sbjct: 2024 KPQEARAHEPG 2034


>gi|229084443|ref|ZP_04216722.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698871|gb|EEL51577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 281

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 123/306 (40%), Gaps = 40/306 (13%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +  ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y
Sbjct: 1   MENKEIREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAY 60

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGL 728
            S EA E        +++++I  S+ +A+E+   +  F  S +  G +       D   +
Sbjct: 61  ESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPV 120

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+ P   
Sbjct: 121 TEKVQQLFEGIYIPTKEDWTSLKEEVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVS 180

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  ++  +        +L  +      W                            + +
Sbjct: 181 QIESRTYANATTYYPMPYLSKD----TFW---------------------------YYKS 209

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +++++   LI+  +  Q+ IDQ  S  LY++   S ++L   Y  A   GLK+ YY R+R
Sbjct: 210 SYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTR 269

Query: 907 SATSVE 912
             +  E
Sbjct: 270 KLSVEE 275


>gi|218294852|ref|ZP_03495706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
 gi|218244760|gb|EED11284.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
          Length = 1768

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 54/304 (17%)

Query: 579  VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
            + + N C EI L         C+LG++NL A+  +  F  ++    + TA+R LDNV+D+
Sbjct: 846  IVAHN-CGEIPLTVGEP----CDLGALNLAAYVKDGAFQMEEFRKDVHTAIRFLDNVLDV 900

Query: 639  NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
            N   ++  +++  + R +GLG+MG   AL  + +PYAS EA E   E +  +   AI AS
Sbjct: 901  NRFALKDNEEAAKSLRRLGLGVMGLADALIKMGLPYASEEAREKVYEIISAMREEAIKAS 960

Query: 699  VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             ELA+ERG +  ++                                     ++  + +G+
Sbjct: 961  EELAKERGPFPLYE-----------------------------------AHREYFQALGV 985

Query: 759  R---NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR-- 813
            R   N   + +APT T + + GVS  I+P +     +        +++   V  ++    
Sbjct: 986  RPRRNVALLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPP 1045

Query: 814  -------DLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                     WD   I +    D  GS+ N+  +P+ ++K+   A +I P+  +      Q
Sbjct: 1046 APGFAKDGRWDWEKIVEEIQKDGHGSVQNLPFVPEPIRKVFQCAHDIPPLDHVRMQGVVQ 1105

Query: 865  KWID 868
            +  D
Sbjct: 1106 RAFD 1109



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 34/244 (13%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF-LKVAND- 433
           VPDD+ GI  A +E A LA+       D++ +R  GA I G+ G S G + F L++ ++ 
Sbjct: 206 VPDDMGGIVEAAKEAAALARQGLTPHVDFSLLRPEGAPIRGSGGTSSGPVSFLLEIFDNF 265

Query: 434 -----------------------TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                                      V QGG R+GA  A L   H D+ +FL  +    
Sbjct: 266 LEWAALGAEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 325

Query: 471 DDRR-RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYE 526
           +         N +  + + FM+ + ++A W +  P EV   +  Y   G       +  E
Sbjct: 326 EKAEGDISTFNISVLVTEAFMRALEEDALWPVT-PVEVPGKYYPYPLEGPYTGKIPKLPE 384

Query: 527 RQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSS 582
           R+     I ++  K+ A  LW ++    + TG P + F D  N  S  + +G    + S+
Sbjct: 385 REDGAKAIPLYGGKVPAKWLWHEIAWHAWATGEPGLIFIDRINELSALKGLGPRYQIRST 444

Query: 583 NLCT 586
           N C 
Sbjct: 445 NPCF 448



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 39/182 (21%)

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNL 345
           ER F F+     I   +Y    +G  +      F RVA  +A  E  +E+     +FY L
Sbjct: 2   ERHF-FDEHAQAIAKRQYLQPGDGDIL----GMFRRVAREIARPEKPEERAYWEEKFYEL 56

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLG 401
           +S+  F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 57  MSTKRFSPGGRILAGAGTAHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 116

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                               +R+    AYL   H D+E+
Sbjct: 117 VNLDPYRSKG----------------------------NRKRREVRGVAYLSAEHRDLED 148

Query: 462 FL 463
           F+
Sbjct: 149 FI 150



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 872  SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            ++NL     S + ++  Y +A+  G K     R  S      +  K       A P    
Sbjct: 1521 TINLPNH-ASVEDVEEAYSEAYRTGCKGITVYRDGSREFQVLTVKKESKETEKAKPQEAR 1579

Query: 932  NSSTHSLGIPS 942
                     P 
Sbjct: 1580 AEEARLEEAPP 1590


>gi|126668921|ref|ZP_01739863.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
 gi|126626617|gb|EAZ97272.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
          Length = 1087

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 141/356 (39%), Gaps = 36/356 (10%)

Query: 574  QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTA 628
              +    ++                 C LGS+NL     +       F+Y+K    +   
Sbjct: 680  PGINTFDANGFHAHNCGEQPLPPYGSCLLGSVNLTMFVDDPFTDKASFNYEKYKKVVGIF 739

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             R+LDNV++IN   + + +      R  G+G++G  S L +L +PY S E+V   ++ + 
Sbjct: 740  TRMLDNVVEINGLPLAQQRHEITYKRRHGMGILGLGSTLAMLRMPYGSEESVVFTEDVVR 799

Query: 689  FISFHAISASVELAQERGAYS----SFKGSLWDQGVFP---IDSIGLLAEVRDELAMNRT 741
             ++      S+ L +E+GA       F+ +    G  P    D   L  +++  +   + 
Sbjct: 800  EMAVEGWRQSLALGKEKGAAPIMDDEFEITPKLLGKCPQLTADGYNLGDKLKGRVLHAKY 859

Query: 742  SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
            SR          EL  ++   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 860  SRYMQRIAEVEPELVAQLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARN 919

Query: 794  NMSGDFT---VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
             +         V+ F    L  R L           + G++   +     L     T+ +
Sbjct: 920  IIREGRKTKEKVDVFSFELLAYRHL----------SNPGAMPFSDDADKKLPDYFTTSDD 969

Query: 851  IDPMWLIESASRRQKWIDQAQSL--NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + P   ++  +  Q WID + S   N+  D P  K    IY  A+  GLK     R
Sbjct: 970  VTPAQHVDIQAAAQLWIDSSISKTANVPTDFPY-KNFKDIYLYAFDKGLKGCTTFR 1024



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 119/317 (37%), Gaps = 32/317 (10%)

Query: 294 EYLGLQILYDRYFLHI------NGSRIEMPQAFFMRVAMGLALKETEK--EKRAVEFYNL 345
           +   L I   +Y L        +   +   +    RVA  L+  E +    K   +F   
Sbjct: 15  QDASLDIWNSKYQLKTKTGDAVDKDILATYE----RVAQALSEVENKDLRAKHYKDFAWA 70

Query: 346 LSSFHFMCSTPTLFNSGTRHPQL-----SSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           L       +   + N+G +  +      +      + D +  I G   E  +  K   G+
Sbjct: 71  LKHGAI-PAGRIISNAGAQSHKPATSTINCTVSGNINDSMNDILGKNHEAGLTLKAGCGI 129

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H D+ 
Sbjct: 130 GYEFSTLRPRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDIHHPDII 189

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD-------- 512
           +F+  ++  G    R    N +  I + F+  V  NA W+L  P    ++ +        
Sbjct: 190 DFIQAKREDG----RLRQFNLSLLITEDFINAVRDNADWSLSFPVTDKEVEEEDLDLTDT 245

Query: 513 --LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                ++F +  +       +   +++R + A  +W  ++T  ++   P     D  N  
Sbjct: 246 AKFVYRDFPVVKDYVMNAEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQM 305

Query: 571 SPQQHVGVVHSSNLCTE 587
           +       + ++N C  
Sbjct: 306 NNNWFCEDIRATNPCVT 322


>gi|9629970|ref|NP_046188.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
 gi|1911278|gb|AAC59031.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
          Length = 593

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 123/616 (19%), Positives = 229/616 (37%), Gaps = 92/616 (14%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R+A  +A     K +      +LL S   + S+     +    P      + 
Sbjct: 24  ETPSGFCTRMANKMAGDHPTKTRLFK---SLLESVALIPSSAV--CADKADPSACHLTVL 78

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKSQGVIPFLKVAND 433
           +           L     +     G+G     +R  G+ I          +  ++   N+
Sbjct: 79  SRSYAAATKLDELNRAVAMCVNGTGVGVGADNLRYQGSAIAGELKNNFVEICQYIDGGNN 138

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MK 491
             VA     +RK     +L   +I+    L LR+      R T ++     IPDLF  M+
Sbjct: 139 LNVA-----ERKSRTALFLSLHNINALICLTLRQQNA---RVTPNIFYGLMIPDLFIKMQ 190

Query: 492 RVTQNAGWTLFSPDEVSD---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +  +NA W LF      D   L++ YG+E+E  Y               +K++A  +  +
Sbjct: 191 QRDENATWYLFDGHTTLDGASLNECYGEEYENLY-----WRMVKAKLYLKKMNARRVLGE 245

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++  + E G P++ ++D  N  + Q+ +G V + NLCTEI  ++ S  +++C L ++N  
Sbjct: 246 VIMCITENGFPYVVWRDRVNEYNNQKQLGAVQTLNLCTEICQHADSSASSMCTLLTVNAA 305

Query: 609 AHFANNQFDYDKLASTIR--TAVRVL--------DNVIDINCHTIEKAKKSNHT------ 652
           A+  N  +D + +   I+   A   +        DN +  +C                  
Sbjct: 306 AYCEN--YDREAVLREIKNDLATHGMLDCMPAFGDNELFAHCFAAAYMATFALNTLLGDT 363

Query: 653 -HRAIGLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGA-YS 709
             R IG+   G   A++++     +  A+   A    E++      +S+  ++  G    
Sbjct: 364 ARREIGVTPTGVFDAVYIMCGKDEAYAAMPRYAALVAEYMYMGCALSSIVYSRAYGVICC 423

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F  S + +G+   D   +               L WD ++  +   GM NS   A APT
Sbjct: 424 NFAKSEFSRGLLQFDLRNVTPA------------LQWDSVRHHMMK-GMANSMLTAQAPT 470

Query: 770 ATIANICGVSQSI-DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           AT + +  V++S+  P         N          F +  L+++D         +K   
Sbjct: 471 ATTSLLTNVTESVQYPMAGAAATTKNSGIGRFAETPFFL--LRRQDGDSVNRFVSIK--- 525

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
                                       +E   +   ++DQ+QS+ +   + + + +  +
Sbjct: 526 --------------------------KQVEVYEKTAPFVDQSQSVIVSC-KATYEDVLRV 558

Query: 889 YRQAWLMGLKT-TYYL 903
            R  +   LKT  YYL
Sbjct: 559 LRCTFDAKLKTAIYYL 574


>gi|57867420|ref|YP_189078.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638078|gb|AAW54866.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 969

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 156/377 (41%), Gaps = 27/377 (7%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            K   +  LE ++ +       +  +  +   +  Y + F  Y EE              
Sbjct: 25  DKEAIKLYLEHIKSKT-KQFSNQIARLRYLVEEDYYIDVFKDYSEET------------- 70

Query: 277 DLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALK 331
               L   L Y   F F    ++     YD Y L        +E  +   + V++ LA  
Sbjct: 71  ----LLELLDYAYSFGFEFQSFMAASKFYDTYALKTRDKSQWLEDFEQHNVIVSLYLAGG 126

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           + +  KR ++ + L        +TPT  N+G  +  +L+SC+L T+ D L  I     + 
Sbjct: 127 DVDLAKRYIKAHTL---QTVQTATPTYLNAGRKQRGELASCYLFTMDDTLNSINFIRSQV 183

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           +  +K +GG+  + T +RG GA + G     +G++P  K+        +Q G+R GA  A
Sbjct: 184 SQASKIAGGVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGEVSYADQLGQRAGAGAA 243

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H DV E L+ +K   D+  R   ++    +P LF     ++    +F P  + + 
Sbjct: 244 YLNIFHSDVIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAKEDKDLYMFEPYSIQEE 303

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                   +I   ++  +    E  +  KI+A  +   +  +  ++G+P+I +KD  N  
Sbjct: 304 FGKDVILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKN 363

Query: 571 SPQQHVGVVHSSNLCTE 587
                +G +  SNLC  
Sbjct: 364 HALNELGEIKMSNLCVT 380



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 89/214 (41%), Gaps = 24/214 (11%)

Query: 575 HVGVVHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +   +      ++I      +E     +CNL S+N++      + +        RT +R 
Sbjct: 761 NCTEIFQYMHVSDIKDYYEPDELGQDIICNLASLNMVKSIEEKEIEESI-----RTGMRA 815

Query: 632 LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V + +    +    K+N  +RA+GLG+M F S      I Y S E++++ +     +
Sbjct: 816 LTFVANNSRIEHLPTVHKANKNNRAVGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMM 875

Query: 691 SFHAISASVELAQE-RGAYSSFKGSLWDQ------GVFPIDS-------IGLLAEVRDEL 736
            ++++  S+++A E    +  F  + +        G +   +         +  +V++  
Sbjct: 876 DYYSLDESMKIAVERNDKFYGFDQTDYKAKDGKEFGEYFYKNNRVTKNVEPITPKVKEIF 935

Query: 737 -AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +   ++  W  L + V   G+ NS  ++IAP 
Sbjct: 936 KGIYIPTKEDWQRLAREVDKNGLYNSYRLSIAPY 969


>gi|269941514|emb|CBI49912.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 1091

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 154/377 (40%), Gaps = 27/377 (7%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            K      LE ++ +       +  +  +   +  Y + F  Y EE              
Sbjct: 25  DKEAIELYLEHIKSKT-KQFSNQIARLRYLVEEDYYIDVFKDYSEET------------- 70

Query: 277 DLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALK 331
               L   L Y   F F    ++     YD Y L        +E  +   + V++ LA  
Sbjct: 71  ----LLELLDYAYSFGFEFQSFMAASKFYDTYALKTRDKSQWLEDFEQHNVIVSLYLAGG 126

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           + +  KR ++ + L        +TPT  N+G     +L+SC+L T+ D L  I     + 
Sbjct: 127 DVDLAKRYIKAHTL---QTVQTATPTYLNAGRKHRGELASCYLFTMDDTLNSINFIRSQV 183

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           +  +K +GG+  + T +RG GA + G     +G++P  K+        +Q G+R GA  A
Sbjct: 184 SQASKIAGGVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGEVSYADQLGQRAGAGAA 243

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H DV E L+ +K   D+  R   ++    +P LF     ++    +F P  + + 
Sbjct: 244 YLNIFHSDVIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAKEDKDLYMFEPYSIQEE 303

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                   +I   ++  +    E  +  KI+A  +   +  +  ++G+P+I +KD  N  
Sbjct: 304 FGKDVILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKN 363

Query: 571 SPQQHVGVVHSSNLCTE 587
                +G +  SNLC  
Sbjct: 364 HALNELGEIKMSNLCVT 380



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 144/363 (39%), Gaps = 57/363 (15%)

Query: 575  HVGVVHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
            +   +      ++I   +  +E     +CNL S+N++      + +        RT +R 
Sbjct: 761  NCTEIFQYMHVSDIKDYNEQDELGQDIICNLASLNMVKSIEEKEIEESI-----RTGMRA 815

Query: 632  LDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L  V + +    +    K+N  +RA+GLG+M F S      I Y S E++++ +     +
Sbjct: 816  LTFVANNSRIEHLPTVHKANKNNRAVGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMM 875

Query: 691  SFHAISASVELAQE-RGAYSSFKGSLWDQ------GVFPIDSIGLLAEVRD--------E 735
             ++++  S+++A E    +  F  + +        G +   +  +   V           
Sbjct: 876  DYYSLDESMKIAVERNDKFYGFDQTDYKAKDDKEFGEYFYKNNRVTKNVEPITPKIKEIF 935

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP--TATIANICGVSQSIDPSYQNLYVKS 793
              +   ++  W  L + V   G+ NS  ++IAP  T +I+ I   S ++ P    +  + 
Sbjct: 936  KGIYIPTKEDWQRLAREVDKNGLYNSYRLSIAPYRTQSISYITNCSSALTPVVDVVEKRK 995

Query: 794  NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              + +      +L                               P+ +     TAF+I  
Sbjct: 996  YGNSETYYPMPYL------------------------------SPETMWFYSPTAFDIPQ 1025

Query: 854  MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              +I  A+  QKWIDQ  S  L+++ E    KL  +Y  A   GLK+ YY R++  +  E
Sbjct: 1026 EHIINVAAVAQKWIDQGVSTILFVNSEIETNKLARLYAYAHDRGLKSLYYTRNKLISIAE 1085

Query: 913  KST 915
             ++
Sbjct: 1086 CTS 1088


>gi|207744361|ref|YP_002260753.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
 gi|206595766|emb|CAQ62693.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
          Length = 222

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/207 (51%), Positives = 130/207 (62%), Gaps = 31/207 (14%)

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+R
Sbjct: 18  GVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDR 77

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL G
Sbjct: 78  IPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRG 137

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-----------------------VTDPNS 933
           LKTTYYLR+  AT VEKST+    G LNAV                             +
Sbjct: 138 LKTTYYLRTIGATHVEKSTV--SRGTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAATA 195

Query: 934 STHSLGIPSSCTSDT------ECEVCQ 954
                   + CT         ECE CQ
Sbjct: 196 PAMPEAEGAVCTMRPGDPGFEECEACQ 222


>gi|1617015|emb|CAA69026.1| ribonucleotide reductase RNR1 like protein [Arabidopsis thaliana]
          Length = 236

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 19/244 (7%)

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   ++           + R  W  L+  +   G+RNS  +A  PTA+ + I G 
Sbjct: 1   GILQPDMWNVIP----------SDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGN 50

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-ERI 837
           ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI     R 
Sbjct: 51  NECFEPYTSNIYSRXVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVTCLLRY 110

Query: 838 PDDLKKIHATAFE-IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           PDDLK I+ T +E I     +  A+     IDQ+Q L L        +  F++   W   
Sbjct: 111 PDDLKAIYRTVWEIITXRQWVNWAADCGCNIDQSQGLKLTTWTNPTSQNSFVHFYTWKRV 170

Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTE 949
            KT  YYLRSR+A    K T+     K           V + ++ T    +  S T+  E
Sbjct: 171 WKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEE 230

Query: 950 CEVC 953
           C  C
Sbjct: 231 CLAC 234


>gi|289207441|ref|YP_003459507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thioalkalivibrio sp. K90mix]
 gi|288943072|gb|ADC70771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thioalkalivibrio sp. K90mix]
          Length = 1089

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 126/361 (34%), Gaps = 40/361 (11%)

Query: 574  QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-----ANNQFDYDKLASTIRTA 628
              V    ++ LC              C LGS+NL         A+  FD+++    +R  
Sbjct: 688  PDVHAFDANGLCAHNCGEQPLPPDGACLLGSVNLTRFVSAPFSADTAFDWERFERVVRVF 747

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             R+LDNV DI+   + + +      R  G+G++G  SAL +L   Y S  A     E   
Sbjct: 748  TRMLDNVADISGLPLPEQRAEMLRKRRHGMGILGLGSALAMLGETYGSESAAGFTAEVCR 807

Query: 689  FISFHAISASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             ++  +  A +ELA+E+G               L  Q         +   ++      R 
Sbjct: 808  RLALASWRAGLELAREKGPAPIMDEGFTLTADMLRRQPALAEAGYQVGDVLKGRELHARF 867

Query: 742  SRLPWD------ELKKRVKTIGMRNSNCMAIAPTATIAN--ICGVSQSIDPSYQNLYVKS 793
            S            L   +   G R ++  +IAPT TI+       S  I+P++ +   ++
Sbjct: 868  SPYMQHVAVQDPALVAALAEEGARFTHATSIAPTGTISFSVANNASNGIEPTFLHHTTRN 927

Query: 794  NMSGDFTV---VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                       V+ +    L  R L                 + E  P+DL     TA  
Sbjct: 928  IRRPGRRTREAVDCYSYELLAYRAL----------------VDPEAGPEDLPANAITAER 971

Query: 851  IDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +     I   +  Q W+D A S  L +      +    +Y QAW  GLK     R     
Sbjct: 972  VGVDAHIRMQAAAQPWVDSAISKTLNVPSDIPFEGFKEVYLQAWRAGLKGCTTYRPNPQA 1031

Query: 910  S 910
             
Sbjct: 1032 Q 1032



 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 20/313 (6%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNL 345
           D + +     I  +RY L   +G  ++   +A F RVA  LA  E   ++     EF   
Sbjct: 20  DVSLQPSSYSIWAERYQLRDAHGEPVDASMEAMFDRVARALAAVEAPDQRAPIEREFRWA 79

Query: 346 LSSFHFMCSTPTLFNSGT--RHPQ---LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           L +     +   L N+G     PQ   ++     T+ D L  I  A     +  K   G+
Sbjct: 80  LDNGAI-PAGRILANAGAEAHKPQTTLINCTVSRTIRDSLQAILDANTVAGLTLKAGAGI 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D++ +R  GA + G    + G + F+++ + T   +   G R+GA  A L+  H D+E
Sbjct: 139 GYDFSTLRPKGALVAGAGAPTNGPVAFMQIFDQTCRTIGAAGGRRGAQMATLDIGHPDIE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-----DEVSDLHDLYG 515
            F+  ++  G    R    N +  + D F++ V ++  W L  P      +     DL  
Sbjct: 199 RFILAKRRKG----RLTQFNLSVLVRDAFLEAVERDDEWALAFPLLPVEQDGVPASDLVY 254

Query: 516 KEFEIAYENYERQADR-GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           +++ +  + Y          +V R++ A  LW  ++   ++ G P +   D  N ++   
Sbjct: 255 RDWPVVEDGYRVDDQGRVACRVCRRVRARELWETLMRSTYDVGEPGVILIDQVNRQNNAW 314

Query: 575 HVGVVHSSNLCTE 587
              V+ ++N C  
Sbjct: 315 FDEVIRATNPCVT 327


>gi|328720930|ref|XP_003247166.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 234

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 17/228 (7%)

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ SP++  +  +  E + + A+ AS ELA++ G YSS+K S   QG          
Sbjct: 1   MQYPFGSPKSRNLNIQIFETLYYGALEASCELAEKYGTYSSYKESPISQGYM-------- 52

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      +    W  LK+++   G+RNS  ++I  TA  A I G + SI+P   N 
Sbjct: 53  ------WNKQPSELWNWPLLKEKIAKYGVRNSLLLSIMTTAKTARILGNNDSIEPYTNNF 106

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y     +G++++ N  LVN+L + +LW+E MI+  +Y  GS+  I RIP  +K+++ T++
Sbjct: 107 YHLRISAGEYSIYNCHLVNDLIKLNLWNEDMINTFRYLKGSVQKIARIPQHIKELYPTSW 166

Query: 850 EIDPMWLIESASR---RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           ++    ++E A+R     + I  ++S NL+   P   K+   +   W 
Sbjct: 167 KLPQKIILEMAARERTIHRSISPSRSTNLFFAGPIYGKISSAHFFGWK 214


>gi|213159319|ref|YP_002321362.1| rr1 [Oryctes rhinoceros virus]
 gi|202073505|gb|ACH96181.1| rr1 [Oryctes rhinoceros virus]
          Length = 737

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 145/761 (19%), Positives = 276/761 (36%), Gaps = 135/761 (17%)

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            K    E   +  E F ++            ++ + D+  L + L  +RDF +   G+++
Sbjct: 62  HKYRDSESDPVNGETFRKWF----------PNIGNADIDVL-SWLDTDRDFIYSSHGMRL 110

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALK---------------ETEKEKRAVEFYNL 345
           L +RY L       E  Q   +R+A  L  +               +    +     Y++
Sbjct: 111 LKNRYLL-----PAEPIQYCMLRIAK-LFSRRNSSNNSSSSDGNSIDDINFQLWRLMYDV 164

Query: 346 LSSFHFMCSTPTLFNSGTRH----PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           LS   +M ++  L ++        P  +   L   PD        + E   L     G+G
Sbjct: 165 LSCG-YMHTSSILADADNADKNIVPGEACRLLVCNPDYDRAFVNQINEICNLISLGVGVG 223

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              + V   G  +   NGK +G         D+   ++   +RK  +  Y+E  +  + E
Sbjct: 224 MSASTVPLHGYAV---NGKIRGGFKSFARKLDSCNYLS-IYERKPKIAIYIEMHNNTIYE 279

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEF 518
             +LR           ++     +PD F++    +  W LF  D   +   L +  G E+
Sbjct: 280 AFELRNPL---TNHLENVFVGIMVPDYFIECYENDEDWYLFPGDAKLDGRTLCEFTGDEY 336

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +  Y+ +             K+S+ AL   ++T + ETG P++ + D  N  S  +H+G 
Sbjct: 337 KRMYKRFVEA-----NLYTNKVSSSALMDDLVTCISETGSPYVVWSDNVNRFSNHKHLGK 391

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------------ANNQFDYD----- 619
           + + NLC EI   +S  +++ C L S+N   +                +++FD D     
Sbjct: 392 IKTLNLCAEIANYASVGKSSSCTLMSVNFAMYREFPDVLDRVYAFVEEHSEFDADYNGFH 451

Query: 620 KLASTIRTAV-----RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           + AS  + A        +  V     +            R +G+  +G      +  +  
Sbjct: 452 RAASEFQHATMSKYAYAMGFVATWALNMF---MGVTRKQRELGVSPLGAYDMAIMDGVDP 508

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR 733
                V++  E  E +    I +S + A+      + +KGS + +G+           +R
Sbjct: 509 -----VKVIAELSEAMYKGCIYSSCKFARMYDVECAYYKGSPFSEGI-------PQWLLR 556

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           DE  +  T    W +  + ++T  M NS   A APTAT + + G ++S+      +  + 
Sbjct: 557 DERKIITT---DWTKTCELMRTK-MANSQLTAQAPTATTSMLVGEAESVTIPMSIVMARE 612

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           + +G          N+L    L  + ++                P +   +     +ID 
Sbjct: 613 SENGR---------NDLICYGLLYKLLME---------------PAEPLHLD---NDIDR 645

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             L    +R   +IDQ+QS  ++    S + +  +    + + LKT  YY  +       
Sbjct: 646 QLL--MYARSAPFIDQSQS-TMFSIVLSRQNILNLIMDTYYLKLKTAIYY--TLPKQINN 700

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             T+      +   P      S+         +    CE C
Sbjct: 701 TLTI------VRQTPQPQKRESSTDCQFSPKRSRRPSCEAC 735


>gi|108515096|gb|ABF93321.1| ribonucleotide reductase large subunit [Oryctes rhinoceros virus]
          Length = 737

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 144/761 (18%), Positives = 276/761 (36%), Gaps = 135/761 (17%)

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            K    E   +  E F ++            ++ + D+  L + L  +RDF +   G+++
Sbjct: 62  HKYRDSESDPVNGETFRKWF----------PNIGNADIDVL-SWLDTDRDFIYSSHGMRL 110

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALK---------------ETEKEKRAVEFYNL 345
           L +RY L       E  Q   +R+A  L  +               +    +     Y++
Sbjct: 111 LKNRYLL-----PAEPIQYCMLRIAK-LFSRRNSSNNSSSSDGNSIDDINFQLWRLMYDV 164

Query: 346 LSSFHFMCSTPTLFNSGTRH----PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           LS   +M ++  L ++        P  +   L   PD        + E   L     G+G
Sbjct: 165 LSCG-YMHTSSILADADNADKNIVPGEACRLLVCNPDYDRAFVNQINEICNLISLGVGVG 223

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              + V   G  +   NGK +G         D+   ++   +RK  +  Y+E  +  + E
Sbjct: 224 MSASTVPLHGYAV---NGKIRGGFKSFARKLDSCNYLS-IYERKPKIAIYIEMHNNTIYE 279

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEF 518
             +LR           ++     +PD F++    +  W LF  D   +   L +  G E+
Sbjct: 280 AFELRNPL---TNHLENVFVGIMVPDYFIECYENDEDWYLFPGDAKLDGRTLCEFTGDEY 336

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           +  Y+ +             K+S+ AL   ++T + ETG P++ + D  N  S  +H+G 
Sbjct: 337 KRMYKRFVEA-----NLYTNKVSSSALMDDLVTCISETGSPYVVWSDNVNRFSNHKHLGK 391

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------------ANNQFD-----YD 619
           + + NLC EI   +S  +++ C L S+N   +                +++FD     + 
Sbjct: 392 IKTLNLCAEIANYASVGKSSSCTLMSVNFAMYREFPDVLDRVYAFVEEHSEFDAGYNGFH 451

Query: 620 KLASTIRTAV-----RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           + AS  + A        +  V     +            R +G+  +G      +  +  
Sbjct: 452 RAASEFQHATMSKYAYAMGFVATWALNMF---MGVTRKQRELGVSPLGAYDMAIMDGVDP 508

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR 733
                V++  E  E +    I +S + A+      + +KGS + +G+           +R
Sbjct: 509 -----VKVIAELSEAMYKGCIYSSCKFARMYDVECAYYKGSPFSEGI-------PQWLLR 556

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           DE  +  T    W +  + ++T  M NS   A APTAT + + G ++S+      +  + 
Sbjct: 557 DERKIITT---DWTKTCELMRTK-MANSQLTAQAPTATTSMLVGEAESVTIPMSIVMARE 612

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           + +G          N+L    L  + ++                P +   +     +ID 
Sbjct: 613 SENGR---------NDLICYGLLYKLLME---------------PAEPLHLD---NDIDR 645

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             L    +R   +IDQ+QS  ++    S + +  +    + + LKT  YY  +       
Sbjct: 646 QLL--MYARSAPFIDQSQS-TMFSIVLSRQNILNLIMDTYYLKLKTAIYY--TLPKQINN 700

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             T+      +   P      S+         +    CE C
Sbjct: 701 TLTI------VRQTPQPQKRESSTDCQFSPKRSRRPSCEAC 735


>gi|9631115|ref|NP_047785.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822383|gb|AAC70334.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 596

 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 120/614 (19%), Positives = 226/614 (36%), Gaps = 85/614 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R+A  LA     K +      +LL S   + S+    + GT         + 
Sbjct: 24  ETPAEFCARMARKLAGGHPTKSELMK---SLLESVALVPSSAVCAD-GTDSSSACHLTVF 79

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKSQGVIPFLKVAND 433
                       L     +     G+G     +R  G+ +          +  ++   N 
Sbjct: 80  GRSYAAAVKLEELNRAVAMCVNGTGVGIGADNLRYQGSAVAGELKNNFVEICQYIDGGNK 139

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
            +VA     +RK     +L   +I+    L LR+      R T ++     IPDLF++  
Sbjct: 140 LSVA-----ERKSRTALFLSLHNINSLICLTLRQQNA---RVTPNVFYGLMIPDLFIEAQ 191

Query: 494 TQNAG--WTLFSPDEVSD---LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            ++A   W  F      D   L++ YG+E+E  Y               +K++A  +  +
Sbjct: 192 RRDADASWYFFDGHATLDGASLNECYGREYEDLYARMVEA-----KLYLKKMNARRVLGE 246

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++  + E G P++ ++D  N  + Q+ +GVV + NLCTEI  ++ S   ++C L ++N  
Sbjct: 247 IIMCIAENGFPYVVWRDRVNEYNNQKRLGVVQTLNLCTEICQHADSGADSMCTLLTVNAA 306

Query: 609 AHFAN-------NQFDYDKLASTIRTAV-----RVLDNVIDINCHTIEKAKK---SNHTH 653
           A+  +        + + D  A  +   +       L        +    A          
Sbjct: 307 AYCEDYDRAAVFREIEADLAAHGMLECMPPFGGNELFAHCFATAYMATFALNVLLGETAR 366

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERG-AYSSF 711
           R IG+   G   A++++    A+ +A+ E A  + E+I    + +S+  ++  G    +F
Sbjct: 367 REIGVTPTGLFDAVYIMCGREAAYDAMPECAAAAAEYIYMGCVLSSIAYSRAHGVVCRNF 426

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S + +G+   D   +   +R            WD ++  +   GM NS   A APTAT
Sbjct: 427 AKSEFSRGLLQFDLRRVAPALR------------WDAIRPHMMR-GMANSMLTAQAPTAT 473

Query: 772 IANICGVSQSI-DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            + +  V++S+  P         N          F +   ++           +      
Sbjct: 474 TSLLTNVTESVQYPMAGAAATTKNSGIGRFAETPFFLLRRREAAAAGANKFVSI------ 527

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
                                     +E   R   ++DQ+QS+ +   + + + +  + R
Sbjct: 528 -----------------------EKQVEVYERTAPFVDQSQSVIISC-KATYEDVFRVLR 563

Query: 891 QAWLMGLKT-TYYL 903
           + +   LKT  YYL
Sbjct: 564 RTFDAKLKTAIYYL 577


>gi|37523535|ref|NP_926912.1| ribonucleotide reductase large subunit [Gloeobacter violaceus PCC
            7421]
 gi|35214539|dbj|BAC91907.1| gll3966 [Gloeobacter violaceus PCC 7421]
          Length = 1566

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 129/336 (38%), Gaps = 16/336 (4%)

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLD 633
               ++ L             + CNLGSI +       +     D++ LA T+  + R LD
Sbjct: 1112 RFDANGLVVHNCGEIWLPPNSACNLGSIVISKFMHRTERGVELDWEDLARTVEISTRFLD 1171

Query: 634  NVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            NV+D+        K +     R +GLG+MG+   L    IPY S   +   D+   FI+ 
Sbjct: 1172 NVLDVAEFATPAQKHNVRNVFRQLGLGIMGWADWLKARRIPYDSEAHLREIDKVGRFIAE 1231

Query: 693  HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             A   S  LA E+GA   ++     +   P +        RD      +     +  +  
Sbjct: 1232 RAYRTSEALAAEKGACGIWEEIKDVRPGNPFERW------RDSTGRVLSGDEAAERAEAL 1285

Query: 753  VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN-LYVKSNMSGDFTVVNSFLVNELK 811
             +T   RNS  ++IAPT +IA +   S + +P +   ++ +  +    +  N   +    
Sbjct: 1286 TQT-PRRNSTVLSIAPTGSIAQLASCSWAFEPDFGLTIWKQVYVDASSSQQNWVQIPSPY 1344

Query: 812  QRDLWDEAMISDLKYHDGSIGN--IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               L        +    GS+          +       + EI   W + + SR Q W+D 
Sbjct: 1345 VEALGLGEADRQIVLQTGSLQGTAFAAAHPEEAAAFKISREISWQWHVLAQSRWQNWVDS 1404

Query: 870  AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + S  +    E + +++  +YR A   GLK     R
Sbjct: 1405 SISKTINCSRETTVEEIKEMYRFAQRNGLKGITVYR 1440



 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFN 360
           +Y +          +    RVA  +A  E       +    F+++L+    +     L N
Sbjct: 51  KYLI----GEERTWEDVCRRVARFVAGAEKTPALQREWQERFFSILAPMKMLPGGSILAN 106

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP------VRGLGAHI 414
           S      L +CF+ +  D++  I   + +  +  K+ GG+G +         +R  G   
Sbjct: 107 SDHGTHGLLNCFVLSAEDNIQEIAKLVTDAVLTTKFRGGVGINIGAHGQKGYIRPKGTP- 165

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
              +GK+ G    L + ++T+  +  G K   A   
Sbjct: 166 -FADGKALGPCAVLDMVSETSKKITTGNKCFAAGTL 200



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 11/155 (7%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN--TANWIPDLFMKRVTQNAGW 499
             R+GA    +   H DV EF+  +  +  D R   D+   TA+   D  +  V +NA  
Sbjct: 606 NSRRGAFMFSMHWKHPDVWEFIQAKTQSVMDARVARDLIERTADLAVDKGLSDVEKNARL 665

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADR--GEIKVFRKIS-----AVALWRKMLTM 552
                +      + +          +         + + F K+       V LW ++   
Sbjct: 666 DQLKQELTDTWTETHLSPKGTRDRRWHNANISVLVDDEFFDKLDEGNPGVVDLWNQIAQY 725

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +T  P +   D    RSP ++   + ++N C  
Sbjct: 726 AHDTADPGLLLSDNARRRSPIKNF--ITTTNPCVT 758


>gi|167579176|ref|ZP_02372050.1| hypothetical protein BthaT_13605 [Burkholderia thailandensis TXDOH]
          Length = 361

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 144/381 (37%), Gaps = 48/381 (12%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  LWR++++   +   P + F D      P +    + + + C    L    
Sbjct: 5   WTYASVPARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCGAQPLPPYG 64

Query: 595 EETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 65  SAM----LGAIDLSRFVRNPFGAGGEPRFDFAGFDTAVRVEVRLLDNALDVTRWPLAAHA 120

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 121 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRNHAYAASAELAAERGA 180

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y               D    L  +R    +  +       +   ++  G+RNS+  + A
Sbjct: 181 YPLC------------DRQAHLDALRAGPPLPHS-------VCHAIERDGLRNSHLTSFA 221

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           P A ++   G   S  I+P+   +  ++  +G  T     +  E     L+         
Sbjct: 222 PVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAGTSGAPGMRAENHAHRLFRSLRGERAA 281

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKK 884
                          L    AT  ++ P   +   +  Q ++D      L      S ++
Sbjct: 282 ---------------LPDYFATDADVSPSDRLAMRAALQPYVDAGIENTLTLASHYSLEE 326

Query: 885 LDFIYRQAWLMGLKTTYYLRS 905
           ++ +   AW   LK+    R+
Sbjct: 327 VNALLFAAWRAKLKSVAIRRT 347


>gi|289579754|ref|YP_003478220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Natrialba magadii ATCC 43099]
 gi|289529307|gb|ADD03658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Natrialba magadii ATCC 43099]
          Length = 1416

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 139/389 (35%), Gaps = 54/389 (13%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINL----------------------------LAHFA 612
            ++            EE   CNLG INL                            +  F 
Sbjct: 798  ANGFVVHNCGEQPLEENEACNLGHINLSTLADTDAPDWRVWSEAHADEYDSQAEAVDAFL 857

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                DY++    I    R L+NV+ ++   +E  +++    R IGLG+MG       L I
Sbjct: 858  EEAIDYEEFDERISYGTRFLENVVTMSDFPVEDIEQTVRDMRKIGLGIMGLAQLYIQLGI 917

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
             Y S E  E+A + M  I+  A + S ELA ERG+++ +  S +     P +        
Sbjct: 918  RYGSEEGNEVARQLMTHINHGAKATSHELATERGSFNDWDDSKYAN---PTEYREWFEHQ 974

Query: 733  RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
              E A        W++         +RN N   IAPT T + +   +   +P Y   Y K
Sbjct: 975  TGEDA------DDWED------GFPIRNHNVTTIAPTGTTSMVGNTTGGCEPIYNVAYYK 1022

Query: 793  SNMS---GDFTVV--NSFLVNELKQRDLWDEAMISDLKYHDGSIG-----NIERIPDDLK 842
            +      GD  +V  + + +  L+  D+  +A+  + +    +        +  +PD + 
Sbjct: 1023 NVTDDVQGDEMLVEFDDYFLRTLEANDIDVDAVKEEAQEQMATNQFEGVEGLSTVPDAIG 1082

Query: 843  KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTTY 901
            ++     ++            QK +D A S  +     S  +    ++   +  G K   
Sbjct: 1083 ELFVITSDLSAKQHAAVQCACQKGVDSAISKTVNAPNDSSLEDAKDVFEWVYENGGKGVT 1142

Query: 902  YLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
            Y R  + +    +T        +     +
Sbjct: 1143 YYRDGTRSKQVLTTRADNADFADETEAAE 1171



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 108/290 (37%), Gaps = 53/290 (18%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           + +  FM ++PTL N+G    QLS+CF+ +  DDL  I    ++ A + +  GG+G  + 
Sbjct: 152 MENLSFMPNSPTLMNAGDELQQLSACFVMSPDDDLSDIHETAKKAAEVFQSGGGVGYGFW 211

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV EF+  
Sbjct: 212 KLRPYGDAVGSTGGIASGPITFMRTYDQLCETIAQGGTRRGAQMGIMRVSHPDVIEFIHA 271

Query: 466 R------------------------------KNTGDDRRR------------THDMNTAN 483
           +                              ++  D+  R              + N + 
Sbjct: 272 KNKDVSLAHCLRLNDPDDYTYTSFSEALEEARDLIDEDGRVPKHLRNAVEGHLSNFNISV 331

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR--KIS 541
            + D FM+ +     +T  +P       +      E   E Y R      I+V     I 
Sbjct: 332 GVTDGFMEALQNGEEYTFTNPRT-----EEPHIATEETKEMYSRYDLGEHIEVGEPLSIP 386

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG----VVHSSNLCTE 587
           A  +W +++    E G P + + +  N              + ++N C  
Sbjct: 387 AELIWERIVEGAHENGEPGVIYLERVNKEHSFDTEEHEDHRILATNPCVT 436


>gi|329113327|ref|ZP_08242108.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697152|gb|EGE48812.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 255

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 103/210 (49%), Gaps = 11/210 (5%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L +RY L   G      Q  F RVA             A   Y+ 
Sbjct: 47  DRSRDALLTPFGKATLDNRYLLPDEG-----YQDLFGRVASYYGA----DAAHAQRIYDY 97

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W 
Sbjct: 98  ISKHWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYWG 157

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++L
Sbjct: 158 NLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIEL 216

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVT 494
           R+ T GD  R+  +++    + D FM+ V 
Sbjct: 217 RRPTGGDPNRKALNLHHGVLVSDAFMRAVK 246


>gi|182682908|ref|YP_001837032.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
 gi|182630620|gb|ACB97552.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
          Length = 409

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 146/408 (35%), Gaps = 41/408 (10%)

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALK 331
            D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M +AM +  +
Sbjct: 6   SDDQFDALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYMGMAMAMLSQ 65

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
                  A++ YN +S       TP L    +     +SC L    D L  I  A     
Sbjct: 66  PNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDSIDTAEHIVF 125

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            +     G+G      R +   +        G +P+ +  + +  A  Q   R G+    
Sbjct: 126 KMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQ-QTRGGSATVS 183

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL S     ++H
Sbjct: 184 YPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLMSYFYAPEVH 243

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFR------------KISAVALWRKMLTMLFETGHP 559
           + +  E E  +E     A++    + +            +ISA  +    L +  ETG  
Sbjct: 244 EAFYGEDEAKFEEIYVAAEKRVASLTKIDHEGKTIPAAPRISAKEILDTWLRIRMETGRM 303

Query: 560 WIT----------FKDPCNIRS----------PQQHVGVVHSSNLCTEITLNSSSEETAV 599
           +            F DP  + +          P  HV  ++ +    +        E ++
Sbjct: 304 YAHHIGESNRHGNFLDPIRMTNPFVLNYSATRPFHHVTELYKTQDQLDDMRPEDIGEVSL 363

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           CNLG + L    +       +   T    ++ +D +I+I  +     +
Sbjct: 364 CNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTME 406


>gi|14251036|ref|NP_116398.1| T45 [Tupaiid herpesvirus 1]
 gi|14210730|gb|AAK57093.1| T45 [Tupaiid herpesvirus 1]
          Length = 1035

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/633 (18%), Positives = 224/633 (35%), Gaps = 75/633 (11%)

Query: 311  GSRIEMPQAFFMRVAMGLALK--------------ETEKEKRAVEFY-NLLSSFHFMCST 355
              R E P A  +RVA+ LA++                ++ +   E Y + L S   + S 
Sbjct: 429  DGREECPLAVAVRVALALAVRSTEVCYGGSYLKVLAMDETQEVFEQYLDDLYSERLLGSV 488

Query: 356  PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
              L  +G         F   + D    ++       +L     GL       RG G    
Sbjct: 489  NALAQAGLNESAPQEGFSGRIDDQDVEVWLDENAQRLLGMMKDGLALSLNVTRGYG---- 544

Query: 416  GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
                     +  + +    A       +R   V  Y + WH      L+L + +      
Sbjct: 545  -------HAVDVIYLLAAQARLCRSRQRRATFVRVYFDLWHTQAAAILELIERSASG--- 594

Query: 476  THDMNTANWIPDLFMKRVTQ-NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
               +  A  +P+LF +R     + WT+F  +  ++L++  G EF   Y   ER       
Sbjct: 595  LDGVEFAVNVPNLFFERERHAKSHWTMFPYEHCAELNERTGAEFATVYVQKERNRCGW-- 652

Query: 535  KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-------QHVGV-VHSSNLCT 586
                 +S   L+ +++     TG   + F D   +  P          +G  V   N+C 
Sbjct: 653  ----SVSLGWLYARLVR-AVLTGRLAVVFPDNVGVYGPLLGTMQNVPTLGPHVDMLNVCV 707

Query: 587  EITLN----------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
            E  +              E      +  ++L    +            +R AV   D ++
Sbjct: 708  ERHVPVVRFNVNVDDCYEENVPDGRVSEMDLYIVSSGLAISLCHFRRLVRAAVVAGDLLL 767

Query: 637  D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            + I      +   +   +R + +G  G  + L  + + Y S EAV +A+   E + + A+
Sbjct: 768  EEIFEQQGPQLGVAFQRYRPLCVGYSGLHTLLLRVGVEYDSDEAVTVAERLAEHLYYEAL 827

Query: 696  SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
              SV+L      A S F  + + +G+F  +  G       E          WD L++ + 
Sbjct: 828  RTSVDLCIAGLPACSWFGHTRYSRGLFAFERHGRRPCSVPERL--------WDALREDMS 879

Query: 755  TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              GMRN+  +++ P    A + GVS S  P     + +      F  V++ ++  +    
Sbjct: 880  AFGMRNAQLVSLGPGWEQARLAGVSASFYPLPHRAF-REPC--RFPGVDASVLEAVAPFG 936

Query: 815  LWDE-AMISDLKYHDGSIGNIERIPDDLKKIHAT---AFEIDPMWLIESASRRQKWIDQA 870
              DE      ++    S    ER+   L+    +   A ++ P      +  ++ ++D A
Sbjct: 937  GADEQERRPSIRMPGVSHVLAERV-QLLRSARPSCRLAPDLPPGTAYRLSRAQEPYVDHA 995

Query: 871  QSLNLYLDEPSGKK-LDFIYRQAWLMGLK-TTY 901
             +  +Y+   + ++ +    + A   G K   Y
Sbjct: 996  VAPVIYVKRAAAEETVAVCLKMANRHGAKVGVY 1028


>gi|51874250|ref|YP_073768.1| ribonucleotide reductase subunit 1 [Human herpesvirus 7]
 gi|1710387|sp|P50641|RIR1_HHV7J RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|1139630|gb|AAC54690.1| ribonucleotide reductase, large subunit [Human herpesvirus 7]
 gi|2746258|gb|AAC40742.1| U28 [Human herpesvirus 7]
          Length = 806

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 129/780 (16%), Positives = 253/780 (32%), Gaps = 118/780 (15%)

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           +S+  + +  GL    L  A+I +   +    P          +++L    L   Y K  
Sbjct: 48  ISKILRRLNSGLDMWCLRDAIISALGAM-HDAP---------HVDRL----LGQFYLKTN 93

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQ 299
            A+  +   L  E      +E ++           +L  +     +     F    L   
Sbjct: 94  SASEFDSISLILESENILQKELIEFV----RDSKVELEKILQAAIHVWRAKFSPGVLAAS 149

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-----------AVEFYNLLSS 348
              D      NG   E     F+R+++ LA +  + E               E   LL  
Sbjct: 150 RFLDEISNSFNG-IEENIPTIFLRISVTLASQIKKIEYLQKSFVSHKCPLVEEILILLYK 208

Query: 349 FHFMCSTPTLFNSG--TRHPQLSSCFLTTVPD-DLYGIFGALQENAMLAKYSGG-LGNDW 404
              M   P + N G  +    +       V +  L           + A  +G  +  + 
Sbjct: 209 RVCMLPFPCMSNLGLVSEKKSVFDTVFHNVSNFSLEDFLDINSGFFLPAMLNGSYVSVNL 268

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T                      +++       V +   +   +  YLE WH+ +  +LD
Sbjct: 269 TRYHYEAE-------------SLMELLLSQLQIVEKDTNKTTGLTIYLEIWHLSLLMWLD 315

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +        T  +     +P++FM+R+  +N+ W++F      +L      +F   Y 
Sbjct: 316 FCEILPT----TVQVKFCLILPEIFMERLKTENSYWSVFHKALAINLGLYDESDFTSKYL 371

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV---- 579
             ER A+        +I    L   +   L   G     F+   +  S    +       
Sbjct: 372 ECERTAEHA------RIKTETLLDNICRCL-RRGQMGFIFRKNIHKYSMLPQIASYCLGN 424

Query: 580 --------HSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
                   +  N    I         N S E+ +  N+     + H+ +  F+  K+  T
Sbjct: 425 SMDVIPFEYGLNTAFRIALNLSYFVENVSEEQKSHTNID----MFHYRDKIFNLKKMRKT 480

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   V + + VID      +         R++ + + G  SAL  +++P+ S    ++  
Sbjct: 481 VTELVLIGNAVIDYALENRDFLMDGIVNARSLAICVTGLHSALMSMNLPFNSQLGCQLYR 540

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E I + ++  S+   ++     S F+ S + QG+   D    +      +       
Sbjct: 541 IVCENIYYSSVRTSMNCCKKGAEPCSFFQRSKYAQGILHCDLYDNVEYTLPNVL------ 594

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  L+  +K  G+RN   ++ +  +   ++   SQS  P   N  +K + S      N
Sbjct: 595 --WTNLRSDIKKYGLRNLTFVSGSAMSKEFDLLNCSQSFCPIEGNKILKRS-SIKVLHPN 651

Query: 804 SFLVNEL-------------KQRDLWDEAMISDLKY-----HDGSIGNIERIPDDLKK-- 843
               ++L                 L+     + L+Y     +D S  N     ++  +  
Sbjct: 652 PVFHSDLSVYSTELQTLYIPVYNGLFLNRFKNHLEYLSSVNYDVSKVNKNLFSEEEMQEM 711

Query: 844 -IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            I   AF+     ++        + D  Q+ N++      + +  I    +  G KT  Y
Sbjct: 712 TIFLNAFDYSVNEMLNMYVGALPFTDHGQA-NVFFIN-KTENMRDILVCLYQNGFKTGIY 769


>gi|306825286|ref|ZP_07458628.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432722|gb|EFM35696.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 288

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 52/300 (17%)

Query: 628 AVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            VR L  V D +    +      N      GLG MG  S L    I Y SPE++E     
Sbjct: 1   MVRALTFVTDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIY 60

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDS-----IGLLAEVRDEL-AMN 739
              +++  +  S  +A+ERG  + +F+ S +  G +         +     V++    + 
Sbjct: 61  FMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVF 120

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             S   W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +       
Sbjct: 121 IPSAADWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQ------ 174

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                             E  I  + Y    + + E IP      + +A+++D   +I+ 
Sbjct: 175 ------------------EKKIGKIYYPAAGL-STETIP-----YYTSAYDMDMRKVIDV 210

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 211 YAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 270


>gi|332087395|gb|EGI92523.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 258

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQ 367
            +G R    + F  RV M     E      A++  + + S  F  +TPT  N G +   +
Sbjct: 4   FDGKRY--LEDFADRVTMVALTLEQGDATLALQLTDEMLSGRFQPATPTFLNCGKQQRGE 61

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 62  LVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 121

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 122 MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 181

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +      +NA   LFSP +V  ++     +  I+ E+Y+     
Sbjct: 182 ITFHLAKENAQMALFSPYDVERVYGKPFADIAIS-EHYDELVAD 224


>gi|258623341|ref|ZP_05718346.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
 gi|258584401|gb|EEW09145.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
          Length = 308

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S  DL+   + +   ++++E        +  +    R+       +     HH       
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAV----RQYFLQHVNQNTVFFHH-----LD 68

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     +E+G     +  +    + ++      + + F F  +LG    +  Y L   +G
Sbjct: 69  EKLDYLLEQGYYDAQV-FAPYSREFLHHIWQSAFTQKFRFPSFLGAYKFFTAYALKTRDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
            R  E  +   +  A+ LA  +   E  A++    + S  F  +TPT  N+G +   +L 
Sbjct: 128 KRYLERFEDRVVMTALTLARGD---EAFAMQLMREILSGRFQPATPTFINAGKKSRGELI 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPVMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPDIT 304

Query: 490 MKRV 493
            +  
Sbjct: 305 FELA 308


>gi|190886995|gb|ACE95558.1| ribonucleotide reductase [Muromegalovirus C4A]
          Length = 1173

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 204/633 (32%), Gaps = 97/633 (15%)

Query: 312  SRIEMPQAFFMRVAMGLALK-ETE----------KEKRAVEFYNL----LSSFHFMCSTP 356
             R E P + F RVA  LA++ E +          K   A + ++     L SF  + S  
Sbjct: 530  GREETPISVFARVAAALAVECEVDGGASYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 589

Query: 357  TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAH 413
             L  +G                    IF A+   A        +      +      G  
Sbjct: 590  VLAYAGFGGSNP--------------IFDAVSYRAQFYSAESTINGTLHDICDMVTNGLS 635

Query: 414  IHGTNGKSQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  +     G ++  L +      A+    + K  +  Y + W +D  +      + G +
Sbjct: 636  VSVSAADLGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDAGRE 695

Query: 473  RRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                     A   P +F  R      +  W +F+  E + L  L  K F   YE  ER  
Sbjct: 696  YEGLITF--AVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDG 753

Query: 530  DRGE----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++ A             T   +          +  +        ++ 
Sbjct: 754  RSAITVSPWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVV 806

Query: 586  TEITLNSSSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNV 635
            +   +  +       NL +  L      +  D          +  L S +R AV + + +
Sbjct: 807  SGGFVGCTPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLL 866

Query: 636  IDINCHTIEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID+   T    A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A
Sbjct: 867  IDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTA 926

Query: 695  ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
            + ASV+L       +  F  SL+  G F  D         DE    R ++   ++L++ V
Sbjct: 927  VRASVDLCMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDV 981

Query: 754  KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN---------- 803
               G+RN++ +        AN+ G +    P   N++++          +          
Sbjct: 982  VKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSV 1041

Query: 804  -------------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                  +  L  R        + +    G         DD  ++
Sbjct: 1042 KIEPHRLHEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEV 1101

Query: 845  --HATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                T + +    +I+    RQ ++D AQSL +
Sbjct: 1102 ACSETGWTVSTDAVIKMCVDRQPFVDHAQSLPV 1134


>gi|157676150|emb|CAP08092.1| M45 protein [Murine cytomegalovirus (strain K181)]
          Length = 1174

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 205/633 (32%), Gaps = 97/633 (15%)

Query: 312  SRIEMPQAFFMRVAMGLALK-ETE----------KEKRAVEFYNL----LSSFHFMCSTP 356
             R E P + F RVA  LA++ E +          K   A + ++     L SF  + S  
Sbjct: 531  GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 590

Query: 357  TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAH 413
             L  +G                    IF A+   A        +      +      G  
Sbjct: 591  VLAYAGFGGSNP--------------IFDAVSYRAQFYSAESTINGTLHDICDMVTNGLS 636

Query: 414  IHGTNGKSQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  +     G ++  L +      A+    + K  +  Y + W +D  +      + G +
Sbjct: 637  VSVSAADLGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGRE 696

Query: 473  RRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                  M  A   P +F  R      +  W +F+  E + L  L  K F   YE  ER  
Sbjct: 697  YEGL--MAFAVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDG 754

Query: 530  DRGE----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++ A             T   +          +  +        ++ 
Sbjct: 755  RSAITVSPWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVV 807

Query: 586  TEITLNSSSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNV 635
            +   +  +       NL +  L      +  D          +  L S +R AV + + +
Sbjct: 808  SGGFVGCTPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLL 867

Query: 636  IDINCHTIEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID+   T    A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A
Sbjct: 868  IDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTA 927

Query: 695  ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
            + ASV+L       +  F  SL+  G F  D         DE    R ++   ++L++ V
Sbjct: 928  VRASVDLCMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDV 982

Query: 754  KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN---------- 803
               G+RN++ +        AN+ G +    P   N++++          +          
Sbjct: 983  VKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSV 1042

Query: 804  -------------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                  +  L  R        + +    G         DD  ++
Sbjct: 1043 KIEPHRLHEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEV 1102

Query: 845  --HATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                T + +    +I+    RQ ++D AQSL +
Sbjct: 1103 ACSETGWTVSTDAVIKMCVDRQPFVDHAQSLPV 1135


>gi|115343624|gb|ABI94733.1| pM45 [Murid herpesvirus 1]
 gi|289547264|gb|ADD10427.1| hypothetical protein [Murid herpesvirus 1]
          Length = 1174

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 205/633 (32%), Gaps = 97/633 (15%)

Query: 312  SRIEMPQAFFMRVAMGLALK-ETE----------KEKRAVEFYNL----LSSFHFMCSTP 356
             R E P + F RVA  LA++ E +          K   A + ++     L SF  + S  
Sbjct: 531  GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 590

Query: 357  TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAH 413
             L  +G                    IF A+   A        +      +      G  
Sbjct: 591  VLAYAGFGGSNP--------------IFDAVSYRAQFYSAESTINGTLHDICDMVTNGLS 636

Query: 414  IHGTNGKSQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  +     G ++  L +      A+    + K  +  Y + W +D  +      + G +
Sbjct: 637  VSVSAADLGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGRE 696

Query: 473  RRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                  M  A   P +F  R      +  W +F+  E + L  L  K F   YE  ER  
Sbjct: 697  YEGL--MAFAVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDG 754

Query: 530  DRGE----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++ A             T   +          +  +        ++ 
Sbjct: 755  RSAITVSPWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVV 807

Query: 586  TEITLNSSSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNV 635
            +   +  +       NL +  L      +  D          +  L S +R AV + + +
Sbjct: 808  SGGFVGCTPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLL 867

Query: 636  IDINCHTIEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID+   T    A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A
Sbjct: 868  IDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTA 927

Query: 695  ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
            + ASV+L       +  F  SL+  G F  D         DE    R ++   ++L++ V
Sbjct: 928  VRASVDLCMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDV 982

Query: 754  KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN---------- 803
               G+RN++ +        AN+ G +    P   N++++          +          
Sbjct: 983  VKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSV 1042

Query: 804  -------------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                  +  L  R        + +    G         DD  ++
Sbjct: 1043 KIEPHRLHEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEV 1102

Query: 845  --HATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                T + +    +I+    RQ ++D AQSL +
Sbjct: 1103 ACSETGWTVSTDAVIKMCVDRQPFVDHAQSLPV 1135


>gi|61743911|ref|YP_214057.2| Homolog of the large subunit of ribonucleotide reductase [Murid
           herpesvirus 1]
          Length = 912

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 205/633 (32%), Gaps = 97/633 (15%)

Query: 312 SRIEMPQAFFMRVAMGLALK-ETE----------KEKRAVEFYNL----LSSFHFMCSTP 356
            R E P + F RVA  LA++ E +          K   A + ++     L SF  + S  
Sbjct: 269 GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 328

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAH 413
            L  +G                    IF A+   A        +      +      G  
Sbjct: 329 VLAYAGFGGSNP--------------IFDAVSYRAQFYSAESTINGTLHDICDMVTNGLS 374

Query: 414 IHGTNGKSQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           +  +     G ++  L +      A+    + K  +  Y + W +D  +      + G +
Sbjct: 375 VSVSAADLGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGRE 434

Query: 473 RRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                 M  A   P +F  R      +  W +F+  E + L  L  K F   YE  ER  
Sbjct: 435 YEGL--MAFAVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDG 492

Query: 530 DRGE----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                        ++ A             T   +          +  +        ++ 
Sbjct: 493 RSAITVSPWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVV 545

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNV 635
           +   +  +       NL +  L      +  D          +  L S +R AV + + +
Sbjct: 546 SGGFVGCTPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLL 605

Query: 636 IDINCHTIEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           ID+   T    A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A
Sbjct: 606 IDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTA 665

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           + ASV+L       +  F  SL+  G F  D         DE    R ++   ++L++ V
Sbjct: 666 VRASVDLCMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDV 720

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN---------- 803
              G+RN++ +        AN+ G +    P   N++++          +          
Sbjct: 721 VKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSV 780

Query: 804 -------------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                 +  L  R        + +    G         DD  ++
Sbjct: 781 KIEPHRLHEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEV 840

Query: 845 --HATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               T + +    +I+    RQ ++D AQSL +
Sbjct: 841 ACSETGWTVSTDAVIKMCVDRQPFVDHAQSLPV 873


>gi|218509638|ref|ZP_03507516.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Brasil 5]
          Length = 392

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 112/290 (38%), Gaps = 25/290 (8%)

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTA 628
                 G +  SN C+E        +   CNL S+NLL     A  + +       +R  
Sbjct: 1   HTSPAGGPIRGSNPCSEYMFL----DDTACNLASLNLLQFKDKATKRINIADYEHAVRLW 56

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             VL+  + +     ++  + ++ +R +GLG       L    IPY S EA  IA     
Sbjct: 57  TVVLEVSVMMAQFPSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTA 116

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWD------------------QGVFPIDSIGLLA 730
            ++    + S E+A E G + +F  +                          ID + L+ 
Sbjct: 117 IMTGICYATSAEMAAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIH 176

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
               +  +   ++  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  +
Sbjct: 177 SENPDQDLAAHAKSAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALV 236

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             K    G +  + +  V +  +   + E+ I++++ +    GN+ + P 
Sbjct: 237 KFKKLAGGGYFKIINRAVPDALRTLGYSESQIAEIEAYAVGHGNLNQAPA 286


>gi|190886666|gb|ACE95231.1| ribonucleotide reductase [Muromegalovirus G4]
          Length = 1175

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 204/633 (32%), Gaps = 97/633 (15%)

Query: 312  SRIEMPQAFFMRVAMGLALK-ETE----------KEKRAVEFYNL----LSSFHFMCSTP 356
             R E P + F RVA  LA++ E +          K   A + ++     L SF  + S  
Sbjct: 532  GREETPISVFARVAAALAVECEVDGGASYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 591

Query: 357  TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAH 413
             L  +G                    IF A+   A        +      +      G  
Sbjct: 592  VLAYAGFGGSNP--------------IFDAVSYRAQFYSAESTINGTLHDICDMVTNGLS 637

Query: 414  IHGTNGKSQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  +     G ++  L +      A+    + K  +  Y + W +D  +      + G +
Sbjct: 638  VSVSAADLGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGRE 697

Query: 473  RRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
                     A   P +F  R      +  W +F+  E + L  L  K F   YE  ER  
Sbjct: 698  YEGLISF--AVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDG 755

Query: 530  DRGE----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++ A             T   +          +  +        ++ 
Sbjct: 756  RSAITVSPWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVV 808

Query: 586  TEITLNSSSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNV 635
            +   +  +       NL +  L      +  D          +  L S +R AV + + +
Sbjct: 809  SGGFVGCTPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLL 868

Query: 636  IDINCHTIEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ID+   T    A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A
Sbjct: 869  IDMTVRTNAYGAGKLLTLYRDLHIGVVGFHAVVNRLGQKFADMESYDLNQRIAEFIYYTA 928

Query: 695  ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
            + ASV+L       +  F  SL+  G F  D         DE    R ++   ++L++ V
Sbjct: 929  VRASVDLCMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDV 983

Query: 754  KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN---------- 803
               G+RN++ +        AN+ G +    P   N++++          +          
Sbjct: 984  VKHGIRNASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSV 1043

Query: 804  -------------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
                                  +  L  R        + +    G         DD  ++
Sbjct: 1044 KIEPHRLHEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEV 1103

Query: 845  --HATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                T + +    +I+    RQ ++D AQSL +
Sbjct: 1104 ACSETGWTVSTDAVIKMCVDRQPFVDHAQSLPV 1136


>gi|302348230|ref|YP_003815868.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328642|gb|ADL18837.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
          Length = 977

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 38/294 (12%)

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDL 513
            +   F+  ++    D     + N +    D FM+ V     W + +P   DE   ++ L
Sbjct: 290 PEEAGFIQAKRAPMQDAF-LTNFNISVGTHDAFMEAVINGQEWWMVNPRYSDEGDGIYRL 348

Query: 514 YGK-----------------EFEIAYEN-YERQADRGEIKVFRKI------------SAV 543
           +                     E  Y N +E   +R + ++ + +             A 
Sbjct: 349 HYSVSRATGEGRALRVLRESRIETPYMNVFEEVVERAKSRIPKDMDTSRRNPHGWHYPAR 408

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW +++   +E G P + F D  N   P   +G V ++N C E  L         CNLG
Sbjct: 409 RLWEEIVRGAWEGGDPGMIFLDNHNKWVPTPWLGAVAATNPCGEEPLYPYES----CNLG 464

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S++L  +  + +FD D  A  +  AV  LD VID N    ++    N   R +GLG+MG 
Sbjct: 465 SLSLDKYIRDGKFDLDSFAKDVDLAVDGLDAVIDYNRQPDQRQDLVNKFTRKVGLGIMGL 524

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            +AL  L+IPY S EAV     +M  I   A   S EL    G   +F+   +D
Sbjct: 525 ANALAKLNIPYDSEEAVAFTMIAMAMIEAEAWKRSWELGSRLGHAPAFECRKFD 578



 Score =  141 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 288 ERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           E D  F Y  +++L  RY      G  IE P     RVA+G + +           Y  +
Sbjct: 62  EDDMKFTYNAIRVLMSRYMTKDLRGRYIETPSMVMRRVALGFSGRVDPD-----SLYRAM 116

Query: 347 SSFHFMCSTPT--LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
               FM ++PT     +      LS+C++T V DD+ GI   L    M  KY GG G  +
Sbjct: 117 IEGRFMFNSPTLFNMYADGAKGALSACYVTPVYDDMRGIMDGLTVQVMTFKYGGGEGFSF 176

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           + +R  G  + GT+G + G + F+++ + +   V QGGKR+GA    L  WH D+ 
Sbjct: 177 SELRPRGDVVAGTSGVASGPLSFMRLYDVSTDVVKQGGKRRGANMGILHDWHPDLY 232



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 48/251 (19%)

Query: 746 WDELKKRVKTIGMR---NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           W+ LK   +++G R   ++     APT TI+ I G +  I+P +  +Y++    G+   V
Sbjct: 699 WNALKDYGRSLGARAPRHTAVNTTAPTGTISIIAGTTSGIEPYFALVYLRRVTIGELWEV 758

Query: 803 NSFLVNEL----------KQRDLWDEAMISDLKYHDGSI--------------------- 831
                + L           +     E ++  +  H GS+                     
Sbjct: 759 VREFRDRLYSAIAEAGAPAELG---EKLLEAISRHKGSLRWALEDVEKAIRDAQLQEVDG 815

Query: 832 ------GNIERI---PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
                  + E++     +L K+ AT+ + D  + I   +  Q + DQA S  + L  + S
Sbjct: 816 KIVKANWDAEKLISRIKELAKLFATSMDFDVWYHIAHQAAAQLYTDQAISKTVNLPKDAS 875

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
              +   Y  AWL GLK     R  S   V+     G   +LN VPV      +  + + 
Sbjct: 876 VNAVATAYLTAWLTGLKGVTVYRDESK-GVQVIYFGGQQRELNRVPVKLLKKPSMRMALI 934

Query: 942 SSCTSDTECEV 952
               +  E   
Sbjct: 935 KRSMNAEEALA 945


>gi|190886830|gb|ACE95394.1| ribonucleotide reductase [Muromegalovirus WP15B]
          Length = 1180

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/626 (17%), Positives = 202/626 (32%), Gaps = 83/626 (13%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             R E P + F+RVA  LA  E E +  A   Y +LSS     +             L S 
Sbjct: 537  GREETPISVFVRVAAALA-VECEVDGGA--SYKILSSKPVDAAQAFDAF----LSALCSF 589

Query: 372  FLTTVP--------DDLYGIFGALQENAMLAKYSGGLGNDWTPV---RGLGAHIHGTNGK 420
             +   P             IF A+   A        +      +      G  +  +   
Sbjct: 590  AIIPSPRVLAYARFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAAD 649

Query: 421  SQG-VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
              G ++  L +      A+    + K  +  Y + W +D  +      + G +       
Sbjct: 650  LGGDIVASLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEGLISF 709

Query: 480  NTANWIPDLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE--- 533
              A   P +F  R      +  W +F+  E + L  L  K F   YE  ER         
Sbjct: 710  --AVNTPRIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMERDGRSAITVS 767

Query: 534  -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                  ++ A             T   +          +  +        ++ +   +  
Sbjct: 768  PWWAVCQLDA-------CVARGNTAVVFPHNVKSMIPENIGRPAVCGPGVSVVSGGFVGC 820

Query: 593  SSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNVIDINCHT 642
            +       NL +  L      +  D          +  L S +R AV + + +ID+   T
Sbjct: 821  TPIHELCINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRT 880

Query: 643  IEK-AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                A K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L
Sbjct: 881  NAYGAGKLLTLYRDLHIGVVGFHAVVNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDL 940

Query: 702  AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                   +  F  SL+  G F  D         DE    R ++   ++L++ V   G+RN
Sbjct: 941  CMAGADPFPKFPKSLYAAGRFYPDLFD-----DDERGPRRMTKEFLEKLREDVVKHGIRN 995

Query: 761  SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN----------------- 803
            ++ +        AN+ G +    P   N++++          +                 
Sbjct: 996  ASFITGCSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRL 1055

Query: 804  ------------SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI--HATAF 849
                           +  L  R        + +    G         DD  ++    T +
Sbjct: 1056 HEEDLSCLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGW 1115

Query: 850  EIDPMWLIESASRRQKWIDQAQSLNL 875
             +    +I+    RQ ++D AQSL +
Sbjct: 1116 TVSTDAVIKMCVDRQPFVDHAQSLPV 1141


>gi|9633099|ref|NP_050209.1| large ribonuclease reductase [Human herpesvirus 6]
 gi|82007175|sp|Q9QJ39|RIR1_HHV6Z RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|5733539|gb|AAD49642.1|AF157706_39 U28 [Human herpesvirus 6B]
          Length = 804

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 173/496 (34%), Gaps = 68/496 (13%)

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDE 506
           +  Y+E WH+    +LDL +   +  R T  +     IP +FM R   + A W+LF  + 
Sbjct: 299 LTVYVEVWHVSALTWLDLYQVLPETSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNI 354

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+  
Sbjct: 355 AFELGKCDEVTFSTKYLEFERTTDHA------KITMASFVEKICRCL-KRGRMGLIFRKN 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--------- 617
               S   HV  ++      ++      +    C    +N++    +   D         
Sbjct: 408 VYQYSMIPHV-PLYCGGDFLDVL--PVRDGINTCLRMLLNVVHFLGDEVSDELTEEIDFV 464

Query: 618 --------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                   +++L   +R  V V + VID      +  ++     R++G+ + G  S    
Sbjct: 465 RLQCKFFMFNELRRVVRKMVLVANAVIDYAVDNKDFLREGIVDGRSLGICITGLHSVFMT 524

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL 728
           + + YA P+A  +     E I +  +  SV+   +     + F  S +  G+   D    
Sbjct: 525 VGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCMKGAEPCNLFDRSKYALGMLYFDQFDN 584

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +     E          W  L+K V   G+RN +  A        +I   S+S  P   N
Sbjct: 585 VECTLPEEL--------WTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPMEDN 636

Query: 789 ----------------------LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
                                 +Y     S    V N+ L+N   +   + + +   +  
Sbjct: 637 KILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIPVYNNLLLNRFNKHQQYLKTVGYRVLN 696

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            D ++   + + DDL  +    F      LIE       ++DQ Q+ N++    +   L 
Sbjct: 697 VDTNLFTDKEL-DDL-AVFKDGFSYPLNDLIEMYKSGLPFLDQGQA-NVFYFNDTVS-LK 752

Query: 887 FIYRQAWLMGLK-TTY 901
            +    +  G K   Y
Sbjct: 753 HLLPLLYKTGFKVAMY 768


>gi|302793901|ref|XP_002978715.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
 gi|300153524|gb|EFJ20162.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
          Length = 211

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 38/227 (16%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W   K+ V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 7   SGRWDWPASKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGEFV 66

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+N+L    +W                     PD   ++  T +EI     ++ A
Sbjct: 67  VVNKHLLNDLTDLGIWT--------------------PDLNIQVGLTVWEIKQ---VDMA 103

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
             R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YYLRS++A    K T+   
Sbjct: 104 VERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTVDTA 163

Query: 920 DGK-------------LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                V  + P     +  +  S  +   C  C
Sbjct: 164 SLKVGLFSTVLSSHLFCTRVLQSQPTEELLA-QMVFSLENRENCLAC 209


>gi|4996016|dbj|BAA78249.1| ribonucleotide reductase large sub-unit [Human herpesvirus 6B]
          Length = 804

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 173/496 (34%), Gaps = 68/496 (13%)

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDE 506
           +  Y+E WH+    +LDL +   +  R T  +     IP +FM R   + A W+LF  + 
Sbjct: 299 LTVYVEVWHVSALTWLDLYQVLPETSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNI 354

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+  
Sbjct: 355 AFELGKCDEVTFSTKYLEFERTTDHA------KITMASFVEKICRCL-KRGRMGLIFRKN 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--------- 617
               S   HV  ++      ++      +    C    +N++    +   D         
Sbjct: 408 VYQYSMIPHV-PLYCGGDFLDVL--PVRDGINTCLRMLLNVVHFLGDEVSDELTEEIDFV 464

Query: 618 --------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                   +++L   +R  V V + VID      +  ++     R++G+ + G  S    
Sbjct: 465 RLQCKFFMFNELRRVVRKMVLVANAVIDYAVENKDFLREGIVDGRSLGICITGLHSVFMT 524

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGL 728
           + + YA P+A  +     E I +  +  SV+   +     + F  S +  G+   D    
Sbjct: 525 VGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCMKGAEPCNLFDRSKYALGMLYFDQFDN 584

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +     E          W  L+K V   G+RN +  A        +I   S+S  P   N
Sbjct: 585 VECTLPEEL--------WTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPMEDN 636

Query: 789 ----------------------LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
                                 +Y     S    V N+ L+N   +   + + +   +  
Sbjct: 637 KILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIPVYNNLLLNRFNKHQQYLKTVGYRVLN 696

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            D ++   + + DDL  +    F      LIE       ++DQ Q+ N++    +   L 
Sbjct: 697 VDTNLFTDKEL-DDL-AVFKDGFSYPLNDLIEMYKSGLPFLDQGQA-NVFYFNDTVS-LK 752

Query: 887 FIYRQAWLMGLK-TTY 901
            +    +  G K   Y
Sbjct: 753 HLLPLLYKTGFKVAMY 768


>gi|66391288|ref|YP_238597.1| ORF033 [Staphylococcus phage Twort]
 gi|62637218|gb|AAX92329.1| ORF033 [Staphylococcus phage Twort]
          Length = 300

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+ + ++  +  F+  +V   +     E  ++ E Y+   +  +I+  +  +   +   +
Sbjct: 1   MELLKEDKYYYTFNVYDVKQKYGFTLNEINMS-EYYDIFVNDDDIRKEKYYT-RDIMTDI 58

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT--------------LNSSSE 595
                E+G+P++ + D  N   P + +G V  SNLC E+T               N +  
Sbjct: 59  ARTQLESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVTQLQEVSDIFPYLQSHNDTIG 118

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
              VC LGS+NL+            L  ++ + +R L  V D +N   +   +K+N   R
Sbjct: 119 NDVVCTLGSLNLVNVVEKGL-----LKESVDSGIRSLSKVTDLMNVPFLPSVQKANDELR 173

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M +   L    + Y S E+++IA+     I +++I +S+ELA+E    +  FK 
Sbjct: 174 AIGLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYSIKSSMELAKETGKVFKGFKE 233

Query: 714 SLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           S +  G      I    E R + A      +   +   W+ L K VK  GM N     +A
Sbjct: 234 SEYYTGEVFSSYIQKSHEPRTKKAKKVLEKVYIPTEEDWNSLSKDVKEYGMYNGYLNNLA 293

Query: 768 PT 769
           P 
Sbjct: 294 PY 295


>gi|7532767|emb|CAB87136.1| aerobic ribonucleotide reductase class Ia [Yersinia enterocolitica]
          Length = 209

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 87/206 (42%), Gaps = 7/206 (3%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +R LG+ I G      G IPF K  
Sbjct: 1   VLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 60

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +
Sbjct: 61  QTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQ 120

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  
Sbjct: 121 RLLKGEDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSL 176

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQ 574
           M+     TG  +I   D CN  SP  
Sbjct: 177 MMQERASTGRIYIQNVDHCNTHSPFD 202


>gi|330318802|gb|AEC11061.1| ribonucleotide reductase large subunit a [Camellia sinensis]
          Length = 160

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  IPD+LK I+ T +EI   
Sbjct: 1   LSGEFVVVNKHLLHDLTEMGLWSPALKNQIIYEDGSVQKIPEIPDELKVIYKTVWEIKQK 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K
Sbjct: 61  TLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRSRAAADAIK 120

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+      LN  P  + + ++    +  S T+  EC  C
Sbjct: 121 FTVDTS--ILNEKPKIEDDENSKMSQMVCSLTNREECMAC 158


>gi|70915525|ref|XP_732202.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502850|emb|CAH78399.1| hypothetical protein PC001041.02.0 [Plasmodium chabaudi chabaudi]
          Length = 182

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 7/185 (3%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQILYD 303
           +M  +    +      G  A L+ + + DF +     L  ++ Y RDF ++Y G + L  
Sbjct: 1   DMGKVAEALYTYKDVRGRPASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLER 60

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y L IN   IE PQ   MRV++G+ + + EK   A+E Y+L+S  +F  +TPTLFNSGT
Sbjct: 61  SYLLRINNKIIERPQHLLMRVSIGIHIDDLEK---ALETYHLMSQKYFTHATPTLFNSGT 117

Query: 364 RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             PQ+SSCFL ++  D + GIF  L++ A+++K +GG+G     +R   ++I GTNG S 
Sbjct: 118 PRPQMSSCFLLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRAQNSYIRGTNGISN 177

Query: 423 GVIPF 427
           G++P 
Sbjct: 178 GLVPM 182


>gi|7532415|emb|CAB86983.1| aerobic ribonucleotide reductase class Ia [Acinetobacter
           calcoaceticus]
          Length = 209

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +R LG+ I G      G IPF K  
Sbjct: 1   VLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHF 60

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   
Sbjct: 61  QTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYT 120

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  
Sbjct: 121 RLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRK----QRVKAVELFSL 176

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHV 576
           M+     TG  +I   D CN  SP   V
Sbjct: 177 MMQERASTGRIYIQNVDHCNTHSPFDPV 204


>gi|288573496|ref|ZP_06391853.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569237|gb|EFC90794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 994

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 137/406 (33%), Gaps = 59/406 (14%)

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
             V    ++ L               CNLGS+NL A  +        FD D     +  +
Sbjct: 460 PGVNAFDANGLYVHNCGEQPLPNYTSCNLGSVNLEAFVSSESSGEAVFDMDSFVDQVFRS 519

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V  LD VID   + +E+        R +GLGLMG   A  +L I Y S            
Sbjct: 520 VYYLDLVIDATSYPLERIADRTKMIRPVGLGLMGLADAAIMLGISYGSESFNRFCRSLGG 579

Query: 689 FISFHAISASVELAQE--RGAYSSFK------GSLWDQGVFPIDSIGLLAEVRDELA--- 737
            ++  A++A+V +  E  +  +   +       S   +   P D++    E  DE     
Sbjct: 580 TMASAALAATVRIVSEEGKDPFPEHRLVSELMESFRCEAGLP-DAVDRWLERMDEGGFRE 638

Query: 738 ----MNRTSRLPWD------------------------ELKKRVKTIGMRNSNCMAIAPT 769
               M RT  +P+                         E+ + + +  MRNS  +++APT
Sbjct: 639 LLERMRRTDTVPYTLVNTLEALLSAASVHKGDGMGLVREVLEALFSGRMRNSRRLSVAPT 698

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   S  I+P++   + +  MS   T    +   E   R +  E          G
Sbjct: 699 GSISMLLDASPGIEPNFAWSWSRKVMS--STGDGGYETREYFHRLMTAEHKDE--FRRTG 754

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
            I +             TA++I     +E        +D   S  + L  E +   +  +
Sbjct: 755 GISD---------PRFVTAYDIGTDSHVEVTGIFAAVVDSGISKTVNLPSEATVDDVRRV 805

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           Y   + MG K     R  S +       K  + +   +        
Sbjct: 806 YEDCYRMGCKGITIYRDGSRSDQPIEAKKSDEPEKRHLSSKVKERP 851



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 131/344 (38%), Gaps = 81/344 (23%)

Query: 294 EYLGLQILYDRYFL----HINGSRIE--MPQAFFMRVAMGLALKET-----EKEKR---- 338
                 +L  RY L       G   +    + F  RV+  +A  ET     +        
Sbjct: 30  SENAAWLLDQRYLLSRYDRAEGKVRKEASFEEFARRVSRVIASVETLYVGEDDLNWIRVL 89

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSG--------------------------------TRHP 366
               ++ + +  F+ ++P LF +G                                T   
Sbjct: 90  EKNLFSDILNRRFLFNSPCLFGAGAGMTVDPAMSELIYRSPDDMSYSDYVAVRDGKTESQ 149

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH-GTNGKSQGVI 425
           QL +CF+ +V D + GIF ++++ A+++KY GG+G ++  +R  G+ I  GT GK+ G +
Sbjct: 150 QLFACFVISVEDSIEGIFDSVKDAAVISKYGGGVGGNFGNLREFGSDIKGGTGGKASGPV 209

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F++  N     V QGG+R+ A+   L   H DVE F+D +   G    +    N +  +
Sbjct: 210 SFMETWNTMGSVVVQGGRRRAALMGMLYDDHPDVERFMDAKVEDG----KLPYFNISVSV 265

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D  + +  Q   + L S                           R +  V + + A  L
Sbjct: 266 SDELLTKAAQGGDFHLRS---------------------------RADGSVAKTVKAADL 298

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTE 587
           W K+    +  G P + F D  N+ +  +      + S+N C  
Sbjct: 299 WNKLCRNAWRRGDPGVFFGDRANVDNILKKAPQWRIESTNPCVT 342


>gi|298256075|gb|ADI71316.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Bohle iridovirus]
          Length = 254

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 123/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  K    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWKETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|251771782|gb|EES52357.1| Ribonucleotide reductase [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 42/239 (17%)

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S E +E+A++ M FI   A   S++LA+  G Y  F+G                     
Sbjct: 1   DSEEGLEMAEKVMGFIREEAEKTSLDLAKVHGPYPYFEG--------------------- 39

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                                   RNS+ + IAPT TI+ I   S   +P +  ++ K+ 
Sbjct: 40  -------------------IGSPKRNSHLLTIAPTGTISMIADTSSGCEPEFSIIWYKNV 80

Query: 795 MSGDFTVVN-SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           M G              ++   W + + + +  + GS   + ++P+  ++  ATA +I P
Sbjct: 81  MDGTHLPYTLEMFERVARKEGFWSDDLPALIVENHGSCRGLAQVPEKWQRTFATAHDIAP 140

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            W +   +  QK ID A S  + + E  +   ++  Y  A+ +G K     R  S ++ 
Sbjct: 141 EWHVRMQAAFQKHIDAAVSKTINMPETATIGDVENAYMLAYQLGCKGITVYRDGSRSNQ 199


>gi|451954|gb|AAA16736.1| ribonucleotide reductase large subunit [Human herpesvirus 6]
          Length = 809

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 170/496 (34%), Gaps = 68/496 (13%)

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDE 506
           +  Y+E WH+    +LDL +      R T  +     IP +FM R   + A W+LF  + 
Sbjct: 304 LTVYVEVWHVSALMWLDLYEALPQTSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNI 359

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+  
Sbjct: 360 AFELGKCDEITFSTKYLEFERTTDHA------KITMSSFIEKICLCL-KGGRMGLIFRKN 412

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--------- 617
               S   HV  ++      ++      +    C    +N++    +   D         
Sbjct: 413 VYQYSMIPHV-PLYCGGDFLDVL--PVRDGINTCMRMLLNVVHFLGDEVSDELTEEIDFV 469

Query: 618 --------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                   +++L   +R  V V + VID      +   +     R++G+ + G  S    
Sbjct: 470 RLQCKFFMFNELRRVVRKMVLVANAVIDYAVENKDFLCEGIEDGRSLGICVTGLHSVFMT 529

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
           + + YA P+A  +     E I +  +  SV+   +     + F  S +  G+   D    
Sbjct: 530 VGLSYAHPDARRLYRMICEHIYYTCVRTSVDCCMKGAEPCNLFDRSKYALGMLYFDHFDN 589

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +     E          W  L+K V   G+RN +  A        +I   S+S  P   N
Sbjct: 590 VECTLPEEL--------WTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPMEDN 641

Query: 789 ----------------------LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
                                 +Y     S    V N+ L+N   +   + + +   +  
Sbjct: 642 KILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIPVYNNLLLNRFNKHQQYLKTVGYRVLN 701

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            D ++   + + DDL  +    F      LIE       ++DQ Q+ N++    +     
Sbjct: 702 VDTNLFTDKEL-DDL-AVFKDGFSYHLNDLIEMYKSGLPFLDQGQA-NVFYFNDTVSLRL 758

Query: 887 FIYRQAWLMGLK-TTY 901
            +    +  G K   Y
Sbjct: 759 LLPLL-YKAGFKVAMY 773


>gi|167916608|ref|ZP_02503699.1| hypothetical protein Bpse112_39427 [Burkholderia pseudomallei 112]
          Length = 377

 Score =  168 bits (424), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 147/395 (37%), Gaps = 50/395 (12%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 23  WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYG 82

Query: 595 EETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 83  SAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 138

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 139 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 198

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y               D    L  +R    +          +   ++  G+R+S+  + A
Sbjct: 199 YPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLRHSHLTSFA 239

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           P   ++   G   S  I+P+   +  +   +G        +  E     L+         
Sbjct: 240 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGA--PGMRAENHAHRLFRSLRGERAA 297

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKK 884
                          L    AT  ++ P   +      Q ++D      L   +  S ++
Sbjct: 298 ---------------LPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEE 342

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++ +   AW   LK+    R+  A   + S   GV
Sbjct: 343 VNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 377


>gi|9628330|ref|NP_042921.1| ribonucleotide reductase subunit 1 [Human herpesvirus 6]
 gi|1710386|sp|P52343|RIR1_HHV6U RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|854007|emb|CAA58408.1| U28, RR1 [Human herpesvirus 6]
          Length = 804

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 170/496 (34%), Gaps = 68/496 (13%)

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDE 506
           +  Y+E WH+    +LDL +      R T  +     IP +FM R   + A W+LF  + 
Sbjct: 299 LTVYVEVWHVSALMWLDLYEALPQTSRVTFCL----IIPGIFMDRYELKRAQWSLFHKNI 354

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
             +L       F   Y  +ER  D        KI+  +   K+   L + G   + F+  
Sbjct: 355 AFELGKCDEITFSTKYLEFERTTDHA------KITMSSFIEKICLCL-KGGRMGLIFRKN 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--------- 617
               S   HV  ++      ++      +    C    +N++    +   D         
Sbjct: 408 VYQYSMIPHV-PLYCGGDFLDVL--PVRDGINTCMRMLLNVVHFLGDEVSDELTEEIDFV 464

Query: 618 --------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                   +++L   +R  V V + VID      +   +     R++G+ + G  S    
Sbjct: 465 RLQCKFFMFNELRRVVRKMVLVANAVIDYAVENKDFLCEGIEDGRSLGICVTGLHSVFMT 524

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
           + + YA P+A  +     E I +  +  SV+   +     + F  S +  G+   D    
Sbjct: 525 VGLSYAHPDARRLYRMICEHIYYTCVRTSVDCCMKGAEPCNLFDRSKYALGMLYFDHFDN 584

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +     E          W  L+K V   G+RN +  A        +I   S+S  P   N
Sbjct: 585 VECTLPEEL--------WTTLRKDVLMHGVRNIHFTAGTAMQKEFDIINSSESFWPMEDN 636

Query: 789 ----------------------LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
                                 +Y     S    V N+ L+N   +   + + +   +  
Sbjct: 637 KILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIPVYNNLLLNRFNKHQQYLKTVGYRVLN 696

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            D ++   + + DDL  +    F      LIE       ++DQ Q+ N++    +     
Sbjct: 697 VDTNLFTDKEL-DDL-AVFKDGFSYHLNDLIEMYKSGLPFLDQGQA-NVFYFNDTVSLRL 753

Query: 887 FIYRQAWLMGLK-TTY 901
            +    +  G K   Y
Sbjct: 754 LLPLL-YKAGFKVAMY 768


>gi|298256087|gb|ADI71322.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Pike-perch iridovirus]
          Length = 254

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 123/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|298256089|gb|ADI71323.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Rana esculenta virus]
          Length = 254

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    +   V +LDNVI               +A +S  + R+IG
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAASERSIG 254


>gi|7258400|emb|CAB77447.1| aerobic ribonucleotide reductase [Pectobacterium carotovorum]
          Length = 209

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 7/208 (3%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    D L  I               G+G +   +R LG+ I G      G IPF K  
Sbjct: 1   VLIECGDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHF 60

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
                + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +
Sbjct: 61  QTAVKSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQ 120

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           R+ +    TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  
Sbjct: 121 RLVKGEEITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSL 176

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHV 576
           M+     TG  +I   D CN  SP   +
Sbjct: 177 MMQERASTGRIYIQNVDHCNTHSPFDPL 204


>gi|298256085|gb|ADI71321.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 254

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 123/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWRKTDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|298256077|gb|ADI71317.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Cod iridovirus/15/04.11.92/DNK]
          Length = 254

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 123/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWRKTDLVECLVEMLDNVIQTFVDEAPLRTPHTARAVRSAAGERSIG 254


>gi|298256079|gb|ADI71318.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European catfish virus]
 gi|298256083|gb|ADI71320.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European sheatfish virus]
          Length = 254

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 122/292 (41%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLVEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P                               V   +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSG---------------------------AVTHTVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIMGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWRETDLVECLVEMLDNVIQTFVDGAPLKTPHTARAVRSAAGERSIG 254


>gi|316956309|gb|EFV46789.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 178

 Score =  166 bits (419), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/136 (41%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+   + +    A
Sbjct: 1   RLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIHEDDIDA---A 57

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398
           +E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+E A+++K +G
Sbjct: 58  IETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLKECAIISKSAG 117

Query: 399 GLGNDWTPVRGLGAHI 414
           G+G +   +R  G +I
Sbjct: 118 GIGLNVHCIRASGTYI 133


>gi|298256081|gb|ADI71319.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 254

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 123/292 (42%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   VPDTIEGLVDHTSELRWLSVMGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P   +  H                            +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSGAVAH---------------------------TVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L ++++ TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             +++  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYNEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|298256091|gb|ADI71324.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Short-finned eel ranavirus]
          Length = 254

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 121/292 (41%), Gaps = 50/292 (17%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           +PD + G+     E   L+   GG+   W  VRG  A       KS G IPFL   +   
Sbjct: 3   IPDTIEGLVDHTSELRWLSVRGGGVAGHWDDVRGPSA-------KSCGTIPFLHTVDADM 55

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    + D FM+ V +
Sbjct: 56  SAYWQGKVRRGSYAAYMSVSHPDLIEFITMRTPTGDVNRKNLNLHHGVNVTDAFMRCVER 115

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W L  P                               V   +SA  LW ++L   F 
Sbjct: 116 GENWDLVDPKSG---------------------------AVTHTVSARELWERILETRFR 148

Query: 556 TGHPWITFKDPCNI--RSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ F D  N       +  G  +  SNLC EI L +S + TAVC L S+NL     
Sbjct: 149 TGEPYLNFIDAANRGLHPALKRKGLRIRGSNLCNEIHLATSEDRTAVCCLSSVNL----- 203

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE-------KAKKSNHTHRAIG 657
             ++D  +    I   V +LDNVI               +A +S    R+IG
Sbjct: 204 -ERYDEWRGTDLIECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|213583962|ref|ZP_03365788.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 208

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 91/204 (44%), Gaps = 8/204 (3%)

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
               G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   
Sbjct: 2   SQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPM 61

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH++VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L+D +
Sbjct: 62  WHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGLYDAF 121

Query: 515 G---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D CN  S
Sbjct: 122 FADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHCNTHS 177

Query: 572 PQ-QHVGVVHSSNLCTEITLNSSS 594
           P    V  V  SNLC EI L +  
Sbjct: 178 PFDPVVAPVRQSNLCLEIALPTKP 201


>gi|213021498|ref|ZP_03335945.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 194

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 7/198 (3%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +R LG+ I G      G IPF K
Sbjct: 1   SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYK 60

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                  + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L 
Sbjct: 61  HFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLM 120

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+
Sbjct: 121 YTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELF 176

Query: 547 RKMLTMLFETGHPWITFK 564
             M+     TG  +I   
Sbjct: 177 SLMMQERASTGRIYIQNV 194


>gi|229138138|ref|ZP_04266736.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|228645483|gb|EEL01717.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
          Length = 246

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 13/248 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFLDLRK 467
            EFLD +K
Sbjct: 239 IEFLDTKK 246


>gi|165870353|ref|ZP_02215008.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167634338|ref|ZP_02392659.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|167639266|ref|ZP_02397538.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|170686841|ref|ZP_02878061.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|170706345|ref|ZP_02896806.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|177651553|ref|ZP_02934342.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190568126|ref|ZP_03021036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035396|ref|ZP_03102801.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218902558|ref|YP_002450392.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227815801|ref|YP_002815810.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228926481|ref|ZP_04089553.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932733|ref|ZP_04095605.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120990|ref|ZP_04250232.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229603385|ref|YP_002865864.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
 gi|164713848|gb|EDR19370.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167512705|gb|EDR88079.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|167530226|gb|EDR92952.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|170128879|gb|EDS97745.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|170669364|gb|EDT20107.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|172082831|gb|EDT67894.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190560860|gb|EDV14835.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992073|gb|EDX56036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218535235|gb|ACK87633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227003555|gb|ACP13298.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228662650|gb|EEL18248.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826938|gb|EEM72700.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833305|gb|EEM78870.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229267793|gb|ACQ49430.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
          Length = 243

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 13/244 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFL 463
            EFL
Sbjct: 239 IEFL 242


>gi|254966981|gb|ACT97524.1| putative ribonucleotide reductase [uncultured organism]
          Length = 279

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 112/296 (37%), Gaps = 39/296 (13%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETE 334
           ++ Y       ++ F  + L   +   +Y L  + G   E  P+    R+A  +   E +
Sbjct: 12  EVSYNEAVEASKKYFDGDDLAATVWVSKYALKDSYGHIYEKTPRDMHERIAAEIERIEKK 71

Query: 335 KEKRAV--EFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGA 386
                   E + LL  F ++       T   +  +   LS+CF+       D   GIF  
Sbjct: 72  YPNPMNRQEVFELLDHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRM 131

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++   V Q G R+G
Sbjct: 132 DEEQVQLMKRRGGVGHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTREVAQDG-RRG 190

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+   L   H D E F+D +     D  +    N +  I D FM+       +    P  
Sbjct: 191 ALMLTLSIKHPDAERFIDAK----VDTSKVTGANVSVKIDDEFMRAALAGKKYHQQFP-- 244

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                                     +    + I A  LW K++   +++  P + 
Sbjct: 245 ----------------------IHSDKPLYQQDIDAKKLWDKIIHNAWKSAEPGVM 278


>gi|49184284|ref|YP_027536.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Sterne]
 gi|49477194|ref|YP_035575.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318720|ref|ZP_00391679.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|254682486|ref|ZP_05146347.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726149|ref|ZP_05187931.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733902|ref|ZP_05191616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740408|ref|ZP_05198099.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753799|ref|ZP_05205834.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758894|ref|ZP_05210921.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49178211|gb|AAT53587.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. Sterne]
 gi|49328750|gb|AAT59396.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 255

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 13/244 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEEVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 250

Query: 460 EEFL 463
            EFL
Sbjct: 251 IEFL 254


>gi|308172803|ref|YP_003919508.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605667|emb|CBI42038.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 264

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 22/269 (8%)

Query: 209 LIEKEPNYAKVTARFLL-----EKLRRE-----VLTTVYKKPQKATHHEMQCLYPEYFCR 258
           L  K  +Y ++    ++      +  ++          Y        H+++         
Sbjct: 3   LTNKHASYIELNNEIMIQKDGRFQFEKDIEAVRAYFIDYVNQNTVFFHDLREK-----LD 57

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING--SRIE 315
           Y+ +             FD +       Y   F F  ++     Y+ Y L  N     +E
Sbjct: 58  YLRDNDYYETEFLDAYTFDEIKAVYQAAYAHKFRFPSFMSAFKFYNDYALKTNDGKKILE 117

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLT 374
             +    RV++           +A+E+ +L+    +  STPT  N+G  R  +L SCFL 
Sbjct: 118 RYED---RVSIVALFFGGGDVAKAIEYVDLMMRQEYQPSTPTFLNAGRKRRGELVSCFLL 174

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++ 
Sbjct: 175 EVGDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNA 234

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
               +Q G+R+G+  AYL  +H D+ +FL
Sbjct: 235 FRYADQMGQRQGSGAAYLNVFHADINDFL 263


>gi|194015138|ref|ZP_03053754.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012542|gb|EDW22108.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 262

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
                Y        H+++         Y+ +             F+ +       Y   F
Sbjct: 34  AYFIDYVNQNTVFFHDLKEK-----LDYLRDNDYYETEFLDAYTFEEIKAVYKTAYAAKF 88

Query: 292 AF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F  ++     Y+ Y L  N     +E  +    R+A            +A+EF  L+  
Sbjct: 89  RFPSFMSAFKFYNDYALKTNDRKKILERYED---RIACCALYFGKGDGAKAIEFAKLMIR 145

Query: 349 FHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G  R  ++ SCFL  V D L  I  A+  +  L+K  GG+  + + +
Sbjct: 146 QEYQPATPTFLNAGRKRRGEMVSCFLLEVNDSLNDISRAIDISMQLSKSGGGVSLNLSKI 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           R  G  I    G ++GV+  +K+ ++     +Q G+R+GA  AYL  +H D+ +FL
Sbjct: 206 RAKGESIKDVAGATKGVVGVMKLLDNAFRYADQMGQRQGAGAAYLNVFHADINDFL 261


>gi|228957723|ref|ZP_04119467.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801966|gb|EEM48839.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 243

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 13/244 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVAERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFL 463
            EFL
Sbjct: 239 IEFL 242


>gi|2760640|dbj|BAA24243.1| P25 [Leucania separata nuclear polyhedrosis virus]
          Length = 222

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL T+  D + GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L
Sbjct: 19  SCFLLTMESDSIRGIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPML 78

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +V N+    V +    K      L     D+ + L +R+N G +  +  D+  A W+PD+
Sbjct: 79  RVFNNMVRHVIKVASEKAPKQCTLNRGIGDIMDVLHMRRNIGSEDTKARDLMNALWVPDI 138

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +N  W+L  P+E   L+D YG +FE  Y++YE +    E     ++ AV L R 
Sbjct: 139 FMKRVEENGIWSLMCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRN 193

Query: 549 MLTMLFETGH 558
           ++ +  ET H
Sbjct: 194 IIEIQAETAH 203


>gi|229108907|ref|ZP_04238511.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674563|gb|EEL29803.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
          Length = 243

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 13/244 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T         E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENT--VPFNSVEERMEYMKEHDYYYNVLDEYSLEE--VEEVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVSK---AR 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDI 238

Query: 460 EEFL 463
            EFL
Sbjct: 239 IEFL 242


>gi|297562264|ref|YP_003681238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846712|gb|ADH68732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 1779

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 13/263 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L+   F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 112 GYFASAEDAEVFDHELKHALAHQLFSFNSPVWFNVGTNSKAQVSACFILSVDDTMESILD 171

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 172 WYKEEGIIFKGGSGAGVNLSRIRSS-KELLSSGGTASGPVSFMRGADASAGTIKSGGATR 230

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFS 503
           + A    L+  H D+E+F++ +       R   D      +  D       QNA  ++  
Sbjct: 231 RAAKMVVLDVDHPDIEDFVETKAREEHKIRALRDAGFDVDLGGDDMFSVQYQNANNSVRV 290

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            D      +  G +F +          R   +V   + A  L+++M    +E   P I +
Sbjct: 291 SDAFMRAVES-GSDFGLTS--------RTTGEVVATVDAKELFQRMARAAWECADPGIQY 341

Query: 564 KDPCNIRSPQQHVGVVHSSNLCT 586
                        G + +SN C 
Sbjct: 342 DGTIQDWHTTPESGRISASNPCF 364



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 23/257 (8%)

Query: 569  IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRT 627
                    G V ++  C+E      S     CNL SINLL     ++ FD ++  +    
Sbjct: 751  RNHSYIVGGTVVAN--CSEYMSLDDSS----CNLASINLLKFLREDDTFDVERFTALTEL 804

Query: 628  AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
             +  +D  I       EK  ++   +R +G+G     + L      Y S     +A    
Sbjct: 805  VITAMDVSITFADFPTEKIGETTRAYRQLGIGYANLGALLMATGHAYDSEGGRAVAAAVT 864

Query: 688  EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSR 743
              ++  A   S ELA   G Y  ++ +                ++R     E  ++  + 
Sbjct: 865  SLMTGTAYRRSAELAGVVGPYDGYRRNERAHKRVMRKHAAANDDLRTVGTLEEPIHAAAT 924

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIA------------NICGVSQSIDPSYQNLYV 791
              W E  +  +  G RN+    +APT  +              +  +  +  P +Q+L  
Sbjct: 925  REWAECLRIGERNGWRNAQASLLAPTGCLTGDSMVTTDRGLVRLTELGDAYGPRWQDLSA 984

Query: 792  KSNMSGDFTVVNSFLVN 808
            + +          F VN
Sbjct: 985  RVSTDEGPREATRFFVN 1001



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 771  TIANICGV-SQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-- 826
            TI  +    +  I+P +  +  K     G   +VN  +   L      DE + + ++Y  
Sbjct: 1382 TIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQAIPRALGNLGYQDEQIEAVVEYVS 1441

Query: 827  HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
             +G + +   +  +  ++   A     I PM  +   +  Q ++  A S  +   +E S 
Sbjct: 1442 ENGHVVDAPGLRAEHYEVFDCAMGLRYIRPMGHVRMMAAVQPFLSGAISKTVNVPEEASV 1501

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST----LKGVDGKLNAVPVTDPNSSTHSL 938
            +  + IY + W MGLK     R         ST     K    +  AV    P       
Sbjct: 1502 EDFEHIYFEGWRMGLKALAVYRDNCKVGQPLSTGGTREKEAGPEAEAVEAPRPVRRRLPK 1561

Query: 939  GIPSSCTS 946
              PS  TS
Sbjct: 1562 KRPSETTS 1569


>gi|168056527|ref|XP_001780271.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668325|gb|EDQ54935.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLKKI+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVD 60

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+   K T+ 
Sbjct: 61  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTMD 120

Query: 918 GV---DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
                  +     V   N       +  S  +  EC  
Sbjct: 121 QSSIKSKQETPAAVVSNNLEEKMSQMVCSLENKDECMS 158


>gi|78188679|ref|YP_379017.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            chlorochromatii CaD3]
 gi|78170878|gb|ABB27974.1| ribonucleotide reductase family protein [Chlorobium chlorochromatii
            CaD3]
          Length = 1513

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 596  ETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+            ++L         VL+  + +     +   + ++  
Sbjct: 831  DDTACNLASLNLIHFVDEASGTIKINELRHAASLWTVVLEISVLMAHFPSQTIARLSYDF 890

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +GLG     + L +L IPY S EA+ +A      ++  A   S E+A++ G +  +  
Sbjct: 891  RTLGLGFANLGTVLMVLGIPYDSAEALAMAGAIASLMTGQAYVTSAEMARDLGTFKRYSD 950

Query: 714  S------------LWDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKT 755
            +               Q     D  GL      +     + A+   +   W+E+ ++ + 
Sbjct: 951  NANDMLRVMRNHRRAAQNAATTDYEGLSVIPHGINAAHCQTALAEAAGAVWNEVLQKGEA 1010

Query: 756  IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G RN+    IAPT TI  +    +  I+P +  +  K    G +  + +  V++   R 
Sbjct: 1011 HGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALLRL 1070

Query: 815  LWDEAMISDLKYHDGSIGNIERIPD 839
             +    I D++ +    G +E  P 
Sbjct: 1071 GYSAEQIEDIERYCKGHGTLEGCPA 1095



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 118/341 (34%), Gaps = 71/341 (20%)

Query: 317 PQAFFMRVA-MGLALKETEKEKRAVEF-----YN----LLSSFHFMCSTPTLFNSG--TR 364
            QAF+  VA M LA        +         Y         F+   +T  +  SG    
Sbjct: 117 AQAFYDEVAFMILAQMGAPNSPQWFNTGLNFAYGTTGPAQGHFYVDPATGEVTESGDAYS 176

Query: 365 HPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
            PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G    S
Sbjct: 177 RPQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTNYSSLRSSGEKLSGGGSSS 236

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR------ 474
             ++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D         
Sbjct: 237 G-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASLVAGS 295

Query: 475 -------------------------RTHDM---NTANWIPDLFMKRV-------TQNAGW 499
                                    R   +     +  +P  ++ RV         +  +
Sbjct: 296 RICSRFLQAIVEEALANGADRKTNPRLQQLIQNALSRGVPMSYVIRVLALVEQGYTSLDF 355

Query: 500 TLFSPDEVSDLHDLYGK-----------EFEIAYENYE--RQADRGEIKVFRKISAVALW 546
             +     S+ +   G             F +A  N E      R   KV R + A  LW
Sbjct: 356 NEYDTHYESEAYQTVGGQNSNNTVRVTNAFMLAVANDEVWELRQRTTGKVSRVVKARELW 415

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            K+L   ++   P + F    N        G +++SN C  
Sbjct: 416 EKILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCVT 456



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 830  SIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             I     +  +   +   A          I     I   +  Q +I  A S  + +    
Sbjct: 1178 MIEGAPHLQPEHLAVFDCASKCGKKGKRYIRHQAHINMMAAVQPFISGAISKTVNMPATA 1237

Query: 881  SGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  ++  +YR AW   +K     R  S  S 
Sbjct: 1238 TTAEIGNVYRDAWQQMVKAVTIYRDGSKLSQ 1268


>gi|62996796|gb|AAY24448.1| ribonucleoside-diphosphate reductase large chain [Popillia japonica
           iridescent virus]
          Length = 225

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 24/245 (9%)

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             S G +P L   +   +A  Q G R+G+   YL+  H ++  FL++RK+TGD   R  +
Sbjct: 1   NTSCGPMPHLHTYDSCCLAYKQDGVRRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLN 60

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           ++    I D FM+ + +       + D+  +L D + KE                  V  
Sbjct: 61  LHHCINITDKFMELIERCTKEK--NVDDTWNLIDPHSKE------------------VTD 100

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
           KISA  LW+++L    +TG P+I F D CN       V     +  SNLC E+ L + S 
Sbjct: 101 KISAKELWQRILETRLKTGEPYICFIDTCNKGMYDFQVEKGLSIKQSNLCVEVVLPTDST 160

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            TAVC L S+NL  H+   + D   +   +      L   I+     IE+A  S    R+
Sbjct: 161 RTAVCCLSSLNL-EHYDEWKDDPLFIKDVMEMLDNALTIFIENAPKRIERAVNSAKKGRS 219

Query: 656 IGLGL 660
           IG+G+
Sbjct: 220 IGIGV 224


>gi|196229990|ref|ZP_03128854.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
 gi|196226316|gb|EDY20822.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
          Length = 159

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/165 (44%), Positives = 101/165 (61%), Gaps = 11/165 (6%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSG+F   N  L+ EL+ R LWDE M++DLKY DGS+  I+R+P +LK+++ TAFEI P 
Sbjct: 1   MSGEFIRTNDHLLRELQNRGLWDEEMLADLKYFDGSVQQIDRVPAELKRLYKTAFEIAPT 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W+++ A+ RQKWIDQAQS NL+L E   +   F+YR+AW  GLKTTYYLR+     + KS
Sbjct: 61  WILQCAAARQKWIDQAQSTNLWLAESDARTASFMYREAWERGLKTTYYLRT-----LNKS 115

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-----TECEVCQ 954
            +   +    A    +P    +S     SC+ +       CE CQ
Sbjct: 116 AIDSSNRDRRATTAPEPKRE-YSAEEKQSCSIEAMRNGGTCEACQ 159


>gi|168055674|ref|XP_001779849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668761|gb|EDQ55362.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 160

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 5/158 (3%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLK I+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLK-IYRTVWEIKQRSIVD 59

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+   K T+ 
Sbjct: 60  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTVD 119

Query: 918 GV---DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
                  +     V   N       +  S  +  EC  
Sbjct: 120 QSSIKSKQETPAAVVSNNLEEKMSQMVCSLENKDECMS 157


>gi|896309|gb|AAA69767.1| unknown protein [Mamestra brassicae MNPV]
          Length = 216

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 22/225 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K  +Y  +  R L+  + + V  +  K  Q+   H +              
Sbjct: 61  ASVAATLTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQELHKHNL-------------- 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   LL  ++    ++    ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 107 -VSDELLSVTIKHSKIIE--ENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAETIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           R+A+G+   + +    A++ Y  LS   +  ++PT+F +GT  PQ
Sbjct: 164 RIALGIFGDDID---SAIKSYKFLSRKMYTHASPTMFAAGTLTPQ 205


>gi|78186460|ref|YP_374503.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            luteolum DSM 273]
 gi|78166362|gb|ABB23460.1| ribonucleotide reductase family protein [Chlorobium luteolum DSM 273]
          Length = 1521

 Score =  147 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 25/266 (9%)

Query: 596  ETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+            ++L         VL+  + +         + ++ +
Sbjct: 831  DNTACNLASLNLIHFVDEESGHVKINELRHAAALWTVVLEISVLMAHFPSPDIARLSYEY 890

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +GLG     + L +L IPY SP+A+ +A      I+  A   S E++++ G +  ++ 
Sbjct: 891  RTLGLGFANLGTVLMVLGIPYDSPKALALAGAISAIITGQAYVTSAEISRDLGPFDGYQA 950

Query: 714  S------------LWDQG-------VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +               +           +   G+ +E   +  +   +   WDE  ++ K
Sbjct: 951  NSKEMLRVIRNHRRAARNESEEEYEELSVKPRGIDSEYCPK-ELFEAAGSVWDEALQKGK 1009

Query: 755  TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQ 812
              G RN+    IAPT TI  +    +  I+P +  +  K    G +   VN  +   LK+
Sbjct: 1010 KYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALKR 1069

Query: 813  RDLWDEAMISDLKYHDGSIGNIERIP 838
                 + +    KY  GS G++E  P
Sbjct: 1070 LGYAAQEIEEIEKYCKGS-GSLEGCP 1094



 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 119/346 (34%), Gaps = 77/346 (22%)

Query: 315 EMPQAFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL--------------F 359
           E  +AF+  VA M +A +      +    +N   +F +  + P                 
Sbjct: 115 EDAEAFYDEVAYMLIAQQGAPNSPQW---FNTGLNFAYGITGPAQGHYHVDPATKKVVES 171

Query: 360 NSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
                 PQ  +CF+ +V DDL    GIF      A + K+  G G +++ +R  G  + G
Sbjct: 172 EDAYTRPQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLRSSGEKLSG 231

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               S  ++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D    
Sbjct: 232 GGSSSG-LMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAREEDKVAS 290

Query: 476 T------------------------------------HDMNTANWIPDLFMKRVTQNAGW 499
                                                + ++ A  +  +         G+
Sbjct: 291 LVAGSRICSRFLQAIVEEAILNGADRLENPKLQRLIENALHRAVPMSYIIRVLALVEQGY 350

Query: 500 TLFSPDEV-----SDLHDLYGK-----------EFEIAYENYE--RQADRGEIKVFRKIS 541
           T    +E      S+ +   G             F  A EN E     +R   K  R ++
Sbjct: 351 TTLDFEEYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENNELWMLKERTTGKTARAVN 410

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           A  LW K+L   ++   P + F    N        G +++SN C  
Sbjct: 411 ARELWEKILLSAWKCADPGLQFDTTINEWHTCPAAGRINASNPCVT 456



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 851  IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            I+ M  +   S  Q +I  A S  + +    +  ++  +Y   W   +K     R  S  
Sbjct: 1207 INHMAHVRMMSSVQPFISGAISKTVNMPATATTAEIGEVYLSGWQHMVKAITVYRDGSKL 1266

Query: 910  SV 911
            S 
Sbjct: 1267 SQ 1268


>gi|9845337|ref|NP_064151.1| pR45 [Murid herpesvirus 2]
 gi|9800270|gb|AAF99144.1|AF232689_37 pR45 [rat cytomegalovirus Maastricht]
          Length = 1064

 Score =  147 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 116/637 (18%), Positives = 206/637 (32%), Gaps = 95/637 (14%)

Query: 335  KEKRAVEFYNL----LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF---GAL 387
            + + A+E +      L SF  +     + ++G R        +   P  +       G++
Sbjct: 448  RPRGALEVFEAVLSALCSFAVVLPPQVMAHAGLRGGLPLFEGVAYRPRGVAVEGTWNGSM 507

Query: 388  QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            Q    L      +    + +           G   G++    +   +     +   +   
Sbjct: 508  QNVCDLLANGVSVSVQLSDL----------LGDVAGILKSFGLFCASLRDHRRFDTK--- 554

Query: 448  VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ---NAGWTLFSP 504
            +   ++ W +D+          G   R   ++  A  +P  F +R  +   +  W +F  
Sbjct: 555  LRVVVDLWSVDLVYAFSFILGEG---RAYPELLYAVNVPQFFWERYVEEGASGRWQVFQK 611

Query: 505  DEVSDLHDLYGKEFEIAYENYERQADR---GEIKVFRKISA-VALWRKM------LTMLF 554
             E   L  +  K F  AYE  E + +        V R + A VAL          L    
Sbjct: 612  SECKSLCRVDEKGFRTAYERLELEGNGLSLSPWWVVRHLDACVALGNTAVVYPYNLKSAM 671

Query: 555  ETGHPWITFKDPCNIRSPQQHVGVVHSS--NLCTEITLNSSSEETAVCNLGSINLLAHFA 612
                  +    P         +GV   +  ++C E  L   S            +     
Sbjct: 672  VGETGRLLLCGPELSLVCNSFLGVFPENKIDVCLENCLLEGSGADDAAAATEGEVPVLGH 731

Query: 613  NNQFDYDKLASTIRTAVRV----LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               F +  L   +R AV +    +D VI  N      A      +R + L ++GF + L 
Sbjct: 732  EVFFSFRSLRVLVRDAVVIGNVLMDAVIRDNVF---GAGDVMCLYRPLQLRVLGFHAVLG 788

Query: 669  LLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y    +V +     EF+ + A+ ASV+L       +  F  SL+  G    D   
Sbjct: 789  RLGLLYTDDASVLLGRRIAEFVHYAAVRASVDLCVHGAEPFPKFSRSLFATGRLYPDLF- 847

Query: 728  LLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                   +  +  TS LP   W +L++ V   G+RNS  +        AN+ G +  + P
Sbjct: 848  -------DDPLQETSSLPAGHWAQLREDVVRYGVRNSAFVCGGLGEESANVAGTTPGMFP 900

Query: 785  SYQNLYV---------KSNMSGDFTVVN--------------------------SFLVNE 809
               NL +         +    G+   V                             +   
Sbjct: 901  RAYNLSLEPSPLLAAPRDRCLGEALRVAEDLRLDLPNASDRSLLALVGNQRVYLPVVNRY 960

Query: 810  LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            L +       +   + Y  G    +E   D+ +    T +      +++ A  RQ ++DQ
Sbjct: 961  LAEIPRSRAVLAVRMGYAAGLYAGVEEE-DEDRASLETGWMTSQEAVLKMAVDRQPYVDQ 1019

Query: 870  AQSLNLYLDE-PSGKKLDFIYRQAWLMGLK-TTYYLR 904
             Q L L+L    S   +    R+A   GL    Y  R
Sbjct: 1020 GQGLPLFLGSGRSMVDVARHLRRAGAAGLGIGLYKCR 1056


>gi|48429400|gb|AAT42468.1| NrdA [Escherichia coli B]
          Length = 182

 Score =  147 bits (371), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 35/211 (16%)

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+  
Sbjct: 1   AKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYK 60

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  +   N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 61  KDL----DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 116

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V         +       ++ ++  +DG +                
Sbjct: 117 YVSIKASKDGILRQVVPDY-----EHLHDAYELLWEMPGNDGYLQ--------------- 156

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           QK+IDQ+ S N   D
Sbjct: 157 -----------LVGIMQKFIDQSISANTNYD 176


>gi|51556532|ref|YP_068166.1| rh72 [Macacine herpesvirus 3]
 gi|31377949|gb|AAP50599.1| rh72 [Rhesus cytomegalovirus strain 68-1]
 gi|73695699|gb|AAZ80573.1| rhUL45 [Macacine herpesvirus 3]
          Length = 849

 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 210/672 (31%), Gaps = 77/672 (11%)

Query: 276 FDLVYLANDLKYERDFA--FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            DL  +  D+    D A  + + G  +L D+    I G   E     F+R++M + L   
Sbjct: 208 EDLPKILADITRYLDLAGCWGFYGAIVLTDKVSRQIYGQD-ESLGGIFLRISMAITLAIV 266

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
                 V  +++            +         L+   ++ +       +  L    + 
Sbjct: 267 SSPCARVYRFHMDCRHECEVLESVVKRCRDGQLSLTPFSMSNIGFVELPQYDYLISCDLY 326

Query: 394 AKYSGGLGN------DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++    L        + T    L  ++   N ++  VI  +    D      +    +  
Sbjct: 327 SREVDWLALHKWLYENLTRGVSLSINVTRFNVEAISVIRCIGGFCDMIR---EKEVHRPI 383

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           V  +++ W +     L+      D       ++ A  IP + MKR              V
Sbjct: 384 VRIFVDLWDVAAIRVLNFVLKETD----IIGIHYAFNIPSVLMKRYRAQDSHYSLFGRTV 439

Query: 508 SDLHDLYGKEF--EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           S      G EF  E  Y  YE    +        + A    R ML      G   + F  
Sbjct: 440 SRKLSECGNEFAFEKEYVRYETTVPKV------TVKASEFMRNMLFCAL-KGKCALVFVH 492

Query: 566 PCNIRSPQ-------QHVGVVHSS-------------NLCTEITLNSSSEETAVCNLGSI 605
                S           +G   +S             ++     L + +++  +C     
Sbjct: 493 HIVKYSVLTGNMPLPPCLGPDMASCHFGESDLPLQRLSINLTRCLFTRTDDDVLCRD--- 549

Query: 606 NLLAHFANNQFDYDKLASTIRTAV----RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           N++       FD   L + +  AV      LD +I      +E A       R++ +G+ 
Sbjct: 550 NVVLGNTRRYFDMQVLRTLVTEAVVWGNARLDALIRSGDWPLESA---ICKMRSLNIGVT 606

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
           G  + L  L   Y    + ++ +   E + + A+  SV+L +        F  +++ +G 
Sbjct: 607 GLHTVLMRLGFTY--FASWDLIERIFENMYYAALRTSVDLCKSGLPPCEWFDRTIYKEGK 664

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  +                     W+ L+  ++  G+RN+  ++IA     A +  V+ 
Sbjct: 665 FIFELYRKPHLSLPVA--------QWETLRTEMQEYGVRNAQLLSIAADEETAFLWNVTP 716

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI------GNI 834
           SI  +   +  +  +       +      + Q+ L    +      H   +         
Sbjct: 717 SIWAARDRIVDEETVLPVSPPSDECYFPTVMQKHLKVPIINYAWIEHHDEVKAKSITQGT 776

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
            +  D    +   A E+     +E AS     ++DQ   L  Y +      L       W
Sbjct: 777 VQRADVPSCVFQRAAEL--QADVEMASVNVSMFVDQCVPLPFYYESSMTPDLLMKRMLKW 834

Query: 894 -LMGLK-TTYYL 903
             +  K   Y  
Sbjct: 835 YHLRCKVGVYKY 846


>gi|213421653|ref|ZP_03354719.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 152

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           N  + E A+C L + NL A         D+L      AVR LD ++D   + I  AK+  
Sbjct: 3   NDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGA 57

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   
Sbjct: 58  MGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPW 117

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           F  + + +G+ PID+         +  +N      W++L
Sbjct: 118 FNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWEQL 152


>gi|167821508|ref|ZP_02453188.1| hypothetical protein Bpse9_40698 [Burkholderia pseudomallei 91]
          Length = 263

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 113/272 (41%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 11  WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYG 70

Query: 595 EETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 71  SAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 126

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 127 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 186

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y              +D++ +   +   +                ++  G+R+S+  + A
Sbjct: 187 YPLCDRHA------HLDALRVGPPLPHAVCHA-------------IERDGLRHSHLTSFA 227

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 228 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 259


>gi|167899958|ref|ZP_02487359.1| hypothetical protein Bpse7_39915 [Burkholderia pseudomallei 7894]
          Length = 251

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 3   WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYG 62

Query: 595 EETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 63  SAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 118

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 119 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 178

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y               D    L  +R    +          +   ++  G+R+S+  + A
Sbjct: 179 YPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLRHSHLTSFA 219

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 220 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 251


>gi|167744304|ref|ZP_02417078.1| hypothetical protein Bpse14_39918 [Burkholderia pseudomallei 14]
          Length = 287

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 6   WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPYG 65

Query: 595 EETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N        +FD+    + +R  VR+LDN +D+    +    
Sbjct: 66  SAM----LGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 121

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 122 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLCHHAYAASAELAAERGA 181

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y               D    L  +R    +          +   ++  G+R+S+  + A
Sbjct: 182 YPLC------------DRHAHLDALRAGPPLPH-------AVCHAIERDGLRHSHLTSFA 222

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 223 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 254


>gi|213159194|ref|YP_002321238.1| gp45 [Caviid herpesvirus 2]
 gi|212598199|gb|ACJ35827.1| GP45 [Caviid herpesvirus 2]
 gi|324039490|dbj|BAJ78512.1| GP45 [Caviid herpesvirus 2]
          Length = 929

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 103/612 (16%), Positives = 193/612 (31%), Gaps = 78/612 (12%)

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M L L+     +  +  Y+L     F       F  G        C   TV   L     
Sbjct: 342 MYLFLERLCLRRLCLPNYSL-----FGLGLRDQFFVG---GFSCRCAEQTVSSYLDKN-- 391

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA--VNQGGK 443
            +QE  +  +    +  + T  RG G              P LK+A+  +    +    +
Sbjct: 392 -VQEMLLFMRKGTAVSINVT--RGAGD-------------PLLKIAHMASQLQIIRTTQR 435

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG-WTLF 502
            +  +  Y ++W       LD   +  ++            +  LF       +G W L+
Sbjct: 436 VRSRLRIYFDSWSWHATGILDYILSLDEEVFSGLSFGINV-VSALFDAISPNGSGTWALW 494

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           + D  S        +F    +     AD     V   +SA     K+   +  TG   + 
Sbjct: 495 NFDWCSSFSKENMDQFVSRLKRARPAADNERCIV---VSARWFCEKIAQCVL-TGRLAVV 550

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------- 613
           + +  +  S    +              N  S ET      S+NL    A+         
Sbjct: 551 YPENVHNHSVLNDLYQPIQCLGPGVNFENPFSRETLPVVSVSVNLEECVADVVPDCMHDN 610

Query: 614 ----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIE-KAKKSNHTHRAIG---LG 659
                        D   L   +  AV   + ++D        ++ K     R      + 
Sbjct: 611 EMMYIYASSDWAIDSAHLRMLVEHAVVCGNAMLDSMIKNCGGESSKLAERFRRFAALAVN 670

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQ 718
           + GF  AL  L + Y S EAVE+  +  E + + A+  S+ L +    A + F  +++ +
Sbjct: 671 VTGFHKALMKLDVEYDSNEAVELCRKIHEHVYYEALKTSMSLCRAGASACTWFGRTMYAR 730

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM-AIAPTATIANICG 777
           G+   D   +                 W  L++ +   G+RN+       P   +  +  
Sbjct: 731 GIMMFDRYSVTP--------TSVPTKHWIVLRQNIMRHGLRNAFITSCQDPEDGVCLMTE 782

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S SI P  +N Y+   +              + +R   D   +     ++  I    R+
Sbjct: 783 GSVSILPILKNHYISHALIPRVEGFREEGFCHIDRRAGEDVPFVGIPVVNNLLIREEPRV 842

Query: 838 PDDLKK----------IHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYLDEPSGKKLD 886
              +            I   AF+I    ++   +    ++DQ  + +    D      + 
Sbjct: 843 QMAVSDRKWGVSDRTCIFRDAFDIGMDRVLAMCAAASPFVDQVVAPSFCVQDGDGVGAIL 902

Query: 887 FIYRQAWLMGLK 898
              ++A+ + LK
Sbjct: 903 EALKRAYDLRLK 914


>gi|213609532|ref|ZP_03369358.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 208

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 21/216 (9%)

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++ 
Sbjct: 2   SGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSL 61

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
              IPD+  +   +NA   LFSP ++   +     +  I+    E  AD    K +  I+
Sbjct: 62  GVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTY--IN 119

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL----------- 590
           A   ++ +  + FE+G+ +I F+D  N  +     G ++ SNLC+EI             
Sbjct: 120 ARDFFQTLAEIQFESGYLYIMFEDTVNRAN--PIAGRINMSNLCSEILQVNSASRYDDNL 177

Query: 591 -NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             +       CNLGS+N+      +  D   +  T+
Sbjct: 178 DYTHIGHDISCNLGSLNIA-----HVMDSPDIGRTV 208


>gi|213419184|ref|ZP_03352250.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 205

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 43/232 (18%)

Query: 699 VELAQER-GAYSSFKGSLWDQG-----VFPIDSIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+ER   ++ F  S +  G         D     A+VR   A   +   +R  W +L
Sbjct: 1   MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 60

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 61  RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 120

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           E                                  ++  A++I P  +I++ +   + +D
Sbjct: 121 E-------------------------------NLDMYQDAYDIGPEKIIDTYAEATRHVD 149

Query: 869 QAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           Q  SL L + D  + + ++     AW  G+K+ YY+R R    +E + ++G 
Sbjct: 150 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQLA-LESTEIEGC 200


>gi|328553044|gb|AEB23536.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 240

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 16/244 (6%)

Query: 209 LIEKEPNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +    P + K+    ++        +  +E + + +             L  +       
Sbjct: 1   MTNTIPKWIKLNNEIMIQKDGKFQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKN 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQ 318
           +  +   L E    F+ +     + Y   F F  ++     Y+ Y L  N     +E  +
Sbjct: 61  DYYEEEFLSEYT--FEQIKSIFKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
                VA+  A  + +K   A+E  + +    +  +TPT  N+G  R  ++ SCFL  V 
Sbjct: 119 DRVSIVALYCADGDYDK---AIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVG 175

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++    
Sbjct: 176 DSLNDISRAIDISMQLSKLGGGVALNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRY 235

Query: 438 VNQG 441
            +Q 
Sbjct: 236 ADQM 239


>gi|225175480|ref|ZP_03729474.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168809|gb|EEG77609.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 673

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G V  FD  KI+ AI+KA  AV G+          I  +LT Q V+ L +   
Sbjct: 3   IEIKKRDGRVVPFDAEKITDAILKAAKAVGGENK-------KIAVSLTNQVVSELTKMGY 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           + +I  +ED+QD VE  L+++GH +  + Y+LYR  RS +R  +S        
Sbjct: 56  NGIIPAVEDVQDTVEKVLIENGHARTAKAYILYRHRRSRIREGKSDLMDSVKD 108


>gi|328912187|gb|AEB63783.1| Ribonucleoside-diphosphate reductase nrdEB subunit alpha [Bacillus
           amyloliquefaciens LL3]
          Length = 240

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 16/244 (6%)

Query: 209 LIEKEPNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +    P + K+    ++        +  +E + + +             L  +       
Sbjct: 1   MTNTIPKWIKLNNEIMIQKDGKFQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKN 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQ 318
           +  +   L E    F+ +     + Y   F F  ++     Y+ Y L  N     +E  +
Sbjct: 61  DYYEEEFLSEYT--FEQIKSIFKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
                VA+  A  + +K   A+E  + +    +  +TPT  N+G  R  ++ SCFL  V 
Sbjct: 119 DRVSIVALYCADGDYDK---AIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVG 175

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I   +  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++    
Sbjct: 176 DSLNDISRTIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFRY 235

Query: 438 VNQG 441
            +Q 
Sbjct: 236 ADQM 239


>gi|312878494|ref|ZP_07738382.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794730|gb|EFR11171.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 203

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  LL+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-LLEKKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|312792793|ref|YP_004025716.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179933|gb|ADQ40103.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 695

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  LL+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-LLEKKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|222528565|ref|YP_002572447.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455412|gb|ACM59674.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 695

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  +L+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-ILEQKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|302871165|ref|YP_003839801.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574024|gb|ADL41815.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 695

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  +L+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-ILEQKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|254771081|gb|ACT81891.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 FYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|312623134|ref|YP_004024747.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203601|gb|ADQ46928.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 695

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  +L+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-ILEQKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|312134451|ref|YP_004001789.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
 gi|311774502|gb|ADQ03989.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
          Length = 695

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  +L+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-ILEQKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|312128309|ref|YP_003993183.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778328|gb|ADQ07814.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 695

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  +L+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSDYS-------IAEKLTDQVIE-ILEQKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
           +   +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|319645698|ref|ZP_07999929.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392245|gb|EFV73041.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 16/243 (6%)

Query: 210 IEKEPNYAKVTARFLL-----EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I + P + ++    ++      +  +  E + + +             L  +       +
Sbjct: 4   INQVPKWVQLNNEIMIQKDGKFQFEKDREAVHSYFVDYVNQNTVFFHDLKEKLDYLLEND 63

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQA 319
             +   L +    F+ +     L Y   F F  ++     Y+ Y L  N     +E  + 
Sbjct: 64  YYEEEFLSKYT--FEQIKEVFKLAYSFKFRFPSFMSAFKFYNDYALKTNDKTKILERYED 121

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPD 378
               VA+  A  + EK   A EF +L+    +  STPT  N+G  R  ++ SCFL  V D
Sbjct: 122 RVSVVALFFANGDAEK---AKEFTSLMMKQEYQPSTPTFLNAGRKRRGEMVSCFLLEVND 178

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     
Sbjct: 179 SLNDISRAVDISMQLSKLGGGVALNLSKIRAKGEPIKKVENATKGVVGVMKLLDNAFRYA 238

Query: 439 NQG 441
           +Q 
Sbjct: 239 DQM 241


>gi|23006385|ref|ZP_00048729.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 346

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 106/311 (34%), Gaps = 67/311 (21%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
             KS G+  FLK+ +  A A+  G   R+ A    ++  H D+E F+D +          
Sbjct: 12  GAKSSGLRSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWKVKEEQKVAVL 71

Query: 474 -------------------------------------RRTHDMNTANWIPDLFMKRVTQN 496
                                                +R         +PD ++KRV Q 
Sbjct: 72  VTGSKVVSKHLSAVMKACIQCEAEGDACFDPERNPALKREIKAARKAMVPDAYIKRVVQF 131

Query: 497 A-------GWTLFSPDEVSDLHDLYG-----------KEFEIAYENYERQ--ADRGEIKV 536
           A        + ++  D  S+ +                +F  + E  E      R   KV
Sbjct: 132 ARQGFTKIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDQFLRSVEADEDWSLTSRTTGKV 191

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N        G + +SN C+E        +
Sbjct: 192 SKTLKARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPTGGRIRASNPCSEYMFL----D 247

Query: 597 TAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +     QFD +      R    VL+  + +     ++  + ++ +R
Sbjct: 248 DTACNLASANLLTMYDRQTKQFDVEAFEHLNRLWTVVLEISVMMAQFPSKEIAELSYKYR 307

Query: 655 AIGLGLMGFQS 665
            +GLG   + +
Sbjct: 308 TLGLGYAXYSA 318


>gi|76664965|emb|CAJ17922.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 222

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 11/220 (5%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNL S ++     NN      +  T+  A+ V+++V    N   +    K+N  +R+
Sbjct: 6   DVSCNLSSGHMENMINNNT-----IKETVFMAMEVMNSVSTKTNIDYVPAVAKANRLNRS 60

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           +G G+MG  S L   +I +   E  ++ D     I+++++  S   A++    +  F+ S
Sbjct: 61  VGFGIMGHHSFLVKNYIDFGGEENKDLLDVFFNAINYYSLLHSCNKARQTGQKFYRFQNS 120

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +  G +  +   +L + +    +       S+  W +L+K VK  G+ NS+ +A+AP  
Sbjct: 121 HYADGSYFRNRGEILPKTQKIKKIFSKISLPSQKDWQQLEKDVKQYGLFNSHRLAVAPNG 180

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +I  I G + S+ P  Q +  ++  +         L    
Sbjct: 181 SIGYIMGTTPSLTPVKQLVEERTYGNSKTYCPMPGLKEAA 220


>gi|317160546|gb|ADV04372.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLDSVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|222354485|gb|ACM48033.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|239909412|gb|ACS32359.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLDSVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|258647549|ref|ZP_05735018.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
 gi|260852335|gb|EEX72204.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
          Length = 775

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 160/516 (31%), Gaps = 91/516 (17%)

Query: 306 FLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEK--RAVEFYNLLS-SFHFMCSTPTLFN 360
            L   +G+ +E  P+A   R A  L   E +        E ++ L  + H   STP L  
Sbjct: 34  ALKDASGNLLETTPEATLRRCAGALGRIEAKYPDPVSEEEIFDFLYPAHHVSLSTPMLAG 93

Query: 361 SGTRHPQLS--SCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
            G  H Q      F             +  A +E   L +    LG+D + +        
Sbjct: 94  LGNPHRQAPVSDAFTIGFGPKAYSYNDLLQADEEEVYLLRRGAALGHDLSRIYPAQLQTE 153

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKR---KGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   +  V+  L+    +     Q   R    GA+   L   H D E F+D     G  
Sbjct: 154 QSEKATPDVVSALERYARS----RQEAARLTACGAITLSLSIKHPDAEAFIDA----GAR 205

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
            R T  +N    I D FM  V +   +    P +                          
Sbjct: 206 MRTTAGVNCCLLIDDDFMYAVAKGESYRQQFPVDAE------------------------ 241

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVH---SSNLCTEI 588
              +   I A  LW K+L        P I F D          + G      ++ L   I
Sbjct: 242 SPLLATNIDARRLWEKLLRKAMRNEAPEIHFSDNMLKEQLAGCYAGARPQALAATLNATI 301

Query: 589 TLNSS-SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------ 641
            L +  S      NL S           FD+      +    R+ D+++DI         
Sbjct: 302 PLATYDSSRLLTVNLYSYVEQPFTEQAIFDHKLFRRHLFLVQRLADDLVDIEEEKIDSML 361

Query: 642 ------------------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                               EK ++   T+R  GL L G    L  L +   +P A    
Sbjct: 362 QNIADAEVPAEAKMIEQKLWEKVRRHLLTYRPTGLLLTGEAETLAALGLSQDTPAAGAHT 421

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
               + ++     ++V++A+ERGA+S +      +    +    +  +            
Sbjct: 422 RALKQSLAIATCESTVKMAEERGAFSDYDAGREAENSLILRLRNVAPD------------ 469

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                L  R++ IG RN  C  + P        G +
Sbjct: 470 -----LYDRMQKIGRRNLACTIVTPNRPDQQANGTT 500


>gi|297616998|ref|YP_003702157.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144835|gb|ADI01592.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 671

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    FDPSKI+ AI KA  AV G+   +S+        LT + + R+L    
Sbjct: 3   TKIKKRDGREVPFDPSKITEAIFKAAQAVGGEDRQKSLE-------LTLEVM-RVLGQKY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              +  +ED+QD VE  L++ GH K  + Y+LYR++R+  R A+S    
Sbjct: 55  QGEVFTVEDVQDIVEKVLIEHGHAKTAKAYILYRDQRTRYREAKSDLMD 103


>gi|290564402|gb|ADD39105.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|270356139|gb|ACZ80296.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|270355641|gb|ACZ79801.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|256557049|gb|ACU83705.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|254770915|gb|ACT81726.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|242554112|gb|ACS93387.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270355807|gb|ACZ79966.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|157780061|gb|ABV71575.1| UL44 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|44903271|gb|AAS48950.1| UL45 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|52139230|ref|YP_081503.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|39842065|gb|AAR31609.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270311421|gb|ACZ72798.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|132604|sp|P16782|RIR1_HCMVA RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein UL45
 gi|1780823|emb|CAA35404.1| HCMVUL45 [Human herpesvirus 5]
 gi|27808778|tpg|DAA00148.1| TPA: ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|219879649|gb|ACL51124.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|242345662|gb|ACS91980.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|242345828|gb|ACS92145.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
 gi|270355973|gb|ACZ80131.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 196/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L    +           G   +       +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVPVVNYAWLEQHQEEGKATQC------LFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|213023622|ref|ZP_03338069.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LD ++D   + I  AK+     R +G+G++ F   L      Y+   A  +  ++ E
Sbjct: 1   VRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFE 60

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I ++ + AS ELA+E+GA   F  + + +G+ PID+         +  +N      W++
Sbjct: 61  AIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDL----DAIVNEPLHYDWEQ 116

Query: 749 LKKRVKTIG 757
           L++ +KT G
Sbjct: 117 LRESIKTHG 125


>gi|294488390|gb|ADE88052.1| ribonucleotide reductase subunit 1 [Human herpesvirus 5]
          Length = 906

 Score =  136 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 198/620 (31%), Gaps = 85/620 (13%)

Query: 315 EMPQAFFMRVAMGL-ALKETEKEKRAVEFY-------NLLSS-------FHFMCSTPTLF 359
           E P   F+R+A+ L A  E  +  R   F+        +L S            ST T+ 
Sbjct: 316 ESPGGVFLRIAVALTAAIENSRHSRIYRFHLDARFEGEVLESVLKRCRDGQLSLSTFTMS 375

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             G          ++  P      + A+ +          +  + T +            
Sbjct: 376 TVGFDRVPQYDFLISADPFSRDASWAAMCKWMSTLSCGVSVSVNVTRLNA---------- 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
               V   ++        + +    +  V  +++ W  DV     +     +       +
Sbjct: 426 ---DVNSVIRCLGGYCDLIREKEVHRPVVRVFVDMW--DVAAIRVINFILKESTSELTGV 480

Query: 480 NTANWIPDLFMKRVTQNAG-WTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKV 536
             A  +P + MKR       ++LF       L DL G+E  FE  Y   E+         
Sbjct: 481 CYAFNVPSVLMKRYRAREQRYSLFGRPVSRRLSDL-GQESAFEKEYSRCEQ------SCP 533

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---------GVVHSSNLCTE 587
              ++     +KML      G   + F       S               +        +
Sbjct: 534 KVVVNTDDFLKKMLLCAL-KGRASVVFVHHVVKYSIMADSVCLPPCLSPDMASCHFGECD 592

Query: 588 ITLNSSSEETAVCNLG-----SINLLAHFANNQ---FDYDKLASTIRTAV----RVLDNV 635
           + +   +   A C         ++L      N    FD   L   +  AV      LD +
Sbjct: 593 MPVQRLTVNVARCVFARSDEQKLHLPDVVLGNTRRYFDLSVLRELVTEAVVWGNARLDAL 652

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +  +   +E A +     R + +G+ G  +AL  L   Y    + ++ +   E + F A+
Sbjct: 653 MSASEWWVESALE---KLRPLHIGVAGLHTALMRLGFTY--FASWDLIERIFEHMYFAAV 707

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            ASV+L +        F+ +++ +G F  +           L     +   W+ L+  + 
Sbjct: 708 RASVDLCKSGLPRCEWFERTIYQEGKFIFELY--------RLPRLSIASARWEALRADML 759

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RN   +A+ P   +A++ GV+ S+  S   ++ +  +              + +R 
Sbjct: 760 EFGLRNCQFLAVGPDDEVAHLWGVTPSVWASRGTVFEEETVWSLCPPNRECYFPTVVRRP 819

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR-QKWIDQAQSL 873
           L        +  +     + E      + +   A  I     +E A+     ++DQ  +L
Sbjct: 820 LRVP-----VVNYAWLEQHQEE-SKATQCLFQAAPAIQND--VEMAAVNLSVFVDQCVAL 871

Query: 874 NLYLDEPSGKKLDFIYRQAW 893
             Y D      +       W
Sbjct: 872 VFYYDSGMTPDVLLARMLKW 891


>gi|146295813|ref|YP_001179584.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409389|gb|ABP66393.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 695

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  LL+   
Sbjct: 3   TKVMKRDGTIVDFDRKKIENAIFKAAKAVGGSNYS-------IAEKLTDQVIE-LLEKKF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPK 144
              I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++       +      K
Sbjct: 55  GYSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQYIGK 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYD 191
               +++ + +S++ + L   +  A      L  +  K V        + 
Sbjct: 115 EDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAEAHINGDFH 164


>gi|213584599|ref|ZP_03366425.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 236

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 21/238 (8%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
             I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 236


>gi|83590293|ref|YP_430302.1| anaerobic ribonucleoside triphosphate reductase [Moorella
           thermoacetica ATCC 39073]
 gi|83573207|gb|ABC19759.1| Ribonucleoside-triphosphate reductase, anaerobic [Moorella
           thermoacetica ATCC 39073]
          Length = 705

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD  +I  AI KA  AV G+   ++ ++ +         VT LL     
Sbjct: 5   KIIKRDGRVVDFDEERIINAIYKAAQAVGGQDRRQASQLANQ--------VTALLAEKFV 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  +ED+QD VE  L+++GH +  + Y+LYR++ ++ R  + 
Sbjct: 57  DRLPTVEDVQDLVEKVLIENGHARTAKAYILYRQQHAEWRDFRH 100


>gi|297802304|ref|XP_002869036.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314872|gb|EFH45295.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 291

 Score =  135 bits (339), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 95/197 (48%), Gaps = 21/197 (10%)

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
              G++P L+V N TA  V+QGG KRKG         H+ +  F    +    +  R  D
Sbjct: 2   TCNGIVPVLRVFNATASYVDQGGGKRKGI--------HLTINPFFFPFQ----EEHRARD 49

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +    WIP LFM+RV  +  W+LF  +E   L D  G EFE  Y  YE        K  +
Sbjct: 50  LFYGLWIPYLFMERVQTDGQWSLFCSNEAPGLADCCGAEFEKLYTQYENVG-----KAKK 104

Query: 539 KISA-VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            + A   LW ++LT   +TG P++ FK     ++  +    + SSNLCTEI   +S  ET
Sbjct: 105 VVQAQQQLWYEILTSQVKTGTPYMLFK--VRNKAINKICIPLMSSNLCTEIVEYTSPAET 162

Query: 598 AVCNLGSINLLAHFANN 614
           AVCNL SI L       
Sbjct: 163 AVCNLASIVLPRFCKGE 179



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            +HA+ +S E+A + GAY +++GS    GV    +  ++           + R  W  L 
Sbjct: 196 YYHALKSSSEIATKEGAYETYQGSP---GVVQPATWSVIP----------SDRWDWAALM 242

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +    +RNS  +A+ PTA+ + I G ++  +P   N++ +  +   F
Sbjct: 243 DMISKNVIRNSLLVALMPTASTSQILGNNECFEPYTSNVFSRRVLCNKF 291


>gi|221309913|ref|ZP_03591760.1| hypothetical protein Bsubs1_11101 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314236|ref|ZP_03596041.1| hypothetical protein BsubsN3_11027 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319158|ref|ZP_03600452.1| hypothetical protein BsubsJ_10953 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323432|ref|ZP_03604726.1| hypothetical protein BsubsS_11072 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 240

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 16/244 (6%)

Query: 209 LIEKEPNYAKVTARFLL-------EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +    PN+ K+    ++        +  +E + + +             L  +       
Sbjct: 1   MTNTIPNWIKLNNEIMIQKDGKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYLIKN 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS--RIEMPQ 318
           +  +   L +    F+ +     + Y   F F  ++     Y+ Y L  N     +E  +
Sbjct: 61  DYYEEEFLSKYT--FEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERYE 118

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVP 377
                VA+  A  + EK   AVE  + +    +  +TPT  N+G  R  ++ SCFL  V 
Sbjct: 119 DRVSIVALYCADGDYEK---AVEEVHTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEVG 175

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++    
Sbjct: 176 DSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFRY 235

Query: 438 VNQG 441
            +Q 
Sbjct: 236 ADQM 239


>gi|193214776|ref|YP_001995975.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088253|gb|ACF13528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroherpeton thalassium ATCC 35110]
          Length = 1966

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 101/293 (34%), Gaps = 59/293 (20%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T        PQ  +CF+ +V DDL    GIF  +   A + K+  G G +++ +R 
Sbjct: 165 TGKLTQSEDSYTRPQAHACFIQSVQDDLVNEGGIFDLVVREARVFKFGSGTGTNFSNIRA 224

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  +    G S G++ FLK+ +  A A+  G   R+ A    +   H D+EEF++ +  
Sbjct: 225 EG-EMLSGGGTSSGLMSFLKIFDAAAGAIKSGGTTRRAAKMVIVNIDHPDIEEFIEWKAK 283

Query: 469 TGD------------------------DRRRTHDMNTAN----------WIPDLFMKRVT 494
             +                        +       N A            +P  ++ R  
Sbjct: 284 EEEKVAAMVAGSKINSTFLKAILHEALENGADRKTNPALNDLIQRALYRGVPMNYILRTL 343

Query: 495 Q-------NAGWTLFSPDEVSDLHDLYGK-----------EFEIAYENYE--RQADRGEI 534
                   +  +  +     S+ +                EF  A EN E      R + 
Sbjct: 344 SLVSQGFTSLDFESYDTHYESEAYSTVSGQNSNNTIRLTNEFMQAVENDEMWELRWRTDG 403

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            V R + A  LW K+    ++   P + F    N      + G +++SN C  
Sbjct: 404 SVCRTVRAAELWNKIAFSAWKCADPGLQFDTTINEWHTCPNDGRINASNPCVT 456



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 30/251 (11%)

Query: 542  AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
            A  L  K+ ++ +    P   F             G+    + C+E        +   CN
Sbjct: 785  AEPLNDKIKSLEYIGEEP--VFDLTEPETHHFVANGI--GVHNCSEYMFL----DDTACN 836

Query: 602  LGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            L S+NL+          D D L    R     L+  + +  +   K  + ++ +R +GLG
Sbjct: 837  LASLNLIHFVNEKTGDVDTDALRHAARVWTLTLEISVLMAQYPSPKIAQQSYDYRTLGLG 896

Query: 660  LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS----- 714
                 S L +   PY SP+A+ +A      ++  A + S E+A + GA+  F  +     
Sbjct: 897  FANLGSLLMVSGTPYDSPKALAVAGAISAIMTGEAYATSAEMAADIGAFPKFAHNRDAML 956

Query: 715  --------------LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
                            D     +  + L      +  + + +   WD   K  +  G RN
Sbjct: 957  RVVRNHRHAAHNAPKEDYEDLSVVPMSLDPAHCPK-KLCKVAGETWDRALKLGEKHGFRN 1015

Query: 761  SNCMAIAPTAT 771
            +    IAPT  
Sbjct: 1016 AQVSVIAPTGC 1026



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 11/130 (8%)

Query: 793  SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA-- 848
             ++      +N    + LK        + +   Y  G+  I +   +  +   +   A  
Sbjct: 1569 KSLGFSEQELNDPNFDMLKSLGYAKAEIEAANDYICGTMMIEDAPHLKPEHLPVFDCASK 1628

Query: 849  ------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
                    ID M  +   +  Q +I  A S  + +  E + +++  +Y  +W   LK   
Sbjct: 1629 CGRKGKRYIDYMAHVRMMAAVQPFISGAISKTVNMPAEATVEQIREVYLSSWHYMLKAIA 1688

Query: 902  YLRSRSATSV 911
              R  S  S 
Sbjct: 1689 LYRDTSKLSQ 1698


>gi|78044308|ref|YP_360870.1| anaerobic ribonucleoside triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996423|gb|ABB15322.1| anaerobic ribonucleoside-triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 671

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FDP+KI+ AI KA  AV G+        ++    LT Q +   L+   +
Sbjct: 4   EIIKRDGRVVPFDPNKITEAIFKAARAVGGED-------RETALKLTLQVLG-YLKAKYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + ++ED+QD VE  L+++GH K  + Y+LYR +R+ +R  +S     
Sbjct: 56  GNLFNVEDVQDAVEKILIENGHAKTAKAYILYRAKRTAIREGKSELMDT 104


>gi|260893396|ref|YP_003239493.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260865537|gb|ACX52643.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 670

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FDP++I+ AI KA  AV G+        ++    LT + + + L+   + 
Sbjct: 5   IRKRDGREVPFDPNRITEAIFKAARAVGGED-------RETAMRLTLEVM-KYLKARYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            I  +ED+QD VE  L++ GH K  + Y+LYR  R+ +R A+S        
Sbjct: 57  TIFGVEDVQDAVEKVLIEHGHAKTAKAYILYRAWRTRIREAKSELMDAVAD 107


>gi|147678177|ref|YP_001212392.1| anaerobic ribonucleoside triphosphate reductase [Pelotomaculum
           thermopropionicum SI]
 gi|146274274|dbj|BAF60023.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Pelotomaculum thermopropionicum SI]
          Length = 670

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD +KI+ AI KA  AV G+        +     LT + + +LL+   + 
Sbjct: 5   IKKRDGREVPFDETKITDAIFKAARAVGGED-------RQTAMELTIEVL-KLLKKKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD VE  L+++GH +  + Y+LYR++R+ +R A+S       +   L+    
Sbjct: 57  SVFGVEDVQDVVEKVLIEAGHARTAKAYILYRDKRTRIREAKSDLMD--AVEEILEETNR 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A S    ++  I    +  ++   +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKKYYLTRLIPEEMSQAHLRGDIHIHDLD 163


>gi|256752117|ref|ZP_05492984.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749026|gb|EEU62063.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 692

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D + +  E+         
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEVTDYVEK--------- 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----SHSKSDAPIAP 143
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +       K       
Sbjct: 55  HFEGIASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQDIREFKKMFMDIEKMVDEYIG 114

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
           KL   +++ + +S++ + L   +     A   L  +    V
Sbjct: 115 KLDWRVNENSNMSYSLQGLNNHISSTITAYYWLNKIYPPEV 155


>gi|296133640|ref|YP_003640887.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola sp.
           JR]
 gi|296032218|gb|ADG82986.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola potens
           JR]
          Length = 675

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  F+ +KI+ AI KA  AV G+        + I   LT + + + L+   + 
Sbjct: 5   IKKRDGRVVDFNETKITDAIFKAAQAVGGED-------RQIAMELTLEVL-KYLKQKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD VE  L+++GH K  + Y+LYR  R+ +R A+S       +   L+    
Sbjct: 57  QLFSVEDVQDAVEKILIENGHAKTAKAYILYRAHRTRIREARSELMD--AVQEILRETNR 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A S    +S  I   +   ++   +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKNFYLSRMIPEEQAQAHINGDIHIHDLD 163


>gi|326390979|ref|ZP_08212529.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993021|gb|EGD51463.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 692

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ AI KAF AVE      ++ + D +    E  +       
Sbjct: 4   AMKVIKRDGREVEFDKIKIANAIYKAFKAVEEGEYKDALEIADEVTEYVENNLE------ 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  ++R  +        +  +   
Sbjct: 58  ---GIASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQEIREFKKMFMDIEKMVDEYIG 114

Query: 148 MMD----DGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
             D    + + +S++ + L   +     A   L  +    V
Sbjct: 115 KQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|62996794|gb|AAY24447.1| ribonucleoside-diphosphate reductase large chain [Iridovirus IV31]
          Length = 198

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+G+   YL+  H ++  FL++RK+TGD   R  +++    I D FM+ + +       
Sbjct: 2   VRRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLNLHHGINITDKFMELIERCTKEK-- 59

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           + D+  +L D + KE                  V  KISA  LW+++L    +TG P+I 
Sbjct: 60  NVDDTWNLIDPHSKE------------------VTDKISAKELWQRILETRLKTGEPYIC 101

Query: 563 FKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           F D CN       V     +  SNLC+E+ L + S  TAVC L S+NL  H+   + D  
Sbjct: 102 FIDTCNKGMYDFQVEKGLKIKQSNLCSEVLLPTDSSRTAVCCLSSLNL-EHYDEWKDDPL 160

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            +   +      L   I+     IE+A  S    R+IG
Sbjct: 161 FIKDVMEMLDNALTIFIENAPKRIERAVNSAKKERSIG 198


>gi|291545180|emb|CBL18289.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ruminococcus sp. 18P13]
          Length = 774

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI +A  +V G     ++++   +  L E+          
Sbjct: 3   IHIIKRDGRKVPFNMEKIANAIFRAAQSVGGTNFEEAMQIAARVCALVEE--------KY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E +QD VE +L++ GH    + Y+LYR ER+  R  +++  +           
Sbjct: 55  PGQVPTVEQVQDLVEKTLIEEGHAATAKAYILYRYERTRSREMKTNLMTVLNELTFNPAK 114

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 115 DSDIKRENANID 126


>gi|121535244|ref|ZP_01667058.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
 gi|121306129|gb|EAX47057.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
          Length = 671

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD +KI+ AI KA  AV G           +   LT + + R L+   +
Sbjct: 4   KIKKRDGREVPFDETKITEAIFKAAKAVGGVDKQ-------LAMELTIEVL-RYLKQRYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +ED+QD VE  L++ GH K  + Y+LYR++R+ +R A+S    DA     ++   
Sbjct: 56  GSIFGVEDVQDAVEKVLIEKGHAKTAKAYILYRDKRTRMREAKSEL-MDAVAEILVETSR 114

Query: 150 DDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYD 191
           ++  + +  S ++  I   A     L  +  + +     +  Y 
Sbjct: 115 ENANVSNSPSAKMLQIASAASKAYYLNRLIPEHLAQAHIRGDYH 158


>gi|330861131|emb|CBX71394.1| hypothetical protein YEW_EY21260 [Yersinia enterocolitica W22703]
          Length = 171

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 32/196 (16%)

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               ++ +  +  ++   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 2   KTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHP 61

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               + ++                         E  I  + Y          + +D  + 
Sbjct: 62  IVSPIEIRK------------------------EGKIGRVYYPA------PYMTNDNLEY 91

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW  G+KT YY+
Sbjct: 92  YQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYI 151

Query: 904 RSRSATSVEKSTLKGV 919
           R R    +E + ++G 
Sbjct: 152 RLRQMA-LEGTEVEGC 166


>gi|152974878|ref|YP_001374395.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023630|gb|ABS21400.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 233

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 13/221 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ +  T H       E     IE      +L E  ++   +    
Sbjct: 18  YQLHKDKEALEVFMEEARANTIHF--DSVAERIKYMIEHDYYYNVLDEYKLEE--IEAVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           D+ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   + +K   A 
Sbjct: 74  DIAYGENFKFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVKK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 QFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +  + + +R  G  I G    + GV+P +K+  D+    NQ
Sbjct: 191 VALNLSKLRARGEQIKGIENAASGVVPVMKLLEDSFSYANQ 231


>gi|91202836|emb|CAJ72475.1| similar to oxygen sensitive ribonucleoside triphosphate reductase
           NrdD [Candidatus Kuenenia stuttgartiensis]
          Length = 812

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   KI+ AI KA  AV G   + +  +           V+  L    + 
Sbjct: 8   VVKRDGRTAPFVEKKIADAIFKAAQAVGGNDRALAEEL--------AVVVSMFLAKKYNG 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPKL 145
               IE+IQD VE  L+++GH K  + Y++YR++R+ +R +     QS  + D      +
Sbjct: 60  NPPGIENIQDVVEKVLIETGHAKTAKAYIIYRDKRARIRDSLRVRKQSQKRVDTTDVSLM 119

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVS---SKIVLSETYKNMYDGLSESDLETAL 202
                      ++ +++ + +E+      +V+   + +V    + +  + +S S +   +
Sbjct: 120 VDTETKDETFPWDKRKVAVALEKEADISGEVAEEIASVVEQRVFSSGLNRISTSLIRELV 179


>gi|297545066|ref|YP_003677368.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842841|gb|ADH61357.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 692

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD SKI  AI KAF AV      +++ + D + N  E+ +        
Sbjct: 5   MKVIKRNGKEVEFDKSKIVNAIYKAFKAVGEGEYKQAVEIADEVTNYVEKNLE------- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----SHSKSDAPIAPK 144
              I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +       K       K
Sbjct: 58  --GIASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIREFKKMFMDIEKMVDEYIGK 115

Query: 145 LKIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
           L   +++ + +S++ + L   +     A   L  +    V
Sbjct: 116 LDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|289578846|ref|YP_003477473.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
 gi|289528559|gb|ADD02911.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
          Length = 692

 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++ + D I N  E+ +       
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYKQAVEIADEITNYVEKNLE------ 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP---- 143
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +      
Sbjct: 58  ---GIASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIREFKKVFMDIEKMVDEYIG 114

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
           KL   +++ + +S++ + L   +     A   L  +    V
Sbjct: 115 KLDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|302390515|ref|YP_003826336.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201143|gb|ADL08713.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 696

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+IKR+G V  FD  KI  AI KA  AV G   +       I + LT++ + ++L+   
Sbjct: 3   TQIIKRDGTVQKFDREKIENAIFKAARAVGGSDRT-------IAQRLTDEVI-KILEKRY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +  +E++QD VE  L+++GH +  + Y+LYR++  D+R  + 
Sbjct: 55  RGSVPTVENVQDTVEKVLIENGHARTAKAYILYRKQHQDMREFRK 99


>gi|316969145|gb|EFV53297.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 208

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             +E++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ R  +IDQ+QSLN
Sbjct: 45  FGEESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGAFIDQSQSLN 104

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD------------- 920
           +++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T+  +              
Sbjct: 105 IHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDKLALKQKKTKEEEEGQ 164

Query: 921 -------GKLNAVPVTDPN--SSTHSLGIPSSCTSDTECEVC 953
                   K    P +  N  ++ ++L       +  EC +C
Sbjct: 165 RPNGGYVDKSRKFPTSGDNWSNNVNTLLQQCRLENGNECMLC 206


>gi|291557671|emb|CBL34788.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 787

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR   +               
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREMNTSLMKIYEDLTFKAAR 116

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 117 DCDIKRENANID 128


>gi|167750480|ref|ZP_02422607.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
 gi|167656631|gb|EDS00761.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
          Length = 787

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR   +               
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREMNTSLMKIYEDLTFKAAR 116

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 117 DCDIKRENANID 128


>gi|291530822|emb|CBK96407.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum 70/3]
          Length = 787

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  AV G     +  + + + +  E  V      NK
Sbjct: 3   TKIQKRDGRTVPFNIEKIADAIYKAARAVGGNDYQEAGEMAEKVCDYLEANV------NK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR   +               
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREMNTSLMKIYEDLTFKAAR 116

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 117 DCDIKRENANID 128


>gi|213027740|ref|ZP_03342187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 136

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 12/146 (8%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR++               E   LY  +  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF----------EPPALY-HHVVKM 109

Query: 260 IEEGVKARLLHESMMDFDLVYLANDL 285
           +E G     L E   + +   + + +
Sbjct: 110 VELGKYDNHLLEDYTEEEFKQMDSFI 135


>gi|20808264|ref|NP_623435.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516863|gb|AAM25039.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 692

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KIS AI KAF AV       ++ + D +    EQ          
Sbjct: 5   MKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFE------- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E IQD VE  L++ G+ K  + Y+LYR++  D+R  +        +  +    
Sbjct: 58  --GIASVEQIQDVVEVFLIKRGYAKAAKAYILYRKQHQDIREFKKMVMDIEKMVDEYLGK 115

Query: 149 MD----DGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKN 188
            D    + + +S++ + L   +     A   L  +    V       
Sbjct: 116 QDWRVNENSNMSYSLQGLNNHISSSITAHYWLNKIYPPEVRDAHISG 162


>gi|150389197|ref|YP_001319246.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949059|gb|ABR47587.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 710

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 39/273 (14%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V KRNG +  FD  KI  AI  A  +V GK    + R+  +  ++  +T      
Sbjct: 1   MGVMKVQKRNGEIVDFDAIKIKEAIFSAAKSVGGKDEMTASRLSKLAVDIVSET------ 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +A I  +EDIQD VE  L++ GH K  + Y+LYR+++ D+R  ++    DA +  + 
Sbjct: 55  --YAANIPSVEDIQDIVEKVLIEEGHAKTAKSYILYRKKQKDIREVKN-LFMDAEVMVEE 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++D             + E A  G  LQ +++ IV S T K   + +   +L  A I
Sbjct: 112 YVNLED-----------WRVNENANMGFSLQGLNNHIVESITKKYWLNKIYTKELRDAHI 160

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLR-------REVLTTVYKKPQKATHHEMQCLYPEYF 256
                +     +   +        L        +     V  KP K     +  L     
Sbjct: 161 QGDLHI----HDLGLLAPYCCGWDLEAFLKDGFKGAKGKVESKPPKHFESALGQL---VN 213

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
             Y  +G  A     S +D    YLA  + Y++
Sbjct: 214 LLYTLQGEAAGAQAVSSID---TYLAPFIYYDK 243


>gi|323701309|ref|ZP_08112984.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533911|gb|EGB23775.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 676

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD +KI+ AI KA  AV G+        +     LT + + ++L+   + 
Sbjct: 5   IQKRDGRIVPFDETKITEAIFKAAKAVGGED-------RQTAMELTLEVL-KMLKKKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E++QD VE  L+++GH +  + Y+LYR +R+ +R A+S       +A  L     
Sbjct: 57  NLFGVEEVQDMVEKVLIETGHARTAKAYILYRHQRTRLREAKSDLMD--AVAEILAETNR 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A S    ++  I    +  ++   +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKKYYLTRLIPEEMSQAHIRGDIHIHDLD 163


>gi|268609355|ref|ZP_06143082.1| anaerobic ribonucleoside triphosphate reductase [Ruminococcus
           flavefaciens FD-1]
          Length = 772

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI KA  A  G   + ++ V           V +L +   
Sbjct: 3   IHIIKRDGRKVPFNIEKIANAIFKAAQAKGGTDFNAAMDVAVE--------VCKLYEEQN 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQD VE +L++ GH K  + Y+LYR ER+  R  +++              
Sbjct: 55  PGKTPTVEEIQDLVEKTLIEKGHAKTAKAYILYRYERTRSREMKTNLMCVLNELTFSAAK 114

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 115 DSDIKRENANID 126


>gi|301792387|ref|XP_002931160.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 260

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
           + S       + ++  DG        ++   +++ C GL    V    +  +  + +Y G
Sbjct: 102 NPSAPQPPATMHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSG 161

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T    ++ TL  + P+YA + AR  +  L +E         +K     M+ LY
Sbjct: 162 VTTVELDTLAAETAATLTTEHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLY 213

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQ 299
                     G  + ++ +S +D  L     L + + Y+RDF++ Y G +
Sbjct: 214 NYINPHN---GRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 260



 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGG--VTSFDPSKISRAIMK 52
           V     +  P      P+    + VIKR+G      FD  KI+  I K
Sbjct: 90  VPPAPPNCSPVSNPSAPQPPATMHVIKRDGRQERVMFD--KITSRIQK 135


>gi|329729535|gb|EGG65936.1| ribonucleoside-diphosphate reductase subunit alpha domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 208

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 40/236 (16%)

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI-----GLLAEVRDEL-AMNR 740
             ++F++I  S+E+A+ERG  Y  F+ S +  G +              +VR+    M  
Sbjct: 1   MMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAI 60

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 61  PTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 120

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               FL                                      + +AF  D M LI+  
Sbjct: 121 YPMPFL-------------------------------SPQTMWYYKSAFNTDQMKLIDLI 149

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++   SVE+ T
Sbjct: 150 ATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK-LLSVEECT 204


>gi|167037075|ref|YP_001664653.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115490|ref|YP_004185649.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855909|gb|ABY94317.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928581|gb|ADV79266.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 692

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ AI KAF AV       ++ + D +    E  +       
Sbjct: 4   AIKVIKRDGREVEFDKIKIANAIYKAFKAVGEGEYKDALEIADEVTEYVENNLE------ 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ G+ K  + Y+LYR++  ++R  +        +  +   
Sbjct: 58  ---GIASVEQIQDIVEQYLIKHGYAKAAKAYILYRKQHQEIREFKKMFMDIEKMVDEYIG 114

Query: 148 MMD----DGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
             D    + + +S++ + L   +     A   L  +    V
Sbjct: 115 KQDWRVNENSNMSYSLQGLNNHISSTITAYYWLNKIYPPEV 155


>gi|332981657|ref|YP_004463098.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
 gi|332699335|gb|AEE96276.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
          Length = 695

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  F  SKI  AI KA  AV G         + I   LT++ V  LLQ     
Sbjct: 9   IKKRDGRIVEFQRSKIEDAIFKAAQAVGGSD-------RSIAVRLTDKVVDMLLQR-FDG 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            +  +ED+QD VE  L++ G+ +  + Y+LYR++  D+R  +  
Sbjct: 61  GMPSVEDVQDIVEKVLIEEGYARTAKAYILYRKQHQDIREIKKA 104


>gi|307265926|ref|ZP_07547475.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919095|gb|EFN49320.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 692

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI+ AI KAF AV      +++++ D + +  E+         
Sbjct: 4   AMKVIKRNGNEVEFDKSKIANAIYKAFKAVGEGEYEQAVQIADEVTDYVEK--------- 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +   
Sbjct: 55  HFEGIATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIREFKKMFMDIERMVDEYIG 114

Query: 148 MMD----DGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
             D    + + +S++ + L   +     A   L  +    V
Sbjct: 115 KQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|283852324|ref|ZP_06369595.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572281|gb|EFC20270.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 728

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
           VN         +A P        ++ KR+G + +F+  KI  AI +A  A    G     
Sbjct: 14  VNDNAPGLAAPVAPPRIAIAVPTRIRKRDGTIVAFNADKIRSAISRAGAATGDFG----- 68

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
              D    LT Q + ++L H  +  I  IE IQD VE +L+ + H +  R Y +YR +R+
Sbjct: 69  --DDEALLLTAQVM-KVLSHRFAGQIPDIERIQDVVEQALISANHFRTMRAYSIYRAQRA 125

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMD 150
            +R  +      A    +     D
Sbjct: 126 RLREDKKTVVDVAASVNEYLDRQD 149


>gi|167039791|ref|YP_001662776.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300914964|ref|ZP_07132279.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307724884|ref|YP_003904635.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
 gi|166854031|gb|ABY92440.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300888688|gb|EFK83835.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307581945|gb|ADN55344.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
          Length = 692

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D + +  E+         
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEVTDYVEK--------- 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +   
Sbjct: 55  HFEGIATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIREFKKMFMDIERMVDEYIG 114

Query: 148 MMD----DGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
             D    + + +S++ + L   +     A   L  +    V
Sbjct: 115 KQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|327399299|ref|YP_004340168.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
 gi|327181928|gb|AEA34109.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
          Length = 995

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G +  FD  KI+ AI KA  A             +  K LT + +  L      
Sbjct: 4   RIVKRDGRIVEFDSEKITTAITKAGKATGEFDY-------ETAKKLTIKVLD-LAYRFFK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
                +E+IQD VE  L+ S   K  + Y++YRE+ + +R  ++ +  +       KL  
Sbjct: 56  GKTPTVEEIQDIVEEVLLSSPFKKTAKAYIIYREQHAQLREFKNRADVELVEQYLNKLDW 115

Query: 148 MMDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIVLSETYKNMYD 191
            + + + +SF+ + L   +  A      L  +  K +        + 
Sbjct: 116 EVKENSNMSFSLQGLNNYISSAITKTYWLNKIYPKEIREAHLSGDFH 162


>gi|303249443|ref|ZP_07335662.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302489154|gb|EFL49127.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 724

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 10  GDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
            ++ A   +A   P      ++ KR+G V  FD  KI  AI +A  A            +
Sbjct: 19  AEQPASARVAVAVPA-----RIKKRDGKVVPFDADKIFSAIRRAGAATGDFD-------E 66

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
              + LT Q V ++L H  +  I  IE IQD VE +L+ + H +  R Y +YRE+R+ +R
Sbjct: 67  SEARLLTAQAV-KVLSHRFAGQIPDIERIQDVVEQALISANHFRTMRAYSVYREQRAKLR 125

Query: 130 AAQSHSKSDAP 140
             +      A 
Sbjct: 126 HDKKTVVDVAA 136


>gi|294102547|ref|YP_003554405.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
 gi|293617527|gb|ADE57681.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
          Length = 678

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD SKI+ A+MKA  AV+ +         ++ + +T Q V+ L    K 
Sbjct: 4   RIRKRDGHEVPFDESKITTAVMKAAKAVDHQNP------MEVGQEITRQIVSLLEIFYKE 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA----PKL 145
             +  +E +QD VE  L++ G+  I + Y+LYRE+ + +R  +    S A +      KL
Sbjct: 58  EGVPTVEQVQDLVEKILIEKGYASIAKAYILYREQHAKMRDTKKLLGSAADMINKYLEKL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
              +++ + +S++ + L   +     A   LQ++ S  V     +++   L   DL    
Sbjct: 118 DWKVNENSNMSYSLQGLNNYIASELTAQYWLQEIYSPRVRE---RHISGDLHIHDLSNLS 174

Query: 203 IFSS 206
           ++  
Sbjct: 175 VYCC 178


>gi|303239258|ref|ZP_07325787.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302593303|gb|EFL63022.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 770

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  G     ++        L E+ V  + +   
Sbjct: 3   TKIKKRDGREVPFNIEKIANAIFKAASATGGHDYESALS-------LAEKVVDSIEKEMD 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E+IQD VE  L+ +GH +  + ++LYR +R+ VR   +            +  
Sbjct: 56  K-KVPSVEEIQDSVEKVLIDTGHVRTAKAFILYRADRTRVREMNTRLMKIYEDLTFKEAK 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDMKRENANID 126



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 22/169 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI   DG  + FN +++   + +A S                    G  + +   +L   
Sbjct: 4   KIKKRDGREVPFNIEKIANAIFKAAS------------------ATGGHDYESALSLAEK 45

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
               IEKE +    +   + + + + ++ T + +  KA                    + 
Sbjct: 46  VVDSIEKEMDKKVPSVEEIQDSVEKVLIDTGHVRTAKAFILYRADRTRVREMNTRLMKIY 105

Query: 266 ARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLHIN 310
             L  +   D D+     ++  +        +   G +  Y+ Y L   
Sbjct: 106 EDLTFKEAKDNDMKRENANIDGDTAMGTMLKYGSEGAKQFYEMYVLKPE 154


>gi|220928152|ref|YP_002505061.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulolyticum H10]
 gi|219998480|gb|ACL75081.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulolyticum H10]
          Length = 769

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    ++ + + + +  E ++ R      
Sbjct: 3   TKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAESVVDFIESSLDR------ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E+IQD VE  L+++GH K  +E++LYR +R+ VR   +               
Sbjct: 57  --KVPSVEEIQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLMKVYEELTFKDAK 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDLKRENANID 126



 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 28/175 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS---GLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KI   DG  + FN +++   + +A S   G    ++  +       +   L         
Sbjct: 4   KIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAESVVDFIESSLDRKVPSVEE 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  +   +  E  +AK    F+L             +  +    EM     +        
Sbjct: 64  IQDAVEKVLIETGHAKTAKEFILY------------RADRTKVREMNTRLMK-------- 103

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLHINGSR 313
            V   L  +   D DL     ++  +        +   G +  Y+ Y L    +R
Sbjct: 104 -VYEELTFKDAKDNDLKRENANIDSDTAMGTMLKYGSEGAKQFYEMYVLKPEHAR 157


>gi|310659559|ref|YP_003937280.1| ribonucleoside-triphosphate reductase [Clostridium sticklandii DSM
           519]
 gi|308826337|emb|CBH22375.1| Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium sticklandii]
          Length = 783

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 124/696 (17%), Positives = 227/696 (32%), Gaps = 135/696 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQD-IIKNLTEQTVTRLLQH 86
           ++V KR+G +  FD  KI  AI KA     EG   + S+ + + I ++  ++ V      
Sbjct: 1   MKVEKRDGRIVEFDKIKIKNAIEKAMSETIEGIDEALSLMISNGIAEDFEQRRV------ 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK----SDAPIA 142
                 V +++IQD VE  LM+S    + + Y++YR E+   R  +   +    +D  I+
Sbjct: 55  -----PVRVDEIQDMVEIMLMESPRKDVAKSYIIYRSEQDKTRPKKQKVEHPLITDEFIS 109

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P        G L +F   R           L+D+S +    ET +         +  T +
Sbjct: 110 PYKHKPSPMGELGNFVFYRTYSR------YLKDISRREYWWETVRR------AVEYNTGI 157

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +S    +K  +         +  LR+ +    +                       E 
Sbjct: 158 VKTSAEEAQKLFD--------NIFNLRQFLSGRTFWIGN------------------TEV 191

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                + + +     +  L +         F           Y L I            +
Sbjct: 192 SKYYPMANYNCAFEIIDSLESFKD-----LF-----------YLLMIGAGVG-------V 228

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS-CFLTTVPDDLY 381
           RV       + +   +    Y L+    +    P      T    +S       V D   
Sbjct: 229 RV----LKDDVKSIPKIRTDYKLI-HKDYTPIEPNDRMENTSLKFVSEDEVEIIVGDSKE 283

Query: 382 GIFGALQENAMLA-----KYSGGLGNDWTPVRGLGAHIHGTNGKSQG-------VIPFLK 429
           G   +L+    L      +    +  D++ VR  G  +    G + G        I   K
Sbjct: 284 GWVQSLEFFFNLLSGHDYRKVKTIIMDYSNVRKKGEMLRTFGGTASGHDSLKQMFIKIDK 343

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V +  A+++N                +++  + LD+    G+      ++          
Sbjct: 344 VIHKKAISLNHKRV------------NLEPIDCLDIANIIGE------NVVVGGVRRTAE 385

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M  + Q+        D  S L+     ++ I      RQ     I   +K  +    R  
Sbjct: 386 MVIIDQDDK---TCIDAKSKLYIQQDGQWTIDQSISHRQMSNNSIYYTKK-PSREQLRWQ 441

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L  +  +G P     +    R P  +       N C EI L++      +CNL +IN  A
Sbjct: 442 LEKMRYSGEPGFINAEAAIKRRPNMN-----GVNPCGEILLDT----KGLCNLTTINAFA 492

Query: 610 HFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +N  D + L    R + R    +  +    + K        + IG  L G+Q  + 
Sbjct: 493 FVKEDNTLDLEGLLQAQRLSARAGYRMTLLELE-LPKWDMVQQRDKLIGCSLTGWQDMV- 550

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              +     E  E+  +    +   A  A+ + A+E
Sbjct: 551 -NALAMTKDEERELLSK----LRDEAHKAANDYAKE 581


>gi|229166285|ref|ZP_04294044.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617230|gb|EEK74296.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 221

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 13/221 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYNLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 HFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|229010747|ref|ZP_04167944.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132248|ref|ZP_04261104.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228651186|gb|EEL07165.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750421|gb|EEM00250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 221

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 13/221 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 6   YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYSLEE--VEGVY 61

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 62  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 118

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 119 HFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 178

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 179 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|134298561|ref|YP_001112057.1| anaerobic ribonucleoside triphosphate reductase [Desulfotomaculum
           reducens MI-1]
 gi|134051261|gb|ABO49232.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 676

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 8/112 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G   +F+ +KI+ AI +A  AV G+        +     LT   + ++L+   
Sbjct: 3   TKVRKRDGREVAFNETKITEAIFRAAKAVGGED-------RQTAMELTLDVL-KMLKKQY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +  +  +E++QD VE  L++SGH +  + Y+LYR +R+ +R A+S       
Sbjct: 55  NGNLFGVEEVQDMVEKVLIESGHARTAKAYILYRAQRTRLRDARSDLMDAVE 106


>gi|219666419|ref|YP_002456854.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
 gi|219536679|gb|ACL18418.1| anaerobic ribonucleoside-triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
          Length = 789

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    S+        L  + V   L+ N 
Sbjct: 3   TKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSL--------LLAEEVVNYLEVNL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR   +            +  
Sbjct: 55  HKKVPSVEEIQDAVEKILIERGHARTAKEFILYRAERTRVREMDTRLMKVYEELTFKEAK 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDMKRENANID 126


>gi|213622029|ref|ZP_03374812.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 225

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 21/227 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFF 321
               +  +  D   V+   +  +   F F  +LG    Y  Y L   +G R  E  +   
Sbjct: 63  YDDAVL-ARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
             VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 122 TMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNM 178

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             I  A+     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 179 ESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 225


>gi|163939259|ref|YP_001644143.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861456|gb|ABY42515.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
          Length = 233

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 13/221 (5%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    ++ ++ T H       E      E      +L E  ++   V    
Sbjct: 18  YQLHKDKEALEVFMEEARENTVHFNSV--AERMEYMKEHDYYYNVLDEYSLEE--VEGVY 73

Query: 284 DLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
           ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A 
Sbjct: 74  NIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAK---AK 130

Query: 341 EFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  GG
Sbjct: 131 HFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGG 190

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +  + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 191 VALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 231


>gi|284049138|ref|YP_003399477.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283953359|gb|ADB48162.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 708

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   SFD +KI  AI KA  AVEGK   R   +++I   +  +   RLL    
Sbjct: 1   MKVIKRDGSTVSFDRNKIVTAISKANKAVEGKERLRQEDIEEIASFVEHKNKKRLL---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD VE  +M  GH+++ + Y++YR  R+ VR A +  +S
Sbjct: 57  ------VEDIQDMVEKQIMIRGHYELAKAYIIYRYNRALVRKANTTDES 99


>gi|317133406|ref|YP_004092720.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471385|gb|ADU27989.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 781

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  G     ++    + + +TE+      Q   
Sbjct: 3   TRIRKRDGREAPFNMEKIANAIYKAARANGGHDYDMAV---ALAEKVTEEI-----QRRS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E IQD VE  L+++GH +  + Y+LYR  R+ VR   +              +
Sbjct: 55  GDSIPTVEGIQDIVEHVLIETGHARTAKAYILYRANRTRVRDMNTRLMKIYEELTFKSSL 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDLKRENANID 126


>gi|220931945|ref|YP_002508853.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
 gi|219993255|gb|ACL69858.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
          Length = 676

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F   KI  A+MKA  AV          V++I + +T + ++ L    K 
Sbjct: 4   KIKKRDGRLVPFKHEKIKNAVMKAAQAVGRND------VEEIGEEITREIISYLNIFFKD 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----SHSKSDAPIAPKL 145
             +  +E +QD VE  L++ G+ +  + Y+LYRE+ + +R  +        +      K 
Sbjct: 58  EGVPTVEQVQDLVEKVLIEKGYAETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKS 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
              +++ + + F+ + L   +     A   LQ++  K V
Sbjct: 118 DWKVNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEV 156


>gi|169832136|ref|YP_001718118.1| anaerobic ribonucleoside triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638980|gb|ACA60486.1| anaerobic ribonucleoside-triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 709

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  +I+ AI +AF A    G +      D    +T++ +  L     + 
Sbjct: 5   IKKRDGRIAAFESRRITNAIAQAFKATGEAGWAD----DDAAPAVTQRVIEALENRGIA- 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKIM 148
               +E++QD VE SLM+ G+H+  + Y+LYRE+   +R  +S    D       +    
Sbjct: 60  -TPTVEEVQDLVERSLMELGYHRTAKAYILYREQHRQMREMKSLVNCDLVESYLNQADWR 118

Query: 149 MDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIV 181
           + +    SF+ + L   +     A   L+ +    V
Sbjct: 119 VAENANSSFSLQGLHSYISNTAAASFWLERIYPPEV 154


>gi|317052449|ref|YP_004113565.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
 gi|316947533|gb|ADU67009.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
          Length = 688

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+ AI KA  +V G         ++I   L+ Q +  L+      
Sbjct: 5   VMKRDGRFVPFDQERIATAIFKAARSVGGSD-------RNIASALSLQVLRALVDQYGQY 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE  L++ GH K  + Y++YR +R+D+RA     +    I         
Sbjct: 58  GSCTVEQVQDCVEKVLIEGGHAKTAKAYIIYRHQRADMRAMTESFEGLESIVES----YL 113

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            G+    N          A  GL +  S  + + 
Sbjct: 114 GGSDWRVNENSNTTY---ALQGLNNYISSTITAR 144


>gi|326204794|ref|ZP_08194648.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985006|gb|EGD45848.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 770

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    ++ + + + +  E ++ R      
Sbjct: 3   TKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAERVADFIESSLDR------ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E++QD VE  L+++GH K  +E++LYR +R+ VR   +               
Sbjct: 57  --RIPSVEELQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLMKVYEELTFKDAK 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDLKRENANID 126



 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 38/177 (21%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS---GLQDVSSKIVLSETYKNMYDGL-----SESD 197
           KI   DG  + FN +++   + +A S   G    ++  +       +   L     S  +
Sbjct: 4   KIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAERVADFIESSLDRRIPSVEE 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+      +   +  E  +AK    F+L             +  +    EM     +   
Sbjct: 64  LQD-----AVEKVLIETGHAKTAKEFILY------------RADRTKVREMNTRLMK--- 103

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLHIN 310
                 V   L  +   D DL     ++  +        +   G +  Y+ Y L   
Sbjct: 104 ------VYEELTFKDAKDNDLKRENANIDSDTAMGTMLKYGSEGAKQFYEMYVLKPE 154


>gi|270717088|ref|ZP_06223220.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
 gi|270315576|gb|EFA27785.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
          Length = 131

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    + Y+   A 
Sbjct: 1   LEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSAN 60

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +   +     
Sbjct: 61  DLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLDSLTQ----E 116

Query: 741 TSRLPWDELKKRVKT 755
                W+ L+K ++ 
Sbjct: 117 PLHYDWESLRKDIQE 131


>gi|89893143|ref|YP_516630.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense Y51]
 gi|89332591|dbj|BAE82186.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 789

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI KA  A  GK    S+        L  + V   L+ N 
Sbjct: 3   TKIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSL--------LLAEEVVNYLEVNL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR   +            +  
Sbjct: 55  HKKVPSVEEIQDAVEKILIERGHARTAQEFILYRAERTRVREMDTRLMKVYEELTFKEAK 114

Query: 149 MDDGTLISFNSK 160
            +D    + N  
Sbjct: 115 DNDMKRENANID 126


>gi|83592612|ref|YP_426364.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575526|gb|ABC22077.1| ATP-cone [Rhodospirillum rubrum ATCC 11170]
          Length = 673

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P +  P P       V+KR+G    FD  KI  AI +A  A        +         L
Sbjct: 3   PEIVSPPPG------VVKRSGRTVPFDAVKIRSAIERAGKATGDFDPIEA--------QL 48

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
                 ++L H  +    HIE IQD VE  L+ + H    R Y++YRE+ + +R  +   
Sbjct: 49  LAIQAVKVLSHRFTEDAPHIEQIQDVVEQVLISANHFATARAYIVYREQHARLRIDRKTV 108

Query: 136 KS 137
             
Sbjct: 109 VD 110


>gi|167630139|ref|YP_001680638.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
 gi|167592879|gb|ABZ84627.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
          Length = 712

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 114/351 (32%), Gaps = 74/351 (21%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  F  SKI+ AI +A  AV G+    ++        LT   +  L +   +
Sbjct: 4   QIRKRDGRIVEFHESKITDAIFRAAKAVGGEDKQMAME-------LTLAVLKAL-KGRYN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +ED+QD VE  L+++GH +  + Y++YR  R+ +R A+S       +   LK   
Sbjct: 56  GNVFSVEDVQDMVEKVLIENGHARTAKAYIIYRNSRTRIRDAKSDLMD--AVQEILKETN 113

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            +   +S +     + + E        S    L+                          
Sbjct: 114 RENANVSNSPSAKVLQISEVA------SVNYYLNRVI----------------------- 144

Query: 210 IEKEPNYAKVTAR---FLLEKL--RREVLTTVYKKPQKATHHEMQCLYPE-YFCRYIEEG 263
               P    V  R     +  L    + LT +     +         +      + I+  
Sbjct: 145 ----PEDEAVAHREGDIYIHDLAWYGKTLTCLQIPLGRLLSEGFDNGHGYIRPPKSIKTA 200

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                +       D+    +   ++RD          +   Y                +R
Sbjct: 201 AALAAIILQSNQNDMHGGQSFAYFDRDM------APYVKAEYARQEKD----------LR 244

Query: 324 VAMGLALKETEKEKR--------AVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
            A+     E ++EK           E Y  +  F +  +T     +G + P
Sbjct: 245 AALAALEIEVDEEKLQALVMERVENETYQAMEGFIYNLNTM-HSRAGAQVP 294


>gi|302669154|ref|YP_003832304.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396818|gb|ADL35722.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
          Length = 798

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F+ SKIS AI KAF+A++    S        + +L    V    +   
Sbjct: 2   YQVVKRDGKIADFNISKISSAITKAFIALDKDYHSS-------VIDLIALRVASDFEGKV 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           +   + +E+IQD VE  L ++G+  + + Y+LYR++R  VR   S 
Sbjct: 55  ADGKITVEEIQDSVEKVLSEAGYTDVAKAYILYRKQREKVRNVNSA 100


>gi|206890756|ref|YP_002248349.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742694|gb|ACI21751.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 1385

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKR+G +  FDP KI+ AI KA  A        + R+   +  L E+ +         
Sbjct: 4   NIIKRDGRIVPFDPEKITVAISKAGKATGEFDYDTAKRLTIKVLLLAEELIR-------- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKI 147
               H+E+IQD VE  L+ S + K  + Y++YR++ + +R    Q   +       K+  
Sbjct: 56  DRDPHVEEIQDIVEEILLSSPYRKTAKAYIIYRDQHARMREIARQGGLELIDNYLSKVDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            + + + +SF+ + L   + 
Sbjct: 116 RISENSNMSFSLQGLNNYIS 135


>gi|295111909|emb|CBL28659.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Synergistetes bacterium SGP1]
          Length = 772

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI +A  AV   G             LTE+ V   ++    
Sbjct: 4   RIRKRDGREVPFNAEKIAGAIGRALAAVGEPGT--------EAMPLTERVVAH-MEQKLQ 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L++SG  +  + Y+LYR  RS  R  +SH  +            
Sbjct: 55  GGVPQVEEIQDIVEEVLIESGRARAAKAYILYRASRSRAREMKSHLMNVYEALTFRDAQD 114

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 115 SDLKRENANID 125


>gi|237747114|ref|ZP_04577594.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
 gi|229378465|gb|EEO28556.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
          Length = 687

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
           +++      PS+  P P+     ++IKR+G    FD  +I+ A+ KA  A    G     
Sbjct: 9   IDREASQPAPSVLPPLPQ-----RIIKRDGAEVPFDARRITVALTKAGRATGDFG----- 58

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
             +D  + LT++T+ ++L+H        +E +QD VE  L+ + H K  R Y  YR++R 
Sbjct: 59  --EDEAQLLTQRTL-KVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAYATYRDQRH 115

Query: 127 DVRAAQSHSKSDAPIAPK 144
            +R  +      A    +
Sbjct: 116 RLRQDRRTLVDVASSVEE 133


>gi|309775960|ref|ZP_07670952.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916242|gb|EFP61990.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 792

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G ++ FD +KIS AI KAF AVE +           I ++    VT   +   
Sbjct: 2   YQVIKRDGKISEFDIAKISNAITKAFEAVERQYHPS-------IIDMLALRVTSDFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S 
Sbjct: 55  KNDRIQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKST 100


>gi|188584769|ref|YP_001916314.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349456|gb|ACB83726.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 736

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 9/111 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             +V+KR+G    FDPSKI+ AI KA  A++ +  S ++        LT Q + +L +H 
Sbjct: 16  PTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALS-------LTYQVINKLTKHG 68

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
                  +  IQ+ VE SLM +GH+++ R YV+YR +R  +R A +    +
Sbjct: 69  VDK--PTVPQIQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKE 117



 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  DG    F+  ++   +++A   +      + LS TY  + + L++  ++   +  
Sbjct: 18  KVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTY-QVINKLTKHGVDKPTVPQ 76

Query: 206 SRTLIEK---EPNYAKVTARFLLE------------KLRREVLTTVYKKPQKATHHEMQC 250
            + ++E    +  + +V   +++             KL +E+L  +  + Q+  +     
Sbjct: 77  IQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLKVLETRDQENANVNGDA 136

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYERDFA 292
              +      E   +  L H +  +    +    +  ++ DFA
Sbjct: 137 PMGKMLKGGSEAMKEVYLNHFAKNEHSQAHRNGYIHIHDADFA 179


>gi|323704571|ref|ZP_08116149.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536033|gb|EGB25806.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 692

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K ++VIKRNG    FD +KI+ A+ KAF AV     + +++V + +              
Sbjct: 3   KNMKVIKRNGKEEEFDRAKIANAVNKAFEAVGEGEYNDALKVAEEVTEYI---------G 53

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           N       +E+IQD VE  L++ G  K  + Y+LYR++  D+R  ++       +  +
Sbjct: 54  NNFEGCASVEEIQDIVEQFLIKHGFAKAAKAYILYRKQHQDIREFKNMFMDIEKMVDE 111


>gi|317056536|ref|YP_004105003.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448805|gb|ADU22369.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 762

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G     ++        L+ + V  L+ +N 
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGGSDYETALE-------LSGKVVDMLMANNI 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S     +E+IQD VE  L++ GH    + Y+LYR ER+  R   +               
Sbjct: 56  S--TPTVEEIQDCVEKVLIEEGHAATAKSYILYRSERTRAREMDTRLMKVYEDLTFSSAE 113

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 114 DSDLKRENANID 125


>gi|225575072|ref|ZP_03783682.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037742|gb|EEG47988.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
          Length = 789

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  FD  KIS AI KAF A E   +         + +L    VT   Q   
Sbjct: 2   FQVVKRDGEIAEFDLQKISNAICKAFEAKEKHYSED-------MMSLLALRVTADFQDKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           +   + +EDIQD VE  L+Q+G+  + + Y+LYR++R  VR  +S 
Sbjct: 55  ADEQISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKVRNMKST 100


>gi|332295915|ref|YP_004437838.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
 gi|332179018|gb|AEE14707.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
          Length = 758

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 15/158 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FD  +I RAI KAF AV     +         K L  +   +L +  K  
Sbjct: 67  VKKRDGRVVPFDIFRIERAIAKAFKAVGEHLGAE--------KELAARVSKKLYRQYKEQ 118

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA------QSHSKSDAPIAPK 144
            +V IE IQD VE  L+++G  K+ + Y+LYR +R + R          H   D      
Sbjct: 119 EVVDIERIQDVVEEVLIENGFAKVAKAYILYRRKRQEARENLSCAVDIEHIIQDYLHQED 178

Query: 145 LKIMMDDGTLISFNSKRLEMIVE-EACSGLQDVSSKIV 181
            +   +  T  S+    L       A   L  +    V
Sbjct: 179 WRTNENSNTTYSYPGLVLHAAGSVMAHYTLNRIYPDEV 216


>gi|257064524|ref|YP_003144196.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256792177|gb|ACV22847.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 816

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F   KIS AI KAF A+  +           +  L    VT   +   
Sbjct: 2   YQVVKRDGKIVDFSIDKISVAITKAFDALNKQYHPS-------VIELIALHVTSDFEDKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L +SG+  + + Y+LYR +R  VR   S 
Sbjct: 55  VDDKITVEDIQDSVEKVLSESGYADVAKAYILYRRQREKVRNVNSA 100


>gi|312114579|ref|YP_004012175.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219708|gb|ADP71076.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 685

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           + P            + ++KR+G +  FD +KI  A+ +A  A     A+ +        
Sbjct: 3   SSPDSTAVVSAARLPLSIVKRSGALAPFDAAKIRSAVERAGRATGDFDATEA-------- 54

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +L      +++ H  ++   HIE+IQD VE  L+ + H    R Y++YRE+R+ +RA + 
Sbjct: 55  HLLAIQAVKVIAHRFASRSPHIEEIQDIVEQVLISANHFATARAYIVYREQRARLRADRH 114

Query: 134 HSKSDAPIAPK 144
            +        +
Sbjct: 115 AAIDVESSMNE 125


>gi|158321089|ref|YP_001513596.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158141288|gb|ABW19600.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 710

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 102/278 (36%), Gaps = 38/278 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KRNG +  F+  KI  AI  A  +V G    ++ ++  I   +  +T          
Sbjct: 5   KVQKRNGEIVDFNGGKIKEAIFAAAKSVGGSNEVQATKLSKISIEILNET--------YG 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD VE  L++ GH K  + Y+LYR++  ++R  ++       +  +   + 
Sbjct: 57  TGVPSVEDIQDIVEKVLIEEGHAKTAKAYILYRKKHEEIREIKNLFMDAEKMIEEYVNLE 116

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           D     + N              LQ +++ IV S + K   + +   +L  A I     +
Sbjct: 117 DWRVNENSNMG----------FSLQGLNNHIVESISKKYWLNKIYRKELRDAHIKGDLHI 166

Query: 210 IEKEPNYAKVTARFLLEKLR-------REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                +   +        L        +     V  KP K     +  L       Y  +
Sbjct: 167 ----HDLGLLAPYCCGWDLEDFLRRGFKGAKGKVESKPPKHFESALGQL---VNLLYTLQ 219

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           G  A     S +D    YLA  + Y+      Y  ++ 
Sbjct: 220 GEAAGAQAVSSID---TYLAPFIYYD---NLSYEQVKK 251


>gi|223985352|ref|ZP_03635422.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
 gi|223962678|gb|EEF67120.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
          Length = 399

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +T FD SKIS AI KAF A + +  S        + ++    VT   +   
Sbjct: 2   YKVVKRDGMITEFDISKISLAITKAFEAQQKQYHSS-------VIDMLALRVTADFEGKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S 
Sbjct: 55  KNDLIQVEDIQDSVESILIQSGYSDVAKAYILYRKQREKIRNMKST 100


>gi|162448132|ref|YP_001621264.1| anaerobic ribonucleoside triphosphate reductase [Acholeplasma
           laidlawii PG-8A]
 gi|161986239|gb|ABX81888.1| ribonucleoside-triphosphate reductase, anaerobic [Acholeplasma
           laidlawii PG-8A]
          Length = 762

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+P KI+ A+ KAF+A+             +   +T   + ++      
Sbjct: 4   KIKKRDGRIVRFNPEKINDAVTKAFIALGKD--------PKLADEVTTGVLNKV-DSKFK 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +EDIQD+VE +L++  +  + + Y++YRE+R+ VR   +            K   
Sbjct: 55  KQIPTVEDIQDEVERTLIELNYADVAKSYIIYREDRNKVRDRNTRLMHTYHDIAFSKSTD 114

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 115 SDLKRENANVN 125


>gi|323141415|ref|ZP_08076306.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414164|gb|EFY04992.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 708

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI  AI KA  AVE +      ++Q+I  ++  +   RLL    
Sbjct: 1   MKVIKRDGTTVDFDAAKIVVAIQKANAAVEPEFRIEEDKIQEIADSVQSRNRMRLL---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD VE SLM +G  ++ ++Y++YR +R+ VR A +   S
Sbjct: 57  ------VEDIQDMVEHSLMDAGKFELAKQYIIYRYKRALVRKANTTDDS 99


>gi|237749265|ref|ZP_04579745.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
 gi|229380627|gb|EEO30718.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
          Length = 687

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 13/131 (9%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
             PS+  P P+     ++IKR+G    FD ++I+ A+ KA  A    G       +D  +
Sbjct: 16  PTPSVLPPLPQ-----RIIKRDGADVPFDANRITVALTKAGRATGDFG-------EDEAQ 63

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT++T+ ++L+H        +E +QD VE  L+ + H K  R Y  YR++R  +R  + 
Sbjct: 64  LLTQRTL-KVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAYATYRDQRHRLRQDRR 122

Query: 134 HSKSDAPIAPK 144
                A    +
Sbjct: 123 TLVDVASSVEE 133


>gi|302386874|ref|YP_003822696.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197502|gb|ADL05073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 788

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG    F  +KI+ AI KAF A + +         + I  L    VT   Q   
Sbjct: 2   IQVVKRNGESAEFSLNKITEAIKKAFKATQKEY-------NNEILELLSLRVTADFQGKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           S   V +E IQD VE  L Q+G+  + + Y+LYR++R  +R  +  
Sbjct: 55  SGGQVTVEQIQDSVEHVLEQAGYTDVAKAYILYRKQREKIRNMKDT 100


>gi|283796119|ref|ZP_06345272.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|291076335|gb|EFE13699.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
          Length = 898

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  F+ +KI+ AI KAF A   + +         I  L    VT   Q   
Sbjct: 100 INVIKRDGEIADFNLAKITNAIKKAFKATSNEYSQE-------ILELLSLRVTADFQPKL 152

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               + +E+IQD VE  L Q+G+ ++ + Y+LYR++R  +R  +
Sbjct: 153 KNGKISVEEIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMK 196


>gi|239623883|ref|ZP_04666914.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521914|gb|EEQ61780.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 688

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   KIS AI KAF A             DII  L+ +  +   +  +  
Sbjct: 4   VVKRDGETVEFQLEKISSAIKKAFKATGK------SYTDDIIDLLSIRVTSDFQRKMRDG 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R  +  +  
Sbjct: 58  R-ISVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLEKTTLD 103


>gi|323692184|ref|ZP_08106427.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503758|gb|EGB19577.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 790

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A +             I  L    VT   Q   
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKATKNDYNQE-------ILELLSLRVTADFQSKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +   V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R  +
Sbjct: 55  TDGKVSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMK 98


>gi|206896391|ref|YP_002246379.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739008|gb|ACI18086.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 696

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  F+  KI+ AI KA  A            +D+ + L  + V  + Q     
Sbjct: 5   IRKRDGRIVPFEAEKITNAIAKAGQATGEFD-------RDVAQKLMIKVVN-VAQTVIKE 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKIM 148
            I  +E IQD VE  L+ S + K  + Y++YRE+ + +R   S + SD       ++   
Sbjct: 57  EIPSVEQIQDIVEEVLLDSPYRKTAKAYIIYREDHAKMREIVSKANSDLVDQYLERIDWQ 116

Query: 149 MDDGTLISFNSKRLEMIVE 167
           +++ + +SF+ + L   + 
Sbjct: 117 VNENSNMSFSLQGLNNYIS 135


>gi|323486670|ref|ZP_08091991.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
 gi|323400051|gb|EGA92428.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
          Length = 790

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A +             I  L    VT   Q   
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKATKNDYNQE-------ILELLSLRVTADFQSKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +   V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R  +
Sbjct: 55  TDGKVSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMK 98


>gi|313898389|ref|ZP_07831926.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312956771|gb|EFR38402.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 792

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G ++ FD +KIS AI KAF AVE +           I ++    VT   +   
Sbjct: 2   YQVIKRDGKISEFDIAKISNAIQKAFDAVERQYHPS-------IIDMLALRVTSDFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S 
Sbjct: 55  RHDRIQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKST 100


>gi|297569531|ref|YP_003690875.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925446|gb|ADH86256.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 741

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 17/186 (9%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++   +   D  P+ ++  P       + KR+  +  F   KI+ AI KA       G 
Sbjct: 5   PTQPQPQATTDHQPAASHTTPRSQLFSVIRKRDQRLVPFAAEKITNAIHKAGEVTGELGP 64

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQH------NKSALIVHIEDIQDQVECSLMQSGHHKITR 116
             + R+   +  + +      L        +++A +  +E+IQD VE  L+ S + K  +
Sbjct: 65  PEARRLTMQVLAIAQNFFGEQLNRSAPAAGDQAAAVPSVEEIQDLVEEVLLSSPYKKTAK 124

Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK-RLEMIVEEACSGLQD 175
            Y+LYR++ + +R   + +  D          + DG L   + + +    +  +  GL +
Sbjct: 125 AYILYRDQHARIREMVTKTDLD----------LIDGYLQKLDWQVQENSNMSYSLQGLNN 174

Query: 176 VSSKIV 181
             S  +
Sbjct: 175 YVSSEI 180


>gi|288942003|ref|YP_003444243.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
 gi|288897375|gb|ADC63211.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
          Length = 683

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
               +V+KR+G    FD  KI  AI +A  A    GA+ +         L  Q +  L  
Sbjct: 9   TPPTRVVKRDGQEVRFDAGKIESAIRRAGQASGEFGAAEAS-------LLAAQAIKVLTH 61

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 +  IE IQD VE +L+ + H +  R Y++YRE+ + +R 
Sbjct: 62  RFSDGRLPDIEGIQDVVEQTLIAANHFETARAYIVYREQHNKLRT 106


>gi|160941957|ref|ZP_02089280.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435121|gb|EDP12888.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
          Length = 806

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G V  F  +KI+ AI KAF A        S    + I  L    VT   Q+  
Sbjct: 2   IQVVKRDGEVAEFSLNKITEAIKKAFRAT-------SKDYNNEILELLSLRVTADFQNKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S 
Sbjct: 55  KDGRISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNST 100


>gi|228990451|ref|ZP_04150416.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996552|ref|ZP_04156191.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004202|ref|ZP_04162003.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757063|gb|EEM06307.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763184|gb|EEM12092.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768977|gb|EEM17575.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 221

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 15/222 (6%)

Query: 226 EKLRR--EVLTTVYKKPQKAT-HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            +L +  E L    ++ +  T H +      EY  ++  +     L    + + + VY  
Sbjct: 6   YQLHKDKEALEVFMEEARANTVHFDSVAERIEYMNKH--DYYYNVLDEYKLEEVEEVY-- 61

Query: 283 NDLKYERDFAFE-YLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRA 339
            ++ Y  +F F+ Y+     Y  Y L  N  +  +E  +     V++ L   +  K   A
Sbjct: 62  -NVAYGENFEFQSYMAASKFYKDYALKTNNQKQYLESYEDRVSIVSLYLGRGDVNK---A 117

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +F +++   ++  +TPT  N+G  R  ++ SCFL  + D L  I   +     L+K  G
Sbjct: 118 KQFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGG 177

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           G+  + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 178 GVALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|293356092|ref|XP_002728828.1| PREDICTED: ribonucleotide reductase M1 [Rattus norvegicus]
          Length = 151

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHN--- 109

Query: 263 GVKARLLHESMMDFDL---VYLANDLKYERDFAFEYLGLQI 300
           G  + ++  S ++  +     L + + Y+RDF++ Y G ++
Sbjct: 110 GRHSPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKV 150


>gi|258514358|ref|YP_003190580.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778063|gb|ACV61957.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1197

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G   SFD  KI+ AI +A  +V G+        + +   LT + + ++++   + 
Sbjct: 5   IKKRDGREVSFDDKKITDAIFRAARSVGGED-------RQLAMELTIEVL-KMIKAKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               +ED+QD VE  L+++GH +  + Y+LYR+ R+ +R A+        
Sbjct: 57  NAFGVEDVQDIVEKVLIENGHARTAKAYILYRDRRTRMREAKGELMDAVE 106


>gi|160931567|ref|ZP_02078962.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
 gi|156869438|gb|EDO62810.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
          Length = 795

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 18  LAYPFPEKIKGV--QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           ++  F  + + +  ++IKR+G    F+  KIS AI KA  A+ G           + + L
Sbjct: 2   VSKVFKGEERSMIERIIKRDGREVPFEIDKISTAIYKAAEAIGGHNRG-------VAEEL 54

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            +Q V   ++  +      +E IQD VE +L++SGH +  +EY+LYR +R+  R   +  
Sbjct: 55  AKQ-VEDYIEKEEKISTPTVEHIQDVVERTLIESGHSRTAKEYILYRADRTRHREMNTRL 113

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSK 160
                         +D    + N  
Sbjct: 114 MKIYEDLTFKAAKDNDIKRENANID 138



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 22/166 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +I+  DG  + F   ++   + +A              E       G++E      L   
Sbjct: 16  RIIKRDGREVPFEIDKISTAIYKAA-------------EAIGGHNRGVAEE-----LAKQ 57

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
               IEKE   +  T   + + + R ++ + + +  K                     + 
Sbjct: 58  VEDYIEKEEKISTPTVEHIQDVVERTLIESGHSRTAKEYILYRADRTRHREMNTRLMKIY 117

Query: 266 ARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFL 307
             L  ++  D D+     ++  +        +   G +  Y+ Y L
Sbjct: 118 EDLTFKAAKDNDIKRENANIDGDTAMGTMLKYGSEGAKQFYEMYIL 163


>gi|293402281|ref|ZP_06646419.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304388|gb|EFE45639.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 790

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +VIKR+G VT FD +KI+ AI +AF +V+ +           + ++    VT   +   
Sbjct: 2   YKVIKRDGKVTDFDIAKITIAITQAFESVQRQYHPS-------VIDMLALRVTSDFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               +H+EDIQD VE  L+Q+ +  + + Y+LYR++R  +R  +S 
Sbjct: 55  KEERIHVEDIQDSVEDVLIQADYADVAKSYILYRKQREKIRNMRST 100



 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETA 201
           K++  DG +  F+  ++ + + +A   +Q      V+         +    + E  +   
Sbjct: 3   KVIKRDGKVTDFDIAKITIAITQAFESVQRQYHPSVIDMLALRVTSDFEPKIKEERIHVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
            I  S   +  + +YA V   ++L   R++
Sbjct: 63  DIQDSVEDVLIQADYADVAKSYILY--RKQ 90


>gi|167772499|ref|ZP_02444552.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
 gi|167665602|gb|EDS09732.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
          Length = 804

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD  KI+ AI KA  A+ G          ++ K L  Q V   L      
Sbjct: 36  IIKRDGRCVLFDADKIASAIFKAAQALGGNDY-------EMAKALAGQ-VASYLDEQYGD 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE +L++SGH +  +EY+LYR +R+ VR   +                +
Sbjct: 88  ESPSVEQIQDAVERTLVESGHARTAKEYILYRAQRTRVRDMGTRLMKTYEELTYKSADEN 147

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 148 DIKRENANID 157


>gi|114567781|ref|YP_754935.1| anaerobic ribonucleoside triphosphate reductase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338716|gb|ABI69564.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 718

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+  KI++AI KA  AV GK    ++ + D +  + +            
Sbjct: 5   KIKKRDGRIVPFEKEKITKAIWKAAQAVGGKDYQTALDLTDKVVEIAQYV--------DD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             I  +E IQD VE  L+++G++K  + Y+LYR++  D+R    
Sbjct: 57  DEIATVEGIQDLVERVLVKNGNYKTAKAYILYRKQHEDMRETNQ 100


>gi|304317367|ref|YP_003852512.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778869|gb|ADL69428.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 692

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    F+  KI+ AI KAF AV+    + ++++ D         VT+ ++ N
Sbjct: 4   AMKVIKRNGMEEEFNKEKIANAIYKAFEAVDEGEYNDALKIADE--------VTKYIEEN 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 ++E IQD VE  L++ G  K  + Y+LYR++  D+R  ++       +  +
Sbjct: 56  FDGYA-NVEQIQDIVEQFLIRGGFAKAAKAYILYRKQHQDMREFKNMFMDIEKMVDE 111


>gi|327197763|ref|YP_004301461.1| gp128 [Brochothrix phage A9]
 gi|299810363|gb|ADJ53162.1| gp128 [Brochothrix phage A9]
          Length = 727

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKS 649
            S   +   CNLGS  +     + +    +    +   +R L  V    +   +   KK 
Sbjct: 543 YSEVGQDISCNLGSTVISNMMDSGK----EFGDKVELMMRALTKVSMSTSIEEVPTIKKG 598

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAY 708
           N    ++GLG MG  S L  + I Y   ++ +  +     ++++++ AS +L++E   +Y
Sbjct: 599 NDLTHSVGLGAMGLHSYLADMEIMYGDEQSKDFTNMYFLLLNYYSLKASNKLSKEAGNSY 658

Query: 709 SSFKGSLWDQGVFPIDSIG---------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
             F+ S +  G +    +           +AE+ +++  +  +   W +L++ V+  G+ 
Sbjct: 659 YGFENSTYASGEYFDTYLANNDLAPRTERVAELFEDI--HIPTVEDWRQLQQEVQAFGLF 716

Query: 760 NSNCMAIAPT 769
           N   MA+AP 
Sbjct: 717 NKYRMALAPY 726



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 10/206 (4%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            +R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + V  +    L
Sbjct: 1   MQRNGAGAVYLNVFHPDIINFLATKKENADEKVRIKTLSMGLILPDKFYELVGNDDYMYL 60

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP +V   +        I  E Y+   +   I   R I A  L  ++  +  E G+P+I
Sbjct: 61  FSPYDVEREYGKPFSYINIT-EEYDNLVENKSITKSR-IKARQLNDEISKLQQEAGYPYI 118

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNL----GSINLLAHFANNQ 615
             +D  N+ +     G V  SNLC   +  +N+      + +L       N++       
Sbjct: 119 INEDTVNLANAGD--GKVIMSNLCLTGDTRINTDIGYRKLEDLHTTQDDFNVVVDNRAKN 176

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCH 641
            D +    ++ ++ +V+    D + +
Sbjct: 177 MDINDYGVSLTSSTKVVKTAEDADVY 202


>gi|325681522|ref|ZP_08161047.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324106789|gb|EGC01080.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 756

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G     ++        L+ + V  L+  N 
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGGSDYETALE-------LSGKVVDMLMAKNV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             +   +E+IQD VE  L++ GH    + Y+LYR  R+  R   +               
Sbjct: 56  --ITPSVEEIQDCVEKVLIEEGHAATAKSYILYRSMRTKAREMDTRLMKVYEDLTFKSAE 113

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 114 DSDLKRENANID 125


>gi|187251595|ref|YP_001876077.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971755|gb|ACC98740.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 690

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P  E IK   ++KR+G    FD +KI++AI KA       G       +D+   LT + +
Sbjct: 2   PKSEIIKN--IVKRDGTKQKFDAAKITKAISKAGQVTGEFG-------EDVASKLTIRVI 52

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-- 138
             ++Q   S  +  +E+IQD VE  L+ S +HK  + Y++YRE+ S +R   S    D  
Sbjct: 53  N-IIQQLYSDSVPTVENIQDIVEDVLLTSNYHKTAKSYIIYREQHSKIREIHSKFNVDLV 111

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVE 167
                K+   +++ + +S++ + L   + 
Sbjct: 112 EQYLKKMDWQVNENSNMSYSLQGLNNYIS 140


>gi|317484305|ref|ZP_07943228.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
 gi|316924449|gb|EFV45612.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
          Length = 755

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+  +  FD +KI++AI +A  +  GK    S+        +  + + RL       
Sbjct: 5   IRKRDARIVPFDVNKIAQAIFRAASSQGGKDYVLSL-------KIAAEVLERL-NEQFED 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L++SGH +  + Y+LYR +R+ +R   +   +            +
Sbjct: 57  AVPDVEQVQDLVEKTLIKSGHARTAKAYILYRHQRTKIREMNTRLMTTIRDLTFKDAKDN 116

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 117 DLKRENANID 126


>gi|154496758|ref|ZP_02035454.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
 gi|150274010|gb|EDN01110.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
          Length = 773

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD  KI  AI +AF A    G       +D  + L ++ ++ L    +  
Sbjct: 6   IRKRDGRLMPFDEEKIVHAIARAFNATYKPGH------EDTARKLADEVLSIL--EVEGN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE  LM  G+ +  + Y+LYR +RS VR   +                 
Sbjct: 58  QQPDVEHIQDLVERVLMDDGYIQTAKAYILYRSDRSRVREMNTRLMKIYEDITFSAAKDS 117

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 118 DIKRENANID 127


>gi|288817532|ref|YP_003431879.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786931|dbj|BAI68678.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751135|gb|ADO44618.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
          Length = 701

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD S+I RA+ KAF AV           Q I+  L E  VT++L   K  
Sbjct: 21  VVKRDGILVPFDRSRIQRAMFKAFKAVGEFVE------QSILDELVEDVVTKVLSLGKQ- 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             VH+E+IQD VE +L+  G  K  + Y+LYR+ R ++R   +       +  +     D
Sbjct: 74  -RVHVEEIQDLVEETLILHGFAKTAKAYILYRKRREELRDISNAIVDAERVVQEYIHKQD 132


>gi|301061755|ref|ZP_07202495.1| ATP cone domain protein [delta proteobacterium NaphS2]
 gi|300444143|gb|EFK08168.1| ATP cone domain protein [delta proteobacterium NaphS2]
          Length = 302

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+ SKI  AI KA  A    G   +       K+LT + + +  +    
Sbjct: 4   KIKKRDGEIVPFNDSKIRAAIFKAGKATGEFGGQAA-------KSLTRRVLKKAHKSGI- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
             I  +E+IQD VE  L ++  +K  + YV+YR + + +R   + S  D        L  
Sbjct: 56  GPIPEVEEIQDIVERVLFEADFYKTAKAYVIYRHQHARIRDILNKSNFDLVENYLQNLDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            + + + ++++ + L   + 
Sbjct: 116 KIHENSNMTYSLQGLNNRIS 135


>gi|193214402|ref|YP_001995601.1| anaerobic ribonucleoside triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087879|gb|ACF13154.1| anaerobic ribonucleoside-triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 699

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + +FD  KI+ AI+ A  A    GA  +  + +++ NL  +T+         
Sbjct: 7   QIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTL--------G 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E+IQD VE  L+QS + K  + Y+LYR++   +R 
Sbjct: 59  EKTPSVEEIQDLVERVLLQSPYMKTAKAYILYRDQHHKIRE 99


>gi|227824829|ref|ZP_03989661.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905328|gb|EEH91246.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 713

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+QVIKR+G   SFD  KI  AI KA  AVE         +  I   +  +   R L   
Sbjct: 5   GMQVIKRDGSTVSFDRHKIVVAIQKANKAVEEGERLPESDIDTIASFVEGKKRKRFL--- 61

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                  +EDIQD VE  +M  G +++ + Y++YR  R+ VR A +  +S
Sbjct: 62  -------VEDIQDMVEKQIMNRGRYELAKAYIIYRYNRALVRKANTTDES 104


>gi|225569137|ref|ZP_03778162.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
 gi|225161936|gb|EEG74555.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
          Length = 788

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD +KIS AI KAF A E +        QDII  L  + VT   +   
Sbjct: 2   YQVTKRDGQIAKFDITKISEAISKAFAAQEKEYN------QDIIDLLALK-VTADFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              +V +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S    
Sbjct: 55  KNSLVQVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNSTMLD 103


>gi|292491694|ref|YP_003527133.1| ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
 gi|291580289|gb|ADE14746.1| Ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
          Length = 1129

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD S+I+ AI +A  A +    +           ++++ +  L Q   +
Sbjct: 11  QVRKRDGRLVPFDQSRITHAIFRAMEASKEGDLAHDPS------RVSDKVIAELNQQYPA 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             I  +E+IQD VE +L+     K  + Y+LYR +R+ +R 
Sbjct: 65  THIPQVEEIQDLVEETLILMEFAKTAKAYILYRHKRAQIRK 105



 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 94/321 (29%), Gaps = 58/321 (18%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSE----- 195
           ++   DG L+ F+  R+   +  A        L       V  +    +           
Sbjct: 11  QVRKRDGRLVPFDQSRITHAIFRAMEASKEGDLAH-DPSRVSDKVIAELNQQYPATHIPQ 69

Query: 196 -SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +++  +  +   +   +   A +  R    ++R++      K  Q AT  E +  +  
Sbjct: 70  VEEIQDLVEETLILMEFAKTAKAYILYRHKRAQIRKKAKAVPEKVKQLAT--ESKSFFSN 127

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
               +I     +R L E       +        ER     Y+          L  + S +
Sbjct: 128 ALAEFIYYRTYSRWLEEENRRETWIETV-----ER-----YMAFMK-EK---LGKDLSSV 173

Query: 315 EMPQAFF-----------MRV---AMGLALKE------------TEKEKRAVEFYNLLSS 348
           E  Q              MR+   A   A               T+ +  A   Y L+S 
Sbjct: 174 E-YQEIHQAILQQQVMPSMRLLWSAGKAARVNNITAYNCSFIAPTQLQDLAEILYLLMSG 232

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTT---VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
                S  +         Q  +  +     V D   G   AL+           +  D++
Sbjct: 233 VGVGFSVESQNVQQLPIIQRQTGEILPTYKVGDSKEGWGDALKAGLQAWYDGKDIRFDYS 292

Query: 406 PVRGLGAHIHGTNGKSQGVIP 426
            VR  G+ +H   G+S G  P
Sbjct: 293 EVRPAGSRLHTMGGRSAGPEP 313


>gi|303257842|ref|ZP_07343852.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
 gi|302859445|gb|EFL82526.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
          Length = 673

 Score =  121 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P     + VIKR+G V  FD SKI+ A+ KA  A     A+ + R+  I      + + R
Sbjct: 3   PTMETPMYVIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHI------EVMNR 56

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L Q N +     IE IQD VE +L  +G  K  R Y++YRE+R+  R A+          
Sbjct: 57  LAQQNVA--TPTIEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDARRSLVDVESSM 114

Query: 143 PK 144
            +
Sbjct: 115 NE 116


>gi|90425006|ref|YP_533376.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisB18]
 gi|90107020|gb|ABD89057.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodopseudomonas
           palustris BisB18]
          Length = 673

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
                +VIKR+G    FDP+KI  AI +A  A        +        +L      +++
Sbjct: 7   ATPPRRVIKRSGEQAPFDPAKIHSAIERAGKATAEFDRPEA--------DLLGIQAIKVI 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            H       HIE IQD VE  L+ + H    R Y++YRE+R+ +R  +     
Sbjct: 59  SHRFIDQAPHIEQIQDVVEQVLISANHFATARAYIVYREQRARLRRDRHTVVD 111


>gi|284048540|ref|YP_003398879.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952761|gb|ADB47564.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 802

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD +KIS AI KAF A+             II  L  Q VT         
Sbjct: 4   VVKRDGQIVDFDVTKISSAITKAFEALHKNYHPS------IINMLALQ-VTADFDPKIKD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQD VE  L  SG+  + + Y+LYR++R  +R   S
Sbjct: 57  DRISVESIQDSVEKVLSDSGYADVAKAYILYRKQREQIRNVNS 99



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----SETYKNMYDGLSESDLETAL 202
           ++  DG ++ F+  ++   + +A   L       ++     +   +    + +  +    
Sbjct: 4   VVKRDGQIVDFDVTKISSAITKAFEALHKNYHPSIINMLALQVTADFDPKIKDDRISVES 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  S   +  +  YA V   ++L   R++             + ++   Y       ++E
Sbjct: 64  IQDSVEKVLSDSGYADVAKAYILY--RKQREQIRNVNSSLLNYKDLVDNYLHVNDWRVKE 121


>gi|95931058|ref|ZP_01313785.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132867|gb|EAT14539.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 662

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  KIS AI KA  AV G+  +++       + +T Q V  L    K  
Sbjct: 5   IRKRDGRLAAFEEGKISEAIKKAVRAVGGQDMTKA-------EEITRQVVGILEIIYKDD 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               +E++QD VE  L++SGH +  + Y+LYR +   +RA +S  + 
Sbjct: 58  RAPTVENVQDLVEKQLIESGHAQTAKAYILYRRQHEQLRATKSFMQE 104


>gi|20026646|ref|NP_612688.1| ribonucleotide reductase subunit 1 [Panine herpesvirus 2]
 gi|19881074|gb|AAM00694.1|AF480884_46 ribonucleotide reductase large subunit UL45 [Panine herpesvirus 2]
          Length = 945

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/518 (16%), Positives = 156/518 (30%), Gaps = 80/518 (15%)

Query: 321 FMRVAMGL-ALKETEKEKRAVEFYNLLSSFHF---------------MCSTPTLFNSGTR 364
           F+RVA  + A  E   E      Y  L +                    S  T   S   
Sbjct: 360 FIRVAASVTAAIE---ESLHSRIYRFLLNVRHEAEVLEAVLRRCRDGQLSLSTFAMSTVG 416

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             ++         D      G       ++  S G+       R                
Sbjct: 417 FDKMPCYDFLISADSFARDAGWAAMCKWMSSLSCGVSVSINVTR-----------LDVDA 465

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              ++        V +    +  V  +++ W  DV     +     +       +  A  
Sbjct: 466 TSVIRCLGGYCDLVREREVHRPVVRFFVDLW--DVAAIRVINHILKECTSEPTGVCYAFN 523

Query: 485 IPDLFMKRVT-QNAGWTLFSPDEVSDLHDL-YGKEFEIAYENYERQADRGEIKVFRKISA 542
           +P L MKR   +   + LF       L DL +   F+  Y   E      E      ++ 
Sbjct: 524 VPSLLMKRYRGRQPQYCLFGRAVARRLSDLGHEAAFDREYRRCE------ESCPKVTVNT 577

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVC 600
               +K+L      G   + F       S             C   ++      E  A  
Sbjct: 578 EDFLKKVLVCALR-GRASVVFIHHVVKYSML-ACESNLCLPACLSPDMASCHFGEYDAPV 635

Query: 601 NLGSINLLAHF------------------ANNQFDYDKLASTIRTAVR----VLDNVIDI 638
               +NL                          FD   L   +  AV      LD ++  
Sbjct: 636 QRLMVNLSRCVFARSEQHEPHSPDVVLGNTRRYFDLRVLRELVTEAVIWGNARLDALVAA 695

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +E A       R + +G++G  + L  L   Y    + ++ +   E + F A+ AS
Sbjct: 696 SDWWVENAVD---RLRPLHIGVVGLHTVLMRLGFTY--FASWDLIERIFEHMYFAAVRAS 750

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           V+L +        F+ +++  G F  +        R  L++       W+ L+  +   G
Sbjct: 751 VDLCKAGLPRCDWFERTIYAGGKFIFELY-----RRPRLSLPPA---RWEALRADMLEHG 802

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           MRN   +++ P   +A++  V+ S+  +   +Y +  +
Sbjct: 803 MRNCQFLSVGPDDEVAHLWSVTPSVWAARDCVYDEETV 840


>gi|169335229|ref|ZP_02862422.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257967|gb|EDS71933.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
          Length = 777

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +++KR+G  + ++  KI+ AI KA  A  G+  + +  + D + N+        L    
Sbjct: 3   TEILKRDGRTSRYEKKKITDAIYKAAEAAGGQDYATAKELSDKVDNI--------LNEKY 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             ++  +E IQD VE +L++SGH K  + Y+LYR ER+ VR   +              +
Sbjct: 55  IDIVPTVEQIQDTVEKTLIESGHAKTAKNYILYRAERNKVREMNTKLMKIYEDLTFKSSI 114

Query: 149 MDDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYK 187
            +D    + N      +  +++    G ++     +L E + 
Sbjct: 115 ENDVKRENANINGDTAMGTMLKYGSEGAKNFYEMFILDEKHA 156


>gi|194333736|ref|YP_002015596.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311554|gb|ACF45949.1| anaerobic ribonucleoside-triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
          Length = 715

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G +  FD  KI+ AI +A  ++       + R       L+++ V RL      
Sbjct: 12  RIIKRDGTIVPFDREKITFAIFRAMRSIGKPDRGYAAR-------LSDRVVERLGSDGP- 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E+IQD VE  L +S   +  + Y++YR + S +R A+    +   +   L +  
Sbjct: 64  DRIASVEEIQDLVERLLFESREFEAAKAYIVYRHQHSSLRQAKEIFSNIDLVDDYLHLKD 123


>gi|313763785|gb|EFS35149.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA1]
 gi|313816896|gb|EFS54610.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA1]
 gi|314916660|gb|EFS80491.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA4]
 gi|314918881|gb|EFS82712.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA1]
 gi|314920892|gb|EFS84723.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA3]
 gi|314932335|gb|EFS96166.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL067PA1]
 gi|314956610|gb|EFT00862.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA1]
 gi|314959490|gb|EFT03592.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA1]
 gi|315100259|gb|EFT72235.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA2]
 gi|315102584|gb|EFT74560.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA1]
 gi|327458063|gb|EGF04718.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA2]
 gi|328757606|gb|EGF71222.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA2]
          Length = 780

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|225388054|ref|ZP_03757778.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
 gi|225045907|gb|EEG56153.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  +KI+ AI KAF A +           + I  L    VT   Q   
Sbjct: 2   IEVVKRDGEIAEFSLNKITEAIKKAFKATKKDY-------NNEILELLSLRVTADFQGKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           +   + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S 
Sbjct: 55  TEGRISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNST 100


>gi|327455910|gb|EGF02565.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA3]
 gi|328757223|gb|EGF70839.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA1]
          Length = 780

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFAPAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|160878693|ref|YP_001557661.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160427359|gb|ABX40922.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 800

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  SKIS AI KAF A +       +  +DII  L+ + VT   Q   
Sbjct: 2   IKVVKRDGEIAEFALSKISSAIAKAFNATQK------LYNEDIINLLSLR-VTSDFQTKL 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +EDIQD VE  L QSG+  + + Y+LYR+ R  +R  +S    D      + + 
Sbjct: 55  KDSTVTVEDIQDSVEHVLEQSGYTDVAKAYILYRKNREKIRNMKSTIL-DYKEIVDMYVK 113

Query: 149 MDD 151
            +D
Sbjct: 114 EED 116


>gi|313793665|gb|EFS41696.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA1]
 gi|313802977|gb|EFS44185.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA2]
 gi|313839393|gb|EFS77107.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL086PA1]
 gi|314964686|gb|EFT08786.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA1]
 gi|315079322|gb|EFT51323.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA2]
 gi|327455997|gb|EGF02652.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL092PA1]
          Length = 780

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|313829697|gb|EFS67411.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA2]
 gi|315109656|gb|EFT81632.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA2]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|50843575|ref|YP_056802.1| anaerobic ribonucleoside triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|50841177|gb|AAT83844.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|315107774|gb|EFT79750.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA1]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|289426093|ref|ZP_06427840.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
 gi|289153636|gb|EFD02350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|295109140|emb|CBL23093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus obeum
           A2-162]
          Length = 791

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F  SKI+ AI KAF A E   +   I       +L    VT   Q+  
Sbjct: 2   FQVVKRDGEIAEFQMSKITAAIDKAFDAKEKVYSKDMI-------DLMALRVTADFQNKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           +   V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S 
Sbjct: 55  TDGKVTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKST 100


>gi|282854905|ref|ZP_06264239.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|282582051|gb|EFB87434.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|314924386|gb|EFS88217.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL001PA1]
 gi|314967228|gb|EFT11327.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA2]
 gi|314981635|gb|EFT25728.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA3]
 gi|315092274|gb|EFT64250.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA4]
 gi|327328693|gb|EGE70453.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL103PA1]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|314927073|gb|EFS90904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA3]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|295131657|ref|YP_003582320.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|291375496|gb|ADD99350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|313771801|gb|EFS37767.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL074PA1]
 gi|313810623|gb|EFS48337.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA1]
 gi|313831666|gb|EFS69380.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL007PA1]
 gi|313834820|gb|EFS72534.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL056PA1]
 gi|314975016|gb|EFT19111.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA1]
 gi|314977887|gb|EFT21981.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL045PA1]
 gi|314984705|gb|EFT28797.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA1]
 gi|315095578|gb|EFT67554.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL038PA1]
 gi|327332895|gb|EGE74627.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA2]
 gi|327447723|gb|EGE94377.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA2]
 gi|327448598|gb|EGE95252.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA1]
 gi|328762022|gb|EGF75528.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL099PA1]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|167948702|ref|ZP_02535776.1| anaerobic ribonucleoside triphosphate reductase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 436

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             +V KR+G    FD  KI  AI  A  A      + +       + LT Q +  L    
Sbjct: 13  PTKVRKRDGSEVDFDLDKIRTAIRLAGQASGEYEDAEA-------QLLTAQVLKVLTHTG 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               +  IE IQD VE  L+ S H K  R Y++YRE+   +R  +  
Sbjct: 66  YREHVPDIERIQDIVEQVLISSNHLKTARAYIVYREQHKKLREDRRT 112


>gi|315094850|gb|EFT66826.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL060PA1]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|314968909|gb|EFT13007.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA1]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|289428068|ref|ZP_06429772.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|289158951|gb|EFD07151.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|313808389|gb|EFS46856.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA2]
 gi|313813745|gb|EFS51459.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA1]
 gi|313818190|gb|EFS55904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA2]
 gi|313821048|gb|EFS58762.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA1]
 gi|313824074|gb|EFS61788.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA2]
 gi|313827180|gb|EFS64894.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA1]
 gi|314961895|gb|EFT05996.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA2]
 gi|314979622|gb|EFT23716.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA2]
 gi|314988358|gb|EFT32449.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA2]
 gi|314990254|gb|EFT34345.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA3]
 gi|315082381|gb|EFT54357.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL078PA1]
 gi|315083828|gb|EFT55804.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA2]
 gi|315087288|gb|EFT59264.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA3]
 gi|315089706|gb|EFT61682.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA1]
 gi|327326632|gb|EGE68420.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA3]
 gi|327449550|gb|EGE96204.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA2]
 gi|328757413|gb|EGF71029.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL020PA1]
 gi|332676520|gb|AEE73336.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes 266]
          Length = 780

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|283768712|ref|ZP_06341623.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
 gi|283104498|gb|EFC05871.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
          Length = 732

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI +A+ KA  A E    +     +++I+ ++E  V +    N+
Sbjct: 1   MKVIKRSGEEVLFDANKIKKAVQKANEATEVHHQAG----EEVIQQISEGVVAKCKALNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           S   V +E+IQD VE +LM++  +++   Y+ YR ER+ VR A +  K    +  +
Sbjct: 57  S---VSVEEIQDMVENALMEAKVYQVAHNYITYRYERALVRKANTTDKKILSLLER 109


>gi|218780155|ref|YP_002431473.1| anaerobic ribonucleoside triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761539|gb|ACL04005.1| anaerobic ribonucleoside-triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 697

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD +KI+ AI +A  A +          +   + LT + VT L    + 
Sbjct: 4   QIKKRDGRIVPFDAAKITNAIAQAGKATDEF-------TEREARKLTLRVVT-LAHDMRL 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E++QD VE  L+ S +    + Y+LYRE+ + +R      + D
Sbjct: 56  GSIPEVEEVQDIVEHVLLDSPYFMSAKAYILYREQHAQIRRITREDRID 104


>gi|317472001|ref|ZP_07931333.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900405|gb|EFV22387.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 794

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +           + +L    VT   +     
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPS-------VIDLLALKVTSDFEPKVKN 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S 
Sbjct: 57  DVIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKST 100


>gi|125973164|ref|YP_001037074.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|256003962|ref|ZP_05428948.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281417359|ref|ZP_06248379.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|125713389|gb|ABN51881.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|255992090|gb|EEU02186.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281408761|gb|EFB39019.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|316940607|gb|ADU74641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 1313]
          Length = 696

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G +  + P KI+ AI KA  A  G    R+  +         + V  +L    
Sbjct: 3   TKISKRDGRIEKYQPEKITWAIFKAATACGGSDFGRAEELC--------RQVNEILNKQF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
              I  +EDIQD VE  L+++GH K  + Y+LYRE+R   R   
Sbjct: 55  KDRIPGVEDIQDIVEKVLIENGHAKTAKAYILYREKRKSARDLN 98


>gi|167748467|ref|ZP_02420594.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
 gi|167652459|gb|EDR96588.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
          Length = 794

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +           + +L    VT   +     
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPS-------VIDLLALKVTSDFEPKVKN 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S 
Sbjct: 57  DVIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKST 100


>gi|154505221|ref|ZP_02041959.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
 gi|153794419|gb|EDN76839.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
          Length = 792

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +T F+ +KIS AI KAF A E +        QDII  L  + VT   +   
Sbjct: 2   YQVTKRDGEITEFNLTKISEAIRKAFEAREKEYN------QDIIDLLALK-VTADFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S 
Sbjct: 55  KEHKIAVEDIQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNST 100


>gi|158320179|ref|YP_001512686.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140378|gb|ABW18690.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 773

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 135/372 (36%), Gaps = 57/372 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G    F+  KI+ AI +A  +V  +    +  + +      E+ +        
Sbjct: 3   TKITKRDGREVPFNIEKIANAIFRASKSVGEEDYEAAFNIAEQAVAYIEKEI-------- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +     +E IQD VE  L+++   +I + Y++YR ER+ +R   +               
Sbjct: 55  NNPNPSVEQIQDIVEKVLIKNEKAEIAKAYIIYRAERTRLREMNTRLMKIYEDLTFKDAE 114

Query: 149 MDDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETALI 203
            +D    + N      +  +++    G +   +  VL E Y + +    +   DL+   +
Sbjct: 115 DNDVKRENANIDGNTAMGTMLKYGSEGAKQFYNMFVLKEEYSSAHKTGDIHIHDLDFLTL 174

Query: 204 FSSRTLIE----------------KEPN----YAKVTARFLLEKLRREVLTTVYKKPQKA 243
            ++   I+                +EP     Y+ +    +      +            
Sbjct: 175 TTTCCQIDIKKLFENGFSTGHGYLREPKDIQSYSALACIAIQSNQNDQHGGQSIPNFDYG 234

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY-LANDLKYER------DFAFEYL 296
               +   Y   + + +  G++  LL +++   +LV  +  ++K E           +Y+
Sbjct: 235 IAQGVTKTYKRLYAKNLTNGIE--LLFDNIEAENLVEQVLKEIKEEHQLEPNLKMEQQYI 292

Query: 297 GLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            +    +++ L    +  +I+  Q F    A   A KET++       Y  + +     +
Sbjct: 293 EI---EEKFLLKYFKDLDKIKKAQQF----ARDRAYKETDR-----STYQAMEALIHNLN 340

Query: 355 TPTLFNSGTRHP 366
           T     +G + P
Sbjct: 341 TM-HSRAGAQVP 351


>gi|323452408|gb|EGB08282.1| hypothetical protein AURANDRAFT_8020 [Aureococcus anophagefferens]
          Length = 149

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K  H  M     +      +E
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEKL-HKHMHPKTKKPAALISDE 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
                  H+         +   + YERDF ++Y G +
Sbjct: 120 TYATVQKHK-------DAINAAIVYERDFEYDYFGFK 149


>gi|303327408|ref|ZP_07357849.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302862348|gb|EFL85281.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 755

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    FD  KI  AI KA  AV G+  S +  +      +TE+   +L +     
Sbjct: 9   IMKRDGASVPFDSVKILNAITKANQAVGGEDMSPTDLL-----FVTEKVCRKLDER---- 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            + H+E+IQD VE +L+Q  + K  + Y+LYR E + +R A+S+             + +
Sbjct: 60  SLRHVEEIQDVVEETLIQYDYAKTAKAYILYRAEHAKIRNAESYLMDIYKKLTYSPAIRE 119

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 120 DIKRENANID 129


>gi|218281714|ref|ZP_03488096.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
 gi|218217221|gb|EEC90759.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
          Length = 724

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    FD SKI  AI KA  A      S      ++I+++T+  + +     +
Sbjct: 1   MNVIKRSGEEVVFDASKIENAIKKANKATTHNQMSD-----ELIRSVTQSVINKCENLKR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           S    ++E+IQD VE  LM+     +   Y+ YR ER+ VR A S  K    +  +    
Sbjct: 56  S---PNVEEIQDMVEGELMEHRCFAVAHNYITYRYERALVRKANSTDKQIMSLLERNNEE 112

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 113 VKQENSNKNPL 123


>gi|239909067|ref|YP_002955809.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798934|dbj|BAH77923.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 699

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G + +FD  KI  A+ +A  A    G       +D    LT Q V ++L H   
Sbjct: 7   RIRKRDGQIVTFDADKILSAVRRAGAATGEFG-------EDEAWLLTAQVV-KVLSHRFI 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  IE IQD VE + + + H +  R Y +YRE+R+ +R  +      A    +     
Sbjct: 59  GQIPDIERIQDIVEQAFVSANHFRTLRAYSVYREQRARLREDKKTVVDVAASINEYLDRQ 118

Query: 150 D 150
           D
Sbjct: 119 D 119


>gi|331000300|ref|ZP_08323983.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
 gi|329572332|gb|EGG53990.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
          Length = 669

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
              + VIKR+G V  FD SKI+ A+ KA  A     A+ + R+  I      + + RL Q
Sbjct: 2   ETPMYVIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHI------EVMNRLAQ 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            N +     IE IQD VE +L  +G  K  R Y++YRE+R+  R A+           +
Sbjct: 56  QNVA--TPTIEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDARRSLVDVESSMNE 112


>gi|209963665|ref|YP_002296580.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           centenum SW]
 gi|209957131|gb|ACI97767.1| anaerobic ribonucleoside-triphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 675

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V++F+  KI  AI +A  A      + +        +L      +++ H    
Sbjct: 13  VIKRSGEVSAFNGDKIRSAIERAGKATGEFDGAEA--------HLLAIQAIKVIGHRFHT 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              HIE IQD VE  L+ + H    R Y++YRE+R+ +R  +     
Sbjct: 65  DAPHIEQIQDVVEQVLISANHFATARAYIVYREQRARLRRDRKTVVD 111


>gi|158522580|ref|YP_001530450.1| anaerobic ribonucleoside triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
 gi|158511406|gb|ABW68373.1| anaerobic ribonucleoside-triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
          Length = 730

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +T+FD  KI+ AI K+  A        +       K LT + +T L    K  
Sbjct: 5   IKKRDGRITTFDSKKITEAIAKSGKATGEFDGREA-------KKLTLRVLT-LASQMKLG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKIM 148
            +  +E+IQD VE  L+ S  +K  + Y+LYRE+ + +R    ++  K       K+   
Sbjct: 57  PVPEVEEIQDIVERVLLDSPFYKSAKSYILYREQHTQIRNIATKASVKLVENYIGKMDWK 116

Query: 149 MDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
           + + + +S++ + L   +     A   L  V    V
Sbjct: 117 IKENSNMSYSLQGLNNYISSDVTAEYWLNRVYPPEV 152


>gi|213864875|ref|ZP_03386994.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 115

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
            +I ++  LI ++ P+Y  + AR  +  LR++       +P    HH ++ +
Sbjct: 61  TIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF--EPPALYHHVVKMV 110


>gi|239625641|ref|ZP_04668672.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519871|gb|EEQ59737.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 804

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G    F  +KI+ AI KAF A +           + I  L    VT   Q   
Sbjct: 2   IQVVKRDGENAEFSLNKITEAIKKAFKATKKDY-------NNEILELLSLRVTADFQDKM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              ++ +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S 
Sbjct: 55  KEGMISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNST 100


>gi|160938866|ref|ZP_02086217.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437829|gb|EDP15589.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
          Length = 690

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    F   KI+ AI KAF A      +      DII+ L+ + VT   Q     
Sbjct: 4   VAKRDGETVEFQLDKITLAIKKAFKATGKSYTA------DIIELLSLR-VTSDFQMKIKD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R 
Sbjct: 57  SRISVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRN 96


>gi|313836260|gb|EFS73974.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA2]
 gi|314928911|gb|EFS92742.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL044PA1]
 gi|314971126|gb|EFT15224.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA3]
 gi|328906527|gb|EGG26302.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           sp. P08]
          Length = 780

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++    + KR+G V  FD +KI  A+ KAF+A       R          +  + ++RL 
Sbjct: 16  RVVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIDTTERH------AAEVALEVMSRLS 69

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS           
Sbjct: 70  EMG--EETPDVEAIQDLVEKTLMNQGHDDVAKAYILYRQRRTVARDQQSALMRTLREITF 127

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                 D    + N      +      G +
Sbjct: 128 ASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|325265173|ref|ZP_08131899.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
 gi|324029577|gb|EGB90866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
          Length = 788

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD +KI  AI KAF A E +        QDII  L  + VT   +   
Sbjct: 2   YQVTKRDGKIADFDLAKICEAIRKAFEARERQYN------QDIIDLLALK-VTADFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +ED+QD VE  L+++G+  + + Y+LYR++R  +R   S       I      +
Sbjct: 55  KKGLVSVEDVQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNSTLLDYKEIVDSYVKI 114

Query: 149 MD 150
            D
Sbjct: 115 TD 116


>gi|253580121|ref|ZP_04857388.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848640|gb|EES76603.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 792

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G V  F   KI+ AI KAF A E   +       + + +L    VT   Q   
Sbjct: 2   FQVVKRDGEVDEFKIGKITAAIHKAFDAKEKNYS-------EEMIDLLGLRVTSDFQKKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           +   + +E+IQD VE  L+Q+G+  + + Y+LYR++R  VR  +S 
Sbjct: 55  TDNKITVEEIQDSVENVLIQAGYADVAKAYILYRKQREKVRNMKST 100


>gi|303239827|ref|ZP_07326350.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302592537|gb|EFL62262.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 696

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG    F P KI+ AI KA  A  G   +++  +   + +L E T           
Sbjct: 5   IIKRNGREEKFQPEKITWAIFKAASACGGDDFTKAEGICRQVMDLAELT--------YKD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E+IQD VE  L+++GH K  + ++LYRE+R   R   +   +   +        D
Sbjct: 57  TTPTVEEIQDTVEKVLIENGHAKTAKAFILYREKRKSARDLNALVGATIDMFSDYLGDRD 116

Query: 151 DGTLISFNSKR 161
                + N+++
Sbjct: 117 WNIKENANTQK 127


>gi|225419681|ref|ZP_03761984.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
 gi|225041666|gb|EEG51912.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F   KI+ AI KAF A +           D I  L    VT   Q     
Sbjct: 4   VVKRDGEIVEFCLEKITMAIQKAFKATDKFYT-------DDILELLSIRVTSDFQKKIQE 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R 
Sbjct: 57  NRIAVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRN 96


>gi|302387220|ref|YP_003823042.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197848|gb|ADL05419.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 690

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SK+  A+ KAF A             D I  L    V    +   
Sbjct: 2   LKVIKRDGAEAGFDLSKVKEAMKKAFTATGK-------YYTDSIVELLALRVASDFKDKV 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               V +E+IQD VE  L ++G+  + + Y+LYR++R+ +R+
Sbjct: 55  KEDRVAVEEIQDSVEKVLEETGYTDVAKAYILYRKQRAKIRS 96


>gi|302672270|ref|YP_003832230.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
 gi|302396743|gb|ADL35648.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
          Length = 743

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKIS AI KA   V  +      ++ DI   + E+    L +   
Sbjct: 1   MKIIKRSGKEVDFDVSKISAAIEKANKEVTEEKRLTHGQIIDIATGV-EKLCATLTR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  LM++G   + R+Y+ YR + + VR + +  +    +  
Sbjct: 57  ---AASVEEIQDMVEDGLMRAGKFDVARKYITYRYKHALVRKSNTTDEQIMSLIE 108


>gi|257792461|ref|YP_003183067.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|317490328|ref|ZP_07948814.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325833526|ref|ZP_08165975.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|257476358|gb|ACV56678.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|316910618|gb|EFV32241.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325485450|gb|EGC87919.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 813

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G +  FD +KIS AI KAF A+E +    +I       +L    VT   +   
Sbjct: 2   YEVQKRDGKIAEFDIAKISSAISKAFDALEKQYHPSTI-------DLLALNVTAHFEPRI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
              I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A 
Sbjct: 55  KNGIISVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNAN 98


>gi|116049873|ref|YP_791318.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313111346|ref|ZP_07797161.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|115585094|gb|ABJ11109.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310883663|gb|EFQ42257.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 675

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +       
Sbjct: 15  KRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER----AC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + IE +QD VE  LM++GH+   R YV+YRE    +R  +      A    +
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERKTLVDVAASMNE 115


>gi|15597116|ref|NP_250610.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAO1]
 gi|218892122|ref|YP_002440989.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa LESB58]
 gi|254235012|ref|ZP_04928335.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296389671|ref|ZP_06879146.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAb1]
 gi|9947914|gb|AAG05308.1|AE004618_2 class III (anaerobic) ribonucleoside-triphosphate reductase
           subunit, NrdD [Pseudomonas aeruginosa PAO1]
 gi|126166943|gb|EAZ52454.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772348|emb|CAW28130.1| putative ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
          Length = 675

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +       
Sbjct: 15  KRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER----AC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + IE +QD VE  LM++GH+   R YV+YRE    +R  +      A    +
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERKTLVDVAASMNE 115


>gi|107101355|ref|ZP_01365273.1| hypothetical protein PaerPA_01002390 [Pseudomonas aeruginosa PACS2]
          Length = 675

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A  A       ++       + L E+ V RL +       
Sbjct: 15  KRNGREVPFDPGKIERAIAAAGQATGEFDPQQA-------QALAERVVERLPER----AC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + IE +QD VE  LM++GH+   R YV+YRE    +R  +      A    +
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERKTLVDVAASMNE 115


>gi|332654657|ref|ZP_08420400.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332516621|gb|EGJ46227.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 793

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G   +F+  KIS AI KAF A++ +           + +L    VT   +   
Sbjct: 2   YQVTKRDGTAATFEIGKISAAITKAFQALDKQFHPS-------VIDLLALRVTADFEPKV 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L ++G+  + + Y+LYR++R  +R   S 
Sbjct: 55  RDGRIAVEDIQDSVEAVLSEAGYSDVAKAYILYRKQREKIRNVNSA 100


>gi|221195724|ref|ZP_03568778.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
 gi|221184490|gb|EEE16883.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
          Length = 740

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD  KI  AI KA   V G        ++    N+T++ +        
Sbjct: 1   MKIIKRNGSEVTFDVDKIENAIAKANAEVNGDERLTDREIRFAALNVTDECMEA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               V +E++QD VE  LM   H ++ R+Y++YR  ++  R   +       +  
Sbjct: 55  -GHTVTVEEVQDLVEDQLMALDHFEVARKYIIYRYVQNQRRQKNTTDDKILSLIE 108


>gi|266625324|ref|ZP_06118259.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862777|gb|EFC95075.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 787

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F  +KI+ AI KAF A +           + I  L    VT   Q     
Sbjct: 4   VLKRDGEVAEFSLNKITEAIKKAFKATKKDY-------NNEILELLSLRVTADFQEKMRD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
             + +E IQD VE  L Q+G+  + + Y+LYR++R  +R  ++ 
Sbjct: 57  GQITVEQIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMKNT 100


>gi|224367600|ref|YP_002601763.1| anaerobic ribonucleoside triphosphate reductase [Desulfobacterium
           autotrophicum HRM2]
 gi|223690316|gb|ACN13599.1| NrdD [Desulfobacterium autotrophicum HRM2]
          Length = 696

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  FD SKI  AI KA  A            +   K LT + +T L ++ +  
Sbjct: 5   INKRDGRVAQFDSSKIVDAIAKAGKATGEFD-------EREAKKLTLKVIT-LARNLRLG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E+IQD VE  L+ S  +K  + Y++YRE+R+ +R                 + + 
Sbjct: 57  KCPEVEEIQDIVERILLDSPFYKTAKAYIIYREQRNQIRRITIEE----------NVGLM 106

Query: 151 DGTLISFNSK-RLEMIVEEACSGLQDVSSKIVLSE 184
           D  +   + K +    +  +  GL +  S  + SE
Sbjct: 107 DSYIQRMDWKVKENSNMSYSLQGLNNFISSDITSE 141


>gi|241761764|ref|ZP_04759850.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283856392|ref|YP_162760.2| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373678|gb|EER63238.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283775391|gb|AAV89649.2| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 672

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA  A      + + R+    + +          H  + 
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKAGAASGEFDHAEAARLAKQAQKVIL--------HRFAD 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q  
Sbjct: 64  HAPEIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQET 107


>gi|52549681|gb|AAU83530.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos30H9]
          Length = 748

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA  A     +       +I + LT + +  L Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKAGAATGEFDS-------EIAQKLTLKVLN-LAQQAIP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D       K+  
Sbjct: 56  RDIPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSKANVDLVDQYLEKIDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            +++ + +SF+ + L   V 
Sbjct: 116 QVNENSNMSFSLQGLNNYVS 135


>gi|260752524|ref|YP_003225417.1| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258551887|gb|ACV74833.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 672

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA  A      + + R+    + +          H  + 
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKAGAASGEFDHAEAARLAKQAQKVIL--------HRFAD 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q  
Sbjct: 64  HAPEIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQET 107


>gi|307297317|ref|ZP_07577123.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916577|gb|EFN46959.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 717

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG +  FD  KI  A+ KAF A E      +   +DI++ +  + V    Q   
Sbjct: 2   LNVRKRNGAIVGFDLDKIINAMKKAFDATE------THYNEDILERVALRVVADF-QPKA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +  ++ IEDIQD VE +L   G   + + Y+LYR  R  +R 
Sbjct: 55  TDNLIDIEDIQDSVERTLESLGFTDVAKSYILYRRHREKLRE 96


>gi|115525180|ref|YP_782091.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
 gi|115519127|gb|ABJ07111.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
          Length = 673

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
                +VIKR+G    FD  KI  AI +A  A        +        +L      +++
Sbjct: 7   ATPPRRVIKRSGEQAPFDSGKIHSAIERAGKATAEFDRPEA--------DLLAIQAIKVI 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            H       HIE IQD VE  L+ + H    R +++YRE+R+ +R  +     
Sbjct: 59  SHRFIDQAPHIEQIQDVVEQVLISANHFATARAFIVYREQRARLRRDRKTVVD 111


>gi|295102055|emb|CBK99600.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii L2-6]
          Length = 723

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V GK      ++ DI   +T+Q          
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGKARLSREQITDIAAAVTDQCQA------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E++QD VE  LM    H I R Y+ YR  +S  R   +  +
Sbjct: 54  LNRAVSVEEVQDMVENQLMDIKAHDIARHYITYRYIQSLKRQTNTTDE 101


>gi|331085611|ref|ZP_08334695.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330407498|gb|EGG87000.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 761

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V  +D SKI+ AI+KA  A     A+ +  V + +++         L+     
Sbjct: 5   IIKRDGRVVLYDESKIASAILKAMEAAGEGDATDAANVANDVQS--------KLEKLPED 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   IE +QD VE +LM+ G  +  ++++LYR +R+ +R A +           +     
Sbjct: 57  MPPQIEQVQDTVERALMKKGFEESAKKFILYRAQRTHIREANTSLMKTIDEITNIDARES 116

Query: 151 D 151
           D
Sbjct: 117 D 117


>gi|289571254|ref|ZP_06451481.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis T17]
 gi|289545008|gb|EFD48656.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis T17]
          Length = 212

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 8/168 (4%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-N 310
            E     I E    R + +     + V    D  Y + F F  +LG    Y  Y L   +
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSR-NFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFD 97

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQL 368
           G R  E  +   + VA+ LA  +T     A    + +    F  +TPT  NSG  +  + 
Sbjct: 98  GKRYLERFEDRVVMVALTLAAGDT---ALAELLVDEIIDGRFQPATPTFLNSGKKQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            SCFL  V D++  I  ++     L+K  GG+    T +R  GA I  
Sbjct: 155 VSCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIRH 202


>gi|315104645|gb|EFT76621.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA2]
          Length = 780

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH    + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDDAAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|224541069|ref|ZP_03681608.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525993|gb|EEF95098.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
          Length = 788

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G +T FD  KI+RAI KAF++++ +           + ++    VT   +   
Sbjct: 2   YQVIKRDGKITEFDLKKITRAIEKAFISLKKEYHPS-------VIDMLALKVTSDFEKKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L Q+G+  + + Y+LYR++R  VR  +S 
Sbjct: 55  KDHKIAVEDIQDSVEDILSQAGYSDVAKSYILYRKQREKVRNMKST 100



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETA 201
           +++  DG +  F+ K++   +E+A   L+      V+     +   +    + +  +   
Sbjct: 3   QVIKRDGKITEFDLKKITRAIEKAFISLKKEYHPSVIDMLALKVTSDFEKKIKDHKIAVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
            I  S   I  +  Y+ V   ++L   R++
Sbjct: 63  DIQDSVEDILSQAGYSDVAKSYILY--RKQ 90


>gi|327335299|gb|EGE77009.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL097PA1]
          Length = 780

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELH------ASEV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEMG--EETPDVETIQDLVEKTLMDQGHDGVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
                          D    + N      +      G +
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYGTE 157


>gi|295106152|emb|CBL03695.1| anaerobic ribonucleoside-triphosphate reductase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 813

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G +  FD +KIS AI KAF A+  +    +I       +L    VT   +   
Sbjct: 2   YEVQKRDGKIAEFDIAKISSAIAKAFDALGKQYHPSTI-------DLLALNVTAHFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A
Sbjct: 55  EDGIITVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNA 97


>gi|257440198|ref|ZP_05615953.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197232|gb|EEU95516.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 723

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V  K +    ++  I  ++TEQ          
Sbjct: 1   MKIIKRNGSEVPFDITKIITAVTKASDSVSRKSSLTQEQILSIANDVTEQCQA------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  LM    H + R Y+ YR  +S  R   +  +
Sbjct: 54  LNRAVSVEEIQDMVENKLMDIQAHDVARHYITYRYVQSLKRQTNTTDE 101


>gi|255283025|ref|ZP_05347580.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255266327|gb|EET59532.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 771

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG   +FD +KI  AI KA  A          +V+ I     E+ V  ++      
Sbjct: 12  IKKRNGRPVTFDRTKIENAIRKANDA---------AKVEAIAPCQFEKLVDEVIAFIPEG 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE  L+ +G  K  + Y+LYR E + VR  ++           +     
Sbjct: 63  EVPDVEQVQDLVEERLIANGFAKTAKAYILYRAEHTKVRKTEADLVQIYRELTFVSAADA 122

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 123 DMKRENANID 132


>gi|295102976|emb|CBL00520.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 723

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q         +
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGQARLSREQITQIAAAVTDQ-------CQQ 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E++QD VE  LM    H + R Y+ YR  +S  R   +  +
Sbjct: 54  LNRAVSVEEVQDLVENQLMDIQAHDVARHYITYRYVQSLKRQTNTTDE 101


>gi|160943676|ref|ZP_02090908.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445131|gb|EDP22134.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
          Length = 723

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q         +
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGQARLSREQITQIAAAVTDQ-------CQQ 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E++QD VE  LM    H + R Y+ YR  +S  R   +  +
Sbjct: 54  LNRAVSVEEVQDLVENQLMDIQAHDVARHYITYRYVQSLKRQTNTTDE 101


>gi|74318189|ref|YP_315929.1| anaerobic ribonucleoside triphosphate reductase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057684|gb|AAZ98124.1| ribonucleotide reductase [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    FD  KI  A+++A  A    G        D    LT Q V ++L H+  
Sbjct: 16  EVLKRDGRRAPFDAGKIRSALLRAGQASGEFGG-------DEADLLTAQVV-KVLAHSFR 67

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                IE IQD VE SL+ S H +  R Y+ YRE    +R  +     
Sbjct: 68  NTPPDIERIQDVVEQSLIASNHFQTARAYIAYRESHKKLREDRKTVVD 115


>gi|239616932|ref|YP_002940254.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505763|gb|ACR79250.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 717

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 7/107 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+ SKI  A+ KAF A +      +    DI++ L  + VT   Q     
Sbjct: 4   VRKRDGSLVEFELSKIILAVKKAFEATD------TAYTDDILERLALR-VTSDFQGKIKE 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            IV IEDIQD VE +L   G +K+ + Y+LYR++R  +R  +S    
Sbjct: 57  NIVDIEDIQDSVEKTLEDLGFNKVAKAYILYRKQREKLRNLKSSMLD 103


>gi|312144556|ref|YP_003996002.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
 gi|311905207|gb|ADQ15648.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
          Length = 1076

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG    F+  KI  A++KA  AVE            I   +  + ++ L    K  
Sbjct: 6   VKKRNGKKVDFNSDKIKAAVIKAAEAVESNN-------DKIGDEICSEVISYLKIFFKDG 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            IV +E IQD VE  L++ G+  + + Y+LYRE+ S +R  +        I  
Sbjct: 59  GIVEVEQIQDLVEKVLIEKGYADVAKAYILYREQHSKLRDTKKLFADAVNIMD 111


>gi|163816122|ref|ZP_02207490.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
 gi|158448542|gb|EDP25537.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E  K V VIKRNG   +FD SKI  AI+ A   V+        +V  I  NL +Q  +  
Sbjct: 4   EAKKHVHVIKRNGEEVTFDLSKIENAILAANNEVDNLHQLNEYQVHAIADNLEKQIESM- 62

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +       +  
Sbjct: 63  ------SHAVHVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELARKSNTTDNGILALID 116

Query: 144 KLK 146
            + 
Sbjct: 117 HMN 119


>gi|291547169|emb|CBL20277.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           SR1/5]
          Length = 790

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F   KI+ AI KAF A     +S  I       +L    VT   Q+  
Sbjct: 2   FQVVKRDGELDEFKMGKITAAIDKAFDAKGKNYSSDMI-------DLLGLRVTADFQNKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               + +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S 
Sbjct: 55  ENNRISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKST 100


>gi|305682409|dbj|BAJ16292.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 103/242 (42%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQTNEHFIPDVIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSSAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKAWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  +     
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIHE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|313113153|ref|ZP_07798780.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624547|gb|EFQ07875.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 723

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q          
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVSGQSRLTKDQITQIAAAVTDQCQA------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E++QD VE  LM    H + R Y+ YR  +S  R   +  +
Sbjct: 54  LNRAVSVEEVQDMVENQLMDIKAHDVARHYITYRYVQSLKRQTNTTDE 101


>gi|186688097|gb|ACC86126.1| anaerobic ribonucleoside-triphosphate reductase [uncultured
           bacterium]
          Length = 322

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + +F   KISRAI  A   V G   + +  + D + N     +         
Sbjct: 4   QIKKRDGRIVNFSKEKISRAIFMAAREVGGSDFAMADSIADKVINYMATVL-------PP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             I  +E +QD VE  L++ GH K  + Y+LYR +R+  R A++    
Sbjct: 57  DEIPTVEFVQDCVEKVLIEDGHAKTAKAYILYRAKRTRYREAKTELMD 104


>gi|218281041|ref|ZP_03487617.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
 gi|218217690|gb|EEC91228.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
          Length = 652

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FDPSKI  AI KAF ++        +   D I NL     T   Q   
Sbjct: 2   IEVEKRDGSIVDFDPSKIFSAISKAFDSLH-------MEKDDAIINLLVLRATADFQAKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +E IQD VE +L +SG++ + + Y+LYR++R +VR  QS +  
Sbjct: 55  KENRISVEMIQDSVEKTLSESGYYPVAKTYILYRKQRENVRKIQSTANE 103



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL----QDVSSKIVLSETYKNMYDGLSESDLET 200
           +++   DG+++ F+  ++   + +A   L     D    +++     +    + E+ +  
Sbjct: 2   IEVEKRDGSIVDFDPSKIFSAISKAFDSLHMEKDDAIINLLVLRATADFQAKIKENRISV 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +I  S      E  Y  V   ++L + +RE +  +     +  H     L+   
Sbjct: 62  EMIQDSVEKTLSESGYYPVAKTYILYRKQRENVRKIQSTANEYIHLVNSYLHNNV 116


>gi|261416546|ref|YP_003250229.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373002|gb|ACX75747.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 776

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR--------VQDIIKNLTEQTVTR 82
           V KR+G    F+  KI+ A++KAF A                     D++ N+  +    
Sbjct: 5   VKKRDGREMPFNIEKIADAVIKAFRASGELDEQIKASQAQMNLLGSDDLLTNVALKVAAE 64

Query: 83  LLQHNKSALI--VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            + H ++       IE+IQD VE +L + G+    + Y+LYR ER+ VR   +       
Sbjct: 65  AVGHLEAENKTKPDIEEIQDAVEKALTEGGYADTAKSYILYRAERTRVREVNTRLMQTLH 124

Query: 141 IAPKLKIMMDDGTLISFNSK 160
                     D    + N  
Sbjct: 125 DITFSSAKESDLKRENANID 144


>gi|158319503|ref|YP_001512010.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
 gi|158139702|gb|ABW18014.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
          Length = 784

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG +  F+PSKI+ AI KA    +           ++   +TE+   ++  + K
Sbjct: 2   IQVMKRNGRLVEFNPSKITNAIKKAMAETKLGVD------HNLSVKITEEIKEKIQNNAK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +H+E+IQD VE  LM S    + + Y++YR ER+ +RA Q  S         +   
Sbjct: 56  ---PIHVEEIQDIVEMLLMSSDRKDVAKRYIIYRNERAKIRANQKSSDEKLLTDEFISQY 112

Query: 149 MD 150
             
Sbjct: 113 KH 114



 Score = 45.1 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 105/315 (33%), Gaps = 51/315 (16%)

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSG-----GLGNDWTPVRGLGAHIHGTNGKSQG 423
           ++    TV D   G   +L     L   +       +  D+  VR  GA +    G + G
Sbjct: 272 NNSVKITVGDSKEGWIQSLDFFFKLLYSNEYRNIKTIIVDYDHVRPKGAKLKSFGGTASG 331

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
                 +       +    K  G+    L                          ++ AN
Sbjct: 332 HESLKNMFYKIDKVIKNSRKVNGSGKIKLRP---------------------IDCLDIAN 370

Query: 484 WIPDLFMKR-VTQNAGWTLFSPDEV------SDLHDLYGKEFEIAYENYERQADRGEIKV 536
            I +  +   V + A   L   D+       S+L+     ++ +      RQ     I  
Sbjct: 371 IIGENVVVGGVRRTAEMILIDADDKECVEAKSNLYKQIDGQWIVDQNIIHRQMSNNSIYY 430

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
             K S   L  ++  M + +G P     +    R P  +       N C EI L+S    
Sbjct: 431 TEKPSREKLHWQIQQMRY-SGEPGWINAEAAAKRRPNMN-----GVNPCGEILLDSQ--- 481

Query: 597 TAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRV---LDNVIDINCHTIEKAKKSNHT 652
             +CNL +IN++A    +   D + +    + +VR    +  V ++     +K ++ +  
Sbjct: 482 -GLCNLTTINVMAFVKEDGTLDLEGIIEAQKLSVRAGYRMTCV-ELELPHWDKVQQRDKL 539

Query: 653 HRAIGLGLMGFQSAL 667
              +G  L G+Q  +
Sbjct: 540 ---VGCSLTGWQDLV 551


>gi|310829195|ref|YP_003961552.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
 gi|308740929|gb|ADO38589.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
          Length = 774

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKRNG V  FD  KIS AI KA ++V G         +  I+ LT    +      + 
Sbjct: 4   NIIKRNGTVAPFDTRKISSAIYKANISVNG-----ESMTEKHIEFLTNVVTSA----AEP 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
            +   +E IQD VE +L+++ + K  + Y+LYR E +  R A+S                
Sbjct: 55  LVCPTVEQIQDIVEETLIKADYAKTAKAYILYRAEHAKTRQAESDLMEIYKDLTFRYAED 114

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 115 ADLKRENANID 125


>gi|305682407|dbj|BAJ16291.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 104/242 (42%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQSNEHFIPDIIRFLDNVLEDFINN 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|325290819|ref|YP_004267000.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966220|gb|ADY56999.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 707

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI +A+ KA  A       +  R+      +T++ V  L ++  
Sbjct: 1   MYVVKRDGRKEIFNSGKIQQAVEKALTATGADNVDQWSRI------ITDRVVADLNENFS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           S   + IE IQD+VE  LM++G+ K+ R Y+ YR +   +R  +   + +  +   
Sbjct: 55  SGDGITIEYIQDKVEDILMRTGNTKVARSYIRYRFQHEIIRNQEKAKEENNKLFSD 110


>gi|282855510|ref|ZP_06264829.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
 gi|282586653|gb|EFB91902.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
          Length = 794

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  F+  +I+RAI  A  AV  K  + +     I + LT Q V RL     ++
Sbjct: 5   IKKRDGRLAPFNEDRITRAIFLAASAVAEKEGTAADYR--IAEGLTSQVVRRL-NEKYAS 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +ED+QD V   L+++GH + +  Y+ YR ER+ VR + +                 
Sbjct: 62  GSPSVEDVQDMVVKVLIENGHARTSEAYITYRNERTRVRDSHTRLMKAIEEITFADAKTA 121

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 122 DVKRENANIN 131


>gi|210615495|ref|ZP_03290622.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
 gi|210150344|gb|EEA81353.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
          Length = 788

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +T F   KI  AI KAF A E           DII  L  + VT   +   
Sbjct: 2   YQVTKRDGKITDFHLKKIVAAITKAFEAQEKAIHP------DIIDMLALK-VTADFEPKI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
              ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S 
Sbjct: 55  QENLIRVEDIQDSVESVLIQSGYGDVAKGYILYRKQREKIRNMKST 100


>gi|305682413|dbj|BAJ16294.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 104/242 (42%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   LK + L +
Sbjct: 140 RFSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLKSKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|212702235|ref|ZP_03310363.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
 gi|212674361|gb|EEB34844.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD  KI  AI KA  A     +   +        +TE+   +L   N   
Sbjct: 10  IIKRDGTEVAFDSVKILNAITKANKASGEDMSPTDLL------FVTEKVCRKLEAQNLR- 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
              H+E+IQD VE +L+Q  + K  + Y+LYR E +  R A+S+             + +
Sbjct: 63  ---HVEEIQDVVEETLIQYDYAKTAKAYILYRAEHTKRRNAESYLMEIYKTLTYAPAIEE 119

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 120 DIKRENANID 129


>gi|95930914|ref|ZP_01313644.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133040|gb|EAT14709.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 674

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           A+     +   +V+KR+G    FD  +I  AI +A         S +         L  Q
Sbjct: 7   AHQLASVVLPAKVVKRDGTSVPFDSERIRFAIARAGKVTGEFDESEAA--------LLTQ 58

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              ++L+H        +E IQD VE +L+ + H    R YV+YRE+   +R  Q      
Sbjct: 59  QTLKVLRHRFPFQAPKVEQIQDVVEQTLISANHFATLRAYVVYREQHQKLRQDQKTVVDV 118

Query: 139 AP 140
           A 
Sbjct: 119 AS 120


>gi|109392503|ref|YP_655632.1| gp53 [Mycobacterium phage Che12]
 gi|91980653|gb|ABE67372.1| gp53 [Mycobacterium phage Che12]
          Length = 672

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 101/556 (18%), Positives = 173/556 (31%), Gaps = 156/556 (28%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLG----NDWTPVRGLGAHIHGTNGKSQGVIPF--- 427
            + D   G   A+ +          +      D + +R  GA +    G + G +PF   
Sbjct: 169 PIEDSREGWAAAMVDLIDTHYRYDTVHFQRVYDVSRIRPQGAKLKTFGGVASGPLPFAQM 228

Query: 428 ---------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
                                + V +  A  V  GG R+ A  + +      + EF++ +
Sbjct: 229 LQKVSEVLSDRAGEVLTGLDAMAVDHAIAQCVVAGGVRRSARMSMMHWADPQITEFINCK 288

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
             +GD        N +  + D F + V         SP E                    
Sbjct: 289 SESGDH----WTTNISVEVDDQFWREVK--------SPSES------------------- 317

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSN 583
                         +A  +   +       G P +         S   +VG    V  +N
Sbjct: 318 --------------TAHDVMDALSKGAVRNGEPGMW-------DSSLSNVGEPNRVVCTN 356

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C EITL         CNLG INL A    + + DY  L    R   R L   I      
Sbjct: 357 PCGEITLEPWEP----CNLGHINLAAFVTPSGKTDYIDLIRAHRLMTRFL---IRATFSP 409

Query: 643 I--EKAKKSNHTHRAIGLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASV 699
           +   K+++    +R IG+G +G  S L L    Y  +P      +   E      ++A V
Sbjct: 410 VADPKSREVLDRNRRIGVGHLGVASYLALTGRRYSEAPGDKRFTNFLRE------MAAEV 463

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+ ++                 I +  + R                          
Sbjct: 464 DLAAEQFSHEL--------------RIPVPVKKR-------------------------- 483

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
                 IAPT T+A + GVS+ I P +   +++     + + +    + +L       E 
Sbjct: 484 -----TIAPTGTVAKMPGVSEGIHPIFSKYFIRRIRFNENSDMAE--LRKLANEGYEIEK 536

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIH--------ATAFEIDPMWLIESASRRQ-KWIDQA 870
            +        SI   + +   +  +H          A ++    L+   +  Q  W D A
Sbjct: 537 DLFAPNTEVVSIPTKDTLVQAVVDLHGRDAEEIVEAANDLTLHQLLAFQALYQTCWADNA 596

Query: 871 QSLNLYLDEPSGKKLD 886
            S    +D  + + +D
Sbjct: 597 VSFTANVDPDAYEAVD 612


>gi|308271161|emb|CBX27770.1| hypothetical protein N47_C18280 [uncultured Desulfobacterium sp.]
          Length = 758

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+  +  FD SKI+ A+ KA  A +      + ++   +  L  +         + 
Sbjct: 30  KIKKRDNRIVEFDSSKITAALTKAGRATDEFDERDARKLTLRVLTLAHEI--------RL 81

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E IQD VE  L+ S  +K  + Y++YRE+ + +R+  +++  D
Sbjct: 82  GPIPDVEGIQDIVERVLLDSSFYKTAKAYIIYREQHAQIRSIATNANID 130


>gi|315185589|gb|EFU19358.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           thermophila DSM 6578]
          Length = 689

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  +D S+I+RAI+KA  +V G+   +   + + + +L E+ +  L++     
Sbjct: 16  VVKRDGQIEFYDRSRITRAILKAIESVRGE---KDKSLAEHLTDLVEEKIRALMRDRHPN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               IE+IQD VE  L++     + + Y+LYR + S +R  +      + I  
Sbjct: 73  SAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMRDTRKLMLDISAIMD 125


>gi|189424838|ref|YP_001952015.1| anaerobic ribonucleoside triphosphate reductase [Geobacter lovleyi
           SZ]
 gi|189421097|gb|ACD95495.1| anaerobic ribonucleoside-triphosphate reductase [Geobacter lovleyi
           SZ]
          Length = 669

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P LA PF        V+KR+G    F+ S+I  AI +A  A    G        D    +
Sbjct: 4   PVLAAPF-------FVLKRDGTRAPFEASRIQSAIQRAGTATAEFG-------DDEAMLI 49

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           T Q + ++L+H        IE IQD VE +L+ + H    R Y +YRE+RS +R  +   
Sbjct: 50  TSQVL-KVLRHRFPQEPPTIEQIQDVVEQALISANHFATLRAYAVYREQRSRLRQDRKTV 108

Query: 136 KS 137
             
Sbjct: 109 VD 110


>gi|76665047|emb|CAJ17966.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 230

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 11/231 (4%)

Query: 217 AKVTARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
             +  +  ++ L +  E L +      K        L  +       E  +   L +   
Sbjct: 4   QIIDEKGNIKDLDKDQEALISFLSNEVKPKLKRFDTLKEKLNFLQTNEYYETTFLSK--Y 61

Query: 275 DFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALK 331
           + D +     + Y++ F F  ++G    Y  Y L     +  +E  +      A+  A  
Sbjct: 62  NDDQIKTIYQIAYQKKFRFSTFMGAFKFYHDYALKTRDKKFYLETYKDRLSVNALYHAQG 121

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQEN 390
             E  K  ++    L +  F  +TPTL N+G +H  +  SCFL    D L  I    + +
Sbjct: 122 NFEIAKGLIKS---LINQDFTPATPTLLNTGKKHRGEFVSCFLLEASDSLNDIARINEFS 178

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L+K  GG+  + T +R  G  I G  G  +GV+   K+ + +    +Q 
Sbjct: 179 TQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQM 229


>gi|305682415|dbj|BAJ16295.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|305682401|dbj|BAJ16288.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|295106642|emb|CBL04185.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 783

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F+  KI+ A+ +AF A        +++ +   +++  + V +L +     
Sbjct: 5   IIKRDGRTAEFNEGKIAEAVERAFQACG------AMQDRTAAEDIARKVVEKL-ESGAIE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 58  GVPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRARDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 118 DMKRENANIDADTAMGTMLKYG 139


>gi|316934448|ref|YP_004109430.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
 gi|315602162|gb|ADU44697.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
          Length = 673

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD +KI  AI +A  A    G   +         LT Q+V +++ H  + 
Sbjct: 13  IIKRSGAEAAFDSTKIRSAIARAGQATGAFGELEAG-------LLTSQSV-KVIAHRFAG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  IE +QD VE  L+ + H    R Y++YRE+RS  R+ + 
Sbjct: 65  AVPQIEQVQDIVEQVLISANHLTTARAYIVYREKRSQARSDRK 107


>gi|170696403|ref|ZP_02887531.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
 gi|170138664|gb|EDT06864.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
          Length = 430

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 39/236 (16%)

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           +EL +ERGA++ F  + + +                  A    SRLP +++K+ ++  G+
Sbjct: 1   MELTKERGAFALFDTASYLK------------------AGTFASRLP-EDIKEAIRRDGI 41

Query: 759 RNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RNS+ ++ APT T++       S  I+P++   Y +  +  D     SF V +   R L+
Sbjct: 42  RNSHLLSNAPTGTVSLAFADNASNGIEPAFSWTYTRMKVMADGGR-ESFDVEDYAYR-LY 99

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E             G++ R+PD       +A E+     ++  +  Q ++D + S  + 
Sbjct: 100 REL-----------GGDVTRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVN 144

Query: 877 LDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +      +  + +Y  AW  GLK     R         S          A    DP
Sbjct: 145 VPADYPFEAFESLYFDAWKSGLKGLATYRPNETLGAVLSVSPAQADDTLAESDLDP 200


>gi|325833573|ref|ZP_08166022.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|325485497|gb|EGC87966.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 805

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 24  EKIKGV--QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           E+I  +   ++KR+G    F   KI+ A+ +AF A        +++ +   +++ ++ V 
Sbjct: 26  ERIGSMVETIMKRDGRTVEFKQEKIAEAVERAFQACG------AMQDRAAAEDIAQRVVD 79

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           +L +         +E +QD VE +L++SG  +  + Y+LYR ERS  R   S        
Sbjct: 80  KL-ESGAIEGAPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKD 138

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
               K    D    + N      +      G
Sbjct: 139 ITFSKASDSDMKRENANIDADTAMGTMLKYG 169


>gi|305682403|dbj|BAJ16289.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFGLWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSSAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|145641095|ref|ZP_01796676.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274256|gb|EDK14121.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 108

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTV 236
            +I ++  LI K+ P+Y  + AR  +  LR++     
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYGHF 97


>gi|31745026|dbj|BAC77641.1| probable anaerobic reductase [Porphyromonas gingivalis]
          Length = 794

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-------FARQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  ++  K        ++  
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 149 MDD 151
             +
Sbjct: 116 DVN 118


>gi|167759292|ref|ZP_02431419.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
 gi|167663166|gb|EDS07296.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
          Length = 784

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G V  F  SKI  AI KAF A E +        QDII  L  + VT   +      
Sbjct: 1   MKRDGQVAEFTLSKIGVAIEKAFKAQEKEYN------QDIIDLLALK-VTADFEPKIKDS 53

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           ++++EDIQD VE  L+++G+  + + Y+LYR++R  +R   S       I      + D
Sbjct: 54  LINVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNSTMLDYKEIVDSYVKITD 112


>gi|189500136|ref|YP_001959606.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
 gi|189495577|gb|ACE04125.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
          Length = 730

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V SF+  KI+ A+ +A  A            +     L+ Q V  L +  ++
Sbjct: 12  KIIKRDGKVVSFNREKITFALFRALRATGNPD-------RQYAAELSAQVVASL-EAKRA 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E+IQD VE  L ++      + Y++YR +  ++R A+    +   +   L +  
Sbjct: 64  KEPPSVEEIQDVVEKVLFENCAFDAAKAYIIYRFQHGNMREAKEIFANIDLVDDYLHLKD 123


>gi|320527019|ref|ZP_08028208.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320132604|gb|EFW25145.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 734

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   +FD SKI  AI KA  A +    + +     +I+++TE+  ++     +
Sbjct: 1   MNVIKRSGEELAFDVSKIENAITKANNATDLSHRTTA----KVIRDITERVSSKCKSLKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           S   V +E+IQD VE  LM++   ++   Y+ YR ER+ VR A +  +    +  +
Sbjct: 57  S---VSVEEIQDMVENELMKAQVFQVAHNYITYRYERALVRKANTTDQKILSLLER 109


>gi|305682411|dbj|BAJ16293.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 47/238 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   IR    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIRFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           R S   A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L
Sbjct: 140 RFSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGL 197


>gi|52549915|gb|AAU83764.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos33H6]
          Length = 748

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA  AV G+  S      +I + LT + +  L Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKAG-AVTGEFDS------EIAQKLTLKVLN-LAQQAIP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D       K+  
Sbjct: 56  RDIPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVDLVDQYLEKIDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            +++ + +SF+ + L   V 
Sbjct: 116 QVNENSNMSFSLQGLNNYVS 135


>gi|225018290|ref|ZP_03707482.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
 gi|224948927|gb|EEG30136.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
          Length = 775

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++IKR+G   +F+  K+++AI +A  +V     SR+  +           V   +    
Sbjct: 3   TKIIKRDGREAAFNIDKVTQAIFRAGQSVGDLDYSRANEI--------AGNVYARINEQM 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E +QD VE  L+  G  +I + Y+LYR ER+ VR   +              M
Sbjct: 55  EDSVPTVEQVQDFVEKELIAEGLSEIAKHYILYRAERTRVREMNTKLMKIYEDLTFKSAM 114

Query: 149 MDDGTLISFNSK 160
            DD    + N  
Sbjct: 115 EDDNKRENANID 126


>gi|218961544|ref|YP_001741319.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730201|emb|CAO81113.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 710

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 13/166 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG +  F   KI++AI  A +A    G   +  +   + NL +Q +          
Sbjct: 7   IRKRNGSIVPFKQQKIAKAIESAGLATGEFGKDIAGVLTLRVLNLAQQVI--------QD 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKIM 148
            I  +E IQD VE  L+ S + K  + Y++YR++ S +R   +++  +       KL   
Sbjct: 59  EIPEVEKIQDIVEEVLLASPYKKTAKAYIIYRDQHSRIRELVSKAGVELIDQYLEKLDWQ 118

Query: 149 MDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYD 191
           +++ + ++++ + L   +         L  +    +        + 
Sbjct: 119 VNENSNMAYSLQGLNNYIASEVSKTYWLNKIYPPEIREAHLSGDFH 164


>gi|166032728|ref|ZP_02235557.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
 gi|166027085|gb|EDR45842.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
          Length = 729

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +VIKRNG    FD  KI  AI  A   V+        +V+ I  ++  Q         K
Sbjct: 7   TKVIKRNGEEVGFDLEKIENAIRAANEEVDNIYKLNEFQVRAIADDIAGQV-------KK 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           S   +H+EDIQD VE  +M    +++ ++YV YR +R   R + +       +   + 
Sbjct: 60  STHAIHVEDIQDMVETGIMGMRGYEVAQKYVRYRYKRELARKSNTTDNGILALIDNIN 117


>gi|188995260|ref|YP_001929512.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594940|dbj|BAG33915.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 798

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-------FARQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  ++  K        ++  
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 149 MDD 151
             +
Sbjct: 116 DVN 118


>gi|187251462|ref|YP_001875944.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971622|gb|ACC98607.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 746

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            K + + KR+G +  +D  KI+ AI+K+  A   + A+ + R       L  +    L +
Sbjct: 4   TKVLTITKRDGRIVLYDEKKIANAILKSLAATGQEDAAAAAR-------LANEVGNTLAE 56

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             K      IEDIQD+VE +LM +G+ +  + Y+LYR +R+ VR + +    + 
Sbjct: 57  KGKDNYF--IEDIQDEVERALMHNGYEETAKSYILYRAKRTRVRESNTALMQEC 108


>gi|257792307|ref|YP_003182913.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|257476204|gb|ACV56524.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
          Length = 775

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF A        +++ +   +++ ++ V +L +     
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAFQACG------AMQDRAAAEDIAQRVVDKL-ESGAIE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 58  GAPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 118 DMKRENANIDADTAMGTMLKYG 139


>gi|317490230|ref|ZP_07948718.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|316910724|gb|EFV32345.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
          Length = 775

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF A        +++ +   +++ ++ V +L +     
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAFQACG------AMQDRAAAEDIAQRVVDKL-ESGAIE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 58  GAPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 118 DMKRENANIDADTAMGTMLKYG 139


>gi|34540965|ref|NP_905444.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis W83]
 gi|34397280|gb|AAQ66343.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Porphyromonas gingivalis W83]
          Length = 798

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+          +
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-------FARQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  ++  K        ++  
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKN 115

Query: 149 MDD 151
             +
Sbjct: 116 DVN 118


>gi|305682405|dbj|BAJ16290.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 47/242 (19%)

Query: 584 LCTEITLNSSSEET-----AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           LC+EITL +  + T     AVC L S+NL  +F   Q +   +   I+    VL++ I+ 
Sbjct: 1   LCSEITLPTGRDYTNNIRTAVCCLSSLNL-EYFELWQSNEHFIPDIIKFLDNVLEDFINK 59

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +T+  AK S    R+IGLG+MGF S L   +IP AS  A     +  E I     + S
Sbjct: 60  APNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMS 119

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V LA+ERGA                                       D  K  ++    
Sbjct: 120 VVLAKERGAC-------------------------------------IDAQKCNIQE--- 139

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +
Sbjct: 140 RFSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNN 199

Query: 818 EA 819
           + 
Sbjct: 200 DQ 201


>gi|255652452|ref|ZP_05399354.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 741

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  FD +KI  AI K+F+++  KG S +   +++   + ++        NK
Sbjct: 2   LNVIKRDGRIVPFDENKIIDAIEKSFLSLRNKGKSEAFD-RELATLIAKKI------KNK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +HIEDIQD +E SLM S    + +EY+ YRE+R+  R  ++++ 
Sbjct: 55  PCEKMHIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRKTYND 102


>gi|309388471|gb|ADO76351.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium
           praevalens DSM 2228]
          Length = 1033

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG    F  +KI +A+ KA  +V       ++++   +         ++   N++ 
Sbjct: 6   VRKRNGQQVKFKLNKIEKAVNKAAASVGRNEGQIAVKIAAEVLAYL-----KIFFENENN 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +V +E IQD VE  L++ G+ +I + Y+LYRE+ S  R ++        I        D
Sbjct: 61  NLVEVEQIQDLVEKVLIEKGYAEIAKAYILYREQHSKFRNSKKLLADAVNIMDDYLDRSD 120

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                + N          +  GL +  +  V S+ +         ++L  +
Sbjct: 121 WKVNENSNM-------SYSLQGLNNYIASEVTSQYWLQEIYPQKAAELHNS 164


>gi|160914925|ref|ZP_02077139.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
 gi|158433465|gb|EDP11754.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
          Length = 781

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 20/282 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F P KI+RAI  A   V     S  +      + L EQ V  LL +    
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLAASHV--AQDSGEVADYATAERLCEQVVG-LLNNCYQD 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E++QD V   L+++GH K +  Y+LYR ERS +R  ++                 
Sbjct: 62  KVPSVEEVQDMVVKVLIENGHAKTSEAYILYRAERSKIRNMKTRLMKSIGEITFSDSNDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES---DLETALIFSSR 207
           D    + N      +      G   VS +  +S+     +  + E     +      +  
Sbjct: 122 DIKRENANIDGNTAMGTMLQYG-SAVSKEFCMSQLMNPTHAQMHEKGDIHIHDMDFMNMG 180

Query: 208 TLIEKEPNYAKVTARFLLE---KLRRE-------VLTTVYKKPQKATHHEMQCLYPEYFC 257
           TL   + +  K+           LR          L  +  +  +   H  Q +    F 
Sbjct: 181 TLTCCQIDLDKLFENGFSTGHGHLREPKDITSYGALAAIAIQSNQNDQHGGQSI--PAFD 238

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            Y+ +GV      E M + +   L   +  + D    +L ++
Sbjct: 239 FYLAKGVAKSFRKEYMANLNRA-LEIYVDPDMDIKERFLAVE 279


>gi|85859088|ref|YP_461290.1| anaerobic ribonucleoside triphosphate reductase [Syntrophus
           aciditrophicus SB]
 gi|85722179|gb|ABC77122.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophus
           aciditrophicus SB]
          Length = 715

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++ KR+G +  FD  KI+RAI KA  A        + ++   + +L E+          
Sbjct: 21  TEIKKRDGRLVKFDAEKITRAIAKAGDATGEFDYKVARKLTIKVMSLAEKI--------F 72

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            + I+ +E+IQD VE  L+ + + +  + Y++YR++ + +R   +  + D
Sbjct: 73  DSRIISVEEIQDIVEEVLLST-YSRTAKAYIIYRDQHARLREITNRMEVD 121


>gi|300698167|ref|YP_003748828.1| ribonucleotide reductase oxidoreductase protein (nrdD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074891|emb|CBJ54460.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CFBP2957]
          Length = 685

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV+KR+G +  FD  KI RAI  A  A                  +  +   R+L 
Sbjct: 1   MTCTQVMKRDGTLVDFDAEKIRRAIAAAGHATREFDMP-----------MAAELTGRVLW 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           H        IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +
Sbjct: 50  HLADVPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE 108


>gi|241765490|ref|ZP_04763455.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
 gi|241364744|gb|EER59744.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
          Length = 672

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+R+G    FD  +I  A+ +A  A +   A+ +         LT Q V ++L H   
Sbjct: 11  EVIQRSGQRVPFDAERIRAALQRAGKATDEFDAAEAA-------LLTAQVV-KVLIHRFH 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                +E IQD  E +L+ + H    R Y++YRE+ + +RA +  
Sbjct: 63  GEAPTVEQIQDVAEQTLIAANHLATARAYIVYREQHATLRADKQT 107


>gi|330503314|ref|YP_004380183.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
 gi|328917600|gb|AEB58431.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
          Length = 672

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G    F+ +KI RAI  A  A     A  +       K L++  + RL +       
Sbjct: 15  KRDGQEVPFEGAKIERAITAAGQATGEFAAIEA-------KALSDAVLARLTEFR----S 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + +E +QD+VE  LM++G+++  R Y++YRE    +R  + H    A    +
Sbjct: 64  LDVEQVQDRVEQVLMEAGYYQTARAYIVYRERHGRLRRDRKHLIDVAASMNE 115


>gi|255994385|ref|ZP_05427520.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993098|gb|EEU03187.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
          Length = 750

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FD SKIS AI+ A   + G          ++   L  +   RL+    S
Sbjct: 6   KIRKRDGRIVDFDISKISEAILNAAKVLGGNNK-------EMSDKLASEVHDRLIAQFGS 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE  L+ +GH +  +EY+LYR ER+  R                    
Sbjct: 59  TPPP-VESIQDVVEAVLIDNGHARTAKEYILYRAERTKNRDMNMRLMKTYQDLTFKSAKD 117

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 118 NDIKRENANID 128


>gi|210621578|ref|ZP_03292714.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
 gi|210154701|gb|EEA85707.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
          Length = 788

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F+ +KI+RAI  A   V  K          + ++LT++ +  LL+     
Sbjct: 5   IKKRDGRTIPFNENKITRAIFLAASDVAKKEGKAPDF--KMAEDLTQEVIA-LLERRFGE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD V   L+++GH K + EY+LYR ER+ VR +++                 
Sbjct: 62  EVPSVEDVQDAVVKVLIETGHAKTSEEYILYRAERTRVRNSKTRLMKAIEKITFSDAGDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANIDGNTAMGTMLQYG 143


>gi|237734134|ref|ZP_04564615.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229382694|gb|EEO32785.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 772

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G + +F+  KI+ AI KAF A  GK   ++        N+ +   T+L    K 
Sbjct: 9   NIRKRDGRLVAFELDKIAGAIYKAFEASGGKYELKN------AMNIAKTVETKL--EKKK 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           + +  +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S                
Sbjct: 61  SELPTVELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKSRLMKTFEEITFADSKD 120

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 121 SDLKRENANVN 131


>gi|167756187|ref|ZP_02428314.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
 gi|167704179|gb|EDS18758.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
          Length = 772

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G + +F+  KI+ AI KAF A  GK   ++        N+ +   T+L    K 
Sbjct: 9   NIRKRDGRLVAFELDKIAGAIYKAFEASGGKYELKN------AMNIAKTVETKL--EKKK 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           + +  +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S                
Sbjct: 61  SELPTVELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKSRLMKTFEEITFADSKD 120

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 121 SDLKRENANVN 131


>gi|218133064|ref|ZP_03461868.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991937|gb|EEC57941.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
          Length = 708

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    +D +KI  AI +A   V+ K      ++++I+ ++  + V  L     
Sbjct: 1   MKVIKRNGRQVEYDRNKIIVAIQRANDEVDEKEKITEGQIENIVASIENRNVDAL----- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM      + + Y++YR  R+ VR A +  +S
Sbjct: 56  -----KVEDIQDIIEQKLMAERKFILAKTYIIYRYTRALVRKANTTDES 99


>gi|330836811|ref|YP_004411452.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
 gi|329748714|gb|AEC02070.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
          Length = 785

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V  +D +KI+RAI+KA  A     A ++             T +  L+    +
Sbjct: 5   IVKRDGRVVLYDEAKIARAILKAMEAAGTPDAVKAAAAV-------ANTTSAYLEKKFGS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + IE IQD VE  LM SG+  + + Y+LYR ER+  R   S              M  
Sbjct: 58  ESLPIEGIQDAVETQLMHSGYEDVAKRYILYRAERTRRREMNSDLMKMMDELTHEDAMDS 117

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYD 191
           D    + N      +      G +   D  +K +L +  +  Y 
Sbjct: 118 DTKRENANIDGDTAMGTMLKYGSESSKDYYNKYLLEDDIRQAYQ 161


>gi|52548363|gb|AAU82212.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos11H11]
          Length = 746

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA +         + ++   + NL +Q + R       
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKAGVVTGEFDYEIAQKLCLKVLNLAQQAIPR------- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D       K+  
Sbjct: 57  -DIPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVDLVDQYLEKIDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            +++ + +SF+ + L   V 
Sbjct: 116 QVNENSNMSFSLQGLNNYVS 135


>gi|332297833|ref|YP_004439755.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
 gi|332180936|gb|AEE16624.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
          Length = 706

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL---LQH 86
            V+KR+G V  +D SKIS AI KA  AVE +         D  + LT+    RL   +  
Sbjct: 28  HVVKRSGEVEDYDRSKISAAIGKAITAVEKRPDP------DKAEQLTDAVEDRLRLMMAG 81

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                I  IE+IQD VE  L+++    I + Y+LYR     +R  ++          
Sbjct: 82  RHEHSIPAIEEIQDIVETVLIENNAVTIAKAYILYRARHEAIRDTKNLMLDINATMD 138


>gi|330822767|ref|YP_004386070.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
 gi|329308139|gb|AEB82554.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
          Length = 676

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P P       VI+RNG   +FD  +I  AI +A  A    GA       D  + LT Q 
Sbjct: 4   PPAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDFGA-------DEAQLLTAQ- 55

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            T++L H        IE IQD VE +L+ + H +  R Y+ +R+  + +RA +  
Sbjct: 56  ATKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRADRQT 110


>gi|319760862|ref|YP_004124799.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
 gi|317115423|gb|ADU97911.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
          Length = 676

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P P       VI+RNG   +FD  +I  AI +A  A    GA       D  + LT Q 
Sbjct: 4   PPAPVATLPRDVIQRNGERAAFDAERIRSAIARAGSATGDFGA-------DEAQLLTAQ- 55

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            T++L H        IE IQD VE +L+ + H +  R Y+ +R+  + +RA +  
Sbjct: 56  ATKVLIHRFRGEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRADRQT 110


>gi|266625113|ref|ZP_06118048.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862990|gb|EFC95288.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 93

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F   KIS AI KAF A            +DI++ L+ + VT   Q     
Sbjct: 4   VVKRDGEIVEFHLEKISEAIRKAFKATGKFY------TEDIVELLSIR-VTSDFQGKMQG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
             + +EDIQD VE  L +SG+  + + Y+LYR++R  
Sbjct: 57  DRIAVEDIQDSVEKVLEESGYTDVAKAYILYRKQREK 93


>gi|288926570|ref|ZP_06420487.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
 gi|288336647|gb|EFC75016.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
          Length = 190

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
              A  LKY   F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +  
Sbjct: 11  EAFAASLKY---FGGDELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEMARIERKYA 67

Query: 337 K--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
                 E + LL  F ++    +         Q   LS+CF+  +    D    I    +
Sbjct: 68  NPLSEEEIFGLLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++   V Q G R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQDG-RRGAL 186

Query: 449 CAYL 452
              +
Sbjct: 187 MLSV 190


>gi|192291023|ref|YP_001991628.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284772|gb|ACF01153.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
          Length = 673

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F  +KI  AI +A  A    G   +         LT Q+V +++ H  + 
Sbjct: 13  IIKRSGAEAAFASAKIRSAIARAGQATGEFGELEAG-------LLTSQSV-KVIAHRFAG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  IE IQD VE  L+ + H    R Y++YRE+RS  R  + 
Sbjct: 65  AVPQIEQIQDIVEQVLISANHLTTARAYIVYREKRSQARNDRK 107


>gi|307718381|ref|YP_003873913.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
 gi|306532106|gb|ADN01640.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
          Length = 689

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  +D S+I+RA++KA  +V G+   +   + + + +L E+ +  L++     
Sbjct: 16  VVKRDGQIEFYDRSRITRAVLKAIESVRGE---KDKPLAEHLTDLVEEKLRALMRDRHPN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               IE+IQD VE  L++     + + Y+LYR + S +R  +      + I  
Sbjct: 73  SAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMRDTRKLMLDISAIMD 125


>gi|260590774|ref|ZP_05856232.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
 gi|260537260|gb|EEX19877.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
          Length = 713

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KRNG    F   KI  AI+KAF +V                      V+R+L 
Sbjct: 1   MKNFTITKRNGDKVPFSLDKIMNAIVKAFQSVNEPTDIG--------------IVSRILS 46

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + +EDIQ+QVE +LM+ G++K+ + +++YR++ ++ R      K
Sbjct: 47  DLDIHNDIKVEDIQNQVEFALMKEGYYKVAKSFIVYRQQHTEDRETLEKMK 97


>gi|331092351|ref|ZP_08341177.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401375|gb|EGG80961.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 764

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  +D SKI+ A++KA  A     A+ + +V + +    E+            
Sbjct: 8   IKKRDGRIVLYDESKIASAVLKAMEAAGEGDATDAAQVANDVHMELEKL--------PED 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   IE +QD VE  LM++G  +  ++++LYR +R+++R A +           +   + 
Sbjct: 60  MPPQIEQVQDAVERELMKNGFEQSAKKFILYRAKRTNIREANTSLMRTIDEITNVDARLS 119

Query: 151 D 151
           D
Sbjct: 120 D 120


>gi|197302141|ref|ZP_03167201.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
 gi|197298828|gb|EDY33368.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
          Length = 746

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
           Y   E+  G+++IKRNG    FD +KI +A+ KA +  E +  S   +++DI + +    
Sbjct: 19  YLESEETGGMKIIKRNGSEEVFDINKIIKAVKKADINSEERSLSDG-QIEDIAEYVE--- 74

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                + NK    V +E+IQD VE  +M +G  ++ + YV YR +RS VR A +   
Sbjct: 75  ----FKCNKLNRAVSVEEIQDMVENQIMATGAFELAKSYVRYRYKRSLVRKANTTDN 127


>gi|328480219|gb|EGF49143.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 190

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LFSP  V   +       +I  E Y++     +IK ++ I A  L  ++  +  E+G+P
Sbjct: 1   YLFSPYSVERAYGKPFSYVDITKE-YDKMVANPDIKKYK-IKARDLENEISKLQQESGYP 58

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINL 607
           +I   D  N  +     G +  SNLC+EI       +               CNLGS N+
Sbjct: 59  YIINIDTANRAN--PIEGKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNI 116

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                +  F       ++   VR L  V D  N   +   +  NH   +IGLG MG  + 
Sbjct: 117 PNLMHSRDF-----GHSVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTY 171

Query: 667 L 667
           L
Sbjct: 172 L 172


>gi|291562920|emb|CBL41736.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 729

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   SFD  KI  A+ KA  A E    +   ++ DI   +         + NK
Sbjct: 1   MKIIKRNGAEESFDTLKIVNAVQKACNATENAYLAPE-QLTDIADYVE-------YKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  LM  G   I + YV YR +RS VR A +   
Sbjct: 53  LGRAVSVEEIQDMVENQLMAIGAFAIAKNYVRYRYDRSLVRKANTTDN 100


>gi|323143426|ref|ZP_08078111.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
 gi|322416831|gb|EFY07480.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
          Length = 755

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 8/174 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   SF+  KI+ AI KA ++V       + + ++++  LTE+ +  +       
Sbjct: 5   IVKRDGRKVSFNQQKIANAIKKALVSVH-PDDDVTPQDEELVVQLTEEVINAIESEV--T 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E  QD +E  L++       + ++LYR++R++VR   +                 
Sbjct: 62  KVPTVEHTQDLIERILIKHDLADEAKNFILYRQQRTNVRTYNAELTQIYRDLTSKSTDDM 121

Query: 151 DGTLISFNSKR---LEMIVEEACSGLQDVSSKIVL--SETYKNMYDGLSESDLE 199
           D    + N      + +++     G +D   + VL       +    +   DL+
Sbjct: 122 DLKRENANIDANAPMGLMLRFGSEGSKDFVKRYVLKPEHALAHSNGSIHIHDLD 175


>gi|111184259|gb|ABH08179.1| HSPV074c [Horsepox virus]
          Length = 124

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 261 EEGVKARLLHESMMDFD---LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           + G  + ++    MD        L + + YER+F++ Y G + L   Y L IN   +E P
Sbjct: 11  KNGKHSPIISSITMDIVNKYKDKLNSVIIYERNFSYNYFGFKTLEKSYLLKINNKIVEKP 70

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           Q   MRVA+ +     +    A+E YNLLS   F  ++PTLFN+ T   Q+S CF T
Sbjct: 71  QHMLMRVAVKIHQWNID---LAIETYNLLSEKWFTHASPTLFNARTSRHQMSRCFFT 124


>gi|294674062|ref|YP_003574678.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294471904|gb|ADE81293.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 701

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V+                     V+++L
Sbjct: 2   EIKNFTITKRDGSKDLFSLDKIMNAIVKAFESVQEPADLA--------------IVSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            H      + +EDIQ+QVE +LM+ G++K+ + ++LYR+  S+ R         +     
Sbjct: 48  NHLDMHDNITVEDIQNQVEEALMREGYYKVAKSFILYRQLHSEDRETLEKMVFLSEYCES 107

Query: 145 LK 146
           + 
Sbjct: 108 VN 109


>gi|167766281|ref|ZP_02438334.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|317496972|ref|ZP_07955302.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712000|gb|EDS22579.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|291559087|emb|CBL37887.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SSC/2]
 gi|316895984|gb|EFV18136.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 729

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            ++IKRNG   +FD +KI  AI KA   V         ++  I + + +Q          
Sbjct: 7   TKIIKRNGEEVTFDLNKIINAITKANEEVTKIHQMNQYQIMAIAEKVADQVAN------- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           S+  V++EDIQ+ VE  +M+   +++ ++YV YR +R   R + +       +   + 
Sbjct: 60  SSHAVNVEDIQNMVETGIMEMRGYEVAQKYVRYRFKRELRRKSNTTDDGILSLLDNIN 117


>gi|328947069|ref|YP_004364406.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
 gi|328447393|gb|AEB13109.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
          Length = 725

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    +D +KIS AI KA + V      +  +++ I+ ++        ++ + 
Sbjct: 1   MKIIKRSGAEAIYDRNKISTAIRKANVQVRESHRLKESQIESIVDDIE-------IECHN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           S   +++EDIQD VE  +MQ+G +++ + Y+ YR     +R   +  +    +  +
Sbjct: 54  SGHALNVEDIQDLVENGIMQNGAYEVAKLYITYRYRHQLLRKENTTDQQIMSLLEE 109


>gi|154489787|ref|ZP_02030048.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
 gi|154089512|gb|EDN88556.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
          Length = 775

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E          +++++ +T+          K  
Sbjct: 45  VIKRDGRIVGFNEEKIATAIRKAMLHTENGED------RELVRQITDHI------SFKGD 92

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 93  SQMTVEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 148

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 149 DITRENANMN 158


>gi|121592522|ref|YP_984418.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax sp.
           JS42]
 gi|120604602|gb|ABM40342.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax sp.
           JS42]
          Length = 678

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A  A    G       +D  + LT Q  T++L H    
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARAGQATGEFG-------EDEARLLTAQ-ATKVLIHRFHG 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA +  
Sbjct: 67  EAPTIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRADRQT 110


>gi|282881395|ref|ZP_06290073.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304744|gb|EFA96826.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 735

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E              + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTEKGED----------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--SVEDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|282879302|ref|ZP_06288047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
 gi|281298584|gb|EFA91008.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
          Length = 735

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E              + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTEKGED----------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--SVEDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|7532773|emb|CAB87139.1| aerobic ribonucleotide reductase class Ib [Yersinia pestis]
 gi|7532777|emb|CAB87141.1| aerobic ribonucleotide reductase class Ib [Yersinia
           pseudotuberculosis]
          Length = 173

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 22/182 (12%)

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +    N    LFSP ++  ++ +   E  I+ E Y    D   I+  + I A   ++ + 
Sbjct: 1   ELAKNNEEMYLFSPYDIEQVYGVPMSEISIS-EKYREMVDNKRIRKSK-IKAREFFQILA 58

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P++ F+D  N  +     G ++ SNLC+EI   ++  E              
Sbjct: 59  EIQFESGYPYMMFEDTVNRAN--PIKGRINMSNLCSEILQVNAPTEYHEDLTYRRIGKDI 116

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D      +I  A+R L  V ++ N  ++   +K N    AIG
Sbjct: 117 SCNLGSLNIAQ-----VMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIG 171

Query: 658 LG 659
           LG
Sbjct: 172 LG 173


>gi|139437341|ref|ZP_01771501.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
 gi|133776988|gb|EBA40808.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
          Length = 740

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A + VE        +V    +N+ E          K
Sbjct: 1   MKIIKRSGTEVTFDIDKIVNAIRAANLEVEEGSRLTDRQVIYAAQNVAE-------ACEK 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           +   V +E+IQD VE  +M+   +++ R Y++YR  +S  R   +       +  
Sbjct: 54  AGHTVSVEEIQDLVEDEIMRLDCYEVARHYIIYRYVQSLKRQKNTTDDKILSLIE 108


>gi|218264992|ref|ZP_03478616.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221660|gb|EEC94310.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
          Length = 737

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E          +++++ +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIATAIRKAMLHTENGED------RELVRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  TQMTVEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|163857400|ref|YP_001631698.1| anaerobic ribonucleoside triphosphate reductase [Bordetella petrii
           DSM 12804]
 gi|163261128|emb|CAP43430.1| anaerobic ribonucleoside-triphosphate reductase [Bordetella petrii]
          Length = 668

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G V +FD +KI  AI  A  A     A+ +       + L  + V RL  H   
Sbjct: 10  QILKRDGRVVAFDGAKIVHAIAAAGQATGEVDAAAA-------EILGARVVARLAGH--- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            L   IE IQ+ VE +L+++G     R Y++YRE  + +R+ Q           +
Sbjct: 60  -LCPGIETIQNLVEEALVEAGCWHTARAYIVYRERHARLRSLQHTLVDVESSMEE 113


>gi|169349534|ref|ZP_02866472.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
 gi|169293609|gb|EDS75742.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
          Length = 742

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G +  F+  KI+ AI KAF A   K   +         ++ ++    L    K 
Sbjct: 4   NIRKRDGRLVPFELDKIAGAIYKAFQACSSKYELK------TALDIAKKVEKNL--EKKQ 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           + +  +E +QD VE  L++ G  ++ + Y+LYR  R+  R  +S            +   
Sbjct: 56  SALPTVELVQDTVEEVLIEQGFVRVAKAYILYRANRTRERDMRSRLMKTFEEITFSESKN 115

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 116 SDLKRENANVN 126


>gi|255305054|ref|ZP_05349226.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile ATCC 43255]
          Length = 783

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F+  +I+RAI  A  A         +    + + LT++ + + L H  S 
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLA--ATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYSE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                 
Sbjct: 62  SVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANINGNTAMGTMLQYG 143


>gi|255102947|ref|ZP_05331924.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 783

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F+  +I+RAI  A  A         +    + + LT++ + + L H  S 
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLA--ATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYSE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                 
Sbjct: 62  SVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANINGNTAMGTMLQYG 143


>gi|126697679|ref|YP_001086576.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile 630]
 gi|115249116|emb|CAJ66927.1| Anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile]
          Length = 783

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F+  +I+RAI  A  A         +    + + LT++ + + L H  S 
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLA--ATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYSE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                 
Sbjct: 62  SVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANINGNTAMGTMLQYG 143


>gi|320537091|ref|ZP_08037066.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
 gi|320146058|gb|EFW37699.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
          Length = 702

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT---RLLQHN 87
           V+KR+G + +F+ +KI+ AI KA  A      +      +  + LTE+ +      L   
Sbjct: 33  VVKRSGEIQAFNKNKITAAISKAITA------AEWAENPEKAERLTEKVIENLKTFLSGR 86

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            +  I  IE+IQD VE +L+      I + Y+LYR +R  VR AQ           
Sbjct: 87  HANSIPAIEEIQDTVETTLIAENEAPIAKAYILYRAKREAVRNAQKLMLDINETMD 142


>gi|296449099|ref|ZP_06890888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296879490|ref|ZP_06903483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
 gi|296262061|gb|EFH08867.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296429508|gb|EFH15362.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
          Length = 783

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F+  +I+RAI  A  A         +    + + LT++ + + L H  S 
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLA--ATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYSE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                 
Sbjct: 62  SVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANINGNTAMGTMLQYG 143


>gi|254977366|ref|ZP_05273838.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255094694|ref|ZP_05324172.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255316453|ref|ZP_05358036.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|255519109|ref|ZP_05386785.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-97b34]
 gi|255652288|ref|ZP_05399190.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
 gi|260681885|ref|YP_003213170.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CD196]
 gi|260685483|ref|YP_003216616.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile R20291]
 gi|260208048|emb|CBA60257.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile CD196]
 gi|260211499|emb|CBE01646.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile R20291]
          Length = 783

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F+  +I+RAI  A  A         +    + + LT++ + + L H  S 
Sbjct: 5   VKKRDGRVIPFNEDRITRAIFLA--ATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYSE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                 
Sbjct: 62  SVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAEDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANINGNTAMGTMLQYG 143


>gi|295093550|emb|CBK82641.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus sp.
           ART55/1]
          Length = 708

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   ++D SKI  AI KA   VE        ++++I+ ++  +   R+L    
Sbjct: 1   MQVIKRDGRAVTYDRSKIILAIQKANSEVEPCEKISDEKIEEIVGSIEAKNRKRML---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S
Sbjct: 57  ------VEDIQDIIEQGLMADGKFVLAKTYIIYRYSRELIRKANTTDDS 99


>gi|213417043|ref|ZP_03350187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 142

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L
Sbjct: 1   FYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGL 60

Query: 511 HDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           +D +     EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D C
Sbjct: 61  YDAFFADQDEFERLYVKYENDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHC 116

Query: 568 NIRSPQ-QHVGVVHSSNLCTEITLNS 592
           N  SP    V  V  SNLC EI L +
Sbjct: 117 NTHSPFDPVVAPVRQSNLCLEIALPT 142


>gi|281426110|ref|ZP_06257023.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
 gi|281399686|gb|EFB30517.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
          Length = 740

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FMEIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|189462188|ref|ZP_03010973.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
 gi|189431091|gb|EDV00076.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
          Length = 826

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 13/135 (9%)

Query: 4   SKDVNKGDEDAFP-SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           S+D+ +  +  F  + +      +  + +IKR+G   +F PSKI+ AI KAF A      
Sbjct: 11  SEDLPQRAKPTFILTYSLQASMNLTEICIIKRDGKRENFSPSKITNAISKAFNATGIAHQ 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                 +++I  +T++ +     ++     + +E+IQD VE  LM+    ++ ++Y++YR
Sbjct: 71  ------EELIDEITQRVI-----NHFENPTIGVEEIQDLVETELMKV-QPEVAKKYIIYR 118

Query: 123 EERSDVRAAQSHSKS 137
           + R+  R  ++  K 
Sbjct: 119 QWRNTERDRKTQIKH 133


>gi|265763466|ref|ZP_06092034.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|263256074|gb|EEZ27420.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
          Length = 733

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF + + +                 ++V +L+    
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAFDSKQVEYDPA-----------IVKSVDKLISLTY 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + + V +E IQD VE  LMQ G++ I + ++LYRE+R   R
Sbjct: 50  TNVPVSVETIQDYVERVLMQFGYYDIAKTFILYREQRKSTR 90


>gi|224539245|ref|ZP_03679784.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519127|gb|EEF88232.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 131

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 32/159 (20%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN+  +AIAPT++ + I G +   DP  +  +++         V       L  +  W 
Sbjct: 1   MRNAYLLAIAPTSSTSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPS----LSDKTFW- 55

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                     ++  A+  D  W I +A  RQ  IDQAQSLNLY 
Sbjct: 56  --------------------------LYKGAYLTDQQWSIRAAGVRQLHIDQAQSLNLYI 89

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +E + +++  +Y  AW  G+KT YY+RS+S    E  +
Sbjct: 90  TNEFTMRQVLNLYLLAWECGVKTVYYVRSKSLEVEECES 128


>gi|207722416|ref|YP_002252852.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
 gi|206587595|emb|CAQ18177.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
          Length = 685

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV+KR+G +  FD  KI RAI  A  A                  +  +   R+L 
Sbjct: 1   MTCTQVMKRDGTLVDFDAGKIRRAIGAAGHATREFETP-----------MAAELTGRVLW 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           H        IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +
Sbjct: 50  HLADMPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE 108


>gi|83745549|ref|ZP_00942607.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|207738921|ref|YP_002257314.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
 gi|83727626|gb|EAP74746.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|206592292|emb|CAQ59198.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
          Length = 685

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV+KR+G +  FD  KI RAI  A  A                  +  +   R+L 
Sbjct: 1   MTCTQVMKRDGTLVDFDAGKIRRAIGAAGHATREFETP-----------MAAELTGRVLW 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           H        IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +
Sbjct: 50  HLADMPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE 108


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K  Q+IKR+  ++ F+  KI++AI KA ++VE    S +I + + +     +      +
Sbjct: 1   MKITQIIKRDALISLFELDKITKAIQKAMLSVENGNKSDAIAISESVNETLLER-----K 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            ++   I  +E +QD VE  LM S    + + Y+LYR E++ +R   
Sbjct: 56  RSEPDYIPTVEQVQDIVEYKLMDSPFQDVAKAYILYRNEQARIRKRN 102


>gi|299141931|ref|ZP_07035066.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
 gi|298576782|gb|EFI48653.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
          Length = 740

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FMEIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|257456079|ref|ZP_05621282.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
 gi|257446537|gb|EEV21577.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
          Length = 698

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 11  DEDAFPSLAYPFPEKIKGVQ-----VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
           D+  FP       +  +  +     V+KR+G +  F+ +KI  AI KA  AV G   +  
Sbjct: 2   DQAVFPEWTTFLGDTTRETKPVLRSVVKRSGDIEVFNRNKIKIAIQKAIEAVTG---AAD 58

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               D++    E+ +T+L+    +  I  IE+IQD +E  L++     I + ++LYR +R
Sbjct: 59  EEKADVLTAAVEEKLTQLMASRHAHSIPAIEEIQDIIENVLIERNEASIAKAFILYRAKR 118

Query: 126 SDVRAAQSHSKS 137
             VR A+     
Sbjct: 119 EAVRDAERLMID 130


>gi|304382155|ref|ZP_07364666.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
 gi|304336753|gb|EFM02978.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
          Length = 749

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 24/199 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  +                L ++    +  H KS 
Sbjct: 16  VVKRDGRIVGFNEQKIMAAIRKAMMHTDKGEDDA----------LVQKITDHISIHGKSQ 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 66  M--TVEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FMEIVNIKNN 119

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LS    E   + Y  + + D      
Sbjct: 120 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVREAVTHNYIHIHDKDYYPTKS 179

Query: 204 FSSRTLIEKE-PNYAKVTA 221
            +           Y  V  
Sbjct: 180 LTCVQHPLDHILEYGFVAG 198


>gi|303233138|ref|ZP_07319811.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
 gi|302480723|gb|EFL43810.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
          Length = 765

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKIS AI  A   V          +     N+ +           
Sbjct: 26  MRIIKRNGSEVEFDISKISNAISAANKEVPEGERLTQREITFASLNVEDL-------CKS 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   V +E+IQD VE  +M   H  + R+Y++YR  ++  R   +   +   +   
Sbjct: 79  AGHTVTVEEIQDMVEDQIMALNHFSVARKYIIYRYLQAQKRHRNTTDDTILSLIES 134


>gi|260912237|ref|ZP_05918789.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633671|gb|EEX51809.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 737

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  +              + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTDKGED----------ERLVQQIADRIGFAGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++           + +  +
Sbjct: 55  M--TVEDIQNQVEMELMKSSRKDVARAYIAYRNQRSVARKAKTRDV----FLEIINVKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|313900949|ref|ZP_07834439.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312954369|gb|EFR36047.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 781

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F P KI+RAI  A   V  +  S++    +  + LTE+ V  LL +    
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLAASRVAQEEGSKADY--ETAEILTEKVVN-LLNNTYQG 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E++QD V   L+++GH + +  Y+LYR ER+ +R+ ++                 
Sbjct: 62  TTPTVENVQDAVIKVLIETGHARTSEAYILYRAERTRIRSMKTRLMKSIEEITFADSNDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANIDGNTAMGTMLQYG 143


>gi|145633334|ref|ZP_01789065.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986180|gb|EDJ92770.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 108

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+  
Sbjct: 1   MNKSLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRRE 231
            +I ++  LI K+ P+Y  + AR  +  LR++
Sbjct: 61  TIIKAAADLISKDSPDYQYLAARLAIFHLRKK 92


>gi|257052675|ref|YP_003130508.1| anaerobic ribonucleoside triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
 gi|256691438|gb|ACV11775.1| anaerobic ribonucleoside-triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
          Length = 706

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 10/103 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V  FD SKI+ AI +AF A E    +        I  LT+  V RL   + S
Sbjct: 4   QVQKRDGTVEPFDRSKITTAIRQAFAAAETDPDTG-------IDALTDGVVDRL---DPS 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
              V +E IQD VE +L+++  +   + Y+LYR   +++R  +
Sbjct: 54  DGTVAVETIQDCVERTLVEADEYAAAKRYILYRHRHAELRDLE 96


>gi|317505369|ref|ZP_07963296.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
 gi|315663511|gb|EFV03251.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
          Length = 756

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 21  VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHISIHGKSQ 70

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + + Y+ YR +RS  R A++           + I  +
Sbjct: 71  M--TVEKIQDSVEMELMKSARKDVAQRYIAYRNQRSIARKAKTRDV----FMEIVNIKNN 124

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 125 DVTRENANMN 134


>gi|307565599|ref|ZP_07628079.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
 gi|307345758|gb|EFN91115.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
          Length = 698

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   + KR+G    F   KI  AI+KAF +V       ++           + ++ L  
Sbjct: 1   MQNFTITKRDGSKEMFSLDKIMGAILKAFESVNAPTDLAAVS----------KILSDLTI 50

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           HN     + +EDIQ+QVE +LM+ G++ + + +++YR + S  R  Q   K
Sbjct: 51  HND----ITVEDIQNQVEQALMKEGYYDVAKSFIVYRHQHSQDRETQDKIK 97


>gi|291526100|emb|CBK91687.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale DSM 17629]
          Length = 735

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N      T      +
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASN----VETACENMKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 57  S---PSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 108


>gi|222109329|ref|YP_002551593.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax ebreus
           TPSY]
 gi|221728773|gb|ACM31593.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax ebreus
           TPSY]
          Length = 675

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A  A    G       +D  + LT Q  T++L H    
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARAGQATGEFG-------EDEARLLTAQ-ATKVLIHRFHG 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA +  
Sbjct: 67  EAPAIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRADRQT 110


>gi|291527165|emb|CBK92751.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N      T      +
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASN----VETACENMKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 57  S---PSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 108


>gi|222153867|ref|YP_002563044.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           uberis 0140J]
 gi|222114680|emb|CAR43757.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           uberis 0140J]
          Length = 731

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD +KI  A++KA + V         +++ I + +  + + R   +
Sbjct: 12  PDIKVIKRDGRLVSFDTTKIYSALLKASLEVTKMSPLMEAKLEAISERVVAEIIDRFPNN 71

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 72  ------VKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 110


>gi|329961239|ref|ZP_08299419.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
 gi|328532002|gb|EGF58816.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
          Length = 735

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  +                L  Q    +     S 
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDM----------QLIRQITDHISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEAIQDLVELELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|164686917|ref|ZP_02210945.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
 gi|164604040|gb|EDQ97505.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
          Length = 786

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD + I++AI  A   V  K  +      +I + +  Q V+ LL      
Sbjct: 5   IKKRDGRKVLFDKNCITKAIFAAASEVAEKENTEPNY--EIAEGVAAQVVS-LLNKKFVD 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
            I  +EDIQD V   L+++GH K +  ++LYR ERS +R ++S 
Sbjct: 62  KIPTVEDIQDAVVKVLIENGHAKTSEAFILYRNERSRIRNSKSR 105


>gi|313905496|ref|ZP_07838860.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
 gi|313469680|gb|EFR65018.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
          Length = 747

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             VIKRNG   +FD  KI  AIMKA   V       + ++Q I  N++ +        + 
Sbjct: 10  TNVIKRNGEEVAFDRKKIYNAIMKANKEVGRIHQMSNYQIQAITDNVSAKV-------HA 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           S   V++EDIQD VE  +M+   +++ ++YV YR +R+  R + +       +  +    
Sbjct: 63  STHAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRTLARKSNTTDDGILALIDQNNEE 122

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 123 VKQENSNKNPV 133


>gi|167758690|ref|ZP_02430817.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
 gi|167663886|gb|EDS08016.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
          Length = 729

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             VIKR+G   SFD  KI  AI KA   V+        ++  I  N+  +          
Sbjct: 7   TNVIKRSGEEVSFDLEKIINAIRKANKEVDRLHQMNEYQINAIADNIAHRVEE------- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               V++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +   + 
Sbjct: 60  IPHAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNTTDNGILSLLEHIN 117


>gi|256826696|ref|YP_003150655.1| anaerobic ribonucleoside triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
 gi|256582839|gb|ACU93973.1| anaerobic ribonucleoside-triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
          Length = 740

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI  AI KA   V  +      ++     N+T +          
Sbjct: 1   MKVIKRNGSEVIFDVTKIVNAIAKANEEVVPENRLSQAQILTAANNVTTECEA------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  +M  G  ++ R+Y++YR  ++  RA+ +       +  
Sbjct: 54  CGHAPAVEEIQDMVEDQIMALGCFEVARKYIIYRYLQNQKRASNTTDDKILSLIE 108


>gi|288928325|ref|ZP_06422172.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331159|gb|EFC69743.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 737

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  +              + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTDKGED----------ERLVQQIADRIGFVGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++           + +  +
Sbjct: 55  M--TVEDIQNQVEMELMKSSRKDVARAYISYRNQRSVARKAKTRDV----FLEIINVKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|150392202|ref|YP_001322251.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
 gi|149952064|gb|ABR50592.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
          Length = 784

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL-LQHN 87
           VQV+KR+G    FD  KI  AI KA                 I +NL+ +    + L+ +
Sbjct: 2   VQVMKRDGRAVFFDSEKIIHAIEKAMAETTSG----------IDQNLSREIAKTIELEID 51

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           KS   +H+EDIQD VE  LM S    + + Y++YR +RS  R      +  
Sbjct: 52  KSLTSIHVEDIQDIVENLLMDSNRKDVAKRYIIYRNKRSQSRNKVKKVREQ 102


>gi|238924749|ref|YP_002938265.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
 gi|238876424|gb|ACR76131.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
          Length = 746

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       + ++++I  N+             
Sbjct: 12  MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTADQIEEIASNVETACENM------ 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 66  -KRSPSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 119


>gi|255103283|ref|ZP_05332260.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 741

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G +  FD  KI  AI K+F+++  KG S  +  +++   + ++        NK 
Sbjct: 3   NVVKRDGRIVPFDEKKIINAIEKSFLSLRNKGKSE-VFDRELATLIAKKI------KNKP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              +HIEDIQD +E SLM S    + +EY+ YRE+R+  R  ++++ 
Sbjct: 56  CEKMHIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRKTYND 102


>gi|257784926|ref|YP_003180143.1| anaerobic ribonucleoside triphosphate reductase [Atopobium parvulum
           DSM 20469]
 gi|257473433|gb|ACV51552.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium parvulum
           DSM 20469]
          Length = 740

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +F+  KI  AI KA   V          +Q    N+T++         K
Sbjct: 1   MKIIKRNGSEVTFEVEKIVNAIAKANAEVPEDQRLTEREIQFASLNVTDECE-------K 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           +   V +E++QD VE  LM     ++ R+Y++YR  ++  R   +       +  
Sbjct: 54  AGHTVTVEEVQDLVEDQLMALDRFEVARKYIIYRYIQNQKRHKNTTDDKILSLIE 108


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V KR+G V +F   KI  AI KA  A +         +   + ++ E       +H  S
Sbjct: 5   HVTKRDGSVKTFKIDKIKVAIHKAMQAADSGNLDDVDNISQKVLDVIESI-----KHTDS 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             I  IE IQ+ VE  LM SG HK+ + Y+LYR E S  R   
Sbjct: 60  RYIPSIEGIQNIVEEQLMGSGFHKVAKAYILYRNEHSKDRKHN 102


>gi|260888087|ref|ZP_05899350.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|330839966|ref|YP_004414546.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|260862116|gb|EEX76616.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|329747730|gb|AEC01087.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
          Length = 777

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR G +  FD  KI+ AI KA +      +      Q  ++ LT+  + R+    + 
Sbjct: 4   NIQKRTGQIVPFDAEKITDAIRKANLE-----SIDETFSQHQLEKLTKSVIHRI----EG 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE +L+++      + Y+LYR E + +R A+             +   
Sbjct: 55  EETPAVEFIQDAVEKALIKNNFASTAKAYILYRAEHAKIRDAEGDLMDIYNELTFKRAKD 114

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 115 ADIKRENANIDADTAMGTMLKYG 137


>gi|160937929|ref|ZP_02085287.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439155|gb|EDP16909.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
          Length = 719

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  A  GK      +++DI   +  + V       K
Sbjct: 1   MKIIKRNGAEEDFDNNKIVVAVAKANTAA-GKNKLSLEQIKDIADYVEYKCV-------K 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A +   
Sbjct: 53  LNRAVSVEEIQDMVENQIMSTGAFELAKDYVRYRYQRSLIRKANTTDN 100


>gi|239627658|ref|ZP_04670689.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517804|gb|EEQ57670.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 719

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA +A        S    + IK++ +    +  + N+
Sbjct: 1   MKIIKRNGAEEDFDINKIVVAVSKANVAAGK-----SKLSMEQIKDIADYVEYKCDKLNR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +   V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A +   
Sbjct: 56  A---VSVEEIQDMVENQIMSTGAFELAKDYVRYRFQRSLIRKANTTDN 100


>gi|189465495|ref|ZP_03014280.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
 gi|189437769|gb|EDV06754.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
          Length = 735

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 20/166 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  +     +      +I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTDKGEDLQ------LIRQITDHI------SFKGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           ++I  +
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIIEIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
           D T  + N        M+++ A    +  V   ++  E  + +++ 
Sbjct: 109 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVHNN 154


>gi|167754489|ref|ZP_02426616.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
 gi|167659114|gb|EDS03244.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
          Length = 696

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   +F   KI RAI KAF++V                  T+  +T +L      
Sbjct: 5   IVKRDGTREAFSMEKIQRAIAKAFLSVGSFA--------------TQDVITNILSRVSVT 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQ+QVE +LM   ++ + + Y+LYR+  ++ R  +   +
Sbjct: 51  DGISVEEIQNQVEVALMAERYYTVAKAYMLYRQRHTEDREVRDKLQ 96


>gi|299145838|ref|ZP_07038906.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298516329|gb|EFI40210.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 733

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF + + +     +   D   +LT            
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAFDSKQVEYDPAIVESVDKSISLT-----------Y 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + + V +E IQD VE +LMQ G++ I + ++LYRE+R   R
Sbjct: 50  TNVPVSVETIQDYVERALMQFGYYDIAKTFILYREQRKSTR 90


>gi|189346576|ref|YP_001943105.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           limicola DSM 245]
 gi|189340723|gb|ACD90126.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           limicola DSM 245]
          Length = 721

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P  +   +VIKR+G    FD  KI  A+ +A  AV     +++  + D           R
Sbjct: 3   PHTMVCREVIKRDGRKVPFDAEKIVYAVFRALRAVGRADRAKAAVIADDAI--------R 54

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            L +  +  +  +EDIQD  E SL         + Y++YR +   +R A+ 
Sbjct: 55  QLYNPCAGTVPSVEDIQDMAEKSLFLHREFDAAKAYIIYRHQHQYMREAKE 105


>gi|195978954|ref|YP_002124198.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975659|gb|ACG63185.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 732

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I + +  + + R    
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|257063213|ref|YP_003142885.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790866|gb|ACV21536.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 737

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD SKI  AI  A   V  K      +V    +N+ +Q          
Sbjct: 1   MKIIKRNGSEVTFDISKIINAIKAANAEVSEKERLTERQVVYAAQNVADQCEAA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  +M+    ++ R+Y++YR  +   R   +   
Sbjct: 55  -GHSVSVEEIQDMVEDEIMKLDRFEVARKYIIYRYVQGIKRQKNTTDD 101


>gi|225869406|ref|YP_002745354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702682|emb|CAX00785.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 732

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I + +  + + R    
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|225871404|ref|YP_002747351.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
 gi|225700808|emb|CAW95505.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
          Length = 732

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I + +  + + R    
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|224539203|ref|ZP_03679742.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519175|gb|EEF88280.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 735

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 23/185 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  +     +      +I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTDKGEDLQ------LIRQITDHI------SFKGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           ++I  +
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIIEIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LS    E     Y  + + D      
Sbjct: 109 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVSGNYLHIHDKDYYPTKS 168

Query: 204 FSSRT 208
            +   
Sbjct: 169 LTCVQ 173


>gi|291521908|emb|CBK80201.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Coprococcus catus GD/7]
          Length = 776

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KRNG + +FD  KI  AI +A MAVE +    +      +  LT++  ++L      
Sbjct: 4   KIQKRNGQMVAFDSVKILNAISRANMAVEDEVMEPAD-----LSYLTQKVCSQL----NP 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +V +E +QD VE +L++  + K  + Y+LYR E + +R  +S              M 
Sbjct: 55  DEVVTVEHVQDVVEETLIRFDYAKTAKAYILYRAEHTKIRQTESDLMDIYSKLTYSSAMD 114

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 115 EDIKRENANID 125


>gi|310658265|ref|YP_003935986.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii DSM 519]
 gi|308825043|emb|CBH21081.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii]
          Length = 782

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G +  F+P KI+RAI  A   V  K    +     I   LTE+ V +LL    +
Sbjct: 4   KVKKRDGRLIPFNPEKITRAIFLAASEVANKEGITADY--QIASELTEE-VRKLLNRKFA 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +EDIQD V   L+++GH K +  Y+LYR ERS +R ++S           L    
Sbjct: 61  GKIPSVEDIQDAVTKVLIETGHAKTSETYILYRAERSRIRNSRSRLMKTIEDITFLDANE 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 SDIKRENANINGNTAMGTMLQYG 143


>gi|325269325|ref|ZP_08135942.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
 gi|324988246|gb|EGC20212.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
          Length = 718

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V                     T++++L
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVNEPTDLG--------------TMSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                   + +EDIQ+QVE +LM+ G +K+ + +++YR++ ++ R      K
Sbjct: 48  ADLDIQNDIKVEDIQNQVETALMKEGFYKVAKSFIVYRQQHTEDRETLEKMK 99


>gi|319901859|ref|YP_004161587.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
 gi|319416890|gb|ADV44001.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
          Length = 735

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  +     +      +I  +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDLQ------LIHQITDHI------SFKGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  SQMTVEAIQDMVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|325969858|ref|YP_004246049.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
 gi|324025096|gb|ADY11855.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
          Length = 691

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G V   +  KI  AI KA  AV       ++ V  ++           L   K 
Sbjct: 4   QVVKRDGQVVLCEVQKIINAITKA--AVASSQDVDALEVASLV-----------LARMKG 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              + +E IQD VE +LM++G  K  + Y+LYR +R  +R  ++  K+   +   
Sbjct: 51  NNPITVEQIQDLVEQALMETGATKTAKAYILYRSQRERMREGKALIKATNALFDS 105


>gi|291529710|emb|CBK95296.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI+ A+ KA  +V           +D I  L+E           
Sbjct: 1   MKIIKRSGMEVDFDVTKIAAAVRKANNSV----VDYEKISEDEIIKLSETIENACSNM-- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +EDIQD VE  LM      + R Y+ YR  R  VR + +       +  
Sbjct: 55  -QHTPTVEDIQDMVENQLMSMKKFTLARNYITYRYRRELVRKSNTTDDQILSLIE 108


>gi|332523314|ref|ZP_08399566.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314578|gb|EGJ27563.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 731

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD +KI  A++KA M V         +++ I + +  +   R  ++
Sbjct: 12  PDIKVIKRDGRLVPFDTTKIYSALLKASMEVTPMSPLVEAKLEAISERVVAEIRDRFPKN 71

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 72  ------VKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARSQ 110


>gi|319935134|ref|ZP_08009574.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
 gi|319809959|gb|EFW06342.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
          Length = 726

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           +++IKRNG   SFD  KI+ AI KA   AVE           + I N+T     +  +  
Sbjct: 1   MKIIKRNGSEVSFDELKITAAIEKANAEAVE-----TERLSDEDIDNITNNVKYQCEKMR 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   + +E+IQ+ VE  +M+     + R+Y+ YR +R+ VR A +  +    +  
Sbjct: 56  RA---LSVEEIQNLVENEIMKLNAFAVARKYITYRYKRALVRKANTTDEQILSLIE 108


>gi|319935635|ref|ZP_08010069.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
 gi|319809512|gb|EFW05933.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
          Length = 766

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD +KI+ AI KAF A E K         D    + ++   +L   +  +
Sbjct: 5   IRKRDGRMDQFDVNKIAGAIYKAFQATEAKYDL------DTAIAVAQEVEEKLEARH--S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L+  G+ +I + Y+LYR ER+  R  +S                 
Sbjct: 57  ELPTVELVQDTVEETLISKGYVRIAKAYILYRAERTRSRDRKSRLMKTMEEITFQDAKDS 116

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 117 DLKRENANVN 126


>gi|160889395|ref|ZP_02070398.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270296553|ref|ZP_06202752.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
 gi|156860912|gb|EDO54343.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270272540|gb|EFA18403.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
          Length = 735

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +                L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGEDL----------QLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|331002724|ref|ZP_08326239.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330407137|gb|EGG86641.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 728

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             +++IKR+G    FD SKI  AI KA   V      +  +V  I   +  Q ++     
Sbjct: 5   SDMRIIKRSGAEVDFDISKIIAAIYKANAVVGEDDKLKKSQVDRIANTVENQCMSM---- 60

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 + +E+IQD VE  +M+   +++ R+Y+ YR  +S  R   +       +  
Sbjct: 61  ---NRAMSVEEIQDMVEDGIMRENAYEVARKYITYRYVQSIKRKNNTTDDKILSLIE 114


>gi|322807124|emb|CBZ04698.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 131

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 32/159 (20%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++                +L + + W 
Sbjct: 1   MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEEKKG----SFTPKTAPDLNEENFW- 55

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY- 876
                                      +  A  ID  W I++ + RQK IDQAQS NLY 
Sbjct: 56  --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 89

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
             E   K++  +Y ++W  G+KT YY+R++S    E ++
Sbjct: 90  TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDECTS 128


>gi|226324292|ref|ZP_03799810.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
 gi|225206740|gb|EEG89094.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
          Length = 729

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +VIKRNG    F   KI  AI KA   VE        ++  I + + +Q          
Sbjct: 7   TRVIKRNGEEVDFRLEKIVNAIKKANEEVENIHRMNDFQIIAIAEKIAQQAEE------- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
               V++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +   +   
Sbjct: 60  FTHAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNTTDNGILALIDHMNEE 119

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 120 VKQENSNKNPV 130


>gi|317479915|ref|ZP_07939030.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
 gi|316903860|gb|EFV25699.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
          Length = 735

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +                L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGEDL----------QLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|300694471|ref|YP_003750444.1| ribonucleotide reductase oxidoreductase protein (nrdd) [Ralstonia
           solanacearum PSI07]
 gi|299076508|emb|CBJ35833.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum PSI07]
          Length = 683

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV KR+G +  FD  KI +AI  A  A              +  +LT + + RL  
Sbjct: 1   MACTQVTKRDGMMVDFDAEKIRQAIAAAGHATREFDLP-------VAADLTTRVIGRLA- 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA ++          +
Sbjct: 53  ---DMPCPGIETIQNAVEETLVAAGYWRTARAYIVYREQHARLRALEATLVDVESTMDE 108


>gi|268323800|emb|CBH37388.1| putative anaerobic ribonucleoside-triphosphate reductase
           [uncultured archaeon]
          Length = 748

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             + KR+G +  F+  KI+ AI KA                +I + LT + +  L Q   
Sbjct: 3   TNIEKRDGRLVFFETEKITTAIAKAGAVTGEFDY-------EIAQKLTLKVLN-LAQQAI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLK 146
              +  +E++QD VE  L+ S + K  + Y++YRE+ + +R   S +  D       K+ 
Sbjct: 55  PRDVPTVEELQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSRANVDLVDQYLEKID 114

Query: 147 IMMDDGTLISFNSKRLEMIVE 167
             +++ + +SF+ + L   V 
Sbjct: 115 WQVNENSNMSFSLQGLNNYVS 135


>gi|283832328|ref|ZP_06352069.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071975|gb|EFE10084.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 97

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+  
Sbjct: 1   MNQSLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVL 233
            +I ++  LI +E P+Y  + AR  +  LR++ L
Sbjct: 61  TIIKAAADLISREAPDYQYLAARLAIFHLRKKSL 94


>gi|291550831|emb|CBL27093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus
           torques L2-14]
          Length = 719

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD  KI  A+ KA     G+      +++DI + +         + NK
Sbjct: 1   MKIIKRNGSEETFDIQKIVVAVTKADKD-NGERTLTDSQIEDIAEYVE-------FKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  +M +G  ++ R+YV YR +RS VR A +   
Sbjct: 53  LNRAVSVEEIQDMVENQIMATGAFELARKYVRYRYKRSLVRKANTTDN 100


>gi|309782389|ref|ZP_07677113.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
 gi|308918726|gb|EFP64399.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
          Length = 687

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A        +       ++LT   V     H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEA-------QHLTSGVVA----HLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE 112


>gi|241663376|ref|YP_002981736.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|240865403|gb|ACS63064.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 687

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A        +       ++LT   V     H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEA-------QHLTSGVVA----HLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE 112


>gi|187929185|ref|YP_001899672.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|187726075|gb|ACD27240.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
          Length = 687

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A        +       ++LT   V     H   
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEA-------QHLTSGVVA----HLAP 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +
Sbjct: 58  LPCPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE 112


>gi|325473891|gb|EGC77079.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola F0402]
          Length = 708

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-KGASRSIRVQDIIKNLTEQT 79
             PE ++   V+KR+G + +++  KI +AI KA  AVEG     +++ + D +    E+ 
Sbjct: 24  AKPEILRS--VVKRSGEIEAYNRKKIEQAINKAITAVEGSPNDEKAVFLTDKV----EEK 77

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  ++    +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 78  LKNIMASRYAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|150005617|ref|YP_001300361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212693359|ref|ZP_03301487.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|237710101|ref|ZP_04540582.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|237723614|ref|ZP_04554095.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D4]
 gi|265754020|ref|ZP_06089375.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294778572|ref|ZP_06743994.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|149934041|gb|ABR40739.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212664124|gb|EEB24696.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|229437962|gb|EEO48039.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           dorei 5_1_36/D4]
 gi|229456194|gb|EEO61915.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|263235734|gb|EEZ21258.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294447521|gb|EFG16099.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
          Length = 697

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKETFSLDKIKNAIAKAFLSVGSFA--------------TQDVITTVLSRVSVS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGMNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 83/575 (14%), Positives = 174/575 (30%), Gaps = 69/575 (12%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I  ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG++  ++
Sbjct: 2   INSEVFIIKRDGKKETFSLDKIKNAIAKAFLSVGSFATQDVITTVLSRVSVSDGMNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLE---KLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y  V   ++L     L    +    K               +Y
Sbjct: 62  QN---QVEVALMAEH--YYSVAKAYMLYRQKHLEDREVRDKLKFLLDYCDASNPATGSKY 116

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
                 E      L   +   + + L   L  +R    + +  + L DRY         E
Sbjct: 117 DANANVENKNIATLIGELPKSNFIRLNRRLLTDR---LKDMYGKELSDRYL--------E 165

Query: 316 MPQAFFMRVAMGLALKETEKEKRA-----VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           +    F+         + ++   A     +  Y  L++            + T       
Sbjct: 166 LLNHHFI--------YKNDETNLANYCASITMYPWLNNGTIAVGG--NSTAPTNLKSFCG 215

Query: 371 CFLTT---VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL-GAHIHGTNGKSQGVIP 426
            F+     V   L G     +    L   +  +G ++          I   + K + +  
Sbjct: 216 GFVNMVFIVSSMLSGACATPEF---LMYMNYFIGLEYGQEYYKYPDKIVDLSTKQRTIDK 272

Query: 427 FL-KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +         ++NQ    +     +    + D   F  L  N         D N+ +W+
Sbjct: 273 IITDCFEQIVYSINQPTGARNFQAVFWNVAYYDKYYFESLFGNFFFPDGSQPDWNSLSWL 332

Query: 486 PDLFMK-RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISA 542
              FMK    +     L  P E   L    G   +  Y ++  E  ++      +   +A
Sbjct: 333 QKRFMKWFNKERTRTVLTFPVETMALLTKDGDVLDKEYGDFTAEMYSEGHSFFTYMSDNA 392

Query: 543 VALWR--KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            +L    ++   + + G  +                GV   S     I LN   +     
Sbjct: 393 DSLSSCCRLRNEIQDNGFSYTLG-----------AGGVSTGSKSVLTINLNRCIQHAV-- 439

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVR-VLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
              S  L   F     D   L   ++ A    L  +       +  A   N   + + +G
Sbjct: 440 --KSGILYPFFLEEVVD---LVHKVQLAYNENLKLLQSKGMLPLFDAGYINMNRQYLTIG 494

Query: 660 LMGFQSALHLLHIPY-ASPEAVEIADESMEFISFH 693
           + G   A   + I    +P+      E +  I  +
Sbjct: 495 VNGLVEAAQFMGIEINDNPKYEAFVQEILGMIERY 529


>gi|328943623|ref|ZP_08241088.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
 gi|327491592|gb|EGF23366.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
          Length = 740

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    F+  KI  AI  A   V          +     N+ +           
Sbjct: 1   MKIIKRNGSEVEFNLHKIINAISAANKEVPEDERLTEREITFASLNVEDL-------CKN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   V +E+IQD VE  +M   H  + R+Y++YR  ++  R   +   +   +   
Sbjct: 54  AGHTVTVEEIQDMVEDQIMALNHFSVARKYIIYRYLQAQKRHRNTTDDTILSLIES 109


>gi|42526839|ref|NP_971937.1| anaerobic ribonucleoside triphosphate reductase [Treponema
           denticola ATCC 35405]
 gi|41817154|gb|AAS11848.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola ATCC 35405]
          Length = 708

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-KGASRSIRVQDIIKNLTEQT 79
             PE ++   V+KR+G + +++  KI +AI KA  AVEG     +++ + D +    E+ 
Sbjct: 24  AKPEILRS--VVKRSGEIEAYNRKKIEQAINKAITAVEGSPNDEKAVFLTDKV----EEK 77

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  ++    +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 78  LKNIMASRYAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|291513995|emb|CBK63205.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes shahii
           WAL 8301]
          Length = 697

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G    F   KI RAI KAF++V G                T+  +T +L 
Sbjct: 3   ISEIYIVKRDGKRAPFSVEKIKRAISKAFLSVGGYA--------------TDDDLTSVLS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +  + +E+IQ+QVE +LM   +  + + Y+LYR++ S+ R  +   +
Sbjct: 49  RVRVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHSEDREDREKLE 99



 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 17/179 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           ++ I+  DG    F+ ++++  + +A    G       +    +   + DG+S  +++  
Sbjct: 5   EIYIVKRDGKRAPFSVEKIKRAISKAFLSVGGYATDDDLTSVLSRVRVSDGMSVEEIQNQ 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT-----HHEMQCLYPEYF 256
           +      + E+   Y  V   ++L   R++       + +          +      +Y 
Sbjct: 65  V--EVALMAER---YFAVAKSYMLY--RQKHSEDREDREKLEFLINYCDAKNPATGSKYD 117

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
                E      L   +   + + L   L  +R    + +  + L D+Y   +NG  I 
Sbjct: 118 ANANVENKNIATLIGELPKRNFIRLNRRLLTDR---IKEMYGKELSDKYLRLLNGHFIY 173


>gi|218680498|ref|ZP_03528395.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CIAT 894]
          Length = 144

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 32/168 (19%)

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T G+ N N  A+ PT +I+ I   + SI P    + ++                    
Sbjct: 3   VMTSGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK------------------- 43

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                E  I  + Y          I +D    +  A+EI    +I++ +   + +DQ  S
Sbjct: 44  -----EGKIGRVYYPA------PFITNDNLDYYQDAYEIGAEKIIDTYAAATRRVDQGLS 92

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           L L+  D  + + ++     AW  G+KT YY+R R    +  + ++G 
Sbjct: 93  LTLFFRDTATTRDINKAQIYAWKKGIKTIYYIRLRQMA-LSGTEVQGC 139


>gi|94995281|ref|YP_603379.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|94548789|gb|ABF38835.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|306826483|ref|ZP_07459794.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
 gi|304431342|gb|EFM34340.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|238577950|ref|XP_002388548.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
 gi|215449937|gb|EEB89478.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
          Length = 267

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 18/119 (15%)

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V  +L+ +L    LWD+ M + +  H+GS+ NI  IPD++K I+ T +EI    +++ A+
Sbjct: 2   VCPWLLRDLVDLGLWDDNMKNMIIAHNGSVQNIPNIPDNVKAIYKTVWEISQKKVLDLAA 61

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
            R                     L  ++   W  GLKT  YYLR+R A    + T+   
Sbjct: 62  DRGGLH-----------------LPDMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQS 103


>gi|325854308|ref|ZP_08171507.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
 gi|325484102|gb|EGC87036.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
          Length = 718

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V                     T+++++
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVNEPTDLG--------------TMSKII 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                   + +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R      K
Sbjct: 48  ADLDIQNDIKVEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDRETLEKMK 99


>gi|302337969|ref|YP_003803175.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635154|gb|ADK80581.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 827

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL---LQHN 87
           +++R+GG+  +D  +I  A+ +A  A              + + LT     +L       
Sbjct: 33  IVRRDGGLVPYDRERILSAVARAIEATGRGEEGS------LAEGLTLAVEEKLRSGFAAR 86

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  +E+IQD VE +L+++G   + + Y+LYR     +R A+ 
Sbjct: 87  HPNSAPAVEEIQDIVETTLIEAGEAAVAKAYILYRARHEAIRDAKK 132


>gi|327313621|ref|YP_004329058.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
 gi|326946134|gb|AEA22019.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
          Length = 718

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +IK   + KR+G    F   KI  AI+KAF +V                     T+++++
Sbjct: 2   EIKNFTITKRDGSKERFSLDKIMNAILKAFESVNEPTDLG--------------TMSKII 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                   + +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R      K
Sbjct: 48  ADLDIQNDIKVEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDRETLEKMK 99


>gi|260437342|ref|ZP_05791158.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810254|gb|EFF69459.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 708

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   ++D  KI  AI KA   V         ++  I+ ++ +  V  L     
Sbjct: 1   MKVIKRDGREVTYDRGKIIIAIHKANDEVPISERISDEKIHGIVASIEKLGVNTL----- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +E+IQD +E  LM      + + Y++YR +R  +R + +  +S
Sbjct: 56  -----QVEEIQDIIEQKLMAERKFVLAKTYIIYRYQRQMIRKSNTTDES 99


>gi|291458234|ref|ZP_06597624.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418767|gb|EFE92486.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 731

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E +    VIKRNG    FD  KI  AI KA   V         +++   + +  Q   
Sbjct: 2   AAELLIRTNVIKRNGQEVKFDIQKIVNAIQKANHEVALVYQMNEYQIRGAAEKVARQI-- 59

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
                  S   V++EDIQD VE ++M+   +++ ++YV YR +R   R + +       +
Sbjct: 60  -----GSSKHAVNVEDIQDMVETAIMEMRGYEVAQKYVRYRYKRELARKSNTTDDEILSL 114

Query: 142 APKLK 146
             +  
Sbjct: 115 IDQAN 119


>gi|302345375|ref|YP_003813728.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150044|gb|ADK96306.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
          Length = 719

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++K   + KR+G    F   KI  AI+KAF +V                     T+++++
Sbjct: 2   EMKNFTITKRDGSKDRFSLDKIMNAILKAFESVNEPTDLG--------------TLSKII 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            +      + +EDIQ+QVE +LM+ G++++ + +++YR++ ++ R      K
Sbjct: 48  ANLNIQNDIKVEDIQNQVELALMKEGYYQVAKSFIVYRQQHTEDRETLEKMK 99


>gi|15675860|ref|NP_270034.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes M1 GAS]
 gi|19746977|ref|NP_608113.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS8232]
 gi|50915138|ref|YP_061110.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808133|ref|ZP_00365919.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|139474550|ref|YP_001129266.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209560220|ref|YP_002286692.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes NZ131]
 gi|13623093|gb|AAK34755.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M1 GAS]
 gi|19749231|gb|AAL98612.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS8232]
 gi|50904212|gb|AAT87927.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|134272797|emb|CAM31074.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209541421|gb|ACI61997.1| Ribonucleotide reductase of class III (anaerobic), large subunit
           [Streptococcus pyogenes NZ131]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|71911606|ref|YP_283156.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|71854388|gb|AAZ52411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|71904439|ref|YP_281242.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71803534|gb|AAX72887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|94991370|ref|YP_599470.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94544878|gb|ABF34926.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
          Length = 732

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|284794820|gb|ADB93746.1| gp53 [Mycobacterium phage RedRock]
          Length = 687

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 160/518 (30%), Gaps = 140/518 (27%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV------------------------A 437
            D + VR +GA +    G++ G  PF ++                               
Sbjct: 201 YDVSRVRPVGAKLKTFGGQASGPQPFAEMLIKVCKILSANVDLPLTGIDAMTIDHAIASC 260

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V  GG R+ A  + +      +EEF++++  +G+        N +  + D F   +   +
Sbjct: 261 VVAGGVRRSARMSMMHWNDPQIEEFINVKATSGEH----WTTNISVEVDDEFWAALKGQS 316

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
                          L+ +E    Y   E               A  +   +       G
Sbjct: 317 P--------------LWWQEAIGDYTTQE--------------KAERIMEALSVGAVRNG 348

Query: 558 HPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN- 613
            P +         S   +VG    V  +N C EITL         CNLG INL A   + 
Sbjct: 349 EPGMW-------DSSLSNVGEPNKVVCTNPCGEITLEPWEP----CNLGHINLAAFVTDA 397

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            + DY  L    R   R L      +     K+++    +R IG+G +G  S L L    
Sbjct: 398 GKTDYLDLIRAHRLMTRFLIR-ATFSAVADPKSREVLDRNRRIGVGHLGVASYLALTGQH 456

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y    A        + +         ELA E       + S +                 
Sbjct: 457 YN---ATAANTRFKKLLR--------ELATEVDG----EASRF----------------C 485

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            EL +    +                      IAPT T+A + GVS+ I P +   + + 
Sbjct: 486 HELRIPVPVKKR-------------------TIAPTGTVAKLAGVSEGIHPIFAKYFNRR 526

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE------------RIPDDL 841
                 +       ++L +       +  DL   + ++  I               P+  
Sbjct: 527 IRFNKVSD-----FDQLMEMYNQGYHVEDDLFAPNTAVVTIPTKDTLLAAVEALWGPERA 581

Query: 842 KKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLD 878
           + +  +A E+    ++   +  Q  W D A S    +D
Sbjct: 582 ESLVQSAGELSLQEMLSVQATYQTCWADNAVSFTANVD 619


>gi|255691221|ref|ZP_05414896.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
 gi|260623135|gb|EEX46006.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
          Length = 797

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFNATGIQDE------QQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKALMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|198277606|ref|ZP_03210137.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
 gi|198270104|gb|EDY94374.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
          Length = 794

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 12/112 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +++IKR+G   +F  +KI+ AI KAF A            ++ +  +T Q V+    
Sbjct: 3   LTEIRIIKRDGKQENFSAAKITNAIGKAFEATGIPQQ------KEELDLITRQVVSHF-- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              S   + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++H K 
Sbjct: 55  ---SQPTMGVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERDRKTHIKH 102


>gi|153809477|ref|ZP_01962145.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
 gi|149127858|gb|EDM19081.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
          Length = 797

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLIADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKALMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|21911330|ref|NP_665598.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS315]
 gi|28896704|ref|NP_803054.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes SSI-1]
 gi|21905545|gb|AAM80401.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS315]
 gi|28811958|dbj|BAC64887.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes SSI-1]
          Length = 732

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARSQ 111


>gi|281355198|ref|ZP_06241692.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318078|gb|EFB02098.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 778

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V S+D  KI RAI KA  A      +    +     +        +++    
Sbjct: 4   NIVKRDGRVVSYDDGKIVRAIQKAMDAAGHTAKAGEAAIIAAAAS-------AIVEEKCP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                +EDIQD VE +LM++G  ++ + Y+LYR ER+  R  ++
Sbjct: 57  GKAPQVEDIQDAVEIALMRNGLEEVAKSYILYRAERTRTREMKT 100


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  FD  +I RA+ KA  A                  + E+ V   ++     
Sbjct: 335 VVKRDGRVVPFDELRIVRAVEKAGAATGVALDP----------GVIERQVLGPIKRKARQ 384

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +HIE+IQ+ VE  LM+S +  + R Y+LYREER+  R  Q +  
Sbjct: 385 QRLHIEEIQNLVEEGLMKS-YPAVARAYILYREERAKARRDQPYGC 429


>gi|225376983|ref|ZP_03754204.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
 gi|225211160|gb|EEG93514.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
          Length = 720

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI KA  +V         ++Q+I+ N+ E+    + +   
Sbjct: 1   MKIIKRSGMEDNFDIKKIEAAIRKANESVIDYEKLTEEKIQEILANV-EKACENMKR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  +M      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 57  ---SPSVEEIQDMVENQIMNQRAFNVARNYITYRYKRALVRKSNSTDEQILSLLE 108


>gi|94989434|ref|YP_597535.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94993323|ref|YP_601422.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94542942|gb|ABF32991.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94546831|gb|ABF36878.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
          Length = 732

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I   +  + + R    
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAEIIERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARSQ 111


>gi|301308020|ref|ZP_07213974.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
 gi|300833490|gb|EFK64106.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
          Length = 735

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|313890379|ref|ZP_07824010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121222|gb|EFR44330.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 731

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD +KI  A++KA + V         +++ I + +  +   R  ++
Sbjct: 12  PDIKVIKRDGRLVSFDTTKIYSALLKASIEVTKMSPLVEAKLEAISERVVAEIRDRFPKN 71

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 72  ------VKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARSQ 110


>gi|298374346|ref|ZP_06984304.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
 gi|298268714|gb|EFI10369.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
          Length = 735

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|256838798|ref|ZP_05544308.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
 gi|256739717|gb|EEU53041.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
          Length = 735

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|153853583|ref|ZP_01994963.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
 gi|149753738|gb|EDM63669.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
          Length = 729

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             VIKRNG   +FD  KI  AI  A   V+        ++  +  N+ ++          
Sbjct: 7   TNVIKRNGEEVAFDLEKIINAIKGANKDVDKLHRMNEYQIMAVADNVAKKIEE------- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           S   V++EDIQD VE  +M+   +++ ++YV YR +R  +R   +       +   + 
Sbjct: 60  STHAVNVEDIQDMVETGIMELRGYEVAQKYVRYRYKRELMRKTNTTDNGILALLDHMN 117


>gi|153814148|ref|ZP_01966816.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|317499950|ref|ZP_07958186.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087827|ref|ZP_08336752.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848544|gb|EDK25462.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|316898667|gb|EFV20702.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409522|gb|EGG88963.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 719

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  A+ KA  + EG+  + S +++DI + +         + NK
Sbjct: 1   MKIIKRNGAEEVFDIKKIVIAVTKADSSSEGRSLTDS-QIEDIAEFVE-------FKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  +M +G  ++ + YV YR +RS VR A +   
Sbjct: 53  LNRAVSVEEIQDLVEDQIMATGAFELAKRYVRYRYKRSLVRKANTTDN 100


>gi|262382704|ref|ZP_06075841.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
 gi|262295582|gb|EEY83513.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
          Length = 735

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|150009988|ref|YP_001304731.1| anaerobic ribonucleoside triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938412|gb|ABR45109.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
          Length = 735

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|288800589|ref|ZP_06406047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332802|gb|EFC71282.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 736

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KIS AI KA +       S          NL +Q   R+     S 
Sbjct: 5   VVKRDGRIVGFNELKISGAIRKAMLHTNNGEDS----------NLIQQITDRISMSGNSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E+IQ++VE  LM+S    + R Y+ YR  R+  R A++           + +  +
Sbjct: 55  M--TVEEIQNKVENELMKSRRKDVARAYISYRNLRNVARKAKTRDI----FLEIINVKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|255012747|ref|ZP_05284873.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           2_1_7]
          Length = 735

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|299148081|ref|ZP_07041144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298514264|gb|EFI38150.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 797

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 102


>gi|329121537|ref|ZP_08250160.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
 gi|327468836|gb|EGF14309.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
          Length = 730

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G       ++  + + + +         +K 
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDGIHRMNHYQICGVAETIAK-------FADKC 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +   
Sbjct: 62  SHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNTTDD 108


>gi|313892083|ref|ZP_07825679.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
 gi|313119475|gb|EFR42671.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G       ++  + + + +         +K 
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDGIHRMNHYQICGVAETIAK-------FADKC 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +   
Sbjct: 62  SHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNTTDD 108


>gi|160883453|ref|ZP_02064456.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|237720231|ref|ZP_04550712.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|293371155|ref|ZP_06617692.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|156111173|gb|EDO12918.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|229450783|gb|EEO56574.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|292633813|gb|EFF52365.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 797

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 102


>gi|261368242|ref|ZP_05981125.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
 gi|282569755|gb|EFB75290.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
          Length = 740

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA   V       + ++ ++   +    ++R      
Sbjct: 1   MKIIKRNGSEAVFDITKIIAAVTKANNVVPESQRLTNHQIIELADKVQASCLSR------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +++E+IQD VE ++M +G +++ R+Y+ YR  +S  R   +   
Sbjct: 55  -GHAMNVEEIQDIVEDAIMATGAYEVARKYITYRYVQSLKRTHNTTDD 101


>gi|330996499|ref|ZP_08320381.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329573055|gb|EGG54674.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 737

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  E      +   +++I  + E    R        
Sbjct: 5   VVKRDGRIVGFNARKIGDAIRKAMVHTE------AGENEELIHLICEHVTNR------GK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEEIQDAVEMELMKSRRKDVAQKYIAYRNQRSIARKAKTRDI----FQEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|238917493|ref|YP_002931010.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
 gi|238872853|gb|ACR72563.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
          Length = 726

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD SKI  A+ KA M V         +++ I  N+            +
Sbjct: 1   MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVES-------ICKE 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +E+IQD VE  +M      + R+Y+ YR +R+ VR + S  +    +  
Sbjct: 54  MNRSLSVEEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNSTDEQILSLLE 108


>gi|293370688|ref|ZP_06617238.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|292634212|gb|EFF52751.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 697

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99


>gi|218130192|ref|ZP_03458996.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
 gi|217987696|gb|EEC54024.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
          Length = 736

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|317476686|ref|ZP_07935930.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907149|gb|EFV28859.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 736

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|237722911|ref|ZP_04553392.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
 gi|229447433|gb|EEO53224.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
          Length = 697

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99


>gi|315652796|ref|ZP_07905770.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
 gi|315484998|gb|EFU75406.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
          Length = 722

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  AI KA   V      +  +V  I   +  Q          
Sbjct: 1   MRIIKRSGAEVDFDISKIIAAIYKANAVVGEDDKLKKSQVDRIANTVENQ-------CWS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +E+IQD VE  +M+   +++ R Y+ YR  ++  R   +       +  
Sbjct: 54  MNRAMSVEEIQDMVEDGIMRENAYEVARRYITYRYVQNIKRKNNTTDDKILSLIE 108


>gi|260173949|ref|ZP_05760361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922217|ref|ZP_07918457.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
 gi|313696092|gb|EFS32927.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
          Length = 797

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGFQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 102


>gi|160882839|ref|ZP_02063842.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
 gi|156111703|gb|EDO13448.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
          Length = 697

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99


>gi|298385135|ref|ZP_06994694.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
 gi|298262279|gb|EFI05144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
          Length = 797

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATGIQDE------QQLIADVTMSVISQFTN----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKALMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|210635440|ref|ZP_03298544.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
 gi|210158387|gb|EEA89358.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
          Length = 740

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A   V+        +V+   +N+ E+  T       
Sbjct: 1   MKIIKRSGSEVTFDLQKIINAINGANSEVKSGERLTDRQVRYAAENVAERCETA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               V +E+IQD VE  LM     ++ R Y++YR  +   R   +       +  
Sbjct: 55  -GHTVSVEEIQDMVEDELMALDRFEVARHYIIYRYVQGLKRQKNTTDDKILSLIE 108


>gi|294675471|ref|YP_003576087.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294473461|gb|ADE82850.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 746

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+  K+  AI KA +  +              + L  Q   R+ Q  +S 
Sbjct: 5   VKKRDGRIVGFNEQKVMAAIRKAMLHTDKGED----------ERLLYQITDRIAQRGESQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--TVEEIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTREV----FLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|291522895|emb|CBK81188.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 708

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   +++ SKI  AI KA   V  +    +  +++I+  +  +   R+L    
Sbjct: 1   MIVIKRDGQEVNYNRSKIIVAIGKANEEVPEEERISNQEIEEIVSYVETRKRKRIL---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM  G   + + Y++YR  R  VR A +   S
Sbjct: 57  ------VEDIQDIIEQKLMALGKFDLAKRYIVYRYTRELVRRANTTDDS 99


>gi|260173775|ref|ZP_05760187.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922040|ref|ZP_07918280.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
 gi|313695915|gb|EFS32750.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
          Length = 697

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99


>gi|306832414|ref|ZP_07465567.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425454|gb|EFM28573.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 738

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   +
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQ 111


>gi|288906369|ref|YP_003431591.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           gallolyticus UCN34]
 gi|325979382|ref|YP_004289098.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733095|emb|CBI14676.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus gallolyticus UCN34]
 gi|325179310|emb|CBZ49354.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 738

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   +
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQ 111


>gi|332652519|ref|ZP_08418264.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332517665|gb|EGJ47268.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 712

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D SKI  AI KA   V  +      R++ I+  + +    +L     
Sbjct: 5   MKVVKRDGSVVDYDRSKIITAIQKANAEVSEEEQLSLDRIEAIVSRIEDLGRDKLP---- 60

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +E+IQD VE  L+      + + Y++YR  R+ VR   +  +S
Sbjct: 61  ------VEEIQDLVEQGLVNENKFYLAKTYIIYRYTRALVRKQNTTDES 103


>gi|299146608|ref|ZP_07039676.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298517099|gb|EFI40980.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 697

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99


>gi|323128211|gb|ADX25508.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 732

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I + +  +   R    
Sbjct: 13  PEIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLIEAKLEAISERVIAEINERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|171778524|ref|ZP_02919651.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282747|gb|EDT48171.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 741

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   +
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAEIFDRFKDN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQ 111


>gi|145527770|ref|XP_001449685.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417273|emb|CAK82288.1| unnamed protein product [Paramecium tetraurelia]
          Length = 183

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 15/181 (8%)

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           D   +  H +  A       ++  DG   + + +++   ++   S LQ ++  +++ +  
Sbjct: 4   DPDYSFEHLQELAKQKNISYVLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVI 63

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + MY+G++   L+     +   +    P Y+ + AR        E   +  +   K   H
Sbjct: 64  QGMYEGITTVQLDNLAAETCAYMNLVHPQYSLLAARIA------ETSESFSEVAIKL--H 115

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                Y       I + V   ++           +  ++ YERD+ +++ G + L   Y 
Sbjct: 116 SFTDKYGRPAP-LIADDVYKIIMDNK------DIIQKEINYERDYQYDFFGFKTLERSYL 168

Query: 307 L 307
           L
Sbjct: 169 L 169


>gi|218132283|ref|ZP_03461087.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992798|gb|EEC58799.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
          Length = 718

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  AI KA  A       R    ++ I ++ +    +  + N+
Sbjct: 1   MKIIKRNGSEEEFDIDKIIMAIRKANDA-----GIRKELTEEQIDDIADYIEYKCEKMNR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               + +E+IQD VE  +M  G  +I + YV YR  RS VR + +   
Sbjct: 56  ---TLSVEEIQDLVENQIMAKGAFEIAKGYVRYRYTRSLVRKSNTTDD 100


>gi|332886401|gb|EGK06645.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas
           mossii DSM 22836]
          Length = 735

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  E      SI ++ I   ++ Q            
Sbjct: 5   VVKRDGRIVGFNEEKIMAAVRKAMLHTE--QGEDSILIRRITDYVSCQ----------GN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S   ++ ++Y+ YR++RS  R A++           ++   +
Sbjct: 53  EQMTVEQIQDMVEMELMKSPRKEVAKKYIAYRDKRSIARKAKTRDM----FLEIIETKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|306834528|ref|ZP_07467641.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
 gi|304423330|gb|EFM26483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
          Length = 738

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA + V         +++ I  N+  +   R   +
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKASINVTKMSPVVEAKLETISDNIIAEIFDRFKDN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQ 111


>gi|152987792|ref|YP_001348725.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PA7]
 gi|150962950|gb|ABR84975.1| anaerobic ribonucleoside-triphosphate reductase [Pseudomonas
           aeruginosa PA7]
          Length = 675

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A  A     + ++       + L E+ V RL +       
Sbjct: 15  KRNGREVPFDPGKIERAIAAAGQATGELDSRQA-------QALAERVVERLPER----AC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLY 121
           + IE +QD VE  LM++GH+   R YV+Y
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVY 92


>gi|332829841|gb|EGK02483.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 735

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  E      S  ++ I   ++ Q            
Sbjct: 5   VIKRDGRIVGFNEEKIMAAIRKAMLHTE--QGEDSSLIRRITDFISCQ----------GN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S   +  ++Y+ YR++R+  R A++       I  K   +  
Sbjct: 53  EQMTVEQIQDMVEVELMKSPRKEAAKKYIAYRDQRNIARKAKTRDMFLEIIETKSNDITR 112


>gi|251783466|ref|YP_002997771.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392098|dbj|BAH82557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 732

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V    A  S  ++  ++ ++E+ +  + + 
Sbjct: 13  PEIKVIKRDGRLVNFDATKIYSALLKASMKV----ARMSPLIEAKLEAISERVIAEINER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|167762161|ref|ZP_02434288.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
 gi|167699804|gb|EDS16383.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
          Length = 736

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VLKRDGRIVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|320547636|ref|ZP_08041921.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
 gi|320447711|gb|EFW88469.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
          Length = 738

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA   V         +++ I  N+  +   R   +
Sbjct: 13  PTVKVIKRDGRSVNFDADKIYNALLKASNNVTKMSPVIEAKLESISDNIVAEIFDRFKDN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQ 111


>gi|29347408|ref|NP_810911.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253570570|ref|ZP_04847978.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
 gi|29339308|gb|AAO77105.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251839519|gb|EES67602.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
          Length = 797

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATGIQNE------QQLIADVTMSVISQFTN----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKALMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|194337606|ref|YP_002019400.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310083|gb|ACF44783.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 719

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    FD  KI  A+ +A  AV     +++  +         +   R L+   +  
Sbjct: 10  IKRDGRKVPFDAEKIVYAVFRALRAVGKADRTKAAGI--------ARDAIRELESAMNGN 61

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +E++QD VE +L         + Y++YR +   +R A+ 
Sbjct: 62  VPSVEEMQDMVEKTLFLHREFDAAKAYIIYRHQHQYMRDAKE 103


>gi|329955958|ref|ZP_08296761.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
 gi|328525338|gb|EGF52388.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
          Length = 736

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  AI KA +  +     +      +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIVTAIRKAMLHTDKGEDMQ------LIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|322374031|ref|ZP_08048565.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
 gi|321276997|gb|EFX54068.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
          Length = 734

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA  A+        ++++ I   +  +   R  Q+
Sbjct: 13  PDIKVIKRDGRMVAFDSSKIYEAILKASDAITPVTPLIEVKLESIANRIVAEINDRFSQN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 V I +IQ  VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 73  ------VKIYEIQSIVEHELLSANEYAIAQEYINYRTKRDFERSQ 111


>gi|256822439|ref|YP_003146402.1| anaerobic ribonucleoside triphosphate reductase [Kangiella
           koreensis DSM 16069]
 gi|256795978|gb|ACV26634.1| anaerobic ribonucleoside-triphosphate reductase [Kangiella
           koreensis DSM 16069]
          Length = 679

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++++KR+     F+ +KI  A+MKA  A     A       D  + LT Q +  L    
Sbjct: 11  PLKIVKRDLTEAKFERAKIYEAVMKAGKASGEFDA-------DEAEKLTRQVIDVLSFRF 63

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +  +E +QD VE  L  + +    + Y+LYRE+   +R  +           +
Sbjct: 64  TDLTVPTVEQVQDIVEHCLAVNQYFATAKAYILYREKHKIIRENKKTFLDITSSVEE 120


>gi|269217079|ref|ZP_06160933.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
 gi|269129216|gb|EEZ60301.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
          Length = 740

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  AI  A   V         ++    +N+ +           
Sbjct: 1   MKIIKRNGSEVEFDISKIENAITAANAEVPAAQRLTDRQISYASQNVADACAEA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V +E+IQD VE  +M+    ++ R+Y++YR  +   R   +   
Sbjct: 55  -GHAVSVEEIQDLVEDEIMKLDRFEVARKYIIYRYVQGLKRQKNTTDD 101


>gi|299069356|emb|CBJ40622.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CMR15]
          Length = 683

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G QV KR+G +  FD  KI +AI  A  A        + R       L+   + +L  
Sbjct: 1   MTGTQVTKRDGSLAPFDGQKIRQAIAAAGQATNEFDTQEAQR-------LSAHVIGQLAG 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           +
Sbjct: 54  L----ACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE 108


>gi|228478027|ref|ZP_04062638.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250207|gb|EEK09460.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 734

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA  A+         +++ I   +  +   R  Q+
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPLIEAKLEGIANRIVAEINDRFTQN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|9625480|ref|NP_039714.1| predicted 76.3Kd protein [Mycobacterium phage L5]
 gi|465265|sp|Q05262|VG50_BPML5 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|579135|emb|CAA79426.1| gene 50 [Mycobacterium phage L5]
          Length = 682

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 100/546 (18%), Positives = 179/546 (32%), Gaps = 134/546 (24%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGN----DWTPVRGLGAHIHGTNGKSQGVIPF---- 427
           + D   G   AL +        G +      D + +R  GA +    G + G +PF    
Sbjct: 170 IEDSREGWAAALVDLIDTHYRPGTVHYQRVYDVSRIRPQGAKLKTFGGVASGPLPFAVML 229

Query: 428 --------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                               ++V +  A  V  GG R+ A  + +      +++F++++ 
Sbjct: 230 QKVANIFSEYAGITLDGIAAMEVDHAIAQCVVAGGVRRSARMSMMHWDDYQIDKFINIKA 289

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           +TG+        N +  + D F +   +                  YG  F +A     R
Sbjct: 290 STGEH----WTTNISVEVDDEFWRLAKEG-----------------YGS-FAVA-----R 322

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNL 584
           +    + +  R + A      +       G P +         S   +VG    V  +N 
Sbjct: 323 EDMPKQKRAHRVLKA------LSEGAVRNGEPGMW-------DSSLSNVGEPNRVVCTNP 369

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C EITL         CNLG INL A      + DY  L    R   R L      +    
Sbjct: 370 CGEITLEPWEP----CNLGHINLAAFVTPAGKTDYLDLIRAHRLMTRFLIR-ATFSEVAD 424

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            K+++    +R IG+G +G  S L L    Y+            +F+         E+A 
Sbjct: 425 PKSREVLDRNRRIGVGHLGVASYLALTGSRYSEAPG---DKRFTQFLR--------EMAA 473

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E  +    +   +         I +  + R                              
Sbjct: 474 EVDS----EAERFA----HDLRIPVPVKKR------------------------------ 495

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVN--ELKQRDLWDE 818
             IAPT T+A + GVS+ I P +   +++      + D   +        E+++      
Sbjct: 496 -TIAPTGTVAKMPGVSEGIHPIFSRYFIRRVRFNLNSDMAELRRLAAEGYEIEKDLFAPN 554

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYL 877
             +  +   D  +  +E +  D ++I  +A E+    L+   +  Q  W D A S    +
Sbjct: 555 TEVVSIPTKDTLVQAVEELGWD-EEIVESADELTLHQLLAFQALYQMCWADNAVSFTANV 613

Query: 878 DEPSGK 883
              + +
Sbjct: 614 HPDAYE 619


>gi|126653223|ref|ZP_01725344.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126590054|gb|EAZ84181.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 494

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 6/173 (3%)

Query: 312 SRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSG--TRH 365
             +E+  +    R A GLA+ E   EKR   F   Y  L S  F+ +   ++ +G  T  
Sbjct: 126 KPLEIFYEQIAKRNATGLAVVEKTPEKRQEWFEKFYEQLVSLKFIPAGRVIYGAGSETDV 185

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G +
Sbjct: 186 TFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSV 245

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            +L         V QGG R+GA    L  WH D+ EF+  +       R   +
Sbjct: 246 SWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPRILRYLIE 298



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRG 532
               N +  +   FM+ V  +A + L  P   +   +    Y  E+    +  E +    
Sbjct: 367 LTGANISVTLTKEFMEAVENDADFELRFPAVEEYSKEEMHAYNTEWHHVGDVREWEKMGY 426

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
           +I+ +R I A  LW  +      +  P I F D  N  +  +  G  V ++N C E  L 
Sbjct: 427 KIRTYRTIKAKELWNLINVCATYSAEPGIFFIDNANDMTNAKAYGQSVVATNPCGEQPLA 486

Query: 592 SSSEETAVCN 601
                 +VCN
Sbjct: 487 P----YSVCN 492


>gi|320527903|ref|ZP_08029070.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320131699|gb|EFW24262.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 647

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G   +F+  K++ AI KAF A + +         D + +L    +T   +   
Sbjct: 3   YRVKKRDGSTAAFNIKKVASAIRKAFDACDREYT-------DSVIDLIALRITSDFEPKI 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              ++ +E IQD  E  L +SG+  +++ Y+LYR++R +VR   + +  
Sbjct: 56  QNSLIDVEKIQDSAEKVLSESGYADVSKAYILYRKQRENVRNITNTTFD 104


>gi|291515766|emb|CBK64976.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Alistipes shahii WAL 8301]
          Length = 795

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F   KI RAI KAF A  G        V+ I  ++             
Sbjct: 6   ISIIKRDGKTEPFSLDKIVRAITKAFRA--GGITDEGQAVEQIASDVAAAITKA------ 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +E+IQD VE  LM+     I + Y++YRE R+  R  +S  KS
Sbjct: 58  ---EISVEEIQDMVEERLMKRN-PSIAKRYIIYREWRNVERDRRSSIKS 102


>gi|298373461|ref|ZP_06983450.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274513|gb|EFI16065.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 697

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + ++KR+G    F   KI  AI KAF++V+                 T+     +L  
Sbjct: 4   KEIYIVKRDGKSVPFSLDKIKSAIAKAFLSVDTFA--------------TDDDFVAILSR 49

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              A  + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R  +    
Sbjct: 50  IHVANGMSVEEIQNQVETALMAEKYFAVAKSYMLYRQKHTETRETRDKLN 99


>gi|163815689|ref|ZP_02207061.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
 gi|158448994|gb|EDP25989.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
          Length = 720

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   ++D SKI  AI KA   VE        +++DI+ ++  +   R+L    
Sbjct: 13  MLVIKRDGRAVNYDRSKIILAIQKANSEVEPCEKISDEKIEDIVGSIEAKNRKRML---- 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  +M  G   + + Y++YR  R  +R A +   S
Sbjct: 69  ------VEDIQDIIEQGIMADGKFVLAKTYIIYRYSRELIRKANTTDDS 111


>gi|295084957|emb|CBK66480.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 804

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++      + 
Sbjct: 15  IIKRDGKREDFSISKIKNAISKAFSASGIQDE------QQLVADITMNVISQF-----AT 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 64  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 109


>gi|312142435|ref|YP_003993881.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
 gi|311903086|gb|ADQ13527.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
          Length = 798

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + VIKR+G    +   KI  AI +A +        +        + +  +    L + 
Sbjct: 4   SDMTVIKRDGREVEYKREKIKTAIHRAMIESGEDAGEKD------AEKVAVEVENSLKKE 57

Query: 87  NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             S   +  +E+IQD VE  LM+S +    + Y+LYR +R   R  +     +
Sbjct: 58  FYSKDKVPKVEEIQDLVEEELMKSAYVTTAKTYILYRSKRQQSRLQRKSKDKE 110



 Score = 45.5 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 69/501 (13%), Positives = 152/501 (30%), Gaps = 100/501 (19%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            ++  VR  G  +    G + G     ++       + +                 D E 
Sbjct: 321 FNYDSVRPKGEKLKTFGGTASGHQSLKRMFTKIDKLLREK---------------PDRE- 364

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKR-VTQNAGWTLFSPDEV------SDLHDLY 514
              +        +    M+ AN I +  +   V +++   LF+ ++       S+L+   
Sbjct: 365 ---MDSIKRVKLKSIDAMDIANIIAENVVSGGVRRSSQICLFAKEDKEIAQAKSNLYIKE 421

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             E+ I  E   RQ     I    K  +       +  +  +G P        + R    
Sbjct: 422 DDEWVINPEISHRQMSNNSIFYEDK-PSREQLSWHVKQMRFSGEPGFINAVEASRRREN- 479

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLD 633
                   N C EI L+S      VCNL S+N++A        D + +    + + R   
Sbjct: 480 ----FKGVNPCAEILLDS----KGVCNLTSLNVMAFVDEEGNLDKEAMFEAQKLSARSGY 531

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +  I    + +  + N   R IG  + G+Q   +   +     EA     + ++ +   
Sbjct: 532 RMSLIEFE-LPEWDQINKRDRLIGNSVTGWQDMKNAAGLS-EEEEA-----QLLKELREV 584

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           +  A+ E+A++ G                 D++  L                        
Sbjct: 585 SHKAAKEIAEDVG-----------------DNVPKL------------------------ 603

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
                       + P  T   +  VS  +  S+   Y++          +  L    ++ 
Sbjct: 604 ---------MTTVKPEGTQTQMPTVSSGLHYSHSAYYIRRVR----ISASDPLARVCEEL 650

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           D      +        ++     +     ++ A    I  +   +   +   ++D   S+
Sbjct: 651 DYPIHPEVGQNPDDPETLVIEFPVKAPEGEVKADIDAITQLETYKMFMKN--YVDHNASI 708

Query: 874 NLYLDEPSGKKLDFIYRQAWL 894
            +++ +   + ++    + W 
Sbjct: 709 TVHVKDDEWEDVEEWLWENWD 729


>gi|311106099|ref|YP_003978952.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
 gi|310760788|gb|ADP16237.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
          Length = 668

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V +FD  KI++A+  A  +      + +       + LT+  +  L      
Sbjct: 9   HILKRDGRVAAFDRDKIAQAMAAAGQSTGELDLAGA-------QTLTDGVIAALA----G 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQ++VE +L+Q+GH +  R Y+++RE+ + +R+ +           +
Sbjct: 58  NPCPGVETIQNRVEEALVQAGHWRTARAYIVHREQHARLRSLRHTLVDVESAMEE 112


>gi|269469073|gb|EEZ80628.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           SUP05 cluster bacterium]
          Length = 445

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +    + VIKR+G    FD  KI  AI++A    E           +    LT Q +  L
Sbjct: 5   QANSPLSVIKRDGTTVFFDSEKIHLAILRAGQVSEEFD-------DNEAGLLTAQVLKVL 57

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
              ++S     IE IQD VE  L+ S   K  R Y+ YRE+   +R  +      A 
Sbjct: 58  --GHRSDHEPSIERIQDIVEQVLISSNFIKTARSYIAYREKHKVLREDKKTLIDVAS 112


>gi|325299812|ref|YP_004259729.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
 gi|324319365|gb|ADY37256.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
          Length = 795

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF  SKIS AI KAF A             +  + L E+   R++ H  + 
Sbjct: 8   IIKRDGKQESFSASKISNAIGKAFQATG----------LEKQEQLIEEITRRVIAH-FTH 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K 
Sbjct: 57  PTLGVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERERKTQMKH 102


>gi|322412843|gb|EFY03751.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 732

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V         +++ I + +  +   R    
Sbjct: 13  PEIKVIKRDGRLVNFDTTKIYSALLKASMKVTRMSPLIEAKLEAISERVIAEINERF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 70  ---PTNIKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 111


>gi|237714067|ref|ZP_04544548.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262407118|ref|ZP_06083667.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|294644010|ref|ZP_06721790.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298479624|ref|ZP_06997824.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
 gi|229445891|gb|EEO51682.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262355821|gb|EEZ04912.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|292640647|gb|EFF58885.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298274014|gb|EFI15575.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
          Length = 797

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSASGIQDE------QQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 102


>gi|255011119|ref|ZP_05283245.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313148930|ref|ZP_07811123.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313137697|gb|EFR55057.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
          Length = 797

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A            Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVTKAFSATGINDE------QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|323692294|ref|ZP_08106533.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503619|gb|EGB19442.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 725

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I   + E   TR      
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQVEEVCSTR------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               +++E+IQD VE  +M+    ++ R+Y+ YR  R+  R++ +       +  
Sbjct: 55  -PHAMNVEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKRSSNTTDDKILSLIE 108


>gi|225163579|ref|ZP_03725888.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
 gi|224801814|gb|EEG20101.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
          Length = 748

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 22/184 (11%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++D+     +A P+L          VQV KR+G +  FD  +I+RA+ +A  A      
Sbjct: 8   PAQDLAAFLRNAAPTL---------PVQVRKRDGRLVPFDAKRITRALSRAGTATGEFDD 58

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + + R+   + NL   TV              +E +QD +E  L+ S   K  R  ++YR
Sbjct: 59  AMAHRLTLRVINLLLATVA--------DTTPTVEQVQDVIEEFLLDSPFRKTARALIVYR 110

Query: 123 EERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA---CSGLQDVS 177
           ++   +R   A+           +L   + + + +S++ + L   +  A      L  + 
Sbjct: 111 DQHKRLREVTARQDVALIDGYLKQLDWQVRENSNMSYSLQGLNNYLSSAVSKTYWLNAIY 170

Query: 178 SKIV 181
              +
Sbjct: 171 PPEI 174


>gi|323487570|ref|ZP_08092861.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
 gi|323399108|gb|EGA91515.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
          Length = 725

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I   + E   TR      
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQVEEVCSTR------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               +++E+IQD VE  +M+    ++ R+Y+ YR  R+  R++ +       +  
Sbjct: 55  -PHAMNVEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKRSSNTTDDKILSLIE 108


>gi|329115737|ref|ZP_08244454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
 gi|326906142|gb|EGE53056.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
          Length = 729

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   ++VIKR+G + +FD +KI  A++KA + V         +++ I + +  +   R  
Sbjct: 8   EQPDIRVIKRDGRLVNFDTTKIYSALLKASVEVTKMSPVLEAKLEAISERVIAEIRDRFP 67

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            +      + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 68  NN------IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQ 108


>gi|322785763|gb|EFZ12389.1| hypothetical protein SINV_05398 [Solenopsis invicta]
          Length = 209

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 56/253 (22%)

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN----TANWIPDLFMKRVTQNAGWT 500
            G++   L+T    +E F  L  + G                 W PDLFMKRV  +    
Sbjct: 3   GGSIDVILDT----LERFAILCHHNGKVGFNARSSFESMCYGLWTPDLFMKRVYDDIS-N 57

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK-MLTMLFETGHP 559
           L    E   L ++         + YE++       +  K  A  L R  ++ + FET  P
Sbjct: 58  LICSHECPGLIEI--------IDIYEKKGQ----VLKDKFKARELIRLLIIQIQFETEVP 105

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFD 617
           +I FKD  N +S  Q++G +  S+ CTE+   SSS E A+CN+ SI  N+  +     FD
Sbjct: 106 YIVFKDYYNRKSNYQNLGTIECSSFCTEVVQYSSSGEVAMCNVASITVNMFMNSTKRIFD 165

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL                                   G+ +     AL L+   + S 
Sbjct: 166 FYKLKFI--------------------------------GVSVQELADALILMRYVFESN 193

Query: 678 EAVEIADESMEFI 690
           +A E   +  E I
Sbjct: 194 KAKEFNVQIFEII 206


>gi|319941888|ref|ZP_08016209.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804541|gb|EFW01411.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 679

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + +IKR+G V  FD  KI +A++KA +A +   A+   R ++I++      + RL++H 
Sbjct: 6   PLHLIKRDGAVRDFDAEKIVQAVVKAGLATQEFDAA---RAREIVQTY---VLPRLMKH- 58

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +A    IE +QD VE  L ++G     R Y++YRE R+  R A+ 
Sbjct: 59  DAARTPTIEWVQDAVEHGLYEAGCFPTLRAYIVYRESRAKARDAKK 104


>gi|293400325|ref|ZP_06644471.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306725|gb|EFE47968.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 720

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    FD SKI  A+ KA  +V         ++  I+ N+T            
Sbjct: 1   MNIIKRSGKEVVFDASKIEDAVCKANQSVTHIYQMSGEQIAQIVTNVTAY-------CQH 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD+VE  +M+    K+   Y+ YR +R  VR + S  K    +  
Sbjct: 54  LNRSATVEEIQDKVEEEIMKQSAFKVANNYITYRYKRELVRKSNSTDKQILSLLE 108


>gi|262283635|ref|ZP_06061400.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
 gi|262260692|gb|EEY79393.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
          Length = 734

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V         +++ I + +  +   R  Q
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEVTPMSPLLEAKLEGITEKIVAEITHRFSQ 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R   R+ 
Sbjct: 72  D------VKIYEIQNIVEHELLNANEYAIAKAYISYRTQRDFDRSQ 111


>gi|157151175|ref|YP_001451281.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157075969|gb|ABV10652.1| ribonucleoside-triphosphate reductase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 734

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V         +++ I + +  +   R  Q
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEVTPMSPLLEAKLEGITEKIVAEITHRFSQ 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R   R+ 
Sbjct: 72  D------VKIYEIQNIVEHELLNANEYAIAKAYISYRTQRDFDRSQ 111


>gi|302534583|ref|ZP_07286925.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
 gi|302443478|gb|EFL15294.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
          Length = 660

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 112/631 (17%), Positives = 193/631 (30%), Gaps = 162/631 (25%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLG-----NDWTPVRGLGAHIHGTNGKSQGVIPF-- 427
            V D   G   A+ +        G +       D + VRG GA +    G + G  PF  
Sbjct: 137 EVEDSREGWASAMTDLIDTFMTDGEVKHSHRVYDVSRVRGKGARLKTFGGVASGPAPFGR 196

Query: 428 -------------------------------LKVANDTAVAVNQGGKRKGAVCAYLETWH 456
                                          +++ +  A  V  GG R+ A  A      
Sbjct: 197 MMQEIGRILSGAFRSHERGLRARGHLLPTESMEIDHAIAECVVSGGNRRSARMAICAWND 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
             +EEFL  +++ G    R    N +  I   F+  ++                HD +G 
Sbjct: 257 PYIEEFLACKQDPG----RHWTTNISVEIDQDFIDYLSNGK-------------HDDFGP 299

Query: 517 E-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
              E+AY             V RK+         +  +   G P        +  S    
Sbjct: 300 GGAEMAY------------MVHRKV---------VEGMLANGEPGYWN----STYSNAGE 334

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLD 633
           VG V ++N C EI L +       CNLG INL A   +    FD   L        R L 
Sbjct: 335 VGEVIATNPCGEIALEAWEN----CNLGHINLDAFVLDGHEAFDESGLKRAHELMTRFLI 390

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
                + +  E+A++    +R IG+G +G Q+ L    + Y+   A       +  +   
Sbjct: 391 RATYGDVNDAEQAERLA-ANRRIGVGHLGVQAFLAKQGVRYSEAPAHTRFRLLLGRMKRV 449

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              A+ + A E       K +                                       
Sbjct: 450 VRQAARDYAFELRIPEPVKCT--------------------------------------- 470

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
                       +APT TIA + G ++ I P Y   +++           +  V   + +
Sbjct: 471 -----------TVAPTGTIAKLPGTTEGIHPIYARTFLRRVRFSMADPDQAAKVAAFEAQ 519

Query: 814 DLWDEAMISDLKYHDGSIG--NIERIPDDLK------KIHATAFEIDPMWLIESASRRQ- 864
               E    D   +   +    +ER+ ++++       +  +A E+    L+   +  Q 
Sbjct: 520 GYPVEVCQYDPSGNTFIVVFPTLERLVEEVEARGYPADLVESADELSLNQLLAFQAMYQT 579

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ D A S    + E           +AWL  LK T  +   +        +   + + +
Sbjct: 580 EYADNAVSFTANVPEGLDLDETADVIEAWLPLLKGTTVMVDGTRPQAPYERISRAEFEKH 639

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
              + +              + D EC    C
Sbjct: 640 ETYIVED-------------SIDEECSTGAC 657


>gi|189485584|ref|YP_001956525.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287543|dbj|BAG14064.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 708

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG   +F+  KIS AI KA       G   + ++     +L   T+          
Sbjct: 10  IVKRNGTKEAFNSKKISAAIAKAGETTGEFGQDTANKLAIKALSLLLDTIE--------D 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKIM 148
               +E +QD VE  L+ S + K  R Y+LYR++ S +R   S    D       K+   
Sbjct: 62  RKPTVEKVQDAVEEVLLYSKYKKTARAYILYRDQHSKIREIYSAFNIDLVDQYLEKIDWQ 121

Query: 149 MDDGTLISFNSKRLEMIVE 167
           +++ + +S++ + L   + 
Sbjct: 122 VNENSNMSYSLQGLNNYIS 140


>gi|7532417|emb|CAB86984.1| aerobic ribonucleotide reductase class Ib [Acinetobacter
           calcoaceticus]
          Length = 174

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +N    LFSP +V     +YGK F +I+  ++  +         +KI+A   ++ +  
Sbjct: 3   AKRNEDMYLFSPYDV---ERVYGKPFGDISVSDHYAEMVEDPRITKKKINARHFFQTVAE 59

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAV 599
           + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI   +S                  
Sbjct: 60  LQFESGYPYIMFEDTVNNANPVK-TGRINMSNLCSEILQVNSPSSFNDDLSYEEMGSDIS 118

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D      T+  A+R L  V D     ++   +  N    AIGL
Sbjct: 119 CNLGSMNIAL-----AMDSPDFGGTVEAAIRGLTAVADKTAIDSVPSIRHGNDQSHAIGL 173

Query: 659 G 659
           G
Sbjct: 174 G 174


>gi|53714977|ref|YP_100969.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60682944|ref|YP_213088.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis NCTC 9343]
 gi|253566075|ref|ZP_04843529.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|265766824|ref|ZP_06094653.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|52217842|dbj|BAD50435.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60494378|emb|CAH09174.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis NCTC 9343]
 gi|251945179|gb|EES85617.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|263253201|gb|EEZ24677.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|301164410|emb|CBW23968.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis 638R]
          Length = 797

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A            Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVSKAFSATGINDE------QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDKKTQMKH 102


>gi|213024644|ref|ZP_03339091.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 162

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 38/175 (21%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K++  G    V      
Sbjct: 3   LRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-- 60

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
              +       ++ ++  +DG +                                QK+ID
Sbjct: 61  ---EHLKDAYELLWEMPNNDGYLQ--------------------------LVGIMQKFID 91

Query: 869 QAQSLNLYLDE---PSGK----KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           Q+ S N   D    PSGK    +L      A+  G+KT YY  +R      +  L
Sbjct: 92  QSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDL 146


>gi|258646237|ref|ZP_05733706.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
 gi|260403624|gb|EEW97171.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
          Length = 735

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             VIKRNG   +FD +KI  AI KA   V G     + +++ I  N+ ++          
Sbjct: 13  TNVIKRNGQEVTFDITKIINAIGKANHEVAGIHQMNNFQIRAIADNIAKKISNY------ 66

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                ++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +  
Sbjct: 67  -PHAANVEDIQDMVETGIMEMRGYEVAQKYVRYRYKREISRKSNTTDDGILSLIE 120


>gi|134094879|ref|YP_001099954.1| anaerobic ribonucleoside triphosphate reductase [Herminiimonas
           arsenicoxydans]
 gi|133738782|emb|CAL61829.1| anaerobic class III ribonucleotide reductase NrdD [Herminiimonas
           arsenicoxydans]
          Length = 673

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             V+KR+G +  FD  KI  A+++A +A     A        + KNL+ +     +    
Sbjct: 10  THVVKRDGSIKPFDAGKIESALLRAGLASGEFDAG-------VAKNLSARVALARIS-FH 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              + HIE IQD VE  L  +G+ K  R Y +YRE+   +R  +           +
Sbjct: 62  EQDVPHIEQIQDAVETVLFDTGYRKTLRAYTVYREQHQKLRRDRKTLVDVESSMNE 117


>gi|333029184|ref|ZP_08457245.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
 gi|332739781|gb|EGJ70263.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
          Length = 794

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  A+ KAF A    G S+      I   +T + V ++       
Sbjct: 8   IIKRDGKKEVFSPLKIQNALSKAFTATGINGDSQ------ITSEITNRVVDKI-----QL 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E +QD VE  LM+  +  + ++Y++YR+ R+  R  ++  K 
Sbjct: 57  DTISVEQVQDLVENELMKV-YPDVAKKYIIYRDWRTTEREKKTKMKH 102


>gi|3789889|gb|AAC67536.1| UL45 protein [Macacine herpesvirus 3]
          Length = 195

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 21/199 (10%)

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV----RVLDNVIDINCHTIE 644
            L + +++  +C     N++       FD   L + +  AV      LD +I      +E
Sbjct: 4   CLFTRTDDDVLCRD---NVVLGNTRRYFDMQVLRTLVTEAVVWGNARLDALIRSGDWPLE 60

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            A       R++ +G+ G  + L  L   Y    + ++ +   E + + A+  SV+L + 
Sbjct: 61  SA---ICKMRSLNIGVTGLHTVLMRLGFTY--FASWDLIERIFENMYYAALRTSVDLCKS 115

Query: 705 R-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                  F  +++ +G F  +                     W+ L+  ++  G+RN+  
Sbjct: 116 GLPPCEWFDRTIYKEGKFIFELYRKPHLSLPVA--------QWETLRTEMQEYGVRNAQL 167

Query: 764 MAIAPTATIANICGVSQSI 782
           ++IA     A +  V+ SI
Sbjct: 168 LSIAADEETAFLWNVTPSI 186


>gi|17549184|ref|NP_522524.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           solanacearum GMI1000]
 gi|17431436|emb|CAD18114.1| putative ribonucleotide reductase oxidoreductase protein [Ralstonia
           solanacearum GMI1000]
          Length = 683

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV KR+G +  FD  KI +AI  A  A        + R       L+   + +L  
Sbjct: 1   MTCTQVTKRDGSLAPFDGQKIRQAIAAAGRATNEFDTQEAQR-------LSAHVIGQLAG 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           +
Sbjct: 54  L----ACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE 108


>gi|261878746|ref|ZP_06005173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
 gi|270334755|gb|EFA45541.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
          Length = 737

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +          + +I  +T+          K  
Sbjct: 5   VVKRDGRIVGFNDQKIQAAIRKAMLHTDKGED------EQLIVRITDHIA------MKGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++  
Sbjct: 53  PQMSVEEIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRD 97


>gi|160881178|ref|YP_001560146.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160429844|gb|ABX43407.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 708

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G VT +D +KI  AI KA   V+ K      +++ II  +           + 
Sbjct: 1   MKVVKRDGRVTDYDRNKILVAIRKANDEVDPKEKITEDKIEAIILGI----------EHL 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +++E+IQD +E  LM      + + Y++YR  R  VR A +   +D  I   ++  
Sbjct: 51  KKDTMYVEEIQDMIEQKLMAERKFVLAKTYIIYRFRRELVRKANT---TDESIMSLIRHS 107

Query: 149 MDD 151
            +D
Sbjct: 108 NED 110


>gi|288916312|ref|ZP_06410691.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
 gi|288352291|gb|EFC86489.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
          Length = 701

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 161/550 (29%), Gaps = 144/550 (26%)

Query: 374 TTVPDDLYGIFGALQENAMLA-----KYSGGLG---NDWTPVRGLGAHIHGTNGKSQGVI 425
             V D   G   AL      A        G  G    D + +R  GA I    G + G  
Sbjct: 171 VDVEDSREGWADALALVLRRAELNHHLAGGQAGPIVVDVSRIRFRGAPIKAFGGTASGPA 230

Query: 426 PF---------------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           P                            +++    A  V  G  R+ A  + +      
Sbjct: 231 PLARMLLRTAEILSGCAVEGFGAIEPLDAMEIDQAIAECVVSGNVRRSARMSIVHWQDPH 290

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + EF+  + + G         N +  I D F+  V  +     F P              
Sbjct: 291 IREFIACKSDPGAH----WTTNISVEIDDDFVAAVNDD-----FHP-------------- 327

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              R+I A+A+  +++T +   G P +      +  S    VG 
Sbjct: 328 -------------------RRIEAMAVLEQVVTGMLTNGEPGLWN----SSLSAHGEVGE 364

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVID 637
           V ++N C EI L +       CNLG +NL A      F D+       R   R L     
Sbjct: 365 VIATNPCGEIALEAWEN----CNLGHVNLDAFVDKQGFYDHAACLEAHRLMTRFLIRATF 420

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +  +  +A+     +R IG+G  G Q  L    I                         
Sbjct: 421 GDITSKAQAEVVA-RNRRIGVGHFGAQGWLVKRGIR------------------------ 455

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                             + +      +   L  ++D +            + + VK   
Sbjct: 456 ------------------YSKSWQDYPTRHFLRAMQDTVRAEAREYAFALRIPEPVK--- 494

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
                C  +APT T+A + G S+   P Y   +V+    G      +  V  L       
Sbjct: 495 -----CTTVAPTGTVAKLPGRSEGWHPIYAREFVRRIRYGLDDPREAAEVEALHDAGHTV 549

Query: 818 EAMISDLKYHDGSIGNIERIPDDL------KKIHATAFEIDPMWLIESASRRQ-KWIDQA 870
           E  I   +    SI   + +  ++        I   A EI    ++   +  Q  + D A
Sbjct: 550 EPCIYSPRTLVVSIPTRDPLVAEVIAAGGDPSIVEAANEISLHDMLSVQAMVQECFADNA 609

Query: 871 QSLNLYLDEP 880
            S  + ++  
Sbjct: 610 VSFTVNVEPD 619


>gi|288925296|ref|ZP_06419231.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
 gi|288338061|gb|EFC76412.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
          Length = 741

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +              + L  +    +    KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTDKGED----------EALIVKITDHIAFRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++ +         + I  +
Sbjct: 55  M--SVEDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKTRNV----FLDIVNIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|223983088|ref|ZP_03633286.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
 gi|223964944|gb|EEF69258.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
          Length = 379

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 6/190 (3%)

Query: 311 GSRIE-MPQAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
              +E   +    RV   LA  ET+   +EK A  F   L   + + +   LF +G+   
Sbjct: 120 DKPMEIYYEQIARRVGTALAEPETDVAQREKYAGLFTEQLKKLNVIPAGRVLFGAGSGTQ 179

Query: 366 PQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +CF+   V D   GI    +E   +    GG+G + + +R   A   G  G+S G 
Sbjct: 180 VTYFNCFVMPFVEDSRGGIAEHRKEVMEIMSRGGGVGTNGSTLRPKHAPAKGVGGRSSGA 239

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           + +L    +    V QGG R+GA    L  WH D+ EF+  +       +   + N    
Sbjct: 240 VSWLNDIANLTNLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRVLKWLSENNKDEQ 299

Query: 485 IPDLFMKRVT 494
           + +L  +++ 
Sbjct: 300 VRELAQRKLK 309


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   + KR+    SF   KI+ A++KA +AV       + +V   + ++  +      +
Sbjct: 1   MEITHIKKRDYSTKSFHLDKITAAVLKAMLAVNTGSEKEAEKVAKSVYDVLLER-----K 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +N  + I  IE++QD VE  LM+ G  ++ + Y+LYR +R+  R 
Sbjct: 56  NNDKSYIPTIEEVQDIVETKLMECGFPEVAKAYILYRNKRTQERK 100


>gi|212690794|ref|ZP_03298922.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
 gi|212666671|gb|EEB27243.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
          Length = 758

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A       +      +I  +T + ++  +      
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNEDK------LIAEITMRVISNFVS----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTISVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDRKTQMKH 102


>gi|237723711|ref|ZP_04554192.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D4]
 gi|265756835|ref|ZP_06090823.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|229437922|gb|EEO47999.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides dorei
           5_1_36/D4]
 gi|263233621|gb|EEZ19241.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
          Length = 758

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A       +      +I  +T + ++  +      
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNEDK------LIAEITMRVISNFVS----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTISVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDRKTQMKH 102


>gi|160895081|ref|ZP_02075855.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
 gi|156863512|gb|EDO56943.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
          Length = 708

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   S+D SKI  AI KA   VE        ++++II  +  +   R+L    
Sbjct: 1   MQVIKRDGRAVSYDRSKIIVAIQKANAEVEDCEKISEEKIEEIIDGIEAKNRKRML---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S
Sbjct: 57  ------VEDIQDIIEQKLMAEGKFVLAKTYIIYRYSRELIRKANTTDDS 99


>gi|150004213|ref|YP_001298957.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932637|gb|ABR39335.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
          Length = 758

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A       +      +I  +T + ++  +      
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNEDK------LIAEITMRVISNFVS----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTISVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDRKTQMKH 102


>gi|315607270|ref|ZP_07882270.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
 gi|315250973|gb|EFU30962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
          Length = 741

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +              + L  +    +    KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTDKGED----------EALIVKITDHIAFRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  M--SVEDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKTRDV----FLDIVNIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|51243916|ref|YP_063800.1| anaerobic ribonucleoside triphosphate reductase [Desulfotalea
           psychrophila LSv54]
 gi|50874953|emb|CAG34793.1| related to anaerobic ribonucleoside-triphosphate reductase
           [Desulfotalea psychrophila LSv54]
          Length = 705

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             V KR G +  F+ +KI+ A+ KA +A E      + R+   +  L  + +        
Sbjct: 14  THVKKRTGNIVPFESAKITAALEKAGLATEEFAQDEARRLTIRVLTLAYEVL-------- 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA--PKLK 146
                 +E +QD VE  L+ S H K  + Y+LYR+++   R     +          +L 
Sbjct: 66  -PETPEVEQLQDLVEEVLLASPHRKTAKSYILYRDQQKRRRQMIEQADIQLIDNYLERLD 124

Query: 147 IMMDDGTLISFNSKRLEMIV 166
             +++ + ++++ + L   +
Sbjct: 125 WQVNENSNMAYSLQGLNNYI 144


>gi|310780509|ref|YP_003968841.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309749832|gb|ADO84493.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 783

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  AI KA +A             DI K  +    +++L  + 
Sbjct: 1   MFVIKRDGTKVPFNKEKIINAIEKAGIAAGK----------DIPKEFSVTAASKILNLSS 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 +E IQD VE  LMQ  + ++ ++Y+LYR+ R+  R  ++H K
Sbjct: 51  DTE---VESIQDMVEKELMQE-YPEVAKKYILYRDMRNVERHKRTHIK 94


>gi|281357522|ref|ZP_06244010.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281316125|gb|EFB00151.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 720

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G    F  +KI  A+ KA   VE K A  + +++ I + ++            
Sbjct: 1   MKIVKRSGAEEEFSVAKILAAVTKANQTVEFKNALTAQQIEAIGEYVSG-------ICKA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +E+IQD VE  +MQ G  ++ ++Y+ YR  R+ +R A +       +  
Sbjct: 54  LDRALSVEEIQDIVETRIMQEGAFEVAKKYITYRYVRNLIRQANTTDNQILSLIE 108


>gi|302336271|ref|YP_003801478.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
 gi|301320111|gb|ADK68598.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
          Length = 740

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  AI  A   V          V+    N+ +           
Sbjct: 1   MKIIKRNGSEVQFDLEKIVNAINAANAEVTADERLTEREVRFAALNVED-------ACKA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   V +E+IQD VE  +M      + R+Y++YR  ++  R   +       +   
Sbjct: 54  AGHTVTVEEIQDLVEDQIMALDRFAVARKYIIYRYLQNQKRHKNTTDDKILSLIES 109


>gi|254884769|ref|ZP_05257479.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294774982|ref|ZP_06740512.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|319644168|ref|ZP_07998693.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
 gi|254837562|gb|EET17871.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294451191|gb|EFG19661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|317384290|gb|EFV65261.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
          Length = 758

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A       +      +I  +T + ++  +      
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNEDK------LIAEITMRVISNFVS----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTISVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDRKTQMKH 102


>gi|237708180|ref|ZP_04538661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
 gi|229457733|gb|EEO63454.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
          Length = 758

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A       +      +I  +T + ++  +      
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNEDK------LIAEITMRVISNFVS----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTISVEEIQDLVEKELMKVR-PEVAKKYIIYREWRNTERDRKTQMKH 102


>gi|167945438|ref|ZP_02532512.1| ribonucleotide-diphosphate reductase subunit alpha [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 93

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 1/86 (1%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
             Y++  VK  LL   +  +DL  + + +K ERD  F YLGLQ LYDRYF+H   G+R E
Sbjct: 6   KAYVKRAVKLELLDSRLQQYDLQRITDAIKPERDLQFNYLGLQTLYDRYFIHTEEGTRFE 65

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE 341
           +PQAFFMRVAMGLA+ E ++E RA+E
Sbjct: 66  LPQAFFMRVAMGLAINEIDREGRAIE 91


>gi|332881385|ref|ZP_08449035.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680761|gb|EGJ53708.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 737

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  E      +   +++I  + E    R        
Sbjct: 5   VVKRDGRIVGFNARKIGDAVRKAMVHTE------AGENEELIHLICEHVANR------GK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           + + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  VQMTVEEIQDAVEVELMKSRRKDVAQKYIAYRNQRSIARKAKTRDM----FLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|282858815|ref|ZP_06267960.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
 gi|282588384|gb|EFB93544.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
          Length = 702

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++   + KR+G    F   KI  AI+K F +V                     TV+++L
Sbjct: 2   AMQNFTITKRDGSKELFSLDKIMGAILKGFESVNEPTDLT--------------TVSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            + K    + +E+IQ+QVE SLM+ G + + + +++YR + S+ R  Q   K
Sbjct: 48  SNIKIHDDITVEEIQNQVEESLMKEGFYHVAKSFIVYRHQHSEDRETQEKIK 99


>gi|224025811|ref|ZP_03644177.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
 gi|224019047|gb|EEF77045.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
          Length = 795

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F  +KI+ AI KAF+A   +        + +I  +T++ +    +     
Sbjct: 8   IIKRDGKRENFSAAKITNAIGKAFVATGLEHQ------EAMINEITQRVIEHFAE----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K 
Sbjct: 57  PTITVEAIQDLVETELMKV-QPEVAKKYIIYRQWRNTERDRKTQIKH 102


>gi|313158565|gb|EFR57959.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes sp.
           HGB5]
          Length = 741

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G   +F   KI RA+ KAF++V                  T+  +T +L 
Sbjct: 3   ISELYIVKRDGKRKAFSVEKIKRAVRKAFLSVG--------------SYATDDDITSILS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +  + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R  +   +
Sbjct: 49  RVHVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHTEEREDREKLE 99


>gi|55821930|ref|YP_140372.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55823849|ref|YP_142290.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
 gi|55737915|gb|AAV61557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55739834|gb|AAV63475.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
          Length = 734

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA   +         ++++I   +  +   R   +
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEEIANRVVAEINDRFSHN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|89899182|ref|YP_521653.1| anaerobic ribonucleoside triphosphate reductase [Rhodoferax
           ferrireducens T118]
 gi|89343919|gb|ABD68122.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodoferax
           ferrireducens T118]
          Length = 675

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKR+GG+  FD +KI+ A+ +A         + + R+   +       + ++  H   
Sbjct: 11  HIIKRDGGIKPFDGAKIAHALARAAQVSGEFDDTEAQRLTHYL------VLPKIKVHG-- 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +  HIE IQD VE +L  +G+ K  R Y++YRE+   +R+ +           +
Sbjct: 63  QVTPHIEQIQDAVESALFDAGYPKTLRAYIVYREQHHKLRSDRKTLVDVESSMNE 117


>gi|328464293|gb|EGF35723.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus MTCC 5463]
          Length = 217

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 9/191 (4%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHG 416
            +R LGA I  
Sbjct: 207 NLRELGAPIKK 217


>gi|229825027|ref|ZP_04451096.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
 gi|229790774|gb|EEP26888.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
          Length = 737

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V++IKR+G  + FD +KI  A+ KA   V       S   ++ +  +TE         N
Sbjct: 3   AVKIIKRSGQESIFDSNKIKLAVQKANDEVVADDLKLS---EEEVLKITENVTKVCSSMN 59

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   + +E+IQD VE  LM++G   + R+Y+ YR +R+ VR + +       +  
Sbjct: 60  RA---LSVEEIQDLVEDELMKTGKTHVARKYITYRYKRALVRQSNTTDDQILSLIE 112


>gi|187926824|ref|YP_001893169.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|241665153|ref|YP_002983512.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|187728578|gb|ACD29742.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|240867180|gb|ACS64840.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 683

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV KR+G + +FD  KI RA+  A  A        + R       L+   V ++  
Sbjct: 1   MACTQVTKRDGSLAAFDGQKIHRAMAAAGQATGEFDTQEAQR-------LSLYVVDQVSA 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           +
Sbjct: 54  L----DCPGIEAIQNHVEETLVDAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE 108


>gi|294808479|ref|ZP_06767230.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444306|gb|EFG13022.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 307

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSASGIQDE------QQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVR-PEVAKKYIIYREWRNTERDKKTQMKQ 102


>gi|300725847|ref|ZP_07059313.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
 gi|299776894|gb|EFI73438.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
          Length = 739

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+   T+        
Sbjct: 5   VVKRDGRIVGFNDVKIKSAIRKAMLVTDKGEDDV------LIQKITDHIATK------GK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  SQMSVEAIQDAVEVELMKSARKDVAQKYIAYRNQRSIARKAKTRDV----FMEIVNIQKN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|322515844|ref|ZP_08068788.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
 gi|322125730|gb|EFX97052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
          Length = 734

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA  A+         +++ I   +  +   R   +
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPIIETKLEGIATRIVAEINDRFSHN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|227871727|ref|ZP_03990136.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
 gi|227842436|gb|EEJ52657.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
          Length = 738

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             VIKRNG    FD  KI  A+ KA   V         ++Q   + + ++          
Sbjct: 16  TNVIKRNGKEVKFDIYKIIHAMEKANKEVAPVYQMNEYQIQAAAETVAKKIQA------- 68

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           S+  V++EDIQD VE ++M+   +++ ++YV YR +R   R A S  +    +  +  
Sbjct: 69  SSHAVNVEDIQDMVETAIMEMRAYEVAQKYVRYRYKREMARKANSTDEDILALIDQAN 126


>gi|281422174|ref|ZP_06253173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
 gi|281403679|gb|EFB34359.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
          Length = 739

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +    +           L EQ    +    KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMLHTDKGEDTT----------LIEQITDHISYRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +   +E IQD +E  LM+S    + ++Y+ YR +R+  R A++  
Sbjct: 55  M--SVEAIQDAIELELMKSARKDVAQKYIAYRNQRNIARKAKTRD 97


>gi|303236548|ref|ZP_07323131.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
 gi|302483254|gb|EFL46266.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
          Length = 699

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KR+G    F   KI  AI+KAF +V                      V+++L 
Sbjct: 1   MKNFTITKRDGSKDRFSLDKIMNAIIKAFDSVNEPTDLA--------------MVSKVLS 46

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +      + +EDIQ+QVE +LM+ G + + + +++YR++ ++ R      +
Sbjct: 47  NIDIHDDIKVEDIQNQVEVALMKEGFYNVAKSFIVYRQQHTEDREVLEKMR 97


>gi|269123987|ref|YP_003306564.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315313|gb|ACZ01687.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
          Length = 704

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 12/109 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G    +D +KI  AI KA   VE K            + +  + +  ++QH +
Sbjct: 1   MNILKRDGREEKYDSNKIRDAINKANETVELK------------ERICNKKIEEIIQHIE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +  I  +E+IQD +E SL+  G +K+ + Y++YR  RS VR A +  +S
Sbjct: 49  NEKISTVEEIQDFIEKSLVSEGLYKLAKNYIVYRYTRSLVRKANTTDES 97


>gi|7532463|emb|CAB86985.1| aerobic ribonucleotide reductase class Ib [Allochromatium vinosum]
          Length = 173

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 22/180 (12%)

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             ++    LFSP +V  ++     E  ++ E Y    D   I+  R I+A A ++ +  +
Sbjct: 3   ARRSEDMYLFSPHDVGRVYGQPFSEISVS-EKYAEMVDDRRIRKSR-INARAFFQTLAEI 60

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVC 600
            FE+G+P+I F+D     +     G +  SNLC+EI               S       C
Sbjct: 61  QFESGYPYILFEDAATRAN--PAGGRISMSNLCSEILQTNEASLYQEDLSYSRLGTDISC 118

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+ A       D     +++  A+R L  V        +   ++ N    A+GLG
Sbjct: 119 NLGSLNVAA-----VMDGPDFGASVEAAIRALTAVSNMSAIDCVPSIRRGNDEAHAVGLG 173


>gi|323345594|ref|ZP_08085817.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
 gi|323093708|gb|EFZ36286.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
          Length = 710

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +I+   + KR+G    F   KI  AI+KAF +V       S              +++LL
Sbjct: 2   EIRDFVITKRDGSKDRFSLDKIMNAIIKAFNSVNEPINLGS--------------ISKLL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            H      + +EDIQ+QVE +LM+ G++ + + ++LYR+  ++ R 
Sbjct: 48  SHLAIHDDIKVEDIQNQVEEALMREGYYNVAKSFMLYRQAHTEDRE 93


>gi|282851731|ref|ZP_06261095.1| ribonucleotide reductase, all-alpha domain protein [Lactobacillus
           gasseri 224-1]
 gi|282557134|gb|EFB62732.1| ribonucleotide reductase, all-alpha domain protein [Lactobacillus
           gasseri 224-1]
          Length = 217

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 9/191 (4%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENYIEPRMKKFVSL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQVLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A+  +  L+K  GG+    T
Sbjct: 147 ISNRFQPATPTFLNAGRKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLT 206

Query: 406 PVRGLGAHIHG 416
            +R LGA I  
Sbjct: 207 NLRELGAPIKK 217


>gi|224535702|ref|ZP_03676241.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522682|gb|EEF91787.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 697

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IVKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNILSRVNIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               +EDIQ+QVE +LM   ++ + + ++LYR++  + R  +  
Sbjct: 54  DGTSVEDIQNQVEIALMAEHYYSVAKAFMLYRQKHLEDREVRDK 97


>gi|260885728|ref|ZP_05897138.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
 gi|260852077|gb|EEX71946.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
          Length = 727

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P   +   + KR+G    F   KI  AI+KAF ++               + +  Q + R
Sbjct: 25  PMCTENFIITKRDGTTERFSLDKIKSAILKAFTSLH--------------QPIDAQGLQR 70

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +++H +    + +EDIQ+QVE +LM   H K+ + ++LYR++ ++ R 
Sbjct: 71  VIEHLRFCNGMSVEDIQNQVEVALMAEKHFKVAKAFMLYRQQHTEDRD 118


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   +IKR+     F  +KIS AI+KA   V     + +  +   +     +    ++ 
Sbjct: 1   MKITHLIKRDFTTKPFQLNKISNAILKAMTTVNHGDKADADLISKNVHEALLEREETVVN 60

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                    +E++QD VE  LM+ G   + + Y+LYR E+S  R + 
Sbjct: 61  -----YTPTVEEVQDFVETKLMEGGFFDVAKAYILYRNEQSQKRKSN 102


>gi|304314792|ref|YP_003849939.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588251|gb|ADL58626.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 144

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 297 GLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHF 351
            L++L +RY L    G  +E P+  F RVA  +A  +     +  +    FY+++ +  F
Sbjct: 9   ALKVLEERYLLKNERGEVVETPEEMFRRVARAVASADEMYGFDSYETEELFYSVMRNLEF 68

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + ++PTL N+GT   QLS+CF+  V D +  IF +L+  A++ K  G L + +      G
Sbjct: 69  LPNSPTLMNAGTPINQLSACFVLPVDDSIESIFESLRNMAIIHKSGGALDSHFPDSDQGG 128

Query: 412 AHIHG 416
             +H 
Sbjct: 129 TPLHR 133


>gi|145219615|ref|YP_001130324.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205779|gb|ABP36822.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 717

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD  KI+ AI +A  AV     +++         L    + RL +     
Sbjct: 11  IIKRDGTNAPFDTEKITYAIFRALRAVGKPDRTKAA-------KLCGDVLARLHELAGEN 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E +Q+ VE +L  +G  +  + Y++YR +   +R A+ 
Sbjct: 64  Q-PTVEGVQNLVEKTLFSTGEFEAAKAYIIYRHQHRTLRDAKE 105


>gi|322390437|ref|ZP_08063958.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
 gi|321142895|gb|EFX38352.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
          Length = 743

 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V KR+G    FD  KI +A++KA   V         +++ I+  +  + + R    
Sbjct: 20  PDIFVEKRDGRRVPFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERF--- 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 77  ---PNGVKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 117



 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG-----------LQDV 176
           +    +  +    +AP + +   DG  + F+ +++   + +A              L+ +
Sbjct: 5   MFGMITLREEKLRMAPDIFVEKRDGRRVPFDVEKIYKALLKATEEVTSLTPVMEAKLEAI 64

Query: 177 SSKIVLSETYKNMYDGLSESDLET 200
             +++  E  +   +G+   +++ 
Sbjct: 65  VDRVIA-EILERFPNGVKIYEIQN 87


>gi|319945850|ref|ZP_08020100.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
 gi|319747915|gb|EFW00159.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
          Length = 736

 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  + V KR+G    FD  KI RA++KA   V G   +    ++  ++ +T++ V  +
Sbjct: 10  QSLPQLFVEKRDGRKVKFDVDKIYRALVKATEEVTGLTPA----LEAKLETVTDRIVAEI 65

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           L+       V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 66  LERFPRG--VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 110


>gi|52424688|ref|YP_087825.1| anaerobic ribonucleoside triphosphate reductase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306740|gb|AAU37240.1| NrdD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 711

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF+  +I  AI KA  AV           +     +++Q    + QHN++ 
Sbjct: 9   IIKRDGSRASFEIQRIINAIKKAAKAVGIDD-------ERFCHLVSQQVFDEIFQHNQNE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    D  
Sbjct: 62  --IDISRIQQFVENKLMASAYPQVARAYIEYRHDRDLAREKRSQLTKDIE 109


>gi|312862463|ref|ZP_07722706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
 gi|311102106|gb|EFQ60306.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
          Length = 734

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA  A+         +++ I  ++  +   R   +
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPIIETKLEGIATHILAEINDRFSHN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|330809992|ref|YP_004354454.1| ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378100|gb|AEA69450.1| Ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 671

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G V +FD  KI +A++ A  A            +   + L E  + RL    +    
Sbjct: 15  KRDGSVVAFDADKIRQALIAAGKATGE-------YAEVEAEALLEAVLARL----EGQTR 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +++E IQD+VE  LM +G     R Y++YRE+   +R  +      A    +
Sbjct: 64  LNVEQIQDRVERVLMDAGFFLSMRAYIVYREQHGRLRRDRRTLVEVATSMNE 115


>gi|301331665|gb|ADK70787.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331725|gb|ADK70826.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331785|gb|ADK70863.1| U28 [Elephant endotheliotropic herpesvirus 1B]
 gi|301331844|gb|ADK70893.1| U28 [Elephant endotheliotropic herpesvirus 1B]
          Length = 185

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT+  + +  VS++  P++ N + K     +  V N  L  E K  + +   +  ++  
Sbjct: 1   MPTSGTSQVSSVSEAFYPTFSNFHSKITTGVEVLVSNKELQREFKMYNNYLSNIDWEVT- 59

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG---K 883
              S         D   I+  AFE D   LI+  + R  ++D +QS++L++ E      +
Sbjct: 60  -KASETYFTEPEWDKLMIYKNAFEYDQEDLIDMCADRAPFVDHSQSMSLFVREEDITGCR 118

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +  + R A   GLKT  YYLR +    +     K     +  VP+  P+S T +L   S
Sbjct: 119 HIYSLIRHAHKRGLKTGMYYLRIKKQARLRDLEKKSD---VFGVPLCCPSS-TSALVKKS 174

Query: 943 SCTSDTEC 950
              SD  C
Sbjct: 175 CPESDNTC 182


>gi|11762259|gb|AAG40404.1|AF325052_1 At2g21790 [Arabidopsis thaliana]
          Length = 104

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+ 
Sbjct: 1   MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 60

Query: 918 GVDGKLNAV------PVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K           V + ++ T    +  S T+  EC  C
Sbjct: 61  TAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 102


>gi|154483115|ref|ZP_02025563.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
 gi|149735923|gb|EDM51809.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
          Length = 368

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    FD  KI  AI KA   VE        +++ + K + +Q         +S
Sbjct: 7   RVIKRNGEEVVFDVQKILNAIRKANNEVEPIHRLNEYQIEAVGKIVMDQIC-------QS 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                +EDIQD VE  +M+   +++ + YV YR +R   R A +       +  ++ 
Sbjct: 60  NHATAVEDIQDMVERGIMEMRGYEVAQIYVRYRYKRDMARKANTTDDGILALIDQIN 116


>gi|327197952|ref|YP_004306269.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
 gi|306009272|gb|ADM73667.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
          Length = 499

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 15/241 (6%)

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT--HHEMQCLYPEYFCRYIEEGVKARL 268
              P Y  +  +  + K  +  L    +        +     +Y       ++  VK + 
Sbjct: 11  SVTPEYFMLNNQLNIIKDGKIQLNADREAVHSYFIDYVNPHTVYFGDLREKLDYLVKHKY 70

Query: 269 LHESMMD---FDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHINGS--RIEMPQAFFM 322
           +   ++D   F  +       Y++ F F  ++G    Y +Y +H       +E  +    
Sbjct: 71  IKGEVLDKYTFKFIKKLFKTLYDKKFRFTTFMGAYKFYTQYAMHTTDGKSILERYED--- 127

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLY 381
           R+A    +     E+ A+   N + S  +  +TPT  N+G        SCFL  + D++ 
Sbjct: 128 RIAFNALVMADGDEQLALNIANEMISQTYQPATPTFSNAGKLRGGNAVSCFLLNIEDNMT 187

Query: 382 GIFGALQENAMLAKYSGGLG---NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            I  ++     L+K  GG+          R     +  T+G+  G +  +    +     
Sbjct: 188 SIGRSVNSVLQLSKMGGGVAGTTVALYLARAGFEPVLLTDGEIGGNLNSIDTIQNYVGIY 247

Query: 439 N 439
           N
Sbjct: 248 N 248


>gi|116628629|ref|YP_821248.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMD-9]
 gi|116101906|gb|ABJ67052.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMD-9]
          Length = 734

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA   +         +++ I   +  +   R   +
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAEINDRFSHN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|312279281|gb|ADQ63938.1| Ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus ND03]
          Length = 734

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA   +         +++ I   +  +   R   +
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAEINDRFSHN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQ 111


>gi|266625307|ref|ZP_06118242.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862793|gb|EFC95091.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 424

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G + ++D  KI RAI KA   V+    +    +  I+ ++  +          
Sbjct: 2   IKVQKRDGRIVNYDREKIVRAIQKANAEVDAAERAGEALIDGILDDVEREC--------- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
              +VH+E IQD +E  L++   + ++++Y++YR +R+ +R A +  +S
Sbjct: 53  -EDVVHVESIQDMIESRLVKQNKYTLSKKYMIYRYQRALLRKANTTDES 100


>gi|229816394|ref|ZP_04446699.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
 gi|229808043|gb|EEP43840.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
          Length = 740

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A   V+        +V    +N+ ++  +       
Sbjct: 1   MKIIKRSGSEVNFDIQKIIDAIKGANSEVKEAERLTDRQVVYAAQNVADRCESA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               V +E+IQD VE  +M     ++ R Y++YR  +   R   +       +  
Sbjct: 55  -GHTVSVEEIQDMVEDEIMALDRFEVARRYIIYRYVQGLKRQKNTTDDKILSLIE 108


>gi|169343319|ref|ZP_02864329.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
 gi|169298617|gb|EDS80698.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
          Length = 710

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E++K + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +        
Sbjct: 2   EELKMLHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI---- 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                    V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  --EMSGKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 103


>gi|315924356|ref|ZP_07920578.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622235|gb|EFV02194.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 725

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKRNG    F+  KI  AI KA   V+      + ++Q +  N+ +Q           
Sbjct: 3   NVIKRNGEEVLFNIDKIVNAITKANAEVKPIRQLNAAQIQAVADNVEKQISAY------- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                +EDIQD VE  +M+   +++ + Y+ YR++R+ +R + +  +
Sbjct: 56  QHAAGVEDIQDLVETGIMEMRGYEVAQAYMHYRDKRTALRRSNTTDR 102


>gi|309388303|gb|ADO76183.1| ATP-cone domain protein [Halanaerobium praevalens DSM 2228]
          Length = 235

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL-LQ 85
             + VIKR+    ++   KI++AI +A +             +D  + +     + L L+
Sbjct: 4   SDMTVIKRDEREVAYSRDKITKAIYRAMIESGEDA------TEDDAEQVALDVESDLILE 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
                 I  +E+IQD VE  LM++ +    + Y+LYR +R   R  +   + + P+
Sbjct: 58  FYNEDQIPKVEEIQDLVEEKLMKAAYVTTAKAYILYRNKRQKTRLKRKKDRQENPL 113


>gi|76786720|ref|YP_330615.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77406616|ref|ZP_00783662.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
 gi|77411839|ref|ZP_00788173.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|76561777|gb|ABA44361.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77162116|gb|EAO73093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|77174775|gb|EAO77598.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
          Length = 723

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               ++VIKR+G + SFD  KI  A++KA   V         +++ I  ++  +   R  
Sbjct: 2   TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 61

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            +      + I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 62  DN------IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQ 102


>gi|22538221|ref|NP_689072.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77412973|ref|ZP_00789176.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
 gi|22535133|gb|AAN00945.1|AE014286_8 anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77160985|gb|EAO72093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
          Length = 723

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               ++VIKR+G + SFD  KI  A++KA   V         +++ I  ++  +   R  
Sbjct: 2   TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 61

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            +      + I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 62  DN------IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQ 102


>gi|319746024|gb|EFV98305.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus agalactiae ATCC 13813]
          Length = 732

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               ++VIKR+G + SFD  KI  A++KA   V         +++ I  ++  +   R  
Sbjct: 11  TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 70

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            +      + I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 71  DN------IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQ 111


>gi|291536646|emb|CBL09758.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis M50/1]
 gi|291541014|emb|CBL14125.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis XB6B4]
          Length = 729

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+        +    
Sbjct: 1   MKIIKRSGMEDTFDIKKIESAIRRANNSVIDYEKLTDKQIDEISKNVE-------VACEN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  +M      + R Y+ YR ++  VR + S  +    +  
Sbjct: 54  MKRSPSVEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNSTDEQILSLLE 108


>gi|66391299|ref|YP_238596.1| ORF045 [Staphylococcus phage Twort]
 gi|62637229|gb|AAX92340.1| ORF045 [Staphylococcus phage Twort]
          Length = 247

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 14/221 (6%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K  +K T +    +  E      +EG   ++         ++     L Y  
Sbjct: 29  KEALEEYSKYIEKNTRNFDNEV--ERVRTLTKEGTYDKVFDSIPDT--IIEEMTKLAYSF 84

Query: 290 DFAFE-YLGLQILYDRYFL----HINGSR-IEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +F F+ ++  Q  Y+ Y +      +    +E  +   +RVA+ L   +  K   A E  
Sbjct: 85  NFQFQSFMACQKFYESYAVTQYDKDDNPIFVEDYEQHNVRVALYLFQDDYVK---AREML 141

Query: 344 NLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             L       +TP   NSG  +  +LSSC+L  V D +  I          +K +GG   
Sbjct: 142 IQLMEQTLQPATPVYLNSGLGKRGELSSCYLFIVDDTIESINFITDSVRQASKNAGGCAV 201

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           D T +R  G  ++G    S+GVIPF K    +    NQG +
Sbjct: 202 DLTRLRPRGTEVNGVPNASKGVIPFAKNIEQSVSYFNQGKQ 242


>gi|25012079|ref|NP_736474.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae NEM316]
 gi|24413623|emb|CAD47700.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 732

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               ++VIKR+G + SFD  KI  A++KA   V         +++ I  ++  +   R  
Sbjct: 11  TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 70

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            +      + I +IQ+ VE  L+++  + I +EY+ YR +R   R+ 
Sbjct: 71  DN------IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQ 111


>gi|240146770|ref|ZP_04745371.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|257201054|gb|EEU99338.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
          Length = 729

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+        +    
Sbjct: 1   MKIIKRSGMEDTFDIKKIEAAIRRANNSVIDYEKLTDKQIDEISKNVE-------VACEN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  +M      + R Y+ YR ++  VR + S  +    +  
Sbjct: 54  MKRSPSVEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNSTDEQILSLLE 108


>gi|225026315|ref|ZP_03715507.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
 gi|224956325|gb|EEG37534.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
          Length = 720

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  A+ +A  +V         +V+ I +N     V  + +   
Sbjct: 1   MKIIKRSGMEVEFDRSKIIAAVKRANNSVVEGEKVSDEQVEKIAEN-----VETICEGM- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               +++E+IQD VE  +M     ++   Y+ YR +R+ VR + S  K    +  
Sbjct: 55  -NRALNVEEIQDLVENQIMNQKAFRLASNYITYRYKRALVRKSNSTDKQILSLLE 108


>gi|291532368|emb|CBL05481.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Megamonas hypermegale ART12/1]
          Length = 670

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 9/142 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR G +  F+  KI+ AI KA M      +      ++ +  +T   +  L       
Sbjct: 5   IKKRTGDIVKFNAQKITDAIKKANME-----SIDETFSKEQLSTITNNVIKALKNLK--- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE  L+        + Y+LYR E + +R A++            K    
Sbjct: 57  -TPGVEQIQDAVEKVLIAGNFASTAKAYILYRAEHTKLRQAKADLMDIYDELTFTKAKDA 115

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 116 DIKRENANIDADTAMGTMLKYG 137


>gi|325686730|gb|EGD28756.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK72]
          Length = 731

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|192824226|ref|YP_001994867.1| gp50 [Mycobacterium phage Pukovnik]
 gi|190610456|gb|ACE79976.1| gp50 [Mycobacterium phage Pukovnik]
          Length = 685

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 85/522 (16%), Positives = 153/522 (29%), Gaps = 139/522 (26%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG------------------- 442
            D + VR  GA +    GK+ G  PF ++       ++Q                     
Sbjct: 200 YDVSRVRPEGAKLKTFGGKASGPKPFAEMLIKVGKILSQHAYEGLAVSGISAMEIDHAIA 259

Query: 443 -------KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
                   R+ A  + +      + EF++ +  +G+        N +  + D F +   +
Sbjct: 260 SCVVAGGVRRSARMSMMHWADPQITEFVNCKNKSGEH----WTTNISVEVDDKFWRHAIK 315

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +                              R  + G  ++   + A  +   +      
Sbjct: 316 SPQ----------------------------RPENEGYGRLDDDVLAQNVLYTLAQGAVH 347

Query: 556 TGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            G P +         S   +VG    V  +N C EITL         CNLG INL A   
Sbjct: 348 NGEPGMW-------DSSLSNVGEPNRVVCTNPCGEITLEPWEP----CNLGHINLAAFVT 396

Query: 613 N-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +  + DY  L    R   R L      +     K+++    +R IG+G +G  S L L  
Sbjct: 397 DAGKTDYLDLIRAHRLMTRFLIR-ATFSAVADPKSREVLDRNRRIGVGHLGVASYLALTG 455

Query: 672 IPY----ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             Y              E    +   A     EL                          
Sbjct: 456 RRYSQAPGDKRFTAFLRELASEVDSEAQKFCHEL-------------------------- 489

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                          R+P    K+ +   G             T+A + GVS+ I P + 
Sbjct: 490 ---------------RIPVPVKKRTIAPTG-------------TVAKLAGVSEGIHPIFS 521

Query: 788 NLYVKSNMSGDFTVVNSFLV-----NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             + +       +  +  +       +++         +  +   D  +  +E      +
Sbjct: 522 RYFNRRIRFNKVSDFDQLMEMYSQGYDVEDDLFAPNTSVVTIPTKDTLVQAVED-RGWDE 580

Query: 843 KIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGK 883
           +I  +A ++    L+   +  Q  W D A S    +D  + K
Sbjct: 581 EIVESADDLTLTELMAFQALYQTCWADNAVSFTANVDPDAYK 622


>gi|325697285|gb|EGD39171.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK160]
          Length = 731

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|324992630|gb|EGC24551.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK405]
 gi|324995841|gb|EGC27752.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK678]
 gi|327460033|gb|EGF06372.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1]
 gi|327472179|gb|EGF17616.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK408]
 gi|327488623|gb|EGF20423.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1058]
          Length = 731

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|328944724|gb|EGG38885.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1087]
          Length = 732

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ESAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|332365289|gb|EGJ43052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1059]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|332363726|gb|EGJ41506.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK49]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|324989646|gb|EGC21590.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK353]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|327467918|gb|EGF13408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK330]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|325695345|gb|EGD37245.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK150]
          Length = 732

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|323350681|ref|ZP_08086342.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
 gi|322123101|gb|EFX94792.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|255024696|ref|ZP_05296682.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-208]
          Length = 141

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 31/165 (18%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L  
Sbjct: 1   LAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL-- 58

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                   N+   P         A+++D    +    RRQ+ +D
Sbjct: 59  ------------------------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVD 90

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q+ S N Y+       KL  ++  AW  GLKTTYY+RS      E
Sbjct: 91  QSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEE 135


>gi|332360137|gb|EGJ37951.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1056]
          Length = 756

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 34  EIAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 93

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 94  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 134


>gi|325688821|gb|EGD30829.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK115]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|327463474|gb|EGF09793.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1057]
          Length = 732

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|315221491|ref|ZP_07863411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
 gi|315189325|gb|EFU23020.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
          Length = 740

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V KR+G   +FD  KI +A++KA   V         +++ I   +  + + R    
Sbjct: 17  ADIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVIERF--- 73

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 74  ---PAGVKIYEIQNIVEHELLQANEYAIAESYITYRTQRDFARS 114


>gi|332671990|ref|YP_004454998.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
 gi|332341028|gb|AEE47611.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
          Length = 752

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTE 77
               P    G+ V KR+G V  FDP ++  A+ +AF  V G  G  + + + ++++ +  
Sbjct: 21  TTQSPSTAAGLVVRKRDGRVLPFDPIRVHSALGRAFAHVHGLLGPLQDLTIAELVERIDA 80

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +   R          V I +IQ+ VE +L+++  +++   Y+ YR +R   R+
Sbjct: 81  ELAARFT------GEVRIYEIQNVVEHTLLEAREYEVAEAYIDYRVQRDLARS 127


>gi|125719012|ref|YP_001036145.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           sanguinis SK36]
 gi|125498929|gb|ABN45595.1| Ribonucleotide reductase, class III, anaerobic, putative
           [Streptococcus sanguinis SK36]
          Length = 731

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V         +++ I   +  +  +R 
Sbjct: 9   ETAPAIYVEKRDGRRVTFDVSKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|328955274|ref|YP_004372607.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
 gi|328455598|gb|AEB06792.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
          Length = 745

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KIS AI  A   V+        +V    +N+ E          +
Sbjct: 6   MKIIKRSGVEVAFDVDKISSAIRGANKEVKEADRLTERQVIYASQNVAE-------ACER 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   V +E+IQD VE  +M     ++ R Y++YR  +   R   +       +   
Sbjct: 59  AGHTVSVEEIQDLVEDEIMALDRFEVARRYIIYRYLQGLKRQKNTTDDKILSLIEH 114


>gi|322831246|ref|YP_004211273.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
 gi|321166447|gb|ADW72146.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
          Length = 727

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 20  YPFPEKIKGVQ--VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
              P K   +Q  VIKR+G    FD   I +A+ +A  A          +V  I+     
Sbjct: 7   ETVPAKSTKMQPIVIKRDGCQVPFDEVLIKQAVQRAAEAAGIDSVDYCAQVARIVA---- 62

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                  ++ +    V I +IQD VE  LM   H K+ R Y+ YR +R   R  +     
Sbjct: 63  -------ENLQDQARVDIHEIQDAVENQLMAGPHKKLARAYIEYRHDRDVKREMRGRLNQ 115

Query: 138 D 138
           +
Sbjct: 116 E 116


>gi|159901278|ref|YP_001547525.1| ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894317|gb|ABX07397.1| Ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 755

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 20/193 (10%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +      +IKR+G   +FD ++I RA+ + F       A    +    +  L ++ V  L
Sbjct: 14  QVAPPTTIIKRDGREVTFDVARIERALTRCF-------AGLGRQPHTTVAELAQRVVNIL 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                      +E +QD VE  L  +G  +  + Y+LYR E +  R  +   ++      
Sbjct: 67  AAKY--TTTPTVEAVQDTVEVMLQAAGEFEAAKSYILYRAEHAKKREQRPVPEAIRHAFA 124

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA-- 201
           +                +           L    + I   +   N    +S++ L+ A  
Sbjct: 125 ESDQYFPS----PLQKFQFFDKYSRFDYDLGRRETWIETVDRSVNFLREISDNKLDDADY 180

Query: 202 -----LIFSSRTL 209
                 I   R +
Sbjct: 181 NRVRQAILEMRAM 193



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 84/565 (14%), Positives = 169/565 (29%), Gaps = 94/565 (16%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL---QDVSSKIVLSETYKNMYDGL 193
            D  +AP   I+  DG  ++F+  R+E  +    +GL      +   +       +    
Sbjct: 11  DDRQVAPPTTIIKRDGREVTFDVARIERALTRCFAGLGRQPHTTVAELAQRVVNILAAKY 70

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           + +    A+  +   +++    +    A+  +   R E      ++P             
Sbjct: 71  TTTPTVEAVQDTVEVMLQAAGEFE--AAKSYILY-RAEHAKKREQRPVPEAIRHAFAESD 127

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY-ERDFAF-EYLGLQILYDRYFLHING 311
           +YF   +++         S  D+DL      ++  +R   F   +    L D  +  +  
Sbjct: 128 QYFPSPLQKF--QFFDKYSRFDYDLGRRETWIETVDRSVNFLREISDNKLDDADYNRVRQ 185

Query: 312 SRIEMPQAFFMRVAM----GLALKETEKEKRAVEFYNL------------------LSSF 349
           + +E      MR AM     LA+      +  +  YN                   +S  
Sbjct: 186 AILE------MR-AMPSMRLLAMAGPAARRNNIAIYNCSYLPVDSIDSFVEALIISMSGC 238

Query: 350 HFMCS---------TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               S               SG    Q        V D   G   AL+           +
Sbjct: 239 GVGFSVEHKYIEQFPRVKRQSGAPATQYV------VEDSAEGWADALRFGLETWFAGNDV 292

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             D + +R  GA +    G++ G  PF ++ +    A ++   R+G+    ++       
Sbjct: 293 TFDLSQLRPAGAPLRIKGGRASGPEPFRQMLDF---ARSRILARQGSFLRSIDAH----- 344

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
                     D      +   +  +    M         +LF  D+   L    G     
Sbjct: 345 ----------DIMCSVGNAAVSGGVRRTAM--------ISLFDYDDHDMLTAKDGDFDRE 386

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFE-TGHPWITFKDPCNIRSPQQHVGVV 579
             + +   A+   +     ++ + +  ++L M+    G P I  +       P +     
Sbjct: 387 NSQRW--NANNSAVWPASGLTQLEIIEQVLAMVKSGRGEPGIFNRQSAIDMRPSRRKPAE 444

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
             +N C EI L               NL A  A     ++ L   +  A  +        
Sbjct: 445 FGTNPCGEIILRPYQ---------FCNLTAAVARADDTFETLREKVEVATIIGTIQSMAT 495

Query: 640 CHT--IEKAKKSNHTHRAIGLGLMG 662
                  +  ++    R +G+ + G
Sbjct: 496 HFPGLRPQWSENCQEERLLGVDITG 520


>gi|312866777|ref|ZP_07726990.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
 gi|311097560|gb|EFQ55791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
          Length = 739

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A++KA   V         +++ I+  +  + + R   
Sbjct: 15  VPDIFVEKRDGRRVQFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERF-- 72

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 73  ----PNGVKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 113


>gi|315639678|ref|ZP_07894818.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
 gi|315484639|gb|EFU75095.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
          Length = 729

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRL 83
           ++K ++V+KR+G    FD  KI  A++KA   V G   AS    +  I+  + ++   R 
Sbjct: 17  QLKKMKVVKRDGRFVVFDDQKIYDALLKATQQVNGPLQASDHQVIHQIVTQINQEIAARF 76

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            ++      V I +IQ+ VE +L+Q+  +++   Y+ YR +R   R  
Sbjct: 77  KKN------VKIYEIQNIVEHTLIQNHLYQLAEHYMHYRSQRDLEREQ 118


>gi|268592801|ref|ZP_06127022.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
 gi|291311585|gb|EFE52038.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
          Length = 714

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  AV  K     ++V  ++   TEQ  +R        
Sbjct: 7   VIKRDGCQVGFDLPRIQEAVKRAAAAVNVKDDDYCLQVASVV---TEQLCSR-------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 56  DRVDIADIQDAVENQLMAGPYKDLARAYIEYRHDRDSEREKRSQLTHD 103


>gi|332300584|ref|YP_004442505.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177647|gb|AEE13337.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 799

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A       +  ++      +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATGQTECLQEAKI------VTMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|312961516|ref|ZP_07776017.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
 gi|311284195|gb|EFQ62775.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
          Length = 666

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F+P KI +A++ A  A      +        +  L    + RL    +S   
Sbjct: 15  KRDGSLAPFNPEKIRQALIAAGTATGEYQEAD-------VDLLLGAVLARL----RSIDH 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + +E IQD VE  LM +G+    R Y++YRE+   +R  +      A    +
Sbjct: 64  LDVEQIQDSVERVLMDAGYFLSMRAYIVYREQHGRLRRDRKTLVEVATSMNE 115


>gi|257876806|ref|ZP_05656459.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257810972|gb|EEV39792.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 730

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDII 72
             P         ++ ++++KR+G +  FD  KI  A++KA   V G+       ++ +I+
Sbjct: 5   RNPEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKVNGELSPIDHEKITEIV 64

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++  +   R   +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 65  DSVDHEIAERFRTN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 116


>gi|156740149|ref|YP_001430278.1| ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
 gi|156231477|gb|ABU56260.1| Ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
          Length = 769

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 21/190 (11%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P+ I    +IKR+G V  FD ++I  A+ + F +      +        I  L 
Sbjct: 16  SIDVRHPDVIVPTTIIKRDGRVVPFDVTRIENAMARCFASFGRTPDTP-------IPELA 68

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           ++ V  ++          +E +QD VE  L  +G  +  + Y+LYR ER+  R  +    
Sbjct: 69  QRVVN-IVAAKSQGKPPTVEGVQDIVEMVLQAAGEFEAAKRYILYRAERARERERRPIPD 127

Query: 137 SDAPIAPKLKIMMDDG----------TLISFNSKRLEMIVE---EACSGLQDVSSKIVLS 183
                  + ++               +  +++  R E  +E    A   L +++   +  
Sbjct: 128 HVRRAFDEARVYFPTPLQQFQFFDKYSRFNYDLGRRETWIETVDRAVDYLHELAGDRLPR 187

Query: 184 ETYKNMYDGL 193
           ETY+ +   +
Sbjct: 188 ETYERIRRSI 197



 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 173/571 (30%), Gaps = 125/571 (21%)

Query: 147 IMMDDGTLISFNSKRLEMIVEE--ACSGLQDVSSKIVLSETYKNMYDGLSE--------- 195
           I+  DG ++ F+  R+E  +    A  G    +    L++   N+    S+         
Sbjct: 30  IIKRDGRVVPFDVTRIENAMARCFASFGRTPDTPIPELAQRVVNIVAAKSQGKPPTVEGV 89

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D+   ++ ++           +   R++L                +      +   P++
Sbjct: 90  QDIVEMVLQAAGE--------FEAAKRYILY-------------RAERARERERRPIPDH 128

Query: 256 FCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL---YDR---YFLH 308
             R  +E  V      +    FD        KY R F ++    +      DR   Y   
Sbjct: 129 VRRAFDEARVYFPTPLQQFQFFD--------KYSR-FNYDLGRRETWIETVDRAVDYLHE 179

Query: 309 INGSRI--EMPQA-----FFMRVAM----GLALKETEKEKRAVEFYN------------- 344
           + G R+  E  +        MR AM     LA+      + AV  YN             
Sbjct: 180 LAGDRLPRETYERIRRSILEMR-AMPSMRLLAMAGPAARRNAVAIYNCSYQPVESIDSFV 238

Query: 345 -LLSSFHFMCSTPTLFNSGT---------RHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
             L      C       S           +  +  + F+  V D   G   AL+      
Sbjct: 239 EALIISMAGCGVGFSVESRYVENFPRIKRQTGKPPTTFV--VEDSAEGWADALRYGLETW 296

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              G +  D + +R  GA +    G++ G  PF  + +      N+   R+G+   +L  
Sbjct: 297 FEGGDVHFDLSHLRPAGAPLRTKGGRASGPEPFRAMLDF---VRNRIFARQGS---FLRP 350

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV-SDLHDL 513
             ID  + +              +   +  +    M         +LF  D+    L   
Sbjct: 351 --IDAHDIMCA----------VGNAAVSGGVRRTAM--------ISLFDYDDDEMRLAKS 390

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              E E +       +         ++  +  + +M+      G P I  ++  N+  P 
Sbjct: 391 GDFERENSQRWNANNSAVWPRGGLTQLEFIRHFMEMVESQ--RGEPGIFNREASNLMKPA 448

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +       +N C EI L         CNL +        ++ FD   L   +  A  +  
Sbjct: 449 RRKEAEFGTNPCGEIVLRPWQ----FCNLSA---AVARVDDTFDT--LRDKVEVATIIGT 499

Query: 634 NVIDINCHT--IEKAKKSNHTHRAIGLGLMG 662
                          +++    R +G+ + G
Sbjct: 500 IQSLATHFPGLRPMWRQNCEEERLLGVDITG 530


>gi|313885875|ref|ZP_07819615.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924630|gb|EFR35399.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 799

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A       +  ++      +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATGQTECLQEAKI------VTMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|332365428|gb|EGJ43189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK355]
          Length = 732

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD +KI +A+++A   V         +++ I   +  +  +R 
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVAKIYKAMVRAAQEVGPLNPMLEAKLEAITDRIVAEISSRF 69

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 110


>gi|319940096|ref|ZP_08014450.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
 gi|319810810|gb|EFW07137.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
          Length = 736

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V KR+G   +FD  KI +A++KA   V         +++ I   +  + ++R    
Sbjct: 13  ADIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVISRF--- 69

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 70  ---PAGVKIYEIQNIVEHELLNANEYAIAESYITYRTQRDFARS 110


>gi|296875605|ref|ZP_06899676.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433402|gb|EFH19178.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 743

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V KR+G    FD  KI +A++KA   V         +++ I+  +  + + R    
Sbjct: 20  PDIFVEKRDGRRVQFDVEKIYKALLKATEEVASLTPVLEAKLEAIVDRVIAEILERF--- 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+
Sbjct: 77  ---PNGVKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERS 117


>gi|290559190|gb|EFD92546.1| ribonucleotide reductase alpha subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 301

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 775 ICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + GVS  I+P +   Y++ + S     F V++ F+   + +  +  +             
Sbjct: 1   MAGVSGGIEPIFALSYIRRSESLSEEKFEVLDPFVKRYMDKLGIKSKK------------ 48

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYR 890
                   DL  I  TA  IDP + ++  +  QK ID + S  + L   +    +D IYR
Sbjct: 49  --------DLPDIFVTAHNIDPFFRVKMQAAVQKHIDSSISSTVNLSAGTDADTVDKIYR 100

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            AW +G K+    R  S   + KS  +    K +
Sbjct: 101 YAWKLGCKSITVYREGSKNDILKSLDEEKPEKES 134


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++  ++IKR+   + F  +KIS AI KA M+V       +         ++   +  LL
Sbjct: 5   QLEITEIIKRDYETSPFVLNKISNAIEKAMMSVGNGTKEDA-------NGISVNVLQTLL 57

Query: 85  QHNKSAL--IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +        +  +E++QD VE  LM S    + + Y+LYR+E++  R   
Sbjct: 58  ERKGKDHSYLPTVEEVQDLVEEKLMGSAFPNVAKAYILYRDEQARNRKTN 107


>gi|301155917|emb|CBW15387.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           parainfluenzae T3T1]
          Length = 708

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    FD  +I+ AI KA  AV              I +L+++  T +  
Sbjct: 1   MNAFFVIKRDGSRIGFDLQRITNAIRKAASAVNIVDEMY-------IHDLSQRINTEIFS 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H +    + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 54  HYQHE--IDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|288574330|ref|ZP_06392687.1| anaerobic ribonucleoside-triphosphate reductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570071|gb|EFC91628.1| anaerobic ribonucleoside-triphosphate reductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 679

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F+  +I         AV    A+  I  Q I + +T Q  + L       
Sbjct: 5   IRKRDGREVPFEKDRIR-------KAVMKAAAAVDIHDQKIGEAVTRQAESYLDIFFNHE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS----HSKSDAPIAPKLK 146
               +E +QD VE  L++ GH  I + Y+LYR++ S +R  +       +       KL 
Sbjct: 58  GSPSVEQVQDLVEKILIEKGHADIAKAYILYRQQHSRLRDTRQLLGGAVEMVGQYLHKLD 117

Query: 147 IMMDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
             +++ + +S++ + L   +     A   L ++    +        +      DL    +
Sbjct: 118 WKVNENSNMSYSLQGLNNYIASEITAQYWLNEIYPPSIREHHVSGDFH---IHDLSNLSV 174

Query: 204 FSS 206
           +  
Sbjct: 175 YCC 177


>gi|325281162|ref|YP_004253704.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312971|gb|ADY33524.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
          Length = 735

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  A+ +A +  +                L  +   R+    +  
Sbjct: 5   VLKRDGRVVGFNEEKIVAAVRRAMLHTDKGEDM----------QLAHEIADRIACRGQEQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +   +EDIQ+ VE  LM+S    + + Y+ YR +RS  R A++  
Sbjct: 55  M--SVEDIQNCVEIELMKSRRKDVAQLYIAYRNQRSVARKAKTRD 97


>gi|323126203|gb|ADX30668.1| gp50 [Mycobacterium phage Wonder]
          Length = 670

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 87/516 (16%), Positives = 154/516 (29%), Gaps = 144/516 (27%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG------------------- 442
            D + VR  GA +    G + G +P  ++  D    +++                     
Sbjct: 196 YDVSRVRQFGAKLKTFGGTASGPLPLARMLIDVCEILSEIAHDGERLDGISAMGIDHAIA 255

Query: 443 -------KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
                   R+ A  A +      ++ F+ ++  TG         N +  +   F   V  
Sbjct: 256 QCVVAGGVRRSARMAMMHWNDPQIDRFVGIKAATGSH----WTTNISVEVDQDFWDAVKV 311

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
             G                                          +A  + RK+   +  
Sbjct: 312 GGG------------------------------------------NAEYILRKITEGMVA 329

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-- 613
            G P   F D     S       V  +N C EITL         CNLG +NL A      
Sbjct: 330 NGEPG--FWDSL---SNVGEPNEVVCTNPCGEITLEPWEP----CNLGHVNLAAFVREDT 380

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           N+ DY  L    R   R L      +     K+++    +R IG+G +G  S L +    
Sbjct: 381 NKVDYLGLYKAHRLITRFLIR-ATFSEVADPKSREVLDRNRRIGVGHLGVASFLAMTGKR 439

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+   A     + +  ++     A+ E A +                     I +  + R
Sbjct: 440 YSEAPASPF-RDVLRHLAHEVDKAAEEFAHQLR-------------------IPVPVKKR 479

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                                           +APT TIA + GVS+ I P +   +++ 
Sbjct: 480 -------------------------------TVAPTGTIAKMPGVSEGIHPIFSRYFIRR 508

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD-LKKIHATAFEI- 851
                     + ++ +  ++    E  +        SI   + +  + +K+    A ++ 
Sbjct: 509 VRLSMSDPEQTRMLADYGRQGYEVEDDLYAKFTGVVSIPTQDTLVAEVVKRYGRDAEDLV 568

Query: 852 ---DPMWLIESASRRQK----WIDQAQSLNLYLDEP 880
              D + L E  + +      W D A S    +D  
Sbjct: 569 ESADQLTLNEMLAFQAMYQMIWADNAVSFTANVDPD 604


>gi|290581341|ref|YP_003485733.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
 gi|254998240|dbj|BAH88841.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
          Length = 734

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI +AI++A   V         ++  I   +  +   R  ++    
Sbjct: 17  VIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAEIYERFTEN---- 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+ 
Sbjct: 73  --IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERSQ 111


>gi|111184260|gb|ABH08180.1| HSPV074d [Horsepox virus]
          Length = 96

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L T +
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELNTLV 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
              + T   + P+YA + AR  +  L +E    + K
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKETKNYLVK 96


>gi|24380409|ref|NP_722364.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           mutans UA159]
 gi|24378433|gb|AAN59670.1|AE015029_9 putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans UA159]
          Length = 734

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI +AI++A   V         ++  I   +  +   R  ++    
Sbjct: 17  VIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAEIYERFTEN---- 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+ 
Sbjct: 73  --IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERSQ 111


>gi|302386691|ref|YP_003822513.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197319|gb|ADL04890.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  +D  KI  AI KA   VE    +    +  I+  +           + 
Sbjct: 2   IKVQKRDGRIVEYDREKIVTAIGKANAEVEASEQAGEEMIDGILDFV----------ESH 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           +  ++++E IQD +E  L+    + ++++Y++YR +R+ +R A +  +S
Sbjct: 52  AEDVINVETIQDMIESGLVNRNKYTLSKKYIIYRYQRALLRKANTTDES 100


>gi|260655536|ref|ZP_05861024.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
 gi|260629984|gb|EEX48178.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
          Length = 693

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 17/180 (9%)

Query: 25  KIKGVQVI---KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           +   + +    KR+G    FD  KI        +AV    A+       I +N+T Q  +
Sbjct: 7   EESAMLIRYIFKRDGSQVLFDREKIR-------VAVMKAAAAVGSSDPSIGENVTRQVES 59

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L        I  +E IQD VE  L+++ + ++ + Y+LYR +R+ +R  +      A +
Sbjct: 60  YLAIFYDHDSIPSVEQIQDLVERILIENDYAEVAKAYILYRRQRARIRDTKELLGGAADL 119

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             +    +D     + N          +  GL +  +  + ++ + N        DL T+
Sbjct: 120 VNRYLDNIDWKVNENSNM-------SYSLQGLNNYIASEITAQYWLNEIYTPKIRDLHTS 172


>gi|188026380|ref|ZP_02961883.2| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
 gi|188020182|gb|EDU58222.1| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
          Length = 732

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I  AI +A  AV  +     +           Q  T + +   + 
Sbjct: 25  VIKRDGCQVNFDFQRIQEAIKRASAAVNIQDDDYCL-----------QVATTVTEQLGNR 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 74  EKVDIREIQDAVENQLMSGPYKDLARAYIEYRHDRDSAREKRSQLTHD 121


>gi|329769428|ref|ZP_08260841.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
 gi|328838998|gb|EGF88589.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
          Length = 294

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           IK + VIKR+G V  FDP KI +AI KA   V G+    S+ + +I+  +  +   R   
Sbjct: 18  IKNLLVIKRDGRVVKFDPDKIYKAIEKAVFKVFGE--KHSVNIDNIVDKVILEISNRFKD 75

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +      + I ++Q+ VE +L+ SG   I  EYV YR +R   R  
Sbjct: 76  N------IKIYEVQNIVEHTLLTSGEEAIYEEYVGYRSKRDIEREH 115


>gi|312865276|ref|ZP_07725504.1| ATP cone domain protein [Streptococcus downei F0415]
 gi|311099387|gb|EFQ57603.1| ATP cone domain protein [Streptococcus downei F0415]
          Length = 112

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KR+G V  FDP KI +AI+KA  +V         +++  +  +T++ V  L + + 
Sbjct: 1   MQITKRSGQVVEFDPDKIYQAILKAAQSVYVLDD----KLRQELAEVTKKVVIDLEEAH- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            A    I  +Q QVE  LM +G+  I   Y+ YR +R   R       +      KLK
Sbjct: 56  -ADRPTISMVQSQVENRLMDAGYINIAEHYISYRLQRDLERNGYGDQIAVHLRFEKLK 112


>gi|332686125|ref|YP_004455899.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
 gi|332370134|dbj|BAK21090.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 730

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  +++IKR+G +  F   KI  A+MKA   + G        R+Q+I+  + ++   R  
Sbjct: 16  LSKIKIIKRDGRLVDFSNKKIYDALMKAERQINGSLDPLAYERIQEILDRVDQEISERFT 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L++   +++   Y+ YR  R   R+
Sbjct: 76  NN------VKIYEIQNIVEHTLLEKNEYELAEAYINYRTRRDFERS 115


>gi|148658653|ref|YP_001278858.1| ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
 gi|148570763|gb|ABQ92908.1| Ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
          Length = 768

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S     P+ +    +IKR+G V  FD S+I  A+ + F +    G      + ++ + + 
Sbjct: 16  STDTLHPDVVVPTMIIKRDGRVVPFDVSRIENAMARCFAS---FGRIPDTPIPELAQRVV 72

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                RL           +E +QD VE  L  +G  +  + Y+LYR ER+  R  +    
Sbjct: 73  NIVAARL-----QGRPPTVEGVQDIVEMVLQAAGEFEAAKRYILYRAERARERERRPVPD 127

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEM-------------IVEEACSGLQDVSSKIVLS 183
                  + ++             +                 V+ A   L +++   +  
Sbjct: 128 HVRRAFDEARVYFPTALQQFQFFDKYSRFNYELGRRETWIETVDRAVDYLYELAGDRLPR 187

Query: 184 ETYKNMYDGL 193
           ETY+ +   +
Sbjct: 188 ETYERIRRNI 197



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 42/303 (13%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +  +    F+  V D   G   AL+         G +  D + +R  GA +    G++ 
Sbjct: 267 RQTGKPPVTFV--VEDSAEGWADALRYGLETWFEGGDVHFDLSHLRPAGAPLRTKGGRAS 324

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G  PF  + +      N+   R+G+   +L    ID  + +              +   +
Sbjct: 325 GPEPFRAMLDF---VRNRIFARQGS---FLRP--IDAHDIMCA----------VGNAAVS 366

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             +    M         +LF  D+  ++      +FE         A+   +     ++ 
Sbjct: 367 GGVRRTAM--------ISLFDYDDD-EMRLAKAGDFERENSQRWN-ANNSAVWPRGGLTQ 416

Query: 543 VALWRKMLTML-FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
               R  + M+  + G P I  ++  N+  P +       +N C EI L           
Sbjct: 417 REFIRHFMEMIESQRGEPGIFNREAANLMKPARRKEADFGTNPCGEIVLRPWQ------- 469

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLG 659
               NL A  A     ++ L   +  A  +                 K++    R +G+ 
Sbjct: 470 --FCNLSAAVARVDDTFETLRDKVEVATIIGTIQSLATHFPGLRPMWKQNCEEERLLGVD 527

Query: 660 LMG 662
           + G
Sbjct: 528 ITG 530


>gi|222823093|ref|YP_002574666.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
 gi|222538314|gb|ACM63415.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
          Length = 759

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+    +FD  KI  AI KA +      +       D +  L ++ V  L + +   
Sbjct: 6   IIKRDKSQVAFDIFKIKNAIFKANI-----NSIDEKLNNDFLDKLCDEVVALLDEKH--- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +E IQD+VE  L+++      + Y+LYR++R+ +R 
Sbjct: 58  --IQVEQIQDKVEEVLIKNALVNTAKSYILYRQKRTQIRN 95


>gi|313885613|ref|ZP_07819363.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619343|gb|EFR30782.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 746

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +QVIKR+    +FD SKI  AI KA   VEG+ +S+ +     I+ L  + +T + +
Sbjct: 13  LASMQVIKRDKRQVAFDASKIQVAIEKAVTEVEGQVSSQRLV---EIEALVAEILTTIQE 69

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE----RSDVRAAQSHSKSDAPI 141
                  ++I +IQ  VE  L+QS   ++   Y+ YR +    R+D        +S    
Sbjct: 70  RFTRD--INIYEIQSIVEQHLLQSNMPEVAHAYIDYRVKQDFARADATNINHRIQSLLDQ 127

Query: 142 APKLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKI 180
              +     +     FN+KR L   +     GLQ +   +
Sbjct: 128 DKTVVNENANKDSRVFNTKRDLTAGITAKAIGLQMLPPHV 167


>gi|157368772|ref|YP_001476761.1| anaerobic ribonucleoside triphosphate reductase [Serratia
           proteamaculans 568]
 gi|157320536|gb|ABV39633.1| anaerobic ribonucleoside-triphosphate reductase [Serratia
           proteamaculans 568]
          Length = 712

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I +AI +A +AV    A     V  ++            Q     
Sbjct: 5   VIKRDGCQVPFDEARIGQAIERAALAVGIVNADYCATVARVVA-----------QRMSQQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  QRVDIHEIQQAVENQLMAGEYKQLARAYIEYRHDRDVARELRGRLNQE 101


>gi|228470172|ref|ZP_04055079.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
 gi|228308123|gb|EEK16986.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
          Length = 799

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A                K +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATG------QTECLQEAKTVTMGVLGRIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRN 103


>gi|313622836|gb|EFR93155.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria
           innocua FSL J1-023]
          Length = 140

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 31/163 (19%)

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L    
Sbjct: 2   KEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL---- 57

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                 N+   P         A+++D    +    RRQ+ +DQ+
Sbjct: 58  ----------------------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQS 91

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            S N Y+       KL  ++  AW  GLKTTYY+RS      E
Sbjct: 92  LSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEE 134


>gi|325578789|ref|ZP_08148836.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159613|gb|EGC71745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 708

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    FD  +I+ AI KA  AV           +  I +L+++  T +  
Sbjct: 1   MNAFFVIKRDGSRIGFDLQRITNAIKKAASAVNIVD-------EIYIHDLSQRINTEIFS 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H +    + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 54  HYQHE--IDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|25011136|ref|NP_735531.1| hypothetical protein gbs1085 [Streptococcus agalactiae NEM316]
 gi|76798073|ref|ZP_00780329.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|23095535|emb|CAD46744.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586578|gb|EAO63080.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|319745053|gb|EFV97380.1| ribonucleoside-diphosphate reductase [Streptococcus agalactiae ATCC
           13813]
          Length = 112

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLEDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+      Y+ YR +R   R       +      K+K
Sbjct: 59  ----PTINMIQSLVENRLLDAGYIHTAEHYISYRLQRDLERNGYDDQITVHLHFEKIK 112


>gi|297518512|ref|ZP_06936898.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
          Length = 195

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 14/188 (7%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFIATHVRPNSVTFSSQQ----QRLNWLVNEGYYDESVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            E  A++  + + S  F  +TPT  N G  +  +L SCFL  + D++  I  A+     L
Sbjct: 129 -ETLALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 187

Query: 394 AKYSGGLG 401
           +K  GG+ 
Sbjct: 188 SKRGGGVA 195


>gi|226329644|ref|ZP_03805162.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
 gi|225202830|gb|EEG85184.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
          Length = 533

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A +A E       + V         Q+V++ L    + 
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRAAVACEITDDDYCVSV--------AQSVSQSLAGRSN- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   H  + R Y+ YR +R   R  +     +
Sbjct: 56  --VDIREIQDAVENQLMAGKHKDVARAYIEYRHDRDVAREQRGRLTQE 101


>gi|195953774|ref|YP_002122064.1| anaerobic ribonucleoside triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933386|gb|ACG58086.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 710

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 30  QVIKRNG-GVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +V+KR+      FD ++I +AI KAF AV       +  ++DI K +      R L    
Sbjct: 19  RVLKRDNVTEVDFDVNRIEKAIEKAFDAVSEFKGIDNAYIKDIAKEVISAICRRGLS--- 75

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
              ++ IE IQD VE +++  G  K+ R Y++Y
Sbjct: 76  ---VITIEQIQDIVEETIIAHGFSKVARAYIVY 105


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK- 88
           ++IKR+     F   KI+ AI  A  A+       +       K ++ Q    LL + + 
Sbjct: 8   KIIKRDYSTAPFVLEKITNAIANAMAALGHGSEQDA-------KLISMQVYESLLNNKEQ 60

Query: 89  -SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            S  I  +E +QD VE  LM S  H + + Y++YR +R+  R   
Sbjct: 61  ESEYIPTVEQVQDMVEDKLMSSEFHDVAKAYIIYRNKRALERKTN 105


>gi|262274139|ref|ZP_06051951.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
 gi|262221949|gb|EEY73262.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
          Length = 706

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+GG   F+  +I  A+M A  AVE    + +  V D +           L      
Sbjct: 5   VIKRDGGRVPFERQRIKDAVMSAAFAVEDMDEAYAAAVADGV-----------LAQFMRD 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   +  + R Y+ YR +R  +R  +S   ++
Sbjct: 54  EEVDIHQIQDAVENHLMAGPYKAVARAYIEYRHDRDSIREKKSRLSNE 101


>gi|229828070|ref|ZP_04454139.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
 gi|229792664|gb|EEP28778.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
          Length = 764

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  KI +AI KA      +G       +  I  +       +     + 
Sbjct: 33  VMKRSGERVPFDLDKIIKAIQKAN---NEEGIVSERLTEGEIAGMAYGI---MKDAENTG 86

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             + +E+IQD+VE +LM SG HK+ R Y+ YR + +++R   +  +  A +  +
Sbjct: 87  RDLSVEEIQDKVEDALMGSGKHKVARLYITYRYKHNEMRKMSAIDQKIAGVVER 140


>gi|168217624|ref|ZP_02643249.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
 gi|182380348|gb|EDT77827.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|168205767|ref|ZP_02631772.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|168209745|ref|ZP_02635370.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
 gi|170662686|gb|EDT15369.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|170712053|gb|EDT24235.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|182624325|ref|ZP_02952110.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
 gi|177910543|gb|EDT72916.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|168213431|ref|ZP_02639056.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
 gi|170714994|gb|EDT27176.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|110802339|ref|YP_699763.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens SM101]
 gi|110682840|gb|ABG86210.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens SM101]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|110798770|ref|YP_697194.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens ATCC 13124]
 gi|110673417|gb|ABG82404.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens ATCC 13124]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|18311489|ref|NP_563423.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens str. 13]
 gi|18146173|dbj|BAB82213.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens str. 13]
          Length = 705

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A   V    A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRAANEVG--IAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|76787167|ref|YP_329761.1| ATP cone domain-containing protein [Streptococcus agalactiae A909]
 gi|77409851|ref|ZP_00786486.1| Unknown [Streptococcus agalactiae COH1]
 gi|77410524|ref|ZP_00786885.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77415022|ref|ZP_00791098.1| Unknown [Streptococcus agalactiae 515]
 gi|76562224|gb|ABA44808.1| ATP cone domain protein [Streptococcus agalactiae A909]
 gi|77158928|gb|EAO70163.1| Unknown [Streptococcus agalactiae 515]
 gi|77163472|gb|EAO74422.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77171541|gb|EAO74775.1| Unknown [Streptococcus agalactiae COH1]
          Length = 112

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLEDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R       +      K+K
Sbjct: 59  ----PTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLERNGYDDQITVHLHFEKIK 112


>gi|317496440|ref|ZP_07954792.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
 gi|316913455|gb|EFV34949.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
          Length = 727

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 8/106 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            K + VIKR+G V  FD  KI +AI KA  +V G+    S+ +  I+ N+  +   R   
Sbjct: 18  TKNLLVIKRDGRVVKFDADKIYKAIEKAVKSVFGE--KHSVNIDSIVDNVIIEIGNRFKD 75

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +      + I ++Q+ VE +L+  G   I  EYV YR  R   R  
Sbjct: 76  N------IKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMRDIERER 115


>gi|28210021|ref|NP_780965.1| anaerobic ribonucleoside triphosphate reductase [Clostridium tetani
           E88]
 gi|28202456|gb|AAO34902.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium tetani
           E88]
          Length = 704

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SF+  KI+ AI +A   +  +             NLT+  +  L +  K  
Sbjct: 4   VVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFM------NLTQNVIKVLEKSVKDE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E+IQ+ VE +LM++ +  I R Y  YR+ER+ +R  +S
Sbjct: 58  --ITVEEIQNLVERTLMENNYKNIGRAYANYRQERTRIREIKS 98


>gi|125623154|ref|YP_001031637.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|4098081|gb|AAD00215.1| anaerobic ribonucleotide reductase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491962|emb|CAL96888.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069900|gb|ADJ59300.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 747

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ + 
Sbjct: 11  TLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDKS-------VLSELTDRVVSEIF 63

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   V I +IQ  VE  L++SG   +  EY+ YR  R   R   +           
Sbjct: 64  SRFSEN--VKIYEIQSIVEQELLESGETALAEEYISYRANRDLARTKATDINFTIE---- 117

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 118 -KLINRDQTVVNENANK 133


>gi|229550958|ref|ZP_04439683.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538331|ref|YP_003172830.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
 gi|229315673|gb|EEN81646.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257150007|emb|CAR88979.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
          Length = 727

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++     
Sbjct: 6   TQIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKIRDRYH 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 62  DD--VEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVN-----YNVARLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDKSVVNENANKDSRVFS 133


>gi|199599013|ref|ZP_03212421.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|258507133|ref|YP_003169884.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|199590121|gb|EDY98219.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|257147060|emb|CAR86033.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|259648503|dbj|BAI40665.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
          Length = 727

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++     
Sbjct: 6   TQIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKIRDRYH 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 62  DD--VEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVN-----YNVARLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDKSVVNENANKDSRVFS 133


>gi|260881448|ref|ZP_05893445.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260848801|gb|EEX68808.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 758

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 10/107 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    ++  KI  AI  A  A  G   S     +  +  +T Q    +       
Sbjct: 6   VTKRSGHTVPYNREKIYHAIAGAN-ADGGNTMS-----EKDVDEVTSQVEWDIKDR---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V +E+IQD VE  LM+   + I ++Y+ YR++ ++ RAAQ H   
Sbjct: 56  DNVSVEEIQDIVEQELMKYDFYDIAKKYITYRQKHAERRAAQKHLME 102


>gi|16272049|ref|NP_438248.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae Rd KW20]
 gi|260580621|ref|ZP_05848448.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
 gi|1171762|sp|P43752|NRDD_HAEIN RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|1573024|gb|AAC21751.1| anaerobic ribonucleoside-triphosphate reductase (nrdD) [Haemophilus
           influenzae Rd KW20]
 gi|260092683|gb|EEW76619.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
          Length = 707

 Score = 99.1 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|253682276|ref|ZP_04863073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
 gi|253561988|gb|EES91440.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
          Length = 703

 Score = 99.1 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KI+ AI                  +  +  LT++ + ++   N 
Sbjct: 2   LYVVKRDGRRVPFDSIKITNAIK------GSADEIAFNLKESEVIELTQKVIHQIEDKNC 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +E+IQ+ VE +L ++G+  I + Y  YR ER+ +R  +SH  +
Sbjct: 56  DE--ISVEEIQNIVENALQKNGYELIWKTYSNYRRERTKIREKKSHLMT 102


>gi|332526298|ref|ZP_08402426.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
 gi|332110436|gb|EGJ10759.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
          Length = 675

 Score = 99.1 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           + A P  A     +   + VIKR G   +FDP+KI+        A+   GA+        
Sbjct: 3   DAALPPSA---DTQAAPLAVIKREGRTVAFDPAKIA-------DALARAGAATGEYDAAR 52

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              LT+Q   RL +      +  +E IQD+VE  L ++GH    R Y++YRE+R  +R  
Sbjct: 53  AAELTQQVTERLRRR-----VTGVEQIQDEVERVLQEAGHFDTARAYIVYREQRRALRQD 107

Query: 132 QS 133
           +S
Sbjct: 108 RS 109


>gi|145639636|ref|ZP_01795239.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|145271193|gb|EDK11107.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|309750606|gb|ADO80590.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2866]
          Length = 707

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|77407156|ref|ZP_00784145.1| Unknown [Streptococcus agalactiae H36B]
 gi|77174233|gb|EAO77113.1| Unknown [Streptococcus agalactiae H36B]
          Length = 112

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    +++ +  +T++ +  L   + 
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDES----LRZDLAQVTKKVILDL--EDA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R       +      K+K
Sbjct: 55  QVERPTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLERNGYDDQITVHLHFEKIK 112


>gi|238783484|ref|ZP_04627506.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
 gi|238715539|gb|EEQ07529.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
          Length = 712

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|299821095|ref|ZP_07052983.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
 gi|299816760|gb|EFI83996.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
          Length = 717

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           + EK     V KR+G    FDP KI +AI+ A  A E              +N  +  + 
Sbjct: 2   YTEKETQQVVEKRDGRQVDFDPGKIRKAILAAMNAQETD-----------AENQIDVFLE 50

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            ++    +  ++ IE IQ+ VE  LM+S +  + R Y+ YR +R   R   +       
Sbjct: 51  NIVNELANDTVLTIEKIQETVENVLMKSEYPDVARAYIEYRHDRDSERDNITDMTKSVE 109


>gi|257867913|ref|ZP_05647566.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257874242|ref|ZP_05653895.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257801996|gb|EEV30899.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257808406|gb|EEV37228.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 730

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDII 72
             P         ++ ++++KR+G +  FD  KI  A++KA   + G+       ++ +I+
Sbjct: 5   RNPEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKINGELSPIDHEKITEIV 64

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++  +   R   +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 65  DSVDHEIAERFRTN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 116


>gi|238799269|ref|ZP_04642714.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
 gi|238716873|gb|EEQ08744.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
          Length = 712

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|329768462|ref|ZP_08259953.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
 gi|328836795|gb|EGF86445.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
          Length = 727

 Score = 98.7 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                 +  + VIKR+G +  FD  KI +AI KA  +V GK    S+ +  I+ N+  + 
Sbjct: 12  AKVDSLMNNLLVIKRDGRIVKFDAEKIYKAIEKAIHSVFGKNH--SVNIDGIVDNVIIEI 69

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             R   +      + I ++Q+ VE +L+  G   I  EYV YR  R   R  
Sbjct: 70  GNRFKDN------IKIYELQNIVEHTLLTLGEEAIYEEYVSYRSMRDIERER 115



 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 21/121 (17%)

Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA---------C 170
           LY   ++ V +  ++          L ++  DG ++ F+++++   +E+A          
Sbjct: 6   LYSYTQAKVDSLMNN----------LLVIKRDGRIVKFDAEKIYKAIEKAIHSVFGKNHS 55

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
             +  +   +++ E      D +   +L+  +  +  TL E E  Y +  +   +  + R
Sbjct: 56  VNIDGIVDNVII-EIGNRFKDNIKIYELQNIVEHTLLTLGE-EAIYEEYVSYRSMRDIER 113

Query: 231 E 231
           E
Sbjct: 114 E 114


>gi|325570716|ref|ZP_08146442.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
 gi|325156562|gb|EGC68742.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
          Length = 731

 Score = 98.7 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDII 72
             P         ++ ++++KR+G +  FD  KI  A++KA   + G+       ++ +I+
Sbjct: 6   RNPEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKINGELSPIDHEKITEIV 65

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++  +   R   +      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 66  DSVDHEIAERFRTN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERS 117


>gi|319937925|ref|ZP_08012325.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
 gi|319806831|gb|EFW03470.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
          Length = 587

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVE----GKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++IKRNG +  FD  KI +AI+ A   +       G +R I  +   + L ++    L+
Sbjct: 17  MKIIKRNGSLEDFDRGKIEKAILGAMEDLGADYRNAGVARRISREVEREFLDKEAQETLI 76

Query: 85  QHNKSALI-----VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            H  +  +     V I+DI+D+VE  LM S    + R+Y+ YR ++   R    + KS
Sbjct: 77  AHKDNPNLLLHYQVPIKDIEDRVEEKLMGSHCKDVARQYIRYRYKKKQQRDKYENIKS 134


>gi|262363220|gb|ACY59941.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           D106004]
          Length = 712

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|22124647|ref|NP_668070.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45440484|ref|NP_992023.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594871|ref|YP_069062.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808947|ref|YP_652863.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|108810799|ref|YP_646566.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|145600518|ref|YP_001164594.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|153949602|ref|YP_001402510.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997506|ref|ZP_02022606.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|162421738|ref|YP_001608327.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Angola]
 gi|165925838|ref|ZP_02221670.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936718|ref|ZP_02225285.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010082|ref|ZP_02230980.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214312|ref|ZP_02240347.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398618|ref|ZP_02304142.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420614|ref|ZP_02312367.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423681|ref|ZP_02315434.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469609|ref|ZP_02334313.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           FV-1]
 gi|170025906|ref|YP_001722411.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893881|ref|YP_001870993.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930468|ref|YP_002348343.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           CO92]
 gi|229839102|ref|ZP_04459261.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896590|ref|ZP_04511757.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|229899665|ref|ZP_04514806.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901001|ref|ZP_04516125.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|270489180|ref|ZP_06206254.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294505158|ref|YP_003569220.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|21957455|gb|AAM84321.1|AE013675_1 anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45435341|gb|AAS60900.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51588153|emb|CAH19759.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774447|gb|ABG16966.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Yersinia pestis
           Nepal516]
 gi|108780860|gb|ABG14918.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|115349079|emb|CAL22042.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CO92]
 gi|145212214|gb|ABP41621.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|149289143|gb|EDM39223.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|152961097|gb|ABS48558.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354553|gb|ABX88501.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Angola]
 gi|165915367|gb|EDR33977.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922450|gb|EDR39627.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990989|gb|EDR43290.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204544|gb|EDR49024.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961420|gb|EDR57441.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051122|gb|EDR62530.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057851|gb|EDR67597.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752440|gb|ACA69958.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696907|gb|ACC87536.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229682340|gb|EEO78432.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|229687157|gb|EEO79232.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695468|gb|EEO85515.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700368|gb|EEO88400.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|262367151|gb|ACY63708.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           D182038]
 gi|270337684|gb|EFA48461.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294355617|gb|ADE65958.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|320016657|gb|ADW00229.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 712

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|315633672|ref|ZP_07888962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
 gi|315477714|gb|EFU68456.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
          Length = 708

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV+       I+ +    ++ ++    +  H++  
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAVD-------IQDERFCHDIAQKVSNDIFAHHQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S    +  
Sbjct: 59  --IDISHIQKIVENHLMASQYPQIARAYIEYRHERDMAREKRSQLTKEIE 106


>gi|241889296|ref|ZP_04776599.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
 gi|241864133|gb|EER68512.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
          Length = 727

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                  K + VIKR+G +  FD  KI +AI KA  +V GK    S+ +  I+ N+  + 
Sbjct: 12  AKVDSLTKNLLVIKRDGRIVRFDTEKIYKAIEKAVHSVFGKNH--SVNINGIVDNVILEI 69

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             R          + I ++Q+ VE +L+  G   I  EYV YR  R   R  
Sbjct: 70  ANRFK------GNIKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMRDIERER 115


>gi|251791877|ref|YP_003006597.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533264|gb|ACS96510.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 708

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I+ +    ++ ++    +  H++  
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAVG-------IQDERFCHDIAQKVSNDIFAHHQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S
Sbjct: 59  --IDISHIQKIVENHLMASRYPQIARAYIEYRHERDMAREKRS 99


>gi|281490762|ref|YP_003352742.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374531|gb|ADA64052.1| Anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 747

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ + 
Sbjct: 11  TLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF 63

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   V I +IQ  VE  L++SG  ++  EY+ YR  R   R   +           
Sbjct: 64  TRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATDINFTIE---- 117

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 118 -KLINRDQTVVNENANK 133


>gi|156932481|ref|YP_001436397.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156530735|gb|ABU75561.1| hypothetical protein ESA_00260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 711

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+ ++I  AI++A  A     A     V +I        V+  +QH + 
Sbjct: 4   HVVKRDGCKVPFNSTRIREAILRAAQAAGVDDADYCATVAEI--------VSSQMQHRRE 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 56  ---VDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKE 101


>gi|326405849|gb|ADZ62920.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 747

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ + 
Sbjct: 11  TLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF 63

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   V I +IQ  VE  L++SG  ++  EY+ YR  R   R   +           
Sbjct: 64  TRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATDINFTIE---- 117

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 118 -KLINRDQTVVNENANK 133


>gi|116511094|ref|YP_808310.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116106748|gb|ABJ71888.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 747

 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ + 
Sbjct: 11  TLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF 63

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   V I +IQ  VE  L++SG  ++  EY+ YR  R   R   +           
Sbjct: 64  TRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATDINFTIE---- 117

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 118 -KLINRDQTVVNENANK 133


>gi|315301268|ref|ZP_07872490.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
 gi|313630362|gb|EFR98273.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
          Length = 598

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            ++  E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------ESFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|15672255|ref|NP_266429.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|12723134|gb|AAK04371.1|AE006264_10 anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 747

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ + 
Sbjct: 11  TLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIF 63

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   V I +IQ  VE  L++SG  ++  EY+ YR  R   R   +           
Sbjct: 64  TRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATDINFTIE---- 117

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 118 -KLINRDQTVVNENANK 133


>gi|152979072|ref|YP_001344701.1| anaerobic ribonucleoside triphosphate reductase [Actinobacillus
           succinogenes 130Z]
 gi|150840795|gb|ABR74766.1| anaerobic ribonucleoside-triphosphate reductase [Actinobacillus
           succinogenes 130Z]
          Length = 708

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G  +SF+  +I  AI KA  AV+       I+ +     + +Q    + +
Sbjct: 1   MTSFYVIKRDGSRSSFEIQRIINAIKKAAKAVD-------IQDERYYHQIGQQACDEIFE 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H ++   + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 54  HYQNE--IDISHIQRIVENKLMASSYPQVARAYIEYRHDRDSAREKRSKLTKEIE 106


>gi|228477618|ref|ZP_04062251.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250762|gb|EEK09960.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 112

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     +    +  + K +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDTWRQNLAQVTKKVVLDLQDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM++G   I   Y+ YR +R   R 
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLERN 96


>gi|259047272|ref|ZP_05737673.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
 gi|259036048|gb|EEW37303.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
          Length = 732

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTR 82
           +++K + V KR+G    F   KI RAI KA   + G+  A R   +  I+  + ++   R
Sbjct: 4   QELKTLLVTKRDGREVEFQKEKIERAIFKAETELNGEMDAKREAELNRIVDEVLQEISRR 63

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +       + I +IQ  +E  L++ G  ++ + Y+ YR +R   R  Q   +
Sbjct: 64  FSE------TIQIYEIQSIIEHFLIEDGESELAQAYISYRVDRDLRRKNQLDFQ 111


>gi|253991475|ref|YP_003042831.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638353|emb|CAR66975.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782925|emb|CAQ86090.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica]
          Length = 712

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A          +V  ++  L             + 
Sbjct: 5   VIKRDGHQVPFDGERIRDAVKRAASAAGVTDDEYCAQVASVVTQL-----------MTNH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ+ VE  LM   +  + R Y+ YR +R   R   SH   +
Sbjct: 54  SQVDIRDIQNAVENQLMAGNYKHLARIYIEYRHDRDIARELHSHLNQE 101


>gi|227533385|ref|ZP_03963434.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227188951|gb|EEI69018.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 727

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R      
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDD-- 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVN-----YNVSRLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDESVVNENANKDSRVFS 133


>gi|191636946|ref|YP_001986112.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei BL23]
 gi|190711248|emb|CAQ65254.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           casei BL23]
 gi|327380973|gb|AEA52449.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei LC2W]
 gi|327384149|gb|AEA55623.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei BD-II]
          Length = 727

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R      
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDD-- 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVN-----YNVSRLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDESVVNENANKDSRVFS 133


>gi|257869794|ref|ZP_05649447.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
 gi|257803958|gb|EEV32780.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
          Length = 732

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRL 83
           ++  ++++KR+G +  FD  KI  A++KA   V+G+       R+ +I++ +  +   R 
Sbjct: 16  QLTQLKIVKRDGRLVDFDDQKIYDALVKAQRKVKGELSPLDHERILEIVEGIDHEIAERF 75

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++      V I +IQ+ VE  L+    + +  EY+ YR  R   R+
Sbjct: 76  TKN------VKIYEIQNIVEHILLAKNEYALAEEYINYRTRRDFERS 116


>gi|317152686|ref|YP_004120734.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942937|gb|ADU61988.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 686

 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 41/202 (20%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             Q+IKR+G + ++   +I  AI KA      K          +   L  +   +L    
Sbjct: 2   PTQIIKRDGRIETWSTKRIGVAIFKALKGSGIKDPM-------LADRLAGKVEAKLA--- 51

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                   E +QD V+  LM++  +K+   Y+LYRE+R ++R                  
Sbjct: 52  -DMDTPEQEQVQDMVQQVLMEARLYKVAERYILYREKRRELRTQDQSFMDIV-------- 102

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
               G   S+               L ++  ++  +    + + GL    L  A    +R
Sbjct: 103 ----GVTESY---------------LDNLDWRVSENSNMVHSFQGLI---LHMAGSVQAR 140

Query: 208 TLIEKEPNYAKVTARFLLEKLR 229
            ++EK P   ++        + 
Sbjct: 141 YVLEKYPEEVRMAHNHGYFHIH 162


>gi|312278622|gb|ADQ63279.1| Anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           thermophilus ND03]
          Length = 112

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDSWRQNLAQVTKKVALDLQDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM++G   I   Y+ YR +R   R 
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLERN 96


>gi|260582007|ref|ZP_05849802.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
 gi|260094897|gb|EEW78790.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
          Length = 707

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G  T F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRTEFEIQRIINAIKKAANAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|239630945|ref|ZP_04673976.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065267|ref|YP_003787290.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
 gi|239527228|gb|EEQ66229.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300437674|gb|ADK17440.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
          Length = 727

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G +  FD SKIS AI KA  +V     S  + +  +   +T +   R      
Sbjct: 6   TQIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDD-- 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVN-----YNVSRLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDESVVNENANKDSRVFS 133


>gi|313635001|gb|EFS01380.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL N1-067]
          Length = 716

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|238750152|ref|ZP_04611655.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
 gi|238711696|gb|EEQ03911.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
          Length = 712

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV          V  ++            Q  ++ 
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDTDYCATVARVVA-----------QTMENQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  AKVDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|52548444|gb|AAU82293.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos13E1]
          Length = 699

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  FD  KI+        A+   GA+       I + LT + +  L Q    
Sbjct: 4   KIRKRDGRVVRFDSKKIA-------DAIAKAGAATGEFDHKIARALTLKVLN-LAQQAIP 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKI 147
             I  +E IQD VE  L+ S + K  R Y++YRE+ + +R   A++          KL  
Sbjct: 56  HRIPTVEGIQDVVEEVLLSSPYRKTARAYIIYREQHAGIREITAKADVDMVDQYLEKLDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE 167
            +++ + ++F+ + L   + 
Sbjct: 116 QVNENSNMTFSLQGLNNYIS 135


>gi|313639674|gb|EFS04463.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL S4-171]
          Length = 716

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|312864356|ref|ZP_07724589.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
 gi|311100077|gb|EFQ58288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
          Length = 735

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 6/105 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + VIKR+G   SFD  KI +A++KA   V        ++++ I   +  +   R +  
Sbjct: 13  PEITVIKRDGRHVSFDSDKIYQALIKASQNVSHMSPLMEVKLKGICDRIVAEIANRFMAD 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 + I +IQ  VE  L+ +  + I +EY+ YR +R   R+ 
Sbjct: 73  ------IKIYEIQSIVEHELLNANEYAIAQEYINYRTQRDFARSQ 111


>gi|289433629|ref|YP_003463501.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169873|emb|CBH26413.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 716

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+I+ N+ +
Sbjct: 115 DKTVINENANK 125


>gi|319896488|ref|YP_004134681.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
 gi|317431990|emb|CBY80338.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
          Length = 707

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASHYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|197287263|ref|YP_002153135.1| anaerobic ribonucleoside triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227357040|ref|ZP_03841410.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
 gi|194684750|emb|CAR46763.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227162732|gb|EEI47695.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
          Length = 712

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A  A +               +  E     + Q     
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRAAEACQITD-----------DDYCEFVAQSVSQSLAGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   H  I R Y+ YR +R   R  +     +
Sbjct: 54  SNVDIREIQDAVENQLMAGEHKDIARAYIEYRHDRDVAREQRGRLTQE 101


>gi|170718686|ref|YP_001783879.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           2336]
 gi|168826815|gb|ACA32186.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus somnus
           2336]
          Length = 708

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV  +              + +     +  H +  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVNIQDEM-------FCHKIGQLVCDNIFAHYQKE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+   +  
Sbjct: 59  --IDISHIQEIVENHLMASKYPQVARAYIEYRHERDLAREKRSNLTKEIE 106


>gi|145633716|ref|ZP_01789442.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145635474|ref|ZP_01791174.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229845475|ref|ZP_04465604.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
 gi|229846995|ref|ZP_04467101.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|144985476|gb|EDJ92297.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145267239|gb|EDK07243.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229810079|gb|EEP45799.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|229811578|gb|EEP47278.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
          Length = 707

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQDEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|312863781|ref|ZP_07724019.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|322373150|ref|ZP_08047686.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322516549|ref|ZP_08069465.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
 gi|311101317|gb|EFQ59522.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|321278192|gb|EFX55261.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322124937|gb|EFX96357.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
          Length = 112

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     +    +  + + +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVIDDAWRQNLAQVTRKVVLDLQDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM++G   I   Y+ YR +R   R 
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLERN 96


>gi|148825645|ref|YP_001290398.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
 gi|148715805|gb|ABQ98015.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
          Length = 708

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQDEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|301168668|emb|CBW28259.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 10810]
          Length = 707

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV         ++        ++    +  
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVNISDEFYCHQIG-------QEVGNEIFI 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H++    + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 54  HHQGE--IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|46578715|ref|YP_009523.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120603720|ref|YP_968120.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46448127|gb|AAS94782.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563949|gb|ABM29693.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311232588|gb|ADP85442.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 681

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I+ AI+KA  A   K    S R+   ++                
Sbjct: 4   QIRKRDGRLETWSTDRIAEAILKALKANGIKDPLLSKRLARKVEAKLHDV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +QD VE  LM+S  + + R Y++YRE+R ++R  ++           
Sbjct: 54  -EIPEQEQVQDNVEQVLMESRLYAVARRYIVYREKRRELREHKAAFLDITETIET 107


>gi|145630624|ref|ZP_01786403.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
 gi|144983750|gb|EDJ91200.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
          Length = 707

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MGNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|113461609|ref|YP_719678.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           129PT]
 gi|112823652|gb|ABI25741.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Haemophilus
           somnus 129PT]
          Length = 708

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV  +              + +     +  H++  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVNIQDEM-------FCHKIGQLVCDDIFAHHQKE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+   +  
Sbjct: 59  --IDISRIQEIVENHLMGSQYPQVARAYIEYRHERDLAREKRSNLTKEIE 106


>gi|300853392|ref|YP_003778376.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433507|gb|ADK13274.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 701

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KI+ AI  +    E     +     D+ + +TE      L+   
Sbjct: 2   LHVVKRDGRRVPFDSIKITNAIKGSCD--EIGFDLKESEFIDLTQKVTENIENLNLKE-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V++EDIQ+ VE  LM+ G+ KI   Y  YR ER+D+R  +S
Sbjct: 58  ----VNVEDIQNIVEEVLMKKGYVKIGLAYSNYRRERNDIREIKS 98


>gi|238760373|ref|ZP_04621514.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
 gi|238701433|gb|EEP94009.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
          Length = 712

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV+   A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVDVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  + H   +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGHLNQE 101


>gi|255018949|ref|ZP_05291075.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL F2-515]
          Length = 134

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 31/157 (19%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L          
Sbjct: 2   GLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL---------- 51

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           N+   P         A+++D    +    RRQ+ +DQ+ S N Y
Sbjct: 52  ----------------NLSTYP----YYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFY 91

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +       KL  ++  AW  GLKTTYY+RS      E
Sbjct: 92  VPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEE 128


>gi|229495535|ref|ZP_04389268.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317518|gb|EEN83418.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 801

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F+  KI  AI KA+ A  G        V  I+  +        +      
Sbjct: 8   ILKRDGSRQLFEAEKIRSAIYKAYRA--GGVRPDPSSVDVIVARIES------VARAHKE 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE +LM +    I ++Y++YRE R+  R  ++  K       K++    
Sbjct: 60  GALAVEDIQDMVEQALMAADPF-IAKKYIIYREWRTVERDKRTRLKHTMDGIVKIEKNDT 118

Query: 151 D 151
           +
Sbjct: 119 N 119


>gi|269795447|ref|YP_003314902.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
 gi|269097632|gb|ACZ22068.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 754

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  +DP+++ RA+  AF  V       +  V+  +  LTEQ    + +     
Sbjct: 32  VLKRDGRVAEYDPARVERALTSAFADVH---VGPAQLVRPAVLGLTEQVGAEIARRF--T 86

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I +IQ+ VE  L++S H+++   Y+ YR  R   R   +    
Sbjct: 87  DTVQIYEIQNVVEHVLLESRHYEVAEAYIAYRVRRDVARNRTTDVNH 133


>gi|260892783|ref|YP_003238880.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260864924|gb|ACX52030.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 695

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V  FD ++I+       +         ++   ++ + + E+            
Sbjct: 7   IVKRDGRVVPFDAARITV-----AVTKAAAATGEAVDTGEVTRCVLEELA------RSGV 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            +  +E +QD VE  LM+ G+++  + Y+LYR++R  +R  +
Sbjct: 56  TVPTVEQVQDLVETCLMRLGYYRTAKAYILYRDQRRQIREMK 97


>gi|68248626|ref|YP_247738.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 86-028NP]
 gi|68056825|gb|AAX87078.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 86-028NP]
          Length = 707

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKVVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|332702573|ref|ZP_08422661.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552722|gb|EGJ49766.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 685

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +Q+ KR+G + ++   +I  AI+KA  A   K    S R       L  +   +L   +
Sbjct: 2   PLQIRKRDGRLETWSTDRIGEAILKALKASGIKDPILSKR-------LACKVEKKLEGLD 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +      E IQD VE  LM++  + + ++YVLYRE+R ++RA +           +
Sbjct: 55  VAEQ----EQIQDTVELVLMENRLYDVAKKYVLYREKRRELRAHKQAYLDITETIDQ 107


>gi|55821294|ref|YP_139736.1| hypothetical protein stu1289 [Streptococcus thermophilus LMG 18311]
 gi|55823206|ref|YP_141647.1| hypothetical protein str1289 [Streptococcus thermophilus CNRZ1066]
 gi|55737279|gb|AAV60921.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739191|gb|AAV62832.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 112

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDSWRQNLAQVTKKVALDLKDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM++G   I   Y+ YR +R   R 
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLERN 96


>gi|29566069|ref|NP_817639.1| gp50 [Mycobacterium phage Bxz2]
 gi|34925222|sp|Q857H2|VG50_BPMB2 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|29424794|gb|AAN01804.1| gp50 [Mycobacterium phage Bxz2]
          Length = 672

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 90/505 (17%), Positives = 161/505 (31%), Gaps = 118/505 (23%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC--AYLETWHIDV 459
            D + VR  GA +    G + G +P  ++  D    +++     G +   A +E  H   
Sbjct: 196 YDVSRVRQFGAKLKTFGGTASGPLPLARMLIDVCEILSEIATEGGQLTGIAAMEIDHA-- 253

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANW----IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
                 +       RR+  M+  +W    + +    +    + WT     EV D      
Sbjct: 254 ----IAQCVVAGGVRRSARMSMMHWKDPQVYEFLRIKQDTGSHWTTNISLEVDD------ 303

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            EF +A E      +              + R++   +   G P           S   +
Sbjct: 304 -EFWVAVEEGWAGPNNR------------ILRELTEGMVANGEPGFWN-------SSLSN 343

Query: 576 VGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRV 631
           VG    V  +N C EITL         CNLG +NL A    N  +D   L    R   R 
Sbjct: 344 VGEPNEVVCTNPCGEITLEPWEP----CNLGHVNLAAFAHGNGSYDITGLYRAHRLVTRF 399

Query: 632 LDNVIDINCHTI--EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA----SPEAVEIADE 685
           L   +      +   K+++    +R IG+G +G  S L L    Y+    + E   +   
Sbjct: 400 L---MRATFSPVADPKSREVLDRNRRIGVGHLGVASFLALCGWKYSEARTNEEFKWLLRS 456

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E +   A   + +L                                         R+P
Sbjct: 457 LAEEVDHAATQFAHQL-----------------------------------------RIP 475

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
               K+ V   G             TIA + GVS+ I P +   +++           + 
Sbjct: 476 VPVKKRTVAPTG-------------TIAKMPGVSEGIHPIFSRYFIRRVRLSMSDPDQTR 522

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH--------ATAFEIDPMWLI 857
           ++ +  ++    E  +        SI   + +  ++ + +         +A ++    L+
Sbjct: 523 MLADYGRQGYEVEDDLYAKFTGVVSIPTQDTLVAEVIEHYGQDSESLVESAADLSLNELL 582

Query: 858 ESASRRQK-WIDQAQSLNLYLDEPS 881
              +  Q  W D A S    +D  +
Sbjct: 583 GFQALYQTIWADNAVSFTANVDPET 607


>gi|116493703|ref|YP_805437.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei ATCC 334]
 gi|116103853|gb|ABJ68995.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           casei ATCC 334]
          Length = 727

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            Q+ KR+G + +FD SKIS AI KA  +V     S  + +  +   +T +   R      
Sbjct: 6   TQIKKRDGRIVNFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDD-- 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I +IQ  VE +L+ +  +     Y  YR +R   R  +             +++
Sbjct: 64  ----VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVN-----YNVSRLV 114

Query: 149 MDDGTLISFNSKRLEMIVE 167
             D ++++ N+ +   +  
Sbjct: 115 NRDESVVNENANKDSRVFS 133


>gi|24379431|ref|NP_721386.1| putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|290580558|ref|YP_003484950.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
 gi|24377364|gb|AAN58692.1|AE014938_8 putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|254997457|dbj|BAH88058.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
          Length = 122

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +AI+ A   V     +    ++  +  +T++ V  L +   
Sbjct: 11  MQVIKRSGQVVDFDPDKIYQAILGAAQTVYVLDDA----LRQDLAQVTKKVVVDLEE--A 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ QVE  L+ +G+  I   Y+ YR +R   R       +      ++K
Sbjct: 65  QTERPTISMIQSQVEHRLLDAGYITIAEHYISYRLQRDLERNGYDDHINVHLHFEQVK 122


>gi|69246407|ref|ZP_00603929.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257879321|ref|ZP_05658974.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257881863|ref|ZP_05661516.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257890147|ref|ZP_05669800.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257893475|ref|ZP_05673128.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258615727|ref|ZP_05713497.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecium DO]
 gi|260558763|ref|ZP_05830952.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|261207358|ref|ZP_05922045.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289566865|ref|ZP_06447274.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|293550613|ref|ZP_06673281.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|293559577|ref|ZP_06676111.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|293567572|ref|ZP_06678916.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|294616063|ref|ZP_06695880.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|294617660|ref|ZP_06697287.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|294621765|ref|ZP_06700925.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|314937917|ref|ZP_07845233.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|314941408|ref|ZP_07848301.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|314948537|ref|ZP_07851917.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
 gi|314951292|ref|ZP_07854346.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|314992877|ref|ZP_07858278.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|314998081|ref|ZP_07862969.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|68195279|gb|EAN09731.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257813549|gb|EEV42307.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817521|gb|EEV44849.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257826507|gb|EEV53133.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257829854|gb|EEV56461.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260075222|gb|EEW63535.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|260078418|gb|EEW66122.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289161353|gb|EFD09244.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|291589673|gb|EFF21477.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|291591080|gb|EFF22772.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|291596067|gb|EFF27333.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|291598652|gb|EFF29709.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|291603234|gb|EFF33418.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|291606453|gb|EFF35853.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|313587923|gb|EFR66768.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|313592681|gb|EFR71526.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|313596509|gb|EFR75354.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|313599831|gb|EFR78674.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|313642775|gb|EFS07355.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|313645034|gb|EFS09614.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
          Length = 729

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +    
Sbjct: 16  ETSQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRF 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             N     V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 76  AEN-----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|257885069|ref|ZP_05664722.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257820921|gb|EEV48055.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 729

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L  Q +    
Sbjct: 16  ETSQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLVVQEIKSRF 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             N     V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 76  AEN-----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|258404206|ref|YP_003196948.1| anaerobic ribonucleoside triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796433|gb|ACV67370.1| anaerobic ribonucleoside-triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
          Length = 697

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           ++   P  +   P K     + KR+G + ++   +I  AI+KA  A   K    + R+  
Sbjct: 4   EDRPVPRSSTTNPPKY----IRKRDGRLETWALDRIGEAILKALKASGVKDPLLANRLAR 59

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++   E                  E +QD VE  LM+S  +++ R Y++YRE+R  +R+
Sbjct: 60  KVEQKLEGI-----------ETPEQEQVQDMVELVLMESRLYQVARRYIVYREKRRQLRS 108

Query: 131 AQSHSKSDAPIAPKLKIMMDD 151
            Q              +  +D
Sbjct: 109 QQEAFLDIRETIDS-YVNKED 128


>gi|261868776|ref|YP_003256698.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414108|gb|ACX83479.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 708

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV          V        ++    +  H +  
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAVGITDDRYCYAV-------AQKVSDDIFSHYQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQLTREIE 106


>gi|319775018|ref|YP_004137506.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|329123079|ref|ZP_08251649.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
 gi|317449609|emb|CBY85814.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|327471634|gb|EGF17076.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
          Length = 707

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G  + F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRSEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|293390629|ref|ZP_06634963.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951163|gb|EFE01282.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 708

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV          V        ++    +  H +  
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAVGITDDRYCYAV-------AQKVSDDIFSHYQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQLTREIE 106


>gi|332290045|ref|YP_004420897.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
 gi|330432941|gb|AEC18000.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
          Length = 726

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD   I  A+ KA  AV  +            + L+++    +L  N   
Sbjct: 24  VIKRDGSKAQFDAQFILNAMKKAAQAVNIEDDGYF-------EQLSQEISFEIL--NGVN 74

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             + I DIQ  VE  LMQS + ++ R Y+ YR +R   R  +S    +   +  +  +++
Sbjct: 75  QQIDIADIQQVVENHLMQSRYPQVARAYIEYRHDRDKEREKRSQLTQEIEGLIEQNNVLL 134

Query: 150 DD 151
            +
Sbjct: 135 MN 136


>gi|187777315|ref|ZP_02993788.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
 gi|187774243|gb|EDU38045.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
          Length = 713

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK  
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQRVIKKIEDSNKKE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 58  --ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|322388113|ref|ZP_08061719.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|322392172|ref|ZP_08065634.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
 gi|321141134|gb|EFX36633.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|321145072|gb|EFX40471.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
          Length = 112

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGQVADFDPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|238755179|ref|ZP_04616525.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
 gi|238706626|gb|EEP98997.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
          Length = 712

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV+   A         +  +  Q + +L Q     
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVDVVDADYCA----TVARVVAQKMEKLAQ----- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIREIQEAVENQLMAGDYKQLARAYIEYRHDRDVSRELRGRLNQE 101


>gi|90408371|ref|ZP_01216534.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
 gi|90310534|gb|EAS38656.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
          Length = 705

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 12/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I+ AI+KA         S + R +D+      + V   LQ  K  
Sbjct: 5   VIKRDGSQVPFNALRIAEAILKA---------SGAARCKDVDAFAIAKEVELRLQGQKE- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I  IQD VE SLM+SGH ++ R Y+ YR +R   R  +S   S+  
Sbjct: 55  --VDIHHIQDAVEASLMKSGHIELARVYIEYRHDRDIARERKSQLNSEIH 102


>gi|260599405|ref|YP_003211976.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           turicensis z3032]
 gi|260218582|emb|CBA33838.1| Anaerobic ribonucleoside-triphosphate reductase [Cronobacter
           turicensis z3032]
          Length = 711

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+ ++I  AI++A  A     A     V +I+               + 
Sbjct: 4   HVVKRDGCKVPFNSARIHEAILRAAQAAGVDDADYCATVAEIVS-----------SQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 53  RREVDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKE 101


>gi|168187697|ref|ZP_02622332.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294428|gb|EDS76561.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 703

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD   I+ AI     A E   A +   V ++ + + EQ   R  +   
Sbjct: 2   LYVVKRDGRRVPFDSINITNAIK--GSADEIAFALKESEVIELTQKVIEQIELRDYKE-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH  +
Sbjct: 58  ----ISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSHLMT 102


>gi|168492156|ref|ZP_02716299.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573603|gb|EDT94131.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 735

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLDDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  +++  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYELAEEYITYRTQRDFERS 109



 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLDDLTERIITEI 64

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +     G+   +++  +        E E     +T R
Sbjct: 65  HSRFPQGIKIYEIQNIVEHELLEAKEYELAEEYITYR 101


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   ++KR+     F   KI+ AI+KA  A+E  G   + R+ D++ +  ++      +
Sbjct: 1   MEITHIVKRDFQTKPFHQEKITSAILKAMTAIEHGGPEDAQRISDMVYSDLKKR-----K 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHH-KITREYVLYREERSDVRAAQ 132
              ++ I  IE IQD VE  LM S     + + Y+LYR+E++  R   
Sbjct: 56  ELDASYIPTIEQIQDLVERKLMLSEEFVDVAKTYILYRDEQAQKRKTN 103


>gi|54302122|ref|YP_132115.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum SS9]
 gi|46915543|emb|CAG22315.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Photobacterium profundum SS9]
          Length = 711

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+         V+ + +         +L    SA
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVDEVD------VEAMNEAYAASVADGVLSQFMSA 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKS 101


>gi|323698640|ref|ZP_08110552.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323458572|gb|EGB14437.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 699

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 41/200 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G + ++   +I  AI KA      K              L ++   ++ +  K 
Sbjct: 4   KILKRDGCIETWSTKRIGNAIFKALKGSGIKDPL-----------LADRLAGKVEKKLKD 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I   E +QD V+  LM++   K+   Y++YRE+R ++R+        A +        
Sbjct: 53  VDIPEQEQVQDMVQEVLMEARLFKVAERYIIYREKRRELRSQDEAFLDIAQV-------- 104

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG                    L +V  ++  +    + Y GL    L  A    +R +
Sbjct: 105 TDG-------------------YLNNVDWRVNENSNMTHSYQGLI---LHMAGAVQARYM 142

Query: 210 IEKEPNYAKVTARFLLEKLR 229
           +EK P   ++        + 
Sbjct: 143 LEKYPEEVRLAHTHGYFHIH 162


>gi|323700675|ref|ZP_08112587.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323460607|gb|EGB16472.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 685

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA  A   K              L  +   ++ +    
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKALSASGIKDPL-----------LARRLARKVEKKLDG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +Q+ VE  LM+   + I ++Y+LYRE+R  +R+ ++       +   
Sbjct: 53  MDIPEQEHVQNMVEQVLMEGRQYDIAKKYILYREKRRQLRSQKAAYLDIKDVIDT 107


>gi|331270949|ref|YP_004385660.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329127341|gb|AEB77285.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 706

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G    F+ ++I  AI  A     +G     S+ + + I  +             +
Sbjct: 5   VIKRDGREVDFNINRIVNAIELAMKDTKQGVDKELSVHIANDISKI-------------N 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQD VE  LM S    + +EY+ YR ER+  R ++S+      +     +  
Sbjct: 52  KDKMTVEEIQDLVEDKLMDS-KKDVAKEYIKYRNERTKERDSKSNVFE--KMQDTFDMKS 108

Query: 150 DDGT 153
           +D  
Sbjct: 109 EDNR 112


>gi|194397878|ref|YP_002036904.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae G54]
 gi|194357545|gb|ACF55993.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae G54]
          Length = 735

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALYKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALYKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|309972792|gb|ADO95993.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2846]
          Length = 707

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F   +I  AI KA  AV         ++        ++    +  
Sbjct: 1   MSNFGVIKRDGSRAEFKIQRIINAIKKAASAVNISDEFYCHQIG-------QEVGNEIFI 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H++    + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 54  HHQGE--IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|309799048|ref|ZP_07693301.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
 gi|308117283|gb|EFO54706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
          Length = 560

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V         R+  +++ + E+       H++  
Sbjct: 16  VEKRDGRRVVFDVEKIEKALHKAAEKVMDVTPLVEKRLSTLVERIVEEI------HSRFP 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 70  QGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +     +P L +   DG  + F+ +++E  + +A   + DV+           + ++ E 
Sbjct: 5   EEKTAPSPTLFVEKRDGRRVVFDVEKIEKALHKAAEKVMDVTPLVEKRLSTLVERIVEEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|238793046|ref|ZP_04636675.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
 gi|238727646|gb|EEQ19171.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
          Length = 712

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|168177426|ref|ZP_02612090.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
 gi|182670415|gb|EDT82389.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|153938050|ref|YP_001389457.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|152933946|gb|ABS39444.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|295317561|gb|ADF97938.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. 230613]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|227550411|ref|ZP_03980460.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257897185|ref|ZP_05676838.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
 gi|227180312|gb|EEI61284.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257833750|gb|EEV60171.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
          Length = 729

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           ++    PE  + ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L 
Sbjct: 9   TVVTQQPEAHQ-MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLV 67

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            Q +      N     V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 68  VQEIKSRFAEN-----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|90413429|ref|ZP_01221421.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
 gi|90325517|gb|EAS41994.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
          Length = 711

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+         V+ + +         +L    S 
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVDEVD------VEAMSEAYAASVADGVLSQFMSV 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKS 101


>gi|148378101|ref|YP_001252642.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933790|ref|YP_001382500.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935349|ref|YP_001386052.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. Hall]
 gi|148287585|emb|CAL81650.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929834|gb|ABS35334.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931263|gb|ABS36762.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. Hall]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|170756294|ref|YP_001779720.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
 gi|169121506|gb|ACA45342.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|168188057|ref|ZP_02622692.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294101|gb|EDS76234.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 705

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G    F+ ++I  AI  A     +G     S+ + + I  +             +
Sbjct: 5   VIKRDGREVEFNINRIVNAIELAMKDTKQGIEKDLSVHIANDISEI-------------N 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQD VE  LM S    + +EY+ YR ER+  R ++S+      +     +  
Sbjct: 52  KDKITVEEIQDLVEDKLMDSR-KDVAKEYIKYRNERTKARDSKSNVFE--KMQDTFDMKS 108

Query: 150 DDGT 153
           +D  
Sbjct: 109 EDNR 112


>gi|257888440|ref|ZP_05668093.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257899183|ref|ZP_05678836.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|293572067|ref|ZP_06683078.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
 gi|257824494|gb|EEV51426.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257837095|gb|EEV62169.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|291607852|gb|EFF37163.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
          Length = 729

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           ++    PE  + ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L 
Sbjct: 9   TVVTQQPEAHQ-MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLV 67

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            Q +      N     V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 68  VQEIKSRFAEN-----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|170760773|ref|YP_001785422.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407762|gb|ACA56173.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  KE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|168182298|ref|ZP_02616962.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|237793411|ref|YP_002860963.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
 gi|182674680|gb|EDT86641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|229260713|gb|ACQ51746.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
          Length = 713

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEFDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  KE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|293379602|ref|ZP_06625739.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
 gi|292641751|gb|EFF59924.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
          Length = 729

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           ++    PE  + ++VIKR+G    FD  KI+ A++KA   + G  +  +     +I +L 
Sbjct: 9   TVVTQQPEAHQ-MKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIADLV 67

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            Q +      N     V I +IQ+ VE  L++   +++  EY+ YR +R   R+
Sbjct: 68  VQEIKSRFAEN-----VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARS 116


>gi|238787629|ref|ZP_04631427.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
 gi|238724416|gb|EEQ16058.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
          Length = 712

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|123440857|ref|YP_001004848.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087818|emb|CAL10604.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 712

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISREVRGRLNQE 101


>gi|293393112|ref|ZP_06637427.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
 gi|291424258|gb|EFE97472.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
          Length = 708

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    FD ++I +AI +A +AV    A     V  ++    EQ             
Sbjct: 2   IKRDGCQVPFDQARIGQAIERAALAVGVVDADYCATVARVVAQQMEQ-----------QQ 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  RVDIHDIQLAVENQLMAGPYKQLARAYIEYRHDRDVSRELRGRLNQE 97


>gi|307711059|ref|ZP_07647481.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307617021|gb|EFN96199.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
          Length = 735

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT + 
Sbjct: 10  TLPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIH 65

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                   V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 66  SRFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITTLPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|318607315|emb|CBY28813.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 712

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|329117224|ref|ZP_08245941.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
 gi|326907629|gb|EGE54543.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
          Length = 112

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  F+P KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFNPDKIYQAIIKAARTVYVIDET----WRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM +G   +   Y+ YR +R   R 
Sbjct: 57  EK--PTINMIQSLVENRLMDAGFINVAEHYISYRLQRDLERN 96


>gi|332202118|gb|EGJ16187.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41317]
          Length = 735

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLDDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLDDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|254520476|ref|ZP_05132532.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
 gi|226914225|gb|EEH99426.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
          Length = 705

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SF+  KI+ AI KA   +      + + + DI+K +               
Sbjct: 4   VVKRDGREVSFNSVKIATAIRKAGDEIGE--RLKEVELLDIVKKVINYIEET------GN 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E+IQ+ VE SL+ S +  I   Y  YR+ER+ VR  +S
Sbjct: 56  EKITVEEIQNLVEKSLIDSNYKNIKTAYSSYRKERTKVREIKS 98


>gi|152973118|ref|YP_001338264.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892730|ref|YP_002917464.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150957967|gb|ABR79997.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238545046|dbj|BAH61397.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 712

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F+  +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|307704058|ref|ZP_07640988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307622388|gb|EFO01395.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 735

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.3 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|282598656|ref|YP_003358753.1| gp50 [Mycobacterium phage Peaches]
 gi|255928183|gb|ACU41801.1| gp50 [Mycobacterium phage Peaches]
          Length = 677

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 102/609 (16%), Positives = 185/609 (30%), Gaps = 166/609 (27%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  +    + +   E   + +A++   +LS+ +     P    +              +
Sbjct: 130 PQELY----VHIVCDEEHPDYQAMKDAGVLSTEY----DPEWAGA------------FVI 169

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG----NDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
            D   G   AL +                 D + VR  GA +    G++ G +P  ++  
Sbjct: 170 EDSREGWAAALVDLIDTHYRDEVSHFQRVYDVSRVRPFGAKLKTFGGRASGPLPLARMLI 229

Query: 433 DTAVAVNQGGK--------------------------RKGAVCAYLETWHIDVEEFLDLR 466
           D    +++                             R+ A  + +      +EEF+  +
Sbjct: 230 DVCEVLSEIATVGGSLNGIAAMEIDHAIAQCVVAGGVRRSARMSMMHWQDPQIEEFVRCK 289

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           + TG         N +  + DLF           L  P++VS           +  + ++
Sbjct: 290 QETGKH----WTTNISVVVDDLFWTA--------LNMPNQVS---------IMVRDQAHK 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +  V                    G P   F D       + +   V  +N C 
Sbjct: 329 ALTWITDGMVA------------------NGEPG--FWDSSLSSQGEPN--EVVCTNPCG 366

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTI-- 643
           EITL         CNLG INL A   +N + D   L  + R   R L   I      +  
Sbjct: 367 EITLQEWEP----CNLGHINLAAFVKDNGKVDTIDLIRSHRLMARFL---IRATFSPVGD 419

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            K+++    +R IG+G +G  S L +                                  
Sbjct: 420 PKSREVLDRNRRIGVGHLGVASYLAMTGRR------------------------------ 449

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                       + +          L E+  E  + ++++    EL+  V          
Sbjct: 450 ------------YSKAPLDKHFRKTLRELAKE--VEQSAQQFSHELRIPVP------VKT 489

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             +APT TIA + GVS+ I P +   + +              + +L  +    E     
Sbjct: 490 RTVAPTGTIAKMPGVSEGIHPIFAKYFNRRIRFSKG----DAELEKLIDQGYDFEPCQYA 545

Query: 824 -------LKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLN 874
                  +   D  +   ++R   D ++I  +A ++    L+   +  Q  W D A S  
Sbjct: 546 QNTVVVTIPTKDTLVQEVVDRFGRDAEEIVESAEDLTLNQLLAFQAMYQMLWADNAVSFT 605

Query: 875 LYLDEPSGK 883
             +D    K
Sbjct: 606 ANVDPDRYK 614


>gi|294790367|ref|ZP_06755525.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
 gi|294458264|gb|EFG26617.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
          Length = 798

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  V+V KR+G V  FD   I  AI  AF AV+ +     +R   +I+ +T++  + +  
Sbjct: 17  IDSVKVEKRDGRVVPFDSVNIIHAIEAAFKAVDEEVGPEEVR---LIEQMTQRVASSITG 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                  V I+DIQ  VE  L+    + I + Y  YR ++   RA  S    
Sbjct: 74  RY--NGPVRIDDIQSLVEHELVNEHLYDIAKAYTSYRLDKDIKRAKASDVNE 123


>gi|307708055|ref|ZP_07644523.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
 gi|307615840|gb|EFN95045.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|251782435|ref|YP_002996737.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391064|dbj|BAH81523.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 118

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 7   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDT----WRQNLAQVTKKVVIDLEE--V 60

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    I  IQ  VE  LM +G+  I   Y+ YR +R   R 
Sbjct: 61  HAERPTINMIQSLVENRLMDAGYITIAEHYISYRLQRDLERN 102


>gi|145629056|ref|ZP_01784855.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.1-21]
 gi|144978559|gb|EDJ88282.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.1-21]
          Length = 231

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+G    F+  +I  AI KA  AV     S       I + +  +  TR   
Sbjct: 1   MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVN---ISDEFYCHQIGQEVGNEIFTR--- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 55  ---HQGEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|289168739|ref|YP_003447008.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
 gi|288908306|emb|CBJ23148.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
          Length = 737

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KI 180
                +    I P L +   DG  + F+  +++  + +A   + DV+           + 
Sbjct: 2   HMIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTER 61

Query: 181 VLSETYKNMYDGLSESDLET 200
           +++E +     G+   +++ 
Sbjct: 62  IVTEIHSRFPQGVKIYEIQN 81


>gi|317154199|ref|YP_004122247.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944450|gb|ADU63501.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 685

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA  A   K              L ++   ++ +    
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKALAASGIKDPL-----------LAKRLARKVEKKLDG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +Q+ VE  LM+S  + I ++Y+LYRE+R  +R+ ++       +   
Sbjct: 53  MEIPEQEHVQNTVEQILMESRQYDIAKKYILYREKRRQLRSQKAAYLDIKDVIDT 107


>gi|50119334|ref|YP_048501.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609860|emb|CAG73294.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 712

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATVACAVA-----------QQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIRDIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|301793476|emb|CBW35849.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV104]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|239909107|ref|YP_002955849.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798974|dbj|BAH77963.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 684

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A   +    + R+   ++   E+           
Sbjct: 4   QIRKRDGCLETWSSQRIAQAILKALKASGIQDPILAARLAGKVEGKLEEL---------G 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     A +   
Sbjct: 55  NDVPEQEHVQDAVELVLMESRLFAVARRYIVYREKRRELREQKAAFLDIADVIDT 109


>gi|307126423|ref|YP_003878454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|306483485|gb|ADM90354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|332076649|gb|EGI87111.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17545]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|149017891|ref|ZP_01834350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147931455|gb|EDK82433.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD +KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVNKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVNKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|148987939|ref|ZP_01819402.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926403|gb|EDK77476.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|15602805|ref|NP_245877.1| anaerobic ribonucleoside triphosphate reductase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721261|gb|AAK03024.1| NrdD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 713

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  AI KA  AV  +        +     + +Q    +    +  
Sbjct: 6   VIKRDGSRTGFEIQRIINAIKKAAQAVNIED-------ERYCHTMGQQVCNDIFTRYQQE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE +LM   + +I R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDISHIQKIVENTLMAGKYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|307709905|ref|ZP_07646352.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|307619276|gb|EFN98405.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPKG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPKGVKIYEIQN 79


>gi|182683182|ref|YP_001834929.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
 gi|182628516|gb|ACB89464.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
          Length = 737

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGIKIYEIQN 81


>gi|148983601|ref|ZP_01816920.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|148992779|ref|ZP_01822422.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|149011071|ref|ZP_01832376.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|168483839|ref|ZP_02708791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486030|ref|ZP_02710538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489680|ref|ZP_02713879.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|168493896|ref|ZP_02718039.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|169832955|ref|YP_001693735.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231107|ref|YP_002510259.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225853809|ref|YP_002735321.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225858057|ref|YP_002739567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225860244|ref|YP_002741753.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229095|ref|ZP_06962776.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255981|ref|ZP_06979567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|303259255|ref|ZP_07345233.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261010|ref|ZP_07346959.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263338|ref|ZP_07349261.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|303265503|ref|ZP_07351403.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|303267939|ref|ZP_07353741.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|147764707|gb|EDK71637.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147923748|gb|EDK74860.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147928505|gb|EDK79520.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995457|gb|ACA36069.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042826|gb|EDT50872.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570916|gb|EDT91444.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571822|gb|EDT92350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|183576223|gb|EDT96751.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|220673567|emb|CAR68053.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225721134|gb|ACO16988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225723312|gb|ACO19165.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225727716|gb|ACO23567.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|301799352|emb|CBW31887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae OXC141]
 gi|301801147|emb|CBW33820.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV200]
 gi|302637847|gb|EFL68333.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639673|gb|EFL70130.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642635|gb|EFL72980.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|302644943|gb|EFL75190.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|302647111|gb|EFL77335.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|327390622|gb|EGE88962.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA04375]
 gi|332075868|gb|EGI86335.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17570]
 gi|332077504|gb|EGI87965.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41301]
 gi|332203368|gb|EGJ17435.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47368]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|225855968|ref|YP_002737479.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae P1031]
 gi|225726017|gb|ACO21869.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae P1031]
          Length = 737

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGIKIYEIQN 81


>gi|148996624|ref|ZP_01824342.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168576370|ref|ZP_02722253.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|307066880|ref|YP_003875846.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|147757199|gb|EDK64238.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183577900|gb|EDT98428.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|306408417|gb|ADM83844.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|332204211|gb|EGJ18276.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47901]
          Length = 735

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|149005952|ref|ZP_01829681.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298502017|ref|YP_003723957.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147762308|gb|EDK69269.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298237612|gb|ADI68743.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 737

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KI 180
                +    I P L +   DG  + F+  +++  + +A   + DV+           + 
Sbjct: 2   HMIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTER 61

Query: 181 VLSETYKNMYDGLSESDLET 200
           +++E +     G+   +++ 
Sbjct: 62  IITEIHSRFPQGIKIYEIQN 81


>gi|227115429|ref|ZP_03829085.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 712

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATVACAVA-----------QQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|315280721|ref|ZP_07869539.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
 gi|313615632|gb|EFR88959.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
          Length = 603

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 16/138 (11%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E++   +VIKR+G   +FD  KI  A+  +  A+       S+  +  ++ +  + V+ L
Sbjct: 4   EQLNEQKVIKRDGRKANFDLIKIRNAVEASMKAI-------SLEDETFLEEILLEVVSEL 56

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +          
Sbjct: 57  ----PNKTDMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE--- 109

Query: 144 KLKIMMDDGTLISFNSKR 161
             K++  D T+++ N+ +
Sbjct: 110 --KLLQKDKTVVNENANK 125


>gi|313895284|ref|ZP_07828841.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976179|gb|EFR41637.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 754

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    V KR G    +D +KI  AI  A                  I+N+T    T    
Sbjct: 1   MAVTTVTKRAGHSVPYDRAKILNAIAAASK------EYAHPMTALEIENVTAAVETAFES 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             +    + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +
Sbjct: 55  RAE----ISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKHLMA 102


>gi|253686765|ref|YP_003015955.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753343|gb|ACT11419.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 712

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAAHAAGVNDADYCATVACAVA-----------QQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|292669384|ref|ZP_06602810.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
 gi|292649019|gb|EFF66991.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
          Length = 774

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    V KR G    +D +KI  AI  A              V  +     ++    +  
Sbjct: 21  MTVTTVTKRAGHAVPYDRAKILNAIAAASKE----------YVHPMTALEIDEVTAAVEA 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             ++   + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +
Sbjct: 71  SFENRAEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRLAQKHLMA 122


>gi|317407422|gb|EFV87384.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans C54]
          Length = 666

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V +FD  K          A+   G        D+ + LT   +  L      
Sbjct: 5   HILKRDGRVVAFDRDK-------IAAAIAAAGRGTGELDADVAQALTGAVIEALAAEG-- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +   +E IQ+QVE +L+++G+ +  R Y++YRE+ + +RA +           +
Sbjct: 56  NVCPGVETIQNQVEETLVKAGYWRTARAYIVYREQHARLRALRHTLVDVESAMEE 110


>gi|320530799|ref|ZP_08031839.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
 gi|320136958|gb|EFW28900.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
          Length = 754

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    V KR G    +D +KI  AI  A                  I+N+T    T    
Sbjct: 1   MAVTTVTKRAGHSVPYDRAKILNAIAAASK------EYAHPMTALEIENVTAAVETAFES 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             +    + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +
Sbjct: 55  RAE----ISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKHLMA 102


>gi|81429068|ref|YP_396068.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610710|emb|CAI55761.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 738

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P+    ++V+KR+G +  F   KI +A++KA   V+ +      +   I+ ++    V+ 
Sbjct: 10  PKMDLEIKVLKRDGRILPFSADKIEQAVIKAAKNVKDELEPLDYQ---ILNSVATDVVSE 66

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +         V I +IQ+ VE  L++   + I +EY+ YR +R   R 
Sbjct: 67  VGARFDKD--VKIYEIQNIVEHKLLEHHQYDIAQEYINYRTQRDFARN 112


>gi|322411829|gb|EFY02737.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323127322|gb|ADX24619.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 112

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDT----WRQNLAQVTKKVVIDLEE--V 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            A    I  IQ  VE  LM +G+  I   Y+ YR +R   R 
Sbjct: 55  HAERPTINMIQSLVENRLMDAGYITIAEHYISYRLQRDLERN 96


>gi|322377235|ref|ZP_08051727.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
 gi|321281948|gb|EFX58956.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
          Length = 737

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  LTE+ VT +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNALTERIVTEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPKG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 40.9 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KI 180
                +    I P L +   DG  + F+  +++  + +A   + DV+           + 
Sbjct: 2   HMIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTER 61

Query: 181 VLSETYKNMYDGLSESDLET 200
           +++E +     G+   +++ 
Sbjct: 62  IVTEIHSRFPKGVKIYEIQN 81


>gi|237649729|ref|ZP_04523981.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821427|ref|ZP_04597272.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 735

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----IDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVIDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|313890446|ref|ZP_07824076.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522961|ref|ZP_08399213.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
 gi|313121189|gb|EFR44298.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332314225|gb|EGJ27210.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
          Length = 112

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDET----WRQNLAQVTKKVVIDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM +G   I   Y+ YR +R   R 
Sbjct: 57  EK--PTINMIQSLVENRLMDAGFINIAEHYISYRLQRDLERN 96


>gi|283768228|ref|ZP_06341141.1| ATP cone domain protein [Bulleidia extructa W1219]
 gi|283105105|gb|EFC06476.1| ATP cone domain protein [Bulleidia extructa W1219]
          Length = 511

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+  +T F+  KI  AI KAF            R+   + +L         +    
Sbjct: 3   KVKKRDNSLTEFEMDKIKTAIKKAF-------HGSKKRIHSSVLDLLAIRAVADFEDKMV 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             ++ +EDIQD VE  L + G+ ++ + Y+LY
Sbjct: 56  DDVISVEDIQDSVEHVLSECGYSEVAKAYILY 87


>gi|149911726|ref|ZP_01900333.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
 gi|149805199|gb|EDM65217.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
          Length = 711

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI  A  +V+ +    ++ + + ++ +       + Q   S 
Sbjct: 5   VIKRDGCRVRFNIQRIQDAIFAAAKSVQQQSRDHAVEMANKVQKIL------ITQDVSSE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + I  IQ+ VE  LMQ  +  I R Y+ YR +R   R  QS   ++
Sbjct: 59  HAIEIHTIQNTVEDVLMQESNKLIARAYIEYRHQRDIARETQSILTNE 106


>gi|302873254|ref|YP_003841887.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|307688579|ref|ZP_07631025.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|302576111|gb|ADL50123.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
          Length = 703

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI++AI ++  + E     +     D+ + +        L+   
Sbjct: 2   LYVVKRDGRKVKFNSDKITKAIKRS--SEELGYDLKESEAIDLTQGIITSIEEEDLEE-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E IQ+ VE  L + G+  I++ Y  YR ER+ VR  +S
Sbjct: 58  ----VTVEQIQNFVEKVLTEKGYTNISKSYSAYRNERTRVRELKS 98


>gi|294634537|ref|ZP_06713072.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
 gi|291092051|gb|EFE24612.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
          Length = 724

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 13/120 (10%)

Query: 21  PFPEKIKGVQ--VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           P  ++ K V+  VIKR+G    F+  +I  A+++A  A     A     V  ++      
Sbjct: 5   PQSQEQKTVKPIVIKRDGCQVPFNEQRIKEAVLRASQAAGVDDADYCATVARVVAM---- 60

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
                         V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 61  -------QMADRERVDINEIQNAVENQLMAGDYKQLARAYIEYRHDRDVAREQRGRLNQD 113


>gi|222153086|ref|YP_002562263.1| ATP-binding protein [Streptococcus uberis 0140J]
 gi|222113899|emb|CAR42086.1| ATP-binding protein [Streptococcus uberis 0140J]
          Length = 112

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V           +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAAQTVYVIDE----NWRQNLAQVTKKVVIDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  IQ  VE  LM +G+  I   Y+ YR +R   R 
Sbjct: 57  EK--PTINMIQSLVENRLMDAGYINIAEHYISYRLQRDLERN 96


>gi|322391193|ref|ZP_08064665.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
 gi|321145946|gb|EFX41335.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
          Length = 733

 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           A P P     + V KR+G    FD  KI +A+ KA   V         R+  +++ + ++
Sbjct: 8   AVPAPT----LFVEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSALVERIVDE 63

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  H++    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 64  I------HSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +  A  AP L +   DG  + F+  +++  + +A   + DV+           + ++ E 
Sbjct: 5   EEKAVPAPTLFVEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSALVERIVDEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|322386564|ref|ZP_08060191.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
 gi|321269483|gb|EFX52416.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
          Length = 731

 Score = 95.2 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +    + V KR+G   +FD +KI +A+++A   +         +++ I   +  +  +R 
Sbjct: 9   DTAPTIYVEKRDGRRVAFDVTKIYKAMVRAAQDLGPMTPMLEAKLETITDRVVAEISSRF 68

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+
Sbjct: 69  AK------YVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERS 109


>gi|306828775|ref|ZP_07461967.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
 gi|304428953|gb|EFM32041.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
          Length = 737

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 11  ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDLTPLVEKRLNGLVERIVTEI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  HSRFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + D++           + +++E 
Sbjct: 7   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDLTPLVEKRLNGLVERIVTEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGVKIYEIQN 81


>gi|149001693|ref|ZP_01826666.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760151|gb|EDK67140.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 185

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----IDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVIDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|15900138|ref|NP_344742.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
 gi|14971670|gb|AAK74382.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
          Length = 735

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKCLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKCLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|302858564|gb|ADL71310.1| gp50 [Mycobacterium phage Eagle]
          Length = 677

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 102/607 (16%), Positives = 187/607 (30%), Gaps = 162/607 (26%)

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  +    + +   E   + +A++   +LS+ +               P+ +  F+  +
Sbjct: 130 PQELY----VHIVCDEEHPDYQAMKDAGVLSTEY--------------DPEWAGAFV--I 169

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG----NDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
            D   G   AL +                 D + VR  GA +    G++ G +P  ++  
Sbjct: 170 EDSREGWAAALVDLIDTHYRDEVSHFQRVYDVSRVRPFGAKLKTFGGRASGPLPLARMLI 229

Query: 433 DTAVAVNQGGK--------------------------RKGAVCAYLETWHIDVEEFLDLR 466
           D    +++                             R+ A  + +      +EEF+  +
Sbjct: 230 DVCEVLSEIATVGGSLNGIAAMEIDHAIAQCVVAGGVRRSARMSMMHWQDPQIEEFVRCK 289

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           + TG         N +  + DLF           L  P++VS                  
Sbjct: 290 QETGKH----WTTNISVVVDDLFWTA--------LNMPNQVS------------------ 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    +  +  A    + +   +   G P   F D       + +   V  +N C 
Sbjct: 320 ---------IMVRDQAHKALKWITDGMVANGEPG--FWDSSLSNQGEPN--EVVCTNPCG 366

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EITL         CNLG INL A   +N + D   L  + R   R L      +     K
Sbjct: 367 EITLQEWEP----CNLGHINLAAFVKDNGKVDTIDLIRSHRLMARFLIR-ATFSAVGDPK 421

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           +++    +R IG+G +G  S L +                                    
Sbjct: 422 SREVLDRNRRIGVGHLGVASYLAMTGRR-------------------------------- 449

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                     + +          L E+  E  + ++++    EL+  V            
Sbjct: 450 ----------YSKAPLDKHFRKTLRELAKE--VEQSAQQFSHELRIPVP------VKTRT 491

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD-- 823
           +APT TIA + GVS+ I P +   + +              + +L  +    E       
Sbjct: 492 VAPTGTIAKMPGVSEGIHPIFAKYFNRRIRFSKG----DAELEKLIDQGYDFEPCQYAQN 547

Query: 824 -----LKYHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNLY 876
                +   D  +   ++R   D ++I  +A ++    L+   +  Q  W D A S    
Sbjct: 548 TVVVTIPTKDTLVQEVVDRFGRDAEEIVESAEDLTLNQLLAFQAMYQMLWADNAVSFTAN 607

Query: 877 LDEPSGK 883
           +D    K
Sbjct: 608 VDPDRYK 614


>gi|111658806|ref|ZP_01409437.1| hypothetical protein SpneT_02000104 [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA   V       +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKCLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KI 180
                +    I P L +   DG  + F+  +++  + +A   + DV+           + 
Sbjct: 2   HMIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKCLNDLTER 61

Query: 181 VLSETYKNMYDGLSESDLET 200
           +++E +     G+   +++ 
Sbjct: 62  IITEIHSRFPQGIKIYEIQN 81


>gi|117620502|ref|YP_855772.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561909|gb|ABK38857.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 705

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVNQASPA-----------LAERIAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|332160122|ref|YP_004296699.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664352|gb|ADZ40996.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861978|emb|CBX72146.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica W22703]
          Length = 712

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A                    + Q  ++ 
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCAT-----------VARAVAQTMENQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  PKVDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|319939165|ref|ZP_08013529.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
 gi|319812215|gb|EFW08481.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
          Length = 112

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG VT F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVTDFNPDKIYQAILKAAQTVYVLTDD----LRQNLALVTKKVVLDLEEAGV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 57  ERATIS--MIQSMVENRLLGAGYITIAEHYISYRLQRDLDRNGYGDHIAVHLHFEQIR 112


>gi|270292547|ref|ZP_06198758.1| ATP cone domain-containing protein [Streptococcus sp. M143]
 gi|270278526|gb|EFA24372.1| ATP cone domain-containing protein [Streptococcus sp. M143]
          Length = 112

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVENRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|315223014|ref|ZP_07864893.1| ATP cone domain protein [Streptococcus anginosus F0211]
 gi|315187964|gb|EFU21700.1| ATP cone domain protein [Streptococcus anginosus F0211]
          Length = 122

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKRNG VT F+P KI +AI+KA   V          ++  +  +T++ V  L +  
Sbjct: 10  SMQVIKRNGEVTDFNPDKIYQAILKAAQTVYVLTDD----LRQNLALVTKKVVLDLEEAG 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                +    IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 66  VERATIS--MIQSMVENRLLGAGYITIAEHYISYRLQRDLDRNGYGDHIAVHLHFEQIR 122


>gi|146310102|ref|YP_001175176.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter sp.
           638]
 gi|145316978|gb|ABP59125.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter sp.
           638]
          Length = 712

 Score = 94.8 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +I+            Q    
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEIVS-----------QQMNE 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   H ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPHKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|307704585|ref|ZP_07641490.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307621882|gb|EFO00914.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 112

 Score = 94.8 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|331267142|ref|YP_004326772.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
 gi|326683814|emb|CBZ01432.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
          Length = 735

 Score = 94.8 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 9   ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDLTPLVEKRLNGLVERIVTEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 65  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + D++           + +++E 
Sbjct: 5   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDLTPLVEKRLNGLVERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|34497867|ref|NP_902082.1| anaerobic ribonucleoside triphosphate reductase [Chromobacterium
           violaceum ATCC 12472]
 gi|34103723|gb|AAQ60084.1| ribonucleoside-triphosphate reductase [Chromobacterium violaceum
           ATCC 12472]
          Length = 712

 Score = 94.8 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V  FD  KI+ A  +A MA    G +   R+   I +  E+   +L +   
Sbjct: 2   LQVSKRDGAVVGFDIGKIANACQRAAMA---AGHAEPARLALEIASQVERECRQLAR--- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  IQ +VE +LMQ  + ++ R Y+ YR +R +VRA  S     A +   +   
Sbjct: 56  -DGRLDIPAIQKRVEDALMQ-RYPEVARVYIEYRHDRDNVRARGSELH--AKLMGLVHKT 111

Query: 149 MDDGTLISFNSK 160
             + T  + N  
Sbjct: 112 DREATTENANKD 123


>gi|322375044|ref|ZP_08049558.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
 gi|321280544|gb|EFX57583.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
          Length = 737

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 11  ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 41.7 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGVKIYEIQN 81


>gi|310722633|ref|YP_003969456.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
 gi|306021476|gb|ADM80010.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
          Length = 703

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V +FD S I  AI  +  ++     +            TE  V +L+  N 
Sbjct: 1   MQVQKRDGRVVNFDQSFIETAISNSLKSINITDPTFPHHA-------TEAVVRKLIGRN- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               V IE+IQ  VE +LM+S +  + R Y+ YR +R   R   S   
Sbjct: 53  ---TVTIEEIQRVVEDTLMRSRYPAVARAYIEYRYDRDVARDMNSDMT 97


>gi|306825992|ref|ZP_07459328.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431708|gb|EFM34688.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 737

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 11  ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  HSRFPKG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 41.3 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPKGVKIYEIQN 81


>gi|315612325|ref|ZP_07887238.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
 gi|315315306|gb|EFU63345.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
          Length = 737

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 11  ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 41.7 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGVKIYEIQN 81


>gi|307702678|ref|ZP_07639630.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|307623794|gb|EFO02779.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
          Length = 735

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 9   ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 65  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.7 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|307706340|ref|ZP_07643152.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307708487|ref|ZP_07644952.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|322376343|ref|ZP_08050836.1| ATP cone domain protein [Streptococcus sp. M334]
 gi|307615403|gb|EFN94611.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|307618258|gb|EFN97413.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|321282150|gb|EFX59157.1| ATP cone domain protein [Streptococcus sp. M334]
          Length = 112

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSLVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|15902732|ref|NP_358282.1| hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|111658331|ref|ZP_01409019.1| hypothetical protein SpneT_02000471 [Streptococcus pneumoniae
           TIGR4]
 gi|116515795|ref|YP_816174.1| hypothetical protein SPD_0680 [Streptococcus pneumoniae D39]
 gi|118090036|ref|YP_873928.1| ATP cone domain-containing protein [Streptococcus pneumoniae TIGR4]
 gi|148985870|ref|ZP_01818964.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|148989862|ref|ZP_01821156.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992445|ref|ZP_01822140.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997142|ref|ZP_01824796.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|149003402|ref|ZP_01828291.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007662|ref|ZP_01831279.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010592|ref|ZP_01831963.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|149021646|ref|ZP_01835677.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484438|ref|ZP_02709390.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|168486207|ref|ZP_02710715.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488449|ref|ZP_02712648.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|168490869|ref|ZP_02715012.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|168492931|ref|ZP_02717074.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575441|ref|ZP_02721377.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|169833820|ref|YP_001694239.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683698|ref|YP_001835445.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|194397979|ref|YP_002037425.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|221231573|ref|YP_002510725.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854287|ref|YP_002735799.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225856453|ref|YP_002737964.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225858587|ref|YP_002740097.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225861318|ref|YP_002742827.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649422|ref|ZP_04523674.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821920|ref|ZP_04597765.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230987|ref|ZP_06964668.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254140|ref|ZP_06977726.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503216|ref|YP_003725156.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255807|ref|ZP_07341848.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|303260246|ref|ZP_07346217.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261452|ref|ZP_07347400.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264120|ref|ZP_07350041.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|303266269|ref|ZP_07352160.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|303268708|ref|ZP_07354498.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|307067384|ref|YP_003876350.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|307127671|ref|YP_003879702.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           670-6B]
 gi|15458277|gb|AAK99492.1| Hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|85720552|gb|ABC75778.1| ribonucleoside-diphosphate reductase, alpha subunit, truncation
           [Streptococcus pneumoniae TIGR4]
 gi|116076371|gb|ABJ54091.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147756842|gb|EDK63882.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|147758585|gb|EDK65583.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760817|gb|EDK67788.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|147765073|gb|EDK72002.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|147922016|gb|EDK73140.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|147924804|gb|EDK75888.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928762|gb|EDK79775.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930107|gb|EDK81093.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996322|gb|ACA36934.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042325|gb|EDT50371.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629032|gb|ACB89980.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|183570715|gb|EDT91243.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183573047|gb|EDT93575.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|183574590|gb|EDT95118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577037|gb|EDT97565.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578590|gb|EDT99118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|194357646|gb|ACF56094.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|220674033|emb|CAR68546.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720177|gb|ACO16031.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225723761|gb|ACO19614.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225724472|gb|ACO20324.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225726538|gb|ACO22389.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238811|gb|ADI69942.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793936|emb|CBW36332.1| ATP-binding protein [Streptococcus pneumoniae INV104]
 gi|301799793|emb|CBW32362.1| ATP-binding protein [Streptococcus pneumoniae OXC141]
 gi|301801624|emb|CBW34322.1| ATP-binding protein [Streptococcus pneumoniae INV200]
 gi|302597191|gb|EFL64296.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|302637586|gb|EFL68073.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638570|gb|EFL69034.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641768|gb|EFL72125.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|302644199|gb|EFL74455.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|302646525|gb|EFL76751.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|306408921|gb|ADM84348.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|306484733|gb|ADM91602.1| ATP cone domain protein [Streptococcus pneumoniae 670-6B]
 gi|327390136|gb|EGE88479.1| ATP cone domain protein [Streptococcus pneumoniae GA04375]
 gi|332073096|gb|EGI83575.1| ATP cone domain protein [Streptococcus pneumoniae GA17570]
 gi|332076058|gb|EGI86524.1| ATP cone domain protein [Streptococcus pneumoniae GA41301]
 gi|332077193|gb|EGI87655.1| ATP cone domain protein [Streptococcus pneumoniae GA17545]
 gi|332202642|gb|EGJ16711.1| ATP cone domain protein [Streptococcus pneumoniae GA41317]
 gi|332203933|gb|EGJ18000.1| ATP cone domain protein [Streptococcus pneumoniae GA47368]
 gi|332204787|gb|EGJ18852.1| ATP cone domain protein [Streptococcus pneumoniae GA47901]
          Length = 112

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLQEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|293364355|ref|ZP_06611081.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
 gi|291317201|gb|EFE57628.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
          Length = 737

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ VT +
Sbjct: 11  ATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKV----MDVTPLVEKRLNGLVERIVTEI 66

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 41.7 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 7   EEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGVKIYEIQN 81


>gi|306829697|ref|ZP_07462886.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
 gi|304428048|gb|EFM31139.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
          Length = 112

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLDEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVENRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|315617655|gb|EFU98261.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           3431]
          Length = 712

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  I+            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|297243781|ref|ZP_06927711.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
 gi|296888202|gb|EFH26944.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
          Length = 805

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  VQV KR+G V  FDP  I  AI  AF  +  + G      ++DI  ++  +   R  
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDLGKEVGPQEEQMIRDISDHIEAEIQDRY- 82

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                     IEDIQ  VE SL+++  +++ R Y  YR  R   RA  +           
Sbjct: 83  -----NGPAKIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN---- 133

Query: 145 LKIMMDDGTLISFNSKR 161
            +++  D +L+  N+ +
Sbjct: 134 -RLVNRDESLVRENANK 149


>gi|291457375|ref|ZP_06596765.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
 gi|291381210|gb|EFE88728.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
          Length = 802

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
                 K   V V KR+G V  FDP  I  AI  AF  +  +          +I+   +Q
Sbjct: 14  GTKAAAKASTVLVEKRDGRVVDFDPINIISAIKSAFGDLNKEVGPEE---DAMIRGFADQ 70

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + +    A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA  +     
Sbjct: 71  VEGEIKERY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEA 128

Query: 139 APIAPKLKIMMDDGTLISFNSKR 161
                  + +  D TLI  N+ +
Sbjct: 129 VS-----RFINHDPTLIHENANK 146


>gi|153956348|ref|YP_001397113.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           kluyveri DSM 555]
 gi|219856663|ref|YP_002473785.1| hypothetical protein CKR_3320 [Clostridium kluyveri NBRC 12016]
 gi|146349206|gb|EDK35742.1| NrdD [Clostridium kluyveri DSM 555]
 gi|219570387|dbj|BAH08371.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 701

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI+ AI  A   +        ++  D I +LT++ +  + + N 
Sbjct: 2   LHVVKRDGRKVEFNSIKITNAIKSASEEIG-----YELKESDFI-DLTQKVIKEIEELNV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E+IQ+ VE  L+++GH KI   Y  YR ER+ +R  +S
Sbjct: 56  KE--IEVEEIQNIVEKILLKNGHRKIGLVYSNYRSERTKIRDIKS 98


>gi|118444516|ref|YP_877160.1| anaerobic ribonucleoside triphosphate reductase [Clostridium novyi
           NT]
 gi|118134972|gb|ABK62016.1| oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium novyi NT]
          Length = 703

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD   I  AI     A E   A +   + ++ + + EQ          + 
Sbjct: 4   VVKRDGRRVPFDSINIKNAIK--GSADEIAFALKESEIIELTQKVIEQI------EIINC 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH  +
Sbjct: 56  KEISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSHLMT 102


>gi|16799382|ref|NP_469650.1| anaerobic ribonucleoside triphosphate reductase [Listeria innocua
           Clip11262]
 gi|16412734|emb|CAC95538.1| lin0305 [Listeria innocua Clip11262]
          Length = 716

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|307129134|ref|YP_003881150.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
 gi|306526663|gb|ADM96593.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
          Length = 712

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAAKAAGVDDADYCATVAGAVA-----------QQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  TRVDIREIQNVVENLLMSGKYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|170767095|ref|ZP_02901548.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
 gi|170124533|gb|EDS93464.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
          Length = 712

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  I+            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|330830675|ref|YP_004393627.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas veronii
           B565]
 gi|328805811|gb|AEB51010.1| Anaerobic ribonucleoside-triphosphate reductase, putative
           [Aeromonas veronii B565]
          Length = 705

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L  +    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVSRAAEAVNQANPA-----------LASRIANAVSQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|296101023|ref|YP_003611169.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055482|gb|ADF60220.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 712

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V D++            +    
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVADVVS-----------RQMNE 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDISEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 101


>gi|289167678|ref|YP_003445947.1| hypothetical protein smi_0831 [Streptococcus mitis B6]
 gi|307708979|ref|ZP_07645439.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|288907245|emb|CBJ22080.1| conserved hypothetical protein [Streptococcus mitis B6]
 gi|307620315|gb|EFN99431.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 112

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSLVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQVR 112


>gi|38639964|ref|NP_943919.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414653|gb|AAQ17696.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
          Length = 704

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V  FD S I  AI  +  ++     +            TE  V +L+  N 
Sbjct: 1   MQVQKRDGRVVDFDQSFIETAITNSLQSINIIDPTFPHHA-------TEAVVRKLIGRN- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              +V IE+IQ  VE +LM+S +  + R Y+ YR +R   R   S   
Sbjct: 53  ---LVTIEEIQHVVEDTLMKSRYPAVARSYIEYRYDRDVARDLNSDMT 97


>gi|256831157|ref|YP_003159885.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580333|gb|ACU91469.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 686

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G V S+   +I++AI+K+  A   K          + K L  +  ++L    ++
Sbjct: 4   QIVKRDGRVESWSVDRIAQAILKSLNASGIKDPI-------LAKRLAGKVESKL----EA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +   E +QD VE  LM+S  +++ R Y++YRE+R  +R+              
Sbjct: 53  EAMPEQELVQDTVEQVLMESRLYQVARRYIVYREKRRAIRSQTETFLDVTETIDS 107


>gi|331268374|ref|YP_004394866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329124924|gb|AEB74869.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 700

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    FD  KI+ AI                  +     +T++ + +L   N    
Sbjct: 2   VKRDGRRVPFDSIKITNAIK------GSADEIAFNLKESEAIEITQKVIEQLEDKNCDE- 54

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            + +E+IQ+ VE  L  +G   I + Y  YR ER+ +R  +SH  +
Sbjct: 55  -ISVEEIQNIVESVLQANGCEVIWKTYSNYRRERTKIREKKSHLMT 99


>gi|242280417|ref|YP_002992546.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123311|gb|ACS81007.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 683

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 41/202 (20%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             Q++KR+G + ++   +I++AI KA  A   K    + R+   ++   E          
Sbjct: 2   PTQIMKRDGRLETWSTERIAQAIFKALSASGIKDPLMAKRMARKVEYKLEGV-------- 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I   E +Q+ VE  LM S  H + ++++LYR+ R  +R  +               
Sbjct: 54  ---DIPEQEHVQNMVEEVLMDSRLHSVAKKFILYRDSRRRLRNQKDAYLD---------- 100

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
                   + +              L+    ++  +    + + GL    L  +    +R
Sbjct: 101 -----IKETID------------EYLEKSDWRVAENANMTHSFQGL---MLHLSGTIQAR 140

Query: 208 TLIEKEPNYAKVTARFLLEKLR 229
             +EK P   +         + 
Sbjct: 141 YALEKYPEEIRQAHEHGYFHIH 162


>gi|238761800|ref|ZP_04622774.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
 gi|238699914|gb|EEP92657.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
          Length = 712

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +A     A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAAGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|293365648|ref|ZP_06612357.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|306825031|ref|ZP_07458374.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307703596|ref|ZP_07640538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315613358|ref|ZP_07888267.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|322375430|ref|ZP_08049943.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|331266169|ref|YP_004325799.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
 gi|291316016|gb|EFE56460.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|304432858|gb|EFM35831.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307623003|gb|EFO01998.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315314593|gb|EFU62636.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|321279693|gb|EFX56733.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|326682841|emb|CBZ00458.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
          Length = 112

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEIAEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|290512190|ref|ZP_06551557.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
 gi|289775185|gb|EFD83186.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
          Length = 712

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|238918443|ref|YP_002931957.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella
           ictaluri 93-146]
 gi|238868011|gb|ACR67722.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 712

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++A  A +   A     V  ++                  
Sbjct: 5   VIKRDGCQVPFNEQRIKEAVLRAAQAADVNDADYCATVARVVAM-----------QMADR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 54  ERVDINDIQHAVENQLMAGNYKQLARAYIEYRHDRDVAREQRGRLNQD 101


>gi|37528320|ref|NP_931665.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787758|emb|CAE16871.1| Anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 712

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+ +A  AV        I           Q  + + Q     
Sbjct: 5   VIKRDGRQVPFDETRIRDAVKRATSAVGMTDDEYCI-----------QVASAVTQSMADY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V ++DIQ+ VE  L+ + H  +   Y+ YR +R  VR   S    +
Sbjct: 54  RQVDVQDIQNAVEHQLIANKHDHLVHRYIQYRHDRDTVRELHSRLNQE 101


>gi|195978076|ref|YP_002123320.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225868594|ref|YP_002744542.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225870449|ref|YP_002746396.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|195974781|gb|ACG62307.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225699853|emb|CAW93719.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|225701870|emb|CAW99344.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
          Length = 112

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +A++KA   V     S     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQLADFDPDKIYQALIKAARTVYVIDDS----WRQHLAQVTKKVVIDLEE--V 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            A    I  IQ  VE  L+ +G+  I   Y+ YR +R   R     S S      ++K
Sbjct: 55  QAERPTINMIQSLVENRLIDAGYMTIAEHYIAYRLQRDLERNGYGDSISVHLRFEQIK 112


>gi|303245838|ref|ZP_07332120.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302492621|gb|EFL52489.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 682

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A   +    S R+   ++   E            
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKALKASGIQDPLLSTRLAHKVEAKLEGV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     + +  
Sbjct: 54  -DVPEQEAVQDAVEQVLMESRLFAVARRYIVYREKRRELREQKAAYLDISDVID 106


>gi|288937450|ref|YP_003441509.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
 gi|288892159|gb|ADC60477.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|206579484|ref|YP_002240794.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
 gi|206568542|gb|ACI10318.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RAQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|333010248|gb|EGK29681.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           VA-6]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVN-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|24115453|ref|NP_709963.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           2a str. 301]
 gi|30065475|ref|NP_839646.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           2a str. 2457T]
 gi|24054771|gb|AAN45670.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 301]
 gi|30043739|gb|AAP19458.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 2457T]
 gi|281603563|gb|ADA76547.1| Anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2002017]
 gi|332748966|gb|EGJ79389.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-671]
 gi|332749245|gb|EGJ79666.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           4343-70]
 gi|332749871|gb|EGJ80284.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2747-71]
 gi|332763139|gb|EGJ93382.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2930-71]
 gi|333009101|gb|EGK28557.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-218]
 gi|333012034|gb|EGK31419.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-304]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVN-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|333011226|gb|EGK30640.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-272]
 gi|333012117|gb|EGK31499.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-227]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVN-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|110808020|ref|YP_691540.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           5 str. 8401]
 gi|110617568|gb|ABF06235.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           5 str. 8401]
          Length = 712

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVN-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|157150561|ref|YP_001450490.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262282234|ref|ZP_06060002.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
 gi|157075355|gb|ABV10038.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262261525|gb|EEY80223.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
          Length = 112

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLQEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVESRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQVR 112


>gi|329577341|gb|EGG58799.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1467]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|315143853|gb|EFT87869.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2141]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFQRS 113


>gi|187731109|ref|YP_001882978.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           CDC 3083-94]
 gi|187428101|gb|ACD07375.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           CDC 3083-94]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +  
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQ 108

Query: 150 DDGTLISFNSKRLEMIV 166
            + +L++ N+ +   ++
Sbjct: 109 TNASLLNENANKDSKVI 125


>gi|323171679|gb|EFZ57325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LT-68]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|312902577|ref|ZP_07761783.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|310634247|gb|EFQ17530.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|315579613|gb|EFU91804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0630]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|218692626|ref|YP_002400838.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ED1a]
 gi|218430190|emb|CAR11048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ED1a]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|26251144|ref|NP_757184.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           CFT073]
 gi|91213791|ref|YP_543777.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UTI89]
 gi|110644599|ref|YP_672329.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           536]
 gi|117626584|ref|YP_859907.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|191170771|ref|ZP_03032323.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|237703913|ref|ZP_04534394.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|306815544|ref|ZP_07449693.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|331650369|ref|ZP_08351441.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331660818|ref|ZP_08361750.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
 gi|26111576|gb|AAN83758.1|AE016771_269 Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           CFT073]
 gi|91075365|gb|ABE10246.1| NrdD subunit of ribonucleoside-triphosphate reductase and anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli UTI89]
 gi|110346191|gb|ABG72428.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           536]
 gi|115515708|gb|ABJ03783.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|190908995|gb|EDV68582.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|222036011|emb|CAP78756.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LF82]
 gi|226901825|gb|EEH88084.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|281181337|dbj|BAI57667.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE15]
 gi|294490614|gb|ADE89370.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IHE3034]
 gi|305851206|gb|EFM51661.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|307556410|gb|ADN49185.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ABU 83972]
 gi|307629314|gb|ADN73618.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UM146]
 gi|312948891|gb|ADR29718.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|323950691|gb|EGB46569.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H252]
 gi|323955527|gb|EGB51291.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H263]
 gi|330908585|gb|EGH37104.1| ribonucleotide reductase of class 3 (anaerobic), large subunit
           [Escherichia coli AA86]
 gi|331040763|gb|EGI12921.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331051860|gb|EGI23899.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|218702942|ref|YP_002410571.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI39]
 gi|218372928|emb|CAR20810.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI39]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|170681280|ref|YP_001746642.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218697988|ref|YP_002405655.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           55989]
 gi|293407962|ref|ZP_06651802.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331665909|ref|ZP_08366803.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331671386|ref|ZP_08372184.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
 gi|170518998|gb|ACB17176.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218354720|emb|CAV01764.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           55989]
 gi|291472213|gb|EFF14695.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331056960|gb|EGI28954.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331071231|gb|EGI42588.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|323481675|gb|ADX81114.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis 62]
          Length = 726

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 13  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 72

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 73  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 112


>gi|323181971|gb|EFZ67382.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1357]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|229818102|ref|ZP_04448384.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
 gi|229784706|gb|EEP20820.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
          Length = 796

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FDP  I  A+  AF  ++ +        + +I++L  Q    + +    
Sbjct: 19  QVEKRDGRIVDFDPINIIAAVKSAFADLDKEVGPEE---EALIRDLANQVEGEIKERY-- 73

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           A    IEDIQ+ VE +L++   + + R Y  YR ++   RA     K+        + + 
Sbjct: 74  AGPAKIEDIQNLVEHALIEDHLYDVARTYTNYRLDKDIQRA-----KATDVNEAVARFIN 128

Query: 150 DDGTLISFNSKR 161
           +D TLI  N+ +
Sbjct: 129 NDPTLIHENANK 140


>gi|170021751|ref|YP_001726705.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|193069836|ref|ZP_03050786.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218561398|ref|YP_002394311.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           S88]
 gi|256025176|ref|ZP_05439041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia sp.
           4_1_40B]
 gi|307312986|ref|ZP_07592614.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|312973946|ref|ZP_07788117.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|331671145|ref|ZP_08371978.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
 gi|169756679|gb|ACA79378.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|192956890|gb|EDV87343.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218368167|emb|CAR05976.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           S88]
 gi|306907154|gb|EFN37661.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|309704744|emb|CBJ04095.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ETEC H10407]
 gi|310331480|gb|EFP98736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|315063548|gb|ADT77875.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|320200633|gb|EFW75219.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EC4100B]
 gi|323380372|gb|ADX52640.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           KO11]
 gi|323935363|gb|EGB31711.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1520]
 gi|323940158|gb|EGB36352.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E482]
 gi|323945973|gb|EGB42011.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H120]
 gi|331061734|gb|EGI33660.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|157157950|ref|YP_001465747.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           E24377A]
 gi|157079980|gb|ABV19688.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E24377A]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|315151788|gb|EFT95804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0012]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|270291993|ref|ZP_06198208.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
 gi|270279521|gb|EFA25363.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
          Length = 735

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  + V KR+G    FD  KI +A+ KA   V       +  V+  +  L E+ V  +
Sbjct: 9   ATVPTLFVEKRDGRRVVFDVDKIDKALHKAADKV----MDVTPLVEKRLNGLLERIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                    V I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 65  HSRFPQG--VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 41.7 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           + +    P L +   DG  + F+  +++  + +A   + DV+           + +++E 
Sbjct: 5   EENLATVPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNGLLERIVAEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGVKIYEIQN 79


>gi|146970|gb|AAA24226.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. W3110]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|74314715|ref|YP_313134.1| anaerobic ribonucleoside triphosphate reductase [Shigella sonnei
           Ss046]
 gi|73858192|gb|AAZ90899.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           Ss046]
 gi|323166725|gb|EFZ52483.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           53G]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|16132060|ref|NP_418659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89110956|ref|AP_004736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157163713|ref|YP_001461031.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           HS]
 gi|170083679|ref|YP_001732999.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|193063742|ref|ZP_03044830.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194426625|ref|ZP_03059179.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194437791|ref|ZP_03069886.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209921734|ref|YP_002295818.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SE11]
 gi|218556788|ref|YP_002389702.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI1]
 gi|218707847|ref|YP_002415366.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UMN026]
 gi|238903341|ref|YP_002929137.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|253775137|ref|YP_003037968.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037259|ref|ZP_04871336.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|254164165|ref|YP_003047275.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|256019890|ref|ZP_05433755.1| anaerobic ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|260858393|ref|YP_003232284.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|260870993|ref|YP_003237395.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|293402863|ref|ZP_06646960.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|293417740|ref|ZP_06660362.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|293476542|ref|ZP_06664950.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|298378391|ref|ZP_06988275.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|301028070|ref|ZP_07191351.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|307140932|ref|ZP_07500288.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           H736]
 gi|312965919|ref|ZP_07780145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|331644987|ref|ZP_08346104.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331656073|ref|ZP_08357061.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331680375|ref|ZP_08381034.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332281030|ref|ZP_08393443.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|34395948|sp|P28903|NRDD_ECOLI RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|537080|gb|AAA97135.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790686|gb|AAC77195.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85676987|dbj|BAE78237.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K12 substr. W3110]
 gi|157069393|gb|ABV08648.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           HS]
 gi|169891514|gb|ACB05221.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|192930729|gb|EDV83335.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194415364|gb|EDX31632.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194423287|gb|EDX39279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209914993|dbj|BAG80067.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE11]
 gi|218363557|emb|CAR01212.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI1]
 gi|218434944|emb|CAR15883.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           UMN026]
 gi|226840365|gb|EEH72367.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|238859989|gb|ACR61987.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|242379760|emb|CAQ34587.1| ribonucleoside-triphosphate reductase, subunit of anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli BL21(DE3)]
 gi|253326181|gb|ACT30783.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976068|gb|ACT41739.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|253980224|gb|ACT45894.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           BL21(DE3)]
 gi|257757042|dbj|BAI28544.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|257767349|dbj|BAI38844.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|260450939|gb|ACX41361.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           DH1]
 gi|284924412|emb|CBG37536.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           042]
 gi|291320995|gb|EFE60437.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|291429778|gb|EFF02792.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|291430458|gb|EFF03456.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|298280725|gb|EFI22226.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|299878843|gb|EFI87054.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|312289162|gb|EFR17056.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|315138791|dbj|BAJ45950.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           DH1]
 gi|320175802|gb|EFW50886.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae CDC 74-1112]
 gi|323157557|gb|EFZ43666.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EPECa14]
 gi|323162035|gb|EFZ47907.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E128010]
 gi|323176153|gb|EFZ61745.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1180]
 gi|323970506|gb|EGB65765.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA007]
 gi|323975417|gb|EGB70518.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TW10509]
 gi|324118800|gb|EGC12692.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1167]
 gi|331035962|gb|EGI08200.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331046427|gb|EGI18517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331071838|gb|EGI43174.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332103382|gb|EGJ06728.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|332346317|gb|AEE59651.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Escherichia
           coli UMNK88]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|323960281|gb|EGB55922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H489]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|82779300|ref|YP_405649.1| anaerobic ribonucleoside triphosphate reductase [Shigella
           dysenteriae Sd197]
 gi|81243448|gb|ABB64158.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae Sd197]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|82546515|ref|YP_410462.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           Sb227]
 gi|81247926|gb|ABB68634.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           Sb227]
 gi|320185332|gb|EFW60104.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           CDC 796-83]
 gi|332087111|gb|EGI92245.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           3594-74]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|15804828|ref|NP_290869.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 EDL933]
 gi|15834469|ref|NP_313242.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751072|ref|ZP_02776094.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754815|ref|ZP_02779822.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760488|ref|ZP_02785495.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766524|ref|ZP_02791531.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774045|ref|ZP_02799052.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782760|ref|ZP_02807767.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784883|ref|ZP_02809890.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|168797813|ref|ZP_02822820.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|195937263|ref|ZP_03082645.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808013|ref|ZP_03250350.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811996|ref|ZP_03253325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820712|ref|ZP_03261032.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395826|ref|YP_002273781.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325941|ref|ZP_03442025.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796258|ref|YP_003081095.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225358|ref|ZP_05939639.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255389|ref|ZP_05947922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285651|ref|YP_003502469.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519242|gb|AAG59435.1|AE005656_3 anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13364692|dbj|BAB38638.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770204|gb|EDU34048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014840|gb|EDU52962.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999753|gb|EDU68739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357853|gb|EDU76272.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364193|gb|EDU82612.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368865|gb|EDU87281.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374739|gb|EDU93155.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|189379431|gb|EDU97847.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727814|gb|EDZ77415.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733273|gb|EDZ81960.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740835|gb|EDZ88517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157226|gb|ACI34659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209749668|gb|ACI73141.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749670|gb|ACI73142.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749672|gb|ACI73143.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749674|gb|ACI73144.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749676|gb|ACI73145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|217322162|gb|EEC30586.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595658|gb|ACT75019.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290765524|gb|ADD59485.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190629|gb|EFW65279.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638997|gb|EFX08643.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. G5101]
 gi|320644366|gb|EFX13431.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649684|gb|EFX18208.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655080|gb|EFX23041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660587|gb|EFX28048.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665856|gb|EFX32893.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326345429|gb|EGD69172.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346713|gb|EGD70447.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. 1044]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|194433892|ref|ZP_03066165.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|194417873|gb|EDX33969.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|320177637|gb|EFW52627.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           ATCC 9905]
 gi|332083239|gb|EGI88470.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           5216-82]
 gi|332083702|gb|EGI88920.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 155-74]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|188494309|ref|ZP_03001579.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|191167267|ref|ZP_03029085.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
 gi|188489508|gb|EDU64611.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|190902720|gb|EDV62451.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|315173494|gb|EFU17511.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1346]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|307271805|ref|ZP_07553076.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
 gi|306511683|gb|EFM80682.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|227519463|ref|ZP_03949512.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229544864|ref|ZP_04433589.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|227073075|gb|EEI11038.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229310032|gb|EEN76019.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|315025480|gb|EFT37412.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2137]
 gi|315032604|gb|EFT44536.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0017]
 gi|315155614|gb|EFT99630.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0043]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|21910387|ref|NP_664655.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
 gi|21904584|gb|AAM79458.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
          Length = 112

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +    +  + K +        ++   
Sbjct: 1   MQIIKRDGHVADFDPDKIYQAIIKAARTVYVIDDTWRQNLTHVTKKVVIDLEEAHVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  +Q  VE  LM +G+  I   Y+ YR +R   R              ++K
Sbjct: 59  ----PTINMVQSLVENRLMDAGYITIAEHYISYRLQRDLERNGYGDKIVVHLRFEQIK 112


>gi|260847071|ref|YP_003224849.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
 gi|257762218|dbj|BAI33715.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|29377228|ref|NP_816382.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227554237|ref|ZP_03984284.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229549131|ref|ZP_04437856.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294779724|ref|ZP_06745112.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300860551|ref|ZP_07106638.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269217|ref|ZP_07550571.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|307276990|ref|ZP_07558100.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|307278683|ref|ZP_07559751.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|307288628|ref|ZP_07568609.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|307290242|ref|ZP_07570158.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|312900113|ref|ZP_07759429.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|312951928|ref|ZP_07770816.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|29344694|gb|AAO82452.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227176637|gb|EEI57609.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229305756|gb|EEN71752.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294453215|gb|EFG21629.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300849590|gb|EFK77340.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498663|gb|EFM68164.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|306500382|gb|EFM69718.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|306504623|gb|EFM73825.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|306506413|gb|EFM75573.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|306514436|gb|EFM82997.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|310630117|gb|EFQ13400.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|311292748|gb|EFQ71304.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|315030426|gb|EFT42358.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4000]
 gi|315035125|gb|EFT47057.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0027]
 gi|315148715|gb|EFT92731.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4244]
 gi|315154283|gb|EFT98299.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0031]
 gi|315159625|gb|EFU03642.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0312]
 gi|315162082|gb|EFU06099.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0645]
 gi|315165321|gb|EFU09338.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1302]
 gi|315168735|gb|EFU12752.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1341]
 gi|315170449|gb|EFU14466.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1342]
 gi|315573791|gb|EFU85982.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309B]
 gi|315580303|gb|EFU92494.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309A]
 gi|327535968|gb|AEA94802.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus faecalis OG1RF]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|333023287|ref|ZP_08451351.1| putative predicted 76.3Kd protein [Streptomyces sp. Tu6071]
 gi|332743139|gb|EGJ73580.1| putative predicted 76.3Kd protein [Streptomyces sp. Tu6071]
          Length = 631

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 104/571 (18%), Positives = 180/571 (31%), Gaps = 150/571 (26%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLG----NDWTPVRGLGAHIHGTNGKSQGVIPF 427
           +   V D   G   AL++    A   G        D + VR  G+ +    G + G +PF
Sbjct: 127 YAYEVEDSREGWARALEDLIGTAHEPGEGSRDRIYDVSQVRAKGSPLESFGGTASGPLPF 186

Query: 428 ------------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
                                   +++ +  A  +  GG R+ A  + +      + EF+
Sbjct: 187 ALMLVEIGEILSEEEGEPLNGTAAMEIDHAIAKCIISGGVRRSARMSIMHWADPRIGEFM 246

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            L+K  G         N +  I + F+ +V +   W                        
Sbjct: 247 RLKKYGGH-----WTTNISVEIDNEFLAQVAERDSW------------------------ 277

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                             A  +++++   +   G P +      +  S +  V  V+++N
Sbjct: 278 ------------------ARFVFQRITEGMLRNGEPGVWN----SSLSAEGEVDGVYTTN 315

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C E TL         CNLGS+NL A  +     D   L        R L      +   
Sbjct: 316 PCGEATLTPWEP----CNLGSVNLGAFVSPGGSVDRTGLLQAHALMTRYLLRATFASVSD 371

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +++K+   +R IG+G  GF   L    I Y+        +             SV L 
Sbjct: 372 F-RSRKAISRYRRIGVGHFGFADYLAKRGIKYSD----AWCN------------TSVIL- 413

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                                  +  LA   DE+A+        + L+  V         
Sbjct: 414 ----------------------ELEELAHAVDEVAIEYA-----NALRIAVP------IK 440

Query: 763 CMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT TI+ + GVS + I   + + +++           +  + E +      E   
Sbjct: 441 KRVIAPTGTISKLAGVSGEGIHAPFADYFIRRIRFSSLEPAEASKIEEYRAAGYLVE--- 497

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI---ESASRRQ----KWIDQAQS-- 872
            D    +  +  I    D L  +   A  I+   ++   +    ++     W DQA S  
Sbjct: 498 PDKVAANTMVVAIPT-KDPLVDLVQDAGMIEHAGMLQVTDMLRVQELYQSAWADQAVSYT 556

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            N+   E + + L    R  +L  LK T   
Sbjct: 557 ANVDPKEYTPESLQNCLRD-YLFHLKGTTVF 586


>gi|324112138|gb|EGC06116.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii B253]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|257090991|ref|ZP_05585352.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
 gi|256999803|gb|EEU86323.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|237807193|ref|YP_002891633.1| anaerobic ribonucleoside triphosphate reductase [Tolumonas auensis
           DSM 9187]
 gi|237499454|gb|ACQ92047.1| anaerobic ribonucleoside-triphosphate reductase [Tolumonas auensis
           DSM 9187]
          Length = 707

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD S+I +A+ KA  AV  +  +    V   I +L               
Sbjct: 7   VIKRDGCRVSFDGSRIWQAVAKAAEAVNVRDDAYCASVAGQIASLLA-----------GR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I ++Q  VE  LM+  H K+ R Y+ YR +R   R  Q     +
Sbjct: 56  DEVDISEVQTLVENLLMEGPHKKLARAYIEYRHDRDLAREKQGRLNKE 103


>gi|312906437|ref|ZP_07765445.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
 gi|310627591|gb|EFQ10874.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|317056517|ref|YP_004104984.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448786|gb|ADU22350.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 723

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FDP KI  A+ KA +A       +     + I ++T+    +    NK
Sbjct: 1   MKIIKRNGAEEVFDPDKIINAVKKANIA-----GEKGRISDEEIADVTDYVEYKC---NK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  LGRAVTVEEIQDMVENQLMAKGAFELA 79


>gi|218551536|ref|YP_002385328.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|331681261|ref|ZP_08381898.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
 gi|218359078|emb|CAQ91739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|320193644|gb|EFW68279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           WV_060327]
 gi|323965629|gb|EGB61083.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M863]
 gi|325499798|gb|EGC97657.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ECD227]
 gi|327250183|gb|EGE61902.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           STEC_7v]
 gi|331081482|gb|EGI52643.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|293384613|ref|ZP_06630478.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|293386751|ref|ZP_06631322.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|312979405|ref|ZP_07791093.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
 gi|291078071|gb|EFE15435.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|291083754|gb|EFE20717.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|311287776|gb|EFQ66332.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
          Length = 727

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 74  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 113


>gi|257087719|ref|ZP_05582080.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257416922|ref|ZP_05593916.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257421637|ref|ZP_05598627.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
 gi|256995749|gb|EEU83051.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257158750|gb|EEU88710.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257163461|gb|EEU93421.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|257084282|ref|ZP_05578643.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
 gi|256992312|gb|EEU79614.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|256963857|ref|ZP_05568028.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256954353|gb|EEU70985.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|256616745|ref|ZP_05473591.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256596272|gb|EEU15448.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|163789959|ref|ZP_02184395.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
 gi|159874899|gb|EDP68967.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
          Length = 737

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G    F   KI  A++KA  ++  +   +SI+ +++I++ + ++   R + + 
Sbjct: 17  IKVMKRDGREVEFKEEKIFEALLKAQRSLIKETDEKSIQELKEIVEVIKKEIAQRFVSN- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                + I +IQ  VE  L+ +  H++   Y++YR  R   R+ 
Sbjct: 76  -----IKIYEIQSIVEHVLIDAHKHELAEAYLVYRTRRDLERSQ 114


>gi|145642160|ref|ZP_01797729.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
 gi|145273151|gb|EDK13028.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.4-21]
          Length = 707

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+     F+  +I  AI KA  AV         ++        ++    +  
Sbjct: 1   MSNFGVIKRDSSRAEFEIQRIINAIKKAASAVNISDEFYCHQIG-------QEVGNEIFI 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H++    + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 54  HHQGE--IDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|255971849|ref|ZP_05422435.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255974846|ref|ZP_05425432.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256763375|ref|ZP_05503955.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256854049|ref|ZP_05559414.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256957980|ref|ZP_05562151.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|257079917|ref|ZP_05574278.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257420141|ref|ZP_05597135.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
 gi|255962867|gb|EET95343.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255967718|gb|EET98340.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256684626|gb|EEU24321.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256710992|gb|EEU26035.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256948476|gb|EEU65108.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|256987947|gb|EEU75249.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257161969|gb|EEU91929.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|257081685|ref|ZP_05576046.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
 gi|256989715|gb|EEU77017.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|256961001|ref|ZP_05565172.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
 gi|256951497|gb|EEU68129.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
          Length = 730

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++V+KR+G + +FD  KI  A++KA   +  +       +VQ I+ ++  +   R  
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKAEQKIHDQVTPLTHQKVQSIVADVNREIAERFT 76

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +      V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+
Sbjct: 77  NN------VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERS 116


>gi|213621683|ref|ZP_03374466.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 120

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG-----VFPIDS 725
           + Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G         D 
Sbjct: 1   MAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDW 60

Query: 726 IGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI
Sbjct: 61  QPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSI 120


>gi|284007690|emb|CBA73439.1| anaerobic ribonucleoside-triphosphate reductase [Arsenophonus
           nasoniae]
          Length = 710

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+M+A  A           V  +++           Q   + 
Sbjct: 5   VIKRDGCQVLFDKNRIKEAVMRA--ATGICDDQYCAVVASVVE-----------QQLGNR 51

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR ER   R  +S    +
Sbjct: 52  QTVDIHEIQDAVENQLMAGRYKDLARNYIAYRHERDIAREQRSRLTHE 99


>gi|332360461|gb|EGJ38272.1| ATP cone domain protein [Streptococcus sanguinis SK355]
          Length = 112

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 57  ERATIS--MIQSMVESRLLGAGYITIAEHYISYRLQRDLERNGYGDHIAVHLHFEQVR 112


>gi|251791307|ref|YP_003006028.1| anaerobic ribonucleoside triphosphate reductase [Dickeya zeae
           Ech1591]
 gi|247539928|gb|ACT08549.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya zeae
           Ech1591]
          Length = 712

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A     A     V   +            Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAAKAANVDDADYCATVAGAVA-----------QQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMSGKYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|150014960|ref|YP_001307214.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901425|gb|ABR32258.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 702

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI++AI     A E     +  +V D +  +         +   
Sbjct: 2   LYVVKRDGREVEFNSDKIAQAIK--GSASEIGLNLKESQVLDTVHKVITYIEEEYKK--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E IQ+ VE +L   GH  I   Y  YR ER+ VR  +S
Sbjct: 57  ---TITVEQIQNFVEKALRNEGHKDIAVAYSAYRRERTKVRDIKS 98


>gi|323189881|gb|EFZ75159.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           RN587/1]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E         V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDDDYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|215489583|ref|YP_002332014.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267655|emb|CAS12112.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E         V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDDDYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|56416224|ref|YP_153299.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197365147|ref|YP_002144784.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56130481|gb|AAV79987.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197096624|emb|CAR62238.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|16763252|ref|NP_458869.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29144731|ref|NP_808073.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053330|ref|ZP_03346208.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213427660|ref|ZP_03360410.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213612406|ref|ZP_03370232.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213645913|ref|ZP_03375966.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213855089|ref|ZP_03383329.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289827022|ref|ZP_06545838.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25285854|pir||AC1058 ribonucleoside-triphosphate reductase (EC 1.17.4.2) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505560|emb|CAD06912.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29140370|gb|AAO71933.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|323351559|ref|ZP_08087213.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|322122045|gb|EFX93771.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|324991140|gb|EGC23074.1| ATP cone domain protein [Streptococcus sanguinis SK353]
 gi|324992890|gb|EGC24810.1| ATP cone domain protein [Streptococcus sanguinis SK405]
 gi|324994473|gb|EGC26386.1| ATP cone domain protein [Streptococcus sanguinis SK678]
 gi|325687472|gb|EGD29493.1| ATP cone domain protein [Streptococcus sanguinis SK72]
 gi|325689691|gb|EGD31695.1| ATP cone domain protein [Streptococcus sanguinis SK115]
 gi|325696517|gb|EGD38407.1| ATP cone domain protein [Streptococcus sanguinis SK160]
 gi|327460343|gb|EGF06680.1| ATP cone domain protein [Streptococcus sanguinis SK1057]
 gi|327462195|gb|EGF08522.1| ATP cone domain protein [Streptococcus sanguinis SK1]
 gi|327470024|gb|EGF15488.1| ATP cone domain protein [Streptococcus sanguinis SK330]
 gi|327474216|gb|EGF19623.1| ATP cone domain protein [Streptococcus sanguinis SK408]
 gi|327489683|gb|EGF21474.1| ATP cone domain protein [Streptococcus sanguinis SK1058]
 gi|328946296|gb|EGG40440.1| ATP cone domain protein [Streptococcus sanguinis SK1087]
 gi|332360873|gb|EGJ38679.1| ATP cone domain protein [Streptococcus sanguinis SK49]
 gi|332361190|gb|EGJ38994.1| ATP cone domain protein [Streptococcus sanguinis SK1056]
 gi|332366880|gb|EGJ44621.1| ATP cone domain protein [Streptococcus sanguinis SK1059]
          Length = 112

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 57  ERATIS--MIQSMVESRLLGAGYITIAEHYISYRLQRDLERNGYGDHIAVHLHFEQVR 112


>gi|62182877|ref|YP_219294.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62130510|gb|AAX68213.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717379|gb|EFZ08950.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     + +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATIAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|145636719|ref|ZP_01792385.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
 gi|145270017|gb|EDK09954.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
          Length = 707

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +    VIKR+     F+  +I  AI KA  AV         ++        ++    +  
Sbjct: 1   MSNFGVIKRDSSRAEFEIQRIINAIKKAASAVNISDEFYCHQIG-------QEVGNEIFT 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           H++    + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 54  HHQGE--IDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|15675175|ref|NP_269349.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19746144|ref|NP_607280.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28895963|ref|NP_802313.1| hypothetical protein SPs1051 [Streptococcus pyogenes SSI-1]
 gi|50914260|ref|YP_060232.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808671|ref|ZP_00366394.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|71903562|ref|YP_280365.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71910738|ref|YP_282288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94988658|ref|YP_596759.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94990548|ref|YP_598648.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94992481|ref|YP_600580.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94994470|ref|YP_602568.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|139473716|ref|YP_001128432.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209559480|ref|YP_002285952.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|306827309|ref|ZP_07460596.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
 gi|13622339|gb|AAK34070.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19748321|gb|AAL97779.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28811213|dbj|BAC64146.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50903334|gb|AAT87049.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|71802657|gb|AAX72010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71853520|gb|AAZ51543.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94542166|gb|ABF32215.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94544056|gb|ABF34104.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94545989|gb|ABF36036.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94547978|gb|ABF38024.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|134271963|emb|CAM30201.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209540681|gb|ACI61257.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|304430456|gb|EFM33478.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 118

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +    +  + K +        ++   
Sbjct: 7   MQIIKRDGHVADFDPDKIYQAIIKAARTVYVIDDTWRQNLTHVTKKVVIDLEEAHVER-- 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  +Q  VE  LM +G+  I   Y+ YR +R   R              ++K
Sbjct: 65  ----PTINMVQSLVENRLMDAGYITIAEHYISYRLQRDLERNGYGDKIVVHLRFEQIK 118


>gi|161617740|ref|YP_001591705.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551298|ref|ZP_02345053.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442441|ref|YP_002043690.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250742|ref|YP_002149369.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|238910608|ref|ZP_04654445.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|161367104|gb|ABX70872.1| hypothetical protein SPAB_05603 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401104|gb|ACF61326.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214445|gb|ACH51842.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323917|gb|EDZ11756.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167991234|ref|ZP_02572333.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232785|ref|ZP_02657843.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168244067|ref|ZP_02668999.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168262510|ref|ZP_02684483.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464674|ref|ZP_02698577.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168821129|ref|ZP_02833129.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194451821|ref|YP_002048475.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471484|ref|ZP_03077468.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264126|ref|ZP_03164200.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244214|ref|YP_002218315.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388147|ref|ZP_03214759.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927049|ref|ZP_03218251.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205355187|ref|YP_002228988.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859579|ref|YP_002246230.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|18203220|sp|Q9L646|NRDD_SALTY RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|7331271|gb|AAF60351.1|AF242390_1 anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|16423016|gb|AAL23272.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194410125|gb|ACF70344.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457848|gb|EDX46687.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195632571|gb|EDX51025.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197242381|gb|EDY25001.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197938730|gb|ACH76063.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199605245|gb|EDZ03790.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323714|gb|EDZ08909.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205274968|emb|CAR40039.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330264|gb|EDZ17028.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332912|gb|EDZ19676.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337077|gb|EDZ23841.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342347|gb|EDZ29111.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348967|gb|EDZ35598.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711382|emb|CAR35760.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|267996792|gb|ACY91677.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301160937|emb|CBW20470.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915548|dbj|BAJ39522.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320088879|emb|CBY98637.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222579|gb|EFX47651.1| Ribonucleotide reductase of class III anaerobic, large subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332991262|gb|AEF10245.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|116871673|ref|YP_848454.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740551|emb|CAK19671.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 716

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A++ +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIDLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|322615614|gb|EFY12534.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618674|gb|EFY15563.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322621913|gb|EFY18763.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627637|gb|EFY24428.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630944|gb|EFY27708.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637837|gb|EFY34538.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642296|gb|EFY38902.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643930|gb|EFY40478.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650994|gb|EFY47379.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656754|gb|EFY53042.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659823|gb|EFY56066.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322661966|gb|EFY58182.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666285|gb|EFY62463.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672705|gb|EFY68816.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676135|gb|EFY72206.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680619|gb|EFY76657.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684487|gb|EFY80491.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192802|gb|EFZ78028.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197321|gb|EFZ82461.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201561|gb|EFZ86625.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206075|gb|EFZ91037.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213084|gb|EFZ97886.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215457|gb|EGA00201.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219442|gb|EGA03927.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227745|gb|EGA11899.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228915|gb|EGA13044.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236473|gb|EGA20549.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323240025|gb|EGA24072.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241927|gb|EGA25956.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247924|gb|EGA31861.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251438|gb|EGA35309.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258196|gb|EGA41873.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263658|gb|EGA47179.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265746|gb|EGA49242.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270190|gb|EGA53638.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|261249540|emb|CBG27406.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|224586276|ref|YP_002640075.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224470804|gb|ACN48634.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|323132788|gb|ADX20218.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326626121|gb|EGE32466.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326630345|gb|EGE36688.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 714

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 6   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 55  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 103


>gi|237729175|ref|ZP_04559656.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter sp.
           30_2]
 gi|226908904|gb|EEH94822.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter sp.
           30_2]
          Length = 712

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++ +   +           
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSSQMNER---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  -SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|213419210|ref|ZP_03352276.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 605

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|297519341|ref|ZP_06937727.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           OP50]
          Length = 455

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|254831898|ref|ZP_05236553.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 10403S]
 gi|284800577|ref|YP_003412442.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284993763|ref|YP_003415531.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
 gi|284056139|gb|ADB67080.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284059230|gb|ADB70169.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
          Length = 716

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|330016521|ref|ZP_08308476.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
 gi|328528692|gb|EGF55652.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
          Length = 707

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F+  +I  AI++A  A     A     V +++            Q  +   
Sbjct: 1   MKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQGRA 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 96


>gi|47096368|ref|ZP_00233963.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224502427|ref|ZP_03670734.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL R2-561]
 gi|254900532|ref|ZP_05260456.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes J0161]
 gi|254913517|ref|ZP_05263529.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
 gi|254937902|ref|ZP_05269599.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|47015242|gb|EAL06180.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610511|gb|EEW23119.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|293591526|gb|EFF99860.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
          Length = 716

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|295098395|emb|CBK87485.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 712

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMHE 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 101


>gi|255025356|ref|ZP_05297342.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-003]
          Length = 716

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|317493663|ref|ZP_07952084.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918606|gb|EFV39944.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 712

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+++A  A           V  ++                  
Sbjct: 5   VIKRDGCQVPFDEQRIKEAVVRAAQAAGVDDTDYCATVARVVAM-----------QMADL 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  ERVDIHVIQNAVENQLMAGNYKQLARAYIEYRHDRDVSREQRGRLNQE 101


>gi|283783570|ref|YP_003374324.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
 gi|283441058|gb|ADB13524.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
          Length = 805

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQV KR+G V  FDP  I  AI  AF  +  +   +    + +I+N+++     +  
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDLGKEIGPQE---EQLIRNISDHIEAEIQD 80

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    IEDIQ  VE SL+++  +++ R Y  YR  R   RA  +            
Sbjct: 81  RY--NGPAKIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRARATDINEAVN----- 133

Query: 146 KIMMDDGTLISFNSKR 161
           +++  D +L+  N+ +
Sbjct: 134 RLVNRDESLVRENANK 149


>gi|328956597|ref|YP_004373983.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
 gi|328672921|gb|AEB28967.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
          Length = 738

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G    F   KI  A++KA  ++E +    ++  ++ I+  + E+   R     
Sbjct: 18  LKVLKRDGREVEFKEEKIFSALLKAHQSLEKETDKETVKELKGIVTKVKEEIAKRFSAD- 76

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                + I +IQ  VE +L+ +  H +   Y+LYR  R   R+ 
Sbjct: 77  -----IKIYEIQSIVEHTLLDAHEHDLAEAYLLYRSRRDLERSQ 115


>gi|262045318|ref|ZP_06018343.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037374|gb|EEW38620.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 707

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F+  +I  AI++A  A     A     V +++            Q  +   
Sbjct: 1   MKRDGCKVPFNLERIQEAILRAAKAAGVDDADYCATVAEVVS-----------QQMQGRA 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 96


>gi|16802325|ref|NP_463810.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes EGD-e]
 gi|16409644|emb|CAD00806.1| lmo0279 [Listeria monocytogenes EGD-e]
 gi|323676613|emb|CBZ41775.1| class III anaerobic ribonucleoside-triphosphate reductase catalytic
           subunit [Listeria monocytogenes EGD-e]
          Length = 710

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|254828739|ref|ZP_05233426.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
 gi|258601145|gb|EEW14470.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
          Length = 716

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|46906520|ref|YP_012909.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091416|ref|ZP_00229213.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|226222915|ref|YP_002757022.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes Clip81459]
 gi|254825669|ref|ZP_05230670.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|254853448|ref|ZP_05242796.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|254932506|ref|ZP_05265865.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|300764588|ref|ZP_07074580.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|46879785|gb|AAT03086.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47020093|gb|EAL10829.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|225875377|emb|CAS04074.1| Putative anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606817|gb|EEW19425.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|293584062|gb|EFF96094.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|293594913|gb|EFG02674.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|300514695|gb|EFK41750.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|328467888|gb|EGF38928.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 1816]
 gi|328476118|gb|EGF46827.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 220]
 gi|332310697|gb|EGJ23792.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. Scott A]
          Length = 716

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|313620854|gb|EFR92063.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL S4-378]
          Length = 311

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|145298237|ref|YP_001141078.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851009|gb|ABO89330.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 705

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVSQANPT-----------LGERVAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|15211861|emb|CAC51099.1| ribonucleotide reductase large subunit [Bacillus sp. M1918]
          Length = 104

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           +PD F++   ++  + +F P  V   +  Y  E  I  E Y+   
Sbjct: 61  VPDKFIELAREDKDYYMFYPHSVYKEYGQYLDEMSI-NEMYDELV 104


>gi|125718012|ref|YP_001035145.1| hypothetical protein SSA_1190 [Streptococcus sanguinis SK36]
 gi|125497929|gb|ABN44595.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
          Length = 112

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 57  ERATIS--MIQSMVESRLLGAGYITIAEHYISYRLQRDLERNGYGDHIAVHLHFEQVR 112


>gi|322385546|ref|ZP_08059190.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270284|gb|EFX53200.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
          Length = 112

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V          +  + K +        ++   
Sbjct: 1   MKVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDDLRQNLALVTKKVALDLEEAKVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 59  ----ATISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|298252649|ref|ZP_06976443.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
 gi|297533013|gb|EFH71897.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
          Length = 805

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
           +  VQV KR+G V  FDP  I  AI  AF  +  + G      +++I  ++  +   R  
Sbjct: 24  VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDLGKEVGPQEEQLIRNISDHIEAEIQDRY- 82

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                     IEDIQ  VE SL+++  +++ R Y  YR  R   RA  +           
Sbjct: 83  -----NGPAKIEDIQTLVEHSLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN---- 133

Query: 145 LKIMMDDGTLISFNSKR 161
            +++  D +L+  N+ +
Sbjct: 134 -RLVNRDESLVRENANK 149


>gi|290892573|ref|ZP_06555566.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
 gi|290557882|gb|EFD91403.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
          Length = 716

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|224282538|ref|ZP_03645860.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310286999|ref|YP_003938257.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|311063874|ref|YP_003970599.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Bifidobacterium bifidum PRL2010]
 gi|313139692|ref|ZP_07801885.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|309250935|gb|ADO52683.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|310866193|gb|ADP35562.1| NrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum PRL2010]
 gi|313132202|gb|EFR49819.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 794

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FDP  I  A+  AF  ++ +        + +I+   +Q    + +     
Sbjct: 18  VEKRDGRVVDFDPINIISAVKSAFADLDKQVGPEE---EKLIRGFADQIEGEITERY--N 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               IEDIQ+ VE +L+ +  + + R Y  YR ++   RA  +            + +  
Sbjct: 73  GPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAVS-----RFINQ 127

Query: 151 DGTLISFNSKR 161
           D TLI  N+ +
Sbjct: 128 DPTLIHENANK 138


>gi|217965627|ref|YP_002351305.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|217334897|gb|ACK40691.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|307569824|emb|CAR83003.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes L99]
          Length = 716

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|182420124|ref|ZP_02951358.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237669565|ref|ZP_04529545.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376161|gb|EDT73748.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237655009|gb|EEP52569.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 702

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI++AI     A E     +   V   +  +T+       +   
Sbjct: 2   LYVVKRDGREVEFNSDKIAQAIK--GSASEIGLTLKESEVLTTVAKVTDYIEIEYKK--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E IQ+ VE +L   GH  I   Y  YR+ER+ VR  +S
Sbjct: 57  ---SITVEQIQNFVERALQNQGHIDIAVAYSTYRKERTKVREIKS 98


>gi|146318383|ref|YP_001198095.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|146320575|ref|YP_001200286.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|145689189|gb|ABP89695.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|145691381|gb|ABP91886.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|292558174|gb|ADE31175.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           GZ1]
          Length = 124

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  FDP KI +AI+KA   V     +    +  + K +         +   
Sbjct: 13  MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVTKKVVLDLEEAHTER-- 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  +Q QVE  L+ +G+  I   Y+ YR +R   R 
Sbjct: 71  ----PTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERN 108


>gi|146301794|ref|YP_001196385.1| anaerobic ribonucleoside triphosphate reductase [Flavobacterium
           johnsoniae UW101]
 gi|146156212|gb|ABQ07066.1| anaerobic ribonucleoside-triphosphate reductase [Flavobacterium
           johnsoniae UW101]
          Length = 707

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    F+  KI  AI KAF +V                 + ++ +  +L   +  
Sbjct: 5   VIKRNGDYKPFEAYKIQDAIQKAFKSVNLP--------------MDKKILKIVLNGLEPK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +E+IQD +E  L ++G+ K  R +++YR  R   R   +    D      
Sbjct: 51  YSWPVEEIQDSIERVLFENGYFKTMRSFIIYRHTRKLQREHINGLNDDTTYVDS 104


>gi|283786925|ref|YP_003366790.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           rodentium ICC168]
 gi|282950379|emb|CBG90027.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           rodentium ICC168]
          Length = 712

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++ +   +           
Sbjct: 4   HVMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVSSQMNER---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  -SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|224498872|ref|ZP_03667221.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes Finland 1988]
          Length = 716

 Score = 92.5 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|168234575|ref|ZP_02659633.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736623|ref|YP_002117372.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712125|gb|ACF91346.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291908|gb|EDY31258.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 712

 Score = 92.5 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDAGYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|323448022|gb|EGB03926.1| hypothetical protein AURANDRAFT_7614 [Aureococcus anophagefferens]
          Length = 86

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L D +G EFE  YE YE +         + I A  LW  +L    +
Sbjct: 2   NGFWSLMCPNECPGLADCHGAEFEALYERYEAEGRAR-----KAIPAQQLWFAILDSQVK 56

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           TG P++ +KD CN +S Q+H+G + SSNLC
Sbjct: 57  TGTPYMLYKDACNDKSNQKHLGTIKSSNLC 86


>gi|213583801|ref|ZP_03365627.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 398

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|322388408|ref|ZP_08062011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
 gi|321140721|gb|EFX36223.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
          Length = 737

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V         R+  +++ + E+       H++  
Sbjct: 18  VEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSTLVERIVEEI------HSRFP 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             V I +IQ+ VE  L++   + +  EY+ YR +R   R+
Sbjct: 72  QGVKIYEIQNIVEHELLEVKEYALAEEYITYRTQRDFERS 111



 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +  A   P L +   DG  + F+  +++  + +A   + DV+           + ++ E 
Sbjct: 7   EEKAVPDPTLFVEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSTLVERIVEEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGVKIYEIQN 81


>gi|225351560|ref|ZP_03742583.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157904|gb|EEG71187.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 799

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  A  +++         V V KR+G V  FDP  I  A+  AF  ++ K   +    + 
Sbjct: 2   ETQALDAVSATVKTGTGKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQ 58

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +I+++  Q    +           IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 59  LIRDIANQVEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116

Query: 131 AQSHSKS 137
             +    
Sbjct: 117 KATDINE 123


>gi|152991850|ref|YP_001357571.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
 gi|151423711|dbj|BAF71214.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
          Length = 698

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  AI KAF +                K   +   T L++  K  
Sbjct: 5   IIKRDGASQKFVPFKIEDAIKKAFDS--------------EAKAYDKHVFTELMESIKDR 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD +E  L +  H ++ R ++LYR      R        D       + + +
Sbjct: 51  DEISVEEIQDLIEKVLYEHRHFEVMRSFILYRHMHKIQREQILGLNEDTTYINSTQTIKE 110


>gi|212715440|ref|ZP_03323568.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661615|gb|EEB22190.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
          Length = 799

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  A  +++         V V KR+G V  FDP  I  A+  AF  ++ K   +    + 
Sbjct: 2   ETQALNAVSATVKTGTGKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQ 58

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +I+++  Q    +           IEDIQ+ VE  L++   + + R Y  YR  +   RA
Sbjct: 59  LIRDIANQVEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERA 116

Query: 131 AQSHSKS 137
             +    
Sbjct: 117 KATDINE 123


>gi|153836863|ref|ZP_01989530.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
 gi|149749821|gb|EDM60566.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
          Length = 706

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------KDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|328470708|gb|EGF41619.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus 10329]
          Length = 706

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------KDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|91224720|ref|ZP_01259981.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
 gi|91190608|gb|EAS76876.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
          Length = 706

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         ++ 
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------RAH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|262395407|ref|YP_003287260.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
 gi|262339001|gb|ACY52795.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
          Length = 706

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------KDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|291086001|ref|ZP_06354610.2| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           youngae ATCC 29220]
 gi|291069121|gb|EFE07230.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           youngae ATCC 29220]
          Length = 707

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A     A     V +++ +L  +             
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSSLMNER-----------S 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|28900796|ref|NP_800451.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260365699|ref|ZP_05778213.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
 gi|260896111|ref|ZP_05904607.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|260902097|ref|ZP_05910492.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|28809242|dbj|BAC62284.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088140|gb|EFO37835.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|308109924|gb|EFO47464.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|308111794|gb|EFO49334.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
          Length = 706

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------KDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|313611065|gb|EFR85944.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL F2-208]
          Length = 603

 Score = 92.1 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|311114309|ref|YP_003985530.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
 gi|310945803|gb|ADP38507.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
          Length = 817

 Score = 92.1 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           VQV KR+G V  FD   I  AI  AF  +  + G      ++DI  ++  +   R     
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQEEQMIRDITDHIEAEIQDRY---- 94

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                  IEDIQ  VE  L+++  +++ R Y  YR  R   RA  +            ++
Sbjct: 95  --NGPAKIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN-----RL 147

Query: 148 MMDDGTLISFNSKR 161
           +  D +L+  N+ +
Sbjct: 148 VNRDESLVRENANK 161


>gi|15211874|emb|CAC51106.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 104

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAAYLSVFHPDIIDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           IPD F++   ++  + +F P  V   +  Y  E  I  E Y+   
Sbjct: 61  IPDKFIELAREDKDYYMFYPHSVYKEYGQYLDEMSI-NEMYDELV 104


>gi|302669117|ref|YP_003832942.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
 gi|302397457|gb|ADL36360.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
          Length = 751

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    FD  K+  AI KA  A   +    SI +  I  ++ E     +     
Sbjct: 1   MYIIKRNGTEVEFDIEKVKTAISKANEASSERARMNSIYIDAIASDVEEYANNTV----- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               + +EDI D++E  LM+    ++ + ++ YR  R+ VR A +  ++   +  +
Sbjct: 56  --ATLTVEDISDKIELLLMKM-APEVAKNFMNYRHNRALVRKANTTDETILSLIER 108


>gi|311281208|ref|YP_003943439.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae SCF1]
 gi|308750403|gb|ADO50155.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae SCF1]
          Length = 711

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F  ++I  AI++A  A     A     V +++            Q  + 
Sbjct: 4   HVMKRDGCKVPFTSARIQEAILRAASAAGVDDADYCATVAEVVS-----------QQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  REQVDISEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 101


>gi|269959772|ref|ZP_06174151.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
 gi|269835526|gb|EEZ89606.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
          Length = 706

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------QDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|153832814|ref|ZP_01985481.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
 gi|148870948|gb|EDL69838.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
          Length = 706

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------QDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|269967747|ref|ZP_06181795.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
 gi|269827653|gb|EEZ81939.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
          Length = 706

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I       N+      +L +H++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIY----ALNVALAVELQLREHDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 56  --VHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|283852526|ref|ZP_06369794.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572134|gb|EFC20126.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 682

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A   +    + R+   ++              + 
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKALKASGIQDPLLATRLAHKVEC-----------KLED 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     A +   
Sbjct: 53  EDVPEQERVQDAVELVLMESRLFGVARRYIVYREKRRELREQKAAFLDIADVIDT 107


>gi|325694491|gb|EGD36400.1| ATP cone domain protein [Streptococcus sanguinis SK150]
          Length = 112

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          +  + K +        ++   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDDLRQNLAQVTKKVALDLEEAKVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R       +      +++
Sbjct: 59  ----ATISMIQSMVESRLLGAGYITIAEHYISYRLQRDLERNGYGDHIAVHLHFEQVR 112


>gi|156976928|ref|YP_001447834.1| anaerobic ribonucleoside triphosphate reductase [Vibrio harveyi
           ATCC BAA-1116]
 gi|156528522|gb|ABU73607.1| hypothetical protein VIBHAR_05713 [Vibrio harveyi ATCC BAA-1116]
          Length = 706

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    E K    +I   ++   +  Q         +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------QDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 103


>gi|296876485|ref|ZP_06900536.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432478|gb|EFH18274.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
          Length = 112

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MEVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 57  ERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|34763888|ref|ZP_00144791.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886336|gb|EAA23608.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 728

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 103/296 (34%), Gaps = 47/296 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD S+I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166

Query: 203 ---IFSSRTLIEK--------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
                     IE               EPN   V    ++ ++   V +  Y        
Sbjct: 167 FRETNCELVNIETMLRGGCNIGNAKMLEPNSVDVAVGHIV-QIIASVSSNTYGGCSIPYL 225

Query: 246 HEMQCLY-PEYFCRYIEEGV-KARLLHESMMDF----DLVYLANDLKYERDFAFEY 295
                 Y  + F ++   GV     L+E  ++     DL YL  ++K +    +EY
Sbjct: 226 DRALVRYIKKTFKKHFLRGVKYIDDLNEEQIEELKKQDLEYLNEEIKNKYPKTYEY 281


>gi|223932456|ref|ZP_03624458.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|253751528|ref|YP_003024669.1| ATP-binding protein [Streptococcus suis SC84]
 gi|253753429|ref|YP_003026570.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|253755743|ref|YP_003028883.1| ATP-binding protein [Streptococcus suis BM407]
 gi|330832683|ref|YP_004401508.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
 gi|223898910|gb|EEF65269.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|251815817|emb|CAZ51425.1| ATP-binding protein [Streptococcus suis SC84]
 gi|251818207|emb|CAZ56008.1| ATP-binding protein [Streptococcus suis BM407]
 gi|251819675|emb|CAR45457.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|319757960|gb|ADV69902.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis JS14]
 gi|329306906|gb|AEB81322.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
          Length = 112

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  FDP KI +AI+KA   V     +    +  + K +         +   
Sbjct: 1   MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVTKKVVLDLEEAHTER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 I  +Q QVE  L+ +G+  I   Y+ YR +R   R 
Sbjct: 59  ----PTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERN 96


>gi|119026234|ref|YP_910079.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765818|dbj|BAF39997.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 801

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
            PE +K + V KR+G V  FDP  I  A+  AF  ++ K   +  R   +I+++  Q   
Sbjct: 16  APEMVKVL-VEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEER---LIRDIANQVEA 71

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +    
Sbjct: 72  EIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDINE 125


>gi|154489082|ref|ZP_02029931.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
 gi|154083219|gb|EDN82264.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
          Length = 801

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
            PE +K + V KR+G V  FDP  I  A+  AF  ++ K   +  R   +I+++  Q   
Sbjct: 16  APEMVKVL-VEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEER---LIRDIANQVEA 71

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
            +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +    
Sbjct: 72  EIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDINE 125


>gi|315645811|ref|ZP_07898932.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
 gi|315278572|gb|EFU41886.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
          Length = 742

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G + +F+ S+I +A+ KAF+AVEG    ++            +   R      
Sbjct: 1   MKVMKRDGCLVNFEMSRIVKAVDKAFIAVEGASREQA----------ALEIGVRAAHIAA 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
               V +E+IQD V   L  SG+ ++   Y  YRE R   R  +  
Sbjct: 51  GMDQVTVEEIQDIVVEHLQSSGYTEVAAAYQQYREIRDLERVRRGE 96


>gi|294785007|ref|ZP_06750295.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
 gi|294486721|gb|EFG34083.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
          Length = 728

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTFE------QASREPNMKLIEKIASQVED------LP 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R       +   +       K
Sbjct: 51  DKVLSVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIREREKGIYKQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|319947078|ref|ZP_08021312.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|322389596|ref|ZP_08063145.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
 gi|319747126|gb|EFV99385.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|321143722|gb|EFX39151.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
          Length = 118

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   ++VIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L 
Sbjct: 3   KENKMEVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLE 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +       +    IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +
Sbjct: 59  EAKVERATIS--MIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQ 116

Query: 145 LK 146
           ++
Sbjct: 117 IR 118


>gi|298527845|ref|ZP_07015249.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511497|gb|EFI35399.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 682

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + S+   +I+ AI+KA  A   K    + R       L  +   +L +    
Sbjct: 4   QIKKRDGCMESWSTDRIAHAILKALKASGIKDPLLASR-------LARKVEGKLHEDIPE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                 E +QD VE  LM+S  +   ++Y++YRE+R ++R       +   I        
Sbjct: 57  Q-----ETVQDMVEMVLMESRLYDAAKKYIIYREKRRELRCQDQAYLNIGEIIDSYVYKS 111

Query: 150 D 150
           D
Sbjct: 112 D 112


>gi|313625297|gb|EFR95116.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL J1-023]
          Length = 196

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|260913068|ref|ZP_05919550.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632655|gb|EEX50824.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
          Length = 708

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  A+ KA  AV             I + ++++  T         
Sbjct: 6   VIKRDGSRASFEVQRIINAVKKAAEAVN---IDNEHYCHTIGQRVSDEIFTGYQNE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM   + +I R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDISHIQKIVENQLMSGQYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|294678858|ref|YP_003579473.1| anaerobic ribonucleoside-triphosphate reductase [Rhodobacter
           capsulatus SB 1003]
 gi|294477678|gb|ADE87066.1| anaerobic ribonucleoside-triphosphate reductase [Rhodobacter
           capsulatus SB 1003]
          Length = 676

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 34  RNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIV 93
           R+G +  FD  +I  A+ +A  A    GA+ +       ++LT+  + RL      A   
Sbjct: 20  RDGALVPFDARRIVAALARAGDASGEFGAAEA-------RDLTQAVLDRL-ALLAPASPP 71

Query: 94  HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +E IQ+ VE  L  + H    R Y +YR++ + +RA   
Sbjct: 72  DVETIQNMVEAVLADTAHVATARAYAVYRDQHARLRADNR 111


>gi|171742360|ref|ZP_02918167.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283456546|ref|YP_003361110.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium Bd1]
 gi|171277974|gb|EDT45635.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283103180|gb|ADB10286.1| nrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium dentium Bd1]
          Length = 799

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           ++        + V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+ + 
Sbjct: 8   AMNATSATTAEKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQMIRGIA 64

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q    + +         IEDIQ+ VE  L++   + + R Y  YR  +   RA  +   
Sbjct: 65  NQVEAEIKERY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDIN 122

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKR 161
                    +++  D +L+  N+ +
Sbjct: 123 EAVS-----RLVNRDESLVRENANK 142


>gi|306822273|ref|ZP_07455654.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|309802805|ref|ZP_07696907.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304554435|gb|EFM42341.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|308220558|gb|EFO76868.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 799

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           ++        + V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+ + 
Sbjct: 8   AMNATSATTAEKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQMIRGIA 64

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q    + +         IEDIQ+ VE  L++   + + R Y  YR  +   RA  +   
Sbjct: 65  NQVEAEIKERY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDIN 122

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKR 161
                    +++  D +L+  N+ +
Sbjct: 123 EAVS-----RLVNRDESLVRENANK 142


>gi|237742481|ref|ZP_04572962.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
 gi|229430129|gb|EEO40341.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
          Length = 728

 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 102/296 (34%), Gaps = 47/296 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD S+I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166

Query: 203 ---IFSSRTLIEK--------------EPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
                     IE               EPN   V    ++ ++   V +  Y        
Sbjct: 167 FRETNCELVNIETMLRGGCNIGNAKMLEPNSVDVAVGHIV-QIIASVSSNTYGGCSIPYL 225

Query: 246 HEMQCLY-PEYFCRYIEEG-VKARLLHESMMDF----DLVYLANDLKYERDFAFEY 295
                 Y  + F ++   G      L+E  ++     DL YL  ++K +    +EY
Sbjct: 226 DRALVRYIKKTFKKHFLRGAKYIDDLNEEQIEELKKQDLEYLNEEIKNKYPKTYEY 281


>gi|91792777|ref|YP_562428.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           denitrificans OS217]
 gi|91714779|gb|ABE54705.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           denitrificans OS217]
          Length = 704

 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  A++ A  +   +    +  + + ++           Q  +  
Sbjct: 4   VIKRDGCRTVFNAERIQEAVIAAMASANKQDVDYACTLAEQVR-----------QQMQGK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I ++QD VE  LM   +  + R Y+ YR +R   R A+S     
Sbjct: 53  REVDIHELQDAVENLLMAGPYKAVARHYIEYRHDRDLCREAKSKLNQQ 100


>gi|254302715|ref|ZP_04970073.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322907|gb|EDK88157.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 728

 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD ++I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDRNRIINAIRKTFEQASREPNMKLLEKIASQVEDLPDKVL-------- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 55  -----SVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIREREKGIYRQIGELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIIPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|282851877|ref|ZP_06261238.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556977|gb|EFB62578.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 114

 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 45/101 (44%)

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
              +K N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +LA+
Sbjct: 7   PSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAE 66

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             GA+  FK S +  G +    I      + +      ++ 
Sbjct: 67  TYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKY 107


>gi|187735364|ref|YP_001877476.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425416|gb|ACD04695.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 698

 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
              +IKR+G    +   KI  AI KAF +                +++ E+   +L    
Sbjct: 2   ATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYN----------RSIYEEVEAKL---- 47

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 H+E+IQD +E +L +SG+    + ++ YR      R  
Sbjct: 48  SHQDSAHVEEIQDMIERALFRSGYFDTAKAFITYRFLHKMQREQ 91


>gi|325680853|ref|ZP_08160391.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324107633|gb|EGC01911.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 723

 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ KA  A       +     + I ++T+    +    NK
Sbjct: 1   MKIIKRNGAEEIFDQSKIINAVKKANFA-----GEKGRISDEEIADVTDYVEYKC---NK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  LGRAVSVEEIQDMVENQLMAKGAFELA 79


>gi|188996398|ref|YP_001930649.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931465|gb|ACD66095.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 703

 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F P KI  AI KAF +V                   E     +L   K
Sbjct: 1   MFIIKRDGLAQEFMPYKIKDAIEKAFKSVNQTFD--------------EIIYNNVLTTLK 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
              +  +E+IQD +E  L ++G+ ++ R ++LYR  R   R        D     
Sbjct: 47  QKDVWTVEEIQDLIEKELFRAGYFEVMRSFMLYRHTRKLQREHILGLNDDTTYID 101


>gi|182413606|ref|YP_001818672.1| ATP-cone domain-containing protein [Opitutus terrae PB90-1]
 gi|177840820|gb|ACB75072.1| ATP-cone domain protein [Opitutus terrae PB90-1]
          Length = 842

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--------- 69
           A P   ++    VIKR+G    FD SK++RA+  AF  V    A    R           
Sbjct: 31  AIPADARM----VIKRDGSKVRFDQSKVTRALALAFHEVRTDNAPNPYRDHLLACFGLDT 86

Query: 70  ---DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
              + +  ++      L  + +      IE +QD  E ++  +GH ++ R Y+LYR   +
Sbjct: 87  ETFNEVSRISGAVAQMLELYYRDGKHPSIEQVQDAAEKAIAAAGHWEVARAYMLYRARHA 146

Query: 127 DVRAAQ--SHSKSDAPIAPKLKIMMDD-GTLISF 157
           + R A    +  +D     K      D G    F
Sbjct: 147 ERRLAHYVDNGMADYIAMAKYARYRPDLGRREIF 180



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 136/436 (31%), Gaps = 87/436 (19%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D + G   AL    M       +  D++ +R  G+ +  + GK+ G +P  K      
Sbjct: 326 IEDTIEGWSDALHALIMSFYEGTKIEFDYSRIRPRGSLLKTSGGKAPGHLPLKKALGKVE 385

Query: 436 VAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             +++   R    +  Y      D+  F+      G  RR                    
Sbjct: 386 ALLHEAAGRALRPIEVY------DLNMFIAKAVLAGGIRRSATIC--------------- 424

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
                 LFSPD+   ++   G  F+    +  R A      + R    +  ++K+     
Sbjct: 425 ------LFSPDDEEMMNAKTGNWFDK---HPHRSASNNSAVLSRSDKNIEHFKKLFKAQK 475

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           E G P   F D           G     N C EI L           L    +   FAN 
Sbjct: 476 EFGEPGFFFNDH-------PDAG----CNPCAEINLLP----VVNWELSQDEVAKLFANG 520

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI-GLGLMGFQSALHLLHIP 673
                 L  T R +     N+  IN    + A      ++A     ++G   A     +P
Sbjct: 521 Y--KGDLPGTTRLSGFQHCNLTTIN---GQAATTETAFYKACIAATVIGTLQA-AYTDMP 574

Query: 674 YASPEAVEIADESMEFISFH--AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           Y  P          + I+ H   +  S+           F  +    GV           
Sbjct: 575 YLGP--------ITKLINEHDSLLGVSI---------CGFMDNP---GVLF--------- 605

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA-PTATIANICGVSQSIDPSYQNLY 790
             D+  +   ++L     +   K IG++ +  ++   P  T + I G +  I P +   Y
Sbjct: 606 --DQEILTSGAKLCRATNRLVAKLIGIQPAAKLSTCKPEGTASLILGAASGIHPHHARRY 663

Query: 791 VKSNMSGDFTVVNSFL 806
            +   +     + +F 
Sbjct: 664 FRRVQANRKEPIYAFF 679


>gi|46190969|ref|ZP_00120770.2| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
 gi|189440791|ref|YP_001955872.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum DJO10A]
 gi|189429226|gb|ACD99374.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
          Length = 802

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q 
Sbjct: 15  TKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQV 71

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              + +    A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA     K+  
Sbjct: 72  EGEIKERY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA-----KATD 124

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 + +  D TLI  N+ +
Sbjct: 125 VNEAVARFINHDPTLIHENANK 146


>gi|300928061|ref|ZP_07143611.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 187-1]
 gi|300463908|gb|EFK27401.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 187-1]
          Length = 707

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQDRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|459403|gb|AAC43383.1| ribonucleoside triphosphate reductase [Escherichia coli]
          Length = 229

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A E   A     V  ++            +  + 
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 101


>gi|313646436|gb|EFS10898.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 2457T]
          Length = 708

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 2   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVN-----------EQMQGRN 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 97


>gi|300916607|ref|ZP_07133328.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 115-1]
 gi|300416091|gb|EFJ99401.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 115-1]
          Length = 707

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|157147776|ref|YP_001455095.1| anaerobic ribonucleoside triphosphate reductase [Citrobacter koseri
           ATCC BAA-895]
 gi|157084981|gb|ABV14659.1| hypothetical protein CKO_03580 [Citrobacter koseri ATCC BAA-895]
          Length = 707

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A     A     V +++ N   +             
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSNQMNER-----------S 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|116516887|ref|YP_815706.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae D39]
 gi|116077463|gb|ABJ55183.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae D39]
          Length = 735

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+  A   V       +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHTAADKV----MDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 109



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  +  A   + DV+           + +++E 
Sbjct: 5   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIITEI 64

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 65  HSRFPQGIKIYEIQN 79


>gi|320541289|ref|ZP_08040588.1| putative ribonucleoside diphosphate reductase 1, alpha subunit
           [Serratia symbiotica str. Tucson]
 gi|320028648|gb|EFW11028.1| putative ribonucleoside diphosphate reductase 1, alpha subunit
           [Serratia symbiotica str. Tucson]
          Length = 81

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +   DG     N  ++  +++ A  GL ++S   V   ++   YDG+  +D+  
Sbjct: 1   MNQSLLVTKRDGRKERINLDKIHRVIDWAAEGLNNISVSQVELRSHIQFYDGIKTADIHE 60

Query: 201 ALIFSSRTLIEKE-PNYAKVT 220
            +I ++  LI ++ P+Y  + 
Sbjct: 61  TIIKAAADLISRDAPDYQYLA 81


>gi|227886709|ref|ZP_04004514.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           83972]
 gi|300987086|ref|ZP_07177993.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 45-1]
 gi|300988327|ref|ZP_07178623.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 200-1]
 gi|301048558|ref|ZP_07195575.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 185-1]
 gi|227836282|gb|EEJ46748.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           83972]
 gi|300299602|gb|EFJ55987.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 185-1]
 gi|300305945|gb|EFJ60465.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 200-1]
 gi|300407781|gb|EFJ91319.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 45-1]
 gi|315288409|gb|EFU47807.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 110-3]
 gi|315293597|gb|EFU52949.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 153-1]
 gi|315299003|gb|EFU58257.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 16-3]
 gi|324005185|gb|EGB74404.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 57-2]
 gi|324013749|gb|EGB82968.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 60-1]
          Length = 707

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|15902227|ref|NP_357777.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae R6]
 gi|15457727|gb|AAK98987.1| Ribonucleotide reductase, class III, anaerobic [Streptococcus
           pneumoniae R6]
          Length = 737

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+  A   V       +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHTAADKV----MDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERS 111



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P L +   DG  + F+  +++  +  A   + DV+           + +++E 
Sbjct: 7   EEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIITEI 66

Query: 186 YKNMYDGLSESDLET 200
           +     G+   +++ 
Sbjct: 67  HSRFPQGIKIYEIQN 81


>gi|78358056|ref|YP_389505.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220461|gb|ABB39810.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 685

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G + ++   +I+ AI K+  A   K              L+++   ++ +    
Sbjct: 4   HILKRDGRLETWSTDRIAGAIFKSLKASGIKDPL-----------LSKRLARKVEEKLND 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 E +QD V+  LM++  + +   Y++YRE+R ++R+        + +   
Sbjct: 53  EDTPEQERVQDMVQQVLMEARLYNVAERYIIYREKRREMRSQGQAYLDISQMIES 107


>gi|256544963|ref|ZP_05472333.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399350|gb|EEU12957.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           vaginalis ATCC 51170]
          Length = 706

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+KRNG    FD  KI  AI KA  +  G            I+N  E+    + +  +
Sbjct: 2   VKVVKRNGQKVDFDKEKIKIAIEKAMNSPNGVY----------IENQAEKIADEIEKRAE 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + I  I+DQV   L+   +    + Y  YR   +  R A +       +  +  I 
Sbjct: 52  NKREISIYQIEDQVYYKLIDKKNPATAKSYEAYRSVHAYKREANTTDDDIIGLLERTNID 111

Query: 149 MDD 151
           + D
Sbjct: 112 VMD 114


>gi|301024457|ref|ZP_07188137.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 69-1]
 gi|300396589|gb|EFJ80127.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 69-1]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|261405435|ref|YP_003241676.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
 gi|261281898|gb|ACX63869.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
          Length = 744

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-ASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G +  F+  +I  A+ +AFMAVEG      S+R+ D + + T           
Sbjct: 1   MKVMKRDGCLVKFETIRIVEAVDRAFMAVEGVSRKDASLRIGDEVAHATA---------- 50

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                V +E+IQD V   L  +G+ ++   Y  YRE R   R  +  
Sbjct: 51  -GMEQVSVEEIQDIVVEHLQSTGYPEVASAYQHYREARDLERMRRGE 96


>gi|118474565|ref|YP_891231.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413791|gb|ABK82211.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 689

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 16/110 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G +  F   KI  AI KA+ +   +  +           L ++ ++ +     
Sbjct: 1   MKIIKRDGSLQDFASYKIENAITKAYKSALKEPNTA----------LIKKVLSEVKDKM- 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
                 +E+IQD +E +L  SG   + R ++LYR   +  R  +   ++ 
Sbjct: 50  -----SVEEIQDIIEKALFDSGDFTVMRNFMLYRHTHTMQRDGELDERTT 94


>gi|300818539|ref|ZP_07098748.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 107-1]
 gi|300528943|gb|EFK50005.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 107-1]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|322804365|emb|CBZ01915.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Clostridium botulinum H04402 065]
          Length = 713

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G     D  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEIDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|309784144|ref|ZP_07678784.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1617]
 gi|308928007|gb|EFP73474.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1617]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|301646694|ref|ZP_07246557.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 146-1]
 gi|309792876|ref|ZP_07687304.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 145-7]
 gi|301075102|gb|EFK89908.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 146-1]
 gi|308123162|gb|EFO60424.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 145-7]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|300821341|ref|ZP_07101489.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 119-7]
 gi|300899378|ref|ZP_07117636.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 198-1]
 gi|300906083|ref|ZP_07123803.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 84-1]
 gi|301304713|ref|ZP_07210821.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 124-1]
 gi|300357023|gb|EFJ72893.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 198-1]
 gi|300402091|gb|EFJ85629.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 84-1]
 gi|300526230|gb|EFK47299.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 119-7]
 gi|300840063|gb|EFK67823.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 124-1]
 gi|315255593|gb|EFU35561.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 85-1]
 gi|324019287|gb|EGB88506.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 117-3]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|300922868|ref|ZP_07138951.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 182-1]
 gi|300935905|ref|ZP_07150861.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 21-1]
 gi|300950236|ref|ZP_07164175.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 116-1]
 gi|300957147|ref|ZP_07169386.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 175-1]
 gi|301329263|ref|ZP_07222240.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 78-1]
 gi|300316091|gb|EFJ65875.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 175-1]
 gi|300420817|gb|EFK04128.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 182-1]
 gi|300450426|gb|EFK14046.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 116-1]
 gi|300458924|gb|EFK22417.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 21-1]
 gi|300844423|gb|EFK72183.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 78-1]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++            +  +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVS-----------EQMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQE 96


>gi|226947317|ref|YP_002802408.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842007|gb|ACO84673.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 713

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G     D  KIS AI  A   +       S  +     +LT++ + ++   NK
Sbjct: 2   LYVVKRDGRKVEIDVVKISNAIKGAAEEI-AFDMKESENI-----SLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMT 102


>gi|261337705|ref|ZP_05965589.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277150|gb|EFA23004.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
          Length = 798

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G +  FDP  I  A+  AF  ++ + G      ++DI K +  +   R       
Sbjct: 22  VEKRDGRIVDFDPINIVVAVKSAFDDLDKEVGPQEEGMIRDIAKQVEGEIKARY------ 75

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IEDIQ+ VE +L++   + + R Y  YR  +   RA  +            +++ 
Sbjct: 76  NGPAKIEDIQNLVEHALIEDHLYDVARTYTNYRLNKDIERAKATDINEAVK-----RLVN 130

Query: 150 DDGTLISFNSKR 161
            D +L+  N+ +
Sbjct: 131 KDESLVRENANK 142


>gi|15211868|emb|CAC51103.1| ribonucleotide reductase large subunit [Bacillus sp. M1321]
          Length = 104

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 52/102 (50%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +PD F++   ++  + +F P  V   +  Y  E +I     E
Sbjct: 61  VPDKFIELAREDKDYYMFYPHSVYKEYGQYLDEMDINKMYDE 102


>gi|257463668|ref|ZP_05628058.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 750

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF           +  ++++  +  Q        N  
Sbjct: 20  KVIKRDGTVIDFDAQRIVNAISMAFK------QHSRVIPEELVSKIAHQI------ENLE 67

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             I+ +E+IQD V   LM S    I   Y  YR  ++++R       +   +        
Sbjct: 68  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNES 127

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           L I   +    + + +R L   +      L  +  + +     K    
Sbjct: 128 LLIENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKGEIH 175


>gi|288550521|ref|ZP_05970770.2| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314816|gb|EFC53754.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 707

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A     A     V +I+ +   +             
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEIVSSQMNER-----------S 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 96


>gi|88799250|ref|ZP_01114829.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
 gi|88778009|gb|EAR09205.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
          Length = 709

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F   +I++AI+ A +A     A            L +Q  + + Q  K  
Sbjct: 5   VTKRDGHVVPFYRPRITQAILNAMIAKNQVDAP-----------LADQLSSNVEQFFKDQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V IE +Q QVE  L+Q+    + R Y+ YR++R   R  +S    +
Sbjct: 54  TRVDIEQVQQQVEAELIQAALVPVARAYIRYRQQRDLARDRRSQLTRN 101


>gi|326790793|ref|YP_004308614.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541557|gb|ADZ83416.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 705

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +F+ +KI  AI+++   VE         V   I ++T +   R+       
Sbjct: 5   VIKRDGRKVTFNTTKIENAILRSAKNVE---------VDIPISDITSKVTGRIQDLYSYE 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E IQD +E +LM      +   Y  YR+ER+ +R  +S       
Sbjct: 56  --ITVEQIQDVIEDTLMDLQLEALKNSYANYRKERTRIRDLKSELMDTVH 103


>gi|256845818|ref|ZP_05551276.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
 gi|256719377|gb|EEU32932.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
          Length = 728

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD S+I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +  S+       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQISELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|9630433|ref|NP_046865.1| gp50 [Mycobacterium phage D29]
 gi|6136221|sp|O64240|VG50_BPMD2 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|3172297|gb|AAC18490.1| putative ribonucleotide reductase [Mycobacterium phage D29]
          Length = 693

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 95/530 (17%), Positives = 153/530 (28%), Gaps = 132/530 (24%)

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L    G       LAK    +    +     G      +G +   +  +++ +  A  V 
Sbjct: 213 LKTFGGTASGPVPLAKMLTEVSEILSRCAREGEQYRFEDGGALTGLDAMEIDHAIAQCVV 272

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
            GG R+ A  A +      VE F ++++++G         N +  + D F          
Sbjct: 273 AGGVRRSARMAMMHWADWQVETFTNIKQDSGSH----WTTNISVEVDDAFWSLAKA---- 324

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                                            +    R   A  + + +       G P
Sbjct: 325 -------------------------------PVDPLNPRSTKAHRVLKALSEGAVRNGEP 353

Query: 560 WITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQ 615
            +         S   +VG    V  +N C EITL         CNLG INL A   +  +
Sbjct: 354 GMW-------DSSLSNVGEPNEVVCTNPCGEITLEPWEP----CNLGHINLAAFVTDAGK 402

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY- 674
            DY  L    R   R L      +     K+++    +R IG+G +G  S L L    Y 
Sbjct: 403 TDYIDLIRAHRLMTRFLIR-ATFSAVADPKSREVLDRNRRIGVGHLGVASYLALTGRRYS 461

Query: 675 ---ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
                        E    +   A   S EL                              
Sbjct: 462 QAPGDKRFTAFLREMAAEVDRAAEEFSHEL------------------------------ 491

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      R+P    K+ V   G             TIA + GVS+ I P +   ++
Sbjct: 492 -----------RIPVPVKKRTVAPTG-------------TIAKMPGVSEGIHPIFSRYFI 527

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------------- 838
           +          + FL       D +    +   +Y       +  IP             
Sbjct: 528 RRIRF-SVLDNDQFLTASQYAADGYH---VEKDQYDKSGNTWVVEIPTKDTLVEAVAARF 583

Query: 839 -DDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLD 886
             D + I  +A E+    L+   +  Q  W D A S    +D  + + +D
Sbjct: 584 GRDAEDIVESANELTLHQLLAFQALYQTCWADNAVSFTANVDPDAYEGVD 633


>gi|149194704|ref|ZP_01871799.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
 gi|149135127|gb|EDM23608.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
          Length = 698

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G + ++ P KI  AI KAF A + +       V + + NL ++           
Sbjct: 3   KVIKRDGRIDNYVPYKIEEAIKKAFKATKVEYDPL---VYEEVINLLKKV---------- 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E IQD +E SL + G+  + + ++LYR      R 
Sbjct: 50  -DTPEVEFIQDLIEKSLYKHGYFDVMKNFMLYRHLHKLQRE 89


>gi|161505067|ref|YP_001572179.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866414|gb|ABX23037.1| hypothetical protein SARI_03201 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 707

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A     A     V +++                +  
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNARS 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|329926784|ref|ZP_08281192.1| ATP cone domain protein [Paenibacillus sp. HGF5]
 gi|328938984|gb|EGG35352.1| ATP cone domain protein [Paenibacillus sp. HGF5]
          Length = 154

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-ASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G +  F+ S+I  A+ KAFMAVEG      S+R+ D + + T           
Sbjct: 1   MKVMKRDGCLVKFETSRIVEAVDKAFMAVEGVSRKDASLRIGDEVAHATA---------- 50

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                V +E+IQD V   L  +G+ ++   Y  YRE R   R  +  
Sbjct: 51  -GMEQVSVEEIQDIVVEHLQSTGYPEVAAAYQHYREARDLERMRRGE 96


>gi|15893771|ref|NP_347120.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023339|gb|AAK78460.1|AE007562_7 Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium acetobutylicum ATCC 824]
 gi|325507894|gb|ADZ19530.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 702

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD +KI  AI  A   +        I+  DI++ LT++ + R+     
Sbjct: 2   LNVVKRDGRQVVFDSNKIFNAIKGAADEIG-----YDIKQSDILE-LTQKVIGRVEDLKI 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E++Q+ VE  L+++G+ +I   Y  YR+ER+ VR  +S
Sbjct: 56  RE--ISVEEVQNLVEEVLLENGNKEIGMAYCTYRKERTKVREIKS 98


>gi|296327376|ref|ZP_06869925.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155491|gb|EFG96259.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 728

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD S+I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|19703656|ref|NP_603218.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713772|gb|AAL94517.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 728

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD S+I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNE 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|317061216|ref|ZP_07925701.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
 gi|313686892|gb|EFS23727.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 741

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF           +  ++++  +  Q        N  
Sbjct: 11  KVIKRDGTVIDFDAQRIVNAISMAFK------QHSRVIPEELVSKIAHQI------ENLE 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             I+ +E+IQD V   LM S    I   Y  YR  ++++R       +   +        
Sbjct: 59  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNES 118

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           L I   +    + + +R L   +      L  +  + +     K    
Sbjct: 119 LLIENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKGEIH 166


>gi|312866583|ref|ZP_07726798.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
 gi|311097882|gb|EFQ56111.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
          Length = 112

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  F+P KI +AI+KA   V          +  + K +        ++   
Sbjct: 1   MEVIKRSGEVVEFNPDKIYQAILKAAQVVYVLTDDLRQNLAQVTKKVAMDLDEAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R+      +      +++
Sbjct: 59  ----ATISMIQSLVEQRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLHFEQIR 112


>gi|46581351|ref|YP_012159.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601471|ref|YP_965871.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46450773|gb|AAS97419.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561700|gb|ABM27444.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311235010|gb|ADP87864.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 689

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G V ++   +++ AI KA  A   K      R+   ++   E            
Sbjct: 4   KILKRDGRVETWSVDRVAHAINKALKASGIKDPLLGKRLASRVEAKLEDV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 E +QD V+  LM++  + +   Y++YRE+R ++R         A +   
Sbjct: 54  -DAPEQEHVQDMVQRVLMEARLYAVAERYIIYREKRREMRNQNQAYLDIARMIES 107


>gi|167821507|ref|ZP_02453187.1| hypothetical protein Bpse9_40693 [Burkholderia pseudomallei 91]
          Length = 252

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 59/180 (32%), Gaps = 9/180 (5%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +  F                ++SCF+  +  P  L         AL E  +
Sbjct: 70  ARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                  +G D++ +   GA     +  S GV   L   +       +   R+ A  A L
Sbjct: 130 ALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVL 189

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS---PDEVSD 509
              H D+  F   +        R   +  A    D FM+ V Q+  WTL     P +   
Sbjct: 190 RCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHTAPPRDAPG 249


>gi|268678694|ref|YP_003303125.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616725|gb|ACZ11090.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 701

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 14/122 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G    F P KI  AI KAF +                    E   T +L+  +
Sbjct: 3   TKVLKRDGTTEEFQPYKIEDAIKKAFKSEGVMYD--------------ESIYTEILKRIE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +ED QD +E  L ++ +  + R ++LYR      R        D       + +
Sbjct: 49  KKRVAAVEDFQDMIEQELYKARYFDVMRSFILYRHTHKMQREHIYGLSEDTTYINSTQTI 108

Query: 149 MD 150
            +
Sbjct: 109 EE 110


>gi|294661640|ref|YP_003580093.1| NrdD anaerobic ribonucleotide reductase subunit [Klebsiella phage
           KP15]
 gi|292660801|gb|ADE35049.1| NrdD anaerobic ribonucleotide reductase subunit [Klebsiella phage
           KP15]
          Length = 707

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FD  KI  A+ KA     G        +  +           L    +
Sbjct: 1   MKVEKRDGTIVDFDQEKIRNAVYKA----GGTMTDEDSAIMLV-----------LRSQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + I  IQ+ VE SLM++    + R Y+ YR +R   R        D
Sbjct: 46  DGKAMKISQIQELVEESLMKTN-PTVARAYIEYRHDRDIAREQNGKLFRD 94


>gi|255528304|ref|ZP_05395116.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
 gi|255508006|gb|EET84434.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
          Length = 700

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KI+ AI  +   + G     S  ++     LT++ + +L + + 
Sbjct: 2   LHVVKRDGREVEFDSIKITNAIKGSSEEI-GYDLKESEFIE-----LTQKVIKQLEELDA 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   +++E IQ+ VE +L+++ + +I   Y  YR+ER+ +R  +S
Sbjct: 56  NE--INVEQIQNFVEKTLLENDYREIGTAYCNYRKERNKIREIKS 98


>gi|328543068|ref|YP_004303177.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412814|gb|ADZ69877.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 145

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + +D    +  A+EI P  +I++ +   + +DQ  SL L+  D  + + ++     AW
Sbjct: 56  PFMTNDNLDYYRDAYEIGPEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINRAQIHAW 115

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGV 919
             G+KT YY+R R    +E + ++G 
Sbjct: 116 KKGIKTIYYIRLRQMA-LEGTEVQGC 140


>gi|294782022|ref|ZP_06747354.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Fusobacterium sp. 1_1_41FAA]
 gi|294481833|gb|EFG29602.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Fusobacterium sp. 1_1_41FAA]
          Length = 161

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 37/178 (20%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+   + V+  G+RN    AIAP  + + + G + S+ P++   +++ N  G        
Sbjct: 14  WE--VQLVEANGLRNGELTAIAPNTSTSLLMGSTASVTPTFSRFFIEKNQRGAI----PR 67

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            V  LK R                               +     ++P+  ++  ++   
Sbjct: 68  TVKHLKDR----------------------------AWFYPEFKNVNPISYVKIMAKIGS 99

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIY---RQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           W  Q  S+ +  D     K   IY     AW  G K+ YY+R+    +   S  +  +
Sbjct: 100 WTTQGVSMEMVFDLNKDIKAKDIYDTLITAWEEGCKSVYYIRTIQKNTNNISEKEECE 157


>gi|213691512|ref|YP_002322098.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213522973|gb|ACJ51720.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457589|dbj|BAJ68210.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 802

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q 
Sbjct: 15  TKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQV 71

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              +      A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA  +      
Sbjct: 72  EGEIKGRY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEAV 129

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 + +  D TLI  N+ +
Sbjct: 130 S-----RFINHDPTLIHENANK 146


>gi|308235049|ref|ZP_07665786.1| anaerobic ribonucleoside triphosphate reductase [Gardnerella
           vaginalis ATCC 14018]
          Length = 333

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLLQHN 87
           VQV KR+G V  FD   I  AI  AF  +  + G      ++DI  ++  +   R     
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQEEQMIRDITDHIEAEIQDRY---- 94

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                  IEDIQ  VE  L+++  +++ R Y  YR  R   RA  +            ++
Sbjct: 95  --NGPAKIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN-----RL 147

Query: 148 MMDDGTLISFNSKR 161
           +  D +L+  N+ +
Sbjct: 148 VNRDESLVRENANK 161


>gi|296454674|ref|YP_003661817.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184105|gb|ADH00987.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 802

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q 
Sbjct: 15  TKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQV 71

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              +      A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA     K+  
Sbjct: 72  EGEIKGRY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA-----KATD 124

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 + +  D TLI  N+ +
Sbjct: 125 VNEAVARFINHDPTLIHENANK 146


>gi|242280970|ref|YP_002993099.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123864|gb|ACS81560.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 686

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 41/200 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + S+   +IS AI KA  A   K    S R+   ++                
Sbjct: 4   QILKRDGCLESWSTERISEAIFKALKASGIKDPLLSKRLGRKVEEKLADV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +   E +QD V+  LM++  + +   Y++YRE+R ++R         A          
Sbjct: 54  -DVPEQEMVQDMVQLVLMENRLYSVAERYIIYREKRRELRRQDETYLDIA---------- 102

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
             GT+ S+               L     ++  +    + + GL    L  +    +R  
Sbjct: 103 --GTIESY---------------LDRSDWRVNENSNMGHSFQGL---MLHMSGAVQARYC 142

Query: 210 IEKEPNYAKVTARFLLEKLR 229
           +EK P   ++        + 
Sbjct: 143 LEKYPEEIRLAHEHGYFHIH 162


>gi|157962440|ref|YP_001502474.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           pealeana ATCC 700345]
 gi|157847440|gb|ABV87939.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           pealeana ATCC 700345]
          Length = 705

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  + +V + +     QTV  L +     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVS----QTVAELEE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V+I D+QD VE  LM+  H  + R Y+ YR +R   R   S    +
Sbjct: 55  --VNIHDLQDSVENLLMEGPHKSLARVYIEYRHDRDVKREVSSRLNKE 100


>gi|152991511|ref|YP_001357233.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
 gi|151423372|dbj|BAF70876.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
          Length = 707

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V SF P KI  AI  AF +V                   ++    +L      
Sbjct: 9   IIKRDGSVESFKPYKIEDAIKAAFDSVLVPYD--------------KKVYEAVLIRISFD 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +  +E+IQD +E  L ++G+  + + ++ YR      R        D      
Sbjct: 55  TVKAVEEIQDIIEYELHRAGYFDVMKSFITYRFLHKMQRERILGLTPDTTFVDT 108


>gi|237736598|ref|ZP_04567079.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420460|gb|EEO35507.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 729

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G +  FD  +I RA+  AF        S      ++++ +T Q        N  
Sbjct: 3   EVIKRDGAIVEFDRDRIVRAMTMAFK------QSSGTVNNELVEKITTQI------ENMD 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +H+EDIQD V   LM S    I   Y  YR  ++++R  + 
Sbjct: 51  NKRMHVEDIQDIVVKKLMASSEKDIAIAYQSYRAIKTEIRNKEK 94


>gi|23466296|ref|NP_696899.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227546652|ref|ZP_03976701.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621685|ref|ZP_04664716.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312134044|ref|YP_004001383.1| nrdd [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482888|ref|ZP_07941895.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|322689748|ref|YP_004209482.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691698|ref|YP_004221268.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|23327048|gb|AAN25535.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227212969|gb|EEI80848.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515560|gb|EEQ55427.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|291516291|emb|CBK69907.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311773352|gb|ADQ02840.1| NrdD [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915662|gb|EFV37077.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|320456554|dbj|BAJ67176.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461084|dbj|BAJ71704.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 802

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                K   V V KR+G V  FDP  I  A+  AF  +  +          +I+    Q 
Sbjct: 15  TKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE---DAMIRGFANQV 71

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              +           IEDIQ+ VE +L+ +  + + R Y  YR ++   RA     K+  
Sbjct: 72  EGEIKGRY--TGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA-----KATD 124

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 + +  D TLI  N+ +
Sbjct: 125 VNEAVARFINHDPTLIHENANK 146


>gi|257452311|ref|ZP_05617610.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|317058854|ref|ZP_07923339.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|313684530|gb|EFS21365.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
          Length = 734

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF        +     +++I  +  Q        N  
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAFK------QNSRTIPEELISKIAHQI------ENIE 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             I+ +E+IQD V   LM S    I   Y  YR  ++++R       +   +        
Sbjct: 52  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNES 111

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           L +   +    + + +R L   +      L  +  + +     K    
Sbjct: 112 LLVENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKGEIH 159


>gi|312262459|gb|ADQ52754.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage PX29]
          Length = 704

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G +  FD S I  AI  +  ++     +            TE  V +L+    
Sbjct: 1   MQVQKRDGRIVDFDQSFIETAISNSLQSIGITDPTFPHHA-------TEAVVRKLIGR-- 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              +V I +IQ  VE +LM+S +  + R Y+ YR +R   R   S   
Sbjct: 52  --SMVTIGEIQHVVEDTLMRSRYPAVARAYIEYRYDRDVARDLNSDMT 97


>gi|289449636|ref|YP_003474856.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184183|gb|ADC90608.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 736

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHN 87
           ++VIKR+G   +F+  KI +A++KA     G      + R+  +++ +  +   R  Q  
Sbjct: 17  LKVIKRDGRKVAFNDEKILQALIKAETETNGIPTDERLERLSQLVQIINCEIADRFHQD- 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                + I +IQ+ VE  L++    ++   Y+ YR +R   R
Sbjct: 76  -----IKIYEIQNIVEHFLLEEHEVELATAYIRYRSQRDIDR 112


>gi|167725382|ref|ZP_02408618.1| hypothetical protein BpseD_40561 [Burkholderia pseudomallei DM98]
          Length = 245

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +  F                ++SCF+  +  P  L         AL E  +
Sbjct: 70  ARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                  +G D++ +   GA     +  S GV   L   +       +   R+ A  A L
Sbjct: 130 ALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVL 189

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
              H D+  F   +        R   +  A    D FM+ V Q+  WTL  
Sbjct: 190 RCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH 240


>gi|289809953|ref|ZP_06540582.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 188

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 25/192 (13%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
               +     D   V+   +  +   F F  +LG    Y  Y L   +G R    + F  
Sbjct: 63  YDDAVLA-RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEHFED 119

Query: 323 R---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD 378
           R   VA+ LA  +   E  A +  + + S  F  +TPT  N G  +  +L SCFL  + D
Sbjct: 120 RVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 176

Query: 379 DLYGIFGALQEN 390
           ++  I  A+   
Sbjct: 177 NMESIGRAVNSA 188


>gi|6782386|emb|CAB70098.1| ribonucleotide reductase R1 subunit [Plasmodium yoelii]
          Length = 86

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y  YE +         + + A  LW  +L    ETG P++ +KD CN  S Q+++G + 
Sbjct: 1   LYTKYEEENLGK-----KTVLAQDLWFAILQSQIETGVPYMLYKDACNSESNQKNLGTIK 55

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            SNLC EI   +S +E AVCNL SI L+   
Sbjct: 56  CSNLCCEIIEYTSPDEVAVCNLASIALMQIC 86


>gi|257465898|ref|ZP_05630209.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917054|ref|ZP_07913294.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690929|gb|EFS27764.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 734

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF        +     +++I  +  Q        N  
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAFK------QNSRTIPEELISKIAHQI------ENLE 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             I+ +E+IQD V   LM S    I   Y  YR  ++++R       +   +        
Sbjct: 52  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNES 111

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           L +   +    + + +R L   +      L  +  + +     K    
Sbjct: 112 LLVENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKGEIH 159


>gi|183602101|ref|ZP_02963469.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683013|ref|YP_002469396.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191333|ref|YP_002968727.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196739|ref|YP_002970294.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218594|gb|EDT89237.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620663|gb|ACL28820.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249725|gb|ACS46665.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251293|gb|ACS48232.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794326|gb|ADG33861.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 808

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FDP  I  A+  AF  ++ +   +  R   +I ++  Q    + +     
Sbjct: 32  VEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEER---MILDIANQIEGEIRERY--N 86

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               IEDIQ+ VE +L++   +++ R Y  YR  +   RA  +            +++  
Sbjct: 87  GPAKIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRAKATDINEAVS-----RLVNR 141

Query: 151 DGTLISFNSKR 161
           D +L+  N+ +
Sbjct: 142 DESLVRENANK 152


>gi|289177458|gb|ADC84704.1| Anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 824

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FDP  I  A+  AF  ++ +   +  R   +I ++  Q    + +     
Sbjct: 48  VEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEER---MILDIANQIEGEIRERY--N 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               IEDIQ+ VE +L++   +++ R Y  YR  +   RA  +            +++  
Sbjct: 103 GPAKIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRAKATDINEAVS-----RLVNR 157

Query: 151 DGTLISFNSKR 161
           D +L+  N+ +
Sbjct: 158 DESLVRENANK 168


>gi|271498937|ref|YP_003331962.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
 gi|270342492|gb|ACZ75257.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
          Length = 712

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA  A     A     V              + Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKAASAAGVDDADYCATVA-----------AAVAQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMAGQYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|90578071|ref|ZP_01233882.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
 gi|90441157|gb|EAS66337.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
          Length = 708

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M A  ++     S    +               L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVMGAAQSINDMDMSEVDAMS---------VAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|89075721|ref|ZP_01162116.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
 gi|89048584|gb|EAR54158.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
          Length = 708

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M A  ++     S    +               L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVMGAAQSINDMDMSEVDAMS---------VAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|224373779|ref|YP_002608151.1| anaerobic ribonucleoside triphosphate reductase [Nautilia
           profundicola AmH]
 gi|223589780|gb|ACM93516.1| anaerobic ribonucleoside-triphosphate reductase [Nautilia
           profundicola AmH]
          Length = 703

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V ++ P KI  AI KAF A                          +++  + 
Sbjct: 3   KVIKRDGSVQNYFPYKIEDAIKKAFEATNVSYDPH--------------VFEEVIKQIQK 48

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +  +E IQD +E SL + G+  + + ++LYR      R 
Sbjct: 49  IEMPEVEYIQDLIEHSLYKHGYFDVMKNFMLYRHLHKLQRE 89


>gi|120599363|ref|YP_963937.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|146292640|ref|YP_001183064.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           putrefaciens CN-32]
 gi|120559456|gb|ABM25383.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|145564330|gb|ABP75265.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           putrefaciens CN-32]
 gi|319425944|gb|ADV54018.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           putrefaciens 200]
          Length = 705

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+M A  +V  +    +  V   +     Q V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVMAAANSVGIEDEDYAATVAACVS----QRVASLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICREA 93


>gi|157737486|ref|YP_001490169.1| anaerobic ribonucleoside triphosphate reductase [Arcobacter
           butzleri RM4018]
 gi|157699340|gb|ABV67500.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Arcobacter
           butzleri RM4018]
          Length = 704

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   SF+  KI  AI KAF +V  K                      +L   K  
Sbjct: 5   ILKRDGSKQSFESYKIEDAIKKAFKSVNIKYDIS--------------VFFNVLFELKCK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +V +EDIQD +E  L ++ +  + + +++YR      R        D       + + +
Sbjct: 51  RVVAVEDIQDIIEKELYKARYFDVMKSFMIYRHLHKIQREQILQINKDTTYINSTQTIEE 110


>gi|291461042|ref|ZP_06026597.2| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379291|gb|EFE86809.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 731

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+       +       +I+ +  Q           
Sbjct: 6   RVIKRDGSVVEFSKDRIINAISKTFI------QASREPNMKLIEKIATQVEEL------P 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
             ++ +E+IQD V   LM S    I   Y  YR  ++++R       +   +       K
Sbjct: 54  GKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKGIYKQIGELVDASNEK 113

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 114 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 169


>gi|223038337|ref|ZP_03608631.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
 gi|222880194|gb|EEF15281.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
          Length = 718

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    + P KI  AI KAF +   +                ++    ++ H   +
Sbjct: 21  ILKRDGTKQEYLPYKIQDAIKKAFESESKEYD--------------DKVFLDVMGHVFDS 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            ++ +EDIQD +E +L  +GH  + + ++LYR      R        D       + + +
Sbjct: 67  EVLSVEDIQDYIEKALFNAGHFDVMKSFMLYRHTHKLQREQILGLNEDTTYINSTQTISE 126


>gi|315637212|ref|ZP_07892432.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
 gi|315478484|gb|EFU69197.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
          Length = 704

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   SF+  KI  AI KAF +V  K                      +L   K  
Sbjct: 5   ILKRDGSKQSFESYKIEDAIKKAFKSVNIKYDIS--------------VFFNVLFELKCK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +V +EDIQD +E  L ++ +  + + +++YR      R        D       + + +
Sbjct: 51  RVVAVEDIQDIIEKELYKARYFDVMKSFMIYRHLHKIQREQILQINKDTTYINSTQTIEE 110


>gi|149276406|ref|ZP_01882550.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
 gi|149232926|gb|EDM38301.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
          Length = 706

 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   SF+  KI  AI KAF +V                +L  + ++ L++  K A
Sbjct: 7   VIKRNGSFQSFESYKIEDAIRKAFSSVNVPHQ----------HDLVVRVLSLLIRKEKWA 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E+IQD +E +L  +G  ++TR ++ YR  R   RA  +    D       + + +
Sbjct: 57  ----VEEIQDVIERTLFDAGLFEVTRSFMRYRHTRKMQRAHSNGLNDDTTYIDSTQAIEE 112


>gi|255028153|ref|ZP_05300104.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes LO28]
          Length = 180

 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|167899957|ref|ZP_02487358.1| hypothetical protein Bpse7_39910 [Burkholderia pseudomallei 7894]
          Length = 242

 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +  F                ++SCF+  +  P  L         AL E  +
Sbjct: 70  ARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                  +G D++ +   GA     +  S GV   L   +       +   R+ A  A L
Sbjct: 130 ALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVL 189

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
              H D+  F   +        R   +  A    D FM+ V Q+  WTL  
Sbjct: 190 RCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH 240


>gi|213028162|ref|ZP_03342609.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 113

 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G    F   +I  AI++A  A     A     V +++                +
Sbjct: 4   HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS-----------SQMNA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 53  RSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|304570577|ref|YP_386773.2| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 683

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++ P +I+ AI+KA  A   K    S R+   ++   E            
Sbjct: 4   QIQKRDGCLETWSPDRIALAILKALKASGIKDPLLSRRLARKVEQRLEGI---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
             +   E +QD +E  LM+S  + + R +++YRE R  +R  Q+     +    
Sbjct: 54  -DVPCQEQVQDTIEMILMESRLYHVARRFIIYRENRRQLREQQAAYLDISETID 106


>gi|254993187|ref|ZP_05275377.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-064]
          Length = 165

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|300718561|ref|YP_003743364.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
 gi|299064397|emb|CAX61517.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
          Length = 709

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD ++I  AI  A  A   +            +    +   ++ Q  +
Sbjct: 1   MRVIKRDGCSMPFDATRIGDAIKGAAHAAGIED-----------QGYCAEVTVQICQQLQ 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + I DIQ  VE  LM   + ++ R Y+ YR +R   R  +    +
Sbjct: 50  QQDCLDIHDIQRAVENQLMAGRYPELARTYIEYRHDRDIARELRGKLNT 98


>gi|255522361|ref|ZP_05389598.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J1-175]
          Length = 148

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|291541491|emb|CBL14601.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus
           bromii L2-63]
          Length = 723

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    F+  KI  A+ KA                + I+++ +    +    NK
Sbjct: 1   MRIIKRNGSEEDFNIEKIINAVKKA-----NGSGEHKFLTDEQIEDVADYVEYKC---NK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  IRRAVSVEEIQDMVEDQLMAKGAFELA 79


>gi|157164943|ref|YP_001467813.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           concisus 13826]
 gi|112801754|gb|EAT99098.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           concisus 13826]
          Length = 700

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G    F   KI  AI KAF +                + +    V  + Q    
Sbjct: 3   EILKRDGTRQEFVAYKIVDAIKKAFASENKAYD----------EQVFTNVVQDIFQK--- 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           +  + +EDIQD +E  L   GH ++ + ++LYR      R        D       + + 
Sbjct: 50  SSAITVEDIQDAIEKELFDGGHFEVLKSFMLYRHTHKLQREQILGLNEDTTYINSTQTIN 109

Query: 150 D 150
           +
Sbjct: 110 E 110


>gi|257458936|ref|ZP_05624056.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
 gi|257443640|gb|EEV18763.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
          Length = 702

 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G    F   KI  AI KA+ +V  +                E+    ++     
Sbjct: 3   KIIKRDGSFQEFQSYKIKDAIKKAYKSVGSEFD--------------EKVFDNVMSAIVF 48

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              + +EDIQD +E  L ++G   + + +++YR      R      + D 
Sbjct: 49  KDKLSVEDIQDLIEKKLFEAGDFAVLKSFMIYRHTHKMQREHILGLEEDT 98


>gi|294141701|ref|YP_003557679.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
 gi|293328170|dbj|BAJ02901.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
          Length = 705

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +      + ++ V D +                  
Sbjct: 4   VIKRDGCRTPFDETRIRDAVVAAANSAGIDDKNYAMSVADSVAKCVADKTE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 55  --IDIHDLQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQE 100


>gi|330448570|ref|ZP_08312218.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492761|dbj|GAA06715.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   ++ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAKSINDMEMSEVYAMSVAEAALAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVEIHAIQDAVENQLMVGPHQAVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|160874804|ref|YP_001554120.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS195]
 gi|160860326|gb|ABX48860.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS195]
 gi|315267042|gb|ADT93895.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS678]
          Length = 705

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +  V   I     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACIS----QSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREA 93


>gi|217973855|ref|YP_002358606.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS223]
 gi|217498990|gb|ACK47183.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS223]
          Length = 705

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +  V   I     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACIS----QSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREA 93


>gi|304409768|ref|ZP_07391388.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|307304124|ref|ZP_07583877.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
 gi|304352286|gb|EFM16684.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|306913022|gb|EFN43445.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
          Length = 705

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +  V   I     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACIS----QSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREA 93


>gi|153000177|ref|YP_001365858.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS185]
 gi|151364795|gb|ABS07795.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS185]
          Length = 705

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +  V   I     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACIS----QSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREA 93


>gi|126173897|ref|YP_001050046.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS155]
 gi|125997102|gb|ABN61177.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           baltica OS155]
          Length = 705

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +  V   I     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACIS----QSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREA 93


>gi|218886568|ref|YP_002435889.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757522|gb|ACL08421.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 704

 Score = 87.9 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G V ++   ++  AI KA  A   K      R+   ++   +            
Sbjct: 4   HIRKRDGRVETWSVDRVGHAINKALKASGIKDPLLGKRLAQRVEAKLDGV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +   E +QD V+  LM++  + +   Y++YRE+R ++R+        A +   
Sbjct: 54  -DMPEQEQVQDLVQRVLMEARLYAVAERYIIYREKRREMRSQNEAYLDVARMIES 107


>gi|237740150|ref|ZP_04570631.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
 gi|229422167|gb|EEO37214.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
          Length = 728

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+       +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFSKDRIINAISKTFI------QASREPNMKLIEKIATQVEEL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
           + ++ +E+IQD V   LM S    I   Y  YR  ++++R       +  S+       K
Sbjct: 51  SKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKGIYRQISELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|56807757|ref|ZP_00365617.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 206

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 5/172 (2%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEF-ITELDSIIKSE- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           +F F  ++     Y +Y L  N     + +    RV          +E  A +    + +
Sbjct: 90  NFRFKSFMAAYKFYQQYALKTNDGEHYL-ENLEDRVLFNALYFADGQEDLAKDLAVEMIN 148

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
             +  +TP+  N+G  R  +L SCFL  V DD+  I  ++     L++  G 
Sbjct: 149 QRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGR 200


>gi|260497987|ref|ZP_05816102.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
 gi|260196452|gb|EEW93984.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
          Length = 728

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNK 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  + +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHI---KLAHIKGEIHLHDLDYLL 166


>gi|256028545|ref|ZP_05442379.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289766464|ref|ZP_06525842.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289718019|gb|EFD82031.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
          Length = 728

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNK 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  K +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPKHI---KLAHIKGEIHLHDLDYLL 166


>gi|237744003|ref|ZP_04574484.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
 gi|229431232|gb|EEO41444.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
          Length = 728

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI K F  A          ++   +++L ++ +        
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTFEQASREPNMKLIEKIASQVEDLPDKVLA------- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAP 143
                 +E IQD V   LM S    I   Y  YR  ++++R       +   +       
Sbjct: 56  ------VEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNK 109

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL     +    + + +R L   +      L  +  K +      ++   +   DL+  L
Sbjct: 110 KLLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPKHI---KLAHIKGEIHLHDLDYLL 166


>gi|323491825|ref|ZP_08097000.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
 gi|323313960|gb|EGA67049.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
          Length = 706

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A   V+ + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVESAAEHVDQEIAVYALNVALAVEL-----------QLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARSYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|146283826|ref|YP_001173979.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri A1501]
 gi|145572031|gb|ABP81137.1| anaerobic class III ribonucleotide reductase [Pseudomonas stutzeri
           A1501]
 gi|327482155|gb|AEA85465.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri DSM 4166]
          Length = 672

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 11/122 (9%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
            E  + V + KR+G + +F+ +KI RAI  A  A     A+ +  + + ++    +    
Sbjct: 5   AEVNQPVSLRKRDGRLAAFELAKIERAIAAAGAATGEFDAAVAQALAEAVRLQLARRTA- 63

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
                     V +E +QD VE +LM +GH    R Y++YRE  + +R  +      A   
Sbjct: 64  ----------VEVEQVQDAVERALMAAGHFDTARAYIVYRERHARLRRDRKAVVDVAASM 113

Query: 143 PK 144
            +
Sbjct: 114 NE 115


>gi|227486785|ref|ZP_03917101.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235255|gb|EEI85270.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 706

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    F+  KI+ AI KA  +  G            ++    +  + + + +K
Sbjct: 2   LQVIKRDGTKVDFNKDKITIAIEKAMHSPSGIY----------VEGQAAEIASEIEERSK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + I +I+D V   L+   +    + Y  Y+  ++  R   +       +  +  I 
Sbjct: 52  NKREISIYEIEDLVYYKLIDRKNPATAKSYESYKSVQAYKREQNTSDDEIIGLLNQTNID 111

Query: 149 MDD 151
           + D
Sbjct: 112 VMD 114


>gi|113970776|ref|YP_734569.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-4]
 gi|113885460|gb|ABI39512.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella sp.
           MR-4]
          Length = 705

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++                 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDA 93


>gi|291333308|gb|ADD93015.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S04-C246]
          Length = 440

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW------------D 717
           + IPY       I       +   + + S E+A   G Y  ++ +               
Sbjct: 1   MGIPYDDERGYAICGAMTAIMCGESYATSAEMASILGPYPDYERNKEHMLKVMRNHRRAA 60

Query: 718 QGVFPIDSIGLLAEV------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            G    +  GL  +       +    +   +R  WD   +  +  G RN+    IAPT T
Sbjct: 61  YGTNDDEYEGLTVKPMSIDSKKCPKDLLEAARNAWDVALREGEEHGYRNAQTTVIAPTGT 120

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I  + G  +  ++P +  +  K+   G     VNS + N LK+    D+      +Y  G
Sbjct: 121 IGLVMGADTTGVEPQFSLVQYKTLAGGGSLRIVNSGVSNALKRLGYSDKETTEIEQYITG 180

Query: 830 --SIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             ++ N   +  +  K+     +I+ +  +E
Sbjct: 181 TKTLSNCPHLSAE--KLTKMGLDINTIKKLE 209



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA- 848
           K  +       ++   + L    L  + + +   Y  G   I     + ++   +   A 
Sbjct: 233 KDTLGMSQEDYDNPFFDVLSHMGLSSDEIDTANDYVFGYNMIEGAPGLKEEHLAVFDCAT 292

Query: 849 -------FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIYRQAWLMGLKTT 900
                    ID    +   +  Q +I  A S  + +   S  +++   Y  + L   K  
Sbjct: 293 PCGKYGKRSIDWKAHVMMMAAAQPFISGAISKTINMPSNSTVEEIRDAYNLSHLTMNKAC 352

Query: 901 YYLRSRSATSV 911
              R  S  S 
Sbjct: 353 AVYRDCSKLSQ 363


>gi|114048003|ref|YP_738553.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-7]
 gi|113889445|gb|ABI43496.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           MR-7]
          Length = 705

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++                 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDA 93


>gi|255321696|ref|ZP_05362851.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
 gi|255301176|gb|EET80438.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
          Length = 701

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    + P KI  AI KAF +   +                ++    ++ H   +
Sbjct: 4   ILKRDGTKQEYLPYKIQDAIKKAFESESKEYD--------------DKVFLDVMGHVFDS 49

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            ++ +ED+QD +E +L  +GH  + + ++LYR      R        D       + + +
Sbjct: 50  EVLSVEDVQDYIEKALFNAGHFDVMKSFMLYRHTHKLQREQILGLNEDTTYINSTQTISE 109


>gi|117921044|ref|YP_870236.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           ANA-3]
 gi|117613376|gb|ABK48830.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           ANA-3]
          Length = 705

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  +  V   ++                 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDA 93


>gi|163751120|ref|ZP_02158350.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
 gi|161329076|gb|EDQ00148.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
          Length = 705

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +   +  S ++ V   +     +            
Sbjct: 4   VIKRDGYRTPFDETRIRDAVVAAANSAGIEDKSYAVSVAASVAKCVAEHAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + I ++QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 55  --IDIHELQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQE 100


>gi|325847808|ref|ZP_08170030.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480826|gb|EGC83879.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 706

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KRNG    FD  KI  AI KA  +  G            I+N  E+    + +  ++
Sbjct: 3   KVVKRNGQKVDFDKEKIKIAIEKAMNSPNGVF----------IENQAEEIANEIEKSVEN 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + I  I+D+V   L+   +    + Y  YR  ++  RAA +       +  +  I +
Sbjct: 53  KREISIYQIEDRVYYKLIDKKNPATAKSYEAYRSVQAYKRAANTTDDDIIGLLERTNIDV 112

Query: 150 DD 151
            D
Sbjct: 113 MD 114


>gi|317472119|ref|ZP_07931451.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900523|gb|EFV22505.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
          Length = 81

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLK 898
           +    +  A  ID  W +++   RQ+ IDQAQS+NLY  +E + +K+  +Y  AW  G+K
Sbjct: 2   ETFWYYKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEQGVK 61

Query: 899 TTYYLRSRS 907
           T YY RS+S
Sbjct: 62  TIYYTRSKS 70


>gi|148982125|ref|ZP_01816601.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
 gi|145960658|gb|EDK26004.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
          Length = 496

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++   E             
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVELKLE-----------DY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|62996798|gb|AAY24449.1| ribonucleoside-diphosphate reductase large chain precursor [Wiseana
           iridescent virus]
          Length = 330

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 34/209 (16%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRV----- 493
             R+G+  AYL+  H ++  FL+ R+ +G   D   +  +++ A  IPD FM+++     
Sbjct: 1   QTRRGSYAAYLDITHPEIISFLNTRRVSGVGGDYNFKLMNIHNAVNIPDEFMRKIWFIST 60

Query: 494 --------------------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                                 +  W  FS  ++ D      ++F    + +    D   
Sbjct: 61  VTPLLRENKYLKIEETIKEIKNSNKWVEFSELKIEDFTPQNSQKFIKEMDKW-NLFDPHT 119

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR--SPQQHVG-VVHSSNLC--TEI 588
            KV   ISA  LW ++L    ETG P++ F D  N    S Q+ +G  V  SNLC   E 
Sbjct: 120 KKVKETISATELWERILITRAETGEPYLHFIDASNRNLPSFQKKLGLRVKQSNLCVVGET 179

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFD 617
            + + + E  + +L    +     +   D
Sbjct: 180 LILTENGEYPIKSLVDREVSVWNGDEWSD 208


>gi|223934158|ref|ZP_03626100.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           89/1591]
 gi|330833719|ref|YP_004402544.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           ST3]
 gi|223897180|gb|EEF63599.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           89/1591]
 gi|329307942|gb|AEB82358.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           ST3]
          Length = 723

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  +  
Sbjct: 15  VLKRDGRTVSFDQDKIFSALRRANQELEHPVSEAGLKI------VLEAVLAEIGRRFEKD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 69  --VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|258624529|ref|ZP_05719471.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
 gi|258583182|gb|EEW07989.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
          Length = 706

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVEL-----------KLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103


>gi|254285124|ref|ZP_04960090.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
 gi|150425127|gb|EDN16904.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
          Length = 706

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|262173685|ref|ZP_06041362.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
 gi|261891043|gb|EEY37030.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
          Length = 706

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVEL-----------KLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103


>gi|229523013|ref|ZP_04412425.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
 gi|229339863|gb|EEO04873.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
          Length = 706

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|258623425|ref|ZP_05718428.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262164241|ref|ZP_06031979.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
 gi|258584240|gb|EEW08986.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262026621|gb|EEY45288.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
          Length = 706

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVEL-----------KLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103


>gi|294782760|ref|ZP_06748086.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481401|gb|EFG29176.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
          Length = 728

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F+       +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVIEFDKKRIINAISKTFI------QASREPNMKLIEKIATQVEEL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA-----QSHSKSDAPIAPK 144
           + ++ +E+IQD V   LM S    I   Y  YR  ++++R       +  S+       K
Sbjct: 51  SKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKGIYKQISELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  K +      ++   +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPKHI---KLAHIKGEIHLHDLDYLL 166


>gi|302024619|ref|ZP_07249830.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           05HAS68]
          Length = 723

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  +  
Sbjct: 15  VLKRDGRTVSFDQDKIFSALRRANQELEHPVSEAGLKI------VLEAVLAEIGRRFEKD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 69  --VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|294510243|ref|YP_002395294.2| anaerobic ribonucleoside-triphosphate reductase (N-terminal part)
           [Vibrio splendidus LGP32]
 gi|223587979|emb|CAV26396.2| anaerobic ribonucleoside-triphosphate reductase [Vibrio splendidus
           LGP32]
          Length = 707

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 6   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVEL-----------KLEDY 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 55  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 114

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 115 INENANKDGKVIPTQRDLLAGIVAK 139


>gi|15601271|ref|NP_232902.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae O1
           biovar eltor str. N16961]
 gi|121586449|ref|ZP_01676236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121726189|ref|ZP_01679487.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|153819569|ref|ZP_01972236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227812081|ref|YP_002812091.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229506317|ref|ZP_04395826.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229509563|ref|ZP_04399045.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229516616|ref|ZP_04406063.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229605868|ref|YP_002876572.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           MJ-1236]
 gi|254849674|ref|ZP_05239024.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262151236|ref|ZP_06028373.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
 gi|9657915|gb|AAF96414.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549274|gb|EAX59305.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121631408|gb|EAX63780.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|126509879|gb|EAZ72473.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227011223|gb|ACP07434.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229346497|gb|EEO11468.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229353513|gb|EEO18451.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229356668|gb|EEO21586.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229372354|gb|ACQ62776.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae MJ-1236]
 gi|254845379|gb|EET23793.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262031003|gb|EEY49630.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|229526819|ref|ZP_04416223.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229527641|ref|ZP_04417032.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229334003|gb|EEN99488.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229336977|gb|EEO01995.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|153212457|ref|ZP_01948226.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
 gi|124116494|gb|EAY35314.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|254226501|ref|ZP_04920085.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
 gi|125620958|gb|EAZ49308.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|229513317|ref|ZP_04402782.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
 gi|229349727|gb|EEO14682.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|86148016|ref|ZP_01066319.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
 gi|85834240|gb|EAQ52395.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVEL-----------KLEDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|157374739|ref|YP_001473339.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           sediminis HAW-EB3]
 gi|157317113|gb|ABV36211.1| Ribonucleoside-triphosphate reductase [Shewanella sediminis
           HAW-EB3]
          Length = 705

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +        +     ++ N   ++V  + +     
Sbjct: 4   VIKRDGYRTPFDETRIRDAVSAAANSAGIDDNDYAT----LVANNVAESVADMPE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 55  --VDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQE 100


>gi|147671741|ref|YP_001215286.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           O395]
 gi|262169066|ref|ZP_06036759.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
 gi|146314124|gb|ABQ18664.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|227015436|gb|ACP11645.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|262022347|gb|EEY41055.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|304373799|ref|YP_003858544.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB16]
 gi|299829755|gb|ADJ55548.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB16]
          Length = 709

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G    FD  KI  A+ KA           ++   D    L +          +
Sbjct: 1   MKVEKRDGKTVDFDKEKIRIAVEKA---------GGTMTDADAAIMLVQ------YNQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + I  IQ+ VE SLM++    + R Y+ YR +R   R  +S    D
Sbjct: 46  DGSAMKIARIQELVEESLMKTN-PAVARAYIEYRHDRDIAREQKSKLFKD 94


>gi|262403554|ref|ZP_06080112.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
 gi|262350058|gb|EEY99193.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|260770526|ref|ZP_05879459.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|260615864|gb|EEX41050.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|315181612|gb|ADT88525.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio furnissii
           NCTC 11218]
          Length = 706

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A   V  + A  ++ V   ++              K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEEVNSEIAIYALNVALAVEL-----------KLKEY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVRIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103


>gi|253752756|ref|YP_003025897.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           SC84]
 gi|253754581|ref|YP_003027722.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           P1/7]
 gi|253756514|ref|YP_003029654.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           BM407]
 gi|251817045|emb|CAZ52697.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           SC84]
 gi|251818978|emb|CAZ56825.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           BM407]
 gi|251820827|emb|CAR47593.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           P1/7]
 gi|319759174|gb|ADV71116.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           JS14]
          Length = 723

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  +  
Sbjct: 15  VLKRDGRTVSFDQDKIFSALQRANQELEHPVSEAGLKI------VLEAVLAEIGRRFEKD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 69  --VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|153830794|ref|ZP_01983461.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
 gi|148873724|gb|EDL71859.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
          Length = 579

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|146319772|ref|YP_001199484.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           05ZYH33]
 gi|146321971|ref|YP_001201682.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           98HAH33]
 gi|145690578|gb|ABP91084.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|145692777|gb|ABP93282.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|292559379|gb|ADE32380.1| putative Ribonucleoside-triphosphate reductase [Streptococcus suis
           GZ1]
          Length = 728

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  +  
Sbjct: 20  VLKRDGRTVSFDQDKIFSALQRANQELEHPVSEAGLKI------VLEAVLAEIGRRFEKD 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 74  --VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 121


>gi|261210268|ref|ZP_05924564.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
 gi|260840612|gb|EEX67168.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
          Length = 706

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    +   A  ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQDIAIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTREIE 103


>gi|169351479|ref|ZP_02868417.1| hypothetical protein CLOSPI_02259 [Clostridium spiroforme DSM 1552]
 gi|169291701|gb|EDS73834.1| hypothetical protein CLOSPI_02259 [Clostridium spiroforme DSM 1552]
          Length = 719

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI  AI+KA     G G   +    DI   + +        H  
Sbjct: 1   MKVIKRDGQKVDFDASKIENAILKAMK--CGSGIVDTKCAHDIAVEIEK-------WHEF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + I  I+ QV   L++ G     + Y  YR+ R   R   +    
Sbjct: 52  DGNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRETNTIDNE 100


>gi|209809560|ref|YP_002265099.1| anaerobic ribonucleoside triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
 gi|208011123|emb|CAQ81545.1| anaerobic ribonucleoside-triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
          Length = 706

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   +++ S+I  A+  A           S +V   I++  +     +    
Sbjct: 2   NITVIKRDGSRAAYENSRIIDAVKGA-----------SEQVTPEIESYAQLVAHAVEVAL 50

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +    V I  IQD VE  LMQ  H  + R Y+ YR +R   R   S    +
Sbjct: 51  QGQKEVGIRQIQDLVENELMQGPHKVLARAYIEYRHDRDIAREKISVLNKE 101


>gi|24374363|ref|NP_718406.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           oneidensis MR-1]
 gi|24348920|gb|AAN55850.1|AE015721_13 anaerobic ribonucleoside-triphosphate reductase [Shewanella
           oneidensis MR-1]
          Length = 705

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  +    +  V   +                  
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDTDYAATVAACVSARVANMAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A
Sbjct: 55  --VEIHHLQDVVENLLMEGPYKSLARVYIEYRHDRDICRDA 93


>gi|153825874|ref|ZP_01978541.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
 gi|149740474|gb|EDM54597.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
          Length = 706

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + +    ++ V   ++              +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIVIYALNVALAVEL-----------KLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|313669387|ref|YP_004049814.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156584|gb|ADR35261.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 704

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    + P KI  AI KA+ +V+               ++ E  +T +L     
Sbjct: 6   RVIKRDGSSELYHPFKIEDAIRKAYESVQ--------------VSVNEDVITEILFQVMY 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             +  +E IQD +E  L +SG   + + ++ YR      R        D 
Sbjct: 52  HSVFEVEKIQDLIEEELYKSGAFSVMKSFITYRFLHKMQREHILGFGEDT 101


>gi|242240979|ref|YP_002989160.1| anaerobic ribonucleoside triphosphate reductase [Dickeya dadantii
           Ech703]
 gi|242133036|gb|ACS87338.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech703]
          Length = 712

 Score = 85.2 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A++K            +        +        + Q  +  
Sbjct: 5   VIKRDGCQVPFDENRIKDAVLK-----------AAQAADVDDADYCATVACAVAQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMSGRYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|114563613|ref|YP_751126.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           frigidimarina NCIMB 400]
 gi|114334906|gb|ABI72288.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 705

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G  T+FD  +I  A++ A  +        + ++   ++           Q     
Sbjct: 4   VVKRDGCRTAFDGCRIKEAVVAAMESAGIADHQYAQQLAQTVE-----------QQMTVK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I ++QD VE  LM      + R Y+ YR +R   R  QS    
Sbjct: 53  TEVDIHELQDAVENLLMSGPFKSVARHYIEYRHDRDKHRETQSKLNC 99


>gi|167624610|ref|YP_001674904.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354632|gb|ABZ77245.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
          Length = 705

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +   + A  + ++ + ++    Q            
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V+I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 55  --VNIHDLQDTVENLLMEGPYKSLARVYIEYRHDRDTNREVSSRLNKE 100


>gi|153801436|ref|ZP_01956022.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
 gi|124123011|gb|EAY41754.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
          Length = 706

 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A    + + A  ++ V   ++                 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVEL-----------KLCDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103


>gi|291166947|gb|EFE28993.1| anaerobic ribonucleoside-triphosphate reductase [Filifactor alocis
           ATCC 35896]
          Length = 717

 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+QVIKR+G    FD  KI  AI KA  +  G               L E+  T + +  
Sbjct: 2   GLQVIKRDGSKVPFDKEKIVVAIKKAMDSSTGIYE----------DGLAERIATEIEEFA 51

Query: 88  KS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           +S    + I  I+DQV   L+Q  +    R Y  Y+  ++  R   +  +    I  +  
Sbjct: 52  RSLKRDLTIYGIEDQVYYKLIQYENPATARAYENYKAVQAFKRKVNTIDEDVVGILNRSN 111

Query: 147 IMMDD 151
           I + D
Sbjct: 112 INVLD 116


>gi|213621398|ref|ZP_03374181.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 103

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + ++   ++  A++I P  +I++ +   + +DQ  SL L+  D  + + ++     AW
Sbjct: 14  PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAW 73

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGV 919
             G+K+ YY+R R    +E + ++G 
Sbjct: 74  RKGIKSLYYIRLRQLA-LESTEIEGC 98


>gi|170118628|ref|XP_001890489.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
 gi|164634518|gb|EDQ98854.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
          Length = 156

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 32/163 (19%)

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           T   V+QG  +R G    Y+E WH D+ EFLDLRKN G +           W+       
Sbjct: 19  TGCYVDQGGNQRSGTFTIYIEPWHADIFEFLDLRKNHGMEE-------VCEWVG------ 65

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV----ALWRK 548
              N  W LF P++   L  +                 R   +  + + A      +W  
Sbjct: 66  --PNRDWPLFCPNKAPGLGKVNSA------------VSRLFTRRRKVVPASPFLPRIWYA 111

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           +L    +TG P++ ++D  N +S Q+++G + SS+LC EIT  
Sbjct: 112 ILEAQIKTGGPFMVYRDHTNTKSNQKNLGTIKSSDLCMEITKY 154


>gi|294786353|ref|ZP_06751607.1| anaerobic ribonucleoside-triphosphate reductase [Parascardovia
           denticolens F0305]
 gi|315225896|ref|ZP_07867684.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Parascardovia denticolens DSM 10105]
 gi|294485186|gb|EFG32820.1| anaerobic ribonucleoside-triphosphate reductase [Parascardovia
           denticolens F0305]
 gi|315120028|gb|EFT83160.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Parascardovia denticolens DSM 10105]
          Length = 797

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FD   I  AI  +F    G         + +I+ + ++  + +     
Sbjct: 19  IKVEKRDGRIVPFDRVNIIHAIEGSFK---GSHVEVGPEEERLIEQMAQRVESAVTGRY- 74

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I+DIQ  VE  L+    + I + Y  YR ++   RA  S            K++
Sbjct: 75  -NGPVRIDDIQSLVEHELVNEHLYDIAKAYTSYRLDKDIKRAKASDVNEAIK-----KLI 128

Query: 149 MDDGTLISFNSKR 161
             D +L+  N+ +
Sbjct: 129 NKDESLVRENANK 141


>gi|195546290|ref|YP_002117548.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
 gi|195537749|dbj|BAG67046.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
          Length = 807

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRN  +  F    I+ A+ KAF  V         ++  I+    + T+ +LL+ NK  
Sbjct: 67  VIKRNKSIAKFHRENITNAVTKAFEDVYSNIEDHITKIDQIV----DLTINKLLRQNK-- 120

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +   I +IQ  VE SL+     K+   Y  YR +    R  Q+
Sbjct: 121 MQFDITEIQSAVEQSLVDVEEFKVAEAYTAYRLQHDIDRKKQT 163


>gi|167754898|ref|ZP_02427025.1| hypothetical protein CLORAM_00402 [Clostridium ramosum DSM 1402]
 gi|167704948|gb|EDS19527.1| hypothetical protein CLORAM_00402 [Clostridium ramosum DSM 1402]
          Length = 719

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI +AI+KA     G G   S    DI   +          H  
Sbjct: 1   MKVIKRDGQSVEFDASKIEKAILKAMQ--CGSGIVDSKCAHDIAVEIEN-------WHQF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           S   + I  I+ QV   L++ G     + Y  YR+ R   R   +  K 
Sbjct: 52  SDNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRETNTIDKE 100


>gi|237735373|ref|ZP_04565854.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229381118|gb|EEO31209.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 719

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI +AI+KA     G G   S    DI   +          H  
Sbjct: 1   MKVIKRDGQSVEFDASKIEKAILKAMQ--CGSGIVDSKCAHDIAVEIEN-------WHQF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           S   + I  I+ QV   L++ G     + Y  YR+ R   R   +  K 
Sbjct: 52  SDNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRETNTIDKE 100


>gi|84393950|ref|ZP_00992691.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
 gi|84375449|gb|EAP92355.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
          Length = 706

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S +    I          +    +  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-----------SDKADKEIAIYALNVALAVELKLEDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHISEIQTLVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|126654392|ref|ZP_01726138.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126589160|gb|EAZ83341.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 199

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 33/193 (17%)

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + GV+  ++P +   Y +S   G F  V + +V E   R                   + 
Sbjct: 1   MVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDR-------------------HP 41

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
           E    +L +   TA E+ P    +     QKWID + S  +   +  + ++++ +Y + +
Sbjct: 42  EASEQELPEWFVTAMELKPEAHADVQCIIQKWIDSSISKTVNAPKGYTVQQVEKVYERLY 101

Query: 894 LMGLK--TTYYLRSRSATSVEKSTLKGV------DGKLNAVPVTDPNSSTHSLGIPSSCT 945
             G K  T Y   SR +  +     +        + +L     T P     ++    S T
Sbjct: 102 KGGAKGGTVYVDGSRDSQVLTLKAEENDMDQLSFEEELVEEHTTRPVVLVDTIQALESTT 161

Query: 946 -----SDTECEVC 953
                    C VC
Sbjct: 162 VIGSDVGNTCPVC 174


>gi|167947198|ref|ZP_02534272.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 72

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 12/81 (14%)

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--S 934
           + EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT+VEK+T         A    D N    
Sbjct: 1   MAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATAVEKTT---------ASSSGDVNRLGD 51

Query: 935 THSLGIPSSCTS-DTECEVCQ 954
                 P +C+  D +CE CQ
Sbjct: 52  GAPAEAPKACSILDPDCEACQ 72


>gi|15894492|ref|NP_347841.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15024132|gb|AAK79181.1|AE007634_11 Anaerobic ribonucleotide reductase [Clostridium acetobutylicum ATCC
           824]
 gi|325508623|gb|ADZ20259.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 699

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  +I  AI KA  ++E         + DI+  + E  + ++      
Sbjct: 4   KVIKRDGREKDFDILRIEHAIKKAEKSIEVNECWDDDALCDILMKIDETNLKKIE----- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                IE +QD V   L +     + + Y  YR+ER+ +R  +S+
Sbjct: 59  -----IEKVQDIVIDVLNKYN-KNVAKAYSDYRKERTKIRQDKSN 97


>gi|304437818|ref|ZP_07397767.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369175|gb|EFM22851.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 761

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +    V KR G    +D SKI  AI  A              V  +     +     + 
Sbjct: 7   SMTVTTVTKRAGNAVPYDRSKILNAITSASKE----------YVHPMTALEIDTVTKSVE 56

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           +       + +E+IQD VE  L+  GH+ I R Y+ Y
Sbjct: 57  EAFGDRTEISVEEIQDLVEKQLLAHGHYDIARRYITY 93


>gi|238926706|ref|ZP_04658466.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
 gi|238885463|gb|EEQ49101.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
          Length = 761

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +    V KR G    +D SKI  AI  A              V  +     +     + 
Sbjct: 7   SMTVTTVTKRAGNAVPYDRSKILNAITSASKE----------YVHPMTALEIDTVTKSVE 56

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           +       + +E+IQD VE  L+  GH+ I R Y+ Y
Sbjct: 57  EAFGDRTEISVEEIQDLVEKQLLAHGHYDIARRYITY 93


>gi|66391712|ref|YP_239237.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB43]
 gi|62288800|gb|AAX78783.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB43]
          Length = 707

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  A+ KA           ++   D    L +          +
Sbjct: 1   MLVEKRDGKTVDFDKEKIRIAVEKA---------GGTMTDADAAIMLVQ------YNQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + I  IQ+ VE SLM++    + R Y+ YR +R   R  +S    D
Sbjct: 46  DGSAMKIARIQELVEESLMKTN-PAVARAYIEYRHDRDIAREQKSKLFKD 94


>gi|210621330|ref|ZP_03292592.1| hypothetical protein CLOHIR_00535 [Clostridium hiranonis DSM 13275]
 gi|210154813|gb|EEA85819.1| hypothetical protein CLOHIR_00535 [Clostridium hiranonis DSM 13275]
          Length = 706

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI  AI+KA            I + +I  N++            
Sbjct: 1   MKVIKRDGSTVPFDRTKIEVAILKAMK------NGSGIYIPEIASNISIDAEKHFENFKP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 I  I+  V   L+  G  +  R Y  YR  +S  R   +  +
Sbjct: 55  ---TPTIHQIEVYVYERLIHYGQKETARAYEGYRAVQSFKRHVNTTDE 99


>gi|294055877|ref|YP_003549535.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615210|gb|ADE55365.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A  S  +  P  +    VIKR+G  + +   +I++A+ KA  +++ +  + + +V     
Sbjct: 7   AIQSTLFDTPNSLPYPLVIKRDGTHSPYSAERIAQAVYKAGQSMQIEDFAYAGQV----- 61

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             T     +L+        + + +IQ  VE  LM   H ++ R Y+ +R +R+  R  
Sbjct: 62  --TAAVTAKLI----GTQEICVTEIQKLVEDELMSGPHKELARAYIEFRHDRNVARER 113


>gi|254459239|ref|ZP_05072661.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
 gi|207084132|gb|EDZ61422.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
          Length = 702

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G    F   KI  AI KAF +      S                   +L   K+
Sbjct: 4   NILKRDGTHKEFLSFKIEDAIKKAFKSENITYDSS--------------IFFNVLDRLKN 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             +V +EDIQD +E  L +  +  + R ++LYR      R +
Sbjct: 50  KRVVAVEDIQDAIEKELYKGRYFDVMRSFILYRHMHKMQRDS 91


>gi|260773807|ref|ZP_05882722.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
 gi|260610768|gb|EEX35972.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
          Length = 706

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF   +I  A+  A   V  + A  ++ V   ++   E             
Sbjct: 5   VIKRDGSKASFSRDRIQAAVESAADQVTSEIAIYALNVALAVELQLE-----------GQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  QQVHIAEIQTLVENELMQGPYKGLARSYIEYRHDRDIAREKQSTLTKEIE 103


>gi|223986900|ref|ZP_03636877.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
 gi|223961156|gb|EEF65691.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
          Length = 811

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    F   KI   I K F  V    +      ++ ++ +  + + ++   N 
Sbjct: 57  IEVIKRDGRTVRFHKEKIQNVIEKGFANVGTHCS------EENVRKVLNRALNQIEAANL 110

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + IE IQDQVE + ++ G  +  + +  YR++R+  R 
Sbjct: 111 PQ--IEIEKIQDQVEEAFVEEGFIEEYKAFKNYRQKRAVARD 150


>gi|313676821|ref|YP_004054817.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
 gi|312943519|gb|ADR22709.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
          Length = 702

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG        KI  AI KAF +V  +         D+I       +  +L+  +  
Sbjct: 5   VIKRNGEYQPLKHYKIEDAIKKAFKSVGVEY--------DVI------ILKSVLEKLEEK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
               +E+IQD +E  L    + K+ R ++LYR  R   R  +   K D 
Sbjct: 51  TTWAVEEIQDIIELQLYHYHYFKVMRSFMLYRHTRKLQRNQKKGIKHDT 99


>gi|154175399|ref|YP_001407350.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           curvus 525.92]
 gi|112802436|gb|EAT99780.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           curvus 525.92]
          Length = 701

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G    F   KI  AI KAF +                + +    V  + Q    
Sbjct: 3   EILKRDGTRQEFVAYKIVDAIKKAFESENTPYD----------EKIFTNVVQDIFQK--- 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           +  + +EDIQD +E  L +  +  I + ++LYR      R        D       + + 
Sbjct: 50  SGAITVEDIQDAIEKELFEGHYFNILKSFMLYRHTHKLQREQVLGLNEDTTYINSTQTIN 109

Query: 150 D 150
           +
Sbjct: 110 E 110


>gi|212709921|ref|ZP_03318049.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
 gi|212687433|gb|EEB46961.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
          Length = 728

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 17  SLAYPFPEKIKGVQV----IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           ++A P  + I+ + V    IKR+G   +FD  +I           +      +  V    
Sbjct: 3   AIASPVRDLIRSMTVKTVVIKRDGCQVNFDLPRI-----------QEAVRRAAAAVDVKD 51

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            +   Q  T + +       V I +IQD VE  LM   +  + R Y+ YR +R   R  +
Sbjct: 52  DDYCLQVATVVSEQLCHREKVDIAEIQDAVENQLMSGPYKDLARAYIEYRHDRDSEREKR 111

Query: 133 SHSKSD 138
           S    +
Sbjct: 112 SQLTHE 117


>gi|295104971|emb|CBL02515.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 731

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G    FD SKI  AI KA      G  +  S  + D I ++              
Sbjct: 4   VIKRDGTKVPFDKSKIVNAIEKAMTNTTGGVDSRVSNAIADYIADI-------------- 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
              + +E IQD V   L  S    +   Y  +R  R ++R  Q   
Sbjct: 50  HDTMSVEQIQDVVIDQLKNSPLSDVADAYSHWRILRQEIREKQRAY 95



 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV---LSETYKNMYDGLSESDLETALI 203
           ++  DGT + F+  ++   +E+A +         V   +++   +++D +S   ++  +I
Sbjct: 4   VIKRDGTKVPFDKSKIVNAIEKAMTNTTGGVDSRVSNAIADYIADIHDTMSVEQIQDVVI 63

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRRE 231
              +     +   A    R L +++R +
Sbjct: 64  DQLKNSPLSDVADAYSHWRILRQEIREK 91


>gi|160946438|ref|ZP_02093647.1| hypothetical protein PEPMIC_00398 [Parvimonas micra ATCC 33270]
 gi|158447554|gb|EDP24549.1| hypothetical protein PEPMIC_00398 [Parvimonas micra ATCC 33270]
          Length = 707

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL-LQHN 87
           ++VIKRNG    FD +KI+ AI KA  +  G             + L E+  + +     
Sbjct: 2   IKVIKRNGQEVDFDANKIAIAINKAMHSSTGVYE----------EGLAEKIASEIETFAT 51

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                + I DI+D V  SL++ G+    R Y  Y+  ++  R   +  +S
Sbjct: 52  TIGKKMSIYDIEDHVYYSLIKYGNPATARAYENYKAVQTFKRLKNTTDES 101


>gi|187935520|ref|YP_001884381.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723673|gb|ACD24894.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 701

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KIS+AI  A  A+E     R  +V + I+ +         +   
Sbjct: 2   LYVVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETIQKVIMYIEDTKKEK-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S
Sbjct: 58  ----ITVEAIQNLVEKAL-REEDKNIAFAYSSYRRERTRVRDIKS 97


>gi|38637904|ref|NP_942878.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia eutropha
           H16]
 gi|4127320|emb|CAA10041.1| NrdD protein [Ralstonia eutropha H16]
 gi|32527242|gb|AAP85992.1| anaerobic class III ribonucleotide reductase [Ralstonia eutropha
           H16]
          Length = 676

 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR G   +F   +I         +   +  + +    D         V R+L H   
Sbjct: 15  EVIKRTGESMAFAIERI--------QSALRRAGAAAGEFGDAQAVSLAGQVARVLAHRYH 66

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
                +E IQD VE  L+ + +    R ++ YR + + +R  +  
Sbjct: 67  NQTPGVEQIQDVVEQVLIAANYWNTARAFIAYRGQHARLRQDRKA 111


>gi|167746967|ref|ZP_02419094.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
 gi|167653927|gb|EDR98056.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
          Length = 719

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G G       +DI   + E+        ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMR--YGSGVVDEKCAKDISFEIHEE--------HQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + I  I+DQV   L+Q       + Y  YR+ R   R   +    
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVREFQRETNTIDNE 99


>gi|317471779|ref|ZP_07931118.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900756|gb|EFV22731.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 719

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G G       +DI   + E+        ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMR--YGSGVVDEKCAKDISFEIHEE--------HQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + I  I+DQV   L+Q       + Y  YR+ R   R   +    
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVREFQRETNTIDNE 99


>gi|269137781|ref|YP_003294481.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella tarda
           EIB202]
 gi|267983441|gb|ACY83270.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella tarda
           EIB202]
 gi|304557838|gb|ADM40502.1| Ribonucleotide reductase of class III large subunit [Edwardsiella
           tarda FL6-60]
          Length = 712

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++         A  +            + V   +   +  
Sbjct: 5   VIKRDGCQVPFNEQRIKEAVLR--------AALAADVDDADYCATVARVVAMQMADRER- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 56  --VDINDIQHAVENQLMAGNYKQLARAYIEYRHDRDVAREQRGRLNQD 101


>gi|282883212|ref|ZP_06291811.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297024|gb|EFA89521.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
          Length = 707

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKRNG    FD  KI+ AI KA  +  G      + V+D  + +  +        N 
Sbjct: 2   LTVIKRNGTEVPFDKEKITVAIEKAMNSTTG------VFVEDQAEKIAREIEE---YANT 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             + + I DI+ +V   L+   +    R Y  Y+  +   R   +       +  +  I 
Sbjct: 53  KEVPMSIYDIETEVYYKLINYNNPATARAYESYKSVQQYKREQNTTDNEILGLLNETNID 112

Query: 149 MDD 151
           + D
Sbjct: 113 VMD 115


>gi|188589097|ref|YP_001919565.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499378|gb|ACD52514.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 701

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KIS+AI  A  A+E     R  +V + ++ +               
Sbjct: 4   VVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETVQKVIMYIEDT------KK 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S
Sbjct: 56  DKITVEAIQNLVEKALGEED-KNIAFAYSSYRRERTRVRDIKS 97


>gi|251779984|ref|ZP_04822904.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084299|gb|EES50189.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 701

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KIS+AI  A  A+E     R  +V + ++ +               
Sbjct: 4   VVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETVQKVIMYIEDT------KK 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S
Sbjct: 56  DKITVEAIQNLVEKALGEED-KNIAFAYSSYRRERTRVRDIKS 97


>gi|307720177|ref|YP_003891317.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978270|gb|ADN08305.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 702

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF++                         +++Q   + 
Sbjct: 5   ILKRDGSYKQFFSYKIEDAIKKAFLSEHVDFDET--------------VYIKVIQRLDAK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            +V +EDIQD +E  L ++ +  + R ++LYR      R       + 
Sbjct: 51  RVVAVEDIQDIIEQELFKAKYFDVMRSFMLYRHLHKLQRDNLLEDDTT 98


>gi|322779112|gb|EFZ09483.1| hypothetical protein SINV_11842 [Solenopsis invicta]
          Length = 92

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++Y+  + L   Y L ING   E PQ   MRVA+G+   + +K    +E YN LS  +F 
Sbjct: 18  YDYIDFKTLERSYLLKINGKMGERPQHMLMRVAIGIHENDIDK---VIETYNYLSEQYFT 74

Query: 353 CSTPTLFNSGTR 364
              PTLFN+ T+
Sbjct: 75  HPLPTLFNACTK 86


>gi|308049531|ref|YP_003913097.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
 gi|307631721|gb|ADN76023.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
          Length = 706

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F P  I +A+++A  A        +  V   +    E             
Sbjct: 5   VIKRDGCRVPFKPELIQQAVLRAATAAGCDDLVYAAGVAQAVAAQLE-----------GE 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 54  SEVAINRIQDAVENQLMEGPYKDLARSYIEYRHDRDLAREKASRLNQE 101


>gi|212635935|ref|YP_002312460.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           piezotolerans WP3]
 gi|212557419|gb|ACJ29873.1| Ribonucleoside-triphosphate reductase [Shewanella piezotolerans
           WP3]
          Length = 705

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +     ++ +    + +      +V  L +     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAAANSAGIDDSAYA----EKVAKNAADSVAMLDE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 55  --INIHDLQDAVENLLMEGPYKSLARVYIEYRHDRDIKREVSSRLNKE 100


>gi|323343205|ref|ZP_08083436.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463269|gb|EFY08464.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 783

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E ++ + ++KR+     F+  KI+ AI K F ++E    S      D   ++  + + ++
Sbjct: 5   EHLEKITILKRDNQKMKFNGEKIAIAIKKGFDSLESNKYSN-----DDANHVYMEVLKQI 59

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +       + IE IQD +E  L++  +  +   +  YR  R++ R 
Sbjct: 60  EEIATHEDYISIEHIQDLIERELLRQNYTDVYESFSQYRNRRNESRK 106


>gi|224541172|ref|ZP_03681711.1| hypothetical protein CATMIT_00325 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525923|gb|EEF95028.1| hypothetical protein CATMIT_00325 [Catenibacterium mitsuokai DSM
           15897]
          Length = 722

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   +FD SKI  AI+KA            I   +I   ++ +       H  
Sbjct: 1   MEVIKRDGSKVAFDGSKIENAILKAMR------YGSGIVKPEIASKISHEIED---WHKS 51

Query: 89  SALI-VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           S    + I  I+ QV   L++ G     + Y  YR+ R   R   +   +   I  +   
Sbjct: 52  SGAASISIYRIEGQVFEKLIEKGEVLTAKAYEGYRKVREFQRETNTIDNAIYGIVNQTNK 111

Query: 148 MMDD 151
              D
Sbjct: 112 EAMD 115


>gi|153809894|ref|ZP_01962562.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
 gi|149834072|gb|EDM89152.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
          Length = 763

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +L    VT   Q+      V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S
Sbjct: 13  DLLALRVTADFQNKIQDGKVTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKS 72

Query: 134 H 134
            
Sbjct: 73  T 73


>gi|14270378|emb|CAC39437.1| UL39 protein [Suid herpesvirus 1]
          Length = 367

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYN 344
                 + Y   +   R E    FF+R            +A+ L   +   E     ++ 
Sbjct: 193 SALKYEEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFDA-YFR 251

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGAL-QENAMLAKYSGGLGN 402
            L++   + +TP +  +G     L+SC+L   +P        A+  E A +    GG+G 
Sbjct: 252 ALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGL 311

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
                    +        ++G++  LK  +    A+N   +R   VC Y+E WH DV   
Sbjct: 312 SLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAV 366

Query: 463 L 463
           L
Sbjct: 367 L 367


>gi|197337531|ref|YP_002157872.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
 gi|197314783|gb|ACH64232.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
          Length = 706

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   ++  S+I  A+  A           S +V   I++  +     +    
Sbjct: 2   NITVIKRDGSRAAYKSSRIIDAVKGA-----------SEQVTPEIESYAKLVAHAVEIAL 50

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +    V I  IQ+ VE  LMQ  H  + R Y+ YR +R   R   S    +
Sbjct: 51  QGQQEVGIRQIQELVENELMQGPHKVLARAYIEYRHDRDIAREKISVLNKE 101


>gi|59713464|ref|YP_206239.1| anaerobic ribonucleoside triphosphate reductase [Vibrio fischeri
           ES114]
 gi|59481712|gb|AAW87351.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           ES114]
          Length = 706

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   ++  S+I  A+  A           S +V   I++  +     +    
Sbjct: 2   NITVIKRDGSRAAYKSSRIIDAVKGA-----------SEQVTPEIESYAKLVAHAVEIAL 50

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +    V I  IQ+ VE  LMQ  H  + R Y+ YR +R   R   S    +
Sbjct: 51  QGQQEVGIRQIQELVENELMQGPHKVLARAYIEYRHDRDIAREKISVLNKE 101


>gi|312897931|ref|ZP_07757344.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           micronuciformis F0359]
 gi|310620965|gb|EFQ04512.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           micronuciformis F0359]
          Length = 716

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIKR+G    FD  KI+ AI KA  +  G     ++ R+   I++  ++    +    
Sbjct: 2   LEVIKRDGTKVPFDRKKIAVAIEKAMNSSSGIYEDGQADRIAKEIEDYAKEMHKEM---- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                  I  I+DQV   L+Q+ +    R Y  Y+  ++  R   +    
Sbjct: 58  ------TIYAIEDQVYYRLIQANNPATARAYENYKTIQAFKRQTNTTDTD 101


>gi|303229516|ref|ZP_07316304.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515641|gb|EFL57595.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 716

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD  KI+ AI KA      + +S  +    + + + ++     ++  K
Sbjct: 2   LQVIKRDGTKVPFDKHKIAVAIEKA------EHSSTGLYESGLAERIADEIEAYAIKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +  +    +  +  + 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDEDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|303231093|ref|ZP_07317833.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514224|gb|EFL56226.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 716

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD  KI+ AI KA      + +S  +    + + + ++     ++  K
Sbjct: 2   LQVIKRDGTKVPFDKHKIAVAIEKA------EHSSTGLYESGLAERIADEIEAYAIKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +  +    +  +  + 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDEDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|164686957|ref|ZP_02210985.1| hypothetical protein CLOBAR_00583 [Clostridium bartlettii DSM
           16795]
 gi|164603842|gb|EDQ97307.1| hypothetical protein CLOBAR_00583 [Clostridium bartlettii DSM
           16795]
          Length = 710

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + +IKR+G    FD  KI  AI+KA            +  +DI KN+ ++     LQ 
Sbjct: 4   ANLNIIKRDGSKAEFDKLKIENAILKAMK------YGSGVLEEDIAKNIADEIEKIYLQG 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           + S  +  +E+    V   L+        + Y  YR  +S  R   +   S
Sbjct: 58  SPSPTVSKVEE---LVYKELIDHKQELTAKAYEGYRAVQSFKREVNTTDDS 105


>gi|238019525|ref|ZP_04599951.1| hypothetical protein VEIDISOL_01394 [Veillonella dispar ATCC 17748]
 gi|237864224|gb|EEP65514.1| hypothetical protein VEIDISOL_01394 [Veillonella dispar ATCC 17748]
          Length = 716

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + + ++      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQLIADEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +       +  +  + 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|315928437|gb|EFV07749.1| ATP cone domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 91

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLL 225
           ++   I+ + PN+  V AR  L
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFL 82


>gi|326791108|ref|YP_004308929.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541872|gb|ADZ83731.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 706

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   +FD  KI  AI+KA            I  QDI + ++ +  + + +   
Sbjct: 1   MKVIKRDGEAVAFDEGKIYSAIIKAM------TYGSGIVDQDIARKISMEIKSLVSKLPA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           S  I  IE     V   L+++GH    + Y  YR  ++  R   +  +S
Sbjct: 55  SPTIFQIET---YVYLKLIENGHELTAKAYEGYRAIQAFKRETNTTDQS 100


>gi|111184257|gb|ABH08177.1| HSPV074a [Horsepox virus]
          Length = 80

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 19/96 (19%)

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL 
Sbjct: 1   MAADRGAFIDQSQSMNIHIADPSYFKLTSMHFYGWSLGLKTEMYYLRTKPASAPIQFTLD 60

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K                  P        C  C
Sbjct: 61  KDKIK------------------PPVVCDSEICTSC 78


>gi|149190192|ref|ZP_01868467.1| anaerobic ribonucleoside triphosphate reductase [Vibrio shilonii
           AK1]
 gi|148835939|gb|EDL52901.1| anaerobic ribonucleoside triphosphate reductase [Vibrio shilonii
           AK1]
          Length = 706

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A++ A    + +       ++   KN+      +L    +  
Sbjct: 5   VIKRDGSRAPFTKDRIEAAVVSAAEHADKE-------LEIYAKNVALAVELKL----QDC 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I++IQ  VE  LMQ  +  + R Y+ YR +R   R  +S    +  
Sbjct: 54  EHVDIQEIQTAVENELMQGPYKGLARSYIEYRHDRDIAREKKSALTKEIE 103


>gi|313892720|ref|ZP_07826301.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442651|gb|EFR61062.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 716

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKA-FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           +QVIKR+G    FD  KI+ AI KA   +        + R+ D I+   ++         
Sbjct: 2   LQVIKRDGTKVPFDKHKIALAIEKAEHSSTGLYEEGLAQRIADEIEEYAQKL-------- 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                + I  I+DQV   L++  +    R Y  Y+  ++  R   +       +  +  +
Sbjct: 54  --QKDMTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNV 111

Query: 148 MMDD 151
            + D
Sbjct: 112 SVLD 115


>gi|294791657|ref|ZP_06756805.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           6_1_27]
 gi|294456887|gb|EFG25249.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           6_1_27]
          Length = 716

 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|269797749|ref|YP_003311649.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula DSM 2008]
 gi|269094378|gb|ACZ24369.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula DSM 2008]
          Length = 716

 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|282849022|ref|ZP_06258411.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|294793515|ref|ZP_06758652.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           3_1_44]
 gi|282581297|gb|EFB86691.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|294455085|gb|EFG23457.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           3_1_44]
          Length = 716

 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  D---MTIYAIEDQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|78777437|ref|YP_393752.1| anaerobic ribonucleoside triphosphate reductase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497977|gb|ABB44517.1| Ribonucleoside-triphosphate reductase, anaerobic [Sulfurimonas
           denitrificans DSM 1251]
          Length = 698

 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G    F   KI  AI KAF +      S                   +L   K+
Sbjct: 4   NILKRDGTHKEFLSFKIEDAIKKAFKSQNIIYDSS--------------IFFNVLDELKN 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             ++ +EDIQD +E  L +S +  + R +++YR      R +
Sbjct: 50  KRVIAVEDIQDLIEKELYKSRYFDVMRSFMIYRHTHKMQRDS 91


>gi|288803351|ref|ZP_06408784.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
 gi|288334171|gb|EFC72613.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
          Length = 696

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 47  SRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSL 106
             AI+KAF +V                     T+++++ +      + +EDIQ+QVE +L
Sbjct: 1   MNAILKAFESVNEPTDLG--------------TLSKIIANLNIQNDIKVEDIQNQVELAL 46

Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSK 136
           M+ G++++ + +++YR++ ++ R      K
Sbjct: 47  MKEGYYQVAKSFIVYRQQHTEDRETLEKMK 76


>gi|269957087|ref|YP_003326876.1| anaerobic ribonucleoside-triphosphate reductase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305768|gb|ACZ31318.1| anaerobic ribonucleoside-triphosphate reductase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 765

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKA-FMAVEGKGASRSIRVQDII 72
           A P+L    P       VIKR+G  T++D  ++  AI  A   A     A     +  ++
Sbjct: 14  ATPTLLVTAPT------VIKRDGTRTTYDLRRVRDAIRPAWMRA--WDDAVDESELAAVV 65

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             +  +   R          V + +IQ  VE +L+++GH  +   Y  YR E+   R   
Sbjct: 66  AAVDGEIFRRF------PTDVKVYEIQAIVEQTLIETGHGDVAEIYATYRLEKDLRRKQA 119

Query: 133 SHSKSDAPIAPKLKIMMDDGTLIS----FNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
              +         ++  ++    S        R+   V +A  GL  +  ++  +     
Sbjct: 120 FSVEHQVGRLTDSEVANENANKDSRVFHVQRDRMAGSVAKA-RGLAMLPPRVASAHIKGQ 178

Query: 189 MY 190
           ++
Sbjct: 179 IH 180


>gi|257066494|ref|YP_003152750.1| anaerobic ribonucleoside triphosphate reductase [Anaerococcus
           prevotii DSM 20548]
 gi|256798374|gb|ACV29029.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           prevotii DSM 20548]
          Length = 706

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    F+  KI  AI KA  +  G            ++N        +     
Sbjct: 2   IQVIKRDGSKAKFEKDKIVIAIEKAMKSASGVF----------VENQAMDIANEIESEAL 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  I+D V   L+   +    + Y  Y+  ++  R   +       +  +  I 
Sbjct: 52  DGDDISIYKIEDMVYYKLINRKNPATAKSYESYKSVQAYKREQNTSDDDILGLLNQTNID 111

Query: 149 MDD 151
           + D
Sbjct: 112 VMD 114


>gi|261251118|ref|ZP_05943692.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio orientalis CIP 102891]
 gi|260937991|gb|EEX93979.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio orientalis CIP 102891]
          Length = 706

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S  +     N+      +L   ++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAAADH-------NSQEIAIYALNVALAVELKLQDRDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I ++Q  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 56  --VEITEVQSLVEDELMQGPYKGLARSYIEYRHDRDTAREKQSALTQEIE 103


>gi|261819761|ref|YP_003257867.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           wasabiae WPP163]
 gi|261603774|gb|ACX86260.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           wasabiae WPP163]
          Length = 712

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I             + A+R+  V D   +        + Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKE---------AVERAARAADVND--ADYCATVACAVAQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   + ++ R Y+ YR +R   R        +
Sbjct: 54  SRVDIRDIQDAVENLLMSGNYKQLARTYIEYRHDRDIARERHGRLNQE 101


>gi|221316540|ref|ZP_03598345.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 108

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYI---EEGVKARLLHESMMDFDLVYLANDLKYER 289
           L  +YK+  K   ++ +  Y +++   +   E+G+    +  +    +LV   N +  ER
Sbjct: 6   LQELYKRASKNRSYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPER 65

Query: 290 DFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALK 331
           D  F++ GL  L  RY +        E+PQ  FM  A+ L + 
Sbjct: 66  DELFDFAGLHSLSGRYCVKDFDKSVYELPQERFMIAALHLMMP 108


>gi|168334507|ref|ZP_02692673.1| anaerobic ribonucleoside-triphosphate reductase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 707

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  FD  KI  AI+KA            +   +I K +  +   + LQ   
Sbjct: 1   MDVIKRDGQVVQFDEGKIYNAIVKAMR------FGSGMVNLEIAKKIAFEIKEKFLQ--T 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             +I  I  I+ +V   L+ + H    + Y  YR  ++  R   +   S
Sbjct: 53  PKVIPTIFQIETEVYLKLIDNNHQITAKSYEGYRAIQAFKRETNTTDNS 101


>gi|254508355|ref|ZP_05120477.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus 16]
 gi|219548769|gb|EED25772.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus 16]
          Length = 706

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A      + A  ++ V   ++              +  
Sbjct: 5   VIKRDGSRAEFTRDRIQAAVEAAADHNSKETAIYALNVALAVEL-----------KLQDR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I ++Q  VE  LMQ  + ++ R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVEITEVQKLVEDELMQGPYKELARAYIEYRHDRDIAREKQSALTQEIE 103


>gi|196046441|ref|ZP_03113666.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225863316|ref|YP_002748694.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228914024|ref|ZP_04077646.1| Ribonucleotide reductase, alpha subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229090406|ref|ZP_04221649.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus Rock3-42]
 gi|229183645|ref|ZP_04310868.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus BGSC 6E1]
 gi|301052992|ref|YP_003791203.1| ribonucleoside-diphosphate reductase subunit alpha, C-terminal
           domain-containing protein [Bacillus anthracis CI]
 gi|196022625|gb|EDX61307.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225787696|gb|ACO27913.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228599888|gb|EEK57485.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228692989|gb|EEL46707.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus Rock3-42]
 gi|228845629|gb|EEM90658.1| Ribonucleotide reductase, alpha subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375161|gb|ADK04065.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 106

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
             +  +   +  +  D    + ++++++   LI+  +  Q+ IDQ  S  LY++   S +
Sbjct: 12  YANATTYYPMPYLSKDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTR 71

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +L   Y  A   GLK+ YY R+R  +  E
Sbjct: 72  ELARYYIYAHKKGLKSLYYTRTRKLSVEE 100


>gi|282600036|ref|ZP_05972779.2| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rustigianii DSM 4541]
 gi|282566824|gb|EFB72359.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rustigianii DSM 4541]
          Length = 728

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I           +      +  V     +      T + +     
Sbjct: 21  VIKRDGCQVNFDLPRI-----------QEAVRRAAAAVDVKDDDYCHHVATTVAEQLCCR 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 70  ETVDIAEIQDAVEDQLMSGPYKDLARAYIEYRHDRDSEREKRSKLTHD 117


>gi|34557096|ref|NP_906911.1| anaerobic ribonucleoside triphosphate reductase [Wolinella
           succinogenes DSM 1740]
 gi|34482811|emb|CAE09811.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 702

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G    F P KI  AI KAF +V  +                ++  T ++   +S
Sbjct: 4   HIFKRDGHAEKFQPYKIEDAIKKAFESVNVRYD--------------DRIYTNVILAIES 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             +  +E IQD++E    ++G+  + + ++ YR      R        D 
Sbjct: 50  ENLNSVECIQDRIELEFFKAGYFAVMKSFMNYRFLHKMQREHIYGLSEDT 99


>gi|218662239|ref|ZP_03518169.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 117

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 16  EKLDYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDG 74

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TP
Sbjct: 75  KRYLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATP 117


>gi|227499470|ref|ZP_03929581.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218532|gb|EEI83775.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
          Length = 711

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +++F+ +KI  AI KA  +  G            + N   +    +     
Sbjct: 7   LKVIKRDGSLSNFEKNKIVVAIEKAMNSPSGVF----------VSNQALEIANEIESEAL 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + I DI+D+V   L+   +    + Y  Y+  ++  R   +       +  +  I 
Sbjct: 57  NIDKISIYDIEDKVYYKLIDRNNPATAKSYESYKSVQAYKREINTSDDDILGLLNQTNID 116

Query: 149 MDD 151
           + D
Sbjct: 117 VMD 119


>gi|196248887|ref|ZP_03147587.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           sp. G11MC16]
 gi|196211763|gb|EDY06522.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           sp. G11MC16]
          Length = 262

 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSGTRH- 365
              +E+  +    R A GLA  E  +EKR   F   Y  LSS +F+ +   L+ +G+   
Sbjct: 123 DKPLEIFYEQIAKRNATGLAAVEKTEEKRNEWFQKFYEELSSMNFVPAGRVLYGAGSGKE 182

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKR 444
           + +L         V QGG R
Sbjct: 243 VSWLDDIAKLTHLVEQGGSR 262


>gi|226941177|ref|YP_002796251.1| anaerobic ribonucleoside triphosphate reductase [Laribacter
           hongkongensis HLHK9]
 gi|226716104|gb|ACO75242.1| NrdD [Laribacter hongkongensis HLHK9]
          Length = 705

 Score = 78.3 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F+ ++I+ A+  A  A     A     +   I +                
Sbjct: 5   IIKRDGCRAPFNATRIAEAVDAARRACAHADAGLGNALARTIGDELAGREE--------- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ +VE  LM +   ++ R Y+ YR +R   R A+     D
Sbjct: 56  --VDIHEIQTRVEDLLM-AQAPEVARAYIEYRHDRDLAREARGRLAQD 100


>gi|60416880|emb|CAD71200.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 83

 Score = 78.3 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLM 895
           +       +  A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   
Sbjct: 1   LSAQNWFYYKEAYDMDMFKVVDMIAAIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHK 60

Query: 896 GLKTTYYLRSRS 907
           G+KT YY R++ 
Sbjct: 61  GIKTLYYARTKD 72


>gi|77409841|ref|ZP_00786479.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae COH1]
 gi|77171549|gb|EAO74780.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae COH1]
          Length = 88

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               ++VIKR+G + SFD  KI  A++KA   V         +++ I  ++  +   R  
Sbjct: 2   TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFX 61

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            +      + I +IQ+ VE  L+++  + I +E
Sbjct: 62  DN------IZIYEIQNIVEHKLLEANEYAIAQE 88


>gi|300362835|ref|ZP_07059006.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
 gi|300353071|gb|EFJ68948.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
          Length = 187

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      +   +    +   L  E     ++     + + + +     +     L Y +
Sbjct: 32  KEATKQYLENHIEPRMKKFASL-EEKLAYLVDNNYYDKKVLD-LYTAKFIKEIFKLAYAQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F+F  ++G    Y  Y L  N ++  +E  +   +  A+ LA      E+ A+     +
Sbjct: 90  NFSFLNFMGAAKFYKAYALKTNDNKQFLERFEDRAVMNALFLA---DGNEELALNLVKDI 146

Query: 347 SSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGA 386
            S  F  +TPT  N+G  R  +  SC+L  V D++  I  A
Sbjct: 147 ISNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRA 187


>gi|113951970|gb|ABI48920.1| NrdA [Enterobacteria phage LZ2]
          Length = 150

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 38/173 (21%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS   A+ P  + + +   +  I+P    + VK +  G F  V               
Sbjct: 1   IRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEGSFNQVVP------------- 47

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                       +I +   + D   K+            +   +   KW+ Q+ S N Y 
Sbjct: 48  ------------NIEHNIDLYDYTWKLAKKGN----KPYLTQVAIMLKWVCQSASANTYY 91

Query: 878 DE--------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           D         P    +D +    W  G+K  YY  +R  +  +   ++    +
Sbjct: 92  DPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNTRDGSGTDDYEIETPKAE 143


>gi|291522482|emb|CBK80775.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 714

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + +IKRNG    FD +KI  A+  A   V+ +      ++Q +++  ++Q +     
Sbjct: 1   MSNM-IIKRNGTKMDFDGTKIYNAVAAANAEVKPEHVLSEAQLQTVVEMASKQILA---- 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              S   + +E+IQD VE ++M    +++ + Y+ YR  R   R + +   
Sbjct: 56  ---SEKDMSVEEIQDIVELAIMSVRGYEVAQHYIRYRHNRELARRSNTTDD 103


>gi|241589596|ref|YP_002979621.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
 gi|240868308|gb|ACS65967.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
          Length = 442

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 36/180 (20%)

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT----- 652
           +V NL          NN FD  +L   IR AVR LD++ D+         K         
Sbjct: 215 SVINLCDYLADTPRENNWFDSKRLEEQIRLAVRELDSMHDV---------KETLGCLGQP 265

Query: 653 --HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IG+G+ G   AL  L +   + +A     +    +   A  AS +LA+E GA   
Sbjct: 266 GLGRRIGIGISGVAFALQQLGVAGNADKARAALAQVTRIVRDEAYRASCDLAEEVGASPW 325

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F    +  G                            EL +R++T G+RN++    A  A
Sbjct: 326 FDSVEFHTGPVADQLPP--------------------ELVERIRTYGLRNAHIFGWALMA 365


>gi|308189133|ref|YP_003933264.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
 gi|308059643|gb|ADO11815.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
          Length = 712

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD  +I +             A+R+  V D       Q   R+       
Sbjct: 5   VIKRDGCRTGFDAQRIEQ---------AVMAAARAAEVDDAAW--CAQVAERVALRLADR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I +IQ  VE +LM   + ++ R Y+ YR +R   R  QS    
Sbjct: 54  PEVDISEIQCAVEETLMAGPYPQLARAYIEYRHDRDVARDRQSQLHH 100


>gi|295399143|ref|ZP_06809125.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110254|ref|YP_003988570.1| ribonucleotide reductase large subunit [Geobacillus sp. Y4.1MC1]
 gi|294978609|gb|EFG54205.1| Ribonucleotide reductase large subunit domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215355|gb|ADP73959.1| ribonucleotide reductase large subunit [Geobacillus sp. Y4.1MC1]
          Length = 262

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSGTRH- 365
              +E+  +    R A GLA  E  +EKR   F   Y  L S +F+ +   L+ +G+   
Sbjct: 123 DKPLEIFYEQIAKRNATGLAAVEKTEEKRKEWFEKFYQELVSLNFVPAGRVLYGAGSGKD 182

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPYVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKR 444
           + +L         V QGG R
Sbjct: 243 VSWLDDIAKLTHLVEQGGSR 262


>gi|37676555|ref|NP_936951.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           YJ016]
 gi|37201097|dbj|BAC96921.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Vibrio
           vulnificus YJ016]
          Length = 706

 Score = 77.1 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|320158663|ref|YP_004191041.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
 gi|319933975|gb|ADV88838.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 706

 Score = 77.1 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|304439573|ref|ZP_07399478.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371952|gb|EFM25553.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 706

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG    FD SKI  AI KA  +  G      + V+   K + ++        NK
Sbjct: 1   MYVRKRNGDRVPFDKSKIEIAINKAMHSSNG------VFVEGQAKAIADEIYEDAKALNK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I DI++QV   L+   +    R Y  Y+  ++  R + +       +  +  I 
Sbjct: 55  E---LSIYDIEEQVYYRLINLNNPATARAYESYKSVQAFKRESNTTDDEIIGLLDQTNIE 111

Query: 149 MDD 151
           + D
Sbjct: 112 VID 114


>gi|307243878|ref|ZP_07526003.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492700|gb|EFM64728.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 706

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +  IKR+G    FD SKI  AI KA            +   DI + +        L+   
Sbjct: 1   MYAIKRDGTTVPFDRSKIRIAIEKAMK------NGSGLYHPDIAEAVARDCENHFLKL-- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 I  I+  V   L+   H +  R Y  YR  +   R   +   S
Sbjct: 53  -DETPTIYKIEGFVYDRLIHYNHSETARAYEGYRAVQQFKRQVNTTDDS 100


>gi|27366780|ref|NP_762307.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           CMCP6]
 gi|27358347|gb|AAO07297.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio vulnificus
           CMCP6]
          Length = 706

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|319767470|ref|YP_004132971.1| ribonucleotide reductase large subunit [Geobacillus sp. Y412MC52]
 gi|317112336|gb|ADU94828.1| ribonucleotide reductase large subunit [Geobacillus sp. Y412MC52]
          Length = 262

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEF---YNLLSSFHFMCSTPTLFNSGTRH- 365
              +E+  +    R A GLA  E  +EKR   F   Y  L+S +F+ +   L+ +G+   
Sbjct: 123 DKPLEIFYEQIAKRNATGLAAVEKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKE 182

Query: 366 -PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +   +  V D   GI    ++   +    GG+G + + +R       G NGKS G 
Sbjct: 183 VTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGS 242

Query: 425 IPFLKVANDTAVAVNQGGKR 444
           + +L         V QGG R
Sbjct: 243 VSWLDDIAKLTHLVEQGGSR 262


>gi|306820567|ref|ZP_07454198.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551384|gb|EFM39344.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 708

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  +I RAI KA            I    I  ++ ++      +  K  
Sbjct: 5   VIKRNGKEVDFDKQRIVRAIEKAMK------YGSGIYSYQIAVDIAKEIYEECEE--KQT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I  I+++V   L+  G +   R Y  Y+  R+  R   +  K+   +  +   ++ 
Sbjct: 57  DKISIFTIEEKVFNKLIAHGQNDTARAYEAYKAIRTYQRENNTTDKNIMSLVDRTNEVLI 116

Query: 151 D 151
           +
Sbjct: 117 N 117



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G  + F+ +R+   +E+A      + S  +  +  K +Y+   E   +   IF+ 
Sbjct: 5   VIKRNGKEVDFDKQRIVRAIEKAMKYGSGIYSYQIAVDIAKEIYEECEEKQTDKISIFTI 64

Query: 207 RTLI 210
              +
Sbjct: 65  EEKV 68


>gi|303234116|ref|ZP_07320762.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           BVS033A4]
 gi|302494657|gb|EFL54417.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           BVS033A4]
          Length = 707

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +  G             +NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNSSTGIYE----------ENLAEKIAKEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|80648|pir||C41476 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain
           homolog - Mycobacterium leprae (fragment)
          Length = 57

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            T+R AVR LD VID+N + IE A+++N   R +GLG MG Q     L +P+ S  A
Sbjct: 1   ETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGAMGLQDVFFKLRLPFDSEPA 57


>gi|169824875|ref|YP_001692486.1| anaerobic ribonucleoside triphosphate reductase [Finegoldia magna
           ATCC 29328]
 gi|302379554|ref|ZP_07268039.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831680|dbj|BAG08596.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ATCC 29328]
 gi|302312461|gb|EFK94457.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 707

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +  G             +NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNSSTGIYE----------ENLAEKIAKEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|227545416|ref|ZP_03975465.1| ribonucleotide reductase, alpha subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300908501|ref|ZP_07125964.1| ribonucleoside-triphosphate reductase [Lactobacillus reuteri
           SD2112]
 gi|227184608|gb|EEI64679.1| ribonucleotide reductase, alpha subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300893908|gb|EFK87266.1| ribonucleoside-triphosphate reductase [Lactobacillus reuteri
           SD2112]
          Length = 734

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 85/519 (16%), Positives = 164/519 (31%), Gaps = 112/519 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D T +R  GA IHG  G + G  P +++  D    +N       +         +D  +
Sbjct: 253 LDMTNIRPRGAKIHGFGGTASGPTPLIEMLQDVNKVLNAKDGTNLSA--------VDCTD 304

Query: 462 FLDL--RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
             +L  +     + RR+ ++   +     F+          L      S+      K+F+
Sbjct: 305 ICNLIGKAVVAGNVRRSAELALGSGNNHQFITMKQDQEK--LQHHRWASNNSISIDKDFD 362

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT------FKDPCNIRSPQ 573
                                     ++++   + E G P I                 +
Sbjct: 363 H-------------------------FQEVADSIQENGEPGIVNTSLSKNYGRIADGYQK 397

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
              G V  +N C EI+L +       CNL  +         +     L    R  VR   
Sbjct: 398 NIDGDVEGTNPCGEISLANGEP----CNLFEV----FPLVAEKQGWDLNDAFRLGVRFAK 449

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V   + +  E ++K    +R IG+ + G Q  +             +  +         
Sbjct: 450 RV-TFSHYDWEVSRKMIQKNRRIGISMSGIQDWIL-----------NDFGNRV------- 490

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                                      F  ++ G++  V D+  +++ + L    +    
Sbjct: 491 ------------------------VTGFAKNNDGVMEPVYDQRVIDKFNTLYQAVINADK 526

Query: 754 KTIGMRNSNC----MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +     N N       + P+ T+A + GVS+ +   Y    ++     D       L++ 
Sbjct: 527 EYSAELNCNLSIKHTTVKPSGTVAKLAGVSEGMHFHYAGYLIQRIRFQDT----DPLLDA 582

Query: 810 LKQRDLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WI 867
           LK+       M  D+   H   +    +  +   K  A+A  +       + +  QK W 
Sbjct: 583 LKECGY---RMEPDIYTDHTICVEFPVKATNAENKNFASAGNVSIAEQFATQAFLQKYWS 639

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YY 902
           D A S  +        ++  + +Q +L G+K+T    YY
Sbjct: 640 DNAVSCTITFQNKEAAQIPVLLKQ-YLNGIKSTSLLPYY 677


>gi|302793899|ref|XP_002978714.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
 gi|300153523|gb|EFJ20161.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
          Length = 90

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFM+RV  N+  +LF P++   L D +G+EFE  Y  Y+++      +  R +S   LW
Sbjct: 1   DLFMERVKSNSDSSLFCPNKAPGLADCWGEEFESLYTRYKKEG-----RAKRSLSGQKLW 55

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +L    ETG+    F    + +S QQ++G +  SNLC
Sbjct: 56  FAILETQMETGN----FLRCEDRKSNQQNLGTIKCSNLC 90


>gi|326791111|ref|YP_004308932.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541875|gb|ADZ83734.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 706

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G   +F+  KI  AI+KA            I  + I + +  +      + N 
Sbjct: 1   MEVVKRDGMSVAFNERKIYEAIIKAMK------YGSGIVDEGIAEKIANEIKGIFEKSNS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
              I  IE     V   L+++GH    + Y  YR  ++  R   +   S   +  
Sbjct: 55  KPTIFQIET---YVYLKLIENGHELTAKAYEGYRAIQAFKRETNTTDHSILSLIE 106


>gi|297587260|ref|ZP_06945905.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Finegoldia magna ATCC 53516]
 gi|297575241|gb|EFH93960.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Finegoldia magna ATCC 53516]
          Length = 707

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +  G              NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNSSTGIYEP----------NLAEKIANEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|313888571|ref|ZP_07822237.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845457|gb|EFR32852.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 707

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-ASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +VIKRNG   +FD  KI  AI KA  +  G     +++ +   I+ L           N 
Sbjct: 3   EVIKRNGEKVAFDRGKIVIAIEKAMHSSSGVYIEDQALEIAKEIEELA----------NS 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             L + I DI+ +V   L+Q+ +    R Y  Y+  +   R   +  +    +  +    
Sbjct: 53  KDLPLSIYDIEGEVYYRLIQNDNPATARAYESYKSVQQYKREQNTTDEDILGLLNETNED 112

Query: 149 MDD 151
           + D
Sbjct: 113 LMD 115


>gi|167957220|ref|ZP_02544294.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 97

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLSESDLETAL 202
           +K++  DGT  +F++ ++ M +  A  GL D  SK   + SE    ++DG++   L  ++
Sbjct: 6   IKVVKRDGTSEAFDANKINMELIAAAEGLPDQISKVAQISSEVQLTLFDGITTEQLNESI 65

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK-LRREV 232
           I ++   I+ +P++  + +R LL+  L++  
Sbjct: 66  INTALQNIKDDPDFDVIASRLLLKNYLQKRA 96



 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI---------IKNLTEQ 78
           ++V+KR+G   +FD +KI+  ++ A   +  + +  +    ++          + L E 
Sbjct: 5  NIKVVKRDGTSEAFDANKINMELIAAAEGLPDQISKVAQISSEVQLTLFDGITTEQLNES 64

Query: 79 TVTRLLQHNKSALIVHI 95
           +   LQ+ K      +
Sbjct: 65 IINTALQNIKDDPDFDV 81


>gi|325661467|ref|ZP_08150093.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472416|gb|EGC75628.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 723

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 110/344 (31%), Gaps = 50/344 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+     F+  KI+ AI+KA     G G         I   + E     + +  K
Sbjct: 1   MKVIKRDCTEVKFEKRKITNAILKAMK--NGSGI--------IKPKIAEAIADEIYEECK 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI------- 141
               V I  I++ V   L+        + Y  YR  R   R   + +             
Sbjct: 51  EKDEVDISYIEELVYDKLITKKQRLTAKAYEGYRCVREFQRENMNTTDEQISELLSGSSD 110

Query: 142 ---------APKLKIMMDDGTLISFNSKRLEM------IVEEACSGLQDVSSKIVLSETY 186
                     PKL     D      ++           IV+    G+         ++  
Sbjct: 111 YWNNENSNKNPKLLTTQRDYMAGILSTDITRRFLLPPEIVQAHDEGMIHFHDADYYAQNA 170

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
            +    ++  D+      +    +  +  +  +TA  +  ++   V ++ Y        H
Sbjct: 171 ISNCCLINLEDMLQN--GTCINKVTIDKPHRLITATTIATQIITAVTSSQYGGATITLTH 228

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL-KYERDFAFEYLGLQILYDRY 305
            +     + F  Y+E+     L ++  ++F    +  ++    + F ++   +       
Sbjct: 229 -LAPFVRDSFNIYMEKYKNRGLSYQQCLEFSREDIKKEISDSVQTFNYQVNSMTT----- 282

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
               NG     P   F+ V M L   E  KE+ A+     L   
Sbjct: 283 ---TNGQ---SP---FLSVFMYLGETEEYKEELAMLIEEFLKQR 317


>gi|317046759|ref|YP_004114407.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. At-9b]
 gi|316948376|gb|ADU67851.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. At-9b]
          Length = 712

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I+            + A+R+++V DI      Q    + Q   + 
Sbjct: 5   VIKRDGCKVPFDAQRIAS---------AVQAAARAVQVNDITW--CAQVAAEVEQQLVAR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I DIQ  VE +LM     ++ R Y+ YR +R   R  +     
Sbjct: 54  HEVDIRDIQCAVEETLMSGPWPQLARAYIEYRHDRDLAREQRGKLHH 100


>gi|315499996|ref|YP_004088799.1| ribonucleotide reductase large subunit [Asticcacaulis excentricus
           CB 48]
 gi|315418008|gb|ADU14648.1| ribonucleotide reductase large subunit [Asticcacaulis excentricus
           CB 48]
          Length = 922

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 3/195 (1%)

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           ++T +    ++N         FD +  A+        LD    +   T  +A +    HR
Sbjct: 299 DDTLIAPRAALNAYGFLKPTGFDIEGFAACAALWTVALDIESHLAFATTPEAAQRLAYHR 358

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            I L + G    L  L +   +    + A   M  +   ++ AS  L++    Y+ F   
Sbjct: 359 PIALTVAGLSETLMALSLSAQTEAGQDFAAALMAVLDAESVHASAVLSRHLTPYTGFAAE 418

Query: 715 LWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             D+          L      +L  +  +RL      +  K  G+R+     +     ++
Sbjct: 419 RDDRVSALSQKLYRLSGLKSADLKAHALTRL--QTALRLAKPTGLRHVQTTTLFDDPELS 476

Query: 774 NICGVSQSIDPSYQN 788
              GV+    P    
Sbjct: 477 LRLGVTLGDAPLTAL 491


>gi|290968608|ref|ZP_06560146.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781261|gb|EFD93851.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 716

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI  AI KA  +  G       + + I + +    V+       
Sbjct: 2   LEVIKRNGTRVVFDRNKIVVAIEKAMNSSSGVY--EPGQAEKIAEEIEHYAVSLRKD--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + I  I+D+V   L++  +    R Y  Y+  ++  R   +    
Sbjct: 57  ----MTIYGIEDKVYEFLLKYNNPATARAYENYKAIQAFKRQTNTTDSD 101


>gi|226331039|ref|ZP_03806557.1| hypothetical protein PROPEN_04969 [Proteus penneri ATCC 35198]
 gi|225201834|gb|EEG84188.1| hypothetical protein PROPEN_04969 [Proteus penneri ATCC 35198]
          Length = 86

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
           +  I     ++    +I++ +   + IDQ  SL L+  DE + + ++     AW  G+KT
Sbjct: 3   IANITKMRMKLGQKKIIDTYAEASQHIDQGLSLTLFFSDEATTRDINKAQIYAWRKGIKT 62

Query: 900 TYYLRSRSATSVEKSTLKGV 919
            YY+R R +     + +KG 
Sbjct: 63  LYYIRIRQSALA-GTEIKGC 81


>gi|167916607|ref|ZP_02503698.1| hypothetical protein Bpse112_39422 [Burkholderia pseudomallei 112]
          Length = 317

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 6/155 (3%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +  F                ++SCF+  +  P  L         AL E  +
Sbjct: 162 ARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 221

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
                  +G D++ +   GA     +  S GV   L   +       +   R+ A  A L
Sbjct: 222 ALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVL 281

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
              H D+  F   +        R   +  A    D
Sbjct: 282 RCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATD 316


>gi|182419956|ref|ZP_02951192.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237665650|ref|ZP_04525638.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376207|gb|EDT73792.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237658597|gb|EEP56149.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 705

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+  V  F+P KI  AI+K+              + +I +N+ ++    +     
Sbjct: 1   MLIIKRDKSVEDFNPDKIKNAILKSMK----------FGIGNINENIADEISINIYNVFV 50

Query: 89  SALI-VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +      +E +++ V   L+++    + + Y  YR  +   R     + +D  I   L  
Sbjct: 51  NEKTPPTVEQVENLVYYELVKNSFEGVAKAYEGYRAVQEFKRH---KNTTDEGIISLLNS 107

Query: 148 MMDDGTLISFNSK 160
             +D    + N  
Sbjct: 108 TNEDVLKENSNKD 120


>gi|938283|emb|CAA49151.1| ribonucleotide reductase [Saccharomyces cerevisiae]
          Length = 72

 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 40/68 (58%)

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D YG EFE  Y  
Sbjct: 2   IRKNHGKEEIRARDLLPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTR 61

Query: 525 YERQADRG 532
           YE++    
Sbjct: 62  YEKEGRGK 69


>gi|119774412|ref|YP_927152.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           amazonensis SB2B]
 gi|119766912|gb|ABL99482.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella
           amazonensis SB2B]
          Length = 705

 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD +++  A++ A  A   +    +  V  ++     Q            
Sbjct: 4   VIKRDGCRAAFDETRLRDAVIAAQGAAGVEDKDYAATVASVVAAEVAQR----------- 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             V I ++QD VE  LM   + ++ R Y+ YR +R   R A
Sbjct: 53  DEVAIHELQDAVENCLMSGPYKEVARHYIEYRHDRDVCREA 93


>gi|157781903|gb|ABV72277.1| NrdA [Azospirillum brasilense]
          Length = 108

 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI       A L KY  G G++++ +RG G  +    GKS G++ FLK+ +  A A+  G
Sbjct: 7   GIMDLWVREARLFKYGSGTGSNFSRLRGEGEKL-AGGGKSSGLMSFLKIGDRAAGAIKSG 65

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
              R+ A    ++  H D+E ++D + + G
Sbjct: 66  GTTRRAAKMVTVDMDHPDIEAYIDWKGDRG 95


>gi|260878201|ref|ZP_05890556.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
 gi|308093471|gb|EFO43166.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
          Length = 694

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 39  TSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDI 98
             F+  +I  A+  A    E K    +I   ++   +  Q         K    VHI +I
Sbjct: 1   APFNRDRIQAAVEAAA---ENKDKDVAIYALNVALAVELQL--------KDHDEVHIHEI 49

Query: 99  QDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           QD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 50  QDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIE 91


>gi|255657771|ref|ZP_05403180.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260849961|gb|EEX69968.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 727

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+KRNG +  FD SKIS AI+KA   V             I +++  Q         K
Sbjct: 2   VKVVKRNGSLADFDKSKISNAILKAMT-VGNT----------INESIASQIADDAEHQYK 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               V I DI+  V   L + G     + Y  YR  R   R A +  +  
Sbjct: 51  DKEKVSISDIETFVFNELCKYGQQMTAKAYEGYRSIREFQRKASNSIEKQ 100


>gi|170727389|ref|YP_001761415.1| anaerobic ribonucleoside triphosphate reductase [Shewanella woodyi
           ATCC 51908]
 gi|169812736|gb|ACA87320.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella woodyi
           ATCC 51908]
          Length = 705

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I               A+ S  + D       Q  T++     + 
Sbjct: 4   VIKRDGYRTPFDETRIRD---------AVAAAAISAGIDD--NGYATQVATKVADTVANM 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 53  AEVDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSSRLNRE 100


>gi|304396367|ref|ZP_07378248.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. aB]
 gi|304355876|gb|EFM20242.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. aB]
          Length = 712

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLLQHNK 88
           VIKR+G  T FD  +I +             A+++  V D+     + EQ   RL    +
Sbjct: 5   VIKRDGCRTGFDAQRIEQ---------AVAAAAQAAEVDDLAWCTQVAEQVALRLADRPE 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               V I +IQ  VE +LM   + ++ R Y+ YR +R   R  QS    
Sbjct: 56  ----VDIREIQCAVEETLMAGPYPQLARAYIEYRHDRDVARDRQSQLHH 100


>gi|127513377|ref|YP_001094574.1| anaerobic ribonucleoside triphosphate reductase [Shewanella loihica
           PV-4]
 gi|126638672|gb|ABO24315.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella
           loihica PV-4]
          Length = 705

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I               A+ S  + D+      +   ++ Q     
Sbjct: 4   VIKRDGYRTPFDETRIRD---------AVVAAASSAGIDDVA--YATEVALQVRQSVAEL 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I D+QD VE  LM+  + ++ R Y+ YR +R   R   S    +
Sbjct: 53  EQVDIHDLQDAVENQLMEGPYKQLARVYIEYRHDRDIHRELSSRLNRE 100


>gi|327439701|dbj|BAK16066.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 207

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 36/200 (18%)

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +   + GV+  ++P +   Y +S   G F  V + +V E              L  + G 
Sbjct: 2   STGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEY-------------LDANPGV 48

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG-KKLDFIY 889
             N      +L     ++ E+      +     Q WID + S  +   +  G +++  +Y
Sbjct: 49  DEN------NLPDWFKSSMELSAEAHADVQCIIQNWIDSSISKTVNAPKGYGVEQVQKVY 102

Query: 890 RQAWLMGLK--TTYYLRSRSAT-------------SVEKSTLKGVDGKL-NAVPVTDPNS 933
            + +  G K  T Y   SR                 +E   LK  + ++   V + D   
Sbjct: 103 ERLYRGGAKGGTVYVDGSRDTQVLTLKAEEANSDEQLEFEELKQSEDQVKRQVVLVDTIK 162

Query: 934 STHSLGIPSSCTSDTECEVC 953
                 +         C VC
Sbjct: 163 PLTDTDVTIGSEVGNTCPVC 182


>gi|66354484|gb|AAY44877.1| ribonucleotide reductase large subunit [Tortoise herpesvirus 2]
          Length = 125

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD L+ ++   G+ NS  +A+ PT + + I   S+   P + NLY K + +G+    N
Sbjct: 15  ERWDVLRPKIIEHGLYNSQFIALMPTVSSSQITESSEGFYPVFTNLYSKLSTNGETIKPN 74

Query: 804 SFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIP-DDLKKIHATAFE 850
             L+ EL    +     A +  L+ H   +      IP D +   + TAFE
Sbjct: 75  VLLLRELNSVFKGEEYVAALDKLEKHKWVVKEAFPDIPSDHVLSKYLTAFE 125


>gi|289423801|ref|ZP_06425596.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155840|gb|EFD04510.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           anaerobius 653-L]
          Length = 706

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD SKI  A+ KA            +   DI + +        L  ++
Sbjct: 1   MLVMKRDGSKVDFDRSKIRIAVEKAMK------NGSGLYHPDIAEAVARDCENYFLSLDE 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                 I  I+  V   L+   H +  R Y  YR  +   R   +   S
Sbjct: 55  E---PTIYKIEGYVYDRLIHYNHSETARAYEGYRAVQQFKRQVNTTDDS 100


>gi|323497288|ref|ZP_08102307.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sinaloensis
           DSM 21326]
 gi|323317645|gb|EGA70637.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sinaloensis
           DSM 21326]
          Length = 706

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAEHVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             V+I +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVNIAEIQTLVENELMQGPYKSLARSYIEYRHDRDMAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|260777713|ref|ZP_05886606.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605726|gb|EEX32011.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 706

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAEHVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMM 149
             VHI ++Q  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  + +
Sbjct: 54  DEVHITEVQTLVENELMQGPYKSLARSYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 150 ------DDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|324111308|gb|EGC05290.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 175

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 220 TARFLLEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
             R   +K R+  +     + +P   T    Q    +     + EG     +       D
Sbjct: 16  AGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQ----QRLNWLVNEGYYDENVLNRYSR-D 70

Query: 278 LVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQAFFMRVAMGLALKETE 334
            V       +   F F  +LG    Y  Y L   +G R  E        VA+ LA  +  
Sbjct: 71  FVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGD-- 128

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            E  A +  + + S  F  +TPT  N+    P    
Sbjct: 129 -ETLATQLTDEILSGRFQPATPTFLNAANWFPVFCC 163


>gi|60416873|emb|CAD71196.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 73

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+++D   +++  +  Q+ +DQ  S  L+  D  + + L+ I   A   G+KT YY R++
Sbjct: 2   AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 61

Query: 907 SATS 910
             T 
Sbjct: 62  DTTQ 65


>gi|445482|prf||1909271A ribonucleotide reductase mutant
          Length = 214

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+ R+ + G+ N+  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+ 
Sbjct: 97  LRVRIASTGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLME 156

Query: 809 ELKQ---RDLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861
            L++   R+      ++ L+    S+      +P         TAFE D   LI+  +
Sbjct: 157 TLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCA 214



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGAL-QENAMLAKYSGGLGNDWTPVR 408
            + +TP +  +G     L+SC+L   +P        A+  E A +    GG+G       
Sbjct: 1   IVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSFN 60

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              +        ++G++  LK  +    A+N   +R   VC  +  
Sbjct: 61  RTPS-----GDCTRGIMAVLKALDSMTAAINSDSERPTGVCLRVRI 101


>gi|253584288|ref|ZP_04861486.1| ribonucleoside-triphosphate reductase [Fusobacterium varium ATCC
           27725]
 gi|251834860|gb|EES63423.1| ribonucleoside-triphosphate reductase [Fusobacterium varium ATCC
           27725]
          Length = 748

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ ++VIKRNG + +F+  KI + + K           + ++  D +    E  +  +++
Sbjct: 1   MQKIEVIKRNGSIVTFNKEKIEKVLEK---------IDKEVKFIDKVS--IEHMMNDIVK 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
                  + +E IQD V  +L  +G  +  + +  YR +R++ R  ++++
Sbjct: 50  KINGNTRMSVEAIQDIVFYTLCTNGLFEQAKAFQTYRTQRAEQRLMEANT 99


>gi|293375208|ref|ZP_06621494.1| ATP cone domain protein [Turicibacter sanguinis PC909]
 gi|292646188|gb|EFF64212.1| ATP cone domain protein [Turicibacter sanguinis PC909]
          Length = 285

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD +KI +AI+KA            +  +++ + +  +        N +
Sbjct: 3   EVIKRDGSHVVFDENKIYQAILKAMK------FGSGVVDEELAQKIAHEINLIFDTLNTT 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
             I  IE     V   L+++GH    + Y  YR  +   R   +   S   +  
Sbjct: 57  PTIFQIET---FVYLKLIENGHELTAKAYEGYRAIQQFKRETNTTDDSILSLIE 107


>gi|325842286|ref|ZP_08167659.1| ATP cone domain protein [Turicibacter sp. HGF1]
 gi|325489659|gb|EGC92020.1| ATP cone domain protein [Turicibacter sp. HGF1]
          Length = 285

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD +KI +AI+KA            +  +++ + +  +        N +
Sbjct: 3   EVIKRDGSHVVFDENKIYQAILKAMK------FGSGVVDEELAQKIAHEINLIFDTLNTT 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
             I  IE     V   L+++GH    + Y  YR  +   R   +   S   +  
Sbjct: 57  PTIFQIET---FVYLKLIENGHELTAKAYEGYRAIQQFKRETNTTDDSILSLIE 107


>gi|224066617|ref|XP_002302165.1| predicted protein [Populus trichocarpa]
 gi|222843891|gb|EEE81438.1| predicted protein [Populus trichocarpa]
          Length = 129

 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 56/162 (34%), Gaps = 59/162 (36%)

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
           P+   G+ I G +G S G +P L+V N T   + +   R                     
Sbjct: 5   PIFPTGSSIRGEDGASNGFVPTLRVFNHTDRYLIKEEGR--------------------- 43

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
               G + RR  D+  A WIPDLF++RV  +  W                          
Sbjct: 44  ----GKEERRAQDLFCALWIPDLFIERVRGDGSW-------------------------- 73

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                       + +SA  LW ++L    ETG P++ F D  
Sbjct: 74  --------KGQKKVVSARKLWFEILNSQTETGTPYMLFHDTV 107


>gi|85540868|gb|ABC70819.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540882|gb|ABC70826.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540884|gb|ABC70827.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           TS+  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TSQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN-IERIPDDL 841
             N  L+ +L    +       +  L+ H   +G     +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|329850491|ref|ZP_08265336.1| B12-dependent ribonucleoside diphosphate reductase [Asticcacaulis
           biprosthecum C19]
 gi|328840806|gb|EGF90377.1| B12-dependent ribonucleoside diphosphate reductase [Asticcacaulis
           biprosthecum C19]
          Length = 909

 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 7/263 (2%)

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+   F ++ F  +     I      LD    +            H  R + L L G
Sbjct: 297 AAINVARFFQDDGFQAEAFVDAITLWAWALDIEASVAFTGTYTDSLKLHAERPVALTLAG 356

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              AL  L +  +   A + A      +   A+ AS  LAQ    + SFK          
Sbjct: 357 LTDALMSLGLSLSDSAAGDYASHLFALLEASAVHASAVLAQRLSPHDSFKADKPAAIDRL 416

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
              +  +  ++    +   S        K  K  G+RN    A+     +A   G +   
Sbjct: 417 SSKLYQITAMKGHGDLKGRSLELIQSGLKLAKLTGLRNVQSTALFADDELALRLGATLG- 475

Query: 783 DPSYQNLYVKSNMSGDF----TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
                   V+  + GD     TV+ + ++  L+      + +   L  H           
Sbjct: 476 --DQAIREVRGVIEGDDGTFVTVLKAPVIKGLQALAADWDEVRGHLLGHRSLYDAPHINT 533

Query: 839 DDLKKIHATAFEIDPMWLIESAS 861
             LK    + FE+  +  +   +
Sbjct: 534 ASLKSKGLSEFEVSQLQDVLMTA 556


>gi|60416876|emb|CAD71198.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|85540870|gb|ABC70820.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    
Sbjct: 8   QDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKP 67

Query: 803 NSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN-IERIPDDL 841
           N  L+ +L    +       +  L+ H   +G     +P D 
Sbjct: 68  NVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPKDH 109


>gi|57867411|ref|YP_189076.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638069|gb|AAW54857.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 87

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P+ +     TAF+I    +I  A+  QKWIDQ  S  L+++ E    KL  +Y  A   G
Sbjct: 6   PETMWFYSPTAFDIPQEHIINVAAVAQKWIDQGVSTILFVNSEIETNKLARLYAYAHDRG 65

Query: 897 LKTTYYLRSRSATSVEKST 915
           LK+ YY R++  +  E ++
Sbjct: 66  LKSLYYTRNKLISIAECTS 84


>gi|85540880|gb|ABC70825.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    
Sbjct: 8   QDRWSALRPKIIKYGLCNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKP 67

Query: 803 NSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN-IERIPDDL 841
           N  L+ +L    +       +  L+ H   +G     +P D 
Sbjct: 68  NVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPKDH 109


>gi|833145|emb|CAA24929.1| unnamed protein product [Human herpesvirus 2]
          Length = 109

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQA 892
           P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E +   L       +   A
Sbjct: 14  PAHPLRRFKTAFDYDQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 73

Query: 893 WLMGLKT-TYYLRSRSATS 910
           +  GLKT  YY + R AT+
Sbjct: 74  YKRGLKTGMYYCKVRKATN 92


>gi|257469813|ref|ZP_05633905.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064043|ref|ZP_07928528.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689719|gb|EFS26554.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
          Length = 748

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++VIKRNG + +F+  KI + + K                +  IK + +  V ++  
Sbjct: 1   MHKIEVIKRNGSIVTFNKEKIEKVLEK-------IDKEVKFIDKVTIKQMMDDIVIKING 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           H +    + +E IQD V  +L  +G  +  + +  YR +R++ R  +++
Sbjct: 54  HTR----MSVEAIQDIVFYTLCTNGLFEQAKAFQTYRTQRAEQRLKEAN 98


>gi|23005511|ref|ZP_00048288.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 96

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRL 83
               ++V+KR+G    FD ++I  A+ KAF  V G   A+   RV +++  +  +   R 
Sbjct: 14  TTATLEVLKRDGRRRPFDDARIRAAVTKAFAEVHGDLTATHRRRVAEVVDRVDAEIAARF 73

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQ 108
                    V I +IQ  VE  L+ 
Sbjct: 74  ------DATVKIYEIQGVVEHVLLD 92


>gi|327396279|dbj|BAK13701.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Pantoea
           ananatis AJ13355]
          Length = 712

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+        AV+    + ++        + ++  T+L    +  
Sbjct: 5   VVKRDGCRVGFDSQRIA-------AAVKAAARAANVEDARWCDTVADRVSTQLAHRQE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I DIQ  VE +LM   + ++ R Y+ YR +R   R  +SH   
Sbjct: 56  --VDIGDIQYAVEETLMAGPYPQLARTYIEYRHDRDVERERRSHLHH 100


>gi|85540872|gb|ABC70821.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540874|gb|ABC70822.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540878|gb|ABC70824.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    
Sbjct: 8   QDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKP 67

Query: 803 NSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN-IERIPDDL 841
           N  L+ +L    +       +  L+ H   +G     +P D 
Sbjct: 68  NVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|85540876|gb|ABC70823.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    
Sbjct: 8   QDRWSALRPKIVKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKP 67

Query: 803 NSFLVNELKQ--RDLWDEAMISDLKYHDGSIGN-IERIPDDL 841
           N  L+ +L    +       +  L+ H   +G     +P D 
Sbjct: 68  NVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|227523223|ref|ZP_03953272.1| ribonucleoside triphosphate reductase [Lactobacillus hilgardii ATCC
           8290]
 gi|227089610|gb|EEI24922.1| ribonucleoside triphosphate reductase [Lactobacillus hilgardii ATCC
           8290]
          Length = 749

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 80/515 (15%), Positives = 164/515 (31%), Gaps = 93/515 (18%)

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K    L  D + +R  GA I G  G + G +P +++  D    +N   +R+ +     + 
Sbjct: 253 KNQQNLVLDMSDIRPKGAKIKGFGGTASGPMPLIEMLFDINGVLNNRARRRLSSVDMTDI 312

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            +      +  +     + RR+ ++   +   + F+          L+     S+     
Sbjct: 313 GN------MIGKTVVAGNVRRSAELALGSADDEDFITMKQDKEK--LYHHRWASNNSVAV 364

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--- 571
             +F                           +  +   +   G P I   +         
Sbjct: 365 DSQFSN-------------------------YGPIADSIRHNGEPGIVNLELSKNYGRKI 399

Query: 572 ---PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
               +     V  +N C EI+L++       CNL  +    + A+ Q     L       
Sbjct: 400 DGIQKDIDPNVEGTNPCGEISLSNGEP----CNLFEV--FPYVASQQ--NWDLDEAFTLG 451

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R    V   + +  E ++K+ + +R IG+ + G Q  +             E+ +    
Sbjct: 452 TRFSKRV-TFSPYDWEVSRKAINKNRRIGISMSGIQDWILS-----------ELGNRV-- 497

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            ++ +        A++     + K  ++DQ    ID +  L +   +   + +  L    
Sbjct: 498 -VTGYQD------AKDPETGETIKKPIYDQ--RAIDKVDGLYKAVVKADKDYSDEL---- 544

Query: 749 LKKRVKTIGMRNS-NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                   G   S     + P+ T+A + GVS+ +   Y    ++     D       L+
Sbjct: 545 --------GCNTSIKHTTVKPSGTVAKLAGVSEGMHFHYAPYLIQRIRFQDS----DPLL 592

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIE-RIPDDLKKIHATAFEIDPMWLIESASRRQ-K 865
             LK      E    D+   +  +     R      K  A+A  +       + +  Q  
Sbjct: 593 PALKACGYHVEK---DIYSKNTMVAEFPIRAAHADSKKFASAGNVSIAEQFATQAFLQTY 649

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           W D A S  +      G ++  +    +    K+T
Sbjct: 650 WSDNAVSCTVTFQPEEGDQIAPL-MHQYRFTTKST 683


>gi|60416866|emb|CAD71192.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+  AYL  +H D+ EFLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITEFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|291616027|ref|YP_003518769.1| NrdD [Pantoea ananatis LMG 20103]
 gi|291151057|gb|ADD75641.1| NrdD [Pantoea ananatis LMG 20103]
          Length = 712

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+        AV+    + ++        + ++  T+L    +  
Sbjct: 5   VVKRDGCRVGFDSQRIA-------AAVKAAARAANVEDARWCDTVADRVSTQLAHRQE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V I DIQ  VE +LM   + ++ R Y+ YR +R   R  +SH   
Sbjct: 56  --VDIGDIQYTVEETLMAGPYPQLARTYIEYRHDRDVERERRSHLHH 100


>gi|226331036|ref|ZP_03806554.1| hypothetical protein PROPEN_04966 [Proteus penneri ATCC 35198]
 gi|225201831|gb|EEG84185.1| hypothetical protein PROPEN_04966 [Proteus penneri ATCC 35198]
          Length = 165

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY----------PEYFCRYIEEGV 264
           +Y  + A   +  L  E     + K + ATHH  +              E     +++  
Sbjct: 16  DYHALNA---MLNLYDEQGNIQFDKDKLATHHFFRQHVNQNTVFFHDLKEKLEFLVQQHY 72

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE-YLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
               + E   +F  +       Y + F F+ +LG    Y  Y L   +G R    + +  
Sbjct: 73  YEAQVLE-QYEFAFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGERY--LERYED 129

Query: 323 R---VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           R   VA+ LA  +T+    A+   + + S  F  +TPT 
Sbjct: 130 RVCMVALTLAQGDTD---LAIHLVDEIISGRFQPATPTF 165


>gi|194172966|ref|YP_002003610.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia phage
           rv5]
 gi|114796004|gb|ABI79178.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia phage
           rv5]
          Length = 707

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    ++  K    ++KA  +   +          I   + E     L     
Sbjct: 1   MKVVKRDGREEFYNGIK----VIKAAESALLESGHTEEEAYRIACAVNEVVANNL---PT 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + +++I   VE +LM  G     REY+ YR+ R + R A     +D
Sbjct: 54  DQCTISVKNIHILVEDALMDMGLKCAAREYIQYRQTRDNNREAGGKLLAD 103


>gi|313636849|gb|EFS02470.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL S4-171]
          Length = 100

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
                 A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  AW  GLKTT
Sbjct: 23  PYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTT 82

Query: 901 YYLRSRSATSVE 912
           YY+RS      E
Sbjct: 83  YYVRSNDIDVEE 94


>gi|293380785|ref|ZP_06626830.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
 gi|290922649|gb|EFD99606.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
          Length = 141

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 29/141 (20%)

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P
Sbjct: 28  KTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQP 87

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               +  +         V ++ +N+                             D+ +  
Sbjct: 88  VVAPVETRKEADLGRIYVPAYKINK-----------------------------DNYEYY 118

Query: 845 HATAFEIDPMWLIESASRRQK 865
              A+E+ P  +I+  +  QK
Sbjct: 119 EKGAYEVGPNAIIDITAAAQK 139


>gi|296273197|ref|YP_003655828.1| anaerobic ribonucleoside-triphosphate reductase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097371|gb|ADG93321.1| anaerobic ribonucleoside-triphosphate reductase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 704

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+     +   KI  AI KAF + +                  E+    ++      
Sbjct: 5   IFKRDKEKEVYQSYKIKDAIKKAFKSEQINYD--------------ERVFFNVVNKLGLI 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             + +EDIQD +E  L    + ++ + +++YR      R        D 
Sbjct: 51  EELFVEDIQDIIEKELYNFKYFEVMKSFMVYRHTHKLQREHVLGLSEDT 99


>gi|328480223|gb|EGF49146.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 206

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 28/175 (16%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY--LGLQILYDRYF---- 306
            E    ++ E V    +  + +   L YL     YE DF  +Y    L+ L +++     
Sbjct: 34  KEALQAFLTENVAPNTMKFASLQERLKYLVEHHYYEADFLKKYQPAFLEKL-NQFLTAQH 92

Query: 307 -----------------LHINGSRIEMPQAFFMRV-AMGLALKETEKEKRAVEFYNLLSS 348
                            L  +    +  + +  RV A  L   +   E  AV+  + +  
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDG-TQYLEDYKDRVFANALFFAD-GNEDLAVDLADEMIH 150

Query: 349 FHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +  +TP+  N+G  R  +L SCFL  + DD+  I  A+     L++  GG+G 
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGL 205


>gi|261885165|ref|ZP_06009204.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 74

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 857 IESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           I+    RQKWIDQ QSLN+++  D+ SG+ L  IY  AW +G+K+TYYLRS S  S
Sbjct: 1   IKPELVRQKWIDQGQSLNIFMRLDKASGRYLSEIYTLAWELGVKSTYYLRSESPDS 56


>gi|213027724|ref|ZP_03342171.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 156

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 18/157 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKAT----------HHEMQCLYPEYFCRYIEEGV 264
           +Y  + A   +  L  +     + K Q+A           H        E     + EG 
Sbjct: 6   DYHALNA---MLNLYDKAGHIQFDKDQQAIDAFFAAHVRPHSVKFASQHERLETLVREGY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
               +     D   V+   +  +   F F  +LG    Y  Y L   +G R    + F  
Sbjct: 63  YDDAVLA-RYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEHFED 119

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           RV M         E  A +  + + S  F  +TPT  
Sbjct: 120 RVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFL 156


>gi|119944511|ref|YP_942191.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas
           ingrahamii 37]
 gi|119863115|gb|ABM02592.1| anaerobic ribonucleoside-triphosphate reductase [Psychromonas
           ingrahamii 37]
          Length = 704

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F    I+ A+     AVE  G  +         NL  +   ++      A
Sbjct: 5   VIKRDGAKAVFKSVFIANAV---NAAVEQSGVQKP--------NLGSEISKKVEYLLADA 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V I+ IQ  VE  LM      + R Y+ YR +R   R  +S
Sbjct: 54  KEVSIQAIQHMVESELMDRD-PSVARAYIEYRHDRDIEREKKS 95


>gi|213420919|ref|ZP_03353985.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 66

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%)

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
                   G+G +   +R LG+ I G      G IPF K       + +QGG R GA   
Sbjct: 1   MKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATL 60

Query: 451 YLETWH 456
           +   WH
Sbjct: 61  FYPMWH 66


>gi|66391367|ref|YP_238600.1| ORF118 [Staphylococcus phage Twort]
 gi|62637297|gb|AAX92408.1| ORF118 [Staphylococcus phage Twort]
          Length = 108

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA+++D   +I +++  QK +DQA S  LY++ E    KL  +Y  AW  GLK+ YY R
Sbjct: 35  ETAYKLDNKRIINTSAVIQKHVDQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTR 94

Query: 905 SRSATSVEKST 915
           S++   +E  +
Sbjct: 95  SQTLKVIECES 105


>gi|325479489|gb|EGC82585.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 706

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    F   KI  AI K+  +  G            + N  E+    +   +K
Sbjct: 2   LRVIKRNGLKDQFYKYKIVNAIEKSMNSPSGVF----------VHNQAEEIAREIENESK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I DI+D+V   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 52  DLEEISIYDIEDKVYYKLIERKNPATARAYESYKSVQAYKREQNTSDNDILGLLNQTNID 111

Query: 149 MDD 151
           + D
Sbjct: 112 VMD 114


>gi|289568498|ref|ZP_06448725.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289542252|gb|EFD45900.1| predicted protein [Mycobacterium tuberculosis T17]
          Length = 114

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYL 903
           TA EI P W +      Q+ ++ A S  + L    +   +  IY  AW   +K  T Y  
Sbjct: 20  TAAEIAPQWHVRMQGAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRY 79

Query: 904 RSRSATSVEKSTLK 917
            SR    +  +  K
Sbjct: 80  GSREGQVLSYAAPK 93


>gi|15673894|ref|NP_268069.1| hypothetical protein L173045 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116512848|ref|YP_811755.1| ATP-cone domain-containing protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|125624940|ref|YP_001033423.1| ribonucleoside-diphosphate reductase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|281492525|ref|YP_003354505.1| hypothetical protein LLKF_2105 [Lactococcus lactis subsp. lactis
           KF147]
 gi|12724949|gb|AAK06010.1|AE006421_3 unknown protein [Lactococcus lactis subsp. lactis Il1403]
 gi|116108502|gb|ABJ73642.1| ATP-cone domain [Lactococcus lactis subsp. cremoris SK11]
 gi|124493748|emb|CAL98737.1| unnamed protein product [Lactococcus lactis subsp. cremoris MG1363]
 gi|281376189|gb|ADA65680.1| Hypothetical protein LLKF_2105 [Lactococcus lactis subsp. lactis
           KF147]
 gi|300071739|gb|ADJ61139.1| hypothetical protein LLNZ_11205 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|326407465|gb|ADZ64536.1| ribonucleoside-diphosphate reductase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 105

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG V  +D  +I  A+ KA  A+ GK   + +    I  N+T + V +++    S 
Sbjct: 10  VIKRNGHVVDWDSFRIQTAVFKA--AINGKYKDKPLHANMIANNVT-KVVEKVIAEL-SF 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             + IE IQ+QV   L       + R+++ Y+ +++  +  
Sbjct: 66  EKIEIETIQNQVIKQLNDFD-KDVARDFLAYKTKQNIEQRH 105


>gi|291561294|emb|CBL40093.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 708

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G +  FD  KI  A+ K+  A          +  +I+  +      R  +   
Sbjct: 1   MNVIKKDGTIEQFDGQKIVNAVSKS--AARAMIELDDTQYHEIVSKVMAIVTERFPEQ-- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               VH+ D+ + VE  L +    KI + Y  YR 
Sbjct: 57  ----VHVADMHNIVEQVLDEVN-PKIAKSYRDYRN 86


>gi|297600071|ref|NP_001048435.2| Os02g0804900 [Oryza sativa Japonica Group]
 gi|255671328|dbj|BAF10349.2| Os02g0804900 [Oryza sativa Japonica Group]
          Length = 78

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  
Sbjct: 2   RTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSK 51


>gi|313122842|ref|YP_004033101.1| ribonucleotide reductase, alpha subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279405|gb|ADQ60124.1| Ribonucleotide reductase, alpha subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 739

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 167/580 (28%), Gaps = 123/580 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + A       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKA--GGRLTAV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIIDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALATRYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +     +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQAYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     D       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPIKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           S  +   +  G +++ + RQ         Y   ++S + +      G   +    P+   
Sbjct: 648 SCTITFQDSEGDQVESLLRQ---------YRFITKSTSLLPYFG--GSLQQAPKEPIDKE 696

Query: 932 NSSTHSLGIPSSCT----------------SDTECE--VC 953
                S  I  +                    T+CE   C
Sbjct: 697 TYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|327197760|ref|YP_004301458.1| gp125 [Brochothrix phage A9]
 gi|299810360|gb|ADJ53159.1| gp125 [Brochothrix phage A9]
          Length = 213

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 20/192 (10%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V  R  LEK  +E +   + +           L  +    Y+ E         +    D 
Sbjct: 27  VDGRIQLEK-DKEAVRAYFLEHINPNTVYFTDLKEKM--DYLLENNYLDKEKVNKYTHDE 83

Query: 279 VYLANDLKYERDFAF-EYLGLQILYDRYFLHINGS-----RIEMPQAFFMRV--AMGLAL 330
           V       +   F F  ++G    + +Y L  N       R E  Q     V  AM  A 
Sbjct: 84  VKELYKQAHAYKFRFQTFMGAHKFFVQYSLKTNDGGRYLGRFEDHQ-----VWQAMYFAD 138

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQE 389
            + E    A +F +LL    ++ +TPT+ N+      ++ SC+L  V DD+  I  A+  
Sbjct: 139 GDFE---LASKFVDLLIKQEYVPATPTMMNALRARAGEMVSCYLIDVNDDMLSISRAVNS 195

Query: 390 NAMLAKYSGGLG 401
           +  L++  GG+G
Sbjct: 196 SLQLSRLGGGVG 207


>gi|261883922|ref|ZP_06007961.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 160

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
            +L +   TA E+ P    +     Q+W+D + S  +      + ++++ +Y + +  G 
Sbjct: 8   QNLPEWFVTAMELAPEAHADVQCIIQRWVDSSISKTVNAPRGYTVEQVEKVYERLYKGGA 67

Query: 898 K--TTYYLRSRSATSV----------EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           K  T Y   SR +  +          E++ ++    +   V + +      S  +     
Sbjct: 68  KGGTVYVDGSRDSQVLTLKAEENSLEEQTDIQDKVVEKRPVVLIETIQDLRSTNVTIGSE 127

Query: 946 SDTECEVC 953
               C VC
Sbjct: 128 VGNTCPVC 135


>gi|327197765|ref|YP_004301463.1| gp130 [Brochothrix phage A9]
 gi|299810365|gb|ADJ53164.1| gp130 [Brochothrix phage A9]
          Length = 163

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 46/176 (26%)

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           + +++ ++  G+  S    I    +I  +   S SI P  Q +  +       T   +  
Sbjct: 2   ESIEQFIRERGLC-SEQSRIHRNGSIGYVAEASPSIQPIIQRVEERQEKKTGKTYYPA-- 58

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                        ++ D     + +A+++  + +I+  +   K 
Sbjct: 59  ----------------------------PKLSDRTMPYYRSAYDMSMLDMIDVYAEATKH 90

Query: 867 IDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +DQ  S+++Y                +E + + L  +   A   G+K+ YY RS S
Sbjct: 91  VDQGISMSVYFAKHIKAGLYPWKTGDNEYNTRDLSLVRSYAHAKGIKSMYYTRSYS 146


>gi|325124916|gb|ADY84246.1| Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 739

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 171/571 (29%), Gaps = 105/571 (18%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N   K  G + +       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDINEVLN--NKTGGRLTSV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +   + +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQDYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     +       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQNS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPVKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTY---YLRSRSATSVEKSTLKGVDGKLNAVPV 928
           S  +   +  G +++ + RQ +   +K+T    Y    S     K  +     +  +  +
Sbjct: 648 SCTITFQDSEGDQVESLLRQ-YRFIIKSTSLLPYFG-GSLQQAPKEPIDKETYEKRSQEI 705

Query: 929 TDPNSST----HSLGIPSSCTSDTECE--VC 953
           T          +S          T+CE   C
Sbjct: 706 TGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|308869|gb|AAA03078.1| ribonucleoside triphosphate reductase [Lactobacillus leichmannii]
          Length = 739

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 168/580 (28%), Gaps = 123/580 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + A       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKA--GGRLTAV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +   + +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQDYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     D       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPIKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           S  +   +  G +++ + RQ         Y   ++S + +      G   +    P+   
Sbjct: 648 SCTITFQDSEGDQVESLLRQ---------YRFITKSTSLLPYFG--GSLQQAPKEPIDKE 696

Query: 932 NSSTHSLGIPSSCT----------------SDTECE--VC 953
                S  I  +                    T+CE   C
Sbjct: 697 TYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|34925177|sp|Q59490|RTPR_LACLE RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|20664248|pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 gi|20664249|pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 gi|20664250|pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
 gi|20664251|pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
           Ribonucleotide Reductase
          Length = 739

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 168/580 (28%), Gaps = 123/580 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + A       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKA--GGRLTAV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +   + +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQDYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     D       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPIKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           S  +   +  G +++ + RQ         Y   ++S + +      G   +    P+   
Sbjct: 648 SCTITFQDSEGDQVESLLRQ---------YRFITKSTSLLPYFG--GSLQQAPKEPIDKE 696

Query: 932 NSSTHSLGIPSSCT----------------SDTECE--VC 953
                S  I  +                    T+CE   C
Sbjct: 697 TYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|188532516|ref|YP_001906313.1| anaerobic ribonucleoside triphosphate reductase [Erwinia
           tasmaniensis Et1/99]
 gi|188027558|emb|CAO95405.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia
           tasmaniensis Et1/99]
          Length = 712

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G    FDP+          +    + A+++  + D   +      +++     
Sbjct: 3   TQVIKRDGCKVVFDPA---------RIEAAIRAAAKAANIDD--DDYCTSAASQISAALG 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +   V I ++Q  VE  LM   + ++ R Y+ YR +R   R  Q    S+
Sbjct: 52  NRQQVDINEVQQAVENLLMAGRYPRLARRYIEYRHDRDVARERQGRLNSE 101


>gi|300811924|ref|ZP_07092385.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497121|gb|EFK32182.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 739

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 167/580 (28%), Gaps = 123/580 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + A       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKA--GGRLTAV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWFLTRLGNRVVTGFKDDFDPETHEAIK--- 506

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +     +  L  +E  K   
Sbjct: 507 -------------APVYDK-------RAIKMVDQLYKAVVKADQAYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     D       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPIKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           S  +   +  G +++ + RQ         Y   ++S + +      G   +    P+   
Sbjct: 648 SCTITFQDSEGDQVESLLRQ---------YRFITKSTSLLPYFG--GSLQQAPKEPIDKE 696

Query: 932 NSSTHSLGIPSSCT----------------SDTECE--VC 953
                S  I  +                    T+CE   C
Sbjct: 697 TYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|213421566|ref|ZP_03354632.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 123

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 839 DDLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYR 890
           + LK  +   +E+      ++     QK+IDQ+ S N   D    PSGK    +L     
Sbjct: 22  EHLKDAYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLL 81

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTL 916
            A+  G+KT YY  +R      +  L
Sbjct: 82  TAYKFGVKTLYYQNTRDGAEDAQDDL 107


>gi|116513297|ref|YP_812203.1| ribonucleotide reductase, alpha subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275933|sp|Q04CQ7|RTPR_LACDB RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|116092612|gb|ABJ57765.1| Ribonucleotide reductase, alpha subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 739

 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 91/571 (15%), Positives = 170/571 (29%), Gaps = 105/571 (18%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + +       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDINEVLNNKA--GGRLTSV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +   + +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQDYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     +       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQNS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPVKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTY---YLRSRSATSVEKSTLKGVDGKLNAVPV 928
           S  +   +  G +++ + RQ +   +K+T    Y    S     K  +     +  +  +
Sbjct: 648 SCTITFQDSEGDQVESLLRQ-YRFIIKSTSLLPYFG-GSLQQAPKEPIDKETYEKRSQEI 705

Query: 929 TDPNSST----HSLGIPSSCTSDTECE--VC 953
           T          +S          T+CE   C
Sbjct: 706 TGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|104773319|ref|YP_618299.1| ribonucleoside-triphosphate reductase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123077170|sp|Q1G7W2|RTPR_LACDA RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|103422400|emb|CAI96937.1| Ribonucleoside-triphosphate reductase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 739

 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 91/571 (15%), Positives = 170/571 (29%), Gaps = 105/571 (18%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + +       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDINEVLNNKA--GGRLTSV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +   + +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQDYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     +       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQNS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPVKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTY---YLRSRSATSVEKSTLKGVDGKLNAVPV 928
           S  +   +  G +++ + RQ +   +K+T    Y    S     K  +     +  +  +
Sbjct: 648 SCTITFQDSEGDQVESLLRQ-YRFIIKSTSLLPYFG-GSLQQAPKEPIDKETYEKRSQEI 705

Query: 929 TDPNSST----HSLGIPSSCTSDTECE--VC 953
           T          +S          T+CE   C
Sbjct: 706 TGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|325685198|gb|EGD27320.1| adenosylcobalamin-dependent ribonucleoside-triphosphate reductase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 739

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 167/580 (28%), Gaps = 123/580 (21%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D + +R  GA IHG  G + G +P + +  D    +N      G + A       D  +
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKA--GGRLTAV------DAAD 303

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
             +L                A    D        +  +     D+   +H  +     +A
Sbjct: 304 ICNLIGKAVVAGNVRRSAELALGSND--------DQDFISMKQDQEKLMHHRWASNNSVA 355

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD------PCNIRSPQQH 575
            +                 SA + ++ +   + E G P I   D                
Sbjct: 356 VD-----------------SAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGI 398

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
            G V  +N C EI+L +       CNL  +         +     L      A R    V
Sbjct: 399 DGDVEGTNPCGEISLANGEP----CNLFEV----FPLIAEEQGWDLQEVFALAARYAKRV 450

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISFHA 694
              + +  E +++    +R IG+ + G Q   L  L     +    +   E+ E I    
Sbjct: 451 -TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKV-- 507

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
                           +           I  +  L +   +     +  L  +E  K   
Sbjct: 508 --------------PVYDK-------RAIKMVDQLYKAVVKADQAYSKTLGCNESIK--- 543

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
                      + P+ T+A + G S+ +   Y    ++     D       L+  LK   
Sbjct: 544 --------HTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDS----DPLLPALKACG 591

Query: 815 LWDEAMISDLKYHDGSIGNIE--RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQ 871
              EA   D+   + +        +  D     A+A  +       + +  Q  W D A 
Sbjct: 592 YRTEA---DIYTENTTCVEFPIKAVGADNPN-FASAGTVSIAEQFATQAFLQTYWSDNAV 647

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           S  +   +  G +++ + RQ         Y   ++S + +      G   +    P+   
Sbjct: 648 SCTITFQDSEGDQVESLLRQ---------YRFITKSTSLLPYFG--GSLQQAPKEPIDKE 696

Query: 932 NSSTHSLGIPSSCT----------------SDTECE--VC 953
                S  I  +                    T+CE   C
Sbjct: 697 TYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGAC 736


>gi|153838732|ref|ZP_01991399.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
 gi|149747857|gb|EDM58737.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
          Length = 123

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 840 DLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYR 890
           +LK  +   + I      +      QK++DQA S N   D PS         KKL     
Sbjct: 24  ELKNNYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLL 82

Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913
            A+  G+KT YY  +R     ++
Sbjct: 83  TAYKFGVKTLYYHNTRDGAKDDQ 105


>gi|153840630|ref|ZP_01993297.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
 gi|149745707|gb|EDM56837.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
          Length = 125

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 840 DLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPS--------GKKLDFIYR 890
           +LK  +   + I      +      QK++DQA S N   D PS         KKL     
Sbjct: 26  ELKNNYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYD-PSRYETGKVPMKKLLQDLL 84

Query: 891 QAWLMGLKTTYYLRSRSATSVEK 913
            A+  G+KT YY  +R     ++
Sbjct: 85  TAYKFGVKTLYYHNTRDGAKDDQ 107


>gi|289577907|ref|YP_003476534.1| ATP-cone domain protein [Thermoanaerobacter italicus Ab9]
 gi|297544184|ref|YP_003676486.1| ATP-cone domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527620|gb|ADD01972.1| ATP-cone domain protein [Thermoanaerobacter italicus Ab9]
 gi|296841959|gb|ADH60475.1| ATP-cone domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 85

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD  KI R+I  A  + +      +  + +I +++ +           
Sbjct: 1   MKVIKRDGRLQEFDLDKIVRSIGAA--SDDAGKPLNTSDLHNIARDIEKSI------KKL 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
               +  ++I+  V  +L ++G   + + Y+ +
Sbjct: 53  GKEQISFDEIRTIVIDTLEKNGFKDVAKAYMNF 85


>gi|310005708|gb|ADP00095.1| ribonucleotide reductase domain-containing protein [Cyanophage
           NATL1A-7]
          Length = 459

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G   I  + +  +   ++  G     + +R  G H +G    + G 
Sbjct: 24  PVSCTVFVVEDSMEGKDGIEASWRFVSHALRHGAGCAVHLSKLRPKG-HDNGRGLTASGP 82

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + F K+ +     + +GG  + GAV  +L+  H D+ EF+ L ++     +R  D++  +
Sbjct: 83  VSFAKIYSTLNETLRRGGVYKNGAVVVHLDISHPDILEFVQLPRSEAPWIKRCVDLSPGD 142

Query: 484 W 484
           W
Sbjct: 143 W 143


>gi|225164166|ref|ZP_03726444.1| Ribonucleoside-triphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224801233|gb|EEG19551.1| Ribonucleoside-triphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 697

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 149/512 (29%), Gaps = 97/512 (18%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  + D + G   A+ E  + A     +  D++ +R  GA +  + GK+ G  P  +   
Sbjct: 180 IHVIEDTIEGWGDAIHELMLAAVEGRLVEFDYSLIRPAGAPLRTSGGKAPGPEPLYRSLV 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                ++    RK           I+  + L                        +    
Sbjct: 240 HIKRILHAAEGRK--------LKTIEAYDILMWAAKA------------------VLSGG 273

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++A   LFS D+   ++   G  FE   EN +R A      + R  +    + ++   
Sbjct: 274 VRRSATICLFSADDEDMINAKTGDWFE---ENPQRTASNNSAVIVRSRATREEFDRLFEA 330

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI--TLNSSSEETAVCNLGSINLLAH 610
             + G P   F +              + +N C EI    + + +  A+  L S      
Sbjct: 331 QKQFGEPGFYFVENEE-----------YGANPCVEIGLHPSVTVDADAISRLRSYGYQGQ 379

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               Q                L  V   N  TI  A   +                L   
Sbjct: 380 LIEGQ---------------TLTGVQFCNLTTISSAAVDSPERFYQLCAHAALIGTLQAG 424

Query: 671 H--IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +  I Y SP +  I +   E +   +I                       G+     I L
Sbjct: 425 YSDIRYLSPVSRLITER--EALLGVSIC----------------------GILDRPEILL 460

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC-MAIAPTATIANICGVSQSIDPSYQ 787
             EV   LA    +    + +  R   IG+R +     + P  T + + G S  + P + 
Sbjct: 461 DREV---LARGAATVKAMNAIVAR--AIGIRPAARTTCVKPEGTASLLLGTSSGLHPHHS 515

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +   +     V             ++  M+    Y       +   P +       
Sbjct: 516 QRYFRRVQANVHDPVFRHFKK-------FNPHMVEPSIYDPNGRTEVITFPVEGPAFGVY 568

Query: 848 AFEIDPMWLIESASRRQK-WIDQAQSLNLYLD 878
             ++  +  +E     QK W+   +    +  
Sbjct: 569 REDVSALNHLEYIHLVQKAWVQAGRRHEKFSP 600


>gi|167038019|ref|YP_001665597.1| ATP-cone domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116431|ref|YP_004186590.1| ATP-cone domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856853|gb|ABY95261.1| ATP-cone domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929522|gb|ADV80207.1| ATP-cone domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 85

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD  KI R+I  A  + +      +  + +I +++ +           
Sbjct: 1   MKVIKRDGRLQEFDLDKIIRSIGAA--SDDAGKPLNTSDLHNIARDIEKSI------KKL 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
               +  ++I+  V  +L ++G   + + Y+ +
Sbjct: 53  GKEQISFDEIRTIVIDALEKNGFKDVAKAYMNF 85


>gi|213422935|ref|ZP_03355960.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 49

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 1   DWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 48


>gi|148724476|ref|YP_001285442.1| ribonucleotide reductase [Cyanophage Syn5]
 gi|145588121|gb|ABP87940.1| ribonucleotide reductase [Synechococcus phage Syn5]
          Length = 464

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 111/343 (32%), Gaps = 82/343 (23%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G   I  + +  +   + + G+    + +R  G   +G    + G 
Sbjct: 23  PVSCTVFVVDDSMEGPEGIERSWRFVSHALRNAAGVAVHLSKLRPRGEE-NGKGLVASGP 81

Query: 425 IPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + F ++ +     + +GG  + GA   +L+  H D+EEF+D  +      ++        
Sbjct: 82  VSFARIYSVLNETLRRGGTYKNGACVIHLDANHTDLEEFVDASRAELPWVKKC------- 134

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
                                              +I  E +    +  + K+ + I A 
Sbjct: 135 ----------------------------------IDITTEWWNDLTEPVQEKILKAIQAG 160

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +W                       +      G     N+C EI L S       C L 
Sbjct: 161 DIW---------------------LNKVKYDRKGNRIYGNVCLEIYLPSR----GTCLLQ 195

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            + L A    +         +   A+     V D   +   +        R +GLG++G 
Sbjct: 196 HVQLGACNVGDLRPAFIKGMSELVALHGRTGVGDTGEYLSPEVD------RQVGLGVLGL 249

Query: 664 QSALHLLHIPYAS-PEAVEIADESMEFISFHAISASVELAQER 705
            + L    + YA+  EA+E  +   +F    AI     LAQE 
Sbjct: 250 ANFLAYHGVSYAAFGEALEAVNLGFDFEQTPAI----VLAQEW 288


>gi|310005853|gb|ADP00238.1| ribonucleotide reductase domain-containing protein [Cyanophage
           Syn26]
          Length = 468

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK--SQ 422
             SC +  V D + G   I  + +  +   ++  G+    + +R  G   +       + 
Sbjct: 28  PVSCTIFVVEDSMEGPNGIEASWRFVSHALRFGAGVAVHLSKLRPAGTKTNKGPDTLVAS 87

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G + F K+ +     + +GG  R GA   +L+  H D+ +F+ +++      +R  D+  
Sbjct: 88  GPVSFAKIYSTLNEILRRGGTYRNGACVLHLDIDHTDIIDFVQVQRQELPWVKRCVDLTQ 147

Query: 482 ANWIP 486
           + W+ 
Sbjct: 148 SGWLN 152


>gi|114328401|ref|YP_745558.1| vitamin B12-dependent ribonucleotide reductase [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316575|gb|ABI62635.1| vitamin B12-dependent ribonucleotide reductase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 516

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 110/351 (31%), Gaps = 61/351 (17%)

Query: 605 INLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           INL A +   +  D   L   +  AV  L   +                 R + +   G 
Sbjct: 119 INLPAFYTRTDGLDVAALGQAVSDAVLALTLAVPSA--------------RRLAVTPTGL 164

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
            + L    + YAS EA + A     FI   A  AS  LA+      S  G      V   
Sbjct: 165 AALLDKAGLAYASQEAQDTARCLTAFIRACADHASATLAR------SLGGGEAASSVVSR 218

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS-QSI 782
           D    L        +   +R   +         G+R+    AI P   + ++ GV    I
Sbjct: 219 D----LPASCPLPGLAEAARQACETA----PLGGLRHRATTAILPPQIVESLLGVRISGI 270

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P +  L  +  +S           + L  R L  E  I+ L     S+      P  + 
Sbjct: 271 APGFSPLTSEGTLSESAQ-------DWLLARGLRAEDAIAALI-RGESVFPSADTPARIA 322

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
              A A  I  M   E+    +   D A      +     + L      A   G    Y 
Sbjct: 323 MHDAVAPFIHMM---EARPAAEPDKDAA---TTPIRSAQAEDLP-----ARRRG----YT 367

Query: 903 LR-SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
            R +    +V   T +  DG+L  + ++ P  S  + G+        EC  
Sbjct: 368 QRATVGGHTVFLRTGEYADGRLGEISISLPKDSPTARGLT-------ECLA 411


>gi|167957418|ref|ZP_02544492.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 78

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKW+DQA S N+YL+     +   IY +AW  GLKTTYYL  +     E++T+K      
Sbjct: 1   QKWVDQAISRNMYLETRDIDEYVKIYSEAWRRGLKTTYYLHVKPRHQSEQTTVKSDKSAK 60


>gi|322510781|gb|ADX06095.1| putative ribonucleoside-diphosphate reductase ATP-cone domain
           protein [Organic Lake phycodnavirus 1]
          Length = 97

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/96 (9%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +      +  ++   V +      L  +    ++ +    ++D +  S ++  L
Sbjct: 2   IHVLKRNSKKEVLSYDKILERVNKFIVKYNLN-IQGSGLVLKVIDQLHDNIKTSQIDELL 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
                ++     +Y+K+     +    +E   T+++
Sbjct: 61  AEQCASMGTIHYDYSKLAGYICISNHHKETKRTLFE 96


>gi|312170917|emb|CBX79176.1| K00527 ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 712

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G   +FD              +E    + +   +    +      +R+     +
Sbjct: 4   QVIKRDGCQVAFDQ-----------ARIEAAIRAAAKAAKIDDDDYCANAASRVSALLSA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I D+Q  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 53  RQRVEIADVQQAVENLLMSGRYPQLARRYMEYRHDRDVARERQGRLNRE 101


>gi|292900754|ref|YP_003540123.1| anaerobic ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC 49946]
 gi|291200602|emb|CBJ47733.1| anaerobic ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC 49946]
          Length = 711

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G   +FD              +E    + +   +    +      +R+     +
Sbjct: 4   QVIKRDGCQVAFDQ-----------ARIEAAIRAAAKAAKIDDDDYCANAASRVSALLSA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I D+Q  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 53  RQRVEIADVQQAVENLLMSGRYPQLARRYMEYRHDRDVARERQGRLNRE 101


>gi|150017380|ref|YP_001309634.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903845|gb|ABR34678.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium beijerinckii NCIMB 8052]
          Length = 697

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 89/281 (31%), Gaps = 42/281 (14%)

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +  D++ VR  G  +    G++ G   +    +  N     +  G  R            
Sbjct: 227 ITFDYSYVRPEGERLKRFGGRASGHKSLKRMFEKINKVCSNLVNGSLR--------SIDV 278

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D+   +     +G                 + +     +        +  S L+ +   
Sbjct: 279 LDIATIISENVVSG-----------GVRHSAMMIICDENDED----VINAKSKLYTIVNG 323

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            +    E   R+     +    K S   + +K+L  +   G P          R      
Sbjct: 324 NWIENSEVSHRKMSNNSVLYKEKPSLNKI-KKILESIKINGEPGFINGSEAMRRKR---- 378

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNV 635
                 N C EI LNS       CNL + NL +    +N  D DKL   I+ + RV   +
Sbjct: 379 -TFKGCNPCGEILLNSHQ----CCNLSTNNLASFVNEDNNLDIDKLEKIIKLSTRVAIRM 433

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             +D+      K        R +G+ L G    ++  ++ Y
Sbjct: 434 TLVDVELPDWNKIM---QNDRIVGISLTGMMDMVNRTNMTY 471


>gi|289810082|ref|ZP_06540711.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 98

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 845 HATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLDE---PSGK----KLDFIYRQAWLMG 896
           +   +E+      ++     QK+IDQ+ S N   D    PSGK    +L      A+  G
Sbjct: 3   YELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 62

Query: 897 LKTTYYLRSRSATSVEKSTL 916
           +KT YY  +R      +  L
Sbjct: 63  VKTLYYQNTRDGAEDAQDDL 82


>gi|52551157|gb|AAU84577.1| putative ribonucleotide reductase [uncultured organism BAC21E04]
          Length = 471

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 114/352 (32%), Gaps = 95/352 (26%)

Query: 346 LSSFHFMCSTPTLF-NSGTRHPQLSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLG 401
           +S+     +           +    SC +    D + G   I  + +  +   +Y  G+ 
Sbjct: 1   MSNKAIARTGRVQNWMDNPTNRLPVSCTIFKPTDSMEGPNGIEASWRFVSHALRYGAGVA 60

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG-----AVCAYLETWH 456
              + +R  G+  +G    + G + F K+ +     +N+  +R G     AV  +L+  H
Sbjct: 61  VHLSGIRSAGSD-NGRGLIASGPVSFGKIYS----CLNEQLRRGGIYKNGAVVLHLDLSH 115

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EF++  +N     +R  +                                      
Sbjct: 116 PDILEFIETPRNELPWAKRCIN-------------------------------------- 137

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
              I  E ++  ++  +  V   I+   +W  +  + +                   QH 
Sbjct: 138 ---ITQEMWDESSEEVKDAVLAGIARGDIW--LAKIRW------------------NQHG 174

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDN 634
             +++ N+C E+ L    E    C L  INL A   +   Q   D +   I        N
Sbjct: 175 RRIYA-NVCLEVFL----ESRGTCLLEHINLAACEVDEIPQAFVDGMTELIEL--HSNTN 227

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           V     +   +        R +GLG++G  + L L  + Y      E AD  
Sbjct: 228 VDSSGEYLAPEND------RQVGLGMLGLANLLALEGVTY-----KEFADAL 268


>gi|73912904|gb|AAZ91396.1| NrdA [Neisseria lactamica]
          Length = 84

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              ++     QK++DQA S N   D       + S K++      A+  G+KT YY  +R
Sbjct: 3   EGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYHNTR 62

Query: 907 SATSVEKSTLKG 918
                 ++ ++ 
Sbjct: 63  DGADDTQADIQD 74


>gi|330859935|emb|CBX70265.1| hypothetical protein YEW_LG48170 [Yersinia enterocolitica W22703]
          Length = 107

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 20/106 (18%)

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLL 608
           + F+D  N  +     G ++ SNLC+EI   +S  E               CNLGS+N+ 
Sbjct: 1   MMFEDTVNRAN--PIKGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIA 58

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653
                   D      +I TA+R L  V D+ N  ++   +K N   
Sbjct: 59  HI-----MDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQEF 99


>gi|218886910|ref|YP_002436231.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757864|gb|ACL08763.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 636

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            I   E +QD VE  LM+S  + + + Y++YRE R  +R  ++     +    
Sbjct: 9   EIPEQEQVQDTVEQVLMESRLYAVAKRYIIYRETRRTLREQKAAFLDISETID 61


>gi|61806420|ref|YP_214197.1| ribonucleotide reductase domain [Prochlorococcus phage P-SSP7]
 gi|61374345|gb|AAX44199.1| ribonucleotide reductase domain [Prochlorococcus phage P-SSP7]
 gi|265525457|gb|ACY76223.1| ribonucleotide reductase domain-containing protein [Prochlorococcus
           phage P-SSP7]
          Length = 468

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK--SQ 422
             SC +  V D + G   I  + +  +   ++  G+    + +R  G   +       + 
Sbjct: 28  PVSCTIFVVEDSMEGKDGIEASWRFVSHALRFGAGVAVHLSKLRPAGTRTNKGPDTLVAS 87

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G + F K+ +     + +GG  R GA   +L+  H D+ +F+ +++      +R  D+  
Sbjct: 88  GPVSFAKIYSTLNEILRRGGTYRNGACVLHLDINHPDIIDFVQVKRQELPWVKRCVDLTR 147

Query: 482 ANW 484
             W
Sbjct: 148 EQW 150


>gi|76664795|emb|CAJ17837.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 89

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%)

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL  +H D+E FL ++K   D+  R   ++    IPD  ++   +N     F P 
Sbjct: 2   GAGATYLNVFHADIENFLSIKKLNADEDVRVKTLSLGVIIPDKMIELARKNEVTYTFYPH 61

Query: 506 EVSDLHDLYGKEFEIAYENYE 526
                +     +  +  + + 
Sbjct: 62  TGFLEYKKNFADIAVDMDYWY 82


>gi|299471070|emb|CBN78929.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 57

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           + ++  DG        ++   + + C GL    V S  +  +  + +Y G++  +L
Sbjct: 1   MFVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTIEL 56


>gi|163804060|ref|ZP_02197860.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
 gi|159172129|gb|EDP57065.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
          Length = 540

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 1   VHIHEIQDLVENELMQGSYKALARSYIEYRHDRDIAREKQSALTREIE 48


>gi|149068637|gb|EDM18189.1| ribonucleotide reductase M1 (mapped), isoform CRA_a [Rattus
           norvegicus]
          Length = 56

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++   +
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTQTM 56


>gi|300813764|ref|ZP_07094075.1| hypothetical protein HMPREF9131_1513 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512129|gb|EFK39318.1| hypothetical protein HMPREF9131_1513 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 46

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
          + VIKRNG    FD  KI+ AI KA  +  G        
Sbjct: 2  LTVIKRNGTEVPFDKEKITIAIEKAMNSTTGVFVEDQAE 40


>gi|60416886|emb|CAD71204.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 55

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + +DQ  S  L+  D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 1   QHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTKDTTQ 47


>gi|239993884|ref|ZP_04714408.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 140

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 40/138 (28%)

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P    + +KS+  G    V         +       ++ D+  +DG +         
Sbjct: 1   GIEPPRGFISIKSSKDGVLKQVVPEY-----ETLRDQYELLWDIPSNDGYLQ-------- 47

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA-------- 892
                                  QK+IDQ  S N   D PS  + + +  +         
Sbjct: 48  ------------------LVGIMQKFIDQTISANTNYD-PSRYEGNKVPMKLLLKDLLTT 88

Query: 893 WLMGLKTTYYLRSRSATS 910
           + +G+KT YY  +R   S
Sbjct: 89  YKLGVKTLYYHNTRDGAS 106


>gi|152990561|ref|YP_001356283.1| hypothetical protein NIS_0814 [Nitratiruptor sp. SB155-2]
 gi|182676582|sp|A6Q367|RTPR_NITSB RecName: Full=Probable adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|151422422|dbj|BAF69926.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 650

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 96/643 (14%), Positives = 180/643 (27%), Gaps = 132/643 (20%)

Query: 291 FAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRV-----------AMGLAL--KETEKE 336
           F F  L     Y  Y  L  +G+  E      +RV           A+   L   E + +
Sbjct: 24  FGFGLLSEVTFYRSYSRLKEDGTN-EHWPDTVIRVTEGIFSIRKNHALNYHLPWDEEQAQ 82

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC---FLTTVPDDLYGIFGALQENAML 393
             A EF   +    ++     L+  GTR+         +     D       A +    +
Sbjct: 83  IFAKEFALSMLQLRWLPPGRGLWMMGTRYMYERGSAGLYNCAAVDTSNLAHAA-EWAMDM 141

Query: 394 AKYSGGLGND------WTPVRGLGAHIHGTNGKSQGVI--------------PFLKVAND 433
                G+G +       T        I+  +   +G +              PF +    
Sbjct: 142 LMVGAGVGFNTAWSGKATKPDKKHPKIYVIDDSKEGWVKSVRLLIQSYTDNGPFYRFDYS 201

Query: 434 TAVAVNQGGKRKGAVCAY---LETWHIDVEEFLDLRKNTGDDRRRTH---DMNTANWIPD 487
                    K  G +      L+  H  +E+ LD   +   D+ R       N    +  
Sbjct: 202 KIRPAGSPLKTFGGIAPGPEPLKRLHKKIEQILDDYLDKKIDKTRCVVDLFNNIGLCVVS 261

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
             ++R  +       +     D   L+ K++E   E  E         V   +       
Sbjct: 262 GNIRRSAE------IAIGRPGDKTFLHLKDYEKFPERKEYGWISNNSVVIENLDDFHYID 315

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV--GVVHSSNLCTEITLNSSSEETAVCNLGSI 605
            + +++   G P +   +          +       SN C EI L    E   +CNL  I
Sbjct: 316 AITSLIASNGEPGVLHLENMQKYGRFGEIVPDRAWLSNPCGEIAL----ESYELCNLSEI 371

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                F +   + +     I  A      V  +      +  +    +R IG+ + G   
Sbjct: 372 -----FISKCSNEEDFQKLIEYATFYASTVNLL-PTHRPETNEIIARNRRIGVSVSGVAD 425

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
           A+    +       ++   +  E +     + +  LA+E G   S K             
Sbjct: 426 AIEKFGL----ETIIKWLRKGYEKVR----TVNERLAKEAGIPVSLK------------- 464

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                                                   + P+ TI+ + G S  +   
Sbjct: 465 -------------------------------------VTCVKPSGTISILAGTSPGMHYP 487

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
                ++    G  +     L   L    L  E  I D   +  +       P  +K++ 
Sbjct: 488 LATYALRRIRIGKTSK----LAKLLIDSGLSFEEDIYDKNSYVFAFPIHYDNPRSIKEV- 542

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
               +I    ++     +++W D   S  +  D P+      +
Sbjct: 543 ----DI-YEQMLVLTMLQREWADNMVSNTIQFD-PTRYDAKDL 579


>gi|269104286|ref|ZP_06156982.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160926|gb|EEZ39423.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 674

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +L    +A  V I  IQ+ VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 9   VAEAVLAQFVNAEEVEIHAIQNAVETQLMTGPHKAVARAYIEYRHDRDISREKKSRLNNE 68


>gi|255284353|ref|ZP_05348908.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255265095|gb|EET58300.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 710

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           + VIK++G    F+  KI  A+ K A  A+              I+ L E    R  +  
Sbjct: 1   MYVIKKDGTEEEFNVEKIVVAVNKSAARALYKFTPQE-------IEELCEFATRRAQEMG 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           K    + I+++ + VE +L +     + + Y  YR 
Sbjct: 54  KEG--ITIQEMHNIVESALEKVS-PAVAKSYRDYRN 86


>gi|300119356|ref|ZP_07057021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cereus SJ1]
 gi|298723262|gb|EFI64039.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cereus SJ1]
          Length = 140

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           R     N +  + D F++ V  NA W L        +H        +A    +R      
Sbjct: 53  RPLEQFNVSVGVSDEFIQAVQNNAPWEL--------VHKARPGATLLAQGARQRVDG--- 101

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           + V+  + A  LW  ++   ++   P I F    N  + 
Sbjct: 102 LWVYATVPARDLWDTIMKSAYDFAEPGILFLGRINEDNN 140


>gi|270265098|ref|ZP_06193361.1| anaerobic ribonucleoside-triphosphate reductase [Serratia odorifera
           4Rx13]
 gi|270041032|gb|EFA14133.1| anaerobic ribonucleoside-triphosphate reductase [Serratia odorifera
           4Rx13]
          Length = 671

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           + Q       V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 5   VAQQMAQQPRVDIHDIQQAVENQLMAGEYKQLARAYIEYRHDRDVARELRGRLNQE 60


>gi|310005795|gb|ADP00181.1| ribonucleotide reductase domain-containing protein [Cyanophage
           NATL2A-133]
          Length = 458

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 368 LSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G      + +  +   +Y  G+    + +R  G   +G    + G 
Sbjct: 24  PVSCTVFVVEDSMEGENGIEASWRFASHALRYGAGVAIHLSKLRSKGTE-NGKGLVASGP 82

Query: 425 IPFLKVANDTAVAVNQGGKRKG-----AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           + F K+ +     +N+  +R G     A+ A+ +  H D+ +F+   ++     +R  ++
Sbjct: 83  VSFAKIYS----VLNETLRRGGVYKNGAIVAHCDIDHADIIDFITTPRHELPWIKRCVNL 138

Query: 480 NTANW 484
           +   W
Sbjct: 139 DDEKW 143


>gi|218513067|ref|ZP_03509907.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           8C-3]
          Length = 229

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK--TTYYLRSR 906
              I   +  Q +I  A S  + + +E + +     Y  +W +GLK    Y   S+
Sbjct: 120 ESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLKANALYRDGSK 175


>gi|154149519|ref|YP_001406022.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           hominis ATCC BAA-381]
 gi|153805528|gb|ABS52535.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           hominis ATCC BAA-381]
          Length = 893

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%)

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           + ++ + ++      +  + +  + +EDIQD +E  L +SG+ K+ + ++LYR      R
Sbjct: 194 ENLEQINDKNQNLKNEKTEISCKISVEDIQDMIEKELFKSGNFKVLKSFMLYRHTHKLQR 253

Query: 130 AAQSHSKSDAPIAPKLKIMMD 150
                   D       + + +
Sbjct: 254 EHILGLNDDTTYINSTQTINE 274



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
          +++IKR+G + +F P KI  AI KAF +            Q II  +       L  +N
Sbjct: 2  IKIIKRDGSLENFMPFKIQDAIKKAFES--ENYVFDDKIYQAIISRIILDDEQNLDANN 58


>gi|154502201|ref|ZP_02039261.1| hypothetical protein RUMGNA_00011 [Ruminococcus gnavus ATCC 29149]
 gi|153797080|gb|EDN79500.1| hypothetical protein RUMGNA_00011 [Ruminococcus gnavus ATCC 29149]
          Length = 719

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G +  ++  KI  AI K+               QD    +  + +  + + + 
Sbjct: 1   MKVIKKDGTLEEYNEQKIINAIDKSAQ------RENFTFSQDEYGMICNRVLNEVDEEDF 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               V +  I + VE +L+     K+  +Y  YR 
Sbjct: 55  ENDEVPVGFIHNIVEKTLLDL-FPKVGYQYQQYRN 88


>gi|255316678|ref|ZP_05358261.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium difficile QCD-76w55]
          Length = 706

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 162/501 (32%), Gaps = 103/501 (20%)

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFE----------YLGLQILYDRYFLHING- 311
           G++ R L +         L  + ++  D  F           Y+G   + D+Y L     
Sbjct: 58  GLEERFLLKHNKTISFNELKEEAEFFYDNLFNLKTFPSGRTLYMGGTEIVDKYPLSNYNC 117

Query: 312 -----SRIEMPQAFF--MRVAMGLALKETEKE----------------------KRAVEF 342
                +  E  +  F  + V  G+ L+ T++E                      K   E 
Sbjct: 118 GFMSLNSFESFEDLFYLLMVGCGIGLRITKEEVNKLPNIKEVEVEHIHNPNFRKKELKER 177

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA-----KYS 397
           Y    +     +      +              V D   G   AL+    +      K  
Sbjct: 178 YLNFLNGKNEKNPYDEIENTVIDIIDIDTIELKVGDSKEGWVDALRYYFKIISEDTYKDI 237

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQG---VIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             +  +++ VR  G  +    G++ G   ++   K  N+  + + +              
Sbjct: 238 RKIIINYSYVRDAGEPLKRFGGRASGHESLLVMFKKINNITLGIKKLST----------- 286

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR-VTQNAGWTLFSPDEVSDLH-- 511
                                 + ++ A  I +  +   V +++   L  PD++  ++  
Sbjct: 287 ---------------------INCLDIATIISENVVCGGVRRSSLIILCDPDDIDLINAK 325

Query: 512 -DLYGKEFEIAYENYERQADRGEIK---VFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            D+Y  +    +   E    R       +F+   ++   ++++  +   G P     +  
Sbjct: 326 KDIYSIDKNGNFLIDESVGHRRMSNNSILFQSKPSINKIKEVMESIKNNGEPGFLNGENA 385

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             R            N C EI L S S     CNL + NL+   +N++ D D L S +R 
Sbjct: 386 LKRKSD-----FEGCNPCGEILLKSKS----CCNLTTTNLVNFISNDKLDIDALKSVLRL 436

Query: 628 AVRVLDNV--IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +VR+   +  ID      +K  KS+   R IG+ L G     +L ++ Y   E  EI + 
Sbjct: 437 SVRIALRMTLIDAELKEWDKVMKSD---RVIGVSLTGIMDMFNLTNMTYR--ELGEILNT 491

Query: 686 SMEFISFHAISASVELAQERG 706
               +       S  L  E  
Sbjct: 492 LRAVVHDEGERYSKVLGIEAP 512


>gi|310005683|gb|ADP00071.1| ribonucleotide reductase domain-containing protein [Cyanophage
           9515-10a]
          Length = 458

 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 368 LSSCFLTTVPDDLYGIF---GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G      + +  +   +Y  G+    + +R  G   +G    + G 
Sbjct: 24  PVSCTVFVVEDSMEGENGIEASWRFASHALRYGAGVAIHLSKLRSKGTE-NGKGLVASGP 82

Query: 425 IPFLKVANDTAVAVNQGGKRKG-----AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           + F K+ +     +N+  +R G     A+ A+ +  H D+ +F+   ++     +R  ++
Sbjct: 83  VSFAKIYS----VLNETLRRGGVYKNGAIVAHCDIDHADIIDFITTPRHELPWIKRCVNI 138

Query: 480 NTANW 484
           +   W
Sbjct: 139 DDEKW 143


>gi|62996800|gb|AAY24450.1| ribonucleoside-diphosphate reductase large chain precursor
           [Costelytra zealandica iridescent virus]
          Length = 378

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 565 DPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           D      P  + GV +   +  C+EI L +    TAVC L S+NL  +  +N  D ++  
Sbjct: 279 DTYCFSEPLNNAGVFNGILTGQCSEIILPTDENRTAVCCLASLNLDYY--DNWCDNEQFY 336

Query: 623 -STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                    VL   ID    ++++A  S  + RAIG+G+MG 
Sbjct: 337 LDVATYLDNVLQYFIDNAPRSLKRAIYSAESERAIGIGVMGL 378



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 30/144 (20%)

Query: 457 IDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFMKRV------------TQNAGWTL 501
            ++  FL+ R+ +G   D   +  +++    IPD FM+++                   +
Sbjct: 1   PEIISFLNTRRVSGFGGDYNYKLMNIHNGVNIPDNFMRKIWFISTVAPILKQENGKRMKM 60

Query: 502 F---------SPDEVSDLH-DLYGKEFEIAYENYERQ-----ADRGEIKVFRKISAVALW 546
                     S   V + + DL     E A    +        D    +V   ISA  LW
Sbjct: 61  LEEAIKTFQNSDKWVDENNLDLNKLTIENAQTYIKEMDKFDLTDPHNKEVKETISATELW 120

Query: 547 RKMLTMLFETGHPWITFKDPCNIR 570
            ++L    E G P+  F D  N +
Sbjct: 121 ERILVTRAECGEPYCHFIDTSNRK 144


>gi|215923|gb|AAA32531.1| ORF3 [Enterobacteria phage T4]
          Length = 67

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEGTS-VDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRT 208
           ++  
Sbjct: 63  AAAN 66


>gi|26553948|ref|NP_757882.1| anaerobic ribonucleoside-triphosphate reductase [Mycoplasma
           penetrans HF-2]
 gi|26453956|dbj|BAC44286.1| anaerobic ribonucleoside-triphosphate reductase [Mycoplasma
           penetrans HF-2]
          Length = 713

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IK++    SFDP+KI  A+ K+  AV          +  I+ N+ ++            
Sbjct: 11  IIKKDNTKQSFDPNKIKTAVSKS--AVRVMVNFTEQDLDKIVNNVLDKI------RQSEY 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
             +HI  + + VE SL +  +  + + Y  YR 
Sbjct: 63  SEIHISLMHNLVEKSLEEL-YPAVAKSYKDYRN 94


>gi|325171079|ref|YP_004251054.1| anaerobic nucleoside diphosphate reductase [Vibrio phage ICP1]
 gi|323512474|gb|ADX87929.1| anaerobic nucleoside diphosphate reductase [Vibrio phage ICP1]
          Length = 695

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 13/95 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    FD  KI  A+ K            S    +I  +  +      L  ++
Sbjct: 1   MKVVKRDGIKQDFDIKKIFNAVSK------------SATRCNITLSEVDLVELEFLILDE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + ++++ + VE  L +    ++   Y  YR 
Sbjct: 49  VCGDIEVKELHNTVEKCLSRIN-PEVADSYKQYRN 82



 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDLET 200
           +K++  DG    F+ K++   V ++ +     L +V    +       +   +   +L  
Sbjct: 1   MKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEVDLVELEFLILDEVCGDIEVKELHN 60

Query: 201 ALIFSSRTLIEKEPNYAKVTAR-------FLLEKLRREVLTTVY--KKPQKATHHEMQCL 251
             +    + I  E   +    R        L +K+  +    +Y   +        +   
Sbjct: 61  T-VEKCLSRINPEVADSYKQYRNYKQDFVGLWDKIYNKTKDVLYAGDRENSNFESTLVST 119

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFE 294
                  Y+ + +  +       + +   +    +++ RD  F 
Sbjct: 120 KGSLVKGYLAKELYTKFFLSK-EEKEATDIGFIYQHDQRDLIFN 162


>gi|213021750|ref|ZP_03336197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 33/120 (27%)

Query: 775 ICGVSQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +   + SI P    + ++    +G       F+ NE                        
Sbjct: 1   VNHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNE------------------------ 36

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892
                     ++  A++I P  +I++ +   + +DQ  SL L + D  + + ++     A
Sbjct: 37  -------NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 89


>gi|213026344|ref|ZP_03340791.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 55

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 288 ERDFAFEYLGLQILYDRYFL--HINGSRIEMPQAFFMRVAMGLALKET 333
           +RD  F Y  ++ L  +Y +   + G   E  Q  ++ V   L     
Sbjct: 1   DRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVVACLFSNYP 48


>gi|293380784|ref|ZP_06626829.1| hypothetical protein HMPREF0891_0024 [Lactobacillus crispatus
           214-1]
 gi|290922648|gb|EFD99605.1| hypothetical protein HMPREF0891_0024 [Lactobacillus crispatus
           214-1]
          Length = 78

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 865 KWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           K++DQ+ SL L+  D  + + L+  Y  A+     + YY+R R         L   +
Sbjct: 9   KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 65


>gi|254388614|ref|ZP_05003848.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702335|gb|EDY48147.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
          Length = 76

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 314 IEMPQAFFMRVAMGLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           +E PQ F +R A GLA  +TE+        Y  +S  +++ S+PTLFNSGTR   +SSC+
Sbjct: 2   VETPQHFMLRGACGLAEDDTERALDEDAALYRRMSRLYYLPSSPTLFNSGTRQSHMSSCY 61

Query: 373 LTTVP 377
               P
Sbjct: 62  FRETP 66


>gi|260587428|ref|ZP_05853341.1| anaerobic ribonucleoside-triphosphate reductase [Blautia hansenii
           DSM 20583]
 gi|260542295|gb|EEX22864.1| anaerobic ribonucleoside-triphosphate reductase [Blautia hansenii
           DSM 20583]
          Length = 714

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+  KI RA+ K+               +D I  L E    +     K
Sbjct: 5   MYVIKKDGTKEDFNIQKIVRAVNKSA------SRIMYDFKKDEIDFLCEYAEEKAQSLEK 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
               + I+D+ + VE +L +     + + Y  YR  + D
Sbjct: 59  EE--ISIQDMHNIVEGALEKVN-PAVAKSYRDYRNYKHD 94


>gi|331083709|ref|ZP_08332820.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403920|gb|EGG83472.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 711

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+  KI RA+ K+               +D I  L E    +     K
Sbjct: 2   MYVIKKDGTKEDFNIQKIVRAVNKSA------SRIMYDFKKDEIDFLCEYAEEKAQSLEK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
               + I+D+ + VE +L +     + + Y  YR  + D
Sbjct: 56  EE--ISIQDMHNIVEGALEKVN-PAVAKSYRDYRNYKHD 91


>gi|308233666|ref|ZP_07664403.1| anaerobic ribonucleoside triphosphate reductase [Atopobium
          vaginae DSM 15829]
          Length = 59

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
          +++IKRNG    F+  KI  AI  A   V          +
Sbjct: 1  MKIIKRNGSEVEFNLHKIINAISAANKEVPEDERLTEREI 40


>gi|113952007|gb|ABI48943.1| NrdA [Enterobacteria phage TuIa]
          Length = 105

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 839 DDLKKIHATAFEIDPMW---LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFI 888
           +    ++  A+++        +   +   KW+ Q+ S N Y D    +K       +   
Sbjct: 5   EHNMSLYDYAWKLAKKGNKPYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDD 64

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
               W  G K  YY  +R  +  +   L+    +
Sbjct: 65  LLYFWYFGGKNLYYHNTRDGSGTDDYELETPKAE 98


>gi|289809784|ref|ZP_06540413.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 669

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +     +   V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 1   EVVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 58


>gi|262189796|ref|ZP_06048142.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae CT 5369-93]
 gi|262034322|gb|EEY52716.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae CT 5369-93]
          Length = 665

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 15  VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 62


>gi|319942807|ref|ZP_08017109.1| anaerobic nucleoside diphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803617|gb|EFW00573.1| anaerobic nucleoside diphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 724

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+K++  +  F P KI  AIMKA    + +    ++                + +  +
Sbjct: 6   FKVLKKDNTLEDFKPQKIVEAIMKAAFRCDKQIPDETMFAMA----------NSISERLQ 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
           S   V + ++ + V  +L   G   +   Y  YR  +++        + DA    +L
Sbjct: 56  SRKKVPVAELHELVIGTLATFGFKDVATSYAEYRYYKNNYAKTFEQLRQDADDVLRL 112


>gi|78217729|gb|ABB37078.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 638

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           + Q  +   +   E +QD +E  LM+S  + + R +++YRE R  +R  Q+     +   
Sbjct: 1   MEQRLEGIDVPCQEQVQDTIEMILMESRLYHVARRFIIYRENRRQLREQQAAYLDISETI 60

Query: 143 P 143
            
Sbjct: 61  D 61


>gi|148684654|gb|EDL16601.1| ribonucleotide reductase M1, isoform CRA_a [Mus musculus]
          Length = 88

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLE 199
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G  +  ++
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGADDLSID 57


>gi|536840|gb|AAA85331.1| ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 64

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ-N 496
           N    R   +C Y E WH D  + L +R ++ G++  R  ++ TA W+PDLFMKR+ Q  
Sbjct: 1   NGAANRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPG 60

Query: 497 AGWT 500
           + WT
Sbjct: 61  SKWT 64


>gi|269975274|gb|ACZ55498.1| anaerobic nucleoside diphosphate reductase [Staphylococcus phage
           SA1]
          Length = 714

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+   V  K         D+ + L    +  L++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVTKSANRVGYKELPP-----DVTQALESAFMRILVK 55

Query: 86  H-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              ++ L++ + DI   VE +L +  H +I   Y  YR  R +V  
Sbjct: 56  STKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEVAQ 100


>gi|38707876|ref|NP_944999.1| Anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           Felix 01]
 gi|33340479|gb|AAQ14830.1| putative anaerobic nucleoside diphosphate reductase [Enterobacteria
           phage Felix 01]
          Length = 714

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+   V  K         D+ + L    +  L++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVTKSANRVGYKELPP-----DVTQALESAFMRILVK 55

Query: 86  H-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              ++ L++ + DI   VE +L +  H +I   Y  YR  R +V  
Sbjct: 56  STKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEVAQ 100


>gi|295109175|emb|CBL23128.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus obeum
           A2-162]
          Length = 711

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    FDP KI +A+ K+         + S   +D I    ++    L ++  
Sbjct: 2   IYVIKKDGTREEFDPQKIVKAVNKSAA---RILYTFSQEERDFICRFAQEHADSLGKNE- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + I+++ + VE +L +     + + Y  YR 
Sbjct: 58  ----IEIQEMHNIVEGALERVN-PAVAKSYRDYRN 87


>gi|153809853|ref|ZP_01962521.1| hypothetical protein RUMOBE_00234 [Ruminococcus obeum ATCC 29174]
 gi|149834031|gb|EDM89111.1| hypothetical protein RUMOBE_00234 [Ruminococcus obeum ATCC 29174]
          Length = 762

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E+   + VIK++G    FDP KI +A+ K+           S   +D I    ++    L
Sbjct: 48  ERQGMIYVIKKDGTREEFDPQKIVKAVNKSAA---RILYKFSPEEKDFICRFAQEHADSL 104

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            ++      + I+++ + VE +L +     + + Y  YR 
Sbjct: 105 GKNE-----IEIQEMHNIVEGALERVN-PAVAKSYRDYRN 138


>gi|323512705|gb|ADX88159.1| anaerobic nucleoside diphosphate reductase [Vibrio phage
           ICP1_2006_D]
 gi|323512933|gb|ADX88386.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2006_C]
 gi|323513161|gb|ADX88613.1| anaerobic nucleoside diphosphate reductase [Vibrio phage
           ICP1_2006_B]
 gi|323513388|gb|ADX88839.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2006_A]
 gi|323513620|gb|ADX89070.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2005_A]
          Length = 721

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    FD  KI  A+ K+  A         + + ++   + ++          
Sbjct: 27  LKVVKRDGIKQDFDIKKIFNAVSKS--ATRCNITLSEMDLVELEFLILDEVC-------- 76

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + ++++ + VE  L +    ++   Y  YR 
Sbjct: 77  --GDIEVKELHNTVEKCLSRIN-PEVADSYKQYRN 108



 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESD 197
             KLK++  DG    F+ K++   V ++ +     L ++    +       +   +   +
Sbjct: 24  REKLKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEMDLVELEFLILDEVCGDIEVKE 83

Query: 198 LETALIFSSRTLIEKEPNYAKVTAR-------FLLEKLRREVLTTVY--KKPQKATHHEM 248
           L    +    + I  E   +    R        L +K+  +    +Y   +        +
Sbjct: 84  LHNT-VEKCLSRINPEVADSYKQYRNYKQDFVGLWDKIYNKTKDVLYAGDRENSNFESTL 142

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFE 294
                     Y+ + +  +       + +   +    +++ RD  F 
Sbjct: 143 VSTKGSLVKGYLAKELYTKFFLSK-EEKEATDIGFIYQHDQRDLIFN 188


>gi|295398082|ref|ZP_06808131.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973601|gb|EFG49379.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aerococcus viridans ATCC 11563]
          Length = 756

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V KR+G   +FD  K+ ++I+KA  + + + A  ++ +  ++ NL +      +Q   
Sbjct: 17  VKVHKRDGRTVAFDVDKLQQSIIKASQSKQAETADINLILHQVLANLAD------IQKAN 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               + +  I  Q+   L     + I   Y+  R+   +  A  ++ ++
Sbjct: 71  PNDAIEVTTIHHQLVQVLQDQNFNHIAETYLANRQVAEERFANATNIQT 119


>gi|242218095|ref|XP_002474841.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725968|gb|EED79933.1| predicted protein [Postia placenta Mad-698-R]
          Length = 158

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           ++   W  GLKT  YYLR+R A    + T+   
Sbjct: 1   MHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQS 33


>gi|212697477|ref|ZP_03305605.1| hypothetical protein ANHYDRO_02047 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675476|gb|EEB35083.1| hypothetical protein ANHYDRO_02047 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 130

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG +  FD  KISR+I  A           +     I+KN  E+ + +   H++
Sbjct: 42  LYVKKRNGKIELFDVEKISRSIKNAAR---NGNIELNTSDISILKNDLEKIIKK--NHHR 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                 I++    VE  L + G+ K+   Y  Y
Sbjct: 97  ILPTATIKE---YVENILEEDGYKKVLESYTSY 126


>gi|325847039|ref|ZP_08169865.1| hypothetical protein HMPREF9246_1200 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481011|gb|EGC84056.1| hypothetical protein HMPREF9246_1200 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 130

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG +  FD  KISR+I  A           +     I+KN  E+ + +   H++
Sbjct: 42  LYVKKRNGKIELFDVEKISRSIKNAAR---NGNIELNTSDVSILKNDLEKIIKK--NHHR 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                 I++    VE  L + G+ K+   Y  Y
Sbjct: 97  ILPTATIKE---YVENILEEDGYKKVLESYTSY 126


>gi|238801857|ref|YP_002922907.1| anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           WV8]
 gi|216263070|gb|ACJ71938.1| anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           WV8]
          Length = 714

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+   V  K         D+ + L    +  L++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVAKSANRVGYKELPP-----DVTQALESAFMRILVK 55

Query: 86  H-NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              ++ L++ + DI   VE +L +  H +I   Y  YR  R +V  
Sbjct: 56  STKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEVAQ 100


>gi|291547153|emb|CBL20261.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           SR1/5]
          Length = 711

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+P KI  A+ K   + E    + S   +D I    ++    L ++  
Sbjct: 2   LYVIKKDGTREEFNPQKIVAAVNK---SAERILYTFSDEEKDFICRFAQEHADSLGKNE- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + I+++ + VE +L +     + + Y  YR 
Sbjct: 58  ----IEIQEMHNIVEGALERVN-PAVAKSYRDYRN 87


>gi|317499778|ref|ZP_07958033.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316892944|gb|EFV15171.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 706

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G    F+  K+  A+ K+         +     ++ +  +      ++ Q  K
Sbjct: 2   IKVIKKDGTKEEFNVQKVVVAVNKSA------YRALVTFTEEELDFICNFVTEKVEQMRK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I D+ + VE +L Q+    + + Y  YR  +      Q   +    +  K + +
Sbjct: 56  KE--VTISDMHNVVEGALEQTNPL-VAKSYRDYRNYK------QDFVQMLDEVYKKSQSI 106

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           M  G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 107 MYIGDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 149


>gi|291560161|emb|CBL38961.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SSC/2]
          Length = 706

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G    F+  K+  A+ K+         +     ++ +  +      ++ Q  K
Sbjct: 2   IKVIKKDGTKEEFNVQKVVVAVNKSA------YRALVTFTEEELDFICNFVTEKVEQMRK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I D+ + VE +L Q+    + + Y  YR  +      Q   +    +  K + +
Sbjct: 56  KE--VTISDMHNVVEGALEQTNPL-VAKSYRDYRNYK------QDFVQMLDEVYKKSQSI 106

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           M  G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 107 MYIGDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 149


>gi|167768131|ref|ZP_02440184.1| hypothetical protein CLOSS21_02686 [Clostridium sp. SS2/1]
 gi|167709655|gb|EDS20234.1| hypothetical protein CLOSS21_02686 [Clostridium sp. SS2/1]
          Length = 716

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G    F+  K+  A+ K+         +     ++ +  +      ++ Q  K
Sbjct: 12  IKVIKKDGTKEEFNVQKVVVAVNKSA------YRALVTFTEEELDFICNFVTEKVEQMRK 65

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V I D+ + VE +L Q+    + + Y  YR  +      Q   +    +  K + +
Sbjct: 66  KE--VTISDMHNVVEGALEQTNPL-VAKSYRDYRNYK------QDFVQMLDEVYKKSQSI 116

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           M  G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 117 MYIGDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 159


>gi|323514080|gb|ADX89528.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2004_A]
          Length = 721

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    FD  KI  A+ K            S    +I  +  +      L  ++
Sbjct: 27  LKVVKRDGIKQDFDIKKIFNAVSK------------SATRCNITLSEMDLVKLEFLILDE 74

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + ++++ + VE SL +    ++   Y  YR 
Sbjct: 75  VCGDIEVKELHNTVEKSLSRIN-PEVADSYRQYRN 108



 Score = 38.2 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 54/172 (31%), Gaps = 26/172 (15%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESD 197
             KLK++  DG    F+ K++   V ++ +     L ++    +       +   +   +
Sbjct: 24  REKLKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEMDLVKLEFLILDEVCGDIEVKE 83

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE--- 254
           L    +  S + I  E     V   +   +  ++    ++ K    T   +     E   
Sbjct: 84  LHNT-VEKSLSRINPE-----VADSYRQYRNYKQDFVGLWDKIYNKTKDVLYAGDRENSN 137

Query: 255 -----------YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFE 294
                          Y+ + +  +       + +   +    +++ RD  F 
Sbjct: 138 FESTLVSTKGSLVKGYLAKELYTKFFLSK-EEKEATDIGFIYQHDQRDLIFN 188


>gi|328553045|gb|AEB23537.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 83

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  Y  E +I  + Y+   +   ++  +  +A  L  ++  +  E+G+P+
Sbjct: 1   MFYPHSVYKEYGQYLDEMDI-NKMYDELVENPRLRKAKG-NARKLLEQLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLC 585
           I F D  N   P +H+  V  SNLC
Sbjct: 59  IMFADNVNKVHPNEHISKVKFSNLC 83


>gi|47195913|emb|CAF89003.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 120

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 32/101 (31%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSS------------------------------ 178
           DG   + +  ++   V++ C GL    V                                
Sbjct: 1   DGRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQ 60

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
             +  +  + +Y G++ ++L+T    ++ TL  K P+YA +
Sbjct: 61  AQITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAIL 101


>gi|4585801|emb|CAB40907.1| anaerobic ribonucleotide reductase [Pseudomonas stutzeri]
          Length = 63

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           E  K V V KR+G + +F+  KI RAI+ A  A     A  +  + + ++
Sbjct: 11 AELAKPVSVRKRDGRLAAFEVDKIERAIVAAGAATGEFEAPVAQPLAEAVR 61


>gi|291335863|gb|ADD95459.1| ribonucleotide reductase domain protein [uncultured phage
           MedDCM-OCT-S08-C304]
          Length = 429

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK--SQGVIPFLKVANDTAVAV 438
            GI  + +  +   +Y  G+    + +R  G   +       + G + F K  +     +
Sbjct: 5   NGIEASWRFVSHALRYGAGVSVHLSKLRPAGTTTNKGPDSLVASGPVSFAKFYSTLNEIL 64

Query: 439 NQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            +GG  R GAV   L+  H D+ EF+  ++      +R  ++    W
Sbjct: 65  RRGGTYRNGAVVLALDITHTDILEFVLAKREELPWVKRCINLTPDQW 111


>gi|167748122|ref|ZP_02420249.1| hypothetical protein ANACAC_02866 [Anaerostipes caccae DSM 14662]
 gi|167652114|gb|EDR96243.1| hypothetical protein ANACAC_02866 [Anaerostipes caccae DSM 14662]
          Length = 722

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+K++G    F+  K+  A+ K+         +     +D +  +      R+ + NK
Sbjct: 18  IRVVKKDGTKEDFNIQKVVTAVNKSA------YRALVKFTEDELDEICRFVNGRVDELNK 71

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           S   VHI ++ + VE +L +     + + Y  YR 
Sbjct: 72  SE--VHITEMHNVVEGALERVN-PGVAKSYRDYRN 103


>gi|291335810|gb|ADD95410.1| ribonucleotide reductase domain protein [uncultured phage
           MedDCM-OCT-S05-C849]
          Length = 429

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK--SQGVIPFLKVANDTAVAV 438
            GI  + +  +   +Y  G+    + +R  G   +       + G + F K  +     +
Sbjct: 5   NGIEASWRFVSHALRYGAGVSVHLSKLRPAGTTTNKGPDSLVASGPVSFAKFYSTLNEIL 64

Query: 439 NQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            +GG  R GAV   L+  H D+ EF+  ++      +R  ++    W
Sbjct: 65  RRGGTYRNGAVVLALDITHTDIIEFVLAKREELPWVKRCINLTPDQW 111


>gi|317472347|ref|ZP_07931674.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900189|gb|EFV22176.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 706

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+K++G    F+  K+  A+ K+         +     +D +  +      R+ + NK
Sbjct: 2   IRVVKKDGTKEDFNIQKVVTAVNKSA------YRALVKFTEDELDEICRFVNGRVDELNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           S   VHI ++ + VE +L +     + + Y  YR 
Sbjct: 56  SE--VHITEMHNVVEGALERVN-PGVAKSYRDYRN 87


>gi|328480215|gb|EGF49141.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 83

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 857 IESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTT 900
           ++  +  Q+ +DQ  ++ L++                D+ + + L+ +   A   G+K+ 
Sbjct: 1   MDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSI 60

Query: 901 YYLRS 905
           YY+R+
Sbjct: 61  YYIRT 65


>gi|218670751|ref|ZP_03520422.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 146

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 17/127 (13%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEK--LRREVLTTVYKKPQKATHHEMQCLYP 253
             L+   + +   L + E        R  L+K  L  +     +        H +     
Sbjct: 32  ETLDYHALNAMLNLYDDE-------GRIQLDKDRLAAKQYFLQHVNQNTVFFHNL----R 80

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NG 311
           E     + EG   + + +    F+ V    D  Y R F F  +LG    Y  Y L   +G
Sbjct: 81  EKLEYLVTEGYYEQEVLD-QYSFNFVRDLFDQAYARKFRFPTFLGAFKYYTSYTLKTFDG 139

Query: 312 SRI-EMP 317
            R  E  
Sbjct: 140 KRYLERY 146


>gi|254505314|ref|ZP_05117462.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Labrenzia alexandrii DFL-11]
 gi|222436158|gb|EEE42840.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Labrenzia alexandrii DFL-11]
          Length = 684

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 111/347 (31%), Gaps = 44/347 (12%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              + D          +   + K    +  D+T +R  G  + G    S G   F K   
Sbjct: 161 FIQIGDSAEAWAKVPGKILRMKKKVDKIVLDFTQIRSAGERLKGYGWISSGDETFSKALF 220

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +    +N    R+           ID+ + ++    T   RR        +  P+     
Sbjct: 221 EICNILN----RRAGQLLT----KIDIMDIMNWLGTTLSSRRSAEICVMPSSDPEALDFA 272

Query: 493 VTQNAGWTLFSPDE--VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK-- 548
           V +   ++   PD   V    D +G+ +E        +      +  +  +++  W K  
Sbjct: 273 VAKKNHYSWKWPDGSLVEFPEDCFGEAYEEFIREITEKGAYWNPQRAQSNNSLLFWEKPT 332

Query: 549 ------MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
                 +  M+ + G     F +    ++     G     N C EI L     + + CNL
Sbjct: 333 KLEIKGLFQMMVDAGGSEPGFINAAAAKAR---GGWFKGCNPCAEILL----GDKSFCNL 385

Query: 603 GSINLLAHFANNQFDYDKLASTIR-----TAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             +++     +    +  +    R     T V + D V+  + H      + N   R  G
Sbjct: 386 VEVDMAKFIGDEGGLWYAIYLAARANYRQTCVNLRDGVLSDSWH------ELNEFLRLTG 439

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +GL G         + +    + +  D  +    ++A      +A E
Sbjct: 440 VGLTGI--------VKWIDGGSHKRPDIILGHCRYYAQEGVTTMADE 478


>gi|218672028|ref|ZP_03521697.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 253

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLY---GIFGALQENAMLAKYSGGLGNDWTPVRG 409
               T   S   HPQ  +CF+ +V DDL    GI       A L KY  G G++++ +RG
Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRG 240

Query: 410 LGA 412
            G 
Sbjct: 241 EGE 243


>gi|323486663|ref|ZP_08091984.1| hypothetical protein HMPREF9474_03735 [Clostridium symbiosum
           WAL-14163]
 gi|323692191|ref|ZP_08106434.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323400044|gb|EGA92421.1| hypothetical protein HMPREF9474_03735 [Clostridium symbiosum
           WAL-14163]
 gi|323503765|gb|EGB19584.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 710

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIK++G    F+  K+  A+ K+      + +   I     I    E+ V +L  +
Sbjct: 4   SEIKVIKKDGTREDFNIQKVVVAVHKSAERAMIRFSQDEIT---FICRFVEEKVEKLEDN 60

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                 +H     + VE +L +     + + Y  YR 
Sbjct: 61  RIPIFQMH-----NLVEGALERVN-PAVAKSYRDYRN 91


>gi|289810234|ref|ZP_06540863.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 47

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
           V+KR+G    F   +I  AI++A  A     A     V +++ +
Sbjct: 2  HVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSS 46


>gi|15211870|emb|CAC51104.1| ribonucleotide reductase large subunit [Bacillus sp. M1321]
          Length = 89

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNL 602
           E+G+P++ F D  N   P +H+  V  SNLC+E+               +E  +   CNL
Sbjct: 1   ESGYPYVMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGLDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|291563039|emb|CBL41855.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 710

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
             ++VIK++G    F+  K+  A+ K A  A+     + S  + + ++   E+       
Sbjct: 4   SEIKVIKKDGTKEEFNVQKVLAAVNKSANRAMIIFSKAESKFICEFVEEKAEEL------ 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                  V I  + + VE +L +     + + Y  YR 
Sbjct: 58  ---DQSEVPIAQMHNIVEGALERVN-PVVAKSYRDYRN 91


>gi|261886386|ref|ZP_06010425.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 90

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           + +E+IQD +E +L  SG   + R ++LYR   +  R  +   ++ 
Sbjct: 8   MSVEEIQDIIEKALFDSGDFTVMRNFMLYRHTHTMQRDGELDERTT 53


>gi|225573040|ref|ZP_03781795.1| hypothetical protein RUMHYD_01231 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039604|gb|EEG49850.1| hypothetical protein RUMHYD_01231 [Blautia hydrogenotrophica DSM
           10507]
          Length = 711

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G    F+  KI  A+ K+  A            + I +  TE+  +   +   
Sbjct: 2   IYIIKKDGTREEFNAEKIVTAVNKS--AARILYKFSEEEKEFICRFATEKAESLGKKEIP 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                 I+D+ + VE +L +     + + Y  YR 
Sbjct: 60  ------IQDMHNIVEGALERVN-PAVAKSYRDYRN 87


>gi|219556408|ref|ZP_03535484.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T17]
          Length = 83

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK--TTYYLRSRSATSVEKST 915
                Q+ ++ A S  + L    +   +  IY  AW   +K  T Y   SR    +  + 
Sbjct: 1   MQGAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLSYAA 60

Query: 916 LK 917
            K
Sbjct: 61  PK 62


>gi|15211872|emb|CAC51105.1| ribonucleotide reductase large subunit [Bacillus sp. M135]
          Length = 89

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETAV---CNL 602
           E+G+P+I F D  N   P +H+  V  SNLC+E+               +E  +   CNL
Sbjct: 1   ESGYPYIMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGLDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|218128619|ref|ZP_03457423.1| hypothetical protein BACEGG_00189 [Bacteroides eggerthii DSM 20697]
 gi|217989221|gb|EEC55535.1| hypothetical protein BACEGG_00189 [Bacteroides eggerthii DSM 20697]
          Length = 233

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           ++ +Y +AW  G K     R  S + V  ST      K N +P   P   T     P   
Sbjct: 6   VNRLYVEAWKSGCKGCTVYRDGSRSGVLISTK---SDKKNELPPCKP--PTVVETRPKVL 60

Query: 945 TSD 947
            +D
Sbjct: 61  EAD 63


>gi|253580139|ref|ZP_04857406.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848658|gb|EES76621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 741

 Score = 50.5 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+  KI  A+ K+         + S + ++ I    E+    L ++  
Sbjct: 32  IYVIKKDGTREEFNSQKIVAAVNKSAA---RILYTFSDKEKEFICQFAEEHAEALGKNE- 87

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               + I+++ + VE +L +     + + Y  YR 
Sbjct: 88  ----IEIQEMHNIVEGALERVN-PAVAKSYRDYRN 117


>gi|226331038|ref|ZP_03806556.1| hypothetical protein PROPEN_04968 [Proteus penneri ATCC 35198]
 gi|225201833|gb|EEG84187.1| hypothetical protein PROPEN_04968 [Proteus penneri ATCC 35198]
          Length = 96

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQ 812
            T G+ N N  AI PT +I+ I   + SI P    + ++     G       F+ NE +Q
Sbjct: 1   MTHGIYNQNLQAIPPTGSISYINHSTSSIHPIAAPIEIRKEGKIGRVYYPAPFMTNENRQ 60

Query: 813 RDLWDEAMISDLKY 826
                  + ++  Y
Sbjct: 61  YYQDAYEIGAEKNY 74


>gi|207093469|ref|ZP_03241256.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 54

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 23/53 (43%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +
Sbjct: 2   ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEE 54


>gi|307691058|ref|ZP_07633504.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           cellulovorans 743B]
          Length = 56

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
           +     L+K  GG+    + +R  GA I     +S GVI  +K+  D     NQ
Sbjct: 1   MNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVILAMKMLEDAFSYANQ 54


>gi|330905569|gb|EGH36141.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 34

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 30/30 (100%)

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           TAVAVNQGGKRKGAVCAYLETWH+D+EEF+
Sbjct: 5   TAVAVNQGGKRKGAVCAYLETWHMDIEEFI 34


>gi|296532030|ref|ZP_06894809.1| possible ribonucleoside-triphosphate reductase [Roseomonas
           cervicalis ATCC 49957]
 gi|296267645|gb|EFH13491.1| possible ribonucleoside-triphosphate reductase [Roseomonas
           cervicalis ATCC 49957]
          Length = 806

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 106/369 (28%), Gaps = 71/369 (19%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS-QG 423
            ++  L  V D   G       L+  A        L  D + +R  G+ I G  G+   G
Sbjct: 213 PANAVLHRVEDSREGWAKAIEVLEAMAFQGARDRVLVLDLSAIRPAGSPIRGMQGRPSSG 272

Query: 424 VIPFLK-------------------------------VANDTAVAVNQGGKRKGAVCAYL 452
            I  L+                               V +  +V V  GG R+ A  A  
Sbjct: 273 PISLLRGLLNIRLHVIQPARARDRAAEALQPWEQALLVDHHLSVEVQVGGARRAARMATK 332

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-NAGWTL-----FSPDE 506
                 +  F+  +   G         N +  +   F +RV   +A   L        +E
Sbjct: 333 SWRDPAIRRFIRAKSEGG-----LWTANHSVMVDREFWQRVQSGDASEPLTAHARMVFEE 387

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V+    + G+   I  +  E Q                       +    G      +  
Sbjct: 388 VTACAYINGEPGFINGDLLEDQRTGSAWTKPVHEDGRDFRSARYQVDAAAGLLAECSRRA 447

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN----LGSINLLAHFANNQFDY---- 618
              R P        ++N C EITL+ +     + +    L     L        D     
Sbjct: 448 ATARFPV-------TTNPCGEITLHVTGGYCVIADFAPLLACPAPLEALTPGAIDPELAA 500

Query: 619 ---DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL-HIPY 674
              +++   +R  VR L     ++    E+  ++N     IG+G  G      +   + +
Sbjct: 501 LWDERVEDAVRLGVRFLIRANRMDALYAEEVARTN----RIGIGPTGLHEWAWMRFGLGF 556

Query: 675 AS--PEAVE 681
                EA  
Sbjct: 557 EDLLDEARS 565


>gi|3549302|gb|AAC34830.1| UL45 protein [Macacine herpesvirus 3]
          Length = 187

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 11/167 (6%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+  ++  G+RN+  ++IA     A +  V+ SI  +   +  +  +       +  
Sbjct: 20  WETLRTEMQEYGVRNAQLLSIAADEETAFLWNVTPSIWAARDRIVDEETVLPVSPPSDEC 79

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSI------GNIERIPDDLKKIHATAFEIDPMWLIES 859
               + Q+ L    +      H   +          +  D    +   A E+     +E 
Sbjct: 80  YFPTVMQKHLKVPIINYAWIEHHDEVKAKSITQGTVQRADVPSCVFQRAAEL--QADVEM 137

Query: 860 ASRR-QKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-LMGLK-TTYYL 903
           AS     ++DQ   L  Y +      L       W  +  K   Y  
Sbjct: 138 ASVNVSMFVDQCVPLPFYYESSMTPDLLMKRMLKWYHLRCKVGVYKY 184


>gi|15211877|emb|CAC51108.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 89

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---------NSSSEETA---VCNL 602
           E+G+P+I F D  N   P +H+  V  SNLC+E+               +E      CNL
Sbjct: 1   ESGYPYIMFADNVNKVHPNEHISKVKFSNLCSEVLQASQVSVYTDYDKEDEIGFDISCNL 60

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           GS+N++   +N       +AST+R A+  L  V
Sbjct: 61  GSMNIVNVMSN-----QSIASTVRIAIDSLTTV 88


>gi|257065806|ref|YP_003152062.1| hypothetical protein Apre_0290 [Anaerococcus prevotii DSM 20548]
 gi|256797686|gb|ACV28341.1| hypothetical protein Apre_0290 [Anaerococcus prevotii DSM 20548]
          Length = 132

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E  +   VIKR+G V  F   KI R+I  A       G  ++      +  + +  +  L
Sbjct: 39  EDKENTYVIKRSGSVEKFSKDKIERSIKNAA------GDEKAAMNTSDLAIIVDDVLDTL 92

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
               +        +I++ ++ SL++ G+ K+   ++ Y
Sbjct: 93  DSDPRKVYKTS--EIKNYIKDSLLKEGYSKVYDSFISY 128


>gi|25028919|ref|NP_738973.1| anaerobic ribonucleoside triphosphate reductase [Corynebacterium
           efficiens YS-314]
 gi|259507983|ref|ZP_05750883.1| anaerobic ribonucleoside-triphosphate reductase [Corynebacterium
           efficiens YS-314]
 gi|23494206|dbj|BAC19173.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Corynebacterium efficiens YS-314]
 gi|259164478|gb|EEW49032.1| anaerobic ribonucleoside-triphosphate reductase [Corynebacterium
           efficiens YS-314]
          Length = 728

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           P  E I G+ V+K++G V  + P KI         ++E    +    +      L  +  
Sbjct: 8   PAEELIIGLSVLKKDGRVVDYRPRKILN-------SLEAAERTSGEPLHAPSDQLLGEIT 60

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
            R+ +H     I+  ED+   VE +L QS    +   Y  Y+  + +
Sbjct: 61  RRVAEH----HIISTEDLSRLVEQTLAQS--PAVLAAYRDYQRRQEE 101


>gi|86605778|ref|YP_474541.1| transcriptional regulator NrdR [Synechococcus sp. JA-3-3Ab]
 gi|119372239|sp|Q2JVG1|NRDR_SYNJA RecName: Full=Transcriptional repressor NrdR
 gi|86554320|gb|ABC99278.1| transcriptional regulator, NrdR family [Synechococcus sp. JA-3-3Ab]
          Length = 200

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   SF+ +KI + +M+A    +         V +I + L  + V  +    
Sbjct: 48  PIMVIKRDGSRESFNRNKILQGVMRACQKTQVSVKQMEELVNEIEEKLQLEDVQEVTTLR 107

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
              +++  E +Q      L +  + +    Y  ++  +  V   +   + +  +   L+ 
Sbjct: 108 IGEMVL--ERLQ-----RLSEVAYVRFASVYRKFQGIKDFVTELEQLERLETHLRRDLER 160

Query: 148 MMDD 151
            + +
Sbjct: 161 PLRN 164


>gi|210615132|ref|ZP_03290463.1| hypothetical protein CLONEX_02679 [Clostridium nexile DSM 1787]
 gi|210150440|gb|EEA81449.1| hypothetical protein CLONEX_02679 [Clostridium nexile DSM 1787]
          Length = 712

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + ++VIK++G    F+  K+  A+ K A+ A+          +   ++   E+  T  ++
Sbjct: 6   RMIRVIKKDGTKEEFNVQKVVVAVNKSAYRALIKFTDEELQFICQFVEEEVEKMDTEEIR 65

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                    I  + + VE +L +     + + Y  YR 
Sbjct: 66  ---------IAQMHNVVEGALEKVN-PTVAKSYRDYRN 93


>gi|256544583|ref|ZP_05471955.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399472|gb|EEU13077.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 130

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG +  FD  KI R+I  A         +  +   DI  ++ +  + ++++ N   
Sbjct: 44  VKKRNGKIELFDIDKILRSIKNAAR-----DGNIDLNTSDI--SILKNDLMKMVEKNHKR 96

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           +I     I++ VE  L + G+ K+   Y  Y
Sbjct: 97  IIPTA-KIKEYVENILYEDGYKKVLENYKSY 126


>gi|220925142|ref|YP_002500444.1| transcriptional regulator NrdR [Methylobacterium nodulans ORS 2060]
 gi|254768019|sp|B8ILE2|NRDR_METNO RecName: Full=Transcriptional repressor NrdR
 gi|219949749|gb|ACL60141.1| ATP-cone domain protein [Methylobacterium nodulans ORS 2060]
          Length = 193

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K   +VE      S R++ ++  +T Q  
Sbjct: 45  QLRELTVVKRSGRKVPFDRDKLQRSIDVALRK--RSVE------SDRIERLVSGITRQLE 96

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +           V  E I + V   L   G   +   YV +     + R A+   +    
Sbjct: 97  SS------GEPEVTSEAIGELVMEGL--KGLDDVA--YVRFASVYKNFREAKDFEE---- 142

Query: 141 IAPKLKIMMDDG 152
           +  +L     DG
Sbjct: 143 LLGRLSADQQDG 154


>gi|309388304|gb|ADO76184.1| Ribonucleoside-triphosphate reductase [Halanaerobium praevalens DSM
           2228]
          Length = 608

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 108/317 (34%), Gaps = 56/317 (17%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            ++  VR  G  +    G + G     ++       + +   R                 
Sbjct: 132 FNYDSVRPKGEKLKTFGGTASGHQSLKRMFTKIDKLLKEKPAR----------------- 174

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKR-VTQNAGWTLFSPDEVS------DLHDLY 514
              L +      +    M+ AN I +  +   V +++   LFS ++        +L+   
Sbjct: 175 --ALDQIKRVKLKPIDAMDVANIIAENVVSGGVRRSSQICLFSQEDKEIAQAKNNLYVKE 232

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             E+ I  E   RQ     I    K S   L   +  M F +G P        + R    
Sbjct: 233 NNEWIINKEISHRQMSNNSIFYEAKPSKKQLQWHVKQMRF-SGEPGFINAVEGSRRREN- 290

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVL- 632
                   N C EI L+S      VCNL S+N++A   +  Q D   +    + + R   
Sbjct: 291 ----FKGVNPCAEILLDSR----GVCNLTSLNVMAFVDDEGQLDKKAMFEAQKLSARAGY 342

Query: 633 -DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD----ESM 687
              +I+      ++    N   R IG  L G+Q              A ++ +    + +
Sbjct: 343 RMALIEFELPEWDQI---NKRDRLIGTSLTGWQDM----------KNAADLNEAAEAKLL 389

Query: 688 EFISFHAISASVELAQE 704
           E +   A  A++E+A+E
Sbjct: 390 EELRQVAKKAAIEIAKE 406


>gi|229138139|ref|ZP_04266737.1| Ribunucleotide reductase large subunit [Bacillus cereus BDRD-ST26]
 gi|228645484|gb|EEL01718.1| Ribunucleotide reductase large subunit [Bacillus cereus BDRD-ST26]
          Length = 79

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++ FK   
Sbjct: 2   YKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNA 61

Query: 568 NIRSPQQHVGVVHSSNLC 585
           N + P + +G V  SNLC
Sbjct: 62  NNQHPLKDIGTVKMSNLC 79


>gi|167754899|ref|ZP_02427026.1| hypothetical protein CLORAM_00403 [Clostridium ramosum DSM 1402]
 gi|167704949|gb|EDS19528.1| hypothetical protein CLORAM_00403 [Clostridium ramosum DSM 1402]
          Length = 710

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + VIK++     F+  K+  AI K+  A       +      I   +  +        
Sbjct: 4   KRMYVIKKDNTKELFNIQKVVTAINKS--ATRCLYKFKEGEEAQICDFVEARV------K 55

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           + ++  + I  + + VE +L  + + K+ + Y  YR 
Sbjct: 56  DFNSNEITISQMHNVVEGAL-DAINPKVAKSYRDYRN 91


>gi|220909393|ref|YP_002484704.1| ATP-cone domain-containing protein [Cyanothece sp. PCC 7425]
 gi|254768006|sp|B8HVN1|NRDR_CYAP4 RecName: Full=Transcriptional repressor NrdR
 gi|219866004|gb|ACL46343.1| ATP-cone domain protein [Cyanothece sp. PCC 7425]
          Length = 184

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G    FD SK+ R I+ AF    GK    +IRV+ ++  +  +   R L+  
Sbjct: 48  PITVIKRDGQREPFDRSKLLRGIVTAF----GKNGIANIRVEALVDEIEAELQQRALREV 103

Query: 88  KSALIVHIEDI-QDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            SA I   E + Q+     L +  + +    Y  ++  R  V    +
Sbjct: 104 TSAEIG--EAVLQNL--KELSEVAYVRFASVYRQFQSIRDFVDELNT 146


>gi|261886385|ref|ZP_06010424.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
          fetus subsp. venerealis str. Azul-94]
          Length = 43

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMA 56
          +++IKR+G +  F   KI  AI KA+ +
Sbjct: 1  MKIIKRDGSLQDFASYKIENAITKAYKS 28


>gi|119492684|ref|ZP_01623863.1| hypothetical protein L8106_00235 [Lyngbya sp. PCC 8106]
 gi|119453022|gb|EAW34193.1| hypothetical protein L8106_00235 [Lyngbya sp. PCC 8106]
          Length = 199

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   SFD SK+ R +++A      +  +    + +I   L ++ V  +    
Sbjct: 48  PITVIKRDGKRESFDRSKLLRGLIRACEKTGIETGALETVIDEIEAELQQRAVREVSSQE 107

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREY 118
              L++  E +Q   E + ++     + R++
Sbjct: 108 IGELVL--EQLQSVSEVAYVR--FASVYRKF 134


>gi|237735372|ref|ZP_04565853.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229381117|gb|EEO31208.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 710

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + VIK++     F+  K+  AI K+  A       +      I   +  +        
Sbjct: 4   KRMYVIKKDNTKELFNIQKVVTAINKS--ATRCLYKFKEGEEAQICDFVEARV------K 55

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           + ++  + I  + + VE +L  + + K+ + Y  YR 
Sbjct: 56  DFNSNEITISQMHNVVEGAL-DAINPKVAKSYRDYRN 91


>gi|74419028|gb|ABA03241.1| ribonucleoside diphosphate reductase large subunit [Enterobacteria
           phage RB15]
          Length = 86

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 4   KPYLTQVAIMLKWVCQSASANTYNDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 62

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 63  RDGSGTDDYEIETPKAE 79


>gi|320038061|gb|EFW19997.1| ribonucleotide reductase large subunit Rnr1 [Coccidioides posadasii
           str. Silveira]
          Length = 154

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           ++   W +GLKT  YYLR+ +A++  + T+     K+    V   +
Sbjct: 1   MHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARSS 46


>gi|323465717|gb|ADX69404.1| Ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus H10]
          Length = 742

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 22/134 (16%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K              K    ++ + D    + E+   +L        
Sbjct: 24  IKRDGAKYPFEIFK-------------LKMVLHNLDLDDEADAVIEKIAAKLT-----GA 65

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERS----DVRAAQSHSKSDAPIAPKLKI 147
            V  ED+    + SL + G+    + Y+ YR++           ++  +      P +  
Sbjct: 66  TVKAEDVAHAFKESLNELGYLDEAKAYIDYRKQDEKNWLKQTDTRTRLERMVNGDPTIVN 125

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 126 ENANKDSEVFSTQR 139


>gi|268318702|ref|YP_003292358.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii FI9785]
 gi|262397077|emb|CAX66091.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii FI9785]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                  S+ + +   ++    + +L    +++ 
Sbjct: 21  IKRDGSIYPFALYKIEM-------------VLDSLHLTEHEADILPAILQKLNGAKQTST 67

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               E I D    +L++ G       YV YR      R  + + K       +L +++  
Sbjct: 68  ----ERIADAFVQTLIELGFSDEANAYVDYR------REDEVNFKKQTETTNRLGRLIHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|42518223|ref|NP_964153.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii NCC 533]
 gi|41582507|gb|AAS08119.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii NCC 533]
 gi|329666534|gb|AEB92482.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii DPC 6026]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 22/136 (16%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                  S+ + +   ++    + +L    +++ 
Sbjct: 21  IKRDGSIYPFALYKIEM-------------VLDSLHLTEHEADILPAILQKLNGAKQTST 67

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
               E I D    +L++ G       YV YR  R D    +  +++   +    +++  D
Sbjct: 68  ----EKIADAFVQTLIELGFSDEANAYVDYR--REDEANFKKQTETTNRLG---RLIHHD 118

Query: 152 GTLISFNSKRLEMIVE 167
            T+++ N+ +   +  
Sbjct: 119 PTIVNENANKDSRVFS 134


>gi|227889023|ref|ZP_04006828.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850252|gb|EEJ60338.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 736

 Score = 47.8 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                  S+ + +   ++    + +L    +++ 
Sbjct: 21  IKRDGSIYPFALYKIEM-------------VLDSLHLTEHEADILPAILQKLNGAKQTST 67

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               E I D    +L++ G       YV YR      R  + + K       +L +++  
Sbjct: 68  ----EKIADAFVQTLIELGFSDEANAYVDYR------REDEVNFKKQTETTNRLGRLIHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|227500677|ref|ZP_03930726.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217264|gb|EEI82608.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 132

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
            D+ K  +     L     E      VIK++G V  F   KI R+I  A  +       +
Sbjct: 20  DDIKKDLQSLDVDLVADMLEDKLNTYVIKKSGSVEKFSKEKIERSIKDAVAS------QK 73

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           +      I  + +  +  L   N    +    +I++ ++ +L++ G+ K+ +E++ Y
Sbjct: 74  AAMTTSDIGIIVDDVIDSL--DNDPRKVYKTSEIKNYIKDALLKEGYSKVYKEFISY 128


>gi|331090823|ref|ZP_08339669.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330399682|gb|EGG79344.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 706

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 21/101 (20%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+          +   ++   ++         
Sbjct: 2   IKVIKKDGTKEDFNVQKVIVAVNKSAYRALIKFTEEDLDFICKFVEEEVQK--------- 52

Query: 88  KSALIVHIEDI---Q--DQVECSLMQSGHHKITREYVLYRE 123
                + +E+I   Q  + VE +L +     + + Y  YR 
Sbjct: 53  -----MGVEEIRIAQMHNVVEGALEKVN-PVVAKSYRDYRN 87


>gi|225388044|ref|ZP_03757768.1| hypothetical protein CLOSTASPAR_01778 [Clostridium asparagiforme
           DSM 15981]
 gi|225045897|gb|EEG56143.1| hypothetical protein CLOSTASPAR_01778 [Clostridium asparagiforme
           DSM 15981]
          Length = 710

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
             ++VIK++G    F+  K+  A+ K A  A+     +    +   ++   E        
Sbjct: 4   SEIKVIKKDGTREDFNVQKVVAAVRKSAERAMIRFSKAEITFICQFVEEKAEDMEVT--- 60

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                  + I  + + VE +L +    ++ + Y  YR 
Sbjct: 61  ------EIPIAQMHNVVEGALEKVN-PQVAKSYRDYRN 91


>gi|289582312|ref|YP_003480778.1| ATP-cone domain protein [Natrialba magadii ATCC 43099]
 gi|289531865|gb|ADD06216.1| ATP-cone domain protein [Natrialba magadii ATCC 43099]
          Length = 176

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 28  GVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
            +QV KR+G +  FD +K    I RA+ K          +    + D ++   ++  TRL
Sbjct: 48  SLQVKKRDGALEPFDRAKLRAGIERAVEK-----RDVTDTTVTSLIDQVEATLQERETRL 102

Query: 84  LQHNKSALIVH 94
           +  N+   +V 
Sbjct: 103 VSSNRIGELVS 113


>gi|113951982|gb|ABI48925.1| NrdA [Enterobacteria phage RB3]
          Length = 87

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G+K  YY  +
Sbjct: 5   KPYLTQVAIMLKWVCQSASANTYNDPQIFPKGKVPMSIMIDDM-LYGWYYGIKNFYYHNT 63

Query: 906 RSATSVEKSTLKGVDG 921
           R  +  +   ++    
Sbjct: 64  RDGSGTDDYEIETPKA 79


>gi|938282|emb|CAA49150.1| ribonucleotide reductase [Saccharomyces cerevisiae]
          Length = 45

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
           AS ELAQ+ G Y +F+GS   QG+   D                     WD LKK
Sbjct: 1   ASCELAQKDGPYETFQGSPASQGILQFDMWDQKP----------YGMWDWDNLKK 45


>gi|170077577|ref|YP_001734215.1| transcriptional regulator NrdR [Synechococcus sp. PCC 7002]
 gi|226736147|sp|B1XJ17|NRDR_SYNP2 RecName: Full=Transcriptional repressor NrdR
 gi|169885246|gb|ACA98959.1| conserved hypothetical protein TIGR00244, ATP cone domain
           [Synechococcus sp. PCC 7002]
          Length = 181

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKRNG   +FD SKI R +++A        ++     ++I   L            
Sbjct: 48  PISVIKRNGQSEAFDRSKILRGMVRACEKTTVLPSTLEAIAEEIEAQL----------QQ 97

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS-DVRAAQSHSKSDAPIAPKLK 146
           K    +    I D V   L Q       R   +YR+ +  D          D      L 
Sbjct: 98  KPKRSITTAQIGDLVLHRLRQESEVAYVRFASVYRQFQGVDDFIETLSHLQDNAEQANLW 157

Query: 147 IMMDDGTLISFNS 159
           I   +    S + 
Sbjct: 158 IQTLNEDEESEDL 170


>gi|257053405|ref|YP_003131238.1| transcriptional regulator NrdR [Halorhabdus utahensis DSM 12940]
 gi|256692168|gb|ACV12505.1| ATP-cone domain protein [Halorhabdus utahensis DSM 12940]
          Length = 160

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QV KR+G +  FD  K+   I +A         + +  V  I   LTE+         
Sbjct: 48  SLQVKKRDGAIEPFDREKLRAGIERAVEKRPVDEQAVTAIVDAIHDALTER--------- 98

Query: 88  KSALIVHIEDIQDQVECSL 106
               IV    I D V   L
Sbjct: 99  -EGRIVTTTQIGDLVSEHL 116


>gi|332981324|ref|YP_004462765.1| ATP-cone domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332699002|gb|AEE95943.1| ATP-cone domain protein [Mahella australiensis 50-1 BON]
          Length = 156

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
             Y   E+I  + VIK++G    FD  KI   I+KA      K       ++D++ ++ +
Sbjct: 39  TTYEKVERIPLM-VIKKDGRREPFDIDKIKNGIIKAC----EKRPVSMDDIEDVVSDIEK 93

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           Q  T +         +   +I + V   L         R   +YR+ R 
Sbjct: 94  QVYTDVKSE------ITSHEIGEMVMKHLKDLDEVAYVRFASVYRQFRD 136



 Score = 45.1 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 115 TREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS--- 171
             EY + R  R  V   +  +  +      L ++  DG    F+  +++  + +AC    
Sbjct: 19  AEEYTIIRRRRECVECGKRFTTYEKVERIPLMVIKKDGRREPFDIDKIKNGIIKACEKRP 78

Query: 172 ----GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                ++DV S  +  + Y ++   ++  ++   ++   + L
Sbjct: 79  VSMDDIEDVVSD-IEKQVYTDVKSEITSHEIGEMVMKHLKDL 119


>gi|86749752|ref|YP_486248.1| transcriptional regulator NrdR [Rhodopseudomonas palustris HaA2]
 gi|119372218|sp|Q2IWS3|NRDR_RHOP2 RecName: Full=Transcriptional repressor NrdR
 gi|86572780|gb|ABD07337.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           HaA2]
          Length = 160

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     EQ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVEPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     I  E I + V   L +     +   YV +     + R A+ 
Sbjct: 93  RELESGGEADISSETIGEIVMDHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|325263812|ref|ZP_08130545.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
 gi|324030850|gb|EGB92132.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
          Length = 706

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           + V+K++G    F+  K+  A+ K A+ A+        I+  D   +   + V   +Q  
Sbjct: 2   MHVVKKDGTKEDFNVQKVVVAVNKSAYRAL--------IKFTDEELDYICRFVEEKVQSM 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
             + I  I ++ + VE +L +     + + Y  YR 
Sbjct: 54  AISDIP-IAEMHNVVEGALEKVN-PTVAKSYRDYRN 87


>gi|296124322|ref|YP_003632100.1| ATP-cone domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016662|gb|ADG69901.1| ATP-cone domain protein [Planctomyces limnophilus DSM 3776]
          Length = 154

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   ++VIK++G    FD  KI++ + KA      K      R+++II  +  +      
Sbjct: 44  EESPIRVIKKDGSRVPFDRDKIAQGLEKACY----KRPISPERIEEIISAIERELYENFD 99

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           +   S       +I ++V   L    H    R   +YRE
Sbjct: 100 REVPSR------EIGERVMEQLRTLDHVAFVRFASVYRE 132



 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ------D 175
           R  R  +  A+  +  +      ++++  DG+ + F+  ++   +E+AC          +
Sbjct: 25  RRRRECLACARRFTTYEKIEESPIRVIKKDGSRVPFDRDKIAQGLEKACYKRPISPERIE 84

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                +  E Y+N    +   ++   ++   RTL
Sbjct: 85  EIISAIERELYENFDREVPSREIGERVMEQLRTL 118


>gi|146341345|ref|YP_001206393.1| transcriptional regulator NrdR [Bradyrhizobium sp. ORS278]
 gi|189030513|sp|A4YW96|NRDR_BRASO RecName: Full=Transcriptional repressor NrdR
 gi|146194151|emb|CAL78172.1| conserved hypothetical protein with ATP cone domain [Bradyrhizobium
           sp. ORS278]
          Length = 161

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+     RS+   + ++ +    V  L 
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQISLRKRSVD-PERVEKMVSAIVRELE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +S   V  E I + V   L       +   YV +     + R A+ 
Sbjct: 97  SGGESE--VSSEAIGEIVMEHLRDLD--DVA--YVRFASVYRNFREAKD 139


>gi|325479048|gb|EGC82148.1| hypothetical protein HMPREF9290_0799 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 132

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
              VIK++G V  F   KI R+I  A  A + K    S  +  I+ ++ +   +   +  
Sbjct: 43  NTYVIKKSGSVEKFAKEKIERSIKNA--AGDNKYDLNSSDLAIIVGDVIKALDSDPRKVY 100

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           K++      +I++ ++ +L++ G+ ++ + ++ Y
Sbjct: 101 KTS------EIKNYIKDALIKEGYSQVYKSFISY 128


>gi|169838795|ref|ZP_02871983.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 68

 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           S   IE IPD++K ++ T+F+I P   IE A+R QKW+DQA S N+YL+    + +D 
Sbjct: 2   STKYIEAIPDEIKSVYKTSFQILPYAFIEVAARAQKWVDQAISRNMYLE---TRDIDE 56


>gi|328464507|gb|EGF35886.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           helveticus MTCC 5463]
          Length = 739

 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K              K    ++ + D    + E+   +L        
Sbjct: 21  IKRDGAKYPFEIFK-------------LKMVLHNLDLDDEADAVIEKIAAKLT-----GA 62

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + YV YR++
Sbjct: 63  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQ 95


>gi|148255997|ref|YP_001240582.1| transcriptional regulator NrdR [Bradyrhizobium sp. BTAi1]
 gi|189030512|sp|A5EKI2|NRDR_BRASB RecName: Full=Transcriptional repressor NrdR
 gi|146408170|gb|ABQ36676.1| hypothetical protein BBta_4648 [Bradyrhizobium sp. BTAi1]
          Length = 161

 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+     RS+   + ++ +    V  L 
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQISLRKRSVD-PERVEKMVSAIVRELE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +S   V  E I + V   L       +   YV +     + R A+ 
Sbjct: 97  SGGESE--VSSEAIGEIVMEHLRDLD--DVA--YVRFASVYRNFREAKD 139


>gi|260102171|ref|ZP_05752408.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DSM 20075]
 gi|260084061|gb|EEW68181.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DSM 20075]
          Length = 741

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K              K    ++ + D    + E+   +L        
Sbjct: 23  IKRDGAKYPFEIFK-------------LKMVLHNLDLDDEADAVIEKIAAKLT-----GA 64

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + YV YR++
Sbjct: 65  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQ 97


>gi|154502809|ref|ZP_02039869.1| hypothetical protein RUMGNA_00623 [Ruminococcus gnavus ATCC 29149]
 gi|153796692|gb|EDN79112.1| hypothetical protein RUMGNA_00623 [Ruminococcus gnavus ATCC 29149]
          Length = 706

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+          +  I + + E+  T  +Q  
Sbjct: 2   IRVIKKDGTKEDFNVQKVVVAVNKSAYRALIKFTDEE---LDYICRFVEEKVQTLGIQD- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                V I ++ + VE +L +     + + Y  YR 
Sbjct: 58  -----VPIAEMHNVVEGALEKVN-PVVAKSYRDYRN 87


>gi|86609406|ref|YP_478168.1| transcriptional regulator NrdR [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119372240|sp|Q2JK90|NRDR_SYNJB RecName: Full=Transcriptional repressor NrdR
 gi|86557948|gb|ABD02905.1| transcriptional regulator, NrdR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   SF+ +KI + +M+A              V +I + L  +    +    
Sbjct: 48  PIMVIKRDGSRESFNRNKILQGVMRACQKTPVTVRQMEELVNEIEEKLQLEDAQEVTSLR 107

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
              +++  E +Q      L +  + +      +YR+ +          + + P+   L+ 
Sbjct: 108 IGEMVL--ERLQ-----HLSEVAYVRFA---SVYRQFQGIKDFVNELEQLEPPLRRDLER 157

Query: 148 MMDD 151
           ++ D
Sbjct: 158 LLQD 161


>gi|153809895|ref|ZP_01962563.1| hypothetical protein RUMOBE_00276 [Ruminococcus obeum ATCC 29174]
 gi|149834073|gb|EDM89153.1| hypothetical protein RUMOBE_00276 [Ruminococcus obeum ATCC 29174]
          Length = 38

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMA 56
           QV+KR+G +  F  +KI+ AI KAF A
Sbjct: 5  FQVVKRDGEIAEFQMAKITSAIDKAFDA 32


>gi|284051285|ref|ZP_06381495.1| transcriptional regulator NrdR [Arthrospira platensis str. Paraca]
 gi|291571970|dbj|BAI94242.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 179

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++  + VIKR+G   SFD SK+ R +++A        +     ++DI   L ++    + 
Sbjct: 45  ELVPLTVIKRDGRRESFDGSKLLRGLVRACEKTGIASSELETMIEDIEAELQQRATREVS 104

Query: 85  QHNKSALIVH 94
               S L++ 
Sbjct: 105 SPEISELVLD 114


>gi|170760599|ref|YP_001787395.1| hypothetical protein CLK_1457 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407588|gb|ACA55999.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 92

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IK++G + +FD SK+  +I  +    EG   + S  +  I+K++          + K
Sbjct: 1   MEIIKKSGKLEAFDESKLKTSIANSARDTEGVHLTES-DLNSIVKDIKNIVKNIRKDNEK 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           ++    I  I D     L ++  H++ + Y+ +  ++
Sbjct: 60  TSSYELIGIIND----VLKKNKFHEVLKAYIAFNYKK 92


>gi|91977143|ref|YP_569802.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisB5]
 gi|119372220|sp|Q136T8|NRDR_RHOPS RecName: Full=Transcriptional repressor NrdR
 gi|91683599|gb|ABE39901.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           BisB5]
          Length = 160

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     EQ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SVQISLRKRPVEPERVEQLVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S+    I  E I + V   L +     +   YV +     + R A+ 
Sbjct: 93  RELESSGEADISSETIGEIVMDHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|170289638|ref|YP_001736454.1| ATP-cone domain-containing protein [Candidatus Korarchaeum
          cryptofilum OPF8]
 gi|170173718|gb|ACB06771.1| ATP-cone domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 115

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
           +V KRNG    F   KI  A++KA  +VE       
Sbjct: 32 TKVRKRNGKEEDFSKMKIVSALIKAGSSVELADKIAE 68


>gi|313117007|ref|YP_004038131.1| transcriptional regulator NrdR [Halogeometricum borinquense DSM
          11551]
 gi|312294959|gb|ADQ68995.1| transcriptional regulator NrdR [Halogeometricum borinquense DSM
          11551]
          Length = 169

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
          +QV KR+G +  FD  K+   I +A         +    ++D+ + L  +
Sbjct: 49 LQVKKRDGRIEPFDREKLRGGIERAVEKRPVDDDAVESLIEDVERELAGR 98



 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R  R   R +   +  + P    L++   DG +  F+ ++L   +E A    + V    V
Sbjct: 26  RRRRECKRCSFRFTTYERPEWETLQVKKRDGRIEPFDREKLRGGIERAVEK-RPVDDDAV 84

Query: 182 LS 183
            S
Sbjct: 85  ES 86


>gi|227543860|ref|ZP_03973909.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri CF48-3A]
 gi|300909603|ref|ZP_07127064.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri SD2112]
 gi|227186157|gb|EEI66228.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri CF48-3A]
 gi|300893468|gb|EFK86827.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri SD2112]
          Length = 744

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI   ++ A  A E                 ++     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKI-NLVLNALNADE---------------QTSQSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           L    +   V  + I D     L+ + H ++ + Y  YR+   +  A  ++ +
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQHDEEAFAEATNPQ 108


>gi|331085664|ref|ZP_08334747.1| hypothetical protein HMPREF0987_01050 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406587|gb|EGG86092.1| hypothetical protein HMPREF0987_01050 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 754

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+VIK++G    F+  K+  A+ K+  A           ++ I K + E+     ++   
Sbjct: 50  VKVIKKDGTSEEFNVQKVVVAVNKS--AYRALIQFTDAELEFICKFVEEKVRDMGVEE-- 105

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               V I ++ + VE +L +     + + Y  YR 
Sbjct: 106 ----VRIAEMHNIVEGALEKVNPL-VAKSYRDYRN 135


>gi|299135085|ref|ZP_07028276.1| ATP-cone domain protein [Afipia sp. 1NLS2]
 gi|298590062|gb|EFI50266.1| ATP-cone domain protein [Afipia sp. 1NLS2]
          Length = 158

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVDPERVEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     +  E I + V   L Q     +   YV +     D R A+ 
Sbjct: 93  RELESGGEAEVSSEAIGEIVMEHLRQLD--DVA--YVRFASVYRDFREAKD 139


>gi|148544541|ref|YP_001271911.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri DSM 20016]
 gi|184153904|ref|YP_001842245.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri JCM 1112]
 gi|227363031|ref|ZP_03847168.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri MM2-3]
 gi|325682862|ref|ZP_08162378.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri MM4-1A]
 gi|148531575|gb|ABQ83574.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri DSM 20016]
 gi|183225248|dbj|BAG25765.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri JCM 1112]
 gi|227071915|gb|EEI10201.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri MM2-3]
 gi|324977212|gb|EGC14163.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri MM4-1A]
          Length = 744

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI   ++ A  A E                 ++     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKI-NLVLNALNADE---------------QTSQSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           L    +   V  + I D     L+ + H ++ + Y  YR+   +  A  ++ +
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQHDEEAFAEATNPQ 108


>gi|194466729|ref|ZP_03072716.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri 100-23]
 gi|194453765|gb|EDX42662.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri 100-23]
          Length = 744

 Score = 46.3 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI   ++ A  A E                 ++     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKI-NLVLNALNADE---------------QTSQSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           L    +   V  + I D     L+ + H ++ + Y  YR+   +  A  ++ +
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQHDEEAFAEATNPQ 108


>gi|209524016|ref|ZP_03272568.1| ATP-cone domain protein [Arthrospira maxima CS-328]
 gi|209495688|gb|EDZ95991.1| ATP-cone domain protein [Arthrospira maxima CS-328]
          Length = 176

 Score = 46.3 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++  + VIKR+G   SFD SK+ R +++A        +     ++DI   L ++    + 
Sbjct: 45  ELVPLTVIKRDGRRESFDGSKLLRGLVRACEKTGIASSELETMIEDIEAELQQRATREVS 104

Query: 85  QHNKSALIVH 94
               S L++ 
Sbjct: 105 SPEISELVLD 114


>gi|15211882|emb|CAC51111.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 47

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            D  + + L+ I   A   G+KT YY R++  T 
Sbjct: 6   KDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 39


>gi|18310537|ref|NP_562471.1| hypothetical protein CPE1555 [Clostridium perfringens str. 13]
 gi|168209373|ref|ZP_02634998.1| hypothetical protein AC1_1954 [Clostridium perfringens B str. ATCC
           3626]
 gi|18145218|dbj|BAB81261.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|170712531|gb|EDT24713.1| hypothetical protein AC1_1954 [Clostridium perfringens B str. ATCC
           3626]
          Length = 89

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G +  F   K+S ++  A   +        I +      + +     L    K
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNAASDLNFTLNKSDINI------IAKDVEETLKSIRK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   ++   V  +L       + R YV YR+
Sbjct: 55  DNGKTSSYEVIGVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|323448182|gb|EGB04084.1| hypothetical protein AURANDRAFT_67511 [Aureococcus anophagefferens]
          Length = 739

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-----VSSKIVLSETYKNMYDGLSESDLETA 201
           +   D +  + +  ++    ++  +G        V    +  +    MY G+   +L+  
Sbjct: 299 VANRDNSRETVSFDKIAKRFKQLINGDSKKKPLKVDWISLTQKICGEMYSGVHTHELDEL 358

Query: 202 LIFSSRTLIEK 212
              +  +LI +
Sbjct: 359 AAQTCASLITE 369


>gi|325661865|ref|ZP_08150486.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471843|gb|EGC75060.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 706

 Score = 45.9 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+VIK++G    F+  K+  A+ K+  A           ++ I K + E+     ++   
Sbjct: 2   VKVIKKDGTSEEFNVQKVVVAVNKS--AYRALIQFTDAELEFICKFVEEKVRDMGVEE-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
               V I ++ + VE +L +     + + Y  YR 
Sbjct: 58  ----VRIAEMHNIVEGALEKVNPL-VAKSYRDYRN 87


>gi|217077585|ref|YP_002335303.1| transcriptional regulator NrdR [Thermosipho africanus TCF52B]
 gi|226736148|sp|B7ID85|NRDR_THEAB RecName: Full=Transcriptional repressor NrdR
 gi|217037440|gb|ACJ75962.1| transcriptional regulator NrdR [Thermosipho africanus TCF52B]
          Length = 151

 Score = 45.9 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
          VIK++G    FD SKI   IMKA              V D++  +
Sbjct: 51 VIKKDGRREKFDRSKILSGIMKACEKTNVTLEEMEKLVDDVVNQI 95


>gi|330994526|ref|ZP_08318450.1| Putative adenosylcobalamin-dependent ribonucleoside-triphosphate
           reductase [Gluconacetobacter sp. SXCC-1]
 gi|329758380|gb|EGG74900.1| Putative adenosylcobalamin-dependent ribonucleoside-triphosphate
           reductase [Gluconacetobacter sp. SXCC-1]
          Length = 799

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 109/356 (30%), Gaps = 78/356 (21%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGG---LGNDWTPVRGLGAHIHGTNGKS-QGVIPFLKVA 431
           + D   G   A++    +A        L  D++ +R  G+ I G  G+   G +  L+  
Sbjct: 220 IDDSREGWGKAVEMIEAMAFRGARERTLVLDFSAIRRAGSPIAGMQGRPASGPVSLLRGL 279

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWH--IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL- 488
            +    V +      A    +  W   + V+ +L +    G  RR       +    D+ 
Sbjct: 280 LNVRRHVIE-----AARAGGMPLWEQALRVDHYLSVEVQVGGARRAARMATKSWRDADVL 334

Query: 489 -FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            F++   +   WT  +   V    + +            R  +         + A A++ 
Sbjct: 335 RFIRAKEEGGLWT--ANHSVMVDAEFW------------RGVNDPAHTGPLAVHARAVFA 380

Query: 548 KMLTMLFETGHPWITFKDPCN-------IRSPQQHVGV---------------------- 578
           +     +  G P     D           R P    G                       
Sbjct: 381 EATRCAWINGEPGFINGDRLEDSRTGSARRKPVHADGRDFRSHRYQATEGATLLADLARR 440

Query: 579 ------VHSSNLCTEITLNSSSEETAVCN----------LGSINLLAHFANNQFDYD-KL 621
                   ++N C EITL+ +     + +          L ++       +    +D ++
Sbjct: 441 ATTAHFPVTTNPCGEITLHVTGGYCVIGDFAPLLACPVPLEAVTPGQVPTDTAQTWDARV 500

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL-HIPYAS 676
             ++R  VR L     ++    E+ +++N     IG+G  G      +   + +  
Sbjct: 501 RDSVRLGVRFLLRANRMDALYGEEVRRTN----RIGIGPTGLHEWAWMRFGLDFHD 552


>gi|161506765|ref|YP_001576715.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           helveticus DPC 4571]
 gi|160347754|gb|ABX26428.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DPC 4571]
          Length = 739

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 22/134 (16%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K              K    ++ + +    + E+   +L        
Sbjct: 21  IKRDGAKYPFEIFK-------------LKMGLHNLDLDNEADAVIEKIAAKLT-----GA 62

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERS----DVRAAQSHSKSDAPIAPKLKI 147
            V  ED+    + SL + G+    + YV YR++           ++  +      P +  
Sbjct: 63  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQDEKNWLKQTDTRTRLERMVNGDPTIVN 122

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 123 ENANKDSEVFSTQR 136


>gi|110801578|ref|YP_698843.1| hypothetical protein CPR_1525 [Clostridium perfringens SM101]
 gi|110682079|gb|ABG85449.1| hypothetical protein CPR_1525 [Clostridium perfringens SM101]
          Length = 89

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G +  F   K+S ++  A   +        I +      + +     L +  K
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNAASDLNFTLNKSDINI------IAKDVEETLKKIRK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   ++   V  +L       + R YV YR+
Sbjct: 55  DNGETSSYEVIGVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|168206781|ref|ZP_02632786.1| hypothetical protein AC3_2016 [Clostridium perfringens E str.
           JGS1987]
 gi|168213524|ref|ZP_02639149.1| hypothetical protein AC5_1925 [Clostridium perfringens CPE str.
           F4969]
 gi|168217701|ref|ZP_02643326.1| hypothetical protein AC7_1808 [Clostridium perfringens NCTC 8239]
 gi|169342837|ref|ZP_02629532.2| hypothetical protein CPC_1793 [Clostridium perfringens C str.
           JGS1495]
 gi|182624720|ref|ZP_02952501.1| hypothetical protein CJD_2119 [Clostridium perfringens D str.
           JGS1721]
 gi|169299094|gb|EDS81166.1| hypothetical protein CPC_1793 [Clostridium perfringens C str.
           JGS1495]
 gi|170661803|gb|EDT14486.1| hypothetical protein AC3_2016 [Clostridium perfringens E str.
           JGS1987]
 gi|170714941|gb|EDT27123.1| hypothetical protein AC5_1925 [Clostridium perfringens CPE str.
           F4969]
 gi|177910117|gb|EDT72511.1| hypothetical protein CJD_2119 [Clostridium perfringens D str.
           JGS1721]
 gi|182380236|gb|EDT77715.1| hypothetical protein AC7_1808 [Clostridium perfringens NCTC 8239]
          Length = 89

 Score = 45.5 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G +  F   K+S ++  A   +        I +      + +     L    K
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNAASDLNFTLNKSDINI------IAKDVEETLKSIRK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   ++   V  +L       + R YV YR+
Sbjct: 55  DNGETSSYEVIGVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|167579175|ref|ZP_02372049.1| hypothetical protein BthaT_13600 [Burkholderia thailandensis TXDOH]
          Length = 169

 Score = 45.5 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +     S             ++SCF+  +  P  L         AL E  +
Sbjct: 51  ARRFYRNLLNGALGASRVMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 110

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
                  +G D++ +    A        S GV   L+          +   R+ A 
Sbjct: 111 ALAMGADIGYDFSDIPPASARPDSGQPASPGVCAALERFERIGAQAGERDGRRRAQ 166


>gi|167948816|ref|ZP_02535890.1| hypothetical protein Epers_20772 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 67

 Score = 45.5 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 867 IDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQA S  + L E  +      IY +AW +GLK     R  
Sbjct: 1   MDQAISKTINLPERLNFDDFASIYEEAWRLGLKGCTCYRPN 41


>gi|302337970|ref|YP_003803176.1| ATP-cone domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635155|gb|ADK80582.1| ATP-cone domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 161

 Score = 45.5 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 17/99 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMK-----A-----FMAVEGKGASRSIRVQD 70
           + K + V+KR+G +  ++P+K    I+ A+ K     A     F A+E + A  +    +
Sbjct: 45  EEKPIMVVKRDGRLEPYEPAKLERGINIAMEKRPIGQATRESLFQAIEDEVAYGARNSHE 104

Query: 71  IIKNLTEQTVTRLLQHNKSALIV---HIEDIQDQVECSL 106
           I      + V R L        V    +  + D VE  L
Sbjct: 105 IATKELGEIVLRRLYKVDKVAYVRFASVYRMFDNVEEFL 143


>gi|227517198|ref|ZP_03947247.1| response regulator [Enterococcus faecalis TX0104]
 gi|227075349|gb|EEI13312.1| response regulator [Enterococcus faecalis TX0104]
          Length = 242

 Score = 45.5 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKEPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPAALFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|15679535|ref|NP_276652.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622659|gb|AAB86013.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 776

 Score = 45.5 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 107/620 (17%), Positives = 190/620 (30%), Gaps = 100/620 (16%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++ ++G    F+ ++L   +    + L   +S+ V SE  +++Y+G++  ++   L++ S
Sbjct: 24  VLKNNGVREKFSHEKLVKSLLNLGASL--WTSENVASEVARSVYNGITTKEI-KILVYDS 80

Query: 207 RTLIEKEPNYAKVTA-RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              +++E     + A R  +   R ++ T   KK +     E      E   R I   V 
Sbjct: 81  LRKVDEELADRYLAANRLRVRTSRDKIETFDQKKIEDNLIRETGA--SEDVAREIATEVW 138

Query: 266 ARLLHESMMDFDLVYL-ANDLKYERDFAFEYLGLQILYDRYF-----------LHINGSR 313
             L        ++ YL A  ++   +      GL+ L  RY            L  NGSR
Sbjct: 139 REL-----KKLNVEYLTAPMIREVVNTKLIEHGLETLRKRYTRLGIPVYNITNLIENGSR 193

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCF 372
                      A  +   ET  +  A E     +  H + S     + SG  H      F
Sbjct: 194 D---------NANMIHNPETVHKYVADEALKQYTLLHILPSRLADAHMSGDIHIHDLEFF 244

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                + L         + +              V G G H     G  + +   +  A 
Sbjct: 245 AARPLNCLQHDLRLFIRHGL-------------RVDGTGDH-TSVAGPPKHLETLMNHAG 290

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +  +A  Q     G   +    +       L   K     +    ++N A       +  
Sbjct: 291 EIMLASQQNMS-GGQAMSLWNVFVAPFASGLSYEKIKQAVQMFIFNLNMAYAARGSQVPF 349

Query: 493 VTQNAGWTLFSPDEVSDLH-------DLYGKEFEIA--------YENYERQADRGEIKVF 537
            + N  + +    E    +        +YG   E A            E  AD       
Sbjct: 350 TSINLEFGVPEFLEDEPAYGPRGEYAGVYGDFAEEARLLTRAFTEVLLEGDADGKPHLFP 409

Query: 538 RKISA--VALWR--------KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS-----S 582
             I +     +R         +  +  + G  +              ++G   S     +
Sbjct: 410 NTIYSLRRETFRGEFDEELSLVHELASKYGTAYFINMLADYRGKMANYMGCRTSLADNWT 469

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL-------DNV 635
               +  L + +      NL  I   +   +  F+Y  L   I  AV VL          
Sbjct: 470 GDWEKDCLRTGNLAYITLNLPRIAYQSRDDDELFEY--LDEYIDMAVEVLRIRRSQAQRC 527

Query: 636 IDINCHTIEKAKKSNHTHR-------AIGLGLMGFQSAL-HLLHIPYASPEAVEIADESM 687
           +D + H +    +     R        +  G  G    L + L     SPEA       +
Sbjct: 528 LD-DYHLLPFLSQEIDGERYYRIENATMSFGFTGLNEMLEYHLGAGIQSPEANRFGLRVI 586

Query: 688 EFISFHAISASVELAQERGA 707
           E I+  A     EL +E G 
Sbjct: 587 EHINERA----AELKKETGW 602


>gi|256958468|ref|ZP_05562639.1| sensory transduction protein lytT [Enterococcus faecalis DS5]
 gi|256963026|ref|ZP_05567197.1| sensory transduction protein lytT [Enterococcus faecalis HIP11704]
 gi|257078220|ref|ZP_05572581.1| sensory transduction protein lytT [Enterococcus faecalis JH1]
 gi|294779139|ref|ZP_06744549.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307270488|ref|ZP_07551787.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273693|ref|ZP_07554921.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|256948964|gb|EEU65596.1| sensory transduction protein lytT [Enterococcus faecalis DS5]
 gi|256953522|gb|EEU70154.1| sensory transduction protein lytT [Enterococcus faecalis HIP11704]
 gi|256986250|gb|EEU73552.1| sensory transduction protein lytT [Enterococcus faecalis JH1]
 gi|294453772|gb|EFG22164.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306509706|gb|EFM78748.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306513189|gb|EFM81822.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|315034761|gb|EFT46693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315146509|gb|EFT90525.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA-LIVHIEDI 98
            F+  KI++ I KA   +       +       + +  Q   R+         +V +E+ 
Sbjct: 102 PFEEEKITQVIEKASKEMGQAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEER 161

Query: 99  Q----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q                + +E  L  +   K  R ++L    R+ ++  Q          
Sbjct: 162 QLSIFVDQQVYKMTGTLNSIEQKLPAALFIKTHRSFIL---NRTKIQEIQPWFN------ 212

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L++++ +G+ +  +   ++   E+ 
Sbjct: 213 NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|226310972|ref|YP_002770866.1| hypothetical protein BBR47_13850 [Brevibacillus brevis NBRC 100599]
 gi|226093920|dbj|BAH42362.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 753

 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 111/356 (31%), Gaps = 40/356 (11%)

Query: 374 TTVPDDLYGIFGALQENAMLA-----KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D   G   +L+    +      ++   +   +  VR  G  +    G + G  P  
Sbjct: 201 IYVGDSKEGWVESLRLYLQILTDSTYEHIHTVKISYNSVRPKGERLKRFGGTASGHEPLR 260

Query: 429 KVANDTAVAV-NQGGKRKGAVCA-------YLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           ++       + NQ  +    + +             +D+   +      G  RR      
Sbjct: 261 EMFEGIDKVLKNQIDQHLAPIESDEKGYGKIRPIHILDIGNLIGANVVVGGVRRTAEIFL 320

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
             +   +  + +   N  WT    +    + +L G+   + ++  +   D       R++
Sbjct: 321 FDHDDYECMLAKYGINGFWTEDQLNHHRRVGELLGEHKPVWFDTIQNVGDGRVGLDHRRM 380

Query: 541 ----------SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                             + T++   G P     +  N R P          N C EI L
Sbjct: 381 SNNSIAFTKQPTKPFLNLVFTLMQLEGEPGFINLEEANRRRPNA-----EGLNPCAEILL 435

Query: 591 NSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +S      VCNL ++NL+    +        D D L    R + R    +  +    +  
Sbjct: 436 DS----YGVCNLTTVNLVEFVKDRGDSSKYLDLDGLLEAQRKSARAGLRMTLVTLE-LPH 490

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
                   R +G  L G + AL  L   Y   + +E+  +  +     A   + EL
Sbjct: 491 WDTVQQRDRLLGTSLTGVKDALASLG--YTEEQELELLRQLGDAARDEANRYAYEL 544


>gi|227554612|ref|ZP_03984659.1| response regulator [Enterococcus faecalis HH22]
 gi|227176289|gb|EEI57261.1| response regulator [Enterococcus faecalis HH22]
          Length = 201

 Score = 45.1 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA-LIVHIEDI 98
            F+  KI++ I KA   +       +       + +  Q   R+         +V +E+ 
Sbjct: 61  PFEEEKITQVIEKASKEMGQAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEER 120

Query: 99  Q----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q                + +E  L  +   K  R ++L    R+ ++  Q          
Sbjct: 121 QLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN------ 171

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L++++ +G+ +  +   ++   E+ 
Sbjct: 172 NTLQVILTNGSKVPVSRSYVKEFKEKL 198


>gi|315150813|gb|EFT94829.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPAALFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|330836647|ref|YP_004411288.1| Transcriptional repressor nrdR [Spirochaeta coccoides DSM 17374]
 gi|329748550|gb|AEC01906.1| Transcriptional repressor nrdR [Spirochaeta coccoides DSM 17374]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           ++VIKR+G +  F+  KI R +    +A +    +    ++ I++N+ +  V
Sbjct: 48 PLRVIKRDGRIEDFNLDKIERGVR---IATDKLKVTPET-IEQILQNIEDSVV 96


>gi|76803439|ref|YP_327708.1| transcriptional regulator NrdR [Natronomonas pharaonis DSM 2160]
 gi|114152101|sp|Q3IM07|NRDR_NATPD RecName: Full=Transcriptional repressor NrdR
 gi|76559254|emb|CAI50861.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 27  KGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           K +QV KR+G + SFD  K    I RA+ K      G   +    + D I++  +    R
Sbjct: 47  KSLQVKKRDGTIESFDQQKLRTGIERAVEK-----RGVAETTVTALVDDIESELQDREAR 101

Query: 83  LLQHNKSALIVH 94
           ++  +    +V 
Sbjct: 102 IVSSSLIGELVS 113


>gi|315164342|gb|EFU08359.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
          Length = 242

 Score = 45.1 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA-LIVHIEDI 98
            F+  KI+R I KA   +       +       + +  Q   R+         +V +E+ 
Sbjct: 102 PFEEEKITRVIEKASKEMGQAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEER 161

Query: 99  Q----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q                + +E  L  +   K  R ++L    R+ ++  Q          
Sbjct: 162 QLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN------ 212

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L++++ +G+ +  +   ++   E+ 
Sbjct: 213 NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|313617787|gb|EFR90011.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           innocua FSL S4-378]
          Length = 42

 Score = 45.1 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           KL  ++  AW  GLKTTYY+RS      E
Sbjct: 8   KLLELHMTAWNEGLKTTYYVRSNDIDVEE 36


>gi|110800017|ref|YP_696240.1| hypothetical protein CPF_1806 [Clostridium perfringens ATCC 13124]
 gi|110674664|gb|ABG83651.1| hypothetical protein CPF_1806 [Clostridium perfringens ATCC 13124]
          Length = 89

 Score = 45.1 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G +  F   K+S ++  A               +  I  + +     L    K
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNAA------SDLNFTLNKSYINIIAKDVEETLKSIRK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   ++   V  +L       + R YV YR+
Sbjct: 55  DNGKTSSYEVIGVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|225568232|ref|ZP_03777257.1| hypothetical protein CLOHYLEM_04306 [Clostridium hylemonae DSM
           15053]
 gi|225162951|gb|EEG75570.1| hypothetical protein CLOHYLEM_04306 [Clostridium hylemonae DSM
           15053]
          Length = 709

 Score = 45.1 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+K++G    F+  K+  A+ K+         +     ++ +  +      ++   N 
Sbjct: 5   VKVVKKDGTKEEFNVQKVVVAVNKSA------YRALVKFTEEELGFICSFVEEKVDARNV 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
           +   + I ++ + VE +L +     + + Y  YR 
Sbjct: 59  AE--IPIAEMHNVVEGALEKVN-PVVAKSYRDYRN 90


>gi|254469258|ref|ZP_05082663.1| transcriptional regulator NrdR [Pseudovibrio sp. JE062]
 gi|211961093|gb|EEA96288.1| transcriptional regulator NrdR [Pseudovibrio sp. JE062]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V      R +  + I     E+ V+ L+
Sbjct: 33  QLRELTVIKRNGRRVPFDREKL-------MRSVLIATRKRPVEPERI-----ERMVSGLV 80

Query: 85  QHNKSALIVHI--EDIQDQV-E--CSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           +  +S+    +  EDI   V E   +L    + +    Y  +RE  +    A     SDA
Sbjct: 81  RQLESSGESDVVAEDIGHLVMEGLKTLDDVAYVRFASVYKNFRE--AKDFEALLDELSDA 138

Query: 140 PIAPKLK 146
            + P + 
Sbjct: 139 DVDPLMM 145


>gi|328947942|ref|YP_004365279.1| NrdR family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328448266|gb|AEB13982.1| Transcriptional repressor nrdR [Treponema succinifaciens DSM 2489]
          Length = 152

 Score = 44.7 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K   V+KR+G    FD  K+++ I +A          +     D I  +  +      
Sbjct: 45  EEKPFMVVKRDGRRQPFDIKKVAKGIERA--------LEKRPVSTDFIDLIVNEIEDEAY 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              K    +  E+I + V   L  +   K+   Y+    +YR 
Sbjct: 97  TAGKLKREISTEEIGELVLKKL--NSVDKVA--YIRFASVYRH 135


>gi|255974194|ref|ZP_05424780.1| sensory transduction protein lytT [Enterococcus faecalis T2]
 gi|307284778|ref|ZP_07564934.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|255967066|gb|EET97688.1| sensory transduction protein lytT [Enterococcus faecalis T2]
 gi|306503037|gb|EFM72294.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA-LIVHIEDI 98
            F+  KI++ I KA   +       +       + +  Q   R+         +V +E+ 
Sbjct: 102 PFEEEKITQVIEKASKEMGQAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEER 161

Query: 99  Q----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q                + +E  L  +   K  R ++L    R+ ++  Q          
Sbjct: 162 QLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN------ 212

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L++++ +G+ +  +   ++   E+ 
Sbjct: 213 NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|283796125|ref|ZP_06345278.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|291076340|gb|EFE13704.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|295092236|emb|CBK78343.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium cf.
           saccharolyticum K10]
          Length = 710

 Score = 44.7 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIK++G    F+  K+  A+ K   + E      S    + I    E+    L   
Sbjct: 4   SEIKVIKKDGTREDFNVQKVVVAVNK---SAERAMIQFSQAELNFICQFVEEKAEAL--- 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                 + I  + + VE +L +     + + Y  YR 
Sbjct: 58  --GTAEIPIAQMHNLVEGALERVNPL-VAKSYRDYRN 91


>gi|255026985|ref|ZP_05298971.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J2-003]
          Length = 43

 Score = 44.7 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           KL  ++  AW  GLKTTYY+RS      E
Sbjct: 9   KLLELHMTAWNEGLKTTYYVRSNDIDVEE 37


>gi|29377644|ref|NP_816798.1| response regulator [Enterococcus faecalis V583]
 gi|257083137|ref|ZP_05577498.1| sensory transduction protein lytT [Enterococcus faecalis Fly1]
 gi|257417314|ref|ZP_05594308.1| sensory transduction protein lytT [Enterococcus faecalis AR01/DG]
 gi|257418032|ref|ZP_05595026.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420366|ref|ZP_05597356.1| two component system response regulator [Enterococcus faecalis X98]
 gi|307288368|ref|ZP_07568360.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|45477118|sp|Q82Z76|LYTT_ENTFA RecName: Full=Sensory transduction protein lytT
 gi|29345112|gb|AAO82868.1| response regulator [Enterococcus faecalis V583]
 gi|256991167|gb|EEU78469.1| sensory transduction protein lytT [Enterococcus faecalis Fly1]
 gi|257159142|gb|EEU89102.1| sensory transduction protein lytT [Enterococcus faecalis ARO1/DG]
 gi|257159860|gb|EEU89820.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162190|gb|EEU92150.1| two component system response regulator [Enterococcus faecalis X98]
 gi|306500668|gb|EFM69993.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|315154614|gb|EFT98630.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315167067|gb|EFU11084.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171114|gb|EFU15131.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315573215|gb|EFU85406.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315581283|gb|EFU93474.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA-LIVHIEDI 98
            F+  KI++ I KA   +       +       + +  Q   R+         +V +E+ 
Sbjct: 102 PFEEEKITQVIEKASKEMGQAVPENTAEKGPKSEAIPIQGEDRIYLVAPEDIYLVSVEER 161

Query: 99  Q----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q                + +E  L  +   K  R ++L    R+ ++  Q          
Sbjct: 162 QLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN------ 212

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
             L++++ +G+ +  +   ++   E+ 
Sbjct: 213 NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|115524815|ref|YP_781726.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisA53]
 gi|122295992|sp|Q07MT8|NRDR_RHOP5 RecName: Full=Transcriptional repressor NrdR
 gi|115518762|gb|ABJ06746.1| Ribonucleotide reductase regulator NrdR-like protein
           [Rhodopseudomonas palustris BisA53]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.084,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVDPERLEEMVSAVV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     I  E I + V   L +     +   YV +     + R A+ 
Sbjct: 93  RELESGGESEISSEAIGEIVMEHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|255970614|ref|ZP_05421200.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256760988|ref|ZP_05501568.1| sensory transduction protein lytT [Enterococcus faecalis T3]
 gi|256960533|ref|ZP_05564704.1| sensory transduction protein lytT [Enterococcus faecalis Merz96]
 gi|257080415|ref|ZP_05574776.1| sensory transduction protein lytT [Enterococcus faecalis E1Sol]
 gi|257088297|ref|ZP_05582658.1| sensory transduction protein lytT [Enterococcus faecalis D6]
 gi|293385269|ref|ZP_06631085.1| response regulator LytR [Enterococcus faecalis R712]
 gi|293389718|ref|ZP_06634162.1| response regulator LytR [Enterococcus faecalis S613]
 gi|300861427|ref|ZP_07107511.1| putative Sensory transduction protein LytR [Enterococcus faecalis
           TUSoD Ef11]
 gi|307276578|ref|ZP_07557696.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307292213|ref|ZP_07572077.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312906620|ref|ZP_07765620.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910919|ref|ZP_07769754.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312953299|ref|ZP_07772142.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|255961632|gb|EET94108.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682239|gb|EEU21934.1| sensory transduction protein lytT [Enterococcus faecalis T3]
 gi|256951029|gb|EEU67661.1| sensory transduction protein lytT [Enterococcus faecalis Merz96]
 gi|256988445|gb|EEU75747.1| sensory transduction protein lytT [Enterococcus faecalis E1Sol]
 gi|256996327|gb|EEU83629.1| sensory transduction protein lytT [Enterococcus faecalis D6]
 gi|291077469|gb|EFE14833.1| response regulator LytR [Enterococcus faecalis R712]
 gi|291080965|gb|EFE17928.1| response regulator LytR [Enterococcus faecalis S613]
 gi|300848888|gb|EFK76641.1| putative Sensory transduction protein LytR [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496719|gb|EFM66272.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306506688|gb|EFM75840.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310627268|gb|EFQ10551.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310628757|gb|EFQ12040.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311288787|gb|EFQ67343.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315026505|gb|EFT38437.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144181|gb|EFT88197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315152866|gb|EFT96882.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315159562|gb|EFU03579.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315172904|gb|EFU16921.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|323479122|gb|ADX78561.1| response regulator, lytR [Enterococcus faecalis 62]
 gi|327536315|gb|AEA95149.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 242

 Score = 44.4 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|155371785|ref|YP_001427319.1| hypothetical protein ATCV1_Z838L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155125105|gb|ABT16972.1| hypothetical protein ATCV1_Z838L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 627

 Score = 44.4 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 88/301 (29%), Gaps = 39/301 (12%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             S  + TV D   G   +L+    +         D + +R  GA +    G++ G  P 
Sbjct: 135 FQSNHIITVHDSRAGWAKSLRILIAMLYAGEVPTWDVSGIRPPGARLKTFGGRASGPKPL 194

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++             RK      LE   I                RR+  ++ ++   D
Sbjct: 195 VELFWFVVKTFKGAAGRK---LTTLECHDI---MCKIGEIVVSGGVRRSAMISLSDLDDD 248

Query: 488 LFMKRVTQNAGWTLFSPDEV-SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
               R  ++  W   +P    ++   +Y  +  +     E  +        R I      
Sbjct: 249 RM--RSAKSGPWWETAPHRALANNSAVYNTKPTVGKFMTEWLSLYNSHAGERGIVNREAM 306

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           +K+                     S  +       +N C EI L         CNL  + 
Sbjct: 307 KKIAKK--------------HGRDSSFEF-----GTNPCAEIILRP----YQFCNLTEVV 343

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA--KKSNHTHRAIGLGLMGFQ 664
           + A         + L   IR A  +       +     +   KK+    R +G+ L G  
Sbjct: 344 VRATDTK-----ETLMKKIRVATIIGTVQSTFSKFPYLRKIWKKNTEEERLLGVSLTGIF 398

Query: 665 S 665
            
Sbjct: 399 D 399


>gi|229547381|ref|ZP_04436106.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229307530|gb|EEN73517.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|315028662|gb|EFT40594.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 242

 Score = 44.4 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQIYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|113951976|gb|ABI48922.1| NrdA [Enterobacteria phage RB23]
          Length = 94

 Score = 44.4 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 12  KSYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 70

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 71  RDGSGTDDYEIETPKAE 87


>gi|256618050|ref|ZP_05474896.1| sensory transduction protein lytT [Enterococcus faecalis ATCC 4200]
 gi|256597577|gb|EEU16753.1| sensory transduction protein lytT [Enterococcus faecalis ATCC 4200]
 gi|315031888|gb|EFT43820.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
          Length = 242

 Score = 44.4 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ I  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKIPVSRSYVKEFKEKL 239


>gi|294102417|ref|YP_003554275.1| ATP-cone domain protein [Aminobacterium colombiense DSM 12261]
 gi|293617397|gb|ADE57551.1| ATP-cone domain protein [Aminobacterium colombiense DSM 12261]
          Length = 153

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
             Y   E+ + ++VIK+NG    FD  KI+R I KA            + ++ I     E
Sbjct: 39  TTYEKVEEKRTLRVIKKNGSREIFDREKITRGISKACE-------KLPVSLEQI-----E 86

Query: 78  QTVTRLLQHNKSALI--VHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
           +  +R+ +  +S     + +  I ++V   L Q    K+   YV    +YRE
Sbjct: 87  EVASRIEESFRSGGYGEIPVSLIGERVMEELKQLN--KVA--YVRFASVYRE 134



 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ------DVSSKIVLSETYKNMYDGLSESD 197
            L+++  +G+   F+ +++   + +AC  L       +  +  +        Y  +  S 
Sbjct: 49  TLRVIKKNGSREIFDREKITRGISKACEKLPVSLEQIEEVASRIEESFRSGGYGEIPVSL 108

Query: 198 LETALIFSSRTL 209
           +   ++   + L
Sbjct: 109 IGERVMEELKQL 120


>gi|119490041|ref|ZP_01622665.1| WD-repeat protein [Lyngbya sp. PCC 8106]
 gi|119454193|gb|EAW35345.1| WD-repeat protein [Lyngbya sp. PCC 8106]
          Length = 1224

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 92/250 (36%), Gaps = 33/250 (13%)

Query: 68  VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
           V   I +L    V   L+  +    +   DIQD +E  L +    ++    ++Y      
Sbjct: 336 VTTTIDDLFGGEVAEFLEQIQQGTAI-FGDIQDLLEQQLGRLSELELE---IMYW----- 386

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSET 185
           +   +            L ++     + S  S +   ++E++  G   Q V  + ++ + 
Sbjct: 387 LAINREPISLSELRKDILSVVSPTEAIESLESLKRRSLIEKSSRGFTQQPVVMEYIIEQF 446

Query: 186 YKNMYDGLSESDLET----ALIFS--------SRTLIEKEPNYAKVTARFLLEKLRREVL 233
            ++++  +   +++     ALI S        S+T +   P   ++  R+ L    +E+ 
Sbjct: 447 IEHIFREIQSENIDILNRYALIKSQAKDYIRESQTRVILNPIIQRILERYSLF---KELQ 503

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
              ++   K  + E+Q          I        LH  ++++D   LA    Y +D   
Sbjct: 504 EKFHRLLIKLRN-EVQEKSGYAGGNLINL---CHQLHLDLVNYDFSNLAIWQAYLQDANL 559

Query: 294 ---EYLGLQI 300
              ++ G  +
Sbjct: 560 QNVDFSGADL 569


>gi|325111006|ref|YP_004272074.1| transcriptional repressor nrdR [Planctomyces brasiliensis DSM 5305]
 gi|324971274|gb|ADY62052.1| Transcriptional repressor nrdR [Planctomyces brasiliensis DSM 5305]
          Length = 156

 Score = 44.4 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   ++VIK++G    F+  KI   + KA      K       +++II     +      
Sbjct: 44  EELPIKVIKKDGSRVPFNREKIREGLEKACY----KRPVSEQDIEEIISQTEAEVYENYE 99

Query: 85  QHNKSALI 92
           +   S +I
Sbjct: 100 REVPSRMI 107


>gi|300741277|ref|ZP_07071298.1| transcriptional regulator NrdR [Rothia dentocariosa M567]
 gi|300380462|gb|EFJ77024.1| transcriptional regulator NrdR [Rothia dentocariosa M567]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKR+G    FD SKI+  + KA           +   Q++ + +  + +  + 
Sbjct: 42  ETTTISVIKRSGVTEPFDRSKIAAGVRKACQGRPVGEDDLAKLAQEVEELIRARGLAEIN 101

Query: 85  QH 86
            H
Sbjct: 102 AH 103


>gi|75675918|ref|YP_318339.1| transcriptional regulator NrdR [Nitrobacter winogradskyi Nb-255]
 gi|91208016|sp|Q3SRV4|NRDR_NITWN RecName: Full=Transcriptional repressor NrdR
 gi|74420788|gb|ABA04987.1| Protein of unknown function DUF193 [Nitrobacter winogradskyi
           Nb-255]
          Length = 160

 Score = 44.4 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVEPERIETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQV-EC--SLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           +  +S     I  E I + V E   SL    + +    Y  +RE +         S  D 
Sbjct: 93  RELESGGEAEISSETIGEIVMEHLRSLDDVAYVRFASVYRNFREAKDFEAVLGELSSEDD 152

Query: 140 PIAPKLK 146
           P    L+
Sbjct: 153 PRRVPLR 159


>gi|56750844|ref|YP_171545.1| transcriptional regulator NrdR [Synechococcus elongatus PCC 6301]
 gi|81299506|ref|YP_399714.1| transcriptional regulator NrdR [Synechococcus elongatus PCC 7942]
 gi|1176894|sp|P46227|NRDR_SYNP6 RecName: Full=Transcriptional repressor NrdR
 gi|119372241|sp|Q31QE2|NRDR_SYNE7 RecName: Full=Transcriptional repressor NrdR
 gi|1075602|pir||S51484 hypothetical protein 168 - Synechococcus sp
 gi|666972|dbj|BAA05945.1| ORF 168 [Synechococcus elongatus PCC 6301]
 gi|56685803|dbj|BAD79025.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168387|gb|ABB56727.1| Protein of unknown function DUF193 [Synechococcus elongatus PCC
           7942]
          Length = 168

 Score = 44.4 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKRNG   SFD SK+ R I++A            + V D I+   +Q  +R +Q +
Sbjct: 48  PISVIKRNGDRESFDRSKLLRGIVRACEKTGVSAQQMDLLV-DEIEGTLQQRSSRDVQSS 106

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +              E  L Q G       Y+ +       R  +   ++   +    + 
Sbjct: 107 EIG------------EMVLQQIGRLSEV-AYIRFASVYRQFRGVRDFVETLDRLQDLSRD 153

Query: 148 MMDD 151
            + D
Sbjct: 154 EVGD 157


>gi|256854861|ref|ZP_05560225.1| sensory transduction protein lytT [Enterococcus faecalis T8]
 gi|256710421|gb|EEU25465.1| sensory transduction protein lytT [Enterococcus faecalis T8]
          Length = 242

 Score = 44.4 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +    V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYFVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQIYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|74419020|gb|ABA03235.1| ribonucleoside diphosphate reductase large subunit [Enterobacteria
           phage LZ7]
          Length = 83

 Score = 44.4 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 1   KPYLTQVAIMLKWVCQSASANTYNDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 59

Query: 906 RSATSVEKSTLKGVDGKLNAV 926
           R  +  +   ++    +  A 
Sbjct: 60  RDGSGTDDYEIETPKAEDCAA 80


>gi|311113353|ref|YP_003984575.1| transcriptional regulator NrdR [Rothia dentocariosa ATCC 17931]
 gi|310944847|gb|ADP41141.1| transcriptional regulator NrdR [Rothia dentocariosa ATCC 17931]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKR+G    FD SKI+  + KA           +   Q++ + +  + +  + 
Sbjct: 42  ETTTISVIKRSGVTEPFDRSKIAAGVRKACQGRPVGEDDLAKLAQEVEELIRARGLAEIN 101

Query: 85  QH 86
            H
Sbjct: 102 AH 103


>gi|113951995|gb|ABI48934.1| NrdA [Enterobacteria phage U5]
          Length = 86

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 4   KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 62

Query: 906 RSATSVEKSTLKGVDG 921
           R  +  +   ++    
Sbjct: 63  RDGSGTDDYEIETPKA 78


>gi|170741292|ref|YP_001769947.1| transcriptional regulator NrdR [Methylobacterium sp. 4-46]
 gi|226733008|sp|B0UML4|NRDR_METS4 RecName: Full=Transcriptional repressor NrdR
 gi|168195566|gb|ACA17513.1| ATP-cone domain protein [Methylobacterium sp. 4-46]
          Length = 186

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 25/111 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                + +  +  E+ V
Sbjct: 45  QLRDLTVVKRSGRRVPFDRDKLQRSIDVALRK----------------RPVEADRVERLV 88

Query: 81  TRLLQHNKSALIVHI--EDIQDQV-E--CSLMQSGHHKITREYVLYREERS 126
           + + +  +S     +  E I + V E   +L    + +    Y  +RE R 
Sbjct: 89  SGIARQLESGGEAEVSSEAIGELVMEGLKALDDVAYVRFASVYKNFREARD 139


>gi|187779379|ref|ZP_02995852.1| hypothetical protein CLOSPO_02975 [Clostridium sporogenes ATCC
           15579]
 gi|187773004|gb|EDU36806.1| hypothetical protein CLOSPO_02975 [Clostridium sporogenes ATCC
           15579]
          Length = 92

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL--TEQTVTRLLQH 86
           +++IK++G +  FD  K+  +I  +    EG   + S  +  I+K++    + + +  + 
Sbjct: 1   MEIIKKSGKLEYFDERKLKTSIANSARDTEGVHLTES-DLNAIVKDIKNIIKNIRKDNEK 59

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             S  ++ I  I D     L+++  HK+ +E+V ++++R
Sbjct: 60  TSSYELIGI--IND----VLIKNKFHKVLKEFVAFKDKR 92


>gi|209884994|ref|YP_002288851.1| transcriptional regulator NrdR [Oligotropha carboxidovorans OM5]
 gi|226733010|sp|B6JGI0|NRDR_OLICO RecName: Full=Transcriptional repressor NrdR
 gi|209873190|gb|ACI92986.1| transcriptional regulator NrdR [Oligotropha carboxidovorans OM5]
          Length = 158

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVETERLEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S+    I  E I + V  +L Q     +   YV +     + R A+ 
Sbjct: 93  RELESSGEAEISSEMIGEIVMENLRQLD--DVA--YVRFASVYRNFREAKD 139


>gi|154249835|ref|YP_001410660.1| transcriptional regulator NrdR [Fervidobacterium nodosum Rt17-B1]
 gi|189030547|sp|A7HM70|NRDR_FERNB RecName: Full=Transcriptional repressor NrdR
 gi|154153771|gb|ABS61003.1| ATP-cone domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 153

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL----TEQTV 80
           +   + VIK++G    FD  KI   ++KAF             V +I+  L    T +  
Sbjct: 45  ETGPITVIKKDGRREKFDRKKILNGLLKAFEKRPITVDDMERIVDNIVSQLQKSGTLEVP 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           + L+       +  ++ +
Sbjct: 105 SELIGKLVMEELRKVDQV 122


>gi|312901989|ref|ZP_07761251.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|311290925|gb|EFQ69481.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
          Length = 242

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I KA      AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKASKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPTTLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|170781780|ref|YP_001710112.1| transcriptional regulator NrdR [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|189030528|sp|B0RIK5|NRDR_CLAMS RecName: Full=Transcriptional repressor NrdR
 gi|169156348|emb|CAQ01496.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 157

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM---AVEGKGASRSIRVQDIIK 73
            +   + VIKRNG V  F   KI   + KA       +   A  + RV++ I+
Sbjct: 40 TTETASLSVIKRNGVVEPFSREKIVTGVRKACQGRPVTDTDLAVLAQRVEEAIR 93


>gi|148273028|ref|YP_001222589.1| transcriptional regulator NrdR [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|189030527|sp|A5CS39|NRDR_CLAM3 RecName: Full=Transcriptional repressor NrdR
 gi|147830958|emb|CAN01903.1| putative transcriptional regulator [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
          Length = 157

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM---AVEGKGASRSIRVQDIIK 73
            +   + VIKRNG V  F   KI   + KA       +   A  + RV++ I+
Sbjct: 40 TTETASLSVIKRNGVVEPFSREKIVTGVRKACQGRPVTDTDLAVLAQRVEEAIR 93


>gi|39935792|ref|NP_948068.1| transcriptional regulator NrdR [Rhodopseudomonas palustris CGA009]
 gi|192291381|ref|YP_001991986.1| NrdR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|59799117|sp|Q6N692|NRDR_RHOPA RecName: Full=Transcriptional repressor NrdR
 gi|226736127|sp|B3QJK5|NRDR_RHOPT RecName: Full=Transcriptional repressor NrdR
 gi|39649645|emb|CAE28167.1| DUF193:ATP cone domain [Rhodopseudomonas palustris CGA009]
 gi|192285130|gb|ACF01511.1| ATP-cone domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 160

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     EQ V+ ++
Sbjct: 45  QLRELIVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRPVDPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     I  E I + V   L +     +   YV +     + R A+ 
Sbjct: 93  RELESGGEAEISSETIGESVMDHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|309811240|ref|ZP_07705031.1| putative vitamin B12-dependent ribonucleotide reductase
           [Dermacoccus sp. Ellin185]
 gi|308434780|gb|EFP58621.1| putative vitamin B12-dependent ribonucleotide reductase
           [Dermacoccus sp. Ellin185]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 19/95 (20%)

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHD-------------------MNTANWIPDLF 489
              L+  H D+EEF++ +    D  R   D                    N +  + D F
Sbjct: 1   MVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRVNDEF 60

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           M+ V     + L + D    +  +  +E      N
Sbjct: 61  MQAVVDGGSFGLRARDTGEVIETVDARELSTRSTN 95


>gi|307945265|ref|ZP_07660601.1| transcriptional regulator NrdR [Roseibium sp. TrichSKD4]
 gi|307771138|gb|EFO30363.1| transcriptional regulator NrdR [Roseibium sp. TrichSKD4]
          Length = 158

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+KR+G    FD  K++R       +VE     R +   + I+ +    V +L 
Sbjct: 45  QLRELFVVKRSGRRVPFDREKLAR-------SVETAVRKRPVE-PERIERMISGIVRQLE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              +S   V  E I + V   L   G   +   YV +     + R A+ 
Sbjct: 97  SSGESD--VTAETIGNHVMEGL--KGIDDVA--YVRFASVYKNFREAKD 139


>gi|113951978|gb|ABI48923.1| NrdA [Enterobacteria phage RB27]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N Y D         P    +D +    W  G K  YY  +
Sbjct: 13  KPYLTQVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 71

Query: 906 RSATSVEKSTLKGVDGK 922
           R  +  +   ++    +
Sbjct: 72  RDGSGTDDYEIETPKAE 88


>gi|85715451|ref|ZP_01046432.1| hypothetical protein NB311A_17139 [Nitrobacter sp. Nb-311A]
 gi|85697646|gb|EAQ35522.1| hypothetical protein NB311A_17139 [Nitrobacter sp. Nb-311A]
          Length = 160

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVEPEQIETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +  +S     I  E I + V   L       +   YV +     + R A+        ++
Sbjct: 93  RELESGGEAEISSETIGEIVMDHL--RSLDDVA--YVRFASVYRNFREAKDFEAVLGELS 148

Query: 143 PKLKIMMDDGTLISF 157
            +     DD   +  
Sbjct: 149 SE-----DDARRVPL 158


>gi|184201115|ref|YP_001855322.1| hypothetical protein KRH_14690 [Kocuria rhizophila DC2201]
 gi|183581345|dbj|BAG29816.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 298

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKR+G    FD  KI   + KA               +D +  L ++    + 
Sbjct: 42  ETTSISVIKRSGVTEPFDRQKIVNGVRKACQ--------GRPVSEDDLAMLAQEVEESIR 93

Query: 85  QHNKSALIVH 94
               + +  H
Sbjct: 94  ASGSAEVEAH 103


>gi|170750354|ref|YP_001756614.1| ATP-cone domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|226733007|sp|B1LZ89|NRDR_METRJ RecName: Full=Transcriptional repressor NrdR
 gi|170656876|gb|ACB25931.1| ATP-cone domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ V V+KR+G    FD  K    I  A+ K   AV+ +      R++ ++  +T Q  
Sbjct: 45  QLREVVVLKRSGKRVPFDRDKLQRSIDVALRK--RAVDPE------RIERLVSGITRQLE 96

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +           V  E I + V   L   G   +   YV +     + R A+        
Sbjct: 97  SA------GEPEVTSEAIGELVMAGL--KGLDDVA--YVRFASVYKNFREAR-------- 138

Query: 141 IAPKLKIMMDDGTLIS 156
              +L   + DG  + 
Sbjct: 139 DFEELLGTLSDGMPVP 154


>gi|188589654|ref|YP_001922325.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|251781036|ref|ZP_04823956.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|188499935|gb|ACD53071.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243085351|gb|EES51241.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 89

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK+NG +  F  SK+ ++I+ A   V    +   +        L E+ V  +L    
Sbjct: 1   MNIIKKNGRIEEFKISKVRQSILSASEEVTEPLSDAEL-------KLIEKEVNNILSKLN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREY 118
                   ++      +L + G   + + Y
Sbjct: 54  RTETSS-YEVFGICLNALNELGFKAVCKSY 82


>gi|315185588|gb|EFU19357.1| ATP-cone domain protein [Spirochaeta thermophila DSM 6578]
          Length = 164

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K + VIK++G    F+  KI + I++A   VE    S    +++++  + E+    L 
Sbjct: 52  EEKPLMVIKKSGRREPFERGKIEKGILRA---VEKLPVS-GKTIEELVNRIEER--AALY 105

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 +   +  + D V   L           Y+ +     + R  ++  +    I   
Sbjct: 106 DPIAREVPTSV--LGDMVLEELKALDFV----AYIRFASVYKNFRDLKAFLEEIGHIQKT 159

Query: 145 LKIMM 149
             +  
Sbjct: 160 NNVTR 164


>gi|255326241|ref|ZP_05367327.1| transcriptional regulator NrdR [Rothia mucilaginosa ATCC 25296]
 gi|283458358|ref|YP_003362981.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
 gi|255296695|gb|EET76026.1| transcriptional regulator NrdR [Rothia mucilaginosa ATCC 25296]
 gi|283134396|dbj|BAI65161.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
          Length = 151

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKR+G    FD SKI+  + KA           +   Q++ + +  + +  + 
Sbjct: 42  ETTTISVIKRSGVTEPFDRSKIAAGVRKACQGRPVGEDDLAKLAQEVEELIRARGLAEIN 101

Query: 85  QH 86
            H
Sbjct: 102 AH 103


>gi|167744303|ref|ZP_02417077.1| hypothetical protein Bpse14_39913 [Burkholderia pseudomallei 14]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV--PDDLYGIF----GALQENAM 392
           A  FY  L +  F                ++SCF+  +  P  L         AL E  +
Sbjct: 70  ARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARL 129

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                  +G D++ +   GA     +  S GV   L   +
Sbjct: 130 ALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFD 169


>gi|304313898|ref|YP_003849045.1| anaerobic ribonucleotide-triphosphate reductase
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587357|gb|ADL57732.1| anaerobic ribonucleotide-triphosphate reductase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 771

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++ ++G    F+ ++L   +    + L   +S+ V SE  +++Y+G++  ++   L++ +
Sbjct: 19  VLKNNGIREKFSHEKLVKSLLNLGASL--WTSENVASEVARSVYNGITTKEI-KILVYDA 75

Query: 207 RTLIEKEPNYAKVTA-RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              +++E     + A R  +   R  + T   KK +     E      E   R I   V 
Sbjct: 76  LKKVDEELADRYLAANRMRVRTSRDRIETFDQKKIEDNLVREAGA--SEEVAREIASDVW 133

Query: 266 ARLLHESMMDFDLVYL-ANDLKYERDFAFEYLGLQILYDRYF 306
             L        ++ YL A  ++   +      GL+ L  RY 
Sbjct: 134 REL-----KKLNVEYLTAPMIREVVNTKLIEHGLETLRRRYT 170


>gi|298291638|ref|YP_003693577.1| ATP-cone domain protein [Starkeya novella DSM 506]
 gi|296928149|gb|ADH88958.1| ATP-cone domain protein [Starkeya novella DSM 506]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L    V
Sbjct: 45  QLRELTVLKRSGRRVPFDRDKLARSIEVALRK------------RPVDPERVERLVSGLV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL    +S   +  E I ++V  SL Q     +   YV +     + R A+   +    
Sbjct: 93  RRLESMGESE--ISSEMIGERVMESLKQLD--DVA--YVRFASVYRNFREAKDFEQLLGE 146

Query: 141 IAPKLKIMMDD 151
           +  +   + DD
Sbjct: 147 LDARPAGVDDD 157


>gi|227894222|ref|ZP_04012027.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           ultunensis DSM 16047]
 gi|227863942|gb|EEJ71363.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           ultunensis DSM 16047]
          Length = 738

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E +    ++KR+G    F+       I K       K    ++ + D    + E+   +L
Sbjct: 15  ELVLPTTIVKRDGARYPFE-------IFK------LKMVLHNLDLDDAATAVLEKIAAKL 61

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
                +  +V  +D+      SL + G+    + Y+ YR+ 
Sbjct: 62  A----TQDVVKAQDVATAFRDSLNELGYLDEAKAYIAYRKH 98


>gi|119471898|ref|ZP_01614206.1| L-aspartate oxidase [Alteromonadales bacterium TW-7]
 gi|119445271|gb|EAW26561.1| L-aspartate oxidase [Alteromonadales bacterium TW-7]
          Length = 536

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVAND---------TAVAVNQGGKRKGAVCAYLETWHI 457
           +RG GA++   +G       F+K  ++          A A++   KR GA C YL+  H 
Sbjct: 262 MRGEGAYLKRPDGTR-----FMKDFDEREELAPRDIVARAIDFEMKRLGANCVYLDISHK 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM-----KRVTQNAGWTLFSPDEVSDLHD 512
           D E F+     T         ++    I    +        T     T F+     D   
Sbjct: 317 DKE-FIIEHFPT----IYAKCLSVGLDITKEAIPVVPAAHYTCGGVMTDFNGKTDLDNLY 371

Query: 513 LYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKM 549
             G+          R A     E  VF   +A  +  K+
Sbjct: 372 AVGEVAYTGLHGANRMASNSLLECIVFAHAAAKDILSKI 410


>gi|163852585|ref|YP_001640628.1| ATP-cone domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|226733004|sp|A9VYW5|NRDR_METEP RecName: Full=Transcriptional repressor NrdR
 gi|163664190|gb|ABY31557.1| ATP-cone domain protein [Methylobacterium extorquens PA1]
          Length = 185

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 25/145 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RTVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL    +    V  E I + V   L   G   +   YV +     + R AQ        
Sbjct: 93  RRLESGGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQDFQDLLGT 146

Query: 141 IAPKLKIMMD---DGTLISFNSKRL 162
           +  +L+   D   DG         +
Sbjct: 147 LGERLEGEGDLPEDGEAAPAPPDEV 171


>gi|90424159|ref|YP_532529.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisB18]
 gi|119372219|sp|Q214H6|NRDR_RHOPB RecName: Full=Transcriptional repressor NrdR
 gi|90106173|gb|ABD88210.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           BisB18]
          Length = 161

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R       +V+     R +   + ++ +    V  L 
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR-------SVQISLRKRPVE-PEKVEKMVSAIVRELE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              ++   +  E I + V   L +     +   YV +     + R A+ 
Sbjct: 97  SAGEAE--ISSEAIGEIVMEHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|254500636|ref|ZP_05112787.1| ATP cone domain, putative [Labrenzia alexandrii DFL-11]
 gi|222436707|gb|EEE43386.1| ATP cone domain, putative [Labrenzia alexandrii DFL-11]
          Length = 115

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 15/128 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+KR+G    FD  K+ R++    +AV  +         + I+ +    V +L 
Sbjct: 2   QLRELMVLKRSGRRVPFDREKLVRSVQ---IAVRKRPVDP-----ERIERMVSGIVRQLE 53

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDAPIAP 143
              +S   +  E I + V   L   G   +   YV +     + R A+   +  D    P
Sbjct: 54  SSGESE--ITAETIGNHVMEGL--KGVDDVA--YVRFASVYKNFREAKDFEALLDELSDP 107

Query: 144 KLKIMMDD 151
              +   D
Sbjct: 108 VTPVSNKD 115


>gi|312113517|ref|YP_004011113.1| ATP-cone domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218646|gb|ADP70014.1| ATP-cone domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 159

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            PS+D        + P     F      +++ + +IKR+G    FD  K+ R+I    +A
Sbjct: 17  RPSEDHTAIRRRRSCPECGARFTTFERVQLRELTIIKRSGRRVPFDREKLRRSIE---IA 73

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
              +        +D I+    + V +L   N+S +   I
Sbjct: 74  TRKRPIG-----EDRIEQFVSEIVRKLEISNESEIPSEI 107


>gi|118587984|ref|ZP_01545394.1| hypothetical protein SIAM614_10423 [Stappia aggregata IAM 12614]
 gi|118439606|gb|EAV46237.1| hypothetical protein SIAM614_10423 [Stappia aggregata IAM 12614]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+KR+G    FD  K+ R++    +AV  +         D I+ +    V +L 
Sbjct: 45  QLRELLVLKRSGRRVPFDREKLMRSVQ---IAVRKRPVDP-----DKIERMVSGIVRQLE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
              ++   +  E I + V   L   G   +   YV +     + R A+ 
Sbjct: 97  SSGETE--ITAETIGNHVMEGL--KGIDDVA--YVRFASVYKNFREAKD 139


>gi|300865635|ref|ZP_07110408.1| Transcriptional repressor nrdR [Oscillatoria sp. PCC 6506]
 gi|300336362|emb|CBN55558.1| Transcriptional repressor nrdR [Oscillatoria sp. PCC 6506]
          Length = 187

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   SFD SK+ R I++A           +  V+ I   +  +   R L+  
Sbjct: 48  PITVIKRDGKRESFDKSKLLRGIIRACEKTG----ITAAEVEKIADEIESELQGRSLREV 103

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYREERSDVRAAQSHSKSDAPIAP 143
            S+         D  E  L Q         YV    +YR+ +  +R              
Sbjct: 104 ASS---------DIGELVLKQLRRLSEV-AYVRFASVYRQFQG-IRDFVEALDRLQSDHD 152

Query: 144 KLKIMMDD 151
               +  D
Sbjct: 153 TNLEIETD 160


>gi|255008723|ref|ZP_05280849.1| hypothetical protein Bfra3_06252 [Bacteroides fragilis 3_1_12]
 gi|313146459|ref|ZP_07808652.1| toprim domain-containing protein [Bacteroides fragilis 3_1_12]
 gi|313135226|gb|EFR52586.1| toprim domain-containing protein [Bacteroides fragilis 3_1_12]
          Length = 681

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 24/123 (19%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGG-----VTSFDPSKISRAIMKAFMAVEGKGASRS 65
           ++D+ P+++      +K ++V  R+G      +  F   K      KA   V      + 
Sbjct: 563 EKDSDPAVSV-----VKALKV--RDGSPLDVPIMQFSWDK-----EKAM-HVYLGEKPKE 609

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            + +     L         +      +  +E+IQ  +E         +  + Y+ +  E+
Sbjct: 610 EKDKRKEDELVAVAKEVFSRRRFVTYVELVEEIQSILEVK------ERTAKSYIKFMREK 663

Query: 126 SDV 128
             +
Sbjct: 664 EII 666


>gi|332297834|ref|YP_004439756.1| Transcriptional repressor nrdR [Treponema brennaborense DSM 12168]
 gi|332180937|gb|AEE16625.1| Transcriptional repressor nrdR [Treponema brennaborense DSM 12168]
          Length = 154

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K   V+KR+G    FD SK+ + I +A          +      +I+N+  +     L
Sbjct: 45  EEKPFMVVKRDGRRQPFDRSKLEKGIDRA--------LEKRPVSSTMIENIVSEIEDAAL 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITR-EYV----LYRE 123
              +++  +   ++ D V   L     H I +  Y+    +YR 
Sbjct: 97  IKGRTSREISTAELGDLVLEKL-----HAIDKVAYIRFASVYRH 135


>gi|304314636|ref|YP_003849783.1| hypothetical protein MTBMA_c08750 [Methanothermobacter
          marburgensis str. Marburg]
 gi|302588095|gb|ADL58470.1| conserved hypothetical protein [Methanothermobacter marburgensis
          str. Marburg]
          Length = 90

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          + VIKR G   ++DPSKI  ++ KA +        +   ++ + + +TE+ 
Sbjct: 1  MNVIKRRGSREAYDPSKIRASLEKAAIDAGYSPEEKREIIEKVYQTVTEKI 51


>gi|329113507|ref|ZP_08242288.1| Transcriptional repressor NrdR [Acetobacter pomorum DM001]
 gi|326697332|gb|EGE48992.1| Transcriptional repressor NrdR [Acetobacter pomorum DM001]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+K +G    FD  KI+R+I              ++R + + +   EQ VT ++
Sbjct: 45  QLRELVVVKNDGRRAPFDREKIARSIR------------IALRKRPVSEEQIEQIVTGIV 92

Query: 85  QHNKSALIVHI 95
           +  +      +
Sbjct: 93  RQLEGNGETEV 103


>gi|258542346|ref|YP_003187779.1| hypothetical protein APA01_12530 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633424|dbj|BAH99399.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636483|dbj|BAI02452.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639536|dbj|BAI05498.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642592|dbj|BAI08547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645647|dbj|BAI11595.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648700|dbj|BAI14641.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651753|dbj|BAI17687.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654744|dbj|BAI20671.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 158

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+K +G    FD  KI+R+I              ++R + + +   EQ VT ++
Sbjct: 45  QLRELVVVKNDGRRAPFDREKIARSIR------------IALRKRPVSEEQIEQIVTGIV 92

Query: 85  QHNKSALIVHI 95
           +  +      +
Sbjct: 93  RQLEGNGETEV 103


>gi|37596205|gb|AAQ94850.1| NrdE [Yersinia pestis]
 gi|37596208|gb|AAQ94852.1| NrdE [Yersinia pestis]
 gi|37596211|gb|AAQ94854.1| NrdE [Yersinia pestis]
 gi|37596213|gb|AAQ94855.1| NrdE [Yersinia pestis]
 gi|37596216|gb|AAQ94857.1| NrdE [Yersinia pestis]
 gi|37596219|gb|AAQ94859.1| NrdE [Yersinia pestis]
 gi|37596222|gb|AAQ94861.1| NrdE [Yersinia pestis]
 gi|37596225|gb|AAQ94863.1| NrdE [Yersinia pestis]
 gi|37596228|gb|AAQ94865.1| NrdE [Yersinia pestis]
          Length = 36

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
             AW  G+KT YY+R R    +E + ++G 
Sbjct: 3   IYAWKKGIKTIYYIRLRQMA-LEGTEVEGC 31


>gi|254444191|ref|ZP_05057667.1| transcriptional regulator NrdR [Verrucomicrobiae bacterium
          DG1235]
 gi|198258499|gb|EDY82807.1| transcriptional regulator NrdR [Verrucomicrobiae bacterium
          DG1235]
          Length = 153

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           + V KR+G    FD +KI  ++ +A           +I V+D+I  L  +
Sbjct: 48 NLYVTKRDGRREDFDKAKIIYSLRRACQKRPVDAEQINILVEDMIDALESE 98



 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R  R  +  +   S ++  +   L +   DG    F+  ++   +  AC   + V ++ +
Sbjct: 26  RRRRECLDCSHRFSTTEQVLRENLYVTKRDGRREDFDKAKIIYSLRRACQK-RPVDAEQI 84


>gi|186688096|gb|ACC86125.1| putative ribonucleotide reductase regulator NrdR-like protein
           [uncultured bacterium]
          Length = 151

 Score = 43.2 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + VIKR+G    FD  KI   I+K   + E +  S S  ++ I+ ++       + Q 
Sbjct: 48  PIYVIKRDGSREPFDKRKILNGILK---SCEKRPVSISS-IESIVDDIERVIFNSMEQE 102


>gi|262195342|ref|YP_003266551.1| ATP-cone domain protein [Haliangium ochraceum DSM 14365]
 gi|262078689|gb|ACY14658.1| ATP-cone domain protein [Haliangium ochraceum DSM 14365]
          Length = 164

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+  V  FD  K+ RA+ +      G+ A  +  ++ I +++  + V    + 
Sbjct: 44  PSLKVIKRSERVEGFDSDKLQRALER---VCRGRSAISASDIRRIARDIEAELVDASAKS 100

Query: 87  NKSALIVH 94
             S  IV 
Sbjct: 101 VHSGQIVD 108



 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R  R      +  +  +   AP LK++     +  F+S +L+  +E  C G   +S+  +
Sbjct: 23  RRRRQCNACRRRFTTYERAGAPSLKVIKRSERVEGFDSDKLQRALERVCRGRSAISASDI 82


>gi|296129416|ref|YP_003636666.1| ATP-cone domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021231|gb|ADG74467.1| ATP-cone domain protein [Cellulomonas flavigena DSM 20109]
          Length = 163

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
          +   + V+KR+G    F   KI+  + KA           ++  Q + +NL
Sbjct: 42 ETASLSVVKRSGATEPFSREKIANGVRKACQGRPVSEDDLALLAQKVEENL 92


>gi|27380143|ref|NP_771672.1| transcriptional regulator NrdR [Bradyrhizobium japonicum USDA 110]
 gi|38258764|sp|Q89K77|NRDR_BRAJA RecName: Full=Transcriptional repressor NrdR
 gi|27353297|dbj|BAC50297.1| bll5032 [Bradyrhizobium japonicum USDA 110]
          Length = 160

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRQVEPERVEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQV-EC--SLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           +  ++     I  E I + V E   +L    + +    Y  +RE +         S  + 
Sbjct: 93  RELETGGEAEISSEVIGETVMEHLRTLDDVAYVRFASVYRNFREAKDFADVLGELSGEEE 152

Query: 140 PIAPKLK 146
                ++
Sbjct: 153 ARLAAIR 159


>gi|148379965|ref|YP_001254506.1| hypothetical protein CBO2003 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931601|ref|YP_001384264.1| hypothetical protein CLB_1944 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934534|ref|YP_001387803.1| hypothetical protein CLC_1950 [Clostridium botulinum A str. Hall]
 gi|153940075|ref|YP_001391328.1| hypothetical protein CLI_2070 [Clostridium botulinum F str.
           Langeland]
 gi|168179711|ref|ZP_02614375.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168185008|ref|ZP_02619672.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|170756092|ref|YP_001781567.1| hypothetical protein CLD_2621 [Clostridium botulinum B1 str. Okra]
 gi|226949301|ref|YP_002804392.1| hypothetical protein CLM_2220 [Clostridium botulinum A2 str. Kyoto]
 gi|237795434|ref|YP_002862986.1| hypothetical protein CLJ_B2207 [Clostridium botulinum Ba4 str. 657]
 gi|148289449|emb|CAL83546.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927645|gb|ABS33145.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930448|gb|ABS35947.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|152935971|gb|ABS41469.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169121304|gb|ACA45140.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|182669468|gb|EDT81444.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182671920|gb|EDT83881.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226843498|gb|ACO86164.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229260996|gb|ACQ52029.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
 gi|295319357|gb|ADF99734.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
 gi|322806270|emb|CBZ03838.1| no significant homology [Clostridium botulinum H04402 065]
          Length = 92

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IK++G + +FD SK+  +I  +    +G   + S  +  I+K++          + K
Sbjct: 1   MEIIKKSGKLEAFDESKLKTSIANSARDTKGVHLTES-DLNSIVKDIKNIVKNIRKDNEK 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           ++    I  I D     L ++  H++ +EY+ + +++
Sbjct: 60  TSSYELIGIIND----VLKKNKFHEVLKEYIAFNDKK 92


>gi|332706534|ref|ZP_08426595.1| putative transcriptional regulator [Lyngbya majuscula 3L]
 gi|332354418|gb|EGJ33897.1| putative transcriptional regulator [Lyngbya majuscula 3L]
          Length = 126

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 32 IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          IKR+G   SFD SK+ R I++A              V +I   L ++    ++ H
Sbjct: 2  IKRDGKRESFDRSKLLRGIVRACEKTGILHKRLEALVDEIEAELQQRFGREVISH 56


>gi|332532642|ref|ZP_08408518.1| L-aspartate oxidase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037858|gb|EGI74307.1| L-aspartate oxidase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 536

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVAND---------TAVAVNQGGKRKGAVCAYLETWHI 457
           +RG GA++   +G       F+K  +           A A++   KR GA C YL+  H 
Sbjct: 262 MRGEGAYLKRPDGTR-----FMKDFDSREELAPRDIVARAIDFEMKRLGANCVYLDISHK 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM-----KRVTQNAGWTLFSPDEVSDLHD 512
           D ++F+     T         ++    I    +        T     T F+     D   
Sbjct: 317 D-KDFIIEHFPT----IYAKCLSVGLDITKEAIPVVPAAHYTCGGVMTDFNGKTDLDNLY 371

Query: 513 LYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKM 549
             G+          R A     E  VF   +A  +  K+
Sbjct: 372 AVGEVAYTGLHGANRMASNSLLECIVFAHAAAKDILSKI 410


>gi|284048632|ref|YP_003398971.1| ATP-cone domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952853|gb|ADB47656.1| ATP-cone domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 152

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI   +++AF         +     + I++LT Q    +    ++ 
Sbjct: 51  VIKRDGRREMFDSKKILAGLLRAF--------EKRPFTYEQIQSLTAQIENEIRASGENE 102


>gi|108805661|ref|YP_645598.1| transcriptional regulator NrdR [Rubrobacter xylanophilus DSM 9941]
 gi|119372223|sp|Q1AS42|NRDR_RUBXD RecName: Full=Transcriptional repressor NrdR
 gi|108766904|gb|ABG05786.1| Ribonucleotide reductase regulator NrdR-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 156

 Score = 42.8 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  K+   + KA         ++     + I  + +Q    L +  +  
Sbjct: 51  VLKRDGRREPFDREKLRAGLEKAC--------AKQRVTGEQIDLIVDQIEAELRERRRHE 102

Query: 91  LIVHIEDIQDQV 102
             V    I D V
Sbjct: 103 --VTSRRIGDMV 112



 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ------D 175
           R  R  +   +  +  +     +L ++  DG    F+ ++L   +E+AC+  +      D
Sbjct: 26  RRRRECLACGKRFTTYERREPLRLMVLKRDGRREPFDREKLRAGLEKACAKQRVTGEQID 85

Query: 176 VSSKIVLSETYKNMYDGLSESDL 198
           +    + +E  +     ++   +
Sbjct: 86  LIVDQIEAELRERRRHEVTSRRI 108


>gi|126460644|ref|YP_001056922.1| hypothetical protein Pcal_2041 [Pyrobaculum calidifontis JCM
          11548]
 gi|126250365|gb|ABO09456.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM
          11548]
          Length = 91

 Score = 42.8 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
          V+VIKR+G    F   KI  +I+KA   V+
Sbjct: 2  VKVIKRDGREEEFVVEKIVVSILKAGAPVD 31


>gi|213616026|ref|ZP_03371852.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 46

 Score = 42.8 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 624 TIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           T+ TA+R L  V D++   ++      N    AIGLG M     L 
Sbjct: 1   TVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLA 46


>gi|213028366|ref|ZP_03342813.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 39

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++     AW  G+K+ YY+R R    +E + ++G 
Sbjct: 1   INKAQIYAWRKGIKSLYYIRLRQLA-LESTEIEGC 34


>gi|260584620|ref|ZP_05852366.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           elegans ATCC 700633]
 gi|260157643|gb|EEW92713.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           elegans ATCC 700633]
          Length = 720

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  V V KR+  V  F   KI   + +A  +   +    S   ++I+  +T++ +  +  
Sbjct: 1   MSEVLVKKRDERVEVFHRQKIFHGLERAEKS---RYGELSKNRKEILDEVTKKILLEIES 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREY----VLYREERSDVRAAQSHSKSDAPI 141
              +  I+  E+I+  V   L Q G   +  ++    + + ++R             +  
Sbjct: 58  L--AIKIIKTEEIESIVLNCLKQEGETVLANQFLAARIEWDKKREKEMDVTQRLTKLSQR 115

Query: 142 APKLKIMMDDGTLISFNSKR 161
              +     +     FN++R
Sbjct: 116 DASIIHENANKDSEVFNTQR 135


>gi|317487290|ref|ZP_07946085.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
 gi|316921480|gb|EFV42771.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
          Length = 653

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 32/252 (12%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           R I       K+     + G     F +  C   S       + SS        +  +  
Sbjct: 317 RTIKDQWFLEKIAKANLKYG-----FINIYCGESSTLSSCCRLRSSVSDLGYANSFGAGS 371

Query: 597 TAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDIN--CHTIEKAKKSN--- 650
           T + +LG + L L   A    D+++    I   VR +   I+        ++  +     
Sbjct: 372 TKIGSLGVVTLNLPKLAGASVDFEEFLRFIAPVVR-MAATINAAKRDFIKDRIARGALPL 430

Query: 651 ------HTHRAIG-LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
                    R     G  G   AL +L     + E +E A+  +  I+      + ++A+
Sbjct: 431 YTLGFMDLSRQYSTCGFTGLYEALAMLGHDMRTDEGLEAAERVLAAINAE----NAKMAK 486

Query: 704 ERGAYSSFK----GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP-WDE---LKKRVKT 755
           + G   + +     S   +       +G      D  A+     LP W E   +  R++ 
Sbjct: 487 KYGTPHNMEQVPGESSAVKLARKDALLGYELHEGDAPALYSNQFLPLWTEGVDVLDRIRV 546

Query: 756 IGMRNSNCMAIA 767
            G  +S C   A
Sbjct: 547 QGRLDSLCTGGA 558


>gi|222475862|ref|YP_002564383.1| ATP-cone domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|254768014|sp|B9LWA7|NRDR_HALLT RecName: Full=Transcriptional repressor NrdR
 gi|222454233|gb|ACM58497.1| ATP-cone domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 162

 Score = 42.4 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 28  GVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
            +QV KRNG +  F+ +K    I RA+ K          +    + D I++  +   TRL
Sbjct: 48  SLQVKKRNGTIEPFNRTKLRAGIERAVEK-----RDVSETTVTTLVDDIESALQDRETRL 102

Query: 84  LQHNKSALIVH 94
           +  +    +V 
Sbjct: 103 VSSSLIGELVS 113


>gi|316934112|ref|YP_004109094.1| ATP-cone domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601826|gb|ADU44361.1| ATP-cone domain protein [Rhodopseudomonas palustris DX-1]
          Length = 160

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     EQ V+ ++
Sbjct: 45  QLRELIVIKRNGRRVPFDRDKLVR------------SVQISLRKRPVDPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     I  E I + V   L +     +   YV +     + R A+ 
Sbjct: 93  RELESGGEAEISSEIIGESVMEHLRKLD--DVA--YVRFASVYRNFREAKD 139


>gi|327197762|ref|YP_004301460.1| gp127 [Brochothrix phage A9]
 gi|299810362|gb|ADJ53161.1| gp127 [Brochothrix phage A9]
          Length = 46

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
              + +R  GA I G    S GV+P +K+  D+    NQ
Sbjct: 6   VSLSNIRESGAPIKGYANASSGVVPVMKILEDSFSYSNQ 44


>gi|261402257|ref|YP_003246481.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           vulcanius M7]
 gi|261369250|gb|ACX71999.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           vulcanius M7]
          Length = 764

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 40/147 (27%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           F E+   +Q+IKR+G    F+ +K    ++K+ +                ++N+  +  T
Sbjct: 7   FSEEKLKLQIIKRDGREEKFNINK----LVKSLINSGVNYGD--------LENILSEIYT 54

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           ++     +      E++++ V         + I +        R+D          +   
Sbjct: 55  KVYNGMST------EELKNIV---------YDILK--------RTDP-----KIAENYKN 86

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEE 168
              LK+   +     F+ +++   + +
Sbjct: 87  KVILKVRTSEKEFEPFDKEKIVKALVK 113



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA-- 201
           KL+I+  DG    FN  +L   +    SG+     + +LSE Y  +Y+G+S  +L+    
Sbjct: 13  KLQIIKRDGREEKFNINKLVKSLIN--SGVNYGDLENILSEIYTKVYNGMSTEELKNIVY 70

Query: 202 ---------LIFSSRTLI-----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
                    +  + +  +       E  +       +++ L +E      KK  +    E
Sbjct: 71  DILKRTDPKIAENYKNKVILKVRTSEKEFEPFDKEKIVKALVKEAGAD--KKIAQKIADE 128

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           ++    +   +Y+   +   +++  ++++    L
Sbjct: 129 VELELKKLNVKYLTAPMIREIVNAKLLEYGFEEL 162


>gi|74419024|gb|ABA03238.1| ribonucleoside diphosphate reductase large subunit [Enterobacteria
           phage RB2]
          Length = 85

 Score = 42.4 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE--------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +   +   KW+ Q+ S N + D         P    +D +    W  G K  YY  +
Sbjct: 3   KPYLTQVAIMLKWVCQSASSNRHNDPQIFPKGKVPMSIMIDDL-LYFWYFGGKNFYYHNT 61

Query: 906 RSATSVEKSTLKGVDG 921
           R  +  +   ++    
Sbjct: 62  RDGSGTDDYEIETPKA 77


>gi|90419409|ref|ZP_01227319.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336346|gb|EAS50087.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 168

 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 22/113 (19%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ +QV+K++G    FD  K    +  A+ K   +V+           D ++ L    V
Sbjct: 45  QLRELQVLKKSGRKVPFDRDKLARSVEVALRK--RSVD----------PDRVERLISGIV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            RL Q  +    V  E + + V  +L   G   +   YV +     D R A+ 
Sbjct: 93  RRLEQSGEQE--VRSEALGEMVMEAL--KGLDDVA--YVRFASVYRDFREARD 139


>gi|209549788|ref|YP_002281705.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535544|gb|ACI55479.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 990

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 101/359 (28%), Gaps = 52/359 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM----PQAFFMRVAMGLALKET 333
           L  L       RD  F               + G  IE+     +    R++M       
Sbjct: 322 LADLVAQQYKRRDMDFTRGSF---------RVRGDTIELFPAHLEDAAWRISMF------ 366

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQEN 390
             E  A+  ++ L+             + + +            ++ ++L      L++ 
Sbjct: 367 GDEIDAITEFDPLTGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKA 426

Query: 391 AMLA---KYSGGLGNDWTPVRGLGA------HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L    +       D   +   G+      +     G+  G  P           +   
Sbjct: 427 GRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDPPP-----TLFEYIPDN 481

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
                    +++  H+ V +   + +  GD RR+         +P     R  +   W  
Sbjct: 482 ------ALVFIDESHVTVPQIGGMYR--GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 533

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI---SAVALWRKMLTMLFETGH 558
             PD ++      G E E +   +  Q  R    +   +   SA      +L  + ET  
Sbjct: 534 MRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQVDDVLGEIRETAA 593

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
               ++  C + + +    +    +          S+   +  L  I +L       FD
Sbjct: 594 KG--YRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSD---IDTLERIEILRDLRLGAFD 647


>gi|254562343|ref|YP_003069438.1| NrdR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269621|emb|CAX25592.1| transcriptional regulator NrdR [Methylobacterium extorquens DM4]
          Length = 185

 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RTVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL    +    V  E I + V   L   G   +   YV +     + R AQ        
Sbjct: 93  RRLESGGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQDFQDLLGT 146

Query: 141 IAPKLK 146
           +  +L+
Sbjct: 147 LGERLE 152


>gi|240139919|ref|YP_002964396.1| transcriptional regulator NrdR [Methylobacterium extorquens AM1]
 gi|240009893|gb|ACS41119.1| transcriptional regulator NrdR [Methylobacterium extorquens AM1]
          Length = 173

 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L     
Sbjct: 33  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RTVDPERVERLVSGIT 80

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL    +    V  E I + V   L   G   +   YV +     + R AQ        
Sbjct: 81  RRLESGGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQDFQDLLGT 134

Query: 141 IAPKLK 146
           +  +L+
Sbjct: 135 LGERLE 140


>gi|307718382|ref|YP_003873914.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306532107|gb|ADN01641.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K + VIK++G    F+ +KI + I++A   VE    S    +++++  + E+    L 
Sbjct: 45  EEKPLMVIKKSGRREPFERTKIEKGILRA---VEKLPVS-GKTIEEMVNRIEER--AALY 98

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 +   +  + D V   L   G   +   Y+ +     + R  ++  +    I   
Sbjct: 99  DPVAREIPTSV--LGDMVLEEL--RGLDFVA--YIRFASVYKNFRDLKAFLEEIGHIQKT 152

Query: 145 LKIMM 149
             +  
Sbjct: 153 NNVTR 157


>gi|322793183|gb|EFZ16847.1| hypothetical protein SINV_11516 [Solenopsis invicta]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
           +  ++  ++  L + + Y+RDF ++          + L +NG  +E      +RVA+G+ 
Sbjct: 13  YYQIIQSNVDKLNSVIIYDRDFNYK--------SDHLLKLNGKIVERSVQL-IRVAVGIH 63

Query: 330 LK 331
           + 
Sbjct: 64  ID 65


>gi|222099869|ref|YP_002534437.1| Transcriptional repressor nrdR [Thermotoga neapolitana DSM 4359]
 gi|254768036|sp|B9K7Y8|NRDR_THENN RecName: Full=Transcriptional repressor NrdR
 gi|221572259|gb|ACM23071.1| Transcriptional repressor nrdR [Thermotoga neapolitana DSM 4359]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   V VIK++G    FD +KI   ++KA               + +  +  E+ V R+ 
Sbjct: 45  EEAPVLVIKKDGRREKFDRNKIKNGMIKAC------------EKRPVTYDQIEEAVNRIC 92

Query: 85  QHNKSALIVHIE--DIQDQVECSLMQSGHHKITREYVLYREERS 126
              +   +  +E   I + V   L +       R   +YR+ R 
Sbjct: 93  LKLREEGLFEVETKKIGELVMEELKKLDQVAYVRFASVYRDFRE 136


>gi|23008994|ref|ZP_00050210.1| COG1327: Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains [Magnetospirillum
           magnetotacticum MS-1]
          Length = 185

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K             +   + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RLVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            RL    +    V  E I + V   L   G   +   YV +     + R AQ 
Sbjct: 93  RRLESSGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQD 139


>gi|332795897|ref|YP_004457397.1| ATP-cone domain-containing protein [Acidianus hospitalis W1]
 gi|332693632|gb|AEE93099.1| ATP-cone domain-containing protein [Acidianus hospitalis W1]
          Length = 188

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 39/174 (22%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +VIKR+G    +   K+  A+++A  +                  + ++ V  + +  K
Sbjct: 2   TKVIKRSGEEEEYLSDKLYNALIRAGAS----------------DEVAKEIVKEIDERVK 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +  ++I                 R YVL R ++ +   A +    D       +I 
Sbjct: 46  EREKISTDEI-----------------RRYVLTRLQQLEPEVADAWQFYDRVFKG--RIT 86

Query: 149 MDDGTLISFNSKRL---EMIVEEACSGLQDVS-SKIVLSETYKNMYDGLSESDL 198
            ++G  I  +  +L     + +    GL++    K +L E  ++M  GLS   +
Sbjct: 87  FENGKAIVVDKGKLYLGRKVKDFNGKGLENAEQVKEILDELKEDMDYGLSPKVI 140


>gi|269219556|ref|ZP_06163410.1| transcriptional regulator NrdR [Actinomyces sp. oral taxon 848
          str. F0332]
 gi|269210798|gb|EEZ77138.1| transcriptional regulator NrdR [Actinomyces sp. oral taxon 848
          str. F0332]
          Length = 141

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          +   +QVIKR+G    F   KI   + KA            +  +D +  L +    R+ 
Sbjct: 30 ETASLQVIKRSGAYEPFSRGKIISGVGKACQ--------GRLVSEDDLARLAQLVEERIR 81

Query: 85 QHNKSALIVH 94
           +  S +  H
Sbjct: 82 ANGASQIEAH 91


>gi|218531425|ref|YP_002422241.1| NrdR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254768018|sp|B7KUT4|NRDR_METC4 RecName: Full=Transcriptional repressor NrdR
 gi|218523728|gb|ACK84313.1| ATP-cone domain protein [Methylobacterium chloromethanicum CM4]
          Length = 185

 Score = 42.0 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 22/125 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RTVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL    +    V  E I + V   L   G   +   YV +     + R AQ        
Sbjct: 93  RRLESGGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQDFQDLLGT 146

Query: 141 IAPKL 145
           +  +L
Sbjct: 147 LGERL 151


>gi|288932406|ref|YP_003436466.1| restriction endonuclease [Ferroglobus placidus DSM 10642]
 gi|288894654|gb|ADC66191.1| restriction endonuclease [Ferroglobus placidus DSM 10642]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DG L  F+  ++        SG     ++ VL +  + +YDG++  ++   +I 
Sbjct: 2   VRVRKKDGRLEEFDRTKVLKTC--LRSGANVEIAEKVLRDVEERLYDGITTDEILEIVIE 59

Query: 205 S 205
           S
Sbjct: 60  S 60



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 22/101 (21%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V K++G +  FD +K+ +  +++   VE                + E+ +  + +   
Sbjct: 2   VRVRKKDGRLEEFDRTKVLKTCLRSGANVE----------------IAEKVLRDVEERLY 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             +     +I + V  SL++ G+ K       Y  ++S +R
Sbjct: 46  DGITTD--EILEIVIESLLKHGYEKAA----TYDLKQSLLR 80


>gi|116252704|ref|YP_768542.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257352|emb|CAK08447.1| putative UVRABC system protein B (UvrB protein) (excinuclease ABC
           subunit B) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1009

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 102/359 (28%), Gaps = 52/359 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM----PQAFFMRVAMGLALKET 333
           L  L       RD  F               + G  IE+     +    R++M       
Sbjct: 333 LADLVAQQYKRRDMDFTRGSF---------RVRGDTIELFPAHLEDAAWRISMF------ 377

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQEN 390
             E  A+  ++ L+             + + +            ++ ++L      L++ 
Sbjct: 378 GDEIDAITEFDPLTGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKA 437

Query: 391 AMLA---KYSGGLGNDWTPVRGLGA------HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L    +       D   +   G+      +     G+  G  P           +   
Sbjct: 438 GRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDPPP-----TLFEYIPDN 492

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
                    +++  H+ V +   + +  GD RR+         +P     R  +   W  
Sbjct: 493 ------ALVFIDESHVTVPQIGGMYR--GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 544

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI---SAVALWRKMLTMLFETGH 558
             PD ++      G E E +   +  Q  R    +   +   SA +    +L  + ET  
Sbjct: 545 MRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAA 604

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
               ++  C + + +    +    +          S+   +  L  I +L       FD
Sbjct: 605 KG--YRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSD---IDTLERIEILRDLRLGAFD 658


>gi|308189612|ref|YP_003922543.1| phosphotriesterase family protein [Mycoplasma fermentans JER]
 gi|307624354|gb|ADN68659.1| phosphotriesterase family protein [Mycoplasma fermentans JER]
          Length = 353

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 86/253 (33%), Gaps = 32/253 (12%)

Query: 104 CSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLE 163
             +M +G HK  + Y  Y    ++V          A I   + +   +G +      + +
Sbjct: 92  NIIMSTGFHK-AKFYDKYCSWLANVPTDDIVKMCVAEIEEGMDVYNYNGPV--VKRGKAK 148

Query: 164 MIVEEACSGLQDVSS---KIVLSETYKNMYDGLSE---SDLETALIFSSRTLIEKEPNYA 217
             + +A +G   +     K +      ++  G      + L T  +  ++ LI    ++ 
Sbjct: 149 AGIIKAGTGYAAIDRLELKALEVAARTSITTGCPILVHTQLGTMALEVAQHLI----DFG 204

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA--RLLHESMMD 275
               +  +  L +      Y+K  K T   +    P+    Y +  +    + L +  + 
Sbjct: 205 ANPRKIQISHLNKNPDPYYYEKVIKDTGVTLCLDGPDRVKYYPDSTLADNIKYLVDQGLQ 264

Query: 276 FDLVYLAND--LKYERDFAFE----YLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMG 327
             +    +   + Y+R++         G   L+DR+   L   G    +PQ     + + 
Sbjct: 265 KHITLSLDAGRILYQRNYGLTKGKETFGFSYLFDRFIPLLKKVG----VPQDAIDDILIN 320

Query: 328 -----LALKETEK 335
                LA  E  K
Sbjct: 321 NPRDILAFDEPRK 333


>gi|255988561|gb|ACU51164.1| vitellogenin [Pandalopsis japonica]
          Length = 2533

 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 79/223 (35%), Gaps = 31/223 (13%)

Query: 58   EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDI-Q----DQVECSLMQSGHH 112
            EG  +  S ++  + +++  +            +I  +E I Q    D V      SG+ 
Sbjct: 2012 EGGSSPPSAQMARLWQDIKAEASRLYEDLEYDCVIPSVEKIKQCARSDIVRNV--ASGYF 2069

Query: 113  KITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
            K+   YV            Q   +  + ++  ++ +  +          +  I+ EA  G
Sbjct: 2070 KLWSHYV------------QIQHRMASSVSNAMRTIQSE-------FDDIAKIIIEAVMG 2110

Query: 173  LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
                     + E  ++++  + E+ +   +     +++ + P          L+++  +V
Sbjct: 2111 SARSLQTGEMPEGIRSLWSQMRETAIFRTVQRELDSMLSQYPE-----EYQGLQQMVEKV 2165

Query: 233  LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
             +T+     K  H+ MQ   P +   +I   +    +    MD
Sbjct: 2166 KSTLANDFAKQRHNLMQHSKPRHMINWINNHLDFDRMMFKCMD 2208


>gi|169823779|ref|YP_001691390.1| hypothetical protein FMG_0082 [Finegoldia magna ATCC 29328]
 gi|167830584|dbj|BAG07500.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI       F ++     S   ++     N+  + V + ++  K  
Sbjct: 45  VLKKLGSVESFDKEKI-------FHSIAQTSDSSGAKMNASDVNIIVEDVLKKMKSIKRN 97

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
           +    E I+  VE +L + G+ K+   Y
Sbjct: 98  VYPTTE-IRGYVEEALKEEGYGKVLEAY 124


>gi|18311662|ref|NP_558329.1| hypothetical protein PAE0026 [Pyrobaculum aerophilum str. IM2]
 gi|18159059|gb|AAL62511.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 91

 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
          V+V+KR+G V  F P KI  +++KA   V+
Sbjct: 2  VKVVKRDGRVEEFIPEKIVVSVLKAGAPVD 31


>gi|46205558|ref|ZP_00048379.2| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 70

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 93  VHIEDIQDQVECSLMQSGHHK-ITREYVLYREERSDVRAAQSHSKSD 138
           V I +IQ  VE       H+K + R Y+ YR +R   R  +     +
Sbjct: 7   VDISEIQTAVENQRRSRAHYKQLARAYIEYRHDRDSQREKRGRLNQE 53


>gi|241205212|ref|YP_002976308.1| excinuclease ABC subunit B [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859102|gb|ACS56769.1| excinuclease ABC, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 997

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 102/359 (28%), Gaps = 52/359 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM----PQAFFMRVAMGLALKET 333
           L  L       RD  F               + G  IE+     +    R++M       
Sbjct: 333 LADLVAQQYKRRDMDFTRGSF---------RVRGDTIELFPAHLEDAAWRISMF------ 377

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQEN 390
             E  A+  ++ L+             + + +            ++ ++L      L++ 
Sbjct: 378 GDEIDAITEFDPLTGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKA 437

Query: 391 AMLA---KYSGGLGNDWTPVRGLGA------HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L    +       D   +   G+      +     G+  G  P           +   
Sbjct: 438 GRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDPPP-----TLFEYIPDN 492

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
                    +++  H+ V +   + +  GD RR+         +P     R  +   W  
Sbjct: 493 ------ALVFIDESHVTVPQIGGMYR--GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 544

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI---SAVALWRKMLTMLFETGH 558
             PD ++      G E E +   +  Q  R    +   +   SA +    +L  + ET  
Sbjct: 545 MRPDTIAVSATPGGWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAA 604

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
               ++  C + + +    +    +          S+   +  L  I +L       FD
Sbjct: 605 KG--YRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSD---IDTLERIEILRDLRLGAFD 658


>gi|319776765|ref|YP_004136416.1| hypothetical protein MfeM64YM_0028 [Mycoplasma fermentans M64]
 gi|318037840|gb|ADV34039.1| Conserved Hypothetical Protein [Mycoplasma fermentans M64]
          Length = 353

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 86/253 (33%), Gaps = 32/253 (12%)

Query: 104 CSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLE 163
             +M +G HK  + Y  Y    ++V          A I   + +   +G +      + +
Sbjct: 92  NIIMSTGFHK-AKFYDKYCSWLANVPTDDIVKMCVAEIEEGMDVYNYNGPV--VKRGKAK 148

Query: 164 MIVEEACSGLQDVSS---KIVLSETYKNMYDGLSE---SDLETALIFSSRTLIEKEPNYA 217
             + +A +G   +     K +      ++  G      + L T  +  ++ LI    ++ 
Sbjct: 149 AGIIKAGTGYAAIDRLELKALEVAARTSITTGCPILVHTQLGTMALEVAQHLI----DFG 204

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA--RLLHESMMD 275
               +  +  L +      Y+K  K T   +    P+    Y +  +    + L +  + 
Sbjct: 205 ANPRKIQISHLNKNPDPYYYEKVIKDTGVTLCLDGPDRVKYYPDSTLADNIKYLVDQGLQ 264

Query: 276 FDLVYLAND--LKYERDFAFE----YLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMG 327
             +    +   + Y+R++         G   L+DR+   L   G    +PQ     + + 
Sbjct: 265 KHITLSLDAGRILYQRNYGLTKGKETFGFSYLFDRFIPLLKKVG----VPQDAIDDILIN 320

Query: 328 -----LALKETEK 335
                LA  E  K
Sbjct: 321 NPREILAFDEPRK 333


>gi|195119231|ref|XP_002004135.1| GI18283 [Drosophila mojavensis]
 gi|193914710|gb|EDW13577.1| GI18283 [Drosophila mojavensis]
          Length = 68

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSE 184
           K+++  + KL ++  DG     +  ++   +++ C  L    V    ++S 
Sbjct: 3   KTNSLKSAKLYVIKRDGRKEEIHFDKITSRIQKLCYNLNMDFVDPVSIMSN 53


>gi|332292994|ref|YP_004431603.1| hypothetical protein Krodi_2357 [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171080|gb|AEE20335.1| hypothetical protein Krodi_2357 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 279

 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           I   +++    G  + F+ ++L+  +  + +G  DVS   +L+     +Y G+S  ++  
Sbjct: 2   IKKSIQVKKSSGEKVDFSLEKLKASLHRSGAGENDVS--HILNIVRDELYQGISTKEIYN 59


>gi|312868358|ref|ZP_07728558.1| tetratricopeptide repeat protein [Streptococcus parasanguinis
           F0405]
 gi|311096103|gb|EFQ54347.1| tetratricopeptide repeat protein [Streptococcus parasanguinis
           F0405]
          Length = 978

 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 154 LISFNSKRLEMIVEE-------ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   + + +  IVEE        C  L  +    +LS   + ++       LE +L  ++
Sbjct: 527 IEPLSERAVVSIVEEGEALMVQFCKQLVAMYFYHLLSPARRRLFHQQIAQKLEESLEDAT 586

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             L+ KE  Y     +     LR       Y +      HE+  +Y +     + +G  +
Sbjct: 587 DLLLYKETAYQY---KQSQNLLRSLSFELTYLEEILQLEHELFPIYSKADEGLLSDGSNS 643

Query: 267 RLLHESMMDFDLVYLANDL-KYERDFAFEYLGLQILY--DRYFLH 308
            L     +      L N   +++RD  ++YL L+ LY   RYF+ 
Sbjct: 644 HLDIFGELSRIRQELDNLFSRHQRDREYKYLQLRYLYLEGRYFIR 688


>gi|171185433|ref|YP_001794352.1| ATP-cone domain-containing protein [Thermoproteus neutrophilus
          V24Sta]
 gi|170934645|gb|ACB39906.1| ATP-cone domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 91

 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTRLL 84
          V+V+KR+G    F P KI  +++KA   V+   K A +        +N+T Q +TR++
Sbjct: 2  VKVVKRDGRTEEFIPEKIVVSVLKAGAPVDVARKIARKVECAVMERENVTAQELTRMI 59


>gi|92117360|ref|YP_577089.1| transcriptional regulator NrdR [Nitrobacter hamburgensis X14]
 gi|119372209|sp|Q1QMB8|NRDR_NITHX RecName: Full=Transcriptional repressor NrdR
 gi|91800254|gb|ABE62629.1| Protein of unknown function DUF193 [Nitrobacter hamburgensis X14]
          Length = 160

 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R                S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVR------------SLQISLRKRPVEPERVETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +  +S     I  E I + V   L       +   YV +     + R A+ 
Sbjct: 93  RELESGGEAEISSEIIGEIVMEHL--RSLDDVA--YVRFASVYRNFREAKD 139


>gi|257373023|ref|YP_003175797.1| NrdR family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|310947290|sp|C7P544|NRDR_HALMD RecName: Full=Transcriptional repressor NrdR
 gi|257167747|gb|ACV49439.1| ATP-cone domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 162

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 28 GVQVIKRNGGVTSFDPSK----ISRAIMK 52
           +QV KR+G + SFD  K    I RA+ K
Sbjct: 48 SLQVKKRDGTIESFDRQKLRAGIERAVEK 76


>gi|153011315|ref|YP_001372529.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563203|gb|ABS16700.1| helix-turn-helix- domain containing protein AraC type [Ochrobactrum
           anthropi ATCC 49188]
          Length = 318

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 28/194 (14%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
             R  + +              ++    +  ++SF++     +V  A   L       + 
Sbjct: 116 STRMLIFSLNDTQIDILGGKEFIEQFTHNKRVVSFDT-----LVGHAFYQLAHFVINEIE 170

Query: 183 SETYKNMYDGLSE---SDLETALIFS------SRTLIEKEPNYAKVTARFLLEKLRRE-- 231
            +     + GLSE     L  +L  +      +R L    P+Y +   +F+L+ L ++  
Sbjct: 171 KDKEAFFHGGLSERLEDSLMASLAAALDTQPRARPLTSAVPSYVQRAEKFMLDNLDKQLT 230

Query: 232 ------VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
                    T  +   +             F     + V A L+       D+  +A   
Sbjct: 231 LQELVDATGTSARTLHRTFRSVRGNTPLGVFKNMRLDKVHAELVRGHAGPGDITRIAMA- 289

Query: 286 KYERDFAFEYLGLQ 299
                +AF ++GL 
Sbjct: 290 -----WAFNHMGLF 298


>gi|304439984|ref|ZP_07399877.1| transcriptional regulator NrdR [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371476|gb|EFM25089.1| transcriptional regulator NrdR [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 150

 Score = 41.7 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   +FDP KI   I+K+      K      ++ +I+  +       + +  +S 
Sbjct: 51  VVKRDGNRQTFDPEKIRIGIIKSC----EKRPVNIEKIDEIVNEVERNIRNTMKREVQSD 106

Query: 91  LIVHI 95
            I  I
Sbjct: 107 EIGEI 111


>gi|188582605|ref|YP_001926050.1| NrdR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|226733006|sp|B1ZJM9|NRDR_METPB RecName: Full=Transcriptional repressor NrdR
 gi|179346103|gb|ACB81515.1| ATP-cone domain protein [Methylobacterium populi BJ001]
          Length = 185

 Score = 41.7 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K                 + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RTVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            RL    +    V  E I + V   L   G   +   YV +     + R AQ 
Sbjct: 93  RRLESGGEGE--VTSEAIGEAVMEGL--KGLDDVA--YVRFASVYKNFREAQD 139


>gi|152965476|ref|YP_001361260.1| ATP-cone domain protein [Kineococcus radiotolerans SRS30216]
 gi|189030555|sp|A6W857|NRDR_KINRD RecName: Full=Transcriptional repressor NrdR
 gi|151359993|gb|ABS02996.1| ATP-cone domain protein [Kineococcus radiotolerans SRS30216]
          Length = 163

 Score = 41.7 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKR+G    F  +KI+  + KA           ++    + + +  Q    + 
Sbjct: 42  ETASLSVIKRSGAPEPFSRAKIASGVRKACQGRPVSEDDIALLAHRVEEAVRAQGAAEID 101

Query: 85  QH 86
            H
Sbjct: 102 AH 103


>gi|302382995|ref|YP_003818818.1| ATP-cone domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193623|gb|ADL01195.1| ATP-cone domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 158

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 22/109 (20%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISR--AIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           +++ + ++KRNG  T FD  K+ R  AI              ++R + I     EQ V+R
Sbjct: 45  QLRELVILKRNGRRTPFDRDKLERSLAI--------------ALRKRPIQPEQVEQMVSR 90

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQS--GHHKITREYVLYREERSDVR 129
           +++  +S     I      V   +M++  G  ++   YV Y     D R
Sbjct: 91  IVRQLESLGETEIPS--SVVGDFIMKALKGVDEVA--YVRYASVYKDFR 135


>gi|238810133|dbj|BAH69923.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 359

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 86/253 (33%), Gaps = 32/253 (12%)

Query: 104 CSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLE 163
             +M +G HK  + Y  Y    ++V          A I   + +   +G +      + +
Sbjct: 98  NIIMSTGFHK-AKFYDKYCSWLANVPTDDIVKMCVAEIEEGMDVYNYNGPV--VKRGKAK 154

Query: 164 MIVEEACSGLQDVSS---KIVLSETYKNMYDGLSE---SDLETALIFSSRTLIEKEPNYA 217
             + +A +G   +     K +      ++  G      + L T  +  ++ LI    ++ 
Sbjct: 155 AGIIKAGTGYAAIDRLELKALEVAARTSITTGCPILVHTQLGTMALEVAQHLI----DFG 210

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA--RLLHESMMD 275
               +  +  L +      Y+K  K T   +    P+    Y +  +    + L +  + 
Sbjct: 211 ANPRKIQISHLNKNPDPYYYEKVIKDTGVTLCLDGPDRVKYYPDSTLADNIKYLVDQGLQ 270

Query: 276 FDLVYLAND--LKYERDFAFE----YLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMG 327
             +    +   + Y+R++         G   L+DR+   L   G    +PQ     + + 
Sbjct: 271 KHITLSLDAGRILYQRNYGLTKGKETFGFSYLFDRFIPLLKKVG----VPQDAIDDILIN 326

Query: 328 -----LALKETEK 335
                LA  E  K
Sbjct: 327 NPREILAFDEPRK 339


>gi|160901646|ref|YP_001567227.1| transcriptional regulator NrdR [Petrotoga mobilis SJ95]
 gi|189029251|sp|A9BFB9|NRDR_PETMO RecName: Full=Transcriptional repressor NrdR
 gi|160359290|gb|ABX30904.1| ATP-cone domain protein [Petrotoga mobilis SJ95]
          Length = 150

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IK++G    +D  K+   I+KA      K    + ++++I+ N+ EQ          
Sbjct: 49  IRIIKKDGRRELYDRKKLMNGILKAC----EKRPVSTDQIEEIVDNIEEQL------RRS 98

Query: 89  SALIVHIEDIQDQVECSL 106
               ++  +I D+V   L
Sbjct: 99  GNSEIYSSEIGDKVMEQL 116


>gi|332523139|ref|ZP_08399391.1| sensory transduction protein LytT [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314403|gb|EGJ27388.1| sensory transduction protein LytT [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 243

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 32/151 (21%)

Query: 40  SFDPSKISRAIMKA--FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97
            F+ ++I +AI KA   + V+       I+    ++ LT +T  R+     S +I    +
Sbjct: 102 PFEETRIKKAIEKAKLALEVQNANYLSQIKADKTVERLTIETDERIYLLPFSDIIYC--E 159

Query: 98  IQ-------------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +Q                     +E +L      K+ R Y++ +EE  +++   +     
Sbjct: 160 VQGKETTVYTKKGSYTSHTSLSAIEKNLTSDRFLKVHRAYIINQEEIKEIQPWFNQ---- 215

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                  ++ M +   +  +   ++   ++ 
Sbjct: 216 -----TYQVTMSNQGKVPVSRSYIKSFKQQL 241


>gi|257456080|ref|ZP_05621283.1| transcriptional regulator NrdR [Treponema vincentii ATCC 35580]
 gi|257446538|gb|EEV21578.1| transcriptional regulator NrdR [Treponema vincentii ATCC 35580]
          Length = 157

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
          + K + VIKRNG    FD SK+ R I ++      K       +++I+ ++ +  V
Sbjct: 45 EEKPLMVIKRNGRREPFDRSKLERGIERSL----EKRPISMNEIENIVSDIEDAAV 96


>gi|189219224|ref|YP_001939865.1| transcriptional regulator [Methylacidiphilum infernorum V4]
 gi|226733005|sp|B3DVB4|NRDR_METI4 RecName: Full=Transcriptional repressor NrdR
 gi|189186082|gb|ACD83267.1| Predicted transcriptional regulato, contains Zn-ribbon and
          ATP-cone domains [Methylacidiphilum infernorum V4]
          Length = 166

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
          V KRNG +  FD +K+   I KA      K      +++D +  + E+    
Sbjct: 51 VKKRNGSIEQFDRNKLMIGIQKAL----EKRPITQSQIEDFVDQIIEECSAE 98


>gi|315127404|ref|YP_004069407.1| L-aspartate oxidase [Pseudoalteromonas sp. SM9913]
 gi|315015918|gb|ADT69256.1| L-aspartate oxidase [Pseudoalteromonas sp. SM9913]
          Length = 536

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 32/162 (19%)

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVAND---------TAVAVNQGGKRKGAVCAYLETWHI 457
           +RG GA++   +G       F+K  ++          A A++   KR GA C YL+  H 
Sbjct: 262 MRGEGAYLKRPDGTR-----FMKEFDEREELAPRDIVARAIDFEMKRLGANCLYLDISHK 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM-----KRVTQNAGWTLFSPDEVSDLHD 512
           D ++F+     T         ++    I    +        T     T F+     DL +
Sbjct: 317 D-KDFIIEHFPT----IYAKCLSVGLDITKEAIPVVPAAHYTCGGVMTDFNGKT--DLAN 369

Query: 513 LYGKEFEIAYENYE---RQADRG--EIKVFRKISAVALWRKM 549
           LY    E+AY       R A     E  VF   +A  +  K+
Sbjct: 370 LY-AVGEVAYTGLHGANRMASNSLLECIVFAHAAAKDILSKI 410


>gi|295692017|ref|YP_003600627.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus ST1]
 gi|295030123|emb|CBL49602.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus ST1]
          Length = 735

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F       AI K  M +              + N+    + +++    +A 
Sbjct: 21  VKRDGSKYPF-------AIFKLNMVLHNLD----------LDNVAPAVIEKIVAKLDAAD 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD----VRAAQSHSKSDAPIAPKLKI 147
            V+ +D+      SL + G+    + YV YR+   +        ++  K      P +  
Sbjct: 64  EVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPTIVN 123

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 124 ENANKDSEVFSTQR 137


>gi|227877901|ref|ZP_03995912.1| ribonucleoside-triphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|256844293|ref|ZP_05549779.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus 125-2-CHN]
 gi|227862504|gb|EEJ70012.1| ribonucleoside-triphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|256613371|gb|EEU18574.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 735

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F       AI K  M +              + N+    + +++    +A 
Sbjct: 21  VKRDGSKYPF-------AIFKLNMVLHNLD----------LDNVAPAVIEKIVAKLDAAD 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD----VRAAQSHSKSDAPIAPKLKI 147
            V+ +D+      SL + G+    + YV YR+   +        ++  K      P +  
Sbjct: 64  EVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPTIVN 123

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 124 ENANKDSEVFSTQR 137


>gi|293381563|ref|ZP_06627551.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus 214-1]
 gi|312976948|ref|ZP_07788697.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus CTV-05]
 gi|290921882|gb|EFD98896.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus 214-1]
 gi|310896276|gb|EFQ45341.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus CTV-05]
          Length = 735

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F       AI K  M +              + N+    + +++    +A 
Sbjct: 21  VKRDGSKYPF-------AIFKLNMVLHNLD----------LDNVAPAVIEKIVAKLDAAD 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD----VRAAQSHSKSDAPIAPKLKI 147
            V+ +D+      SL + G+    + YV YR+   +        ++  K      P +  
Sbjct: 64  EVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPTIVN 123

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 124 ENANKDSEVFSTQR 137


>gi|256849307|ref|ZP_05554740.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus MV-1A-US]
 gi|262047675|ref|ZP_06020629.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus MV-3A-US]
 gi|256714083|gb|EEU29071.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus MV-1A-US]
 gi|260572075|gb|EEX28641.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           crispatus MV-3A-US]
          Length = 735

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F       AI K  M +              + N+    + +++    +A 
Sbjct: 21  VKRDGSKYPF-------AIFKLNMVLHNLD----------LDNVAPAVIEKIVAKLDAAD 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD----VRAAQSHSKSDAPIAPKLKI 147
            V+ +D+      SL + G+    + YV YR+   +        ++  K      P +  
Sbjct: 64  EVNAQDVAVAFRDSLNELGYLDEAKAYVQYRKHDEEEWIKQTDTRARLKRMVNGDPTIVN 123

Query: 148 MMDDGTLISFNSKR 161
              +     F+++R
Sbjct: 124 ENANKDSEVFSTQR 137


>gi|229823046|ref|ZP_04449115.1| hypothetical protein GCWU000282_00341 [Catonella morbi ATCC 51271]
 gi|229787485|gb|EEP23599.1| hypothetical protein GCWU000282_00341 [Catonella morbi ATCC 51271]
          Length = 158

 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 24/104 (23%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMA---VEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           VIKR+G    F   K+ R I+++         +  + + +V++ I+ +T+Q +       
Sbjct: 51  VIKRDGTREEFSQEKLLRGIVRSAEKRPITMEQMQALAQQVENKIREITDQEIES----- 105

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYREERSD 127
                   E I + V   LM+         Y+    +YR+  S 
Sbjct: 106 --------EQIGEFVIPLLMELDEV----AYIRFASVYRQFHSR 137


>gi|329889479|ref|ZP_08267822.1| transcriptional regulator NrdR [Brevundimonas diminuta ATCC 11568]
 gi|328844780|gb|EGF94344.1| transcriptional regulator NrdR [Brevundimonas diminuta ATCC 11568]
          Length = 157

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISR----AIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + ++KRNG  T FD  K+ R    A+ K                 D ++ L  + V
Sbjct: 45  QLRELVILKRNGRRTPFDRDKLERSLGIALRK------------RPVQPDQVELLVSRIV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +L    ++ +  HI  + D +  +L           YV Y     D R 
Sbjct: 93  RQLESLGETEIPSHI--VGDFIMKALKSVDEV----AYVRYASVYKDFRH 136


>gi|114562212|ref|YP_749725.1| transcriptional regulator NrdR [Shewanella frigidimarina NCIMB 400]
 gi|119372226|sp|Q086C8|NRDR_SHEFN RecName: Full=Transcriptional repressor NrdR
 gi|114333505|gb|ABI70887.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 149

 Score = 41.3 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  K+   +++A   VE     R + + +I + LT +  + L      
Sbjct: 50  RVIKRDGTRQPFDEEKLRGGMLRA---VEK----RPVSIDEIEQALT-KIKSTL--RATG 99

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              V+ E I + +   LM     K+   Y+    +YR 
Sbjct: 100 EREVNSEMIGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|302379867|ref|ZP_07268350.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235394|ref|ZP_07322011.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302312345|gb|EFK94343.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493515|gb|EFL53304.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 127

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI       F ++     S   ++     N+  + V + ++  K  
Sbjct: 45  VLKKLGSVESFDKEKI-------FHSIAQTSDSAGAKMNASDVNIIVEDVLKKMKSIKRN 97

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
           +    ++I+  VE +L + G+ K+   Y
Sbjct: 98  VYPT-KEIRGYVEEALKEEGYGKVLEAY 124


>gi|15644455|ref|NP_229507.1| transcriptional regulator NrdR [Thermotoga maritima MSB8]
 gi|18203591|sp|Q9X233|NRDR_THEMA RecName: Full=Transcriptional repressor NrdR
 gi|4982284|gb|AAD36774.1|AE001810_13 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 156

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   V V+K++G    FD  KI   ++KA               + +     E+ V R+ 
Sbjct: 45  EEAPVLVVKKDGRREKFDREKIKNGMIKAC------------EKRPVTYEQIEEAVNRIC 92

Query: 85  QHNKSALIVHIE--DIQDQVECSLMQSGHHKITREYVLYREERS 126
              +      +E   I + V   L +       R   +YR+ R 
Sbjct: 93  LKLREEGSFEVETKRIGELVMEELKKLDQVAYVRLASVYRDFRE 136


>gi|212697142|ref|ZP_03305270.1| hypothetical protein ANHYDRO_01708 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675917|gb|EEB35524.1| hypothetical protein ANHYDRO_01708 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 663

 Score = 41.3 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%)

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           +L +  ++   + I  I+D+V   L+   +    + Y  YR  ++  RAA +       +
Sbjct: 2   KLKKSVENKREISIYQIEDRVYYKLIDKKNPATAKSYEAYRSVQAYKRAANTTDDDIIGL 61

Query: 142 APKLKIMMDD 151
             +  I + D
Sbjct: 62  LERTNIDVMD 71


>gi|300362538|ref|ZP_07058714.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus gasseri JV-V03]
 gi|300353529|gb|EFJ69401.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus gasseri JV-V03]
          Length = 738

 Score = 41.3 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                  ++ + +   ++    + +L    +++ 
Sbjct: 23  IKRDGSIYPFALYKIEM-------------VLDNLHLTEHEADILPSILKKLNGVKQTST 69

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
                DI D    +L + G       YV YR      R  +++ +       +L +++  
Sbjct: 70  K----DIADAFVQTLTELGFDDEANAYVDYR------REDEANFEKQTETTNRLDRLVHH 119

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 120 DPTIVNENANKDSRVFS 136


>gi|217968077|ref|YP_002353583.1| ATP-cone domain protein [Dictyoglomus turgidum DSM 6724]
 gi|226732980|sp|B8E395|NRDR_DICTD RecName: Full=Transcriptional repressor NrdR
 gi|217337176|gb|ACK42969.1| ATP-cone domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 150

 Score = 41.3 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K + VIK++G    FD +K+   + +A +            + +II N+ +Q V+ + 
Sbjct: 45  EEKPIMVIKKDGRREPFDRNKLLAGLQRAVVKRNIDNEKLEAIIDEIITNIRKQGVSEIT 104

Query: 85  QHNKSALIVHIEDIQDQ 101
                 +++  E ++D 
Sbjct: 105 SKEIGKMVL--EKLKDL 119


>gi|114570086|ref|YP_756766.1| ribonucleotide reductase regulator NrdR-like protein [Maricaulis
           maris MCS10]
 gi|119372203|sp|Q0APF9|NRDR_MARMM RecName: Full=Transcriptional repressor NrdR
 gi|114340548|gb|ABI65828.1| Ribonucleotide reductase regulator NrdR-like protein [Maricaulis
           maris MCS10]
          Length = 161

 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 27/129 (20%)

Query: 2   HPSKDVNKGDEDAF-PSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P++D N        PS A  F      +++ + V+K++G    FD  K    I  A+ K
Sbjct: 17  RPAEDGNAIRRRRQCPSCAARFTTFERVQLRELTVMKKSGRRVPFDREKLNRSIQLAMQK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                           ++I  +  +Q ++ +++  +S     +    D+V   +M+   +
Sbjct: 77  ----------------RNIEPDRIDQMISGIVRRLESTGETDVTS--DRVGELVMEGLKN 118

Query: 113 KITREYVLY 121
                YV Y
Sbjct: 119 LDAVAYVRY 127


>gi|167944989|ref|ZP_02532063.1| transcriptional regulator NrdR [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 122

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+K++G    FD  K+   + +A      K    + RV   I ++T +  T+  +   S
Sbjct: 38  QVVKQDGSRVPFDEDKLRAGMERA----LEKRPVSAERVDAAISHITRKLTTKGEREIPS 93

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
                   I D V   L +    ++   YV +   R+ 
Sbjct: 94  L------QIGDLVMDELKRLD--QVA--YVRFALGRTR 121


>gi|227903059|ref|ZP_04020864.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus ATCC 4796]
 gi|227869192|gb|EEJ76613.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 731

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+ +KR+G    F+  K+   I        G    +++ +  I+  L E+ V+      
Sbjct: 13  PVKFVKRDGAKYPFELFKLEMVI-----HALGLDDVKAVILSKIVNKLDEKIVSA----- 62

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   +D+ D    SL + G+ +  ++YV YR+
Sbjct: 63  --------QDVADAFRVSLNELGYIEAAKKYVSYRK 90


>gi|58336507|ref|YP_193092.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus NCFM]
 gi|58253824|gb|AAV42061.1| anaerobic NTP reductase [Lactobacillus acidophilus NCFM]
          Length = 731

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+ +KR+G    F+  K+   I        G    +++ +  I+  L E+ V+      
Sbjct: 13  PVKFVKRDGAKYPFELFKLEMVI-----HALGLDDVKAVILSKIVNKLDEKIVSA----- 62

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
                   +D+ D    SL + G+ +  ++YV YR+
Sbjct: 63  --------QDVADAFRVSLNELGYIEAAKKYVSYRK 90


>gi|329575044|gb|EGG56596.1| ribonucleotide reductase [Enterococcus faecalis TX1467]
          Length = 116

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+  +   + +  MDF +  L   L  E+
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFFETEFIEKYSMDF-IEKLYAFLD-EQ 89

Query: 290 DFAF-EYLGLQILYDRYFLH 308
            F F  ++     Y +Y L 
Sbjct: 90  HFQFKSFMAAYKFYSQYALK 109


>gi|297283922|ref|XP_001107666.2| PREDICTED: cyclin-Y-like protein 1-like [Macaca mulatta]
          Length = 376

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 52/177 (29%), Gaps = 8/177 (4%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
            +     ++P       R  +    +  T P+          E A     +G  G+D   
Sbjct: 53  WNLLLPNASPKQNQRRVRWAEPPCSYNITEPEVAVAPHHTAVERAQPDLGAGQ-GHDLQH 111

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +          +   +    FL+    +        KR+ +   Y+  WH+D +      
Sbjct: 112 ISDQEMPKDFGSDHPRESTLFLRKYQISV-----QEKRRSSHLYYIPPWHLDRKYSSCST 166

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW--TLFSPDEVSDLHDLYGKEFEIA 521
               +      D+  A     L +    ++ GW  TL S   V      YG  F   
Sbjct: 167 ILLDNSTVSQPDLRYALESVTLAIYYNIKHRGWSRTLLSYTCVPYQGTEYGDYFSAT 223


>gi|254519973|ref|ZP_05132029.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913722|gb|EEH98923.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 89

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++K++G +  F+  K+  +I  A            + +      L       LL+  K
Sbjct: 1   MNIVKKDGRIEKFNIRKVKTSIENAARDSGTMVNESDLNI------LVNDVEKVLLKVRK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYV 119
            +L+    ++   +   L + G + I R YV
Sbjct: 55  DSLVTSSYEVIGTIFEILKRDGFNSILRAYV 85


>gi|225164358|ref|ZP_03726623.1| ATP-cone domain protein [Opitutaceae bacterium TAV2]
 gi|224801038|gb|EEG19369.1| ATP-cone domain protein [Opitutaceae bacterium TAV2]
          Length = 151

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+ V+KR+G    F+  K+ RAI  A           S+  +D+I  L  Q  + +    
Sbjct: 48  GIVVLKRDGRREDFERDKLIRAIRVASHKRPIDAEQISMLAEDVIDVLETQYDSEIPSSA 107

Query: 88  KSALIV-HIEDIQDQV 102
               ++ H+  I DQV
Sbjct: 108 IGDAVMQHLRKI-DQV 122


>gi|72383526|ref|YP_292881.1| transcriptional regulator NrdR [Prochlorococcus marinus str.
           NATL2A]
 gi|124025116|ref|YP_001014232.1| transcriptional regulator NrdR [Prochlorococcus marinus str.
           NATL1A]
 gi|91208015|sp|Q46H54|NRDR_PROMT RecName: Full=Transcriptional repressor NrdR
 gi|189029263|sp|A2C0F7|NRDR_PROM1 RecName: Full=Transcriptional repressor NrdR
 gi|72003376|gb|AAZ59178.1| Protein of unknown function DUF193 [Prochlorococcus marinus str.
           NATL2A]
 gi|123960184|gb|ABM74967.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Prochlorococcus marinus str. NATL1A]
          Length = 159

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KR+G    F+ SKI   + +A       G+     V +I   L +     + 
Sbjct: 45  ETTPINVLKRSGAKELFNRSKIINGLNRACEKTLIHGSKIEFIVDEIELELHQGVCKEIK 104

Query: 85  QHNKSALIV-HIEDI 98
                 +++ H++DI
Sbjct: 105 SIEIGEMVLTHLKDI 119


>gi|88807803|ref|ZP_01123314.1| hypothetical protein WH7805_06571 [Synechococcus sp. WH 7805]
 gi|88787842|gb|EAR18998.1| hypothetical protein WH7805_06571 [Synechococcus sp. WH 7805]
          Length = 158

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIKRNG   +F  SK+   + +A             R++ I+ +L       L+
Sbjct: 45  ETVPITVIKRNGNREAFSRSKLLHGLSRACEKTG----LAPERLETIVDDL------ELI 94

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              ++   V   DI + V   L   G  ++   Y+    +YR+
Sbjct: 95  LQQRNGREVSSHDIGELVLEQL--KGLSEVA--YIRFASVYRQ 133


>gi|289192803|ref|YP_003458744.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           sp. FS406-22]
 gi|288939253|gb|ADC70008.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           sp. FS406-22]
          Length = 937

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 34/163 (20%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L ++  D     FN  +L   +    SG+       ++SE    +Y+G++  +L+    
Sbjct: 13  ELYVIKRDKRKEKFNVNKLAKSLIN--SGVNYGDLDQIISEVCTKVYNGITTDELKD--- 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                               ++  + +++   V +  +K    +++    E+     E+ 
Sbjct: 68  --------------------VVYNILKKIDKDVAENYRKGIILKVRTSEKEFEPFDKEKI 107

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           VKA +            +A++++ E         L+ L  +Y 
Sbjct: 108 VKALIRETGADKETAQKIADEVERE---------LKKLKVKYL 141


>gi|182412002|ref|YP_001817068.1| ATP-cone domain-containing protein [Opitutus terrae PB90-1]
 gi|226733011|sp|B1ZN99|NRDR_OPITP RecName: Full=Transcriptional repressor NrdR
 gi|177839216|gb|ACB73468.1| ATP-cone domain protein [Opitutus terrae PB90-1]
          Length = 152

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+ VIKR+G    F   K+  A+  A          R + V+ I   L E  +  L  H 
Sbjct: 48  GIVVIKRDGRREEFSRDKLLHAVRAAC-------HKRPVDVEQI-TMLIEDVIDMLEAHY 99

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
            S +      I D V   L         R   +Y+E R 
Sbjct: 100 DSEIPSA--AIGDAVMQRLRSMDQVAYVRFASVYKEFRD 136


>gi|148270137|ref|YP_001244597.1| transcriptional regulator NrdR [Thermotoga petrophila RKU-1]
 gi|281412521|ref|YP_003346600.1| ATP-cone domain protein [Thermotoga naphthophila RKU-10]
 gi|189030872|sp|A5ILE8|NRDR_THEP1 RecName: Full=Transcriptional repressor NrdR
 gi|147735681|gb|ABQ47021.1| ATP-cone domain protein [Thermotoga petrophila RKU-1]
 gi|281373624|gb|ADA67186.1| ATP-cone domain protein [Thermotoga naphthophila RKU-10]
          Length = 156

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   V V+K++G    FD  KI   ++KA               + +     E+ V R+ 
Sbjct: 45  EEAPVLVVKKDGRREKFDREKIKNGMIKAC------------EKRPVTYEQIEEAVNRIC 92

Query: 85  QHNKSALIVHIE--DIQDQVECSLMQSGHHKITREYVLYREERS 126
              +      +E   I + V   L +       R   +YR+ R 
Sbjct: 93  LKLREEGSFEVETKRIGELVMEELKKLDQVAYVRFASVYRDFRE 136


>gi|88608794|ref|YP_506241.1| transcriptional regulator NrdR [Neorickettsia sennetsu str.
           Miyayama]
 gi|119372208|sp|Q2GE55|NRDR_NEOSM RecName: Full=Transcriptional repressor NrdR
 gi|88600963|gb|ABD46431.1| ATP cone domain protein [Neorickettsia sennetsu str. Miyayama]
          Length = 149

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++K ++VIK+NG   SFD  K       A  +VE     R +  ++ +  L    + ++ 
Sbjct: 45  QLKEIKVIKKNGSCESFDREK-------AMRSVEVALRKRPV-TRERVDELMNSVIYKIE 96

Query: 85  QHNKSALIVHI 95
           + + + +   +
Sbjct: 97  RIHDAKITAKV 107


>gi|150021254|ref|YP_001306608.1| transcriptional regulator NrdR [Thermosipho melanesiensis BI429]
 gi|189030871|sp|A6LMS2|NRDR_THEM4 RecName: Full=Transcriptional repressor NrdR
 gi|149793775|gb|ABR31223.1| ATP-cone domain protein [Thermosipho melanesiensis BI429]
          Length = 151

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
          V+K++G    FD +KI   +MKA              V D++ ++
Sbjct: 51 VVKKDGKREKFDRAKILNGVMKACEKTNVTLEEIEKLVDDVVNDV 95


>gi|87124898|ref|ZP_01080745.1| hypothetical protein RS9917_02813 [Synechococcus sp. RS9917]
 gi|86167218|gb|EAQ68478.1| hypothetical protein RS9917_02813 [Synechococcus sp. RS9917]
          Length = 145

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG   SF  SK+   + +A           + R++ I+ +L       L 
Sbjct: 33  ETMPITVLKRNGSRESFSRSKLLHGLSRACEKTG----LTASRLETIVDDL------ELA 82

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              ++   V  ++I + V   L +       R   +YR+ R      ++    +    P 
Sbjct: 83  LQQRNGREVSSQEIGEMVLNQLKELSEVAYVRFASVYRQFRGVNDFVKTLEGMNDSATPL 142

Query: 145 LKI 147
             +
Sbjct: 143 AAV 145


>gi|320161748|ref|YP_004174973.1| transcriptional repressor NrdR [Anaerolinea thermophila UNI-1]
 gi|319995602|dbj|BAJ64373.1| transcriptional repressor NrdR [Anaerolinea thermophila UNI-1]
          Length = 157

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 30/110 (27%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDI 71
           P LA P         +IK++G    FD  K    I  A  K                   
Sbjct: 43  PLLATPL--------IIKKDGTREEFDREKLLRGIRIACAK------------RPVPASA 82

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           I+ L  +  T L +  K+ +   +  I D V   L    H      Y+ Y
Sbjct: 83  IERLVGEIETTLQRMGKAEVNSRV--IGDMVIEGLRGLDHI----AYIRY 126


>gi|300858648|ref|YP_003783631.1| NrdR family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686102|gb|ADK29024.1| NrdR-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206355|gb|ADL10697.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           C231]
 gi|302330911|gb|ADL21105.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           1002]
 gi|308276597|gb|ADO26496.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           I19]
          Length = 151

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG    F   K+   + +A    +G+  S     +D +K L +Q   R+ 
Sbjct: 42  EKAQLLVVKRNGLTEPFSRDKVIVGVRRA---CQGRDVS-----EDALKRLAQQVEERIR 93

Query: 85  QHNKSALIVHIEDI 98
           +H  S   +H  DI
Sbjct: 94  KHGSSQ--IHANDI 105


>gi|50955136|ref|YP_062424.1| transcriptional regulator NrdR [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|59799104|sp|Q6AE77|NRDR_LEIXX RecName: Full=Transcriptional repressor NrdR
 gi|50951618|gb|AAT89319.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 157

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM---AVEGKGASRSIRVQDIIKN 74
            +   + VIKR+G V  F   KI   + KA       +   A  + +V++ I++
Sbjct: 40 TTETASLSVIKRSGVVEPFSREKIVLGVRKACQGRPVTDSDLAVLAQKVEETIRS 94


>gi|254796730|ref|YP_003081566.1| transcriptional regulator NrdR [Neorickettsia risticii str.
           Illinois]
 gi|254589978|gb|ACT69340.1| transcriptional regulator NrdR [Neorickettsia risticii str.
           Illinois]
          Length = 149

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++K ++VIK+NG   SFD  K       A  +VE     R +  ++ +  L    + ++ 
Sbjct: 45  QLKEIKVIKKNGSCESFDREK-------AMRSVEIALRKRPV-TRERVDELMNCVIYKIE 96

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS-GHHKITREYVLYREERSDVR 129
           + + + +   +  E I    E +++      +    Y+ +  E+  ++
Sbjct: 97  RIHDAKITAKVIGELI--MEELAILDKVAFIRFASVYMNFENEKDFIQ 142


>gi|149178670|ref|ZP_01857255.1| hypothetical protein PM8797T_08339 [Planctomyces maris DSM 8797]
 gi|148842518|gb|EDL56896.1| hypothetical protein PM8797T_08339 [Planctomyces maris DSM 8797]
          Length = 151

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +   ++VIK++G    FD  K    I  A  K              +++ I+  +  +  
Sbjct: 44  EESPLKVIKKDGARVPFDRMKMVTGIETACYK--------RPVSPDQIESIVAQIEAEIY 95

Query: 81  TRLLQHNKS 89
               +   S
Sbjct: 96  ENFDREVPS 104


>gi|327310681|ref|YP_004337578.1| ATP-cone domain-containing protein [Thermoproteus uzoniensis
          768-20]
 gi|326947160|gb|AEA12266.1| ATP-cone domain protein [Thermoproteus uzoniensis 768-20]
          Length = 92

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMK--AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          V+VIKR+G    F P KI  +++K  A + V  + A +        + +T + + +++
Sbjct: 2  VKVIKRDGREEEFVPEKIVVSVLKTGAPLDVARRIARKVECAVSDSETITAKDIAKII 59


>gi|206900951|ref|YP_002251403.1| ATP cone domain protein [Dictyoglomus thermophilum H-6-12]
 gi|226732979|sp|B5YAD3|NRDR_DICT6 RecName: Full=Transcriptional repressor NrdR
 gi|206740054|gb|ACI19112.1| ATP cone domain protein [Dictyoglomus thermophilum H-6-12]
          Length = 150

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K + VIK++G    FD +K+   + +A +            + +II N+ +Q ++ + 
Sbjct: 45  EEKPIMVIKKDGRREPFDRNKLLAGLQRAVVKRNIDNEKLEAIIDEIIANIRKQGISEIT 104

Query: 85  QHNKSALIVHIEDIQDQ 101
                 +++  E ++D 
Sbjct: 105 SKEIGKMVL--EKLKDL 119


>gi|146319384|ref|YP_001199096.1| NrdR family transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146321589|ref|YP_001201300.1| transcriptional regulator NrdR [Streptococcus suis 98HAH33]
 gi|223933734|ref|ZP_03625708.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|253752409|ref|YP_003025550.1| ATP-binding protein [Streptococcus suis SC84]
 gi|253754235|ref|YP_003027376.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|253756169|ref|YP_003029309.1| ATP-binding protein [Streptococcus suis BM407]
 gi|330833350|ref|YP_004402175.1| transcriptional regulator NrdR [Streptococcus suis ST3]
 gi|189030866|sp|A4W3G1|NRDR_STRS2 RecName: Full=Transcriptional repressor NrdR
 gi|189030868|sp|A4VX57|NRDR_STRSY RecName: Full=Transcriptional repressor NrdR
 gi|145690190|gb|ABP90696.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Streptococcus suis 05ZYH33]
 gi|145692395|gb|ABP92900.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Streptococcus suis 98HAH33]
 gi|223897615|gb|EEF64002.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|251816698|emb|CAZ52340.1| ATP-binding protein [Streptococcus suis SC84]
 gi|251818633|emb|CAZ56468.1| ATP-binding protein [Streptococcus suis BM407]
 gi|251820481|emb|CAR47221.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|319758815|gb|ADV70757.1| transcriptional regulator NrdR [Streptococcus suis JS14]
 gi|329307573|gb|AEB81989.1| transcriptional regulator NrdR [Streptococcus suis ST3]
          Length = 163

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + K + V+K++G    F   KI   I++            S + + +  +  ++ V R+ 
Sbjct: 45  EEKTLVVVKKDGTREQFSREKIFNGIIR------------SAQKRPVSTDDIDEVVNRIE 92

Query: 85  QHNKSALIVHIED--IQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           Q  ++     IE   I + V   L++          + Y    S  R+ +   + +  + 
Sbjct: 93  QKVRAQGDSEIESDVIGNLVMEELVELDE-------ITYVRFASVYRSFKDVGELENLLK 145

Query: 143 PKL 145
             +
Sbjct: 146 QMI 148


>gi|85858029|ref|YP_460231.1| transcriptional regulator NrdR [Syntrophus aciditrophicus SB]
 gi|119372238|sp|Q2LQM8|NRDR_SYNAS RecName: Full=Transcriptional repressor NrdR
 gi|85721120|gb|ABC76063.1| regulatory protein [Syntrophus aciditrophicus SB]
          Length = 159

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53
          V+K++G    FD +KI   I KA
Sbjct: 51 VVKKDGRREPFDRNKIRMGIRKA 73



 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 102 VECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR 161
           VE  +M S   +++R+    R  R  +   +  +  +        ++  DG    F+  +
Sbjct: 9   VENKVMDS---RVSRDGNAIRRRRECLACGRRFTTYEYIEEMLPTVVKKDGRREPFDRNK 65

Query: 162 LEMIVEEACSGLQDVSSKIVLSET--YKNMYDGLSESDLETALI 203
           + M + +AC   + +S++ + S     +      S  ++ +++I
Sbjct: 66  IRMGIRKACEK-RPISTETIESLVTEVERFCQDYSGEEIRSSMI 108


>gi|325971059|ref|YP_004247250.1| transcriptional repressor nrdR [Spirochaeta sp. Buddy]
 gi|324026297|gb|ADY13056.1| Transcriptional repressor nrdR [Spirochaeta sp. Buddy]
          Length = 154

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K + VIKR+G    FD +K+ R I     +   K      ++  +++++ +  + ++   
Sbjct: 47  KPLMVIKRDGRREPFDLNKLGRGIR----SCTEKLKISENQIDTLLQSIEDAIMLKVGSK 102

Query: 87  NK 88
            +
Sbjct: 103 RE 104


>gi|305664177|ref|YP_003860465.1| ATP-cone domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378746|gb|ADM28585.1| ATP-cone domain protein [Ignisphaera aggregans DSM 17230]
          Length = 96

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK-NLTEQTVTRLLQH 86
           + VIKR+G    F P KI  + +KA     G     + ++  I++  L EQ V  +   
Sbjct: 2  SIVVIKRDGSKEEFIPEKIVVSCLKA-----GAPVDVARKIAKIVEAKLLEQNVKEVSAR 56


>gi|238855717|ref|ZP_04646013.1| transcriptional regulator NrdR [Lactobacillus jensenii 269-3]
 gi|260665503|ref|ZP_05866350.1| transcriptional regulator NrdR [Lactobacillus jensenii SJ-7A-US]
 gi|282934760|ref|ZP_06340000.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
 gi|313471814|ref|ZP_07812306.1| transcriptional regulator NrdR [Lactobacillus jensenii 1153]
 gi|238831663|gb|EEQ24004.1| transcriptional regulator NrdR [Lactobacillus jensenii 269-3]
 gi|239528577|gb|EEQ67578.1| transcriptional regulator NrdR [Lactobacillus jensenii 1153]
 gi|260560771|gb|EEX26748.1| transcriptional regulator NrdR [Lactobacillus jensenii SJ-7A-US]
 gi|281301171|gb|EFA93475.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
          Length = 155

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 18/97 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK +G    FD  KI R +  A      K    S ++ +++ ++  +         +  
Sbjct: 51  VIKNDGTREPFDREKILRGVAAAAQ----KRPVTSEQLDELVDHVENEI------RKQGV 100

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +  ++I   V   L+      +   Y+    +YR+
Sbjct: 101 SEISSKEIGKLVMNELV--NVDDVA--YIRFASIYRQ 133


>gi|164423819|ref|XP_962284.2| hypothetical protein NCU07698 [Neurospora crassa OR74A]
 gi|157070245|gb|EAA33048.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1047

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
               RNS     A    +AN  G +  IDP  +N  ++ +  G   V    L    K  D
Sbjct: 171 RHASRNSFQSTSAAGG-LANSLGPT--IDPRKKNALIRESEYGVMGVKAPLLDVSAKAED 227

Query: 815 LWDEAM-----ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            W  A+        LK    S+   +   +    +  +    D   L+E  +R +++ D+
Sbjct: 228 FWGPALGGREKEEHLKTVGSSLDTYKDYVEISAALAESIKRKDHESLVEEYNRARRFADE 287

Query: 870 AQSL--NLYLDEPSGKKLDFIYRQA 892
           A+ +  N+   EP+  +L  I   A
Sbjct: 288 AKQIAQNIGSGEPTEAQLYKILLAA 312


>gi|187933974|ref|YP_001887392.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
 gi|187722127|gb|ACD23348.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 89

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IK++G +  F  SK+ ++I+ A   V    +   +        L E+ V  +L    
Sbjct: 1   MNIIKKSGRIEEFQISKVRQSILSASEEVTEPLSDAEL-------KLVEKEVNNILTKLN 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREY 118
                   ++       L + G   + + Y
Sbjct: 54  RTETSS-YEVFAICLNVLNELGFKAVCKSY 82


>gi|318042630|ref|ZP_07974586.1| transcriptional regulator NrdR [Synechococcus sp. CB0101]
          Length = 164

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG   +F+ +K+   +++A             R++ ++  L  Q   R  
Sbjct: 45  ETVPITVVKRNGSREAFNRNKLLHGLLRACEKTG----LEPSRLETVVDELELQLQGRSG 100

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGH-HKITREYV----LYREERS 126
           +   S          D  E  L+Q      +   YV    +YR+ +S
Sbjct: 101 REVSSG---------DIGELVLVQLAEMSDVA--YVRFASVYRQFQS 136


>gi|311696441|gb|ADP99314.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 343

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 48  RAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107
            A+ KA  AV+ K A  +  V  ++ +LT+Q V    +  +    V + + QD       
Sbjct: 218 VALEKAVNAVDSKNAQSAGTVSRVVLSLTKQAVLEYDEALEEGRFVAVHEYQD------- 270

Query: 108 QSGHHKITREYV------LYREERSDVRAAQSHSKSDAPIAPK 144
             G     R+Y+      L ++ R   R A           P 
Sbjct: 271 GRGFVSSARDYLDSHQATLKKQNREAWRDAVKALDELQKAWPS 313


>gi|297571237|ref|YP_003697011.1| ATP-cone domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931584|gb|ADH92392.1| ATP-cone domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 167

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
             +   + V+KR+G    F   KI+  + KA           ++  Q + +++  Q + +
Sbjct: 49  TSESATLMVVKRSGTSEPFSREKIAAGVGKACQGRPVTDDQLAVLAQKVEESIRAQGIAQ 108

Query: 83  LLQHN 87
           +  H+
Sbjct: 109 IDAHD 113


>gi|83311439|ref|YP_421703.1| transcriptional regulator NrdR [Magnetospirillum magneticum AMB-1]
 gi|114152100|sp|Q2W4T1|NRDR3_MAGMM RecName: Full=Transcriptional repressor nrdR 3
 gi|82946280|dbj|BAE51144.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 153

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 23/139 (16%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D        + P     F      +I+ + VIK++GG + FD  K    ++K+   
Sbjct: 17  RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGGRSPFDRDK----VLKSLR- 71

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED--IQDQVECSLMQSGHHKI 114
                   ++R + +     E+ V  + +  +S     +    I + V   LM     K+
Sbjct: 72  -------IALRKRPVDDEQIERIVNGIHRRLESMGENEVPSKFIGELVMEVLMDLD--KV 122

Query: 115 TREYVLYREERSDVRAAQS 133
              YV Y     + R A+ 
Sbjct: 123 A--YVRYASVYRNFREAKD 139


>gi|327405169|ref|YP_004346007.1| ATP-cone domain-containing protein [Fluviicola taffensis DSM 16823]
 gi|327320677|gb|AEA45169.1| ATP-cone domain protein [Fluviicola taffensis DSM 16823]
          Length = 284

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   L +    G    F+ ++++  +  + +    +    +L E  KNMY+G++  ++  
Sbjct: 1   MHHPLTVTKASGEQSPFSEEKIKKSLRRSGADEDQID--FILQEIKKNMYNGMTTRNIYK 58

Query: 201 AL 202
             
Sbjct: 59  TA 60


>gi|170290431|ref|YP_001737247.1| ATP-cone domain-containing protein [Candidatus Korarchaeum
          cryptofilum OPF8]
 gi|170174511|gb|ACB07564.1| ATP-cone domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 91

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          VIKR+GG   F P KI  + +KA   ++       I   D++K+   +  T+ L
Sbjct: 5  VIKRDGGREEFSPEKIVVSCLKAGAPLDVARKIARIIECDLLKSGINEVTTKDL 58


>gi|311111350|ref|ZP_07712747.1| LOW QUALITY PROTEIN: anaerobic ribonucleoside-triphosphate
           reductase [Lactobacillus gasseri MV-22]
 gi|311066504|gb|EFQ46844.1| LOW QUALITY PROTEIN: anaerobic ribonucleoside-triphosphate
           reductase [Lactobacillus gasseri MV-22]
          Length = 740

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                   +     +       +  +L+      
Sbjct: 21  IKRDGSIYPFALYKIEM-----------------VLDNLHLTKHEADILPSILKKLNGVK 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               +DI D    +L + G       YV YR      R  +++ +       +L +++  
Sbjct: 64  QTSTKDIADAFVQTLTELGFDDEANAYVDYR------REDEANFEKQTETTNRLDRLVHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|159905115|ref|YP_001548777.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C6]
 gi|159886608|gb|ABX01545.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C6]
          Length = 791

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++   G   +FN  +L   +  +    +++ +  +LSE Y  +Y+G+S  DL+T L 
Sbjct: 32  KINVVKRSGNEETFNVNKLVKSLLNSGVDYENIDA--ILSEIYGKVYNGMSTDDLKTILY 89

Query: 204 FSSRT 208
            + + 
Sbjct: 90  KTLKE 94


>gi|116628816|ref|YP_813988.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           gasseri ATCC 33323]
 gi|116094398|gb|ABJ59550.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           gasseri ATCC 33323]
          Length = 738

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                   +     +       +  +L+      
Sbjct: 23  IKRDGSIYPFALYKIEM-----------------VLDNLHLTKHEADILPSILKKLNGVK 65

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               +DI D    +L + G       YV YR      R  +++ +       +L +++  
Sbjct: 66  QTSTKDIADAFVQTLTELGFDDEANAYVDYR------REDEANFEKQTETTNRLDRLVHH 119

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 120 DPTIVNENANKDSRVFS 136


>gi|145592458|ref|YP_001154460.1| hypothetical protein Pars_2264 [Pyrobaculum arsenaticum DSM
          13514]
 gi|145284226|gb|ABP51808.1| conserved hypothetical protein [Pyrobaculum arsenaticum DSM
          13514]
          Length = 91

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53
          V+V+KR+G +  F P KI  +++KA
Sbjct: 2  VKVVKRDGRMEEFIPEKIVVSVLKA 26


>gi|33863934|ref|NP_895494.1| transcriptional regulator NrdR [Prochlorococcus marinus str. MIT
           9313]
 gi|59799141|sp|Q7V5A5|NRDR_PROMM RecName: Full=Transcriptional repressor NrdR
 gi|33635518|emb|CAE21842.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 158

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG   +F+ SKI   +  A      +      R++ ++  L  Q   R  
Sbjct: 45  ETVPITVLKRNGNRETFNRSKILNGLTLACQKTGLEQD----RLESMVNELELQLQQR-- 98

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               S   V+  +I + V   L +       R   +YR+ R
Sbjct: 99  ----SGREVNSAEIGEMVLDQLSEMSEVAYVRFASVYRDFR 135


>gi|24374976|ref|NP_719019.1| transcriptional regulator NrdR [Shewanella oneidensis MR-1]
 gi|113969439|ref|YP_733232.1| transcriptional regulator NrdR [Shewanella sp. MR-4]
 gi|114046667|ref|YP_737217.1| transcriptional regulator NrdR [Shewanella sp. MR-7]
 gi|117919544|ref|YP_868736.1| transcriptional regulator NrdR [Shewanella sp. ANA-3]
 gi|38258781|sp|Q8EBN9|NRDR_SHEON RecName: Full=Transcriptional repressor NrdR
 gi|119372227|sp|Q0HL92|NRDR_SHESM RecName: Full=Transcriptional repressor NrdR
 gi|119372228|sp|Q0HXJ5|NRDR_SHESR RecName: Full=Transcriptional repressor NrdR
 gi|189030853|sp|A0KU61|NRDR_SHESA RecName: Full=Transcriptional repressor NrdR
 gi|24349702|gb|AAN56463.1|AE015783_6 conserved hypothetical protein TIGR00244 [Shewanella oneidensis
           MR-1]
 gi|113884123|gb|ABI38175.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. MR-4]
 gi|113888109|gb|ABI42160.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. MR-7]
 gi|117611876|gb|ABK47330.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. ANA-3]
          Length = 149

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  K+   +++A   VE     R + + +I + L++  +   L+    
Sbjct: 50  RVIKRDGTRQPFDEEKLQAGMLRA---VEK----RPVSMDEIEQALSK--IKSTLRATGE 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +   E I + +   LM     K+   Y+    +YR 
Sbjct: 101 REVPS-EMIGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|322368527|ref|ZP_08043095.1| transcriptional regulator NrdR [Haladaptatus paucihalophilus DX253]
 gi|320551811|gb|EFW93457.1| transcriptional regulator NrdR [Haladaptatus paucihalophilus DX253]
          Length = 165

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QV KR+G + SF   K+   I +A   VE +  S +      +  L E   + L   N
Sbjct: 47  SLQVKKRDGNIESFSREKLRAGIERA---VEKRHVSEAD-----VTALVEAVESEL--GN 96

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           +   IV    + D V   L +    ++   Y+ +
Sbjct: 97  RETRIVSSSLVGDLVSERLRELD--QVA--YIRF 126


>gi|269956060|ref|YP_003325849.1| ATP-cone domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304741|gb|ACZ30291.1| ATP-cone domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 161

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +   + V+KR+G    F   KI   + KA           +I  Q + + L +Q    +
Sbjct: 42  ETASLAVVKRSGATEPFSRDKIVTGVRKACQGRPVSEDDLAILAQKVEETLRQQGSAEI 100


>gi|323356537|ref|YP_004222933.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323272908|dbj|BAJ73053.1| predicted transcriptional regulator, consists of a Zn-ribbon and
          ATP-cone domains [Microbacterium testaceum StLB037]
          Length = 163

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFM---AVEGKGASRSIRVQDIIKN 74
          +   + VIKR+G V  F   K+   + KA       +   A  + +V++ I+ 
Sbjct: 42 ETASLNVIKRSGVVEPFSREKVMSGVRKACQGRPVTDADLAMLAQQVEEAIRQ 94


>gi|282852476|ref|ZP_06261818.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           gasseri 224-1]
 gi|282556218|gb|EFB61838.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           gasseri 224-1]
          Length = 736

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI                   +     +       +  +L+      
Sbjct: 21  IKRDGSIYPFALYKIEM-----------------VLDNLHLTKHEADILPSILKKLNGVK 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               +DI D    +L + G       YV YR      R  +++ +       +L +++  
Sbjct: 64  QTSTKDIADAFVQTLTELGFDDEANAYVDYR------REDEANFEKQTETTNRLDRLVHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|297587972|ref|ZP_06946616.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574661|gb|EFH93381.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 127

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI       F ++     S   ++     N+  + V + ++  K  
Sbjct: 45  VLKKLGNVESFDKEKI-------FHSIAQTSDSAGAKMNSSDVNIIVEDVLKKMKSIKRN 97

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
           +    ++I+  VE +L + G+ K+  EY
Sbjct: 98  VYPT-KEIRGYVEEALEEEGYKKVLEEY 124


>gi|154482873|ref|ZP_02025321.1| hypothetical protein EUBVEN_00569 [Eubacterium ventriosum ATCC
           27560]
 gi|149736301|gb|EDM52187.1| hypothetical protein EUBVEN_00569 [Eubacterium ventriosum ATCC
           27560]
          Length = 346

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNL---TEQTVTRLLQHNKSALIVHIEDIQDQVECSL 106
           I KA ++ +  G S  +   D+   +    EQ     +++    L V I+D+QD +   L
Sbjct: 139 IYKAVISNDKSGMSSVVITNDVASQMGMNEEQLYEVAMKNTPELLPVSIQDMQDVISEML 198

Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD---DGTLISFNSKRLE 163
            +            Y EER ++    S    D        +      +G       + L+
Sbjct: 199 FEEIAGDE------YEEERKEIDDTISEVVEDNSQTKMYVMTNRRKINGAAEILFPENLD 252

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +     S +  + S     E      +G S  +L+  +I
Sbjct: 253 KLASILHSDIYIIPSS--THEVIAISSNGHSADELQEMVI 290


>gi|326530242|dbj|BAJ97547.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 141

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            R + K  + I A  LW  +L    ETG P++ +
Sbjct: 94  MRKQAKQKKVIPAQTLWFDILKSQIETGTPYMLY 127


>gi|326528589|dbj|BAJ93476.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 143

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            R + K  + I A  LW  +L    ETG P++ +
Sbjct: 96  MRKQAKQKKVIPAQTLWFDILKSQIETGTPYMLY 129


>gi|124802921|ref|XP_001347635.1| probable protein [Plasmodium falciparum 3D7]
 gi|23495218|gb|AAN35548.1| probable protein [Plasmodium falciparum 3D7]
          Length = 566

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 11/208 (5%)

Query: 56  AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVH-IEDIQDQVECSLMQSGHHKI 114
           A E          +++ + + E+    L++     +    IE + ++V   L++    ++
Sbjct: 171 AEELVEKVDEKVAEEVDQKVDEEVTEELIEKVDEEVTEELIEKVDEEVAEELIEKVDEEV 230

Query: 115 TREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
             E +       +  A +   K D  +A +L   + D  +     + +E + EE    L 
Sbjct: 231 AEELI-------EKVADELIEKVDEEVAEELIEKVADELVEKVAEELVEKVDEEVAEELV 283

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           +   + V  E  + + + ++E  +E      +  LIEK     +  A  L+EK+  EV  
Sbjct: 284 EKVDEKVAEEVDQKVDEEVTEELIEKVDEEVTEELIEKV---DEEVAEELIEKVDEEVAE 340

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            + +K       ++     E     + E
Sbjct: 341 ELIEKVADELVEKVAEELVEKVDEQVAE 368


>gi|22299404|ref|NP_682651.1| transcriptional regulator NrdR [Thermosynechococcus elongatus BP-1]
 gi|38258778|sp|Q8DHT4|NRDR_THEEB RecName: Full=Transcriptional repressor NrdR
 gi|22295587|dbj|BAC09413.1| tlr1861 [Thermosynechococcus elongatus BP-1]
          Length = 162

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKRNG   SFD SK+ R IM A              V DI  +L  ++   +    
Sbjct: 48  PITVIKRNGDRESFDRSKLLRGIMTACGKTNIPQQKIEALVDDIEADLQLRSRREVTSAE 107

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYREERS-DVRAAQSHSKSDAPIA 142
                          E +L +  H      YV    +YR+ +      A+     + P +
Sbjct: 108 LG-------------EAALQRLRHLSEV-AYVRFASVYRQFQGISDFVAELAHLQETPAS 153

Query: 143 PKL 145
           P+L
Sbjct: 154 PEL 156


>gi|119774152|ref|YP_926892.1| transcriptional regulator NrdR [Shewanella amazonensis SB2B]
 gi|189030694|sp|A1S4B6|NRDR_SHEAM RecName: Full=Transcriptional repressor NrdR
 gi|119766652|gb|ABL99222.1| ATP-cone domain protein [Shewanella amazonensis SB2B]
          Length = 149

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 30 QVIKRNGGVTSFDPSKISRAIMKA 53
          +VIKR+G    FD  K+   ++KA
Sbjct: 50 RVIKRDGTRQPFDEEKLRSGMLKA 73


>gi|134046497|ref|YP_001097982.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C5]
 gi|132664122|gb|ABO35768.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C5]
          Length = 791

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++   G    FN  +L   +  +    +++ +  +LSE Y  +Y+G+S  DL+T L 
Sbjct: 32  KINVVKRSGNEELFNVNKLVKSLLNSGVDYENIDA--ILSEIYSKVYNGMSTDDLKTILY 89

Query: 204 FSSRT 208
            + + 
Sbjct: 90  KTLKE 94


>gi|312137287|ref|YP_004004624.1| anaerobic ribonucleoside-triphosphate reductase [Methanothermus
           fervidus DSM 2088]
 gi|311225006|gb|ADP77862.1| anaerobic ribonucleoside-triphosphate reductase [Methanothermus
           fervidus DSM 2088]
          Length = 764

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            Q   K   P    + I    G    F   ++   +      L    +K + S+   N Y
Sbjct: 1   MQKDVKMYVPSKAGITIKKSSGIKEKFRPGKIIRSLLNIGVSLSM--AKKIASKVASNAY 58

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTA-RFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           DG++ S++   L+++    I+++     + A    +   R ++     KK ++A   E  
Sbjct: 59  DGMTTSEI-KMLVYNELQKIDEKAADEYLAANELKVRTSRDKIEKFDKKKIERALIVETG 117

Query: 250 CLYPEYFCRYIEEGVKARLLHE 271
                   ++I + + + +  E
Sbjct: 118 A------PKHIAKKIASEIWKE 133


>gi|291543400|emb|CBL16509.1| transcriptional regulator NrdR [Ruminococcus sp. 18P13]
          Length = 147

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 18/80 (22%)

Query: 31  VIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           V+KR+G    FD  K    I  A+ K  ++V            D +  L ++        
Sbjct: 49  VVKRDGSFEPFDRQKLIAGIYSAVKKRPVSV------------DAVSRLVDEIENYYANE 96

Query: 87  NKSALIVHIEDIQDQVECSL 106
            K+ +     +I D V   L
Sbjct: 97  MKTQVTSA--EIGDMVLERL 114


>gi|229547953|ref|ZP_04436678.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257091429|ref|ZP_05585790.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312905499|ref|ZP_07764613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|229306974|gb|EEN72970.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257000241|gb|EEU86761.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310631228|gb|EFQ14511.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|315161270|gb|EFU05287.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315579580|gb|EFU91771.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
          Length = 242

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 40  SFDPSKISRAIMKA----FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
            F+  KI++ I K       AV    A +  + + I     ++     L   +   +V +
Sbjct: 102 PFEEEKITQVIEKVSKEMAQAVPENTAEKGPKSEAIPIQGEDRI---YLVAPEDIYLVSV 158

Query: 96  EDIQ----------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           E+ Q                + +E  L  +   K  R ++L    R+ ++  Q       
Sbjct: 159 EERQLSIFVDQQVYKMTGTLNSIEQKLPATLFIKTHRSFIL---NRTKIQEIQPWFN--- 212

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                L++++ +G+ +  +   ++   E+ 
Sbjct: 213 ---NTLQVILTNGSKVPVSRSYVKEFKEKL 239


>gi|197105137|ref|YP_002130514.1| predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Phenylobacterium zucineum HLK1]
 gi|226733012|sp|B4RB34|NRDR_PHEZH RecName: Full=Transcriptional repressor NrdR
 gi|196478557|gb|ACG78085.1| predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Phenylobacterium zucineum HLK1]
          Length = 155

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + ++KR+G  T FD  K    IS A+ K              R++ +I  +  Q  
Sbjct: 45  QLREITILKRSGRRTPFDRDKLARSISIALRK--------RPVEPERIERMISTIVRQLE 96

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +       S+       I + V   L Q     +   YV Y     D R  Q 
Sbjct: 97  SMGETELPSST------IGELVMKQLKQLD--DVA--YVRYASVYRDFRETQD 139


>gi|160897200|ref|YP_001562782.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362784|gb|ABX34397.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 711

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 38/220 (17%)

Query: 1   MHPSKDVNKGD---EDAFPSLAYPFPEKIKGVQVIKR-------NGGVTSFDPSKISRAI 50
           + P++ V + D   E A P ++      I+ +  ++R       +G V            
Sbjct: 215 LRPTQPVPQDDDESESASPGVSGEIERAIRNMAGLRRRRAERKQDGTVVPASDE------ 268

Query: 51  MKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSG 110
            +A  A      + ++ +   ++    +   R + H+  +    +E +QD  E   + +G
Sbjct: 269 ARALAATLTDSKALAVEILSRME--LHRRAERDMWHSADSGTNPLEWLQDAFER--INNG 324

Query: 111 HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD--GTLISFNSKRLEMIVEE 168
            H           + +  R  +           ++ + + D  G       + LE   ++
Sbjct: 325 RH----------SDFTLPRRIELFVPQTILQESEVDLTLIDTRGIDELAERRDLEQHFDD 374

Query: 169 ------ACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
                  CS   +  +  V     +    G+   +   A+
Sbjct: 375 PHTVVVLCSRFDETPALPVRQLLTRAREAGVRTLESHAAI 414


>gi|124023908|ref|YP_001018215.1| NrdR family transcriptional regulator [Prochlorococcus marinus str.
           MIT 9303]
 gi|189029295|sp|A2CBU0|NRDR_PROM3 RecName: Full=Transcriptional repressor NrdR
 gi|123964194|gb|ABM78950.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Prochlorococcus marinus str. MIT 9303]
          Length = 158

 Score = 39.7 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG   +F+ SKI   +  A      +      R++ ++  L  Q   R  
Sbjct: 45  ETVPITVLKRNGNRETFNRSKILNGLTMACQKTGLEQD----RLESMVNELELQLQQR-- 98

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
               S   V+  +I + V   L +       R   +YR  R
Sbjct: 99  ----SGREVNSAEIGEMVLDQLSEMSEVAYVRFASVYRHFR 135


>gi|46201727|ref|ZP_00208226.1| COG1327: Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score = 39.7 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 23/139 (16%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D        + P     F      +I+ + VIK++GG + FD  K    ++K+   
Sbjct: 5   RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGGRSPFDRDK----VLKSLR- 59

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED--IQDQVECSLMQSGHHKI 114
                   ++R + +     E+ V  + +  +S     +    I + V   LM     K+
Sbjct: 60  -------IALRKRPVDDEQIERIVNGIHRRLESMGENEVPSKFIGELVMEVLMDLD--KV 110

Query: 115 TREYVLYREERSDVRAAQS 133
              YV Y     + R A+ 
Sbjct: 111 A--YVRYASVYRNFREAKD 127


>gi|327192675|gb|EGE59613.1| excinuclease ABC protein, B subunit [Rhizobium etli CNPAF512]
          Length = 1013

 Score = 39.7 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 100/359 (27%), Gaps = 52/359 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM----PQAFFMRVAMGLALKET 333
           L  L       RD  F               + G  IE+     +    R++M       
Sbjct: 336 LADLVAQQYKRRDMDFTRGSF---------RVRGDTIELFPAHLEDAAWRISMF------ 380

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQEN 390
             E  A+  ++ L+             + + +            ++ ++L      L++ 
Sbjct: 381 GDEIDAITEFDPLTGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKA 440

Query: 391 AMLA---KYSGGLGNDWTPVRGLGA------HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L    +       D   +   G+      +     G+  G  P           +   
Sbjct: 441 GRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDPPP-----TLFEYIPDN 495

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
                    +++  H+ V +   + +  GD RR+         +P     R  +   W  
Sbjct: 496 ------ALVFIDESHVTVPQIGGMYR--GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 547

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI---SAVALWRKMLTMLFETGH 558
             PD ++        E E +   +  Q  R    +   +   SA      +L  + ET  
Sbjct: 548 MRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQVDDVLGEIRETAA 607

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
               ++  C + + +    +    +          S+   +  L  I ++       FD
Sbjct: 608 KG--YRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSD---IDTLERIEIIRDLRLGAFD 661


>gi|296875843|ref|ZP_06899905.1| LuxR family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433214|gb|EFH18999.1| LuxR family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 986

 Score = 39.7 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 154 LISFNSKRLEMIVEE-------ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           + + + + +  IVEE        C  L  +    +LS   + ++       LE  L  S+
Sbjct: 535 IETLSERAIVSIVEEGEALMVQFCKQLVAMYFYHLLSPARRRLFHQQIAQKLEETLEDST 594

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             L+ KE  Y     +     LR       Y +      HE+  +Y +     + +G  +
Sbjct: 595 DLLLYKEIAYQY---KQSQNLLRSLSFELTYLEEILQLEHELFPIYSKVDEGVLSDGTNS 651

Query: 267 RLLHESMMDFDLVYLANDL-KYERDFAFEYLGLQILY--DRYFLH 308
            L     +      L N   +++RD  ++YL L+ LY   RYF+ 
Sbjct: 652 HLDIFGELSRIRQELDNLFSRHQRDREYKYLQLRYLYLEGRYFIR 696


>gi|328952289|ref|YP_004369623.1| Transcriptional repressor nrdR [Desulfobacca acetoxidans DSM 11109]
 gi|328452613|gb|AEB08442.1| Transcriptional repressor nrdR [Desulfobacca acetoxidans DSM 11109]
          Length = 159

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 31/84 (36%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G   +F+ SKI   I KA                                  +  
Sbjct: 51  VIKKDGRREAFNRSKIYEGIKKAC-------------------------------EKRPI 79

Query: 91  LIVHIEDIQDQVECSLMQSGHHKI 114
            I  IE   D +E  L +SG  ++
Sbjct: 80  SIDDIEQFLDGLERELQESGQKEV 103


>gi|118580020|ref|YP_901270.1| transcriptional regulator NrdR [Pelobacter propionicus DSM 2379]
 gi|189029250|sp|A1APE2|NRDR_PELPD RecName: Full=Transcriptional repressor NrdR
 gi|118502730|gb|ABK99212.1| ATP-cone domain protein [Pelobacter propionicus DSM 2379]
          Length = 150

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 24  EKIKGVQ--VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
           E+I+ +   V+K++G    F+ +KI   I KA          +     ++I+ L ++  T
Sbjct: 42  ERIEEMLPLVLKKDGRREPFERTKIISGIKKAC--------EKRPISVEVIERLVDRLET 93

Query: 82  RLLQHNKSA 90
           RL + ++  
Sbjct: 94  RLQESSEKE 102


>gi|223937248|ref|ZP_03629154.1| ATP-cone domain protein [bacterium Ellin514]
 gi|223894033|gb|EEF60488.1| ATP-cone domain protein [bacterium Ellin514]
          Length = 167

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           V+KR+G    F   K+   + KAF        +  + ++ I+  + E+    +
Sbjct: 66  VVKRDGRREEFSREKLLSGLKKAFQKRPVSPEAIEMLLEKIVNEINEKYEREV 118


>gi|18976450|ref|NP_577807.1| 2-phosphoglycerate kinase [Pyrococcus furiosus DSM 3638]
 gi|46577082|sp|Q8U4K7|PGK2_PYRFU RecName: Full=2-phosphoglycerate kinase; Short=2PGK
 gi|18891986|gb|AAL80202.1| 2-phosphoglycerate kinase [Pyrococcus furiosus DSM 3638]
          Length = 302

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 29  VQVIKRNGGV-TSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VI+R+G V   F    I   + ++  +V            D+   +  +    L++  
Sbjct: 2   IKVIERDGKVRLPFSRG-I---LTRSITSVGVDV--------DLAYAIATEVQEELIRQG 49

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
           K   +V  E+I++     L++ G  +  + Y+ +R  R
Sbjct: 50  KK--VVTKEEIRNITYQKLVEKGFKEEAKRYLFWRRFR 85


>gi|218247837|ref|YP_002373208.1| transcriptional regulator NrdR [Cyanothece sp. PCC 8801]
 gi|257060842|ref|YP_003138730.1| transcriptional regulator NrdR [Cyanothece sp. PCC 8802]
 gi|226732975|sp|B7JX64|NRDR_CYAP8 RecName: Full=Transcriptional repressor NrdR
 gi|218168315|gb|ACK67052.1| ATP-cone domain protein [Cyanothece sp. PCC 8801]
 gi|256591008|gb|ACV01895.1| ATP-cone domain protein [Cyanothece sp. PCC 8802]
          Length = 179

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 13/131 (9%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIK +G   SFDPSK+ R +++A              V DI   L ++T   +    
Sbjct: 48  PITVIKHDGKKESFDPSKLLRGMVRACEKTGISYQKLETIVDDIEAQLQQRTQREVTS-- 105

Query: 88  KSALIVHIEDIQDQVECSLMQSG---HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   ++I   V   L Q     + +    Y  ++  +  V   +   + D   +  
Sbjct: 106 --------QEIGQLVLKYLRQENEVAYIRFASVYGRFQGIKDFVDTLKQLQEEDLVPSET 157

Query: 145 LKIMMDDGTLI 155
           +    +D    
Sbjct: 158 IWKPANDDFSE 168


>gi|190892262|ref|YP_001978804.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
 gi|190697541|gb|ACE91626.1| excinuclease ABC protein, B subunit [Rhizobium etli CIAT 652]
          Length = 1013

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 100/359 (27%), Gaps = 52/359 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM----PQAFFMRVAMGLALKET 333
           L  L       RD  F               + G  IE+     +    R++M       
Sbjct: 336 LADLVAQQYKRRDMDFTRGSF---------RVRGDTIELFPAHLEDAAWRISMF------ 380

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQEN 390
             E  A+  ++ L+             + + +            ++ ++L      L++ 
Sbjct: 381 GDEIDAITEFDPLTGQKVGDLKSVKIYANSHYVTPRPTLNGAIKSIKEELRLRLAELEKA 440

Query: 391 AMLA---KYSGGLGNDWTPVRGLGA------HIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             L    +       D   +   G+      +     G+  G  P           +   
Sbjct: 441 GRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDPPP-----TLFEYIPDN 495

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
                    +++  H+ V +   + +  GD RR+         +P     R  +   W  
Sbjct: 496 ------ALVFIDESHVTVPQIGGMYR--GDFRRKATLAEYGFRLPSCMDNRPLRFEEWDA 547

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI---SAVALWRKMLTMLFETGH 558
             PD ++        E E +   +  Q  R    +   +   SA      +L  + ET  
Sbjct: 548 MRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRSARTQVDDVLGEIRETAA 607

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
               ++  C + + +    +    +          S+   +  L  I ++       FD
Sbjct: 608 KG--YRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSD---IDTLERIEIIRDLRLGAFD 661


>gi|197119396|ref|YP_002139823.1| transcriptional regulator NrdR [Geobacter bemidjiensis Bem]
 gi|253699855|ref|YP_003021044.1| NrdR family transcriptional regulator [Geobacter sp. M21]
 gi|226732994|sp|B5E858|NRDR_GEOBB RecName: Full=Transcriptional repressor NrdR
 gi|259512009|sp|C6E3M1|NRDR_GEOSM RecName: Full=Transcriptional repressor NrdR
 gi|197088756|gb|ACH40027.1| transcriptional repressor of ribonucleotide reductase, NrdR, zinc
           ribbon and ATP-cone domain-containing protein [Geobacter
           bemidjiensis Bem]
 gi|251774705|gb|ACT17286.1| ATP-cone domain protein [Geobacter sp. M21]
          Length = 150

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 37/87 (42%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    F+  K+   I KA                                     
Sbjct: 51  VTKRDGRREPFERMKLVNGIQKACE----------------------------------K 76

Query: 91  LIVHIEDIQDQV---ECSLMQSGHHKI 114
             V +E I+  V   E  L +SG  +I
Sbjct: 77  RPVSVETIEKMVDRLETRLQESGEREI 103


>gi|256850827|ref|ZP_05556216.1| transcriptional regulator NrdR [Lactobacillus jensenii 27-2-CHN]
 gi|260661038|ref|ZP_05861952.1| transcriptional regulator NrdR [Lactobacillus jensenii 115-3-CHN]
 gi|282934504|ref|ZP_06339759.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
 gi|297205700|ref|ZP_06923095.1| transcriptional regulator NrdR [Lactobacillus jensenii JV-V16]
 gi|256615889|gb|EEU21077.1| transcriptional regulator NrdR [Lactobacillus jensenii 27-2-CHN]
 gi|260547975|gb|EEX23951.1| transcriptional regulator NrdR [Lactobacillus jensenii 115-3-CHN]
 gi|281301451|gb|EFA93740.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
 gi|297148826|gb|EFH29124.1| transcriptional regulator NrdR [Lactobacillus jensenii JV-V16]
          Length = 155

 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 18/97 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK +G    FD  KI R +  A      K    S ++  ++ ++  +         +  
Sbjct: 51  VIKNDGTREPFDREKILRGVAAAAQ----KRPVTSEQLDKLVDHVENEI------RKQGV 100

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +  ++I + V   L+      +   Y+    +YR+
Sbjct: 101 SEISSKEIGELVMNELV--NVDDVA--YIRFASIYRQ 133


>gi|85710443|ref|ZP_01041507.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
 gi|85687621|gb|EAQ27626.1| excinuclease ABC subunit B [Erythrobacter sp. NAP1]
          Length = 731

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 35  NGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD--IIKNLTEQTVTRLLQHNKSALI 92
           +G V  +   +I+ ++ +A    + +   +    ++  I     ++ +  ++ H  S   
Sbjct: 578 DGRVILY-ADRITGSMERAMAETDRRREKQKAFNEEHGITPKTIKRDIADIVAHTASQDG 636

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDG 152
           V ++   D+V  +L+        R Y+   E+R    AA    +    +  +++ + +D 
Sbjct: 637 VTVDTGDDEV-NNLVGHN----LRSYIEDLEKRMRDAAANLEFEEAGRLRDEIRRLENDE 691

Query: 153 TLISFNSKR 161
             +  + K+
Sbjct: 692 LGLPDDQKK 700


>gi|313890330|ref|ZP_07823962.1| sensory transduction protein LytT [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121316|gb|EFR44423.1| sensory transduction protein LytT [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 243

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 32/151 (21%)

Query: 40  SFDPSKISRAIMKA--FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97
            F+ ++I +AI KA   + V+        +    I+ LT +T  R+     + +I    +
Sbjct: 102 PFEETRIKKAIEKAKSALEVQNTNYLTQAKTDKTIERLTIETDERIYLLPFTDIIYC--E 159

Query: 98  IQ-------------------DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           +Q                     +E +L      K+ R Y++ +EE  +++   +     
Sbjct: 160 VQGKETTIHTKKGSYTSHTSLSALEKNLTSDRFLKVHRAYIINQEEIKEIQPWFNQ---- 215

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
                  ++ M +   +  +   ++   ++ 
Sbjct: 216 -----TYQVTMSNRGKVPVSRSYIKSFKQQL 241


>gi|224370211|ref|YP_002604375.1| transcriptional regulator NrdR [Desulfobacterium autotrophicum
           HRM2]
 gi|259512004|sp|C0QKX1|NRDR_DESAH RecName: Full=Transcriptional repressor NrdR
 gi|223692928|gb|ACN16211.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 165

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
             Y   E +  + V+K++G    F+  KI   I KA          +     D I+ + +
Sbjct: 39  TTYEKVEDLPVM-VVKKDGRREEFNRDKILSGIKKAC--------EKRAISVDQIEEVVD 89

Query: 78  QTVTRLLQHNKSALIVHI 95
                    N+  +   +
Sbjct: 90  SVERDFRDANEKEISSTV 107


>gi|215479930|ref|YP_002332318.1| transposase A [Pseudomonas phage MP38]
 gi|169409298|gb|ACA57702.1| transposase A [Pseudomonas phage MP38]
          Length = 689

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS-------ASVELA 702
           NH  R   +GLMG         +PY S +A  + +   + +   A         A ++  
Sbjct: 336 NHMMRDEAVGLMGRLGIDMKNSLPYNS-QARGVIERVHQSLWIRAAKELPGYIGADMDRQ 394

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            +   +   + ++   G  P+ S        ++       R P   L + V     R  +
Sbjct: 395 AKLATFKLTRRAIAKGGTMPLMSWESFVAFCEQQIAEYNDR-PHSSLPRIVDPNTGRRRH 453

Query: 763 CM-----AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLW 816
                  A+      + +        P ++   +++    +   + N +   EL++    
Sbjct: 454 MTPNEAWALHEAEGFSPMRVTDDEARPLFRPQVLRTVRRCELEFIGNRYFARELEEFHGD 513

Query: 817 DEAMISDLKYHDGS 830
             A+  D+  HD S
Sbjct: 514 QVAVGYDI--HDAS 525


>gi|319789214|ref|YP_004150847.1| ATP-dependent protease La [Thermovibrio ammonificans HB-1]
 gi|317113716|gb|ADU96206.1| ATP-dependent protease La [Thermovibrio ammonificans HB-1]
          Length = 811

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R      +    +   L+ + D G L    + +L++  EEA   L  V     L +  + 
Sbjct: 151 RVVALGKQIPPDMVAILRSVEDPGRLADLIAGQLDLSTEEAVEILSTVDPIERLKKVSEK 210

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           +   +   +++  +   +R  +EKE     +  R  L+ +R+E
Sbjct: 211 LEHEIKVLEVQELIRAKARESMEKEQREYFL--RQQLKAIRKE 251


>gi|38229118|ref|NP_938213.1| A transposase [Pseudomonas phage D3112]
 gi|974769|emb|CAA60956.1| transposase [Pseudomonas phage D3112]
 gi|37595169|gb|AAQ94444.1| A transposase [Pseudomonas phage D3112]
          Length = 690

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS-------ASVELA 702
           NH  R   +GLMG         +PY S +A  + +   + +   A         A ++  
Sbjct: 337 NHMMRDEAVGLMGRLGIDMKNSLPYNS-QARGVIERVHQSLWIRAAKELPGYIGADMDRQ 395

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            +   +   + ++   G  P+ S        ++       R P   L + V     R  +
Sbjct: 396 AKLATFKLTRRAIAKGGTMPLMSWESFVAFCEQQIAEYNDR-PHSSLPRIVDPNTGRRRH 454

Query: 763 CM-----AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLW 816
                  A+      + +        P ++   +++    +   + N +   EL++    
Sbjct: 455 MTPNEAWALHEAEGFSPMRVTDDEARPLFRPQVLRTVRRCELEFIGNRYFARELEEFHGD 514

Query: 817 DEAMISDLKYHDGS 830
             A+  D+  HD S
Sbjct: 515 QVAVGYDI--HDAS 526


>gi|258591835|emb|CBE68138.1| conserved hypothetical protein with ATP cone domain [NC10 bacterium
           'Dutch sediment']
          Length = 157

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK +G    FD  KI   ++KA      K     ++++ I+  +  +   +  +   SA
Sbjct: 51  VIKADGRREPFDRHKILSGLLKA----TQKRPVSVVQLEKIVDEIEGRLAEKAEREMPSA 106

Query: 91  LI 92
            I
Sbjct: 107 EI 108


>gi|302866052|ref|YP_003834689.1| ATP-cone domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302568911|gb|ADL45113.1| ATP-cone domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 166

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KR+G    F  +KI   + KA              V D    L  Q V   +
Sbjct: 42  EEAVLAVVKRSGVTEPFSRTKIIGGVRKACQ---------GRPVDDDSIALLAQKVEETV 92

Query: 85  QHNKSALIVHIE 96
           +   +A I   E
Sbjct: 93  RAKGAAEIPSHE 104


>gi|37519712|ref|NP_923089.1| transcriptional regulator NrdR [Gloeobacter violaceus PCC 7421]
 gi|59799060|sp|Q7NPB2|NRDR_GLOVI RecName: Full=Transcriptional repressor NrdR
 gi|35210703|dbj|BAC88084.1| gll0143 [Gloeobacter violaceus PCC 7421]
          Length = 172

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +FD SK+ R +    +A E       + ++ ++ +L  +   R  +   SA
Sbjct: 51  VIKRNGRREAFDRSKVLRGV---MIACEKTDVPAEL-IEQLVDDLQAELQQRSSREVTSA 106

Query: 91  LI 92
            I
Sbjct: 107 EI 108


>gi|120598056|ref|YP_962630.1| transcriptional regulator NrdR [Shewanella sp. W3-18-1]
 gi|146293873|ref|YP_001184297.1| transcriptional regulator NrdR [Shewanella putrefaciens CN-32]
 gi|189030852|sp|A4Y965|NRDR_SHEPC RecName: Full=Transcriptional repressor NrdR
 gi|189030855|sp|A1RHD1|NRDR_SHESW RecName: Full=Transcriptional repressor NrdR
 gi|120558149|gb|ABM24076.1| ATP-cone domain protein [Shewanella sp. W3-18-1]
 gi|145565563|gb|ABP76498.1| ATP-cone domain protein [Shewanella putrefaciens CN-32]
 gi|319427245|gb|ADV55319.1| ribonucleotide reductase transcriptional regulator, NrdR
           [Shewanella putrefaciens 200]
          Length = 149

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  K+   +++A   VE     R + + +I + L++  +   L+    
Sbjct: 50  RVIKRDGSRQPFDEEKLQSGMLRA---VEK----RPVSMDEIEQALSK--IKSTLRATGE 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +   E + + +   LM     K+   Y+    +YR 
Sbjct: 101 REVPS-EMVGNLMMEQLM--NLDKVA--YIRFASVYRA 133


>gi|299144198|ref|ZP_07037278.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518683|gb|EFI42422.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 681

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            +S  I ++D  K + ++        N     + I DI++QV   L+Q  +    R Y  
Sbjct: 2   HSSNGIFIEDQAKTIAKEIEN---YANTLEDAISIYDIEEQVYYKLIQYNNPATARSYES 58

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
           Y+  +S  R   +  K    +  +    + D
Sbjct: 59  YKSVQSFKREQNTTDKEILGLLNQTNFNVMD 89


>gi|300022485|ref|YP_003755096.1| ATP-cone domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524306|gb|ADJ22775.1| ATP-cone domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 174

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 25 KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
          +++ + V+KR+G    FD  K    IS A+ K
Sbjct: 45 QLRELTVVKRSGRKVLFDRDKLSKSISVALRK 76


>gi|281356197|ref|ZP_06242690.1| L-aspartate oxidase [Victivallis vadensis ATCC BAA-548]
 gi|281317566|gb|EFB01587.1| L-aspartate oxidase [Victivallis vadensis ATCC BAA-548]
          Length = 551

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDT---------AVAVNQGGKRKGAVCAYLETWHI 457
           +RG GA +   + +    + F++  +           A A++   KR G  C YL+  H+
Sbjct: 266 LRGEGAVLKCRDARGAEPVEFMQKYHPMKSLAPRDVVARAIDSEMKRTGEECVYLDIRHL 325

Query: 458 D 458
           D
Sbjct: 326 D 326


>gi|315502611|ref|YP_004081498.1| ATP-cone domain protein [Micromonospora sp. L5]
 gi|315409230|gb|ADU07347.1| ATP-cone domain protein [Micromonospora sp. L5]
          Length = 166

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KR+G    F  +KI   + KA              V D    L  Q V   +
Sbjct: 42  EEAVLAVVKRSGVTEPFSRTKIIGGVRKACQ---------GRPVDDDSIALLAQKVEETV 92

Query: 85  QHNKSALIVHIE 96
           +   +A I   E
Sbjct: 93  RAKGAAEIPSHE 104


>gi|119953629|ref|YP_950428.1| putative A transposase [Pseudomonas phage DMS3]
 gi|110294447|gb|ABG66658.1| putative A transposase [Pseudomonas phage DMS3]
          Length = 653

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 17/194 (8%)

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS-------ASVELA 702
           NH  R   +GLMG         +PY S  A  + +   + +   A         A ++  
Sbjct: 300 NHMMRDEAVGLMGRLGIDMKNSLPYNSQ-ARGVIERVHQSLWIRAAKELPGYIGADMDRQ 358

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            +   +   + ++   G  P+ S        ++       R P   L + V     R  +
Sbjct: 359 AKLATFKLTRRAIAKGGTMPLMSWESFVAFCEQQIAEYNDR-PHSSLPRIVDPNTGRRRH 417

Query: 763 CM-----AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLW 816
                  A+      + +        P ++   +++    +   + N +   EL++    
Sbjct: 418 MTPNEAWALHEAEGFSPMRVTDDEARPLFRPQVLRTVRRCELEFIGNRYFARELEEFHGD 477

Query: 817 DEAMISDLKYHDGS 830
             A+  D+  HD S
Sbjct: 478 QVAVGYDI--HDAS 489


>gi|257125643|ref|YP_003163757.1| ATP-cone domain protein [Leptotrichia buccalis C-1013-b]
 gi|257049582|gb|ACV38766.1| ATP-cone domain protein [Leptotrichia buccalis C-1013-b]
          Length = 152

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIK+NG    +   K+   I++AF     K  S + +++++I  +  + +T      
Sbjct: 48  SLTVIKKNGQKQPYSREKVYNGIIRAF----EKRHSDTEKIEEMIDKIEREILTEYSGEI 103

Query: 88  KSALI 92
           KS+ +
Sbjct: 104 KSSEL 108


>gi|225021234|ref|ZP_03710426.1| hypothetical protein CORMATOL_01246 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305680708|ref|ZP_07403515.1| transcriptional regulator NrdR [Corynebacterium matruchotii ATCC
          14266]
 gi|224945967|gb|EEG27176.1| hypothetical protein CORMATOL_01246 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658913|gb|EFM48413.1| transcriptional regulator NrdR [Corynebacterium matruchotii ATCC
          14266]
          Length = 151

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          +   + VIKRNG    F   K+   + +A    +G+  S     +D +K L ++    + 
Sbjct: 42 EKAQLLVIKRNGLTEPFSREKVITGVRRA---CQGRNVS-----EDALKRLAQEVEEVVR 93

Query: 85 QHNKSA 90
           H  S 
Sbjct: 94 SHGSSQ 99


>gi|218890293|ref|YP_002439157.1| transposase A [Pseudomonas aeruginosa LESB58]
 gi|218770516|emb|CAW26281.1| transposase A [Pseudomonas aeruginosa LESB58]
          Length = 689

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 17/194 (8%)

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS-------ASVELA 702
           NH  R   +GLMG         +PY S  A  + +   + +   A         A ++  
Sbjct: 336 NHMMRDEAVGLMGRLGIDMKNSLPYNSQ-ARGVIERVHQSLWIRAAKELPGYIGADMDRQ 394

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            +   +   + ++   G  P+ S        ++       R P   L + V     R  +
Sbjct: 395 AKLATFKLTRRAIAKGGTMPLMSWESFVAFCEQQIAEYNDR-PHSSLPRIVDPNTGRRRH 453

Query: 763 CM-----AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLW 816
                  A+      + +        P ++   +++    +   + N +   EL++    
Sbjct: 454 MTPNEAWALHEAEGFSPMRVTDDEARPLFRPQVLRTVRRCELEFIGNRYFARELEEFHGD 513

Query: 817 DEAMISDLKYHDGS 830
             A+  D+  HD S
Sbjct: 514 QVAVGYDI--HDAS 525


>gi|256847923|ref|ZP_05553368.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
 gi|256715612|gb|EEU30588.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
          Length = 736

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 55  MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECS 105
            AV+ +   ++   +D +  LT+          +    V ++D+QD VE  
Sbjct: 359 QAVDNQDYEKAAFYRDQVTRLTKAKKAAEENKVEDEATVTVKDMQDIVEEK 409


>gi|116492285|ref|YP_804020.1| anaerobic ribonucleoside triphosphate reductase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102435|gb|ABJ67578.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Pediococcus
           pentosaceus ATCC 25745]
          Length = 723

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 108/312 (34%), Gaps = 43/312 (13%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           D+  ++     E +K ++V K +G V +F P KI+       + VE   +  +++     
Sbjct: 2   DSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIA-------LVVETLTSDAALQT---- 50

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE--RSDVRA 130
            +L EQ   R++    +   +   DI+   +  L  +   K+   Y  YRE+  +    A
Sbjct: 51  -SLKEQIFNRIVDDWDNN--ISTADIRQVFQEILRLNKQAKLLERYEAYREKDIKKWKTA 107

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
                K +        ++ ++    S N       +     G     + +       ++ 
Sbjct: 108 IDPQYKLNQLFNGNDMVVHENANKDS-NVFSTRRDLTAGMVGKSVGLTMMPEIVAKAHLR 166

Query: 191 DGLSESDLE----TALIFSS----RTLIEK---------EPNYAKVTARFLLEKLRREVL 233
             +   DL+    T++        + ++EK         EP  +  TA   + ++   V 
Sbjct: 167 GDIHFHDLDYSPLTSMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVA 226

Query: 234 TTVYKKPQKATHHEMQCLYPEYFC--------RYIEEGVKARLLHESMMDFDLVYLANDL 285
           ++ Y         E+   Y +            ++EEG +           D+      L
Sbjct: 227 SSQYGGCSADRADELLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAK-DIYDAMQAL 285

Query: 286 KYERDFAFEYLG 297
           +YE +  F   G
Sbjct: 286 EYEVNTLFSSNG 297


>gi|54025768|ref|YP_120010.1| transcriptional regulator NrdR [Nocardia farcinica IFM 10152]
 gi|59799083|sp|Q5YT45|NRDR_NOCFA RecName: Full=Transcriptional repressor NrdR
 gi|54017276|dbj|BAD58646.1| putative ATP-binding protein [Nocardia farcinica IFM 10152]
          Length = 156

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KR+G    F   K+ R + +A              V D   NL  Q V   +
Sbjct: 42  ETAILSVVKRSGVTEPFSREKVIRGVRRACQ---------GREVDDDALNLLAQQVEDAV 92

Query: 85  QHNKSALIVHIE 96
           +   S  +   E
Sbjct: 93  RAKGSPEVPSHE 104


>gi|158422886|ref|YP_001524178.1| ATP cone domain-containing protein [Azorhizobium caulinodans ORS
           571]
 gi|189030506|sp|A8I0I5|NRDR_AZOC5 RecName: Full=Transcriptional repressor NrdR
 gi|158329775|dbj|BAF87260.1| ATP cone domain protein [Azorhizobium caulinodans ORS 571]
          Length = 173

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+KR+G    FD  K++R       +VE     R +   + ++ +    V +L 
Sbjct: 45  QLRELMVVKRSGRRVPFDRDKLAR-------SVEIALRKRPVET-ERVERMLSGLVRQLE 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +   +  E I + V   L Q     +   YV +     + R A+ 
Sbjct: 97  SLGDTE--ITSETIGEMVMEGLKQID--DVA--YVRFASVYRNFREARD 139


>gi|254787587|ref|YP_003075016.1| NrdR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|259512018|sp|C5BS89|NRDR_TERTT RecName: Full=Transcriptional repressor NrdR
 gi|237687447|gb|ACR14711.1| transcriptional regulator NrdR [Teredinibacter turnerae T7901]
          Length = 155

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIK++G    FD  K+   + +A         +    + ++   L       +      
Sbjct: 50  KVIKQDGTREPFDEEKLRNGLQRALEKRPVSVEAIETALHNVRHYLQALGEREIKSLVIG 109

Query: 90  ALIVHIEDIQ--DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             ++  E++Q  DQV           + R +    E R+++   Q      A
Sbjct: 110 EKVM--EELQNLDQVAYV----RFASVYRSFQDISEFRAEIDRLQKKPDETA 155


>gi|38234009|ref|NP_939776.1| transcriptional regulator NrdR [Corynebacterium diphtheriae NCTC
           13129]
 gi|59799119|sp|Q6NGS9|NRDR_CORDI RecName: Full=Transcriptional repressor NrdR
 gi|38200271|emb|CAE49955.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 151

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + V+KRNG    F   K+   + +A    +G+  S      D +K L +Q   R+ 
Sbjct: 42  EKAQLLVVKRNGLTEPFSREKVIVGVRRA---CQGRDVS-----DDALKRLAQQVEERVR 93

Query: 85  QHNKSALIVHIEDI 98
            H  S   +H  +I
Sbjct: 94  LHGSSQ--IHANEI 105


>gi|108760844|ref|YP_632927.1| transcriptional regulator NrdR [Myxococcus xanthus DK 1622]
 gi|119372207|sp|Q1D346|NRDR_MYXXD RecName: Full=Transcriptional repressor NrdR
 gi|108464724|gb|ABF89909.1| transcriptional regulator, NrdR family [Myxococcus xanthus DK 1622]
          Length = 168

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++K++G   +FD  KI   + KA      K    + ++++ +  +  Q      +   S+
Sbjct: 51  IVKKDGRREAFDREKIVNGLKKAC----EKRPVSADQLEETVVAIERQLQGMGEKEVPSS 106

Query: 91  LIVHIEDI 98
           +I   E+I
Sbjct: 107 VIG--EEI 112


>gi|206900935|ref|YP_002249975.1| transcriptional regulator, TetR family [Dictyoglomus thermophilum
           H-6-12]
 gi|206740038|gb|ACI19096.1| transcriptional regulator, TetR family [Dictyoglomus thermophilum
           H-6-12]
          Length = 195

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 9/151 (5%)

Query: 169 ACSGLQDVSSKIVLSETYKN----MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
              G ++ S + +L E   +     Y   S+ ++    I        KE ++        
Sbjct: 23  LTKGYENTSVRDILREIKGSPGMFYYYFSSKEEIFEEAIKYYVENYIKELSHIFKDENLS 82

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           L++  ++V+  V K  +           P+YF   ++  +  R+L    +      L + 
Sbjct: 83  LQEKYQKVVNAVVKAFEDMKSLSDIYYSPQYFPLRVK--ISFRILDS--LQESFRELIDK 138

Query: 285 LKYERDFAFEYLGLQILYDRY-FLHINGSRI 314
           +K +++   +     ILY  Y  LH +  ++
Sbjct: 139 IKKDKNLDSQRAATFILYGVYGLLHKDAEKL 169


>gi|319946332|ref|ZP_08020570.1| LuxR family transcriptional regulator [Streptococcus australis ATCC
           700641]
 gi|319747485|gb|EFV99740.1| LuxR family transcriptional regulator [Streptococcus australis ATCC
           700641]
          Length = 986

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 163 EMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E ++ + C  L+ +    +LS   + ++       LE  L  S+  L  KE  Y     +
Sbjct: 551 EDLLVQFCRQLEAMYFYQLLSPARRRLFHQQIAQKLEETLEDSTDLLFYKEIAYQY---K 607

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
                LR       Y +      HE+  +Y +     + +G  + L     +      L 
Sbjct: 608 QSQNLLRSLSFELTYLEEILQLEHELFPIYSKGEEGVVSDGENSHLDIFGELSRLRRELD 667

Query: 283 NDL-KYERDFAFEYLGLQILY--DRYFLH 308
               ++++D  ++YL L+ LY   RYF+ 
Sbjct: 668 QLFSRHQKDRDYKYLQLRYLYLEGRYFIR 696


>gi|329122147|ref|ZP_08250755.1| iron oxidase [Dialister micraerophilus DSM 19965]
 gi|327466954|gb|EGF12470.1| iron oxidase [Dialister micraerophilus DSM 19965]
          Length = 167

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIK++G    FD +KI   +++A      K    + +++ +++ +  +    L Q  
Sbjct: 48  PVRVIKKDGTRELFDKNKIRNGLIRAC----EKRNISTEQIEQVVEKIEIKVYNALKQEI 103

Query: 88  KSALI 92
            +  I
Sbjct: 104 YTETI 108


>gi|313891517|ref|ZP_07825130.1| transcriptional regulator NrdR [Dialister microaerophilus UPII
           345-E]
 gi|313120094|gb|EFR43273.1| transcriptional regulator NrdR [Dialister microaerophilus UPII
           345-E]
          Length = 167

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+VIK++G    FD +KI   +++A      K    + +++ +++ +  +    L Q  
Sbjct: 48  PVRVIKKDGTRELFDKNKIRNGLIRAC----EKRNISTEQIEQVVEKIEIKVYNALKQEI 103

Query: 88  KSALI 92
            +  I
Sbjct: 104 YTETI 108


>gi|312898956|ref|ZP_07758344.1| putative transcriptional regulator NrdR [Megasphaera
           micronuciformis F0359]
 gi|310620118|gb|EFQ03690.1| putative transcriptional regulator NrdR [Megasphaera
           micronuciformis F0359]
          Length = 111

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIK++G    FD +KI   +++A      K      ++ DI+  +       L 
Sbjct: 3   EEVPLYVIKKDGSRQLFDRNKILNGLLRAC----NKRRVTRQQLDDIVLKVERNIRNTLA 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
           Q   S   V I +I       L +  +      Y+    +YR+
Sbjct: 59  QEVPS---VKIGEI------ILTELRNID-AVAYIRFASVYRQ 91


>gi|256005638|ref|ZP_05430596.1| flagellar protein FlaG protein [Clostridium thermocellum DSM 2360]
 gi|255990396|gb|EEU00520.1| flagellar protein FlaG protein [Clostridium thermocellum DSM 2360]
 gi|316941838|gb|ADU75872.1| flagellar protein FlaG protein [Clostridium thermocellum DSM 1313]
          Length = 131

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 46  ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECS 105
           I +AI KA  A+ G        + +  K +  + +    +     +    E I D V   
Sbjct: 62  IIKAIEKANKAINGIHTELEFSIHEKSKEIMVKVIDSETKEVIREIPP--EKILDMVAAM 119

Query: 106 LMQSG 110
           L  +G
Sbjct: 120 LEMAG 124


>gi|332670102|ref|YP_004453110.1| ATP-cone domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339140|gb|AEE45723.1| ATP-cone domain protein [Cellulomonas fimi ATCC 484]
          Length = 177

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
          +   + V+KR+G    F   KI+  + KA  
Sbjct: 42 ETASLSVVKRSGVTEPFSREKIATGVRKACQ 72


>gi|254689027|ref|ZP_05152281.1| transcriptional regulator NrdR [Brucella abortus bv. 6 str. 870]
 gi|256257277|ref|ZP_05462813.1| transcriptional regulator NrdR [Brucella abortus bv. 9 str. C68]
 gi|260754522|ref|ZP_05866870.1| transcriptional repressor nrdR [Brucella abortus bv. 6 str. 870]
 gi|260883550|ref|ZP_05895164.1| transcriptional repressor nrdR [Brucella abortus bv. 9 str. C68]
 gi|297248123|ref|ZP_06931841.1| transcriptional regulator NrdR [Brucella abortus bv. 5 str. B3196]
 gi|260674630|gb|EEX61451.1| transcriptional repressor nrdR [Brucella abortus bv. 6 str. 870]
 gi|260873078|gb|EEX80147.1| transcriptional repressor nrdR [Brucella abortus bv. 9 str. C68]
 gi|297175292|gb|EFH34639.1| transcriptional regulator NrdR [Brucella abortus bv. 5 str. B3196]
          Length = 158

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|17987473|ref|NP_540107.1| transcriptional regulator NrdR [Brucella melitensis bv. 1 str. 16M]
 gi|23501653|ref|NP_697780.1| transcriptional regulator NrdR [Brucella suis 1330]
 gi|62289718|ref|YP_221511.1| transcriptional regulator NrdR [Brucella abortus bv. 1 str. 9-941]
 gi|82699647|ref|YP_414221.1| transcriptional regulator NrdR [Brucella melitensis biovar Abortus
           2308]
 gi|148560525|ref|YP_001258745.1| transcriptional regulator NrdR [Brucella ovis ATCC 25840]
 gi|161618733|ref|YP_001592620.1| transcriptional regulator NrdR [Brucella canis ATCC 23365]
 gi|163843037|ref|YP_001627441.1| transcriptional regulator NrdR [Brucella suis ATCC 23445]
 gi|189023967|ref|YP_001934735.1| NrdR family transcriptional regulator [Brucella abortus S19]
 gi|225852282|ref|YP_002732515.1| transcriptional regulator NrdR [Brucella melitensis ATCC 23457]
 gi|237815206|ref|ZP_04594204.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|254693510|ref|ZP_05155338.1| transcriptional regulator NrdR [Brucella abortus bv. 3 str. Tulya]
 gi|254697162|ref|ZP_05158990.1| transcriptional regulator NrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701539|ref|ZP_05163367.1| transcriptional regulator NrdR [Brucella suis bv. 5 str. 513]
 gi|254704088|ref|ZP_05165916.1| transcriptional regulator NrdR [Brucella suis bv. 3 str. 686]
 gi|254718883|ref|ZP_05180694.1| transcriptional regulator NrdR [Brucella sp. 83/13]
 gi|254730058|ref|ZP_05188636.1| transcriptional regulator NrdR [Brucella abortus bv. 4 str. 292]
 gi|256044452|ref|ZP_05447356.1| transcriptional regulator NrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060882|ref|ZP_05451042.1| transcriptional regulator NrdR [Brucella neotomae 5K33]
 gi|256113296|ref|ZP_05454164.1| transcriptional regulator NrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264213|ref|ZP_05466745.1| transcriptional repressor nrdR [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369198|ref|YP_003106706.1| hypothetical protein BMI_I763 [Brucella microti CCM 4915]
 gi|260545529|ref|ZP_05821270.1| transcriptional repressor nrdR [Brucella abortus NCTC 8038]
 gi|260563803|ref|ZP_05834289.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str. 16M]
 gi|260566664|ref|ZP_05837134.1| transcriptional repressor nrdR [Brucella suis bv. 4 str. 40]
 gi|260757743|ref|ZP_05870091.1| transcriptional repressor nrdR [Brucella abortus bv. 4 str. 292]
 gi|260761568|ref|ZP_05873911.1| transcriptional repressor nrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261213770|ref|ZP_05928051.1| transcriptional repressor nrdR [Brucella abortus bv. 3 str. Tulya]
 gi|261324880|ref|ZP_05964077.1| transcriptional repressor nrdR [Brucella neotomae 5K33]
 gi|261752089|ref|ZP_05995798.1| transcriptional repressor nrdR [Brucella suis bv. 5 str. 513]
 gi|261754748|ref|ZP_05998457.1| transcriptional repressor nrdR [Brucella suis bv. 3 str. 686]
 gi|265983869|ref|ZP_06096604.1| transcriptional repressor nrdR [Brucella sp. 83/13]
 gi|265990873|ref|ZP_06103430.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994709|ref|ZP_06107266.1| transcriptional repressor nrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|294852127|ref|ZP_06792800.1| transcriptional regulator NrdR [Brucella sp. NVSL 07-0026]
 gi|306838788|ref|ZP_07471621.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|306841988|ref|ZP_07474662.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306843710|ref|ZP_07476310.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|54039976|sp|P67312|NRDR_BRUSU RecName: Full=Transcriptional repressor NrdR
 gi|54042710|sp|P67311|NRDR_BRUME RecName: Full=Transcriptional repressor NrdR
 gi|75497001|sp|Q57DY4|NRDR_BRUAB RecName: Full=Transcriptional repressor NrdR
 gi|91208373|sp|Q2YN94|NRDR_BRUA2 RecName: Full=Transcriptional repressor NrdR
 gi|189030514|sp|A9MAE6|NRDR_BRUC2 RecName: Full=Transcriptional repressor NrdR
 gi|189030515|sp|A5VPU8|NRDR_BRUO2 RecName: Full=Transcriptional repressor NrdR
 gi|189030516|sp|B0CL91|NRDR_BRUSI RecName: Full=Transcriptional repressor NrdR
 gi|226732955|sp|B2S514|NRDR_BRUA1 RecName: Full=Transcriptional repressor NrdR
 gi|254767997|sp|C0RIA3|NRDR_BRUMB RecName: Full=Transcriptional repressor NrdR
 gi|17983169|gb|AAL52371.1| putative regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|23347573|gb|AAN29695.1| conserved hypothetical protein TIGR00244 [Brucella suis 1330]
 gi|62195850|gb|AAX74150.1| conserved hypothetical protein TIGR00244 [Brucella abortus bv. 1
           str. 9-941]
 gi|82615748|emb|CAJ10744.1| Protein of unknown function DUF193:ATP cone domain [Brucella
           melitensis biovar Abortus 2308]
 gi|148371782|gb|ABQ61761.1| transcriptional regulator NrdR [Brucella ovis ATCC 25840]
 gi|161335544|gb|ABX61849.1| conserved hypothetical protein [Brucella canis ATCC 23365]
 gi|163673760|gb|ABY37871.1| conserved hypothetical protein [Brucella suis ATCC 23445]
 gi|189019539|gb|ACD72261.1| Protein of unknown function DUF193 [Brucella abortus S19]
 gi|225640647|gb|ACO00561.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
 gi|237790043|gb|EEP64253.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|255999358|gb|ACU47757.1| hypothetical protein BMI_I763 [Brucella microti CCM 4915]
 gi|260096936|gb|EEW80811.1| transcriptional repressor nrdR [Brucella abortus NCTC 8038]
 gi|260153819|gb|EEW88911.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str. 16M]
 gi|260156182|gb|EEW91262.1| transcriptional repressor nrdR [Brucella suis bv. 4 str. 40]
 gi|260668061|gb|EEX55001.1| transcriptional repressor nrdR [Brucella abortus bv. 4 str. 292]
 gi|260672000|gb|EEX58821.1| transcriptional repressor nrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260915377|gb|EEX82238.1| transcriptional repressor nrdR [Brucella abortus bv. 3 str. Tulya]
 gi|261300860|gb|EEY04357.1| transcriptional repressor nrdR [Brucella neotomae 5K33]
 gi|261741842|gb|EEY29768.1| transcriptional repressor nrdR [Brucella suis bv. 5 str. 513]
 gi|261744501|gb|EEY32427.1| transcriptional repressor nrdR [Brucella suis bv. 3 str. 686]
 gi|262765822|gb|EEZ11611.1| transcriptional repressor nrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001657|gb|EEZ14232.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094457|gb|EEZ18279.1| transcriptional repressor nrdR [Brucella melitensis bv. 2 str.
           63/9]
 gi|264662461|gb|EEZ32722.1| transcriptional repressor nrdR [Brucella sp. 83/13]
 gi|294820716|gb|EFG37715.1| transcriptional regulator NrdR [Brucella sp. NVSL 07-0026]
 gi|306276020|gb|EFM57729.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|306287916|gb|EFM59333.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306406139|gb|EFM62385.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 158

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|255528251|ref|ZP_05395069.1| ATP-dependent DNA helicase, RecQ family [Clostridium
           carboxidivorans P7]
 gi|296188052|ref|ZP_06856444.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans
           P7]
 gi|255508054|gb|EET84476.1| ATP-dependent DNA helicase, RecQ family [Clostridium
           carboxidivorans P7]
 gi|296047178|gb|EFG86620.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Clostridium carboxidivorans
           P7]
          Length = 666

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 111/334 (33%), Gaps = 51/334 (15%)

Query: 47  SRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ------- 99
             A+ + F A    G   S   Q+II       +  +   N   + + I DI+       
Sbjct: 273 KDALERGFKATGFHGDMSSKDRQEIINRYKNNDIDVIFATNAFGMGIDIPDIKVVIHFMI 332

Query: 100 -DQVECSLMQSGHHK----ITREYVLYREERSDVRAAQSHSKSDA-PIAPKLKIMMDD-- 151
            + VE    + G           YVLY  +  +++  ++H    + P   +LK   +   
Sbjct: 333 PESVEQYYQEIGRGARDIPAANAYVLYTNK--NIQVKKTHFIDRSFPNIEELKECYNKIT 390

Query: 152 ------GTLISFNSKRLEMIVEEA---------CSGLQDVSS-KIVLSETYKNMYDGLSE 195
                  TL  F  + ++  +            C G+ ++     +  +  +++++    
Sbjct: 391 SNKIGLKTLQYFEDETIQKCLPYFLDNDLLSIRCKGVSNLKMLSDIKLQELEDIFNATKT 450

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             + T +  +       +P Y  +T    L  L+ +V              + + +  E 
Sbjct: 451 KGIITTIKKTGL-----DPQY--ITNLIYLAVLQEKVTLQKGFPKCLIVESKCKNISDEK 503

Query: 256 ---FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL--QILYDRY-FLHI 309
                 YIEE  + +        + L    + ++  ++   +YLG+    L   Y  L  
Sbjct: 504 AEQLKEYIEEKKQYKHKLLDYFVYLLDEDNSSIQLHQEIG-KYLGVPKFKLGRIYSTLKG 562

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +  R +      + +A  L     E E     FY
Sbjct: 563 DKVRSKS----EVIIANLLYENGIEYEYEKKLFY 592


>gi|29654710|ref|NP_820402.1| transcriptional regulator NrdR [Coxiella burnetii RSA 493]
 gi|153208977|ref|ZP_01947183.1| transcriptional regulator NrdR [Coxiella burnetii 'MSU Goat
          Q177']
 gi|154706049|ref|YP_001423987.1| transcriptional regulator NrdR [Coxiella burnetii Dugway
          5J108-111]
 gi|161830065|ref|YP_001597257.1| transcriptional regulator NrdR [Coxiella burnetii RSA 331]
 gi|165924145|ref|ZP_02219977.1| transcriptional regulator NrdR [Coxiella burnetii RSA 334]
 gi|212212218|ref|YP_002303154.1| transcriptional regulator NrdR [Coxiella burnetii CbuG_Q212]
 gi|212219015|ref|YP_002305802.1| transcriptional regulator NrdR [Coxiella burnetii CbuK_Q154]
 gi|38258727|sp|Q83BT4|NRDR_COXBU RecName: Full=Transcriptional repressor NrdR
 gi|189030536|sp|A9KBN5|NRDR_COXBN RecName: Full=Transcriptional repressor NrdR
 gi|189030537|sp|A9N8T7|NRDR_COXBR RecName: Full=Transcriptional repressor NrdR
 gi|226732971|sp|B6J8Q8|NRDR_COXB1 RecName: Full=Transcriptional repressor NrdR
 gi|226732972|sp|B6IZ81|NRDR_COXB2 RecName: Full=Transcriptional repressor NrdR
 gi|29541978|gb|AAO90916.1| putative regulatory protein [Coxiella burnetii RSA 493]
 gi|120575577|gb|EAX32201.1| transcriptional regulator NrdR [Coxiella burnetii 'MSU Goat
          Q177']
 gi|154355335|gb|ABS76797.1| putative regulatory protein [Coxiella burnetii Dugway 5J108-111]
 gi|161761932|gb|ABX77574.1| transcriptional regulator NrdR [Coxiella burnetii RSA 331]
 gi|165916404|gb|EDR35008.1| transcriptional regulator NrdR [Coxiella burnetii RSA 334]
 gi|212010628|gb|ACJ18009.1| putative regulatory protein [Coxiella burnetii CbuG_Q212]
 gi|212013277|gb|ACJ20657.1| putative regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 157

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
          ++IKR+G  ++FD  K+   ++KA              VQ II  L
Sbjct: 50 RIIKRDGRRSAFDEEKLRAGLLKALEKRPISTEQIETAVQRIIHKL 95


>gi|42526838|ref|NP_971936.1| transcriptional regulator NrdR [Treponema denticola ATCC 35405]
 gi|59799127|sp|Q73N26|NRDR_TREDE RecName: Full=Transcriptional repressor NrdR
 gi|41817153|gb|AAS11847.1| conserved hypothetical protein TIGR00244 [Treponema denticola
          ATCC 35405]
          Length = 151

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
          + K   VIK++G    FD  K+ + I +A      K       +++I+  + +Q V
Sbjct: 45 EEKPFMVIKKDGRREPFDRKKLEKGIERAL----EKRPVSLNSIENIVTEIEDQAV 96


>gi|326408786|gb|ADZ65851.1| transcriptional regulator NrdR [Brucella melitensis M28]
 gi|326538504|gb|ADZ86719.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 146

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 33  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 92

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 93  SDEIGRLAMDALKGIDDI 110


>gi|150391608|ref|YP_001321657.1| peptidase M56, BlaR1 [Alkaliphilus metalliredigens QYMF]
 gi|149951470|gb|ABR49998.1| peptidase M56, BlaR1 [Alkaliphilus metalliredigens QYMF]
          Length = 456

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF--- 223
           E    GL+      +   T   +  G +  +++ ++   S   I +E +Y    +     
Sbjct: 315 EWEIEGLETTDLSNI---TVDRIGIGSNIGEIDLSIYQESNRFINREGDYTYYFSELVLD 371

Query: 224 -------LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
                   +     EV+  V      +T  E+  L  + + +  E+G + RL+     D 
Sbjct: 372 IEDGYVNYIFAFNSEVVINVNNNQSISTIDEVSNLLGDAYLQKTEDG-EQRLMKHIYYDR 430

Query: 277 DLVYLANDLKYERDFAF 293
           ++  +A  +    D  F
Sbjct: 431 EMEVVAEFIYSNYDNQF 447


>gi|251771469|gb|EES52046.1| Regulatory protein [Leptospirillum ferrodiazotrophum]
          Length = 156

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K++G    +D +K+   + +AF        + +  V +I + L+E +   +       
Sbjct: 51  VVKKDGRREPYDRNKLMEGLRRAFQKRPVSTEAITAIVDEIERTLSEISTQEIPSRRIGE 110

Query: 91  LIV-HIEDIQDQV 102
           L++ H+  I D V
Sbjct: 111 LVMEHLSRI-DHV 122


>gi|32475165|ref|NP_868159.1| transcriptional regulator NrdR [Rhodopirellula baltica SH 1]
 gi|59799140|sp|Q7UG92|NRDR_RHOBA RecName: Full=Transcriptional repressor NrdR
 gi|32445706|emb|CAD78437.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
 gi|327540293|gb|EGF26879.1| transcriptional regulator NrdR [Rhodopirellula baltica WH47]
          Length = 156

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 113 KITRE-YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS 171
           +     YV+ R +R      +  +  +   A  ++++  D T   F+ ++++  +E ACS
Sbjct: 17  RTAEAGYVV-RRKRLCQTCQRRFTTLEQIDALNVRVVKSDETREPFDREKIKRGIERACS 75

Query: 172 GLQDVSSKI------VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
                S +I      +    Y      +  + +   ++    TL   E  Y +  +
Sbjct: 76  KRAVTSDEIEKTVQKIEEAIYAEFDMEIPTATIGEVVLRKLATL--DEVAYIRFAS 129


>gi|227549111|ref|ZP_03979160.1| NrdR family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227078808|gb|EEI16771.1| NrdR family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 152

 Score = 38.6 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
          V+KRNG    FD  K+   + +A    +G+  S      D +K L +Q    +  H  S 
Sbjct: 48 VVKRNGVSEPFDRDKLISGVRRA---CQGRDVS-----DDALKRLAQQVEETVRSHGSSQ 99


>gi|255029612|ref|ZP_05301563.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes LO28]
          Length = 95

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 148 MMDDG--TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           ++ DG    + F+  RL+  +E+       +  +    + +  +   +  +  +L   LI
Sbjct: 11  IVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLI 70

Query: 204 FSSRTLIEKE-PNYAKVTARFLL 225
             +    +   P +    AR  L
Sbjct: 71  REAEARTDIHIPEWEHFAARLYL 93


>gi|125974704|ref|YP_001038614.1| flagellar protein FlaG protein [Clostridium thermocellum ATCC
           27405]
 gi|281418827|ref|ZP_06249846.1| flagellar protein FlaG protein [Clostridium thermocellum JW20]
 gi|125714929|gb|ABN53421.1| flagellar protein FlaG protein [Clostridium thermocellum ATCC
           27405]
 gi|281407911|gb|EFB38170.1| flagellar protein FlaG protein [Clostridium thermocellum JW20]
          Length = 131

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 46  ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECS 105
           I +AI KA  A+ G        + +  K +  + +    +     +    E I D V   
Sbjct: 62  IIKAIEKANKAINGIHTELEFSIHEKSKEIMVKVIDSETKEVIREIPP--EKILDMVAAM 119

Query: 106 LMQSG 110
           L  +G
Sbjct: 120 LEMAG 124


>gi|294055385|ref|YP_003549043.1| ATP-cone domain protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614718|gb|ADE54873.1| ATP-cone domain protein [Coraliomargarita akajimensis DSM 45221]
          Length = 156

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             +QV+KR+G    FD +K+   + KA            + + D +  L ++    +   
Sbjct: 47  ADLQVVKRDGRREDFDRAKMLGGLKKAVQKRPIDVMQIEMLIADALAALEKEFDHEIPAK 106

Query: 87  NKSALIVH 94
                I+ 
Sbjct: 107 AIGEQIMT 114


>gi|78222832|ref|YP_384579.1| transcriptional regulator NrdR [Geobacter metallireducens GS-15]
 gi|91208013|sp|Q39V70|NRDR_GEOMG RecName: Full=Transcriptional repressor NrdR
 gi|78194087|gb|ABB31854.1| protein of unknown function DUF193 [Geobacter metallireducens
          GS-15]
          Length = 150

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
          V+K++G    FD  KI   I+KA          +    ++ +  L ++   RL +
Sbjct: 51 VLKKDGRREPFDRMKIVGGILKAC--------EKRQVSRETVDRLVDRLEGRLQE 97


>gi|254415744|ref|ZP_05029502.1| transcriptional regulator NrdR [Microcoleus chthonoplastes PCC
           7420]
 gi|196177450|gb|EDX72456.1| transcriptional regulator NrdR [Microcoleus chthonoplastes PCC
           7420]
          Length = 190

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G   SFD SK+ R +++A             R++ I+  +  +      +  
Sbjct: 48  PITVLKRDGKRESFDRSKLLRGMVRACEKTGVSQR----RLEAIVDEIEAEVQQHYGRDV 103

Query: 88  KSALI 92
            S  +
Sbjct: 104 NSDEV 108


>gi|119871573|ref|YP_929580.1| hypothetical protein Pisl_0053 [Pyrobaculum islandicum DSM 4184]
 gi|119672981|gb|ABL87237.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
          Length = 91

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          V+V+KR+G V  F P K+  +++KA     V  K A +        +N+T Q +TR++
Sbjct: 2  VKVVKRDGRVEEFIPEKVVVSVLKAGAPADVARKIAKKVECAVMDRENVTAQELTRMI 59


>gi|210613380|ref|ZP_03289700.1| hypothetical protein CLONEX_01907 [Clostridium nexile DSM 1787]
 gi|210151222|gb|EEA82230.1| hypothetical protein CLONEX_01907 [Clostridium nexile DSM 1787]
          Length = 1389

 Score = 38.2 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%)

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178
           V Y  E   +  A     +D  +  +LK++  DG +     K   ++V +A      V++
Sbjct: 534 VTYTTEDDSIIVAGKMKDNDLKLNGRLKVVTKDGEVTPVEGKEGTLLVSDATEVYIYVTA 593

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
                  +     G ++  L   +        ++  +  K  A+   + +   V     +
Sbjct: 594 DTDYEMVHPEYRTGQTDQQLADEVKKVMDDATKQGYDQVKENAQADYKNIYDRVKIDFGQ 653

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +    T  E+   Y +      E+     ++ + 
Sbjct: 654 EASDKTIDELIKAYKDGNASTEEKAYLETMIFQY 687


>gi|126175362|ref|YP_001051511.1| transcriptional regulator NrdR [Shewanella baltica OS155]
 gi|153001672|ref|YP_001367353.1| transcriptional regulator NrdR [Shewanella baltica OS185]
 gi|160876410|ref|YP_001555726.1| transcriptional regulator NrdR [Shewanella baltica OS195]
 gi|217972395|ref|YP_002357146.1| transcriptional regulator NrdR [Shewanella baltica OS223]
 gi|304410192|ref|ZP_07391811.1| ATP-cone domain protein [Shewanella baltica OS183]
 gi|307302097|ref|ZP_07581855.1| ATP-cone domain protein [Shewanella baltica BA175]
 gi|189030846|sp|A3D7C9|NRDR_SHEB5 RecName: Full=Transcriptional repressor NrdR
 gi|189030847|sp|A6WR51|NRDR_SHEB8 RecName: Full=Transcriptional repressor NrdR
 gi|189030848|sp|A9KYJ5|NRDR_SHEB9 RecName: Full=Transcriptional repressor NrdR
 gi|254768027|sp|B8E6W2|NRDR_SHEB2 RecName: Full=Transcriptional repressor NrdR
 gi|125998567|gb|ABN62642.1| ATP-cone domain protein [Shewanella baltica OS155]
 gi|151366290|gb|ABS09290.1| ATP-cone domain protein [Shewanella baltica OS185]
 gi|160861932|gb|ABX50466.1| ATP-cone domain protein [Shewanella baltica OS195]
 gi|217497530|gb|ACK45723.1| ATP-cone domain protein [Shewanella baltica OS223]
 gi|304351601|gb|EFM16000.1| ATP-cone domain protein [Shewanella baltica OS183]
 gi|306914135|gb|EFN44556.1| ATP-cone domain protein [Shewanella baltica BA175]
 gi|315268600|gb|ADT95453.1| ATP-cone domain protein [Shewanella baltica OS678]
          Length = 149

 Score = 38.2 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  K+   +++A   VE     R + + +I + L++  +   L+    
Sbjct: 50  RVIKRDGSRQPFDEEKLQGGMLRA---VEK----RPVSMDEIEQALSK--IKSTLRATGE 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +   E + + +   LM     K+   Y+    +YR 
Sbjct: 101 REVPS-EMVGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|270290445|ref|ZP_06196670.1| transcriptional regulator NrdR [Pediococcus acidilactici 7_4]
 gi|304384673|ref|ZP_07367019.1| transcriptional regulator NrdR [Pediococcus acidilactici DSM
          20284]
 gi|270281226|gb|EFA27059.1| transcriptional regulator NrdR [Pediococcus acidilactici 7_4]
 gi|304328867|gb|EFL96087.1| transcriptional regulator NrdR [Pediococcus acidilactici DSM
          20284]
          Length = 158

 Score = 38.2 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          +   + VIK+NG    FD  KI + I++A      K   +  ++ DI+  +  + 
Sbjct: 45 EATPLLVIKKNGSREEFDRDKILKGIVRAA----EKRPVKMEQMTDIVDKVENKI 95


>gi|260655521|ref|ZP_05861009.1| transcriptional regulator NrdR [Jonquetella anthropi E3_33 E1]
 gi|260629969|gb|EEX48163.1| transcriptional regulator NrdR [Jonquetella anthropi E3_33 E1]
          Length = 165

 Score = 38.2 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 19/67 (28%)

Query: 31  VIKRNGGVTSFDPSKISR--------------AIMKAFMAVEGK-----GASRSIRVQDI 71
           + K++G   +FD  KI R              AI +A  +VE K     G   S R+ D+
Sbjct: 57  IRKKDGRREAFDREKIVRGMSRACEKLPVSLEAIEEAAASVEKKLRGEGGEIPSSRIGDL 116

Query: 72  IKNLTEQ 78
           +     Q
Sbjct: 117 VMEELRQ 123


>gi|225850612|ref|YP_002730846.1| transcriptional regulator NrdR [Persephonella marina EX-H1]
 gi|254768023|sp|C0QQA0|NRDR_PERMH RecName: Full=Transcriptional repressor NrdR
 gi|225646505|gb|ACO04691.1| transcriptional regulator NrdR [Persephonella marina EX-H1]
          Length = 152

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           + + + V K+NG    F+  KI R I  A             + + + +    +    + 
Sbjct: 45  EEEKIVVKKKNGTTEPFNKDKIIRGIRLA------------SKNRPVSEKQMVEIADEIE 92

Query: 85  QHNKSALIVHIE--DIQDQVECSL 106
           ++      + +E  +I D V+  L
Sbjct: 93  KYLLEEGKLVVESTEIGDLVQEKL 116


>gi|144897823|emb|CAM74687.1| Protein of unknown function DUF193 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 155

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D        + P     F      +I+ + VIK++G  + FD  K    ++K+   
Sbjct: 17  RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGSRSPFDRDK----LLKSLRI 72

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116
              K      +V+ I   +      R L+      +     I + V   LM     K+  
Sbjct: 73  ALRKRPVEEEQVERIANGI-----HRRLESMGENEVPSKY-IGELVMDVLMDLD--KVA- 123

Query: 117 EYVLYREERSDVRAAQS 133
            YV Y     + R A+ 
Sbjct: 124 -YVRYASVYRNFREAKD 139


>gi|116492459|ref|YP_804194.1| transcriptional regulator NrdR [Pediococcus pentosaceus ATCC 25745]
 gi|122266077|sp|Q03GC0|NRDR_PEDPA RecName: Full=Transcriptional repressor NrdR
 gi|116102609|gb|ABJ67752.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Pediococcus pentosaceus ATCC 25745]
          Length = 157

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +   + VIK+NG    FD  KI + I++A        A +     + + ++ ++   ++ 
Sbjct: 45  EATPLLVIKKNGSREEFDRDKILKGIVRA--------AEKRPLNMEQMTDMVDKVENKVR 96

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              +S +   I  I + V   L+          Y+    +YR+
Sbjct: 97  SLGESEISSQI--IGEYVMNILVDLDEI----AYIRFASVYRQ 133


>gi|259502799|ref|ZP_05745701.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           antri DSM 16041]
 gi|259169166|gb|EEW53661.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           antri DSM 16041]
          Length = 745

 Score = 37.8 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++VIKR+G  +SF   KI                  ++   +  ++  +  +   L 
Sbjct: 14  LADLKVIKRDGTPSSFYAYKI-------------DLVLDALDADEQTRHSVDLAIFNALM 60

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            NK      I D+   VE  L  +GH  + ++Y  YR+   +  A  ++ +
Sbjct: 61  GNKEVRTTTIADL--FVE-GLRMAGHDDLAKQYRDYRQADEEAFAEATNPQ 108


>gi|218297376|ref|ZP_03497982.1| ATP-cone domain protein [Thermus aquaticus Y51MC23]
 gi|218242329|gb|EED08874.1| ATP-cone domain protein [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 25 KIKGVQVIKRNGGVTSFDPSK 45
          +++ + VIKR+G    F+P K
Sbjct: 45 QLEPLMVIKRDGRKEPFNPDK 65


>gi|222529499|ref|YP_002573381.1| transcriptional regulator NrdR [Caldicellulosiruptor bescii DSM
           6725]
 gi|312622267|ref|YP_004023880.1| ATP-cone domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|254767990|sp|B9MJV0|NRDR_ANATD RecName: Full=Transcriptional repressor NrdR
 gi|222456346|gb|ACM60608.1| ATP-cone domain protein [Caldicellulosiruptor bescii DSM 6725]
 gi|312202734|gb|ADQ46061.1| ATP-cone domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 153

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFM----AVEGKGASRSIRVQDIIKNLTEQTV 80
           + + + VIK++     FD +KI   I+KA      ++E           +I  ++ E+  
Sbjct: 45  EKQPILVIKKDNRREEFDRNKILNGIIKACQKRPVSIEQMNKIVDEIENEIYNSMREEIS 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +R +       +  I++I
Sbjct: 105 SREIGEMVMEKLKKIDEI 122


>gi|302035556|ref|YP_003795878.1| transcriptional regulator NrdR [Candidatus Nitrospira defluvii]
 gi|300603620|emb|CBK39951.1| Transcriptional regulator NrdR [Candidatus Nitrospira defluvii]
          Length = 137

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          V+K++G    FD SKI   + KA          +       I+ +T++   R+
Sbjct: 34 VVKKDGRREPFDRSKIVSGLKKAC--------EKRPISTATIEAVTDRIEKRI 78


>gi|308235565|ref|ZP_07666302.1| transcriptional regulator NrdR [Gardnerella vaginalis ATCC 14018]
 gi|311114346|ref|YP_003985567.1| transcriptional regulator NrdR [Gardnerella vaginalis ATCC 14019]
 gi|310945840|gb|ADP38544.1| transcriptional regulator NrdR [Gardnerella vaginalis ATCC 14019]
          Length = 149

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKA---------FMAVEGKGASRSIRVQDIIKNL 75
           +   + V+KR+G +  FD +K+   + KA          +   G      +R + + +  
Sbjct: 42  ETTQLLVMKRSGSIEPFDRAKVVAGVGKACQGRPIDSEALKTLGMEVEADLRARGLAQVT 101

Query: 76  TEQTVTRLLQHNKSALIV 93
           +E+    +L+  +    V
Sbjct: 102 SEEVGKAILKPLRELDEV 119


>gi|153005592|ref|YP_001379917.1| transcriptional regulator NrdR [Anaeromyxobacter sp. Fw109-5]
 gi|189030503|sp|A7HDY7|NRDR_ANADF RecName: Full=Transcriptional repressor NrdR
 gi|152029165|gb|ABS26933.1| ATP-cone domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 162

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           V+K++G    FD  KI   + +A      K    +  ++ ++  +  Q
Sbjct: 50 HVVKKDGRREPFDRKKIVEGVARACQ----KRPVSAEEIEALVSGVERQ 94


>gi|222151597|ref|YP_002560753.1| hypothetical protein MCCL_1350 [Macrococcus caseolyticus JCSC5402]
 gi|222120722|dbj|BAH18057.1| transcriptional regulator NrdR repressor [Macrococcus caseolyticus
           JCSC5402]
          Length = 157

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+K++G   +F+  KI   +++A          +     + ++ +T+     L 
Sbjct: 48  ELQPLIVVKKDGTRQAFNRDKIVHGLVRAC--------EKRPVPYESLEQITDAVENTLR 99

Query: 85  QHNKSA-LIVHIEDIQDQVECSLMQ 108
           +  +S    V I +I   V   LMQ
Sbjct: 100 EKGQSEISSVDIGEI---VMEHLMQ 121


>gi|313884838|ref|ZP_07818590.1| transcriptional regulator NrdR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619529|gb|EFR30966.1| transcriptional regulator NrdR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 170

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V+KR+G    F   K+ R I++A      K      ++ ++   + EQ        
Sbjct: 47  APLLVVKRDGTRQEFSREKLLRGIVRAA----EKRPVAHEQMAELAAKVEEQI------R 96

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           + S   +   DI + V   LM+         Y+ +     + ++ +   K    +  KL 
Sbjct: 97  DWSDHEIESRDIGELVMPLLMELDEV----AYIRFASVYREFQSKEMFLKELEEMEAKLA 152

Query: 147 IMMDD 151
               D
Sbjct: 153 ANEKD 157


>gi|227824975|ref|ZP_03989807.1| transcriptional repressor nrdR [Acidaminococcus sp. D21]
 gi|226905474|gb|EEH91392.1| transcriptional repressor nrdR [Acidaminococcus sp. D21]
          Length = 155

 Score = 37.8 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFM----AVEGKGASRSIRVQDIIKNLTEQTV 80
           +   + VIK++G    FD  K++  ++KAF     + E   +  S   +D+      +  
Sbjct: 45  EETPLLVIKKDGRRELFDSQKLTNGLLKAFEKRPFSYEQIQSIASGIERDLRALGESEVK 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           + L+       +  I+ I
Sbjct: 105 STLIGETVMKALEKIDQI 122


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.127    0.351 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,352,698,569
Number of Sequences: 14124377
Number of extensions: 586814889
Number of successful extensions: 1740381
Number of sequences better than 10.0: 5423
Number of HSP's better than 10.0 without gapping: 8802
Number of HSP's successfully gapped in prelim test: 1434
Number of HSP's that attempted gapping in prelim test: 1672413
Number of HSP's gapped (non-prelim): 18795
length of query: 954
length of database: 4,842,793,630
effective HSP length: 149
effective length of query: 805
effective length of database: 2,738,261,457
effective search space: 2204300472885
effective search space used: 2204300472885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 86 (37.8 bits)